##fileformat=VCFv4.1
##FILTER=<ID=PASS,Description="Accept as a confident somatic mutation">
##FILTER=<ID=REJECT,Description="Rejected as a confident somatic mutation">
##FORMAT=<ID=AD,Number=.,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
##FORMAT=<ID=BQ,Number=A,Type=Float,Description="Average base quality for reads supporting alleles">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
##FORMAT=<ID=FA,Number=A,Type=Float,Description="Allele fraction of the alternate allele with regard to reference">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
##FORMAT=<ID=SS,Number=1,Type=Integer,Description="Variant status relative to non-adjacent Normal,0=wildtype,1=germline,2=somatic,3=LOH,4=post-transcriptional modification,5=unknown">
##GATKCommandLine.CombineVariants=<ID=CombineVariants,Version=3.4-46-gbc02625,Date="Tue Oct 20 00:04:40 CEST 2015",Epoch=1445292280427,CommandLineOptions="analysis_type=CombineVariants input_file=[] showFullBamList=false read_buffer_size=null phone_home=AWS gatk_key=null tag=NA read_filter=[] disable_read_filter=[] intervals=[intervals_list.intervals] excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=100 reference_sequence=ucsc.hg19.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=200 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 logging_level=INFO log_to_file=null help=false version=false variant=[(RodBindingCollection [(RodBinding name=variant source=SRR768531.final.vcf)]), (RodBindingCollection [(RodBinding name=variant2 source=SRR768530.final.vcf)]), (RodBindingCollection [(RodBinding name=variant3 source=SRR768529.final.vcf)]), (RodBindingCollection [(RodBinding name=variant4 source=SRR766062.final.vcf)]), (RodBindingCollection [(RodBinding name=variant5 source=SRR766027.final.vcf)]), (RodBindingCollection [(RodBinding name=variant6 source=SRR766011.final.vcf)]), (RodBindingCollection [(RodBinding name=variant7 source=SRR766005.final.vcf)]), (RodBindingCollection [(RodBinding name=variant8 source=SRR765982.final.vcf)]), (RodBindingCollection [(RodBinding name=variant9 source=SRR765992.final.vcf)]), (RodBindingCollection [(RodBinding name=variant10 source=SRR764760.final.vcf)]), (RodBindingCollection [(RodBinding name=variant11 source=SRR764761.final.vcf)])] out=/data2/cllorens2/10_pon/HPON.vcf genotypemergeoption=UNIQUIFY filteredrecordsmergetype=KEEP_IF_ANY_UNFILTERED multipleallelesmergetype=BY_TYPE rod_priority_list=null printComplexMerges=false filteredAreUncalled=true minimalVCF=false excludeNonVariants=false setKey=set assumeIdenticalSamples=false minimumN=1 suppressCommandLineHeader=false mergeInfoWithMaxAC=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP Membership">
##INFO=<ID=MQ0,Number=1,Type=Integer,Description="Total Mapping Quality Zero Reads">
##INFO=<ID=SOMATIC,Number=0,Type=Flag,Description="Somatic event">
##INFO=<ID=VT,Number=1,Type=String,Description="Variant type, can be SNP, INS or DEL">
##INFO=<ID=set,Number=1,Type=String,Description="Source VCF for the merged record in CombineVariants">
##MuTect="analysis_type=MuTect input_file=[/data1/cllorens2/humanos/9_PON/SRR768529.final.bam] read_buffer_size=null phone_home=STANDARD gatk_key=null tag=NA read_filter=[] intervals=[intervals_list.intervals] excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/data1/cllorens2/scripts/bundle_hg19/ucsc.hg19.fasta nonDeterministicRandomSeed=false disableRandomization=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=200 enable_experimental_downsampling=false baq=OFF baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 defaultBaseQualities=-1 validation_strictness=SILENT remove_program_records=false keep_program_records=false unsafe=null num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false logging_level=INFO log_to_file=null help=false noop=false enable_extended_output=false artifact_detection_mode=true tumor_sample_name=sampleSRR768529 bam_tumor_sample_name=null normal_sample_name=none force_output=false force_alleles=false only_passing_calls=false initial_tumor_lod=4.0 tumor_lod=6.3 fraction_contamination=0.02 minimum_mutation_cell_fraction=0.0 normal_lod=-3.4028235E38 normal_artifact_lod=3.4028235E38 strand_artifact_lod=2.0 strand_artifact_power_threshold=0.9 dbsnp_normal_lod=-3.4028235E38 somatic_classification_normal_power_threshold=0.95 minimum_normal_allele_fraction=0.0 tumor_f_pretest=0.005 min_qscore=5 gap_events_threshold=3 heavily_clipped_read_fraction=0.3 clipping_bias_pvalue_threshold=0.05 fraction_mapq0_threshold=0.5 pir_median_threshold=10.0 pir_mad_threshold=3.0 required_maximum_alt_allele_mapping_quality_score=20 max_alt_alleles_in_normal_count=2 max_alt_alleles_in_normal_qscore_sum=20 max_alt_allele_in_normal_fraction=0.03 power_constant_qscore=30 absolute_copy_number_data=null power_constant_af=0.30000001192092896 vcf=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub no_cmdline_in_header=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub bcf=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub dbsnp=[(RodBinding name=dbsnp source=/data1/cllorens2/scripts/bundle_hg19/dbsnp_138.hg19.vcf)] cosmic=[(RodBinding name=cosmic source=/data1/cllorens2/scripts/bundle_hg19/WGSCoding19.vcf)] normal_panel=[] coverage_20_q20_file=null power_file=null tumor_depth_file=null normal_depth_file=null filter_mismatching_base_and_quals=false"
##contig=<ID=chrM,length=16571,assembly=hg19>
##contig=<ID=chr1,length=249250621,assembly=hg19>
##contig=<ID=chr2,length=243199373,assembly=hg19>
##contig=<ID=chr3,length=198022430,assembly=hg19>
##contig=<ID=chr4,length=191154276,assembly=hg19>
##contig=<ID=chr5,length=180915260,assembly=hg19>
##contig=<ID=chr6,length=171115067,assembly=hg19>
##contig=<ID=chr7,length=159138663,assembly=hg19>
##contig=<ID=chr8,length=146364022,assembly=hg19>
##contig=<ID=chr9,length=141213431,assembly=hg19>
##contig=<ID=chr10,length=135534747,assembly=hg19>
##contig=<ID=chr11,length=135006516,assembly=hg19>
##contig=<ID=chr12,length=133851895,assembly=hg19>
##contig=<ID=chr13,length=115169878,assembly=hg19>
##contig=<ID=chr14,length=107349540,assembly=hg19>
##contig=<ID=chr15,length=102531392,assembly=hg19>
##contig=<ID=chr16,length=90354753,assembly=hg19>
##contig=<ID=chr17,length=81195210,assembly=hg19>
##contig=<ID=chr18,length=78077248,assembly=hg19>
##contig=<ID=chr19,length=59128983,assembly=hg19>
##contig=<ID=chr20,length=63025520,assembly=hg19>
##contig=<ID=chr21,length=48129895,assembly=hg19>
##contig=<ID=chr22,length=51304566,assembly=hg19>
##contig=<ID=chrX,length=155270560,assembly=hg19>
##contig=<ID=chrY,length=59373566,assembly=hg19>
##contig=<ID=chr1_gl000191_random,length=106433,assembly=hg19>
##contig=<ID=chr1_gl000192_random,length=547496,assembly=hg19>
##contig=<ID=chr4_ctg9_hap1,length=590426,assembly=hg19>
##contig=<ID=chr4_gl000193_random,length=189789,assembly=hg19>
##contig=<ID=chr4_gl000194_random,length=191469,assembly=hg19>
##contig=<ID=chr6_apd_hap1,length=4622290,assembly=hg19>
##contig=<ID=chr6_cox_hap2,length=4795371,assembly=hg19>
##contig=<ID=chr6_dbb_hap3,length=4610396,assembly=hg19>
##contig=<ID=chr6_mann_hap4,length=4683263,assembly=hg19>
##contig=<ID=chr6_mcf_hap5,length=4833398,assembly=hg19>
##contig=<ID=chr6_qbl_hap6,length=4611984,assembly=hg19>
##contig=<ID=chr6_ssto_hap7,length=4928567,assembly=hg19>
##contig=<ID=chr7_gl000195_random,length=182896,assembly=hg19>
##contig=<ID=chr8_gl000196_random,length=38914,assembly=hg19>
##contig=<ID=chr8_gl000197_random,length=37175,assembly=hg19>
##contig=<ID=chr9_gl000198_random,length=90085,assembly=hg19>
##contig=<ID=chr9_gl000199_random,length=169874,assembly=hg19>
##contig=<ID=chr9_gl000200_random,length=187035,assembly=hg19>
##contig=<ID=chr9_gl000201_random,length=36148,assembly=hg19>
##contig=<ID=chr11_gl000202_random,length=40103,assembly=hg19>
##contig=<ID=chr17_ctg5_hap1,length=1680828,assembly=hg19>
##contig=<ID=chr17_gl000203_random,length=37498,assembly=hg19>
##contig=<ID=chr17_gl000204_random,length=81310,assembly=hg19>
##contig=<ID=chr17_gl000205_random,length=174588,assembly=hg19>
##contig=<ID=chr17_gl000206_random,length=41001,assembly=hg19>
##contig=<ID=chr18_gl000207_random,length=4262,assembly=hg19>
##contig=<ID=chr19_gl000208_random,length=92689,assembly=hg19>
##contig=<ID=chr19_gl000209_random,length=159169,assembly=hg19>
##contig=<ID=chr21_gl000210_random,length=27682,assembly=hg19>
##contig=<ID=chrUn_gl000211,length=166566,assembly=hg19>
##contig=<ID=chrUn_gl000212,length=186858,assembly=hg19>
##contig=<ID=chrUn_gl000213,length=164239,assembly=hg19>
##contig=<ID=chrUn_gl000214,length=137718,assembly=hg19>
##contig=<ID=chrUn_gl000215,length=172545,assembly=hg19>
##contig=<ID=chrUn_gl000216,length=172294,assembly=hg19>
##contig=<ID=chrUn_gl000217,length=172149,assembly=hg19>
##contig=<ID=chrUn_gl000218,length=161147,assembly=hg19>
##contig=<ID=chrUn_gl000219,length=179198,assembly=hg19>
##contig=<ID=chrUn_gl000220,length=161802,assembly=hg19>
##contig=<ID=chrUn_gl000221,length=155397,assembly=hg19>
##contig=<ID=chrUn_gl000222,length=186861,assembly=hg19>
##contig=<ID=chrUn_gl000223,length=180455,assembly=hg19>
##contig=<ID=chrUn_gl000224,length=179693,assembly=hg19>
##contig=<ID=chrUn_gl000225,length=211173,assembly=hg19>
##contig=<ID=chrUn_gl000226,length=15008,assembly=hg19>
##contig=<ID=chrUn_gl000227,length=128374,assembly=hg19>
##contig=<ID=chrUn_gl000228,length=129120,assembly=hg19>
##contig=<ID=chrUn_gl000229,length=19913,assembly=hg19>
##contig=<ID=chrUn_gl000230,length=43691,assembly=hg19>
##contig=<ID=chrUn_gl000231,length=27386,assembly=hg19>
##contig=<ID=chrUn_gl000232,length=40652,assembly=hg19>
##contig=<ID=chrUn_gl000233,length=45941,assembly=hg19>
##contig=<ID=chrUn_gl000234,length=40531,assembly=hg19>
##contig=<ID=chrUn_gl000235,length=34474,assembly=hg19>
##contig=<ID=chrUn_gl000236,length=41934,assembly=hg19>
##contig=<ID=chrUn_gl000237,length=45867,assembly=hg19>
##contig=<ID=chrUn_gl000238,length=39939,assembly=hg19>
##contig=<ID=chrUn_gl000239,length=33824,assembly=hg19>
##contig=<ID=chrUn_gl000240,length=41933,assembly=hg19>
##contig=<ID=chrUn_gl000241,length=42152,assembly=hg19>
##contig=<ID=chrUn_gl000242,length=43523,assembly=hg19>
##contig=<ID=chrUn_gl000243,length=43341,assembly=hg19>
##contig=<ID=chrUn_gl000244,length=39929,assembly=hg19>
##contig=<ID=chrUn_gl000245,length=36651,assembly=hg19>
##contig=<ID=chrUn_gl000246,length=38154,assembly=hg19>
##contig=<ID=chrUn_gl000247,length=36422,assembly=hg19>
##contig=<ID=chrUn_gl000248,length=39786,assembly=hg19>
##contig=<ID=chrUn_gl000249,length=38502,assembly=hg19>
##reference=file:///data2/cllorens2/10_pon/ucsc.hg19.fasta
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	none.variant	none.variant10	none.variant11	none.variant2	none.variant3	none.variant4	none.variant5	none.variant6	none.variant7	none.variant8	none.variant9	sampleSRR764760.variant10	sampleSRR764761.variant11	sampleSRR765982.variant8	sampleSRR765992.variant9	sampleSRR766005.variant7	sampleSRR766011.variant6	sampleSRR766027.variant5	sampleSRR766062.variant4	sampleSRR768529.variant3	sampleSRR768530.variant2	sampleSRR768531.variant
chr1	30376	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:83,10:33:93:0.108:2	0/1:54,6:32:60:0.100:2	./.	0/1:114,7:31:121:0.058:2	0/1:66,8:28:74:0.108:2	0/1:124,4:32:128:0.031:2	0/1:50,10:31:60:0.167:2	./.	0/1:121,10:32:131:0.076:2	0/1:80,8:32:88:0.091:2	0/1:182,14:32:196:0.071:2
chr1	30411	.	G	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:63,36:33:99:0.364:2	0/1:57,13:33:70:0.186:2	./.	0/1:100,16:32:116:0.138:2	0/1:64,16:31:80:0.200:2	0/1:107,16:32:123:0.130:2	0/1:36,21:32:59:0.368:2	0/1:56,15:31:71:0.211:2	0/1:100,29:33:129:0.225:2	0/1:65,17:33:82:0.207:2	0/1:164,27:33:191:0.141:2
chr1	30489	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:117,12:32:129:0.093:2	0/1:88,11:32:99:0.111:2	./.	./.	./.	0/1:169,8:31:177:0.045:2	./.	0/1:107,4:32:111:0.036:2	0/1:161,13:33:174:0.075:2	0/1:98,8:31:106:0.075:2	0/1:186,13:30:199:0.065:2
chr1	35142	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,12:32:167:0.072:2	./.	./.	./.
chr1	35172	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:136,4:31:140:0.029:2	./.	./.	./.	./.	0/1:109,6:30:115:0.052:2	./.	./.	./.	./.
chr1	69270	rs201219564	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:129,53:30:183:0.291:2	0/1:137,57:28:194:0.294:2	0/1:104,42:29:146:0.288:2	./.	0/1:177,12:29:189:0.063:2	0/1:171,19:31:190:0.100:2	0/1:170,27:31:197:0.137:2	0/1:159,36:29:195:0.185:2	0/1:161,22:32:186:0.120:2	0/1:152,34:32:187:0.183:2	0/1:164,23:29:190:0.123:2
chr1	69369	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,19:31:197:0.096:2	./.	./.	./.
chr1	69428	rs140739101	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,12:31:82:0.146:2	./.	0/1:192,5:31:197:0.025:2	./.	./.	./.	0/1:193,5:29:198:0.025:2	0/1:178,6:30:184:0.033:2
chr1	69511	rs75062661	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,187:29:188:1.00:2	0/1:0,179:29:179:1.00:2	0/1:0,103:29:103:1.00:2	0/1:1,4:31:5:0.800:2	0/1:1,183:29:184:0.995:2	0/1:0,183:29:183:1.00:2	0/1:0,190:29:190:1.00:2	0/1:1,181:29:182:0.995:2	0/1:0,179:29:179:1.00:2	0/1:1,187:28:188:0.995:2	0/1:1,187:28:188:0.995:2
chr1	69552	rs55874132	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,33:34:193:0.171:2	./.	./.
chr1	69569	rs372127752	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:32:9:0.333:2	./.	./.	./.	./.	./.	./.	./.
chr1	69761	rs200505207	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,17:31:197:0.086:2	./.	0/1:168,26:32:194:0.134:2	0/1:172,23:33:195:0.118:2	./.	./.
chr1	69768	rs373014042	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,4:33:189:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr1	69849	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,21:30:199:0.106:2	./.	./.	./.	./.	./.
chr1	69897	rs200676709	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:131,67:30:198:0.338:2	0/1:125,72:29:197:0.365:2	0/1:40,21:29:61:0.344:2	./.	0/1:172,26:29:198:0.131:2	0/1:171,23:30:194:0.119:2	0/1:162,37:30:199:0.186:2	0/1:159,38:29:197:0.193:2	0/1:164,34:31:198:0.172:2	0/1:172,27:30:199:0.136:2	0/1:156,37:30:193:0.192:2
chr1	69932	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,19:29:197:0.096:2	0/1:168,28:30:196:0.143:2	./.	./.	./.	./.
chr1	762109	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,22:31:196:0.112:2	./.	./.	./.	./.
chr1	762273	rs3115849	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,113:32:113:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,131:32:131:1.00:2	0/1:105,82:30:187:0.439:2	0/1:3,149:32:152:0.980:2	0/1:2,166:32:168:0.988:2	0/1:1,138:31:139:0.993:2	0/1:0,135:32:135:1.00:2	0/1:76,51:32:127:0.402:2	0/1:0,122:32:122:1.00:2
chr1	762307	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:152,6:32:158:0.038:2	0/1:105,5:30:110:0.045:2	./.	0/1:180,6:30:187:0.032:2	./.	./.	./.	./.	./.	./.	0/1:149,5:33:155:0.032:2
chr1	762330	rs74045217	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:176,17:30:193:0.088:2	0/1:102,10:31:112:0.089:2	./.	0/1:177,11:30:188:0.059:2	./.	./.	0/1:183,7:30:190:0.037:2	./.	0/1:181,12:31:193:0.062:2	./.	0/1:152,20:30:172:0.116:2
chr1	762345	rs74045218	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:173,21:26:194:0.108:2	0/1:103,13:27:116:0.112:2	./.	0/1:176,19:28:195:0.097:2	./.	./.	0/1:187,10:26:197:0.051:2	./.	0/1:178,16:28:194:0.082:2	./.	0/1:154,25:24:179:0.140:2
chr1	762472	rs145493205	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:171,11:29:182:0.060:2	./.	./.	./.	./.	0/1:157,18:28:175:0.103:2	./.
chr1	762485	rs148989274	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:158,13:29:171:0.076:2	./.	./.	./.	./.	0/1:145,23:29:168:0.137:2	./.
chr1	762569	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,11:32:93:0.118:2	./.	./.	./.	./.	./.	./.	./.
chr1	762579	.	G	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,5:28:74:0.068:2	0/1:42,6:27:48:0.125:2	0/1:13,4:28:17:0.235:2	0/1:72,9:25:81:0.111:2	./.	0/1:55,19:25:74:0.257:2	./.	./.	0/1:62,16:27:78:0.205:2	./.	0/1:40,7:23:47:0.149:2
chr1	762589	rs71507461	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,42:27:52:0.808:2	0/1:10,22:27:32:0.688:2	0/1:4,9:27:13:0.692:2	0/1:8,44:26:52:0.846:2	0/1:59,30:26:89:0.337:2	0/1:15,36:28:51:0.706:2	0/1:2,44:28:46:0.957:2	0/1:1,52:27:53:0.981:2	0/1:14,40:27:54:0.741:2	0/1:56,11:26:67:0.164:2	0/1:8,18:28:26:0.692:2
chr1	762592	rs71507462	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,42:30:53:0.792:2	0/1:11,21:29:32:0.656:2	0/1:4,9:31:13:0.692:2	0/1:8,43:30:51:0.843:2	0/1:59,29:29:89:0.330:2	0/1:15,36:28:51:0.706:2	0/1:2,44:29:46:0.957:2	0/1:1,52:30:53:0.981:2	0/1:13,39:31:52:0.750:2	0/1:56,11:31:67:0.164:2	0/1:7,18:29:25:0.720:2
chr1	762601	rs71507463	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,41:32:52:0.788:2	0/1:11,24:33:35:0.686:2	0/1:4,11:32:15:0.733:2	0/1:8,45:32:53:0.849:2	0/1:55,32:32:87:0.368:2	0/1:15,45:32:60:0.750:2	0/1:2,51:32:53:0.962:2	0/1:1,59:32:60:0.983:2	0/1:15,38:33:53:0.717:2	0/1:57,12:32:69:0.174:2	0/1:9,17:32:26:0.654:2
chr1	762632	rs61768173	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,28:33:37:0.757:2	0/1:8,24:32:32:0.750:2	0/1:2,7:33:9:0.778:2	0/1:6,38:32:44:0.864:2	0/1:58,37:31:96:0.389:2	0/1:7,53:30:60:0.883:2	0/1:1,63:31:64:0.984:2	0/1:1,50:32:51:0.980:2	0/1:6,40:34:47:0.870:2	0/1:45,15:32:60:0.250:2	0/1:6,30:30:36:0.833:2
chr1	762815	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,12:28:66:0.182:2	./.	./.	./.	./.
chr1	762852	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,17:30:78:0.218:2	./.	./.	./.	./.
chr1	762886	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,16:33:72:0.222:2	./.	./.	./.	./.
chr1	877831	rs6672356	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.
chr1	878331	rs148327885	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,31:32:50:0.620:2	0/1:4,12:30:16:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	879317	rs7523549	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,17:30:30:0.567:2	./.
chr1	880502	rs74047418	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,42:33:79:0.532:2	./.	./.	./.	./.
chr1	881627	rs2272757	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,25:31:53:0.472:2	0/1:13,17:31:30:0.567:2	0/1:0,5:31:5:1.00:2	0/1:50,44:32:94:0.468:2	0/1:36,36:32:72:0.500:2	./.	0/1:44,19:32:63:0.302:2	0/1:43,50:31:93:0.538:2	./.	0/1:35,24:32:59:0.407:2	0/1:24,42:31:66:0.636:2
chr1	886591	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,5:32:132:0.038:2	./.	./.	./.
chr1	887801	rs3828047	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:32:36:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,31:32:31:1.00:2	0/1:29,24:32:53:0.453:2	0/1:0,35:32:35:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,22:31:22:1.00:2
chr1	888563	rs150127608	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:153,4:31:157:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr1	888639	rs201746872	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,109:32:109:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,167:32:168:1.00:2	0/1:0,148:32:148:1.00:2	0/1:0,166:32:166:1.00:2	0/1:102,69:31:171:0.404:2	0/1:0,131:32:131:1.00:2	0/1:0,164:33:164:1.00:2	0/1:0,120:32:120:1.00:2	0/1:0,179:32:179:1.00:2
chr1	888659	rs3748597	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:31:95:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,165:32:165:1.00:2	0/1:1,134:31:135:0.993:2	0/1:0,163:32:163:1.00:2	0/1:91,63:31:154:0.409:2	0/1:0,133:32:133:1.00:2	0/1:0,159:32:159:1.00:2	0/1:0,118:31:118:1.00:2	0/1:0,147:31:147:1.00:2
chr1	889238	rs3828049	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,36:30:66:0.545:2	./.	./.	./.	./.
chr1	891486	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:33:74:0.054:2	./.
chr1	891528	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:32:70:0.057:2	./.
chr1	891550	rs370709441	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:31:50:0.080:2	./.
chr1	892309	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,4:31:72:0.056:2	./.	./.	./.	./.	./.	./.
chr1	892323	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,4:32:73:0.055:2	./.	./.	./.	./.	./.	./.
chr1	894573	rs13303010	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:31:37:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,38:30:38:1.00:2	0/1:16,20:32:36:0.556:2	0/1:0,59:31:59:1.00:2	0/1:0,31:32:31:1.00:2	0/1:17,8:31:25:0.320:2	0/1:0,29:30:29:1.00:2
chr1	897325	rs4970441	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:32:76:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,136:32:136:1.00:2	0/1:2,175:32:177:0.989:2	0/1:0,157:32:157:1.00:2	0/1:86,73:32:159:0.459:2	0/1:0,162:31:162:1.00:2	0/1:2,153:33:155:0.987:2	0/1:0,108:32:108:1.00:2	0/1:0,92:31:92:1.00:2
chr1	897738	rs6696971	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,21:31:49:0.429:2	./.	./.	./.	./.
chr1	898086	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,5:31:8:0.625:2
chr1	900505	rs28705211	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,30:29:66:0.455:2	0/1:15,15:30:30:0.500:2	./.	0/1:44,64:30:109:0.593:2	0/1:67,69:30:136:0.507:2	0/1:4,100:30:104:0.962:2	./.	0/1:53,65:30:118:0.551:2	0/1:0,88:31:88:1.00:2	./.	0/1:21,27:30:48:0.563:2
chr1	906272	rs28507236	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:31:3:1.00:2
chr1	908319	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,8:16:37:0.216:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	908325	rs181207265	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,8:18:37:0.216:2	./.	./.	./.	./.	0/1:29,6:17:35:0.171:2	./.	0/1:51,13:15:65:0.203:2	./.	0/1:32,7:15:39:0.179:2	0/1:17,5:22:22:0.227:2
chr1	909238	rs3829740	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,19:33:31:0.613:2	0/1:13,12:32:25:0.480:2	0/1:5,4:34:9:0.444:2	0/1:0,89:32:89:1.00:2	0/1:29,24:31:53:0.453:2	0/1:1,67:32:68:0.985:2	0/1:19,14:31:33:0.424:2	0/1:35,23:31:58:0.397:2	0/1:20,17:34:37:0.459:2	./.	0/1:0,33:32:33:1.00:2
chr1	909309	rs3829738	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,55:32:57:0.965:2	./.	./.	0/1:22,9:34:31:0.290:2	./.	./.
chr1	909768	rs2340593	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:52:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,75:33:75:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,74:33:74:1.00:2	0/1:0,46:32:46:1.00:2	0/1:1,64:33:65:0.985:2
chr1	911595	rs7417106	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,15:28:15:1.00:2	0/1:0,13:29:13:1.00:2	0/1:0,4:30:4:1.00:2	0/1:1,24:29:25:0.960:2	0/1:0,24:28:24:1.00:2	./.	0/1:0,26:28:26:1.00:2	0/1:1,20:29:21:0.952:2	./.	0/1:14,6:28:20:0.300:2	0/1:0,10:27:10:1.00:2
chr1	911916	rs74045046	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,85:30:85:1.00:2	./.	./.	0/1:53,50:31:103:0.485:2	./.	./.
chr1	914333	rs13302979	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,4:31:4:1.00:2	0/1:0,7:32:7:1.00:2	./.	0/1:0,12:32:12:1.00:2	./.	./.	./.	./.	./.	0/1:5,4:30:9:0.444:2	0/1:0,5:33:5:1.00:2
chr1	914582	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,21:30:36:0.583:2	./.	./.	./.	./.	./.	./.	./.
chr1	914727	rs181798425	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:31:8:0.625:2	./.	./.	./.	./.	./.	./.	./.
chr1	914839	rs34903276	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,12:31:25:0.480:2
chr1	914852	rs13303368	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:32:22:1.00:2	0/1:0,11:32:11:1.00:2	0/1:1,4:34:5:0.800:2	0/1:2,22:32:24:0.917:2	0/1:33,14:32:47:0.298:2	./.	0/1:21,6:31:27:0.222:2	0/1:16,11:32:27:0.407:2	./.	0/1:14,5:31:19:0.263:2	0/1:0,33:30:33:1.00:2
chr1	914876	rs13302983	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:30:31:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,64:29:64:1.00:2	0/1:0,63:30:63:1.00:2	0/1:1,48:29:49:0.980:2	0/1:0,38:29:38:1.00:2	0/1:40,24:30:64:0.375:2	0/1:18,8:30:26:0.308:2	0/1:0,52:29:52:1.00:2
chr1	914940	rs13303033	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:27:28:1.00:2	0/1:0,23:28:23:1.00:2	0/1:5,3:29:8:0.375:2	0/1:1,52:29:53:0.981:2	0/1:34,16:26:50:0.320:2	./.	0/1:31,19:28:50:0.380:2	0/1:32,12:28:44:0.273:2	./.	0/1:23,11:29:34:0.324:2	0/1:0,43:27:43:1.00:2
chr1	915227	rs13303355	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:32:87:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,9:32:9:1.00:2	0/1:1,91:32:92:0.989:2	0/1:0,143:31:143:1.00:2	0/1:0,91:32:92:1.00:2	0/1:1,136:32:137:0.993:2	0/1:0,96:32:96:1.00:2	0/1:48,43:34:91:0.473:2	0/1:37,24:31:61:0.393:2	0/1:0,74:32:74:1.00:2
chr1	915246	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,16:10:85:0.188:2	./.	./.	./.	./.	./.	./.	./.
chr1	915388	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:156,6:25:162:0.037:2	./.	./.	./.	0/1:149,5:31:154:0.032:2	./.	./.	0/1:143,4:31:147:0.027:2
chr1	915440	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,6:28:100:0.061:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	915449	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,7:30:137:0.051:2	0/1:102,4:31:106:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	915460	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,6:26:123:0.049:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	916549	rs6660139	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,42:29:42:1.00:2	0/1:0,23:27:23:1.00:2	./.	0/1:1,66:28:67:0.985:2	0/1:34,33:28:67:0.493:2	0/1:0,64:28:64:1.00:2	0/1:32,23:28:55:0.418:2	0/1:46,36:27:82:0.439:2	0/1:31,36:29:67:0.537:2	0/1:29,19:29:48:0.396:2	0/1:0,43:27:44:1.00:2
chr1	935222	rs2298214	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	948921	rs15842	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:30:85:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,95:30:95:1.00:2	0/1:0,118:30:120:1.00:2	0/1:0,100:30:100:1.00:2	0/1:0,110:31:110:1.00:2	0/1:0,127:30:128:1.00:2	0/1:0,97:30:97:1.00:2	0/1:49,40:29:89:0.449:2	0/1:0,59:30:59:1.00:2
chr1	949608	rs1921	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:31:12:0.583:2	./.	0/1:59,43:30:102:0.422:2	0/1:59,45:31:104:0.433:2	0/1:65,18:31:83:0.217:2	0/1:60,60:30:120:0.500:2	0/1:50,31:31:81:0.383:2	./.	./.
chr1	949654	rs8997	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:32:49:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,56:30:56:1.00:2	0/1:1,77:31:78:0.987:2	0/1:0,62:32:63:1.00:2	0/1:39,31:30:70:0.443:2	0/1:0,42:30:42:1.00:2
chr1	970691	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:31:66:0.061:2
chr1	978762	rs138288952	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	981931	rs2465128	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:30:7:1.00:2	0/1:0,3:26:3:1.00:2	./.	./.	0/1:0,2:34:2:1.00:2	0/1:0,2:31:2:1.00:2	./.	0/1:0,7:30:7:1.00:2	./.	0/1:4,6:27:10:0.600:2	./.
chr1	982062	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	./.
chr1	982994	rs10267	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,87:32:87:1.00:2	0/1:0,63:31:63:1.00:2	./.	0/1:2,176:32:178:0.989:2	0/1:0,90:32:90:1.00:2	0/1:2,132:32:134:0.985:2	0/1:0,125:32:125:1.00:2	0/1:0,166:32:166:1.00:2	0/1:119,72:33:191:0.377:2	0/1:74,39:32:113:0.345:2	0/1:1,126:33:127:0.992:2
chr1	984302	rs9442391	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,29:31:29:1.00:2	0/1:0,11:32:11:1.00:2	./.	0/1:0,20:30:20:1.00:2	./.	./.	0/1:1,12:30:13:0.923:2	0/1:0,26:31:26:1.00:2	0/1:24,17:33:41:0.415:2	0/1:19,20:31:39:0.513:2	0/1:0,10:32:10:1.00:2
chr1	984971	rs111818381	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,13:30:26:0.500:2	./.	./.	./.	./.	./.
chr1	985855	rs147990356	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,48:30:99:0.485:2	./.	./.	./.	./.	./.
chr1	986443	rs2710887	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:32:36:1.00:2	0/1:0,28:32:28:1.00:2	0/1:6,9:32:15:0.600:2	0/1:0,51:31:51:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,76:31:76:1.00:2	0/1:0,80:32:80:1.00:2	0/1:1,91:32:92:0.989:2	0/1:31,31:31:62:0.500:2	0/1:41,25:32:66:0.379:2	0/1:0,68:32:68:1.00:2
chr1	987200	rs9803031	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,118:31:118:1.00:2	0/1:0,69:31:69:1.00:2	0/1:17,6:31:23:0.261:2	0/1:0,151:31:152:1.00:2	0/1:1,149:31:150:0.993:2	0/1:0,128:31:128:1.00:2	0/1:0,139:31:139:1.00:2	0/1:4,140:31:144:0.972:2	0/1:84,77:32:161:0.478:2	0/1:54,76:31:131:0.585:2	0/1:0,110:31:110:1.00:2
chr1	989281	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:32:121:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	990280	rs4275402	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:31:23:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,10:30:10:1.00:2	./.	0/1:0,9:30:9:1.00:2	0/1:0,19:29:19:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,6:25:6:1.00:2
chr1	1019753	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,10:11:33:0.303:2	./.	./.	./.
chr1	1021346	rs10907177	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,16:32:33:0.485:2	0/1:12,10:30:22:0.455:2	./.	./.	./.	0/1:33,19:33:52:0.365:2	./.	./.	./.	./.	./.
chr1	1026707	rs4074137	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,25:31:26:0.962:2	0/1:0,21:31:21:1.00:2	./.	0/1:2,43:31:45:0.956:2	0/1:9,19:29:28:0.679:2	./.	0/1:16,13:32:29:0.448:2	0/1:0,35:31:35:1.00:2	./.	0/1:17,15:32:32:0.469:2	0/1:0,12:31:12:1.00:2
chr1	1026870	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:33:62:0.065:2	./.
chr1	1026913	rs115662838	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,29:31:50:0.580:2	0/1:21,5:32:26:0.192:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	1115510	rs114359609	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,30:32:54:0.556:2	./.	./.	./.	./.	./.
chr1	1115548	rs114390380	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:32:9:0.444:2	./.	0/1:18,47:32:65:0.723:2	./.	./.	./.	./.	./.	./.
chr1	1116231	rs13374146	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,20:29:49:0.408:2	./.	./.	./.	./.	./.	./.	./.
chr1	1118275	rs61733845	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,64:30:136:0.471:2	./.	./.	./.	./.	./.	./.	./.
chr1	1120377	rs116321663	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,36:32:70:0.514:2	0/1:17,14:31:31:0.452:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	1120431	rs1320571	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,75:31:178:0.421:2	./.	./.	./.	0/1:115,78:31:193:0.404:2	./.	./.	./.
chr1	1132938	rs2274791	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	1140871	rs142770542	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,38:29:96:0.396:2	./.	./.	./.	./.
chr1	1147422	rs17568	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:27,28:30:55:0.509:2	0/1:16,16:31:32:0.500:2	./.	0/1:34,33:28:67:0.493:2	./.	./.	./.	0/1:35,23:29:58:0.397:2	./.	./.	./.
chr1	1148445	rs34160451	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,15:29:50:0.300:2	./.	./.	./.
chr1	1149164	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	1153113	rs12036216	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,15:30:30:0.500:2	./.	./.	./.
chr1	1158631	rs6603781	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,150:29:151:1.00:2	0/1:2,103:28:105:0.981:2	0/1:1,22:29:23:0.957:2	0/1:106,82:28:188:0.436:2	0/1:1,188:29:189:0.995:2	0/1:105,82:29:187:0.439:2	0/1:0,178:29:178:1.00:2	0/1:1,175:28:176:0.994:2	0/1:103,88:29:191:0.461:2	0/1:0,181:28:181:1.00:2	0/1:0,172:27:172:1.00:2
chr1	1178245	rs11260566	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,28:30:70:0.400:2	./.	./.	./.
chr1	1178482	rs78555129	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,10:30:39:0.256:2	./.	./.	./.
chr1	1178855	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:32:58:0.069:2	./.	./.	./.
chr1	1178925	rs12093154	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,9:30:17:0.529:2	./.	./.	./.
chr1	1179800	rs115586508	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,40:29:71:0.563:2	./.	./.	./.
chr1	1219360	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,4:31:67:0.060:2	./.	./.	./.	./.	./.	./.	./.
chr1	1220954	rs12751100	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:32:199:0.020:2	./.	./.	./.
chr1	1220988	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,66:29:184:0.359:2	./.	./.	./.	./.	./.
chr1	1222963	rs74735644	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,10:32:16:0.625:2	./.
chr1	1226348	rs373520165	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,46:27:91:0.505:2	./.	./.	./.	./.
chr1	1226507	rs183010802	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,10:27:15:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	1229261	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	1231587	rs139600717	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,45:30:86:0.523:2	./.	./.	./.
chr1	1246004	rs2296474	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:32:35:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,63:32:64:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,47:32:47:1.00:2	0/1:45,27:32:72:0.375:2
chr1	1246303	rs41285824	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,50:32:92:0.549:2	./.	./.	./.	0/1:49,30:33:79:0.380:2	./.
chr1	1247494	rs12103	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,12:29:12:1.00:2	0/1:0,14:27:14:1.00:2	0/1:1,3:30:4:0.750:2	0/1:1,34:29:35:0.971:2	0/1:0,34:29:34:1.00:2	0/1:0,27:28:27:1.00:2	0/1:26,9:29:35:0.257:2	0/1:0,30:29:30:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,25:28:25:1.00:2	0/1:18,6:21:24:0.250:2
chr1	1248283	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:34:94:0.043:2	./.	./.
chr1	1248469	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:32:35:0.114:2	./.	./.	./.	./.	./.
chr1	1249187	rs12142199	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,110:32:110:1.00:2	0/1:0,75:32:76:1.00:2	0/1:12,11:32:23:0.478:2	0/1:0,174:32:174:1.00:2	0/1:3,189:31:192:0.984:2	0/1:0,183:31:183:1.00:2	0/1:120,75:32:195:0.385:2	0/1:6,178:32:184:0.967:2	0/1:3,160:33:163:0.982:2	0/1:1,149:32:150:0.993:2	0/1:87,98:32:185:0.530:2
chr1	1254436	rs1886773	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:27:44:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,13:28:13:1.00:2	0/1:0,66:29:67:1.00:2	0/1:0,46:29:46:1.00:2	0/1:0,72:29:72:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,85:29:85:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,61:29:61:1.00:2	0/1:20,16:29:36:0.444:2
chr1	1254443	rs1886772	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,44:32:44:1.00:2	0/1:1,73:32:74:0.986:2	0/1:1,47:31:48:0.979:2	0/1:0,87:32:87:1.00:2	0/1:0,55:33:55:1.00:2	0/1:0,66:33:66:1.00:2	0/1:21,14:33:35:0.400:2
chr1	1254841	rs10907179	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,59:31:59:1.00:2	0/1:1,86:32:87:0.989:2	0/1:0,66:31:66:1.00:2	0/1:1,71:32:72:0.986:2	0/1:0,76:31:76:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,41:32:41:1.00:2	0/1:26,21:32:47:0.447:2
chr1	1257286	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,13:15:166:0.079:2	./.	./.	./.	./.
chr1	1257289	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,10:17:171:0.059:2	./.	./.	./.	./.
chr1	1262635	rs142934629	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:33:7:0.571:2
chr1	1262966	rs307349	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,4:33:4:1.00:2	0/1:0,5:31:5:1.00:2	./.	0/1:0,7:31:7:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,4:28:4:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.
chr1	1263144	rs307350	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,11:31:11:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,11:30:11:1.00:2	0/1:4,8:32:12:0.667:2
chr1	1266738	rs76755863	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:48,31:30:79:0.392:2	0/1:35,25:31:60:0.417:2	./.	./.	0/1:87,101:30:188:0.537:2	./.	./.	./.	./.	./.	./.
chr1	1266740	rs141430443	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:50,31:32:81:0.383:2	0/1:36,25:32:61:0.410:2	./.	./.	0/1:88,101:32:189:0.534:2	./.	./.	./.	./.	./.	./.
chr1	1269554	rs307377	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:31:87:1.00:2	0/1:1,34:31:35:0.971:2	0/1:0,20:32:20:1.00:2	0/1:1,122:31:123:0.992:2	0/1:0,99:31:99:1.00:2	0/1:1,105:30:106:0.991:2	0/1:2,82:30:84:0.976:2	0/1:0,104:31:104:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,85:31:85:1.00:2	0/1:33,33:31:66:0.500:2
chr1	1269796	rs150371886	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,6:32:18:0.333:2	./.	./.	./.	./.	./.	./.	./.
chr1	1269802	rs148758835	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,6:33:14:0.429:2	./.	./.
chr1	1275652	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:32:141:0.028:2	./.	./.	./.	./.
chr1	1277533	rs307362	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:26:22:1.00:2	0/1:0,18:28:18:1.00:2	0/1:0,11:28:11:1.00:2	0/1:0,18:27:18:1.00:2	0/1:0,12:29:12:1.00:2	0/1:0,28:27:28:1.00:2	0/1:0,15:28:15:1.00:2	0/1:0,16:28:16:1.00:2	0/1:0,21:28:21:1.00:2	0/1:0,23:27:23:1.00:2	0/1:0,11:27:11:1.00:2
chr1	1288655	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:31:96:0.042:2
chr1	1290156	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:32:55:0.073:2	./.
chr1	1310074	rs2765035	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:31:40:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,55:31:55:1.00:2	0/1:28,33:30:61:0.541:2
chr1	1322672	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,18:31:51:0.353:2
chr1	1325655	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,6:32:115:0.052:2	./.	./.	./.	./.	./.	./.
chr1	1334005	rs370863686	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:33:83:0.048:2	./.
chr1	1334475	rs17851391	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,49:33:99:0.500:2	./.	./.
chr1	1342394	rs11548045	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,35:30:77:0.455:2	./.	./.	./.	0/1:46,36:31:82:0.439:2	./.
chr1	1354515	rs904589	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,37:30:77:0.481:2
chr1	1354594	rs3766165	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:30:9:0.333:2
chr1	1354756	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,22:30:31:0.710:2	./.	./.	./.	./.	./.	./.	./.
chr1	1361530	rs144957058	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:29:13:0.308:2	./.	./.	./.	0/1:1,86:29:87:0.989:2	./.	./.	0/1:31,19:30:50:0.380:2	./.
chr1	1375810	rs4590	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,11:33:20:0.550:2	./.	./.	./.	./.
chr1	1386089	rs149262155	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,49:32:123:0.402:2
chr1	1387432	rs112072883	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,7:33:190:0.037:2	./.	./.	0/1:170,5:33:175:0.029:2
chr1	1387764	rs9793256	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,39:30:42:0.929:2	./.	0/1:90,94:31:184:0.511:2	./.	0/1:111,76:31:187:0.406:2	./.	./.	./.	0/1:88,100:31:188:0.532:2
chr1	1390875	rs1781147	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,11:31:12:0.917:2	./.	0/1:75,61:30:136:0.449:2	./.	0/1:53,80:30:133:0.602:2	./.	./.	./.	0/1:45,38:30:83:0.458:2
chr1	1391655	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,62:30:190:0.328:2	./.	./.
chr1	1391672	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,6:30:23:0.261:2	./.	./.	./.	0/1:141,42:30:183:0.230:2	./.	./.	./.	./.
chr1	1396244	rs150798221	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,46:30:81:0.575:2
chr1	1403776	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:33:95:0.042:2	./.	./.
chr1	1414071	rs200314338	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,45:31:147:0.306:2	./.	./.	./.	0/1:84,46:31:130:0.354:2
chr1	1416236	rs192308564	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,74:31:184:0.402:2
chr1	1418004	rs819972	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,9:32:20:0.450:2	./.	./.	./.	0/1:60,71:32:132:0.542:2	./.	./.	./.	0/1:67,72:32:140:0.518:2
chr1	1420422	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,6:27:187:0.032:2	./.	./.	./.	./.	./.
chr1	1420527	rs1781156	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,3:30:17:0.176:2	./.	./.	./.	0/1:40,5:30:45:0.111:2	./.	./.	./.	0/1:17,22:31:39:0.564:2
chr1	1421531	rs819976	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:30:12:0.500:2	./.	./.	./.	0/1:83,71:31:154:0.461:2	0/1:181,11:32:193:0.057:2	./.	./.	0/1:59,41:32:100:0.410:2
chr1	1421579	rs142840431	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,27:29:77:0.351:2
chr1	1421974	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,23:29:186:0.124:2	./.	./.
chr1	1421991	rs860213	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,19:31:57:0.333:2	./.	./.	./.	0/1:135,59:32:194:0.304:2	./.	./.	./.	./.
chr1	1423267	rs819977	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:30:13:0.462:2	./.	./.	./.	0/1:35,36:27:71:0.507:2	./.	./.	./.	0/1:23,30:27:53:0.566:2
chr1	1425700	rs819980	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:30:13:0.538:2	./.	./.	./.	0/1:80,75:28:155:0.484:2	./.	./.	./.	0/1:49,46:29:95:0.484:2
chr1	1425970	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,37:32:131:0.282:2	./.	./.	./.	./.	./.	./.
chr1	1431048	rs201429000	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,6:27:68:0.088:2	./.	./.	./.	./.	./.
chr1	1431060	rs9792997	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:55,4:32:59:0.068:2	0/1:22,4:31:26:0.154:2	./.	0/1:60,5:32:65:0.077:2	./.	0/1:68,7:30:75:0.093:2	./.	./.	./.	./.	./.
chr1	1431105	rs199599542	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,7:30:65:0.108:2	./.	./.	./.
chr1	1431165	rs9792879	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,19:30:58:0.328:2	./.	0/1:33,18:29:51:0.353:2	./.	0/1:35,19:31:54:0.352:2	./.	0/1:29,22:27:51:0.431:2
chr1	1431166	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,6:32:60:0.100:2	./.	./.	./.	./.	./.
chr1	1451380	rs9439458	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:104,75:32:179:0.419:2	0/1:60,62:32:122:0.508:2	0/1:20,19:34:39:0.487:2	0/1:109,83:32:192:0.432:2	./.	./.	0/1:100,90:33:190:0.474:2	./.	./.	./.	0/1:79,111:32:190:0.584:2
chr1	1451384	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,6:28:190:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr1	1452738	rs35860586	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,56:31:173:0.324:2	./.	./.	./.	0/1:109,16:31:125:0.128:2
chr1	1455577	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,5:30:24:0.208:2	./.	./.
chr1	1455652	rs2767471	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:24,12:28:36:0.333:2	0/1:21,4:27:25:0.160:2	0/1:12,4:31:16:0.250:2	./.	0/1:54,33:30:88:0.379:2	./.	0/1:36,13:30:49:0.265:2	0/1:69,8:29:77:0.104:2	0/1:58,13:27:71:0.183:2	0/1:37,24:30:61:0.393:2	0/1:17,11:30:28:0.393:2
chr1	1458150	rs1135025	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,20:29:32:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	1459703	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,12:26:192:0.063:2	./.	./.
chr1	1459720	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,4:32:75:0.053:2	./.	./.	./.	0/1:180,8:28:188:0.043:2	./.	./.	./.	./.
chr1	1460671	rs149995099	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,35:32:53:0.660:2	./.	./.	./.	./.	./.
chr1	1464630	rs374773488	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:143,8:33:151:0.053:2	./.	./.	./.	./.	./.	./.
chr1	1469399	rs41285842	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,45:30:108:0.421:2	0/1:12,25:29:37:0.676:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	1479324	rs144883680	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,35:30:59:0.593:2	./.	./.	./.	./.	./.
chr1	1479333	rs7533	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:29:4:1.00:2	./.	0/1:30,23:29:53:0.434:2	./.	0/1:3,30:30:33:0.909:2	./.	./.	0/1:0,35:30:35:1.00:2	0/1:30,19:30:49:0.388:2
chr1	1480226	rs116703397	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:31:10:0.400:2	./.	./.	./.	0/1:38,35:31:73:0.479:2	./.	./.	./.	0/1:37,37:30:74:0.500:2
chr1	1551927	rs7418389	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:31:61:1.00:2	0/1:0,39:33:39:1.00:2	0/1:8,8:32:16:0.500:2	0/1:6,113:32:119:0.950:2	0/1:86,82:31:168:0.488:2	0/1:0,110:31:110:1.00:2	0/1:0,136:32:136:1.00:2	0/1:0,107:32:107:1.00:2	0/1:44,43:33:87:0.494:2	0/1:0,71:32:71:1.00:2	0/1:36,33:33:69:0.478:2
chr1	1558792	rs12755088	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,15:27:15:1.00:2	0/1:0,5:27:5:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,19:26:19:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,7:26:7:1.00:2	0/1:0,19:27:19:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,7:28:7:1.00:2	0/1:0,17:26:17:1.00:2
chr1	1562536	rs11544452	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:28:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	1571791	rs201006058	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,5:30:97:0.052:2	0/1:136,4:30:140:0.029:2	./.	./.	./.
chr1	1577141	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,4:29:95:0.042:2	./.	./.	./.	./.	./.	./.
chr1	1577180	rs150540375	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,31:32:124:0.250:2	0/1:103,28:32:131:0.214:2	0/1:135,26:32:161:0.161:2	0/1:91,29:33:120:0.242:2	0/1:96,37:32:134:0.278:2	0/1:87,32:33:119:0.269:2	0/1:72,22:33:94:0.234:2	./.
chr1	1599812	rs12729295	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,8:32:24:0.333:2	./.	0/1:171,23:30:194:0.119:2	0/1:178,16:29:194:0.082:2	0/1:168,26:32:194:0.134:2	0/1:162,25:31:188:0.134:2	0/1:168,24:33:192:0.125:2	0/1:154,34:32:188:0.181:2	./.
chr1	1599888	rs2072923	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:103,29:28:133:0.220:2	0/1:62,19:29:81:0.235:2	./.	0/1:119,38:28:158:0.242:2	0/1:126,25:29:151:0.166:2	0/1:150,41:28:193:0.215:2	0/1:142,16:30:159:0.101:2	0/1:138,39:30:178:0.220:2	0/1:122,26:28:148:0.176:2	0/1:108,31:27:139:0.223:2	0/1:125,28:28:154:0.183:2
chr1	1606981	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,29:31:187:0.155:2	./.
chr1	1607873	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:51,21:31:72:0.292:2	0/1:48,5:32:53:0.094:2	./.	./.	./.	./.	./.	./.	./.	0/1:66,20:31:86:0.233:2	./.
chr1	1608100	.	C	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,27:30:55:0.491:2	0/1:14,15:32:29:0.517:2	0/1:4,5:30:9:0.556:2	0/1:65,24:32:89:0.270:2	0/1:60,17:29:77:0.221:2	0/1:42,36:30:78:0.462:2	0/1:25,49:31:74:0.662:2	0/1:45,40:30:85:0.471:2	0/1:33,27:31:60:0.450:2	0/1:31,35:31:66:0.530:2	0/1:18,41:31:59:0.695:2
chr1	1635004	rs874516	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,20:32:72:0.278:2	0/1:26,34:32:60:0.567:2	0/1:67,54:33:121:0.446:2	0/1:36,41:32:77:0.532:2	0/1:49,45:32:94:0.479:2	0/1:48,57:33:105:0.543:2	0/1:53,29:32:82:0.354:2	./.
chr1	1635749	rs55880629	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,49:31:147:0.336:2	0/1:83,49:31:132:0.371:2	0/1:139,45:30:184:0.245:2	0/1:93,54:29:147:0.367:2	0/1:80,64:31:145:0.444:2	0/1:94,46:32:140:0.329:2	0/1:107,50:30:157:0.318:2	./.
chr1	1636044	rs1059822	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:175,5:32:180:0.028:2	./.	0/1:152,41:31:193:0.212:2	0/1:152,40:32:192:0.208:2	0/1:165,33:31:198:0.167:2	0/1:167,30:31:197:0.152:2	0/1:147,48:31:195:0.246:2	0/1:143,46:32:189:0.243:2	0/1:142,55:32:197:0.279:2	./.
chr1	1640390	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,32:32:150:0.213:2	0/1:86,28:32:114:0.246:2	0/1:99,28:32:127:0.220:2	0/1:99,25:32:124:0.202:2	0/1:94,19:33:113:0.168:2	0/1:84,24:32:108:0.222:2	0/1:86,18:32:105:0.173:2	./.
chr1	1643740	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	1647814	rs72901775	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:121,57:32:179:0.320:2	0/1:74,66:32:140:0.471:2	0/1:20,15:32:35:0.429:2	0/1:113,72:32:185:0.389:2	0/1:113,69:31:182:0.379:2	0/1:141,40:32:181:0.221:2	0/1:128,58:31:186:0.312:2	0/1:121,63:32:184:0.342:2	0/1:111,67:32:178:0.376:2	0/1:127,54:31:181:0.298:2	0/1:72,103:32:175:0.589:2
chr1	1647871	rs72909014	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:109,67:33:176:0.381:2	0/1:85,84:32:169:0.497:2	0/1:23,21:31:44:0.477:2	0/1:98,64:32:162:0.395:2	0/1:95,67:33:163:0.414:2	0/1:121,73:33:194:0.376:2	0/1:121,50:33:171:0.292:2	0/1:108,54:32:162:0.333:2	0/1:101,61:34:162:0.377:2	0/1:93,63:33:156:0.404:2	0/1:58,112:32:170:0.659:2
chr1	1647893	rs144636354	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:145,4:34:149:0.027:2	./.	./.	0/1:143,6:34:149:0.040:2	0/1:131,5:33:136:0.037:2	./.	./.	./.	0/1:168,4:35:172:0.023:2	0/1:156,8:32:164:0.049:2	0/1:130,6:32:136:0.044:2
chr1	1650787	rs1137003	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,17:29:61:0.279:2	0/1:32,7:32:39:0.179:2	./.	0/1:47,15:30:62:0.242:2	0/1:42,14:27:56:0.250:2	0/1:59,16:28:75:0.213:2	0/1:41,24:28:65:0.369:2	0/1:54,28:29:82:0.341:2	0/1:64,27:31:91:0.297:2	0/1:50,24:29:74:0.324:2	0/1:40,22:29:62:0.355:2
chr1	1650797	rs1059830	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,17:28:66:0.258:2	0/1:35,5:27:40:0.125:2	./.	0/1:50,15:29:65:0.231:2	0/1:41,13:28:54:0.241:2	0/1:59,15:30:74:0.203:2	0/1:46,14:31:60:0.233:2	0/1:57,21:30:78:0.269:2	0/1:63,28:27:91:0.308:2	0/1:54,18:29:73:0.250:2	0/1:41,28:28:69:0.406:2
chr1	1650801	rs1137004	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,21:32:70:0.300:2	0/1:34,6:34:40:0.150:2	./.	0/1:52,14:33:66:0.212:2	0/1:37,11:32:48:0.229:2	0/1:62,13:33:75:0.173:2	0/1:45,12:32:57:0.211:2	0/1:60,21:32:81:0.259:2	0/1:59,29:33:88:0.330:2	0/1:58,20:32:78:0.256:2	0/1:44,29:32:73:0.397:2
chr1	1650807	rs1137005	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,50:32:77:0.649:2	0/1:7,34:32:41:0.829:2	0/1:0,10:34:10:1.00:2	0/1:22,50:33:74:0.694:2	0/1:40,14:31:54:0.259:2	0/1:36,40:33:76:0.526:2	0/1:17,36:33:53:0.679:2	0/1:30,57:33:87:0.655:2	0/1:34,58:34:93:0.630:2	0/1:23,52:33:75:0.693:2	0/1:39,40:33:79:0.506:2
chr1	1650832	rs72909030	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,28:33:94:0.298:2	0/1:46,6:33:52:0.115:2	0/1:8,3:32:11:0.273:2	0/1:64,34:33:98:0.347:2	0/1:48,22:31:70:0.314:2	0/1:68,24:31:92:0.261:2	0/1:47,25:33:72:0.347:2	0/1:71,43:32:114:0.377:2	0/1:62,43:33:105:0.410:2	0/1:72,30:31:102:0.294:2	0/1:50,56:31:106:0.528:2
chr1	1650845	rs1059831	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,58:32:106:0.547:2	0/1:13,52:32:65:0.800:2	0/1:5,11:31:16:0.688:2	0/1:49,63:32:112:0.563:2	0/1:53,27:32:80:0.338:2	0/1:69,39:31:109:0.361:2	0/1:31,46:32:77:0.597:2	0/1:61,69:32:130:0.531:2	0/1:58,61:32:119:0.513:2	0/1:44,73:32:117:0.624:2	0/1:76,48:32:124:0.387:2
chr1	1654007	rs199558549	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,21:33:31:0.677:2	0/1:2,13:33:15:0.867:2	0/1:0,3:31:3:1.00:2	0/1:2,17:32:19:0.895:2	0/1:158,4:32:162:0.025:2	./.	0/1:12,16:32:28:0.571:2	0/1:11,16:32:27:0.593:2	0/1:5,14:32:19:0.737:2	0/1:10,6:33:16:0.375:2	0/1:5,18:31:23:0.783:2
chr1	1654013	rs74045997	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:4,2:36:6:0.333:2	0/1:0,2:34:2:1.00:2	./.	0/1:0,3:36:3:1.00:2	./.	./.	0/1:7,5:32:12:0.417:2	0/1:3,6:31:9:0.667:2	./.	0/1:4,5:33:9:0.556:2	0/1:1,4:36:5:0.800:2
chr1	1654038	rs61777494	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,17:31:33:0.515:2	0/1:6,15:31:21:0.714:2	./.	0/1:15,13:29:28:0.464:2	0/1:148,5:30:154:0.033:2	0/1:169,14:30:183:0.077:2	0/1:20,12:30:32:0.375:2	0/1:27,16:30:43:0.372:2	0/1:20,5:31:25:0.200:2	0/1:19,19:29:38:0.500:2	0/1:19,12:30:31:0.387:2
chr1	1654058	rs61777495	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,38:31:56:0.679:2	0/1:6,26:31:32:0.813:2	0/1:1,2:32:3:0.667:2	0/1:16,23:30:39:0.590:2	0/1:137,11:30:149:0.074:2	0/1:158,24:30:182:0.132:2	0/1:20,23:31:43:0.535:2	0/1:28,31:31:59:0.525:2	0/1:18,17:32:35:0.486:2	0/1:18,31:30:49:0.633:2	0/1:19,22:31:41:0.537:2
chr1	1654064	rs200615789	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,38:29:56:0.679:2	0/1:6,26:30:32:0.813:2	./.	0/1:18,24:29:42:0.571:2	0/1:139,11:29:150:0.073:2	0/1:156,24:29:180:0.133:2	0/1:20,23:29:43:0.535:2	0/1:27,31:29:58:0.534:2	0/1:19,17:30:36:0.472:2	0/1:19,32:29:51:0.627:2	0/1:20,22:30:42:0.524:2
chr1	1663900	rs138133260	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,45:31:98:0.459:2	./.	./.	./.	./.
chr1	1663938	rs143259268	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,48:31:111:0.432:2	./.
chr1	1663960	rs147265331	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,63:30:176:0.358:2	./.	./.	./.	./.	./.
chr1	1666175	rs61777509	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,21:31:35:0.600:2	./.	0/1:154,41:31:195:0.210:2	0/1:156,31:32:187:0.166:2	0/1:133,61:32:194:0.314:2	0/1:146,51:31:197:0.259:2	0/1:131,60:33:191:0.314:2	0/1:127,60:31:187:0.321:2	./.
chr1	1666251	rs77655487	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:98,39:30:138:0.285:2	0/1:57,38:31:96:0.400:2	0/1:25,4:32:29:0.138:2	0/1:122,30:30:155:0.197:2	0/1:177,9:30:186:0.048:2	0/1:167,23:29:190:0.121:2	0/1:127,22:31:149:0.148:2	0/1:107,57:31:164:0.348:2	0/1:117,32:30:149:0.215:2	0/1:101,53:31:154:0.344:2	0/1:49,52:30:101:0.515:2
chr1	1669839	rs372880108	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,35:32:188:0.186:2	./.
chr1	1670432	.	T	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:186,4:32:190:0.021:2	0/1:189,6:32:195:0.031:2	./.	0/1:175,17:32:192:0.089:2	./.	0/1:189,6:31:195:0.031:2	0/1:193,5:32:198:0.025:2	0/1:184,9:33:193:0.047:2	./.	./.	./.
chr1	1670731	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:60,11:32:71:0.155:2	0/1:35,12:32:47:0.255:2	./.	./.	./.	./.	./.	./.	./.	0/1:55,13:33:68:0.191:2	./.
chr1	1670958	rs146637450	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,24:31:61:0.393:2	0/1:24,19:31:43:0.442:2	0/1:3,4:31:7:0.571:2	0/1:61,21:31:82:0.256:2	0/1:57,21:30:78:0.269:2	0/1:68,33:30:101:0.327:2	0/1:17,57:31:74:0.770:2	0/1:51,42:30:93:0.452:2	0/1:53,29:30:82:0.354:2	0/1:28,24:31:52:0.462:2	0/1:22,32:31:54:0.593:2
chr1	1684472	rs7407	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,79:30:83:0.963:2	0/1:4,69:31:73:0.945:2	0/1:0,12:30:12:1.00:2	0/1:85,57:30:142:0.401:2	./.	./.	0/1:75,73:31:148:0.493:2	0/1:1,132:30:134:0.992:2	0/1:78,59:31:137:0.431:2	0/1:0,103:29:103:1.00:2	0/1:1,133:30:135:0.993:2
chr1	1686040	rs4751	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,44:32:99:0.444:2	0/1:78,53:31:131:0.405:2	0/1:70,50:32:120:0.417:2	0/1:73,70:32:143:0.490:2	./.	0/1:61,52:33:113:0.460:2	./.	./.
chr1	1686081	rs75816936	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,10:31:13:0.769:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	1737895	rs77354509	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:32,20:33:52:0.385:2	0/1:15,8:33:23:0.348:2	./.	./.	./.	./.	0/1:28,10:33:38:0.263:2	./.	./.	0/1:27,15:32:42:0.357:2	./.
chr1	1737900	rs17363334	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:35,20:32:55:0.364:2	0/1:15,9:33:24:0.375:2	0/1:2,2:33:4:0.500:2	./.	./.	./.	0/1:29,13:31:42:0.310:2	./.	./.	0/1:27,15:30:42:0.357:2	./.
chr1	1846765	rs2247560	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,38:33:39:0.974:2	0/1:1,18:33:19:0.947:2	0/1:0,7:32:7:1.00:2	0/1:22,41:32:63:0.651:2	./.	0/1:10,34:32:44:0.773:2	0/1:20,34:33:54:0.630:2	0/1:0,58:32:58:1.00:2	0/1:14,23:32:37:0.622:2	0/1:0,38:33:38:1.00:2	0/1:0,54:32:54:1.00:2
chr1	1847123	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:121,4:32:125:0.032:2	./.	./.	./.	./.	./.	./.
chr1	1849529	rs28640257	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,82:30:85:0.965:2	0/1:0,45:30:45:1.00:2	0/1:0,15:30:15:1.00:2	0/1:72,54:30:126:0.429:2	./.	0/1:56,71:30:127:0.559:2	0/1:64,55:30:119:0.462:2	0/1:2,109:30:111:0.982:2	0/1:59,65:32:124:0.524:2	0/1:1,103:30:104:0.990:2	0/1:1,121:29:122:0.992:2
chr1	1849923	rs72634869	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,93:30:179:0.520:2	./.	./.	./.	0/1:123,71:30:194:0.366:2	./.	./.	0/1:76,77:30:153:0.503:2
chr1	1854109	rs2803348	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:33:34:1.00:2	0/1:0,22:33:22:1.00:2	0/1:0,2:30:2:1.00:2	0/1:25,38:33:63:0.603:2	./.	0/1:47,33:32:80:0.413:2	0/1:18,40:33:58:0.690:2	0/1:3,52:33:55:0.945:2	0/1:26,34:34:60:0.567:2	0/1:0,45:33:45:1.00:2	0/1:0,55:32:55:1.00:2
chr1	1859131	rs4648734	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,52:31:88:0.591:2	./.	./.	0/1:59,35:30:94:0.372:2	./.	0/1:34,34:31:68:0.500:2	./.	./.
chr1	1887019	rs28548017	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,8:32:19:0.421:2	0/1:10,3:31:13:0.231:2	0/1:0,2:32:2:1.00:2	0/1:0,16:33:16:1.00:2	./.	0/1:16,13:33:29:0.448:2	0/1:0,5:32:5:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,16:34:16:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,32:32:32:1.00:2
chr1	1887245	rs28575980	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,13:32:45:0.289:2	./.	./.	0/1:20,24:31:44:0.545:2	./.	0/1:19,18:33:37:0.486:2	./.	./.
chr1	1888193	rs3820011	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,64:32:136:0.471:2	./.	./.	0/1:58,68:33:126:0.540:2	./.	0/1:73,41:33:114:0.360:2	./.	./.
chr1	1891477	rs2748972	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,34:33:93:0.366:2	./.	./.	./.	./.	./.	./.
chr1	1896440	rs16824585	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:32:9:0.444:2	./.	./.	0/1:32,40:30:72:0.556:2	0/1:37,29:32:66:0.439:2	0/1:112,4:34:116:0.034:2	0/1:43,33:32:76:0.434:2	0/1:28,25:32:53:0.472:2	./.
chr1	1900186	rs35269416	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:82,73:32:155:0.471:2	0/1:39,50:32:89:0.562:2	./.	0/1:70,100:32:170:0.588:2	0/1:88,31:30:119:0.261:2	./.	./.	0/1:87,91:31:178:0.511:2	./.	./.	0/1:88,82:32:170:0.482:2
chr1	1900232	rs16824588	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,62:29:125:0.496:2	0/1:31,32:28:63:0.508:2	0/1:4,13:29:17:0.765:2	0/1:61,69:28:130:0.531:2	0/1:65,24:29:89:0.270:2	0/1:107,54:28:161:0.335:2	0/1:66,51:29:117:0.436:2	0/1:68,76:29:144:0.528:2	0/1:99,63:29:162:0.389:2	0/1:77,48:29:125:0.384:2	0/1:79,57:28:136:0.419:2
chr1	1902129	rs200056196	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,76:31:156:0.487:2	./.	./.	./.	./.	./.	./.
chr1	1916890	rs3795280	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,86:29:162:0.531:2	0/1:50,53:29:103:0.515:2	0/1:60,55:30:115:0.478:2	./.	0/1:44,58:30:102:0.569:2	./.	./.
chr1	1957037	rs2229110	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,155:30:157:0.994:2	0/1:1,109:31:110:0.991:2	0/1:18,16:33:34:0.471:2	0/1:1,164:32:166:0.994:2	0/1:0,170:32:170:1.00:2	0/1:1,180:33:181:0.994:2	0/1:100,78:32:178:0.438:2	0/1:0,165:32:165:1.00:2	0/1:2,171:33:174:0.988:2	0/1:94,84:33:178:0.472:2	0/1:86,78:31:164:0.476:2
chr1	1960674	rs28408173	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,57:30:100:0.570:2	./.	./.	0/1:30,28:31:58:0.483:2	0/1:31,46:30:77:0.597:2
chr1	1987993	rs12184	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:54,33:28:87:0.379:2	0/1:27,22:28:49:0.449:2	0/1:8,14:29:22:0.636:2	./.	0/1:1,135:29:136:0.993:2	0/1:82,74:29:156:0.474:2	./.	0/1:92,52:29:144:0.361:2	0/1:76,53:29:129:0.411:2	./.	0/1:68,44:28:112:0.393:2
chr1	1991014	rs1878745	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,29:29:81:0.358:2	0/1:45,28:29:73:0.384:2	./.	./.	./.	0/1:78,67:29:145:0.462:2	./.	0/1:122,75:29:197:0.381:2	./.	./.	0/1:83,64:28:147:0.435:2
chr1	2005740	rs2459986	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,11:25:11:1.00:2	0/1:0,12:28:12:1.00:2	./.	0/1:20,13:28:33:0.394:2	0/1:0,28:26:28:1.00:2	0/1:0,19:27:19:1.00:2	0/1:13,8:29:21:0.381:2	0/1:0,23:26:23:1.00:2	0/1:0,39:29:39:1.00:2	0/1:15,9:29:24:0.375:2	0/1:0,17:26:17:1.00:2
chr1	2125172	rs1058411	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.
chr1	2160661	rs149898447	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,82:31:160:0.513:2	./.	./.	./.	./.
chr1	2290143	rs34587196	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,63:32:102:0.618:2	./.	./.	./.	./.	./.	./.
chr1	2316421	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.
chr1	2337194	rs3795270	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,11:33:15:0.733:2	./.
chr1	2337277	rs11586985	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,7:30:16:0.438:2
chr1	2340198	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.	./.	./.
chr1	2340200	rs2494598	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,49:30:50:0.980:2	0/1:0,35:30:35:1.00:2	0/1:3,6:26:9:0.667:2	0/1:1,73:30:74:0.986:2	0/1:1,112:30:113:0.991:2	0/1:0,89:29:89:1.00:2	0/1:1,105:30:106:0.991:2	0/1:0,87:31:88:1.00:2	0/1:0,46:32:46:1.00:2	0/1:27,18:27:45:0.400:2	0/1:28,15:31:43:0.349:2
chr1	2340212	rs1143016	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,84:31:135:0.622:2	./.	./.	./.	./.
chr1	2418384	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:110,4:30:114:0.035:2	./.	./.	./.	./.	./.	./.
chr1	2418625	rs7512269	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:14,12:31:26:0.462:2	0/1:5,6:31:11:0.545:2	./.	./.	./.	./.	./.	0/1:27,28:29:55:0.509:2	./.	./.	./.
chr1	2418764	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,44:33:95:0.463:2	./.	./.
chr1	2426313	rs79885852	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,20:31:54:0.370:2	./.	./.	./.	./.
chr1	2429006	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:182,4:33:186:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr1	2430617	rs2296442	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,105:32:106:0.991:2	0/1:0,63:32:63:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,134:32:134:1.00:2	./.	0/1:85,65:31:150:0.433:2	0/1:0,143:32:143:1.00:2	0/1:2,136:32:138:0.986:2	0/1:82,61:33:143:0.427:2	./.	0/1:1,109:31:110:0.991:2
chr1	2433894	rs55874156	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.
chr1	2433900	rs12736998	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,8:32:8:1.00:2	0/1:0,3:30:3:1.00:2	./.	0/1:0,5:33:5:1.00:2	./.	0/1:2,4:32:6:0.667:2	0/1:0,2:32:2:1.00:2	0/1:0,3:32:3:1.00:2	./.	./.	0/1:0,4:33:4:1.00:2
chr1	2434171	rs181061314	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,6:31:12:0.500:2	0/1:3,8:30:12:0.727:2	./.	./.	./.	./.	./.
chr1	2435738	rs114371513	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,8:31:18:0.444:2	./.	./.	./.	./.	./.	./.	./.
chr1	2436256	rs138038983	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,15:30:25:0.600:2	./.	./.
chr1	2436303	rs79405490	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:30:12:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr1	2436391	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	2441358	rs2494620	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,36:30:91:0.396:2	0/1:39,19:30:58:0.328:2	./.
chr1	2441573	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,5:32:155:0.032:2	./.	./.	./.	./.	./.
chr1	2444414	rs7535528	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,39:32:51:0.765:2	0/1:9,24:32:33:0.727:2	0/1:0,15:31:15:1.00:2	0/1:19,23:30:42:0.548:2	./.	0/1:17,19:30:36:0.528:2	0/1:0,33:31:33:1.00:2	0/1:26,47:30:73:0.644:2	0/1:16,28:32:44:0.636:2	./.	0/1:8,15:31:23:0.652:2
chr1	2445877	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:31:54:0.074:2
chr1	2452569	rs2985862	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:32:63:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,100:32:100:1.00:2	./.	0/1:37,54:32:91:0.593:2	0/1:1,80:32:81:0.988:2	0/1:1,127:32:128:0.992:2	0/1:0,75:34:75:1.00:2	0/1:41,43:33:84:0.512:2	0/1:1,88:32:89:0.989:2
chr1	2488112	rs11573967	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,9:31:32:0.281:2	./.	./.	./.	./.	./.	./.
chr1	2488153	rs4870	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,22:33:56:0.393:2	0/1:0,34:31:34:1.00:2	0/1:0,50:31:50:1.00:2	./.	./.	0/1:31,18:34:49:0.367:2	0/1:34,24:31:58:0.414:2	0/1:22,26:33:48:0.542:2
chr1	2489200	rs2234158	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,63:32:138:0.457:2	./.	./.	./.	./.
chr1	2491305	rs2234162	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,64:30:90:0.711:2	./.	./.	./.	./.
chr1	2494330	rs2234167	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,25:29:61:0.410:2	0/1:0,71:30:71:1.00:2	0/1:0,52:30:52:1.00:2	./.	./.	./.	./.	0/1:12,21:31:33:0.636:2
chr1	2494663	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,4:31:88:0.045:2	./.	./.	./.	./.	./.	./.	./.
chr1	2526746	rs3748816	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,48:29:102:0.471:2	./.	0/1:42,38:28:80:0.475:2	0/1:40,40:28:80:0.500:2	./.
chr1	2535613	rs4648562	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,38:30:82:0.469:2	0/1:0,63:31:63:1.00:2	./.
chr1	2535648	rs199706451	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,89:32:191:0.466:2	./.	./.	./.
chr1	2541269	rs10797440	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:145,4:31:149:0.027:2	./.	0/1:95,53:29:148:0.358:2	./.	0/1:53,54:31:107:0.505:2	0/1:0,86:30:86:1.00:2	./.
chr1	2560882	rs4648658	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,16:31:16:1.00:2	0/1:0,12:32:12:1.00:2	./.	0/1:0,20:32:20:1.00:2	0/1:0,5:30:5:1.00:2	0/1:1,20:32:21:0.952:2	0/1:7,3:33:10:0.300:2	0/1:0,41:31:41:1.00:2	0/1:15,11:32:26:0.423:2	./.	0/1:0,7:30:7:1.00:2
chr1	2560903	rs4648659	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,15:30:15:1.00:2	0/1:0,11:29:11:1.00:2	./.	0/1:0,21:29:21:1.00:2	0/1:0,4:28:4:1.00:2	0/1:1,23:28:24:0.958:2	0/1:2,8:29:10:0.800:2	0/1:0,42:28:42:1.00:2	0/1:18,12:30:30:0.400:2	./.	0/1:0,7:31:7:1.00:2
chr1	2704112	rs56328393	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,18:29:49:0.367:2	./.	./.	./.	./.
chr1	2704247	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,5:27:100:0.050:2	./.
chr1	2938265	rs4576609	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,17:29:28:0.607:2	./.	./.	0/1:13,9:31:22:0.409:2	0/1:18,18:31:36:0.500:2	0/1:18,10:31:28:0.357:2	./.	0/1:23,23:32:46:0.500:2
chr1	2938697	rs3795262	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,10:29:17:0.588:2	0/1:71,59:29:130:0.454:2	./.	./.	0/1:66,44:29:110:0.400:2	0/1:106,46:28:152:0.303:2	0/1:61,44:31:105:0.419:2	./.	0/1:0,69:30:69:1.00:2
chr1	2938989	rs3795263	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:22,22:32:44:0.500:2	0/1:5,18:31:23:0.783:2	0/1:5,4:31:9:0.444:2	./.	0/1:0,35:31:35:1.00:2	0/1:25,29:32:54:0.537:2	0/1:19,22:31:41:0.537:2	./.	0/1:20,17:33:37:0.459:2	0/1:0,30:33:30:1.00:2	./.
chr1	2939138	rs35852409	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,9:29:26:0.346:2
chr1	2985812	rs200480152	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,6:19:45:0.133:2
chr1	2985885	rs7413494	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:32:6:0.500:2	./.	./.	./.	./.	./.
chr1	3301721	rs2282198	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,53:32:97:0.546:2	./.	0/1:60,51:32:111:0.459:2	./.	./.	0/1:46,40:34:86:0.465:2	./.	0/1:37,32:33:70:0.464:2
chr1	3322181	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,4:30:46:0.087:2	./.	./.	./.	./.	./.	./.
chr1	3327964	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2	./.	./.
chr1	3328358	rs870124	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,12:32:12:1.00:2	0/1:0,6:31:6:1.00:2	./.	0/1:0,6:31:6:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,5:31:5:1.00:2	0/1:3,2:34:5:0.400:2	0/1:8,5:31:13:0.385:2	0/1:0,8:33:8:1.00:2	./.	0/1:0,7:31:7:1.00:2
chr1	3328659	rs2493292	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,25:32:26:0.962:2	0/1:0,8:30:8:1.00:2	./.	./.	0/1:14,26:30:40:0.650:2	./.	./.	./.	0/1:19,28:31:47:0.596:2	./.	./.
chr1	3329360	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	3380057	rs3806164	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,53:31:96:0.552:2	./.	./.	./.	./.	./.	./.	./.
chr1	3383881	rs371036704	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,8:30:12:0.667:2
chr1	3383898	rs6424078	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,8:31:8:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,14:31:15:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,10:31:10:1.00:2
chr1	3385487	rs193254384	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:33:115:0.035:2	./.
chr1	3388269	rs77768688	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:32:13:0.462:2	./.	0/1:23,27:31:50:0.540:2	./.	0/1:29,28:32:57:0.491:2	./.	./.	./.	./.
chr1	3389727	rs2185639	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,95:29:96:0.990:2	0/1:0,44:30:45:1.00:2	0/1:15,9:27:24:0.375:2	0/1:86,70:28:157:0.449:2	0/1:3,142:28:145:0.979:2	0/1:0,148:29:148:1.00:2	0/1:0,164:28:165:1.00:2	0/1:2,172:29:174:0.989:2	0/1:3,135:29:138:0.978:2	0/1:0,92:29:92:1.00:2	0/1:58,42:29:100:0.420:2
chr1	3394441	rs17854723	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,19:31:40:0.475:2
chr1	3394456	rs4638054	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:30:48:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,54:31:55:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,67:30:67:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,63:31:63:1.00:2
chr1	3395039	rs10797395	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,173:31:174:0.994:2	0/1:1,149:31:150:0.993:2	0/1:29,28:29:57:0.491:2	0/1:85,104:33:189:0.550:2	0/1:1,191:31:192:0.995:2	0/1:1,195:31:196:0.995:2	0/1:5,185:31:190:0.974:2	0/1:0,193:31:193:1.00:2	0/1:0,160:33:160:1.00:2	0/1:0,179:31:179:1.00:2	0/1:82,93:31:176:0.531:2
chr1	3397062	rs56309807	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	3407101	rs12404355	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,30:30:104:0.288:2	./.	./.	./.	./.	./.
chr1	3410410	rs61910697	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,38:31:108:0.352:2	./.	./.	./.	./.	./.	./.	./.
chr1	3410973	rs12075570	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,7:31:9:0.778:2	./.	./.	./.	./.	./.	./.	./.
chr1	3413868	rs4648506	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.
chr1	3416449	rs7553399	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,8:31:8:1.00:2	0/1:0,7:31:7:1.00:2	./.	0/1:4,6:32:10:0.600:2	0/1:0,8:30:8:1.00:2	0/1:0,8:30:8:1.00:2	0/1:5,5:33:10:0.500:2	0/1:0,10:31:10:1.00:2	0/1:0,16:33:16:1.00:2	0/1:4,9:33:13:0.692:2	0/1:5,3:34:8:0.375:2
chr1	3417211	rs61742846	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,19:31:27:0.704:2	./.	./.	./.	./.	./.	./.	./.
chr1	3418391	rs4648508	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:3,60:30:63:0.952:2	0/1:0,43:30:43:1.00:2	./.	./.	0/1:0,59:30:59:1.00:2	./.	./.	0/1:31,46:30:77:0.597:2	0/1:18,40:31:58:0.690:2	0/1:22,24:31:46:0.522:2	0/1:7,33:29:40:0.825:2
chr1	3421897	rs2821008	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,17:31:39:0.436:2	0/1:2,8:30:10:0.800:2	./.	./.	./.	0/1:14,16:30:30:0.533:2	./.	./.	0/1:14,4:27:18:0.222:2	./.	./.
chr1	3422057	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,3:31:25:0.120:2	./.	./.	./.	./.	./.
chr1	3424388	rs947345	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,7:32:16:0.438:2	0/1:53,36:32:89:0.404:2	./.	./.	./.	./.	./.	./.	./.
chr1	3425183	rs61735125	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,70:31:127:0.551:2	0/1:42,33:31:75:0.440:2	./.	./.	./.	./.	./.	./.	0/1:103,87:31:190:0.458:2	./.	./.
chr1	3427351	rs2821000	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,11:29:31:0.355:2	./.	./.	./.	./.	./.
chr1	3428160	rs2820999	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,14:32:56:0.250:2	0/1:16,16:31:32:0.500:2	0/1:2,6:33:8:0.750:2	0/1:63,41:31:104:0.394:2	./.	0/1:59,33:31:92:0.359:2	0/1:53,25:31:78:0.321:2	0/1:46,31:33:77:0.403:2	0/1:30,36:33:66:0.545:2	0/1:27,26:32:53:0.491:2	./.
chr1	3428608	rs11585362	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,15:31:27:0.556:2	0/1:77,66:31:143:0.462:2	./.	./.	0/1:64,66:30:130:0.508:2	0/1:68,84:32:152:0.553:2	./.	0/1:57,74:32:131:0.565:2	./.
chr1	3447666	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	3447689	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	3496479	rs2794340	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,121:28:121:1.00:2	0/1:0,58:29:58:1.00:2	0/1:0,27:30:27:1.00:2	0/1:116,58:28:174:0.333:2	0/1:3,136:29:139:0.978:2	0/1:0,179:30:179:1.00:2	0/1:2,183:30:185:0.989:2	0/1:0,175:29:176:1.00:2	0/1:1,180:30:181:0.994:2	0/1:117,59:29:176:0.335:2	0/1:0,111:29:111:1.00:2
chr1	3511934	rs7513275	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,11:26:22:0.500:2	./.	0/1:16,22:27:38:0.579:2	0/1:17,9:24:26:0.346:2	./.	./.	0/1:6,10:24:16:0.625:2	0/1:17,11:26:28:0.393:2
chr1	3544187	rs113982697	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,40:31:66:0.606:2	./.	./.	./.	./.	./.
chr1	3548136	rs2760321	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,10:29:10:1.00:2	0/1:0,6:29:6:1.00:2	./.	0/1:5,4:29:9:0.444:2	0/1:0,9:26:9:1.00:2	0/1:0,5:28:5:1.00:2	0/1:10,3:28:13:0.231:2	0/1:0,6:28:6:1.00:2	0/1:0,4:28:4:1.00:2	./.	0/1:0,3:30:3:1.00:2
chr1	3607520	rs3765730	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:25,12:30:37:0.324:2	0/1:9,9:31:18:0.500:2	0/1:11,7:30:18:0.389:2	./.	./.	./.	0/1:25,29:31:54:0.537:2	0/1:20,25:31:45:0.556:2	./.	0/1:23,20:30:43:0.465:2	./.
chr1	3607532	rs12122732	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,17:33:34:0.500:2	0/1:8,9:33:17:0.529:2	./.	./.	./.	0/1:22,23:32:45:0.511:2	./.	./.	0/1:1,41:33:42:0.976:2	./.	0/1:14,12:33:26:0.462:2
chr1	3638674	rs1801174	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,142:32:142:1.00:2	0/1:0,65:32:65:1.00:2	0/1:2,18:32:20:0.900:2	0/1:70,88:32:158:0.557:2	0/1:0,120:31:120:1.00:2	0/1:0,127:31:127:1.00:2	0/1:75,67:32:142:0.472:2	0/1:1,144:32:145:0.993:2	0/1:0,133:32:133:1.00:2	0/1:1,144:32:145:0.993:2	0/1:60,64:32:124:0.516:2
chr1	3669172	rs41315312	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:46,27:32:73:0.370:2	0/1:29,16:32:45:0.356:2	./.	./.	./.	./.	./.	0/1:103,67:31:170:0.394:2	./.	0/1:70,34:32:104:0.327:2	./.
chr1	3669201	rs10797410	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:47,27:29:74:0.365:2	0/1:35,21:28:56:0.375:2	./.	./.	0/1:109,67:30:176:0.381:2	0/1:0,97:30:97:1.00:2	./.	0/1:109,56:29:166:0.339:2	0/1:1,114:30:115:0.991:2	0/1:66,32:30:99:0.327:2	0/1:57,42:30:99:0.424:2
chr1	3669205	rs10910021	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:46,24:34:70:0.343:2	0/1:34,19:32:53:0.358:2	./.	./.	0/1:107,60:33:168:0.359:2	0/1:0,89:32:89:1.00:2	./.	0/1:111,52:32:163:0.319:2	0/1:1,107:33:108:0.991:2	0/1:67,30:32:97:0.309:2	0/1:49,42:32:91:0.462:2
chr1	3677933	rs1181883	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:70,60:28:130:0.462:2	0/1:38,44:28:82:0.537:2	./.	./.	0/1:82,98:28:180:0.544:2	0/1:2,154:28:156:0.987:2	0/1:89,103:28:192:0.536:2	0/1:98,96:28:194:0.495:2	0/1:0,173:29:173:1.00:2	0/1:78,73:28:151:0.483:2	0/1:76,107:28:184:0.585:2
chr1	3679775	rs10910024	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,29:30:58:0.509:2	0/1:0,36:30:36:1.00:2	./.	./.	0/1:2,45:31:47:0.957:2	./.	0/1:21,9:30:30:0.300:2
chr1	3688030	rs3737592	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,9:31:13:0.692:2	./.	./.	./.	./.	./.
chr1	3700618	rs74764187	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,37:31:60:0.617:2	./.	./.	./.	./.	./.
chr1	3701663	rs2298227	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,46:32:47:0.979:2	./.	./.	./.	./.	./.
chr1	3712513	rs148481344	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,19:33:34:0.559:2	./.	./.	./.	./.	./.
chr1	3731965	rs12728401	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,17:31:37:0.459:2	./.	./.	./.	./.	./.
chr1	3732862	rs185664269	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,23:31:48:0.479:2
chr1	3743319	rs6663840	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,6:31:11:0.545:2	0/1:54,65:31:119:0.546:2	./.	0/1:67,49:31:116:0.422:2	0/1:43,63:31:106:0.594:2	./.	./.	./.	./.
chr1	3745880	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	3745924	rs2275831	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,8:28:15:0.533:2	./.	./.	./.	./.
chr1	3746514	rs12144567	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	3753136	rs2275824	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:26,22:32:48:0.458:2	0/1:10,6:32:16:0.375:2	0/1:0,5:31:5:1.00:2	./.	0/1:46,41:31:87:0.471:2	./.	./.	0/1:37,23:31:60:0.383:2	0/1:13,33:32:46:0.717:2	0/1:0,43:31:43:1.00:2	0/1:0,64:31:64:1.00:2
chr1	3755675	rs1891941	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,75:33:76:0.987:2	0/1:0,38:32:38:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,92:33:92:1.00:2	0/1:1,94:32:95:0.989:2	0/1:0,91:33:91:1.00:2	0/1:83,57:33:140:0.407:2	0/1:0,112:33:112:1.00:2	0/1:0,112:34:112:1.00:2	0/1:0,113:33:113:1.00:2	0/1:0,110:33:110:1.00:2
chr1	3759760	rs115065436	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:30:9:0.667:2	./.	./.	./.	./.	./.	./.	./.	0/1:36,33:30:69:0.478:2
chr1	3759784	rs10797347	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,51:33:51:1.00:2	0/1:44,26:32:70:0.371:2	0/1:0,66:32:66:1.00:2	0/1:0,43:34:43:1.00:2	0/1:0,38:32:38:1.00:2	0/1:1,42:32:43:0.977:2
chr1	3761465	rs72848418	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,21:31:38:0.553:2	./.	./.	./.	./.	./.	./.	./.
chr1	3761479	rs2275822	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:14,6:30:20:0.300:2	0/1:12,9:32:21:0.429:2	0/1:5,5:29:10:0.500:2	./.	0/1:20,20:32:40:0.500:2	./.	./.	0/1:25,20:31:45:0.444:2	0/1:25,7:32:32:0.219:2	0/1:0,29:31:29:1.00:2	0/1:0,48:31:48:1.00:2
chr1	3786189	rs1141070	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:29,23:33:52:0.442:2	0/1:27,20:32:47:0.426:2	0/1:2,4:29:6:0.667:2	./.	./.	0/1:56,46:32:102:0.451:2	./.	./.	0/1:31,23:32:54:0.426:2	0/1:38,25:32:63:0.397:2	0/1:41,28:33:69:0.406:2
chr1	3786245	rs12738235	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,62:31:151:0.411:2	./.	./.	./.	./.	./.	./.	./.
chr1	3800242	rs3205087	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,57:30:57:1.00:2	0/1:0,24:29:24:1.00:2	./.	./.	0/1:36,50:29:86:0.581:2	0/1:48,50:29:98:0.510:2	0/1:40,44:30:84:0.524:2	0/1:58,37:29:95:0.389:2	0/1:47,50:30:97:0.515:2	0/1:42,40:30:82:0.488:2	0/1:35,44:30:79:0.557:2
chr1	3807388	rs4131373	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,37:30:78:0.474:2	./.	0/1:38,46:31:84:0.548:2	./.	0/1:37,35:32:72:0.486:2	./.
chr1	3807593	rs4274008	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:33:41:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,37:33:37:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,43:32:44:1.00:2	0/1:0,42:32:42:1.00:2
chr1	4771981	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,27:30:60:0.450:2	./.	./.	./.	./.	./.	./.
chr1	4772053	rs1061968	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,12:27:28:0.429:2	0/1:15,6:26:21:0.286:2	0/1:22,15:27:37:0.405:2	0/1:8,8:24:16:0.500:2	./.	./.	0/1:0,14:25:14:1.00:2	./.
chr1	4772717	rs242056	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,12:33:23:0.522:2	0/1:11,8:32:19:0.421:2	0/1:0,2:32:2:1.00:2	0/1:0,22:33:22:1.00:2	0/1:11,7:32:18:0.389:2	0/1:10,6:33:16:0.375:2	0/1:15,9:32:24:0.375:2	0/1:0,16:32:16:1.00:2	0/1:9,6:33:15:0.400:2	./.	0/1:7,15:32:22:0.682:2
chr1	5924518	rs115526767	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,76:30:155:0.490:2	./.	./.	./.	./.	./.	./.
chr1	5926507	rs555164	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:41,22:31:63:0.349:2	0/1:14,20:32:34:0.588:2	0/1:10,6:33:16:0.375:2	./.	0/1:0,62:33:62:1.00:2	./.	0/1:39,34:33:73:0.466:2	./.	0/1:2,83:33:85:0.976:2	0/1:31,40:32:71:0.563:2	0/1:61,36:32:98:0.371:2
chr1	5927169	rs113445782	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,12:32:37:0.324:2	./.	./.	./.	./.	./.	./.	./.
chr1	5927864	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:31:42:0.095:2
chr1	5937168	rs3747992	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,55:29:89:0.618:2	0/1:24,34:28:58:0.586:2	0/1:13,4:30:17:0.235:2	0/1:69,68:30:137:0.496:2	0/1:81,61:31:142:0.430:2	0/1:71,81:30:152:0.533:2	./.	0/1:73,83:31:156:0.532:2	./.	0/1:62,77:30:139:0.554:2	0/1:46,42:30:89:0.477:2
chr1	5937327	rs3747990	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,190:33:191:0.995:2	./.	./.
chr1	5940243	rs17472401	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,46:30:101:0.455:2
chr1	5947403	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:32:123:0.033:2	./.	./.	./.	./.	./.
chr1	5951028	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:34:85:0.047:2	./.	./.
chr1	5965381	rs12120967	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,189:32:189:1.00:2	./.	./.
chr1	5965455	rs571655	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:30:10:0.600:2	./.	./.	./.	0/1:48,42:32:90:0.467:2	./.	./.	./.	./.
chr1	5969240	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,4:31:59:0.068:2	./.	./.	./.	./.	./.	./.	./.
chr1	5987807	rs367909950	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,3:33:48:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr1	6142308	rs2227911	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,44:32:92:0.478:2	./.	./.	./.	./.	./.	./.	./.
chr1	6149053	rs2273043	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,20:31:43:0.465:2	./.	0/1:28,20:30:48:0.417:2	./.	./.	0/1:0,32:31:32:1.00:2	0/1:15,17:31:32:0.531:2	0/1:24,25:31:49:0.510:2
chr1	6149122	rs2273042	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,17:29:26:0.654:2	./.	0/1:17,6:30:24:0.261:2	./.	./.	0/1:0,14:27:14:1.00:2	0/1:9,6:31:15:0.400:2	0/1:13,16:30:29:0.552:2
chr1	6158562	rs2229002	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:99,91:29:190:0.479:2	0/1:69,42:30:111:0.378:2	./.	0/1:1,170:29:171:0.994:2	0/1:2,168:29:170:0.988:2	0/1:2,168:29:170:0.988:2	./.	./.	0/1:1,171:30:172:0.994:2	0/1:1,176:30:177:0.994:2	0/1:1,157:29:158:0.994:2
chr1	6162054	rs6696489	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:4,3:33:7:0.429:2	./.	0/1:0,8:32:8:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,10:32:10:1.00:2	./.	./.	0/1:0,6:33:6:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,2:28:2:1.00:2
chr1	6162132	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:32:61:0.066:2	./.	./.
chr1	6184092	rs2843493	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:58,48:31:106:0.453:2	0/1:35,34:32:69:0.493:2	./.	0/1:88,61:31:150:0.409:2	./.	0/1:65,52:33:119:0.444:2	0/1:0,65:31:65:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,113:32:113:1.00:2	0/1:62,43:31:105:0.410:2	0/1:0,85:30:85:1.00:2
chr1	6196869	rs2250358	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,72:30:72:1.00:2	0/1:2,61:30:63:0.968:2	./.	./.	./.
chr1	6203971	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,26:32:106:0.245:2	./.	./.	./.	./.	./.	./.	./.
chr1	6204161	rs17436816	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,80:31:178:0.449:2	0/1:3,142:32:145:0.979:2	./.	./.	./.
chr1	6209363	rs12565328	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,47:31:47:1.00:2	0/1:1,37:31:38:0.974:2	./.	0/1:31,44:31:75:0.587:2	./.	./.	./.	./.	./.	./.	0/1:30,31:31:61:0.508:2
chr1	6211183	rs9434711	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,72:31:74:0.986:2	0/1:1,62:32:63:0.984:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,34:32:85:0.400:2
chr1	6215736	rs12074369	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,24:30:36:0.667:2	0/1:11,8:29:19:0.421:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,15:29:52:0.288:2
chr1	6267531	rs12070387	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,55:27:93:0.591:2	./.	./.	./.	./.	./.	./.	./.
chr1	6269021	rs114798118	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr1	6269028	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.
chr1	6269340	rs4908865	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:30:11:0.727:2	./.	./.	./.	./.	./.	./.	./.
chr1	6271125	rs1052598	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,15:28:33:0.455:2	./.	./.	./.	./.	./.	./.	./.
chr1	6272078	rs12073329	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,23:30:53:0.434:2	./.	./.	./.	./.	./.	./.	./.
chr1	6272813	rs2294711	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,34:32:68:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr1	6278414	rs709209	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,76:33:78:0.974:2	./.	0/1:51,36:32:87:0.414:2	./.	./.	0/1:0,76:34:76:1.00:2	0/1:29,24:32:53:0.453:2	0/1:33,28:33:61:0.459:2
chr1	6279370	rs846111	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,48:33:89:0.545:2	./.	0/1:40,55:31:95:0.579:2	./.	./.	0/1:0,105:33:105:1.00:2	0/1:36,37:30:73:0.507:2	0/1:64,55:31:119:0.462:2
chr1	6313938	rs12735670	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,12:32:12:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,3:31:3:1.00:2	0/1:3,6:28:9:0.667:2	./.	./.	./.	0/1:0,5:30:5:1.00:2	./.	0/1:5,5:32:10:0.500:2	./.
chr1	6314201	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:32:159:0.025:2
chr1	6314822	rs11590458	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:29:79:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,14:31:14:1.00:2	0/1:60,51:28:111:0.459:2	./.	0/1:72,67:30:140:0.482:2	0/1:3,104:30:107:0.972:2	0/1:0,126:30:127:1.00:2	./.	0/1:51,44:28:95:0.463:2	0/1:48,38:28:87:0.442:2
chr1	6341216	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,7:28:17:0.412:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	6418868	rs199794065	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,68:31:148:0.459:2
chr1	6473294	rs7529205	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,32:31:56:0.571:2	./.	./.	0/1:23,19:32:42:0.452:2
chr1	6500712	rs367944375	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,5:28:7:0.714:2	./.	./.	./.	./.	./.
chr1	6501044	rs2311045	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,13:31:32:0.406:2	./.	./.	0/1:7,9:32:16:0.563:2
chr1	6505917	rs150033799	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:33:104:0.038:2	./.	./.	./.	./.
chr1	6511780	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,10:31:25:0.400:2	0/1:13,4:30:17:0.235:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	6517476	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:133,6:31:139:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr1	6524649	rs35137293	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:32:70:0.057:2	./.	./.
chr1	6524688	rs3170675	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,31:31:58:0.534:2	0/1:17,15:32:32:0.469:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	6528564	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:31:85:0.048:2	./.
chr1	6528589	rs3138150	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,61:31:106:0.581:2	./.	./.	./.	./.	./.
chr1	6529443	rs730600	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,4:32:89:0.045:2	./.	0/1:21,29:30:50:0.580:2	./.	./.	./.	./.	./.
chr1	6531589	rs74809741	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,14:30:20:0.700:2	./.	./.	./.	./.	./.
chr1	6533393	rs61741379	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,15:30:26:0.577:2	./.	./.	./.	./.	./.
chr1	6534580	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:33:120:0.033:2	./.
chr1	6556585	rs201669114	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,91:31:172:0.529:2	0/1:71,63:31:134:0.470:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	6614230	rs10864625	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:15,6:31:21:0.286:2	0/1:6,4:31:10:0.400:2	./.	./.	./.	./.	0/1:14,13:31:27:0.481:2	0/1:33,25:30:58:0.431:2	0/1:13,23:32:36:0.639:2	./.	./.
chr1	6614535	rs4908923	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	0/1:0,2:30:2:1.00:2	0/1:0,2:29:2:1.00:2	./.	./.	0/1:0,4:28:4:1.00:2	./.
chr1	6631045	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:33:189:0.021:2	./.	./.	./.	./.
chr1	6631106	rs41278020	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,65:31:185:0.351:2	./.	./.	./.
chr1	6635231	rs10864628	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:32:28:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,12:34:12:1.00:2	0/1:1,76:33:77:0.987:2	0/1:0,39:31:39:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,45:33:45:1.00:2	0/1:0,47:32:47:1.00:2
chr1	6635306	rs34160967	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,76:32:172:0.442:2	./.	./.	./.	./.	./.	./.
chr1	6640944	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:115,4:31:119:0.034:2	./.	./.	./.	./.	./.	./.
chr1	6649028	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,68:30:114:0.596:2	./.	./.	./.	./.
chr1	6649228	rs2229330	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,4:29:25:0.160:2	./.	./.	./.
chr1	6655545	rs376312819	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:170,4:32:175:0.023:2	./.	./.	./.	./.	./.	./.
chr1	6659505	rs2232460	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:30:6:0.667:2	0/1:34,36:31:70:0.514:2	./.	0/1:0,56:31:56:1.00:2	0/1:38,31:32:69:0.449:2	./.	0/1:23,27:32:50:0.540:2	0/1:26,29:33:55:0.527:2	./.
chr1	6662057	rs2232455	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,3:33:8:0.375:2
chr1	6685274	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.
chr1	6685275	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.	./.	./.
chr1	6685300	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:31:7:0.571:2	./.	./.	./.
chr1	6685352	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:33:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	6693097	rs3174820	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,20:31:36:0.556:2	./.	0/1:0,39:30:39:1.00:2	0/1:14,10:30:24:0.417:2	./.	0/1:51,34:31:85:0.400:2	0/1:29,13:30:42:0.310:2	./.
chr1	6704635	rs200458	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,19:29:36:0.543:2	0/1:15,12:28:27:0.444:2	0/1:1,5:28:6:0.833:2	0/1:0,51:29:51:1.00:2	0/1:21,21:31:42:0.500:2	0/1:0,50:31:50:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,48:29:48:1.00:2	0/1:30,25:31:55:0.455:2	0/1:1,50:30:51:0.980:2	0/1:0,44:30:44:1.00:2
chr1	6705874	rs200454	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,86:31:192:0.450:2	./.	0/1:104,82:31:186:0.441:2	./.	./.	./.	0/1:81,65:30:146:0.445:2
chr1	6705875	rs202049277	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:142,29:12:172:0.170:2	./.	./.	./.	0/1:167,22:13:189:0.116:2	./.	./.	./.
chr1	6711146	rs12145525	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:31:5:0.600:2	0/1:44,41:29:85:0.482:2	./.	0/1:0,93:30:93:1.00:2	0/1:53,38:29:91:0.418:2	./.	0/1:36,39:31:75:0.520:2	0/1:32,49:29:81:0.605:2	./.
chr1	6738508	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:31:77:0.052:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	6741001	rs201724546	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,4:30:98:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr1	6845564	rs192783463	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:30:13:0.462:2	./.	./.	./.	./.	./.	./.	./.
chr1	7723534	rs3737907	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,77:31:165:0.467:2	0/1:69,68:31:137:0.496:2	./.	./.	./.	./.	./.
chr1	7723579	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:31:112:0.036:2	./.	./.	./.	./.
chr1	7723588	rs3737906	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	7723957	rs12128526	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,33:32:33:1.00:2	0/1:1,26:32:27:0.963:2	0/1:0,6:32:6:1.00:2	./.	0/1:31,29:31:60:0.483:2	0/1:28,20:32:48:0.417:2	./.	0/1:27,36:32:63:0.571:2	./.	./.	./.
chr1	7724340	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,4:26:33:0.121:2	./.	./.
chr1	7797503	rs41278952	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,46:32:82:0.561:2	./.	./.	./.	0/1:45,30:33:75:0.400:2	0/1:55,35:33:90:0.389:2	./.	./.
chr1	7833485	rs11576572	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,90:30:191:0.471:2	0/1:98,62:31:161:0.388:2	0/1:25,20:29:46:0.444:2	0/1:117,79:29:197:0.403:2	0/1:134,63:29:197:0.320:2	0/1:101,94:29:195:0.482:2	0/1:124,74:30:198:0.374:2	0/1:115,81:29:197:0.413:2	0/1:132,63:30:196:0.323:2	./.	0/1:116,79:30:196:0.405:2
chr1	7837379	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,5:28:67:0.075:2
chr1	7858700	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,59:30:149:0.399:2	./.	./.	./.	./.
chr1	7870048	rs228669	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,139:29:139:1.00:2	0/1:0,86:28:86:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,180:29:180:1.00:2	0/1:1,192:30:193:0.995:2	0/1:0,186:30:186:1.00:2	0/1:0,186:31:186:1.00:2	0/1:1,193:30:194:0.995:2	0/1:2,188:30:190:0.989:2	0/1:0,156:30:156:1.00:2	0/1:0,131:30:131:1.00:2
chr1	7880683	rs10462020	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,32:32:56:0.571:2	0/1:16,17:32:33:0.515:2	./.	./.	0/1:64,52:31:116:0.448:2	0/1:59,41:32:100:0.410:2	0/1:59,37:31:96:0.385:2	0/1:49,58:32:107:0.542:2	0/1:36,45:32:81:0.556:2	./.	./.
chr1	7887248	rs2859387	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,9:33:17:0.529:2	./.	0/1:13,24:32:37:0.649:2	./.	./.	0/1:7,4:33:11:0.364:2	0/1:24,15:32:39:0.385:2
chr1	7887493	rs228696	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:31:77:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,92:31:92:1.00:2	0/1:0,58:30:58:1.00:2	0/1:2,79:30:81:0.975:2	0/1:0,59:29:59:1.00:2	0/1:3,65:30:68:0.956:2	0/1:0,70:31:70:1.00:2	0/1:0,66:29:67:1.00:2	0/1:1,100:30:101:0.990:2
chr1	7887579	rs228697	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,79:29:182:0.434:2	./.	./.	./.	./.	./.	0/1:95,93:29:188:0.495:2	./.
chr1	7887605	rs17031614	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:32:188:0.021:2	./.	./.	./.	./.
chr1	7887632	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:31:173:0.023:2	./.	./.
chr1	7889941	rs2640908	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,57:32:122:0.467:2	./.	0/1:87,75:33:162:0.463:2	./.	./.	0/1:75,52:33:127:0.409:2	0/1:45,53:33:98:0.541:2
chr1	7890024	rs201662971	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,7:32:89:0.079:2	./.	./.	./.	./.	./.	0/1:66,4:33:71:0.057:2
chr1	7890026	rs199947375	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,7:28:88:0.080:2	./.	./.	./.	./.	./.	0/1:67,4:34:71:0.056:2
chr1	7890053	rs1776342	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,6:32:101:0.060:2	0/1:73,10:32:83:0.120:2	0/1:124,5:32:129:0.039:2	0/1:63,13:29:76:0.171:2	0/1:141,16:31:158:0.102:2	0/1:116,10:32:126:0.079:2	0/1:41,7:29:48:0.146:2	0/1:49,3:33:52:0.058:2
chr1	7890055	rs11121034	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,6:32:101:0.059:2	0/1:75,10:32:85:0.118:2	0/1:123,5:33:128:0.039:2	0/1:66,13:30:79:0.165:2	0/1:148,16:31:164:0.098:2	0/1:121,10:32:131:0.076:2	0/1:44,7:30:51:0.137:2	./.
chr1	7890064	rs12023156	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,65:29:83:0.783:2	0/1:12,25:30:37:0.676:2	0/1:0,12:31:12:1.00:2	0/1:28,72:30:100:0.720:2	./.	0/1:26,90:29:116:0.776:2	./.	0/1:50,88:29:138:0.638:2	0/1:41,76:30:117:0.650:2	./.	0/1:21,33:30:54:0.611:2
chr1	7890117	rs2640909	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,25:29:76:0.329:2	0/1:18,25:28:43:0.581:2	./.	0/1:66,46:29:112:0.411:2	0/1:76,60:29:136:0.441:2	0/1:61,47:29:108:0.435:2	0/1:55,70:29:125:0.560:2	0/1:62,84:30:146:0.575:2	0/1:65,61:30:126:0.484:2	0/1:45,38:29:85:0.458:2	./.
chr1	7897133	rs10462021	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,24:30:47:0.511:2	0/1:19,14:28:33:0.424:2	./.	./.	0/1:26,20:29:46:0.435:2	0/1:19,35:28:55:0.648:2	0/1:38,31:28:69:0.449:2	0/1:30,26:29:56:0.464:2	0/1:27,15:27:42:0.357:2	./.	./.
chr1	7902773	rs144281505	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,51:32:102:0.500:2	0/1:49,25:33:74:0.338:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	7913029	rs34305100	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,73:32:183:0.399:2	0/1:101,93:34:194:0.479:2	./.	./.
chr1	7913430	rs228648	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,47:32:95:0.495:2	0/1:41,27:31:68:0.397:2	0/1:0,15:31:15:1.00:2	0/1:2,148:31:150:0.987:2	0/1:104,51:31:155:0.329:2	0/1:2,161:31:163:0.988:2	0/1:100,76:32:176:0.432:2	0/1:114,64:31:178:0.360:2	0/1:92,78:32:170:0.459:2	0/1:0,160:32:160:1.00:2	0/1:115,72:32:187:0.385:2
chr1	7913445	rs13306061	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,98:32:164:0.598:2	0/1:79,84:33:163:0.515:2	./.	./.
chr1	8025444	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:31:101:0.040:2	./.
chr1	8384514	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:30:58:0.069:2	./.	./.	./.
chr1	8390384	rs56125713	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,20:32:40:0.500:2	0/1:35,30:33:65:0.462:2	0/1:38,15:33:53:0.283:2	./.	0/1:34,21:32:55:0.382:2
chr1	8390888	rs2289731	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,26:32:26:1.00:2	0/1:0,9:32:9:1.00:2	./.	0/1:15,9:31:24:0.375:2	0/1:1,16:31:17:0.941:2	0/1:0,25:30:25:1.00:2	./.	./.	./.	0/1:0,27:31:27:1.00:2	./.
chr1	8395560	rs7535752	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,8:32:14:0.571:2	./.	0/1:6,6:32:12:0.500:2	0/1:10,6:32:16:0.375:2	0/1:9,17:33:26:0.654:2	./.	0/1:12,5:32:17:0.294:2
chr1	8418644	rs11121172	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:31:26:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,4:29:4:1.00:2	0/1:13,6:31:19:0.316:2	0/1:0,18:29:18:1.00:2	0/1:0,23:29:23:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,29:32:29:1.00:2	0/1:17,14:30:31:0.452:2	0/1:0,15:30:15:1.00:2	0/1:0,24:31:24:1.00:2
chr1	8418650	rs1058766	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:31:26:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,5:31:5:1.00:2	0/1:14,6:32:20:0.300:2	0/1:0,20:31:20:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,31:32:31:1.00:2	0/1:16,14:33:30:0.467:2	0/1:0,19:31:19:1.00:2	0/1:0,24:31:24:1.00:2
chr1	8420737	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:30:36:0.111:2	./.
chr1	8421092	rs2784735	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,5:30:5:1.00:2	./.	./.	./.	0/1:0,5:30:5:1.00:2	./.	0/1:0,4:31:4:1.00:2	./.	./.	./.
chr1	8421203	rs13596	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:30:5:1.00:2	0/1:0,5:30:5:1.00:2	./.	./.	0/1:0,2:31:2:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,3:29:3:1.00:2	0/1:0,10:29:10:1.00:2	./.	0/1:0,5:32:5:1.00:2	0/1:0,3:31:3:1.00:2
chr1	8425900	rs3753275	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:23,12:28:36:0.343:2	0/1:16,12:29:28:0.429:2	0/1:5,3:30:8:0.375:2	./.	0/1:51,32:30:83:0.386:2	./.	0/1:54,26:29:81:0.325:2	0/1:70,36:29:106:0.340:2	0/1:31,34:30:65:0.523:2	./.	0/1:22,28:29:51:0.560:2
chr1	8557520	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,5:30:172:0.029:2	./.	./.
chr1	8716048	rs376012328	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,5:30:191:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	8923330	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,4:30:66:0.061:2	./.	./.	./.	./.	./.	./.	./.
chr1	8928125	rs2071412	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,6:29:20:0.316:2	./.	./.	./.	0/1:69,72:30:141:0.511:2	0/1:79,68:30:149:0.463:2	./.	0/1:78,82:31:161:0.513:2	0/1:73,95:31:168:0.565:2
chr1	8928129	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:32:143:0.028:2	./.	./.	./.	./.	./.
chr1	9009406	rs2274327	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,45:31:46:0.978:2	0/1:0,20:31:20:1.00:2	./.	0/1:38,35:31:73:0.479:2	0/1:1,69:31:70:0.986:2	0/1:0,61:30:61:1.00:2	0/1:0,65:31:65:1.00:2	0/1:32,22:31:54:0.407:2	./.	0/1:2,50:31:52:0.962:2	0/1:1,74:30:75:0.987:2
chr1	9009444	rs2274328	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,59:33:59:1.00:2	0/1:0,28:32:28:1.00:2	./.	0/1:39,37:32:76:0.487:2	0/1:0,91:32:91:1.00:2	0/1:0,70:32:70:1.00:2	0/1:1,68:33:69:0.986:2	0/1:37,31:32:68:0.456:2	0/1:59,45:34:104:0.433:2	0/1:2,67:32:69:0.971:2	0/1:1,75:33:76:0.987:2
chr1	9009451	rs2274329	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,48:33:109:0.440:2	./.	./.
chr1	9009470	rs2274330	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,38:29:108:0.352:2	./.	./.
chr1	9017204	rs2274333	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,13:28:32:0.406:2	0/1:27,12:28:39:0.308:2	0/1:7,4:30:11:0.364:2	0/1:69,4:31:73:0.055:2	./.	./.	0/1:52,55:29:107:0.514:2	0/1:50,39:29:89:0.438:2	0/1:24,17:29:41:0.415:2	./.	./.
chr1	9030964	rs3737665	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:40,19:30:59:0.322:2	0/1:21,15:32:36:0.417:2	./.	./.	./.	./.	0/1:44,34:30:78:0.436:2	./.	./.	./.	./.
chr1	9074861	rs12402973	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,4:33:9:0.444:2	0/1:1,3:33:4:0.750:2	./.	./.	./.	./.	./.	./.	0/1:12,5:32:17:0.294:2	./.	./.
chr1	9099920	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:33:63:0.063:2	./.	./.	./.	./.	./.
chr1	9129620	rs5438	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,61:33:128:0.477:2	./.	./.	./.	./.
chr1	9165610	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,63:31:186:0.339:2	./.	./.	./.	./.	./.
chr1	9165669	rs12075362	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,94:31:190:0.495:2	./.	./.	./.	./.	./.	./.
chr1	9165685	rs72637739	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,13:30:24:0.542:2	0/1:85,96:31:181:0.530:2	./.	./.	0/1:81,95:32:176:0.540:2	./.	./.	./.	./.
chr1	9305164	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,9:15:77:0.117:2	./.	./.	./.	./.	./.
chr1	9305445	rs34603401	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,13:33:31:0.419:2	0/1:6,9:33:15:0.600:2	./.	./.	./.	0/1:15,22:31:37:0.595:2	./.	0/1:2,28:32:30:0.933:2	./.	0/1:12,7:33:19:0.368:2	0/1:12,20:32:32:0.625:2
chr1	9307033	rs7524046	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:28,25:30:53:0.472:2	0/1:15,14:32:29:0.483:2	0/1:8,3:31:11:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	9307138	rs11121350	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:47,19:28:66:0.288:2	0/1:20,26:28:46:0.565:2	0/1:11,9:30:20:0.450:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	9322155	rs149778702	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,44:31:87:0.506:2	0/1:27,32:31:59:0.542:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	9323759	rs377461550	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,10:32:15:0.667:2
chr1	9323910	rs6688832	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.	./.	./.	./.	0/1:0,31:32:31:1.00:2	0/1:13,12:32:25:0.480:2
chr1	9323916	rs148202091	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,20:31:45:0.444:2	./.	./.	./.	./.	./.	./.	./.
chr1	9324213	rs17368528	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,6:31:19:0.316:2	0/1:10,6:33:16:0.375:2	./.	./.	./.	0/1:18,24:32:42:0.571:2	./.	0/1:0,37:32:37:1.00:2	./.	./.	./.
chr1	9324571	rs9434742	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:40,30:28:70:0.429:2	0/1:21,15:27:36:0.417:2	./.	0/1:57,45:29:102:0.441:2	./.	0/1:67,40:28:107:0.374:2	0/1:61,40:29:101:0.396:2	0/1:3,75:28:78:0.962:2	./.	0/1:29,25:29:54:0.463:2	0/1:38,25:28:63:0.397:2
chr1	9324670	rs9434743	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:41,31:26:73:0.431:2	0/1:16,14:27:30:0.467:2	./.	0/1:41,22:28:63:0.349:2	./.	0/1:60,27:28:87:0.310:2	0/1:40,6:30:46:0.130:2	0/1:0,35:28:36:1.00:2	./.	0/1:23,17:27:40:0.425:2	./.
chr1	9416151	rs9435243	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:29:11:0.636:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	9416346	rs3795309	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,8:29:24:0.333:2	./.	./.	0/1:18,15:30:33:0.455:2	./.	./.	0/1:15,10:30:25:0.400:2	./.
chr1	9662209	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:33:92:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	9670834	rs4926472	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:31:32:1.00:2	0/1:0,20:31:20:1.00:2	0/1:7,3:31:10:0.300:2	0/1:2,36:32:38:0.947:2	0/1:17,9:31:26:0.346:2	0/1:20,40:31:60:0.667:2	0/1:0,29:32:29:1.00:2	0/1:19,25:31:44:0.568:2	0/1:26,22:33:48:0.458:2	0/1:8,11:33:19:0.579:2	0/1:0,15:32:15:1.00:2
chr1	9777599	rs61755420	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,42:32:72:0.583:2	./.	./.	./.
chr1	9778889	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:31:111:0.036:2	./.	./.	./.	./.	./.
chr1	9780836	rs201274224	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:20,6:17:26:0.231:2	./.	0/1:52,20:11:73:0.278:2	0/1:58,25:9:83:0.301:2	0/1:39,15:13:54:0.278:2	./.	0/1:42,19:9:62:0.311:2	0/1:51,17:9:69:0.250:2	0/1:30,16:10:47:0.348:2	0/1:23,10:11:34:0.303:2
chr1	9782386	rs139848768	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,75:31:163:0.463:2	./.	0/1:74,74:29:149:0.500:2
chr1	9784423	rs11121484	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:32,47:31:79:0.595:2	0/1:26,19:32:45:0.422:2	./.	./.	./.	./.	0/1:47,25:32:72:0.347:2	./.	0/1:41,45:32:86:0.523:2	./.	./.
chr1	9784916	rs143168081	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:31:9:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	9790659	rs148584143	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,20:33:39:0.513:2	./.	./.
chr1	9804693	rs7550295	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:23,9:32:32:0.281:2	0/1:8,16:31:24:0.667:2	./.	./.	./.	./.	0/1:11,12:30:23:0.522:2	./.	0/1:20,18:32:38:0.474:2	./.	./.
chr1	9811541	rs11674	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:44,28:27:72:0.389:2	0/1:15,17:27:32:0.531:2	./.	./.	./.	./.	0/1:51,41:28:92:0.446:2	./.	0/1:43,36:29:79:0.456:2	./.	./.
chr1	9811653	rs35331030	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,65:32:160:0.406:2	./.	0/1:92,90:31:182:0.495:2
chr1	9833375	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:31:138:0.029:2	./.	./.	./.	./.	./.
chr1	10057305	rs111277407	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,18:31:47:0.383:2	0/1:22,11:28:33:0.333:2	./.
chr1	10068281	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,7:28:90:0.078:2	./.	./.	./.	./.	./.	./.
chr1	10093760	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:31:165:0.024:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	10190575	rs61760196	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,35:32:80:0.438:2	0/1:67,44:32:111:0.396:2
chr1	10218439	rs2273299	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,50:31:92:0.543:2	0/1:23,15:31:38:0.395:2	./.	0/1:37,22:29:59:0.373:2	./.	0/1:46,48:31:94:0.511:2	0/1:45,39:31:84:0.464:2	0/1:51,39:31:91:0.433:2
chr1	10218472	rs114291761	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,60:33:119:0.504:2	./.	./.
chr1	10228220	rs147961171	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,36:32:80:0.450:2	./.	./.	./.	./.
chr1	10238770	rs7546642	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,15:30:39:0.385:2	./.	./.	./.	./.	./.	./.	./.
chr1	10318652	rs12402052	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,13:29:13:1.00:2	./.	0/1:45,24:29:69:0.348:2	./.	./.	0/1:4,89:30:93:0.957:2	./.	./.	./.
chr1	10339129	rs72865963	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,69:32:128:0.539:2	0/1:102,94:33:196:0.480:2
chr1	10342420	rs200557182	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,22:32:55:0.407:2	./.	./.	./.	./.
chr1	10342522	rs17034660	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,59:32:108:0.546:2	0/1:69,69:32:138:0.500:2
chr1	10363664	rs41274458	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,37:33:77:0.481:2	./.	./.
chr1	10364057	rs41274462	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,19:32:50:0.380:2	./.	./.
chr1	10397567	rs2297881	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,80:32:161:0.497:2	0/1:89,68:30:157:0.433:2
chr1	10421878	rs12125492	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,31:30:53:0.585:2	./.	./.	./.	./.	./.	./.	./.
chr1	10425476	rs78662124	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,12:16:61:0.197:2	0/1:29,7:18:36:0.194:2	./.	0/1:51,12:20:63:0.190:2	0/1:47,10:16:57:0.175:2	0/1:40,12:20:53:0.231:2	0/1:40,11:15:51:0.216:2	0/1:68,16:16:84:0.190:2	0/1:44,19:17:63:0.302:2	0/1:34,11:14:45:0.244:2	0/1:47,15:19:62:0.242:2
chr1	10428611	rs201508062	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,41:30:87:0.471:2	./.	./.	./.
chr1	10435324	rs11121552	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	0/1:27,23:31:50:0.460:2	./.	./.	0/1:1,49:31:50:0.980:2	./.	./.	./.
chr1	10436647	rs148690591	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,11:28:43:0.256:2	./.	./.	./.	./.
chr1	10460485	rs1049887	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,26:29:26:1.00:2	./.	0/1:58,50:30:108:0.463:2	./.	./.	0/1:4,153:29:157:0.975:2	./.	./.	./.
chr1	10473196	rs2229687	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:29:10:1.00:2	./.	0/1:32,28:29:60:0.467:2	./.	./.	0/1:1,66:29:67:0.985:2	./.	0/1:33,29:29:62:0.468:2	0/1:38,30:30:68:0.441:2
chr1	10473200	rs41289075	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,28:32:61:0.459:2	0/1:39,29:32:68:0.426:2
chr1	10477062	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,3:33:22:0.136:2	./.	./.	./.
chr1	10479791	rs41274480	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,24:32:70:0.343:2	0/1:35,47:32:82:0.573:2
chr1	10490550	rs661272	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,28:32:28:1.00:2	0/1:0,14:30:14:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	10511544	rs628462	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,35:31:61:0.574:2	0/1:0,52:29:52:1.00:2	0/1:41,26:31:67:0.388:2	0/1:24,25:31:49:0.510:2	./.	./.	0/1:24,31:31:55:0.564:2	0/1:0,64:30:64:1.00:2
chr1	10511589	rs666103	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:29:8:1.00:2	0/1:0,63:29:63:1.00:2	0/1:0,35:29:35:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,37:29:37:1.00:2	0/1:1,42:29:43:0.977:2	0/1:0,37:30:37:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,49:29:49:1.00:2
chr1	10523185	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,8:18:90:0.089:2
chr1	10596341	rs12375	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:1,66:31:67:0.985:2	0/1:3,51:32:54:0.944:2	0/1:0,5:27:5:1.00:2	./.	./.	0/1:60,54:30:114:0.474:2	./.	0/1:0,115:31:115:1.00:2	0/1:0,93:32:93:1.00:2	0/1:67,46:30:113:0.407:2	./.
chr1	10687329	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,5:29:128:0.039:2	./.	./.
chr1	10689942	rs11539794	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,23:31:49:0.469:2	./.	./.	0/1:35,27:30:62:0.435:2	./.	./.	./.	0/1:6,17:31:23:0.739:2
chr1	10702997	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:32:183:0.022:2	./.	./.	./.
chr1	10705110	rs4845941	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,56:30:123:0.455:2	./.	./.	./.	./.	./.	./.	./.
chr1	10708142	rs778228	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:33:11:1.00:2	0/1:72,54:31:126:0.429:2	./.	./.	0/1:69,59:31:128:0.461:2	./.	./.	./.	0/1:56,20:31:76:0.263:2
chr1	10709441	rs284299	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:32:10:0.500:2	0/1:67,37:31:104:0.356:2	./.	./.	0/1:32,36:32:68:0.529:2	./.	./.	./.	0/1:24,34:31:58:0.586:2
chr1	10713765	rs284294	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:8,5:26:13:0.385:2	0/1:3,4:32:7:0.571:2	0/1:6,3:31:9:0.333:2	0/1:11,7:30:18:0.389:2	./.	0/1:4,3:29:7:0.429:2	./.	0/1:0,14:28:14:1.00:2	0/1:5,5:31:10:0.500:2	0/1:1,3:26:4:0.750:2	0/1:0,3:29:3:1.00:2
chr1	10713902	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:32:121:0.033:2	./.	./.	./.
chr1	10719818	rs146116942	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,44:31:91:0.484:2	./.
chr1	10725387	rs17035539	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,25:29:62:0.403:2	./.
chr1	10725498	rs284322	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:32:12:0.667:2	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	0/1:0,2:33:2:1.00:2
chr1	10725587	rs76910492	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,8:28:10:0.800:2	./.
chr1	11007856	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,11:13:65:0.172:2	./.	./.	./.	./.	./.	./.	./.
chr1	11008102	rs1281018	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,41:31:69:0.594:2	./.	0/1:34,28:31:62:0.452:2	./.	./.	./.	./.
chr1	11008341	rs10864483	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:20,20:30:40:0.500:2	0/1:12,11:31:23:0.478:2	./.	0/1:27,20:30:47:0.426:2	./.	./.	./.	./.	./.	0/1:28,10:31:38:0.263:2	./.
chr1	11008497	rs1281017	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,35:31:68:0.522:2	./.	0/1:0,74:31:75:1.00:2	0/1:36,46:31:82:0.561:2	./.	./.	./.
chr1	11008594	rs1281016	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,65:29:118:0.551:2	./.	0/1:57,72:32:129:0.558:2	./.	./.	./.	./.
chr1	11008695	rs17036032	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,12:28:23:0.522:2	0/1:22,18:28:40:0.450:2	./.	./.	./.
chr1	11009679	rs1281013	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,19:29:55:0.345:2	./.	0/1:26,34:29:60:0.567:2	./.	./.	./.	./.
chr1	11009703	rs1281012	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,31:31:68:0.456:2	./.	0/1:30,38:32:68:0.559:2	./.	./.	./.	./.
chr1	11014118	rs45537241	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,41:28:131:0.313:2	0/1:110,65:29:175:0.371:2	./.	./.	./.
chr1	11014127	rs184250574	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,35:32:114:0.307:2	./.	./.	./.	./.
chr1	11015165	rs75130475	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,22:32:45:0.489:2	0/1:25,43:33:68:0.632:2	./.	./.	./.
chr1	11017753	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,4:32:101:0.040:2	./.	./.	./.	./.	./.	./.
chr1	11018765	rs12758610	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,14:31:26:0.538:2	./.	0/1:23,13:30:36:0.361:2	./.	./.	./.	./.
chr1	11077010	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,3:33:52:0.059:2	./.	./.	./.	./.	./.
chr1	11083297	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.	./.	./.
chr1	11087524	rs1782455	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,49:33:89:0.551:2	0/1:35,26:32:61:0.426:2	0/1:0,18:32:18:1.00:2	0/1:72,54:32:126:0.429:2	0/1:46,44:32:90:0.489:2	0/1:1,111:32:112:0.991:2	./.	0/1:0,117:32:118:1.00:2	0/1:1,126:33:127:0.992:2	0/1:0,107:31:107:1.00:2	0/1:0,133:33:133:1.00:2
chr1	11090897	rs2273346	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,91:31:177:0.517:2	0/1:49,68:29:117:0.581:2	./.
chr1	11090916	rs12711521	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,61:31:132:0.462:2	0/1:40,42:32:82:0.512:2	0/1:0,12:31:12:1.00:2	0/1:80,78:30:158:0.494:2	0/1:75,69:30:144:0.479:2	0/1:0,128:29:128:1.00:2	./.	0/1:2,152:30:154:0.987:2	0/1:93,82:31:175:0.469:2	0/1:71,40:31:111:0.360:2	0/1:1,145:31:146:0.993:2
chr1	11097867	rs12142107	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,24:33:67:0.358:2	./.	./.
chr1	11102939	rs61735598	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,91:31:189:0.481:2	./.
chr1	11106617	rs138386377	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,15:31:54:0.278:2	./.
chr1	11114940	rs13616	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,24:33:45:0.533:2	./.	./.
chr1	11115034	rs146632472	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,15:33:33:0.455:2	./.
chr1	11115898	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:32:148:0.027:2	./.	./.	./.	./.
chr1	11128712	rs147762859	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,4:33:101:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr1	11132217	rs1130683	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,15:31:32:0.469:2	0/1:18,13:31:31:0.419:2	0/1:0,4:30:4:1.00:2	0/1:38,35:31:73:0.479:2	./.	0/1:1,59:30:60:0.983:2	./.	0/1:33,25:32:58:0.431:2	0/1:26,20:32:46:0.435:2	0/1:19,20:31:39:0.513:2	0/1:41,34:32:75:0.453:2
chr1	11137661	rs2273339	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,35:31:58:0.603:2	./.	./.
chr1	11140618	rs202153123	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,32:30:67:0.478:2	0/1:74,30:29:104:0.288:2	./.
chr1	11140620	rs1194754	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,32:33:65:0.492:2	0/1:56,45:29:101:0.446:2	./.
chr1	11140622	rs9430364	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:34,20:27:54:0.370:2	0/1:23,13:32:36:0.361:2	0/1:2,10:31:12:0.833:2	./.	0/1:71,10:20:81:0.123:2	0/1:4,35:31:39:0.897:2	0/1:93,8:20:101:0.079:2	0/1:34,29:28:63:0.460:2	0/1:33,14:31:47:0.298:2	0/1:56,24:32:80:0.300:2	0/1:33,24:27:57:0.421:2
chr1	11140626	rs61773686	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:30:75:0.053:2	./.	./.	./.
chr1	11140630	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,5:33:83:0.060:2	./.	./.	./.	./.	./.
chr1	11141187	rs2258621	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,57:30:104:0.548:2	0/1:40,32:29:72:0.444:2	0/1:0,20:28:20:1.00:2	0/1:83,87:29:171:0.512:2	./.	0/1:0,150:29:150:1.00:2	./.	0/1:101,78:29:179:0.436:2	0/1:0,145:30:145:1.00:2	0/1:67,52:27:119:0.437:2	0/1:69,61:29:130:0.469:2
chr1	11142859	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,4:32:138:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr1	11147646	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,4:33:68:0.059:2	./.	./.	./.	./.	./.	./.	./.
chr1	11150682	rs3737621	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,41:32:69:0.594:2	./.	./.
chr1	11158095	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,3:30:15:0.200:2	./.	./.	./.	./.	./.	./.
chr1	11159823	rs12133922	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,31:32:81:0.383:2	./.	./.
chr1	11181327	rs11121691	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,17:30:47:0.362:2	./.	./.	0/1:32,50:30:82:0.610:2	0/1:1,57:30:58:0.983:2	./.	0/1:0,94:31:94:1.00:2	0/1:60,39:30:99:0.394:2	./.	./.	0/1:26,30:31:56:0.536:2
chr1	11190646	rs2275527	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,43:31:90:0.483:2	0/1:25,35:30:60:0.583:2	./.	0/1:35,52:30:87:0.598:2	0/1:0,77:30:77:1.00:2	./.	0/1:2,50:30:52:0.962:2	0/1:30,45:30:75:0.600:2	./.	./.	0/1:27,25:31:52:0.481:2
chr1	11205058	rs1057079	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,36:32:74:0.486:2	0/1:19,17:33:36:0.472:2	0/1:0,8:32:8:1.00:2	0/1:39,43:31:82:0.524:2	./.	0/1:1,82:31:83:0.988:2	./.	0/1:40,37:32:77:0.481:2	0/1:49,29:33:78:0.372:2	0/1:26,22:32:48:0.458:2	0/1:50,36:32:86:0.419:2
chr1	11249885	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:32:178:0.022:2	./.	./.	./.	./.	./.
chr1	11253684	rs28991009	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,21:30:59:0.356:2	0/1:24,17:32:41:0.415:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	11255008	rs2076658	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,70:30:129:0.543:2	./.	./.
chr1	11273526	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,4:31:101:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr1	11288758	rs1064261	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,35:31:73:0.479:2	0/1:22,14:32:36:0.389:2	0/1:0,6:31:6:1.00:2	0/1:44,30:32:74:0.405:2	./.	0/1:0,79:30:79:1.00:2	./.	0/1:42,39:31:81:0.481:2	0/1:1,89:32:90:0.989:2	0/1:49,25:32:74:0.338:2	0/1:41,28:31:69:0.406:2
chr1	11301714	rs1135172	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,40:30:86:0.465:2	0/1:28,26:30:54:0.481:2	0/1:0,16:30:16:1.00:2	0/1:61,59:30:120:0.492:2	./.	0/1:0,133:29:133:1.00:2	0/1:172,5:27:177:0.028:2	0/1:75,104:29:179:0.581:2	0/1:0,114:30:114:1.00:2	0/1:48,33:29:82:0.407:2	0/1:45,64:29:110:0.587:2
chr1	11316154	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:28:76:0.053:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	11316244	rs12120294	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,14:30:34:0.412:2	./.	0/1:14,14:30:28:0.500:2	./.
chr1	11354893	rs2744814	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,81:32:178:0.455:2	./.
chr1	11354910	rs190801584	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,17:30:32:0.531:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	11354919	rs2788540	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,69:31:141:0.489:2	./.
chr1	11561164	rs41274528	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,16:30:38:0.421:2	./.	0/1:10,9:32:19:0.474:2	./.
chr1	11561593	rs2817580	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,24:29:24:1.00:2	0/1:0,12:25:12:1.00:2	0/1:0,20:29:20:1.00:2	./.	./.	0/1:9,3:29:12:0.250:2	0/1:9,4:29:13:0.308:2	0/1:0,18:30:18:1.00:2
chr1	11561937	rs12144924	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,41:28:87:0.471:2	./.	0/1:37,14:30:51:0.275:2	./.
chr1	11562913	rs60362998	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,50:33:99:0.505:2	./.	0/1:41,29:33:70:0.414:2	./.
chr1	11579470	rs2072994	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,13:31:35:0.371:2	0/1:15,12:31:27:0.444:2	./.	0/1:0,55:30:55:1.00:2	0/1:0,67:30:67:1.00:2	0/1:0,58:30:58:1.00:2	0/1:35,29:31:64:0.453:2	./.	0/1:39,38:31:77:0.494:2	0/1:29,21:30:50:0.420:2	0/1:0,41:29:41:1.00:2
chr1	11579504	rs2072993	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:32:7:1.00:2	./.	./.	./.	./.	./.	0/1:44,30:31:74:0.405:2	./.	./.
chr1	11589705	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:34:120:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	11589911	rs2076468	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,11:30:19:0.579:2	./.	./.	./.	./.	./.	0/1:38,62:32:100:0.620:2	./.	./.
chr1	11595642	rs200620988	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,41:31:98:0.418:2	./.	./.	./.
chr1	11596455	rs2594310	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,42:32:87:0.483:2	./.	0/1:15,18:32:33:0.545:2	./.
chr1	11710561	rs9614	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:19,22:28:41:0.537:2	0/1:12,18:29:30:0.600:2	0/1:7,8:29:15:0.533:2	./.	./.	./.	0/1:24,21:29:45:0.467:2	./.	0/1:27,40:30:67:0.597:2	./.	./.
chr1	11714368	rs2272983	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	0/1:0,2:35:2:1.00:2	./.	./.	./.	./.	./.
chr1	11718322	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,3:36:76:0.040:2	./.
chr1	11728866	rs138203471	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,31:28:73:0.425:2	./.
chr1	11728894	rs3125818	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,6:31:18:0.333:2	./.	./.	./.	./.	./.	0/1:49,45:32:94:0.479:2	0/1:46,41:31:87:0.471:2	./.
chr1	11728952	rs7514198	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,24:31:73:0.329:2	0/1:40,21:32:61:0.344:2	./.	./.	./.	./.
chr1	11733795	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,6:32:182:0.033:2
chr1	11737551	rs2233018	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,27:29:63:0.429:2	0/1:23,26:30:49:0.531:2	./.	./.	./.	./.
chr1	11740559	rs2233014	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,7:31:14:0.500:2	./.
chr1	11766424	rs11121804	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:35,34:32:69:0.493:2	0/1:13,16:32:29:0.552:2	./.	./.	0/1:59,49:31:108:0.454:2	./.	./.	0/1:3,141:31:144:0.979:2	./.	./.	./.
chr1	11769428	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2
chr1	11771988	rs17037327	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,33:33:66:0.500:2	./.	./.
chr1	11772491	rs76390929	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,19:32:44:0.432:2
chr1	11832289	rs61773952	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,98:31:179:0.547:2	0/1:76,76:32:152:0.500:2	./.	0/1:81,85:31:166:0.512:2
chr1	11832311	rs10779764	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,98:32:99:0.990:2	0/1:0,50:33:50:1.00:2	0/1:8,7:33:15:0.467:2	0/1:102,66:32:168:0.393:2	0/1:83,49:33:132:0.371:2	0/1:0,117:32:117:1.00:2	0/1:99,70:33:169:0.414:2	0/1:88,64:33:152:0.421:2	0/1:69,64:34:133:0.481:2	0/1:0,114:33:114:1.00:2	0/1:81,58:33:139:0.417:2
chr1	11835556	rs41275456	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,7:30:17:0.412:2	0/1:52,49:32:101:0.485:2	0/1:70,70:32:140:0.500:2	./.	./.	./.	./.	./.	./.
chr1	11836628	rs6699881	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,121:30:122:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,13:29:13:1.00:2	0/1:1,144:31:145:0.993:2	0/1:4,132:31:136:0.971:2	0/1:1,125:30:126:0.992:2	0/1:74,54:30:128:0.422:2	0/1:70,71:30:141:0.504:2	0/1:57,71:32:128:0.555:2	0/1:0,102:30:102:1.00:2	0/1:44,35:30:79:0.443:2
chr1	11836670	rs41275458	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,18:30:35:0.514:2	0/1:110,83:31:193:0.430:2	0/1:117,79:31:196:0.403:2	./.	./.	./.	./.	./.	./.
chr1	11836682	rs7538516	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,178:31:178:1.00:2	0/1:1,120:31:123:0.992:2	0/1:23,17:30:40:0.425:2	0/1:84,104:31:189:0.553:2	0/1:83,110:30:195:0.570:2	0/1:1,176:30:178:0.994:2	0/1:106,90:31:196:0.459:2	0/1:96,94:31:191:0.495:2	0/1:78,111:31:189:0.587:2	0/1:0,187:31:187:1.00:2	0/1:94,97:30:191:0.508:2
chr1	11838762	rs72640211	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,11:29:29:0.379:2	./.	0/1:117,75:29:192:0.391:2	./.	./.	./.	./.	./.	./.
chr1	11838841	rs56001051	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,10:31:19:0.526:2	0/1:77,70:32:147:0.476:2	0/1:86,77:32:163:0.472:2	./.	./.	./.	./.	./.	./.
chr1	11838848	rs6697244	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,111:31:111:1.00:2	0/1:0,63:31:63:1.00:2	0/1:11,7:30:18:0.389:2	0/1:69,74:30:143:0.517:2	0/1:71,79:29:150:0.527:2	0/1:1,127:30:128:0.992:2	0/1:87,72:31:159:0.453:2	0/1:89,72:31:161:0.447:2	0/1:73,80:32:153:0.523:2	0/1:0,97:30:97:1.00:2	0/1:63,49:31:112:0.438:2
chr1	11839009	rs55685198	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,4:29:8:0.500:2	0/1:32,16:28:48:0.333:2	0/1:28,16:28:44:0.364:2	./.	./.	./.	./.	./.	./.
chr1	11839033	rs55668272	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,17:31:29:0.586:2	./.	./.	./.	./.
chr1	11839034	rs55967531	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,6:30:9:0.667:2	0/1:41,29:31:70:0.414:2	0/1:26,18:27:44:0.409:2	./.	./.	./.	./.	./.	./.
chr1	11839923	rs12561919	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,35:32:75:0.467:2	0/1:45,29:31:74:0.392:2	./.	0/1:31,34:33:65:0.523:2	./.	./.	./.	./.
chr1	11839966	rs4846043	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:30:32:1.00:2	0/1:0,14:31:14:1.00:2	0/1:1,2:32:3:0.667:2	0/1:12,18:29:30:0.600:2	0/1:6,12:30:18:0.667:2	0/1:0,28:29:28:1.00:2	0/1:6,9:32:15:0.600:2	0/1:12,12:31:24:0.500:2	0/1:6,11:32:17:0.647:2	0/1:0,19:29:19:1.00:2	0/1:3,6:31:9:0.667:2
chr1	11839972	rs41275462	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,10:32:22:0.455:2	0/1:8,6:32:14:0.429:2	./.	./.
chr1	11839998	rs4846044	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,21:30:21:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,14:27:14:1.00:2	0/1:0,18:28:18:1.00:2	0/1:0,14:30:14:1.00:2	0/1:4,10:31:14:0.714:2	0/1:0,20:27:20:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,12:29:12:1.00:2	0/1:0,7:30:7:1.00:2
chr1	11844330	rs10864543	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:32:54:1.00:2	0/1:0,32:32:32:1.00:2	0/1:4,9:32:13:0.692:2	0/1:46,42:32:88:0.477:2	0/1:35,55:32:90:0.611:2	0/1:0,82:31:82:1.00:2	0/1:55,30:31:85:0.353:2	0/1:42,54:33:96:0.563:2	0/1:43,53:32:96:0.552:2	0/1:0,72:32:72:1.00:2	0/1:40,56:33:96:0.583:2
chr1	11844520	rs41275466	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:31:7:0.857:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	11845222	rs55867221	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,7:29:18:0.389:2	./.	./.	./.	./.	./.	./.
chr1	11847449	rs3737967	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,22:31:39:0.564:2	./.	./.	./.	./.	./.	./.	./.
chr1	11848068	rs1537514	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,11:32:19:0.579:2	0/1:53,35:32:88:0.398:2	0/1:65,60:31:126:0.480:2	./.	./.	./.	./.	./.	./.
chr1	11849447	rs868014	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:28:64:1.00:2	0/1:0,29:29:29:1.00:2	0/1:0,12:30:12:1.00:2	0/1:1,47:29:48:0.979:2	0/1:0,43:29:43:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,31:29:31:1.00:2	0/1:1,50:28:51:0.980:2	0/1:1,48:29:49:0.980:2	0/1:0,53:30:53:1.00:2	0/1:0,55:29:55:1.00:2
chr1	11850750	rs35737219	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,85:31:194:0.438:2	./.	./.	./.	./.
chr1	11850927	rs2274976	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,76:31:155:0.490:2	./.	./.	./.	./.	./.	./.	./.
chr1	11854457	rs4846051	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,33:32:33:1.00:2	0/1:1,64:31:65:0.985:2	0/1:0,49:32:49:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,70:31:70:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,70:31:70:1.00:2
chr1	11854476	rs1801131	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,5:33:13:0.385:2	0/1:34,38:33:72:0.528:2	0/1:27,25:33:52:0.481:2	./.	0/1:29,29:32:58:0.500:2	0/1:38,33:33:71:0.465:2	./.	./.	0/1:41,48:32:89:0.539:2
chr1	11854819	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:32:169:0.024:2	./.	./.
chr1	11854896	rs2066462	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:33:3:0.667:2	0/1:42,24:31:66:0.364:2	0/1:25,31:30:56:0.554:2	./.	./.	./.	./.	./.	./.
chr1	11856378	rs1801133	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,23:31:54:0.426:2	0/1:13,17:31:30:0.567:2	./.	0/1:47,36:31:83:0.434:2	0/1:57,55:30:112:0.491:2	0/1:56,43:30:100:0.434:2	0/1:56,49:30:105:0.467:2	0/1:53,42:30:95:0.442:2	0/1:48,38:31:86:0.442:2	0/1:0,73:30:73:1.00:2	0/1:31,30:29:61:0.492:2
chr1	11863057	rs2066470	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,3:31:9:0.333:2	0/1:34,36:32:70:0.514:2	0/1:35,22:30:57:0.386:2	./.	./.	./.	./.	./.	./.
chr1	11875979	rs146547070	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,24:31:48:0.500:2	./.	./.	./.	./.	./.	./.
chr1	11876662	rs17376328	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:30:13:0.385:2	./.	0/1:74,69:30:143:0.483:2	./.	./.	./.	./.	./.	./.
chr1	11884555	rs198400	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,73:33:74:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,52:32:52:1.00:2
chr1	11884619	rs41275474	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,27:32:69:0.391:2	./.	./.	./.	./.
chr1	11887181	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:35:8:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	11896141	rs41275498	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,97:31:185:0.524:2	./.	./.
chr1	11897082	rs41275500	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,24:30:38:0.632:2	./.	./.	./.	./.	./.	./.	./.
chr1	11898789	rs2272803	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,45:32:71:0.634:2	./.	./.	./.	./.	./.	./.	./.
chr1	11898849	rs198409	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,55:30:102:0.539:2	./.	./.	./.	./.
chr1	11898859	rs55741089	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:28:16:0.563:2	./.	0/1:48,50:28:98:0.510:2	./.	./.	./.	./.	./.	./.
chr1	11899033	rs1023252	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:30:8:0.375:2	0/1:30,22:29:52:0.423:2	0/1:38,25:30:63:0.397:2	./.	./.	0/1:41,29:30:70:0.414:2	0/1:30,21:31:51:0.412:2	./.	0/1:37,34:30:71:0.479:2
chr1	11906068	rs5065	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,73:29:150:0.487:2	./.	./.	./.	./.
chr1	11907648	rs5063	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,74:31:146:0.507:2	./.	./.	./.	./.	./.	./.	./.
chr1	11918444	rs61761991	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,21:32:41:0.512:2	0/1:13,13:32:26:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	11918519	rs5229	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,10:31:22:0.455:2	./.
chr1	11982703	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:157,5:33:162:0.031:2	./.	./.	0/1:173,5:32:178:0.028:2	./.	./.	./.	./.	./.	./.	0/1:168,7:32:175:0.040:2
chr1	11982828	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2	./.	./.
chr1	11983041	rs33910280	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,82:30:176:0.466:2	./.	./.	./.	./.
chr1	11983206	rs3795408	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:133,4:32:137:0.029:2	0/1:0,35:31:35:1.00:2	0/1:90,86:31:176:0.489:2	0/1:105,79:31:184:0.429:2	0/1:109,67:30:176:0.381:2	0/1:85,97:31:182:0.533:2	0/1:1,173:31:174:0.994:2	0/1:107,86:31:193:0.446:2	0/1:85,75:31:160:0.469:2	./.
chr1	11985323	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,3:35:96:0.031:2	0/1:50,3:33:53:0.057:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	11985396	.	A	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:160,26:32:188:0.140:2	0/1:99,11:32:110:0.100:2	./.	0/1:183,12:31:195:0.062:2	0/1:184,7:30:191:0.037:2	./.	0/1:180,16:31:196:0.082:2	./.	0/1:178,19:30:197:0.096:2	0/1:179,8:30:187:0.043:2	0/1:164,19:30:184:0.104:2
chr1	12009955	rs7529452	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	0/1:42,32:32:74:0.432:2	0/1:22,22:29:44:0.500:2	./.	0/1:30,32:31:62:0.516:2	0/1:21,26:32:47:0.553:2	./.	./.
chr1	12009956	rs7551175	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,16:30:51:0.314:2	./.	./.	./.	./.	./.	0/1:19,30:31:49:0.612:2	./.
chr1	12010469	rs2273285	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,30:31:54:0.556:2	./.	./.	./.	./.	./.	0/1:29,26:30:55:0.473:2	./.
chr1	12024235	rs1130529	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:31:8:1.00:2	./.	0/1:32,42:31:74:0.568:2	0/1:32,43:31:75:0.573:2	./.	0/1:32,21:29:53:0.396:2	0/1:17,29:32:46:0.630:2	./.	./.
chr1	12026355	rs2230898	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,21:29:48:0.438:2	./.	./.	./.	./.	./.	0/1:12,13:30:25:0.520:2	./.
chr1	12032959	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:33:97:0.041:2
chr1	12052647	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,61:28:144:0.424:2	0/1:52,33:27:85:0.388:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	12065841	rs1042837	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,84:32:171:0.491:2	./.
chr1	12082334	rs11553925	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:30:10:0.400:2	./.	0/1:51,27:29:78:0.346:2	./.	0/1:22,27:30:49:0.551:2	./.	./.	0/1:0,44:30:44:1.00:2	./.
chr1	12082461	rs11588712	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:33:11:0.636:2	./.	0/1:57,53:32:110:0.482:2	./.	./.	./.	./.	0/1:35,34:32:69:0.493:2	./.
chr1	12082881	rs11588779	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:33:15:0.400:2	./.	0/1:73,52:31:125:0.416:2	./.	0/1:73,45:32:118:0.381:2	./.	./.	0/1:0,70:33:70:1.00:2	./.
chr1	12082926	rs2295283	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,14:33:14:1.00:2	0/1:52,48:33:100:0.480:2	0/1:2,139:33:141:0.986:2	0/1:52,53:33:105:0.505:2	0/1:87,59:33:146:0.404:2	0/1:87,62:33:149:0.416:2	0/1:0,111:34:111:1.00:2	0/1:0,61:33:61:1.00:2	0/1:57,30:33:87:0.345:2
chr1	12089348	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:35:56:0.071:2	./.	./.
chr1	12164437	rs2230622	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,38:32:71:0.535:2	0/1:20,23:31:43:0.535:2	./.	0/1:67,53:30:120:0.442:2	0/1:62,60:30:122:0.492:2	0/1:36,80:30:116:0.690:2	./.	./.	0/1:40,38:32:78:0.487:2	./.	./.
chr1	12175700	rs147298360	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,3:35:82:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	12175729	rs1763642	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:32:66:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,167:32:167:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,169:32:169:1.00:2	0/1:0,138:32:138:1.00:2	0/1:0,101:33:101:1.00:2	0/1:0,96:33:96:1.00:2	0/1:0,68:32:69:1.00:2
chr1	12198297	rs476488	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,32:29:62:0.525:2	./.	./.	./.
chr1	12248942	rs945439	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,7:30:23:0.304:2	0/1:16,9:30:25:0.360:2	./.	0/1:12,6:30:18:0.333:2	./.	./.	./.	./.
chr1	12252955	rs1061622	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,23:33:43:0.535:2	0/1:35,26:32:61:0.426:2	./.	0/1:48,32:33:80:0.400:2	./.	./.	./.	./.
chr1	12322081	rs140107975	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,54:34:94:0.574:2	./.	./.
chr1	12336147	rs7546794	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,59:32:138:0.428:2	./.	./.	./.	./.	./.	./.
chr1	12339619	rs4845898	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,66:29:121:0.545:2	0/1:40,31:30:71:0.437:2	./.	./.	./.	./.	0/1:0,96:29:96:1.00:2	./.
chr1	12343631	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:33:11:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	12371873	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,6:32:178:0.034:2
chr1	12371888	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:32:110:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	12379643	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:179,4:33:183:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr1	12382751	rs35102018	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:31:10:0.500:2	./.	./.	./.	./.	0/1:38,54:31:92:0.587:2	./.	./.	./.
chr1	12389953	rs79566132	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,16:31:32:0.500:2	./.	./.	./.	./.	./.	./.
chr1	12401868	rs28551666	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,11:33:19:0.579:2	0/1:12,7:32:19:0.368:2	./.	0/1:0,23:33:23:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,23:32:23:1.00:2	0/1:13,21:33:34:0.618:2	0/1:0,36:32:36:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,30:33:30:1.00:2
chr1	12401880	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,13:30:24:0.542:2	./.	./.	./.	./.	./.	./.	./.
chr1	12406664	rs41279460	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,62:31:140:0.443:2	./.	./.	./.	./.	./.	0/1:46,53:31:99:0.535:2	./.
chr1	12429611	rs2295338	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,28:32:80:0.350:2	./.	./.	./.	./.
chr1	12446314	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:30:121:0.033:2	./.	./.
chr1	12568964	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:33:164:0.024:2
chr1	12628459	rs11121940	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,48:32:103:0.466:2	./.
chr1	12638964	rs2275875	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,44:28:44:1.00:2	0/1:0,38:27:38:1.00:2	./.	0/1:1,75:26:76:0.987:2	0/1:41,51:27:92:0.554:2	0/1:0,67:27:68:1.00:2	0/1:0,70:28:70:1.00:2	0/1:29,62:27:91:0.681:2	0/1:0,46:27:46:1.00:2	0/1:0,61:27:61:1.00:2	0/1:0,45:27:45:1.00:2
chr1	12640650	rs11540058	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,21:33:55:0.382:2	./.	./.	0/1:29,36:32:65:0.554:2	./.	./.	./.	0/1:37,39:33:76:0.513:2
chr1	12776344	rs3000859	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,175:33:175:1.00:2	0/1:2,167:32:169:0.988:2	0/1:0,30:31:30:1.00:2	0/1:0,172:32:172:1.00:2	0/1:113,71:32:184:0.386:2	0/1:0,172:32:172:1.00:2	./.	0/1:2,184:32:186:0.989:2	0/1:99,87:33:186:0.468:2	0/1:104,82:32:186:0.441:2	0/1:1,165:32:166:0.994:2
chr1	12779560	rs3010876	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:31:90:1.00:2	0/1:0,61:31:61:1.00:2	0/1:19,5:32:24:0.208:2	0/1:87,51:32:138:0.370:2	0/1:47,50:31:97:0.515:2	0/1:1,86:32:87:0.989:2	0/1:0,95:32:95:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,97:32:97:1.00:2	./.	0/1:0,102:32:102:1.00:2
chr1	12779563	rs201816325	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,5:32:24:0.208:2	./.	./.	./.	./.	./.	0/1:56,45:34:101:0.446:2	./.	./.
chr1	12779618	rs3010877	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:32:96:1.00:2	0/1:0,49:31:49:1.00:2	0/1:14,4:32:18:0.222:2	0/1:69,39:31:108:0.361:2	0/1:54,54:32:108:0.500:2	0/1:1,102:32:103:0.990:2	0/1:0,82:32:82:1.00:2	0/1:2,102:32:104:0.981:2	0/1:0,80:33:80:1.00:2	./.	0/1:0,103:32:103:1.00:2
chr1	12785494	rs7513079	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,10:32:10:1.00:2	0/1:0,3:30:3:1.00:2	./.	0/1:12,6:31:18:0.333:2	0/1:8,13:31:21:0.619:2	0/1:0,10:29:10:1.00:2	0/1:0,16:31:16:1.00:2	0/1:8,9:32:17:0.529:2	0/1:0,15:32:15:1.00:2	./.	0/1:0,20:31:20:1.00:2
chr1	12785749	rs11121969	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,60:32:127:0.472:2	./.	./.	./.
chr1	12819368	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:32:108:0.038:2	./.	./.	./.
chr1	12820870	rs1132185	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,35:33:35:1.00:2	0/1:0,20:33:20:1.00:2	./.	0/1:29,32:33:61:0.525:2	0/1:40,33:32:73:0.452:2	0/1:1,56:32:57:0.982:2	0/1:0,71:32:71:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,63:33:63:1.00:2	./.	0/1:0,54:33:55:1.00:2
chr1	12835158	rs77870074	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,56:31:136:0.412:2	./.	./.	./.	./.	0/1:89,68:32:157:0.433:2	./.	./.
chr1	12835168	rs17346571	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,60:31:141:0.426:2	./.	./.	./.	./.	0/1:89,63:32:152:0.414:2	./.	./.
chr1	12835868	rs1812242	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,185:30:185:1.00:2	0/1:0,133:30:133:1.00:2	0/1:8,18:30:26:0.692:2	./.	0/1:0,166:30:166:1.00:2	0/1:0,191:30:191:1.00:2	0/1:0,174:30:174:1.00:2	0/1:90,104:30:194:0.536:2	0/1:116,76:31:192:0.396:2	0/1:96,95:30:191:0.497:2	0/1:0,186:30:186:1.00:2
chr1	12835891	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,6:32:189:0.032:2	./.	./.	./.
chr1	12835929	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:191,4:32:195:0.021:2	./.	./.	./.	./.	./.	0/1:186,5:32:191:0.026:2	./.	./.	./.
chr1	12835994	rs145223711	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,82:32:191:0.429:2	./.	./.
chr1	12837376	rs202096976	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:137,5:32:142:0.035:2	./.	./.	./.	./.	0/1:149,6:33:155:0.039:2	./.	./.
chr1	12837463	rs112368379	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:32:15:0.600:2	./.	./.	./.	0/1:84,52:31:136:0.382:2	./.	./.	./.	./.
chr1	12837469	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:151,5:32:156:0.032:2	./.	./.	./.	./.	./.	./.
chr1	12837471	rs79193271	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:151,40:32:191:0.209:2	./.	./.	./.	./.	0/1:150,42:32:192:0.219:2	./.	./.
chr1	12837475	rs78132363	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:149,38:31:187:0.203:2	./.	./.	./.	./.	0/1:148,40:33:188:0.213:2	./.	./.
chr1	12837547	rs200191720	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:184,7:32:191:0.037:2	./.	./.	./.	./.	./.	./.
chr1	12837548	rs202100778	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:184,7:31:191:0.037:2	./.	./.	./.	./.	./.	./.
chr1	12837619	rs199506940	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,5:33:157:0.032:2	./.	./.
chr1	12837634	rs848578	T	A,C	.	PASS	AC=9,1;AF=0.300,0.033;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0/1:30:175:0.989:2	0/1:31:137:0.993:2	0/1:30:28:0.750:2	0/2:29:146:0.034:2	0/1:30:179:1.00:2	0/1:30:181:0.989:2	0/1:30:183:0.995:2	0/1:30:188:0.455:2	./.	0/1:30:186:0.478:2	0/1:31:179:1.00:2
chr1	12837652	rs200113689	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:32:155:0.026:2	./.	./.
chr1	12837720	rs201425552	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,17:30:111:0.153:2	./.	./.	./.	./.	0/1:101,14:30:115:0.122:2	./.	./.
chr1	12837728	rs77317880	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,18:31:104:0.173:2	./.	./.	./.	./.	0/1:94,14:30:109:0.130:2	./.	./.
chr1	12853403	rs1737157	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,50:32:50:1.00:2	0/1:72,23:31:95:0.242:2	./.	0/1:136,6:32:142:0.042:2	0/1:3,32:33:35:0.914:2	0/1:46,34:33:80:0.425:2	0/1:53,45:32:98:0.459:2
chr1	12853415	rs74459295	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:31:117:0.034:2	./.	0/1:159,7:30:166:0.042:2	0/1:40,4:31:44:0.091:2	./.	0/1:111,7:28:118:0.059:2
chr1	12854068	rs79492089	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,13:30:83:0.163:2	./.
chr1	12854090	rs79698223	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:71,7:31:78:0.090:2	0/1:54,7:32:61:0.115:2	./.	0/1:51,9:31:60:0.150:2	0/1:84,5:24:89:0.056:2	0/1:85,15:29:100:0.150:2	0/1:75,5:28:80:0.063:2	0/1:117,10:29:127:0.079:2	0/1:89,10:32:99:0.101:2	0/1:108,9:30:117:0.077:2	0/1:117,12:30:130:0.093:2
chr1	12854097	rs76193255	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:73,11:29:84:0.131:2	0/1:55,7:25:62:0.113:2	./.	0/1:62,16:29:78:0.205:2	0/1:89,5:27:94:0.053:2	0/1:92,18:30:110:0.164:2	0/1:83,5:29:88:0.057:2	0/1:124,10:29:134:0.075:2	0/1:95,13:30:108:0.120:2	0/1:118,9:29:128:0.071:2	0/1:123,12:29:135:0.089:2
chr1	12854105	rs76648802	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:77,11:32:88:0.125:2	0/1:59,7:31:66:0.106:2	./.	0/1:65,16:31:81:0.198:2	0/1:97,8:30:105:0.076:2	0/1:99,19:30:118:0.161:2	0/1:84,5:30:89:0.056:2	0/1:134,10:31:144:0.069:2	0/1:100,14:30:114:0.123:2	0/1:127,10:31:137:0.073:2	0/1:130,18:31:148:0.122:2
chr1	12854139	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:107,4:33:112:0.036:2	./.	./.	./.	0/1:97,6:33:103:0.058:2	./.	./.
chr1	12854140	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,4:32:112:0.036:2	./.	./.	./.	0/1:98,6:33:104:0.058:2	./.	./.
chr1	12854162	rs199893374	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:100,15:32:115:0.130:2	./.	0/1:11,4:31:15:0.267:2	0/1:76,15:30:91:0.165:2	0/1:80,5:28:85:0.059:2	0/1:119,7:30:126:0.056:2	./.	./.	0/1:57,22:33:79:0.278:2	0/1:114,22:32:136:0.162:2	0/1:110,16:31:127:0.127:2
chr1	12854188	rs76030350	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:104,17:29:121:0.140:2	./.	0/1:10,3:31:13:0.231:2	0/1:57,14:31:71:0.197:2	0/1:67,13:29:80:0.163:2	0/1:91,14:28:105:0.133:2	./.	0/1:100,11:31:111:0.099:2	0/1:55,18:31:73:0.247:2	0/1:93,24:29:118:0.205:2	0/1:96,19:29:115:0.165:2
chr1	12854272	rs61775050	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,20:31:84:0.238:2	./.	./.	./.	./.
chr1	12854280	rs2790782	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,4:31:113:0.035:2	./.	./.	./.	./.	0/1:176,6:30:182:0.033:2	./.
chr1	12854356	rs61775051	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:162,24:33:186:0.129:2	0/1:108,14:33:122:0.115:2	0/1:17,13:31:30:0.433:2	0/1:88,60:32:149:0.405:2	0/1:94,65:31:159:0.409:2	0/1:157,21:31:178:0.118:2	0/1:123,39:33:162:0.241:2	0/1:158,28:32:186:0.151:2	0/1:72,93:33:165:0.564:2	0/1:135,54:32:190:0.286:2	0/1:162,24:32:186:0.129:2
chr1	12854370	rs372514136	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:173,15:31:188:0.080:2	0/1:122,8:30:130:0.062:2	0/1:37,4:33:41:0.098:2	./.	./.	0/1:179,12:31:191:0.063:2	0/1:181,7:32:188:0.037:2	0/1:182,9:32:191:0.047:2	0/1:170,7:32:177:0.040:2	0/1:176,18:30:194:0.093:2	0/1:170,15:29:185:0.081:2
chr1	12854401	rs201717831	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:162,9:31:172:0.053:2	0/1:130,7:30:139:0.051:2	./.	0/1:167,6:30:173:0.035:2	./.	0/1:169,12:30:183:0.066:2	0/1:183,10:30:193:0.052:2	0/1:184,7:30:193:0.037:2	./.	0/1:169,13:31:185:0.071:2	0/1:177,8:32:186:0.043:2
chr1	12854414	rs1063769	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:168,11:31:179:0.061:2	0/1:131,9:32:140:0.064:2	0/1:44,16:31:60:0.267:2	0/1:104,67:31:171:0.392:2	0/1:99,79:31:178:0.444:2	0/1:166,20:31:187:0.108:2	0/1:140,50:32:190:0.263:2	0/1:175,11:32:187:0.059:2	0/1:64,87:32:151:0.576:2	0/1:130,55:31:185:0.297:2	0/1:176,11:31:187:0.059:2
chr1	12854428	rs1769774	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,90:31:172:0.523:2	0/1:105,70:31:175:0.400:2	./.	./.	0/1:95,58:32:153:0.379:2	0/1:108,72:31:180:0.400:2	0/1:110,64:32:174:0.368:2
chr1	12854474	rs1063774	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:160,6:28:166:0.036:2	0/1:122,4:32:126:0.032:2	./.	0/1:108,26:32:134:0.194:2	0/1:115,24:31:139:0.173:2	0/1:158,14:31:172:0.081:2	0/1:147,20:31:167:0.120:2	./.	0/1:140,11:34:151:0.073:2	0/1:142,24:33:166:0.145:2	0/1:176,10:31:186:0.054:2
chr1	12854479	rs1063775	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:157,6:32:163:0.037:2	0/1:128,4:31:132:0.030:2	./.	0/1:111,20:32:132:0.153:2	0/1:117,20:31:137:0.146:2	0/1:160,12:30:172:0.070:2	0/1:156,18:32:174:0.103:2	./.	0/1:143,9:31:152:0.059:2	0/1:149,19:31:168:0.113:2	0/1:180,10:32:191:0.053:2
chr1	12854510	rs76932259	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:120,10:33:130:0.077:2	0/1:154,6:31:160:0.038:2	./.	./.	./.	./.	0/1:187,7:31:194:0.036:2	0/1:189,5:32:194:0.026:2
chr1	12854530	rs1063776	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,176:30:177:0.994:2	0/1:0,126:30:126:1.00:2	0/1:9,18:30:27:0.667:2	./.	0/1:0,163:30:163:1.00:2	0/1:0,195:29:195:1.00:2	0/1:0,169:30:169:1.00:2	0/1:3,173:30:176:0.983:2	0/1:0,156:31:156:1.00:2	0/1:89,102:30:191:0.534:2	0/1:0,181:30:181:1.00:2
chr1	12854544	rs1063778	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,168:29:174:0.971:2	0/1:91,95:29:186:0.511:2	./.	./.	0/1:3,144:30:147:0.980:2	0/1:90,99:30:189:0.524:2	0/1:108,76:29:184:0.413:2
chr1	12854545	rs1063779	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,6:29:152:0.039:2	./.	./.
chr1	12855004	rs200225858	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:147,33:31:182:0.183:2	0/1:150,40:31:190:0.211:2	0/1:69,19:31:88:0.216:2	0/1:155,27:31:182:0.148:2	./.	0/1:168,27:31:195:0.138:2	./.	0/1:178,18:31:196:0.092:2	0/1:105,53:32:159:0.335:2	0/1:140,44:32:184:0.239:2	0/1:146,44:31:192:0.232:2
chr1	12855013	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,11:33:160:0.069:2	./.	./.
chr1	12855035	rs200453580	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,18:33:173:0.104:2	./.	./.
chr1	12855077	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,12:27:177:0.068:2	./.	./.
chr1	12855088	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:179,4:34:183:0.022:2	./.	./.	./.	./.	./.	./.
chr1	12855644	rs5003729	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:151,18:32:169:0.107:2	0/1:86,12:32:98:0.122:2	0/1:16,3:32:19:0.158:2	0/1:129,11:31:140:0.079:2	./.	0/1:159,29:31:188:0.154:2	0/1:110,21:31:131:0.160:2	0/1:155,28:30:183:0.153:2	0/1:122,17:29:139:0.122:2	0/1:148,33:32:181:0.182:2	0/1:158,21:32:179:0.117:2
chr1	12855647	rs200536957	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:145,18:31:163:0.110:2	0/1:86,12:31:98:0.122:2	./.	0/1:131,11:29:142:0.077:2	./.	0/1:158,29:30:187:0.155:2	0/1:110,21:30:131:0.160:2	0/1:154,28:31:182:0.154:2	0/1:122,15:29:138:0.109:2	0/1:147,32:32:179:0.179:2	0/1:159,21:30:180:0.117:2
chr1	12855648	rs200816125	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:143,18:32:161:0.112:2	0/1:85,12:32:97:0.124:2	0/1:15,3:31:18:0.167:2	0/1:130,12:30:143:0.085:2	./.	0/1:158,29:31:187:0.155:2	0/1:113,21:32:134:0.157:2	0/1:154,28:31:182:0.154:2	0/1:121,16:30:138:0.117:2	0/1:146,32:32:178:0.180:2	0/1:158,21:30:179:0.117:2
chr1	12855661	rs202131735	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:143,4:31:147:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr1	12855667	rs200190132	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,11:30:163:0.068:2	./.	./.
chr1	12855706	rs147917136	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:125,14:30:139:0.101:2	./.	./.	./.	./.	0/1:169,5:33:174:0.029:2	./.	./.
chr1	12855720	rs113708906	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:101,74:31:175:0.423:2	./.	./.	./.	./.	0/1:117,71:33:188:0.378:2	./.
chr1	12855740	rs146268837	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,27:32:173:0.156:2	./.	./.
chr1	12855752	rs80197258	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:143,5:27:148:0.034:2	./.	./.	./.	./.	./.	0/1:190,5:28:195:0.026:2	./.
chr1	12855759	rs137973987	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:130,4:33:134:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr1	12855774	rs75985223	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:136,8:24:144:0.056:2	./.	./.	./.	./.	0/1:142,22:29:164:0.134:2	0/1:180,7:27:187:0.037:2	./.
chr1	12855835	rs1063795	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,166:32:166:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,127:32:127:1.00:2	0/1:1,128:32:129:0.992:2	0/1:0,149:32:150:1.00:2	0/1:0,80:32:81:1.00:2	0/1:0,107:32:107:1.00:2	0/1:0,138:31:138:1.00:2
chr1	12855844	rs141509525	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,5:31:74:0.068:2	./.	./.
chr1	12855845	rs1063797	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,155:33:155:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,97:33:97:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,137:33:137:1.00:2	0/1:0,136:33:136:1.00:2	0/1:0,148:32:148:1.00:2	0/1:0,69:33:69:1.00:2	0/1:0,113:33:113:1.00:2	0/1:0,129:33:129:1.00:2
chr1	12855876	rs76778387	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:113,18:27:131:0.137:2	./.	./.	./.	./.	0/1:73,10:29:83:0.120:2	./.	./.
chr1	12855878	rs1052908	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,42:32:49:0.857:2	0/1:104,35:32:139:0.252:2	./.	./.	0/1:50,29:32:79:0.367:2	0/1:106,27:32:133:0.203:2	0/1:108,30:33:138:0.217:2
chr1	12855893	rs77615669	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,26:30:135:0.193:2	./.	./.	./.	./.	0/1:41,45:32:86:0.523:2	0/1:132,7:30:139:0.050:2	./.
chr1	12855895	rs200548257	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:32:138:0.029:2	./.
chr1	12855896	rs201337684	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:31:139:0.029:2	./.
chr1	12855898	rs76032448	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,32:31:92:0.348:2	./.	./.
chr1	12855934	rs150054541	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:123,22:30:145:0.152:2	./.	./.	./.	./.	0/1:143,10:32:153:0.065:2	./.	./.
chr1	12855954	rs200506341	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:142,6:33:148:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr1	12855962	rs149187716	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,31:31:181:0.172:2	./.	./.
chr1	12855990	rs199886880	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:166,13:30:179:0.073:2	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.
chr1	12855995	rs201353254	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:168,12:29:180:0.067:2	./.	./.	./.	./.	./.	./.	./.
chr1	12855996	rs138590692	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:168,11:32:179:0.061:2	./.	0/1:159,32:29:191:0.168:2	./.	./.	./.	./.	./.
chr1	12856010	rs61775053	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:134,54:32:188:0.287:2	0/1:132,57:32:189:0.302:2	0/1:35,6:33:41:0.146:2	0/1:134,47:33:181:0.260:2	0/1:192,4:32:196:0.020:2	0/1:127,62:32:189:0.328:2	0/1:110,77:32:187:0.412:2	0/1:109,86:32:195:0.441:2	0/1:103,80:33:183:0.437:2	0/1:155,35:32:191:0.184:2	0/1:110,76:32:187:0.409:2
chr1	12856015	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.
chr1	12856079	rs142994008	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,4:30:46:0.087:2	./.	./.	./.	./.	./.	./.	0/1:154,29:31:183:0.158:2	./.
chr1	12856087	rs141070565	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:138,55:32:193:0.285:2	0/1:136,46:31:182:0.253:2	./.	./.	0/1:165,31:32:196:0.158:2	./.	./.
chr1	12856105	rs146835774	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:149,31:32:180:0.172:2	0/1:155,34:32:189:0.180:2	./.	./.	./.	./.	./.	./.
chr1	12856106	rs145309716	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,43:29:172:0.250:2	./.	./.	./.	./.	0/1:143,42:29:185:0.227:2	./.	./.
chr1	12856111	rs61775054	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:139,49:32:188:0.261:2	0/1:107,40:32:147:0.272:2	0/1:25,11:33:36:0.306:2	0/1:107,63:32:170:0.371:2	0/1:146,36:31:183:0.198:2	0/1:117,53:32:170:0.312:2	0/1:121,55:32:176:0.313:2	0/1:115,77:33:192:0.401:2	0/1:140,43:34:183:0.235:2	0/1:101,79:33:180:0.439:2	0/1:115,74:32:189:0.392:2
chr1	12856146	rs1974302	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,37:31:105:0.352:2	0/1:90,23:32:113:0.204:2	./.	./.	0/1:105,15:34:120:0.125:2	0/1:105,27:32:132:0.205:2	0/1:120,22:33:143:0.155:2
chr1	12884977	rs2994112	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:163,5:32:168:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr1	12884981	rs4989318	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,68:28:133:0.511:2	./.	./.	./.	0/1:4,124:29:128:0.969:2	./.	./.
chr1	12884997	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,5:32:139:0.036:2	./.	./.	./.	./.	./.	./.	./.
chr1	12885003	rs4990293	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:121,5:31:126:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr1	12885127	rs201757978	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,3:32:34:0.088:2	./.	./.	./.	./.
chr1	12885168	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,3:33:21:0.143:2	./.	./.	./.
chr1	12885200	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,3:32:13:0.231:2	./.	./.	./.	./.	./.	./.
chr1	12907282	rs139731855	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,10:30:59:0.169:2	0/1:71,4:30:75:0.053:2	0/1:104,7:31:111:0.063:2	./.	0/1:117,8:25:126:0.064:2	./.	0/1:105,6:27:111:0.054:2	0/1:91,7:27:98:0.071:2
chr1	12907284	rs149796618	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,10:32:58:0.172:2	0/1:70,5:32:75:0.067:2	0/1:105,9:31:114:0.079:2	./.	0/1:115,9:26:124:0.073:2	0/1:109,4:32:113:0.035:2	0/1:104,6:31:110:0.055:2	0/1:88,7:31:96:0.074:2
chr1	12907285	rs148930640	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,10:32:57:0.175:2	0/1:72,4:31:76:0.053:2	0/1:105,7:32:113:0.063:2	./.	0/1:114,8:31:124:0.066:2	./.	0/1:104,6:31:110:0.055:2	0/1:88,7:30:96:0.074:2
chr1	12907316	rs112607517	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2
chr1	12907379	rs74055698	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,28:31:68:0.412:2	0/1:53,46:32:99:0.465:2	./.	./.	0/1:3,99:32:102:0.971:2	./.	./.
chr1	12907449	rs78163065	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,50:33:159:0.314:2	./.	./.
chr1	12907496	rs138700801	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,16:34:112:0.143:2	./.	./.
chr1	12907519	rs6702447	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,11:31:131:0.084:2	./.
chr1	12907533	rs141872266	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,15:33:94:0.160:2	./.	./.
chr1	12907620	rs2994092	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,3:35:57:0.053:2	./.
chr1	12907633	rs75660350	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,32:32:86:0.372:2	./.	./.
chr1	12907742	rs150671203	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,7:32:140:0.050:2	./.	./.
chr1	12907762	rs57026768	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,35:29:130:0.269:2	./.	./.
chr1	12907777	rs28391533	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,12:34:92:0.130:2	./.	./.	./.	./.	0/1:78,43:32:121:0.355:2	./.	./.
chr1	12907829	rs74866336	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,38:32:148:0.257:2
chr1	12907837	rs1736811	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:119,35:33:154:0.227:2	0/1:74,22:32:96:0.229:2	0/1:12,7:32:19:0.368:2	0/1:92,54:31:146:0.370:2	0/1:96,44:32:140:0.314:2	0/1:128,27:32:155:0.174:2	0/1:133,35:31:168:0.208:2	0/1:58,100:32:158:0.633:2	0/1:96,61:33:157:0.389:2	0/1:89,63:33:152:0.414:2	0/1:99,47:33:147:0.322:2
chr1	12907843	rs2982093	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:140,13:28:153:0.085:2	./.	./.	./.	0/1:155,8:29:163:0.049:2	./.	./.
chr1	12907848	rs140567799	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,8:33:165:0.048:2	./.	./.
chr1	12907885	rs848418	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:66,78:29:144:0.542:2	0/1:36,48:28:84:0.571:2	0/1:14,14:29:28:0.500:2	./.	0/1:73,76:29:149:0.510:2	0/1:59,70:30:130:0.543:2	0/1:73,70:29:143:0.490:2	0/1:143,32:28:175:0.183:2	0/1:123,42:30:165:0.255:2	0/1:104,58:28:162:0.358:2	0/1:85,58:28:143:0.406:2
chr1	12908080	rs41279490	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,30:32:196:0.153:2	./.	./.
chr1	12908130	rs41279492	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,34:31:196:0.173:2	./.	./.
chr1	12908234	rs12568448	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,20:31:68:0.294:2	0/1:64,15:31:79:0.190:2	./.	./.	0/1:44,25:32:69:0.362:2	./.	./.
chr1	12908236	rs1736809	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,32:32:91:0.352:2	0/1:31,23:31:54:0.426:2	0/1:11,6:32:17:0.353:2	0/1:46,67:32:113:0.593:2	0/1:44,19:32:63:0.302:2	0/1:33,39:31:72:0.542:2	0/1:23,37:32:60:0.617:2	0/1:47,34:32:81:0.420:2	0/1:27,38:32:65:0.585:2	0/1:45,53:32:98:0.541:2	0/1:73,63:32:136:0.463:2
chr1	12918891	rs77229081	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,69:32:121:0.570:2	./.	./.
chr1	12918963	rs9661554	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,99:31:190:0.521:2	0/1:85,93:31:178:0.522:2	./.	./.	0/1:81,94:32:176:0.537:2	./.	./.
chr1	12919064	rs3204790	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,6:34:82:0.073:2	0/1:60,60:32:120:0.500:2	0/1:83,60:31:143:0.420:2	./.	./.	0/1:0,147:32:147:1.00:2	./.	./.
chr1	12919068	rs3204791	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,9:32:86:0.105:2	./.	./.	./.	./.	0/1:139,11:30:150:0.073:2	./.	./.
chr1	12919079	rs9659529	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,45:32:97:0.464:2	0/1:77,60:32:137:0.438:2	./.	./.	0/1:70,69:33:139:0.496:2	./.	./.
chr1	12919081	rs45443899	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,40:31:87:0.460:2
chr1	12919095	rs116865587	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,17:30:79:0.215:2	./.	./.	./.	./.	0/1:105,17:29:122:0.139:2	./.	./.
chr1	12919111	rs9728577	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,41:32:105:0.390:2	./.	./.
chr1	12919587	rs17400817	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,19:29:60:0.317:2	0/1:49,37:30:86:0.430:2	./.	./.	0/1:85,25:30:110:0.227:2	./.	0/1:65,59:30:124:0.476:2
chr1	12919623	rs75838083	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,32:30:84:0.381:2	0/1:58,72:32:130:0.554:2	./.	./.	0/1:96,51:32:147:0.347:2	./.	./.
chr1	12919624	rs80027487	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,32:31:85:0.376:2	0/1:59,72:32:131:0.550:2	./.	./.	0/1:98,51:32:149:0.342:2	./.	./.
chr1	12919756	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:29:64:0.063:2	./.	./.	./.	./.
chr1	12919770	rs201702646	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,4:32:48:0.083:2	./.	./.	./.	./.	./.	./.	./.
chr1	12919833	rs150145103	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,4:29:49:0.082:2	./.	./.	./.	./.	./.	./.
chr1	12919840	rs371798387	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,4:31:49:0.082:2	./.	./.	./.	./.	./.	./.
chr1	12919872	rs3204798	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,34:32:73:0.466:2	./.	./.
chr1	12919891	rs75411676	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,33:30:63:0.524:2	./.	./.
chr1	12919928	rs72472698	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,32:32:55:0.582:2	0/1:46,35:32:81:0.432:2	./.	./.	0/1:38,19:32:57:0.333:2	./.	./.
chr1	12919934	rs3204805	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,27:31:52:0.519:2	0/1:48,32:31:80:0.400:2	./.	./.	0/1:1,57:33:58:0.983:2	./.	./.
chr1	12919963	rs72472699	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,6:32:54:0.111:2	0/1:33,39:32:72:0.542:2	0/1:48,43:32:92:0.473:2	./.	./.	0/1:53,29:32:83:0.354:2	./.	./.
chr1	12919983	rs77138000	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,57:32:129:0.442:2
chr1	12919994	rs115914708	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,4:32:74:0.054:2	./.	./.	./.	./.	./.	./.	./.
chr1	12920067	rs17038709	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,37:31:88:0.420:2	0/1:76,66:33:142:0.465:2	./.	./.	0/1:85,72:33:157:0.459:2	./.	./.
chr1	12921110	rs12139546	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,17:32:40:0.425:2	0/1:17,23:32:40:0.575:2	./.	./.	0/1:48,12:33:60:0.200:2	./.	./.
chr1	12921114	rs17404799	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,5:32:61:0.082:2	./.	./.
chr1	12921119	rs17404806	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:30:60:0.067:2	./.	./.
chr1	12921127	rs12139549	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,21:32:44:0.477:2	0/1:22,30:32:52:0.577:2	./.	./.	0/1:1,55:33:56:0.982:2	./.	0/1:33,43:32:76:0.566:2
chr1	12921132	rs12139550	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,23:32:46:0.500:2	0/1:24,33:31:57:0.579:2	./.	./.	0/1:43,17:33:60:0.283:2	./.	./.
chr1	12921156	rs17039293	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:30:77:0.052:2	./.	./.
chr1	12921229	rs1063789	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:132,5:29:137:0.036:2	./.	./.	./.	0/1:122,6:29:128:0.047:2	./.	./.
chr1	12921241	rs199970071	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,8:34:130:0.062:2	./.	./.
chr1	12921311	rs78050948	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:124,6:28:130:0.046:2	./.	./.	./.	./.	0/1:149,5:29:155:0.032:2	./.	./.
chr1	12921332	rs17039307	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:152,17:29:170:0.101:2	0/1:111,8:31:119:0.067:2	0/1:24,3:30:27:0.111:2	0/1:130,9:31:139:0.065:2	0/1:65,84:31:149:0.564:2	0/1:64,109:31:173:0.630:2	0/1:103,17:31:120:0.142:2	0/1:165,18:29:183:0.098:2	0/1:17,133:32:150:0.887:2	0/1:142,20:31:162:0.123:2	0/1:83,98:32:181:0.541:2
chr1	12921333	rs56145411	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,46:30:149:0.309:2	0/1:102,74:31:176:0.420:2	0/1:117,4:31:121:0.033:2	./.	0/1:49,101:32:150:0.673:2	./.	0/1:110,71:31:181:0.392:2
chr1	12921365	rs200771429	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,23:30:125:0.185:2	./.	./.	./.	./.	0/1:158,10:29:168:0.060:2	./.	./.
chr1	12921367	rs113192325	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:163,16:29:179:0.089:2	0/1:109,8:32:117:0.068:2	./.	0/1:97,30:31:127:0.236:2	./.	0/1:183,5:29:188:0.027:2	0/1:101,14:30:115:0.122:2	0/1:169,17:31:186:0.091:2	0/1:158,10:30:168:0.060:2	./.	0/1:175,5:33:180:0.028:2
chr1	12921382	rs200446855	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,23:32:128:0.180:2	./.	./.	./.	./.	0/1:138,10:31:148:0.068:2	./.	./.
chr1	12921386	rs146271489	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,56:31:180:0.311:2	./.
chr1	12921423	rs201959610	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,10:31:106:0.095:2	./.	./.	./.	./.	./.	./.	./.
chr1	12921443	rs201306561	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,10:32:93:0.108:2	./.	./.	./.	./.	./.	./.	./.
chr1	12921451	rs372024192	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,12:31:136:0.088:2	./.	./.
chr1	12921479	rs140567467	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,6:33:87:0.069:2	./.	./.	./.	./.	./.	./.	./.
chr1	12921485	rs200757322	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,11:32:141:0.078:2	./.	./.	./.	./.	./.
chr1	12921499	rs148455874	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:51,9:33:60:0.150:2	0/1:23,6:32:29:0.207:2	./.	0/1:76,8:32:84:0.095:2	./.	0/1:120,9:33:129:0.070:2	0/1:157,7:30:164:0.043:2	0/1:179,14:31:193:0.073:2	0/1:54,20:33:74:0.270:2	0/1:187,4:33:193:0.021:2	0/1:105,17:33:122:0.139:2
chr1	12921539	rs142594496	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,20:33:21:0.952:2	0/1:1,14:32:15:0.933:2	./.	0/1:104,5:32:109:0.046:2	0/1:110,13:32:123:0.106:2	0/1:116,14:29:130:0.108:2	0/1:192,5:33:198:0.025:2	./.	0/1:2,20:31:22:0.909:2	0/1:174,7:30:181:0.039:2	0/1:95,25:30:121:0.208:2
chr1	12921576	rs143879460	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:128,11:32:139:0.079:2	0/1:139,11:32:150:0.073:2	./.	./.	0/1:53,10:33:63:0.159:2	./.	./.
chr1	12921594	rs201429745	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,14:31:122:0.115:2	./.	./.	./.	./.	./.	./.
chr1	12921595	rs199647032	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,15:26:74:0.205:2	./.	./.
chr1	12921600	rs199504163	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,23:32:64:0.359:2	0/1:25,13:33:38:0.342:2	0/1:16,4:33:20:0.200:2	0/1:93,12:33:105:0.114:2	0/1:102,17:32:119:0.143:2	0/1:121,24:32:145:0.166:2	0/1:151,7:32:158:0.044:2	0/1:136,25:32:161:0.155:2	0/1:60,16:32:76:0.211:2	0/1:128,18:33:146:0.123:2	0/1:127,25:33:152:0.164:2
chr1	12921635	rs144099057	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,21:33:98:0.214:2	0/1:107,14:32:121:0.116:2	./.	./.	0/1:83,18:33:101:0.178:2	0/1:114,12:33:126:0.095:2	0/1:139,16:32:155:0.103:2
chr1	12942961	rs4625290	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,74:32:176:0.420:2	0/1:93,74:33:167:0.443:2	./.	./.	0/1:3,97:34:100:0.970:2	./.	./.
chr1	12942990	rs143934691	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,56:30:104:0.538:2	./.	./.	./.	./.	./.
chr1	12943038	rs3121081	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,16:32:59:0.271:2	0/1:65,19:31:84:0.226:2	./.	./.	0/1:0,19:33:19:1.00:2	./.	0/1:52,33:32:85:0.388:2
chr1	12943156	rs3121080	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,5:33:58:0.086:2	0/1:59,4:32:63:0.063:2	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.
chr1	12943200	rs3121079	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,4:32:34:0.118:2	0/1:44,7:30:51:0.137:2	./.	./.	0/1:0,5:30:5:1.00:2	./.	./.
chr1	12952796	rs199584852	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,8:31:103:0.078:2
chr1	12952966	rs144302450	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.	./.
chr1	12952968	rs199929997	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.
chr1	12953000	rs201066233	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,5:31:87:0.057:2	./.	./.	./.	./.	./.	./.	./.
chr1	12953018	rs199862473	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,8:28:74:0.108:2	./.	./.	./.	./.	./.	./.	./.
chr1	12953035	rs201885730	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,13:32:67:0.194:2	./.	./.	./.	./.	./.	./.	./.
chr1	12953103	rs200956937	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,15:31:57:0.268:2	./.	./.	./.	./.	0/1:10,8:32:18:0.444:2	./.	./.
chr1	12953118	rs201988291	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,14:25:54:0.259:2	./.	./.	./.	./.	0/1:7,9:29:16:0.563:2	./.	./.
chr1	12953160	rs202058855	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,7:32:32:0.219:2	./.	./.	./.	./.	0/1:1,9:34:10:0.900:2	./.	./.
chr1	12953268	rs200660038	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,35:34:49:0.714:2	./.	./.	0/1:14,8:33:22:0.364:2	0/1:10,12:33:22:0.545:2	0/1:0,19:34:19:1.00:2	./.	0/1:2,56:33:58:0.966:2
chr1	12953291	rs200747196	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,3:33:22:0.136:2	./.	./.	./.	./.	./.
chr1	12953303	rs201840380	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,32:33:58:0.552:2	./.	./.	0/1:10,9:31:19:0.474:2	0/1:9,14:32:23:0.609:2	0/1:1,19:32:20:0.950:2	./.	0/1:7,68:32:75:0.907:2
chr1	12954490	rs149281133	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,95:29:195:0.487:2	0/1:135,60:27:195:0.308:2	0/1:13,182:28:195:0.933:2	./.	0/1:100,96:28:196:0.490:2	./.	0/1:136,60:29:196:0.306:2	./.
chr1	12954670	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:171,17:33:188:0.090:2	./.	./.	0/1:167,13:33:180:0.072:2	./.	0/1:158,36:34:194:0.186:2	./.	./.
chr1	12954806	rs199739589	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,6:31:33:0.182:2	./.	./.	./.	./.	0/1:96,11:32:107:0.103:2	./.	./.
chr1	12954807	rs200921407	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,6:31:33:0.182:2	./.	./.	./.	./.	0/1:96,10:32:106:0.094:2	./.	./.
chr1	12954814	rs201689660	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,11:31:30:0.367:2	./.	./.	./.	./.	0/1:100,15:32:115:0.130:2	./.	./.
chr1	12954861	rs201870591	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:8,4:29:12:0.333:2	./.	./.	./.	0/1:99,5:29:104:0.048:2	./.	./.	./.	./.	./.	./.
chr1	12954870	rs199999065	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:10,4:29:14:0.286:2	./.	./.	./.	0/1:99,5:30:104:0.048:2	./.	./.	./.	./.	./.	./.
chr1	12954890	rs201859036	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,18:30:21:0.857:2	./.	./.	./.	0/1:14,3:32:17:0.176:2	0/1:87,24:32:111:0.216:2	./.	./.
chr1	12954921	rs199792484	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,12:32:81:0.148:2	./.	./.
chr1	12954924	rs201268878	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:32:8:0.750:2	./.	./.	./.	0/1:13,3:32:16:0.188:2	0/1:63,9:33:72:0.125:2	./.	./.
chr1	12954941	rs200767575	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,3:35:61:0.049:2	./.	./.
chr1	12954967	rs376279623	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:22:6:0.667:2	0/1:10,4:31:15:0.286:2	0/1:4,4:33:8:0.500:2	./.	./.	0/1:48,21:31:70:0.304:2
chr1	12954987	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	12977531	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,19:32:56:0.339:2	./.	./.
chr1	12977626	.	A	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:70,42:27:112:0.375:2	0/1:48,26:28:74:0.351:2	./.	0/1:89,47:28:136:0.346:2	0/1:120,30:29:150:0.200:2	0/1:102,67:29:169:0.396:2	0/1:97,68:29:166:0.412:2	0/1:113,57:28:171:0.335:2	./.	0/1:137,35:27:173:0.203:2	./.
chr1	12977793	rs200627015	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,9:30:47:0.191:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	12978266	rs199648834	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,6:32:40:0.150:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	12978532	rs201364169	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,14:30:77:0.182:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	12978577	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,34:30:196:0.173:2	./.	./.	./.	./.
chr1	12979729	rs146836223	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,166:32:187:0.888:2	0/1:14,90:32:104:0.865:2	./.	0/1:131,53:33:184:0.288:2	0/1:162,33:32:195:0.169:2	0/1:128,67:32:195:0.344:2	0/1:128,67:33:195:0.344:2	0/1:117,71:32:188:0.378:2	./.	0/1:156,38:33:194:0.196:2	./.
chr1	12979845	rs142026718	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,152:33:179:0.849:2	0/1:31,115:32:146:0.788:2	./.	0/1:126,61:34:187:0.326:2	0/1:148,48:33:196:0.245:2	0/1:100,97:33:197:0.492:2	0/1:122,75:33:197:0.381:2	0/1:104,91:33:195:0.467:2	./.	0/1:151,43:33:194:0.222:2	./.
chr1	12979987	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:32:158:0.025:2	./.	./.	./.	./.
chr1	12980074	rs139206769	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,7:30:37:0.189:2	0/1:187,6:28:193:0.031:2	./.	./.	./.	./.	0/1:166,11:28:181:0.062:2	./.
chr1	12980122	rs148616830	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:6,4:32:10:0.400:2	0/1:1,2:31:3:0.667:2	./.	0/1:3,5:34:8:0.625:2	./.	0/1:1,3:31:4:0.750:2	0/1:6,5:34:11:0.455:2	0/1:6,4:32:10:0.400:2	./.	./.	./.
chr1	12980127	rs142075338	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:2,3:33:5:0.600:2	./.	./.	./.	./.	./.	0/1:9,3:35:12:0.250:2	./.	./.	./.	./.
chr1	12980150	rs141480481	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,91:31:186:0.489:2
chr1	12980232	rs201674075	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,4:30:25:0.160:2	0/1:56,26:30:82:0.317:2	./.	0/1:51,40:30:91:0.440:2	0/1:65,31:31:96:0.323:2	0/1:64,48:30:112:0.429:2	0/1:121,23:32:144:0.160:2	0/1:124,14:32:139:0.101:2	0/1:113,18:31:132:0.137:2
chr1	13035545	.	G	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,3:32:23:0.130:2	./.	./.	0/1:15,3:33:18:0.167:2	0/1:13,5:32:18:0.278:2	./.	0/1:19,6:34:25:0.240:2	0/1:23,3:34:26:0.115:2	./.	./.	0/1:22,7:32:29:0.241:2
chr1	13035555	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:25,3:31:28:0.107:2	./.	./.	./.	0/1:14,4:32:18:0.222:2	./.	0/1:26,4:32:30:0.133:2	./.	./.	./.	0/1:25,3:31:28:0.107:2
chr1	13035557	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,4:31:18:0.222:2	./.	0/1:28,4:32:32:0.125:2	./.	./.	./.	0/1:25,3:31:28:0.107:2
chr1	13035627	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,5:24:51:0.098:2
chr1	13035630	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,5:31:51:0.098:2
chr1	13035669	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,18:30:109:0.165:2	./.	./.	./.	./.	0/1:64,25:31:89:0.281:2	0/1:62,11:30:73:0.151:2	./.
chr1	13035690	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:151,11:28:162:0.068:2	0/1:124,13:29:137:0.095:2	./.	./.	./.	./.	0/1:101,4:31:105:0.038:2	0/1:143,7:32:150:0.047:2
chr1	13036247	rs201369259	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,22:31:34:0.647:2	0/1:10,12:32:22:0.545:2	./.	0/1:44,13:30:57:0.228:2	0/1:35,15:30:50:0.300:2	0/1:19,8:31:27:0.296:2	0/1:33,10:31:43:0.233:2	0/1:46,20:30:66:0.303:2	0/1:4,16:32:20:0.800:2	0/1:35,18:30:53:0.340:2	0/1:47,31:30:78:0.397:2
chr1	13036294	rs200761485	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,6:31:102:0.059:2	./.
chr1	13036296	rs201492352	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,24:33:135:0.178:2	./.	./.	./.	./.	0/1:78,18:32:96:0.188:2	0/1:99,6:33:105:0.057:2	./.
chr1	13036309	rs200205121	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:142,31:32:173:0.179:2	./.	./.	./.	./.	0/1:101,30:32:131:0.229:2	./.	./.
chr1	13036330	rs200053605	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:117,67:30:185:0.364:2	0/1:87,65:31:152:0.428:2	0/1:17,13:31:30:0.433:2	0/1:125,70:30:195:0.359:2	0/1:125,56:31:182:0.309:2	0/1:121,68:30:189:0.360:2	0/1:111,76:32:187:0.406:2	0/1:120,76:31:196:0.388:2	0/1:86,99:31:185:0.535:2	0/1:69,121:31:190:0.637:2	0/1:136,60:32:196:0.306:2
chr1	13036447	rs199683676	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:96,100:32:196:0.510:2	0/1:79,113:32:192:0.589:2	0/1:50,38:32:88:0.432:2	0/1:96,99:32:195:0.508:2	0/1:94,102:31:196:0.520:2	0/1:109,88:31:197:0.447:2	0/1:88,108:32:196:0.551:2	0/1:92,104:32:196:0.531:2	0/1:51,141:33:192:0.734:2	0/1:51,143:32:194:0.737:2	0/1:89,107:32:196:0.546:2
chr1	13036506	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,9:32:196:0.046:2	./.	./.
chr1	13036538	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:33:197:0.025:2	./.	./.
chr1	13036587	rs77788641	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,184:33:190:0.968:2	0/1:14,163:32:177:0.921:2	0/1:57,85:32:142:0.599:2	0/1:87,111:33:198:0.561:2	0/1:86,113:33:199:0.568:2	0/1:5,185:32:190:0.974:2	0/1:64,134:33:198:0.677:2	0/1:65,129:33:194:0.665:2	0/1:4,181:34:185:0.978:2	0/1:73,122:33:196:0.626:2	0/1:64,126:34:190:0.663:2
chr1	13036654	rs201636235	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:147,51:32:198:0.258:2	./.	./.	./.	./.	0/1:109,84:33:193:0.435:2	0/1:161,35:33:196:0.179:2	./.
chr1	13036736	rs202011965	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:30:67:1.00:2	0/1:0,56:31:56:1.00:2	0/1:11,6:30:17:0.353:2	0/1:115,44:29:159:0.277:2	0/1:80,18:29:98:0.184:2	0/1:2,54:29:56:0.964:2	0/1:66,44:30:110:0.400:2	0/1:97,57:29:154:0.370:2	0/1:0,69:30:69:1.00:2	0/1:73,54:30:127:0.425:2	0/1:99,51:30:150:0.340:2
chr1	13037823	rs202065754	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:27:62:1.00:2	0/1:1,26:27:27:0.963:2	0/1:27,11:27:38:0.289:2	0/1:137,40:28:177:0.226:2	0/1:93,65:27:158:0.411:2	0/1:1,43:27:44:0.977:2	0/1:116,28:27:144:0.194:2	0/1:117,46:27:164:0.282:2	0/1:0,53:28:53:1.00:2	0/1:82,81:28:163:0.497:2	0/1:95,63:27:158:0.399:2
chr1	13037860	rs201365789	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:1,46:33:47:0.979:2	0/1:36,13:33:49:0.265:2	0/1:131,35:32:166:0.211:2	0/1:111,60:31:171:0.351:2	0/1:3,77:32:80:0.963:2	0/1:121,28:31:149:0.188:2	0/1:101,55:32:156:0.353:2	0/1:0,43:33:43:1.00:2	0/1:70,67:32:137:0.489:2	0/1:87,42:32:129:0.326:2
chr1	13037864	rs200307391	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:31:54:1.00:2	0/1:1,48:32:49:0.980:2	0/1:37,15:32:52:0.288:2	0/1:132,34:31:167:0.205:2	0/1:108,61:31:169:0.361:2	0/1:2,83:31:85:0.976:2	0/1:119,37:32:156:0.237:2	0/1:96,57:31:153:0.373:2	0/1:0,51:31:51:1.00:2	0/1:71,78:30:149:0.523:2	0/1:89,47:30:138:0.346:2
chr1	13037877	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,74:32:75:0.987:2	0/1:3,57:32:60:0.950:2	0/1:43,13:32:56:0.232:2	0/1:125,49:33:174:0.282:2	0/1:154,21:32:175:0.120:2	0/1:4,89:32:93:0.957:2	0/1:115,45:32:160:0.281:2	0/1:92,70:32:162:0.432:2	0/1:2,55:33:57:0.965:2	0/1:68,90:32:158:0.570:2	0/1:90,61:32:151:0.404:2
chr1	13037932	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:32:155:0.026:2	./.	./.
chr1	13038025	.	C	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,11:31:12:0.917:2	0/1:1,7:32:8:0.875:2	./.	./.	0/1:188,5:32:193:0.026:2	0/1:8,3:33:11:0.273:2	0/1:185,7:29:193:0.036:2	0/1:179,5:32:184:0.027:2	0/1:4,9:32:14:0.692:2	0/1:177,7:30:184:0.038:2	./.
chr1	13038028	.	G	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,7:29:9:0.778:2	0/1:3,5:25:8:0.625:2	./.	./.	./.	0/1:8,3:28:11:0.273:2	./.	./.	0/1:4,10:29:14:0.714:2	0/1:175,7:28:182:0.038:2	./.
chr1	13038064	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,66:29:68:0.985:2	0/1:1,50:29:51:0.980:2	0/1:52,7:31:59:0.119:2	0/1:164,27:31:191:0.141:2	0/1:154,34:30:188:0.181:2	0/1:4,78:30:82:0.951:2	0/1:159,35:31:194:0.180:2	0/1:163,31:30:194:0.160:2	0/1:4,85:30:89:0.955:2	0/1:138,52:30:190:0.274:2	0/1:169,28:29:197:0.142:2
chr1	13038090	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,5:31:172:0.029:2	./.	./.
chr1	13038119	rs202041730	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,150:32:155:0.968:2	0/1:1,85:32:86:0.988:2	0/1:51,21:32:72:0.292:2	0/1:162,34:33:196:0.173:2	0/1:123,72:32:196:0.369:2	0/1:10,177:32:187:0.947:2	0/1:119,81:32:200:0.405:2	0/1:129,68:33:197:0.345:2	0/1:9,178:33:187:0.952:2	0/1:97,98:33:195:0.503:2	0/1:133,55:32:188:0.293:2
chr1	13038201	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:31:49:1.00:2	0/1:1,35:31:36:0.972:2	0/1:34,6:30:40:0.150:2	0/1:181,11:31:192:0.057:2	0/1:168,25:30:193:0.130:2	0/1:3,65:30:68:0.956:2	0/1:161,28:31:189:0.148:2	0/1:137,37:31:174:0.213:2	0/1:2,64:31:66:0.970:2	0/1:135,50:31:185:0.270:2	0/1:146,31:30:177:0.175:2
chr1	13038202	rs201452092	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:1,35:31:36:0.972:2	0/1:34,6:31:40:0.150:2	0/1:179,11:31:190:0.058:2	0/1:167,25:29:193:0.130:2	0/1:3,65:31:68:0.956:2	0/1:163,28:31:191:0.147:2	0/1:135,39:31:175:0.224:2	0/1:2,64:32:66:0.970:2	0/1:137,50:31:187:0.267:2	0/1:144,31:31:175:0.177:2
chr1	13038221	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:32:70:1.00:2	0/1:1,62:32:63:0.984:2	0/1:34,10:32:44:0.227:2	0/1:164,31:32:195:0.159:2	0/1:148,43:31:191:0.225:2	0/1:2,118:31:121:0.983:2	0/1:152,42:31:195:0.216:2	0/1:132,60:31:192:0.313:2	0/1:1,106:32:107:0.991:2	0/1:113,77:33:190:0.405:2	0/1:126,55:32:181:0.304:2
chr1	13038327	rs199598633	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,106:32:109:0.981:2	0/1:0,95:32:95:1.00:2	0/1:4,19:32:23:0.826:2	0/1:150,35:31:185:0.189:2	0/1:63,97:31:160:0.606:2	0/1:1,117:31:118:0.992:2	0/1:82,102:31:184:0.554:2	0/1:76,103:31:179:0.575:2	0/1:78,60:32:139:0.435:2	0/1:100,80:32:180:0.444:2	0/1:65,101:32:167:0.608:2
chr1	13038350	rs200724140	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,35:31:150:0.233:2	./.
chr1	13052788	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,10:31:177:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	13052789	rs61780142	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,162:31:175:0.926:2	0/1:5,115:31:120:0.958:2	0/1:36,15:31:51:0.294:2	0/1:168,26:30:194:0.134:2	./.	0/1:5,165:30:170:0.971:2	0/1:152,41:31:193:0.212:2	0/1:75,113:31:188:0.601:2	0/1:103,83:31:186:0.446:2	0/1:101,83:31:184:0.451:2	0/1:66,118:31:184:0.641:2
chr1	13052793	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,11:33:178:0.062:2	0/1:120,5:31:125:0.040:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	13052801	rs200011492	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,11:29:179:0.061:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	13052871	rs79792138	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,114:31:118:0.966:2	0/1:1,76:32:77:0.987:2	0/1:20,3:33:23:0.130:2	0/1:143,27:31:170:0.159:2	./.	0/1:2,115:30:117:0.983:2	0/1:106,23:32:129:0.178:2	0/1:75,103:31:178:0.579:2	0/1:87,62:32:149:0.416:2	0/1:83,92:31:175:0.526:2	0/1:62,120:32:182:0.659:2
chr1	13052895	rs201989186	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,7:31:19:0.368:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	13052907	rs72474524	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,105:28:105:1.00:2	0/1:0,60:27:60:1.00:2	0/1:7,10:28:17:0.588:2	0/1:115,60:28:175:0.343:2	0/1:38,56:27:94:0.596:2	0/1:2,93:28:95:0.979:2	0/1:72,14:29:86:0.163:2	0/1:53,62:28:115:0.539:2	0/1:0,108:29:108:1.00:2	0/1:27,125:28:152:0.822:2	0/1:56,73:28:129:0.566:2
chr1	13052923	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:36:68:0.059:2	0/1:89,4:34:93:0.043:2	./.	./.	./.
chr1	13052929	rs183467185	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,3:35:86:0.035:2	./.	./.	./.
chr1	13183243	rs138897759	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,6:34:157:0.038:2	./.
chr1	13183248	rs141472183	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,6:31:148:0.041:2	./.
chr1	13183249	rs139566100	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,47:30:143:0.329:2	./.
chr1	13183422	rs28564063	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:176,20:32:196:0.102:2	./.	./.	0/1:151,42:32:193:0.218:2	./.	./.	./.	./.
chr1	13183439	rs28713604	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:109,76:30:185:0.411:2	0/1:79,64:29:143:0.448:2	0/1:4,27:30:32:0.871:2	0/1:0,184:30:184:1.00:2	0/1:46,145:29:191:0.759:2	0/1:95,99:29:194:0.510:2	0/1:51,139:30:191:0.732:2	0/1:36,150:30:186:0.806:2	0/1:59,134:31:193:0.694:2	0/1:0,181:30:181:1.00:2	0/1:45,138:30:184:0.754:2
chr1	13183472	rs201921464	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,43:33:164:0.262:2	./.	./.
chr1	13183492	rs199934329	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,16:31:141:0.113:2	./.	./.
chr1	13183511	rs72864546	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:107,23:33:130:0.177:2	0/1:79,19:32:98:0.194:2	0/1:24,4:33:28:0.143:2	0/1:84,22:32:106:0.208:2	0/1:102,16:33:118:0.136:2	0/1:107,15:33:122:0.123:2	0/1:128,7:33:135:0.052:2	0/1:119,17:31:136:0.125:2	0/1:131,8:33:139:0.058:2	0/1:109,21:32:130:0.162:2	0/1:105,26:30:131:0.198:2
chr1	13183528	rs76937665	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:104,4:34:108:0.037:2	0/1:80,5:33:85:0.059:2	./.	0/1:87,6:27:93:0.065:2	./.	./.	0/1:133,4:34:137:0.029:2	./.	./.	0/1:110,5:27:115:0.043:2	0/1:105,5:33:110:0.045:2
chr1	13183567	rs78160026	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:65,4:31:69:0.058:2	./.	0/1:85,8:31:93:0.086:2	0/1:102,4:32:106:0.038:2	./.	./.	./.	./.	0/1:121,6:32:127:0.047:2	0/1:101,6:32:107:0.056:2
chr1	13183573	rs76669210	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:60,4:32:65:0.063:2	./.	0/1:52,36:31:88:0.409:2	0/1:100,6:32:107:0.057:2	./.	./.	./.	0/1:73,30:31:103:0.291:2	0/1:123,8:33:131:0.061:2	0/1:103,6:31:109:0.055:2
chr1	13183578	rs115194400	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,18:34:98:0.184:2	./.	./.
chr1	13183615	rs200176197	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:28:8:0.375:2	./.	0/1:57,11:26:68:0.162:2	./.	./.	./.	./.	./.	./.
chr1	13183631	rs80009603	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,4:28:74:0.054:2	0/1:43,8:30:51:0.157:2	./.	./.	./.	./.	./.	./.
chr1	13183634	rs2982225	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,4:30:73:0.055:2	0/1:44,6:29:50:0.120:2	./.	./.	./.	./.	./.	./.
chr1	13183780	rs116484938	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,54:32:136:0.397:2	./.	./.
chr1	13183833	rs115597766	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:182,7:32:190:0.037:2	./.	./.	./.	./.	./.	./.	0/1:193,5:32:198:0.025:2	0/1:195,5:32:200:0.025:2	0/1:189,6:31:195:0.031:2	0/1:180,8:28:188:0.043:2
chr1	13183860	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:32:196:0.026:2	./.	./.
chr1	13183966	rs80025711	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:64,20:32:85:0.238:2	0/1:44,7:32:51:0.137:2	./.	0/1:39,40:31:79:0.506:2	0/1:36,28:31:64:0.438:2	0/1:58,34:31:92:0.370:2	0/1:37,35:31:72:0.486:2	0/1:51,46:32:97:0.474:2	0/1:82,40:33:122:0.328:2	0/1:33,48:32:81:0.593:2	0/1:64,36:32:100:0.360:2
chr1	13216793	rs202167593	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,81:33:180:0.450:2	./.	./.
chr1	13216975	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:55,5:32:60:0.083:2	./.	./.	0/1:64,7:33:72:0.099:2	./.	./.	./.	0/1:57,4:32:61:0.066:2	./.	0/1:56,4:32:60:0.067:2	./.
chr1	13216976	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:54,5:31:59:0.085:2	./.	./.	0/1:62,8:28:70:0.114:2	./.	./.	./.	0/1:57,4:30:61:0.066:2	./.	0/1:57,4:32:61:0.066:2	./.
chr1	13217056	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,3:32:46:0.065:2	./.	0/1:0,2:33:2:1.00:2	0/1:25,4:33:29:0.138:2	0/1:16,3:32:19:0.158:2	0/1:37,5:31:42:0.119:2	./.	./.	./.	0/1:29,7:32:36:0.194:2	0/1:30,5:34:35:0.143:2
chr1	13217070	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,4:32:24:0.167:2	./.	./.	./.	./.	./.	./.	0/1:30,4:31:34:0.118:2
chr1	13217088	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,5:34:23:0.217:2	./.	./.	./.	./.	0/1:16,4:33:20:0.200:2	./.	./.
chr1	13217174	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,8:32:30:0.267:2	./.	./.
chr1	13328864	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:32:59:0.068:2	./.	./.	./.	./.	./.	./.	./.	0/1:148,51:32:199:0.256:2	./.
chr1	13328887	rs200631669	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,147:32:147:1.00:2	0/1:4,67:32:71:0.944:2	0/1:16,23:31:39:0.590:2	0/1:155,39:32:194:0.201:2	0/1:87,110:31:197:0.558:2	0/1:3,149:31:152:0.980:2	0/1:79,118:31:197:0.599:2	0/1:106,92:31:198:0.465:2	0/1:109,68:32:177:0.384:2	0/1:110,84:31:194:0.433:2	0/1:79,113:31:192:0.589:2
chr1	13328993	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:32:86:1.00:2	0/1:1,34:32:35:0.971:2	0/1:36,13:31:49:0.265:2	0/1:171,22:31:193:0.114:2	0/1:152,33:31:185:0.178:2	0/1:4,94:31:98:0.959:2	0/1:148,45:31:193:0.233:2	0/1:141,43:30:184:0.234:2	0/1:2,72:32:74:0.973:2	0/1:119,60:32:179:0.335:2	0/1:129,56:31:185:0.303:2
chr1	13329012	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:31:65:1.00:2	0/1:0,18:31:18:1.00:2	0/1:40,9:28:49:0.184:2	0/1:178,10:31:188:0.053:2	0/1:155,23:31:178:0.129:2	0/1:4,63:31:67:0.940:2	0/1:156,34:31:190:0.179:2	0/1:162,31:31:193:0.161:2	0/1:2,51:32:53:0.962:2	0/1:141,34:31:175:0.194:2	0/1:136,35:29:171:0.205:2
chr1	13329013	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:29:65:1.00:2	0/1:0,18:30:18:1.00:2	0/1:39,9:29:48:0.188:2	0/1:178,10:30:188:0.053:2	0/1:156,23:30:179:0.128:2	0/1:5,62:30:67:0.925:2	0/1:156,34:30:190:0.179:2	0/1:162,31:30:193:0.161:2	0/1:2,51:31:53:0.962:2	0/1:141,34:29:175:0.194:2	0/1:136,34:30:172:0.200:2
chr1	13329095	.	C	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,133:33:137:0.971:2	0/1:4,84:32:88:0.955:2	0/1:30,18:32:48:0.375:2	0/1:159,38:33:197:0.193:2	0/1:123,73:32:196:0.372:2	0/1:6,185:32:191:0.969:2	0/1:136,62:32:198:0.313:2	0/1:146,49:31:195:0.251:2	0/1:3,169:33:172:0.983:2	0/1:120,76:33:196:0.388:2	0/1:138,57:32:195:0.292:2
chr1	13329150	rs202211137	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:29:61:1.00:2	0/1:0,46:29:46:1.00:2	0/1:37,4:30:41:0.098:2	0/1:173,23:30:196:0.117:2	0/1:164,32:29:196:0.163:2	0/1:3,97:29:100:0.970:2	0/1:163,34:29:197:0.173:2	0/1:167,29:29:196:0.148:2	0/1:1,79:30:80:0.988:2	0/1:150,41:30:191:0.215:2	0/1:153,35:29:188:0.186:2
chr1	13329186	.	C	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:23:3:1.00:2	0/1:0,3:31:4:1.00:2	./.	./.	./.	0/1:4,7:27:11:0.636:2	./.	./.	0/1:2,5:25:7:0.714:2	0/1:156,5:28:161:0.031:2	0/1:178,6:26:184:0.033:2
chr1	13329189	.	G	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:33:3:1.00:2	0/1:0,4:33:4:1.00:2	./.	./.	./.	0/1:3,7:31:10:0.700:2	0/1:187,5:31:192:0.026:2	./.	0/1:2,5:32:7:0.714:2	0/1:155,4:31:159:0.025:2	0/1:187,7:28:194:0.036:2
chr1	13329337	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:30:70:1.00:2	0/1:0,62:32:62:1.00:2	0/1:17,12:33:29:0.414:2	0/1:118,40:31:158:0.253:2	0/1:134,27:31:162:0.168:2	0/1:3,57:30:60:0.950:2	0/1:89,49:32:138:0.355:2	0/1:97,57:32:155:0.370:2	0/1:3,33:32:36:0.917:2	0/1:84,53:31:138:0.387:2	0/1:108,34:33:143:0.239:2
chr1	13329350	.	A	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:30:48:1.00:2	0/1:0,40:31:40:1.00:2	0/1:15,7:32:22:0.318:2	0/1:125,34:31:159:0.214:2	0/1:82,67:31:150:0.450:2	0/1:2,58:30:60:0.967:2	0/1:92,42:31:134:0.313:2	0/1:93,41:32:135:0.306:2	0/1:1,38:31:39:0.974:2	0/1:79,51:32:130:0.392:2	0/1:104,35:32:139:0.252:2
chr1	13329354	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:30:49:1.00:2	0/1:0,36:33:36:1.00:2	0/1:14,5:33:19:0.263:2	0/1:128,31:33:159:0.195:2	0/1:83,64:32:147:0.435:2	0/1:2,59:31:61:0.967:2	0/1:89,40:33:129:0.310:2	0/1:96,39:33:135:0.289:2	0/1:1,40:32:41:0.976:2	0/1:83,39:31:122:0.320:2	0/1:103,34:31:137:0.248:2
chr1	13329391	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:28:56:1.00:2	0/1:0,23:26:23:1.00:2	0/1:12,6:28:18:0.333:2	0/1:131,34:28:165:0.206:2	0/1:67,42:27:109:0.385:2	0/1:1,47:27:48:0.979:2	0/1:74,29:29:103:0.282:2	0/1:89,40:27:129:0.310:2	0/1:0,54:27:54:1.00:2	0/1:69,46:28:115:0.400:2	0/1:114,42:27:156:0.269:2
chr1	13330478	rs201817232	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:24:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	13330560	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,4:33:194:0.021:2	./.	./.	./.	./.	0/1:10,15:32:25:0.600:2	0/1:78,9:31:87:0.103:2	./.
chr1	13330606	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	0/1:3,3:29:6:0.500:2	./.
chr1	13330627	rs200533297	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,15:33:43:0.349:2	0/1:22,11:33:33:0.333:2	./.	0/1:185,11:33:196:0.056:2	0/1:25,13:30:38:0.342:2	0/1:36,22:32:58:0.379:2	0/1:28,13:33:41:0.317:2	0/1:42,15:32:57:0.263:2	0/1:20,22:33:42:0.524:2	0/1:17,30:32:47:0.638:2	0/1:38,30:32:68:0.441:2
chr1	13330653	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,13:30:110:0.118:2	./.	./.
chr1	13330676	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,33:31:182:0.181:2	./.	./.
chr1	13330708	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,29:32:190:0.153:2	./.	./.
chr1	13330767	.	G	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:114,77:32:191:0.403:2	0/1:134,62:32:196:0.316:2	0/1:53,23:31:76:0.303:2	0/1:125,75:32:200:0.375:2	0/1:120,77:32:197:0.391:2	0/1:118,80:32:198:0.404:2	0/1:100,85:32:186:0.459:2	0/1:126,69:32:195:0.354:2	0/1:77,119:33:196:0.607:2	0/1:53,131:32:184:0.712:2	0/1:119,77:32:197:0.393:2
chr1	13330819	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:176,4:32:180:0.022:2	./.	./.	./.	./.	./.	./.
chr1	13330884	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:99,39:32:138:0.283:2	0/1:86,38:31:124:0.306:2	0/1:13,7:30:20:0.350:2	0/1:101,43:31:144:0.299:2	0/1:93,34:32:127:0.268:2	0/1:78,50:30:128:0.391:2	0/1:64,29:31:93:0.312:2	0/1:97,36:31:133:0.271:2	0/1:59,39:31:98:0.398:2	0/1:33,61:31:94:0.649:2	0/1:102,61:31:163:0.374:2
chr1	13330905	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,11:32:108:0.102:2	./.	./.	./.	./.	0/1:63,10:32:73:0.137:2	./.	./.
chr1	13330918	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,7:30:88:0.080:2	./.	./.	./.	./.	0/1:49,8:33:57:0.140:2	0/1:34,7:33:41:0.171:2	./.
chr1	13330920	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,7:31:38:0.184:2	./.
chr1	13330967	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,4:30:27:0.154:2
chr1	13331524	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:124,10:29:134:0.075:2	./.	./.	./.	./.	./.	0/1:95,8:31:103:0.078:2	./.
chr1	13331545	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,14:32:89:0.157:2	./.	./.	./.	./.	0/1:49,11:32:60:0.183:2	0/1:57,10:30:67:0.149:2	./.
chr1	13331584	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,5:34:55:0.093:2
chr1	13331587	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,5:30:54:0.093:2
chr1	13331611	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,3:34:41:0.073:2
chr1	13331669	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,4:34:21:0.190:2	./.	0/1:29,3:34:32:0.094:2	./.	./.	0/1:24,3:31:27:0.111:2
chr1	13386983	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,3:30:22:0.136:2	0/1:117,66:30:183:0.361:2	./.	0/1:96,88:30:184:0.478:2	0/1:93,103:30:196:0.526:2	0/1:112,87:31:199:0.437:2	0/1:87,43:32:130:0.331:2	0/1:145,36:31:181:0.199:2	0/1:56,88:31:144:0.611:2
chr1	13387065	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,11:30:192:0.057:2
chr1	13387093	.	C	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:124,69:31:194:0.358:2	0/1:103,81:32:184:0.440:2	0/1:0,49:32:49:1.00:2	0/1:0,162:32:162:1.00:2	0/1:2,150:31:152:0.987:2	0/1:0,190:32:190:1.00:2	0/1:2,185:32:187:0.989:2	0/1:0,188:32:188:1.00:2	0/1:99,71:32:170:0.418:2	0/1:0,163:32:163:1.00:2	0/1:1,143:31:144:0.993:2
chr1	13387133	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:32:165:0.024:2	./.	./.
chr1	13387141	.	A	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,13:31:33:0.394:2	0/1:120,44:31:165:0.268:2	0/1:101,41:32:142:0.289:2	./.	./.	./.	./.	0/1:113,63:32:177:0.358:2	./.
chr1	13387222	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,6:35:161:0.037:2	./.	./.
chr1	13387370	.	A	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:142,28:32:170:0.165:2	0/1:73,24:32:97:0.247:2	./.	0/1:62,27:32:89:0.303:2	0/1:85,35:32:120:0.292:2	0/1:42,48:32:90:0.533:2	0/1:53,56:30:109:0.514:2	0/1:45,42:32:87:0.483:2	./.	0/1:57,19:33:76:0.250:2	./.
chr1	13387486	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:80,12:33:92:0.130:2	0/1:59,8:31:67:0.119:2	./.	0/1:11,14:31:25:0.560:2	0/1:20,6:31:26:0.231:2	0/1:17,17:31:34:0.500:2	0/1:24,7:32:31:0.226:2	0/1:22,13:32:35:0.371:2	./.	0/1:19,6:31:25:0.240:2	./.
chr1	13388638	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,38:29:192:0.199:2	./.	./.	./.	./.
chr1	13388683	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,15:32:65:0.231:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	13388949	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,10:31:26:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	13389422	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,19:30:61:0.311:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	13389589	.	T	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:83,73:27:156:0.468:2	0/1:48,66:27:114:0.579:2	./.	0/1:69,44:29:113:0.389:2	0/1:143,37:27:181:0.206:2	0/1:75,101:28:176:0.574:2	0/1:88,78:28:166:0.470:2	0/1:85,93:28:178:0.522:2	./.	0/1:102,50:28:152:0.329:2	./.
chr1	13389684	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,14:32:47:0.298:2	./.	./.
chr1	13448084	rs138924513	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:81,7:32:88:0.080:2	0/1:42,4:33:46:0.087:2	./.	./.	0/1:138,4:31:142:0.028:2	./.	./.	./.	0/1:58,4:30:62:0.065:2	0/1:100,11:34:111:0.099:2	0/1:105,7:31:112:0.063:2
chr1	13448110	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,6:27:190:0.032:2	./.	./.	./.
chr1	13448116	rs148992058	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:98,11:29:109:0.101:2	0/1:51,5:32:56:0.089:2	./.	0/1:134,6:30:140:0.043:2	0/1:183,6:31:189:0.032:2	./.	./.	./.	0/1:71,6:32:77:0.078:2	./.	0/1:131,7:32:138:0.051:2
chr1	13448120	.	A	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:113,4:32:117:0.034:2	0/1:53,4:33:57:0.070:2	0/1:13,3:33:16:0.188:2	./.	./.	0/1:157,4:34:161:0.025:2	./.	0/1:186,8:30:194:0.041:2	0/1:76,4:34:80:0.050:2	./.	0/1:135,4:34:139:0.029:2
chr1	13448180	rs199555791	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,5:31:22:0.227:2	0/1:150,15:32:165:0.091:2	0/1:142,13:31:155:0.084:2	./.	./.	./.	./.	0/1:116,22:31:138:0.159:2	./.
chr1	13448184	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,4:29:20:0.200:2	0/1:143,14:28:157:0.089:2	0/1:136,12:27:148:0.081:2	./.	./.	./.	./.	0/1:114,21:28:135:0.156:2	./.
chr1	13448199	rs143762964	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:111,16:31:127:0.126:2	0/1:45,14:32:59:0.237:2	0/1:16,5:32:21:0.238:2	0/1:132,37:30:169:0.219:2	0/1:118,28:30:146:0.192:2	0/1:136,22:31:158:0.139:2	0/1:147,21:30:168:0.125:2	0/1:149,24:30:173:0.139:2	0/1:87,30:32:117:0.256:2	0/1:94,48:30:142:0.338:2	0/1:116,26:30:142:0.183:2
chr1	13448283	rs80327699	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,183:33:188:0.973:2	0/1:1,160:32:161:0.994:2	0/1:0,47:32:47:1.00:2	0/1:6,186:33:192:0.969:2	0/1:3,191:33:194:0.985:2	0/1:2,187:33:189:0.989:2	0/1:7,181:33:188:0.963:2	0/1:6,188:32:194:0.969:2	0/1:3,183:34:186:0.984:2	0/1:2,187:33:189:0.989:2	0/1:2,179:33:181:0.989:2
chr1	13448303	rs75752352	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,66:32:196:0.338:2	./.	./.	./.	./.
chr1	13448311	rs200879272	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,10:32:191:0.052:2	./.	./.
chr1	13448317	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,7:34:193:0.036:2	./.	./.
chr1	13448351	rs71183793	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,132:30:176:0.750:2	0/1:44,121:29:165:0.733:2	0/1:6,44:30:50:0.880:2	0/1:44,139:29:183:0.760:2	0/1:65,129:29:194:0.665:2	0/1:51,130:30:181:0.718:2	0/1:110,87:30:197:0.442:2	0/1:62,130:29:192:0.677:2	0/1:36,144:31:180:0.800:2	0/1:29,163:30:192:0.849:2	0/1:52,140:29:192:0.729:2
chr1	13448421	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,4:32:56:0.071:2	./.	./.	./.	./.	./.	0/1:168,9:32:177:0.051:2	./.	./.
chr1	13448443	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,34:33:169:0.201:2	./.	./.
chr1	13448455	rs200145993	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,5:31:39:0.128:2	./.	./.	./.	./.	./.	0/1:138,24:31:162:0.148:2	./.	./.
chr1	13448475	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,5:32:187:0.027:2	./.
chr1	13448547	rs200801174	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:109,32:31:141:0.227:2	0/1:84,20:32:104:0.192:2	0/1:11,4:31:15:0.267:2	0/1:157,25:32:182:0.137:2	./.	0/1:119,30:31:149:0.201:2	0/1:107,25:31:132:0.189:2	0/1:140,34:31:174:0.195:2	0/1:104,36:31:140:0.257:2	0/1:99,62:30:161:0.385:2	0/1:130,37:31:167:0.222:2
chr1	13448548	rs201453721	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:108,32:30:140:0.229:2	0/1:84,20:30:104:0.192:2	0/1:11,4:30:15:0.267:2	0/1:157,25:31:182:0.137:2	./.	0/1:116,30:30:146:0.205:2	0/1:104,25:30:129:0.194:2	0/1:136,34:30:170:0.200:2	0/1:101,36:30:137:0.263:2	0/1:98,62:30:160:0.388:2	0/1:128,37:29:166:0.224:2
chr1	13448551	rs199771678	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:108,32:32:140:0.229:2	0/1:83,20:32:103:0.194:2	0/1:11,4:27:15:0.267:2	0/1:155,25:32:181:0.139:2	./.	0/1:113,30:31:143:0.210:2	0/1:101,25:31:126:0.198:2	0/1:139,34:31:173:0.197:2	0/1:102,36:32:138:0.261:2	0/1:100,63:31:163:0.387:2	0/1:126,38:31:164:0.232:2
chr1	13449633	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:112,82:30:194:0.423:2	0/1:77,44:29:121:0.364:2	0/1:18,9:31:27:0.333:2	0/1:116,64:30:180:0.356:2	0/1:106,45:30:151:0.298:2	0/1:99,92:30:191:0.482:2	0/1:118,78:30:196:0.398:2	0/1:106,90:30:196:0.459:2	0/1:63,116:31:179:0.648:2	0/1:105,86:31:192:0.450:2	0/1:122,72:30:194:0.371:2
chr1	13449656	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:149,21:31:170:0.124:2	0/1:100,39:31:139:0.281:2	./.	./.	./.	./.	./.	./.
chr1	13449659	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,17:33:164:0.104:2	./.	./.
chr1	13449689	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:99,72:28:171:0.421:2	0/1:88,50:29:138:0.362:2	0/1:15,11:30:26:0.423:2	0/1:117,48:29:165:0.291:2	0/1:88,46:28:134:0.343:2	0/1:101,71:29:172:0.413:2	0/1:105,53:29:158:0.335:2	0/1:103,81:30:184:0.440:2	0/1:68,84:30:152:0.553:2	0/1:95,73:28:168:0.435:2	0/1:127,57:29:184:0.310:2
chr1	13449692	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,18:30:160:0.113:2	./.	0/1:136,26:31:162:0.160:2	./.	./.
chr1	13449703	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,54:32:173:0.312:2	0/1:102,34:31:136:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	13449723	.	G	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:108,47:32:156:0.303:2	0/1:97,40:31:137:0.292:2	0/1:17,6:33:23:0.261:2	0/1:125,40:31:165:0.242:2	0/1:102,20:30:122:0.164:2	0/1:107,66:32:173:0.382:2	0/1:118,25:31:143:0.175:2	0/1:117,63:32:180:0.350:2	0/1:103,56:32:159:0.352:2	0/1:98,74:32:172:0.430:2	0/1:134,43:32:177:0.243:2
chr1	13449728	.	T	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:117,44:31:161:0.273:2	0/1:104,40:32:144:0.278:2	0/1:15,4:31:19:0.211:2	0/1:125,41:32:166:0.247:2	0/1:103,21:32:124:0.169:2	0/1:109,68:32:177:0.384:2	0/1:125,27:33:152:0.178:2	0/1:121,61:32:182:0.335:2	0/1:101,56:33:157:0.357:2	0/1:97,74:31:171:0.433:2	0/1:136,43:32:179:0.240:2
chr1	13449788	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:135,45:32:181:0.250:2	0/1:112,45:32:157:0.287:2	0/1:14,5:30:19:0.263:2	0/1:129,53:32:182:0.291:2	0/1:126,19:31:146:0.131:2	0/1:106,65:32:171:0.380:2	0/1:156,27:32:183:0.148:2	0/1:126,52:32:178:0.292:2	0/1:98,62:32:160:0.388:2	0/1:101,68:31:169:0.402:2	0/1:140,46:32:187:0.247:2
chr1	13449801	.	G	A,C	.	PASS	AC=5,1;AF=0.278,0.056;AN=18;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant10-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0/1:32:174:0.276:2	0/1:31:160:0.294:2	./.	./.	0/2:31:140:0.137:2	0/1:30:181:0.370:2	./.	0/1:31:185:0.299:2	./.	./.	0/1:31:190:0.258:2
chr1	13449832	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:126,64:28:190:0.337:2	0/1:94,53:29:147:0.361:2	0/1:19,3:30:22:0.136:2	0/1:157,41:30:198:0.207:2	./.	0/1:124,70:28:194:0.361:2	0/1:132,19:29:151:0.126:2	0/1:131,64:29:195:0.328:2	0/1:158,37:29:195:0.190:2	0/1:133,60:30:193:0.311:2	0/1:132,56:29:188:0.298:2
chr1	13449922	.	A	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:84,12:33:96:0.125:2	0/1:54,14:32:68:0.206:2	./.	0/1:79,13:32:93:0.141:2	0/1:40,10:31:51:0.200:2	0/1:63,13:30:76:0.171:2	0/1:47,3:33:50:0.060:2	0/1:70,7:33:77:0.091:2	0/1:43,26:33:69:0.377:2	0/1:58,21:33:79:0.266:2	0/1:93,18:33:111:0.162:2
chr1	13450014	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,34:29:100:0.340:2	0/1:26,15:29:41:0.366:2	0/1:5,4:30:9:0.444:2	0/1:46,26:30:72:0.361:2	0/1:27,26:30:53:0.491:2	0/1:60,26:29:86:0.302:2	0/1:37,30:30:67:0.448:2	0/1:56,9:25:66:0.138:2	0/1:62,44:30:106:0.415:2	0/1:48,50:30:98:0.510:2	0/1:49,48:29:97:0.495:2
chr1	13450097	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,4:31:27:0.148:2	./.	./.	./.	0/1:41,6:33:47:0.128:2	./.	./.
chr1	13450099	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,4:27:28:0.143:2	0/1:47,6:23:53:0.113:2	./.	./.	0/1:23,22:31:45:0.489:2	0/1:40,11:30:51:0.216:2	./.
chr1	13450105	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,4:32:39:0.103:2	./.	./.
chr1	13450634	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:190,5:30:195:0.026:2	./.	./.	./.	./.	./.	./.
chr1	13450657	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:179,7:32:186:0.038:2	./.	./.	./.	./.	0/1:170,5:33:175:0.029:2	./.	./.
chr1	13450660	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:177,6:31:183:0.033:2	./.	./.	./.	./.	0/1:159,5:31:164:0.030:2	./.	./.
chr1	13450679	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:177,9:31:186:0.048:2	./.	./.	./.	./.	0/1:167,9:32:176:0.051:2	./.	./.
chr1	13450683	.	G	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,72:32:173:0.416:2	0/1:61,53:32:114:0.465:2	0/1:22,4:32:26:0.154:2	0/1:156,30:33:186:0.161:2	0/1:144,49:32:194:0.254:2	0/1:102,82:32:184:0.446:2	0/1:135,64:32:199:0.322:2	0/1:106,89:32:195:0.456:2	0/1:137,39:34:177:0.222:2	0/1:89,91:32:180:0.506:2	0/1:97,69:32:166:0.416:2
chr1	13450755	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:159,6:32:166:0.036:2	./.	./.	./.	./.	0/1:151,6:32:157:0.038:2	./.	./.
chr1	13450756	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:159,6:31:165:0.036:2	./.	./.	./.	./.	0/1:151,6:32:157:0.038:2	./.	./.
chr1	13450767	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:141,5:31:146:0.034:2	./.	./.	./.	./.	0/1:134,6:31:140:0.043:2	./.	./.
chr1	13450772	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,22:29:115:0.191:2	./.	./.	./.	./.
chr1	13450798	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,35:29:89:0.393:2	0/1:29,33:29:62:0.532:2	0/1:9,4:29:13:0.308:2	0/1:63,56:29:119:0.471:2	0/1:57,41:28:98:0.418:2	0/1:63,44:29:107:0.411:2	0/1:33,51:29:84:0.607:2	0/1:52,54:28:106:0.509:2	0/1:20,73:29:93:0.785:2	0/1:42,57:28:99:0.576:2	0/1:70,64:29:134:0.478:2
chr1	13450835	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,25:33:86:0.291:2	0/1:32,27:31:59:0.458:2	./.	./.	./.	./.	./.	./.
chr1	13474785	.	G	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:173,20:30:193:0.104:2	0/1:146,17:32:163:0.104:2	./.	0/1:181,13:31:194:0.067:2	0/1:190,7:29:197:0.036:2	0/1:184,10:30:194:0.052:2	0/1:181,13:32:195:0.067:2	0/1:175,20:31:195:0.103:2	0/1:176,20:32:197:0.102:2	0/1:181,17:30:198:0.086:2	./.
chr1	13474788	rs200939483	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,83:31:195:0.426:2	./.	./.
chr1	13474849	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:130,58:32:188:0.309:2	0/1:130,60:32:190:0.316:2	0/1:80,37:31:117:0.316:2	0/1:136,59:32:195:0.303:2	0/1:130,62:31:192:0.323:2	0/1:126,64:31:190:0.337:2	0/1:139,57:32:196:0.291:2	0/1:128,65:32:193:0.337:2	0/1:122,68:33:190:0.358:2	0/1:121,68:32:189:0.360:2	0/1:146,42:32:189:0.223:2
chr1	13474934	rs201446830	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,38:31:167:0.229:2	./.	./.
chr1	13474951	rs201753501	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:155,36:33:191:0.188:2	0/1:156,38:32:194:0.196:2	0/1:92,28:32:120:0.233:2	0/1:175,19:33:194:0.098:2	0/1:184,14:32:198:0.071:2	0/1:166,31:33:197:0.157:2	0/1:179,16:33:195:0.082:2	0/1:173,25:33:198:0.126:2	0/1:94,90:34:184:0.489:2	0/1:156,38:33:194:0.196:2	0/1:166,26:32:193:0.135:2
chr1	13474974	rs201607561	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,73:33:183:0.399:2	./.	./.
chr1	13474980	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:171,24:30:195:0.123:2	0/1:178,17:31:196:0.087:2	0/1:107,15:29:122:0.123:2	0/1:181,12:31:193:0.062:2	0/1:191,6:30:197:0.030:2	0/1:174,18:29:192:0.094:2	0/1:189,7:31:196:0.036:2	0/1:182,14:30:196:0.071:2	0/1:169,14:32:183:0.077:2	0/1:181,15:31:196:0.077:2	0/1:181,14:31:195:0.072:2
chr1	13475186	rs201814272	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,84:30:194:0.433:2	./.	./.
chr1	13475211	.	A	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:160,4:33:164:0.024:2	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.	./.	./.	./.	0/1:163,4:33:167:0.024:2	0/1:168,5:32:173:0.029:2
chr1	13475218	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:152,5:32:157:0.032:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,5:30:160:0.031:2	0/1:171,5:30:176:0.028:2
chr1	13475254	rs200765914	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:147,12:32:159:0.075:2	0/1:98,4:31:102:0.039:2	./.	0/1:165,17:30:182:0.093:2	0/1:113,7:31:120:0.058:2	0/1:148,12:32:160:0.075:2	0/1:100,11:32:111:0.099:2	0/1:122,7:33:129:0.054:2	0/1:146,5:30:151:0.033:2	0/1:118,15:32:133:0.113:2	0/1:163,11:32:174:0.063:2
chr1	13476308	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,21:31:78:0.269:2	./.	./.
chr1	13476315	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,19:32:78:0.244:2	./.	./.
chr1	13476335	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,17:30:101:0.168:2	./.	./.
chr1	13476379	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,34:31:138:0.246:2	./.	./.
chr1	13476387	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,35:32:134:0.261:2	./.	./.
chr1	13476391	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,41:34:139:0.295:2	./.	./.
chr1	13476472	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,62:30:178:0.348:2	./.	./.
chr1	13476533	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,29:32:144:0.201:2	./.	./.
chr1	13476540	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,24:33:129:0.186:2	./.	./.
chr1	13476579	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,61:32:186:0.328:2	./.	./.
chr1	13476611	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,80:33:192:0.417:2	./.	./.
chr1	13476659	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:174,10:30:185:0.054:2	./.	./.	./.	0/1:190,6:31:196:0.031:2	0/1:185,9:30:194:0.046:2	0/1:177,9:30:186:0.048:2	0/1:182,11:31:193:0.057:2	0/1:185,9:32:196:0.046:2	./.	0/1:185,5:31:191:0.026:2
chr1	13476661	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:181,10:29:191:0.052:2	./.	./.	./.	0/1:187,8:31:195:0.041:2	0/1:186,8:31:194:0.041:2	0/1:179,10:29:189:0.053:2	0/1:181,11:31:192:0.057:2	0/1:179,10:33:189:0.053:2	./.	0/1:183,6:31:190:0.032:2
chr1	13476741	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,41:32:151:0.272:2	./.	./.
chr1	13476762	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,25:33:137:0.182:2	./.	./.	./.	./.	0/1:96,20:34:116:0.172:2	./.	./.
chr1	13476768	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:28:9:0.444:2	0/1:83,49:28:132:0.371:2	0/1:65,26:27:92:0.286:2	./.	./.	./.	./.	./.	./.
chr1	13476775	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,23:32:126:0.183:2	./.	./.	./.	./.	0/1:73,17:34:90:0.189:2	0/1:97,25:32:122:0.205:2	./.
chr1	13476777	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,25:31:118:0.212:2	./.
chr1	13477381	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,6:30:21:0.286:2	0/1:139,36:31:176:0.206:2	0/1:124,55:31:179:0.307:2	./.	./.	./.	./.	0/1:131,56:31:188:0.299:2	0/1:125,65:31:190:0.342:2
chr1	13477402	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,25:32:140:0.179:2	./.	./.	./.	./.	0/1:133,20:33:153:0.131:2	0/1:160,22:32:182:0.121:2	./.
chr1	13477410	.	C	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:106,51:32:157:0.325:2	0/1:55,26:32:81:0.321:2	0/1:7,9:32:16:0.563:2	0/1:80,41:33:121:0.339:2	0/1:99,61:32:160:0.381:2	0/1:98,57:33:156:0.368:2	0/1:93,50:32:143:0.350:2	0/1:102,56:32:158:0.354:2	0/1:95,47:32:142:0.331:2	0/1:92,82:32:174:0.471:2	0/1:88,68:32:156:0.436:2
chr1	13477433	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,37:32:129:0.287:2	./.	./.
chr1	13477503	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,8:32:59:0.136:2	./.	./.	./.	./.	./.
chr1	13495320	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,31:31:55:0.564:2	./.	./.	./.
chr1	13495325	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,9:30:71:0.129:2	./.	./.	./.	./.	./.	./.	./.
chr1	13496271	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:32:117:0.034:2	./.	./.	./.
chr1	13496277	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:32:113:0.035:2	./.	./.	./.
chr1	13496283	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:31:104:0.038:2	./.	./.	./.
chr1	13496361	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,5:33:130:0.038:2
chr1	13496383	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:32:137:0.029:2
chr1	13496429	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,63:32:146:0.432:2	./.	./.
chr1	13497572	rs199881782	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,3:30:20:0.150:2	0/1:86,32:28:118:0.271:2	0/1:82,11:28:93:0.118:2	./.	0/1:86,10:28:96:0.104:2	0/1:183,14:28:197:0.071:2	./.	0/1:113,37:28:150:0.247:2	0/1:114,26:28:140:0.186:2
chr1	13497584	rs201031594	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,3:32:21:0.143:2	0/1:97,33:31:130:0.254:2	0/1:92,11:31:103:0.107:2	./.	0/1:95,11:33:106:0.104:2	0/1:178,15:32:193:0.078:2	./.	0/1:129,37:31:166:0.223:2	0/1:134,24:32:158:0.152:2
chr1	13497591	rs201470154	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,13:30:78:0.167:2	./.	./.
chr1	13497592	rs199979987	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,12:30:78:0.154:2	./.	./.
chr1	13497626	rs200005698	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:150,19:31:169:0.112:2	./.	./.	0/1:122,9:28:131:0.069:2	0/1:122,5:28:128:0.039:2	./.	0/1:164,19:30:183:0.104:2	0/1:179,10:30:189:0.053:2
chr1	13497756	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,35:32:104:0.337:2	./.	./.
chr1	13497768	rs201993208	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,41:33:118:0.347:2	./.	./.
chr1	13497810	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,68:32:161:0.422:2	./.	./.	./.	./.
chr1	13523852	.	G	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:3,97:32:100:0.970:2	0/1:0,49:32:49:1.00:2	./.	0/1:67,57:33:124:0.460:2	./.	./.	0/1:63,50:32:113:0.442:2	0/1:74,55:33:129:0.426:2	0/1:79,39:33:118:0.331:2	./.	0/1:62,56:33:118:0.475:2
chr1	13526474	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,5:30:79:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr1	13526541	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,10:32:70:0.143:2	./.	./.	./.	./.	./.	./.	./.
chr1	13526552	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,9:32:78:0.115:2	./.	./.	./.	./.	./.	./.	./.
chr1	13526566	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,8:32:77:0.105:2	./.	./.	./.	./.	./.	./.	./.
chr1	13526598	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,8:32:94:0.085:2	./.	./.	./.	./.	0/1:107,4:32:111:0.036:2	./.	./.
chr1	13526617	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,8:32:109:0.073:2	./.	./.	./.	./.	0/1:132,4:33:136:0.029:2	./.	./.
chr1	13526664	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,6:31:135:0.044:2	./.	./.	./.	./.	./.	./.	./.
chr1	13526807	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,84:33:165:0.509:2	./.	./.
chr1	13607768	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,6:30:20:0.300:2	0/1:112,73:30:185:0.395:2	./.	0/1:112,84:30:196:0.429:2	0/1:128,71:31:199:0.357:2	0/1:106,91:31:197:0.462:2	0/1:85,56:31:141:0.397:2	0/1:143,45:32:188:0.239:2	0/1:57,83:30:140:0.593:2
chr1	13607850	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,5:33:182:0.027:2
chr1	13607878	.	C	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:117,78:32:195:0.400:2	0/1:88,84:32:172:0.488:2	0/1:0,41:31:41:1.00:2	0/1:0,169:31:169:1.00:2	0/1:10,141:31:151:0.934:2	0/1:1,183:31:184:0.995:2	0/1:0,190:32:190:1.00:2	0/1:0,192:32:192:1.00:2	0/1:95,75:33:170:0.441:2	0/1:1,172:32:173:0.994:2	0/1:8,168:32:176:0.955:2
chr1	13607926	.	A	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,12:31:36:0.333:2	0/1:130,29:32:160:0.182:2	0/1:118,44:31:162:0.272:2	./.	./.	./.	./.	0/1:134,50:32:184:0.272:2	./.
chr1	13608155	.	A	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:98,35:32:133:0.263:2	0/1:72,30:32:102:0.294:2	./.	0/1:39,29:32:68:0.426:2	0/1:66,23:32:89:0.258:2	0/1:51,42:32:93:0.452:2	0/1:48,55:32:103:0.534:2	0/1:41,49:32:90:0.544:2	./.	0/1:59,17:32:77:0.224:2	./.
chr1	13608202	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,3:33:6:0.500:2	./.	./.	./.	./.	./.	./.
chr1	13608271	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:74,6:32:80:0.075:2	0/1:67,7:32:74:0.095:2	./.	0/1:12,4:31:16:0.250:2	0/1:30,6:32:36:0.167:2	0/1:23,14:31:37:0.378:2	0/1:17,15:31:32:0.469:2	0/1:26,28:31:54:0.519:2	./.	0/1:14,3:33:17:0.176:2	./.
chr1	13609423	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,37:30:192:0.193:2	./.	./.	./.	./.
chr1	13609468	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,28:31:102:0.275:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	13609734	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,12:30:38:0.316:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	13610207	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,20:28:67:0.299:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	13610374	.	T	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:71,68:28:139:0.489:2	0/1:49,59:28:108:0.546:2	./.	0/1:90,49:29:141:0.353:2	0/1:123,29:29:152:0.191:2	0/1:93,82:28:176:0.469:2	0/1:78,86:29:164:0.524:2	0/1:85,94:28:179:0.525:2	./.	0/1:107,51:29:158:0.323:2	./.
chr1	13610469	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,27:31:69:0.391:2	./.	./.
chr1	13668939	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,13:33:131:0.099:2	./.
chr1	13668975	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,8:32:191:0.042:2	./.	./.	./.	./.	0/1:110,5:34:116:0.043:2
chr1	13669166	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,5:35:196:0.026:2	./.	./.
chr1	13669172	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,7:34:188:0.037:2	./.	./.
chr1	13669206	rs200459682	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:149,44:31:193:0.228:2	0/1:143,42:31:185:0.227:2	0/1:48,17:31:65:0.262:2	0/1:142,37:31:180:0.207:2	0/1:145,49:30:194:0.253:2	0/1:161,34:31:195:0.174:2	0/1:170,28:32:198:0.141:2	0/1:151,45:31:197:0.230:2	0/1:116,71:32:187:0.380:2	0/1:146,52:32:198:0.263:2	0/1:142,50:31:192:0.260:2
chr1	13669276	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,15:31:181:0.083:2	./.	./.
chr1	13669298	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,34:33:180:0.189:2	./.	./.
chr1	13669310	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,12:31:49:0.245:2	./.	./.	./.	./.	./.	0/1:162,21:31:183:0.115:2	./.	./.
chr1	13669330	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:147,7:33:154:0.045:2	./.	./.	./.	./.	0/1:169,12:31:181:0.066:2	./.
chr1	13669402	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:103,47:32:150:0.313:2	0/1:80,19:32:99:0.192:2	0/1:21,14:32:35:0.400:2	0/1:163,14:32:177:0.079:2	./.	0/1:131,41:30:172:0.238:2	0/1:98,18:31:116:0.155:2	0/1:122,34:32:156:0.218:2	0/1:111,32:31:143:0.224:2	0/1:104,51:31:155:0.329:2	0/1:130,30:31:160:0.188:2
chr1	13669403	.	G	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,47:30:148:0.318:2	0/1:78,19:31:97:0.196:2	0/1:20,14:30:34:0.412:2	0/1:160,14:30:174:0.080:2	./.	0/1:130,40:30:170:0.235:2	0/1:96,18:30:115:0.158:2	0/1:121,34:31:155:0.219:2	0/1:110,32:30:142:0.225:2	0/1:102,51:31:153:0.333:2	0/1:128,30:29:159:0.190:2
chr1	13669406	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:100,47:31:147:0.320:2	0/1:74,19:31:93:0.204:2	0/1:19,14:32:33:0.424:2	0/1:156,15:31:171:0.088:2	./.	0/1:129,40:30:169:0.237:2	0/1:99,18:32:117:0.154:2	0/1:122,34:32:156:0.218:2	0/1:106,32:31:138:0.232:2	0/1:103,51:32:154:0.331:2	0/1:129,30:32:159:0.189:2
chr1	13670488	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:111,80:30:191:0.419:2	0/1:70,39:30:109:0.358:2	0/1:10,13:30:23:0.565:2	0/1:105,78:30:183:0.426:2	0/1:100,35:30:135:0.259:2	0/1:99,93:29:192:0.484:2	0/1:114,82:30:196:0.418:2	0/1:103,89:29:192:0.464:2	0/1:60,118:30:178:0.663:2	0/1:97,96:30:193:0.497:2	0/1:118,71:31:189:0.376:2
chr1	13670511	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,28:30:176:0.159:2	0/1:114,30:31:144:0.208:2	./.	./.	./.	./.	./.	./.
chr1	13670514	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,30:32:159:0.189:2	./.	./.
chr1	13670544	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,75:29:176:0.426:2	0/1:87,50:29:137:0.365:2	0/1:14,12:30:26:0.462:2	0/1:121,48:30:169:0.284:2	0/1:116,37:30:153:0.242:2	0/1:117,68:29:185:0.368:2	0/1:119,42:29:161:0.261:2	0/1:105,71:30:176:0.403:2	0/1:56,77:30:133:0.579:2	0/1:81,83:29:164:0.506:2	0/1:112,74:28:186:0.398:2
chr1	13670547	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,15:30:163:0.092:2	./.	0/1:107,32:30:140:0.230:2	./.	./.
chr1	13670558	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,53:32:183:0.290:2	0/1:98,41:31:139:0.295:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	13670578	.	G	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:129,47:32:178:0.267:2	0/1:91,45:32:136:0.331:2	0/1:22,4:32:26:0.154:2	0/1:122,42:32:164:0.256:2	0/1:128,26:31:154:0.169:2	0/1:111,41:31:152:0.270:2	0/1:125,21:33:146:0.144:2	0/1:138,46:32:184:0.250:2	0/1:113,31:32:144:0.215:2	0/1:108,63:31:171:0.368:2	0/1:124,52:31:176:0.295:2
chr1	13670583	.	T	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:123,53:32:177:0.301:2	0/1:91,42:32:133:0.316:2	0/1:23,4:32:27:0.148:2	0/1:129,43:32:172:0.250:2	0/1:129,27:30:156:0.173:2	0/1:110,38:31:148:0.257:2	0/1:125,20:32:145:0.138:2	0/1:139,47:32:186:0.253:2	0/1:113,32:33:145:0.221:2	0/1:103,67:31:170:0.394:2	0/1:120,49:32:169:0.290:2
chr1	13670643	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:140,42:32:182:0.231:2	0/1:106,43:31:149:0.289:2	0/1:26,5:31:31:0.161:2	0/1:133,36:31:169:0.213:2	0/1:137,24:31:161:0.149:2	0/1:121,49:31:170:0.288:2	0/1:136,27:32:163:0.166:2	0/1:140,36:31:176:0.205:2	0/1:102,63:32:165:0.382:2	0/1:99,72:32:171:0.421:2	0/1:134,38:31:172:0.221:2
chr1	13670656	.	G	A,C	.	PASS	AC=5,1;AF=0.278,0.056;AN=18;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant10-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0/1:32:180:0.239:2	0/1:31:149:0.302:2	./.	./.	0/2:32:165:0.141:2	0/1:30:167:0.275:2	./.	0/1:31:185:0.196:2	./.	./.	0/1:32:173:0.273:2
chr1	13670687	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:116,67:29:184:0.366:2	0/1:101,64:28:165:0.388:2	0/1:29,8:30:37:0.216:2	0/1:149,26:29:175:0.149:2	./.	0/1:108,60:29:168:0.357:2	0/1:122,25:29:147:0.170:2	0/1:136,58:29:194:0.299:2	0/1:148,46:29:194:0.237:2	0/1:129,59:29:188:0.314:2	0/1:116,63:28:179:0.352:2
chr1	13670777	.	A	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:80,9:32:89:0.101:2	0/1:44,12:32:56:0.214:2	./.	0/1:66,10:32:76:0.132:2	0/1:36,10:33:46:0.217:2	0/1:66,21:33:87:0.241:2	0/1:28,8:33:36:0.222:2	0/1:55,16:32:71:0.225:2	0/1:32,28:34:60:0.467:2	0/1:67,18:31:85:0.212:2	0/1:80,19:31:99:0.192:2
chr1	13670869	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,24:29:73:0.329:2	0/1:40,11:29:51:0.216:2	0/1:3,3:30:6:0.500:2	0/1:52,26:28:78:0.333:2	0/1:37,15:30:52:0.288:2	0/1:46,31:29:77:0.403:2	0/1:26,20:29:46:0.435:2	0/1:55,19:29:74:0.257:2	0/1:40,28:30:68:0.412:2	0/1:44,44:28:88:0.500:2	0/1:64,27:30:91:0.297:2
chr1	13670952	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,3:32:29:0.103:2	./.	./.
chr1	13670954	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,7:31:29:0.241:2	0/1:48,12:30:60:0.200:2	./.
chr1	13670960	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,3:31:28:0.107:2	./.	./.
chr1	13670989	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:32:38:0.079:2	./.
chr1	13671512	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:181,9:32:190:0.047:2	./.	./.	./.	./.	./.	./.	./.
chr1	13671515	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:176,9:31:185:0.049:2	./.	./.	./.	./.	./.	./.	./.
chr1	13671534	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:173,10:32:183:0.055:2	./.	./.	./.	./.	0/1:172,9:32:181:0.050:2	./.	./.
chr1	13671538	.	G	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,79:32:162:0.488:2	0/1:60,57:32:117:0.487:2	0/1:23,7:33:30:0.233:2	0/1:153,31:33:184:0.168:2	0/1:137,44:32:181:0.243:2	0/1:96,95:32:191:0.497:2	0/1:145,51:33:196:0.260:2	0/1:92,103:31:195:0.528:2	0/1:127,51:34:178:0.287:2	0/1:86,102:32:188:0.543:2	0/1:104,75:33:179:0.419:2
chr1	13671627	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,33:30:121:0.273:2	./.	./.	./.	./.
chr1	13671653	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,55:28:115:0.478:2	0/1:37,31:27:68:0.456:2	0/1:3,3:29:6:0.500:2	0/1:51,33:29:84:0.393:2	0/1:54,32:28:86:0.372:2	0/1:57,46:28:103:0.447:2	0/1:41,57:27:98:0.582:2	0/1:59,57:28:116:0.491:2	0/1:32,65:30:97:0.670:2	0/1:52,74:29:126:0.587:2	0/1:83,37:29:120:0.308:2
chr1	13671690	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,7:33:59:0.121:2	0/1:29,18:33:48:0.383:2	./.	./.	./.	./.	./.	./.
chr1	13695621	.	G	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:173,20:31:194:0.104:2	0/1:138,10:32:148:0.068:2	0/1:30,7:31:37:0.189:2	0/1:179,18:31:197:0.091:2	0/1:186,14:30:200:0.070:2	0/1:187,11:30:199:0.056:2	0/1:187,12:32:199:0.060:2	0/1:177,20:31:197:0.102:2	0/1:191,6:27:197:0.030:2	0/1:176,22:31:198:0.111:2	0/1:182,10:30:192:0.052:2
chr1	13695624	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,111:32:194:0.572:2	./.	./.
chr1	13695685	rs201167498	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:106,78:32:184:0.424:2	0/1:118,71:32:189:0.376:2	0/1:68,44:32:112:0.393:2	0/1:118,75:32:193:0.389:2	0/1:131,61:32:192:0.318:2	0/1:124,68:32:192:0.354:2	0/1:143,55:32:198:0.278:2	0/1:127,64:32:191:0.335:2	0/1:116,74:33:190:0.389:2	0/1:99,88:32:187:0.471:2	0/1:108,82:32:190:0.432:2
chr1	13695770	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,10:32:180:0.056:2	./.	./.
chr1	13695787	rs202245256	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,124:33:188:0.660:2	0/1:69,116:33:185:0.627:2	0/1:42,63:33:105:0.600:2	0/1:65,123:33:188:0.654:2	0/1:62,128:33:190:0.674:2	0/1:57,137:33:194:0.706:2	0/1:76,118:33:194:0.608:2	0/1:62,131:33:193:0.679:2	0/1:28,149:34:178:0.842:2	0/1:44,151:33:195:0.774:2	0/1:71,115:33:186:0.618:2
chr1	13695810	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,5:32:190:0.026:2	./.	./.
chr1	13695816	rs148990958	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,149:32:188:0.793:2	0/1:37,139:32:176:0.790:2	0/1:28,77:31:105:0.733:2	0/1:29,162:31:191:0.848:2	0/1:29,162:31:191:0.848:2	0/1:25,169:31:194:0.871:2	0/1:34,158:32:192:0.823:2	0/1:35,156:31:191:0.817:2	0/1:18,170:32:188:0.904:2	0/1:19,171:31:190:0.900:2	0/1:36,156:32:192:0.813:2
chr1	13695974	rs142734546	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:111,50:31:161:0.311:2	0/1:92,59:32:151:0.391:2	0/1:29,23:31:52:0.442:2	0/1:113,69:31:183:0.379:2	0/1:121,64:31:185:0.346:2	0/1:127,59:31:186:0.317:2	0/1:99,60:30:159:0.377:2	0/1:121,48:31:169:0.284:2	0/1:113,68:32:181:0.376:2	0/1:103,66:32:171:0.391:2	0/1:125,53:32:180:0.298:2
chr1	13696022	rs201136502	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:144,16:28:160:0.100:2	0/1:138,14:31:152:0.092:2	0/1:23,3:32:26:0.115:2	0/1:160,13:32:174:0.075:2	0/1:161,17:30:178:0.096:2	0/1:163,10:31:173:0.058:2	0/1:161,18:31:179:0.101:2	0/1:168,8:31:176:0.045:2	0/1:84,66:31:150:0.440:2	0/1:141,14:32:156:0.090:2	0/1:142,24:30:166:0.145:2
chr1	13696029	rs200753201	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:139,12:31:151:0.079:2	0/1:140,12:32:152:0.079:2	./.	0/1:156,10:32:166:0.060:2	0/1:173,8:30:181:0.044:2	0/1:164,7:31:171:0.041:2	0/1:165,12:30:177:0.068:2	0/1:166,7:32:173:0.040:2	0/1:151,4:34:155:0.026:2	0/1:133,11:30:145:0.076:2	0/1:144,19:29:163:0.117:2
chr1	13696047	rs199733857	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:135,9:29:145:0.063:2	./.	./.	0/1:159,4:32:163:0.025:2	0/1:155,8:31:163:0.049:2	0/1:166,4:32:171:0.024:2	./.	./.	./.	0/1:143,7:29:150:0.047:2	0/1:144,6:28:150:0.040:2
chr1	13696054	rs200378484	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:145,8:30:154:0.052:2	./.	./.	0/1:167,4:32:171:0.023:2	0/1:150,5:30:155:0.032:2	./.	./.	./.	0/1:170,5:32:175:0.029:2	0/1:154,8:30:163:0.049:2	0/1:147,8:27:155:0.052:2
chr1	13696090	rs201393220	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:140,19:33:159:0.119:2	0/1:114,4:33:118:0.034:2	0/1:16,3:32:19:0.158:2	0/1:141,10:33:151:0.066:2	0/1:102,9:33:111:0.081:2	0/1:150,14:32:164:0.085:2	0/1:129,5:32:134:0.037:2	0/1:122,5:31:127:0.039:2	0/1:155,16:32:171:0.094:2	0/1:114,13:33:127:0.102:2	0/1:141,11:30:152:0.072:2
chr1	13697144	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,24:32:70:0.343:2	./.	./.
chr1	13697151	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,24:32:78:0.308:2	./.	./.
chr1	13697171	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,21:30:87:0.244:2	./.	./.
chr1	13697215	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,30:31:132:0.227:2	./.	./.
chr1	13697223	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,32:32:132:0.242:2	./.	./.
chr1	13697227	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,39:33:136:0.287:2	./.	./.
chr1	13697308	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,79:30:184:0.429:2	./.	./.
chr1	13697369	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,49:31:172:0.285:2	./.	./.
chr1	13697376	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,43:32:164:0.262:2	./.	./.
chr1	13697415	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,53:31:193:0.275:2	./.	./.
chr1	13697447	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	0/1:131,64:33:195:0.328:2	./.	./.
chr1	13697495	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:176,12:31:188:0.064:2	0/1:175,7:31:182:0.038:2	./.	0/1:183,8:32:191:0.042:2	./.	0/1:193,7:28:200:0.035:2	./.	./.	0/1:188,6:29:194:0.031:2	0/1:180,12:30:193:0.063:2	0/1:176,10:32:186:0.054:2
chr1	13697497	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:175,13:32:188:0.069:2	0/1:175,7:31:182:0.038:2	./.	0/1:183,8:32:191:0.042:2	./.	0/1:193,7:29:200:0.035:2	./.	0/1:193,4:32:197:0.020:2	0/1:189,6:32:195:0.031:2	0/1:177,12:29:190:0.063:2	0/1:180,10:32:190:0.053:2
chr1	13697577	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,51:33:157:0.325:2	./.	./.
chr1	13697598	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,27:32:120:0.225:2	./.	./.	./.	./.	0/1:106,23:34:129:0.178:2	./.	./.
chr1	13697604	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:28:7:0.429:2	0/1:75,40:28:115:0.348:2	0/1:64,27:27:91:0.297:2	./.	./.	./.	./.	./.	./.
chr1	13697611	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,23:32:107:0.215:2	./.	./.	./.	./.	0/1:90,20:34:110:0.182:2	0/1:100,31:33:131:0.237:2	./.
chr1	13697613	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,31:32:129:0.240:2	./.
chr1	13698217	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,6:31:18:0.333:2	0/1:130,56:31:186:0.301:2	0/1:128,49:31:177:0.277:2	./.	./.	./.	./.	0/1:140,49:31:189:0.259:2	0/1:120,48:31:168:0.286:2
chr1	13698238	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:132,33:31:165:0.200:2	./.	./.	./.	./.	0/1:134,33:33:167:0.198:2	0/1:156,25:32:181:0.138:2	./.
chr1	13698246	.	C	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:86,48:32:134:0.358:2	0/1:61,33:32:94:0.351:2	0/1:9,5:32:14:0.357:2	0/1:88,66:33:154:0.429:2	0/1:99,61:32:160:0.381:2	0/1:93,58:32:151:0.384:2	0/1:71,74:33:145:0.510:2	0/1:110,54:32:164:0.329:2	0/1:104,60:34:164:0.366:2	0/1:96,77:32:173:0.445:2	0/1:93,49:32:142:0.345:2
chr1	13698269	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,39:32:161:0.242:2	./.	./.
chr1	13698339	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,11:31:63:0.175:2	./.	./.	./.	./.	./.
chr1	13716154	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,28:31:53:0.528:2	./.	./.	./.
chr1	13716159	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,6:31:66:0.091:2	./.	./.	./.	./.	0/1:41,6:32:47:0.128:2	./.	./.
chr1	13716842	rs200830320	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,36:32:100:0.360:2	./.	./.
chr1	13716855	rs201841215	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,45:33:122:0.369:2	./.	./.
chr1	13717105	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,5:32:50:0.100:2	./.	./.	0/1:99,6:34:105:0.057:2	./.	0/1:100,4:33:104:0.038:2	./.
chr1	13717111	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,5:32:51:0.098:2	./.	./.	0/1:95,4:32:99:0.040:2	./.	0/1:101,4:33:105:0.038:2	./.
chr1	13717117	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:31:98:0.041:2	./.	0/1:100,4:32:104:0.038:2	./.
chr1	13717120	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,10:30:154:0.065:2	./.	./.
chr1	13717195	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:32:88:0.045:2	./.	./.	./.	./.	./.
chr1	13717217	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:31:119:0.034:2	./.	./.	./.	./.	./.
chr1	13717263	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,50:32:104:0.485:2	./.	./.
chr1	13718418	rs201071276	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:32:195:0.026:2	./.	./.	./.
chr1	13718425	rs201387011	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,9:33:186:0.048:2	./.	./.
chr1	13718426	rs200149212	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,9:32:181:0.050:2	./.	./.
chr1	13718460	rs200509275	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:157,9:30:166:0.054:2	./.	./.	./.	0/1:115,8:30:123:0.065:2	./.	./.	./.
chr1	13718539	rs200523455	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,19:27:20:0.950:2	0/1:5,9:29:14:0.643:2	./.	./.	0/1:12,7:29:19:0.368:2	0/1:5,12:25:17:0.706:2	0/1:169,8:29:177:0.045:2	./.	./.	0/1:12,13:28:25:0.520:2	0/1:189,7:28:196:0.036:2
chr1	13718590	rs199666818	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,69:32:191:0.361:2	0/1:83,4:30:87:0.046:2	./.
chr1	13718595	rs200660838	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,5:31:90:0.056:2	./.
chr1	13718602	rs372895950	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,72:32:191:0.377:2	./.	./.
chr1	13718644	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,82:31:135:0.607:2	./.	./.	./.	./.
chr1	13744712	rs199886862	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,92:32:93:0.989:2	0/1:0,36:32:36:1.00:2	./.	0/1:57,54:32:111:0.486:2	./.	./.	0/1:79,60:32:139:0.432:2	0/1:68,48:32:116:0.414:2	0/1:58,62:33:120:0.517:2	./.	0/1:65,53:32:118:0.449:2
chr1	13747401	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,4:29:61:0.066:2	./.	./.	./.	./.	./.	./.	./.
chr1	13747412	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.	./.	./.	./.
chr1	13747458	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,5:32:100:0.050:2	./.	./.	./.	./.	./.	./.	./.
chr1	13747477	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,5:31:119:0.042:2	./.	./.	./.	./.	./.	./.	./.
chr1	13747667	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,89:33:155:0.574:2	./.	./.
chr1	13802325	rs3013105	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:33:5:0.600:2	0/1:32,33:32:65:0.508:2	./.	0/1:27,22:31:49:0.449:2	0/1:48,44:33:92:0.478:2	0/1:3,74:31:77:0.961:2	./.	./.	0/1:0,56:32:56:1.00:2
chr1	13802437	rs3013106	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,59:32:144:0.410:2	./.	0/1:103,89:32:192:0.464:2	0/1:180,4:34:184:0.022:2	0/1:93,80:33:173:0.462:2	./.	./.	0/1:85,76:33:161:0.472:2
chr1	13910417	rs355025	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,25:32:26:0.962:2	0/1:0,14:31:14:1.00:2	./.	0/1:9,11:31:20:0.550:2	./.	0/1:0,37:31:37:1.00:2	./.	0/1:13,9:31:22:0.409:2	0/1:8,10:32:18:0.556:2	0/1:14,8:30:22:0.364:2	0/1:0,18:32:18:1.00:2
chr1	13940864	rs2486188	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,148:32:148:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,174:33:174:1.00:2	0/1:0,183:32:184:1.00:2	0/1:0,167:32:167:1.00:2	0/1:0,178:32:178:1.00:2	0/1:0,171:32:171:1.00:2	0/1:0,174:33:175:1.00:2	0/1:3,170:32:173:0.983:2	0/1:0,154:32:154:1.00:2
chr1	14075880	rs75417771	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,40:31:65:0.615:2	./.	./.	./.	./.
chr1	14105139	rs2076324	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,16:33:40:0.400:2	0/1:16,5:31:21:0.238:2	./.	./.	0/1:17,17:32:34:0.500:2	0/1:32,14:30:46:0.304:2	./.	./.	./.	0/1:0,29:32:29:1.00:2	0/1:1,37:32:38:0.974:2
chr1	14105298	rs1203678	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:44,39:32:83:0.470:2	0/1:26,23:32:49:0.469:2	0/1:6,6:32:12:0.500:2	./.	0/1:40,31:30:71:0.437:2	0/1:36,35:31:71:0.493:2	./.	./.	./.	0/1:0,45:33:45:1.00:2	0/1:0,108:32:108:1.00:2
chr1	14107360	rs41269807	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,10:27:16:0.625:2	./.	./.	0/1:49,24:27:73:0.329:2	./.	./.	./.	./.	./.
chr1	14107946	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:32:36:0.111:2	./.	./.	./.
chr1	14109114	rs1203651	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:21,20:30:41:0.488:2	0/1:4,4:26:8:0.500:2	0/1:3,5:32:8:0.625:2	./.	0/1:17,21:31:38:0.553:2	0/1:8,18:31:27:0.692:2	./.	./.	./.	0/1:0,38:30:38:1.00:2	0/1:0,47:30:47:1.00:2
chr1	14143003	rs1046331	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,21:30:21:1.00:2	0/1:0,5:30:5:1.00:2	0/1:32,11:30:43:0.256:2	0/1:0,48:29:48:1.00:2	0/1:0,56:28:56:1.00:2	0/1:47,20:31:67:0.299:2	0/1:0,53:29:53:1.00:2	0/1:31,18:31:49:0.367:2	0/1:19,24:29:43:0.558:2	0/1:0,46:29:46:1.00:2
chr1	14149622	rs2697968	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,29:32:83:0.349:2	0/1:23,21:30:44:0.477:2	0/1:0,6:30:6:1.00:2	0/1:74,73:31:147:0.497:2	0/1:1,72:31:73:0.986:2	0/1:3,100:30:103:0.971:2	0/1:46,53:30:99:0.535:2	0/1:1,100:31:101:0.990:2	0/1:57,41:31:98:0.418:2	0/1:0,62:31:62:1.00:2	0/1:2,105:31:107:0.981:2
chr1	14220186	rs1358577	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,12:33:21:0.571:2	./.	0/1:75,84:32:159:0.528:2	./.	0/1:106,90:31:196:0.459:2	0/1:2,168:32:170:0.988:2	0/1:75,83:33:158:0.525:2	./.	./.
chr1	14507057	rs10928050	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,18:32:34:0.529:2	./.	./.	0/1:93,79:32:172:0.459:2	0/1:73,61:33:134:0.455:2	0/1:0,158:32:158:1.00:2	./.	0/1:81,90:32:171:0.526:2	./.
chr1	15386680	rs79034042	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:40,6:32:46:0.130:2	./.	./.	0/1:56,5:27:61:0.082:2	0/1:51,9:21:60:0.150:2	0/1:65,6:25:71:0.085:2	0/1:48,8:23:56:0.143:2	0/1:55,6:26:61:0.098:2	./.	./.	./.
chr1	15390100	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,4:32:84:0.048:2	./.	./.	./.	./.	./.	./.	./.
chr1	15429956	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:32:58:0.069:2	./.	./.	./.	./.	./.
chr1	15438990	rs10803354	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,17:30:17:1.00:2	0/1:106,67:31:173:0.387:2	0/1:84,79:30:163:0.485:2	./.	./.	0/1:0,189:31:189:1.00:2	0/1:78,106:32:184:0.576:2	0/1:62,97:30:159:0.610:2	0/1:85,92:31:177:0.520:2
chr1	15441029	rs34135602	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,79:30:158:0.500:2	./.	./.
chr1	15495110	rs78615461	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,86:33:162:0.534:2	0/1:42,42:32:84:0.500:2	./.	./.	./.	0/1:111,77:32:188:0.410:2	0/1:115,81:33:196:0.413:2	./.	./.	./.	./.
chr1	15497727	rs6429722	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:32:60:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,76:32:77:1.00:2	0/1:42,31:32:73:0.425:2	0/1:1,84:32:85:0.988:2	0/1:0,73:32:73:1.00:2	0/1:0,103:31:103:1.00:2	0/1:0,104:33:104:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,90:32:90:1.00:2
chr1	15541607	rs3820065	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,11:29:29:0.379:2	./.	./.	./.	./.	./.	./.	./.
chr1	15546077	rs3753313	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,31:30:54:0.574:2	0/1:15,14:30:29:0.483:2	./.	0/1:17,18:32:35:0.514:2	0/1:14,26:32:40:0.650:2	0/1:2,36:32:38:0.947:2	./.	0/1:0,58:31:58:1.00:2
chr1	15599025	rs75432354	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,23:30:53:0.434:2	./.	./.	./.	./.	0/1:1,62:32:63:0.984:2
chr1	15616018	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,77:30:131:0.588:2	./.	./.	./.	./.	./.	./.
chr1	15616139	rs486557	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:25,23:30:48:0.479:2	0/1:10,10:32:20:0.500:2	0/1:5,4:30:9:0.444:2	./.	./.	0/1:23,40:30:63:0.635:2	0/1:0,33:30:33:1.00:2	./.	0/1:0,59:30:59:1.00:2	./.	./.
chr1	15653563	rs3765357	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,68:31:155:0.439:2	0/1:44,39:32:83:0.470:2	0/1:20,6:30:26:0.231:2	0/1:106,80:31:186:0.430:2	0/1:109,85:30:194:0.438:2	./.	./.	0/1:102,88:31:190:0.463:2	./.	0/1:97,67:31:164:0.409:2	0/1:97,57:31:154:0.370:2
chr1	15668276	rs763821	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,56:32:101:0.554:2	0/1:30,26:32:56:0.464:2	0/1:0,9:32:9:1.00:2	0/1:57,46:32:103:0.447:2	0/1:47,27:32:74:0.365:2	./.	./.	0/1:74,64:32:139:0.464:2	./.	0/1:61,34:32:95:0.358:2	0/1:69,59:32:128:0.461:2
chr1	15687059	rs4661330	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,35:33:67:0.522:2	./.	./.	0/1:29,25:33:54:0.463:2	./.	./.	0/1:22,25:33:47:0.532:2	./.
chr1	15702130	rs17368978	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,9:33:19:0.474:2
chr1	15708540	rs1010294	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,87:28:194:0.448:2	0/1:98,97:30:195:0.497:2	./.	0/1:103,87:28:190:0.458:2
chr1	15723843	rs2294490	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,61:31:61:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,5:31:5:1.00:2	./.	0/1:2,34:30:36:0.944:2	0/1:22,30:31:52:0.577:2	0/1:24,14:31:38:0.368:2	0/1:33,31:31:64:0.484:2	./.	0/1:1,49:31:50:0.980:2	./.
chr1	15754484	rs2473356	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,18:32:33:0.545:2	0/1:10,6:32:16:0.375:2	0/1:0,4:34:4:1.00:2	0/1:18,35:33:53:0.660:2	0/1:0,27:31:27:1.00:2	0/1:0,37:31:37:1.00:2	0/1:1,17:31:18:0.944:2	0/1:22,15:31:37:0.405:2	0/1:0,33:32:33:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,23:32:23:1.00:2
chr1	15767036	rs497078	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,92:31:187:0.492:2	./.	./.	0/1:58,45:32:103:0.437:2	./.
chr1	15768997	rs41307798	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,28:33:65:0.431:2	./.	./.
chr1	15783222	rs2303195	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,44:31:92:0.478:2	./.	./.	./.	./.
chr1	15789297	rs3815787	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,12:31:24:0.500:2	0/1:102,87:30:189:0.460:2	./.	0/1:79,74:31:153:0.484:2	0/1:104,50:30:154:0.325:2	0/1:101,87:30:189:0.463:2	0/1:101,87:31:188:0.463:2	./.	0/1:63,69:30:132:0.523:2
chr1	15789998	rs201775179	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:92,8:33:100:0.080:2	0/1:38,4:32:42:0.095:2	./.	0/1:100,10:31:110:0.091:2	0/1:121,8:30:129:0.062:2	0/1:109,12:31:121:0.099:2	./.	./.	./.	0/1:71,9:30:80:0.113:2	./.
chr1	15790013	rs3181471	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,36:30:83:0.434:2	./.	./.	./.	./.	./.	./.	./.
chr1	15793913	rs1042010	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,18:31:38:0.474:2	0/1:19,32:31:51:0.627:2	0/1:18,10:32:28:0.357:2	./.	0/1:19,16:31:35:0.457:2
chr1	15802996	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:32:125:0.032:2	./.	./.	./.
chr1	15802999	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:32:125:0.032:2	./.	./.	./.
chr1	15807620	rs200158570	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:50,3:33:53:0.057:2	./.	0/1:117,4:31:121:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr1	15808198	rs7520335	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:74,51:33:125:0.408:2	0/1:41,37:32:78:0.474:2	./.	0/1:80,68:32:148:0.459:2	0/1:99,48:33:147:0.327:2	0/1:61,56:32:117:0.479:2	./.	./.	./.	0/1:73,62:34:135:0.459:2	./.
chr1	15808767	rs3820071	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,32:32:52:0.615:2	0/1:17,9:32:26:0.346:2	./.	0/1:24,24:32:48:0.500:2	0/1:22,22:32:44:0.500:2	0/1:28,31:31:59:0.525:2	./.	./.	./.	0/1:24,45:32:69:0.652:2	./.
chr1	15808872	rs3766160	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,58:31:109:0.532:2	0/1:34,29:32:63:0.460:2	./.	0/1:72,68:30:140:0.486:2	0/1:51,55:31:106:0.519:2	0/1:98,81:31:180:0.453:2	./.	./.	./.	0/1:57,72:31:129:0.558:2	./.
chr1	15809876	rs10927792	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:53,19:33:72:0.264:2	0/1:17,12:33:29:0.414:2	./.	0/1:55,30:32:85:0.353:2	0/1:71,55:32:126:0.437:2	0/1:68,39:32:107:0.364:2	./.	./.	./.	0/1:38,38:32:76:0.500:2	./.
chr1	15809891	rs200410579	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,9:29:73:0.123:2	./.	./.	./.	./.	./.	./.	./.
chr1	15812432	rs6429745	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:29:69:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,91:29:91:1.00:2	0/1:0,81:28:81:1.00:2	0/1:0,97:29:97:1.00:2	0/1:0,114:29:114:1.00:2	0/1:0,134:29:134:1.00:2	0/1:0,105:30:106:1.00:2	0/1:0,85:29:85:1.00:2	0/1:0,64:28:64:1.00:2
chr1	15821834	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,6:33:168:0.036:2	./.	./.	./.
chr1	15832543	rs1052576	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,51:28:113:0.451:2	0/1:44,38:29:82:0.463:2	0/1:9,16:29:25:0.640:2	0/1:75,88:29:163:0.540:2	0/1:75,60:29:135:0.444:2	0/1:88,81:29:169:0.479:2	0/1:89,59:29:148:0.399:2	0/1:2,153:29:155:0.987:2	0/1:96,76:30:172:0.442:2	0/1:67,73:29:140:0.521:2	./.
chr1	15834360	rs2020902	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,11:32:42:0.262:2	0/1:25,16:32:41:0.390:2	0/1:18,18:33:36:0.500:2	./.	./.
chr1	15844615	rs1132312	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,25:27:76:0.329:2	0/1:25,28:28:53:0.528:2	0/1:5,4:28:9:0.444:2	0/1:49,45:28:94:0.479:2	0/1:56,37:29:93:0.398:2	0/1:49,59:29:108:0.546:2	0/1:34,37:30:71:0.521:2	0/1:1,92:29:93:0.989:2	0/1:62,55:29:118:0.470:2	0/1:45,27:27:72:0.375:2	./.
chr1	15850603	rs4645983	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:32:9:0.333:2	0/1:0,13:27:13:1.00:2	0/1:2,3:32:5:0.600:2	./.	./.
chr1	15850613	rs1052571	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,2:31:2:1.00:2	./.	0/1:0,5:30:5:1.00:2	0/1:6,4:27:10:0.400:2	./.	0/1:6,4:32:10:0.400:2	0/1:0,16:29:16:1.00:2	0/1:3,5:32:8:0.625:2	0/1:0,4:21:4:1.00:2	./.
chr1	15860803	rs11583306	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,47:32:100:0.470:2	0/1:1,109:32:110:0.991:2	0/1:57,60:33:117:0.513:2	./.	./.
chr1	15874866	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,64:30:147:0.435:2	./.	./.	./.	./.	./.
chr1	15888644	rs143037370	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,83:31:193:0.430:2	0/1:120,65:31:185:0.351:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	15892415	rs2236215	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,44:31:101:0.436:2	0/1:47,31:30:78:0.397:2	0/1:0,81:30:81:1.00:2	0/1:48,48:31:96:0.500:2	./.	./.
chr1	15904318	rs11544523	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,48:31:89:0.539:2	0/1:2,82:32:84:0.976:2	0/1:59,45:32:104:0.433:2	./.	./.
chr1	15905471	rs116813534	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,32:31:54:0.593:2	./.	./.	./.	./.
chr1	15905501	rs41270261	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,30:32:58:0.517:2	0/1:36,41:32:77:0.532:2	0/1:20,37:32:57:0.649:2	./.	./.
chr1	15909744	rs11580170	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,29:31:58:0.500:2	0/1:19,20:32:39:0.513:2	0/1:4,49:32:53:0.925:2	0/1:21,25:33:46:0.543:2	./.	./.
chr1	15909850	rs6429757	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,27:30:47:0.574:2	0/1:10,9:29:19:0.474:2	0/1:1,3:29:4:0.750:2	0/1:24,21:30:45:0.467:2	0/1:26,19:31:45:0.422:2	0/1:0,57:30:57:1.00:2	0/1:26,16:29:42:0.381:2	0/1:0,56:30:56:1.00:2	0/1:24,17:31:41:0.415:2	0/1:19,13:32:32:0.406:2	./.
chr1	15953223	rs77782333	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,10:15:83:0.120:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	15959977	rs3795763	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,12:32:37:0.324:2	0/1:25,15:32:40:0.375:2	0/1:0,44:31:44:1.00:2	0/1:21,21:33:42:0.500:2	./.	./.
chr1	15986547	rs3766163	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,21:32:48:0.438:2	0/1:33,23:31:56:0.411:2	0/1:2,53:32:55:0.964:2	0/1:31,26:34:57:0.456:2	./.	./.
chr1	15986868	rs35795032	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,43:32:89:0.483:2	./.	./.	./.
chr1	16042766	rs12091750	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,4:29:16:0.250:2	0/1:16,9:31:25:0.360:2	0/1:13,7:31:20:0.350:2	./.	./.	./.
chr1	16044401	rs16851970	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,36:29:79:0.456:2	0/1:71,34:30:105:0.324:2	./.	./.	./.	./.
chr1	16045099	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:138,9:30:147:0.061:2	./.	./.	./.	./.	./.	./.	./.
chr1	16046324	rs115985482	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,40:31:93:0.430:2	./.	./.	./.	./.
chr1	16051990	rs61738982	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,31:27:51:0.608:2	./.	./.	./.	./.
chr1	16056364	rs3817269	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,24:32:24:1.00:2	0/1:0,20:33:20:1.00:2	./.	0/1:17,17:32:34:0.500:2	./.	0/1:15,16:32:31:0.516:2	0/1:13,18:33:31:0.581:2	./.	./.	./.	./.
chr1	16057029	rs116455686	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,15:28:36:0.417:2	0/1:9,4:23:13:0.308:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	16064411	rs937592	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:3,138:33:142:0.979:2	0/1:2,85:31:87:0.977:2	./.	0/1:92,89:32:181:0.492:2	./.	0/1:89,97:32:186:0.522:2	0/1:110,77:32:187:0.412:2	./.	./.	./.	./.
chr1	16069612	rs142233857	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,12:31:20:0.600:2	./.
chr1	16069644	rs11584945	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,20:32:20:1.00:2	0/1:0,16:31:16:1.00:2	./.	0/1:14,17:30:31:0.548:2	./.	./.	0/1:7,7:30:14:0.500:2	./.	0/1:22,12:32:34:0.353:2	0/1:10,14:31:24:0.583:2	./.
chr1	16070871	rs7511651	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,3:30:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:32:6:0.500:2	./.	./.
chr1	16070912	rs7525747	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,10:31:21:0.476:2	0/1:6,7:31:13:0.538:2	./.	./.	./.	./.	./.	./.	0/1:10,10:30:20:0.500:2	0/1:3,6:32:9:0.667:2	./.
chr1	16095031	rs140170023	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,35:32:80:0.438:2	./.	./.	./.	./.
chr1	16096934	rs10927851	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:30:6:0.667:2	0/1:24,31:27:55:0.564:2	0/1:62,74:29:136:0.544:2	0/1:61,40:30:101:0.396:2	./.	./.	0/1:46,26:28:72:0.361:2	0/1:39,35:29:74:0.473:2	0/1:0,52:30:52:1.00:2
chr1	16101217	rs41268337	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,39:31:79:0.494:2	0/1:25,26:32:51:0.510:2	0/1:9,7:31:16:0.438:2	0/1:71,47:32:118:0.398:2	0/1:71,60:31:131:0.458:2	./.	./.	./.	0/1:56,52:32:108:0.481:2	0/1:55,47:32:102:0.461:2	./.
chr1	16111117	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:34:48:0.083:2	./.
chr1	16133978	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:30:75:0.053:2	./.	./.	./.	./.
chr1	16133987	rs7417535	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:33:71:0.056:2	0/1:42,47:32:89:0.528:2	./.	./.	./.
chr1	16134072	rs61744357	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,27:31:56:0.482:2	./.	./.	./.
chr1	16134129	rs61738972	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,27:31:75:0.360:2	./.	./.	./.
chr1	16134166	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:32:72:0.056:2	./.	./.	./.	./.	0/1:63,5:31:68:0.074:2
chr1	16202838	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:128:0.031:2	./.	./.	./.	./.
chr1	16255644	rs848208	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,18:30:40:0.450:2	./.	./.	./.	./.	./.
chr1	16256007	rs848209	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,28:33:62:0.452:2	./.	0/1:1,72:32:73:0.986:2	./.	0/1:50,37:32:87:0.425:2	0/1:0,104:33:104:1.00:2
chr1	16259813	rs848210	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,16:25:37:0.432:2	./.	0/1:0,48:29:48:1.00:2	./.	0/1:7,13:30:20:0.650:2	0/1:0,46:29:46:1.00:2
chr1	16260916	rs848211	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,38:32:85:0.447:2	./.	./.	./.	./.	./.
chr1	16261814	rs41269151	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,66:30:160:0.413:2	./.	./.	./.
chr1	16262404	rs61749277	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,50:29:75:0.667:2	./.	./.	./.	./.	./.
chr1	16263696	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:30:84:0.048:2	./.	./.	./.
chr1	16264330	rs199632433	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,4:32:83:0.048:2	0/1:73,10:26:83:0.120:2	0/1:58,6:27:64:0.094:2	0/1:77,8:29:85:0.094:2	0/1:73,8:30:81:0.099:2	./.	./.	0/1:53,9:30:62:0.145:2
chr1	16265308	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:30:70:0.057:2	./.	./.	./.	./.	./.
chr1	16271260	rs9661939	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,49:31:101:0.485:2	./.	0/1:33,33:31:66:0.500:2	0/1:1,38:31:39:0.974:2
chr1	16271681	rs79017841	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,4:33:60:0.067:2	./.	./.	./.	./.	./.	./.
chr1	16272250	rs848217	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,9:28:28:0.321:2	./.	0/1:0,13:27:13:1.00:2	./.	0/1:16,8:27:24:0.333:2	0/1:0,19:26:19:1.00:2
chr1	16330816	rs1763617	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,79:30:141:0.564:2	./.	./.	./.	./.	0/1:66,61:29:127:0.480:2
chr1	16332571	rs1763612	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,43:31:83:0.518:2
chr1	16332679	rs3738646	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,30:29:67:0.448:2	./.	./.	./.	./.	./.
chr1	16342237	rs1739840	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:31:16:1.00:2	0/1:1,10:30:11:0.909:2	0/1:0,3:30:3:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,14:29:14:1.00:2	0/1:16,7:29:23:0.304:2	0/1:0,4:28:4:1.00:2	./.	0/1:0,12:31:12:1.00:2	0/1:11,3:32:14:0.214:2	0/1:3,4:28:7:0.571:2
chr1	16344360	rs732286	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,46:31:47:0.979:2	0/1:0,30:31:30:1.00:2	0/1:0,10:30:10:1.00:2	0/1:2,70:32:72:0.972:2	0/1:0,71:31:72:1.00:2	0/1:40,43:32:83:0.518:2	0/1:1,78:32:79:0.987:2	./.	0/1:0,69:32:69:1.00:2	0/1:43,30:31:73:0.411:2	0/1:32,33:31:66:0.508:2
chr1	16344402	rs945416	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,36:32:37:0.973:2	0/1:0,18:32:18:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,52:31:52:1.00:2	0/1:26,17:32:43:0.395:2	0/1:2,69:32:71:0.972:2	./.	0/1:0,54:33:54:1.00:2	0/1:22,25:32:47:0.532:2	0/1:24,28:32:52:0.538:2
chr1	16344466	rs3738640	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,19:28:28:0.679:2	./.	./.	./.	./.	./.
chr1	16344494	rs1572381	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,10:29:10:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,3:28:3:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,10:30:10:1.00:2	0/1:15,7:30:22:0.318:2	0/1:0,10:31:11:1.00:2	./.	0/1:0,11:33:11:1.00:2	0/1:8,6:30:14:0.429:2	./.
chr1	16344625	rs945417	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:32:30:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,6:34:6:1.00:2	0/1:1,48:33:49:0.980:2	0/1:1,30:33:31:0.968:2	0/1:46,31:33:77:0.403:2	./.	./.	0/1:0,54:33:54:1.00:2	0/1:45,19:33:64:0.297:2	0/1:57,25:32:82:0.305:2
chr1	16344664	rs872222	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,15:27:32:0.484:2	0/1:7,9:30:16:0.563:2	0/1:0,4:30:4:1.00:2	0/1:2,52:29:54:0.963:2	0/1:1,40:31:41:0.976:2	0/1:45,24:30:69:0.348:2	0/1:0,34:29:34:1.00:2	./.	0/1:0,53:30:53:1.00:2	0/1:46,20:29:66:0.303:2	./.
chr1	16344683	rs872221	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,19:32:65:0.292:2
chr1	16344684	rs56783248	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,34:30:57:0.596:2	./.	./.	./.	./.	./.
chr1	16345735	rs1544131	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,48:32:114:0.421:2
chr1	16351275	rs10927887	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:29:56:1.00:2	0/1:1,34:28:35:0.971:2	0/1:0,5:32:5:1.00:2	0/1:0,76:30:76:1.00:2	0/1:0,78:28:78:1.00:2	0/1:54,45:29:99:0.455:2	0/1:0,67:29:67:1.00:2	./.	0/1:0,74:30:74:1.00:2	0/1:47,28:31:75:0.373:2	0/1:33,31:28:64:0.484:2
chr1	16353054	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:33:178:0.022:2	./.	./.	./.	./.	./.
chr1	16353060	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:33:186:0.022:2	./.	./.	./.	./.	./.
chr1	16353187	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:153,16:31:170:0.095:2	0/1:97,7:31:104:0.067:2	0/1:24,12:31:36:0.333:2	0/1:153,42:32:196:0.215:2	0/1:121,76:31:197:0.386:2	0/1:146,47:31:193:0.244:2	0/1:131,62:32:193:0.321:2	0/1:137,56:31:193:0.290:2	0/1:146,49:32:195:0.251:2	0/1:151,42:32:193:0.218:2	0/1:147,46:32:193:0.238:2
chr1	16353225	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:177,10:31:187:0.053:2	./.	./.	./.	./.	./.	./.	./.
chr1	16353256	.	C	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:85,12:29:97:0.124:2	0/1:60,5:31:65:0.077:2	0/1:23,7:28:30:0.233:2	0/1:104,6:32:110:0.055:2	0/1:90,19:32:110:0.174:2	0/1:102,9:29:111:0.081:2	0/1:105,12:29:118:0.103:2	0/1:111,7:30:118:0.059:2	0/1:89,11:33:100:0.110:2	0/1:101,18:32:119:0.151:2	0/1:104,9:32:113:0.080:2
chr1	16353257	rs371660947	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:85,12:23:97:0.124:2	0/1:60,5:26:65:0.077:2	0/1:21,8:24:29:0.276:2	0/1:104,5:27:109:0.046:2	0/1:91,19:28:110:0.173:2	0/1:101,9:26:110:0.082:2	0/1:105,10:27:115:0.087:2	0/1:110,7:26:117:0.060:2	0/1:88,11:27:99:0.111:2	0/1:98,18:27:116:0.155:2	0/1:104,9:25:113:0.080:2
chr1	16354394	rs200268763	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:113,71:32:184:0.386:2	0/1:134,53:31:187:0.283:2	0/1:61,59:31:120:0.492:2	0/1:136,57:31:193:0.295:2	0/1:134,65:31:199:0.327:2	0/1:127,63:32:190:0.332:2	0/1:127,67:31:194:0.345:2	0/1:134,58:32:192:0.302:2	0/1:134,61:32:195:0.313:2	0/1:126,70:32:197:0.357:2	0/1:121,69:32:191:0.363:2
chr1	16354590	rs12126269	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,64:31:160:0.400:2	0/1:46,37:31:85:0.446:2	./.	./.	./.	0/1:86,59:31:145:0.407:2	./.	./.	./.	./.	./.
chr1	16355638	rs79751787	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,21:31:43:0.488:2
chr1	16355728	rs58150371	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,22:32:84:0.262:2	0/1:83,33:32:116:0.284:2	./.	./.	./.	0/1:52,20:33:72:0.278:2	./.
chr1	16356497	rs7411607	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,3:30:24:0.125:2	0/1:13,5:31:18:0.278:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	16356501	rs1805152	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,23:29:24:0.958:2	0/1:0,17:30:17:1.00:2	0/1:0,5:28:5:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,51:30:51:1.00:2	0/1:41,28:31:69:0.406:2	0/1:0,73:30:73:1.00:2	./.	0/1:0,57:31:57:1.00:2	0/1:24,31:30:55:0.564:2	0/1:28,26:30:54:0.481:2
chr1	16356522	rs34471231	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,5:31:27:0.185:2	0/1:14,5:32:19:0.263:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	16356531	rs35747151	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,3:30:24:0.125:2	0/1:14,4:31:18:0.222:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	16356533	rs35154011	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,4:30:17:0.235:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	16357147	rs12140223	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,42:31:104:0.404:2	0/1:25,31:32:56:0.554:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	16358271	rs199587920	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:182,11:31:193:0.057:2	0/1:152,5:32:157:0.032:2	0/1:180,7:31:187:0.037:2	0/1:187,5:29:192:0.026:2	./.	./.	./.
chr1	16358311	rs139001368	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,4:32:152:0.026:2	0/1:146,11:33:157:0.070:2	0/1:131,6:30:137:0.044:2	0/1:159,5:33:165:0.030:2	./.	./.	./.	./.
chr1	16358323	rs201589941	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:125,7:32:132:0.053:2	./.	0/1:144,4:32:148:0.027:2	./.	./.	./.	./.
chr1	16358932	rs10803407	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:32:90:1.00:2	0/1:1,64:32:65:0.985:2	0/1:0,18:32:18:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,104:31:104:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,128:32:128:1.00:2	0/1:162,7:33:169:0.041:2	0/1:0,97:33:97:1.00:2	0/1:68,46:33:114:0.404:2	0/1:66,42:30:108:0.389:2
chr1	16359712	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:32:172:0.023:2	./.	./.	./.	./.
chr1	16360080	.	A	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,13:21:93:0.140:2	./.	0/1:91,13:17:104:0.125:2	./.	0/1:107,11:15:120:0.093:2	0/1:81,12:13:95:0.129:2	./.	./.
chr1	16360083	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,9:16:95:0.095:2	./.	./.	./.	./.	./.	./.	./.
chr1	16360086	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,15:13:107:0.140:2	./.	./.
chr1	16360090	rs111445697	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,16:29:140:0.114:2	./.	./.	0/1:94,9:28:103:0.087:2
chr1	16360137	rs12746751	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,49:32:114:0.430:2	0/1:22,32:30:54:0.593:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	16360144	rs371202740	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:175,7:33:182:0.038:2	0/1:144,8:32:152:0.053:2	0/1:162,9:32:171:0.053:2	0/1:175,5:29:180:0.028:2	0/1:173,11:31:184:0.060:2	0/1:168,10:32:178:0.056:2	./.	0/1:152,6:32:158:0.038:2
chr1	16371067	rs2015352	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,19:31:37:0.514:2	0/1:11,16:32:27:0.593:2	0/1:1,8:30:9:0.889:2	0/1:0,48:32:48:1.00:2	0/1:2,76:32:78:0.974:2	0/1:25,22:30:47:0.468:2	0/1:0,51:32:51:1.00:2	0/1:42,83:31:125:0.664:2	0/1:0,62:33:62:1.00:2	0/1:2,56:31:58:0.966:2	0/1:16,32:30:48:0.667:2
chr1	16373124	rs5257	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,34:30:85:0.400:2	0/1:31,26:29:57:0.456:2	0/1:0,12:29:12:1.00:2	0/1:4,116:29:121:0.967:2	0/1:0,76:30:76:1.00:2	0/1:1,113:30:114:0.991:2	0/1:1,80:29:81:0.988:2	0/1:76,86:29:162:0.531:2	0/1:0,100:31:100:1.00:2	0/1:0,92:30:92:1.00:2	0/1:0,92:29:92:1.00:2
chr1	16374533	rs2014562	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:33:88:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,15:32:15:1.00:2	0/1:1,83:32:84:0.988:2	0/1:0,83:32:83:1.00:2	0/1:1,82:32:83:0.988:2	0/1:0,89:32:89:1.00:2	0/1:45,82:32:127:0.646:2	0/1:0,83:33:83:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,75:32:75:1.00:2
chr1	16374994	rs1889788	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:93,74:32:167:0.443:2	0/1:75,37:32:112:0.330:2	0/1:10,28:31:38:0.737:2	0/1:64,97:31:161:0.602:2	0/1:60,124:31:184:0.674:2	0/1:49,127:31:176:0.722:2	0/1:67,113:32:180:0.628:2	0/1:92,99:31:191:0.518:2	0/1:61,120:32:181:0.663:2	0/1:67,116:32:183:0.634:2	0/1:56,129:32:185:0.697:2
chr1	16375032	rs121909132	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:138,31:30:169:0.183:2	./.	./.	./.	./.	./.	./.	./.
chr1	16375063	rs1889789	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,78:31:90:0.867:2	0/1:12,82:31:94:0.872:2	0/1:3,26:32:29:0.897:2	0/1:23,84:31:107:0.785:2	0/1:18,105:31:123:0.854:2	0/1:15,108:31:123:0.878:2	0/1:24,89:31:113:0.788:2	0/1:58,78:30:136:0.574:2	0/1:18,103:32:121:0.851:2	0/1:15,93:31:108:0.861:2	0/1:15,82:30:97:0.845:2
chr1	16375064	rs1889790	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,78:26:90:0.867:2	0/1:12,80:27:92:0.870:2	0/1:3,26:27:29:0.897:2	0/1:22,84:27:106:0.792:2	0/1:17,105:26:122:0.861:2	0/1:15,108:25:123:0.878:2	0/1:24,88:25:112:0.786:2	0/1:57,78:25:135:0.578:2	0/1:18,100:27:119:0.847:2	0/1:13,93:26:106:0.877:2	0/1:15,82:25:98:0.845:2
chr1	16375510	rs11588392	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,15:31:35:0.429:2	./.	./.	./.
chr1	16376191	rs7367494	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,113:31:185:0.611:2	0/1:62,90:31:152:0.592:2	0/1:46,29:31:75:0.387:2	0/1:95,89:31:184:0.484:2	0/1:99,82:31:181:0.453:2	0/1:78,103:31:181:0.569:2	0/1:111,72:31:183:0.393:2	0/1:131,62:31:193:0.321:2	0/1:90,93:31:183:0.508:2	0/1:91,89:31:180:0.494:2	0/1:79,100:30:179:0.559:2
chr1	16376319	rs7368151	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,121:27:121:1.00:2	0/1:1,64:28:65:0.985:2	0/1:0,15:29:15:1.00:2	0/1:2,143:29:145:0.986:2	0/1:3,124:28:127:0.976:2	0/1:0,121:28:121:1.00:2	0/1:1,106:30:107:0.991:2	0/1:68,121:28:189:0.640:2	0/1:1,140:30:141:0.993:2	0/1:2,108:29:110:0.982:2	0/1:0,149:28:149:1.00:2
chr1	16377999	rs6650118	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,59:33:160:0.369:2	0/1:58,39:32:97:0.402:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	16378000	rs6650119	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,59:32:159:0.371:2	0/1:60,39:31:99:0.394:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	16378215	rs5252	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,27:32:56:0.482:2	0/1:20,12:32:32:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	16378725	rs12140311	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,86:32:180:0.478:2	0/1:107,74:32:181:0.409:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	16380196	rs5253	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,101:30:101:1.00:2	0/1:0,73:30:73:1.00:2	./.	0/1:0,177:30:177:1.00:2	0/1:1,193:30:194:0.995:2	0/1:1,177:30:178:0.994:2	0/1:2,182:30:184:0.989:2	0/1:0,185:30:185:1.00:2	0/1:0,170:31:170:1.00:2	0/1:0,143:30:143:1.00:2	0/1:0,130:30:130:1.00:2
chr1	16380243	rs2275166	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,90:30:91:0.989:2	0/1:0,69:30:69:1.00:2	0/1:0,25:31:25:1.00:2	0/1:96,71:31:167:0.425:2	0/1:1,120:31:121:0.992:2	0/1:0,151:30:151:1.00:2	0/1:0,102:31:102:1.00:2	0/1:122,42:31:164:0.256:2	0/1:0,145:32:145:1.00:2	0/1:0,105:30:105:1.00:2	./.
chr1	16380252	rs111663047	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,82:32:83:0.988:2	0/1:0,68:32:68:1.00:2	./.	0/1:87,69:32:156:0.442:2	0/1:0,113:31:113:1.00:2	0/1:1,143:31:144:0.993:2	0/1:1,90:31:91:0.989:2	0/1:121,43:32:164:0.262:2	0/1:0,130:32:130:1.00:2	0/1:1,102:31:103:0.990:2	./.
chr1	16383336	rs12746138	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:47,22:27:69:0.319:2	0/1:37,9:30:46:0.196:2	./.	0/1:0,49:31:49:1.00:2	0/1:0,31:31:31:1.00:2	0/1:1,38:31:40:0.974:2	0/1:0,31:31:31:1.00:2	0/1:63,53:30:116:0.457:2	0/1:0,26:32:26:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,55:30:55:1.00:2
chr1	16383348	rs61769892	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,40:28:80:0.500:2	./.	./.	./.	0/1:82,72:30:154:0.468:2	./.	./.	0/1:2,69:30:71:0.972:2
chr1	16383742	rs1057857	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:56,135:33:191:0.707:2	0/1:43,85:32:128:0.664:2	./.	0/1:108,87:33:195:0.446:2	0/1:99,89:31:188:0.473:2	0/1:79,112:32:191:0.586:2	0/1:94,92:32:186:0.495:2	0/1:2,178:32:180:0.989:2	0/1:97,94:34:191:0.492:2	0/1:70,125:32:195:0.641:2	0/1:70,114:31:184:0.620:2
chr1	16384970	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,4:33:12:0.333:2
chr1	16384986	rs28496958	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,3:29:7:0.429:2	./.	./.	0/1:2,8:27:10:0.800:2	0/1:2,7:28:9:0.778:2	./.	0/1:7,9:27:16:0.563:2	./.	./.	./.	./.
chr1	16384998	rs1807285	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:29:9:0.333:2	0/1:3,3:30:6:0.500:2	./.	0/1:2,9:28:11:0.818:2	./.	./.	./.	./.
chr1	16384999	rs1807284	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:27:9:0.333:2	0/1:3,3:30:6:0.500:2	./.	0/1:2,9:28:11:0.818:2	./.	./.	./.	./.
chr1	16385042	rs77667563	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,4:23:20:0.200:2	./.	./.	0/1:7,8:32:15:0.533:2	0/1:3,3:30:6:0.500:2	./.	0/1:1,4:25:5:0.800:2	./.	./.	0/1:6,4:30:10:0.400:2	./.
chr1	16385131	rs1832151	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:131,54:28:185:0.292:2	0/1:106,41:30:147:0.279:2	./.	./.	./.	./.	./.	0/1:136,58:29:194:0.299:2	./.	./.	./.
chr1	16385175	rs17853748	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:129,59:31:188:0.314:2	0/1:106,78:31:184:0.424:2	0/1:53,24:31:77:0.312:2	0/1:2,159:31:161:0.988:2	0/1:1,161:31:163:0.994:2	0/1:77,101:30:178:0.567:2	0/1:1,158:31:159:0.994:2	0/1:129,61:31:190:0.321:2	0/1:0,150:32:150:1.00:2	0/1:34,130:31:165:0.793:2	0/1:98,66:31:164:0.402:2
chr1	16385178	rs80297394	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,73:31:176:0.415:2	./.	./.	./.	./.	./.
chr1	16385184	rs75273615	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:158,27:30:185:0.146:2	0/1:141,46:31:187:0.246:2	0/1:49,22:30:71:0.310:2	0/1:81,67:31:148:0.453:2	0/1:98,58:32:156:0.372:2	0/1:141,29:30:170:0.171:2	0/1:83,69:32:152:0.454:2	./.	0/1:60,70:31:130:0.538:2	0/1:108,39:31:147:0.265:2	./.
chr1	16386001	rs371920912	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,31:31:92:0.337:2	./.	./.	./.	./.	./.	./.
chr1	16386008	rs2863452	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:95,39:33:134:0.291:2	0/1:55,36:32:91:0.396:2	./.	0/1:1,142:32:143:0.993:2	0/1:1,84:31:85:0.988:2	0/1:0,156:32:156:1.00:2	0/1:4,122:33:127:0.968:2	0/1:81,89:33:170:0.524:2	0/1:1,98:33:99:0.990:2	0/1:0,109:33:109:1.00:2	0/1:1,105:32:106:0.991:2
chr1	16386065	rs61769893	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,12:31:130:0.092:2	./.	./.	./.	./.	0/1:118,36:32:154:0.234:2	./.	./.	./.	./.	./.
chr1	16386416	rs9442230	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,67:31:111:0.604:2	0/1:45,34:30:79:0.430:2	./.	0/1:2,119:30:121:0.983:2	0/1:0,124:30:124:1.00:2	0/1:2,152:30:154:0.987:2	0/1:0,72:30:72:1.00:2	0/1:40,110:30:150:0.733:2	0/1:0,110:31:110:1.00:2	0/1:2,90:31:92:0.978:2	0/1:0,54:31:54:1.00:2
chr1	16386447	rs11576236	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,111:30:111:1.00:2	0/1:0,72:30:72:1.00:2	./.	0/1:1,116:29:118:0.991:2	0/1:0,120:30:121:1.00:2	0/1:2,162:31:164:0.988:2	0/1:1,59:29:60:0.983:2	0/1:0,136:29:136:1.00:2	0/1:0,105:31:105:1.00:2	0/1:0,88:30:88:1.00:2	0/1:0,43:28:43:1.00:2
chr1	16386495	rs71510977	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:79,53:32:132:0.402:2	0/1:44,30:31:74:0.405:2	./.	0/1:105,48:31:153:0.314:2	0/1:60,105:31:166:0.636:2	0/1:42,110:31:152:0.724:2	0/1:57,64:30:121:0.529:2	./.	0/1:38,92:32:130:0.708:2	0/1:54,77:31:131:0.588:2	./.
chr1	16386501	rs200418963	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:130,10:26:140:0.071:2	./.	./.	./.	./.	0/1:154,9:29:163:0.055:2	./.	./.	./.	./.	./.
chr1	16388602	rs200579113	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,12:31:63:0.190:2	./.	./.	./.
chr1	16388642	rs79991837	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,4:31:100:0.040:2	0/1:135,6:32:141:0.043:2	./.	0/1:119,4:31:123:0.033:2	./.	0/1:74,4:32:78:0.051:2	./.	./.
chr1	16388646	rs2863456	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:50,63:30:113:0.558:2	0/1:32,31:31:63:0.492:2	./.	0/1:1,89:30:90:0.989:2	0/1:3,130:30:133:0.977:2	0/1:0,105:31:105:1.00:2	0/1:1,116:31:117:0.991:2	0/1:1,59:31:60:0.983:2	0/1:0,73:31:73:1.00:2	0/1:0,77:31:77:1.00:2	0/1:0,49:31:49:1.00:2
chr1	16389026	rs2863458	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,56:29:105:0.533:2	./.	./.	./.	0/1:66,52:28:118:0.441:2	./.	./.	0/1:3,123:29:126:0.976:2
chr1	16390116	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.	./.	./.	./.
chr1	16451767	rs3754334	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,9:32:13:0.692:2	0/1:2,158:30:160:0.988:2	./.	./.	./.	0/1:80,60:31:140:0.429:2	./.	./.	0/1:51,42:30:93:0.452:2
chr1	16456763	rs35903225	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,86:32:175:0.491:2	./.	./.	./.	./.	./.	./.
chr1	16460339	rs6669624	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,19:29:36:0.528:2
chr1	16464673	rs2230597	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,8:32:18:0.444:2	0/1:2,6:31:8:0.750:2	./.	0/1:0,29:30:29:1.00:2	0/1:9,9:30:18:0.500:2	./.	./.	0/1:0,21:31:21:1.00:2	./.	0/1:4,6:30:10:0.600:2	0/1:3,4:32:7:0.571:2
chr1	16464854	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:32:70:0.057:2	./.
chr1	16474880	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:31:63:0.063:2	./.	./.	./.
chr1	16474932	rs145113491	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,14:12:92:0.152:2	./.	./.	./.	./.	./.	./.
chr1	16475123	rs6678616	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:16,9:30:25:0.360:2	0/1:9,10:31:19:0.526:2	./.	0/1:0,28:28:28:1.00:2	./.	./.	./.	0/1:1,33:28:35:0.971:2	./.	./.	0/1:5,8:28:13:0.615:2
chr1	16475126	rs6678618	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:14,9:32:23:0.391:2	0/1:7,10:32:17:0.588:2	./.	0/1:0,28:30:28:1.00:2	./.	./.	./.	0/1:1,33:30:34:0.971:2	./.	./.	0/1:5,9:31:14:0.643:2
chr1	16531263	rs61749279	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,34:32:77:0.442:2	./.	./.	./.	./.	./.	./.
chr1	16532498	rs41269185	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,171:32:175:0.977:2	./.	./.	./.	./.
chr1	16532803	rs221050	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:32:16:0.563:2	./.	./.	./.	./.	./.	./.	./.	0/1:29,35:32:64:0.547:2
chr1	16532848	rs221051	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:26:9:0.444:2	./.	./.	./.	./.	./.	./.	./.	0/1:28,23:30:51:0.451:2
chr1	16533022	rs221052	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,3:30:4:0.750:2	0/1:1,2:33:3:0.667:2	0/1:0,2:29:2:1.00:2	0/1:0,2:28:2:1.00:2	0/1:0,2:31:2:1.00:2	./.	0/1:0,2:30:2:1.00:2	0/1:0,7:31:7:1.00:2	./.	./.
chr1	16534255	rs221057	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:33:14:0.571:2	./.	./.	./.	./.	./.	./.	./.	0/1:34,25:30:59:0.424:2
chr1	16534646	rs221058	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,6:33:17:0.353:2	./.	./.	./.	./.	./.	./.	./.	0/1:60,58:29:118:0.492:2
chr1	16535367	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,3:34:45:0.067:2
chr1	16543631	rs150891458	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,67:31:153:0.438:2	./.	./.	./.	./.	./.	./.
chr1	16559053	rs142028968	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:140,4:33:144:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr1	16577794	rs35196193	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,45:31:82:0.549:2	./.	./.	./.	./.	./.	./.
chr1	16577908	rs12069239	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,11:33:16:0.688:2	./.	0/1:48,41:32:89:0.461:2	./.	0/1:3,70:32:73:0.959:2	./.	./.	./.	./.
chr1	16641899	rs2273311	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,55:32:91:0.604:2	0/1:30,24:32:54:0.444:2	./.	0/1:0,106:32:106:1.00:2	0/1:50,50:32:100:0.500:2	0/1:0,109:32:109:1.00:2	./.	0/1:4,117:32:121:0.967:2	0/1:0,111:32:111:1.00:2	0/1:0,82:33:82:1.00:2	0/1:70,60:33:130:0.462:2
chr1	16730308	rs41269193	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,35:30:87:0.402:2	./.	0/1:56,37:30:93:0.398:2	0/1:38,27:30:65:0.415:2	./.
chr1	16731510	rs525409	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,30:33:56:0.536:2	0/1:28,13:32:41:0.317:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,35:33:95:0.368:2
chr1	16735629	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,48:31:95:0.505:2	./.	./.	./.
chr1	16736132	rs4661746	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	0/1:21,20:29:41:0.488:2	./.	./.	./.	./.	./.	0/1:20,20:28:40:0.500:2
chr1	16736138	rs146290198	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,13:31:33:0.394:2	./.	0/1:17,13:29:30:0.433:2	./.	./.	./.	./.	./.
chr1	16767275	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:31:160:0.025:2	./.	./.	./.	./.
chr1	16890441	rs3863779	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:188,6:30:195:0.031:2	./.	0/1:57,5:31:62:0.081:2	0/1:150,43:31:193:0.223:2	0/1:165,26:31:191:0.136:2	0/1:142,55:31:197:0.279:2	./.	0/1:153,45:31:198:0.227:2	0/1:175,18:32:193:0.093:2	./.	0/1:173,20:32:193:0.104:2
chr1	16890475	rs200730231	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,30:30:188:0.161:2	./.
chr1	16890484	rs12117084	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:109,11:34:120:0.092:2	0/1:154,42:34:196:0.214:2	0/1:179,17:33:196:0.087:2	0/1:138,56:33:194:0.289:2	./.	0/1:149,44:32:193:0.228:2	0/1:178,17:34:195:0.087:2	./.	0/1:174,18:33:193:0.094:2
chr1	16890500	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:183,13:29:196:0.066:2	./.	./.	./.	0/1:188,5:30:193:0.026:2	./.	./.
chr1	16890534	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:190,5:30:195:0.026:2	./.	0/1:184,6:30:190:0.032:2	0/1:189,6:31:195:0.031:2	./.	./.	./.
chr1	16890539	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,6:33:189:0.032:2	0/1:187,5:32:192:0.026:2	./.	./.	./.
chr1	16890589	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,5:31:178:0.028:2	./.	./.	./.	./.
chr1	16890598	rs2990550	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:77,75:32:153:0.493:2	0/1:102,51:31:153:0.333:2	0/1:36,49:31:85:0.576:2	0/1:73,93:31:166:0.560:2	0/1:85,67:31:152:0.441:2	0/1:106,69:31:175:0.394:2	0/1:99,61:31:160:0.381:2	0/1:70,83:30:153:0.542:2	0/1:97,72:32:170:0.426:2	0/1:87,85:31:172:0.494:2	0/1:51,92:31:143:0.643:2
chr1	16890602	rs2990551	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:124,28:32:152:0.184:2	0/1:139,18:31:157:0.115:2	0/1:57,18:31:75:0.240:2	0/1:159,14:32:173:0.081:2	0/1:130,22:31:152:0.145:2	./.	0/1:132,21:32:153:0.137:2	0/1:141,21:32:162:0.130:2	./.	0/1:109,63:32:172:0.366:2	0/1:86,58:32:144:0.403:2
chr1	16890607	rs200783506	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:146,5:32:151:0.033:2	0/1:154,5:32:159:0.031:2	0/1:51,18:32:69:0.261:2	0/1:153,12:32:165:0.073:2	0/1:139,7:32:146:0.048:2	./.	0/1:135,8:32:143:0.056:2	0/1:142,7:31:149:0.047:2	./.	0/1:157,10:32:167:0.060:2	0/1:126,15:31:141:0.106:2
chr1	16890639	rs1043750	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:99,52:30:151:0.344:2	0/1:94,45:31:139:0.324:2	0/1:32,9:30:41:0.220:2	0/1:107,21:30:128:0.164:2	0/1:122,8:30:130:0.062:2	0/1:69,73:29:142:0.514:2	0/1:70,32:30:102:0.314:2	0/1:92,41:30:133:0.308:2	0/1:116,42:31:158:0.266:2	0/1:116,19:31:135:0.141:2	0/1:46,73:31:119:0.613:2
chr1	16890644	rs2992339	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:113,41:32:154:0.266:2	0/1:105,34:32:139:0.245:2	0/1:17,16:32:33:0.485:2	0/1:89,43:32:132:0.326:2	0/1:111,20:30:131:0.153:2	./.	0/1:83,14:31:97:0.144:2	0/1:84,46:31:130:0.354:2	0/1:137,24:32:161:0.149:2	0/1:73,56:31:129:0.434:2	0/1:85,43:32:128:0.336:2
chr1	16890649	rs373123987	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,6:31:130:0.046:2	./.
chr1	16890671	rs2419526	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,79:32:138:0.572:2	0/1:50,59:32:109:0.541:2	0/1:8,16:32:24:0.667:2	0/1:65,56:31:121:0.463:2	0/1:83,39:30:122:0.320:2	0/1:66,69:32:135:0.511:2	0/1:42,37:31:79:0.468:2	0/1:39,78:31:117:0.667:2	0/1:74,74:31:148:0.500:2	0/1:50,57:31:107:0.533:2	0/1:1,129:32:130:0.992:2
chr1	16890672	rs2419525	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,78:30:137:0.569:2	0/1:50,59:30:109:0.541:2	0/1:8,16:30:24:0.667:2	0/1:65,56:30:121:0.463:2	0/1:84,39:29:123:0.317:2	0/1:66,69:30:135:0.511:2	0/1:42,37:30:79:0.468:2	0/1:40,76:30:117:0.655:2	0/1:73,73:30:147:0.500:2	0/1:53,55:30:108:0.509:2	0/1:2,126:30:129:0.984:2
chr1	16890681	rs200760413	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,11:34:143:0.077:2	./.	./.
chr1	16893689	rs201227350	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:173,16:29:190:0.085:2	./.	./.	./.	0/1:173,7:31:180:0.039:2	./.	./.
chr1	16893691	rs4098127	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:176,16:31:193:0.083:2	./.	./.	./.	0/1:174,7:29:181:0.039:2	./.	./.
chr1	16893701	rs3927566	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,4:31:86:0.047:2	./.	./.	0/1:190,8:32:198:0.040:2	./.	./.	./.	./.	./.
chr1	16893716	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:174,22:29:196:0.112:2	./.	./.	./.	0/1:171,20:31:191:0.105:2	./.	./.
chr1	16893721	rs201533998	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:171,22:32:193:0.114:2	0/1:174,20:32:194:0.103:2	./.	0/1:183,14:33:197:0.071:2	0/1:184,10:32:194:0.052:2	./.	0/1:190,8:33:198:0.040:2	0/1:189,6:32:195:0.031:2	./.	0/1:172,19:31:191:0.099:2	0/1:178,14:33:192:0.073:2
chr1	16893736	rs4111893	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,4:31:103:0.039:2	./.	./.	./.	./.	0/1:183,9:32:193:0.047:2	./.	./.	./.
chr1	16893739	rs199583758	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,28:32:189:0.148:2	./.	./.
chr1	16893742	rs4111894	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,4:33:103:0.039:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	16893752	rs11488476	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:159,34:32:195:0.176:2	./.	./.	./.	0/1:152,36:35:188:0.191:2	./.	./.
chr1	16893784	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,10:32:200:0.050:2	./.	./.	./.	./.	./.	./.	./.
chr1	16893813	rs58611269	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2
chr1	16893837	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,19:30:200:0.095:2	./.	./.
chr1	16893841	rs77284342	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:182,5:32:187:0.027:2	0/1:155,9:32:164:0.055:2	./.	0/1:116,5:32:121:0.041:2	0/1:103,14:32:117:0.120:2	./.	0/1:124,14:32:138:0.101:2	0/1:177,12:31:189:0.063:2	./.	0/1:147,24:31:171:0.140:2	./.
chr1	16895586	rs78194517	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,35:31:195:0.179:2	./.
chr1	16895622	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,6:30:198:0.030:2	0/1:183,5:31:188:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	16895623	rs373437793	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,16:31:200:0.080:2	./.	./.
chr1	16895625	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,18:29:186:0.097:2	./.
chr1	16895634	rs75027498	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,180:33:190:0.947:2	0/1:9,161:32:170:0.947:2	0/1:7,55:32:62:0.887:2	0/1:57,134:32:191:0.702:2	0/1:52,128:32:180:0.711:2	0/1:110,81:32:191:0.424:2	0/1:9,183:32:192:0.953:2	0/1:58,132:32:190:0.695:2	0/1:7,183:33:190:0.963:2	0/1:15,175:32:190:0.921:2	0/1:48,145:32:193:0.751:2
chr1	16895695	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:115,8:33:123:0.065:2	0/1:97,6:33:103:0.058:2	./.	0/1:100,4:34:104:0.038:2	0/1:88,6:32:94:0.064:2	0/1:116,14:31:130:0.108:2	0/1:78,6:33:84:0.071:2	0/1:103,10:32:113:0.088:2	0/1:126,8:34:134:0.060:2	0/1:123,4:32:127:0.031:2	0/1:111,9:34:120:0.075:2
chr1	16907303	rs201805881	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:184,14:30:198:0.071:2	0/1:184,12:31:196:0.061:2	0/1:182,16:30:198:0.081:2	0/1:174,22:31:197:0.112:2	0/1:192,4:33:196:0.020:2	./.	0/1:163,26:31:189:0.138:2	./.	./.
chr1	16907307	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,8:32:194:0.041:2	./.
chr1	16907328	rs78540200	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,143:33:195:0.733:2	0/1:38,156:33:194:0.804:2	0/1:44,152:32:196:0.776:2	0/1:50,146:33:196:0.745:2	0/1:30,163:33:193:0.845:2	0/1:103,95:32:198:0.480:2	0/1:40,152:33:192:0.792:2	0/1:47,151:33:198:0.763:2	0/1:60,136:34:196:0.694:2	0/1:64,131:33:195:0.672:2	0/1:32,155:33:187:0.829:2
chr1	16909052	rs140548913	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,129:32:184:0.701:2	0/1:48,95:32:143:0.664:2	0/1:23,19:31:43:0.452:2	0/1:116,76:31:192:0.396:2	0/1:106,92:31:198:0.465:2	0/1:89,102:31:192:0.534:2	0/1:78,116:31:194:0.598:2	0/1:60,117:31:177:0.661:2	0/1:22,166:32:188:0.883:2	0/1:72,120:31:192:0.625:2	0/1:45,137:31:182:0.753:2
chr1	16909100	rs143269469	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:145,35:33:180:0.194:2	0/1:135,48:33:183:0.262:2	0/1:67,17:31:84:0.202:2	0/1:177,15:33:192:0.078:2	0/1:182,13:34:196:0.067:2	0/1:159,33:33:192:0.172:2	0/1:161,35:33:196:0.179:2	0/1:130,59:32:189:0.312:2	0/1:179,10:33:189:0.053:2	0/1:145,45:33:190:0.237:2	0/1:141,44:34:186:0.238:2
chr1	16909121	.	G	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:184,5:30:189:0.026:2	0/1:185,7:30:192:0.036:2	./.	0/1:186,9:30:195:0.046:2	./.	0/1:190,5:32:195:0.026:2	0/1:190,6:30:196:0.031:2	./.	0/1:184,5:32:189:0.026:2	0/1:184,5:31:189:0.026:2	0/1:180,6:31:186:0.032:2
chr1	16909129	rs199798572	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:92,98:32:190:0.516:2	0/1:94,89:32:183:0.486:2	0/1:46,44:32:90:0.489:2	0/1:125,68:31:193:0.352:2	0/1:112,77:32:189:0.407:2	0/1:122,68:32:190:0.358:2	0/1:89,103:32:192:0.536:2	0/1:113,74:32:187:0.396:2	0/1:109,80:33:189:0.423:2	0/1:96,91:31:187:0.487:2	0/1:82,104:32:186:0.559:2
chr1	16909133	rs375545829	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:184,4:33:188:0.021:2	0/1:189,4:32:193:0.021:2	./.	./.	0/1:182,14:32:196:0.071:2	./.	./.	./.	./.	./.	./.
chr1	16909134	rs201581469	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:189,4:33:193:0.021:2	./.	0/1:185,8:32:193:0.041:2	./.	./.	./.	./.	0/1:183,7:33:190:0.037:2	0/1:183,6:32:189:0.032:2	./.
chr1	16909161	rs199600066	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:160,31:32:191:0.162:2	0/1:174,17:31:191:0.089:2	0/1:79,7:32:86:0.081:2	0/1:175,15:33:190:0.079:2	0/1:184,10:29:194:0.052:2	./.	0/1:166,32:33:198:0.162:2	0/1:187,7:33:194:0.036:2	0/1:169,18:31:187:0.096:2	0/1:158,29:32:187:0.155:2	0/1:169,19:31:188:0.101:2
chr1	16909191	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,18:34:172:0.105:2
chr1	16909192	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,15:32:189:0.079:2	./.	./.
chr1	16909208	rs200714079	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:149,22:31:171:0.129:2	0/1:125,18:32:143:0.126:2	0/1:51,3:34:54:0.056:2	./.	0/1:118,7:31:125:0.056:2	./.	0/1:137,13:32:150:0.087:2	0/1:178,8:31:186:0.043:2	0/1:185,6:34:191:0.031:2	0/1:139,19:32:158:0.120:2	0/1:159,15:32:174:0.086:2
chr1	16909212	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:152,6:31:158:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr1	16909216	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:152,5:31:158:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr1	16909220	rs201826071	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:124,47:32:171:0.275:2	0/1:90,38:32:128:0.297:2	./.	0/1:117,40:32:157:0.255:2	0/1:78,28:31:106:0.264:2	0/1:108,38:31:146:0.260:2	0/1:102,44:32:146:0.301:2	0/1:146,28:31:174:0.161:2	0/1:118,72:33:190:0.379:2	0/1:115,38:32:153:0.248:2	0/1:135,37:32:172:0.215:2
chr1	16909222	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,8:31:156:0.051:2	./.	./.	./.	./.	./.	0/1:147,9:33:156:0.058:2	./.
chr1	16909246	rs373061760	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,5:31:25:0.200:2	./.	./.	0/1:97,7:33:104:0.067:2	./.	./.	./.	./.	./.
chr1	16913560	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:29:195:0.026:2	./.	./.	./.	./.
chr1	16913579	rs183653891	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,48:30:195:0.247:2	./.	./.
chr1	16913584	rs629538	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:157,38:30:195:0.195:2	0/1:154,37:29:191:0.194:2	0/1:141,22:30:163:0.135:2	./.	./.	./.	0/1:171,22:30:193:0.114:2	0/1:141,46:30:187:0.246:2	0/1:182,11:29:193:0.057:2	0/1:27,152:30:179:0.849:2	./.
chr1	16913612	rs629889	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:158,38:32:196:0.194:2	0/1:152,39:31:191:0.204:2	0/1:157,22:31:179:0.123:2	./.	./.	./.	0/1:172,24:32:197:0.122:2	0/1:139,53:31:192:0.276:2	0/1:182,10:33:192:0.052:2	0/1:9,170:31:180:0.950:2	./.
chr1	16913620	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,6:27:196:0.031:2	./.	./.	./.	0/1:189,5:28:194:0.026:2
chr1	16913633	rs75826632	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:132,63:32:195:0.323:2	0/1:146,51:32:197:0.259:2	0/1:122,41:31:163:0.252:2	0/1:126,73:32:199:0.367:2	0/1:103,85:32:189:0.452:2	0/1:170,22:31:192:0.115:2	0/1:120,74:32:194:0.381:2	0/1:185,5:30:190:0.026:2	0/1:61,132:34:193:0.684:2	./.	0/1:185,6:32:191:0.031:2
chr1	16913677	rs200743207	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:104,42:27:146:0.288:2	0/1:92,35:27:127:0.276:2	0/1:26,28:27:54:0.519:2	0/1:148,34:26:184:0.187:2	0/1:134,48:27:182:0.264:2	0/1:151,49:26:200:0.245:2	0/1:105,28:27:133:0.211:2	0/1:118,15:24:133:0.113:2	0/1:166,33:28:199:0.166:2	0/1:5,74:26:79:0.937:2	./.
chr1	16914250	rs202115379	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:81,13:30:94:0.138:2	0/1:164,30:29:195:0.155:2	./.	./.	./.	./.	./.	./.	./.
chr1	16914252	rs1020241	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:149,41:32:190:0.216:2	0/1:116,27:33:143:0.189:2	0/1:59,32:32:91:0.352:2	0/1:164,33:32:197:0.168:2	0/1:172,25:32:197:0.127:2	./.	0/1:139,57:31:196:0.291:2	0/1:130,62:32:192:0.323:2	./.	0/1:95,97:32:192:0.505:2	0/1:67,124:32:191:0.649:2
chr1	16914275	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,36:30:197:0.183:2	./.	./.
chr1	16914306	rs1967910	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:122,43:32:165:0.261:2	0/1:124,38:31:162:0.235:2	0/1:24,14:31:38:0.368:2	0/1:148,29:32:177:0.164:2	0/1:105,33:32:138:0.239:2	./.	0/1:78,36:31:114:0.316:2	0/1:108,44:32:152:0.289:2	./.	0/1:68,86:32:154:0.558:2	0/1:46,103:32:150:0.691:2
chr1	16915357	rs199859875	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:80,96:31:176:0.545:2	0/1:51,68:31:119:0.571:2	0/1:16,31:31:47:0.660:2	0/1:131,57:31:188:0.303:2	0/1:113,78:31:191:0.408:2	0/1:82,107:31:189:0.566:2	0/1:82,109:31:191:0.571:2	0/1:83,103:31:186:0.554:2	0/1:27,149:32:176:0.847:2	0/1:94,99:31:193:0.513:2	0/1:47,133:31:180:0.739:2
chr1	16915405	rs201355992	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:147,35:33:182:0.192:2	0/1:141,50:32:191:0.262:2	0/1:50,21:34:71:0.296:2	0/1:167,15:33:182:0.082:2	0/1:177,17:34:194:0.088:2	0/1:174,23:33:197:0.117:2	0/1:160,34:32:194:0.175:2	0/1:143,49:33:192:0.255:2	0/1:175,15:35:190:0.079:2	0/1:149,41:32:190:0.216:2	0/1:124,60:33:184:0.326:2
chr1	16915426	.	G	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:183,5:31:188:0.027:2	0/1:183,9:32:193:0.047:2	./.	0/1:180,6:31:186:0.032:2	./.	0/1:189,7:29:196:0.036:2	./.	./.	./.	0/1:184,8:29:192:0.042:2	0/1:176,10:32:186:0.054:2
chr1	16915434	rs202129231	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:96,83:32:179:0.464:2	0/1:89,103:32:192:0.536:2	0/1:31,36:32:67:0.537:2	0/1:99,84:32:183:0.459:2	0/1:113,82:31:195:0.421:2	0/1:131,61:32:193:0.318:2	0/1:87,104:32:191:0.545:2	0/1:112,82:33:194:0.423:2	0/1:104,84:33:188:0.447:2	0/1:92,95:32:187:0.508:2	0/1:90,93:32:183:0.508:2
chr1	16915438	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:173,12:32:185:0.065:2	0/1:188,7:31:195:0.036:2	0/1:192,5:32:197:0.025:2	0/1:191,6:29:197:0.030:2	./.	0/1:176,14:34:190:0.074:2	./.	./.
chr1	16915439	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:180,7:33:187:0.037:2	0/1:184,6:32:190:0.032:2	./.	0/1:171,14:30:185:0.076:2	./.	./.	./.	./.	0/1:183,7:35:190:0.037:2	./.	./.
chr1	16915466	rs200264463	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:169,23:33:192:0.120:2	0/1:175,19:32:194:0.098:2	0/1:85,8:33:93:0.086:2	0/1:162,24:32:186:0.129:2	0/1:188,9:32:197:0.046:2	./.	0/1:174,23:32:197:0.117:2	0/1:186,11:33:197:0.056:2	0/1:173,19:33:192:0.099:2	0/1:152,36:32:188:0.191:2	0/1:170,19:33:189:0.101:2
chr1	16915496	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,12:32:194:0.062:2
chr1	16915497	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,13:31:186:0.070:2	./.	./.
chr1	16915513	rs368775000	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:159,21:32:180:0.117:2	0/1:129,9:32:138:0.065:2	0/1:52,6:32:59:0.103:2	./.	0/1:128,8:33:136:0.059:2	./.	0/1:159,5:31:164:0.030:2	0/1:167,15:32:182:0.082:2	0/1:182,10:31:192:0.052:2	0/1:136,24:33:160:0.150:2	0/1:180,11:32:191:0.058:2
chr1	16915517	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:172,8:32:181:0.044:2	./.	./.	./.	./.	./.	./.	./.
chr1	16915521	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:51,3:33:54:0.056:2	0/1:166,12:29:178:0.067:2	./.	./.	./.	./.	./.	./.	./.
chr1	16915525	rs201237274	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:126,40:32:166:0.241:2	0/1:99,34:32:133:0.256:2	0/1:43,6:31:49:0.122:2	0/1:123,51:31:174:0.293:2	0/1:91,35:31:126:0.278:2	0/1:123,37:32:160:0.231:2	0/1:107,46:32:153:0.301:2	0/1:154,26:33:180:0.144:2	0/1:126,61:32:187:0.326:2	0/1:116,24:32:140:0.171:2	0/1:141,30:32:171:0.175:2
chr1	16915527	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,5:32:140:0.036:2	./.
chr1	16915551	rs202151903	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,5:32:117:0.043:2	./.	./.	./.	./.	./.
chr1	16918351	rs200182673	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,9:32:99:0.091:2
chr1	16918397	rs201111313	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,4:33:27:0.148:2	./.	./.	./.	./.	./.	./.
chr1	16918424	rs9730077	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:71,18:33:89:0.202:2	0/1:63,9:33:72:0.125:2	./.	0/1:86,11:32:97:0.113:2	./.	./.	0/1:37,11:33:48:0.229:2	0/1:55,5:32:60:0.083:2	0/1:104,7:34:111:0.063:2	0/1:106,5:34:111:0.045:2	0/1:103,20:33:123:0.163:2
chr1	16918465	rs3897296	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,5:34:66:0.077:2	./.	./.	./.	./.	0/1:67,11:32:78:0.141:2	./.	0/1:73,5:34:78:0.064:2	0/1:88,6:33:94:0.064:2	0/1:80,8:32:88:0.091:2	0/1:109,7:34:116:0.060:2
chr1	16918473	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,6:31:75:0.080:2	./.	./.	0/1:92,4:32:96:0.042:2	0/1:77,6:32:83:0.072:2	0/1:118,5:30:123:0.041:2
chr1	16918498	rs11583018	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,5:31:21:0.238:2	./.	./.	0/1:59,6:28:65:0.092:2	./.	./.	./.	./.	./.
chr1	16918502	rs3925698	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,36:30:58:0.621:2	0/1:14,27:28:41:0.659:2	0/1:5,15:29:20:0.750:2	0/1:22,48:30:70:0.686:2	0/1:26,37:30:64:0.587:2	0/1:34,28:29:62:0.452:2	0/1:27,37:30:64:0.578:2	0/1:46,39:30:85:0.459:2	0/1:8,74:30:83:0.902:2	0/1:27,39:30:66:0.591:2	0/1:36,78:29:114:0.684:2
chr1	17248500	rs6683035	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,61:28:89:0.685:2	0/1:26,33:28:59:0.559:2	0/1:4,3:30:7:0.429:2	0/1:76,45:28:121:0.372:2	0/1:80,29:29:109:0.266:2	0/1:108,65:28:174:0.376:2	0/1:42,40:28:82:0.488:2	0/1:66,89:28:155:0.574:2	0/1:68,59:29:127:0.465:2	0/1:1,59:28:60:0.983:2	0/1:38,41:28:79:0.519:2
chr1	17248532	rs6586566	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:32:81:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,117:32:117:1.00:2	0/1:0,110:31:110:1.00:2	0/1:0,174:32:174:1.00:2	0/1:0,73:33:73:1.00:2	0/1:0,150:32:150:1.00:2	0/1:0,144:33:144:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,78:33:78:1.00:2
chr1	17250836	rs57174186	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,8:29:47:0.170:2	0/1:22,5:27:27:0.185:2	./.	0/1:23,18:29:41:0.439:2	0/1:36,12:28:48:0.250:2	0/1:38,11:29:49:0.224:2	0/1:22,17:29:39:0.436:2	./.	0/1:22,18:32:41:0.450:2	./.	./.
chr1	17256454	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,6:31:27:0.222:2	./.	./.	./.
chr1	17256455	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,6:30:25:0.240:2	./.	./.	./.
chr1	17256477	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,6:32:15:0.400:2	./.	./.	./.
chr1	17263290	rs57442576	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,6:33:15:0.400:2	0/1:35,18:32:53:0.340:2	./.	./.	./.	./.	./.	./.	0/1:9,18:32:27:0.667:2
chr1	17264920	rs4463721	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:109,27:30:136:0.199:2	0/1:49,24:31:73:0.329:2	0/1:16,9:29:25:0.360:2	0/1:117,40:30:157:0.255:2	0/1:122,59:31:182:0.326:2	0/1:87,91:30:178:0.511:2	0/1:137,50:31:187:0.267:2	0/1:127,49:31:176:0.278:2	0/1:79,87:30:167:0.524:2	./.	./.
chr1	17264939	rs4558023	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:93,32:29:125:0.256:2	0/1:48,21:28:69:0.304:2	0/1:12,9:29:22:0.429:2	0/1:108,32:29:140:0.229:2	0/1:117,55:29:172:0.320:2	0/1:96,84:29:181:0.467:2	0/1:109,50:30:159:0.314:2	0/1:119,45:29:164:0.274:2	0/1:69,95:30:164:0.579:2	./.	./.
chr1	17265560	rs9435793	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:34:3:0.667:2	./.	./.
chr1	17266536	rs9435714	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,6:31:13:0.462:2	./.	./.	./.	./.	./.
chr1	17270628	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,4:32:32:0.125:2	./.	./.	./.	./.	./.	./.
chr1	17270751	rs12025984	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.
chr1	17272077	rs140598698	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,22:30:79:0.278:2	./.	./.	./.	./.	./.	./.
chr1	17273396	rs7537468	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,7:31:20:0.350:2	0/1:8,8:32:16:0.500:2	./.	0/1:30,6:34:36:0.167:2	0/1:10,3:33:13:0.231:2	0/1:34,11:34:45:0.244:2	./.	./.	0/1:13,5:28:18:0.278:2	./.	./.
chr1	17273444	rs7545185	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,3:31:13:0.231:2	./.	./.	0/1:10,7:30:17:0.412:2	0/1:2,7:29:9:0.778:2	0/1:16,9:30:25:0.360:2	0/1:5,4:32:9:0.444:2	./.	0/1:9,13:28:22:0.591:2	./.	./.
chr1	17275337	rs143866013	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:85,17:31:102:0.167:2	0/1:69,9:32:78:0.115:2	0/1:11,5:30:16:0.313:2	./.	0/1:110,33:31:143:0.231:2	./.	0/1:82,23:30:105:0.219:2	0/1:104,26:29:130:0.200:2	./.	0/1:59,18:31:78:0.234:2	0/1:51,34:30:85:0.400:2
chr1	17275382	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,17:29:87:0.198:2	./.	./.
chr1	17277457	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:34:189:0.021:2	./.	./.
chr1	17277485	rs3895543	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:29:110:0.036:2
chr1	17277573	rs3969856	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:34:89:0.045:2	./.	./.
chr1	17280821	rs6669627	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,11:30:118:0.093:2	./.	0/1:108,10:32:118:0.085:2	./.	0/1:101,6:31:107:0.056:2	./.	./.	0/1:86,10:33:96:0.104:2
chr1	17282573	rs2273114	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,42:32:80:0.525:2	./.	./.	./.	./.	./.	./.
chr1	17295679	rs4920574	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,84:31:84:1.00:2	0/1:0,63:32:63:1.00:2	0/1:7,3:32:10:0.300:2	0/1:58,36:31:94:0.383:2	0/1:0,68:31:68:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,63:31:63:1.00:2	0/1:1,82:32:83:0.988:2	0/1:46,26:32:72:0.361:2
chr1	17296882	rs41303881	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,27:32:49:0.551:2	./.	./.	./.	./.	./.	./.	./.
chr1	17297132	rs145138931	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,37:31:96:0.385:2	./.	./.
chr1	17301448	rs2235933	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:27,10:28:38:0.270:2	0/1:16,17:33:33:0.515:2	0/1:2,3:29:5:0.600:2	./.	./.	./.	0/1:43,29:32:72:0.403:2	./.	0/1:30,31:32:61:0.508:2	0/1:0,56:32:56:1.00:2	./.
chr1	17301780	rs761422	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:63,59:29:122:0.484:2	0/1:45,28:29:73:0.384:2	./.	0/1:85,72:29:157:0.459:2	0/1:96,75:29:172:0.439:2	./.	0/1:101,91:29:192:0.474:2	0/1:117,76:29:193:0.394:2	0/1:93,62:30:155:0.400:2	./.	0/1:65,55:29:120:0.458:2
chr1	17303361	rs143978513	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,28:33:48:0.583:2	./.	./.	0/1:21,23:32:44:0.523:2
chr1	17312743	rs3170740	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,11:31:26:0.423:2	0/1:7,12:31:19:0.632:2	./.	0/1:9,8:31:17:0.471:2	0/1:5,17:30:22:0.773:2	0/1:0,25:31:25:1.00:2	0/1:0,9:31:10:1.00:2	0/1:5,11:31:16:0.688:2	0/1:11,12:32:23:0.522:2	./.	0/1:7,6:31:13:0.462:2
chr1	17313343	rs9435659	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,23:30:47:0.489:2	0/1:13,25:31:38:0.658:2	./.	0/1:51,55:31:106:0.519:2	0/1:44,51:29:95:0.537:2	0/1:0,97:31:97:1.00:2	0/1:0,111:31:111:1.00:2	0/1:36,54:32:90:0.600:2	0/1:41,43:31:84:0.512:2	./.	0/1:35,31:31:67:0.470:2
chr1	17313654	rs761421	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,13:30:22:0.591:2	0/1:5,11:32:16:0.688:2	./.	0/1:9,14:29:23:0.609:2	0/1:11,12:29:23:0.522:2	0/1:1,25:29:26:0.962:2	0/1:1,22:29:23:0.957:2	0/1:9,8:28:17:0.471:2	0/1:16,8:31:24:0.333:2	./.	0/1:7,5:31:12:0.417:2
chr1	17314702	rs3738815	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:44,39:32:83:0.470:2	0/1:26,24:31:50:0.480:2	0/1:5,10:32:15:0.667:2	./.	0/1:71,57:31:128:0.445:2	./.	./.	./.	0/1:54,54:31:109:0.500:2	0/1:0,65:32:65:1.00:2	./.
chr1	17314942	rs9435662	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:48,37:31:85:0.435:2	0/1:30,15:31:45:0.333:2	./.	0/1:68,53:31:121:0.438:2	0/1:82,69:30:152:0.457:2	0/1:1,119:30:120:0.992:2	0/1:1,125:30:126:0.992:2	0/1:67,66:31:133:0.496:2	0/1:44,48:31:92:0.522:2	./.	0/1:53,49:31:102:0.480:2
chr1	17319011	rs2076603	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:59,64:32:123:0.520:2	0/1:32,26:32:58:0.448:2	./.	0/1:60,65:31:125:0.520:2	0/1:75,95:31:170:0.559:2	0/1:0,126:32:126:1.00:2	0/1:9,182:31:191:0.953:2	0/1:106,89:32:195:0.456:2	0/1:55,58:32:113:0.513:2	./.	0/1:74,66:30:140:0.471:2
chr1	17330849	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:33:177:0.023:2
chr1	17380497	rs2746462	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,51:29:53:0.962:2	0/1:0,43:29:44:1.00:2	0/1:1,8:30:9:0.889:2	0/1:65,40:29:105:0.381:2	0/1:0,52:28:52:1.00:2	0/1:3,82:28:85:0.965:2	0/1:0,35:28:35:1.00:2	0/1:38,37:29:75:0.493:2	0/1:2,63:29:65:0.969:2	0/1:2,59:29:61:0.967:2	0/1:15,26:29:41:0.634:2
chr1	17396592	rs11581590	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,48:30:102:0.471:2	./.	./.	./.	./.	./.
chr1	17396703	rs2076595	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,21:33:52:0.404:2	0/1:10,13:32:23:0.565:2	./.	0/1:59,60:32:119:0.504:2	0/1:84,73:33:157:0.465:2	0/1:0,107:32:107:1.00:2	0/1:1,123:33:124:0.992:2	0/1:65,58:32:123:0.472:2	0/1:62,41:32:103:0.398:2	0/1:39,48:33:87:0.552:2	0/1:40,33:33:73:0.452:2
chr1	17402255	rs3818032	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,24:31:56:0.429:2	0/1:24,11:31:35:0.314:2	./.	0/1:44,42:31:86:0.488:2	0/1:54,55:30:110:0.505:2	0/1:0,112:31:112:1.00:2	0/1:2,111:31:113:0.982:2	0/1:40,82:31:124:0.672:2	0/1:53,52:32:105:0.495:2	0/1:36,43:32:79:0.544:2	0/1:49,45:30:95:0.479:2
chr1	17405809	rs2057096	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,16:30:31:0.533:2	0/1:15,6:31:21:0.286:2	./.	0/1:17,25:31:42:0.595:2	0/1:20,17:29:37:0.459:2	0/1:1,36:31:37:0.973:2	0/1:0,28:31:28:1.00:2	0/1:29,25:31:54:0.463:2	0/1:31,18:32:49:0.367:2	0/1:21,17:30:38:0.447:2	0/1:17,23:33:40:0.575:2
chr1	17405814	rs148233687	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,17:31:38:0.447:2	./.
chr1	17411165	rs187500985	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,23:32:55:0.418:2	./.	./.	./.	./.	./.	./.
chr1	17413121	rs2076615	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:30:9:0.556:2	./.	0/1:31,15:32:46:0.326:2	./.	./.	./.	./.	0/1:10,22:32:32:0.688:2	./.
chr1	17419024	rs11203297	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,14:29:26:0.538:2	./.	./.	0/1:30,24:30:54:0.444:2	./.	0/1:20,12:30:32:0.375:2	./.
chr1	17531726	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:33:72:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	17550121	rs2293912	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,29:32:85:0.341:2	./.	./.	./.	0/1:48,61:32:109:0.560:2	0/1:0,80:33:80:1.00:2	./.	./.
chr1	17555508	rs2977234	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,26:32:26:1.00:2	0/1:1,17:32:18:0.944:2	./.	0/1:25,17:33:42:0.405:2	0/1:27,8:33:35:0.229:2	0/1:30,18:32:48:0.375:2	./.	0/1:0,45:32:45:1.00:2	./.	0/1:0,14:32:14:1.00:2	0/1:0,19:32:19:1.00:2
chr1	17557133	rs3003406	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	0/1:7,9:30:16:0.563:2	0/1:0,20:29:20:1.00:2	./.	0/1:19,13:30:32:0.406:2	./.	./.	0/1:0,21:29:21:1.00:2
chr1	17575645	rs3763589	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,60:30:113:0.531:2	./.	./.	./.
chr1	17586134	rs3750300	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,73:29:174:0.420:2	./.	./.	./.
chr1	17593316	rs2272629	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,61:31:133:0.459:2	./.	./.	./.
chr1	17597655	rs2293916	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,46:28:119:0.387:2	./.	./.	./.	./.	0/1:1,104:30:105:0.990:2
chr1	17601165	rs11585357	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:29:11:1.00:2	./.	./.	./.	./.	./.	./.	0/1:38,25:32:63:0.397:2	./.
chr1	17609448	rs2293920	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:1,47:32:48:0.979:2	./.	0/1:0,132:32:132:1.00:2	./.	0/1:1,137:32:138:0.993:2	0/1:91,76:32:167:0.455:2	./.	0/1:70,59:33:129:0.457:2	0/1:65,42:32:107:0.393:2	0/1:3,85:32:88:0.966:2
chr1	17657534	rs11203366	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,5:32:5:1.00:2	0/1:35,46:31:81:0.568:2	./.	0/1:0,78:32:78:1.00:2	./.	0/1:0,61:32:61:1.00:2	0/1:25,28:33:53:0.528:2	0/1:0,40:32:40:1.00:2	0/1:0,55:32:55:1.00:2
chr1	17657616	rs11203367	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:29:75:1.00:2	0/1:0,54:29:54:1.00:2	0/1:0,12:31:12:1.00:2	0/1:65,52:29:117:0.444:2	./.	0/1:1,132:30:133:0.992:2	./.	0/1:2,132:30:134:0.985:2	0/1:43,78:29:121:0.645:2	0/1:2,63:30:65:0.969:2	0/1:0,97:29:97:1.00:2
chr1	17660499	rs874881	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:30:53:1.00:2	0/1:0,30:28:30:1.00:2	0/1:0,14:30:14:1.00:2	0/1:33,41:30:74:0.554:2	./.	0/1:0,72:29:72:1.00:2	./.	0/1:0,72:29:72:1.00:2	0/1:42,33:30:75:0.440:2	0/1:0,51:29:51:1.00:2	0/1:0,70:28:70:1.00:2
chr1	17660890	rs12737739	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,22:31:22:1.00:2	./.	0/1:18,16:31:34:0.471:2	./.	0/1:1,29:31:30:0.967:2	./.	0/1:0,11:30:11:1.00:2	0/1:18,19:32:37:0.514:2	0/1:8,11:30:19:0.579:2	0/1:0,39:30:39:1.00:2
chr1	17662639	rs2240340	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:32:37:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,5:32:5:1.00:2	0/1:24,25:33:49:0.510:2	./.	0/1:0,35:33:35:1.00:2	./.	0/1:0,38:32:38:1.00:2	0/1:33,13:33:46:0.283:2	0/1:0,35:32:35:1.00:2	0/1:1,29:33:30:0.967:2
chr1	17662662	rs1748033	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:32:49:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,8:33:8:1.00:2	0/1:37,29:33:66:0.439:2	./.	0/1:0,51:32:51:1.00:2	./.	0/1:0,59:32:59:1.00:2	0/1:48,22:34:70:0.314:2	0/1:0,46:32:46:1.00:2	0/1:0,55:32:55:1.00:2
chr1	17668563	rs35903413	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,39:31:58:0.672:2	./.
chr1	17674537	rs2240335	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,48:31:48:1.00:2	0/1:0,14:32:14:1.00:2	./.	0/1:20,28:32:48:0.583:2	./.	0/1:1,38:31:39:0.974:2	./.	0/1:0,36:31:36:1.00:2	0/1:30,19:32:49:0.388:2	0/1:22,18:33:40:0.450:2	0/1:0,22:31:22:1.00:2
chr1	17681144	rs35240185	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,8:29:21:0.381:2	0/1:22,23:29:45:0.511:2
chr1	17690106	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,62:29:141:0.440:2
chr1	17707601	rs6669650	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,55:30:116:0.474:2
chr1	17708528	rs61766772	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,94:33:94:1.00:2	0/1:44,42:33:86:0.488:2	./.	./.
chr1	17720545	rs12073549	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,69:32:165:0.418:2	0/1:115,62:32:177:0.350:2	./.	./.	./.	./.
chr1	17739585	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,4:33:107:0.037:2	./.	./.	./.	./.	./.	./.
chr1	17739586	rs942457	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,87:31:87:1.00:2	0/1:0,58:32:58:1.00:2	0/1:6,8:32:14:0.571:2	./.	./.	0/1:49,38:30:87:0.437:2	0/1:55,58:31:113:0.513:2	./.	0/1:43,56:32:99:0.566:2	./.	./.
chr1	17739597	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,4:32:109:0.037:2	./.	./.	./.	./.	./.	./.
chr1	17739638	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,4:31:97:0.041:2	./.	./.	./.	./.	./.	./.
chr1	17747256	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,5:30:190:0.026:2	./.	./.	./.	./.	./.
chr1	17907108	rs35812446	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:30:14:0.571:2	./.	./.	./.	./.	./.	./.	./.	0/1:47,39:29:86:0.453:2
chr1	17934347	rs145133878	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,24:32:56:0.429:2	./.	./.
chr1	17949562	rs55693639	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,72:31:187:0.387:2	./.	./.	0/1:57,33:30:90:0.367:2
chr1	17961345	rs34725104	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:36,43:30:79:0.544:2	0/1:19,14:32:33:0.424:2	./.	./.	0/1:47,37:29:84:0.440:2	./.	./.	0/1:70,61:30:131:0.466:2	./.	0/1:42,38:30:80:0.475:2	0/1:31,34:30:65:0.523:2
chr1	17981184	rs35255680	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,65:28:65:1.00:2	./.	0/1:38,41:30:79:0.519:2	0/1:42,39:28:81:0.481:2	./.	0/1:32,26:28:58:0.448:2
chr1	17982545	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:30:83:0.048:2	./.	./.	./.	./.
chr1	17982559	rs867984	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,57:31:59:0.966:2	./.	0/1:37,16:30:53:0.302:2	0/1:26,28:33:54:0.519:2	./.	0/1:17,25:33:42:0.595:2
chr1	17982572	rs374154488	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,19:30:47:0.404:2	./.	./.	./.	./.	./.	./.
chr1	17991052	rs6695710	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,34:28:34:1.00:2	0/1:0,18:28:18:1.00:2	./.	0/1:0,34:28:34:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,24:29:24:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,18:29:18:1.00:2
chr1	18014131	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,6:31:103:0.058:2	./.	./.	./.	./.	./.
chr1	18023365	rs2270978	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,130:32:130:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,169:31:169:1.00:2	0/1:0,148:31:148:1.00:2	./.	0/1:0,164:32:164:1.00:2	0/1:90,85:32:175:0.486:2	0/1:91,77:32:168:0.458:2	0/1:0,125:32:125:1.00:2	0/1:75,84:32:159:0.528:2
chr1	18023509	rs2270977	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:33:35:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,20:30:20:1.00:2	./.	0/1:0,22:31:22:1.00:2	0/1:25,19:32:44:0.432:2	0/1:31,12:32:43:0.279:2	0/1:0,28:32:28:1.00:2	0/1:26,13:32:39:0.333:2
chr1	18023606	rs375266292	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:31:5:0.800:2	./.
chr1	18023690	rs2270976	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,4:29:4:1.00:2	0/1:0,5:31:5:1.00:2	./.	0/1:0,8:29:8:1.00:2	0/1:0,9:28:9:1.00:2	./.	./.	0/1:3,8:28:11:0.727:2	0/1:3,4:31:7:0.571:2	./.	0/1:0,3:27:3:1.00:2
chr1	18149510	rs694214	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:12,13:31:25:0.520:2	0/1:13,12:31:25:0.480:2	./.	0/1:22,17:30:39:0.436:2	./.	./.	./.	0/1:23,43:31:66:0.652:2	0/1:28,22:31:50:0.440:2	0/1:15,17:32:32:0.531:2	./.
chr1	18149566	rs2296035	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,20:30:43:0.465:2	0/1:15,18:31:33:0.545:2	0/1:6,4:32:10:0.400:2	0/1:26,36:31:62:0.581:2	./.	./.	0/1:28,35:30:63:0.556:2	0/1:30,50:30:80:0.625:2	0/1:0,62:31:62:1.00:2	0/1:18,27:32:45:0.600:2	./.
chr1	18152582	rs478698	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,4:30:10:0.400:2	./.	0/1:6,5:31:11:0.455:2
chr1	18152939	rs16830789	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:188,5:31:193:0.026:2	./.	./.	./.	./.	./.	./.
chr1	18704829	rs72940712	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,15:28:27:0.556:2	./.	./.	./.
chr1	18807536	rs7512414	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,16:30:23:0.696:2	0/1:88,96:31:184:0.522:2	./.	./.	0/1:110,77:31:187:0.412:2	./.	./.	./.	./.
chr1	18807620	rs34109355	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,10:29:17:0.588:2	0/1:75,60:29:135:0.444:2	./.	./.	0/1:83,77:29:160:0.481:2	./.	./.	./.	./.
chr1	18807755	rs34976233	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,47:32:86:0.553:2	./.	./.	0/1:43,50:31:93:0.538:2	./.	./.	./.	./.
chr1	18807781	rs35013594	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,47:30:86:0.547:2	./.	./.	0/1:53,59:30:112:0.527:2	./.	./.	./.	./.
chr1	18807897	rs2992755	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,31:30:46:0.674:2	0/1:18,9:28:27:0.333:2	0/1:0,2:31:2:1.00:2	0/1:43,31:30:74:0.419:2	0/1:0,62:30:62:1.00:2	0/1:0,78:30:78:1.00:2	0/1:48,46:30:94:0.489:2	./.	0/1:0,74:31:74:1.00:2	0/1:33,31:31:64:0.484:2	0/1:0,59:29:59:1.00:2
chr1	18807938	rs2992754	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,15:28:29:0.517:2	./.	./.	./.	0/1:18,15:28:34:0.455:2	./.	0/1:20,15:27:35:0.429:2
chr1	18807953	rs11261022	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:13,11:33:24:0.458:2	0/1:13,3:33:16:0.188:2	0/1:0,2:32:2:1.00:2	./.	0/1:12,8:32:20:0.400:2	0/1:0,27:32:27:1.00:2	./.	./.	0/1:15,14:32:29:0.483:2	0/1:16,11:33:27:0.407:2	0/1:14,15:32:29:0.517:2
chr1	18808056	rs7515150	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:33:5:0.800:2	0/1:14,17:33:31:0.548:2	./.	./.	0/1:28,17:32:45:0.378:2	./.	./.	./.	./.
chr1	18808069	rs7528572	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:32:5:1.00:2	0/1:14,15:33:29:0.517:2	./.	./.	0/1:32,18:32:50:0.360:2	./.	./.	./.	./.
chr1	18808292	rs2992753	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,17:31:45:0.378:2	0/1:18,9:31:27:0.333:2	0/1:0,6:31:6:1.00:2	0/1:44,26:32:70:0.371:2	0/1:1,36:31:37:0.973:2	0/1:2,52:31:54:0.963:2	0/1:32,21:31:53:0.396:2	./.	0/1:0,54:32:54:1.00:2	0/1:28,14:30:42:0.333:2	0/1:0,44:31:44:1.00:2
chr1	18808465	rs3007718	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,10:30:22:0.455:2	0/1:7,3:32:10:0.300:2	0/1:0,2:32:2:1.00:2	0/1:15,11:29:26:0.423:2	0/1:0,30:29:30:1.00:2	0/1:0,25:30:25:1.00:2	0/1:10,5:29:15:0.333:2	./.	0/1:0,20:32:20:1.00:2	0/1:7,4:28:11:0.364:2	0/1:0,18:29:18:1.00:2
chr1	18808526	rs2992752	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:34:9:1.00:2	0/1:14,15:32:30:0.517:2	0/1:0,26:32:26:1.00:2	0/1:0,17:34:17:1.00:2	./.	./.	0/1:0,17:33:17:1.00:2	0/1:10,3:28:13:0.231:2	0/1:0,5:33:5:1.00:2
chr1	18808711	rs2992751	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,6:31:11:0.545:2	./.	0/1:5,6:32:11:0.545:2
chr1	18809896	rs2992745	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,15:31:43:0.349:2	./.	0/1:0,5:31:5:1.00:2	0/1:18,26:31:44:0.591:2	0/1:0,19:29:19:1.00:2	0/1:0,24:31:24:1.00:2	0/1:8,18:30:26:0.692:2	./.	0/1:0,19:32:19:1.00:2	0/1:19,7:31:26:0.269:2	0/1:1,26:31:27:0.963:2
chr1	18809916	rs12061708	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:31,15:29:46:0.326:2	0/1:13,5:31:18:0.278:2	./.	./.	0/1:14,11:32:25:0.440:2	0/1:0,34:31:34:1.00:2	./.	./.	0/1:15,16:32:31:0.516:2	0/1:18,7:32:25:0.280:2	0/1:22,13:32:35:0.371:2
chr1	18810344	rs2992740	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,11:28:25:0.440:2	0/1:6,9:30:15:0.600:2	./.	./.	0/1:0,13:27:13:1.00:2	0/1:2,20:29:22:0.909:2	0/1:9,4:29:13:0.308:2	./.	0/1:0,28:31:28:1.00:2	./.	0/1:0,14:30:14:1.00:2
chr1	18810349	rs6667069	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:33:12:0.250:2	./.	./.	./.	./.	./.	./.	./.
chr1	18810484	rs1889861	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,16:30:49:0.327:2	./.	./.	./.	0/1:45,31:33:76:0.408:2	./.	0/1:40,45:31:85:0.529:2
chr1	18810486	rs1889862	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,16:31:49:0.327:2	./.	./.	./.	0/1:46,31:33:77:0.403:2	./.	0/1:40,45:31:85:0.529:2
chr1	18810722	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:32:77:0.052:2	./.	./.	./.
chr1	18811121	rs35259167	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:33:6:0.500:2	0/1:18,21:31:39:0.538:2	./.	./.	0/1:16,7:27:23:0.304:2	./.	./.	./.	./.
chr1	18811305	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:33:157:0.025:2	./.	./.	./.	./.
chr1	18811668	rs3007719	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,16:32:30:0.533:2	0/1:9,4:32:13:0.308:2	0/1:0,8:34:8:1.00:2	0/1:19,14:32:33:0.424:2	0/1:0,41:31:41:1.00:2	0/1:0,34:33:34:1.00:2	0/1:9,21:32:30:0.700:2	./.	0/1:0,34:32:34:1.00:2	0/1:20,16:31:36:0.444:2	0/1:0,36:32:36:1.00:2
chr1	18811854	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:31:85:0.047:2	./.	./.	./.	./.	./.
chr1	18812176	rs872355	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:34,40:32:74:0.541:2	0/1:23,15:32:38:0.395:2	0/1:5,7:31:12:0.583:2	./.	0/1:29,18:31:47:0.383:2	0/1:2,67:30:69:0.971:2	./.	./.	0/1:38,35:33:73:0.479:2	0/1:24,18:32:42:0.429:2	0/1:48,34:33:82:0.415:2
chr1	18812285	rs77256928	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,47:32:132:0.356:2	./.	./.
chr1	18812316	rs708088	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,29:32:60:0.483:2	0/1:27,29:33:56:0.518:2	0/1:0,9:32:9:1.00:2	0/1:56,47:32:103:0.456:2	0/1:35,37:32:72:0.514:2	0/1:0,94:32:94:1.00:2	0/1:46,25:32:71:0.352:2	./.	0/1:64,35:33:99:0.354:2	0/1:36,37:33:73:0.507:2	0/1:59,42:32:101:0.416:2
chr1	19018270	rs141048856	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,52:31:89:0.584:2	./.	./.	./.	./.	./.	./.
chr1	19018405	rs2076020	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,26:31:46:0.565:2	0/1:7,10:33:17:0.588:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	19018432	rs2076019	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,17:29:35:0.486:2	0/1:9,5:28:14:0.357:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	19027239	rs2743201	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:34,21:27:57:0.382:2	0/1:23,14:27:37:0.378:2	./.	./.	0/1:46,35:27:81:0.432:2	./.	0/1:31,16:26:48:0.340:2	./.	./.	./.	./.
chr1	19166243	rs12075191	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,183:32:183:1.00:2	./.	./.
chr1	19166294	rs12033832	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:110,83:33:193:0.430:2	0/1:61,53:32:114:0.465:2	./.	0/1:94,80:33:174:0.460:2	0/1:95,94:32:189:0.497:2	./.	0/1:193,5:34:198:0.025:2	./.	./.	0/1:2,180:32:182:0.989:2	0/1:2,181:33:183:0.989:2
chr1	19166893	rs6662276	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,97:30:99:1.00:2	./.	./.
chr1	19166925	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:33:162:0.025:2	./.	./.
chr1	19175846	rs28374389	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,55:30:55:1.00:2	./.	./.	./.	./.
chr1	19181015	rs34447754	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,35:31:35:1.00:2	0/1:0,32:31:32:1.00:2	0/1:28,23:32:51:0.451:2	./.	0/1:24,18:32:42:0.429:2	./.	0/1:10,22:31:32:0.688:2	./.
chr1	19181082	rs28470550	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,67:31:68:0.985:2	0/1:2,81:30:83:0.976:2	0/1:36,59:30:95:0.621:2	./.	0/1:45,38:29:83:0.458:2	./.	0/1:23,29:30:52:0.558:2	./.
chr1	19181393	rs35874116	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,45:30:45:1.00:2	0/1:3,68:31:71:0.958:2	0/1:33,28:31:61:0.459:2	./.	0/1:37,33:31:70:0.471:2	./.	0/1:33,27:31:60:0.450:2	./.
chr1	19184077	rs68081213	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,89:31:90:0.989:2	0/1:2,89:31:91:0.978:2	0/1:63,39:30:102:0.382:2	./.	0/1:73,62:31:135:0.459:2	./.	0/1:44,27:31:71:0.380:2	./.
chr1	19186129	rs9701796	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:32:72:1.00:2	0/1:2,47:32:49:0.959:2	0/1:0,12:31:12:1.00:2	0/1:0,89:33:89:1.00:2	0/1:1,71:32:72:0.986:2	0/1:54,35:33:89:0.393:2	0/1:46,45:32:91:0.495:2	./.	0/1:49,41:33:90:0.456:2	0/1:29,47:32:76:0.618:2	0/1:1,90:33:91:0.989:2
chr1	19199448	rs61757683	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,10:32:19:0.526:2
chr1	19200988	rs61749348	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,9:32:20:0.450:2	./.	./.
chr1	19201919	rs6695033	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,51:30:127:0.405:2	./.	./.
chr1	19201928	rs2230709	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,69:31:174:0.397:2	0/1:93,94:31:187:0.503:2	0/1:53,64:32:117:0.547:2	./.	./.
chr1	19201956	rs2230708	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:29:71:1.00:2	0/1:0,38:30:38:1.00:2	0/1:8,7:28:15:0.467:2	0/1:0,126:30:127:1.00:2	0/1:0,134:29:134:1.00:2	0/1:68,52:30:120:0.433:2	0/1:143,4:31:147:0.027:2	0/1:92,68:30:160:0.425:2	0/1:60,46:31:106:0.434:2	0/1:0,64:30:64:1.00:2	0/1:0,112:29:112:1.00:2
chr1	19202896	rs2230707	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,42:31:42:1.00:2	0/1:2,29:30:31:0.935:2	0/1:29,14:30:43:0.326:2	./.	0/1:38,27:31:65:0.415:2	./.	0/1:17,15:31:32:0.469:2	./.
chr1	19202917	rs7550938	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,20:27:20:1.00:2	0/1:0,16:27:16:1.00:2	./.	0/1:0,30:26:30:1.00:2	0/1:1,23:24:24:0.958:2	0/1:26,11:26:37:0.297:2	./.	0/1:29,22:27:51:0.431:2	./.	0/1:0,24:26:24:1.00:2	0/1:1,28:26:29:0.966:2
chr1	19202926	rs2230706	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:26:17:1.00:2	0/1:0,15:28:15:1.00:2	./.	0/1:0,25:26:25:1.00:2	0/1:1,17:21:18:0.944:2	0/1:20,13:27:33:0.394:2	./.	0/1:29,15:26:44:0.341:2	./.	0/1:0,19:25:19:1.00:2	0/1:0,23:25:24:1.00:2
chr1	19203961	rs41310410	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,5:32:20:0.250:2
chr1	19203997	rs2230705	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,47:33:47:1.00:2	0/1:0,30:33:30:1.00:2	0/1:29,14:32:43:0.326:2	0/1:3,9:31:12:0.750:2	0/1:0,22:32:22:1.00:2	0/1:0,29:34:29:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,22:32:22:1.00:2
chr1	19235085	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:35:177:0.023:2	./.	./.
chr1	19246266	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:33:98:0.041:2
chr1	19401405	rs2281748	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,42:32:43:0.977:2	0/1:0,24:32:24:1.00:2	./.	./.	0/1:0,37:32:37:1.00:2	0/1:34,22:32:56:0.393:2	0/1:28,20:31:48:0.417:2	0/1:44,28:32:72:0.389:2	0/1:26,28:33:54:0.519:2	0/1:24,23:33:47:0.489:2	0/1:23,16:32:39:0.410:2
chr1	19411129	rs1043905	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,169:30:169:1.00:2	0/1:3,82:29:85:0.965:2	0/1:0,28:29:28:1.00:2	0/1:1,182:30:183:0.995:2	0/1:0,185:29:185:1.00:2	0/1:99,91:29:190:0.479:2	0/1:120,75:29:195:0.385:2	0/1:0,189:29:189:1.00:2	0/1:96,101:30:197:0.513:2	0/1:89,65:29:154:0.422:2	0/1:0,187:28:187:1.00:2
chr1	19413261	rs12584	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,169:30:174:0.971:2	0/1:0,115:31:115:1.00:2	0/1:0,26:30:26:1.00:2	0/1:1,157:30:158:0.994:2	0/1:2,176:30:178:0.989:2	0/1:74,100:30:175:0.575:2	0/1:95,81:30:176:0.460:2	0/1:1,188:30:189:0.995:2	0/1:86,78:31:164:0.476:2	0/1:99,82:30:181:0.453:2	0/1:1,159:30:162:0.994:2
chr1	19415304	rs1043899	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:31:89:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,116:30:116:1.00:2	0/1:3,121:30:124:0.976:2	0/1:79,47:31:126:0.373:2	0/1:82,54:31:136:0.397:2	0/1:1,170:31:171:0.994:2	0/1:62,71:31:133:0.534:2	0/1:58,49:31:107:0.458:2	0/1:0,117:30:117:1.00:2
chr1	19420560	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:34:144:0.028:2	./.
chr1	19433449	rs6426677	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,128:31:132:0.970:2	0/1:0,63:30:63:1.00:2	0/1:0,11:30:11:1.00:2	0/1:1,148:30:150:0.993:2	0/1:0,136:30:136:1.00:2	0/1:70,68:30:138:0.493:2	0/1:56,61:31:117:0.521:2	0/1:2,117:30:120:0.983:2	0/1:75,59:32:134:0.440:2	0/1:77,61:29:138:0.442:2	0/1:2,119:31:121:0.983:2
chr1	19440305	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,4:31:104:0.038:2	./.	./.	./.	./.	./.	./.
chr1	19447752	rs78347051	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:107,26:24:133:0.195:2	./.	0/1:15,5:18:20:0.250:2	0/1:95,32:18:127:0.252:2	0/1:95,35:19:130:0.269:2	0/1:99,28:20:127:0.220:2	0/1:95,48:17:143:0.336:2	0/1:97,37:18:134:0.276:2	0/1:117,21:23:138:0.152:2	0/1:103,36:19:139:0.259:2	0/1:86,35:23:121:0.289:2
chr1	19447819	rs35802543	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,55:29:150:0.367:2	./.	0/1:68,72:29:140:0.514:2	./.	./.	./.
chr1	19447843	rs1044010	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,171:32:171:1.00:2	0/1:1,102:32:103:0.990:2	0/1:0,24:32:24:1.00:2	0/1:1,184:33:185:0.995:2	0/1:1,180:32:182:0.994:2	0/1:109,85:33:194:0.438:2	0/1:103,90:33:193:0.466:2	0/1:0,190:33:190:1.00:2	0/1:90,82:33:172:0.477:2	0/1:88,101:33:189:0.534:2	0/1:0,175:33:175:1.00:2
chr1	19454741	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,61:33:102:0.598:2	./.
chr1	19468201	rs145780544	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,44:33:97:0.458:2	./.	./.
chr1	19477222	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:29:56:0.071:2	./.	./.	./.	./.
chr1	19487572	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:32:126:0.032:2	./.	./.	./.
chr1	19490822	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,93:31:191:0.487:2	./.	./.	./.	./.	./.	./.	./.
chr1	19499560	rs16862578	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:32:5:0.800:2	0/1:0,57:32:57:1.00:2	./.	./.	./.	0/1:31,28:32:59:0.475:2	./.	./.	0/1:46,38:33:84:0.452:2
chr1	19499954	rs952790	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,37:31:73:0.507:2	./.	0/1:26,28:30:54:0.519:2	./.	./.	./.
chr1	19510394	rs3762396	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,81:33:82:0.988:2	0/1:0,47:32:47:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,144:33:144:1.00:2	0/1:2,87:32:90:0.978:2	0/1:51,44:32:95:0.463:2	0/1:51,48:33:99:0.485:2	0/1:0,114:33:114:1.00:2	0/1:63,53:34:116:0.457:2	0/1:40,40:33:80:0.500:2	0/1:0,128:33:128:1.00:2
chr1	19565338	rs709682	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,13:30:38:0.342:2	./.	0/1:26,12:32:38:0.316:2	./.	./.	./.
chr1	19565344	rs709683	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:13,24:33:37:0.649:2	0/1:13,7:31:20:0.350:2	0/1:0,4:33:4:1.00:2	./.	0/1:0,20:32:20:1.00:2	0/1:23,13:32:36:0.361:2	0/1:12,21:32:33:0.636:2	0/1:24,14:34:38:0.368:2	0/1:22,8:34:30:0.267:2	0/1:10,10:33:21:0.500:2	0/1:27,17:33:44:0.386:2
chr1	19566858	rs141614470	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,97:32:185:0.524:2	./.	./.	./.	./.
chr1	19566881	rs12084825	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,6:31:13:0.462:2	0/1:1,106:32:107:0.991:2	./.	./.	./.	0/1:89,71:32:160:0.444:2	./.	./.	0/1:62,37:31:99:0.374:2
chr1	19570426	rs2294944	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,40:33:86:0.465:2	./.	0/1:55,38:33:94:0.409:2	./.	./.	./.
chr1	19583636	rs1126682	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,31:31:83:0.373:2	0/1:34,35:31:69:0.507:2	./.	./.	./.	0/1:61,42:30:103:0.408:2	./.	./.	0/1:51,40:32:91:0.440:2	./.	./.
chr1	19584004	rs1042380	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,40:32:40:1.00:2	./.	0/1:18,18:32:36:0.500:2	./.	0/1:0,47:32:47:1.00:2	./.	./.	./.
chr1	19585207	rs2294939	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,49:32:118:0.415:2	./.	0/1:64,32:32:96:0.333:2	./.	./.	./.
chr1	19585239	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:32:81:0.050:2	./.
chr1	19585246	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:32:81:0.049:2	./.
chr1	19593826	rs2982534	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:180,4:32:184:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr1	19595135	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:32:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	19595137	rs2235795	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,62:32:62:1.00:2	0/1:0,33:32:33:1.00:2	0/1:6,3:31:9:0.333:2	./.	0/1:1,78:30:79:0.987:2	0/1:35,53:31:88:0.602:2	0/1:16,25:31:41:0.610:2	./.	0/1:2,67:31:69:0.971:2	0/1:1,65:32:66:0.985:2	0/1:20,21:31:41:0.512:2
chr1	19595194	rs75616155	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,7:31:11:0.636:2	0/1:1,62:32:63:0.984:2	./.	./.	./.	0/1:35,25:32:61:0.417:2	./.	./.	./.
chr1	19596091	rs146198474	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,8:32:191:0.042:2	./.	./.	./.
chr1	19596124	rs2235794	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,120:29:121:1.00:2	0/1:5,67:30:72:0.931:2	0/1:4,10:30:14:0.714:2	./.	0/1:1,146:28:147:0.993:2	0/1:61,80:28:141:0.567:2	0/1:90,64:28:155:0.416:2	./.	0/1:5,155:29:160:0.969:2	0/1:0,173:28:174:1.00:2	0/1:96,74:30:170:0.435:2
chr1	19596156	rs6665756	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,93:32:93:1.00:2	0/1:1,54:32:55:0.982:2	0/1:5,8:31:13:0.615:2	./.	0/1:1,84:30:85:0.988:2	0/1:43,51:30:94:0.543:2	0/1:60,47:31:107:0.439:2	./.	0/1:0,110:31:110:1.00:2	0/1:0,116:31:116:1.00:2	0/1:70,54:31:124:0.435:2
chr1	19600386	rs112053480	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,17:30:35:0.486:2	0/1:0,185:30:185:1.00:2	./.	./.	./.	0/1:92,93:31:185:0.503:2	./.	./.	./.
chr1	19600406	rs149246656	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,39:31:98:0.398:2
chr1	19609254	rs1738025	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,168:32:168:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,30:32:30:1.00:2	0/1:1,165:33:167:0.994:2	0/1:2,175:32:177:0.989:2	0/1:84,102:32:186:0.548:2	0/1:89,82:33:171:0.480:2	0/1:81,88:32:169:0.521:2	0/1:0,171:33:171:1.00:2	0/1:0,162:32:162:1.00:2	0/1:72,82:32:154:0.532:2
chr1	19611227	rs1065658	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,37:33:65:0.569:2	0/1:9,19:32:28:0.679:2	./.	./.	./.	0/1:42,44:33:86:0.512:2	./.	./.	./.	0/1:49,39:32:88:0.443:2	./.
chr1	19611241	rs1738023	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:32:60:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,62:33:62:1.00:2	0/1:1,59:33:60:0.983:2	0/1:38,45:33:83:0.542:2	0/1:27,21:32:48:0.438:2	0/1:39,32:32:71:0.451:2	0/1:0,73:33:73:1.00:2	0/1:1,87:33:88:0.989:2	0/1:49,36:32:85:0.424:2
chr1	19612477	rs2231198	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:46,35:32:81:0.432:2	0/1:34,14:32:48:0.292:2	./.	./.	0/1:0,92:31:92:1.00:2	./.	0/1:59,47:31:106:0.443:2	./.	0/1:44,39:32:83:0.470:2	0/1:48,46:32:94:0.489:2	0/1:58,40:31:98:0.408:2
chr1	19630782	rs148319333	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,51:30:132:0.386:2	./.	./.	./.	./.	./.
chr1	19633544	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,4:33:61:0.066:2	./.	./.	./.	./.	./.	./.
chr1	19634679	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,5:29:146:0.035:2	./.	./.	./.	./.	./.
chr1	19635011	rs1043657	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,5:30:7:0.714:2	0/1:0,65:30:65:1.00:2	./.	./.	./.	0/1:39,46:30:85:0.541:2	./.	./.	./.
chr1	19652063	rs11558390	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,35:30:60:0.583:2	./.	./.	./.	./.	0/1:35,31:32:66:0.470:2	0/1:32,48:31:80:0.600:2	./.
chr1	19652874	rs41264079	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,13:31:21:0.619:2	0/1:3,10:31:13:0.769:2	./.	./.	./.	./.	./.	./.
chr1	19775375	rs79308175	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,5:32:162:0.031:2	./.	./.	./.
chr1	19950062	rs1737428	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,15:30:33:0.455:2	0/1:13,10:30:23:0.435:2	./.	0/1:15,29:29:44:0.659:2	0/1:0,27:28:27:1.00:2	./.	./.	0/1:15,14:29:29:0.483:2	0/1:29,14:29:43:0.326:2	./.	0/1:32,16:29:48:0.333:2
chr1	19992444	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:124,4:31:128:0.031:2	./.	./.	./.	./.	./.	./.
chr1	19992513	rs1805054	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,28:31:38:0.737:2	0/1:16,23:31:39:0.590:2	./.	0/1:18,20:32:38:0.526:2	./.	./.	./.	./.
chr1	20009737	rs10917514	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,89:33:162:0.553:2	0/1:84,63:32:147:0.429:2	./.	./.	./.	./.	./.	./.
chr1	20020993	rs4370779	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:30:81:1.00:2	0/1:2,44:29:46:0.957:2	0/1:0,17:27:17:1.00:2	0/1:1,116:30:117:0.991:2	0/1:0,153:30:153:1.00:2	./.	0/1:0,148:30:148:1.00:2	0/1:101,46:30:147:0.313:2	0/1:1,93:30:94:0.989:2	0/1:66,39:29:106:0.371:2	0/1:42,31:29:73:0.425:2
chr1	20020994	rs4515815	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:31:82:1.00:2	0/1:2,44:31:46:0.957:2	0/1:0,17:29:17:1.00:2	0/1:65,50:31:115:0.435:2	0/1:81,74:31:155:0.477:2	./.	0/1:1,147:31:148:0.993:2	0/1:103,45:32:148:0.304:2	0/1:44,50:31:94:0.532:2	0/1:67,40:31:107:0.374:2	0/1:41,31:31:72:0.431:2
chr1	20066380	rs41303893	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,34:28:61:0.557:2	./.	0/1:39,21:27:60:0.350:2
chr1	20072082	rs35760408	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,36:32:88:0.409:2	./.	0/1:34,37:31:71:0.521:2
chr1	20073019	rs34281331	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,95:33:183:0.519:2	./.	0/1:79,101:32:180:0.561:2
chr1	20097822	rs11551819	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,23:31:42:0.548:2	0/1:26,9:32:35:0.257:2	./.	./.	./.	./.
chr1	20097941	rs10917536	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:14,10:29:24:0.417:2	0/1:10,7:31:17:0.412:2	./.	0/1:19,18:31:37:0.486:2	./.	0/1:0,28:29:28:1.00:2	0/1:21,15:31:36:0.417:2	./.	0/1:18,9:31:27:0.333:2	0/1:11,17:29:28:0.607:2	0/1:0,27:31:27:1.00:2
chr1	20141017	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:31:94:0.043:2	./.	./.
chr1	20141245	rs148594830	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,36:31:91:0.396:2	./.	./.	./.
chr1	20141283	rs1541184	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,15:31:35:0.429:2	./.	./.	./.	./.	./.
chr1	20141405	rs41264113	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,11:31:15:0.733:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	20141528	rs1541185	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,96:30:195:0.492:2	0/1:94,93:30:187:0.497:2	./.	./.	./.	./.
chr1	20141615	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:31:154:0.026:2	./.	./.	./.	./.
chr1	20141707	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,3:32:34:0.088:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	20246876	rs61729970	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,21:31:51:0.412:2	0/1:13,8:31:21:0.381:2	./.	./.	./.	./.	./.	./.	0/1:34,43:32:77:0.558:2	./.	./.
chr1	20304926	rs4744	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:11,9:27:20:0.450:2	0/1:5,14:30:19:0.737:2	0/1:4,3:31:7:0.429:2	./.	./.	./.	0/1:28,24:30:52:0.462:2	./.	./.	./.	./.
chr1	20411332	rs2020887	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:67,56:30:123:0.455:2	0/1:39,32:29:71:0.451:2	0/1:6,6:30:12:0.500:2	0/1:66,64:29:130:0.492:2	0/1:77,47:30:124:0.379:2	0/1:53,44:30:97:0.454:2	./.	0/1:71,68:30:140:0.489:2	0/1:112,65:29:179:0.367:2	0/1:57,62:30:119:0.521:2	./.
chr1	20442054	rs584367	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:28:10:1.00:2	./.	0/1:79,36:29:115:0.313:2	0/1:64,48:29:112:0.429:2	0/1:0,101:29:101:1.00:2	0/1:1,126:29:127:0.992:2	0/1:74,50:29:124:0.403:2	./.	0/1:52,50:27:102:0.490:2
chr1	20490518	rs6426616	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:28:10:1.00:2	0/1:0,62:30:62:1.00:2	0/1:44,48:29:92:0.522:2	0/1:53,32:30:85:0.376:2	./.	0/1:64,45:30:109:0.413:2	./.	0/1:39,32:29:71:0.451:2	0/1:55,45:29:100:0.450:2
chr1	20501582	rs12139100	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,59:29:152:0.388:2	./.	./.	0/1:115,72:30:187:0.385:2	./.	./.	./.
chr1	20518226	rs3179690	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,36:33:60:0.600:2	0/1:21,27:33:48:0.563:2	0/1:6,10:32:16:0.625:2	0/1:30,22:33:52:0.423:2	0/1:40,38:32:78:0.487:2	./.	./.	./.	./.	./.	./.
chr1	20519430	rs148069798	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:32:157:0.026:2	./.	./.	./.
chr1	20519497	rs41264519	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,37:30:77:0.481:2	./.	./.	./.	./.	./.	./.	./.
chr1	20519808	rs1061588	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,18:33:49:0.367:2	./.	0/1:36,39:32:75:0.520:2
chr1	20520538	rs139448008	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,38:28:95:0.400:2	./.	./.	./.	./.
chr1	20520732	rs7542020	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,51:31:101:0.505:2	./.	0/1:45,56:30:101:0.554:2
chr1	20640906	rs61741263	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:46,13:31:59:0.220:2	0/1:19,18:32:37:0.486:2	./.	./.	./.	./.	./.	./.	./.	0/1:37,45:31:82:0.549:2	./.
chr1	20656824	rs2072752	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:32,23:32:55:0.418:2	0/1:20,22:32:42:0.524:2	./.	./.	./.	./.	./.	./.	./.	0/1:37,33:32:70:0.471:2	0/1:50,37:32:87:0.425:2
chr1	20662938	rs10916769	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:53,44:33:97:0.454:2	0/1:25,20:32:45:0.444:2	./.	./.	./.	./.	./.	./.	./.	0/1:39,37:32:76:0.487:2	0/1:51,33:32:85:0.393:2
chr1	20671961	rs11582960	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,109:31:110:0.991:2	0/1:1,77:32:78:0.987:2	./.	./.	0/1:104,77:31:181:0.425:2	0/1:80,61:31:141:0.433:2	0/1:115,82:32:197:0.416:2	0/1:102,91:32:193:0.472:2	0/1:91,88:32:179:0.492:2	0/1:68,69:32:138:0.504:2	0/1:0,155:32:155:1.00:2
chr1	20671993	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:172,12:16:185:0.065:2	./.	./.	./.	./.	./.	./.	./.
chr1	20678551	rs230182	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,45:33:100:0.450:2	./.	0/1:38,34:32:72:0.472:2
chr1	20680305	rs190647773	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,38:30:81:0.469:2	./.	./.	./.	./.	./.	./.
chr1	20680718	rs2072751	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,83:32:84:0.988:2	0/1:0,50:32:50:1.00:2	./.	./.	0/1:76,96:32:172:0.558:2	0/1:80,56:31:136:0.412:2	0/1:83,86:32:169:0.509:2	0/1:89,71:32:160:0.444:2	./.	0/1:52,50:31:102:0.490:2	0/1:64,74:32:138:0.536:2
chr1	20827216	rs595980	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,20:31:62:0.323:2	0/1:31,26:31:57:0.456:2	0/1:35,34:31:69:0.493:2	0/1:35,32:31:67:0.478:2	./.	0/1:26,32:29:58:0.552:2	./.
chr1	20827258	rs148112540	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,51:31:127:0.402:2	./.	./.	./.
chr1	20880905	rs74058407	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,4:31:9:0.444:2	./.	./.	./.
chr1	20881309	rs3795509	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,74:31:142:0.521:2	./.	./.	./.
chr1	20915701	rs2072671	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:46,39:32:85:0.459:2	0/1:30,22:33:52:0.423:2	./.	./.	0/1:56,56:32:112:0.500:2	./.	0/1:91,51:33:142:0.359:2	0/1:5,123:33:128:0.961:2	./.	0/1:0,104:32:104:1.00:2	0/1:37,40:34:77:0.519:2
chr1	20945055	rs1048977	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,37:32:55:0.673:2	0/1:12,12:32:24:0.500:2	./.	0/1:26,30:31:56:0.536:2	0/1:0,72:31:72:1.00:2	./.	./.	./.	0/1:0,61:32:61:1.00:2	0/1:31,22:32:53:0.415:2	0/1:0,57:32:57:1.00:2
chr1	20960385	rs148871409	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,4:31:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	0/1:9,7:29:16:0.438:2	0/1:8,3:33:11:0.273:2
chr1	20977000	rs1043424	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,9:32:11:0.818:2	0/1:33,41:32:74:0.554:2	0/1:26,21:31:47:0.447:2	./.	./.	0/1:76,4:33:80:0.050:2	0/1:0,79:33:79:1.00:2	./.	0/1:40,34:33:74:0.459:2
chr1	20982631	rs4704	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,48:31:103:0.466:2	0/1:36,27:32:63:0.429:2	0/1:7,12:31:19:0.632:2	0/1:0,134:30:134:1.00:2	0/1:116,74:31:190:0.389:2	./.	0/1:1,189:31:190:0.995:2	0/1:2,170:31:172:0.988:2	0/1:0,113:31:113:1.00:2	0/1:73,55:31:128:0.430:2	0/1:72,53:31:125:0.424:2
chr1	20987873	rs537816	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,13:32:13:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,2:34:2:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,9:33:9:1.00:2
chr1	20992819	rs631357	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,45:32:103:0.437:2	0/1:26,24:32:50:0.480:2	0/1:0,29:32:29:1.00:2	0/1:0,154:32:154:1.00:2	0/1:83,56:30:139:0.403:2	0/1:1,158:32:159:0.994:2	0/1:0,156:32:156:1.00:2	0/1:0,143:31:143:1.00:2	0/1:1,162:32:163:0.994:2	0/1:62,42:31:105:0.404:2	0/1:59,63:31:122:0.516:2
chr1	21011346	rs12028811	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,15:29:38:0.395:2
chr1	21012563	rs72650870	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,22:33:38:0.579:2	0/1:17,12:31:29:0.414:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	21024901	rs522496	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,15:31:45:0.333:2	0/1:9,17:32:26:0.654:2	0/1:1,4:32:5:0.800:2	0/1:0,51:32:51:1.00:2	0/1:0,85:31:85:1.00:2	0/1:0,81:31:81:1.00:2	0/1:64,48:32:112:0.429:2	0/1:1,64:31:65:0.985:2	0/1:31,33:32:64:0.516:2	0/1:0,38:32:38:1.00:2	0/1:13,15:33:28:0.536:2
chr1	21031042	rs2296225	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,105:30:196:0.536:2	./.	./.	./.	./.
chr1	21031046	rs2296226	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,100:31:182:0.549:2	./.	./.	./.	./.	./.	./.	0/1:85,93:31:178:0.522:2
chr1	21036265	rs33996125	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:104,77:29:181:0.425:2	./.	./.	./.	./.	./.	./.
chr1	21042094	rs12046928	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,32:32:63:0.508:2	./.	./.	0/1:39,53:32:92:0.576:2	./.	./.	./.	0/1:10,27:33:37:0.730:2
chr1	21044052	rs149468609	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:29:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	21044161	rs601329	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:31:7:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,6:30:6:1.00:2	./.	0/1:0,2:30:2:1.00:2	./.	0/1:0,2:31:2:1.00:2	./.
chr1	21050177	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:33:148:0.027:2	./.	./.
chr1	21050958	rs592060	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,24:30:52:0.462:2	0/1:10,16:32:26:0.615:2	./.	0/1:0,77:30:78:1.00:2	0/1:42,33:30:75:0.440:2	0/1:0,79:30:79:1.00:2	0/1:0,64:30:64:1.00:2	0/1:0,61:31:61:1.00:2	0/1:33,17:33:51:0.340:2	0/1:0,44:30:44:1.00:2	0/1:0,41:30:44:1.00:2
chr1	21052462	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:32:182:0.022:2	./.	./.	./.	./.	./.
chr1	21143941	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:34:112:0.036:2	./.	./.	./.
chr1	21167404	rs2230573	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:33:75:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,88:32:89:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,118:32:118:1.00:2	0/1:0,147:33:147:1.00:2	0/1:0,92:33:92:1.00:2	0/1:0,121:32:122:1.00:2
chr1	21177758	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:32:70:0.057:2	./.	./.	./.	./.
chr1	21212726	rs201127143	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,14:16:150:0.093:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	21268346	rs35731992	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,31:30:87:0.356:2	./.	./.
chr1	21563258	rs140735120	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,6:28:146:0.041:2
chr1	21563335	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:33:170:0.024:2	./.	./.	./.	./.	./.
chr1	21571529	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:31:159:0.025:2	./.	./.
chr1	21573722	rs2229450	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,35:31:88:0.398:2	0/1:41,19:31:60:0.317:2	./.	./.	./.	0/1:1,93:32:94:0.989:2	./.	0/1:61,67:32:128:0.523:2	./.	0/1:46,41:31:87:0.471:2	0/1:84,48:31:132:0.364:2
chr1	21573855	rs1076669	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,56:31:123:0.455:2	0/1:52,55:31:107:0.514:2	./.	./.	./.	./.	./.	0/1:45,56:31:101:0.554:2
chr1	21771701	rs79181421	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,5:31:98:0.051:2	./.	./.	./.
chr1	21795288	rs61740199	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,51:31:109:0.468:2	./.	./.	./.	./.
chr1	21795388	rs1827293	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,10:33:15:0.667:2	0/1:55,51:33:106:0.481:2	0/1:44,67:33:111:0.604:2	./.	0/1:77,53:34:130:0.408:2	0/1:55,58:33:113:0.513:2	0/1:52,83:34:135:0.615:2	0/1:0,135:33:135:1.00:2	0/1:88,64:33:152:0.421:2
chr1	21797204	rs72872292	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,43:31:89:0.483:2	./.	./.	./.	./.
chr1	21798095	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,15:33:124:0.121:2
chr1	21798124	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:29:70:0.057:2	./.	./.	./.	./.
chr1	21798144	rs142355608	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,34:31:81:0.420:2	./.	./.	./.	./.
chr1	21798186	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:92,4:30:96:0.042:2	./.	./.	./.	./.	./.	./.
chr1	21798191	rs72872294	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,4:32:102:0.039:2	./.	./.	./.	./.	./.	./.
chr1	21798197	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,4:33:104:0.038:2	./.	./.	./.	./.	./.	./.
chr1	21798249	rs72872297	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,34:32:70:0.486:2	./.	./.	./.	./.
chr1	21799414	rs78430674	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,23:31:56:0.411:2	./.	./.	./.	./.
chr1	21801413	rs200692184	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:33:113:0.035:2	./.	./.	./.
chr1	21801438	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:31:124:0.032:2	./.	./.	./.
chr1	21801452	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:31:117:0.034:2	./.	./.	./.
chr1	21806571	rs41265989	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,54:32:59:0.915:2	./.	./.	./.	./.
chr1	21806606	rs201055589	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,6:32:123:0.049:2	./.	./.	./.
chr1	21806613	rs142126252	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,6:29:140:0.043:2	./.	./.	./.
chr1	21806619	rs375451944	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:163,4:33:167:0.024:2	./.	./.	./.	./.	./.	0/1:2,3:30:5:0.600:2	./.
chr1	21806621	rs3820293	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:165,5:32:170:0.029:2	./.	./.	./.	./.	./.	0/1:2,3:27:5:0.600:2	./.
chr1	21806624	rs3820292	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:170,5:30:175:0.029:2	./.	./.	./.	./.	./.	0/1:2,3:27:5:0.600:2	./.
chr1	21806667	rs12043777	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,6:32:197:0.030:2	./.	0/1:2,4:34:6:0.667:2	./.
chr1	21806710	rs12034222	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,5:31:139:0.036:2	0/1:145,6:30:151:0.040:2	./.	./.	./.	./.	0/1:1,6:32:7:0.857:2	0/1:142,4:32:146:0.027:2
chr1	21808159	rs71512991	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:132,60:33:192:0.313:2	0/1:113,36:32:149:0.242:2	0/1:14,15:32:29:0.517:2	0/1:92,96:32:188:0.511:2	0/1:55,130:31:185:0.703:2	0/1:118,74:32:192:0.385:2	0/1:156,41:31:197:0.208:2	0/1:159,33:33:192:0.172:2	0/1:79,98:32:177:0.554:2	0/1:95,88:32:183:0.481:2	0/1:73,103:31:176:0.585:2
chr1	21808207	rs146564096	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:153,31:34:184:0.168:2	0/1:156,40:32:196:0.204:2	0/1:17,14:32:31:0.452:2	0/1:58,61:33:119:0.513:2	0/1:55,79:32:134:0.590:2	0/1:85,66:33:151:0.437:2	0/1:84,24:33:108:0.222:2	0/1:176,16:33:192:0.083:2	0/1:70,66:33:136:0.485:2	0/1:78,60:33:138:0.435:2	0/1:57,72:32:129:0.558:2
chr1	21808223	rs145079058	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:155,24:33:179:0.134:2	0/1:141,29:32:170:0.171:2	0/1:15,12:32:27:0.444:2	0/1:50,53:32:103:0.515:2	0/1:46,58:32:104:0.558:2	0/1:76,62:32:138:0.449:2	0/1:50,46:33:96:0.479:2	0/1:181,15:32:196:0.077:2	0/1:64,61:34:125:0.488:2	0/1:74,53:32:127:0.417:2	0/1:51,71:32:122:0.582:2
chr1	21808227	rs202219980	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,7:31:26:0.269:2	0/1:84,20:32:104:0.192:2	0/1:60,38:31:98:0.388:2	./.	./.	./.	0/1:100,22:32:122:0.180:2	./.	0/1:106,12:31:118:0.102:2
chr1	21808237	rs199711979	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,6:31:22:0.273:2	0/1:82,16:32:98:0.163:2	0/1:61,28:32:89:0.315:2	./.	./.	./.	0/1:94,22:32:116:0.190:2	./.	0/1:102,12:32:114:0.105:2
chr1	21808243	rs150691144	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:173,16:31:189:0.085:2	0/1:128,24:31:152:0.158:2	0/1:12,6:31:18:0.333:2	./.	./.	./.	0/1:66,13:31:79:0.165:2	0/1:167,29:31:196:0.148:2	./.	./.	./.
chr1	21809014	rs200063908	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,6:34:62:0.097:2	./.	0/1:3,5:32:8:0.625:2	0/1:48,9:33:57:0.158:2	0/1:40,28:32:68:0.412:2	0/1:53,37:32:90:0.411:2	0/1:52,28:31:80:0.350:2	0/1:108,11:31:119:0.092:2	0/1:51,27:33:78:0.346:2	0/1:38,39:32:77:0.506:2	0/1:52,23:33:75:0.307:2
chr1	21809050	rs200706981	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:30,11:32:41:0.268:2	0/1:20,7:32:27:0.259:2	./.	0/1:25,20:31:45:0.444:2	./.	0/1:24,22:30:46:0.478:2	0/1:25,17:33:42:0.405:2	0/1:46,23:32:69:0.333:2	0/1:31,12:33:43:0.279:2	0/1:23,23:31:46:0.500:2	0/1:36,22:31:58:0.379:2
chr1	21809051	rs201590042	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,29:32:40:0.725:2	0/1:7,20:31:27:0.741:2	0/1:0,4:31:4:1.00:2	0/1:36,7:32:43:0.163:2	0/1:19,14:30:33:0.424:2	0/1:22,22:31:44:0.500:2	0/1:17,21:31:38:0.553:2	0/1:34,33:31:67:0.493:2	0/1:26,12:31:38:0.316:2	0/1:24,22:31:46:0.478:2	0/1:37,18:31:55:0.327:2
chr1	21809667	rs139757131	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,61:32:108:0.570:2	./.	./.	./.	./.
chr1	21809750	rs202069483	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:184,13:32:197:0.066:2	0/1:172,20:32:192:0.104:2	0/1:0,4:32:4:1.00:2	0/1:3,49:32:52:0.942:2	0/1:5,27:30:33:0.844:2	0/1:1,37:32:38:0.974:2	0/1:9,37:32:48:0.804:2	./.	0/1:1,45:33:46:0.978:2	0/1:7,40:32:47:0.851:2	0/1:6,62:33:68:0.912:2
chr1	21809778	rs61739078	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:161,31:31:192:0.161:2	0/1:175,20:31:195:0.103:2	0/1:41,6:30:47:0.128:2	0/1:165,25:30:190:0.132:2	./.	0/1:112,82:30:194:0.423:2	0/1:169,27:30:196:0.138:2	0/1:154,40:31:194:0.206:2	0/1:166,26:30:192:0.135:2	0/1:111,82:30:193:0.425:2	0/1:167,17:30:184:0.092:2
chr1	21809850	rs199951062	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:130,60:33:190:0.316:2	0/1:146,50:32:196:0.255:2	0/1:71,22:32:93:0.237:2	0/1:151,37:33:188:0.197:2	./.	0/1:94,92:33:186:0.495:2	0/1:112,77:34:189:0.407:2	0/1:118,74:33:192:0.385:2	0/1:133,50:34:183:0.273:2	0/1:90,101:34:191:0.529:2	0/1:147,30:33:177:0.169:2
chr1	21809876	rs151217608	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:132,51:33:183:0.279:2	0/1:118,50:32:168:0.298:2	0/1:49,17:32:66:0.258:2	./.	./.	./.	0/1:145,39:33:184:0.212:2	0/1:156,39:33:195:0.200:2	./.	./.	./.
chr1	21889635	rs1780316	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,158:29:158:1.00:2	0/1:0,89:29:89:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,176:29:176:1.00:2	0/1:115,59:31:174:0.339:2	0/1:107,83:28:190:0.437:2	0/1:0,158:29:158:1.00:2	0/1:1,171:29:172:0.994:2	0/1:111,75:29:186:0.403:2	0/1:0,148:29:149:1.00:2	0/1:86,66:28:152:0.434:2
chr1	21889760	rs149344982	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,48:30:91:0.527:2	./.	./.	./.	./.
chr1	21894735	rs3200254	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,27:31:62:0.435:2	0/1:24,22:32:46:0.478:2	./.	./.	./.	./.	./.	./.	0/1:53,47:33:100:0.470:2	./.	./.
chr1	21900171	rs3200255	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,9:31:44:0.205:2	0/1:28,11:28:39:0.282:2	./.	./.	./.	./.	./.	./.	0/1:27,26:29:53:0.491:2	./.	./.
chr1	21904131	rs34605986	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	0/1:4,3:33:7:0.429:2	./.
chr1	21932625	rs2275365	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,42:30:74:0.568:2	./.	./.	./.	./.
chr1	21935433	rs861212	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:47,46:31:93:0.495:2	0/1:31,27:31:58:0.466:2	0/1:8,6:30:14:0.429:2	./.	0/1:24,49:30:73:0.671:2	0/1:38,32:28:70:0.457:2	0/1:52,32:30:84:0.381:2	0/1:65,52:30:117:0.444:2	0/1:56,61:31:117:0.521:2	./.	0/1:58,64:31:122:0.525:2
chr1	21938268	rs200167247	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,10:33:18:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	21940555	rs2275363	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:20,16:31:36:0.444:2	0/1:13,15:32:28:0.536:2	0/1:1,3:31:4:0.750:2	./.	0/1:34,29:31:63:0.460:2	0/1:52,40:31:92:0.435:2	./.	0/1:61,24:31:85:0.282:2	0/1:39,35:32:74:0.473:2	0/1:24,19:31:43:0.442:2	0/1:38,33:32:71:0.465:2
chr1	21943818	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,67:32:161:0.416:2	./.	./.	./.
chr1	21943820	rs2275360	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,39:31:106:0.368:2	./.	./.	0/1:3,143:31:146:0.979:2	./.	./.	./.	./.
chr1	21944418	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,4:31:64:0.063:2	./.	./.	./.	./.	./.	./.
chr1	21952884	rs1130564	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,22:30:55:0.400:2	0/1:33,12:31:45:0.267:2	./.
chr1	21976283	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:113,4:31:119:0.034:2	./.	./.	./.	./.	./.	./.
chr1	21977941	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,49:31:119:0.412:2	./.	./.
chr1	21978125	rs376124706	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,21:32:51:0.412:2	./.	./.
chr1	22050649	rs2275668	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:31:6:1.00:2	0/1:23,21:31:44:0.477:2	0/1:1,7:28:8:0.875:2	0/1:0,19:31:19:1.00:2	0/1:12,10:31:22:0.455:2	0/1:3,21:31:24:0.875:2	0/1:1,14:32:15:0.933:2	0/1:0,25:31:25:1.00:2	0/1:0,39:31:39:1.00:2
chr1	22109370	rs10917042	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,9:28:16:0.563:2	./.	./.	0/1:26,18:28:44:0.409:2	./.	./.	0/1:5,6:30:11:0.545:2
chr1	22141030	rs75506362	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:27:11:0.727:2	./.	./.	./.	./.	0/1:2,5:30:7:0.714:2	./.	./.	./.	./.	./.
chr1	22141206	rs10917051	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	0/1:0,4:31:4:1.00:2	0/1:3,4:31:7:0.571:2	0/1:0,6:31:6:1.00:2	0/1:0,5:32:5:1.00:2	./.	0/1:0,2:34:2:1.00:2	0/1:0,2:32:2:1.00:2
chr1	22142474	rs202212506	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:25:43:0.095:2
chr1	22149935	rs897467	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,6:26:12:0.500:2	0/1:0,2:28:2:1.00:2	0/1:1,4:31:5:0.800:2	0/1:7,8:30:15:0.533:2	0/1:2,8:27:10:0.800:2	0/1:0,9:30:9:1.00:2	0/1:0,10:29:10:1.00:2	0/1:11,8:28:19:0.421:2	0/1:3,4:25:7:0.571:2	0/1:0,2:33:2:1.00:2	./.
chr1	22150118	rs1138469	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,26:31:70:0.371:2	./.
chr1	22150120	rs3736360	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:36,41:30:77:0.532:2	0/1:15,22:31:37:0.595:2	./.	./.	./.	./.	./.	0/1:47,57:30:104:0.548:2	./.	0/1:29,42:30:71:0.592:2	./.
chr1	22150160	rs3736358	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:33,36:32:69:0.522:2	0/1:17,20:32:37:0.541:2	./.	./.	./.	./.	./.	0/1:46,72:32:118:0.610:2	./.	0/1:39,34:32:73:0.466:2	./.
chr1	22154387	rs11552570	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,16:32:41:0.390:2	0/1:22,8:30:30:0.267:2	./.	./.	0/1:11,14:34:25:0.560:2	./.	./.
chr1	22154845	rs2228347	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:34,27:32:61:0.443:2	0/1:12,23:32:36:0.657:2	./.	./.	0/1:75,67:32:142:0.472:2	0/1:52,30:31:82:0.366:2	./.	0/1:55,69:32:124:0.556:2	0/1:55,39:34:94:0.415:2	0/1:0,75:32:75:1.00:2	./.
chr1	22157545	rs112494360	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,49:32:93:0.527:2	0/1:38,36:32:74:0.486:2	./.	./.	0/1:21,31:33:52:0.596:2	./.	./.
chr1	22158157	rs2229488	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:85,69:28:154:0.448:2	0/1:92,68:29:160:0.425:2	./.	./.	0/1:110,75:29:185:0.405:2	./.	./.
chr1	22159008	rs2229487	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:29,44:31:73:0.603:2	0/1:15,16:30:31:0.516:2	./.	./.	./.	./.	./.	0/1:52,42:30:94:0.447:2	./.	0/1:30,20:29:50:0.400:2	./.
chr1	22159774	rs2229486	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,55:31:127:0.433:2	0/1:49,61:31:110:0.555:2	./.	./.	0/1:48,36:32:84:0.429:2	./.	./.
chr1	22160020	rs17459097	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,86:31:176:0.489:2	./.	./.	./.	./.
chr1	22160043	rs2229493	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:99,80:29:179:0.447:2	0/1:88,94:30:182:0.516:2	./.	./.	0/1:83,66:31:149:0.443:2	./.	./.
chr1	22161275	rs2229492	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:56,60:31:116:0.517:2	0/1:48,28:31:76:0.368:2	./.	./.	./.	./.	./.	0/1:119,71:30:190:0.374:2	./.	0/1:92,68:30:160:0.425:2	./.
chr1	22163390	rs35444472	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,16:30:40:0.400:2	0/1:31,18:30:49:0.367:2	./.	./.	0/1:34,24:32:58:0.414:2	./.	./.
chr1	22163402	rs41310390	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,6:33:20:0.300:2	./.
chr1	22165901	rs2291826	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:26,45:29:71:0.634:2	0/1:16,9:28:25:0.360:2	./.	./.	0/1:37,52:27:89:0.584:2	0/1:44,50:28:94:0.532:2	./.	0/1:40,60:28:100:0.600:2	0/1:32,26:28:58:0.448:2	0/1:23,39:27:62:0.629:2	./.
chr1	22165945	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,4:32:101:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr1	22165963	rs139500146	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,37:29:105:0.352:2	./.	./.	./.	./.	./.	./.	./.
chr1	22165987	rs2291827	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:41,54:30:95:0.568:2	0/1:29,20:31:49:0.408:2	./.	./.	./.	./.	./.	0/1:73,83:29:156:0.532:2	./.	0/1:57,60:30:117:0.513:2	./.
chr1	22167605	rs2228349	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,108:30:185:0.584:2	0/1:78,76:30:154:0.494:2	./.	./.	0/1:69,60:30:129:0.465:2	./.	./.
chr1	22168801	rs2229491	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,32:28:86:0.372:2	0/1:40,29:29:69:0.420:2	./.	./.	0/1:48,34:31:82:0.415:2	./.	./.
chr1	22168845	rs2229489	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,20:30:66:0.308:2	0/1:43,36:30:79:0.456:2	./.	./.	0/1:43,27:31:70:0.386:2	./.	./.
chr1	22170716	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,4:32:133:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr1	22174380	rs113578258	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,41:29:88:0.466:2	./.
chr1	22174426	rs2290501	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:44,57:29:101:0.564:2	0/1:18,22:31:40:0.550:2	./.	./.	0/1:102,78:31:180:0.433:2	0/1:107,82:30:189:0.434:2	./.	0/1:85,96:31:181:0.530:2	0/1:63,55:31:118:0.466:2	0/1:0,95:31:95:1.00:2	./.
chr1	22174518	rs12737091	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,42:28:122:0.344:2	0/1:71,52:29:123:0.423:2	./.	./.	0/1:50,31:29:81:0.383:2	./.	./.
chr1	22176617	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:29:97:0.041:2	./.	./.	./.
chr1	22178631	rs190391786	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:31:11:0.636:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	22178674	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:32:174:0.023:2	./.	./.	./.
chr1	22179244	rs35669711	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,36:31:72:0.500:2	0/1:55,42:32:97:0.433:2	./.	./.	0/1:42,34:33:76:0.447:2	./.	./.
chr1	22179431	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:25:8:0.500:2	./.	./.	./.	./.
chr1	22179433	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:29:7:0.571:2	./.	./.	./.	./.
chr1	22179436	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.	./.
chr1	22179451	rs34443576	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,5:32:10:0.500:2	0/1:5,12:30:17:0.706:2	./.	./.	0/1:6,6:32:12:0.500:2	./.	./.
chr1	22179548	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,3:32:33:0.091:2	./.	./.	./.	./.	./.	./.
chr1	22180723	rs12742444	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,23:27:63:0.365:2	0/1:28,26:28:55:0.481:2	./.	./.	0/1:27,34:29:62:0.557:2	./.	./.
chr1	22181360	rs116788687	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,56:32:122:0.459:2	./.	./.	./.	./.	./.	./.	0/1:34,25:32:59:0.424:2
chr1	22181895	rs2229475	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,61:30:126:0.484:2	0/1:80,66:31:146:0.452:2	./.	./.	0/1:51,62:32:113:0.549:2	./.	./.
chr1	22186113	rs199860743	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,10:13:56:0.179:2	./.	./.	./.	0/1:24,4:28:28:0.143:2
chr1	22190613	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:153,4:33:157:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr1	22190679	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.	./.
chr1	22190694	rs371145826	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,48:32:108:0.444:2	0/1:39,26:32:65:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	22191454	rs897471	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,2:29:2:1.00:2	0/1:0,3:30:3:1.00:2	./.	0/1:0,8:30:8:1.00:2	0/1:0,6:30:6:1.00:2	0/1:5,10:30:15:0.667:2	0/1:0,5:30:5:1.00:2	0/1:2,4:31:6:0.667:2	0/1:3,4:26:7:0.571:2	./.	./.
chr1	22199245	rs2229482	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,47:30:85:0.553:2	0/1:28,24:31:52:0.462:2	0/1:0,18:29:18:1.00:2	0/1:67,86:29:153:0.562:2	./.	0/1:53,84:29:137:0.613:2	0/1:0,141:29:141:1.00:2	0/1:71,71:28:142:0.500:2	./.	0/1:54,61:29:115:0.530:2	0/1:32,45:29:77:0.584:2
chr1	22199882	.	C	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:22,5:22:27:0.185:2	./.	./.	0/1:27,5:27:33:0.156:2	./.	./.	./.	0/1:38,10:17:49:0.208:2	0/1:39,8:17:47:0.170:2	0/1:33,8:22:41:0.195:2	./.
chr1	22201438	rs41307806	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,39:30:80:0.488:2	./.	./.	./.	./.
chr1	22206649	rs989994	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,152:33:152:1.00:2	0/1:0,126:32:126:1.00:2	0/1:1,28:33:29:0.966:2	0/1:0,168:33:168:1.00:2	0/1:0,147:32:147:1.00:2	0/1:0,172:32:172:1.00:2	0/1:1,151:32:152:0.993:2	0/1:1,155:32:156:0.994:2	0/1:0,143:34:143:1.00:2	0/1:0,156:33:156:1.00:2	0/1:0,161:33:161:1.00:2
chr1	22206942	rs1874793	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:32:103:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,181:31:182:1.00:2	0/1:0,159:31:159:1.00:2	0/1:0,166:31:166:1.00:2	0/1:0,151:31:151:1.00:2	0/1:0,172:31:172:1.00:2	0/1:0,132:32:132:1.00:2	0/1:0,118:31:118:1.00:2	0/1:0,112:31:112:1.00:2
chr1	22207235	rs1874792	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:28:41:1.00:2	0/1:0,19:25:19:1.00:2	0/1:0,3:27:3:1.00:2	0/1:0,45:28:45:1.00:2	0/1:0,44:28:44:1.00:2	0/1:0,47:28:47:1.00:2	0/1:0,28:28:28:1.00:2	0/1:0,40:28:40:1.00:2	0/1:0,44:28:44:1.00:2	0/1:1,36:28:37:0.973:2	0/1:0,27:27:27:1.00:2
chr1	22207874	rs62642536	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,38:32:75:0.514:2	./.	./.
chr1	22214040	rs41310388	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,81:32:142:0.570:2	./.	./.	./.	./.	./.	./.	./.
chr1	22214046	rs41307868	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,58:29:118:0.492:2	./.	./.	./.	./.
chr1	22214127	rs2229478	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:62,69:31:131:0.527:2	0/1:54,26:29:80:0.325:2	./.	0/1:68,93:30:161:0.578:2	0/1:5,151:29:156:0.968:2	./.	./.	0/1:90,71:30:161:0.441:2	0/1:0,162:31:162:1.00:2	0/1:76,67:30:143:0.469:2	0/1:73,78:30:151:0.517:2
chr1	22214464	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,66:32:132:0.500:2	./.	./.	./.	./.	./.	./.
chr1	22216574	rs2254358	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,18:31:56:0.321:2	0/1:26,8:30:34:0.235:2	0/1:0,13:30:13:1.00:2	0/1:44,38:30:82:0.463:2	./.	0/1:1,70:30:71:0.986:2	0/1:7,109:30:116:0.940:2	0/1:59,43:30:102:0.422:2	./.	0/1:28,26:30:55:0.481:2	0/1:48,55:30:103:0.534:2
chr1	22216604	rs2254357	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,16:29:42:0.381:2	0/1:19,7:32:26:0.269:2	0/1:0,10:32:10:1.00:2	0/1:30,27:32:57:0.474:2	./.	0/1:0,51:30:51:1.00:2	0/1:4,57:31:61:0.934:2	0/1:49,28:30:77:0.364:2	./.	0/1:25,26:30:51:0.510:2	0/1:35,33:30:68:0.485:2
chr1	22217108	rs2501260	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:30:43:1.00:2	0/1:1,19:31:20:0.950:2	0/1:0,5:30:5:1.00:2	0/1:0,53:30:53:1.00:2	0/1:2,76:30:78:0.974:2	0/1:1,83:30:84:0.988:2	0/1:0,75:30:75:1.00:2	0/1:0,99:30:99:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,63:31:63:1.00:2
chr1	22303524	rs202069060	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,13:32:177:0.073:2	./.	./.
chr1	22304909	rs138865928	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,5:28:53:0.094:2	./.	./.	0/1:117,7:32:124:0.056:2	./.	./.	./.	./.	./.	./.
chr1	22307340	rs7528228	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,21:29:21:1.00:2	0/1:1,17:30:18:0.944:2	0/1:0,3:29:3:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,16:28:16:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,25:28:25:1.00:2	0/1:0,23:29:24:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,34:31:34:1.00:2
chr1	22307358	rs7528300	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:27:30:1.00:2	0/1:1,23:27:24:0.958:2	0/1:0,7:29:7:1.00:2	0/1:0,36:27:36:1.00:2	0/1:0,27:25:27:1.00:2	0/1:0,28:26:28:1.00:2	0/1:0,46:26:46:1.00:2	0/1:0,32:27:32:1.00:2	0/1:0,33:27:33:1.00:2	0/1:0,42:27:42:1.00:2	0/1:0,41:27:41:1.00:2
chr1	22307538	rs7528405	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:32:32:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,120:32:120:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,55:33:55:1.00:2	0/1:0,55:33:55:1.00:2	0/1:0,45:32:45:1.00:2
chr1	22310190	rs41266015	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,62:30:183:0.339:2	./.	./.
chr1	22310235	rs113497474	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:180,5:33:185:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr1	22310262	rs10733033	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,163:31:164:0.994:2	0/1:0,141:29:141:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,186:30:186:1.00:2	0/1:0,190:29:190:1.00:2	0/1:0,187:30:187:1.00:2	0/1:0,192:30:192:1.00:2	0/1:0,187:30:188:1.00:2	0/1:0,175:31:175:1.00:2	0/1:1,167:30:168:0.994:2	0/1:0,173:31:173:1.00:2
chr1	22310725	rs3820287	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,42:30:111:0.378:2	0/1:40,30:28:70:0.429:2	0/1:15,15:29:30:0.500:2	0/1:0,134:30:134:1.00:2	0/1:0,120:30:120:1.00:2	0/1:2,122:30:124:0.984:2	0/1:2,167:30:169:0.988:2	0/1:1,123:30:124:0.992:2	0/1:0,108:30:108:1.00:2	0/1:0,86:30:86:1.00:2	0/1:57,72:29:129:0.558:2
chr1	22310807	rs114365157	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:52,43:28:95:0.453:2	0/1:27,21:29:48:0.438:2	0/1:14,9:30:23:0.391:2	./.	./.	./.	./.	./.	./.	./.	0/1:85,54:28:140:0.388:2
chr1	22310824	rs1803531	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:28:88:1.00:2	0/1:0,42:28:42:1.00:2	0/1:0,17:28:17:1.00:2	0/1:0,118:28:118:1.00:2	0/1:0,123:28:123:1.00:2	0/1:0,160:29:160:1.00:2	0/1:3,169:28:172:0.983:2	0/1:0,157:29:158:1.00:2	0/1:0,97:30:97:1.00:2	0/1:0,87:28:87:1.00:2	0/1:0,103:28:103:1.00:2
chr1	22313140	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,62:29:160:0.388:2	./.	./.
chr1	22313161	rs1803530	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,135:28:135:1.00:2	0/1:1,82:28:83:0.988:2	0/1:0,25:28:25:1.00:2	0/1:2,146:29:148:0.986:2	0/1:1,169:28:170:0.994:2	0/1:0,163:29:163:1.00:2	0/1:1,175:29:176:0.994:2	0/1:2,166:28:168:0.988:2	0/1:0,142:30:142:1.00:2	0/1:1,132:28:133:0.992:2	0/1:0,152:28:153:1.00:2
chr1	22315738	rs4655006	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,29:30:111:0.261:2	0/1:108,58:30:166:0.349:2	0/1:39,18:28:57:0.316:2	0/1:68,77:31:145:0.531:2	0/1:16,103:28:119:0.866:2	0/1:63,65:28:128:0.508:2	0/1:74,68:27:142:0.479:2	0/1:44,80:25:124:0.645:2	0/1:130,20:28:150:0.133:2	0/1:3,81:29:84:0.964:2	0/1:79,32:29:111:0.288:2
chr1	22315750	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:127,21:10:149:0.142:2	./.	./.	./.	0/1:127,23:11:150:0.153:2	./.	./.	./.
chr1	22315762	rs202129706	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:117,14:14:131:0.107:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,13:15:115:0.113:2	0/1:102,16:12:118:0.136:2
chr1	22324705	rs7534936	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,188:29:190:0.989:2	0/1:5,147:28:152:0.967:2	0/1:30,21:29:51:0.412:2	./.	0/1:6,181:29:187:0.968:2	./.	./.	0/1:101,95:29:196:0.485:2	0/1:0,189:30:189:1.00:2	0/1:6,188:30:194:0.969:2	0/1:4,186:29:190:0.979:2
chr1	22328207	rs11541414	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,89:32:169:0.527:2	./.	./.
chr1	22328228	rs59115023	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,83:33:175:0.474:2	./.	./.
chr1	22329534	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,28:33:60:0.467:2	0/1:17,21:32:38:0.553:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	22332008	rs56968853	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:111,24:32:135:0.178:2	0/1:50,18:32:68:0.265:2	0/1:4,3:33:7:0.429:2	0/1:107,49:31:156:0.314:2	0/1:137,49:31:187:0.263:2	0/1:131,42:32:173:0.243:2	0/1:90,52:33:142:0.366:2	0/1:108,26:30:134:0.194:2	0/1:121,54:34:175:0.309:2	0/1:118,38:32:156:0.244:2	0/1:103,49:32:152:0.322:2
chr1	22333374	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,7:31:191:0.037:2	./.	./.
chr1	22333419	rs138658162	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:180,9:25:189:0.048:2	./.	./.	./.	./.	./.	./.	0/1:185,7:28:192:0.036:2	0/1:183,5:29:188:0.027:2	./.	0/1:180,8:26:188:0.043:2
chr1	22333468	rs143596163	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:188,6:29:194:0.031:2	./.	./.	0/1:186,6:29:192:0.031:2	0/1:186,11:30:197:0.056:2	0/1:191,5:29:196:0.026:2	0/1:188,8:30:196:0.041:2	0/1:181,14:29:195:0.072:2	0/1:189,5:29:194:0.026:2	0/1:188,5:30:193:0.026:2	0/1:177,10:28:187:0.053:2
chr1	22333954	rs74062237	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,41:32:94:0.436:2	./.	./.
chr1	22333988	rs112024506	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:54,5:27:59:0.085:2	./.	./.	0/1:97,7:30:104:0.067:2	0/1:106,7:32:114:0.062:2	0/1:79,4:32:83:0.048:2	0/1:121,16:30:138:0.117:2	0/1:96,12:32:108:0.111:2	0/1:105,9:27:114:0.079:2	0/1:79,11:32:90:0.122:2	0/1:58,5:22:64:0.079:2
chr1	22336257	rs111718190	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,5:26:150:0.033:2	./.	./.	./.
chr1	22336277	rs3820285	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:31:74:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,185:32:185:1.00:2	0/1:0,119:32:119:1.00:2	0/1:1,180:32:181:0.994:2	0/1:2,172:32:174:0.989:2	0/1:124,62:32:186:0.333:2	0/1:0,144:33:145:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,92:30:92:1.00:2
chr1	22336305	rs9187	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:15,84:30:99:0.848:2	0/1:11,72:31:83:0.867:2	0/1:22,4:30:26:0.154:2	./.	0/1:4,115:30:119:0.966:2	./.	./.	0/1:130,59:29:189:0.312:2	./.	0/1:10,86:30:96:0.896:2	0/1:15,105:30:121:0.875:2
chr1	22336308	rs12908	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:16,82:32:98:0.837:2	0/1:11,71:32:82:0.866:2	0/1:21,4:32:25:0.160:2	./.	0/1:8,114:32:122:0.934:2	./.	./.	0/1:131,58:32:189:0.307:2	./.	0/1:11,86:32:97:0.887:2	0/1:21,104:31:126:0.832:2
chr1	22336314	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,6:32:190:0.032:2	./.	./.
chr1	22336643	rs60189068	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:111,85:32:196:0.434:2	0/1:118,76:32:194:0.392:2	0/1:58,10:32:68:0.147:2	./.	0/1:112,68:32:180:0.378:2	./.	./.	0/1:147,42:32:189:0.222:2	0/1:61,117:33:178:0.657:2	0/1:116,79:31:196:0.405:2	0/1:95,93:32:188:0.495:2
chr1	22338926	rs200309031	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:95,64:32:159:0.403:2	0/1:59,57:30:116:0.491:2	0/1:49,5:30:54:0.093:2	0/1:100,40:30:140:0.286:2	0/1:9,155:28:164:0.945:2	0/1:114,34:31:148:0.230:2	0/1:86,49:29:135:0.363:2	0/1:87,62:30:149:0.416:2	0/1:145,25:30:170:0.147:2	0/1:9,140:31:149:0.940:2	0/1:86,54:31:140:0.386:2
chr1	22338938	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:119,22:12:141:0.156:2	./.	0/1:116,20:10:136:0.147:2	./.	0/1:120,20:10:140:0.143:2	./.	./.	./.
chr1	22408251	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:31:113:0.035:2	./.	./.	./.	./.
chr1	22408262	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:31:98:0.041:2	./.	./.	./.	./.
chr1	22453842	rs6678992	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:28,40:30:68:0.588:2	0/1:36,31:27:67:0.463:2	./.	./.	0/1:52,37:29:89:0.416:2	./.	0/1:78,43:29:121:0.355:2	./.	0/1:77,79:30:156:0.506:2	./.	./.
chr1	22453975	rs2235527	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:29,37:30:66:0.561:2	0/1:21,24:30:45:0.533:2	./.	./.	0/1:57,53:30:110:0.482:2	./.	0/1:57,63:30:120:0.525:2	./.	0/1:63,49:31:112:0.438:2	./.	./.
chr1	22835677	rs209729	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:54,57:32:111:0.514:2	0/1:25,24:32:49:0.490:2	./.	0/1:0,92:32:92:1.00:2	0/1:38,42:32:80:0.525:2	0/1:46,61:31:107:0.570:2	0/1:0,78:32:78:1.00:2	0/1:1,95:32:96:0.990:2	0/1:64,52:33:116:0.448:2	0/1:0,85:33:85:1.00:2	0/1:0,101:32:101:1.00:2
chr1	22838194	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:32:118:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	22843827	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,4:32:27:0.148:2	./.	./.	./.	./.	./.	./.
chr1	22843858	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:32:59:0.068:2	./.	./.
chr1	22846709	rs209720	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:31:37:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,13:32:13:1.00:2
chr1	22852715	rs881646	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:28,22:31:50:0.440:2	0/1:27,11:30:38:0.289:2	./.	0/1:36,25:31:61:0.410:2	./.	0/1:23,22:29:45:0.489:2	0/1:0,43:31:43:1.00:2	0/1:33,40:31:73:0.548:2	./.	0/1:0,38:31:38:1.00:2	0/1:41,38:29:79:0.481:2
chr1	22902772	rs56218493	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,72:31:167:0.431:2	./.	0/1:90,72:31:162:0.444:2	0/1:101,76:31:177:0.429:2	./.	0/1:75,67:32:142:0.472:2	./.
chr1	22903089	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.	./.	./.
chr1	22903229	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,79:30:147:0.537:2	./.	./.	./.	./.	./.	./.
chr1	22915674	rs56044578	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,50:31:78:0.641:2	./.	0/1:30,38:30:68:0.559:2	0/1:68,39:31:107:0.364:2	./.	0/1:33,47:31:80:0.588:2	./.
chr1	22915753	rs606002	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,13:32:32:0.406:2	0/1:2,36:32:38:0.947:2	./.	0/1:0,37:31:37:1.00:2	0/1:10,14:33:24:0.583:2	./.	0/1:12,6:32:18:0.333:2	0/1:0,21:32:21:1.00:2
chr1	22915858	rs76452513	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:33:4:0.750:2	0/1:6,4:31:10:0.400:2	./.	./.	./.
chr1	22919904	rs209696	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:46,31:30:77:0.403:2	0/1:38,21:30:59:0.356:2	./.	0/1:53,29:29:82:0.354:2	./.	./.	0/1:1,80:27:81:0.988:2	./.	./.	0/1:0,54:29:54:1.00:2	./.
chr1	22920100	rs55964751	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,55:31:92:0.598:2	./.	./.	./.	./.	./.	./.	./.
chr1	22923873	rs999765	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,24:31:57:0.421:2
chr1	22927408	rs56055011	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,7:32:10:0.700:2	./.	./.	./.	./.
chr1	22927503	rs62618734	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,49:30:98:0.500:2	./.	./.	./.	./.
chr1	22928172	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:31:84:0.049:2	./.	./.	./.	./.
chr1	22965438	rs172378	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,8:32:18:0.444:2	./.	./.	0/1:14,6:32:20:0.300:2	0/1:16,7:31:23:0.304:2	./.	0/1:0,6:31:6:1.00:2	0/1:7,3:32:10:0.300:2	./.	0/1:0,14:32:14:1.00:2	./.
chr1	22970642	rs15940	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:42,57:32:99:0.576:2	0/1:14,23:31:37:0.622:2	./.	0/1:35,50:32:85:0.588:2	./.	./.	./.	./.	./.	0/1:31,27:32:58:0.466:2	./.
chr1	23101688	rs1561624	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:67,63:33:131:0.485:2	0/1:37,42:33:79:0.532:2	0/1:1,30:34:31:0.968:2	0/1:0,161:33:161:1.00:2	0/1:1,122:33:123:0.992:2	0/1:78,70:32:148:0.473:2	0/1:5,125:33:130:0.962:2	0/1:0,146:33:146:1.00:2	./.	0/1:0,140:33:140:1.00:2	0/1:86,75:32:161:0.466:2
chr1	23111504	rs202178471	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:87,7:24:94:0.074:2	./.	./.	0/1:96,17:18:113:0.150:2	./.	0/1:117,23:12:140:0.164:2	./.	0/1:132,17:12:149:0.114:2	./.	./.	./.
chr1	23208925	rs2229872	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,56:33:107:0.523:2	./.	./.
chr1	23219493	rs309472	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,100:32:101:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,99:33:99:1.00:2	0/1:0,103:33:103:1.00:2	0/1:0,115:32:115:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,131:33:131:1.00:2	0/1:0,85:33:85:1.00:2	0/1:0,81:33:81:1.00:2	0/1:0,88:32:88:1.00:2
chr1	23234481	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:34:141:0.028:2
chr1	23235551	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:30:70:0.057:2	./.	./.	./.	./.
chr1	23236997	rs55993650	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,42:32:86:0.488:2	0/1:29,21:32:50:0.420:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	23280424	rs12048993	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:41,45:31:86:0.523:2	0/1:15,23:32:38:0.605:2	./.	./.	0/1:1,71:31:72:0.986:2	0/1:47,56:32:103:0.544:2	./.	./.	0/1:0,90:32:90:1.00:2	0/1:29,27:31:56:0.482:2	0/1:0,41:32:41:1.00:2
chr1	23346416	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,4:27:71:0.056:2	./.	./.	./.	./.	./.	./.	./.
chr1	23408727	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:34:194:0.021:2
chr1	23415518	rs12066671	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,99:32:180:0.550:2	./.	./.
chr1	23417806	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:168,4:32:172:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr1	23418153	rs10799790	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,102:31:102:1.00:2	0/1:0,48:32:48:1.00:2	./.	0/1:79,52:31:131:0.397:2	0/1:0,86:31:86:1.00:2	0/1:52,64:30:116:0.552:2	0/1:77,49:32:126:0.389:2	0/1:0,140:31:140:1.00:2	0/1:82,57:31:139:0.410:2	0/1:0,92:31:92:1.00:2	0/1:1,126:31:127:0.992:2
chr1	23419261	rs477717	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,89:30:92:0.978:2	0/1:0,44:30:44:1.00:2	./.	0/1:85,45:30:131:0.346:2	0/1:1,96:30:97:0.990:2	0/1:60,51:29:112:0.459:2	0/1:62,57:30:119:0.479:2	0/1:0,114:30:114:1.00:2	0/1:0,78:30:79:1.00:2	0/1:0,76:30:77:1.00:2	0/1:1,91:30:93:0.989:2
chr1	23419283	rs35917050	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,53:30:101:0.525:2	./.	./.	./.	./.
chr1	23419374	rs3765407	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,22:32:22:1.00:2	0/1:0,16:32:16:1.00:2	./.	0/1:21,17:30:38:0.447:2	0/1:1,19:32:20:0.950:2	0/1:16,12:31:28:0.429:2	0/1:10,10:32:20:0.500:2	0/1:0,40:32:40:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,38:31:38:1.00:2
chr1	23419383	rs477830	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,23:33:23:1.00:2	0/1:0,16:32:16:1.00:2	./.	0/1:17,19:32:36:0.528:2	0/1:0,18:30:18:1.00:2	0/1:14,9:32:23:0.391:2	0/1:5,7:32:12:0.583:2	0/1:0,42:32:42:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,33:32:33:1.00:2
chr1	23419855	rs1983965	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,189:31:195:0.974:2	0/1:0,177:30:177:1.00:2	./.	0/1:107,91:31:198:0.460:2	0/1:0,184:30:184:1.00:2	0/1:111,83:31:195:0.428:2	0/1:104,80:30:184:0.435:2	0/1:3,193:31:196:0.985:2	0/1:0,187:32:187:1.00:2	0/1:0,192:31:192:1.00:2	0/1:4,184:30:188:0.979:2
chr1	23519633	rs6300	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,5:29:6:0.833:2	0/1:15,18:30:33:0.545:2	./.	./.	./.	./.	./.	./.	./.
chr1	23520761	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:166,4:34:170:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr1	23520797	rs8192527	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,73:33:151:0.483:2	./.	./.	./.
chr1	23521156	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:31:89:0.045:2
chr1	23688933	rs2849028	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,36:32:95:0.379:2	0/1:30,37:32:67:0.552:2	0/1:10,10:32:20:0.500:2	0/1:47,54:32:101:0.535:2	0/1:1,115:31:116:0.991:2	0/1:2,140:31:142:0.986:2	0/1:1,130:32:131:0.992:2	0/1:3,126:31:129:0.977:2	0/1:53,48:33:101:0.475:2	0/1:1,104:32:106:0.990:2	0/1:0,112:32:112:1.00:2
chr1	23689083	rs3795308	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,40:31:108:0.370:2	./.	./.	./.	./.	./.	./.	./.
chr1	23696152	rs665977	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:30:29:1.00:2	0/1:0,21:32:21:1.00:2	0/1:1,4:31:5:0.800:2	0/1:0,49:31:49:1.00:2	0/1:2,64:30:67:0.970:2	0/1:1,48:30:49:0.980:2	0/1:0,57:31:57:1.00:2	0/1:0,56:30:56:1.00:2	0/1:31,31:32:62:0.500:2	0/1:0,31:31:31:1.00:2	0/1:0,58:29:58:1.00:2
chr1	23697617	rs638722	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:57,64:32:121:0.529:2	0/1:29,19:31:48:0.396:2	./.	0/1:52,66:32:118:0.559:2	./.	./.	./.	./.	./.	./.	./.
chr1	23698120	rs754984	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,27:33:57:0.474:2	./.	./.	./.	./.	./.	./.	./.
chr1	23751140	rs71514235	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,10:31:10:1.00:2	./.	0/1:0,2:31:2:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,26:31:26:1.00:2	0/1:9,8:29:17:0.471:2	./.	0/1:0,13:29:13:1.00:2	0/1:0,8:30:8:1.00:2
chr1	23759632	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:31:120:0.033:2	./.	./.	./.	./.	./.
chr1	23759743	rs140136454	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,7:31:10:0.700:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	23761028	rs74415268	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,35:30:74:0.473:2	0/1:40,43:32:84:0.518:2	./.	./.
chr1	23763065	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:31:119:0.034:2
chr1	23763956	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,5:30:99:0.051:2	./.	./.	./.	./.	./.	./.
chr1	23767669	rs12117542	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,70:32:161:0.435:2	0/1:56,83:33:139:0.597:2	./.	./.
chr1	23847464	rs2075995	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,114:31:114:1.00:2	0/1:0,71:31:71:1.00:2	./.	./.	0/1:5,175:31:180:0.972:2	0/1:1,179:31:180:0.994:2	0/1:180,4:32:184:0.022:2	./.	./.	0/1:62,59:31:121:0.488:2	0/1:0,133:32:133:1.00:2
chr1	23847534	rs41306580	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,62:30:115:0.539:2	./.	./.	./.
chr1	23885498	rs11574	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:27:3:1.00:2	0/1:0,57:30:57:1.00:2	./.	0/1:0,82:30:82:1.00:2	0/1:0,66:29:66:1.00:2	0/1:0,72:29:73:1.00:2	0/1:0,64:30:64:1.00:2	0/1:2,57:29:59:0.966:2	0/1:54,25:27:80:0.316:2
chr1	23885773	rs146163818	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,29:31:85:0.358:2	./.
chr1	23965704	rs10917403	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:42,39:32:81:0.481:2	0/1:27,30:33:57:0.526:2	0/1:6,9:32:15:0.600:2	./.	./.	./.	./.	0/1:63,58:33:121:0.479:2	0/1:59,52:34:111:0.468:2	./.	0/1:57,58:33:115:0.504:2
chr1	24018277	rs10917413	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,98:33:98:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,77:32:77:1.00:2
chr1	24022833	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,3:35:72:0.042:2	./.	./.
chr1	24070033	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	./.	./.	./.	./.	./.
chr1	24077451	rs2235541	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,24:30:25:0.960:2	./.	0/1:14,14:30:28:0.500:2	./.	0/1:12,6:31:18:0.333:2	0/1:19,15:32:34:0.441:2
chr1	24077943	rs139059717	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,20:31:40:0.500:2	./.	./.
chr1	24077957	rs35797868	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,33:30:36:0.917:2	./.	0/1:23,24:30:47:0.511:2	./.	./.	./.
chr1	24078962	rs114897920	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,38:31:86:0.442:2
chr1	24082402	rs78642828	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,49:31:76:0.645:2	./.
chr1	24083494	rs2076345	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,4:30:15:0.267:2	0/1:84,60:30:145:0.417:2	0/1:60,48:29:108:0.444:2	./.	0/1:88,64:30:152:0.421:2	./.	./.	./.	0/1:69,59:30:128:0.461:2
chr1	24119207	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:31:123:0.033:2	./.	./.
chr1	24119249	rs375628913	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,5:32:80:0.063:2	./.	./.
chr1	24120839	rs115000504	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,29:33:48:0.604:2	./.
chr1	24122717	rs143694860	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,77:30:180:0.428:2	./.	./.
chr1	24122986	rs760941	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	0/1:0,8:27:8:1.00:2	0/1:5,3:29:8:0.375:2	0/1:1,3:25:5:0.750:2	./.	./.	./.
chr1	24134721	rs719400	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,116:32:116:1.00:2	0/1:0,64:32:64:1.00:2	0/1:5,3:33:8:0.375:2	0/1:97,84:33:181:0.464:2	0/1:87,77:32:164:0.470:2	0/1:0,162:32:162:1.00:2	0/1:0,183:32:183:1.00:2	0/1:2,192:32:194:0.990:2	0/1:0,166:33:166:1.00:2	0/1:1,131:32:132:0.992:2	0/1:0,141:31:141:1.00:2
chr1	24175169	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,13:16:119:0.111:2
chr1	24180962	rs13551	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,13:30:27:0.481:2	./.	0/1:52,69:29:121:0.570:2	./.	0/1:72,76:30:148:0.514:2	./.	./.	./.	0/1:73,75:30:148:0.507:2
chr1	24194482	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:30:68:0.059:2	./.	./.	./.
chr1	24201067	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,37:30:67:0.552:2	./.
chr1	24201094	rs2229581	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,102:31:103:0.990:2	0/1:0,57:31:57:1.00:2	./.	0/1:76,82:31:158:0.519:2	./.	0/1:2,122:30:124:0.984:2	0/1:86,56:30:142:0.394:2	0/1:1,130:30:131:0.992:2	0/1:92,71:31:163:0.436:2	0/1:2,94:31:97:0.979:2	0/1:101,87:30:189:0.463:2
chr1	24201109	rs2229580	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,103:32:104:0.990:2	0/1:0,64:31:64:1.00:2	./.	0/1:88,91:32:179:0.508:2	./.	0/1:2,139:31:141:0.986:2	0/1:95,72:31:167:0.431:2	0/1:1,157:31:158:0.994:2	0/1:105,78:32:183:0.426:2	0/1:2,108:32:110:0.982:2	0/1:105,90:32:195:0.462:2
chr1	24201162	rs2229579	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,4:29:12:0.333:2	0/1:100,78:29:178:0.438:2	0/1:93,82:29:175:0.469:2	./.	./.	./.	./.	./.	./.
chr1	24201262	rs2502993	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,77:32:78:0.987:2	0/1:1,62:32:63:0.984:2	./.	0/1:83,58:33:141:0.411:2	./.	0/1:1,123:32:124:0.992:2	0/1:78,73:32:151:0.483:2	0/1:0,104:32:104:1.00:2	0/1:61,72:33:133:0.541:2	0/1:0,94:33:94:1.00:2	0/1:53,37:33:90:0.411:2
chr1	24201357	rs4649124	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,85:32:85:1.00:2	0/1:2,54:32:56:0.964:2	./.	0/1:55,44:32:99:0.444:2	./.	0/1:1,94:32:95:0.989:2	0/1:77,66:32:143:0.462:2	0/1:0,132:33:132:1.00:2	0/1:43,55:33:99:0.561:2	0/1:0,70:32:70:1.00:2	0/1:34,31:31:65:0.477:2
chr1	24201448	rs3003336	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,60:31:60:1.00:2	0/1:0,29:31:29:1.00:2	./.	0/1:31,26:29:57:0.456:2	./.	0/1:2,50:30:52:0.962:2	0/1:30,36:29:66:0.545:2	0/1:0,86:30:86:1.00:2	0/1:32,39:31:71:0.549:2	0/1:2,50:31:52:0.962:2	0/1:28,23:31:51:0.451:2
chr1	24201643	rs2501431	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,93:30:95:0.989:2	0/1:1,50:30:51:0.980:2	./.	0/1:72,52:29:124:0.419:2	./.	0/1:0,109:29:109:1.00:2	0/1:100,79:29:179:0.441:2	0/1:1,116:29:117:0.991:2	0/1:62,60:31:122:0.492:2	0/1:0,82:30:82:1.00:2	0/1:72,52:29:124:0.419:2
chr1	24201919	rs2502992	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:2,42:32:44:0.955:2	0/1:0,25:32:25:1.00:2	./.	0/1:43,21:32:64:0.328:2	./.	0/1:0,38:32:38:1.00:2	0/1:70,27:32:97:0.278:2	0/1:0,52:32:52:1.00:2	0/1:60,24:33:84:0.286:2	0/1:0,46:32:46:1.00:2	0/1:38,24:31:62:0.387:2
chr1	24201920	rs2501432	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:2,41:30:43:0.953:2	0/1:0,26:29:26:1.00:2	./.	0/1:43,21:28:64:0.328:2	./.	0/1:0,38:30:38:1.00:2	0/1:69,27:30:96:0.281:2	0/1:0,52:30:52:1.00:2	0/1:61,24:30:85:0.282:2	0/1:0,46:29:46:1.00:2	0/1:38,24:28:62:0.387:2
chr1	24288193	.	G	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,6:32:28:0.214:2	0/1:26,7:32:33:0.212:2	./.	0/1:30,9:31:39:0.231:2	0/1:24,5:32:29:0.172:2	0/1:27,17:32:44:0.386:2	0/1:36,10:31:46:0.217:2	0/1:27,12:32:39:0.308:2	0/1:21,12:32:33:0.364:2	0/1:15,10:33:25:0.400:2	0/1:34,14:32:48:0.292:2
chr1	24288284	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:49,9:33:58:0.155:2	0/1:32,3:31:35:0.086:2	./.	./.	./.	./.	./.	./.	./.	0/1:47,13:32:60:0.217:2	./.
chr1	24288386	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,4:30:10:0.400:2	./.	./.	./.	./.	./.	0/1:60,4:32:64:0.063:2
chr1	24288402	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,3:32:6:0.500:2	./.	./.	./.	./.	./.	0/1:50,6:31:56:0.107:2
chr1	24288432	rs115735413	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,12:33:13:0.923:2	0/1:1,6:32:7:0.857:2	./.	0/1:2,17:31:19:0.895:2	./.	0/1:41,7:32:48:0.146:2	./.	./.	./.	./.	./.
chr1	24288476	rs72540327	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,40:32:84:0.476:2	0/1:25,27:32:52:0.519:2	0/1:1,95:32:97:0.990:2	0/1:1,92:33:93:0.989:2	0/1:16,51:33:67:0.761:2	0/1:20,46:32:67:0.697:2
chr1	24289057	rs148391376	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,40:29:87:0.460:2	0/1:60,29:30:89:0.326:2	0/1:0,106:30:107:1.00:2	0/1:74,48:31:122:0.393:2	0/1:41,47:30:88:0.534:2	0/1:99,59:29:158:0.373:2
chr1	24298399	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.	./.	./.	./.	./.
chr1	24298422	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:31:58:0.069:2	./.	./.	./.	./.	./.
chr1	24298467	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:31:43:0.093:2	./.	./.	./.	./.	./.
chr1	24387822	rs7553075	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:36,59:33:95:0.621:2	0/1:30,29:33:59:0.492:2	./.	0/1:55,54:32:109:0.495:2	./.	0/1:65,64:32:129:0.496:2	0/1:35,41:32:76:0.539:2	./.	./.	./.	0/1:61,68:33:129:0.527:2
chr1	24392600	rs6682222	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,71:30:160:0.444:2	./.	0/1:100,57:30:157:0.363:2	0/1:92,55:31:148:0.374:2	./.	./.	./.	./.
chr1	24392671	rs6699525	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,64:32:164:0.390:2	./.	0/1:110,61:32:171:0.357:2	0/1:114,46:32:160:0.288:2	./.	./.	./.	./.
chr1	24393563	rs16829071	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,91:32:194:0.469:2	./.	0/1:96,95:32:191:0.497:2	0/1:110,85:33:195:0.436:2	./.	./.	./.	./.
chr1	24394811	rs12145360	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,46:32:110:0.418:2	./.	0/1:68,46:32:114:0.404:2	0/1:67,41:32:108:0.380:2	./.	./.	./.	./.
chr1	24406535	rs35446243	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,23:31:46:0.511:2	0/1:18,22:30:40:0.550:2	./.	./.
chr1	24406647	rs4649175	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,22:30:64:0.344:2	0/1:24,14:31:38:0.368:2	0/1:0,14:28:14:1.00:2	0/1:28,28:30:56:0.500:2	0/1:1,69:30:70:0.986:2	./.	0/1:47,26:29:73:0.356:2	./.	./.	0/1:2,58:31:60:0.967:2	0/1:28,30:31:58:0.517:2
chr1	24409165	rs4320728	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,36:30:67:0.537:2	./.	0/1:27,20:30:48:0.426:2	0/1:43,26:30:69:0.377:2	./.	./.	./.	./.
chr1	24409191	rs4320729	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,24:33:50:0.480:2	0/1:9,8:33:17:0.471:2	0/1:0,9:32:9:1.00:2	0/1:40,28:32:68:0.412:2	0/1:1,61:32:62:0.984:2	./.	0/1:27,36:33:63:0.571:2	./.	./.	0/1:0,30:33:30:1.00:2	0/1:19,17:33:36:0.472:2
chr1	24413159	rs6424152	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,12:31:32:0.375:2	0/1:14,8:32:23:0.364:2	0/1:0,3:32:3:1.00:2	0/1:19,35:32:54:0.648:2	0/1:0,40:31:40:1.00:2	./.	0/1:37,13:31:50:0.260:2	./.	./.	0/1:0,20:32:20:1.00:2	0/1:25,20:31:45:0.444:2
chr1	24413236	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.	./.
chr1	24416059	rs4393101	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,37:33:37:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,36:33:36:1.00:2	0/1:0,47:33:47:1.00:2	0/1:22,29:33:51:0.569:2	0/1:0,27:33:27:1.00:2	0/1:0,51:32:51:1.00:2
chr1	24416070	rs7533060	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,19:29:48:0.396:2	0/1:11,11:29:22:0.500:2	0/1:0,6:31:6:1.00:2	0/1:24,16:31:40:0.400:2	0/1:0,45:30:45:1.00:2	./.	0/1:23,20:30:43:0.465:2	./.	./.	0/1:0,28:31:28:1.00:2	0/1:41,20:30:61:0.328:2
chr1	24416133	rs4276859	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,24:30:57:0.421:2	./.	0/1:39,36:30:75:0.480:2	0/1:47,36:32:83:0.434:2	./.	./.	./.	./.
chr1	24416628	rs72648548	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,20:28:57:0.351:2	0/1:20,18:28:38:0.474:2	./.	./.	./.	0/1:27,25:29:52:0.481:2	./.	0/1:43,39:28:82:0.476:2	./.	./.	./.
chr1	24417415	rs6700245	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,32:28:63:0.508:2	0/1:24,25:29:49:0.510:2	./.	./.	./.	0/1:54,47:27:101:0.465:2	0/1:60,85:28:145:0.586:2	./.	0/1:65,66:29:131:0.504:2	0/1:0,79:29:79:1.00:2	./.
chr1	24418768	rs7556176	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,20:27:42:0.476:2	0/1:18,14:28:32:0.438:2	0/1:0,5:30:5:1.00:2	0/1:1,68:28:69:0.986:2	0/1:1,58:28:59:0.983:2	./.	0/1:30,28:25:58:0.483:2	./.	./.	0/1:27,29:28:57:0.518:2	0/1:32,37:26:69:0.536:2
chr1	24419496	rs4233050	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,5:31:25:0.200:2	0/1:12,7:28:19:0.368:2	0/1:1,8:30:9:0.889:2	0/1:0,42:30:42:1.00:2	0/1:0,38:29:38:1.00:2	./.	0/1:22,40:31:62:0.645:2	./.	./.	0/1:20,14:29:34:0.412:2	0/1:15,22:30:37:0.595:2
chr1	24421474	rs6678540	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,31:31:64:0.484:2	0/1:31,18:30:49:0.367:2	0/1:0,15:30:15:1.00:2	0/1:2,94:31:96:0.979:2	0/1:1,71:30:72:0.986:2	./.	0/1:63,49:31:112:0.438:2	./.	./.	0/1:39,47:31:86:0.547:2	0/1:42,51:31:93:0.548:2
chr1	24421950	rs4319261	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,25:33:46:0.543:2	0/1:13,10:33:23:0.435:2	0/1:1,5:32:6:0.833:2	0/1:0,54:32:54:1.00:2	0/1:0,40:32:40:1.00:2	./.	0/1:22,21:32:43:0.488:2	./.	./.	0/1:42,26:33:68:0.382:2	0/1:35,32:33:67:0.478:2
chr1	24424466	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,63:32:180:0.350:2	./.	./.
chr1	24447468	rs3795299	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,42:31:105:0.400:2	./.	0/1:69,46:29:115:0.400:2	0/1:61,46:30:108:0.430:2	0/1:51,38:28:89:0.427:2	./.	./.	0/1:58,48:29:106:0.453:2
chr1	24447943	rs34967816	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,30:31:56:0.536:2	./.	0/1:26,38:31:64:0.594:2
chr1	24448084	rs17852648	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,25:33:44:0.568:2	0/1:5,17:33:22:0.773:2	0/1:0,4:32:4:1.00:2	0/1:30,27:32:57:0.474:2	0/1:26,42:32:69:0.618:2	0/1:27,42:32:69:0.609:2	0/1:24,26:32:50:0.520:2	0/1:27,37:32:64:0.578:2	./.	0/1:14,27:32:41:0.659:2	./.
chr1	24448097	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,28:30:56:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr1	24454688	rs16829204	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:55,56:32:111:0.505:2	0/1:40,38:32:78:0.487:2	./.	./.	./.	./.	0/1:117,82:31:199:0.412:2	./.	0/1:109,82:32:191:0.429:2	./.	0/1:59,72:32:131:0.550:2
chr1	24460797	rs17852649	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,118:33:120:0.983:2	0/1:2,63:33:65:0.969:2	0/1:12,7:33:19:0.368:2	./.	0/1:0,170:32:170:1.00:2	0/1:82,69:32:151:0.457:2	0/1:3,175:33:179:0.983:2	0/1:98,87:32:185:0.470:2	0/1:0,174:34:174:1.00:2	0/1:0,137:32:137:1.00:2	0/1:73,60:31:133:0.451:2
chr1	24465103	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:31:78:0.051:2	./.	./.	./.	./.	./.
chr1	24465113	rs10903022	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,8:33:17:0.471:2	0/1:1,105:32:106:0.991:2	./.	0/1:39,41:32:80:0.513:2	./.	0/1:84,39:33:123:0.317:2	./.	./.	0/1:49,50:33:99:0.505:2
chr1	24484108	rs72648587	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,58:29:104:0.558:2	./.	0/1:52,49:29:101:0.485:2	./.	0/1:51,34:29:85:0.400:2
chr1	24496049	rs201766459	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,63:31:111:0.568:2	./.	./.	./.	./.	./.
chr1	24496085	rs34654982	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,26:31:53:0.491:2	./.	./.
chr1	24658063	rs2486668	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:67,52:33:119:0.437:2	0/1:64,36:32:100:0.360:2	0/1:11,10:32:21:0.476:2	./.	./.	0/1:115,79:32:194:0.407:2	0/1:104,72:33:176:0.409:2	./.	./.	./.	./.
chr1	24663184	rs34637004	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,36:31:65:0.554:2	./.	./.	./.	0/1:28,20:32:48:0.417:2	./.
chr1	24663654	rs41268749	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	24668667	rs11576645	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:48,56:32:104:0.538:2	0/1:23,36:33:59:0.610:2	0/1:5,8:31:13:0.615:2	./.	0/1:85,81:31:167:0.488:2	./.	./.	./.	./.	./.	0/1:58,57:32:115:0.496:2
chr1	24669383	rs202191841	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,52:30:123:0.426:2	./.	./.
chr1	24669459	rs141193530	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	24671418	rs116396279	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,80:32:167:0.479:2	./.	./.	./.	0/1:69,70:32:139:0.504:2	./.
chr1	24680915	rs12030057	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,40:31:113:0.354:2	0/1:34,35:32:69:0.507:2	./.	0/1:26,33:31:59:0.559:2
chr1	24687389	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,8:14:38:0.211:2	./.	./.	./.
chr1	24687446	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,13:32:30:0.433:2	./.
chr1	24690764	rs545809	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,36:33:79:0.456:2	0/1:24,8:31:32:0.250:2	0/1:7,6:32:13:0.462:2	0/1:1,120:32:121:0.992:2	0/1:40,32:31:72:0.444:2	./.	0/1:57,44:32:101:0.436:2	./.	./.	./.	./.
chr1	24706113	rs3765428	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,4:31:30:0.133:2	0/1:0,63:31:63:1.00:2	0/1:57,29:32:86:0.337:2	0/1:40,23:30:63:0.365:2	0/1:77,54:31:131:0.412:2
chr1	24706269	rs1064842	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,7:31:35:0.200:2	0/1:2,60:29:62:0.968:2	0/1:25,32:31:57:0.561:2	0/1:30,20:29:50:0.400:2	0/1:47,46:30:93:0.495:2
chr1	24706292	rs1142057	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,11:31:34:0.324:2	0/1:2,58:30:60:0.967:2	0/1:25,31:30:56:0.554:2	0/1:32,20:30:52:0.385:2	0/1:42,42:30:84:0.500:2
chr1	24710405	rs11538189	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,30:29:84:0.357:2	0/1:59,49:29:108:0.454:2	0/1:66,47:30:113:0.416:2	0/1:43,38:29:81:0.469:2	./.
chr1	24718075	rs2294520	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,33:32:70:0.471:2	./.	./.	0/1:65,34:32:99:0.343:2
chr1	24718079	rs560219	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,63:32:65:0.969:2	0/1:2,33:31:35:0.943:2	./.	0/1:0,65:30:65:1.00:2	0/1:26,26:31:52:0.500:2	./.	0/1:37,22:30:59:0.373:2	./.	./.	./.	./.
chr1	24771680	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,5:33:142:0.035:2	./.
chr1	24771721	rs144375095	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,51:33:109:0.468:2	0/1:35,29:32:64:0.453:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	24785393	rs2272935	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:62,36:33:98:0.367:2	0/1:33,19:32:53:0.365:2	./.	./.	./.	./.	./.	0/1:66,47:32:113:0.416:2	./.	./.	0/1:74,58:33:132:0.439:2
chr1	24786966	rs201651123	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,57:31:125:0.456:2	0/1:30,27:29:58:0.474:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	24859617	rs196429	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:19,21:31:41:0.525:2	0/1:14,16:29:30:0.533:2	0/1:1,5:30:6:0.833:2	./.	./.	./.	0/1:25,24:30:50:0.490:2	0/1:0,66:29:67:1.00:2	./.	0/1:20,16:31:36:0.444:2	0/1:19,17:32:38:0.472:2
chr1	24859665	rs196430	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:30,26:31:56:0.464:2	0/1:9,14:32:23:0.609:2	0/1:0,10:33:10:1.00:2	./.	./.	./.	0/1:21,27:32:48:0.563:2	0/1:0,70:32:70:1.00:2	./.	0/1:21,19:32:40:0.475:2	0/1:29,23:31:52:0.442:2
chr1	24861704	rs196432	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:25,18:30:43:0.419:2	0/1:18,20:32:38:0.526:2	0/1:2,5:29:7:0.714:2	./.	./.	./.	0/1:32,26:31:58:0.448:2	0/1:0,52:32:52:1.00:2	./.	0/1:31,27:32:58:0.466:2	0/1:30,29:31:59:0.492:2
chr1	24989223	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,3:32:24:0.125:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	24995778	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,22:9:139:0.159:2	./.	./.	./.
chr1	25291010	rs6672420	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,24:29:53:0.453:2	0/1:0,41:30:42:1.00:2	0/1:0,63:31:63:1.00:2	0/1:35,33:29:68:0.485:2	0/1:25,21:30:46:0.457:2	0/1:22,21:31:43:0.488:2	0/1:21,33:31:54:0.611:2
chr1	25554663	rs34639798	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,19:31:43:0.442:2	0/1:22,7:30:29:0.241:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	25558970	rs142656383	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,16:32:38:0.421:2	0/1:20,13:32:33:0.394:2
chr1	25570081	rs1043879	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:96,81:33:177:0.458:2	0/1:60,56:32:116:0.483:2	./.	0/1:101,92:32:193:0.477:2	./.	0/1:84,94:32:178:0.528:2	./.	./.	./.	0/1:90,87:33:177:0.492:2	0/1:104,72:33:176:0.409:2
chr1	25572984	rs34484514	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,40:33:77:0.519:2	./.	./.
chr1	25573016	rs34619962	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,38:32:99:0.384:2	./.	./.	./.
chr1	25573023	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,35:30:71:0.493:2	./.	./.
chr1	25573233	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:29:70:0.057:2	./.	./.	./.	./.
chr1	25617176	rs201703675	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,4:31:8:0.500:2	./.	./.	./.	./.	./.	./.
chr1	25617179	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,4:33:8:0.500:2	./.	./.	./.	./.	./.	./.
chr1	25617251	rs17418085	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,4:35:10:0.400:2	./.	./.	./.	./.	./.	./.
chr1	25627552	rs1053355	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,79:33:166:0.476:2	0/1:57,56:33:113:0.496:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	25628043	rs1053356	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,63:33:130:0.485:2	0/1:42,36:32:78:0.462:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	25628073	rs1053359	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:33:135:0.030:2	0/1:80,3:35:83:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	25628088	rs1053360	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:31:133:0.030:2	0/1:85,4:32:89:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	25629830	rs150606530	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,75:32:170:0.441:2	0/1:56,35:32:91:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	25643553	rs199998930	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,2:32:2:1.00:2	./.	./.	0/1:0,2:29:2:1.00:2	./.	0/1:2,3:31:5:0.600:2	./.	./.	./.	./.	0/1:1,3:32:4:0.750:2
chr1	25669534	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,5:34:199:0.025:2	./.	./.
chr1	25712250	rs1053374	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,69:32:135:0.511:2	0/1:50,51:31:101:0.505:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	25715587	rs200423816	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,20:33:175:0.114:2	0/1:88,16:33:104:0.154:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	25717297	rs149352457	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,70:29:121:0.579:2	0/1:22,35:29:57:0.614:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	25717308	rs1053361	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,73:33:129:0.570:2	0/1:23,35:32:58:0.603:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	25729118	rs35109888	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,7:32:185:0.038:2	0/1:116,7:28:123:0.057:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	25735202	rs676785	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.
chr1	25737829	rs201618411	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,9:18:124:0.073:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,7:22:167:0.042:2
chr1	25747173	rs142971926	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,48:31:98:0.490:2	0/1:26,26:32:52:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	25747230	rs586178	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:31:2:1.00:2	0/1:70,7:31:77:0.091:2	0/1:84,9:30:93:0.097:2	0/1:81,11:32:92:0.120:2	0/1:94,9:31:103:0.087:2	0/1:85,9:31:94:0.096:2	./.	./.	./.
chr1	25889632	rs6687605	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,30:32:30:1.00:2	0/1:0,31:31:31:1.00:2	./.	0/1:31,34:32:65:0.523:2	./.	0/1:2,45:31:47:0.957:2	./.	0/1:43,27:31:70:0.386:2	0/1:38,35:33:73:0.479:2	0/1:31,19:32:50:0.380:2	0/1:0,52:31:52:1.00:2
chr1	25890189	rs28969504	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,36:28:37:0.973:2	0/1:0,20:28:20:1.00:2	./.	0/1:31,23:28:54:0.426:2	./.	0/1:0,55:29:55:1.00:2	./.	0/1:45,41:28:86:0.477:2	0/1:32,24:28:56:0.429:2	0/1:25,27:29:52:0.519:2	0/1:0,35:27:35:1.00:2
chr1	25890247	rs41291058	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,23:31:58:0.397:2	0/1:15,21:31:36:0.583:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	26073242	rs75075607	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,40:29:96:0.421:2	./.	./.	./.	./.	./.	./.	./.
chr1	26075769	rs146745645	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,61:32:142:0.430:2	./.	./.	./.	./.
chr1	26107481	rs141849223	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,24:31:63:0.381:2	./.	./.	./.	./.	./.	./.
chr1	26110236	rs79507311	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,7:31:23:0.304:2	./.	./.	./.	./.	./.	0/1:9,16:32:25:0.640:2
chr1	26110267	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	26131654	rs7349185	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,12:29:23:0.522:2	0/1:5,13:31:18:0.722:2	0/1:4,3:29:7:0.429:2	0/1:0,32:29:32:1.00:2	0/1:0,45:29:45:1.00:2	0/1:18,19:30:37:0.514:2	0/1:0,36:30:36:1.00:2	0/1:24,16:28:40:0.400:2	0/1:18,17:30:35:0.486:2	0/1:20,13:30:33:0.394:2	0/1:17,24:30:41:0.585:2
chr1	26135140	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,14:18:110:0.127:2	./.	./.	./.
chr1	26138032	rs148071754	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,31:32:58:0.534:2	./.	./.
chr1	26138262	rs760597	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:95,78:33:173:0.451:2	0/1:52,39:32:91:0.429:2	0/1:27,10:33:37:0.270:2	0/1:2,186:32:188:0.989:2	0/1:0,187:32:188:1.00:2	0/1:99,85:32:184:0.462:2	0/1:2,188:33:190:0.989:2	0/1:104,81:32:185:0.438:2	0/1:105,91:34:196:0.464:2	./.	0/1:122,67:33:189:0.354:2
chr1	26140573	rs2294228	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,23:31:56:0.411:2	0/1:10,15:31:25:0.600:2	0/1:6,5:31:11:0.455:2	0/1:0,71:31:71:1.00:2	0/1:0,91:30:91:1.00:2	0/1:48,49:31:98:0.505:2	0/1:0,88:31:88:1.00:2	0/1:60,49:30:109:0.450:2	0/1:38,37:31:75:0.493:2	./.	0/1:28,32:31:60:0.533:2
chr1	26163932	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:33:91:0.044:2	./.	./.
chr1	26189517	rs6689014	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,53:31:96:0.552:2	./.	./.	./.	./.	./.	./.
chr1	26357656	rs2736831	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,27:30:55:0.491:2	0/1:15,18:30:33:0.545:2	0/1:0,4:28:4:1.00:2	0/1:0,63:28:63:1.00:2	0/1:1,49:27:50:0.980:2	0/1:22,27:27:49:0.551:2	./.	0/1:1,47:27:48:0.979:2	0/1:35,46:29:81:0.568:2	0/1:30,28:28:58:0.483:2	./.
chr1	26357667	rs11247848	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,20:28:47:0.426:2	./.	0/1:41,33:30:74:0.446:2	./.	./.
chr1	26361669	rs61742342	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,13:30:19:0.684:2	./.	./.	./.	./.	./.
chr1	26361670	rs61739493	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,13:29:19:0.684:2	./.	./.	./.	./.	./.
chr1	26383711	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:33:126:0.032:2
chr1	26384127	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,6:32:71:0.085:2
chr1	26385003	rs2275950	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,105:33:196:0.538:2	./.	0/1:98,97:33:195:0.497:2	./.	./.
chr1	26392824	rs35123100	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,6:28:10:0.600:2	0/1:49,42:29:91:0.462:2	./.	./.	./.	0/1:72,50:29:122:0.410:2	./.	./.	./.
chr1	26440954	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:33:137:0.029:2	./.	./.
chr1	26448447	rs17257107	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,34:33:65:0.523:2	./.	./.	0/1:62,59:33:122:0.488:2	./.	./.
chr1	26448849	rs17356867	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,34:29:76:0.447:2	./.	./.	0/1:36,39:30:75:0.520:2	./.	./.
chr1	26487940	rs3748856	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:5,4:32:9:0.444:2	0/1:1,3:31:4:0.750:2	./.	0/1:9,8:32:17:0.471:2	./.	0/1:0,12:32:12:1.00:2	0/1:9,4:30:13:0.308:2	./.	./.	0/1:0,4:32:4:1.00:2	./.
chr1	26488019	rs3748857	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,18:30:38:0.474:2	./.	./.	./.
chr1	26488828	rs138228058	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:34:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	26496651	rs7087	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:34:3:0.667:2	./.	./.	./.
chr1	26510574	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:33:93:0.043:2	./.	./.
chr1	26511139	rs2297711	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:40,27:29:67:0.403:2	0/1:18,30:31:48:0.625:2	0/1:4,6:29:10:0.600:2	./.	./.	./.	./.	./.	0/1:70,53:31:123:0.431:2	./.	0/1:0,98:30:98:1.00:2
chr1	26515956	rs1045105	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,31:31:75:0.413:2	0/1:22,31:31:53:0.585:2	./.	./.	./.	./.	./.	./.	0/1:53,39:30:92:0.424:2	./.	0/1:2,117:30:119:0.983:2
chr1	26520292	rs12138368	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,9:31:13:0.692:2	0/1:57,49:31:106:0.462:2	./.	./.	./.	./.	0/1:95,60:32:155:0.387:2	./.	./.
chr1	26526439	rs17257155	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,71:29:147:0.483:2	./.	./.	./.	./.	./.
chr1	26526453	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:31:98:0.041:2	./.
chr1	26527863	rs17163674	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,97:30:98:0.990:2	0/1:1,63:31:64:0.984:2	./.	./.	./.	./.	./.	./.	0/1:65,95:31:161:0.594:2	./.	0/1:3,125:30:128:0.977:2
chr1	26527884	rs41310785	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,13:30:28:0.464:2	0/1:94,92:30:186:0.495:2	./.	./.	./.	./.	0/1:123,70:31:193:0.363:2	./.	./.
chr1	26527951	rs6657616	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,37:30:37:1.00:2	0/1:92,99:31:191:0.518:2	0/1:1,192:31:194:0.995:2	./.	0/1:98,96:30:194:0.495:2	0/1:113,84:31:197:0.426:2	./.	./.	./.
chr1	26582091	rs3795686	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:38,34:32:72:0.472:2	0/1:21,27:32:48:0.563:2	./.	0/1:43,46:31:89:0.517:2	./.	0/1:54,31:30:85:0.365:2	0/1:60,42:31:102:0.412:2	./.	./.	0/1:0,84:31:84:1.00:2	./.
chr1	26584211	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,3:34:67:0.045:2	./.	./.	./.	./.
chr1	26596080	rs7550997	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,12:31:37:0.324:2	./.	./.	0/1:30,13:32:43:0.302:2	./.	./.	0/1:30,22:30:52:0.423:2
chr1	26608814	rs6672357	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:29:3:1.00:2	0/1:0,2:29:2:1.00:2	./.	./.	./.	0/1:0,3:31:3:1.00:2	0/1:0,5:29:5:1.00:2	./.	0/1:0,3:32:3:1.00:2	0/1:0,4:24:4:1.00:2	0/1:0,3:29:3:1.00:2
chr1	26608828	rs1134584	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	0/1:0,2:34:2:1.00:2	./.	./.	./.	0/1:0,2:31:2:1.00:2	0/1:0,5:30:5:1.00:2	./.	./.	0/1:0,3:34:3:1.00:2	./.
chr1	26608843	rs151149897	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:34:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	26608883	rs1134580	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.	0/1:2,5:33:7:0.714:2
chr1	26608896	rs72872911	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,3:34:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	0/1:19,5:33:24:0.208:2	./.	0/1:7,3:34:10:0.300:2
chr1	26609259	rs7522905	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,41:30:81:0.506:2	0/1:28,24:31:52:0.462:2	0/1:2,14:31:16:0.875:2	0/1:0,102:31:102:1.00:2	0/1:76,61:31:137:0.445:2	0/1:1,115:31:116:0.991:2	0/1:0,116:31:116:1.00:2	./.	0/1:53,40:31:93:0.430:2	0/1:0,83:31:84:1.00:2	./.
chr1	26610891	rs4332350	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,138:31:138:1.00:2	0/1:1,86:30:87:0.989:2	0/1:0,34:29:34:1.00:2	0/1:1,188:31:189:0.995:2	0/1:1,190:30:191:0.995:2	0/1:0,187:30:187:1.00:2	0/1:2,187:31:189:0.989:2	0/1:121,77:31:198:0.389:2	0/1:0,189:31:189:1.00:2	0/1:0,182:31:182:1.00:2	0/1:0,175:30:175:1.00:2
chr1	26612042	rs11247898	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:32:31:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,36:31:36:1.00:2	0/1:1,37:31:38:0.974:2	0/1:1,39:32:40:0.975:2	0/1:22,20:31:42:0.476:2	0/1:0,40:33:40:1.00:2	0/1:0,41:32:41:1.00:2	0/1:1,30:33:31:0.968:2
chr1	26612460	rs11247900	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,32:30:89:0.360:2	./.	./.	0/1:66,54:31:120:0.450:2	./.	./.	0/1:50,36:30:86:0.419:2
chr1	26620806	rs56039743	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,23:32:51:0.460:2
chr1	26627478	rs2276712	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,104:29:104:1.00:2	0/1:0,76:29:76:1.00:2	0/1:0,23:30:24:1.00:2	0/1:0,146:27:147:1.00:2	0/1:108,69:27:177:0.390:2	0/1:1,169:28:172:0.994:2	0/1:5,165:27:171:0.971:2	0/1:105,72:28:177:0.407:2	0/1:0,167:28:168:1.00:2	0/1:0,101:26:101:1.00:2	0/1:81,59:27:142:0.421:2
chr1	26646726	rs1071849	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,43:32:44:0.977:2	0/1:0,24:33:24:1.00:2	0/1:0,5:34:5:1.00:2	0/1:0,58:33:58:1.00:2	0/1:35,18:33:53:0.340:2	0/1:0,52:33:52:1.00:2	0/1:0,41:33:41:1.00:2	0/1:51,17:33:68:0.250:2	0/1:0,56:34:56:1.00:2	0/1:0,38:33:38:1.00:2	0/1:36,25:33:62:0.410:2
chr1	26646730	rs17645	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,45:33:46:0.978:2	0/1:0,20:32:20:1.00:2	0/1:0,5:34:5:1.00:2	0/1:0,61:33:61:1.00:2	0/1:35,22:33:57:0.386:2	0/1:0,55:33:55:1.00:2	0/1:0,48:33:48:1.00:2	0/1:50,17:33:67:0.254:2	0/1:0,54:33:54:1.00:2	0/1:0,37:33:37:1.00:2	0/1:37,24:33:61:0.393:2
chr1	26648551	rs11247913	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:29:46:1.00:2	0/1:0,22:28:22:1.00:2	0/1:0,9:27:9:1.00:2	0/1:0,55:29:55:1.00:2	0/1:20,21:25:41:0.512:2	0/1:0,49:30:49:1.00:2	0/1:4,33:28:37:0.892:2	0/1:25,33:29:58:0.569:2	0/1:0,59:31:59:1.00:2	0/1:0,49:28:49:1.00:2	0/1:16,24:29:40:0.600:2
chr1	26650661	rs41305769	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,21:29:48:0.447:2	0/1:17,11:30:28:0.393:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,28:28:56:0.509:2
chr1	26658011	rs80177817	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,19:30:45:0.422:2	./.	./.	./.	./.	./.
chr1	26663362	rs10751735	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,20:31:32:0.625:2	0/1:11,17:30:28:0.607:2	./.	./.	0/1:36,64:30:100:0.640:2	0/1:34,38:30:72:0.528:2	./.	0/1:40,40:30:81:0.500:2	0/1:0,46:31:46:1.00:2	./.	0/1:0,28:31:28:1.00:2
chr1	26664968	rs11247919	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,14:31:26:0.538:2	0/1:25,24:31:49:0.490:2	./.	0/1:20,20:31:40:0.500:2	0/1:34,25:33:59:0.424:2	./.	0/1:25,19:33:44:0.432:2
chr1	26673076	rs11247924	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,19:30:37:0.528:2	0/1:5,9:30:14:0.643:2	0/1:0,5:30:5:1.00:2	0/1:25,25:30:50:0.500:2	0/1:21,22:29:43:0.512:2	./.	0/1:20,12:30:32:0.375:2	./.	0/1:18,19:30:37:0.514:2	./.	0/1:23,12:30:35:0.343:2
chr1	26673108	rs11247925	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,18:31:39:0.462:2	0/1:10,12:31:22:0.545:2	0/1:0,3:27:3:1.00:2	0/1:27,26:31:53:0.491:2	0/1:23,21:30:44:0.477:2	./.	0/1:21,12:31:33:0.364:2	./.	0/1:18,23:31:42:0.561:2	./.	0/1:29,17:28:46:0.370:2
chr1	26688181	rs11583897	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,29:31:73:0.397:2	./.	./.	./.	./.	./.	./.
chr1	26691174	rs11247933	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:39,23:33:62:0.371:2	0/1:18,15:32:33:0.455:2	./.	0/1:45,37:32:82:0.451:2	./.	0/1:27,29:31:56:0.518:2	0/1:5,66:32:71:0.930:2	./.	./.	0/1:1,89:32:90:0.989:2	./.
chr1	26691633	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,5:33:26:0.192:2	./.	./.
chr1	26694245	rs10794531	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,7:29:9:0.778:2	0/1:54,43:29:97:0.443:2	0/1:0,109:29:109:1.00:2	./.	./.	./.	./.	./.	0/1:46,22:27:68:0.324:2
chr1	26694260	rs10794532	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,51:31:105:0.486:2	./.	./.	./.	./.	./.	0/1:42,23:32:65:0.354:2
chr1	26699051	rs6699091	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,11:31:15:0.733:2	0/1:18,21:30:39:0.538:2	0/1:41,34:31:75:0.453:2	./.	./.	./.	./.	./.	./.
chr1	26700795	rs7520030	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:32:35:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,51:33:51:1.00:2	0/1:0,73:32:74:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,47:32:47:1.00:2
chr1	26786627	rs3816539	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,39:31:91:0.429:2	0/1:56,44:30:100:0.440:2	0/1:0,74:31:74:1.00:2	./.	0/1:69,47:31:117:0.405:2	./.	./.	./.
chr1	26799063	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.
chr1	26799095	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.
chr1	26879920	rs4970490	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:30:53:1.00:2	0/1:0,23:29:23:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,66:29:66:1.00:2	0/1:0,74:29:74:1.00:2	0/1:1,55:30:56:0.982:2	0/1:0,77:30:78:1.00:2	0/1:0,88:30:88:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,54:30:55:1.00:2
chr1	26881675	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:32:79:0.051:2	./.	./.	./.
chr1	26883511	rs2229712	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:40,31:30:71:0.437:2	0/1:23,19:29:42:0.452:2	0/1:8,7:28:15:0.467:2	./.	0/1:100,89:29:189:0.471:2	./.	0/1:93,97:29:192:0.511:2	./.	./.	./.	0/1:51,44:30:95:0.463:2
chr1	26887536	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:34:94:0.043:2
chr1	26887577	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,5:27:99:0.051:2	./.	./.	./.	./.
chr1	26887592	rs1064196	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,48:29:98:0.490:2	0/1:34,34:28:68:0.500:2	0/1:0,59:28:59:1.00:2	0/1:43,34:28:77:0.442:2	0/1:40,38:30:78:0.487:2	./.	0/1:40,29:29:69:0.420:2	./.
chr1	26900920	rs12118436	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,30:29:50:0.600:2	./.	./.	./.	./.	./.	./.	./.
chr1	27089710	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:32:145:0.028:2	./.	./.	./.
chr1	27101350	rs146171057	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,5:31:134:0.037:2	./.	./.	./.	./.
chr1	27101380	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:123,12:17:135:0.089:2	./.	./.	./.	./.	./.	./.	./.
chr1	27101408	.	A	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:124,7:26:131:0.053:2	./.	0/1:133,6:23:139:0.043:2	0/1:121,5:26:126:0.040:2	./.	0/1:106,5:25:111:0.045:2	./.
chr1	27175157	rs146160422	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,67:31:125:0.540:2
chr1	27190324	rs11542704	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,52:32:111:0.468:2	./.	0/1:42,51:31:93:0.548:2
chr1	27190855	rs112547702	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,71:26:175:0.406:2	0/1:156,8:23:164:0.049:2	./.	./.	./.
chr1	27190857	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:101,8:31:109:0.073:2	./.	./.	./.	0/1:148,12:32:160:0.075:2	./.	./.	./.	./.	./.	./.
chr1	27210721	rs3170660	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,66:29:67:1.00:2	0/1:0,34:28:34:1.00:2	./.	0/1:2,84:30:86:0.977:2	0/1:0,80:29:80:1.00:2	0/1:0,78:29:79:1.00:2	0/1:0,109:29:109:1.00:2	0/1:48,59:29:107:0.551:2	0/1:56,51:30:107:0.477:2	0/1:39,26:28:65:0.400:2	0/1:68,30:28:99:0.306:2
chr1	27215515	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.	./.	./.	./.
chr1	27219896	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,55:32:134:0.410:2
chr1	27223967	rs35243557	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,46:31:109:0.422:2
chr1	27226873	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,4:29:40:0.100:2	./.	./.	./.	./.	./.	./.	./.
chr1	27239920	rs6659176	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,74:28:165:0.451:2	./.	0/1:69,74:28:143:0.517:2
chr1	27268249	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:190,5:27:195:0.026:2	./.	./.	./.	./.	./.	./.
chr1	27268303	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:127,4:31:131:0.031:2	./.	./.	./.	./.	./.	./.
chr1	27269437	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,34:32:70:0.486:2
chr1	27269519	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,29:32:134:0.216:2	./.	./.	./.	./.	./.	./.
chr1	27277189	rs377244173	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:33:61:0.066:2	./.
chr1	27278521	rs3010110	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,53:30:126:0.421:2	./.	./.	0/1:0,124:31:124:1.00:2	./.	./.	0/1:38,48:31:86:0.558:2	./.
chr1	27278553	rs3010109	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,35:30:81:0.432:2	./.	./.	0/1:0,87:30:87:1.00:2	./.	./.	./.	./.
chr1	27278573	rs17360994	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,23:29:40:0.575:2	./.	0/1:17,12:25:29:0.414:2
chr1	27332465	rs61737591	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,82:31:187:0.439:2	./.	./.
chr1	27332466	rs61737590	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,82:29:186:0.441:2	./.	0/1:98,65:27:163:0.399:2
chr1	27332877	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,8:29:19:0.421:2	./.	./.	./.	./.
chr1	27333347	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,5:32:180:0.028:2	./.	./.	./.
chr1	27426796	rs4266911	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:31:36:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,35:30:35:1.00:2
chr1	27427041	rs4418629	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,108:33:108:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,143:32:143:1.00:2	0/1:0,157:32:157:1.00:2	0/1:0,176:32:176:1.00:2	0/1:0,184:33:184:1.00:2	0/1:0,189:33:189:1.00:2	0/1:0,155:34:155:1.00:2	0/1:0,138:32:138:1.00:2	0/1:0,122:32:122:1.00:2
chr1	27480757	rs34306208	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,52:30:104:0.500:2	./.	./.	0/1:62,53:29:116:0.461:2	./.	0/1:1,78:30:79:0.987:2	0/1:2,66:30:68:0.971:2	./.
chr1	27660731	rs6663062	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:90,99:32:189:0.524:2	./.	./.	./.	./.	./.	./.
chr1	27661952	rs150461998	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,52:31:87:0.598:2	./.	./.	./.	./.	./.	./.
chr1	27676752	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:120,4:32:124:0.032:2	./.	./.	./.	./.	./.	./.
chr1	27676925	rs6702341	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,17:30:35:0.486:2	0/1:11,9:31:20:0.450:2	0/1:3,3:30:6:0.500:2	0/1:25,20:29:45:0.444:2	0/1:20,21:26:41:0.512:2	./.	0/1:27,29:30:56:0.518:2	./.	0/1:16,19:31:35:0.543:2	0/1:17,23:30:40:0.575:2	./.
chr1	27677409	rs113120872	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,36:29:60:0.600:2	0/1:17,13:29:30:0.433:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	27679797	rs3813795	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,91:29:92:0.989:2	0/1:0,64:28:64:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,151:29:151:1.00:2	0/1:116,58:28:174:0.333:2	./.	0/1:3,124:30:127:0.976:2	./.	0/1:64,59:30:123:0.480:2	0/1:2,115:29:117:0.983:2	0/1:48,35:29:83:0.422:2
chr1	27679954	rs1128918	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,28:31:45:0.622:2	0/1:6,16:32:22:0.727:2	0/1:4,4:31:8:0.500:2	0/1:21,13:33:34:0.382:2	0/1:14,12:30:26:0.462:2	./.	0/1:6,8:31:14:0.571:2	./.	0/1:13,12:33:25:0.480:2	0/1:12,7:33:19:0.368:2	./.
chr1	27680292	rs8533	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:32:85:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,176:32:176:1.00:2	0/1:1,142:32:143:0.993:2	./.	0/1:3,144:32:147:0.980:2	0/1:175,10:33:185:0.054:2	0/1:77,56:33:133:0.421:2	0/1:60,73:32:133:0.549:2	0/1:61,58:32:119:0.487:2
chr1	27681785	rs72882730	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:31:59:0.068:2	./.	./.
chr1	27682530	rs17162549	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,85:31:195:0.438:2	./.	./.	./.	./.	./.	./.
chr1	27687466	rs35659744	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:8,16:27:24:0.667:2	0/1:8,7:31:15:0.467:2	0/1:1,4:31:5:0.800:2	./.	./.	./.	0/1:2,14:30:16:0.875:2	./.	./.	./.	0/1:6,9:28:15:0.600:2
chr1	27688633	rs1138294	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,64:30:120:0.533:2	0/1:30,31:31:62:0.508:2	0/1:10,9:30:19:0.474:2	0/1:71,69:31:140:0.493:2	0/1:82,65:31:147:0.442:2	0/1:152,5:31:158:0.032:2	0/1:86,96:31:182:0.527:2	./.	0/1:73,112:32:185:0.605:2	0/1:72,56:32:128:0.438:2	./.
chr1	27695922	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:34:89:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	27709020	rs2504779	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,25:30:46:0.543:2	0/1:19,14:29:33:0.424:2	./.	0/1:31,15:30:46:0.326:2	./.	./.	./.
chr1	27720322	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:34:76:0.053:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	27720356	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,19:32:43:0.442:2	./.
chr1	27875824	rs4908364	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,85:30:85:1.00:2	0/1:0,116:31:116:1.00:2	0/1:0,112:31:112:1.00:2	0/1:0,107:31:107:1.00:2	0/1:0,106:30:108:1.00:2	0/1:0,124:31:125:1.00:2	0/1:2,74:30:76:0.974:2	0/1:0,53:31:53:1.00:2
chr1	27876482	rs2076457	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,31:32:50:0.620:2	0/1:12,9:32:21:0.429:2	0/1:7,3:32:10:0.300:2	0/1:30,26:30:56:0.464:2	0/1:18,26:30:44:0.591:2	0/1:1,64:31:65:0.985:2	0/1:0,32:31:32:1.00:2	0/1:0,43:31:43:1.00:2	0/1:18,35:33:53:0.660:2	0/1:0,58:32:58:1.00:2	0/1:0,26:31:27:1.00:2
chr1	27876493	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:28:51:0.078:2	./.
chr1	27877418	rs113173951	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	./.	./.	./.	./.
chr1	27878162	rs112179924	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,59:30:109:0.541:2	./.	0/1:76,78:30:154:0.506:2	./.	./.	./.
chr1	28209002	rs76072311	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,44:30:85:0.518:2	./.	./.	./.	./.
chr1	28209305	rs3766398	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,40:32:95:0.421:2	0/1:42,39:32:81:0.481:2	0/1:8,12:31:20:0.600:2	0/1:0,146:32:147:1.00:2	0/1:4,170:32:174:0.977:2	0/1:0,144:32:145:1.00:2	0/1:108,81:33:189:0.429:2	0/1:3,161:32:164:0.982:2	0/1:77,70:33:147:0.476:2	0/1:1,99:31:100:0.990:2	0/1:70,49:31:119:0.412:2
chr1	28209362	rs3766399	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,35:28:92:0.380:2	0/1:35,36:28:71:0.507:2	0/1:5,8:28:13:0.615:2	0/1:1,98:28:99:0.990:2	0/1:1,107:27:108:0.991:2	0/1:0,96:27:96:1.00:2	0/1:87,43:28:130:0.331:2	0/1:0,114:28:114:1.00:2	0/1:79,47:29:126:0.373:2	0/1:1,82:28:83:0.988:2	0/1:73,45:28:118:0.381:2
chr1	28209366	rs3766400	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,35:32:88:0.398:2	0/1:33,34:32:67:0.507:2	0/1:4,6:32:10:0.600:2	0/1:1,91:32:92:0.989:2	0/1:1,97:31:98:0.990:2	0/1:0,90:31:90:1.00:2	0/1:80,46:32:126:0.365:2	0/1:0,107:32:107:1.00:2	0/1:74,41:32:115:0.357:2	0/1:1,77:31:78:0.987:2	0/1:70,44:31:114:0.386:2
chr1	28224195	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,6:29:153:0.039:2
chr1	28240892	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:32:78:0.051:2	./.	./.	./.	./.	./.
chr1	28261701	rs377416441	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,28:31:83:0.337:2	./.	./.
chr1	28268829	rs138466566	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,9:17:96:0.094:2	./.	./.
chr1	28268835	rs371186360	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,68:32:70:0.986:2	0/1:0,24:32:25:1.00:2	0/1:0,12:31:12:1.00:2	0/1:63,34:33:97:0.351:2	0/1:64,55:33:119:0.462:2	0/1:0,97:32:97:1.00:2	0/1:78,53:32:131:0.405:2	0/1:78,54:32:132:0.409:2	0/1:1,110:33:111:0.991:2	0/1:54,37:32:91:0.407:2	0/1:44,43:32:87:0.494:2
chr1	28280970	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,38:31:92:0.413:2	./.	./.	./.	./.	./.
chr1	28282206	rs3813804	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,17:31:51:0.333:2	0/1:28,14:32:42:0.333:2	./.	./.	./.	0/1:36,24:30:60:0.400:2	0/1:27,33:31:60:0.550:2	0/1:38,42:30:80:0.525:2	./.	0/1:31,19:31:50:0.380:2	./.
chr1	28282292	rs3813803	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,37:32:106:0.349:2	0/1:4,98:31:102:0.961:2	./.	0/1:74,55:32:129:0.426:2	0/1:70,41:31:111:0.369:2	./.	./.	./.
chr1	28282307	rs35908659	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,57:31:108:0.528:2
chr1	28290139	rs147855072	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,53:31:111:0.477:2	./.	./.	./.
chr1	28293171	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:32:159:0.025:2	./.	./.	./.	./.	./.
chr1	28293210	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:31:133:0.030:2	./.	./.	./.	./.	./.
chr1	28354323	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:156,4:32:160:0.025:2	./.	./.	./.	./.	./.	./.
chr1	28362075	rs190278796	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,88:32:200:0.440:2	./.	./.	./.	./.	./.	./.	./.
chr1	28476710	rs140347568	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:32:121:0.033:2	./.	./.	./.	./.
chr1	28476765	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:34:96:0.042:2
chr1	28531819	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,6:31:101:0.059:2	./.	./.	./.
chr1	28536512	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:31:94:0.043:2	./.	./.	./.	./.
chr1	28536526	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,6:30:84:0.071:2	./.	./.	./.	./.
chr1	28555535	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,15:32:41:0.366:2	0/1:16,13:32:29:0.448:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	28564252	rs8559	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:53,35:33:88:0.398:2	0/1:26,24:33:50:0.480:2	./.	0/1:43,59:32:102:0.578:2	0/1:52,38:32:90:0.422:2	0/1:0,85:32:85:1.00:2	./.	0/1:2,88:31:90:0.978:2	./.	0/1:38,27:31:65:0.415:2	./.
chr1	28564279	rs9508	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:67,40:31:107:0.374:2	0/1:32,24:29:56:0.429:2	./.	./.	0/1:48,36:29:84:0.429:2	0/1:0,86:30:86:1.00:2	./.	0/1:2,102:29:104:0.981:2	./.	0/1:44,37:29:81:0.457:2	./.
chr1	28586376	rs34315986	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	28733993	rs12091029	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,25:31:79:0.316:2	0/1:31,11:32:42:0.262:2	0/1:0,61:31:61:1.00:2	0/1:29,21:31:50:0.420:2	0/1:51,33:31:84:0.393:2	./.	0/1:44,24:32:68:0.353:2	./.
chr1	28793041	rs11539548	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,83:31:146:0.568:2	./.	0/1:102,75:32:177:0.424:2	./.	./.	./.
chr1	28793149	rs61748637	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,24:30:71:0.338:2	./.	./.
chr1	28800277	rs36099122	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,61:30:110:0.555:2	./.	0/1:71,55:30:126:0.437:2	./.	./.	./.
chr1	28800380	rs61785974	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,11:29:17:0.647:2	0/1:10,10:30:20:0.500:2	0/1:11,13:30:24:0.542:2	0/1:10,9:29:19:0.474:2	./.	./.	0/1:8,5:31:13:0.385:2	./.
chr1	28807009	rs377530308	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,46:32:110:0.418:2	./.	./.
chr1	28861636	rs2066726	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,76:29:184:0.415:2	0/1:109,86:29:195:0.441:2	0/1:73,87:29:160:0.544:2	./.	./.	./.	0/1:95,87:30:184:0.478:2	./.
chr1	28864435	rs2227977	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,59:33:145:0.407:2	./.	0/1:84,43:32:127:0.339:2	./.	./.	./.
chr1	28920855	rs115996155	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,13:33:21:0.619:2	0/1:10,4:32:14:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,20:33:28:0.714:2
chr1	28921199	rs4654341	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,58:33:118:0.492:2	0/1:71,71:32:142:0.500:2	0/1:72,76:32:148:0.514:2	./.	./.	./.	./.	./.
chr1	28921480	rs115638881	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:30:10:0.600:2	./.	./.	./.	./.	./.	0/1:49,48:32:97:0.495:2	./.	./.
chr1	29041183	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:30:118:0.034:2	./.	./.	./.	./.
chr1	29064797	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:33:181:0.022:2	./.	./.	./.
chr1	29069312	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:32:199:0.020:2	./.	./.	./.	./.
chr1	29185796	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:161,6:33:167:0.036:2	./.	./.	./.	./.	./.	./.
chr1	29189597	rs2234918	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,27:32:43:0.628:2	0/1:9,10:31:19:0.526:2	./.	0/1:9,23:31:32:0.719:2	0/1:0,35:29:35:1.00:2	0/1:17,36:30:54:0.679:2	0/1:0,26:30:26:1.00:2	0/1:17,17:30:34:0.500:2	0/1:0,34:31:34:1.00:2	./.	./.
chr1	29320013	rs111642750	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,16:32:47:0.340:2	./.	./.	./.	0/1:0,80:32:80:1.00:2
chr1	29379802	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.	./.	./.	./.	./.
chr1	29387014	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:34:157:0.025:2
chr1	29442291	rs536178	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,34:32:86:0.395:2	./.	0/1:21,32:33:53:0.604:2	./.
chr1	29447699	rs56040456	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,33:31:33:1.00:2	0/1:0,20:30:20:1.00:2	./.	./.	./.	./.	./.	./.	0/1:18,13:32:31:0.419:2	./.	./.
chr1	29475341	rs2230678	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,23:32:63:0.365:2	0/1:30,21:32:51:0.412:2	0/1:5,6:33:11:0.545:2	0/1:1,121:32:122:0.992:2	0/1:1,113:32:114:0.991:2	0/1:0,76:32:76:1.00:2	0/1:114,62:32:176:0.352:2	0/1:0,120:31:120:1.00:2	0/1:56,52:32:108:0.481:2	0/1:0,77:32:77:1.00:2	0/1:0,77:30:77:1.00:2
chr1	29475394	rs2230677	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,13:28:52:0.250:2	0/1:29,17:29:46:0.370:2	0/1:4,5:29:9:0.556:2	0/1:1,91:29:92:0.989:2	0/1:1,74:28:75:0.987:2	0/1:0,75:30:75:1.00:2	0/1:69,48:30:117:0.410:2	0/1:0,87:29:87:1.00:2	0/1:46,37:31:83:0.446:2	0/1:0,65:31:65:1.00:2	0/1:1,61:28:62:0.984:2
chr1	29475648	rs2230679	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:31:65:1.00:2	0/1:0,49:31:49:1.00:2	0/1:2,8:32:10:0.800:2	0/1:0,82:32:82:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,77:31:77:1.00:2	0/1:21,34:30:55:0.618:2	0/1:0,82:31:82:1.00:2	0/1:51,31:32:82:0.378:2	0/1:0,64:31:64:1.00:2	0/1:0,82:31:82:1.00:2
chr1	29529699	rs1062924	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:29:62:1.00:2	0/1:0,40:29:40:1.00:2	0/1:8,7:30:15:0.467:2	0/1:2,87:29:89:0.978:2	0/1:1,99:29:100:0.990:2	0/1:0,77:29:77:1.00:2	0/1:50,40:29:90:0.444:2	0/1:1,75:29:76:0.987:2	0/1:44,38:31:82:0.463:2	0/1:0,66:30:67:1.00:2	0/1:0,64:29:64:1.00:2
chr1	29542637	rs1128400	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:32:39:1.00:2	0/1:0,23:32:23:1.00:2	0/1:3,5:30:8:0.625:2	0/1:0,51:31:51:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,56:31:56:1.00:2	0/1:42,24:32:66:0.364:2	0/1:1,57:32:58:0.983:2	0/1:41,32:32:73:0.438:2	0/1:0,46:32:46:1.00:2	0/1:0,47:31:47:1.00:2
chr1	29585286	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:31:108:0.037:2	./.	./.	./.
chr1	29587407	rs72649292	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.	./.	./.
chr1	29602091	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,8:20:149:0.054:2	./.
chr1	29630455	rs2295061	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,57:30:108:0.528:2	./.	0/1:65,51:30:116:0.440:2	0/1:33,46:31:79:0.582:2	0/1:36,30:31:66:0.455:2	./.
chr1	29630554	rs61733825	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,12:30:20:0.600:2	./.	./.	./.	./.	./.	0/1:58,48:29:106:0.453:2	./.	./.
chr1	29631909	rs2235937	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,11:32:28:0.393:2	0/1:10,7:32:17:0.412:2	./.	./.	0/1:39,27:32:67:0.409:2	0/1:27,19:32:46:0.413:2	0/1:36,37:32:73:0.507:2	0/1:50,36:33:86:0.419:2	./.	0/1:23,18:31:41:0.439:2	0/1:4,44:30:48:0.917:2
chr1	29637318	rs6671919	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,66:30:142:0.465:2	./.	./.	./.	./.	./.	./.
chr1	29639087	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:32:155:0.026:2	./.
chr1	29644328	rs1045453	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,18:30:30:0.600:2	./.
chr1	31188089	rs1065755	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,20:31:20:1.00:2	0/1:77,101:31:178:0.567:2	./.	./.	0/1:86,72:31:158:0.456:2	0/1:88,96:31:184:0.522:2	0/1:76,69:32:146:0.476:2	0/1:2,143:31:145:0.986:2	./.
chr1	31188901	rs20566	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:31:7:1.00:2	0/1:61,31:30:92:0.337:2	./.	0/1:42,39:31:81:0.481:2	0/1:42,33:29:75:0.440:2	0/1:55,47:29:102:0.461:2	0/1:48,29:30:77:0.377:2	0/1:0,62:30:62:1.00:2	./.
chr1	31189690	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:26:45:0.089:2
chr1	31208042	rs35351292	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:30:2:1.00:2	0/1:40,29:31:69:0.420:2	./.	./.	./.	./.	0/1:20,19:32:39:0.487:2	0/1:0,35:32:35:1.00:2	./.
chr1	31215364	rs1050663	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:30:10:0.400:2	0/1:0,127:29:127:1.00:2	0/1:73,54:30:127:0.425:2	0/1:0,99:30:99:1.00:2	0/1:0,133:30:133:1.00:2	0/1:68,58:30:126:0.460:2	0/1:2,95:31:97:0.979:2	0/1:0,70:29:70:1.00:2	0/1:49,29:30:78:0.372:2
chr1	31346199	rs1539360	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,40:29:66:0.606:2	./.	0/1:37,36:29:73:0.493:2	./.	./.	0/1:22,24:26:47:0.522:2
chr1	31347399	rs4949184	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:37,27:30:64:0.422:2	0/1:46,31:31:77:0.403:2	0/1:33,28:31:61:0.459:2	0/1:30,28:32:58:0.483:2	./.	./.	0/1:25,37:30:62:0.597:2	./.
chr1	31349642	rs41269521	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,18:31:37:0.486:2	./.	0/1:11,30:30:41:0.732:2	./.	./.	0/1:9,8:30:17:0.471:2
chr1	31349647	rs2491132	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,18:31:39:0.462:2	0/1:11,30:31:41:0.732:2	0/1:12,33:30:45:0.733:2	./.	0/1:11,15:31:26:0.577:2	0/1:11,9:29:20:0.450:2
chr1	31351513	rs1891419	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,40:32:77:0.519:2	./.	0/1:49,31:32:80:0.388:2	0/1:49,53:32:102:0.520:2	./.	0/1:55,44:33:99:0.444:2	0/1:24,26:32:50:0.520:2	./.
chr1	31423077	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,4:31:143:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr1	31426815	rs2275741	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:29:8:1.00:2	0/1:24,25:31:49:0.510:2	0/1:43,37:30:80:0.463:2	0/1:2,66:29:68:0.971:2	0/1:47,42:29:89:0.472:2	./.	0/1:49,30:29:79:0.380:2	./.	./.
chr1	31658130	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:32:177:0.023:2	./.	./.
chr1	31660926	rs142100553	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,54:31:139:0.388:2	./.	./.	./.	./.	./.
chr1	31732892	rs2292165	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,23:33:52:0.451:2	./.	./.	./.	./.	./.	./.	./.
chr1	31740706	rs3753373	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,24:30:50:0.480:2	./.	0/1:20,24:31:44:0.545:2	./.	0/1:41,27:30:68:0.397:2	./.	./.	./.
chr1	31842320	rs2228194	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,91:33:195:0.467:2	0/1:98,83:33:181:0.459:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	31883295	rs6701521	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,6:32:16:0.375:2	0/1:0,132:32:132:1.00:2	./.	0/1:80,70:32:151:0.467:2	0/1:90,65:32:155:0.419:2	0/1:2,175:31:177:0.989:2	./.	./.	./.
chr1	31897643	rs2275437	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,77:30:128:0.602:2	0/1:72,89:30:161:0.553:2	./.	./.	./.
chr1	31898234	rs4949402	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,125:32:126:0.992:2	0/1:0,84:32:84:1.00:2	0/1:8,13:33:21:0.619:2	./.	0/1:1,129:32:130:0.992:2	0/1:84,68:33:152:0.447:2	0/1:92,67:33:159:0.421:2	./.	0/1:0,152:34:152:1.00:2	0/1:0,151:32:151:1.00:2	0/1:0,145:32:145:1.00:2
chr1	31898639	rs35976845	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,81:30:183:0.443:2	./.	./.	./.	0/1:0,129:30:129:1.00:2	0/1:57,52:30:109:0.477:2
chr1	31898687	rs2275434	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,40:33:113:0.354:2	./.	./.
chr1	31902279	rs34728687	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,10:32:15:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	31905883	rs201239431	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,7:32:80:0.088:2	./.	./.
chr1	32044832	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:33:170:0.024:2	./.
chr1	32084904	rs1056526	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:61,45:31:106:0.425:2	0/1:35,30:31:65:0.462:2	0/1:8,9:31:17:0.529:2	./.	0/1:111,82:30:193:0.425:2	0/1:72,55:30:128:0.433:2	./.	0/1:2,163:31:165:0.988:2	0/1:74,83:31:157:0.529:2	0/1:52,59:31:111:0.532:2	0/1:1,112:31:113:0.991:2
chr1	32092525	rs2271933	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:17,12:31:29:0.414:2	0/1:10,18:30:28:0.643:2	0/1:6,7:30:13:0.538:2	./.	0/1:18,23:31:41:0.561:2	0/1:37,19:29:56:0.339:2	./.	0/1:0,58:30:58:1.00:2	0/1:20,24:32:44:0.545:2	0/1:20,11:29:31:0.355:2	0/1:0,39:30:39:1.00:2
chr1	32096265	rs1061770	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:33,25:33:58:0.431:2	0/1:17,17:32:34:0.500:2	./.	./.	0/1:74,70:32:144:0.486:2	0/1:53,34:31:87:0.391:2	./.	0/1:7,86:33:93:0.925:2	0/1:51,48:31:99:0.485:2	0/1:36,37:33:73:0.507:2	0/1:0,67:33:67:1.00:2
chr1	32127911	rs2271927	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,24:32:42:0.571:2	0/1:10,15:32:25:0.600:2	0/1:3,7:31:10:0.700:2	0/1:0,78:32:78:1.00:2	0/1:20,34:32:54:0.630:2	0/1:15,37:31:52:0.712:2	0/1:0,72:31:72:1.00:2	0/1:49,3:33:52:0.058:2	0/1:11,26:31:37:0.703:2	0/1:14,23:32:37:0.622:2	./.
chr1	32127953	rs2271928	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,30:31:60:0.500:2	0/1:11,25:32:36:0.694:2	0/1:8,7:31:15:0.467:2	0/1:1,113:31:114:0.991:2	0/1:39,51:30:90:0.567:2	0/1:45,52:31:97:0.536:2	0/1:0,112:31:112:1.00:2	./.	0/1:37,45:32:82:0.549:2	0/1:27,40:32:67:0.597:2	./.
chr1	32131163	rs1356803	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,21:32:43:0.488:2	0/1:11,13:32:24:0.542:2	./.	./.	0/1:33,27:32:60:0.450:2	0/1:31,41:32:72:0.569:2	./.	0/1:0,52:32:52:1.00:2	0/1:31,23:33:54:0.426:2	0/1:27,19:32:46:0.413:2	0/1:0,54:31:54:1.00:2
chr1	32138045	rs2228553	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,30:32:59:0.508:2	./.	./.	./.	./.	./.	./.
chr1	32148555	rs202008728	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,36:30:62:0.581:2	0/1:18,12:30:30:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	32148571	rs10737358	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:31:56:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,74:29:74:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,61:30:61:1.00:2	0/1:0,64:30:64:1.00:2	0/1:0,85:29:85:1.00:2	0/1:0,83:30:83:1.00:2	0/1:0,55:29:55:1.00:2	0/1:0,82:30:82:1.00:2
chr1	32149773	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,14:31:20:0.700:2	./.	./.	./.
chr1	32150411	rs78189411	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,9:30:15:0.600:2	0/1:16,10:31:26:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	32151299	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,23:31:168:0.137:2	./.
chr1	32154060	rs373299517	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:33:64:0.063:2	./.
chr1	32158374	rs3818788	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,36:28:77:0.468:2	0/1:29,26:29:55:0.473:2	0/1:0,8:30:8:1.00:2	0/1:0,72:29:72:1.00:2	0/1:1,64:30:65:0.985:2	0/1:59,43:30:103:0.422:2	./.	0/1:39,39:29:78:0.500:2	0/1:0,101:30:101:1.00:2	0/1:29,31:30:60:0.517:2	./.
chr1	32159716	rs41303411	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,33:31:85:0.388:2
chr1	32161754	rs200800666	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,20:31:34:0.588:2	./.	./.	./.	./.
chr1	32162812	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,5:28:77:0.065:2	./.	./.	./.	./.	./.
chr1	32163647	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:32:139:0.029:2	./.	./.	./.	./.
chr1	32164206	rs2228550	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,19:31:34:0.559:2	0/1:8,10:31:18:0.556:2	0/1:0,5:31:5:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,23:30:23:1.00:2	./.	./.	0/1:12,16:31:28:0.571:2	0/1:0,35:31:35:1.00:2	0/1:15,13:31:28:0.464:2	./.
chr1	32165495	rs2228552	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:71,58:32:129:0.450:2	0/1:46,36:32:82:0.439:2	./.	0/1:0,156:32:156:1.00:2	0/1:5,125:32:130:0.962:2	./.	./.	0/1:106,91:32:197:0.462:2	0/1:1,152:32:153:0.993:2	0/1:81,44:32:125:0.352:2	./.
chr1	32193647	rs1127100	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:6,4:29:10:0.400:2	./.	./.	0/1:0,6:32:6:1.00:2	./.	./.	./.	0/1:7,4:30:11:0.364:2	0/1:0,2:31:2:1.00:2	0/1:6,3:31:9:0.333:2	./.
chr1	32196889	rs10914473	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:61,56:31:117:0.479:2	0/1:44,33:30:77:0.429:2	./.	0/1:75,76:31:151:0.503:2	./.	./.	./.	./.	./.	./.	./.
chr1	32221802	rs147586249	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,14:31:24:0.583:2	./.	./.	./.	./.	./.	./.	./.
chr1	32259791	rs34341430	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,86:31:188:0.457:2	./.	./.	./.	./.	./.	./.
chr1	32264223	rs201900130	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,16:31:30:0.533:2	./.	./.	./.	./.	./.
chr1	32279629	rs6669563	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:44,21:33:65:0.323:2	0/1:22,14:32:36:0.389:2	0/1:2,3:32:5:0.600:2	./.	0/1:37,37:31:74:0.500:2	./.	0/1:0,73:32:73:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,68:33:68:1.00:2	0/1:37,26:33:63:0.413:2	0/1:0,93:32:94:1.00:2
chr1	32280369	rs35533335	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:31:9:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	32280610	rs6664445	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:26,14:32:40:0.350:2	0/1:10,20:32:30:0.667:2	./.	./.	0/1:21,10:32:32:0.323:2	0/1:0,47:32:47:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,31:34:31:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,33:32:33:1.00:2
chr1	32381501	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.
chr1	32381566	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,6:30:104:0.058:2	./.	./.	./.
chr1	32495999	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:31:153:0.026:2	./.	./.	./.	./.
chr1	32557486	rs744455	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,75:29:125:0.610:2	./.	./.
chr1	32636462	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:29:68:0.059:2
chr1	32669645	rs41263993	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,21:32:37:0.568:2	./.	./.	./.	./.	./.
chr1	32672908	rs3903683	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,44:32:103:0.427:2	./.	./.
chr1	32672932	rs12032332	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,11:29:14:0.786:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	32674724	rs139959094	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,36:31:86:0.419:2
chr1	32682781	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,41:32:89:0.461:2	./.	./.	./.
chr1	32686757	rs183590772	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,48:31:91:0.527:2	./.	./.	./.	./.	./.	./.
chr1	32694819	rs72666792	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,34:33:75:0.453:2	./.	./.
chr1	32713199	rs2291063	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,57:33:106:0.538:2	./.	./.
chr1	32741635	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:31:98:0.041:2	./.
chr1	32745560	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:147,5:28:152:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr1	32829350	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,5:32:66:0.076:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	32829704	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,88:32:174:0.506:2	./.	./.	./.	./.	./.
chr1	32843890	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,19:32:41:0.463:2	./.
chr1	32849437	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:33:138:0.029:2	./.	./.	./.	./.	./.
chr1	33059062	rs190749106	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,9:30:23:0.391:2	./.	./.	./.	./.	./.	./.
chr1	33065947	rs704886	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:33:76:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,99:33:99:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,86:33:86:1.00:2	0/1:0,132:33:132:1.00:2	0/1:0,102:34:102:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,77:34:77:1.00:2
chr1	33099285	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:32:91:0.044:2	./.	./.	./.	./.	./.
chr1	33099294	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:32:86:0.047:2	./.	./.	./.	./.	./.
chr1	33099637	rs704878	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,5:31:122:0.041:2	./.	0/1:57,37:31:94:0.394:2
chr1	33117612	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,3:32:41:0.073:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	33133968	rs2762904	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,132:33:132:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,159:33:159:1.00:2	0/1:0,110:32:110:1.00:2	0/1:0,130:33:130:1.00:2	0/1:0,115:33:115:1.00:2	0/1:0,132:33:133:1.00:2	0/1:1,134:34:135:0.993:2	0/1:0,144:33:144:1.00:2	0/1:0,114:33:114:1.00:2
chr1	33134653	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,6:31:187:0.032:2	./.	./.	./.
chr1	33134683	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,6:32:190:0.032:2	./.	./.	./.
chr1	33134915	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:31:177:0.023:2	./.	./.	./.
chr1	33135126	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,6:31:149:0.040:2	./.	./.	./.
chr1	33135128	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,6:30:152:0.039:2	./.	./.	./.
chr1	33160644	rs3795424	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,26:30:53:0.491:2
chr1	33160878	rs360042	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,51:32:52:0.981:2	0/1:0,34:32:34:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,72:32:72:1.00:2	0/1:2,91:32:93:0.978:2	0/1:1,83:32:84:0.988:2	0/1:0,79:33:79:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,63:33:63:1.00:2	0/1:0,69:33:69:1.00:2	0/1:43,32:33:75:0.427:2
chr1	33161212	rs360041	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,154:30:154:1.00:2	0/1:0,91:30:91:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,144:30:144:1.00:2	0/1:0,144:30:144:1.00:2	0/1:0,163:30:163:1.00:2	0/1:0,164:30:164:1.00:2	0/1:0,186:30:186:1.00:2	0/1:1,179:31:180:0.994:2	0/1:0,141:30:141:1.00:2	0/1:87,102:30:189:0.540:2
chr1	33161264	rs74519835	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,86:33:192:0.450:2
chr1	33231380	rs6694085	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:10,15:31:25:0.600:2	0/1:11,6:30:17:0.353:2	./.	0/1:20,9:29:29:0.310:2	./.	./.	./.	0/1:21,24:31:45:0.533:2	./.	0/1:10,28:30:38:0.737:2	./.
chr1	33231403	rs6702519	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:10,21:32:31:0.677:2	0/1:9,5:24:14:0.357:2	./.	0/1:21,10:31:31:0.323:2	./.	./.	./.	0/1:20,18:32:38:0.474:2	./.	0/1:15,25:32:40:0.625:2	./.
chr1	33235626	rs3737995	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,19:32:34:0.559:2	0/1:2,6:32:8:0.750:2	./.	0/1:14,17:32:31:0.548:2	0/1:0,42:32:42:1.00:2	./.	0/1:16,29:32:45:0.644:2	0/1:29,24:32:53:0.453:2	./.	0/1:21,13:32:34:0.382:2	0/1:2,6:29:8:0.750:2
chr1	33235651	rs12730560	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,8:27:23:0.348:2
chr1	33235789	rs41306613	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,29:29:60:0.483:2	./.	./.	./.	./.
chr1	33245802	rs699005	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:29:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:27,23:29:50:0.460:2
chr1	33282775	rs72654020	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,19:30:39:0.487:2
chr1	33292189	rs41265867	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,17:31:22:0.773:2	./.	./.
chr1	33354854	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,3:33:53:0.057:2
chr1	33366797	rs147041320	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,4:25:32:0.125:2	./.
chr1	33402515	rs35462688	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,36:29:84:0.429:2	./.	./.	./.	./.	./.
chr1	33402542	rs35756506	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,40:27:102:0.392:2	./.	./.	./.	./.	./.
chr1	33407947	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:32:124:0.032:2	./.	./.	./.	./.	./.
chr1	33409693	rs194645	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:50,33:30:83:0.398:2	0/1:35,17:30:52:0.327:2	./.	0/1:47,37:31:84:0.440:2	./.	./.	./.	0/1:76,31:30:107:0.290:2	./.	0/1:30,27:31:57:0.474:2	./.
chr1	33478848	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:32:103:0.039:2	./.	./.	./.	./.	./.
chr1	33502343	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,5:32:40:0.125:2	./.	./.	0/1:61,5:27:66:0.076:2	./.	./.	./.	0/1:74,4:33:78:0.051:2	./.	./.
chr1	33502357	rs199641857	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,7:32:43:0.163:2	./.	./.	0/1:63,10:32:74:0.137:2	./.	./.	./.	0/1:83,6:32:89:0.067:2	./.	0/1:64,4:32:68:0.059:2
chr1	33502376	rs76061645	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,11:31:48:0.229:2	./.	./.	0/1:91,22:32:113:0.195:2	./.	./.	./.	0/1:87,11:31:98:0.112:2	./.	0/1:65,11:32:76:0.145:2
chr1	33560210	rs140229682	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,40:31:87:0.460:2	./.	./.	./.	./.	./.	./.	./.
chr1	33583621	rs199536379	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,5:22:14:0.357:2	0/1:108,15:15:124:0.122:2	0/1:103,17:17:120:0.142:2	./.	0/1:110,21:15:131:0.160:2	0/1:107,11:15:118:0.093:2	0/1:93,12:13:105:0.114:2	0/1:79,11:20:90:0.122:2	./.
chr1	33625430	rs202226050	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,4:33:93:0.043:2	./.	./.	./.	./.	./.	./.
chr1	33631069	rs2306257	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,7:29:11:0.636:2	0/1:2,84:28:86:0.977:2	./.	./.	./.	0/1:46,42:29:88:0.477:2	./.	0/1:34,15:30:49:0.306:2	0/1:14,16:31:30:0.533:2
chr1	33646950	rs622407	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,9:30:9:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,2:32:2:1.00:2	./.	0/1:0,26:31:26:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,11:32:11:1.00:2	0/1:15,7:30:22:0.318:2	0/1:0,10:31:10:1.00:2	0/1:0,6:31:6:1.00:2	./.
chr1	33747327	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:141,4:32:145:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr1	33764617	rs55887741	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,13:32:26:0.500:2	./.
chr1	33772792	rs113218677	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,17:32:22:0.773:2	./.
chr1	33790496	rs11554674	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,18:32:47:0.383:2	0/1:16,9:32:25:0.360:2	0/1:9,7:32:16:0.438:2	0/1:32,36:31:68:0.529:2	./.	0/1:1,51:31:52:0.981:2	./.	0/1:1,81:32:82:0.988:2	./.	0/1:23,32:32:55:0.582:2	0/1:39,25:31:64:0.391:2
chr1	33794493	rs150064930	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,12:31:44:0.273:2	./.	./.	./.	./.	./.	./.	./.
chr1	33820033	rs16835408	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,29:32:65:0.446:2	0/1:23,16:31:39:0.410:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	33820134	rs12026290	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,21:32:38:0.553:2	0/1:14,16:32:30:0.533:2	0/1:3,3:31:6:0.500:2	0/1:40,23:32:63:0.365:2	./.	0/1:0,63:31:63:1.00:2	./.	0/1:2,87:31:89:0.978:2	./.	0/1:30,19:32:49:0.388:2	0/1:19,22:32:41:0.537:2
chr1	33832792	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:33:104:0.038:2	./.
chr1	33832865	rs6425816	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:30:74:1.00:2	0/1:0,46:30:46:1.00:2	0/1:15,8:31:23:0.348:2	0/1:1,103:31:104:0.990:2	./.	0/1:0,104:30:104:1.00:2	./.	0/1:0,119:31:119:1.00:2	./.	0/1:0,81:31:81:1.00:2	0/1:45,38:30:83:0.458:2
chr1	33832919	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,8:27:62:0.129:2	./.	./.	./.	./.	./.	./.
chr1	33832933	rs10914692	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,35:29:58:0.603:2	./.	./.	./.	./.	./.	./.	./.
chr1	33945192	rs16835507	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,32:31:77:0.416:2	./.	./.	0/1:51,42:32:93:0.452:2	./.	./.
chr1	33957130	rs3795419	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:13,17:32:30:0.567:2	0/1:9,15:32:24:0.625:2	./.	./.	0/1:26,22:31:48:0.458:2	./.	./.	./.	0/1:29,21:33:50:0.420:2	./.	0/1:25,32:32:57:0.561:2
chr1	33957152	rs4403594	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:33:43:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,65:32:65:1.00:2	0/1:1,60:32:61:0.984:2	./.	0/1:0,62:34:62:1.00:2	0/1:0,48:33:48:1.00:2	0/1:1,72:32:73:0.986:2
chr1	33958929	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:31:134:0.030:2	./.	./.	./.	./.
chr1	33960062	rs9943259	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,55:30:55:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,11:31:11:1.00:2	./.	0/1:39,28:31:67:0.418:2	0/1:53,36:29:89:0.404:2	0/1:30,40:30:70:0.571:2	0/1:0,88:30:88:1.00:2	0/1:0,89:30:89:1.00:2	0/1:0,84:30:84:1.00:2	0/1:65,34:30:99:0.343:2
chr1	33960133	rs201589778	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,17:32:50:0.340:2	0/1:14,16:32:30:0.533:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	34038214	rs2641962	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,44:28:77:0.571:2	0/1:19,13:28:32:0.406:2	0/1:3,5:27:8:0.625:2	0/1:39,49:29:88:0.557:2	./.	0/1:0,100:28:100:1.00:2	0/1:93,59:27:152:0.388:2	./.	0/1:67,52:31:119:0.437:2	0/1:0,71:27:71:1.00:2	0/1:0,60:28:60:1.00:2
chr1	34046403	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:32:167:0.024:2	./.	./.	./.	./.	./.
chr1	34070973	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,4:32:148:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr1	34071525	rs1874045	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,27:30:47:0.574:2	0/1:16,11:32:27:0.407:2	./.	0/1:0,37:30:37:1.00:2	0/1:28,5:30:33:0.152:2	0/1:0,48:31:48:1.00:2	0/1:17,12:29:29:0.414:2	0/1:24,17:31:41:0.415:2	0/1:1,45:31:46:0.978:2	./.	0/1:0,39:31:39:1.00:2
chr1	34090679	rs16835683	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:86,72:32:158:0.456:2	0/1:28,42:31:70:0.600:2	./.	./.	./.	./.	./.	0/1:89,98:32:187:0.524:2	./.	./.	./.
chr1	34166210	rs146082635	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,62:33:127:0.488:2	./.	./.	./.
chr1	34191002	rs35719666	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,55:31:130:0.423:2	./.	./.	./.	./.	./.
chr1	34238283	rs474474	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,12:27:48:0.250:2	0/1:19,22:29:41:0.537:2	./.	0/1:40,61:28:101:0.604:2	0/1:2,74:28:76:0.974:2	./.	./.	./.	./.	./.	./.
chr1	34270498	rs10737374	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,52:29:133:0.391:2	0/1:38,53:30:91:0.582:2	0/1:0,21:29:21:1.00:2	0/1:79,54:28:133:0.406:2	0/1:0,105:28:105:1.00:2	0/1:70,62:29:132:0.470:2	0/1:0,106:30:106:1.00:2	./.	0/1:0,118:30:118:1.00:2	0/1:77,53:29:130:0.408:2	0/1:72,72:30:145:0.500:2
chr1	34285342	rs17342512	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,49:32:102:0.480:2	0/1:32,30:32:62:0.484:2	0/1:0,17:32:17:1.00:2	0/1:83,54:31:137:0.394:2	0/1:0,188:31:188:1.00:2	0/1:99,56:32:155:0.361:2	0/1:2,173:32:175:0.989:2	./.	0/1:102,60:32:164:0.370:2	0/1:57,53:32:110:0.482:2	0/1:48,57:31:105:0.543:2
chr1	34285381	rs11578857	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,77:32:143:0.538:2	0/1:40,36:31:76:0.474:2	0/1:0,17:31:17:1.00:2	0/1:101,69:32:170:0.406:2	0/1:1,178:31:179:0.994:2	0/1:116,78:31:194:0.402:2	0/1:1,183:31:184:0.995:2	./.	0/1:113,74:32:187:0.396:2	0/1:66,64:31:130:0.492:2	0/1:50,55:31:105:0.524:2
chr1	34329897	rs911218	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:29:51:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,58:29:58:1.00:2	0/1:0,51:28:51:1.00:2	0/1:0,41:28:41:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,47:28:47:1.00:2	0/1:0,58:30:58:1.00:2	0/1:0,40:29:40:1.00:2	0/1:1,66:29:67:0.985:2
chr1	34330067	rs10379	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,22:31:46:0.478:2	0/1:14,9:32:23:0.391:2	0/1:0,3:29:3:1.00:2	0/1:18,28:31:46:0.609:2	0/1:1,33:31:34:0.971:2	0/1:23,18:29:41:0.439:2	0/1:0,24:31:24:1.00:2	./.	0/1:0,43:32:43:1.00:2	0/1:16,16:28:32:0.500:2	0/1:18,28:30:46:0.609:2
chr1	34383844	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:30:50:0.080:2	./.	./.	./.	./.	./.
chr1	34663180	rs3795412	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,29:31:65:0.446:2	./.	0/1:37,20:31:57:0.351:2	./.	./.	./.	./.	0/1:21,32:32:53:0.604:2
chr1	34663208	rs1382602	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,51:32:51:1.00:2	./.	0/1:0,53:32:53:1.00:2	0/1:34,25:32:59:0.424:2	./.	./.	0/1:30,28:33:58:0.483:2	0/1:19,26:32:45:0.578:2
chr1	34663411	rs1414474	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,53:32:101:0.525:2	./.	0/1:43,41:32:84:0.488:2	0/1:26,49:33:75:0.653:2	./.	./.	0/1:33,22:32:55:0.400:2	0/1:38,23:32:61:0.377:2
chr1	34667736	rs139397885	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,96:32:177:0.542:2	./.	./.
chr1	34667784	rs80015626	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,9:21:73:0.123:2	./.	0/1:12,4:21:16:0.250:2	0/1:116,20:15:136:0.147:2	0/1:117,33:15:150:0.220:2	0/1:114,27:19:141:0.191:2	0/1:118,27:15:145:0.186:2	0/1:117,22:17:139:0.158:2	0/1:131,19:15:150:0.127:2	0/1:94,18:17:112:0.161:2	0/1:81,21:20:102:0.206:2
chr1	34673845	rs114229205	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,47:30:91:0.516:2	./.	./.	./.	./.	./.
chr1	34677815	rs61741807	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,50:29:109:0.459:2	./.	./.	./.	./.	./.
chr1	35135270	rs76067517	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,33:32:94:0.351:2	./.	./.	./.	./.	./.
chr1	35222993	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:32:195:0.021:2	./.	./.
chr1	35223345	rs3738345	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,29:30:57:0.509:2	0/1:27,23:32:50:0.460:2	./.	./.	./.	0/1:52,52:32:104:0.500:2	./.	0/1:128,4:32:132:0.030:2	./.	./.	./.
chr1	35223881	rs1061349	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,13:29:35:0.371:2	0/1:11,15:30:28:0.577:2	./.	./.	./.	0/1:35,40:29:76:0.533:2	./.	./.	./.	./.	./.
chr1	35223913	rs28695349	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,30:29:65:0.462:2	./.	./.	./.	./.
chr1	35227162	rs9426009	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,50:29:99:0.505:2	./.	./.	./.	./.	./.	./.
chr1	35227207	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,40:31:76:0.526:2	./.
chr1	35227362	rs79193415	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,22:33:46:0.478:2	./.	./.	./.	0/1:22,26:33:48:0.542:2	./.	./.	./.
chr1	35227630	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,7:30:49:0.143:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	35227673	rs755931	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,41:31:86:0.477:2	./.	./.	./.	./.	./.	./.	./.
chr1	35228604	rs1985283	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:8,16:33:24:0.667:2	0/1:8,10:32:18:0.556:2	0/1:2,2:33:4:0.500:2	0/1:13,18:31:31:0.581:2	./.	0/1:20,15:31:35:0.429:2	./.	0/1:19,21:32:40:0.525:2	0/1:12,10:33:22:0.455:2	./.	./.
chr1	35228693	rs1123974	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,24:31:53:0.453:2	./.	./.	./.	./.	0/1:22,20:32:42:0.476:2	./.	./.
chr1	35228765	rs75361521	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,27:31:81:0.333:2	./.	0/1:70,44:31:114:0.386:2	./.	./.	./.
chr1	35229142	rs78592202	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,60:31:153:0.392:2	./.	0/1:96,77:31:174:0.445:2	./.	./.	./.
chr1	35229259	rs7549597	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,28:31:56:0.500:2	0/1:17,21:31:38:0.553:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	35251075	rs200004121	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,7:17:51:0.137:2
chr1	35251161	rs35983826	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,31:31:76:0.408:2	./.	./.	./.	./.	./.
chr1	35251219	rs41266429	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,33:32:73:0.452:2	0/1:27,20:32:47:0.426:2	0/1:4,3:32:7:0.429:2	0/1:42,35:31:77:0.455:2	0/1:42,33:31:75:0.440:2	./.	./.	./.	./.	./.	./.
chr1	35251229	rs476220	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,29:33:70:0.414:2	0/1:27,16:33:43:0.372:2	0/1:0,10:32:10:1.00:2	0/1:41,34:32:75:0.453:2	0/1:0,75:32:75:1.00:2	0/1:53,48:32:101:0.475:2	0/1:46,54:32:100:0.540:2	./.	0/1:59,43:32:102:0.422:2	./.	./.
chr1	35251545	rs2236214	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,24:32:49:0.490:2	./.	0/1:17,20:30:37:0.541:2	./.	./.	./.	0/1:22,23:32:45:0.511:2	./.
chr1	35251669	rs13774	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,11:32:27:0.407:2	0/1:14,7:32:21:0.333:2	0/1:2,4:29:6:0.667:2	0/1:23,15:31:38:0.395:2	0/1:16,16:32:32:0.500:2	./.	./.	./.	./.	./.	./.
chr1	35251735	rs9118	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,34:33:69:0.493:2	./.	0/1:17,12:32:29:0.414:2	./.	./.	./.	0/1:16,17:32:33:0.515:2	./.
chr1	35259946	rs1764389	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,12:30:27:0.444:2	./.	0/1:86,90:29:176:0.511:2	./.	0/1:108,90:30:198:0.455:2	./.	0/1:80,79:31:159:0.497:2	0/1:57,89:30:147:0.610:2	./.
chr1	35259961	rs1764390	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,42:33:86:0.488:2	0/1:40,23:31:63:0.365:2	0/1:0,22:31:22:1.00:2	0/1:1,134:32:135:0.993:2	0/1:0,182:32:182:1.00:2	0/1:0,147:31:147:1.00:2	0/1:105,88:32:193:0.456:2	./.	0/1:78,69:33:147:0.469:2	0/1:53,81:32:134:0.604:2	./.
chr1	35260202	rs41266431	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,5:30:13:0.417:2	0/1:6,6:31:12:0.500:2	./.	0/1:9,4:31:13:0.308:2	0/1:7,10:31:17:0.588:2	./.	./.	./.	./.	./.	./.
chr1	35260769	rs1764391	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,12:27:19:0.632:2	0/1:12,8:30:20:0.400:2	0/1:13,8:29:21:0.381:2	./.	0/1:9,8:31:18:0.471:2	0/1:13,7:27:20:0.350:2	./.
chr1	35260929	rs3543	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,44:32:89:0.494:2	0/1:23,28:30:51:0.549:2	0/1:0,8:32:8:1.00:2	0/1:0,85:31:85:1.00:2	0/1:3,97:31:100:0.970:2	0/1:0,89:31:89:1.00:2	0/1:75,62:31:137:0.453:2	./.	0/1:69,59:33:128:0.461:2	0/1:39,38:32:77:0.494:2	./.
chr1	35261166	rs697372	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,31:31:102:0.304:2	./.	0/1:67,47:31:114:0.412:2	./.	0/1:35,46:32:81:0.568:2	0/1:36,34:32:70:0.486:2	./.
chr1	35261232	rs705193	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,36:32:69:0.522:2	0/1:34,21:32:55:0.382:2	0/1:7,7:32:14:0.500:2	0/1:1,89:33:90:0.989:2	0/1:37,53:32:90:0.589:2	0/1:46,39:32:85:0.459:2	./.	0/1:130,4:33:134:0.030:2	./.	./.	./.
chr1	35454115	rs61745582	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,46:31:102:0.451:2	./.	./.	./.	./.	./.
chr1	35478138	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:32:59:0.068:2	./.	./.	./.
chr1	35562965	rs2971408	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:31:59:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,84:31:84:1.00:2	0/1:41,30:32:71:0.423:2	0/1:42,40:31:82:0.488:2	0/1:0,53:32:53:1.00:2	0/1:2,67:32:69:0.971:2	0/1:0,71:32:71:1.00:2	0/1:0,56:32:56:1.00:2	0/1:1,86:32:87:0.989:2
chr1	35658492	rs76077726	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,10:29:19:0.526:2	./.	./.	./.	./.	./.
chr1	35658546	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,5:33:9:0.556:2	./.	./.	./.	./.	./.
chr1	35857938	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:30:66:0.061:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	35864571	rs12040345	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,45:32:99:0.455:2	./.	./.	./.	./.	./.
chr1	35900615	rs3814302	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,61:29:136:0.452:2	0/1:42,44:29:86:0.512:2	./.	./.	./.	0/1:80,75:29:155:0.484:2	./.	0/1:191,5:28:197:0.026:2	./.	./.	./.
chr1	35909782	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,4:32:83:0.048:2	./.	./.	./.	./.	./.	./.
chr1	35928299	rs190551485	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:31:10:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	36020029	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:32:43:0.093:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	36023810	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:32:90:0.044:2	./.	./.	./.	./.	./.
chr1	36031117	rs55743884	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,7:32:13:0.538:2
chr1	36202585	rs35490896	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,38:30:82:0.463:2	0/1:40,32:30:72:0.444:2	./.	./.	./.	./.	./.
chr1	36203016	rs55647365	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,7:32:26:0.269:2	./.	./.	./.
chr1	36209093	rs200963718	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:33:145:0.028:2	./.	./.	./.
chr1	36215330	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:31:162:0.025:2	./.	./.	./.
chr1	36225948	rs7537203	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:37,36:33:73:0.493:2	0/1:27,32:32:59:0.542:2	./.	./.	0/1:35,21:32:56:0.375:2	0/1:0,63:33:63:1.00:2	./.	./.	./.	./.	./.
chr1	36235455	rs61751002	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,11:30:17:0.647:2	./.	./.	./.	./.	./.
chr1	36316571	rs4652895	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,38:29:101:0.376:2	0/1:29,26:29:55:0.473:2	0/1:0,10:31:10:1.00:2	0/1:1,96:30:97:0.990:2	0/1:90,65:28:155:0.419:2	./.	0/1:1,138:29:139:0.993:2	0/1:1,128:29:129:0.992:2	0/1:0,124:30:124:1.00:2	0/1:0,86:30:86:1.00:2	0/1:2,117:29:119:0.983:2
chr1	36380971	rs72661618	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,22:12:137:0.161:2	0/1:124,21:10:145:0.145:2	0/1:115,21:13:136:0.154:2	0/1:130,18:11:148:0.122:2	0/1:112,21:14:133:0.158:2	0/1:114,15:13:130:0.116:2	./.	0/1:83,11:17:95:0.117:2
chr1	36381038	rs148568098	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,64:30:148:0.432:2	./.	./.	./.	./.	./.	./.	./.
chr1	36474538	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,14:32:69:0.203:2	./.	./.	./.	./.	./.	./.
chr1	36521341	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:34:73:0.055:2	./.
chr1	36550658	rs12043423	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,53:32:105:0.505:2	./.	./.	./.	./.	./.
chr1	36552447	rs35654839	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,49:31:83:0.590:2	./.	./.	./.	./.	./.
chr1	36553673	rs399393	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,57:29:126:0.452:2	0/1:28,20:29:48:0.417:2	0/1:0,16:30:16:1.00:2	0/1:0,141:29:141:1.00:2	0/1:118,74:29:192:0.385:2	0/1:0,133:29:133:1.00:2	0/1:3,176:29:179:0.983:2	0/1:2,164:29:166:0.988:2	0/1:0,123:30:123:1.00:2	0/1:0,97:29:98:1.00:2	0/1:65,30:28:95:0.316:2
chr1	36556867	rs768000	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,13:30:31:0.419:2	./.	./.	./.	./.	./.
chr1	36563524	rs35841184	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,26:32:52:0.500:2	./.	./.	./.	./.	./.	./.
chr1	36563959	rs182708720	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,13:29:38:0.342:2	./.	./.	./.	./.	./.
chr1	36565837	rs115156902	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	36603770	rs114981457	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,24:32:44:0.545:2	./.	./.	./.	./.	./.
chr1	36642420	rs475591	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:27:2:1.00:2	0/1:0,11:27:11:1.00:2	./.	0/1:3,7:29:10:0.700:2	./.	0/1:0,4:23:4:1.00:2	0/1:0,3:30:3:1.00:2	./.	./.
chr1	36643685	rs12563354	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,36:31:67:0.537:2	./.	./.	./.	./.	./.
chr1	36643783	rs12563364	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,7:29:8:0.875:2	./.	./.	./.	./.	./.
chr1	36644557	rs111556626	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,108:32:188:0.574:2	./.	./.	./.	./.	./.
chr1	36645811	rs41267273	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:83,49:30:132:0.371:2	0/1:30,26:29:56:0.464:2	./.	./.	0/1:58,42:29:100:0.420:2	./.	./.	./.	./.	0/1:66,67:29:133:0.504:2	./.
chr1	36752152	rs2242428	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,32:30:61:0.525:2	./.	0/1:52,43:30:95:0.453:2	0/1:55,21:31:76:0.276:2	0/1:53,28:31:81:0.346:2	0/1:48,52:32:100:0.520:2	./.	./.
chr1	36752433	rs6425977	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:30:67:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,67:31:67:1.00:2	./.	0/1:0,96:30:96:1.00:2	0/1:0,69:31:69:1.00:2	0/1:43,63:31:106:0.594:2	0/1:1,98:32:99:0.990:2	./.	0/1:58,30:29:88:0.341:2
chr1	36773405	rs35343437	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:30:95:1.00:2	0/1:2,51:29:53:0.962:2	0/1:9,5:28:14:0.357:2	0/1:99,61:30:160:0.381:2	./.	./.	0/1:62,50:30:112:0.446:2	./.	0/1:73,53:31:126:0.421:2	./.	0/1:68,40:28:108:0.370:2
chr1	36773761	rs76695875	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,15:31:25:0.600:2	0/1:13,13:28:26:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	36807481	rs3795498	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,59:28:104:0.584:2	0/1:27,39:29:66:0.591:2	0/1:7,7:30:14:0.500:2	0/1:53,63:28:116:0.543:2	./.	./.	0/1:78,65:27:143:0.455:2	./.	0/1:50,65:29:115:0.565:2	./.	0/1:53,34:28:87:0.391:2
chr1	36820927	rs11263875	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,183:31:189:0.968:2	./.	./.	0/1:104,90:32:195:0.464:2	./.	0/1:79,82:32:162:0.509:2	0/1:89,58:32:147:0.395:2
chr1	36886117	rs2275477	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,64:32:65:0.985:2	0/1:0,35:33:35:1.00:2	./.	0/1:35,23:32:58:0.397:2	./.	./.	./.	0/1:26,34:32:60:0.567:2	./.	./.	./.
chr1	36887813	rs17442970	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,17:32:30:0.567:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	36888462	rs1416840	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,57:31:121:0.471:2	./.	./.	./.	./.	0/1:81,62:31:143:0.434:2
chr1	36889005	rs16822954	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,28:31:58:0.483:2
chr1	36893968	rs61308377	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,18:33:46:0.391:2
chr1	36898067	rs34409118	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:2,99:33:101:0.980:2	0/1:2,63:32:65:0.969:2	./.	0/1:74,51:32:125:0.408:2	./.	./.	./.	0/1:107,72:32:179:0.402:2	./.	./.	./.
chr1	36927733	rs7065	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,132:33:133:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,153:32:153:1.00:2	0/1:0,131:32:131:1.00:2	0/1:0,160:32:160:1.00:2	0/1:0,159:32:159:1.00:2	0/1:0,167:32:167:1.00:2	0/1:0,151:33:152:1.00:2	0/1:0,167:33:167:1.00:2	0/1:0,171:33:172:1.00:2
chr1	36937059	rs3917981	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,26:32:26:1.00:2	0/1:0,15:30:15:1.00:2	./.	0/1:22,28:31:50:0.560:2	0/1:0,36:32:36:1.00:2	./.	0/1:0,21:32:21:1.00:2	0/1:2,27:32:29:0.931:2	0/1:23,19:33:42:0.452:2	0/1:0,18:31:18:1.00:2	0/1:13,16:32:29:0.552:2
chr1	36937065	rs3917980	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:19,11:33:30:0.367:2	0/1:6,11:33:17:0.647:2	./.	./.	0/1:24,22:33:46:0.478:2	./.	0/1:1,24:32:25:0.960:2	0/1:21,11:33:32:0.344:2	0/1:25,18:34:43:0.419:2	0/1:0,20:30:20:1.00:2	0/1:16,19:30:35:0.543:2
chr1	36938235	rs3918017	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,45:31:76:0.592:2	0/1:25,30:31:55:0.545:2	./.	0/1:38,62:31:100:0.620:2	0/1:47,57:31:104:0.548:2	./.	./.	./.	./.	./.	./.
chr1	36939484	rs201313973	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:116,10:17:126:0.079:2	./.	./.	0/1:112,10:16:123:0.082:2	./.	0/1:125,11:18:136:0.081:2	./.	./.	./.	0/1:110,13:14:123:0.106:2	./.
chr1	37285454	rs199790296	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,9:17:85:0.107:2	./.	./.	./.	./.	./.	./.	0/1:57,7:20:64:0.109:2
chr1	37319270	.	C	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:41,9:28:50:0.180:2	./.	./.	0/1:58,12:28:70:0.171:2	0/1:37,11:28:48:0.229:2	0/1:49,14:27:63:0.222:2	0/1:46,14:28:60:0.233:2	0/1:71,14:29:85:0.165:2	0/1:44,5:30:49:0.102:2	0/1:39,12:29:51:0.235:2	0/1:39,12:29:51:0.235:2
chr1	37325477	rs6691840	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,21:31:49:0.429:2	0/1:19,11:32:30:0.367:2	./.	./.	./.	0/1:34,19:32:53:0.358:2	0/1:40,22:32:62:0.355:2	0/1:41,26:32:67:0.388:2	0/1:36,24:33:60:0.400:2	./.	./.
chr1	37948912	rs41267299	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,4:32:12:0.333:2	0/1:53,37:31:90:0.411:2	./.	./.	./.	0/1:54,51:32:105:0.486:2	0/1:40,38:33:78:0.487:2	./.	./.
chr1	38006200	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,54:30:121:0.446:2	./.	./.	./.	./.	./.
chr1	38019747	rs2273013	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,7:32:19:0.368:2	0/1:6,12:32:18:0.667:2	0/1:2,2:33:5:0.500:2	0/1:12,11:26:23:0.478:2	./.	./.	./.	./.	0/1:3,19:30:22:0.864:2	./.	./.
chr1	38023316	rs11749	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:27,13:30:40:0.325:2	0/1:22,10:31:32:0.313:2	./.	./.	0/1:0,31:29:31:1.00:2	./.	0/1:29,19:31:48:0.396:2	0/1:0,39:29:39:1.00:2	./.	./.	0/1:32,15:29:47:0.319:2
chr1	38027737	rs138550216	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,32:29:68:0.471:2	./.	./.	./.	./.	./.
chr1	38030609	rs41267315	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,36:31:78:0.462:2	./.
chr1	38033291	rs34593152	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,65:31:123:0.528:2	0/1:43,29:32:72:0.403:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	38079517	rs36043533	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	38148765	rs684260	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,57:32:118:0.483:2	0/1:44,41:33:85:0.482:2	0/1:0,33:33:33:1.00:2	0/1:3,161:32:164:0.982:2	0/1:75,49:32:124:0.395:2	0/1:92,71:32:164:0.436:2	0/1:67,53:32:120:0.442:2	0/1:0,130:32:132:1.00:2	0/1:120,74:32:196:0.381:2	0/1:84,58:33:142:0.408:2	0/1:0,161:32:161:1.00:2
chr1	38149076	rs34250208	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:37,17:32:54:0.315:2	0/1:25,19:32:44:0.432:2	0/1:2,5:31:7:0.714:2	./.	0/1:24,23:32:47:0.489:2	./.	./.	0/1:58,58:31:117:0.500:2	./.	./.	./.
chr1	38152122	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,3:33:54:0.056:2	./.
chr1	38184470	rs610213	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:54,42:29:96:0.438:2	0/1:34,24:29:58:0.414:2	./.	./.	0/1:70,40:29:110:0.364:2	./.	./.	0/1:79,42:29:121:0.347:2	./.	./.	./.
chr1	38185647	rs2170809	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,81:31:171:0.474:2	./.	0/1:95,78:31:173:0.451:2	./.	./.	./.	0/1:90,61:31:151:0.404:2	0/1:88,65:31:154:0.425:2
chr1	38185723	rs6670599	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,51:31:92:0.554:2	./.	0/1:37,51:32:88:0.580:2	./.	./.	./.	0/1:50,39:32:89:0.438:2	0/1:41,44:32:85:0.518:2
chr1	38186189	rs6671088	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:83,45:32:128:0.352:2	0/1:33,44:31:77:0.571:2	0/1:22,8:30:30:0.267:2	./.	0/1:89,53:31:142:0.373:2	./.	./.	0/1:74,76:32:150:0.507:2	./.	./.	./.
chr1	38186206	rs12726343	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,57:30:121:0.471:2	./.	0/1:83,49:31:132:0.371:2	./.	./.	./.	0/1:66,57:30:123:0.463:2	0/1:56,64:31:120:0.533:2
chr1	38187447	rs579908	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,44:31:100:0.440:2	0/1:35,19:32:54:0.352:2	0/1:2,4:32:6:0.667:2	0/1:65,53:31:118:0.449:2	0/1:46,34:31:80:0.425:2	0/1:55,77:32:132:0.583:2	./.	0/1:43,34:32:77:0.442:2	./.	0/1:42,30:32:72:0.417:2	0/1:33,31:31:64:0.484:2
chr1	38187453	rs33970734	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,48:31:113:0.425:2	./.	0/1:55,74:31:129:0.574:2	./.	./.	./.	0/1:35,30:32:65:0.462:2	0/1:30,30:31:60:0.500:2
chr1	38188740	rs12405650	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,22:31:85:0.259:2	./.	0/1:58,26:30:84:0.310:2	./.	./.	./.	0/1:33,16:32:50:0.327:2	0/1:39,15:32:54:0.278:2
chr1	38188768	rs17464871	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,25:30:77:0.325:2	./.	0/1:47,29:30:76:0.382:2	./.	./.	./.	0/1:44,27:31:71:0.380:2	0/1:45,20:30:65:0.308:2
chr1	38188787	rs17511304	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,23:30:72:0.319:2	./.	0/1:40,28:31:68:0.412:2	./.	./.	./.	0/1:46,27:30:73:0.370:2	0/1:51,23:28:74:0.311:2
chr1	38262417	rs75705909	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,14:12:95:0.147:2	./.	./.	./.	./.	./.
chr1	38265764	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,7:17:36:0.194:2	./.	./.	./.
chr1	38265782	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:31:46:0.087:2	./.	./.	./.
chr1	38287835	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,91:33:195:0.467:2	0/1:80,82:32:162:0.506:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	38289383	rs12751325	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:55,45:31:100:0.450:2	0/1:29,29:30:58:0.500:2	./.	./.	0/1:81,47:30:128:0.367:2	./.	0/1:58,41:30:99:0.414:2	0/1:46,45:30:91:0.495:2	0/1:1,121:31:122:0.992:2	0/1:0,102:30:102:1.00:2	./.
chr1	38329999	rs41311191	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	0/1:17,12:32:29:0.414:2	./.	./.	./.	./.	./.	0/1:31,34:34:65:0.523:2
chr1	38338795	rs11488569	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,33:31:62:0.532:2	0/1:23,15:30:38:0.395:2	0/1:7,11:30:18:0.611:2	0/1:49,34:29:83:0.410:2	0/1:0,56:30:56:1.00:2	./.	0/1:22,26:30:48:0.542:2	0/1:45,49:30:94:0.521:2	0/1:1,80:31:81:0.988:2	0/1:0,56:31:56:1.00:2	0/1:54,52:31:106:0.491:2
chr1	38348506	rs41307896	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,9:31:24:0.375:2	./.	0/1:98,63:30:161:0.391:2	./.	./.	./.	./.	./.	0/1:108,84:31:192:0.438:2
chr1	38353941	rs28580141	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,25:29:64:0.391:2
chr1	38397341	rs34655914	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,6:29:6:1.00:2	./.	./.	./.	0/1:0,5:33:5:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,3:32:3:1.00:2
chr1	38397369	rs35267671	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,10:28:11:0.909:2	./.	./.	./.	0/1:0,8:32:8:1.00:2	0/1:1,3:30:4:0.750:2	0/1:0,3:33:3:1.00:2
chr1	38411445	rs871524	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,33:32:53:0.623:2	0/1:30,37:31:67:0.552:2	./.
chr1	38423853	rs9293	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:33:85:1.00:2	0/1:0,53:33:53:1.00:2	0/1:3,9:33:12:0.750:2	0/1:0,99:33:100:1.00:2	0/1:32,31:32:63:0.492:2	0/1:0,80:32:80:1.00:2	0/1:0,75:33:75:1.00:2	0/1:0,89:32:91:1.00:2	0/1:0,90:33:90:1.00:2	0/1:0,63:33:63:1.00:2	0/1:49,44:33:93:0.473:2
chr1	38433799	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.
chr1	38442547	rs10890216	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,74:32:74:1.00:2	0/1:0,38:32:38:1.00:2	./.	0/1:0,68:31:68:1.00:2	0/1:42,29:31:71:0.408:2	0/1:0,86:30:86:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,42:31:42:1.00:2	0/1:62,39:32:101:0.386:2
chr1	38444658	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,6:18:43:0.140:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	38446319	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:167,4:32:171:0.023:2	./.	./.	./.	./.	./.	0/1:186,6:30:192:0.031:2
chr1	38449910	rs11210870	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:33:44:1.00:2	0/1:2,35:33:37:0.946:2	0/1:8,9:32:17:0.529:2	0/1:52,4:32:56:0.071:2	./.	0/1:1,75:33:76:0.987:2	0/1:0,71:33:71:1.00:2	0/1:46,41:32:87:0.471:2	./.	0/1:34,28:33:62:0.452:2	0/1:33,30:33:63:0.476:2
chr1	38450367	rs6680796	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,107:29:107:1.00:2	0/1:0,64:30:64:1.00:2	0/1:5,3:31:8:0.375:2	0/1:0,90:30:90:1.00:2	0/1:45,30:29:75:0.400:2	0/1:0,89:29:89:1.00:2	0/1:0,93:30:93:1.00:2	0/1:0,105:30:105:1.00:2	0/1:0,111:30:111:1.00:2	0/1:1,88:30:90:0.989:2	0/1:70,33:30:103:0.320:2
chr1	38463504	rs7366048	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:31:61:1.00:2	0/1:0,37:31:37:1.00:2	0/1:4,8:30:12:0.667:2	0/1:0,80:31:81:1.00:2	./.	0/1:0,105:31:105:1.00:2	0/1:1,111:31:113:0.991:2	0/1:45,41:31:86:0.477:2	./.	0/1:36,39:32:75:0.520:2	0/1:45,33:31:78:0.423:2
chr1	38463692	rs369640388	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:32:186:0.022:2	./.
chr1	38464690	rs142528167	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:42,41:31:83:0.494:2	0/1:18,18:32:36:0.500:2	./.	./.	./.	./.	0/1:72,74:31:147:0.507:2	./.	./.	./.	./.
chr1	39311617	rs11549874	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:61,68:29:129:0.527:2	0/1:53,44:29:97:0.454:2	./.	0/1:67,68:29:135:0.504:2	./.	./.	./.	0/1:45,64:28:109:0.587:2	./.	./.	./.
chr1	39317396	rs147181818	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,49:30:126:0.389:2	./.	./.	./.	./.	./.	./.	./.
chr1	39330330	rs74064928	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,50:31:109:0.459:2	./.	./.	./.	./.	./.
chr1	39330399	rs3828041	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.	0/1:31,21:31:52:0.404:2	./.	./.	./.	./.	./.	0/1:0,84:31:84:1.00:2
chr1	39340282	rs880303	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,23:32:65:0.354:2	0/1:24,17:32:41:0.415:2	./.	0/1:41,29:31:70:0.414:2	0/1:21,27:31:48:0.563:2	./.	0/1:21,28:32:49:0.571:2	./.	./.	0/1:31,40:31:71:0.563:2	./.
chr1	39340419	rs61744044	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,89:30:194:0.459:2	./.	./.	./.	./.	./.
chr1	39340504	rs41270783	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,91:31:178:0.511:2	./.	./.	./.	0/1:83,63:30:146:0.432:2	./.	./.	./.
chr1	39340558	rs75632250	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,47:31:106:0.443:2	./.	./.	./.	./.	./.	./.
chr1	39340607	rs16825625	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,40:33:103:0.388:2	0/1:63,62:33:125:0.496:2	./.	./.	./.
chr1	39340782	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:33:88:0.045:2	./.
chr1	39340862	rs874243	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:91,68:33:159:0.428:2	0/1:41,43:32:84:0.512:2	0/1:7,3:31:10:0.300:2	./.	0/1:72,54:33:126:0.429:2	./.	./.	./.	./.	./.	0/1:1,178:33:179:0.994:2
chr1	39352271	rs2147914	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,20:32:54:0.370:2	0/1:11,10:31:21:0.476:2	./.	0/1:29,20:31:49:0.408:2	0/1:36,22:31:58:0.379:2	./.	0/1:45,39:32:84:0.464:2	./.	./.	0/1:17,22:32:39:0.564:2	./.
chr1	39748921	rs2275188	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,26:33:49:0.531:2	0/1:0,38:31:38:1.00:2	./.	./.	0/1:1,60:32:61:0.984:2	0/1:0,65:34:65:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,76:32:76:1.00:2
chr1	39776505	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	39797055	rs16826069	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,24:29:72:0.333:2	./.	0/1:52,31:29:83:0.373:2	./.	./.	./.	./.	./.
chr1	39797300	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,13:32:47:0.277:2	./.	./.
chr1	39798946	rs41270805	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,39:30:93:0.419:2	0/1:15,20:29:35:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	39799679	rs16826077	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,31:32:59:0.525:2	0/1:24,28:31:52:0.538:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	39799860	rs139218331	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,19:33:48:0.396:2	./.
chr1	39799891	rs150706108	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,23:32:47:0.489:2	./.	./.	./.	./.	./.
chr1	39799912	rs75770915	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:32,19:30:51:0.373:2	0/1:21,12:32:33:0.364:2	./.	./.	./.	./.	0/1:0,20:32:20:1.00:2	./.	./.	./.	./.
chr1	39800639	rs147062334	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,15:30:56:0.268:2	./.	./.	./.	./.	./.
chr1	39801815	rs41270807	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,17:32:44:0.386:2	./.	0/1:34,27:32:61:0.443:2	./.	./.	./.	./.	./.
chr1	39806610	rs3116396	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,33:32:33:1.00:2	0/1:0,19:32:19:1.00:2	./.	0/1:0,22:32:22:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,38:31:38:1.00:2
chr1	39812822	rs2761764	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,101:32:101:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,127:33:127:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,122:32:122:1.00:2	0/1:1,103:32:104:0.990:2	0/1:0,134:32:134:1.00:2	0/1:0,120:33:120:1.00:2	0/1:0,115:33:115:1.00:2	0/1:0,146:32:146:1.00:2
chr1	39818764	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:31:103:0.039:2	./.	./.	./.	./.
chr1	39824896	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:142,4:31:146:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr1	39835817	rs2296172	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,10:33:20:0.500:2	./.	0/1:4,12:30:16:0.750:2	./.	./.	./.	./.	./.
chr1	39838174	rs80197726	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:41,29:33:71:0.414:2	0/1:17,22:32:39:0.564:2	./.	./.	./.	./.	0/1:2,36:33:38:0.947:2	./.	./.	./.	./.
chr1	39838268	rs146021397	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,17:28:37:0.459:2	./.	./.	./.	./.	./.
chr1	39852895	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:33:58:0.069:2	./.	./.
chr1	39853163	rs79901102	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,3:32:16:0.188:2	./.	./.	./.	./.	./.
chr1	39853341	rs146321347	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,23:32:55:0.418:2	./.	./.	./.	./.	./.
chr1	39853365	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:30:69:0.058:2	./.	./.	./.	./.	./.
chr1	39853973	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:141,4:31:145:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr1	39878815	rs1746842	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:32,29:32:61:0.475:2	0/1:13,16:32:29:0.552:2	./.	./.	./.	./.	0/1:3,89:32:92:0.967:2	./.	./.	./.	./.
chr1	39879366	rs604316	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,11:32:11:1.00:2	0/1:0,7:28:7:1.00:2	./.	0/1:12,8:28:20:0.400:2	./.	0/1:0,17:27:17:1.00:2	0/1:3,11:30:14:0.786:2	./.	./.	./.	./.
chr1	39879412	rs55976345	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,22:29:38:0.579:2
chr1	39880274	rs783823	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:22,22:32:44:0.500:2	0/1:17,7:32:24:0.292:2	./.	./.	./.	./.	0/1:0,28:32:28:1.00:2	./.	./.	./.	./.
chr1	39880319	rs3768302	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,18:32:35:0.514:2	./.	0/1:20,23:32:43:0.535:2	./.	./.	./.	./.	./.
chr1	39880765	rs783824	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:19,17:32:36:0.472:2	0/1:19,13:32:32:0.406:2	./.	./.	./.	./.	0/1:3,36:32:39:0.923:2	./.	./.	./.	./.
chr1	39881040	rs1180375	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:34:18:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,2:35:2:1.00:2	0/1:13,8:32:21:0.381:2	./.	0/1:10,13:33:23:0.565:2	0/1:1,21:32:22:0.955:2	./.	./.	./.	./.
chr1	39881415	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:30:117:0.034:2	./.	./.	./.	./.	./.
chr1	39881468	rs17343193	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,88:30:187:0.471:2	./.	0/1:72,65:30:137:0.474:2	./.	./.	./.	./.	./.
chr1	39896475	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:31:139:0.029:2	./.
chr1	39898828	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:33:145:0.028:2	./.	./.	./.
chr1	39900230	rs138450442	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:32:167:0.024:2	./.	./.	./.	./.
chr1	39908506	rs587404	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,60:31:61:0.984:2	0/1:0,42:32:42:1.00:2	./.	0/1:54,35:31:89:0.393:2	./.	0/1:34,38:31:73:0.528:2	0/1:1,85:30:86:0.988:2	./.	./.	./.	./.
chr1	39914363	rs668556	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:32:32:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,12:33:12:1.00:2	0/1:28,24:34:52:0.462:2	0/1:0,45:32:45:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,29:33:29:1.00:2	./.	./.	0/1:14,18:33:32:0.563:2	0/1:32,32:32:64:0.500:2
chr1	39917888	rs1746838	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:18,32:33:50:0.640:2	0/1:7,17:32:24:0.708:2	./.	./.	./.	./.	0/1:2,52:32:54:0.963:2	./.	./.	./.	./.
chr1	39945661	rs202091916	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,12:15:73:0.164:2
chr1	39976865	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:106,86:29:192:0.448:2	./.	./.	./.	./.	./.	./.	0/1:137,57:30:194:0.294:2
chr1	39976930	rs201515760	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,33:30:192:0.172:2	./.	./.	./.	./.
chr1	39976974	rs202230393	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,25:29:197:0.127:2	./.	./.	./.	./.
chr1	39976997	rs201346829	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,36:32:188:0.191:2	0/1:132,38:31:170:0.224:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	39977575	rs200415763	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,125:32:169:0.740:2	0/1:26,92:32:118:0.780:2	0/1:32,10:31:42:0.238:2	0/1:0,165:31:165:1.00:2	0/1:87,68:32:155:0.439:2	0/1:91,62:31:153:0.405:2	0/1:83,69:32:152:0.454:2	0/1:90,70:32:160:0.438:2	0/1:0,181:32:181:1.00:2	0/1:0,164:32:164:1.00:2	0/1:0,175:32:175:1.00:2
chr1	39987183	rs139271312	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,62:31:169:0.367:2	./.	./.	./.	./.	./.
chr1	39987190	rs115627781	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:78,8:31:86:0.093:2	0/1:70,12:31:82:0.146:2	./.	./.	./.	./.	0/1:0,7:28:7:1.00:2	./.	./.	0/1:0,4:24:4:1.00:2	0/1:0,4:30:4:1.00:2
chr1	39987201	rs144103941	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:32:120:0.033:2	0/1:8,3:32:11:0.273:2	./.
chr1	39988084	rs6525	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,13:31:82:0.159:2	./.	./.	0/1:1,43:30:44:0.977:2	0/1:0,43:32:43:1.00:2	0/1:0,17:31:17:1.00:2	0/1:132,14:31:146:0.096:2
chr1	39988145	rs6524	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:89,5:29:94:0.053:2	./.	./.	0/1:62,92:28:154:0.597:2	./.	0/1:91,73:29:164:0.445:2	./.	0/1:121,12:26:133:0.090:2	0/1:107,36:31:143:0.252:2	0/1:59,10:32:69:0.145:2	0/1:90,37:30:127:0.291:2
chr1	39988708	rs2889739	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,61:29:106:0.575:2	0/1:58,62:29:120:0.517:2	./.	./.	./.	./.	./.
chr1	40027464	rs12755743	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,22:31:73:0.301:2
chr1	40030823	rs12127094	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:27,23:32:50:0.460:2	0/1:16,8:31:24:0.333:2	./.	./.	0/1:30,13:31:43:0.302:2	0/1:37,26:29:63:0.413:2	./.	./.	./.	./.	./.
chr1	40036944	rs61743745	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:57,53:32:110:0.482:2	0/1:34,37:31:71:0.521:2	./.	./.	./.	./.	0/1:96,72:31:168:0.429:2	./.	./.	./.	./.
chr1	40041482	rs201860976	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:42,6:24:48:0.125:2	./.	./.	./.	0/1:60,9:20:69:0.130:2	./.	0/1:57,12:20:69:0.174:2	0/1:67,11:18:78:0.141:2	0/1:39,5:23:44:0.114:2	./.	0/1:32,7:21:39:0.179:2
chr1	40092227	rs139544750	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,20:28:54:0.370:2	./.	./.	./.	./.	./.	./.
chr1	40098328	rs784625	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:29:63:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,97:30:97:1.00:2	0/1:0,72:30:72:1.00:2	0/1:0,116:30:116:1.00:2	0/1:0,127:30:127:1.00:2	0/1:0,128:30:128:1.00:2	0/1:1,93:30:95:0.989:2	0/1:1,72:29:73:0.986:2	0/1:0,114:29:114:1.00:2
chr1	40148382	rs76877577	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,79:32:154:0.513:2	./.	./.	./.
chr1	40149642	rs784634	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,26:32:46:0.565:2	0/1:16,16:31:32:0.500:2	0/1:0,12:31:12:1.00:2	0/1:0,49:30:50:1.00:2	0/1:0,40:30:40:1.00:2	0/1:0,46:28:46:1.00:2	0/1:33,28:31:61:0.459:2	0/1:0,68:30:68:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,37:30:37:1.00:2
chr1	40150156	rs9662128	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,92:32:93:0.989:2	0/1:44,38:31:82:0.463:2	0/1:73,56:31:129:0.434:2	0/1:65,50:32:115:0.435:2	0/1:0,84:32:84:1.00:2	0/1:0,83:31:83:1.00:2	./.
chr1	40226103	rs41267037	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,80:29:139:0.580:2	./.	./.	./.	./.	./.	./.
chr1	40229368	rs2463260	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:34,23:32:57:0.404:2	0/1:19,11:32:30:0.367:2	./.	0/1:0,30:32:30:1.00:2	./.	0/1:2,25:31:27:0.926:2	./.	0/1:60,39:32:99:0.394:2	0/1:0,85:32:85:1.00:2	0/1:26,21:32:47:0.447:2	0/1:26,9:33:35:0.257:2
chr1	40229393	rs77290565	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,8:31:105:0.076:2	./.	./.	0/1:106,28:31:134:0.209:2	0/1:105,20:32:125:0.160:2	0/1:61,23:32:84:0.274:2	0/1:38,7:32:45:0.156:2
chr1	40229454	rs150014470	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:25:5:0.800:2	./.	0/1:0,8:28:8:1.00:2	./.	./.	./.	./.	0/1:101,6:26:107:0.056:2
chr1	40230336	rs76376226	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:160,38:31:198:0.192:2	0/1:141,53:31:194:0.273:2	./.	./.	0/1:132,62:32:194:0.320:2	0/1:141,49:33:190:0.258:2	0/1:123,66:32:189:0.349:2	./.
chr1	40230347	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,5:30:186:0.027:2	./.	./.	0/1:180,4:32:185:0.022:2	./.	./.
chr1	40230354	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,9:33:187:0.048:2	./.	./.	./.	./.	./.
chr1	40235448	rs150795467	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:149,34:30:185:0.186:2	0/1:162,29:32:191:0.152:2	0/1:51,19:31:70:0.271:2	0/1:143,55:31:198:0.278:2	0/1:170,22:32:192:0.115:2	0/1:160,31:31:191:0.162:2	0/1:161,32:32:195:0.166:2	./.	./.	./.	0/1:166,25:31:191:0.131:2
chr1	40235489	rs77857664	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:161,32:32:193:0.166:2	0/1:170,25:30:195:0.128:2	0/1:58,27:31:85:0.318:2	0/1:140,55:32:195:0.282:2	0/1:84,112:32:196:0.571:2	0/1:159,34:32:193:0.176:2	0/1:162,37:32:199:0.186:2	0/1:135,56:31:191:0.293:2	0/1:128,68:34:196:0.347:2	0/1:136,57:31:193:0.295:2	0/1:137,50:31:187:0.267:2
chr1	40235796	rs200725321	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:106,85:32:191:0.445:2	./.	./.	./.	./.	./.	./.	0/1:142,39:31:182:0.215:2
chr1	40235940	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:124,34:28:158:0.215:2	0/1:86,17:28:103:0.165:2	0/1:21,13:29:34:0.382:2	./.	0/1:149,48:29:197:0.244:2	0/1:141,44:29:185:0.238:2	./.	./.	./.	./.	./.
chr1	40236014	rs200262941	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,60:31:128:0.469:2	./.	./.	./.	./.	./.	./.	0/1:106,21:32:127:0.165:2
chr1	40236074	rs230321	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:85,18:30:103:0.175:2	0/1:48,16:30:64:0.250:2	./.	0/1:0,47:31:47:1.00:2	./.	0/1:4,45:30:50:0.918:2	0/1:122,20:30:142:0.141:2	./.	./.	0/1:168,14:30:182:0.077:2	0/1:3,60:30:63:0.952:2
chr1	40236580	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,3:29:24:0.125:2	./.	./.	./.	./.	./.
chr1	40239981	rs199841910	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,141:32:192:0.734:2	0/1:40,123:31:163:0.755:2	0/1:35,9:32:44:0.205:2	0/1:2,186:31:188:0.989:2	0/1:114,85:31:199:0.427:2	0/1:117,76:31:193:0.394:2	0/1:104,87:31:191:0.455:2	0/1:111,88:31:199:0.442:2	0/1:2,189:32:191:0.990:2	0/1:0,192:32:193:1.00:2	0/1:0,189:31:189:1.00:2
chr1	40240559	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,38:32:186:0.204:2	0/1:144,32:31:176:0.182:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	40240582	rs200876716	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,40:31:190:0.211:2	./.	./.	./.	./.
chr1	40240626	rs201381914	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,38:28:194:0.198:2	./.	./.	./.	./.
chr1	40240691	rs370056406	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,109:30:188:0.580:2	./.	./.	./.	./.	./.	./.	0/1:137,42:31:181:0.235:2
chr1	40309856	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:33:130:0.031:2
chr1	40310221	rs16826617	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,40:32:92:0.435:2	./.	./.	./.	./.	./.	./.
chr1	40313756	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,5:29:99:0.051:2	./.	./.	./.	./.
chr1	40315888	rs3738671	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,20:28:46:0.435:2	./.	./.	./.
chr1	40349131	rs3845570	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,33:31:67:0.493:2	0/1:40,35:31:75:0.467:2	0/1:34,35:31:69:0.507:2	0/1:51,4:32:55:0.073:2	0/1:0,77:31:77:1.00:2	./.	0/1:23,31:32:54:0.574:2	0/1:17,25:31:42:0.595:2
chr1	40363054	rs3134614	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:33:47:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,4:30:4:1.00:2	0/1:14,26:32:40:0.650:2	0/1:0,35:32:35:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,37:34:37:1.00:2	0/1:20,14:31:34:0.412:2	0/1:19,24:32:43:0.558:2
chr1	40363170	rs1800834	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,29:34:54:0.537:2	./.	./.
chr1	40366768	rs61751008	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,5:30:10:0.500:2	./.
chr1	40430937	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:33:134:0.030:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	40435157	rs41268047	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,63:29:136:0.463:2	0/1:62,39:27:101:0.386:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,87:28:187:0.465:2
chr1	40533266	rs11207440	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:32:42:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,73:31:73:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,56:33:56:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,50:31:50:1.00:2
chr1	40533287	rs6665926	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,16:27:16:1.00:2	0/1:0,9:30:9:1.00:2	./.	0/1:0,18:30:19:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,18:28:18:1.00:2	0/1:0,32:29:32:1.00:2	0/1:0,26:28:26:1.00:2	0/1:0,22:28:22:1.00:2	0/1:0,20:27:20:1.00:2	0/1:0,26:27:26:1.00:2
chr1	40533315	rs6665933	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,2:29:2:1.00:2	./.	./.	0/1:0,2:31:2:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,6:27:6:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.	./.	0/1:0,4:34:4:1.00:2
chr1	40533320	rs6665936	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	0/1:0,2:34:2:1.00:2	0/1:0,5:27:5:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,2:34:2:1.00:2	./.	0/1:0,2:30:2:1.00:2	0/1:0,2:34:2:1.00:2
chr1	40533326	rs6665937	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,5:34:5:1.00:2	./.	./.	0/1:0,11:34:11:1.00:2	0/1:1,12:35:13:0.923:2	0/1:0,10:34:10:1.00:2	0/1:0,11:35:11:1.00:2	0/1:0,7:35:7:1.00:2	0/1:0,6:36:6:1.00:2	0/1:0,5:32:5:1.00:2	0/1:1,8:33:9:0.889:2
chr1	40533347	rs6665944	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:32:20:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,45:33:45:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,51:34:51:1.00:2	0/1:1,38:33:39:0.974:2	0/1:0,36:35:36:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,27:33:27:1.00:2
chr1	40535481	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,12:15:64:0.188:2	0/1:69,8:22:77:0.104:2	0/1:62,8:17:70:0.114:2	./.	./.	./.
chr1	40535490	rs200369781	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:59,9:19:68:0.132:2	./.	./.	./.	./.	./.	0/1:68,9:20:77:0.117:2	0/1:69,11:15:80:0.138:2	0/1:66,8:18:74:0.108:2	0/1:38,11:18:49:0.224:2	0/1:68,9:18:78:0.117:2
chr1	40542557	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:34:47:0.085:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	40557033	rs1800205	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,37:32:83:0.446:2	./.	./.	./.
chr1	40559686	rs7533094	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,35:32:60:0.583:2	./.	./.	./.
chr1	40668244	rs112377652	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,61:30:170:0.359:2	./.	./.	./.	./.	./.
chr1	40703440	rs2235986	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,25:32:55:0.455:2	./.	./.	./.
chr1	40705726	rs10889205	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:27,29:32:56:0.518:2	0/1:13,8:32:21:0.381:2	0/1:2,3:31:5:0.600:2	./.	./.	./.	./.	./.	./.	0/1:23,17:30:40:0.425:2	./.
chr1	40716970	rs115454619	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,29:30:58:0.500:2	./.	./.	./.	./.	./.
chr1	40737589	rs2076697	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,54:32:105:0.514:2	./.	./.	./.	./.	./.	./.	0/1:82,94:32:176:0.534:2
chr1	40751689	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.	./.	./.	./.
chr1	40769588	rs112370406	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:29:4:1.00:2
chr1	40769783	rs77695700	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:30:5:0.800:2	./.	./.	./.	./.
chr1	40773123	rs2228567	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,5:32:6:0.833:2	0/1:42,28:28:70:0.400:2	./.	./.	./.	0/1:45,30:29:75:0.400:2	0/1:38,40:30:78:0.513:2	./.	./.
chr1	40773149	rs2228564	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,52:29:52:1.00:2	0/1:28,36:28:64:0.563:2	0/1:38,41:29:79:0.519:2	./.	0/1:81,4:29:85:0.047:2	./.	0/1:32,38:30:70:0.543:2
chr1	40773175	rs118135975	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:33:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	40775937	rs2228565	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,5:33:20:0.250:2
chr1	40776752	rs3737815	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,99:30:99:1.00:2	./.	./.	./.	./.	./.	0/1:45,38:31:83:0.458:2
chr1	40777800	rs1979785	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:31:7:0.714:2	./.	0/1:0,47:32:47:1.00:2	0/1:25,22:31:47:0.468:2	0/1:22,21:31:43:0.488:2	./.	./.	./.	0/1:23,25:32:48:0.521:2
chr1	40777804	rs78091688	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,19:27:44:0.432:2	0/1:22,18:26:40:0.450:2	./.	./.	./.	./.
chr1	40778108	rs140071740	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,48:31:89:0.539:2	./.	./.	./.
chr1	40840353	rs1003710	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,60:31:60:1.00:2	0/1:1,35:31:36:0.972:2	./.	0/1:1,108:32:109:0.991:2	./.	./.	0/1:44,22:31:66:0.333:2	0/1:63,37:30:100:0.370:2	0/1:64,62:32:127:0.492:2	0/1:40,41:31:81:0.506:2	./.
chr1	40881041	rs209606	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,101:31:101:1.00:2	0/1:0,55:30:55:1.00:2	./.	0/1:2,85:30:87:0.977:2	0/1:36,29:30:65:0.446:2	0/1:0,79:29:79:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,91:30:91:1.00:2	0/1:0,92:30:92:1.00:2	0/1:0,67:30:67:1.00:2	0/1:0,109:30:109:1.00:2
chr1	40922667	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:33:81:0.049:2	./.	./.	./.	./.
chr1	40923019	rs2272994	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,5:31:9:0.556:2	0/1:37,25:31:62:0.403:2	./.	0/1:42,32:30:74:0.432:2	0/1:24,37:31:61:0.607:2	./.	./.	0/1:36,19:32:55:0.345:2	./.
chr1	40928145	rs61740805	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,29:33:61:0.475:2	0/1:29,18:31:47:0.383:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	40960827	rs150232367	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,33:30:64:0.516:2	./.	./.	./.
chr1	40961063	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:32:101:0.040:2	./.	./.	./.
chr1	40961389	rs187272521	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,9:29:24:0.375:2	./.	./.	./.	./.	./.	./.
chr1	40961449	rs3795348	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,35:32:70:0.500:2	0/1:21,7:31:28:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	40980559	rs1134586	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:30:7:0.857:2	./.	./.	./.	0/1:24,19:32:43:0.442:2	./.	./.	./.	./.
chr1	40980668	rs35672330	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,48:33:101:0.475:2	./.	./.
chr1	40980731	rs11208299	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:72,51:32:123:0.415:2	0/1:35,28:31:63:0.444:2	0/1:8,5:29:13:0.385:2	./.	./.	0/1:92,62:31:154:0.403:2	0/1:77,63:31:140:0.450:2	./.	./.	0/1:48,42:31:90:0.467:2	./.
chr1	40981230	rs3795344	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,38:32:78:0.487:2	0/1:25,17:32:42:0.405:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	40981884	rs193145548	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,56:32:152:0.368:2	./.	./.	./.	./.
chr1	40982042	rs7522878	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,9:28:18:0.500:2	./.	./.	./.	0/1:10,6:28:16:0.375:2	./.
chr1	40998811	rs6659361	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,36:30:74:0.486:2	./.	./.	./.	./.
chr1	41013015	rs2297755	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,12:31:53:0.226:2	./.	./.	./.	0/1:30,27:31:57:0.474:2	./.
chr1	41204569	rs1057925	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:0,38:31:38:1.00:2	./.	0/1:52,46:31:98:0.469:2	0/1:49,38:31:87:0.437:2	0/1:0,91:31:91:1.00:2	0/1:1,108:31:109:0.991:2	0/1:82,56:31:138:0.406:2	0/1:40,39:31:79:0.494:2	0/1:46,34:31:80:0.425:2	0/1:0,123:31:123:1.00:2
chr1	41223014	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:32:186:0.022:2	./.	./.	./.	./.	./.
chr1	41285087	rs4660468	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,41:29:105:0.394:2	0/1:25,24:30:49:0.490:2	0/1:0,24:30:24:1.00:2	0/1:0,168:30:168:1.00:2	0/1:111,74:31:185:0.400:2	0/1:82,72:29:154:0.468:2	0/1:112,75:30:187:0.401:2	0/1:1,183:29:184:0.995:2	0/1:83,77:30:160:0.481:2	./.	0/1:0,107:30:107:1.00:2
chr1	41285553	rs55737429	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,83:32:186:0.446:2	./.	./.	./.	./.	./.
chr1	41296828	rs34287852	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,59:32:121:0.488:2	0/1:32,44:32:76:0.579:2	0/1:20,9:33:29:0.310:2	0/1:92,83:31:175:0.474:2	0/1:107,74:30:182:0.409:2	./.	0/1:104,52:31:156:0.333:2	./.	0/1:92,69:33:161:0.429:2	./.	./.
chr1	41300690	rs55964611	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:106,92:31:198:0.465:2	./.	./.	./.	./.	./.	./.
chr1	41485902	rs3738368	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:31:10:1.00:2	./.	0/1:22,25:33:47:0.532:2	./.	./.	0/1:34,22:32:56:0.393:2	0/1:0,49:33:49:1.00:2	0/1:23,26:33:49:0.531:2	./.
chr1	41485933	rs61734920	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,30:32:50:0.600:2	./.	./.	./.	./.	./.	./.	./.
chr1	41486245	rs1138293	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,13:31:33:0.394:2	./.	./.	0/1:18,20:32:38:0.526:2	0/1:24,19:30:43:0.442:2	0/1:14,10:30:24:0.417:2	./.
chr1	41512116	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:34:166:0.024:2	./.
chr1	41618304	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,13:32:35:0.371:2	./.	./.
chr1	41848296	rs4359027	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,18:26:28:0.643:2	0/1:16,15:25:31:0.484:2	0/1:2,33:27:35:0.943:2	0/1:0,24:27:24:1.00:2	./.	0/1:6,8:29:14:0.571:2	./.
chr1	41950274	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:92,88:30:180:0.489:2	./.	./.	./.	./.	./.	./.
chr1	41950287	rs11572343	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,24:30:42:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	41976328	rs9439043	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,2:28:2:1.00:2	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr1	41978566	rs2991344	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,15:33:15:1.00:2	0/1:0,7:32:7:1.00:2	./.	0/1:0,18:31:18:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,13:31:14:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,17:29:17:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,10:31:10:1.00:2
chr1	41978825	rs2483689	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,115:31:115:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,144:31:144:1.00:2	0/1:0,97:31:97:1.00:2	0/1:0,142:32:142:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,134:31:134:1.00:2	0/1:0,152:32:152:1.00:2	0/1:0,120:31:120:1.00:2	0/1:0,111:31:111:1.00:2
chr1	41979156	rs615177	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,6:32:17:0.353:2	0/1:0,15:31:15:1.00:2	0/1:0,8:32:8:1.00:2	./.	0/1:0,11:32:11:1.00:2	./.	0/1:8,5:31:13:0.385:2	./.
chr1	41979249	rs12744227	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:18,23:24:43:0.561:2	0/1:9,12:31:21:0.571:2	./.	./.	./.	./.	./.	./.	./.	0/1:19,17:27:37:0.472:2	./.
chr1	42046613	rs12132697	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,37:31:71:0.521:2	0/1:3,37:31:40:0.925:2	0/1:46,33:30:79:0.418:2	./.	./.	0/1:23,26:32:49:0.531:2	0/1:1,46:32:47:0.979:2	./.
chr1	42046812	rs2810565	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:30:35:1.00:2	0/1:0,18:31:19:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,41:28:41:1.00:2	0/1:0,27:29:28:1.00:2	0/1:0,48:28:48:1.00:2	0/1:0,37:29:38:1.00:2	0/1:0,31:29:33:1.00:2	0/1:0,36:28:36:1.00:2	0/1:0,32:31:33:1.00:2	0/1:0,31:31:32:1.00:2
chr1	42047300	rs41269473	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,33:31:61:0.541:2	./.	./.	./.
chr1	42048745	rs2810566	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:26:39:1.00:2	0/1:0,24:28:24:1.00:2	0/1:0,2:28:2:1.00:2	0/1:1,44:27:45:0.978:2	0/1:0,50:28:50:1.00:2	0/1:0,46:28:46:1.00:2	0/1:0,43:28:43:1.00:2	0/1:0,51:28:51:1.00:2	0/1:2,66:29:68:0.971:2	0/1:0,27:26:27:1.00:2	0/1:0,52:26:52:1.00:2
chr1	42049032	rs2984694	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,79:31:80:0.988:2	0/1:0,51:31:51:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,183:31:183:1.00:2	0/1:1,127:31:128:0.992:2	0/1:2,154:31:156:0.987:2	0/1:0,173:31:173:1.00:2	0/1:0,125:32:126:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,86:31:86:1.00:2
chr1	42049140	rs2475842	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:32:56:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,117:32:117:1.00:2	0/1:2,128:32:130:0.985:2	0/1:0,80:33:80:1.00:2	0/1:0,69:33:69:1.00:2	0/1:0,60:31:60:1.00:2
chr1	42050366	rs2146315	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,12:31:28:0.429:2	./.	0/1:12,17:28:29:0.586:2	./.	0/1:0,60:31:60:1.00:2	./.	./.	./.
chr1	42619152	rs2297567	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,22:30:50:0.440:2	0/1:2,45:31:47:0.957:2	./.	0/1:14,16:31:30:0.533:2	0/1:13,17:31:30:0.567:2	0/1:11,22:32:33:0.667:2
chr1	42630364	rs2071499	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,56:31:113:0.496:2	0/1:29,45:31:74:0.608:2	0/1:0,7:32:7:1.00:2	0/1:2,140:30:142:0.986:2	0/1:0,192:30:192:1.00:2	0/1:100,88:30:188:0.468:2	./.	0/1:2,184:30:186:0.989:2	./.	0/1:96,71:31:167:0.425:2	0/1:60,38:31:98:0.388:2
chr1	42657196	rs1139978	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,25:31:63:0.397:2	./.	./.	./.	./.	./.	./.	./.	0/1:99,87:32:186:0.468:2
chr1	42693597	rs343376	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:30:48:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,71:30:71:1.00:2	0/1:0,24:30:24:1.00:2	0/1:27,29:30:56:0.518:2	./.	0/1:0,78:30:78:1.00:2	0/1:54,25:31:79:0.316:2	0/1:34,22:31:56:0.393:2	0/1:43,30:29:73:0.411:2
chr1	42776695	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,5:21:49:0.102:2	./.	./.	./.	./.	./.
chr1	42776699	rs200354449	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:48,9:15:57:0.158:2	./.	./.	0/1:62,13:18:75:0.173:2	0/1:59,9:17:68:0.132:2	0/1:46,8:20:54:0.148:2	./.	./.	0/1:49,9:15:58:0.155:2	0/1:48,6:20:54:0.111:2	0/1:46,11:20:57:0.193:2
chr1	42880516	rs1055055	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,26:29:61:0.426:2	0/1:20,24:28:44:0.545:2	0/1:2,6:28:8:0.750:2	0/1:0,76:29:76:1.00:2	0/1:0,92:28:92:1.00:2	0/1:29,25:30:54:0.463:2	0/1:51,51:29:102:0.500:2	0/1:3,103:29:106:0.972:2	0/1:0,111:30:111:1.00:2	0/1:32,38:29:70:0.543:2	0/1:33,44:28:77:0.571:2
chr1	42898843	rs1034268	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,66:33:66:1.00:2	0/1:0,55:33:55:1.00:2	./.	0/1:1,73:33:74:0.986:2	0/1:0,41:32:41:1.00:2	0/1:45,24:32:69:0.348:2	0/1:21,13:33:34:0.382:2	0/1:45,39:34:84:0.464:2	0/1:40,55:34:95:0.579:2	0/1:35,42:33:77:0.545:2	./.
chr1	42915727	rs12047095	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,13:32:34:0.382:2	0/1:13,6:31:19:0.316:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	42922946	rs115737664	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,60:32:142:0.423:2	./.	./.	./.	./.	./.
chr1	42925365	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,12:13:96:0.125:2
chr1	43042703	rs12049046	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,21:32:62:0.339:2	0/1:18,14:32:32:0.438:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	43047057	rs12037518	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,69:33:170:0.406:2	0/1:38,59:33:97:0.608:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	43076681	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:34:54:0.074:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	43108188	rs12036818	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,58:30:119:0.487:2	./.	./.	./.
chr1	43119595	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,3:33:50:0.060:2	./.
chr1	43119661	rs16829829	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,33:32:73:0.452:2	0/1:15,22:32:37:0.595:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	43125032	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:31:102:0.039:2	./.	./.	./.	./.
chr1	43131653	rs12244	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,98:32:198:0.495:2	./.	./.	./.
chr1	43161877	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,5:34:53:0.094:2	./.
chr1	43161928	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:32:120:0.033:2	./.
chr1	43162450	rs200382855	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:32:153:0.026:2
chr1	43162494	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:32:48:0.083:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	43162501	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:31:49:0.082:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	43166460	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,5:32:136:0.037:2	./.	./.	./.
chr1	43166630	rs200741644	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:136,23:30:159:0.145:2	0/1:142,25:30:167:0.150:2	0/1:145,5:31:150:0.033:2	0/1:136,7:30:143:0.049:2	0/1:157,11:31:168:0.065:2	0/1:147,10:31:157:0.064:2	0/1:118,5:28:123:0.041:2	./.
chr1	43166653	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:149,7:32:156:0.045:2	./.	./.	./.	./.	./.	./.
chr1	43201614	rs9660973	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,28:32:49:0.571:2	0/1:15,25:32:40:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	43212431	rs4660662	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,107:31:107:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,16:34:16:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,80:30:80:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,123:32:123:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,92:30:92:1.00:2
chr1	43212869	rs3738496	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,69:30:137:0.507:2	./.	0/1:51,59:31:110:0.536:2	0/1:57,46:30:103:0.447:2	./.
chr1	43212926	rs67014447	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,29:29:51:0.569:2	0/1:16,23:30:39:0.590:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	43215930	rs11581921	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,10:31:14:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	43223489	rs6700677	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,39:31:83:0.470:2	0/1:21,24:31:45:0.533:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	43232504	rs55716016	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,8:30:13:0.615:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	43259364	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:189,5:30:194:0.026:2	./.	./.	./.	./.	./.	./.
chr1	43296118	rs12124733	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,91:32:191:0.476:2	./.	./.	./.
chr1	43296173	rs33950227	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:68,32:32:100:0.320:2	0/1:31,30:32:61:0.492:2	./.	0/1:77,54:31:131:0.412:2	0/1:2,139:31:141:0.986:2	0/1:83,46:31:129:0.357:2	./.	./.	./.	./.	./.
chr1	43296174	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,5:30:128:0.039:2	./.	./.	./.	./.	./.
chr1	43296195	rs33953680	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:58,26:31:85:0.310:2	0/1:27,24:31:51:0.471:2	./.	0/1:55,44:29:99:0.444:2	0/1:1,109:30:110:0.991:2	0/1:65,31:29:97:0.323:2	0/1:66,43:31:109:0.394:2	./.	./.	./.	./.
chr1	43301454	rs34475455	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,40:32:66:0.606:2	./.	./.	./.	./.
chr1	43305753	rs12034000	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,56:31:163:0.344:2	./.	./.	./.
chr1	43317332	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,4:32:64:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr1	43317696	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:32:74:0.054:2
chr1	43317793	rs9960	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,29:30:31:0.935:2	./.	0/1:99,90:31:189:0.476:2	./.	./.	./.	./.	./.	./.
chr1	43317887	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:31:176:0.023:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	43395635	rs2229682	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,95:32:186:0.511:2	0/1:98,98:32:196:0.500:2	./.	./.	./.	./.	./.	./.
chr1	43396414	rs11537641	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,43:31:78:0.551:2	0/1:37,32:30:70:0.464:2	./.	./.	./.	./.	./.	./.
chr1	43408966	rs1385129	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,33:32:69:0.478:2	0/1:54,47:32:101:0.465:2	./.	./.	./.	./.	./.	./.
chr1	43610910	rs626842	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,4:34:114:0.035:2	0/1:0,58:32:58:1.00:2	0/1:40,46:32:86:0.535:2	0/1:54,38:33:92:0.413:2	0/1:47,36:32:83:0.434:2	./.	./.	./.
chr1	43618596	rs12074551	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,99:30:101:0.990:2	./.	0/1:81,61:31:142:0.430:2	./.	./.	./.	./.
chr1	43632536	rs7163	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,41:32:41:1.00:2	./.	0/1:31,13:32:44:0.295:2	./.	./.	./.	./.
chr1	43636484	rs1049276	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,77:33:78:0.987:2	./.	0/1:57,54:33:111:0.486:2	./.	./.	./.	./.
chr1	43637549	rs1691289	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,70:28:72:0.972:2	./.	0/1:42,39:28:81:0.481:2	./.	./.	./.	./.
chr1	43638457	rs1782387	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,133:29:136:0.978:2	./.	0/1:101,76:29:177:0.429:2	./.	./.	./.	./.
chr1	43649336	rs75528102	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,44:30:117:0.376:2	./.	./.	./.
chr1	43649393	rs663336	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,61:32:140:0.436:2	./.	./.	./.
chr1	43649508	rs663824	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,93:30:94:0.989:2	0/1:51,52:30:103:0.505:2	0/1:60,59:30:119:0.496:2	0/1:57,56:31:113:0.496:2	./.	./.	./.
chr1	43652442	rs11210805	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,37:32:88:0.420:2	./.	./.	./.
chr1	43664218	rs603123	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,53:31:56:0.946:2	./.	0/1:31,32:32:63:0.508:2	./.	./.	./.	./.
chr1	43675467	rs2453412	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,119:31:121:0.983:2	0/1:0,79:31:79:1.00:2	0/1:0,27:31:27:1.00:2	0/1:1,171:31:172:0.994:2	0/1:0,167:31:167:1.00:2	0/1:0,187:31:187:1.00:2	0/1:1,166:32:167:0.994:2	0/1:97,96:32:194:0.497:2	0/1:2,161:32:163:0.988:2	0/1:1,139:31:141:0.993:2	0/1:3,124:31:127:0.976:2
chr1	43675499	rs41301054	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,50:32:115:0.435:2	0/1:83,73:32:156:0.468:2	./.	./.	./.
chr1	43687832	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,58:32:99:0.586:2	./.	./.
chr1	43699970	rs2484714	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,21:29:57:0.368:2	./.	./.	./.	./.	./.
chr1	43738603	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,33:31:79:0.418:2	./.	./.	./.	./.	./.	./.	./.
chr1	43738633	rs371951750	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:30:52:0.077:2
chr1	43738829	rs142942435	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,51:31:100:0.510:2	./.	./.	./.	./.	./.
chr1	43766756	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,26:10:181:0.145:2	./.
chr1	43772905	rs184359533	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,17:30:29:0.586:2	./.
chr1	43775114	rs148779141	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,83:32:189:0.439:2	./.	./.	./.	./.	./.
chr1	43777400	rs143131144	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,41:29:86:0.477:2	./.	./.	./.	./.	./.
chr1	43779564	rs3120276	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,18:29:18:1.00:2	0/1:91,72:30:163:0.442:2	0/1:103,81:31:184:0.440:2	0/1:90,79:30:169:0.467:2	0/1:95,94:30:189:0.497:2	0/1:0,184:29:184:1.00:2	0/1:0,141:30:141:1.00:2	0/1:69,61:29:130:0.469:2	0/1:52,50:30:102:0.490:2
chr1	43782900	rs149581858	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:32:5:0.800:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	43784956	rs1199039	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,69:32:69:1.00:2	0/1:0,47:32:47:1.00:2	./.	0/1:62,55:33:117:0.470:2	0/1:0,64:32:64:1.00:2	0/1:3,101:32:104:0.971:2	0/1:68,56:32:124:0.452:2	./.	./.	0/1:48,45:33:93:0.484:2	0/1:61,45:33:106:0.425:2
chr1	43804340	rs12731981	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,29:30:56:0.518:2	./.	./.	./.
chr1	43825644	rs839763	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,47:31:47:1.00:2	0/1:0,24:31:24:1.00:2	./.	0/1:28,36:31:64:0.563:2	0/1:30,29:30:59:0.492:2	0/1:0,67:31:67:1.00:2	0/1:45,22:32:67:0.328:2	./.	./.	0/1:35,33:32:68:0.485:2	0/1:32,27:31:59:0.458:2
chr1	43829751	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:31:105:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	43891587	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:29:97:0.041:2	./.	./.	./.
chr1	43893100	rs140788949	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,27:29:65:0.415:2	./.	./.	./.	./.	./.
chr1	43902952	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,27:31:66:0.409:2
chr1	43905286	rs72671125	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,47:30:108:0.435:2	./.	./.	./.	./.	./.	./.
chr1	43906896	rs2027130	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:1,27:32:28:0.964:2	./.	0/1:25,23:32:48:0.479:2	0/1:29,25:33:54:0.463:2	0/1:39,27:32:66:0.409:2	0/1:0,56:33:56:1.00:2	0/1:23,27:33:50:0.540:2	./.	0/1:17,28:33:45:0.622:2	0/1:0,75:33:75:1.00:2
chr1	43913893	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:30:64:0.063:2	./.	./.	./.	./.
chr1	43917637	rs2251802	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,87:30:87:1.00:2	0/1:1,59:31:60:0.983:2	./.	0/1:73,55:29:128:0.430:2	0/1:59,63:30:122:0.516:2	0/1:1,130:30:131:0.992:2	0/1:3,125:30:128:0.977:2	0/1:80,72:31:152:0.474:2	./.	0/1:64,47:30:111:0.423:2	0/1:0,83:30:83:1.00:2
chr1	43919098	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,4:32:41:0.098:2	./.	./.	./.	./.	./.	./.
chr1	44035352	rs1065771	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:32,18:32:50:0.360:2	0/1:33,19:33:52:0.365:2	0/1:0,17:32:17:1.00:2	./.	./.	./.	0/1:46,74:32:120:0.617:2	./.	./.	0/1:34,50:33:84:0.595:2	./.
chr1	44058265	rs3828151	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,8:32:11:0.727:2	./.	0/1:0,2:32:2:1.00:2	0/1:9,12:31:21:0.571:2	0/1:19,15:31:34:0.441:2	0/1:11,8:30:19:0.421:2	0/1:11,13:31:24:0.542:2	0/1:7,14:30:21:0.667:2	./.	0/1:12,11:31:23:0.478:2	./.
chr1	44069850	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,40:33:69:0.580:2
chr1	44070631	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:32:72:0.056:2	./.	./.	./.	./.	./.
chr1	44071221	rs631248	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,151:29:152:0.993:2	0/1:2,95:30:97:0.979:2	0/1:0,36:29:36:1.00:2	0/1:0,185:29:185:1.00:2	0/1:1,177:29:179:0.994:2	0/1:0,180:29:181:1.00:2	0/1:1,190:29:192:0.995:2	0/1:114,72:29:187:0.387:2	./.	0/1:106,78:30:184:0.424:2	0/1:1,173:30:176:0.994:2
chr1	44072018	rs1065772	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:20,22:33:42:0.524:2	0/1:16,8:32:24:0.333:2	0/1:0,3:31:3:1.00:2	./.	./.	./.	0/1:1,38:32:39:0.974:2	./.	./.	0/1:22,12:32:34:0.353:2	0/1:24,25:31:49:0.510:2
chr1	44072066	rs10890266	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:12,11:31:23:0.478:2	0/1:12,9:32:21:0.429:2	./.	./.	./.	./.	0/1:2,31:32:33:0.939:2	./.	./.	0/1:16,5:33:21:0.238:2	0/1:24,18:32:42:0.429:2
chr1	44083507	rs641365	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,135:30:136:0.993:2	0/1:0,96:29:96:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,166:30:166:1.00:2	0/1:0,171:30:171:1.00:2	0/1:0,169:30:171:1.00:2	0/1:0,181:30:181:1.00:2	0/1:102,79:30:181:0.436:2	./.	0/1:82,76:30:158:0.481:2	0/1:1,171:29:172:0.994:2
chr1	44083519	rs641351	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,125:31:126:0.992:2	0/1:0,86:30:86:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,176:30:177:1.00:2	0/1:0,174:30:174:1.00:2	0/1:0,178:30:178:1.00:2	0/1:0,185:31:186:1.00:2	0/1:103,79:30:182:0.434:2	./.	0/1:89,82:31:171:0.480:2	0/1:1,177:30:179:0.994:2
chr1	44084739	rs1143701	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:30:61:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,102:30:102:1.00:2	0/1:0,102:29:102:1.00:2	0/1:0,117:30:117:1.00:2	0/1:63,39:31:103:0.382:2	./.	0/1:62,33:31:95:0.347:2	0/1:1,54:31:55:0.982:2
chr1	44086831	rs1143702	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,155:32:157:0.987:2	0/1:0,112:32:112:1.00:2	0/1:0,31:31:31:1.00:2	0/1:112,80:31:192:0.417:2	0/1:114,82:31:196:0.418:2	0/1:94,97:30:191:0.508:2	0/1:1,190:31:191:0.995:2	./.	./.	0/1:86,82:32:169:0.488:2	0/1:0,172:32:172:1.00:2
chr1	44128568	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:33:131:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	44128758	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,3:32:49:0.061:2	./.	./.	./.	./.	./.
chr1	44133496	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:33:183:0.022:2	./.	./.
chr1	44137257	rs586339	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:31:66:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,68:30:68:1.00:2	0/1:1,62:32:63:0.984:2	0/1:58,40:31:98:0.408:2	./.	0/1:31,25:31:56:0.446:2	0/1:0,89:32:89:1.00:2
chr1	44169784	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:33:106:0.038:2	./.	./.	./.	./.
chr1	44202061	rs147330005	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,27:33:62:0.435:2	./.	./.	./.	./.	./.	./.	./.
chr1	44290530	rs37458	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,12:30:37:0.324:2	0/1:5,8:28:13:0.615:2	./.	0/1:14,20:30:34:0.588:2	0/1:2,16:29:18:0.889:2	0/1:17,17:30:34:0.500:2	0/1:13,15:32:28:0.536:2	./.	0/1:21,9:29:30:0.300:2	0/1:5,13:29:18:0.722:2	0/1:33,22:31:55:0.400:2
chr1	44401384	rs2242637	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,48:30:49:0.980:2	0/1:0,36:30:36:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,59:30:59:1.00:2	0/1:2,82:30:84:0.976:2	0/1:2,107:30:109:0.982:2	0/1:0,93:30:93:1.00:2	0/1:77,36:29:113:0.319:2	0/1:0,82:31:82:1.00:2	0/1:1,64:31:65:0.985:2	0/1:0,80:30:80:1.00:2
chr1	44415415	rs2240447	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,107:32:107:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,23:31:23:1.00:2	0/1:1,139:31:140:0.993:2	0/1:0,174:31:174:1.00:2	0/1:81,60:31:141:0.426:2	0/1:1,162:31:163:0.994:2	0/1:107,87:31:194:0.448:2	0/1:66,61:32:127:0.480:2	0/1:3,108:32:111:0.973:2	0/1:0,116:31:116:1.00:2
chr1	44422622	rs17402858	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,33:32:71:0.465:2
chr1	44423187	rs146216435	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,79:31:185:0.427:2	./.	./.	./.	./.	./.
chr1	44437389	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,10:30:21:0.476:2	./.	./.	./.	./.	./.	./.	./.
chr1	44442508	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:32:132:0.030:2	./.	./.	./.
chr1	44442521	rs12410334	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:33:88:1.00:2	0/1:1,66:33:67:0.985:2	0/1:0,10:32:10:1.00:2	0/1:3,86:33:89:0.966:2	0/1:1,98:32:101:0.990:2	0/1:51,49:32:100:0.490:2	0/1:0,96:32:96:1.00:2	0/1:66,49:32:115:0.426:2	0/1:43,47:33:90:0.522:2	0/1:0,65:33:65:1.00:2	0/1:0,87:32:87:1.00:2
chr1	44447584	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,26:27:65:0.400:2
chr1	44450686	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,6:22:54:0.111:2	./.	0/1:50,3:34:53:0.057:2	./.	./.	./.
chr1	44461822	rs2301983	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,20:29:42:0.476:2	./.
chr1	44467987	rs61733181	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,96:31:194:0.495:2	./.	./.	./.
chr1	44468235	rs2248829	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,45:30:99:0.455:2	./.	./.	./.	./.	./.
chr1	44474083	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:132,4:32:136:0.029:2	./.	./.	./.	./.	./.	./.
chr1	44474199	rs369079873	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:33:150:0.027:2
chr1	44595047	rs11210969	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,95:32:95:1.00:2	0/1:44,28:31:72:0.389:2	0/1:39,46:31:85:0.541:2	./.	./.	0/1:34,43:32:77:0.558:2	./.	./.
chr1	44595113	rs2429051	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,57:31:58:0.983:2	0/1:0,46:32:46:1.00:2	0/1:0,11:32:11:1.00:2	0/1:1,67:32:68:0.985:2	0/1:1,48:31:49:0.980:2	0/1:30,38:31:69:0.559:2	0/1:26,36:32:62:0.581:2	0/1:44,30:31:74:0.405:2	0/1:32,36:32:68:0.529:2	0/1:0,53:31:53:1.00:2	0/1:26,40:32:66:0.606:2
chr1	44595410	rs2485652	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,13:32:13:1.00:2	0/1:1,19:31:20:0.950:2	./.	./.	0/1:10,4:30:14:0.286:2	./.	0/1:5,3:33:8:0.375:2	0/1:11,8:30:19:0.421:2	./.	0/1:0,8:31:8:1.00:2	./.
chr1	44595426	rs2429050	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,15:33:15:1.00:2	0/1:0,17:31:17:1.00:2	./.	./.	0/1:6,5:32:11:0.455:2	./.	0/1:6,3:33:9:0.333:2	0/1:11,8:29:19:0.421:2	./.	0/1:0,7:32:7:1.00:2	./.
chr1	44596217	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:33:183:0.022:2	./.	./.	./.	./.	./.
chr1	44788398	rs161721	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:32:70:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,102:31:102:1.00:2	0/1:1,101:32:102:0.990:2	0/1:0,106:32:106:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,83:32:83:1.00:2
chr1	44878004	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,6:33:169:0.036:2
chr1	45098023	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:171,4:31:176:0.023:2	./.	./.	./.	./.	./.	./.
chr1	45111031	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,54:30:111:0.486:2	./.	./.	./.
chr1	45111156	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,4:32:116:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr1	45163890	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:32:137:0.029:2	./.	./.	./.	./.
chr1	45190800	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:32:135:0.030:2	./.
chr1	45218849	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,53:32:132:0.402:2	./.	./.	./.	./.	./.
chr1	45218895	rs3795713	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,40:32:98:0.408:2	0/1:39,27:32:66:0.409:2	./.	./.	./.	0/1:70,67:31:137:0.489:2	0/1:96,97:31:193:0.503:2	./.	./.	0/1:67,46:32:114:0.407:2	./.
chr1	45221622	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:31:144:0.028:2
chr1	45224901	rs7524294	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,54:31:130:0.415:2	./.	./.	./.	./.	./.	./.
chr1	45224998	rs4342887	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:32,37:32:69:0.536:2	0/1:35,17:33:52:0.327:2	./.	./.	./.	./.	0/1:77,84:32:161:0.522:2	./.	./.	0/1:41,32:32:73:0.438:2	./.
chr1	45226084	rs1140279	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:15,22:31:37:0.595:2	0/1:19,14:33:33:0.424:2	./.	./.	./.	./.	0/1:36,36:32:72:0.500:2	./.	./.	0/1:40,22:32:62:0.355:2	./.
chr1	45241285	rs12120833	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:27,19:31:46:0.413:2	0/1:30,19:31:49:0.388:2	./.	./.	./.	./.	0/1:64,42:32:106:0.396:2	./.	./.	0/1:42,43:32:85:0.506:2	./.
chr1	45269333	rs17886354	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,93:31:95:0.979:2	./.	./.
chr1	45269690	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:30:114:0.035:2	./.	./.	./.	./.	./.
chr1	45270024	rs11211036	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:39,48:29:87:0.552:2	0/1:24,23:29:47:0.489:2	./.	./.	./.	./.	0/1:47,44:29:91:0.484:2	./.	./.	0/1:38,23:27:61:0.377:2	./.
chr1	45270034	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:30:113:0.036:2
chr1	45272048	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	45272321	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,4:29:22:0.182:2	./.
chr1	45276242	rs183942444	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,92:31:190:0.484:2	./.	./.	./.	./.	./.	./.	./.
chr1	45288989	rs201010330	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:154,4:33:158:0.025:2	./.	./.	./.	./.	./.	./.
chr1	45292866	rs2295996	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,21:30:39:0.538:2	./.	./.	./.	0/1:0,28:31:28:1.00:2	./.	0/1:18,21:31:39:0.538:2
chr1	45293518	rs7525308	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:34,24:34:58:0.414:2	0/1:19,22:33:41:0.537:2	./.	./.	0/1:40,34:32:74:0.459:2	0/1:32,28:32:60:0.467:2	0/1:46,44:32:90:0.489:2	./.	0/1:0,46:32:46:1.00:2	0/1:39,26:32:65:0.400:2	0/1:35,21:33:56:0.375:2
chr1	45293752	rs2295997	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:22,9:34:31:0.290:2	0/1:13,9:32:22:0.409:2	./.	./.	./.	./.	0/1:37,24:33:61:0.393:2	./.	./.	0/1:17,15:32:32:0.469:2	./.
chr1	45307694	rs45573433	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,29:30:61:0.475:2	./.	./.	./.	./.	./.	./.	./.
chr1	45444038	rs11556200	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,28:32:53:0.528:2	0/1:14,14:33:28:0.500:2	./.	./.	./.	0/1:37,26:31:63:0.413:2	0/1:0,52:32:52:1.00:2	0/1:42,32:31:74:0.432:2	./.	0/1:26,19:33:45:0.422:2	./.
chr1	45469155	rs11548990	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,15:32:18:0.833:2	0/1:54,56:30:110:0.509:2	./.	./.	0/1:133,4:31:137:0.029:2	./.	./.	./.	./.
chr1	45469161	rs113451625	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,55:30:119:0.466:2	./.	./.	./.	./.	./.
chr1	45469176	rs12749251	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:47,37:31:84:0.440:2	0/1:24,34:31:58:0.586:2	./.	./.	./.	./.	0/1:85,65:31:150:0.433:2	./.	./.	0/1:49,42:31:91:0.462:2	./.
chr1	45469586	rs41312020	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,4:28:8:0.500:2	0/1:22,44:30:66:0.667:2	./.	./.	./.	./.	./.	./.	./.
chr1	45474008	rs7541207	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:74,78:32:152:0.513:2	0/1:43,33:32:76:0.434:2	./.	./.	./.	./.	0/1:3,122:32:125:0.976:2	0/1:103,69:32:172:0.401:2	./.	0/1:74,71:32:145:0.490:2	./.
chr1	45475278	rs61741088	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,41:31:95:0.432:2	./.	./.	./.	./.	./.
chr1	45479709	rs2228084	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,10:30:25:0.400:2	0/1:96,82:30:179:0.461:2	./.	./.	./.	./.	./.	./.	./.
chr1	45504720	rs7551698	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,12:27:32:0.375:2	0/1:0,25:28:25:1.00:2	0/1:15,14:30:29:0.483:2	./.	./.	0/1:1,23:30:24:0.958:2	0/1:22,11:28:33:0.333:2	0/1:0,28:28:28:1.00:2
chr1	45553712	rs116809634	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:74,69:30:143:0.483:2	./.	./.	./.	./.	./.	./.
chr1	45671966	rs4454584	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,8:32:19:0.421:2	./.	0/1:0,3:31:3:1.00:2	0/1:5,4:32:9:0.444:2	./.	0/1:8,7:32:15:0.467:2	./.	./.	./.	./.	./.
chr1	45794015	rs56015816	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,44:32:101:0.436:2	./.	./.	./.	./.	./.
chr1	45797505	rs3219489	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,7:31:24:0.292:2	0/1:1,4:33:5:0.800:2	./.	./.	./.	0/1:7,10:29:17:0.588:2	0/1:13,11:32:24:0.458:2	0/1:19,17:32:36:0.472:2	./.	0/1:13,11:31:24:0.458:2	0/1:9,7:32:16:0.438:2
chr1	45797707	rs147718169	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,34:32:78:0.436:2
chr1	45805566	rs3219468	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:32:86:1.00:2	0/1:2,35:32:37:0.946:2	0/1:0,8:32:8:1.00:2	0/1:0,116:32:116:1.00:2	0/1:0,114:31:114:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,105:31:106:1.00:2	0/1:0,99:31:99:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,114:31:114:1.00:2
chr1	45806772	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:33:104:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	45808766	rs201599186	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,8:19:109:0.073:2
chr1	45808863	rs9429157	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,31:30:55:0.564:2	./.	./.	./.	0/1:20,14:29:34:0.412:2	./.
chr1	45809035	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:32:44:0.091:2	./.	./.	./.	./.
chr1	45810923	rs3893383	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,12:33:28:0.429:2	0/1:7,6:33:13:0.462:2	./.	./.	./.	0/1:15,10:32:25:0.400:2	0/1:19,11:32:30:0.367:2	./.	./.	./.	./.
chr1	45811136	rs74826378	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,47:30:85:0.553:2	./.	./.	./.	./.	./.
chr1	45887487	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:31:103:0.039:2	./.	./.
chr1	45965100	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,4:30:92:0.043:2	./.	./.	./.	./.	./.	./.
chr1	45973124	rs6662272	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,69:32:150:0.460:2	./.	./.	./.	./.	./.
chr1	45973928	rs2275276	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,37:29:67:0.552:2	0/1:26,17:30:43:0.395:2	0/1:3,9:29:12:0.750:2	0/1:3,63:28:66:0.955:2	0/1:58,19:26:77:0.247:2	0/1:36,39:28:75:0.520:2	./.	0/1:60,45:28:106:0.429:2	0/1:0,59:29:59:1.00:2	0/1:45,27:27:72:0.375:2	0/1:42,40:29:82:0.488:2
chr1	45981331	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:32:62:0.065:2	./.	./.	./.	./.	./.
chr1	45981334	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:32:70:0.057:2	./.	./.	./.	./.	./.
chr1	45981381	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:31:135:0.030:2	./.	./.	./.	./.	./.
chr1	46027474	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,4:31:12:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	46032311	rs2229540	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,52:32:92:0.565:2	./.	./.	./.	./.	./.	./.
chr1	46032543	rs41269113	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,15:32:42:0.357:2	./.	./.	./.	./.	./.
chr1	46066075	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2
chr1	46072197	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:32:43:0.093:2	./.
chr1	46073489	rs2230657	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,21:32:48:0.438:2	0/1:12,15:32:27:0.556:2	0/1:13,3:31:16:0.188:2	0/1:0,78:30:78:1.00:2	0/1:24,32:30:56:0.571:2	0/1:29,30:30:59:0.508:2	./.	0/1:46,33:31:79:0.418:2	0/1:1,74:31:75:0.987:2	0/1:29,23:30:52:0.442:2	./.
chr1	46073597	rs76379164	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:88,4:35:92:0.043:2	./.	./.	./.	0/1:82,4:31:86:0.047:2	./.	0/1:116,10:30:126:0.079:2	./.	0/1:101,5:30:106:0.047:2	0/1:98,6:32:104:0.058:2	0/1:130,7:31:138:0.051:2
chr1	46073618	rs200936475	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:112,10:28:122:0.082:2	0/1:66,7:27:73:0.096:2	./.	0/1:160,12:27:172:0.070:2	0/1:104,16:30:120:0.133:2	0/1:133,12:26:145:0.083:2	0/1:146,23:30:169:0.136:2	0/1:177,15:28:192:0.078:2	0/1:124,17:29:141:0.121:2	0/1:123,15:28:138:0.109:2	0/1:146,18:27:164:0.110:2
chr1	46073697	rs200497808	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:133,7:28:140:0.050:2	0/1:63,10:28:73:0.137:2	./.	0/1:138,15:29:154:0.098:2	0/1:118,23:28:141:0.163:2	0/1:143,21:28:164:0.128:2	0/1:137,20:29:157:0.127:2	0/1:147,16:26:163:0.098:2	0/1:146,24:28:170:0.141:2	0/1:144,17:28:161:0.106:2	0/1:134,23:29:157:0.146:2
chr1	46073720	.	A	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:58,5:31:63:0.079:2	./.	0/1:123,4:32:127:0.031:2	0/1:115,9:29:124:0.073:2	0/1:130,9:30:139:0.065:2	./.	0/1:151,6:29:157:0.038:2	0/1:141,11:30:152:0.072:2	0/1:138,4:32:142:0.028:2	0/1:126,9:30:135:0.067:2
chr1	46078854	rs2230658	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,12:30:44:0.273:2	0/1:19,4:30:23:0.174:2	./.	0/1:0,28:29:28:1.00:2	0/1:0,9:31:9:1.00:2	0/1:20,14:29:34:0.412:2	./.	0/1:19,10:28:29:0.345:2	0/1:0,22:30:22:1.00:2	0/1:0,30:28:30:1.00:2	./.
chr1	46078884	rs2230659	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,12:32:51:0.235:2	0/1:22,5:32:27:0.185:2	0/1:4,4:32:8:0.500:2	0/1:0,47:33:47:1.00:2	0/1:0,16:32:16:1.00:2	0/1:32,26:32:58:0.448:2	./.	0/1:22,17:33:39:0.436:2	0/1:0,38:33:38:1.00:2	0/1:0,47:32:47:1.00:2	./.
chr1	46080819	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:33:143:0.028:2	./.
chr1	46080996	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:32:88:0.045:2	./.	./.
chr1	46082387	rs200577640	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,71:28:145:0.490:2
chr1	46086077	rs3014246	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,11:31:25:0.440:2	0/1:11,5:29:16:0.313:2	./.	0/1:1,32:30:33:0.970:2	0/1:0,21:30:21:1.00:2	0/1:4,12:30:17:0.750:2	./.	0/1:16,7:32:23:0.304:2	0/1:0,18:31:18:1.00:2	0/1:0,25:29:25:1.00:2	./.
chr1	46086664	rs374329461	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,43:31:72:0.597:2	0/1:26,26:31:52:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	46087577	rs3014242	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,17:32:29:0.586:2	0/1:17,4:31:21:0.190:2	./.	0/1:0,36:32:36:1.00:2	0/1:0,28:32:28:1.00:2	0/1:22,13:32:35:0.371:2	./.	0/1:28,22:32:50:0.440:2	0/1:0,42:33:42:1.00:2	0/1:0,23:33:23:1.00:2	./.
chr1	46094027	rs1250	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,7:31:27:0.259:2	0/1:11,7:32:18:0.389:2	./.	./.	./.	0/1:22,17:32:39:0.436:2	0/1:0,43:33:43:1.00:2	0/1:37,19:33:56:0.339:2	./.	./.	0/1:0,66:32:66:1.00:2
chr1	46095272	rs1135812	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,11:33:13:0.846:2	./.	./.	0/1:72,73:32:145:0.503:2	0/1:0,103:32:103:1.00:2	0/1:77,75:33:152:0.493:2	./.	./.	0/1:2,124:33:126:0.984:2
chr1	46106052	rs36067922	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,58:30:148:0.392:2	./.	./.	./.	./.	./.
chr1	46108125	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,4:33:48:0.083:2	./.	./.	./.	./.	./.	./.	./.
chr1	46195375	rs28375469	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,5:33:14:0.357:2	./.	./.	0/1:35,47:33:82:0.573:2	0/1:2,53:34:55:0.964:2	0/1:49,42:33:91:0.462:2	./.	./.	0/1:1,125:34:126:0.992:2
chr1	46290105	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:32:59:0.068:2	./.	./.
chr1	46383199	rs183642849	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,44:32:91:0.484:2	./.	./.	./.	./.	./.	./.	./.
chr1	46476570	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:30:7:0.857:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	46476587	rs11211247	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:33:33:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,38:32:38:1.00:2	./.	0/1:0,33:32:33:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,37:32:37:1.00:2	0/1:23,25:33:48:0.521:2	0/1:18,23:32:41:0.561:2	0/1:0,48:32:48:1.00:2
chr1	46488600	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:33:136:0.029:2	./.
chr1	46493460	rs1707336	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,27:32:66:0.409:2	0/1:29,15:32:44:0.341:2	0/1:6,6:34:12:0.500:2	0/1:0,80:33:80:1.00:2	./.	./.	./.	0/1:52,34:32:86:0.395:2	0/1:57,59:33:116:0.509:2	0/1:47,37:33:84:0.440:2	./.
chr1	46495155	rs142312565	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,47:30:114:0.412:2	./.	./.	./.	./.	./.
chr1	46496709	rs925524	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,34:27:65:0.523:2	0/1:19,20:28:39:0.513:2	0/1:7,5:30:12:0.417:2	0/1:0,99:28:99:1.00:2	0/1:0,123:28:123:1.00:2	./.	./.	0/1:68,63:29:131:0.481:2	0/1:0,87:30:87:1.00:2	0/1:0,72:28:72:1.00:2	./.
chr1	46497964	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,4:29:15:0.267:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	46498375	rs1622208	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,48:32:100:0.480:2	0/1:35,30:32:65:0.462:2	0/1:5,8:32:13:0.615:2	0/1:0,153:32:153:1.00:2	0/1:1,168:32:170:0.994:2	0/1:91,91:31:182:0.500:2	./.	0/1:84,104:32:188:0.553:2	0/1:2,163:33:165:0.988:2	0/1:0,113:31:113:1.00:2	./.
chr1	46499557	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:32:177:0.023:2
chr1	46500613	rs17855317	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,125:32:128:0.977:2	./.	./.	./.	0/1:60,62:32:122:0.508:2	0/1:45,41:32:86:0.477:2	./.
chr1	46500993	rs1052610	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,29:32:49:0.592:2	./.	./.	./.	./.	./.	0/1:17,23:30:40:0.575:2	./.
chr1	46501270	rs36097855	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,33:31:70:0.471:2	./.	./.
chr1	46501359	rs34070850	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,20:32:37:0.541:2	./.
chr1	46509396	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:33:90:0.044:2	./.
chr1	46521517	rs785468	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,62:30:144:0.434:2	0/1:60,47:31:107:0.439:2	0/1:18,7:30:25:0.280:2	0/1:4,108:30:113:0.964:2	0/1:4,105:29:109:0.963:2	./.	./.	0/1:118,61:29:179:0.341:2	0/1:0,176:30:176:1.00:2	0/1:3,127:29:130:0.977:2	./.
chr1	46521559	rs785467	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,51:32:123:0.415:2	0/1:54,45:32:99:0.455:2	0/1:9,7:31:16:0.438:2	0/1:2,99:31:101:0.980:2	0/1:3,73:31:76:0.961:2	0/1:97,69:31:166:0.416:2	./.	0/1:84,49:31:133:0.368:2	0/1:0,138:32:138:1.00:2	0/1:2,112:31:115:0.982:2	./.
chr1	46546364	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,6:33:87:0.069:2	./.
chr1	46655158	rs6659553	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:32:35:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,3:33:3:1.00:2	0/1:2,43:32:45:0.956:2	0/1:0,24:32:24:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,31:32:31:1.00:2	0/1:2,40:31:42:0.952:2
chr1	46660295	rs2292487	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,14:32:14:1.00:2	./.	./.	0/1:0,129:32:129:1.00:2	./.	./.	0/1:83,59:32:143:0.415:2	0/1:70,58:32:128:0.453:2	0/1:1,135:32:136:0.993:2
chr1	46669276	rs62620991	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,9:33:24:0.375:2	0/1:7,5:32:12:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	46743770	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:123,4:31:127:0.031:2	./.	./.	./.	./.	./.	./.
chr1	46743900	rs1048771	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,41:31:86:0.477:2
chr1	46746164	rs11542623	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,42:32:101:0.416:2
chr1	46774783	rs41292543	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,60:32:126:0.476:2
chr1	46775912	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:30:129:0.031:2	./.	./.	./.
chr1	46782192	rs17102133	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,52:34:119:0.437:2	./.	./.
chr1	46782281	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:33:193:0.026:2	./.	./.
chr1	46806550	rs41293277	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:34,20:32:54:0.370:2	0/1:8,21:31:29:0.724:2	./.	./.	0/1:0,88:30:88:1.00:2	./.	./.	0/1:77,62:31:140:0.446:2	./.	./.	./.
chr1	46810530	rs3737744	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:80,70:33:151:0.467:2	0/1:61,60:32:121:0.496:2	./.	0/1:99,95:33:194:0.490:2	./.	./.	0/1:89,106:32:195:0.544:2	0/1:121,77:32:198:0.389:2	0/1:0,177:33:177:1.00:2	0/1:54,87:31:141:0.617:2	./.
chr1	46810670	rs17361763	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:67,51:33:118:0.432:2	0/1:36,28:33:64:0.438:2	./.	./.	0/1:2,164:31:166:0.988:2	./.	./.	0/1:89,74:33:163:0.454:2	./.	./.	./.
chr1	46827456	rs9865	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,97:33:183:0.530:2
chr1	46827485	rs1053624	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:91,78:30:169:0.462:2	0/1:46,39:32:85:0.459:2	./.	0/1:134,6:30:140:0.043:2	0/1:1,136:29:137:0.993:2	./.	./.	0/1:89,52:29:141:0.369:2	./.	./.	./.
chr1	46870761	rs324420	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,21:31:21:1.00:2	0/1:69,105:32:174:0.603:2	./.	0/1:54,102:31:156:0.654:2	0/1:98,101:32:199:0.508:2	./.	./.	0/1:63,57:32:120:0.475:2	0/1:55,67:32:122:0.549:2
chr1	46871746	rs41305628	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,26:31:48:0.542:2	./.
chr1	46871986	rs324419	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,109:29:109:1.00:2	0/1:0,57:29:57:1.00:2	0/1:0,21:29:21:1.00:2	0/1:0,138:30:138:1.00:2	0/1:0,180:30:180:1.00:2	0/1:0,149:30:149:1.00:2	0/1:2,147:31:149:0.987:2	0/1:1,170:30:171:0.994:2	0/1:2,126:31:128:0.984:2	0/1:0,99:31:99:1.00:2	0/1:0,78:30:78:1.00:2
chr1	46877829	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,88:33:186:0.473:2	./.	./.
chr1	46878769	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:32:71:0.057:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	46976717	rs12045245	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,7:32:11:0.636:2	0/1:33,40:31:73:0.548:2	./.	./.	./.	./.	./.	./.	0/1:46,43:33:89:0.483:2
chr1	46976837	rs1886116	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,38:31:85:0.447:2	0/1:2,88:31:90:0.978:2	./.	./.	./.	./.	0/1:15,43:32:58:0.741:2	./.
chr1	47014905	rs191194559	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,6:31:163:0.037:2	./.	./.	./.
chr1	47016769	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,74:31:171:0.435:2
chr1	47078637	rs4660947	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:26:39:1.00:2	0/1:0,17:26:17:1.00:2	0/1:0,8:30:8:1.00:2	0/1:23,29:28:52:0.558:2	./.	0/1:0,38:28:38:1.00:2	./.	0/1:47,24:27:71:0.338:2	0/1:0,55:29:55:1.00:2	0/1:23,14:26:37:0.378:2	0/1:12,20:27:32:0.625:2
chr1	47080665	rs11211328	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,25:30:25:1.00:2	0/1:0,31:31:31:1.00:2	./.	0/1:22,17:31:39:0.436:2	./.	0/1:26,10:31:36:0.278:2	./.	0/1:30,14:31:44:0.318:2	0/1:24,21:33:45:0.467:2	0/1:18,11:32:29:0.379:2	0/1:26,24:31:50:0.480:2
chr1	47080679	rs6671527	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:32:23:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,9:32:9:1.00:2	0/1:29,17:31:46:0.370:2	./.	0/1:0,35:31:35:1.00:2	./.	0/1:34,14:32:48:0.292:2	0/1:0,35:33:35:1.00:2	0/1:20,13:33:33:0.394:2	0/1:28,23:32:51:0.451:2
chr1	47080741	rs12029680	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,26:31:26:1.00:2	./.	0/1:27,30:31:57:0.526:2	./.	0/1:0,62:31:62:1.00:2	./.	0/1:37,15:31:52:0.288:2	0/1:27,31:32:58:0.534:2	0/1:26,19:31:45:0.422:2	0/1:31,30:30:61:0.492:2
chr1	47133811	rs11211337	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,4:29:4:1.00:2	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2
chr1	47138819	rs614486	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,24:30:54:0.444:2	0/1:17,16:32:33:0.485:2	./.	./.	./.	0/1:45,45:32:90:0.500:2	./.	0/1:42,42:31:84:0.500:2	0/1:0,76:33:76:1.00:2	0/1:19,27:32:46:0.587:2	0/1:2,66:31:68:0.971:2
chr1	47139103	rs1025806	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:18,18:32:36:0.500:2	0/1:13,13:32:26:0.500:2	./.	./.	./.	./.	./.	0/1:46,27:32:73:0.370:2	0/1:0,53:32:54:1.00:2	0/1:18,21:32:39:0.538:2	0/1:0,54:32:54:1.00:2
chr1	47154035	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:32:196:0.026:2	./.
chr1	47183605	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,22:29:55:0.400:2	./.	./.	./.	./.	./.
chr1	47279175	rs4646487	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.	0/1:41,35:31:76:0.461:2	./.	./.	./.	0/1:38,51:33:89:0.573:2	./.	./.
chr1	47279898	rs45446505	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,19:29:45:0.422:2	./.	./.	./.	./.	./.
chr1	47395973	rs1126743	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:32:87:1.00:2	0/1:0,69:32:69:1.00:2	0/1:12,7:31:19:0.368:2	0/1:1,109:31:110:0.991:2	0/1:80,61:31:141:0.433:2	0/1:1,107:31:108:0.991:2	0/1:3,104:31:107:0.972:2	0/1:2,120:31:122:0.984:2	0/1:59,55:32:114:0.482:2	0/1:0,101:32:101:1.00:2	0/1:77,65:31:142:0.458:2
chr1	47398496	rs1126742	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:34:11:0.364:2	./.	0/1:74,34:32:108:0.315:2	./.	./.	./.	0/1:64,32:32:96:0.333:2	./.	0/1:59,46:31:105:0.438:2
chr1	47399629	rs150346297	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,58:32:141:0.411:2	./.	./.
chr1	47399879	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:32:183:0.022:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	47399967	rs28451040	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,11:30:38:0.289:2	./.	0/1:127,51:31:178:0.287:2	./.	0/1:181,4:32:185:0.022:2	0/1:163,31:31:194:0.160:2	0/1:116,72:32:188:0.383:2	0/1:144,39:31:183:0.213:2	0/1:105,68:32:173:0.393:2
chr1	47400195	rs41300339	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,9:29:143:0.063:2	./.	./.
chr1	47401277	rs62618709	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:189,7:31:196:0.036:2	0/1:185,8:30:193:0.041:2	./.	./.	0/1:189,6:32:195:0.031:2	./.	./.
chr1	47402947	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:33:98:0.041:2	./.	./.	./.	./.	./.
chr1	47546321	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,39:32:147:0.265:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	47548113	rs200076743	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:180,17:30:197:0.086:2	0/1:183,10:31:193:0.052:2	./.	0/1:183,9:30:192:0.047:2	0/1:189,6:31:195:0.031:2	0/1:191,5:28:196:0.026:2	0/1:190,10:29:200:0.050:2	0/1:185,13:29:198:0.066:2	0/1:187,7:30:194:0.036:2	0/1:182,13:30:195:0.067:2	0/1:184,5:31:190:0.026:2
chr1	47560305	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,4:32:48:0.083:2	./.	./.	./.	./.	./.	./.
chr1	47571830	rs151236717	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,102:32:190:0.537:2	./.	./.	./.	./.	./.
chr1	47571862	rs138601503	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,51:33:174:0.293:2	./.	./.	./.	./.	./.
chr1	47571902	rs4926802	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:117,41:27:158:0.259:2	0/1:102,38:27:140:0.271:2	./.	0/1:94,55:27:149:0.369:2	0/1:95,51:29:146:0.349:2	0/1:87,52:29:139:0.374:2	./.
chr1	47571905	rs28463559	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:115,41:30:156:0.263:2	0/1:103,37:30:140:0.264:2	./.	0/1:94,54:30:148:0.365:2	0/1:98,50:32:148:0.338:2	0/1:86,51:30:137:0.372:2	./.
chr1	47581186	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:30:123:0.033:2	./.	./.	./.
chr1	47582353	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:34:174:0.023:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	47603256	rs141897799	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,76:29:141:0.539:2	./.	./.	./.	./.	./.
chr1	47603312	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:33:112:0.036:2	./.	./.	./.	./.	./.
chr1	47607281	rs12564525	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,23:31:67:0.343:2	0/1:3,81:31:84:0.964:2	0/1:93,4:33:97:0.041:2	./.	0/1:62,63:33:125:0.504:2	./.	./.
chr1	47607785	rs2056900	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,48:32:116:0.414:2	0/1:49,41:32:90:0.456:2	./.	./.	0/1:42,55:33:97:0.567:2	./.	./.
chr1	47607827	rs147010308	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,62:30:138:0.449:2	./.	./.	./.	./.	./.
chr1	47607851	rs2056899	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:49,46:31:95:0.484:2	0/1:19,33:32:52:0.635:2	0/1:6,5:27:11:0.455:2	./.	0/1:99,79:31:178:0.444:2	0/1:1,144:30:145:0.993:2	./.	0/1:0,186:31:186:1.00:2	0/1:0,162:32:162:1.00:2	0/1:38,66:32:104:0.635:2	0/1:0,131:31:131:1.00:2
chr1	47608983	rs113777592	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:118,75:31:193:0.389:2	0/1:118,78:31:196:0.398:2	./.	./.	0/1:110,78:31:188:0.415:2	./.	./.
chr1	47609477	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:33:156:0.026:2	./.	./.
chr1	47609489	rs10789501	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,77:30:180:0.428:2	0/1:3,178:30:182:0.983:2	./.	0/1:94,97:30:191:0.508:2	0/1:2,152:31:154:0.987:2	0/1:88,80:31:168:0.476:2	./.
chr1	47610065	rs149718343	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,48:29:113:0.425:2	./.	./.	./.	0/1:98,83:31:181:0.459:2	./.	./.
chr1	47610102	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,5:32:109:0.046:2	./.	./.	./.	./.	./.	./.	./.	0/1:181,5:32:186:0.027:2	0/1:183,9:34:192:0.047:2
chr1	47610117	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:182,8:32:190:0.042:2	0/1:116,5:32:121:0.041:2	./.	0/1:186,6:28:192:0.031:2	0/1:141,7:30:148:0.047:2	0/1:187,6:31:193:0.031:2	0/1:185,12:31:197:0.061:2	0/1:183,14:31:197:0.071:2	0/1:176,16:32:192:0.083:2	0/1:183,9:31:192:0.047:2	0/1:185,7:31:192:0.036:2
chr1	47610293	rs968322	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,7:32:64:0.109:2	./.	0/1:160,25:31:185:0.135:2	./.	./.	0/1:141,57:32:198:0.288:2	0/1:108,82:32:190:0.432:2	0/1:112,63:31:175:0.360:2	0/1:155,21:31:176:0.119:2
chr1	47611598	rs2405599	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,67:33:142:0.472:2	0/1:0,141:33:141:1.00:2	./.	./.	0/1:96,68:34:164:0.415:2	./.	./.
chr1	47614434	rs4926600	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,61:30:156:0.391:2	./.	./.	./.	0/1:75,57:31:132:0.432:2	./.	./.
chr1	47653053	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,5:28:190:0.026:2	./.	./.	./.
chr1	47655599	rs11801079	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,9:31:11:0.818:2	./.	./.	./.	./.	./.
chr1	47685455	rs927462	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,10:31:10:1.00:2	0/1:0,2:33:2:1.00:2	./.	0/1:0,2:34:2:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,15:29:15:1.00:2	./.	0/1:0,6:31:6:1.00:2	0/1:0,4:35:4:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,2:32:2:1.00:2
chr1	47685569	rs144117146	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:28:3:1.00:2	./.	./.
chr1	47716889	rs146387723	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,41:31:83:0.494:2	./.	./.	./.	./.	./.
chr1	47717189	rs2758735	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,42:30:83:0.506:2	0/1:32,36:28:69:0.529:2	0/1:4,18:29:22:0.818:2	0/1:47,52:29:99:0.525:2	0/1:0,85:29:85:1.00:2	0/1:48,69:29:117:0.590:2	0/1:2,75:29:77:0.974:2	0/1:67,41:29:108:0.380:2	0/1:88,59:30:147:0.401:2	0/1:49,34:28:83:0.410:2	0/1:72,55:29:127:0.433:2
chr1	47717390	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:34:128:0.031:2	./.	./.
chr1	47726087	rs13376679	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:95,103:30:198:0.520:2	0/1:72,63:30:135:0.467:2	./.	0/1:125,74:30:199:0.372:2	./.	0/1:125,72:30:197:0.365:2	./.	0/1:109,85:30:194:0.438:2	./.	./.	0/1:92,95:29:187:0.508:2
chr1	47746678	rs10789505	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,9:30:26:0.346:2	./.	./.	./.	./.	./.	0/1:90,100:31:190:0.526:2	0/1:63,78:30:141:0.553:2	./.
chr1	47767914	rs3125630	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:40,27:31:67:0.403:2	0/1:24,12:31:36:0.333:2	./.	0/1:40,29:30:69:0.420:2	./.	0/1:40,18:29:58:0.310:2	./.	0/1:37,20:30:58:0.351:2	0/1:37,28:31:65:0.431:2	0/1:29,40:30:69:0.580:2	0/1:24,19:30:43:0.442:2
chr1	47799639	rs7543016	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:11,8:31:19:0.421:2	./.	./.	0/1:17,20:30:37:0.541:2	./.	0/1:12,18:29:30:0.600:2	./.	0/1:16,15:30:31:0.484:2	0/1:13,8:29:21:0.381:2	0/1:7,10:31:17:0.588:2	0/1:3,5:29:8:0.625:2
chr1	47834209	rs35687416	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,15:31:15:1.00:2	./.	0/1:46,24:31:70:0.343:2	./.	./.	0/1:55,79:31:134:0.590:2	./.	./.	./.
chr1	47842431	rs3125648	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:33:49:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,36:33:36:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,80:33:80:1.00:2
chr1	47882497	rs34082359	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	47883019	rs6666370	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,5:29:5:1.00:2	./.	./.	0/1:0,3:32:3:1.00:2	0/1:0,2:30:2:1.00:2	./.	0/1:0,6:30:6:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,2:30:2:1.00:2
chr1	47883024	rs2820969	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,5:26:5:1.00:2	./.	./.	0/1:0,5:34:5:1.00:2	0/1:0,3:33:3:1.00:2	0/1:7,3:29:11:0.300:2	0/1:0,7:29:7:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,3:32:3:1.00:2
chr1	47904203	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,5:29:128:0.039:2	./.	./.	./.	./.
chr1	47904218	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,5:31:157:0.032:2	./.	./.	./.	./.
chr1	47905770	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:26,8:22:34:0.235:2	./.	./.	./.	0/1:22,6:17:28:0.214:2	./.	./.	0/1:24,9:20:33:0.273:2	0/1:34,6:19:40:0.150:2	0/1:44,9:23:53:0.170:2	0/1:45,8:22:53:0.151:2
chr1	47906114	rs72686276	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,9:28:24:0.375:2	./.	./.	./.	./.	0/1:7,13:29:20:0.650:2	./.
chr1	47906338	rs2820966	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:32:56:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,5:28:5:1.00:2	0/1:1,60:31:61:0.984:2	0/1:0,40:32:40:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,63:32:63:1.00:2
chr1	48695081	rs212989	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:96,74:31:170:0.435:2	0/1:56,55:32:111:0.495:2	./.	./.	0/1:109,80:31:189:0.423:2	0/1:96,88:31:184:0.478:2	0/1:188,4:33:192:0.021:2	./.	./.	./.	./.
chr1	48697733	rs212991	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,130:33:130:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,173:33:173:1.00:2	0/1:1,149:33:150:0.993:2	0/1:0,173:32:173:1.00:2	0/1:0,157:32:157:1.00:2	0/1:0,162:33:162:1.00:2	0/1:0,169:33:169:1.00:2	0/1:1,148:33:149:0.993:2	0/1:0,127:32:127:1.00:2
chr1	48697751	rs61997212	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,94:31:179:0.525:2	./.	./.	./.	./.
chr1	48708228	rs850763	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:30,32:29:62:0.516:2	0/1:18,15:29:33:0.455:2	./.	./.	0/1:54,51:29:105:0.486:2	0/1:36,33:29:69:0.478:2	./.	./.	./.	./.	./.
chr1	48708250	rs78427303	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.	./.	./.	0/1:32,48:30:80:0.600:2	0/1:1,91:31:92:0.989:2	0/1:28,37:29:65:0.569:2	./.	./.
chr1	48708278	rs75538709	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:30:5:0.600:2	./.	./.	./.	0/1:22,39:31:61:0.639:2	0/1:2,70:31:72:0.972:2	0/1:19,30:31:49:0.612:2	./.	./.
chr1	48713206	rs7535096	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,77:32:154:0.500:2	0/1:89,80:32:169:0.473:2	./.	./.	./.	./.	./.
chr1	48764419	rs1056042	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,78:31:164:0.476:2	0/1:58,41:31:99:0.414:2	./.	./.	./.	0/1:106,75:30:181:0.414:2	0/1:7,131:31:138:0.949:2	0/1:96,77:31:173:0.445:2	0/1:86,92:31:178:0.517:2	0/1:82,77:31:160:0.484:2	./.
chr1	48825355	rs1338314	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,15:32:45:0.333:2
chr1	48937691	rs2275309	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,7:30:11:0.636:2	0/1:0,4:29:4:1.00:2	./.	./.	./.	./.
chr1	49224584	rs1128934	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,15:33:15:1.00:2	0/1:0,10:31:10:1.00:2	./.	0/1:0,15:31:15:1.00:2	0/1:0,5:31:5:1.00:2	0/1:3,10:32:13:0.769:2	0/1:0,10:32:10:1.00:2	0/1:1,16:31:17:0.941:2	0/1:8,3:34:11:0.273:2	0/1:0,8:33:8:1.00:2	0/1:0,19:32:19:1.00:2
chr1	49242483	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,29:32:63:0.460:2	./.	./.	./.
chr1	49511311	rs72895659	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,49:30:115:0.426:2	./.	./.	./.	./.	./.
chr1	49511424	rs3934240	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,38:32:77:0.494:2	./.
chr1	50661411	rs2480683	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:30:40:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,47:30:47:1.00:2	0/1:2,32:30:34:0.941:2	0/1:0,66:31:66:1.00:2
chr1	50666515	rs2494876	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,63:31:65:0.969:2	0/1:0,41:32:41:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,95:31:95:1.00:2	0/1:1,97:31:98:0.990:2	0/1:0,114:31:114:1.00:2	0/1:0,90:31:90:1.00:2	0/1:0,120:30:120:1.00:2	./.	0/1:0,100:30:100:1.00:2	0/1:0,92:30:92:1.00:2
chr1	51121198	rs11205753	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,9:31:19:0.474:2	0/1:10,11:32:21:0.524:2	./.	./.	./.	./.	./.
chr1	51439777	rs1043141	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,34:31:69:0.493:2	./.	./.	./.	./.
chr1	51611451	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,3:32:44:0.068:2	./.	./.	./.	./.
chr1	51735729	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:32:144:0.028:2	./.	./.	./.	./.
chr1	51755769	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:31:119:0.034:2	./.
chr1	51760147	rs41287288	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,49:32:88:0.557:2	./.	./.	./.
chr1	51767352	rs41287290	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:1,76:31:77:0.987:2	0/1:0,29:32:29:1.00:2	0/1:12,4:31:16:0.250:2	./.	./.	./.	./.	./.	./.	./.	0/1:50,47:32:97:0.485:2
chr1	51767923	rs201705883	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:18,5:19:23:0.217:2	./.	./.	0/1:19,8:22:27:0.296:2	./.	./.	0/1:12,4:21:16:0.250:2	0/1:32,7:23:39:0.179:2	./.	./.	./.
chr1	51787853	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,8:21:34:0.235:2	./.	./.	./.	./.	./.	./.	./.	0/1:29,6:24:35:0.171:2	./.
chr1	51787862	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,9:23:30:0.300:2	0/1:20,4:24:24:0.167:2	./.	./.	./.
chr1	51826921	rs17567	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,56:32:99:0.566:2	0/1:70,82:33:152:0.539:2	0/1:2,119:32:121:0.983:2	0/1:76,66:31:142:0.465:2
chr1	51873951	rs1065754	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,9:32:22:0.409:2	0/1:86,78:31:164:0.476:2	0/1:87,75:31:162:0.463:2	0/1:71,52:31:123:0.423:2	./.	0/1:0,154:32:154:1.00:2	0/1:82,47:33:129:0.364:2	0/1:0,129:32:129:1.00:2	0/1:89,77:32:166:0.464:2
chr1	51913766	rs116386363	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,53:31:100:0.530:2	./.	./.	./.	./.
chr1	52082881	rs143626823	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,81:32:163:0.497:2	./.	./.
chr1	52231560	rs61739207	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,72:32:190:0.379:2
chr1	52264064	rs1770791	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.	0/1:28,31:32:59:0.525:2	./.	./.	./.	0/1:53,49:33:102:0.480:2
chr1	52266242	rs8375	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,117:33:117:1.00:2	0/1:0,99:32:99:1.00:2	0/1:13,14:33:27:0.519:2	0/1:104,74:32:178:0.416:2	./.	0/1:0,133:32:133:1.00:2	./.	./.	0/1:81,94:33:175:0.537:2	0/1:0,131:33:131:1.00:2	0/1:96,98:33:194:0.505:2
chr1	52266350	rs2273198	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,43:32:86:0.500:2
chr1	52290984	rs11205896	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,110:33:110:1.00:2	0/1:2,61:32:63:0.968:2	0/1:5,8:31:13:0.615:2	0/1:72,58:33:130:0.446:2	./.	0/1:2,106:32:108:0.981:2	0/1:54,33:32:87:0.379:2	./.	./.	0/1:0,112:32:113:1.00:2	0/1:82,104:32:186:0.559:2
chr1	52299790	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,4:32:72:0.056:2	./.	./.	./.	./.	./.	./.
chr1	52306027	rs114314660	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,98:31:181:0.541:2	./.	./.	./.	./.	./.
chr1	52344245	rs72901974	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,19:29:68:0.279:2	./.	./.	./.	./.
chr1	52385656	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,17:31:133:0.128:2	./.	./.	./.	./.
chr1	52399021	rs2230325	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,37:29:87:0.425:2
chr1	52498370	rs2809917	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,33:29:77:0.429:2	0/1:48,34:30:82:0.415:2	./.	./.	./.
chr1	52498861	rs2783175	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,22:31:39:0.564:2	./.	./.	./.
chr1	52499437	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:30:59:0.068:2	./.
chr1	52499489	rs2809916	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,30:30:77:0.390:2	./.	./.	./.
chr1	52520747	rs190576327	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,83:30:145:0.572:2	./.	./.	./.	./.	./.	./.
chr1	52703491	rs35385323	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,28:31:77:0.364:2	./.	./.	./.	./.
chr1	52761590	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:31:135:0.030:2	./.	./.	./.
chr1	52798467	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,4:30:44:0.091:2	./.	./.	./.	./.	./.	./.
chr1	52805850	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,4:32:83:0.048:2	./.	./.	./.	./.	./.	./.
chr1	52805869	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,4:33:111:0.036:2	0/1:84,4:31:88:0.045:2	./.	./.	./.	./.	./.	./.
chr1	52805888	rs373520372	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,4:29:87:0.046:2	./.	./.	./.	./.	./.	./.
chr1	52811752	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:32:178:0.022:2	./.	./.	./.
chr1	52811806	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:33:161:0.025:2	./.	./.	./.	./.
chr1	52828384	rs11555349	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,33:30:62:0.532:2	./.	./.	./.	./.
chr1	52867839	rs3087473	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,23:31:75:0.307:2	./.
chr1	52871361	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:31:198:0.025:2	./.	./.	./.
chr1	52871399	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,5:31:185:0.027:2	./.	./.	./.
chr1	52991638	rs12123698	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:1,121:32:122:0.992:2	0/1:0,76:32:76:1.00:2	./.	./.	./.	./.	0/1:49,41:32:90:0.456:2	0/1:75,64:32:139:0.460:2	0/1:66,80:34:146:0.548:2	0/1:0,91:33:91:1.00:2	0/1:90,67:32:157:0.427:2
chr1	53068093	rs11205977	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:34:6:0.500:2	./.	./.
chr1	53072454	rs1970951	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:32:74:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,97:32:97:1.00:2	0/1:50,67:32:117:0.573:2	0/1:41,57:31:98:0.582:2	0/1:1,110:32:111:0.991:2	0/1:0,128:32:128:1.00:2	0/1:1,87:33:88:0.989:2	0/1:0,86:32:86:1.00:2	0/1:0,71:31:71:1.00:2
chr1	53099276	rs202139774	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,51:30:100:0.510:2	./.	./.
chr1	53153432	rs443751	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,183:32:186:0.984:2	0/1:3,113:32:116:0.974:2	0/1:20,25:33:45:0.556:2	0/1:109,75:33:185:0.408:2	0/1:103,90:33:193:0.466:2	./.	0/1:110,82:33:192:0.427:2	0/1:6,180:33:186:0.968:2	./.	./.	./.
chr1	53158524	rs200725979	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,13:23:43:0.302:2	./.	./.	0/1:25,30:20:55:0.545:2	0/1:30,17:18:47:0.362:2	0/1:31,21:20:52:0.404:2	0/1:34,29:17:63:0.460:2	0/1:42,29:16:71:0.408:2	0/1:24,17:12:41:0.415:2	0/1:21,17:19:38:0.447:2	0/1:26,23:19:49:0.469:2
chr1	53250650	rs6588443	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,7:31:11:0.636:2	0/1:56,41:31:97:0.423:2	0/1:29,38:31:67:0.567:2	0/1:2,66:31:68:0.971:2	0/1:47,66:32:113:0.584:2	./.	./.	0/1:0,89:32:89:1.00:2	0/1:0,77:31:77:1.00:2
chr1	53287214	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr1	53320274	rs480299	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,91:31:91:1.00:2	0/1:3,38:32:41:0.927:2	0/1:0,10:30:10:1.00:2	0/1:48,55:31:103:0.534:2	0/1:36,24:32:60:0.400:2	0/1:43,32:31:75:0.427:2	0/1:40,39:31:79:0.494:2	0/1:1,92:31:93:0.989:2	0/1:0,112:32:112:1.00:2	./.	0/1:56,57:31:113:0.504:2
chr1	53326524	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,30:31:63:0.476:2	./.	./.	./.
chr1	53333392	rs79762797	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.	./.	0/1:35,23:31:58:0.397:2	./.	./.	./.	./.	./.
chr1	53373560	rs111794011	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,19:32:50:0.380:2	./.
chr1	53393083	rs147697594	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,4:32:76:0.053:2	./.	./.	./.	./.	./.	./.
chr1	53420424	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:32:184:0.022:2
chr1	53442376	rs41294530	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,21:32:32:0.656:2	./.	./.	0/1:79,77:31:156:0.494:2	./.	./.	./.	./.	./.
chr1	53527948	rs7513730	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,3:33:8:0.375:2
chr1	53532545	rs149127843	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,47:29:50:0.940:2	0/1:1,25:30:26:0.962:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	53535478	rs1288386	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,74:31:74:1.00:2	0/1:50,39:30:89:0.438:2	0/1:38,39:31:77:0.506:2	0/1:31,35:30:66:0.530:2	./.	0/1:50,40:32:90:0.444:2	0/1:0,53:31:53:1.00:2	0/1:29,28:32:57:0.491:2
chr1	53537266	rs1769316	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,109:30:109:1.00:2	0/1:49,55:30:104:0.529:2	0/1:58,67:30:125:0.536:2	0/1:66,41:31:107:0.383:2	./.	0/1:51,52:31:103:0.505:2	0/1:0,71:30:71:1.00:2	0/1:0,78:31:78:1.00:2
chr1	53544289	rs11206087	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,13:28:31:0.419:2	./.
chr1	53544439	rs1288388	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:30:32:1.00:2	0/1:1,18:30:19:0.947:2	0/1:3,3:32:6:0.500:2	0/1:2,41:30:43:0.953:2	0/1:25,33:29:58:0.569:2	0/1:23,12:29:35:0.343:2	0/1:25,12:30:37:0.324:2	./.	0/1:25,17:30:42:0.405:2	0/1:12,15:31:27:0.556:2	0/1:6,10:31:16:0.625:2
chr1	53544513	rs12567021	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,19:30:25:0.760:2	./.	./.	./.	./.	./.	./.
chr1	53544578	rs11206088	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:18,3:34:21:0.143:2	./.	./.	./.	0/1:40,21:31:61:0.344:2	./.	0/1:24,12:33:36:0.333:2	0/1:0,46:32:46:1.00:2	0/1:6,23:33:29:0.793:2	./.	./.
chr1	53544597	rs1288389	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,11:29:11:1.00:2	0/1:0,8:28:8:1.00:2	0/1:5,3:30:8:0.375:2	0/1:2,44:29:46:0.957:2	0/1:0,47:29:47:1.00:2	0/1:22,30:29:52:0.577:2	0/1:0,31:31:31:1.00:2	0/1:0,33:31:33:1.00:2	0/1:1,19:31:20:0.950:2	0/1:12,17:27:29:0.586:2	0/1:15,9:31:24:0.375:2
chr1	53544666	rs61999355	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:30:7:0.571:2
chr1	53544682	rs368759459	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:28:10:0.300:2	./.	./.	./.
chr1	53547800	rs6687909	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,15:32:51:0.294:2
chr1	53547815	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,3:33:45:0.067:2	./.	./.	./.	./.	./.
chr1	53553702	rs1288400	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,183:29:183:1.00:2	0/1:0,87:28:87:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,188:29:188:1.00:2	0/1:0,180:29:180:1.00:2	0/1:0,181:30:182:1.00:2	0/1:0,184:29:184:1.00:2	0/1:0,183:29:183:1.00:2	0/1:0,186:30:186:1.00:2	0/1:0,182:29:183:1.00:2	0/1:0,170:29:170:1.00:2
chr1	53553754	rs1288401	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,158:30:160:0.988:2	0/1:0,103:29:103:1.00:2	0/1:20,12:30:32:0.375:2	0/1:4,138:29:142:0.972:2	0/1:83,59:29:142:0.415:2	0/1:87,73:29:160:0.456:2	0/1:79,40:30:119:0.336:2	./.	0/1:95,61:30:156:0.391:2	0/1:78,79:29:157:0.503:2	0/1:84,60:29:144:0.417:2
chr1	53558270	rs1288406	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,58:30:59:0.983:2	0/1:0,27:28:27:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,69:30:69:1.00:2	0/1:48,33:29:81:0.407:2	0/1:0,47:28:47:1.00:2	0/1:38,30:29:68:0.441:2	./.	0/1:25,40:30:65:0.615:2	0/1:0,39:29:39:1.00:2	0/1:0,40:28:40:1.00:2
chr1	53558366	rs12129653	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,45:30:66:0.682:2	./.
chr1	53569230	rs114930372	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,13:31:29:0.448:2	./.	./.
chr1	53580505	rs141274422	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:153,4:31:157:0.025:2	./.	./.	./.	./.	./.	./.
chr1	53600072	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,4:29:63:0.063:2	./.	./.	./.	./.	./.	./.
chr1	53600078	rs3737989	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:32,16:29:48:0.333:2	0/1:21,10:30:31:0.323:2	./.	./.	0/1:31,29:29:60:0.483:2	./.	./.	./.	./.	./.	./.
chr1	53676448	rs1799821	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:39,28:32:67:0.418:2	0/1:27,21:31:48:0.438:2	./.	./.	0/1:42,31:31:74:0.425:2	0/1:41,32:30:73:0.438:2	./.	0/1:0,56:31:56:1.00:2	./.	0/1:1,52:31:53:0.981:2	./.
chr1	53679096	rs147953465	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,42:29:108:0.393:2
chr1	53679229	rs1799822	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,14:31:43:0.326:2	./.	./.	./.	0/1:27,17:31:44:0.386:2	./.
chr1	53681699	rs1134688	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,16:30:31:0.516:2	./.	./.	./.	0/1:16,15:29:31:0.484:2	./.
chr1	53683817	rs200743226	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,20:12:181:0.110:2	./.	./.	./.	0/1:105,12:15:117:0.103:2	0/1:137,14:18:153:0.093:2
chr1	53684525	rs436887	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,27:32:69:0.391:2	0/1:31,8:32:39:0.205:2	./.	0/1:56,51:32:108:0.477:2	0/1:0,31:32:31:1.00:2	0/1:43,21:32:64:0.328:2	0/1:26,27:33:53:0.509:2	0/1:0,53:32:53:1.00:2	0/1:45,44:33:89:0.494:2	0/1:0,66:31:66:1.00:2	./.
chr1	53712727	rs5174	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,15:33:28:0.536:2	0/1:5,6:32:11:0.545:2	./.	./.	0/1:15,11:32:26:0.423:2	0/1:32,17:32:49:0.347:2	./.	0/1:0,36:32:36:1.00:2	./.	0/1:0,31:31:31:1.00:2	./.
chr1	53716416	rs3737983	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:66,50:32:116:0.431:2	0/1:36,43:31:79:0.544:2	./.	./.	0/1:72,53:31:125:0.424:2	0/1:91,76:31:167:0.455:2	0/1:124,6:31:130:0.046:2	0/1:1,136:31:137:0.993:2	./.	0/1:0,95:32:95:1.00:2	./.
chr1	53732315	rs2297660	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:52,50:31:102:0.490:2	0/1:25,27:32:52:0.519:2	./.	./.	0/1:62,52:31:114:0.456:2	0/1:58,50:30:108:0.463:2	./.	0/1:2,121:31:123:0.984:2	./.	0/1:0,112:31:112:1.00:2	./.
chr1	53746346	rs201364912	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,8:14:46:0.174:2
chr1	53792651	rs3820198	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,21:32:37:0.568:2	0/1:10,9:32:19:0.474:2	0/1:2,5:32:7:0.714:2	0/1:0,60:32:60:1.00:2	./.	0/1:49,26:31:75:0.347:2	0/1:1,83:32:84:0.988:2	./.	./.	./.	0/1:37,28:32:65:0.431:2
chr1	53927262	rs138758029	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,34:32:58:0.586:2	./.	./.	./.	./.	./.	./.	./.
chr1	53930360	rs61738842	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,12:28:32:0.375:2	0/1:7,7:30:14:0.500:2	0/1:1,6:28:7:0.857:2	0/1:28,25:26:54:0.472:2	./.	./.	0/1:32,27:24:59:0.458:2	./.	./.	./.	./.
chr1	53980367	rs142735388	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,71:32:156:0.455:2	./.	./.	./.	./.	./.
chr1	54060016	rs35227000	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:33:9:1.00:2	0/1:0,5:32:5:1.00:2	./.	./.	0/1:2,3:32:5:0.600:2	./.	./.	./.	./.	0/1:1,3:34:4:0.750:2	./.
chr1	54060101	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:31:57:0.070:2	./.	./.	./.	./.	./.
chr1	54060248	rs4307514	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,35:32:35:1.00:2	0/1:0,16:31:16:1.00:2	./.	./.	0/1:23,13:30:36:0.361:2	0/1:39,12:33:51:0.235:2	0/1:16,12:32:28:0.429:2	./.	./.	0/1:24,20:34:44:0.455:2	./.
chr1	54258880	rs2273139	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,44:31:114:0.386:2	./.	./.	0/1:67,82:32:149:0.550:2	./.	./.
chr1	54387408	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:133,6:30:139:0.043:2	./.	./.	./.	./.	./.	./.
chr1	54432019	rs2294514	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,54:30:92:0.587:2	0/1:63,14:28:77:0.182:2	0/1:68,51:29:119:0.429:2	./.	./.	0/1:51,39:31:90:0.433:2	./.	./.
chr1	54483033	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,3:32:40:0.075:2	./.	./.	./.	./.	./.
chr1	54483752	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:31:75:0.053:2	./.	./.	./.	./.	./.
chr1	54518788	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:30:92:0.043:2	./.	./.	./.	./.
chr1	54605320	rs66812916	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,6:32:67:0.090:2	./.	./.
chr1	54605557	rs138864964	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,31:30:61:0.508:2
chr1	54606804	rs3766465	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,42:32:85:0.494:2	0/1:27,24:33:51:0.471:2	0/1:0,15:33:15:1.00:2	0/1:0,129:32:129:1.00:2	0/1:0,135:32:135:1.00:2	0/1:1,122:32:123:0.992:2	0/1:0,148:33:148:1.00:2	0/1:0,131:32:131:1.00:2	0/1:0,100:33:100:1.00:2	0/1:2,85:33:87:0.977:2	0/1:0,107:32:107:1.00:2
chr1	54606891	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:33:71:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	54607051	rs671103	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,97:31:98:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,118:31:118:1.00:2	0/1:0,151:31:151:1.00:2	0/1:0,108:31:108:1.00:2	0/1:0,156:31:156:1.00:2	0/1:0,126:31:126:1.00:2	0/1:0,142:32:142:1.00:2	0/1:0,108:31:108:1.00:2	0/1:0,112:31:112:1.00:2
chr1	54610389	rs34826914	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,46:32:86:0.535:2	0/1:19,22:31:41:0.537:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	54656440	rs191854671	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,14:32:40:0.350:2	./.	./.	./.	./.
chr1	54661150	rs946448	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:22,15:32:37:0.405:2	0/1:11,15:32:26:0.577:2	0/1:4,3:31:7:0.429:2	./.	./.	./.	./.	0/1:0,56:30:56:1.00:2	./.	./.	0/1:22,22:31:44:0.500:2
chr1	54661234	rs79743819	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,11:31:18:0.611:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	54661254	rs149914770	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,85:32:187:0.455:2	./.	./.	./.
chr1	54661262	rs11544199	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,30:31:57:0.526:2	0/1:18,24:32:42:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	54681920	rs13571	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:107,82:33:189:0.434:2	0/1:74,55:32:129:0.426:2	0/1:0,32:32:32:1.00:2	0/1:111,84:33:195:0.431:2	0/1:127,66:32:193:0.342:2	0/1:0,183:33:183:1.00:2	0/1:3,179:33:182:0.984:2	0/1:3,185:32:188:0.984:2	0/1:1,190:33:191:0.995:2	0/1:0,187:33:187:1.00:2	0/1:105,87:33:192:0.453:2
chr1	54683856	rs15921	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:62,47:31:109:0.431:2	0/1:31,37:31:68:0.544:2	./.	0/1:73,64:32:137:0.467:2	0/1:48,27:32:75:0.360:2	./.	./.	./.	./.	./.	0/1:78,62:33:140:0.443:2
chr1	54683925	rs6621	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,40:33:112:0.357:2
chr1	54686374	rs612711	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,125:32:126:0.992:2	0/1:1,87:32:88:0.989:2	0/1:6,6:33:12:0.500:2	0/1:73,79:32:152:0.520:2	0/1:0,165:31:165:1.00:2	0/1:69,74:31:143:0.517:2	0/1:0,179:31:179:1.00:2	0/1:86,102:31:188:0.543:2	0/1:91,74:33:165:0.448:2	0/1:65,55:32:120:0.458:2	0/1:83,69:32:152:0.454:2
chr1	54686464	rs613158	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:89,63:30:152:0.414:2	0/1:44,48:31:92:0.522:2	./.	0/1:83,87:31:170:0.512:2	0/1:0,147:31:147:1.00:2	./.	0/1:1,159:32:160:0.994:2	0/1:81,98:32:179:0.547:2	./.	./.	0/1:84,76:32:160:0.475:2
chr1	54694487	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:30:102:0.039:2	./.	./.
chr1	54703918	rs41294796	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,16:32:39:0.410:2	./.	./.	./.
chr1	54704510	rs2274662	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,6:32:18:0.333:2	0/1:8,7:33:15:0.467:2	./.	./.	0/1:15,10:30:25:0.400:2	0/1:2,22:32:25:0.917:2	0/1:0,13:33:13:1.00:2	0/1:11,9:32:20:0.450:2	0/1:5,6:31:11:0.545:2	0/1:14,12:32:26:0.462:2	0/1:11,6:32:17:0.353:2
chr1	54704563	rs2274663	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:32:9:0.444:2	0/1:3,6:32:9:0.667:2	./.	./.	0/1:2,8:30:10:0.800:2	0/1:7,6:30:13:0.462:2	./.	./.	./.	./.	0/1:0,14:31:14:1.00:2
chr1	54704567	rs11206312	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,10:28:10:1.00:2	0/1:0,9:28:9:1.00:2	./.	0/1:14,10:30:24:0.417:2	0/1:0,9:26:9:1.00:2	0/1:6,6:26:13:0.500:2	0/1:0,2:29:2:1.00:2	0/1:0,17:27:17:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,11:28:11:1.00:2	0/1:0,13:26:13:1.00:2
chr1	54704629	rs2274664	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:18,15:31:33:0.455:2	0/1:4,7:27:11:0.636:2	0/1:0,5:32:5:1.00:2	./.	0/1:17,5:30:22:0.227:2	0/1:13,13:30:26:0.500:2	0/1:0,8:32:8:1.00:2	0/1:11,8:31:19:0.421:2	0/1:19,15:32:34:0.441:2	0/1:10,8:29:18:0.444:2	0/1:13,14:32:27:0.519:2
chr1	54723806	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,3:32:44:0.068:2	./.	./.	./.	./.	./.
chr1	54870570	.	G	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,6:31:79:0.076:2	0/1:84,4:32:88:0.045:2	0/1:73,6:32:79:0.076:2	0/1:79,4:32:83:0.048:2	0/1:103,20:32:123:0.163:2	0/1:97,12:33:109:0.110:2	0/1:82,8:31:90:0.089:2	0/1:117,4:33:121:0.033:2
chr1	54870607	rs368326638	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,3:32:13:0.231:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	54871665	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:31:68:0.059:2	./.	./.	./.
chr1	55050353	rs41294808	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,7:31:16:0.438:2	./.	./.	./.	0/1:71,64:32:135:0.474:2	./.	./.	./.	./.
chr1	55051497	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,4:33:90:0.044:2	./.	./.	./.	./.	./.	./.	./.
chr1	55051515	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,6:31:142:0.042:2	./.	./.	./.
chr1	55060362	rs1702003	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,30:31:68:0.441:2
chr1	55064970	rs148238018	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,73:31:126:0.579:2	./.	./.	./.	./.	./.
chr1	55075452	rs1368883	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,47:31:49:0.979:2	0/1:1,27:30:28:0.964:2	./.	0/1:29,34:31:63:0.540:2	0/1:0,59:30:59:1.00:2	0/1:52,47:31:99:0.475:2	0/1:30,32:32:62:0.516:2	0/1:1,90:31:91:0.989:2	0/1:47,28:33:75:0.373:2	0/1:0,64:31:65:1.00:2	0/1:26,26:31:53:0.500:2
chr1	55076113	rs4926650	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,48:30:91:0.527:2
chr1	55081841	rs142814457	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,32:32:44:0.744:2
chr1	55119144	rs11206407	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:42,23:29:65:0.354:2	0/1:23,24:30:47:0.511:2	0/1:3,4:26:7:0.571:2	./.	0/1:29,29:30:58:0.500:2	0/1:31,26:28:57:0.456:2	0/1:30,26:31:56:0.464:2	./.	0/1:48,31:30:79:0.392:2	./.	./.
chr1	55119289	rs9332417	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:45,46:33:91:0.505:2	0/1:27,23:33:50:0.460:2	0/1:0,11:33:11:1.00:2	./.	0/1:1,69:32:70:0.986:2	0/1:38,50:32:88:0.568:2	0/1:51,43:33:94:0.457:2	0/1:44,55:32:99:0.556:2	0/1:56,55:33:111:0.495:2	0/1:3,82:33:85:0.965:2	./.
chr1	55119515	rs1655519	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:41,39:29:80:0.488:2	0/1:22,31:28:53:0.585:2	./.	0/1:4,101:29:105:0.962:2	./.	0/1:59,59:29:118:0.500:2	0/1:79,56:28:136:0.415:2	0/1:65,60:28:126:0.480:2	./.	./.	0/1:65,53:28:118:0.449:2
chr1	55119534	rs17399810	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,6:30:20:0.300:2	./.	0/1:75,93:31:168:0.554:2	./.	./.	0/1:82,80:31:162:0.494:2	./.	0/1:0,94:32:94:1.00:2	./.
chr1	55119546	rs1655518	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,140:32:140:1.00:2	0/1:1,161:31:162:0.994:2	0/1:0,153:32:153:1.00:2	0/1:2,187:31:190:0.989:2	0/1:0,178:32:178:1.00:2	0/1:0,131:32:131:1.00:2	0/1:0,100:31:100:1.00:2	0/1:0,121:31:121:1.00:2
chr1	55136529	rs480963	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:31,30:29:61:0.492:2	0/1:26,24:29:50:0.480:2	./.	0/1:1,115:29:116:0.991:2	./.	0/1:54,49:29:103:0.476:2	0/1:78,41:29:119:0.345:2	0/1:1,104:29:105:0.990:2	./.	./.	0/1:50,33:29:83:0.398:2
chr1	55139741	rs570218	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:29:52:1.00:2	0/1:0,23:28:23:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,45:29:45:1.00:2	0/1:23,15:30:38:0.395:2	0/1:0,54:29:54:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,62:29:62:1.00:2	./.	0/1:0,81:30:81:1.00:2
chr1	55144466	rs75269200	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,27:33:65:0.415:2	./.	./.	./.	./.	./.	./.	./.
chr1	55165942	rs2304310	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,70:31:166:0.422:2	0/1:76,91:31:167:0.545:2	./.	./.	./.	0/1:62,91:32:153:0.595:2	./.	0/1:75,84:32:159:0.528:2
chr1	55166842	rs1065173	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,51:33:111:0.459:2	0/1:86,56:32:142:0.394:2	./.	./.	./.	0/1:0,82:33:82:1.00:2	./.	0/1:42,48:31:90:0.533:2
chr1	55167773	rs646356	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,142:30:142:1.00:2	0/1:0,91:31:91:1.00:2	0/1:20,14:30:34:0.412:2	0/1:1,187:31:189:0.995:2	0/1:101,96:31:198:0.487:2	0/1:0,190:30:190:1.00:2	0/1:110,84:30:194:0.433:2	0/1:103,88:31:191:0.461:2	0/1:0,183:31:184:1.00:2	0/1:0,155:30:155:1.00:2	0/1:69,71:30:140:0.507:2
chr1	55182300	rs1147990	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,15:33:15:1.00:2	0/1:0,9:32:9:1.00:2	./.	0/1:0,15:31:15:1.00:2	./.	0/1:0,15:32:15:1.00:2	./.	0/1:5,9:31:14:0.643:2	0/1:0,9:31:9:1.00:2	./.	0/1:10,13:30:23:0.565:2
chr1	55186925	rs3737825	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:18,4:33:22:0.182:2	./.	./.	0/1:20,12:31:32:0.375:2	./.	./.	./.	./.	./.	./.	./.
chr1	55188382	rs11550481	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,31:33:57:0.544:2	0/1:20,16:33:36:0.444:2	0/1:7,3:32:10:0.300:2	0/1:32,35:33:67:0.522:2	./.	./.	./.	./.	./.	./.	./.
chr1	55197320	rs1062700	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:37,17:31:54:0.315:2	0/1:17,15:31:32:0.469:2	./.	0/1:38,26:31:64:0.406:2	./.	./.	./.	./.	./.	./.	./.
chr1	55223957	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,4:33:100:0.040:2	./.	./.	./.	./.	./.	./.
chr1	55224131	rs2270004	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,17:33:44:0.386:2	./.	./.	0/1:26,22:33:48:0.458:2	./.	0/1:17,17:33:34:0.500:2
chr1	55224751	rs11577368	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,38:31:69:0.551:2	./.	./.	0/1:38,28:31:66:0.424:2	./.	0/1:27,29:31:56:0.518:2
chr1	55224773	rs116816976	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,45:28:91:0.495:2	./.	./.	./.	./.	./.	./.
chr1	55224784	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:30:94:0.043:2	./.	./.	./.	./.
chr1	55248074	rs12144325	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	0/1:39,23:30:62:0.371:2	./.	0/1:1,73:30:74:0.986:2	./.	./.	./.
chr1	55250479	rs78948067	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:32:15:0.400:2	./.	./.	0/1:52,76:32:128:0.594:2	./.	0/1:3,139:32:142:0.979:2	./.	./.	./.
chr1	55251689	rs586462	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:32:82:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,87:33:87:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,132:32:132:1.00:2	0/1:0,114:31:115:1.00:2	0/1:0,119:33:119:1.00:2	0/1:0,98:32:98:1.00:2	0/1:0,92:32:92:1.00:2
chr1	55266797	rs671108	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,39:27:39:1.00:2	0/1:0,25:29:25:1.00:2	./.	0/1:72,54:29:126:0.429:2	./.	./.	0/1:78,67:29:145:0.462:2	./.	0/1:4,77:30:81:0.951:2	./.	./.
chr1	55273580	rs9782980	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,14:32:33:0.424:2	0/1:0,36:33:36:1.00:2	0/1:23,8:31:31:0.258:2	0/1:11,16:32:27:0.593:2	0/1:16,21:33:37:0.568:2	./.	0/1:11,28:33:39:0.718:2	0/1:0,55:33:55:1.00:2
chr1	55277599	rs600499	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:32:85:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,106:33:106:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,109:33:109:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,128:32:128:1.00:2	0/1:0,85:33:85:1.00:2	0/1:2,70:33:72:0.972:2	0/1:0,81:32:81:1.00:2
chr1	55282721	rs150463971	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,42:32:124:0.339:2	./.	./.	./.	./.
chr1	55307501	rs41297871	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,31:32:32:0.969:2	0/1:0,18:31:18:1.00:2	./.	0/1:21,21:33:42:0.500:2	./.	./.	0/1:17,22:30:39:0.564:2	./.	0/1:39,23:32:62:0.371:2	./.	./.
chr1	55319902	rs718265	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,5:34:13:0.385:2	0/1:42,26:32:68:0.382:2	0/1:0,49:32:49:1.00:2	0/1:48,42:31:90:0.467:2	0/1:23,30:33:53:0.566:2	0/1:45,33:32:78:0.423:2	0/1:37,26:33:63:0.413:2	0/1:0,61:31:61:1.00:2	0/1:0,71:32:71:1.00:2
chr1	55352613	rs79857573	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,34:29:63:0.540:2	./.	./.	./.
chr1	55446697	rs2253465	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,6:32:11:0.545:2	0/1:2,3:31:5:0.600:2	./.	0/1:2,6:28:8:0.750:2	0/1:4,9:31:13:0.692:2	0/1:0,9:31:9:1.00:2	0/1:0,2:29:2:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,12:33:12:1.00:2	0/1:3,4:32:7:0.571:2	0/1:0,9:30:9:1.00:2
chr1	55451976	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,21:30:43:0.488:2	./.	./.
chr1	55457710	rs2500326	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,20:31:49:0.408:2	0/1:12,10:33:22:0.455:2	0/1:0,12:32:12:1.00:2	0/1:0,66:32:66:1.00:2	0/1:53,46:32:99:0.465:2	0/1:0,75:32:75:1.00:2	0/1:60,47:33:107:0.439:2	0/1:0,85:32:85:1.00:2	0/1:0,59:33:59:1.00:2	0/1:33,31:33:64:0.484:2	0/1:0,45:33:45:1.00:2
chr1	55474262	rs33938617	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,43:33:43:1.00:2	0/1:0,25:32:25:1.00:2	./.	0/1:26,17:33:43:0.395:2	./.	./.	./.	./.	./.	./.	0/1:19,36:32:55:0.655:2
chr1	55505540	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	55505647	rs11591147	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,32:31:56:0.571:2	./.	./.	./.	0/1:36,33:32:69:0.478:2	./.	./.
chr1	55505668	rs11583680	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,24:30:57:0.421:2	./.	./.	./.	0/1:30,36:31:66:0.545:2	./.	./.
chr1	55512316	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,7:31:16:0.438:2	./.	./.	./.	./.	./.	./.	./.
chr1	55523033	rs509504	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:32:56:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,87:33:87:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,91:32:91:1.00:2	0/1:1,80:32:81:0.988:2	0/1:0,88:32:88:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,69:32:69:1.00:2
chr1	55524197	rs540796	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,157:32:157:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,18:32:18:1.00:2	0/1:1,184:32:185:0.995:2	0/1:0,187:32:187:1.00:2	0/1:103,83:32:186:0.446:2	0/1:0,176:32:176:1.00:2	0/1:1,172:32:173:0.994:2	0/1:89,92:33:182:0.508:2	0/1:0,178:32:178:1.00:2	0/1:0,175:32:175:1.00:2
chr1	55524237	rs562556	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,129:31:129:1.00:2	0/1:0,82:31:82:1.00:2	0/1:0,18:30:18:1.00:2	0/1:1,146:31:147:0.993:2	0/1:0,131:30:131:1.00:2	0/1:75,72:30:147:0.490:2	0/1:0,126:31:126:1.00:2	0/1:0,145:30:145:1.00:2	0/1:60,66:31:127:0.524:2	0/1:0,141:31:141:1.00:2	0/1:1,126:30:128:0.992:2
chr1	55529187	rs505151	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:31:54:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,26:31:26:1.00:2
chr1	55538462	rs17410294	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,15:31:45:0.333:2	./.	./.	./.	./.	./.
chr1	55541174	rs487230	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,81:32:81:1.00:2	0/1:7,16:33:23:0.696:2	0/1:1,127:33:128:0.992:2	0/1:2,99:32:101:0.980:2	0/1:70,48:33:118:0.407:2	0/1:1,111:33:112:0.991:2	0/1:0,120:33:120:1.00:2	0/1:0,126:34:126:1.00:2	0/1:1,128:33:129:0.992:2	0/1:0,171:33:171:1.00:2
chr1	55551677	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:33:53:0.077:2	./.	./.	./.	./.
chr1	55575881	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:32:110:0.036:2	./.	./.	./.	./.	./.
chr1	55591139	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.	./.
chr1	55591356	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:34:156:0.026:2	./.
chr1	55627878	rs140813382	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,15:30:33:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	55638075	rs1165222	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:32:71:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,46:31:46:1.00:2	0/1:33,37:31:70:0.529:2	0/1:0,57:31:57:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,86:32:86:1.00:2
chr1	55643674	rs139709300	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,12:32:20:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	56977819	rs3738570	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,9:31:18:0.500:2	./.	./.	./.
chr1	56990038	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:30:116:0.034:2	./.	./.	./.
chr1	57002627	rs1136164	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,12:32:31:0.387:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	57002753	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.
chr1	57185340	rs41285924	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,21:33:46:0.457:2	./.	./.	./.
chr1	57209695	rs1156845	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,18:31:36:0.500:2	./.	./.	./.	./.	./.	./.
chr1	57221553	rs1774808	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,19:33:31:0.613:2	0/1:13,11:32:24:0.458:2	0/1:1,2:32:3:0.667:2	0/1:2,35:31:37:0.946:2	0/1:11,13:31:24:0.542:2	0/1:0,28:32:28:1.00:2	0/1:0,26:31:26:1.00:2	0/1:4,21:32:25:0.840:2	0/1:26,9:32:35:0.257:2	./.	0/1:0,43:33:43:1.00:2
chr1	57221554	rs1738401	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,19:33:30:0.633:2	0/1:13,11:33:24:0.458:2	0/1:0,2:33:2:1.00:2	0/1:0,35:33:35:1.00:2	0/1:11,13:32:24:0.542:2	0/1:0,28:32:28:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,21:32:21:1.00:2	0/1:23,9:33:32:0.281:2	./.	0/1:0,43:33:43:1.00:2
chr1	57257817	rs2298130	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,14:33:24:0.583:2	0/1:15,18:33:33:0.545:2	0/1:7,19:32:26:0.731:2	0/1:6,6:28:12:0.500:2	./.	./.	./.	0/1:19,27:32:46:0.587:2
chr1	57340727	rs652785	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:15,27:33:42:0.643:2	0/1:10,13:32:23:0.565:2	0/1:0,6:31:6:1.00:2	./.	0/1:54,19:31:73:0.260:2	./.	0/1:35,22:32:57:0.386:2	./.	0/1:31,36:33:67:0.537:2	0/1:25,20:30:45:0.444:2	./.
chr1	57383358	rs17300936	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,84:31:148:0.568:2	0/1:57,44:31:101:0.436:2	./.	./.	./.	0/1:89,87:30:176:0.494:2	./.	0/1:108,84:31:192:0.438:2	./.	./.	./.
chr1	57415310	rs12085435	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,31:32:85:0.365:2	./.	0/1:33,24:33:57:0.421:2	./.
chr1	57422484	rs1013579	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:33:74:1.00:2	0/1:0,40:33:40:1.00:2	0/1:13,5:27:18:0.278:2	0/1:0,111:32:111:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,122:32:122:1.00:2	0/1:0,143:32:143:1.00:2	0/1:0,121:33:121:1.00:2	0/1:0,100:33:100:1.00:2	0/1:0,117:33:117:1.00:2
chr1	57422511	rs12067507	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,71:32:147:0.483:2	./.	0/1:51,56:32:107:0.523:2	./.
chr1	57480750	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:31:84:0.048:2
chr1	58939634	rs12407003	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,65:32:132:0.492:2	./.	./.	./.	0/1:71,50:34:122:0.413:2	./.	./.
chr1	58971831	rs3087585	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:39,31:31:70:0.443:2	0/1:28,26:32:55:0.481:2	./.	./.	0/1:54,35:30:89:0.393:2	0/1:52,52:32:104:0.500:2	0/1:45,65:31:110:0.591:2	0/1:63,61:31:124:0.492:2	0/1:52,51:32:103:0.495:2	0/1:1,93:31:94:0.989:2	0/1:46,43:30:89:0.483:2
chr1	58999651	rs17117678	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,55:32:96:0.573:2	./.	0/1:55,64:33:119:0.538:2	0/1:55,59:34:114:0.518:2	0/1:42,34:32:76:0.447:2	./.
chr1	59002221	rs7537470	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,71:32:144:0.497:2	./.	0/1:55,44:33:99:0.444:2	0/1:69,77:34:146:0.527:2	0/1:60,45:32:105:0.429:2	./.
chr1	59041940	rs114373153	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,26:32:60:0.433:2	./.	./.	./.	./.	./.
chr1	59042001	rs12121124	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,27:30:53:0.509:2	./.	./.	./.	./.	./.	./.	0/1:12,12:29:24:0.500:2
chr1	59042311	rs35075952	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,3:34:14:0.214:2	0/1:15,5:34:20:0.250:2	0/1:9,3:32:12:0.250:2	./.
chr1	59042997	rs61779294	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,7:28:13:0.538:2	0/1:6,3:33:9:0.333:2	0/1:0,4:29:4:1.00:2	./.
chr1	59125683	rs232777	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,5:32:14:0.357:2	0/1:49,33:31:83:0.402:2	./.	./.	./.	./.	./.	./.	./.
chr1	59127086	rs7523134	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,48:32:106:0.453:2	0/1:32,28:31:60:0.467:2	0/1:6,4:29:10:0.400:2	0/1:39,45:31:84:0.536:2	./.	0/1:1,66:31:67:0.985:2	./.	0/1:56,24:31:80:0.300:2	./.	./.	0/1:74,65:31:139:0.468:2
chr1	59139251	rs138210329	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,28:32:58:0.483:2	./.	./.
chr1	59142713	rs579110	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,24:28:59:0.407:2	0/1:30,17:29:47:0.362:2	./.	0/1:0,46:30:46:1.00:2	0/1:26,29:30:55:0.527:2	0/1:41,31:30:72:0.431:2	0/1:0,36:30:36:1.00:2	./.
chr1	59147926	rs12139511	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,27:32:44:0.614:2	0/1:12,30:32:42:0.714:2	./.	0/1:0,35:32:35:1.00:2	0/1:21,25:32:46:0.543:2	0/1:21,23:33:44:0.523:2	0/1:0,43:33:43:1.00:2	./.
chr1	59148118	rs17118103	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,13:33:31:0.419:2	0/1:75,74:32:149:0.497:2	./.	./.	./.	./.	./.	./.	./.
chr1	59148136	rs141778225	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,62:33:131:0.473:2	./.	./.	./.	./.
chr1	59160885	rs2064374	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,23:33:23:1.00:2	0/1:0,13:32:13:1.00:2	./.	0/1:8,9:33:17:0.529:2	0/1:9,5:30:14:0.357:2	0/1:2,11:33:13:0.846:2	./.	0/1:11,20:32:31:0.645:2	0/1:15,9:33:24:0.375:2	./.	0/1:0,39:32:39:1.00:2
chr1	59248813	rs2760499	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:31:49:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,41:33:41:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,33:31:33:1.00:2
chr1	59249031	rs2811894	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,18:30:18:1.00:2	0/1:0,23:31:23:1.00:2	./.	0/1:0,19:33:19:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,27:31:27:1.00:2
chr1	59249213	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:24:8:0.500:2	0/1:5,4:26:9:0.444:2	0/1:1,4:26:5:0.800:2	./.	./.	./.
chr1	59249347	rs1407816	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:28:73:1.00:2	0/1:0,26:29:26:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,87:27:87:1.00:2	0/1:0,74:28:74:1.00:2	0/1:0,64:28:64:1.00:2	0/1:0,56:28:56:1.00:2	0/1:0,76:28:76:1.00:2	0/1:0,75:29:75:1.00:2	0/1:0,32:27:32:1.00:2	0/1:0,38:27:38:1.00:2
chr1	59787350	rs835409	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,44:32:92:0.478:2	0/1:28,39:32:67:0.582:2	./.	./.	0/1:43,40:31:83:0.482:2	0/1:38,28:33:66:0.424:2	./.	./.
chr1	59844471	rs835435	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,37:32:46:0.804:2	0/1:0,32:32:32:1.00:2	0/1:23,15:32:38:0.395:2	0/1:9,24:32:33:0.727:2	0/1:25,25:32:50:0.500:2	0/1:22,21:33:43:0.488:2	./.	./.
chr1	60019853	rs62623594	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:118,79:31:197:0.401:2	./.	./.	./.	./.	./.	./.
chr1	60091737	rs373070133	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:171,4:33:175:0.023:2	./.	./.	./.	./.	./.	./.
chr1	60381674	rs2229190	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:31:67:0.060:2	./.	./.
chr1	60466814	rs626251	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,27:30:29:0.931:2	0/1:11,9:30:20:0.450:2	0/1:0,24:28:24:1.00:2	0/1:14,11:32:25:0.440:2	./.	0/1:17,7:32:24:0.292:2	./.	0/1:17,6:29:23:0.261:2
chr1	60503762	rs17560663	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:19,24:33:43:0.558:2	0/1:16,7:33:23:0.304:2	./.	./.	0/1:11,10:31:21:0.476:2	./.	0/1:10,18:31:28:0.643:2	0/1:2,22:32:24:0.917:2	./.	./.	./.
chr1	60506762	rs74843231	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,101:33:185:0.546:2	./.	./.	./.	./.
chr1	61869783	rs2236059	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,59:31:117:0.504:2	./.	./.	0/1:73,56:31:129:0.434:2	0/1:0,150:32:150:1.00:2	0/1:56,57:33:113:0.504:2	0/1:42,45:32:87:0.517:2	0/1:2,101:32:104:0.981:2
chr1	61872353	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:33:190:0.021:2	./.	./.
chr1	62190953	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,63:32:125:0.504:2	./.	./.	./.	./.	./.	./.	./.
chr1	62232031	rs1286835	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,27:31:27:1.00:2	0/1:0,13:31:13:1.00:2	./.	0/1:0,43:30:43:1.00:2	0/1:0,10:30:11:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,43:31:43:1.00:2
chr1	62232130	rs11207827	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:19,7:33:26:0.269:2	./.	./.	0/1:7,19:33:26:0.731:2	./.	./.	./.	./.	./.	./.	./.
chr1	62253483	rs3762321	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,29:32:58:0.500:2	./.	./.	./.
chr1	62257036	rs1286823	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,21:32:40:0.525:2	0/1:28,31:34:60:0.525:2	./.	./.
chr1	62261168	rs7516332	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,60:32:127:0.472:2	0/1:3,78:31:81:0.963:2	0/1:56,61:32:117:0.521:2	0/1:3,76:32:79:0.962:2	0/1:67,57:32:124:0.460:2	0/1:53,51:33:104:0.490:2	0/1:59,58:32:117:0.496:2	./.
chr1	62330080	rs2799627	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,49:32:50:0.980:2	0/1:0,36:32:36:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,36:33:36:1.00:2	0/1:0,81:33:81:1.00:2	0/1:0,51:33:51:1.00:2	0/1:1,74:33:75:0.987:2	0/1:0,72:33:72:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,68:34:68:1.00:2
chr1	62380270	rs1134766	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,14:31:15:0.933:2	0/1:2,175:32:177:0.989:2	./.	0/1:137,51:30:188:0.271:2	0/1:104,61:32:165:0.370:2	0/1:0,177:32:177:1.00:2	0/1:0,158:33:158:1.00:2	0/1:115,56:31:171:0.327:2	0/1:91,78:33:169:0.462:2
chr1	62380298	rs1056513	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,90:33:91:0.989:2	./.	./.	0/1:72,47:32:119:0.395:2	0/1:4,125:33:129:0.969:2	0/1:0,100:34:100:1.00:2	0/1:91,38:32:129:0.295:2	0/1:57,69:34:126:0.548:2
chr1	62455971	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:33:115:0.035:2	./.	./.
chr1	62456014	rs1134767	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:33:6:0.667:2	0/1:39,41:31:80:0.513:2	./.	./.	0/1:30,20:32:50:0.400:2	0/1:32,34:30:66:0.515:2	./.	./.	./.
chr1	62483599	rs34726576	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,9:30:55:0.164:2	./.	./.	0/1:43,40:32:83:0.482:2	./.	./.	./.
chr1	62483623	rs41313250	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,14:32:45:0.311:2	./.	./.	./.	./.	./.	./.
chr1	62516683	rs2498982	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,31:33:71:0.437:2	0/1:32,23:32:55:0.418:2	0/1:0,7:31:7:1.00:2	0/1:39,40:32:79:0.506:2	0/1:29,35:32:64:0.547:2	0/1:58,30:32:88:0.341:2	0/1:50,25:32:75:0.333:2	0/1:43,50:33:93:0.538:2	./.	./.	./.
chr1	62579823	rs1475563	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,53:31:103:0.515:2	0/1:28,36:32:64:0.563:2	0/1:0,13:31:13:1.00:2	0/1:89,77:32:166:0.464:2	0/1:72,39:31:111:0.351:2	0/1:78,56:31:134:0.418:2	0/1:76,58:32:134:0.433:2	0/1:154,5:31:159:0.031:2	./.	0/1:3,112:31:115:0.974:2	0/1:80,67:32:147:0.456:2
chr1	62579891	rs12140153	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,5:31:15:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	62579907	rs7418709	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,47:32:108:0.435:2	./.	./.	./.	./.	./.	0/1:1,72:32:73:0.986:2	0/1:59,39:32:98:0.398:2
chr1	62582867	rs374945847	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,29:33:62:0.468:2	0/1:10,17:32:27:0.630:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	62594593	rs2476194	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:21,31:31:52:0.596:2	0/1:20,10:31:30:0.333:2	0/1:2,7:30:9:0.778:2	./.	0/1:45,31:31:76:0.408:2	./.	0/1:49,33:32:82:0.402:2	./.	0/1:47,31:32:78:0.397:2	./.	./.
chr1	62672481	rs146949245	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,55:34:109:0.505:2	./.	./.
chr1	62672546	rs2457829	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,49:32:50:0.980:2	0/1:0,29:33:29:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,41:31:41:1.00:2	0/1:2,37:32:39:0.949:2	0/1:0,36:32:36:1.00:2	0/1:25,17:34:42:0.405:2	0/1:23,9:32:32:0.281:2	0/1:0,51:32:51:1.00:2
chr1	62673037	rs7542665	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,23:30:61:0.377:2	0/1:20,13:32:33:0.394:2	0/1:0,10:33:10:1.00:2	0/1:0,80:33:80:1.00:2	0/1:3,59:32:62:0.952:2	0/1:52,35:32:87:0.402:2	0/1:2,66:33:68:0.971:2	0/1:41,48:33:89:0.539:2	0/1:34,29:33:63:0.460:2	./.	0/1:39,39:33:78:0.500:2
chr1	62673225	rs7533274	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,14:32:42:0.333:2	0/1:10,17:31:27:0.630:2	0/1:0,4:31:4:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,21:30:21:1.00:2	0/1:19,14:30:33:0.424:2	0/1:0,26:31:26:1.00:2	0/1:11,17:32:28:0.607:2	0/1:18,26:32:44:0.591:2	./.	0/1:27,34:32:61:0.557:2
chr1	62673287	rs2457828	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,6:33:25:0.240:2	0/1:3,7:33:10:0.700:2	./.	0/1:7,12:33:19:0.632:2	0/1:6,9:33:15:0.600:2	./.	0/1:5,7:31:12:0.583:2	0/1:10,8:33:18:0.444:2	./.	./.	0/1:17,13:34:30:0.433:2
chr1	62675619	rs4625314	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:45,45:33:90:0.500:2	0/1:26,27:32:53:0.509:2	./.	0/1:2,64:32:66:0.970:2	0/1:2,51:30:53:0.962:2	0/1:42,21:32:63:0.333:2	0/1:38,15:32:53:0.283:2	0/1:45,44:32:89:0.494:2	./.	./.	0/1:73,51:32:124:0.411:2
chr1	62675664	rs200931139	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,8:28:35:0.229:2	./.	0/1:43,9:29:52:0.173:2	./.	./.	./.	./.	./.
chr1	62675667	rs201629799	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,8:29:35:0.229:2	./.	0/1:43,7:33:50:0.140:2	./.	./.	./.	./.	./.
chr1	62675673	rs200789118	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:29:44:0.091:2	./.	./.	./.	./.	./.
chr1	62675674	rs141196718	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:32:43:0.095:2	./.	./.	./.	./.	./.
chr1	62675709	rs7551777	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:31:14:0.500:2	./.	./.	./.	0/1:24,22:32:46:0.478:2	./.	0/1:37,27:34:64:0.422:2	./.	./.
chr1	62675892	rs2481694	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,26:32:54:0.481:2	0/1:19,22:32:41:0.537:2	0/1:0,13:32:13:1.00:2	0/1:2,62:33:64:0.969:2	0/1:0,33:32:33:1.00:2	0/1:30,35:32:65:0.538:2	0/1:0,30:31:30:1.00:2	0/1:24,25:32:49:0.510:2	0/1:28,33:33:61:0.541:2	./.	0/1:44,32:33:76:0.421:2
chr1	62676091	rs11207933	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,21:30:52:0.404:2	./.	0/1:18,37:29:55:0.673:2	0/1:33,24:31:57:0.421:2	./.	0/1:41,24:31:65:0.369:2	./.	./.
chr1	62676284	rs2886644	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,20:31:54:0.370:2	./.	./.	./.	./.	./.	./.
chr1	62676612	rs66958136	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,61:34:117:0.521:2	0/1:33,50:33:83:0.602:2	0/1:11,7:33:18:0.389:2	0/1:1,134:33:135:0.993:2	0/1:31,45:33:76:0.592:2	0/1:59,66:33:125:0.528:2	0/1:36,56:33:92:0.609:2	0/1:62,72:33:134:0.537:2	./.	./.	0/1:74,79:32:153:0.516:2
chr1	62713224	rs2941679	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,73:33:74:0.986:2	0/1:0,43:33:43:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,92:33:92:1.00:2	0/1:0,177:32:177:1.00:2	0/1:0,110:33:110:1.00:2	0/1:0,187:33:187:1.00:2	0/1:0,156:33:156:1.00:2	0/1:0,102:34:103:1.00:2	0/1:0,76:33:77:1.00:2	0/1:0,65:33:65:1.00:2
chr1	62713246	rs10889315	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:47,31:32:78:0.397:2	0/1:21,22:31:43:0.512:2	./.	0/1:1,90:31:92:0.989:2	0/1:113,79:31:192:0.411:2	0/1:73,49:31:122:0.402:2	0/1:85,87:32:172:0.506:2	0/1:90,69:32:159:0.434:2	./.	./.	0/1:40,35:32:75:0.467:2
chr1	62728784	rs2666472	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,71:28:72:0.986:2	0/1:0,37:28:37:1.00:2	0/1:0,10:28:10:1.00:2	0/1:0,75:28:75:1.00:2	0/1:79,25:28:104:0.240:2	0/1:0,96:28:96:1.00:2	0/1:1,105:27:106:0.991:2	0/1:0,87:28:87:1.00:2	0/1:1,92:29:93:0.989:2	0/1:0,65:28:65:1.00:2	0/1:1,77:28:78:0.987:2
chr1	62728838	rs2258470	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:29:65:1.00:2	0/1:0,37:29:37:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,106:30:106:1.00:2	0/1:118,38:29:156:0.244:2	0/1:0,117:30:117:1.00:2	0/1:2,123:30:125:0.984:2	0/1:0,132:29:132:1.00:2	0/1:1,101:30:102:0.990:2	0/1:0,68:29:68:1.00:2	0/1:1,71:29:72:0.986:2
chr1	62728861	rs2260581	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,7:34:7:1.00:2	0/1:0,108:33:108:1.00:2	0/1:104,37:32:141:0.262:2	0/1:0,109:32:109:1.00:2	0/1:2,116:33:118:0.983:2	0/1:0,140:33:140:1.00:2	0/1:1,90:33:91:0.989:2	0/1:0,72:33:72:1.00:2	0/1:2,67:32:69:0.971:2
chr1	62728918	rs2262110	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,19:33:19:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,50:32:50:1.00:2	0/1:46,33:32:79:0.418:2	0/1:0,79:32:79:1.00:2	0/1:1,60:31:61:0.984:2	0/1:0,75:32:75:1.00:2	0/1:1,52:32:53:0.981:2	0/1:0,47:32:47:1.00:2	0/1:1,40:32:41:0.976:2
chr1	62732421	rs11207949	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:65,39:28:104:0.375:2	0/1:32,37:29:69:0.536:2	./.	./.	./.	./.	0/1:48,38:30:86:0.442:2	0/1:68,62:29:130:0.477:2	0/1:0,106:29:106:1.00:2	0/1:54,48:29:102:0.471:2	0/1:85,62:29:147:0.422:2
chr1	62734089	rs17123306	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,27:32:59:0.458:2	./.	./.	./.	./.	./.	./.	./.
chr1	62738904	rs7516290	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:26:49:1.00:2	0/1:0,32:27:32:1.00:2	0/1:0,5:26:5:1.00:2	0/1:1,65:28:66:0.985:2	0/1:34,30:28:64:0.469:2	0/1:35,29:29:64:0.453:2	0/1:0,39:27:39:1.00:2	0/1:0,38:25:38:1.00:2	0/1:0,63:28:65:1.00:2	0/1:0,52:27:52:1.00:2	0/1:1,38:26:39:0.974:2
chr1	62738961	rs61623093	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,24:29:60:0.400:2	./.	./.	./.	./.	./.	./.	0/1:14,21:30:35:0.600:2
chr1	62739198	rs17855078	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,60:31:116:0.517:2	0/1:28,20:31:48:0.417:2	0/1:0,10:30:10:1.00:2	0/1:57,39:31:96:0.406:2	0/1:51,30:30:81:0.370:2	./.	0/1:50,54:31:104:0.519:2	0/1:46,47:31:93:0.505:2	./.	0/1:34,34:31:68:0.500:2	0/1:38,44:29:82:0.537:2
chr1	62739495	rs115190866	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,58:31:116:0.500:2	./.	./.	./.	./.	./.
chr1	62740065	rs12127930	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,62:29:127:0.488:2	0/1:35,36:29:72:0.507:2	0/1:0,23:29:23:1.00:2	0/1:0,188:29:188:1.00:2	0/1:82,108:29:190:0.568:2	0/1:102,91:29:194:0.472:2	0/1:98,93:29:191:0.487:2	0/1:92,94:28:186:0.505:2	./.	0/1:88,66:29:155:0.429:2	0/1:1,148:29:149:0.993:2
chr1	62740264	rs41309173	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,15:28:34:0.441:2	./.	./.	./.	./.	./.
chr1	62740446	rs2666506	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:29:53:1.00:2	0/1:0,24:28:24:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,54:30:54:1.00:2	0/1:64,26:28:90:0.289:2	0/1:67,54:29:121:0.446:2	0/1:1,63:29:64:0.984:2	0/1:0,48:29:48:1.00:2	0/1:0,58:29:58:1.00:2	0/1:1,54:29:55:0.982:2	0/1:0,55:29:55:1.00:2
chr1	62740449	rs2666507	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:27:53:1.00:2	0/1:0,24:27:24:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,54:29:54:1.00:2	0/1:60,25:28:86:0.294:2	0/1:66,54:28:121:0.450:2	0/1:1,62:29:63:0.984:2	0/1:0,48:29:48:1.00:2	0/1:0,58:27:58:1.00:2	0/1:2,54:28:56:0.964:2	0/1:0,54:29:54:1.00:2
chr1	62740752	rs17123318	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:29:11:0.636:2	./.	./.	./.	./.	./.	./.	./.
chr1	62907883	rs34521477	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,5:29:23:0.217:2	0/1:25,21:30:46:0.457:2	./.	./.	./.
chr1	62916290	rs141001844	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,15:32:29:0.517:2	./.	./.	./.	./.	./.
chr1	62941456	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:34:91:0.044:2	./.	./.
chr1	62960101	rs10889335	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,58:33:135:0.430:2	./.	0/1:78,81:32:159:0.509:2	./.	0/1:57,68:32:125:0.544:2	./.	./.	./.
chr1	62970382	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:31:66:0.061:2
chr1	63069711	rs12563308	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,37:33:100:0.370:2	./.	./.
chr1	63097008	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:159,5:27:164:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr1	63153953	rs4344355	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.
chr1	63299751	rs146422144	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,16:31:36:0.444:2	./.
chr1	63307154	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.
chr1	63788951	rs2274187	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr1	63790503	rs6588025	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:8,4:32:12:0.333:2	0/1:4,4:32:8:0.500:2	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	0/1:4,3:33:7:0.429:2	./.	./.
chr1	63877638	rs76393703	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,10:17:159:0.063:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,12:15:148:0.081:2
chr1	63881552	rs4630153	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,11:31:26:0.423:2	0/1:0,130:31:130:1.00:2	0/1:59,44:31:103:0.427:2	0/1:72,44:31:116:0.379:2	0/1:44,32:31:76:0.421:2	0/1:75,52:32:127:0.409:2	0/1:2,133:32:135:0.985:2	0/1:61,58:32:119:0.487:2	0/1:102,84:31:186:0.452:2
chr1	63894794	rs116660078	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,18:31:25:0.720:2	./.	./.	./.	./.	./.	./.
chr1	63991267	rs217478	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:28:10:0.400:2	0/1:0,69:30:69:1.00:2	0/1:38,38:29:77:0.500:2	./.	0/1:45,31:30:76:0.408:2	./.	0/1:80,35:30:115:0.304:2	./.	./.
chr1	64015033	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:130,4:32:136:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr1	64015217	rs217485	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,2:33:4:0.500:2	0/1:1,47:31:48:0.979:2	0/1:12,6:31:18:0.333:2	./.	0/1:16,16:33:32:0.500:2	./.	0/1:24,26:32:50:0.520:2	./.	./.
chr1	64036760	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:31:197:0.025:2	./.	./.	./.	./.	./.
chr1	64095111	rs855314	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,60:32:135:0.444:2	./.	./.	0/1:85,64:33:149:0.430:2	./.	./.
chr1	64097432	rs1126728	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:61,42:33:103:0.408:2	0/1:29,20:33:49:0.408:2	./.	./.	0/1:62,43:33:105:0.410:2	./.	./.	./.	./.	0/1:54,43:33:97:0.443:2	0/1:77,55:33:132:0.417:2
chr1	64114301	rs11208257	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,37:33:38:0.974:2	0/1:2,17:33:19:0.895:2	./.	0/1:15,33:32:48:0.688:2	./.	./.	./.	./.	./.	./.	./.
chr1	64515379	rs1772626	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,14:32:14:1.00:2	0/1:0,14:31:14:1.00:2	./.	0/1:0,27:31:27:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,54:32:54:1.00:2	0/1:2,42:33:44:0.955:2	0/1:20,16:32:36:0.444:2	0/1:1,24:33:25:0.960:2
chr1	64603118	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,4:32:98:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr1	64608329	rs2762833	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,20:32:20:1.00:2	0/1:0,18:33:18:1.00:2	./.	0/1:0,23:32:23:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,41:31:41:1.00:2
chr1	64624842	rs6668545	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,50:32:101:0.500:2	0/1:42,29:31:71:0.408:2	0/1:39,47:31:86:0.547:2	0/1:50,33:32:83:0.398:2	./.	./.	./.	0/1:80,25:32:105:0.238:2
chr1	64643277	rs7527017	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,37:32:67:0.552:2	0/1:25,13:31:38:0.342:2	0/1:34,32:31:66:0.485:2	./.	./.	./.	./.	./.
chr1	64672478	rs35112334	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,7:29:21:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	65016349	rs2164571	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,122:31:122:1.00:2	0/1:0,76:31:76:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,127:31:127:1.00:2	0/1:0,118:31:118:1.00:2	0/1:1,135:31:136:0.993:2	0/1:0,115:32:115:1.00:2	0/1:1,136:31:137:0.993:2	0/1:0,119:32:119:1.00:2	0/1:0,141:31:141:1.00:2	0/1:0,111:31:111:1.00:2
chr1	65095054	rs17383227	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,35:31:89:0.393:2	./.	./.	./.	./.	./.	./.	0/1:54,36:32:90:0.400:2
chr1	65113568	rs6588100	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,84:30:84:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,121:29:121:1.00:2	0/1:0,129:30:130:1.00:2	0/1:0,121:29:121:1.00:2	0/1:0,131:30:131:1.00:2	0/1:0,139:29:139:1.00:2	0/1:0,115:30:115:1.00:2	0/1:0,81:28:81:1.00:2	0/1:0,108:29:108:1.00:2
chr1	65147002	rs3828064	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,74:33:170:0.438:2	./.	./.
chr1	65303659	rs12129819	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,36:33:79:0.456:2	0/1:31,25:33:56:0.446:2	./.	./.	./.	./.	./.	./.	0/1:73,75:33:148:0.507:2	./.	./.
chr1	65310489	rs2230588	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:39,42:29:81:0.519:2	0/1:14,15:28:29:0.517:2	./.	./.	0/1:53,48:29:101:0.475:2	0/1:41,40:29:81:0.494:2	./.	0/1:110,4:31:114:0.035:2	0/1:50,47:31:97:0.485:2	0/1:57,34:29:91:0.374:2	./.
chr1	65311262	rs2230587	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,34:30:81:0.420:2	0/1:23,20:30:43:0.465:2	0/1:0,8:31:9:1.00:2	0/1:63,37:30:101:0.370:2	0/1:43,20:30:63:0.317:2	./.	0/1:49,38:29:88:0.437:2	0/1:55,34:30:89:0.382:2	./.	0/1:53,25:30:78:0.321:2	./.
chr1	65312342	rs17127063	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,44:31:96:0.458:2	./.	./.	./.	0/1:43,30:32:73:0.411:2	./.
chr1	65323357	rs34597718	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:104,90:32:194:0.464:2	./.	./.	./.	./.	./.	./.
chr1	65335062	rs45598436	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,18:28:63:0.286:2	0/1:15,25:30:40:0.625:2	./.	./.	./.	./.	./.	./.	0/1:62,49:30:111:0.441:2	./.	./.
chr1	65614154	rs17853973	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,22:30:79:0.278:2	./.	./.	./.	./.	./.	./.
chr1	65656412	rs370616612	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,4:33:94:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr1	65684529	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,8:31:165:0.048:2
chr1	65690461	rs4915685	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,51:32:126:0.405:2	./.	0/1:77,69:32:146:0.473:2	0/1:91,79:32:170:0.465:2	./.	0/1:90,86:33:176:0.489:2	0/1:105,74:32:179:0.413:2
chr1	65691779	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:178,4:32:182:0.022:2	./.	./.	./.	./.	./.	./.	0/1:191,4:32:195:0.021:2	./.	./.	0/1:157,16:31:173:0.092:2
chr1	65845148	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,80:31:199:0.402:2	./.	./.	./.	./.	./.
chr1	65849887	rs61753391	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,102:33:190:0.537:2	./.	./.
chr1	65855065	rs142136708	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,65:32:137:0.474:2	./.	./.
chr1	65858145	rs4325172	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:67,43:32:110:0.391:2	0/1:28,20:32:48:0.417:2	./.	0/1:3,128:32:131:0.977:2	0/1:74,73:31:147:0.497:2	0/1:0,99:32:99:1.00:2	0/1:105,61:31:166:0.367:2	0/1:66,51:31:117:0.436:2	0/1:72,71:33:143:0.497:2	0/1:0,92:31:92:1.00:2	0/1:0,99:32:99:1.00:2
chr1	65858151	rs11208644	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,6:31:176:0.034:2	./.	./.	./.	./.
chr1	65860687	rs4582839	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,19:32:46:0.413:2	0/1:13,15:32:28:0.536:2	./.	0/1:0,43:32:43:1.00:2	0/1:17,14:32:31:0.452:2	0/1:0,47:32:47:1.00:2	0/1:10,24:32:34:0.706:2	0/1:38,22:32:60:0.367:2	0/1:0,32:33:32:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,42:32:42:1.00:2
chr1	65867519	rs4915691	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,17:32:29:0.586:2	./.	./.
chr1	65886398	rs3790435	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:25,7:31:32:0.219:2	./.	./.	0/1:0,45:32:45:1.00:2	./.	0/1:0,41:32:41:1.00:2	./.	./.	./.	0/1:0,32:31:32:1.00:2	0/1:21,9:31:30:0.300:2
chr1	65886448	rs3790434	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:23,13:28:36:0.361:2	./.	./.	0/1:0,57:29:57:1.00:2	./.	0/1:0,47:28:47:1.00:2	./.	./.	./.	0/1:0,18:27:18:1.00:2	0/1:21,11:26:32:0.344:2
chr1	66036441	rs1137100	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:32:3:0.667:2	0/1:27,23:33:50:0.460:2	./.	0/1:20,29:32:49:0.592:2	./.	./.	./.	0/1:19,17:33:36:0.472:2	0/1:30,30:33:60:0.500:2
chr1	66058513	rs1137101	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,41:31:92:0.446:2	0/1:31,16:30:47:0.340:2	0/1:4,4:30:8:0.500:2	0/1:48,36:31:84:0.429:2	./.	0/1:46,34:31:80:0.425:2	./.	./.	0/1:56,63:31:119:0.529:2	0/1:53,33:29:86:0.384:2	0/1:56,53:31:109:0.486:2
chr1	66067109	rs1805134	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,27:32:47:0.574:2	0/1:20,15:31:35:0.429:2	./.	./.	./.	./.	./.	./.	0/1:33,16:31:49:0.327:2	./.	0/1:45,41:30:87:0.477:2
chr1	66075952	rs1805094	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:44,39:29:83:0.470:2	0/1:30,38:29:68:0.559:2	./.	./.	./.	./.	0/1:28,12:28:40:0.300:2	0/1:47,39:29:86:0.453:2	0/1:63,51:30:114:0.447:2	./.	./.
chr1	66087116	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:33:123:0.033:2	./.
chr1	66102257	rs1805096	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,16:32:25:0.640:2	0/1:9,5:31:14:0.357:2	0/1:0,4:32:4:1.00:2	0/1:9,10:32:19:0.526:2	./.	0/1:15,9:31:24:0.375:2	0/1:11,9:30:20:0.450:2	0/1:9,5:33:14:0.357:2	0/1:0,38:33:38:1.00:2	0/1:5,10:32:15:0.667:2	./.
chr1	66384438	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:32:157:0.025:2	./.	./.	./.	./.	./.
chr1	66713196	rs75398902	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,47:33:87:0.540:2	./.	./.	./.
chr1	66732386	rs6588194	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,11:32:29:0.379:2	0/1:11,11:32:22:0.500:2	0/1:8,3:32:11:0.273:2	0/1:27,21:31:48:0.438:2	0/1:25,3:30:28:0.107:2	0/1:0,39:31:39:1.00:2	0/1:49,15:32:64:0.234:2	./.	0/1:34,23:32:57:0.404:2	0/1:0,37:32:37:1.00:2	0/1:2,55:32:57:0.965:2
chr1	66831370	rs783036	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,27:32:86:0.314:2	0/1:20,15:32:35:0.429:2	0/1:9,7:32:16:0.438:2	0/1:0,110:30:110:1.00:2	0/1:49,40:31:89:0.449:2	0/1:45,47:31:92:0.511:2	./.	0/1:70,53:31:123:0.431:2	0/1:2,124:32:126:0.984:2	0/1:57,42:31:99:0.424:2	0/1:62,62:31:124:0.500:2
chr1	67109277	rs17490057	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,62:32:133:0.470:2
chr1	67109335	rs7526812	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,39:33:96:0.406:2	./.	0/1:77,60:33:137:0.438:2	./.	./.
chr1	67137687	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:29:93:0.044:2	./.	./.	./.
chr1	67154850	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,11:16:108:0.102:2	./.
chr1	67236097	rs1060575	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,73:32:74:0.986:2	0/1:0,31:31:31:1.00:2	./.	./.	./.	./.	./.	./.	0/1:39,34:33:73:0.466:2	./.	./.
chr1	67242087	rs3816989	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,75:32:76:0.987:2	0/1:0,40:31:40:1.00:2	./.	./.	./.	./.	./.	./.	0/1:40,44:32:84:0.524:2	./.	./.
chr1	67243024	rs2133173	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,27:31:83:0.325:2	0/1:1,97:31:98:0.990:2	./.	./.	./.	./.	0/1:58,51:32:109:0.468:2
chr1	67266756	rs549148	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:33:51:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,9:32:9:1.00:2	0/1:2,50:33:52:0.962:2	0/1:32,23:32:55:0.418:2	./.	0/1:40,20:33:60:0.333:2	0/1:0,38:33:38:1.00:2	0/1:45,24:33:69:0.348:2	0/1:0,37:33:37:1.00:2	0/1:0,69:33:69:1.00:2
chr1	67288045	rs482082	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,23:33:56:0.411:2	0/1:14,15:32:29:0.517:2	./.	0/1:27,38:33:65:0.585:2	0/1:0,49:31:49:1.00:2	0/1:1,64:32:65:0.985:2	0/1:21,21:32:42:0.500:2	0/1:25,25:31:50:0.500:2	0/1:0,65:33:65:1.00:2	0/1:0,43:33:43:1.00:2	0/1:31,45:33:76:0.592:2
chr1	67313249	rs57010209	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,23:31:55:0.418:2	./.	./.	0/1:42,29:32:71:0.408:2	./.	./.
chr1	67356917	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:32:79:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	67356918	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:32:80:0.050:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	67390416	rs3008858	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:30:43:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,96:31:96:1.00:2	0/1:0,81:30:81:1.00:2	0/1:0,88:31:88:1.00:2	0/1:0,75:30:75:1.00:2	0/1:50,46:31:96:0.479:2	0/1:37,41:31:78:0.526:2	0/1:0,73:29:73:1.00:2	0/1:45,38:29:83:0.458:2
chr1	67390468	rs1886686	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:30:28:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,39:32:40:1.00:2	0/1:27,34:32:61:0.557:2	0/1:21,25:33:46:0.543:2	0/1:0,36:33:36:1.00:2	0/1:42,22:31:64:0.344:2
chr1	67518534	rs10157422	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,45:31:86:0.523:2	./.	./.	./.	./.	./.	./.	./.
chr1	67558739	rs6588237	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:32:68:1.00:2	0/1:1,38:31:39:0.974:2	0/1:0,6:30:6:1.00:2	0/1:1,77:31:78:0.987:2	0/1:0,43:30:43:1.00:2	0/1:0,83:31:83:1.00:2	0/1:37,22:31:59:0.373:2	0/1:0,61:30:61:1.00:2	0/1:50,45:30:96:0.474:2	0/1:0,54:32:54:1.00:2	0/1:0,132:32:133:1.00:2
chr1	67558790	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,5:27:200:0.025:2
chr1	67559023	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:31:137:0.029:2
chr1	67560956	rs11208997	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,158:32:158:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,16:31:16:1.00:2	0/1:1,180:32:181:0.994:2	0/1:1,116:31:117:0.991:2	0/1:0,160:31:160:1.00:2	0/1:93,84:31:177:0.475:2	0/1:0,188:32:188:1.00:2	0/1:89,102:32:191:0.534:2	0/1:0,149:31:149:1.00:2	0/1:0,192:32:192:1.00:2
chr1	67633812	rs1884444	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,38:31:79:0.481:2	0/1:25,32:32:57:0.561:2	0/1:4,8:31:12:0.667:2	0/1:0,99:31:99:1.00:2	0/1:0,97:31:97:1.00:2	0/1:0,118:30:118:1.00:2	./.	./.	./.	0/1:0,87:32:87:1.00:2	0/1:52,78:32:130:0.600:2
chr1	67635262	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:32:74:0.054:2	./.	./.	./.
chr1	67685364	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,15:32:31:0.484:2	0/1:19,7:31:26:0.269:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	67685387	rs7530511	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:29:29:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,8:27:8:1.00:2	0/1:0,67:29:67:1.00:2	0/1:0,16:28:16:1.00:2	0/1:0,59:29:59:1.00:2	0/1:0,15:27:15:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,48:29:48:1.00:2	0/1:0,67:28:67:1.00:2
chr1	67792499	rs17129792	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,7:32:9:0.778:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	67795319	rs1495963	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:30:61:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,105:30:105:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,76:30:76:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,60:29:60:1.00:2	0/1:0,77:31:77:1.00:2	0/1:0,55:29:55:1.00:2	0/1:0,74:29:74:1.00:2
chr1	67833527	rs2307145	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,54:30:94:0.574:2	./.	./.	./.	./.	./.
chr1	67833643	rs2307153	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,26:29:51:0.510:2	./.	./.	./.	./.	./.	./.
chr1	67852335	rs2228420	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:81,75:31:156:0.481:2	0/1:57,36:31:93:0.387:2	./.	0/1:76,59:31:135:0.437:2	0/1:1,128:31:130:0.992:2	0/1:79,54:31:133:0.406:2	./.	0/1:69,55:31:124:0.444:2	0/1:1,124:32:125:0.992:2	0/1:0,142:32:142:1.00:2	0/1:0,131:32:131:1.00:2
chr1	67861348	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,29:32:64:0.460:2	./.	./.	./.	./.	./.
chr1	67861520	rs2229546	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,34:32:63:0.540:2	0/1:18,10:32:28:0.357:2	./.	0/1:40,35:32:75:0.467:2	0/1:0,60:32:60:1.00:2	0/1:0,72:32:72:1.00:2	0/1:55,54:32:109:0.495:2	0/1:1,83:33:84:0.988:2	0/1:0,72:32:72:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,67:31:67:1.00:2
chr1	67878898	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:33:196:0.020:2	./.	./.	./.
chr1	67891911	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:128,8:31:136:0.059:2	./.	./.	./.	./.	./.	./.	./.
chr1	67891922	rs147465839	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:32:141:0.029:2	./.	./.	./.
chr1	68512441	rs61736596	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:51,42:32:93:0.452:2	0/1:32,30:33:62:0.484:2	./.	./.	./.	./.	./.	0/1:52,55:32:107:0.514:2	0/1:48,74:34:122:0.607:2	./.	./.
chr1	68512899	rs35600387	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:14,20:30:34:0.588:2	0/1:13,14:31:27:0.519:2	./.	./.	./.	./.	./.	0/1:34,34:31:68:0.500:2	0/1:21,30:30:51:0.588:2	./.	./.
chr1	68603586	rs983034	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:48,29:31:78:0.377:2	0/1:25,24:31:49:0.490:2	./.	0/1:46,52:31:98:0.531:2	./.	0/1:61,65:30:126:0.516:2	0/1:7,107:31:114:0.939:2	./.	0/1:60,59:32:119:0.496:2	./.	./.
chr1	68614320	rs17130529	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,35:31:76:0.461:2	./.	./.	./.
chr1	68624878	rs3748705	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:42,32:31:74:0.432:2	0/1:26,15:32:41:0.366:2	0/1:2,6:32:8:0.750:2	./.	0/1:0,69:32:69:1.00:2	./.	./.	0/1:71,48:31:119:0.403:2	0/1:61,45:33:107:0.425:2	0/1:51,38:32:90:0.427:2	0/1:49,32:33:81:0.395:2
chr1	68649258	rs147113488	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,14:29:32:0.438:2	./.	./.	./.
chr1	68903942	rs12145904	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,11:31:24:0.458:2	0/1:27,27:31:54:0.500:2	./.	./.	./.	./.	./.
chr1	68904671	rs61752905	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:31:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	68944633	rs12759438	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,38:32:118:0.322:2	./.	./.	0/1:62,38:32:100:0.380:2	./.	./.	./.	./.
chr1	68944964	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:31:132:0.030:2
chr1	68954178	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,4:31:74:0.054:2	./.	./.	0/1:76,6:32:82:0.073:2	./.	./.	./.
chr1	68960177	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:145,5:33:150:0.033:2	./.	./.	./.	./.	0/1:149,4:31:153:0.026:2	./.	./.	./.	./.
chr1	68960179	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:147,5:32:152:0.033:2	./.	./.	./.	./.	0/1:151,4:31:155:0.026:2	./.	./.	./.	./.
chr1	68960278	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:179,5:33:184:0.027:2	./.	./.	./.	./.	./.	./.
chr1	70034372	rs1773351	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:1,4:33:5:0.800:2	./.	./.	./.	./.	0/1:0,12:33:12:1.00:2	0/1:0,4:32:4:1.00:2	./.	./.	./.
chr1	70397192	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:126,4:31:130:0.031:2	./.	./.	./.	./.	./.	./.
chr1	70397245	rs140920935	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,4:32:62:0.065:2	./.	./.	./.	./.	./.	./.
chr1	70460238	rs12035355	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,17:34:32:0.531:2	./.	./.
chr1	70504932	rs199521356	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:20,4:25:24:0.167:2	./.	./.	./.	./.	./.	./.	0/1:15,6:17:21:0.286:2	./.	0/1:17,7:18:24:0.292:2	0/1:19,6:24:25:0.240:2
chr1	70573459	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:87,4:31:91:0.044:2	./.	./.	./.	./.	./.	./.
chr1	70625069	rs17266340	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,89:32:200:0.445:2	./.	./.
chr1	70820008	rs61782675	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,15:32:27:0.556:2	./.	./.	./.	./.
chr1	70820880	rs55863806	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,14:32:30:0.467:2	./.	./.	./.	./.
chr1	70832181	rs371348009	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,15:31:28:0.536:2	./.	./.	./.	./.	./.	./.
chr1	70904800	rs1021737	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,37:31:70:0.529:2	0/1:71,53:31:124:0.427:2	./.	./.	./.	0/1:72,40:32:112:0.357:2	./.
chr1	71331430	rs5702	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:29,41:33:70:0.586:2	0/1:34,20:33:54:0.370:2	./.	./.	./.	./.	0/1:3,76:33:79:0.962:2	./.	./.	0/1:1,73:33:74:0.986:2	./.
chr1	71331498	rs1409986	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,32:32:32:1.00:2	0/1:0,26:31:26:1.00:2	./.	0/1:0,23:32:23:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,31:32:32:1.00:2
chr1	71419499	rs571705	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,14:33:14:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,5:32:5:1.00:2	./.	0/1:4,3:31:7:0.429:2	0/1:0,10:30:10:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,12:30:12:1.00:2	0/1:20,10:32:30:0.333:2
chr1	71512639	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,8:15:27:0.296:2	./.	./.	0/1:48,11:17:59:0.186:2	./.	./.	./.	0/1:31,4:26:35:0.114:2
chr1	71512643	rs5671	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,33:31:50:0.660:2	./.	./.	./.	./.	./.	./.
chr1	71513150	rs5669	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:32:13:0.538:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	71513218	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,18:11:105:0.171:2	./.	0/1:91,21:14:112:0.188:2	./.	./.	./.
chr1	71536549	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:31:64:0.063:2	./.
chr1	71536574	rs11583800	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,4:31:13:0.308:2	0/1:30,18:33:48:0.375:2	./.	./.	./.	0/1:48,30:32:78:0.385:2	./.	./.	./.
chr1	71538191	rs11556475	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,45:32:102:0.441:2	./.	./.	./.	./.	./.	./.
chr1	71544332	rs74090254	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:33:10:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	72058552	rs1413368	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,111:33:111:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,151:32:151:1.00:2	0/1:1,194:31:195:0.995:2	0/1:0,189:32:189:1.00:2	0/1:1,164:32:165:0.994:2	0/1:0,159:32:159:1.00:2	0/1:0,160:33:160:1.00:2	0/1:0,114:32:114:1.00:2	0/1:0,141:32:141:1.00:2
chr1	74507284	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:33:172:0.023:2	./.	./.	./.
chr1	74575182	rs1340472	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:32:33:1.00:2	0/1:0,18:31:18:1.00:2	0/1:3,8:31:11:0.727:2	0/1:0,41:31:41:1.00:2	0/1:27,5:31:32:0.156:2	0/1:0,40:31:40:1.00:2	0/1:0,13:32:13:1.00:2	0/1:37,13:32:50:0.260:2	0/1:0,69:32:69:1.00:2	0/1:0,33:32:33:1.00:2	./.
chr1	74575201	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,29:30:59:0.492:2	./.	./.
chr1	74648329	rs17591320	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,25:30:53:0.472:2	./.	./.	./.	./.	./.	./.	./.
chr1	74665493	rs792310	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,53:33:53:1.00:2	0/1:0,14:31:14:1.00:2	./.	0/1:1,50:32:51:0.980:2	./.	0/1:32,19:30:51:0.373:2	0/1:0,23:32:23:1.00:2	0/1:28,23:30:51:0.451:2	./.	0/1:0,22:32:22:1.00:2	./.
chr1	74670172	rs12046751	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,20:33:39:0.513:2	0/1:32,23:32:55:0.418:2	./.	./.	0/1:0,66:34:66:1.00:2	./.	./.
chr1	74808801	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,91:32:193:0.472:2
chr1	74819712	rs142183632	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,88:32:183:0.484:2	./.	./.	./.	./.	./.	./.
chr1	74901829	rs45589143	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,86:33:167:0.515:2	./.	./.
chr1	74941060	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,26:32:44:0.591:2	./.	./.	./.	./.	./.	./.
chr1	74941210	rs648614	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,38:33:95:0.400:2	0/1:79,71:33:150:0.473:2	0/1:91,67:33:158:0.424:2	0/1:2,95:33:97:0.979:2	0/1:100,77:33:177:0.435:2
chr1	74941293	rs649058	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:143,4:32:147:0.027:2	./.	./.	./.	./.	0/1:112,82:32:195:0.423:2	0/1:81,116:31:197:0.589:2	0/1:107,85:32:192:0.443:2	0/1:0,186:32:186:1.00:2	0/1:107,78:32:185:0.422:2
chr1	74954952	rs142942027	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,23:33:51:0.451:2	./.	./.	./.	./.
chr1	75036812	rs9326116	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:32:28:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,44:32:44:1.00:2	0/1:1,21:32:22:0.955:2	0/1:0,32:32:32:1.00:2
chr1	75036881	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:30:115:0.035:2	./.	./.	./.
chr1	75037845	rs12723334	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,73:31:138:0.529:2	0/1:42,31:30:73:0.425:2	0/1:10,6:30:16:0.375:2	0/1:1,130:31:131:0.992:2	0/1:92,58:30:150:0.387:2	0/1:87,60:30:147:0.408:2	./.	0/1:108,68:30:176:0.386:2	./.	./.	0/1:4,154:30:158:0.975:2
chr1	75038228	rs11580409	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,66:32:128:0.516:2	0/1:30,66:32:96:0.688:2	0/1:3,11:33:14:0.786:2	0/1:0,178:33:178:1.00:2	0/1:43,42:32:85:0.494:2	0/1:71,72:32:143:0.503:2	0/1:104,4:31:108:0.037:2	0/1:74,91:32:165:0.552:2	./.	./.	0/1:1,182:33:183:0.995:2
chr1	75038964	rs41289214	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,32:32:57:0.561:2	./.	./.
chr1	75055749	rs115339919	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:31:76:0.053:2	./.	./.	./.	./.
chr1	75065441	rs696698	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,96:33:194:0.495:2	./.	./.
chr1	75097426	rs11210490	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:104,95:32:199:0.477:2	0/1:59,54:32:113:0.478:2	0/1:15,5:32:20:0.250:2	0/1:96,102:33:198:0.515:2	0/1:62,84:32:146:0.575:2	0/1:114,77:32:191:0.403:2	0/1:3,169:32:172:0.983:2	0/1:109,82:32:191:0.429:2	0/1:107,90:33:199:0.457:2	0/1:3,195:33:198:0.985:2	./.
chr1	75097574	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,5:28:167:0.030:2	./.
chr1	75172001	rs7527057	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,58:31:109:0.532:2	0/1:27,28:30:55:0.509:2	0/1:9,9:30:18:0.500:2	0/1:55,55:30:110:0.500:2	0/1:41,45:29:86:0.523:2	0/1:55,41:30:96:0.427:2	./.	0/1:3,94:30:97:0.969:2	0/1:0,79:31:79:1.00:2	0/1:35,37:31:72:0.514:2	0/1:80,64:30:144:0.444:2
chr1	75175797	rs57413593	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,7:31:16:0.438:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	75175886	rs3819946	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,64:32:119:0.542:2	0/1:44,44:32:88:0.500:2	0/1:61,50:32:111:0.450:2	./.	0/1:109,4:32:113:0.035:2	./.	./.	./.
chr1	75185037	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,31:31:50:0.620:2	./.	./.	./.	./.	./.
chr1	75190452	rs1051122	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,122:31:122:1.00:2	0/1:1,72:31:73:0.986:2	0/1:1,12:31:13:0.923:2	0/1:0,141:31:141:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,149:31:149:1.00:2	0/1:1,100:32:101:0.990:2	0/1:0,144:31:144:1.00:2	0/1:90,79:31:169:0.467:2	0/1:3,119:32:122:0.975:2	0/1:2,186:31:188:0.989:2
chr1	75199023	rs143670067	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,65:29:129:0.504:2	./.	./.	./.
chr1	75204447	rs11538281	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	75214441	rs1133891	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,83:30:179:0.464:2	0/1:80,45:30:125:0.360:2	0/1:104,73:29:177:0.412:2	./.	./.	./.	./.	./.
chr1	75217990	rs61741065	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:33:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	75596388	rs41289234	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:25,20:32:45:0.444:2	0/1:24,11:31:35:0.314:2	./.	./.	./.	./.	./.	./.	./.	0/1:33,22:33:55:0.400:2	0/1:43,43:32:86:0.500:2
chr1	75608973	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:34:46:0.087:2	./.	./.	./.	./.	./.
chr1	75622616	rs941032	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,46:31:105:0.438:2	0/1:81,38:31:119:0.319:2	0/1:0,85:31:85:1.00:2	0/1:52,80:32:132:0.606:2	0/1:66,70:32:136:0.515:2	0/1:66,48:32:114:0.421:2	./.	./.
chr1	75672376	rs1948874	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:40,37:32:77:0.481:2	0/1:23,19:32:42:0.452:2	./.	./.	./.	./.	0/1:35,26:32:61:0.426:2	0/1:0,68:32:68:1.00:2	0/1:39,48:33:87:0.552:2	./.	0/1:2,96:32:98:0.980:2
chr1	75681511	rs595009	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,151:33:151:1.00:2	0/1:0,86:32:86:1.00:2	0/1:6,6:33:12:0.500:2	0/1:106,72:32:178:0.404:2	0/1:47,67:32:114:0.588:2	0/1:3,170:32:173:0.983:2	0/1:0,88:32:88:1.00:2	0/1:0,162:32:162:1.00:2	0/1:0,178:34:178:1.00:2	0/1:73,75:33:149:0.507:2	0/1:0,178:33:178:1.00:2
chr1	75693460	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:31:100:0.040:2	./.
chr1	75699771	rs10493565	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:41,25:32:66:0.379:2	0/1:23,13:30:36:0.361:2	./.	./.	0/1:26,16:31:42:0.381:2	0/1:34,39:30:74:0.534:2	0/1:36,30:31:66:0.455:2	./.	0/1:45,29:32:74:0.392:2	0/1:49,25:31:74:0.338:2	./.
chr1	75702674	rs17096508	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,58:30:142:0.408:2	0/1:118,78:30:196:0.398:2	0/1:107,68:30:175:0.389:2	./.	0/1:103,92:32:195:0.472:2	./.	./.
chr1	75716925	rs588098	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,36:31:107:0.336:2	0/1:12,33:31:45:0.733:2	0/1:5,9:30:14:0.643:2	0/1:0,94:30:94:1.00:2	0/1:50,29:29:79:0.367:2	0/1:76,47:30:123:0.382:2	0/1:68,51:30:119:0.429:2	0/1:0,146:30:146:1.00:2	0/1:73,53:31:126:0.421:2	0/1:55,63:31:118:0.534:2	0/1:0,90:30:90:1.00:2
chr1	76198785	rs3818855	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,72:32:171:0.421:2	./.	./.	0/1:95,83:31:178:0.466:2	0/1:115,81:31:196:0.413:2	./.	0/1:121,72:32:193:0.373:2	./.
chr1	76211574	rs149678400	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,9:31:28:0.321:2	./.	./.	./.	./.	./.	./.	./.
chr1	76227022	rs1061337	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,24:32:53:0.453:2	./.	./.	0/1:14,26:33:40:0.650:2	0/1:33,25:31:58:0.431:2	./.	0/1:20,23:32:43:0.535:2	./.
chr1	76257892	rs12703	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,51:33:51:1.00:2	0/1:0,26:32:26:1.00:2	./.	0/1:0,46:32:46:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,63:33:63:1.00:2	0/1:47,33:32:80:0.413:2	0/1:0,69:32:69:1.00:2
chr1	76269460	rs5745325	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:30,23:31:53:0.434:2	0/1:23,17:31:40:0.425:2	0/1:1,3:30:4:0.750:2	./.	./.	0/1:31,39:30:70:0.557:2	./.	./.	0/1:35,38:31:73:0.521:2	./.	0/1:46,34:31:80:0.425:2
chr1	76344705	rs5745448	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,29:33:44:0.659:2	0/1:6,17:31:23:0.739:2	0/1:29,17:33:46:0.370:2	0/1:25,13:32:38:0.342:2	./.	0/1:24,19:33:43:0.442:2	./.	0/1:19,40:32:59:0.678:2
chr1	76344711	rs5745449	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:31:35:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,4:31:4:1.00:2	0/1:18,31:31:49:0.633:2	0/1:0,23:31:23:1.00:2	0/1:0,46:31:46:1.00:2	0/1:22,19:32:41:0.463:2	0/1:18,20:31:38:0.526:2	0/1:0,44:33:44:1.00:2	0/1:14,12:32:26:0.462:2	0/1:0,62:32:62:1.00:2
chr1	76378502	rs5745549	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:21,22:32:43:0.512:2	0/1:15,10:31:25:0.400:2	./.	./.	0/1:17,12:30:29:0.414:2	./.	./.	0/1:22,38:31:60:0.633:2	./.	./.	./.
chr1	76384669	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,6:31:85:0.071:2	./.	./.	./.	./.	./.
chr1	76397719	rs182689417	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,27:32:72:0.375:2	./.	./.	./.	./.
chr1	76397972	rs3795251	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,12:32:23:0.522:2	0/1:8,8:32:16:0.500:2	0/1:11,13:31:24:0.542:2	0/1:13,9:31:22:0.409:2	./.	0/1:11,4:33:15:0.267:2	./.	0/1:20,13:31:33:0.394:2
chr1	77042567	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,54:30:109:0.500:2	0/1:23,25:31:48:0.521:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	77093180	rs1184626	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:52,49:32:101:0.485:2	0/1:33,23:32:56:0.411:2	0/1:0,17:31:17:1.00:2	./.	0/1:64,71:31:135:0.526:2	./.	0/1:68,49:32:117:0.419:2	0/1:58,64:32:122:0.525:2	0/1:3,151:33:154:0.981:2	0/1:49,56:32:105:0.533:2	0/1:1,108:32:109:0.991:2
chr1	77333355	rs76305167	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,42:30:86:0.494:2	./.	./.	./.	./.
chr1	77334268	rs114586767	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,55:29:81:0.679:2	./.	./.	./.	./.
chr1	77528805	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:32:61:0.066:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	77558145	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:32:51:0.078:2	./.	./.	./.
chr1	77634948	rs1779199	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:32:31:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,47:32:47:1.00:2
chr1	77759578	rs2815311	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,41:28:79:0.519:2	0/1:53,53:29:106:0.500:2	./.	./.	./.
chr1	77763542	rs1167206	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:31:33:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,38:31:38:1.00:2
chr1	77883412	rs1532507	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,5:32:11:0.455:2	./.	0/1:5,6:32:11:0.545:2	./.	./.
chr1	78024284	rs6675743	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:36,22:32:58:0.379:2	0/1:28,15:32:43:0.349:2	./.	./.	0/1:0,30:31:30:1.00:2	0/1:37,22:32:59:0.373:2	0/1:2,39:32:41:0.951:2	0/1:2,52:31:54:0.963:2	0/1:40,41:33:81:0.506:2	0/1:0,56:33:56:1.00:2	0/1:1,100:32:101:0.990:2
chr1	78097795	rs142300734	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,42:29:110:0.382:2	./.	./.	./.	./.	./.
chr1	78098003	rs41292270	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:84,81:33:165:0.491:2	0/1:60,37:32:97:0.381:2	./.	./.	./.	./.	./.	./.	./.	0/1:92,82:32:174:0.471:2	./.
chr1	78098153	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:30:59:0.068:2	./.
chr1	78098251	rs368611525	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,41:31:94:0.436:2	./.
chr1	78099027	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:31:79:0.051:2	./.	./.	./.	./.	./.
chr1	78163080	rs34351666	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:30:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	78178976	rs6603958	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,31:32:57:0.544:2	0/1:15,19:32:34:0.559:2	0/1:0,8:32:8:1.00:2	0/1:1,27:31:28:0.964:2	./.	0/1:35,27:31:62:0.435:2	0/1:16,17:32:33:0.515:2	./.	0/1:25,23:32:48:0.479:2	./.	./.
chr1	78184325	rs12142671	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,36:33:96:0.375:2	0/1:32,26:32:58:0.448:2	0/1:4,8:33:12:0.667:2	0/1:2,58:33:60:0.967:2	./.	0/1:42,30:32:72:0.417:2	0/1:31,28:32:59:0.475:2	./.	0/1:25,36:34:61:0.590:2	./.	./.
chr1	78187739	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,7:29:112:0.063:2	./.	./.
chr1	78187797	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:31:95:0.042:2	./.	./.	./.	./.
chr1	78194266	rs186381561	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,83:33:195:0.426:2	./.	./.	./.	./.	./.	./.	./.
chr1	78201745	rs2296227	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,35:32:64:0.547:2	0/1:17,22:32:39:0.564:2	0/1:0,13:32:13:1.00:2	0/1:0,73:31:73:1.00:2	0/1:73,4:32:77:0.052:2	0/1:45,42:31:87:0.483:2	0/1:38,11:32:49:0.224:2	./.	0/1:47,35:32:82:0.427:2	./.	./.
chr1	78332017	rs189491314	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,5:33:21:0.238:2	./.	./.	./.	./.
chr1	78383874	rs35117963	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	78392446	rs1166698	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,17:32:43:0.395:2	0/1:37,36:32:73:0.493:2	0/1:25,35:33:60:0.583:2	0/1:1,51:32:52:0.981:2	./.	0/1:25,25:32:50:0.500:2	0/1:62,34:32:96:0.354:2
chr1	78407854	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:34:115:0.035:2
chr1	78429765	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:32:170:0.024:2	./.	./.
chr1	78585086	rs540742	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:26,17:31:43:0.395:2	0/1:11,14:30:25:0.560:2	0/1:0,12:28:12:1.00:2	./.	0/1:16,17:30:33:0.515:2	0/1:0,43:30:43:1.00:2	./.	0/1:1,45:30:46:0.978:2	./.	0/1:22,27:30:49:0.551:2	./.
chr1	78958491	rs35227129	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,28:33:65:0.431:2	./.	./.	0/1:38,22:31:60:0.367:2	0/1:27,36:31:63:0.571:2	./.	./.	./.
chr1	79093818	rs273259	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:18,16:31:34:0.471:2	0/1:21,14:30:35:0.400:2	./.	./.	0/1:19,22:29:41:0.537:2	./.	0/1:18,23:29:41:0.561:2	./.	0/1:0,59:30:59:1.00:2	0/1:31,15:31:46:0.326:2	./.
chr1	79095526	rs3820093	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,11:30:24:0.458:2	./.	./.	./.	./.	./.	./.
chr1	79095581	rs987495	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:19,20:33:39:0.513:2	0/1:13,17:31:30:0.567:2	./.	./.	./.	./.	0/1:21,4:33:25:0.160:2	./.	0/1:1,47:32:48:0.979:2	0/1:22,15:32:37:0.405:2	./.
chr1	79095682	rs185745103	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,14:30:24:0.583:2	./.	./.	./.	./.	./.	./.
chr1	79101163	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,4:32:57:0.071:2	./.	./.	./.	./.	./.	./.	./.
chr1	79357360	rs2275902	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,33:31:33:1.00:2	0/1:0,25:32:25:1.00:2	./.	0/1:12,27:31:39:0.692:2	./.	0/1:21,29:31:50:0.580:2	./.	0/1:18,27:31:45:0.600:2	0/1:13,8:34:21:0.381:2	./.	./.
chr1	79392625	rs188452531	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:32:9:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	79392756	rs12754818	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:31:6:1.00:2	0/1:23,18:32:41:0.439:2	0/1:0,29:31:29:1.00:2	0/1:43,16:31:59:0.271:2	0/1:16,10:32:26:0.385:2	0/1:25,21:32:46:0.457:2	0/1:40,17:30:57:0.298:2	0/1:26,13:32:39:0.333:2	0/1:23,19:31:42:0.452:2
chr1	79404913	rs186323604	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,56:32:122:0.463:2	./.	./.	./.	./.	./.
chr1	82409373	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:31:138:0.029:2	./.
chr1	82415982	rs138125465	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,26:32:62:0.419:2	./.
chr1	82416019	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:33:57:0.070:2	./.	./.
chr1	82417696	rs141619218	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,30:34:66:0.455:2	0/1:24,18:32:42:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	82417719	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:114,5:32:119:0.042:2	./.	./.	./.	./.	./.	./.
chr1	82417739	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:31:92:0.043:2	./.
chr1	82421596	rs11163397	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,105:33:105:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,93:33:93:1.00:2	0/1:0,132:33:132:1.00:2	0/1:0,99:33:99:1.00:2	0/1:0,109:33:109:1.00:2	0/1:0,142:33:142:1.00:2
chr1	82433819	rs145464208	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,42:32:100:0.420:2	./.	./.	./.	./.
chr1	82450365	rs41292982	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,38:32:77:0.494:2	./.
chr1	82453022	rs76995529	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,29:32:88:0.330:2	./.	./.	./.
chr1	82456585	rs41292984	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:39,37:32:76:0.487:2	0/1:20,20:32:40:0.500:2	./.	./.	0/1:30,22:31:52:0.423:2	./.	./.	./.	./.	./.	./.
chr1	84640691	rs582201	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,120:33:120:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,160:33:160:1.00:2	0/1:0,73:31:73:1.00:2	0/1:0,172:32:172:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,136:32:136:1.00:2	0/1:1,177:33:178:0.994:2	0/1:1,167:32:168:0.994:2	0/1:0,170:33:170:1.00:2
chr1	84765360	rs1625305	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.
chr1	84791374	rs55638637	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,72:31:165:0.436:2	0/1:53,56:32:109:0.514:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	84864256	rs3738573	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:27,33:32:60:0.550:2	0/1:21,9:32:30:0.300:2	./.	./.	./.	./.	0/1:39,38:32:77:0.494:2	0/1:48,25:32:73:0.342:2	0/1:29,37:33:66:0.561:2	0/1:14,27:32:41:0.659:2	0/1:35,29:31:66:0.453:2
chr1	84867610	rs3754274	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,5:31:25:0.200:2	./.	./.	0/1:20,28:32:48:0.583:2	./.
chr1	84878228	rs7511984	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,5:32:11:0.455:2	./.	./.	0/1:5,7:32:12:0.583:2	./.	./.	./.
chr1	84880380	rs3768250	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:84,44:30:128:0.344:2	0/1:41,31:28:72:0.431:2	./.	./.	./.	./.	0/1:68,47:30:115:0.409:2	./.	./.	0/1:77,61:30:138:0.442:2	./.
chr1	84944989	rs2292191	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,15:30:28:0.536:2	0/1:6,11:29:17:0.647:2	0/1:2,5:29:7:0.714:2	0/1:28,17:30:45:0.378:2	0/1:0,47:29:47:1.00:2	0/1:16,16:30:34:0.500:2	0/1:33,17:30:50:0.340:2	0/1:1,37:30:38:0.974:2	0/1:26,32:30:58:0.552:2	./.	./.
chr1	84961108	rs7528067	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:31,35:32:66:0.530:2	0/1:17,21:31:38:0.553:2	./.	./.	./.	./.	0/1:9,16:29:25:0.640:2	./.	./.	./.	./.
chr1	84982061	rs375737896	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,16:32:47:0.340:2	0/1:20,11:32:31:0.355:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	84991669	rs10493753	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:66,41:33:107:0.383:2	0/1:37,20:32:57:0.351:2	./.	./.	./.	./.	0/1:30,17:33:47:0.362:2	./.	./.	./.	./.
chr1	84999411	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,4:31:42:0.095:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	85009894	rs12143652	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,6:33:13:0.462:2	0/1:45,43:33:88:0.489:2	./.	0/1:47,48:32:95:0.505:2	./.	./.	0/1:47,49:34:96:0.510:2	0/1:1,91:32:92:0.989:2	0/1:62,39:33:101:0.386:2
chr1	85014628	rs184975244	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,44:30:82:0.537:2	0/1:23,19:31:42:0.452:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	85016177	rs1400777	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,68:32:137:0.496:2	0/1:51,39:31:90:0.433:2	0/1:11,15:32:26:0.577:2	0/1:109,68:33:177:0.384:2	./.	0/1:79,68:32:147:0.463:2	0/1:64,41:32:105:0.390:2	./.	0/1:81,99:34:180:0.550:2	0/1:1,123:33:125:0.992:2	0/1:1,176:33:179:0.994:2
chr1	85020769	rs138861244	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,47:32:109:0.431:2	0/1:33,29:32:62:0.468:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	85029077	rs15911	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:31:10:0.400:2	0/1:34,22:31:56:0.393:2	./.	0/1:31,22:31:53:0.415:2	./.	./.	0/1:35,37:32:72:0.514:2	0/1:0,41:31:41:1.00:2	0/1:38,23:32:61:0.377:2
chr1	85029432	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:197:0.020:2
chr1	85031630	rs2994953	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,20:31:31:0.645:2	0/1:67,60:32:128:0.472:2	./.	0/1:95,54:31:149:0.362:2	./.	./.	0/1:92,48:32:140:0.343:2	0/1:0,142:32:142:1.00:2	0/1:67,67:31:134:0.500:2
chr1	85039955	rs2303307	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:30:10:0.500:2	0/1:41,24:29:65:0.369:2	./.	0/1:35,34:29:69:0.493:2	./.	./.	0/1:30,43:30:73:0.589:2	0/1:0,66:30:66:1.00:2	0/1:42,28:30:70:0.400:2
chr1	85040069	rs2911592	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:30:6:1.00:2	./.	0/1:4,4:31:8:0.500:2	./.	./.	0/1:4,3:30:7:0.429:2	0/1:0,12:28:12:1.00:2	./.
chr1	85040070	rs115347546	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:31:6:1.00:2	./.	0/1:4,4:32:8:0.500:2	./.	./.	0/1:4,3:31:7:0.429:2	0/1:0,12:31:12:1.00:2	./.
chr1	85113203	rs2994949	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,92:30:180:0.511:2	0/1:61,54:29:115:0.470:2	0/1:0,30:30:30:1.00:2	0/1:0,185:30:185:1.00:2	0/1:113,62:29:175:0.354:2	0/1:93,97:30:190:0.511:2	0/1:0,137:29:137:1.00:2	0/1:3,172:29:175:0.983:2	0/1:0,175:30:175:1.00:2	0/1:1,154:30:155:0.994:2	0/1:2,178:30:180:0.989:2
chr1	85113229	rs1057746	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:99,93:30:192:0.484:2	0/1:61,46:29:107:0.430:2	0/1:0,30:30:30:1.00:2	0/1:118,66:30:184:0.359:2	0/1:101,61:29:162:0.377:2	./.	0/1:68,79:29:147:0.537:2	0/1:0,162:30:162:1.00:2	0/1:0,164:31:164:1.00:2	0/1:80,86:30:166:0.518:2	0/1:1,177:30:178:0.994:2
chr1	85486765	rs12123273	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,21:31:40:0.525:2	./.	./.	./.	./.	./.
chr1	85488030	rs2028304	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,145:32:145:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,147:31:147:1.00:2	0/1:70,39:31:109:0.358:2	0/1:0,141:31:141:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,127:32:127:1.00:2	0/1:0,164:33:164:1.00:2	0/1:0,121:32:121:1.00:2	0/1:90,69:32:159:0.434:2
chr1	85498642	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,4:29:39:0.103:2	./.	./.	./.	./.	./.	./.
chr1	85537706	rs17099213	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,8:33:33:0.242:2	./.	./.	./.	./.	0/1:38,10:32:48:0.208:2	./.
chr1	85550349	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:34:72:0.056:2	./.
chr1	85589842	rs17121745	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:123,74:33:197:0.376:2	./.	./.	./.	./.	./.	0/1:104,84:32:188:0.447:2	0/1:102,88:33:190:0.463:2
chr1	85592334	rs79751387	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,41:32:81:0.506:2	./.	./.	./.	./.	./.	./.	./.
chr1	85594392	rs2305930	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,27:33:53:0.509:2	./.	./.	./.	./.	./.	0/1:16,26:33:42:0.619:2	0/1:54,38:32:92:0.413:2
chr1	85594412	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,33:32:69:0.478:2	./.	./.
chr1	85594466	rs709783	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:2,84:30:86:0.977:2	0/1:2,53:31:55:0.964:2	./.	./.	0/1:52,37:30:89:0.416:2	./.	0/1:51,34:31:85:0.400:2	./.	0/1:63,66:31:129:0.512:2	0/1:53,47:31:100:0.470:2	0/1:165,5:31:171:0.029:2
chr1	85624549	rs709786	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,137:32:137:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,189:32:189:1.00:2	0/1:0,119:31:119:1.00:2	0/1:0,153:31:153:1.00:2	0/1:0,147:32:147:1.00:2	0/1:0,177:32:177:1.00:2	0/1:0,187:33:187:1.00:2	0/1:0,150:32:150:1.00:2	0/1:0,186:32:186:1.00:2
chr1	85624661	rs74980814	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,46:32:78:0.590:2	./.	./.	./.	./.	./.	./.	./.
chr1	85624864	rs817412	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:32:55:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,58:31:58:1.00:2
chr1	85634892	rs61752463	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,31:33:68:0.456:2	./.	./.	./.	./.	./.	./.	./.
chr1	85647868	rs17122989	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,48:33:93:0.516:2	./.	./.	./.	./.	./.	./.	./.
chr1	85648620	rs817443	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:32:62:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,5:27:5:1.00:2	0/1:1,61:32:62:0.984:2	0/1:0,49:31:49:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,82:32:82:1.00:2
chr1	85655916	rs56191061	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,48:30:125:0.384:2	./.	./.	./.	./.	./.	0/1:67,46:31:113:0.407:2	./.
chr1	85655931	rs61756695	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,65:32:111:0.586:2	./.	./.	./.	./.	./.	./.	./.
chr1	85666156	rs12121540	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:31,28:31:59:0.475:2	0/1:6,15:31:21:0.714:2	./.	0/1:25,19:30:44:0.432:2	./.	0/1:23,19:31:42:0.452:2	./.	./.	./.	./.	./.
chr1	85724283	rs75989026	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,52:32:100:0.520:2	./.
chr1	85724328	rs4949926	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,41:30:71:0.577:2	0/1:34,24:30:58:0.414:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:31:86:0.047:2
chr1	85725290	rs199663822	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,16:29:41:0.390:2
chr1	85733374	rs3768235	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,20:31:47:0.426:2	./.	./.	./.	./.	./.
chr1	85742012	rs11576939	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:36,23:31:59:0.390:2	0/1:23,12:32:35:0.343:2	./.	./.	./.	./.	0/1:56,35:32:91:0.385:2	0/1:49,28:32:77:0.364:2	0/1:35,41:33:76:0.539:2	0/1:46,33:32:79:0.418:2	0/1:0,51:32:51:1.00:2
chr1	85742023	rs12037217	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,43:32:73:0.589:2	./.
chr1	85790450	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:30:87:0.046:2
chr1	85816134	rs2230820	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	0/1:3,115:29:118:0.975:2	0/1:70,56:30:126:0.444:2	./.	./.	./.	./.	0/1:53,54:30:107:0.505:2
chr1	85824504	rs144734620	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,41:34:80:0.513:2	./.	./.
chr1	86047695	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:32:103:0.039:2	./.	./.	./.	./.	./.
chr1	86047909	rs9658586	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,27:30:65:0.415:2
chr1	86171959	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:31:139:0.029:2	./.	./.	./.	./.
chr1	86173943	rs17399721	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,13:30:30:0.433:2	./.	0/1:15,6:27:21:0.286:2	./.	./.	./.	./.	./.
chr1	86203145	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:31:122:0.033:2	./.	./.
chr1	86210411	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,5:28:107:0.047:2	0/1:147,8:22:155:0.052:2	./.	./.	./.	./.	0/1:185,7:23:192:0.036:2
chr1	86361588	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:34:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	86375654	rs1502657	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,8:31:32:0.250:2	0/1:0,25:32:25:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,28:32:28:1.00:2	0/1:2,35:33:37:0.946:2	0/1:20,20:33:40:0.500:2	0/1:0,23:32:23:1.00:2	0/1:0,42:32:42:1.00:2
chr1	86487914	rs11161721	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,11:31:19:0.579:2	./.	0/1:2,136:30:138:0.986:2	0/1:113,66:30:179:0.369:2	0/1:115,65:31:180:0.361:2	./.	0/1:0,164:31:164:1.00:2	0/1:78,47:31:125:0.376:2	0/1:3,148:31:151:0.980:2
chr1	86487981	rs516213	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,57:32:114:0.500:2	0/1:33,32:32:65:0.492:2	0/1:8,7:32:15:0.467:2	0/1:0,84:31:84:1.00:2	0/1:0,62:31:62:1.00:2	0/1:66,46:31:112:0.411:2	0/1:0,57:31:57:1.00:2	0/1:72,47:31:119:0.395:2	0/1:0,92:32:92:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,109:32:109:1.00:2
chr1	86488232	rs641712	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,86:32:88:0.977:2	./.	./.	0/1:68,41:31:109:0.376:2	0/1:90,46:31:136:0.338:2	./.	0/1:43,25:32:68:0.368:2	./.
chr1	86512536	rs60891279	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:31:15:0.400:2	./.	./.	./.	0/1:24,15:30:39:0.385:2	./.	./.	./.	0/1:0,112:32:112:1.00:2
chr1	86529390	rs12742014	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,45:31:45:1.00:2	0/1:81,47:31:128:0.367:2	0/1:53,23:32:76:0.303:2	./.	0/1:0,106:31:106:1.00:2	0/1:61,31:32:92:0.337:2	./.
chr1	86557967	rs11161732	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,31:32:31:1.00:2	0/1:27,26:31:53:0.491:2	0/1:0,23:32:23:1.00:2	0/1:31,11:31:42:0.262:2	0/1:0,70:32:70:1.00:2	./.	0/1:1,72:32:73:0.986:2
chr1	86590582	rs80262773	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,23:32:38:0.605:2	./.	./.	./.	./.	./.	./.	./.
chr1	86590915	rs2174767	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,140:32:140:1.00:2	0/1:0,95:31:95:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,177:31:177:1.00:2	0/1:0,126:31:126:1.00:2	0/1:0,185:31:185:1.00:2	0/1:0,141:31:141:1.00:2	0/1:0,177:31:177:1.00:2	0/1:0,188:32:188:1.00:2	0/1:0,162:31:162:1.00:2	0/1:0,189:32:189:1.00:2
chr1	86590948	rs11161746	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,3:29:19:0.158:2	./.	./.	./.	./.	0/1:100,97:30:197:0.492:2	./.	./.	./.
chr1	86591036	rs56046090	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,48:31:136:0.353:2	./.	./.	./.	./.	./.	./.	./.
chr1	86591837	rs11161747	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,14:31:14:1.00:2	0/1:0,6:31:6:1.00:2	./.	0/1:1,4:31:5:0.800:2	0/1:0,9:32:9:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,16:31:16:1.00:2	0/1:4,3:31:7:0.429:2	0/1:0,15:32:15:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,11:32:11:1.00:2
chr1	86818572	rs272496	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:119,74:33:193:0.383:2	0/1:92,59:32:151:0.391:2	./.	0/1:101,91:33:192:0.474:2	0/1:105,82:32:187:0.439:2	0/1:93,96:32:189:0.508:2	0/1:4,155:33:159:0.975:2	0/1:1,191:32:192:0.995:2	0/1:2,172:34:174:0.989:2	0/1:94,92:33:186:0.495:2	0/1:105,89:33:195:0.459:2
chr1	86820267	rs1182098	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,48:32:95:0.505:2	0/1:29,30:32:59:0.508:2	0/1:3,4:31:7:0.571:2	0/1:43,64:32:107:0.598:2	0/1:29,27:31:56:0.482:2	0/1:69,71:31:140:0.507:2	0/1:2,66:31:68:0.971:2	0/1:1,117:31:118:0.992:2	0/1:2,96:33:98:0.980:2	0/1:58,51:32:109:0.468:2	0/1:80,65:32:145:0.448:2
chr1	86822231	rs385437	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,42:33:42:1.00:2	./.	./.
chr1	86824496	rs144381853	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,63:32:148:0.426:2	./.
chr1	86826169	rs12758659	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,29:32:86:0.337:2	./.
chr1	86838158	rs421105	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,37:31:67:0.552:2	0/1:15,14:32:29:0.483:2	0/1:0,6:31:6:1.00:2	0/1:38,32:31:70:0.457:2	0/1:19,27:31:46:0.587:2	0/1:42,23:31:65:0.354:2	0/1:1,28:31:29:0.966:2	0/1:0,62:31:62:1.00:2	0/1:0,64:32:64:1.00:2	0/1:25,13:30:38:0.342:2	0/1:59,28:31:87:0.322:2
chr1	86842012	rs187270155	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,109:32:184:0.592:2	./.	./.	./.	./.	./.	./.	./.
chr1	86847955	rs272516	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:39,20:32:59:0.339:2	0/1:22,13:32:35:0.371:2	./.	./.	./.	./.	./.	0/1:51,23:32:74:0.311:2	0/1:0,74:33:74:1.00:2	0/1:32,24:33:56:0.429:2	0/1:44,39:33:83:0.470:2
chr1	86852621	rs2390096	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,8:34:30:0.267:2	0/1:8,9:33:17:0.529:2	./.	0/1:34,16:32:50:0.320:2	0/1:19,8:33:27:0.296:2	0/1:25,16:30:41:0.390:2	0/1:0,18:33:18:1.00:2	0/1:16,29:32:45:0.644:2	./.	./.	./.
chr1	86891073	rs11580625	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,22:32:62:0.355:2	0/1:28,14:29:42:0.333:2	./.	./.	./.	./.	./.	./.
chr1	86900332	rs17449526	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,37:30:84:0.440:2	0/1:34,16:31:50:0.320:2	0/1:5,12:30:17:0.706:2	0/1:45,61:30:107:0.575:2	0/1:71,24:29:95:0.253:2	0/1:60,36:30:96:0.375:2	./.	./.	./.	0/1:43,47:29:90:0.522:2	0/1:56,46:30:102:0.451:2
chr1	86900372	rs17409304	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,35:34:87:0.402:2	0/1:36,18:33:54:0.333:2	0/1:8,8:33:16:0.500:2	0/1:55,44:33:99:0.444:2	0/1:71,33:33:104:0.317:2	0/1:59,49:33:108:0.454:2	./.	./.	./.	0/1:45,54:33:99:0.545:2	0/1:60,52:34:112:0.464:2
chr1	86904588	rs11161830	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,6:34:22:0.273:2	0/1:11,10:31:21:0.476:2	./.	./.	./.	./.	0/1:2,24:32:26:0.923:2	./.
chr1	86909493	rs2390059	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,5:31:11:0.455:2	0/1:51,43:30:94:0.457:2	0/1:27,25:30:52:0.481:2	./.	./.	./.	./.	0/1:2,64:30:66:0.970:2	./.
chr1	86909582	rs1413426	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,38:31:102:0.373:2	0/1:56,41:31:97:0.423:2	./.	./.	./.	./.	0/1:2,79:31:81:0.975:2	./.
chr1	86909685	rs72720136	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,30:33:65:0.462:2	0/1:18,19:32:37:0.514:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	86913265	rs2275001	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,52:31:84:0.619:2	0/1:31,36:30:67:0.537:2	0/1:55,55:31:110:0.500:2	0/1:3,91:31:94:0.968:2	./.	./.	./.	./.
chr1	86920904	rs2390057	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,4:33:11:0.364:2	0/1:0,76:33:76:1.00:2	0/1:2,53:32:55:0.964:2	0/1:61,43:32:104:0.413:2	0/1:2,76:32:78:0.974:2	./.	./.	0/1:32,29:33:61:0.475:2	./.
chr1	86939130	rs2145412	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,25:32:54:0.463:2	0/1:25,24:32:49:0.490:2	0/1:9,3:31:12:0.250:2	0/1:2,84:31:86:0.977:2	0/1:0,76:31:76:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,64:32:64:1.00:2	0/1:1,71:31:72:0.986:2	0/1:0,62:32:62:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,101:32:101:1.00:2
chr1	86947975	rs1321694	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,138:30:140:0.986:2	0/1:4,80:30:84:0.952:2	0/1:93,58:29:151:0.384:2	0/1:68,72:29:140:0.514:2	./.	0/1:79,80:31:159:0.503:2	0/1:78,57:30:135:0.422:2	./.
chr1	86952324	rs2734705	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:32:86:1.00:2	0/1:1,41:32:42:0.976:2	0/1:0,12:33:12:1.00:2	0/1:0,116:32:116:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,115:32:115:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,124:32:124:1.00:2	0/1:1,113:33:115:0.991:2	0/1:0,86:32:86:1.00:2	0/1:0,91:32:91:1.00:2
chr1	86959173	rs2791494	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:29:82:1.00:2	0/1:0,40:30:40:1.00:2	0/1:3,5:30:8:0.625:2	0/1:0,118:30:118:1.00:2	0/1:0,119:29:119:1.00:2	0/1:0,112:29:112:1.00:2	0/1:0,132:30:132:1.00:2	0/1:98,78:29:176:0.443:2	0/1:0,112:30:112:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,104:29:104:1.00:2
chr1	86961210	rs5744408	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,52:31:118:0.441:2	./.	./.	./.
chr1	86965419	rs1882753	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,16:30:30:0.533:2	0/1:21,19:31:40:0.475:2
chr1	87031488	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:31:12:0.417:2	./.	./.	./.	./.	./.	./.	./.
chr1	87045902	rs1932809	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,38:32:39:0.974:2	./.	./.	./.	./.	./.	./.
chr1	87101375	rs2292830	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:79,67:34:146:0.459:2	0/1:68,46:33:114:0.404:2	0/1:0,21:33:21:1.00:2	./.	./.	0/1:125,54:33:179:0.302:2	./.	0/1:119,49:33:168:0.292:2	./.	0/1:100,62:34:162:0.383:2	./.
chr1	87101649	rs2292829	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,26:32:45:0.578:2	./.	./.	./.
chr1	87170644	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:29:43:0.093:2	./.	./.	./.	./.	./.
chr1	87458742	rs61771748	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:33:14:0.286:2	./.	./.	./.	./.	./.	0/1:47,49:34:96:0.510:2	./.	./.
chr1	89225976	rs430600	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:77,43:33:120:0.358:2	0/1:47,23:33:70:0.329:2	./.	0/1:0,93:33:93:1.00:2	0/1:2,57:31:59:0.966:2	0/1:69,41:32:110:0.373:2	0/1:2,71:33:73:0.973:2	0/1:0,107:32:107:1.00:2	0/1:70,47:33:117:0.402:2	0/1:0,78:33:78:1.00:2	./.
chr1	89237556	rs9651072	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,26:32:72:0.361:2	./.	./.	./.	./.	./.	./.	./.
chr1	89271574	rs786906	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:41,26:30:67:0.388:2	0/1:20,23:29:43:0.535:2	./.	./.	0/1:2,44:30:46:0.957:2	0/1:48,18:30:66:0.273:2	0/1:35,21:30:56:0.375:2	0/1:0,61:29:61:1.00:2	0/1:61,32:30:93:0.344:2	0/1:0,75:30:75:1.00:2	./.
chr1	89273266	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:35:69:0.058:2	./.	./.
chr1	89298839	rs188265897	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:35:36:0.111:2	./.	./.
chr1	89322982	rs2794318	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,100:32:100:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,110:31:110:1.00:2	0/1:0,87:30:87:1.00:2	0/1:0,119:31:119:1.00:2	0/1:0,128:32:128:1.00:2	0/1:0,135:31:135:1.00:2	0/1:0,123:32:123:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,122:31:122:1.00:2
chr1	89426902	rs3738055	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:32:77:1.00:2	0/1:1,46:32:47:0.979:2	0/1:0,3:31:3:1.00:2	0/1:50,43:30:93:0.462:2	0/1:35,23:31:58:0.397:2	0/1:43,40:30:83:0.482:2	0/1:34,33:32:67:0.493:2	0/1:44,57:31:101:0.564:2	0/1:34,42:32:76:0.553:2	./.	0/1:41,40:32:81:0.494:2
chr1	89448520	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,5:31:185:0.027:2	./.
chr1	89448571	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,5:32:171:0.029:2	./.	./.	./.
chr1	89448608	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,5:34:158:0.032:2	./.	./.	./.	./.	./.
chr1	89448619	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:169,5:31:174:0.029:2	./.	./.	./.	0/1:142,5:31:147:0.034:2	./.	./.	./.
chr1	89448623	rs141468346	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:162,5:33:167:0.030:2	0/1:82,7:32:89:0.079:2	./.	0/1:167,14:34:181:0.077:2	./.	0/1:152,7:33:159:0.044:2	./.	0/1:135,11:31:146:0.075:2	0/1:150,5:34:157:0.032:2	./.	0/1:159,6:29:165:0.036:2
chr1	89448646	rs138129402	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:148,7:30:155:0.045:2	0/1:90,6:30:96:0.063:2	./.	0/1:162,10:31:172:0.058:2	./.	./.	./.	0/1:130,13:31:143:0.091:2	0/1:145,7:31:152:0.046:2	./.	./.
chr1	89448702	rs138519603	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,7:28:153:0.046:2	./.	./.	./.	./.	0/1:177,8:32:186:0.043:2
chr1	89448717	rs202218737	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:177,4:33:181:0.022:2	./.	./.	0/1:178,6:30:184:0.033:2	./.	./.	./.	0/1:174,9:28:183:0.049:2	0/1:181,5:31:186:0.027:2	./.	0/1:184,6:32:190:0.032:2
chr1	89448733	rs139696847	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:31:130:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	89448812	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,6:30:190:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr1	89448817	.	T	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:157,7:33:164:0.043:2	./.	0/1:184,10:28:194:0.052:2	./.	0/1:184,9:30:193:0.047:2	./.	0/1:180,7:31:187:0.037:2	./.	./.	0/1:181,7:29:188:0.037:2
chr1	89448841	rs150045246	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:171,8:28:179:0.045:2	./.	0/1:170,7:32:177:0.040:2	./.	0/1:175,10:33:185:0.054:2	0/1:175,5:32:180:0.028:2	./.	./.
chr1	89448896	rs200284841	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,6:31:175:0.034:2	0/1:154,6:32:160:0.038:2	./.	./.
chr1	89448913	rs200180389	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:161,4:32:165:0.024:2	./.	./.	./.	0/1:177,7:30:184:0.038:2	./.	0/1:181,5:33:186:0.027:2	./.	0/1:154,9:33:163:0.055:2	./.	./.
chr1	89448963	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:189,5:31:194:0.026:2	./.	./.	./.	0/1:182,4:34:186:0.022:2	./.	./.
chr1	89449029	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,5:32:181:0.028:2
chr1	89449037	rs200081893	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,10:32:185:0.054:2	./.	./.	0/1:175,6:31:181:0.033:2
chr1	89449117	rs76228469	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:140,5:30:145:0.034:2	./.	./.	./.	0/1:95,9:27:104:0.087:2	./.	./.	0/1:150,6:30:156:0.038:2
chr1	89449168	rs59048247	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,27:30:65:0.415:2	./.	./.	./.	./.
chr1	89449237	rs200727134	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:32:185:0.022:2	0/1:182,4:33:187:0.022:2	./.	./.
chr1	89449278	rs201168911	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:170,6:29:176:0.034:2	0/1:92,10:30:102:0.098:2	./.	0/1:162,22:28:184:0.120:2	./.	0/1:156,14:30:170:0.082:2	./.	0/1:162,19:29:182:0.105:2	0/1:162,17:30:179:0.095:2	./.	0/1:161,24:29:185:0.130:2
chr1	89449298	rs111779380	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:161,11:31:172:0.064:2	0/1:82,16:33:99:0.163:2	./.	0/1:152,31:32:183:0.169:2	./.	0/1:132,22:32:154:0.143:2	./.	0/1:149,29:32:178:0.163:2	0/1:142,25:33:167:0.150:2	./.	0/1:158,37:33:195:0.190:2
chr1	89449383	rs147771633	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,3:31:23:0.130:2	0/1:147,11:32:158:0.070:2	./.	0/1:140,21:31:161:0.130:2	./.	./.	./.	./.	0/1:137,13:33:152:0.087:2
chr1	89449390	rs112636230	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:147,33:33:180:0.183:2	0/1:113,32:33:145:0.221:2	0/1:21,5:30:26:0.192:2	0/1:106,51:33:157:0.325:2	./.	0/1:141,20:31:161:0.124:2	./.	0/1:102,78:32:180:0.433:2	0/1:101,54:33:155:0.348:2	./.	0/1:112,41:34:153:0.268:2
chr1	89449399	rs77567101	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:145,29:32:174:0.167:2	0/1:117,29:32:148:0.199:2	0/1:23,5:30:28:0.179:2	0/1:106,42:31:149:0.284:2	./.	0/1:140,19:28:160:0.119:2	./.	0/1:107,72:31:180:0.402:2	0/1:101,51:33:153:0.336:2	./.	0/1:103,35:32:139:0.254:2
chr1	89449434	rs2893084	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:145,28:33:173:0.162:2	0/1:147,35:33:184:0.192:2	0/1:20,5:33:25:0.200:2	0/1:109,53:34:162:0.327:2	./.	0/1:138,24:32:162:0.148:2	./.	0/1:114,71:32:185:0.384:2	0/1:103,49:34:152:0.322:2	./.	0/1:116,48:32:164:0.293:2
chr1	89449483	rs74100106	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:149,14:31:163:0.086:2	0/1:139,23:30:162:0.142:2	./.	0/1:142,40:30:182:0.220:2	./.	0/1:135,20:30:155:0.129:2	./.	0/1:145,40:30:185:0.216:2	0/1:126,48:30:175:0.276:2	./.	0/1:126,44:30:170:0.259:2
chr1	89474818	rs17433780	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:70,77:31:147:0.524:2	0/1:39,52:30:91:0.571:2	0/1:4,6:31:10:0.600:2	./.	0/1:42,56:30:98:0.571:2	0/1:47,63:31:110:0.573:2	./.	./.	0/1:46,67:31:113:0.593:2	0/1:44,68:31:112:0.607:2	0/1:76,45:30:121:0.372:2
chr1	89475135	rs10493821	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:77,95:32:172:0.552:2	0/1:47,55:31:102:0.539:2	0/1:18,16:30:34:0.471:2	./.	0/1:57,70:30:127:0.551:2	0/1:87,90:30:177:0.508:2	./.	./.	0/1:92,73:32:165:0.442:2	0/1:87,79:32:166:0.476:2	0/1:93,82:31:176:0.469:2
chr1	89478868	rs113490655	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:32:16:0.375:2	./.	./.	0/1:48,53:32:101:0.525:2	0/1:42,35:31:77:0.455:2	./.	0/1:70,51:33:121:0.421:2	./.	./.
chr1	89479063	rs4656077	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,7:32:28:0.250:2	./.	0/1:13,16:33:29:0.552:2	0/1:14,16:33:30:0.533:2	0/1:18,5:33:23:0.217:2	0/1:13,23:33:36:0.639:2	0/1:25,9:33:34:0.265:2	./.
chr1	89479074	rs4656078	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,6:32:24:0.250:2	./.	0/1:12,9:29:21:0.429:2	0/1:13,12:32:25:0.480:2	0/1:14,4:31:18:0.222:2	0/1:13,17:33:30:0.567:2	0/1:20,9:32:29:0.310:2	./.
chr1	89479758	rs3795543	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,65:32:138:0.471:2	0/1:30,41:32:71:0.577:2	0/1:0,13:33:13:1.00:2	0/1:83,68:33:151:0.450:2	0/1:58,49:31:107:0.458:2	0/1:1,130:32:131:0.992:2	0/1:65,45:32:110:0.409:2	0/1:92,68:32:160:0.425:2	0/1:0,155:33:155:1.00:2	0/1:1,110:32:111:0.991:2	0/1:81,83:33:164:0.506:2
chr1	89479866	rs144891343	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:34:166:0.024:2	./.	./.
chr1	89479940	rs371490793	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,5:31:160:0.031:2
chr1	89481032	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:32:155:0.026:2	./.	./.	./.
chr1	89481060	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,5:31:145:0.034:2	./.	./.	./.
chr1	89481072	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,5:32:131:0.038:2	./.	./.	./.
chr1	89481087	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,5:32:103:0.049:2	./.	./.	./.
chr1	89521829	.	A	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:181,7:32:190:0.037:2	./.	0/1:161,7:30:168:0.042:2	./.	0/1:182,11:29:193:0.057:2	./.	./.	./.
chr1	89521841	rs1048443	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:32:12:0.583:2	./.	./.	0/1:100,66:32:166:0.398:2	./.	./.	0/1:93,101:33:194:0.521:2	0/1:101,51:31:152:0.336:2	0/1:104,73:32:180:0.412:2
chr1	89521851	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:163,4:32:168:0.024:2	./.	./.	0/1:182,7:31:189:0.037:2	./.	0/1:167,7:31:175:0.040:2	./.	0/1:183,10:31:193:0.052:2	./.	./.	./.
chr1	89522646	rs1048425	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,62:33:135:0.459:2	0/1:40,37:32:77:0.481:2	0/1:0,21:32:21:1.00:2	0/1:85,61:32:146:0.418:2	0/1:63,75:32:138:0.543:2	0/1:3,142:31:145:0.979:2	0/1:121,77:32:198:0.389:2	0/1:92,73:32:165:0.442:2	0/1:2,159:33:161:0.988:2	0/1:3,132:32:135:0.978:2	0/1:69,83:32:155:0.546:2
chr1	89523756	rs148526074	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,43:32:108:0.398:2	./.	./.	./.	./.	./.	./.	./.
chr1	89525903	rs143075008	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,10:32:114:0.088:2	./.	./.	./.	./.
chr1	89525943	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,5:31:112:0.045:2	./.	./.	./.	./.
chr1	89579924	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,6:28:149:0.040:2	./.	./.	./.	./.
chr1	89579927	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,6:33:137:0.044:2	./.	./.	./.	./.
chr1	89579941	rs2230338	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,117:29:120:0.975:2	0/1:2,70:28:72:0.972:2	0/1:13,9:28:22:0.409:2	0/1:5,146:28:151:0.967:2	0/1:73,60:28:133:0.451:2	0/1:90,68:29:158:0.430:2	0/1:11,107:28:118:0.907:2	0/1:3,127:28:130:0.977:2	0/1:103,54:30:157:0.344:2	0/1:63,67:29:131:0.515:2	0/1:73,65:28:138:0.471:2
chr1	89582690	rs1803632	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,101:32:101:1.00:2	0/1:1,58:32:59:0.983:2	0/1:7,6:32:13:0.462:2	0/1:0,93:33:93:1.00:2	0/1:35,42:32:77:0.545:2	0/1:55,57:32:112:0.509:2	0/1:0,100:32:100:1.00:2	0/1:1,118:32:120:0.992:2	0/1:58,58:33:116:0.500:2	0/1:47,61:32:108:0.565:2	0/1:70,54:32:124:0.435:2
chr1	89585906	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:32:191:0.021:2	./.	./.	./.	./.
chr1	89599037	rs72728707	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:166,19:30:185:0.103:2	0/1:177,14:33:191:0.073:2	0/1:39,7:32:46:0.152:2	./.	0/1:172,18:32:190:0.095:2	0/1:168,20:32:189:0.106:2	0/1:173,15:32:188:0.080:2	0/1:162,24:31:186:0.129:2	0/1:169,18:33:187:0.096:2	0/1:165,17:33:182:0.093:2	./.
chr1	89599070	rs151091316	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:177,12:33:189:0.063:2	0/1:179,9:32:188:0.048:2	0/1:39,3:34:42:0.071:2	./.	0/1:175,13:32:188:0.069:2	0/1:178,10:32:188:0.053:2	0/1:182,10:32:192:0.052:2	0/1:177,14:33:191:0.073:2	0/1:176,10:33:186:0.054:2	0/1:178,9:33:188:0.048:2	./.
chr1	89599084	rs79037912	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:159,6:32:166:0.036:2	./.	./.	./.	0/1:162,7:31:169:0.041:2	0/1:189,5:33:194:0.026:2	./.	./.	./.	./.	./.
chr1	89607289	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:67,4:33:71:0.056:2	./.	./.	./.	./.	./.	0/1:110,4:34:114:0.035:2	./.	./.	./.	./.
chr1	89637578	rs676913	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:32:69:1.00:2	0/1:0,55:31:55:1.00:2	0/1:9,7:31:16:0.438:2	0/1:2,79:31:82:0.975:2	0/1:32,36:31:68:0.529:2	0/1:42,46:30:88:0.523:2	0/1:0,81:31:81:1.00:2	0/1:1,64:31:65:0.985:2	0/1:49,37:32:86:0.430:2	0/1:30,41:32:71:0.577:2	0/1:56,40:32:96:0.417:2
chr1	89652071	rs561042	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:123,15:32:139:0.109:2	0/1:101,9:30:110:0.082:2	./.	./.	0/1:135,16:31:151:0.106:2	0/1:122,27:32:149:0.181:2	0/1:133,13:33:146:0.089:2	0/1:129,18:33:147:0.122:2	0/1:138,10:33:148:0.068:2	0/1:122,15:32:137:0.109:2	./.
chr1	89652072	rs561037	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:122,15:31:137:0.109:2	0/1:102,9:32:111:0.081:2	./.	./.	0/1:136,16:30:152:0.105:2	0/1:121,27:31:149:0.182:2	0/1:131,13:33:144:0.090:2	0/1:128,18:31:146:0.123:2	0/1:140,10:33:150:0.067:2	0/1:122,15:32:137:0.109:2	./.
chr1	89652078	rs608339	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:121,12:31:133:0.090:2	0/1:101,9:29:110:0.082:2	./.	./.	0/1:130,14:30:144:0.097:2	0/1:117,20:30:137:0.146:2	0/1:137,8:31:146:0.055:2	0/1:131,9:32:141:0.064:2	0/1:143,6:32:150:0.040:2	0/1:125,13:32:138:0.094:2	./.
chr1	89652102	rs655260	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:126,11:31:137:0.080:2	./.	./.	./.	0/1:120,6:30:126:0.048:2	0/1:122,12:32:134:0.090:2	0/1:124,7:30:131:0.053:2	0/1:135,15:31:151:0.100:2	0/1:134,8:32:142:0.056:2	0/1:127,7:32:134:0.052:2	./.
chr1	89652204	rs188809753	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,49:29:88:0.557:2	./.	./.	./.	./.	./.	./.	./.
chr1	89656974	rs61738489	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,40:32:109:0.367:2	0/1:95,89:32:184:0.484:2
chr1	89732237	rs61729628	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,22:32:38:0.579:2	0/1:34,33:32:67:0.493:2	0/1:18,21:33:39:0.538:2	./.	0/1:40,35:33:75:0.467:2	./.	./.
chr1	89843717	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,6:33:80:0.075:2	./.	./.	./.
chr1	89843737	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,6:31:66:0.091:2	./.	./.	./.
chr1	89844035	rs35837853	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,23:33:37:0.622:2	./.	./.	./.	./.
chr1	89846152	rs4582772	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,12:31:36:0.343:2	0/1:7,11:32:18:0.611:2	./.	./.	0/1:25,15:32:40:0.375:2	0/1:18,14:30:32:0.438:2	./.	./.	0/1:24,27:33:51:0.529:2	./.	0/1:34,32:32:66:0.485:2
chr1	89847267	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:32:150:0.027:2	./.	./.
chr1	89847372	rs4658359	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:31:53:1.00:2	0/1:0,50:32:50:1.00:2	0/1:1,2:31:3:0.667:2	0/1:34,42:31:76:0.553:2	0/1:0,66:31:67:1.00:2	0/1:0,95:31:95:1.00:2	0/1:43,28:32:71:0.394:2	0/1:49,44:31:93:0.473:2	0/1:1,87:31:88:0.989:2	0/1:0,74:32:74:1.00:2	0/1:1,83:31:84:0.988:2
chr1	89847411	rs4658360	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:30:63:1.00:2	0/1:0,49:31:49:1.00:2	0/1:2,4:31:6:0.667:2	0/1:34,43:31:77:0.558:2	0/1:1,80:29:82:0.988:2	0/1:0,96:30:97:1.00:2	0/1:35,22:31:57:0.386:2	0/1:51,37:31:89:0.420:2	0/1:0,78:31:79:1.00:2	0/1:0,81:30:81:1.00:2	0/1:0,80:30:80:1.00:2
chr1	89847444	rs4658146	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:29:63:1.00:2	0/1:0,41:29:41:1.00:2	0/1:2,5:29:7:0.714:2	0/1:45,33:30:78:0.423:2	0/1:0,77:29:77:1.00:2	0/1:0,104:29:104:1.00:2	0/1:28,23:30:51:0.451:2	0/1:52,36:29:88:0.409:2	0/1:0,72:30:73:1.00:2	0/1:0,81:29:82:1.00:2	0/1:2,89:29:91:0.978:2
chr1	89849268	rs41288387	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,79:32:175:0.457:2	./.	./.	./.	./.
chr1	89849742	rs959460	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,103:31:104:0.990:2	0/1:1,60:32:61:0.984:2	0/1:0,13:30:13:1.00:2	0/1:0,115:31:115:1.00:2	0/1:0,143:30:144:1.00:2	0/1:0,114:30:114:1.00:2	0/1:80,76:31:156:0.487:2	0/1:0,142:31:142:1.00:2	0/1:0,118:32:118:1.00:2	0/1:0,126:31:126:1.00:2	0/1:0,130:31:130:1.00:2
chr1	90048248	rs12130207	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,107:32:192:0.557:2	./.	./.	./.
chr1	90048976	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,4:32:90:0.044:2	./.	./.	./.	./.	./.	./.	./.
chr1	90049040	rs36084789	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,6:30:11:0.545:2	0/1:63,35:30:98:0.357:2	0/1:43,20:30:63:0.317:2	./.	./.	./.	./.	./.	./.
chr1	90178743	rs474536	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:32:77:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,68:33:68:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,68:31:69:1.00:2	0/1:1,107:32:108:0.991:2
chr1	90179532	rs12032393	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,12:32:18:0.667:2	0/1:5,11:31:16:0.688:2	./.	0/1:10,10:32:20:0.500:2	./.	./.	./.	./.
chr1	90473298	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:33:62:0.065:2	./.	./.
chr1	90484253	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:32:102:0.039:2	./.
chr1	90486412	rs2816881	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,168:33:170:0.988:2	0/1:0,91:32:91:1.00:2	0/1:13,7:32:20:0.350:2	0/1:64,94:33:158:0.595:2	0/1:0,176:32:176:1.00:2	0/1:0,131:31:131:1.00:2	0/1:74,89:32:163:0.546:2	0/1:89,72:33:161:0.447:2	0/1:98,70:34:168:0.417:2	0/1:96,83:33:179:0.464:2	0/1:75,65:32:141:0.464:2
chr1	90493026	rs10922744	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,81:32:84:0.964:2	0/1:0,59:33:59:1.00:2	0/1:6,4:32:10:0.400:2	0/1:59,43:32:102:0.422:2	0/1:0,77:32:77:1.00:2	0/1:0,78:31:78:1.00:2	0/1:52,36:32:88:0.409:2	0/1:43,52:32:95:0.547:2	0/1:64,57:33:121:0.471:2	0/1:46,36:32:82:0.439:2	0/1:38,53:32:91:0.582:2
chr1	91178081	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:30:81:0.049:2	./.	./.	./.
chr1	91182180	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:33:102:0.039:2
chr1	91728053	rs585898	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:33:103:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,117:32:117:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,96:33:96:1.00:2	0/1:0,145:32:145:1.00:2	0/1:0,155:34:155:1.00:2	0/1:0,97:33:97:1.00:2	0/1:0,147:33:147:1.00:2
chr1	91781413	rs281992	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,13:30:21:0.619:2	0/1:2,140:30:142:0.986:2	0/1:59,81:29:140:0.579:2	0/1:2,194:29:196:0.990:2	0/1:0,107:30:107:1.00:2	0/1:86,107:30:193:0.554:2	0/1:1,185:31:186:0.995:2	0/1:0,133:30:133:1.00:2	0/1:93,93:30:186:0.500:2
chr1	91782031	rs11584478	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,64:31:65:0.985:2	0/1:0,23:32:23:1.00:2	0/1:4,3:33:7:0.429:2	./.	0/1:27,27:32:54:0.500:2	./.	./.	0/1:24,43:32:67:0.642:2	./.	./.	0/1:49,49:32:98:0.500:2
chr1	91784887	rs10493845	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,115:33:115:1.00:2	0/1:0,53:33:53:1.00:2	0/1:13,5:33:18:0.278:2	./.	0/1:67,48:33:115:0.417:2	./.	./.	0/1:60,58:33:118:0.492:2	./.	./.	0/1:88,74:33:162:0.457:2
chr1	91851193	rs12144808	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,12:32:21:0.571:2	./.	./.	./.	./.	./.	./.	0/1:64,49:32:113:0.434:2	./.
chr1	91851253	rs282026	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:33:95:1.00:2	0/1:0,60:33:60:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,114:33:114:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,124:33:124:1.00:2	0/1:0,127:34:127:1.00:2	0/1:0,102:33:102:1.00:2	0/1:0,131:33:131:1.00:2
chr1	91859795	rs282009	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,185:33:185:1.00:2	0/1:0,110:33:110:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,181:33:181:1.00:2	0/1:0,148:32:148:1.00:2	0/1:0,183:32:183:1.00:2	0/1:1,168:32:169:0.994:2	0/1:0,170:32:170:1.00:2	0/1:0,183:34:183:1.00:2	0/1:0,160:33:160:1.00:2	0/1:0,182:33:182:1.00:2
chr1	91859801	rs11165778	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,175:32:178:0.989:2	0/1:3,102:32:105:0.971:2	0/1:16,10:31:26:0.385:2	./.	0/1:80,58:32:139:0.420:2	./.	./.	0/1:92,80:32:172:0.465:2	./.	./.	0/1:105,78:32:183:0.426:2
chr1	91973441	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:33:89:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	91980447	rs483532	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,137:30:137:1.00:2	0/1:3,87:29:90:0.967:2	./.	0/1:86,82:30:168:0.488:2	0/1:53,38:29:91:0.418:2	0/1:63,92:30:155:0.594:2	0/1:0,120:29:120:1.00:2	0/1:0,173:30:173:1.00:2	0/1:0,181:31:182:1.00:2	0/1:0,152:30:152:1.00:2	0/1:0,172:30:172:1.00:2
chr1	92174260	rs284878	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:31:92:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,12:31:12:1.00:2	0/1:1,167:33:168:0.994:2	0/1:0,165:32:165:1.00:2	0/1:0,151:33:151:1.00:2	0/1:0,191:33:191:1.00:2	0/1:1,187:32:189:0.995:2	0/1:0,173:33:174:1.00:2	0/1:0,129:32:129:1.00:2	0/1:0,139:33:139:1.00:2
chr1	92177938	rs1805113	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,56:32:126:0.444:2	0/1:57,36:32:93:0.387:2	0/1:7,6:32:13:0.462:2	0/1:2,134:32:136:0.985:2	0/1:66,64:31:130:0.492:2	0/1:0,125:32:125:1.00:2	0/1:60,64:32:125:0.516:2	0/1:1,134:32:135:0.993:2	./.	0/1:64,38:32:102:0.373:2	0/1:2,137:33:139:0.986:2
chr1	92185657	rs1805112	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,19:31:42:0.463:2	0/1:10,13:32:23:0.565:2	./.	./.	0/1:0,20:31:20:1.00:2	0/1:3,23:30:26:0.885:2	0/1:16,8:29:24:0.333:2	0/1:1,28:30:29:0.966:2	0/1:14,14:32:28:0.500:2	0/1:15,8:32:23:0.348:2	0/1:0,32:31:33:1.00:2
chr1	92185735	rs11466595	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,15:31:30:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr1	92195379	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,5:31:197:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr1	92262874	rs2810904	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:0,93:30:93:1.00:2	0/1:2,8:29:10:0.800:2	0/1:65,54:32:120:0.454:2	0/1:85,56:30:141:0.397:2	0/1:96,54:31:150:0.360:2	0/1:3,166:31:169:0.982:2	0/1:99,76:31:175:0.434:2	0/1:78,83:32:161:0.516:2	0/1:0,99:31:99:1.00:2	0/1:3,130:31:133:0.977:2
chr1	92327045	rs1805110	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,60:32:137:0.438:2	0/1:36,27:32:63:0.429:2	./.	./.	./.	./.	./.	./.	0/1:107,91:32:198:0.460:2	./.	0/1:96,83:32:179:0.464:2
chr1	92428495	rs10783071	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:32:30:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,61:31:61:1.00:2	0/1:28,27:32:55:0.491:2	0/1:47,35:31:82:0.427:2	0/1:0,79:32:79:1.00:2	0/1:14,23:31:37:0.622:2	0/1:0,96:32:96:1.00:2
chr1	92442695	rs1156281	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,12:32:44:0.273:2	0/1:40,28:32:68:0.412:2	./.	0/1:27,21:33:48:0.438:2	./.
chr1	92445257	rs3088232	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,21:32:57:0.368:2	./.	0/1:65,60:33:125:0.480:2	./.	0/1:57,56:32:113:0.496:2
chr1	92457843	rs10747493	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:33:62:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,99:32:99:1.00:2	0/1:34,19:31:53:0.358:2	0/1:45,21:30:66:0.318:2	0/1:30,15:32:45:0.333:2	./.	0/1:0,78:34:78:1.00:2	0/1:29,41:33:70:0.586:2	0/1:0,106:33:106:1.00:2
chr1	92479778	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,7:31:188:0.037:2	./.	./.	./.
chr1	92511171	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:30:112:0.036:2	./.	./.	./.	./.
chr1	92568084	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:31:82:0.049:2	./.	./.
chr1	92568089	rs17131602	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,65:33:134:0.485:2
chr1	92632555	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:34:195:0.021:2	./.	./.
chr1	92632683	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:31:178:0.022:2	./.	./.	./.	./.	./.
chr1	92646021	rs1483022	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:32,18:32:50:0.360:2	0/1:30,14:32:44:0.318:2	0/1:0,7:31:7:1.00:2	./.	0/1:0,39:31:39:1.00:2	0/1:0,36:30:36:1.00:2	0/1:14,21:32:35:0.600:2	0/1:1,36:31:37:0.973:2	0/1:39,30:33:69:0.435:2	0/1:0,60:31:60:1.00:2	0/1:45,33:31:78:0.423:2
chr1	92647145	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:33:40:0.100:2	./.	./.
chr1	92647223	rs560389	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,50:33:50:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,5:33:5:1.00:2	./.	0/1:1,38:31:39:0.974:2	0/1:0,33:32:33:1.00:2	0/1:16,20:32:36:0.556:2	0/1:0,44:32:44:1.00:2	0/1:0,64:33:64:1.00:2	0/1:0,22:31:22:1.00:2	0/1:34,24:33:58:0.414:2
chr1	92647532	rs565156	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,43:32:43:1.00:2	0/1:0,33:32:33:1.00:2	./.	0/1:0,38:32:38:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,50:32:50:1.00:2
chr1	92647861	rs566576	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,25:32:53:0.472:2	./.	./.
chr1	92735273	rs61758979	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,58:32:150:0.387:2	./.
chr1	92811455	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,50:33:85:0.588:2
chr1	92946037	rs114487177	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,4:31:21:0.190:2	0/1:8,6:33:14:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	92946479	rs11164605	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:31:16:1.00:2	0/1:0,8:28:8:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,10:29:10:1.00:2	./.	./.	0/1:0,2:31:2:1.00:2	0/1:1,3:31:4:0.750:2	0/1:0,7:32:7:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,3:30:3:1.00:2
chr1	92948551	rs143913803	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	92948938	rs34631763	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:8,13:27:21:0.619:2	0/1:8,6:30:14:0.429:2	./.	0/1:6,15:30:21:0.714:2	./.	./.	./.	./.	0/1:10,4:30:14:0.286:2	./.	./.
chr1	92979354	rs6603979	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:33:75:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,8:33:8:1.00:2	0/1:1,76:33:77:0.987:2	0/1:37,19:32:56:0.339:2	./.	0/1:0,34:32:34:1.00:2	0/1:38,29:32:67:0.433:2	0/1:0,39:32:39:1.00:2	0/1:0,63:33:63:1.00:2	0/1:0,81:32:81:1.00:2
chr1	92979432	rs41286809	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,17:29:55:0.309:2
chr1	93073228	rs11808092	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,71:33:115:0.617:2	0/1:33,30:32:63:0.476:2	./.	0/1:2,145:32:147:0.986:2	0/1:50,57:32:107:0.533:2	0/1:0,145:31:145:1.00:2	0/1:64,48:31:112:0.429:2	0/1:68,78:32:146:0.534:2	0/1:89,50:33:139:0.360:2	./.	./.
chr1	93089823	rs7514716	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,150:33:150:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,163:33:163:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,162:32:162:1.00:2	0/1:0,133:33:133:1.00:2	0/1:0,146:33:146:1.00:2	0/1:0,149:34:149:1.00:2	0/1:0,147:33:147:1.00:2	0/1:0,150:33:150:1.00:2
chr1	93160902	rs2391199	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,110:32:112:0.982:2	0/1:3,77:32:80:0.963:2	0/1:0,24:32:24:1.00:2	0/1:2,118:32:120:0.983:2	0/1:0,107:32:107:1.00:2	0/1:0,129:32:129:1.00:2	0/1:0,120:32:120:1.00:2	0/1:0,172:32:172:1.00:2	0/1:0,173:33:173:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,136:33:136:1.00:2
chr1	93297630	rs145634330	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,24:31:54:0.444:2	./.
chr1	93297677	rs200628272	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,42:32:93:0.452:2
chr1	93297696	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:31:61:0.066:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	93300404	rs113792800	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,8:27:16:0.500:2	./.	./.	./.
chr1	93303071	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,35:33:80:0.438:2	./.	./.
chr1	93307359	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:30:111:0.036:2	./.
chr1	93580581	rs2815427	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:33:95:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,128:33:128:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,76:33:76:1.00:2	0/1:0,115:32:115:1.00:2	0/1:0,126:33:126:1.00:2	0/1:0,125:33:125:1.00:2	0/1:0,118:32:118:1.00:2
chr1	93584885	rs75449515	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,10:16:44:0.227:2
chr1	93584930	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:33:109:0.037:2
chr1	93620393	rs1060622	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,46:32:97:0.474:2	0/1:21,18:32:39:0.462:2	./.	0/1:2,93:31:95:0.979:2	0/1:62,38:31:100:0.380:2	0/1:3,121:31:124:0.976:2	0/1:0,94:31:94:1.00:2	./.	./.	0/1:0,104:32:104:1.00:2	./.
chr1	93621571	rs142621868	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,18:33:45:0.400:2	./.	./.
chr1	93646207	rs2297707	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	0/1:0,5:33:5:1.00:2	./.
chr1	93646361	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,10:31:21:0.476:2	./.	./.	./.	./.
chr1	93646418	rs10874763	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,23:31:25:0.920:2	0/1:17,8:29:25:0.320:2	0/1:0,16:30:16:1.00:2	./.	./.	./.	0/1:8,4:29:12:0.333:2	./.
chr1	93646433	rs2255722	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,11:33:19:0.579:2	0/1:6,11:33:17:0.647:2	./.	./.
chr1	93672688	rs2783499	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:31:8:0.375:2	./.	./.	./.	./.	0/1:19,21:31:40:0.525:2	0/1:43,37:33:80:0.463:2	./.	0/1:49,36:32:86:0.424:2
chr1	93672723	rs2815413	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,53:32:99:0.535:2	0/1:33,31:31:64:0.484:2	0/1:0,19:29:19:1.00:2	0/1:1,116:32:117:0.991:2	0/1:57,25:32:82:0.305:2	0/1:4,114:32:118:0.966:2	0/1:1,75:32:76:0.987:2	0/1:63,60:32:123:0.488:2	0/1:99,65:33:164:0.396:2	0/1:2,87:32:89:0.978:2	0/1:90,71:32:161:0.441:2
chr1	93698072	rs77458693	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,9:31:27:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	93704952	rs41292127	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:32:11:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	93720070	rs12030843	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:32:13:0.538:2	./.	./.	./.	./.	0/1:28,34:32:62:0.548:2	0/1:64,51:33:115:0.443:2	./.	0/1:55,59:32:114:0.518:2
chr1	93720153	rs61729705	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,38:29:76:0.500:2	./.	./.	./.	./.	./.	./.
chr1	93735934	rs41292129	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:45,38:32:83:0.458:2	0/1:26,25:32:51:0.490:2	./.	./.	./.	./.	./.	./.	./.	0/1:33,53:32:86:0.616:2	./.
chr1	93736292	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:34:91:0.044:2
chr1	93744055	rs10874767	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:33,17:32:50:0.340:2	0/1:21,4:32:25:0.160:2	./.	./.	./.	./.	./.	0/1:23,12:31:35:0.343:2	0/1:30,15:31:45:0.333:2	./.	0/1:33,15:33:48:0.313:2
chr1	93826178	rs3088371	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,88:32:181:0.486:2
chr1	93995254	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:32:106:0.038:2	./.	./.	./.	./.
chr1	94017964	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:33:147:0.027:2	./.	./.
chr1	94048026	rs116760841	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,54:29:111:0.491:2
chr1	94048485	rs12760294	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,4:31:9:0.444:2	./.	./.	./.	./.	./.	./.
chr1	94336300	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:33:190:0.021:2
chr1	94341267	rs2273165	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,4:31:12:0.333:2	0/1:24,29:33:53:0.547:2	./.	0/1:1,56:32:57:0.982:2	0/1:0,33:33:33:1.00:2	0/1:0,48:33:48:1.00:2	./.	0/1:23,19:33:42:0.452:2	./.
chr1	94342061	rs41292661	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,74:31:149:0.497:2	./.	0/1:68,68:30:136:0.500:2	./.	./.	./.	./.	./.
chr1	94342207	rs180694931	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,94:33:190:0.495:2	./.	./.	./.	./.	./.	./.	./.
chr1	94342564	rs3747965	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:31:6:0.500:2	0/1:24,16:32:40:0.400:2	./.	0/1:0,37:30:37:1.00:2	0/1:20,23:32:43:0.535:2	0/1:21,27:33:48:0.563:2	./.	0/1:18,10:33:28:0.357:2	./.
chr1	94343023	rs2391322	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,23:32:50:0.460:2	./.	0/1:1,54:32:55:0.982:2	0/1:16,23:32:39:0.590:2	0/1:28,43:33:71:0.606:2	./.	0/1:30,22:32:53:0.423:2	./.
chr1	94343233	rs3789457	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,59:32:121:0.488:2	0/1:30,41:33:71:0.577:2	0/1:0,12:32:12:1.00:2	0/1:43,63:32:106:0.594:2	0/1:40,32:30:72:0.444:2	0/1:1,108:32:109:0.991:2	0/1:0,61:32:61:1.00:2	0/1:2,130:32:133:0.985:2	0/1:73,68:33:141:0.482:2	0/1:50,53:33:103:0.515:2	0/1:0,99:32:99:1.00:2
chr1	94344716	rs2235971	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,3:29:9:0.333:2	0/1:43,29:32:72:0.403:2	./.	0/1:1,92:31:93:0.989:2	0/1:55,50:32:105:0.476:2	0/1:55,41:30:96:0.427:2	./.	0/1:36,29:31:65:0.446:2	./.
chr1	94461717	rs6666652	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,11:32:32:0.344:2	0/1:8,8:32:16:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	94461754	rs1800717	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,11:32:29:0.379:2	0/1:8,5:31:13:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	94466659	rs1801555	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,17:30:37:0.459:2	0/1:8,9:30:17:0.529:2	./.	./.	0/1:17,24:30:41:0.585:2	0/1:19,22:28:41:0.537:2	./.	./.	./.	./.	./.
chr1	94467447	rs1801359	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:27,24:30:51:0.471:2	0/1:14,15:32:29:0.517:2	0/1:1,6:31:7:0.857:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	94471075	rs1762114	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,23:30:40:0.575:2	0/1:11,23:30:34:0.676:2	./.	0/1:0,39:30:39:1.00:2	0/1:0,44:30:44:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,53:30:53:1.00:2	0/1:2,49:31:51:0.961:2	0/1:0,61:31:62:1.00:2	0/1:2,79:30:81:0.975:2
chr1	94473845	rs2275029	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,19:30:40:0.475:2	0/1:28,8:29:36:0.222:2	./.	0/1:31,11:31:42:0.262:2	0/1:41,14:28:55:0.255:2	./.	./.	./.	./.	./.	0/1:0,37:29:37:1.00:2
chr1	94473846	rs56142141	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,11:32:42:0.262:2	./.	./.	./.	./.	./.	./.	0/1:28,10:31:38:0.263:2
chr1	94473864	rs1800739	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,17:32:35:0.486:2	0/1:24,7:32:31:0.226:2	./.	0/1:26,7:31:33:0.212:2	0/1:31,8:31:39:0.205:2	./.	./.	./.	./.	./.	0/1:0,32:32:32:1.00:2
chr1	94474328	rs4147857	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:63,43:33:106:0.406:2	0/1:55,15:33:70:0.214:2	./.	0/1:80,66:33:146:0.452:2	0/1:69,40:33:109:0.367:2	./.	./.	./.	./.	./.	0/1:1,138:33:139:0.993:2
chr1	94476388	rs1801574	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:38,30:33:68:0.441:2	0/1:20,8:32:28:0.286:2	./.	0/1:52,48:33:100:0.480:2	0/1:73,62:32:135:0.459:2	./.	./.	./.	0/1:48,29:33:77:0.377:2	./.	0/1:2,55:32:57:0.965:2
chr1	94476467	rs1801466	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,30:32:82:0.366:2	./.	./.
chr1	94485208	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:32:76:0.053:2	./.
chr1	94544233	rs4147831	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,8:33:17:0.471:2	./.	./.	./.	./.	0/1:72,60:32:132:0.455:2	./.	./.	./.
chr1	94544234	rs3112831	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:54,26:30:80:0.325:2	0/1:27,18:30:45:0.400:2	./.	0/1:53,53:29:106:0.500:2	0/1:54,36:30:90:0.400:2	./.	./.	./.	0/1:68,44:30:112:0.393:2	0/1:50,39:31:89:0.438:2	./.
chr1	94546079	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,22:31:49:0.449:2	./.	./.
chr1	94564483	rs6657239	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,24:30:54:0.444:2	./.	./.	./.	./.	./.	./.
chr1	94578548	rs4847281	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,118:30:118:1.00:2	0/1:0,56:29:56:1.00:2	0/1:0,16:29:16:1.00:2	0/1:1,135:30:136:0.993:2	0/1:0,114:30:114:1.00:2	0/1:0,158:30:158:1.00:2	0/1:0,117:30:117:1.00:2	0/1:1,180:30:181:0.994:2	0/1:0,134:31:134:1.00:2	0/1:0,113:30:113:1.00:2	0/1:0,151:30:151:1.00:2
chr1	94639447	rs1999272	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:31:66:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,86:31:86:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,82:31:82:1.00:2
chr1	94639475	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:34:108:0.037:2	./.
chr1	94643531	rs1048854	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,27:33:63:0.429:2	./.	0/1:28,33:33:61:0.541:2	0/1:24,37:33:61:0.607:2	./.	0/1:27,33:34:60:0.550:2	./.	./.
chr1	94930345	rs16946	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,41:33:84:0.488:2	0/1:23,9:32:32:0.281:2	./.	0/1:2,47:31:49:0.959:2	0/1:38,21:32:59:0.356:2	./.	0/1:45,24:33:69:0.348:2	0/1:22,31:32:53:0.585:2	0/1:33,26:33:59:0.441:2	0/1:0,59:32:59:1.00:2	0/1:65,40:32:105:0.381:2
chr1	94982641	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,5:31:84:0.060:2	./.	./.
chr1	94996062	rs3789683	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,32:30:71:0.451:2	./.	./.	./.	./.
chr1	94996139	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,4:31:43:0.093:2	./.	./.	./.	./.	./.	./.
chr1	95001600	rs698946	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:31:67:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,9:30:9:1.00:2	0/1:1,70:30:71:0.986:2	0/1:0,75:29:75:1.00:2	0/1:0,86:30:86:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,108:30:108:1.00:2	0/1:0,97:31:97:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,70:30:70:1.00:2
chr1	95294089	rs2640065	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:37,42:32:79:0.532:2	0/1:34,21:32:55:0.382:2	./.	./.	0/1:26,26:30:52:0.500:2	0/1:63,53:32:116:0.457:2	0/1:28,34:31:62:0.548:2	0/1:53,43:32:96:0.448:2	0/1:43,50:33:93:0.538:2	0/1:48,45:32:93:0.484:2	./.
chr1	95307680	rs144117916	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,18:32:52:0.346:2	./.	./.	./.	./.
chr1	95330372	rs859098	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,49:33:92:0.533:2	0/1:37,24:32:61:0.393:2	0/1:0,10:32:10:1.00:2	0/1:72,44:32:117:0.379:2	0/1:0,74:32:74:1.00:2	0/1:1,123:31:124:0.992:2	0/1:63,38:32:101:0.376:2	0/1:6,118:32:124:0.952:2	0/1:0,116:33:116:1.00:2	0/1:1,114:32:115:0.991:2	0/1:86,77:33:164:0.472:2
chr1	95367773	rs2228344	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,23:32:44:0.523:2	0/1:16,14:30:30:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	95709821	rs259358	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,122:30:122:1.00:2	0/1:0,63:31:63:1.00:2	0/1:1,18:32:19:0.947:2	0/1:0,148:31:148:1.00:2	0/1:0,98:30:98:1.00:2	0/1:0,142:31:144:1.00:2	0/1:2,115:31:117:0.983:2	0/1:2,143:30:145:0.986:2	0/1:0,186:31:186:1.00:2	0/1:0,110:31:110:1.00:2	0/1:3,141:31:145:0.979:2
chr1	95709939	rs2296308	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,80:32:168:0.476:2	0/1:56,49:32:105:0.467:2	0/1:1,25:32:26:0.962:2	0/1:2,134:32:136:0.985:2	0/1:68,63:32:131:0.481:2	0/1:2,143:32:145:0.986:2	0/1:61,59:32:120:0.492:2	0/1:2,143:32:145:0.986:2	0/1:0,160:33:161:1.00:2	0/1:0,152:32:152:1.00:2	./.
chr1	97189091	rs3762411	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:33:57:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,5:32:5:1.00:2	0/1:35,32:33:67:0.478:2	0/1:0,38:32:38:1.00:2	0/1:1,59:32:60:0.983:2	0/1:29,16:32:45:0.356:2	./.	0/1:0,71:33:71:1.00:2	0/1:42,19:32:61:0.311:2	0/1:51,45:32:96:0.469:2
chr1	97272456	rs6699932	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,34:33:70:0.486:2	0/1:22,19:32:41:0.463:2	./.	0/1:28,19:32:47:0.404:2	./.	0/1:0,71:33:71:1.00:2	./.	./.
chr1	97770920	rs1801160	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,29:32:79:0.367:2	0/1:19,14:32:33:0.424:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	97981395	rs1801159	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:33,32:32:65:0.492:2	0/1:21,22:32:43:0.512:2	./.	./.	./.	./.	0/1:27,40:31:67:0.597:2	./.	./.	./.	./.
chr1	97981421	rs1801158	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,82:31:82:1.00:2	./.	./.	./.	0/1:51,36:31:87:0.414:2	./.	0/1:29,29:32:58:0.500:2	./.
chr1	98165091	rs2297595	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:31:9:0.556:2	./.	./.	./.	./.	./.	0/1:41,24:33:65:0.369:2	0/1:21,18:33:39:0.462:2	0/1:45,35:33:80:0.438:2
chr1	98348885	rs1801265	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:76,81:32:158:0.516:2	0/1:61,56:31:117:0.479:2	0/1:13,5:31:18:0.278:2	0/1:2,127:32:129:0.984:2	0/1:0,84:31:84:1.00:2	0/1:0,112:31:112:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,125:32:125:1.00:2	0/1:65,79:33:144:0.549:2	0/1:1,120:32:121:0.992:2	0/1:80,52:32:133:0.394:2
chr1	98511633	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:30:111:0.036:2	./.	./.	./.	./.	./.
chr1	99127392	rs9728148	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,25:32:26:0.962:2	0/1:0,10:31:10:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,40:31:40:1.00:2	0/1:1,28:31:29:0.966:2	0/1:0,42:31:42:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,15:31:15:1.00:2
chr1	99164434	rs6577322	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,59:31:140:0.421:2	./.	./.	./.	0/1:1,150:31:151:0.993:2	./.	./.	./.
chr1	99167369	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:30:43:0.093:2	./.	./.	./.	./.	./.
chr1	99167428	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,8:32:69:0.116:2	./.	./.	0/1:88,5:34:93:0.054:2	./.	./.
chr1	99167452	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:31:50:0.080:2	./.	./.	0/1:79,5:29:84:0.060:2	./.	./.
chr1	99225627	rs2019213	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:32:77:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,115:31:115:1.00:2	0/1:1,83:31:84:0.988:2	0/1:0,119:31:119:1.00:2	0/1:2,124:32:126:0.984:2	0/1:0,161:31:161:1.00:2	0/1:0,139:32:139:1.00:2	0/1:0,77:32:78:1.00:2	0/1:0,120:31:120:1.00:2
chr1	99418647	rs309087	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,20:31:47:0.426:2	0/1:2,80:31:82:0.976:2	./.	./.	./.	./.	./.
chr1	99470117	rs144194271	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,62:33:176:0.352:2	./.	./.	./.	./.	./.	./.	./.
chr1	99753658	rs148143169	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,86:29:182:0.473:2	./.	./.	./.	./.
chr1	100154554	rs35183456	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,14:32:32:0.438:2	./.	./.	./.	./.	./.	./.
chr1	100174670	rs12145706	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,18:28:32:0.563:2	./.	./.	./.	./.
chr1	100178020	rs200193081	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,67:31:136:0.493:2	0/1:43,27:31:70:0.386:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	100195220	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,60:33:192:0.313:2
chr1	100203648	rs7537296	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:128,62:31:190:0.326:2	./.	0/1:3,114:31:117:0.974:2	0/1:117,77:31:194:0.397:2	0/1:105,75:32:180:0.417:2	0/1:104,60:31:164:0.366:2	./.
chr1	100203693	rs7514021	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,6:32:18:0.333:2	./.	0/1:94,54:31:148:0.365:2	./.	0/1:2,95:31:97:0.979:2	0/1:81,82:31:163:0.503:2	0/1:93,71:32:164:0.433:2	0/1:79,63:32:142:0.444:2	./.
chr1	100206425	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,6:32:129:0.047:2	./.	./.	./.	./.	./.
chr1	100207818	rs41285734	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,29:33:74:0.392:2	./.	./.	./.	./.
chr1	100316589	rs2307130	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,19:33:51:0.373:2	0/1:17,15:32:32:0.469:2	./.	0/1:0,37:32:37:1.00:2	0/1:11,7:32:18:0.389:2	./.	0/1:10,17:32:27:0.630:2	0/1:36,14:32:50:0.280:2	./.	0/1:25,15:32:41:0.375:2	0/1:0,57:33:57:1.00:2
chr1	100327026	rs2307129	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,28:32:54:0.519:2	0/1:28,37:32:65:0.569:2	0/1:79,44:32:123:0.358:2	./.	./.
chr1	100336361	rs2230306	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:57,31:33:88:0.352:2	0/1:31,26:32:57:0.456:2	./.	0/1:1,69:31:70:0.986:2	0/1:38,28:31:66:0.424:2	./.	0/1:0,56:32:56:1.00:2	0/1:0,60:32:60:1.00:2	0/1:61,35:33:96:0.365:2	0/1:32,32:32:64:0.500:2	0/1:0,112:32:112:1.00:2
chr1	100358103	rs3753494	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,57:32:110:0.518:2	0/1:50,53:32:103:0.515:2	./.	./.
chr1	100361925	rs2230307	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,52:32:149:0.349:2	0/1:36,39:32:76:0.520:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	100379198	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:33:113:0.035:2	./.	./.
chr1	100472604	rs534252	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:11,16:32:27:0.593:2	0/1:11,3:33:14:0.214:2	./.	./.	0/1:5,8:32:13:0.615:2	./.	./.	./.	./.	./.	./.
chr1	100515497	rs17121792	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,34:30:83:0.410:2	0/1:23,27:29:50:0.540:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	100533712	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:33:100:0.040:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	100572459	rs17121889	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,44:31:126:0.349:2	0/1:57,28:31:85:0.329:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	100575933	rs13375867	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,57:32:127:0.449:2	0/1:49,32:31:81:0.395:2	0/1:9,9:32:18:0.500:2	0/1:3,158:31:161:0.981:2	./.	./.	0/1:42,35:32:77:0.455:2	./.	./.	0/1:68,56:32:124:0.452:2	0/1:0,189:32:189:1.00:2
chr1	100598866	rs472498	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,18:31:38:0.474:2	0/1:8,18:31:26:0.692:2	0/1:0,7:32:7:1.00:2	0/1:0,35:31:35:1.00:2	0/1:20,29:31:49:0.592:2	0/1:0,44:30:44:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,45:32:45:1.00:2
chr1	100598867	rs687513	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,18:30:38:0.474:2	0/1:8,18:31:26:0.692:2	0/1:0,7:32:7:1.00:2	0/1:0,35:32:35:1.00:2	0/1:19,29:31:48:0.604:2	0/1:0,44:30:44:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,45:32:45:1.00:2
chr1	100602507	rs200608313	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,42:33:93:0.452:2	./.	./.
chr1	100609639	rs6681721	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,22:32:47:0.468:2	0/1:31,17:32:48:0.354:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	100671866	rs34229137	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:28:8:1.00:2	./.	./.	0/1:6,3:30:9:0.333:2	./.	./.	0/1:4,7:26:11:0.636:2	0/1:4,8:29:12:0.667:2
chr1	100672060	rs12021720	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:33:51:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,60:32:60:1.00:2	0/1:32,24:31:56:0.429:2	0/1:0,64:32:64:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,45:33:45:1.00:2	0/1:0,73:33:73:1.00:2
chr1	100736221	rs77300480	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:32:11:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	100817384	rs28361189	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,9:32:19:0.474:2	./.	./.	./.	./.	./.	./.
chr1	100949860	rs2270694	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:15,3:32:18:0.167:2	0/1:3,7:32:10:0.700:2	./.	./.	0/1:14,6:31:20:0.300:2	./.	./.	./.	./.	./.	./.
chr1	101005855	rs2809818	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:33:27:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,3:33:3:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,22:32:22:1.00:2	0/1:11,14:33:25:0.560:2	0/1:0,17:33:17:1.00:2	0/1:0,41:33:41:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,29:33:29:1.00:2
chr1	101006043	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,4:32:38:0.105:2	./.	./.	./.	./.	./.	./.
chr1	101006240	rs41309189	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,22:32:40:0.550:2	0/1:10,12:32:22:0.545:2	./.	0/1:18,12:30:30:0.400:2	0/1:8,8:32:16:0.500:2	./.	./.	./.	./.	./.	./.
chr1	101006577	rs2030048	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:64,47:33:111:0.423:2	0/1:38,22:32:60:0.367:2	0/1:0,8:32:8:1.00:2	./.	0/1:35,38:32:73:0.521:2	./.	0/1:43,43:32:86:0.500:2	0/1:59,67:32:126:0.532:2	./.	./.	./.
chr1	101007036	rs2809817	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:34,22:28:56:0.393:2	0/1:25,22:28:47:0.468:2	./.	./.	0/1:27,25:28:52:0.481:2	./.	./.	0/1:52,49:28:101:0.485:2	./.	./.	./.
chr1	101007055	rs2030049	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:1,36:32:37:0.973:2	0/1:0,6:32:6:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,68:31:68:1.00:2	0/1:51,12:32:63:0.190:2	0/1:1,69:32:70:0.986:2	0/1:0,81:33:81:1.00:2	0/1:0,45:33:45:1.00:2	0/1:0,71:32:71:1.00:2
chr1	101007459	rs4615860	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:64,55:31:119:0.462:2	0/1:46,22:32:68:0.324:2	./.	0/1:60,49:32:109:0.450:2	0/1:60,43:32:103:0.417:2	./.	./.	./.	./.	./.	./.
chr1	101007504	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:33:95:0.042:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	101188639	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,19:34:32:0.594:2	./.	./.
chr1	101190447	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,3:33:54:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	101200108	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:33:77:0.052:2	./.	./.
chr1	101203698	rs3176878	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,82:31:83:0.988:2	0/1:1,55:32:56:0.982:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	101203827	rs3176879	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,112:32:112:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,118:31:118:1.00:2	0/1:0,81:31:81:1.00:2	0/1:0,131:31:131:1.00:2	0/1:0,87:31:87:1.00:2	0/1:78,69:31:147:0.469:2	0/1:0,143:32:143:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,125:32:125:1.00:2
chr1	101339977	rs184097400	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,25:30:58:0.431:2	./.	./.	./.	./.	./.	./.
chr1	101387303	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:34:62:0.065:2	./.
chr1	101706246	rs114115083	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,85:33:164:0.518:2	0/1:54,65:32:119:0.546:2	./.	./.
chr1	102269923	rs111710000	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,29:31:59:0.492:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	102270424	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,4:33:34:0.118:2	./.
chr1	102296279	rs10493973	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,44:33:72:0.611:2	0/1:26,23:32:49:0.469:2	./.	./.	./.	0/1:60,47:32:107:0.439:2	./.	0/1:59,58:32:118:0.496:2	./.	./.	0/1:81,56:32:137:0.409:2
chr1	103352451	rs2229783	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,126:31:126:1.00:2	0/1:1,61:30:62:0.984:2	0/1:8,8:27:16:0.500:2	0/1:75,91:30:166:0.548:2	0/1:0,94:29:94:1.00:2	0/1:61,76:30:137:0.555:2	0/1:0,109:29:110:1.00:2	0/1:96,69:31:165:0.418:2	0/1:0,186:31:186:1.00:2	0/1:6,143:30:149:0.960:2	0/1:97,87:30:184:0.473:2
chr1	103354115	rs17127203	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,28:32:58:0.483:2	./.	./.	./.
chr1	103354138	rs1676486	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,40:31:41:0.976:2	0/1:0,16:32:16:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,34:32:34:1.00:2	0/1:1,38:32:39:0.974:2	0/1:2,41:32:43:0.953:2	0/1:23,26:32:49:0.531:2	0/1:0,68:33:68:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,54:32:54:1.00:2
chr1	103354424	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:31:140:0.029:2
chr1	103354428	rs1763347	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:33:103:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,7:33:7:1.00:2	0/1:3,97:33:101:0.970:2	0/1:0,66:33:66:1.00:2	./.	0/1:1,65:33:66:0.985:2	0/1:34,46:33:80:0.575:2	0/1:1,111:34:112:0.991:2	0/1:0,72:33:72:1.00:2	0/1:0,133:33:133:1.00:2
chr1	103379918	rs3753841	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:33:51:1.00:2	0/1:0,25:33:25:1.00:2	0/1:2,4:32:6:0.667:2	0/1:23,39:32:62:0.629:2	0/1:0,45:33:45:1.00:2	0/1:18,38:32:56:0.679:2	0/1:0,33:33:33:1.00:2	0/1:44,29:32:73:0.397:2	0/1:0,76:33:76:1.00:2	0/1:0,50:32:50:1.00:2	0/1:30,58:32:88:0.659:2
chr1	103405892	rs17127270	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,16:30:46:0.348:2	./.	./.	./.	./.	0/1:39,28:32:67:0.418:2
chr1	103427407	rs1012281	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,45:33:88:0.511:2
chr1	103444679	rs11164649	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:33:30:1.00:2	0/1:0,28:32:28:1.00:2	0/1:2,2:34:4:0.500:2	0/1:15,35:33:50:0.700:2	0/1:0,36:32:36:1.00:2	0/1:0,43:32:43:1.00:2	0/1:20,16:32:36:0.444:2	0/1:0,44:32:44:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,32:31:32:1.00:2	./.
chr1	103468295	rs2622875	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:30:9:0.444:2	0/1:46,25:31:71:0.352:2	./.	./.	./.	./.	./.	./.	./.
chr1	103468336	.	A	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:41,15:15:56:0.268:2	./.	./.	0/1:46,17:17:63:0.270:2	0/1:21,14:15:35:0.400:2	0/1:48,21:16:69:0.304:2	0/1:26,11:13:37:0.297:2	0/1:63,36:15:99:0.364:2	0/1:54,27:14:81:0.333:2	0/1:33,14:17:49:0.298:2	0/1:55,25:16:81:0.313:2
chr1	103468767	rs12136577	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,25:32:53:0.472:2	./.	./.	./.	0/1:64,38:33:102:0.373:2
chr1	103470191	rs111841420	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,17:30:30:0.567:2	0/1:57,73:30:130:0.562:2	./.	./.	./.	./.	./.	./.	./.
chr1	103487244	rs34587338	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,7:33:12:0.583:2	0/1:37,48:33:85:0.565:2	./.	./.	./.	./.	./.	./.	./.
chr1	103488480	rs141036911	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,17:32:26:0.654:2	./.	./.	./.	./.	./.	./.	./.
chr1	103491461	rs12731843	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,27:32:49:0.551:2	./.	./.	./.	./.	./.	./.	./.
chr1	103496792	rs71664966	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:32:5:1.00:2	0/1:12,15:33:27:0.556:2	./.	./.	./.	./.	./.	./.	./.
chr1	103548497	rs11164663	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,58:33:90:0.644:2
chr1	103573656	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:31:68:0.059:2	./.	./.	./.	./.
chr1	104114279	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,6:29:198:0.030:2	./.	0/1:128,69:32:197:0.350:2	./.	./.	./.	./.	./.
chr1	104114299	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:194,5:30:199:0.025:2	./.	0/1:187,6:30:193:0.031:2	./.	./.	./.	./.	./.
chr1	104114758	rs140074022	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.	0/1:192,5:32:197:0.025:2	./.	./.	./.
chr1	104114866	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:193,4:32:197:0.020:2	0/1:182,5:33:187:0.027:2	./.	0/1:178,4:33:182:0.022:2	./.	./.	./.	./.
chr1	104115722	rs4098273	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,12:32:196:0.061:2	0/1:170,29:31:199:0.146:2	./.	0/1:194,5:31:199:0.025:2	0/1:179,18:32:197:0.091:2	./.	./.	./.
chr1	104115729	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:187,9:29:196:0.046:2	0/1:188,12:28:200:0.060:2	./.	./.	0/1:187,9:30:196:0.046:2	./.	./.	./.
chr1	104115822	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:193,6:33:199:0.030:2	0/1:119,4:33:123:0.033:2	./.	0/1:95,4:31:99:0.040:2	0/1:185,5:33:190:0.026:2	0/1:192,6:33:198:0.030:2	./.	./.
chr1	104115867	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:186,6:31:192:0.031:2	./.	./.	./.	0/1:176,14:30:190:0.074:2	./.	0/1:187,5:31:192:0.026:2	./.
chr1	104116413	rs17851840	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,93:32:188:0.495:2	0/1:85,83:32:169:0.494:2	./.	./.	./.	./.	./.	./.
chr1	104116505	rs201535188	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,7:30:182:0.038:2	./.	./.	0/1:187,8:27:195:0.041:2	./.
chr1	104116530	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:144,7:25:151:0.046:2	0/1:167,5:27:172:0.029:2	./.	./.	./.	./.	./.
chr1	104116532	.	C	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:173,4:32:179:0.023:2	./.	./.	0/1:170,5:31:175:0.029:2	0/1:139,6:33:145:0.041:2	0/1:160,7:25:167:0.042:2	0/1:162,4:32:167:0.024:2	./.	./.	./.	./.
chr1	104116536	.	A	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:168,5:30:173:0.029:2	0/1:137,6:31:143:0.042:2	0/1:158,5:31:163:0.031:2	./.	./.	./.	./.	./.
chr1	104116544	rs137860562	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,36:31:144:0.250:2	./.	./.	./.
chr1	104116929	rs369145442	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,7:31:62:0.113:2	./.	./.	./.
chr1	104116937	rs200275225	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,61:34:108:0.565:2	./.	./.
chr1	104117011	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,4:31:32:0.125:2	./.	0/1:28,3:31:31:0.097:2	./.	./.	./.	./.	./.
chr1	104117852	rs147215616	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,66:33:153:0.431:2	./.	./.
chr1	104117887	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,5:32:103:0.049:2	./.	./.	0/1:103,6:30:109:0.055:2	./.	./.	./.
chr1	104117929	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,4:28:69:0.058:2	./.	./.	./.	./.	./.	./.
chr1	104117947	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,5:30:60:0.083:2	./.	./.	./.	./.	./.	./.
chr1	104118069	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:186,6:30:192:0.031:2	./.	./.	0/1:189,5:32:194:0.026:2	./.	./.	./.
chr1	104118108	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:150,6:31:156:0.038:2	./.	./.	./.	./.	./.	./.
chr1	104120142	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,5:32:190:0.026:2	./.	./.	0/1:109,8:31:117:0.068:2	0/1:168,10:32:178:0.056:2	./.	0/1:172,4:33:177:0.023:2	./.
chr1	104120155	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:160,5:32:165:0.030:2	0/1:98,4:31:102:0.039:2	./.	0/1:89,8:31:97:0.082:2	0/1:139,12:30:151:0.079:2	./.	0/1:152,4:32:156:0.026:2	./.
chr1	104120227	rs151132065	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,55:32:130:0.423:2
chr1	104122014	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,7:33:197:0.036:2	0/1:162,5:31:167:0.030:2	./.	./.	./.	./.	./.	./.
chr1	104122032	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:182,6:31:188:0.032:2	0/1:157,9:31:166:0.054:2	0/1:191,6:31:197:0.030:2	0/1:149,4:31:153:0.026:2	0/1:191,5:31:196:0.026:2	./.	./.	./.
chr1	104122044	rs370640522	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:176,5:33:181:0.028:2	./.	./.	0/1:166,11:31:177:0.062:2	0/1:144,13:31:157:0.083:2	0/1:168,9:31:177:0.051:2	./.	0/1:173,6:30:179:0.034:2	./.	0/1:168,4:31:172:0.023:2	./.
chr1	104122083	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:34:111:0.036:2	./.	./.
chr1	104122119	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,3:33:45:0.067:2	./.	./.
chr1	104160069	rs369993142	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.	./.	./.
chr1	104160117	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2	0/1:173,22:31:195:0.113:2	./.	./.	./.	./.	./.
chr1	104160137	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,6:30:196:0.031:2	./.	./.	./.	./.	./.
chr1	104160209	rs150128174	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,6:32:197:0.031:2	./.	./.	./.	./.
chr1	104160600	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:99,93:30:192:0.484:2	./.	./.	./.	./.	./.	./.
chr1	104160606	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.	./.
chr1	104160710	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:148,8:32:156:0.051:2	./.	./.	0/1:176,4:32:180:0.022:2	./.	./.	./.
chr1	104161715	rs201745025	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,4:31:98:0.041:2	./.	./.	./.	./.	./.	./.	./.	0/1:196,4:32:200:0.020:2
chr1	104162293	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:33:187:0.022:2	./.	./.	./.
chr1	104162351	rs140204075	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,39:31:147:0.265:2	./.	./.	0/1:130,51:31:181:0.282:2	./.
chr1	104163262	rs201666814	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,29:31:96:0.302:2	0/1:71,10:32:81:0.123:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	104163266	rs141685988	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:68,26:31:94:0.277:2	0/1:67,9:31:76:0.118:2	./.	./.	./.	./.	0/1:20,8:31:28:0.286:2	0/1:112,18:31:130:0.138:2	0/1:60,15:31:75:0.200:2	0/1:66,20:31:86:0.233:2	./.
chr1	104164458	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,5:31:195:0.026:2	./.	./.	0/1:175,5:32:180:0.028:2	0/1:185,5:32:190:0.026:2	./.	./.	./.
chr1	104166496	rs1140401	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:146,35:31:181:0.193:2	0/1:158,37:29:195:0.190:2	0/1:68,28:29:96:0.292:2	0/1:2,187:30:189:0.989:2	0/1:122,69:29:191:0.361:2	0/1:175,19:28:194:0.098:2	0/1:160,37:30:197:0.188:2	0/1:176,18:30:194:0.093:2	0/1:152,47:31:199:0.236:2	0/1:160,33:30:193:0.171:2	0/1:91,92:29:183:0.503:2
chr1	104166598	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:32:156:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	104166603	rs200968096	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:33:137:0.029:2
chr1	104199055	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:128,5:31:133:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	104200553	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:34:197:0.025:2	./.	./.	./.	./.
chr1	104200598	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,7:29:199:0.035:2	./.	./.	./.	./.
chr1	104201109	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:171,25:33:196:0.128:2	0/1:181,13:32:195:0.067:2	./.	./.	./.	./.	./.	./.
chr1	104201179	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:165,32:32:197:0.162:2	0/1:181,19:32:200:0.095:2	./.	./.	./.	./.	./.	./.
chr1	104203251	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:157,38:32:195:0.195:2	0/1:190,8:31:198:0.040:2	./.	./.	./.	./.	./.	./.
chr1	104233963	rs199554865	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:175,24:32:199:0.121:2	0/1:187,10:31:197:0.051:2	./.	./.	./.	./.	./.	./.
chr1	104236035	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:178,21:33:199:0.106:2	0/1:184,15:33:199:0.075:2	./.	./.	./.	./.	./.	./.
chr1	104236105	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:183,14:31:197:0.071:2	0/1:191,7:32:198:0.035:2	./.	./.	./.	./.	./.	./.
chr1	104238159	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,14:32:143:0.098:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	104293194	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:155,17:32:172:0.099:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	104295248	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,15:33:200:0.075:2	./.	./.	./.	./.	./.	./.	./.
chr1	104295318	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:162,37:33:199:0.186:2	0/1:171,26:32:197:0.132:2	./.	./.	./.	./.	./.	./.
chr1	104297389	rs140363602	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:171,26:32:197:0.132:2	0/1:173,26:30:199:0.131:2	./.	./.	./.	./.	./.	./.
chr1	107599853	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,4:32:68:0.059:2	./.	./.	./.	./.	./.	./.
chr1	107599918	rs2232016	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,92:30:94:0.989:2	0/1:33,38:31:71:0.535:2	./.	./.
chr1	107600869	rs3791185	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,5:32:8:0.625:2	0/1:39,35:32:75:0.473:2	./.	0/1:46,44:32:91:0.489:2	0/1:28,28:32:56:0.500:2	./.	./.	0/1:33,25:32:58:0.431:2	0/1:52,60:32:112:0.536:2
chr1	107961196	rs17530804	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,33:32:67:0.493:2	./.	./.	./.	./.	0/1:48,47:33:95:0.495:2	./.	./.
chr1	107979396	rs480392	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,157:33:157:1.00:2	0/1:0,116:33:116:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,163:33:163:1.00:2	0/1:0,176:32:176:1.00:2	0/1:1,176:32:177:0.994:2	0/1:0,186:33:186:1.00:2	0/1:0,177:33:177:1.00:2	0/1:0,173:33:173:1.00:2	0/1:1,140:32:141:0.993:2	0/1:0,169:32:169:1.00:2
chr1	108138961	rs17229705	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,20:32:50:0.400:2	./.	./.	./.
chr1	108152591	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,3:34:49:0.063:2	./.	./.	./.
chr1	108185301	rs12403266	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,34:33:65:0.523:2	0/1:21,24:32:45:0.533:2	0/1:23,25:32:48:0.521:2	./.	./.	./.
chr1	108185309	rs12410676	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,35:32:66:0.530:2	./.	0/1:22,23:32:45:0.511:2	./.	./.	./.
chr1	108307727	rs7528153	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,94:32:97:0.969:2	0/1:0,52:32:52:1.00:2	0/1:0,18:31:18:1.00:2	0/1:2,112:32:114:0.982:2	./.	0/1:59,52:31:111:0.468:2	0/1:4,73:32:77:0.948:2	0/1:65,51:32:116:0.440:2	0/1:85,59:32:144:0.410:2	0/1:47,38:32:85:0.447:2	0/1:1,133:32:134:0.993:2
chr1	108313258	rs6583048	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,76:33:77:0.987:2	0/1:0,42:33:42:1.00:2	0/1:0,10:31:10:1.00:2	0/1:2,92:32:94:0.979:2	0/1:43,22:32:65:0.338:2	0/1:66,38:32:104:0.365:2	0/1:3,53:32:56:0.946:2	0/1:67,36:32:103:0.350:2	0/1:73,34:34:107:0.318:2	0/1:49,30:33:79:0.380:2	0/1:1,121:33:122:0.992:2
chr1	108728484	rs862493	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:53,54:33:108:0.505:2	0/1:35,26:33:61:0.426:2	./.	./.	0/1:32,31:32:63:0.492:2	./.	./.	./.	0/1:63,65:33:128:0.508:2	./.	0/1:86,51:33:137:0.372:2
chr1	108769358	rs371824699	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,10:29:48:0.208:2	./.	./.	0/1:152,46:30:198:0.232:2	./.	./.	0/1:164,27:31:191:0.141:2	0/1:186,12:31:198:0.061:2	./.
chr1	108771721	rs79996376	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,8:29:24:0.333:2	0/1:138,58:29:196:0.296:2	./.	./.	0/1:141,57:29:198:0.288:2	0/1:131,62:29:193:0.321:2	./.	0/1:102,92:29:194:0.474:2	0/1:133,56:28:189:0.296:2
chr1	108775757	.	A	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:163,32:32:195:0.164:2	0/1:151,43:31:194:0.222:2	./.	./.	./.	0/1:157,39:31:196:0.199:2	./.	./.	./.	./.	./.
chr1	108775810	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:186,11:32:197:0.056:2	0/1:191,6:27:197:0.030:2	0/1:190,8:31:198:0.040:2	0/1:186,13:32:200:0.065:2	./.	0/1:189,7:33:196:0.036:2	0/1:174,24:32:198:0.121:2	0/1:183,13:32:196:0.066:2
chr1	108777900	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:104,93:32:197:0.472:2	0/1:125,72:32:197:0.365:2	0/1:117,23:31:140:0.164:2	./.	0/1:164,34:31:198:0.172:2	0/1:62,136:31:198:0.687:2	./.	./.	0/1:157,42:33:199:0.211:2	0/1:161,36:32:197:0.183:2	./.
chr1	108779924	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,10:30:79:0.128:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	108781440	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:137,49:32:186:0.263:2	0/1:146,49:32:195:0.251:2	0/1:162,26:32:188:0.138:2	./.	0/1:172,21:32:193:0.109:2	0/1:128,65:32:193:0.337:2	./.	./.	./.	0/1:178,15:33:193:0.078:2	./.
chr1	108781556	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:148,20:31:169:0.119:2	0/1:157,18:32:175:0.103:2	./.	./.	./.	./.	0/1:145,16:31:161:0.099:2	./.	./.	./.	./.
chr1	108786278	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:172,25:33:197:0.127:2	0/1:170,27:33:197:0.137:2	./.	./.	./.	0/1:163,35:32:198:0.177:2	./.	./.	./.	./.	./.
chr1	108993329	rs201998872	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:155,41:33:196:0.209:2	0/1:165,27:33:192:0.141:2	./.	./.	./.	0/1:174,24:32:198:0.121:2	./.	./.	./.	./.	./.
chr1	108998033	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:177,17:32:194:0.088:2	0/1:163,34:32:197:0.173:2	./.	./.	./.	./.	0/1:174,23:32:197:0.117:2	./.	./.	./.	./.
chr1	108998149	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:131,58:33:189:0.307:2	0/1:134,62:32:196:0.316:2	0/1:142,34:31:176:0.193:2	./.	0/1:166,28:31:194:0.144:2	0/1:96,96:32:192:0.500:2	./.	./.	./.	0/1:165,24:33:189:0.127:2	./.
chr1	108999665	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,22:31:77:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	109001689	rs201936153	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:122,75:32:197:0.381:2	0/1:121,77:32:198:0.389:2	0/1:96,19:31:115:0.165:2	./.	0/1:165,35:32:200:0.175:2	0/1:71,123:31:194:0.634:2	./.	./.	0/1:166,32:33:198:0.162:2	0/1:153,46:32:199:0.231:2	./.
chr1	109002650	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,15:31:195:0.077:2	./.	./.	./.	./.
chr1	109003778	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,11:32:196:0.056:2	./.	0/1:193,5:32:198:0.025:2	./.	./.	./.	./.	0/1:186,9:31:195:0.046:2
chr1	109003831	.	T	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:137,34:32:171:0.199:2	0/1:151,40:31:192:0.209:2	./.	./.	./.	0/1:146,33:31:179:0.184:2	./.	./.	./.	./.	./.
chr1	109004552	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:152,5:26:157:0.032:2	./.	./.	./.	./.	./.	./.	0/1:189,6:25:195:0.031:2
chr1	109007881	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:32:38:0.079:2	0/1:124,4:30:128:0.031:2	./.	./.	./.
chr1	109010230	rs201618980	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:113,34:30:147:0.231:2	./.	./.	0/1:163,28:31:191:0.147:2	./.	./.	0/1:144,51:32:195:0.262:2	0/1:154,42:32:196:0.214:2	./.
chr1	109013235	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:35:156:0.026:2	./.	./.	./.	./.
chr1	109260475	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,4:34:66:0.061:2	./.	./.	./.	./.	./.	./.
chr1	109265029	rs4423040	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:53,40:33:93:0.430:2	0/1:31,24:32:55:0.436:2	./.	0/1:65,43:33:108:0.398:2	0/1:46,31:33:77:0.403:2	./.	0/1:0,77:32:77:1.00:2	0/1:60,48:33:108:0.444:2	0/1:0,80:33:80:1.00:2	0/1:47,47:33:94:0.500:2	0/1:1,86:32:87:0.989:2
chr1	109268441	rs11582005	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:53,68:31:121:0.562:2	0/1:51,62:32:113:0.549:2	./.	./.	./.	./.	0/1:80,103:31:183:0.563:2	./.	0/1:1,190:32:191:0.995:2	./.	0/1:92,95:31:187:0.508:2
chr1	109268573	rs4494160	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,151:32:154:0.981:2	0/1:1,105:32:106:0.991:2	0/1:22,7:32:29:0.241:2	0/1:94,94:33:188:0.500:2	0/1:2,141:31:145:0.986:2	0/1:0,181:32:181:1.00:2	0/1:0,179:32:179:1.00:2	0/1:94,91:32:185:0.492:2	0/1:0,176:33:176:1.00:2	0/1:105,65:32:170:0.382:2	0/1:1,174:32:175:0.994:2
chr1	109271348	rs11583590	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,65:33:184:0.353:2
chr1	109273456	rs4970809	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	0/1:53,37:31:90:0.411:2	0/1:2,86:32:88:0.977:2	0/1:52,50:32:102:0.490:2	0/1:50,47:30:97:0.485:2	0/1:0,83:32:83:1.00:2	0/1:40,24:32:64:0.375:2	0/1:0,69:32:69:1.00:2
chr1	109289353	rs1124427	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,22:32:22:1.00:2	0/1:64,44:32:108:0.407:2	0/1:91,55:30:146:0.377:2	0/1:0,130:32:130:1.00:2	0/1:3,89:31:92:0.967:2	0/1:85,65:32:150:0.433:2	0/1:2,82:33:84:0.976:2	0/1:25,30:32:55:0.545:2	0/1:1,69:31:70:0.986:2
chr1	109338861	rs1127635	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,24:30:24:1.00:2	./.	0/1:67,65:30:132:0.492:2	0/1:1,138:30:139:0.993:2	0/1:80,67:30:147:0.456:2	0/1:103,61:30:164:0.372:2	0/1:4,172:32:177:0.977:2	0/1:80,81:31:161:0.503:2	0/1:0,190:31:191:1.00:2
chr1	109338877	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:32:165:0.024:2	./.	./.	./.	./.	./.
chr1	109351501	rs1149154	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,18:30:19:0.947:2	0/1:0,16:31:16:1.00:2	./.	0/1:16,15:31:31:0.484:2	0/1:14,4:31:18:0.222:2	./.	./.	0/1:10,18:30:28:0.643:2	./.	0/1:15,7:27:22:0.318:2	./.
chr1	109363232	rs1333130	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:2,26:33:28:0.929:2	0/1:0,9:33:9:1.00:2	./.	./.	0/1:16,7:34:23:0.304:2	./.	./.	0/1:11,4:33:15:0.267:2	./.	0/1:18,8:33:26:0.308:2	./.
chr1	109365842	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:136,4:31:140:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr1	109366286	rs7522157	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:30:13:0.385:2	./.	0/1:3,104:30:107:0.972:2	0/1:90,74:30:164:0.451:2	./.	./.	0/1:110,78:31:188:0.415:2	0/1:85,68:31:153:0.444:2	0/1:1,150:31:151:0.993:2
chr1	109369915	rs7551421	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,39:33:39:1.00:2	0/1:23,11:33:34:0.324:2	0/1:41,21:32:62:0.339:2	0/1:0,37:32:37:1.00:2	0/1:1,28:32:29:0.966:2	0/1:40,27:33:67:0.403:2	./.	0/1:53,38:32:91:0.418:2
chr1	109377070	rs12060255	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,8:32:25:0.320:2	./.	./.	0/1:10,9:32:19:0.474:2	./.	./.	./.	./.
chr1	109391662	rs11580913	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,12:33:17:0.706:2
chr1	109394564	rs17030016	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:31,48:29:79:0.608:2	0/1:20,22:28:42:0.524:2	./.	0/1:50,36:31:86:0.419:2	./.	./.	./.	./.	./.	0/1:36,56:29:92:0.609:2	./.
chr1	109394976	rs17621411	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,43:30:78:0.551:2	./.	./.	./.	./.	./.	./.
chr1	109394978	rs17563390	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,64:31:139:0.460:2
chr1	109395105	rs1277207	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:77,38:32:115:0.330:2	0/1:41,25:32:66:0.379:2	0/1:6,3:32:9:0.333:2	0/1:55,29:31:84:0.345:2	0/1:40,43:30:83:0.518:2	0/1:74,52:31:126:0.413:2	0/1:47,27:32:74:0.365:2	0/1:2,116:31:118:0.983:2	0/1:0,114:32:114:1.00:2	0/1:59,32:32:91:0.352:2	0/1:0,110:32:110:1.00:2
chr1	109395260	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,3:34:65:0.046:2
chr1	109440215	rs41279678	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,16:31:23:0.696:2	./.	0/1:17,7:31:24:0.292:2	./.	./.	./.	./.
chr1	109466858	rs705268	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,5:32:17:0.294:2	./.	0/1:64,55:31:119:0.462:2	0/1:95,73:31:168:0.435:2	0/1:74,48:32:122:0.393:2	./.	./.	./.	0/1:100,78:32:178:0.438:2
chr1	109474027	rs9727038	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,39:31:83:0.470:2	./.	./.
chr1	109477466	rs372290951	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:111,8:21:119:0.067:2	./.	./.	./.	0/1:108,8:19:116:0.069:2	./.	0/1:107,10:20:118:0.085:2	./.	0/1:123,9:24:132:0.068:2	./.	./.
chr1	109479978	rs168107	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,23:33:46:0.500:2	0/1:20,23:32:43:0.535:2	0/1:4,4:32:8:0.500:2	0/1:32,25:32:57:0.439:2	0/1:40,25:32:65:0.385:2	0/1:22,21:31:43:0.488:2	0/1:13,21:32:34:0.618:2	./.	./.	0/1:16,28:32:44:0.636:2	0/1:48,36:32:84:0.429:2
chr1	109486196	rs338466	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,115:30:118:0.975:2	0/1:0,73:29:73:1.00:2	0/1:8,3:30:11:0.273:2	0/1:78,91:30:169:0.538:2	./.	0/1:95,81:30:176:0.460:2	0/1:5,127:29:132:0.962:2	0/1:97,83:30:180:0.461:2	./.	0/1:72,77:30:149:0.517:2	0/1:93,67:30:160:0.419:2
chr1	109529213	rs41299563	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,85:33:164:0.521:2
chr1	109544943	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:74,4:31:78:0.051:2	./.	./.	./.	./.	./.	./.
chr1	109649162	rs62623711	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:31:8:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	109656931	rs139816507	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,52:30:149:0.349:2	./.	./.	./.
chr1	109656946	rs667524	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,9:28:20:0.450:2	0/1:88,47:26:135:0.348:2	0/1:75,44:27:119:0.370:2	0/1:88,40:28:128:0.313:2	0/1:61,31:28:92:0.337:2	0/1:90,48:27:138:0.348:2	0/1:0,109:29:109:1.00:2	./.	./.
chr1	109704525	rs74920406	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,44:31:112:0.393:2	0/1:27,17:31:44:0.386:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,41:32:94:0.436:2
chr1	109704618	rs678238	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:31:56:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,69:30:69:1.00:2	0/1:1,49:30:50:0.980:2	0/1:0,53:31:53:1.00:2	0/1:0,28:30:28:1.00:2
chr1	109714635	rs34364548	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,36:32:80:0.450:2	./.	./.	./.	./.
chr1	109735298	rs658779	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,85:30:168:0.506:2	0/1:48,58:30:106:0.547:2	0/1:1,36:30:37:0.973:2	0/1:0,167:29:167:1.00:2	0/1:97,76:28:173:0.439:2	./.	0/1:3,161:29:165:0.982:2	0/1:3,142:29:145:0.979:2	0/1:1,172:31:173:0.994:2	0/1:0,170:30:170:1.00:2	0/1:106,70:31:178:0.398:2
chr1	109735416	rs659543	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,60:31:133:0.455:2	0/1:44,31:32:75:0.413:2	0/1:0,17:32:17:1.00:2	0/1:0,167:33:167:1.00:2	0/1:89,71:31:160:0.444:2	./.	0/1:1,120:32:121:0.992:2	0/1:1,129:32:130:0.992:2	0/1:1,139:33:140:0.993:2	0/1:1,117:32:118:0.992:2	0/1:87,76:32:163:0.466:2
chr1	109737063	rs2359246	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,23:32:53:0.434:2	0/1:19,10:31:29:0.345:2	0/1:0,5:31:5:1.00:2	0/1:0,74:31:74:1.00:2	0/1:52,22:31:74:0.297:2	./.	0/1:0,55:31:55:1.00:2	0/1:2,70:31:72:0.972:2	0/1:0,72:32:72:1.00:2	0/1:0,44:31:44:1.00:2	0/1:41,34:31:75:0.453:2
chr1	109737090	rs2359245	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,28:32:63:0.444:2	0/1:21,9:31:30:0.300:2	0/1:0,6:31:6:1.00:2	0/1:0,78:31:78:1.00:2	0/1:63,29:31:93:0.315:2	./.	0/1:0,63:31:63:1.00:2	0/1:2,85:32:87:0.977:2	0/1:0,77:32:77:1.00:2	0/1:0,51:31:51:1.00:2	0/1:52,37:31:89:0.416:2
chr1	109737132	rs2359244	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,27:29:67:0.403:2	0/1:22,11:31:33:0.333:2	0/1:0,9:29:9:1.00:2	0/1:0,72:29:72:1.00:2	0/1:54,37:28:91:0.407:2	./.	0/1:0,59:29:59:1.00:2	0/1:0,103:29:103:1.00:2	0/1:0,83:29:83:1.00:2	0/1:1,60:30:61:0.984:2	0/1:67,28:30:95:0.295:2
chr1	109737172	rs2359243	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,23:32:53:0.434:2	0/1:18,16:32:34:0.471:2	0/1:0,13:30:13:1.00:2	0/1:0,60:31:60:1.00:2	0/1:33,36:31:69:0.522:2	./.	0/1:0,47:31:47:1.00:2	0/1:3,86:30:89:0.966:2	0/1:0,72:32:72:1.00:2	0/1:0,67:31:67:1.00:2	0/1:85,40:32:125:0.320:2
chr1	109742485	rs913179	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,24:32:24:1.00:2	0/1:0,13:32:13:1.00:2	./.	0/1:0,24:32:24:1.00:2	0/1:15,12:33:27:0.444:2	0/1:17,9:30:26:0.346:2	0/1:0,38:32:38:1.00:2	0/1:23,20:32:43:0.465:2	0/1:1,22:33:23:0.957:2	0/1:9,13:33:22:0.591:2	0/1:0,25:31:25:1.00:2
chr1	109745618	rs1052878	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:32:45:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,47:33:47:1.00:2	0/1:32,26:31:59:0.448:2	0/1:0,52:29:52:1.00:2
chr1	109771063	rs683182	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,28:33:83:0.337:2	0/1:31,22:33:53:0.415:2	0/1:3,6:34:9:0.667:2	0/1:0,109:32:109:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,85:32:85:1.00:2	0/1:40,36:33:76:0.474:2	0/1:0,113:33:113:1.00:2	0/1:44,52:34:96:0.542:2	0/1:0,84:33:84:1.00:2	0/1:2,106:33:108:0.981:2
chr1	109794252	rs454107	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,91:30:91:1.00:2	0/1:0,69:30:69:1.00:2	0/1:11,3:30:14:0.214:2	0/1:0,125:30:125:1.00:2	0/1:0,166:30:166:1.00:2	0/1:0,143:30:143:1.00:2	0/1:1,176:30:177:0.994:2	0/1:1,156:30:157:0.994:2	0/1:0,122:31:122:1.00:2	0/1:1,105:31:106:0.991:2	0/1:0,130:30:130:1.00:2
chr1	109794316	rs138919468	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,70:32:168:0.417:2
chr1	109795026	rs413380	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,41:30:41:1.00:2	0/1:0,29:29:29:1.00:2	./.	0/1:1,57:29:58:0.983:2	0/1:0,70:29:70:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,79:29:79:1.00:2	0/1:1,58:29:59:0.983:2	0/1:0,51:30:52:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,47:29:47:1.00:2
chr1	109795608	rs437444	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,75:32:77:0.974:2	0/1:0,40:32:40:1.00:2	./.	0/1:0,95:33:95:1.00:2	0/1:0,85:31:85:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,111:33:111:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,86:33:86:1.00:2	0/1:1,65:32:66:0.985:2	0/1:0,82:32:82:1.00:2
chr1	109801121	rs684138	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,72:32:144:0.500:2	./.	./.	./.	0/1:87,91:32:178:0.511:2	./.	0/1:83,60:32:143:0.420:2	./.
chr1	109801620	rs200857942	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	109806313	rs653635	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,62:31:148:0.419:2	./.	./.	./.	0/1:94,49:30:144:0.343:2	./.	0/1:61,46:30:107:0.430:2	./.
chr1	109806834	rs6698843	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,17:32:26:0.654:2	0/1:6,11:31:17:0.647:2	./.	0/1:12,18:30:30:0.600:2	0/1:1,44:30:45:0.978:2	0/1:18,31:31:49:0.633:2	./.	./.	0/1:10,9:31:19:0.474:2	0/1:9,13:31:22:0.591:2	0/1:12,16:31:29:0.571:2
chr1	109807099	rs6689614	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,13:32:33:0.394:2	0/1:13,13:32:26:0.500:2	./.	0/1:32,32:32:64:0.500:2	0/1:0,78:31:78:1.00:2	0/1:41,30:31:71:0.423:2	./.	./.	0/1:26,26:32:52:0.500:2	0/1:16,23:31:39:0.590:2	0/1:20,24:31:44:0.545:2
chr1	109810183	rs61761209	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,26:30:48:0.542:2	./.
chr1	109810544	rs2281894	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	0/1:0,52:30:52:1.00:2	./.	0/1:24,25:32:49:0.510:2	./.	./.
chr1	109815304	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,3:33:48:0.063:2	./.	./.	./.	./.
chr1	109816176	rs441853	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,3:29:3:1.00:2	0/1:0,5:29:5:1.00:2	./.	0/1:0,6:26:6:1.00:2	0/1:0,5:25:5:1.00:2	0/1:0,4:30:4:1.00:2	./.	0/1:0,8:28:8:1.00:2	0/1:0,4:32:4:1.00:2	./.	./.
chr1	109824250	rs35358959	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,51:31:139:0.367:2	./.	./.
chr1	109825360	rs643457	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:33:40:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,90:32:90:1.00:2	0/1:1,106:33:107:0.991:2	0/1:1,93:33:94:0.989:2	0/1:0,70:32:70:1.00:2	0/1:0,80:32:80:1.00:2
chr1	109836835	rs3738777	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,21:30:21:1.00:2	./.	0/1:80,98:29:178:0.551:2	./.	0/1:79,103:30:182:0.566:2	0/1:94,89:30:184:0.486:2	./.	0/1:75,91:30:166:0.548:2	0/1:97,87:30:184:0.473:2
chr1	109836842	rs646335	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,122:30:124:0.984:2	0/1:0,63:30:63:1.00:2	./.	0/1:1,164:30:166:0.994:2	0/1:98,75:29:173:0.434:2	0/1:0,164:30:164:1.00:2	0/1:104,70:30:174:0.402:2	0/1:100,76:30:176:0.432:2	0/1:0,179:32:179:1.00:2	0/1:95,72:31:167:0.431:2	0/1:85,94:31:179:0.525:2
chr1	109838918	rs629001	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:31:35:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,35:31:35:1.00:2	0/1:1,44:30:45:0.978:2	0/1:0,50:32:50:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,47:30:47:1.00:2
chr1	109839433	rs1278285	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,163:32:163:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,187:32:187:1.00:2	0/1:0,186:33:186:1.00:2	0/1:0,191:32:191:1.00:2	0/1:0,175:33:175:1.00:2	0/1:0,176:32:176:1.00:2	0/1:0,188:33:188:1.00:2	0/1:0,183:32:183:1.00:2	0/1:0,153:32:153:1.00:2
chr1	109839738	rs3850615	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,70:31:163:0.429:2	./.	./.	./.	0/1:94,68:32:162:0.420:2	./.	./.	./.
chr1	109884775	rs2228604	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,116:32:116:1.00:2	0/1:0,95:32:95:1.00:2	0/1:14,9:32:23:0.391:2	0/1:0,137:32:137:1.00:2	./.	0/1:3,133:32:136:0.978:2	0/1:1,147:32:149:0.993:2	./.	0/1:88,65:32:154:0.425:2	0/1:2,117:32:119:0.983:2	0/1:1,137:32:138:0.993:2
chr1	109897100	rs72646560	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,32:33:83:0.386:2	./.	./.
chr1	109897103	rs11142	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:33:65:1.00:2	0/1:0,35:32:35:1.00:2	0/1:1,2:32:3:0.667:2	0/1:0,69:33:69:1.00:2	./.	0/1:0,56:33:56:1.00:2	0/1:0,51:33:51:1.00:2	./.	0/1:34,44:34:78:0.564:2	0/1:1,52:33:53:0.981:2	0/1:1,70:33:71:0.986:2
chr1	110019439	rs62623713	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,41:33:73:0.562:2	./.	./.
chr1	110019482	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,15:12:116:0.129:2	./.	./.	./.	./.	./.	./.	./.
chr1	110020553	rs372991704	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,73:31:157:0.468:2	./.	./.	./.	./.	./.	./.	./.
chr1	110028679	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,4:33:95:0.042:2	./.	./.	./.	./.	./.	./.	./.
chr1	110086451	rs17575798	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	0/1:11,8:30:19:0.421:2	./.
chr1	110148974	rs1799875	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:82,4:33:86:0.047:2	./.	0/1:5,183:32:188:0.973:2	0/1:81,82:32:163:0.503:2	0/1:105,94:32:199:0.472:2	0/1:91,86:33:177:0.486:2	0/1:99,91:33:190:0.479:2	0/1:95,95:33:190:0.500:2	0/1:83,89:33:172:0.517:2	0/1:0,180:33:181:1.00:2
chr1	110162918	rs28362580	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,9:30:19:0.474:2	./.	./.	./.	./.	./.	./.	0/1:65,51:30:116:0.440:2	./.
chr1	110163879	rs28362581	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,11:30:20:0.550:2	./.	./.	./.	./.	./.	./.	0/1:49,54:30:103:0.524:2	./.
chr1	110169450	rs75736595	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,7:18:43:0.163:2	./.	./.	./.	./.	0/1:34,9:16:43:0.209:2	./.	./.	./.	./.	./.
chr1	110170896	rs863978	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,60:29:60:1.00:2	0/1:0,28:28:28:1.00:2	./.	0/1:3,66:29:69:0.957:2	./.	0/1:0,76:28:76:1.00:2	0/1:0,121:29:121:1.00:2	./.	0/1:33,49:29:82:0.598:2	0/1:26,29:30:55:0.527:2	0/1:33,28:29:61:0.459:2
chr1	110173775	rs568686	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,104:31:104:1.00:2	0/1:0,66:31:66:1.00:2	./.	0/1:78,60:30:138:0.435:2	./.	0/1:67,73:30:140:0.521:2	0/1:83,83:31:166:0.500:2	./.	./.	./.	./.
chr1	110199045	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:33:96:0.042:2
chr1	110199368	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,5:27:115:0.043:2	./.	./.	./.	./.
chr1	110200256	rs375225696	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:105,5:32:110:0.045:2	./.	0/1:194,5:31:199:0.025:2	./.	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.	./.
chr1	110200266	rs145858198	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:107,5:33:113:0.045:2	./.	0/1:192,6:31:198:0.030:2	./.	./.	./.	./.	0/1:186,4:35:190:0.021:2	./.	./.
chr1	110200445	rs142265412	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,5:31:175:0.029:2	./.	./.	./.	./.	./.
chr1	110201644	rs17838158	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:186,5:32:191:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr1	110201699	rs506008	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,88:32:90:0.978:2	0/1:101,89:33:190:0.468:2	0/1:0,176:32:176:1.00:2	0/1:107,85:32:193:0.443:2	0/1:90,84:33:174:0.483:2	0/1:4,181:32:185:0.978:2	0/1:0,174:33:174:1.00:2	0/1:0,176:33:176:1.00:2	0/1:1,171:32:173:0.994:2
chr1	110201809	rs562996	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,26:31:27:0.963:2	0/1:77,74:32:151:0.490:2	0/1:4,83:31:87:0.954:2	0/1:66,65:31:131:0.496:2	0/1:56,41:32:97:0.423:2	0/1:1,119:31:120:0.992:2	0/1:0,135:33:135:1.00:2	0/1:3,104:31:107:0.972:2	0/1:0,150:31:150:1.00:2
chr1	110201812	rs563003	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,26:32:27:0.963:2	0/1:72,74:32:146:0.507:2	0/1:4,83:32:87:0.954:2	0/1:64,65:32:129:0.504:2	0/1:55,41:33:96:0.427:2	0/1:1,118:32:119:0.992:2	0/1:0,136:34:136:1.00:2	0/1:4,103:33:107:0.963:2	0/1:0,150:33:150:1.00:2
chr1	110210780	rs530021	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,20:31:48:0.417:2	0/1:12,11:30:23:0.478:2	0/1:0,4:31:4:1.00:2	0/1:39,37:31:77:0.487:2	0/1:0,56:30:56:1.00:2	0/1:40,39:30:79:0.494:2	0/1:0,55:31:55:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,31:31:31:1.00:2
chr1	110211531	rs374179090	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,4:31:87:0.046:2	./.	./.	./.	./.	./.	./.
chr1	110211933	rs2227960	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,5:29:110:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	110211956	rs592792	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:30:10:0.600:2	./.	0/1:100,58:31:158:0.367:2	./.	./.	./.	0/1:74,66:32:140:0.471:2	0/1:69,46:32:115:0.400:2	./.
chr1	110230787	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	110230839	rs112778559	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.
chr1	110231279	rs202193721	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,5:30:11:0.455:2	./.	0/1:95,6:31:101:0.059:2	0/1:1,3:26:4:0.750:2
chr1	110231302	rs72549311	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,5:31:98:0.051:2	./.	0/1:5,3:26:8:0.375:2	./.	0/1:15,3:31:18:0.167:2	./.	./.	./.
chr1	110231649	rs113677167	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,3:33:8:0.375:2	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2
chr1	110231663	rs113846795	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2
chr1	110231721	rs200487927	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	./.	./.	./.	./.	0/1:1,3:32:4:0.750:2	0/1:3,6:31:9:0.667:2	./.	./.	0/1:0,2:30:2:1.00:2
chr1	110231746	rs147668562	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,26:33:52:0.500:2	./.	0/1:3,188:32:191:0.984:2	./.	./.	./.	./.	./.	./.
chr1	110232983	rs140584594	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,5:34:16:0.313:2	./.	./.
chr1	110233138	rs74837985	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,4:31:4:1.00:2	0/1:0,2:31:2:1.00:2	0/1:154,9:32:163:0.055:2	0/1:192,5:29:197:0.025:2	0/1:181,14:30:195:0.072:2	0/1:6,30:31:36:0.833:2	0/1:3,32:32:35:0.914:2	0/1:26,80:32:106:0.755:2	0/1:3,56:32:59:0.949:2	0/1:174,21:32:196:0.108:2	0/1:3,38:32:41:0.927:2
chr1	110233147	rs1056806	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,63:31:157:0.401:2	./.	./.	./.	./.	0/1:121,15:32:136:0.110:2	./.	0/1:31,149:32:180:0.828:2	./.
chr1	110233153	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	110255748	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:182,8:32:190:0.042:2	./.	./.	./.	./.	./.	./.	0/1:185,5:31:190:0.026:2	./.	./.	0/1:189,5:31:194:0.026:2
chr1	110256067	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:63,4:35:67:0.060:2	./.	./.	0/1:120,5:34:125:0.040:2	./.	./.	./.	./.	0/1:163,4:35:167:0.024:2	./.	./.
chr1	110256075	rs2479390	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,59:32:148:0.399:2	0/1:59,50:32:109:0.459:2	./.	./.	./.	0/1:91,60:32:151:0.397:2
chr1	110256127	rs17854972	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,11:30:19:0.579:2	0/1:97,84:30:181:0.464:2	0/1:93,93:30:186:0.500:2	0/1:182,6:29:189:0.032:2	./.	./.	0/1:182,13:31:195:0.067:2	./.	./.
chr1	110256150	rs141656810	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:126,7:29:133:0.053:2	./.	0/1:181,6:30:187:0.032:2	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	0/1:191,6:31:197:0.030:2	0/1:189,6:33:195:0.031:2
chr1	110256160	rs147739570	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:139,6:31:145:0.041:2	./.	0/1:185,4:32:189:0.021:2	./.	./.	./.	./.	./.	0/1:193,5:31:198:0.025:2	0/1:183,7:33:191:0.037:2
chr1	110256162	rs144839885	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:33:197:0.025:2	./.	./.
chr1	110257590	rs2229059	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,11:32:23:0.478:2	0/1:94,58:33:153:0.382:2	0/1:39,20:32:59:0.339:2	./.	./.	./.	./.	./.	./.
chr1	110257659	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,4:31:77:0.052:2	./.	./.	./.	./.	./.	./.
chr1	110260019	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:31:67:0.060:2	./.	./.	./.	./.	./.
chr1	110279701	rs7483	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:47,52:31:99:0.525:2	0/1:29,17:31:46:0.370:2	./.	./.	./.	./.	0/1:67,63:30:130:0.485:2	0/1:79,61:30:140:0.436:2	0/1:75,55:32:130:0.423:2	0/1:0,107:31:107:1.00:2	./.
chr1	110279777	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,59:32:124:0.476:2	./.	./.	./.	./.	./.	./.	./.
chr1	110295772	rs1887547	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,26:30:69:0.377:2	0/1:21,18:30:39:0.462:2	0/1:1,9:30:10:0.900:2	0/1:60,53:30:113:0.469:2	0/1:45,51:29:96:0.531:2	./.	0/1:65,59:30:124:0.476:2	0/1:0,105:29:105:1.00:2	0/1:51,40:30:91:0.440:2	0/1:0,69:30:69:1.00:2	./.
chr1	110299691	rs11102001	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:39,54:31:93:0.581:2	0/1:29,22:31:51:0.431:2	./.	./.	./.	./.	0/1:79,71:31:150:0.473:2	./.	./.	./.	./.
chr1	110300441	rs3818562	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,8:30:12:0.667:2	0/1:48,39:30:87:0.448:2	./.	./.	./.	0/1:1,93:29:94:0.989:2	0/1:51,43:29:94:0.457:2	0/1:1,78:30:79:0.987:2	./.
chr1	110300504	rs10776700	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,101:32:101:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,18:33:18:1.00:2	0/1:1,143:32:146:0.993:2	0/1:1,106:32:107:0.991:2	0/1:0,137:32:137:1.00:2	0/1:0,120:32:120:1.00:2	0/1:0,143:32:143:1.00:2	0/1:0,131:33:131:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,139:32:139:1.00:2
chr1	110301260	rs6693815	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,15:32:43:0.349:2	0/1:16,7:31:23:0.304:2	0/1:4,6:28:10:0.600:2	0/1:34,40:32:74:0.541:2	0/1:57,31:31:88:0.352:2	./.	0/1:41,38:32:79:0.481:2	0/1:48,40:31:88:0.455:2	./.	./.	./.
chr1	110459990	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:31:121:0.033:2	./.	./.	./.	./.
chr1	110466338	rs333970	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,27:33:44:0.614:2	0/1:12,13:33:25:0.520:2	0/1:0,9:32:9:1.00:2	0/1:1,58:32:59:0.983:2	0/1:25,11:32:36:0.306:2	0/1:28,14:32:42:0.333:2	0/1:46,20:31:66:0.303:2	0/1:32,31:33:63:0.492:2	0/1:44,32:34:76:0.421:2	0/1:20,22:33:42:0.524:2	0/1:38,27:32:65:0.415:2
chr1	110466466	rs1058885	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:28,14:30:42:0.333:2	0/1:14,9:30:23:0.391:2	./.	./.	0/1:9,19:28:28:0.679:2	0/1:15,20:28:35:0.571:2	0/1:14,13:28:27:0.481:2	0/1:35,20:28:55:0.364:2	0/1:25,20:29:45:0.444:2	0/1:21,16:30:37:0.432:2	0/1:15,29:27:45:0.659:2
chr1	110466555	rs2229165	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,27:30:68:0.397:2	./.	./.	./.	./.	./.
chr1	110466709	rs333971	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:32:65:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,6:32:6:1.00:2	0/1:1,106:33:107:0.991:2	0/1:0,97:32:97:1.00:2	0/1:0,107:32:107:1.00:2	0/1:0,97:33:97:1.00:2	0/1:0,116:32:116:1.00:2	0/1:0,87:33:87:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,78:32:78:1.00:2
chr1	110466810	rs2229166	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,6:33:11:0.545:2	./.	./.	./.	0/1:8,9:33:17:0.529:2	./.
chr1	110467745	rs333972	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:33:66:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,63:33:63:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,59:33:59:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,70:33:70:1.00:2
chr1	110551700	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:30:69:0.058:2	./.	./.
chr1	110561046	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,7:24:105:0.067:2	./.	./.	./.	./.
chr1	110561048	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,5:31:107:0.047:2	./.	./.	./.	./.
chr1	110656011	rs12125479	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,23:31:44:0.523:2	0/1:23,17:31:40:0.425:2	./.	./.	./.	./.	./.	0/1:36,23:32:59:0.390:2
chr1	110709719	rs7527375	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,35:30:35:1.00:2	0/1:0,25:32:25:1.00:2	./.	0/1:33,12:29:45:0.267:2	./.	0/1:20,36:30:56:0.643:2	0/1:50,26:27:76:0.342:2	0/1:38,22:31:60:0.367:2	0/1:20,26:31:46:0.565:2	0/1:31,19:29:50:0.380:2	0/1:0,33:31:33:1.00:2
chr1	110709720	rs12737742	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,34:30:35:1.00:2	0/1:0,25:30:25:1.00:2	./.	./.	./.	0/1:20,36:30:56:0.643:2	./.	0/1:38,22:30:60:0.367:2	0/1:20,26:31:46:0.565:2	0/1:31,18:29:49:0.367:2	0/1:0,33:30:33:1.00:2
chr1	110709734	rs41281364	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,16:31:47:0.340:2	./.	./.	0/1:49,21:31:70:0.300:2	./.	./.	./.	./.
chr1	110717425	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:29:72:0.056:2
chr1	110735276	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:151,4:32:155:0.026:2	./.	./.	./.	./.	./.	./.
chr1	110738296	rs2784140	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:85,77:31:162:0.475:2	0/1:62,62:30:124:0.500:2	./.	./.	./.	./.	0/1:60,61:31:121:0.504:2
chr1	110740931	rs6685009	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:31:14:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	110766215	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.	./.	./.
chr1	110766454	rs59123361	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,18:31:53:0.340:2	./.	./.	./.	./.	0/1:20,26:33:46:0.565:2	./.	./.
chr1	110882444	rs814771	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,15:32:24:0.625:2	0/1:11,8:31:19:0.421:2	./.	0/1:7,15:31:22:0.682:2	0/1:15,18:30:33:0.545:2	0/1:0,20:29:20:1.00:2	0/1:6,16:27:22:0.727:2	./.	0/1:15,12:31:27:0.444:2	0/1:16,13:32:29:0.448:2	0/1:12,15:31:27:0.556:2
chr1	110883176	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:29:81:0.049:2
chr1	110883569	rs3738752	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:15,17:33:32:0.531:2	0/1:15,7:32:22:0.318:2	0/1:5,5:33:10:0.500:2	./.	0/1:29,27:32:56:0.482:2	./.	./.	./.	./.	./.	./.
chr1	110884693	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:31:82:0.049:2	./.	./.
chr1	110919678	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2	./.	./.
chr1	110924353	rs3738750	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:106,75:32:181:0.414:2	0/1:49,52:32:101:0.515:2	0/1:20,10:32:30:0.333:2	./.	0/1:77,39:32:116:0.336:2	./.	./.	./.	./.	./.	./.
chr1	110925550	rs35653868	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	110950277	rs6698159	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,106:32:194:0.546:2	./.	./.	./.
chr1	110950439	rs6674775	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,67:30:134:0.500:2	0/1:69,73:30:142:0.514:2	0/1:58,70:30:128:0.547:2	./.	0/1:62,41:30:103:0.398:2	0/1:51,53:30:104:0.510:2
chr1	110950462	rs11102099	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,53:31:94:0.564:2	./.	./.	./.	./.	0/1:49,54:31:103:0.524:2	./.	./.
chr1	110998854	rs7514102	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,7:32:13:0.538:2	0/1:4,5:26:9:0.556:2	0/1:1,3:31:4:0.750:2	0/1:12,7:31:19:0.368:2	0/1:24,9:29:33:0.273:2	./.	./.	0/1:16,18:31:34:0.529:2	0/1:5,8:33:13:0.615:2	./.	0/1:14,10:30:24:0.417:2
chr1	111060669	rs1281175	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,35:32:74:0.473:2	0/1:27,27:33:54:0.500:2	0/1:1,9:33:10:0.900:2	0/1:80,40:32:120:0.333:2	0/1:48,62:32:110:0.564:2	0/1:59,53:32:112:0.473:2	0/1:3,143:33:146:0.979:2	0/1:92,58:32:150:0.387:2	./.	0/1:58,38:34:96:0.396:2	0/1:0,102:33:102:1.00:2
chr1	111060752	rs34970857	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,58:32:116:0.500:2	0/1:39,24:32:63:0.381:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	111061062	rs1281174	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,7:32:18:0.389:2	0/1:9,7:32:16:0.438:2	0/1:0,2:36:2:1.00:2	0/1:15,7:32:22:0.318:2	0/1:3,12:32:15:0.800:2	0/1:4,11:32:15:0.733:2	0/1:0,13:33:13:1.00:2	0/1:19,10:32:29:0.345:2	./.	./.	0/1:0,13:34:13:1.00:2
chr1	111061549	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:34:186:0.022:2
chr1	111061653	rs3768456	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,68:32:154:0.442:2	0/1:52,40:32:92:0.435:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	111145990	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,16:32:118:0.136:2	./.
chr1	111216638	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,21:8:86:0.244:2	./.	./.	./.	./.	./.
chr1	111441829	rs1803259	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:31:27:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,2:30:2:1.00:2	0/1:20,23:31:43:0.535:2	0/1:21,5:31:26:0.192:2	0/1:26,22:31:48:0.458:2	0/1:0,31:32:31:1.00:2	0/1:44,17:32:61:0.279:2	0/1:0,51:33:51:1.00:2	0/1:0,29:32:29:1.00:2	./.
chr1	111494194	rs2232041	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:51,43:31:94:0.457:2	0/1:28,26:31:54:0.481:2	0/1:7,3:32:10:0.300:2	./.	0/1:30,18:30:48:0.375:2	./.	./.	./.	0/1:57,42:32:99:0.424:2	0/1:38,31:31:69:0.449:2	./.
chr1	111662499	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,19:33:42:0.452:2	./.	./.
chr1	111726838	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:33:168:0.024:2
chr1	111726869	rs3795823	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,10:32:23:0.435:2	0/1:82,89:31:171:0.520:2	0/1:1,103:31:104:0.990:2	0/1:87,66:31:153:0.431:2	0/1:85,75:31:160:0.469:2	./.	./.	./.	0/1:83,85:31:168:0.506:2
chr1	111730901	rs608881	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,47:32:116:0.405:2	0/1:1,136:33:137:0.993:2	0/1:59,46:32:105:0.438:2	./.
chr1	111731318	rs78859767	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,82:30:179:0.458:2	0/1:72,66:30:138:0.478:2	./.	./.	./.	./.	./.	./.
chr1	111731352	rs61756276	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,57:32:146:0.390:2	./.
chr1	111739812	rs151104089	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,20:30:38:0.526:2	./.	./.	./.	./.	./.
chr1	111741322	rs35184750	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,26:30:62:0.419:2	./.	./.	./.	./.	./.	./.
chr1	111777575	rs35041930	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,32:32:96:0.333:2	./.
chr1	111778325	rs11556868	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:31:12:0.583:2	./.	./.	./.	./.	0/1:70,45:31:115:0.391:2	0/1:0,102:32:102:1.00:2	./.	./.
chr1	111778328	rs151245802	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:31:119:0.034:2	./.	./.	./.
chr1	111783982	rs13721	C	T,A	.	PASS	AC=2,4;AF=0.111,0.222;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant10-variant11	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0/2:31:59:0.492:2	0/2:32:31:0.452:2	0/2:33:7:0.429:2	./.	0/1:30:61:0.967:2	./.	0/2:31:60:0.983:2	0/1:31:70:0.614:2	./.	./.	./.
chr1	111783996	rs2494007	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:33:62:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,9:34:9:1.00:2	0/1:0,84:33:84:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,63:33:63:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,55:34:55:1.00:2	0/1:0,54:33:54:1.00:2	0/1:0,55:33:55:1.00:2
chr1	111833517	rs12026825	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,6:31:11:0.545:2	./.	0/1:0,2:30:2:1.00:2	0/1:0,10:31:10:1.00:2	0/1:8,3:31:11:0.273:2	./.	0/1:7,9:32:16:0.563:2	./.	0/1:3,6:32:9:0.667:2	./.	./.
chr1	111854889	rs41282492	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,78:30:157:0.497:2	./.	0/1:54,52:30:106:0.491:2	0/1:54,56:30:110:0.509:2	0/1:45,39:29:84:0.464:2
chr1	111854895	rs41282494	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,68:30:146:0.469:2	./.	0/1:50,52:30:102:0.510:2	0/1:52,60:30:112:0.536:2	0/1:45,35:30:80:0.438:2
chr1	111854938	rs41282496	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,60:32:144:0.417:2	./.	0/1:52,38:32:90:0.422:2	0/1:46,60:32:106:0.566:2	0/1:53,38:32:91:0.418:2
chr1	111857154	rs2786152	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,20:33:46:0.435:2	0/1:11,7:32:18:0.389:2	./.	0/1:2,51:33:53:0.962:2	0/1:1,23:32:24:0.958:2	0/1:0,30:32:30:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,25:33:25:1.00:2	0/1:22,14:33:36:0.389:2	0/1:18,11:34:29:0.379:2	0/1:0,64:32:64:1.00:2
chr1	111857208	rs3818822	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,36:32:66:0.545:2	./.	./.	./.	./.	./.
chr1	111857951	rs61756687	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,43:32:77:0.558:2	./.	./.	./.	./.	./.	./.
chr1	111860707	rs143960572	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,5:31:106:0.047:2	./.	./.	0/1:55,5:31:60:0.083:2	0/1:88,6:33:94:0.064:2
chr1	111860723	rs151297358	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,5:30:87:0.057:2	./.	./.	0/1:41,8:30:49:0.163:2	0/1:58,7:29:65:0.108:2
chr1	111861822	rs17027410	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,58:30:137:0.423:2	./.	0/1:71,65:30:136:0.478:2	0/1:62,63:31:125:0.504:2	0/1:86,71:30:157:0.452:2
chr1	111861841	rs2275253	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:60,52:29:112:0.464:2	0/1:27,27:30:55:0.500:2	./.	0/1:0,127:29:127:1.00:2	0/1:0,134:29:134:1.00:2	0/1:0,142:29:142:1.00:2	0/1:4,116:30:120:0.967:2	0/1:1,144:30:145:0.993:2	0/1:69,58:30:127:0.457:2	0/1:54,50:30:104:0.481:2	0/1:0,122:29:123:1.00:2
chr1	111861974	rs2275254	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:54,43:33:97:0.443:2	0/1:33,22:33:55:0.400:2	./.	0/1:1,124:32:125:0.992:2	0/1:0,95:32:95:1.00:2	0/1:67,44:32:111:0.396:2	0/1:1,75:33:76:0.987:2	0/1:1,110:33:111:0.991:2	0/1:70,49:33:119:0.412:2	0/1:36,47:33:83:0.566:2	0/1:0,108:34:108:1.00:2
chr1	111862042	rs36011905	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,36:33:112:0.321:2	./.	./.
chr1	111862074	rs2820092	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,43:31:91:0.473:2	./.	./.	./.	./.	./.
chr1	111862078	rs12094378	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,25:32:61:0.410:2	./.	0/1:63,21:32:84:0.250:2	0/1:47,26:31:73:0.356:2	0/1:54,30:31:84:0.357:2
chr1	111862952	rs2256721	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,34:31:73:0.466:2	0/1:32,24:32:56:0.429:2	./.	0/1:0,101:32:101:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,106:31:106:1.00:2	0/1:1,91:32:92:0.989:2	0/1:0,122:32:122:1.00:2	0/1:45,44:33:89:0.494:2	0/1:41,23:31:64:0.359:2	0/1:0,84:32:84:1.00:2
chr1	111891192	rs2184884	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,32:31:88:0.364:2	./.	0/1:81,36:31:117:0.308:2	0/1:49,26:31:75:0.347:2	0/1:91,56:31:147:0.381:2
chr1	111893958	rs1668	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,35:33:67:0.522:2	0/1:29,33:33:62:0.532:2	./.	0/1:0,120:33:120:1.00:2	0/1:61,45:32:106:0.425:2	./.	0/1:62,44:32:106:0.415:2	./.	0/1:71,51:33:123:0.418:2	0/1:55,41:32:96:0.427:2	0/1:0,97:32:97:1.00:2
chr1	111957097	rs7825	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,15:33:33:0.455:2	0/1:13,3:33:16:0.188:2	./.	0/1:0,17:33:17:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,24:33:24:1.00:2	0/1:15,10:33:25:0.400:2	0/1:11,5:32:16:0.313:2	./.	0/1:8,7:33:15:0.467:2	./.
chr1	111957188	rs188280606	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:31:12:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	111957245	rs9629	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,48:32:80:0.600:2	0/1:34,26:31:60:0.433:2	./.	0/1:49,52:32:101:0.515:2	0/1:33,37:32:70:0.529:2	0/1:37,46:32:83:0.554:2	0/1:48,30:33:78:0.385:2	./.	./.	0/1:47,37:33:84:0.440:2	./.
chr1	111957311	rs10067	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,40:32:107:0.374:2	0/1:28,36:33:64:0.563:2	./.	./.	0/1:42,46:33:88:0.523:2	./.	./.	./.
chr1	111957517	rs3767609	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,4:33:39:0.103:2	0/1:21,10:33:31:0.323:2	./.	0/1:19,11:31:30:0.367:2	0/1:37,6:32:43:0.140:2	0/1:0,18:32:18:1.00:2	0/1:21,8:32:29:0.276:2	./.	./.	0/1:40,3:33:43:0.070:2	./.
chr1	111957525	rs61742558	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,12:31:30:0.400:2	./.	./.	./.	./.	./.
chr1	111957570	rs45455292	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:39,13:32:52:0.250:2	./.	./.	0/1:22,6:33:28:0.214:2	./.	0/1:20,10:30:30:0.333:2	0/1:16,8:31:24:0.333:2	./.	./.	0/1:30,4:32:34:0.118:2	./.
chr1	111957583	rs1126656	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,18:33:57:0.316:2	0/1:28,3:33:31:0.097:2	./.	0/1:21,9:29:30:0.300:2	0/1:14,5:34:19:0.263:2	0/1:24,15:31:39:0.385:2	0/1:16,16:32:32:0.500:2	./.	./.	0/1:28,6:31:34:0.176:2	./.
chr1	111957592	rs56294468	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,23:33:62:0.371:2	0/1:30,5:33:35:0.143:2	./.	0/1:20,11:31:31:0.355:2	0/1:16,9:31:25:0.360:2	0/1:25,19:31:44:0.432:2	0/1:20,17:32:38:0.459:2	./.	./.	0/1:28,7:32:35:0.200:2	./.
chr1	111957693	rs2485319	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,38:29:87:0.437:2	0/1:31,24:28:55:0.436:2	0/1:0,23:28:23:1.00:2	0/1:0,117:29:117:1.00:2	0/1:1,114:29:115:0.991:2	0/1:0,170:29:170:1.00:2	0/1:66,70:28:136:0.515:2	0/1:87,77:28:164:0.470:2	./.	0/1:70,57:29:127:0.449:2	./.
chr1	111957848	rs372572309	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:33:77:0.052:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	111966291	rs954739	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,41:31:109:0.376:2	0/1:36,22:31:58:0.379:2	0/1:62,38:31:100:0.380:2	0/1:63,25:31:88:0.284:2	./.	./.	0/1:49,37:31:86:0.430:2	./.
chr1	111968024	rs75085433	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,6:20:75:0.080:2	./.	./.	./.	./.	0/1:100,7:20:107:0.065:2	./.	./.	./.	0/1:88,7:20:96:0.074:2	0/1:84,7:20:91:0.077:2
chr1	111969719	rs1264894	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,12:33:13:0.923:2	0/1:0,102:32:102:1.00:2	0/1:0,108:32:108:1.00:2	0/1:1,110:32:111:0.991:2	0/1:70,46:32:116:0.397:2	0/1:68,40:32:108:0.370:2	./.	0/1:58,40:33:98:0.408:2	./.
chr1	111998734	rs151112830	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,33:32:70:0.471:2
chr1	112003608	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:31:122:0.033:2	./.	./.	./.
chr1	112018657	rs6703267	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,37:32:87:0.425:2	0/1:36,26:31:62:0.419:2	0/1:38,39:32:77:0.506:2	0/1:40,37:32:77:0.481:2	./.	./.	0/1:37,26:32:63:0.413:2	./.
chr1	112029193	rs2252739	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:27:32:1.00:2	0/1:0,24:27:24:1.00:2	0/1:0,6:28:6:1.00:2	0/1:0,47:27:47:1.00:2	0/1:0,51:27:51:1.00:2	0/1:27,14:28:41:0.341:2	0/1:0,43:28:43:1.00:2	0/1:46,18:27:64:0.281:2	0/1:0,62:29:62:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,54:27:54:1.00:2
chr1	112031432	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,7:33:199:0.035:2	./.
chr1	112033285	rs2275797	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,8:31:22:0.364:2	./.	./.	0/1:16,6:33:22:0.273:2	./.	./.	./.	./.
chr1	112042632	rs2229155	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,106:33:106:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,13:33:13:1.00:2	0/1:2,127:33:129:0.984:2	0/1:2,80:32:82:0.976:2	0/1:49,59:32:108:0.546:2	0/1:0,96:32:96:1.00:2	0/1:59,47:33:106:0.443:2	0/1:0,107:33:107:1.00:2	0/1:1,99:32:100:0.990:2	0/1:0,145:33:145:1.00:2
chr1	112042787	rs35511654	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,46:33:117:0.393:2	./.	./.	0/1:69,52:32:121:0.430:2	./.	./.	./.	./.
chr1	112269740	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,4:32:47:0.085:2	./.	./.	./.	./.	./.	./.
chr1	112269872	rs197434	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:29:23:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,49:30:49:1.00:2	0/1:1,32:31:33:0.970:2	0/1:0,27:29:27:1.00:2	0/1:0,49:30:49:1.00:2	0/1:2,41:31:43:0.953:2	0/1:0,32:32:32:1.00:2	0/1:15,20:32:35:0.571:2	0/1:0,38:30:38:1.00:2
chr1	112298378	rs28372703	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,41:33:106:0.387:2	0/1:60,48:34:108:0.444:2	0/1:37,38:34:75:0.507:2	./.
chr1	112298582	rs197392	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,9:31:21:0.429:2	./.	0/1:58,61:29:119:0.513:2	./.	0/1:63,42:29:105:0.400:2	./.	0/1:82,45:31:127:0.354:2	./.	./.
chr1	112308953	rs197412	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:26,14:33:40:0.350:2	0/1:14,5:32:19:0.263:2	0/1:2,2:34:4:0.500:2	./.	0/1:16,9:31:25:0.360:2	./.	0/1:25,12:30:37:0.324:2	0/1:16,9:33:25:0.360:2	0/1:0,29:33:29:1.00:2	0/1:24,17:31:41:0.415:2	0/1:31,22:33:54:0.415:2
chr1	112308972	rs197413	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:29,12:31:41:0.293:2	0/1:16,5:32:21:0.238:2	./.	./.	0/1:17,10:29:27:0.370:2	./.	0/1:21,11:27:32:0.344:2	0/1:21,14:30:35:0.400:2	0/1:0,34:31:34:1.00:2	0/1:28,21:30:49:0.429:2	0/1:32,19:31:51:0.373:2
chr1	112309123	rs197414	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,34:30:70:0.486:2	./.	./.	./.	./.
chr1	112309331	rs85276	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,42:32:87:0.483:2	./.	./.	./.	./.
chr1	112525085	rs17221819	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:32,42:33:74:0.568:2	0/1:36,26:32:62:0.419:2	0/1:6,4:31:10:0.400:2	./.	0/1:1,175:32:176:0.994:2	./.	./.	0/1:98,88:32:186:0.473:2	./.	./.	./.
chr1	112991698	rs2256883	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,23:32:54:0.426:2	0/1:11,11:31:22:0.500:2	./.	0/1:36,32:32:68:0.471:2	0/1:43,34:31:77:0.442:2	0/1:1,67:32:68:0.985:2	0/1:0,83:32:83:1.00:2	0/1:37,31:32:68:0.456:2	0/1:33,40:33:73:0.548:2	0/1:25,20:32:45:0.444:2	0/1:0,56:32:56:1.00:2
chr1	112999227	rs1175641	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,16:33:16:1.00:2	./.	0/1:1,27:31:28:0.964:2	0/1:0,13:32:13:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,30:32:30:1.00:2
chr1	112999339	rs12137578	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,34:30:89:0.382:2	./.	./.
chr1	113057601	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:29:108:0.037:2	./.	./.	./.	./.	./.
chr1	113063125	rs910697	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:32:8:1.00:2	0/1:43,35:31:78:0.449:2	0/1:50,49:30:99:0.495:2	./.	0/1:1,89:31:90:0.989:2	./.	0/1:1,81:32:82:0.988:2	0/1:53,24:31:77:0.312:2	./.
chr1	113068713	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	113084611	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:33:135:0.030:2	./.
chr1	113098534	rs6658555	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,24:32:57:0.421:2	./.	0/1:44,40:33:84:0.476:2	./.	./.
chr1	113143420	rs116580400	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,36:33:69:0.529:2	./.	./.	./.	./.	./.	./.	./.
chr1	113159464	rs114199731	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,49:31:141:0.348:2	./.	./.	./.
chr1	113196207	rs201469893	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,7:30:16:0.438:2	0/1:5,3:29:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	113197136	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:33:106:0.038:2	./.	./.	./.	./.	./.
chr1	113197203	rs3790599	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:32:14:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	113212751	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:32:188:0.021:2
chr1	113236681	rs3748656	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,10:30:16:0.625:2	0/1:67,51:28:118:0.432:2	0/1:56,42:28:98:0.429:2	./.	0/1:49,49:28:98:0.500:2	./.	0/1:69,57:29:126:0.452:2	0/1:55,39:29:95:0.415:2	./.
chr1	113237171	rs883593	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,21:29:48:0.438:2	0/1:39,15:27:54:0.278:2	./.	0/1:19,14:29:33:0.424:2	./.	0/1:34,22:31:56:0.393:2	0/1:22,22:29:44:0.500:2	./.
chr1	113239382	rs17030651	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,6:28:11:0.545:2	0/1:44,34:30:78:0.436:2	0/1:54,47:31:101:0.465:2	./.	0/1:48,51:31:99:0.515:2	./.	0/1:43,35:32:78:0.449:2	0/1:27,33:30:60:0.550:2	./.
chr1	113241052	rs2306940	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:32:6:0.500:2	0/1:31,20:31:51:0.392:2	0/1:28,15:30:43:0.349:2	./.	0/1:23,27:32:50:0.540:2	./.	0/1:20,18:31:38:0.474:2	0/1:16,12:31:28:0.429:2	./.
chr1	113243048	rs6679	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,8:29:16:0.500:2	0/1:55,59:30:114:0.518:2	0/1:48,63:30:111:0.568:2	./.	0/1:110,65:31:175:0.371:2	./.	0/1:76,53:32:129:0.411:2	0/1:56,49:31:105:0.467:2	./.
chr1	113255389	rs10857971	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,84:31:84:1.00:2	0/1:1,60:31:61:0.984:2	0/1:0,65:33:65:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,51:31:51:1.00:2
chr1	113255456	rs34611728	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,9:31:12:0.750:2	0/1:36,27:31:63:0.429:2	0/1:24,25:31:49:0.510:2	./.	./.	./.	./.	./.	./.
chr1	113257714	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	113264930	rs35995150	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,6:31:15:0.400:2	0/1:44,37:28:81:0.457:2	0/1:30,35:30:65:0.538:2	./.	./.	./.	./.	./.	./.
chr1	113456546	rs1049434	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:113,83:33:196:0.423:2	0/1:78,82:33:160:0.513:2	0/1:20,18:32:38:0.474:2	0/1:2,194:33:196:0.990:2	./.	./.	0/1:111,85:32:196:0.434:2	0/1:102,93:32:195:0.477:2	0/1:0,195:33:195:1.00:2	0/1:0,190:32:191:1.00:2	0/1:103,93:33:196:0.474:2
chr1	113650330	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:31:106:0.038:2	./.	./.	./.
chr1	113655206	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,6:28:122:0.049:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	113657092	rs1216793	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,26:32:26:1.00:2	0/1:0,11:31:11:1.00:2	./.	0/1:0,25:32:25:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,27:28:27:1.00:2
chr1	113657239	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:31:154:0.026:2	./.	./.	./.	./.	./.
chr1	113661973	rs143661098	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,56:29:116:0.483:2
chr1	113666676	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:31:97:0.041:2	./.	./.	./.
chr1	113666691	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.	./.	./.
chr1	114162422	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:33:166:0.024:2
chr1	114184838	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,4:29:73:0.055:2	./.	./.	./.	./.	./.	./.
chr1	114196481	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:30:60:0.067:2	./.	./.	./.
chr1	114196495	rs2359173	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:27,20:29:47:0.426:2	0/1:20,10:27:30:0.333:2	0/1:9,3:27:12:0.250:2	./.	0/1:19,23:29:42:0.548:2	./.	0/1:33,16:29:49:0.327:2	0/1:2,64:28:66:0.970:2	0/1:22,29:29:51:0.569:2	0/1:18,34:28:52:0.654:2	0/1:30,25:27:55:0.455:2
chr1	114196614	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,4:32:70:0.057:2	./.	./.	./.	./.	./.	./.
chr1	114226143	rs61742849	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,53:32:112:0.473:2	0/1:36,12:31:48:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	114249231	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr1	114301263	rs113778197	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,10:31:52:0.196:2	0/1:9,5:32:14:0.357:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	114301335	rs61817589	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:91,68:33:159:0.428:2	0/1:39,35:32:74:0.473:2	./.	./.	./.	./.	0/1:105,88:32:193:0.456:2	./.	./.	0/1:108,87:32:195:0.446:2	0/1:105,80:33:185:0.432:2
chr1	114310859	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:32:64:0.063:2	./.	./.
chr1	114354654	rs3195954	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:25:12:0.417:2	./.	0/1:0,8:30:8:1.00:2	./.	./.	./.	./.	./.
chr1	114354942	rs3789604	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,8:32:8:1.00:2	./.	./.	./.	./.	./.
chr1	114377568	rs2476601	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,157:30:157:1.00:2	0/1:0,83:30:83:1.00:2	0/1:0,21:30:21:1.00:2	0/1:2,155:30:157:0.987:2	0/1:0,103:30:103:1.00:2	0/1:0,161:30:161:1.00:2	0/1:84,61:30:147:0.421:2	0/1:0,135:30:135:1.00:2	0/1:0,155:31:155:1.00:2	0/1:1,140:30:141:0.993:2	0/1:65,81:30:146:0.555:2
chr1	114380508	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:33:82:0.049:2	./.
chr1	114397647	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:31:109:0.037:2	./.	./.	./.	./.
chr1	114424601	rs1217381	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,77:31:77:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,101:31:101:1.00:2	./.	0/1:0,60:31:60:1.00:2	0/1:0,81:31:81:1.00:2
chr1	114438951	rs1217401	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,3:31:12:0.250:2	0/1:61,42:29:103:0.408:2	0/1:49,26:30:75:0.347:2	./.	./.	./.	0/1:71,44:30:115:0.383:2	./.	./.
chr1	114443899	rs17464525	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,95:30:193:0.492:2	./.	0/1:104,81:30:186:0.438:2	./.	./.	./.	./.	./.
chr1	114448389	rs11552449	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:21,22:30:43:0.512:2	0/1:10,16:31:26:0.615:2	0/1:0,3:28:3:1.00:2	./.	./.	./.	0/1:22,18:28:40:0.450:2	./.	./.	./.	0/1:24,16:30:40:0.400:2
chr1	114449662	rs3761936	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:96,64:30:160:0.400:2	0/1:48,41:29:89:0.461:2	0/1:10,14:30:24:0.583:2	./.	./.	./.	0/1:76,87:30:163:0.534:2	0/1:175,5:31:180:0.028:2	./.	./.	0/1:84,79:29:163:0.485:2
chr1	114500823	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:34:130:0.031:2	./.	./.
chr1	114505000	rs17852555	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,70:31:72:0.972:2	./.	0/1:46,30:31:76:0.395:2	0/1:45,22:32:67:0.328:2	./.	0/1:50,41:33:91:0.451:2	./.	0/1:54,37:32:92:0.407:2
chr1	114508757	rs35061908	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,35:33:72:0.486:2	./.	./.
chr1	114515717	rs2358996	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:16,19:31:35:0.543:2	0/1:7,18:32:25:0.720:2	0/1:2,3:31:5:0.600:2	./.	./.	0/1:27,25:28:52:0.481:2	0/1:17,21:31:38:0.553:2	./.	./.	0/1:0,36:30:36:1.00:2	0/1:12,21:30:33:0.636:2
chr1	114516035	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,74:32:150:0.493:2	./.	./.	./.	./.	./.
chr1	114523624	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,5:29:164:0.030:2	./.	./.
chr1	114680310	rs41274114	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,68:31:178:0.382:2	./.	./.	./.	0/1:104,84:31:188:0.447:2	0/1:99,65:32:164:0.396:2	./.	./.
chr1	114680337	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2	./.	./.	./.	./.
chr1	114680540	rs17032441	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,91:32:191:0.476:2	./.	./.	0/1:109,84:32:193:0.435:2	./.	0/1:88,100:33:188:0.532:2	0/1:107,79:32:186:0.425:2	./.
chr1	114948281	rs6537825	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,166:32:167:0.994:2	0/1:0,118:32:118:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,178:33:178:1.00:2	0/1:102,93:32:195:0.477:2	0/1:0,192:32:192:1.00:2	0/1:1,180:32:181:0.994:2	0/1:83,106:32:189:0.561:2	0/1:0,187:34:187:1.00:2	0/1:0,178:32:178:1.00:2	0/1:0,176:32:176:1.00:2
chr1	114963084	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,8:17:60:0.133:2	./.	./.	./.	./.	./.
chr1	114973429	rs12083584	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:49,32:32:81:0.395:2	0/1:16,23:32:39:0.590:2	./.	0/1:44,30:33:74:0.405:2	./.	./.	0/1:23,13:32:36:0.361:2	0/1:38,28:33:66:0.424:2	./.	0/1:39,22:33:61:0.361:2	./.
chr1	115119392	rs41274118	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:32:7:0.571:2	./.	0/1:15,7:32:22:0.318:2	0/1:8,12:31:20:0.600:2	./.	0/1:20,7:33:27:0.259:2	0/1:20,25:33:45:0.556:2	./.	./.
chr1	115130353	rs61000990	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,23:32:41:0.561:2
chr1	115164554	rs56861557	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,40:31:82:0.488:2
chr1	115168097	rs12136548	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,39:33:76:0.513:2	./.	./.	./.	./.	0/1:40,32:32:72:0.444:2	./.	0/1:59,64:32:123:0.520:2
chr1	115168190	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:32:137:0.029:2	./.	./.
chr1	115168600	rs7541738	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:32:38:1.00:2	0/1:0,21:32:21:1.00:2	0/1:2,4:33:6:0.667:2	0/1:26,19:31:45:0.422:2	0/1:20,13:31:33:0.394:2	0/1:11,14:31:25:0.560:2	0/1:2,37:31:40:0.949:2	0/1:20,13:31:33:0.394:2	./.	0/1:0,20:33:20:1.00:2	./.
chr1	115216290	rs370342388	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:33:64:0.063:2
chr1	115217455	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:125,4:31:129:0.031:2	./.	./.	./.	./.	./.	./.
chr1	115231254	rs61752479	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,8:32:16:0.500:2	0/1:84,67:33:151:0.444:2	./.	0/1:73,76:32:149:0.510:2	./.	0/1:99,86:32:185:0.465:2	0/1:79,92:34:171:0.538:2	./.	./.
chr1	115236057	rs17602729	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,10:32:22:0.455:2	0/1:121,72:31:193:0.373:2	./.	0/1:98,69:31:167:0.413:2	./.	0/1:88,74:32:162:0.457:2	0/1:115,76:33:191:0.398:2	./.	./.
chr1	115260778	rs183844328	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,32:33:61:0.525:2	./.	./.	./.	./.	./.	./.
chr1	115282484	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,8:27:28:0.286:2	./.	./.	./.	./.	./.	./.
chr1	115488970	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,5:30:200:0.025:2	./.
chr1	115576023	rs10776792	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,163:33:163:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,191:33:191:1.00:2	./.	0/1:0,194:32:194:1.00:2	0/1:0,188:33:188:1.00:2	0/1:0,192:33:192:1.00:2	0/1:0,180:34:180:1.00:2	0/1:0,178:33:178:1.00:2	0/1:0,188:33:188:1.00:2
chr1	115604798	rs10776795	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:30:5:0.600:2	0/1:54,67:30:121:0.554:2	0/1:72,55:29:127:0.433:2	0/1:0,96:30:96:1.00:2	0/1:64,73:31:137:0.533:2	0/1:2,122:30:124:0.984:2	0/1:0,89:31:89:1.00:2	./.	./.
chr1	115829313	rs6330	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,40:30:76:0.526:2	0/1:21,22:31:43:0.512:2	./.	0/1:0,92:30:92:1.00:2	0/1:60,45:30:107:0.429:2	0/1:43,59:30:102:0.578:2	0/1:3,127:31:130:0.977:2	0/1:57,70:30:127:0.551:2	./.	0/1:52,39:29:91:0.429:2	./.
chr1	116206423	rs4839469	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:78,55:30:136:0.414:2	0/1:49,42:31:92:0.462:2	./.	./.	0/1:65,88:30:154:0.575:2	./.	./.	./.	./.	./.	0/1:3,147:31:151:0.980:2
chr1	116226631	rs74117015	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,10:17:164:0.061:2	./.	./.	./.	./.
chr1	116243877	rs7413162	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:100,81:32:181:0.448:2	0/1:80,74:32:154:0.481:2	0/1:1,31:31:32:0.969:2	./.	0/1:91,79:31:171:0.465:2	./.	0/1:2,179:32:181:0.989:2	0/1:100,75:32:175:0.429:2	0/1:1,154:32:155:0.994:2	./.	0/1:87,68:33:155:0.439:2
chr1	116260532	rs2997741	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:31:3:1.00:2	0/1:0,41:31:41:1.00:2	0/1:23,17:31:40:0.425:2	0/1:40,21:31:61:0.344:2	0/1:0,28:32:28:1.00:2	0/1:34,21:32:55:0.382:2	0/1:0,60:33:60:1.00:2	0/1:27,11:31:38:0.289:2	0/1:0,48:32:48:1.00:2
chr1	116310967	rs4074536	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,12:29:28:0.429:2	0/1:0,146:30:146:1.00:2	./.	0/1:77,65:29:142:0.458:2	0/1:100,82:30:182:0.451:2	./.	0/1:79,74:31:153:0.484:2	0/1:77,69:29:146:0.473:2	0/1:102,81:28:183:0.443:2
chr1	116381612	rs141298401	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,8:31:20:0.400:2	./.
chr1	116381886	rs41267509	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,18:30:35:0.514:2	./.	./.	./.	./.	./.	./.	./.
chr1	116382159	rs117907646	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,10:32:28:0.357:2	./.	./.	./.	./.	./.	./.
chr1	116382318	rs883555	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	0/1:0,6:29:6:1.00:2	0/1:0,5:28:5:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,4:29:4:1.00:2	0/1:0,2:28:2:1.00:2	./.
chr1	116382511	rs2797191	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:32:17:1.00:2	0/1:0,6:32:6:1.00:2	./.	0/1:0,12:32:12:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,24:32:24:1.00:2
chr1	116382778	rs2811568	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,27:32:27:1.00:2	0/1:0,9:33:9:1.00:2	./.	0/1:0,21:32:21:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,18:33:18:1.00:2	0/1:1,18:33:19:0.947:2	0/1:0,22:32:22:1.00:2
chr1	116383281	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,5:30:63:0.079:2	0/1:47,6:24:53:0.113:2	./.	./.	./.	./.	./.	./.
chr1	116383283	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,5:24:64:0.078:2	0/1:45,6:22:51:0.118:2	./.	./.	./.	./.	./.	./.
chr1	116383300	rs2811569	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:32:45:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,22:30:23:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,55:33:55:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,54:33:54:1.00:2
chr1	116383333	rs4839047	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:24:9:0.333:2	./.	./.	./.	0/1:4,11:31:15:0.733:2	0/1:20,17:30:37:0.459:2	0/1:0,40:31:40:1.00:2	0/1:18,22:29:40:0.550:2	./.
chr1	116383719	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:32:86:0.047:2	./.	./.	./.
chr1	116384090	rs1418664	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:31:7:1.00:2	0/1:0,38:31:38:1.00:2	0/1:18,9:32:27:0.333:2	0/1:0,27:31:27:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,43:32:43:1.00:2	0/1:29,27:32:56:0.482:2
chr1	116384514	rs143983859	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,54:30:144:0.375:2	./.	./.	./.
chr1	116384580	rs2797208	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,3:31:14:0.214:2	0/1:53,83:31:136:0.610:2	./.	./.	0/1:86,69:32:155:0.445:2	0/1:83,59:31:142:0.415:2	0/1:1,123:32:124:0.992:2	0/1:60,55:31:115:0.478:2	./.
chr1	116384773	rs12403667	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,22:28:52:0.423:2	0/1:24,16:28:40:0.400:2	0/1:0,58:28:58:1.00:2	0/1:17,29:29:46:0.630:2	0/1:23,19:28:42:0.452:2	./.	0/1:23,18:27:41:0.439:2	0/1:28,35:28:63:0.556:2
chr1	116385122	rs2811570	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,5:29:14:0.357:2	0/1:46,43:29:89:0.483:2	./.	./.	0/1:35,24:28:59:0.407:2	0/1:57,72:28:129:0.558:2	0/1:0,87:29:87:1.00:2	0/1:50,42:29:92:0.457:2	./.
chr1	116385171	rs10923606	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:27:10:0.500:2	0/1:40,47:28:87:0.540:2	0/1:44,30:28:74:0.405:2	0/1:0,102:28:103:1.00:2	0/1:28,27:30:55:0.491:2	0/1:74,33:29:107:0.308:2	./.	0/1:41,35:29:76:0.461:2	0/1:52,63:29:115:0.548:2
chr1	116385288	rs2811571	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,28:30:65:0.431:2	./.	./.	0/1:25,28:30:53:0.528:2	0/1:21,18:29:39:0.462:2	0/1:2,61:30:63:0.968:2	0/1:29,19:30:48:0.396:2	./.
chr1	116385309	rs10923609	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:31:5:0.800:2	0/1:32,37:30:69:0.536:2	0/1:18,21:30:39:0.538:2	0/1:0,53:30:53:1.00:2	0/1:37,26:29:63:0.413:2	0/1:30,28:30:58:0.483:2	./.	0/1:26,29:31:55:0.527:2	0/1:36,31:31:67:0.463:2
chr1	116385467	rs2811572	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,9:30:30:0.300:2	0/1:105,82:30:187:0.439:2	./.	./.	0/1:117,69:29:186:0.371:2	0/1:99,88:30:187:0.471:2	0/1:0,178:31:178:1.00:2	0/1:79,84:30:163:0.515:2	./.
chr1	116385817	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:179,4:33:183:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr1	116386011	rs7556479	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,21:28:53:0.396:2	./.	./.	./.	./.	./.	./.
chr1	116386105	rs7556581	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,7:31:21:0.333:2	0/1:9,5:30:14:0.357:2	0/1:0,15:32:15:1.00:2	0/1:5,18:32:23:0.783:2	./.
chr1	116386139	rs2811573	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:31:17:1.00:2	0/1:0,12:32:12:1.00:2	./.	0/1:0,15:30:15:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,28:31:28:1.00:2
chr1	116386243	rs7520643	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:28:12:0.583:2	./.	./.	./.	0/1:11,16:31:27:0.593:2	0/1:19,9:30:28:0.321:2	0/1:0,47:31:47:1.00:2	0/1:27,26:32:53:0.491:2	./.
chr1	116386244	rs61801670	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,5:32:12:0.417:2	0/1:26,28:32:54:0.519:2	0/1:8,16:32:24:0.667:2	0/1:0,56:32:56:1.00:2	0/1:18,11:33:29:0.379:2	0/1:9,19:33:28:0.679:2	./.	0/1:28,27:32:55:0.491:2	0/1:38,37:32:75:0.493:2
chr1	116534852	rs4046190	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,90:30:92:0.978:2	0/1:0,46:31:46:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,76:29:76:1.00:2	0/1:2,105:30:107:0.981:2	0/1:57,42:29:99:0.424:2	0/1:70,59:30:129:0.457:2	0/1:4,95:30:99:0.960:2	./.	0/1:0,73:29:73:1.00:2	0/1:0,75:29:75:1.00:2
chr1	116569530	rs2488429	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,133:32:134:1.00:2	0/1:1,90:33:91:0.989:2	0/1:0,17:33:17:1.00:2	0/1:2,158:33:160:0.988:2	0/1:0,121:32:121:1.00:2	0/1:0,175:32:175:1.00:2	0/1:0,152:32:152:1.00:2	0/1:4,181:33:185:0.978:2	0/1:0,159:33:159:1.00:2	0/1:1,166:33:167:0.994:2	0/1:0,155:32:155:1.00:2
chr1	116605448	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:34:192:0.021:2	./.
chr1	116916105	rs191795671	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,52:30:89:0.584:2	./.	./.	./.	./.
chr1	116926643	rs146195513	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:32:180:0.022:2	./.	./.	./.	./.	./.
chr1	116932921	rs11540956	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,58:31:122:0.475:2	0/1:43,43:32:86:0.500:2	./.	./.	./.	./.
chr1	116947084	rs1802716	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,44:31:85:0.518:2	./.	./.	./.	./.	./.
chr1	116948712	rs850610	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,25:33:42:0.595:2	0/1:11,16:32:27:0.593:2	0/1:8,3:32:11:0.273:2	0/1:2,52:32:54:0.963:2	./.	0/1:30,22:32:52:0.423:2	0/1:31,34:32:65:0.523:2	0/1:4,56:32:60:0.933:2	0/1:26,24:33:50:0.480:2	0/1:21,18:30:39:0.462:2	0/1:0,56:32:56:1.00:2
chr1	116952787	rs1885802	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,37:30:97:0.381:2	0/1:58,39:29:97:0.402:2	./.	./.	./.	./.
chr1	117078698	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,30:32:64:0.469:2	./.
chr1	117122130	rs6703791	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,52:29:111:0.468:2	0/1:61,44:29:105:0.419:2	0/1:56,58:29:114:0.509:2	./.	0/1:22,26:27:48:0.542:2	./.
chr1	117122285	rs114915440	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,36:31:78:0.462:2	./.	./.	./.	./.	./.	./.
chr1	117122288	rs56982445	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:33:5:0.600:2	0/1:35,22:31:57:0.386:2	0/1:41,38:31:79:0.481:2	./.	0/1:34,33:32:68:0.493:2	./.	./.	./.	./.
chr1	117131352	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:169,17:28:186:0.091:2	./.	./.	./.	./.	./.	./.
chr1	117131400	rs4081622	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:125,22:28:148:0.150:2	0/1:89,21:28:110:0.191:2	0/1:125,22:29:147:0.150:2	0/1:100,21:28:121:0.174:2	0/1:125,9:28:134:0.067:2	0/1:114,23:28:139:0.168:2	0/1:109,22:28:132:0.168:2	0/1:99,10:28:109:0.092:2
chr1	117142588	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,28:29:63:0.444:2	./.	./.	./.	./.	./.	./.	./.
chr1	117142613	rs76151115	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,22:32:128:0.172:2	0/1:183,7:28:190:0.037:2	./.	./.	./.	./.
chr1	117142641	rs76417519	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,21:30:156:0.135:2	0/1:189,8:26:197:0.041:2	./.	./.	./.	./.
chr1	117142707	rs201515387	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,10:30:134:0.075:2	./.	./.	./.	./.	./.
chr1	117142736	rs138851517	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,20:30:58:0.345:2	./.	0/1:105,4:31:110:0.037:2	./.	./.	./.	./.	./.
chr1	117150617	rs61786588	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:96,8:29:104:0.077:2	0/1:53,5:31:58:0.086:2	./.	0/1:92,14:32:106:0.132:2	0/1:49,4:30:53:0.075:2	0/1:68,8:30:76:0.105:2	0/1:56,9:32:65:0.138:2	0/1:83,4:29:87:0.046:2	./.	./.	0/1:84,6:32:90:0.067:2
chr1	117150628	rs79475403	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:27:57:0.070:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	117158909	rs201676764	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,9:32:100:0.090:2
chr1	117158924	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,6:25:79:0.076:2
chr1	117158932	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,4:31:84:0.048:2	./.	./.	./.	./.	./.	./.	./.
chr1	117159047	rs200016035	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,3:30:24:0.125:2	./.	./.	0/1:49,9:29:58:0.155:2	./.	./.	./.	./.	0/1:50,5:27:55:0.091:2	./.
chr1	117236736	rs2275281	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.	./.	./.	./.
chr1	117311147	rs699738	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,25:32:55:0.455:2	0/1:13,12:32:25:0.480:2	./.	./.	./.	./.	./.	./.	0/1:32,28:33:60:0.467:2	0/1:31,23:31:54:0.426:2	./.
chr1	117487323	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,3:31:33:0.091:2	./.	./.	./.	./.	./.
chr1	117487710	rs10159095	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,7:33:13:0.538:2	0/1:3,4:32:7:0.571:2	0/1:1,3:33:4:0.750:2	0/1:0,11:32:11:1.00:2	0/1:1,25:30:26:0.962:2	0/1:1,26:30:27:0.963:2	0/1:11,17:31:28:0.607:2	0/1:1,20:31:21:0.952:2	0/1:0,27:32:28:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,25:31:25:1.00:2
chr1	117487711	rs4546904	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,7:32:13:0.538:2	0/1:3,4:31:7:0.571:2	0/1:1,3:31:4:0.750:2	0/1:0,11:31:11:1.00:2	0/1:1,25:30:26:0.962:2	0/1:1,26:30:27:0.963:2	0/1:12,17:31:29:0.586:2	0/1:1,20:30:21:0.952:2	0/1:0,28:30:28:1.00:2	0/1:0,11:28:11:1.00:2	0/1:0,25:30:25:1.00:2
chr1	117503940	rs34625170	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,42:33:108:0.389:2	0/1:16,25:32:41:0.610:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	117529458	rs10801922	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,30:30:66:0.455:2	0/1:8,14:32:22:0.636:2	0/1:7,6:31:13:0.462:2	0/1:46,30:30:76:0.395:2	./.	0/1:43,45:31:88:0.511:2	./.	0/1:0,86:31:86:1.00:2	./.	./.	0/1:41,27:31:68:0.397:2
chr1	117552560	rs7554376	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,47:30:90:0.522:2	0/1:25,35:29:60:0.583:2	./.
chr1	117554352	rs41276560	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,26:32:38:0.684:2	./.	./.	./.	./.
chr1	117554421	rs3754112	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,75:32:75:1.00:2	0/1:36,36:32:72:0.500:2	0/1:53,20:32:73:0.274:2	./.	0/1:67,39:33:106:0.368:2	0/1:33,28:33:61:0.459:2	0/1:45,42:32:87:0.483:2
chr1	117556307	rs141390223	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,28:31:74:0.378:2	./.	./.	./.	./.	./.	./.
chr1	117559726	rs2249265	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:28:71:1.00:2	0/1:0,33:27:33:1.00:2	0/1:4,3:28:7:0.429:2	0/1:0,74:27:74:1.00:2	0/1:1,96:27:97:0.990:2	0/1:0,81:27:81:1.00:2	0/1:49,63:27:112:0.563:2	0/1:1,87:27:88:0.989:2	0/1:0,82:28:82:1.00:2	0/1:0,65:28:65:1.00:2	0/1:0,71:27:71:1.00:2
chr1	117560058	rs17235773	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,49:33:104:0.471:2	0/1:32,24:32:56:0.429:2	./.
chr1	117560818	rs3736908	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:47,26:32:73:0.356:2	0/1:34,25:32:59:0.424:2	0/1:6,10:33:16:0.625:2	./.	./.	0/1:60,43:31:103:0.417:2	./.	0/1:61,56:33:117:0.479:2	./.	./.	./.
chr1	117560929	rs3736907	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,12:27:19:0.632:2	./.	./.	0/1:74,54:30:128:0.422:2	./.	0/1:74,72:30:146:0.493:2	./.	./.	./.
chr1	117576522	rs34223095	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:22,27:31:49:0.551:2	0/1:13,17:31:30:0.567:2	0/1:2,4:31:6:0.667:2	./.	./.	./.	0/1:52,23:31:75:0.307:2	./.	./.	./.	./.
chr1	117602960	rs2244501	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:29:53:1.00:2	0/1:3,24:31:28:0.889:2	0/1:0,7:29:7:1.00:2	0/1:0,70:30:70:1.00:2	0/1:0,42:30:42:1.00:2	0/1:0,78:29:78:1.00:2	0/1:0,49:29:49:1.00:2	0/1:0,58:30:58:1.00:2	0/1:45,38:30:83:0.458:2	0/1:0,64:29:64:1.00:2	0/1:43,36:28:79:0.456:2
chr1	117617705	rs998532	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:32:62:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,5:33:5:1.00:2	0/1:27,27:32:54:0.500:2	./.	0/1:0,66:32:66:1.00:2	0/1:2,55:33:57:0.965:2	0/1:30,30:32:60:0.500:2	0/1:21,27:33:48:0.563:2	0/1:23,31:32:54:0.574:2	0/1:27,33:31:60:0.550:2
chr1	117618067	rs1289673	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:32:36:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,4:29:4:1.00:2	0/1:38,34:31:72:0.472:2	./.	0/1:0,72:30:72:1.00:2	0/1:0,62:31:62:1.00:2	0/1:48,28:32:76:0.368:2	0/1:36,26:32:62:0.419:2	0/1:25,30:31:55:0.545:2	0/1:59,36:31:95:0.379:2
chr1	117634037	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:31:40:0.100:2	./.	./.	./.	./.	./.
chr1	117634476	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,4:33:73:0.055:2	./.	./.	./.	./.	./.	./.
chr1	117635401	rs41306197	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,69:31:128:0.539:2	./.	./.	./.	./.	./.
chr1	117635487	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,4:29:106:0.038:2	./.	./.	./.	./.	./.	./.
chr1	117637302	rs371128981	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	117656088	rs1289658	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:48,33:29:81:0.407:2	0/1:22,22:30:44:0.500:2	0/1:6,9:30:15:0.600:2	./.	0/1:0,122:29:122:1.00:2	0/1:46,48:29:94:0.511:2	0/1:99,57:29:156:0.365:2	./.	0/1:86,40:31:126:0.317:2	0/1:53,47:30:100:0.470:2	0/1:46,45:29:91:0.495:2
chr1	117660754	rs749902	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:70,55:30:125:0.440:2	0/1:49,49:31:98:0.500:2	0/1:17,13:30:30:0.433:2	./.	0/1:2,98:30:100:0.980:2	./.	0/1:68,61:30:129:0.473:2	./.	0/1:86,85:31:172:0.497:2	./.	0/1:86,82:30:168:0.488:2
chr1	117660863	rs146244405	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,54:32:123:0.439:2	./.	./.	./.	./.	./.
chr1	117661251	rs146898739	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,56:32:138:0.406:2	./.	./.	./.	./.	./.
chr1	117664500	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:29:38:0.105:2	./.	./.
chr1	117699223	rs115884997	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,9:31:24:0.375:2	./.	./.	./.	./.	./.
chr1	117715817	rs77457286	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,7:31:18:0.389:2	./.
chr1	118003112	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,4:32:96:0.042:2	./.	./.	./.	./.	./.	./.	./.
chr1	118039473	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,4:31:56:0.071:2	./.	./.	./.	./.	./.	./.	./.
chr1	118065841	rs1290558	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:50,48:33:98:0.490:2	0/1:13,33:33:46:0.717:2	./.	./.	0/1:53,35:32:88:0.398:2	0/1:67,53:31:120:0.442:2	0/1:0,94:33:94:1.00:2	./.	./.	0/1:52,38:32:90:0.422:2	./.
chr1	118065919	rs12120771	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,20:31:58:0.345:2	./.	./.	./.	./.	0/1:25,24:31:49:0.490:2
chr1	118165577	rs865443	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,82:32:166:0.494:2	./.	./.	./.	./.	./.	./.
chr1	118165691	rs1630312	C	T,G	.	PASS	AC=3,2;AF=0.200,0.133;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant9	GT:BQ:DP:FA:SS	./.	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0/1:29:29:0.552:2	0/1:31:172:0.471:2	0/2:32:195:0.441:2	./.	./.	0/2:32:188:0.022:2	0/1:32:155:0.493:2	./.	./.
chr1	118165973	rs1627787	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,156:31:158:0.987:2	0/1:0,74:32:74:1.00:2	./.	0/1:90,94:31:184:0.511:2	0/1:109,85:31:194:0.438:2	./.	0/1:97,74:32:171:0.433:2	./.	./.	./.	0/1:101,91:31:192:0.474:2
chr1	118166096	rs2884587	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:2,103:31:105:0.981:2	0/1:0,93:32:93:1.00:2	./.	0/1:97,68:31:165:0.412:2	./.	./.	0/1:97,57:31:154:0.370:2	./.	./.	./.	0/1:93,83:31:176:0.472:2
chr1	118166750	rs2066411	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,47:30:47:1.00:2	0/1:0,18:29:18:1.00:2	./.	0/1:33,23:31:56:0.411:2	0/1:24,15:30:39:0.385:2	./.	0/1:25,20:30:45:0.444:2	./.	./.	./.	0/1:22,19:30:41:0.463:2
chr1	118166853	rs58044580	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,14:30:26:0.538:2	./.	./.	./.	./.
chr1	118166877	rs10923360	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,8:28:17:0.471:2	./.	./.	0/1:19,17:29:36:0.472:2	./.	0/1:14,12:30:26:0.462:2	./.	./.
chr1	118167199	rs826403	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,8:32:22:0.364:2	0/1:81,63:33:145:0.438:2	./.	./.	0/1:55,51:32:106:0.481:2	./.	0/1:78,86:33:164:0.524:2	./.	./.
chr1	118167653	rs866111	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,41:31:92:0.446:2	./.	0/1:60,55:32:115:0.478:2	./.	./.	./.	./.
chr1	118168234	rs11580608	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:32:4:0.750:2	0/1:15,13:31:28:0.464:2	./.	./.	./.	./.	0/1:28,12:31:40:0.300:2	./.	./.
chr1	118168826	rs11581122	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,119:32:120:0.992:2	0/1:2,61:32:63:0.968:2	./.	0/1:50,58:31:108:0.537:2	./.	./.	0/1:42,38:31:80:0.475:2	./.	./.	./.	0/1:71,46:32:117:0.393:2
chr1	118169011	rs138158904	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,43:30:135:0.319:2	./.	./.	./.	./.	./.	./.	./.
chr1	118169463	rs2282456	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:32:10:0.500:2	0/1:17,13:32:30:0.433:2	./.	./.	./.	./.	0/1:29,20:33:49:0.408:2	./.	./.
chr1	118449215	rs41276596	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:33:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	118482104	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,3:33:51:0.059:2	./.	./.	./.	./.	./.	./.	./.
chr1	118482149	rs34973445	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:59,27:32:86:0.314:2	0/1:22,21:31:43:0.488:2	./.	./.	./.	./.	./.	./.	./.	0/1:28,38:31:66:0.576:2	./.
chr1	118483474	rs3738420	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,35:29:61:0.574:2	0/1:24,15:30:39:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	118491102	rs34411361	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,30:32:74:0.405:2	0/1:26,18:32:44:0.409:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	118495153	rs2295630	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,11:30:23:0.478:2	0/1:9,5:32:14:0.357:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	118501627	rs368052262	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:32:86:0.047:2	./.
chr1	118501941	.	T	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,9:12:23:0.391:2	0/1:16,5:22:21:0.238:2	0/1:21,7:16:28:0.250:2	0/1:18,10:17:28:0.357:2	./.	0/1:14,6:20:20:0.300:2	0/1:28,8:20:36:0.222:2
chr1	118506441	rs112012491	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,25:31:52:0.481:2	./.	./.	./.	./.	./.	./.	./.
chr1	118509278	rs3738422	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,45:32:111:0.405:2	0/1:34,29:32:63:0.460:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	118509284	rs61729969	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,43:32:113:0.381:2	0/1:34,29:32:63:0.460:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	118509327	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:160,4:32:164:0.024:2	./.	./.	./.	./.	./.	./.
chr1	118516082	rs61729968	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,66:33:136:0.485:2	0/1:66,46:32:112:0.411:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	118535211	rs35290515	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,25:28:58:0.431:2	./.	./.	0/1:52,35:29:87:0.402:2	./.	./.	./.
chr1	118565953	rs10923472	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,61:31:61:1.00:2	./.	0/1:29,24:32:53:0.453:2	./.	0/1:24,25:31:49:0.510:2	0/1:45,36:32:81:0.444:2	0/1:1,48:31:49:0.980:2	./.
chr1	118583408	rs10923477	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,124:31:125:0.992:2	./.	0/1:64,54:31:118:0.458:2	./.	0/1:69,65:31:134:0.485:2	0/1:79,60:33:139:0.432:2	0/1:1,115:32:116:0.991:2	./.
chr1	118644430	rs10754367	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,175:30:179:0.978:2	./.	0/1:1,178:29:179:0.994:2	0/1:91,84:30:175:0.480:2	0/1:113,82:30:195:0.421:2	0/1:99,87:30:186:0.468:2	0/1:0,187:30:188:1.00:2	./.
chr1	118644524	rs17185492	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,45:30:92:0.489:2	./.	./.	./.	0/1:48,51:30:99:0.515:2	./.	0/1:0,88:31:88:1.00:2	./.
chr1	118693217	rs1935992	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:49,55:29:104:0.529:2	0/1:26,28:30:54:0.519:2	0/1:5,11:29:16:0.688:2	./.	0/1:2,62:29:64:0.969:2	./.	./.	0/1:39,41:29:80:0.513:2	0/1:68,58:30:126:0.460:2	./.	./.
chr1	118727746	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,24:32:143:0.168:2	./.	./.
chr1	119427454	rs12569041	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,11:30:18:0.611:2	./.	./.	./.	0/1:102,87:32:189:0.460:2	./.	0/1:83,81:32:164:0.494:2	./.	./.
chr1	119427467	rs61730011	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,6:32:22:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	119469188	rs10494217	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,49:32:107:0.458:2	./.	0/1:54,42:33:96:0.438:2	./.	./.
chr1	119474389	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2	./.	./.	./.
chr1	119575563	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,103:32:189:0.545:2
chr1	119575818	rs3790549	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,31:33:52:0.596:2	./.	./.	./.	./.	./.
chr1	119584949	rs33960696	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:54,51:31:105:0.486:2	0/1:35,11:31:46:0.239:2	./.	0/1:71,73:32:144:0.507:2	./.	0/1:92,54:31:146:0.370:2	./.	./.	0/1:76,76:32:152:0.500:2	./.	./.
chr1	119923724	rs2275607	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,7:31:13:0.538:2	0/1:66,54:32:120:0.450:2	0/1:2,63:32:65:0.969:2	0/1:1,100:32:101:0.990:2	0/1:81,35:32:116:0.302:2	./.	0/1:0,96:34:96:1.00:2	0/1:47,40:32:87:0.460:2	0/1:68,44:33:112:0.393:2
chr1	119929395	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.	./.	./.	./.	./.
chr1	120056792	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:31:100:0.040:2
chr1	120057158	rs6203	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,7:31:24:0.292:2	0/1:85,51:31:136:0.375:2	./.	0/1:1,88:31:89:0.989:2	0/1:92,54:30:146:0.370:2	0/1:102,76:30:178:0.427:2	./.	0/1:62,68:31:132:0.523:2	./.
chr1	120057205	rs141383681	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,5:30:168:0.030:2
chr1	120057246	rs1047303	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,14:31:14:1.00:2	0/1:64,35:31:99:0.354:2	0/1:2,75:30:77:0.974:2	0/1:1,76:30:77:0.987:2	0/1:66,26:30:92:0.283:2	0/1:60,47:31:108:0.439:2	./.	0/1:65,56:31:121:0.463:2	./.
chr1	120165826	rs12076924	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	0/1:0,6:31:6:1.00:2	0/1:0,3:35:3:1.00:2	./.	./.
chr1	120165853	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.
chr1	120166648	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:150,4:33:154:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr1	120166681	rs12067843	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,7:29:15:0.467:2	0/1:3,132:33:135:0.978:2	./.	0/1:85,54:32:139:0.388:2	./.	0/1:0,180:32:180:1.00:2	0/1:0,150:33:150:1.00:2	./.	0/1:76,59:33:135:0.437:2
chr1	120285546	rs543703	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,99:31:100:0.990:2	0/1:0,70:30:70:1.00:2	0/1:0,15:30:15:1.00:2	./.	0/1:106,83:30:190:0.439:2	0/1:97,82:31:179:0.458:2	0/1:4,161:31:166:0.976:2	0/1:2,180:31:183:0.989:2	0/1:97,78:31:176:0.446:2	0/1:1,104:31:105:0.990:2	0/1:0,137:31:138:1.00:2
chr1	120336785	rs1052972	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,72:31:72:1.00:2	0/1:2,63:32:65:0.969:2	./.	0/1:102,72:31:174:0.414:2	0/1:71,39:31:110:0.355:2	0/1:74,78:31:152:0.513:2	0/1:66,67:31:133:0.504:2	0/1:1,143:31:144:0.993:2	0/1:84,68:32:153:0.447:2	0/1:84,52:31:136:0.382:2	0/1:82,66:31:148:0.446:2
chr1	120345596	rs12739869	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,22:32:44:0.500:2	./.	./.	./.	./.
chr1	120377476	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:33:157:0.025:2	./.	0/1:133,4:33:137:0.029:2	./.	./.	./.
chr1	120377490	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:31:140:0.029:2	./.	0/1:108,4:32:112:0.036:2	./.	./.	./.
chr1	120378678	rs3009182	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,85:33:86:0.988:2	0/1:0,55:32:55:1.00:2	0/1:0,16:32:16:1.00:2	0/1:3,121:33:124:0.976:2	0/1:65,58:32:123:0.472:2	0/1:1,118:32:119:0.992:2	0/1:0,106:32:106:1.00:2	0/1:4,108:32:112:0.964:2	0/1:0,122:33:122:1.00:2	0/1:53,47:33:100:0.470:2	0/1:0,103:32:103:1.00:2
chr1	120379954	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,5:30:69:0.072:2	0/1:130,15:31:145:0.103:2	0/1:65,10:34:75:0.133:2	0/1:90,7:32:97:0.072:2	./.	0/1:130,8:31:138:0.058:2	./.
chr1	120379960	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,5:32:69:0.072:2	0/1:129,13:33:142:0.092:2	./.	0/1:94,7:33:102:0.069:2	./.	0/1:125,8:33:133:0.060:2	./.
chr1	120381846	rs61789693	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,17:32:31:0.548:2	./.	./.	./.	./.	./.	0/1:105,78:34:183:0.426:2	./.	./.
chr1	120381920	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:33:184:0.022:2	./.
chr1	120381953	rs184108208	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:74,3:34:77:0.039:2	./.	./.	./.	./.	./.	./.
chr1	120384205	rs2994820	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,71:32:72:0.986:2	0/1:0,43:32:43:1.00:2	0/1:0,3:32:3:1.00:2	0/1:6,64:32:70:0.914:2	0/1:19,21:32:40:0.525:2	0/1:4,61:31:65:0.938:2	0/1:0,36:32:36:1.00:2	0/1:2,72:32:74:0.973:2	0/1:2,88:33:90:0.978:2	0/1:57,41:33:98:0.418:2	0/1:0,63:33:63:1.00:2
chr1	120387000	rs200602121	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:31:76:0.053:2	./.	./.	./.
chr1	120387120	rs12405228	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,15:33:41:0.366:2	0/1:9,14:33:23:0.609:2	0/1:0,4:33:4:1.00:2	0/1:32,14:32:46:0.304:2	./.	0/1:18,15:32:33:0.455:2	0/1:17,16:30:33:0.485:2	0/1:16,20:32:36:0.556:2	0/1:10,15:34:25:0.600:2	0/1:22,12:32:34:0.353:2	0/1:29,18:32:47:0.383:2
chr1	120436751	rs35273427	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:61,75:33:136:0.551:2	0/1:46,51:33:97:0.526:2	./.	./.	./.	./.	0/1:37,28:33:65:0.431:2	0/1:49,55:32:104:0.529:2	./.	./.	0/1:84,92:33:176:0.523:2
chr1	120437718	rs2793823	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:32,25:32:57:0.439:2	0/1:10,12:30:22:0.545:2	./.	./.	0/1:34,39:31:73:0.534:2	0/1:37,32:30:69:0.464:2	0/1:35,30:31:65:0.462:2	0/1:38,36:31:74:0.486:2	./.	./.	0/1:30,45:31:75:0.600:2
chr1	120437884	rs2641348	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:66,47:33:113:0.416:2	0/1:68,46:32:114:0.404:2	./.	./.	0/1:87,105:33:192:0.547:2	0/1:79,91:32:170:0.535:2	0/1:100,100:33:200:0.500:2	0/1:107,90:32:197:0.457:2	./.	./.	0/1:73,88:33:161:0.547:2
chr1	120438827	rs41276636	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,16:25:37:0.432:2	./.	0/1:14,23:28:37:0.622:2	./.	./.	0/1:38,28:29:66:0.424:2	./.
chr1	120439109	rs6668119	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,3:26:4:0.750:2	./.	./.	0/1:1,3:27:4:0.750:2	./.	./.	./.
chr1	120458004	rs6685892	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:44,31:33:75:0.413:2	0/1:24,24:32:48:0.500:2	./.	./.	0/1:75,48:31:123:0.390:2	0/1:56,39:31:95:0.411:2	0/1:70,39:31:110:0.358:2	0/1:61,50:32:111:0.450:2	./.	./.	0/1:37,38:33:75:0.507:2
chr1	120458122	rs35586704	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,53:32:115:0.461:2
chr1	120465269	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,29:29:50:0.580:2	./.	./.	./.	./.	./.
chr1	120466444	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,5:28:151:0.033:2	./.	./.	./.
chr1	120467981	rs61756001	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,87:32:187:0.465:2	./.	./.	./.	./.	./.
chr1	120469147	rs61752484	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,87:33:186:0.468:2	./.	./.	./.	./.	./.
chr1	120478125	rs147223770	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,44:33:75:0.587:2	./.	./.
chr1	120497737	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:181,6:33:187:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr1	120539668	rs200464440	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:176,6:33:183:0.033:2	0/1:193,4:32:197:0.020:2	./.	0/1:182,7:29:189:0.037:2	./.	0/1:182,10:30:194:0.052:2	0/1:183,8:32:191:0.042:2	./.
chr1	120539687	rs2261101	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,12:33:180:0.067:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,9:32:182:0.049:2
chr1	120539742	rs2258139	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:185,5:30:190:0.026:2	0/1:154,7:32:161:0.043:2	./.	./.	./.	./.	./.	./.	./.	0/1:181,12:31:193:0.062:2	0/1:180,10:31:190:0.053:2
chr1	120548055	rs199592384	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,51:29:198:0.259:2	./.	./.	./.	./.
chr1	120548094	rs201643251	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:176,9:33:185:0.049:2	./.	./.	./.	0/1:175,8:32:183:0.044:2	0/1:178,14:30:193:0.073:2	0/1:183,12:33:196:0.062:2	./.	0/1:182,8:32:191:0.042:2	0/1:180,6:32:186:0.032:2	0/1:183,7:32:190:0.037:2
chr1	120572547	rs141882865	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:184,11:36:195:0.056:2	0/1:182,15:32:197:0.076:2	0/1:187,9:33:196:0.046:2	0/1:174,25:33:199:0.126:2	0/1:178,18:32:196:0.092:2	0/1:175,24:32:199:0.121:2	0/1:175,20:34:195:0.103:2	0/1:189,9:33:198:0.045:2	0/1:172,20:34:192:0.104:2	0/1:186,9:33:195:0.046:2	0/1:178,10:35:188:0.053:2
chr1	120572572	rs146242578	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:177,13:32:190:0.068:2	0/1:183,15:31:198:0.076:2	0/1:154,8:31:162:0.049:2	0/1:165,32:31:197:0.162:2	0/1:179,20:30:199:0.101:2	0/1:164,33:31:197:0.168:2	0/1:177,21:31:198:0.106:2	0/1:185,11:31:196:0.056:2	0/1:167,28:33:195:0.144:2	0/1:176,19:31:195:0.097:2	0/1:180,14:33:195:0.072:2
chr1	120572612	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:150,46:33:196:0.235:2	0/1:145,54:33:199:0.271:2	0/1:143,7:32:151:0.047:2	0/1:163,32:33:195:0.164:2	0/1:182,17:32:199:0.085:2	./.	0/1:182,17:33:199:0.085:2	0/1:177,19:33:196:0.097:2	0/1:169,27:34:196:0.138:2	0/1:180,18:33:198:0.091:2	0/1:173,23:34:196:0.117:2
chr1	120611964	rs11810554	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr1	120842039	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:35:197:0.025:2	./.	./.	./.
chr1	120846009	rs372041034	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:31:194:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	120846060	rs199780572	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,84:32:191:0.440:2	0/1:115,81:32:196:0.413:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	120854528	rs78105048	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,70:32:199:0.352:2	./.	./.	./.
chr1	120930077	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	120934414	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,9:32:196:0.046:2	./.	./.	./.
chr1	120934573	rs201922049	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,30:32:197:0.152:2	./.	./.	./.	0/1:159,33:33:193:0.172:2
chr1	143767466	rs77641628	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,3:32:42:0.071:2	0/1:20,3:33:23:0.130:2	./.	./.
chr1	143767513	rs6604511	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:57,4:31:62:0.066:2	./.	./.	0/1:43,14:31:57:0.246:2	0/1:42,20:30:62:0.323:2	0/1:29,18:30:47:0.383:2	0/1:31,9:30:40:0.225:2	0/1:43,15:30:58:0.259:2	0/1:33,4:30:37:0.108:2	0/1:35,7:33:42:0.167:2	0/1:44,5:33:49:0.102:2
chr1	143767522	rs6604512	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:65,4:33:69:0.058:2	0/1:40,3:33:43:0.070:2	./.	0/1:48,14:32:62:0.226:2	0/1:43,21:31:64:0.328:2	0/1:33,16:32:49:0.327:2	0/1:37,8:30:45:0.178:2	0/1:41,23:33:64:0.359:2	0/1:32,4:32:36:0.111:2	0/1:37,8:31:45:0.178:2	0/1:46,4:33:50:0.080:2
chr1	143767547	rs2490183	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:64,4:32:68:0.059:2	./.	./.	0/1:61,19:30:80:0.238:2	0/1:47,15:30:62:0.242:2	0/1:43,13:30:56:0.232:2	0/1:45,6:29:51:0.118:2	0/1:48,26:30:74:0.351:2	./.	0/1:51,6:28:57:0.105:2	./.
chr1	143767628	rs6604514	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:120,13:32:133:0.098:2	0/1:74,9:29:83:0.108:2	0/1:15,5:31:20:0.250:2	0/1:122,20:31:142:0.141:2	0/1:75,12:31:87:0.138:2	0/1:122,13:30:135:0.096:2	0/1:93,5:30:98:0.051:2	0/1:118,20:31:138:0.145:2	0/1:103,19:31:122:0.156:2	0/1:105,16:30:121:0.132:2	0/1:144,11:32:155:0.071:2
chr1	143767643	rs61824238	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,51:30:152:0.336:2	0/1:60,35:30:95:0.368:2	0/1:13,7:28:20:0.350:2	0/1:103,39:30:142:0.275:2	0/1:77,16:30:93:0.172:2	0/1:105,43:30:148:0.291:2	0/1:90,14:30:104:0.135:2	0/1:121,29:31:151:0.193:2	0/1:93,39:30:132:0.295:2	0/1:95,37:31:132:0.280:2	0/1:118,56:31:174:0.322:2
chr1	143767646	rs148974023	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,47:29:139:0.338:2	./.	./.
chr1	143767739	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,12:32:108:0.111:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	143767778	rs6604516	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:102,91:32:195:0.472:2	0/1:124,72:32:196:0.367:2	0/1:90,69:31:159:0.434:2	0/1:140,56:33:196:0.286:2	0/1:138,56:32:194:0.289:2	0/1:137,55:33:192:0.286:2	0/1:145,54:33:199:0.271:2	0/1:143,51:33:194:0.263:2	0/1:143,49:34:192:0.255:2	0/1:126,71:32:197:0.360:2	0/1:136,51:34:187:0.273:2
chr1	143767833	rs7521153	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:120,55:27:175:0.314:2	0/1:128,53:27:181:0.293:2	0/1:87,37:27:124:0.298:2	0/1:137,60:27:197:0.305:2	0/1:138,52:27:190:0.274:2	0/1:145,53:27:198:0.268:2	0/1:149,44:27:193:0.228:2	0/1:146,50:27:196:0.255:2	0/1:128,70:28:198:0.354:2	0/1:140,55:26:195:0.282:2	0/1:134,59:26:193:0.306:2
chr1	143767878	rs7513869	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:120,47:31:167:0.281:2	0/1:124,61:31:185:0.330:2	0/1:48,10:32:58:0.172:2	0/1:124,57:31:182:0.315:2	0/1:123,55:31:178:0.309:2	0/1:129,48:30:177:0.271:2	0/1:131,49:31:180:0.272:2	0/1:133,46:31:179:0.257:2	0/1:119,57:32:176:0.324:2	0/1:140,32:32:172:0.186:2	0/1:126,55:31:181:0.304:2
chr1	143767935	rs7521254	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:117,25:33:142:0.176:2	0/1:73,32:33:105:0.305:2	./.	0/1:125,24:33:149:0.161:2	0/1:87,28:31:115:0.243:2	0/1:96,24:32:120:0.200:2	0/1:73,27:32:100:0.270:2	0/1:112,20:33:132:0.152:2	0/1:116,24:33:140:0.171:2	0/1:93,22:32:115:0.191:2	0/1:124,31:32:155:0.200:2
chr1	143767943	rs72701807	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,36:32:98:0.367:2	0/1:76,51:32:127:0.402:2	./.	./.	0/1:95,59:33:154:0.383:2
chr1	143768035	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,5:21:36:0.139:2	./.	./.	./.	0/1:26,6:28:32:0.188:2	./.	./.
chr1	143768046	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,4:25:34:0.118:2	0/1:24,5:22:29:0.172:2	./.	./.	0/1:20,6:22:26:0.231:2	./.	./.
chr1	143768108	rs7514079	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,12:31:21:0.571:2	./.	./.	0/1:10,7:31:17:0.412:2	0/1:9,9:27:18:0.500:2	0/1:8,13:27:21:0.619:2	0/1:8,4:30:12:0.333:2	./.	0/1:6,3:31:9:0.333:2	0/1:4,3:28:7:0.429:2	0/1:11,11:30:22:0.500:2
chr1	143768137	rs7521440	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,6:32:12:0.500:2	./.	0/1:1,2:33:3:0.667:2	0/1:6,3:33:9:0.333:2	0/1:7,6:26:13:0.462:2	0/1:5,8:31:13:0.615:2	./.	./.	0/1:2,3:31:5:0.600:2	./.	0/1:7,6:28:13:0.462:2
chr1	143768139	rs7550186	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,6:32:11:0.545:2	./.	./.	0/1:6,3:31:9:0.333:2	0/1:7,6:28:13:0.462:2	0/1:5,8:30:13:0.615:2	./.	./.	0/1:2,3:32:5:0.600:2	./.	0/1:7,6:30:13:0.462:2
chr1	143906122	rs373752917	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:187,7:32:195:0.036:2	0/1:184,12:32:196:0.061:2	./.	0/1:192,7:32:199:0.035:2	0/1:194,5:31:199:0.025:2	./.	./.	./.	0/1:193,6:31:199:0.030:2	./.	0/1:192,6:33:198:0.030:2
chr1	143914163	rs148754361	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:81,26:23:107:0.243:2	0/1:98,22:24:120:0.183:2	./.	0/1:118,34:25:152:0.224:2	0/1:120,32:21:153:0.211:2	0/1:78,34:24:112:0.304:2	0/1:100,26:23:126:0.206:2	0/1:114,24:22:138:0.174:2	0/1:110,23:23:133:0.173:2	0/1:95,14:20:109:0.128:2	0/1:77,16:20:93:0.172:2
chr1	144014051	rs1884147	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,16:29:55:0.291:2	0/1:27,5:30:32:0.156:2	./.	0/1:47,13:26:61:0.217:2	0/1:60,12:30:72:0.167:2	0/1:47,16:30:63:0.254:2	0/1:53,19:28:72:0.264:2	0/1:63,34:30:97:0.351:2	0/1:52,25:31:77:0.325:2	0/1:39,13:30:52:0.250:2	0/1:61,18:30:79:0.228:2
chr1	144014068	rs1884146	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,29:27:49:0.592:2	0/1:8,19:27:27:0.704:2	0/1:6,3:28:9:0.333:2	0/1:13,36:27:49:0.735:2	0/1:32,29:29:61:0.475:2	0/1:19,32:29:51:0.627:2	0/1:16,31:28:47:0.660:2	0/1:24,50:28:74:0.676:2	0/1:31,30:29:61:0.492:2	0/1:18,25:28:43:0.581:2	0/1:29,36:27:65:0.554:2
chr1	144053567	rs202144114	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:149,43:32:192:0.224:2	0/1:150,48:32:198:0.242:2	0/1:123,34:31:157:0.217:2	0/1:150,44:32:194:0.227:2	0/1:144,54:31:198:0.273:2	0/1:143,53:32:196:0.270:2	0/1:152,47:31:199:0.236:2	0/1:156,40:32:196:0.204:2	0/1:142,48:32:192:0.253:2	0/1:145,51:32:197:0.260:2	0/1:141,49:32:190:0.258:2
chr1	144363849	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:34:9:0.333:2	./.	./.	./.
chr1	144363953	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:12,4:26:16:0.250:2	./.	./.	./.	./.	./.	0/1:25,4:27:29:0.138:2	./.	0/1:33,4:26:37:0.108:2	0/1:10,3:27:13:0.231:2	./.
chr1	144363963	.	T	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,11:32:24:0.458:2	0/1:8,5:32:13:0.385:2	./.	0/1:34,3:32:37:0.081:2	0/1:31,6:31:37:0.162:2	0/1:46,7:31:53:0.132:2	0/1:28,6:33:34:0.176:2	0/1:10,6:33:16:0.375:2	0/1:35,7:33:42:0.167:2	0/1:8,8:32:16:0.500:2	0/1:23,7:30:30:0.233:2
chr1	144364062	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,3:31:20:0.150:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	144364073	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,66:32:132:0.500:2	0/1:49,51:33:100:0.510:2	0/1:12,13:32:25:0.520:2	0/1:131,67:32:199:0.338:2	0/1:135,65:31:200:0.325:2	0/1:135,62:32:197:0.315:2	0/1:146,52:33:198:0.263:2	0/1:97,100:32:198:0.508:2	0/1:144,52:33:196:0.265:2	0/1:97,76:33:173:0.439:2	0/1:111,80:32:191:0.419:2
chr1	144364083	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,111:33:182:0.610:2	0/1:51,84:32:135:0.622:2	0/1:14,18:31:32:0.563:2	0/1:105,89:33:194:0.459:2	0/1:116,81:33:197:0.411:2	0/1:106,92:32:198:0.465:2	0/1:135,63:33:198:0.318:2	0/1:90,103:32:193:0.534:2	0/1:131,64:33:195:0.328:2	0/1:94,99:33:193:0.513:2	0/1:97,97:32:194:0.500:2
chr1	144364195	rs200241118	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,146:28:148:0.993:2	0/1:5,85:28:90:0.944:2	0/1:0,54:29:54:1.00:2	0/1:3,144:29:147:0.980:2	0/1:5,153:28:158:0.968:2	0/1:3,158:29:162:0.981:2	0/1:68,114:29:182:0.626:2	0/1:46,135:28:181:0.746:2	0/1:2,168:29:170:0.988:2	0/1:2,145:28:148:0.986:2	0/1:62,122:28:184:0.663:2
chr1	144364250	.	T	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,84:32:85:0.988:2	0/1:0,35:32:35:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,62:32:62:1.00:2	0/1:2,55:31:58:0.965:2	0/1:1,63:32:64:0.984:2	0/1:46,37:32:83:0.446:2	0/1:0,70:31:70:1.00:2	0/1:0,71:33:72:1.00:2	0/1:0,59:33:59:1.00:2	0/1:65,60:31:125:0.480:2
chr1	144364331	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,6:27:25:0.240:2	./.	./.	./.	./.	./.	./.	./.
chr1	144364443	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.
chr1	144364510	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.
chr1	144618123	rs61809735	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:161,24:32:186:0.130:2	0/1:96,6:29:102:0.059:2	./.	0/1:167,23:32:190:0.121:2	0/1:163,16:32:179:0.089:2	0/1:160,35:32:195:0.179:2	0/1:176,20:32:196:0.102:2	0/1:174,19:32:193:0.098:2	0/1:156,32:32:188:0.170:2	0/1:165,25:31:190:0.132:2	./.
chr1	144618144	rs61809736	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,151:30:153:0.987:2	0/1:0,90:29:90:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,161:30:161:1.00:2	0/1:1,165:30:166:0.994:2	0/1:0,154:30:154:1.00:2	0/1:58,119:30:177:0.672:2	0/1:0,156:30:156:1.00:2	0/1:0,158:31:158:1.00:2	0/1:0,157:30:157:1.00:2	0/1:0,154:31:154:1.00:2
chr1	144618165	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,21:30:132:0.159:2	./.	./.	./.
chr1	144618201	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,32:26:95:0.337:2	0/1:23,24:26:47:0.511:2	0/1:8,4:26:12:0.333:2	0/1:86,39:26:125:0.312:2	0/1:42,22:27:64:0.344:2	0/1:69,38:27:107:0.355:2	0/1:70,18:27:89:0.205:2	0/1:66,28:27:94:0.298:2	0/1:72,27:28:99:0.273:2	0/1:80,23:26:104:0.223:2	0/1:54,18:26:72:0.250:2
chr1	144618235	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,3:33:36:0.083:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	144618274	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,4:31:100:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr1	144619896	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,4:31:26:0.154:2	./.	./.	./.
chr1	144619903	rs71527379	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:121,14:33:138:0.104:2	0/1:76,8:32:84:0.095:2	./.	./.	./.	./.	0/1:1,8:33:10:0.889:2	0/1:3,20:32:23:0.870:2	./.	0/1:112,11:32:124:0.089:2	0/1:3,26:33:30:0.897:2
chr1	144619914	.	C	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:121,7:27:128:0.055:2	./.	./.	0/1:124,8:26:132:0.061:2	./.	0/1:69,8:23:77:0.104:2	0/1:82,16:27:98:0.163:2	0/1:192,6:27:198:0.030:2	0/1:180,7:26:187:0.037:2	0/1:89,22:26:111:0.198:2
chr1	144619969	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,6:32:198:0.030:2	./.	./.	./.
chr1	144620009	rs200933214	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:168,27:31:195:0.138:2	0/1:169,27:31:196:0.138:2	0/1:170,23:31:193:0.119:2	./.	./.	./.	0/1:181,17:28:198:0.086:2	0/1:186,12:31:198:0.061:2	./.	0/1:184,9:33:193:0.047:2	0/1:166,26:31:192:0.135:2
chr1	144620077	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:180,14:32:194:0.072:2	0/1:182,12:32:194:0.062:2	0/1:92,19:31:111:0.171:2	0/1:190,10:32:200:0.050:2	0/1:168,30:31:198:0.152:2	0/1:168,27:31:195:0.138:2	0/1:178,19:31:197:0.096:2	0/1:179,17:31:196:0.087:2	0/1:174,21:32:195:0.108:2	0/1:173,24:32:197:0.122:2	./.
chr1	144620091	rs151155946	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:139,48:31:187:0.257:2	0/1:116,38:32:154:0.247:2	0/1:58,14:31:72:0.194:2	./.	./.	./.	0/1:111,83:32:194:0.428:2	0/1:103,90:32:193:0.466:2	./.	0/1:138,47:33:185:0.254:2	0/1:124,58:33:182:0.319:2
chr1	144814702	rs202229831	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:60,7:31:67:0.104:2	0/1:36,7:32:45:0.163:2	./.	0/1:84,5:31:89:0.056:2	./.	./.	0/1:80,7:32:89:0.080:2	0/1:75,8:32:83:0.096:2	0/1:66,4:33:70:0.057:2	0/1:47,5:30:52:0.096:2	0/1:93,7:32:100:0.070:2
chr1	144814763	.	G	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:79,13:32:92:0.141:2	0/1:46,8:32:54:0.148:2	./.	./.	./.	./.	0/1:71,15:33:86:0.174:2	0/1:86,31:32:117:0.265:2	./.	0/1:74,10:32:84:0.119:2	0/1:85,11:33:96:0.115:2
chr1	144816476	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,5:33:123:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr1	144816477	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:121,8:30:129:0.062:2	./.	./.	./.	0/1:80,5:33:85:0.059:2	0/1:128,5:35:133:0.038:2	0/1:96,5:34:101:0.050:2	./.	0/1:140,7:34:147:0.048:2	./.	0/1:127,7:28:134:0.052:2
chr1	144816538	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:126,5:30:131:0.038:2	./.	./.	./.	./.	./.	./.
chr1	144816591	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,8:32:189:0.042:2	./.	./.
chr1	144816621	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:164,6:34:170:0.035:2	./.	./.	./.	./.	0/1:180,5:32:185:0.027:2	0/1:185,5:28:190:0.026:2	./.	0/1:186,4:34:190:0.021:2	./.	0/1:172,6:33:179:0.034:2
chr1	144825519	rs678781	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:7,15:32:23:0.682:2	0/1:11,13:31:24:0.542:2	./.	./.	0/1:33,3:32:36:0.083:2	./.	./.	./.	./.	0/1:29,4:33:34:0.121:2	./.
chr1	144828548	rs200319336	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:94,6:32:100:0.060:2	./.	./.	0/1:150,10:33:160:0.063:2	./.	./.	0/1:103,7:33:110:0.064:2	0/1:141,5:33:146:0.034:2	0/1:153,5:33:158:0.032:2	0/1:115,7:32:122:0.057:2	0/1:167,10:31:177:0.056:2
chr1	144828556	rs12030770	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,5:33:108:0.046:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	144828583	rs28712116	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:97,11:31:108:0.102:2	0/1:73,5:30:78:0.064:2	./.	0/1:186,8:30:194:0.041:2	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2	./.	0/1:178,7:28:185:0.038:2
chr1	144828599	rs28736716	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,9:31:140:0.064:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	144828610	rs12026633	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:122,35:27:157:0.223:2	0/1:90,15:24:105:0.143:2	./.	0/1:186,10:26:196:0.051:2	0/1:157,6:25:163:0.037:2	./.	./.	./.	./.	0/1:189,6:26:195:0.031:2	0/1:184,8:25:192:0.042:2
chr1	144828613	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,10:30:198:0.051:2	./.	./.	./.	./.
chr1	144828618	rs200013824	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:188,5:32:193:0.026:2	./.	./.	./.	0/1:192,5:32:197:0.025:2	0/1:190,5:30:195:0.026:2	./.	./.	./.	0/1:191,6:31:197:0.030:2	0/1:187,5:33:192:0.026:2
chr1	144828683	rs369617939	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:183,5:31:188:0.027:2	./.	./.	./.	0/1:188,5:33:193:0.026:2	./.	./.	./.	./.	./.	./.
chr1	144828704	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.
chr1	144828722	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:33:187:0.021:2	./.	./.	./.
chr1	144828764	rs114576842	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:156,4:31:160:0.025:2	./.	./.	0/1:138,5:33:143:0.035:2	0/1:105,6:31:111:0.054:2	0/1:132,9:32:141:0.064:2	0/1:118,5:31:123:0.041:2	0/1:137,8:32:145:0.055:2	./.	0/1:133,8:29:141:0.057:2	0/1:151,5:29:156:0.032:2
chr1	144828765	rs1043478	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:133,21:32:158:0.136:2	0/1:95,10:33:107:0.095:2	0/1:20,3:34:26:0.130:2	./.	./.	./.	0/1:102,14:33:122:0.121:2	./.	./.	./.	./.
chr1	144828784	rs78667364	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:139,19:32:158:0.120:2	0/1:91,8:33:99:0.081:2	0/1:21,3:33:24:0.125:2	0/1:133,24:33:157:0.153:2	0/1:93,18:34:111:0.162:2	0/1:130,27:33:157:0.172:2	0/1:93,17:33:110:0.155:2	0/1:122,19:34:141:0.135:2	0/1:139,16:32:155:0.103:2	0/1:130,13:33:143:0.091:2	0/1:144,20:33:164:0.122:2
chr1	144852379	rs113954821	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,26:31:115:0.226:2	./.	./.	./.	./.
chr1	144852390	rs61804988	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,35:32:74:0.473:2	0/1:18,18:32:36:0.500:2	0/1:12,3:32:15:0.200:2	0/1:79,44:32:123:0.358:2	0/1:81,74:32:155:0.477:2	0/1:74,75:32:149:0.503:2	0/1:65,61:32:126:0.484:2	0/1:68,59:32:127:0.465:2	0/1:62,46:33:108:0.426:2	0/1:70,49:32:119:0.412:2	0/1:49,43:31:92:0.467:2
chr1	144852476	rs1616066	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,19:29:49:0.388:2	0/1:14,5:28:19:0.263:2	0/1:6,4:29:10:0.400:2	0/1:41,38:29:79:0.481:2	0/1:32,33:29:65:0.508:2	0/1:44,24:29:68:0.353:2	0/1:36,27:28:63:0.429:2	0/1:28,34:29:62:0.548:2	0/1:39,33:30:72:0.458:2	0/1:36,39:29:75:0.520:2	0/1:48,32:29:80:0.400:2
chr1	144854180	rs4997148	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:123,40:30:163:0.245:2	0/1:144,35:29:179:0.196:2	0/1:48,20:30:68:0.294:2	0/1:119,34:28:153:0.222:2	0/1:117,23:29:140:0.164:2	0/1:153,14:29:167:0.084:2	0/1:108,34:28:142:0.239:2	0/1:128,25:29:153:0.163:2	0/1:132,33:30:165:0.200:2	0/1:123,36:29:159:0.226:2	0/1:125,43:29:168:0.256:2
chr1	144854528	rs78461771	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:109,35:27:144:0.243:2	0/1:52,19:28:71:0.268:2	./.	0/1:157,28:28:185:0.151:2	0/1:173,23:28:196:0.117:2	0/1:172,15:29:187:0.080:2	0/1:167,13:29:180:0.072:2	0/1:133,45:29:178:0.253:2	0/1:122,54:29:176:0.307:2	0/1:145,14:29:159:0.088:2	0/1:159,10:27:169:0.059:2
chr1	144854537	rs3851872	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:111,35:32:146:0.240:2	0/1:57,17:31:74:0.230:2	./.	0/1:154,24:32:178:0.135:2	0/1:172,20:30:192:0.104:2	0/1:170,13:33:183:0.071:2	0/1:169,12:32:181:0.066:2	0/1:136,42:32:178:0.236:2	0/1:124,56:32:180:0.311:2	0/1:158,13:33:171:0.076:2	0/1:163,10:29:173:0.058:2
chr1	144854564	rs147331822	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,25:31:173:0.145:2	./.	./.	./.	./.
chr1	144854581	rs78371650	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:140,25:33:165:0.152:2	0/1:96,22:32:118:0.186:2	./.	0/1:146,19:33:165:0.115:2	0/1:155,16:33:171:0.094:2	0/1:156,14:33:170:0.082:2	0/1:152,19:32:171:0.111:2	0/1:139,28:32:167:0.168:2	0/1:154,14:33:168:0.083:2	0/1:160,14:33:174:0.080:2	0/1:156,15:31:171:0.088:2
chr1	144854594	rs79028512	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:133,23:30:156:0.147:2	0/1:97,22:30:119:0.185:2	./.	0/1:148,20:28:169:0.119:2	0/1:157,10:30:167:0.060:2	0/1:154,20:29:174:0.115:2	0/1:138,20:28:158:0.127:2	0/1:129,31:29:160:0.194:2	0/1:151,17:30:168:0.101:2	0/1:146,20:29:166:0.120:2	0/1:150,14:28:164:0.085:2
chr1	144854597	rs3851873	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,100:32:140:0.714:2	0/1:30,83:32:113:0.735:2	0/1:15,6:32:21:0.286:2	0/1:76,83:33:160:0.522:2	0/1:73,80:32:154:0.523:2	0/1:86,76:33:162:0.469:2	0/1:82,59:32:141:0.418:2	0/1:66,91:32:157:0.580:2	0/1:88,69:34:157:0.439:2	0/1:81,70:33:151:0.464:2	0/1:84,64:32:148:0.432:2
chr1	144854598	rs3863691	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,61:32:144:0.424:2	0/1:70,47:32:117:0.402:2	0/1:16,5:31:21:0.238:2	0/1:99,64:32:163:0.393:2	0/1:98,58:32:156:0.372:2	0/1:113,56:32:169:0.331:2	0/1:104,40:33:144:0.278:2	0/1:102,59:32:161:0.366:2	0/1:110,52:33:162:0.321:2	0/1:108,51:33:159:0.321:2	0/1:109,51:31:160:0.319:2
chr1	144854608	rs2798855	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,32:32:181:0.177:2	./.	./.	./.
chr1	144855782	rs71246352	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,28:33:112:0.250:2	0/1:61,11:33:72:0.153:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	144855812	rs1699754	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,60:29:89:0.674:2	0/1:15,30:28:45:0.667:2	0/1:9,7:31:16:0.438:2	0/1:63,28:28:91:0.308:2	0/1:57,30:27:87:0.345:2	0/1:59,39:29:99:0.398:2	0/1:78,35:25:113:0.310:2	0/1:64,31:26:95:0.326:2	0/1:57,31:28:88:0.352:2	0/1:62,44:28:106:0.415:2	0/1:58,32:27:90:0.356:2
chr1	144855866	rs1698582	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,17:32:50:0.340:2	0/1:14,6:32:21:0.300:2	./.	0/1:49,17:32:66:0.258:2	0/1:40,14:31:55:0.259:2	0/1:36,18:30:54:0.333:2	0/1:68,13:29:81:0.160:2	0/1:56,16:30:73:0.222:2	0/1:43,18:32:61:0.295:2	0/1:41,19:30:61:0.317:2	0/1:41,21:30:63:0.339:2
chr1	144856817	rs3844239	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:39,3:33:42:0.071:2	./.	0/1:63,4:33:67:0.060:2	0/1:68,4:31:72:0.056:2	./.	./.	./.	0/1:67,4:30:71:0.056:2	./.	./.
chr1	144856900	rs144438268	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,32:32:199:0.161:2	./.	./.	./.
chr1	144856941	rs150294397	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,52:32:195:0.267:2	./.	./.	0/1:152,39:32:191:0.204:2
chr1	144856964	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,14:32:195:0.072:2	0/1:176,17:32:194:0.088:2	./.	./.	0/1:172,21:32:193:0.109:2	0/1:178,8:30:186:0.043:2
chr1	144863320	rs139822181	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,56:33:198:0.283:2	./.	./.	./.
chr1	144863355	rs200086940	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,11:33:197:0.056:2	./.	0/1:181,16:33:197:0.081:2	./.	./.
chr1	144863366	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,5:30:192:0.026:2	0/1:194,5:33:199:0.025:2	./.	./.
chr1	144863401	rs71225704	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,13:32:27:0.481:2	./.	./.	./.	0/1:113,52:32:165:0.315:2	0/1:155,41:31:196:0.209:2	./.	0/1:145,38:33:183:0.208:2	0/1:152,41:32:193:0.212:2
chr1	144864143	rs112629810	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,22:32:192:0.115:2	./.	./.	./.
chr1	144865850	rs1613780	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,44:31:117:0.376:2	0/1:37,34:32:71:0.479:2	0/1:14,9:31:23:0.391:2	0/1:93,72:32:165:0.436:2	0/1:96,51:31:147:0.347:2	0/1:102,76:31:178:0.427:2	0/1:100,69:31:169:0.408:2	0/1:132,64:31:196:0.327:2	0/1:107,72:32:179:0.402:2	0/1:108,40:31:148:0.270:2	0/1:113,57:32:170:0.335:2
chr1	144866643	rs1620560	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,21:32:43:0.488:2	0/1:18,13:31:31:0.419:2	0/1:13,6:33:19:0.316:2	0/1:51,42:32:93:0.452:2	0/1:42,15:30:57:0.263:2	0/1:44,38:32:82:0.463:2	0/1:66,43:32:109:0.394:2	0/1:64,42:32:106:0.396:2	0/1:39,32:33:71:0.451:2	0/1:49,40:32:89:0.449:2	0/1:54,38:33:92:0.413:2
chr1	144866662	rs1064044	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,40:32:46:0.870:2	0/1:8,17:32:25:0.680:2	0/1:13,6:32:19:0.316:2	0/1:45,41:32:86:0.477:2	0/1:40,22:32:62:0.355:2	0/1:41,33:32:74:0.446:2	0/1:66,42:32:108:0.389:2	0/1:69,43:32:112:0.384:2	0/1:41,30:33:71:0.423:2	0/1:48,35:31:83:0.422:2	0/1:58,33:32:91:0.363:2
chr1	144868170	rs1628310	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,30:28:63:0.476:2	0/1:18,21:30:39:0.538:2	0/1:2,6:27:8:0.750:2	0/1:23,35:28:58:0.603:2	0/1:31,40:29:71:0.563:2	0/1:33,33:29:66:0.500:2	0/1:32,50:29:82:0.610:2	0/1:57,42:29:99:0.424:2	0/1:39,41:29:80:0.513:2	0/1:37,23:28:60:0.383:2	0/1:45,38:30:83:0.458:2
chr1	144871738	rs1698605	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,12:31:33:0.364:2	0/1:12,13:31:25:0.520:2	0/1:3,6:31:9:0.667:2	0/1:23,20:31:43:0.465:2	0/1:42,21:30:63:0.333:2	0/1:18,24:31:42:0.571:2	0/1:37,17:30:54:0.315:2	0/1:30,30:31:60:0.500:2	0/1:26,6:32:32:0.188:2	0/1:25,12:31:37:0.324:2	0/1:30,13:31:43:0.302:2
chr1	144871755	rs1778159	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,17:30:44:0.386:2	0/1:13,13:32:26:0.500:2	./.	0/1:26,20:31:47:0.435:2	0/1:42,25:31:67:0.373:2	0/1:23,27:33:50:0.540:2	0/1:35,22:32:57:0.386:2	0/1:32,36:32:68:0.529:2	0/1:29,9:33:38:0.237:2	0/1:23,15:32:38:0.395:2	0/1:31,17:31:48:0.354:2
chr1	144871782	rs1778158	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,21:33:51:0.412:2	0/1:22,12:31:34:0.353:2	./.	0/1:37,19:33:56:0.339:2	0/1:44,27:32:71:0.380:2	0/1:29,28:33:57:0.491:2	0/1:39,28:32:67:0.418:2	0/1:39,48:32:87:0.552:2	0/1:39,12:33:51:0.235:2	0/1:28,15:32:43:0.349:2	0/1:39,24:32:63:0.381:2
chr1	144871829	rs111761861	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,23:28:95:0.242:2	./.	./.	./.
chr1	144873887	rs1699787	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:108,76:32:185:0.413:2	0/1:68,52:32:120:0.433:2	0/1:10,9:32:19:0.474:2	0/1:100,85:32:185:0.459:2	0/1:95,85:32:180:0.472:2	0/1:106,81:31:187:0.433:2	0/1:101,83:31:184:0.451:2	0/1:96,85:31:181:0.470:2	0/1:88,78:33:166:0.470:2	0/1:99,83:31:182:0.456:2	0/1:106,75:32:181:0.414:2
chr1	144874760	rs1610774	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:94,74:33:168:0.440:2	0/1:67,57:33:124:0.460:2	0/1:13,22:33:35:0.629:2	0/1:103,95:32:198:0.480:2	0/1:117,80:33:197:0.406:2	0/1:95,81:32:176:0.460:2	0/1:99,100:32:199:0.503:2	0/1:100,95:32:195:0.487:2	0/1:108,73:34:181:0.403:2	0/1:81,75:32:156:0.481:2	0/1:96,77:32:173:0.445:2
chr1	144874815	rs1778155	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:162,35:29:197:0.178:2	./.	0/1:94,97:29:191:0.508:2	0/1:93,76:28:169:0.450:2	./.	0/1:128,35:28:163:0.215:2	0/1:108,76:28:184:0.413:2
chr1	144875979	rs71664005	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,16:32:66:0.242:2	./.	./.	./.	./.	./.	0/1:102,23:33:125:0.184:2
chr1	144877176	rs2762875	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:115,71:34:186:0.382:2	0/1:94,100:32:194:0.515:2	0/1:15,20:32:35:0.571:2	0/1:105,85:33:190:0.447:2	0/1:107,91:32:198:0.460:2	0/1:123,75:32:198:0.379:2	0/1:110,83:33:193:0.430:2	0/1:115,82:32:197:0.416:2	0/1:105,87:34:192:0.453:2	0/1:110,82:33:192:0.427:2	0/1:107,78:33:185:0.422:2
chr1	144879090	rs1778120	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,26:33:94:0.277:2	0/1:68,38:33:106:0.358:2	./.	0/1:73,20:32:93:0.215:2	0/1:100,21:34:121:0.174:2
chr1	144879264	rs2798901	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,41:30:71:0.577:2	0/1:23,21:28:44:0.477:2	0/1:7,12:31:19:0.632:2	0/1:35,22:31:57:0.386:2	0/1:13,39:28:52:0.750:2	0/1:40,29:29:69:0.420:2	0/1:0,46:29:46:1.00:2	0/1:1,90:29:91:0.989:2	0/1:56,37:30:93:0.398:2	0/1:20,30:30:50:0.600:2	0/1:0,96:29:96:1.00:2
chr1	144879339	rs145959230	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,23:32:60:0.383:2	./.	./.	./.	./.
chr1	144879375	rs1747958	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,39:30:73:0.534:2	0/1:25,31:29:56:0.554:2	0/1:3,12:29:15:0.800:2	0/1:39,44:30:83:0.530:2	0/1:43,31:28:74:0.419:2	0/1:52,54:29:106:0.509:2	0/1:48,35:30:83:0.422:2	0/1:67,49:30:116:0.422:2	0/1:52,52:31:104:0.500:2	0/1:38,38:29:76:0.500:2	0/1:70,66:29:136:0.485:2
chr1	144879485	rs113467089	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,23:32:73:0.315:2	./.	./.	./.
chr1	144880832	rs12568796	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,14:30:37:0.378:2	./.	./.	./.	0/1:96,83:29:179:0.464:2	0/1:112,72:29:184:0.391:2	./.	0/1:141,33:30:174:0.190:2	0/1:142,30:31:172:0.174:2
chr1	144881463	rs147815016	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,32:32:199:0.161:2	0/1:101,36:32:137:0.263:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	144882581	rs1699836	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:93,99:29:192:0.516:2	0/1:75,57:29:132:0.432:2	0/1:10,16:29:26:0.615:2	0/1:109,91:29:200:0.455:2	0/1:106,86:28:193:0.448:2	0/1:109,88:29:197:0.447:2	0/1:104,90:28:194:0.464:2	0/1:104,91:28:195:0.467:2	0/1:115,83:30:198:0.419:2	0/1:107,87:29:195:0.448:2	0/1:107,91:28:198:0.460:2
chr1	144882823	rs1698647	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:100,69:32:169:0.408:2	0/1:64,66:31:130:0.508:2	0/1:24,10:29:34:0.294:2	0/1:90,63:32:153:0.412:2	0/1:115,62:31:177:0.350:2	0/1:109,69:31:178:0.388:2	0/1:117,63:32:180:0.350:2	0/1:113,69:32:182:0.379:2	0/1:119,65:32:184:0.353:2	0/1:96,69:31:165:0.418:2	0/1:91,74:32:166:0.448:2
chr1	144886197	rs1698624	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,55:32:115:0.482:2	0/1:28,20:32:48:0.417:2	0/1:8,3:32:11:0.273:2	0/1:71,61:32:132:0.462:2	0/1:49,40:32:89:0.449:2	0/1:67,52:31:119:0.437:2	0/1:34,45:32:79:0.570:2	0/1:62,53:31:115:0.461:2	0/1:62,44:32:106:0.415:2	0/1:54,61:30:115:0.530:2	0/1:70,60:32:130:0.462:2
chr1	144906500	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:180,10:30:190:0.053:2	./.	0/1:189,9:28:198:0.045:2	./.	0/1:184,10:29:194:0.052:2	./.	./.
chr1	144906508	rs34169189	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,80:33:191:0.419:2	./.	0/1:105,79:33:185:0.429:2
chr1	144909956	rs638260	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,82:32:168:0.488:2	./.	./.	0/1:117,26:32:143:0.182:2	./.	./.	./.	./.
chr1	144912153	rs1628172	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:29:82:1.00:2	0/1:0,56:29:56:1.00:2	0/1:7,7:27:14:0.500:2	0/1:0,92:30:92:1.00:2	0/1:32,44:29:76:0.579:2	0/1:67,55:30:122:0.451:2	0/1:0,81:30:81:1.00:2	0/1:41,68:29:109:0.624:2	0/1:0,86:30:86:1.00:2	0/1:54,48:29:102:0.471:2	0/1:41,95:30:136:0.699:2
chr1	144912233	rs1629011	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,33:30:82:0.402:2	0/1:26,16:31:42:0.381:2	0/1:15,8:31:23:0.348:2	0/1:47,38:32:85:0.447:2	0/1:35,16:31:51:0.314:2	0/1:47,36:31:84:0.434:2	0/1:44,20:31:64:0.313:2	0/1:60,34:32:94:0.362:2	0/1:60,29:32:89:0.326:2	0/1:49,34:32:83:0.410:2	0/1:66,51:32:118:0.436:2
chr1	144915561	rs1778111	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,52:32:136:0.385:2	0/1:42,36:31:78:0.462:2	0/1:8,15:31:23:0.652:2	0/1:109,81:31:190:0.426:2	0/1:98,66:31:164:0.402:2	0/1:91,66:31:157:0.420:2	0/1:115,62:31:177:0.350:2	0/1:122,75:30:197:0.381:2	0/1:101,68:32:169:0.402:2	0/1:94,51:31:145:0.352:2	0/1:83,78:32:161:0.484:2
chr1	144915624	rs1778112	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:68,36:32:104:0.346:2	0/1:35,17:32:52:0.327:2	0/1:0,3:33:3:1.00:2	0/1:66,31:30:97:0.320:2	0/1:71,15:32:86:0.174:2	0/1:55,39:29:94:0.415:2	0/1:56,16:29:72:0.222:2	0/1:72,25:32:97:0.258:2	0/1:63,29:31:92:0.315:2	0/1:58,24:32:82:0.293:2	0/1:61,20:31:81:0.247:2
chr1	144916676	rs1698683	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,89:31:190:0.468:2	0/1:57,71:31:128:0.555:2	0/1:31,5:30:36:0.139:2	0/1:92,81:30:173:0.468:2	0/1:92,25:30:117:0.214:2	0/1:104,71:31:175:0.406:2	./.	./.	0/1:92,68:31:160:0.425:2	0/1:124,48:31:172:0.279:2	./.
chr1	144916748	rs1747930	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,43:32:89:0.483:2	0/1:27,27:31:54:0.500:2	./.	0/1:34,29:32:63:0.460:2	0/1:28,25:31:53:0.472:2	0/1:34,24:32:58:0.414:2	0/1:26,27:31:53:0.509:2	0/1:35,30:32:65:0.462:2	0/1:25,30:33:55:0.545:2	0/1:33,28:32:61:0.459:2	0/1:59,34:32:93:0.366:2
chr1	144917546	rs1698682	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,56:33:130:0.431:2	0/1:44,29:33:73:0.397:2	0/1:10,7:32:17:0.412:2	0/1:82,66:33:148:0.446:2	0/1:83,68:32:151:0.450:2	0/1:73,74:32:147:0.503:2	0/1:72,57:32:129:0.442:2	0/1:77,65:33:142:0.458:2	0/1:87,64:33:151:0.424:2	0/1:85,62:32:147:0.422:2	0/1:73,67:32:140:0.479:2
chr1	144917841	rs1698681	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:102,82:30:184:0.446:2	0/1:105,87:30:192:0.453:2	0/1:32,31:30:63:0.492:2	0/1:106,85:30:191:0.445:2	0/1:104,94:30:198:0.475:2	0/1:103,86:30:189:0.455:2	0/1:110,76:30:186:0.409:2	0/1:103,92:30:195:0.472:2	0/1:87,96:31:183:0.525:2	0/1:103,94:30:197:0.477:2	0/1:99,89:29:188:0.473:2
chr1	144918957	rs1061308	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,67:30:142:0.475:2	0/1:61,46:30:107:0.430:2	0/1:16,9:28:25:0.360:2	0/1:89,71:29:160:0.444:2	0/1:59,76:29:135:0.563:2	0/1:71,56:29:127:0.441:2	0/1:69,60:30:130:0.465:2	0/1:80,86:29:166:0.518:2	0/1:99,67:29:167:0.404:2	0/1:76,60:30:136:0.441:2	0/1:82,104:30:187:0.559:2
chr1	144921895	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,58:32:197:0.294:2
chr1	144921924	rs71664015	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:135,38:31:173:0.220:2	./.	./.	./.	./.	./.	0/1:157,28:32:185:0.151:2
chr1	144922523	rs2455994	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,67:33:130:0.515:2	0/1:46,32:32:78:0.410:2	0/1:8,3:31:11:0.273:2	0/1:114,72:32:186:0.387:2	0/1:100,19:32:119:0.160:2	0/1:97,85:31:182:0.467:2	./.	./.	0/1:110,74:33:184:0.402:2	0/1:118,32:33:151:0.213:2	./.
chr1	144922583	rs1359300	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,64:32:134:0.478:2	0/1:45,40:32:85:0.471:2	0/1:9,6:29:15:0.400:2	0/1:93,63:31:156:0.404:2	0/1:69,32:31:101:0.317:2	0/1:83,59:30:142:0.415:2	0/1:90,50:31:140:0.357:2	0/1:88,66:31:154:0.429:2	0/1:95,67:32:162:0.414:2	0/1:100,71:32:171:0.415:2	0/1:98,60:31:158:0.380:2
chr1	144930596	rs2762867	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,19:33:42:0.452:2	0/1:21,10:32:31:0.323:2	0/1:2,2:33:4:0.500:2	0/1:15,30:32:45:0.667:2	0/1:19,9:31:28:0.321:2	0/1:21,33:31:54:0.611:2	0/1:25,17:31:42:0.405:2	0/1:34,15:30:49:0.306:2	0/1:20,22:32:42:0.524:2	0/1:21,8:33:29:0.276:2	0/1:37,19:31:56:0.339:2
chr1	144930940	rs2147326	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,35:33:63:0.556:2	0/1:23,19:31:42:0.452:2	0/1:1,6:32:7:0.857:2	0/1:43,32:32:75:0.427:2	0/1:44,48:32:92:0.522:2	0/1:50,53:32:103:0.515:2	0/1:42,41:32:83:0.494:2	0/1:65,69:32:134:0.515:2	0/1:42,42:33:84:0.500:2	0/1:34,34:33:68:0.500:2	0/1:36,44:32:80:0.550:2
chr1	144931087	rs41315684	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,21:32:54:0.389:2	0/1:33,13:30:46:0.283:2	./.	0/1:32,10:30:43:0.238:2	0/1:60,15:30:76:0.200:2
chr1	144931100	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,7:33:44:0.159:2	./.	./.	./.	./.	./.	./.	./.
chr1	144931330	rs2762745	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,49:31:105:0.471:2	0/1:26,23:29:49:0.469:2	0/1:4,4:29:8:0.500:2	0/1:77,57:29:134:0.425:2	0/1:84,55:30:140:0.396:2	0/1:74,41:29:115:0.357:2	0/1:91,88:30:179:0.492:2	0/1:83,76:30:159:0.478:2	0/1:74,61:30:135:0.452:2	0/1:63,47:30:110:0.427:2	0/1:78,51:30:129:0.395:2
chr1	144931392	rs2798893	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,40:31:102:0.392:2	0/1:29,31:32:60:0.517:2	0/1:7,3:32:10:0.300:2	0/1:69,62:30:131:0.473:2	0/1:117,68:31:185:0.368:2	0/1:68,59:31:128:0.465:2	0/1:91,71:31:162:0.438:2	0/1:76,100:31:176:0.568:2	0/1:71,75:32:146:0.514:2	0/1:62,42:31:104:0.404:2	0/1:90,49:30:139:0.353:2
chr1	144931461	rs41315685	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:32:16:0.375:2	./.	./.	./.	0/1:56,44:31:100:0.440:2	0/1:60,77:31:137:0.562:2	./.	0/1:64,26:31:90:0.289:2	0/1:94,23:32:117:0.197:2
chr1	144952207	rs3121544	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:158,35:32:193:0.181:2	0/1:172,24:33:196:0.122:2	./.	./.	0/1:170,28:32:198:0.141:2	0/1:142,54:33:196:0.276:2	0/1:175,21:32:196:0.107:2	0/1:152,43:32:195:0.221:2	0/1:174,22:34:196:0.112:2	./.	./.
chr1	144952220	rs139438772	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:134,56:29:192:0.295:2	0/1:140,47:31:188:0.251:2	0/1:81,28:30:109:0.257:2	0/1:147,46:29:193:0.238:2	0/1:140,56:30:196:0.286:2	0/1:142,54:31:196:0.276:2	0/1:120,75:30:196:0.385:2	0/1:116,80:30:196:0.408:2	0/1:145,46:30:191:0.241:2	0/1:149,44:30:193:0.228:2	0/1:134,50:31:185:0.272:2
chr1	144952255	rs148545794	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,27:30:194:0.140:2	0/1:177,17:27:194:0.088:2	./.	./.	./.
chr1	144952346	rs150616778	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,13:29:131:0.099:2	0/1:118,15:29:133:0.113:2	./.	./.	./.
chr1	144952569	rs376741952	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:95,13:33:108:0.120:2	0/1:58,10:32:68:0.147:2	./.	./.	0/1:104,28:32:132:0.212:2	0/1:111,52:31:163:0.319:2	./.	./.	./.	./.	./.
chr1	144952581	rs149078147	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:86,23:31:109:0.211:2	0/1:53,11:33:64:0.172:2	./.	0/1:146,34:33:180:0.189:2	0/1:110,34:32:144:0.236:2	0/1:119,36:33:155:0.232:2	0/1:95,19:31:114:0.167:2	0/1:141,32:32:173:0.185:2	0/1:146,28:34:175:0.161:2	0/1:101,19:33:120:0.158:2	0/1:128,36:33:166:0.220:2
chr1	144952641	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,3:31:16:0.188:2	./.	./.	./.	0/1:101,4:34:105:0.038:2	./.	0/1:110,9:33:119:0.076:2	./.	./.
chr1	144952687	rs200038610	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:41,8:32:49:0.163:2	0/1:25,5:31:30:0.167:2	./.	0/1:56,9:32:65:0.138:2	./.	./.	0/1:27,28:32:55:0.509:2	0/1:51,19:32:70:0.271:2	0/1:43,7:33:50:0.140:2	0/1:35,8:31:43:0.186:2	0/1:48,7:32:55:0.127:2
chr1	144955220	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,9:33:197:0.046:2	./.	./.	./.	./.	./.	./.	./.
chr1	144955288	rs139573102	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:173,25:33:198:0.126:2	0/1:149,6:32:155:0.039:2	0/1:36,3:33:39:0.077:2	0/1:171,28:32:200:0.141:2	0/1:141,10:30:151:0.066:2	0/1:184,15:32:199:0.075:2	0/1:152,13:33:165:0.079:2	0/1:186,9:30:195:0.046:2	0/1:176,23:33:199:0.116:2	0/1:182,16:32:198:0.081:2	0/1:181,11:33:192:0.057:2
chr1	144994658	rs1664022	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:112,74:32:186:0.398:2	0/1:92,69:32:162:0.429:2	0/1:24,11:28:35:0.314:2	0/1:102,92:32:194:0.474:2	0/1:105,89:32:195:0.459:2	0/1:103,84:32:187:0.449:2	0/1:115,77:33:192:0.401:2	0/1:127,67:32:194:0.345:2	0/1:105,77:34:182:0.423:2	0/1:100,95:32:195:0.487:2	0/1:113,71:33:184:0.386:2
chr1	144994688	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,26:29:190:0.137:2
chr1	145015874	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,5:33:77:0.065:2	./.
chr1	145015877	rs77741369	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:76,15:31:91:0.165:2	0/1:48,4:31:52:0.077:2	./.	0/1:116,7:31:123:0.057:2	./.	./.	./.	0/1:98,14:31:112:0.125:2	0/1:96,37:32:133:0.278:2	0/1:57,17:31:74:0.230:2	0/1:99,17:30:116:0.147:2
chr1	145021089	rs1613515	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:89,14:33:103:0.136:2	0/1:44,5:31:49:0.102:2	./.	0/1:103,12:33:115:0.104:2	0/1:84,10:32:94:0.106:2	0/1:123,21:32:144:0.146:2	0/1:107,31:32:138:0.225:2	./.	./.	./.	0/1:107,38:32:145:0.262:2
chr1	145039562	rs1663878	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,26:30:62:0.419:2	0/1:23,12:30:35:0.343:2	0/1:8,5:29:13:0.385:2	0/1:58,42:29:100:0.420:2	0/1:92,55:30:147:0.374:2	0/1:75,64:29:141:0.460:2	0/1:78,58:30:137:0.426:2	0/1:88,51:29:139:0.367:2	0/1:49,52:29:101:0.515:2	0/1:61,30:30:92:0.330:2	0/1:47,34:30:82:0.420:2
chr1	145039594	rs111958438	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:132,10:32:142:0.070:2	./.	./.	./.	./.	0/1:94,12:32:106:0.113:2	0/1:105,10:33:115:0.087:2	./.
chr1	145039633	rs2762750	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,7:32:62:0.113:2	0/1:33,5:29:38:0.132:2	0/1:9,3:31:12:0.250:2	0/1:126,10:29:136:0.074:2	./.	./.	0/1:124,13:29:137:0.095:2	0/1:133,30:30:163:0.184:2	0/1:80,21:31:101:0.208:2	0/1:70,14:29:84:0.167:2	0/1:81,17:29:98:0.173:2
chr1	145074975	rs56128713	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,17:33:179:0.095:2	0/1:174,24:33:198:0.121:2	./.	./.	0/1:171,24:33:195:0.123:2
chr1	145075683	rs2762779	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,5:31:15:0.333:2	0/1:6,4:31:10:0.400:2	0/1:1,2:32:3:0.667:2	0/1:22,18:30:40:0.450:2	0/1:11,21:32:32:0.656:2	0/1:11,21:31:32:0.656:2	0/1:9,10:33:19:0.526:2	0/1:16,8:30:24:0.333:2	0/1:13,14:31:27:0.519:2	0/1:16,8:27:24:0.333:2	0/1:6,3:32:9:0.333:2
chr1	145075775	rs76199660	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,6:32:13:0.462:2
chr1	145075854	rs1663853	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,13:29:39:0.333:2	0/1:17,6:33:23:0.261:2	0/1:5,4:32:9:0.444:2	0/1:29,37:31:67:0.561:2	0/1:44,24:31:68:0.353:2	0/1:24,36:31:60:0.600:2	0/1:35,17:32:52:0.327:2	0/1:35,23:31:58:0.397:2	0/1:18,15:30:33:0.455:2	0/1:24,15:30:39:0.385:2	0/1:17,12:32:29:0.414:2
chr1	145103928	rs2596251	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:114,11:32:125:0.088:2	0/1:63,5:32:68:0.074:2	0/1:9,4:31:13:0.308:2	0/1:117,42:31:159:0.264:2	0/1:101,13:31:114:0.114:2	0/1:131,10:30:141:0.071:2	0/1:86,25:32:111:0.225:2	0/1:171,19:32:190:0.100:2	0/1:108,25:32:133:0.188:2	0/1:101,32:32:133:0.241:2	0/1:150,17:32:167:0.102:2
chr1	145103947	rs2794062	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:93,26:33:119:0.218:2	0/1:53,13:32:66:0.197:2	0/1:14,4:33:18:0.222:2	0/1:112,42:32:154:0.273:2	0/1:76,29:32:105:0.276:2	0/1:94,39:32:133:0.293:2	0/1:76,44:32:120:0.367:2	0/1:143,33:33:176:0.188:2	0/1:108,21:33:129:0.163:2	0/1:100,29:33:129:0.225:2	0/1:117,47:33:164:0.287:2
chr1	145109549	rs2596331	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:171,22:30:193:0.114:2	0/1:103,23:32:126:0.183:2	0/1:22,7:31:29:0.241:2	0/1:162,33:30:196:0.169:2	0/1:170,28:28:198:0.141:2	0/1:179,18:29:197:0.091:2	0/1:174,25:29:199:0.126:2	0/1:175,24:30:199:0.121:2	0/1:156,37:31:193:0.192:2	0/1:167,29:30:196:0.148:2	0/1:153,32:31:185:0.173:2
chr1	145109583	rs2794053	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:115,78:33:193:0.404:2	0/1:96,70:32:166:0.422:2	0/1:15,18:32:33:0.545:2	0/1:115,72:33:187:0.385:2	0/1:128,70:31:199:0.354:2	0/1:120,75:32:196:0.385:2	0/1:123,71:32:194:0.366:2	0/1:128,61:33:189:0.323:2	0/1:123,65:33:188:0.346:2	0/1:115,73:33:188:0.388:2	0/1:105,78:32:183:0.426:2
chr1	145109596	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,5:32:31:0.161:2	./.	./.	./.	0/1:161,27:32:188:0.144:2	./.	./.	./.	./.
chr1	145109661	rs2655551	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:159,30:31:189:0.159:2	0/1:119,26:32:145:0.179:2	0/1:19,7:30:26:0.269:2	0/1:144,50:31:194:0.258:2	0/1:130,32:31:162:0.198:2	0/1:162,31:30:193:0.161:2	0/1:162,29:31:193:0.152:2	0/1:149,43:31:192:0.224:2	0/1:148,44:31:192:0.229:2	0/1:140,35:32:175:0.200:2	0/1:148,39:31:187:0.209:2
chr1	145112414	rs2590131	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:127,26:32:153:0.170:2	0/1:53,21:30:74:0.284:2	0/1:20,8:31:28:0.286:2	0/1:121,34:30:155:0.219:2	0/1:86,22:29:108:0.204:2	0/1:132,44:29:176:0.250:2	0/1:119,22:30:141:0.156:2	0/1:136,52:30:188:0.277:2	0/1:127,20:30:147:0.136:2	0/1:98,41:30:139:0.295:2	0/1:146,41:29:188:0.219:2
chr1	145112420	rs2794041	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:115,30:32:145:0.207:2	0/1:57,13:32:70:0.186:2	0/1:24,4:31:28:0.143:2	0/1:124,31:32:155:0.200:2	0/1:88,27:31:115:0.235:2	0/1:144,38:31:183:0.209:2	0/1:105,28:32:133:0.211:2	0/1:154,30:32:184:0.163:2	0/1:104,41:32:145:0.283:2	0/1:116,25:32:141:0.177:2	0/1:162,29:32:191:0.152:2
chr1	145112428	rs2794040	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:123,22:32:145:0.152:2	0/1:59,18:31:77:0.234:2	0/1:18,7:31:25:0.280:2	0/1:121,33:31:154:0.214:2	0/1:95,25:30:120:0.208:2	0/1:143,42:31:185:0.227:2	0/1:120,22:32:142:0.155:2	0/1:141,48:31:189:0.254:2	0/1:140,22:31:162:0.136:2	0/1:107,44:31:151:0.291:2	0/1:144,38:32:182:0.209:2
chr1	145112468	rs200742331	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:132,13:33:145:0.090:2	./.	0/1:182,10:34:192:0.052:2	./.	./.	./.	./.
chr1	145112485	rs2794039	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:126,28:32:154:0.182:2	0/1:70,18:32:88:0.205:2	0/1:24,7:31:31:0.226:2	0/1:142,40:31:182:0.220:2	0/1:108,33:32:141:0.234:2	0/1:153,31:31:184:0.168:2	0/1:161,32:32:194:0.166:2	0/1:145,44:32:189:0.233:2	0/1:155,34:33:189:0.180:2	0/1:121,40:33:161:0.248:2	0/1:142,24:33:166:0.145:2
chr1	145112501	rs3871984	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,14:33:142:0.099:2	0/1:73,6:31:79:0.076:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	145115792	rs201239485	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:172,22:31:194:0.113:2	./.	./.	./.	./.	./.	./.	./.
chr1	145115810	rs2655557	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:100,99:29:199:0.497:2	0/1:66,67:28:133:0.504:2	0/1:13,10:30:23:0.435:2	0/1:112,85:29:197:0.431:2	0/1:106,92:28:198:0.465:2	0/1:100,94:29:194:0.485:2	0/1:116,78:28:194:0.402:2	0/1:97,95:29:192:0.495:2	0/1:105,93:29:198:0.470:2	0/1:112,84:29:196:0.429:2	0/1:111,79:29:190:0.416:2
chr1	145115820	rs2655558	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:142,53:30:195:0.272:2	0/1:112,32:30:144:0.222:2	0/1:24,5:31:29:0.172:2	0/1:152,42:31:194:0.216:2	0/1:161,36:30:197:0.183:2	0/1:149,48:30:197:0.244:2	0/1:160,38:31:198:0.192:2	0/1:152,41:30:194:0.212:2	0/1:156,40:32:196:0.204:2	0/1:148,50:30:198:0.253:2	0/1:145,44:31:189:0.233:2
chr1	145115883	rs7534444	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,5:31:29:0.172:2	./.	./.	./.	0/1:152,10:30:162:0.062:2	./.	0/1:175,9:33:184:0.049:2	./.	./.
chr1	145248851	rs201970415	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:181,13:32:194:0.067:2	0/1:182,13:32:195:0.067:2	0/1:184,16:30:200:0.080:2	0/1:176,20:31:196:0.102:2	0/1:188,11:31:199:0.055:2	0/1:175,25:31:200:0.125:2	0/1:176,21:32:197:0.107:2	0/1:189,6:31:195:0.031:2	0/1:181,13:32:194:0.067:2	0/1:185,8:31:193:0.041:2	0/1:182,12:32:194:0.062:2
chr1	145248876	rs200866084	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:184,14:34:198:0.071:2	0/1:180,15:33:196:0.077:2	0/1:181,18:33:199:0.090:2	0/1:164,32:32:196:0.163:2	0/1:175,23:33:198:0.116:2	0/1:160,35:33:195:0.179:2	0/1:168,28:35:196:0.143:2	0/1:189,8:31:197:0.041:2	0/1:177,18:34:195:0.092:2	0/1:181,15:33:196:0.077:2	0/1:183,14:34:197:0.071:2
chr1	145273302	rs201646101	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:166,24:33:190:0.126:2	0/1:175,23:31:198:0.116:2	0/1:143,25:33:169:0.149:2	0/1:160,32:33:192:0.167:2	0/1:176,15:31:191:0.079:2	0/1:165,30:32:195:0.154:2	0/1:179,15:31:194:0.077:2	0/1:184,15:32:199:0.075:2	0/1:168,23:33:191:0.120:2	0/1:185,10:33:195:0.051:2	0/1:168,20:31:188:0.106:2
chr1	145273345	rs75987820	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:169,15:33:184:0.082:2	0/1:165,29:31:194:0.149:2	0/1:164,31:32:195:0.159:2	0/1:164,31:32:195:0.159:2	0/1:170,24:32:194:0.124:2	0/1:154,39:31:193:0.202:2	0/1:162,30:33:192:0.156:2	0/1:183,13:31:196:0.066:2	0/1:167,23:34:190:0.121:2	0/1:179,13:33:192:0.068:2	0/1:178,15:33:194:0.078:2
chr1	145273366	rs140871032	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:173,18:31:191:0.094:2	./.	./.	./.	0/1:172,22:33:194:0.113:2	./.	./.
chr1	145273371	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,7:33:194:0.036:2	./.	./.	./.	./.
chr1	145273431	rs17421312	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,59:33:194:0.304:2	0/1:173,20:34:193:0.104:2	0/1:177,21:33:198:0.106:2	./.	./.	0/1:163,27:32:190:0.142:2
chr1	145281408	rs201164506	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:174,21:33:195:0.108:2	0/1:173,21:33:194:0.108:2	0/1:110,16:32:126:0.127:2	0/1:157,41:33:198:0.207:2	0/1:166,30:33:196:0.153:2	0/1:159,40:32:199:0.201:2	0/1:156,38:32:195:0.196:2	0/1:175,21:33:196:0.107:2	0/1:168,29:34:197:0.147:2	0/1:172,25:33:198:0.127:2	0/1:177,19:32:196:0.097:2
chr1	145281543	rs8002	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:125,55:30:180:0.306:2	0/1:141,46:31:187:0.246:2	0/1:112,41:30:153:0.268:2	0/1:145,25:30:170:0.147:2	0/1:153,25:31:178:0.140:2	0/1:143,38:30:181:0.210:2	0/1:138,39:31:177:0.220:2	0/1:138,52:31:190:0.274:2	0/1:156,16:30:172:0.093:2	0/1:136,44:31:180:0.244:2	0/1:131,43:30:174:0.247:2
chr1	145281613	rs12120756	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:170,17:31:187:0.091:2	0/1:164,27:31:191:0.141:2	0/1:111,11:31:122:0.090:2	0/1:159,34:31:193:0.176:2	0/1:179,18:31:197:0.091:2	0/1:158,38:31:196:0.194:2	0/1:164,30:32:194:0.155:2	0/1:185,13:32:198:0.066:2	0/1:147,33:32:180:0.183:2	0/1:175,16:31:191:0.084:2	0/1:167,26:32:193:0.135:2
chr1	145281633	rs28576333	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:170,21:28:191:0.110:2	0/1:160,28:31:188:0.149:2	0/1:108,12:31:121:0.100:2	0/1:161,31:30:192:0.161:2	0/1:168,27:30:195:0.138:2	0/1:146,39:30:185:0.211:2	0/1:142,47:31:189:0.249:2	0/1:177,17:32:194:0.088:2	0/1:145,37:30:182:0.203:2	0/1:172,15:29:187:0.080:2	0/1:157,26:32:184:0.142:2
chr1	145281637	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,10:31:193:0.052:2	./.
chr1	145281656	rs4649852	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:166,22:31:188:0.117:2	0/1:163,30:32:193:0.155:2	0/1:99,12:31:111:0.108:2	0/1:155,41:31:197:0.209:2	0/1:167,28:31:195:0.144:2	0/1:159,39:32:198:0.197:2	0/1:171,24:33:196:0.123:2	0/1:185,14:32:199:0.070:2	0/1:140,43:33:183:0.235:2	0/1:165,25:32:192:0.132:2	./.
chr1	145290409	rs77693292	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:159,8:32:167:0.048:2	0/1:172,10:32:182:0.055:2	0/1:64,5:29:69:0.072:2	0/1:164,12:31:176:0.068:2	0/1:176,7:33:183:0.038:2	0/1:170,6:31:176:0.034:2	./.	0/1:172,5:31:178:0.028:2	0/1:161,9:32:170:0.053:2	0/1:167,10:30:177:0.056:2	0/1:162,12:33:174:0.069:2
chr1	145290498	rs76101707	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:156,28:30:185:0.152:2	0/1:156,31:30:187:0.166:2	0/1:52,10:30:62:0.161:2	0/1:152,30:30:182:0.165:2	0/1:158,26:29:184:0.141:2	0/1:163,28:30:191:0.147:2	0/1:162,27:29:189:0.143:2	0/1:154,28:29:182:0.154:2	0/1:162,24:31:186:0.129:2	0/1:155,25:29:180:0.139:2	0/1:167,18:31:185:0.097:2
chr1	145298168	rs28610541	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:191,7:30:198:0.035:2	0/1:191,6:31:197:0.030:2	./.	0/1:191,7:31:198:0.035:2	0/1:186,9:29:196:0.046:2	./.	0/1:190,4:32:194:0.021:2	./.	0/1:190,7:33:197:0.036:2	0/1:187,7:32:195:0.036:2	./.
chr1	145298176	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,5:32:197:0.025:2	./.	./.	./.	./.	./.	./.
chr1	145298180	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:192,6:27:198:0.030:2	./.	0/1:192,7:29:199:0.035:2	./.	./.	./.	./.	0/1:192,6:28:198:0.030:2	./.	./.
chr1	145298186	rs28507779	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:147,44:26:191:0.230:2	0/1:148,50:27:198:0.253:2	0/1:62,13:29:75:0.173:2	0/1:150,47:27:197:0.239:2	0/1:141,55:28:196:0.281:2	0/1:172,27:27:199:0.136:2	0/1:149,41:27:191:0.216:2	0/1:137,56:29:194:0.290:2	0/1:159,36:28:197:0.185:2	0/1:175,19:25:194:0.098:2	0/1:127,63:26:190:0.332:2
chr1	145298241	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,10:32:198:0.051:2	./.	./.	./.
chr1	145298281	rs201797121	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:177,14:31:191:0.073:2	0/1:174,23:29:197:0.117:2	0/1:177,19:30:197:0.097:2	./.	./.	./.	0/1:182,15:29:197:0.076:2	0/1:186,9:31:195:0.046:2	./.	0/1:184,11:29:195:0.056:2	0/1:181,12:29:193:0.062:2
chr1	145298349	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:169,23:33:192:0.120:2	0/1:182,14:32:196:0.071:2	0/1:99,14:31:113:0.124:2	0/1:180,19:31:199:0.095:2	0/1:168,31:31:199:0.156:2	0/1:160,31:32:191:0.162:2	0/1:173,19:32:192:0.099:2	0/1:177,20:32:197:0.102:2	0/1:164,27:33:191:0.141:2	0/1:177,17:32:194:0.088:2	./.
chr1	145298363	rs200081155	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:176,17:31:193:0.088:2	0/1:177,9:32:186:0.048:2	0/1:76,6:31:82:0.073:2	./.	./.	./.	0/1:174,22:31:196:0.112:2	0/1:182,18:31:200:0.090:2	./.	0/1:182,12:31:194:0.062:2	0/1:180,13:32:193:0.067:2
chr1	145311785	rs61816394	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:16,6:33:22:0.273:2	./.	./.	0/1:23,9:33:32:0.281:2	./.	0/1:0,9:32:9:1.00:2	0/1:20,3:33:23:0.130:2	0/1:27,4:32:32:0.129:2	0/1:0,6:34:6:1.00:2	0/1:0,12:31:12:1.00:2	./.
chr1	145311828	rs12135693	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:33:46:1.00:2	0/1:0,22:33:22:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,58:33:58:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,54:33:54:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,88:32:88:1.00:2
chr1	145311839	rs58277049	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,4:31:37:0.108:2	./.	0/1:63,5:33:68:0.074:2	./.	./.	./.	./.
chr1	145311869	rs184819447	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,5:29:47:0.106:2	./.	./.	./.	./.	./.	./.
chr1	145311931	rs200450624	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,12:32:81:0.148:2	./.	./.	0/1:35,5:33:40:0.125:2	0/1:48,4:31:52:0.077:2	./.	./.	./.
chr1	145416938	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,5:29:121:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr1	145417510	rs371123300	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,60:32:128:0.469:2	./.
chr1	145440096	rs6674773	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,12:32:28:0.429:2	./.
chr1	145475095	rs116099529	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,87:31:171:0.509:2	./.	./.	./.	./.	./.
chr1	145475172	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:33:166:0.024:2	./.	./.
chr1	145475255	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:111,4:32:115:0.035:2	./.	./.	./.	./.	./.	./.
chr1	145475529	rs41302089	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,41:30:78:0.532:2	./.	./.	./.	./.	./.	./.
chr1	145508010	rs112273321	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,15:33:54:0.278:2	./.	./.	./.	./.	./.
chr1	145509217	rs12079762	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,19:33:34:0.559:2	./.
chr1	145509864	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:149,49:32:198:0.247:2	0/1:89,28:32:117:0.239:2	./.	0/1:149,49:32:198:0.247:2	0/1:91,61:32:152:0.401:2	./.	./.	./.	./.	0/1:150,49:32:200:0.246:2	./.
chr1	145510041	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,17:34:73:0.233:2	./.	./.
chr1	145510063	.	C	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,4:31:38:0.105:2	0/1:14,20:31:34:0.588:2	./.	./.	./.	./.	0/1:38,16:32:54:0.296:2	./.
chr1	145510921	rs71664096	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,57:32:136:0.419:2	./.	./.	./.	./.	./.
chr1	145525139	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:32:126:0.032:2	./.	./.	./.	./.
chr1	145532549	rs1328584	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:33:96:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,13:34:13:1.00:2	0/1:0,125:33:125:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,104:33:104:1.00:2	0/1:0,121:33:121:1.00:2	0/1:0,137:33:137:1.00:2	0/1:0,116:34:116:1.00:2	0/1:0,91:33:91:1.00:2	0/1:0,97:32:97:1.00:2
chr1	145533175	rs11590105	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,29:32:59:0.492:2	./.	0/1:31,30:32:61:0.492:2	0/1:34,18:33:52:0.346:2	./.	0/1:24,17:34:41:0.415:2	0/1:24,19:32:43:0.442:2	./.
chr1	145536082	rs2274616	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,88:32:172:0.512:2	./.	./.	./.	./.	./.	./.
chr1	145541838	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,13:28:132:0.098:2	0/1:72,8:28:80:0.100:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	145542281	rs2282014	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,14:29:30:0.467:2	./.	./.	./.	./.	./.	./.
chr1	145549383	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr1	145558524	rs139514461	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:30:16:0.563:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	145561116	rs11578772	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,15:31:45:0.333:2	0/1:21,19:31:40:0.475:2	./.	0/1:40,44:33:84:0.524:2	0/1:26,40:32:66:0.606:2	./.
chr1	145561314	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:30:126:0.032:2	./.	./.	./.	./.
chr1	145561594	rs6670984	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:26,23:31:49:0.469:2	0/1:14,26:32:40:0.650:2	0/1:6,6:32:12:0.500:2	./.	0/1:1,43:31:44:0.977:2	./.	./.	./.	0/1:24,31:32:55:0.564:2	./.	./.
chr1	145562087	rs41315701	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,8:32:18:0.444:2	0/1:10,4:33:14:0.286:2	0/1:0,4:32:4:1.00:2	0/1:8,3:31:11:0.273:2	./.	0/1:12,6:30:18:0.333:2	./.	0/1:18,7:33:25:0.280:2	./.	./.	0/1:0,18:32:18:1.00:2
chr1	145562293	rs11579366	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,40:31:86:0.465:2	0/1:25,29:32:54:0.537:2	0/1:8,18:32:26:0.692:2	0/1:1,135:32:136:0.993:2	./.	0/1:1,139:31:140:0.993:2	0/1:2,156:32:158:0.987:2	0/1:2,156:31:158:0.987:2	0/1:63,41:33:104:0.394:2	0/1:0,94:32:94:1.00:2	0/1:1,94:31:95:0.989:2
chr1	145562590	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,7:14:30:0.233:2	./.	0/1:28,9:14:37:0.243:2	./.	./.	./.	./.
chr1	145562881	rs10910824	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:31:6:0.500:2	./.	./.	./.	0/1:0,20:32:20:1.00:2	./.	./.	./.	0/1:15,7:32:22:0.318:2	./.	./.
chr1	145596970	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:30:113:0.035:2	./.	./.	./.	./.
chr1	145748341	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,17:32:107:0.159:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	145756605	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,6:26:191:0.031:2	0/1:185,6:33:191:0.031:2	./.	./.	./.	0/1:170,5:33:175:0.029:2	./.	./.
chr1	145763566	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,22:33:179:0.123:2	0/1:123,59:32:183:0.324:2	./.	./.	./.
chr1	145923081	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,63:33:134:0.470:2	0/1:62,65:32:127:0.512:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	146039079	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:32:112:0.036:2	./.	./.	./.
chr1	146039082	.	A	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,4:32:94:0.043:2	0/1:70,4:34:74:0.054:2	0/1:88,5:33:94:0.054:2	0/1:108,4:30:112:0.036:2	./.	./.	0/1:93,5:32:98:0.051:2
chr1	146039093	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:33,4:33:37:0.108:2	./.	./.	./.	0/1:64,4:28:68:0.059:2	0/1:86,5:25:91:0.055:2	./.	./.	./.	0/1:83,5:29:89:0.057:2
chr1	146039099	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,6:32:89:0.067:2	0/1:68,4:32:72:0.056:2	./.	./.	./.	0/1:64,4:34:68:0.059:2	./.	./.
chr1	146039133	rs373735426	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,6:30:77:0.078:2	./.	0/1:40,3:33:43:0.070:2	./.
chr1	146051099	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,5:32:23:0.217:2	./.	./.	./.	0/1:17,8:32:25:0.320:2	./.	./.
chr1	146051100	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,5:33:23:0.217:2	./.	./.	./.	0/1:18,8:32:26:0.308:2	./.	./.
chr1	146051113	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,3:36:24:0.125:2	./.	./.
chr1	146051179	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,3:32:21:0.143:2	./.	./.	./.	./.
chr1	146052567	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:195,4:32:199:0.020:2	./.	./.	./.	./.	./.	./.
chr1	146052615	.	A	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,7:30:196:0.036:2	./.	0/1:182,13:31:197:0.067:2	0/1:189,6:32:195:0.031:2	./.	./.
chr1	146052627	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,14:27:198:0.071:2	0/1:189,6:30:195:0.031:2	./.	./.
chr1	146052668	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,8:32:196:0.041:2	./.	./.	./.
chr1	146052732	.	G	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,6:28:80:0.075:2	./.	./.	0/1:115,8:28:123:0.065:2	0/1:123,10:30:133:0.075:2	./.	0/1:141,12:30:153:0.078:2	0/1:140,4:31:144:0.028:2	0/1:99,6:31:106:0.057:2	0/1:140,8:29:148:0.054:2
chr1	146077140	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,4:30:56:0.071:2	./.	./.	./.	./.	./.	./.	./.
chr1	146077197	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,5:31:47:0.106:2	./.	./.	0/1:48,4:29:52:0.077:2	./.	./.	./.	./.
chr1	146465920	rs200052115	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:72,19:30:91:0.209:2	0/1:46,9:31:55:0.164:2	./.	0/1:86,10:31:96:0.104:2	0/1:71,28:30:99:0.283:2	0/1:111,13:30:124:0.105:2	0/1:83,29:31:112:0.259:2	0/1:104,29:31:133:0.218:2	0/1:104,27:31:131:0.206:2	0/1:50,27:32:77:0.351:2	0/1:113,20:31:133:0.150:2
chr1	146465964	rs192785498	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:89,17:33:106:0.160:2	0/1:50,3:33:53:0.057:2	./.	0/1:112,6:33:118:0.051:2	0/1:66,15:32:81:0.185:2	0/1:106,9:32:115:0.078:2	0/1:65,13:32:78:0.167:2	0/1:115,13:31:128:0.102:2	0/1:140,11:32:151:0.073:2	0/1:55,20:32:75:0.267:2	0/1:115,12:30:127:0.094:2
chr1	146465973	rs184225212	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:99,14:30:113:0.124:2	./.	./.	0/1:113,5:31:118:0.042:2	0/1:72,11:30:83:0.133:2	0/1:116,7:30:123:0.057:2	0/1:66,13:30:79:0.165:2	0/1:126,11:30:137:0.080:2	0/1:149,8:31:157:0.051:2	0/1:58,17:31:75:0.227:2	0/1:132,12:30:144:0.083:2
chr1	146465991	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,58:33:130:0.446:2	./.	./.	./.	./.	./.
chr1	146466083	rs200417581	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:106,7:31:113:0.062:2	0/1:90,5:30:95:0.053:2	./.	./.	./.	0/1:141,4:32:145:0.028:2	./.	./.
chr1	146466085	rs146618112	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:106,7:31:113:0.062:2	0/1:87,5:30:92:0.054:2	./.	./.	./.	0/1:133,4:31:137:0.029:2	./.	0/1:110,4:30:114:0.035:2
chr1	146466091	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,5:31:113:0.044:2
chr1	146672906	rs894469	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,147:32:147:1.00:2	0/1:1,73:31:74:0.986:2	0/1:0,19:32:19:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,110:30:110:1.00:2	0/1:1,115:32:116:0.991:2	0/1:1,120:31:121:0.992:2	0/1:1,117:33:118:0.992:2	0/1:0,114:32:114:1.00:2	0/1:0,158:32:159:1.00:2
chr1	146684095	rs58351438	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,19:32:41:0.463:2	./.	./.	./.	./.	0/1:29,23:31:52:0.442:2
chr1	146714392	rs1890042	G	C,T	.	PASS	AC=4,3;AF=0.190,0.143;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0/1:32:12:1.00:2	0/1:30:7:1.00:2	0/2:30:2:1.00:2	0/2:31:28:1.00:2	0/1:32:7:1.00:2	./.	0/2:29:23:1.00:2	0/1:31:27:1.00:2	./.	./.	./.
chr1	146726552	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:34:128:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	146728149	rs12119390	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:37,50:33:87:0.575:2	0/1:26,29:33:55:0.527:2	0/1:3,7:32:10:0.700:2	./.	./.	./.	./.	0/1:49,36:33:85:0.424:2	./.	0/1:37,38:32:75:0.507:2	./.
chr1	146736092	rs4950315	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:31:7:0.429:2	0/1:3,35:32:38:0.921:2	0/1:25,18:31:43:0.419:2	0/1:25,21:30:46:0.457:2	0/1:0,37:31:37:1.00:2	./.	0/1:30,24:32:54:0.444:2	0/1:23,21:29:44:0.477:2	0/1:31,14:31:45:0.311:2
chr1	146740502	rs17356233	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,11:31:18:0.611:2	0/1:1,105:33:106:0.991:2	0/1:51,32:32:83:0.386:2	0/1:76,50:32:126:0.397:2	0/1:2,113:33:115:0.983:2	./.	0/1:65,63:33:128:0.492:2	0/1:48,41:33:89:0.461:2	0/1:87,69:32:156:0.442:2
chr1	146751782	rs7547279	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:33:79:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,91:33:91:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,82:33:82:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,98:32:98:1.00:2	0/1:0,99:33:99:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,97:31:97:1.00:2
chr1	146766122	rs45563244	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,61:30:130:0.469:2	./.
chr1	146767149	rs4950394	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:32:70:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,86:31:86:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,68:31:68:1.00:2	0/1:0,104:32:104:1.00:2
chr1	147091972	rs3820129	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:33,20:30:54:0.377:2	0/1:19,16:30:35:0.457:2	./.	./.	0/1:0,51:29:51:1.00:2	0/1:27,39:30:66:0.591:2	./.	0/1:2,70:30:72:0.972:2	0/1:38,24:30:62:0.387:2	./.	0/1:35,31:31:66:0.470:2
chr1	147092352	rs200395772	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,8:24:79:0.101:2	0/1:51,6:20:57:0.105:2	0/1:56,8:24:64:0.125:2	0/1:49,13:19:62:0.210:2	0/1:53,12:20:65:0.185:2	0/1:61,7:22:68:0.103:2	0/1:48,7:23:55:0.127:2	0/1:39,8:26:47:0.170:2
chr1	147092702	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,4:31:122:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr1	147096489	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,4:32:41:0.098:2	./.	./.	./.	./.	./.	./.	./.
chr1	147119273	rs1344	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:57,42:32:100:0.424:2	0/1:37,27:31:64:0.422:2	./.	0/1:79,44:31:123:0.358:2	0/1:3,72:32:75:0.960:2	0/1:0,117:31:117:1.00:2	./.	0/1:1,154:32:155:0.994:2	0/1:68,59:32:127:0.465:2	0/1:78,42:31:120:0.350:2	0/1:0,147:32:147:1.00:2
chr1	147121977	rs6593795	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:31:42:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,99:31:99:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,76:33:76:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,78:31:78:1.00:2
chr1	147124310	rs2153463	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,26:30:65:0.400:2	0/1:24,29:28:53:0.547:2	0/1:10,9:30:19:0.474:2	0/1:53,51:30:104:0.490:2	0/1:0,95:30:95:1.00:2	0/1:0,104:30:104:1.00:2	./.	0/1:0,135:29:135:1.00:2	0/1:43,52:30:95:0.547:2	0/1:55,26:31:81:0.321:2	0/1:1,93:30:94:0.989:2
chr1	147131103	rs11800736	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,32:31:70:0.471:2	./.	./.	0/1:41,31:31:72:0.431:2	./.
chr1	147380886	rs3766503	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,6:31:20:0.300:2	./.	./.	./.	./.	./.
chr1	147464787	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,64:33:153:0.418:2	0/1:64,69:32:133:0.519:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	147580791	rs375834644	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,5:30:123:0.041:2	./.	./.	./.
chr1	147580859	rs371954812	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,9:33:126:0.071:2	./.	./.	0/1:125,4:33:129:0.031:2	./.
chr1	147580870	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,8:28:114:0.070:2	./.	./.	./.	./.
chr1	147580876	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,8:30:86:0.093:2	./.	./.	./.	./.	./.	./.
chr1	147592885	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,4:31:28:0.143:2	./.	./.	./.	0/1:21,9:31:30:0.300:2	./.	./.
chr1	147592886	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,4:32:26:0.154:2	./.	./.	./.	0/1:22,9:31:31:0.290:2	./.	./.
chr1	147594401	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,7:30:190:0.037:2	./.	0/1:193,6:31:199:0.030:2	./.	./.	./.
chr1	147594413	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,7:30:196:0.036:2	./.	0/1:192,6:29:198:0.030:2	./.	./.	./.
chr1	147594518	.	G	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:129,7:31:136:0.051:2	./.	./.	./.	0/1:122,7:29:129:0.054:2	./.	0/1:122,8:29:130:0.062:2	0/1:150,19:30:169:0.112:2	0/1:131,11:31:142:0.077:2	./.	0/1:145,8:25:154:0.052:2
chr1	147618679	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.
chr1	147618721	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.
chr1	147618967	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,3:31:31:0.097:2	./.	./.
chr1	147954961	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,3:30:13:0.231:2	./.	./.	./.	./.
chr1	147955126	rs367921294	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,4:26:24:0.167:2	./.	./.	./.	./.	0/1:29,5:25:34:0.147:2	./.	./.	./.	./.	0/1:19,4:28:23:0.174:2
chr1	147955136	rs372484895	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,7:33:33:0.212:2	./.	./.	./.	./.	0/1:35,7:32:42:0.167:2	0/1:11,6:32:17:0.353:2	0/1:17,5:33:22:0.227:2	./.	./.	0/1:23,9:34:32:0.281:2
chr1	147955246	rs202020039	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:159,37:32:196:0.189:2	0/1:90,27:32:117:0.231:2	0/1:10,10:32:20:0.500:2	0/1:171,26:32:197:0.132:2	0/1:164,33:32:197:0.168:2	0/1:170,27:32:197:0.137:2	0/1:157,42:33:199:0.211:2	0/1:131,69:32:200:0.345:2	0/1:166,27:33:194:0.140:2	0/1:137,59:33:197:0.301:2	0/1:87,100:33:187:0.535:2
chr1	147955256	rs199950315	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:150,47:33:197:0.239:2	0/1:101,47:33:148:0.318:2	0/1:15,18:31:33:0.545:2	0/1:140,53:32:193:0.275:2	0/1:140,57:33:197:0.289:2	0/1:151,46:33:197:0.234:2	0/1:140,57:33:197:0.289:2	0/1:108,88:33:196:0.449:2	0/1:139,58:33:197:0.294:2	0/1:140,55:34:195:0.282:2	0/1:78,114:33:193:0.594:2
chr1	147955274	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,5:33:191:0.026:2
chr1	147955329	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,5:31:169:0.030:2
chr1	147955368	rs76383089	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:121,52:29:173:0.301:2	0/1:111,52:30:163:0.319:2	0/1:39,16:30:55:0.291:2	0/1:149,46:32:195:0.236:2	0/1:179,20:31:199:0.101:2	0/1:162,34:30:197:0.173:2	0/1:137,50:30:187:0.267:2	0/1:45,121:30:166:0.729:2	0/1:158,34:31:193:0.177:2	0/1:112,59:30:171:0.345:2	0/1:12,119:30:131:0.908:2
chr1	147955378	rs201998677	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:126,57:30:185:0.311:2	0/1:117,55:30:172:0.320:2	0/1:37,15:29:52:0.288:2	0/1:152,45:29:197:0.228:2	0/1:175,22:32:197:0.112:2	0/1:167,28:30:195:0.144:2	0/1:119,51:31:170:0.300:2	0/1:9,127:30:136:0.934:2	0/1:147,48:31:195:0.246:2	0/1:117,57:30:175:0.328:2	0/1:4,115:30:119:0.966:2
chr1	147955457	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,27:30:166:0.163:2	./.	./.	./.	./.	./.
chr1	147955504	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,12:24:71:0.169:2	./.	./.	./.	./.	./.	./.	./.
chr1	148004548	rs79370452	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:154,4:35:158:0.025:2	./.	0/1:152,6:32:158:0.038:2	./.	0/1:130,4:32:134:0.030:2	./.	./.	./.
chr1	148004567	rs79517418	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,12:30:149:0.081:2	./.	./.	./.
chr1	148004568	rs78765201	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,13:29:150:0.087:2	./.	./.	./.
chr1	148004584	rs78822109	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:107,54:33:161:0.335:2	0/1:127,14:33:141:0.099:2	0/1:27,10:31:37:0.270:2	0/1:129,51:32:180:0.283:2	0/1:144,28:31:172:0.163:2	0/1:131,39:32:170:0.229:2	0/1:144,41:32:185:0.222:2	0/1:112,56:32:168:0.333:2	0/1:125,54:33:179:0.302:2	0/1:135,29:32:164:0.177:2	0/1:96,60:32:156:0.385:2
chr1	148004625	rs144324257	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:107,76:34:185:0.415:2	0/1:117,59:33:176:0.335:2	0/1:39,58:32:97:0.598:2	0/1:152,32:33:185:0.174:2	0/1:156,33:32:189:0.175:2	0/1:144,34:34:178:0.191:2	0/1:154,37:34:191:0.194:2	0/1:161,28:34:189:0.148:2	0/1:150,38:35:188:0.202:2	0/1:125,65:34:190:0.342:2	0/1:105,81:34:186:0.435:2
chr1	148004714	rs201202391	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,8:28:199:0.040:2	./.	./.	./.
chr1	148004732	rs77570381	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:139,13:32:152:0.086:2	0/1:115,9:32:124:0.073:2	./.	0/1:173,16:32:189:0.085:2	0/1:152,17:31:169:0.101:2	0/1:179,8:32:187:0.043:2	0/1:156,18:31:174:0.103:2	0/1:137,30:32:167:0.180:2	0/1:168,20:33:188:0.106:2	0/1:128,18:31:146:0.123:2	0/1:127,23:31:150:0.153:2
chr1	148004733	rs78149412	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:139,9:33:148:0.061:2	0/1:118,7:33:125:0.056:2	./.	0/1:182,13:33:195:0.067:2	0/1:151,17:32:168:0.101:2	0/1:182,7:33:189:0.037:2	0/1:159,18:31:177:0.102:2	0/1:143,25:33:168:0.149:2	0/1:173,18:34:191:0.094:2	0/1:135,18:32:153:0.118:2	0/1:131,20:33:151:0.132:2
chr1	148004749	rs77143638	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:141,5:30:146:0.034:2	./.	./.	./.	./.	./.	./.	0/1:145,6:30:151:0.040:2	./.	./.	./.
chr1	148009344	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr1	148009349	rs141981140	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:169,6:31:175:0.034:2	0/1:106,8:26:114:0.070:2	./.	0/1:188,9:30:197:0.046:2	0/1:181,15:27:196:0.077:2	0/1:184,14:28:198:0.071:2	./.	./.	0/1:179,18:30:197:0.091:2	0/1:182,10:31:193:0.052:2	./.
chr1	148009370	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,8:31:154:0.052:2
chr1	148009371	rs200683178	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:121,74:31:195:0.379:2	0/1:82,46:31:128:0.359:2	0/1:15,16:31:31:0.516:2	0/1:159,32:31:191:0.168:2	0/1:151,43:31:194:0.222:2	0/1:165,29:31:194:0.149:2	0/1:145,52:31:197:0.264:2	0/1:83,107:32:190:0.563:2	0/1:145,45:33:190:0.237:2	0/1:124,65:32:189:0.344:2	0/1:81,71:32:153:0.467:2
chr1	148009375	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,6:30:193:0.031:2	./.	0/1:193,4:35:197:0.020:2	./.	./.
chr1	148009402	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,5:28:179:0.028:2	./.	0/1:196,4:32:200:0.020:2	./.	./.
chr1	148009510	.	G	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,29:30:70:0.414:2	0/1:27,22:31:50:0.449:2	0/1:4,8:31:12:0.667:2	0/1:80,56:31:136:0.412:2	0/1:56,14:31:70:0.200:2	0/1:94,37:31:131:0.282:2	0/1:72,8:31:80:0.100:2	0/1:24,18:29:42:0.429:2	0/1:80,38:31:119:0.322:2	0/1:78,28:30:106:0.264:2	./.
chr1	148009517	rs146731077	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,19:32:38:0.500:2	./.	./.	./.
chr1	148202037	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	./.	0/1:2,5:32:7:0.714:2	./.	./.	./.	./.	./.	0/1:5,3:33:8:0.375:2
chr1	148202135	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,3:33:19:0.158:2	./.	./.	./.	./.	0/1:21,3:32:24:0.125:2	./.	./.	./.	./.	./.
chr1	148202160	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:34,5:30:39:0.128:2	./.	./.	./.	./.	./.	0/1:44,4:28:48:0.083:2	./.	./.	./.	./.
chr1	148202241	rs201764814	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:126,17:31:143:0.119:2	0/1:85,10:31:95:0.105:2	0/1:13,5:31:18:0.278:2	0/1:116,22:31:139:0.159:2	0/1:102,12:31:114:0.105:2	0/1:95,23:30:118:0.195:2	0/1:113,21:32:134:0.157:2	0/1:122,18:32:140:0.129:2	0/1:122,16:33:138:0.116:2	0/1:101,14:32:115:0.122:2	0/1:144,15:32:159:0.094:2
chr1	148202435	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:190,5:34:195:0.026:2	./.	0/1:192,7:32:199:0.035:2	./.	0/1:194,4:36:198:0.020:2	./.	./.
chr1	148202522	rs377474468	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:150,9:31:159:0.057:2	0/1:136,7:30:143:0.049:2	./.	./.	0/1:104,4:30:108:0.037:2	./.	./.	./.	0/1:145,5:31:150:0.033:2	./.	0/1:140,6:31:146:0.041:2
chr1	148251874	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:133,19:32:152:0.125:2	0/1:95,19:32:114:0.167:2	./.	0/1:174,20:32:194:0.103:2	0/1:62,8:34:70:0.114:2	0/1:149,14:32:163:0.086:2	0/1:72,9:29:81:0.111:2	0/1:121,17:32:138:0.123:2	0/1:149,16:30:165:0.097:2	0/1:141,14:32:155:0.090:2	0/1:175,14:30:189:0.074:2
chr1	148251895	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.
chr1	148251927	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:188,5:31:193:0.026:2	./.	./.	./.	0/1:185,5:31:190:0.026:2	./.	./.
chr1	148251971	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,6:30:198:0.030:2	./.	./.	./.	./.	./.
chr1	148251976	.	G	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:188,4:32:192:0.021:2	./.	./.	0/1:190,4:32:195:0.021:2	./.	0/1:192,5:32:197:0.025:2	0/1:187,5:33:192:0.026:2	./.	./.	0/1:193,6:32:199:0.030:2	0/1:190,4:35:195:0.021:2
chr1	148252041	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:31:158:0.025:2	0/1:187,4:33:191:0.021:2	0/1:183,6:28:189:0.032:2	./.	./.	./.
chr1	148252046	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,44:31:180:0.244:2	./.	./.	./.	./.
chr1	148252049	rs201353547	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:120,30:31:150:0.200:2	0/1:115,42:29:157:0.268:2	0/1:39,12:30:51:0.235:2	0/1:138,47:29:185:0.254:2	0/1:138,48:28:186:0.258:2	0/1:117,29:29:146:0.199:2	0/1:114,62:30:176:0.352:2	0/1:126,39:30:165:0.236:2	0/1:131,44:30:176:0.251:2	0/1:126,41:29:167:0.246:2	0/1:118,57:29:175:0.326:2
chr1	148252060	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,5:32:172:0.029:2	./.	./.	./.	./.	./.
chr1	148252105	rs374140805	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,23:32:154:0.149:2	./.	./.	./.
chr1	148252111	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,35:33:126:0.278:2	0/1:68,37:33:105:0.352:2	0/1:12,11:32:23:0.478:2	0/1:111,49:32:160:0.306:2	0/1:61,45:32:106:0.425:2	0/1:80,49:32:130:0.380:2	0/1:61,48:33:109:0.440:2	0/1:94,55:32:149:0.369:2	0/1:104,64:33:168:0.381:2	0/1:98,51:32:149:0.342:2	0/1:123,60:33:184:0.328:2
chr1	148341798	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:190,5:34:195:0.026:2	0/1:189,8:33:197:0.041:2	0/1:91,8:31:99:0.081:2	./.	./.	./.	0/1:186,13:33:199:0.065:2	0/1:188,9:32:197:0.046:2	./.	0/1:183,12:32:195:0.062:2	0/1:184,13:32:197:0.066:2
chr1	148341812	rs202096824	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:170,20:32:190:0.105:2	0/1:181,15:32:196:0.077:2	0/1:119,15:30:134:0.112:2	0/1:177,13:32:190:0.068:2	0/1:171,29:32:200:0.145:2	0/1:178,21:32:199:0.106:2	0/1:175,20:33:195:0.103:2	0/1:175,19:33:194:0.098:2	0/1:166,20:33:186:0.108:2	0/1:177,16:32:193:0.083:2	./.
chr1	148341880	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:191,5:31:196:0.026:2	./.	0/1:157,17:30:174:0.098:2	./.	./.	./.	0/1:182,16:32:198:0.081:2	0/1:188,7:32:195:0.036:2	./.	0/1:179,17:33:196:0.087:2	0/1:172,18:31:190:0.095:2
chr1	148341920	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,18:31:195:0.092:2	./.	./.	./.
chr1	148341975	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,7:25:194:0.036:2
chr1	148341981	rs4659311	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:146,48:27:194:0.247:2	0/1:137,56:27:193:0.290:2	0/1:50,17:28:67:0.254:2	0/1:158,37:28:195:0.190:2	./.	0/1:137,61:28:198:0.308:2	0/1:164,33:29:197:0.168:2	./.	0/1:131,66:29:197:0.335:2	0/1:160,39:29:199:0.196:2	./.
chr1	148594401	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:153,4:32:157:0.025:2	./.	./.	./.	./.	./.	./.	0/1:130,4:31:134:0.030:2	./.	./.	./.
chr1	148594404	rs143187884	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:32:166:0.024:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	148594455	rs1043751	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:178,16:32:194:0.082:2	0/1:171,23:32:194:0.119:2	0/1:36,3:32:39:0.077:2	0/1:192,5:33:197:0.025:2	0/1:176,21:31:197:0.107:2	0/1:190,6:33:196:0.031:2	0/1:181,15:32:196:0.077:2	0/1:190,8:32:198:0.040:2	0/1:185,9:33:194:0.046:2	0/1:179,12:33:191:0.063:2	0/1:184,7:32:191:0.037:2
chr1	148594489	rs138476210	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:178,13:32:191:0.068:2	0/1:168,28:33:196:0.143:2	0/1:74,4:31:78:0.051:2	./.	0/1:179,16:31:195:0.082:2	0/1:186,7:30:193:0.036:2	0/1:185,7:31:192:0.036:2	0/1:186,8:32:194:0.041:2	0/1:187,9:31:196:0.046:2	0/1:180,13:30:193:0.067:2	0/1:188,5:31:193:0.026:2
chr1	148594563	rs146229961	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:172,12:33:184:0.065:2	0/1:176,16:31:192:0.083:2	./.	0/1:177,14:32:191:0.073:2	0/1:179,15:31:194:0.077:2	0/1:181,9:31:190:0.047:2	0/1:182,8:33:190:0.042:2	0/1:190,6:30:196:0.031:2	0/1:178,12:31:191:0.063:2	0/1:176,14:32:190:0.074:2	0/1:176,15:32:191:0.079:2
chr1	148594604	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:170,4:33:174:0.023:2	0/1:139,7:29:146:0.048:2	./.	./.	0/1:121,5:32:126:0.040:2	0/1:181,7:30:188:0.037:2	./.	0/1:169,17:32:186:0.091:2	./.	0/1:148,4:33:152:0.026:2	0/1:167,4:34:171:0.023:2
chr1	148594620	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:31:158:0.025:2	./.	./.	./.
chr1	148594621	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:31:152:0.026:2	./.	./.	./.
chr1	148644306	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:121,8:26:129:0.062:2	0/1:78,6:31:84:0.071:2	0/1:12,4:29:16:0.250:2	0/1:121,32:32:153:0.209:2	0/1:106,14:31:120:0.117:2	0/1:112,31:30:143:0.217:2	0/1:108,25:31:133:0.188:2	0/1:101,32:31:133:0.241:2	0/1:117,25:32:142:0.176:2	0/1:136,27:31:163:0.166:2	0/1:126,20:32:146:0.137:2
chr1	148644387	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,5:30:29:0.172:2	./.	0/1:34,7:30:41:0.171:2	0/1:41,5:27:46:0.109:2	0/1:41,4:29:45:0.089:2	0/1:32,4:32:36:0.111:2	./.	./.
chr1	148644408	rs200516190	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,10:31:39:0.256:2	./.	./.	./.	./.	0/1:14,9:32:23:0.391:2	0/1:13,14:32:27:0.519:2	0/1:17,21:32:38:0.553:2	0/1:17,12:35:29:0.414:2	0/1:18,9:32:27:0.333:2	0/1:24,8:30:32:0.250:2
chr1	148644510	rs374063587	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:33:11:0.364:2	./.	./.	./.	./.
chr1	148756446	rs77353265	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,4:31:106:0.038:2	./.	./.	./.	./.	0/1:169,4:32:173:0.023:2	./.	./.	./.	./.	./.
chr1	148756448	rs201036679	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,55:32:104:0.529:2	0/1:30,39:32:69:0.565:2	0/1:6,11:31:17:0.647:2	0/1:38,65:32:103:0.631:2	0/1:35,34:32:69:0.493:2	0/1:70,107:32:177:0.605:2	0/1:43,26:31:69:0.377:2	0/1:40,33:32:73:0.452:2	0/1:25,41:32:66:0.621:2	0/1:30,43:31:73:0.589:2	0/1:42,72:31:114:0.632:2
chr1	148756450	rs77123384	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,5:31:184:0.027:2	./.	./.	./.	./.	0/1:115,4:32:119:0.034:2
chr1	148756454	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,10:31:80:0.125:2	./.	./.	./.
chr1	148756456	rs200507592	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,16:33:123:0.130:2	0/1:66,9:34:75:0.120:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	148756499	rs201435207	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,97:33:146:0.664:2	0/1:22,63:33:85:0.741:2	0/1:5,14:32:19:0.737:2	0/1:34,105:33:139:0.755:2	0/1:20,56:32:76:0.737:2	0/1:44,135:33:179:0.754:2	0/1:43,61:32:104:0.587:2	0/1:39,84:32:123:0.683:2	0/1:27,96:33:123:0.780:2	0/1:34,93:33:127:0.732:2	0/1:40,99:32:139:0.712:2
chr1	148756515	rs74698828	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,142:29:142:1.00:2	0/1:0,86:30:86:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,145:30:147:1.00:2	0/1:0,69:30:69:1.00:2	0/1:147,36:30:183:0.197:2	0/1:7,99:30:106:0.934:2	0/1:0,127:30:127:1.00:2	0/1:0,124:30:124:1.00:2	0/1:0,134:30:134:1.00:2	0/1:1,132:30:134:0.992:2
chr1	148756518	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:141,17:30:158:0.108:2	0/1:94,10:31:104:0.096:2	0/1:20,3:30:23:0.130:2	0/1:135,22:30:157:0.140:2	0/1:97,7:26:104:0.067:2	0/1:176,10:30:186:0.054:2	0/1:122,18:30:140:0.129:2	0/1:122,18:30:140:0.129:2	0/1:131,10:30:141:0.071:2	0/1:139,18:31:157:0.115:2	0/1:128,19:31:147:0.129:2
chr1	148756607	rs373485062	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:93,82:32:175:0.469:2	0/1:90,81:32:171:0.474:2	0/1:23,27:31:50:0.540:2	0/1:115,70:32:185:0.378:2	0/1:110,75:31:185:0.405:2	0/1:93,68:31:161:0.422:2	0/1:114,60:31:174:0.345:2	0/1:150,38:31:188:0.202:2	0/1:111,65:33:176:0.369:2	0/1:102,83:32:185:0.449:2	0/1:88,98:32:186:0.527:2
chr1	148756648	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:105,15:33:120:0.125:2	0/1:87,6:32:93:0.065:2	0/1:20,6:33:26:0.231:2	0/1:108,11:32:119:0.092:2	./.	0/1:106,12:31:119:0.102:2	0/1:102,8:31:110:0.073:2	0/1:119,27:31:146:0.185:2	0/1:123,14:31:137:0.102:2	0/1:108,12:32:120:0.100:2	0/1:101,6:31:107:0.056:2
chr1	148756664	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,10:31:108:0.093:2	./.	./.	./.
chr1	148756665	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,10:30:107:0.093:2	./.	./.	./.
chr1	149553166	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,61:33:109:0.560:2	0/1:53,76:32:129:0.589:2	0/1:14,18:33:32:0.563:2	0/1:65,25:33:90:0.278:2	0/1:55,27:32:82:0.329:2	0/1:58,27:32:85:0.318:2	0/1:62,26:33:88:0.295:2	0/1:59,36:32:95:0.379:2	0/1:67,25:33:92:0.272:2	0/1:41,53:33:94:0.564:2	0/1:59,39:32:98:0.398:2
chr1	149553176	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,33:33:71:0.465:2	0/1:45,48:32:93:0.516:2	0/1:11,10:32:21:0.476:2	0/1:58,19:33:77:0.247:2	0/1:56,22:32:78:0.282:2	0/1:61,28:32:89:0.315:2	0/1:65,20:33:85:0.235:2	0/1:56,23:32:79:0.291:2	0/1:70,19:33:89:0.213:2	0/1:33,26:33:59:0.441:2	0/1:56,31:32:88:0.356:2
chr1	149553286	.	A	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,7:33:31:0.226:2	0/1:19,7:31:26:0.269:2	./.	0/1:24,4:28:28:0.143:2	0/1:23,6:32:29:0.207:2	0/1:28,8:31:36:0.222:2	0/1:35,6:32:41:0.146:2	0/1:16,6:30:22:0.273:2	0/1:23,8:30:31:0.258:2	0/1:19,4:30:23:0.174:2	0/1:17,11:32:28:0.393:2
chr1	149553296	.	T	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,6:26:24:0.250:2	./.	./.	0/1:23,5:26:28:0.179:2	0/1:27,4:25:31:0.129:2	0/1:36,6:26:42:0.143:2	./.	0/1:22,6:26:28:0.214:2	./.	0/1:15,5:25:20:0.250:2
chr1	149553298	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,4:31:27:0.148:2	./.	0/1:17,3:30:21:0.150:2
chr1	149553732	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.
chr1	149554409	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	./.	./.
chr1	149554711	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:33:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	149554938	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:7,6:32:13:0.462:2	./.	0/1:0,2:31:2:1.00:2	0/1:40,7:32:47:0.149:2	0/1:26,4:31:30:0.133:2	0/1:25,12:31:37:0.324:2	./.	0/1:21,6:32:27:0.222:2	./.	./.	0/1:33,9:32:43:0.214:2
chr1	149555240	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,2:36:5:0.400:2	./.	./.
chr1	149555517	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.
chr1	149555518	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.
chr1	149555888	rs201662775	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,4:31:10:0.400:2	./.	./.	./.	./.	0/1:9,3:32:12:0.250:2
chr1	149555927	rs200117848	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,3:33:4:0.750:2	0/1:2,3:31:5:0.600:2	./.	0/1:18,4:32:22:0.182:2	./.	0/1:17,7:32:24:0.292:2	./.	./.	0/1:10,4:33:14:0.286:2	0/1:11,4:33:15:0.267:2	0/1:10,6:33:16:0.375:2
chr1	149555945	rs201280906	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,4:34:5:0.800:2	0/1:5,4:32:9:0.444:2	./.	0/1:19,4:29:23:0.174:2	0/1:5,3:32:8:0.375:2	0/1:18,8:31:26:0.308:2	./.	./.	0/1:11,5:33:16:0.313:2	0/1:11,4:33:15:0.267:2	0/1:8,6:34:14:0.429:2
chr1	149755621	rs138530098	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,6:32:180:0.034:2
chr1	149755780	rs74315310	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,82:30:198:0.414:2	./.	./.	./.
chr1	149759958	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:31:195:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	149761751	rs201094582	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,75:32:198:0.379:2	./.
chr1	149762918	rs202141131	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:31:165:0.024:2	./.	./.	./.	./.	./.
chr1	149785080	rs200122276	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,5:31:81:0.062:2	./.	./.	./.	./.
chr1	149804940	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,31:32:175:0.177:2	./.	./.	./.	./.	./.
chr1	149812390	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:32:157:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	149813886	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:148,32:31:181:0.178:2	0/1:148,41:30:189:0.217:2	./.	./.	./.	./.	./.	./.	0/1:165,29:30:195:0.149:2	./.	./.
chr1	149814083	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:106,35:32:142:0.248:2	0/1:96,26:32:122:0.213:2	0/1:21,15:31:36:0.417:2	./.	./.	./.	./.	0/1:94,49:32:143:0.343:2	./.	./.	./.
chr1	149822752	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:29:60:0.067:2	./.	./.	./.	./.
chr1	149822863	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:147,35:32:182:0.192:2	0/1:86,32:32:118:0.271:2	0/1:16,21:32:37:0.568:2	./.	./.	./.	./.	0/1:135,57:32:192:0.297:2	./.	./.	./.
chr1	149823060	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:157,33:30:190:0.174:2	0/1:145,47:30:193:0.245:2	./.	./.	./.	./.	./.	./.	0/1:156,41:30:197:0.208:2	./.	./.
chr1	149823080	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,71:31:179:0.397:2	0/1:94,79:31:173:0.457:2	./.	./.	./.	./.	./.	./.	0/1:99,89:31:188:0.473:2	./.	./.
chr1	149824390	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:72,6:32:78:0.077:2	./.	./.	0/1:80,5:27:85:0.059:2	0/1:136,7:32:143:0.049:2	0/1:117,6:32:123:0.049:2	./.	./.	./.	./.	./.
chr1	149824730	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,49:29:193:0.254:2	0/1:115,32:31:147:0.218:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	149824731	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,89:31:189:0.471:2	./.	./.	./.	./.	./.	./.	./.
chr1	149825146	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,5:33:9:0.556:2	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:33:8:0.500:2	./.	./.
chr1	149825493	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:33:181:0.022:2	./.	./.	./.
chr1	149825517	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:74,53:30:127:0.417:2	0/1:38,27:31:65:0.415:2	./.	./.	./.	./.	./.	./.	0/1:94,85:30:179:0.475:2	./.	./.
chr1	149825621	.	C	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:96,86:31:182:0.473:2	0/1:56,33:32:89:0.371:2	./.	./.	./.	./.	./.	0/1:186,6:31:192:0.031:2	0/1:91,104:31:195:0.533:2	./.	./.
chr1	149857816	.	G	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,4:31:58:0.069:2	0/1:38,5:30:43:0.116:2	0/1:34,6:30:40:0.150:2	./.	0/1:60,6:28:66:0.091:2	./.	./.	./.
chr1	149857837	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:31:35:0.114:2
chr1	149857843	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,4:29:27:0.148:2
chr1	149857957	.	A	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:39,5:28:44:0.114:2	./.	0/1:94,6:29:100:0.060:2	./.	./.	0/1:76,5:29:81:0.062:2	./.	0/1:85,6:30:91:0.066:2	./.	0/1:64,4:30:68:0.059:2
chr1	149857992	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:143,4:32:147:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr1	149858213	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,7:32:71:0.099:2	./.	./.
chr1	149858542	rs144294903	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:88,4:31:92:0.043:2	./.	./.	./.	./.	./.	./.	0/1:114,5:32:119:0.042:2	./.	./.	./.
chr1	149858596	rs201558423	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:54,4:34:58:0.069:2	./.	./.	./.	./.	./.	./.	0/1:62,5:33:67:0.075:2	./.	./.	./.
chr1	149858653	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,7:29:30:0.233:2	./.	./.	0/1:21,4:27:25:0.160:2	0/1:24,5:31:29:0.172:2	0/1:34,10:30:44:0.227:2	./.	./.	0/1:16,5:31:21:0.238:2	./.	0/1:12,3:30:15:0.200:2
chr1	149858683	rs111633198	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:61,8:30:69:0.116:2	./.	./.	0/1:113,4:32:117:0.034:2	0/1:129,7:30:136:0.051:2	0/1:118,11:30:129:0.085:2	./.	./.	0/1:87,6:32:93:0.065:2	./.	./.
chr1	149858698	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:85,6:29:91:0.066:2	./.	./.	./.	0/1:178,9:29:188:0.048:2	0/1:168,11:28:179:0.061:2	./.	./.	0/1:118,6:32:124:0.048:2	./.	0/1:84,6:31:90:0.067:2
chr1	149858848	.	T	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:128,7:29:135:0.052:2	0/1:78,6:33:84:0.071:2	./.	./.	./.	./.	0/1:187,7:31:194:0.036:2	0/1:185,8:32:193:0.041:2	0/1:188,4:34:192:0.021:2	./.	0/1:152,7:34:159:0.044:2
chr1	149876665	rs13067	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,93:29:187:0.497:2	./.	./.	./.	./.	./.
chr1	149898292	rs115070660	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,31:32:80:0.388:2	./.	0/1:51,23:33:74:0.311:2
chr1	149899137	rs201447834	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,6:31:78:0.077:2	./.	./.	./.
chr1	149906380	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:32:176:0.023:2	./.	./.	./.	./.	./.
chr1	149906413	rs11205303	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:76,62:28:138:0.449:2	0/1:34,30:27:64:0.469:2	./.	./.	0/1:71,91:28:163:0.562:2	0/1:92,63:28:156:0.406:2	0/1:1,185:30:186:0.995:2	0/1:1,159:29:160:0.994:2	./.	0/1:78,63:30:141:0.447:2	./.
chr1	149907244	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:32:127:0.031:2	./.	./.	./.	./.
chr1	149908108	rs1868992	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:15,10:31:25:0.400:2	0/1:10,18:31:28:0.643:2	./.	0/1:0,42:32:42:1.00:2	./.	./.	./.	./.	0/1:36,33:32:69:0.478:2	./.	0/1:36,24:32:60:0.400:2
chr1	149916098	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,4:30:17:0.235:2	./.
chr1	149916261	rs184817451	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,53:31:90:0.589:2	./.	./.	./.	./.
chr1	149920922	rs192984583	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,28:30:53:0.528:2	./.	./.	./.	./.	./.	./.	./.
chr1	149943079	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:30:69:0.058:2	./.	./.	./.
chr1	150054908	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:32:166:0.024:2	./.	./.
chr1	150116937	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,4:31:53:0.075:2	./.	./.	./.	./.	./.	./.
chr1	150199027	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,5:27:134:0.037:2	./.	./.	./.	./.	./.	./.
chr1	150199042	rs28594165	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,11:26:81:0.136:2	./.	./.	./.	./.	./.	./.
chr1	150199045	rs28460085	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,11:31:79:0.139:2	./.	./.	./.	./.	./.	./.
chr1	150199051	rs374949854	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:104,11:34:115:0.096:2	./.	./.	./.	./.	./.	./.
chr1	150199057	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,4:36:107:0.037:2	./.	./.	./.	./.	./.	./.
chr1	150199123	rs7522034	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,14:30:31:0.452:2	0/1:8,5:31:13:0.385:2	./.	0/1:0,18:31:18:1.00:2	0/1:14,10:30:24:0.417:2	0/1:13,7:32:20:0.350:2	0/1:12,11:32:23:0.478:2	0/1:16,13:31:29:0.448:2	./.	0/1:14,9:31:23:0.391:2	0/1:0,27:31:28:1.00:2
chr1	150234657	rs34714364	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.	0/1:22,37:30:59:0.627:2	./.	./.	./.	0/1:0,63:31:63:1.00:2	./.	./.
chr1	150239849	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:32:72:0.056:2	./.	./.	./.	./.
chr1	150280550	rs4845	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,63:32:118:0.534:2	./.	./.	./.
chr1	150280621	rs144788909	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,32:31:71:0.451:2	./.	./.	./.	./.	./.
chr1	150310716	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:32:173:0.023:2	./.	./.	./.
chr1	150310727	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:33:187:0.021:2	./.	./.	./.
chr1	150310752	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:32:196:0.021:2	./.	./.	./.
chr1	150312947	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,6:34:26:0.231:2	./.	./.	./.	./.
chr1	150337289	rs72696841	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:31:10:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	150416748	rs200294305	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,16:32:27:0.593:2	./.
chr1	150429944	rs41273537	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:29:13:0.308:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	150443698	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:30:97:0.041:2	./.	./.	./.	./.	./.
chr1	150444597	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,29:31:48:0.604:2	./.	./.	./.	./.	./.	./.	./.
chr1	150445276	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:33:102:0.039:2	./.	./.
chr1	150481982	rs75772057	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,30:32:42:0.714:2	./.	./.	./.	./.	./.
chr1	150483355	rs3737240	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,43:32:43:1.00:2	0/1:0,30:31:30:1.00:2	0/1:6,4:32:10:0.400:2	./.	0/1:51,29:31:80:0.363:2	0/1:59,30:31:89:0.337:2	./.	./.	0/1:0,57:31:57:1.00:2	./.	./.
chr1	150484004	rs11801190	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,48:30:90:0.533:2	./.	./.	./.
chr1	150484273	rs149844916	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:163,4:35:167:0.024:2	./.	./.	./.	./.	./.	./.
chr1	150484987	rs13294	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,62:33:62:1.00:2	0/1:2,36:33:38:0.947:2	0/1:5,3:33:8:0.375:2	./.	0/1:55,41:32:96:0.427:2	0/1:38,35:32:73:0.479:2	./.	./.	0/1:0,87:33:87:1.00:2	./.	./.
chr1	150524786	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,13:16:126:0.103:2	./.
chr1	150525425	rs41317513	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,6:31:15:0.400:2
chr1	150526044	rs41317515	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,42:31:43:0.977:2	0/1:0,25:32:25:1.00:2	0/1:0,10:32:10:1.00:2	./.	0/1:0,67:32:67:1.00:2	./.	0/1:2,85:32:87:0.977:2	0/1:3,59:31:62:0.952:2	0/1:0,68:33:68:1.00:2	0/1:27,35:32:62:0.565:2	./.
chr1	150526406	rs6681639	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:31:11:1.00:2	./.	0/1:28,27:30:55:0.491:2	./.	./.	./.	0/1:21,26:31:47:0.553:2	./.	./.
chr1	150531008	rs10888382	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:30:40:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,4:27:4:1.00:2	0/1:0,64:29:64:1.00:2	0/1:0,56:30:56:1.00:2	0/1:0,54:29:55:1.00:2	0/1:0,58:29:58:1.00:2	0/1:0,72:29:72:1.00:2	0/1:0,62:30:62:1.00:2	0/1:27,34:29:61:0.557:2	0/1:0,35:29:35:1.00:2
chr1	150531050	rs10749657	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:30:42:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,61:29:61:1.00:2	0/1:32,30:31:62:0.484:2	0/1:0,47:30:48:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,49:31:49:1.00:2	0/1:19,20:29:39:0.513:2	0/1:0,33:28:33:1.00:2
chr1	150531160	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,9:29:27:0.333:2	./.	./.	./.
chr1	150531170	rs10749658	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:31:16:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,18:32:18:1.00:2
chr1	150531905	rs150225445	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,35:32:64:0.547:2	./.	./.
chr1	150532583	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:30:89:0.045:2	./.
chr1	150534368	rs12116492	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,17:28:19:0.895:2	./.	0/1:3,122:29:125:0.976:2	./.	0/1:7,120:29:127:0.945:2	0/1:2,164:29:166:0.988:2	0/1:0,127:30:127:1.00:2	0/1:63,51:30:114:0.447:2	./.
chr1	150550718	rs74848639	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,7:19:99:0.071:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	150621165	rs186291546	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,86:33:182:0.473:2
chr1	150679033	rs1336900	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,49:31:50:0.980:2	0/1:0,25:31:25:1.00:2	./.	0/1:0,37:30:37:1.00:2	./.	0/1:1,39:29:40:0.975:2	./.	./.	./.	0/1:13,21:31:34:0.618:2	0/1:34,29:31:63:0.460:2
chr1	150720261	rs140408537	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,68:31:153:0.444:2	./.	./.
chr1	150727539	rs2230061	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:3,91:32:94:0.968:2	0/1:2,49:32:51:0.961:2	./.	0/1:2,108:32:110:0.982:2	./.	0/1:0,99:31:99:1.00:2	./.	./.	./.	0/1:33,44:31:77:0.571:2	0/1:57,50:32:108:0.467:2
chr1	150771703	rs10788796	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,97:29:97:1.00:2	0/1:0,72:29:72:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,132:29:132:1.00:2	0/1:0,102:29:102:1.00:2	0/1:0,122:29:122:1.00:2	0/1:0,90:29:90:1.00:2	0/1:0,127:29:127:1.00:2	0/1:0,156:30:156:1.00:2	0/1:0,102:30:102:1.00:2	0/1:0,153:29:153:1.00:2
chr1	150779755	rs6587522	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,113:32:113:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,150:32:150:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,108:32:108:1.00:2	0/1:3,74:32:77:0.961:2	0/1:0,106:32:106:1.00:2	0/1:0,130:33:130:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,136:32:136:1.00:2
chr1	150779845	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:197:0.020:2	./.
chr1	150788792	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,4:32:30:0.133:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	150807020	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:32:165:0.024:2	./.	./.
chr1	150808889	rs2228099	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,51:31:51:1.00:2	0/1:2,37:33:39:0.949:2	./.	0/1:0,78:32:78:1.00:2	./.	0/1:0,96:32:96:1.00:2	./.	./.	./.	0/1:35,33:32:68:0.485:2	0/1:52,33:33:85:0.388:2
chr1	150917624	rs186820437	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,60:31:104:0.577:2	./.	./.	./.	./.	./.
chr1	150923099	rs17661357	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,17:32:27:0.630:2	./.
chr1	150939910	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:31:126:0.032:2	./.	./.	./.	./.
chr1	150940357	rs371338966	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,44:31:45:0.978:2	0/1:2,38:31:40:0.950:2	./.	0/1:0,53:31:53:1.00:2	./.	0/1:0,50:31:50:1.00:2	./.	./.	./.	0/1:32,24:32:56:0.429:2	0/1:28,21:32:49:0.429:2
chr1	150940358	rs59988025	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,44:30:45:0.978:2	0/1:2,38:31:40:0.950:2	./.	0/1:0,53:29:53:1.00:2	./.	0/1:0,50:30:50:1.00:2	./.	./.	./.	0/1:31,24:31:55:0.436:2	0/1:28,21:31:49:0.429:2
chr1	150940622	rs185209926	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,16:31:35:0.457:2	./.	./.	./.
chr1	150940625	rs267738	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,9:29:25:0.360:2	./.	./.	./.	0/1:17,9:27:26:0.346:2	./.	./.
chr1	150955582	rs267731	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,29:29:58:0.500:2	./.	./.
chr1	150958836	rs267733	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,26:31:65:0.400:2	./.	./.	./.	0/1:34,45:33:79:0.570:2	./.	./.
chr1	150960350	rs17850000	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,40:32:73:0.548:2	./.	./.	0/1:44,36:33:80:0.450:2	0/1:0,59:32:59:1.00:2	0/1:47,25:32:72:0.347:2
chr1	150970577	rs2925741	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:33:23:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,23:32:23:1.00:2
chr1	150974971	rs41310885	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	150975095	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:32:90:0.044:2	./.	./.
chr1	150975108	rs771205	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:30:54:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,13:30:13:1.00:2	0/1:1,90:29:91:0.989:2	0/1:1,47:29:48:0.979:2	0/1:0,68:29:68:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,99:30:99:1.00:2	0/1:1,92:31:93:0.989:2	0/1:0,47:30:48:1.00:2	0/1:0,90:31:90:1.00:2
chr1	150999737	rs11204762	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,75:33:167:0.449:2	./.	./.	./.
chr1	151006539	rs3738476	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,113:31:113:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,20:31:20:1.00:2	0/1:3,122:31:125:0.976:2	0/1:1,142:31:143:0.993:2	0/1:1,151:30:152:0.993:2	0/1:103,71:31:174:0.408:2	0/1:93,65:30:158:0.411:2	0/1:107,78:32:185:0.422:2	0/1:72,63:31:135:0.467:2	0/1:85,69:31:154:0.448:2
chr1	151015564	rs61751620	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,86:32:172:0.500:2	./.	./.
chr1	151019180	rs6587553	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,68:33:69:0.986:2	0/1:0,32:32:32:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,70:33:70:1.00:2	0/1:49,31:33:80:0.388:2	0/1:46,51:33:97:0.526:2	./.	0/1:38,31:32:69:0.449:2	0/1:0,77:33:77:1.00:2
chr1	151020761	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:30:104:0.038:2	./.	./.	./.	./.
chr1	151040435	rs15740	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,54:32:54:1.00:2	0/1:25,20:32:45:0.444:2	0/1:30,18:32:48:0.375:2	./.	0/1:26,12:32:38:0.316:2	0/1:0,48:32:48:1.00:2
chr1	151105824	rs4971006	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,4:29:4:1.00:2	0/1:0,5:28:5:1.00:2	./.	0/1:0,13:28:13:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,10:27:10:1.00:2	0/1:0,6:30:6:1.00:2	./.	./.	./.	./.
chr1	151105898	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,4:30:13:0.308:2	./.	./.
chr1	151108137	rs4971007	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:31:94:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,12:32:12:1.00:2	0/1:1,139:31:141:0.993:2	0/1:1,134:32:135:0.993:2	0/1:0,102:32:103:1.00:2	0/1:99,67:32:166:0.404:2	0/1:104,83:32:187:0.444:2	./.	0/1:53,56:33:109:0.514:2	0/1:0,101:32:101:1.00:2
chr1	151110832	rs72708441	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,95:31:193:0.492:2	./.	0/1:112,80:32:192:0.417:2	0/1:98,96:31:194:0.495:2	./.	./.	0/1:61,62:30:123:0.504:2
chr1	151115017	rs74949844	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,15:32:35:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	151144239	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:31:89:0.045:2	./.
chr1	151199860	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,4:35:44:0.093:2	./.	./.	./.	./.	./.	./.	./.
chr1	151204766	rs148997378	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,30:33:74:0.405:2
chr1	151205086	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:31:169:0.024:2	./.	./.	./.
chr1	151206786	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,5:31:173:0.029:2	./.	./.	./.	./.	./.
chr1	151206789	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,5:32:176:0.028:2	./.	./.	./.	./.	./.
chr1	151206931	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,5:30:112:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	151206932	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:28:65:0.062:2	./.	./.	./.	./.
chr1	151206934	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,5:29:112:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	151206939	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:32:55:0.073:2	./.	./.	./.	./.
chr1	151209063	rs12407426	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:30:5:1.00:2	0/1:79,4:31:83:0.048:2	0/1:3,69:31:72:0.958:2	0/1:48,50:31:98:0.510:2	0/1:0,59:31:59:1.00:2	0/1:1,67:31:68:0.985:2	./.	0/1:1,68:31:69:0.986:2	0/1:47,55:31:103:0.539:2
chr1	151209120	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,4:31:100:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr1	151215011	rs61729862	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,30:32:62:0.484:2	./.	./.	./.	./.	./.
chr1	151234714	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,5:31:150:0.033:2	./.	./.	./.	./.
chr1	151237929	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:178,4:33:182:0.022:2	./.	0/1:190,5:28:195:0.026:2	./.	./.	./.	./.	./.
chr1	151238020	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:176,4:33:182:0.022:2	./.	./.	./.	./.	./.	./.
chr1	151239051	rs7489	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:28:6:1.00:2	./.	0/1:2,84:28:86:0.977:2	0/1:31,31:28:62:0.500:2	0/1:0,62:28:62:1.00:2	0/1:1,84:28:85:0.988:2	./.	0/1:1,52:28:54:0.981:2	0/1:44,24:27:68:0.353:2
chr1	151239751	rs201794751	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,4:32:192:0.021:2	./.	0/1:186,7:31:193:0.036:2	./.	0/1:182,14:32:196:0.071:2	0/1:182,8:30:190:0.042:2	0/1:186,11:33:197:0.056:2	0/1:177,8:31:185:0.043:2
chr1	151239784	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:186,6:31:192:0.031:2	./.	./.	./.	./.	./.	./.
chr1	151254023	rs59912932	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,11:31:25:0.440:2	0/1:10,3:31:13:0.231:2	./.	./.	./.	./.	./.	./.	0/1:0,23:30:23:1.00:2	./.	./.
chr1	151254036	rs11587537	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,14:31:27:0.519:2	./.
chr1	151254041	rs3811406	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:17,13:28:30:0.433:2	0/1:11,7:31:18:0.389:2	0/1:0,2:27:2:1.00:2	./.	0/1:0,55:30:55:1.00:2	0/1:19,27:30:46:0.587:2	0/1:34,11:28:45:0.244:2	0/1:34,28:30:62:0.452:2	0/1:0,30:29:30:1.00:2	0/1:0,29:31:29:1.00:2	./.
chr1	151259043	rs2298265	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,11:32:22:0.500:2	0/1:5,8:31:13:0.615:2	./.	./.	./.	./.	./.	./.	0/1:0,37:33:37:1.00:2	./.	./.
chr1	151259543	rs3748545	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,18:32:43:0.419:2	0/1:25,12:32:37:0.324:2	./.	./.	./.	./.	./.	./.	0/1:0,69:32:69:1.00:2	./.	./.
chr1	151260673	rs12745008	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,47:31:113:0.416:2	0/1:47,38:32:85:0.447:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	151262355	rs61818002	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:32:6:0.500:2	./.	./.	./.	0/1:25,20:32:45:0.444:2	./.	./.	./.	./.
chr1	151288172	rs1056847	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,15:30:15:1.00:2	./.	0/1:0,114:30:115:1.00:2	0/1:65,50:29:115:0.435:2	0/1:65,72:31:137:0.526:2	0/1:58,53:30:111:0.477:2	./.	0/1:0,114:31:114:1.00:2	./.
chr1	151288266	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:30:141:0.028:2
chr1	151288391	rs1752379	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:29:44:1.00:2	0/1:0,27:27:27:1.00:2	0/1:0,7:28:7:1.00:2	0/1:0,59:29:59:1.00:2	0/1:0,80:28:80:1.00:2	0/1:0,60:29:60:1.00:2	0/1:1,60:28:61:0.984:2	0/1:0,60:28:60:1.00:2	0/1:0,62:29:62:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,67:28:67:1.00:2
chr1	151288881	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:31:87:0.046:2	./.	./.	./.	./.	./.
chr1	151315287	rs2233854	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,55:28:114:0.482:2	0/1:42,39:29:81:0.481:2	0/1:39,39:28:78:0.500:2	./.
chr1	151316161	rs1752386	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:32:63:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,127:32:127:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,154:32:154:1.00:2	0/1:0,105:31:105:1.00:2	0/1:0,78:33:78:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,76:32:76:1.00:2
chr1	151342263	rs41285000	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,76:31:158:0.481:2	./.	0/1:89,86:29:176:0.491:2
chr1	151372138	rs7172	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,36:31:69:0.522:2	0/1:29,10:31:39:0.256:2	0/1:0,5:31:5:1.00:2	0/1:0,73:30:74:1.00:2	0/1:31,14:30:45:0.311:2	0/1:0,60:30:60:1.00:2	0/1:4,39:30:43:0.907:2	0/1:2,78:31:80:0.975:2	0/1:1,58:31:59:0.983:2	0/1:68,27:31:95:0.284:2	0/1:0,73:31:74:1.00:2
chr1	151373003	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:30:71:0.056:2	./.	./.	./.
chr1	151374025	rs4603	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:30,21:32:51:0.412:2	0/1:15,16:32:31:0.516:2	./.	./.	0/1:25,26:31:51:0.510:2	./.	./.	./.	./.	0/1:24,38:32:62:0.613:2	./.
chr1	151374077	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:32:91:0.044:2
chr1	151378887	rs369572684	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:158,4:32:163:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr1	151380611	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,3:33:52:0.058:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	151400383	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:33:162:0.025:2	./.
chr1	151496009	rs145912252	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:30:16:0.563:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	151501841	rs12044926	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,29:33:79:0.367:2	./.	./.	./.	./.	./.	./.
chr1	151502966	rs144143337	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,6:33:7:0.857:2	./.
chr1	151506526	rs41272467	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,10:30:24:0.417:2	./.	./.	./.	0/1:92,100:30:192:0.521:2	./.	./.	./.	./.
chr1	151512895	rs3828054	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:31:13:0.385:2	./.	./.	./.	0/1:71,29:30:100:0.290:2	./.	./.	0/1:29,25:30:54:0.463:2	./.
chr1	151584751	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.
chr1	151733327	rs74228558	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:31:10:0.300:2
chr1	151733335	rs8480	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,13:33:20:0.650:2	0/1:3,5:33:8:0.625:2	./.	0/1:8,10:33:18:0.556:2	0/1:9,22:32:31:0.710:2	0/1:12,9:34:21:0.429:2	./.	0/1:5,4:31:9:0.444:2
chr1	151735576	rs7007	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,16:32:55:0.291:2	0/1:42,21:32:63:0.333:2	./.	0/1:32,11:31:43:0.256:2	./.	./.	./.	./.
chr1	151740666	rs2495397	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:33:49:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,5:34:5:1.00:2	0/1:0,77:33:77:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,65:33:65:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,92:33:92:1.00:2	0/1:0,68:34:68:1.00:2	0/1:0,75:33:75:1.00:2	0/1:0,87:33:87:1.00:2
chr1	151747970	rs11204885	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,69:32:155:0.445:2	0/1:70,70:33:140:0.500:2	./.	./.
chr1	151751274	rs17853082	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,59:32:92:0.641:2	./.	./.	./.	./.	./.	./.
chr1	151755425	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:34:79:0.051:2
chr1	151786040	rs61754474	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,40:32:92:0.435:2	./.
chr1	151787406	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:32:122:0.033:2	./.	./.	./.	./.
chr1	151787451	rs41263732	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,81:31:163:0.497:2	./.	./.	./.	./.	./.	./.	./.
chr1	151801951	rs4845606	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,38:32:77:0.494:2	0/1:33,16:31:49:0.327:2	./.	./.	./.	./.	./.	./.
chr1	151820298	rs6587624	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:32:49:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,136:33:136:1.00:2	0/1:0,122:32:122:1.00:2	0/1:0,121:33:121:1.00:2	0/1:0,82:33:82:1.00:2	0/1:0,98:32:99:1.00:2
chr1	151820324	rs6587625	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:31:43:1.00:2	0/1:1,28:32:29:0.966:2	0/1:6,4:32:10:0.400:2	0/1:0,79:32:79:1.00:2	0/1:1,57:32:58:0.983:2	./.	0/1:66,43:33:109:0.394:2	0/1:64,41:32:105:0.390:2	0/1:0,96:32:96:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,78:32:78:1.00:2
chr1	151825991	rs7556386	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:30:41:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,3:27:3:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,37:29:37:1.00:2	./.	./.	0/1:21,24:29:45:0.533:2	0/1:0,54:30:54:1.00:2	./.	0/1:0,50:29:50:1.00:2
chr1	151867560	rs3762427	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,92:32:95:0.968:2	0/1:1,39:32:40:0.975:2	0/1:0,13:31:13:1.00:2	0/1:4,83:32:87:0.954:2	0/1:4,71:31:75:0.947:2	0/1:3,120:31:123:0.976:2	0/1:47,43:32:90:0.478:2	0/1:3,112:32:115:0.974:2	0/1:5,109:33:114:0.956:2	./.	0/1:1,94:32:95:0.989:2
chr1	152057605	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:32:169:0.024:2	./.	./.	./.	./.
chr1	152059046	rs202091282	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,13:14:169:0.078:2
chr1	152079989	rs1131471	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:60,54:32:114:0.474:2	0/1:48,38:32:86:0.442:2	./.	./.	0/1:77,76:32:153:0.497:2	0/1:4,185:31:189:0.979:2	0/1:63,69:32:132:0.523:2	0/1:93,75:31:168:0.446:2	0/1:172,5:34:177:0.028:2	0/1:50,65:32:115:0.565:2	./.
chr1	152081362	rs182615256	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,29:32:65:0.446:2	./.	./.	./.	./.	./.	./.
chr1	152081669	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:31:112:0.036:2	./.	./.	./.
chr1	152081921	rs2496253	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:64,79:32:143:0.552:2	0/1:35,40:31:75:0.533:2	./.	./.	0/1:70,61:32:131:0.466:2	0/1:3,134:32:137:0.978:2	0/1:104,81:32:185:0.438:2	0/1:108,78:32:186:0.419:2	./.	0/1:66,57:31:123:0.463:2	./.
chr1	152082257	rs369695249	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:30:86:0.047:2	./.	./.	./.	./.	0/1:70,7:28:77:0.091:2
chr1	152082304	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:31:85:0.047:2	./.	./.	./.	./.
chr1	152082320	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:85,4:30:89:0.045:2	./.	./.	./.	./.	./.	./.
chr1	152082437	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:31:82:0.049:2	./.	./.	./.	./.
chr1	152082449	rs199978971	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,5:30:88:0.057:2	./.	./.	0/1:57,3:33:60:0.050:2	./.
chr1	152082484	rs377407296	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,7:27:84:0.083:2	./.	./.	./.	./.
chr1	152083325	rs11803731	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:6,13:31:19:0.684:2	0/1:8,8:31:16:0.500:2	0/1:0,2:31:2:1.00:2	./.	0/1:16,15:30:31:0.484:2	./.	0/1:4,6:30:10:0.600:2	0/1:11,9:28:21:0.450:2	./.	0/1:9,9:30:18:0.500:2	0/1:0,8:31:8:1.00:2
chr1	152083372	rs201873363	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,7:20:50:0.140:2	./.	./.	./.
chr1	152083806	rs200947543	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,20:31:32:0.625:2	./.	./.	0/1:14,15:27:29:0.517:2	./.
chr1	152084213	rs199978168	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,13:29:93:0.140:2	./.	0/1:50,10:29:60:0.167:2	./.	0/1:46,7:33:53:0.132:2	./.
chr1	152084216	rs201131683	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,13:31:91:0.143:2	./.	0/1:53,10:31:63:0.159:2	./.	0/1:48,7:33:55:0.127:2	./.
chr1	152085505	rs2515663	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:29:74:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,7:26:7:1.00:2	0/1:0,82:30:82:1.00:2	0/1:0,49:29:49:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,48:29:48:1.00:2	0/1:0,106:30:106:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,90:30:90:1.00:2	0/1:0,112:29:112:1.00:2
chr1	152127455	rs75957773	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,85:32:190:0.447:2	0/1:96,91:32:187:0.487:2	0/1:99,95:32:194:0.490:2	./.	./.	./.
chr1	152127464	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,6:28:197:0.030:2	./.
chr1	152128121	rs72696940	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:82,104:31:187:0.559:2	0/1:94,91:31:185:0.492:2	./.	./.	0/1:107,79:31:186:0.425:2	./.	./.	./.	./.	./.	./.
chr1	152128212	rs143744326	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,81:32:177:0.458:2	./.
chr1	152128232	rs200878903	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,7:24:149:0.047:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152129087	rs78544048	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,33:31:156:0.212:2	0/1:123,33:33:156:0.212:2	0/1:108,53:32:161:0.329:2	./.	0/1:117,24:32:141:0.170:2	./.
chr1	152129094	rs76015112	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,35:31:162:0.216:2	0/1:121,34:31:155:0.219:2	0/1:102,47:32:149:0.315:2	./.	0/1:116,25:32:141:0.177:2	./.
chr1	152129100	rs200003389	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,5:30:160:0.031:2	0/1:153,8:32:161:0.050:2	0/1:145,7:32:152:0.046:2	./.	./.	./.
chr1	152129101	rs117596468	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,5:32:160:0.031:2	0/1:151,8:31:159:0.050:2	0/1:145,8:30:153:0.052:2	./.	./.	./.
chr1	152129115	rs113327860	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,13:27:164:0.079:2	0/1:157,10:29:167:0.060:2	0/1:138,17:29:155:0.110:2	./.	0/1:141,7:31:148:0.047:2	./.
chr1	152185750	rs12729662	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,7:31:11:0.636:2	0/1:33,86:31:119:0.723:2	./.	./.	0/1:26,80:31:106:0.755:2	0/1:26,116:31:143:0.817:2	./.	0/1:19,57:32:76:0.750:2	./.
chr1	152185762	rs41266112	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,22:32:24:0.917:2	0/1:0,16:30:16:1.00:2	./.	0/1:92,16:33:108:0.148:2	0/1:0,25:32:25:1.00:2	0/1:2,32:33:34:0.941:2	0/1:90,18:32:108:0.167:2	0/1:131,13:34:144:0.090:2	0/1:0,23:33:23:1.00:2	0/1:63,8:31:71:0.113:2	0/1:1,18:30:19:0.947:2
chr1	152185768	rs41266114	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,12:31:13:0.923:2	0/1:0,9:32:9:1.00:2	./.	0/1:93,9:32:102:0.088:2	0/1:0,12:31:12:1.00:2	0/1:2,20:31:22:0.909:2	0/1:89,10:30:99:0.101:2	0/1:130,5:31:135:0.037:2	0/1:0,10:33:10:1.00:2	0/1:62,6:32:68:0.088:2	0/1:1,11:31:12:0.917:2
chr1	152185774	rs61814932	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,6:29:7:0.857:2	0/1:0,4:33:4:1.00:2	./.	./.	0/1:1,5:32:6:0.833:2	0/1:1,12:31:13:0.923:2	./.	./.	0/1:0,4:34:4:1.00:2	./.	0/1:1,3:33:4:0.750:2
chr1	152185882	rs41266126	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,11:32:12:0.917:2	0/1:0,7:32:7:1.00:2	./.	./.	0/1:2,5:30:7:0.714:2	0/1:0,5:28:5:1.00:2	./.	./.	0/1:0,4:29:4:1.00:2	0/1:43,5:32:49:0.104:2	0/1:1,11:30:12:0.917:2
chr1	152186027	rs201503718	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,3:32:31:0.097:2	./.	0/1:99,6:32:105:0.057:2
chr1	152186042	rs12751022	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	./.
chr1	152186099	rs144801487	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,68:30:132:0.515:2	./.	./.	./.	./.	./.	./.
chr1	152186100	rs142956706	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:153,23:31:176:0.131:2	0/1:120,21:32:141:0.149:2	./.	./.	0/1:117,17:32:134:0.127:2	0/1:150,18:32:168:0.107:2	0/1:53,12:33:65:0.185:2	0/1:54,21:32:75:0.280:2	0/1:49,13:32:62:0.210:2	0/1:91,20:32:111:0.180:2	0/1:108,10:30:118:0.085:2
chr1	152186120	rs79071169	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:166,11:29:177:0.062:2	0/1:149,13:30:162:0.080:2	0/1:14,6:28:20:0.300:2	0/1:38,13:31:51:0.255:2	0/1:117,15:29:132:0.114:2	0/1:170,12:29:182:0.066:2	0/1:68,10:31:78:0.128:2	0/1:74,13:30:87:0.149:2	0/1:69,12:30:81:0.148:2	0/1:107,18:30:125:0.144:2	0/1:119,11:29:130:0.085:2
chr1	152186141	rs41266128	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:118,33:31:151:0.219:2	0/1:118,34:31:152:0.224:2	0/1:12,4:31:16:0.250:2	0/1:45,19:29:64:0.297:2	0/1:79,42:29:121:0.347:2	0/1:122,50:30:172:0.291:2	./.	./.	0/1:83,14:29:97:0.144:2	0/1:107,23:31:130:0.177:2	0/1:89,40:30:129:0.310:2
chr1	152186144	rs200748473	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:144,9:31:153:0.059:2	0/1:144,10:30:154:0.065:2	./.	./.	0/1:114,10:29:124:0.081:2	./.	0/1:74,6:25:80:0.075:2	0/1:94,9:30:103:0.087:2	0/1:89,10:27:99:0.101:2	./.	0/1:122,9:29:131:0.069:2
chr1	152186175	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,9:32:48:0.188:2	./.	./.	./.	./.	./.	./.	./.
chr1	152186178	rs4845748	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:71,42:31:113:0.372:2	0/1:64,42:32:106:0.396:2	./.	0/1:36,9:32:45:0.200:2	0/1:49,33:32:82:0.402:2	0/1:73,58:32:131:0.443:2	0/1:39,9:32:48:0.188:2	./.	0/1:50,19:33:69:0.275:2	0/1:68,25:32:93:0.269:2	0/1:53,40:32:93:0.430:2
chr1	152186179	rs199884729	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,6:30:45:0.133:2	./.	./.	./.	./.	./.	0/1:84,11:30:95:0.116:2	./.
chr1	152186185	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,10:31:126:0.079:2	./.	./.	./.	./.	./.
chr1	152186209	rs200517893	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,3:33:45:0.067:2	./.	0/1:75,5:30:80:0.063:2	./.	./.	0/1:39,7:32:46:0.152:2	./.	0/1:59,5:30:65:0.078:2
chr1	152186218	rs146450966	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,4:29:44:0.091:2	./.	./.	./.	./.	./.	0/1:72,6:29:78:0.077:2	./.
chr1	152186222	rs4845424	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,91:27:91:1.00:2	0/1:2,42:28:44:0.955:2	0/1:2,4:31:6:0.667:2	0/1:32,12:31:44:0.273:2	0/1:0,43:28:43:1.00:2	./.	0/1:20,19:29:40:0.487:2	0/1:43,27:31:70:0.386:2	0/1:1,28:29:29:0.966:2	0/1:24,47:29:71:0.662:2	0/1:0,47:27:47:1.00:2
chr1	152186247	rs199977704	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,3:35:77:0.039:2	0/1:95,5:32:100:0.050:2	./.	./.	./.	./.	./.	0/1:78,5:36:83:0.060:2
chr1	152186401	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,11:29:193:0.057:2	./.
chr1	152186417	rs150508178	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:113,69:31:182:0.379:2	0/1:126,62:31:188:0.330:2	0/1:21,3:31:24:0.125:2	./.	0/1:164,12:30:176:0.068:2	0/1:158,31:31:189:0.164:2	0/1:157,15:30:172:0.087:2	0/1:169,13:32:182:0.071:2	0/1:149,14:31:163:0.086:2	0/1:149,36:32:185:0.195:2	0/1:127,49:32:176:0.278:2
chr1	152186422	rs202168784	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,3:33:20:0.150:2	0/1:102,34:32:136:0.250:2	./.	./.	0/1:143,27:31:170:0.159:2	0/1:164,20:32:184:0.109:2	./.	0/1:162,22:32:184:0.120:2	./.
chr1	152186427	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,10:29:180:0.056:2	./.	./.	./.
chr1	152186443	rs140336724	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:155,27:28:182:0.148:2	0/1:169,13:27:182:0.071:2	./.	./.	0/1:141,21:29:162:0.130:2	0/1:155,14:28:169:0.083:2	./.	./.	./.	0/1:146,17:29:163:0.104:2	0/1:163,19:29:182:0.104:2
chr1	152186451	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,8:30:185:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152186452	rs113556887	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:183,4:32:187:0.021:2	./.	0/1:99,19:31:119:0.161:2	0/1:158,10:31:168:0.060:2	0/1:160,8:30:168:0.048:2	0/1:134,7:32:141:0.050:2	0/1:163,16:31:179:0.089:2	./.	0/1:158,9:31:167:0.054:2	./.
chr1	152186490	rs201463788	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:177,9:32:187:0.048:2	0/1:178,13:33:191:0.068:2	./.	0/1:128,28:31:156:0.179:2	0/1:170,18:31:188:0.096:2	0/1:174,10:32:184:0.054:2	0/1:167,27:33:194:0.139:2	0/1:162,31:32:193:0.161:2	0/1:163,32:33:195:0.164:2	0/1:172,13:33:185:0.070:2	0/1:174,13:31:188:0.070:2
chr1	152186525	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:177,6:31:183:0.033:2	./.	./.	./.	./.	0/1:178,6:28:184:0.033:2	./.	./.	./.	./.	0/1:174,7:33:182:0.039:2
chr1	152186535	rs113263380	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:177,10:32:187:0.053:2	./.	./.	./.	./.	0/1:179,6:31:186:0.032:2	./.	./.	0/1:187,4:33:191:0.021:2	./.	0/1:173,7:32:181:0.039:2
chr1	152186614	.	C	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:173,15:34:188:0.080:2	0/1:180,9:33:189:0.048:2	./.	./.	./.	0/1:172,24:32:196:0.122:2	./.	./.	./.	0/1:182,11:33:193:0.057:2	./.
chr1	152186631	rs111539149	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,5:32:187:0.027:2	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:34:194:0.021:2	./.
chr1	152186699	.	T	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:155,20:32:175:0.114:2	0/1:166,25:32:191:0.131:2	0/1:160,4:32:164:0.024:2	./.	0/1:160,22:32:182:0.121:2	0/1:164,19:32:183:0.104:2	0/1:181,11:32:192:0.057:2	0/1:181,12:33:193:0.062:2	0/1:180,11:33:191:0.058:2	0/1:172,11:32:183:0.060:2	0/1:167,11:33:178:0.062:2
chr1	152186708	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:154,10:34:164:0.061:2	0/1:170,17:32:187:0.091:2	./.	./.	0/1:178,12:32:190:0.063:2	0/1:175,9:32:184:0.049:2	0/1:176,13:32:189:0.069:2	0/1:182,11:32:193:0.057:2	0/1:159,25:32:185:0.136:2	0/1:184,6:35:190:0.032:2	0/1:171,11:32:182:0.060:2
chr1	152186745	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,12:32:190:0.063:2	./.	./.	./.
chr1	152186766	rs4845747	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:113,76:32:189:0.402:2	0/1:124,68:33:192:0.354:2	0/1:94,20:32:114:0.175:2	0/1:171,16:32:187:0.086:2	0/1:117,78:32:195:0.400:2	0/1:127,61:33:188:0.324:2	0/1:162,30:32:192:0.156:2	0/1:161,30:32:191:0.157:2	0/1:129,57:33:186:0.306:2	0/1:143,51:33:194:0.263:2	0/1:113,70:32:183:0.383:2
chr1	152186802	rs78949172	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:173,20:27:193:0.104:2	0/1:180,11:27:191:0.058:2	0/1:63,5:29:68:0.074:2	0/1:147,9:26:156:0.058:2	0/1:171,9:26:180:0.050:2	0/1:159,15:27:174:0.086:2	0/1:183,9:27:192:0.047:2	0/1:169,16:29:185:0.086:2	0/1:125,16:29:141:0.113:2	0/1:186,7:27:193:0.036:2	0/1:159,23:24:182:0.126:2
chr1	152186837	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:169,23:31:192:0.120:2	0/1:174,17:31:191:0.089:2	./.	./.	./.	./.	./.	./.	./.	0/1:174,17:32:191:0.089:2	0/1:176,14:32:190:0.074:2
chr1	152186909	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,6:32:183:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152186960	rs2172974	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:174,10:31:184:0.054:2	0/1:182,8:33:190:0.042:2	./.	./.	./.	0/1:183,7:32:190:0.037:2	./.	0/1:184,5:29:190:0.026:2	./.	./.	0/1:181,5:33:186:0.027:2
chr1	152187028	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,16:30:195:0.082:2	0/1:173,21:29:194:0.108:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152187166	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,5:31:181:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152187178	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,8:32:189:0.042:2	./.	./.	./.	./.	./.
chr1	152187183	rs138393387	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:162,21:32:183:0.115:2	0/1:165,25:33:190:0.132:2	0/1:34,4:33:38:0.105:2	./.	0/1:161,28:31:189:0.148:2	0/1:169,17:32:186:0.091:2	0/1:181,8:34:189:0.042:2	0/1:180,15:32:195:0.077:2	0/1:176,7:32:183:0.038:2	0/1:163,25:32:188:0.133:2	0/1:148,33:32:181:0.182:2
chr1	152187276	rs199952550	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:64,8:33:72:0.111:2	0/1:171,21:32:192:0.109:2	./.	./.	0/1:181,16:33:197:0.081:2	0/1:176,15:34:191:0.079:2	./.	0/1:188,8:33:196:0.041:2	./.
chr1	152187437	.	A	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:170,16:33:186:0.086:2	0/1:167,14:30:181:0.077:2	./.	./.	0/1:186,10:32:196:0.051:2	0/1:184,10:31:194:0.052:2	0/1:177,11:30:188:0.059:2	0/1:183,10:32:194:0.052:2	0/1:185,14:32:199:0.070:2	0/1:187,6:33:193:0.031:2	0/1:178,7:33:186:0.038:2
chr1	152187451	rs144369469	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:173,14:33:187:0.075:2	./.	./.	./.	./.	./.	./.
chr1	152187452	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,7:31:178:0.039:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152187510	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:161,10:32:171:0.058:2	0/1:109,9:32:118:0.076:2	./.	./.	0/1:132,4:31:136:0.029:2	0/1:157,4:33:161:0.025:2	0/1:121,5:33:126:0.040:2	./.	./.	./.	./.
chr1	152187530	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:111,5:30:116:0.043:2	./.	./.	./.	0/1:155,5:31:160:0.031:2	./.	./.	./.	./.	./.
chr1	152187552	rs373300484	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,12:31:157:0.076:2	0/1:102,8:32:110:0.073:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152187554	rs61814935	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:95,62:29:157:0.395:2	0/1:62,46:30:108:0.426:2	0/1:11,8:30:19:0.421:2	./.	0/1:60,32:29:92:0.348:2	0/1:108,31:29:139:0.223:2	0/1:64,29:29:93:0.312:2	0/1:96,45:29:141:0.319:2	0/1:61,40:31:101:0.396:2	0/1:113,32:29:145:0.221:2	0/1:59,19:31:78:0.244:2
chr1	152187562	rs61814936	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,154:31:154:1.00:2	0/1:0,110:31:110:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,84:31:84:1.00:2	0/1:0,84:30:84:1.00:2	0/1:0,127:31:127:1.00:2	0/1:0,90:31:90:1.00:2	0/1:0,123:30:123:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,124:30:124:1.00:2	0/1:0,68:31:68:1.00:2
chr1	152187588	rs201071455	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:153,21:33:174:0.121:2	0/1:159,24:32:183:0.131:2	./.	./.	0/1:157,34:31:191:0.178:2	0/1:153,37:31:190:0.195:2	0/1:154,8:32:162:0.049:2	0/1:169,11:31:180:0.061:2	0/1:178,14:32:192:0.073:2	0/1:171,16:32:187:0.086:2	0/1:134,26:32:160:0.163:2
chr1	152187589	rs143684430	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,6:30:30:0.200:2	0/1:127,41:31:168:0.244:2	./.	./.	0/1:146,22:30:168:0.131:2	0/1:149,30:30:179:0.168:2	./.	0/1:148,37:31:185:0.200:2	./.
chr1	152187595	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,14:31:191:0.073:2	./.	./.	./.	./.	./.
chr1	152187606	rs139799138	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,12:32:40:0.300:2	./.	0/1:176,15:31:191:0.079:2	./.	0/1:165,27:32:192:0.141:2	0/1:169,21:32:190:0.111:2	0/1:165,21:33:186:0.113:2	./.	./.
chr1	152187619	rs80264994	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:175,9:30:184:0.049:2	0/1:179,11:23:191:0.058:2	0/1:180,9:27:190:0.048:2	./.	./.	0/1:180,7:24:187:0.037:2	./.	0/1:177,7:29:184:0.038:2
chr1	152187628	rs75639578	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:57,7:28:64:0.109:2	0/1:143,37:29:180:0.206:2	./.	./.	0/1:168,26:29:194:0.134:2	0/1:164,29:28:193:0.150:2	./.	0/1:155,36:29:191:0.188:2	./.
chr1	152187657	rs61814937	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:164,17:32:181:0.094:2	0/1:182,6:32:188:0.032:2	0/1:174,14:33:188:0.074:2	./.	./.	0/1:157,17:33:174:0.098:2	./.	0/1:165,17:32:182:0.093:2
chr1	152187810	rs145371085	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,71:29:73:0.973:2	0/1:1,39:30:40:0.975:2	0/1:0,11:28:11:1.00:2	0/1:0,48:30:49:1.00:2	0/1:0,41:30:42:1.00:2	0/1:2,57:30:59:0.966:2	0/1:0,50:29:50:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,60:29:60:1.00:2	0/1:1,33:29:34:0.971:2
chr1	152187827	.	C	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:54,12:31:66:0.182:2	0/1:29,6:30:35:0.171:2	./.	./.	./.	./.	./.	./.	./.	0/1:69,5:31:74:0.068:2	0/1:23,6:31:29:0.207:2
chr1	152187862	rs374237661	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,5:26:32:0.156:2
chr1	152187900	rs200252380	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:123,4:33:127:0.031:2	./.	./.	0/1:98,6:33:104:0.058:2	0/1:107,8:32:115:0.070:2	0/1:98,5:32:103:0.049:2	0/1:119,7:31:126:0.056:2	0/1:132,6:31:138:0.043:2	./.	0/1:98,4:32:102:0.039:2	0/1:80,7:31:87:0.080:2
chr1	152187935	rs61814938	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:111,71:30:182:0.390:2	0/1:115,75:31:190:0.395:2	0/1:23,10:30:33:0.303:2	./.	0/1:115,72:30:188:0.385:2	0/1:121,58:29:179:0.324:2	0/1:160,35:28:195:0.179:2	0/1:153,37:31:190:0.195:2	0/1:149,43:31:192:0.224:2	0/1:133,51:30:184:0.277:2	0/1:128,52:30:180:0.289:2
chr1	152187945	rs61814939	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:93,84:33:177:0.475:2	0/1:103,81:32:184:0.440:2	0/1:23,13:32:36:0.361:2	./.	0/1:97,90:31:187:0.481:2	0/1:101,76:31:178:0.429:2	0/1:130,62:32:193:0.323:2	0/1:146,42:32:189:0.223:2	0/1:144,49:33:193:0.254:2	0/1:125,60:32:185:0.324:2	0/1:123,62:33:185:0.335:2
chr1	152188041	rs200444708	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:176,11:29:187:0.059:2	0/1:178,14:28:192:0.073:2	0/1:113,9:30:122:0.074:2	0/1:22,28:30:52:0.560:2	0/1:186,9:24:195:0.046:2	0/1:182,6:30:188:0.032:2	./.	0/1:187,9:29:197:0.046:2	0/1:181,9:30:190:0.047:2	0/1:179,8:29:187:0.043:2	0/1:168,18:29:186:0.097:2
chr1	152188062	rs79940627	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,27:33:124:0.218:2	./.	0/1:169,22:31:191:0.115:2	./.	./.	./.	./.	./.	./.
chr1	152188109	rs61814940	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:102,66:32:168:0.393:2	0/1:118,72:32:190:0.379:2	0/1:53,50:32:103:0.485:2	0/1:183,6:29:191:0.032:2	0/1:121,74:32:195:0.379:2	0/1:110,71:32:181:0.392:2	0/1:135,53:32:188:0.282:2	0/1:141,46:32:187:0.246:2	0/1:144,48:34:192:0.250:2	0/1:131,51:32:183:0.280:2	0/1:112,69:32:181:0.381:2
chr1	152188118	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:161,12:33:173:0.069:2	0/1:178,10:31:188:0.053:2	./.	./.	0/1:183,8:31:191:0.042:2	0/1:175,8:32:183:0.044:2	0/1:178,14:31:192:0.073:2	0/1:185,10:31:195:0.051:2	0/1:180,7:31:187:0.037:2	0/1:170,16:31:186:0.086:2	./.
chr1	152188155	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,9:32:192:0.047:2	./.	./.	./.
chr1	152188176	rs147618491	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:132,50:33:182:0.275:2	0/1:143,34:32:177:0.192:2	0/1:42,12:32:54:0.222:2	0/1:137,39:32:176:0.222:2	0/1:159,33:31:192:0.172:2	0/1:129,58:31:187:0.310:2	0/1:166,22:32:188:0.117:2	0/1:160,24:31:184:0.130:2	0/1:141,44:33:185:0.238:2	0/1:161,32:32:193:0.166:2	0/1:132,49:33:181:0.271:2
chr1	152188212	rs4248393	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:161,10:32:171:0.058:2	0/1:175,12:30:187:0.064:2	./.	./.	0/1:189,5:33:194:0.026:2	0/1:178,9:28:187:0.048:2	0/1:180,5:32:185:0.027:2	0/1:179,10:32:189:0.053:2	./.	0/1:179,8:27:187:0.043:2	0/1:168,15:32:183:0.082:2
chr1	152188319	rs201547528	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,22:30:180:0.122:2	0/1:167,21:31:188:0.112:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152188370	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,11:25:187:0.059:2	0/1:177,9:27:187:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152188413	rs200760332	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:39,4:30:43:0.093:2	0/1:150,47:31:197:0.239:2	./.	./.	0/1:172,26:32:198:0.131:2	0/1:178,19:31:197:0.096:2	./.	0/1:151,37:32:188:0.197:2	./.
chr1	152188436	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,18:32:192:0.094:2
chr1	152188463	rs61814941	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:152,40:30:192:0.208:2	0/1:124,49:31:173:0.283:2	./.	./.	0/1:175,21:31:197:0.107:2	0/1:164,34:30:198:0.172:2	0/1:167,22:32:189:0.116:2	0/1:167,25:31:192:0.130:2	0/1:167,22:32:189:0.116:2	0/1:155,39:31:194:0.201:2	0/1:149,42:31:193:0.220:2
chr1	152188588	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,5:33:191:0.026:2	./.	./.	./.	./.	./.
chr1	152188593	rs201468984	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:156,26:32:182:0.143:2	0/1:160,19:32:179:0.106:2	0/1:37,5:31:42:0.119:2	./.	0/1:158,32:32:190:0.168:2	0/1:177,11:32:188:0.059:2	0/1:181,5:34:186:0.027:2	0/1:179,5:33:184:0.027:2	0/1:170,11:34:181:0.061:2	0/1:170,15:31:185:0.081:2	0/1:167,16:32:183:0.087:2
chr1	152188686	rs200335129	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:168,25:33:193:0.130:2	./.	./.	0/1:183,11:32:194:0.057:2	0/1:182,13:34:195:0.067:2	./.	0/1:174,9:33:183:0.049:2	./.
chr1	152188713	rs200918497	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152188847	rs145667921	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:168,13:32:181:0.072:2	0/1:175,9:32:184:0.049:2	./.	./.	0/1:182,12:32:194:0.062:2	0/1:183,10:31:193:0.052:2	0/1:180,18:32:198:0.091:2	0/1:169,26:31:195:0.133:2	0/1:180,16:33:196:0.082:2	0/1:177,16:32:193:0.083:2	0/1:182,6:33:188:0.032:2
chr1	152188861	rs201735593	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:180,13:31:193:0.067:2	./.	./.	./.	./.	./.	./.
chr1	152188862	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,6:31:183:0.033:2
chr1	152188919	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:178,10:30:188:0.053:2	./.	./.	./.	./.	./.	./.
chr1	152188920	rs61814942	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:147,38:32:186:0.205:2	0/1:156,35:30:191:0.183:2	./.	./.	0/1:165,25:30:190:0.132:2	0/1:145,38:32:183:0.208:2	0/1:95,41:32:136:0.301:2	0/1:136,48:32:184:0.261:2	0/1:137,49:33:186:0.263:2	0/1:146,40:32:187:0.215:2	0/1:159,23:31:182:0.126:2
chr1	152188940	rs34655925	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:157,20:30:178:0.113:2	0/1:156,34:30:190:0.179:2	0/1:26,9:30:35:0.257:2	0/1:95,47:30:142:0.331:2	0/1:139,20:30:159:0.126:2	0/1:155,30:29:185:0.162:2	0/1:100,18:28:118:0.153:2	0/1:134,43:29:178:0.243:2	0/1:166,23:29:189:0.122:2	0/1:131,43:29:175:0.247:2	0/1:155,29:30:185:0.158:2
chr1	152188961	rs76879172	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:159,13:31:172:0.076:2	0/1:172,13:32:185:0.070:2	./.	0/1:140,16:29:156:0.103:2	0/1:143,34:31:177:0.192:2	0/1:162,26:31:188:0.138:2	./.	./.	0/1:169,14:32:183:0.077:2	0/1:170,12:30:182:0.066:2	0/1:150,25:30:175:0.143:2
chr1	152188962	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,6:32:173:0.035:2	0/1:180,9:32:189:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152188964	rs78582525	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:158,17:32:175:0.097:2	0/1:167,21:31:188:0.112:2	0/1:37,7:31:44:0.159:2	./.	0/1:155,20:30:175:0.114:2	0/1:173,17:31:190:0.089:2	0/1:123,17:31:140:0.121:2	0/1:156,32:30:188:0.170:2	0/1:164,16:33:180:0.089:2	0/1:170,14:31:184:0.076:2	0/1:165,13:29:179:0.073:2
chr1	152188995	rs377679965	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,6:29:107:0.056:2	./.	./.	./.	./.	./.	./.	./.
chr1	152188998	rs80018286	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:109,44:31:153:0.288:2	0/1:98,36:32:134:0.269:2	0/1:29,5:32:34:0.147:2	0/1:95,6:31:101:0.059:2	0/1:95,40:31:135:0.296:2	0/1:85,49:31:134:0.366:2	0/1:90,16:32:106:0.151:2	0/1:91,15:32:106:0.142:2	0/1:92,18:33:110:0.164:2	0/1:107,27:31:134:0.201:2	0/1:69,41:32:111:0.373:2
chr1	152188999	rs149648668	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,33:30:100:0.330:2	./.	./.	0/1:93,10:31:103:0.097:2	0/1:91,12:30:103:0.117:2	./.	0/1:119,13:30:132:0.098:2	./.
chr1	152189005	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,14:32:129:0.109:2	./.	./.	./.	./.	./.
chr1	152189016	rs200517377	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,5:33:27:0.185:2	./.	0/1:119,10:32:129:0.078:2	./.	0/1:93,12:32:105:0.114:2	0/1:85,11:32:96:0.115:2	0/1:85,5:29:90:0.056:2	./.	./.
chr1	152189029	rs76438416	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:113,7:30:120:0.058:2	0/1:112,9:30:121:0.074:2	./.	./.	./.	./.	0/1:97,5:32:102:0.049:2
chr1	152189038	rs145118416	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,3:32:17:0.176:2	0/1:40,25:30:65:0.385:2	./.	./.	0/1:83,10:29:93:0.108:2	0/1:83,9:31:92:0.098:2	./.	0/1:96,15:29:111:0.135:2	./.
chr1	152189055	rs4845749	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:31:92:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,5:34:5:1.00:2	0/1:1,22:32:23:0.957:2	0/1:0,63:31:63:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,45:32:46:1.00:2	0/1:2,49:32:51:0.961:2	0/1:0,47:33:47:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,52:31:52:1.00:2
chr1	152189067	rs71625162	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,5:31:50:0.100:2	./.	0/1:60,3:35:63:0.048:2
chr1	152189221	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,8:30:188:0.043:2	./.
chr1	152189237	rs200543988	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:106,78:32:184:0.424:2	0/1:101,62:31:163:0.380:2	0/1:17,7:32:24:0.292:2	./.	0/1:159,10:32:169:0.059:2	0/1:158,29:32:187:0.155:2	0/1:148,9:33:157:0.057:2	0/1:141,11:31:152:0.072:2	0/1:114,9:32:123:0.073:2	0/1:149,37:31:186:0.199:2	0/1:105,55:31:160:0.344:2
chr1	152189242	rs201431455	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,27:32:127:0.213:2	./.	./.	0/1:135,25:32:161:0.156:2	0/1:138,24:32:162:0.148:2	./.	0/1:164,20:31:184:0.109:2	./.
chr1	152189247	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,14:30:172:0.082:2	./.	./.	./.
chr1	152189263	rs149533530	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:162,20:28:182:0.110:2	0/1:164,23:28:187:0.123:2	0/1:22,4:29:26:0.154:2	./.	0/1:149,24:29:173:0.139:2	0/1:162,13:29:175:0.074:2	./.	./.	./.	0/1:162,23:27:185:0.124:2	0/1:167,18:28:185:0.097:2
chr1	152189271	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,8:31:182:0.044:2	0/1:184,6:32:190:0.032:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152189272	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,12:30:108:0.111:2	0/1:168,9:30:177:0.051:2	0/1:170,9:31:179:0.050:2	0/1:145,14:31:159:0.088:2	0/1:173,11:32:184:0.060:2	0/1:135,5:33:140:0.036:2	0/1:167,12:32:179:0.067:2	0/1:178,5:30:183:0.027:2
chr1	152189310	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:183,5:31:188:0.027:2	0/1:186,9:30:195:0.046:2	./.	0/1:116,31:32:147:0.211:2	0/1:180,15:32:195:0.077:2	0/1:166,18:31:185:0.098:2	0/1:169,25:32:194:0.129:2	0/1:158,34:32:192:0.177:2	0/1:186,9:34:195:0.046:2	0/1:167,24:32:191:0.126:2	0/1:167,19:31:186:0.102:2
chr1	152189345	rs199713875	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,7:31:175:0.040:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152189355	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:173,5:30:178:0.028:2	./.	./.	./.	./.	0/1:181,6:30:187:0.032:2	./.	./.	./.	./.	./.
chr1	152189434	.	C	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:172,15:33:187:0.080:2	0/1:170,13:33:183:0.071:2	./.	./.	./.	0/1:158,34:33:192:0.177:2	./.	./.	./.	0/1:184,8:32:192:0.042:2	./.
chr1	152189519	.	T	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:134,9:33:143:0.063:2	./.	./.	./.	0/1:141,12:31:153:0.078:2	0/1:131,8:30:139:0.058:2	./.	0/1:150,4:32:154:0.026:2	./.	./.	0/1:128,8:33:136:0.059:2
chr1	152189528	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:125,8:32:133:0.060:2	0/1:99,11:32:110:0.100:2	./.	./.	0/1:134,10:29:144:0.069:2	0/1:116,6:29:122:0.049:2	0/1:115,24:31:139:0.173:2	0/1:135,8:29:144:0.056:2	0/1:98,6:32:104:0.058:2	0/1:125,10:29:135:0.074:2	0/1:114,7:32:121:0.058:2
chr1	152189586	rs77598269	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:40,33:32:73:0.452:2	0/1:32,15:33:47:0.319:2	0/1:3,3:26:6:0.500:2	./.	0/1:17,14:33:31:0.452:2	0/1:26,9:33:35:0.257:2	0/1:29,5:33:34:0.147:2	0/1:23,9:31:32:0.281:2	0/1:4,6:35:10:0.600:2	0/1:33,13:32:46:0.283:2	0/1:26,10:33:36:0.278:2
chr1	152189622	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:146,20:28:166:0.120:2	0/1:95,10:29:105:0.095:2	./.	./.	./.	0/1:78,12:28:90:0.133:2	0/1:74,4:32:78:0.051:2	./.	0/1:32,7:28:39:0.179:2	0/1:105,6:28:111:0.054:2	0/1:79,13:27:92:0.141:2
chr1	152189657	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:163,18:32:181:0.099:2	0/1:140,17:32:158:0.108:2	./.	./.	./.	./.	./.	./.	./.	0/1:173,15:32:188:0.080:2	0/1:136,7:32:143:0.049:2
chr1	152189729	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,7:32:177:0.040:2	0/1:153,7:31:160:0.044:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152189780	rs368528146	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:125,8:32:133:0.060:2	./.	./.	0/1:135,4:31:139:0.029:2	./.	./.	./.	./.	./.	0/1:130,6:32:136:0.044:2
chr1	152189848	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,3:33:27:0.111:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152189864	rs111689937	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	0/1:0,5:30:5:1.00:2	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2
chr1	152189893	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,3:32:34:0.088:2	./.	./.	./.	./.	./.
chr1	152189998	rs187453916	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152189999	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2
chr1	152190014	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2
chr1	152190112	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,5:29:5:1.00:2	0/1:0,3:30:3:1.00:2	./.	0/1:56,4:27:60:0.067:2	0/1:1,3:31:4:0.750:2	0/1:0,4:31:4:1.00:2	./.	./.	./.	0/1:31,5:31:36:0.139:2	./.
chr1	152190257	.	A	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:161,16:32:177:0.090:2	0/1:158,11:31:169:0.065:2	./.	./.	0/1:184,15:32:199:0.075:2	0/1:171,10:33:181:0.055:2	0/1:174,16:32:190:0.084:2	0/1:163,18:32:181:0.099:2	0/1:146,11:34:157:0.070:2	0/1:177,9:34:186:0.048:2	0/1:153,8:33:161:0.050:2
chr1	152190271	rs200643488	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:177,18:29:195:0.092:2	./.	./.	./.	./.	./.	./.
chr1	152190330	rs200844006	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:83,29:31:112:0.259:2	0/1:75,24:31:99:0.242:2	./.	./.	0/1:82,8:30:90:0.089:2	0/1:75,19:29:94:0.202:2	0/1:56,11:31:67:0.164:2	0/1:73,27:32:101:0.270:2	0/1:87,16:31:103:0.155:2	0/1:73,13:32:86:0.151:2	0/1:83,18:30:101:0.178:2
chr1	152190371	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:33:11:0.364:2	./.	./.	./.	./.	./.	./.	./.
chr1	152190452	rs140247939	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,25:28:26:0.962:2	0/1:1,11:30:12:0.917:2	./.	0/1:8,6:33:14:0.429:2	0/1:3,7:28:10:0.700:2	0/1:0,9:31:9:1.00:2	0/1:16,8:31:25:0.333:2	0/1:16,10:33:27:0.385:2	0/1:0,9:32:9:1.00:2	0/1:12,11:32:23:0.478:2	0/1:2,3:31:5:0.600:2
chr1	152190477	rs200854195	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,7:33:36:0.194:2	./.	0/1:68,6:32:74:0.081:2	./.	./.	./.	./.	0/1:50,6:32:56:0.107:2
chr1	152190631	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,15:31:190:0.079:2	./.
chr1	152190647	rs201434802	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:124,64:31:188:0.340:2	0/1:112,69:32:181:0.381:2	0/1:15,5:32:20:0.250:2	./.	0/1:176,10:28:186:0.054:2	0/1:160,27:32:187:0.144:2	0/1:172,13:32:185:0.070:2	0/1:159,21:31:180:0.117:2	0/1:139,9:32:148:0.061:2	0/1:142,41:32:183:0.224:2	0/1:122,45:32:167:0.269:2
chr1	152190652	rs200579715	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:128,25:32:153:0.163:2	./.	./.	0/1:158,25:31:183:0.137:2	0/1:150,32:33:182:0.176:2	./.	0/1:149,36:32:185:0.195:2	./.
chr1	152190657	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,20:29:175:0.114:2	./.	./.	./.
chr1	152190673	rs201109361	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:152,18:30:170:0.106:2	0/1:153,13:27:166:0.078:2	./.	./.	0/1:165,23:29:188:0.122:2	0/1:135,26:29:161:0.161:2	./.	./.	./.	0/1:156,14:28:170:0.082:2	0/1:154,16:30:170:0.094:2
chr1	152190681	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,8:31:169:0.047:2	0/1:164,6:32:170:0.035:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152190682	rs71625163	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,3:30:19:0.158:2	0/1:100,28:31:128:0.219:2	0/1:174,4:31:178:0.022:2	0/1:158,7:32:165:0.042:2	0/1:144,17:31:161:0.106:2	0/1:134,16:32:150:0.107:2	0/1:125,5:32:130:0.038:2	0/1:152,8:31:160:0.050:2	0/1:159,5:32:165:0.030:2
chr1	152190720	rs7514457	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:146,43:32:189:0.228:2	0/1:135,52:32:187:0.278:2	0/1:24,3:33:27:0.111:2	0/1:100,51:32:151:0.338:2	0/1:145,51:32:196:0.260:2	0/1:126,51:31:178:0.288:2	0/1:119,45:32:164:0.274:2	0/1:118,39:32:157:0.248:2	0/1:88,53:32:141:0.376:2	0/1:163,24:33:187:0.128:2	0/1:117,47:32:164:0.287:2
chr1	152190755	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,8:31:179:0.045:2	0/1:178,7:32:185:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,6:30:178:0.034:2
chr1	152190765	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:177,9:32:187:0.048:2	0/1:178,6:32:184:0.033:2	./.	./.	./.	./.	./.	./.	./.	0/1:184,6:32:191:0.032:2	./.
chr1	152190835	rs144383071	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:39,19:31:58:0.328:2	0/1:111,81:31:192:0.422:2	./.	./.	0/1:128,69:31:197:0.350:2	0/1:121,76:31:197:0.386:2	./.	0/1:115,70:31:185:0.378:2	./.
chr1	152190844	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:186,4:33:190:0.021:2	0/1:182,5:32:187:0.027:2	./.	./.	./.	0/1:187,6:28:194:0.031:2	./.	./.	./.	./.	./.
chr1	152190929	rs201161687	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:181,10:32:191:0.052:2	0/1:155,6:31:161:0.037:2	./.	./.	./.	0/1:185,5:32:190:0.026:2	0/1:190,5:32:195:0.026:2	0/1:184,9:32:193:0.047:2	0/1:192,4:32:196:0.020:2	0/1:177,8:33:185:0.043:2	0/1:175,11:30:186:0.059:2
chr1	152190938	rs139994162	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,5:33:188:0.027:2
chr1	152190945	rs77376932	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,69:31:187:0.369:2	./.	./.	0/1:115,66:32:181:0.365:2	0/1:120,71:31:191:0.372:2	./.	0/1:116,68:31:184:0.370:2	./.
chr1	152190947	rs142424978	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,70:31:189:0.372:2	./.	./.	./.	./.	./.	./.	./.
chr1	152190996	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,5:31:129:0.039:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152191033	rs148722408	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,5:28:105:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152191051	rs74868796	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:110,7:31:117:0.060:2	0/1:59,6:33:65:0.092:2	./.	./.	0/1:84,5:31:89:0.056:2	./.	./.	./.	./.	0/1:45,35:33:80:0.438:2	0/1:60,42:32:103:0.412:2
chr1	152191139	rs201982359	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:31:158:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152191168	rs146693658	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:141,11:29:153:0.072:2	0/1:118,6:32:124:0.048:2	./.	./.	./.	0/1:176,5:32:181:0.028:2	0/1:183,5:28:188:0.027:2	./.	./.	0/1:167,4:34:171:0.023:2	./.
chr1	152191197	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:34:158:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152191290	rs200852837	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:107,10:29:117:0.085:2	0/1:64,5:32:69:0.072:2	./.	./.	./.	./.	./.	0/1:124,5:32:129:0.039:2	0/1:142,5:31:147:0.034:2	0/1:106,4:33:110:0.036:2	0/1:101,9:34:110:0.082:2
chr1	152191312	rs182032057	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,6:28:106:0.057:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152191328	rs202240072	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:31:92:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152191343	rs142342392	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,5:31:82:0.061:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152191387	rs144929567	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:68,4:28:72:0.056:2	0/1:36,7:27:43:0.163:2	./.	0/1:51,8:27:59:0.136:2	0/1:29,4:27:33:0.121:2	./.	./.	./.	./.	0/1:34,4:29:38:0.105:2	0/1:32,4:28:36:0.111:2
chr1	152191404	rs142336181	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:60,6:32:66:0.091:2	0/1:33,13:32:46:0.283:2	./.	0/1:46,9:32:55:0.164:2	0/1:30,3:32:33:0.091:2	./.	0/1:26,5:31:31:0.161:2	./.	./.	0/1:30,5:31:35:0.143:2	0/1:34,5:32:39:0.128:2
chr1	152191456	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:47,7:33:54:0.130:2	./.	0/1:83,4:33:87:0.046:2	./.	./.	./.	./.	./.	./.	./.
chr1	152191709	rs6662450	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,56:32:57:0.982:2	0/1:0,40:32:40:1.00:2	./.	0/1:42,51:32:93:0.548:2	0/1:1,75:32:76:0.987:2	0/1:0,94:32:94:1.00:2	0/1:46,35:32:81:0.432:2	0/1:38,23:32:61:0.377:2	0/1:0,79:32:79:1.00:2	0/1:43,29:32:72:0.403:2	0/1:0,60:32:60:1.00:2
chr1	152191879	rs10788828	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,78:32:78:1.00:2	0/1:3,70:31:73:0.959:2	0/1:10,7:30:17:0.412:2	0/1:65,63:31:128:0.492:2	0/1:0,170:31:170:1.00:2	0/1:0,131:31:131:1.00:2	0/1:49,73:32:122:0.598:2	0/1:72,67:32:139:0.482:2	0/1:0,163:32:163:1.00:2	0/1:81,54:32:135:0.400:2	0/1:3,119:32:122:0.975:2
chr1	152192098	rs200002963	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:89,8:26:97:0.082:2	0/1:41,5:25:46:0.109:2	./.	0/1:95,5:29:100:0.050:2	0/1:97,8:21:105:0.076:2	./.	./.	./.	./.	0/1:127,6:24:134:0.045:2	0/1:105,9:23:114:0.079:2
chr1	152192099	rs77790012	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:89,8:26:97:0.082:2	0/1:41,5:30:46:0.109:2	./.	0/1:98,5:32:103:0.049:2	0/1:99,8:24:107:0.075:2	0/1:97,4:31:101:0.040:2	0/1:120,5:30:125:0.040:2	0/1:119,5:26:124:0.040:2	./.	0/1:125,7:25:132:0.053:2	0/1:105,9:29:114:0.079:2
chr1	152192102	rs201373508	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:89,8:30:97:0.082:2	0/1:43,5:29:48:0.104:2	./.	0/1:103,5:31:108:0.046:2	0/1:104,8:29:112:0.071:2	0/1:108,4:31:112:0.036:2	0/1:124,5:30:129:0.039:2	0/1:123,5:31:128:0.039:2	./.	0/1:128,6:31:134:0.045:2	0/1:103,10:27:113:0.088:2
chr1	152192114	rs7520249	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,52:31:143:0.364:2	0/1:66,47:32:113:0.416:2	0/1:8,11:30:19:0.579:2	0/1:66,64:31:130:0.492:2	0/1:54,109:30:163:0.669:2	0/1:46,108:30:154:0.701:2	0/1:101,71:31:173:0.413:2	0/1:105,69:31:174:0.397:2	0/1:23,122:31:145:0.841:2	0/1:94,58:31:152:0.382:2	0/1:51,82:31:134:0.617:2
chr1	152192153	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:144,14:32:158:0.089:2	0/1:138,7:32:145:0.048:2	./.	0/1:181,7:25:188:0.037:2	./.	./.	./.	./.	./.	0/1:148,8:29:156:0.051:2	0/1:137,8:33:145:0.055:2
chr1	152192163	rs61814943	G	T,C	.	PASS	AC=5,1;AF=0.278,0.056;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:BQ:DP:FA:SS	./.	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	./.	0/2:30:191:0.037:2	0/1:32:180:0.296:2	0/1:31:165:0.284:2	0/1:31:188:0.226:2	0/1:31:178:0.219:2	0/1:33:188:0.176:2	./.	./.
chr1	152192219	rs79513582	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:109,51:33:160:0.319:2	0/1:100,50:33:150:0.333:2	0/1:40,4:33:44:0.091:2	./.	0/1:165,32:30:197:0.162:2	0/1:157,30:33:187:0.160:2	0/1:167,21:32:188:0.112:2	0/1:167,23:31:190:0.121:2	0/1:181,8:33:189:0.042:2	0/1:141,35:33:176:0.199:2	0/1:156,26:31:182:0.143:2
chr1	152192259	rs76694305	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:105,50:31:155:0.323:2	0/1:121,43:32:164:0.262:2	./.	./.	0/1:176,16:31:192:0.083:2	0/1:162,22:31:184:0.120:2	0/1:184,6:32:190:0.032:2	0/1:174,10:32:184:0.054:2	0/1:185,5:33:190:0.026:2	0/1:149,30:32:180:0.168:2	0/1:158,18:32:177:0.102:2
chr1	152192293	rs7520375	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,131:32:131:1.00:2	0/1:0,150:32:150:1.00:2	0/1:23,29:32:52:0.558:2	0/1:104,81:32:185:0.438:2	0/1:0,165:32:166:1.00:2	0/1:2,174:32:176:0.989:2	0/1:84,98:32:183:0.538:2	0/1:79,103:32:182:0.566:2	0/1:0,171:34:171:1.00:2	0/1:87,84:33:171:0.491:2	0/1:2,147:33:149:0.987:2
chr1	152192305	rs60458005	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:122,32:30:154:0.208:2	0/1:114,31:31:145:0.214:2	./.	./.	0/1:183,5:32:188:0.027:2	0/1:167,15:30:182:0.082:2	0/1:185,7:27:192:0.036:2	0/1:189,7:32:196:0.036:2	0/1:179,5:33:184:0.027:2	0/1:160,14:31:175:0.080:2	0/1:153,12:31:165:0.073:2
chr1	152192345	rs201037339	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:146,29:26:175:0.166:2	0/1:108,22:26:130:0.169:2	./.	0/1:175,9:23:184:0.049:2	./.	0/1:174,10:26:184:0.054:2	0/1:172,6:25:178:0.034:2	0/1:173,5:28:178:0.028:2	0/1:183,6:28:189:0.032:2	0/1:165,14:27:179:0.078:2	0/1:164,12:26:176:0.068:2
chr1	152192395	rs61814946	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,74:30:148:0.500:2	./.	./.	./.	./.	./.
chr1	152192398	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,5:33:164:0.030:2	./.	0/1:129,4:34:133:0.030:2	./.
chr1	152192549	rs12145941	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,56:30:128:0.438:2	./.	./.	./.	./.	./.
chr1	152192555	rs41266134	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,52:32:128:0.406:2	./.	./.	0/1:55,63:33:118:0.534:2	0/1:75,68:32:143:0.476:2	./.	0/1:71,56:32:127:0.441:2	./.
chr1	152192631	rs6587647	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,109:33:109:1.00:2	0/1:0,53:32:53:1.00:2	0/1:6,9:32:15:0.600:2	0/1:48,66:33:114:0.579:2	0/1:0,103:32:103:1.00:2	0/1:0,130:32:130:1.00:2	0/1:80,54:32:134:0.403:2	0/1:70,64:32:134:0.478:2	0/1:0,125:33:125:1.00:2	0/1:68,76:33:144:0.528:2	0/1:1,99:33:100:0.990:2
chr1	152192687	rs6587648	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,107:32:107:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,136:32:136:1.00:2	0/1:0,87:31:87:1.00:2	0/1:0,128:32:128:1.00:2	0/1:0,128:32:128:1.00:2	0/1:0,133:32:133:1.00:2	0/1:0,113:33:113:1.00:2	0/1:0,117:32:117:1.00:2	0/1:0,103:32:103:1.00:2
chr1	152192825	rs6666097	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,75:30:78:0.962:2	0/1:4,49:31:53:0.925:2	./.	./.	0/1:35,37:29:72:0.514:2	0/1:39,31:30:70:0.443:2	0/1:24,45:29:69:0.652:2	0/1:36,44:30:80:0.550:2	0/1:42,34:30:77:0.447:2	0/1:34,44:31:78:0.564:2	0/1:30,26:29:56:0.464:2
chr1	152192932	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:32:152:0.026:2
chr1	152192978	rs6587649	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,123:29:123:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,21:28:21:1.00:2	0/1:0,154:29:154:1.00:2	0/1:0,131:29:131:1.00:2	0/1:0,156:29:156:1.00:2	0/1:0,137:29:137:1.00:2	0/1:2,171:29:173:0.988:2	0/1:0,154:29:154:1.00:2	0/1:0,140:29:140:1.00:2	0/1:0,135:29:135:1.00:2
chr1	152193052	rs6587650	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:30:70:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,2:28:2:1.00:2	0/1:0,69:30:69:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,71:30:71:1.00:2	0/1:1,56:30:57:0.982:2	0/1:2,91:30:93:0.978:2	0/1:0,61:30:61:1.00:2	0/1:1,59:30:60:0.983:2	0/1:0,74:30:74:1.00:2
chr1	152193121	rs6587651	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:30:64:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,4:31:4:1.00:2	0/1:40,41:30:81:0.506:2	0/1:0,26:30:26:1.00:2	0/1:0,63:31:63:1.00:2	0/1:22,15:32:37:0.405:2	0/1:45,19:29:64:0.297:2	0/1:0,44:32:44:1.00:2	0/1:33,22:31:55:0.400:2	0/1:1,59:31:60:0.983:2
chr1	152193285	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:95,5:28:100:0.050:2	0/1:46,7:30:53:0.132:2	./.	./.	./.	./.	./.	0/1:120,4:30:124:0.032:2	./.	./.	./.
chr1	152193286	rs7545406	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:8,92:32:100:0.920:2	0/1:9,45:32:54:0.833:2	0/1:5,5:33:10:0.500:2	./.	0/1:62,56:31:118:0.475:2	0/1:76,51:30:127:0.402:2	0/1:68,59:32:127:0.465:2	0/1:66,57:31:123:0.463:2	0/1:79,57:32:136:0.419:2	0/1:73,46:31:119:0.387:2	0/1:51,44:30:95:0.463:2
chr1	152193291	rs6587652	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:7,94:32:101:0.931:2	0/1:8,46:32:54:0.852:2	0/1:5,5:32:10:0.500:2	0/1:64,71:32:135:0.526:2	0/1:6,106:31:112:0.946:2	0/1:5,118:31:123:0.959:2	0/1:68,62:32:130:0.477:2	0/1:64,57:32:121:0.471:2	0/1:3,131:32:134:0.978:2	0/1:68,50:32:118:0.424:2	0/1:5,90:32:95:0.947:2
chr1	152193316	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:114,5:32:119:0.042:2	0/1:54,9:30:63:0.143:2	./.	./.	0/1:126,6:31:132:0.045:2	0/1:141,7:29:148:0.047:2	./.	0/1:152,5:31:157:0.032:2	./.	./.	./.
chr1	152193361	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:125,4:32:129:0.031:2	0/1:58,8:32:66:0.121:2	./.	./.	0/1:107,4:34:111:0.036:2	0/1:124,7:33:131:0.053:2	./.	0/1:152,6:33:158:0.038:2	./.	./.	./.
chr1	152193378	rs199662473	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:30:119:0.034:2	./.	./.	./.	./.	./.
chr1	152193544	rs7535536	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,76:31:77:0.987:2	0/1:0,37:32:37:1.00:2	0/1:5,3:25:8:0.375:2	0/1:53,40:32:93:0.430:2	0/1:2,77:31:79:0.975:2	0/1:0,65:31:65:1.00:2	0/1:37,44:32:81:0.543:2	0/1:61,40:31:101:0.396:2	0/1:0,94:32:94:1.00:2	0/1:34,27:33:61:0.443:2	0/1:0,48:32:48:1.00:2
chr1	152193547	rs6587653	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:32:76:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,78:32:79:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,48:32:48:1.00:2
chr1	152193851	rs11204937	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,122:32:125:0.984:2	0/1:0,74:32:74:1.00:2	0/1:7,5:31:12:0.417:2	0/1:73,63:31:137:0.463:2	0/1:0,91:31:91:1.00:2	0/1:1,100:31:101:0.990:2	0/1:35,49:32:84:0.583:2	0/1:74,65:32:139:0.468:2	0/1:0,129:33:129:1.00:2	0/1:49,56:32:105:0.533:2	0/1:1,150:32:151:0.993:2
chr1	152275960	rs144046718	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,7:29:193:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152276149	rs77422831	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,19:30:37:0.514:2	0/1:92,91:30:183:0.497:2	./.	./.	0/1:101,85:31:187:0.457:2	0/1:104,83:30:187:0.444:2	./.	0/1:97,80:31:178:0.452:2	./.
chr1	152276282	rs55707024	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:39,10:32:49:0.204:2	0/1:158,20:32:179:0.112:2	./.	./.	0/1:156,29:33:186:0.157:2	0/1:157,30:32:188:0.160:2	./.	0/1:159,17:33:176:0.097:2	./.
chr1	152276377	rs139284720	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,5:32:22:0.227:2	0/1:150,39:32:189:0.206:2	./.	./.	0/1:136,49:31:185:0.265:2	0/1:135,55:32:190:0.289:2	./.	0/1:113,25:31:138:0.181:2	./.
chr1	152276386	rs199655799	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:181,6:26:187:0.032:2	./.	./.	./.	./.	./.	./.
chr1	152276459	rs75448155	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,4:30:26:0.154:2	0/1:154,42:30:196:0.214:2	./.	./.	0/1:149,45:31:194:0.232:2	0/1:151,42:31:193:0.218:2	./.	0/1:135,50:32:185:0.270:2	./.
chr1	152276490	rs199933055	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:149,6:33:156:0.039:2	./.	0/1:188,5:33:197:0.026:2	0/1:181,18:33:199:0.090:2	0/1:183,9:28:194:0.047:2	./.	./.	0/1:185,6:33:192:0.031:2	0/1:184,8:33:193:0.042:2	0/1:179,11:30:191:0.058:2
chr1	152276583	rs12083389	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:30,6:31:36:0.167:2	0/1:135,21:32:156:0.135:2	./.	./.	0/1:134,19:31:153:0.124:2	0/1:159,19:32:178:0.107:2	./.	0/1:159,22:31:181:0.122:2	./.
chr1	152276598	rs12742178	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:28,7:30:35:0.200:2	0/1:127,13:30:140:0.093:2	./.	./.	0/1:111,26:32:137:0.190:2	0/1:138,17:31:155:0.110:2	./.	0/1:150,15:31:165:0.091:2	./.
chr1	152276626	rs3126075	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,4:30:23:0.174:2	0/1:117,15:32:133:0.114:2	./.	./.	0/1:83,12:31:95:0.126:2	0/1:121,18:32:139:0.129:2	./.	0/1:134,22:30:156:0.141:2	./.
chr1	152276659	rs7532285	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,5:33:145:0.035:2	./.	./.	0/1:91,9:31:100:0.090:2	0/1:138,13:31:151:0.086:2	./.	0/1:142,9:31:151:0.060:2	./.
chr1	152276660	rs7540123	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,5:32:145:0.035:2	./.	./.	0/1:89,9:30:98:0.092:2	0/1:139,13:31:152:0.086:2	./.	0/1:140,9:31:149:0.060:2	./.
chr1	152276671	rs7518080	C	T,A	.	PASS	AC=4,1;AF=0.267,0.067;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:BQ:DP:FA:SS	./.	./.	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0/1:29:158:0.076:2	./.	0/2:31:149:0.439:2	0/1:29:106:0.132:2	0/1:30:164:0.091:2	./.	0/1:31:149:0.081:2	./.
chr1	152276699	rs12728605	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,8:31:15:0.533:2	0/1:133,33:30:166:0.199:2	./.	./.	0/1:107,19:30:126:0.151:2	0/1:149,40:29:189:0.212:2	./.	0/1:133,41:30:174:0.236:2	./.
chr1	152276772	rs72697000	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,12:28:27:0.444:2	0/1:101,75:30:177:0.426:2	./.	./.	0/1:106,71:29:178:0.401:2	0/1:95,82:29:177:0.463:2	./.	0/1:104,82:30:186:0.441:2	./.
chr1	152276798	rs114892044	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:33:178:0.022:2	./.	./.	./.
chr1	152276871	rs3126066	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,10:28:26:0.385:2	0/1:92,77:28:170:0.456:2	./.	./.	0/1:76,46:29:122:0.377:2	0/1:97,78:28:175:0.446:2	./.	0/1:108,75:28:183:0.410:2	./.
chr1	152276889	rs3126067	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,10:29:27:0.370:2	0/1:94,74:29:169:0.440:2	./.	./.	0/1:63,51:29:114:0.447:2	0/1:99,76:29:175:0.434:2	./.	0/1:99,75:30:174:0.431:2	./.
chr1	152277055	rs2065955	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,12:33:27:0.444:2	0/1:92,91:32:183:0.497:2	./.	./.	0/1:112,71:32:183:0.388:2	0/1:105,86:32:191:0.450:2	./.	0/1:107,82:32:189:0.434:2	./.
chr1	152277115	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,7:30:194:0.036:2	./.
chr1	152277168	rs3091276	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,6:29:22:0.273:2	0/1:119,59:30:178:0.331:2	./.	./.	0/1:125,48:27:174:0.277:2	0/1:107,82:29:189:0.434:2	./.	0/1:111,60:29:172:0.351:2	./.
chr1	152277229	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,5:31:186:0.027:2	./.	./.	./.
chr1	152277248	rs149432670	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,110:30:180:0.611:2	./.
chr1	152277345	rs2065956	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,7:32:17:0.412:2	0/1:75,57:31:132:0.432:2	./.	./.	0/1:98,49:32:147:0.333:2	0/1:89,88:32:177:0.497:2	./.	0/1:66,40:32:106:0.377:2	./.
chr1	152277396	rs6681433	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,9:31:22:0.409:2	0/1:75,43:33:118:0.364:2	./.	./.	0/1:110,57:32:167:0.341:2	0/1:92,94:32:186:0.505:2	./.	0/1:79,49:32:128:0.383:2	./.
chr1	152277554	rs35621145	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:33:177:0.023:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152277690	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,6:30:182:0.033:2	./.	./.	./.
chr1	152277698	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,3:32:24:0.125:2	./.	./.	./.	0/1:142,4:31:147:0.027:2	0/1:182,6:30:189:0.032:2	./.	./.	./.
chr1	152277717	rs9436066	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,8:28:21:0.381:2	0/1:110,76:29:186:0.409:2	./.	./.	0/1:98,71:30:169:0.420:2	0/1:109,72:30:181:0.398:2	./.	0/1:116,70:30:186:0.376:2	./.
chr1	152277790	rs79921407	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:179,5:34:184:0.027:2	./.	./.	0/1:179,4:33:183:0.022:2	./.	./.	./.	./.
chr1	152277822	rs3126069	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:154,9:24:163:0.055:2	./.	./.	./.	./.	./.	0/1:153,8:28:161:0.050:2	./.
chr1	152277826	rs2065957	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:157,11:30:168:0.065:2	./.	./.	0/1:172,9:32:181:0.050:2	0/1:167,12:32:179:0.067:2	./.	0/1:160,10:28:170:0.059:2	./.
chr1	152277884	rs145597576	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:189,5:28:194:0.026:2	./.	./.	./.	0/1:184,11:29:195:0.056:2	./.	0/1:187,8:30:195:0.041:2	./.
chr1	152278306	rs199854301	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:33:177:0.023:2	./.	./.	./.	./.
chr1	152278434	rs61816760	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:117,64:32:181:0.354:2	0/1:109,55:33:166:0.335:2	0/1:28,7:32:35:0.200:2	0/1:165,30:31:195:0.154:2	0/1:38,147:32:187:0.795:2	0/1:125,63:32:188:0.335:2	0/1:166,32:33:198:0.162:2	0/1:161,29:32:191:0.153:2	0/1:122,69:33:193:0.361:2	0/1:160,32:32:193:0.167:2	0/1:63,120:32:183:0.656:2
chr1	152278555	rs80221306	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:55,20:33:75:0.267:2	0/1:156,34:33:190:0.179:2	./.	./.	0/1:157,40:32:197:0.203:2	0/1:159,37:32:196:0.189:2	./.	0/1:153,38:33:192:0.199:2	./.
chr1	152278662	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,8:32:186:0.043:2	./.	0/1:195,4:33:199:0.020:2	./.
chr1	152278670	rs150427834	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,11:32:186:0.059:2	./.	./.	./.
chr1	152278689	rs57672167	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,20:30:33:0.606:2	0/1:96,82:30:178:0.461:2	0/1:189,8:30:197:0.041:2	./.	0/1:60,119:29:179:0.665:2	0/1:76,94:30:170:0.553:2	./.	0/1:100,94:30:194:0.485:2	./.
chr1	152278814	rs2184952	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:53,11:31:64:0.172:2	0/1:163,25:31:188:0.133:2	./.	./.	0/1:142,50:33:192:0.260:2	0/1:150,38:33:188:0.202:2	./.	0/1:161,25:33:186:0.134:2	./.
chr1	152278856	rs11582087	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:39,16:30:55:0.291:2	0/1:155,35:28:191:0.184:2	./.	./.	0/1:148,47:29:195:0.241:2	0/1:149,42:29:191:0.220:2	./.	0/1:154,37:28:191:0.194:2	./.
chr1	152279019	rs57670307	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:78,25:31:103:0.243:2	0/1:163,30:32:193:0.155:2	./.	./.	0/1:165,31:32:196:0.158:2	0/1:145,51:31:196:0.260:2	./.	0/1:162,33:32:195:0.169:2	./.
chr1	152279219	rs149520854	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.	./.
chr1	152279406	rs192116923	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:124,64:33:188:0.340:2	0/1:100,59:32:159:0.371:2	0/1:33,4:32:37:0.108:2	0/1:164,30:32:194:0.155:2	0/1:41,147:32:188:0.782:2	0/1:115,74:32:189:0.392:2	0/1:158,36:32:194:0.186:2	0/1:164,26:32:190:0.137:2	0/1:120,78:32:198:0.394:2	0/1:162,30:32:192:0.156:2	0/1:77,103:32:181:0.572:2
chr1	152279414	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,3:33:33:0.091:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152279527	rs200423945	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:62,14:32:76:0.184:2	0/1:155,37:32:193:0.193:2	./.	./.	0/1:164,32:32:196:0.163:2	0/1:161,35:33:196:0.179:2	./.	0/1:164,22:32:186:0.118:2	./.
chr1	152279663	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:180,5:31:185:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr1	152279729	rs3126072	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,7:30:20:0.350:2	0/1:76,92:30:168:0.548:2	./.	./.	0/1:71,78:31:149:0.523:2	0/1:74,87:30:161:0.540:2	./.	0/1:81,53:31:134:0.396:2	./.
chr1	152279841	rs3126074	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,14:32:22:0.636:2	0/1:69,122:32:193:0.639:2	./.	./.	0/1:86,92:32:178:0.517:2	0/1:75,95:32:170:0.559:2	./.	0/1:96,88:33:184:0.478:2	./.
chr1	152279920	rs55650366	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,8:29:18:0.444:2	0/1:88,98:30:186:0.527:2	./.	./.	0/1:90,98:29:188:0.521:2	0/1:81,107:29:188:0.569:2	./.	0/1:78,88:29:166:0.530:2	./.
chr1	152280032	rs71625200	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,13:29:23:0.565:2	0/1:82,108:30:191:0.568:2	./.	./.	0/1:96,90:29:186:0.484:2	0/1:73,109:29:182:0.599:2	./.	0/1:96,88:30:184:0.478:2	./.
chr1	152280170	rs71625201	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:29,12:32:41:0.293:2	0/1:110,71:32:181:0.392:2	./.	./.	0/1:125,63:32:188:0.335:2	0/1:117,69:32:186:0.371:2	./.	0/1:111,71:32:183:0.390:2	./.
chr1	152280250	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:32:143:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152280265	rs71625202	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,9:32:25:0.360:2	0/1:138,42:32:180:0.233:2	./.	./.	0/1:121,17:31:138:0.123:2	0/1:124,25:31:149:0.168:2	./.	0/1:112,41:32:153:0.268:2	./.
chr1	152280347	rs139476473	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:25,4:30:29:0.138:2	0/1:157,29:30:186:0.156:2	./.	./.	0/1:128,24:30:152:0.158:2	0/1:163,29:30:193:0.151:2	./.	0/1:130,24:29:154:0.156:2	./.
chr1	152280372	rs142776569	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,9:32:31:0.290:2	0/1:140,53:31:193:0.275:2	./.	./.	0/1:130,61:31:191:0.319:2	0/1:136,60:32:196:0.306:2	./.	0/1:126,42:32:168:0.250:2	./.
chr1	152280471	rs78179835	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:49,23:32:72:0.319:2	0/1:135,57:33:192:0.297:2	./.	./.	0/1:134,65:32:199:0.327:2	0/1:129,65:32:194:0.335:2	./.	0/1:148,47:33:195:0.241:2	./.
chr1	152280559	rs150122015	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:30,5:29:35:0.143:2	0/1:129,22:28:151:0.146:2	./.	./.	0/1:115,8:26:123:0.065:2	0/1:142,20:27:162:0.123:2	./.	0/1:132,13:27:145:0.090:2	./.
chr1	152280573	rs76471961	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:131,11:32:142:0.077:2	./.	./.	0/1:110,5:32:115:0.043:2	0/1:148,14:32:162:0.086:2	./.	./.	./.
chr1	152280736	rs78974621	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,14:31:158:0.089:2	./.	./.	./.	0/1:158,11:28:169:0.065:2	./.	0/1:146,12:30:159:0.076:2	./.
chr1	152280759	rs2338554	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:132,28:29:160:0.175:2	./.	./.	0/1:149,8:29:157:0.051:2	0/1:152,18:29:170:0.106:2	./.	0/1:145,20:27:165:0.121:2	./.
chr1	152280782	rs2184953	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,23:32:41:0.561:2	0/1:67,81:33:148:0.547:2	./.	./.	0/1:94,78:32:172:0.453:2	0/1:61,108:33:169:0.639:2	./.	0/1:73,86:32:159:0.541:2	./.
chr1	152280787	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:177,6:34:183:0.033:2	./.	./.	./.	./.	./.	./.
chr1	152280788	rs66954353	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:41,8:31:49:0.163:2	0/1:128,23:32:151:0.152:2	./.	./.	0/1:157,15:31:172:0.087:2	0/1:153,20:31:173:0.116:2	./.	0/1:145,19:32:164:0.116:2	./.
chr1	152280864	rs2184954	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,22:32:41:0.537:2	0/1:87,98:31:185:0.530:2	0/1:187,9:30:196:0.046:2	./.	0/1:84,97:31:181:0.536:2	0/1:84,96:32:180:0.533:2	./.	0/1:96,88:31:184:0.478:2	0/1:175,9:32:184:0.049:2
chr1	152280900	rs74129452	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:41,12:30:53:0.226:2	0/1:142,53:30:195:0.272:2	./.	./.	0/1:130,63:29:193:0.326:2	0/1:129,55:28:184:0.299:2	./.	0/1:139,54:29:193:0.280:2	./.
chr1	152281007	rs7512553	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:37,16:32:53:0.302:2	0/1:126,40:31:166:0.241:2	./.	./.	0/1:121,55:31:176:0.313:2	0/1:130,55:31:186:0.297:2	./.	0/1:123,60:32:183:0.328:2	./.
chr1	152281008	rs7512554	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:37,15:32:52:0.288:2	0/1:125,40:31:165:0.242:2	./.	./.	0/1:121,55:31:176:0.313:2	0/1:131,55:31:186:0.296:2	./.	0/1:124,60:31:184:0.326:2	./.
chr1	152281039	rs7522925	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:26,13:31:39:0.333:2	0/1:136,48:31:184:0.261:2	./.	./.	0/1:114,60:32:174:0.345:2	0/1:123,56:31:179:0.313:2	./.	0/1:116,65:31:181:0.359:2	./.
chr1	152281228	rs7546186	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:27,12:32:39:0.308:2	0/1:135,59:32:194:0.304:2	0/1:173,6:30:179:0.034:2	./.	0/1:140,45:32:185:0.243:2	0/1:135,48:32:183:0.262:2	./.	0/1:124,55:31:179:0.307:2	./.
chr1	152281246	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,5:28:194:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr1	152281290	rs80353812	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:76,5:31:81:0.062:2	0/1:20,5:32:25:0.200:2	0/1:132,61:29:193:0.316:2	./.	./.	0/1:152,42:29:194:0.216:2	0/1:131,53:30:185:0.288:2	./.	0/1:112,52:29:165:0.317:2	0/1:99,6:28:105:0.057:2
chr1	152281304	rs7512857	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,6:31:28:0.214:2	0/1:135,56:29:191:0.293:2	./.	./.	0/1:148,42:29:190:0.221:2	0/1:134,58:30:192:0.302:2	./.	0/1:126,52:31:178:0.292:2	./.
chr1	152281479	rs3126079	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,30:31:42:0.714:2	0/1:57,123:32:180:0.683:2	./.	./.	0/1:57,116:32:174:0.671:2	0/1:69,109:32:178:0.612:2	./.	0/1:56,122:32:178:0.685:2	./.
chr1	152281523	rs80059102	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,11:32:32:0.344:2	0/1:150,37:32:187:0.198:2	./.	./.	0/1:140,35:32:177:0.200:2	0/1:144,39:32:183:0.213:2	./.	0/1:131,37:32:168:0.220:2	./.
chr1	152281534	rs113544881	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,8:32:28:0.286:2	0/1:142,36:32:178:0.202:2	./.	./.	0/1:146,30:32:176:0.170:2	0/1:156,36:31:192:0.188:2	./.	0/1:150,33:32:184:0.180:2	./.
chr1	152281621	rs34806697	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:113,76:30:189:0.402:2	./.	./.	./.	./.	./.	./.	./.
chr1	152281635	rs112627337	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,6:30:194:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr1	152281646	rs144574658	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:183,4:33:187:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr1	152281690	rs12407748	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,7:31:27:0.259:2	0/1:96,92:32:188:0.489:2	./.	./.	0/1:89,98:32:187:0.524:2	0/1:90,82:32:172:0.477:2	./.	0/1:88,88:32:176:0.500:2	./.
chr1	152281948	rs12405241	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,20:30:27:0.741:2	0/1:95,85:31:181:0.472:2	./.	./.	0/1:89,86:31:175:0.491:2	0/1:106,82:31:188:0.436:2	./.	0/1:88,88:30:176:0.500:2	./.
chr1	152282267	rs12405278	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,17:31:28:0.607:2	0/1:80,74:31:154:0.481:2	./.	./.	0/1:85,68:31:153:0.444:2	0/1:117,63:31:180:0.350:2	./.	0/1:56,52:30:108:0.481:2	./.
chr1	152282311	rs12407807	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,18:31:32:0.563:2	0/1:102,77:30:179:0.430:2	./.	./.	0/1:93,81:31:174:0.466:2	0/1:120,72:30:192:0.375:2	./.	0/1:62,71:30:133:0.534:2	./.
chr1	152282596	rs143520776	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,9:31:13:0.692:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152282917	rs11204978	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,15:29:38:0.395:2	0/1:89,94:29:183:0.514:2	./.	./.	0/1:110,80:29:190:0.421:2	0/1:129,57:28:186:0.306:2	./.	0/1:110,73:30:183:0.399:2	./.
chr1	152283193	rs139061200	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:158,5:29:163:0.031:2	./.	0/1:130,5:30:136:0.037:2	./.	./.	./.	0/1:121,6:28:127:0.047:2	./.
chr1	152283236	rs11581433	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:149,5:32:154:0.032:2	./.	0/1:10,4:27:14:0.286:2	0/1:75,68:29:143:0.476:2	./.	0/1:152,5:32:157:0.032:2	0/1:84,59:30:143:0.413:2	0/1:61,78:29:139:0.561:2	./.	0/1:61,53:30:114:0.465:2	./.
chr1	152283283	rs11586631	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,8:30:15:0.533:2	0/1:81,82:30:163:0.503:2	./.	./.	0/1:94,68:30:162:0.420:2	0/1:65,66:30:131:0.504:2	./.	0/1:71,66:29:137:0.482:2	./.
chr1	152283291	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,5:27:177:0.028:2	./.	./.	./.	./.
chr1	152283297	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,5:33:183:0.027:2	./.	./.	./.	./.
chr1	152283604	rs139539067	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,84:31:188:0.447:2	./.
chr1	152283783	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.	./.
chr1	152283862	rs58001094	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,9:33:26:0.346:2	0/1:97,87:32:184:0.473:2	./.	./.	0/1:109,75:32:184:0.408:2	0/1:107,74:31:181:0.409:2	./.	0/1:117,73:31:190:0.384:2	0/1:162,5:33:167:0.030:2
chr1	152283922	rs145475870	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,103:32:183:0.563:2	./.
chr1	152283975	rs66831674	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,5:30:19:0.263:2	0/1:112,59:29:172:0.345:2	./.	./.	0/1:115,35:29:150:0.233:2	0/1:104,55:29:159:0.346:2	./.	0/1:94,57:29:151:0.377:2	./.
chr1	152284377	rs373872833	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:179,5:32:184:0.027:2	./.	./.	0/1:173,5:30:178:0.028:2	0/1:181,9:32:190:0.047:2	./.	./.	./.
chr1	152284424	rs12756586	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:180,8:33:188:0.043:2	./.	./.	0/1:129,11:33:141:0.079:2	0/1:156,13:32:169:0.077:2	./.	0/1:169,16:33:185:0.086:2	0/1:170,6:31:177:0.034:2
chr1	152284450	rs146104019	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:182,8:31:190:0.042:2	./.	./.	0/1:156,6:33:163:0.037:2	0/1:179,6:33:186:0.032:2	./.	0/1:183,7:33:190:0.037:2	./.
chr1	152284478	rs199888588	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,8:29:174:0.046:2	0/1:175,6:31:182:0.033:2	./.	0/1:162,18:28:181:0.100:2	./.
chr1	152284497	rs144437056	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,8:32:187:0.043:2	0/1:180,5:30:185:0.027:2	./.	0/1:172,9:33:181:0.050:2	./.
chr1	152284505	rs201137357	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,8:32:187:0.043:2	0/1:185,5:31:190:0.026:2	./.	0/1:180,6:31:187:0.032:2	./.
chr1	152284524	rs149967165	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,18:31:34:0.529:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152284549	rs141646551	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,6:33:192:0.031:2	./.	./.	0/1:169,18:33:187:0.096:2	0/1:169,10:33:179:0.056:2	./.	0/1:166,15:32:181:0.083:2	0/1:184,4:33:188:0.021:2
chr1	152284678	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,3:31:38:0.079:2	./.	./.	./.	0/1:185,6:33:191:0.031:2	./.	./.	./.	./.
chr1	152284717	rs369239278	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,86:30:191:0.450:2	./.	./.	./.
chr1	152284806	rs71625190	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,8:32:186:0.043:2	0/1:186,6:32:192:0.031:2	./.	0/1:159,9:32:168:0.054:2	./.
chr1	152284814	rs71625191	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,5:32:188:0.027:2	0/1:190,5:31:195:0.026:2	./.	0/1:180,6:33:187:0.032:2	./.
chr1	152284823	rs74129459	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,6:23:191:0.032:2	./.	0/1:187,4:33:191:0.021:2	./.
chr1	152284854	rs3120653	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,12:29:32:0.375:2	0/1:92,94:29:186:0.505:2	./.	./.	0/1:95,94:29:189:0.497:2	0/1:91,96:29:187:0.513:2	./.	0/1:104,83:30:187:0.444:2	./.
chr1	152285020	rs138055273	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,5:31:162:0.031:2
chr1	152285067	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,9:24:155:0.058:2
chr1	152285071	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:32:163:0.025:2	0/1:146,10:27:156:0.064:2
chr1	152285099	rs74129461	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,11:32:29:0.379:2	0/1:93,79:31:172:0.459:2	./.	./.	0/1:103,53:32:156:0.340:2	0/1:123,46:31:169:0.272:2	./.	0/1:104,63:31:167:0.377:2	./.
chr1	152285113	rs150957860	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:133,11:31:144:0.076:2	0/1:84,7:30:91:0.077:2	./.	./.	./.	0/1:150,8:27:158:0.051:2	./.	./.	0/1:146,7:31:153:0.046:2	0/1:151,7:31:158:0.044:2	0/1:129,8:32:137:0.058:2
chr1	152285117	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:32:153:0.026:2	./.
chr1	152285119	rs201522026	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:125,13:31:139:0.094:2	0/1:83,8:31:91:0.088:2	./.	0/1:151,7:32:158:0.044:2	./.	0/1:144,8:29:152:0.053:2	0/1:155,5:31:160:0.031:2	0/1:164,12:31:176:0.068:2	0/1:138,8:32:146:0.055:2	0/1:143,12:31:155:0.077:2	0/1:125,4:32:129:0.031:2
chr1	152285122	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:32:151:0.026:2	./.
chr1	152285137	rs3120654	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:122,12:31:134:0.090:2	0/1:87,8:31:95:0.084:2	./.	0/1:152,10:30:162:0.062:2	./.	0/1:141,7:30:148:0.047:2	0/1:145,10:28:155:0.065:2	0/1:157,16:30:173:0.092:2	0/1:133,9:32:142:0.063:2	0/1:119,12:30:132:0.092:2	0/1:131,7:31:138:0.051:2
chr1	152285188	rs3120655	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,6:28:154:0.039:2	0/1:148,5:31:153:0.033:2	./.	./.	0/1:139,4:31:143:0.028:2
chr1	152285195	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:31:153:0.026:2	./.	./.	./.	./.
chr1	152285327	rs113685999	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:32:188:0.021:2
chr1	152285358	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,6:29:196:0.031:2	0/1:189,6:28:195:0.031:2	./.	./.	./.
chr1	152285370	rs113652604	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2	./.	./.	./.	./.	./.	0/1:188,7:32:195:0.036:2
chr1	152285405	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:182,4:33:186:0.022:2	./.	0/1:184,4:32:188:0.021:2	./.	./.	./.	./.	./.
chr1	152285425	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:181,5:30:187:0.027:2	./.	./.	./.	0/1:187,5:31:192:0.026:2	./.	./.	./.
chr1	152285844	rs146928262	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,5:27:176:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152285930	rs11584340	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,11:31:32:0.344:2	0/1:98,87:31:185:0.470:2	./.	./.	0/1:102,86:31:188:0.457:2	0/1:95,97:31:192:0.505:2	./.	0/1:93,90:31:183:0.492:2	./.
chr1	152285959	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,5:32:186:0.027:2	./.	./.
chr1	152286002	rs2011331	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,18:30:38:0.474:2	0/1:91,89:29:181:0.494:2	./.	./.	0/1:103,80:30:183:0.437:2	0/1:99,94:29:193:0.487:2	./.	0/1:95,86:29:181:0.475:2	./.
chr1	152286032	rs11588170	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,17:31:36:0.472:2	0/1:96,90:30:186:0.484:2	./.	./.	0/1:103,88:31:191:0.461:2	0/1:101,89:31:190:0.468:2	./.	0/1:89,88:31:177:0.497:2	./.
chr1	152286126	rs11582620	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,55:30:139:0.396:2	./.	./.	./.	0/1:83,41:31:124:0.331:2	./.	0/1:51,44:29:95:0.463:2
chr1	152286367	rs41267154	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,13:31:35:0.371:2	0/1:95,76:30:171:0.444:2	./.	./.	0/1:82,63:31:145:0.434:2	0/1:101,74:31:175:0.423:2	./.	0/1:78,71:30:150:0.477:2	./.
chr1	152323132	rs12568784	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,12:31:30:0.400:2	./.	./.	./.	0/1:111,86:31:197:0.437:2	0/1:120,79:31:199:0.397:2	./.	0/1:108,87:31:195:0.446:2	./.
chr1	152324099	rs77345168	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:169,4:35:173:0.023:2	./.	./.	./.	./.	./.	./.
chr1	152324146	rs141276572	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:31:166:0.024:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152325732	rs12022217	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,15:32:28:0.536:2	./.	./.	./.	0/1:82,69:31:151:0.457:2	0/1:101,71:31:172:0.413:2	./.	0/1:82,99:31:181:0.547:2	./.
chr1	152325874	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:33:191:0.021:2	./.
chr1	152325884	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:33:188:0.021:2	./.
chr1	152325990	rs140606934	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:104,6:33:110:0.055:2	./.	0/1:177,5:28:182:0.027:2	./.	./.	0/1:161,5:31:166:0.030:2	./.	./.	./.	0/1:178,5:30:183:0.027:2
chr1	152326013	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:34:145:0.028:2	./.	./.	./.	./.
chr1	152327389	rs12411129	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,29:28:106:0.276:2	0/1:48,13:30:61:0.213:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152327469	rs76514540	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:32:14:0.500:2	./.	./.	./.	0/1:93,43:32:136:0.316:2	0/1:114,39:32:153:0.255:2	./.	0/1:96,38:31:134:0.284:2	./.
chr1	152327502	rs138997916	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:31:10:0.300:2	./.	./.	./.	0/1:107,17:32:124:0.137:2	0/1:132,12:31:144:0.083:2	./.	0/1:95,20:32:116:0.174:2	./.
chr1	152327526	rs12758283	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:32:117:0.034:2	./.	./.	0/1:88,4:33:92:0.043:2	./.
chr1	152327607	rs12758450	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,20:31:128:0.156:2	0/1:71,12:32:83:0.145:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152327633	rs144938115	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,45:32:167:0.269:2	0/1:65,22:32:87:0.253:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152327667	rs12738471	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,8:33:188:0.043:2	0/1:168,8:30:176:0.045:2	./.	0/1:135,10:32:145:0.069:2	./.
chr1	152327810	rs201979853	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:165,4:32:169:0.024:2	0/1:110,4:32:114:0.035:2	0/1:16,3:33:19:0.158:2	./.	./.	./.	./.	0/1:174,5:32:179:0.028:2	./.	0/1:174,6:32:180:0.033:2	./.
chr1	152327955	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:164,5:32:169:0.030:2	./.	./.	./.	0/1:162,5:29:167:0.030:2	./.	./.	./.	./.	./.	0/1:175,4:32:179:0.022:2
chr1	152327982	rs369481025	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:33:172:0.023:2
chr1	152328059	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:31:152:0.026:2
chr1	152328151	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:32:183:0.022:2	./.	./.	./.	./.
chr1	152328411	rs6679449	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,3:33:22:0.136:2	./.	./.	./.	0/1:116,21:31:137:0.153:2	0/1:125,32:33:157:0.204:2	./.	0/1:93,42:33:135:0.311:2	0/1:179,5:33:184:0.027:2
chr1	152328507	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,5:29:160:0.031:2
chr1	152328515	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:31:163:0.025:2
chr1	152329369	rs2282302	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,28:32:79:0.354:2	./.	0/1:50,44:32:94:0.468:2	./.	./.	0/1:58,49:34:107:0.458:2	./.	./.
chr1	152329435	rs2282303	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:31:8:0.375:2	./.	./.	./.	0/1:48,36:32:84:0.429:2	0/1:47,37:32:84:0.440:2	./.	0/1:45,30:32:75:0.400:2	./.
chr1	152331240	rs3818831	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,11:30:15:0.733:2	./.	./.	./.	0/1:22,21:31:43:0.488:2	0/1:33,37:31:70:0.529:2	./.	0/1:30,18:31:48:0.375:2	./.
chr1	152382120	rs3829868	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,9:32:12:0.750:2	./.	./.	./.	0/1:75,45:32:121:0.375:2	0/1:52,55:32:107:0.514:2	./.	0/1:0,60:32:60:1.00:2	./.
chr1	152484129	rs2105117	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,70:30:70:1.00:2	0/1:0,24:31:24:1.00:2	./.	0/1:40,41:28:81:0.506:2	0/1:0,28:29:28:1.00:2	0/1:0,70:29:70:1.00:2	0/1:37,21:30:58:0.362:2	0/1:2,60:29:62:0.968:2	0/1:20,19:29:39:0.487:2	0/1:0,44:30:44:1.00:2	0/1:29,26:30:55:0.473:2
chr1	152484505	rs61813870	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,80:32:174:0.460:2	./.	./.	./.	./.
chr1	152487979	rs2282296	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:30:3:1.00:2	0/1:0,5:30:5:1.00:2	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	./.
chr1	152488063	rs1053588	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,6:30:6:1.00:2	0/1:0,2:31:2:1.00:2	./.	0/1:0,3:31:3:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,6:31:6:1.00:2	./.	0/1:0,5:32:5:1.00:2	./.	0/1:0,2:31:2:1.00:2	0/1:0,3:32:3:1.00:2
chr1	152488428	rs1053590	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:32:33:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,9:33:9:1.00:2	0/1:18,12:32:30:0.400:2	0/1:0,29:33:29:1.00:2	0/1:0,55:32:55:1.00:2	0/1:19,16:33:35:0.457:2	0/1:0,41:32:41:1.00:2	0/1:33,22:33:55:0.400:2	0/1:0,31:31:31:1.00:2	0/1:27,33:31:60:0.550:2
chr1	152538557	rs202162896	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,5:30:73:0.068:2	./.	./.	./.	./.	0/1:62,4:30:66:0.061:2	./.	./.
chr1	152552285	rs512208	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,8:31:14:0.571:2	0/1:7,86:30:93:0.925:2	0/1:24,36:30:60:0.600:2	./.	./.	0/1:52,48:31:100:0.480:2	0/1:32,29:31:61:0.475:2	./.	./.
chr1	152586354	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:34:76:0.053:2	./.	./.
chr1	152586440	rs143382064	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,26:32:26:1.00:2
chr1	152595528	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:30:96:0.042:2	./.	./.	./.
chr1	152636843	rs9793541	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,18:30:18:1.00:2	0/1:6,7:30:13:0.538:2	./.	./.	0/1:7,5:28:12:0.417:2	0/1:9,9:29:18:0.500:2	./.	./.
chr1	152648491	rs12073860	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:33:35:0.114:2	./.	./.	./.	./.	./.
chr1	152648675	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,4:31:52:0.077:2	./.	./.	./.	./.	./.	./.	./.
chr1	152659805	rs41310873	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,6:31:7:0.857:2	0/1:2,53:31:55:0.964:2	0/1:11,12:30:23:0.522:2	./.	./.	0/1:15,33:30:48:0.688:2	0/1:16,20:31:36:0.556:2	./.	./.
chr1	152659848	rs41308367	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,5:32:6:0.833:2	0/1:1,39:32:40:0.975:2	0/1:3,8:31:11:0.727:2	./.	./.	0/1:2,12:32:14:0.857:2	0/1:6,6:33:12:0.500:2	./.	./.
chr1	152671385	rs80271068	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,14:31:34:0.412:2	0/1:10,7:30:17:0.412:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152671387	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,17:33:41:0.415:2
chr1	152671388	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,17:33:41:0.415:2
chr1	152681603	rs41268472	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,35:33:85:0.412:2	0/1:43,28:33:71:0.394:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152692074	rs1332500	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,6:31:9:0.667:2	0/1:0,116:30:116:1.00:2	0/1:65,77:30:142:0.542:2	./.	0/1:88,64:30:153:0.421:2	0/1:54,65:31:119:0.546:2	0/1:64,43:32:107:0.402:2	./.	./.
chr1	152692271	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,73:32:157:0.465:2	./.	./.	./.	./.	./.	./.	./.
chr1	152692472	rs873775	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,7:33:14:0.500:2	0/1:0,120:32:120:1.00:2	0/1:68,61:31:129:0.473:2	./.	0/1:67,58:32:125:0.464:2	0/1:85,67:31:152:0.441:2	0/1:67,71:33:138:0.514:2	./.	./.
chr1	152692512	rs41268474	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,37:31:91:0.407:2	0/1:24,22:31:46:0.478:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152692588	rs944682	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,6:30:17:0.353:2	0/1:1,143:29:144:0.993:2	0/1:52,71:29:123:0.577:2	./.	0/1:60,65:28:125:0.520:2	0/1:68,58:28:126:0.460:2	0/1:72,66:29:138:0.478:2	./.	./.
chr1	152692781	rs3814350	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,7:31:15:0.467:2	0/1:0,125:30:125:1.00:2	0/1:111,61:31:172:0.355:2	./.	0/1:98,74:30:172:0.430:2	0/1:109,70:30:179:0.391:2	0/1:89,65:32:154:0.422:2	./.	./.
chr1	152692803	rs41268476	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:32:11:0.455:2	./.	./.	0/1:63,58:33:121:0.479:2	./.	./.	./.	./.	0/1:88,72:33:160:0.450:2
chr1	152692862	rs3814351	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,5:33:17:0.294:2	0/1:0,85:32:85:1.00:2	0/1:58,42:32:100:0.420:2	./.	0/1:87,34:32:121:0.281:2	0/1:87,39:32:126:0.310:2	0/1:81,54:33:135:0.400:2	./.	./.
chr1	152732106	rs17612167	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,91:31:188:0.484:2	0/1:94,76:30:170:0.447:2	./.	0/1:111,75:31:186:0.403:2	./.	0/1:98,64:31:162:0.395:2	0/1:87,75:32:162:0.463:2
chr1	152732174	rs944683	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,69:32:149:0.463:2	0/1:36,54:32:90:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152732436	rs4845480	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:106,75:32:181:0.414:2	0/1:90,71:32:161:0.441:2	0/1:0,35:32:35:1.00:2	0/1:1,188:32:189:0.995:2	0/1:88,104:32:192:0.542:2	0/1:102,90:32:192:0.469:2	0/1:105,86:33:191:0.450:2	0/1:109,84:33:193:0.435:2	0/1:115,78:33:193:0.404:2	./.	0/1:103,91:33:194:0.469:2
chr1	152732567	rs16834461	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,58:31:118:0.492:2	0/1:42,35:32:77:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152732955	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,10:14:39:0.256:2	./.	./.	./.	0/1:31,14:12:45:0.311:2	./.	0/1:34,7:20:41:0.171:2
chr1	152733301	rs4329520	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,73:32:154:0.474:2	0/1:37,50:32:87:0.575:2	0/1:0,22:32:22:1.00:2	0/1:0,182:32:182:1.00:2	0/1:113,83:31:196:0.423:2	0/1:100,80:32:180:0.444:2	0/1:108,84:32:192:0.438:2	0/1:106,82:31:188:0.436:2	0/1:93,89:32:182:0.489:2	./.	0/1:92,67:32:159:0.421:2
chr1	152734187	rs11581045	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:29:10:1.00:2	0/1:0,84:29:84:1.00:2	0/1:43,35:28:78:0.449:2	0/1:59,25:29:84:0.298:2	0/1:62,34:29:96:0.354:2	0/1:49,42:29:92:0.462:2	0/1:51,53:29:104:0.510:2	./.	0/1:60,26:29:86:0.302:2
chr1	152734390	rs2297487	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,58:31:130:0.446:2	0/1:56,45:32:101:0.446:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152748982	rs1758785	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,6:30:43:0.140:2	./.	./.	./.	./.
chr1	152749008	rs200931119	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,5:33:47:0.106:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152749022	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,3:32:25:0.125:2	./.	./.	./.	./.
chr1	152749063	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,8:30:27:0.296:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152749066	rs200400135	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,8:28:28:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152749072	rs201433041	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,8:31:32:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152749091	rs41268480	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,7:29:12:0.583:2	0/1:8,27:29:35:0.771:2	./.	0/1:4,10:29:15:0.714:2	./.	0/1:12,15:31:27:0.556:2	0/1:4,3:29:7:0.429:2
chr1	152759950	rs11205106	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,16:29:39:0.410:2	0/1:21,13:30:34:0.382:2	0/1:0,9:30:9:1.00:2	0/1:0,35:30:35:1.00:2	0/1:26,12:27:38:0.316:2	0/1:34,26:29:60:0.433:2	0/1:21,12:28:33:0.364:2	0/1:37,22:30:61:0.373:2	0/1:25,24:30:50:0.490:2	./.	0/1:3,34:29:37:0.919:2
chr1	152760075	rs201660535	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,14:29:140:0.100:2	0/1:72,6:28:78:0.077:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,6:28:145:0.041:2
chr1	152760093	rs112600788	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,10:30:167:0.060:2	0/1:101,6:31:107:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,7:33:190:0.037:2
chr1	152760096	rs115864544	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,10:31:172:0.058:2	0/1:105,5:31:110:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,7:32:189:0.037:2
chr1	152760106	rs56313719	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,66:32:198:0.333:2	./.	./.	./.
chr1	152760352	rs61814474	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,48:30:196:0.246:2	0/1:123,72:30:195:0.369:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,73:30:195:0.374:2
chr1	152760393	rs75873017	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,9:32:17:0.529:2	./.	./.	0/1:188,7:31:195:0.036:2	0/1:191,7:26:198:0.035:2	0/1:182,7:31:189:0.037:2	./.	./.
chr1	152760400	rs74994203	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:28:12:0.250:2	./.	./.	0/1:192,5:32:197:0.025:2	0/1:193,5:29:198:0.025:2	./.	./.	./.
chr1	152760558	rs114470093	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,28:32:144:0.194:2	0/1:87,18:32:105:0.171:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,32:33:94:0.340:2
chr1	152760628	rs12038374	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,11:33:86:0.128:2	0/1:51,10:33:61:0.164:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,12:34:33:0.364:2
chr1	152760651	rs12048712	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,8:32:73:0.110:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,3:31:22:0.136:2
chr1	152770446	rs7527180	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.	./.	./.	./.	0/1:6,3:32:9:0.333:2
chr1	152770503	rs41268490	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,10:31:57:0.175:2	0/1:24,6:32:30:0.200:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152770521	rs41268492	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,73:31:100:0.730:2	0/1:29,36:32:65:0.554:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,24:32:24:1.00:2
chr1	152770533	rs41268494	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,52:31:141:0.369:2	0/1:54,26:31:80:0.325:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,25:31:45:0.556:2
chr1	152770589	rs11485496	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:50,132:28:183:0.725:2	0/1:61,128:27:189:0.677:2	./.	0/1:1,5:27:6:0.833:2	./.	./.	./.	./.	./.	./.	0/1:2,189:25:191:0.990:2
chr1	152770828	rs115138530	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:113,6:33:119:0.050:2	0/1:117,5:32:122:0.041:2	0/1:0,25:33:25:1.00:2	0/1:1,182:33:183:0.995:2	0/1:114,57:33:171:0.333:2	0/1:122,74:32:196:0.378:2	0/1:142,55:32:198:0.279:2	0/1:139,58:33:197:0.294:2	0/1:128,64:33:192:0.333:2	./.	0/1:0,107:32:108:1.00:2
chr1	152771040	rs1610464	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,5:27:113:0.044:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152771207	rs11205108	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,34:31:68:0.500:2	0/1:27,15:30:42:0.357:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,37:30:80:0.463:2
chr1	152771293	rs2065206	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,8:32:26:0.308:2	0/1:9,6:32:15:0.400:2	0/1:0,6:31:6:1.00:2	0/1:0,45:32:45:1.00:2	0/1:17,12:31:29:0.414:2	0/1:22,18:31:40:0.450:2	0/1:5,13:30:18:0.722:2	0/1:10,11:32:21:0.524:2	0/1:12,15:33:27:0.556:2	./.	0/1:0,25:31:25:1.00:2
chr1	152771360	rs11205109	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,13:32:38:0.342:2	0/1:7,8:31:15:0.533:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,19:32:35:0.543:2
chr1	152777838	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:32:82:0.049:2	./.	./.	./.	0/1:56,6:33:63:0.097:2	./.
chr1	152777868	rs36107483	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:25:5:1.00:2	0/1:0,42:31:42:1.00:2	0/1:24,18:28:42:0.429:2	0/1:43,20:31:63:0.317:2	0/1:25,22:28:47:0.468:2	0/1:30,29:29:59:0.492:2	0/1:27,22:30:49:0.449:2	./.	0/1:30,20:30:51:0.400:2
chr1	152777908	rs2006940	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,16:26:42:0.381:2	0/1:19,10:29:29:0.345:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,38:26:68:0.559:2
chr1	152777964	rs17624493	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,12:31:12:1.00:2	0/1:0,62:32:62:1.00:2	0/1:25,38:32:63:0.603:2	0/1:54,27:32:81:0.333:2	0/1:44,30:32:74:0.405:2	0/1:57,36:32:93:0.387:2	0/1:31,39:33:70:0.557:2	./.	0/1:35,38:33:73:0.521:2
chr1	152785170	rs56056379	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,22:29:55:0.400:2	./.	./.	./.	./.	0/1:18,22:31:40:0.550:2
chr1	152856935	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,4:32:80:0.050:2	./.	./.	./.	./.	./.	./.
chr1	152882574	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,4:34:34:0.118:2	./.	./.	./.
chr1	152882610	rs2229496	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,23:33:54:0.426:2	./.	./.	./.	./.	./.	./.	./.
chr1	152882979	rs17855670	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,6:31:24:0.250:2	0/1:19,4:32:23:0.174:2	0/1:24,6:32:30:0.200:2	0/1:25,4:30:29:0.138:2	./.	./.	0/1:14,3:32:17:0.176:2
chr1	152882981	rs62637699	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,6:32:26:0.231:2	0/1:19,4:32:23:0.174:2	0/1:25,6:30:31:0.194:2	0/1:26,4:32:30:0.133:2	./.	./.	0/1:17,3:33:20:0.150:2
chr1	152882982	rs7520711	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:31:13:0.385:2	0/1:19,7:31:26:0.269:2	0/1:19,4:32:23:0.174:2	0/1:25,6:32:31:0.194:2	0/1:24,6:32:30:0.200:2	./.	./.	0/1:17,3:31:20:0.150:2
chr1	152883051	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,22:31:52:0.423:2	./.	./.	./.	./.	./.	./.	./.
chr1	152883056	rs45609438	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:36:77:0.052:2	0/1:92,6:31:98:0.061:2	./.	./.	./.	./.
chr1	152883063	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:33:104:0.038:2	./.	./.	./.	./.
chr1	152883164	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:27:67:0.060:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152883532	rs201506560	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:74,7:21:81:0.086:2	0/1:48,8:17:57:0.143:2	./.	0/1:73,11:17:84:0.131:2	./.	./.	0/1:27,8:23:35:0.229:2
chr1	152883608	rs7545413	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,39:30:83:0.470:2	./.	./.	./.	./.	./.	./.	./.
chr1	152883680	rs7535306	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,47:32:90:0.522:2	./.	./.	./.	./.	./.	./.	./.
chr1	152883711	rs7545520	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,32:33:63:0.508:2	./.	./.	./.	./.	./.	./.	./.
chr1	152884111	rs913996	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,43:31:83:0.524:2	./.	./.	./.	./.	./.	./.	./.
chr1	152884226	rs41272534	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,32:32:58:0.552:2	0/1:13,15:32:28:0.536:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	152884246	rs12407682	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,32:31:75:0.427:2	./.	./.	./.	0/1:72,4:30:76:0.053:2	./.	./.	./.
chr1	152884247	rs12406539	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,33:32:75:0.440:2	./.	./.	./.	0/1:75,4:28:79:0.051:2	./.	./.	./.
chr1	152944556	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,4:32:138:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr1	152944594	rs3170863	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,18:30:29:0.621:2	0/1:92,70:29:162:0.432:2	0/1:92,76:29:168:0.452:2	0/1:1,184:29:185:0.995:2	0/1:102,93:29:195:0.477:2	./.	0/1:103,81:30:184:0.440:2	0/1:78,70:29:149:0.473:2	0/1:2,159:30:163:0.988:2
chr1	152957793	rs200895784	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:34:127:0.031:2	./.	./.	./.	./.	./.
chr1	152957832	rs1611762	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,27:30:79:0.342:2	0/1:66,33:30:99:0.333:2	0/1:7,99:30:107:0.934:2	0/1:41,39:30:80:0.488:2	0/1:105,5:31:110:0.045:2	0/1:32,28:30:60:0.467:2	0/1:36,20:32:56:0.357:2	0/1:3,52:31:55:0.945:2
chr1	152957887	rs1611764	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,41:31:83:0.494:2	0/1:53,30:31:83:0.361:2	0/1:3,80:30:83:0.964:2	0/1:35,41:31:76:0.539:2	./.	0/1:31,27:31:58:0.466:2	0/1:32,19:32:51:0.373:2	0/1:2,38:30:40:0.950:2
chr1	152958165	rs1611768	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,78:32:150:0.520:2	./.	./.	./.	./.	./.	./.	./.
chr1	152958238	rs1129654	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:145,4:33:149:0.027:2	./.	0/1:9,16:33:25:0.640:2	0/1:108,67:32:175:0.383:2	0/1:76,45:32:121:0.372:2	0/1:1,131:32:133:0.992:2	0/1:102,77:32:179:0.430:2	0/1:194,4:33:198:0.020:2	0/1:124,67:33:191:0.351:2	0/1:90,66:32:156:0.423:2	0/1:2,163:32:167:0.988:2
chr1	152958267	rs1129655	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:135,4:34:139:0.029:2	./.	0/1:4,10:32:14:0.714:2	0/1:102,59:32:161:0.366:2	0/1:80,46:32:126:0.365:2	0/1:2,133:32:135:0.985:2	0/1:88,76:33:164:0.463:2	./.	0/1:117,65:34:182:0.357:2	0/1:88,55:33:143:0.385:2	0/1:2,169:33:171:0.988:2
chr1	152975495	rs2075739	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,5:31:13:0.385:2	0/1:83,59:31:142:0.415:2	0/1:61,28:30:89:0.315:2	0/1:0,97:31:97:1.00:2	0/1:76,63:32:139:0.453:2	./.	0/1:81,59:32:140:0.421:2	0/1:70,32:30:102:0.314:2	0/1:0,127:32:127:1.00:2
chr1	152975715	rs28989168	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,8:28:47:0.170:2	0/1:28,11:30:39:0.282:2	0/1:20,20:30:40:0.500:2	./.	./.	./.	0/1:31,11:31:43:0.262:2	0/1:17,26:28:45:0.605:2
chr1	152975739	rs17851565	T	A,C	.	PASS	AC=5,1;AF=0.278,0.056;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	0/2:24:29:0.345:2	./.	0/1:30:69:0.092:2	./.	0/1:30:50:0.160:2	0/1:32:51:0.060:2	./.	./.	0/1:28:40:0.105:2	0/1:31:38:0.189:2
chr1	152975763	rs1977734	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,32:30:84:0.386:2	0/1:38,30:31:68:0.441:2	0/1:0,75:31:75:1.00:2	0/1:34,34:30:68:0.500:2	./.	0/1:20,36:32:57:0.643:2	0/1:31,27:31:59:0.466:2	0/1:1,44:31:46:0.978:2
chr1	152975810	rs72704847	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,47:32:105:0.448:2	./.	./.	./.	./.
chr1	152975829	rs1970328	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,8:33:10:0.800:2	0/1:98,73:33:171:0.427:2	0/1:95,89:33:184:0.484:2	0/1:0,146:32:146:1.00:2	0/1:75,70:33:145:0.483:2	./.	0/1:72,82:34:154:0.532:2	0/1:53,52:32:105:0.495:2	0/1:0,116:33:116:1.00:2
chr1	152975941	rs1055935	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,9:32:16:0.563:2	0/1:73,70:31:143:0.490:2	0/1:76,71:31:147:0.483:2	./.	0/1:74,73:32:147:0.497:2	0/1:189,4:34:193:0.021:2	0/1:70,65:33:135:0.481:2	0/1:84,67:32:151:0.444:2	0/1:0,165:32:165:1.00:2
chr1	152976108	rs1015996	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,20:30:81:0.250:2	0/1:29,18:29:47:0.383:2	0/1:0,60:29:60:1.00:2	0/1:50,25:29:75:0.333:2	./.	0/1:46,39:31:85:0.459:2	0/1:37,32:29:69:0.464:2	0/1:0,75:30:75:1.00:2
chr1	152976114	rs1015995	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,2:35:5:0.400:2	0/1:56,20:32:77:0.263:2	0/1:30,17:30:47:0.362:2	0/1:0,64:31:64:1.00:2	0/1:46,23:31:69:0.333:2	./.	0/1:51,39:32:90:0.433:2	0/1:34,30:32:64:0.469:2	0/1:0,76:32:77:1.00:2
chr1	152976306	rs1134220	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,27:33:64:0.422:2	0/1:26,8:34:36:0.235:2	0/1:2,42:32:44:0.955:2	0/1:15,9:30:24:0.375:2	./.	0/1:27,15:33:42:0.357:2	0/1:24,23:33:47:0.489:2	0/1:0,57:32:57:1.00:2
chr1	153004848	rs3795381	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,27:32:111:0.243:2	0/1:82,61:31:143:0.427:2	0/1:6,85:32:91:0.934:2	0/1:121,44:32:165:0.267:2	./.	0/1:92,30:32:122:0.246:2	0/1:80,31:33:111:0.279:2	0/1:0,63:31:63:1.00:2
chr1	153004853	rs3795382	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,31:30:110:0.282:2	0/1:80,63:29:143:0.441:2	0/1:5,86:30:92:0.945:2	0/1:112,46:31:158:0.291:2	./.	0/1:90,29:31:119:0.244:2	0/1:75,33:29:109:0.306:2	0/1:0,61:29:61:1.00:2
chr1	153004983	rs12195	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:33:6:0.667:2	0/1:54,56:31:111:0.509:2	0/1:2,50:32:52:0.962:2	0/1:1,97:31:98:0.990:2	0/1:60,50:32:110:0.455:2	0/1:130,8:32:138:0.058:2	0/1:42,51:32:93:0.548:2	0/1:41,34:33:75:0.453:2	0/1:0,75:32:75:1.00:2
chr1	153005013	rs2339500	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,11:31:67:0.167:2	./.	./.	./.	./.	./.	./.
chr1	153005156	rs2711	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,55:31:117:0.474:2	0/1:49,59:31:108:0.546:2	0/1:0,103:31:103:1.00:2	0/1:60,58:32:118:0.492:2	./.	0/1:67,72:32:139:0.518:2	0/1:48,54:32:102:0.529:2	0/1:0,141:32:142:1.00:2
chr1	153029137	rs3737864	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:31:10:0.500:2	./.	0/1:48,20:29:68:0.294:2	0/1:10,51:30:61:0.836:2	0/1:50,27:31:77:0.351:2	./.	0/1:30,28:32:58:0.483:2	0/1:47,22:31:69:0.319:2	0/1:24,53:31:77:0.688:2
chr1	153043241	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,4:32:77:0.052:2	0/1:64,5:31:69:0.072:2	0/1:54,6:31:60:0.100:2	./.	0/1:68,9:33:77:0.117:2	./.	0/1:78,8:30:86:0.093:2
chr1	153066072	rs3737865	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:74,25:33:100:0.253:2	0/1:61,27:33:88:0.307:2	./.	./.	0/1:80,81:33:161:0.503:2	./.	./.	./.	./.	./.	./.
chr1	153066098	rs200356708	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,20:31:97:0.206:2	0/1:53,15:31:68:0.221:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	153066113	rs199729907	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,14:31:81:0.173:2	0/1:45,11:32:56:0.196:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	153066153	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:31:57:0.070:2	./.	./.	./.	0/1:64,5:31:69:0.072:2
chr1	153085080	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:177,7:27:184:0.038:2	./.	./.	./.	./.	./.	./.
chr1	153085152	rs151137674	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,18:29:85:0.212:2	0/1:39,12:32:51:0.235:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	153190819	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,28:33:63:0.444:2	./.	./.	./.	./.
chr1	153191287	rs144964467	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,26:30:62:0.419:2	0/1:24,26:31:50:0.520:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	153191512	rs10788862	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:30:12:0.417:2	./.	./.	./.	0/1:25,22:31:47:0.468:2	0/1:23,35:32:58:0.603:2	0/1:0,59:32:59:1.00:2	0/1:15,29:31:44:0.659:2	./.
chr1	153233506	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,5:31:6:0.833:2	./.	./.
chr1	153233510	rs6661601	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:32:4:1.00:2	0/1:0,3:30:3:1.00:2	./.	./.	0/1:8,4:31:12:0.333:2	0/1:10,3:31:13:0.231:2	./.	./.	0/1:2,5:33:7:0.714:2	./.	./.
chr1	153233697	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.
chr1	153233701	rs1143390	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:29:5:0.800:2	./.	./.	./.	./.
chr1	153234295	rs12043009	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,14:31:25:0.560:2	0/1:1,27:31:28:0.964:2	0/1:0,33:30:33:1.00:2	0/1:11,7:30:18:0.389:2	./.
chr1	153234503	rs139020547	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,49:31:89:0.551:2	./.	./.	./.	./.	./.	./.	./.
chr1	153277423	rs843971	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,38:32:66:0.576:2	0/1:29,30:33:59:0.508:2	0/1:4,8:33:12:0.667:2	0/1:3,111:33:114:0.974:2	./.	0/1:63,65:32:128:0.508:2	0/1:70,54:32:124:0.435:2	0/1:70,49:32:119:0.412:2	0/1:44,35:34:79:0.443:2	0/1:47,36:32:83:0.434:2	./.
chr1	153279596	rs148550417	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,43:32:95:0.453:2	./.	./.	./.	./.	./.	./.
chr1	153279621	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:31:90:0.044:2
chr1	153279696	rs55991125	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,31:30:63:0.492:2	0/1:14,14:29:28:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	153303252	rs41310915	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,49:30:103:0.476:2	./.	./.	./.	./.	./.
chr1	153313044	rs12063091	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,12:31:22:0.545:2	0/1:8,5:33:13:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	153314153	rs3006448	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,33:31:72:0.465:2	0/1:18,30:32:48:0.625:2	0/1:0,10:31:10:1.00:2	0/1:2,92:31:95:0.979:2	0/1:0,92:31:92:1.00:2	0/1:57,55:30:112:0.491:2	0/1:0,94:31:95:1.00:2	0/1:0,79:31:79:1.00:2	0/1:1,78:32:79:0.987:2	0/1:1,64:31:65:0.985:2	0/1:0,73:32:73:1.00:2
chr1	153315579	rs3014863	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,100:30:100:1.00:2	0/1:0,44:29:44:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,127:30:127:1.00:2	0/1:1,92:29:93:0.989:2	0/1:74,57:29:131:0.435:2	0/1:0,103:30:103:1.00:2	0/1:1,138:29:139:0.993:2	0/1:0,140:30:140:1.00:2	0/1:1,118:29:119:0.992:2	0/1:0,108:29:108:1.00:2
chr1	153317753	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:125,4:32:129:0.031:2	./.	./.	./.	./.	./.	./.
chr1	153320334	rs3006457	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,20:33:47:0.426:2	0/1:15,21:32:36:0.583:2	0/1:0,4:32:4:1.00:2	0/1:0,64:33:64:1.00:2	0/1:0,22:32:22:1.00:2	0/1:22,32:32:54:0.593:2	0/1:2,18:30:20:0.900:2	0/1:0,43:32:43:1.00:2	0/1:1,46:33:47:0.979:2	0/1:0,42:32:42:1.00:2	0/1:0,63:33:63:1.00:2
chr1	153320372	rs3006458	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,28:32:60:0.467:2	0/1:26,26:33:52:0.500:2	0/1:0,4:32:4:1.00:2	0/1:0,85:33:85:1.00:2	0/1:0,36:32:36:1.00:2	0/1:31,47:32:78:0.603:2	0/1:2,53:31:55:0.964:2	0/1:1,67:32:68:0.985:2	0/1:1,61:33:62:0.984:2	0/1:0,64:33:64:1.00:2	0/1:0,93:33:93:1.00:2
chr1	153320401	rs12096209	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,32:33:67:0.478:2	0/1:23,22:32:45:0.489:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	153390626	rs55985140	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:120,65:32:185:0.351:2	./.	./.	./.	0/1:122,64:32:186:0.344:2	./.	./.	./.
chr1	153391729	rs3006414	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:31:13:0.462:2	./.	./.	0/1:62,52:31:114:0.456:2	./.	./.	./.	./.	./.
chr1	153391786	rs3014813	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	./.	0/1:26,25:32:51:0.490:2	./.	./.	./.	./.	./.
chr1	153410822	rs10888561	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,34:31:65:0.523:2	0/1:26,23:31:49:0.469:2	0/1:5,4:31:9:0.444:2	0/1:34,42:31:76:0.553:2	0/1:22,27:30:49:0.551:2	0/1:37,23:30:60:0.383:2	0/1:1,62:30:63:0.984:2	0/1:2,55:31:57:0.965:2	0/1:37,43:32:80:0.538:2	0/1:16,39:31:55:0.709:2	0/1:0,103:31:103:1.00:2
chr1	153412392	rs3006428	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,48:33:98:0.490:2	0/1:26,21:33:47:0.447:2	0/1:7,6:33:13:0.462:2	0/1:71,51:33:122:0.418:2	0/1:48,38:32:86:0.442:2	0/1:50,62:32:112:0.554:2	0/1:1,105:33:106:0.991:2	0/1:0,112:33:112:1.00:2	0/1:57,51:34:108:0.472:2	0/1:41,38:33:79:0.481:2	0/1:0,92:34:92:1.00:2
chr1	153431401	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2
chr1	153431406	rs3014837	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,178:30:181:0.989:2	0/1:1,122:32:123:0.992:2	0/1:0,35:31:35:1.00:2	0/1:0,184:31:184:1.00:2	0/1:0,178:30:178:1.00:2	0/1:0,183:31:183:1.00:2	0/1:0,186:31:186:1.00:2	0/1:1,181:31:182:0.995:2	0/1:0,171:31:172:1.00:2	0/1:102,80:29:183:0.440:2	0/1:2,177:30:179:0.989:2
chr1	153509892	rs2248745	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,69:30:156:0.442:2	0/1:65,51:29:116:0.440:2	./.
chr1	153517172	rs1050923	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,69:33:130:0.531:2	./.	./.
chr1	153520203	rs41265164	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,55:32:105:0.524:2	./.	./.
chr1	153520954	rs36022742	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,28:32:61:0.459:2	./.	./.
chr1	153534027	rs1047325	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,89:32:181:0.492:2	./.	./.
chr1	153580611	rs142651762	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:32:89:0.045:2	./.	./.
chr1	153588279	rs9792967	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,7:31:17:0.412:2	0/1:0,171:31:171:1.00:2	0/1:120,54:30:174:0.310:2	0/1:106,89:31:195:0.456:2	./.	0/1:101,92:31:193:0.477:2	0/1:80,85:32:165:0.515:2	0/1:2,123:31:125:0.984:2	0/1:60,75:31:135:0.556:2
chr1	153588340	rs11548103	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,126:32:127:0.992:2	0/1:0,93:31:93:1.00:2	0/1:4,15:30:19:0.789:2	./.	0/1:74,108:31:182:0.593:2	0/1:94,86:32:180:0.478:2	0/1:0,154:32:154:1.00:2	0/1:106,84:32:190:0.442:2	0/1:114,78:33:192:0.406:2	./.	0/1:112,74:31:186:0.398:2
chr1	153598801	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:121,4:33:125:0.032:2	./.	./.	./.	./.	./.	./.
chr1	153598904	rs113541380	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:28:15:0.533:2	./.	0/1:96,63:29:159:0.396:2	./.	./.	./.	./.	./.	./.
chr1	153604029	rs1046379	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:33:3:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,26:30:26:1.00:2	0/1:46,18:31:64:0.281:2	./.	0/1:0,49:32:49:1.00:2	0/1:39,39:33:78:0.500:2	0/1:0,32:32:32:1.00:2	0/1:0,72:32:72:1.00:2
chr1	153631943	rs8532	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,62:32:150:0.413:2	./.	./.	./.	./.	./.	./.
chr1	153636860	rs4351684	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,5:33:8:0.625:2	0/1:4,58:32:62:0.935:2	0/1:0,60:31:60:1.00:2	0/1:32,29:32:61:0.475:2	./.	0/1:48,32:33:80:0.400:2	0/1:37,29:33:66:0.439:2	0/1:0,54:32:54:1.00:2	0/1:46,35:32:81:0.432:2
chr1	153636865	rs138777641	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,25:30:60:0.417:2	./.	./.	./.	./.
chr1	153642372	rs79913857	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	0/1:27,38:32:65:0.585:2
chr1	153653039	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:160,4:33:164:0.024:2	./.	./.	./.	./.	./.	./.
chr1	153657484	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,7:19:70:0.100:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,6:23:69:0.087:2
chr1	153658297	rs61757359	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,57:31:118:0.483:2	./.	./.	./.	./.	./.	./.
chr1	153662332	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,6:29:128:0.047:2	./.	./.	./.	./.
chr1	153662340	rs35240348	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,86:32:157:0.548:2	./.	./.	./.	./.	./.	./.
chr1	153662374	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:29:75:0.053:2	./.	./.	./.	./.	./.
chr1	153701188	rs150819290	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,42:31:92:0.462:2
chr1	153730207	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,5:26:122:0.041:2	./.	./.	./.	./.	./.
chr1	153735249	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:152,6:34:158:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr1	153743234	rs6675978	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,8:30:17:0.471:2	0/1:6,7:33:13:0.538:2	./.	./.	./.	0/1:11,9:32:20:0.450:2	0/1:8,9:33:17:0.529:2	0/1:9,12:33:21:0.571:2	0/1:5,8:33:13:0.615:2	./.	0/1:17,15:33:32:0.469:2
chr1	153745128	rs6663011	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,44:33:101:0.436:2	./.	./.	./.	./.	./.	./.
chr1	153747616	rs6682411	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,20:29:58:0.345:2	./.	./.	./.	./.	./.	./.
chr1	153748219	rs36064263	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,27:30:39:0.692:2	./.	./.	./.	./.	./.	./.
chr1	153750682	rs146128753	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,16:32:24:0.667:2	./.	./.	./.	./.	./.
chr1	153750738	rs34074094	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,8:32:19:0.421:2	./.
chr1	153752356	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:30:60:0.067:2
chr1	153909069	rs1043608	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,7:27:19:0.368:2	0/1:3,142:29:145:0.979:2	0/1:82,81:29:163:0.497:2	./.	./.	./.	0/1:76,75:30:153:0.497:2	./.	./.
chr1	153910028	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,4:29:107:0.037:2	./.	./.	./.	./.	./.	./.
chr1	153913699	rs1110165	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:33:7:0.571:2	0/1:5,94:33:99:0.949:2	0/1:50,48:32:98:0.490:2	./.	./.	./.	0/1:23,36:33:59:0.610:2	./.	./.
chr1	153913770	rs2252508	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,5:30:11:0.455:2	0/1:4,80:32:84:0.952:2	0/1:53,40:32:93:0.430:2	0/1:44,30:32:74:0.405:2	./.	0/1:50,27:31:77:0.351:2	0/1:30,28:33:58:0.483:2	0/1:37,54:33:91:0.593:2	./.
chr1	153925070	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:32:108:0.037:2	./.	./.
chr1	153926078	rs11264680	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,8:32:17:0.471:2	0/1:0,49:32:49:1.00:2	0/1:33,41:31:74:0.554:2	./.	./.	./.	0/1:40,56:33:96:0.583:2	./.	./.
chr1	153932970	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,27:31:40:0.675:2	./.	./.	./.	./.
chr1	153941514	rs11264743	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:30:9:0.444:2	0/1:4,74:31:78:0.949:2	0/1:26,28:32:54:0.519:2	./.	./.	./.	0/1:47,34:31:81:0.420:2	./.	./.
chr1	153946189	rs41265209	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:28:7:0.571:2	./.	0/1:23,21:28:44:0.477:2	./.	./.	./.	./.	./.	./.
chr1	153958698	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,5:32:46:0.109:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	153963281	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:34:187:0.021:2	./.	./.
chr1	153963594	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:33:91:0.044:2	./.	./.	./.	./.
chr1	153974237	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,52:31:121:0.430:2
chr1	153994647	rs11264875	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,7:30:13:0.538:2	0/1:0,104:31:104:1.00:2	0/1:78,63:30:141:0.447:2	./.	./.	./.	0/1:93,63:32:156:0.404:2	./.	./.
chr1	154018655	rs183446732	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,58:31:102:0.569:2	./.	./.	./.
chr1	154072601	rs139838869	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,62:32:112:0.554:2	./.
chr1	154108387	rs3001361	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:33:77:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,117:32:117:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,84:31:84:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,124:32:124:1.00:2	0/1:0,76:31:76:1.00:2	0/1:0,95:32:95:1.00:2
chr1	154144681	rs34335016	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,54:30:107:0.505:2	./.	0/1:53,49:29:102:0.480:2	./.	0/1:40,47:30:87:0.540:2	./.
chr1	154178079	rs74957241	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,25:30:43:0.581:2	./.	./.	./.	./.
chr1	154178724	rs41305088	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,45:32:98:0.459:2	./.	./.	./.	./.	./.	./.	./.
chr1	154184846	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,4:33:63:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr1	154192805	rs368781363	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,33:30:65:0.516:2	./.	./.	./.	./.	./.
chr1	154201129	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:32:152:0.026:2
chr1	154228171	rs141405066	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:34:100:0.040:2	./.
chr1	154245917	rs13796	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:32:10:0.600:2	./.	./.	0/1:35,37:31:73:0.514:2	./.	./.	./.	0/1:25,20:32:45:0.444:2	./.
chr1	154293675	rs6668968	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,16:33:43:0.372:2	./.	./.	0/1:14,29:32:43:0.674:2	0/1:26,23:33:49:0.469:2	0/1:24,21:34:45:0.467:2	0/1:0,38:33:38:1.00:2	0/1:19,13:33:32:0.406:2
chr1	154294464	rs201824170	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:170,20:32:190:0.105:2	0/1:135,12:32:147:0.082:2	0/1:41,5:32:46:0.109:2	0/1:173,16:31:189:0.085:2	./.	0/1:168,25:31:193:0.130:2	./.	0/1:178,16:34:194:0.082:2	0/1:168,24:34:192:0.125:2	0/1:157,31:32:188:0.165:2	./.
chr1	154294471	rs200279756	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:171,16:28:187:0.086:2	0/1:140,12:31:152:0.079:2	0/1:41,5:29:46:0.109:2	0/1:174,12:29:186:0.065:2	./.	0/1:167,27:29:194:0.139:2	./.	0/1:182,11:29:193:0.057:2	0/1:162,17:31:179:0.095:2	0/1:166,24:29:190:0.126:2	./.
chr1	154294499	rs201059654	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:166,15:31:181:0.083:2	0/1:148,10:31:158:0.063:2	./.	0/1:184,6:30:190:0.032:2	./.	0/1:183,12:30:195:0.062:2	./.	0/1:184,9:30:193:0.047:2	0/1:175,15:31:190:0.079:2	0/1:171,14:30:185:0.076:2	./.
chr1	154295592	rs6685323	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,67:31:137:0.489:2	./.	./.	0/1:88,53:31:141:0.376:2	0/1:58,55:31:113:0.487:2	0/1:77,67:32:144:0.465:2	0/1:1,135:31:136:0.993:2	0/1:62,65:31:127:0.512:2
chr1	154296076	rs1194610	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:33,19:30:52:0.365:2	0/1:19,24:30:43:0.558:2	0/1:8,3:33:11:0.273:2	./.	./.	0/1:46,44:31:90:0.489:2	./.	0/1:56,53:29:109:0.486:2	./.	./.	./.
chr1	154303976	rs6702754	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,36:28:83:0.434:2	./.	./.	0/1:44,39:30:83:0.470:2	0/1:45,62:29:107:0.579:2	0/1:35,37:29:72:0.514:2	0/1:0,52:29:52:1.00:2	0/1:53,51:30:104:0.490:2
chr1	154307027	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:31:67:0.060:2
chr1	154310048	rs1760795	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,89:32:170:0.524:2	0/1:57,55:32:112:0.491:2	0/1:10,11:32:21:0.524:2	0/1:97,98:32:195:0.503:2	0/1:1,152:31:153:0.993:2	0/1:91,80:31:171:0.468:2	0/1:80,92:32:172:0.535:2	./.	0/1:77,106:33:183:0.579:2	./.	0/1:96,95:32:191:0.497:2
chr1	154313441	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,4:32:79:0.051:2	./.	./.	./.	./.	./.	./.
chr1	154316434	rs2274988	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,19:31:41:0.463:2	./.	0/1:20,23:30:43:0.535:2	./.	0/1:26,32:31:58:0.552:2	0/1:26,20:31:46:0.435:2	0/1:20,16:31:36:0.444:2	./.
chr1	154317153	rs1194587	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,21:34:36:0.583:2	0/1:9,26:33:35:0.743:2	0/1:3,4:33:7:0.571:2	0/1:36,46:33:82:0.561:2	0/1:0,62:32:62:1.00:2	0/1:46,61:32:107:0.570:2	0/1:46,37:33:83:0.446:2	./.	0/1:50,51:34:101:0.505:2	./.	0/1:40,36:32:76:0.474:2
chr1	154318292	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:33:124:0.032:2
chr1	154320942	rs2297607	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,58:30:129:0.450:2	./.	0/1:61,54:28:115:0.470:2	0/1:43,31:30:74:0.419:2	0/1:39,38:30:77:0.494:2	./.
chr1	154401679	rs2228144	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,46:31:76:0.605:2
chr1	154426970	rs2228145	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,37:32:38:0.974:2	0/1:0,13:33:13:1.00:2	./.	0/1:20,21:31:41:0.512:2	./.	0/1:32,17:29:49:0.347:2	0/1:29,13:32:42:0.310:2	./.	0/1:21,19:34:40:0.475:2	./.	0/1:21,15:33:36:0.417:2
chr1	154437773	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:43,9:14:53:0.173:2	./.	./.	./.	0/1:68,13:15:81:0.160:2	./.	./.	./.	./.	./.	./.
chr1	154474131	rs4845635	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,23:32:24:0.958:2	0/1:0,19:30:19:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,32:31:32:1.00:2	0/1:36,18:30:54:0.333:2	0/1:0,39:30:39:1.00:2	0/1:0,24:31:24:1.00:2	0/1:25,19:31:44:0.432:2
chr1	154516477	rs12750774	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,28:31:28:1.00:2	./.	0/1:93,88:31:181:0.486:2	./.	0/1:80,74:32:154:0.481:2	0/1:108,62:32:170:0.365:2	./.	0/1:91,69:31:160:0.431:2	0/1:84,79:31:163:0.485:2
chr1	154516571	rs6678164	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,135:32:136:0.993:2	0/1:0,78:32:78:1.00:2	0/1:0,19:31:19:1.00:2	0/1:1,148:32:149:0.993:2	0/1:0,159:32:159:1.00:2	0/1:0,179:32:179:1.00:2	0/1:0,164:32:164:1.00:2	0/1:120,73:32:193:0.378:2	0/1:0,152:33:152:1.00:2	0/1:1,135:32:136:0.993:2	0/1:0,139:31:139:1.00:2
chr1	154516578	rs3811448	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,55:30:143:0.385:2	0/1:100,61:31:161:0.379:2	0/1:116,68:30:184:0.370:2	./.	./.	0/1:90,59:32:149:0.396:2	./.	./.
chr1	154523948	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:34:129:0.031:2	./.	./.
chr1	154541971	rs200729328	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,11:13:94:0.117:2	./.	./.	./.
chr1	154558719	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:33:151:0.026:2
chr1	154561925	rs1127309	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,11:31:27:0.407:2	0/1:5,17:31:22:0.773:2	./.	0/1:27,17:30:44:0.386:2	0/1:14,11:30:25:0.440:2	0/1:30,27:30:57:0.474:2	0/1:25,13:31:38:0.342:2	0/1:28,19:30:47:0.404:2	0/1:0,57:32:57:1.00:2	./.	0/1:27,21:31:49:0.438:2
chr1	154562348	rs138927668	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,68:30:133:0.511:2	./.	./.	./.	./.	./.
chr1	154573967	rs2229857	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,55:33:125:0.440:2	0/1:54,33:33:87:0.379:2	0/1:0,18:32:18:1.00:2	0/1:52,61:32:113:0.540:2	0/1:48,47:32:95:0.495:2	0/1:68,53:32:121:0.438:2	0/1:57,38:33:95:0.400:2	0/1:55,64:32:119:0.538:2	./.	0/1:0,111:33:111:1.00:2	0/1:71,67:33:138:0.486:2
chr1	154574347	rs368596210	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:33:178:0.022:2	./.	./.
chr1	154574820	rs1466731	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:31:51:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,75:30:75:1.00:2	0/1:0,63:30:63:1.00:2	0/1:1,55:29:56:0.982:2	0/1:1,57:30:58:0.983:2	0/1:0,80:29:80:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,44:30:44:1.00:2	0/1:1,72:31:73:0.986:2
chr1	154575040	rs1802645	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:31:47:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,37:31:37:1.00:2
chr1	154575080	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	154580458	rs58655370	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,41:29:73:0.569:2	./.	./.	./.	./.	./.	0/1:28,25:29:53:0.472:2	0/1:26,28:30:54:0.519:2
chr1	154744807	rs1051614	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:32:94:1.00:2	0/1:0,49:31:49:1.00:2	0/1:5,5:33:10:0.500:2	0/1:83,85:33:168:0.506:2	0/1:89,80:32:169:0.473:2	0/1:0,163:32:163:1.00:2	0/1:89,80:33:169:0.473:2	0/1:95,82:32:177:0.463:2	0/1:1,142:33:144:0.993:2	0/1:1,111:32:112:0.991:2	0/1:47,64:32:111:0.577:2
chr1	154744852	rs1131820	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:30:72:1.00:2	0/1:2,42:29:44:0.955:2	0/1:3,4:31:7:0.571:2	0/1:1,145:30:146:0.993:2	0/1:94,89:30:183:0.486:2	0/1:1,132:29:133:0.992:2	0/1:93,96:30:189:0.508:2	0/1:78,59:30:137:0.431:2	0/1:2,126:31:128:0.984:2	0/1:0,95:30:95:1.00:2	0/1:0,85:29:85:1.00:2
chr1	154841889	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:32:51:0.078:2	./.	./.	./.
chr1	154842243	.	A	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,7:32:10:0.700:2	./.	./.	0/1:9,3:31:12:0.250:2	0/1:1,3:29:4:0.750:2	./.	./.	./.	0/1:2,6:34:8:0.750:2	0/1:2,4:32:6:0.667:2	./.
chr1	154842244	.	A	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,7:32:10:0.700:2	./.	./.	0/1:9,3:33:12:0.250:2	0/1:1,3:31:4:0.750:2	./.	./.	./.	0/1:2,6:32:8:0.750:2	0/1:2,4:32:6:0.667:2	./.
chr1	154901581	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:30:123:0.033:2	./.	./.	./.	./.	./.
chr1	154904856	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:30:105:0.038:2
chr1	154918244	rs41264251	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,23:30:47:0.489:2	0/1:17,13:32:30:0.433:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	154918352	rs41264253	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,36:32:52:0.692:2	./.	./.	./.	./.	./.	./.	./.
chr1	154919080	rs2061690	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,3:32:16:0.188:2	0/1:1,4:30:5:0.800:2	./.	0/1:7,15:30:22:0.682:2	0/1:17,15:29:32:0.469:2	0/1:10,14:31:24:0.583:2	0/1:10,11:31:21:0.524:2	0/1:11,16:30:27:0.593:2	./.	0/1:6,12:31:18:0.667:2	0/1:0,21:31:21:1.00:2
chr1	154936713	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,4:32:98:0.041:2	./.	./.	./.	./.	./.	./.
chr1	154947214	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,5:32:153:0.033:2	./.	./.	./.	./.	./.
chr1	154947218	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,5:32:168:0.030:2	./.	./.	./.	./.	./.
chr1	154947226	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,5:31:183:0.027:2	./.	./.	./.	./.	./.
chr1	154947247	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,4:32:20:0.200:2	./.	./.	./.	./.	./.	./.	0/1:167,5:32:173:0.029:2	./.
chr1	154960651	rs140409443	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:87,64:32:152:0.424:2	0/1:50,46:32:96:0.479:2	./.	./.	./.	./.	./.	./.	./.	0/1:101,69:32:170:0.406:2	./.
chr1	154961121	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:32:76:0.053:2	./.
chr1	154987526	rs11264295	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,11:31:34:0.324:2	0/1:7,8:31:15:0.533:2	./.	./.	0/1:37,23:32:60:0.383:2	0/1:36,11:31:47:0.234:2	./.	0/1:31,23:30:54:0.426:2	./.	0/1:19,30:29:49:0.612:2	0/1:0,25:31:25:1.00:2
chr1	154988957	rs2242195	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,47:28:47:1.00:2	0/1:0,18:29:18:1.00:2	./.	./.	0/1:31,19:26:50:0.380:2	0/1:1,31:28:32:0.969:2	0/1:1,18:27:19:0.947:2	0/1:25,9:29:34:0.265:2	0/1:12,10:26:23:0.455:2	0/1:0,28:27:28:1.00:2	0/1:0,15:23:15:1.00:2
chr1	154995920	rs72702247	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,24:29:45:0.533:2	./.	./.	./.	0/1:19,19:31:39:0.500:2	./.
chr1	155003075	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:33:137:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	155006091	rs10908453	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:35,19:30:54:0.352:2	0/1:15,16:30:31:0.516:2	0/1:3,5:33:8:0.625:2	./.	0/1:47,44:32:92:0.484:2	0/1:55,40:33:95:0.421:2	./.	0/1:49,49:32:98:0.500:2	./.	0/1:41,45:32:86:0.523:2	0/1:0,82:31:82:1.00:2
chr1	155006999	rs6680600	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,18:31:32:0.563:2	0/1:5,6:30:11:0.545:2	./.	./.	0/1:19,12:31:31:0.387:2	0/1:18,10:30:28:0.357:2	./.	0/1:20,13:32:33:0.394:2	./.	0/1:9,7:32:16:0.438:2	0/1:18,14:30:32:0.438:2
chr1	155019710	rs11264300	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:53,48:33:101:0.475:2	0/1:37,18:31:55:0.327:2	0/1:12,12:34:24:0.500:2	./.	0/1:47,50:32:97:0.515:2	0/1:87,52:33:139:0.374:2	./.	0/1:89,74:32:163:0.454:2	./.	0/1:49,38:32:87:0.437:2	0/1:100,61:33:161:0.379:2
chr1	155019712	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:127,4:31:131:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr1	155026871	rs11548311	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:24,18:32:42:0.429:2	0/1:10,8:33:18:0.444:2	./.	./.	./.	./.	0/1:0,33:31:33:1.00:2	./.	0/1:0,28:33:28:1.00:2	./.	./.
chr1	155026942	rs6427128	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:28:33:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,5:27:5:1.00:2	0/1:0,53:28:53:1.00:2	0/1:24,16:27:40:0.400:2	0/1:33,22:28:55:0.400:2	0/1:0,39:27:39:1.00:2	0/1:34,30:28:64:0.469:2	0/1:0,30:29:30:1.00:2	0/1:1,37:28:38:0.974:2	0/1:21,16:27:37:0.432:2
chr1	155029456	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:32:158:0.025:2	./.
chr1	155030557	rs11264303	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,8:29:29:0.276:2	0/1:6,8:29:14:0.571:2	0/1:0,4:29:4:1.00:2	0/1:0,38:30:38:1.00:2	0/1:20,21:30:41:0.512:2	./.	0/1:3,46:30:49:0.939:2	0/1:28,11:30:39:0.282:2	0/1:0,23:30:23:1.00:2	./.	0/1:10,11:30:21:0.524:2
chr1	155033308	rs11589479	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,13:31:20:0.650:2	0/1:10,7:32:17:0.412:2	./.	./.	./.	./.	0/1:0,27:33:27:1.00:2
chr1	155033317	rs11264304	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,9:28:9:1.00:2	0/1:0,11:25:11:1.00:2	./.	0/1:0,17:26:17:1.00:2	0/1:12,5:25:17:0.294:2	0/1:8,8:29:16:0.500:2	0/1:0,16:27:16:1.00:2	./.	0/1:0,15:29:15:1.00:2	0/1:0,6:27:6:1.00:2	./.
chr1	155033918	rs41264285	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,7:29:14:0.500:2	0/1:59,56:31:115:0.487:2	./.	./.	./.	./.	./.	./.	./.
chr1	155058663	rs17723260	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,9:29:19:0.474:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	155106009	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:32:151:0.026:2	./.	./.	./.
chr1	155106054	rs4390169	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:29:13:0.538:2	./.	0/1:79,53:28:132:0.402:2	0/1:73,43:29:117:0.371:2	0/1:96,68:29:164:0.415:2	0/1:7,151:29:158:0.956:2	./.	./.	0/1:1,127:29:128:0.992:2
chr1	155106227	rs4745	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,14:32:26:0.538:2	./.	0/1:59,68:31:127:0.535:2	0/1:79,63:31:142:0.444:2	0/1:59,63:31:122:0.516:2	0/1:4,177:31:181:0.978:2	./.	./.	0/1:1,144:32:145:0.993:2
chr1	155141949	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.	./.	./.	./.	./.
chr1	155145763	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,4:32:83:0.048:2	./.	./.	./.	./.	./.	./.	./.
chr1	155149718	rs3814316	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:37,34:33:71:0.479:2	0/1:25,14:31:39:0.359:2	./.	0/1:49,53:33:102:0.520:2	./.	0/1:54,53:32:107:0.495:2	./.	./.	./.	0/1:1,78:33:79:0.987:2	./.
chr1	155150537	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:33:66:0.061:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	155150561	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:32:116:0.035:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	155160941	rs11465205	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,65:32:153:0.425:2	./.	./.	./.
chr1	155162017	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:31:126:0.032:2	./.	./.	./.	./.
chr1	155162067	rs4072037	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:33:85:1.00:2	0/1:0,31:32:31:1.00:2	0/1:9,3:32:12:0.250:2	0/1:2,85:32:87:0.977:2	0/1:38,36:31:74:0.486:2	0/1:35,61:31:96:0.635:2	0/1:37,27:32:64:0.422:2	./.	0/1:1,94:33:95:0.989:2	0/1:2,77:32:79:0.975:2	./.
chr1	155170323	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:34:175:0.023:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	155171288	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:131,11:18:142:0.077:2	./.	./.	./.	./.	./.	./.	./.
chr1	155172725	rs35154152	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,35:28:74:0.473:2	0/1:20,25:28:45:0.556:2	0/1:2,5:29:7:0.714:2	0/1:32,43:28:75:0.573:2	0/1:42,43:29:85:0.506:2	./.	0/1:48,44:28:92:0.478:2	./.	0/1:0,82:29:82:1.00:2	./.	./.
chr1	155173035	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,60:30:117:0.513:2	./.	./.	./.	./.	./.
chr1	155178782	rs760077	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,3:32:3:1.00:2	./.	./.	0/1:0,5:31:5:1.00:2	0/1:2,5:28:7:0.714:2	./.	./.	./.	0/1:0,5:34:5:1.00:2	./.	./.
chr1	155181989	rs61738875	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:58,31:33:89:0.348:2	0/1:22,30:32:52:0.577:2	./.	./.	0/1:79,63:32:142:0.444:2	./.	0/1:62,67:32:129:0.519:2	./.	0/1:0,122:33:122:1.00:2	./.	./.
chr1	155183381	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,4:31:37:0.108:2	./.	./.	./.	./.	./.	./.
chr1	155184367	rs137953989	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,69:32:179:0.385:2
chr1	155184412	rs146090650	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,68:30:170:0.400:2	./.	./.	./.	./.	./.
chr1	155184891	rs145796415	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:32:179:0.022:2	./.	./.	./.	./.	./.
chr1	155186246	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,7:33:196:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	155186253	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,7:30:197:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	155186729	rs28445596	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,93:33:95:0.979:2	0/1:0,62:33:62:1.00:2	0/1:13,10:32:23:0.435:2	0/1:1,142:33:143:0.993:2	0/1:43,53:32:96:0.552:2	0/1:51,62:33:113:0.549:2	0/1:71,52:32:123:0.423:2	./.	0/1:0,116:33:116:1.00:2	0/1:1,146:33:147:0.993:2	./.
chr1	155186742	rs1057941	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:49,41:31:90:0.456:2	0/1:31,27:31:58:0.466:2	./.	0/1:63,53:31:116:0.457:2	./.	0/1:44,47:30:91:0.516:2	./.	./.	./.	0/1:1,125:31:127:0.992:2	./.
chr1	155205008	rs368060	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,6:33:169:0.036:2
chr1	155207203	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:32:191:0.021:2
chr1	155207210	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:32:192:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2
chr1	155217984	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:30:55:0.073:2	./.
chr1	155218011	rs150296362	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:19,22:29:42:0.537:2	0/1:13,12:30:25:0.480:2	./.	./.	./.	./.	./.	./.	./.	0/1:20,26:30:46:0.565:2	./.
chr1	155220135	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:31:126:0.032:2	./.	./.	./.	./.	./.
chr1	155220551	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:30:36:0.111:2	./.	./.	./.	./.
chr1	155230131	rs1142287	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:32:6:0.667:2	0/1:21,18:32:39:0.462:2	./.	0/1:17,28:31:45:0.622:2	./.	./.	./.	0/1:8,8:31:16:0.500:2	./.
chr1	155255087	rs201786360	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,4:23:24:0.167:2	./.	./.	./.	./.	./.	./.
chr1	155257061	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:32:129:0.031:2
chr1	155257818	rs35001694	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,52:31:100:0.520:2	./.	./.	./.	0/1:24,29:30:53:0.547:2
chr1	155260383	rs1052176	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,6:31:9:0.667:2	0/1:13,16:32:29:0.552:2	./.	0/1:25,12:31:37:0.324:2	./.	./.	./.	0/1:13,9:33:22:0.409:2	./.
chr1	155263267	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.	./.	./.
chr1	155271086	rs192191038	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,62:31:149:0.416:2	./.	./.	./.
chr1	155288495	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:33:82:0.049:2	./.
chr1	155290231	rs41314549	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:30:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	155291431	rs12741581	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,72:31:126:0.571:2	./.	./.	./.	0/1:51,48:32:99:0.485:2	./.
chr1	155294274	rs914616	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,4:33:4:1.00:2	0/1:0,3:33:3:1.00:2	./.	0/1:0,2:32:2:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,5:26:5:1.00:2	0/1:0,4:26:4:1.00:2
chr1	155322637	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,3:31:27:0.111:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	155408635	rs4971053	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:29:104:1.00:2	0/1:0,68:29:68:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,108:29:108:1.00:2	0/1:0,115:29:115:1.00:2	0/1:0,117:30:117:1.00:2	0/1:0,113:30:114:1.00:2	0/1:0,166:29:166:1.00:2	0/1:0,133:30:133:1.00:2	0/1:3,90:28:93:0.968:2	0/1:0,152:28:152:1.00:2
chr1	155450301	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:122,4:31:126:0.032:2	./.	./.	./.	./.	./.	./.
chr1	155451466	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:33:44:0.091:2	./.	./.	./.	./.
chr1	155490984	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,9:19:110:0.082:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	155580061	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,3:28:18:0.167:2	./.	./.	./.	./.	./.
chr1	155581319	rs202139573	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,83:32:198:0.419:2	./.	./.	./.	./.	./.	./.	./.
chr1	155583937	rs147713038	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,7:31:25:0.280:2	0/1:127,66:32:193:0.342:2	./.	0/1:150,45:32:195:0.231:2	./.	./.	./.	0/1:131,57:32:188:0.303:2	./.
chr1	155629483	rs7539	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:26,27:33:53:0.509:2	0/1:12,26:32:38:0.684:2	./.	./.	./.	./.	0/1:19,15:32:34:0.441:2	./.	0/1:34,26:34:60:0.433:2	./.	./.
chr1	155629882	rs373373657	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:31:117:0.034:2	./.
chr1	155630462	rs182978	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:31:124:0.034:2	./.	./.	./.	./.	./.
chr1	155640133	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:31:94:0.043:2	./.	./.
chr1	155640254	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,3:30:21:0.143:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	155650212	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:32:123:0.033:2	./.	./.	./.
chr1	155658085	rs2666826	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,13:34:33:0.394:2	./.	0/1:0,36:32:36:1.00:2	./.	./.	./.	0/1:15,14:32:29:0.483:2	./.
chr1	155691371	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,6:31:179:0.034:2	./.	./.	./.
chr1	155699118	rs4933	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,33:32:93:0.355:2	./.	./.	./.	./.	./.
chr1	155733105	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:31:113:0.035:2	./.	./.	./.	./.
chr1	155733214	rs607790	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,5:32:127:0.039:2	./.	./.	./.
chr1	155733245	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,5:33:95:0.053:2	./.	./.	./.
chr1	155733257	rs607834	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,5:30:85:0.059:2	./.	./.	./.
chr1	155735012	rs2297775	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,7:32:12:0.583:2	0/1:50,61:32:111:0.550:2	./.	0/1:57,39:32:96:0.406:2	./.	./.	./.	0/1:51,23:31:74:0.311:2	./.
chr1	155735475	rs675918	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,5:32:109:0.046:2	./.	./.	./.	./.	./.	./.	./.
chr1	155755097	rs822021	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:33:90:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,73:31:73:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,100:33:100:1.00:2	0/1:1,91:32:92:0.989:2	0/1:0,109:32:109:1.00:2
chr1	155755109	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:31:100:0.040:2	./.
chr1	155774899	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:34:89:0.045:2	./.
chr1	155783577	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:31:62:0.065:2	./.	./.	./.	./.
chr1	155837865	rs822522	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,70:33:70:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,77:31:77:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,60:32:60:1.00:2	0/1:1,58:32:59:0.983:2	0/1:0,73:32:73:1.00:2
chr1	155838267	rs822521	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:30:63:1.00:2	0/1:0,46:28:46:1.00:2	0/1:0,7:31:7:1.00:2	0/1:1,54:29:55:0.982:2	0/1:0,52:29:52:1.00:2	0/1:0,54:30:54:1.00:2	0/1:1,59:31:60:0.983:2	0/1:0,47:30:47:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,59:30:59:1.00:2	0/1:1,58:29:59:0.983:2
chr1	155870264	rs376391961	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2	./.
chr1	155880573	rs493446	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:33:40:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,10:33:10:1.00:2	0/1:33,28:33:61:0.459:2	0/1:11,15:33:26:0.577:2	0/1:27,21:33:48:0.438:2	0/1:2,48:31:50:0.960:2	0/1:0,44:32:44:1.00:2	0/1:0,45:32:45:1.00:2	0/1:1,43:33:44:0.977:2	0/1:0,42:32:42:1.00:2
chr1	155899083	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:32:99:0.040:2
chr1	155899133	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:33:103:0.039:2	./.	./.	./.	./.	./.
chr1	155903588	rs149444935	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:32:42:0.095:2
chr1	155904177	rs2275079	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:32:22:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,14:32:14:1.00:2	0/1:27,21:31:48:0.438:2	0/1:40,29:31:69:0.420:2	0/1:43,36:32:79:0.456:2	0/1:0,57:31:57:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,34:31:34:1.00:2
chr1	155912486	rs2152051	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:26:23:1.00:2	0/1:0,17:27:17:1.00:2	0/1:0,3:27:3:1.00:2	0/1:0,35:26:35:1.00:2	0/1:0,18:27:18:1.00:2	0/1:0,31:25:31:1.00:2	0/1:0,19:26:19:1.00:2	0/1:0,24:25:24:1.00:2	0/1:0,29:26:29:1.00:2	0/1:0,18:27:18:1.00:2	0/1:0,22:24:22:1.00:2
chr1	155932787	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:31:112:0.036:2	./.	./.	./.	./.
chr1	156011444	rs2297792	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,49:32:50:0.980:2	0/1:0,27:32:27:1.00:2	./.	0/1:0,60:31:60:1.00:2	./.	./.	0/1:3,46:31:49:0.939:2	0/1:2,84:31:86:0.977:2	0/1:0,50:32:50:1.00:2	0/1:24,22:32:46:0.478:2	0/1:16,19:33:35:0.543:2
chr1	156011756	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,5:31:115:0.043:2	0/1:98,4:31:102:0.039:2	./.	./.	./.
chr1	156020157	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,5:31:188:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,6:28:190:0.032:2
chr1	156020163	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,6:28:192:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,5:32:190:0.026:2
chr1	156020184	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:32:194:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	156020264	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:33:190:0.021:2	./.	0/1:153,4:33:157:0.025:2
chr1	156020310	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:63,4:32:67:0.060:2	./.	0/1:127,4:33:131:0.031:2	./.	./.	./.	./.	./.	./.	0/1:124,8:32:132:0.061:2
chr1	156020944	rs145443991	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:31:48:0.083:2	./.
chr1	156025096	rs7541	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:31:6:0.667:2	0/1:26,22:31:48:0.458:2	0/1:23,21:31:44:0.477:2	./.	0/1:21,14:29:35:0.400:2	./.	./.	./.	./.
chr1	156035753	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:30:108:0.037:2	./.	./.	./.	./.	./.
chr1	156084760	rs11549668	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,18:29:34:0.529:2	./.	./.	./.	./.
chr1	156107534	rs4641	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	0/1:0,50:29:50:1.00:2	./.	./.	0/1:0,44:29:44:1.00:2	0/1:14,13:31:27:0.481:2	./.	0/1:12,12:28:24:0.500:2
chr1	156108460	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:33:104:0.038:2	./.	./.	./.	./.
chr1	156108483	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:31:114:0.035:2	./.	./.	./.
chr1	156142719	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:32:148:0.027:2	./.	./.	./.
chr1	156146218	rs12401573	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:32:45:1.00:2	0/1:0,24:32:24:1.00:2	0/1:3,3:32:6:0.500:2	0/1:0,50:32:50:1.00:2	./.	0/1:23,35:31:58:0.603:2	0/1:0,45:32:45:1.00:2	0/1:26,25:31:51:0.490:2	0/1:27,27:33:54:0.500:2	0/1:14,21:31:35:0.600:2	./.
chr1	156146689	rs41265019	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,60:31:113:0.531:2	./.	./.	./.	./.	./.	./.
chr1	156195386	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:33:154:0.026:2	./.	./.
chr1	156202173	rs1052053	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,53:31:102:0.520:2	0/1:42,22:29:64:0.344:2	0/1:8,7:31:15:0.467:2	0/1:90,75:31:165:0.455:2	0/1:79,79:30:158:0.500:2	./.	0/1:94,81:30:175:0.463:2	0/1:91,68:29:159:0.428:2	0/1:83,53:30:137:0.390:2	0/1:77,48:30:125:0.384:2	./.
chr1	156206121	rs1052067	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,58:31:136:0.426:2	0/1:31,21:31:52:0.404:2	0/1:10,5:30:15:0.333:2	0/1:90,61:31:151:0.404:2	0/1:97,95:30:192:0.495:2	./.	0/1:98,93:30:191:0.487:2	./.	0/1:88,50:32:138:0.362:2	./.	./.
chr1	156206181	rs11540816	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,10:33:16:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	156213921	rs7513351	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,23:28:64:0.359:2	./.	./.	./.	0/1:35,25:29:60:0.417:2	./.	./.
chr1	156215899	rs2075165	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,7:30:18:0.389:2	0/1:6,6:32:12:0.500:2	./.	./.	0/1:9,9:31:18:0.500:2	0/1:8,10:31:18:0.556:2	0/1:0,25:31:25:1.00:2	0/1:0,24:31:24:1.00:2	0/1:7,5:31:12:0.417:2	0/1:2,7:32:9:0.778:2	./.
chr1	156216511	rs11552751	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,4:29:77:0.052:2	./.	./.	./.	./.	./.	./.	./.
chr1	156233189	rs2273833	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:49,41:31:90:0.456:2	0/1:29,27:31:56:0.482:2	0/1:8,8:32:16:0.500:2	./.	./.	0/1:105,73:30:178:0.410:2	0/1:4,190:31:194:0.979:2	0/1:87,104:32:191:0.545:2	./.	0/1:60,58:31:118:0.492:2	./.
chr1	156244446	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:31:137:0.029:2	./.	./.	./.	./.
chr1	156255456	rs6684514	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,16:30:40:0.400:2	0/1:17,10:32:27:0.370:2	./.	./.	./.	0/1:35,26:30:61:0.426:2	0/1:4,75:30:79:0.949:2	0/1:43,36:30:79:0.456:2	./.	0/1:34,17:31:51:0.333:2	./.
chr1	156263940	rs10908495	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:20,25:31:45:0.556:2	0/1:21,10:32:31:0.323:2	0/1:4,6:31:10:0.600:2	./.	./.	0/1:25,37:31:62:0.597:2	0/1:2,105:32:107:0.981:2	0/1:42,34:31:76:0.447:2	./.	0/1:33,39:32:72:0.542:2	./.
chr1	156264000	rs10908496	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:22,40:31:62:0.645:2	0/1:24,16:31:40:0.400:2	0/1:6,8:31:14:0.571:2	./.	./.	0/1:36,42:30:78:0.538:2	0/1:2,93:31:95:0.979:2	0/1:48,43:31:91:0.473:2	./.	0/1:27,33:31:60:0.550:2	./.
chr1	156264283	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:30:82:0.049:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	156264648	rs1570805	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,24:30:44:0.545:2	./.	./.	./.	./.	0/1:0,61:32:61:1.00:2
chr1	156269389	rs12128785	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,7:33:16:0.438:2	0/1:0,13:31:13:1.00:2	0/1:13,9:32:22:0.409:2	./.	0/1:2,5:33:7:0.714:2	./.
chr1	156290656	rs11548200	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,47:29:136:0.346:2	./.	./.	./.
chr1	156314440	rs41265041	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,7:28:12:0.583:2	./.	./.	./.	./.	./.	./.
chr1	156347131	rs2245623	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:100,78:31:178:0.438:2	0/1:50,59:31:109:0.541:2	0/1:0,27:31:27:1.00:2	0/1:1,184:30:185:0.995:2	0/1:103,84:31:187:0.449:2	./.	0/1:108,86:31:194:0.443:2	0/1:112,78:31:190:0.411:2	0/1:96,80:32:176:0.455:2	./.	./.
chr1	156347147	rs150963900	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,72:34:180:0.400:2	./.	./.	./.	./.
chr1	156347834	rs11586833	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,146:30:148:0.986:2	0/1:121,68:30:189:0.360:2	./.	0/1:61,65:31:128:0.516:2	./.	0/1:0,89:29:90:1.00:2
chr1	156348006	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,3:29:15:0.200:2	./.	./.	./.	./.	./.	./.	./.
chr1	156348032	rs181064189	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,11:28:21:0.524:2	./.	./.	./.	./.	./.	./.
chr1	156351699	rs3748569	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,44:31:107:0.411:2	0/1:35,29:32:64:0.453:2	./.	./.	./.	0/1:2,108:31:110:0.982:2	0/1:67,53:31:120:0.442:2	./.	0/1:73,51:32:124:0.411:2	0/1:37,61:32:98:0.622:2	0/1:0,138:32:138:1.00:2
chr1	156354367	rs6668857	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,34:29:66:0.515:2	0/1:19,16:30:35:0.457:2	./.	./.	./.	0/1:1,75:30:76:0.987:2	0/1:52,41:28:93:0.441:2	0/1:47,46:28:93:0.495:2	0/1:42,64:29:106:0.604:2	0/1:0,53:29:53:1.00:2	0/1:0,66:29:66:1.00:2
chr1	156446903	rs2274317	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,80:28:81:0.988:2	0/1:0,57:29:57:1.00:2	0/1:0,5:29:5:1.00:2	0/1:1,109:29:110:0.991:2	0/1:92,58:27:154:0.387:2	0/1:0,100:29:100:1.00:2	0/1:2,125:28:127:0.984:2	0/1:1,131:28:132:0.992:2	0/1:77,36:30:118:0.319:2	0/1:46,67:29:115:0.593:2	0/1:48,53:28:104:0.525:2
chr1	156450719	rs1185700	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,66:31:117:0.564:2	./.	./.	./.	./.	0/1:20,38:31:58:0.655:2	./.
chr1	156450740	rs1925950	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:31:58:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,124:31:124:1.00:2	0/1:76,60:31:136:0.441:2	0/1:1,147:30:148:0.993:2	0/1:3,113:31:116:0.974:2	0/1:1,114:31:115:0.991:2	0/1:56,45:32:102:0.446:2	0/1:47,18:31:65:0.277:2	0/1:47,51:31:99:0.520:2
chr1	156453096	rs28730744	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,66:31:133:0.496:2	./.	./.	./.	./.	./.	./.	./.
chr1	156497772	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:34:147:0.027:2	./.
chr1	156499969	rs1171566	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:36,27:30:63:0.429:2	0/1:30,18:31:48:0.375:2	./.	0/1:48,40:33:88:0.455:2	./.	./.	./.	0/1:67,41:32:108:0.380:2	0/1:55,37:33:92:0.402:2	0/1:40,25:32:65:0.385:2	./.
chr1	156499977	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:33:95:0.042:2	./.	./.	./.	./.
chr1	156500096	rs115742679	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,33:34:97:0.340:2	./.	./.
chr1	156500974	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:30:105:0.038:2	./.	./.	./.	./.
chr1	156502870	rs4661044	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,76:34:166:0.458:2	./.	./.
chr1	156513841	rs201347788	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,8:15:52:0.154:2	./.	./.	0/1:46,14:16:60:0.233:2	0/1:64,12:13:76:0.158:2	0/1:60,10:17:70:0.143:2	0/1:67,16:14:84:0.193:2	0/1:65,17:14:82:0.207:2	0/1:82,9:17:91:0.099:2	0/1:62,9:19:71:0.127:2	0/1:60,17:22:77:0.221:2
chr1	156517999	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:32:74:0.054:2	./.	./.
chr1	156518379	rs744224	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,49:30:108:0.454:2	./.	./.	./.	0/1:77,44:30:121:0.364:2	./.	0/1:43,28:31:71:0.394:2	./.
chr1	156518408	rs369748008	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:32:127:0.031:2	./.	./.	./.
chr1	156526387	rs11264498	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,28:32:61:0.459:2	0/1:23,18:30:41:0.439:2	0/1:7,9:31:16:0.563:2	0/1:46,43:31:89:0.483:2	0/1:0,119:31:119:1.00:2	0/1:1,103:32:104:0.990:2	0/1:0,141:32:141:1.00:2	0/1:42,42:31:84:0.500:2	0/1:37,51:32:88:0.580:2	0/1:32,31:33:63:0.492:2	0/1:39,44:32:83:0.530:2
chr1	156526430	rs35160849	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:29:16:0.375:2	./.	./.	./.	./.	./.	./.	./.	0/1:36,35:29:71:0.493:2
chr1	156526444	rs2488269	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:32:68:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,100:33:100:1.00:2	0/1:0,135:32:135:1.00:2	0/1:0,98:32:98:1.00:2	0/1:0,177:33:177:1.00:2	0/1:0,129:32:129:1.00:2	0/1:0,92:33:92:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,87:32:87:1.00:2
chr1	156532977	rs1171547	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:33:77:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,85:33:85:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,72:33:72:1.00:2	0/1:1,119:32:120:0.992:2	0/1:0,110:34:110:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,99:32:99:1.00:2
chr1	156536221	rs2066377	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,171:29:171:1.00:2	0/1:0,108:29:108:1.00:2	0/1:0,40:29:40:1.00:2	0/1:1,173:29:174:0.994:2	0/1:0,187:30:188:1.00:2	./.	0/1:0,159:30:159:1.00:2	0/1:2,169:30:171:0.988:2	0/1:0,178:31:178:1.00:2	0/1:1,185:30:186:0.995:2	0/1:0,180:29:180:1.00:2
chr1	156536251	rs947662	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,173:33:174:0.994:2	0/1:0,106:32:106:1.00:2	0/1:0,37:32:37:1.00:2	0/1:1,174:32:175:0.994:2	0/1:0,175:32:176:1.00:2	0/1:0,172:32:172:1.00:2	0/1:0,190:32:190:1.00:2	0/1:4,183:32:187:0.979:2	0/1:0,172:33:172:1.00:2	0/1:0,176:33:177:1.00:2	0/1:2,168:32:170:0.988:2
chr1	156551848	rs6682716	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:32:44:1.00:2	0/1:0,31:32:31:1.00:2	0/1:7,6:34:13:0.462:2	0/1:22,30:33:52:0.577:2	0/1:0,53:32:53:1.00:2	0/1:0,35:33:35:1.00:2	0/1:1,50:33:51:0.980:2	0/1:1,57:33:59:0.983:2	0/1:24,31:34:55:0.564:2	0/1:21,23:33:44:0.523:2	0/1:0,41:32:41:1.00:2
chr1	156553620	rs200375567	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:146,21:13:168:0.126:2	0/1:128,20:10:149:0.135:2	0/1:134,21:15:155:0.135:2	0/1:139,24:13:163:0.147:2	0/1:140,22:13:162:0.136:2	0/1:120,20:12:141:0.143:2	0/1:99,20:18:119:0.168:2	0/1:93,14:14:107:0.131:2
chr1	156556321	rs10796961	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,56:30:56:1.00:2	./.	0/1:0,63:30:63:1.00:2	0/1:0,101:31:101:1.00:2	0/1:0,108:31:108:1.00:2	0/1:38,22:33:60:0.367:2	0/1:0,73:32:73:1.00:2	0/1:0,63:32:63:1.00:2
chr1	156561651	rs7516274	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,5:32:5:1.00:2	0/1:0,5:31:5:1.00:2	./.	0/1:0,6:31:6:1.00:2	0/1:0,2:30:2:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,3:34:3:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,6:31:6:1.00:2
chr1	156563375	rs6427321	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,71:31:71:1.00:2	0/1:27,43:32:70:0.614:2	0/1:0,54:32:54:1.00:2	0/1:0,58:32:58:1.00:2
chr1	156563726	rs6427322	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,21:31:21:1.00:2	0/1:0,14:32:14:1.00:2	./.	0/1:0,46:33:46:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,48:32:48:1.00:2	0/1:26,20:34:46:0.435:2	0/1:3,30:33:33:0.909:2	0/1:0,46:33:46:1.00:2
chr1	156563813	rs6668178	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:31:35:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,41:29:41:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,57:31:57:1.00:2	0/1:44,20:29:64:0.313:2	0/1:0,32:31:32:1.00:2	0/1:0,57:31:57:1.00:2
chr1	156563852	rs942963	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:32:31:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,42:32:42:1.00:2	0/1:46,18:32:64:0.281:2	0/1:0,25:32:25:1.00:2	0/1:0,40:32:40:1.00:2
chr1	156565170	rs34823415	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,82:30:164:0.500:2	./.	./.
chr1	156565218	rs35613498	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,78:33:145:0.538:2	./.	./.
chr1	156568252	rs11264505	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,74:33:174:0.425:2	./.	./.
chr1	156568285	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr1	156571243	rs16837546	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,24:34:62:0.387:2	./.	./.
chr1	156621286	rs147928348	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,15:31:49:0.306:2	./.	./.	./.	./.
chr1	156622252	rs1056695	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,10:31:22:0.455:2	0/1:16,5:32:21:0.238:2	./.	./.	./.	0/1:15,19:31:34:0.559:2	0/1:16,12:29:28:0.429:2	0/1:25,13:32:38:0.342:2	0/1:0,39:31:39:1.00:2	0/1:22,16:31:38:0.421:2	./.
chr1	156628861	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,6:28:28:0.214:2
chr1	156639636	rs11549292	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	0/1:1,27:31:28:0.964:2	./.	./.	./.	0/1:9,15:32:24:0.625:2	./.	0/1:16,11:32:27:0.407:2
chr1	156639753	rs11582300	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:32:12:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,81:31:81:1.00:2	0/1:2,130:31:132:0.985:2	0/1:59,40:31:99:0.404:2	0/1:63,79:31:142:0.556:2	0/1:35,39:32:74:0.527:2	./.	0/1:49,40:32:89:0.449:2
chr1	156640156	rs3748570	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,29:32:29:1.00:2	0/1:8,18:32:26:0.692:2	0/1:18,6:28:24:0.250:2	0/1:15,9:32:24:0.375:2	./.	0/1:16,16:32:33:0.500:2
chr1	156640285	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:31:57:0.070:2	./.	./.	./.	./.	./.
chr1	156640308	rs3748571	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:31:11:1.00:2	./.	0/1:42,43:31:85:0.506:2	./.	./.	./.	0/1:40,31:31:71:0.437:2	./.	0/1:33,32:32:65:0.492:2
chr1	156640503	rs3828043	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	0/1:26,11:30:37:0.297:2	./.	./.	./.	0/1:24,20:32:44:0.455:2	./.	0/1:25,29:31:54:0.537:2
chr1	156640678	rs2886443	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:31:2:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,23:32:23:1.00:2	0/1:1,25:32:26:0.962:2	0/1:9,12:32:21:0.571:2	0/1:15,10:31:25:0.400:2	0/1:12,17:32:29:0.586:2	./.	0/1:14,19:29:33:0.576:2
chr1	156641537	rs951781	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:2,95:32:97:0.979:2	0/1:0,57:32:57:1.00:2	./.	./.	./.	./.	0/1:47,12:32:59:0.203:2	0/1:60,51:32:112:0.459:2	0/1:58,49:32:107:0.458:2	0/1:0,69:32:69:1.00:2	0/1:101,47:32:148:0.318:2
chr1	156698926	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	156705593	rs4311877	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:32:58:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,139:32:139:1.00:2	0/1:0,94:33:94:1.00:2	0/1:0,86:33:86:1.00:2	0/1:0,64:32:64:1.00:2
chr1	156713512	rs4437869	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,40:31:40:1.00:2	0/1:0,18:32:18:1.00:2	./.	0/1:0,39:31:39:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,32:32:32:1.00:2
chr1	156713558	rs4399146	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,22:31:23:0.957:2	0/1:0,22:31:22:1.00:2	0/1:0,2:32:2:1.00:2	./.	0/1:6,12:31:18:0.667:2	0/1:13,16:31:29:0.552:2	./.	0/1:1,34:31:35:0.971:2	./.	./.	0/1:19,18:32:37:0.486:2
chr1	156715134	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:30:83:0.048:2	./.	./.
chr1	156737969	rs11264542	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,16:29:16:1.00:2	0/1:4,4:30:8:0.500:2	./.	./.	./.	0/1:3,8:27:11:0.727:2	./.	./.
chr1	156752048	rs2274503	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,145:31:147:0.993:2	0/1:0,79:31:79:1.00:2	0/1:2,124:32:126:0.984:2	0/1:0,103:31:103:1.00:2	./.	0/1:0,180:33:181:1.00:2	0/1:0,138:32:138:1.00:2	0/1:110,86:31:197:0.439:2
chr1	156760887	rs11264554	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,44:32:73:0.603:2	0/1:0,92:32:92:1.00:2	0/1:45,32:32:77:0.416:2	./.	0/1:42,77:33:119:0.647:2	0/1:0,60:31:60:1.00:2	0/1:53,67:32:120:0.558:2
chr1	156779183	rs12072861	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:31:76:0.053:2	./.	./.	./.
chr1	156784982	rs926103	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,130:32:130:1.00:2	0/1:0,126:32:126:1.00:2	0/1:0,108:32:108:1.00:2	0/1:95,49:33:145:0.340:2	./.	0/1:0,145:33:145:1.00:2	0/1:1,119:33:120:0.992:2	0/1:71,47:32:119:0.398:2
chr1	156785617	rs1800601	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:25,15:32:40:0.375:2	0/1:2,182:32:184:0.989:2	0/1:0,192:32:192:1.00:2	0/1:1,186:32:187:0.995:2	0/1:1,182:32:183:0.995:2	0/1:192,4:32:196:0.020:2	0/1:0,187:33:187:1.00:2	0/1:0,185:32:185:1.00:2	0/1:90,88:32:178:0.494:2
chr1	156814027	rs56252149	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:32:6:1.00:2	0/1:20,18:32:38:0.474:2	0/1:19,21:32:40:0.525:2	./.	./.	./.	0/1:20,8:32:28:0.286:2	0/1:17,13:33:30:0.433:2	./.
chr1	156814363	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,4:31:97:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr1	156816363	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,6:31:121:0.050:2	./.	./.
chr1	156821742	rs55881234	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,30:30:54:0.556:2
chr1	156836751	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:28:69:0.058:2
chr1	156845399	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:31:121:0.033:2	./.	./.	./.	./.
chr1	156845892	rs200575096	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,67:33:130:0.515:2	./.
chr1	156846233	rs6334	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,9:32:20:0.450:2	./.	0/1:94,94:31:188:0.500:2	./.	./.	0/1:89,86:31:175:0.491:2	./.	0/1:2,71:30:73:0.973:2	./.
chr1	156848918	rs6336	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,38:31:100:0.380:2	./.	./.	./.	./.	./.	./.
chr1	156848946	rs6339	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.	0/1:66,37:31:103:0.359:2	./.	./.	./.	./.	./.	./.
chr1	156848995	rs6337	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,25:33:55:0.455:2	0/1:19,17:32:36:0.472:2	0/1:0,6:32:6:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,65:30:65:1.00:2	0/1:38,32:31:70:0.457:2	0/1:4,36:31:40:0.900:2	0/1:51,32:32:83:0.386:2	0/1:1,67:32:68:0.985:2	./.	0/1:1,51:31:52:0.981:2
chr1	156873727	rs12407843	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,13:28:33:0.394:2	./.	0/1:28,26:30:54:0.481:2	./.	./.	./.
chr1	156877457	rs1952294	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,146:32:146:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,144:32:144:1.00:2	0/1:0,109:32:109:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,128:32:128:1.00:2	0/1:0,154:32:154:1.00:2	0/1:0,113:33:113:1.00:2	0/1:0,137:32:137:1.00:2	0/1:0,149:33:149:1.00:2
chr1	156877771	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:33:139:0.029:2	./.	./.	./.	./.
chr1	156877797	rs77235035	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,5:31:15:0.333:2	./.	./.	0/1:74,55:32:129:0.426:2	./.	0/1:90,80:32:170:0.471:2	./.	./.	./.
chr1	156878531	rs11264580	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,7:30:16:0.438:2	./.	./.	./.
chr1	156878737	rs6671392	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,36:30:72:0.500:2	./.	0/1:74,57:30:131:0.435:2	./.	./.	./.
chr1	156879580	rs3737224	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:30:11:0.273:2	./.	./.	0/1:34,42:32:76:0.553:2	./.	0/1:69,35:31:104:0.337:2	./.	./.	./.
chr1	156882996	rs822441	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,5:32:16:0.313:2	./.	0/1:60,46:32:106:0.434:2	0/1:0,63:33:63:1.00:2	./.	0/1:48,52:32:100:0.520:2	./.	./.	./.
chr1	156883215	rs822442	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:27:10:0.400:2	./.	./.	0/1:30,41:29:71:0.577:2	./.	0/1:37,29:30:66:0.439:2	./.	./.	./.
chr1	156883242	rs55864969	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,24:31:40:0.600:2
chr1	156883493	rs11264581	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:15,24:31:39:0.615:2	0/1:17,15:32:32:0.469:2	./.	0/1:22,21:31:43:0.488:2	./.	./.	./.	./.	0/1:36,23:32:59:0.390:2	./.	0/1:20,20:32:40:0.500:2
chr1	156883546	rs12137505	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,27:29:64:0.422:2	0/1:19,19:29:38:0.500:2	0/1:6,9:31:15:0.600:2	0/1:1,105:30:106:0.991:2	./.	./.	0/1:57,42:29:99:0.424:2	./.	0/1:55,36:31:91:0.396:2	./.	0/1:38,26:28:64:0.406:2
chr1	156884584	rs56260937	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,19:31:37:0.528:2	0/1:20,15:32:35:0.429:2	./.	./.	./.	0/1:53,40:31:93:0.430:2	0/1:80,52:31:132:0.394:2	0/1:50,53:31:103:0.515:2	./.	./.	./.
chr1	156890619	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,4:31:26:0.154:2	./.	./.	./.	./.	./.	./.	./.
chr1	156890672	rs41273221	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:5,5:31:10:0.500:2	./.	./.	./.	./.	0/1:6,4:32:10:0.400:2	0/1:17,12:29:29:0.414:2	./.	./.	./.
chr1	156894256	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:32:44:0.091:2	./.	./.	./.
chr1	156894486	rs145905660	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,3:32:13:0.231:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	156902222	rs12119908	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:43,26:32:69:0.377:2	0/1:12,16:31:28:0.571:2	0/1:5,8:32:13:0.615:2	./.	./.	0/1:68,62:31:130:0.477:2	0/1:79,64:31:143:0.448:2	0/1:99,66:31:165:0.400:2	./.	./.	./.
chr1	156902259	rs822430	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,104:32:106:0.981:2	0/1:0,43:32:43:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,125:32:125:1.00:2	0/1:103,86:32:190:0.455:2	0/1:0,179:32:179:1.00:2	0/1:92,98:32:190:0.516:2	0/1:118,74:32:192:0.385:2	0/1:90,78:33:168:0.464:2	./.	0/1:72,57:32:129:0.442:2
chr1	156902281	rs822431	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:66,46:29:112:0.411:2	0/1:26,20:30:46:0.435:2	0/1:7,12:31:19:0.632:2	./.	./.	0/1:92,94:30:186:0.505:2	0/1:94,96:29:190:0.505:2	0/1:114,67:30:181:0.370:2	./.	./.	./.
chr1	156902701	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:32:74:0.054:2
chr1	156907081	rs945508	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,189:30:191:0.995:2	0/1:4,129:29:133:0.970:2	0/1:0,33:30:33:1.00:2	0/1:0,176:30:176:1.00:2	0/1:101,95:29:196:0.485:2	0/1:2,181:30:183:0.989:2	0/1:125,71:30:196:0.362:2	0/1:95,93:30:188:0.495:2	0/1:0,177:29:177:1.00:2	./.	0/1:112,78:29:190:0.411:2
chr1	156907115	rs868188	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:99,87:32:186:0.468:2	0/1:57,75:32:133:0.568:2	0/1:15,19:33:34:0.559:2	0/1:4,162:31:166:0.976:2	0/1:110,84:32:194:0.433:2	0/1:98,75:32:173:0.434:2	./.	./.	0/1:1,190:32:191:0.995:2	./.	0/1:102,79:33:181:0.436:2
chr1	156909695	rs2275199	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	./.	./.	./.	0/1:3,3:29:6:0.500:2	0/1:5,7:29:12:0.583:2	0/1:9,4:33:13:0.308:2	./.	./.	./.
chr1	156910041	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,4:30:120:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr1	156918137	rs12138039	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,58:31:130:0.446:2	./.	0/1:56,57:31:114:0.504:2
chr1	156928840	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,61:30:136:0.449:2	./.	./.	./.	./.	./.	./.	./.
chr1	156939067	rs2275206	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,8:32:26:0.308:2	0/1:4,5:32:9:0.556:2	./.	./.	./.	0/1:16,13:29:29:0.448:2	0/1:32,22:29:54:0.407:2	0/1:31,36:30:67:0.537:2	./.	./.	./.
chr1	157062696	rs1176537	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,11:31:21:0.524:2	0/1:19,17:29:36:0.472:2	./.	0/1:1,26:30:27:0.963:2	0/1:6,22:31:28:0.786:2
chr1	157062739	rs12136960	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,9:31:28:0.333:2	./.	0/1:8,9:29:17:0.529:2	./.	./.	./.	./.
chr1	157069134	rs61730132	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,37:30:81:0.457:2	./.	./.	./.	./.	./.
chr1	157069154	rs16838075	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,21:30:47:0.447:2	./.	./.	./.	./.
chr1	157095315	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:30:133:0.030:2	./.	./.	./.	./.
chr1	157095470	rs2231856	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,56:31:109:0.514:2	./.
chr1	157485504	rs115493285	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,14:33:33:0.424:2	0/1:15,11:33:26:0.423:2	./.	./.	0/1:22,13:32:35:0.371:2	0/1:21,23:31:44:0.523:2	./.	./.	./.	./.	./.
chr1	157489516	rs1332714	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,6:31:18:0.333:2	0/1:95,94:33:189:0.497:2	./.	./.	./.	0/1:100,90:32:190:0.474:2	0/1:0,185:33:185:1.00:2	./.	./.
chr1	157497597	rs73011545	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,34:31:53:0.642:2	./.	./.	./.	./.	./.
chr1	157504466	rs141517034	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,56:33:98:0.571:2	./.	./.
chr1	157508882	rs6427384	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:30:36:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,4:29:4:1.00:2	0/1:0,36:32:36:1.00:2	0/1:2,35:31:37:0.946:2	0/1:32,31:30:63:0.492:2	0/1:1,23:31:24:0.958:2	0/1:1,55:31:56:0.982:2	0/1:0,40:32:40:1.00:2	0/1:0,37:31:38:1.00:2	0/1:24,15:33:39:0.385:2
chr1	157509005	rs62640945	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,34:32:63:0.540:2	./.	./.	./.	./.	./.	./.	./.
chr1	157509025	rs2012199	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:31:56:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,7:30:7:1.00:2	0/1:2,67:31:69:0.971:2	0/1:0,69:31:69:1.00:2	0/1:41,49:31:90:0.544:2	0/1:0,80:32:80:1.00:2	0/1:1,69:31:70:0.986:2	0/1:0,83:31:83:1.00:2	0/1:0,45:31:45:1.00:2	0/1:33,32:32:65:0.492:2
chr1	157514091	rs12036228	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:52,39:32:91:0.429:2	0/1:22,10:31:32:0.313:2	./.	0/1:54,39:31:93:0.419:2	0/1:0,88:31:88:1.00:2	0/1:52,70:31:122:0.574:2	0/1:168,4:33:172:0.023:2	./.	./.	./.	./.
chr1	157514097	rs6679793	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:33:92:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,12:33:12:1.00:2	0/1:54,42:33:96:0.438:2	0/1:0,89:32:89:1.00:2	0/1:1,126:32:127:0.992:2	0/1:0,164:33:164:1.00:2	0/1:83,56:33:139:0.403:2	0/1:1,123:34:124:0.992:2	0/1:0,109:33:109:1.00:2	0/1:53,61:33:114:0.535:2
chr1	157519311	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:123,6:30:129:0.047:2	./.	./.	./.	./.	./.	./.
chr1	157519320	rs201192568	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:127,6:32:133:0.045:2	./.	./.	./.	./.	./.	./.
chr1	157548597	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,4:33:114:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr1	157557701	rs2777962	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:51,36:31:87:0.414:2	0/1:39,21:32:60:0.350:2	./.	0/1:57,40:32:97:0.412:2	./.	0/1:44,50:31:94:0.532:2	0/1:1,53:32:54:0.981:2	0/1:1,72:31:73:0.986:2	./.	0/1:0,60:32:60:1.00:2	0/1:61,50:33:111:0.450:2
chr1	157559122	rs11582663	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:109,83:33:192:0.432:2	0/1:111,67:32:178:0.376:2	./.	./.	./.	./.	./.	0/1:91,95:33:186:0.511:2	./.	0/1:123,69:33:192:0.359:2	0/1:119,75:33:194:0.387:2
chr1	157567751	rs1361889	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,151:31:152:0.993:2	0/1:0,102:32:102:1.00:2	0/1:9,8:33:17:0.471:2	0/1:0,168:32:168:1.00:2	0/1:0,155:31:155:1.00:2	0/1:0,162:32:162:1.00:2	0/1:0,154:32:154:1.00:2	0/1:0,184:31:184:1.00:2	./.	0/1:0,165:32:165:1.00:2	0/1:0,165:31:165:1.00:2
chr1	157650803	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,3:27:15:0.200:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	157665225	rs200922617	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,49:32:95:0.516:2	./.	./.	./.	./.	./.	./.	./.
chr1	157667162	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,6:31:65:0.092:2	./.	./.	./.	./.
chr1	157667166	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,6:30:69:0.087:2	./.	./.	./.	./.
chr1	157667198	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,6:33:65:0.092:2	./.	./.	./.	./.
chr1	157668390	rs7522061	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:80,59:28:139:0.424:2	0/1:46,53:28:99:0.535:2	0/1:16,5:27:21:0.238:2	0/1:68,49:29:117:0.419:2	0/1:88,59:28:147:0.401:2	0/1:1,132:29:133:0.992:2	./.	0/1:152,6:27:158:0.038:2	0/1:69,72:30:141:0.511:2	./.	0/1:89,56:28:145:0.386:2
chr1	157670290	rs945635	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,39:30:85:0.459:2	0/1:18,19:29:37:0.514:2	./.	0/1:49,40:30:89:0.449:2	0/1:51,30:29:81:0.370:2	0/1:0,91:30:91:1.00:2	./.	./.	0/1:39,42:31:81:0.519:2	./.	0/1:54,43:30:97:0.443:2
chr1	157718325	rs3818813	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:57,50:28:107:0.467:2	0/1:18,27:28:45:0.600:2	./.	./.	0/1:72,87:28:159:0.547:2	0/1:0,146:28:146:1.00:2	./.	./.	./.	./.	0/1:61,50:29:111:0.450:2
chr1	157718696	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:33:48:0.083:2	./.
chr1	157768000	rs3811024	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,5:28:16:0.313:2	0/1:94,58:29:152:0.382:2	./.	./.	./.	./.	./.	./.	./.
chr1	157771880	rs4971154	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,39:31:94:0.415:2	0/1:35,20:32:55:0.364:2	./.	./.	./.	0/1:51,36:31:87:0.414:2	0/1:3,81:31:84:0.964:2	0/1:2,90:31:92:0.978:2	0/1:1,100:32:101:0.990:2	0/1:1,77:32:78:0.987:2	0/1:54,51:31:105:0.486:2
chr1	157771966	rs145252437	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,29:32:72:0.403:2	./.	./.	./.
chr1	157804362	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,4:29:74:0.054:2	./.	./.	./.	./.	./.	./.	./.
chr1	158045965	rs191487619	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,39:32:97:0.402:2	./.	./.	./.
chr1	158057633	rs36008419	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:29:10:0.500:2	0/1:53,39:31:92:0.424:2	./.	./.	0/1:3,83:30:86:0.965:2	./.	./.	./.	0/1:40,32:30:72:0.444:2
chr1	158224904	rs2269714	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,36:32:91:0.396:2
chr1	158225019	rs2269715	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,69:32:143:0.483:2
chr1	158263284	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,13:32:19:0.684:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	158324425	rs1065457	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,34:30:79:0.430:2	./.	0/1:50,47:30:97:0.485:2	0/1:75,44:30:119:0.370:2	0/1:36,35:31:71:0.493:2	0/1:59,44:30:104:0.427:2
chr1	158325624	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:32:110:0.036:2
chr1	158325640	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,5:31:175:0.029:2	./.	./.	0/1:115,4:30:119:0.034:2
chr1	158325657	.	C	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:111,5:28:116:0.043:2	./.	./.	./.	./.	./.	./.	0/1:192,6:30:198:0.030:2	./.	./.	0/1:136,4:32:140:0.029:2
chr1	158368541	rs34465440	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,73:32:145:0.507:2	0/1:69,76:32:145:0.524:2	0/1:90,60:33:150:0.400:2	0/1:74,60:32:134:0.448:2	0/1:79,61:32:140:0.436:2
chr1	158368846	rs6662382	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,44:33:88:0.500:2	0/1:49,55:33:104:0.529:2	0/1:53,37:32:90:0.411:2	0/1:68,45:32:113:0.398:2	0/1:75,41:33:116:0.353:2
chr1	158368964	rs61818749	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,47:31:112:0.420:2	./.	0/1:63,45:31:108:0.417:2	./.	0/1:38,33:30:71:0.465:2
chr1	158368974	rs61818750	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,45:33:108:0.417:2	./.	0/1:65,49:33:114:0.430:2	./.	0/1:37,31:33:68:0.456:2
chr1	158369064	rs41488350	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,19:32:58:0.328:2	./.	0/1:28,33:33:61:0.541:2	./.	0/1:20,21:33:41:0.512:2
chr1	158390224	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,4:31:20:0.200:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	158390252	rs12239443	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:82,92:33:174:0.529:2	0/1:46,63:33:109:0.578:2	0/1:19,4:32:23:0.174:2	./.	./.	./.	./.	0/1:3,180:33:183:0.984:2	0/1:102,91:33:193:0.472:2	0/1:79,90:32:169:0.533:2	0/1:75,111:33:186:0.597:2
chr1	158390431	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:32:191:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	158390501	rs34616883	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:93,86:30:179:0.480:2	0/1:66,39:31:105:0.371:2	./.	./.	./.	./.	./.	0/1:2,156:30:158:0.987:2	0/1:96,81:31:177:0.458:2	0/1:84,95:31:179:0.531:2	0/1:81,90:31:171:0.526:2
chr1	158435928	rs41273489	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,97:33:188:0.516:2	./.	0/1:93,95:33:188:0.505:2	./.
chr1	158436267	rs371161558	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:32:67:0.060:2	./.	./.	./.	./.
chr1	158450192	rs61741711	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,72:31:159:0.453:2	./.	0/1:91,50:31:141:0.355:2	./.
chr1	158450238	rs3820678	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,81:32:158:0.516:2	./.	./.	./.
chr1	158450314	rs6679056	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:99,83:33:182:0.456:2	0/1:90,68:32:158:0.430:2	./.	./.	0/1:183,4:34:187:0.021:2	0/1:106,75:32:181:0.414:2	0/1:77,109:33:186:0.586:2	0/1:3,181:33:184:0.984:2	0/1:106,85:34:191:0.445:2	0/1:82,97:32:179:0.542:2	0/1:92,91:32:183:0.497:2
chr1	158450382	rs1418843	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,67:32:157:0.427:2	0/1:49,37:32:86:0.430:2	./.	./.	./.	0/1:82,68:31:150:0.453:2	0/1:59,59:31:118:0.500:2	0/1:78,61:31:139:0.439:2	0/1:76,66:32:142:0.465:2	./.	0/1:90,71:31:161:0.441:2
chr1	158517142	rs41273491	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,38:31:95:0.400:2	0/1:28,26:31:54:0.481:2	./.	./.	./.	0/1:61,50:31:111:0.450:2	0/1:59,61:32:120:0.508:2	./.	0/1:79,55:32:134:0.410:2	./.	0/1:55,62:32:118:0.530:2
chr1	158517353	rs16840314	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,54:32:106:0.509:2	0/1:24,24:32:48:0.500:2	./.	./.	./.	0/1:90,71:30:161:0.441:2	0/1:66,51:32:117:0.436:2	./.	0/1:66,59:32:125:0.472:2	./.	0/1:56,59:32:115:0.513:2
chr1	158532614	rs41273499	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:32:5:1.00:2	0/1:83,63:31:146:0.432:2	0/1:2,114:31:116:0.983:2	./.	./.	./.	./.	./.	./.
chr1	158533140	rs12080815	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,28:32:48:0.583:2	0/1:10,13:33:23:0.565:2	./.	./.	./.	0/1:32,25:31:57:0.439:2	0/1:33,42:32:75:0.560:2	0/1:38,28:32:66:0.424:2	0/1:22,25:32:47:0.532:2	./.	0/1:27,22:32:49:0.449:2
chr1	158533224	rs12081915	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,28:31:52:0.538:2	0/1:18,15:31:33:0.455:2	./.	./.	./.	0/1:39,32:32:71:0.451:2	0/1:38,39:31:77:0.506:2	0/1:52,28:31:81:0.350:2	0/1:36,29:33:65:0.446:2	./.	0/1:37,28:30:65:0.431:2
chr1	158549264	rs863360	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,86:32:198:0.434:2	0/1:59,50:32:109:0.459:2	./.	./.	./.	0/1:109,86:31:195:0.441:2	0/1:119,79:31:198:0.399:2	0/1:118,75:31:193:0.389:2	0/1:102,95:32:197:0.482:2	./.	0/1:101,95:32:196:0.485:2
chr1	158549420	rs863361	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,46:31:106:0.434:2	0/1:34,26:31:61:0.433:2	./.	./.	./.	0/1:85,69:31:154:0.448:2	0/1:97,75:32:172:0.436:2	0/1:76,64:32:140:0.457:2	0/1:87,71:32:158:0.449:2	./.	0/1:70,57:31:128:0.449:2
chr1	158549421	rs77690058	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,67:32:134:0.500:2	./.	0/1:59,45:32:104:0.433:2	./.
chr1	158549492	rs863362	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,36:32:90:0.400:2	0/1:27,25:32:52:0.481:2	./.	./.	./.	0/1:63,49:32:112:0.438:2	0/1:55,38:32:93:0.409:2	0/1:53,34:31:87:0.391:2	0/1:49,56:33:105:0.533:2	./.	0/1:50,40:32:90:0.444:2
chr1	158549511	rs863363	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,27:32:74:0.365:2	0/1:25,24:32:49:0.490:2	./.	./.	./.	0/1:50,43:31:93:0.462:2	0/1:42,30:31:72:0.417:2	0/1:50,30:32:80:0.375:2	0/1:40,40:33:80:0.500:2	./.	0/1:45,35:32:80:0.438:2
chr1	158577109	rs857685	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,37:32:64:0.578:2	0/1:23,22:32:45:0.489:2	./.	./.	./.	0/1:33,32:31:65:0.492:2	0/1:27,36:32:63:0.571:2	./.	0/1:54,39:34:93:0.419:2	./.	0/1:54,48:33:102:0.471:2
chr1	158577167	rs2427808	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:18,18:31:36:0.500:2	0/1:16,8:31:24:0.333:2	./.	0/1:19,15:31:34:0.441:2	./.	./.	0/1:35,14:31:49:0.286:2	./.	./.	./.	./.
chr1	158582646	rs2251969	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,44:30:105:0.419:2	0/1:30,23:30:53:0.434:2	./.	./.	./.	0/1:69,58:30:127:0.457:2	0/1:2,64:30:66:0.970:2	0/1:3,92:29:95:0.968:2	0/1:64,71:30:135:0.526:2	0/1:50,47:31:97:0.485:2	0/1:86,71:30:157:0.452:2
chr1	158584091	rs952094	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,17:31:36:0.472:2	0/1:12,10:29:22:0.455:2	./.	./.	./.	0/1:19,22:30:41:0.537:2	0/1:1,21:30:22:0.955:2	0/1:1,47:32:48:0.979:2	0/1:36,21:31:57:0.368:2	0/1:19,15:30:35:0.441:2	0/1:39,36:31:75:0.480:2
chr1	158585029	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:32:180:0.022:2	./.	./.	./.	./.
chr1	158587390	rs857716	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,67:32:112:0.598:2	0/1:30,34:32:64:0.531:2	./.	./.	./.	0/1:59,84:31:144:0.587:2	0/1:0,90:32:90:1.00:2	0/1:1,143:31:144:0.993:2	0/1:84,64:32:148:0.432:2	0/1:70,44:31:114:0.386:2	0/1:74,64:32:138:0.464:2
chr1	158587858	rs28525570	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,137:32:138:0.993:2	./.	0/1:71,53:32:124:0.427:2	./.
chr1	158589105	rs138055271	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,64:29:159:0.403:2	0/1:36,29:29:65:0.446:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	158592935	rs3753068	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,137:33:139:0.986:2	./.	0/1:103,71:33:174:0.408:2	./.
chr1	158597507	rs3737515	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,43:32:43:1.00:2	./.	0/1:22,15:31:37:0.405:2	./.
chr1	158606449	rs3738791	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,53:31:53:1.00:2	./.	0/1:14,37:31:51:0.725:2	./.
chr1	158607935	rs857725	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,27:33:39:0.692:2	0/1:18,17:33:35:0.486:2	./.	./.	./.	0/1:37,32:33:69:0.464:2	0/1:1,22:32:23:0.957:2	./.	0/1:32,26:33:58:0.448:2	./.	0/1:25,26:33:51:0.510:2
chr1	158612236	rs863931	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,89:29:190:0.468:2	0/1:73,54:29:127:0.425:2	./.	./.	./.	0/1:112,75:29:187:0.401:2	0/1:1,184:30:185:0.995:2	0/1:2,177:30:179:0.989:2	0/1:102,81:29:183:0.443:2	0/1:102,92:30:194:0.474:2	0/1:112,73:28:185:0.395:2
chr1	158619728	rs2482965	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:33:80:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,89:33:89:1.00:2	0/1:0,78:33:78:1.00:2	0/1:0,70:33:70:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,92:33:92:1.00:2	0/1:0,104:33:104:1.00:2	0/1:0,65:33:65:1.00:2	0/1:0,118:33:118:1.00:2
chr1	158626378	rs857691	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,23:31:42:0.548:2	0/1:8,13:31:21:0.619:2	./.	./.	./.	0/1:23,21:29:44:0.477:2	0/1:25,22:30:47:0.468:2	./.	0/1:28,33:31:61:0.541:2	./.	0/1:30,31:32:61:0.508:2
chr1	158631171	rs2518493	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,96:33:169:0.568:2	0/1:44,43:33:87:0.494:2	./.	./.	./.	0/1:98,73:32:171:0.427:2	0/1:47,52:32:99:0.525:2	./.	0/1:89,88:33:177:0.497:2	./.	0/1:75,87:33:162:0.537:2
chr1	158644366	rs200605336	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,10:13:67:0.149:2	./.	./.	./.	./.	./.
chr1	158647495	rs325996	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,119:33:119:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,120:33:120:1.00:2	0/1:0,120:32:120:1.00:2	0/1:0,148:32:148:1.00:2	0/1:0,158:32:158:1.00:2	0/1:0,173:32:173:1.00:2	0/1:0,144:34:144:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,156:33:156:1.00:2
chr1	158647522	rs703121	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,125:32:126:1.00:2	0/1:0,71:32:71:1.00:2	./.	./.	./.	0/1:1,150:33:151:0.993:2	0/1:4,161:32:165:0.976:2	0/1:93,84:32:177:0.475:2	0/1:0,159:33:159:1.00:2	0/1:81,61:32:142:0.430:2	0/1:0,158:32:158:1.00:2
chr1	158655036	rs435080	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,83:31:83:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,58:31:59:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,79:32:79:1.00:2	0/1:2,71:31:73:0.973:2	0/1:0,91:31:91:1.00:2
chr1	158656281	rs2564858	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:33:59:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,23:32:23:1.00:2	0/1:2,51:32:53:0.962:2	0/1:0,26:32:26:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,76:33:76:1.00:2
chr1	158687163	rs28568406	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,40:32:92:0.435:2	0/1:31,33:33:64:0.516:2	./.	./.	./.	0/1:59,59:32:118:0.500:2	0/1:0,95:32:95:1.00:2	0/1:56,51:33:107:0.477:2	0/1:0,102:34:102:1.00:2	0/1:54,47:33:101:0.465:2	0/1:2,114:33:116:0.983:2
chr1	158687224	rs857703	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,34:31:66:0.515:2	0/1:31,22:31:53:0.415:2	./.	./.	./.	0/1:57,52:31:109:0.477:2	0/1:0,84:31:84:1.00:2	0/1:58,45:32:103:0.437:2	0/1:0,86:32:86:1.00:2	0/1:44,41:30:85:0.482:2	0/1:0,77:31:77:1.00:2
chr1	158687318	rs139396690	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,90:30:197:0.457:2	./.	./.	./.	./.	./.
chr1	158687896	rs857705	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,30:33:67:0.448:2	0/1:23,20:32:43:0.465:2	./.	./.	./.	0/1:43,36:32:79:0.456:2	./.	./.	./.	./.	./.
chr1	158724811	rs114533687	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,82:31:168:0.488:2	./.	./.	./.
chr1	158724844	rs16840980	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:32:147:0.027:2	./.	./.	./.
chr1	158725080	rs16841001	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,39:31:87:0.448:2	0/1:71,48:33:119:0.403:2	0/1:57,44:32:101:0.436:2	./.	0/1:46,45:33:91:0.495:2	./.
chr1	158735595	rs857824	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,35:31:71:0.493:2	0/1:25,22:31:47:0.468:2	0/1:0,6:31:6:1.00:2	0/1:0,68:31:68:1.00:2	0/1:1,72:31:73:0.986:2	0/1:41,36:31:77:0.468:2	./.	0/1:50,40:31:90:0.444:2	0/1:0,94:33:94:1.00:2	./.	0/1:1,71:32:72:0.986:2
chr1	158735691	rs857825	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,42:31:120:0.350:2	0/1:23,32:28:55:0.582:2	0/1:0,23:31:23:1.00:2	0/1:0,99:30:99:1.00:2	0/1:3,132:30:135:0.978:2	0/1:80,58:30:138:0.420:2	./.	0/1:99,97:30:196:0.495:2	0/1:0,144:31:144:1.00:2	./.	0/1:1,103:30:104:0.990:2
chr1	158735740	rs857826	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:79,50:33:129:0.388:2	0/1:30,35:32:65:0.538:2	0/1:0,28:32:28:1.00:2	0/1:0,126:33:126:1.00:2	0/1:2,156:32:158:0.987:2	0/1:79,72:32:151:0.477:2	./.	0/1:86,97:33:184:0.530:2	0/1:0,164:34:164:1.00:2	./.	0/1:0,137:33:138:1.00:2
chr1	158735892	rs857827	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,50:33:80:0.625:2	0/1:17,21:32:38:0.553:2	0/1:0,8:32:8:1.00:2	0/1:0,101:33:101:1.00:2	0/1:0,93:32:93:1.00:2	0/1:52,43:32:95:0.453:2	./.	0/1:66,49:32:115:0.426:2	0/1:0,120:33:120:1.00:2	./.	0/1:0,102:32:102:1.00:2
chr1	158736215	rs6666753	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:31:47:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,29:30:29:1.00:2	0/1:19,24:29:43:0.558:2	0/1:0,31:30:31:1.00:2	0/1:0,44:30:44:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,37:30:37:1.00:2	0/1:29,26:31:55:0.473:2
chr1	158736217	rs857828	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,29:32:56:0.518:2
chr1	158736445	rs1864346	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,7:31:12:0.583:2	0/1:5,7:32:12:0.583:2	./.	./.	./.	./.	./.	./.	0/1:12,15:31:28:0.556:2	./.	./.
chr1	158746646	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:33:165:0.024:2	./.	./.	./.	./.
chr1	158746678	rs41273541	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,76:31:160:0.475:2	./.	0/1:97,68:30:165:0.412:2
chr1	158746847	rs16841094	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,52:30:74:0.703:2	./.	0/1:61,26:30:87:0.299:2	./.	0/1:53,34:29:87:0.391:2
chr1	158747043	rs140526095	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,54:29:108:0.500:2	0/1:33,34:28:67:0.507:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	158813819	rs857870	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,30:28:30:1.00:2	0/1:0,27:28:27:1.00:2	0/1:3,3:29:6:0.500:2	./.	0/1:1,29:29:30:0.967:2	0/1:32,14:29:46:0.304:2	0/1:19,21:30:40:0.525:2	0/1:30,20:28:50:0.400:2	0/1:27,15:30:42:0.357:2	0/1:21,21:27:42:0.500:2	0/1:30,24:29:54:0.444:2
chr1	158815443	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,64:31:147:0.435:2	./.	./.	./.	./.	./.	./.	./.
chr1	158986430	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:32:158:0.025:2	./.	./.	./.	./.	./.
chr1	158986477	rs866484	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,44:31:122:0.361:2	0/1:67,39:32:106:0.368:2	0/1:8,15:32:23:0.652:2	0/1:96,85:32:181:0.470:2	0/1:2,139:32:141:0.986:2	0/1:2,152:32:154:0.987:2	0/1:106,55:32:161:0.342:2	0/1:0,160:32:160:1.00:2	0/1:3,170:33:174:0.983:2	0/1:1,135:32:136:0.993:2	0/1:0,161:32:161:1.00:2
chr1	158988270	rs11539423	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,23:30:50:0.460:2	./.	./.	./.	./.
chr1	158990242	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,44:32:101:0.436:2	./.
chr1	158990247	rs1057024	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,28:33:83:0.337:2	0/1:29,23:32:52:0.442:2	0/1:2,5:33:7:0.714:2	0/1:53,36:33:89:0.404:2	./.	0/1:57,38:33:95:0.400:2	./.	./.	./.	./.	./.
chr1	159002377	rs1057027	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,19:30:40:0.475:2	0/1:8,7:32:15:0.467:2	./.	0/1:26,21:32:47:0.447:2	0/1:0,28:32:28:1.00:2	0/1:20,21:31:41:0.512:2	0/1:21,11:33:32:0.344:2	0/1:1,37:32:38:0.974:2	0/1:0,35:31:35:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,39:31:39:1.00:2
chr1	159002389	rs1057028	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,20:32:44:0.455:2	0/1:10,8:33:18:0.444:2	./.	0/1:36,24:31:60:0.400:2	0/1:0,31:31:31:1.00:2	0/1:23,23:31:47:0.500:2	0/1:24,14:31:38:0.368:2	0/1:1,51:31:52:0.981:2	0/1:0,45:32:45:1.00:2	0/1:0,34:32:34:1.00:2	0/1:1,41:31:42:0.976:2
chr1	159015196	rs200732327	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,63:32:197:0.320:2	./.	./.
chr1	159019331	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,20:32:192:0.104:2	./.	./.
chr1	159021506	rs62621173	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,23:32:45:0.511:2	./.	./.	./.	./.
chr1	159024668	rs6940	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,53:32:125:0.424:2	0/1:69,37:32:106:0.349:2	0/1:7,10:32:17:0.588:2	0/1:65,52:32:118:0.444:2	./.	0/1:63,37:31:100:0.370:2	./.	./.	./.	./.	./.
chr1	159163779	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:31:152:0.026:2	./.
chr1	159169593	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:32:127:0.031:2	./.	./.
chr1	159169641	rs862999	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,95:30:96:0.990:2	0/1:0,53:30:53:1.00:2	0/1:13,16:29:29:0.552:2	0/1:2,107:30:109:0.982:2	0/1:0,173:30:173:1.00:2	0/1:3,123:29:126:0.976:2	0/1:113,77:30:190:0.405:2	0/1:0,171:30:171:1.00:2	0/1:1,121:30:122:0.992:2	0/1:53,38:29:91:0.418:2	./.
chr1	159175354	rs12075	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,138:31:139:0.993:2	0/1:0,65:32:65:1.00:2	./.	0/1:1,117:31:118:0.992:2	0/1:5,113:31:119:0.958:2	0/1:68,78:31:146:0.534:2	0/1:81,67:31:148:0.453:2	0/1:87,87:31:174:0.500:2	0/1:78,92:32:170:0.541:2	0/1:0,109:31:110:1.00:2	./.
chr1	159175527	rs13962	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,105:31:108:0.972:2	0/1:1,69:31:70:0.986:2	./.	0/1:84,70:31:154:0.455:2	0/1:81,74:31:155:0.477:2	./.	./.	./.	0/1:63,55:32:118:0.466:2	./.	./.
chr1	159277689	rs41264475	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,32:31:49:0.667:2	./.	./.	./.
chr1	159283494	rs58037016	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,20:33:45:0.444:2	./.	./.	./.	0/1:60,38:32:98:0.388:2
chr1	159283746	rs11265165	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:27:12:0.417:2	./.	./.	./.	0/1:42,43:27:85:0.506:2	./.	./.	./.	0/1:51,42:27:93:0.452:2
chr1	159283884	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,4:33:61:0.066:2	./.	./.	./.	./.	./.	./.	./.
chr1	159409734	rs10908722	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,175:32:175:1.00:2	0/1:0,159:31:159:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,191:31:191:1.00:2	0/1:0,184:32:184:1.00:2	0/1:0,190:31:190:1.00:2	0/1:0,180:32:180:1.00:2	0/1:0,188:32:188:1.00:2	0/1:0,189:32:189:1.00:2	0/1:0,178:32:178:1.00:2	0/1:0,183:32:183:1.00:2
chr1	159409757	rs35634161	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,83:30:184:0.451:2	./.	./.	./.	./.	./.	./.	./.
chr1	159409857	rs12048482	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,133:32:135:0.985:2	0/1:0,86:32:86:1.00:2	./.	0/1:85,71:31:156:0.455:2	0/1:1,101:31:102:0.990:2	0/1:67,62:31:129:0.481:2	0/1:62,63:31:125:0.504:2	0/1:2,137:31:139:0.986:2	0/1:0,159:32:159:1.00:2	0/1:0,114:32:114:1.00:2	./.
chr1	159409884	rs12118628	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:29:9:0.556:2	./.	./.	0/1:73,56:29:129:0.434:2	./.	./.	./.	./.	0/1:73,68:31:141:0.482:2
chr1	159410101	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:32:195:0.021:2	./.
chr1	159410217	rs41264477	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:110,63:30:173:0.364:2	./.	./.	./.	./.	./.	./.
chr1	159505101	rs35393723	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:59,41:33:100:0.410:2	0/1:32,23:32:55:0.418:2	./.	0/1:42,64:32:106:0.604:2	./.	./.	./.	./.	./.	0/1:36,48:32:84:0.571:2	./.
chr1	159505297	rs4656837	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,57:32:105:0.543:2	0/1:52,29:31:81:0.358:2	0/1:10,4:32:14:0.286:2	0/1:64,73:31:137:0.533:2	0/1:0,86:32:86:1.00:2	0/1:1,134:31:135:0.993:2	0/1:55,57:32:112:0.509:2	0/1:1,113:32:114:0.991:2	0/1:0,129:33:129:1.00:2	0/1:50,55:32:105:0.524:2	0/1:80,59:32:139:0.424:2
chr1	159557959	rs145110984	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,34:31:69:0.493:2
chr1	159558258	rs2808661	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:32:8:1.00:2	0/1:0,83:33:83:1.00:2	0/1:0,42:32:42:1.00:2	0/1:29,24:32:53:0.453:2	0/1:0,31:32:31:1.00:2	0/1:0,69:32:69:1.00:2	0/1:39,44:33:83:0.530:2	0/1:28,21:33:49:0.429:2	0/1:0,84:32:84:1.00:2
chr1	159752066	rs1129923	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,89:32:167:0.539:2	./.	0/1:65,81:32:146:0.555:2	./.	0/1:0,126:32:126:1.00:2
chr1	159776366	rs61821626	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,76:29:77:0.987:2	./.	./.	./.	0/1:80,86:31:166:0.518:2	./.	./.
chr1	159778910	rs72700615	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,51:30:52:0.981:2	./.	./.	./.	0/1:51,47:31:99:0.480:2	./.	./.
chr1	159778983	rs12083967	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,52:30:52:1.00:2	./.	./.	./.	0/1:37,37:30:74:0.500:2	./.	./.
chr1	159785284	rs4411129	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,33:33:77:0.429:2	0/1:21,20:33:41:0.488:2	0/1:0,14:32:14:1.00:2	0/1:0,112:33:112:1.00:2	0/1:0,124:32:124:1.00:2	0/1:0,107:32:107:1.00:2	0/1:94,65:32:160:0.409:2	0/1:122,71:32:193:0.368:2	0/1:70,74:33:144:0.514:2	0/1:0,85:32:85:1.00:2	0/1:51,51:32:102:0.500:2
chr1	159785413	rs61823162	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,29:30:29:1.00:2	./.	./.	./.	0/1:26,38:32:64:0.594:2	./.	./.
chr1	159785425	rs4443889	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,27:32:27:1.00:2	./.	./.	./.	0/1:25,30:33:55:0.545:2	./.	./.
chr1	159799910	rs34687326	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,22:32:41:0.537:2	./.	0/1:25,33:33:58:0.569:2	./.	0/1:17,19:31:36:0.528:2
chr1	159810939	rs41264825	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,94:31:94:1.00:2	./.	./.	./.	./.	./.
chr1	159824967	rs2501340	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,98:33:98:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,120:33:120:1.00:2	0/1:92,56:32:148:0.378:2	./.	0/1:1,120:33:121:0.992:2	0/1:0,133:32:133:1.00:2	0/1:1,106:34:107:0.991:2	0/1:0,76:33:76:1.00:2	0/1:0,60:33:60:1.00:2
chr1	159828613	rs62624468	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	159850401	rs7550537	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,87:33:191:0.455:2	./.	./.
chr1	159854251	rs16842789	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2
chr1	159888664	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:34:131:0.031:2	./.	./.	./.
chr1	159890237	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:33:163:0.025:2	./.	./.	./.	./.
chr1	159898100	rs3747615	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,7:29:26:0.269:2	./.	./.	0/1:7,12:30:19:0.632:2	0/1:0,11:29:11:1.00:2	0/1:17,5:30:22:0.227:2	0/1:2,7:29:9:0.778:2
chr1	159904539	rs35702833	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,4:31:12:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	159921624	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:32:8:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	159923111	rs2789417	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,155:33:155:1.00:2	0/1:0,80:32:80:1.00:2	0/1:7,13:32:20:0.650:2	0/1:1,141:33:142:0.993:2	0/1:0,108:32:108:1.00:2	0/1:0,140:32:140:1.00:2	0/1:0,129:33:129:1.00:2	0/1:1,172:33:173:0.994:2	0/1:0,161:34:161:1.00:2	0/1:0,119:33:119:1.00:2	0/1:0,153:33:153:1.00:2
chr1	159923885	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:31:100:0.040:2	./.	./.	./.
chr1	159923904	rs145274502	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:33:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	160000435	rs12409352	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,90:30:93:0.968:2	./.	./.	./.	0/1:4,136:30:140:0.971:2	0/1:75,40:31:115:0.348:2	./.	./.
chr1	160000927	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:163,4:33:167:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr1	160011512	rs1130183	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,79:31:154:0.513:2	./.	./.	./.	./.	./.	./.	./.
chr1	160057361	rs116253846	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,8:31:17:0.471:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	160057522	rs3001040	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,6:29:6:1.00:2	./.	0/1:0,3:31:3:1.00:2	./.	0/1:4,4:33:8:0.500:2	./.	0/1:1,10:29:11:0.909:2
chr1	160062340	rs41265757	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,18:30:30:0.600:2	./.	./.	./.	./.	./.	./.	./.
chr1	160062472	rs2295622	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:6,5:32:11:0.455:2	0/1:2,3:31:5:0.600:2	./.	0/1:2,10:30:12:0.833:2	./.	./.	./.	./.	./.	./.	./.
chr1	160062727	rs2295621	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:41,13:28:54:0.241:2	0/1:23,16:28:39:0.410:2	./.	0/1:14,25:27:39:0.641:2	./.	./.	./.	./.	./.	./.	./.
chr1	160064810	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:32:47:0.085:2	./.	./.	./.	./.	./.
chr1	160093165	rs116711766	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,49:32:101:0.485:2	./.	./.	./.	./.	./.
chr1	160098456	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:34:70:0.057:2	./.	./.	./.	./.
chr1	160098543	rs1063125	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,51:32:108:0.472:2	./.	0/1:41,67:33:108:0.620:2	0/1:62,55:33:117:0.470:2	./.
chr1	160105381	rs147183887	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,65:27:134:0.485:2
chr1	160106787	rs201048446	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,9:15:55:0.164:2	0/1:91,13:14:104:0.125:2	0/1:57,13:15:70:0.186:2	0/1:90,18:12:108:0.167:2	0/1:79,16:14:95:0.168:2	0/1:50,9:14:59:0.153:2	./.	0/1:34,9:14:43:0.209:2
chr1	160121899	rs77332724	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,8:32:15:0.533:2	./.	./.
chr1	160124875	rs6427504	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:28,23:32:51:0.451:2	0/1:5,12:32:17:0.706:2	0/1:0,3:32:3:1.00:2	./.	./.	0/1:19,25:31:44:0.568:2	0/1:1,24:31:25:0.960:2	0/1:0,52:31:52:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,32:31:32:1.00:2	./.
chr1	160134056	rs17368402	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,83:32:187:0.444:2	0/1:101,88:32:189:0.466:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	160134205	rs11265338	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:35,21:31:56:0.375:2	0/1:3,171:29:174:0.983:2	0/1:2,174:30:176:0.989:2	0/1:0,149:30:149:1.00:2	0/1:84,69:30:153:0.451:2	0/1:79,73:30:152:0.480:2	./.	0/1:76,107:30:183:0.585:2	0/1:1,173:30:174:0.994:2
chr1	160136350	rs7529215	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,112:32:112:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,16:32:16:1.00:2	0/1:68,97:31:165:0.588:2	./.	./.	0/1:0,118:32:118:1.00:2	0/1:67,107:31:174:0.615:2	0/1:0,133:32:133:1.00:2	0/1:1,128:32:129:0.992:2	./.
chr1	160141196	rs625549	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,114:32:114:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,118:31:118:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,106:31:106:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,132:31:132:1.00:2	0/1:0,120:32:120:1.00:2	0/1:0,107:32:107:1.00:2	0/1:0,143:32:143:1.00:2
chr1	160151577	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:125,4:32:129:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr1	160178376	rs3789040	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,9:32:14:0.643:2	0/1:0,7:32:7:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	160267451	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:33:134:0.030:2	./.	./.	./.
chr1	160303416	rs1802778	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:11,15:33:26:0.577:2	0/1:5,3:31:8:0.375:2	./.	0/1:21,13:31:34:0.382:2	./.	./.	./.	0/1:28,23:32:51:0.451:2	0/1:15,22:32:37:0.595:2	0/1:0,35:31:35:1.00:2	./.
chr1	160303443	rs188665868	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,22:33:38:0.579:2	./.	./.	./.	./.	./.	./.
chr1	160321065	rs12239747	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,84:32:174:0.483:2	./.	./.	./.
chr1	160321499	rs6664627	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,81:32:185:0.438:2	./.	./.	./.
chr1	160340900	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,4:31:61:0.066:2	./.	./.	./.	./.	./.	./.
chr1	160341110	rs114483127	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,12:31:31:0.387:2	./.	./.	./.	./.
chr1	160341142	rs10908778	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,31:31:66:0.470:2	./.	./.
chr1	160341876	rs2147472	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:65,43:31:108:0.398:2	0/1:34,21:30:55:0.382:2	./.	0/1:86,58:30:144:0.403:2	./.	./.	./.	0/1:99,44:30:143:0.308:2	./.	0/1:2,94:31:96:0.979:2	./.
chr1	160341962	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:33:120:0.033:2
chr1	160342015	rs7521304	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,57:30:57:1.00:2	0/1:1,34:30:35:0.971:2	./.	0/1:30,41:30:71:0.577:2	./.	./.	./.	0/1:40,39:30:79:0.494:2	0/1:46,28:31:74:0.378:2	0/1:0,34:30:34:1.00:2	./.
chr1	160342162	rs10637656	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.
chr1	160393905	rs12086448	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,122:31:122:1.00:2	0/1:0,45:32:45:1.00:2	0/1:13,10:30:23:0.435:2	0/1:78,89:31:167:0.533:2	./.	./.	0/1:81,84:31:165:0.509:2	0/1:93,87:32:180:0.483:2	./.	0/1:0,139:31:139:1.00:2	./.
chr1	160394937	rs17380127	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,38:32:96:0.400:2	0/1:38,16:32:54:0.296:2	0/1:6,3:33:9:0.333:2	0/1:52,63:32:115:0.548:2	./.	./.	./.	./.	./.	0/1:1,83:32:84:0.988:2	./.
chr1	160395003	rs17380141	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,40:32:80:0.500:2	0/1:24,21:33:45:0.467:2	0/1:6,4:32:10:0.400:2	0/1:52,47:32:99:0.475:2	./.	./.	./.	./.	./.	0/1:1,78:32:79:0.987:2	./.
chr1	160460969	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:30:104:0.038:2
chr1	160461060	rs16832061	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,40:32:113:0.354:2	./.	./.	./.	./.
chr1	160493005	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:32:143:0.028:2	./.	./.	./.	./.	./.
chr1	160518115	rs111536196	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,31:31:76:0.408:2	./.	./.
chr1	160535471	rs35600010	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,25:33:60:0.417:2	./.
chr1	160580549	rs3796504	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,15:31:29:0.517:2	./.	./.	./.	./.	./.	./.	0/1:103,89:31:192:0.464:2	./.
chr1	160604473	rs164288	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,12:32:15:0.800:2	./.	./.	./.	0/1:93,99:32:192:0.516:2	./.	./.	0/1:84,51:33:135:0.378:2	./.
chr1	160616703	rs2295612	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,65:30:120:0.542:2	0/1:81,53:30:134:0.396:2	./.	0/1:105,49:31:154:0.318:2	./.	0/1:59,80:31:139:0.576:2
chr1	160654758	rs2295615	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,19:32:34:0.559:2	./.	./.	./.	./.	./.	0/1:101,68:34:170:0.402:2	0/1:102,73:33:175:0.417:2	./.
chr1	160654786	rs1980606	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,14:31:28:0.500:2	./.	./.	./.	./.	./.	0/1:75,56:31:132:0.427:2	0/1:72,55:31:127:0.433:2	0/1:105,69:31:175:0.397:2
chr1	160709100	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,19:13:119:0.160:2	./.	0/1:120,18:11:138:0.130:2	./.	./.	./.
chr1	160793442	rs474131	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,79:31:174:0.454:2	./.	./.	0/1:92,84:31:176:0.477:2	./.	0/1:91,81:32:172:0.471:2	./.	./.
chr1	160793560	rs509749	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,64:29:114:0.561:2	./.	./.	0/1:67,43:31:110:0.391:2	./.	0/1:47,45:31:92:0.489:2	./.	./.
chr1	160793962	rs506081	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,40:33:93:0.430:2	./.	./.	0/1:65,37:32:103:0.363:2	./.	0/1:67,29:33:96:0.302:2	./.	./.
chr1	160793995	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:32:121:0.033:2	./.	./.
chr1	160808230	rs375871180	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:30:108:0.037:2	./.	./.	./.
chr1	160851826	rs2274907	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,160:31:161:0.994:2	0/1:0,83:31:83:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,175:31:175:1.00:2	0/1:1,150:31:151:0.993:2	0/1:77,94:31:171:0.550:2	0/1:0,170:31:170:1.00:2	0/1:90,85:31:175:0.486:2	0/1:80,84:32:164:0.512:2	0/1:83,75:31:158:0.475:2	0/1:0,127:32:128:1.00:2
chr1	160851894	rs2274908	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,108:31:109:0.991:2	0/1:0,58:31:58:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,127:31:127:1.00:2	0/1:1,123:31:124:0.992:2	0/1:69,82:30:151:0.543:2	0/1:1,147:31:148:0.993:2	0/1:81,63:31:144:0.438:2	0/1:68,77:32:145:0.531:2	0/1:61,57:31:118:0.483:2	0/1:0,70:31:70:1.00:2
chr1	160920372	rs12094026	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:30:13:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	160920431	rs12090411	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,5:32:17:0.294:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	160920441	rs79889663	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:41,36:32:77:0.468:2	0/1:25,31:32:56:0.554:2	./.	./.	./.	./.	./.	0/1:113,61:31:174:0.351:2	./.	./.	./.
chr1	160920902	rs61469377	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,17:32:31:0.548:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	160920966	rs6680969	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,48:31:105:0.457:2	0/1:30,28:32:58:0.483:2	0/1:7,14:31:21:0.667:2	0/1:3,132:31:136:0.978:2	0/1:68,93:31:161:0.578:2	0/1:54,56:30:110:0.509:2	0/1:3,159:31:162:0.981:2	0/1:96,82:31:179:0.461:2	0/1:71,61:32:132:0.462:2	0/1:130,4:33:134:0.030:2	0/1:0,120:32:120:1.00:2
chr1	160971146	rs790055	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,9:32:23:0.391:2	0/1:8,4:35:12:0.333:2	0/1:5,4:32:9:0.444:2	0/1:32,23:33:55:0.418:2	0/1:0,39:32:39:1.00:2	0/1:1,26:32:27:0.963:2	0/1:18,13:33:31:0.419:2	0/1:0,56:32:56:1.00:2	0/1:39,20:33:59:0.339:2	0/1:0,33:33:33:1.00:2	0/1:36,23:33:59:0.390:2
chr1	160971155	rs2297219	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,9:32:22:0.409:2	./.	./.	0/1:29,18:33:47:0.383:2	0/1:20,16:32:36:0.444:2	0/1:8,16:32:24:0.667:2	0/1:13,9:33:22:0.409:2	./.	0/1:35,20:33:55:0.364:2	./.	0/1:37,20:33:57:0.351:2
chr1	160990875	rs28365980	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,4:29:27:0.148:2	0/1:19,20:31:39:0.513:2	./.	0/1:1,35:31:36:0.972:2	./.	0/1:0,19:32:19:1.00:2	./.
chr1	160990876	rs28365979	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,4:29:27:0.148:2	0/1:20,20:29:40:0.500:2	./.	0/1:1,35:29:36:0.972:2	./.	0/1:0,19:29:19:1.00:2	./.
chr1	160990878	rs28365978	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,4:26:28:0.143:2	0/1:19,20:29:39:0.513:2	./.	0/1:1,35:31:36:0.972:2	./.	0/1:0,20:32:20:1.00:2	./.
chr1	161012432	rs199606185	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,50:29:103:0.485:2	./.	./.	./.	./.	./.	./.	./.
chr1	161016801	rs17215366	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,43:29:91:0.473:2	./.	0/1:46,40:30:86:0.465:2	./.
chr1	161016890	rs17215373	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,18:31:59:0.305:2
chr1	161017556	rs2774279	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,21:30:57:0.368:2	0/1:23,30:31:53:0.566:2	./.	0/1:59,29:31:88:0.330:2	./.	0/1:36,32:32:68:0.471:2	./.
chr1	161017761	rs112388093	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,66:31:139:0.475:2	./.	0/1:30,45:31:75:0.600:2	./.
chr1	161019040	rs3813609	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,19:29:48:0.396:2	0/1:8,10:28:18:0.556:2	./.	0/1:49,32:30:81:0.395:2	0/1:1,57:28:58:0.983:2	0/1:0,61:28:61:1.00:2	0/1:38,31:28:71:0.449:2	0/1:68,40:28:108:0.370:2	0/1:39,34:30:73:0.466:2	0/1:42,31:29:73:0.425:2	0/1:31,40:29:71:0.563:2
chr1	161024211	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:168,4:31:172:0.023:2	./.	./.	./.	./.	./.	./.
chr1	161044490	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,6:31:125:0.048:2	./.
chr1	161049383	rs77444104	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:29:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	161068836	rs11576830	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:26:3:1.00:2	./.	./.	./.	./.	./.
chr1	161088583	rs41270017	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,22:29:40:0.550:2	./.	0/1:15,29:28:44:0.659:2
chr1	161089064	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:32:117:0.034:2
chr1	161094190	rs1135783	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,78:29:154:0.506:2	./.	0/1:74,73:28:147:0.497:2
chr1	161128259	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:31:120:0.033:2	./.	./.	./.	./.
chr1	161130700	rs137880709	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,6:33:83:0.072:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	161130701	rs34779722	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,55:31:96:0.573:2	./.	./.	./.	./.	./.
chr1	161132777	rs17356051	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	./.	./.	0/1:39,21:30:60:0.350:2	./.
chr1	161132821	rs1127525	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,39:27:93:0.419:2	./.	./.	./.
chr1	161139738	rs36013429	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,67:33:137:0.489:2	./.	0/1:71,47:32:118:0.398:2
chr1	161143801	rs3813619	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,18:33:45:0.400:2	./.	0/1:28,20:31:48:0.417:2
chr1	161145005	rs3813620	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,14:33:33:0.424:2	./.	0/1:13,23:33:36:0.639:2
chr1	161161284	rs41270041	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,29:29:68:0.426:2	./.	0/1:28,44:28:72:0.611:2
chr1	161163037	rs4233367	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,28:31:29:0.966:2	0/1:0,16:31:16:1.00:2	0/1:0,3:33:3:1.00:2	0/1:23,15:30:38:0.395:2	./.	0/1:0,36:31:36:1.00:2	./.	0/1:26,21:29:47:0.447:2	0/1:17,27:31:44:0.614:2	0/1:24,6:31:30:0.200:2	0/1:18,20:29:38:0.526:2
chr1	161168004	rs33941127	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:28,17:32:45:0.378:2	0/1:18,15:32:33:0.455:2	0/1:2,3:33:5:0.600:2	./.	./.	./.	./.	./.	0/1:62,4:32:66:0.061:2	0/1:26,25:33:51:0.490:2	./.
chr1	161168189	rs34448954	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,18:25:37:0.486:2	0/1:12,4:31:16:0.250:2	./.	./.	./.	0/1:19,19:28:39:0.500:2	./.	./.	./.	./.	./.
chr1	161172233	rs11538340	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,19:30:28:0.679:2	./.	0/1:12,8:28:21:0.400:2
chr1	161180119	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,4:31:99:0.040:2	./.	./.	./.	./.	./.	./.
chr1	161182208	rs11576415	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,12:30:29:0.414:2	0/1:14,16:32:30:0.533:2	./.	./.	./.	0/1:34,25:32:59:0.424:2	./.	./.	./.	./.	./.
chr1	161183449	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,4:31:70:0.057:2	./.	./.	./.	./.	./.	./.	./.
chr1	161183516	rs1136207	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,31:32:68:0.456:2	./.	0/1:29,36:32:65:0.554:2	./.	./.	./.	./.	./.
chr1	161185157	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:34:145:0.028:2	./.	./.
chr1	161202605	rs2307424	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,29:33:62:0.468:2	0/1:14,11:32:25:0.440:2	0/1:3,4:33:7:0.571:2	0/1:34,36:33:70:0.514:2	./.	0/1:0,73:32:73:1.00:2	./.	./.	0/1:45,37:33:82:0.451:2	0/1:27,24:32:51:0.471:2	./.
chr1	161203003	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,19:10:114:0.167:2	./.	./.	./.	./.
chr1	161254246	rs41270859	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,95:33:166:0.572:2	./.	0/1:102,73:33:175:0.417:2	./.
chr1	161275729	rs34307129	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,60:30:111:0.541:2	./.
chr1	161276207	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:29:99:0.040:2	./.	./.	./.	./.
chr1	161332124	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,7:32:166:0.042:2	./.	./.	./.
chr1	161332125	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,5:31:153:0.033:2	./.	./.	./.	./.	./.
chr1	161332174	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:33:178:0.022:2	./.	./.	./.	./.
chr1	161336240	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:32:176:0.023:2	./.	./.	./.	./.	./.
chr1	161337604	rs41270861	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,32:31:71:0.451:2	./.	./.	./.	./.	./.
chr1	161475750	rs10494360	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,103:32:199:0.518:2	./.	./.	./.	0/1:125,67:32:192:0.349:2
chr1	161476160	rs201954965	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:32:191:0.021:2	./.	./.	./.	./.
chr1	161476204	rs9427397	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,80:32:181:0.442:2	./.	./.	./.	0/1:108,82:32:190:0.432:2
chr1	161476205	rs9427398	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,80:32:187:0.428:2	./.	./.	./.	0/1:105,84:32:189:0.444:2
chr1	161476326	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:180,16:30:196:0.082:2	./.	./.	./.	0/1:181,14:33:195:0.072:2	./.	./.
chr1	161476343	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,10:30:178:0.056:2	0/1:126,6:32:132:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	161479611	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:159,4:31:163:0.025:2	0/1:112,7:31:119:0.059:2	./.	./.	./.	./.	./.	./.
chr1	161479663	rs4986941	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:189,7:25:196:0.036:2	./.	./.	./.	./.	./.	./.
chr1	161479745	rs1801274	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,183:29:188:0.973:2	0/1:2,167:28:169:0.988:2	0/1:15,11:28:26:0.423:2	0/1:99,95:29:194:0.490:2	0/1:101,96:29:197:0.487:2	0/1:1,178:29:179:0.994:2	0/1:84,104:28:188:0.553:2	0/1:104,90:28:194:0.464:2	0/1:0,188:29:188:1.00:2	0/1:110,87:29:197:0.442:2	0/1:107,88:28:195:0.451:2
chr1	161479748	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:32:193:0.026:2	0/1:191,7:32:198:0.035:2	./.	./.	./.	./.
chr1	161479757	.	C	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	0/1:188,6:31:194:0.031:2	0/1:190,7:31:197:0.036:2	./.	./.	0/1:191,6:27:197:0.030:2	./.
chr1	161479832	rs141094947	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:179,7:30:186:0.038:2	./.	0/1:188,5:29:193:0.026:2	./.	./.	./.	./.	./.	0/1:179,5:31:185:0.027:2	./.
chr1	161480649	rs11810143	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,76:30:148:0.514:2	./.	./.	./.	0/1:68,89:30:157:0.567:2
chr1	161480691	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,6:29:190:0.032:2	0/1:161,4:33:165:0.024:2	./.	0/1:158,6:32:164:0.037:2	0/1:171,7:29:178:0.039:2	./.	./.	0/1:176,6:27:182:0.033:2
chr1	161483656	rs56157533	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,49:32:197:0.249:2	./.	./.	./.	0/1:150,43:31:193:0.223:2
chr1	161483723	rs409763	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:136,11:32:147:0.075:2	0/1:123,20:31:143:0.140:2	./.	./.	0/1:164,8:29:172:0.047:2	0/1:183,10:31:193:0.052:2	./.	0/1:185,9:30:194:0.046:2	0/1:172,9:32:181:0.050:2	./.	./.
chr1	161483750	rs395463	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,26:31:159:0.164:2	./.	./.	./.	0/1:156,33:31:189:0.175:2
chr1	161487805	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:150,39:33:189:0.206:2	0/1:129,15:32:144:0.104:2	0/1:29,7:34:36:0.194:2	0/1:162,18:31:180:0.100:2	0/1:127,15:32:142:0.106:2	./.	0/1:146,22:32:168:0.131:2	0/1:178,20:33:198:0.101:2	./.	0/1:152,8:31:160:0.050:2	0/1:153,42:33:196:0.215:2
chr1	161487863	rs143182858	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,167:31:186:0.898:2	0/1:124,69:31:193:0.358:2	./.	./.	./.	./.	0/1:108,67:31:175:0.383:2	./.
chr1	161494595	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,3:32:35:0.086:2	0/1:29,7:30:36:0.194:2	./.	./.	./.	0/1:22,3:30:25:0.120:2	./.	./.	./.	./.	./.
chr1	161495040	rs63749092	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,134:29:139:0.971:2	0/1:88,72:28:160:0.450:2	./.	./.	./.	./.	0/1:86,50:30:136:0.368:2	./.
chr1	161495153	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,15:31:177:0.085:2	./.	./.	./.	./.	./.
chr1	161495477	rs72633678	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:132,61:31:193:0.316:2	0/1:72,40:31:112:0.357:2	./.	0/1:0,156:31:157:1.00:2	0/1:1,180:31:181:0.994:2	0/1:93,78:31:171:0.456:2	0/1:89,91:32:180:0.506:2	./.	0/1:2,155:32:157:0.987:2	0/1:60,55:32:115:0.478:2	0/1:0,118:32:119:1.00:2
chr1	161495571	rs140052915	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,31:31:149:0.208:2	0/1:96,47:31:143:0.329:2	./.	./.	./.	0/1:89,51:31:140:0.364:2	0/1:85,25:32:110:0.227:2	./.
chr1	161495885	rs404508	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:130,60:32:190:0.316:2	0/1:82,42:31:124:0.339:2	0/1:6,7:32:13:0.538:2	0/1:0,150:32:150:1.00:2	0/1:1,182:31:183:0.995:2	0/1:0,190:32:190:1.00:2	0/1:107,86:32:194:0.446:2	0/1:107,89:32:196:0.454:2	0/1:0,187:33:187:1.00:2	0/1:0,149:32:150:1.00:2	0/1:0,169:32:169:1.00:2
chr1	161496031	rs570167	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,3:33:49:0.061:2	./.	./.	0/1:187,8:32:196:0.041:2	0/1:186,7:33:193:0.036:2	./.	./.	./.	./.
chr1	161496042	rs3820450	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,10:29:193:0.052:2	0/1:176,10:30:186:0.054:2	./.	./.	./.	./.
chr1	161496134	rs753856	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,95:32:103:0.922:2	0/1:74,41:32:115:0.357:2	./.	./.	./.	./.	0/1:73,37:33:110:0.336:2	./.
chr1	161496178	rs368844	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,81:32:86:0.953:2	0/1:86,33:31:119:0.277:2	./.	./.	./.	./.	0/1:70,35:32:105:0.333:2	./.
chr1	161496530	rs1042881	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:140,36:32:176:0.205:2	0/1:103,36:31:139:0.259:2	./.	./.	0/1:55,32:31:88:0.368:2	0/1:68,56:32:124:0.452:2	./.	./.	0/1:2,124:32:126:0.984:2	./.	0/1:104,81:32:185:0.438:2
chr1	161514542	rs396991	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,5:32:12:0.417:2	0/1:3,101:32:104:0.971:2	0/1:32,36:31:68:0.529:2	0/1:43,56:32:99:0.566:2	0/1:39,34:33:73:0.466:2	0/1:52,55:32:107:0.514:2	./.	0/1:1,102:32:103:0.990:2	0/1:73,67:32:140:0.479:2
chr1	161514659	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,5:29:159:0.031:2	./.
chr1	161518214	rs148181339	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:139,58:33:197:0.294:2	0/1:134,62:31:196:0.316:2	./.	./.	./.	./.	0/1:142,55:32:197:0.279:2	0/1:178,22:32:200:0.110:2	./.	./.	0/1:121,74:33:195:0.379:2
chr1	161518233	rs139622799	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,24:32:54:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	161518286	rs200727785	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:66,4:28:70:0.057:2	0/1:170,25:31:196:0.128:2	0/1:173,25:30:198:0.126:2	0/1:175,21:31:196:0.107:2	0/1:177,17:30:195:0.088:2	0/1:194,5:29:199:0.025:2	0/1:158,34:32:192:0.177:2	0/1:165,18:30:183:0.098:2	./.
chr1	161518297	rs52820103	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,13:31:194:0.067:2	./.	./.	./.	./.	./.
chr1	161518314	rs114535887	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:149,39:32:188:0.207:2	0/1:147,46:32:193:0.238:2	./.	./.	./.	./.	0/1:139,60:31:199:0.302:2	0/1:119,76:32:195:0.390:2	./.	./.	./.
chr1	161518333	rs10127939	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,59:31:198:0.298:2	./.	./.	./.	0/1:126,58:31:184:0.315:2
chr1	161518336	rs77144485	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:130,54:29:184:0.293:2	0/1:133,60:31:195:0.311:2	./.	./.	./.	0/1:163,29:30:192:0.151:2	0/1:166,30:31:196:0.153:2	0/1:175,18:27:194:0.093:2	./.	./.	0/1:115,66:31:183:0.365:2
chr1	161518416	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:148,8:31:156:0.051:2	./.	./.	./.	0/1:161,8:31:169:0.047:2	./.	./.
chr1	161518422	rs200475280	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,5:34:165:0.030:2	./.	./.
chr1	161551245	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,43:32:196:0.219:2	./.	./.	./.	0/1:148,42:32:190:0.221:2
chr1	161558265	rs144725145	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:113,75:32:188:0.399:2	0/1:106,62:32:168:0.369:2	./.	./.	./.	./.	0/1:146,43:32:189:0.228:2	0/1:125,67:31:192:0.349:2	./.	./.	0/1:107,68:32:175:0.389:2
chr1	161559554	rs34498508	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:166,29:32:195:0.149:2	./.	./.	./.	0/1:178,15:32:193:0.078:2	./.	./.
chr1	161559571	rs138747765	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:64,117:31:182:0.646:2	0/1:72,112:31:184:0.609:2	./.	./.	./.	./.	0/1:87,99:31:186:0.532:2	0/1:75,94:31:169:0.556:2	./.	./.	0/1:49,102:30:151:0.675:2
chr1	161560943	rs370748254	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:130,13:15:143:0.091:2	./.	./.	0/1:71,18:10:90:0.202:2	0/1:112,24:11:137:0.176:2	0/1:135,34:10:169:0.201:2	./.	./.	./.	./.	0/1:87,17:14:104:0.163:2
chr1	161561154	rs201842559	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:155,27:28:182:0.148:2	./.	./.	./.	./.	./.	0/1:157,17:28:174:0.098:2	./.
chr1	161561967	rs200642147	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,45:32:174:0.259:2	./.	./.	0/1:112,81:33:193:0.420:2	./.	./.	./.	./.	./.
chr1	161565314	rs79316700	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,15:32:53:0.283:2	./.	./.	./.	0/1:54,21:31:75:0.280:2
chr1	161565324	rs61801822	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,181:32:181:1.00:2	0/1:0,94:32:94:1.00:2	0/1:14,5:32:19:0.263:2	./.	0/1:66,48:32:115:0.421:2	0/1:99,95:32:194:0.490:2	0/1:3,47:32:50:0.940:2	0/1:0,43:32:43:1.00:2	0/1:1,83:33:84:0.988:2	./.	0/1:0,82:32:82:1.00:2
chr1	161565381	rs76277413	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,52:32:149:0.349:2	./.	./.	0/1:124,5:31:129:0.039:2	0/1:121,68:31:189:0.360:2
chr1	161565408	rs114010589	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,5:29:153:0.033:2	./.	./.	0/1:103,5:32:108:0.046:2	./.
chr1	161569419	rs430178	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,28:33:28:1.00:2	0/1:52,19:31:71:0.268:2	./.	0/1:1,53:32:54:0.981:2	0/1:0,45:33:45:1.00:2	./.	0/1:0,35:33:35:1.00:2	0/1:0,59:32:59:1.00:2
chr1	161569518	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,27:31:131:0.206:2	0/1:190,5:31:195:0.026:2	./.	./.	./.	./.	0/1:97,8:29:105:0.076:2	./.
chr1	161569533	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:33:93:0.043:2	./.
chr1	161569569	rs138731942	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,16:30:35:0.457:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	161596014	rs71632957	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:124,8:33:132:0.061:2	0/1:178,8:32:186:0.043:2	0/1:189,6:32:195:0.031:2	./.	0/1:116,5:33:121:0.041:2	./.	0/1:126,5:31:131:0.038:2	./.
chr1	161596032	rs114169903	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,47:30:190:0.247:2	./.	./.	./.	./.	./.
chr1	161599571	rs199890941	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:51,67:31:118:0.568:2	0/1:21,39:31:60:0.650:2	./.	./.	./.	./.	0/1:138,26:32:164:0.159:2	0/1:62,131:32:193:0.679:2	./.	./.	0/1:40,93:32:133:0.699:2
chr1	161599590	rs368410676	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,5:33:21:0.238:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	161599643	rs147574249	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:1,74:31:75:0.987:2	0/1:0,42:31:42:1.00:2	0/1:16,4:31:20:0.200:2	./.	./.	0/1:162,26:30:188:0.138:2	0/1:164,27:32:191:0.141:2	./.	./.	./.	0/1:3,70:29:74:0.959:2
chr1	161599654	rs5030738	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,70:30:193:0.363:2	./.	./.	./.	./.	./.
chr1	161599693	rs76714703	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,23:31:23:1.00:2	0/1:0,136:32:137:1.00:2	0/1:0,187:32:187:1.00:2	0/1:39,144:32:184:0.787:2	0/1:75,104:33:179:0.581:2	./.	0/1:0,177:33:177:1.00:2	0/1:0,109:32:109:1.00:2	./.
chr1	161599773	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:1,3:33:4:0.750:2	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	0/1:0,15:32:15:1.00:2	./.	./.	0/1:3,4:34:7:0.571:2
chr1	161599779	rs200688856	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:33:6:1.00:2	./.	./.	./.
chr1	161633049	rs148087564	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,38:32:198:0.192:2	./.	./.	./.	0/1:158,35:31:193:0.181:2
chr1	161640095	rs138321848	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:105,79:32:185:0.429:2	0/1:104,65:32:169:0.385:2	./.	./.	./.	./.	0/1:152,32:31:184:0.174:2	0/1:129,55:31:184:0.299:2	./.	./.	0/1:101,82:31:183:0.448:2
chr1	161641210	rs181249089	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:184,5:31:189:0.026:2	./.	./.	./.	./.	./.	./.
chr1	161641218	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:188,5:30:193:0.026:2	./.	./.	./.	./.	./.	./.
chr1	161641384	rs6665610	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,114:30:190:0.600:2	./.	./.	./.	0/1:45,142:32:187:0.759:2	./.	./.
chr1	161641401	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:154,22:32:176:0.125:2	0/1:139,21:32:160:0.131:2	./.	./.	./.	./.	0/1:181,12:32:193:0.062:2	0/1:174,18:30:192:0.094:2	./.	./.	0/1:173,15:29:188:0.080:2
chr1	161642766	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:151,10:29:161:0.062:2	./.	0/1:162,6:31:168:0.036:2	./.	./.	./.	./.	./.
chr1	161642774	rs200112434	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,8:11:18:0.444:2	./.	./.	0/1:140,32:11:173:0.186:2	0/1:134,32:10:166:0.193:2	0/1:132,39:11:171:0.228:2	./.	0/1:123,13:17:136:0.096:2	0/1:99,21:17:120:0.175:2
chr1	161642818	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:159,9:32:168:0.054:2	./.	0/1:152,7:28:159:0.044:2	./.	./.	./.	./.	./.
chr1	161642985	rs182968886	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,166:30:184:0.902:2	./.	./.	./.	./.	./.	0/1:104,78:30:182:0.429:2	./.
chr1	161643798	rs1050501	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:154,32:32:187:0.172:2	./.	./.	0/1:122,71:32:193:0.368:2	./.	./.	./.	./.	./.
chr1	161645058	rs148534844	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,33:33:187:0.177:2	0/1:81,23:32:104:0.221:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	161680258	rs6427618	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:94,76:32:170:0.447:2	0/1:49,48:32:97:0.495:2	0/1:0,23:32:23:1.00:2	0/1:87,105:31:192:0.547:2	0/1:111,76:31:187:0.406:2	0/1:106,81:31:187:0.433:2	0/1:115,76:31:192:0.398:2	0/1:113,80:32:193:0.415:2	0/1:0,182:33:182:1.00:2	0/1:1,181:32:182:0.995:2	0/1:89,66:31:155:0.426:2
chr1	161681780	rs2275603	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:45,38:32:83:0.458:2	0/1:14,16:31:30:0.533:2	./.	0/1:29,24:30:53:0.453:2	./.	0/1:31,20:31:51:0.392:2	0/1:39,19:32:58:0.328:2	./.	./.	./.	0/1:33,40:32:73:0.548:2
chr1	161682975	rs6688140	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,18:30:36:0.500:2	./.	./.	./.	./.
chr1	161683136	rs11746	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,21:33:52:0.404:2	0/1:12,16:32:28:0.571:2	0/1:3,3:34:6:0.500:2	0/1:74,37:33:111:0.333:2	./.	0/1:42,31:32:73:0.425:2	./.	0/1:0,65:33:65:1.00:2	0/1:1,65:34:66:0.985:2	0/1:0,40:33:40:1.00:2	./.
chr1	161695639	rs7520519	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,150:31:151:0.993:2	0/1:0,95:32:95:1.00:2	0/1:0,28:32:28:1.00:2	0/1:2,170:31:172:0.988:2	0/1:84,80:32:164:0.488:2	0/1:2,177:31:179:0.989:2	0/1:0,163:32:163:1.00:2	0/1:0,167:31:167:1.00:2	0/1:0,182:32:182:1.00:2	0/1:0,158:32:158:1.00:2	0/1:96,80:30:176:0.455:2
chr1	161696782	rs11585450	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,4:25:5:0.800:2	0/1:4,5:30:9:0.556:2	./.	0/1:7,3:30:10:0.300:2	./.	0/1:3,3:29:6:0.500:2	0/1:2,3:23:5:0.600:2	0/1:1,6:28:7:0.857:2	./.	0/1:0,13:29:13:1.00:2	./.
chr1	161697072	rs72704099	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,20:33:51:0.392:2	./.	0/1:46,24:32:70:0.343:2	./.	./.	./.	./.	./.
chr1	161697149	rs16858529	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,11:31:31:0.355:2	./.	./.	./.	./.	./.
chr1	161697319	rs34868416	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,8:31:14:0.571:2	./.	./.	./.	./.	./.	./.
chr1	161721707	rs1063178	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:122,70:32:192:0.365:2	0/1:62,64:32:126:0.508:2	./.	0/1:0,158:32:158:1.00:2	./.	0/1:99,79:31:178:0.444:2	./.	./.	0/1:104,94:33:198:0.475:2	0/1:97,93:32:190:0.489:2	./.
chr1	161722204	rs1063179	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,80:33:188:0.426:2
chr1	161722972	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.	./.	./.	./.
chr1	161736197	rs112863172	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,34:30:56:0.607:2	./.
chr1	161751741	rs1058405	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:8,14:31:22:0.636:2	0/1:16,11:32:27:0.407:2	./.	0/1:0,40:32:40:1.00:2	./.	./.	./.	./.	./.	0/1:18,20:33:38:0.526:2	0/1:32,19:32:51:0.373:2
chr1	161928327	rs9482	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,61:30:63:0.968:2	0/1:0,63:30:63:1.00:2	0/1:0,13:30:14:1.00:2	0/1:0,105:30:105:1.00:2	0/1:1,97:30:98:0.990:2	0/1:70,64:30:134:0.478:2	0/1:0,70:29:71:1.00:2	0/1:1,92:29:94:0.989:2	0/1:0,104:30:104:1.00:2	0/1:0,79:29:79:1.00:2	0/1:1,107:30:108:0.991:2
chr1	161967681	rs2499836	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,50:29:106:0.472:2	0/1:34,32:29:66:0.485:2	0/1:0,13:29:13:1.00:2	0/1:2,115:30:117:0.983:2	0/1:91,62:28:155:0.405:2	0/1:71,79:30:151:0.527:2	0/1:1,132:29:133:0.992:2	0/1:83,76:28:159:0.478:2	0/1:72,64:29:136:0.471:2	0/1:85,49:29:134:0.366:2	0/1:0,120:28:120:1.00:2
chr1	161976234	rs12022536	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,43:30:43:1.00:2	0/1:0,41:30:41:1.00:2	./.	0/1:0,80:30:81:1.00:2	0/1:36,28:30:64:0.438:2	0/1:0,72:30:72:1.00:2	0/1:0,62:30:62:1.00:2	0/1:3,58:30:61:0.951:2	0/1:48,38:30:86:0.442:2	0/1:0,61:30:61:1.00:2	0/1:0,87:30:87:1.00:2
chr1	161993192	rs12130792	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,46:32:111:0.414:2	./.	./.	./.	./.
chr1	162302875	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:126,4:31:130:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr1	162313735	rs3751284	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,76:31:197:0.388:2	./.	./.	0/1:95,99:31:194:0.510:2	0/1:102,89:31:192:0.466:2
chr1	162335256	rs348624	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:35,28:30:63:0.444:2	0/1:29,17:31:46:0.370:2	./.	./.	./.	./.	0/1:50,78:31:128:0.609:2	./.	0/1:51,36:31:87:0.414:2	./.	./.
chr1	162343861	rs142892903	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,47:32:104:0.452:2	./.	./.	./.	./.
chr1	162344069	rs13823	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,51:32:100:0.510:2	./.	./.
chr1	162344102	rs2282397	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,42:31:103:0.408:2	./.	./.	0/1:60,68:31:128:0.531:2	0/1:1,147:31:149:0.993:2	./.	0/1:31,42:31:73:0.575:2	0/1:40,71:31:111:0.640:2
chr1	162344390	rs164159	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:30:37:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,70:31:70:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,54:30:54:1.00:2
chr1	162345091	rs164181	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,124:32:124:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,140:31:140:1.00:2	0/1:0,152:31:152:1.00:2	0/1:0,163:31:163:1.00:2	0/1:0,143:32:143:1.00:2	0/1:0,170:31:170:1.00:2	0/1:0,135:32:135:1.00:2	0/1:0,121:32:121:1.00:2	0/1:2,156:31:158:0.987:2
chr1	162353130	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.	./.	./.
chr1	162367071	rs17852003	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,33:30:68:0.485:2	0/1:23,10:32:33:0.303:2	./.	./.	./.	0/1:50,56:30:106:0.528:2	0/1:47,45:31:92:0.489:2	0/1:52,61:30:113:0.540:2	./.	0/1:42,21:31:63:0.333:2	0/1:31,38:30:69:0.551:2
chr1	162367103	rs34001279	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,35:32:79:0.443:2	./.	./.	./.	./.	./.	./.	0/1:28,22:32:50:0.440:2
chr1	162546635	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:33:84:0.048:2	./.	./.	./.	./.
chr1	162560209	rs61743694	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:32:132:0.030:2	./.	./.	./.
chr1	162562526	rs41271989	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,86:31:187:0.460:2
chr1	162569103	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:32:83:0.048:2	./.	./.	./.	./.
chr1	162569150	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:30:81:0.049:2	./.	./.	./.	./.
chr1	162569157	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:33:75:0.053:2	./.	./.	./.	./.
chr1	162737116	rs2298258	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:74,50:32:124:0.403:2	0/1:35,35:32:70:0.500:2	./.	./.	0/1:66,67:32:133:0.504:2	./.	0/1:84,50:32:134:0.373:2	./.	./.	0/1:75,41:32:116:0.353:2	./.
chr1	162740313	rs77385055	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,59:28:171:0.345:2	0/1:53,47:29:100:0.470:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	162740327	rs1780003	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,161:29:162:1.00:2	0/1:0,110:29:110:1.00:2	0/1:0,26:28:26:1.00:2	0/1:0,178:29:179:1.00:2	0/1:0,172:29:172:1.00:2	0/1:0,183:29:183:1.00:2	0/1:1,186:30:187:0.995:2	0/1:0,174:29:174:1.00:2	0/1:0,183:31:183:1.00:2	0/1:0,177:29:177:1.00:2	0/1:1,167:29:171:0.994:2
chr1	162760565	rs12118590	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:112,73:31:185:0.395:2	./.	./.	./.	0/1:98,85:32:183:0.464:2	./.	./.
chr1	162760622	rs116929795	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,69:32:181:0.381:2	0/1:106,57:31:164:0.350:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	162774072	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,5:31:186:0.027:2	./.	./.	./.	./.
chr1	162775267	rs12563263	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:81,37:32:118:0.314:2	0/1:51,27:31:78:0.346:2	0/1:14,7:31:21:0.333:2	./.	./.	0/1:71,39:29:110:0.355:2	0/1:69,38:31:107:0.355:2	0/1:7,101:31:108:0.935:2	./.	0/1:55,35:31:90:0.389:2	./.
chr1	162775270	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:30:108:0.037:2	./.	./.	./.	./.
chr1	162782145	rs2684875	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,66:34:149:0.443:2	./.	./.	0/1:76,64:33:140:0.457:2	./.	./.	./.	./.
chr1	162782178	rs201944635	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:98,17:33:115:0.148:2	0/1:72,12:33:84:0.143:2	./.	0/1:76,12:33:88:0.136:2	./.	0/1:106,10:31:116:0.086:2	0/1:72,16:33:89:0.182:2	0/1:54,15:34:69:0.217:2	0/1:82,30:34:112:0.268:2	0/1:72,32:33:104:0.308:2	0/1:135,12:32:147:0.082:2
chr1	162824553	rs78851184	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,12:32:25:0.480:2	./.	./.	./.	0/1:0,36:33:36:1.00:2	./.	./.
chr1	162824864	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,98:32:196:0.500:2
chr1	162825457	rs77227460	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,11:31:29:0.379:2	./.	0/1:97,41:31:138:0.297:2	./.	./.	./.	0/1:3,185:32:189:0.984:2	./.	./.
chr1	163122437	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:32:51:0.078:2	./.	./.	./.
chr1	163122448	rs200762280	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,8:33:16:0.500:2	./.	./.	./.	./.
chr1	163172574	rs2292270	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,46:33:120:0.383:2	0/1:1,62:33:63:0.984:2	./.	./.	0/1:63,51:33:114:0.447:2	./.	0/1:35,53:33:88:0.602:2	./.
chr1	163297322	rs16852612	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,64:33:117:0.547:2	./.	0/1:50,48:33:98:0.490:2	./.
chr1	163309219	rs1509022	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:41,36:30:77:0.468:2	0/1:26,16:31:42:0.381:2	./.	0/1:34,34:30:68:0.500:2	0/1:0,53:30:53:1.00:2	0/1:1,52:30:53:0.981:2	0/1:22,34:30:56:0.607:2	0/1:41,32:31:73:0.438:2	0/1:0,75:31:75:1.00:2	0/1:40,32:31:72:0.444:2	0/1:0,112:31:113:1.00:2
chr1	163313539	rs11802875	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,8:32:42:0.190:2	./.	0/1:24,28:32:52:0.538:2	./.
chr1	164529120	rs2275558	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:6,19:31:25:0.760:2	0/1:5,3:31:8:0.375:2	0/1:0,5:32:5:1.00:2	./.	0/1:0,25:31:25:1.00:2	./.	./.	0/1:17,24:32:41:0.585:2	./.	./.	./.
chr1	165173216	rs1354509	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:32:73:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,95:32:95:1.00:2	0/1:2,103:33:105:0.981:2	0/1:0,94:32:95:1.00:2	0/1:0,110:33:110:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,100:32:100:1.00:2
chr1	165218679	rs9970062	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,60:29:105:0.571:2	0/1:32,28:30:60:0.467:2	0/1:0,3:26:3:1.00:2	0/1:64,60:30:124:0.484:2	./.	0/1:49,60:29:109:0.550:2	0/1:74,66:29:140:0.471:2	./.	0/1:1,146:30:147:0.993:2	0/1:40,49:30:89:0.551:2	./.
chr1	165218792	rs10753668	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,59:31:93:0.634:2	./.	./.	./.	./.	./.	0/1:54,42:32:96:0.438:2
chr1	165377552	rs2134095	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:31:57:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,57:30:57:1.00:2	0/1:1,59:30:60:0.983:2	0/1:0,58:30:58:1.00:2	0/1:1,79:30:80:0.988:2	0/1:36,22:31:58:0.379:2	0/1:0,52:31:52:1.00:2	0/1:0,91:31:91:1.00:2
chr1	165389129	rs1128977	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,35:31:59:0.593:2	./.	0/1:0,48:31:48:1.00:2	0/1:1,64:31:65:0.985:2	./.	0/1:40,20:32:60:0.333:2	0/1:0,55:31:55:1.00:2	0/1:0,74:32:74:1.00:2
chr1	165397966	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,26:32:41:0.634:2	./.	./.	./.	./.	./.
chr1	165398115	rs113471	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:31,27:29:58:0.466:2	0/1:20,24:29:44:0.545:2	./.	0/1:58,53:30:111:0.477:2	./.	./.	./.	./.	./.	./.	./.
chr1	165532746	rs17407838	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,61:32:61:1.00:2	./.	./.
chr1	165533005	rs453717	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:25,22:31:47:0.468:2	0/1:8,15:32:23:0.652:2	0/1:6,7:32:13:0.538:2	./.	0/1:33,31:30:64:0.484:2	0/1:40,42:32:82:0.512:2	./.	./.	./.	./.	0/1:40,30:32:70:0.429:2
chr1	165533009	rs114914708	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:34:85:0.047:2	./.	./.	./.	./.	./.
chr1	165601466	rs9333378	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,30:31:30:1.00:2	0/1:0,26:31:26:1.00:2	./.	0/1:0,59:31:59:1.00:2	0/1:34,8:31:42:0.190:2	0/1:30,45:31:75:0.600:2	0/1:0,41:31:41:1.00:2	0/1:0,54:30:54:1.00:2	./.	0/1:0,50:32:50:1.00:2	0/1:0,53:32:53:1.00:2
chr1	165630698	rs6667681	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,44:32:74:0.595:2	0/1:30,32:32:62:0.516:2	0/1:10,6:32:16:0.375:2	0/1:47,56:32:103:0.544:2	0/1:19,28:31:47:0.596:2	0/1:49,39:31:88:0.443:2	0/1:2,65:31:67:0.970:2	0/1:48,58:30:107:0.547:2	0/1:0,66:32:66:1.00:2	0/1:0,69:32:69:1.00:2	0/1:56,45:31:101:0.446:2
chr1	165648710	rs1143660	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,55:31:113:0.487:2	0/1:40,28:32:68:0.412:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	165652273	rs1143659	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:29:11:1.00:2	0/1:36,35:30:71:0.493:2	0/1:0,98:30:98:1.00:2	0/1:0,80:30:80:1.00:2	./.	0/1:0,108:30:108:1.00:2	0/1:26,29:31:55:0.527:2	0/1:21,40:30:61:0.656:2	0/1:0,54:29:54:1.00:2
chr1	165667781	rs12408101	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,15:29:35:0.429:2	0/1:17,7:27:25:0.292:2	0/1:13,14:30:27:0.519:2	./.	0/1:1,32:29:33:0.970:2	0/1:14,10:29:24:0.417:2	./.	0/1:8,7:30:15:0.467:2
chr1	165721418	rs145104339	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,48:32:127:0.378:2	./.	./.	./.	./.	./.
chr1	165865478	rs11553301	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,13:31:18:0.722:2	./.	0/1:83,58:31:141:0.411:2	./.	0/1:64,58:31:122:0.475:2	0/1:62,80:32:142:0.563:2	0/1:67,50:32:117:0.427:2	./.	./.
chr1	166039898	rs41269662	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,33:31:68:0.485:2	0/1:60,38:31:98:0.388:2	./.	./.	./.	./.	0/1:21,31:32:52:0.596:2
chr1	166818566	rs2075946	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	0/1:10,8:28:18:0.444:2	./.	0/1:18,4:30:22:0.182:2	./.	./.
chr1	166818839	rs143063474	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,26:31:45:0.578:2	./.	./.	./.	./.	./.
chr1	166905927	rs33958744	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:83,59:32:142:0.415:2	0/1:40,41:33:81:0.506:2	0/1:14,16:32:31:0.533:2	./.	./.	./.	0/1:108,88:32:196:0.449:2	./.	./.	./.	0/1:86,52:31:139:0.377:2
chr1	166908811	rs41269698	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,48:31:113:0.425:2	./.	./.	./.	./.
chr1	166958601	rs2296837	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:15,23:32:38:0.605:2	0/1:15,16:32:31:0.516:2	0/1:4,3:33:7:0.429:2	./.	./.	./.	0/1:54,47:32:101:0.465:2	0/1:56,36:32:92:0.391:2	0/1:34,18:33:52:0.346:2	./.	0/1:25,14:31:39:0.359:2
chr1	166958710	rs11578336	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:15,15:31:30:0.500:2	0/1:10,10:30:20:0.500:2	0/1:5,3:32:8:0.375:2	./.	./.	./.	0/1:37,26:31:63:0.413:2	0/1:50,24:26:74:0.324:2	0/1:18,19:30:37:0.514:2	./.	0/1:16,8:32:24:0.333:2
chr1	166963234	rs3736988	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,14:32:32:0.438:2	0/1:18,8:32:26:0.308:2	./.	0/1:25,15:32:40:0.375:2	0/1:8,11:32:19:0.579:2	0/1:0,24:32:24:1.00:2	./.	0/1:23,19:32:42:0.452:2	0/1:0,34:34:34:1.00:2	0/1:10,21:33:31:0.677:2	0/1:23,24:34:47:0.511:2
chr1	167059462	rs2281963	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:23,28:32:51:0.549:2	0/1:15,15:32:30:0.500:2	0/1:0,9:32:9:1.00:2	./.	0/1:0,72:32:72:1.00:2	0/1:0,53:32:53:1.00:2	./.	0/1:50,39:32:89:0.438:2	0/1:43,23:32:66:0.348:2	0/1:0,56:31:57:1.00:2	./.
chr1	167086718	rs149732757	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,31:33:71:0.437:2	0/1:20,21:33:41:0.512:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	167095163	rs267745	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,19:29:43:0.442:2	0/1:16,15:28:31:0.484:2	./.	0/1:0,66:29:66:1.00:2	0/1:32,29:30:61:0.475:2	0/1:27,17:29:44:0.386:2	./.	0/1:30,31:28:61:0.508:2	0/1:0,55:29:55:1.00:2	0/1:31,21:30:52:0.404:2	0/1:1,52:29:53:0.981:2
chr1	167095765	rs6668826	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,32:29:61:0.525:2	./.	0/1:30,46:31:76:0.605:2	./.	./.	./.
chr1	167095881	rs3795605	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,69:30:151:0.457:2	./.	0/1:73,96:30:169:0.568:2	./.	./.	./.
chr1	167096005	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:32:182:0.022:2	./.	./.
chr1	167096640	rs201795536	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,55:31:92:0.598:2	./.
chr1	167096931	rs267746	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,76:32:80:0.950:2	./.	./.	./.	./.	./.	./.	./.
chr1	167096997	rs113448705	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,15:31:33:0.455:2	./.	./.	./.	./.	./.	./.
chr1	167097567	rs61748784	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:16,24:31:40:0.600:2	0/1:19,13:32:32:0.406:2	./.	./.	0/1:14,12:31:26:0.462:2	./.	./.	./.	0/1:0,42:31:42:1.00:2	0/1:13,13:32:26:0.500:2	0/1:0,39:32:39:1.00:2
chr1	167097739	rs2281959	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,11:32:23:0.478:2	0/1:6,3:31:9:0.333:2	./.	./.	0/1:20,18:30:38:0.474:2	0/1:28,13:31:41:0.317:2	./.	0/1:7,13:31:20:0.650:2	0/1:0,24:31:24:1.00:2	0/1:14,11:31:25:0.440:2	0/1:0,28:31:28:1.00:2
chr1	167403317	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:32:88:0.045:2	./.	./.	./.
chr1	167408565	rs12141641	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,69:32:166:0.416:2	0/1:75,56:32:131:0.427:2	./.	./.	./.
chr1	167654664	rs374085828	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,21:32:51:0.412:2	0/1:18,12:31:30:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	167663476	rs7554805	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,36:29:94:0.383:2	./.	./.	./.	./.	0/1:32,39:31:71:0.549:2	./.
chr1	167779008	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:34:156:0.026:2	./.
chr1	167802344	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,4:31:84:0.048:2	./.	./.	./.	./.	./.	./.
chr1	167817639	rs203795	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,36:29:62:0.581:2	0/1:29,19:28:48:0.396:2	./.	0/1:34,61:30:95:0.642:2	0/1:1,61:29:62:0.984:2	0/1:0,72:29:72:1.00:2	0/1:41,47:30:88:0.534:2	0/1:0,74:29:74:1.00:2	./.	0/1:0,81:29:81:1.00:2	0/1:0,102:30:102:1.00:2
chr1	167825485	rs2071921	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,75:29:191:0.393:2	0/1:91,84:29:175:0.480:2	0/1:1,168:30:169:0.994:2	0/1:93,88:29:181:0.486:2	./.	./.	0/1:88,89:29:177:0.503:2	./.
chr1	167825606	rs2071922	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:46,3:33:49:0.061:2	./.	./.	./.	0/1:40,38:32:78:0.487:2	./.	./.	./.	./.	./.
chr1	167839578	rs67878347	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:40,31:32:71:0.437:2	0/1:28,23:32:51:0.451:2	./.	0/1:51,21:32:72:0.292:2	0/1:30,15:30:45:0.333:2	0/1:0,53:30:53:1.00:2	./.	./.	./.	0/1:42,37:31:79:0.468:2	./.
chr1	167849414	rs203849	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:52,32:31:84:0.381:2	0/1:14,27:31:41:0.659:2	./.	0/1:3,83:31:86:0.965:2	0/1:53,47:31:100:0.470:2	0/1:0,107:30:107:1.00:2	./.	./.	0/1:71,57:31:128:0.445:2	0/1:4,85:30:89:0.955:2	./.
chr1	167865871	rs16859886	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,28:31:49:0.571:2	0/1:17,12:30:29:0.414:2	./.
chr1	167871060	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:31:38:0.105:2	./.
chr1	167893759	rs9618	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,14:32:30:0.467:2	0/1:17,5:32:22:0.227:2	./.	./.	./.	0/1:21,6:31:27:0.222:2	./.	./.	0/1:17,10:33:27:0.370:2	0/1:18,10:29:28:0.357:2	./.
chr1	167906239	rs203788	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,12:32:12:1.00:2	0/1:0,11:30:11:1.00:2	./.	0/1:0,29:30:29:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,14:30:14:1.00:2
chr1	167935947	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:125,4:31:129:0.031:2	./.	0/1:129,4:34:133:0.030:2	./.	./.	./.	./.	./.
chr1	167973874	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:33:118:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	167973976	rs1060041	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,40:31:86:0.465:2	0/1:22,25:31:47:0.532:2	./.	./.	./.	0/1:63,55:30:118:0.466:2	./.	./.	./.	./.	./.
chr1	168013850	rs11558511	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,43:30:81:0.531:2	0/1:1,34:31:35:0.971:2	0/1:34,45:30:79:0.570:2	0/1:33,34:29:67:0.507:2	0/1:50,40:30:90:0.444:2	./.	0/1:34,35:30:69:0.507:2	0/1:1,75:31:76:0.987:2
chr1	168014204	rs41271647	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:90,68:32:158:0.430:2	0/1:67,69:32:136:0.507:2	0/1:5,3:31:8:0.375:2	0/1:72,64:31:136:0.471:2	./.	./.	./.	./.	./.	./.	./.
chr1	168044653	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:31:118:0.034:2	./.	./.	./.	./.	./.
chr1	168054770	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:119,4:30:123:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr1	168059866	rs275149	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,14:27:43:0.359:2	0/1:21,14:29:35:0.400:2	./.	./.	./.	./.	./.	./.	0/1:0,36:26:40:1.00:2	./.	./.
chr1	168065944	rs372585493	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,16:29:32:0.500:2	./.	./.	./.
chr1	168153195	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:34:183:0.022:2
chr1	168195312	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.	./.	./.	./.	./.
chr1	168266901	rs78189582	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,61:33:148:0.412:2	./.	./.
chr1	168510202	rs149372418	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2
chr1	168511281	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,88:33:169:0.521:2
chr1	168511284	rs4282797	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,5:28:19:0.263:2	./.	./.	./.	./.	0/1:106,24:26:130:0.185:2	0/1:122,32:29:154:0.208:2	0/1:93,24:29:117:0.205:2	./.
chr1	168511321	rs4501820	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,27:31:73:0.370:2	./.	0/1:62,5:32:67:0.075:2	0/1:66,4:29:70:0.057:2	0/1:0,24:32:24:1.00:2	./.
chr1	168511325	rs4301615	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,24:32:69:0.348:2	./.	./.	0/1:61,4:32:65:0.062:2	0/1:0,24:33:24:1.00:2	./.
chr1	168513129	rs3820405	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,5:31:16:0.313:2	./.	./.	./.	0/1:134,7:31:141:0.050:2	0/1:100,82:31:182:0.451:2	0/1:92,71:32:163:0.436:2	0/1:78,65:32:143:0.455:2	./.
chr1	168513214	rs3820406	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,3:33:37:0.081:2	0/1:17,3:32:20:0.150:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,8:31:59:0.136:2
chr1	168545864	rs116453184	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,43:28:94:0.457:2	0/1:45,17:26:62:0.274:2	0/1:46,44:28:90:0.489:2	./.	./.	0/1:29,23:29:52:0.442:2	./.
chr1	168545949	rs34933908	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,76:31:112:0.679:2	0/1:25,45:32:70:0.643:2	0/1:13,6:31:19:0.316:2	0/1:4,133:31:137:0.971:2	0/1:57,99:31:156:0.635:2	0/1:85,50:31:135:0.370:2	0/1:50,127:31:177:0.718:2	0/1:82,81:31:163:0.497:2	0/1:67,52:32:120:0.437:2	0/1:3,89:32:92:0.967:2	0/1:54,72:31:126:0.571:2
chr1	168549362	rs149760054	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,28:32:197:0.142:2	./.	./.	./.	0/1:168,27:33:196:0.138:2	./.
chr1	168698173	rs1052591	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:101,91:30:192:0.474:2	0/1:73,52:31:125:0.416:2	0/1:1,23:31:24:0.958:2	./.	0/1:128,68:30:196:0.347:2	0/1:1,180:31:181:0.994:2	0/1:116,71:31:187:0.380:2	0/1:97,87:31:184:0.473:2	0/1:3,183:31:186:0.984:2	0/1:105,85:31:191:0.447:2	0/1:1,171:31:173:0.994:2
chr1	169272451	rs10800427	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:32:50:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,54:31:54:1.00:2	0/1:1,24:32:25:0.960:2	0/1:0,42:32:42:1.00:2	0/1:0,67:33:67:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,71:32:71:1.00:2
chr1	169272453	rs10800428	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:32:50:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,71:32:71:1.00:2
chr1	169293721	rs1140523	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,8:31:28:0.286:2	./.	./.	0/1:0,20:31:20:1.00:2	0/1:21,17:31:38:0.447:2	0/1:23,5:32:28:0.179:2	./.	0/1:0,23:31:23:1.00:2
chr1	169336983	rs201280194	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,18:32:48:0.375:2	./.	./.	./.
chr1	169346081	rs142091756	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,9:33:24:0.375:2	./.
chr1	169390957	rs35107735	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:44,55:31:100:0.556:2	0/1:32,17:31:49:0.347:2	./.	0/1:62,52:31:115:0.456:2	./.	./.	0/1:37,39:31:76:0.513:2	./.	0/1:53,64:32:117:0.547:2	0/1:36,31:32:67:0.463:2	0/1:0,116:32:116:1.00:2
chr1	169391037	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,7:30:187:0.037:2
chr1	169391038	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,8:28:187:0.043:2
chr1	169391154	rs3820059	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,30:34:31:1.00:2	0/1:0,21:33:21:1.00:2	./.	0/1:19,20:32:39:0.513:2	./.	./.	0/1:0,29:33:29:1.00:2	0/1:2,48:33:50:0.960:2	0/1:8,23:34:31:0.742:2	0/1:0,28:33:28:1.00:2	0/1:0,64:34:64:1.00:2
chr1	169483561	rs6027	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,9:32:14:0.643:2	0/1:6,8:32:14:0.571:2	./.	./.	./.
chr1	169498975	rs6030	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,9:32:13:0.692:2	0/1:0,98:33:98:1.00:2	0/1:29,31:32:60:0.517:2	0/1:65,39:33:104:0.375:2	0/1:46,29:32:75:0.387:2	0/1:49,51:33:100:0.510:2	0/1:62,52:34:114:0.456:2	./.	./.
chr1	169510139	rs13306334	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,4:31:98:0.041:2	./.	./.	./.	./.	./.	./.
chr1	169510233	rs9332607	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:99,87:31:186:0.468:2	0/1:70,51:30:122:0.421:2	0/1:11,11:29:22:0.500:2	./.	./.	0/1:100,71:30:171:0.415:2	./.	./.	0/1:94,83:31:178:0.469:2	0/1:4,149:31:153:0.974:2	0/1:4,162:31:167:0.976:2
chr1	169510246	rs200676405	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:177,4:32:181:0.022:2	0/1:128,4:32:132:0.030:2	./.	./.	./.	0/1:178,5:32:183:0.027:2	./.	./.	./.	./.	./.
chr1	169510293	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:173,6:26:180:0.034:2	./.	0/1:181,7:30:188:0.037:2	./.	./.	./.	./.	./.
chr1	169510328	rs147741798	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:169,4:32:173:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr1	169510348	rs1800595	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,77:29:155:0.497:2	0/1:106,70:29:176:0.398:2	./.	./.	./.
chr1	169510354	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:32:175:0.023:2	./.	./.	./.	./.	./.
chr1	169510367	rs112331368	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:153,10:31:163:0.061:2	0/1:144,5:32:149:0.034:2	0/1:164,8:29:173:0.047:2	0/1:164,8:29:172:0.047:2	./.	0/1:172,8:33:180:0.044:2	./.	./.
chr1	169510380	rs9287090	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,9:31:26:0.346:2	0/1:14,140:30:154:0.909:2	0/1:94,39:31:133:0.293:2	0/1:90,85:30:176:0.486:2	./.	./.	0/1:100,77:32:177:0.435:2	./.	./.
chr1	169510475	rs1046712	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:117,73:32:190:0.384:2	0/1:66,39:32:105:0.371:2	./.	./.	0/1:76,43:30:119:0.361:2	./.	./.	0/1:104,82:31:186:0.441:2	./.	./.	./.
chr1	169510489	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,5:32:146:0.034:2	./.	./.	./.	./.
chr1	169510502	rs140018525	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,7:31:136:0.051:2	./.	0/1:144,4:32:148:0.027:2	0/1:182,7:32:189:0.037:2	0/1:179,9:28:188:0.048:2	./.	./.
chr1	169510524	rs1800594	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:109,7:29:116:0.060:2	0/1:12,10:31:22:0.455:2	0/1:3,175:32:178:0.983:2	0/1:56,76:31:132:0.576:2	0/1:93,81:31:176:0.466:2	0/1:81,64:32:146:0.441:2	0/1:98,85:32:183:0.464:2	0/1:88,93:33:182:0.514:2	./.	./.
chr1	169511403	rs41272457	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,43:33:92:0.467:2	./.	./.	./.	./.	./.	./.	./.
chr1	169511555	rs6032	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:33:7:0.571:2	0/1:3,126:32:129:0.977:2	0/1:60,34:32:94:0.362:2	0/1:53,47:31:100:0.470:2	./.	./.	0/1:83,72:33:155:0.465:2	./.	./.
chr1	169511585	rs9332695	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,76:32:171:0.444:2
chr1	169511734	rs4525	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,27:29:38:0.711:2	0/1:2,181:29:183:0.989:2	0/1:91,91:28:183:0.500:2	0/1:88,96:28:184:0.522:2	./.	./.	0/1:110,82:30:192:0.427:2	./.	./.
chr1	169511755	rs4524	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,17:32:26:0.654:2	0/1:3,152:34:155:0.981:2	0/1:79,82:32:161:0.509:2	0/1:79,81:32:160:0.506:2	./.	./.	0/1:102,70:34:172:0.407:2	./.	./.
chr1	169511878	rs6018	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,61:32:125:0.488:2	0/1:76,79:32:155:0.510:2	./.	./.	./.
chr1	169512027	rs6021	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:31:10:0.400:2	0/1:2,97:29:99:0.980:2	0/1:25,35:29:60:0.583:2	0/1:44,29:29:73:0.397:2	./.	./.	0/1:50,42:31:92:0.457:2	./.	./.
chr1	169512039	rs6024	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,35:31:84:0.422:2	0/1:51,39:32:90:0.433:2	./.	./.	./.
chr1	169512093	rs6017	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,8:31:18:0.444:2	0/1:0,144:32:144:1.00:2	0/1:47,52:31:99:0.525:2	0/1:61,43:33:104:0.413:2	./.	./.	0/1:62,47:33:109:0.431:2	./.	./.
chr1	169512120	rs6016	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,10:30:23:0.435:2	0/1:0,134:30:134:1.00:2	0/1:63,55:30:118:0.466:2	0/1:65,51:30:116:0.440:2	./.	./.	0/1:61,66:32:127:0.520:2	./.	./.
chr1	169513583	rs6037	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,54:30:112:0.482:2	./.	0/1:72,28:29:100:0.280:2	./.	./.
chr1	169515726	rs6036	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,55:33:128:0.430:2	./.	0/1:75,45:32:120:0.375:2	./.	./.
chr1	169519049	rs6025	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:32:75:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,8:31:8:1.00:2	0/1:1,83:31:84:0.988:2	0/1:0,62:31:62:1.00:2	0/1:0,92:30:92:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,86:31:86:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,102:31:102:1.00:2
chr1	169519894	rs6015	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,5:32:23:0.217:2	./.	0/1:18,9:32:27:0.333:2	./.	./.
chr1	169521849	rs6035	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,89:32:167:0.533:2	./.	./.	./.	./.	./.	./.
chr1	169521853	rs6033	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,71:29:166:0.428:2	./.	0/1:94,97:30:191:0.508:2	./.	./.
chr1	169529826	rs6022	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,38:32:66:0.585:2	0/1:24,26:32:50:0.520:2	./.	./.	./.	0/1:43,42:32:85:0.494:2	0/1:40,43:32:83:0.518:2	./.	./.	0/1:29,28:32:57:0.491:2	./.
chr1	169529973	rs6029	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,42:33:77:0.545:2	0/1:28,24:32:52:0.462:2	./.	./.	./.	0/1:60,54:32:114:0.474:2	0/1:60,48:33:108:0.444:2	./.	./.	0/1:56,39:33:95:0.411:2	./.
chr1	169541513	rs6019	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,7:32:21:0.333:2	./.	./.	./.	./.
chr1	169551682	rs6028	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,18:33:73:0.247:2	./.	0/1:45,31:32:76:0.408:2	0/1:20,8:33:28:0.286:2	0/1:0,34:33:34:1.00:2	0/1:49,27:33:76:0.355:2	0/1:51,21:32:72:0.292:2	./.
chr1	169562904	rs6128	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,54:32:54:1.00:2	0/1:1,16:32:17:0.941:2	./.	./.	./.	./.	0/1:45,27:32:72:0.375:2	./.	./.	./.	./.
chr1	169565284	rs3917813	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,54:33:151:0.358:2	./.
chr1	169565346	rs6133	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:45,49:31:94:0.521:2	0/1:30,27:31:57:0.474:2	./.	./.	./.	./.	0/1:57,41:30:98:0.418:2	./.	./.	0/1:65,41:31:106:0.387:2	./.
chr1	169566242	rs3917805	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,24:29:77:0.312:2	./.
chr1	169566308	rs6132	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:53,31:32:84:0.369:2	0/1:30,17:31:47:0.362:2	./.	./.	./.	./.	0/1:49,33:32:82:0.402:2	./.	./.	0/1:45,31:31:76:0.408:2	./.
chr1	169566313	rs6127	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,83:31:83:1.00:2	0/1:0,47:31:47:1.00:2	./.	0/1:64,63:30:127:0.496:2	./.	0/1:0,93:30:93:1.00:2	0/1:1,80:30:81:0.988:2	0/1:1,164:30:165:0.994:2	0/1:70,43:31:113:0.381:2	0/1:0,76:30:76:1.00:2	0/1:82,69:30:151:0.457:2
chr1	169566326	rs6135	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:47,26:32:73:0.356:2	0/1:28,20:29:48:0.417:2	./.	./.	./.	./.	0/1:58,35:32:93:0.376:2	./.	./.	0/1:43,29:31:72:0.403:2	./.
chr1	169580885	rs6131	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,27:31:71:0.380:2	./.	0/1:1,89:31:90:0.989:2	./.	./.	./.
chr1	169582317	rs6125	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,17:32:34:0.500:2	./.	./.	./.
chr1	169599263	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,51:31:111:0.459:2	0/1:34,25:32:59:0.424:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	169660939	rs4987382	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:33:5:0.800:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	169673838	rs2229569	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,24:32:48:0.500:2	0/1:35,27:34:62:0.435:2	./.	./.
chr1	169676486	rs1131498	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,122:32:126:0.968:2	./.	./.	./.	./.	0/1:78,77:33:155:0.497:2	0/1:58,38:33:96:0.396:2	./.
chr1	169677709	rs1051091	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,68:32:126:0.540:2	./.	0/1:1,159:32:160:0.994:2	0/1:64,76:33:140:0.543:2	./.	./.
chr1	169694918	rs5356	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,60:30:111:0.541:2	./.	./.	./.
chr1	169695870	rs5355	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,55:30:109:0.505:2	./.	./.
chr1	169696946	rs5368	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,70:31:156:0.449:2	./.	./.	./.
chr1	169698670	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:30:136:0.029:2	./.	./.	./.
chr1	169698789	rs5363	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,27:32:64:0.422:2	./.	0/1:32,36:32:68:0.529:2	./.	./.	./.
chr1	169701060	rs5361	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,77:29:162:0.475:2	./.	0/1:125,69:30:194:0.356:2	./.	./.	./.
chr1	169701901	rs1800016	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,50:32:117:0.427:2	./.	0/1:86,48:32:134:0.358:2	./.	./.	./.
chr1	169701904	rs1800015	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,50:29:118:0.424:2	./.	0/1:86,48:30:134:0.358:2	./.	./.	./.
chr1	169702705	rs932307	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,21:30:39:0.538:2	./.	0/1:0,33:32:33:1.00:2	0/1:40,31:33:71:0.437:2	./.	./.
chr1	169702772	rs1805193	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,12:30:35:0.343:2	./.	0/1:31,8:31:39:0.205:2	./.	./.	./.
chr1	169762807	rs10489177	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,71:30:71:1.00:2	0/1:0,28:29:28:1.00:2	0/1:2,4:30:6:0.667:2	./.	0/1:32,16:29:48:0.333:2	./.	0/1:20,19:28:39:0.487:2	./.	./.	0/1:23,19:29:42:0.452:2	0/1:42,46:28:88:0.523:2
chr1	169762996	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:32:69:0.058:2
chr1	169773317	rs11590604	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,39:30:110:0.355:2	./.	./.	./.
chr1	169799880	rs2272920	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,55:31:115:0.478:2	0/1:88,57:31:145:0.393:2	./.	0/1:88,70:32:158:0.443:2	./.	./.	./.
chr1	169823660	rs1062976	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,71:28:71:1.00:2	./.	./.	./.	./.	0/1:38,35:30:73:0.479:2	0/1:24,37:27:61:0.607:2	0/1:46,32:29:78:0.410:2
chr1	169823718	rs4656197	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,41:28:42:0.976:2	0/1:0,32:28:32:1.00:2	0/1:4,6:29:10:0.600:2	0/1:0,44:29:44:1.00:2	0/1:16,21:29:37:0.568:2	./.	0/1:21,11:29:32:0.344:2	0/1:20,21:29:41:0.512:2	0/1:0,28:30:28:1.00:2	0/1:0,27:29:27:1.00:2	0/1:24,15:29:39:0.385:2
chr1	169823790	rs12143301	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,13:29:37:0.351:2	0/1:17,4:32:21:0.190:2	./.	0/1:26,23:29:49:0.469:2	./.	./.	./.
chr1	169823959	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:31:111:0.036:2	./.	./.	./.	./.	./.
chr1	169824068	rs12132384	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,15:30:32:0.469:2	0/1:11,6:31:17:0.353:2	./.	0/1:8,6:31:14:0.429:2	./.	./.	./.
chr1	169824104	rs12135726	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,10:26:18:0.556:2	0/1:2,3:27:5:0.600:2	./.	0/1:4,5:30:9:0.556:2	./.	./.	./.
chr1	169828327	rs17602701	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,58:31:124:0.468:2	0/1:60,57:31:117:0.487:2	./.	0/1:75,56:31:131:0.427:2	./.	./.	./.
chr1	169923162	rs182996592	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,12:31:31:0.387:2	./.	./.	./.	./.	./.	./.
chr1	169951997	rs33943686	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:29:8:0.375:2	./.	./.	0/1:23,16:32:39:0.410:2	./.	./.	./.	./.	0/1:32,29:32:61:0.475:2
chr1	170135669	rs6427234	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,30:32:52:0.577:2	0/1:32,10:32:42:0.238:2	0/1:6,4:32:10:0.400:2	0/1:43,30:30:73:0.411:2	0/1:1,39:30:40:0.975:2	0/1:34,19:31:53:0.358:2	0/1:38,29:30:67:0.433:2	./.	./.	./.	./.
chr1	170135693	rs41272485	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,37:33:80:0.463:2	0/1:46,35:32:81:0.432:2	./.	./.	./.	./.	./.
chr1	170135760	rs6427235	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,45:31:105:0.429:2	0/1:44,32:32:76:0.421:2	0/1:8,9:31:17:0.529:2	0/1:63,78:32:141:0.553:2	0/1:1,115:31:116:0.991:2	0/1:85,73:32:158:0.462:2	0/1:85,63:32:148:0.426:2	./.	./.	./.	./.
chr1	170135765	rs6669514	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,49:32:111:0.441:2	0/1:45,33:33:78:0.423:2	0/1:9,9:32:18:0.500:2	0/1:63,77:32:140:0.550:2	0/1:51,67:32:118:0.568:2	./.	0/1:81,67:33:148:0.453:2	./.	./.	./.	./.
chr1	170135828	rs41272487	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,68:29:168:0.405:2	./.	0/1:93,66:30:159:0.415:2	./.
chr1	170136787	rs12075997	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,52:30:103:0.505:2	./.	0/1:36,30:30:66:0.455:2	./.
chr1	170136876	rs144066772	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,37:30:89:0.416:2	./.	./.
chr1	170501385	rs7531125	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:31:61:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,39:32:40:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,43:33:43:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,75:33:75:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,45:32:46:1.00:2
chr1	170521376	rs913257	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:41,44:32:85:0.518:2	0/1:30,39:32:69:0.565:2	./.	./.	0/1:1,90:32:91:0.989:2	./.	0/1:44,39:32:83:0.470:2	0/1:39,54:32:93:0.581:2	0/1:51,44:32:95:0.463:2	0/1:44,34:31:78:0.436:2	0/1:48,58:32:107:0.547:2
chr1	170633448	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:31:88:0.045:2	./.	./.
chr1	170916646	rs4656817	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,82:32:82:1.00:2	./.	./.	./.	./.	./.	./.	0/1:2,125:32:127:0.984:2
chr1	170927615	rs17563089	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:83,58:33:141:0.411:2	0/1:32,26:31:58:0.448:2	./.	0/1:99,73:33:172:0.424:2	./.	./.	./.	./.	./.	./.	./.
chr1	170928671	rs2294740	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,48:33:84:0.578:2
chr1	170941014	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:32:134:0.030:2	./.	./.
chr1	170959029	rs16863922	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,26:32:82:0.317:2	0/1:28,28:32:56:0.500:2	0/1:3,4:31:7:0.571:2	0/1:74,41:31:115:0.357:2	./.	./.	./.	./.	./.	./.	./.
chr1	170959088	rs28634500	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,41:31:97:0.423:2	0/1:40,20:31:60:0.333:2	0/1:10,9:30:19:0.474:2	0/1:84,57:30:141:0.404:2	./.	./.	./.	./.	./.	./.	./.
chr1	170964534	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,4:31:87:0.046:2	./.	./.	./.	./.	./.	./.
chr1	170965681	rs9427213	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,9:29:13:0.692:2	0/1:48,50:32:98:0.510:2	./.	./.	./.	./.	./.	./.	./.
chr1	170983334	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,35:31:60:0.583:2	./.	./.	./.	./.
chr1	170993566	rs17346397	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:31:18:0.500:2	./.	./.	./.	0/1:68,57:32:125:0.456:2	0/1:102,77:33:179:0.430:2	./.	./.	./.
chr1	171076926	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:31:154:0.026:2	./.	./.
chr1	171076966	rs2266782	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,29:32:64:0.453:2	0/1:19,26:32:45:0.578:2	./.	0/1:2,79:32:81:0.975:2	0/1:41,41:31:82:0.500:2	./.	./.	./.	./.	0/1:0,72:31:72:1.00:2	./.
chr1	171083279	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:35:137:0.029:2	./.	./.
chr1	171118708	rs41272513	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,78:29:174:0.448:2
chr1	171154959	rs2020870	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,50:31:103:0.485:2	./.	./.	./.	./.	./.	./.
chr1	171162583	rs2020860	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,14:33:26:0.538:2	./.	0/1:10,20:32:30:0.667:2	./.	./.	0/1:15,10:31:25:0.400:2	0/1:5,10:30:15:0.667:2	./.
chr1	171168497	rs140394156	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,8:32:13:0.615:2	./.	./.	./.	./.	0/1:57,44:31:101:0.436:2	./.	./.	./.
chr1	171168545	rs2307492	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,72:33:153:0.471:2	./.
chr1	171168584	rs2020862	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:108,56:32:164:0.341:2	0/1:53,34:32:87:0.391:2	./.	0/1:92,71:31:163:0.436:2	0/1:112,70:31:182:0.385:2	0/1:95,97:31:192:0.505:2	0/1:0,177:31:177:1.00:2	./.	0/1:120,68:32:188:0.362:2	0/1:103,89:32:192:0.464:2	./.
chr1	171168585	rs2020861	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:107,58:32:165:0.352:2	0/1:54,34:33:88:0.386:2	./.	0/1:92,71:33:163:0.436:2	0/1:112,70:32:182:0.385:2	0/1:93,99:32:192:0.516:2	0/1:1,176:32:177:0.994:2	./.	0/1:122,68:33:190:0.358:2	0/1:0,188:31:189:1.00:2	./.
chr1	171174531	rs2020863	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,36:33:88:0.409:2	0/1:23,24:31:47:0.511:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	171176912	rs2020865	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,26:33:71:0.366:2	./.	0/1:31,46:31:77:0.597:2	./.	./.	0/1:25,45:32:70:0.643:2	0/1:30,15:32:46:0.333:2	./.
chr1	171250044	rs742350	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:82,61:32:143:0.427:2	0/1:36,38:32:74:0.514:2	./.	./.	0/1:99,44:32:143:0.308:2	0/1:92,58:32:150:0.387:2	0/1:7,130:31:137:0.949:2	./.	./.	./.	./.
chr1	171252287	rs1126692	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:97,96:32:194:0.497:2	0/1:78,59:33:137:0.431:2	./.	./.	0/1:70,63:32:133:0.474:2	0/1:88,103:32:191:0.539:2	0/1:2,139:33:142:0.986:2	0/1:189,4:32:193:0.021:2	./.	./.	0/1:96,91:34:187:0.487:2
chr1	171252307	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:32:151:0.026:2	./.	./.	./.	./.
chr1	171303690	rs1042767	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,26:33:54:0.481:2	./.
chr1	171483717	rs1055417	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:31:12:0.500:2	./.	./.	./.	0/1:44,64:30:108:0.593:2	0/1:81,53:29:134:0.396:2	./.	./.	0/1:0,115:29:115:1.00:2
chr1	171483718	rs148272649	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,41:31:113:0.363:2	./.	./.	./.	./.
chr1	171486762	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:33:180:0.022:2	./.	./.	./.	./.
chr1	171486912	rs10913157	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,39:31:80:0.488:2	./.	./.	./.	./.	./.
chr1	171505321	rs138220849	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,92:32:191:0.482:2	./.	./.	./.	./.	./.
chr1	171509327	rs760644	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:30:62:1.00:2	0/1:0,42:30:43:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,99:30:99:1.00:2	0/1:13,33:29:46:0.717:2	0/1:17,40:30:57:0.702:2	0/1:1,72:29:73:0.986:2	0/1:0,70:30:70:1.00:2	./.	0/1:0,68:31:69:1.00:2	0/1:0,92:31:92:1.00:2
chr1	171509414	rs111928000	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,21:31:41:0.512:2
chr1	171509671	rs78008372	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,22:33:33:0.667:2
chr1	171510241	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,9:21:95:0.097:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	171511039	rs1687064	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,25:31:26:0.962:2	0/1:0,24:30:24:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,31:30:31:1.00:2	0/1:13,6:32:19:0.316:2	0/1:0,34:29:34:1.00:2	0/1:0,18:30:18:1.00:2	0/1:1,24:28:25:0.960:2	./.	0/1:0,24:29:24:1.00:2	0/1:0,38:30:39:1.00:2
chr1	171514731	rs235468	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,98:33:98:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,25:32:25:1.00:2	0/1:1,111:32:112:0.991:2	0/1:44,38:32:82:0.463:2	0/1:1,100:32:101:0.990:2	0/1:2,76:32:78:0.974:2	0/1:1,112:32:113:0.991:2	./.	0/1:0,100:32:100:1.00:2	0/1:1,150:32:151:0.993:2
chr1	171526570	rs1687057	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:32:75:1.00:2	0/1:0,46:32:46:1.00:2	0/1:2,16:32:18:0.889:2	0/1:0,93:32:93:1.00:2	0/1:88,68:32:156:0.436:2	0/1:0,79:32:79:1.00:2	0/1:0,168:32:168:1.00:2	0/1:1,119:32:120:0.992:2	./.	0/1:0,76:32:76:1.00:2	0/1:0,78:32:78:1.00:2
chr1	171526910	rs12025905	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,52:27:113:0.473:2	./.	./.	./.	0/1:79,76:28:155:0.490:2	./.	./.	./.
chr1	171527033	rs141768518	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,10:23:26:0.385:2	./.	./.	./.	./.
chr1	171527129	rs150114134	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,14:31:37:0.378:2	./.	./.	./.	./.	./.
chr1	171556165	rs235501	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:31:72:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,5:32:5:1.00:2	0/1:1,96:32:97:0.990:2	0/1:52,45:31:97:0.464:2	0/1:0,97:31:97:1.00:2	0/1:71,48:32:119:0.403:2	0/1:2,83:32:85:0.976:2	./.	0/1:0,74:32:74:1.00:2	0/1:0,156:32:156:1.00:2
chr1	171605161	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,4:32:33:0.121:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	171605539	rs61730974	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,29:29:63:0.460:2	./.	./.	./.	./.	./.	./.	./.
chr1	171621525	rs2234926	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,13:31:27:0.481:2	./.	./.	./.	0/1:117,74:32:191:0.387:2	./.	./.	./.	0/1:86,102:31:188:0.543:2
chr1	171751236	rs2294720	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,22:33:46:0.478:2	./.	./.	0/1:16,17:32:33:0.515:2	0/1:23,25:32:48:0.521:2	./.	0/1:27,18:33:45:0.400:2	./.
chr1	171753039	rs2232816	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,70:29:152:0.464:2	./.	./.	./.	0/1:93,96:30:189:0.508:2	./.	0/1:68,67:29:136:0.496:2	./.
chr1	171753269	rs139771818	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,32:29:62:0.516:2	0/1:22,19:31:41:0.463:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	171755170	rs2232818	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,48:32:111:0.432:2	./.	./.	./.	0/1:54,50:32:104:0.481:2	./.	0/1:47,44:33:91:0.484:2	./.
chr1	171956803	rs3736790	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,6:32:15:0.400:2	./.	./.	./.	./.
chr1	172011152	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:31:95:0.042:2	./.	./.
chr1	172277925	rs34870740	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,10:32:24:0.417:2	0/1:14,4:32:18:0.222:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	172348157	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:33:139:0.029:2	./.
chr1	172356437	rs6688654	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:29:49:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,8:26:8:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,46:29:46:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,56:30:56:1.00:2	0/1:0,37:29:37:1.00:2	0/1:0,23:29:23:1.00:2	0/1:0,60:29:60:1.00:2
chr1	172410967	rs1063412	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,40:31:89:0.449:2	0/1:16,15:31:31:0.484:2	0/1:3,4:32:7:0.571:2	0/1:41,42:31:83:0.506:2	0/1:33,33:31:66:0.500:2	0/1:0,68:31:68:1.00:2	0/1:32,28:31:60:0.467:2	0/1:37,38:32:75:0.507:2	0/1:44,41:33:85:0.482:2	0/1:33,21:32:54:0.389:2	0/1:35,51:31:86:0.593:2
chr1	172411496	rs2230471	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:32:22:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,3:33:3:1.00:2	0/1:16,11:31:27:0.407:2	0/1:0,24:30:24:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,18:32:18:1.00:2	0/1:2,23:32:25:0.920:2	0/1:0,27:32:27:1.00:2	0/1:0,21:31:21:1.00:2	0/1:18,15:31:34:0.455:2
chr1	172411768	rs13932	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:26,27:33:53:0.509:2	0/1:15,14:33:29:0.483:2	0/1:0,5:33:5:1.00:2	./.	0/1:29,23:33:52:0.442:2	./.	./.	0/1:27,23:32:50:0.460:2	0/1:49,39:33:88:0.443:2	0/1:22,25:32:47:0.532:2	./.
chr1	172412027	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,3:30:31:0.097:2	./.	./.	./.	./.	./.	./.	./.
chr1	172412845	rs60302909	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:27,26:30:53:0.491:2	0/1:16,15:31:31:0.484:2	0/1:2,8:29:10:0.800:2	./.	0/1:29,29:30:58:0.500:2	./.	./.	0/1:50,39:30:89:0.438:2	0/1:40,27:31:67:0.403:2	0/1:34,23:31:57:0.404:2	./.
chr1	172412995	rs3213563	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,27:32:60:0.450:2	0/1:19,18:32:37:0.486:2	0/1:8,9:34:17:0.529:2	0/1:49,51:32:100:0.510:2	0/1:38,38:32:76:0.500:2	0/1:0,89:32:89:1.00:2	0/1:2,88:32:90:0.978:2	0/1:42,64:32:106:0.604:2	0/1:41,31:33:72:0.431:2	0/1:29,25:33:54:0.463:2	0/1:58,34:32:92:0.370:2
chr1	172422209	rs2285175	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:36,40:32:76:0.526:2	0/1:16,31:32:47:0.660:2	0/1:10,3:31:13:0.231:2	./.	0/1:58,49:32:107:0.458:2	./.	./.	0/1:56,69:31:125:0.552:2	0/1:60,43:31:103:0.417:2	0/1:56,60:31:116:0.517:2	./.
chr1	172425640	rs78728841	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:29:7:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	172437592	rs1129942	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:31:34:1.00:2	0/1:1,35:32:36:0.972:2	0/1:0,5:31:5:1.00:2	0/1:25,33:31:58:0.569:2	0/1:0,32:30:32:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,54:31:54:1.00:2	0/1:45,20:32:65:0.308:2
chr1	172501643	rs2239816	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,30:32:53:0.566:2	0/1:20,26:30:46:0.565:2	./.	0/1:19,21:31:40:0.525:2	0/1:26,26:31:52:0.500:2	./.	0/1:20,8:29:28:0.286:2	./.
chr1	172502340	rs2285143	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr1	172502444	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:33:82:0.049:2
chr1	172502479	rs2285144	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,10:33:21:0.476:2	0/1:78,60:33:138:0.435:2	0/1:2,158:32:160:0.988:2	0/1:80,56:32:136:0.412:2	0/1:60,47:33:107:0.439:2	0/1:79,50:32:129:0.388:2	0/1:66,40:33:106:0.377:2	0/1:40,54:32:94:0.574:2	./.
chr1	172525158	rs114570278	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:30:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	172547465	rs2285664	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,51:33:151:0.338:2	0/1:38,50:32:88:0.568:2	./.	0/1:66,40:32:106:0.377:2	0/1:69,79:33:148:0.534:2	./.	0/1:41,71:33:112:0.634:2	./.
chr1	172558524	rs41264546	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,17:29:32:0.531:2	./.	./.	./.	0/1:30,20:29:50:0.400:2	./.	./.
chr1	172560216	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,13:31:147:0.088:2	./.	./.	./.	./.	./.	./.	./.
chr1	173020073	rs185993550	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,101:33:197:0.513:2	./.
chr1	173472465	rs72709309	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,32:32:49:0.653:2	./.
chr1	173474429	rs12026637	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:21,37:33:58:0.638:2	0/1:10,15:32:25:0.600:2	./.	./.	0/1:36,14:33:50:0.280:2	./.	./.	0/1:71,36:33:107:0.336:2	0/1:45,32:34:77:0.416:2	0/1:37,39:33:76:0.513:2	0/1:49,33:34:82:0.402:2
chr1	173495780	rs113016824	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,25:31:90:0.278:2	./.	./.	./.	./.	./.	./.
chr1	173516871	rs16846206	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:52,37:32:89:0.416:2	0/1:27,16:32:43:0.372:2	./.	./.	0/1:78,54:31:132:0.409:2	./.	./.	0/1:66,56:32:122:0.459:2	0/1:95,72:33:168:0.431:2	0/1:79,50:32:129:0.388:2	0/1:88,77:32:166:0.467:2
chr1	173516903	rs10494490	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:51,32:31:83:0.386:2	0/1:24,13:31:37:0.351:2	./.	./.	0/1:66,42:30:108:0.389:2	./.	./.	0/1:51,50:29:102:0.495:2	0/1:85,61:31:146:0.418:2	0/1:71,40:28:111:0.360:2	0/1:78,63:30:141:0.447:2
chr1	173552663	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:33:78:0.051:2
chr1	173569310	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:33:152:0.026:2	./.	./.	./.	./.	./.
chr1	173800738	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:34:74:0.054:2	./.	./.
chr1	173814381	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,5:31:193:0.026:2
chr1	173823011	rs149660059	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,71:32:127:0.559:2	./.	./.
chr1	173839907	rs36119794	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:28,21:31:49:0.429:2	0/1:11,9:31:20:0.450:2	./.	./.	./.	./.	./.	0/1:32,25:30:57:0.439:2	./.	./.	./.
chr1	173855055	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,3:33:53:0.057:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	173855208	rs16846520	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,36:29:56:0.643:2	./.	0/1:26,21:30:47:0.447:2	./.	./.
chr1	173878832	rs5878	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,37:33:78:0.474:2	0/1:21,15:32:36:0.417:2	0/1:8,6:33:14:0.429:2	0/1:56,46:33:102:0.451:2	0/1:70,42:32:112:0.375:2	0/1:1,75:33:76:0.987:2	0/1:112,4:32:116:0.034:2	0/1:80,45:32:125:0.360:2	./.	./.	./.
chr1	173878862	rs5877	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,35:32:83:0.422:2	0/1:23,22:32:45:0.489:2	0/1:7,7:31:14:0.500:2	0/1:63,53:32:116:0.457:2	0/1:79,53:32:132:0.402:2	0/1:2,78:32:80:0.975:2	./.	0/1:87,53:32:140:0.379:2	./.	./.	./.
chr1	173915951	rs139674996	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,21:32:52:0.404:2
chr1	174516999	rs41266050	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,46:31:82:0.561:2	./.	0/1:63,38:29:102:0.376:2	./.	0/1:40,43:31:83:0.518:2	0/1:40,50:32:90:0.556:2	./.	./.
chr1	174846737	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:32:90:0.044:2	./.	./.	./.	./.	./.
chr1	174959108	rs41266060	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:12,11:33:23:0.478:2	0/1:11,17:32:28:0.607:2	./.	./.	./.	./.	./.	./.	./.	0/1:17,9:32:26:0.346:2	./.
chr1	174973951	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:33:198:0.025:2	./.	./.	./.
chr1	174975902	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:33:123:0.033:2	./.	./.	./.	./.
chr1	174975946	rs147412966	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:31:93:0.043:2	./.	./.	./.	./.
chr1	174987673	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:169,4:33:173:0.023:2	./.	./.	./.	./.	./.	./.
chr1	175046789	rs2072032	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:29:79:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,13:29:13:1.00:2	0/1:85,59:30:144:0.410:2	0/1:85,69:30:154:0.448:2	0/1:1,139:30:140:0.993:2	0/1:103,69:29:172:0.401:2	0/1:104,79:30:183:0.432:2	0/1:50,50:30:100:0.500:2	0/1:46,42:30:88:0.477:2	0/1:76,55:29:131:0.420:2
chr1	175046826	rs34171717	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,46:29:118:0.390:2	./.	./.
chr1	175046835	rs41266080	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,96:31:171:0.561:2	./.	./.	./.	./.	./.	./.
chr1	175049379	rs16847812	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,35:31:85:0.412:2	./.	./.	0/1:25,29:30:54:0.537:2
chr1	175049405	rs61742080	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:31:14:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	175054548	rs1573758	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,5:30:5:1.00:2	0/1:16,44:29:60:0.733:2	0/1:33,29:31:62:0.468:2	0/1:0,57:29:57:1.00:2	0/1:51,30:30:81:0.370:2	0/1:39,40:29:79:0.506:2	0/1:40,41:32:81:0.506:2	0/1:31,30:31:61:0.492:2	0/1:25,40:30:65:0.615:2
chr1	175086276	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,3:34:42:0.071:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	175087729	rs6696455	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,28:31:71:0.394:2	0/1:25,26:30:51:0.510:2	0/1:0,8:30:8:1.00:2	0/1:52,31:30:84:0.373:2	0/1:48,20:31:69:0.294:2	0/1:0,46:29:46:1.00:2	0/1:33,16:31:49:0.327:2	0/1:69,44:30:113:0.389:2	0/1:42,32:31:74:0.432:2	./.	0/1:53,32:29:85:0.376:2
chr1	175087815	rs116355400	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,72:32:146:0.493:2	./.	./.	./.
chr1	175087884	rs2269654	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,67:30:147:0.456:2	./.	./.	0/1:54,38:30:94:0.413:2
chr1	175087885	rs6694078	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,67:30:148:0.453:2	./.	./.	0/1:54,42:29:96:0.438:2
chr1	175092674	rs2285215	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:62,41:33:103:0.398:2	0/1:36,27:32:63:0.429:2	0/1:0,16:32:16:1.00:2	./.	0/1:0,149:32:149:1.00:2	0/1:0,131:32:131:1.00:2	0/1:1,133:32:134:0.993:2	0/1:74,80:32:154:0.519:2	0/1:94,47:32:141:0.333:2	0/1:0,109:33:109:1.00:2	0/1:73,42:32:115:0.365:2
chr1	175092707	rs10798333	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:59,40:32:99:0.404:2	0/1:40,25:31:65:0.385:2	0/1:4,4:32:8:0.500:2	./.	0/1:101,47:31:148:0.318:2	0/1:75,54:31:130:0.419:2	0/1:4,124:31:128:0.969:2	0/1:78,83:31:161:0.516:2	0/1:92,50:33:142:0.352:2	0/1:0,108:31:108:1.00:2	0/1:62,42:31:104:0.404:2
chr1	175092734	rs148291406	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,6:32:143:0.042:2	./.	./.
chr1	175097864	rs12022593	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,74:32:75:0.987:2	./.	./.	./.	0/1:47,43:33:90:0.478:2	0/1:31,45:33:76:0.592:2	./.	0/1:30,41:32:71:0.577:2
chr1	175105996	rs2072036	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,25:31:49:0.510:2	./.	./.	./.	./.	0/1:33,23:33:56:0.411:2	./.	./.
chr1	175113578	rs10912897	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,113:31:113:1.00:2	0/1:0,64:30:64:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,177:31:177:1.00:2	0/1:0,128:30:128:1.00:2	0/1:1,115:30:116:0.991:2	0/1:0,155:30:156:1.00:2	0/1:0,146:30:146:1.00:2	0/1:0,150:31:150:1.00:2	0/1:1,101:30:102:0.990:2	0/1:0,126:30:126:1.00:2
chr1	175113623	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:32:137:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	175116071	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,10:17:66:0.152:2	./.	./.	./.	./.	./.	./.	./.
chr1	175129932	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:42,4:33:46:0.087:2	./.	./.	0/1:51,6:28:58:0.105:2	./.	./.	./.	./.	./.	./.	./.
chr1	175129933	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,5:32:38:0.132:2	0/1:57,4:33:61:0.066:2	./.	./.	./.	./.	0/1:59,6:28:65:0.092:2
chr1	175129946	rs2072035	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:32:4:0.750:2	0/1:26,13:32:39:0.333:2	0/1:25,7:32:32:0.219:2	0/1:13,31:31:44:0.705:2	0/1:15,3:32:18:0.167:2	0/1:37,5:31:42:0.119:2	0/1:0,58:32:58:1.00:2	0/1:11,8:32:19:0.421:2	0/1:27,15:32:42:0.357:2
chr1	175129955	rs3208835	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,18:31:46:0.409:2	0/1:8,6:32:14:0.429:2	./.	0/1:1,29:31:30:0.967:2	0/1:0,29:30:29:1.00:2	0/1:28,16:31:44:0.364:2	0/1:1,22:31:23:0.957:2	0/1:29,13:30:42:0.310:2	./.	0/1:0,17:31:17:1.00:2	0/1:0,32:31:32:1.00:2
chr1	175130074	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,20:12:155:0.129:2	./.	./.	./.	./.	./.
chr1	175130204	rs1057239	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,28:33:77:0.364:2	0/1:26,21:32:47:0.447:2	./.	0/1:0,93:33:93:1.00:2	0/1:0,76:32:76:1.00:2	0/1:55,59:31:114:0.518:2	0/1:5,78:32:83:0.940:2	0/1:39,39:33:78:0.500:2	./.	0/1:0,75:32:75:1.00:2	0/1:0,92:33:92:1.00:2
chr1	175130276	rs1135289	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:31:25:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,25:32:25:1.00:2
chr1	175299301	rs2027867	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,27:32:48:0.563:2	0/1:20,16:33:36:0.444:2	0/1:0,6:33:6:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,52:31:52:1.00:2	0/1:26,30:32:56:0.536:2	0/1:0,72:33:72:1.00:2	0/1:48,23:32:71:0.324:2	0/1:0,65:33:65:1.00:2	0/1:18,30:33:48:0.625:2	0/1:26,28:33:54:0.519:2
chr1	175324651	rs2228359	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,26:26:70:0.371:2	0/1:19,11:27:30:0.367:2	0/1:0,8:25:8:1.00:2	0/1:0,53:27:53:1.00:2	0/1:0,44:27:44:1.00:2	0/1:29,24:28:53:0.453:2	0/1:0,57:26:57:1.00:2	0/1:40,37:28:77:0.481:2	0/1:0,66:27:66:1.00:2	0/1:27,23:28:50:0.460:2	0/1:0,66:25:66:1.00:2
chr1	175324711	rs61731115	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,9:31:16:0.563:2	0/1:62,43:31:105:0.410:2	./.	./.	./.	./.	0/1:75,50:32:125:0.400:2	./.	./.
chr1	175335234	rs1385541	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:162,4:31:166:0.024:2	./.	./.	./.	./.	./.	./.	0/1:3,142:33:145:0.979:2
chr1	175348723	rs859427	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:32:60:1.00:2	0/1:0,30:33:30:1.00:2	0/1:2,4:31:6:0.667:2	0/1:48,32:31:80:0.400:2	0/1:0,57:32:57:1.00:2	0/1:0,80:32:80:1.00:2	0/1:38,30:32:68:0.441:2	0/1:0,98:32:98:1.00:2	0/1:46,34:32:80:0.425:2	0/1:1,59:32:60:0.983:2	./.
chr1	175355391	rs859437	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:31:17:1.00:2	0/1:0,8:31:8:1.00:2	./.	0/1:0,23:31:23:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,20:29:20:1.00:2	0/1:12,12:31:24:0.500:2	0/1:0,22:30:22:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,26:29:26:1.00:2	0/1:19,13:30:32:0.406:2
chr1	175375469	rs2239819	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:96,95:31:191:0.497:2	0/1:68,56:30:124:0.452:2	./.	0/1:98,95:31:193:0.492:2	0/1:4,187:31:191:0.979:2	./.	./.	0/1:101,90:31:191:0.471:2	./.	0/1:110,86:31:196:0.439:2	./.
chr1	175375635	rs2239818	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,12:31:36:0.333:2	./.	./.	0/1:92,91:31:183:0.497:2	0/1:114,76:31:190:0.400:2	./.	0/1:113,79:32:192:0.411:2	./.	./.
chr1	175375683	rs859399	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,140:28:140:1.00:2	0/1:0,111:28:111:1.00:2	0/1:25,11:28:36:0.306:2	0/1:102,84:29:186:0.452:2	0/1:2,168:28:170:0.988:2	0/1:1,168:29:169:0.994:2	0/1:97,86:29:183:0.470:2	0/1:103,86:29:189:0.455:2	0/1:95,79:30:174:0.454:2	0/1:0,177:29:177:1.00:2	./.
chr1	175375802	rs859398	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:28:68:1.00:2	0/1:0,49:27:49:1.00:2	0/1:12,6:29:18:0.333:2	0/1:60,41:28:101:0.406:2	0/1:0,114:28:114:1.00:2	0/1:0,96:28:96:1.00:2	0/1:71,61:28:132:0.462:2	0/1:73,61:28:134:0.455:2	0/1:56,35:29:91:0.385:2	0/1:0,64:28:64:1.00:2	./.
chr1	176118169	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	176118219	rs3748618	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,23:32:23:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,2:30:2:1.00:2	./.	0/1:19,10:31:29:0.345:2	0/1:28,13:31:41:0.317:2	0/1:2,18:32:20:0.900:2	0/1:19,16:32:35:0.457:2	./.	./.	0/1:43,33:32:76:0.434:2
chr1	176133011	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:159,5:33:164:0.030:2	0/1:167,5:32:172:0.029:2	0/1:136,10:31:147:0.068:2	./.	0/1:147,11:32:158:0.070:2	./.	0/1:129,12:31:141:0.085:2	./.
chr1	176133020	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:136,5:34:141:0.035:2	0/1:154,5:33:159:0.031:2	0/1:114,10:33:124:0.081:2	./.	0/1:132,12:31:144:0.083:2	./.	0/1:109,12:33:121:0.099:2	./.
chr1	176659463	rs10913241	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,21:31:56:0.375:2	./.	0/1:33,28:29:61:0.459:2	0/1:34,34:29:68:0.500:2	0/1:29,39:29:68:0.574:2	0/1:29,16:32:45:0.356:2	./.	0/1:21,29:31:50:0.580:2
chr1	176664886	rs138677844	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,18:31:49:0.367:2	./.
chr1	176809368	rs12118034	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:31,36:32:67:0.537:2	0/1:17,21:32:38:0.553:2	./.	./.	0/1:57,39:31:96:0.406:2	0/1:39,31:32:70:0.443:2	0/1:61,28:32:89:0.315:2	./.	0/1:56,38:32:94:0.404:2	./.	./.
chr1	176833497	rs12118933	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:30:8:0.750:2	./.	./.	./.	./.	./.	./.	0/1:29,21:29:51:0.420:2	./.
chr1	176863836	rs2281180	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:32:62:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,54:32:54:1.00:2	0/1:1,74:32:75:0.987:2	0/1:0,73:33:73:1.00:2	0/1:1,64:32:65:0.985:2	0/1:46,34:32:80:0.425:2	0/1:0,64:33:64:1.00:2	0/1:0,43:33:43:1.00:2	0/1:0,44:33:44:1.00:2
chr1	176863842	rs6680908	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:31:12:0.417:2	./.	./.	./.	./.	./.	./.	0/1:28,16:32:44:0.364:2	./.
chr1	176863867	rs2228956	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:29:58:1.00:2	0/1:0,42:30:42:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,64:30:64:1.00:2	0/1:1,81:29:82:0.988:2	0/1:0,68:30:68:1.00:2	0/1:0,80:30:80:1.00:2	0/1:52,43:29:95:0.453:2	0/1:0,78:31:79:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,65:30:65:1.00:2
chr1	176863906	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:31:85:0.047:2	./.	./.	./.	./.	./.
chr1	176918333	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,4:30:56:0.071:2	./.	./.	./.	./.	./.	./.
chr1	176992553	rs172917	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:32,52:29:84:0.619:2	0/1:15,23:29:38:0.605:2	./.	./.	0/1:60,41:29:101:0.406:2	0/1:0,82:29:83:1.00:2	./.	0/1:69,56:29:125:0.448:2	0/1:80,40:29:120:0.333:2	0/1:0,63:28:64:1.00:2	0/1:43,40:27:83:0.482:2
chr1	176992676	rs10798496	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,31:31:45:0.689:2	0/1:23,16:31:39:0.410:2	./.	./.	0/1:52,50:31:102:0.490:2	0/1:0,60:30:60:1.00:2	0/1:0,108:31:108:1.00:2	./.	0/1:38,37:32:75:0.493:2	0/1:0,47:31:47:1.00:2	0/1:39,28:31:67:0.418:2
chr1	177001896	rs2076069	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,12:31:30:0.400:2	./.	./.	./.
chr1	177247854	rs3176443	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,47:28:48:0.979:2	0/1:0,46:29:46:1.00:2	0/1:7,6:28:13:0.462:2	0/1:40,44:29:84:0.524:2	./.	0/1:32,35:29:67:0.522:2	./.	./.	./.	./.	./.
chr1	177250084	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,14:11:76:0.184:2	./.	./.	./.	./.
chr1	177901619	rs7531399	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,6:30:15:0.400:2	0/1:14,20:30:34:0.588:2	./.	0/1:11,18:29:29:0.621:2	0/1:17,10:30:27:0.370:2	./.	./.
chr1	177901655	rs3748792	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,11:30:27:0.407:2	0/1:17,18:30:35:0.514:2	./.	0/1:17,21:29:38:0.553:2	0/1:24,13:29:37:0.351:2	./.	./.
chr1	177901658	rs7554597	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,11:32:29:0.379:2	0/1:18,18:31:36:0.500:2	./.	0/1:16,21:31:37:0.568:2	0/1:25,13:32:38:0.342:2	./.	./.
chr1	177901713	rs522367	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:27,22:32:49:0.449:2	0/1:13,12:32:25:0.480:2	./.	./.	0/1:33,19:32:52:0.365:2	0/1:30,20:30:50:0.400:2	./.	0/1:23,28:33:51:0.549:2	0/1:0,48:33:48:1.00:2	./.	0/1:33,21:31:54:0.389:2
chr1	177902387	rs61745560	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,26:31:56:0.464:2	0/1:34,22:30:56:0.393:2	./.	0/1:31,50:31:81:0.617:2	0/1:23,38:33:61:0.623:2	./.	./.
chr1	177902725	rs3813649	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,23:31:64:0.359:2	0/1:57,34:31:91:0.374:2	./.	0/1:56,32:30:88:0.364:2	0/1:45,47:31:92:0.511:2	./.	./.
chr1	177902753	rs591120	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:30,22:32:52:0.423:2	0/1:13,16:32:29:0.552:2	./.	./.	0/1:30,16:32:46:0.348:2	0/1:41,28:33:70:0.406:2	./.	0/1:39,23:32:62:0.371:2	0/1:0,60:33:60:1.00:2	./.	0/1:38,33:32:71:0.465:2
chr1	177905469	rs7522194	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,88:31:185:0.476:2	0/1:1,178:30:179:0.994:2	./.	./.	0/1:86,93:32:179:0.520:2	./.	./.
chr1	177908852	rs943762	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,8:33:16:0.500:2	./.	./.	./.	0/1:67,51:32:118:0.432:2	0/1:90,61:32:151:0.404:2	./.	0/1:63,60:32:123:0.488:2	./.
chr1	177917640	rs144118841	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:30:8:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	177917686	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,4:32:34:0.118:2	./.	./.	./.	./.	./.	./.	./.
chr1	177923440	rs12129817	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,20:33:69:0.290:2	0/1:18,19:32:37:0.514:2	./.	0/1:0,84:32:84:1.00:2	0/1:68,50:32:118:0.424:2	./.	0/1:79,51:32:130:0.392:2	./.	./.	0/1:29,41:32:70:0.586:2	0/1:34,41:31:75:0.547:2
chr1	177929521	rs35891059	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:32:15:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	177929554	rs10913472	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,60:31:132:0.455:2	0/1:55,26:31:81:0.321:2	0/1:6,6:31:12:0.500:2	0/1:0,85:30:86:1.00:2	0/1:34,30:28:64:0.469:2	0/1:60,45:30:105:0.429:2	0/1:2,55:30:57:0.965:2	0/1:4,77:30:81:0.951:2	0/1:80,52:31:132:0.394:2	0/1:0,90:31:90:1.00:2	0/1:0,115:31:115:1.00:2
chr1	177929940	rs7413442	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,74:31:171:0.433:2	0/1:59,47:32:106:0.443:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	177929987	rs12040910	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,135:29:135:1.00:2	0/1:0,62:27:62:1.00:2	0/1:0,21:29:21:1.00:2	0/1:0,138:29:138:1.00:2	0/1:75,74:28:149:0.497:2	0/1:66,78:28:144:0.542:2	0/1:2,185:29:187:0.989:2	0/1:3,159:29:162:0.981:2	0/1:93,63:30:156:0.404:2	0/1:0,133:29:133:1.00:2	0/1:0,129:29:129:1.00:2
chr1	177935050	rs1889981	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,26:32:44:0.591:2	./.	./.	0/1:22,13:32:35:0.371:2	0/1:0,48:32:48:1.00:2	0/1:26,18:31:44:0.409:2	./.	0/1:26,29:31:55:0.527:2
chr1	177937009	rs35959058	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:32:15:0.533:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	178063756	rs73049352	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,32:32:80:0.400:2	0/1:28,19:33:47:0.404:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	178412192	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:33:134:0.030:2	./.	./.	./.
chr1	178483231	rs10913563	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,50:31:101:0.495:2	0/1:70,52:31:122:0.426:2	0/1:45,54:30:99:0.545:2	0/1:89,50:32:139:0.360:2	0/1:97,71:31:169:0.423:2	0/1:65,77:32:143:0.542:2	0/1:61,65:30:126:0.516:2	0/1:76,61:32:137:0.445:2
chr1	178489978	rs3813636	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,46:29:103:0.447:2	0/1:42,35:30:77:0.455:2	0/1:56,49:30:105:0.467:2	0/1:57,46:30:103:0.447:2	0/1:84,60:29:144:0.417:2	0/1:57,53:29:110:0.482:2	0/1:52,54:29:106:0.509:2	0/1:57,40:29:97:0.412:2
chr1	178492447	rs7527160	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:33:18:0.500:2	./.	0/1:17,3:32:20:0.150:2	./.	0/1:0,15:32:15:1.00:2	0/1:4,5:33:9:0.556:2	0/1:10,5:34:15:0.333:2	0/1:18,9:33:27:0.333:2
chr1	178514622	rs12568310	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,45:32:72:0.625:2	0/1:19,16:32:35:0.457:2	0/1:27,22:31:49:0.449:2	0/1:10,13:30:23:0.565:2	0/1:22,29:32:51:0.569:2	0/1:26,20:34:46:0.435:2	0/1:11,19:33:30:0.633:2	0/1:31,25:33:57:0.446:2
chr1	178745914	rs61747558	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,37:32:109:0.339:2	./.	./.	./.	./.
chr1	178745947	rs6665037	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,41:30:84:0.488:2	./.	./.	./.	./.	./.	./.	./.
chr1	178858759	rs3753534	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.	0/1:19,7:31:26:0.269:2	./.	./.	./.	./.	./.	0/1:21,23:32:45:0.523:2
chr1	179052080	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:27:12:0.250:2	./.	./.	./.	0/1:67,10:23:77:0.130:2	./.	./.	./.	./.
chr1	179055020	rs2296376	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,50:31:100:0.500:2	./.	./.	./.
chr1	179076986	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:32:184:0.022:2	./.	./.	./.	./.
chr1	179078523	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:32:13:0.308:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	179084080	rs2274230	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,79:31:185:0.427:2	./.	./.
chr1	179095671	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,7:30:197:0.036:2	./.	./.	./.
chr1	179112145	rs1318056	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:48,29:33:77:0.377:2	0/1:28,27:32:55:0.491:2	0/1:9,8:31:17:0.471:2	./.	0/1:48,50:32:98:0.510:2	0/1:62,50:32:112:0.446:2	0/1:56,52:32:108:0.481:2	0/1:62,60:32:122:0.492:2	./.	0/1:60,52:33:112:0.464:2	0/1:80,37:32:117:0.316:2
chr1	179307047	rs10913726	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,19:31:19:1.00:2	0/1:28,17:31:45:0.378:2	0/1:7,4:31:11:0.364:2	0/1:0,21:31:21:1.00:2	./.	0/1:1,22:32:23:0.957:2	0/1:30,25:32:55:0.455:2
chr1	179310262	rs11576517	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:79,76:33:155:0.490:2	0/1:41,42:33:83:0.506:2	./.	./.	./.	./.	0/1:63,47:32:110:0.427:2	./.	./.	./.	./.
chr1	179310439	rs7547733	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,32:32:72:0.444:2	0/1:15,13:32:28:0.464:2	0/1:3,4:32:7:0.571:2	0/1:22,34:32:56:0.607:2	./.	./.	./.	./.	0/1:40,17:33:57:0.298:2	./.	0/1:39,28:32:67:0.418:2
chr1	179311323	rs144255785	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,35:32:64:0.547:2	./.	./.	./.	./.
chr1	179312752	rs10753191	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,25:32:56:0.446:2	./.	./.	./.	./.	./.	./.	./.
chr1	179319541	rs3753526	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,78:32:172:0.453:2	./.	./.	./.	./.	./.	./.	./.
chr1	179320578	rs13306731	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,62:31:138:0.449:2	./.	./.	./.	./.	./.	./.	./.
chr1	179347832	rs10798674	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:33:49:1.00:2	0/1:0,34:33:34:1.00:2	0/1:6,8:34:14:0.571:2	0/1:0,64:32:64:1.00:2	./.	0/1:42,32:32:74:0.432:2	0/1:43,40:32:83:0.482:2	./.	0/1:62,34:34:96:0.354:2	./.	0/1:46,37:33:83:0.446:2
chr1	179414105	rs11577579	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	0/1:0,14:33:14:1.00:2	./.	0/1:6,12:34:18:0.667:2	0/1:2,9:32:11:0.818:2	./.	0/1:0,19:32:19:1.00:2	0/1:25,26:32:51:0.510:2
chr1	179452275	rs10494520	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,31:32:77:0.403:2	./.	./.	./.	./.	./.	0/1:39,17:33:56:0.304:2	./.
chr1	179504043	rs10588433	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,91:33:91:1.00:2	0/1:0,46:33:46:1.00:2	./.	0/1:61,42:34:103:0.408:2	./.	0/1:49,41:32:90:0.456:2	0/1:40,20:33:60:0.333:2	./.	0/1:46,35:34:81:0.432:2	./.	0/1:50,40:34:90:0.444:2
chr1	179520422	rs3818587	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,75:33:167:0.449:2	./.	./.
chr1	179520506	rs1410592	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,40:32:87:0.460:2	0/1:31,22:33:53:0.415:2	0/1:0,16:32:16:1.00:2	0/1:65,49:33:115:0.430:2	0/1:2,112:32:114:0.982:2	./.	0/1:1,117:32:118:0.992:2	0/1:1,119:32:120:0.992:2	0/1:72,71:33:143:0.497:2	0/1:56,37:33:93:0.398:2	0/1:0,120:33:120:1.00:2
chr1	179521731	rs115778946	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,37:29:59:0.627:2	0/1:19,8:29:27:0.296:2	0/1:7,4:29:11:0.364:2	0/1:33,21:30:55:0.389:2	./.	./.	./.	./.	./.	./.	0/1:21,28:29:49:0.571:2
chr1	179526214	rs61747728	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,50:32:120:0.420:2	./.	./.	0/1:107,87:32:194:0.448:2	./.	0/1:86,55:32:143:0.390:2	./.
chr1	179533915	rs3738423	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,24:33:50:0.480:2	./.	./.
chr1	179544898	rs1079292	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	0/1:0,2:34:2:1.00:2	./.	0/1:0,2:36:2:1.00:2	./.	./.
chr1	179562740	rs61310274	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:85,95:30:180:0.528:2	0/1:88,88:30:176:0.500:2	0/1:18,18:30:36:0.500:2	0/1:98,99:31:197:0.503:2	./.	./.	0/1:91,102:30:193:0.528:2	./.	0/1:0,180:31:181:1.00:2	./.	0/1:93,93:30:187:0.500:2
chr1	179604864	rs4628468	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,43:32:43:1.00:2	0/1:0,10:32:10:1.00:2	./.	0/1:0,46:32:46:1.00:2	./.	0/1:1,26:31:27:0.963:2	0/1:17,17:32:34:0.500:2	./.	0/1:2,37:32:39:0.949:2	0/1:15,14:31:29:0.483:2	0/1:26,22:32:48:0.458:2
chr1	179609549	rs147735255	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,70:33:153:0.458:2	./.	./.	./.	./.
chr1	179609589	rs16854429	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:72,71:32:143:0.497:2	0/1:38,36:32:74:0.486:2	./.	0/1:98,74:32:172:0.430:2	./.	0/1:81,61:31:142:0.430:2	./.	./.	./.	0/1:69,49:32:118:0.415:2	./.
chr1	179620047	rs199784694	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:33:175:0.023:2	./.
chr1	179620175	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:32:114:0.035:2	./.	./.	./.	./.
chr1	179631242	rs35448215	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,31:30:32:0.969:2	./.	0/1:39,8:29:47:0.170:2	0/1:0,27:30:27:1.00:2	./.	0/1:11,8:31:19:0.421:2	0/1:24,19:31:43:0.442:2
chr1	179783095	rs202244671	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,5:28:50:0.100:2	0/1:26,6:29:32:0.188:2	0/1:33,8:29:41:0.195:2	0/1:30,5:29:35:0.143:2	0/1:46,6:28:52:0.115:2	0/1:28,4:32:32:0.125:2	0/1:19,4:31:23:0.174:2	0/1:42,8:31:50:0.160:2
chr1	179852074	rs1281378	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,54:28:54:1.00:2	0/1:0,23:28:23:1.00:2	0/1:0,6:30:6:1.00:2	./.	0/1:47,35:28:82:0.427:2	0/1:1,82:27:83:0.988:2	0/1:54,42:28:96:0.438:2	0/1:52,37:28:89:0.416:2	./.	0/1:32,27:27:59:0.458:2	0/1:1,37:27:38:0.974:2
chr1	179858444	rs2245425	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,54:32:56:0.964:2	0/1:0,33:31:33:1.00:2	0/1:0,6:31:6:1.00:2	./.	0/1:9,17:32:26:0.654:2	0/1:0,58:31:58:1.00:2	0/1:24,20:31:44:0.455:2	0/1:0,56:32:56:1.00:2	./.	0/1:32,27:32:59:0.458:2	0/1:2,68:32:70:0.971:2
chr1	179876988	rs609521	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,95:30:95:1.00:2	0/1:0,67:30:67:1.00:2	0/1:0,18:29:18:1.00:2	./.	0/1:58,17:30:75:0.227:2	0/1:1,107:30:108:0.991:2	0/1:46,56:30:102:0.549:2	0/1:80,62:30:142:0.437:2	./.	0/1:68,61:30:129:0.473:2	0/1:1,96:31:98:0.990:2
chr1	179877780	rs17279712	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,56:32:58:0.966:2	./.	./.	./.	./.	./.	0/1:38,32:33:70:0.457:2	./.
chr1	179883206	rs17370826	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,119:30:125:0.960:2	./.	./.	./.	./.	./.	0/1:58,47:31:105:0.448:2	./.
chr1	179887125	rs627897	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:33:77:1.00:2	0/1:1,48:33:49:0.980:2	0/1:0,9:32:9:1.00:2	0/1:0,92:32:92:1.00:2	0/1:43,32:31:75:0.427:2	0/1:0,79:31:79:1.00:2	0/1:1,81:33:82:0.988:2	0/1:0,91:33:91:1.00:2	0/1:0,104:33:104:1.00:2	0/1:0,81:33:81:1.00:2	0/1:0,84:33:84:1.00:2
chr1	179965698	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:32:49:0.082:2	./.	./.	./.
chr1	179972337	rs17371159	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,22:33:52:0.423:2	0/1:31,28:32:59:0.475:2	0/1:48,38:34:86:0.442:2	./.	./.
chr1	179989742	rs2477120	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:32:62:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,110:32:110:1.00:2	0/1:32,31:31:63:0.492:2	0/1:0,101:32:101:1.00:2	0/1:31,49:33:80:0.613:2	0/1:51,57:32:108:0.528:2	./.	0/1:0,82:32:82:1.00:2	0/1:1,107:33:108:0.991:2
chr1	180000542	rs12125245	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,36:32:97:0.371:2	0/1:83,72:32:155:0.465:2	0/1:83,66:32:149:0.443:2	./.	./.
chr1	180010911	rs16855164	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:90,86:30:176:0.489:2	./.	./.	./.	./.	./.	./.
chr1	180023038	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:33:84:0.048:2	./.	./.	./.
chr1	180053251	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:121,4:30:125:0.032:2	./.	./.	./.	./.	./.	./.
chr1	180064738	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,50:32:93:0.538:2	./.	./.	./.
chr1	180080290	rs12126496	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,83:31:152:0.546:2	./.	0/1:84,69:32:153:0.451:2	./.	./.
chr1	180144485	rs10913939	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,86:32:156:0.551:2	./.	0/1:97,70:32:167:0.419:2	0/1:75,104:33:179:0.581:2	./.	./.	./.
chr1	180144518	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:33:111:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	180145088	rs2298206	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:28:85:1.00:2	0/1:0,51:27:51:1.00:2	0/1:0,14:29:14:1.00:2	0/1:1,137:28:138:0.993:2	0/1:85,68:28:153:0.444:2	0/1:0,132:29:132:1.00:2	0/1:1,174:28:175:0.994:2	0/1:1,141:28:142:0.993:2	0/1:0,121:29:121:1.00:2	0/1:0,79:28:79:1.00:2	0/1:0,88:27:88:1.00:2
chr1	180148012	rs17855475	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,22:32:66:0.333:2	./.	0/1:29,45:32:74:0.608:2	0/1:53,64:33:117:0.547:2	./.	./.	./.
chr1	180151432	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:32:176:0.023:2
chr1	180159654	rs7521513	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,25:29:71:0.352:2	./.	0/1:70,41:31:111:0.369:2	0/1:70,30:30:100:0.300:2	./.	./.	./.
chr1	180159657	rs1050154	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,25:30:72:0.347:2	./.	0/1:66,40:31:106:0.377:2	0/1:66,30:31:96:0.313:2	./.	./.	./.
chr1	180166152	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,4:30:62:0.065:2	./.	./.	./.	./.	./.	./.	./.
chr1	180243524	rs7536561	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,48:33:49:0.980:2	0/1:2,34:32:36:0.944:2	./.	./.	0/1:3,88:32:91:0.967:2	0/1:0,69:32:69:1.00:2	./.	0/1:55,51:32:106:0.481:2	0/1:36,37:33:73:0.507:2	0/1:40,37:32:77:0.481:2	./.
chr1	180832957	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,39:33:56:0.696:2	./.
chr1	180885430	rs10732273	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:31:16:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,22:30:22:1.00:2	0/1:1,37:31:38:0.974:2	0/1:0,34:31:34:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,19:31:19:1.00:2	0/1:2,23:31:25:0.920:2
chr1	180886216	rs77695365	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,55:31:102:0.539:2	./.
chr1	180897569	rs3747958	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,23:33:48:0.479:2	0/1:24,19:32:43:0.442:2	0/1:2,3:26:5:0.600:2	0/1:34,46:33:81:0.575:2	0/1:33,36:32:69:0.522:2	0/1:44,29:33:73:0.397:2	./.	0/1:35,51:32:86:0.593:2	0/1:29,24:32:53:0.453:2	./.	0/1:13,23:33:36:0.639:2
chr1	180904787	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,4:33:25:0.160:2
chr1	180905263	rs17302207	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,17:31:34:0.500:2	./.	./.	./.	./.	./.	./.
chr1	180905352	rs3795505	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:31:57:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,12:30:12:1.00:2	0/1:54,37:29:91:0.407:2	./.	0/1:43,33:29:77:0.434:2	0/1:53,30:31:83:0.361:2	0/1:2,83:30:85:0.976:2	0/1:53,44:30:97:0.454:2	0/1:29,37:28:66:0.561:2	0/1:0,74:30:74:1.00:2
chr1	180905448	rs3795504	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:30:45:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,4:31:4:1.00:2	0/1:58,31:30:89:0.348:2	./.	0/1:32,29:31:61:0.475:2	0/1:51,26:31:77:0.338:2	0/1:1,57:31:58:0.983:2	0/1:30,16:31:46:0.348:2	0/1:37,37:32:74:0.500:2	0/1:1,58:31:59:0.983:2
chr1	180905694	rs3795503	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,21:27:54:0.389:2	./.	0/1:25,21:28:46:0.457:2	./.	./.	./.	0/1:13,24:30:37:0.649:2	./.
chr1	180910200	rs201945338	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,22:29:52:0.423:2
chr1	180913597	rs2331995	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,2:30:2:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,33:30:33:1.00:2
chr1	180953853	rs3747957	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,26:29:62:0.419:2	0/1:20,17:28:37:0.459:2	./.	0/1:1,97:30:98:0.990:2	0/1:46,41:28:87:0.471:2	0/1:63,42:30:105:0.400:2	0/1:0,62:30:62:1.00:2	0/1:55,38:29:93:0.409:2	0/1:63,45:31:108:0.417:2	0/1:0,85:29:85:1.00:2	0/1:56,56:30:112:0.500:2
chr1	180962526	rs34036241	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,34:32:79:0.430:2	0/1:46,48:32:94:0.511:2	./.	./.	./.
chr1	181018236	rs2236410	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,70:29:151:0.464:2	./.	./.	0/1:83,91:30:174:0.523:2	./.	./.	./.
chr1	181018258	rs3863720	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,32:32:104:0.308:2	./.
chr1	181018356	rs139058145	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,88:32:155:0.568:2	./.	./.
chr1	181021483	rs35223984	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,17:29:44:0.386:2	./.	./.	./.	./.	./.
chr1	181024404	rs3747956	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:118,76:30:194:0.392:2	0/1:108,76:30:184:0.413:2	0/1:114,72:31:186:0.387:2	0/1:0,184:30:184:1.00:2	./.	0/1:114,76:31:190:0.400:2	./.
chr1	181058313	rs3747955	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr1	181058891	rs3747951	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,17:31:44:0.395:2	./.	0/1:15,12:31:27:0.444:2	./.
chr1	181059090	rs141671790	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,4:32:9:0.444:2
chr1	181059893	rs41268464	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,6:32:19:0.316:2	./.	0/1:13,3:30:16:0.188:2	./.
chr1	181548341	rs17443123	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,70:31:154:0.455:2	./.	./.	./.	./.	./.	./.
chr1	181684517	rs35265801	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,32:32:56:0.571:2	./.	./.	./.	./.	./.
chr1	181685172	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,4:31:85:0.047:2	./.	./.	./.	./.	./.	./.
chr1	181701799	rs35737760	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,21:27:43:0.488:2	./.	./.	0/1:28,15:29:43:0.349:2	./.
chr1	181701916	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,28:33:99:0.283:2	./.	./.
chr1	181702616	rs41304253	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,27:31:62:0.435:2	./.
chr1	181706685	rs34488539	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,39:31:95:0.411:2	./.	./.	0/1:65,64:32:129:0.496:2	./.	./.	0/1:41,40:31:81:0.494:2	./.
chr1	181725110	rs4652678	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,22:30:50:0.440:2	0/1:24,25:30:49:0.510:2	./.	0/1:35,19:30:54:0.352:2	0/1:30,32:30:62:0.516:2	./.	0/1:0,48:30:48:1.00:2	0/1:0,57:30:57:1.00:2
chr1	181732586	rs115093623	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,11:30:28:0.393:2	./.	./.	./.	./.	./.	./.
chr1	181735757	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:32:162:0.025:2	./.	./.
chr1	181741301	rs199930	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,89:32:197:0.452:2	./.	0/1:110,86:32:196:0.439:2	0/1:120,75:32:195:0.385:2	./.	0/1:0,172:32:172:1.00:2	0/1:1,171:32:172:0.994:2
chr1	181759638	rs34741608	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,50:28:101:0.495:2	./.	./.	./.	./.	./.	./.	./.
chr1	181759657	rs704326	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:31:65:1.00:2	0/1:3,49:31:52:0.942:2	0/1:7,9:29:16:0.563:2	0/1:55,38:30:93:0.409:2	./.	0/1:0,105:30:105:1.00:2	0/1:59,56:30:115:0.487:2	./.	0/1:0,125:31:125:1.00:2	./.	./.
chr1	182026813	rs12568050	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:31:13:0.308:2	./.	./.	./.	./.	0/1:92,69:32:161:0.429:2	./.	0/1:61,37:33:98:0.378:2	./.
chr1	182027022	rs12564283	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,7:31:17:0.412:2	./.	./.	./.	./.	0/1:100,67:30:167:0.401:2	./.	0/1:60,32:30:92:0.348:2	./.
chr1	182356399	rs1058111	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:32:77:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,8:32:8:1.00:2	0/1:47,39:32:86:0.453:2	./.	./.	0/1:40,41:32:81:0.506:2	./.	0/1:52,47:33:99:0.475:2	0/1:0,85:32:85:1.00:2	0/1:52,61:32:113:0.540:2
chr1	182357823	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:32:174:0.023:2	./.	./.
chr1	182369078	rs6698722	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,99:33:99:1.00:2	0/1:1,51:32:52:0.981:2	0/1:0,10:32:10:1.00:2	0/1:0,122:32:122:1.00:2	0/1:1,128:32:129:0.992:2	0/1:61,56:32:117:0.479:2	0/1:0,132:33:132:1.00:2	0/1:1,125:32:126:0.992:2	0/1:2,125:33:127:0.984:2	0/1:0,131:32:131:1.00:2	0/1:79,54:33:133:0.406:2
chr1	182369233	rs6674281	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:33:69:1.00:2	0/1:2,44:33:46:0.957:2	0/1:0,5:33:5:1.00:2	0/1:37,37:32:74:0.500:2	./.	./.	0/1:36,58:33:94:0.617:2	./.	0/1:45,38:33:83:0.458:2	0/1:0,70:32:70:1.00:2	0/1:42,38:32:80:0.475:2
chr1	182369738	rs7551829	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,3:29:3:1.00:2	./.	0/1:0,3:28:3:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,4:34:4:1.00:2	./.	./.
chr1	182423146	rs41299607	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,21:32:54:0.389:2	./.
chr1	182443462	rs649437	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,15:33:15:1.00:2	0/1:102,77:33:179:0.430:2	0/1:89,60:32:149:0.403:2	0/1:3,160:32:163:0.982:2	./.	0/1:109,81:32:190:0.426:2	./.	./.	0/1:90,86:33:176:0.489:2
chr1	182496829	rs7535533	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,68:33:69:1.00:2	0/1:0,62:32:62:1.00:2	./.	0/1:44,43:32:87:0.494:2	0/1:32,26:32:58:0.448:2	./.	0/1:1,44:33:45:0.978:2	0/1:42,28:32:70:0.400:2	0/1:39,37:33:76:0.487:2	0/1:0,63:31:63:1.00:2	./.
chr1	182509389	rs61749260	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,32:31:91:0.352:2	./.	./.	./.	./.	./.	./.
chr1	182525189	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,33:33:78:0.423:2	./.	./.
chr1	182551334	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:172,4:32:176:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr1	182551337	rs627928	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,138:33:139:0.993:2	0/1:0,99:33:99:1.00:2	0/1:13,12:31:25:0.480:2	0/1:1,159:33:160:0.994:2	./.	./.	0/1:107,68:33:175:0.389:2	0/1:107,66:33:173:0.382:2	./.	0/1:0,99:33:99:1.00:2	0/1:104,80:33:184:0.435:2
chr1	182554557	rs486907	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:90,70:32:161:0.438:2	0/1:44,39:32:83:0.470:2	0/1:12,8:30:20:0.400:2	0/1:7,169:31:176:0.960:2	0/1:158,5:29:163:0.031:2	./.	0/1:92,64:32:156:0.410:2	0/1:115,83:31:198:0.419:2	./.	0/1:108,60:32:168:0.357:2	./.
chr1	182554625	rs149129827	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,88:30:186:0.473:2	./.	./.	./.	./.	./.	./.
chr1	182569626	rs1144566	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:29:88:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,137:29:138:1.00:2	0/1:0,165:29:165:1.00:2	0/1:0,155:29:155:1.00:2	0/1:0,162:30:162:1.00:2	0/1:0,158:29:158:1.00:2	0/1:0,119:29:119:1.00:2	0/1:0,105:29:105:1.00:2	0/1:0,106:28:106:1.00:2
chr1	182573343	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:29:49:0.082:2	./.	./.	./.
chr1	182640851	rs569956	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:110,76:33:186:0.409:2	0/1:81,55:32:136:0.404:2	./.	./.	0/1:118,78:32:196:0.398:2	./.	./.	./.	./.	./.	./.
chr1	182640864	rs680277	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:100,65:32:166:0.394:2	0/1:82,54:32:136:0.397:2	./.	./.	0/1:116,69:31:185:0.373:2	./.	./.	./.	./.	./.	./.
chr1	182781273	rs2225789	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,63:31:145:0.434:2	./.	./.	./.	./.	./.	./.
chr1	182785865	rs1128759	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,16:30:43:0.372:2	./.	./.	./.	./.	./.	./.
chr1	182787920	rs10911141	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,8:30:22:0.364:2	./.	./.	./.	./.	./.	./.
chr1	182787951	rs10911142	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,9:30:29:0.310:2	./.	./.	./.	./.	./.	./.
chr1	182827882	rs73063097	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,21:30:57:0.368:2	./.	./.	./.	./.	./.
chr1	182850727	rs6677840	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,49:32:51:0.961:2	0/1:0,31:32:31:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,47:33:47:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,58:33:58:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,68:34:68:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,79:33:79:1.00:2
chr1	182850772	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,4:31:32:0.125:2	./.
chr1	182852312	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:32:178:0.022:2	./.	./.
chr1	182852702	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:32:101:0.040:2	./.	./.	./.	./.
chr1	182852705	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:30:98:0.041:2	./.	./.	./.	./.
chr1	182852761	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:33:68:0.059:2	./.	./.	./.	./.
chr1	182908446	rs200451412	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,21:31:72:0.292:2	./.	./.	./.	./.	./.
chr1	182920465	rs11555585	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,20:31:36:0.556:2	./.	./.	./.	./.	./.	./.
chr1	182993025	rs10911194	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,28:29:65:0.431:2	0/1:29,19:32:48:0.396:2	0/1:5,3:32:8:0.375:2	0/1:53,48:31:101:0.475:2	0/1:0,81:30:81:1.00:2	0/1:54,54:31:108:0.500:2	0/1:38,45:30:83:0.542:2	0/1:55,38:31:93:0.409:2	0/1:1,75:32:76:0.987:2	0/1:33,13:33:46:0.283:2	./.
chr1	183072590	rs2296288	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,52:30:102:0.510:2	0/1:27,27:27:54:0.500:2	0/1:12,7:30:19:0.368:2	0/1:76,46:29:122:0.377:2	0/1:1,148:30:149:0.993:2	0/1:87,49:29:136:0.360:2	0/1:77,69:30:146:0.473:2	0/1:63,63:30:126:0.500:2	0/1:1,114:31:115:0.991:2	0/1:59,64:29:123:0.520:2	./.
chr1	183072701	rs2296289	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,35:31:79:0.443:2	0/1:38,27:30:65:0.415:2	./.	./.	./.	./.	./.	./.
chr1	183072734	rs115864963	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,31:32:70:0.443:2	./.	./.	./.	./.	./.	./.	./.
chr1	183085755	rs20563	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,71:33:130:0.550:2	0/1:29,26:32:55:0.473:2	0/1:12,10:33:22:0.455:2	0/1:87,95:33:182:0.522:2	0/1:3,175:32:178:0.983:2	0/1:72,91:32:163:0.558:2	0/1:67,85:32:152:0.559:2	0/1:88,112:33:200:0.560:2	0/1:0,194:33:194:1.00:2	0/1:91,77:33:169:0.458:2	./.
chr1	183086757	rs2296292	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,56:29:144:0.389:2	0/1:45,28:29:73:0.384:2	0/1:9,7:29:16:0.438:2	0/1:51,59:30:110:0.536:2	0/1:4,158:29:162:0.975:2	0/1:98,68:30:166:0.410:2	0/1:96,95:30:191:0.497:2	0/1:112,81:30:193:0.420:2	0/1:0,143:30:143:1.00:2	0/1:84,43:29:127:0.339:2	./.
chr1	183093875	rs20557	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,45:30:103:0.437:2	0/1:23,25:30:48:0.521:2	0/1:3,6:30:9:0.667:2	0/1:59,53:29:112:0.473:2	0/1:1,98:30:99:0.990:2	0/1:57,57:29:114:0.500:2	0/1:56,54:30:110:0.491:2	0/1:62,60:30:122:0.492:2	0/1:2,98:31:100:0.980:2	0/1:44,47:30:91:0.516:2	./.
chr1	183094547	rs20558	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,42:31:104:0.404:2	0/1:28,15:30:43:0.349:2	0/1:4,5:30:9:0.556:2	0/1:69,51:31:120:0.425:2	0/1:0,120:30:120:1.00:2	0/1:65,55:30:120:0.458:2	0/1:62,72:30:134:0.537:2	0/1:81,81:30:162:0.500:2	0/1:0,141:31:141:1.00:2	0/1:33,46:31:79:0.582:2	./.
chr1	183096458	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:151,4:32:155:0.026:2	./.	./.	./.	./.	./.	./.
chr1	183096529	rs199739386	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,12:13:95:0.126:2	./.	0/1:110,16:11:126:0.127:2	./.	./.	./.	./.
chr1	183099560	rs20559	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,32:34:66:0.485:2	0/1:22,12:32:34:0.353:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	183099657	rs200305826	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,22:31:42:0.524:2	./.	./.	./.	./.	./.	./.	./.
chr1	183102632	rs34995260	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,36:32:78:0.462:2	./.	./.	./.
chr1	183105534	rs20560	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,74:31:148:0.500:2	0/1:53,48:29:101:0.475:2	0/1:18,14:31:32:0.438:2	0/1:92,102:30:194:0.526:2	0/1:1,149:30:150:0.993:2	0/1:106,91:30:197:0.462:2	0/1:102,92:31:194:0.474:2	0/1:102,92:30:195:0.474:2	0/1:0,186:31:186:1.00:2	0/1:105,67:30:172:0.390:2	./.
chr1	183105705	rs20561	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:37,40:30:77:0.519:2	0/1:19,18:32:37:0.486:2	./.	./.	0/1:0,96:31:96:1.00:2	0/1:45,58:31:103:0.563:2	0/1:63,61:30:124:0.492:2	0/1:46,60:31:106:0.566:2	0/1:0,123:32:123:1.00:2	0/1:25,52:31:77:0.675:2	./.
chr1	183155482	rs684527	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:2,3:33:5:0.600:2	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	./.	./.	./.
chr1	183184616	rs2274980	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,5:33:7:0.714:2	0/1:54,43:32:97:0.443:2	./.	./.	./.	./.	./.	./.	./.
chr1	183184690	rs11586699	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,56:31:97:0.577:2	0/1:0,146:32:146:1.00:2	./.	./.	0/1:69,74:31:143:0.517:2	0/1:60,69:33:129:0.535:2	./.	./.
chr1	183187603	rs1129723	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:30:4:0.750:2	0/1:46,39:30:85:0.459:2	./.	./.	./.	./.	./.	./.	./.
chr1	183191324	rs2296306	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,16:31:30:0.533:2	0/1:91,95:31:186:0.511:2	./.	./.	./.	./.	./.	./.	./.
chr1	183192304	rs1047980	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,7:33:14:0.500:2	0/1:47,48:31:95:0.505:2	./.	./.	./.	./.	./.	./.	./.
chr1	183192386	rs144572936	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,58:30:120:0.483:2	./.	./.	./.	./.	./.
chr1	183201330	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:34:186:0.022:2	./.	./.
chr1	183206573	rs1047981	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,11:32:29:0.379:2	0/1:101,85:32:186:0.457:2	./.	./.	./.	./.	./.	./.	./.
chr1	183255908	rs41314643	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,11:27:25:0.440:2	./.	./.	./.	./.	./.	./.	./.	0/1:77,74:28:151:0.490:2
chr1	183481990	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.	./.
chr1	183486859	rs789169	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:31:76:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,119:30:119:1.00:2	0/1:0,72:30:72:1.00:2	0/1:0,124:30:124:1.00:2	0/1:49,47:31:96:0.490:2	0/1:67,70:30:137:0.511:2	0/1:0,105:31:105:1.00:2	0/1:51,27:31:78:0.346:2	0/1:77,52:32:129:0.403:2
chr1	183495812	rs144712473	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,53:33:76:0.697:2
chr1	183498099	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,4:33:102:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr1	183532580	rs17849502	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,19:32:42:0.452:2	./.	./.
chr1	183542323	rs17849501	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,42:31:87:0.483:2	./.	./.
chr1	183542387	rs2274064	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:34,36:32:70:0.514:2	0/1:27,21:33:48:0.438:2	0/1:5,6:33:11:0.545:2	./.	0/1:69,75:32:144:0.521:2	0/1:4,107:32:111:0.964:2	./.	./.	0/1:72,70:34:142:0.493:2	0/1:76,40:33:116:0.345:2	./.
chr1	183592570	rs17488675	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:31,29:33:60:0.483:2	0/1:18,11:33:29:0.379:2	./.	./.	0/1:31,23:32:54:0.426:2	0/1:36,34:32:70:0.486:2	./.	./.	0/1:26,29:34:55:0.527:2	0/1:12,33:33:45:0.733:2	0/1:43,27:33:70:0.386:2
chr1	183616926	rs1174657	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:86,96:31:182:0.527:2	0/1:66,57:30:123:0.463:2	0/1:7,14:30:21:0.667:2	./.	0/1:79,63:30:142:0.444:2	0/1:88,85:30:173:0.491:2	./.	./.	0/1:112,77:32:189:0.407:2	0/1:93,75:30:168:0.446:2	0/1:98,92:31:190:0.484:2
chr1	183617105	rs1174658	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:101,94:32:195:0.482:2	0/1:94,98:33:193:0.510:2	0/1:11,17:32:28:0.607:2	./.	0/1:92,105:32:197:0.533:2	0/1:88,103:32:191:0.539:2	./.	./.	0/1:108,91:33:199:0.457:2	0/1:95,92:32:187:0.492:2	0/1:94,101:33:195:0.518:2
chr1	183617266	rs17436878	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,74:33:162:0.457:2	./.	0/1:70,53:32:123:0.431:2	0/1:81,74:32:155:0.477:2	./.	0/1:95,77:33:172:0.448:2	0/1:88,69:33:157:0.439:2	./.
chr1	183617457	rs185794943	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,36:33:73:0.493:2	./.	./.	./.	./.	./.	./.	./.
chr1	183849869	rs12140352	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,29:32:74:0.392:2	./.	./.	./.	./.	./.	./.
chr1	183876182	rs11591089	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,17:31:55:0.309:2	./.	0/1:28,28:32:56:0.500:2	0/1:23,20:32:43:0.465:2	0/1:33,24:32:57:0.421:2
chr1	183909717	rs2296713	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,66:32:128:0.516:2	0/1:30,46:32:76:0.605:2	0/1:9,21:32:30:0.700:2	0/1:0,172:32:172:1.00:2	0/1:0,156:32:156:1.00:2	./.	./.	./.	0/1:73,65:33:138:0.471:2	./.	./.
chr1	183947633	rs11579482	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:31:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	184020945	rs2274432	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:30:5:0.600:2	0/1:1,8:28:9:0.889:2	0/1:5,6:32:11:0.545:2	0/1:1,3:32:4:0.750:2	./.
chr1	184023529	rs1046934	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,48:30:84:0.571:2	0/1:0,130:30:130:1.00:2	0/1:66,66:31:132:0.500:2	0/1:63,66:30:129:0.512:2	./.
chr1	184039735	rs56239295	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,10:31:10:1.00:2	./.	./.	./.	./.	./.
chr1	184663537	rs9425343	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,21:33:31:0.677:2	0/1:19,5:32:24:0.208:2	./.	0/1:0,25:32:25:1.00:2	0/1:16,8:32:24:0.333:2	0/1:9,14:32:23:0.609:2	0/1:15,4:34:19:0.211:2	0/1:0,18:32:18:1.00:2	0/1:23,19:33:42:0.452:2	0/1:0,43:32:43:1.00:2	./.
chr1	184663581	rs9425634	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,14:33:19:0.737:2	0/1:16,7:33:23:0.304:2	./.	0/1:0,15:33:15:1.00:2	0/1:9,6:32:15:0.400:2	0/1:12,11:33:23:0.478:2	0/1:13,7:33:20:0.350:2	0/1:0,28:33:28:1.00:2	0/1:17,27:35:44:0.614:2	0/1:0,41:33:41:1.00:2	./.
chr1	184675814	rs1062994	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:58,49:30:107:0.458:2	0/1:54,34:31:88:0.386:2	./.	0/1:3,166:29:169:0.982:2	0/1:94,83:29:177:0.469:2	0/1:96,87:29:183:0.475:2	0/1:110,85:30:196:0.436:2	0/1:0,192:29:192:1.00:2	0/1:100,70:29:170:0.412:2	0/1:3,116:30:119:0.975:2	./.
chr1	184677464	rs3736757	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,47:31:96:0.490:2	0/1:36,32:32:68:0.471:2	./.	0/1:1,123:31:124:0.992:2	0/1:51,52:31:103:0.505:2	0/1:64,54:31:118:0.458:2	0/1:55,46:32:101:0.455:2	0/1:0,100:31:100:1.00:2	0/1:69,57:32:126:0.452:2	0/1:0,83:32:83:1.00:2	./.
chr1	184680889	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:31:71:0.056:2	./.	./.	./.
chr1	184706804	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:31:128:0.032:2	./.
chr1	184764681	rs35545276	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,16:32:35:0.457:2	./.	./.
chr1	184764824	rs35704242	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,11:32:25:0.440:2	./.	./.
chr1	184765000	rs12750174	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,25:31:65:0.385:2	./.	./.	./.	./.	./.
chr1	184765072	rs28927681	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,9:32:21:0.429:2	./.	./.
chr1	184801065	rs487675	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,56:33:58:0.982:2	0/1:2,28:33:30:0.933:2	./.	0/1:39,21:33:60:0.350:2	0/1:15,15:32:30:0.500:2	0/1:31,21:33:52:0.404:2	./.	./.	0/1:37,18:34:55:0.327:2	./.	./.
chr1	185069030	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:33:175:0.023:2	./.
chr1	185119609	rs78652979	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,7:16:49:0.143:2
chr1	185135745	rs950327	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,52:30:52:1.00:2	0/1:0,21:29:21:1.00:2	0/1:5,3:29:8:0.375:2	./.	./.	./.	./.	./.	0/1:36,39:30:75:0.520:2	0/1:13,10:31:23:0.435:2	0/1:57,43:29:100:0.430:2
chr1	185137461	rs370174849	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,56:32:56:1.00:2	0/1:2,46:32:48:0.958:2	0/1:15,4:32:19:0.211:2	./.	./.	./.	./.	./.	0/1:98,18:32:116:0.155:2	0/1:107,21:30:128:0.164:2	0/1:104,22:32:126:0.175:2
chr1	185143721	rs10489579	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,41:33:95:0.432:2	0/1:33,25:32:58:0.431:2	./.	./.	./.	./.	./.	./.	0/1:54,46:33:100:0.460:2	0/1:27,45:31:72:0.625:2	0/1:65,65:33:130:0.500:2
chr1	185171869	rs6698109	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:57,56:30:115:0.496:2	0/1:23,23:31:46:0.500:2	0/1:4,6:30:10:0.600:2	./.	./.	./.	./.	./.	0/1:66,59:32:125:0.472:2	0/1:62,44:30:106:0.415:2	0/1:55,69:30:124:0.556:2
chr1	185240474	rs12041704	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:4,101:32:105:0.962:2	0/1:0,39:32:39:1.00:2	0/1:4,5:32:9:0.556:2	./.	./.	./.	./.	./.	0/1:64,53:32:117:0.453:2	0/1:52,30:33:82:0.366:2	0/1:82,57:31:139:0.410:2
chr1	185240506	rs149583877	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,30:31:95:0.316:2	./.	./.	./.
chr1	185270308	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:30:107:0.037:2	./.	./.	./.	./.
chr1	185277169	rs41264598	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,10:31:26:0.385:2	./.	./.	./.	./.	./.
chr1	185703968	rs114170176	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,18:32:50:0.360:2	0/1:16,22:32:38:0.579:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	185897793	rs199966462	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:33:129:0.031:2	./.	./.
chr1	185958737	rs7539719	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,59:33:110:0.536:2	0/1:38,34:32:72:0.472:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	185984517	rs6665753	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,29:29:44:0.659:2	0/1:21,30:28:51:0.588:2	0/1:1,6:29:7:0.857:2	0/1:0,70:29:70:1.00:2	0/1:2,80:28:82:0.976:2	./.	0/1:62,29:29:91:0.319:2	0/1:67,57:28:124:0.460:2	0/1:55,61:29:116:0.526:2	0/1:0,66:29:66:1.00:2	0/1:61,33:29:94:0.351:2
chr1	186024643	rs12067376	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,67:31:135:0.496:2	0/1:40,30:31:70:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	186026474	rs12129650	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,41:32:41:1.00:2	0/1:10,10:34:20:0.500:2	0/1:34,11:31:45:0.244:2	0/1:19,19:33:38:0.500:2	./.	0/1:25,25:33:50:0.500:2
chr1	186031041	rs7522627	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,36:31:58:0.621:2	0/1:24,15:32:39:0.385:2	0/1:3,3:32:6:0.500:2	0/1:36,16:31:52:0.308:2	./.	0/1:0,50:31:50:1.00:2	0/1:23,14:31:37:0.378:2	0/1:41,32:31:73:0.438:2	0/1:34,50:33:84:0.595:2	./.	0/1:49,34:31:83:0.410:2
chr1	186050417	rs10798035	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,15:33:15:1.00:2	0/1:28,38:32:66:0.576:2	./.	0/1:46,42:32:88:0.477:2	0/1:45,24:32:69:0.348:2	0/1:47,57:32:104:0.548:2	0/1:53,46:33:99:0.465:2	./.	0/1:55,36:32:91:0.396:2
chr1	186052030	rs201802854	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:71,12:13:83:0.145:2	./.	./.	0/1:109,35:10:144:0.243:2	0/1:99,17:10:116:0.147:2	0/1:96,32:10:129:0.250:2	0/1:105,35:11:141:0.250:2	0/1:97,30:13:127:0.236:2	0/1:136,30:8:166:0.181:2	./.	0/1:102,22:18:124:0.177:2
chr1	186063472	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:33:164:0.024:2
chr1	186064616	rs72720910	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,40:30:62:0.645:2	0/1:23,16:29:39:0.410:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	186084541	rs144346158	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,20:31:38:0.526:2	./.	./.	./.	./.	./.
chr1	186092103	rs41317489	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,33:32:60:0.550:2	0/1:26,13:31:39:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	186099180	rs41317491	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,79:33:178:0.444:2	0/1:55,59:33:114:0.518:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	186101539	rs10911825	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:39,36:32:75:0.480:2	0/1:21,11:31:32:0.344:2	./.	./.	./.	./.	0/1:32,41:30:73:0.562:2	0/1:34,33:31:67:0.493:2	0/1:41,36:32:77:0.468:2	./.	0/1:38,52:31:90:0.578:2
chr1	186105864	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.	./.
chr1	186113727	rs6693069	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,60:28:132:0.458:2	0/1:53,49:30:102:0.480:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	186134246	rs41317507	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,27:30:86:0.314:2	0/1:30,21:31:51:0.412:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	186135989	rs142456335	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,73:31:173:0.422:2	./.	./.	./.	./.	./.	./.	./.
chr1	186158725	rs151256828	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,51:33:119:0.429:2	0/1:40,32:33:72:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	186273994	rs2273779	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:56,30:31:86:0.349:2	0/1:23,24:32:47:0.511:2	./.	0/1:46,41:31:87:0.471:2	./.	0/1:41,43:31:85:0.512:2	0/1:26,26:31:52:0.500:2	./.	0/1:0,79:33:79:1.00:2	0/1:33,36:32:69:0.522:2	./.
chr1	186275564	rs12128607	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,23:32:65:0.354:2
chr1	186275760	rs16825150	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,13:31:13:1.00:2	./.	0/1:10,8:32:18:0.444:2	0/1:3,7:31:10:0.700:2	./.	./.	./.
chr1	186276291	rs151267614	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,10:32:10:1.00:2	./.	0/1:10,5:27:15:0.333:2	0/1:18,6:28:24:0.250:2	./.	./.	./.
chr1	186276451	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,3:27:12:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	186276661	rs61831150	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:7,4:24:11:0.364:2	0/1:5,5:27:10:0.500:2	./.	0/1:4,4:26:8:0.500:2	./.	0/1:3,9:30:12:0.750:2	0/1:6,3:30:9:0.333:2	./.	0/1:0,8:27:8:1.00:2	./.	./.
chr1	186277088	rs68069719	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,60:33:60:1.00:2	0/1:1,59:32:60:0.983:2	0/1:0,44:34:44:1.00:2	0/1:0,45:33:45:1.00:2	0/1:0,49:32:49:1.00:2
chr1	186277527	rs75928540	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,15:32:34:0.441:2	./.	./.	./.
chr1	186277989	rs3737940	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:28,28:28:56:0.500:2	0/1:18,23:29:41:0.561:2	./.	0/1:24,21:30:45:0.467:2	./.	0/1:28,20:29:48:0.417:2	0/1:29,27:29:57:0.482:2	./.	0/1:3,66:29:69:0.957:2	0/1:25,20:29:45:0.444:2	./.
chr1	186281400	rs12134934	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,26:32:64:0.406:2
chr1	186282016	rs80196755	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,28:33:60:0.467:2	./.	./.
chr1	186291512	rs10911846	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,78:30:175:0.446:2
chr1	186295259	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,7:29:158:0.044:2	./.	./.	./.
chr1	186301447	rs7526540	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,22:28:53:0.415:2
chr1	186302368	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,5:29:162:0.031:2	./.	./.	./.
chr1	186312469	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	186316488	rs3753565	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,186:31:188:0.989:2	./.	0/1:100,91:32:191:0.476:2	0/1:99,93:31:192:0.484:2	./.	./.	./.
chr1	186321242	rs61744267	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,15:32:35:0.429:2	./.	0/1:16,10:30:26:0.385:2	0/1:17,10:32:27:0.370:2	./.	./.	0/1:15,11:29:26:0.423:2	./.
chr1	186326714	rs200477368	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:31:105:0.038:2
chr1	186340119	rs185362673	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:32:10:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	186344714	rs371268243	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,50:29:109:0.459:2	./.	./.	./.
chr1	186363119	rs12084264	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:50,54:32:104:0.519:2	0/1:32,34:32:66:0.515:2	./.	0/1:57,44:32:101:0.436:2	./.	0/1:42,36:31:78:0.462:2	0/1:28,39:33:67:0.582:2	./.	0/1:0,112:33:112:1.00:2	0/1:33,39:32:72:0.542:2	./.
chr1	186418600	rs12407957	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,17:33:55:0.309:2	0/1:18,12:32:30:0.400:2	./.	./.	./.	./.	./.	./.	0/1:0,43:32:43:1.00:2	./.	./.
chr1	186643802	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:33:150:0.027:2	./.	./.	./.	./.
chr1	186646035	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,3:34:74:0.041:2	./.	./.	./.
chr1	186648197	rs5277	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,36:33:82:0.439:2	./.	0/1:51,24:33:75:0.320:2	0/1:36,31:33:67:0.463:2	./.	./.	0/1:23,22:34:45:0.489:2	0/1:37,41:33:78:0.526:2
chr1	186919863	rs6661772	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,22:29:34:0.647:2	./.	./.	./.	./.	0/1:18,29:30:47:0.617:2	./.
chr1	186946869	rs28395831	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:30:12:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	186946912	rs2307198	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,93:33:93:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,95:33:95:1.00:2	0/1:41,30:32:71:0.423:2	0/1:0,101:32:101:1.00:2	0/1:0,57:32:57:1.00:2	0/1:3,86:32:89:0.966:2	0/1:0,116:33:116:1.00:2	0/1:0,75:33:75:1.00:2	0/1:0,130:33:130:1.00:2
chr1	192547396	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,4:32:17:0.235:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	192627431	rs41300867	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,28:31:51:0.549:2	./.	./.	./.	./.
chr1	192989594	rs72738589	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,18:32:51:0.353:2	./.	./.	./.	0/1:38,49:32:87:0.563:2	0/1:50,21:33:71:0.296:2
chr1	193054088	rs72740218	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:31:8:0.500:2	0/1:2,5:33:7:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	193054154	rs10921309	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:33:9:0.444:2	0/1:9,3:33:12:0.250:2	./.	./.	0/1:10,3:31:13:0.231:2	./.	./.	./.	./.	./.	./.
chr1	193074651	rs10921310	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:32:11:1.00:2	0/1:0,3:32:3:1.00:2	./.	./.	0/1:1,5:31:6:0.833:2	0/1:0,2:30:2:1.00:2	0/1:0,10:30:10:1.00:2	./.	0/1:7,3:31:10:0.300:2	0/1:0,6:32:6:1.00:2	0/1:7,6:32:13:0.462:2
chr1	193091379	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:123,4:30:127:0.031:2	./.	./.	./.	./.	./.	./.
chr1	193150021	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:35:64:0.063:2	./.
chr1	193150219	rs28930674	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,14:29:29:0.483:2	./.	./.	./.	0/1:8,6:29:14:0.429:2	0/1:29,25:28:54:0.463:2
chr1	196227526	rs977157	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:31:89:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,93:31:93:1.00:2	0/1:1,114:32:115:0.991:2	0/1:0,106:33:106:1.00:2	0/1:0,87:32:88:1.00:2	0/1:0,110:31:110:1.00:2
chr1	196300374	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:32:172:0.024:2	./.	./.	./.
chr1	196642233	rs800292	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:55,32:31:87:0.368:2	0/1:25,30:32:55:0.545:2	./.	0/1:52,34:31:86:0.395:2	./.	0/1:45,32:30:77:0.416:2	./.	0/1:68,37:30:105:0.352:2	0/1:71,45:32:116:0.388:2	0/1:49,29:30:78:0.372:2	./.
chr1	196654324	rs1061147	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,118:33:119:0.992:2	0/1:0,78:33:78:1.00:2	0/1:1,17:32:18:0.944:2	0/1:0,132:33:132:1.00:2	0/1:93,55:32:148:0.372:2	0/1:87,86:33:174:0.497:2	0/1:1,132:33:133:0.992:2	0/1:2,150:32:152:0.987:2	0/1:102,93:34:195:0.477:2	0/1:75,49:32:124:0.395:2	0/1:92,89:32:181:0.492:2
chr1	196659237	rs1061170	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,164:31:164:1.00:2	0/1:0,122:31:122:1.00:2	0/1:0,16:30:16:1.00:2	0/1:2,193:30:195:0.990:2	0/1:75,43:30:118:0.364:2	0/1:118,81:30:199:0.407:2	0/1:2,91:31:94:0.978:2	0/1:0,152:30:152:1.00:2	0/1:124,74:32:198:0.374:2	0/1:106,71:31:177:0.401:2	0/1:101,96:31:197:0.487:2
chr1	196682947	rs2274700	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,151:32:153:0.987:2	0/1:1,103:32:104:0.990:2	0/1:24,17:31:41:0.415:2	0/1:1,185:31:186:0.995:2	./.	0/1:98,97:32:195:0.497:2	0/1:7,145:32:152:0.954:2	./.	0/1:117,81:33:198:0.409:2	0/1:106,86:32:192:0.448:2	0/1:110,85:32:195:0.436:2
chr1	196695675	rs143237092	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,56:30:112:0.500:2	./.	./.	./.	./.	./.	./.
chr1	196695742	rs3753396	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:33:12:0.583:2	./.	0/1:30,32:32:62:0.516:2	./.	./.	0/1:2,87:32:89:0.978:2	./.	./.	./.
chr1	196709774	rs1065489	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:28:14:0.571:2	./.	0/1:50,47:30:97:0.485:2	./.	./.	0/1:2,123:30:125:0.984:2	./.	./.	./.
chr1	196709816	rs149474608	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,64:31:152:0.421:2	./.	./.	./.	./.	./.	./.	./.
chr1	196709857	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:181,4:32:185:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr1	196712586	rs61822181	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:93,30:33:123:0.244:2	0/1:50,20:32:70:0.286:2	./.	0/1:80,30:32:110:0.273:2	0/1:55,15:31:70:0.214:2	./.	./.	0/1:69,25:31:94:0.266:2	0/1:72,32:34:104:0.308:2	0/1:87,20:32:107:0.187:2	./.
chr1	196715008	rs41265217	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:178,17:31:195:0.087:2	./.	./.	0/1:186,11:33:197:0.056:2	./.	./.	./.
chr1	196716356	rs61743622	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,4:33:196:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr1	196744082	rs191734103	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:35:155:0.026:2	./.	./.	./.
chr1	196748334	rs61737523	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:32:149:0.027:2	./.	./.
chr1	196757392	rs400344	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:32:26:1.00:2	0/1:0,22:33:22:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,50:33:50:1.00:2	0/1:38,19:32:57:0.333:2	./.	./.	0/1:0,50:33:50:1.00:2	0/1:71,22:32:93:0.237:2	0/1:53,19:33:72:0.264:2	./.
chr1	196757427	rs5002710	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,4:31:113:0.035:2	./.	./.	./.	./.	./.	./.
chr1	196757437	rs5002711	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:158,4:31:162:0.025:2	./.	./.	./.	./.	./.	./.
chr1	196759282	rs138675433	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.
chr1	196759347	rs149352569	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:133,5:30:138:0.036:2	./.	./.	0/1:35,37:31:72:0.514:2	./.	./.	./.
chr1	196763707	rs481759	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,11:31:48:0.229:2	./.	./.	0/1:3,11:31:14:0.786:2	./.	./.	./.
chr1	196797238	rs425757	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,8:31:11:0.727:2	0/1:1,3:31:4:0.750:2	./.	0/1:1,15:31:16:0.938:2	0/1:60,6:30:66:0.091:2	./.	./.	0/1:92,17:30:109:0.156:2	0/1:88,15:32:103:0.146:2	0/1:68,10:32:78:0.128:2	./.
chr1	196797244	rs113811987	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,7:32:10:0.700:2	./.	./.	0/1:1,12:33:13:0.923:2	0/1:61,4:31:65:0.062:2	./.	./.	0/1:97,14:32:111:0.126:2	0/1:90,15:34:105:0.143:2	0/1:73,7:32:80:0.088:2	./.
chr1	196797292	rs388862	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:1,2:33:3:0.667:2	./.	0/1:3,3:32:6:0.500:2	0/1:81,6:32:87:0.069:2	./.	./.	0/1:177,6:32:185:0.033:2	0/1:127,5:33:132:0.038:2	./.	./.
chr1	196799691	rs12406079	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,17:32:26:0.654:2	./.	0/1:133,64:31:198:0.325:2	./.	./.	0/1:119,75:32:194:0.387:2	./.	./.	./.
chr1	196801042	rs4230	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,167:32:178:0.938:2	0/1:8,113:32:121:0.934:2	0/1:1,35:31:36:0.972:2	0/1:11,180:32:191:0.942:2	0/1:105,93:31:198:0.470:2	0/1:18,5:32:23:0.217:2	0/1:30,6:29:36:0.167:2	0/1:132,65:31:198:0.330:2	0/1:123,75:32:198:0.379:2	0/1:112,75:32:187:0.401:2	./.
chr1	196801078	rs414628	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,160:31:169:0.947:2	0/1:8,105:31:113:0.929:2	0/1:2,41:30:43:0.953:2	0/1:8,163:30:171:0.953:2	0/1:101,88:30:189:0.466:2	0/1:21,4:31:25:0.160:2	0/1:31,10:31:41:0.244:2	0/1:118,70:31:188:0.372:2	0/1:110,84:32:195:0.433:2	0/1:120,75:31:195:0.385:2	./.
chr1	196871608	rs200977143	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:30:50:0.080:2	./.
chr1	196882003	rs2478007	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:33:199:0.020:2	0/1:193,4:32:197:0.020:2	./.	./.
chr1	196884258	rs150845796	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,22:30:69:0.319:2	./.	0/1:114,55:30:170:0.325:2	./.	./.	0/1:108,74:30:182:0.407:2	./.	./.	./.
chr1	196887397	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,5:33:175:0.029:2	./.	./.	./.
chr1	196887406	rs12744282	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:197:0.020:2	./.	./.	./.
chr1	196887457	rs10494745	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,87:31:192:0.453:2	./.	./.	./.	0/1:91,96:33:187:0.513:2	./.	./.
chr1	196918741	rs79351096	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,92:30:188:0.489:2	./.	./.	./.
chr1	196920148	rs4085749	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,41:30:97:0.423:2	./.	./.	./.	./.	0/1:63,45:30:108:0.417:2	0/1:54,34:29:88:0.386:2	./.
chr1	196946729	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,4:33:66:0.061:2	./.	./.	./.	./.	./.	./.
chr1	196946775	rs9427662	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,40:32:86:0.465:2	./.	./.	./.	./.
chr1	196952169	rs143503904	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,5:30:172:0.029:2	./.	./.	./.	./.	./.
chr1	196952173	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,5:30:173:0.029:2	./.	./.	./.	./.	./.
chr1	196965193	rs139017763	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,18:31:74:0.243:2	./.	./.	./.
chr1	196973806	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:32:103:0.039:2	./.	./.
chr1	197009798	rs5998	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,50:32:96:0.521:2	0/1:40,37:32:77:0.481:2	./.	0/1:45,35:32:80:0.438:2	0/1:0,74:32:74:1.00:2	0/1:0,138:33:138:1.00:2	./.	./.
chr1	197026289	rs17514281	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,57:32:121:0.471:2	./.	./.	./.	./.	./.
chr1	197030201	rs5997	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:27:36:1.00:2	0/1:0,13:27:13:1.00:2	0/1:0,5:28:5:1.00:2	0/1:1,33:29:34:0.971:2	0/1:0,25:27:25:1.00:2	0/1:0,37:27:37:1.00:2	0/1:16,10:28:26:0.385:2	0/1:0,17:25:17:1.00:2	0/1:0,40:28:40:1.00:2	0/1:0,27:27:27:1.00:2	0/1:0,44:26:44:1.00:2
chr1	197031021	rs6003	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:32:91:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,8:32:8:1.00:2	0/1:1,120:31:121:0.992:2	0/1:1,85:32:86:0.988:2	0/1:1,107:31:108:0.991:2	0/1:46,59:32:105:0.562:2	0/1:0,131:32:131:1.00:2	0/1:0,142:33:142:1.00:2	0/1:0,81:32:81:1.00:2	0/1:1,130:32:131:0.992:2
chr1	197061086	rs36004306	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,21:30:40:0.525:2	./.	./.	./.	./.	./.
chr1	197070372	rs41299627	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,30:32:69:0.435:2	./.	./.	./.	./.	./.	./.
chr1	197070442	rs3762271	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,18:33:51:0.353:2	0/1:26,17:32:43:0.395:2	0/1:0,8:32:8:1.00:2	0/1:61,29:32:90:0.322:2	0/1:29,23:32:52:0.442:2	0/1:0,57:31:58:1.00:2	./.	./.	./.	0/1:1,51:32:52:0.981:2	0/1:0,71:32:71:1.00:2
chr1	197070697	rs41310927	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,22:32:35:0.629:2	0/1:9,8:33:17:0.471:2	./.	0/1:6,13:33:19:0.684:2	0/1:18,14:33:32:0.438:2	0/1:2,27:31:29:0.931:2	./.	./.	./.	0/1:2,19:32:21:0.905:2	0/1:0,37:32:37:1.00:2
chr1	197070707	rs41308365	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,23:32:37:0.622:2	0/1:7,6:32:13:0.462:2	0/1:0,3:33:3:1.00:2	0/1:6,11:31:17:0.647:2	0/1:20,15:32:35:0.429:2	0/1:2,25:30:27:0.926:2	./.	./.	./.	0/1:0,18:33:18:1.00:2	0/1:0,39:31:39:1.00:2
chr1	197070776	rs10922162	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,42:33:66:0.636:2	./.	./.
chr1	197070815	rs1412640	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:33:76:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,11:31:11:1.00:2	0/1:1,73:32:74:0.986:2	0/1:0,62:32:62:1.00:2	0/1:1,94:32:95:0.989:2	0/1:39,28:32:67:0.418:2	0/1:0,98:33:98:1.00:2	0/1:0,85:33:85:1.00:2	0/1:0,96:33:96:1.00:2	0/1:0,132:33:132:1.00:2
chr1	197070901	rs964201	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,104:33:104:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,106:33:106:1.00:2	0/1:0,70:33:70:1.00:2	./.
chr1	197071758	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,6:32:198:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr1	197072420	rs41310925	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:68,58:33:126:0.460:2	0/1:61,38:32:99:0.384:2	0/1:1,27:33:28:0.964:2	0/1:82,93:32:175:0.531:2	0/1:87,88:32:175:0.503:2	0/1:0,193:32:193:1.00:2	./.	./.	./.	0/1:2,145:33:147:0.986:2	0/1:2,184:33:186:0.989:2
chr1	197073196	rs41299623	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,23:32:61:0.377:2	./.	./.	./.	./.
chr1	197073932	rs2878749	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,28:32:54:0.519:2	0/1:21,21:32:42:0.500:2	0/1:0,7:32:7:1.00:2	0/1:22,26:32:48:0.542:2	0/1:12,18:32:30:0.600:2	0/1:1,46:32:47:0.979:2	./.	./.	./.	0/1:0,32:32:32:1.00:2	0/1:0,68:31:68:1.00:2
chr1	197091537	rs4915337	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:32:81:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,120:31:121:1.00:2	0/1:1,76:30:77:0.987:2	0/1:0,97:31:97:1.00:2	0/1:55,49:31:104:0.471:2	0/1:0,104:31:104:1.00:2	0/1:0,108:31:109:1.00:2	0/1:0,62:30:63:1.00:2	0/1:0,111:32:112:1.00:2
chr1	197094030	rs6676084	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,39:31:81:0.481:2	0/1:15,19:32:34:0.559:2	./.	0/1:51,38:32:89:0.427:2	0/1:28,29:32:57:0.509:2	./.	0/1:22,19:31:41:0.463:2	0/1:2,63:31:65:0.969:2	0/1:41,45:32:86:0.523:2	./.	./.
chr1	197108946	rs17550662	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,10:32:49:0.204:2	./.	./.	./.	0/1:67,50:32:117:0.427:2	./.	./.
chr1	197112533	rs6677082	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:33:59:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,3:33:3:1.00:2	0/1:0,64:33:64:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,55:32:55:1.00:2	0/1:16,22:33:38:0.579:2	0/1:3,45:32:48:0.938:2	0/1:0,50:33:50:1.00:2	0/1:1,50:33:51:0.980:2	0/1:0,76:33:76:1.00:2
chr1	197113110	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,32:30:91:0.352:2	./.	./.	./.	./.	./.
chr1	197128726	rs12128631	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,46:31:96:0.479:2	./.	./.
chr1	197390368	rs3902057	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:32:67:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,8:32:8:1.00:2	0/1:1,65:32:66:0.985:2	0/1:0,49:32:49:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,66:32:66:1.00:2
chr1	197390491	rs142224492	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,35:31:100:0.350:2	./.	./.	./.	./.	./.
chr1	197396762	rs151104285	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,27:31:50:0.540:2	./.	./.	./.	./.	./.	./.
chr1	197411362	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:173,4:31:177:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr1	197446702	rs1135810	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,108:32:109:0.991:2	0/1:1,91:32:92:0.989:2	0/1:9,8:32:17:0.471:2	./.	0/1:2,108:31:110:0.982:2	./.	0/1:72,47:31:119:0.395:2	0/1:110,84:31:194:0.433:2	0/1:94,96:33:190:0.505:2	0/1:61,102:32:163:0.626:2	./.
chr1	197446906	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:31:143:0.028:2	./.	./.	./.	./.
chr1	197480927	rs12142127	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,11:32:25:0.440:2	./.	0/1:1,108:32:109:0.991:2	./.	./.	0/1:70,87:32:157:0.554:2	0/1:78,96:33:174:0.552:2	0/1:46,45:32:91:0.495:2	./.
chr1	197480986	rs10494755	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,82:32:169:0.485:2	0/1:82,102:33:184:0.554:2	./.	./.
chr1	197482023	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:31:128:0.031:2	./.	./.	./.	./.	./.
chr1	197704717	rs17641524	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,15:31:16:0.938:2	./.	./.	./.	./.	0/1:27,13:32:40:0.325:2	./.
chr1	197872019	rs4539165	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	0/1:2,4:31:6:0.667:2	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.
chr1	197874949	rs2270763	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,77:32:185:0.416:2	0/1:1,153:31:154:0.994:2	0/1:94,89:31:183:0.486:2	0/1:114,84:32:198:0.424:2	0/1:5,190:32:195:0.974:2	0/1:1,155:33:156:0.994:2	0/1:0,124:32:124:1.00:2	./.
chr1	197890492	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:31:71:0.056:2	./.
chr1	197896728	rs12046958	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,52:30:83:0.627:2	0/1:27,30:29:57:0.526:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,104:30:104:1.00:2
chr1	198214462	rs12046935	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,16:30:51:0.314:2	0/1:25,20:31:45:0.444:2	./.	./.	./.	./.
chr1	198225478	rs72731918	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,7:32:23:0.304:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	198665917	rs17612648	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,37:30:75:0.493:2	0/1:14,28:30:42:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	198671653	rs4915154	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,41:31:90:0.461:2	./.	./.	./.	./.	./.
chr1	198703306	rs6683595	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,34:31:85:0.400:2	./.	./.	./.	./.	./.	0/1:47,31:32:78:0.397:2	./.
chr1	198704294	rs7540378	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:106,85:28:191:0.445:2	./.	./.	./.	./.	./.	0/1:68,52:29:120:0.433:2	./.
chr1	198711078	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:34:189:0.021:2	./.	./.
chr1	198719731	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:31:94:0.043:2	./.	./.	./.
chr1	200008822	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:29:11:0.727:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	200017586	rs2821368	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,4:28:11:0.364:2	0/1:41,49:30:90:0.544:2	./.	./.	./.	./.	0/1:35,35:31:70:0.500:2	./.	./.
chr1	200143281	rs1060060	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,31:32:31:1.00:2	0/1:0,24:31:24:1.00:2	./.	./.	./.	./.	0/1:19,24:31:43:0.558:2	0/1:37,24:31:61:0.393:2	./.	0/1:18,14:33:32:0.438:2	0/1:30,26:33:56:0.464:2
chr1	200182732	rs116503230	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:32:11:0.364:2	0/1:9,4:31:13:0.308:2	./.	./.
chr1	200182733	rs80112494	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,4:29:13:0.308:2	0/1:10,4:23:14:0.286:2	./.	./.
chr1	200182834	rs12028402	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:85,94:28:179:0.525:2	0/1:57,39:28:96:0.406:2	0/1:15,10:28:25:0.400:2	./.	./.	0/1:1,189:28:190:0.995:2	./.	0/1:103,89:28:192:0.464:2	0/1:109,80:29:190:0.423:2	0/1:105,92:28:197:0.467:2	./.
chr1	200182945	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:33:179:0.022:2	./.	./.
chr1	200183398	rs10919847	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:70,74:32:144:0.514:2	0/1:36,39:31:75:0.520:2	0/1:11,13:32:24:0.542:2	./.	./.	0/1:1,188:31:189:0.995:2	0/1:140,6:31:148:0.041:2	0/1:90,97:31:187:0.519:2	0/1:94,80:33:174:0.460:2	0/1:54,70:32:124:0.565:2	./.
chr1	200183460	rs10919848	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:59,77:31:137:0.566:2	0/1:41,39:32:80:0.488:2	0/1:9,9:31:18:0.500:2	./.	./.	0/1:2,138:31:140:0.986:2	./.	0/1:70,57:32:128:0.449:2	0/1:68,72:33:140:0.514:2	0/1:63,67:32:130:0.515:2	./.
chr1	200311868	rs2790109	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,28:32:72:0.389:2	0/1:20,13:32:33:0.394:2	0/1:0,6:32:6:1.00:2	0/1:1,105:32:106:0.991:2	0/1:81,42:32:124:0.341:2	./.	0/1:0,78:32:78:1.00:2	0/1:0,114:32:114:1.00:2	0/1:74,49:33:123:0.398:2	0/1:54,43:33:97:0.443:2	0/1:1,93:32:96:0.989:2
chr1	200376608	rs74547203	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,34:32:68:0.500:2	./.	./.	./.
chr1	200376645	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:31:106:0.038:2	./.	./.	./.
chr1	200376695	rs35342093	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,67:32:123:0.545:2	./.	./.	./.	./.	./.	./.	./.
chr1	200522566	rs12120084	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,21:30:34:0.618:2	./.	./.	0/1:87,107:31:195:0.552:2	0/1:96,97:31:193:0.503:2	0/1:106,86:30:192:0.448:2	0/1:97,90:32:187:0.481:2	./.	0/1:94,94:31:188:0.500:2
chr1	200534248	rs7543730	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,38:32:96:0.396:2	0/1:42,26:32:68:0.382:2	0/1:8,4:31:12:0.333:2	0/1:100,51:32:151:0.338:2	0/1:35,31:31:66:0.470:2	0/1:94,42:30:136:0.309:2	0/1:45,35:31:80:0.438:2	0/1:73,36:31:109:0.330:2	0/1:83,74:32:157:0.471:2	0/1:0,81:32:81:1.00:2	0/1:66,53:32:119:0.445:2
chr1	200534255	rs77157287	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,39:33:103:0.379:2	0/1:42,25:32:67:0.373:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	200549451	rs115265657	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,51:33:129:0.395:2
chr1	200558363	rs6665951	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,110:33:110:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,142:33:142:1.00:2	0/1:46,38:32:84:0.452:2	0/1:70,76:32:146:0.521:2	0/1:0,97:33:97:1.00:2	0/1:0,141:32:141:1.00:2	0/1:78,62:34:140:0.443:2	0/1:1,142:33:143:0.993:2	0/1:3,176:33:180:0.983:2
chr1	200567476	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:31:100:0.040:2	./.	./.	./.	./.
chr1	200571102	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:165,4:32:169:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr1	200574959	rs2808238	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,38:32:80:0.481:2	0/1:18,27:32:45:0.600:2	0/1:7,6:33:13:0.462:2	0/1:51,51:32:102:0.500:2	0/1:43,20:32:63:0.317:2	0/1:48,49:31:97:0.505:2	0/1:39,32:32:71:0.451:2	0/1:43,51:32:94:0.543:2	0/1:53,68:33:121:0.562:2	./.	./.
chr1	200587170	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,5:27:187:0.027:2	./.	./.	./.	./.	./.
chr1	200618238	rs6665604	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,110:30:110:1.00:2	0/1:0,61:29:61:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,113:30:113:1.00:2	0/1:0,86:29:86:1.00:2	0/1:0,137:30:137:1.00:2	0/1:0,80:30:80:1.00:2	0/1:0,114:29:114:1.00:2	0/1:0,158:30:158:1.00:2	0/1:0,126:30:126:1.00:2	0/1:97,83:30:180:0.461:2
chr1	200635550	rs3795634	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,26:30:65:0.400:2	./.	./.	./.	./.	./.	0/1:50,30:30:80:0.375:2	./.
chr1	200635560	rs3795633	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,28:31:70:0.400:2	./.	./.	./.	./.	./.	0/1:53,33:31:86:0.384:2	./.
chr1	200635617	rs78479136	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,47:31:93:0.505:2	0/1:26,34:31:60:0.567:2	0/1:7,6:31:13:0.462:2	0/1:58,58:30:116:0.500:2	./.	./.	0/1:54,50:32:104:0.481:2	./.	./.	./.	./.
chr1	200635723	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.	./.	./.	./.
chr1	200709043	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:34:171:0.024:2
chr1	200801935	rs41306231	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,55:30:118:0.466:2	./.	./.
chr1	200818318	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,10:15:38:0.263:2	./.	./.
chr1	200818980	rs6674599	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,52:30:109:0.477:2	./.
chr1	200826515	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:31:46:0.087:2	./.
chr1	200867492	rs2271018	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,42:28:97:0.433:2	0/1:59,46:29:105:0.438:2	./.	./.	0/1:70,66:28:136:0.485:2	./.	0/1:38,24:29:62:0.387:2	./.
chr1	200878026	rs41313912	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,23:30:55:0.418:2	./.	./.	./.	./.	./.	./.
chr1	200880711	rs200496052	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:31:109:0.038:2	./.	./.	./.
chr1	200880869	rs45547233	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:16,15:25:31:0.484:2	0/1:17,19:26:36:0.528:2	./.	0/1:26,5:28:31:0.161:2	./.	0/1:35,20:29:55:0.364:2	./.	./.	./.	./.	./.
chr1	200881172	rs296521	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,4:30:7:0.571:2	0/1:3,10:28:13:0.769:2	./.	0/1:0,8:26:8:1.00:2	./.	0/1:1,7:28:8:0.875:2	./.
chr1	200956288	rs2275485	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:19,23:31:42:0.548:2	0/1:10,14:30:24:0.583:2	./.	0/1:38,23:31:61:0.377:2	./.	0/1:29,15:29:44:0.341:2	./.	./.	./.	./.	./.
chr1	200957412	rs76094226	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,41:32:97:0.423:2	./.	./.	./.	./.	./.	./.
chr1	200957450	rs200705792	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,8:16:75:0.107:2	./.	./.	./.	./.	./.	./.	./.
chr1	200957691	rs2297912	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,17:33:18:0.944:2	0/1:1,6:32:7:0.857:2	./.	0/1:2,18:33:20:0.900:2	./.	0/1:7,17:33:24:0.708:2	./.	./.	./.	./.	./.
chr1	200957697	rs12142704	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:28:5:1.00:2	./.	./.
chr1	200959302	rs2297911	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:80,50:31:130:0.385:2	0/1:49,56:31:105:0.533:2	./.	0/1:94,74:31:168:0.440:2	./.	0/1:93,91:30:184:0.495:2	./.	./.	./.	./.	./.
chr1	200969921	rs6692427	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:25,14:33:39:0.359:2	0/1:20,14:32:34:0.412:2	./.	0/1:43,35:32:78:0.449:2	./.	0/1:40,50:32:90:0.556:2	./.	./.	./.	./.	./.
chr1	201009182	rs12139527	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:51,37:31:88:0.420:2	0/1:27,25:30:52:0.481:2	./.	0/1:56,23:30:79:0.291:2	./.	0/1:36,43:30:79:0.544:2	./.	./.	./.	./.	./.
chr1	201012484	rs13374149	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,72:32:184:0.391:2	./.	./.	./.
chr1	201012597	rs41267497	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:31:12:0.500:2	./.	./.	0/1:51,36:32:87:0.414:2	0/1:46,36:32:82:0.439:2	./.	0/1:27,61:33:88:0.693:2	./.	./.
chr1	201013535	rs183195890	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,8:32:30:0.267:2	./.
chr1	201017805	rs79011683	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,9:22:55:0.164:2	./.	./.	0/1:55,27:20:82:0.329:2	0/1:69,41:18:111:0.373:2	0/1:38,26:16:64:0.406:2	0/1:59,39:17:98:0.398:2	0/1:55,38:17:93:0.409:2	0/1:54,24:16:78:0.308:2	0/1:37,12:25:49:0.245:2	0/1:28,12:21:40:0.300:2
chr1	201022411	rs142184434	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,83:31:156:0.532:2	./.	./.	./.	./.
chr1	201038687	rs7415038	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,20:32:20:1.00:2	0/1:85,81:33:166:0.488:2	./.	0/1:95,82:32:177:0.463:2	0/1:117,75:32:192:0.391:2	0/1:107,82:33:189:0.434:2	0/1:76,83:33:159:0.522:2	0/1:66,56:32:122:0.459:2	0/1:62,47:32:109:0.431:2
chr1	201047062	rs4915476	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:41,49:31:90:0.544:2	0/1:25,25:32:50:0.500:2	0/1:3,8:32:11:0.727:2	./.	./.	0/1:68,65:31:133:0.489:2	0/1:111,82:31:193:0.425:2	./.	0/1:51,49:31:100:0.490:2	0/1:56,49:31:105:0.467:2	./.
chr1	201047075	rs4915477	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,50:28:98:0.510:2	0/1:25,31:28:56:0.554:2	0/1:0,10:29:10:1.00:2	0/1:0,151:28:151:1.00:2	./.	0/1:72,74:28:146:0.507:2	0/1:107,84:28:192:0.440:2	0/1:125,74:29:199:0.372:2	0/1:55,57:29:112:0.509:2	0/1:1,104:29:105:0.990:2	0/1:55,50:27:105:0.476:2
chr1	201047111	rs9427714	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,4:34:19:0.211:2	0/1:98,86:33:184:0.467:2	./.	./.	./.	0/1:122,66:32:189:0.351:2	./.	0/1:61,48:33:109:0.440:2	0/1:64,50:32:114:0.439:2
chr1	201047135	rs16847674	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,79:30:163:0.485:2	./.	./.	./.	./.	./.	./.	./.
chr1	201052310	rs12742169	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,43:30:110:0.391:2	./.	./.	./.	0/1:57,55:30:112:0.491:2	./.	0/1:45,48:29:93:0.516:2	0/1:40,35:30:75:0.467:2
chr1	201052312	rs12742170	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,43:30:111:0.387:2	./.	./.	./.	0/1:60,55:29:115:0.478:2	./.	0/1:45,48:29:93:0.516:2	0/1:39,35:29:74:0.473:2
chr1	201060865	rs2296383	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,7:31:23:0.304:2	0/1:4,141:31:145:0.972:2	./.	./.	./.	./.	./.	0/1:62,46:31:108:0.426:2	0/1:67,57:31:124:0.460:2
chr1	201079344	rs12406479	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,60:33:163:0.368:2	./.	./.	./.	./.	./.	./.
chr1	201112981	rs8158	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,50:32:51:0.980:2	0/1:0,42:32:42:1.00:2	0/1:0,7:32:7:1.00:2	./.	0/1:1,88:32:90:0.989:2	0/1:1,109:32:110:0.991:2	0/1:1,132:33:133:0.992:2	0/1:0,129:32:129:1.00:2	0/1:0,92:33:92:1.00:2	0/1:43,39:33:82:0.476:2	0/1:59,45:32:104:0.433:2
chr1	201122947	rs1925361	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:30:86:1.00:2	0/1:0,48:29:48:1.00:2	0/1:0,14:28:14:1.00:2	0/1:89,69:30:158:0.437:2	0/1:0,177:29:178:1.00:2	0/1:0,139:28:139:1.00:2	0/1:0,156:29:156:1.00:2	0/1:0,186:29:186:1.00:2	0/1:0,126:30:126:1.00:2	0/1:58,59:29:117:0.504:2	0/1:0,106:28:106:1.00:2
chr1	201162411	rs12089471	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,33:32:33:1.00:2	0/1:0,15:32:15:1.00:2	0/1:2,5:30:7:0.714:2	./.	./.	0/1:17,12:31:29:0.414:2	0/1:13,17:31:30:0.567:2	0/1:3,25:31:28:0.893:2	0/1:15,11:33:26:0.423:2	./.	./.
chr1	201163358	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,42:30:76:0.553:2	0/1:11,21:29:32:0.656:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	201165002	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	201166383	rs4915221	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,7:31:12:0.583:2	0/1:0,93:31:93:1.00:2	0/1:0,149:31:149:1.00:2	0/1:48,42:31:90:0.467:2	0/1:82,61:31:143:0.427:2	./.	0/1:55,35:31:91:0.389:2	0/1:0,68:31:68:1.00:2	0/1:0,56:32:56:1.00:2
chr1	201166435	rs11589317	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:27:41:1.00:2	0/1:0,32:27:32:1.00:2	0/1:0,4:26:4:1.00:2	0/1:0,64:29:64:1.00:2	0/1:0,76:28:76:1.00:2	0/1:0,54:28:54:1.00:2	0/1:0,75:29:75:1.00:2	0/1:0,69:29:69:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,47:28:47:1.00:2	0/1:0,38:28:38:1.00:2
chr1	201168499	rs1534057	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,31:31:64:0.484:2	./.	./.	./.	./.	./.	./.
chr1	201174240	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:32:46:0.087:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	201175227	rs832156	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,38:31:39:0.974:2	0/1:0,19:32:19:1.00:2	./.	0/1:54,37:31:91:0.407:2	0/1:40,41:31:81:0.506:2	0/1:49,37:31:86:0.430:2	0/1:33,31:31:64:0.484:2	0/1:60,30:32:90:0.333:2	0/1:46,32:32:78:0.410:2	./.	0/1:0,90:31:90:1.00:2
chr1	201175274	rs9651057	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,13:31:24:0.542:2	0/1:6,9:29:15:0.600:2	0/1:0,2:30:2:1.00:2	0/1:22,34:30:56:0.607:2	0/1:22,12:31:34:0.353:2	0/1:27,30:31:57:0.526:2	0/1:22,20:31:42:0.476:2	0/1:1,39:30:40:0.975:2	0/1:15,27:31:42:0.643:2	0/1:0,39:31:39:1.00:2	./.
chr1	201181920	rs12060924	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,16:29:44:0.364:2	0/1:13,9:31:22:0.409:2	./.	0/1:28,31:30:59:0.525:2	0/1:28,12:30:40:0.300:2	0/1:24,15:29:39:0.385:2	0/1:20,19:30:39:0.487:2	./.	0/1:22,27:31:49:0.551:2	./.	0/1:33,31:31:64:0.484:2
chr1	201181994	rs6688782	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,35:32:76:0.467:2
chr1	201182056	rs182559666	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,19:31:43:0.442:2	./.	./.	./.	./.	./.
chr1	201183363	rs2282415	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,9:31:17:0.529:2	0/1:5,8:31:13:0.615:2	./.	0/1:26,15:32:41:0.366:2	0/1:8,14:32:22:0.636:2	0/1:17,12:32:29:0.414:2	0/1:20,11:31:31:0.355:2	./.	0/1:16,16:31:32:0.500:2	./.	0/1:21,14:32:35:0.400:2
chr1	201183402	rs1568810	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,11:32:29:0.379:2	0/1:8,10:31:18:0.556:2	./.	0/1:37,27:31:64:0.422:2	0/1:21,25:31:46:0.543:2	0/1:30,13:31:43:0.302:2	0/1:31,21:30:52:0.404:2	./.	0/1:31,26:32:57:0.456:2	./.	0/1:33,25:30:58:0.431:2
chr1	201184275	rs2275673	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:73,47:32:120:0.392:2	0/1:38,51:32:89:0.573:2	./.	0/1:96,70:32:166:0.422:2	0/1:110,76:31:186:0.409:2	0/1:84,88:31:172:0.512:2	0/1:81,86:32:167:0.515:2	./.	0/1:68,61:32:129:0.473:2	./.	0/1:70,54:32:124:0.435:2
chr1	201185752	rs143770388	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,31:30:62:0.500:2	./.	./.	./.
chr1	201187764	rs10920144	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,16:30:16:1.00:2	0/1:0,14:29:14:1.00:2	./.	0/1:0,24:27:24:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,20:28:20:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,14:28:14:1.00:2
chr1	201190732	rs3738269	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,8:29:16:0.500:2	0/1:83,59:30:142:0.415:2	0/1:94,84:30:179:0.472:2	0/1:60,70:30:130:0.538:2	0/1:62,62:30:124:0.500:2	0/1:67,92:30:160:0.579:2	0/1:59,63:31:122:0.516:2	0/1:1,118:30:119:0.992:2	./.
chr1	201191944	rs114765060	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,23:32:55:0.418:2
chr1	201195119	rs3738270	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,64:30:66:0.970:2	0/1:0,25:31:25:1.00:2	0/1:0,13:29:13:1.00:2	0/1:0,60:29:60:1.00:2	0/1:0,79:29:79:1.00:2	0/1:29,43:30:72:0.597:2	0/1:19,23:29:42:0.548:2	0/1:1,86:29:87:0.989:2	0/1:0,72:31:72:1.00:2	./.	0/1:27,15:31:42:0.357:2
chr1	201196198	rs139902323	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:33:117:0.034:2	./.	./.	./.	./.	./.
chr1	201197471	rs3753973	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,32:30:60:0.533:2	0/1:25,12:30:38:0.324:2	./.	0/1:57,38:30:95:0.400:2	0/1:51,31:30:82:0.378:2	./.	./.	0/1:2,77:30:79:0.975:2	0/1:50,28:31:78:0.359:2	./.	./.
chr1	201252866	rs2268147	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,83:30:175:0.474:2	0/1:120,75:30:195:0.385:2	./.	./.	./.	./.
chr1	201282573	rs35507614	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,86:29:173:0.497:2	0/1:86,87:29:173:0.503:2	./.	./.	./.	0/1:99,65:28:164:0.396:2
chr1	201285712	rs7514146	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,90:31:180:0.500:2	./.	./.	./.
chr1	201285759	rs1779297	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,141:32:141:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,181:33:181:1.00:2	0/1:0,179:32:179:1.00:2	0/1:0,176:32:176:1.00:2	0/1:0,185:33:185:1.00:2	0/1:0,186:32:186:1.00:2	0/1:0,181:34:181:1.00:2	0/1:0,140:32:140:1.00:2	0/1:0,141:32:141:1.00:2
chr1	201286771	rs1722779	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:55,51:32:107:0.481:2	0/1:41,31:31:72:0.431:2	./.	0/1:58,63:31:121:0.521:2	./.	0/1:69,77:31:146:0.527:2	./.	0/1:62,75:31:137:0.547:2	./.	./.	./.
chr1	201288955	rs1626370	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:8,9:32:17:0.529:2	0/1:4,6:32:10:0.600:2	./.	0/1:4,14:31:18:0.778:2	./.	0/1:12,17:32:29:0.586:2	./.	0/1:20,20:31:40:0.500:2	./.	./.	./.
chr1	201291119	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:34:83:0.048:2	./.	./.
chr1	201297933	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,41:33:105:0.390:2	./.	./.	./.	./.	./.
chr1	201331554	rs1104859	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,14:33:40:0.350:2	0/1:13,20:32:33:0.606:2	0/1:0,7:32:7:1.00:2	0/1:0,36:33:36:1.00:2	0/1:0,22:32:22:1.00:2	0/1:34,17:32:51:0.333:2	0/1:0,28:33:28:1.00:2	0/1:33,24:33:57:0.421:2	0/1:0,46:34:46:1.00:2	0/1:29,28:34:57:0.491:2	0/1:28,34:33:63:0.548:2
chr1	201334382	rs3729547	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,53:31:115:0.461:2	0/1:59,26:32:85:0.306:2	0/1:0,9:31:9:1.00:2	0/1:0,140:31:140:1.00:2	0/1:1,157:32:158:0.994:2	0/1:89,72:32:161:0.447:2	0/1:0,141:31:141:1.00:2	0/1:96,71:31:168:0.425:2	0/1:0,135:32:135:1.00:2	0/1:83,59:32:142:0.415:2	0/1:88,59:32:147:0.401:2
chr1	201334762	rs140245123	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,58:30:95:0.611:2	./.	./.	./.	./.
chr1	201334795	rs3729845	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,25:31:82:0.305:2	./.	0/1:65,38:32:103:0.369:2	./.	./.	./.	0/1:42,30:32:72:0.417:2
chr1	201350983	rs16848494	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,62:32:135:0.459:2	./.
chr1	201351421	rs2275866	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,88:30:186:0.473:2	./.	./.	./.	0/1:108,82:30:192:0.432:2	0/1:100,88:30:190:0.468:2
chr1	201355522	rs4128458	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,12:30:35:0.343:2	0/1:8,10:33:18:0.556:2	0/1:0,9:33:9:1.00:2	0/1:24,14:33:38:0.368:2	0/1:34,21:32:55:0.382:2	0/1:0,44:32:44:1.00:2	0/1:32,26:33:58:0.448:2	0/1:1,69:33:70:0.986:2	0/1:32,17:30:49:0.347:2	0/1:0,39:32:39:1.00:2	0/1:1,45:32:46:0.978:2
chr1	201355653	rs11805972	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,38:32:70:0.543:2
chr1	201355669	rs68021059	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,26:31:71:0.366:2	0/1:61,37:32:98:0.378:2	./.	0/1:43,32:33:75:0.427:2	./.	0/1:36,41:33:77:0.532:2	./.	./.
chr1	201355761	rs12088790	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,31:29:58:0.534:2
chr1	201355789	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,4:31:35:0.114:2	./.	./.	./.	./.	./.	./.	./.
chr1	201355943	rs2799677	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,22:31:65:0.338:2	0/1:24,16:32:40:0.400:2	0/1:0,5:31:5:1.00:2	0/1:39,21:31:60:0.350:2	0/1:30,14:31:44:0.318:2	0/1:0,46:31:46:1.00:2	0/1:25,19:30:44:0.432:2	0/1:0,48:30:48:1.00:2	0/1:33,27:31:60:0.450:2	0/1:0,33:31:33:1.00:2	0/1:0,65:30:65:1.00:2
chr1	201358304	rs3738281	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,61:30:121:0.504:2	./.	./.	./.	0/1:39,36:31:75:0.480:2	./.
chr1	201382184	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:33:185:0.022:2	./.	./.	./.	./.
chr1	201383730	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:28:59:0.069:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	201453829	rs138467738	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,39:30:78:0.500:2	./.	./.	./.	./.	./.	0/1:33,29:32:62:0.468:2	./.
chr1	201618264	rs1267119	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,8:29:15:0.533:2	./.	./.	./.
chr1	201751707	.	T	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:110,35:7:146:0.241:2	0/1:107,39:8:146:0.267:2	./.	0/1:114,41:9:155:0.265:2	0/1:126,27:12:153:0.176:2	./.	0/1:82,18:10:100:0.180:2
chr1	201754412	rs12146005	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,8:33:28:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	201754444	rs16849342	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	./.	0/1:38,31:30:69:0.449:2	0/1:12,13:31:25:0.520:2	./.	./.	./.	./.
chr1	201754505	rs188281314	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,30:30:73:0.411:2	./.	./.	./.	./.
chr1	201777250	rs2820289	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,103:31:187:0.551:2	./.	./.	./.	./.	./.	./.
chr1	201780791	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,6:31:115:0.052:2	./.	./.	./.	./.	./.	./.
chr1	201827669	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:33:149:0.027:2
chr1	201845175	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:32:85:0.047:2	./.
chr1	201860626	rs2250377	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,10:29:28:0.357:2	0/1:16,10:32:27:0.385:2	./.	0/1:20,40:32:60:0.667:2	0/1:16,25:31:41:0.610:2	0/1:13,21:31:34:0.618:2	0/1:16,25:31:41:0.610:2	0/1:0,74:32:74:1.00:2	0/1:1,60:32:61:0.984:2	0/1:0,45:31:45:1.00:2	0/1:1,48:31:49:0.980:2
chr1	201869257	rs2820312	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:102,92:31:194:0.474:2	0/1:48,69:31:117:0.590:2	0/1:11,5:31:16:0.313:2	0/1:83,85:31:168:0.506:2	0/1:67,64:31:131:0.489:2	0/1:77,85:31:162:0.525:2	0/1:66,84:32:151:0.560:2	./.	./.	./.	./.
chr1	201869563	rs369212393	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,76:31:187:0.406:2	./.	./.	./.	./.	./.
chr1	201952574	rs4950806	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:32,11:33:43:0.256:2	0/1:1,180:33:181:0.994:2	0/1:100,83:32:183:0.454:2	./.	0/1:1,180:33:181:0.994:2	./.	0/1:2,175:34:177:0.989:2	0/1:120,71:33:191:0.372:2	0/1:100,90:32:190:0.474:2
chr1	201952598	rs56768485	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,19:30:52:0.365:2	./.	0/1:99,90:31:190:0.476:2	./.	0/1:2,175:31:177:0.989:2	./.	./.	./.	./.
chr1	201958045	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr1	201958588	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:36:164:0.024:2	./.	./.	./.
chr1	201958634	rs147777734	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,41:31:72:0.569:2	./.
chr1	201966627	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:33:80:0.050:2
chr1	201969082	rs1130790	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,53:30:129:0.414:2	./.	./.	./.	0/1:76,45:31:121:0.372:2	0/1:0,150:32:150:1.00:2	./.	0/1:58,59:30:117:0.504:2
chr1	201970562	rs4332408	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,95:33:96:0.990:2	0/1:0,75:33:75:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,121:33:121:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,120:32:121:1.00:2	0/1:0,116:33:116:1.00:2	0/1:0,147:33:147:1.00:2	0/1:0,128:34:128:1.00:2	0/1:0,122:33:122:1.00:2	0/1:0,131:33:131:1.00:2
chr1	201972397	rs192133580	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,25:31:63:0.397:2	./.	./.	./.
chr1	201973565	rs3820439	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:12,5:33:17:0.294:2	0/1:6,8:31:14:0.571:2	./.	./.	0/1:12,7:32:19:0.368:2	./.	0/1:0,11:32:11:1.00:2	./.	./.	./.	./.
chr1	201974712	rs12712	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,50:32:123:0.407:2	./.	./.	./.	0/1:71,43:32:114:0.377:2	./.
chr1	201981218	rs11543979	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,79:33:140:0.564:2	./.	./.	./.	0/1:89,76:32:165:0.461:2	./.	0/1:37,45:32:82:0.549:2	./.
chr1	201981233	rs115158470	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,82:33:132:0.621:2	./.	./.	./.	./.	./.	./.	./.
chr1	201981774	rs55729978	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,16:29:32:0.516:2	./.	./.	./.	./.	./.	./.	./.
chr1	201981862	rs2819362	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,19:31:35:0.543:2	0/1:10,4:31:14:0.286:2	./.	0/1:0,22:31:22:1.00:2	0/1:17,9:30:26:0.346:2	0/1:21,7:28:28:0.250:2	0/1:12,9:31:21:0.429:2	0/1:12,12:29:24:0.500:2	./.	0/1:0,12:29:12:1.00:2	./.
chr1	202092332	rs3795594	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,21:31:49:0.429:2	0/1:19,12:32:31:0.387:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	202092360	rs3795595	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:30:52:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,5:29:5:1.00:2	0/1:29,25:31:54:0.463:2	0/1:0,41:30:41:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,58:30:58:1.00:2	0/1:1,53:31:54:0.981:2	0/1:24,27:31:51:0.529:2	0/1:0,51:30:51:1.00:2
chr1	202092415	rs3795596	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:31:69:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,15:30:15:1.00:2	0/1:65,50:31:115:0.435:2	0/1:1,104:31:105:0.990:2	0/1:0,82:31:82:1.00:2	0/1:1,99:31:100:0.990:2	0/1:1,95:31:96:0.990:2	0/1:0,97:32:97:1.00:2	0/1:49,54:31:103:0.524:2	0/1:0,86:31:86:1.00:2
chr1	202092580	rs7516762	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,156:28:156:1.00:2	0/1:0,150:29:150:1.00:2	0/1:0,39:28:39:1.00:2	0/1:108,84:29:194:0.438:2	0/1:2,170:28:172:0.988:2	0/1:0,184:29:185:1.00:2	0/1:2,186:28:188:0.989:2	0/1:1,189:28:190:0.995:2	0/1:1,180:29:181:0.994:2	0/1:90,100:28:191:0.526:2	0/1:0,175:28:175:1.00:2
chr1	202097658	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,36:30:98:0.367:2	./.	./.	./.	./.	./.	./.
chr1	202107549	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:128,4:32:133:0.030:2	./.	./.	./.	./.	./.	./.
chr1	202128601	rs61757798	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,4:31:52:0.077:2	./.	0/1:0,50:32:50:1.00:2	./.	./.	./.	./.	./.
chr1	202129826	rs4309039	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:26:36:1.00:2	0/1:0,14:26:14:1.00:2	0/1:4,3:27:7:0.429:2	0/1:0,37:27:37:1.00:2	0/1:36,27:26:63:0.429:2	0/1:26,29:26:55:0.527:2	./.	0/1:22,30:27:52:0.577:2	0/1:0,35:27:35:1.00:2	0/1:20,13:25:33:0.394:2	./.
chr1	202129895	rs3935295	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:33:5:0.600:2	./.	./.
chr1	202172943	rs72746693	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,38:29:82:0.463:2	./.	0/1:21,19:29:40:0.475:2	./.
chr1	202183308	rs10920362	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:24,25:31:49:0.510:2	0/1:10,14:31:24:0.583:2	0/1:2,4:27:6:0.667:2	./.	0/1:19,19:30:38:0.500:2	0/1:11,26:28:37:0.703:2	0/1:7,11:28:18:0.611:2	0/1:20,24:30:44:0.545:2	0/1:18,20:31:38:0.526:2	./.	0/1:0,28:30:28:1.00:2
chr1	202183327	rs79821910	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,23:30:36:0.639:2	./.
chr1	202276494	rs896551	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,111:33:111:1.00:2	0/1:0,40:32:40:1.00:2	0/1:11,14:30:25:0.560:2	0/1:0,150:32:150:1.00:2	0/1:113,73:32:186:0.392:2	0/1:1,169:32:170:0.994:2	0/1:105,86:32:191:0.450:2	0/1:98,71:33:169:0.420:2	0/1:77,69:33:146:0.473:2	./.	0/1:65,48:32:113:0.425:2
chr1	202287206	rs788795	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,93:30:94:1.00:2	0/1:0,54:30:55:1.00:2	0/1:4,6:32:10:0.600:2	0/1:2,83:30:85:0.976:2	0/1:78,46:30:124:0.371:2	0/1:1,112:30:114:0.991:2	0/1:50,38:29:88:0.432:2	0/1:71,48:30:120:0.403:2	0/1:45,73:31:118:0.619:2	./.	0/1:35,29:29:64:0.453:2
chr1	202287537	rs788794	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:29:22:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,13:27:13:1.00:2	0/1:7,11:30:18:0.611:2	0/1:0,20:29:20:1.00:2	0/1:2,5:32:7:0.714:2	0/1:4,5:30:9:0.556:2	0/1:5,7:28:12:0.583:2	./.	./.
chr1	202287813	rs788793	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:28:64:1.00:2	0/1:0,46:29:46:1.00:2	0/1:13,4:31:17:0.235:2	0/1:2,127:29:129:0.984:2	0/1:104,64:30:168:0.381:2	0/1:3,114:29:117:0.974:2	0/1:78,50:29:128:0.391:2	0/1:86,43:30:129:0.333:2	0/1:75,37:30:112:0.330:2	./.	0/1:40,18:29:58:0.310:2
chr1	202304868	rs14451	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:29:18:0.500:2	./.	0/1:58,50:29:108:0.463:2	./.	0/1:70,46:29:116:0.397:2	0/1:85,47:29:132:0.356:2	0/1:42,43:30:85:0.506:2	0/1:0,64:29:64:1.00:2	0/1:56,43:28:99:0.434:2
chr1	202414202	rs112341840	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,41:31:98:0.423:2
chr1	202443063	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:152,4:32:156:0.026:2	./.	./.	./.	./.	./.	./.
chr1	202565921	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,24:33:54:0.444:2	0/1:25,11:32:36:0.306:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	202565948	rs504261	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,37:31:70:0.529:2	0/1:52,39:31:91:0.429:2	0/1:22,30:31:52:0.577:2	0/1:22,31:31:53:0.585:2	./.
chr1	202566086	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:31:83:0.048:2	./.	./.
chr1	202569593	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:33:52:0.077:2	./.
chr1	202569600	rs115267501	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,39:33:41:0.951:2
chr1	202574784	rs1968583	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,113:30:113:1.00:2	0/1:1,65:31:66:0.985:2	0/1:0,6:31:6:1.00:2	0/1:0,129:30:130:1.00:2	0/1:0,81:30:81:1.00:2	0/1:2,143:29:145:0.986:2	0/1:80,67:30:147:0.456:2	0/1:77,66:29:143:0.462:2	0/1:72,78:31:150:0.520:2	0/1:68,57:31:126:0.456:2	0/1:0,114:31:116:1.00:2
chr1	202705455	rs1141109	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,37:30:71:0.521:2	0/1:21,20:29:41:0.488:2	0/1:0,8:29:8:1.00:2	0/1:0,73:29:73:1.00:2	0/1:0,97:30:97:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,68:29:69:1.00:2	0/1:1,108:29:109:0.991:2	0/1:0,81:30:81:1.00:2	0/1:2,64:30:66:0.970:2	0/1:48,32:29:80:0.400:2
chr1	202715284	rs1141108	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,45:30:116:0.388:2	0/1:35,26:31:61:0.426:2	0/1:0,12:30:12:1.00:2	0/1:1,90:30:91:0.989:2	0/1:2,81:29:83:0.976:2	0/1:0,96:30:96:1.00:2	0/1:0,92:30:92:1.00:2	0/1:0,122:30:122:1.00:2	0/1:0,102:30:102:1.00:2	0/1:0,83:30:83:1.00:2	0/1:70,61:31:132:0.466:2
chr1	202718202	rs1892164	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,45:32:84:0.536:2	0/1:34,29:32:63:0.460:2	0/1:1,8:32:9:0.889:2	0/1:0,106:31:106:1.00:2	0/1:1,95:31:96:0.990:2	0/1:0,108:31:108:1.00:2	0/1:1,128:32:129:0.992:2	0/1:1,123:32:124:0.992:2	0/1:1,124:32:125:0.992:2	0/1:0,83:32:83:1.00:2	0/1:56,73:32:129:0.566:2
chr1	202733238	rs3196669	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,10:33:24:0.417:2	0/1:14,10:33:24:0.417:2	0/1:0,6:31:6:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,32:34:32:1.00:2	0/1:0,28:33:28:1.00:2	0/1:31,18:33:49:0.367:2
chr1	202862439	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,5:28:150:0.034:2
chr1	202888947	rs3182429	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,10:29:27:0.370:2	0/1:72,59:30:131:0.450:2	0/1:62,60:29:123:0.492:2	./.	0/1:71,85:30:156:0.545:2	./.	./.	./.	./.
chr1	202910754	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,4:27:63:0.063:2	./.	./.	./.	./.	./.	./.
chr1	202977785	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:33:131:0.031:2	./.
chr1	202977809	rs6678040	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,40:29:85:0.471:2	./.	./.	./.	./.
chr1	202984085	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:90,7:32:97:0.072:2	./.	./.	./.	./.	./.	./.
chr1	202984089	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:32:122:0.033:2	./.	./.	./.	./.	./.
chr1	202984129	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,5:30:82:0.061:2	./.	./.	./.	./.	./.	./.
chr1	202987632	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:120,4:31:124:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr1	202987680	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:147,4:32:151:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr1	202992019	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:180,11:31:191:0.058:2	./.	./.	./.	./.	./.	./.	./.
chr1	203008174	rs61821060	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,20:31:20:1.00:2	0/1:0,5:32:5:1.00:2	./.	0/1:0,9:32:9:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,13:31:13:1.00:2
chr1	203008286	rs10920553	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,19:29:42:0.452:2	0/1:10,7:29:17:0.412:2	./.	0/1:33,33:29:66:0.500:2	0/1:51,40:29:91:0.440:2	0/1:0,77:29:77:1.00:2	0/1:55,43:28:99:0.439:2	0/1:37,40:28:77:0.519:2	0/1:0,48:30:48:1.00:2	0/1:1,38:29:39:0.974:2	0/1:22,30:29:52:0.577:2
chr1	203012543	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:33:114:0.035:2
chr1	203013522	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,25:32:44:0.568:2
chr1	203024767	rs3736314	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,54:32:112:0.482:2	./.
chr1	203025583	rs61748818	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,25:30:63:0.397:2	./.
chr1	203028371	rs61732315	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,7:30:11:0.636:2	0/1:80,70:31:150:0.467:2	0/1:71,55:30:126:0.437:2	./.	./.	./.	./.	./.	./.
chr1	203040816	rs2270540	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,26:32:56:0.473:2	0/1:15,17:32:32:0.531:2	0/1:3,5:33:8:0.625:2	0/1:0,71:32:71:1.00:2	0/1:3,56:32:59:0.949:2	0/1:2,74:32:76:0.974:2	./.	0/1:40,33:32:73:0.452:2	0/1:49,40:33:91:0.449:2	0/1:0,48:33:48:1.00:2	./.
chr1	203053768	rs903356	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:0,76:32:76:1.00:2	0/1:9,14:31:23:0.609:2	0/1:0,128:32:129:1.00:2	0/1:0,167:32:167:1.00:2	0/1:2,169:32:171:0.988:2	0/1:117,73:32:190:0.384:2	0/1:0,185:32:185:1.00:2	0/1:1,122:33:123:0.992:2	0/1:0,140:32:140:1.00:2	0/1:0,137:32:138:1.00:2
chr1	203053787	rs138360992	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,75:30:154:0.487:2	./.	./.	./.	./.	./.	./.	./.
chr1	203054651	rs61745017	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,23:32:44:0.523:2	./.	./.	./.
chr1	203098275	rs2228079	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,49:31:106:0.462:2	./.	0/1:67,72:30:139:0.518:2	0/1:74,80:31:154:0.519:2	./.	./.	./.	./.
chr1	203134203	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:34:133:0.030:2
chr1	203134415	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:27:58:0.069:2	./.	./.	./.	./.	./.
chr1	203140219	rs141527755	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:34:183:0.022:2	./.	./.
chr1	203140671	rs3737875	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,20:32:48:0.417:2	./.	0/1:19,18:32:37:0.486:2
chr1	203143725	rs2642531	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,13:33:26:0.500:2	./.	./.	./.	0/1:81,60:32:142:0.426:2	0/1:69,74:32:143:0.517:2	./.	0/1:98,75:32:173:0.434:2	./.
chr1	203144819	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:32:97:0.041:2	./.	./.	./.	./.	./.
chr1	203144833	rs12145010	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,33:32:66:0.500:2	./.	./.
chr1	203148633	rs4950927	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:29:88:1.00:2	0/1:0,60:29:60:1.00:2	0/1:0,8:28:8:1.00:2	0/1:2,121:30:123:0.984:2	0/1:2,130:31:132:0.985:2	0/1:0,148:30:148:1.00:2	0/1:0,160:30:160:1.00:2	0/1:0,130:30:130:1.00:2	0/1:0,129:31:129:1.00:2	0/1:0,97:30:97:1.00:2	0/1:0,105:29:105:1.00:2
chr1	203152801	rs880633	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:32:73:1.00:2	0/1:0,30:32:30:1.00:2	0/1:5,4:31:9:0.444:2	0/1:0,93:32:93:1.00:2	./.	0/1:0,81:32:81:1.00:2	0/1:61,41:32:102:0.402:2	./.	0/1:2,93:33:95:0.979:2	0/1:49,17:33:66:0.258:2	0/1:0,70:32:70:1.00:2
chr1	203155412	rs111768615	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,15:32:36:0.417:2	./.
chr1	203155703	rs7515776	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:31:8:0.375:2	./.	./.	./.	./.	0/1:51,40:31:92:0.440:2	./.	0/1:40,39:31:79:0.494:2	./.
chr1	203186093	rs1065761	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,19:33:48:0.396:2	./.	./.	./.	0/1:19,31:32:50:0.620:2	0/1:20,18:32:38:0.474:2	./.	0/1:0,47:32:47:1.00:2
chr1	203186947	rs201682373	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,6:33:33:0.182:2	./.	0/1:25,6:32:31:0.194:2	./.	0/1:29,6:31:35:0.171:2	./.	./.
chr1	203186950	rs150192398	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,6:28:34:0.176:2	./.	0/1:25,6:30:31:0.194:2	./.	0/1:29,6:31:35:0.171:2	./.	./.
chr1	203194186	rs2297950	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,32:32:32:1.00:2	./.	0/1:23,20:32:43:0.465:2	./.	0/1:37,25:33:62:0.403:2	0/1:25,22:32:47:0.468:2	./.	0/1:0,43:32:43:1.00:2
chr1	203194834	rs137852607	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,55:32:107:0.514:2	./.	./.
chr1	203317162	rs7543148	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,98:31:98:1.00:2	0/1:0,52:31:52:1.00:2	0/1:6,3:30:9:0.333:2	0/1:58,61:31:119:0.513:2	0/1:0,115:29:115:1.00:2	0/1:2,102:30:104:0.981:2	0/1:81,56:31:137:0.409:2	0/1:5,119:31:124:0.960:2	0/1:53,55:31:108:0.509:2	0/1:0,82:31:82:1.00:2	0/1:0,101:30:101:1.00:2
chr1	203452781	rs2233726	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,25:29:55:0.455:2
chr1	203465335	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,30:32:72:0.417:2	./.
chr1	203467808	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:32:154:0.026:2	./.
chr1	203472043	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,14:31:36:0.389:2	0/1:23,10:31:33:0.303:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	203652444	rs1419114	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:31:79:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,119:30:120:1.00:2	./.	0/1:0,94:30:94:1.00:2	0/1:1,105:30:106:0.991:2	0/1:0,102:30:102:1.00:2	0/1:0,87:30:87:1.00:2	0/1:0,85:30:85:1.00:2	0/1:1,105:30:106:0.991:2
chr1	203667409	rs2228445	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,94:32:95:0.989:2	0/1:0,50:33:50:1.00:2	0/1:1,13:33:14:0.929:2	0/1:0,111:33:111:1.00:2	./.	0/1:0,143:32:143:1.00:2	0/1:1,101:33:102:0.990:2	0/1:0,104:32:104:1.00:2	0/1:0,115:33:115:1.00:2	0/1:0,78:33:78:1.00:2	0/1:1,115:33:117:0.991:2
chr1	203677195	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:33:165:0.024:2	./.	./.	./.	./.
chr1	203689707	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:156,4:31:160:0.025:2	./.	./.	./.	./.	./.	./.
chr1	203691612	rs138580420	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,64:34:141:0.454:2
chr1	203708772	rs41264257	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,67:31:160:0.419:2	./.	./.	./.
chr1	203740057	rs41264259	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,78:33:160:0.488:2	./.	./.	./.
chr1	203743122	rs3820194	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:65,37:34:102:0.363:2	0/1:22,29:32:51:0.569:2	0/1:4,7:32:11:0.636:2	./.	0/1:53,66:32:120:0.555:2	0/1:85,60:32:145:0.414:2	0/1:1,159:32:160:0.994:2	./.	0/1:0,128:33:128:1.00:2	./.	0/1:64,63:33:127:0.496:2
chr1	203743653	rs3766748	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:75,64:32:139:0.460:2	0/1:53,43:32:96:0.448:2	0/1:13,5:30:18:0.278:2	./.	0/1:86,80:31:166:0.482:2	0/1:106,62:31:168:0.369:2	0/1:0,161:31:161:1.00:2	./.	0/1:0,162:32:162:1.00:2	./.	0/1:83,80:32:163:0.491:2
chr1	203743709	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:163,4:31:167:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr1	203743798	rs41264261	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,24:32:59:0.407:2	./.	./.
chr1	203787700	rs17851127	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:31:37:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,46:31:46:1.00:2	0/1:1,47:31:48:0.979:2	0/1:4,55:31:59:0.932:2	0/1:5,68:31:73:0.932:2	0/1:0,67:32:67:1.00:2	0/1:0,48:30:48:1.00:2	0/1:1,57:31:58:0.983:2
chr1	203787734	rs138840191	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:31:129:0.031:2	./.	./.	./.
chr1	203787739	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,6:33:141:0.043:2	./.	./.	./.
chr1	203798684	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:29:198:0.025:2	./.	./.	./.
chr1	203800832	rs144917996	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:32:51:0.078:2	./.	./.	./.	./.	./.
chr1	203816361	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:32:143:0.028:2	./.	./.
chr1	203816506	rs2365981	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:33:85:0.047:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	203816509	rs2365982	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:31:80:0.050:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	203816766	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,4:30:51:0.078:2	./.	./.	./.	./.	./.	./.
chr1	203816788	rs148859249	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,4:30:42:0.095:2	./.	./.	./.	./.	./.	./.
chr1	203816789	rs142558234	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,4:29:41:0.098:2	./.	./.	./.	./.	./.	./.
chr1	203818973	rs41299639	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,3:32:13:0.231:2	./.	./.	0/1:93,99:31:192:0.516:2	0/1:6,170:32:176:0.966:2	./.	0/1:93,87:32:180:0.483:2	./.	0/1:110,82:31:193:0.427:2
chr1	203821314	rs41264265	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:31:14:0.429:2	./.	./.	0/1:65,57:31:122:0.467:2	0/1:25,89:32:115:0.781:2	./.	0/1:66,61:33:127:0.480:2	./.	0/1:77,66:32:143:0.462:2
chr1	203821349	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,12:29:92:0.130:2	./.	0/1:136,6:30:142:0.042:2	./.	./.	./.	./.
chr1	203821424	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,5:34:190:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	203821496	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,6:26:62:0.097:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	203821508	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,5:31:46:0.109:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:32:125:0.032:2
chr1	203830793	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,4:30:112:0.036:2	./.	./.	0/1:185,12:31:197:0.061:2	./.	./.	./.	./.	./.	./.
chr1	203830797	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:189,8:32:197:0.041:2	./.	./.	./.	./.	./.	./.
chr1	203830798	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:191,5:32:196:0.026:2	./.	./.	./.	./.	./.	./.
chr1	203830808	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,4:30:106:0.038:2	./.	./.	0/1:184,13:29:197:0.066:2	./.	./.	./.	./.	./.	0/1:179,4:32:184:0.022:2
chr1	203832854	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.	./.	./.
chr1	204110334	rs10793755	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,43:29:43:1.00:2	0/1:0,27:29:27:1.00:2	./.	0/1:0,53:29:53:1.00:2	0/1:0,37:28:37:1.00:2	0/1:0,48:29:48:1.00:2	0/1:1,35:28:36:0.972:2	0/1:0,40:28:40:1.00:2	0/1:0,40:30:40:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,49:28:49:1.00:2
chr1	204120952	rs3737655	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.
chr1	204159787	rs4889	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.
chr1	204170809	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:32:68:0.059:2	./.
chr1	204172060	rs6689599	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,50:32:126:0.397:2
chr1	204172090	rs13334	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,73:31:144:0.507:2	./.	./.	./.	./.	./.
chr1	204172096	rs6689607	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,43:33:111:0.387:2
chr1	204198209	rs3795571	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,27:31:42:0.643:2	0/1:19,16:30:35:0.457:2	./.	./.	./.	0/1:30,27:30:57:0.474:2	./.	0/1:0,60:30:60:1.00:2	0/1:31,12:32:43:0.279:2	./.	0/1:22,23:30:45:0.511:2
chr1	204199614	rs10900562	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,23:31:45:0.511:2	0/1:13,13:32:26:0.500:2	./.	./.	./.	0/1:22,25:32:47:0.532:2	./.	0/1:0,72:31:72:1.00:2	0/1:25,23:33:48:0.479:2	./.	0/1:14,26:33:40:0.650:2
chr1	204218334	rs200961980	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,13:12:86:0.151:2	0/1:77,11:13:88:0.125:2	./.	0/1:68,5:26:73:0.068:2	./.
chr1	204228810	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:32:107:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	204230581	rs3795569	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:31:94:1.00:2	0/1:1,52:32:53:0.981:2	0/1:0,13:30:13:1.00:2	0/1:82,53:31:135:0.393:2	./.	0/1:70,69:30:139:0.496:2	0/1:5,157:30:162:0.969:2	0/1:92,84:30:176:0.477:2	./.	0/1:56,52:31:108:0.481:2	0/1:0,119:31:119:1.00:2
chr1	204237416	rs10900571	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,41:31:42:0.976:2	0/1:0,23:32:23:1.00:2	0/1:1,11:31:12:0.917:2	0/1:18,24:32:42:0.571:2	0/1:36,46:31:82:0.561:2	0/1:28,35:31:63:0.556:2	0/1:1,56:31:57:0.982:2	0/1:0,79:31:79:1.00:2	0/1:22,42:32:64:0.656:2	0/1:36,16:32:52:0.308:2	0/1:1,48:30:49:0.980:2
chr1	204242838	rs33911350	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,33:32:76:0.440:2	0/1:34,22:32:56:0.393:2	0/1:2,11:33:13:0.846:2	0/1:63,36:32:99:0.364:2	./.	./.	0/1:3,107:32:110:0.973:2	./.	./.	0/1:47,34:30:81:0.420:2	./.
chr1	204379452	rs2089891	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,23:34:46:0.500:2	./.	./.	./.	./.	0/1:16,29:34:45:0.644:2	./.	0/1:16,28:32:44:0.636:2
chr1	204379532	rs11799830	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,4:31:19:0.211:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	204379617	rs3014626	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,134:32:135:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,135:33:135:1.00:2	0/1:0,138:31:138:1.00:2	0/1:0,118:32:118:1.00:2	0/1:0,138:33:138:1.00:2	0/1:0,109:32:109:1.00:2	0/1:0,127:34:128:1.00:2	0/1:0,127:32:127:1.00:2	0/1:82,66:31:148:0.446:2
chr1	204396830	rs17334387	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,29:32:81:0.358:2	./.	./.	0/1:56,24:31:80:0.300:2	./.	0/1:53,42:32:95:0.442:2	./.	0/1:37,37:31:74:0.500:2
chr1	204399061	rs2271419	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,8:29:29:0.276:2	./.	./.	0/1:17,9:31:26:0.346:2	./.	0/1:21,10:32:31:0.323:2	./.	0/1:13,4:32:17:0.235:2
chr1	204399064	rs2271420	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,8:31:30:0.267:2	./.	./.	0/1:18,9:31:27:0.333:2	./.	0/1:24,10:33:34:0.294:2	./.	0/1:13,4:32:17:0.235:2
chr1	204403659	rs3747636	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,74:30:171:0.433:2	./.	./.	0/1:4,181:29:186:0.978:2	0/1:105,83:30:188:0.441:2	0/1:109,69:31:178:0.388:2	./.	0/1:74,84:29:158:0.532:2
chr1	204423811	rs61762608	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,7:31:16:0.438:2
chr1	204425028	rs3765156	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,31:29:72:0.431:2	./.	./.	0/1:56,47:30:103:0.456:2	0/1:54,39:29:93:0.419:2	0/1:45,49:30:94:0.521:2	./.	./.
chr1	204425080	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:31:112:0.036:2	./.	./.	./.
chr1	204426183	rs61762602	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,21:31:79:0.266:2	./.	./.	./.	./.	./.
chr1	204426879	rs115137673	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:35:77:0.053:2	./.	./.
chr1	204434438	rs45492196	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,13:31:23:0.565:2	0/1:84,71:32:155:0.458:2	./.	./.	./.	./.	./.	./.	./.
chr1	204436066	rs16853773	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,37:31:80:0.463:2	./.	./.	0/1:21,15:31:36:0.417:2	0/1:48,27:31:75:0.360:2	0/1:34,23:31:57:0.404:2	./.	./.
chr1	204438334	rs1124777	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:1,22:31:23:0.957:2	0/1:0,7:32:7:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,57:32:57:1.00:2	0/1:1,38:32:39:0.974:2	0/1:0,45:33:45:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,50:33:50:1.00:2	0/1:30,19:33:49:0.388:2
chr1	204438643	rs1553921	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,107:29:107:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,104:28:104:1.00:2	0/1:0,110:28:110:1.00:2	0/1:0,124:29:124:1.00:2	0/1:0,155:29:155:1.00:2	0/1:6,135:29:141:0.957:2	0/1:0,112:30:112:1.00:2	0/1:0,98:29:98:1.00:2	0/1:66,59:29:125:0.472:2
chr1	204501383	rs4252697	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:34,50:30:84:0.595:2	0/1:26,34:31:60:0.567:2	./.	0/1:51,28:30:79:0.354:2	./.	./.	0/1:49,23:31:72:0.319:2	0/1:1,94:31:95:0.989:2	0/1:52,38:32:90:0.422:2	./.	./.
chr1	204518499	rs61754765	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,40:33:67:0.597:2
chr1	204587047	rs11588857	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:44,37:32:82:0.457:2	0/1:21,30:32:51:0.588:2	./.	0/1:57,49:32:106:0.462:2	./.	./.	0/1:54,33:32:87:0.379:2	0/1:64,47:31:111:0.423:2	0/1:58,48:32:106:0.453:2	./.	./.
chr1	204587178	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,25:30:60:0.417:2	./.
chr1	204587240	rs3747632	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,21:31:39:0.538:2	0/1:13,17:30:30:0.567:2	0/1:0,11:31:11:1.00:2	0/1:27,40:30:67:0.597:2	./.	./.	0/1:39,46:32:85:0.541:2	./.	0/1:40,25:30:65:0.385:2	0/1:27,22:32:49:0.449:2	./.
chr1	204587569	rs3747631	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:24,17:32:41:0.415:2	0/1:27,17:32:45:0.386:2	./.	0/1:52,39:32:91:0.429:2	./.	./.	0/1:43,57:32:100:0.570:2	0/1:56,37:32:93:0.398:2	0/1:31,30:33:61:0.492:2	./.	./.
chr1	204587589	rs76468836	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,25:30:47:0.532:2	./.
chr1	204588140	rs3747630	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:49,43:29:92:0.467:2	0/1:30,33:29:63:0.524:2	./.	0/1:63,59:29:122:0.484:2	./.	./.	0/1:93,89:29:183:0.489:2	0/1:89,87:29:176:0.494:2	0/1:57,50:30:107:0.467:2	./.	./.
chr1	204588668	rs34224191	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,37:30:78:0.474:2	./.	./.	./.	./.	./.	./.	./.
chr1	204588700	rs201287849	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,14:17:68:0.206:2	./.	./.	./.	./.	./.
chr1	204588926	rs35463653	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,30:32:73:0.411:2
chr1	204589101	rs3789044	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:29,34:29:63:0.540:2	0/1:28,25:30:53:0.472:2	./.	0/1:53,51:29:104:0.490:2	./.	./.	0/1:49,54:28:103:0.524:2	0/1:42,47:28:89:0.528:2	0/1:53,57:30:110:0.518:2	./.	./.
chr1	204589222	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,40:32:95:0.421:2	./.
chr1	204589623	rs1809276	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,13:32:27:0.481:2	./.	./.	./.
chr1	204590044	rs7539399	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:31:47:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,32:31:32:1.00:2	0/1:14,14:31:28:0.500:2	./.	0/1:0,19:31:19:1.00:2	0/1:29,18:30:47:0.383:2	0/1:0,38:32:38:1.00:2	0/1:0,29:30:29:1.00:2	0/1:32,29:31:61:0.475:2
chr1	204590200	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:32:38:0.105:2
chr1	204590616	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:34:168:0.024:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	204591237	rs884108	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,187:29:187:1.00:2	0/1:1,100:28:101:0.990:2	0/1:0,36:29:36:1.00:2	0/1:5,181:29:186:0.973:2	0/1:113,86:29:199:0.432:2	./.	0/1:0,196:29:196:1.00:2	0/1:106,86:29:192:0.448:2	0/1:0,185:30:185:1.00:2	0/1:0,189:29:189:1.00:2	0/1:0,182:29:183:1.00:2
chr1	204943362	rs147248519	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,29:29:72:0.403:2	./.	./.	./.	./.	./.
chr1	204943947	rs2246662	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:33,22:31:55:0.400:2	0/1:9,9:31:18:0.500:2	./.	./.	0/1:0,34:29:34:1.00:2	./.	0/1:0,44:29:44:1.00:2	0/1:2,59:29:61:0.967:2	./.	./.	0/1:20,22:30:42:0.524:2
chr1	204944474	rs202061387	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,18:11:84:0.214:2	./.	./.	./.	./.	0/1:109,21:13:130:0.162:2	./.	./.	./.	./.	0/1:61,12:14:73:0.164:2
chr1	204945934	rs6657372	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,16:30:36:0.444:2	0/1:18,15:29:33:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	204948659	rs6667532	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,43:29:76:0.566:2	0/1:24,21:30:45:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	204953237	rs370114778	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,39:33:103:0.379:2	./.	./.
chr1	204966428	rs2802808	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:116,72:31:188:0.383:2	./.	./.	./.	./.	0/1:75,87:32:162:0.537:2	./.
chr1	204970302	rs4951151	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,63:30:139:0.453:2	./.	0/1:69,75:30:144:0.521:2	./.	./.	0/1:80,45:31:125:0.360:2	0/1:47,54:31:101:0.535:2	./.
chr1	204978704	rs55678495	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,20:32:39:0.513:2	./.	./.	./.	./.	0/1:18,32:32:50:0.640:2	0/1:16,20:32:36:0.556:2	0/1:20,27:32:47:0.574:2
chr1	204985478	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,4:30:93:0.043:2	./.	./.	./.	./.	./.	./.
chr1	204985634	rs143897854	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,49:30:115:0.426:2	./.	./.	./.	./.	./.	./.
chr1	205027390	rs9787172	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,68:31:117:0.581:2	./.	./.	0/1:83,74:31:157:0.471:2	./.	0/1:80,52:32:133:0.394:2	./.	./.
chr1	205027737	rs2275697	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,6:31:23:0.261:2	./.	./.	0/1:0,17:30:17:1.00:2	./.	0/1:19,8:32:27:0.296:2	./.	./.
chr1	205027790	rs114050151	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,4:29:21:0.190:2	./.	./.	0/1:6,7:32:13:0.538:2	./.	./.	./.	./.
chr1	205028351	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:32:160:0.025:2	./.	./.	./.	./.
chr1	205031116	rs2229866	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,11:30:17:0.647:2	./.	./.	0/1:0,16:29:16:1.00:2	./.	0/1:0,25:33:25:1.00:2	./.	./.
chr1	205036252	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:33:100:0.040:2	./.	./.	./.	./.	./.
chr1	205041158	rs2229868	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,41:31:93:0.441:2	0/1:77,42:31:119:0.353:2	0/1:45,60:31:105:0.571:2	0/1:2,105:32:108:0.981:2	./.	0/1:47,39:32:86:0.453:2	0/1:46,41:31:87:0.471:2	./.
chr1	205042237	rs56111335	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,44:33:98:0.449:2	0/1:32,22:32:54:0.407:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	205042840	rs17416074	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,20:32:39:0.513:2	./.	./.	./.	./.	0/1:28,23:32:51:0.451:2	./.	./.
chr1	205052723	rs10494858	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,62:30:136:0.456:2	./.	./.	./.	./.	0/1:62,76:31:138:0.551:2	./.	./.
chr1	205052939	rs4950979	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,28:32:68:0.412:2	0/1:16,19:32:35:0.543:2	0/1:0,8:31:8:1.00:2	0/1:0,50:31:50:1.00:2	0/1:20,20:31:40:0.500:2	0/1:0,48:31:48:1.00:2	0/1:1,47:31:48:0.979:2	0/1:28,25:31:53:0.472:2	0/1:1,64:32:65:0.985:2	0/1:0,46:32:46:1.00:2	0/1:47,40:32:87:0.460:2
chr1	205053150	rs16855059	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,36:33:62:0.581:2	./.	./.	./.	./.	0/1:38,34:33:72:0.472:2	./.	./.
chr1	205053219	rs4951168	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,49:33:80:0.613:2	0/1:24,28:33:52:0.538:2	0/1:0,7:31:7:1.00:2	0/1:1,73:32:74:0.986:2	0/1:51,23:32:74:0.311:2	0/1:0,65:32:65:1.00:2	0/1:0,71:32:71:1.00:2	0/1:33,42:32:75:0.560:2	0/1:0,89:32:89:1.00:2	0/1:1,51:31:52:0.981:2	0/1:34,40:33:74:0.541:2
chr1	205053407	rs145742596	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,76:31:127:0.598:2	./.
chr1	205070733	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:34:109:0.037:2	./.	./.
chr1	205073022	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:31:55:0.073:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	205129319	rs1062715	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,71:31:159:0.447:2	./.	./.	./.	./.	0/1:0,163:32:163:1.00:2	./.	./.
chr1	205130413	rs3851294	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,29:28:55:0.527:2	0/1:12,37:30:49:0.755:2	0/1:0,8:31:8:1.00:2	0/1:1,82:29:83:0.988:2	0/1:13,11:27:24:0.458:2	0/1:0,58:29:58:1.00:2	0/1:0,53:28:53:1.00:2	0/1:0,74:29:74:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,44:29:44:1.00:2	0/1:40,41:29:81:0.506:2
chr1	205197808	rs112979653	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,32:30:64:0.500:2	./.	./.	./.	./.	./.	./.
chr1	205210806	rs146869196	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,71:32:135:0.526:2	./.	./.	./.	./.	./.	./.
chr1	205225457	rs1172147	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,35:32:65:0.538:2	0/1:26,18:32:44:0.409:2	0/1:0,6:29:6:1.00:2	0/1:44,26:31:70:0.371:2	./.	0/1:32,33:31:65:0.508:2	./.	0/1:48,27:31:75:0.360:2	./.	0/1:31,28:31:59:0.475:2	0/1:42,28:31:70:0.400:2
chr1	205238275	rs1768586	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,25:30:25:1.00:2	0/1:79,74:30:153:0.484:2	./.	0/1:66,84:30:150:0.560:2	./.	0/1:73,99:31:172:0.576:2	./.	0/1:87,66:29:153:0.431:2	0/1:90,64:31:155:0.416:2
chr1	205238530	rs1779411	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:30:2:1.00:2	0/1:1,6:28:7:0.857:2	./.	0/1:9,9:27:18:0.500:2	./.	0/1:3,5:30:8:0.625:2	./.	0/1:6,5:29:11:0.455:2	0/1:0,3:17:3:1.00:2
chr1	205238717	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,25:33:46:0.543:2	0/1:9,11:33:20:0.550:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	205240251	rs1668867	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,16:30:41:0.390:2	./.	0/1:22,22:30:44:0.500:2	./.	0/1:33,37:30:70:0.529:2	./.	0/1:21,11:32:33:0.344:2	0/1:20,22:32:42:0.524:2
chr1	205272926	rs1106201	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,5:31:18:0.278:2	./.	0/1:10,4:27:14:0.286:2	0/1:1,7:29:8:0.875:2	./.
chr1	205272983	rs1106202	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,18:31:48:0.375:2	./.	0/1:23,20:31:43:0.465:2	0/1:12,17:32:29:0.586:2	./.
chr1	205273142	rs41264881	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,35:30:65:0.538:2	./.	./.	0/1:33,34:29:67:0.507:2	./.	./.	0/1:41,39:30:80:0.488:2
chr1	205275421	rs4951197	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:33:40:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,56:33:56:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,62:31:62:1.00:2
chr1	205277781	rs2275868	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,87:30:173:0.503:2	./.	./.	./.	./.
chr1	205306590	rs3210952	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:41,40:33:81:0.494:2	0/1:28,24:32:52:0.462:2	0/1:6,3:33:9:0.333:2	./.	./.	0/1:55,60:33:115:0.522:2	./.	./.	./.	0/1:49,46:32:95:0.484:2	./.
chr1	205308335	rs1105385	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,12:31:33:0.364:2	./.	0/1:20,17:31:37:0.459:2	0/1:22,10:31:32:0.313:2	0/1:26,18:32:44:0.409:2	0/1:17,12:33:29:0.414:2	0/1:13,15:32:28:0.536:2	0/1:16,14:32:30:0.467:2
chr1	205308347	rs1105386	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,11:30:38:0.289:2	./.	./.	./.	./.
chr1	205308368	rs1105387	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,20:31:54:0.370:2	./.	0/1:20,26:30:46:0.565:2	0/1:32,16:31:48:0.333:2	0/1:25,28:31:53:0.528:2	0/1:22,18:31:40:0.450:2	0/1:19,26:31:45:0.578:2	0/1:20,22:30:42:0.524:2
chr1	205308458	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:30:70:0.057:2	./.	./.	./.	./.	./.
chr1	205308914	rs116078922	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,10:20:73:0.137:2	0/1:81,13:16:94:0.138:2	0/1:51,13:23:64:0.203:2	0/1:79,15:16:95:0.160:2	0/1:66,17:17:83:0.205:2	./.	./.	./.
chr1	205350790	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:30:141:0.028:2	./.	./.	./.	./.	./.
chr1	205353492	rs2274702	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,30:32:58:0.517:2	0/1:30,28:30:58:0.483:2
chr1	205388370	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:31:127:0.031:2	./.	./.	./.	./.
chr1	205492679	rs4623769	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:26,56:32:82:0.683:2	0/1:24,18:32:42:0.429:2	./.	./.	./.	./.	./.	0/1:40,37:32:77:0.481:2	./.	./.	./.
chr1	205492756	rs7529442	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:31:96:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,100:31:100:1.00:2	0/1:0,88:30:88:1.00:2	0/1:1,115:30:116:0.991:2	0/1:72,34:29:106:0.321:2	0/1:0,140:30:140:1.00:2	0/1:1,109:31:110:0.991:2	0/1:0,89:29:89:1.00:2	0/1:2,60:28:62:0.968:2
chr1	205495233	rs17850752	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:31:16:0.563:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	205495976	rs1544154	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,112:30:112:1.00:2	0/1:0,64:30:64:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,123:30:123:1.00:2	0/1:0,144:30:144:1.00:2	0/1:0,111:30:111:1.00:2	0/1:2,169:31:171:0.988:2	0/1:0,161:29:161:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,110:31:110:1.00:2	0/1:0,101:30:101:1.00:2
chr1	205548956	rs112374673	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,16:31:28:0.571:2	./.	./.	./.	./.	./.	./.	./.	0/1:70,63:32:133:0.474:2
chr1	205554085	rs7526132	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,19:32:50:0.380:2	0/1:23,23:32:46:0.500:2	0/1:1,6:33:7:0.857:2	0/1:26,28:33:54:0.519:2	0/1:35,25:31:60:0.417:2	0/1:1,83:32:84:0.988:2	0/1:49,31:32:80:0.388:2	0/1:57,41:32:98:0.418:2	0/1:41,43:32:84:0.512:2	0/1:45,31:32:76:0.408:2	./.
chr1	205554095	rs7515820	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,17:32:45:0.378:2	0/1:22,20:32:42:0.476:2	0/1:1,6:30:7:0.857:2	0/1:24,27:33:51:0.529:2	0/1:24,23:29:47:0.489:2	0/1:1,73:32:75:0.986:2	0/1:45,27:31:72:0.375:2	0/1:54,33:31:87:0.379:2	0/1:39,41:33:80:0.513:2	0/1:37,28:32:65:0.431:2	./.
chr1	205561372	rs7529077	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,11:31:26:0.423:2	./.	./.	0/1:86,72:30:158:0.456:2	0/1:83,64:31:147:0.435:2	./.	0/1:85,88:31:173:0.509:2	0/1:73,75:31:148:0.507:2	./.
chr1	205569596	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,23:32:71:0.324:2	./.	./.	./.	./.	./.	./.
chr1	205589007	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:32:122:0.033:2
chr1	205589574	rs1064406	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,39:33:72:0.542:2	./.	./.	./.
chr1	205628442	rs151018622	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,75:31:154:0.487:2
chr1	205632563	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,3:33:50:0.060:2	./.	./.
chr1	205693063	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:31:108:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	205740611	rs200445820	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,76:32:145:0.524:2
chr1	205767885	rs708727	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,83:31:188:0.441:2	./.	0/1:86,101:32:187:0.540:2	0/1:8,178:31:186:0.957:2	0/1:1,190:31:191:0.995:2	./.	0/1:0,172:32:172:1.00:2	0/1:96,92:31:189:0.489:2
chr1	205779231	rs11240569	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,8:32:13:0.615:2	./.	0/1:0,109:32:109:1.00:2	./.	./.	./.	0/1:48,47:32:95:0.495:2	./.	0/1:29,29:33:58:0.500:2
chr1	205801872	rs1361754	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:31,28:33:59:0.475:2	0/1:28,18:33:46:0.391:2	./.	0/1:60,47:32:107:0.439:2	./.	0/1:61,39:32:100:0.390:2	0/1:2,75:32:77:0.974:2	0/1:1,90:31:91:0.989:2	./.	0/1:0,71:32:71:1.00:2	0/1:55,35:32:90:0.389:2
chr1	205810947	rs11240573	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,84:33:192:0.438:2	./.	./.
chr1	205811828	rs4951025	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:2,81:33:83:0.976:2	0/1:1,32:32:33:0.970:2	0/1:3,9:32:12:0.750:2	./.	./.	./.	./.	./.	0/1:51,41:33:92:0.446:2	./.	./.
chr1	205812912	rs7518979	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,20:32:49:0.408:2
chr1	205814485	rs1104899	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:16,17:32:33:0.515:2	0/1:14,14:32:28:0.500:2	0/1:1,4:31:5:0.800:2	./.	0/1:43,27:31:70:0.386:2	0/1:36,29:31:65:0.446:2	./.	./.	0/1:32,25:32:57:0.439:2	./.	0/1:24,15:32:39:0.385:2
chr1	205814497	rs1891460	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:29:35:1.00:2	0/1:0,25:28:25:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,51:30:51:1.00:2	0/1:1,72:30:73:0.986:2	0/1:0,57:29:57:1.00:2	0/1:1,67:29:68:0.985:2	0/1:0,82:30:82:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,38:29:38:1.00:2
chr1	205814586	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:31:106:0.038:2	./.	./.	./.
chr1	205817018	rs11540015	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,9:29:30:0.300:2	./.	0/1:152,43:29:195:0.221:2	./.	./.	./.	0/1:141,55:30:196:0.281:2	./.	./.
chr1	205819039	rs11540016	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,8:30:10:0.800:2	./.	0/1:49,39:30:88:0.443:2	./.	./.	./.	0/1:47,29:31:76:0.382:2	./.	./.
chr1	205819104	rs11540014	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,10:28:15:0.667:2	./.	0/1:103,89:28:192:0.464:2	./.	./.	./.	0/1:104,68:28:172:0.395:2	./.	./.
chr1	205884062	rs9438438	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,64:30:124:0.516:2	0/1:48,46:29:94:0.489:2	./.	./.
chr1	205884274	rs6669481	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,50:28:100:0.500:2	0/1:33,43:29:76:0.566:2	./.	./.
chr1	205886413	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.	./.
chr1	205887981	rs16856462	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,40:30:74:0.541:2
chr1	205889329	rs16856470	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,77:30:156:0.494:2
chr1	205890925	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,46:33:111:0.414:2	./.	./.
chr1	205895666	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:33:71:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	205896647	rs34803033	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,53:28:114:0.465:2
chr1	205901000	rs33943971	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,57:32:143:0.399:2
chr1	205901102	rs200068898	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,71:32:157:0.452:2	0/1:58,49:32:107:0.458:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	205904901	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:31:107:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	206145468	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:31:198:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	206145519	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,5:33:199:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	206153993	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,8:31:191:0.042:2	./.	./.	./.
chr1	206230958	rs28632197	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,12:27:15:0.800:2	./.	./.	./.	./.	./.	./.	./.
chr1	206230986	rs28676508	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,16:30:20:0.800:2	./.	./.	./.	./.	./.	./.	./.
chr1	206317568	rs73074812	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,23:31:39:0.590:2	./.	./.	./.	./.
chr1	206318432	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:32:75:0.053:2	./.
chr1	206319119	rs57621203	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,82:32:194:0.423:2	./.	./.	./.	./.
chr1	206327510	rs61742539	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,111:30:114:0.974:2	0/1:35,52:30:87:0.598:2	0/1:55,50:29:105:0.476:2	0/1:47,43:29:90:0.478:2	./.	./.	./.	./.
chr1	206328803	rs41302235	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,148:32:148:1.00:2	0/1:91,57:32:148:0.385:2	0/1:74,65:32:139:0.468:2	0/1:77,53:32:130:0.408:2	./.	./.	./.	./.
chr1	206516261	rs201036189	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:128,63:31:191:0.330:2	0/1:144,54:31:198:0.273:2	0/1:98,42:31:140:0.300:2	0/1:148,48:32:196:0.245:2	0/1:133,61:30:194:0.314:2	0/1:128,69:31:197:0.350:2	0/1:140,55:31:195:0.282:2	0/1:141,56:31:197:0.284:2	0/1:108,87:32:196:0.446:2	0/1:141,57:32:198:0.288:2	0/1:131,61:30:192:0.318:2
chr1	206566048	.	G	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:142,51:30:194:0.264:2	0/1:90,41:31:131:0.313:2	0/1:32,11:32:43:0.256:2	0/1:133,62:31:196:0.318:2	0/1:141,57:30:198:0.288:2	0/1:139,58:31:197:0.294:2	0/1:153,45:31:198:0.227:2	0/1:158,33:30:191:0.173:2	0/1:136,59:31:196:0.303:2	0/1:146,50:31:196:0.255:2	0/1:135,54:30:189:0.286:2
chr1	206566195	rs200978831	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:166,24:32:190:0.126:2	0/1:161,29:32:190:0.153:2	0/1:86,25:31:111:0.225:2	0/1:165,29:32:194:0.149:2	0/1:162,35:32:197:0.178:2	0/1:159,39:32:198:0.197:2	0/1:173,27:32:200:0.135:2	./.	0/1:164,25:33:189:0.132:2	0/1:166,26:32:192:0.135:2	0/1:172,20:33:192:0.104:2
chr1	206566199	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,19:33:189:0.101:2	0/1:172,21:32:193:0.109:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	206566903	rs2987927	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:154,10:31:164:0.061:2	./.	./.	0/1:137,12:31:149:0.081:2	./.	./.	./.	./.	./.	0/1:159,9:32:168:0.054:2	./.
chr1	206566904	rs2919105	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:68,98:32:166:0.590:2	0/1:53,53:32:106:0.500:2	0/1:22,13:32:35:0.371:2	0/1:70,78:32:148:0.527:2	0/1:100,93:32:193:0.482:2	0/1:97,96:31:193:0.497:2	0/1:83,108:32:191:0.565:2	0/1:81,114:32:195:0.585:2	0/1:92,102:33:194:0.526:2	0/1:66,105:32:171:0.614:2	0/1:87,108:32:195:0.554:2
chr1	206578650	.	G	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:92,96:33:188:0.511:2	0/1:61,58:32:119:0.487:2	0/1:13,17:33:30:0.567:2	0/1:100,75:33:175:0.429:2	0/1:97,83:33:180:0.461:2	0/1:120,65:33:185:0.351:2	0/1:99,90:33:189:0.476:2	0/1:111,64:33:175:0.366:2	0/1:98,80:34:178:0.449:2	0/1:119,69:33:188:0.367:2	0/1:81,81:33:162:0.500:2
chr1	206579737	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,14:14:160:0.088:2
chr1	206579798	rs200703951	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:104,84:31:188:0.447:2	0/1:102,81:30:183:0.443:2	0/1:44,25:29:69:0.362:2	0/1:96,94:30:190:0.495:2	0/1:102,90:29:192:0.469:2	0/1:91,96:30:187:0.513:2	0/1:100,99:30:199:0.497:2	0/1:105,85:30:190:0.447:2	0/1:100,87:31:187:0.465:2	0/1:94,80:30:175:0.460:2	0/1:98,86:31:184:0.467:2
chr1	206603535	rs2297539	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:22,21:31:43:0.488:2	0/1:18,12:32:30:0.400:2	0/1:2,4:29:6:0.667:2	./.	0/1:23,13:32:36:0.361:2	0/1:22,45:31:67:0.672:2	./.	0/1:36,46:31:82:0.561:2	./.	./.	0/1:62,25:32:87:0.287:2
chr1	206626607	rs11120575	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:47,39:29:86:0.453:2	0/1:44,36:31:80:0.450:2	./.	0/1:1,117:29:118:0.992:2	0/1:57,57:30:114:0.500:2	0/1:55,54:30:109:0.495:2	0/1:89,69:30:158:0.437:2	0/1:81,63:30:144:0.438:2	0/1:0,149:30:149:1.00:2	0/1:0,130:30:130:1.00:2	0/1:78,74:30:152:0.487:2
chr1	206634429	rs17018890	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,13:32:14:0.929:2	0/1:17,9:32:26:0.346:2	0/1:9,10:31:19:0.526:2	./.	0/1:3,5:32:8:0.625:2	./.
chr1	206634516	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,15:31:35:0.429:2	./.
chr1	206647742	rs1539242	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:32:95:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,131:33:131:1.00:2	0/1:0,132:32:132:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,111:33:111:1.00:2	0/1:0,88:33:88:1.00:2	0/1:0,85:33:85:1.00:2
chr1	206647787	rs1539243	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,11:30:15:0.733:2	0/1:0,162:30:162:1.00:2	./.	0/1:0,109:29:109:1.00:2	0/1:0,139:30:139:1.00:2	0/1:0,153:29:153:1.00:2	0/1:0,120:30:120:1.00:2	0/1:0,107:30:107:1.00:2	0/1:0,90:29:90:1.00:2
chr1	206650065	rs41296034	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,57:33:112:0.509:2	0/1:85,75:32:160:0.469:2	./.	./.	0/1:53,55:32:108:0.509:2	./.
chr1	206651107	rs2297545	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,19:32:49:0.388:2	./.	0/1:34,27:33:61:0.443:2	./.	./.	./.
chr1	206665758	rs17024805	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,105:32:191:0.550:2	./.	./.	./.
chr1	206665896	rs2336940	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,112:32:112:1.00:2	0/1:1,65:32:66:0.985:2	./.	0/1:1,113:32:114:0.991:2	0/1:0,112:32:114:1.00:2	0/1:0,98:32:98:1.00:2	0/1:0,113:33:113:1.00:2	0/1:5,142:33:147:0.966:2	0/1:0,135:33:135:1.00:2	0/1:0,109:33:110:1.00:2	./.
chr1	206665916	rs41299860	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,67:29:134:0.500:2	./.	./.	./.
chr1	206666368	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:31:95:0.042:2	./.	./.	./.	./.	./.
chr1	206669465	rs3748022	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,78:33:167:0.467:2	0/1:83,62:33:145:0.428:2	./.
chr1	206680983	rs2095124	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	0/1:2,2:33:4:0.500:2	0/1:0,2:32:2:1.00:2	0/1:1,3:32:4:0.750:2	./.	0/1:0,2:31:2:1.00:2	./.
chr1	206711610	rs79017047	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:49,29:29:78:0.372:2	0/1:22,19:31:41:0.463:2	./.	./.	0/1:60,55:29:115:0.478:2	./.	./.	./.	./.	./.	./.
chr1	206757857	rs4845112	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,27:31:79:0.342:2	./.
chr1	206758579	rs146761578	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,26:34:53:0.491:2	./.
chr1	206773090	rs199944579	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,36:32:56:0.643:2	./.	./.	./.	./.	./.
chr1	206773659	rs6662929	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,139:30:139:1.00:2	0/1:1,81:30:82:0.988:2	0/1:0,30:30:30:1.00:2	0/1:0,152:31:152:1.00:2	0/1:2,122:30:124:0.984:2	0/1:0,159:30:159:1.00:2	0/1:1,163:30:164:0.994:2	0/1:1,167:30:168:0.994:2	0/1:0,168:31:168:1.00:2	0/1:0,123:31:123:1.00:2	0/1:0,148:30:148:1.00:2
chr1	206811001	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,4:32:49:0.082:2	./.	./.	./.	./.	./.	./.	./.
chr1	206905043	rs4073250	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,5:33:14:0.357:2	./.	./.	./.	./.	0/1:100,81:32:181:0.448:2	0/1:0,129:33:129:1.00:2	./.	./.
chr1	206905952	rs372815549	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,93:33:179:0.520:2	./.	./.
chr1	206944257	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:32:106:0.038:2	./.	./.
chr1	207013240	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,69:31:166:0.416:2	./.	./.	./.	./.
chr1	207015957	rs2243191	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:32:45:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,4:33:4:1.00:2	0/1:26,26:32:52:0.500:2	0/1:1,26:31:28:0.963:2	0/1:42,37:33:79:0.468:2	0/1:0,63:33:63:1.00:2	0/1:1,53:32:54:0.981:2	0/1:25,32:33:57:0.561:2	./.	0/1:0,72:33:72:1.00:2
chr1	207073701	rs142816743	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:31:5:0.800:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	207074905	rs1150258	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:53,66:31:119:0.555:2	0/1:46,42:32:88:0.477:2	./.	0/1:1,165:32:166:0.994:2	0/1:134,4:34:138:0.029:2	./.	0/1:78,61:31:139:0.439:2	0/1:91,93:32:186:0.505:2	0/1:3,155:32:158:0.981:2	0/1:56,57:32:113:0.504:2	0/1:2,187:31:189:0.989:2
chr1	207087435	rs167082	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:15,10:33:25:0.400:2	0/1:7,14:32:21:0.667:2	./.	0/1:0,48:32:48:1.00:2	./.	./.	0/1:24,22:32:46:0.478:2	0/1:14,17:30:31:0.548:2	0/1:0,57:33:57:1.00:2	0/1:13,12:32:25:0.480:2	0/1:0,43:31:43:1.00:2
chr1	207109116	rs2275531	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:22,21:32:43:0.488:2	0/1:20,11:32:31:0.355:2	./.	0/1:0,108:32:108:1.00:2	./.	./.	0/1:60,48:32:108:0.444:2	0/1:55,54:31:109:0.495:2	0/1:0,81:32:81:1.00:2	0/1:51,26:31:77:0.338:2	0/1:0,54:32:54:1.00:2
chr1	207110936	rs291096	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:64,52:33:116:0.448:2	0/1:20,30:32:50:0.600:2	./.	0/1:0,136:33:136:1.00:2	./.	./.	0/1:87,87:33:174:0.500:2	0/1:70,70:32:141:0.500:2	0/1:1,154:33:155:0.994:2	0/1:58,42:31:100:0.420:2	0/1:5,104:33:109:0.954:2
chr1	207132345	rs7556372	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:16,15:31:31:0.484:2	0/1:2,10:31:12:0.833:2	./.	0/1:0,24:30:24:1.00:2	./.	./.	0/1:9,6:32:15:0.400:2	0/1:25,22:30:47:0.468:2	0/1:0,31:30:31:1.00:2	0/1:15,13:30:28:0.464:2	0/1:0,37:31:37:1.00:2
chr1	207133093	rs151021758	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,20:33:40:0.500:2	0/1:24,15:33:39:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	207135723	rs188207561	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,48:30:106:0.453:2	./.	./.	./.	./.	./.
chr1	207140440	rs11119933	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,31:33:92:0.341:2	./.	0/1:52,43:32:95:0.453:2
chr1	207143422	rs1856746	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:46,44:28:90:0.489:2	0/1:21,26:29:47:0.553:2	./.	0/1:0,141:29:141:1.00:2	./.	./.	0/1:62,42:29:104:0.404:2	0/1:89,64:30:153:0.418:2	0/1:0,121:29:121:1.00:2	0/1:74,37:27:111:0.333:2	0/1:0,81:28:81:1.00:2
chr1	207195653	rs373955367	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:29:194:0.026:2	./.	./.
chr1	207195779	rs2842726	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:32:81:1.00:2	0/1:0,40:32:41:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,76:33:77:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,99:33:99:1.00:2
chr1	207195808	rs35267170	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,42:32:61:0.689:2	./.	./.	./.	./.	./.
chr1	207196067	rs190635695	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,31:32:50:0.620:2	./.	./.	./.	./.
chr1	207236528	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:32:168:0.024:2	./.	./.
chr1	207238419	rs72741390	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:45,33:32:78:0.423:2	0/1:26,12:31:38:0.316:2	./.	0/1:4,93:31:97:0.959:2	./.	0/1:46,45:30:91:0.495:2	0/1:53,36:30:89:0.404:2	0/1:87,49:31:136:0.360:2	0/1:51,52:31:103:0.505:2	./.	./.
chr1	207240863	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:28:54:0.074:2	./.	./.	./.	./.	./.
chr1	207244853	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:161,4:34:165:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr1	207269919	rs8942	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,27:33:62:0.435:2	0/1:24,25:32:49:0.510:2	./.	./.	./.	0/1:72,30:31:102:0.294:2	./.	./.	./.	./.	./.
chr1	207297680	rs1126618	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,5:27:12:0.417:2	0/1:13,3:29:16:0.188:2	./.	0/1:12,8:29:20:0.400:2	0/1:0,13:29:13:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,11:29:11:1.00:2	0/1:20,13:28:33:0.394:2	0/1:17,17:31:34:0.500:2	./.	0/1:0,29:28:29:1.00:2
chr1	207304900	rs4844573	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:40,41:31:81:0.506:2	0/1:15,22:32:37:0.595:2	0/1:1,3:32:4:0.750:2	./.	0/1:20,28:32:48:0.583:2	./.	0/1:0,77:32:78:1.00:2	./.	./.	./.	./.
chr1	207317207	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:30:142:0.028:2	./.	./.	./.	./.
chr1	207646322	rs1048971	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:31:5:1.00:2	./.	0/1:40,30:29:70:0.429:2	./.	0/1:3,73:30:76:0.961:2	0/1:71,39:30:110:0.355:2	./.	./.	./.
chr1	207646462	rs17615	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:30:8:1.00:2	./.	./.	./.	0/1:0,89:31:89:1.00:2	./.	./.	./.	./.
chr1	207646898	rs4308977	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:33:9:1.00:2	./.	./.	./.	0/1:2,73:32:75:0.973:2	./.	0/1:150,6:29:156:0.038:2	./.	./.
chr1	207646923	rs17616	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:32:8:1.00:2	./.	./.	./.	0/1:4,84:32:88:0.955:2	./.	./.	./.	./.
chr1	207648173	rs61735651	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,7:30:9:0.778:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	207651259	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:31:89:0.045:2	./.	./.	./.	./.	./.
chr1	207653364	rs17618	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,137:30:138:0.993:2	./.	./.	./.	./.	0/1:84,75:30:159:0.472:2	./.	./.
chr1	207653395	rs17617	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,140:32:140:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,19:30:19:1.00:2	./.	0/1:0,112:31:112:1.00:2	0/1:1,131:30:132:0.992:2	0/1:0,114:31:114:1.00:2	0/1:81,67:31:148:0.453:2	./.	0/1:79,63:31:142:0.444:2	0/1:0,152:31:152:1.00:2
chr1	207679307	rs4844600	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,117:33:118:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,24:33:24:1.00:2	./.	0/1:0,74:31:74:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,116:32:116:1.00:2	0/1:97,83:33:180:0.461:2	./.	0/1:63,47:32:110:0.427:2	0/1:87,85:32:172:0.494:2
chr1	207697152	rs200445052	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,7:32:190:0.037:2	0/1:178,6:32:186:0.033:2
chr1	207697169	rs200373331	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:33:183:0.022:2
chr1	207702097	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.
chr1	207705605	rs148620569	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:1,16:31:17:0.941:2	0/1:1,12:33:13:0.923:2	./.	./.	./.	./.	./.	./.	./.	0/1:56,20:33:76:0.263:2	0/1:69,11:32:80:0.138:2
chr1	207707606	rs200755424	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:149,48:32:197:0.244:2	0/1:155,34:32:189:0.180:2	./.	./.	./.	./.	./.	./.	./.	0/1:148,48:33:196:0.245:2	0/1:158,35:32:193:0.181:2
chr1	207715556	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,8:29:190:0.042:2	./.	./.	./.
chr1	207715740	rs140717816	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:76,70:32:147:0.479:2	0/1:56,51:32:107:0.477:2	0/1:10,7:33:17:0.412:2	./.	./.	./.	./.	./.	./.	0/1:108,62:32:170:0.365:2	0/1:111,59:31:170:0.347:2
chr1	207724160	rs147353507	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:0,21:31:21:1.00:2	0/1:0,10:32:10:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:30,12:33:42:0.286:2	0/1:81,25:32:106:0.236:2
chr1	207726161	rs200082366	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:158,39:33:197:0.198:2	0/1:158,40:32:198:0.202:2	./.	./.	./.	./.	./.	./.	./.	0/1:151,43:32:194:0.222:2	0/1:151,42:33:193:0.218:2
chr1	207734297	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:93,81:31:174:0.466:2	0/1:54,40:32:94:0.426:2	0/1:9,7:31:16:0.438:2	./.	./.	./.	./.	./.	./.	0/1:115,66:30:181:0.365:2	0/1:124,51:30:175:0.291:2
chr1	207734412	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2
chr1	207739201	.	C	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	0/1:191,5:32:196:0.026:2	./.	0/1:189,6:33:195:0.031:2	0/1:190,4:33:194:0.021:2	0/1:190,6:30:196:0.031:2	./.
chr1	207739211	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	0/1:192,6:31:198:0.030:2	./.	0/1:173,6:33:180:0.034:2	0/1:193,4:34:197:0.020:2	0/1:176,7:33:183:0.038:2	./.
chr1	207739213	rs56229517	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:181,4:33:185:0.022:2	./.	./.	./.	./.	0/1:187,4:32:191:0.021:2	./.	./.	./.	./.
chr1	207741245	rs41274762	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:136,15:31:151:0.099:2	0/1:92,6:29:98:0.061:2	./.	./.	./.	./.	./.	./.	./.	0/1:116,17:32:133:0.128:2	0/1:162,12:31:176:0.069:2
chr1	207743256	.	G	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:146,52:32:198:0.263:2	0/1:147,46:32:193:0.238:2	./.	./.	./.	./.	./.	./.	./.	0/1:165,33:33:198:0.167:2	0/1:165,29:31:194:0.149:2
chr1	207753621	rs2274567	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:34,40:28:74:0.541:2	0/1:27,13:26:40:0.325:2	0/1:0,5:28:5:1.00:2	./.	./.	./.	./.	./.	./.	0/1:41,34:28:75:0.453:2	0/1:39,51:28:90:0.567:2
chr1	207757995	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,4:32:38:0.105:2	./.	./.	./.	./.	./.	./.	./.
chr1	207760773	rs3737002	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,21:31:69:0.304:2	0/1:59,58:31:117:0.496:2	./.	./.	./.	./.	./.
chr1	207782707	rs17259045	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,84:32:151:0.556:2	./.	./.	./.	./.	./.
chr1	207782916	rs4844609	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:32:62:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,81:31:81:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,99:31:99:1.00:2	0/1:62,30:32:92:0.326:2	0/1:0,66:31:66:1.00:2	0/1:0,99:31:100:1.00:2
chr1	207782931	rs6691117	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:20,35:29:55:0.636:2	0/1:32,18:30:50:0.360:2	0/1:6,6:29:12:0.500:2	./.	./.	./.	./.	./.	./.	0/1:36,32:30:68:0.471:2	0/1:53,47:29:100:0.470:2
chr1	207787753	rs55749440	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,6:34:135:0.044:2	./.	./.	0/1:155,4:34:159:0.025:2
chr1	207787767	rs55647214	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,6:33:172:0.035:2	./.	./.	./.	./.	./.
chr1	207787777	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,6:30:186:0.032:2	./.	./.	./.	./.	./.
chr1	207787796	rs61822976	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:144,11:29:155:0.071:2	./.	./.	0/1:184,10:29:194:0.052:2	./.	0/1:171,13:28:184:0.071:2	0/1:129,22:29:151:0.146:2	0/1:164,26:29:191:0.137:2	0/1:161,14:30:175:0.080:2	./.	0/1:166,16:30:182:0.088:2
chr1	207789977	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:33:90:0.045:2	./.	./.	./.
chr1	207790088	rs3811381	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:86,61:30:147:0.415:2	0/1:51,37:30:88:0.420:2	0/1:8,12:30:20:0.600:2	./.	./.	./.	./.	./.	./.	0/1:53,80:30:133:0.602:2	0/1:99,83:29:182:0.456:2
chr1	207791434	rs41274770	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,51:33:127:0.402:2	./.	./.	./.	./.
chr1	207795320	rs2296160	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,175:33:175:1.00:2	0/1:0,157:33:157:1.00:2	0/1:0,50:33:50:1.00:2	0/1:96,65:33:161:0.404:2	./.	0/1:0,152:33:153:1.00:2	./.	0/1:0,159:33:159:1.00:2	0/1:98,60:33:158:0.380:2	0/1:83,67:33:150:0.447:2	0/1:86,77:33:163:0.472:2
chr1	207850792	.	C	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:130,5:32:135:0.037:2	./.	./.	./.	0/1:152,6:32:158:0.038:2	0/1:182,8:32:190:0.042:2	0/1:149,9:32:158:0.057:2	0/1:181,7:33:188:0.037:2	./.	0/1:128,6:33:134:0.045:2	0/1:179,7:35:187:0.038:2
chr1	207850879	rs34509370	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,47:32:111:0.423:2	0/1:35,47:31:82:0.573:2	0/1:10,6:31:16:0.375:2	0/1:81,43:31:124:0.347:2	0/1:47,31:31:78:0.397:2	0/1:76,52:30:128:0.406:2	0/1:4,81:31:85:0.953:2	0/1:81,49:31:130:0.377:2	0/1:88,59:32:147:0.401:2	./.	./.
chr1	207851554	rs72468037	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,10:32:18:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	207851611	rs2296158	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,142:30:142:1.00:2	0/1:1,57:30:58:0.983:2	0/1:2,15:30:17:0.882:2	0/1:76,67:30:143:0.469:2	0/1:68,47:29:116:0.409:2	0/1:75,66:30:141:0.468:2	0/1:0,99:30:99:1.00:2	0/1:92,65:30:157:0.414:2	0/1:74,90:31:164:0.549:2	0/1:79,71:30:150:0.473:2	./.
chr1	207857222	rs41314532	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,35:31:93:0.376:2	./.	./.	./.	./.
chr1	207857254	rs3085	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:30:11:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	207867854	rs41303261	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,16:30:44:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	207868022	rs72468038	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,16:31:27:0.593:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	207871016	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,6:32:156:0.038:2	./.	./.	./.	./.	./.
chr1	207872595	rs12729569	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:95,88:33:183:0.481:2	0/1:80,80:32:160:0.500:2	0/1:16,30:33:46:0.652:2	0/1:93,100:33:193:0.518:2	0/1:73,43:32:116:0.371:2	0/1:105,72:32:177:0.407:2	0/1:2,115:33:117:0.983:2	0/1:90,94:33:184:0.511:2	0/1:105,85:33:190:0.447:2	./.	./.
chr1	207874888	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,8:32:197:0.041:2	0/1:189,6:31:195:0.031:2
chr1	207881557	rs6683902	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:96,65:32:161:0.404:2	0/1:83,66:32:149:0.443:2	0/1:0,52:32:52:1.00:2	0/1:120,65:32:185:0.351:2	./.	0/1:102,91:32:193:0.472:2	0/1:109,85:32:194:0.438:2	./.	0/1:124,64:33:188:0.340:2	0/1:2,171:32:173:0.988:2	./.
chr1	207890866	rs2796257	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,42:33:93:0.452:2	0/1:27,24:32:51:0.471:2	./.	0/1:83,41:32:124:0.331:2	0/1:1,46:32:47:0.979:2	0/1:56,43:32:99:0.434:2	0/1:31,36:33:67:0.537:2	0/1:3,91:32:94:0.968:2	0/1:50,37:33:87:0.425:2	./.	0/1:0,114:33:114:1.00:2
chr1	207941191	rs2724374	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,18:32:18:1.00:2	0/1:0,12:32:12:1.00:2	./.	0/1:0,26:31:26:1.00:2	0/1:0,25:28:25:1.00:2	0/1:8,13:30:21:0.619:2	0/1:0,17:32:17:1.00:2	0/1:13,7:31:20:0.350:2	0/1:0,38:32:38:1.00:2	0/1:13,6:31:19:0.316:2	./.
chr1	208063067	rs2179634	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,30:30:57:0.526:2	0/1:16,16:31:32:0.500:2	0/1:0,13:29:13:1.00:2	0/1:32,20:30:52:0.385:2	0/1:25,17:30:42:0.405:2	0/1:33,34:30:67:0.507:2	0/1:27,12:29:39:0.308:2	0/1:35,16:29:51:0.314:2	0/1:44,26:32:70:0.371:2	0/1:20,13:31:33:0.394:2	./.
chr1	208207839	rs3736963	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,24:31:54:0.444:2	0/1:11,11:32:22:0.500:2	0/1:1,3:27:4:0.750:2	0/1:31,31:31:62:0.500:2	./.	0/1:0,54:31:54:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,67:32:67:1.00:2	0/1:27,32:33:59:0.542:2	0/1:24,21:32:45:0.467:2	0/1:0,47:32:47:1.00:2
chr1	208272313	rs200698765	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,13:17:41:0.317:2	0/1:25,8:18:33:0.242:2	0/1:6,3:27:9:0.333:2	0/1:32,22:20:54:0.407:2	0/1:50,34:16:85:0.405:2	0/1:49,26:18:75:0.347:2	0/1:48,32:17:80:0.400:2	0/1:50,37:17:87:0.425:2	0/1:64,26:14:90:0.289:2	0/1:34,22:18:56:0.393:2	0/1:46,28:18:75:0.378:2
chr1	208390086	rs1664227	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,15:32:25:0.600:2	0/1:25,24:29:49:0.490:2	0/1:19,13:30:32:0.406:2	./.	0/1:14,18:31:32:0.563:2	0/1:13,23:31:36:0.639:2	./.	0/1:13,13:30:26:0.500:2
chr1	208390155	rs4844657	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,18:30:38:0.474:2	0/1:6,9:29:15:0.600:2	./.	./.	./.	0/1:26,36:29:62:0.581:2	0/1:50,40:29:90:0.444:2	0/1:33,28:29:61:0.459:2	./.	./.	./.
chr1	208390162	rs4844658	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,20:33:44:0.455:2	0/1:8,10:32:18:0.556:2	./.	./.	./.	0/1:25,33:31:58:0.569:2	0/1:49,45:31:94:0.479:2	0/1:37,27:32:64:0.422:2	./.	./.	./.
chr1	208390469	rs3748735	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:31:11:0.545:2	./.	0/1:30,32:30:62:0.516:2	./.	0/1:35,31:31:66:0.470:2	./.	./.	0/1:22,17:30:39:0.436:2	0/1:34,25:32:59:0.424:2
chr1	208390571	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:30:68:0.059:2	./.	./.	./.	./.
chr1	208391085	rs12120681	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,98:32:191:0.513:2	0/1:106,73:30:179:0.408:2	./.	0/1:103,81:32:185:0.440:2	./.	./.	./.
chr1	208391254	rs2782948	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,11:31:18:0.611:2	0/1:7,6:31:13:0.462:2	0/1:5,7:31:12:0.583:2	./.	0/1:6,4:30:10:0.400:2	0/1:7,10:32:17:0.588:2	./.	0/1:6,6:32:12:0.500:2
chr1	209782343	rs11119314	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:48,41:29:89:0.461:2	0/1:24,27:29:51:0.529:2	./.	0/1:66,50:29:116:0.431:2	0/1:43,25:27:68:0.368:2	./.	./.	0/1:0,84:28:84:1.00:2	0/1:0,114:29:114:1.00:2	0/1:58,42:28:100:0.420:2	./.
chr1	209785206	rs11119315	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	0/1:25,12:31:37:0.324:2	0/1:31,28:31:59:0.475:2	./.	./.	0/1:21,13:31:34:0.382:2	./.
chr1	209788703	rs1049607	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,21:30:39:0.538:2	0/1:10,7:28:17:0.412:2	0/1:0,5:29:5:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,79:28:79:1.00:2	0/1:23,33:29:56:0.589:2	0/1:41,27:29:68:0.397:2	./.	./.	0/1:15,13:26:28:0.464:2	./.
chr1	209795909	rs3179860	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,20:32:56:0.364:2	0/1:17,15:32:32:0.469:2	0/1:5,6:32:11:0.545:2	0/1:2,85:32:87:0.977:2	0/1:2,96:32:98:0.980:2	./.	./.	./.	./.	./.	./.
chr1	209796329	rs12748250	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,15:31:39:0.385:2	0/1:8,12:30:20:0.600:2	./.	0/1:1,33:31:34:0.971:2	0/1:3,19:31:22:0.864:2	./.	./.	./.	./.	./.	./.
chr1	209796950	rs202068754	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:115,21:9:136:0.154:2	./.	./.	./.	./.	0/1:85,10:23:96:0.105:2	./.
chr1	209799253	rs2179402	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:32:44:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,54:32:54:1.00:2	0/1:1,66:32:67:0.985:2	0/1:23,22:31:45:0.489:2	0/1:38,38:31:76:0.500:2	./.	0/1:21,20:32:41:0.488:2	0/1:0,30:31:30:1.00:2
chr1	209807972	rs1130667	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,39:33:40:0.975:2	0/1:0,33:33:33:1.00:2	./.	./.	./.	0/1:24,31:31:55:0.564:2	0/1:34,25:31:59:0.424:2	./.	./.	0/1:34,25:34:59:0.424:2	0/1:0,39:33:39:1.00:2
chr1	209811886	rs2076356	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:2,71:32:73:0.973:2	0/1:1,40:33:41:0.976:2	0/1:8,7:33:15:0.467:2	./.	./.	0/1:2,105:32:107:0.981:2	0/1:1,154:31:155:0.994:2	./.	./.	0/1:0,90:32:90:1.00:2	0/1:44,36:31:80:0.450:2
chr1	209823354	rs2228339	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,3:32:9:0.333:2	0/1:1,51:32:52:0.981:2	0/1:1,51:32:52:0.981:2	./.	./.	0/1:2,62:31:64:0.969:2	0/1:35,36:33:71:0.507:2	./.	./.
chr1	209849406	rs1473683	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:33:46:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,29:32:29:1.00:2	0/1:1,44:32:45:0.978:2	0/1:0,47:32:47:1.00:2	0/1:2,54:33:56:0.964:2	0/1:0,55:32:55:1.00:2	0/1:0,44:34:44:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,35:32:35:1.00:2
chr1	209849535	rs78075213	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,36:33:83:0.434:2	0/1:29,28:32:57:0.491:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	209905856	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:32:179:0.022:2	./.
chr1	209907731	rs41283132	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,34:30:59:0.576:2	./.	./.	./.	./.
chr1	209933528	rs2076149	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,50:30:95:0.526:2	./.	./.	./.	./.	0/1:35,39:32:74:0.527:2	./.	./.
chr1	209933540	rs2076150	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,58:33:58:1.00:2	0/1:0,36:32:36:1.00:2	./.	0/1:56,48:33:104:0.462:2	./.	./.	./.	./.	./.	./.	0/1:39,39:33:78:0.500:2
chr1	209933660	rs2076151	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,43:31:78:0.551:2	./.	./.	./.	./.	./.	./.	./.
chr1	209935895	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:33:105:0.038:2	./.	./.	./.	./.
chr1	209936466	rs7548219	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,102:31:103:0.990:2	0/1:0,41:30:41:1.00:2	./.	0/1:41,41:29:82:0.500:2	./.	./.	./.	./.	./.	./.	0/1:47,43:31:90:0.478:2
chr1	209936673	rs7536882	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,44:33:44:1.00:2	0/1:0,19:33:19:1.00:2	./.	0/1:21,20:33:41:0.488:2	./.	./.	./.	./.	./.	./.	0/1:26,30:33:56:0.536:2
chr1	209936914	rs17015169	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:3,69:32:72:0.958:2	0/1:0,40:32:40:1.00:2	./.	0/1:57,42:33:99:0.424:2	./.	./.	./.	./.	./.	./.	0/1:43,41:32:84:0.488:2
chr1	209950760	rs669694	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:32:80:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,12:33:12:1.00:2	0/1:47,50:32:97:0.515:2	0/1:0,56:32:56:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,127:33:127:1.00:2	0/1:0,87:33:87:1.00:2	0/1:0,58:31:58:1.00:2	0/1:62,31:33:93:0.333:2
chr1	209957005	rs187773705	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,8:32:18:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	209961970	rs200166664	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,11:17:74:0.149:2	./.	./.	0/1:69,10:15:79:0.127:2	./.	./.	0/1:44,8:16:52:0.154:2	./.
chr1	209964080	rs2235371	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,41:31:92:0.446:2	./.	./.	./.	./.	0/1:68,56:32:124:0.452:2	./.	./.
chr1	209964141	rs41303263	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,27:31:55:0.491:2	./.	./.	./.	./.	./.	./.	./.
chr1	209968684	rs2013162	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,3:30:12:0.250:2	0/1:66,70:32:136:0.515:2	./.	./.	0/1:105,83:32:188:0.441:2	0/1:80,86:32:166:0.518:2	0/1:0,95:33:95:1.00:2	./.	./.
chr1	210004199	rs585627	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:60,42:33:102:0.412:2	0/1:48,27:33:75:0.360:2	0/1:7,7:34:14:0.500:2	./.	0/1:0,58:32:58:1.00:2	0/1:0,77:32:77:1.00:2	0/1:1,53:34:54:0.981:2	0/1:3,88:33:91:0.967:2	0/1:71,51:34:122:0.418:2	0/1:0,61:32:61:1.00:2	0/1:65,57:33:122:0.467:2
chr1	210006603	rs656566	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,21:32:38:0.553:2	0/1:11,15:32:26:0.577:2	./.	./.	0/1:0,20:33:20:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,35:32:35:1.00:2	0/1:12,18:33:30:0.600:2	0/1:0,25:32:25:1.00:2	0/1:16,15:33:31:0.484:2
chr1	210194514	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:146,4:31:150:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr1	210267817	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:32:165:0.024:2	./.	./.	./.	./.	./.
chr1	210273555	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:166,4:31:170:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr1	210334081	rs17188183	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,12:31:24:0.500:2	./.	0/1:33,46:31:79:0.582:2	./.	./.
chr1	210407031	rs624706	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:31:43:1.00:2	0/1:2,16:30:18:0.889:2	0/1:0,6:28:6:1.00:2	0/1:0,52:29:52:1.00:2	./.	./.	./.	./.	./.	0/1:27,36:30:63:0.571:2	./.
chr1	210412843	rs61740848	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,15:31:31:0.484:2	./.	./.	./.	./.
chr1	210536278	rs11119469	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,8:32:17:0.471:2	0/1:18,9:31:27:0.333:2	0/1:9,5:32:14:0.357:2	0/1:11,9:32:20:0.450:2	./.	./.	0/1:37,6:33:43:0.140:2
chr1	210577831	rs34772809	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,28:31:97:0.292:2	0/1:66,34:31:100:0.340:2	0/1:94,32:30:126:0.254:2	0/1:74,51:31:125:0.408:2	./.	./.	0/1:69,36:30:105:0.343:2
chr1	210577873	rs2066721	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:33:90:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,8:32:8:1.00:2	0/1:43,53:33:96:0.552:2	0/1:61,32:32:93:0.344:2	0/1:50,31:32:81:0.383:2	0/1:78,23:33:101:0.228:2	0/1:81,40:33:121:0.331:2	0/1:72,48:33:120:0.400:2	0/1:55,37:33:92:0.402:2	0/1:1,91:32:92:0.989:2
chr1	210577901	rs34228541	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,29:30:83:0.349:2	0/1:49,30:30:79:0.380:2	0/1:63,32:30:95:0.337:2	0/1:75,39:29:114:0.342:2	./.	./.	0/1:39,47:29:86:0.547:2
chr1	210856818	rs114571785	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,71:33:188:0.378:2	./.	./.
chr1	210856989	rs1135318	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,88:32:191:0.461:2	./.	./.	./.	./.
chr1	210857138	rs139659266	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,16:30:29:0.552:2	./.	./.	./.	./.	./.
chr1	210857209	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:28:75:0.053:2	./.	./.	./.	./.	./.
chr1	210857457	rs1135317	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:28:20:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,18:29:18:1.00:2	./.	0/1:0,14:28:15:1.00:2	0/1:0,7:31:7:1.00:2	./.	0/1:0,18:30:18:1.00:2	0/1:3,5:31:8:0.625:2	0/1:3,9:32:12:0.750:2
chr1	211093346	rs6679399	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:31:9:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	211447625	rs11580084	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:151,4:31:155:0.026:2	0/1:0,43:32:43:1.00:2	0/1:1,166:32:167:0.994:2	0/1:108,82:32:190:0.432:2	0/1:124,72:31:196:0.367:2	0/1:3,154:32:157:0.981:2	0/1:4,172:32:176:0.977:2	0/1:116,75:33:191:0.393:2	./.	0/1:108,85:32:193:0.440:2
chr1	211451467	rs11577985	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,16:33:34:0.471:2	./.	./.	0/1:28,15:33:43:0.349:2	0/1:18,20:31:38:0.526:2	0/1:45,37:32:82:0.451:2
chr1	211486913	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:29:78:0.051:2
chr1	211533349	rs187481865	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,27:32:82:0.329:2	./.	./.	./.	./.
chr1	211533352	rs2230779	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,39:29:90:0.433:2	0/1:33,25:30:58:0.431:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	211654619	rs34049451	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,86:28:176:0.497:2	./.	./.	./.	./.	./.
chr1	211749259	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:32:61:0.066:2	./.	./.
chr1	211836789	rs12031285	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,13:33:24:0.542:2	./.	0/1:108,82:32:190:0.432:2	./.	./.	0/1:98,84:32:182:0.462:2	./.	./.	./.
chr1	211836926	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:126,4:34:130:0.031:2	./.	./.	0/1:122,4:35:127:0.032:2	./.	0/1:143,6:32:149:0.040:2	./.	./.	./.	./.	./.
chr1	211836927	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:123,4:31:127:0.031:2	./.	./.	0/1:123,4:33:127:0.031:2	./.	0/1:139,6:31:145:0.041:2	./.	./.	./.	./.	./.
chr1	211840498	rs2230489	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,8:33:22:0.364:2	./.	0/1:63,56:32:119:0.471:2	./.	./.	./.	./.	./.	./.
chr1	211842516	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,6:31:143:0.042:2	./.
chr1	211842550	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,6:33:146:0.041:2	./.
chr1	211842553	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,8:31:144:0.056:2	./.
chr1	211843672	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,6:31:127:0.047:2	./.	./.	./.	./.	./.
chr1	211843678	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,8:30:125:0.064:2	./.	./.	./.	./.	0/1:184,4:33:188:0.021:2
chr1	211846876	rs701929	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:71,4:29:75:0.053:2	0/1:6,4:28:10:0.400:2	./.	0/1:61,34:28:95:0.358:2	0/1:71,54:29:125:0.432:2	0/1:1,83:29:84:0.988:2	0/1:0,118:29:118:1.00:2	0/1:0,116:29:116:1.00:2	0/1:0,91:29:91:1.00:2	0/1:75,58:29:133:0.436:2
chr1	211846891	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,5:33:130:0.038:2	./.	./.	./.	./.	./.
chr1	211847004	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:32:84:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	211847030	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	212273606	rs35137676	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,39:31:83:0.470:2	./.	./.	./.	./.	./.	./.	./.
chr1	212273639	rs3135474	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,112:29:113:0.991:2	0/1:0,62:29:63:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,116:29:116:1.00:2	0/1:0,121:28:121:1.00:2	0/1:1,156:29:158:0.994:2	0/1:1,125:29:127:0.992:2	0/1:1,184:29:186:0.995:2	0/1:1,146:29:147:0.993:2	0/1:1,92:29:93:0.989:2	0/1:86,70:29:156:0.449:2
chr1	212274413	rs6540718	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:33:19:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,3:35:3:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,23:33:24:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,22:33:22:1.00:2	0/1:0,23:32:23:1.00:2
chr1	212502652	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,6:29:106:0.057:2	./.	./.	./.	./.	./.
chr1	212515613	rs1774249	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:32:5:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,13:31:13:1.00:2	0/1:26,12:31:38:0.316:2	0/1:20,12:32:32:0.375:2	./.	./.	./.	0/1:36,34:32:70:0.486:2
chr1	212558695	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:169,4:32:173:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr1	212560327	rs792449	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:33:85:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,111:33:111:1.00:2	0/1:0,167:32:167:1.00:2	0/1:0,145:33:145:1.00:2	0/1:0,171:32:171:1.00:2	0/1:0,169:33:169:1.00:2	0/1:0,126:33:127:1.00:2	0/1:0,114:32:114:1.00:2	0/1:0,104:32:104:1.00:2
chr1	212560350	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:32:138:0.029:2	./.	./.
chr1	212619339	rs4804	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:29:10:1.00:2	0/1:0,97:29:97:1.00:2	0/1:57,41:30:98:0.418:2	0/1:60,41:30:101:0.406:2	0/1:78,55:30:133:0.414:2	0/1:65,53:29:118:0.449:2	./.	./.	0/1:61,44:29:105:0.419:2
chr1	212788437	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,14:32:31:0.452:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	212798977	rs3122712	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:31:9:1.00:2	./.	0/1:23,18:32:41:0.439:2	0/1:10,18:31:28:0.643:2	0/1:14,18:32:32:0.563:2	0/1:34,31:31:65:0.477:2	./.	0/1:18,13:32:31:0.419:2	./.
chr1	212799535	rs114509113	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,21:29:36:0.600:2	./.	./.	./.	./.	./.
chr1	212799870	rs3122713	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,46:31:115:0.400:2	0/1:33,32:32:65:0.492:2	0/1:0,10:32:10:1.00:2	0/1:97,49:33:146:0.336:2	0/1:96,85:32:181:0.470:2	0/1:74,68:32:142:0.479:2	0/1:91,92:32:183:0.503:2	0/1:1,161:32:162:0.994:2	0/1:0,132:32:132:1.00:2	0/1:77,47:32:124:0.379:2	0/1:0,99:31:99:1.00:2
chr1	212799949	rs3795842	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,41:31:103:0.398:2	0/1:47,29:31:76:0.382:2	0/1:5,5:31:10:0.500:2	0/1:75,53:31:128:0.414:2	./.	./.	0/1:71,68:31:139:0.489:2	0/1:3,126:31:129:0.977:2	0/1:2,104:32:106:0.981:2	0/1:69,50:29:119:0.420:2	0/1:0,104:31:105:1.00:2
chr1	212900487	rs2244935	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:33:51:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,47:33:47:1.00:2	0/1:20,9:33:29:0.310:2	0/1:0,47:32:47:1.00:2	0/1:0,25:33:25:1.00:2	0/1:2,48:32:50:0.960:2	0/1:36,26:33:62:0.419:2	0/1:0,48:32:48:1.00:2	0/1:0,38:33:38:1.00:2
chr1	212911836	rs15702	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:30:7:1.00:2	0/1:44,28:30:72:0.389:2	0/1:37,21:30:58:0.362:2	0/1:39,39:30:78:0.500:2	0/1:0,46:30:46:1.00:2	0/1:34,54:30:88:0.614:2	./.	0/1:51,27:30:78:0.346:2	0/1:2,96:30:98:0.980:2
chr1	212965095	rs17856201	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,14:27:30:0.467:2	./.	./.	./.	./.
chr1	212965284	rs61736926	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:32:9:0.444:2	./.	./.	./.	0/1:59,53:30:112:0.473:2	./.	./.	0/1:49,55:32:104:0.529:2	./.
chr1	212985592	rs78095001	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,4:30:21:0.190:2	./.	./.	./.	./.	./.	./.	0/1:36,20:31:56:0.357:2	./.
chr1	213009469	rs10864004	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:94,82:33:176:0.466:2	0/1:45,56:31:101:0.554:2	0/1:0,8:32:8:1.00:2	0/1:88,106:32:194:0.546:2	0/1:79,74:33:153:0.484:2	0/1:101,67:32:168:0.399:2	0/1:1,127:33:128:0.992:2	0/1:122,67:32:189:0.354:2	./.	./.	0/1:0,171:33:171:1.00:2
chr1	213031948	rs11120047	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,8:31:9:0.889:2	0/1:0,5:33:5:1.00:2	./.	./.	0/1:2,3:27:5:0.600:2	0/1:5,8:29:13:0.615:2	./.	0/1:2,2:35:4:0.500:2	./.
chr1	213058739	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:32:88:0.046:2
chr1	213061308	rs17677416	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,80:33:168:0.476:2
chr1	213068404	rs17019870	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,25:32:47:0.532:2	0/1:23,21:33:44:0.477:2	./.	./.	./.	0/1:36,44:32:80:0.550:2	./.	0/1:34,42:33:76:0.553:2	0/1:31,41:33:72:0.569:2	0/1:35,40:32:77:0.533:2	./.
chr1	213068595	rs3207090	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:31:10:1.00:2	0/1:47,59:31:106:0.557:2	0/1:50,47:31:98:0.485:2	0/1:59,65:31:124:0.524:2	0/1:37,45:32:82:0.549:2	0/1:64,50:31:114:0.439:2	./.	0/1:48,51:32:99:0.515:2	0/1:2,96:32:98:0.980:2
chr1	213147400	rs35976699	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,9:31:20:0.450:2	./.	./.	./.
chr1	213303168	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:33:4:0.750:2	./.
chr1	213414090	rs56183862	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,33:33:78:0.423:2	./.	./.	./.	./.	./.	./.	./.
chr1	214492286	rs1134647	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:32:86:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,123:31:123:1.00:2	0/1:0,102:31:102:1.00:2	0/1:2,104:32:106:0.981:2	0/1:1,132:31:133:0.992:2	./.	0/1:0,106:31:106:1.00:2	0/1:82,53:32:135:0.393:2
chr1	214507580	rs34259050	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,67:30:112:0.598:2	./.	./.	./.	./.	./.
chr1	214542819	rs1135352	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,42:33:93:0.452:2	0/1:23,37:32:60:0.617:2	0/1:0,15:33:15:1.00:2	0/1:37,33:32:70:0.471:2	0/1:0,74:32:75:1.00:2	0/1:49,51:33:100:0.510:2	0/1:2,68:32:70:0.971:2	./.	./.	0/1:1,100:32:101:0.990:2	0/1:57,52:32:109:0.477:2
chr1	214564340	rs7550799	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,32:32:72:0.444:2	0/1:17,21:31:38:0.553:2	0/1:0,8:31:8:1.00:2	0/1:40,26:32:66:0.394:2	0/1:0,31:32:31:1.00:2	0/1:16,24:31:40:0.600:2	0/1:0,30:31:30:1.00:2	./.	./.	0/1:0,65:32:65:1.00:2	0/1:32,28:31:60:0.467:2
chr1	214571251	rs11580603	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:33:3:1.00:2	0/1:12,13:31:25:0.520:2	0/1:5,6:33:11:0.545:2	0/1:16,10:33:26:0.385:2	0/1:0,14:33:14:1.00:2	./.	./.	0/1:12,18:32:30:0.600:2	./.
chr1	214575122	rs17022807	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,25:31:55:0.455:2	0/1:20,13:31:33:0.394:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	214625240	rs148513026	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,68:33:107:0.636:2	./.	./.	./.	./.
chr1	214638018	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:33:176:0.023:2	./.	./.	./.	./.	./.
chr1	214787130	rs2070064	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,22:32:68:0.324:2	0/1:21,26:32:47:0.553:2	0/1:6,12:31:18:0.667:2	0/1:55,38:30:93:0.409:2	0/1:35,29:31:64:0.453:2	0/1:36,34:31:70:0.486:2	0/1:2,39:32:41:0.951:2	0/1:34,41:32:75:0.547:2	0/1:57,54:31:111:0.486:2	./.	0/1:1,110:31:111:0.991:2
chr1	214811244	rs2070065	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,9:33:17:0.529:2	./.	0/1:72,29:32:101:0.287:2	./.	./.	./.	0/1:87,97:34:184:0.527:2	./.	./.
chr1	214813487	rs2070066	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,13:31:30:0.433:2	./.	./.	./.	./.	./.	./.
chr1	214813782	rs3795524	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,31:32:88:0.352:2	./.	./.	./.	./.	./.	./.
chr1	214813941	rs3795523	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,30:28:67:0.448:2	./.	./.	./.	./.	./.	./.
chr1	214814059	rs61732042	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:28:10:0.500:2	./.	./.	./.	./.	./.	0/1:71,22:33:93:0.237:2	./.	./.
chr1	214814125	rs3795522	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,27:32:70:0.386:2	./.	./.	./.	./.	./.	./.
chr1	214814571	rs3795521	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,13:32:32:0.406:2	0/1:17,4:32:21:0.190:2	./.	0/1:17,11:32:28:0.393:2	0/1:12,13:31:25:0.520:2	0/1:17,15:30:32:0.469:2	0/1:0,20:31:20:1.00:2	0/1:11,4:31:15:0.267:2	0/1:22,15:32:37:0.405:2	./.	0/1:0,28:32:28:1.00:2
chr1	214814582	rs3795520	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,13:32:29:0.448:2	./.	./.	./.	./.	./.	./.
chr1	214814733	rs3795519	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,19:31:54:0.352:2	./.	./.	./.	./.	./.	./.
chr1	214814767	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:33:89:0.045:2	./.	./.
chr1	214814778	rs3795518	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,18:32:44:0.409:2	./.	./.	./.	./.	./.	./.
chr1	214814995	rs12067133	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,56:31:96:0.583:2	./.	./.	./.	./.	./.	./.
chr1	214815916	rs3795517	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,22:32:41:0.537:2	./.	./.	./.	./.	./.	./.
chr1	214816142	rs3795516	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,15:32:42:0.357:2	./.	./.	./.	./.	./.	./.
chr1	214816224	rs2666839	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	0/1:21,14:31:35:0.400:2	./.	./.	./.	0/1:40,12:31:52:0.231:2	./.	./.
chr1	214816297	rs3795514	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,11:32:31:0.355:2	./.	./.	./.	./.	./.	./.
chr1	214816574	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,5:31:95:0.053:2	./.	./.	./.	./.	./.
chr1	214818215	rs3748692	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,22:31:54:0.407:2	./.	./.	./.	./.	./.	./.
chr1	214818223	rs3748693	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	0/1:34,24:31:58:0.414:2	./.	./.	./.	0/1:52,36:32:88:0.409:2	./.	./.
chr1	214818614	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,3:30:19:0.158:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	214818846	rs3790646	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,35:31:63:0.556:2	./.	./.	./.	./.	./.	./.
chr1	214818945	rs3790647	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,58:32:86:0.674:2	./.	./.	./.	./.	./.	./.
chr1	214819301	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:31:80:0.050:2	./.	./.	./.	./.
chr1	214819328	rs3748695	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,32:31:88:0.364:2	./.	./.	./.	./.	./.	./.
chr1	214819587	rs12058704	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,20:29:46:0.435:2	./.	./.	./.	./.	./.	./.
chr1	214819980	rs3748696	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,50:31:71:0.704:2	./.	./.	./.	./.	./.	./.
chr1	214820099	rs3748697	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,13:33:42:0.310:2	0/1:9,11:31:20:0.550:2	./.	0/1:19,25:33:44:0.568:2	0/1:23,21:31:44:0.477:2	0/1:21,20:32:41:0.488:2	0/1:0,38:33:38:1.00:2	0/1:25,29:31:54:0.537:2	0/1:36,27:33:63:0.429:2	./.	0/1:1,75:33:76:0.987:2
chr1	214820299	rs3748698	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,27:32:56:0.482:2	./.	./.	./.	./.	./.	./.
chr1	214820494	rs3790648	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,17:30:54:0.315:2	./.	./.	./.	./.	./.	./.
chr1	214820524	rs3790649	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,21:29:67:0.313:2	./.	./.	./.	./.	./.	./.
chr1	214825112	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:33:184:0.022:2	./.	./.
chr1	214826196	rs335524	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,26:32:56:0.464:2	0/1:9,12:32:21:0.571:2	./.	0/1:26,20:32:46:0.435:2	0/1:31,10:31:41:0.244:2	0/1:30,27:30:57:0.474:2	./.	0/1:23,14:32:37:0.378:2	./.	0/1:18,14:32:32:0.438:2	./.
chr1	214830617	rs438034	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,15:33:25:0.600:2	0/1:19,5:32:24:0.208:2	./.	0/1:30,23:32:53:0.434:2	0/1:0,31:31:31:1.00:2	0/1:19,24:30:43:0.558:2	./.	0/1:23,20:32:43:0.465:2	0/1:18,28:33:46:0.609:2	0/1:1,37:32:38:0.974:2	./.
chr1	214837110	rs7289	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,10:33:21:0.476:2	0/1:4,3:33:7:0.429:2	./.	0/1:9,7:32:16:0.438:2	0/1:0,16:32:16:1.00:2	0/1:4,6:33:10:0.600:2	./.	0/1:7,3:32:10:0.300:2	0/1:6,5:32:11:0.455:2	0/1:0,10:31:10:1.00:2	./.
chr1	215741053	rs2275768	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.
chr1	215759972	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:31:163:0.025:2	./.	./.	./.	./.
chr1	215793623	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,4:33:29:0.138:2	./.	./.	./.	./.	./.	./.	./.
chr1	215793834	rs14137	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,12:31:33:0.364:2	0/1:0,15:30:15:1.00:2	./.	0/1:12,15:32:27:0.556:2	0/1:0,30:32:30:1.00:2	0/1:22,13:33:35:0.371:2	./.	0/1:24,13:33:37:0.351:2
chr1	215799210	rs77792891	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,58:31:148:0.392:2	./.
chr1	215848062	rs2009923	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,13:29:25:0.520:2	0/1:20,9:30:29:0.310:2	0/1:0,17:30:17:1.00:2	./.	0/1:16,14:32:30:0.467:2	0/1:16,8:32:24:0.333:2	0/1:13,4:33:17:0.235:2	./.
chr1	215848587	rs2797234	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:49,41:30:90:0.456:2	0/1:37,31:29:68:0.456:2	./.	./.	0/1:42,31:28:73:0.425:2	./.	0/1:4,75:29:79:0.949:2	0/1:72,72:29:145:0.500:2	./.	./.	0/1:72,83:29:155:0.535:2
chr1	215848641	rs2797235	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:28:103:1.00:2	0/1:0,57:29:57:1.00:2	0/1:7,8:28:15:0.533:2	0/1:53,60:29:113:0.531:2	0/1:32,27:29:59:0.458:2	./.	0/1:0,62:28:62:1.00:2	0/1:68,64:29:132:0.485:2	0/1:55,76:30:131:0.580:2	0/1:71,39:30:110:0.355:2	0/1:1,154:29:155:0.994:2
chr1	215901492	rs2820718	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,49:31:102:0.480:2	./.	./.	./.
chr1	215901563	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:33:136:0.029:2	./.	./.
chr1	215914826	rs35309576	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,19:32:36:0.528:2	0/1:0,33:32:33:1.00:2	0/1:17,20:32:37:0.541:2	0/1:22,15:33:37:0.405:2	./.	0/1:18,22:33:40:0.550:2	./.	0/1:37,32:31:69:0.464:2
chr1	215916563	rs11120616	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,24:32:62:0.387:2	0/1:0,27:30:27:1.00:2	0/1:37,43:31:80:0.538:2	0/1:35,19:32:54:0.352:2	./.	0/1:42,25:33:67:0.373:2	./.	0/1:46,27:32:73:0.370:2
chr1	215960153	.	A	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,18:17:84:0.214:2	0/1:74,12:12:86:0.140:2	0/1:9,7:18:16:0.438:2	0/1:78,34:13:113:0.304:2	0/1:77,35:11:112:0.313:2	0/1:83,34:13:117:0.291:2	0/1:96,29:12:125:0.232:2	0/1:91,38:12:129:0.295:2	0/1:101,37:13:139:0.268:2	0/1:71,26:18:97:0.268:2	0/1:69,29:18:99:0.296:2
chr1	215960167	rs10864198	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:78,59:32:137:0.431:2	0/1:41,47:32:88:0.534:2	./.	0/1:67,65:31:132:0.492:2	0/1:2,116:32:118:0.983:2	0/1:76,82:32:158:0.519:2	0/1:58,83:32:141:0.589:2	0/1:71,80:32:151:0.530:2	0/1:80,71:33:151:0.470:2	./.	0/1:95,61:32:156:0.391:2
chr1	215987222	rs4129843	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,23:32:60:0.383:2	./.	./.	./.	./.	./.	./.	./.
chr1	215990479	rs11120645	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,48:31:131:0.369:2
chr1	216011361	rs56032526	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,68:33:160:0.425:2	./.	./.	./.	./.	./.	./.	./.
chr1	216011370	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:31:173:0.023:2	./.	./.	./.
chr1	216011408	rs41277194	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,75:33:153:0.490:2
chr1	216011442	rs56056328	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,38:30:83:0.458:2	./.	0/1:21,23:30:44:0.523:2	./.
chr1	216051125	rs41277200	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,9:31:31:0.290:2	./.	./.	./.	./.	./.	./.	./.
chr1	216052345	rs56829872	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,82:33:163:0.503:2
chr1	216073425	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,4:29:68:0.059:2	./.	./.	./.	./.	./.	./.
chr1	216108128	rs111033394	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,13:33:25:0.520:2	./.	./.	./.	./.	./.	./.	./.
chr1	216144049	rs41277210	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,35:31:77:0.461:2	./.	./.	./.	./.	./.	0/1:51,31:32:82:0.378:2
chr1	216166454	rs41277212	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:33:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	216172380	rs10864219	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:32:11:0.545:2	./.	0/1:0,31:31:31:1.00:2	0/1:47,27:31:74:0.365:2	./.	0/1:0,55:32:55:1.00:2	0/1:0,102:33:102:1.00:2	0/1:23,24:33:47:0.511:2	0/1:0,88:33:88:1.00:2
chr1	216219781	rs6657250	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:33:58:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,11:33:11:1.00:2	0/1:38,47:33:85:0.553:2	0/1:44,39:32:83:0.470:2	0/1:0,66:32:66:1.00:2	0/1:47,39:32:86:0.453:2	0/1:2,121:32:123:0.984:2	0/1:0,92:33:92:1.00:2	0/1:1,68:33:69:0.986:2	0/1:58,43:32:101:0.426:2
chr1	216258194	rs56110889	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:23,18:31:41:0.439:2	0/1:7,7:32:14:0.500:2	./.	0/1:16,9:30:25:0.360:2	./.	0/1:9,13:31:22:0.591:2	0/1:14,11:33:25:0.440:2	./.	./.	./.	./.
chr1	216258213	rs56222536	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,19:32:19:1.00:2	0/1:15,9:33:24:0.375:2	0/1:8,10:32:18:0.556:2	./.
chr1	216260080	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:34:89:0.045:2	./.	./.
chr1	216348764	rs1805049	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:82,45:33:127:0.354:2	0/1:31,45:33:76:0.592:2	0/1:2,25:33:27:0.926:2	./.	0/1:1,134:32:135:0.993:2	0/1:100,66:32:166:0.398:2	./.	./.	./.	0/1:52,61:33:113:0.540:2	0/1:1,166:32:167:0.994:2
chr1	216363590	rs56013136	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:32:11:0.636:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	216424275	rs696723	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,62:29:145:0.428:2	./.	./.	./.	./.	./.	0/1:66,45:28:111:0.405:2	./.
chr1	216462662	rs1805048	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,37:31:87:0.425:2	0/1:59,45:31:104:0.433:2	0/1:34,45:32:79:0.570:2	./.	./.
chr1	216496947	rs1805050	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,120:32:121:0.992:2	./.	0/1:70,61:31:131:0.466:2	0/1:44,50:31:94:0.532:2	./.	0/1:86,82:33:169:0.488:2	0/1:48,45:31:93:0.484:2	./.
chr1	216592003	rs4253963	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:30:71:1.00:2	0/1:0,31:29:31:1.00:2	0/1:5,4:30:9:0.444:2	0/1:39,36:29:75:0.480:2	0/1:0,37:29:38:1.00:2	0/1:46,39:29:85:0.459:2	0/1:49,4:32:53:0.075:2	0/1:2,59:29:61:0.967:2	./.	0/1:34,39:29:73:0.534:2	0/1:0,80:29:82:1.00:2
chr1	216595306	rs10779261	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,86:31:87:0.989:2	0/1:0,54:31:54:1.00:2	0/1:6,5:31:11:0.455:2	0/1:60,46:30:106:0.434:2	0/1:0,52:30:52:1.00:2	0/1:44,37:30:81:0.457:2	./.	0/1:1,99:31:100:0.990:2	./.	0/1:45,36:31:81:0.444:2	0/1:0,100:31:100:1.00:2
chr1	216692669	rs945453	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:30,15:31:46:0.333:2	0/1:14,12:32:26:0.462:2	0/1:0,4:31:4:1.00:2	./.	0/1:0,32:31:32:1.00:2	0/1:19,27:31:46:0.587:2	0/1:18,16:30:34:0.471:2	0/1:32,17:32:49:0.347:2	0/1:0,41:33:41:1.00:2	0/1:34,20:31:54:0.370:2	0/1:0,57:32:57:1.00:2
chr1	217604654	rs35737297	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,36:32:86:0.419:2	./.	./.	./.	./.	./.
chr1	217804325	rs944730	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:3,3:26:6:0.500:2	0/1:2,2:33:4:0.500:2	./.	0/1:6,4:30:10:0.400:2	./.	0/1:13,10:33:23:0.435:2	./.	./.	0/1:11,8:33:19:0.421:2	0/1:6,4:33:10:0.400:2	0/1:0,10:32:10:1.00:2
chr1	217824493	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:33:139:0.029:2	./.
chr1	217856626	rs12068167	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,46:32:112:0.411:2	./.	./.	./.	./.	./.	0/1:46,33:32:79:0.418:2	0/1:2,174:32:176:0.989:2
chr1	217915324	rs34347452	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:29:15:0.600:2	./.	./.	./.	./.	./.	0/1:15,11:31:26:0.423:2	0/1:1,35:31:36:0.972:2
chr1	217947738	rs6604561	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,27:32:53:0.509:2	0/1:17,9:32:26:0.346:2	0/1:0,9:31:9:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,21:30:21:1.00:2	0/1:18,11:31:29:0.379:2	0/1:0,47:32:47:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,45:32:45:1.00:2	0/1:20,20:32:40:0.500:2	0/1:0,43:31:43:1.00:2
chr1	218458715	rs114550993	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,51:31:97:0.526:2	./.	./.	./.	./.	./.
chr1	218475847	rs77979592	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,12:32:13:0.923:2	./.
chr1	218478411	rs11118075	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,51:32:108:0.472:2	./.	./.	./.	./.
chr1	218520185	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:31:52:0.077:2	./.	./.	./.	./.	./.
chr1	218610791	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:138,4:33:142:0.028:2	./.	./.	./.	./.	./.	./.
chr1	218683528	rs7532546	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,11:32:20:0.550:2	./.	0/1:47,31:32:78:0.397:2	./.	./.	./.	./.	0/1:81,54:33:135:0.400:2	0/1:128,60:34:188:0.319:2
chr1	219383905	rs940570	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,142:33:142:1.00:2	0/1:0,87:33:87:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,122:33:122:1.00:2	0/1:0,83:33:83:1.00:2	0/1:3,126:32:129:0.977:2	0/1:1,135:33:136:0.993:2	0/1:0,120:33:120:1.00:2	0/1:0,133:34:133:1.00:2	0/1:0,125:33:125:1.00:2	0/1:0,198:33:198:1.00:2
chr1	220154768	rs1061160	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,48:31:98:0.490:2	./.	0/1:58,45:32:103:0.437:2	./.	0/1:56,41:32:97:0.423:2	./.	0/1:43,37:32:80:0.463:2
chr1	220162004	rs36122746	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	220197625	rs2230301	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,127:32:127:1.00:2	0/1:1,76:32:77:0.987:2	0/1:11,6:30:17:0.353:2	0/1:98,68:31:167:0.410:2	0/1:65,43:31:108:0.398:2	0/1:0,141:31:141:1.00:2	0/1:70,55:31:126:0.440:2	0/1:68,50:31:118:0.424:2	0/1:0,146:32:146:1.00:2	0/1:62,52:31:114:0.456:2	0/1:0,161:32:161:1.00:2
chr1	220232191	rs149911255	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,22:31:43:0.512:2	./.	./.	./.	./.	./.
chr1	220267581	rs149324758	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.
chr1	220267669	rs116823205	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,23:31:47:0.489:2	./.
chr1	220269548	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:32:172:0.023:2
chr1	220275477	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,50:31:135:0.370:2
chr1	220275746	rs199601961	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:34:29:0.138:2	./.
chr1	220298664	rs78770848	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:32:11:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	220326671	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:33:191:0.021:2
chr1	220330672	rs11547779	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,62:31:170:0.365:2	0/1:76,63:30:139:0.453:2	./.	0/1:90,84:30:174:0.483:2	./.	./.	./.	./.
chr1	220331205	rs2289189	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,15:31:41:0.366:2	0/1:14,13:32:27:0.481:2	./.	0/1:16,15:32:31:0.484:2	./.	./.	./.	./.
chr1	220373922	rs201407438	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,63:33:181:0.348:2
chr1	220791729	rs36024488	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,9:30:28:0.321:2	./.	0/1:37,15:30:52:0.288:2	./.	./.	./.	./.
chr1	220804451	rs35322308	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,15:33:46:0.326:2	./.	0/1:28,19:33:47:0.404:2	./.	./.	./.	./.
chr1	220869990	rs112837785	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:34:99:0.040:2	./.	./.
chr1	220928313	rs12044903	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,31:31:90:0.344:2	./.	0/1:53,18:30:71:0.254:2	./.	./.
chr1	220928334	rs12048193	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,41:32:121:0.339:2	./.	0/1:57,26:33:83:0.313:2	./.	./.
chr1	220928376	rs371348	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,66:32:157:0.420:2	./.	0/1:64,38:32:102:0.373:2	./.	./.
chr1	220935081	rs2275575	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,31:32:78:0.397:2	./.	./.	./.	./.	./.	0/1:45,34:32:79:0.430:2	./.
chr1	220936372	rs3795535	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,41:33:104:0.394:2	./.	0/1:95,71:33:166:0.428:2	./.	./.
chr1	220955168	rs12030434	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,31:30:68:0.456:2	./.	0/1:80,66:31:146:0.452:2	./.	./.
chr1	220960457	rs79575000	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,6:32:17:0.353:2	./.	./.
chr1	220970028	rs2642438	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:27:85:1.00:2	0/1:1,52:29:53:0.981:2	0/1:0,15:28:15:1.00:2	0/1:0,101:27:101:1.00:2	./.	0/1:64,56:27:120:0.467:2	0/1:0,164:27:164:1.00:2	0/1:86,86:27:172:0.500:2	0/1:68,73:27:142:0.518:2	0/1:0,109:27:109:1.00:2	0/1:0,99:27:99:1.00:2
chr1	221053545	rs12141189	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,20:31:20:1.00:2	./.	0/1:0,39:31:39:1.00:2	./.	./.	./.	0/1:7,18:31:25:0.720:2	0/1:5,6:30:11:0.545:2
chr1	221057646	rs2738755	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:30,40:31:71:0.571:2	0/1:28,25:31:53:0.472:2	0/1:3,10:28:14:0.769:2	./.	./.	./.	0/1:24,50:30:75:0.676:2	0/1:35,62:30:98:0.639:2	0/1:34,37:32:71:0.521:2	0/1:33,29:30:63:0.468:2	./.
chr1	221057662	rs3738182	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,10:29:12:0.833:2	./.	./.	./.	./.	0/1:36,49:29:85:0.576:2	0/1:34,27:31:61:0.443:2	0/1:25,30:30:55:0.545:2	./.
chr1	221057739	rs11578466	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:45,38:31:83:0.458:2	0/1:24,15:31:39:0.385:2	./.	./.	./.	./.	0/1:56,57:31:113:0.504:2	./.	./.	./.	./.
chr1	221912361	rs1141714	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:32:80:1.00:2	0/1:0,70:31:70:1.00:2	0/1:5,9:31:14:0.643:2	0/1:71,64:32:135:0.474:2	./.	0/1:53,43:31:97:0.448:2	0/1:1,82:31:83:0.988:2	0/1:68,63:31:131:0.481:2	0/1:0,143:33:143:1.00:2	0/1:0,116:31:116:1.00:2	0/1:67,60:32:127:0.472:2
chr1	221912808	rs1136448	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:72,60:30:132:0.455:2	0/1:35,35:32:70:0.500:2	./.	./.	./.	./.	0/1:92,71:31:163:0.436:2	0/1:105,71:32:176:0.403:2	0/1:1,158:32:159:0.994:2	0/1:93,72:31:165:0.436:2	0/1:97,54:30:151:0.358:2
chr1	222713501	rs3748663	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,85:31:86:0.988:2	0/1:40,45:33:85:0.529:2	0/1:18,21:32:39:0.538:2	./.
chr1	222713503	rs3748664	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:39,3:32:42:0.071:2	0/1:0,8:32:8:1.00:2	./.	0/1:31,18:32:49:0.367:2	./.	./.	./.	./.	./.	./.
chr1	222713621	rs3748665	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,79:32:80:0.988:2	0/1:42,47:33:90:0.528:2	0/1:33,23:33:56:0.411:2	./.
chr1	222713631	rs3748666	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:33:5:1.00:2	0/1:87,4:32:91:0.044:2	0/1:33,21:32:54:0.389:2	./.	./.	./.	./.	./.	./.
chr1	222717234	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:33:95:0.042:2	./.	./.
chr1	222721288	rs4846382	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:33:6:0.500:2	0/1:38,31:32:69:0.449:2	0/1:2,56:30:58:0.966:2	./.	0/1:1,72:31:73:0.986:2	./.	0/1:0,71:33:71:1.00:2	0/1:23,28:32:51:0.549:2	0/1:36,34:32:70:0.486:2
chr1	222732027	rs76003336	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,18:32:34:0.529:2	./.	./.	./.	./.	./.
chr1	222734722	rs200153576	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,9:17:46:0.196:2	./.	0/1:43,11:16:54:0.204:2	./.	0/1:28,6:18:34:0.176:2	0/1:51,5:23:56:0.089:2
chr1	222734803	rs1134898	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,35:33:74:0.473:2	0/1:30,20:32:50:0.400:2	0/1:52,33:32:85:0.388:2	0/1:2,53:32:55:0.964:2	./.	0/1:0,80:33:80:1.00:2	0/1:44,40:32:84:0.476:2	0/1:56,44:32:100:0.440:2
chr1	222737481	rs17464254	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:32:9:0.556:2	./.	0/1:43,32:32:75:0.427:2	./.	./.	./.	./.	./.	./.
chr1	222743984	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,4:26:23:0.174:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	222798106	rs3008617	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:31:77:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,4:28:4:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,93:30:93:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,105:31:105:1.00:2
chr1	222801661	rs142088763	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,18:32:59:0.310:2	./.	./.	./.	./.
chr1	222801665	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,18:31:58:0.310:2	./.	./.	./.	./.
chr1	222802006	rs2936053	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:33:62:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,69:33:69:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,67:33:67:1.00:2	0/1:0,45:33:45:1.00:2	0/1:0,83:33:83:1.00:2
chr1	222802376	rs2936052	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,32:32:47:0.681:2	./.	./.	./.	./.	./.
chr1	222802517	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:31:67:0.060:2	./.	./.	./.
chr1	222802549	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,26:29:54:0.481:2	./.	./.	./.	./.	./.
chr1	222802803	rs3748626	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,17:29:48:0.354:2	0/1:7,7:26:14:0.500:2	./.	0/1:23,13:28:36:0.361:2	0/1:0,23:28:23:1.00:2	0/1:23,8:30:31:0.258:2	0/1:0,35:28:35:1.00:2	0/1:1,34:28:35:0.971:2	0/1:2,42:29:44:0.955:2	0/1:17,8:26:25:0.320:2	0/1:36,20:27:56:0.357:2
chr1	222802926	rs3008620	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,22:32:73:0.301:2	0/1:20,18:32:38:0.474:2	0/1:11,3:31:14:0.214:2	0/1:42,39:30:81:0.481:2	0/1:0,56:30:56:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,78:32:78:1.00:2	0/1:53,26:30:79:0.329:2	0/1:49,53:31:102:0.520:2
chr1	222803204	rs2936051	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,28:31:50:0.560:2	./.	./.	./.	./.	./.
chr1	222825403	rs3002150	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,52:31:52:1.00:2
chr1	222833538	rs2291835	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,70:32:149:0.470:2	./.	./.	./.
chr1	222833601	rs3002153	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:29:75:1.00:2	0/1:0,46:29:46:1.00:2	0/1:0,10:29:10:1.00:2	0/1:1,100:29:101:0.990:2	0/1:2,86:29:88:0.977:2	0/1:0,100:29:100:1.00:2	0/1:1,91:30:92:0.989:2	0/1:0,120:29:120:1.00:2	0/1:0,118:31:118:1.00:2	0/1:0,91:30:91:1.00:2	0/1:0,109:29:109:1.00:2
chr1	222838216	rs2936026	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:32:92:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,92:31:92:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,118:31:118:1.00:2	0/1:1,75:31:76:0.987:2	0/1:0,73:31:73:1.00:2	0/1:0,143:32:143:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,137:32:137:1.00:2
chr1	222843496	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:31:197:0.025:2	0/1:190,5:33:195:0.026:2	./.	./.
chr1	222843559	rs200516684	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:141,4:33:145:0.028:2	./.	./.	0/1:139,6:32:145:0.041:2	0/1:82,6:31:88:0.068:2	./.	0/1:108,5:32:113:0.044:2	0/1:144,5:32:149:0.034:2	0/1:138,10:31:148:0.068:2	./.	0/1:172,9:31:181:0.050:2
chr1	222849536	rs111707998	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2
chr1	222885591	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:31:120:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	222919895	rs2378607	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,30:33:57:0.526:2	0/1:15,24:32:39:0.615:2	./.	0/1:29,21:32:50:0.420:2	0/1:0,17:32:17:1.00:2	0/1:26,22:33:48:0.458:2	0/1:0,44:33:44:1.00:2	0/1:1,53:32:54:0.981:2	0/1:2,51:33:53:0.962:2	0/1:33,27:33:60:0.450:2	0/1:42,20:31:62:0.323:2
chr1	222923351	rs6683071	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:30:46:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,83:29:83:1.00:2	0/1:0,82:29:82:1.00:2	0/1:64,41:29:105:0.390:2	0/1:0,81:30:81:1.00:2	0/1:2,94:29:96:0.979:2	0/1:0,89:29:89:1.00:2	0/1:2,74:29:76:0.974:2	0/1:0,72:30:72:1.00:2
chr1	223116240	rs61746477	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,51:32:112:0.455:2	0/1:50,51:32:101:0.505:2	./.
chr1	223176275	rs61738819	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,60:30:191:0.314:2	./.	0/1:117,79:32:196:0.403:2	./.	./.
chr1	223177194	rs201957626	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:32:101:0.040:2	./.	./.	./.
chr1	223177574	rs2609355	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,46:33:103:0.447:2	./.	./.	0/1:55,60:34:115:0.522:2	./.	0/1:55,72:33:127:0.567:2
chr1	223178478	rs9441940	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,79:32:165:0.479:2	./.	0/1:76,68:32:145:0.472:2	./.	./.
chr1	223178561	rs9441941	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:30:96:1.00:2	0/1:0,57:29:57:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,185:29:185:1.00:2	0/1:2,170:29:172:0.988:2	0/1:118,63:30:181:0.348:2	0/1:3,165:30:169:0.982:2	0/1:0,161:29:161:1.00:2	0/1:94,71:30:165:0.430:2	0/1:71,63:30:134:0.470:2	0/1:100,77:29:177:0.435:2
chr1	223283851	rs1053954	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,30:33:60:0.500:2	./.	0/1:38,45:34:83:0.542:2	./.	./.
chr1	223283910	rs7512943	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:33:59:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,76:33:76:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,60:33:60:1.00:2
chr1	223284069	rs56243703	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,62:33:158:0.392:2	./.	./.	./.	./.	./.	./.	./.
chr1	223284124	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:166,4:32:170:0.024:2	./.	./.	./.	./.	./.	./.
chr1	223284214	rs142143294	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,54:31:146:0.375:2	./.
chr1	223284528	rs5744174	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:41,29:33:70:0.414:2	0/1:12,18:32:30:0.600:2	./.	./.	0/1:28,19:33:47:0.404:2	./.	./.	./.	0/1:51,33:34:84:0.393:2	0/1:0,53:32:53:1.00:2	0/1:54,27:33:81:0.333:2
chr1	223284599	rs2072493	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,46:31:91:0.511:2	0/1:48,55:33:103:0.534:2	0/1:3,82:33:85:0.965:2	./.	./.	./.
chr1	223285200	rs5744168	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,17:32:35:0.486:2	0/1:39,28:33:67:0.418:2
chr1	223285646	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:31:119:0.034:2	./.
chr1	223285833	rs45528236	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,37:33:58:0.638:2	0/1:69,30:32:99:0.303:2
chr1	223286191	rs5744165	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,39:29:79:0.494:2
chr1	223566859	rs111306873	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.
chr1	223567267	rs6679661	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:21,20:31:41:0.488:2	0/1:17,11:31:29:0.393:2	./.	./.	./.	./.	./.	./.	./.	0/1:34,13:33:47:0.277:2	./.
chr1	223567401	rs6689850	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:50,54:28:104:0.519:2	0/1:32,27:30:59:0.458:2	./.	./.	./.	./.	./.	./.	./.	0/1:63,48:29:111:0.432:2	./.
chr1	223567531	rs2298063	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:54,46:31:100:0.460:2	0/1:30,32:31:62:0.516:2	./.	./.	./.	./.	./.	./.	./.	0/1:51,48:31:99:0.485:2	./.
chr1	223567803	rs10907376	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,7:30:20:0.350:2	0/1:9,10:31:19:0.526:2	./.	0/1:27,22:30:49:0.449:2	0/1:0,33:28:33:1.00:2	./.	0/1:9,9:29:18:0.500:2	./.	./.	./.	0/1:11,3:27:14:0.214:2
chr1	223567808	rs6682552	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:8,12:29:20:0.600:2	0/1:10,8:30:18:0.444:2	./.	./.	./.	./.	./.	./.	./.	0/1:9,8:31:17:0.471:2	./.
chr1	223716508	rs4072247	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,23:31:42:0.548:2	./.	./.	./.	./.	./.	./.
chr1	223717484	rs34158997	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:30:32:1.00:2	0/1:0,16:32:16:1.00:2	0/1:6,4:31:10:0.400:2	0/1:2,65:31:67:0.970:2	0/1:51,50:31:101:0.495:2	0/1:35,34:30:69:0.493:2	0/1:49,40:32:89:0.449:2	0/1:0,71:31:71:1.00:2	0/1:30,23:31:53:0.434:2	0/1:29,28:32:57:0.491:2	0/1:28,14:32:42:0.333:2
chr1	223718651	rs61823553	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:1,50:31:51:0.980:2	0/1:1,15:31:16:0.938:2	0/1:3,4:32:7:0.571:2	./.	./.	0/1:8,19:32:27:0.704:2	./.	0/1:0,24:31:24:1.00:2	./.	0/1:14,24:31:38:0.632:2	0/1:23,25:31:48:0.521:2
chr1	223718670	rs61823554	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,40:32:40:1.00:2	0/1:0,11:30:11:1.00:2	0/1:1,4:32:5:0.800:2	./.	./.	0/1:9,13:32:22:0.591:2	./.	0/1:0,15:31:15:1.00:2	./.	0/1:13,17:32:30:0.567:2	0/1:17,21:32:38:0.553:2
chr1	223722760	rs34588801	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,23:31:43:0.535:2	./.	./.	./.	./.	./.	./.	./.
chr1	223813586	rs35539373	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,24:29:59:0.407:2	0/1:19,19:31:38:0.500:2	0/1:0,2:28:2:1.00:2	0/1:1,82:30:83:0.988:2	0/1:22,24:28:46:0.522:2	./.	0/1:41,36:30:77:0.468:2	0/1:54,36:29:90:0.400:2	0/1:0,74:31:74:1.00:2	0/1:27,14:30:41:0.341:2	0/1:31,35:30:66:0.530:2
chr1	223816383	rs71644745	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,15:32:55:0.273:2	./.	./.	./.	./.	./.	./.	./.
chr1	223900408	rs25655	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:31:27:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,56:30:56:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,28:31:28:1.00:2
chr1	223905532	rs17596	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:16,17:32:33:0.515:2	0/1:15,13:31:28:0.464:2	0/1:0,4:31:4:1.00:2	./.	0/1:0,38:32:38:1.00:2	0/1:0,40:31:40:1.00:2	0/1:25,16:31:41:0.390:2	0/1:1,36:31:37:0.973:2	0/1:22,27:32:49:0.551:2	0/1:28,17:32:45:0.378:2	0/1:0,51:31:51:1.00:2
chr1	223933061	rs17597	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,43:31:97:0.443:2	./.	./.	./.	./.	./.	./.	./.
chr1	223933079	rs17598	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,42:31:91:0.462:2	./.	./.	./.	./.	./.	./.	./.
chr1	223934720	rs17600	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:31:55:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,6:32:6:1.00:2	0/1:31,24:32:55:0.436:2	0/1:1,59:31:60:0.983:2	0/1:0,68:31:68:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,76:31:76:1.00:2
chr1	223947088	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:33:48:0.083:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	223951841	rs751128	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,8:29:13:0.615:2	0/1:88,82:29:170:0.482:2	./.	0/1:86,91:30:177:0.514:2	0/1:90,92:30:182:0.505:2	0/1:0,192:30:192:1.00:2	0/1:89,86:31:175:0.491:2	0/1:65,81:30:146:0.555:2	./.
chr1	223954080	rs17599	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:57,65:33:122:0.533:2	0/1:26,24:33:50:0.480:2	./.	./.	0/1:58,52:32:110:0.473:2	0/1:75,45:32:120:0.375:2	0/1:52,65:32:117:0.556:2	./.	0/1:84,81:33:165:0.491:2	./.	./.
chr1	223959959	rs1153949	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,22:30:40:0.550:2	0/1:7,4:31:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	223971997	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,14:17:136:0.103:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	223980207	rs1153936	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,26:34:65:0.400:2	0/1:30,29:32:59:0.492:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	223983630	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,38:33:74:0.514:2	./.	./.	./.	./.	./.	./.	./.
chr1	223989966	rs1153933	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,19:32:55:0.345:2	0/1:13,10:32:23:0.435:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	223991119	rs34683843	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,33:32:81:0.407:2	./.	./.	./.	./.	./.	./.	./.
chr1	224001963	rs76208122	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,9:29:23:0.391:2	./.	./.	./.	./.	./.
chr1	224363674	rs200913375	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,14:17:87:0.161:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	224363683	rs45522536	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,75:32:76:0.987:2	0/1:0,35:31:35:1.00:2	./.	./.	0/1:64,30:31:94:0.319:2	./.	0/1:50,32:32:82:0.390:2	./.	./.	./.	./.
chr1	224377996	rs61732863	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,46:32:106:0.434:2	./.	./.	./.	./.	./.
chr1	224415342	rs41271483	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,18:33:28:0.643:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	224492746	rs3754090	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,141:32:141:1.00:2	0/1:0,99:31:100:1.00:2	0/1:0,15:31:15:1.00:2	0/1:103,92:31:195:0.472:2	0/1:0,106:30:106:1.00:2	0/1:1,188:30:189:0.995:2	0/1:0,156:30:156:1.00:2	0/1:2,189:31:191:0.990:2	0/1:0,175:31:175:1.00:2	0/1:2,115:31:118:0.983:2	0/1:0,183:31:183:1.00:2
chr1	224495852	rs7534447	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,144:32:144:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,14:29:14:1.00:2	0/1:93,96:31:189:0.508:2	0/1:0,78:31:78:1.00:2	0/1:1,153:31:154:0.994:2	0/1:1,115:31:117:0.991:2	0/1:0,164:31:164:1.00:2	0/1:1,123:32:124:0.992:2	0/1:0,153:31:153:1.00:2	0/1:0,183:32:183:1.00:2
chr1	224517842	rs2896990	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,14:29:14:1.00:2	0/1:0,12:30:12:1.00:2	./.	0/1:14,24:28:38:0.632:2	0/1:0,50:28:50:1.00:2	0/1:0,29:27:29:1.00:2	0/1:0,46:27:46:1.00:2	0/1:1,41:26:42:0.976:2	0/1:1,43:30:44:0.977:2	0/1:0,21:29:21:1.00:2	0/1:1,37:28:38:0.974:2
chr1	224586628	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,4:33:192:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr1	224599205	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:32:175:0.023:2	./.	./.	./.	./.
chr1	224619211	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr1	224872473	rs3738363	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,85:28:196:0.434:2	./.	0/1:109,88:28:198:0.447:2	./.	./.	./.	0/1:0,184:29:184:1.00:2	0/1:98,93:28:191:0.487:2
chr1	225142710	rs41267347	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,47:31:87:0.540:2	0/1:35,25:30:60:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	225152253	rs41267349	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,44:33:79:0.557:2	0/1:28,20:32:48:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	225195154	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:33:199:0.020:2	./.	./.
chr1	225211422	rs75568712	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,55:33:130:0.423:2	0/1:44,40:32:84:0.476:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	225230608	rs2501107	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,79:32:81:0.975:2	0/1:0,35:32:35:1.00:2	0/1:11,4:31:15:0.267:2	0/1:1,93:31:94:0.989:2	0/1:2,43:31:45:0.956:2	0/1:0,69:30:69:1.00:2	0/1:36,19:31:55:0.345:2	0/1:0,67:31:67:1.00:2	0/1:2,87:32:89:0.978:2	0/1:0,75:31:75:1.00:2	0/1:0,119:32:119:1.00:2
chr1	225266966	rs3105559	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:32:31:1.00:2	0/1:0,17:32:17:1.00:2	0/1:2,3:33:5:0.600:2	0/1:0,37:33:37:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,28:32:28:1.00:2	0/1:25,25:32:51:0.500:2	0/1:1,34:33:35:0.971:2	0/1:0,34:33:34:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,57:32:57:1.00:2
chr1	225268098	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,33:30:84:0.398:2	./.	./.	./.
chr1	225268343	rs3128651	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:32:77:1.00:2	0/1:0,39:32:39:1.00:2	0/1:2,7:32:9:0.778:2	0/1:0,47:32:47:1.00:2	0/1:1,53:31:54:0.981:2	0/1:0,66:32:66:1.00:2	0/1:27,27:32:54:0.500:2	0/1:2,53:31:55:0.964:2	0/1:0,82:32:82:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,78:32:78:1.00:2
chr1	225268346	rs3128652	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:32:77:1.00:2	0/1:0,39:31:39:1.00:2	0/1:1,7:31:8:0.875:2	0/1:0,48:31:48:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,70:31:70:1.00:2	0/1:27,27:32:54:0.500:2	0/1:2,54:31:56:0.964:2	0/1:0,81:32:81:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,79:32:79:1.00:2
chr1	225270409	rs3128655	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,23:31:47:0.489:2	0/1:23,12:31:35:0.343:2	0/1:0,4:28:4:1.00:2	0/1:0,57:29:57:1.00:2	0/1:0,39:29:39:1.00:2	0/1:1,60:29:61:0.984:2	0/1:20,20:28:40:0.500:2	0/1:1,65:29:66:0.985:2	0/1:0,53:31:53:1.00:2	0/1:2,33:29:35:0.943:2	0/1:0,90:30:90:1.00:2
chr1	225273248	rs3128658	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:0,47:32:47:1.00:2	0/1:8,4:31:12:0.333:2	0/1:0,41:31:41:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,57:31:57:1.00:2	0/1:25,28:31:53:0.528:2	0/1:1,68:31:69:0.986:2	0/1:0,55:32:55:1.00:2	0/1:1,52:32:53:0.981:2	0/1:0,76:32:76:1.00:2
chr1	225288534	rs3105571	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:33:8:0.500:2	./.	./.	./.	0/1:31,43:32:74:0.581:2	./.	./.	./.	./.
chr1	225306982	rs150618371	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,25:31:50:0.500:2	./.	./.	./.	./.
chr1	225311312	rs76946626	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,38:31:62:0.613:2	0/1:19,20:32:39:0.513:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	225328440	rs75827633	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:34:3:1.00:2	0/1:4,4:34:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	225373072	rs61851487	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,14:33:47:0.298:2	./.	./.	./.	./.
chr1	225380564	rs191528375	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:32:11:0.636:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	225446838	rs41303311	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,48:33:91:0.533:2	./.	./.
chr1	225452983	rs76767146	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,27:32:84:0.321:2	0/1:17,22:32:39:0.564:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	225454403	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,26:32:50:0.520:2	./.	./.
chr1	225463772	rs581675	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,19:32:42:0.452:2	./.	./.	./.	./.
chr1	225490915	rs140066130	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,68:33:123:0.553:2	./.	./.
chr1	225495168	rs112172758	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,29:32:72:0.403:2	0/1:19,17:32:36:0.472:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	225506294	rs10495237	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,14:29:37:0.378:2	./.	./.	./.	./.
chr1	225506328	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:31:58:0.069:2	./.
chr1	225519246	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.	./.
chr1	225521101	rs41268715	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,29:33:54:0.537:2	0/1:13,25:32:38:0.658:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	225528183	rs3856145	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,135:31:137:0.985:2	0/1:73,28:31:101:0.277:2	0/1:96,52:31:148:0.351:2	0/1:73,30:31:103:0.291:2	0/1:115,48:31:163:0.294:2	0/1:131,63:32:194:0.325:2	./.	0/1:2,157:31:159:0.987:2
chr1	225533684	rs6667999	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,106:30:106:1.00:2	0/1:31,26:28:57:0.456:2	0/1:51,35:29:87:0.407:2	0/1:47,25:30:72:0.347:2	0/1:42,42:30:84:0.500:2	0/1:51,62:31:113:0.549:2	./.	0/1:0,94:30:94:1.00:2
chr1	225533731	rs12742757	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,45:30:59:0.763:2	./.	./.	./.	./.
chr1	225533931	rs17522489	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,37:30:61:0.607:2	0/1:21,20:32:41:0.488:2	./.	0/1:31,32:31:63:0.508:2
chr1	225534219	rs7527925	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,134:33:134:1.00:2	0/1:60,38:32:98:0.388:2	0/1:90,61:32:151:0.404:2	0/1:51,48:33:99:0.485:2	0/1:86,73:32:159:0.459:2	0/1:86,73:34:159:0.459:2	./.	0/1:0,167:33:167:1.00:2
chr1	225534348	rs7535953	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,52:31:54:0.963:2	0/1:21,24:31:45:0.533:2	0/1:38,35:31:73:0.479:2	0/1:24,26:31:50:0.520:2	0/1:33,44:31:77:0.571:2	0/1:33,35:32:68:0.515:2	./.	0/1:0,95:31:95:1.00:2
chr1	225555512	rs11578981	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,11:32:30:0.367:2	0/1:9,8:33:17:0.471:2	./.	0/1:0,27:33:27:1.00:2	0/1:8,8:32:16:0.500:2	./.	0/1:6,17:33:23:0.739:2	0/1:3,27:32:30:0.900:2	0/1:18,10:33:28:0.357:2	0/1:0,12:33:12:1.00:2	./.
chr1	225555602	rs12737248	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,21:32:39:0.538:2	0/1:10,7:30:17:0.412:2	0/1:1,5:33:6:0.833:2	0/1:0,33:33:33:1.00:2	0/1:14,15:33:29:0.517:2	./.	0/1:16,4:30:20:0.200:2	0/1:6,53:32:59:0.898:2	0/1:42,17:33:59:0.288:2	0/1:0,24:32:24:1.00:2	./.
chr1	225565015	rs3856154	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,53:32:117:0.453:2	0/1:43,26:32:69:0.377:2	0/1:0,15:32:15:1.00:2	0/1:0,92:32:92:1.00:2	0/1:59,47:31:106:0.443:2	0/1:62,66:31:128:0.516:2	0/1:72,71:33:143:0.497:2	0/1:1,128:33:129:0.992:2	0/1:91,60:33:151:0.397:2	0/1:2,93:32:95:0.979:2	./.
chr1	225565073	rs3856155	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,42:30:100:0.420:2	0/1:41,22:31:63:0.349:2	0/1:0,10:30:10:1.00:2	0/1:0,74:30:75:1.00:2	0/1:40,40:29:81:0.500:2	0/1:59,56:29:115:0.487:2	0/1:60,37:30:97:0.381:2	0/1:4,91:31:95:0.958:2	0/1:81,58:31:139:0.417:2	0/1:1,85:31:86:0.988:2	./.
chr1	225569241	rs950210	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,38:33:84:0.452:2	0/1:34,34:32:68:0.500:2	0/1:0,19:32:19:1.00:2	0/1:4,105:32:109:0.963:2	0/1:17,35:32:52:0.673:2	0/1:45,48:32:93:0.516:2	0/1:28,45:32:73:0.616:2	0/1:0,128:32:128:1.00:2	0/1:51,81:33:132:0.614:2	0/1:0,91:33:91:1.00:2	./.
chr1	225580032	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:170,4:32:174:0.023:2	./.	./.	./.	./.	./.	./.
chr1	225607144	rs2230419	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,6:31:6:1.00:2	0/1:1,52:31:53:0.981:2	0/1:0,47:31:47:1.00:2	0/1:48,15:31:63:0.238:2	0/1:0,33:31:33:1.00:2	0/1:0,70:31:70:1.00:2	0/1:40,27:32:67:0.403:2	0/1:0,45:32:45:1.00:2	0/1:69,43:31:112:0.384:2
chr1	225609884	rs1056608	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,26:30:28:0.929:2	0/1:0,13:32:13:1.00:2	0/1:0,4:24:4:1.00:2	0/1:0,32:28:32:1.00:2	0/1:0,41:28:41:1.00:2	0/1:19,12:29:31:0.387:2	0/1:1,39:29:40:0.975:2	0/1:0,22:28:22:1.00:2	0/1:16,15:30:31:0.484:2	0/1:0,32:29:33:1.00:2	0/1:14,15:29:29:0.517:2
chr1	225611661	rs1056607	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,41:31:95:0.432:2	0/1:25,29:32:54:0.537:2	0/1:10,7:30:17:0.412:2	0/1:0,110:31:110:1.00:2	0/1:26,35:30:61:0.574:2	0/1:56,26:30:82:0.317:2	0/1:31,46:31:77:0.597:2	0/1:0,91:30:91:1.00:2	0/1:46,47:32:93:0.505:2	0/1:0,55:30:55:1.00:2	0/1:1,90:31:91:0.989:2
chr1	225685473	rs17501138	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,48:33:109:0.440:2
chr1	225688725	rs141150172	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,25:31:66:0.379:2	./.	./.	./.	./.	./.	./.
chr1	225705501	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,40:31:122:0.328:2	./.	./.	./.	./.	./.
chr1	225706943	rs1340868	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,42:33:119:0.353:2
chr1	225707051	rs140432837	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:31:56:0.071:2	./.
chr1	225707087	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,8:32:93:0.086:2	0/1:48,4:32:52:0.077:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	226019497	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:29:67:0.060:2	./.	./.	./.	./.	./.
chr1	226019500	rs2234698	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:32:9:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	226019633	rs1051740	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,27:30:49:0.551:2	0/1:17,19:32:36:0.528:2	0/1:4,3:32:7:0.429:2	0/1:45,22:32:67:0.328:2	0/1:31,29:30:60:0.483:2	0/1:26,34:31:60:0.567:2	./.	./.	./.	./.	0/1:0,85:30:85:1.00:2
chr1	226019653	rs1131873	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,24:31:62:0.387:2	0/1:1,16:31:17:0.941:2	./.	./.	./.	./.
chr1	226026406	rs2234922	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,18:27:48:0.375:2	0/1:18,12:27:30:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	226027659	rs2292568	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:31:14:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	226032229	rs1051741	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,23:32:51:0.451:2	0/1:11,21:32:32:0.656:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	226034774	rs2292559	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:33:10:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	226040404	rs1009668	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,9:29:22:0.409:2	0/1:92,66:31:158:0.418:2	./.	./.	./.	./.	./.	./.	./.
chr1	226041438	rs2292556	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,11:32:17:0.647:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	226041489	rs61753643	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,35:30:82:0.427:2	./.	./.	./.	./.	./.
chr1	226044391	rs140423726	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,7:32:25:0.280:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	226046974	rs2292561	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,7:32:16:0.438:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	226054333	rs45492299	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:44,32:33:76:0.421:2	0/1:34,15:32:49:0.306:2	./.	./.	0/1:65,47:31:112:0.420:2	0/1:49,49:32:98:0.500:2	0/1:68,39:32:107:0.364:2	./.	./.	./.	0/1:0,75:33:75:1.00:2
chr1	226055595	rs2292564	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,39:31:39:1.00:2	0/1:0,23:32:23:1.00:2	./.	./.	0/1:49,37:31:86:0.430:2	0/1:36,29:30:65:0.446:2	0/1:62,45:31:107:0.421:2	./.	./.	./.	0/1:0,79:32:79:1.00:2
chr1	226074563	rs360057	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,7:32:17:0.412:2	0/1:73,68:31:142:0.482:2	0/1:68,43:32:111:0.387:2	./.	./.	0/1:91,75:32:166:0.452:2	0/1:0,124:33:124:1.00:2	./.	./.
chr1	226076669	rs41310561	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:33:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	226108200	rs73131849	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,5:28:7:0.714:2	0/1:1,46:31:47:0.979:2	./.	./.	./.	./.	./.	./.	./.
chr1	226125385	rs2295418	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,38:31:87:0.437:2	0/1:39,34:32:73:0.466:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	226175904	rs41268719	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,66:30:138:0.478:2	./.	./.	./.	./.	./.	./.	./.
chr1	226340217	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:33:168:0.024:2
chr1	226352498	rs111701159	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:100,82:32:182:0.451:2	0/1:74,48:31:122:0.393:2	0/1:21,20:32:41:0.488:2	0/1:1,178:32:179:0.994:2	0/1:66,105:32:171:0.614:2	0/1:76,101:32:177:0.571:2	0/1:104,90:32:194:0.464:2	0/1:1,165:32:166:0.994:2	0/1:106,84:33:190:0.442:2	0/1:76,104:32:182:0.578:2	0/1:103,72:33:176:0.411:2
chr1	226352599	rs143911859	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,49:34:107:0.458:2	./.	./.
chr1	226474132	rs10799347	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,18:32:28:0.643:2	0/1:15,7:32:22:0.318:2	0/1:2,4:31:6:0.667:2	0/1:0,27:32:27:1.00:2	0/1:6,8:32:14:0.571:2	0/1:26,17:31:43:0.395:2	./.	0/1:0,17:31:17:1.00:2	0/1:34,9:32:43:0.209:2	0/1:17,16:31:33:0.485:2	0/1:0,42:32:42:1.00:2
chr1	226552821	rs182639036	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,25:32:83:0.301:2	./.	./.	./.	./.
chr1	226555302	rs1136410	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,43:31:78:0.551:2	./.	./.	./.	0/1:45,19:33:64:0.297:2	0/1:31,26:30:57:0.456:2	./.
chr1	226561948	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,6:32:128:0.047:2	./.
chr1	226561949	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,6:33:130:0.046:2	./.
chr1	226562006	rs145186011	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,6:31:148:0.041:2	./.
chr1	226570840	rs1805415	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,44:32:45:1.00:2	0/1:0,19:32:19:1.00:2	./.	0/1:0,24:32:24:1.00:2	0/1:14,13:32:27:0.481:2	0/1:1,17:30:18:0.944:2	0/1:0,29:31:29:1.00:2	0/1:0,17:30:17:1.00:2	0/1:17,9:36:26:0.346:2	0/1:13,9:32:22:0.409:2	0/1:0,33:31:33:1.00:2
chr1	226573364	rs1805414	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:25,24:31:49:0.490:2	0/1:21,10:28:31:0.323:2	./.	./.	0/1:0,57:30:57:1.00:2	./.	0/1:44,31:31:75:0.413:2	0/1:51,33:30:84:0.393:2	0/1:45,33:32:78:0.423:2	0/1:16,14:30:30:0.467:2	0/1:31,18:31:49:0.367:2
chr1	226589833	rs1805407	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:36,21:32:57:0.368:2	0/1:11,15:33:26:0.577:2	./.	./.	0/1:36,29:31:65:0.446:2	./.	0/1:51,32:32:84:0.386:2	0/1:52,29:31:81:0.358:2	./.	./.	0/1:49,32:31:81:0.395:2
chr1	226589958	rs1805404	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,16:31:43:0.372:2	./.	./.	./.	0/1:24,21:32:45:0.467:2	0/1:15,17:31:32:0.531:2	./.
chr1	226822470	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:193,4:33:197:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr1	226836459	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,9:30:99:0.091:2	./.	./.	./.	./.	./.	./.	./.
chr1	226923264	rs708775	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,147:32:149:0.987:2	0/1:96,75:33:171:0.439:2	0/1:75,55:33:130:0.423:2	./.
chr1	226923505	rs708776	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:32:37:1.00:2	0/1:0,19:31:19:1.00:2	0/1:2,3:32:5:0.600:2	0/1:0,53:32:53:1.00:2	0/1:0,45:31:45:1.00:2	0/1:1,46:32:47:0.979:2	0/1:0,68:32:68:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,51:33:51:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,50:32:50:1.00:2
chr1	226923938	rs6667260	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,20:32:47:0.426:2	0/1:23,15:34:38:0.395:2	0/1:35,20:33:55:0.364:2	0/1:0,38:31:38:1.00:2	0/1:30,28:33:58:0.483:2	0/1:24,15:30:39:0.385:2	0/1:6,13:33:19:0.684:2
chr1	226924642	rs3754415	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,17:30:21:0.810:2	0/1:11,8:26:19:0.421:2	0/1:4,9:27:13:0.692:2	./.	./.	./.	0/1:4,5:25:9:0.556:2
chr1	226924651	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,3:31:32:0.094:2	./.	./.	./.
chr1	227069677	rs11405	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,76:28:76:1.00:2	0/1:0,33:28:33:1.00:2	./.	./.	0/1:61,43:26:104:0.413:2	0/1:0,73:27:73:1.00:2	0/1:54,37:26:91:0.407:2	0/1:0,112:27:112:1.00:2	0/1:49,42:27:91:0.462:2	./.	0/1:50,46:27:96:0.479:2
chr1	227069737	rs6759	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,28:30:50:0.560:2	0/1:17,10:31:27:0.370:2	./.	./.	./.	0/1:26,19:27:45:0.422:2	0/1:35,23:28:58:0.397:2	0/1:40,30:29:70:0.429:2	0/1:23,19:29:42:0.452:2	./.	0/1:29,25:29:54:0.463:2
chr1	227071525	rs1046240	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:45,33:31:78:0.423:2	0/1:37,23:32:60:0.383:2	0/1:10,12:32:22:0.545:2	./.	./.	0/1:62,57:31:119:0.479:2	0/1:110,65:31:175:0.371:2	0/1:63,92:31:155:0.594:2	0/1:69,62:32:131:0.473:2	./.	0/1:44,45:32:89:0.506:2
chr1	227076671	rs61730652	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,85:30:189:0.450:2	./.	./.	./.
chr1	227083200	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:187,4:33:191:0.021:2	./.	./.	./.	./.	./.	./.
chr1	227149149	rs11549709	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,55:31:117:0.470:2	./.	./.	./.	./.	./.
chr1	227149203	rs11549708	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,83:32:180:0.461:2	0/1:99,87:32:186:0.468:2	0/1:113,78:32:191:0.408:2	0/1:86,91:33:177:0.514:2	0/1:74,67:32:141:0.475:2	./.
chr1	227153002	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,4:32:51:0.078:2	./.	./.	./.	./.	./.	./.
chr1	227153073	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:31:44:0.091:2
chr1	227170718	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,12:31:13:0.923:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	227172290	rs12593	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:32:10:0.500:2	0/1:57,28:31:85:0.329:2	./.	0/1:51,53:32:104:0.510:2	0/1:76,42:31:118:0.356:2	0/1:67,40:32:107:0.374:2	0/1:43,47:32:91:0.522:2	0/1:34,38:32:72:0.528:2	./.
chr1	227174210	rs3738725	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,3:33:9:0.333:2	0/1:24,17:31:41:0.415:2	./.	0/1:20,25:31:45:0.556:2	0/1:19,20:31:39:0.513:2	0/1:28,22:30:50:0.440:2	0/1:37,24:32:61:0.393:2	0/1:17,15:31:32:0.469:2	0/1:21,13:30:34:0.382:2
chr1	227182033	rs2802269	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:31:48:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,52:31:52:1.00:2	0/1:26,31:31:57:0.544:2	0/1:1,41:31:42:0.976:2	0/1:16,29:31:46:0.644:2
chr1	227182575	rs1045247	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,17:28:38:0.447:2	0/1:4,14:28:18:0.778:2	0/1:0,5:28:5:1.00:2	0/1:0,48:28:48:1.00:2	0/1:0,49:28:49:1.00:2	0/1:34,14:27:48:0.292:2	0/1:0,49:28:49:1.00:2	0/1:33,35:29:68:0.515:2	0/1:0,54:29:54:1.00:2	0/1:0,31:29:31:1.00:2	0/1:1,52:28:53:0.981:2
chr1	227198737	rs116416229	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,37:32:72:0.514:2	./.	./.	./.
chr1	227211040	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,2:35:5:0.400:2	./.
chr1	227216662	rs1929861	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,10:34:22:0.455:2	0/1:2,3:34:5:0.600:2	0/1:0,2:32:2:1.00:2	0/1:0,27:33:27:1.00:2	./.	0/1:6,8:33:14:0.571:2	0/1:0,11:31:11:1.00:2	./.	0/1:16,16:33:32:0.500:2	0/1:0,16:32:16:1.00:2	0/1:18,12:32:30:0.400:2
chr1	227216775	rs1929860	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:8,10:31:18:0.556:2	0/1:5,7:33:12:0.583:2	./.	0/1:1,23:31:24:0.958:2	./.	./.	./.	./.	./.	0/1:15,12:32:27:0.444:2	0/1:13,13:33:26:0.500:2
chr1	227221123	rs11582863	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,14:32:22:0.636:2	0/1:104,54:32:158:0.342:2	./.	./.	./.	./.	./.	./.	./.
chr1	227261648	rs35017425	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,35:32:81:0.432:2	./.
chr1	227261999	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:34:89:0.045:2	./.	./.	./.	./.	./.
chr1	227327388	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:30:74:0.054:2	./.	./.
chr1	227504794	rs11804613	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:38,55:30:93:0.591:2	0/1:19,33:30:52:0.635:2	./.	0/1:42,53:31:95:0.558:2	./.	./.	0/1:80,55:30:135:0.407:2	./.	./.	0/1:39,32:30:71:0.451:2	0/1:44,38:29:82:0.463:2
chr1	227843003	rs61740826	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,13:30:17:0.765:2	./.	./.	./.	./.	./.
chr1	227843384	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,18:30:36:0.500:2
chr1	227920103	rs3087908	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:85,73:31:159:0.462:2	0/1:45,55:31:100:0.550:2	./.	./.	0/1:99,96:31:195:0.492:2	./.	0/1:116,75:30:191:0.393:2	0/1:80,110:31:190:0.579:2	0/1:99,95:32:194:0.490:2	./.	./.
chr1	227920186	rs35575794	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,66:30:112:0.589:2	./.
chr1	227920357	rs4837	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:33:2:1.00:2	0/1:11,8:32:19:0.421:2	./.	0/1:10,13:32:23:0.565:2	./.	./.	./.	0/1:10,6:31:16:0.375:2	./.
chr1	227920665	rs41270159	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:32,19:34:51:0.373:2	0/1:13,12:33:25:0.480:2	./.	0/1:51,30:33:81:0.370:2	./.	./.	./.	./.	./.	./.	./.
chr1	227921253	rs150323583	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,11:31:29:0.379:2	0/1:62,67:30:129:0.519:2	./.	./.	./.	./.	./.	./.	./.
chr1	227922918	rs2295994	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,2:31:2:1.00:2	./.	./.	0/1:6,4:32:10:0.400:2	0/1:0,2:28:2:1.00:2	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.
chr1	227923081	rs7419238	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2
chr1	227935444	rs2236359	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,129:29:131:0.985:2	0/1:1,76:29:77:0.987:2	./.	0/1:108,82:29:191:0.432:2	0/1:2,190:29:192:0.990:2	./.	0/1:0,180:29:181:1.00:2	0/1:104,90:29:195:0.464:2	0/1:98,95:29:193:0.492:2	0/1:92,67:30:159:0.421:2	./.
chr1	227935750	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,49:30:103:0.476:2	./.	./.	./.	./.
chr1	227954677	rs17851681	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,6:32:11:0.545:2	0/1:47,60:32:107:0.561:2	./.	0/1:62,43:31:105:0.410:2	./.	./.	./.	0/1:36,40:32:76:0.526:2	./.
chr1	227954689	rs78405690	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,7:32:12:0.583:2	0/1:56,62:33:118:0.525:2	./.	./.	./.	./.	./.	./.	./.
chr1	227963491	rs754224	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:23,24:31:47:0.511:2	0/1:14,11:32:25:0.440:2	./.	./.	0/1:23,21:31:44:0.477:2	./.	0/1:25,14:32:39:0.359:2	0/1:43,27:30:70:0.386:2	0/1:33,32:31:65:0.492:2	./.	./.
chr1	228003508	rs41315595	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,11:30:30:0.367:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	228003839	rs79840641	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:41,44:30:85:0.518:2	0/1:25,30:31:55:0.545:2	./.	./.	0/1:31,56:31:87:0.644:2	./.	0/1:26,40:31:66:0.606:2	./.	./.	./.	./.
chr1	228004966	rs61826983	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,54:31:100:0.540:2	./.	./.	./.
chr1	228033197	rs9426581	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,17:30:28:0.607:2	0/1:6,9:32:15:0.600:2	0/1:0,10:30:10:1.00:2	0/1:28,30:31:58:0.517:2	0/1:0,64:31:64:1.00:2	0/1:0,44:31:44:1.00:2	0/1:27,48:31:75:0.640:2	0/1:0,59:31:59:1.00:2	0/1:27,28:31:55:0.509:2	0/1:0,28:32:28:1.00:2	0/1:0,29:32:29:1.00:2
chr1	228033258	rs61741607	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,9:31:20:0.450:2	0/1:52,44:31:96:0.458:2	./.	./.	./.	./.	./.	./.	./.
chr1	228109471	rs8192633	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,10:31:15:0.667:2	0/1:7,4:31:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	228109663	rs76902368	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:30:12:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	228113046	rs8192629	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:30:7:0.857:2	./.	./.	./.	0/1:7,14:31:21:0.667:2	./.	./.	./.	0/1:12,6:28:19:0.333:2
chr1	228113163	rs3795768	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,6:26:6:1.00:2	./.	./.	0/1:4,5:28:9:0.556:2	./.	./.	./.
chr1	228194892	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:30:96:0.042:2	./.	./.	./.	./.
chr1	228290892	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:30:114:0.035:2	./.	./.	./.	./.	./.
chr1	228335125	rs1803695	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,39:33:71:0.549:2
chr1	228335959	rs11580599	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,12:29:24:0.500:2
chr1	228346197	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:30:105:0.038:2
chr1	228346874	rs1052534	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,89:30:89:1.00:2	./.	./.	./.	./.	./.
chr1	228347352	rs6668719	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:33:51:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,5:32:5:1.00:2	0/1:1,79:33:80:0.988:2	0/1:0,53:32:53:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,62:33:62:1.00:2	0/1:0,65:33:65:1.00:2	0/1:0,65:34:65:1.00:2	0/1:0,79:33:79:1.00:2	0/1:32,30:33:62:0.484:2
chr1	228352160	rs4348717	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,108:29:108:1.00:2	0/1:0,81:29:81:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,132:30:132:1.00:2	0/1:1,158:30:159:0.994:2	0/1:0,180:30:180:1.00:2	0/1:0,170:29:170:1.00:2	0/1:0,179:29:179:1.00:2	0/1:1,161:30:162:0.994:2	0/1:0,114:30:114:1.00:2	0/1:1,144:29:145:0.993:2
chr1	228362682	rs2298014	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	./.	./.
chr1	228391808	rs11800309	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,27:31:47:0.574:2	0/1:26,14:32:40:0.350:2	./.	0/1:1,39:32:40:0.975:2	0/1:30,25:31:55:0.455:2	./.	./.	./.	./.	./.	0/1:46,26:31:72:0.361:2
chr1	228399766	rs55971985	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,9:28:9:1.00:2	0/1:0,2:27:2:1.00:2	0/1:0,2:28:2:1.00:2	0/1:0,7:29:7:1.00:2	0/1:4,4:28:8:0.500:2	0/1:0,3:30:3:1.00:2	./.	0/1:0,6:30:6:1.00:2	./.	0/1:0,9:26:9:1.00:2	0/1:2,4:29:6:0.667:2
chr1	228402047	rs1620111	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:31:54:1.00:2	0/1:0,44:32:44:1.00:2	0/1:14,10:32:24:0.417:2	0/1:0,86:32:86:1.00:2	0/1:66,56:30:122:0.459:2	0/1:0,87:31:87:1.00:2	0/1:52,34:32:86:0.395:2	0/1:4,66:30:70:0.943:2	0/1:0,74:33:74:1.00:2	0/1:0,58:31:58:1.00:2	0/1:32,21:32:53:0.396:2
chr1	228402121	rs1771487	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:29:80:1.00:2	0/1:0,76:29:76:1.00:2	0/1:10,14:27:24:0.583:2	0/1:1,140:28:144:0.993:2	0/1:77,61:26:140:0.442:2	0/1:2,131:27:134:0.985:2	0/1:103,55:27:158:0.348:2	0/1:2,144:26:147:0.986:2	0/1:0,150:29:152:1.00:2	0/1:0,129:28:130:1.00:2	0/1:54,42:29:96:0.438:2
chr1	228402508	rs2776853	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:32:5:0.800:2	./.	0/1:12,18:32:30:0.600:2	./.	0/1:13,20:32:33:0.606:2	./.	./.	./.	0/1:24,14:33:38:0.368:2
chr1	228403435	rs201897286	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,26:31:48:0.542:2	0/1:8,14:31:22:0.636:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	228404198	rs61501937	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,13:31:21:0.650:2
chr1	228404230	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,4:31:87:0.046:2	./.	./.	./.	./.	./.	./.	./.
chr1	228404818	rs200638282	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,43:33:91:0.473:2	./.	./.
chr1	228412227	rs1771480	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,14:32:18:0.778:2	./.	0/1:82,51:30:133:0.383:2	./.	0/1:77,47:31:124:0.379:2	./.	./.	./.	0/1:45,49:31:94:0.521:2
chr1	228412228	rs1757153	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,14:31:18:0.778:2	./.	0/1:81,51:29:132:0.386:2	./.	0/1:77,47:30:124:0.379:2	./.	./.	./.	0/1:45,49:30:94:0.521:2
chr1	228412308	rs1757152	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,11:31:15:0.733:2	./.	0/1:72,43:31:115:0.374:2	./.	0/1:51,46:31:97:0.474:2	./.	./.	./.	0/1:57,51:31:108:0.472:2
chr1	228430947	.	C	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,9:30:43:0.209:2	./.	./.	0/1:46,10:30:56:0.179:2	0/1:33,11:28:45:0.250:2	0/1:35,17:30:52:0.327:2	0/1:29,13:28:42:0.310:2	0/1:41,15:28:56:0.268:2	0/1:47,10:27:57:0.175:2	0/1:36,10:29:46:0.217:2	0/1:27,4:25:32:0.129:2
chr1	228431095	rs1771455	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,51:30:120:0.425:2	0/1:32,25:30:57:0.439:2	0/1:11,7:33:18:0.389:2	0/1:0,146:31:146:1.00:2	0/1:1,108:31:109:0.991:2	./.	0/1:67,54:31:121:0.446:2	./.	./.	./.	0/1:0,89:30:89:1.00:2
chr1	228432264	rs41305731	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,26:32:53:0.491:2	./.	./.	./.	./.
chr1	228433217	rs2487384	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,62:30:132:0.470:2	0/1:29,39:29:68:0.574:2	0/1:5,13:31:18:0.722:2	0/1:3,154:29:157:0.981:2	0/1:2,169:30:171:0.988:2	./.	0/1:88,75:30:163:0.460:2	./.	./.	./.	0/1:1,110:29:111:0.991:2
chr1	228434292	.	C	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:67,4:30:71:0.056:2	./.	./.	0/1:95,5:30:100:0.050:2	0/1:104,8:28:112:0.071:2	0/1:95,8:32:103:0.078:2	./.	0/1:100,10:28:110:0.091:2	0/1:102,5:33:107:0.047:2	0/1:96,5:28:101:0.050:2	0/1:88,5:32:93:0.054:2
chr1	228434395	rs7517088	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,41:29:97:0.423:2	0/1:23,29:29:52:0.558:2	0/1:13,4:29:17:0.235:2	0/1:1,81:28:82:0.988:2	0/1:1,82:28:83:0.988:2	./.	0/1:68,31:29:99:0.313:2	./.	./.	./.	0/1:0,60:28:60:1.00:2
chr1	228434467	rs7517108	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,23:29:63:0.365:2	0/1:19,15:28:34:0.441:2	0/1:13,5:30:18:0.278:2	0/1:1,56:30:57:0.982:2	0/1:0,41:29:41:1.00:2	./.	0/1:41,24:31:65:0.369:2	./.	./.	./.	0/1:0,25:30:25:1.00:2
chr1	228437820	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:182,5:32:187:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr1	228444565	rs7532342	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:29:46:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,8:26:8:1.00:2	0/1:0,52:29:53:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,43:28:43:1.00:2	0/1:0,26:29:26:1.00:2	0/1:0,50:28:50:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,29:29:29:1.00:2	0/1:0,19:30:19:1.00:2
chr1	228451818	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:33:113:0.035:2	./.	./.
chr1	228451826	rs453140	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:68,67:30:136:0.496:2	0/1:36,33:31:69:0.478:2	./.	0/1:2,151:30:155:0.987:2	0/1:77,64:30:141:0.454:2	./.	./.	./.	./.	./.	0/1:27,46:30:73:0.630:2
chr1	228464248	rs1188721	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,16:32:48:0.333:2	0/1:21,7:33:28:0.250:2	0/1:10,4:32:14:0.286:2	0/1:0,26:32:26:1.00:2	0/1:1,24:32:25:0.960:2	./.	./.	./.	./.	./.	0/1:0,21:32:21:1.00:2
chr1	228464276	rs1188722	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,22:33:65:0.338:2	0/1:24,10:31:34:0.294:2	0/1:11,6:31:17:0.353:2	0/1:0,37:32:37:1.00:2	0/1:1,24:33:25:0.960:2	./.	./.	./.	./.	./.	0/1:0,22:33:22:1.00:2
chr1	228468458	rs1188697	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,5:32:11:0.455:2	0/1:4,5:32:9:0.556:2	./.	0/1:0,33:30:33:1.00:2	0/1:5,8:31:13:0.615:2	./.	./.	./.	./.	./.	0/1:5,5:32:10:0.500:2
chr1	228469801	rs150312546	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,47:29:111:0.423:2	./.	./.	./.	./.	./.	./.
chr1	228471379	rs56168609	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,12:33:20:0.600:2	./.	0/1:59,54:32:113:0.478:2	./.	0/1:38,49:32:88:0.563:2	./.	./.	./.	0/1:37,33:31:70:0.471:2
chr1	228475597	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:32:89:0.045:2
chr1	228475848	rs437129	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,26:32:60:0.433:2	0/1:19,19:30:38:0.500:2	./.	0/1:1,83:30:84:0.988:2	0/1:23,22:31:45:0.489:2	./.	./.	./.	./.	./.	0/1:34,52:31:86:0.605:2
chr1	228480282	rs1150908	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:75,49:29:124:0.395:2	0/1:31,39:29:70:0.557:2	0/1:3,13:30:16:0.813:2	0/1:3,146:29:149:0.980:2	0/1:0,118:29:118:1.00:2	./.	0/1:72,71:28:143:0.497:2	0/1:143,6:28:149:0.040:2	./.	./.	0/1:2,140:28:142:0.986:2
chr1	228481148	rs377619088	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,64:32:118:0.542:2	./.	./.	./.	./.	./.	./.	./.
chr1	228482010	rs449133	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,81:30:165:0.494:2	0/1:43,67:31:110:0.609:2	0/1:14,22:31:36:0.611:2	0/1:0,179:30:179:1.00:2	0/1:82,101:30:183:0.552:2	./.	0/1:82,100:30:182:0.549:2	./.	./.	./.	0/1:71,79:31:150:0.527:2
chr1	228482028	rs4653547	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,72:31:181:0.398:2	./.	./.	./.	./.	./.	0/1:87,70:31:157:0.446:2
chr1	228482569	rs56122236	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,97:32:191:0.508:2	0/1:91,86:32:177:0.486:2	0/1:80,73:32:153:0.477:2	./.
chr1	228494696	rs4653939	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,107:31:193:0.554:2	./.	./.	./.	./.	./.	0/1:69,89:31:158:0.563:2
chr1	228494790	rs435776	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:79,74:32:153:0.484:2	0/1:65,71:32:136:0.522:2	0/1:23,22:32:45:0.489:2	0/1:2,179:32:181:0.989:2	0/1:111,84:31:195:0.431:2	./.	0/1:95,93:32:188:0.495:2	./.	./.	./.	0/1:92,72:32:164:0.439:2
chr1	228496014	rs876180	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,87:30:133:0.654:2	./.	./.	./.	./.	./.	0/1:33,34:30:68:0.507:2
chr1	228503677	rs1150912	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:41,42:25:83:0.506:2	0/1:21,17:26:38:0.447:2	./.	0/1:1,121:26:122:0.992:2	0/1:0,104:25:104:1.00:2	./.	0/1:60,38:26:98:0.388:2	./.	./.	./.	0/1:1,48:26:49:0.980:2
chr1	228504472	rs1188732	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,9:29:16:0.563:2	./.	./.	0/1:0,24:29:24:1.00:2	0/1:0,27:30:27:1.00:2	./.	0/1:14,4:30:18:0.222:2	./.	./.	./.	0/1:0,10:28:10:1.00:2
chr1	228504591	rs61825301	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,5:32:11:0.455:2	./.	./.	./.	./.	./.	./.
chr1	228504670	rs11810627	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr1	228505204	rs4653942	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,93:30:180:0.520:2	./.	./.	./.	./.	./.	0/1:31,49:30:80:0.613:2
chr1	228505668	rs1188729	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,40:33:92:0.435:2	0/1:32,38:32:70:0.543:2	0/1:5,7:32:12:0.583:2	0/1:2,111:33:113:0.982:2	0/1:1,169:32:170:0.994:2	./.	0/1:126,66:32:192:0.344:2	./.	./.	./.	0/1:0,111:32:111:1.00:2
chr1	228505699	rs1188728	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,61:29:117:0.530:2	0/1:32,51:29:83:0.614:2	0/1:7,7:30:14:0.500:2	0/1:2,145:29:147:0.986:2	0/1:1,176:30:177:0.994:2	./.	0/1:127,60:30:187:0.321:2	./.	./.	./.	0/1:1,122:29:124:0.992:2
chr1	228505739	rs3795801	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,76:32:159:0.478:2	./.	./.	./.	./.	./.	0/1:57,68:31:125:0.544:2
chr1	228509427	rs373610	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,27:32:75:0.360:2	0/1:30,20:32:50:0.400:2	0/1:6,9:34:15:0.600:2	0/1:0,114:33:114:1.00:2	0/1:2,170:32:172:0.988:2	./.	0/1:101,80:32:181:0.442:2	./.	./.	./.	0/1:0,71:31:72:1.00:2
chr1	228520973	rs369909	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,20:30:42:0.476:2	0/1:12,22:29:34:0.647:2	0/1:9,9:31:18:0.500:2	0/1:2,65:30:67:0.970:2	0/1:43,54:29:97:0.557:2	./.	0/1:21,32:29:53:0.604:2	./.	./.	./.	0/1:18,18:32:36:0.500:2
chr1	228524961	rs3795808	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:48,44:31:92:0.478:2	0/1:39,38:31:77:0.494:2	./.	0/1:2,138:31:140:0.986:2	0/1:62,83:31:145:0.572:2	./.	0/1:84,75:31:160:0.472:2	./.	./.	./.	0/1:46,59:32:105:0.562:2
chr1	228525008	rs3795809	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,78:30:187:0.417:2	./.	./.	./.	./.	./.	./.
chr1	228526011	rs11577699	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,7:32:16:0.438:2
chr1	228526665	rs505629	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,47:28:108:0.435:2	0/1:33,24:28:57:0.421:2	0/1:14,10:28:24:0.417:2	0/1:1,133:28:134:0.993:2	0/1:71,35:27:106:0.330:2	./.	0/1:60,32:28:92:0.348:2	./.	./.	./.	0/1:59,42:28:102:0.416:2
chr1	228527769	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,8:28:113:0.071:2	./.
chr1	228528563	rs1188710	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,13:32:37:0.351:2	0/1:9,7:32:16:0.438:2	0/1:2,4:33:6:0.667:2	0/1:0,36:31:36:1.00:2	0/1:15,10:32:25:0.400:2	./.	0/1:10,16:31:26:0.615:2	./.	./.	./.	0/1:8,11:32:19:0.579:2
chr1	228547901	rs12035900	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:16,27:31:43:0.628:2	0/1:12,19:30:31:0.613:2	0/1:2,3:30:5:0.600:2	./.	./.	0/1:0,76:29:77:1.00:2	0/1:44,42:29:86:0.488:2	0/1:1,82:29:83:0.988:2	0/1:0,53:28:54:1.00:2	0/1:0,53:31:53:1.00:2	./.
chr1	228550333	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:119,4:32:123:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr1	228550417	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:34:54:0.074:2	./.	./.
chr1	228550429	rs11585049	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,22:33:40:0.550:2
chr1	228556487	rs188676098	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,50:31:121:0.413:2	./.	./.	./.	./.
chr1	228559994	rs500049	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,6:30:17:0.353:2	./.	0/1:44,56:30:100:0.560:2	0/1:2,126:29:130:0.984:2	0/1:40,60:31:101:0.600:2	0/1:1,115:30:116:0.991:2	0/1:0,109:31:109:1.00:2	0/1:0,74:30:75:1.00:2	./.
chr1	228560139	rs498382	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,35:30:73:0.479:2	0/1:21,25:31:46:0.543:2	0/1:0,4:29:4:1.00:2	0/1:40,35:31:75:0.467:2	0/1:0,78:29:78:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,59:29:59:1.00:2	0/1:0,83:30:83:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,57:31:57:1.00:2	0/1:15,11:31:26:0.423:2
chr1	228560423	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,46:31:95:0.484:2	./.
chr1	228560687	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,5:21:35:0.143:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	228560700	rs512253	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:30,12:29:42:0.286:2	0/1:21,13:28:34:0.382:2	./.	./.	0/1:0,67:27:67:1.00:2	0/1:0,42:29:42:1.00:2	0/1:47,32:27:79:0.405:2	0/1:0,46:28:47:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,25:28:25:1.00:2	./.
chr1	228582461	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:32:56:0.071:2	./.	./.	./.
chr1	228596809	rs369736985	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:31:104:0.038:2	./.	./.	./.	./.	./.
chr1	228601496	rs201069806	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,12:13:87:0.140:2	./.	./.	./.	./.	./.
chr1	228612838	rs2230656	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:30:48:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,81:29:81:1.00:2	0/1:0,61:28:61:1.00:2	0/1:0,72:29:72:1.00:2	0/1:0,71:30:71:1.00:2	0/1:3,75:29:78:0.962:2	0/1:1,73:30:74:0.986:2	0/1:1,53:30:54:0.981:2	0/1:0,54:29:54:1.00:2
chr1	228612892	rs56336130	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,7:27:14:0.500:2	./.	0/1:11,14:27:25:0.560:2	./.	./.
chr1	228646386	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,5:29:96:0.052:2	./.	./.	./.	./.	./.	0/1:56,6:29:62:0.097:2	./.
chr1	228646557	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,5:19:20:0.250:2
chr1	228646804	rs115825350	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,7:32:15:0.467:2	./.
chr1	228680806	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,4:33:122:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr1	228699477	rs6665115	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,170:30:170:1.00:2	0/1:4,154:29:158:0.975:2	0/1:2,43:30:45:0.956:2	0/1:104,80:30:185:0.435:2	0/1:1,179:30:180:0.994:2	0/1:2,186:30:188:0.989:2	./.	./.	0/1:110,82:30:192:0.427:2	0/1:1,159:30:160:0.994:2	0/1:0,180:29:180:1.00:2
chr1	228871693	rs3738073	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,6:30:6:1.00:2	./.	./.	./.	0/1:0,18:29:18:1.00:2	./.	./.	0/1:6,5:29:11:0.455:2	./.	./.
chr1	229385582	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,14:33:31:0.452:2	./.
chr1	229386237	rs16849638	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,11:32:12:0.917:2	./.	0/1:46,34:32:80:0.425:2	./.	0/1:43,52:31:95:0.547:2	./.	./.	0/1:67,46:32:113:0.407:2	./.
chr1	229461024	rs2282083	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:46,67:32:113:0.593:2	0/1:34,47:31:81:0.580:2	0/1:3,6:31:9:0.667:2	./.	0/1:46,50:31:96:0.521:2	0/1:53,61:30:114:0.535:2	./.	./.	0/1:0,111:32:111:1.00:2	0/1:61,42:32:103:0.408:2	0/1:76,63:32:139:0.453:2
chr1	229599414	rs35944758	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:31:12:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	229600512	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:160,4:31:165:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr1	229613370	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.	./.	./.	./.
chr1	229622162	rs1065675	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:32:12:0.583:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	229623218	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:30:48:0.083:2	./.	./.	./.
chr1	229623338	rs1065674	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:27:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	229635521	rs10916495	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,8:32:19:0.421:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	229637807	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,10:30:28:0.357:2	0/1:11,14:31:25:0.560:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	229653929	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,4:32:97:0.041:2	./.	./.	./.	./.	./.	0/1:134,4:33:138:0.029:2	./.	0/1:162,4:33:166:0.024:2	./.
chr1	229653947	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:177,6:30:183:0.033:2	./.	./.	./.	0/1:113,4:32:117:0.034:2	./.	0/1:94,4:32:98:0.041:2	0/1:149,4:32:153:0.026:2	./.	0/1:170,4:33:174:0.023:2	./.
chr1	229654053	rs115488729	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,83:33:193:0.430:2	0/1:104,77:32:181:0.425:2	./.
chr1	229661724	rs373067837	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:30:85:0.047:2	./.	./.	./.	./.
chr1	229661744	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:33:78:0.051:2	./.	./.	./.	./.
chr1	229661748	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:30:80:0.050:2	./.	./.	./.	./.
chr1	229662979	rs147525990	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:32:133:0.030:2	./.	./.	./.	./.	./.
chr1	229662994	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:32:159:0.025:2	./.	./.	./.	./.	./.
chr1	229663048	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:33:134:0.030:2	./.	./.	./.	./.	./.
chr1	229683264	rs3738187	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:31:11:0.273:2	./.	./.	./.	0/1:30,3:32:33:0.091:2	./.	./.	./.	./.
chr1	229730452	rs2295625	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:31:12:0.417:2	./.	0/1:41,45:31:86:0.523:2	0/1:49,47:31:96:0.490:2	0/1:45,47:32:92:0.511:2	0/1:57,65:31:122:0.533:2	./.	0/1:40,49:32:90:0.551:2	0/1:55,45:30:100:0.450:2
chr1	229738170	rs3753886	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,10:31:17:0.588:2	0/1:86,53:30:139:0.381:2	0/1:80,71:30:151:0.470:2	0/1:82,87:31:169:0.515:2	0/1:64,64:30:128:0.500:2	./.	./.	0/1:64,55:30:119:0.462:2	0/1:76,62:31:138:0.449:2
chr1	229738236	rs4925500	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,15:32:15:1.00:2	0/1:0,78:31:78:1.00:2	0/1:1,57:31:58:0.983:2	0/1:46,36:31:82:0.439:2	0/1:29,26:31:55:0.473:2	0/1:40,37:31:77:0.481:2	0/1:41,42:33:83:0.506:2	0/1:46,24:31:70:0.343:2	0/1:0,92:32:92:1.00:2
chr1	229750036	rs7547607	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,6:32:14:0.429:2	0/1:66,42:31:108:0.389:2	0/1:58,34:31:92:0.370:2	./.	./.	0/1:55,45:31:100:0.450:2	0/1:37,38:32:75:0.507:2	./.	0/1:42,38:31:80:0.475:2
chr1	229770917	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:31:10:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	229772693	rs3811473	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,12:33:15:0.800:2	0/1:44,68:33:112:0.607:2	0/1:31,38:31:69:0.551:2	0/1:65,36:32:102:0.356:2	0/1:34,41:32:75:0.547:2	./.	./.	0/1:41,38:32:79:0.481:2	0/1:77,61:32:138:0.442:2
chr1	229772932	rs3811474	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,39:33:74:0.527:2	./.	./.	./.	./.	./.	./.	./.
chr1	229773441	rs3811475	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,17:31:49:0.347:2	./.	./.	./.	./.	./.	./.	./.
chr1	229790047	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:32:195:0.021:2	./.	./.	./.	./.
chr1	229790048	rs7521953	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,10:32:29:0.345:2	0/1:123,70:33:193:0.363:2	0/1:84,111:32:195:0.569:2	0/1:1,192:32:193:0.995:2	0/1:0,191:32:191:1.00:2	./.	0/1:94,98:33:192:0.510:2	0/1:2,186:32:188:0.989:2	0/1:114,73:31:187:0.390:2
chr1	230371783	rs184677007	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:30:54:0.074:2
chr1	230379092	rs142046356	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,23:30:47:0.489:2	./.	./.	./.
chr1	230384970	rs1923950	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,44:30:101:0.436:2	./.	0/1:66,57:30:123:0.463:2
chr1	230415148	rs2273970	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,44:30:104:0.423:2	./.	./.
chr1	230461079	rs2306813	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:39,29:31:69:0.426:2	0/1:26,4:28:30:0.133:2	./.	0/1:66,36:31:102:0.353:2	./.	./.	0/1:80,62:31:142:0.437:2	./.	0/1:69,47:31:116:0.405:2	./.	0/1:42,35:30:77:0.455:2
chr1	230492931	rs114204934	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,36:32:78:0.462:2	0/1:27,15:31:42:0.357:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	230498061	rs2009265	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,43:31:43:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr1	230498094	rs74143198	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,33:32:33:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr1	230503720	rs74143202	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,41:29:76:0.539:2	./.	./.	./.	./.	./.	./.	./.
chr1	230513323	rs143223857	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,13:33:31:0.419:2	0/1:16,11:31:27:0.407:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	230814668	rs11558606	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:30:15:0.400:2	./.	./.	./.	./.	./.	./.	./.
chr1	230820960	rs372577276	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:31:150:0.027:2	./.	./.	./.	./.	./.
chr1	230825825	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:32:153:0.026:2	./.
chr1	230829139	rs1051038	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:43,50:32:94:0.538:2	0/1:38,20:31:58:0.345:2	./.	./.	0/1:41,42:31:83:0.506:2	0/1:2,102:32:104:0.981:2	./.	./.	./.	./.	./.
chr1	230841687	rs7080	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:31:86:1.00:2	0/1:0,73:31:73:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,129:32:129:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,123:31:123:1.00:2	0/1:0,120:32:120:1.00:2	0/1:1,116:32:117:0.991:2	0/1:0,119:32:119:1.00:2	0/1:0,98:31:98:1.00:2	0/1:0,125:32:125:1.00:2
chr1	230845794	rs699	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,27:27:54:0.500:2	0/1:16,19:29:35:0.543:2	./.	0/1:0,63:27:63:1.00:2	0/1:1,78:27:79:0.987:2	0/1:0,62:28:62:1.00:2	./.	0/1:68,67:28:135:0.496:2	0/1:49,33:28:83:0.402:2	0/1:44,25:27:69:0.362:2	0/1:34,36:28:70:0.514:2
chr1	230845977	rs4762	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:12,18:31:30:0.600:2	0/1:8,15:31:23:0.652:2	./.	0/1:14,15:31:29:0.517:2	./.	0/1:10,16:30:26:0.615:2	./.	./.	./.	./.	./.
chr1	230846391	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,67:32:136:0.493:2	./.	./.	./.	./.	./.	./.	./.
chr1	230895340	rs28359608	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	0/1:9,8:31:17:0.471:2	0/1:20,14:31:34:0.412:2	./.	0/1:30,22:30:52:0.423:2	./.	./.	0/1:29,18:31:47:0.383:2
chr1	230895360	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,4:30:40:0.100:2	./.	./.	./.	./.	./.	./.	./.
chr1	230898494	rs2282319	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:39,28:32:67:0.418:2	0/1:19,18:32:37:0.486:2	./.	0/1:41,33:30:75:0.446:2	./.	0/1:57,38:31:95:0.400:2	./.	0/1:73,56:32:129:0.434:2	0/1:42,30:33:72:0.417:2	./.	./.
chr1	230903350	rs3828126	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:18,8:29:26:0.308:2	0/1:8,7:30:15:0.467:2	./.	0/1:15,18:30:33:0.545:2	./.	0/1:15,12:30:27:0.444:2	./.	0/1:20,3:31:23:0.130:2	./.	./.	./.
chr1	230910339	rs7517389	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,69:31:165:0.418:2
chr1	230914729	rs1933631	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,5:32:8:0.625:2	0/1:48,27:32:75:0.360:2	0/1:43,44:32:87:0.506:2	0/1:43,56:32:99:0.566:2	0/1:48,38:32:86:0.442:2	0/1:47,58:33:105:0.552:2	./.	./.	0/1:31,17:33:48:0.354:2
chr1	230914880	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.
chr1	230916001	rs200488224	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:168,4:35:172:0.023:2	./.	./.	./.	./.	./.	./.
chr1	230916260	rs28359687	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,11:32:28:0.393:2	./.	./.	./.	./.
chr1	230923313	rs12731961	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,56:30:114:0.491:2	./.	./.	./.	./.
chr1	230925954	rs28359706	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,22:33:49:0.449:2	./.	./.	./.	./.	./.	./.	./.
chr1	230933898	rs2297831	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,23:32:70:0.329:2	0/1:24,13:32:37:0.351:2	./.	./.	./.	0/1:26,17:30:43:0.395:2	./.	./.	./.	./.	./.
chr1	230979207	rs34864456	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,45:31:118:0.381:2	./.	./.	./.	./.	./.	./.	./.
chr1	230979247	rs35238992	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,54:32:120:0.450:2	./.	./.	./.	./.	./.	./.	./.
chr1	230979448	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,6:29:136:0.044:2	./.	./.	./.	./.	./.
chr1	231042732	rs3811502	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,104:31:106:0.981:2	./.	0/1:96,72:31:169:0.429:2	0/1:70,39:32:109:0.358:2	0/1:76,69:31:145:0.476:2	0/1:67,95:32:162:0.586:2	0/1:66,65:31:131:0.496:2	./.
chr1	231057247	rs2275333	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,10:30:17:0.588:2	0/1:14,14:31:28:0.500:2	./.	0/1:10,6:32:16:0.375:2	./.	./.	0/1:27,19:32:46:0.413:2
chr1	231067513	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:33:78:0.051:2	./.
chr1	231175678	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	231376806	rs2274067	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,32:34:94:0.340:2	./.	./.
chr1	231401902	rs574553	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:33:32:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,3:33:3:1.00:2	0/1:19,27:30:46:0.587:2	0/1:0,30:31:30:1.00:2	./.	0/1:0,26:31:26:1.00:2	./.	0/1:0,42:32:42:1.00:2	0/1:7,31:32:38:0.816:2	0/1:32,28:33:60:0.467:2
chr1	231406515	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:32:127:0.031:2	./.	./.
chr1	231408091	rs11558492	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,82:32:165:0.497:2	0/1:49,43:32:92:0.467:2	0/1:10,5:32:15:0.333:2	0/1:87,60:32:147:0.408:2	0/1:61,60:32:121:0.496:2	./.	0/1:1,118:32:119:0.992:2	./.	./.	0/1:78,62:32:140:0.443:2	0/1:81,100:32:181:0.552:2
chr1	231411911	rs200992309	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,18:15:96:0.189:2	./.	./.	./.	0/1:68,10:14:78:0.128:2	0/1:108,14:20:122:0.115:2
chr1	231488524	rs2437150	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,18:33:34:0.529:2	0/1:5,9:33:14:0.643:2	0/1:0,3:31:3:1.00:2	0/1:9,5:33:14:0.357:2	0/1:0,21:31:21:1.00:2	0/1:9,8:30:17:0.471:2	0/1:15,5:31:20:0.250:2	0/1:0,25:31:25:1.00:2	0/1:15,23:32:38:0.605:2	0/1:0,23:32:23:1.00:2	./.
chr1	231557164	rs61750991	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,4:30:9:0.444:2	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:30:7:0.571:2	./.	./.
chr1	231664607	rs41303127	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:33,24:32:57:0.421:2	0/1:22,20:32:42:0.476:2	0/1:0,3:33:3:1.00:2	./.	./.	./.	./.	./.	0/1:37,41:34:78:0.526:2	./.	0/1:41,43:33:84:0.512:2
chr1	231830295	rs3738401	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,23:31:42:0.548:2	0/1:15,15:32:30:0.500:2	./.	0/1:0,41:31:41:1.00:2	0/1:25,18:31:43:0.419:2	0/1:31,35:32:66:0.530:2	0/1:2,47:32:49:0.959:2	./.	./.	./.	0/1:15,21:31:36:0.583:2
chr1	231903010	rs3738402	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:31:7:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	231906589	rs2492367	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,42:33:110:0.382:2	./.
chr1	231931048	rs2273890	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	0/1:15,9:30:24:0.375:2	./.	./.	./.
chr1	231954101	rs6675281	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,29:32:70:0.420:2	0/1:24,28:33:52:0.538:2	./.	./.	./.	./.
chr1	231954145	rs12133766	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,21:28:51:0.412:2	0/1:24,31:29:55:0.564:2	./.	0/1:20,20:31:40:0.500:2	./.
chr1	232002330	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:30:56:0.071:2	./.	./.	./.	./.	./.
chr1	232002332	rs3081	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,17:30:37:0.459:2	./.	0/1:19,15:30:34:0.441:2	./.
chr1	232098847	rs12754734	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:86,88:32:174:0.506:2	0/1:64,62:33:126:0.492:2	0/1:19,12:33:31:0.387:2	./.	./.	0/1:5,181:32:186:0.973:2	./.	./.	./.	0/1:99,87:32:186:0.468:2	0/1:96,94:33:190:0.495:2
chr1	232098859	rs4266866	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:87,85:33:173:0.494:2	0/1:61,56:32:117:0.479:2	0/1:20,13:32:33:0.394:2	./.	./.	0/1:2,190:32:192:0.990:2	./.	./.	./.	0/1:106,85:32:191:0.445:2	0/1:97,90:33:187:0.481:2
chr1	232099103	rs142896434	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,7:29:18:0.389:2	./.	./.
chr1	232099726	rs821594	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.	./.	./.	./.	./.
chr1	232099733	rs821595	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,7:31:7:1.00:2	./.	./.	./.	./.	./.
chr1	232144598	rs821616	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,15:32:34:0.441:2	0/1:18,12:32:30:0.400:2	./.	./.	./.	0/1:0,65:31:65:1.00:2	./.	./.	./.	0/1:24,23:32:48:0.489:2	0/1:43,20:31:63:0.317:2
chr1	232144739	rs115112816	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,23:33:66:0.348:2	./.	./.
chr1	232144887	rs821617	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:33:11:0.545:2	./.	./.	./.	./.	0/1:0,7:33:7:1.00:2	./.	./.	./.	./.	0/1:8,4:33:12:0.333:2
chr1	232534957	rs12043251	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,36:33:70:0.514:2	0/1:31,16:31:47:0.340:2	./.	0/1:57,44:33:101:0.436:2	0/1:2,81:31:83:0.976:2	./.	./.	./.	./.	0/1:26,32:32:58:0.552:2	./.
chr1	232564288	rs61729754	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,79:32:186:0.425:2	./.
chr1	232564297	rs3210731	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:110,83:31:193:0.430:2	0/1:56,32:32:88:0.364:2	0/1:11,11:31:22:0.500:2	./.	./.	./.	0/1:110,60:32:170:0.353:2	0/1:106,83:31:189:0.439:2	0/1:123,75:32:198:0.379:2	./.	0/1:123,72:32:195:0.369:2
chr1	232574921	rs2275307	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,33:31:106:0.311:2	./.	0/1:44,38:30:82:0.463:2	0/1:51,34:30:85:0.400:2	0/1:43,19:30:62:0.306:2	./.	0/1:32,17:29:49:0.347:2
chr1	232581436	rs12757779	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:31:5:0.800:2	./.	0/1:21,13:29:34:0.382:2	./.	0/1:21,9:30:30:0.300:2	0/1:22,19:31:41:0.463:2	0/1:25,21:30:47:0.457:2	./.	0/1:24,11:30:35:0.314:2
chr1	232596653	rs1766574	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,7:32:17:0.412:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	232596728	rs74807360	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,43:31:84:0.512:2	0/1:26,32:32:58:0.552:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,34:31:79:0.430:2
chr1	232597987	rs12142629	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,9:32:13:0.692:2	./.	0/1:27,36:31:63:0.571:2	./.	0/1:36,28:31:64:0.438:2	0/1:38,50:30:88:0.568:2	0/1:51,54:32:105:0.514:2	./.	0/1:39,27:32:66:0.409:2
chr1	232650750	rs3795366	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,106:30:106:1.00:2	0/1:0,66:29:66:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,147:29:147:1.00:2	0/1:0,187:29:188:1.00:2	0/1:0,167:28:167:1.00:2	0/1:4,188:29:193:0.979:2	0/1:1,180:29:181:0.994:2	0/1:0,167:30:167:1.00:2	0/1:0,126:29:126:1.00:2	0/1:0,108:29:108:1.00:2
chr1	232650867	rs4649383	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,51:31:98:0.520:2	0/1:23,21:31:44:0.477:2	0/1:0,16:30:16:1.00:2	0/1:83,54:30:137:0.394:2	0/1:2,130:30:132:0.985:2	0/1:61,58:30:119:0.487:2	0/1:3,111:31:114:0.974:2	0/1:0,120:31:120:1.00:2	0/1:67,65:31:132:0.492:2	0/1:0,112:31:112:1.00:2	0/1:0,120:31:120:1.00:2
chr1	232651026	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,6:32:93:0.065:2
chr1	232940953	rs10797593	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,63:32:126:0.500:2	./.	./.
chr1	232941153	rs12409898	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:31:52:1.00:2	0/1:0,30:31:30:1.00:2	0/1:5,7:31:12:0.583:2	0/1:0,94:30:94:1.00:2	0/1:35,42:29:77:0.545:2	0/1:2,79:30:81:0.975:2	./.	0/1:1,95:30:96:0.990:2	0/1:37,26:31:63:0.413:2	0/1:1,57:30:58:0.983:2	0/1:0,79:30:80:1.00:2
chr1	232941162	rs377032191	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,20:32:52:0.385:2	./.	./.
chr1	232941215	rs41271527	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,17:32:29:0.586:2	./.	./.
chr1	232941354	rs12567597	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,5:28:6:0.833:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	232941390	rs2814526	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	0/1:2,3:28:5:0.600:2	./.	./.	./.	./.
chr1	232941677	rs3766497	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,44:33:97:0.454:2	./.	./.
chr1	232942251	rs12048236	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,14:33:35:0.400:2	./.	./.
chr1	232943185	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,37:32:80:0.463:2	./.	./.	./.	./.	./.
chr1	232944569	rs1845789	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,44:31:45:0.978:2	0/1:0,23:32:23:1.00:2	0/1:1,5:31:6:0.833:2	0/1:0,50:32:50:1.00:2	./.	0/1:0,59:31:59:1.00:2	0/1:29,25:32:54:0.463:2	0/1:0,55:31:55:1.00:2	0/1:29,32:33:61:0.525:2	0/1:1,36:31:37:0.973:2	0/1:0,85:32:85:1.00:2
chr1	232944926	rs2795462	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,35:31:35:1.00:2	./.	0/1:20,23:32:43:0.535:2	./.	./.	./.	./.
chr1	232944967	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,4:31:62:0.065:2	./.	./.	./.	./.	./.	./.	./.
chr1	232945039	rs16858236	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,27:32:59:0.458:2	./.	./.
chr1	232945255	rs10489578	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,68:31:113:0.602:2	./.	./.
chr1	233086456	rs13381	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,11:33:33:0.333:2	./.	0/1:43,27:33:70:0.386:2	./.	./.	./.	0/1:15,24:33:39:0.615:2	./.
chr1	233091463	rs12725558	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,8:31:28:0.286:2	0/1:16,13:30:29:0.448:2	./.	./.	./.
chr1	233121791	rs12038915	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,26:31:52:0.500:2	0/1:15,23:31:38:0.605:2	0/1:5,8:31:13:0.615:2	0/1:41,39:31:80:0.488:2	./.	0/1:35,38:31:73:0.521:2	./.	./.	./.	0/1:39,27:32:66:0.409:2	./.
chr1	233121884	rs41304133	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,85:31:191:0.445:2	./.	./.	./.	./.
chr1	233122113	rs189263803	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,15:27:21:0.714:2	./.	./.	./.	./.	./.	./.	./.
chr1	233122127	rs41309639	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,10:31:21:0.476:2	0/1:5,8:31:13:0.615:2	0/1:3,3:31:6:0.500:2	0/1:10,19:31:29:0.655:2	./.	0/1:13,28:31:41:0.683:2	./.	./.	./.	0/1:11,19:32:30:0.633:2	./.
chr1	233134086	rs56231757	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,47:30:81:0.580:2	./.	0/1:4,93:30:97:0.959:2	0/1:27,27:31:54:0.500:2	0/1:22,35:30:57:0.614:2	./.
chr1	233225848	rs12059884	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,138:30:138:1.00:2	./.	./.
chr1	233225885	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:32:94:0.043:2	./.	./.	./.	./.	./.
chr1	233388242	rs6682865	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,41:32:90:0.456:2	0/1:28,22:32:50:0.440:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	233393994	rs147287858	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,64:29:118:0.542:2	0/1:45,37:29:82:0.451:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	233397001	rs45467006	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,6:30:16:0.400:2	0/1:3,4:33:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	233397098	rs45559931	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,9:32:35:0.257:2	0/1:4,14:33:18:0.778:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	233397909	rs78404265	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,43:33:108:0.398:2	0/1:30,31:32:61:0.508:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	233398713	rs1033325	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,72:32:149:0.483:2	0/1:52,39:32:91:0.429:2	./.	./.	./.	0/1:77,48:31:125:0.384:2	0/1:47,22:31:69:0.319:2	./.	0/1:102,63:32:165:0.382:2	0/1:73,45:31:118:0.381:2	./.
chr1	233398749	rs143350155	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,108:32:185:0.584:2	./.	./.	./.	./.	./.
chr1	233498026	rs56052041	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,7:29:23:0.304:2	./.
chr1	233514934	rs3795375	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,10:32:19:0.526:2	0/1:0,12:31:12:1.00:2	./.	0/1:6,10:32:16:0.625:2	0/1:13,12:29:25:0.480:2	./.	./.	./.	./.	./.	./.
chr1	233514975	rs3795374	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,6:32:14:0.429:2	0/1:3,12:31:15:0.800:2	./.	0/1:6,7:31:13:0.538:2	0/1:8,11:30:19:0.579:2	./.	./.	./.	./.	./.	./.
chr1	233515071	rs963982	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,24:29:43:0.558:2	0/1:10,16:31:26:0.615:2	./.	0/1:24,17:29:41:0.415:2	0/1:41,17:27:58:0.293:2	./.	./.	./.	./.	./.	./.
chr1	233515102	rs963981	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,35:27:56:0.625:2	0/1:20,19:27:39:0.487:2	./.	0/1:38,24:28:63:0.387:2	0/1:61,42:27:103:0.408:2	./.	./.	./.	./.	./.	./.
chr1	233515413	rs1402815	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,5:31:11:0.455:2	0/1:33,43:31:76:0.566:2	./.	0/1:42,30:30:72:0.417:2	0/1:31,36:31:67:0.537:2	0/1:46,34:31:80:0.425:2	0/1:0,49:32:49:1.00:2	./.	0/1:31,40:32:71:0.563:2
chr1	233750066	rs147368935	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,10:33:22:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	233767008	rs701224	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,72:31:132:0.545:2	./.	0/1:1,136:31:137:0.993:2	0/1:72,110:31:182:0.604:2	0/1:82,70:31:152:0.461:2	./.	./.
chr1	233767023	rs701225	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,65:33:130:0.500:2	./.	0/1:1,142:33:143:0.993:2	0/1:79,87:33:166:0.524:2	0/1:79,73:34:152:0.480:2	./.	0/1:136,4:33:140:0.029:2
chr1	233767059	rs701226	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,41:27:84:0.488:2	./.	0/1:1,86:28:87:0.989:2	0/1:54,50:28:104:0.481:2	0/1:52,47:28:99:0.475:2	./.	0/1:98,4:30:102:0.039:2
chr1	233785716	rs17814096	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,139:32:141:0.986:2	./.	0/1:3,121:32:124:0.976:2	./.	./.	./.	./.
chr1	233785786	rs4649241	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:64,64:28:128:0.500:2	0/1:46,36:29:82:0.439:2	0/1:15,4:28:19:0.211:2	./.	./.	0/1:77,72:29:149:0.483:2	./.	0/1:74,63:28:137:0.460:2	0/1:0,110:30:110:1.00:2	./.	0/1:1,124:28:125:0.992:2
chr1	234041422	rs57010808	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,60:30:128:0.469:2	0/1:51,54:30:105:0.514:2	0/1:2,120:30:122:0.984:2	./.	0/1:52,25:31:77:0.325:2	./.	0/1:32,43:30:75:0.573:2
chr1	234452420	rs373070068	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:133,4:33:137:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr1	234509259	rs10910420	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:32:42:1.00:2	0/1:0,15:32:15:1.00:2	0/1:3,3:30:6:0.500:2	0/1:33,26:32:59:0.441:2	0/1:28,17:32:45:0.378:2	./.	./.	0/1:37,28:32:65:0.431:2	0/1:1,42:34:43:0.977:2	0/1:0,42:32:42:1.00:2	0/1:31,29:33:60:0.483:2
chr1	234529519	rs1802871	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,4:32:18:0.222:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	234529540	rs1134756	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,3:32:15:0.200:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	234529552	rs2175594	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,100:33:103:0.971:2	0/1:0,65:32:65:1.00:2	./.	0/1:61,45:32:107:0.425:2	0/1:68,35:32:103:0.340:2	./.	./.	0/1:84,37:33:121:0.306:2	0/1:75,48:33:123:0.390:2	0/1:33,54:32:87:0.621:2	./.
chr1	234529570	rs2175593	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,84:32:87:0.966:2	0/1:0,51:31:51:1.00:2	./.	0/1:36,35:31:71:0.493:2	0/1:43,25:30:68:0.368:2	./.	./.	0/1:55,23:31:78:0.295:2	0/1:45,38:32:83:0.458:2	0/1:24,45:32:69:0.652:2	./.
chr1	234546245	rs1141264	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,90:32:92:0.978:2	0/1:0,34:32:34:1.00:2	0/1:5,4:32:9:0.444:2	0/1:43,44:32:87:0.506:2	0/1:42,20:32:62:0.323:2	./.	./.	0/1:49,29:32:78:0.372:2	0/1:67,31:33:98:0.316:2	0/1:62,25:32:87:0.287:2	./.
chr1	234563060	rs443685	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,76:32:153:0.497:2	./.	./.	0/1:99,96:32:195:0.492:2	0/1:95,88:33:183:0.481:2
chr1	234564928	rs373349199	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,4:31:27:0.148:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	234564951	rs12135427	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,22:33:44:0.500:2	./.	./.
chr1	234569192	rs3754311	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,15:29:36:0.417:2	./.	./.	0/1:30,17:31:47:0.362:2	./.
chr1	234582583	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:33:184:0.022:2	./.	./.	./.
chr1	234582651	rs4920246	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,8:32:16:0.500:2	0/1:96,93:33:189:0.492:2	0/1:88,71:32:159:0.447:2	0/1:1,180:32:181:0.994:2	./.	0/1:107,79:32:186:0.425:2	./.	./.	0/1:121,69:31:191:0.363:2
chr1	234582720	rs139816698	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:32:16:0.563:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	234584231	rs2102596	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,9:32:25:0.360:2	0/1:15,7:31:22:0.318:2	0/1:0,29:30:29:1.00:2	./.	0/1:21,12:32:33:0.364:2	./.	./.	0/1:17,21:32:38:0.553:2
chr1	234584288	rs114916639	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	234601455	rs202014861	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,5:21:33:0.152:2
chr1	234601456	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,4:25:33:0.121:2	./.	./.	./.	./.	./.
chr1	234603322	rs60079444	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,94:32:177:0.531:2
chr1	234603386	rs270502	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,46:30:108:0.426:2	0/1:34,32:31:66:0.485:2	0/1:13,4:31:17:0.235:2	0/1:0,93:30:93:1.00:2	./.	./.	0/1:36,18:31:54:0.333:2	./.	0/1:62,57:31:119:0.479:2	./.	./.
chr1	234606998	rs3754307	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,105:29:183:0.574:2
chr1	234743237	rs7543281	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:30:8:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	234744250	rs8722	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:32,30:32:62:0.484:2	0/1:14,16:33:30:0.533:2	./.	0/1:0,66:31:66:1.00:2	./.	0/1:39,30:31:69:0.435:2	0/1:25,19:32:44:0.432:2	./.	./.	0/1:26,16:32:42:0.381:2	./.
chr1	235275367	rs145333621	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:30:101:0.040:2	./.	./.	0/1:116,5:30:121:0.041:2
chr1	235275406	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:31:68:0.059:2	./.	./.	./.	./.
chr1	235275408	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,6:31:77:0.078:2	./.	./.	./.	./.	./.	./.	./.
chr1	235275411	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:29:64:0.063:2	./.	./.	./.	./.
chr1	235275417	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:32:107:0.037:2	./.	./.	./.
chr1	235291980	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:29:68:0.059:2	./.
chr1	235324276	rs112038793	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,14:31:35:0.400:2	./.	./.	./.	./.	./.	./.
chr1	235324298	rs2295815	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,20:32:43:0.465:2	./.	0/1:28,15:32:43:0.349:2	./.	0/1:18,18:31:36:0.500:2	./.	0/1:12,8:31:20:0.400:2	./.
chr1	235324545	rs66929873	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,36:30:72:0.500:2	./.	0/1:42,33:29:75:0.440:2	./.	0/1:56,25:30:81:0.309:2	./.	0/1:24,18:30:42:0.429:2	./.
chr1	235345346	rs61730876	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,29:30:51:0.569:2	./.
chr1	235345813	rs59573098	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,59:29:106:0.557:2	./.	./.	./.	./.	./.	./.
chr1	235357427	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,4:31:79:0.051:2	./.	./.	./.	./.	./.	./.	./.
chr1	235383188	rs4659654	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,21:31:21:1.00:2	0/1:78,74:31:152:0.487:2	0/1:49,57:30:106:0.538:2	0/1:134,5:29:139:0.036:2	./.	0/1:4,150:30:154:0.974:2	0/1:85,83:30:168:0.494:2	0/1:80,83:29:164:0.509:2	./.
chr1	235383742	rs148132837	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,39:32:115:0.339:2	./.	./.	./.	./.
chr1	235392546	rs12731746	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:32:9:1.00:2	0/1:47,51:32:98:0.520:2	0/1:48,24:32:72:0.333:2	./.	./.	0/1:0,68:32:68:1.00:2	0/1:70,54:34:124:0.435:2	0/1:70,47:33:117:0.402:2	./.
chr1	235506336	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:31:70:0.057:2
chr1	235506853	rs2803841	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.	0/1:12,6:32:18:0.333:2	./.	./.	0/1:15,15:31:30:0.500:2	0/1:24,13:32:37:0.351:2	./.	./.
chr1	235506918	rs2789367	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:30:11:1.00:2	0/1:64,36:30:100:0.360:2	0/1:30,18:29:48:0.375:2	./.	0/1:66,4:32:70:0.057:2	0/1:0,90:30:90:1.00:2	0/1:51,50:31:102:0.495:2	0/1:43,43:30:86:0.500:2	./.
chr1	235507113	rs16832568	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,44:33:80:0.550:2	./.	./.	./.	0/1:35,33:33:68:0.485:2	./.	0/1:29,24:33:53:0.453:2	./.
chr1	235622029	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,4:31:143:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr1	235652513	rs291396	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:37,40:32:77:0.519:2	0/1:35,16:33:51:0.314:2	./.	0/1:41,36:33:78:0.468:2	./.	./.	./.	0/1:55,57:32:113:0.509:2	0/1:49,38:32:87:0.437:2	0/1:29,49:33:78:0.628:2	0/1:37,33:32:70:0.471:2
chr1	235715523	rs14326	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,12:29:33:0.364:2	0/1:0,38:29:38:1.00:2	0/1:15,8:28:23:0.348:2	./.	0/1:13,11:29:24:0.458:2	./.	0/1:19,13:31:32:0.406:2	0/1:16,12:31:28:0.429:2
chr1	235850267	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:33:102:0.039:2
chr1	235866262	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,4:31:39:0.103:2	./.	./.	./.	./.	./.
chr1	235916436	rs199631995	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,63:32:130:0.485:2	./.	./.	./.
chr1	235922862	rs199857997	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:33:85:0.047:2
chr1	235929493	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,4:30:60:0.067:2	./.	./.	./.	./.	./.	./.	./.
chr1	235940450	rs2273584	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,112:32:115:0.974:2	0/1:1,59:32:60:0.983:2	0/1:0,21:31:21:1.00:2	0/1:60,48:31:108:0.444:2	0/1:59,27:32:86:0.314:2	./.	0/1:48,15:32:63:0.238:2	0/1:59,48:31:107:0.449:2	0/1:85,52:32:137:0.380:2	0/1:0,80:32:80:1.00:2	./.
chr1	235945294	rs6696123	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:33:34:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,7:32:7:1.00:2	0/1:27,26:33:53:0.491:2	0/1:25,11:31:37:0.306:2	./.	0/1:8,19:32:27:0.704:2	0/1:32,13:32:45:0.289:2	0/1:26,34:34:60:0.567:2	0/1:0,37:32:37:1.00:2	./.
chr1	235952098	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:34:162:0.025:2	./.	./.	./.
chr1	235955150	rs11583387	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,6:32:9:0.667:2	0/1:49,27:30:76:0.355:2	0/1:33,28:31:61:0.459:2	./.	./.	./.	0/1:34,43:32:77:0.558:2	0/1:24,27:32:51:0.529:2	./.
chr1	235969187	rs193054100	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,40:32:89:0.449:2	./.	./.	./.	./.	./.	./.	./.
chr1	235971763	rs3768066	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,13:32:24:0.542:2	0/1:83,59:32:142:0.415:2	0/1:93,74:32:168:0.443:2	./.	./.	./.	0/1:76,82:33:158:0.519:2	0/1:58,59:32:117:0.504:2	./.
chr1	235972435	rs3820553	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:32:67:1.00:2	0/1:0,59:33:59:1.00:2	0/1:0,8:34:8:1.00:2	0/1:31,50:33:81:0.617:2	0/1:43,34:32:77:0.442:2	./.	0/1:47,37:33:84:0.440:2	0/1:48,54:33:102:0.529:2	0/1:54,48:33:102:0.471:2	0/1:0,60:33:60:1.00:2	./.
chr1	235972867	rs1063128	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:33:44:1.00:2	0/1:1,29:33:30:0.967:2	0/1:0,6:31:6:1.00:2	0/1:22,36:33:58:0.621:2	0/1:20,21:32:41:0.512:2	./.	0/1:27,11:30:38:0.289:2	0/1:22,33:33:55:0.600:2	0/1:21,32:34:53:0.604:2	0/1:0,39:32:39:1.00:2	./.
chr1	235993709	rs33998267	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,16:33:29:0.552:2
chr1	236141174	rs3213190	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,75:30:142:0.528:2	0/1:58,65:30:123:0.528:2	./.	0/1:99,74:30:173:0.428:2	0/1:162,4:32:166:0.024:2	0/1:163,5:33:168:0.030:2	0/1:64,51:29:115:0.443:2	./.
chr1	236141175	rs200359165	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:34:177:0.023:2	./.	./.	./.	./.
chr1	236144951	rs3738525	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,23:33:45:0.511:2	0/1:22,24:32:46:0.522:2	./.	0/1:24,22:33:46:0.478:2	./.	./.	0/1:18,16:32:34:0.471:2	./.
chr1	236157123	rs17854360	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,21:30:45:0.467:2
chr1	236157124	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:30:47:0.085:2	./.	./.
chr1	236175327	rs3738531	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:14,14:31:28:0.500:2	0/1:18,4:32:22:0.182:2	./.	./.	0/1:34,15:28:51:0.306:2	./.	./.	./.	./.	./.	0/1:18,14:30:32:0.438:2
chr1	236175339	rs2031487	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:15,13:31:28:0.464:2	0/1:16,4:33:20:0.200:2	0/1:2,4:32:6:0.667:2	./.	0/1:29,15:31:44:0.341:2	./.	./.	./.	./.	./.	0/1:0,30:32:30:1.00:2
chr1	236208773	rs10733133	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:48,25:32:73:0.342:2	0/1:24,25:32:49:0.510:2	./.	0/1:45,28:32:73:0.384:2	./.	0/1:44,25:31:69:0.362:2	0/1:43,20:31:63:0.317:2	0/1:40,24:31:64:0.375:2	0/1:45,46:32:91:0.505:2	0/1:22,22:32:44:0.500:2	0/1:70,47:31:117:0.402:2
chr1	236212038	rs6665008	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,19:33:30:0.633:2	./.	0/1:13,12:32:25:0.480:2
chr1	236228158	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,3:32:32:0.094:2
chr1	236228234	rs147109154	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,35:31:64:0.547:2
chr1	236381825	rs1055851	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,24:34:96:0.250:2	0/1:33,31:33:64:0.484:2	0/1:10,6:32:16:0.375:2	0/1:73,42:33:115:0.365:2	0/1:55,23:32:78:0.295:2	./.	0/1:53,14:33:67:0.209:2	0/1:57,37:33:94:0.394:2	0/1:85,46:34:131:0.351:2	./.	./.
chr1	236413230	rs2477599	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,22:32:61:0.361:2	0/1:23,13:31:36:0.361:2	./.	0/1:59,20:32:79:0.253:2	0/1:32,16:31:48:0.333:2	0/1:0,70:31:70:1.00:2	0/1:27,32:31:59:0.542:2	0/1:38,48:32:86:0.558:2	0/1:38,30:32:68:0.441:2	0/1:2,73:32:75:0.973:2	0/1:0,89:32:89:1.00:2
chr1	236415347	rs1749589	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,16:32:30:0.533:2	./.	0/1:59,29:31:88:0.330:2	./.	0/1:57,42:32:99:0.424:2	0/1:94,51:31:145:0.352:2	0/1:102,62:33:164:0.378:2	./.	./.
chr1	236557771	rs966365	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:31:80:1.00:2	0/1:2,47:32:49:0.959:2	0/1:7,6:32:13:0.462:2	0/1:0,135:32:135:1.00:2	0/1:1,89:31:90:0.989:2	0/1:1,99:30:100:0.990:2	0/1:86,50:31:136:0.368:2	0/1:78,47:32:125:0.376:2	0/1:0,139:33:139:1.00:2	0/1:0,101:31:101:1.00:2	0/1:0,90:31:90:1.00:2
chr1	236645609	rs114632254	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,21:28:59:0.356:2	./.	./.	./.
chr1	236645670	rs604070	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,8:31:16:0.500:2	./.	0/1:29,34:32:63:0.540:2	0/1:53,28:30:81:0.346:2	./.	./.	./.	0/1:47,33:32:80:0.413:2	0/1:38,40:32:78:0.513:2
chr1	236689349	rs200944986	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,9:32:22:0.409:2	./.
chr1	236700807	rs1126407	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:30:4:1.00:2	0/1:31,22:29:53:0.415:2	0/1:0,41:30:41:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,28:29:28:1.00:2	0/1:26,27:30:53:0.509:2	./.	0/1:1,49:30:50:0.980:2	0/1:44,25:30:69:0.362:2
chr1	236700823	rs1041934	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:31:6:1.00:2	0/1:32,33:30:65:0.508:2	0/1:0,41:31:41:1.00:2	0/1:0,51:30:51:1.00:2	0/1:1,45:31:46:0.978:2	0/1:31,36:30:67:0.537:2	./.	0/1:0,62:31:62:1.00:2	0/1:47,27:31:74:0.365:2
chr1	236700857	rs1041935	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:31:6:1.00:2	0/1:45,39:31:84:0.464:2	0/1:0,61:31:61:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,59:31:59:1.00:2	0/1:37,54:31:91:0.593:2	./.	0/1:0,75:32:75:1.00:2	0/1:63,36:32:99:0.364:2
chr1	236702209	rs1041936	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:30:6:1.00:2	0/1:63,28:29:91:0.308:2	0/1:0,36:28:36:1.00:2	0/1:2,92:28:95:0.979:2	0/1:0,77:29:78:1.00:2	./.	./.	0/1:1,44:28:45:0.978:2	0/1:59,53:28:112:0.473:2
chr1	236702210	rs1041937	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:31:6:1.00:2	0/1:64,28:31:92:0.304:2	0/1:0,36:29:36:1.00:2	0/1:2,92:30:95:0.979:2	0/1:0,78:30:78:1.00:2	0/1:1,102:26:103:0.990:2	./.	0/1:0,45:30:45:1.00:2	0/1:58,53:30:111:0.477:2
chr1	236702374	rs2472126	G	A,C	.	PASS	AC=7,1;AF=0.292,0.042;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0/1:29:13:1.00:2	0/1:31:163:0.448:2	0/1:31:70:0.986:2	0/1:30:128:1.00:2	0/1:31:84:0.988:2	0/2:33:167:0.464:2	./.	0/1:31:109:1.00:2	0/1:31:168:0.423:2
chr1	236706278	rs2273863	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,43:30:110:0.391:2	./.	./.	./.
chr1	236706283	rs2273864	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:32:125:0.033:2	./.	./.	./.	./.	./.
chr1	236706300	rs2273865	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,44:32:107:0.411:2	./.	./.	./.
chr1	236706862	rs17856495	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:33:11:1.00:2	0/1:55,35:31:91:0.389:2	0/1:0,90:31:90:1.00:2	0/1:0,87:31:87:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,81:31:81:1.00:2	0/1:46,48:32:94:0.511:2	0/1:0,73:32:74:1.00:2	0/1:57,49:32:106:0.462:2
chr1	236711323	rs15701	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,32:32:32:1.00:2	0/1:115,76:33:191:0.398:2	0/1:3,106:32:109:0.972:2	0/1:0,194:32:194:1.00:2	0/1:3,134:33:137:0.978:2	0/1:120,74:32:194:0.381:2	./.	0/1:0,191:33:191:1.00:2	0/1:112,80:33:192:0.417:2
chr1	236716888	rs6664730	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,38:31:76:0.500:2	./.	./.	./.
chr1	236716959	rs2275685	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:32:6:1.00:2	0/1:55,39:33:94:0.415:2	0/1:0,63:32:63:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,71:32:71:1.00:2	0/1:57,35:31:92:0.380:2	./.	0/1:1,58:33:59:0.983:2	0/1:54,53:33:107:0.495:2
chr1	236717926	rs2275687	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,22:32:22:1.00:2	0/1:113,73:33:186:0.392:2	0/1:4,147:32:151:0.974:2	0/1:0,153:32:153:1.00:2	0/1:4,158:32:162:0.975:2	0/1:107,71:32:178:0.399:2	./.	0/1:1,144:33:145:0.993:2	0/1:105,80:32:185:0.432:2
chr1	236718620	rs1126627	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:32:8:1.00:2	0/1:53,35:32:88:0.398:2	0/1:0,51:32:51:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,61:32:61:1.00:2	0/1:42,30:32:72:0.417:2	./.	0/1:0,73:32:73:1.00:2	0/1:44,33:32:77:0.429:2
chr1	236718726	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:32:140:0.029:2
chr1	236719135	rs1885532	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:33:8:1.00:2	0/1:65,66:32:131:0.504:2	0/1:0,73:32:73:1.00:2	0/1:1,81:32:82:0.988:2	0/1:0,77:31:77:1.00:2	0/1:0,96:32:96:1.00:2	0/1:54,58:32:112:0.518:2	0/1:0,74:33:74:1.00:2	0/1:0,124:32:124:1.00:2
chr1	236719193	rs1885533	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:28:10:1.00:2	0/1:56,59:29:115:0.513:2	0/1:1,86:28:87:0.989:2	0/1:3,82:29:85:0.965:2	0/1:5,97:30:102:0.951:2	0/1:69,68:29:138:0.496:2	./.	0/1:0,109:29:109:1.00:2	0/1:58,70:31:130:0.547:2
chr1	236721610	rs2275688	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,19:32:19:1.00:2	0/1:92,53:32:145:0.366:2	0/1:0,130:32:130:1.00:2	0/1:0,108:32:108:1.00:2	0/1:3,102:32:105:0.971:2	0/1:3,156:32:159:0.981:2	./.	0/1:1,129:32:130:0.992:2	0/1:100,65:32:165:0.394:2
chr1	236721660	rs2275689	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,16:33:16:1.00:2	0/1:109,55:33:164:0.335:2	0/1:1,96:32:97:0.990:2	0/1:0,119:32:119:1.00:2	0/1:1,99:33:100:0.990:2	0/1:1,154:33:155:0.994:2	0/1:107,68:34:175:0.389:2	0/1:2,127:33:129:0.984:2	0/1:108,75:33:183:0.410:2
chr1	236721679	rs61730303	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,37:33:92:0.402:2	./.	./.	./.	./.
chr1	236721731	rs819431	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,134:29:134:1.00:2	0/1:0,87:28:87:1.00:2	0/1:0,18:30:18:1.00:2	0/1:1,136:29:137:0.993:2	0/1:0,53:29:53:1.00:2	0/1:0,115:29:115:1.00:2	0/1:0,78:29:78:1.00:2	0/1:0,145:29:145:1.00:2	0/1:0,161:30:161:1.00:2	0/1:0,117:30:117:1.00:2	0/1:0,179:29:179:1.00:2
chr1	236721780	rs16833884	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,36:31:83:0.434:2	./.	./.	./.	0/1:43,54:32:97:0.557:2	./.
chr1	236722357	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,25:34:52:0.481:2	./.	./.
chr1	236723108	rs6661946	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,67:31:148:0.453:2	./.	./.	./.
chr1	236724504	rs1077439	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:31:11:1.00:2	0/1:32,19:31:51:0.373:2	0/1:0,33:31:33:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,18:32:18:1.00:2	0/1:1,33:31:34:0.971:2	./.	0/1:0,28:32:28:1.00:2	0/1:43,39:32:82:0.476:2
chr1	236729956	rs653737	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,36:32:36:1.00:2	0/1:1,22:30:23:0.957:2	./.	0/1:12,15:32:27:0.556:2	./.	./.	./.	./.	0/1:14,14:33:28:0.500:2	./.	./.
chr1	236730157	rs115684254	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,27:32:48:0.563:2
chr1	236740135	rs16833953	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,35:33:64:0.547:2	./.	./.
chr1	236744712	rs4518892	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:31:7:0.714:2	0/1:0,14:30:14:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,6:29:6:1.00:2	./.	./.	0/1:0,10:30:10:1.00:2	0/1:5,5:32:10:0.500:2
chr1	236746443	rs2794768	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,13:31:13:1.00:2	0/1:75,51:32:126:0.405:2	0/1:1,93:31:94:0.989:2	0/1:2,145:31:147:0.986:2	0/1:1,106:31:107:0.991:2	0/1:88,89:31:177:0.503:2	./.	0/1:0,120:32:120:1.00:2	0/1:109,82:32:191:0.429:2
chr1	236748433	rs3738535	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,37:32:79:0.468:2	./.	./.	./.
chr1	236748505	rs1006456	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:32:4:1.00:2	0/1:27,14:34:41:0.341:2	0/1:0,39:33:39:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,33:33:33:1.00:2	0/1:24,24:32:48:0.500:2	./.	0/1:0,32:33:32:1.00:2	0/1:29,16:33:45:0.356:2
chr1	236749128	rs41308194	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,51:32:93:0.548:2	./.	./.	./.	0/1:59,30:32:89:0.337:2	./.
chr1	236749626	rs3738541	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,66:32:174:0.379:2	./.	./.	./.
chr1	236749649	rs2794763	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,29:32:29:1.00:2	./.	0/1:0,148:32:148:1.00:2	0/1:2,175:32:177:0.989:2	0/1:1,177:32:178:0.994:2	./.	./.	0/1:2,168:32:170:0.988:2	0/1:85,103:32:188:0.548:2
chr1	236755837	rs2564739	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:31:10:1.00:2	0/1:104,29:32:133:0.218:2	0/1:0,45:31:45:1.00:2	0/1:0,86:31:86:1.00:2	0/1:0,40:32:40:1.00:2	0/1:104,62:31:166:0.373:2	./.	0/1:2,93:32:95:0.979:2	0/1:102,51:32:153:0.333:2
chr1	236758887	rs2794751	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,19:30:19:1.00:2	0/1:75,70:29:145:0.483:2	0/1:0,94:30:94:1.00:2	0/1:4,116:29:120:0.967:2	0/1:3,142:30:145:0.979:2	0/1:100,61:30:161:0.379:2	./.	0/1:1,112:30:113:0.991:2	0/1:76,62:28:138:0.449:2
chr1	236760181	rs12135515	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,50:32:76:0.658:2	./.	./.	./.	./.	./.	./.	./.
chr1	236767330	rs10802551	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,8:31:10:0.800:2	0/1:42,50:34:92:0.543:2	0/1:0,85:32:85:1.00:2	0/1:0,90:33:90:1.00:2	0/1:0,115:33:115:1.00:2	./.	0/1:63,52:33:115:0.452:2	0/1:1,79:32:80:0.988:2	0/1:55,47:33:102:0.461:2
chr1	236849999	rs121434525	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,45:30:84:0.536:2	./.	./.
chr1	236882303	rs1341864	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:28:57:1.00:2	0/1:0,41:29:41:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,107:29:107:1.00:2	0/1:0,86:29:86:1.00:2	0/1:0,123:29:123:1.00:2	0/1:0,82:29:82:1.00:2	0/1:0,120:30:120:1.00:2	0/1:0,108:30:108:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,112:30:112:1.00:2
chr1	236883421	rs1341863	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,111:32:111:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,146:31:146:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,117:31:117:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,140:32:140:1.00:2	0/1:0,150:33:150:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,146:32:146:1.00:2
chr1	236902618	rs142482143	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,12:32:36:0.333:2	./.	./.
chr1	236923064	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:35:103:0.039:2	./.
chr1	236925844	rs12063382	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,50:32:103:0.485:2	./.	./.	./.	0/1:54,40:33:96:0.426:2	./.	./.
chr1	236990141	rs2229274	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,78:32:171:0.456:2	./.	./.	./.
chr1	237023205	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:32:96:0.042:2	./.
chr1	237048500	rs1805087	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,20:32:51:0.392:2	0/1:5,14:32:19:0.737:2	./.	0/1:13,9:33:22:0.409:2	0/1:26,20:33:46:0.435:2	./.	./.	./.
chr1	237054569	rs2229276	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,30:30:53:0.566:2	0/1:9,13:29:22:0.591:2	./.	./.	./.	0/1:0,54:30:54:1.00:2	./.	0/1:23,30:29:53:0.566:2	./.	0/1:0,48:30:48:1.00:2	0/1:31,20:30:51:0.392:2
chr1	237058744	rs12070777	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,31:30:72:0.431:2	0/1:16,36:32:52:0.692:2	./.	./.	./.	0/1:0,107:31:107:1.00:2	./.	0/1:45,61:30:106:0.575:2	./.	0/1:0,84:31:84:1.00:2	0/1:36,27:29:63:0.429:2
chr1	237058828	rs1131449	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,23:31:49:0.469:2	0/1:11,18:32:29:0.621:2	0/1:2,7:32:9:0.778:2	0/1:37,33:31:70:0.471:2	0/1:58,30:31:88:0.341:2	0/1:0,62:31:62:1.00:2	0/1:44,19:32:63:0.302:2	0/1:0,103:31:103:1.00:2	./.	0/1:0,54:31:54:1.00:2	0/1:40,33:31:73:0.452:2
chr1	237551441	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:32:110:0.036:2	./.	./.	./.	./.	./.
chr1	237617757	rs3765097	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,16:31:36:0.444:2	0/1:21,15:32:36:0.417:2	0/1:0,8:30:8:1.00:2	0/1:1,49:30:50:0.980:2	0/1:24,23:31:47:0.489:2	0/1:31,17:29:48:0.354:2	0/1:1,54:32:55:0.982:2	./.	0/1:25,17:33:42:0.405:2	./.	0/1:41,31:31:72:0.431:2
chr1	237670055	rs180862949	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,20:32:43:0.465:2	./.	./.	./.	./.	./.	./.	./.
chr1	237711797	rs2253273	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,77:29:79:0.975:2	0/1:0,52:29:52:1.00:2	0/1:0,8:26:8:1.00:2	0/1:0,123:30:123:1.00:2	0/1:2,98:29:100:0.980:2	0/1:2,111:30:113:0.982:2	0/1:0,112:30:112:1.00:2	0/1:0,146:30:146:1.00:2	0/1:0,104:30:105:1.00:2	0/1:0,81:30:81:1.00:2	0/1:0,95:30:95:1.00:2
chr1	237755074	rs75901196	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,9:14:64:0.141:2	./.
chr1	237755076	rs56229512	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,72:33:137:0.526:2	./.	./.	./.
chr1	237801770	rs707189	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,171:33:171:1.00:2	0/1:0,118:33:118:1.00:2	0/1:0,28:32:28:1.00:2	0/1:1,183:33:184:0.995:2	0/1:0,144:32:144:1.00:2	0/1:1,183:32:184:0.995:2	0/1:0,166:32:166:1.00:2	0/1:0,165:33:165:1.00:2	0/1:0,183:34:183:1.00:2	0/1:0,169:33:169:1.00:2	0/1:1,155:33:156:0.994:2
chr1	237804209	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:33:87:0.046:2	./.
chr1	237814783	rs684923	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:56,55:32:111:0.495:2	0/1:31,43:32:74:0.581:2	0/1:0,7:32:7:1.00:2	./.	0/1:0,55:32:55:1.00:2	0/1:1,122:31:123:0.992:2	0/1:52,39:32:91:0.429:2	./.	./.	0/1:0,93:33:93:1.00:2	0/1:83,53:33:136:0.390:2
chr1	237841390	rs34967813	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,17:29:45:0.378:2	0/1:45,52:30:97:0.536:2	0/1:24,26:30:50:0.520:2	0/1:3,76:30:79:0.962:2	0/1:2,98:31:100:0.980:2	./.	0/1:48,60:30:108:0.556:2
chr1	237863718	rs2797436	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,136:30:136:1.00:2	0/1:0,80:29:80:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,163:30:163:1.00:2	0/1:0,122:29:122:1.00:2	0/1:0,173:29:173:1.00:2	0/1:0,145:29:145:1.00:2	0/1:0,179:29:179:1.00:2	0/1:0,184:30:184:1.00:2	0/1:0,149:30:149:1.00:2	0/1:0,171:30:171:1.00:2
chr1	237881770	rs2797441	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,164:33:164:1.00:2	0/1:0,104:33:104:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,191:33:191:1.00:2	0/1:0,118:32:118:1.00:2	0/1:0,150:32:150:1.00:2	0/1:0,111:33:111:1.00:2	0/1:0,192:32:192:1.00:2	0/1:0,189:34:189:1.00:2	0/1:0,185:33:185:1.00:2	0/1:0,182:33:182:1.00:2
chr1	237890437	rs2685301	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:32:35:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,39:32:39:1.00:2
chr1	237905571	rs3753630	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,4:32:12:0.333:2	0/1:12,3:32:15:0.200:2	0/1:4,4:32:8:0.500:2	./.	./.	./.
chr1	237947000	rs56226196	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,60:31:132:0.455:2	./.	./.
chr1	237947171	rs41267517	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,31:31:72:0.431:2	./.	./.	./.	./.
chr1	237954725	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:34:116:0.034:2	./.	./.	./.	./.
chr1	237982461	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,5:32:135:0.037:2
chr1	238045834	rs34478438	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:33:49:0.082:2	./.	./.	./.
chr1	238053918	rs35905278	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,67:29:139:0.482:2	./.	./.
chr1	240070944	rs2067481	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,56:31:124:0.452:2	./.	./.	./.	./.	./.	./.	./.
chr1	240072668	rs72760745	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:31:7:0.571:2	./.	./.	0/1:26,15:31:41:0.366:2	0/1:14,12:32:26:0.462:2	./.	./.	./.	./.
chr1	240073226	rs4072234	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,7:31:16:0.438:2	0/1:36,29:31:65:0.446:2	0/1:28,26:30:54:0.481:2	0/1:37,28:30:65:0.431:2	0/1:32,26:31:58:0.448:2	./.	./.	0/1:17,15:32:32:0.469:2	./.
chr1	240073758	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:33:171:0.023:2	./.	./.	./.
chr1	240074978	rs78586097	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,19:34:48:0.396:2	./.	./.	./.	./.	./.	./.	./.
chr1	240074981	rs6682184	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,9:33:11:0.818:2	0/1:29,19:34:48:0.396:2	0/1:21,13:32:34:0.382:2	0/1:33,31:31:64:0.484:2	0/1:17,16:33:33:0.485:2	./.	./.	./.	./.
chr1	240075733	rs77652383	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,36:32:114:0.316:2	./.
chr1	240075761	rs72760746	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,5:31:19:0.263:2	./.	./.	0/1:61,41:32:102:0.402:2	0/1:65,27:33:93:0.293:2	./.	./.	./.	./.
chr1	240075793	rs74882536	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,26:33:76:0.342:2	./.
chr1	240076145	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:35:164:0.025:2	./.	./.
chr1	240076608	rs10495449	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,14:29:32:0.438:2	0/1:19,15:27:34:0.441:2	0/1:14,13:31:27:0.481:2	./.	./.	./.	./.
chr1	240076797	rs112242951	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,52:32:77:0.675:2	./.	./.	./.	./.	./.	./.	./.
chr1	240077023	rs4431831	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:31:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	240077037	rs112416641	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,11:31:27:0.407:2	./.	./.	./.	./.	./.	./.	./.
chr1	240077180	rs183356283	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,72:32:150:0.480:2	./.	./.	./.	./.
chr1	240077246	rs12021598	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,38:30:89:0.427:2	./.	./.	0/1:61,43:30:104:0.413:2
chr1	240077309	rs4659554	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,13:29:27:0.481:2	0/1:17,9:30:26:0.346:2	0/1:20,12:28:32:0.375:2	0/1:10,15:30:25:0.600:2	./.	./.	0/1:14,19:31:33:0.576:2	./.
chr1	240077669	rs6673859	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,17:32:37:0.459:2	0/1:25,16:32:41:0.390:2	0/1:11,30:32:41:0.732:2	./.	./.	./.	./.
chr1	240255941	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,5:28:125:0.040:2
chr1	240256822	rs10926124	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,4:34:5:0.800:2	0/1:1,3:31:4:0.750:2	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.	0/1:0,4:35:4:1.00:2	./.	0/1:0,6:29:6:1.00:2
chr1	240341268	rs3765588	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,28:29:49:0.571:2	./.	./.	./.	./.	./.	./.	./.
chr1	240370629	rs10926166	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,53:29:57:0.930:2	0/1:28,30:28:58:0.517:2	0/1:27,35:29:62:0.565:2	0/1:30,33:30:63:0.524:2	0/1:27,27:30:54:0.500:2	0/1:32,17:29:49:0.347:2	0/1:0,48:29:49:1.00:2
chr1	240370702	rs114291166	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,3:30:13:0.231:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	240370934	rs4997328	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,8:32:28:0.286:2	./.	0/1:10,6:30:16:0.375:2	0/1:29,13:32:42:0.310:2	0/1:28,7:31:35:0.200:2	./.	./.	./.
chr1	240370941	rs4997329	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,7:33:24:0.292:2	./.	0/1:7,5:31:12:0.417:2	0/1:24,8:32:32:0.250:2	0/1:25,5:31:30:0.167:2	./.	./.	./.
chr1	240370946	rs193049501	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,3:34:14:0.214:2	./.	./.	./.	./.	./.
chr1	240370947	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,7:25:15:0.467:2	./.	./.	./.	./.	./.
chr1	240370967	rs200503778	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:33:12:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr1	240370985	rs111896385	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,10:31:17:0.588:2	./.	./.	0/1:6,4:31:10:0.400:2	0/1:4,3:33:7:0.429:2	./.	./.	./.
chr1	240371028	rs150923193	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,11:31:18:0.611:2	./.	./.	0/1:6,10:32:16:0.625:2	./.	./.	./.	./.
chr1	240371075	rs71646825	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:29:11:0.273:2	./.	./.	0/1:6,6:30:12:0.500:2	0/1:10,9:31:19:0.474:2	./.	./.	./.
chr1	240371085	rs71646826	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,5:30:9:0.556:2	./.	./.	./.	./.
chr1	240371106	rs11586155	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,7:29:9:0.778:2	./.	./.	0/1:0,6:30:6:1.00:2	./.	./.	0/1:1,11:28:12:0.917:2
chr1	240371112	rs71646889	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:26:7:0.857:2	./.	./.	./.	./.	./.	./.	./.
chr1	240371151	rs71646892	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:27:10:0.400:2	./.	0/1:5,4:21:9:0.444:2	./.	./.	./.	./.	./.
chr1	240371196	rs201173147	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,2:34:3:0.667:2	./.	./.	./.	./.	./.	./.
chr1	240371211	rs201587786	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,3:27:8:0.375:2	./.	./.	./.
chr1	240371223	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	0/1:1,2:33:3:0.667:2	./.	0/1:3,3:32:6:0.500:2
chr1	240371238	rs201302496	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,3:32:6:0.500:2	./.	./.	./.	./.	./.	./.
chr1	240371426	rs200640213	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr1	240371554	rs12732924	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,4:31:4:1.00:2	0/1:0,2:30:2:1.00:2	./.	0/1:0,2:28:2:1.00:2	0/1:0,4:28:4:1.00:2	0/1:0,2:29:2:1.00:2	0/1:0,4:28:4:1.00:2	./.	0/1:0,2:30:2:1.00:2	./.	0/1:0,4:28:4:1.00:2
chr1	240492734	rs3795677	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,57:33:158:0.361:2	0/1:50,37:32:87:0.425:2	0/1:1,14:32:15:0.933:2	0/1:79,57:32:136:0.419:2	./.	0/1:61,52:31:113:0.460:2	./.	./.	0/1:77,68:32:145:0.469:2	0/1:69,59:32:128:0.461:2	./.
chr1	240497265	rs10157874	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,113:34:113:1.00:2	0/1:2,64:33:66:0.970:2	0/1:2,11:33:13:0.846:2	0/1:0,140:33:140:1.00:2	./.	0/1:58,60:33:118:0.508:2	0/1:46,45:33:91:0.495:2	0/1:58,76:33:134:0.567:2	0/1:65,71:35:136:0.522:2	0/1:94,55:33:149:0.369:2	./.
chr1	240635683	rs183078344	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,31:30:86:0.360:2	./.	./.	./.	./.	./.	./.	./.
chr1	240635749	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,4:33:37:0.108:2	./.	./.
chr1	241031877	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,4:34:133:0.030:2	./.	./.	./.	./.	./.	./.
chr1	241663742	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,4:29:67:0.060:2	./.	./.	0/1:87,6:30:93:0.065:2	./.	./.	./.
chr1	241663769	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,4:31:92:0.043:2	./.	./.	0/1:106,6:32:112:0.054:2	./.	./.	./.
chr1	241667402	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,7:32:117:0.060:2	./.	./.	./.	./.	./.
chr1	241712134	rs11556464	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,10:30:13:0.769:2	0/1:5,6:30:11:0.545:2	0/1:9,6:30:15:0.400:2	./.	./.	./.	0/1:0,21:30:21:1.00:2	./.
chr1	241729889	rs142152979	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:32:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	241755348	rs1053230	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	./.	0/1:37,31:32:68:0.456:2	./.	0/1:40,35:32:75:0.467:2	./.	./.	0/1:58,39:32:97:0.402:2
chr1	241757928	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,6:33:88:0.068:2	./.
chr1	241767627	rs141356521	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,55:28:125:0.440:2	./.	./.	./.	./.	./.
chr1	241767708	rs2273712	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,67:31:167:0.401:2	./.	./.	./.	0/1:57,68:33:125:0.544:2	./.	./.
chr1	241797596	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:32:102:0.039:2	./.	./.	./.	./.	./.
chr1	241797628	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:31:106:0.038:2	./.
chr1	241798443	rs41269377	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,21:29:52:0.404:2	./.	./.	./.
chr1	241798631	rs3737604	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:32:7:0.429:2	0/1:43,39:32:82:0.476:2	0/1:25,16:31:41:0.390:2	./.	0/1:25,21:31:46:0.457:2	0/1:36,21:32:57:0.368:2	0/1:57,36:33:93:0.387:2	0/1:26,16:31:42:0.381:2	0/1:66,57:32:123:0.463:2
chr1	241815908	rs185609089	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:29:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	241907706	rs41310585	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,29:32:59:0.492:2	0/1:20,17:32:37:0.459:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	241907817	rs10802990	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:29:79:1.00:2	0/1:0,49:28:49:1.00:2	0/1:6,8:29:14:0.571:2	0/1:2,115:29:117:0.983:2	0/1:32,43:28:75:0.573:2	0/1:61,70:29:131:0.534:2	0/1:46,54:29:100:0.540:2	0/1:65,56:29:121:0.463:2	./.	0/1:36,42:29:78:0.538:2	0/1:0,99:29:99:1.00:2
chr1	241929542	rs12095445	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,32:32:60:0.533:2	0/1:60,27:31:87:0.310:2	./.	./.	./.	0/1:43,43:32:86:0.500:2	./.
chr1	241951329	rs12074374	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,28:32:28:1.00:2	0/1:22,9:32:31:0.290:2	./.	./.	./.	0/1:20,20:33:40:0.500:2	./.
chr1	241964492	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,3:30:17:0.176:2	./.	./.	./.	./.	./.	./.	./.
chr1	242020734	rs78172944	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:50,6:19:56:0.107:2	./.	./.	0/1:58,10:17:68:0.147:2	0/1:54,11:14:65:0.169:2	./.	./.	0/1:74,13:14:87:0.149:2	0/1:79,14:15:93:0.151:2	0/1:39,9:14:48:0.188:2	0/1:80,12:17:92:0.130:2
chr1	242021959	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:31:155:0.026:2	./.	./.	./.	./.	./.
chr1	242023882	rs149397534	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,37:32:102:0.363:2	0/1:30,36:32:66:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	242030151	rs735943	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,13:28:36:0.361:2	0/1:0,24:29:24:1.00:2	./.	0/1:0,22:28:22:1.00:2	0/1:29,20:28:49:0.408:2	0/1:1,38:29:39:0.974:2	0/1:15,20:29:35:0.571:2	0/1:22,20:28:42:0.476:2
chr1	242035438	rs4149965	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,20:31:79:0.253:2	./.	0/1:53,20:31:73:0.274:2	./.	0/1:87,67:32:154:0.435:2	0/1:52,60:32:112:0.536:2	0/1:106,70:31:176:0.398:2
chr1	242042301	rs1047840	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:40,33:31:74:0.452:2	0/1:26,16:32:42:0.381:2	0/1:0,9:30:9:1.00:2	./.	0/1:31,18:31:49:0.367:2	0/1:34,35:30:69:0.507:2	0/1:37,28:31:65:0.431:2	./.	0/1:52,45:32:97:0.464:2	0/1:54,35:31:89:0.393:2	./.
chr1	242042545	rs1776148	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,20:32:49:0.408:2	0/1:15,17:32:32:0.531:2	./.	0/1:27,35:32:62:0.565:2	0/1:0,65:32:65:1.00:2	0/1:37,27:32:64:0.422:2	0/1:0,73:32:73:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,61:33:61:1.00:2	./.	0/1:42,41:33:83:0.494:2
chr1	242045275	rs1635498	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,52:32:111:0.468:2	0/1:35,28:32:63:0.444:2	0/1:2,23:32:25:0.920:2	0/1:0,95:32:95:1.00:2	0/1:0,83:32:83:1.00:2	0/1:58,87:31:145:0.600:2	0/1:0,104:32:104:1.00:2	0/1:0,140:32:140:1.00:2	0/1:0,155:33:155:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,151:32:151:1.00:2
chr1	242045283	rs4149984	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,54:33:106:0.509:2	0/1:30,32:32:63:0.516:2	./.	./.	./.	0/1:81,52:31:133:0.391:2	./.	./.	./.	./.	./.
chr1	242048674	rs9350	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,14:33:36:0.389:2	./.	./.
chr1	242159614	rs55813237	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,43:31:105:0.410:2	./.
chr1	243289787	rs10881	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:32:179:0.022:2	./.	./.
chr1	243327939	.	A	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,5:31:49:0.102:2	./.	0/1:177,16:30:194:0.083:2	0/1:186,9:31:196:0.046:2	0/1:164,32:30:196:0.163:2	0/1:177,14:31:192:0.073:2	./.	0/1:183,10:30:194:0.052:2	0/1:167,24:29:191:0.126:2
chr1	243328208	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:153,37:33:190:0.195:2	0/1:162,19:31:181:0.105:2	0/1:56,9:31:65:0.138:2	0/1:163,24:32:187:0.128:2	0/1:151,35:32:186:0.188:2	0/1:161,27:32:188:0.144:2	0/1:173,20:33:193:0.104:2	0/1:170,19:32:189:0.101:2	0/1:168,22:33:190:0.116:2	0/1:168,28:32:196:0.143:2	0/1:158,28:32:186:0.151:2
chr1	243328408	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:180,16:31:197:0.082:2	./.	./.	./.	./.	./.	./.
chr1	243328887	rs199575184	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:31:62:0.065:2	0/1:30,4:32:34:0.118:2	0/1:32,3:31:35:0.086:2	./.	./.	0/1:90,15:31:105:0.143:2
chr1	243329049	rs3766664	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,10:29:34:0.294:2	./.	0/1:102,37:32:139:0.266:2	0/1:138,45:31:183:0.246:2	0/1:102,44:31:147:0.301:2	0/1:118,44:31:162:0.272:2	./.	0/1:140,38:32:178:0.213:2	0/1:106,50:32:156:0.321:2
chr1	243329075	rs61833876	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,8:31:29:0.276:2	./.	0/1:95,24:32:119:0.202:2	0/1:131,29:33:160:0.181:2	0/1:89,32:33:121:0.264:2	0/1:108,27:33:135:0.200:2	./.	0/1:125,24:33:149:0.161:2	0/1:135,40:33:175:0.229:2
chr1	243329211	rs200480235	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:99,10:31:109:0.092:2	0/1:126,16:31:142:0.113:2	0/1:115,19:31:134:0.142:2	0/1:153,10:26:163:0.061:2	./.	0/1:141,14:27:155:0.090:2	0/1:148,42:31:190:0.221:2
chr1	243332978	rs182591395	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:145,44:31:189:0.233:2	./.	./.	./.	./.	./.	./.
chr1	243336019	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:156,5:31:161:0.031:2	./.	./.	./.	./.	./.	./.
chr1	243354791	rs144272877	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,13:33:13:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,17:32:17:1.00:2	0/1:1,20:30:21:0.952:2	0/1:0,24:32:24:1.00:2
chr1	243419493	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:31:65:0.062:2	./.	./.
chr1	243493888	rs74701277	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,18:16:127:0.143:2	./.	0/1:96,14:17:110:0.127:2	0/1:107,22:14:130:0.171:2	0/1:115,20:16:135:0.148:2	0/1:122,25:14:147:0.170:2	0/1:87,14:13:101:0.139:2	0/1:101,14:21:115:0.122:2
chr1	243493907	rs2275155	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,11:31:16:0.688:2	./.	./.	0/1:56,58:30:114:0.509:2	0/1:64,52:29:116:0.448:2	0/1:67,47:30:114:0.412:2	./.	0/1:47,60:31:107:0.561:2	0/1:61,49:30:111:0.445:2
chr1	243579112	rs10927011	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,152:32:155:0.981:2	0/1:0,89:32:89:1.00:2	0/1:12,11:32:23:0.478:2	0/1:94,65:32:159:0.409:2	0/1:1,125:31:126:0.992:2	0/1:109,67:32:176:0.381:2	0/1:73,65:32:138:0.471:2	0/1:77,98:32:175:0.560:2	0/1:2,169:33:171:0.988:2	0/1:77,71:32:148:0.480:2	0/1:95,76:32:171:0.444:2
chr1	243859017	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,11:33:22:0.500:2	./.
chr1	244218591	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:157,4:34:161:0.025:2	./.	./.	./.	./.	./.	./.
chr1	244219563	rs2486536	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,14:29:14:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,3:35:3:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,30:31:30:1.00:2
chr1	244582097	rs201194182	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,49:31:108:0.454:2	./.	./.	./.	./.	./.	./.
chr1	244641216	rs11586356	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,70:32:198:0.354:2	./.	./.	./.
chr1	244724092	rs7544794	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,97:33:98:0.990:2	0/1:0,41:32:41:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	244735858	rs10927267	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,114:31:116:0.991:2	0/1:0,72:30:72:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	244754961	rs41269387	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,150:32:153:0.980:2	0/1:3,92:31:95:0.968:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	244816592	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,3:28:12:0.250:2	./.	./.	./.	./.
chr1	244817239	rs41269389	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,29:31:62:0.468:2	0/1:22,20:32:42:0.476:2	./.	./.	./.	./.
chr1	244999067	rs192100928	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr1	245006349	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,4:33:51:0.078:2	0/1:68,5:32:73:0.068:2	./.	./.	./.	./.	./.
chr1	245006464	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,4:36:66:0.061:2	./.	./.	./.	./.	./.	./.	./.
chr1	245027349	rs6675421	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:29:8:0.625:2	0/1:8,4:30:12:0.333:2	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.	./.	0/1:0,5:28:5:1.00:2	./.	./.
chr1	245133489	rs7545078	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,6:29:6:1.00:2	0/1:0,6:31:6:1.00:2	0/1:1,3:34:4:0.750:2	./.	./.	0/1:0,10:32:10:1.00:2	./.	0/1:0,4:32:4:1.00:2	./.	./.	0/1:0,4:29:4:1.00:2
chr1	245133539	rs7542813	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	0/1:0,3:31:3:1.00:2	0/1:0,2:31:2:1.00:2	./.	0/1:0,4:33:4:1.00:2	./.	./.
chr1	245245378	rs10927386	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,7:31:25:0.280:2	0/1:6,7:26:13:0.538:2	./.	./.	./.	./.	./.	./.	0/1:11,14:30:25:0.560:2	0/1:0,14:29:14:1.00:2	./.
chr1	245245402	rs10927387	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,9:34:29:0.310:2	0/1:8,9:32:17:0.529:2	./.	./.	./.	./.	./.	./.	0/1:16,18:32:34:0.529:2	0/1:0,22:31:22:1.00:2	./.
chr1	245704130	rs61754898	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,30:32:81:0.370:2	./.	./.	./.	0/1:50,48:32:98:0.490:2	./.	0/1:44,43:32:87:0.494:2	./.
chr1	245848996	rs61744484	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,11:32:22:0.500:2	./.
chr1	245849000	rs61744485	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,12:31:24:0.500:2	./.	./.	./.	0/1:13,24:32:37:0.649:2	./.	0/1:21,13:30:34:0.382:2
chr1	245849969	rs116468848	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:32:8:0.625:2	./.	./.	0/1:26,25:31:51:0.490:2	./.	0/1:22,13:31:35:0.371:2	./.	./.	./.
chr1	245850095	rs871840	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,59:30:111:0.532:2	./.	./.	./.	0/1:36,33:30:69:0.478:2	./.	0/1:25,22:31:47:0.468:2
chr1	245850205	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:184,4:32:188:0.021:2	./.	./.	./.	./.	./.	./.
chr1	245851304	rs6701084	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:30:27:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,3:28:3:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,21:28:21:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,16:28:16:1.00:2	0/1:0,9:27:9:1.00:2
chr1	245861571	rs3205034	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,13:31:13:1.00:2	0/1:0,6:32:6:1.00:2	./.	0/1:0,17:32:17:1.00:2	0/1:2,5:30:7:0.714:2	./.	0/1:4,4:30:8:0.500:2	0/1:8,14:32:22:0.636:2	0/1:0,10:32:10:1.00:2	0/1:0,3:32:3:1.00:2	./.
chr1	246021851	rs34527613	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,64:32:124:0.516:2	./.	./.	./.	./.	./.	0/1:51,51:30:102:0.500:2
chr1	246021941	rs2362587	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,43:29:90:0.478:2	0/1:24,28:29:52:0.538:2	0/1:0,17:28:17:1.00:2	0/1:0,128:30:128:1.00:2	0/1:0,113:28:113:1.00:2	0/1:75,71:30:146:0.486:2	0/1:70,87:30:157:0.554:2	0/1:81,55:28:136:0.404:2	0/1:87,65:29:152:0.428:2	./.	0/1:0,99:29:99:1.00:2
chr1	246518363	rs150745026	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:34:174:0.023:2
chr1	246670481	rs7520453	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,17:30:43:0.395:2	0/1:20,14:31:34:0.412:2	0/1:6,13:32:19:0.684:2	0/1:46,43:32:89:0.483:2	0/1:0,75:32:75:1.00:2	0/1:0,88:31:88:1.00:2	0/1:0,50:32:50:1.00:2	0/1:1,76:31:77:0.987:2	0/1:0,54:33:54:1.00:2	0/1:2,50:32:52:0.962:2	0/1:0,38:31:38:1.00:2
chr1	246707858	rs3129568	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,46:31:94:0.489:2	0/1:22,29:29:51:0.569:2	0/1:5,11:29:16:0.688:2	0/1:50,53:31:103:0.515:2	./.	0/1:41,46:30:87:0.529:2	./.	0/1:53,49:30:102:0.480:2	0/1:74,47:30:121:0.388:2	./.	./.
chr1	246714587	rs10754526	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,30:33:83:0.361:2	0/1:0,30:32:30:1.00:2	0/1:35,20:32:55:0.364:2	0/1:1,27:33:28:0.964:2	./.	./.	0/1:19,17:33:36:0.472:2	0/1:52,20:33:72:0.278:2
chr1	246720798	rs3124071	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,112:31:112:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,86:31:86:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,93:31:93:1.00:2	0/1:0,74:31:74:1.00:2	0/1:1,115:31:116:0.991:2	0/1:0,123:32:123:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,157:32:157:1.00:2
chr1	246729251	rs143880306	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,38:32:79:0.481:2	./.	0/1:33,41:31:74:0.554:2
chr1	246755124	rs6702823	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:28:66:1.00:2	0/1:0,46:28:46:1.00:2	0/1:0,8:28:8:1.00:2	0/1:1,82:27:83:0.988:2	0/1:1,68:28:69:0.986:2	0/1:51,54:27:105:0.514:2	0/1:0,73:28:73:1.00:2	0/1:0,86:27:86:1.00:2	0/1:0,94:29:94:1.00:2	0/1:0,79:27:79:1.00:2	0/1:0,104:27:104:1.00:2
chr1	246784883	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:31:111:0.036:2
chr1	246922390	rs1127098	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,65:32:171:0.380:2	./.	./.	./.	./.
chr1	246930564	rs7779	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,36:31:78:0.462:2	0/1:34,23:30:57:0.404:2	./.	./.	./.	0/1:72,73:30:145:0.503:2	./.	./.	0/1:81,63:30:144:0.438:2	./.	./.
chr1	246939513	rs3795467	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:31,35:31:66:0.530:2	0/1:16,16:32:32:0.500:2	0/1:1,8:32:9:0.889:2	./.	./.	0/1:34,38:30:72:0.528:2	./.	./.	0/1:34,26:31:61:0.433:2	./.	0/1:54,28:31:82:0.341:2
chr1	246939856	rs3795465	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:58,49:32:107:0.458:2	0/1:24,32:32:56:0.571:2	./.	0/1:63,43:32:106:0.406:2	0/1:74,42:31:117:0.362:2	0/1:58,55:31:113:0.487:2	0/1:90,46:32:136:0.338:2	0/1:71,39:31:110:0.355:2	0/1:81,59:31:140:0.421:2	0/1:58,35:31:93:0.376:2	0/1:73,52:32:125:0.416:2
chr1	246939943	rs6685364	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:52,45:33:97:0.464:2	0/1:31,29:33:60:0.483:2	./.	0/1:83,50:33:133:0.376:2	0/1:50,38:32:88:0.432:2	0/1:89,50:33:139:0.360:2	./.	0/1:81,57:33:138:0.413:2	0/1:81,56:33:137:0.409:2	0/1:61,50:32:111:0.450:2	0/1:63,54:32:117:0.462:2
chr1	246942159	rs7512440	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:39,37:31:77:0.487:2	0/1:20,26:31:46:0.565:2	0/1:11,8:30:19:0.421:2	./.	./.	0/1:61,58:30:119:0.487:2	./.	./.	0/1:56,45:32:101:0.446:2	./.	0/1:76,43:31:119:0.361:2
chr1	246942171	rs4926444	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,51:32:135:0.378:2	./.	./.	./.	./.
chr1	247004226	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:122,4:31:126:0.032:2	./.	./.	./.	./.	./.	./.
chr1	247006051	rs12410563	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:45,36:33:81:0.444:2	0/1:30,10:33:40:0.250:2	./.	./.	./.	./.	0/1:38,43:31:81:0.531:2	./.	./.	./.	./.
chr1	247013009	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2	0/1:165,5:33:170:0.029:2	./.	./.	./.	./.
chr1	247013018	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:124,4:33:128:0.031:2	./.	./.	./.	./.	./.	./.
chr1	247016564	rs372686736	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:32:151:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	247019031	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,3:30:28:0.107:2	./.	./.	./.	./.	./.	./.
chr1	247021085	rs41308162	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,78:32:170:0.459:2	./.	./.	./.	./.	./.
chr1	247024326	rs41304151	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,85:32:195:0.436:2
chr1	247024359	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:182,5:33:187:0.027:2	0/1:168,6:28:174:0.034:2	./.	./.	0/1:189,6:33:195:0.031:2	./.	./.	./.	./.	./.	./.
chr1	247024455	.	T	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,6:30:141:0.043:2	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:31:193:0.026:2	0/1:182,5:31:188:0.027:2
chr1	247025380	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:148,13:33:161:0.081:2	0/1:140,10:33:151:0.067:2	./.	./.	./.	./.	./.	0/1:152,13:33:166:0.079:2	./.	./.	0/1:181,14:34:195:0.072:2
chr1	247027301	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,5:31:159:0.031:2	./.	./.	./.	./.	./.
chr1	247048834	rs2642990	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:99,83:33:183:0.456:2	0/1:98,81:33:180:0.453:2	0/1:19,13:33:32:0.406:2	0/1:124,71:33:195:0.364:2	./.	0/1:127,67:32:194:0.345:2	0/1:2,143:33:145:0.986:2	./.	0/1:0,174:34:174:1.00:2	0/1:121,73:33:194:0.376:2	./.
chr1	247063386	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:27:67:0.060:2	./.	./.	./.	./.
chr1	247065846	rs185927135	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,21:31:34:0.618:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	247068888	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:29:198:0.025:2	./.	./.
chr1	247070883	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:29:93:0.043:2	./.	./.	./.	./.
chr1	247079559	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:158,37:32:195:0.190:2	0/1:116,17:32:133:0.128:2	./.	./.	./.	./.	./.	0/1:156,34:31:190:0.179:2	./.	./.	0/1:165,30:31:195:0.154:2
chr1	247094670	rs138217683	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:28:5:0.600:2	./.	./.
chr1	247150740	rs3749427	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,16:30:38:0.421:2	0/1:12,19:32:31:0.613:2	0/1:2,3:32:5:0.600:2	0/1:18,24:33:42:0.571:2	0/1:1,29:32:30:0.967:2	0/1:1,35:32:36:0.972:2	0/1:0,54:32:54:1.00:2	0/1:0,47:32:47:1.00:2	./.	0/1:0,40:31:40:1.00:2	0/1:34,27:33:61:0.443:2
chr1	247151213	rs185949656	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,13:32:32:0.406:2	./.	./.	./.	./.	./.	./.
chr1	247151487	rs55762230	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,54:31:110:0.491:2	./.	./.
chr1	247151557	rs2642992	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,14:33:27:0.519:2	0/1:1,8:32:9:0.889:2	./.	0/1:14,14:32:28:0.500:2	0/1:0,19:32:19:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,14:32:14:1.00:2	./.	0/1:0,11:31:11:1.00:2	0/1:16,10:33:26:0.385:2
chr1	247162658	rs2642973	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:32:76:1.00:2	0/1:0,64:32:64:1.00:2	0/1:8,5:31:13:0.385:2	0/1:0,133:31:133:1.00:2	0/1:0,153:31:153:1.00:2	0/1:0,133:31:133:1.00:2	0/1:0,150:31:150:1.00:2	0/1:1,161:31:162:0.994:2	0/1:74,63:32:137:0.460:2	0/1:0,150:31:150:1.00:2	0/1:100,77:31:177:0.435:2
chr1	247201591	rs61748726	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,68:33:171:0.398:2	./.	./.
chr1	247241850	rs41305955	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,35:32:68:0.522:2	./.	0/1:28,28:32:56:0.500:2	0/1:26,31:33:57:0.544:2	0/1:22,14:32:36:0.389:2	./.
chr1	247263973	rs35316550	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,33:32:65:0.508:2	./.	./.	./.	./.
chr1	247265061	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:31:114:0.035:2	./.	./.	./.	./.	./.
chr1	247267274	rs4925692	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,8:30:20:0.400:2	./.	0/1:12,18:30:30:0.600:2	./.	0/1:10,21:29:31:0.677:2	0/1:15,10:31:25:0.400:2	0/1:0,14:30:14:1.00:2	0/1:5,9:31:14:0.643:2
chr1	247319928	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:33:64:0.063:2	./.	./.
chr1	247320105	rs33998996	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,68:32:165:0.412:2	./.	./.	./.
chr1	247320258	rs41304032	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,37:32:88:0.420:2	./.	./.	./.	./.	0/1:38,42:32:80:0.525:2	./.
chr1	247320868	rs11806327	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,11:31:23:0.478:2	./.	./.	./.	./.	0/1:21,9:32:30:0.300:2	./.
chr1	247322298	rs6675536	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,54:31:56:0.964:2	0/1:16,6:30:22:0.273:2	./.	./.	0/1:27,32:32:59:0.542:2	./.	0/1:22,27:32:49:0.551:2	./.
chr1	247419509	rs1778540	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,52:33:107:0.486:2	0/1:33,20:33:53:0.377:2	0/1:0,21:31:21:1.00:2	0/1:46,45:32:91:0.495:2	0/1:0,51:31:51:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,57:32:57:1.00:2	0/1:1,86:32:87:0.989:2	0/1:60,62:33:122:0.508:2	0/1:0,86:32:86:1.00:2	0/1:0,128:32:128:1.00:2
chr1	247419664	rs1778541	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,44:33:89:0.494:2	0/1:25,25:32:50:0.500:2	0/1:0,10:32:10:1.00:2	0/1:43,46:33:89:0.517:2	0/1:0,87:32:87:1.00:2	0/1:0,118:31:118:1.00:2	0/1:0,94:32:94:1.00:2	0/1:1,98:32:99:0.990:2	0/1:51,64:33:115:0.557:2	0/1:0,90:33:90:1.00:2	0/1:0,121:33:121:1.00:2
chr1	247420421	rs41308154	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,29:32:57:0.509:2	0/1:14,14:32:28:0.500:2	./.	0/1:22,17:32:39:0.436:2	0/1:14,20:32:34:0.588:2	./.	./.	./.	./.	0/1:19,22:32:41:0.537:2	./.
chr1	247587408	rs7525979	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,83:32:169:0.491:2	./.	./.	./.	0/1:91,73:33:164:0.445:2	./.	./.
chr1	247587477	rs3806268	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:3,82:31:85:0.965:2	0/1:0,56:31:56:1.00:2	./.	./.	0/1:36,41:30:77:0.532:2	./.	./.	0/1:1,94:31:95:0.989:2	0/1:49,48:32:97:0.495:2	0/1:0,79:32:79:1.00:2	0/1:52,48:31:100:0.480:2
chr1	247587531	rs4925543	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:32:55:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,7:32:7:1.00:2	0/1:35,36:33:71:0.507:2	0/1:0,55:32:55:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,65:33:65:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,61:32:61:1.00:2
chr1	247587771	rs41311573	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:33:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	247588053	rs34298354	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,55:30:55:1.00:2	0/1:0,30:31:30:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,22:31:48:0.458:2
chr1	247588858	rs35829419	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,11:32:25:0.440:2	./.	0/1:17,11:31:28:0.393:2	0/1:19,14:32:33:0.424:2	./.	./.	./.	./.
chr1	247593000	rs180177473	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:33:51:0.078:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	247614386	rs12070953	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,8:32:28:0.286:2	0/1:24,27:32:51:0.529:2	0/1:21,14:31:35:0.400:2	./.	./.	./.	0/1:23,20:32:43:0.465:2
chr1	247614407	rs12065526	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,5:29:29:0.172:2	0/1:33,31:30:64:0.484:2	0/1:25,9:30:34:0.265:2	./.	./.	./.	0/1:24,23:31:47:0.489:2
chr1	247614553	rs12086048	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,47:31:80:0.588:2	0/1:36,34:31:70:0.486:2	0/1:29,33:31:63:0.532:2	./.	./.	./.	0/1:51,37:30:88:0.420:2
chr1	247614617	rs4925663	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:30:10:0.400:2	0/1:43,35:31:78:0.449:2	./.	./.	./.	0/1:0,63:30:63:1.00:2	0/1:40,30:32:70:0.429:2	0/1:27,36:32:63:0.571:2	./.
chr1	247614693	rs6695302	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:31:67:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,101:31:101:1.00:2	0/1:0,97:30:97:1.00:2	0/1:0,99:30:99:1.00:2	0/1:0,108:30:108:1.00:2	0/1:0,100:30:100:1.00:2	0/1:0,83:31:84:1.00:2	0/1:1,66:30:67:0.985:2	0/1:0,90:31:90:1.00:2
chr1	247614896	rs11583410	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,39:32:39:1.00:2	0/1:0,25:32:25:1.00:2	./.	0/1:36,21:31:57:0.368:2	0/1:40,16:30:56:0.286:2	0/1:17,25:31:42:0.595:2	0/1:22,20:30:42:0.476:2	./.	0/1:28,24:32:52:0.462:2	0/1:0,40:32:40:1.00:2	./.
chr1	247615183	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,14:30:57:0.246:2
chr1	247615252	rs12028142	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,19:31:50:0.380:2	./.	./.	./.	0/1:35,18:31:53:0.340:2	0/1:41,26:31:67:0.388:2	./.	./.
chr1	247654493	rs79802002	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,90:31:194:0.464:2	./.	./.	./.	./.	./.
chr1	247654498	rs61070846	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,9:30:42:0.214:2	./.	./.	./.	./.	./.	0/1:101,84:32:185:0.454:2	./.	0/1:101,79:32:180:0.439:2
chr1	247654993	rs10925061	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,60:32:122:0.492:2	0/1:74,65:32:139:0.468:2	0/1:78,80:33:158:0.506:2	./.	./.	0/1:49,37:33:86:0.430:2	./.
chr1	247655102	rs143904230	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,57:33:123:0.463:2	./.	./.
chr1	247655275	rs12141850	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,24:31:81:0.296:2	0/1:0,90:32:90:1.00:2	0/1:51,45:32:96:0.469:2	./.	./.	0/1:55,41:31:97:0.427:2	./.
chr1	247694949	rs6702693	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:53,36:33:89:0.404:2	0/1:40,38:32:78:0.487:2	./.	0/1:66,62:32:128:0.484:2	./.	./.	0/1:79,52:32:131:0.397:2	0/1:87,55:32:142:0.387:2	./.	./.	./.
chr1	247694958	rs6702695	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:49,35:32:84:0.417:2	0/1:33,41:32:74:0.554:2	./.	0/1:62,62:31:124:0.500:2	./.	./.	0/1:80,49:31:129:0.380:2	0/1:83,59:31:142:0.415:2	./.	./.	0/1:71,59:32:130:0.454:2
chr1	247695427	rs34220133	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,41:33:70:0.586:2	0/1:40,56:32:96:0.583:2	./.	./.	./.	0/1:53,52:33:105:0.495:2	0/1:35,31:32:66:0.470:2	./.
chr1	247695612	rs6657127	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,104:32:104:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,121:32:121:1.00:2	0/1:0,124:31:124:1.00:2	0/1:0,121:32:121:1.00:2	0/1:0,158:32:159:1.00:2	0/1:0,109:33:109:1.00:2	0/1:0,95:33:95:1.00:2	0/1:0,106:31:106:1.00:2
chr1	247695756	rs6697472	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,97:30:97:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,121:30:121:1.00:2	0/1:0,49:29:49:1.00:2	0/1:0,94:31:94:1.00:2	0/1:1,70:30:71:0.986:2	0/1:0,103:30:104:1.00:2	0/1:1,78:30:79:0.987:2	0/1:0,86:30:86:1.00:2	0/1:0,93:30:93:1.00:2
chr1	247719769	rs56043070	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,7:32:8:0.875:2	./.	./.
chr1	247737493	rs115796168	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,77:33:143:0.538:2	./.	./.	./.	./.	./.	0/1:55,71:32:126:0.563:2	./.
chr1	247751731	rs12737801	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,87:33:198:0.439:2	./.	./.	./.	./.	./.	0/1:98,98:33:196:0.500:2	0/1:107,91:33:198:0.460:2
chr1	247752019	rs1151687	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,85:33:173:0.491:2	0/1:67,67:32:134:0.500:2	0/1:21,10:33:31:0.323:2	0/1:3,180:33:183:0.984:2	./.	0/1:105,88:32:194:0.456:2	./.	0/1:97,92:33:189:0.487:2	0/1:100,93:33:194:0.482:2	0/1:1,178:33:179:0.994:2	0/1:95,91:33:186:0.489:2
chr1	247752109	rs61732336	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,86:32:182:0.473:2	./.	./.	./.	0/1:99,87:32:186:0.468:2
chr1	247752161	rs10925085	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:93,98:31:191:0.513:2	0/1:56,48:30:104:0.462:2	0/1:9,14:31:23:0.609:2	0/1:102,89:30:191:0.466:2	0/1:3,179:29:184:0.984:2	0/1:90,99:30:189:0.524:2	0/1:111,83:30:194:0.428:2	0/1:125,73:29:198:0.369:2	0/1:85,101:30:186:0.543:2	./.	0/1:106,91:30:198:0.462:2
chr1	247752367	rs869111	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:92,78:32:170:0.459:2	0/1:82,71:30:153:0.464:2	0/1:16,13:31:29:0.448:2	0/1:100,79:31:179:0.441:2	./.	0/1:82,96:30:178:0.539:2	0/1:100,77:30:177:0.435:2	0/1:110,84:30:194:0.433:2	./.	0/1:103,71:31:175:0.408:2	0/1:0,172:31:172:1.00:2
chr1	247769062	rs61748963	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,95:33:195:0.487:2	./.	./.	./.	./.	./.	0/1:97,81:33:178:0.455:2	./.
chr1	247769217	rs61750030	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,88:30:186:0.473:2	./.	./.	./.	./.
chr1	247769592	rs1151683	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,16:30:35:0.457:2	./.	./.	0/1:107,89:30:196:0.454:2	./.	./.	0/1:101,90:31:191:0.471:2	0/1:101,89:30:191:0.468:2	./.
chr1	247769752	rs61730407	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:50,28:31:78:0.359:2	0/1:26,22:31:48:0.458:2	./.	0/1:31,31:30:62:0.500:2	./.	0/1:41,39:29:80:0.488:2	0/1:41,30:30:71:0.423:2	0/1:41,40:30:81:0.494:2	./.	0/1:28,33:30:61:0.541:2	./.
chr1	247835674	rs28446289	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,32:33:70:0.457:2	0/1:21,27:32:48:0.563:2	0/1:7,5:33:12:0.417:2	0/1:0,89:32:89:1.00:2	0/1:5,74:32:79:0.937:2	./.	0/1:59,50:33:109:0.459:2	0/1:2,71:33:73:0.973:2	./.	0/1:43,27:33:70:0.386:2	0/1:51,56:33:107:0.523:2
chr1	247835908	rs28556931	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,47:33:104:0.452:2	0/1:38,23:33:61:0.377:2	0/1:8,6:31:14:0.429:2	0/1:0,109:32:109:1.00:2	0/1:2,99:32:102:0.980:2	./.	0/1:78,60:32:138:0.435:2	0/1:1,138:32:139:0.993:2	./.	0/1:49,37:32:86:0.430:2	0/1:65,42:32:107:0.393:2
chr1	247835950	rs1151640	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:49,48:32:97:0.495:2	0/1:22,30:32:52:0.577:2	0/1:2,8:32:10:0.800:2	./.	0/1:94,5:32:100:0.051:2	0/1:61,56:32:117:0.479:2	./.	./.	0/1:0,108:33:108:1.00:2	0/1:34,47:32:81:0.580:2	0/1:52,48:32:100:0.480:2
chr1	247836008	rs28555391	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,46:31:112:0.411:2	0/1:40,26:30:66:0.394:2	0/1:11,4:31:15:0.267:2	0/1:2,129:30:131:0.985:2	0/1:4,113:29:117:0.966:2	./.	0/1:121,73:29:194:0.376:2	0/1:2,175:30:177:0.989:2	./.	0/1:64,53:30:117:0.453:2	0/1:86,77:31:163:0.472:2
chr1	247836207	rs28711149	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,35:32:78:0.449:2	0/1:20,25:31:45:0.556:2	0/1:9,6:30:15:0.400:2	0/1:0,96:30:96:1.00:2	0/1:1,71:30:72:0.986:2	./.	0/1:38,43:31:81:0.531:2	0/1:2,106:31:108:0.981:2	./.	0/1:29,24:30:53:0.453:2	0/1:53,53:31:106:0.500:2
chr1	247875277	rs368539145	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,6:31:42:0.143:2	./.	./.	./.	./.
chr1	247875338	rs376931741	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,5:34:93:0.054:2	./.	./.
chr1	247875415	rs2282316	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.	./.	0/1:43,46:32:89:0.517:2	./.	./.	./.	./.	0/1:33,33:33:66:0.500:2
chr1	247875583	rs6665599	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:26:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	247875608	rs6587382	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:32:8:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:35,14:31:49:0.286:2
chr1	247875689	rs7512807	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,8:32:9:0.889:2	./.	./.	./.	./.	./.	./.	./.	0/1:39,16:33:55:0.291:2
chr1	247886949	rs36075193	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:82,50:31:132:0.379:2	0/1:30,19:31:49:0.388:2	./.	./.	./.	./.	./.	0/1:97,103:32:200:0.515:2	./.	./.	./.
chr1	247887002	rs11204577	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,59:31:112:0.527:2	./.	./.	./.	./.	./.
chr1	247901953	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:32:186:0.022:2	./.	./.	./.	./.	./.
chr1	247902489	rs199713291	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,100:30:191:0.526:2	0/1:103,85:29:188:0.452:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	247921100	rs1552812	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,78:28:78:1.00:2	0/1:0,53:28:53:1.00:2	0/1:7,4:27:11:0.364:2	0/1:1,94:28:95:0.989:2	0/1:0,75:28:75:1.00:2	0/1:63,40:28:103:0.388:2	0/1:2,84:27:86:0.977:2	0/1:0,80:28:80:1.00:2	0/1:0,96:29:96:1.00:2	0/1:0,60:29:60:1.00:2	0/1:53,52:28:105:0.495:2
chr1	247921352	rs1552813	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:31:73:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,70:31:70:1.00:2	0/1:2,41:31:43:0.953:2	0/1:29,43:31:72:0.597:2	0/1:0,52:32:52:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,57:32:57:1.00:2	0/1:1,72:32:73:0.986:2
chr1	247978135	rs12734733	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,28:28:61:0.459:2	./.	./.	./.	./.	./.	0/1:22,13:29:35:0.371:2	./.
chr1	247978190	rs200354047	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,4:31:58:0.069:2	./.	./.	./.	./.	./.	./.
chr1	247978319	rs6695283	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,105:33:105:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,118:32:118:1.00:2	0/1:0,85:33:85:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,100:33:100:1.00:2	0/1:0,136:33:136:1.00:2	0/1:0,119:33:119:1.00:2	0/1:0,106:33:106:1.00:2	0/1:0,126:33:126:1.00:2
chr1	247978518	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:34:48:0.083:2	./.	./.
chr1	247978544	rs113112592	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2
chr1	247978996	rs10888249	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,3:33:6:0.500:2	./.	./.	0/1:0,8:33:8:1.00:2	0/1:1,2:35:3:0.667:2	0/1:0,8:32:8:1.00:2	0/1:0,4:32:4:1.00:2	./.	0/1:0,4:31:4:1.00:2	./.	0/1:0,5:33:5:1.00:2
chr1	248004296	rs6681483	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,75:33:150:0.500:2	0/1:60,37:33:97:0.381:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248004614	rs6667389	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,35:33:72:0.486:2	0/1:32,18:32:50:0.360:2	0/1:0,19:33:19:1.00:2	0/1:2,87:33:89:0.978:2	0/1:0,55:32:55:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,76:32:76:1.00:2	0/1:1,99:32:100:0.990:2	0/1:0,101:33:101:1.00:2	0/1:2,71:33:73:0.973:2	0/1:0,96:32:96:1.00:2
chr1	248004687	rs10888255	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,10:32:26:0.385:2	0/1:4,11:31:15:0.733:2	0/1:0,3:32:3:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,23:31:23:1.00:2
chr1	248004775	rs10888256	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,18:29:46:0.391:2	0/1:16,24:31:40:0.600:2	0/1:0,10:28:10:1.00:2	0/1:1,57:30:58:0.983:2	0/1:1,51:29:52:0.981:2	0/1:0,74:30:75:1.00:2	0/1:1,90:30:91:0.989:2	0/1:0,93:30:93:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,55:30:55:1.00:2
chr1	248004784	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:33:101:0.040:2	./.	./.	./.
chr1	248004848	rs4607924	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,20:32:49:0.408:2	0/1:30,24:32:54:0.444:2	0/1:0,7:31:7:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,97:32:97:1.00:2	0/1:1,77:32:78:0.987:2	0/1:0,100:32:100:1.00:2	0/1:0,70:33:70:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,66:32:66:1.00:2
chr1	248004876	rs140921021	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,15:29:46:0.326:2	./.	./.	./.	./.	./.	./.	./.
chr1	248004877	rs10888257	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,32:32:67:0.485:2	0/1:29,25:32:54:0.463:2	0/1:0,6:31:6:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,98:31:98:1.00:2	0/1:2,88:32:90:0.978:2	0/1:0,106:32:106:1.00:2	0/1:0,78:33:78:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,59:32:59:1.00:2
chr1	248004884	rs1339845	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,31:32:67:0.463:2	0/1:31,25:32:56:0.446:2	0/1:0,6:32:6:1.00:2	0/1:0,53:32:53:1.00:2	0/1:2,107:31:109:0.982:2	0/1:0,106:31:106:1.00:2	0/1:2,89:31:91:0.978:2	0/1:0,108:32:109:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,60:31:61:1.00:2
chr1	248020556	rs11204523	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	0/1:4,3:30:7:0.429:2	./.	0/1:0,5:33:5:1.00:2	./.	0/1:0,2:34:2:1.00:2	./.
chr1	248023966	rs3737277	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,75:31:75:1.00:2	./.	0/1:0,91:31:91:1.00:2	./.	0/1:49,49:31:98:0.500:2	./.	0/1:33,45:33:78:0.577:2	0/1:0,78:32:78:1.00:2
chr1	248028219	rs946696	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:4,10:32:14:0.714:2	0/1:5,4:32:9:0.444:2	0/1:0,6:29:6:1.00:2	./.	0/1:0,15:32:15:1.00:2	./.	0/1:2,12:33:14:0.857:2	0/1:10,6:32:16:0.375:2	0/1:6,4:33:10:0.400:2	0/1:4,9:30:13:0.692:2	./.
chr1	248039451	rs3811444	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,66:31:124:0.532:2	./.	0/1:54,71:31:125:0.568:2	0/1:80,68:32:148:0.459:2	0/1:65,68:33:133:0.511:2	0/1:42,61:32:103:0.592:2	./.
chr1	248039713	rs3811445	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:66,64:31:130:0.492:2	0/1:36,25:29:61:0.410:2	./.	0/1:56,74:31:130:0.569:2	0/1:54,48:30:102:0.471:2	0/1:47,49:30:96:0.510:2	0/1:62,48:31:110:0.436:2	0/1:70,53:31:123:0.431:2	./.	0/1:0,102:31:102:1.00:2	0/1:82,66:31:148:0.446:2
chr1	248058935	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:31:66:0.061:2	./.	./.	./.
chr1	248059423	rs10888267	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:96,84:31:180:0.467:2	0/1:75,51:31:126:0.405:2	./.	0/1:111,86:30:197:0.437:2	0/1:84,101:31:185:0.546:2	0/1:97,92:30:189:0.487:2	0/1:79,103:31:182:0.566:2	0/1:2,178:31:180:0.989:2	0/1:109,68:31:177:0.384:2	./.	0/1:94,96:31:191:0.505:2
chr1	248059456	rs12135078	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:104,76:32:180:0.422:2	0/1:96,83:32:179:0.464:2	0/1:23,23:31:46:0.500:2	./.	0/1:0,172:32:172:1.00:2	0/1:99,92:32:191:0.482:2	0/1:93,93:32:186:0.500:2	0/1:3,183:32:186:0.984:2	0/1:1,173:32:174:0.994:2	./.	./.
chr1	248059476	rs12139390	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,75:29:177:0.426:2	0/1:99,89:29:188:0.473:2	0/1:26,29:29:55:0.527:2	0/1:114,76:30:190:0.400:2	0/1:0,176:30:176:1.00:2	0/1:99,89:30:188:0.473:2	0/1:2,171:30:173:0.988:2	0/1:2,176:30:178:0.989:2	0/1:0,166:31:167:1.00:2	0/1:95,95:30:190:0.500:2	0/1:105,79:30:184:0.429:2
chr1	248059703	rs11204545	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,64:32:145:0.441:2	0/1:60,41:33:101:0.406:2	0/1:11,12:31:23:0.522:2	0/1:87,85:32:172:0.494:2	0/1:2,137:31:139:0.986:2	0/1:88,82:32:170:0.482:2	0/1:98,73:32:171:0.427:2	0/1:0,143:32:143:1.00:2	0/1:2,148:33:150:0.987:2	./.	0/1:103,59:32:162:0.364:2
chr1	248059712	rs11204546	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:75,55:28:130:0.423:2	0/1:55,37:28:92:0.402:2	0/1:9,11:29:20:0.550:2	0/1:84,89:29:174:0.514:2	0/1:2,118:28:120:0.983:2	0/1:85,80:29:165:0.485:2	0/1:99,63:28:162:0.389:2	0/1:0,135:28:135:1.00:2	0/1:1,137:29:138:0.993:2	./.	0/1:96,57:27:153:0.373:2
chr1	248084434	rs11204563	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,128:31:166:0.771:2	0/1:26,123:32:149:0.826:2	0/1:10,36:31:46:0.783:2	0/1:58,111:31:169:0.657:2	0/1:48,124:30:172:0.721:2	0/1:60,117:30:177:0.661:2	0/1:105,83:30:188:0.441:2	0/1:46,140:31:186:0.753:2	0/1:38,152:32:190:0.800:2	0/1:145,28:31:173:0.162:2	0/1:66,107:31:174:0.618:2
chr1	248084440	rs111379878	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:164,7:28:171:0.041:2	0/1:143,12:32:155:0.077:2	./.	./.	0/1:169,23:32:193:0.120:2	0/1:163,16:32:179:0.089:2	0/1:181,12:30:193:0.062:2	0/1:176,15:32:191:0.079:2	./.	./.	./.
chr1	248084464	rs11204564	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,114:29:154:0.745:2	0/1:45,114:29:159:0.717:2	0/1:13,25:29:38:0.658:2	0/1:25,128:30:153:0.837:2	0/1:80,107:29:187:0.572:2	0/1:83,88:29:171:0.515:2	0/1:87,103:29:191:0.542:2	0/1:56,124:29:180:0.689:2	0/1:28,153:29:181:0.845:2	0/1:2,157:29:160:0.987:2	0/1:43,123:29:166:0.741:2
chr1	248084511	rs41315864	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:138,39:31:177:0.220:2	0/1:131,55:33:186:0.296:2	0/1:27,17:33:44:0.386:2	0/1:152,31:33:183:0.169:2	0/1:159,36:33:195:0.185:2	0/1:106,70:33:176:0.398:2	0/1:99,87:33:186:0.468:2	0/1:172,22:31:194:0.113:2	./.	0/1:17,112:33:129:0.868:2	0/1:133,41:33:174:0.236:2
chr1	248084524	rs28575687	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:176,5:32:181:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:30:126:0.032:2	0/1:178,8:31:186:0.043:2
chr1	248084579	rs144850929	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:77,19:30:96:0.198:2	0/1:51,13:31:64:0.203:2	./.	0/1:96,12:30:108:0.111:2	0/1:115,16:30:131:0.122:2	0/1:82,26:29:108:0.241:2	0/1:79,20:30:99:0.202:2	0/1:89,6:31:95:0.063:2	./.	./.	0/1:79,10:30:89:0.112:2
chr1	248084609	rs140703773	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,24:30:24:1.00:2	0/1:0,23:32:24:1.00:2	./.	0/1:1,32:29:33:0.970:2	0/1:0,46:31:47:1.00:2	0/1:0,41:29:41:1.00:2	0/1:0,47:31:48:1.00:2	0/1:0,29:31:29:1.00:2	0/1:1,28:32:29:0.966:2	0/1:0,19:28:19:1.00:2	0/1:0,26:31:26:1.00:2
chr1	248084625	rs6692365	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,10:33:24:0.417:2	./.	./.	0/1:11,8:29:19:0.421:2	0/1:20,13:31:33:0.394:2	0/1:19,7:32:26:0.269:2	0/1:22,7:31:29:0.241:2	0/1:16,11:31:27:0.407:2	0/1:9,7:31:16:0.438:2	0/1:17,6:29:23:0.261:2	0/1:10,7:32:17:0.412:2
chr1	248084627	rs61857490	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,9:28:24:0.375:2	./.	./.	0/1:13,8:24:21:0.381:2	0/1:21,13:29:34:0.382:2	0/1:19,7:31:26:0.269:2	0/1:24,8:30:32:0.250:2	0/1:18,11:29:29:0.379:2	0/1:9,8:30:17:0.471:2	0/1:17,6:30:23:0.261:2	0/1:13,7:32:20:0.350:2
chr1	248084629	rs201244365	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:26,5:31:31:0.161:2	0/1:13,4:32:17:0.235:2	./.	./.	0/1:27,11:32:38:0.289:2	0/1:25,9:30:34:0.265:2	0/1:31,14:27:46:0.311:2	0/1:36,8:32:44:0.182:2	./.	./.	./.
chr1	248084631	rs28689982	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,25:30:34:0.735:2	0/1:6,12:32:18:0.667:2	./.	0/1:11,21:32:32:0.656:2	0/1:15,25:31:41:0.625:2	0/1:10,26:31:36:0.722:2	0/1:17,31:31:48:0.646:2	0/1:16,30:32:46:0.652:2	0/1:8,15:32:23:0.652:2	0/1:14,14:32:28:0.500:2	0/1:15,13:31:28:0.464:2
chr1	248084747	rs4523549	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,12:32:12:1.00:2	0/1:0,5:32:5:1.00:2	./.	0/1:1,15:29:16:0.938:2	0/1:0,11:33:11:1.00:2	0/1:0,8:28:8:1.00:2	0/1:0,8:34:8:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,10:32:10:1.00:2
chr1	248084749	rs12142488	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,12:32:12:1.00:2	0/1:0,5:32:5:1.00:2	./.	0/1:0,14:30:14:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,12:32:12:1.00:2
chr1	248084798	rs74575364	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,39:31:74:0.527:2	0/1:21,29:31:50:0.580:2	0/1:4,3:30:7:0.429:2	0/1:44,30:31:74:0.405:2	0/1:40,57:30:97:0.588:2	0/1:39,56:30:95:0.589:2	0/1:79,55:30:135:0.410:2	0/1:37,47:31:84:0.560:2	./.	0/1:70,54:30:125:0.435:2	0/1:39,35:31:74:0.473:2
chr1	248084825	rs61857492	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,99:29:133:0.744:2	0/1:23,75:30:99:0.765:2	0/1:4,8:30:12:0.667:2	0/1:51,100:30:151:0.662:2	0/1:38,157:29:195:0.805:2	0/1:42,153:29:195:0.785:2	0/1:102,97:30:199:0.487:2	0/1:45,104:30:149:0.698:2	./.	0/1:95,102:30:197:0.518:2	0/1:43,91:30:134:0.679:2
chr1	248084854	rs4584426	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:174,13:30:189:0.070:2	0/1:130,10:30:140:0.071:2	./.	0/1:165,21:31:187:0.113:2	0/1:184,7:32:192:0.037:2	0/1:180,13:31:193:0.067:2	0/1:191,6:32:197:0.030:2	0/1:176,16:31:192:0.083:2	0/1:102,19:33:121:0.157:2	0/1:184,6:29:190:0.032:2	0/1:168,17:28:186:0.092:2
chr1	248084909	rs34508376	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:146,31:32:177:0.175:2	0/1:163,30:31:193:0.155:2	0/1:53,17:33:70:0.243:2	0/1:159,27:33:186:0.145:2	0/1:164,31:31:195:0.159:2	0/1:149,42:32:191:0.220:2	0/1:179,17:33:196:0.087:2	0/1:154,40:32:194:0.206:2	0/1:159,34:33:193:0.176:2	0/1:176,19:31:195:0.097:2	0/1:151,38:33:189:0.201:2
chr1	248084980	rs4362017	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:129,62:32:191:0.325:2	0/1:132,42:32:174:0.241:2	0/1:38,8:32:46:0.174:2	0/1:121,72:32:193:0.373:2	0/1:102,64:32:166:0.386:2	0/1:123,52:32:175:0.297:2	0/1:170,27:33:197:0.137:2	0/1:100,87:32:187:0.465:2	0/1:101,93:32:194:0.479:2	0/1:149,34:33:183:0.186:2	0/1:115,71:33:186:0.382:2
chr1	248084993	rs138101961	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,19:32:197:0.096:2	./.	./.
chr1	248085011	rs4595394	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,57:31:177:0.322:2	./.	./.	0/1:95,76:31:171:0.444:2	./.
chr1	248085077	rs141587311	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:31:153:0.026:2	./.	./.
chr1	248085108	rs4625315	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,106:30:121:0.876:2	0/1:3,67:31:70:0.957:2	0/1:1,18:29:19:0.947:2	0/1:12,120:30:132:0.909:2	0/1:29,80:30:109:0.734:2	0/1:57,102:29:160:0.642:2	0/1:152,32:30:184:0.174:2	0/1:26,146:29:172:0.849:2	0/1:33,118:30:151:0.781:2	0/1:114,44:30:158:0.278:2	0/1:27,139:30:166:0.837:2
chr1	248085124	rs4590708	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,105:31:179:0.587:2	./.	./.	0/1:60,93:32:153:0.608:2	./.
chr1	248097829	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:32:77:0.052:2	./.
chr1	248112285	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,6:31:187:0.032:2	./.	./.	./.	./.
chr1	248112315	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2
chr1	248112335	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:33:196:0.020:2
chr1	248112345	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,6:32:197:0.030:2
chr1	248112420	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:31:195:0.026:2	./.	./.	./.	./.
chr1	248112546	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:178,17:32:195:0.087:2	0/1:186,13:31:199:0.065:2	./.	./.	./.	./.	./.	./.
chr1	248112554	rs202165563	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:172,22:33:194:0.113:2	0/1:183,15:31:198:0.076:2	./.	./.	./.	./.	./.	./.
chr1	248112627	rs4925787	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,78:28:169:0.462:2	0/1:51,52:28:103:0.505:2	0/1:19,18:30:37:0.486:2	0/1:59,132:29:191:0.691:2	0/1:69,121:29:190:0.637:2	0/1:100,93:29:193:0.482:2	0/1:104,90:29:194:0.464:2	0/1:5,182:29:187:0.973:2	0/1:0,160:30:160:1.00:2	0/1:86,92:28:178:0.517:2	0/1:96,84:28:181:0.467:2
chr1	248112745	rs4925788	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:7,36:31:43:0.837:2	0/1:3,22:32:25:0.880:2	0/1:9,5:31:14:0.357:2	0/1:50,19:31:70:0.275:2	0/1:52,18:30:70:0.257:2	0/1:3,35:31:38:0.921:2	0/1:6,32:32:38:0.842:2	0/1:1,41:31:42:0.976:2	0/1:2,31:32:33:0.939:2	0/1:1,32:30:33:0.970:2	0/1:7,45:31:52:0.865:2
chr1	248112754	rs201126494	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,5:32:9:0.556:2	0/1:16,44:31:60:0.733:2	0/1:14,45:31:59:0.763:2	./.	./.	./.	./.	./.	0/1:35,6:31:42:0.146:2
chr1	248112762	rs4925789	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:27:5:0.600:2	./.	./.	./.	./.	0/1:2,3:25:5:0.600:2	0/1:7,4:26:11:0.364:2	0/1:0,4:25:4:1.00:2	0/1:2,7:30:9:0.778:2	0/1:1,4:26:5:0.800:2	0/1:6,5:19:11:0.455:2
chr1	248112763	rs4925790	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:30:5:0.600:2	0/1:7,3:25:10:0.300:2	0/1:1,3:32:4:0.750:2	0/1:2,6:29:8:0.750:2	0/1:2,3:31:5:0.600:2	0/1:5,4:20:10:0.444:2
chr1	248112771	rs4925791	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,14:31:16:0.875:2	0/1:5,10:33:15:0.667:2	./.	0/1:41,27:30:68:0.397:2	0/1:35,12:32:47:0.255:2	0/1:2,19:31:21:0.905:2	0/1:7,9:32:16:0.563:2	0/1:0,13:32:13:1.00:2	0/1:2,11:32:13:0.846:2	0/1:0,21:32:21:1.00:2	0/1:5,23:30:28:0.821:2
chr1	248112794	rs200574966	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,18:31:90:0.200:2	0/1:57,17:30:74:0.230:2	./.	./.	./.	./.	./.	./.
chr1	248112809	rs4925583	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:32:76:1.00:2	0/1:2,47:32:49:0.959:2	0/1:1,8:32:9:0.889:2	0/1:15,87:32:102:0.853:2	0/1:11,76:32:87:0.874:2	0/1:1,92:32:93:0.989:2	0/1:4,53:33:57:0.930:2	0/1:0,82:32:82:1.00:2	0/1:3,91:33:94:0.968:2	0/1:0,81:32:81:1.00:2	0/1:1,89:32:90:0.989:2
chr1	248112815	rs141732349	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,5:33:98:0.051:2	./.	./.	./.	./.	./.	./.
chr1	248112836	rs4925792	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,114:30:114:1.00:2	0/1:2,75:29:77:0.974:2	0/1:0,10:28:10:1.00:2	0/1:6,136:30:143:0.958:2	0/1:2,123:29:125:0.984:2	0/1:0,136:29:136:1.00:2	0/1:4,86:30:90:0.956:2	0/1:0,128:29:128:1.00:2	0/1:1,133:30:134:0.993:2	0/1:1,132:30:133:0.992:2	0/1:0,130:30:130:1.00:2
chr1	248112915	rs10888280	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:102,72:30:177:0.414:2	0/1:61,51:29:113:0.455:2	0/1:20,8:28:28:0.286:2	./.	./.	0/1:98,90:30:188:0.479:2	0/1:114,77:29:191:0.403:2	./.	./.	0/1:98,77:30:175:0.440:2	0/1:99,86:30:186:0.465:2
chr1	248113026	rs10888281	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,54:32:56:0.982:2	0/1:2,32:31:34:0.941:2	0/1:0,5:30:5:1.00:2	0/1:1,67:30:68:0.985:2	0/1:2,55:30:58:0.965:2	./.	0/1:3,38:31:41:0.927:2	0/1:1,72:31:73:0.986:2	0/1:0,63:32:63:1.00:2	0/1:0,63:31:63:1.00:2	0/1:2,67:31:70:0.971:2
chr1	248113040	rs10888282	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,50:33:52:0.962:2	0/1:2,27:31:29:0.931:2	0/1:0,7:33:7:1.00:2	0/1:1,55:32:56:0.982:2	0/1:2,41:32:43:0.953:2	0/1:2,56:31:58:0.966:2	0/1:2,34:32:36:0.944:2	0/1:0,59:32:59:1.00:2	0/1:0,44:33:44:1.00:2	0/1:0,42:32:42:1.00:2	0/1:3,57:32:60:0.950:2
chr1	248128929	rs6664332	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:84,67:31:151:0.444:2	0/1:49,32:32:81:0.395:2	0/1:5,11:31:16:0.688:2	./.	./.	0/1:74,51:31:125:0.408:2	0/1:76,43:31:119:0.361:2	./.	./.	0/1:62,38:31:100:0.380:2	0/1:73,55:31:128:0.430:2
chr1	248129240	rs4478844	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,85:32:186:0.457:2	0/1:81,52:32:133:0.391:2	0/1:11,16:30:27:0.593:2	0/1:6,180:31:186:0.968:2	0/1:115,69:31:185:0.375:2	0/1:82,88:31:170:0.518:2	0/1:102,85:31:187:0.455:2	0/1:1,176:31:177:0.994:2	0/1:0,170:32:170:1.00:2	0/1:103,74:32:177:0.418:2	0/1:87,102:32:189:0.540:2
chr1	248129551	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,4:32:97:0.041:2	./.	./.	./.	./.	./.	./.
chr1	248185343	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:197:0.020:2	./.	./.	./.
chr1	248185883	rs55982561	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,75:31:180:0.417:2	./.	./.	./.	./.	./.	./.	./.
chr1	248186154	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,3:33:39:0.077:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248186167	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,5:32:62:0.081:2	./.
chr1	248202344	rs6658141	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,10:32:15:0.667:2	0/1:58,53:33:112:0.477:2	./.	./.	./.	./.	./.	./.	./.
chr1	248202474	rs144950416	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,8:29:18:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248224099	rs6666048	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,13:31:30:0.433:2	0/1:97,97:33:194:0.500:2	0/1:94,43:32:137:0.314:2	./.	./.	./.	./.	./.	./.
chr1	248224159	rs112851157	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:179,5:32:184:0.027:2	./.	./.	./.	./.	./.	./.
chr1	248224166	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:179,6:31:185:0.032:2	./.	./.	./.	./.	./.	./.
chr1	248224169	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,6:33:196:0.031:2	./.	./.	./.	0/1:187,7:33:194:0.036:2	./.	./.	./.
chr1	248224216	rs6658227	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,8:32:20:0.400:2	0/1:123,73:33:196:0.372:2	0/1:92,83:32:175:0.474:2	./.	./.	./.	./.	./.	./.
chr1	248224294	rs6658256	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,8:32:29:0.276:2	0/1:123,69:32:192:0.359:2	0/1:97,52:32:150:0.349:2	./.	./.	./.	./.	./.	./.
chr1	248224398	rs55937620	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:187,5:29:192:0.026:2	0/1:143,4:32:147:0.027:2	0/1:14,11:30:25:0.440:2	0/1:124,66:33:190:0.347:2	0/1:114,65:32:179:0.363:2	0/1:191,4:32:195:0.021:2	0/1:186,7:30:193:0.036:2	./.	./.	./.	./.
chr1	248224451	.	T	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:175,7:26:183:0.038:2	0/1:139,6:31:145:0.041:2	./.	0/1:168,18:32:187:0.097:2	0/1:145,12:30:157:0.076:2	0/1:188,6:33:194:0.031:2	0/1:189,8:32:198:0.041:2	0/1:184,13:30:197:0.066:2	0/1:174,15:28:189:0.079:2	./.	./.
chr1	248224489	rs56834114	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:172,21:26:194:0.109:2	0/1:140,12:28:152:0.079:2	0/1:7,3:26:10:0.300:2	0/1:133,60:28:193:0.311:2	0/1:112,38:27:150:0.253:2	0/1:171,25:26:196:0.128:2	0/1:169,16:27:187:0.086:2	0/1:178,21:25:199:0.106:2	0/1:177,18:27:196:0.092:2	0/1:181,16:27:197:0.081:2	0/1:176,13:25:189:0.069:2
chr1	248224569	rs75239130	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:154,31:31:186:0.168:2	0/1:147,39:32:186:0.210:2	0/1:15,13:31:28:0.464:2	0/1:132,43:31:175:0.246:2	0/1:129,55:31:184:0.299:2	0/1:161,31:31:192:0.161:2	0/1:163,29:30:192:0.151:2	0/1:164,22:31:186:0.118:2	0/1:164,21:32:185:0.114:2	0/1:154,30:31:184:0.163:2	0/1:153,26:32:180:0.145:2
chr1	248224578	rs60743763	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:167,7:33:175:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr1	248224586	rs60429598	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:167,7:31:174:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr1	248224587	rs61525219	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:165,7:28:174:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr1	248224595	rs76336532	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:158,22:32:180:0.122:2	0/1:149,28:32:177:0.158:2	0/1:18,12:32:30:0.400:2	0/1:143,29:32:172:0.169:2	0/1:141,32:31:173:0.185:2	0/1:164,23:31:187:0.123:2	0/1:168,14:31:182:0.077:2	0/1:169,17:32:186:0.091:2	0/1:164,16:33:180:0.089:2	0/1:153,23:30:176:0.131:2	0/1:158,18:32:176:0.102:2
chr1	248224618	rs113050484	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:175,4:32:179:0.022:2	0/1:153,9:32:162:0.056:2	0/1:18,4:32:22:0.182:2	./.	0/1:150,7:30:157:0.045:2	0/1:173,8:33:181:0.044:2	0/1:182,7:29:189:0.037:2	0/1:177,8:34:185:0.043:2	./.	0/1:171,9:32:180:0.050:2	0/1:172,4:33:176:0.023:2
chr1	248224739	rs113420317	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:136,4:32:141:0.029:2	0/1:21,3:31:24:0.125:2	./.	./.	./.	0/1:186,6:27:192:0.031:2	./.	./.	0/1:175,4:32:179:0.022:2	./.
chr1	248224746	rs6697812	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,10:32:23:0.435:2	./.	./.	./.	./.	./.	0/1:125,63:33:188:0.335:2	./.	./.
chr1	248224754	rs55893924	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,9:32:23:0.391:2	0/1:121,65:33:186:0.349:2	0/1:113,64:32:177:0.362:2	./.	0/1:176,5:32:182:0.028:2	./.	./.	./.	./.
chr1	248264018	rs10749643	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:32:88:1.00:2	0/1:0,53:31:54:1.00:2	0/1:6,5:31:11:0.455:2	0/1:61,84:32:145:0.579:2	0/1:46,34:31:80:0.425:2	0/1:0,99:31:99:1.00:2	0/1:1,82:32:83:0.988:2	0/1:0,108:31:108:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,107:32:107:1.00:2
chr1	248308630	rs369511295	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,4:34:195:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr1	248308910	rs374700206	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:33:177:0.023:2	./.	./.	./.	./.
chr1	248308916	rs115506798	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,5:33:172:0.029:2	./.	./.	./.	./.
chr1	248309020	rs139290187	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:190,5:30:195:0.026:2	./.	./.	./.	0/1:150,22:30:172:0.128:2	0/1:172,16:31:188:0.085:2	0/1:143,15:31:158:0.095:2	./.	./.	./.	0/1:189,6:31:196:0.031:2
chr1	248309038	rs200416647	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:188,4:32:192:0.021:2	./.	./.	./.	0/1:150,4:32:154:0.026:2	./.	0/1:139,4:32:143:0.028:2	./.	./.	./.	./.
chr1	248309148	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,3:31:26:0.115:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248309301	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:31:155:0.026:2	./.	./.	./.	./.
chr1	248309356	rs73141283	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,8:34:18:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248343543	rs9435919	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,166:32:171:0.971:2	0/1:2,118:32:120:0.983:2	0/1:1,18:31:19:0.947:2	0/1:5,170:32:175:0.971:2	0/1:5,172:31:177:0.972:2	0/1:76,93:32:169:0.550:2	0/1:7,176:32:183:0.962:2	0/1:5,157:32:163:0.969:2	0/1:89,96:32:185:0.519:2	0/1:4,167:32:171:0.977:2	0/1:100,91:32:191:0.476:2
chr1	248343762	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:29:193:0.026:2	./.
chr1	248343790	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:30:195:0.026:2	./.
chr1	248343791	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:32:193:0.026:2	./.
chr1	248343827	.	A	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:190,7:32:197:0.036:2	0/1:179,4:32:183:0.022:2	./.	./.	0/1:169,5:33:175:0.029:2	./.	0/1:184,5:32:189:0.026:2	./.	./.	0/1:189,6:33:195:0.031:2	./.
chr1	248343858	rs373123723	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:31:197:0.025:2	./.	./.	./.	./.
chr1	248343945	rs4244171	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,153:33:154:0.994:2	0/1:1,105:32:106:0.991:2	0/1:2,25:32:27:0.926:2	0/1:3,146:32:149:0.980:2	0/1:6,106:32:112:0.946:2	0/1:132,54:32:186:0.290:2	0/1:6,87:32:93:0.935:2	0/1:10,165:32:176:0.943:2	0/1:116,72:33:189:0.383:2	0/1:2,130:33:132:0.985:2	0/1:130,57:33:188:0.305:2
chr1	248343990	rs4916104	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,141:29:141:1.00:2	0/1:0,79:30:79:1.00:2	0/1:1,16:29:17:0.941:2	0/1:0,134:29:134:1.00:2	0/1:1,110:30:111:0.991:2	0/1:151,45:30:196:0.230:2	0/1:6,98:30:104:0.942:2	0/1:5,157:30:162:0.969:2	0/1:110,58:30:168:0.345:2	0/1:3,134:30:137:0.978:2	0/1:119,56:29:175:0.320:2
chr1	248344032	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:33:173:0.023:2	./.
chr1	248366625	rs201750460	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:116,4:33:120:0.033:2	./.	./.	./.	./.	./.	0/1:186,4:32:191:0.021:2	./.	./.	./.
chr1	248366702	rs4916112	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:75,95:32:170:0.559:2	0/1:46,79:31:125:0.632:2	0/1:0,24:31:24:1.00:2	0/1:4,183:31:187:0.979:2	0/1:3,144:31:147:0.980:2	0/1:87,102:31:189:0.540:2	0/1:2,154:31:156:0.987:2	0/1:1,184:31:185:0.995:2	0/1:91,97:32:188:0.516:2	0/1:4,179:31:183:0.978:2	0/1:96,86:31:182:0.473:2
chr1	248366792	rs12562957	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,84:30:182:0.462:2	0/1:96,77:29:173:0.445:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248367105	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,5:31:176:0.028:2	./.
chr1	248402707	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,5:32:167:0.030:2
chr1	248402758	rs6666148	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,171:31:172:0.994:2	0/1:0,89:31:89:1.00:2	0/1:0,16:31:16:1.00:2	0/1:84,66:31:150:0.440:2	0/1:0,105:31:105:1.00:2	0/1:97,60:30:157:0.382:2	0/1:3,111:31:114:0.974:2	0/1:4,125:31:129:0.969:2	./.	0/1:1,132:31:134:0.992:2	0/1:100,94:32:194:0.485:2
chr1	248436313	rs111541774	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:150,41:27:191:0.215:2	0/1:155,39:27:194:0.201:2	0/1:47,14:28:61:0.230:2	0/1:145,55:28:200:0.275:2	0/1:134,61:27:195:0.313:2	0/1:132,64:28:196:0.327:2	0/1:174,24:28:198:0.121:2	0/1:145,50:28:195:0.256:2	0/1:150,44:30:194:0.227:2	0/1:165,29:27:194:0.149:2	0/1:147,44:28:192:0.230:2
chr1	248436359	rs113574656	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:171,5:32:176:0.028:2	./.	./.	./.	./.	./.	./.
chr1	248436425	rs137877266	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,33:33:195:0.169:2	./.	./.	0/1:164,34:33:198:0.172:2	./.
chr1	248436443	rs138973935	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,34:32:199:0.171:2	./.	./.
chr1	248436456	rs142107755	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:132,61:32:193:0.316:2	0/1:129,63:32:192:0.328:2	0/1:58,8:32:67:0.121:2	0/1:143,55:32:198:0.278:2	0/1:122,72:32:194:0.371:2	0/1:136,53:32:189:0.280:2	0/1:173,26:32:199:0.131:2	0/1:134,66:32:200:0.330:2	0/1:132,68:33:200:0.340:2	0/1:165,32:32:197:0.162:2	0/1:124,56:32:180:0.311:2
chr1	248436527	rs142669752	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:138,47:31:185:0.254:2	0/1:124,45:32:169:0.266:2	0/1:82,23:32:105:0.219:2	0/1:159,30:33:189:0.159:2	0/1:157,36:31:193:0.187:2	0/1:154,37:31:191:0.194:2	0/1:174,20:32:194:0.103:2	0/1:160,38:32:198:0.192:2	0/1:164,27:33:191:0.141:2	0/1:162,21:31:183:0.115:2	0/1:151,43:33:194:0.222:2
chr1	248436567	rs367564950	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,4:32:78:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248436582	rs200806453	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:135,18:32:159:0.118:2	0/1:96,11:33:107:0.103:2	./.	0/1:182,12:34:194:0.062:2	0/1:139,7:28:148:0.048:2	0/1:167,15:33:184:0.082:2	0/1:145,6:32:151:0.040:2	0/1:151,4:32:155:0.026:2	0/1:153,9:29:162:0.056:2	0/1:121,6:32:128:0.047:2	0/1:163,7:33:170:0.041:2
chr1	248436611	rs10888338	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,132:29:158:0.835:2	0/1:11,80:30:91:0.879:2	0/1:38,12:27:50:0.240:2	0/1:126,58:28:184:0.315:2	0/1:42,139:28:182:0.768:2	0/1:23,145:29:168:0.863:2	0/1:26,134:29:160:0.838:2	0/1:140,49:29:189:0.259:2	./.	0/1:21,123:29:144:0.854:2	0/1:131,60:30:191:0.314:2
chr1	248436616	rs71538179	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,163:28:165:0.988:2	0/1:0,95:28:95:1.00:2	0/1:36,16:28:52:0.308:2	0/1:99,87:28:186:0.468:2	0/1:4,182:27:187:0.978:2	0/1:1,170:28:171:0.994:2	0/1:6,153:28:159:0.962:2	0/1:104,89:28:193:0.461:2	0/1:171,22:29:193:0.114:2	0/1:0,148:29:148:1.00:2	0/1:106,81:29:187:0.433:2
chr1	248436638	rs200877558	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:150,41:31:191:0.215:2	0/1:126,40:32:166:0.241:2	0/1:40,13:33:53:0.245:2	0/1:144,53:33:197:0.269:2	0/1:140,55:31:195:0.282:2	0/1:162,35:31:197:0.178:2	0/1:166,28:31:195:0.144:2	0/1:144,50:32:194:0.258:2	0/1:149,41:33:192:0.216:2	0/1:158,37:30:195:0.190:2	0/1:153,40:32:193:0.207:2
chr1	248436655	rs140771747	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,4:32:68:0.059:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248436721	rs74363422	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,5:32:112:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248436805	rs28399248	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,151:32:154:0.981:2	0/1:8,152:31:160:0.950:2	0/1:34,41:32:75:0.547:2	0/1:59,103:32:162:0.636:2	0/1:7,149:32:156:0.955:2	0/1:8,158:31:166:0.952:2	0/1:56,122:32:178:0.685:2	0/1:77,80:32:157:0.510:2	0/1:117,45:32:162:0.278:2	0/1:38,124:32:162:0.765:2	0/1:60,106:31:166:0.639:2
chr1	248436807	rs377005013	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:154,7:22:165:0.043:2	./.	./.	0/1:154,7:27:163:0.043:2	0/1:163,8:28:172:0.047:2	0/1:169,7:32:178:0.040:2	./.	./.	./.	./.
chr1	248436809	rs61832700	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:105,41:32:146:0.281:2	0/1:110,54:30:164:0.329:2	0/1:54,17:31:71:0.239:2	0/1:122,45:30:167:0.269:2	0/1:121,48:30:170:0.284:2	0/1:123,51:31:174:0.293:2	0/1:159,23:30:182:0.126:2	0/1:122,39:29:161:0.242:2	0/1:120,43:30:163:0.264:2	0/1:151,30:31:181:0.166:2	0/1:117,50:30:167:0.299:2
chr1	248436811	rs61832701	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:110,42:32:152:0.276:2	0/1:111,53:32:165:0.323:2	0/1:55,17:32:72:0.236:2	0/1:125,46:31:171:0.269:2	0/1:121,48:31:169:0.284:2	0/1:124,51:31:175:0.291:2	0/1:158,23:31:181:0.127:2	0/1:123,37:31:160:0.231:2	0/1:118,43:32:161:0.267:2	0/1:149,30:32:179:0.168:2	0/1:120,49:30:170:0.290:2
chr1	248436912	rs201497316	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:180,12:27:192:0.063:2	0/1:166,21:27:187:0.112:2	0/1:61,7:28:68:0.103:2	0/1:180,11:25:191:0.058:2	0/1:168,20:27:188:0.106:2	0/1:176,17:27:194:0.088:2	0/1:176,20:27:196:0.102:2	0/1:170,18:27:188:0.096:2	0/1:168,20:28:188:0.106:2	0/1:184,9:25:193:0.047:2	0/1:174,15:28:189:0.079:2
chr1	248436925	rs146015658	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:184,7:32:191:0.037:2	./.	./.	./.	0/1:187,7:31:194:0.036:2	0/1:190,8:34:198:0.040:2	./.	./.	0/1:185,6:33:191:0.031:2	0/1:190,4:33:194:0.021:2
chr1	248436972	rs112084843	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:89,96:30:185:0.519:2	0/1:90,93:29:184:0.508:2	0/1:44,11:29:55:0.200:2	0/1:96,84:30:181:0.467:2	0/1:171,17:30:190:0.090:2	0/1:179,12:30:191:0.063:2	0/1:162,29:31:192:0.152:2	0/1:176,20:30:196:0.102:2	0/1:171,22:30:193:0.114:2	0/1:2,158:30:160:0.988:2	0/1:172,24:29:196:0.122:2
chr1	248437002	rs146010336	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:168,21:30:189:0.111:2	0/1:169,23:31:192:0.120:2	0/1:44,12:31:56:0.214:2	0/1:176,20:30:196:0.102:2	0/1:174,20:31:194:0.103:2	0/1:181,12:31:193:0.062:2	0/1:180,15:31:195:0.077:2	0/1:165,21:30:186:0.113:2	0/1:164,19:32:183:0.104:2	0/1:187,6:31:193:0.031:2	0/1:168,22:31:191:0.116:2
chr1	248437087	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:32:170:0.024:2
chr1	248457979	rs6667171	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,177:33:177:1.00:2	0/1:0,93:32:93:1.00:2	0/1:10,10:32:20:0.500:2	0/1:88,94:32:182:0.516:2	0/1:0,147:32:147:1.00:2	0/1:2,193:32:195:0.990:2	0/1:4,178:33:182:0.978:2	0/1:92,95:33:187:0.508:2	./.	0/1:3,188:32:191:0.984:2	0/1:108,84:33:192:0.438:2
chr1	248457993	rs11204625	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,80:29:168:0.476:2	./.	./.	./.	./.	./.	0/1:2,176:29:178:0.989:2	./.
chr1	248458074	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,3:32:40:0.075:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248458123	rs140090926	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,10:32:194:0.052:2	./.	./.
chr1	248458207	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	0/1:189,5:32:194:0.026:2	./.	./.	./.	./.
chr1	248458291	rs146564081	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:191,5:32:196:0.026:2	./.	./.	0/1:191,5:32:196:0.026:2	./.	./.	./.
chr1	248458419	rs142654576	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,20:32:182:0.110:2	./.	./.	./.	./.	./.
chr1	248458443	rs141434381	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,7:29:58:0.121:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248458444	rs141694594	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,7:31:58:0.121:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248458446	rs377135127	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,6:31:197:0.030:2	./.	./.	0/1:191,6:30:197:0.030:2	./.
chr1	248458485	rs199772508	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,6:30:54:0.111:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248458569	rs35216356	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:116,37:32:153:0.242:2	0/1:78,50:32:128:0.391:2	0/1:42,8:29:50:0.160:2	0/1:124,43:32:168:0.257:2	0/1:100,74:31:175:0.425:2	0/1:103,62:32:165:0.376:2	0/1:129,51:31:180:0.283:2	0/1:128,49:31:177:0.277:2	0/1:145,33:31:179:0.185:2	0/1:98,53:31:151:0.351:2	0/1:132,30:31:162:0.185:2
chr1	248458571	rs12137982	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:98,56:32:154:0.364:2	0/1:98,30:32:128:0.234:2	0/1:33,16:30:49:0.327:2	./.	0/1:81,96:32:177:0.542:2	0/1:62,98:31:160:0.613:2	0/1:67,110:31:177:0.621:2	0/1:130,46:32:177:0.261:2	./.	./.	0/1:124,39:33:164:0.239:2
chr1	248458573	rs34901845	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:126,29:31:155:0.187:2	0/1:99,30:32:129:0.233:2	0/1:42,7:31:49:0.143:2	0/1:128,35:31:163:0.215:2	0/1:146,35:31:181:0.193:2	0/1:119,45:31:164:0.274:2	0/1:156,29:31:185:0.157:2	0/1:135,40:30:175:0.229:2	0/1:148,26:30:174:0.149:2	0/1:105,42:31:147:0.286:2	0/1:142,26:31:169:0.155:2
chr1	248458575	rs36100041	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:131,29:31:160:0.181:2	0/1:102,30:32:132:0.227:2	0/1:40,7:28:47:0.149:2	0/1:127,35:32:163:0.216:2	0/1:146,36:32:182:0.198:2	0/1:121,45:32:166:0.271:2	0/1:152,29:32:181:0.160:2	0/1:137,40:31:177:0.226:2	0/1:146,26:32:172:0.151:2	0/1:103,43:31:146:0.295:2	0/1:145,25:29:171:0.147:2
chr1	248458676	rs6678138	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,138:30:139:0.993:2	0/1:1,105:30:106:0.991:2	./.	0/1:175,16:29:191:0.084:2	0/1:2,101:30:103:0.981:2	0/1:4,100:31:104:0.962:2	0/1:2,57:31:59:0.966:2	0/1:163,33:31:196:0.168:2	./.	0/1:0,29:31:29:1.00:2	0/1:156,30:30:186:0.161:2
chr1	248458689	rs6674940	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,159:32:161:0.994:2	0/1:2,131:33:133:0.985:2	0/1:41,7:33:48:0.146:2	0/1:178,8:30:186:0.043:2	0/1:19,117:33:136:0.860:2	0/1:4,128:32:132:0.970:2	0/1:4,75:33:79:0.949:2	0/1:166,30:33:196:0.153:2	./.	0/1:0,24:33:24:1.00:2	0/1:152,35:31:187:0.187:2
chr1	248458717	rs12745228	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,69:28:170:0.406:2	0/1:105,66:29:171:0.386:2	0/1:40,9:29:49:0.184:2	0/1:151,22:29:173:0.127:2	0/1:2,173:29:175:0.989:2	0/1:4,173:28:177:0.977:2	0/1:3,144:29:147:0.980:2	0/1:120,57:30:177:0.322:2	./.	0/1:0,76:29:76:1.00:2	0/1:133,51:27:184:0.277:2
chr1	248458718	rs79635253	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,96:28:168:0.578:2	0/1:68,101:29:169:0.598:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248458736	rs28409263	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:141,42:30:183:0.230:2	./.	./.	0/1:178,5:28:183:0.027:2	./.	./.	0/1:0,110:30:110:1.00:2	./.
chr1	248458760	rs12135684	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:122,68:31:190:0.358:2	./.	./.	0/1:98,82:32:180:0.456:2	0/1:189,7:31:196:0.036:2	./.	0/1:0,143:31:143:1.00:2	./.
chr1	248487016	rs4451579	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,93:30:181:0.514:2	./.	./.	./.	./.	./.	0/1:2,167:31:169:0.988:2	./.
chr1	248487172	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,5:28:191:0.026:2	./.	./.
chr1	248487205	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.
chr1	248487300	rs4916129	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:103,86:31:189:0.455:2	0/1:93,70:31:163:0.429:2	0/1:27,9:31:36:0.250:2	./.	0/1:5,121:30:126:0.960:2	0/1:11,177:30:188:0.941:2	0/1:8,135:30:143:0.944:2	0/1:131,62:30:193:0.321:2	./.	./.	0/1:115,79:31:194:0.407:2
chr1	248487312	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:133,6:33:139:0.043:2	./.	./.	./.	./.	./.	./.
chr1	248487338	rs4916130	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,180:31:180:1.00:2	0/1:0,160:32:160:1.00:2	0/1:24,14:32:38:0.368:2	0/1:106,86:31:192:0.448:2	0/1:0,160:31:160:1.00:2	0/1:1,180:31:181:0.994:2	0/1:1,134:32:135:0.993:2	0/1:115,71:31:186:0.382:2	./.	0/1:1,185:31:188:0.995:2	0/1:112,75:32:187:0.401:2
chr1	248487638	rs7555310	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:7,168:31:176:0.960:2	0/1:11,123:32:134:0.918:2	0/1:11,11:33:22:0.500:2	0/1:93,94:31:187:0.503:2	0/1:6,177:31:183:0.967:2	0/1:2,179:32:181:0.989:2	0/1:9,176:32:185:0.951:2	0/1:109,85:32:196:0.438:2	./.	0/1:8,171:32:179:0.955:2	0/1:97,90:32:187:0.481:2
chr1	248487640	rs139110575	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:177,6:28:183:0.033:2	0/1:128,8:27:137:0.059:2	./.	./.	0/1:185,5:29:190:0.026:2	./.	0/1:185,8:30:193:0.041:2	./.	./.	0/1:179,6:27:185:0.032:2	./.
chr1	248487701	rs41304036	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,80:30:171:0.468:2
chr1	248487715	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:144,4:31:148:0.027:2	./.	./.	./.	./.	./.	./.
chr1	248487741	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:141,5:30:146:0.034:2	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2
chr1	248487742	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:140,5:31:145:0.034:2	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2
chr1	248487768	rs7555424	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,159:33:162:0.981:2	0/1:2,98:32:100:0.980:2	0/1:12,9:31:21:0.429:2	0/1:94,91:33:185:0.492:2	0/1:8,113:32:121:0.934:2	0/1:8,181:32:189:0.958:2	0/1:2,149:33:151:0.987:2	0/1:95,89:32:184:0.484:2	./.	0/1:2,173:32:175:0.989:2	0/1:82,83:33:165:0.503:2
chr1	248487811	rs142511770	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,5:33:91:0.055:2	0/1:148,5:34:153:0.033:2	./.	./.	./.	./.	./.
chr1	248512094	rs28728105	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,106:33:108:0.981:2	0/1:0,65:33:65:1.00:2	0/1:11,9:32:20:0.450:2	./.	0/1:1,101:32:102:0.990:2	0/1:2,124:32:126:0.984:2	0/1:1,106:33:107:0.991:2	0/1:77,53:33:130:0.408:2	./.	./.	0/1:94,68:33:162:0.420:2
chr1	248512498	rs28448343	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,56:30:120:0.467:2	./.	./.	./.	./.	./.	0/1:1,85:30:86:0.988:2	./.
chr1	248512637	rs2039824	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,189:32:190:0.995:2	0/1:2,120:31:122:0.984:2	0/1:11,7:32:18:0.389:2	./.	0/1:2,172:31:174:0.989:2	0/1:6,183:31:189:0.968:2	0/1:3,178:31:181:0.983:2	0/1:120,77:31:197:0.391:2	./.	./.	0/1:102,94:32:196:0.480:2
chr1	248512749	rs28377739	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,186:33:187:0.995:2	0/1:1,166:32:167:0.994:2	0/1:19,10:32:29:0.345:2	./.	0/1:1,192:32:193:0.995:2	0/1:6,179:32:185:0.968:2	0/1:1,178:33:179:0.994:2	0/1:103,90:32:193:0.466:2	./.	./.	0/1:107,80:32:187:0.428:2
chr1	248512767	rs28545014	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,184:30:185:0.995:2	0/1:1,140:31:141:0.993:2	0/1:19,6:31:25:0.240:2	./.	0/1:2,178:30:180:0.989:2	0/1:7,172:30:179:0.961:2	0/1:0,182:30:183:1.00:2	0/1:105,89:30:196:0.459:2	./.	./.	0/1:105,78:31:183:0.426:2
chr1	248524992	rs45552134	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:29:4:0.750:2	./.
chr1	248525021	rs45438195	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,5:21:6:0.833:2	./.
chr1	248525053	rs28415565	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,6:27:10:0.600:2	./.
chr1	248525060	rs28491677	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:133,12:30:145:0.083:2	./.	./.	./.	./.	./.	0/1:4,14:26:18:0.778:2	./.
chr1	248525071	rs28499298	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:122,22:33:144:0.153:2	./.	./.	./.	./.	./.	0/1:4,39:33:43:0.907:2	./.
chr1	248525100	rs73146195	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:136,29:32:166:0.176:2	0/1:145,36:32:181:0.199:2	./.	0/1:146,36:31:182:0.198:2	./.	0/1:175,18:30:193:0.093:2	./.	0/1:161,31:32:192:0.161:2	./.	./.	0/1:180,9:33:189:0.048:2
chr1	248525135	rs76721536	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:115,55:30:170:0.324:2	0/1:120,62:31:183:0.341:2	./.	0/1:127,56:31:183:0.306:2	./.	0/1:155,33:31:188:0.176:2	./.	0/1:153,40:31:193:0.207:2	./.	./.	0/1:167,17:30:184:0.092:2
chr1	248525138	rs75096121	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:127,44:30:171:0.257:2	0/1:121,60:32:181:0.331:2	./.	0/1:128,55:31:183:0.301:2	./.	0/1:154,27:30:181:0.149:2	./.	0/1:156,38:29:194:0.196:2	./.	./.	0/1:166,16:30:182:0.088:2
chr1	248525146	rs28482938	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,46:28:185:0.249:2	./.	./.	./.	./.	./.	0/1:7,185:30:192:0.964:2	./.
chr1	248525193	rs28655275	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:157,37:31:194:0.191:2	./.	./.	./.	./.	./.	0/1:9,167:31:177:0.949:2	./.
chr1	248525285	rs28637620	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:190,4:33:194:0.021:2	./.	0/1:135,31:33:166:0.187:2	./.	./.	./.	./.	./.	0/1:6,56:31:62:0.903:2	./.
chr1	248525290	rs202028348	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,7:28:146:0.048:2	./.	./.	./.	./.	./.	0/1:5,27:29:32:0.844:2	./.
chr1	248525291	rs28540568	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,7:30:146:0.048:2	./.	./.	./.	./.	./.	0/1:5,29:31:34:0.853:2	./.
chr1	248525308	rs201411128	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:179,5:32:184:0.027:2	0/1:184,9:31:193:0.047:2	./.	./.	0/1:192,7:31:199:0.035:2	./.	./.	./.	./.	./.	./.
chr1	248525329	rs376643959	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:166,12:28:178:0.067:2	./.	./.	./.	./.	./.	0/1:87,20:28:107:0.187:2	./.
chr1	248525330	rs56721857	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:147,31:27:178:0.174:2	./.	./.	./.	./.	./.	0/1:29,78:29:107:0.729:2	./.
chr1	248525647	rs28405645	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:122,70:29:192:0.365:2	./.	./.	./.	./.	./.	0/1:10,123:30:133:0.925:2	./.
chr1	248525650	rs28602650	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:127,68:30:195:0.349:2	./.	./.	./.	./.	./.	0/1:12,124:30:136:0.912:2	./.
chr1	248525651	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:180,7:26:187:0.037:2	./.	./.	0/1:189,6:27:195:0.031:2	0/1:187,9:28:196:0.046:2	./.	./.
chr1	248525657	rs28718027	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:186,8:32:194:0.041:2	0/1:184,11:33:195:0.056:2	./.	0/1:112,80:32:192:0.417:2	0/1:181,9:31:191:0.047:2	0/1:189,10:30:199:0.050:2	0/1:189,8:33:197:0.041:2	0/1:191,8:32:199:0.040:2	0/1:188,7:32:195:0.036:2	0/1:4,166:33:170:0.976:2	0/1:183,8:31:192:0.042:2
chr1	248525673	rs111303378	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,7:31:191:0.037:2	0/1:187,10:30:197:0.051:2	./.	./.	./.	0/1:192,5:29:197:0.025:2	./.	./.	./.	./.	./.
chr1	248525744	rs150378421	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,6:32:192:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248525780	rs28698997	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,85:32:194:0.438:2	./.	./.	./.	./.	./.	0/1:2,186:32:188:0.989:2	./.
chr1	248525827	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:188,5:32:193:0.026:2	./.	./.	./.	./.	./.	./.
chr1	248525831	.	G	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:182,6:34:188:0.032:2	./.	./.	0/1:160,5:32:165:0.030:2	0/1:173,9:33:182:0.049:2	./.	0/1:184,6:33:190:0.032:2	0/1:187,4:36:191:0.021:2	./.	./.
chr1	248525896	.	A	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:131,5:31:136:0.037:2	./.	./.	./.	0/1:123,9:30:132:0.068:2	./.	0/1:103,6:33:109:0.055:2	0/1:99,4:33:103:0.039:2	./.	0/1:129,4:32:133:0.030:2
chr1	248550970	rs7417616	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,21:29:57:0.368:2	./.	./.	./.	./.	./.	0/1:1,52:29:53:0.981:2	./.
chr1	248550976	rs6587467	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,44:33:69:0.638:2	0/1:14,17:32:31:0.548:2	./.	0/1:36,26:33:62:0.419:2	0/1:0,36:31:36:1.00:2	0/1:0,68:32:68:1.00:2	0/1:23,23:33:46:0.500:2	0/1:24,29:33:53:0.547:2	./.	0/1:1,60:33:61:0.984:2	0/1:0,79:33:79:1.00:2
chr1	248551203	rs6700947	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,37:29:77:0.481:2	./.	./.	./.	./.	./.	0/1:2,39:29:41:0.951:2	./.
chr1	248551560	rs954474	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,93:32:194:0.479:2	./.	./.	./.	./.	./.	0/1:1,181:32:182:0.995:2	./.
chr1	248551636	rs954475	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,92:33:195:0.472:2	./.	./.	./.	./.	./.	0/1:2,173:32:175:0.989:2	./.
chr1	248551709	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,75:31:183:0.410:2	./.
chr1	248569369	rs28599722	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:37,40:29:77:0.519:2	0/1:24,20:28:44:0.455:2	./.	./.	0/1:1,44:28:45:0.978:2	0/1:1,50:28:51:0.980:2	0/1:33,20:28:53:0.377:2	0/1:47,22:29:69:0.319:2	./.	./.	0/1:0,95:28:95:1.00:2
chr1	248616401	rs77680148	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:69,125:32:194:0.644:2	0/1:63,132:32:195:0.677:2	./.	0/1:122,74:31:196:0.378:2	./.	0/1:155,42:30:197:0.213:2	./.	0/1:159,39:30:198:0.197:2	./.	0/1:123,75:31:198:0.379:2	0/1:144,52:30:197:0.265:2
chr1	248616408	rs73147579	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:74,123:32:197:0.624:2	0/1:62,135:32:197:0.685:2	./.	0/1:122,75:32:197:0.381:2	./.	0/1:152,44:32:196:0.224:2	./.	0/1:159,38:32:197:0.193:2	./.	0/1:110,86:32:196:0.439:2	0/1:152,45:32:197:0.228:2
chr1	248616749	rs151176830	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:34:11:0.364:2	0/1:186,4:33:190:0.021:2
chr1	248616764	rs376553658	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,5:30:195:0.026:2	./.	./.	./.	./.	./.	0/1:18,13:31:31:0.419:2	./.
chr1	248616883	rs143551105	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,32:32:51:0.627:2	0/1:148,44:32:192:0.229:2	0/1:90,93:31:183:0.508:2	0/1:143,47:32:190:0.247:2	0/1:102,88:32:190:0.463:2	0/1:159,35:32:195:0.180:2	0/1:106,79:33:185:0.427:2	0/1:101,85:32:186:0.457:2	0/1:111,53:32:164:0.323:2
chr1	248617028	rs78338008	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,3:32:15:0.200:2	0/1:131,9:33:140:0.064:2	0/1:80,8:30:88:0.091:2	0/1:129,9:31:138:0.065:2	0/1:96,18:31:114:0.158:2	0/1:167,9:32:176:0.051:2	0/1:88,19:32:107:0.178:2	0/1:71,12:32:83:0.145:2	0/1:75,15:33:90:0.167:2
chr1	248617050	rs76819842	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,5:28:131:0.038:2	0/1:103,9:28:112:0.080:2	./.	0/1:82,5:31:87:0.057:2	0/1:70,6:30:76:0.079:2	./.
chr1	248617051	rs74660299	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,5:29:133:0.038:2	0/1:103,9:28:112:0.080:2	./.	0/1:81,5:31:86:0.058:2	0/1:70,6:31:76:0.079:2	./.
chr1	248637046	rs148025314	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:103,79:30:182:0.434:2	0/1:116,73:30:189:0.386:2	./.	0/1:86,97:30:183:0.530:2	./.	0/1:146,40:29:186:0.215:2	./.	0/1:146,42:30:188:0.223:2	./.	0/1:65,132:31:197:0.670:2	./.
chr1	248637065	rs139758663	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:108,75:30:185:0.410:2	0/1:119,68:29:187:0.364:2	./.	0/1:143,48:31:191:0.251:2	./.	0/1:152,40:31:193:0.208:2	./.	0/1:150,42:30:192:0.219:2	./.	./.	./.
chr1	248637115	rs139558207	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,100:33:152:0.662:2	0/1:62,98:32:160:0.613:2	0/1:46,3:35:49:0.061:2	0/1:96,96:33:192:0.500:2	./.	0/1:149,38:33:187:0.203:2	./.	0/1:153,37:32:190:0.195:2	./.	0/1:88,83:32:171:0.485:2	0/1:139,35:33:177:0.201:2
chr1	248637199	rs148748995	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,21:33:150:0.140:2	0/1:89,10:32:99:0.101:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,23:31:151:0.152:2
chr1	248637256	rs79885009	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.
chr1	248637262	rs1770110	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:155,19:27:174:0.109:2	./.	./.	0/1:92,96:30:188:0.511:2	./.	./.	./.	./.
chr1	248637291	rs1770109	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:136,43:30:182:0.240:2	0/1:88,22:30:110:0.200:2	./.	0/1:155,33:31:189:0.176:2	./.	0/1:169,11:31:180:0.061:2	./.	0/1:188,7:32:195:0.036:2	./.	0/1:1,37:32:38:0.974:2	./.
chr1	248637362	rs77686526	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:85,100:32:185:0.541:2	0/1:83,102:32:185:0.551:2	./.	0/1:101,83:32:184:0.451:2	./.	0/1:157,37:33:194:0.191:2	./.	0/1:147,50:33:197:0.254:2	./.	0/1:49,102:33:151:0.675:2	0/1:177,4:33:181:0.022:2
chr1	248637367	rs1770108	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:45,6:26:51:0.118:2	0/1:165,20:26:185:0.108:2	0/1:153,41:26:194:0.211:2	0/1:183,12:25:196:0.062:2	0/1:155,38:26:193:0.197:2	0/1:183,12:26:195:0.062:2	0/1:151,45:27:197:0.230:2	0/1:117,42:26:160:0.264:2	0/1:116,60:26:178:0.341:2
chr1	248637381	rs139789199	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,47:31:195:0.241:2	./.	./.	./.	./.	./.	./.	./.
chr1	248637391	rs150934113	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,13:30:179:0.073:2	0/1:166,16:31:183:0.088:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,14:31:174:0.080:2
chr1	248637416	rs75924848	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:166,18:31:184:0.098:2	0/1:158,26:32:184:0.141:2	./.	0/1:160,34:31:194:0.175:2	./.	./.	./.	./.	./.	0/1:120,51:33:171:0.298:2	0/1:161,21:33:182:0.115:2
chr1	248637417	rs74711605	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:167,18:32:185:0.097:2	0/1:159,26:32:185:0.141:2	./.	0/1:161,32:31:193:0.166:2	./.	./.	./.	./.	./.	0/1:120,51:32:171:0.298:2	0/1:162,21:33:183:0.115:2
chr1	248637480	rs74498773	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,44:29:194:0.227:2	0/1:158,36:28:194:0.186:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,29:28:191:0.152:2
chr1	248637543	rs139993642	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:111,83:33:194:0.428:2	0/1:99,92:32:191:0.482:2	./.	0/1:114,84:33:198:0.424:2	./.	0/1:161,33:33:194:0.170:2	./.	0/1:149,48:33:197:0.244:2	./.	0/1:113,83:33:196:0.423:2	./.
chr1	248637544	rs143898659	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,36:32:197:0.183:2	./.	./.	./.
chr1	248651905	rs199833498	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:165,27:33:192:0.141:2	0/1:142,51:32:193:0.264:2	./.	0/1:157,38:33:195:0.195:2	./.	0/1:170,27:32:197:0.137:2	./.	0/1:173,24:32:197:0.122:2	./.	./.	./.
chr1	248651927	rs201060805	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:150,38:32:188:0.202:2	0/1:138,52:32:190:0.274:2	0/1:0,56:32:56:1.00:2	0/1:96,102:33:198:0.515:2	0/1:76,107:32:183:0.585:2	0/1:0,172:32:172:1.00:2	0/1:0,184:33:184:1.00:2	0/1:97,97:33:194:0.500:2	0/1:94,97:34:191:0.508:2	0/1:0,175:32:175:1.00:2	0/1:0,181:32:181:1.00:2
chr1	248652011	rs150528589	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:93,75:32:169:0.446:2	0/1:95,48:31:143:0.336:2	./.	0/1:135,45:31:180:0.250:2	./.	0/1:158,27:31:185:0.146:2	./.	0/1:168,18:32:186:0.097:2	./.	0/1:192,7:31:199:0.035:2	./.
chr1	248652023	rs139516854	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:83,68:32:151:0.450:2	0/1:95,43:32:138:0.312:2	./.	0/1:143,32:31:175:0.183:2	./.	0/1:161,20:32:181:0.110:2	./.	0/1:174,14:31:188:0.074:2	./.	./.	./.
chr1	248652058	rs199730299	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:91,45:30:136:0.331:2	0/1:104,28:32:132:0.212:2	./.	0/1:149,18:29:167:0.108:2	./.	0/1:168,7:31:175:0.040:2	./.	0/1:169,11:31:180:0.061:2	./.	./.	0/1:176,8:30:185:0.043:2
chr1	248652061	rs200544370	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:100,46:29:146:0.315:2	0/1:103,28:31:131:0.214:2	./.	0/1:159,17:28:177:0.097:2	./.	0/1:172,6:28:179:0.034:2	./.	0/1:176,11:30:187:0.059:2	./.	./.	0/1:176,9:29:185:0.049:2
chr1	248652069	rs201157031	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:178,6:30:184:0.033:2	./.	./.	./.	./.	./.	0/1:187,9:31:196:0.046:2	./.
chr1	248652071	rs199723306	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:100,68:31:168:0.405:2	0/1:112,49:32:161:0.304:2	./.	0/1:144,41:32:185:0.222:2	./.	0/1:174,15:30:189:0.079:2	./.	0/1:175,16:32:191:0.084:2	./.	0/1:187,9:32:196:0.046:2	0/1:171,19:30:190:0.100:2
chr1	248652116	rs201725598	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,12:28:196:0.061:2	./.	./.	./.	./.	./.	0/1:185,11:30:196:0.056:2	./.
chr1	248652175	rs199519459	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:63,125:32:188:0.665:2	0/1:57,127:31:184:0.690:2	./.	0/1:101,97:32:198:0.490:2	./.	0/1:161,32:32:193:0.166:2	./.	0/1:167,32:31:199:0.161:2	./.	0/1:168,24:32:192:0.125:2	./.
chr1	248652231	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,6:32:194:0.031:2	./.	./.	./.	./.	./.	0/1:166,28:33:194:0.144:2	./.
chr1	248652252	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,15:30:195:0.077:2	./.
chr1	248652350	rs200959275	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:55,127:32:182:0.698:2	0/1:48,145:32:193:0.751:2	./.	0/1:102,94:33:196:0.480:2	./.	0/1:150,45:31:195:0.231:2	./.	0/1:150,46:32:196:0.235:2	./.	./.	0/1:144,47:31:191:0.246:2
chr1	248652570	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,5:30:189:0.026:2	./.
chr1	248652573	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,6:27:193:0.031:2	./.
chr1	248652574	rs201387497	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:41,145:32:186:0.780:2	0/1:47,142:31:189:0.751:2	./.	0/1:123,72:31:195:0.369:2	./.	0/1:149,46:31:195:0.236:2	./.	0/1:163,33:29:196:0.168:2	./.	0/1:188,5:27:193:0.026:2	0/1:137,53:32:190:0.279:2
chr1	248652596	rs199639744	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:51,131:30:182:0.720:2	0/1:53,133:29:187:0.715:2	./.	0/1:118,75:30:193:0.389:2	./.	0/1:155,42:30:197:0.213:2	./.	0/1:166,29:29:195:0.149:2	./.	./.	0/1:148,46:28:194:0.237:2
chr1	248685143	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:185,6:25:191:0.031:2	./.	./.	./.	./.	./.	./.
chr1	248685253	rs9727474	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,126:29:126:1.00:2	0/1:0,77:28:77:1.00:2	0/1:0,14:28:14:1.00:2	0/1:0,133:28:133:1.00:2	0/1:0,148:28:148:1.00:2	0/1:0,143:28:144:1.00:2	0/1:0,158:28:158:1.00:2	0/1:0,133:28:133:1.00:2	0/1:0,163:30:163:1.00:2	0/1:0,141:29:141:1.00:2	0/1:0,131:28:131:1.00:2
chr1	248685543	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,13:31:195:0.067:2	./.	./.	./.	./.	./.
chr1	248685719	rs9330305	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,25:32:63:0.397:2	0/1:19,14:32:33:0.424:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,37:32:63:0.587:2
chr1	248722086	.	T	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:59,128:30:187:0.684:2	0/1:53,133:29:186:0.715:2	./.	0/1:117,75:30:193:0.391:2	./.	0/1:158,37:29:195:0.190:2	./.	0/1:153,40:30:193:0.207:2	./.	0/1:190,6:27:196:0.031:2	0/1:160,33:29:194:0.171:2
chr1	248722108	rs201343161	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:56,136:31:192:0.708:2	0/1:53,137:31:190:0.721:2	./.	0/1:109,91:31:200:0.455:2	./.	0/1:152,43:31:195:0.221:2	./.	0/1:155,41:30:196:0.209:2	./.	0/1:191,5:31:196:0.026:2	0/1:164,34:31:198:0.172:2
chr1	248722332	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:49,140:32:189:0.741:2	0/1:54,136:32:190:0.716:2	./.	0/1:105,88:33:193:0.456:2	./.	0/1:160,35:33:195:0.179:2	./.	0/1:154,43:33:197:0.218:2	./.	./.	0/1:152,45:32:197:0.228:2
chr1	248722361	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,6:33:200:0.030:2	./.
chr1	248722430	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:189,7:30:196:0.036:2	./.	./.	./.	./.	./.	0/1:179,11:29:190:0.058:2	./.
chr1	248722451	rs376895464	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:174,21:32:195:0.108:2	./.	./.	./.	./.	./.	0/1:157,32:33:190:0.169:2	./.
chr1	248722507	rs199706827	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:65,123:31:188:0.654:2	0/1:67,122:31:189:0.646:2	./.	0/1:104,92:32:196:0.469:2	./.	0/1:166,25:32:191:0.131:2	./.	0/1:163,29:32:192:0.151:2	./.	0/1:167,28:32:195:0.144:2	./.
chr1	248722566	rs200777722	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:169,25:29:194:0.129:2	./.	./.	./.	./.	./.	0/1:169,27:31:196:0.138:2	./.
chr1	248722611	rs200169450	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:57,58:32:115:0.504:2	0/1:64,59:31:123:0.480:2	./.	0/1:128,36:31:164:0.220:2	./.	0/1:177,5:31:182:0.027:2	./.	./.	0/1:196,4:32:200:0.020:2	0/1:174,13:32:187:0.070:2	0/1:153,18:32:171:0.105:2
chr1	248722613	rs199532952	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:146,15:28:161:0.093:2	./.	./.	./.	./.	./.	0/1:180,12:26:192:0.063:2	./.
chr1	248722621	rs201345491	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:61,42:29:103:0.408:2	0/1:67,38:31:105:0.362:2	./.	0/1:140,14:28:154:0.091:2	./.	./.	./.	./.	./.	./.	0/1:153,9:29:162:0.056:2
chr1	248722624	rs200919674	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:57,43:29:101:0.430:2	0/1:67,37:31:104:0.356:2	./.	0/1:137,16:30:153:0.105:2	./.	./.	./.	./.	./.	./.	0/1:152,7:31:160:0.044:2
chr1	248722659	rs201896684	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:36,74:31:110:0.673:2	0/1:33,72:31:105:0.686:2	./.	0/1:129,23:31:152:0.151:2	./.	0/1:154,20:28:174:0.115:2	./.	0/1:158,10:31:168:0.060:2	./.	./.	0/1:115,49:32:164:0.299:2
chr1	248722671	rs140437806	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:25,96:31:121:0.793:2	0/1:20,103:31:123:0.837:2	./.	0/1:83,78:32:161:0.484:2	./.	0/1:150,24:31:174:0.138:2	./.	0/1:141,23:32:164:0.140:2	./.	0/1:141,47:31:188:0.250:2	0/1:122,47:32:169:0.278:2
chr1	248722722	rs199528787	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,81:31:172:0.471:2	0/1:99,77:30:176:0.438:2	0/1:0,37:30:37:1.00:2	0/1:23,151:31:174:0.868:2	0/1:3,184:30:187:0.984:2	0/1:1,184:30:185:0.995:2	0/1:4,182:30:186:0.978:2	0/1:2,175:31:177:0.989:2	0/1:0,180:31:181:1.00:2	0/1:23,153:31:176:0.869:2	0/1:103,80:30:183:0.437:2
chr1	248722739	rs200935922	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:172,9:29:181:0.050:2	./.	./.	./.	./.	./.	0/1:172,9:33:181:0.050:2	./.
chr1	248722777	rs77589892	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:3,167:33:170:0.982:2	0/1:1,175:32:176:0.994:2	./.	0/1:42,140:33:182:0.769:2	./.	0/1:145,49:32:194:0.253:2	./.	0/1:134,61:33:195:0.313:2	./.	./.	0/1:133,58:33:192:0.304:2
chr1	248737166	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,35:32:198:0.177:2	./.	./.	./.
chr1	248737167	rs148590921	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:75,49:33:124:0.395:2	0/1:51,26:32:77:0.338:2	./.	0/1:104,94:33:198:0.475:2	./.	0/1:155,45:32:200:0.225:2	./.	0/1:149,49:32:198:0.247:2	./.	0/1:105,83:33:188:0.441:2	./.
chr1	248737230	rs199863869	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,34:29:93:0.366:2	0/1:26,26:30:52:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,22:31:123:0.179:2
chr1	248737259	rs189248971	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:26:43:1.00:2	0/1:0,21:26:21:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,85:27:85:1.00:2	0/1:0,63:27:64:1.00:2	0/1:0,46:26:46:1.00:2	0/1:0,116:27:116:1.00:2	0/1:0,63:26:63:1.00:2	0/1:0,116:29:116:1.00:2	0/1:0,89:28:90:1.00:2	0/1:0,97:27:98:1.00:2
chr1	248737293	rs200427293	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:48,4:30:53:0.077:2	./.	./.	0/1:143,13:32:156:0.083:2	./.	./.	./.	./.	./.	0/1:164,11:32:175:0.063:2	./.
chr1	248737294	rs201475070	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,13:33:157:0.083:2	./.	./.	./.	./.	./.	0/1:170,11:34:181:0.061:2	./.
chr1	248737319	rs77940099	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,28:30:77:0.364:2	0/1:31,25:32:56:0.446:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,25:31:147:0.171:2
chr1	248737329	rs75095367	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,135:31:179:0.754:2	./.	./.	./.	./.	./.	./.	./.
chr1	248737343	rs61833441	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:57,56:31:113:0.496:2	0/1:54,34:31:88:0.386:2	./.	0/1:144,38:31:182:0.209:2	./.	0/1:110,38:31:148:0.257:2	./.	0/1:120,31:29:151:0.205:2	./.	0/1:166,15:31:181:0.083:2	./.
chr1	248737348	rs61833442	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:2,118:32:120:0.983:2	0/1:0,94:32:94:1.00:2	./.	0/1:142,40:32:182:0.220:2	./.	0/1:119,42:33:161:0.261:2	./.	0/1:129,36:31:165:0.218:2	./.	0/1:163,15:33:178:0.084:2	0/1:120,39:31:159:0.245:2
chr1	248737454	rs79750523	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:146,46:30:192:0.240:2	./.	./.	0/1:169,6:27:175:0.034:2	./.	./.	./.	./.
chr1	248737511	rs150608839	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,44:32:194:0.227:2	0/1:100,41:32:141:0.291:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,54:32:194:0.280:2
chr1	248737595	rs150601708	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:39,130:32:169:0.769:2	0/1:30,106:32:136:0.779:2	./.	0/1:118,74:33:192:0.385:2	./.	0/1:168,24:33:192:0.125:2	./.	0/1:162,35:33:197:0.178:2	0/1:195,4:33:199:0.020:2	0/1:121,71:33:192:0.370:2	0/1:160,32:33:192:0.167:2
chr1	248737645	rs143071665	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:85,81:28:166:0.488:2	0/1:66,53:28:119:0.445:2	./.	0/1:160,29:28:189:0.153:2	./.	0/1:170,24:30:194:0.124:2	./.	0/1:150,31:29:182:0.171:2	./.	./.	./.
chr1	248737664	rs147489167	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:67,62:30:129:0.481:2	0/1:48,36:30:85:0.429:2	./.	0/1:126,45:29:171:0.263:2	./.	0/1:169,21:30:190:0.111:2	./.	0/1:158,19:30:177:0.107:2	./.	0/1:151,42:30:193:0.218:2	./.
chr1	248737734	rs139616012	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,6:25:9:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248756502	rs41269353	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,8:32:16:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248789504	rs1892442	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,2:28:2:1.00:2	0/1:0,2:29:2:1.00:2	0/1:0,24:29:24:1.00:2	0/1:2,109:31:111:0.982:2	0/1:1,173:30:174:0.994:2	0/1:0,101:30:101:1.00:2	0/1:0,193:30:193:1.00:2	0/1:0,132:30:132:1.00:2	0/1:0,186:30:186:1.00:2	0/1:0,187:30:187:1.00:2	0/1:0,189:30:189:1.00:2
chr1	248789753	rs28555577	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:87,70:29:157:0.446:2	./.	./.	./.	./.	./.	./.
chr1	248790075	rs1892443	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:29:3:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,51:29:51:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,78:30:78:1.00:2	0/1:1,42:29:43:0.977:2	0/1:0,49:30:49:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,59:29:59:1.00:2
chr1	248790167	rs34397542	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,21:32:70:0.300:2	./.	./.	./.	./.	./.	./.
chr1	248790199	rs34674180	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,31:33:82:0.378:2	./.	./.	./.	./.	./.	./.
chr1	248801610	rs150878651	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,5:31:28:0.179:2	0/1:12,7:26:19:0.368:2	0/1:40,5:31:45:0.111:2	0/1:10,4:32:14:0.286:2	0/1:37,5:28:42:0.119:2	0/1:16,8:32:24:0.333:2	0/1:27,10:29:37:0.270:2	0/1:18,7:30:25:0.280:2
chr1	248801611	rs143981271	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,5:28:28:0.179:2	0/1:14,6:28:20:0.300:2	0/1:41,5:30:46:0.109:2	0/1:12,4:29:16:0.250:2	0/1:37,5:29:42:0.119:2	0/1:16,8:30:24:0.333:2	0/1:27,10:27:37:0.270:2	0/1:21,7:30:28:0.250:2
chr1	248801633	rs74901534	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,13:31:53:0.245:2	0/1:21,10:33:31:0.323:2	0/1:55,12:32:67:0.179:2	0/1:27,16:30:43:0.372:2	0/1:47,13:32:60:0.217:2	0/1:29,22:33:51:0.431:2	0/1:35,22:31:58:0.386:2	0/1:37,19:31:56:0.339:2
chr1	248801778	rs201643849	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:170,4:31:174:0.023:2	./.	0/1:16,14:32:30:0.467:2	0/1:126,64:31:190:0.337:2	0/1:72,119:32:191:0.623:2	0/1:133,54:32:187:0.289:2	0/1:56,128:32:184:0.696:2	0/1:123,54:32:177:0.305:2	0/1:71,97:33:168:0.577:2	0/1:108,80:32:189:0.426:2	0/1:67,102:32:169:0.604:2
chr1	248801897	rs79303917	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,87:31:196:0.444:2	./.	./.	./.	./.	./.	0/1:102,93:31:195:0.477:2	./.
chr1	248801912	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248801950	rs200737338	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,19:33:64:0.297:2
chr1	248802257	rs145908089	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,6:32:6:1.00:2	./.	0/1:2,6:30:8:0.750:2	0/1:54,4:33:58:0.069:2	0/1:1,2:32:3:0.667:2	./.	0/1:36,6:32:42:0.143:2
chr1	248802469	rs199678335	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,7:31:7:1.00:2	0/1:0,4:32:5:1.00:2	./.	0/1:0,3:32:3:1.00:2	./.	./.	0/1:3,3:32:6:0.500:2	./.	./.	0/1:1,4:29:5:0.800:2	0/1:1,7:28:8:0.875:2
chr1	248813271	rs2802081	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,12:31:12:1.00:2	0/1:0,10:33:10:1.00:2	./.	./.	0/1:100,37:32:138:0.270:2	0/1:83,34:31:117:0.291:2	0/1:170,24:31:194:0.124:2	0/1:103,31:31:134:0.231:2	0/1:169,27:32:196:0.138:2	./.	0/1:158,24:32:182:0.132:2
chr1	248813280	rs116125618	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:92,48:31:140:0.343:2	./.	./.	./.	./.	./.	./.
chr1	248813292	rs71199329	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:30:11:1.00:2	0/1:0,4:27:4:1.00:2	./.	./.	./.	0/1:92,17:29:109:0.156:2	0/1:181,15:29:196:0.077:2	0/1:124,10:28:134:0.075:2	0/1:177,9:26:186:0.048:2	./.	0/1:169,10:28:179:0.056:2
chr1	248813343	rs1938148	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:30:6:1.00:2	0/1:0,3:33:3:1.00:2	./.	./.	0/1:178,12:31:190:0.063:2	0/1:117,6:34:123:0.049:2	0/1:185,7:29:192:0.036:2	./.	./.	./.	0/1:180,5:33:185:0.027:2
chr1	248813483	rs151290740	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	0/1:1,3:27:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248813542	rs77685347	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,73:32:90:0.811:2	./.	./.	./.	./.	./.	./.
chr1	248813547	rs201161767	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,4:32:7:0.667:2	0/1:1,2:33:3:0.667:2	./.	0/1:0,9:34:10:1.00:2	0/1:79,14:32:93:0.151:2	0/1:0,14:33:14:1.00:2	0/1:1,15:33:16:0.938:2	0/1:3,10:33:13:0.769:2	0/1:0,14:33:14:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,25:31:25:1.00:2
chr1	248813601	rs144939744	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,13:32:75:0.173:2	0/1:35,9:32:45:0.205:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr1	248813695	rs139620204	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:107,16:31:123:0.130:2	0/1:70,12:30:82:0.146:2	./.	0/1:152,31:30:183:0.169:2	./.	./.	./.	./.	./.	./.	./.
chr1	248813723	rs138825902	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:92,9:30:101:0.089:2	0/1:51,6:31:57:0.105:2	./.	./.	0/1:113,66:29:179:0.369:2	./.	./.	./.	./.	./.	./.
chr1	248813785	rs200036975	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:5,62:30:68:0.925:2	0/1:3,41:31:44:0.932:2	0/1:20,10:30:30:0.333:2	./.	./.	0/1:90,99:30:189:0.524:2	./.	0/1:100,76:30:176:0.432:2	./.	./.	0/1:119,62:31:182:0.343:2
chr1	248813827	rs1782241	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:113,5:27:118:0.042:2	./.	0/1:16,8:33:24:0.333:2	0/1:2,90:32:92:0.978:2	0/1:144,45:31:189:0.238:2	0/1:167,27:32:194:0.139:2	0/1:9,123:32:134:0.932:2	0/1:150,45:30:195:0.231:2	0/1:8,97:32:105:0.924:2	0/1:0,121:31:121:1.00:2	0/1:143,48:31:191:0.251:2
chr1	248813901	rs144600224	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,60:33:142:0.423:2	0/1:49,35:32:84:0.417:2	0/1:15,12:32:27:0.444:2	0/1:23,110:32:133:0.827:2	0/1:23,154:32:177:0.870:2	0/1:59,126:32:185:0.681:2	0/1:40,131:32:171:0.766:2	0/1:20,130:32:150:0.867:2	0/1:23,105:33:128:0.820:2	0/1:1,132:33:133:0.992:2	0/1:143,41:32:184:0.223:2
chr1	248813972	rs147604785	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:123,34:32:157:0.217:2	./.	0/1:131,37:32:168:0.220:2	./.	0/1:157,27:33:184:0.147:2	./.	./.
chr1	248814052	rs28533004	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:80,43:31:123:0.350:2	0/1:22,21:32:43:0.488:2	0/1:12,8:32:20:0.400:2	0/1:63,101:31:164:0.616:2	0/1:110,66:31:176:0.375:2	0/1:62,108:31:170:0.635:2	0/1:107,73:31:180:0.406:2	0/1:73,41:31:114:0.360:2	0/1:50,118:32:168:0.702:2	0/1:0,159:31:159:1.00:2	0/1:94,69:31:163:0.423:2
chr1	248814080	rs1782242	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:32:87:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,135:32:135:1.00:2	0/1:0,162:32:162:1.00:2	0/1:0,150:32:150:1.00:2	0/1:0,148:32:148:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,162:34:162:1.00:2	0/1:0,138:33:138:1.00:2	0/1:1,147:32:148:0.993:2
chr1	248814126	rs28418327	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,35:31:69:0.507:2	0/1:6,14:32:20:0.700:2	0/1:3,14:31:17:0.824:2	0/1:31,64:31:95:0.674:2	0/1:24,74:30:98:0.755:2	0/1:63,37:30:100:0.370:2	0/1:25,57:31:82:0.695:2	0/1:38,24:30:62:0.387:2	0/1:26,77:31:103:0.748:2	0/1:0,74:31:74:1.00:2	0/1:60,46:31:106:0.434:2
chr1	248844959	rs55871516	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,43:32:43:1.00:2	0/1:0,31:32:31:1.00:2	./.	0/1:31,23:32:54:0.426:2	./.	0/1:17,20:33:37:0.541:2	./.	0/1:28,22:33:50:0.440:2	./.	./.	./.
chr1	248845097	rs2000390	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,20:31:22:0.909:2	0/1:60,41:31:101:0.406:2	0/1:1,172:31:174:0.994:2	0/1:67,64:30:131:0.489:2	0/1:1,174:31:175:0.994:2	0/1:85,79:31:164:0.482:2	0/1:0,100:31:100:1.00:2	0/1:0,95:31:95:1.00:2	0/1:0,114:31:114:1.00:2
chr1	248845356	rs41311583	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:2,139:32:142:0.986:2	0/1:0,102:32:103:1.00:2	./.	0/1:98,100:31:199:0.505:2	./.	0/1:90,105:31:195:0.538:2	./.	0/1:82,113:31:195:0.579:2	./.	./.	./.
chr1	248845411	rs11485825	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,30:33:30:1.00:2	0/1:94,72:32:166:0.434:2	0/1:1,168:32:169:0.994:2	0/1:110,70:33:180:0.389:2	0/1:0,162:32:162:1.00:2	0/1:113,59:33:172:0.343:2	0/1:0,163:34:163:1.00:2	0/1:0,157:33:157:1.00:2	0/1:0,173:33:173:1.00:2
chr1	248845458	rs4509608	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,22:31:22:1.00:2	0/1:74,58:32:132:0.439:2	0/1:1,108:32:109:0.991:2	0/1:81,50:31:131:0.382:2	0/1:0,102:32:102:1.00:2	0/1:101,67:32:168:0.399:2	0/1:0,118:33:118:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,142:32:142:1.00:2
chr1	248845471	rs4575113	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,113:28:113:1.00:2	0/1:0,80:28:80:1.00:2	0/1:0,18:27:18:1.00:2	0/1:0,121:28:121:1.00:2	0/1:0,89:28:89:1.00:2	0/1:0,123:28:123:1.00:2	0/1:0,96:28:96:1.00:2	0/1:3,145:28:148:0.980:2	0/1:0,109:29:109:1.00:2	0/1:0,84:28:84:1.00:2	0/1:0,113:27:113:1.00:2
chr1	248845499	rs4462184	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:31:69:1.00:2	0/1:0,66:30:66:1.00:2	0/1:1,9:31:10:0.900:2	0/1:0,95:31:95:1.00:2	0/1:0,70:31:70:1.00:2	0/1:1,100:29:101:0.990:2	0/1:0,68:30:68:1.00:2	0/1:4,118:30:122:0.967:2	0/1:0,95:32:95:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,83:31:83:1.00:2
chr1	249142882	rs200208741	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,78:32:148:0.527:2	./.	./.	./.	./.	./.	./.	./.
chr1	249143646	rs2511	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:59,41:31:100:0.410:2	0/1:30,24:31:54:0.444:2	./.	0/1:56,47:30:103:0.456:2	./.	./.	./.	./.	./.	./.	./.
chr1	249144497	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:33:49:0.082:2
chr2	46043	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,3:33:42:0.071:2	./.	./.	./.	./.	./.	./.	./.
chr2	224919	rs2290911	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:107,57:33:164:0.348:2	0/1:47,55:33:103:0.539:2	./.	0/1:86,53:33:141:0.381:2	./.	./.	./.	0/1:80,54:32:134:0.403:2	0/1:66,65:33:131:0.496:2	./.	0/1:105,53:32:158:0.335:2
chr2	242793	rs62114506	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,12:33:28:0.429:2	./.	./.	./.	0/1:20,12:30:32:0.375:2	0/1:18,17:33:35:0.486:2	./.	0/1:19,5:32:24:0.208:2
chr2	242800	rs10181051	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:13,11:32:24:0.458:2	0/1:14,7:32:21:0.333:2	0/1:0,4:33:4:1.00:2	./.	0/1:0,18:32:18:1.00:2	./.	./.	0/1:13,16:33:29:0.552:2	0/1:19,19:34:38:0.500:2	0/1:0,23:33:23:1.00:2	./.
chr2	243504	rs7556816	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:30:11:1.00:2	./.	0/1:0,85:30:85:1.00:2	./.	./.	0/1:83,71:30:154:0.461:2	0/1:62,33:32:95:0.347:2	0/1:1,102:31:103:0.990:2	./.
chr2	264019	rs7595075	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,2:31:2:1.00:2	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	0/1:0,5:31:5:1.00:2	./.	./.
chr2	269352	rs6755722	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,3:31:20:0.150:2	./.	0/1:0,42:32:42:1.00:2	./.	./.	0/1:59,42:32:101:0.416:2	0/1:73,53:33:126:0.421:2	0/1:3,67:32:70:0.957:2	./.
chr2	272203	rs11553746	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:78,79:31:158:0.503:2	0/1:73,50:31:123:0.407:2	./.	0/1:98,85:29:184:0.464:2	./.	./.	./.	0/1:103,86:29:189:0.455:2	0/1:87,81:31:168:0.482:2	./.	0/1:85,86:30:171:0.503:2
chr2	277003	rs79716074	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:34,16:29:50:0.320:2	0/1:17,10:28:27:0.370:2	./.	0/1:24,30:31:54:0.556:2	./.	./.	./.	0/1:16,14:29:30:0.467:2	0/1:30,34:31:64:0.531:2	./.	0/1:32,43:29:75:0.573:2
chr2	277314	rs77927634	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,45:31:117:0.385:2	./.	./.	./.	./.	./.	./.	./.
chr2	672826	rs149085075	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,50:31:97:0.515:2	./.	./.	./.
chr2	676177	rs2293083	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:32:36:1.00:2	0/1:0,16:30:16:1.00:2	0/1:5,6:32:11:0.545:2	0/1:0,53:32:53:1.00:2	./.	./.	0/1:0,50:32:50:1.00:2	./.	0/1:0,53:33:53:1.00:2	0/1:0,28:31:28:1.00:2	0/1:16,21:32:37:0.568:2
chr2	677295	rs3210390	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,26:29:38:0.684:2	0/1:0,30:28:30:1.00:2	./.	0/1:17,23:28:40:0.575:2	./.	./.	./.
chr2	905393	rs113854668	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,5:26:38:0.132:2	0/1:19,4:27:23:0.174:2	./.	0/1:13,16:30:29:0.552:2	0/1:38,8:29:46:0.174:2	./.	0/1:45,9:31:54:0.167:2	0/1:47,12:30:59:0.203:2	0/1:16,10:33:26:0.385:2	0/1:33,5:26:38:0.132:2	0/1:21,15:33:38:0.417:2
chr2	905399	rs111252196	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,10:32:27:0.370:2	./.	./.	./.	./.	0/1:15,6:33:21:0.286:2	./.	0/1:22,8:29:30:0.267:2
chr2	905427	rs113411033	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,5:29:29:0.172:2	./.	./.	./.	./.	./.	./.	0/1:16,3:34:19:0.158:2
chr2	905428	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,4:26:50:0.080:2	./.	./.	./.	./.	./.	./.
chr2	905442	rs62103942	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,4:29:25:0.160:2	0/1:42,5:26:47:0.106:2	./.	0/1:40,5:30:45:0.111:2	0/1:37,9:30:46:0.196:2	./.	./.	0/1:12,4:29:17:0.250:2
chr2	905483	rs113678061	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,4:28:68:0.059:2	./.	0/1:47,6:32:53:0.113:2	./.	./.	./.	./.
chr2	905492	rs62103943	T	G,A	.	PASS	AC=2,1;AF=0.222,0.111;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant11	GT:BQ:DP:FA:SS	./.	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	0/1:26:21:0.278:2	./.	./.	./.	0/2:29:24:0.300:2	./.	./.	0/1:26:13:0.308:2	./.	./.
chr2	905494	.	C	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:41,17:26:58:0.293:2	0/1:19,3:30:22:0.136:2	./.	0/1:32,10:27:42:0.238:2	0/1:50,20:23:70:0.286:2	0/1:18,6:25:24:0.250:2	0/1:52,13:26:65:0.200:2	0/1:45,20:27:65:0.308:2	./.	0/1:33,12:27:46:0.267:2	./.
chr2	905495	.	C	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,14:28:56:0.250:2	0/1:20,3:29:23:0.130:2	./.	0/1:33,10:25:43:0.233:2	0/1:50,21:25:71:0.296:2	0/1:18,5:27:23:0.217:2	0/1:54,11:25:65:0.169:2	0/1:49,20:27:69:0.290:2	./.	0/1:35,12:27:47:0.255:2	./.
chr2	905497	rs111536265	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:48,12:27:60:0.200:2	0/1:21,4:30:25:0.160:2	./.	0/1:31,13:31:44:0.295:2	0/1:61,16:28:77:0.208:2	0/1:19,5:28:24:0.208:2	0/1:57,10:29:67:0.149:2	0/1:67,8:28:75:0.107:2	0/1:10,4:30:14:0.286:2	0/1:42,6:30:48:0.125:2	0/1:15,9:25:24:0.375:2
chr2	905525	rs111963287	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:58,9:30:67:0.134:2	0/1:28,6:32:34:0.176:2	./.	0/1:52,10:30:62:0.161:2	0/1:73,8:29:81:0.099:2	0/1:29,4:28:33:0.121:2	0/1:75,5:30:80:0.063:2	0/1:77,9:30:86:0.105:2	./.	0/1:37,12:33:49:0.245:2	0/1:15,4:28:19:0.211:2
chr2	905533	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,5:32:64:0.078:2	0/1:74,7:30:81:0.086:2	./.	./.	0/1:85,5:33:90:0.056:2	./.	./.	./.
chr2	905534	rs13385144	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,6:30:30:0.200:2	./.	0/1:84,7:34:91:0.077:2	./.	./.	./.
chr2	905536	rs200026353	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,5:30:30:0.167:2	./.	./.	./.	./.	./.
chr2	905553	rs12464357	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,9:29:85:0.106:2	./.	0/1:36,4:29:40:0.100:2	./.
chr2	905567	rs112481627	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:45,6:28:51:0.118:2	./.	./.	0/1:41,5:28:46:0.109:2	0/1:53,5:26:58:0.086:2	0/1:17,5:30:22:0.227:2	./.	0/1:59,9:30:68:0.132:2	./.	0/1:26,3:33:29:0.103:2	./.
chr2	905575	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,4:33:54:0.074:2	./.	./.	./.	./.	./.	./.
chr2	905576	rs12470098	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,10:27:46:0.227:2	0/1:18,9:24:28:0.333:2	./.	0/1:31,9:26:40:0.225:2	0/1:32,18:27:52:0.360:2	0/1:11,7:28:18:0.389:2	0/1:40,14:26:55:0.259:2	0/1:45,13:26:61:0.224:2	0/1:4,3:31:8:0.429:2	./.	0/1:5,3:27:8:0.375:2
chr2	905581	rs113738897	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,27:30:44:0.614:2	0/1:18,10:25:28:0.357:2	./.	0/1:20,23:27:43:0.535:2	0/1:29,21:27:50:0.420:2	0/1:16,4:29:20:0.200:2	0/1:21,32:27:53:0.604:2	0/1:36,32:28:68:0.471:2	0/1:6,3:33:9:0.333:2	0/1:11,16:31:27:0.593:2	./.
chr2	905595	rs28716017	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,6:28:48:0.125:2	./.	./.	0/1:34,5:27:39:0.128:2	0/1:39,4:32:43:0.093:2	0/1:16,3:28:19:0.158:2	0/1:43,7:33:50:0.140:2	0/1:65,4:34:69:0.058:2	./.	./.	./.
chr2	905620	rs200190444	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:27:44:0.091:2	./.	./.	./.
chr2	905634	rs13400348	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,19:30:28:0.679:2	0/1:3,7:32:10:0.700:2	./.	0/1:4,13:32:17:0.765:2	0/1:4,10:32:14:0.714:2	0/1:2,3:34:5:0.600:2	0/1:5,13:32:18:0.722:2	0/1:5,23:31:28:0.821:2	0/1:1,4:30:5:0.800:2	0/1:2,4:31:6:0.667:2	./.
chr2	905637	rs200485054	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,3:32:22:0.136:2	./.	./.	./.	./.
chr2	905651	rs113734895	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:24,3:30:27:0.111:2	./.	./.	./.	./.	./.	./.	0/1:35,4:32:39:0.103:2	./.	./.	./.
chr2	905660	rs112574570	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,3:33:47:0.064:2	./.	./.	./.
chr2	905679	rs112299659	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:29,8:26:37:0.216:2	0/1:19,3:31:22:0.136:2	./.	./.	./.	./.	./.	0/1:42,5:31:47:0.106:2	./.	./.	./.
chr2	905687	rs13395348	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,32:30:33:0.970:2	0/1:0,21:30:21:1.00:2	./.	0/1:2,16:31:18:0.889:2	0/1:0,25:30:25:1.00:2	0/1:0,7:29:7:1.00:2	0/1:2,29:30:31:0.935:2	0/1:1,41:31:42:0.976:2	0/1:1,4:28:5:0.800:2	0/1:4,9:31:13:0.692:2	0/1:1,3:31:4:0.750:2
chr2	905693	rs74861779	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,7:29:23:0.304:2	./.	./.	./.	0/1:50,8:32:58:0.138:2	0/1:4,3:27:7:0.429:2	./.	./.
chr2	905721	rs71337695	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,3:33:58:0.052:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	905736	rs11891241	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,38:29:62:0.623:2	0/1:15,16:30:31:0.516:2	./.	0/1:19,28:29:47:0.596:2	0/1:22,38:29:61:0.633:2	0/1:8,14:28:22:0.636:2	0/1:32,51:29:83:0.614:2	0/1:41,36:29:77:0.468:2	0/1:2,6:29:8:0.750:2	0/1:17,9:30:26:0.346:2	0/1:7,7:27:14:0.500:2
chr2	905763	rs71337696	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,23:28:66:0.348:2	0/1:30,9:25:39:0.231:2	./.	0/1:43,12:28:56:0.218:2	0/1:67,13:29:80:0.163:2	0/1:17,9:28:26:0.346:2	0/1:69,20:23:89:0.225:2	0/1:60,10:24:70:0.143:2	./.	./.	./.
chr2	905777	rs71337697	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:57,8:26:65:0.123:2	0/1:31,6:23:37:0.162:2	./.	0/1:48,8:30:56:0.143:2	0/1:62,9:32:71:0.127:2	0/1:18,7:30:25:0.280:2	0/1:85,8:31:93:0.086:2	0/1:63,5:27:68:0.074:2	./.	./.	0/1:12,5:21:17:0.294:2
chr2	905785	rs111308021	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,7:31:71:0.099:2	./.	./.	./.	./.	./.	./.
chr2	905786	rs111964853	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:48,9:31:59:0.158:2	./.	./.	0/1:46,4:27:51:0.080:2	0/1:58,7:31:65:0.108:2	0/1:19,3:31:22:0.136:2	0/1:72,11:31:83:0.133:2	0/1:43,11:31:54:0.204:2	./.	./.	./.
chr2	905788	rs368624435	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:47,10:28:57:0.175:2	0/1:22,5:22:27:0.185:2	./.	./.	0/1:55,7:30:63:0.113:2	0/1:19,3:31:23:0.136:2	0/1:66,13:27:80:0.165:2	0/1:38,11:30:49:0.224:2	./.	./.	./.
chr2	905789	.	C	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:48,9:27:57:0.158:2	./.	./.	./.	0/1:56,7:29:63:0.111:2	0/1:20,3:31:23:0.130:2	0/1:70,11:28:81:0.136:2	0/1:38,11:29:49:0.224:2	./.	./.	./.
chr2	905802	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,6:23:48:0.125:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	905805	rs111612803	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:40,6:25:46:0.130:2	./.	./.	./.	0/1:47,5:28:52:0.096:2	./.	0/1:55,6:19:61:0.098:2	./.	./.	./.	./.
chr2	905819	rs13403699	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,7:31:40:0.175:2	./.	./.	0/1:31,7:31:38:0.184:2	0/1:38,4:29:42:0.095:2	./.	0/1:40,5:26:45:0.111:2	./.	./.	./.	./.
chr2	905827	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,3:32:39:0.077:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	905837	rs369032091	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,3:29:16:0.188:2
chr2	905844	rs6711032	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,8:33:24:0.333:2	0/1:6,6:32:12:0.500:2	./.	0/1:14,10:29:24:0.417:2	0/1:7,20:30:27:0.741:2	0/1:6,21:31:27:0.778:2	0/1:23,8:31:31:0.258:2	0/1:9,20:31:29:0.690:2	0/1:11,9:33:20:0.450:2	0/1:10,3:34:13:0.231:2	0/1:5,10:32:15:0.667:2
chr2	905872	.	G	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:15,6:29:21:0.286:2	./.	./.	0/1:19,4:29:23:0.174:2	./.	./.	0/1:21,4:26:25:0.160:2	0/1:24,4:25:28:0.143:2	./.	./.	./.
chr2	905873	.	G	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:16,6:31:22:0.273:2	./.	./.	0/1:21,4:32:25:0.160:2	./.	./.	0/1:20,4:26:24:0.167:2	0/1:25,3:32:28:0.107:2	./.	./.	./.
chr2	905889	rs62103945	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,11:28:29:0.379:2	./.	./.	0/1:26,9:32:35:0.257:2	0/1:24,5:30:29:0.172:2	0/1:31,3:32:34:0.088:2	0/1:21,10:31:31:0.323:2	0/1:26,8:31:34:0.235:2	./.	0/1:0,12:32:13:1.00:2	0/1:9,7:30:16:0.438:2
chr2	905914	rs62103946	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,7:30:36:0.194:2	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:26:38:0.105:2	./.	0/1:11,6:29:17:0.353:2
chr2	905931	rs10167633	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,9:30:26:0.346:2	0/1:13,9:29:22:0.409:2
chr2	905945	rs10184596	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,4:33:35:0.114:2	./.	./.	./.	./.	0/1:20,14:32:34:0.412:2	0/1:11,18:32:29:0.621:2
chr2	905956	rs10177046	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,16:32:47:0.340:2	0/1:23,20:32:43:0.465:2	0/1:15,25:31:40:0.625:2
chr2	905967	rs6711173	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,52:33:52:1.00:2	0/1:0,31:32:31:1.00:2	./.	0/1:65,28:34:93:0.301:2	0/1:0,52:32:52:1.00:2	0/1:2,68:32:70:0.971:2	0/1:0,79:33:79:1.00:2	0/1:0,57:32:57:1.00:2	./.	0/1:29,28:32:57:0.491:2	./.
chr2	1079280	rs142024310	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:29:11:0.727:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	1079320	rs4971432	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,43:31:78:0.551:2	0/1:20,20:32:40:0.500:2	0/1:0,8:29:8:1.00:2	0/1:0,84:31:85:1.00:2	0/1:1,49:31:50:0.980:2	0/1:46,41:30:87:0.471:2	0/1:1,56:31:57:0.982:2	0/1:36,52:31:88:0.591:2	0/1:38,37:32:75:0.493:2	0/1:0,54:32:54:1.00:2	0/1:1,65:31:66:0.985:2
chr2	1099077	rs4971440	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	./.
chr2	1133367	rs79642551	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:99,80:31:179:0.447:2	./.	0/1:99,71:32:170:0.418:2	./.	0/1:103,75:33:179:0.421:2	0/1:1,174:32:175:0.994:2	0/1:108,74:32:182:0.407:2
chr2	1161257	rs199527480	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,4:29:74:0.054:2	./.	./.	./.	./.	./.	./.	./.
chr2	1168781	rs28505970	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:25,26:29:51:0.510:2	0/1:17,6:30:23:0.261:2	./.	./.	0/1:30,31:28:61:0.508:2	./.	./.	0/1:40,39:29:79:0.494:2	./.	./.	0/1:37,33:29:70:0.471:2
chr2	1204796	rs6751090	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:19,18:32:37:0.486:2	0/1:10,9:32:19:0.474:2	./.	./.	./.	./.	./.	0/1:35,35:31:70:0.500:2	./.	./.	0/1:38,27:31:65:0.415:2
chr2	1271230	rs13023962	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:54,42:29:96:0.438:2	0/1:37,32:28:69:0.464:2	./.	0/1:83,60:29:143:0.420:2	0/1:71,57:30:128:0.445:2	0/1:75,62:29:137:0.453:2	0/1:81,74:28:155:0.477:2	0/1:0,149:29:149:1.00:2	0/1:78,52:30:130:0.400:2	0/1:67,55:29:122:0.451:2	0/1:0,131:29:131:1.00:2
chr2	1320143	rs4927635	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,22:32:22:1.00:2	0/1:29,25:32:54:0.463:2	0/1:0,64:31:64:1.00:2	0/1:22,14:32:36:0.389:2	0/1:2,63:32:65:0.969:2	0/1:36,30:32:66:0.455:2	./.	0/1:33,26:32:59:0.441:2
chr2	1418192	rs9678281	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,13:33:21:0.619:2	0/1:52,50:33:102:0.490:2	0/1:50,35:32:85:0.412:2	0/1:65,49:31:114:0.430:2	0/1:55,63:33:118:0.534:2	0/1:79,57:32:136:0.419:2	./.	0/1:46,34:31:80:0.425:2	0/1:0,92:33:92:1.00:2
chr2	1460004	rs4927611	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,22:31:69:0.319:2	0/1:2,72:31:74:0.973:2	0/1:46,32:31:78:0.410:2	0/1:34,31:31:65:0.477:2	0/1:33,26:31:59:0.441:2	0/1:32,35:31:67:0.522:2
chr2	1497657	rs10189135	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,40:32:113:0.354:2	./.	./.	./.
chr2	1497803	rs1126797	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:30,30:32:60:0.500:2	0/1:25,14:32:39:0.359:2	./.	./.	0/1:60,30:31:90:0.333:2	0/1:39,40:30:79:0.506:2	./.	./.	0/1:40,45:32:85:0.529:2	0/1:37,33:31:70:0.471:2	./.
chr2	1499870	rs13431173	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,26:30:77:0.338:2	./.	./.	./.
chr2	1499899	rs732608	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,19:33:42:0.452:2	0/1:14,13:33:27:0.481:2	./.	./.	0/1:22,28:32:50:0.560:2	0/1:29,18:32:47:0.383:2	0/1:30,39:32:69:0.565:2	./.	0/1:34,39:33:73:0.534:2	0/1:16,29:33:45:0.644:2	0/1:31,20:33:51:0.392:2
chr2	1499927	rs732609	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,21:33:40:0.525:2	0/1:13,9:31:22:0.409:2	./.	./.	0/1:25,27:32:53:0.519:2	0/1:24,21:31:45:0.467:2	0/1:29,37:31:66:0.561:2	0/1:31,25:32:56:0.446:2	0/1:33,34:34:67:0.507:2	0/1:14,31:33:45:0.689:2	0/1:27,19:30:46:0.413:2
chr2	1500437	rs13429240	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,81:31:190:0.426:2	./.	./.	./.
chr2	1507560	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,23:29:61:0.377:2	./.	./.	./.	./.	./.
chr2	1507598	rs28912994	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:30:11:0.727:2	./.	./.	./.	0/1:17,25:30:42:0.595:2	./.	./.	./.	./.
chr2	1520676	rs1126799	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,38:28:38:1.00:2	0/1:0,23:30:23:1.00:2	./.	0/1:33,30:29:63:0.476:2	0/1:2,45:29:47:0.957:2	0/1:30,17:29:47:0.362:2	./.	0/1:25,21:31:46:0.457:2	0/1:28,21:31:49:0.429:2	0/1:33,22:29:55:0.400:2	0/1:25,19:28:44:0.432:2
chr2	1544539	rs28915676	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,9:32:19:0.474:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	1544617	rs12615819	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,3:31:20:0.150:2	./.	0/1:83,53:31:136:0.390:2	0/1:100,73:31:173:0.422:2	./.	0/1:109,70:32:179:0.391:2	0/1:105,75:32:180:0.417:2	./.	0/1:98,79:32:177:0.446:2
chr2	1546327	rs1042589	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,74:30:74:1.00:2	./.	./.	0/1:1,59:29:60:0.983:2	0/1:51,37:31:88:0.420:2	0/1:51,40:31:91:0.440:2	0/1:52,31:29:83:0.373:2	./.
chr2	1642700	rs61747875	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,43:31:98:0.439:2	0/1:44,15:31:59:0.254:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	1642736	rs61747868	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,34:32:76:0.447:2	0/1:37,14:32:51:0.275:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	1647171	rs6730800	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:32:42:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,44:30:44:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,17:32:17:1.00:2
chr2	1652660	rs3811613	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,6:29:12:0.500:2	0/1:3,3:31:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	1652822	rs1863135	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:27:73:1.00:2	0/1:0,25:26:25:1.00:2	0/1:0,12:29:12:1.00:2	0/1:0,113:28:113:1.00:2	0/1:0,163:28:163:1.00:2	0/1:0,126:29:126:1.00:2	0/1:0,148:28:148:1.00:2	0/1:0,134:28:134:1.00:2	0/1:0,95:29:95:1.00:2	0/1:0,75:28:75:1.00:2	0/1:0,61:28:61:1.00:2
chr2	1664654	rs17841813	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,9:26:22:0.409:2	0/1:15,6:26:21:0.286:2	0/1:0,8:28:8:1.00:2	0/1:16,18:28:34:0.529:2	0/1:19,20:27:39:0.513:2	0/1:0,31:29:31:1.00:2	0/1:1,45:28:46:0.978:2	0/1:33,27:27:60:0.450:2	0/1:16,16:29:33:0.500:2	./.	0/1:0,33:28:33:1.00:2
chr2	1842968	rs6728368	T	A,C	.	PASS	AC=1,5;AF=0.056,0.278;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	0/2:30:41:1.00:2	0/2:31:30:1.00:2	./.	./.	./.	0/2:30:68:0.309:2	0/2:30:68:0.338:2	0/2:31:71:0.507:2	./.	0/1:30:54:1.00:2	./.
chr2	1843079	rs200125635	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,45:31:80:0.563:2	./.	./.	./.
chr2	1893049	rs71442304	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,39:32:88:0.443:2	./.
chr2	1893133	rs75247762	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,21:31:55:0.382:2
chr2	1926437	rs1529667	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,109:33:109:1.00:2	0/1:0,51:33:51:1.00:2	0/1:0,20:33:20:1.00:2	0/1:67,61:32:129:0.477:2	0/1:0,144:32:144:1.00:2	0/1:0,127:32:127:1.00:2	0/1:0,109:32:109:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,108:33:108:1.00:2	0/1:0,82:33:82:1.00:2	0/1:0,104:33:104:1.00:2
chr2	1926488	rs13399855	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,16:32:27:0.593:2	./.	./.	./.	./.	./.	./.	0/1:75,60:31:135:0.444:2	./.
chr2	1946914	rs3748988	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:105,56:27:161:0.348:2	0/1:47,55:29:103:0.539:2	0/1:10,10:27:20:0.500:2	./.	./.	0/1:89,57:28:148:0.390:2	./.	0/1:95,59:28:155:0.383:2	./.	0/1:0,149:28:149:1.00:2	0/1:69,72:27:143:0.511:2
chr2	1946968	rs3748989	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,77:32:186:0.414:2	0/1:49,61:32:110:0.555:2	./.	./.	./.	0/1:89,99:31:188:0.527:2	./.	./.	./.	./.	./.
chr2	3212481	rs17327576	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,46:29:121:0.380:2	0/1:68,66:29:134:0.493:2	./.	./.	./.	./.	./.
chr2	3212704	rs7595702	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,20:30:44:0.455:2	0/1:0,53:31:53:1.00:2	./.	0/1:32,22:32:54:0.407:2	./.	0/1:13,24:32:37:0.649:2	0/1:37,23:32:60:0.383:2
chr2	3212712	rs28705690	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,21:28:32:0.656:2	0/1:11,13:28:24:0.542:2	./.	./.	./.	./.	./.	./.	0/1:20,22:30:42:0.524:2	./.	0/1:24,33:29:57:0.579:2
chr2	3261095	rs201697774	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,64:30:161:0.398:2	./.	./.	./.	./.	./.	./.
chr2	3261173	rs10188932	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,56:32:114:0.491:2	0/1:30,24:32:54:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,67:32:146:0.459:2
chr2	3322700	rs75927199	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,28:31:81:0.346:2	./.	./.	./.	./.	./.	0/1:32,32:31:64:0.500:2	./.
chr2	3356995	rs62119517	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,20:31:50:0.400:2	0/1:71,63:32:134:0.470:2	./.	0/1:60,56:32:116:0.483:2	./.	./.	./.
chr2	3392037	rs200331319	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,11:19:72:0.153:2	./.	./.	./.	./.	./.
chr2	3392075	rs10865541	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,5:33:15:0.333:2	0/1:0,83:32:83:1.00:2	0/1:60,46:31:106:0.434:2	0/1:39,51:32:90:0.567:2	0/1:1,71:32:72:0.986:2	0/1:73,69:32:142:0.486:2	0/1:44,32:31:76:0.421:2	0/1:0,48:32:48:1.00:2	./.
chr2	3392290	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:32:42:0.095:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	3392295	rs11686212	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,47:32:53:0.887:2	0/1:53,46:31:99:0.465:2	./.	0/1:0,40:33:40:1.00:2	./.	0/1:37,19:31:56:0.339:2	0/1:0,29:33:29:1.00:2	./.
chr2	3425423	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,11:22:137:0.080:2
chr2	3425514	rs7558487	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,17:32:30:0.567:2	0/1:1,160:32:161:0.994:2	0/1:80,81:32:162:0.503:2	0/1:94,71:32:165:0.430:2	0/1:1,183:32:184:0.995:2	0/1:1,157:32:158:0.994:2	0/1:63,66:33:129:0.512:2	0/1:0,121:32:121:1.00:2	./.
chr2	3425729	rs1132171	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,56:29:130:0.431:2	./.	./.	./.	./.
chr2	3469463	rs4971514	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,13:33:31:0.419:2	0/1:13,13:33:26:0.500:2	./.	0/1:42,15:32:57:0.263:2	0/1:34,25:32:59:0.424:2	0/1:34,25:32:59:0.424:2	0/1:12,16:32:28:0.571:2	./.	0/1:37,36:33:73:0.493:2	0/1:0,40:33:40:1.00:2	0/1:43,38:32:81:0.469:2
chr2	3470115	rs7593516	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:86,71:29:157:0.452:2	0/1:58,58:29:116:0.500:2	./.	0/1:92,95:30:187:0.508:2	./.	0/1:93,94:30:188:0.503:2	0/1:3,181:29:184:0.984:2	./.	./.	0/1:0,172:29:172:1.00:2	0/1:97,67:28:164:0.409:2
chr2	3470124	rs7574517	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:89,75:32:164:0.457:2	0/1:58,63:32:121:0.521:2	./.	0/1:84,94:32:178:0.528:2	0/1:191,4:34:196:0.021:2	0/1:100,90:32:190:0.474:2	0/1:2,182:32:184:0.989:2	./.	./.	0/1:0,172:32:172:1.00:2	0/1:92,74:33:167:0.446:2
chr2	3481531	rs11548215	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,53:29:125:0.424:2	./.	0/1:83,54:29:137:0.394:2	./.	./.	0/1:112,75:29:187:0.401:2
chr2	3483181	rs13986	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:89,51:32:140:0.364:2	0/1:35,29:31:64:0.453:2	./.	0/1:91,56:31:147:0.381:2	0/1:109,76:31:185:0.411:2	./.	0/1:94,81:31:175:0.463:2	./.	./.	./.	0/1:62,57:31:119:0.479:2
chr2	3483205	rs6767	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:68,48:30:117:0.414:2	0/1:36,27:29:63:0.429:2	./.	0/1:82,52:30:134:0.388:2	0/1:84,62:30:146:0.425:2	0/1:83,66:29:150:0.443:2	0/1:2,144:29:146:0.986:2	./.	0/1:71,54:31:125:0.432:2	0/1:0,100:30:100:1.00:2	0/1:56,55:30:111:0.495:2
chr2	3488502	rs9752130	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:110,76:30:186:0.409:2	0/1:56,58:29:114:0.509:2	./.	0/1:101,93:30:194:0.479:2	0/1:103,78:30:181:0.431:2	0/1:110,79:30:189:0.418:2	0/1:0,176:30:176:1.00:2	./.	0/1:117,74:30:191:0.387:2	0/1:0,179:29:179:1.00:2	0/1:104,68:29:172:0.395:2
chr2	3504481	rs191945648	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,11:30:15:0.733:2
chr2	3504548	rs116562960	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,25:27:50:0.500:2	./.	./.
chr2	3504615	rs149600945	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,47:27:107:0.439:2	./.	./.
chr2	3504687	rs9950	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,54:30:92:0.587:2	0/1:39,33:30:72:0.458:2	./.	./.	./.	0/1:71,87:29:158:0.551:2	0/1:97,85:30:182:0.467:2	./.	./.	0/1:0,126:29:126:1.00:2	0/1:67,49:28:116:0.422:2
chr2	3518643	rs7566663	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,9:27:24:0.391:2	0/1:3,4:26:7:0.571:2	./.	./.	./.	0/1:12,7:27:19:0.368:2	0/1:6,10:26:16:0.625:2	./.	0/1:15,10:27:25:0.400:2	0/1:17,4:28:21:0.190:2	0/1:9,14:27:23:0.609:2
chr2	3597974	rs10186193	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,4:30:16:0.250:2	./.	0/1:12,6:29:18:0.333:2	0/1:1,26:30:27:0.963:2	0/1:0,12:26:12:1.00:2	0/1:10,21:29:31:0.677:2	./.	0/1:23,6:29:29:0.207:2
chr2	3604417	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:31:133:0.030:2
chr2	3605468	rs12711976	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,17:31:17:1.00:2	0/1:2,114:32:116:0.983:2	0/1:1,94:31:95:0.989:2	0/1:57,59:32:116:0.509:2	0/1:60,37:32:97:0.381:2	0/1:0,121:32:121:1.00:2	0/1:0,115:32:115:1.00:2	0/1:61,48:31:109:0.440:2	0/1:1,118:31:120:0.992:2
chr2	3624171	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:31:148:0.027:2	./.	./.	./.	./.
chr2	3628383	rs2071639	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,18:31:29:0.621:2	./.	0/1:23,8:30:31:0.258:2	./.	0/1:0,26:30:26:1.00:2	./.	./.	0/1:39,13:31:52:0.250:2
chr2	3652616	rs3769507	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,36:32:38:0.947:2	0/1:0,40:32:40:1.00:2	0/1:0,14:32:14:1.00:2	0/1:1,57:33:58:0.983:2	0/1:0,35:31:35:1.00:2	0/1:44,31:32:75:0.413:2	0/1:31,30:32:61:0.492:2	0/1:0,67:32:67:1.00:2	0/1:34,38:32:72:0.528:2	./.	0/1:60,37:31:97:0.381:2
chr2	3653842	rs72767191	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.	./.	0/1:30,33:29:63:0.524:2	./.	./.	./.	./.	./.
chr2	3653844	rs3739147	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,43:27:45:0.956:2	0/1:0,17:26:17:1.00:2	0/1:0,7:29:7:1.00:2	0/1:1,39:28:40:0.975:2	0/1:0,41:26:41:1.00:2	0/1:28,33:26:61:0.541:2	0/1:28,17:27:45:0.378:2	0/1:0,46:27:46:1.00:2	0/1:36,17:25:53:0.321:2	./.	0/1:32,17:26:49:0.347:2
chr2	3673609	rs76490827	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,21:27:45:0.467:2	./.	./.	./.	./.	./.	./.
chr2	3673648	rs10170348	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,36:32:96:0.375:2	./.	./.	./.	0/1:57,28:31:85:0.329:2
chr2	3685163	rs34347618	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,73:33:168:0.437:2	./.	./.	./.	./.	./.	./.
chr2	3688861	rs144276483	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:113,60:32:174:0.347:2	./.	./.	./.	./.	./.	./.
chr2	3691071	rs34436491	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,70:33:138:0.507:2	./.	./.
chr2	3691548	rs7567833	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,45:30:127:0.354:2	./.	./.	./.	0/1:44,45:30:89:0.506:2	./.	./.
chr2	3721729	rs12105179	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:33:70:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,7:32:7:1.00:2	0/1:39,24:32:63:0.381:2	0/1:2,25:33:27:0.926:2	./.	0/1:2,27:32:29:0.931:2	./.	0/1:34,23:33:57:0.404:2	0/1:0,45:31:45:1.00:2	0/1:49,50:30:99:0.505:2
chr2	3726083	rs115017990	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:34:16:0.563:2	./.	./.	./.	./.	./.	./.	./.	0/1:56,72:33:128:0.563:2
chr2	3729254	rs13426642	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,16:30:32:0.500:2	./.	./.	./.	./.	0/1:25,14:32:39:0.359:2	./.
chr2	3800383	rs357969	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:93,72:32:165:0.436:2	0/1:64,62:32:126:0.492:2	./.	./.	0/1:0,87:31:87:1.00:2	./.	0/1:75,71:31:146:0.486:2	0/1:5,141:31:147:0.966:2	./.	./.	./.
chr2	3815444	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,6:32:88:0.068:2	./.	./.	./.	./.	./.
chr2	3826387	rs13021385	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,20:32:63:0.317:2	0/1:30,20:31:50:0.400:2	0/1:41,32:31:73:0.438:2	./.	0/1:29,28:31:57:0.491:2	./.	./.	./.
chr2	5834493	rs114244809	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,44:29:107:0.411:2	0/1:57,50:29:107:0.467:2	./.	./.
chr2	5836420	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,38:28:78:0.487:2	0/1:26,11:30:37:0.297:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	5838030	rs4371338	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:30,19:30:49:0.388:2	0/1:25,7:32:32:0.219:2	0/1:3,4:28:7:0.571:2	./.	0/1:28,22:30:51:0.440:2	0/1:30,29:31:59:0.492:2	./.	./.	./.	0/1:37,24:31:61:0.393:2	0/1:0,74:32:74:1.00:2
chr2	5838210	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,14:30:24:0.583:2
chr2	5838462	rs186254244	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,36:31:72:0.500:2
chr2	5839686	rs13419910	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:40,33:33:73:0.452:2	0/1:25,8:33:33:0.242:2	0/1:0,3:31:3:1.00:2	./.	0/1:18,19:33:37:0.514:2	0/1:29,23:33:52:0.442:2	./.	./.	./.	0/1:21,25:32:46:0.543:2	0/1:0,85:34:86:1.00:2
chr2	5839811	rs66465560	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,6:30:15:0.400:2	./.
chr2	5840014	rs56096754	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,3:32:21:0.143:2	./.	./.	./.	./.	./.	./.
chr2	5840143	rs75529147	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,10:31:24:0.417:2	./.	./.	./.	./.	./.	./.
chr2	5840461	rs6729137	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,17:29:43:0.395:2	./.
chr2	5840567	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:29:10:0.300:2	./.
chr2	5841141	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:32:86:0.047:2	./.	./.	./.	./.	./.
chr2	5841232	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:33:118:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	6990020	rs10495545	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,20:33:49:0.408:2	./.	./.	./.	./.	./.	./.
chr2	7005369	rs11678810	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	0/1:0,3:34:3:1.00:2	./.	./.	./.	./.	./.
chr2	7027244	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:33:131:0.031:2
chr2	7137067	rs364891	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:34:7:1.00:2	0/1:4,76:33:80:0.950:2	0/1:1,58:32:59:0.983:2	0/1:0,51:32:51:1.00:2	./.	0/1:0,74:32:74:1.00:2	0/1:0,51:33:51:1.00:2	0/1:28,26:33:54:0.481:2	0/1:1,39:33:40:0.975:2
chr2	7154632	rs309325	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:29:62:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,65:30:65:1.00:2	0/1:0,61:30:61:1.00:2	0/1:0,76:30:76:1.00:2	0/1:0,77:30:77:1.00:2	0/1:0,121:29:121:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,95:29:95:1.00:2
chr2	7164578	rs376219	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:34:9:0.333:2	./.	0/1:55,45:32:100:0.450:2	0/1:37,39:34:77:0.513:2	./.	0/1:49,36:32:85:0.424:2	./.	0/1:37,37:33:74:0.500:2	./.
chr2	7208361	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:32:140:0.029:2	./.	./.	./.	./.
chr2	7208422	rs1869297	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,16:33:61:0.262:2	./.	./.	./.	0/1:38,42:32:80:0.525:2	./.	./.	./.
chr2	8871342	rs1044280	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,24:31:49:0.490:2	./.	./.	0/1:0,67:31:67:1.00:2	0/1:27,27:31:54:0.500:2	./.
chr2	8871880	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:30:107:0.037:2	./.	./.	./.
chr2	8877037	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:33:186:0.022:2
chr2	8877042	rs61742863	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,57:31:124:0.460:2	./.	0/1:83,80:31:163:0.491:2	./.	./.	./.	./.	./.
chr2	8936927	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:29:198:0.025:2	./.	./.	./.
chr2	9000769	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:33:138:0.029:2	./.	./.	./.
chr2	9013273	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:33:65:0.062:2	./.	./.
chr2	9491017	rs4669385	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:32:37:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,68:30:68:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,51:29:51:1.00:2
chr2	9514917	rs33930824	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,31:31:82:0.378:2	0/1:29,26:31:55:0.473:2	./.	0/1:54,60:30:114:0.526:2	0/1:65,43:29:108:0.398:2	./.	0/1:65,43:31:109:0.398:2	./.	./.	./.	./.
chr2	9519110	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:33:168:0.024:2	./.
chr2	9520874	rs11888409	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,40:31:89:0.449:2	./.	./.	./.
chr2	9528536	rs2715860	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:33:15:0.600:2	./.	0/1:77,91:33:168:0.542:2	./.	0/1:94,96:33:190:0.505:2	0/1:0,167:33:167:1.00:2	0/1:108,80:33:188:0.426:2	./.	0/1:0,174:32:174:1.00:2
chr2	9533774	rs6728908	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:29:5:1.00:2	./.	./.	./.
chr2	9547591	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,7:30:19:0.368:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	9588338	rs11890304	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,75:30:173:0.434:2	./.	./.	./.
chr2	9616161	rs61732203	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,102:32:190:0.537:2	./.	./.	./.	./.	0/1:102,63:32:165:0.382:2
chr2	9634856	rs1048610	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,74:31:162:0.457:2	0/1:34,32:30:66:0.485:2	0/1:9,6:30:15:0.400:2	0/1:109,73:31:182:0.401:2	0/1:2,121:30:123:0.984:2	./.	0/1:3,129:30:132:0.977:2	0/1:3,167:30:170:0.982:2	0/1:0,165:30:165:1.00:2	./.	0/1:102,79:29:181:0.436:2
chr2	9637331	rs56237316	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,91:29:176:0.517:2	./.	./.	./.	./.	./.	./.	./.
chr2	9683364	rs61754178	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,19:33:40:0.475:2	./.
chr2	9695682	rs144458353	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,25:32:57:0.439:2	./.	./.
chr2	9983686	rs2303914	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,6:28:19:0.316:2	0/1:7,14:30:21:0.667:2	0/1:5,7:31:12:0.583:2	0/1:0,22:30:22:1.00:2	0/1:1,5:32:6:0.833:2	0/1:1,18:28:19:0.947:2	0/1:6,5:28:11:0.455:2
chr2	9983704	rs144776624	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,3:29:8:0.375:2	./.	./.	./.	./.
chr2	9983716	rs385513	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,3:32:3:1.00:2	./.	0/1:0,7:31:7:1.00:2	./.	0/1:0,9:31:9:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,2:35:2:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,6:30:6:1.00:2
chr2	9991696	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:29:66:0.062:2	./.	./.	./.	./.
chr2	10008792	rs150737308	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:33:13:0.462:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	10045014	rs400917	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,13:31:32:0.406:2	0/1:17,5:31:22:0.227:2	0/1:0,2:31:2:1.00:2	0/1:0,31:31:31:1.00:2	0/1:11,11:31:22:0.500:2	0/1:0,15:28:15:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,26:31:26:1.00:2	0/1:2,27:30:29:0.931:2	0/1:35,15:32:50:0.300:2
chr2	10045024	rs396190	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:31:32:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,34:32:34:1.00:2	0/1:1,29:31:30:0.967:2	0/1:0,17:30:17:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,32:31:32:1.00:2	0/1:4,31:31:35:0.886:2	0/1:0,52:32:52:1.00:2
chr2	10045113	rs116114439	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,33:32:77:0.440:2	./.	./.
chr2	10050947	rs1054561	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,66:33:131:0.504:2	0/1:44,41:32:85:0.482:2	0/1:0,12:33:12:1.00:2	0/1:1,145:33:146:0.993:2	./.	0/1:0,154:32:155:1.00:2	0/1:75,50:32:125:0.400:2	./.	0/1:2,185:33:187:0.989:2	0/1:104,49:33:153:0.320:2	./.
chr2	10050960	rs1054565	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,72:33:142:0.507:2	0/1:48,43:32:92:0.473:2	0/1:0,16:32:16:1.00:2	0/1:1,168:33:170:0.994:2	./.	0/1:0,183:32:184:1.00:2	0/1:85,63:33:148:0.426:2	./.	0/1:1,185:34:186:0.995:2	0/1:122,55:33:177:0.311:2	./.
chr2	10059197	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:30:46:0.087:2	./.	./.	./.	./.
chr2	10059770	rs1820965	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,50:32:133:0.376:2	0/1:44,22:31:66:0.333:2	0/1:0,5:28:5:1.00:2	0/1:0,84:31:84:1.00:2	./.	0/1:0,87:31:87:1.00:2	0/1:39,23:30:62:0.371:2	./.	0/1:0,100:32:100:1.00:2	0/1:51,42:32:93:0.452:2	./.
chr2	10059844	rs16867245	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,53:31:129:0.411:2	./.	0/1:64,42:31:106:0.396:2	0/1:87,59:32:146:0.404:2	./.	./.	0/1:110,79:32:189:0.418:2
chr2	10091952	rs111645870	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,28:29:46:0.609:2	./.	0/1:18,20:29:38:0.526:2	./.	./.	./.
chr2	10092019	rs187290376	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:30:6:0.500:2	./.	0/1:0,5:30:5:1.00:2	./.	./.	./.
chr2	10095185	rs16867251	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,31:27:82:0.378:2	./.	0/1:53,47:30:100:0.470:2	0/1:50,42:29:92:0.457:2	./.	./.
chr2	10101468	rs16867256	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,15:32:33:0.455:2	./.	0/1:29,31:31:60:0.517:2	0/1:30,28:32:58:0.483:2	./.	./.
chr2	10126330	rs2303920	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,24:31:68:0.353:2	0/1:34,38:31:72:0.528:2	0/1:0,56:31:56:1.00:2	./.	./.	0/1:46,20:32:66:0.303:2
chr2	10186419	rs35927125	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,8:31:16:0.500:2	./.	./.	0/1:1,104:29:105:0.990:2	./.	./.	./.	./.	./.
chr2	10188649	rs11687357	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,31:31:31:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,5:33:5:1.00:2	./.	0/1:20,7:32:27:0.259:2	0/1:0,47:31:47:1.00:2	0/1:17,22:32:39:0.564:2	0/1:0,41:31:41:1.00:2	./.	0/1:0,26:30:26:1.00:2	0/1:0,30:30:30:1.00:2
chr2	10225289	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:34:93:0.043:2	./.	./.
chr2	10262859	rs72542787	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,40:28:67:0.597:2	./.
chr2	10262920	rs1130609	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,11:31:42:0.262:2	0/1:31,9:28:40:0.225:2	0/1:8,4:29:12:0.333:2	0/1:2,52:30:54:0.963:2	0/1:0,31:30:31:1.00:2	0/1:45,32:31:77:0.416:2	0/1:29,14:29:43:0.326:2	./.	0/1:21,24:31:45:0.533:2	0/1:0,40:29:40:1.00:2	0/1:0,18:29:18:1.00:2
chr2	10263566	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,8:14:28:0.286:2	./.	./.	./.	./.	./.
chr2	10350599	rs7423163	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,31:30:73:0.425:2	./.	./.	./.	0/1:35,40:29:75:0.533:2	./.	./.	./.
chr2	10560218	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:29:73:0.055:2	./.	./.	./.	./.
chr2	10563233	rs2270304	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,92:33:163:0.564:2	0/1:33,74:32:107:0.692:2	./.
chr2	10563236	rs55737425	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,60:30:113:0.531:2	0/1:34,30:30:64:0.469:2	0/1:12,12:30:24:0.500:2	0/1:0,128:30:128:1.00:2	./.	0/1:71,67:30:138:0.486:2	0/1:93,84:30:177:0.475:2	./.	./.	./.	0/1:0,109:30:109:1.00:2
chr2	10580912	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,4:32:54:0.074:2	./.	./.	./.	./.	./.	./.	./.
chr2	10580967	rs1049500	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:32:12:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	10581757	rs1804032	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:104,89:30:193:0.461:2	./.	./.	./.	./.	./.	./.
chr2	10582196	rs28362407	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,54:31:107:0.505:2	./.	./.	./.	./.	./.	./.
chr2	10584275	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:31:96:0.042:2	./.	./.	./.
chr2	10594161	rs201557363	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,81:30:181:0.448:2
chr2	10595578	rs6432097	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,68:32:132:0.515:2	./.	./.	./.	0/1:75,108:34:183:0.590:2	0/1:6,183:33:189:0.968:2	./.
chr2	10712278	rs3732114	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,90:31:176:0.511:2
chr2	10717806	rs2287059	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:68,56:31:124:0.452:2	0/1:35,26:31:61:0.426:2	0/1:8,7:31:15:0.467:2	./.	./.	./.	0/1:73,51:31:124:0.411:2	0/1:85,62:31:147:0.422:2	./.	./.	./.
chr2	10784491	rs3732111	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,45:33:127:0.354:2
chr2	10813677	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.
chr2	10908893	rs1198849	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,13:30:29:0.448:2	0/1:8,8:30:16:0.500:2	./.	0/1:19,17:29:36:0.472:2	0/1:0,21:28:21:1.00:2	./.	./.	./.	0/1:0,28:30:29:1.00:2	./.	0/1:24,12:30:36:0.333:2
chr2	10912719	rs72777388	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:35,27:32:62:0.435:2	0/1:24,16:32:40:0.400:2	0/1:0,12:30:12:1.00:2	./.	./.	./.	0/1:4,57:31:61:0.934:2	./.	./.	0/1:2,48:31:50:0.960:2	./.
chr2	10923353	rs17364812	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,68:28:177:0.384:2
chr2	10928906	rs1734432	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,17:32:23:0.739:2	0/1:13,7:31:20:0.350:2	./.	0/1:13,15:32:28:0.536:2	0/1:0,17:31:17:1.00:2	./.	0/1:0,24:31:24:1.00:2	./.	0/1:0,26:34:26:1.00:2	0/1:0,17:32:17:1.00:2	0/1:21,33:33:54:0.611:2
chr2	10929041	rs141048777	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,74:33:170:0.435:2	./.	./.	./.	./.
chr2	10930903	rs4807	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,60:33:93:0.645:2	0/1:0,81:32:81:1.00:2	./.	./.	./.	0/1:3,113:34:116:0.974:2	./.	./.
chr2	10933249	rs4799	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,31:31:66:0.470:2	0/1:32,33:32:65:0.508:2	0/1:0,13:31:13:1.00:2	0/1:70,73:30:143:0.510:2	0/1:2,83:30:85:0.976:2	./.	0/1:0,140:30:140:1.00:2	./.	0/1:1,125:31:126:0.992:2	0/1:1,95:30:96:0.990:2	./.
chr2	10942687	rs4758	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,38:32:85:0.447:2	0/1:32,25:32:57:0.439:2	0/1:0,7:31:7:1.00:2	0/1:73,42:32:115:0.365:2	0/1:1,61:32:62:0.984:2	./.	0/1:1,92:32:93:0.989:2	./.	0/1:1,115:33:116:0.991:2	0/1:4,95:32:99:0.960:2	0/1:62,75:32:137:0.547:2
chr2	10952790	rs6726687	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	0/1:0,2:30:2:1.00:2	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.
chr2	10959384	rs55770944	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:44,37:32:81:0.457:2	0/1:28,15:31:43:0.349:2	0/1:0,8:32:8:1.00:2	./.	./.	./.	0/1:0,30:32:30:1.00:2	./.	./.	0/1:0,58:31:58:1.00:2	./.
chr2	10959407	rs72779451	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:39,35:32:74:0.473:2	0/1:30,16:32:46:0.348:2	0/1:1,8:33:9:0.889:2	./.	./.	./.	0/1:0,24:33:24:1.00:2	./.	./.	0/1:1,50:32:51:0.980:2	./.
chr2	10959461	rs72779452	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:20,21:32:41:0.512:2	0/1:24,11:32:35:0.314:2	0/1:2,6:31:8:0.750:2	./.	./.	./.	0/1:1,16:31:17:0.941:2	./.	./.	0/1:1,26:32:27:0.963:2	./.
chr2	11053020	rs3732104	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	0/1:8,3:34:11:0.273:2	./.	0/1:9,3:30:12:0.250:2	0/1:0,2:34:2:1.00:2	./.	./.
chr2	11053740	rs3732105	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,56:32:57:0.982:2	0/1:0,36:31:36:1.00:2	0/1:0,6:27:6:1.00:2	0/1:50,37:31:87:0.425:2	0/1:0,132:31:132:1.00:2	0/1:43,40:31:83:0.482:2	0/1:0,112:31:112:1.00:2	./.	0/1:0,91:32:91:1.00:2	0/1:39,30:31:69:0.435:2	0/1:47,24:30:71:0.338:2
chr2	11332408	rs2230775	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,20:29:43:0.465:2	./.	./.	./.	./.	./.
chr2	11333994	rs2271621	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,7:31:10:0.700:2	0/1:5,3:34:8:0.375:2	./.	0/1:8,10:32:18:0.556:2	0/1:0,21:32:21:1.00:2	./.
chr2	11338854	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,4:32:188:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr2	11359120	rs2230774	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,104:32:106:0.981:2	0/1:0,85:32:85:1.00:2	0/1:14,12:31:26:0.462:2	0/1:3,107:31:110:0.973:2	0/1:46,24:31:70:0.343:2	./.	./.	0/1:2,102:31:104:0.981:2	0/1:83,58:32:141:0.411:2	./.	0/1:3,158:32:162:0.981:2
chr2	11587798	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.	./.
chr2	11591862	rs201487102	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,6:32:153:0.039:2	./.
chr2	11591879	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:33:117:0.034:2	0/1:87,6:32:93:0.065:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	11593766	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:30:132:0.030:2	./.	./.
chr2	11597303	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,5:28:158:0.032:2	./.	./.	./.	./.	./.
chr2	11605936	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:33:127:0.031:2	./.	./.
chr2	11702661	rs10929757	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,50:32:128:0.391:2	0/1:34,31:31:65:0.477:2	0/1:0,15:31:15:1.00:2	0/1:87,71:32:158:0.449:2	0/1:83,82:32:167:0.497:2	0/1:78,70:32:149:0.473:2	0/1:0,181:33:181:1.00:2	./.	0/1:73,71:33:144:0.493:2	0/1:74,65:32:139:0.468:2	0/1:60,52:31:112:0.464:2
chr2	11727507	rs13394619	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:30,18:33:48:0.375:2	0/1:16,19:31:35:0.543:2	./.	./.	0/1:29,9:31:38:0.237:2	./.	0/1:33,11:32:44:0.250:2	0/1:0,36:31:36:1.00:2	0/1:24,21:30:45:0.467:2	0/1:28,14:31:42:0.333:2	0/1:36,12:31:48:0.250:2
chr2	11728854	rs72772076	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,11:31:24:0.458:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	11731541	rs189034221	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,17:31:48:0.354:2	./.	./.	./.	./.	./.	./.
chr2	11733134	rs76842987	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,22:29:63:0.349:2
chr2	11738091	rs1435547	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:29:80:1.00:2	0/1:0,34:27:34:1.00:2	0/1:0,6:28:6:1.00:2	0/1:0,82:29:82:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,69:29:69:1.00:2	0/1:0,60:29:60:1.00:2	0/1:0,94:29:94:1.00:2	0/1:0,81:30:81:1.00:2	0/1:0,62:29:62:1.00:2	0/1:0,85:29:85:1.00:2
chr2	11738884	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,32:31:74:0.432:2	0/1:18,28:32:46:0.609:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	11738951	rs1865576	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,23:32:60:0.383:2	./.
chr2	11740961	rs76644468	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,33:32:89:0.371:2	./.	./.	./.	./.	./.	0/1:32,50:33:82:0.610:2	./.
chr2	11752635	rs2304399	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,184:30:184:1.00:2	0/1:0,118:30:118:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,184:30:184:1.00:2	0/1:2,189:29:191:0.990:2	0/1:0,182:30:182:1.00:2	0/1:1,194:31:195:0.995:2	0/1:0,187:30:188:1.00:2	0/1:0,177:31:177:1.00:2	0/1:0,185:30:185:1.00:2	0/1:0,177:30:178:1.00:2
chr2	11770219	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.	./.	./.
chr2	11773065	rs368641146	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:31:124:0.033:2	./.
chr2	11774324	rs2304402	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,127:31:127:1.00:2	0/1:0,91:32:91:1.00:2	0/1:1,23:31:24:0.958:2	0/1:74,81:31:155:0.523:2	0/1:87,94:30:181:0.519:2	0/1:91,102:30:193:0.528:2	0/1:1,191:30:193:0.995:2	0/1:2,189:30:191:0.990:2	./.	./.	0/1:70,80:31:150:0.533:2
chr2	11810091	rs114415067	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	11810095	rs6432225	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,2:32:2:1.00:2	0/1:0,2:32:2:1.00:2	./.	0/1:0,6:33:6:1.00:2	./.	./.	0/1:0,2:31:2:1.00:2	./.	0/1:0,2:28:2:1.00:2	./.	./.
chr2	11911761	rs11538448	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,92:33:177:0.520:2	./.	./.
chr2	11913845	rs145180224	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,20:29:37:0.541:2	./.
chr2	11935579	rs146100011	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,80:32:152:0.526:2	./.	./.	./.	./.	./.	./.	./.
chr2	12864766	rs2288192	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:101,96:32:197:0.487:2	./.	0/1:3,182:33:185:0.984:2	0/1:5,178:33:183:0.973:2	./.	./.	./.
chr2	14777101	rs190824730	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,11:30:17:0.647:2	./.
chr2	14779829	rs2196267	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:30:10:1.00:2	0/1:59,76:30:135:0.563:2	0/1:46,26:29:72:0.361:2	0/1:54,44:29:98:0.449:2	0/1:46,39:29:85:0.459:2	0/1:69,56:29:125:0.448:2	./.	0/1:55,51:30:106:0.481:2	./.
chr2	14780038	rs1865456	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,14:32:35:0.400:2	0/1:16,8:32:24:0.333:2	0/1:17,17:32:34:0.500:2	0/1:8,8:33:16:0.500:2	0/1:19,6:32:25:0.240:2	./.	0/1:16,17:32:33:0.515:2	./.
chr2	15372562	rs6710817	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,27:31:57:0.474:2	./.	0/1:38,24:31:62:0.387:2	./.	0/1:48,20:32:68:0.294:2	./.	./.	./.
chr2	15378808	rs34080125	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,18:33:38:0.474:2	./.	0/1:21,13:32:34:0.382:2	./.	./.	./.	./.	./.
chr2	15519924	rs116210837	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,26:31:46:0.565:2	./.	./.	./.	./.	./.	./.	./.
chr2	15523436	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:32:122:0.033:2	./.	./.	./.	./.	./.
chr2	15533779	rs9710889	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,39:33:75:0.520:2	0/1:28,12:32:40:0.300:2	0/1:0,3:31:3:1.00:2	0/1:0,75:31:75:1.00:2	0/1:22,13:31:35:0.371:2	0/1:44,18:31:62:0.290:2	0/1:1,26:32:27:0.963:2	0/1:0,56:32:56:1.00:2	0/1:0,46:33:46:1.00:2	0/1:32,19:32:51:0.373:2	0/1:43,30:31:73:0.411:2
chr2	15601441	rs7590340	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,19:32:47:0.404:2	0/1:16,10:32:26:0.385:2	0/1:0,5:31:5:1.00:2	0/1:0,56:31:56:1.00:2	0/1:23,13:30:36:0.361:2	0/1:22,21:31:43:0.488:2	0/1:1,27:30:28:0.964:2	0/1:0,35:31:35:1.00:2	0/1:1,43:31:44:0.977:2	0/1:19,18:32:37:0.486:2	0/1:43,35:33:78:0.449:2
chr2	15607842	rs4668909	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,47:33:97:0.485:2	0/1:34,28:32:62:0.452:2	0/1:0,21:32:21:1.00:2	0/1:47,66:33:113:0.584:2	0/1:31,31:32:62:0.500:2	0/1:48,42:32:90:0.467:2	0/1:0,90:32:90:1.00:2	0/1:0,106:33:106:1.00:2	0/1:0,127:34:127:1.00:2	0/1:38,46:32:84:0.548:2	0/1:56,75:32:131:0.573:2
chr2	15614404	rs13014906	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,37:32:71:0.521:2	0/1:14,18:31:32:0.563:2	0/1:0,6:32:6:1.00:2	0/1:0,34:32:34:1.00:2	0/1:17,15:31:32:0.469:2	0/1:32,22:31:54:0.407:2	0/1:3,27:32:30:0.900:2	0/1:0,61:32:61:1.00:2	0/1:0,59:33:59:1.00:2	0/1:21,28:33:49:0.571:2	0/1:55,36:32:91:0.396:2
chr2	15615910	rs1990754	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,41:30:94:0.436:2	0/1:20,20:29:40:0.500:2	0/1:0,14:30:14:1.00:2	0/1:1,108:30:109:0.991:2	0/1:20,32:29:52:0.615:2	0/1:40,41:29:81:0.506:2	0/1:3,56:29:59:0.949:2	0/1:0,89:30:89:1.00:2	0/1:0,95:31:95:1.00:2	0/1:44,46:31:90:0.511:2	0/1:61,69:30:130:0.531:2
chr2	15618339	rs1125534	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,3:32:17:0.176:2	0/1:6,3:33:9:0.333:2	./.	0/1:0,18:33:18:1.00:2	0/1:10,6:32:16:0.375:2	0/1:13,12:32:25:0.480:2	0/1:0,8:32:8:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,22:33:22:1.00:2	0/1:14,5:32:19:0.263:2	0/1:23,9:33:32:0.281:2
chr2	15618404	rs76459791	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,23:32:42:0.548:2
chr2	15674686	rs13029846	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,72:33:153:0.471:2	0/1:49,34:31:83:0.410:2	0/1:0,18:32:18:1.00:2	0/1:93,61:32:154:0.396:2	0/1:58,38:32:96:0.396:2	0/1:76,73:33:149:0.490:2	0/1:1,94:33:95:0.989:2	0/1:7,129:32:136:0.949:2	0/1:1,141:33:142:0.993:2	0/1:94,46:32:140:0.329:2	0/1:115,80:33:195:0.410:2
chr2	15694260	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:32:52:0.077:2	./.	./.	./.
chr2	15735648	rs2302929	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,26:32:49:0.531:2	./.	./.	./.	0/1:37,60:33:97:0.619:2
chr2	15735692	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:32:109:0.037:2	./.	./.	./.	./.	./.
chr2	15747393	rs10929378	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,87:31:87:1.00:2	0/1:0,37:30:37:1.00:2	0/1:1,75:30:76:0.987:2	0/1:34,22:31:56:0.393:2	0/1:43,39:30:82:0.476:2	0/1:47,47:32:94:0.500:2	0/1:0,52:31:52:1.00:2	0/1:0,115:32:115:1.00:2
chr2	15768981	rs62122280	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,25:32:25:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,3:33:3:1.00:2	./.	./.	./.	0/1:3,7:31:10:0.700:2	0/1:15,10:32:25:0.400:2	0/1:7,18:32:25:0.720:2	./.	./.
chr2	15840623	rs58183965	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,45:32:90:0.506:2	./.	./.	./.	./.	./.
chr2	15840645	rs4668962	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,80:32:80:1.00:2	0/1:4,41:33:45:0.911:2	0/1:8,7:33:15:0.467:2	./.	0/1:1,56:32:57:0.982:2	0/1:40,37:32:77:0.481:2	0/1:2,55:33:57:0.965:2	0/1:0,91:33:91:1.00:2	0/1:0,86:34:86:1.00:2	./.	./.
chr2	16082255	rs141260022	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,5:28:191:0.026:2
chr2	16734284	rs12997119	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:29:14:0.571:2	./.	./.	./.	./.	./.	0/1:76,67:29:143:0.469:2	0/1:68,56:29:124:0.452:2	0/1:70,72:29:142:0.507:2
chr2	17696573	rs834514	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,104:32:104:1.00:2	0/1:0,71:31:71:1.00:2	0/1:12,17:31:29:0.586:2	0/1:2,156:31:158:0.987:2	./.	0/1:0,140:31:140:1.00:2	0/1:2,109:32:111:0.982:2	0/1:3,163:31:166:0.982:2	0/1:1,168:32:169:0.994:2	0/1:102,60:32:162:0.370:2	0/1:104,79:31:183:0.432:2
chr2	17696756	rs17314548	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,25:32:67:0.373:2	./.
chr2	17697057	rs17380212	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,54:33:105:0.514:2	./.
chr2	17697404	rs76177128	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,29:32:64:0.453:2	./.
chr2	17697635	rs181531922	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,19:33:40:0.475:2	./.	./.	./.	./.	./.	0/1:20,21:33:41:0.512:2	./.
chr2	17698085	rs62130402	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,19:31:37:0.514:2	./.
chr2	17698091	rs62130403	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,16:32:31:0.516:2	./.
chr2	17698213	rs62130404	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,15:33:65:0.231:2	./.
chr2	17698220	rs62130405	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,16:32:68:0.235:2	./.
chr2	17698678	rs665312	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:33:27:1.00:2	0/1:0,13:32:13:1.00:2	0/1:1,6:32:7:0.857:2	0/1:0,13:32:13:1.00:2	./.	0/1:0,34:31:34:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,35:32:35:1.00:2	0/1:1,16:33:17:0.941:2	0/1:17,16:32:34:0.485:2
chr2	17699275	rs114644105	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,30:31:57:0.526:2	./.
chr2	17846775	rs139276977	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,45:32:91:0.495:2	0/1:22,15:31:37:0.405:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	17851746	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:161,4:32:165:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr2	17884495	rs1065381	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:16,16:31:32:0.500:2	0/1:13,10:28:23:0.435:2	./.	./.	0/1:0,32:30:32:1.00:2	./.	./.	./.	./.	./.	./.
chr2	17897488	rs35195207	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,69:32:70:0.986:2	./.	./.	./.	./.	./.	./.
chr2	17942775	rs1812152	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,54:31:156:0.348:2	0/1:41,34:31:75:0.453:2	0/1:0,20:32:20:1.00:2	0/1:82,95:31:177:0.537:2	./.	0/1:1,138:30:139:0.993:2	0/1:2,112:31:114:0.982:2	0/1:0,173:31:173:1.00:2	0/1:0,149:31:149:1.00:2	0/1:4,140:31:145:0.972:2	0/1:1,186:30:187:0.995:2
chr2	17946243	rs16981869	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,6:32:189:0.032:2	./.	0/1:54,39:33:93:0.419:2	0/1:70,74:32:144:0.514:2
chr2	17954027	rs300175	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,83:32:83:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,68:32:68:1.00:2	0/1:1,82:32:83:0.988:2
chr2	17954421	rs300177	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,40:32:82:0.488:2	0/1:27,19:32:46:0.413:2	0/1:0,13:32:13:1.00:2	0/1:44,29:33:73:0.397:2	./.	0/1:0,73:32:73:1.00:2	0/1:0,60:33:60:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,71:33:72:1.00:2	0/1:1,52:33:53:0.981:2	0/1:1,89:32:90:0.989:2
chr2	17962450	rs300168	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,20:32:44:0.455:2	0/1:21,11:33:32:0.344:2	0/1:0,12:32:12:1.00:2	0/1:28,20:32:48:0.417:2	./.	0/1:0,42:32:42:1.00:2	0/1:1,24:32:25:0.960:2	0/1:0,37:32:37:1.00:2	0/1:0,40:34:40:1.00:2	0/1:19,21:33:40:0.525:2	0/1:36,20:32:56:0.357:2
chr2	17962518	rs300169	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,21:32:53:0.396:2	0/1:16,19:31:35:0.543:2	0/1:0,5:30:5:1.00:2	0/1:45,22:31:67:0.328:2	./.	0/1:0,51:29:51:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,67:32:67:1.00:2
chr2	17963171	rs17315702	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,50:33:110:0.455:2
chr2	17998025	rs34069439	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:23,19:32:42:0.452:2	0/1:16,11:30:27:0.407:2	0/1:0,6:30:6:1.00:2	./.	0/1:17,21:30:38:0.553:2	0/1:29,22:29:51:0.431:2	0/1:15,11:30:26:0.423:2	0/1:0,39:31:39:1.00:2	0/1:25,15:30:40:0.375:2	./.	0/1:0,31:31:31:1.00:2
chr2	17998095	rs35858730	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:26,28:31:54:0.519:2	0/1:21,19:31:40:0.475:2	0/1:0,8:31:8:1.00:2	./.	0/1:43,46:30:90:0.517:2	0/1:38,58:30:96:0.604:2	0/1:48,40:31:88:0.455:2	0/1:1,101:31:103:0.990:2	0/1:67,37:32:104:0.356:2	./.	0/1:0,70:31:70:1.00:2
chr2	17998331	rs13001625	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:24,18:32:42:0.429:2	0/1:16,7:33:23:0.304:2	0/1:0,5:32:5:1.00:2	./.	0/1:16,27:32:43:0.628:2	0/1:29,32:31:61:0.525:2	0/1:27,33:32:60:0.550:2	0/1:1,53:32:54:0.981:2	0/1:34,26:33:60:0.433:2	./.	0/1:0,48:32:48:1.00:2
chr2	18112314	rs35186900	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,81:31:181:0.448:2	0/1:107,82:32:189:0.434:2	./.	./.	./.	0/1:70,109:32:179:0.609:2
chr2	18112473	rs4240213	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,139:32:139:1.00:2	0/1:0,70:31:70:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,144:31:144:1.00:2	0/1:0,90:30:90:1.00:2	0/1:64,81:31:145:0.559:2	0/1:86,65:31:151:0.430:2	0/1:0,170:31:170:1.00:2	0/1:0,132:32:132:1.00:2	0/1:0,113:31:113:1.00:2	0/1:104,74:31:178:0.416:2
chr2	18113508	rs3747516	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,45:31:126:0.357:2	./.	0/1:57,41:32:98:0.418:2	./.	./.
chr2	18113623	rs4832524	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,49:29:98:0.500:2	0/1:33,46:30:79:0.582:2	0/1:0,16:29:16:1.00:2	0/1:0,102:29:102:1.00:2	0/1:96,66:29:162:0.407:2	0/1:79,51:29:130:0.392:2	0/1:91,88:29:179:0.492:2	0/1:83,93:30:176:0.528:2	0/1:71,61:31:133:0.462:2	0/1:1,117:29:118:0.992:2	./.
chr2	18113789	rs3747515	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,8:31:21:0.381:2	0/1:13,9:32:22:0.409:2	./.	0/1:16,12:31:28:0.429:2	0/1:11,8:32:19:0.421:2	0/1:16,21:31:37:0.568:2	./.	0/1:7,7:30:14:0.500:2	./.	0/1:10,8:32:18:0.444:2	./.
chr2	18757501	rs3902946	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,186:32:186:1.00:2	./.	0/1:121,78:32:199:0.392:2	./.	./.	./.	0/1:99,91:33:190:0.479:2
chr2	18765169	rs146275944	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,24:31:44:0.545:2	./.	./.	./.	./.	./.
chr2	18765181	rs76890755	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,19:30:35:0.543:2	./.	./.	./.	./.	./.	./.
chr2	18765403	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2	./.	./.	./.	./.
chr2	18765458	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:34:167:0.024:2
chr2	18768321	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,6:34:120:0.050:2	./.	./.	./.	./.	./.	./.	./.
chr2	18768850	rs16985306	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,20:31:20:1.00:2	./.	0/1:15,12:30:27:0.444:2	./.	./.	./.	0/1:33,22:32:55:0.400:2
chr2	20100825	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,4:32:100:0.040:2	./.	./.	./.	./.	./.	./.
chr2	20101487	rs2304589	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,22:29:45:0.489:2	./.	0/1:39,26:30:65:0.400:2	0/1:19,20:29:39:0.513:2	./.
chr2	20131079	rs1191778	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,119:32:119:1.00:2	0/1:0,60:32:60:1.00:2	0/1:3,6:32:9:0.667:2	0/1:80,60:33:140:0.429:2	0/1:48,51:32:99:0.515:2	0/1:82,78:33:160:0.488:2	0/1:45,38:33:83:0.458:2	0/1:1,114:33:115:0.991:2	0/1:71,60:34:131:0.458:2	./.	0/1:0,152:33:152:1.00:2
chr2	20133221	rs2293669	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:30:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	20135283	rs6741091	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,16:33:59:0.271:2	./.	0/1:29,17:33:46:0.370:2	./.	0/1:35,25:34:60:0.417:2	0/1:0,85:33:85:1.00:2	./.
chr2	20146230	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:32:73:0.055:2	./.	./.	./.	./.	./.
chr2	20189015	rs1060742	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,62:29:115:0.539:2	./.
chr2	20192931	rs35973216	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,24:32:56:0.429:2	./.	./.	./.	./.	0/1:27,34:32:61:0.557:2	./.
chr2	20202929	rs28452699	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,49:32:125:0.392:2	./.	./.	./.	./.	0/1:50,41:32:91:0.451:2	./.
chr2	20203047	rs370377105	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,5:27:77:0.065:2	./.	./.	./.	./.	./.	./.	./.
chr2	20205541	rs52826764	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,57:32:96:0.594:2	./.	./.
chr2	20205680	rs28401180	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,34:31:60:0.567:2	./.	0/1:53,41:32:94:0.436:2	./.	0/1:35,39:33:74:0.527:2	0/1:0,52:32:52:1.00:2	./.
chr2	20205794	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:34:149:0.027:2
chr2	20205848	rs28598872	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,71:33:180:0.394:2	./.	0/1:110,77:33:187:0.412:2	./.	0/1:77,68:33:145:0.469:2	0/1:2,115:32:117:0.983:2	./.
chr2	20240668	rs3731673	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,26:30:58:0.448:2	./.	0/1:19,25:31:45:0.568:2	./.	./.	./.	./.	./.
chr2	20403794	rs10205485	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:31:60:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,54:33:54:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,37:32:38:1.00:2
chr2	20403949	rs2230924	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:33:7:0.429:2
chr2	20423063	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,4:32:9:0.444:2	./.	./.	./.
chr2	20423064	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:31:8:0.500:2	./.	./.	./.
chr2	20458047	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:33:147:0.027:2	./.	./.	./.	./.	./.
chr2	20490515	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:30:105:0.038:2	./.
chr2	20526131	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,4:29:64:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr2	20647241	rs7043	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,19:29:43:0.442:2	./.	./.	./.
chr2	20648124	rs112622561	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,32:27:55:0.582:2	./.	./.	./.	./.	./.	./.	./.
chr2	20648211	rs1062292	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:7,9:29:16:0.563:2	0/1:1,14:32:15:0.933:2	./.	./.	0/1:15,16:31:31:0.516:2	0/1:5,6:33:11:0.545:2	0/1:2,5:33:7:0.714:2	0/1:0,15:30:15:1.00:2
chr2	20790853	rs149151020	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,54:30:120:0.450:2	./.	./.	./.	./.	0/1:49,26:32:75:0.347:2
chr2	20791002	rs56129345	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,61:32:133:0.459:2	./.	./.	./.
chr2	20792173	rs11096678	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,3:22:3:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,98:31:98:1.00:2	0/1:1,88:31:89:0.989:2	0/1:0,76:32:76:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,46:32:46:1.00:2
chr2	20818764	rs3732149	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,98:27:103:0.980:2	0/1:59,44:29:108:0.427:2	./.	./.	./.	./.	0/1:38,29:27:69:0.433:2
chr2	20818816	rs111886213	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,62:30:141:0.443:2	./.	./.	./.	./.	./.	./.
chr2	20818840	rs34708707	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,76:30:145:0.524:2	./.	./.	./.	./.	./.
chr2	20823724	rs6531248	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:28:30:1.00:2	0/1:0,9:28:9:1.00:2	0/1:0,6:28:6:1.00:2	0/1:1,37:28:38:0.974:2	0/1:0,48:27:48:1.00:2	0/1:0,30:26:30:1.00:2	0/1:1,48:29:49:0.980:2	0/1:0,50:28:50:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,47:27:47:1.00:2	0/1:0,22:30:22:1.00:2
chr2	20824498	rs2305458	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:33:4:0.750:2	./.	0/1:3,46:32:49:0.939:2	0/1:0,56:31:56:1.00:2	0/1:19,35:32:54:0.648:2	0/1:1,48:31:49:0.980:2	0/1:0,23:32:23:1.00:2	0/1:13,14:32:27:0.519:2	0/1:21,12:32:33:0.364:2
chr2	20824559	rs2305457	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:22,21:32:43:0.488:2	0/1:7,14:32:21:0.667:2	0/1:2,3:32:5:0.600:2	./.	./.	./.	0/1:31,19:32:50:0.380:2	./.	./.	./.	0/1:24,19:32:43:0.442:2
chr2	20838222	rs3796065	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,94:31:94:1.00:2	0/1:73,74:31:147:0.503:2	./.	./.	./.	./.	0/1:45,56:32:101:0.554:2
chr2	20838318	rs3796064	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:94,73:31:167:0.437:2	0/1:39,30:32:69:0.435:2	./.	./.	./.	./.	0/1:120,71:32:191:0.372:2	0/1:100,85:32:185:0.459:2	./.	./.	0/1:124,66:32:190:0.347:2
chr2	20885321	rs17663874	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,8:31:27:0.296:2	0/1:9,9:32:18:0.500:2	0/1:3,3:31:6:0.500:2	0/1:14,11:32:25:0.440:2	./.	./.	./.	./.	0/1:15,4:32:19:0.211:2	./.	./.
chr2	21225281	rs1042034	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:32:38:1.00:2	0/1:0,39:32:39:1.00:2	0/1:2,3:31:5:0.600:2	0/1:0,48:32:48:1.00:2	0/1:28,20:31:48:0.417:2	0/1:0,54:31:54:1.00:2	0/1:0,25:31:25:1.00:2	0/1:1,38:31:39:0.974:2	0/1:0,48:32:48:1.00:2	0/1:26,16:30:42:0.381:2	0/1:0,53:32:53:1.00:2
chr2	21225485	rs1801702	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,25:30:53:0.472:2	./.	./.	0/1:36,32:30:68:0.471:2	0/1:52,62:29:114:0.544:2
chr2	21225753	rs1042031	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,18:32:47:0.383:2	0/1:21,20:32:41:0.488:2	0/1:4,6:31:10:0.600:2	0/1:0,63:31:63:1.00:2	./.	./.	0/1:24,19:32:43:0.442:2	./.	0/1:49,48:33:97:0.495:2	./.	0/1:49,50:32:99:0.505:2
chr2	21225912	rs1801703	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:29:13:0.308:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	21228827	rs1801701	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,53:31:110:0.482:2	./.	0/1:59,46:32:105:0.438:2	0/1:57,43:33:100:0.430:2	./.	./.
chr2	21231398	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:32:151:0.026:2	./.	./.	./.	./.
chr2	21231498	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:31:118:0.034:2	./.	./.	./.	./.
chr2	21231524	rs676210	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:30:11:0.455:2	./.	0/1:55,36:30:92:0.396:2	./.	./.	./.	./.	0/1:69,53:32:122:0.434:2	./.
chr2	21231592	rs6413458	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,28:32:63:0.444:2	./.	./.	0/1:28,29:32:57:0.509:2	0/1:50,45:32:95:0.474:2
chr2	21231887	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,18:32:41:0.439:2	./.	./.	./.	./.	./.
chr2	21232195	rs693	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,59:32:101:0.584:2	0/1:48,36:32:84:0.429:2	./.	./.	./.	0/1:0,85:32:85:1.00:2	./.	0/1:2,92:31:94:0.979:2	0/1:67,83:34:150:0.553:2	./.	./.
chr2	21232803	rs584542	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:31:91:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,75:29:75:1.00:2	0/1:0,72:28:72:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,60:28:60:1.00:2	0/1:0,56:32:56:1.00:2	0/1:1,91:31:92:0.989:2	0/1:0,70:30:70:1.00:2	0/1:0,88:29:88:1.00:2
chr2	21232804	rs1041968	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,37:33:91:0.407:2	0/1:28,21:32:49:0.429:2	./.	./.	./.	0/1:0,52:31:52:1.00:2	./.	0/1:2,54:31:56:0.964:2	0/1:71,22:32:93:0.237:2	./.	./.
chr2	21233972	rs533617	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,99:29:176:0.563:2	./.	./.	./.	./.	./.	./.
chr2	21234006	rs186480094	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,71:30:195:0.366:2	./.	./.	./.
chr2	21235475	rs568413	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:33:56:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,45:33:45:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,49:33:49:1.00:2	0/1:1,44:33:45:0.978:2	0/1:0,69:33:69:1.00:2
chr2	21237968	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:30:97:0.041:2	./.	./.	./.	./.
chr2	21246519	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:30:71:0.057:2
chr2	21249716	rs12691202	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:64,74:30:138:0.536:2	0/1:43,44:31:87:0.506:2	./.	./.	./.	./.	0/1:66,31:30:97:0.320:2	./.	0/1:98,89:31:187:0.476:2	./.	./.
chr2	21250914	rs679899	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,38:32:66:0.576:2	0/1:13,18:32:31:0.581:2	0/1:0,9:31:9:1.00:2	0/1:1,48:31:49:0.980:2	0/1:21,29:31:50:0.580:2	./.	0/1:18,22:29:40:0.550:2	0/1:25,24:31:49:0.490:2	0/1:29,33:32:62:0.532:2	0/1:23,17:31:40:0.425:2	0/1:41,34:31:75:0.453:2
chr2	21263870	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:30:67:0.060:2	./.	./.
chr2	21263900	rs1367117	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,49:32:78:0.628:2	./.	0/1:26,35:31:61:0.574:2	./.	0/1:22,25:31:47:0.532:2	0/1:24,24:32:48:0.500:2	./.	./.
chr2	21360583	rs312966	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:17,19:30:36:0.528:2	0/1:19,9:29:28:0.321:2	0/1:3,3:30:6:0.500:2	./.	0/1:21,19:30:40:0.475:2	0/1:30,21:28:51:0.412:2	./.	0/1:27,13:28:40:0.325:2	0/1:32,29:30:61:0.475:2	0/1:9,25:28:34:0.735:2	./.
chr2	21363456	rs183014338	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:30,17:33:47:0.362:2	0/1:15,15:32:30:0.500:2	./.	./.	./.	./.	0/1:18,16:32:34:0.471:2	./.	./.	./.	./.
chr2	23729988	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:32:64:0.063:2	./.	./.
chr2	23785183	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:31:11:0.364:2	./.	./.
chr2	23865260	rs642931	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,82:29:83:0.988:2	0/1:0,79:29:79:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,109:29:109:1.00:2	0/1:0,125:29:125:1.00:2	0/1:2,108:29:110:0.982:2	0/1:56,68:28:124:0.548:2	0/1:1,136:29:137:0.993:2	0/1:0,105:30:105:1.00:2	0/1:62,39:28:101:0.386:2	./.
chr2	23918891	rs116699585	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,44:31:122:0.361:2	./.	./.	./.	./.	./.	./.
chr2	23919207	rs61744252	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,36:31:90:0.400:2	./.	./.	./.	./.	./.	./.
chr2	23919375	rs3795942	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:31:79:1.00:2	0/1:0,38:32:38:1.00:2	0/1:4,5:32:9:0.556:2	0/1:72,37:31:109:0.339:2	./.	./.	0/1:1,92:31:93:0.989:2	0/1:66,67:31:133:0.504:2	./.	0/1:46,35:31:81:0.432:2	./.
chr2	24042689	rs62125899	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,4:32:13:0.308:2	0/1:26,22:33:48:0.458:2	./.	./.	./.	./.	./.	./.	./.
chr2	24046426	rs75866363	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,25:32:49:0.510:2	./.	./.	./.	./.	0/1:23,22:31:45:0.489:2
chr2	24055058	rs10432637	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,105:33:105:1.00:2	0/1:0,76:33:76:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,89:33:89:1.00:2	0/1:0,54:33:54:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,62:33:62:1.00:2	0/1:0,115:33:115:1.00:2	0/1:0,99:34:99:1.00:2	0/1:1,92:33:93:0.989:2	0/1:0,131:33:131:1.00:2
chr2	24106445	rs150821390	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,28:30:66:0.424:2	./.	./.	./.	./.	./.	./.
chr2	24108652	rs7579201	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:31:63:1.00:2	0/1:0,25:29:25:1.00:2	0/1:0,12:29:12:1.00:2	0/1:0,69:30:69:1.00:2	0/1:0,68:29:68:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,93:29:93:1.00:2	0/1:0,119:29:119:1.00:2	0/1:0,117:31:117:1.00:2	0/1:0,81:30:81:1.00:2	0/1:0,94:30:94:1.00:2
chr2	24149439	rs61739076	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	0/1:2,4:29:6:0.667:2
chr2	24181159	rs12616678	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,17:31:70:0.243:2	0/1:81,37:30:118:0.314:2	./.	./.	0/1:0,88:32:88:1.00:2	0/1:62,33:32:95:0.347:2	0/1:108,45:31:153:0.294:2
chr2	24244603	rs115334231	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,60:31:135:0.444:2	./.	./.	./.	./.	./.	./.
chr2	24256071	rs17763463	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,38:32:80:0.475:2	./.	./.	./.	./.	./.	./.
chr2	24262060	rs3731620	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,91:32:159:0.572:2	./.	./.	./.	0/1:94,81:32:175:0.463:2	./.	./.	./.
chr2	24262098	rs374485799	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.	./.	./.	./.
chr2	24290671	rs61742149	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,76:30:148:0.514:2	./.	./.	./.	./.	0/1:105,65:31:170:0.382:2
chr2	24291260	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:33:166:0.024:2	./.	./.	./.	./.	./.
chr2	24291269	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:27:197:0.025:2	./.	./.	./.
chr2	24291273	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:31:172:0.023:2	./.	./.	./.	./.	./.
chr2	24291284	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:32:178:0.022:2	./.	./.	./.	./.	./.
chr2	24300563	rs10209238	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,44:32:108:0.407:2	./.	./.	./.	0/1:79,37:33:116:0.319:2	./.	./.	./.
chr2	24338428	rs1056123	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:35:12:0.250:2	./.	./.	./.	0/1:3,15:32:18:0.833:2	./.	./.	./.
chr2	24342505	rs1056122	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,5:33:24:0.208:2	0/1:0,14:32:14:1.00:2	0/1:16,20:32:36:0.556:2	./.	0/1:16,13:30:29:0.448:2	0/1:16,12:31:28:0.429:2	0/1:13,10:34:23:0.435:2	0/1:9,11:33:20:0.550:2
chr2	24342532	rs1134516	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,7:32:20:0.350:2	./.	./.	./.	0/1:12,9:30:21:0.429:2	./.	./.	./.
chr2	24344060	rs33913065	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:29:5:0.800:2	./.	0/1:1,41:28:42:0.976:2	0/1:28,19:29:47:0.404:2	./.	./.	0/1:34,26:29:60:0.433:2	0/1:25,29:28:54:0.537:2	0/1:45,26:29:71:0.366:2
chr2	24347274	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,19:30:49:0.388:2	./.	./.	./.	./.	./.
chr2	24358001	rs12329297	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,31:33:61:0.508:2	./.	./.	./.	0/1:35,19:31:54:0.352:2	./.	./.	./.
chr2	24369674	rs11693860	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,41:32:76:0.539:2	0/1:23,27:32:50:0.540:2	0/1:0,17:31:17:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,71:31:71:1.00:2	0/1:34,35:31:69:0.507:2	0/1:0,65:32:65:1.00:2	0/1:56,50:32:106:0.472:2	0/1:0,66:32:66:1.00:2	0/1:0,79:32:79:1.00:2
chr2	24384424	rs4665667	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,37:33:67:0.552:2	0/1:23,23:32:46:0.500:2	0/1:0,13:33:13:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,32:33:32:1.00:2	0/1:17,17:32:34:0.500:2	0/1:0,45:32:45:1.00:2	0/1:41,34:33:75:0.453:2	0/1:0,41:32:41:1.00:2	0/1:0,69:33:69:1.00:2
chr2	24387090	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:32:94:0.043:2	./.	./.
chr2	24390517	rs2288072	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,36:31:95:0.379:2	0/1:33,17:32:50:0.340:2	0/1:0,9:30:9:1.00:2	0/1:47,57:31:104:0.548:2	0/1:33,26:31:59:0.441:2	0/1:50,46:31:96:0.479:2	0/1:30,22:32:52:0.423:2	0/1:44,39:31:83:0.470:2	./.	0/1:40,43:32:83:0.518:2	0/1:45,40:32:85:0.471:2
chr2	24395506	rs889830	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,37:28:100:0.370:2	0/1:27,28:29:55:0.509:2	0/1:0,14:29:14:1.00:2	0/1:0,103:29:103:1.00:2	0/1:0,78:29:78:1.00:2	0/1:0,132:29:132:1.00:2	0/1:66,63:29:129:0.488:2	0/1:0,112:28:112:1.00:2	0/1:65,60:29:126:0.480:2	0/1:0,80:28:80:1.00:2	0/1:0,101:27:101:1.00:2
chr2	24398446	rs2042468	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,27:30:51:0.529:2	0/1:12,14:31:26:0.538:2	0/1:0,3:31:3:1.00:2	0/1:18,22:31:40:0.550:2	0/1:10,9:32:19:0.474:2	0/1:16,15:31:31:0.484:2	0/1:20,22:31:42:0.524:2	0/1:27,23:31:50:0.460:2	./.	0/1:21,19:30:40:0.475:2	0/1:24,24:31:48:0.500:2
chr2	24400744	rs115212978	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,25:31:58:0.431:2	./.	./.	./.
chr2	24406515	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:33:122:0.033:2
chr2	24413298	rs2288073	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,98:33:194:0.505:2	0/1:66,56:31:122:0.459:2	0/1:71,68:32:139:0.489:2	./.	0/1:93,87:31:180:0.483:2	0/1:85,99:33:184:0.538:2	0/1:78,58:33:136:0.426:2	0/1:101,85:32:186:0.457:2
chr2	24431184	rs2303291	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,40:30:84:0.476:2	0/1:51,43:30:94:0.457:2	0/1:32,26:30:58:0.448:2	./.	0/1:67,63:31:130:0.485:2	0/1:33,37:32:70:0.529:2	0/1:42,30:31:72:0.417:2	0/1:41,21:30:62:0.339:2
chr2	24432839	rs2303296	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,49:32:90:0.544:2	0/1:30,39:32:69:0.565:2	0/1:32,35:31:67:0.522:2	./.	0/1:42,48:32:90:0.533:2	0/1:38,46:32:84:0.548:2	0/1:47,36:32:83:0.434:2	0/1:46,49:32:95:0.516:2
chr2	24435610	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:32:59:0.068:2	./.
chr2	24439048	rs3731625	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:50,33:32:83:0.398:2	0/1:28,26:31:54:0.481:2	./.	./.	./.	./.	0/1:63,53:32:116:0.457:2	./.	0/1:44,62:33:106:0.585:2	./.	./.
chr2	24440857	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:29:81:0.049:2	./.
chr2	24524846	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:33:101:0.040:2
chr2	24524958	rs7603997	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,17:32:51:0.333:2	0/1:20,8:32:28:0.286:2	./.	0/1:38,38:32:76:0.500:2	0/1:41,38:31:79:0.481:2	0/1:53,29:30:82:0.354:2	0/1:50,24:32:74:0.324:2	0/1:42,46:32:88:0.523:2	0/1:0,58:33:58:1.00:2	0/1:50,43:32:93:0.462:2	0/1:40,47:32:87:0.540:2
chr2	24531598	rs79087404	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,15:28:31:0.484:2	./.	./.
chr2	24905927	rs11125744	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,37:33:38:0.974:2	0/1:0,22:32:22:1.00:2	./.	0/1:0,36:33:36:1.00:2	0/1:20,13:32:33:0.394:2	0/1:22,16:32:38:0.421:2	0/1:0,35:33:35:1.00:2	0/1:0,41:33:41:1.00:2	0/1:3,56:33:59:0.949:2	0/1:0,54:33:54:1.00:2	0/1:0,52:32:53:1.00:2
chr2	24920663	rs41281513	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,24:33:66:0.364:2	./.	./.	./.	./.	./.	./.	./.
chr2	24929851	rs3731628	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,56:32:120:0.467:2	./.	./.
chr2	24974945	rs11125763	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,157:33:157:1.00:2	0/1:0,111:33:111:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,160:33:160:1.00:2	0/1:75,58:32:133:0.436:2	0/1:0,162:32:162:1.00:2	0/1:0,186:33:186:1.00:2	0/1:0,149:32:149:1.00:2	0/1:1,152:33:153:0.993:2	0/1:1,167:32:168:0.994:2	0/1:0,170:32:170:1.00:2
chr2	24974958	rs1804645	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,75:31:163:0.460:2	./.	./.	./.	./.	./.	./.	0/1:86,90:29:176:0.511:2
chr2	25022598	rs1550116	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,33:28:68:0.485:2	./.	0/1:36,24:28:60:0.400:2	./.	./.	./.	0/1:32,35:29:67:0.522:2	0/1:46,49:30:95:0.516:2
chr2	25038514	rs141799599	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,48:32:87:0.552:2	./.	./.	./.	./.	./.	./.
chr2	25044462	rs77454507	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,79:32:159:0.497:2	./.	./.	./.	./.	./.	./.	./.
chr2	25046090	rs1127568	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,23:31:50:0.460:2	0/1:18,17:30:35:0.486:2	0/1:1,4:31:5:0.800:2	0/1:35,31:31:66:0.470:2	0/1:38,36:29:74:0.486:2	0/1:1,83:31:84:0.988:2	0/1:48,44:31:92:0.478:2	0/1:0,93:31:93:1.00:2	0/1:1,83:32:84:0.988:2	0/1:44,33:31:77:0.429:2	0/1:0,83:30:83:1.00:2
chr2	25050977	rs7566416	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:40,39:31:79:0.494:2	0/1:19,20:32:39:0.513:2	./.	0/1:76,43:31:119:0.361:2	0/1:91,75:30:166:0.452:2	0/1:0,92:31:92:1.00:2	0/1:99,72:30:171:0.421:2	0/1:2,122:30:124:0.984:2	0/1:0,91:31:91:1.00:2	0/1:51,49:31:100:0.490:2	0/1:0,81:31:81:1.00:2
chr2	25057769	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,4:32:102:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr2	25063428	rs78927940	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,35:30:68:0.515:2	./.	./.
chr2	25063429	rs77978025	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,35:32:68:0.515:2	./.	./.
chr2	25064157	rs2241758	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,13:30:26:0.500:2	./.
chr2	25064193	rs2241759	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,19:31:32:0.594:2	0/1:15,11:31:26:0.423:2	0/1:0,6:29:6:1.00:2	0/1:25,20:32:45:0.444:2	0/1:22,29:31:51:0.569:2	0/1:13,18:29:31:0.581:2	0/1:26,28:31:54:0.519:2	0/1:2,67:30:69:0.971:2	./.	./.	0/1:0,15:31:15:1.00:2
chr2	25141434	rs61732745	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,48:32:106:0.453:2	./.
chr2	25141538	rs11676272	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,31:32:74:0.419:2	0/1:31,22:31:53:0.415:2	./.	0/1:63,52:31:115:0.452:2	0/1:93,73:32:166:0.440:2	0/1:73,54:31:127:0.425:2	0/1:91,75:33:166:0.452:2	0/1:80,71:32:151:0.470:2	0/1:68,53:32:121:0.438:2	0/1:48,49:32:97:0.505:2	0/1:45,52:32:97:0.536:2
chr2	25180825	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,4:30:119:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr2	25180826	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,4:31:119:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr2	25180827	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,4:31:118:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr2	25181488	rs12986502	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,10:32:15:0.667:2	./.	./.	./.	./.	./.	./.
chr2	25190127	rs6749438	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,49:33:136:0.360:2	./.	./.
chr2	25194741	rs7593864	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:31:27:1.00:2	0/1:1,21:31:22:0.955:2	0/1:0,10:31:10:1.00:2	0/1:0,66:31:66:1.00:2	0/1:41,42:31:83:0.506:2	0/1:0,60:30:60:1.00:2	0/1:0,74:31:74:1.00:2	0/1:29,29:31:58:0.500:2	0/1:0,56:32:56:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,32:31:32:1.00:2
chr2	25314186	rs2918630	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,9:32:31:0.290:2	0/1:84,100:33:184:0.543:2	0/1:81,109:32:190:0.574:2	0/1:2,183:33:185:0.989:2	0/1:102,87:33:189:0.460:2	0/1:87,103:32:190:0.542:2	0/1:99,84:33:183:0.459:2	0/1:107,86:32:193:0.446:2	0/1:93,87:33:180:0.483:2
chr2	25354643	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:177,12:33:190:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr2	25358426	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:33:160:0.025:2	./.	./.	./.	./.
chr2	25359422	rs3731631	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,19:30:36:0.528:2	0/1:13,17:31:30:0.567:2	0/1:0,12:30:12:1.00:2	0/1:49,53:31:102:0.520:2	./.	./.	0/1:61,52:31:113:0.460:2	./.	0/1:46,37:32:83:0.446:2	0/1:27,31:31:58:0.534:2	0/1:32,29:30:61:0.475:2
chr2	25377176	rs2164808	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,28:30:64:0.438:2	0/1:10,20:29:30:0.667:2	0/1:0,10:30:10:1.00:2	0/1:35,27:30:62:0.435:2	./.	0/1:46,41:29:87:0.471:2	0/1:0,71:30:71:1.00:2	0/1:48,34:30:82:0.415:2	0/1:0,59:30:59:1.00:2	0/1:0,77:30:77:1.00:2	0/1:0,73:30:73:1.00:2
chr2	25384384	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:27:2:1.00:2
chr2	25462327	rs72810046	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,55:32:127:0.444:2	0/1:53,51:30:104:0.490:2	./.	./.	0/1:47,59:32:106:0.557:2	./.	./.	./.
chr2	25468155	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:32:76:0.053:2	./.	./.
chr2	25469502	rs2276598	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,19:30:33:0.594:2	0/1:12,11:29:23:0.478:2	./.	./.	0/1:1,43:30:44:0.977:2	./.	./.	./.
chr2	25523096	rs143730975	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,5:29:7:0.714:2	./.	./.	./.	./.
chr2	25536827	rs41284843	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	0/1:6,12:32:19:0.667:2	./.
chr2	25602142	rs2304426	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:31:29:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,5:26:5:1.00:2	0/1:27,24:31:51:0.471:2	0/1:34,29:31:63:0.460:2	0/1:0,54:31:54:1.00:2	0/1:46,32:32:78:0.410:2	0/1:0,71:31:71:1.00:2	0/1:37,27:32:64:0.422:2	0/1:20,16:30:36:0.444:2	./.
chr2	25655772	rs7583475	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:21,14:28:35:0.400:2	0/1:13,12:29:25:0.480:2	./.	./.	0/1:38,21:29:59:0.356:2	./.	0/1:28,24:30:52:0.462:2	./.	./.	0/1:13,9:31:22:0.409:2	0/1:0,47:30:47:1.00:2
chr2	25965862	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,3:34:44:0.068:2	./.	./.	./.	./.	./.	./.
chr2	25965982	rs62130126	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,83:33:164:0.506:2
chr2	25966393	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:153,4:32:157:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr2	25973060	rs33994557	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,92:31:192:0.479:2	./.	./.	./.	./.	./.	0/1:69,78:32:147:0.531:2	./.
chr2	26022277	rs34816614	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,87:33:182:0.478:2	./.	./.	./.	./.	./.	0/1:85,78:33:163:0.479:2	./.
chr2	26177198	rs17047211	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:30,25:31:55:0.455:2	0/1:12,8:32:20:0.400:2	./.	./.	./.	./.	0/1:36,41:31:77:0.532:2	./.	0/1:27,30:30:57:0.526:2	./.	./.
chr2	26203678	rs1465878	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,147:30:147:1.00:2	0/1:0,97:29:97:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,185:30:185:1.00:2	0/1:1,190:30:191:0.995:2	0/1:0,184:30:184:1.00:2	0/1:1,182:30:183:0.995:2	0/1:0,185:30:185:1.00:2	0/1:0,180:31:180:1.00:2	0/1:0,178:30:178:1.00:2	0/1:0,183:29:183:1.00:2
chr2	26204640	rs6721440	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,42:32:43:1.00:2	0/1:1,31:31:32:0.969:2	./.	0/1:32,33:32:65:0.508:2	0/1:27,35:31:62:0.565:2	0/1:24,45:31:69:0.652:2	0/1:1,51:31:52:0.981:2	./.	0/1:23,29:34:52:0.558:2	0/1:0,30:32:31:1.00:2	./.
chr2	26321526	rs11678157	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:31:27:1.00:2	0/1:0,20:30:20:1.00:2	0/1:5,5:30:10:0.500:2	0/1:28,17:30:45:0.378:2	0/1:0,29:29:29:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,47:30:47:1.00:2	0/1:35,32:32:67:0.478:2	0/1:0,51:31:51:1.00:2	0/1:34,41:31:75:0.547:2
chr2	26350787	rs61754189	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,57:33:110:0.518:2	./.	0/1:70,51:32:121:0.421:2
chr2	26399214	rs4665830	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,6:32:12:0.500:2	./.	./.	0/1:12,4:32:16:0.250:2	0/1:0,36:31:36:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,26:31:26:1.00:2	./.
chr2	26417472	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,6:32:76:0.079:2	./.	./.	./.	./.	./.
chr2	26417487	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:32:82:0.049:2	./.	./.	./.	./.	./.
chr2	26437996	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:33:125:0.032:2
chr2	26438001	rs147042247	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:34:113:0.035:2
chr2	26455127	rs11552518	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,7:30:22:0.318:2	./.	./.	./.	./.	./.	./.	0/1:29,15:31:44:0.341:2
chr2	26462021	rs144414842	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,45:32:90:0.500:2	./.	./.	./.	./.	./.
chr2	26500013	rs200718690	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:121,16:15:137:0.117:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,13:15:125:0.104:2	0/1:117,20:16:137:0.146:2
chr2	26501528	rs202174966	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:151,14:14:166:0.085:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,9:18:152:0.059:2	0/1:132,12:17:145:0.083:2
chr2	26501627	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:170,5:28:175:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr2	26502875	rs1056389	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,17:33:34:0.500:2	0/1:89,90:32:179:0.503:2	./.	./.	./.	./.	./.	./.	0/1:99,99:33:198:0.500:2
chr2	26505858	rs17528590	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,22:33:44:0.500:2	./.	./.	./.	./.	./.	./.	0/1:35,31:33:66:0.470:2
chr2	26507076	rs2303893	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,20:32:51:0.392:2	./.	./.	./.	./.	./.	./.	./.
chr2	26532443	rs72851588	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,20:32:66:0.303:2	./.	./.	./.	./.	./.	./.
chr2	26534322	rs74962505	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,61:30:136:0.449:2	./.	./.	./.	./.	./.	./.
chr2	26534801	rs7568529	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,83:30:84:0.988:2	0/1:2,52:31:54:0.963:2	0/1:0,17:29:17:1.00:2	0/1:72,71:30:143:0.497:2	0/1:83,54:29:137:0.394:2	0/1:0,145:30:145:1.00:2	0/1:0,123:30:123:1.00:2	0/1:2,165:29:167:0.988:2	0/1:1,132:31:133:0.992:2	./.	0/1:76,48:31:125:0.387:2
chr2	26534813	rs111756480	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,53:30:134:0.396:2	./.	./.	./.	./.	./.	./.
chr2	26534872	rs79413730	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,17:31:53:0.321:2	./.	./.	./.	./.	./.	./.
chr2	26535885	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,5:34:127:0.039:2
chr2	26536299	rs11886746	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,33:30:82:0.402:2	0/1:0,79:29:79:1.00:2	./.	./.	./.	./.	0/1:0,58:29:58:1.00:2	0/1:37,31:29:69:0.456:2
chr2	26536694	rs2052937	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:32:71:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,7:31:7:1.00:2	0/1:73,43:31:116:0.371:2	0/1:74,60:31:134:0.448:2	0/1:0,82:31:82:1.00:2	0/1:0,147:31:147:1.00:2	0/1:1,111:31:112:0.991:2	0/1:1,103:32:104:0.990:2	./.	0/1:44,34:32:79:0.436:2
chr2	26536727	rs74987785	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,41:30:100:0.410:2	./.	./.	./.	./.	./.	./.
chr2	26569029	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:31:72:0.056:2	./.	./.	./.	./.
chr2	26590084	rs6748996	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,39:31:90:0.433:2	0/1:21,22:31:43:0.512:2	0/1:9,5:29:14:0.357:2	0/1:64,53:32:117:0.453:2	0/1:42,26:32:68:0.382:2	./.	0/1:53,49:30:102:0.480:2	./.	./.	0/1:39,33:30:72:0.458:2	0/1:0,75:31:75:1.00:2
chr2	26606154	rs1109465	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,38:33:67:0.567:2	./.	./.	./.	./.	./.	./.	./.
chr2	26607992	rs934280	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:33:53:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,64:33:64:1.00:2	0/1:0,57:32:57:1.00:2
chr2	26647277	rs7423300	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,40:31:40:1.00:2	0/1:2,32:29:34:0.941:2	./.	0/1:40,29:30:69:0.420:2	0/1:0,29:31:29:1.00:2	0/1:0,35:30:35:1.00:2	0/1:1,29:31:30:0.967:2	0/1:0,51:29:51:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,60:29:60:1.00:2
chr2	26653457	rs4450561	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:106,66:32:172:0.384:2	0/1:60,82:31:142:0.577:2	0/1:0,15:32:15:1.00:2	0/1:183,4:32:187:0.021:2	0/1:2,132:32:134:0.985:2	0/1:109,73:31:183:0.401:2	0/1:94,80:31:174:0.460:2	0/1:2,187:32:189:0.989:2	0/1:2,189:32:191:0.990:2	0/1:2,162:32:164:0.988:2	./.
chr2	26667130	rs3795958	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,51:30:95:0.537:2	./.	./.	./.	./.	./.	./.	0/1:64,29:31:93:0.312:2
chr2	26667615	rs939820	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:31:53:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,40:30:40:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,73:30:73:1.00:2	0/1:1,75:30:76:0.987:2	0/1:0,61:31:61:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,55:31:55:1.00:2
chr2	26676293	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,13:31:64:0.203:2
chr2	26676322	rs1402962	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,74:33:74:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,57:32:57:1.00:2
chr2	26676395	rs12623642	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,25:32:80:0.313:2	./.	./.	./.	./.	./.	./.	./.
chr2	26679362	rs35313480	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,92:32:192:0.479:2	./.	./.	./.
chr2	26679394	rs1054737	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,12:30:17:0.706:2	./.	0/1:102,77:31:179:0.430:2	./.	./.	./.	./.	0/1:69,57:31:128:0.452:2	./.
chr2	26683777	rs45442103	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,64:31:151:0.427:2	./.	./.	./.
chr2	26693967	rs2272072	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,13:33:35:0.371:2	./.	./.	./.	./.	./.	./.	./.
chr2	26696374	rs56054534	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:35:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	26699126	rs4335905	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:15,13:32:28:0.464:2	0/1:5,6:31:11:0.545:2	./.	0/1:0,35:32:35:1.00:2	./.	./.	0/1:16,11:29:27:0.407:2	./.	0/1:25,10:31:35:0.286:2	./.	0/1:0,22:31:22:1.00:2
chr2	26699855	rs2272069	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:29,34:31:63:0.540:2	0/1:27,14:33:41:0.341:2	./.	0/1:0,89:32:89:1.00:2	./.	./.	0/1:84,81:32:165:0.491:2	./.	0/1:32,25:33:57:0.439:2	./.	0/1:0,47:32:47:1.00:2
chr2	26700084	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:32:62:0.065:2	./.	./.	./.
chr2	26700309	rs80356592	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,69:30:127:0.543:2	./.	./.
chr2	26700700	rs4665855	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,44:32:92:0.478:2	0/1:36,37:32:73:0.507:2	0/1:3,4:31:7:0.571:2	0/1:1,140:32:141:0.993:2	./.	./.	0/1:75,62:32:137:0.453:2	0/1:154,7:33:161:0.043:2	0/1:91,72:33:163:0.442:2	./.	0/1:0,139:32:139:1.00:2
chr2	26702409	rs61746988	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,55:31:99:0.556:2
chr2	26702508	rs72853741	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,28:29:47:0.596:2	./.	./.	./.	./.	./.
chr2	26703734	rs55676840	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,68:29:166:0.410:2	./.	./.	./.	./.	./.	./.
chr2	26712561	rs41288779	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,47:31:138:0.341:2	./.
chr2	26739423	rs11687696	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,3:26:12:0.250:2	0/1:0,26:30:26:1.00:2	./.	./.	./.	./.	./.
chr2	26741961	rs13031859	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,30:33:58:0.517:2	0/1:29,18:33:47:0.383:2	0/1:7,3:33:10:0.300:2	0/1:39,52:33:91:0.571:2	0/1:51,53:32:104:0.510:2	./.	./.	0/1:56,48:33:104:0.462:2	0/1:0,98:34:98:1.00:2	./.	0/1:0,72:33:72:1.00:2
chr2	26798893	rs13002673	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,35:31:84:0.417:2	0/1:76,53:30:130:0.411:2	0/1:54,38:30:92:0.413:2	0/1:94,65:31:159:0.409:2	./.	0/1:41,38:32:79:0.481:2	0/1:44,32:31:76:0.421:2	./.
chr2	26798927	rs112873448	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,60:29:109:0.550:2	./.	./.	./.	./.	./.	./.
chr2	26799031	rs2272464	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,19:31:44:0.432:2	0/1:35,24:31:59:0.407:2	0/1:26,21:32:47:0.447:2	0/1:30,36:32:66:0.545:2	./.	0/1:24,11:33:35:0.314:2	0/1:26,20:30:46:0.435:2	./.
chr2	26800422	rs1053807	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,22:33:53:0.415:2	0/1:10,13:32:23:0.565:2	0/1:8,5:32:13:0.385:2	0/1:41,37:33:78:0.474:2	0/1:44,53:32:97:0.546:2	0/1:40,36:32:76:0.474:2	0/1:45,43:32:88:0.489:2	0/1:65,47:32:112:0.420:2	0/1:24,33:33:57:0.579:2	./.	0/1:31,21:33:52:0.404:2
chr2	26804218	rs935171	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,14:29:14:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,24:29:24:1.00:2	0/1:0,42:28:42:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,20:27:20:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,22:29:22:1.00:2
chr2	26804247	rs935172	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,15:29:15:1.00:2	0/1:0,12:30:12:1.00:2	./.	./.	0/1:10,14:29:24:0.583:2	0/1:14,27:30:41:0.659:2	0/1:0,24:30:24:1.00:2	0/1:14,10:29:24:0.417:2	./.	0/1:0,19:29:19:1.00:2	0/1:18,11:31:29:0.379:2
chr2	26806717	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.	./.	./.
chr2	26846282	rs1615551	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,23:32:53:0.434:2	0/1:20,15:31:35:0.429:2	0/1:2,6:32:8:0.750:2	0/1:37,30:32:67:0.448:2	0/1:1,38:31:39:0.974:2	0/1:32,22:32:54:0.407:2	0/1:18,25:32:43:0.581:2	0/1:27,29:31:56:0.518:2	0/1:41,34:33:75:0.453:2	./.	./.
chr2	26846436	rs186918721	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,44:31:101:0.436:2	./.	./.	./.	./.	./.	./.	./.
chr2	27157489	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:30:59:0.068:2
chr2	27167617	rs41288789	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,23:31:50:0.460:2	0/1:10,8:29:18:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	27169842	rs11126784	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,90:30:91:1.00:2	0/1:0,49:31:49:1.00:2	0/1:9,11:31:20:0.550:2	./.	./.	0/1:68,64:30:132:0.485:2	0/1:0,144:30:144:1.00:2	0/1:0,139:30:139:1.00:2	0/1:1,119:31:120:0.992:2	0/1:0,86:30:86:1.00:2	0/1:0,99:30:99:1.00:2
chr2	27246285	rs10865456	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:33:41:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,56:31:56:1.00:2	0/1:1,62:32:63:0.984:2	0/1:0,28:32:28:1.00:2	0/1:0,49:32:50:1.00:2
chr2	27260469	rs1124649	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,8:32:17:0.471:2	0/1:2,135:31:137:0.985:2	0/1:0,93:31:93:1.00:2	./.	./.	0/1:80,45:31:125:0.360:2	./.	./.	./.
chr2	27261329	rs11690454	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:33:46:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,59:33:59:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,75:33:75:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,53:34:53:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,42:32:42:1.00:2
chr2	27262623	rs374406887	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,80:33:165:0.485:2
chr2	27290525	rs11681145	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:2,69:28:71:0.972:2	0/1:1,45:29:46:0.978:2	0/1:5,11:31:16:0.688:2	./.	./.	0/1:1,100:29:101:0.990:2	0/1:1,102:29:103:0.990:2	0/1:77,48:29:125:0.384:2	0/1:0,109:30:109:1.00:2	0/1:0,74:29:74:1.00:2	0/1:1,94:28:95:0.989:2
chr2	27303755	rs2736976	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,13:28:13:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,17:29:17:1.00:2	0/1:0,12:29:12:1.00:2	0/1:0,18:28:18:1.00:2	0/1:0,4:27:4:1.00:2	0/1:0,17:28:17:1.00:2	0/1:0,8:26:8:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,4:25:4:1.00:2
chr2	27308546	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,6:32:73:0.082:2	./.	./.	./.	./.	./.
chr2	27315252	rs2304681	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,37:30:37:1.00:2	0/1:0,88:31:88:1.00:2	./.	0/1:99,5:32:104:0.048:2	0/1:40,37:31:77:0.481:2	./.	./.	./.
chr2	27317792	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:30:44:0.091:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	27324289	rs1057393	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,3:33:39:0.077:2	./.	./.	./.	./.
chr2	27324303	rs113949888	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,3:30:27:0.111:2	./.	./.	./.	./.
chr2	27324320	rs111421729	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,3:33:25:0.120:2	./.	./.	./.	./.
chr2	27324340	rs11893427	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,5:32:13:0.385:2	0/1:9,6:32:15:0.400:2	./.	./.	0/1:12,4:22:16:0.250:2	0/1:6,7:33:13:0.538:2	0/1:15,5:31:20:0.250:2	0/1:13,4:34:17:0.235:2	./.	0/1:14,6:29:20:0.300:2	0/1:17,3:34:20:0.150:2
chr2	27324354	rs1057391	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:14,4:30:18:0.222:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,4:28:21:0.190:2	./.
chr2	27324669	rs61753362	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,28:32:50:0.560:2	./.	./.	./.	./.	./.	./.	./.
chr2	27324724	rs2384571	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,35:29:35:1.00:2	0/1:0,16:28:16:1.00:2	./.	0/1:26,3:32:29:0.103:2	./.	0/1:0,28:29:28:1.00:2	0/1:0,29:28:29:1.00:2	0/1:13,19:29:32:0.594:2	0/1:0,21:29:21:1.00:2	0/1:0,22:28:22:1.00:2	0/1:0,21:27:21:1.00:2
chr2	27324751	rs2384572	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,23:30:23:1.00:2	0/1:0,12:30:12:1.00:2	./.	0/1:13,3:32:16:0.188:2	./.	0/1:0,21:29:21:1.00:2	0/1:1,14:29:15:0.933:2	0/1:6,11:29:17:0.647:2	0/1:0,10:31:10:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,11:30:11:1.00:2
chr2	27351948	rs6715286	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:32:37:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,40:34:40:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,40:33:40:1.00:2
chr2	27353507	rs2304678	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,58:32:115:0.504:2	0/1:81,67:32:148:0.453:2	./.	./.	0/1:107,57:32:164:0.348:2	./.	./.	0/1:60,53:32:114:0.469:2
chr2	27355991	rs2289358	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,46:29:113:0.407:2	./.	./.	0/1:54,48:30:102:0.471:2	./.	./.	./.
chr2	27356548	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:33:76:0.053:2	./.
chr2	27361103	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,5:35:48:0.104:2
chr2	27361246	rs2304680	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,50:31:90:0.556:2	./.	./.	0/1:69,50:31:119:0.420:2	./.	./.	./.
chr2	27361418	rs62128708	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,88:31:172:0.515:2	0/1:45,49:31:94:0.521:2	./.	./.	./.	0/1:92,94:30:186:0.505:2	./.	./.	./.	./.	./.
chr2	27423913	rs61737373	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,50:31:101:0.495:2	./.	./.	0/1:67,55:32:122:0.451:2	./.	./.
chr2	27424636	rs1395	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,98:31:98:1.00:2	0/1:0,74:31:74:1.00:2	0/1:1,21:31:22:0.955:2	0/1:96,78:30:174:0.448:2	0/1:0,169:31:169:1.00:2	0/1:98,88:31:186:0.473:2	0/1:96,69:31:165:0.418:2	0/1:0,183:31:184:1.00:2	0/1:104,78:32:182:0.429:2	0/1:0,157:31:157:1.00:2	0/1:1,142:31:143:0.993:2
chr2	27426174	rs138663654	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:26,21:33:47:0.447:2	0/1:14,12:32:26:0.462:2	./.	./.	./.	./.	0/1:40,23:32:63:0.365:2	./.	./.	./.	./.
chr2	27428295	rs1275524	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,98:29:98:1.00:2	0/1:0,56:29:56:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,120:29:121:1.00:2	0/1:1,158:30:159:0.994:2	0/1:0,115:29:115:1.00:2	0/1:0,151:29:151:1.00:2	0/1:0,133:29:133:1.00:2	0/1:0,135:30:135:1.00:2	0/1:0,97:29:97:1.00:2	0/1:0,97:29:97:1.00:2
chr2	27428877	rs1275527	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,106:33:106:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,19:33:19:1.00:2	0/1:0,133:32:133:1.00:2	0/1:0,138:31:138:1.00:2	0/1:85,59:32:144:0.410:2	0/1:0,174:32:174:1.00:2	0/1:1,151:32:152:0.993:2	0/1:90,70:33:160:0.438:2	0/1:1,121:33:122:0.992:2	0/1:0,116:33:116:1.00:2
chr2	27430237	rs56970590	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,74:32:147:0.503:2	./.	./.	0/1:97,56:32:153:0.366:2	./.	./.
chr2	27435250	rs1275533	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:30:36:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,34:31:34:1.00:2
chr2	27438615	rs11556165	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,21:32:45:0.477:2	./.	./.	./.	./.	./.	./.	./.
chr2	27439453	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,5:30:183:0.027:2	./.	./.	./.	./.	./.
chr2	27439751	rs7437	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,71:30:144:0.493:2	./.	./.	0/1:79,51:31:130:0.392:2	./.	./.
chr2	27440785	rs1275536	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,100:32:100:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,20:32:20:1.00:2	0/1:1,120:32:121:0.992:2	0/1:0,111:32:111:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,116:32:116:1.00:2	0/1:0,143:32:143:1.00:2	0/1:0,113:33:113:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,125:32:125:1.00:2
chr2	27445518	rs60463044	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,29:33:58:0.500:2	./.	./.	0/1:13,12:34:25:0.480:2	./.	./.
chr2	27446888	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,3:33:42:0.071:2	./.
chr2	27456350	rs137930730	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,22:30:44:0.500:2	./.
chr2	27456638	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,4:31:97:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr2	27460968	rs1141313	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,59:30:132:0.447:2	./.	0/1:75,46:29:121:0.380:2	0/1:87,87:29:174:0.500:2	./.	0/1:61,71:31:132:0.538:2	./.	./.
chr2	27461936	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,4:32:113:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr2	27462076	rs3739092	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,23:32:50:0.460:2	./.	./.	0/1:22,31:32:53:0.585:2	./.	./.	./.	./.
chr2	27462218	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.
chr2	27462651	rs61741874	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,23:33:46:0.500:2	./.	./.	0/1:31,25:34:56:0.446:2	./.	./.
chr2	27505758	rs33994928	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,44:32:100:0.440:2	./.	0/1:4,89:32:93:0.957:2
chr2	27550967	rs1049817	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,45:33:114:0.395:2	./.	0/1:74,49:32:123:0.398:2	0/1:74,37:33:112:0.333:2	./.	./.	0/1:55,37:33:92:0.402:2	./.
chr2	27558210	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:31:96:0.042:2	./.
chr2	27558252	rs11684134	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,67:33:128:0.523:2	./.	0/1:67,67:32:134:0.500:2	0/1:57,68:31:125:0.544:2	./.	0/1:80,47:33:128:0.370:2	0/1:52,72:33:124:0.581:2	./.
chr2	27587447	rs148810263	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,44:32:82:0.537:2	./.	./.	./.
chr2	27587724	rs1058065	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,39:31:93:0.419:2	./.	./.	./.	./.	./.
chr2	27590666	rs41288829	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,45:32:105:0.429:2	0/1:30,33:31:63:0.524:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	27594142	rs147740391	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,32:33:64:0.500:2	./.	./.
chr2	27597951	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,5:32:72:0.069:2	./.	./.	./.	./.	./.	./.
chr2	27601612	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:32:174:0.023:2	./.	./.	./.	./.
chr2	27601656	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:33:105:0.038:2	./.
chr2	27665518	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	27665531	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	27667297	rs11541994	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,5:26:16:0.313:2	./.	0/1:8,6:29:14:0.429:2	0/1:9,9:29:18:0.500:2	./.	./.	0/1:11,7:26:18:0.389:2	./.
chr2	27668687	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:107,6:30:113:0.053:2	./.	./.	./.	./.	./.	./.
chr2	27670409	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:32:90:0.044:2	./.
chr2	27676287	rs56076827	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,42:33:100:0.420:2	./.	0/1:44,39:32:83:0.470:2	0/1:42,33:32:75:0.440:2	./.	./.	0/1:40,37:33:77:0.481:2	./.
chr2	27682276	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:31:117:0.034:2	./.	./.
chr2	27712538	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:32:134:0.030:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	27715595	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:31:98:0.041:2	./.	./.
chr2	27717447	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:30:61:0.066:2	./.	./.	./.	./.
chr2	27730940	rs1260326	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,6:29:15:0.400:2	0/1:0,108:27:109:1.00:2	0/1:0,100:26:100:1.00:2	0/1:0,123:28:123:1.00:2	0/1:58,60:27:120:0.508:2	./.	0/1:61,56:28:117:0.479:2	0/1:0,81:28:81:1.00:2	./.
chr2	27745373	rs8179249	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,26:30:54:0.481:2	./.	./.	./.
chr2	27789861	rs965813	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,24:32:49:0.490:2	0/1:20,21:30:41:0.512:2	0/1:19,22:31:41:0.537:2	./.	./.	0/1:24,23:32:47:0.489:2	0/1:20,14:30:34:0.412:2	./.
chr2	27799643	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:33:171:0.023:2	./.	./.
chr2	27801403	rs1919125	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:77,79:33:156:0.506:2	0/1:53,42:32:95:0.442:2	0/1:0,17:33:17:1.00:2	0/1:112,52:33:164:0.317:2	0/1:94,57:32:151:0.377:2	0/1:98,72:32:170:0.424:2	0/1:77,46:32:123:0.374:2	0/1:3,188:32:191:0.984:2	0/1:4,174:33:178:0.978:2	0/1:78,62:33:140:0.443:2	0/1:0,188:33:188:1.00:2
chr2	27801418	rs1919126	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:75,77:32:152:0.507:2	0/1:56,41:32:97:0.423:2	0/1:0,17:31:17:1.00:2	0/1:106,54:32:160:0.338:2	0/1:95,52:32:147:0.354:2	0/1:101,70:31:171:0.409:2	0/1:75,42:32:117:0.359:2	0/1:4,171:32:175:0.977:2	0/1:3,168:32:171:0.982:2	0/1:75,56:32:131:0.427:2	0/1:0,176:32:176:1.00:2
chr2	27801493	rs1919127	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:47,50:30:97:0.515:2	0/1:29,15:28:44:0.341:2	0/1:5,5:28:10:0.500:2	./.	./.	./.	0/1:29,30:29:60:0.508:2	0/1:1,83:29:85:0.988:2	0/1:59,36:31:95:0.379:2	./.	0/1:1,84:28:85:0.988:2
chr2	27801759	rs1919128	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:32,24:33:56:0.429:2	0/1:19,28:32:47:0.596:2	0/1:1,4:33:5:0.800:2	./.	./.	./.	0/1:10,13:33:23:0.565:2	0/1:0,54:32:54:1.00:2	0/1:36,29:34:65:0.446:2	./.	0/1:0,78:33:78:1.00:2
chr2	27802805	rs3811644	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,7:32:13:0.538:2	0/1:35,30:33:65:0.462:2	0/1:42,33:32:75:0.440:2	0/1:60,46:32:106:0.434:2	./.	./.	0/1:68,54:33:122:0.443:2	0/1:60,37:33:97:0.381:2	./.
chr2	27802920	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:31:128:0.031:2	./.	./.	./.
chr2	27803691	rs368798497	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:31:52:0.077:2
chr2	27804432	rs28381983	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,13:32:41:0.317:2	0/1:11,10:33:21:0.476:2	0/1:0,3:31:3:1.00:2	0/1:21,17:31:38:0.447:2	0/1:28,16:32:44:0.364:2	0/1:30,9:32:39:0.231:2	0/1:17,14:33:31:0.452:2	0/1:0,46:33:46:1.00:2	0/1:1,34:33:35:0.971:2	0/1:13,17:31:30:0.567:2	0/1:0,27:33:27:1.00:2
chr2	27806003	rs190771676	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,6:32:69:0.087:2
chr2	27838058	rs11127071	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,56:30:90:0.622:2	0/1:33,24:31:57:0.421:2	0/1:0,13:30:13:1.00:2	0/1:50,78:30:128:0.609:2	0/1:17,37:30:54:0.685:2	0/1:45,60:30:105:0.571:2	0/1:29,38:30:67:0.567:2	0/1:0,83:31:83:1.00:2	0/1:0,140:31:141:1.00:2	0/1:60,35:30:95:0.368:2	0/1:0,122:30:122:1.00:2
chr2	27850236	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,5:28:138:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	27850344	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:33:133:0.030:2	./.	./.
chr2	27851615	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.
chr2	27851918	rs3749147	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:36,32:31:68:0.471:2	0/1:16,22:31:38:0.579:2	./.	./.	./.	./.	0/1:31,43:29:74:0.581:2	0/1:1,57:30:58:0.983:2	0/1:21,39:32:60:0.650:2	./.	0/1:1,43:31:44:0.977:2
chr2	27853899	rs183551437	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:32:16:0.563:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	27854721	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:33:183:0.022:2
chr2	27862909	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:31:160:0.025:2	./.	./.	./.	./.
chr2	27887034	rs9678851	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,21:31:44:0.488:2	0/1:15,11:32:26:0.423:2	./.	0/1:32,27:30:59:0.458:2	0/1:28,33:30:61:0.541:2	0/1:14,31:30:45:0.689:2	0/1:22,21:31:43:0.488:2	./.	0/1:22,15:29:37:0.405:2	0/1:15,27:29:42:0.643:2	0/1:0,63:30:63:1.00:2
chr2	27905215	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:32:91:0.044:2	./.	./.	./.
chr2	27905222	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:34:79:0.051:2	./.	./.	./.
chr2	27930519	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:31:147:0.027:2
chr2	27930837	rs4665385	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,9:28:21:0.429:2	./.	0/1:4,18:29:22:0.818:2	./.	./.	./.	0/1:7,7:28:14:0.500:2	./.
chr2	27931209	rs181640002	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:27,23:33:50:0.460:2	0/1:21,15:32:36:0.417:2	./.	./.	./.	./.	0/1:35,22:32:57:0.386:2	./.	./.	./.	./.
chr2	27931323	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,3:31:27:0.111:2	./.	./.	./.	./.	./.	./.
chr2	28081433	rs184414342	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,9:32:31:0.290:2	./.	./.	./.	./.	./.	./.
chr2	28113157	rs113651030	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,28:33:69:0.412:2	./.	./.	./.
chr2	28634790	rs12624279	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,39:32:74:0.527:2	0/1:27,30:32:57:0.526:2	./.	0/1:59,62:31:121:0.512:2	0/1:61,45:31:106:0.425:2	0/1:1,122:31:123:0.992:2	./.	./.	./.	./.	./.
chr2	28748838	rs72792970	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,45:31:140:0.321:2	./.
chr2	28761981	rs6753929	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,39:32:109:0.358:2	./.	0/1:112,57:33:169:0.337:2	./.	./.	./.
chr2	28763230	rs79986357	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,17:31:35:0.486:2	./.	./.	./.	./.	./.	./.	./.
chr2	28789643	rs10186460	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:49,37:32:86:0.430:2	0/1:25,17:31:42:0.405:2	0/1:10,3:32:13:0.231:2	./.	./.	0/1:76,38:31:114:0.333:2	0/1:62,52:32:114:0.456:2	0/1:81,45:31:126:0.357:2	0/1:0,92:33:92:1.00:2	./.	0/1:2,90:32:92:0.978:2
chr2	28804962	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:32:165:0.024:2	./.	./.	./.	./.	./.
chr2	28814033	rs11681826	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:36,43:29:79:0.544:2	0/1:24,16:30:40:0.400:2	./.	0/1:74,37:28:111:0.333:2	./.	./.	./.	0/1:89,63:29:152:0.414:2	./.	./.	0/1:39,36:28:75:0.480:2
chr2	28814548	rs12464271	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:22,16:30:38:0.421:2	./.	./.	0/1:15,17:30:32:0.531:2	./.	./.	./.	0/1:27,9:29:36:0.250:2	./.	./.	0/1:18,20:31:38:0.526:2
chr2	28821613	rs35746006	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,47:33:90:0.522:2	./.	./.
chr2	28824793	rs7601771	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,46:31:89:0.517:2	0/1:33,33:32:66:0.500:2	./.	0/1:66,50:33:116:0.431:2	0/1:2,92:32:94:0.979:2	./.	0/1:84,44:32:128:0.344:2	0/1:102,72:33:174:0.414:2	0/1:88,65:33:153:0.425:2	0/1:68,42:33:110:0.382:2	0/1:63,46:33:109:0.422:2
chr2	28827533	rs146023795	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:30:11:0.545:2	./.	./.	0/1:70,61:31:131:0.466:2	./.	./.	./.	./.	./.
chr2	28827625	rs34289907	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,68:32:163:0.417:2	./.	./.
chr2	28841245	rs201645442	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,16:32:24:0.667:2	0/1:12,4:33:16:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	28854958	rs2199619	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:55,43:32:98:0.439:2	0/1:33,25:31:58:0.431:2	./.	0/1:74,52:31:126:0.413:2	0/1:88,58:31:146:0.397:2	./.	./.	0/1:87,75:32:162:0.463:2	./.	./.	0/1:63,39:32:102:0.382:2
chr2	28855840	rs3752902	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,28:32:100:0.280:2	./.	0/1:66,51:32:117:0.436:2	./.	./.	./.	./.
chr2	28855865	rs370874715	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,43:31:84:0.512:2
chr2	28865760	rs2272387	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,35:32:65:0.538:2	0/1:15,24:31:39:0.615:2	./.	0/1:40,43:32:83:0.518:2	0/1:0,46:31:46:1.00:2	./.	0/1:46,26:32:72:0.361:2	0/1:58,41:32:99:0.414:2	0/1:40,29:32:69:0.420:2	./.	0/1:36,32:32:68:0.471:2
chr2	29001216	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:34:56:0.071:2	./.	./.
chr2	29001691	rs1128416	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:20,16:33:36:0.444:2	0/1:5,11:33:16:0.688:2	0/1:0,2:35:2:1.00:2	./.	0/1:11,15:32:26:0.577:2	0/1:11,11:31:22:0.500:2	0/1:0,19:33:19:1.00:2	0/1:16,15:33:31:0.484:2	0/1:22,27:34:49:0.551:2	./.	0/1:40,18:32:58:0.310:2
chr2	29045243	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:160,4:33:165:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr2	29092646	rs143187215	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,32:31:68:0.471:2	./.	./.
chr2	29092679	rs4233729	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:37,25:32:62:0.403:2	0/1:28,9:32:37:0.243:2	./.	0/1:2,42:32:44:0.955:2	0/1:15,14:33:29:0.483:2	0/1:22,28:32:50:0.560:2	./.	0/1:43,18:33:62:0.295:2	0/1:33,40:34:73:0.548:2	./.	0/1:33,50:31:83:0.602:2
chr2	29092850	rs4666122	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,20:29:53:0.377:2	0/1:10,12:28:22:0.545:2	./.	0/1:2,40:30:43:0.952:2	0/1:26,24:29:51:0.480:2	0/1:26,21:28:47:0.447:2	./.	0/1:31,21:29:52:0.404:2	0/1:30,22:29:52:0.423:2	./.	0/1:31,22:29:53:0.415:2
chr2	29093121	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,20:32:30:0.667:2	./.	./.
chr2	29124938	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:33:143:0.028:2	./.
chr2	29129418	rs11688605	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,28:32:85:0.329:2	0/1:14,12:33:26:0.462:2	./.	./.	./.	0/1:59,31:33:90:0.344:2	./.	0/1:68,44:32:112:0.393:2	0/1:47,29:33:76:0.382:2	./.	./.
chr2	29135468	rs6715296	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,148:32:148:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,22:32:22:1.00:2	./.	0/1:0,132:31:133:1.00:2	0/1:0,169:32:169:1.00:2	0/1:0,167:32:167:1.00:2	0/1:118,75:32:193:0.389:2	0/1:0,192:33:193:1.00:2	0/1:0,191:32:191:1.00:2	0/1:94,92:31:186:0.495:2
chr2	29152456	rs1140697	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,55:32:100:0.550:2	0/1:17,27:32:44:0.614:2	0/1:0,5:33:5:1.00:2	0/1:0,106:33:106:1.00:2	0/1:0,76:32:76:1.00:2	0/1:63,76:32:139:0.547:2	0/1:0,92:33:92:1.00:2	0/1:58,43:33:101:0.426:2	0/1:67,69:34:136:0.507:2	0/1:0,84:33:84:1.00:2	0/1:73,70:34:144:0.490:2
chr2	29169612	rs3087649	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,18:32:18:1.00:2	0/1:0,20:33:20:1.00:2	./.	./.	0/1:0,15:31:15:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,11:33:11:1.00:2	0/1:2,4:32:6:0.667:2	0/1:0,11:34:11:1.00:2	0/1:0,14:31:14:1.00:2	0/1:6,14:33:20:0.700:2
chr2	29221040	rs72786173	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,61:31:117:0.521:2	./.	./.	./.	./.	./.	0/1:43,52:31:96:0.547:2
chr2	29222070	rs13009279	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,58:31:58:1.00:2	./.	./.	0/1:42,20:30:62:0.323:2	0/1:2,85:31:87:0.977:2	./.	./.	./.
chr2	29225502	rs72786178	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,16:28:34:0.471:2	0/1:14,11:28:25:0.440:2	./.	./.	./.	0/1:31,26:30:57:0.456:2	./.	./.	./.	./.	./.
chr2	29225504	rs72786179	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,17:32:35:0.486:2	0/1:15,11:30:26:0.423:2	./.	./.	./.	0/1:29,26:32:55:0.473:2	./.	./.	./.	./.	./.
chr2	29226498	rs12613325	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,43:31:89:0.483:2	0/1:30,23:30:53:0.434:2	0/1:7,7:31:14:0.500:2	0/1:0,119:30:119:1.00:2	0/1:0,99:31:99:1.00:2	0/1:73,51:29:124:0.411:2	0/1:0,101:30:101:1.00:2	0/1:4,113:30:117:0.966:2	0/1:78,56:32:134:0.418:2	0/1:0,94:31:94:1.00:2	0/1:54,46:31:100:0.460:2
chr2	29226512	rs12623297	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,82:30:82:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,15:31:15:1.00:2	./.	0/1:0,87:30:87:1.00:2	0/1:0,111:30:111:1.00:2	0/1:0,92:30:92:1.00:2	0/1:2,101:29:104:0.981:2	0/1:74,47:30:121:0.388:2	0/1:0,79:30:79:1.00:2	0/1:55,39:30:94:0.415:2
chr2	29240060	rs11127202	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,140:30:141:0.993:2	./.	./.	./.	0/1:1,157:30:158:0.994:2	./.	./.	./.
chr2	29240673	rs35166194	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,190:32:191:0.995:2	./.	./.	./.	0/1:2,185:32:187:0.989:2	./.	./.	./.
chr2	29240686	rs34261417	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,178:32:180:0.989:2	./.	./.	./.	0/1:2,188:32:190:0.989:2	./.	./.	./.
chr2	29240783	rs1109758	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,14:30:46:0.304:2	0/1:10,16:27:26:0.615:2	0/1:1,2:31:3:0.667:2	0/1:1,35:29:36:0.972:2	./.	0/1:27,22:30:49:0.449:2	./.	0/1:1,38:30:39:0.974:2	./.	./.	./.
chr2	29245951	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:35:168:0.024:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	29246044	rs6721861	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:62,58:27:120:0.483:2	0/1:39,32:28:71:0.451:2	0/1:10,8:30:18:0.444:2	./.	0/1:87,66:27:153:0.431:2	0/1:75,59:28:134:0.440:2	0/1:94,74:28:168:0.440:2	./.	0/1:72,48:29:120:0.400:2	0/1:63,53:28:117:0.457:2	0/1:59,49:28:108:0.454:2
chr2	29247100	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,4:32:102:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr2	29249839	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:32:136:0.029:2	./.	./.	./.
chr2	29256374	rs60403047	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,46:32:104:0.442:2	0/1:25,27:33:52:0.519:2	./.	./.	./.	0/1:79,86:32:165:0.521:2	./.	./.	./.	./.	./.
chr2	29259543	rs72788155	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,77:33:152:0.507:2	./.	./.	./.	./.	./.
chr2	29274720	rs895591	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,26:29:55:0.481:2	0/1:20,22:30:42:0.524:2	0/1:0,7:32:7:1.00:2	0/1:44,60:30:104:0.577:2	0/1:57,55:30:112:0.491:2	0/1:0,97:30:97:1.00:2	./.	0/1:61,50:30:112:0.450:2	./.	0/1:0,73:29:73:1.00:2	./.
chr2	29274730	rs7577483	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,24:28:50:0.480:2	0/1:17,18:30:35:0.514:2	./.	./.	./.	0/1:47,38:27:85:0.447:2	./.	./.	./.	./.	./.
chr2	29287803	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:31:82:0.049:2	./.
chr2	29294239	rs144569618	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,29:32:51:0.569:2	./.
chr2	29294629	rs34253433	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,41:30:76:0.539:2	0/1:14,24:31:38:0.632:2	./.	0/1:53,42:30:96:0.442:2	0/1:42,29:29:71:0.408:2	./.	./.	0/1:52,38:31:90:0.422:2	0/1:2,90:31:92:0.978:2	0/1:43,34:30:77:0.442:2	0/1:34,37:31:72:0.521:2
chr2	29294754	rs17744093	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,35:33:70:0.500:2	0/1:25,18:32:43:0.419:2	./.	0/1:46,28:32:74:0.378:2	0/1:27,15:31:42:0.357:2	./.	./.	0/1:40,32:32:72:0.444:2	0/1:0,72:33:72:1.00:2	0/1:30,32:32:62:0.516:2	0/1:41,25:33:66:0.379:2
chr2	29295016	rs10200693	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:66,73:30:139:0.525:2	0/1:39,38:29:77:0.494:2	./.	0/1:85,68:30:153:0.444:2	0/1:88,70:29:158:0.443:2	./.	./.	0/1:81,74:30:155:0.477:2	0/1:2,142:30:144:0.986:2	0/1:75,88:29:163:0.540:2	0/1:87,79:30:166:0.476:2
chr2	29295045	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.	./.	./.
chr2	29295186	rs75276619	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,16:30:43:0.372:2	./.	./.	./.	./.	./.	./.
chr2	29295334	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,30:32:59:0.508:2
chr2	29295676	rs13385188	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:63,58:32:121:0.479:2	0/1:72,64:31:136:0.471:2	./.	0/1:77,88:31:165:0.533:2	0/1:67,59:30:126:0.468:2	./.	./.	0/1:75,87:31:162:0.537:2	0/1:1,167:32:168:0.994:2	0/1:62,64:31:126:0.508:2	0/1:80,62:31:142:0.437:2
chr2	29296870	rs62132765	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:116,71:32:187:0.380:2	0/1:96,67:32:163:0.411:2	./.	0/1:113,84:31:197:0.426:2	0/1:103,83:31:186:0.446:2	./.	./.	0/1:121,78:31:199:0.392:2	0/1:1,194:32:195:0.995:2	0/1:88,88:31:176:0.500:2	0/1:91,78:32:169:0.462:2
chr2	29297068	rs35929540	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,29:32:55:0.527:2	0/1:13,25:32:38:0.658:2	./.	0/1:45,18:31:63:0.286:2	0/1:27,25:30:52:0.481:2	./.	./.	0/1:48,31:30:79:0.392:2	0/1:0,50:32:50:1.00:2	0/1:26,16:31:42:0.381:2	0/1:27,44:32:71:0.620:2
chr2	29356567	rs17749904	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:32:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	29356669	rs3100232	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,55:31:55:1.00:2	0/1:0,33:31:33:1.00:2	./.	0/1:33,16:32:49:0.327:2	0/1:0,34:31:34:1.00:2	0/1:43,28:30:71:0.394:2	./.	0/1:1,53:30:54:0.981:2	0/1:0,58:30:58:1.00:2	0/1:40,16:30:56:0.286:2	0/1:45,35:30:80:0.438:2
chr2	29366646	rs35024908	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,52:31:119:0.437:2	./.	./.	./.	./.	./.	./.
chr2	29383256	rs3100246	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,24:32:53:0.453:2	0/1:23,18:33:41:0.439:2	./.	0/1:33,39:32:72:0.542:2	0/1:27,14:32:41:0.341:2	./.	./.	0/1:38,22:32:60:0.367:2	0/1:4,82:33:86:0.953:2	0/1:39,33:32:72:0.458:2	0/1:50,37:31:87:0.425:2
chr2	29416366	rs1881421	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,12:32:33:0.364:2	./.	0/1:90,73:32:163:0.448:2	0/1:119,66:32:185:0.357:2	./.	./.	./.	0/1:107,89:33:196:0.454:2	./.
chr2	29416481	rs1881420	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,76:33:170:0.447:2	./.	./.	./.	0/1:79,106:33:185:0.573:2	./.
chr2	29416572	rs1670283	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,83:31:83:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,84:30:84:1.00:2	0/1:0,81:31:81:1.00:2	0/1:0,86:31:86:1.00:2	0/1:0,101:31:101:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,68:31:68:1.00:2	0/1:0,97:31:97:1.00:2
chr2	29416615	rs56132472	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	0/1:36,23:29:59:0.390:2	./.	./.	./.	./.	./.	./.
chr2	29444076	rs1534545	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,74:30:132:0.561:2	./.	./.	./.	0/1:70,59:30:129:0.457:2	./.
chr2	29444095	rs1569156	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,90:30:90:1.00:2	0/1:0,75:30:75:1.00:2	0/1:0,93:30:93:1.00:2	0/1:0,77:31:77:1.00:2	0/1:1,80:30:81:0.988:2	0/1:0,97:31:97:1.00:2	0/1:0,87:31:87:1.00:2	0/1:0,86:31:86:1.00:2
chr2	29445458	rs3795850	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,21:31:58:0.362:2	./.	./.	./.	0/1:34,15:32:50:0.306:2	./.
chr2	29448410	rs200992945	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,11:24:53:0.208:2	./.	0/1:24,9:27:33:0.273:2	0/1:39,10:26:49:0.204:2	0/1:34,8:24:42:0.190:2	0/1:32,5:25:37:0.135:2	./.
chr2	29449819	rs2293563	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,42:32:103:0.408:2	0/1:25,23:32:50:0.479:2	0/1:12,12:33:24:0.500:2	0/1:72,77:33:149:0.517:2	./.	./.	0/1:79,114:32:193:0.591:2	./.	0/1:98,64:33:162:0.395:2	./.	0/1:44,61:33:105:0.581:2
chr2	29455267	rs2256740	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,49:29:50:0.980:2	0/1:0,22:30:22:1.00:2	0/1:4,4:30:8:0.500:2	0/1:39,37:31:76:0.487:2	./.	0/1:0,65:31:65:1.00:2	0/1:2,83:30:85:0.976:2	0/1:53,23:30:76:0.303:2	0/1:0,81:31:81:1.00:2	0/1:33,31:31:64:0.484:2	0/1:32,25:30:57:0.439:2
chr2	29497967	rs35228363	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:71,75:30:146:0.514:2	0/1:42,23:31:66:0.354:2	./.	./.	./.	./.	./.	./.	./.	0/1:47,42:30:89:0.472:2	./.
chr2	29543663	rs2293564	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,105:32:106:1.00:2	0/1:0,67:31:67:1.00:2	0/1:11,4:32:15:0.267:2	0/1:92,81:32:173:0.468:2	./.	0/1:113,71:31:184:0.386:2	0/1:4,175:32:179:0.978:2	0/1:0,164:32:164:1.00:2	0/1:0,146:33:146:1.00:2	0/1:0,126:32:126:1.00:2	0/1:1,136:32:137:0.993:2
chr2	29543699	rs56165377	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,61:32:119:0.513:2	./.
chr2	29754862	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:32:137:0.029:2	./.	./.	./.	./.	./.
chr2	29940529	rs2246745	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,146:31:146:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,16:31:16:1.00:2	0/1:105,81:31:186:0.435:2	0/1:0,149:31:149:1.00:2	0/1:0,184:31:184:1.00:2	0/1:1,141:31:142:0.993:2	0/1:2,174:32:176:0.989:2	0/1:1,180:32:181:0.994:2	0/1:115,73:31:188:0.388:2	0/1:0,177:31:177:1.00:2
chr2	30143499	rs4358080	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	30381505	rs1137288	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,88:30:90:0.978:2	0/1:0,83:30:83:1.00:2	./.	./.	./.	0/1:70,56:30:126:0.444:2	0/1:68,75:29:143:0.524:2	0/1:72,98:30:170:0.576:2	0/1:72,79:31:151:0.523:2	./.	./.
chr2	30454631	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:29:95:0.042:2	./.	./.	./.	./.	./.
chr2	30863092	rs12467646	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,37:31:79:0.468:2	./.	./.	0/1:1,61:32:62:0.984:2	./.	./.	./.	./.
chr2	30863108	rs12471868	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,37:33:78:0.474:2	./.	./.	0/1:2,67:33:69:0.971:2	./.	./.	./.	./.
chr2	30957326	rs2276568	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,29:32:80:0.363:2	0/1:24,15:33:39:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	30957344	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:31:97:0.041:2	./.	./.	./.
chr2	30959366	rs11889549	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,7:33:9:0.778:2	./.	./.	./.	./.	./.	0/1:44,19:33:63:0.302:2	./.	./.
chr2	30975961	rs62142192	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,52:31:119:0.437:2	./.	./.	./.	0/1:0,112:32:112:1.00:2	./.
chr2	30976058	rs2926304	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:32,33:33:65:0.508:2	0/1:10,23:32:33:0.697:2	./.	0/1:41,14:32:55:0.255:2	./.	0/1:32,22:32:54:0.407:2	./.	./.	0/1:44,16:32:61:0.267:2	./.	./.
chr2	30980940	rs508405	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,10:28:29:0.345:2	0/1:7,6:31:13:0.462:2	0/1:0,4:31:4:1.00:2	0/1:6,18:31:24:0.750:2	./.	0/1:11,15:31:26:0.577:2	0/1:16,14:31:30:0.467:2	0/1:16,11:31:27:0.407:2	0/1:0,29:31:29:1.00:2	./.	0/1:9,13:30:22:0.591:2
chr2	31135184	rs2288101	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:31:20:1.00:2	0/1:0,12:32:12:1.00:2	0/1:4,6:31:10:0.600:2	0/1:27,24:31:51:0.471:2	0/1:22,10:32:32:0.313:2	0/1:25,8:30:33:0.242:2	0/1:17,16:31:33:0.485:2	0/1:18,19:31:37:0.514:2	./.	0/1:24,18:32:42:0.429:2	./.
chr2	31178818	rs2288100	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:32:9:0.556:2	./.	./.	0/1:64,50:31:114:0.439:2	./.	0/1:63,40:31:103:0.388:2	0/1:50,42:32:92:0.457:2	./.	0/1:48,34:32:82:0.415:2
chr2	31399988	rs4592896	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:52,61:32:113:0.540:2	0/1:28,38:31:66:0.576:2	./.	./.	./.	./.	0/1:59,56:31:115:0.487:2	0/1:57,70:31:127:0.551:2	./.	0/1:59,41:32:100:0.410:2	0/1:55,55:31:110:0.500:2
chr2	31409328	rs371139161	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,31:32:73:0.425:2	0/1:35,15:33:50:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	31410653	rs7422120	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:38,22:31:60:0.367:2	0/1:14,20:33:34:0.588:2	./.	./.	./.	./.	0/1:13,27:33:40:0.675:2	0/1:37,39:32:76:0.513:2	./.	0/1:29,27:32:56:0.482:2	0/1:49,23:32:73:0.319:2
chr2	31411184	rs1465972	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:17,16:32:33:0.485:2	0/1:10,3:32:13:0.231:2	./.	./.	./.	./.	0/1:10,8:30:18:0.444:2	0/1:21,22:32:43:0.512:2	./.	0/1:7,16:32:23:0.696:2	0/1:26,11:33:37:0.297:2
chr2	31411242	rs1465973	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:10,8:31:18:0.444:2	0/1:4,4:32:8:0.500:2	./.	./.	./.	./.	./.	0/1:11,4:30:15:0.267:2	./.	0/1:6,9:31:15:0.600:2	0/1:23,11:32:34:0.324:2
chr2	31414223	rs13408524	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:3,9:28:12:0.750:2	0/1:6,4:30:10:0.400:2	./.	./.	./.	./.	0/1:17,4:31:21:0.190:2	0/1:4,6:30:10:0.600:2	./.	0/1:6,5:28:11:0.455:2	0/1:9,10:28:19:0.526:2
chr2	31414807	rs1562022	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,18:32:42:0.439:2	0/1:14,15:31:29:0.517:2	0/1:0,6:33:6:1.00:2	0/1:0,83:33:83:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,74:33:74:1.00:2	0/1:50,42:32:92:0.457:2	0/1:0,52:34:52:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,36:32:36:1.00:2
chr2	31414851	rs7587515	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:30,30:30:60:0.500:2	0/1:17,20:30:37:0.541:2	./.	./.	./.	./.	./.	0/1:64,64:30:128:0.500:2	./.	./.	./.
chr2	31414885	rs369708091	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,47:30:102:0.461:2	./.	./.	./.	./.	./.
chr2	31417290	rs76523220	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,14:33:33:0.424:2	0/1:6,4:32:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	31423365	rs111554796	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,37:31:101:0.366:2	./.	./.	./.	./.	./.
chr2	31423443	rs17011001	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:48,34:33:82:0.415:2	0/1:25,28:32:53:0.528:2	./.	./.	./.	./.	0/1:71,50:32:121:0.413:2	./.	./.	0/1:29,34:32:63:0.540:2	./.
chr2	31562412	rs207440	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,44:31:97:0.454:2	./.	./.	./.
chr2	31571786	rs1884725	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,49:33:49:1.00:2	./.	0/1:0,54:33:54:1.00:2	0/1:2,23:32:25:0.920:2	0/1:1,52:32:53:0.981:2	0/1:32,18:32:50:0.360:2	0/1:22,30:33:52:0.577:2	0/1:53,47:33:100:0.470:2
chr2	31589836	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:33:184:0.022:2	./.	./.	./.	./.
chr2	31589847	rs2295475	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,90:32:92:0.978:2	0/1:0,42:32:42:1.00:2	./.	./.	./.	0/1:2,109:31:111:0.982:2	./.	0/1:71,56:32:127:0.441:2	./.	./.	./.
chr2	31590917	rs17011368	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,45:32:84:0.536:2	./.	./.	./.	./.	./.	./.
chr2	31593265	rs17323225	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,24:31:51:0.471:2	./.	./.	./.	./.	./.	./.
chr2	31596731	rs17395224	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,11:32:40:0.275:2	./.	./.	./.	./.	./.	./.
chr2	31600017	rs45471294	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,104:31:181:0.575:2
chr2	31606670	rs4407290	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,55:31:127:0.433:2	./.	./.	./.
chr2	31611143	rs45523133	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,41:32:85:0.482:2	./.	./.	./.
chr2	31758822	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:31:53:0.075:2	./.	./.
chr2	31805706	rs523349	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	0/1:0,2:30:2:1.00:2	./.	./.	0/1:0,3:29:3:1.00:2	./.	./.	./.
chr2	31806031	rs632148	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.
chr2	32093496	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:134,6:33:140:0.043:2	0/1:30,5:31:35:0.143:2	./.	./.	0/1:141,12:32:153:0.078:2	0/1:116,35:32:151:0.232:2	./.	0/1:140,41:32:181:0.227:2	./.	0/1:163,13:32:178:0.074:2
chr2	32117125	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:31:104:0.038:2	./.	./.	./.	./.	./.
chr2	32340779	rs145264166	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,14:31:32:0.438:2	./.	./.	./.	0/1:36,19:33:55:0.345:2	./.	./.
chr2	32449832	rs61754192	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,7:30:15:0.467:2	./.	./.	./.	0/1:4,4:32:8:0.500:2	./.	./.
chr2	32475109	rs455060	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:32:75:1.00:2	0/1:2,32:32:34:0.941:2	0/1:0,7:33:7:1.00:2	0/1:1,83:32:84:0.988:2	0/1:17,22:32:39:0.564:2	./.	0/1:0,46:32:46:1.00:2	./.	0/1:50,39:33:89:0.438:2	0/1:43,29:33:72:0.403:2	0/1:1,102:32:103:0.990:2
chr2	32475685	rs377140938	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,23:31:56:0.411:2	./.	./.
chr2	32476390	rs408813	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:33:66:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,123:33:123:1.00:2	0/1:30,45:33:75:0.600:2	./.	0/1:1,98:33:99:0.990:2	./.	0/1:46,58:34:104:0.558:2	0/1:47,27:32:74:0.365:2	0/1:0,104:32:104:1.00:2
chr2	32481794	rs34710533	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr2	32481795	rs59966205	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:32:75:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,9:31:9:1.00:2	0/1:2,103:31:105:0.981:2	0/1:28,29:32:57:0.509:2	./.	0/1:0,57:32:57:1.00:2	./.	0/1:54,62:32:116:0.534:2	0/1:51,31:32:82:0.378:2	0/1:0,122:32:122:1.00:2
chr2	32517384	rs55684792	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,53:32:98:0.541:2	./.	./.	./.	0/1:92,62:33:154:0.403:2	./.	./.
chr2	32602668	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,6:32:151:0.040:2	./.	./.
chr2	32626288	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,4:31:148:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr2	32640396	rs34417238	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,41:32:75:0.547:2	./.	./.	./.	0/1:47,48:33:95:0.505:2	./.	./.
chr2	32641040	rs34996177	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,8:31:27:0.296:2	./.	./.	./.
chr2	32666411	rs41291167	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,27:31:45:0.600:2	0/1:13,15:30:28:0.536:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	32667182	rs60197615	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,23:33:23:1.00:2	0/1:0,18:32:18:1.00:2	./.	0/1:0,28:33:28:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,34:34:34:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,34:34:34:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,39:33:39:1.00:2
chr2	32713706	rs2366894	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,145:32:145:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,17:31:17:1.00:2	0/1:2,154:31:156:0.987:2	0/1:57,53:32:110:0.482:2	0/1:89,76:31:165:0.461:2	0/1:68,53:32:121:0.438:2	0/1:83,69:32:152:0.454:2	0/1:96,79:32:175:0.451:2	0/1:67,69:31:136:0.507:2	0/1:0,120:32:120:1.00:2
chr2	32718615	rs61754197	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,24:31:51:0.471:2	./.	./.	./.	0/1:38,27:33:65:0.415:2	./.	./.
chr2	32734847	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,8:32:18:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	32735633	rs61754198	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,14:31:30:0.467:2	./.	./.	./.	0/1:29,29:33:58:0.500:2	./.	./.
chr2	32740138	rs34757266	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,56:33:102:0.549:2	0/1:22,25:32:47:0.532:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	32740599	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,5:28:161:0.031:2	./.	./.
chr2	32757239	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,7:20:78:0.090:2	./.	./.	./.
chr2	32800422	rs35286811	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,35:29:106:0.330:2	./.	0/1:41,36:31:77:0.468:2	./.	./.	./.
chr2	32822957	rs2710625	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,25:29:53:0.472:2	0/1:18,14:30:32:0.438:2	0/1:0,9:31:9:1.00:2	0/1:1,36:31:37:0.973:2	./.	./.	0/1:44,40:31:85:0.476:2	./.	./.	0/1:21,9:30:30:0.300:2	0/1:1,51:31:52:0.981:2
chr2	32855615	rs2710623	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,12:33:12:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,13:34:13:1.00:2	0/1:0,15:32:16:1.00:2	0/1:0,13:35:13:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,23:32:23:1.00:2
chr2	32855706	rs181139902	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,42:31:83:0.506:2	./.	./.	./.	./.	./.	./.	./.
chr2	32865435	rs150963117	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,33:32:79:0.418:2	./.	./.	./.	./.
chr2	32961858	rs2273660	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,38:32:70:0.543:2	./.
chr2	32983526	rs2273665	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,51:30:51:1.00:2	./.	0/1:0,69:30:69:1.00:2	0/1:24,20:31:44:0.455:2	0/1:32,34:30:66:0.515:2	0/1:44,32:31:76:0.421:2	0/1:1,37:30:38:0.974:2	0/1:25,38:30:63:0.603:2
chr2	33042596	rs151264467	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,70:33:133:0.526:2
chr2	33359533	rs77548335	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,63:31:141:0.447:2	./.	./.	./.
chr2	33359565	rs116713089	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,45:31:120:0.375:2	./.	./.	./.	0/1:57,36:31:93:0.387:2
chr2	33412077	rs1065324	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:32:94:1.00:2	0/1:0,53:31:54:1.00:2	0/1:5,5:32:10:0.500:2	0/1:62,46:31:108:0.426:2	0/1:70,51:31:121:0.421:2	0/1:49,50:31:99:0.505:2	0/1:83,63:31:146:0.432:2	./.	./.	0/1:59,45:31:104:0.433:2	0/1:63,49:31:112:0.438:2
chr2	33447202	rs2290448	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:31:103:1.00:2	0/1:1,54:31:55:0.982:2	0/1:7,8:29:15:0.533:2	0/1:91,48:31:139:0.345:2	0/1:74,40:29:114:0.351:2	0/1:112,75:30:187:0.401:2	0/1:46,39:31:85:0.459:2	./.	./.	0/1:60,40:31:100:0.400:2	0/1:67,65:31:132:0.492:2
chr2	33484666	rs61754245	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,13:33:23:0.565:2	./.	./.	./.	./.
chr2	33487873	rs77938757	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,30:31:74:0.405:2	0/1:22,11:32:33:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	33488419	rs12468099	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:23,46:33:69:0.667:2	0/1:20,27:32:47:0.574:2	0/1:4,5:32:9:0.556:2	./.	./.	./.	0/1:57,31:32:88:0.352:2	0/1:61,31:32:92:0.337:2	./.	./.	./.
chr2	33505139	rs2290427	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,42:32:77:0.545:2	./.	./.	./.	./.
chr2	33540248	rs1058840	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,37:32:61:0.607:2	0/1:16,22:31:38:0.579:2	./.	0/1:45,33:32:78:0.423:2	0/1:0,65:31:65:1.00:2	0/1:38,51:31:89:0.573:2	0/1:50,31:32:81:0.383:2	0/1:1,97:32:98:0.990:2	0/1:39,32:32:71:0.451:2	0/1:0,53:31:53:1.00:2	0/1:55,45:32:100:0.450:2
chr2	33567931	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,5:30:66:0.076:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	33572555	rs6706620	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,58:32:132:0.439:2	./.	./.
chr2	33585796	rs4422143	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:30:57:1.00:2	0/1:1,31:28:32:0.969:2	0/1:0,10:32:10:1.00:2	0/1:0,98:30:98:1.00:2	0/1:0,101:29:101:1.00:2	0/1:0,93:29:93:1.00:2	0/1:0,88:30:88:1.00:2	0/1:0,106:29:106:1.00:2	0/1:0,82:29:82:1.00:2	0/1:0,67:29:67:1.00:2	0/1:0,101:28:101:1.00:2
chr2	33764286	rs7592762	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,11:32:19:0.579:2	0/1:2,95:32:97:0.979:2	0/1:52,34:31:86:0.395:2	./.	0/1:52,49:33:101:0.485:2	0/1:67,57:33:124:0.460:2	0/1:56,57:33:113:0.504:2	0/1:59,48:32:107:0.449:2	0/1:70,48:33:118:0.407:2
chr2	33780605	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:31:120:0.034:2	./.	./.	./.	./.	./.
chr2	33787773	rs13415927	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,33:32:95:0.347:2	./.	./.	./.	0/1:97,73:34:170:0.429:2	./.	./.
chr2	36704144	rs848547	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,47:32:95:0.495:2	0/1:26,22:31:48:0.458:2	0/1:2,3:31:5:0.600:2	0/1:52,69:31:121:0.570:2	./.	./.	0/1:0,134:32:134:1.00:2	0/1:79,72:32:151:0.477:2	0/1:55,58:33:113:0.513:2	0/1:0,78:33:78:1.00:2	./.
chr2	36756288	rs711247	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,27:29:64:0.422:2	0/1:20,19:29:39:0.487:2	0/1:0,10:30:10:1.00:2	0/1:44,65:30:109:0.596:2	0/1:0,48:30:48:1.00:2	0/1:50,41:30:91:0.451:2	0/1:0,75:30:76:1.00:2	0/1:2,92:29:94:0.979:2	0/1:0,85:31:85:1.00:2	0/1:0,71:30:71:1.00:2	0/1:0,119:29:119:1.00:2
chr2	36764607	rs113863774	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,34:31:79:0.430:2	./.	0/1:32,19:31:51:0.373:2
chr2	36781401	rs1533946	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,3:33:16:0.188:2	0/1:36,34:32:70:0.486:2	0/1:38,33:32:71:0.465:2	0/1:22,43:32:65:0.662:2	0/1:36,36:33:72:0.500:2	0/1:49,34:31:83:0.410:2	0/1:30,43:33:73:0.589:2	0/1:0,57:33:57:1.00:2	0/1:0,80:32:80:1.00:2
chr2	36782886	rs848642	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:26,23:32:49:0.469:2	0/1:9,14:32:23:0.609:2	0/1:1,2:31:3:0.667:2	./.	./.	./.	0/1:19,17:32:36:0.472:2	./.	./.	./.	./.
chr2	36783127	rs10194100	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,9:33:16:0.563:2	0/1:71,49:32:120:0.408:2	0/1:45,29:32:74:0.392:2	0/1:73,74:33:147:0.503:2	0/1:50,33:32:83:0.398:2	0/1:58,67:32:125:0.536:2	0/1:97,78:34:175:0.446:2	0/1:1,101:33:102:0.990:2	0/1:1,159:33:160:0.994:2
chr2	36808732	rs848637	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,64:33:122:0.525:2	0/1:38,49:33:87:0.563:2	0/1:1,18:32:19:0.947:2	0/1:73,64:33:137:0.467:2	0/1:49,40:31:89:0.449:2	0/1:77,56:31:133:0.421:2	0/1:0,83:33:83:1.00:2	0/1:58,57:32:115:0.496:2	0/1:59,88:34:147:0.599:2	0/1:1,117:33:118:0.992:2	0/1:0,177:33:177:1.00:2
chr2	36810586	rs14291	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,50:29:98:0.510:2	0/1:48,50:28:98:0.510:2	0/1:53,42:29:95:0.442:2	0/1:48,42:29:90:0.467:2	0/1:49,67:29:117:0.578:2	0/1:52,52:30:104:0.500:2	0/1:0,60:28:60:1.00:2	0/1:0,94:29:94:1.00:2
chr2	37000956	rs140104536	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:77,63:32:140:0.450:2	0/1:43,31:33:74:0.419:2	./.	0/1:108,89:32:197:0.452:2	./.	./.	./.	./.	./.	./.	./.
chr2	37008924	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:31:47:0.085:2	./.	./.
chr2	37032669	rs72785023	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,28:30:74:0.378:2	0/1:23,22:31:45:0.489:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	37041480	rs17441812	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:31:8:0.500:2	./.	./.	0/1:26,25:31:51:0.490:2	./.	0/1:49,33:31:82:0.402:2	./.	./.	./.
chr2	37088384	rs140246246	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,28:33:48:0.583:2	./.
chr2	37094945	rs2540923	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:34:32:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,5:28:5:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,4:34:4:1.00:2	0/1:0,25:34:25:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,26:34:26:1.00:2
chr2	37152258	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:33:196:0.020:2	./.
chr2	37152329	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:30:87:0.046:2	./.	./.	0/1:117,4:33:121:0.033:2	./.	./.
chr2	37152334	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:86,5:30:91:0.055:2	0/1:69,8:28:77:0.104:2	./.	0/1:88,4:30:92:0.043:2	0/1:63,4:28:67:0.060:2	0/1:69,9:26:79:0.115:2	0/1:54,4:31:58:0.069:2	0/1:88,6:29:94:0.064:2	0/1:107,9:28:116:0.078:2	./.	0/1:112,4:32:116:0.034:2
chr2	37152342	rs200160777	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:63,5:26:68:0.074:2	./.	./.	./.	0/1:67,6:25:73:0.082:2	./.	./.	0/1:107,4:30:111:0.036:2	./.	./.
chr2	37229453	rs145906870	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,63:33:132:0.477:2
chr2	37230728	rs1007823	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,35:32:89:0.393:2	./.	./.	./.	./.	./.	./.	./.
chr2	37230734	rs17497654	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,35:31:78:0.449:2	0/1:27,26:32:53:0.491:2	0/1:48,27:31:75:0.360:2	./.	0/1:58,29:31:87:0.333:2	./.
chr2	37241050	rs17020125	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,52:31:104:0.500:2	./.	./.	./.	./.	./.	./.	0/1:0,117:32:117:1.00:2
chr2	37280680	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:33:182:0.022:2	./.
chr2	37295867	rs75759149	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,38:33:82:0.463:2	./.	./.
chr2	37306340	rs6758981	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,88:30:92:0.957:2
chr2	37306343	rs6743906	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:31:44:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,56:30:56:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,92:31:92:1.00:2
chr2	37315514	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,6:33:94:0.064:2	./.
chr2	37315559	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,6:30:175:0.034:2	./.
chr2	37317869	rs4670654	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:32:75:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,75:32:75:1.00:2	0/1:2,92:32:94:0.979:2	0/1:0,69:32:69:1.00:2	0/1:0,132:32:132:1.00:2
chr2	37319156	rs62621388	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,84:28:84:1.00:2
chr2	37402281	rs192623599	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,40:31:114:0.354:2	./.	./.	./.	./.
chr2	37402356	rs45439591	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,70:33:70:1.00:2
chr2	37406644	rs10182091	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,14:29:36:0.389:2	0/1:20,13:28:33:0.394:2	./.	0/1:19,11:30:30:0.367:2	0/1:12,8:28:20:0.400:2	./.	0/1:23,12:30:35:0.343:2	./.	./.	./.	0/1:0,40:29:40:1.00:2
chr2	37406680	rs10205833	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,14:32:32:0.438:2	0/1:18,16:31:34:0.471:2	./.	0/1:16,21:32:37:0.568:2	0/1:11,7:32:18:0.389:2	./.	0/1:21,11:32:32:0.344:2	./.	./.	./.	0/1:0,54:32:54:1.00:2
chr2	37414541	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,3:32:32:0.094:2	./.	./.	./.	./.	./.	./.
chr2	37414548	rs45493492	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,61:33:61:1.00:2
chr2	37414586	rs45626240	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,36:32:36:1.00:2
chr2	37415603	rs45552433	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,144:32:146:0.993:2
chr2	37438993	rs1137437	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:68,56:32:124:0.452:2	0/1:43,32:32:75:0.427:2	0/1:0,17:30:17:1.00:2	0/1:0,139:32:140:1.00:2	0/1:3,98:31:101:0.970:2	0/1:93,51:31:144:0.354:2	./.	0/1:125,74:31:199:0.372:2	0/1:81,72:32:153:0.471:2	0/1:2,96:32:98:0.980:2	./.
chr2	37456032	rs2098386	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:31:39:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,26:31:26:1.00:2	0/1:44,17:32:61:0.279:2	0/1:0,37:32:37:1.00:2	0/1:0,56:32:56:1.00:2
chr2	37458711	rs3213745	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,14:30:50:0.280:2	0/1:17,14:31:31:0.452:2	0/1:0,14:30:14:1.00:2	0/1:2,55:31:57:0.965:2	0/1:2,58:30:60:0.967:2	0/1:29,30:30:59:0.508:2	./.	0/1:30,29:30:59:0.492:2	0/1:39,31:32:71:0.443:2	0/1:0,47:31:47:1.00:2	./.
chr2	37468837	rs17409514	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:32:15:0.533:2	./.	./.	./.	./.	./.	./.	0/1:46,39:33:85:0.459:2	./.
chr2	37494591	rs2302650	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,11:26:33:0.333:2	0/1:8,8:29:16:0.500:2	./.	./.	./.	0/1:26,24:29:50:0.480:2	0/1:16,10:27:26:0.385:2	./.	./.	./.	./.
chr2	37505105	rs10460527	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,101:33:101:1.00:2
chr2	37518045	rs10177176	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,27:33:59:0.458:2	0/1:10,23:32:33:0.697:2	0/1:0,11:31:11:1.00:2	0/1:1,56:33:57:0.982:2	0/1:2,36:32:38:0.947:2	0/1:27,38:32:65:0.585:2	./.	0/1:38,30:32:68:0.441:2	0/1:30,40:33:70:0.571:2	0/1:1,54:33:55:0.982:2	./.
chr2	37543593	rs55698418	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,73:31:74:1.00:2
chr2	37579937	rs2230299	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,79:30:79:1.00:2
chr2	38178406	rs4670799	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,13:31:23:0.565:2	0/1:12,6:30:18:0.333:2	0/1:14,9:32:23:0.391:2	0/1:8,5:32:13:0.385:2	0/1:14,12:31:26:0.462:2	0/1:0,24:33:24:1.00:2	0/1:6,13:31:19:0.684:2	0/1:19,17:32:36:0.472:2
chr2	38179134	rs4670800	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:32:65:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,103:30:103:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,109:31:109:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,88:31:89:1.00:2	0/1:0,113:32:114:1.00:2
chr2	38201219	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	38244693	rs73926971	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,11:30:19:0.579:2	./.	./.	./.	./.
chr2	38297884	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:32:113:0.035:2	./.	./.	./.
chr2	38298139	rs1800440	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,57:33:119:0.479:2	./.	./.	./.	./.	0/1:77,43:33:121:0.358:2	./.	./.
chr2	38298150	rs1056837	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,45:28:108:0.417:2	0/1:36,27:29:63:0.429:2	0/1:9,4:28:13:0.308:2	0/1:1,113:29:114:0.991:2	0/1:75,46:29:121:0.380:2	0/1:0,152:29:152:1.00:2	0/1:52,51:29:103:0.495:2	0/1:80,61:28:141:0.433:2	0/1:89,43:29:132:0.326:2	0/1:79,59:29:138:0.428:2	0/1:75,61:28:136:0.449:2
chr2	38298169	rs4986888	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,55:32:114:0.482:2	./.	./.	./.	./.
chr2	38298203	rs1056836	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,65:33:137:0.474:2	0/1:40,30:32:70:0.429:2	0/1:6,7:34:13:0.538:2	0/1:1,140:32:141:0.993:2	0/1:78,48:31:126:0.381:2	0/1:0,155:32:155:1.00:2	0/1:90,63:33:153:0.412:2	0/1:101,61:32:162:0.377:2	0/1:112,59:33:171:0.345:2	0/1:74,63:33:137:0.460:2	0/1:82,65:33:147:0.442:2
chr2	38298419	rs141245683	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,57:32:138:0.413:2	./.	./.	./.	./.
chr2	38301569	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,52:32:130:0.400:2	./.	./.	./.
chr2	38301803	rs9341249	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,33:31:76:0.434:2	./.	./.	./.	./.
chr2	38302390	rs10012	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:34:8:0.375:2	./.	0/1:0,6:31:6:1.00:2	./.	0/1:4,6:32:10:0.600:2	./.	./.	./.
chr2	38525490	rs181740472	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,39:30:104:0.375:2	./.	./.	./.	./.	./.	./.	./.
chr2	38536626	rs2305243	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:5,6:32:11:0.545:2	0/1:1,6:32:7:0.857:2	./.	0/1:5,7:31:12:0.583:2	./.	0/1:18,7:29:25:0.280:2	0/1:10,5:31:15:0.333:2	0/1:15,6:31:21:0.286:2	0/1:4,9:32:13:0.692:2	0/1:10,6:31:16:0.375:2	./.
chr2	38542482	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,4:30:44:0.091:2	./.	./.	./.	./.	./.	./.	./.
chr2	38546072	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:33:101:0.040:2	./.	./.
chr2	38604351	rs3731847	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:27:11:0.636:2	./.	./.	./.	./.	0/1:10,5:29:15:0.333:2	0/1:0,8:27:8:1.00:2	./.	0/1:4,4:30:8:0.500:2	./.	./.
chr2	38829737	rs34376380	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,29:30:43:0.674:2	./.	./.	./.	./.	./.	0/1:7,22:31:29:0.759:2	./.
chr2	38916970	rs6741892	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,41:30:89:0.461:2	0/1:25,25:31:50:0.500:2	./.	./.	./.	./.
chr2	39008949	rs1056104	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,34:31:63:0.540:2	./.	./.	./.	./.	./.
chr2	39025499	rs61757607	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,61:32:146:0.418:2	./.
chr2	39025555	rs1530853	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:52,42:32:94:0.447:2	0/1:42,28:32:70:0.400:2	./.	0/1:0,74:32:74:1.00:2	0/1:0,52:31:53:1.00:2	0/1:41,36:31:77:0.468:2	0/1:37,34:32:71:0.479:2	0/1:46,46:32:92:0.500:2	./.	0/1:49,42:32:91:0.462:2	0/1:63,57:32:120:0.475:2
chr2	39046069	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,16:31:48:0.333:2	./.	./.	./.	./.
chr2	39050141	rs3770681	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,27:31:49:0.551:2	0/1:20,6:31:26:0.231:2	./.	0/1:0,41:31:41:1.00:2	0/1:1,37:31:38:0.974:2	0/1:30,23:30:53:0.434:2	0/1:31,16:32:47:0.340:2	0/1:33,18:30:51:0.353:2	0/1:36,34:32:70:0.486:2	0/1:24,8:33:32:0.250:2	0/1:45,31:31:76:0.408:2
chr2	39081244	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:116,4:31:120:0.033:2	./.	./.	./.	./.	./.	./.
chr2	39082344	rs7598922	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,37:33:90:0.411:2	0/1:27,22:32:49:0.449:2	0/1:7,5:33:12:0.417:2	0/1:0,92:32:92:1.00:2	0/1:4,67:32:71:0.944:2	0/1:56,38:32:94:0.404:2	0/1:68,34:32:102:0.333:2	0/1:49,40:32:89:0.449:2	./.	0/1:53,42:33:95:0.442:2	0/1:72,44:33:116:0.379:2
chr2	39088323	rs11893062	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,22:32:58:0.379:2	./.	./.	./.
chr2	39095403	rs61757604	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,25:32:42:0.595:2	./.	./.	./.	./.
chr2	39109558	rs3099950	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	0/1:21,26:30:47:0.553:2	./.	0/1:25,14:31:39:0.359:2	./.
chr2	39148511	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:33:114:0.035:2	./.	./.
chr2	39164561	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,30:30:73:0.411:2	./.	./.	./.	./.	./.
chr2	39187190	rs6755527	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	0/1:1,3:29:4:0.750:2	./.	./.	./.	./.	./.
chr2	39285828	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:125,4:31:129:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr2	39456516	rs35454041	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,21:32:48:0.438:2	0/1:12,11:31:23:0.478:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	39507417	rs3755176	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:32:73:1.00:2	0/1:0,43:31:43:1.00:2	0/1:9,6:30:15:0.400:2	0/1:38,36:31:74:0.486:2	0/1:0,51:31:51:1.00:2	0/1:43,58:31:101:0.574:2	0/1:0,42:31:42:1.00:2	0/1:0,102:31:102:1.00:2	0/1:0,121:32:121:1.00:2	0/1:0,68:31:68:1.00:2	0/1:1,120:32:121:0.992:2
chr2	39583446	rs8545	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:0,49:33:49:1.00:2	0/1:4,4:33:8:0.500:2	0/1:40,74:33:114:0.649:2	0/1:0,75:32:75:1.00:2	0/1:0,122:32:122:1.00:2	0/1:0,81:32:81:1.00:2	0/1:2,116:33:118:0.983:2	0/1:0,144:34:144:1.00:2	0/1:0,95:33:95:1.00:2	0/1:1,162:33:163:0.994:2
chr2	39664092	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:29:73:0.055:2	./.	./.	./.	./.	./.
chr2	39892373	rs12989245	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:31:5:1.00:2	./.	0/1:1,42:30:43:0.977:2	0/1:20,26:32:46:0.565:2	./.	./.	0/1:30,28:32:58:0.483:2	./.	0/1:19,22:30:41:0.537:2
chr2	39892377	rs12712652	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:29:5:1.00:2	./.	0/1:1,45:29:46:0.978:2	0/1:21,25:28:46:0.543:2	./.	./.	0/1:29,28:30:57:0.491:2	./.	0/1:20,24:28:44:0.545:2
chr2	39996230	rs6745129	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,16:30:24:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	40657129	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:31:70:0.057:2	./.	./.
chr2	42165754	rs10192292	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:32:10:0.400:2	0/1:74,77:32:152:0.510:2	./.	0/1:69,49:31:118:0.415:2	0/1:83,61:32:144:0.424:2	0/1:3,133:32:136:0.978:2	./.	./.	0/1:65,39:33:104:0.375:2
chr2	42165757	rs7576690	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,50:33:137:0.365:2	./.	./.	0/1:65,39:33:104:0.375:2
chr2	42181169	rs76580820	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,26:31:74:0.351:2	./.
chr2	42181226	rs10180209	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,34:32:81:0.420:2	./.	0/1:48,26:31:74:0.351:2	./.
chr2	42275819	rs11897440	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:32:8:0.500:2	./.	./.	./.	./.	./.
chr2	42275876	rs55918906	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,4:33:17:0.235:2	./.	./.	./.	./.
chr2	42396722	rs7233	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,6:33:16:0.375:2	0/1:4,7:33:11:0.636:2	./.	0/1:12,14:33:26:0.538:2	0/1:9,15:32:24:0.625:2	0/1:24,20:32:44:0.455:2	./.	0/1:21,15:31:36:0.417:2	0/1:0,24:32:24:1.00:2	0/1:0,18:33:18:1.00:2	0/1:8,9:32:17:0.529:2
chr2	42510018	rs6736913	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:33:72:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,39:31:40:1.00:2	0/1:2,74:32:76:0.974:2	0/1:0,46:32:46:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,77:32:77:1.00:2	0/1:1,84:33:85:0.988:2
chr2	42515388	rs10202624	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,75:33:75:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,61:32:61:1.00:2	0/1:1,74:33:75:0.987:2	0/1:0,37:32:37:1.00:2	0/1:0,93:33:93:1.00:2
chr2	42515437	rs28651764	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,10:32:28:0.357:2	0/1:10,6:32:16:0.375:2	0/1:0,5:31:5:1.00:2	0/1:14,19:33:33:0.576:2	./.	0/1:16,19:32:35:0.543:2	0/1:1,19:32:20:0.950:2	0/1:12,18:31:30:0.600:2	./.	./.	0/1:36,24:32:60:0.400:2
chr2	42528425	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:34:197:0.020:2
chr2	42531610	rs148415631	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,54:29:88:0.614:2
chr2	42671619	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,52:33:103:0.505:2	0/1:49,23:31:72:0.319:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	42979422	rs115399461	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,13:31:40:0.325:2	./.	./.	./.	./.	./.	./.
chr2	42990101	rs2278586	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,28:32:61:0.459:2	0/1:38,25:31:63:0.397:2	0/1:33,39:32:72:0.542:2	./.	./.	0/1:27,27:32:54:0.500:2	./.
chr2	42990336	rs1992286	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:39,36:31:75:0.480:2	0/1:24,21:31:45:0.467:2	./.	./.	0/1:89,72:32:161:0.447:2	0/1:3,104:33:107:0.972:2	0/1:0,116:33:116:1.00:2	0/1:79,63:32:142:0.444:2	./.	0/1:52,40:32:92:0.435:2	0/1:0,73:32:73:1.00:2
chr2	42990344	rs200634238	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,6:20:57:0.105:2	./.	./.	0/1:69,18:24:87:0.207:2	0/1:94,27:21:122:0.223:2	0/1:68,9:24:77:0.117:2	0/1:75,14:24:89:0.157:2	0/1:87,21:22:109:0.194:2	0/1:67,8:25:75:0.107:2	0/1:60,9:23:70:0.130:2	0/1:46,5:22:51:0.098:2
chr2	42990476	rs147328832	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,29:33:59:0.492:2	./.	./.
chr2	42990522	rs12712859	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,31:31:55:0.564:2	0/1:44,23:30:67:0.343:2	0/1:38,15:31:53:0.283:2	./.	./.	0/1:23,17:32:40:0.425:2	./.
chr2	43015704	rs3816182	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,73:31:187:0.390:2	0/1:100,68:31:168:0.405:2	0/1:102,77:31:180:0.430:2	./.	0/1:95,47:30:143:0.331:2	./.
chr2	43015719	rs3816183	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:79,57:29:136:0.419:2	0/1:37,37:28:74:0.500:2	./.	./.	0/1:0,156:29:156:1.00:2	0/1:0,170:29:170:1.00:2	0/1:1,151:28:152:0.993:2	0/1:0,165:29:165:1.00:2	0/1:97,79:31:176:0.449:2	0/1:84,47:28:131:0.359:2	0/1:0,157:29:157:1.00:2
chr2	43015757	rs3816184	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:66,47:32:113:0.416:2	0/1:31,29:31:60:0.483:2	./.	./.	0/1:0,100:30:101:1.00:2	0/1:0,123:31:123:1.00:2	0/1:0,113:31:113:1.00:2	0/1:0,120:31:120:1.00:2	0/1:66,55:32:121:0.455:2	0/1:57,32:31:90:0.360:2	0/1:0,127:31:129:1.00:2
chr2	43506946	rs183860704	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,5:31:90:0.056:2	./.
chr2	43519977	rs35720761	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:33:8:0.500:2	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	43625184	rs33979934	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,125:31:125:1.00:2	0/1:92,87:31:179:0.486:2	0/1:0,150:31:150:1.00:2	0/1:89,83:32:172:0.483:2	0/1:92,79:31:172:0.462:2	./.	./.	0/1:69,55:32:124:0.444:2
chr2	43711523	rs998768	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:42,36:30:79:0.462:2	0/1:30,17:31:47:0.362:2	0/1:8,7:30:15:0.467:2	./.	0/1:21,26:30:47:0.553:2	./.	./.	./.	./.	./.	./.
chr2	43732823	rs7578597	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:65,49:33:114:0.430:2	0/1:22,16:33:38:0.421:2	0/1:5,6:33:11:0.545:2	./.	0/1:37,43:33:80:0.538:2	./.	./.	./.	./.	./.	./.
chr2	43768352	rs181440554	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,87:33:194:0.448:2	./.	./.	./.	./.	./.	./.	./.
chr2	43793725	rs1158411	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:62,59:32:121:0.488:2	0/1:39,13:32:52:0.250:2	0/1:12,6:30:18:0.333:2	./.	0/1:36,38:30:74:0.514:2	./.	./.	0/1:62,32:31:94:0.340:2	./.	0/1:67,53:31:120:0.442:2	0/1:69,61:31:130:0.469:2
chr2	43797619	rs17031056	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,43:31:120:0.358:2	./.	0/1:65,61:32:126:0.484:2	0/1:61,62:32:123:0.504:2
chr2	43801712	rs11899823	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:37,32:34:69:0.464:2	0/1:12,17:33:29:0.586:2	0/1:4,4:33:8:0.500:2	./.	0/1:14,29:32:43:0.674:2	./.	./.	0/1:21,23:33:44:0.523:2	./.	0/1:20,28:33:48:0.583:2	0/1:29,32:33:61:0.525:2
chr2	43802068	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,37:32:91:0.407:2	./.	./.
chr2	43804229	rs13021894	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:46,31:32:77:0.403:2	0/1:30,20:32:50:0.400:2	0/1:10,4:33:14:0.286:2	./.	0/1:34,29:31:63:0.460:2	./.	./.	0/1:57,38:32:95:0.400:2	./.	0/1:30,40:32:70:0.571:2	0/1:47,52:32:99:0.525:2
chr2	43805739	rs61754256	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:29,25:32:54:0.463:2	0/1:9,17:31:26:0.654:2	0/1:3,3:30:6:0.500:2	./.	0/1:16,15:28:31:0.484:2	./.	./.	./.	./.	./.	./.
chr2	43819139	rs17031095	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:48,38:32:86:0.442:2	0/1:30,17:32:47:0.362:2	0/1:8,5:32:13:0.385:2	./.	0/1:51,28:32:80:0.354:2	./.	./.	./.	./.	./.	./.
chr2	43903066	rs3828297	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:98,87:30:186:0.470:2	0/1:56,59:30:115:0.513:2	0/1:12,5:29:17:0.294:2	0/1:0,181:30:181:1.00:2	0/1:6,131:29:137:0.956:2	0/1:115,73:30:188:0.388:2	0/1:5,135:30:140:0.964:2	0/1:2,189:29:191:0.990:2	./.	0/1:0,179:30:179:1.00:2	0/1:0,186:29:186:1.00:2
chr2	43903354	rs4952675	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,64:33:145:0.441:2	0/1:49,61:33:110:0.555:2	0/1:21,4:32:25:0.160:2	0/1:1,143:33:144:0.993:2	0/1:0,156:33:156:1.00:2	0/1:69,74:33:143:0.517:2	0/1:2,155:33:157:0.987:2	0/1:0,145:33:145:1.00:2	./.	0/1:0,139:33:139:1.00:2	0/1:1,166:33:167:0.994:2
chr2	43926943	rs7606783	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,118:32:120:0.983:2	0/1:78,57:32:135:0.422:2	0/1:72,48:31:120:0.400:2	0/1:69,54:32:123:0.439:2	0/1:79,75:32:155:0.487:2	./.	0/1:3,75:33:78:0.962:2	0/1:0,125:33:125:1.00:2
chr2	43927088	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:110,4:30:114:0.035:2	./.	./.	./.	./.	./.	./.
chr2	43927374	rs115528845	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,27:33:60:0.450:2	0/1:33,20:32:53:0.377:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	43927459	rs12623703	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,65:30:155:0.419:2	./.	./.	./.	./.	./.	0/1:52,53:30:105:0.505:2	0/1:65,67:29:133:0.508:2
chr2	43931168	rs145437024	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,26:32:57:0.456:2	./.	./.
chr2	43931176	rs4953002	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,3:35:54:0.056:2	./.	./.	0/1:3,51:33:54:0.944:2	0/1:10,15:32:25:0.600:2	0/1:34,17:32:51:0.333:2	0/1:20,15:33:35:0.429:2	0/1:16,19:33:35:0.543:2	./.	0/1:0,39:33:39:1.00:2	0/1:0,42:33:42:1.00:2
chr2	43984301	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:33:81:0.049:2	./.
chr2	43989525	rs76859622	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,78:33:161:0.484:2	./.	./.	0/1:69,49:33:118:0.415:2	./.	./.	./.	./.
chr2	44004010	rs2288709	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:56,41:33:97:0.423:2	0/1:35,20:33:55:0.364:2	./.	./.	./.	./.	./.	./.	./.	0/1:49,46:33:95:0.484:2	0/1:0,133:33:133:1.00:2
chr2	44021826	rs9309107	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:59,59:31:118:0.500:2	0/1:34,29:32:63:0.460:2	./.	./.	./.	./.	./.	./.	./.	0/1:42,41:31:83:0.494:2	0/1:0,160:32:160:1.00:2
chr2	44028013	rs11556157	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,16:32:37:0.432:2	0/1:11,6:32:17:0.353:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,48:32:48:1.00:2
chr2	44028773	rs17495522	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,30:31:64:0.469:2	./.	./.	./.	./.	./.
chr2	44036913	rs8302	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,68:33:143:0.479:2	0/1:44,37:33:81:0.457:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,147:34:148:0.993:2
chr2	44036922	rs10186552	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,30:29:72:0.417:2	./.	./.	0/1:42,69:30:111:0.622:2	./.
chr2	44040347	rs140374206	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,29:33:77:0.377:2
chr2	44040401	rs6720173	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,29:33:53:0.547:2	./.
chr2	44052035	rs373237261	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,42:32:128:0.328:2
chr2	44065090	rs6756629	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,38:33:82:0.463:2	0/1:24,32:33:57:0.571:2	./.
chr2	44065780	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	44066174	rs3806471	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:16,27:29:43:0.628:2	0/1:19,5:30:24:0.208:2	0/1:0,9:31:9:1.00:2	./.	0/1:33,24:31:57:0.421:2	./.	0/1:27,23:32:50:0.460:2	./.	./.	./.	0/1:23,28:30:51:0.549:2
chr2	44066247	rs11887534	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,28:33:67:0.418:2	0/1:26,37:32:63:0.587:2	./.
chr2	44071743	rs4148211	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,14:33:14:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,3:32:3:1.00:2	./.	0/1:16,18:32:34:0.529:2	0/1:11,11:33:23:0.500:2	0/1:30,18:33:48:0.375:2	./.	./.	./.	0/1:23,18:33:41:0.439:2
chr2	44078853	rs56132765	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,66:30:123:0.537:2	0/1:68,72:30:141:0.514:2	./.
chr2	44079606	rs9282575	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,12:28:26:0.462:2	./.	./.	./.	./.	./.
chr2	44099433	rs4148217	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,17:32:44:0.386:2	0/1:32,20:31:52:0.385:2	./.	./.	./.	./.	./.	./.
chr2	44100949	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:31:153:0.026:2	./.	./.	./.	./.
chr2	44101538	rs28517482	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,69:32:69:1.00:2	0/1:0,43:32:43:1.00:2	./.	0/1:30,35:31:65:0.538:2	./.	0/1:0,63:30:63:1.00:2	0/1:0,44:31:44:1.00:2	0/1:41,42:30:83:0.506:2	0/1:0,83:32:83:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,106:32:106:1.00:2
chr2	44102491	rs4148221	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,16:31:41:0.390:2	./.	./.	./.	./.	./.	./.	./.
chr2	44104925	rs6544718	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,48:32:89:0.539:2	0/1:37,33:32:70:0.471:2	0/1:4,17:33:21:0.810:2	0/1:0,159:33:159:1.00:2	0/1:94,91:32:185:0.492:2	0/1:0,133:32:133:1.00:2	0/1:107,72:32:179:0.402:2	./.	0/1:0,158:33:158:1.00:2	0/1:0,116:32:117:1.00:2	0/1:63,63:33:126:0.500:2
chr2	44139587	rs202033109	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,87:33:198:0.439:2	./.	./.
chr2	44162008	rs369815413	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,22:31:38:0.579:2	./.	./.	./.	./.
chr2	44175597	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:31:159:0.025:2	./.	./.	./.	./.	./.
chr2	44177701	rs58811869	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,48:31:102:0.471:2	./.	./.	./.	./.	0/1:46,50:32:96:0.521:2	0/1:0,87:32:87:1.00:2	./.
chr2	44177723	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,4:31:86:0.047:2	./.	./.	./.	./.	./.	./.
chr2	44201376	rs4953042	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,93:33:172:0.541:2	./.	./.	./.	./.	./.
chr2	44209477	rs6741066	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,35:32:66:0.530:2	0/1:15,11:31:26:0.423:2	0/1:0,5:31:5:1.00:2	0/1:44,16:32:60:0.267:2	0/1:21,13:32:34:0.382:2	./.	0/1:0,25:32:25:1.00:2	0/1:1,47:31:48:0.979:2	0/1:0,50:33:50:1.00:2	0/1:2,52:31:54:0.963:2	0/1:0,82:32:82:1.00:2
chr2	44471409	rs12613956	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:27,43:29:70:0.614:2	0/1:24,30:28:54:0.556:2	0/1:4,7:28:11:0.636:2	./.	0/1:1,123:29:124:0.992:2	./.	./.	./.	0/1:48,69:29:117:0.590:2	0/1:43,40:30:83:0.482:2	0/1:75,71:29:146:0.486:2
chr2	44502788	rs3738985	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,98:33:98:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,86:33:86:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,91:33:91:1.00:2	0/1:51,51:33:102:0.500:2	0/1:1,103:33:104:0.990:2	0/1:0,103:33:104:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,92:33:92:1.00:2
chr2	44512797	rs74997007	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,63:32:128:0.492:2	./.	0/1:46,61:33:107:0.570:2	./.
chr2	44513202	rs141587158	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,68:34:165:0.412:2	./.	./.
chr2	44539763	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.	./.
chr2	44547574	rs698761	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:47,32:30:79:0.405:2	0/1:34,32:30:66:0.485:2	./.	0/1:1,63:31:64:0.984:2	0/1:27,25:29:52:0.481:2	0/1:0,43:30:43:1.00:2	0/1:42,19:31:61:0.311:2	0/1:1,67:31:68:0.985:2	0/1:42,24:31:66:0.364:2	0/1:32,21:32:53:0.396:2	0/1:0,74:31:74:1.00:2
chr2	44571029	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:31:48:0.083:2	./.
chr2	44617421	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:33:43:0.093:2	./.	./.
chr2	45640334	rs3755072	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,62:32:135:0.459:2	0/1:105,78:31:183:0.426:2	0/1:138,4:31:142:0.028:2	./.	./.	0/1:66,76:33:142:0.535:2	./.
chr2	45640374	rs3755073	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:167,4:32:171:0.023:2	./.	0/1:78,76:32:154:0.494:2	./.	./.	./.	0/1:65,50:33:115:0.435:2	./.
chr2	45645512	rs2276655	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,27:31:88:0.307:2	./.	./.	./.	0/1:37,28:32:65:0.431:2	./.
chr2	46603702	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:30:116:0.034:2	./.	./.	./.	./.	./.
chr2	46607644	rs41281469	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,29:33:43:0.674:2	./.	./.
chr2	46607719	rs35606117	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,22:31:46:0.478:2	./.
chr2	46609572	rs59901247	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,54:32:101:0.535:2	./.	./.
chr2	46707808	rs70940616	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,8:33:122:0.066:2	0/1:154,5:33:159:0.031:2	0/1:107,4:36:112:0.036:2	./.	./.	./.	./.	./.
chr2	46803239	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr2	46803262	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:195,4:32:199:0.020:2	./.	0/1:184,10:33:194:0.052:2	0/1:190,4:32:194:0.021:2	./.	./.	./.	./.
chr2	46808136	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,4:31:31:0.129:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	46808168	rs55654131	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,96:30:186:0.516:2	./.	0/1:106,92:30:198:0.465:2	./.
chr2	46839424	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:32:80:0.050:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	46839433	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:31:77:0.052:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	46839477	rs1824050	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,4:28:11:0.364:2	0/1:0,46:26:46:1.00:2	0/1:32,17:27:49:0.347:2	0/1:28,24:28:52:0.462:2	./.	./.	./.	0/1:17,34:28:51:0.667:2	0/1:1,74:27:75:0.987:2
chr2	46986387	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:31:195:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	46986416	rs6738426	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,92:30:183:0.503:2	./.	0/1:79,103:29:182:0.566:2	./.	./.	./.	./.	0/1:86,106:29:192:0.552:2
chr2	46986649	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,47:29:88:0.534:2	./.	./.	./.	./.	./.
chr2	46986702	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:32:156:0.026:2	./.
chr2	46986716	rs41489952	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,88:29:193:0.456:2	0/1:86,89:30:175:0.509:2	./.	./.
chr2	46987139	rs17771838	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:31:9:0.444:2	./.	./.	0/1:22,17:31:39:0.436:2	./.	./.	0/1:28,22:34:50:0.440:2	./.	0/1:31,36:32:67:0.537:2
chr2	46987300	rs3768720	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:92,75:32:167:0.449:2	0/1:43,40:32:85:0.482:2	0/1:20,11:32:31:0.355:2	0/1:110,82:32:193:0.427:2	./.	0/1:6,189:32:195:0.969:2	0/1:98,95:32:194:0.492:2	./.	0/1:0,187:33:188:1.00:2	0/1:96,73:32:169:0.432:2	0/1:1,193:32:194:0.995:2
chr2	46987338	rs41379147	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,53:30:163:0.325:2	./.
chr2	46987341	rs41432848	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,53:32:163:0.325:2	./.
chr2	46987544	rs41320947	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,29:32:53:0.547:2	./.
chr2	46987620	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:33:43:0.093:2	./.	./.	./.	./.
chr2	46987621	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:33:40:0.100:2	./.	./.	./.	./.
chr2	46987767	rs10221923	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:34:8:0.375:2	./.	./.	0/1:23,37:31:60:0.617:2	./.	./.	0/1:42,39:33:81:0.481:2	./.	0/1:59,52:33:111:0.468:2
chr2	46987893	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:33:51:0.078:2
chr2	46987935	rs3768719	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,9:32:25:0.360:2	./.	0/1:1,23:32:24:0.958:2	./.	./.	0/1:22,15:33:37:0.405:2	./.	0/1:1,38:33:39:0.974:2
chr2	46988073	rs17823065	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,73:33:181:0.403:2	0/1:90,91:34:181:0.503:2	./.	./.
chr2	46988145	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:31:117:0.034:2	./.	./.	./.
chr2	46988275	rs1058157	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,26:32:48:0.542:2	./.	0/1:30,13:31:43:0.302:2	./.	./.	./.	./.	0/1:40,37:32:77:0.481:2
chr2	46988416	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,7:32:196:0.036:2	./.	0/1:190,6:33:196:0.031:2	./.
chr2	46989262	rs17771942	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,11:30:32:0.355:2	./.	./.	./.
chr2	46989869	rs4953419	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,22:32:31:0.710:2	./.	0/1:13,10:32:23:0.435:2	./.	./.	./.	./.	0/1:23,29:32:52:0.558:2
chr2	46990263	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:32:69:0.058:2	./.	./.	./.	./.	./.
chr2	47045309	rs2289933	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,20:31:53:0.377:2	0/1:27,10:32:37:0.270:2	./.	0/1:0,49:31:49:1.00:2	0/1:19,16:29:35:0.457:2	0/1:40,37:30:77:0.481:2	./.	0/1:44,32:31:76:0.421:2	./.	./.	0/1:21,26:31:47:0.553:2
chr2	47045321	rs17773492	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:37,22:32:59:0.373:2	0/1:32,10:32:42:0.238:2	./.	0/1:0,53:31:53:1.00:2	0/1:25,16:29:41:0.390:2	0/1:42,38:32:80:0.475:2	./.	0/1:50,35:32:85:0.412:2	./.	./.	0/1:25,24:32:50:0.490:2
chr2	47049287	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:33:84:0.048:2
chr2	47081196	rs61507430	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	0/1:6,3:30:9:0.333:2	./.	./.	0/1:1,4:30:5:0.800:2
chr2	47083044	rs1079	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:32:5:0.800:2	0/1:0,2:33:2:1.00:2	./.	./.	0/1:0,3:31:3:1.00:2	./.	0/1:0,3:30:3:1.00:2	./.	0/1:8,3:33:11:0.273:2	0/1:0,4:32:4:1.00:2	./.
chr2	47133055	rs11890177	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,21:30:60:0.350:2	./.	./.	0/1:39,38:30:77:0.494:2	./.	0/1:55,41:30:96:0.427:2	0/1:48,62:30:110:0.564:2
chr2	47177617	rs61738825	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,51:32:104:0.490:2
chr2	47202190	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:33:94:0.043:2
chr2	47220622	rs17480869	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:69,57:32:126:0.452:2	0/1:38,46:31:84:0.548:2	0/1:0,12:32:12:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:71,88:32:160:0.553:2
chr2	47251469	rs2304290	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,41:32:73:0.562:2	0/1:79,56:31:135:0.415:2	./.	./.	./.	./.
chr2	47251510	rs11885389	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:32:10:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:36,30:33:66:0.455:2
chr2	47278901	rs3739100	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,32:30:55:0.582:2	./.	./.	./.	./.
chr2	47287966	rs142959785	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,81:32:159:0.509:2	./.
chr2	47301029	rs3739099	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:54,35:32:89:0.393:2	0/1:35,28:32:63:0.444:2	./.	0/1:88,72:32:160:0.450:2	./.	./.	0/1:83,54:32:137:0.394:2	./.	./.	0/1:56,44:33:100:0.440:2	./.
chr2	47317444	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,4:30:60:0.067:2	./.	./.	./.	./.	./.	./.	./.
chr2	47378529	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:33:190:0.021:2
chr2	47382300	rs815805	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,63:31:110:0.573:2	./.	./.	./.	./.	./.	./.
chr2	47382342	rs815804	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,137:31:138:0.993:2	./.	./.	./.	./.	0/1:35,44:32:79:0.557:2	0/1:28,22:30:50:0.440:2
chr2	47600671	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,39:30:79:0.494:2	./.	./.
chr2	47600966	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,5:25:112:0.045:2	./.	./.	./.
chr2	47601106	rs1126497	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:31,31:30:62:0.500:2	0/1:14,30:28:44:0.682:2	./.	0/1:2,72:30:74:0.973:2	./.	0/1:49,31:29:80:0.388:2	0/1:36,43:29:79:0.544:2	0/1:46,55:30:101:0.545:2	0/1:34,37:29:71:0.521:2	0/1:37,21:28:58:0.362:2	./.
chr2	47604866	rs58450758	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,9:31:31:0.290:2	./.	./.	./.	./.
chr2	47606096	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,20:32:51:0.392:2	./.	./.
chr2	47630461	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:32:65:0.062:2
chr2	47690201	rs63751403	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:32:109:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	47739551	rs2303424	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,82:30:83:0.988:2	./.	0/1:26,35:30:61:0.574:2	0/1:44,37:30:81:0.457:2	0/1:3,65:29:68:0.956:2	0/1:0,65:30:65:1.00:2	0/1:24,18:31:42:0.429:2	./.
chr2	47797123	rs139772114	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.
chr2	48010558	rs1042820	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.
chr2	48018081	rs1800932	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:49,35:29:84:0.417:2	0/1:37,25:29:62:0.403:2	./.	0/1:0,101:29:101:1.00:2	./.	0/1:58,61:29:119:0.513:2	./.	./.	./.	./.	./.
chr2	48023115	rs1800935	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,79:31:79:1.00:2	0/1:1,45:29:46:0.978:2	./.	0/1:0,103:30:103:1.00:2	./.	0/1:61,77:30:138:0.558:2	./.	./.	./.	./.	0/1:73,53:30:126:0.421:2
chr2	48025764	rs1800937	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,8:32:12:0.667:2	0/1:3,4:31:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,5:33:8:0.625:2
chr2	48026079	rs375210430	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,4:32:33:0.121:2	./.
chr2	48027096	rs372916347	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:30:89:0.045:2	./.
chr2	48032758	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,15:14:109:0.138:2
chr2	48059948	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:30:105:0.038:2
chr2	48602186	rs34136171	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,74:33:158:0.474:2	0/1:39,41:33:80:0.513:2	./.	./.	./.	./.	./.	./.	0/1:96,87:34:183:0.475:2	./.	./.
chr2	48602252	rs17855177	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:103,72:32:175:0.411:2	0/1:44,62:32:106:0.585:2	./.	./.	0/1:105,85:32:190:0.447:2	0/1:116,80:32:196:0.408:2	0/1:108,81:33:189:0.429:2	./.	0/1:102,80:34:182:0.440:2	./.	0/1:102,85:33:187:0.455:2
chr2	48681868	rs76587580	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,56:32:162:0.346:2	./.	./.	./.	./.	./.
chr2	48713777	rs33994624	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:43,29:33:72:0.403:2	0/1:14,17:33:31:0.548:2	./.	./.	./.	./.	./.	./.	./.	0/1:34,28:32:62:0.452:2	./.
chr2	48807796	rs17039250	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,40:33:41:0.976:2	0/1:4,21:32:25:0.840:2	./.	./.	0/1:27,11:32:38:0.289:2	./.	0/1:35,18:32:53:0.340:2	./.	./.	0/1:23,9:33:32:0.281:2	./.
chr2	48807976	rs3828340	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,77:32:78:0.987:2	0/1:1,37:32:38:0.974:2	./.	./.	0/1:34,23:32:57:0.404:2	./.	0/1:19,18:33:37:0.486:2	./.	./.	0/1:25,32:32:57:0.561:2	./.
chr2	48808152	rs940389	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,68:32:68:1.00:2	0/1:2,43:32:45:0.956:2	./.	./.	0/1:43,39:31:82:0.476:2	./.	0/1:59,53:32:112:0.473:2	./.	./.	0/1:45,46:32:91:0.505:2	./.
chr2	48808594	rs3749142	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,70:32:72:0.972:2	0/1:0,42:32:42:1.00:2	0/1:0,12:33:12:1.00:2	./.	0/1:23,24:32:47:0.511:2	0/1:38,36:33:74:0.486:2	0/1:44,40:33:84:0.476:2	./.	0/1:48,35:33:83:0.422:2	0/1:0,75:33:75:1.00:2	0/1:57,54:34:111:0.486:2
chr2	48808882	rs3749144	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,44:34:44:1.00:2	0/1:0,18:32:18:1.00:2	./.	./.	0/1:34,13:33:47:0.277:2	./.	0/1:27,38:32:65:0.585:2	./.	./.	0/1:22,39:33:61:0.639:2	./.
chr2	48808898	rs3749145	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,47:32:47:1.00:2	0/1:0,21:32:21:1.00:2	./.	./.	0/1:36,15:30:51:0.294:2	./.	0/1:31,43:32:74:0.581:2	./.	./.	0/1:23,46:32:69:0.667:2	./.
chr2	48809500	rs375300132	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,42:31:90:0.467:2	./.
chr2	48809593	rs3792234	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,63:32:65:0.969:2	0/1:0,24:32:24:1.00:2	0/1:0,9:33:9:1.00:2	./.	0/1:31,13:31:44:0.295:2	0/1:35,31:32:66:0.470:2	0/1:20,30:32:50:0.600:2	./.	0/1:43,35:33:78:0.449:2	0/1:0,84:32:84:1.00:2	0/1:54,41:33:95:0.432:2
chr2	48809629	rs17397707	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,50:31:93:0.543:2	./.	./.	./.	./.	./.
chr2	48822381	rs2140551	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:32:4:1.00:2	0/1:1,44:31:45:0.978:2	0/1:38,3:33:41:0.073:2	0/1:19,38:30:57:0.667:2	0/1:25,14:32:39:0.359:2	0/1:0,46:31:46:1.00:2	0/1:42,33:32:75:0.440:2	0/1:25,18:30:43:0.419:2	0/1:35,29:32:64:0.453:2
chr2	48873662	rs13396590	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:104,81:31:185:0.438:2	./.	./.	./.	./.	./.	0/1:94,82:33:176:0.466:2
chr2	48873925	rs61755864	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,24:31:52:0.462:2	./.	./.	./.	./.	./.	0/1:73,57:33:130:0.438:2
chr2	48873978	rs10432667	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,40:33:91:0.440:2	./.	./.	0/1:63,4:31:67:0.060:2	0/1:39,44:33:83:0.530:2	./.	./.	./.
chr2	48898798	rs3920390	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,183:31:183:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,182:30:182:1.00:2	0/1:0,128:30:128:1.00:2	0/1:0,178:30:178:1.00:2	0/1:0,189:30:189:1.00:2	0/1:0,181:30:181:1.00:2	0/1:0,186:31:186:1.00:2	0/1:0,180:31:182:1.00:2	0/1:0,185:31:185:1.00:2
chr2	48915721	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:31:99:0.040:2
chr2	48915871	rs11125179	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,41:33:84:0.488:2	0/1:25,26:32:51:0.510:2	0/1:4,6:32:10:0.600:2	0/1:0,83:32:83:1.00:2	./.	./.	0/1:28,38:31:66:0.576:2	0/1:0,113:32:114:1.00:2	0/1:43,56:33:99:0.566:2	0/1:40,44:33:84:0.524:2	0/1:56,40:32:96:0.417:2
chr2	48921375	rs2293275	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,52:32:140:0.371:2	0/1:30,37:32:67:0.552:2	0/1:19,9:31:28:0.321:2	0/1:2,151:32:153:0.987:2	./.	0/1:0,141:32:141:1.00:2	0/1:64,61:33:125:0.488:2	0/1:0,175:32:175:1.00:2	0/1:77,74:33:151:0.490:2	0/1:71,59:32:130:0.454:2	0/1:94,95:32:189:0.503:2
chr2	48921438	rs12470652	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,39:32:95:0.411:2
chr2	48921442	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:32:73:0.055:2	./.	./.	./.	./.	./.
chr2	48948856	rs4637173	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,61:29:64:0.953:2	./.	0/1:52,40:30:92:0.435:2	./.	./.	0/1:74,62:30:136:0.456:2	./.
chr2	48960032	rs10495960	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,58:32:132:0.439:2
chr2	49003458	rs62135453	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:26,18:33:44:0.409:2	0/1:7,11:32:18:0.611:2	./.	./.	0/1:0,41:32:41:1.00:2	0/1:4,49:31:53:0.925:2	0/1:0,35:32:35:1.00:2	0/1:19,24:32:43:0.558:2	./.	./.	./.
chr2	49189921	rs6166	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,91:32:94:0.968:2	0/1:0,54:32:54:1.00:2	0/1:9,9:31:18:0.500:2	0/1:79,56:31:135:0.415:2	0/1:45,20:31:65:0.308:2	0/1:1,119:31:120:0.992:2	0/1:2,78:31:80:0.975:2	0/1:74,52:31:126:0.413:2	0/1:60,37:33:97:0.381:2	0/1:53,37:32:90:0.411:2	./.
chr2	49190415	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:159,4:32:163:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr2	49191041	rs6165	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,68:30:69:0.986:2	0/1:0,48:32:48:1.00:2	0/1:3,4:31:7:0.571:2	0/1:42,38:31:80:0.475:2	0/1:46,36:31:82:0.439:2	0/1:0,59:31:59:1.00:2	0/1:0,58:32:58:1.00:2	0/1:41,43:31:84:0.512:2	0/1:45,49:32:94:0.521:2	0/1:39,17:31:56:0.304:2	./.
chr2	49196000	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:33:41:0.098:2	./.	./.	./.	./.	./.
chr2	49242040	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,34:30:89:0.382:2	./.	./.	./.
chr2	49381532	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,4:29:79:0.051:2	./.	./.	./.	./.	./.	./.
chr2	50149144	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,4:33:119:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr2	50149178	rs184343684	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,58:30:127:0.457:2	./.	./.	./.	./.	./.	./.	./.
chr2	50201110	rs9636391	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,109:29:109:1.00:2	0/1:0,67:28:67:1.00:2	0/1:6,6:31:12:0.500:2	0/1:69,52:29:121:0.430:2	0/1:0,112:29:112:1.00:2	0/1:1,137:29:138:0.993:2	0/1:64,69:29:133:0.519:2	0/1:0,160:29:160:1.00:2	0/1:0,158:30:158:1.00:2	0/1:0,124:29:125:1.00:2	0/1:0,166:29:166:1.00:2
chr2	50464002	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:35:176:0.023:2	./.	./.
chr2	50724817	rs199784139	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,30:32:68:0.441:2	0/1:32,20:32:52:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	50765619	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:33:91:0.044:2	./.
chr2	51254901	rs1045874	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,35:32:72:0.486:2	./.	./.	./.	./.
chr2	53943750	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:34:106:0.038:2	./.	./.	./.	./.
chr2	53955850	rs17521008	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,21:34:51:0.412:2	0/1:15,13:33:28:0.464:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	53956716	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:32:113:0.035:2	./.
chr2	54026181	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,19:32:160:0.119:2	./.
chr2	54035447	rs1127362	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,10:30:17:0.588:2	0/1:5,6:32:11:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	54035508	rs2287345	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,28:33:44:0.636:2	./.	0/1:0,58:32:58:1.00:2
chr2	54041983	rs2542571	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:33,35:33:68:0.515:2	0/1:32,17:31:49:0.347:2	./.	./.	0/1:44,18:32:62:0.290:2	./.	./.	0/1:48,34:31:82:0.415:2	./.	./.	./.
chr2	54081806	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:33:178:0.022:2
chr2	54081923	rs72799239	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,24:28:37:0.649:2	./.	0/1:0,24:31:24:1.00:2
chr2	54115904	rs805400	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,4:29:30:0.133:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	54120025	rs805408	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,28:32:57:0.491:2	0/1:16,21:31:37:0.568:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	54120820	rs805412	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,26:33:63:0.413:2	0/1:23,18:32:41:0.439:2	./.	./.	./.	./.	./.	./.	0/1:45,43:33:88:0.489:2	./.	0/1:66,55:32:121:0.455:2
chr2	54125495	rs805417	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,40:33:74:0.541:2	0/1:22,13:32:35:0.371:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	54127041	rs805423	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:84,102:33:186:0.548:2	0/1:59,45:32:104:0.433:2	./.	./.	0/1:79,36:32:116:0.313:2	./.	./.	0/1:131,61:32:192:0.318:2	0/1:105,85:33:190:0.447:2	./.	0/1:0,185:32:185:1.00:2
chr2	54133744	rs805316	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,59:30:98:0.602:2	0/1:25,27:29:52:0.519:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	54135936	rs2302878	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,59:32:120:0.492:2	./.	./.	./.
chr2	54150237	rs3213775	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,28:34:76:0.368:2	./.	0/1:0,100:34:100:1.00:2
chr2	54152727	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:32:199:0.020:2	./.	./.
chr2	54159155	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:31:100:0.040:2	./.	./.	./.	./.	./.
chr2	54197829	rs78645734	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,6:28:16:0.375:2
chr2	54362645	rs78531993	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,16:33:42:0.381:2	./.	0/1:29,25:31:54:0.463:2
chr2	54482964	rs843704	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,30:32:62:0.484:2	./.	0/1:41,28:33:69:0.406:2	0/1:45,29:32:74:0.392:2	./.	./.	./.
chr2	54482989	rs6740641	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,24:31:74:0.324:2	./.	./.	./.	./.	./.	./.	0/1:25,35:31:60:0.583:2
chr2	54483272	rs61736715	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:38,37:31:75:0.493:2	0/1:27,18:29:45:0.400:2	0/1:3,6:30:9:0.667:2	./.	0/1:56,37:30:94:0.398:2	./.	./.	./.	0/1:49,46:31:95:0.484:2	0/1:36,42:31:78:0.538:2	./.
chr2	54494448	rs1817557	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,57:33:123:0.463:2	./.	./.	./.	./.	./.	./.	0/1:92,86:33:178:0.483:2
chr2	54562012	rs55714450	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,43:32:100:0.430:2	0/1:38,26:32:64:0.406:2	0/1:11,8:31:19:0.421:2	0/1:64,54:31:119:0.458:2	./.	0/1:71,48:31:119:0.403:2	0/1:57,25:32:84:0.305:2	0/1:53,50:31:103:0.485:2	0/1:91,46:32:137:0.336:2	0/1:77,58:32:135:0.430:2	./.
chr2	54587378	rs2280717	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,26:30:62:0.419:2	./.	./.	./.	./.	0/1:35,28:32:63:0.444:2	./.
chr2	54587596	rs2280718	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,52:32:53:0.981:2	0/1:0,36:31:36:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,75:32:75:1.00:2	./.	0/1:0,67:32:67:1.00:2	0/1:0,81:32:81:1.00:2	0/1:63,42:32:105:0.400:2	0/1:0,77:33:77:1.00:2	0/1:38,25:32:63:0.397:2	0/1:38,44:32:82:0.537:2
chr2	54587659	rs13184	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:30:5:0.800:2	0/1:13,23:28:36:0.639:2	./.	0/1:19,21:28:40:0.525:2	./.	./.	./.	./.	0/1:26,22:28:48:0.458:2
chr2	54753596	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,27:31:68:0.397:2	./.	./.
chr2	54844790	rs2229506	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:78,49:30:127:0.386:2	0/1:37,43:32:80:0.538:2	./.	./.	./.	./.	0/1:110,80:32:190:0.421:2	./.	./.	./.	0/1:102,77:32:180:0.430:2
chr2	54858214	rs61730127	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,17:31:60:0.283:2	./.	./.
chr2	54858439	rs1804472	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,56:30:113:0.496:2	./.	./.	./.	./.	./.
chr2	54858511	rs1052788	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,26:31:75:0.347:2	0/1:30,15:31:45:0.333:2	0/1:0,17:31:17:1.00:2	0/1:68,52:31:120:0.433:2	0/1:79,58:31:138:0.423:2	./.	0/1:91,77:31:168:0.458:2	0/1:1,134:31:135:0.993:2	0/1:70,50:32:120:0.417:2	0/1:0,83:31:83:1.00:2	0/1:57,50:31:107:0.467:2
chr2	54858558	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:32:149:0.027:2	./.	./.	./.	./.	./.
chr2	54858664	rs2229503	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,24:31:68:0.353:2	./.	./.
chr2	54882291	rs17344343	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,86:31:179:0.480:2	./.	./.	./.	./.	./.
chr2	54886347	rs1052820	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,28:29:56:0.509:2	0/1:15,14:31:29:0.483:2	0/1:0,10:30:10:1.00:2	0/1:34,34:29:68:0.500:2	0/1:3,54:29:57:0.947:2	./.	0/1:20,46:29:67:0.697:2	0/1:5,113:30:118:0.958:2	0/1:26,29:28:55:0.527:2	0/1:30,41:29:71:0.577:2	0/1:27,35:29:62:0.565:2
chr2	54952332	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,12:14:108:0.111:2
chr2	55040426	rs2631840	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,99:28:99:1.00:2	0/1:0,48:29:48:1.00:2	0/1:0,9:28:9:1.00:2	0/1:0,110:29:110:1.00:2	0/1:61,51:29:112:0.455:2	0/1:0,117:29:117:1.00:2	0/1:59,43:29:102:0.422:2	0/1:3,99:29:102:0.971:2	0/1:0,127:29:127:1.00:2	0/1:53,52:28:105:0.495:2	0/1:0,119:28:119:1.00:2
chr2	55043960	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:32:162:0.025:2	./.	./.	./.	./.	./.
chr2	55071268	rs374203536	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,44:32:90:0.489:2	./.	./.
chr2	55138123	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:31:142:0.028:2	./.	./.	./.	./.
chr2	55155551	rs733916	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,61:32:113:0.540:2	./.	./.	./.	0/1:65,73:32:138:0.529:2	./.	./.	./.
chr2	55176097	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,4:34:56:0.071:2	./.	./.	./.	./.	./.	./.	./.
chr2	55177822	rs77213467	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:32:12:0.500:2	./.	./.	0/1:92,67:32:160:0.421:2	./.	./.	./.	0/1:73,59:32:133:0.447:2	0/1:68,86:31:154:0.558:2
chr2	55186394	rs17346629	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:27:3:1.00:2	0/1:8,13:26:21:0.619:2	0/1:13,8:27:21:0.381:2	0/1:12,19:24:31:0.613:2	0/1:0,23:28:23:1.00:2	0/1:13,18:28:31:0.581:2	0/1:9,7:28:16:0.438:2	0/1:11,6:27:17:0.353:2	0/1:0,26:27:26:1.00:2
chr2	55187367	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,4:28:24:0.167:2	./.	./.	./.
chr2	55189685	rs75479836	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,9:32:30:0.300:2	./.	0/1:34,24:33:58:0.414:2	./.	./.
chr2	55252259	rs111958278	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,36:30:84:0.429:2	./.
chr2	55404794	rs14026	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,4:30:11:0.364:2	0/1:57,45:30:102:0.441:2	0/1:22,17:30:39:0.436:2	0/1:40,40:30:80:0.500:2	0/1:33,16:31:49:0.327:2	./.	./.	0/1:40,40:31:80:0.500:2	0/1:2,107:32:109:0.982:2
chr2	55404883	rs13032294	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,14:32:24:0.583:2	0/1:11,15:32:26:0.577:2	./.	./.	./.	./.	./.
chr2	55407754	rs6716066	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:31:85:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,105:31:105:1.00:2	0/1:0,81:30:81:1.00:2	0/1:0,119:30:119:1.00:2	0/1:0,77:31:77:1.00:2	0/1:0,95:31:95:1.00:2	0/1:0,101:31:101:1.00:2	0/1:0,93:31:93:1.00:2	0/1:0,102:31:102:1.00:2
chr2	55436934	rs9677948	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,8:31:28:0.286:2	0/1:29,14:31:43:0.326:2	./.	0/1:17,16:31:33:0.485:2	./.
chr2	55449412	rs74785222	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,37:32:90:0.411:2	0/1:33,36:32:69:0.522:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	55449464	rs17852670	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,94:33:95:0.989:2	0/1:0,68:33:68:1.00:2	./.	./.	0/1:50,33:33:83:0.398:2	0/1:51,74:32:125:0.592:2	./.	./.	0/1:72,68:34:140:0.486:2	./.	0/1:99,76:33:175:0.434:2
chr2	55460017	rs2028139	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,30:31:64:0.469:2	0/1:34,49:32:83:0.590:2	./.	./.	./.	./.	./.
chr2	55470115	rs11357	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,42:31:42:1.00:2	0/1:5,185:30:190:0.974:2	0/1:122,76:30:198:0.384:2	0/1:115,80:30:196:0.410:2	0/1:4,187:31:191:0.979:2	0/1:0,191:30:191:1.00:2	0/1:117,80:32:197:0.406:2	0/1:0,192:31:192:1.00:2	0/1:113,80:31:193:0.415:2
chr2	55470161	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,7:33:184:0.038:2	./.
chr2	55470195	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,7:32:169:0.041:2	./.
chr2	55470204	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,7:32:166:0.042:2	./.
chr2	55476591	rs2576709	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,76:32:193:0.394:2	./.	./.	./.	./.
chr2	55481322	rs2230370	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,23:33:62:0.371:2	./.	./.	./.	0/1:36,36:31:72:0.500:2	0/1:36,43:32:79:0.544:2	./.	./.
chr2	55490788	rs1134722	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,12:30:19:0.632:2	0/1:10,15:31:25:0.600:2	./.	./.	./.	./.	./.
chr2	55490819	rs1056445	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:33:2:1.00:2	0/1:0,27:30:27:1.00:2	0/1:25,15:30:40:0.375:2	0/1:22,22:29:44:0.500:2	0/1:0,36:31:36:1.00:2	0/1:1,51:31:52:0.981:2	0/1:24,22:31:46:0.478:2	0/1:0,27:31:27:1.00:2	0/1:22,24:31:46:0.522:2
chr2	55522422	rs2589110	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:33:63:1.00:2	0/1:0,40:33:41:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,43:33:43:1.00:2	0/1:1,51:32:52:0.981:2	0/1:0,57:32:58:1.00:2
chr2	55544736	rs41281501	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,29:32:62:0.468:2	./.	./.	./.	./.	./.	./.	./.
chr2	55591176	rs41281505	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,5:33:12:0.417:2	0/1:3,3:33:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	55599655	rs3111411	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:80,53:32:133:0.398:2	0/1:60,35:32:95:0.368:2	./.	0/1:0,145:31:145:1.00:2	0/1:63,34:31:97:0.351:2	0/1:96,65:31:161:0.404:2	0/1:3,48:31:51:0.941:2	0/1:0,116:32:116:1.00:2	0/1:2,130:32:132:0.985:2	0/1:0,141:32:141:1.00:2	0/1:92,97:32:189:0.513:2
chr2	55762957	rs3762513	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,15:30:15:1.00:2	./.	./.	./.	0/1:37,37:30:74:0.500:2	0/1:80,36:30:116:0.310:2	0/1:95,42:31:137:0.307:2	0/1:1,82:31:83:0.988:2	0/1:91,51:31:142:0.359:2
chr2	55771161	rs1045910	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:32:96:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,105:33:106:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,122:32:123:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,122:32:122:1.00:2	0/1:0,140:33:140:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,133:32:133:1.00:2
chr2	55771169	rs1045920	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,73:32:140:0.521:2	./.	./.
chr2	55795482	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,3:33:50:0.060:2	./.	./.	./.	./.	./.
chr2	55805440	rs2903704	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:28:53:1.00:2	0/1:0,33:28:33:1.00:2	0/1:0,7:28:7:1.00:2	0/1:0,72:28:72:1.00:2	0/1:0,36:28:36:1.00:2	0/1:0,76:28:76:1.00:2	0/1:0,40:28:40:1.00:2	0/1:0,66:28:66:1.00:2	0/1:0,88:29:88:1.00:2	0/1:0,63:28:63:1.00:2	0/1:0,66:27:66:1.00:2
chr2	55872565	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,4:32:48:0.083:2	./.	./.	./.	./.	./.	./.
chr2	55873611	.	T	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant3-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:83,6:33:89:0.067:2	./.	0/1:153,8:30:161:0.050:2	./.	./.	./.	./.	0/1:174,4:34:178:0.022:2	0/1:137,8:32:145:0.055:2	./.
chr2	55883317	rs2627765	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,15:32:15:1.00:2	./.	./.	0/1:155,5:33:160:0.031:2	0/1:3,61:33:64:0.953:2	0/1:61,34:32:95:0.358:2	0/1:0,130:33:130:1.00:2	0/1:0,97:33:97:1.00:2	0/1:84,63:33:147:0.429:2
chr2	55912120	rs782572	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:33:3:1.00:2	./.	./.	./.	0/1:6,10:33:16:0.625:2	0/1:24,12:32:36:0.333:2	0/1:0,34:33:34:1.00:2	0/1:0,30:32:30:1.00:2	0/1:27,26:32:53:0.491:2
chr2	55913550	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:29:82:0.049:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	55913557	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:32:79:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	55913565	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:29:73:0.055:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	55914840	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,9:32:15:0.600:2
chr2	56210140	rs41291173	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,29:32:29:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	56216090	rs41291179	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,16:32:33:0.485:2	0/1:17,24:31:41:0.585:2	./.	./.	./.	./.
chr2	56411817	rs35587531	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:32:4:1.00:2
chr2	56420006	rs60028731	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	0/1:11,5:32:16:0.313:2	0/1:4,6:31:10:0.600:2	./.
chr2	56420296	rs75743618	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,5:33:6:0.833:2	./.	./.	./.	./.	./.	0/1:47,39:33:86:0.453:2	0/1:30,31:33:61:0.508:2	./.
chr2	56420550	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,4:32:67:0.060:2	./.	./.	./.	./.	./.	./.
chr2	58275666	rs986512	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:31:45:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,31:29:31:1.00:2	0/1:15,11:31:26:0.423:2	0/1:0,37:29:37:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,25:30:25:1.00:2	./.	0/1:0,37:31:37:1.00:2	0/1:0,56:31:56:1.00:2
chr2	58316814	rs1051061	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,124:32:183:0.678:2	0/1:53,49:32:102:0.480:2	0/1:16,5:32:21:0.238:2	0/1:86,89:32:175:0.509:2	0/1:61,58:31:119:0.487:2	./.	0/1:2,111:32:113:0.982:2	0/1:1,156:32:157:0.994:2	./.	0/1:97,70:32:167:0.419:2	0/1:70,103:32:173:0.595:2
chr2	58350340	rs17049354	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:34:82:0.049:2
chr2	58388696	rs848291	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,68:33:116:0.586:2	0/1:28,28:32:56:0.500:2	0/1:8,12:32:20:0.600:2	0/1:76,71:32:147:0.483:2	0/1:54,49:31:103:0.476:2	0/1:1,128:32:129:0.992:2	./.	./.	0/1:0,114:33:115:1.00:2	0/1:53,51:33:104:0.490:2	0/1:110,73:32:183:0.399:2
chr2	58453930	rs79588315	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:93,92:32:185:0.497:2	0/1:64,54:32:118:0.458:2	./.	0/1:98,87:33:185:0.470:2	./.	./.	./.	./.	./.	0/1:98,68:32:166:0.410:2	./.
chr2	58468410	rs201708705	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,4:29:41:0.098:2	./.	./.	./.	./.	./.	./.	./.
chr2	59504661	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,4:32:12:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	60687959	rs7569946	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:32:24:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,21:32:21:1.00:2	0/1:12,12:30:24:0.500:2	./.	0/1:12,3:32:15:0.200:2	0/1:13,10:31:23:0.435:2	0/1:0,26:32:26:1.00:2	0/1:0,13:31:13:1.00:2	0/1:7,11:31:18:0.611:2
chr2	60689522	rs61748090	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,27:30:75:0.360:2	./.	./.	./.	./.	0/1:55,48:31:103:0.466:2	./.	./.
chr2	61009813	rs67779326	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:27:8:0.750:2	./.	0/1:13,9:31:22:0.409:2	./.	./.	0/1:4,6:32:10:0.600:2	0/1:8,5:29:13:0.385:2	0/1:14,11:30:25:0.440:2
chr2	61009909	rs10197672	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:80,56:31:136:0.412:2	0/1:35,28:32:63:0.444:2	0/1:15,9:30:24:0.375:2	0/1:0,122:31:122:1.00:2	0/1:53,30:31:83:0.361:2	0/1:94,44:31:138:0.319:2	0/1:38,12:33:50:0.240:2	./.	0/1:2,111:31:113:0.982:2	0/1:2,103:31:105:0.981:2	0/1:0,151:32:151:1.00:2
chr2	61108996	rs842650	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:31:7:0.571:2	0/1:10,4:31:14:0.286:2	./.	./.	./.
chr2	61144133	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:121,4:33:125:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr2	61175312	rs12479056	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,36:34:69:0.522:2	0/1:28,14:32:42:0.333:2	0/1:0,15:33:15:1.00:2	0/1:44,51:32:95:0.537:2	0/1:0,67:32:67:1.00:2	0/1:0,85:32:85:1.00:2	0/1:50,41:33:91:0.451:2	0/1:50,55:32:105:0.524:2	0/1:40,46:33:86:0.535:2	0/1:0,76:32:76:1.00:2	0/1:47,52:33:99:0.525:2
chr2	61188596	rs200065642	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:64,17:19:81:0.210:2	./.	./.	0/1:71,24:15:95:0.253:2	0/1:62,13:12:75:0.173:2	0/1:67,19:11:86:0.221:2	0/1:73,17:11:90:0.189:2	0/1:87,21:17:110:0.194:2	0/1:97,20:11:117:0.171:2	./.	0/1:97,21:17:118:0.178:2
chr2	61275819	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:33:180:0.022:2
chr2	61304271	rs1729659	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:35,32:33:67:0.478:2	0/1:21,14:31:35:0.400:2	0/1:0,17:33:17:1.00:2	./.	./.	0/1:49,42:32:91:0.462:2	0/1:35,26:33:61:0.426:2	0/1:34,29:32:63:0.460:2	./.	0/1:39,37:33:76:0.487:2	./.
chr2	61310383	rs74574747	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:32:151:0.026:2	./.	./.	./.
chr2	61344546	rs115290120	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,4:33:15:0.267:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	61385100	rs1665258	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,3:31:9:0.333:2	0/1:40,42:31:82:0.512:2	0/1:89,66:31:155:0.426:2	0/1:69,53:31:122:0.434:2	./.	0/1:50,61:31:111:0.550:2	0/1:52,47:32:99:0.475:2	0/1:51,36:32:87:0.414:2	./.
chr2	61385105	rs1729671	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:31:7:0.429:2	0/1:39,43:33:82:0.524:2	0/1:81,61:31:142:0.430:2	0/1:64,46:32:110:0.418:2	./.	0/1:42,54:31:96:0.563:2	0/1:48,45:32:93:0.484:2	0/1:49,36:32:85:0.424:2	./.
chr2	61389737	rs1729674	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,6:31:13:0.462:2	0/1:1,119:32:120:0.992:2	0/1:38,49:32:87:0.563:2	0/1:42,81:32:123:0.659:2	./.	0/1:68,48:33:116:0.414:2	0/1:57,64:34:121:0.529:2	0/1:70,63:33:133:0.474:2	./.
chr2	61415492	rs14170	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,35:29:36:0.972:2	0/1:12,15:29:27:0.556:2	./.	./.	0/1:27,23:28:50:0.460:2	0/1:24,21:28:45:0.467:2	0/1:16,22:27:38:0.579:2	./.
chr2	61450454	rs2123111	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,17:32:17:1.00:2	0/1:0,16:31:16:1.00:2	0/1:3,3:33:6:0.500:2	./.	0/1:6,11:32:17:0.647:2	0/1:0,17:31:17:1.00:2	0/1:0,14:31:14:1.00:2	0/1:15,13:32:28:0.464:2	0/1:16,13:32:29:0.448:2	0/1:10,7:32:17:0.412:2	0/1:0,29:32:29:1.00:2
chr2	61455771	rs6730200	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,15:33:16:0.938:2	./.	./.	./.	0/1:17,6:33:23:0.261:2	./.	./.	./.	./.	0/1:12,13:33:25:0.520:2	0/1:15,14:31:29:0.483:2
chr2	61456709	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,57:33:93:0.613:2	./.	./.	./.	./.
chr2	61483548	rs72811482	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,20:31:39:0.513:2	./.	./.	0/1:111,80:31:191:0.419:2	0/1:107,89:31:196:0.454:2	./.	./.	./.	./.
chr2	61484258	rs149614448	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:5,8:33:13:0.615:2	./.	./.	./.	0/1:1,6:32:7:0.857:2	./.	./.	./.	./.	./.	./.
chr2	61522123	rs13014347	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,119:33:119:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,70:33:70:1.00:2	0/1:0,142:32:142:1.00:2	0/1:0,144:33:144:1.00:2	0/1:0,117:33:117:1.00:2	0/1:0,143:33:143:1.00:2
chr2	61566536	rs17008405	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,9:32:15:0.600:2	0/1:183,4:34:187:0.021:2	./.	./.	0/1:61,55:33:116:0.474:2	./.	./.	./.	./.
chr2	61575308	rs6722430	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,157:29:158:0.994:2	0/1:0,133:29:133:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,166:30:166:1.00:2	0/1:0,153:29:153:1.00:2	0/1:1,156:29:157:0.994:2	0/1:1,167:29:168:0.994:2	0/1:2,165:29:167:0.988:2	0/1:0,174:30:174:1.00:2	0/1:0,147:30:147:1.00:2	0/1:0,176:29:176:1.00:2
chr2	61577435	rs2166720	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:51,25:29:76:0.329:2	0/1:16,26:30:43:0.619:2	0/1:12,4:31:16:0.250:2	./.	./.	0/1:52,47:29:99:0.475:2	0/1:40,24:30:64:0.375:2	./.	./.	./.	./.
chr2	61647901	rs778155	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,58:33:58:1.00:2	0/1:0,40:32:40:1.00:2	./.	./.	0/1:34,33:32:67:0.493:2	0/1:25,54:32:79:0.684:2	0/1:32,43:33:75:0.573:2	0/1:24,32:32:56:0.571:2	0/1:33,54:33:87:0.621:2	0/1:35,33:33:68:0.485:2	0/1:0,73:33:73:1.00:2
chr2	62065759	rs6545910	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,147:30:154:0.955:2	./.	./.	./.	./.	0/1:97,65:31:162:0.401:2	./.	./.
chr2	62066566	rs200331923	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,19:14:176:0.108:2	0/1:123,20:18:143:0.140:2
chr2	62066927	rs4672457	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,149:29:149:1.00:2	0/1:0,97:29:98:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,137:29:137:1.00:2	0/1:1,118:30:119:0.992:2	0/1:0,169:29:169:1.00:2	0/1:0,116:29:116:1.00:2	0/1:0,139:29:139:1.00:2	0/1:0,177:30:177:1.00:2	0/1:0,138:29:138:1.00:2	0/1:0,175:29:175:1.00:2
chr2	62067433	rs17513722	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,62:32:140:0.443:2	0/1:97,85:31:182:0.467:2	0/1:75,78:32:153:0.510:2	./.	0/1:90,98:33:189:0.521:2	./.	./.
chr2	62069358	rs11125895	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:40,26:32:66:0.394:2	0/1:19,12:32:31:0.387:2	0/1:4,3:32:7:0.429:2	./.	0/1:37,21:32:58:0.362:2	./.	./.	0/1:37,21:32:58:0.362:2	./.	./.	./.
chr2	62081012	rs4270331	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:29:66:1.00:2	0/1:0,46:29:47:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,84:30:84:1.00:2	0/1:0,115:29:115:1.00:2	0/1:0,119:30:119:1.00:2	0/1:0,86:30:86:1.00:2	0/1:0,96:30:97:1.00:2	0/1:0,103:30:103:1.00:2	0/1:0,62:29:62:1.00:2	0/1:0,81:30:81:1.00:2
chr2	62100380	rs76248080	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,54:30:129:0.419:2	./.	0/1:56,47:31:103:0.456:2	./.
chr2	62112222	rs35876878	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,32:30:32:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,2:31:2:1.00:2	./.	0/1:0,21:27:21:1.00:2	0/1:20,9:30:29:0.310:2	0/1:6,8:26:14:0.571:2	0/1:0,30:29:30:1.00:2	0/1:21,13:31:34:0.382:2	0/1:13,12:29:25:0.480:2	./.
chr2	62228013	rs55677935	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,12:30:20:0.600:2	./.	./.	./.	./.	./.	./.
chr2	62450631	rs3811616	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:23,21:33:44:0.477:2	0/1:10,9:32:19:0.474:2	0/1:4,5:33:9:0.556:2	./.	0/1:14,16:32:30:0.533:2	0/1:17,10:32:27:0.370:2	0/1:6,9:32:15:0.600:2	./.	./.	0/1:8,9:33:17:0.529:2	./.
chr2	62450743	rs1136151	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:75,43:29:118:0.364:2	0/1:57,29:28:86:0.337:2	0/1:13,7:28:20:0.350:2	./.	0/1:70,43:29:113:0.381:2	0/1:94,70:29:164:0.427:2	0/1:57,35:30:93:0.380:2	./.	./.	0/1:81,68:30:149:0.456:2	./.
chr2	62451422	rs13393608	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:35,24:33:59:0.407:2	0/1:11,7:31:18:0.389:2	0/1:2,3:33:5:0.600:2	./.	0/1:29,18:32:47:0.383:2	0/1:18,23:32:41:0.561:2	0/1:13,19:32:32:0.594:2	./.	./.	0/1:8,21:32:29:0.724:2	./.
chr2	62729653	rs6713096	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,23:31:39:0.590:2	0/1:7,7:30:14:0.500:2	./.	./.	./.	./.	./.	./.	0/1:38,36:31:74:0.486:2	./.	./.
chr2	62729674	rs4672527	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:33:30:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,8:33:8:1.00:2	0/1:23,15:33:38:0.395:2	0/1:1,26:33:27:0.963:2	0/1:0,50:32:50:1.00:2	0/1:19,26:33:45:0.578:2	0/1:20,37:33:57:0.649:2	0/1:0,51:33:51:1.00:2	0/1:0,39:33:39:1.00:2	0/1:35,27:33:62:0.435:2
chr2	62733189	rs17854454	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,32:31:55:0.582:2	0/1:18,18:32:36:0.500:2	./.	./.	./.	./.	./.	./.	0/1:2,88:33:90:0.978:2	0/1:30,40:32:71:0.571:2	0/1:30,30:32:60:0.500:2
chr2	62733201	rs78110679	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,30:29:53:0.566:2	0/1:17,16:31:33:0.485:2	./.	./.	./.	./.	./.	./.	0/1:35,51:30:86:0.593:2	./.	./.
chr2	62733253	rs11676567	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,29:32:29:1.00:2	0/1:0,24:32:24:1.00:2	./.	./.	0/1:11,26:31:38:0.703:2	./.	./.	./.	0/1:1,49:31:50:0.980:2	0/1:18,23:32:41:0.561:2	0/1:21,16:31:37:0.432:2
chr2	62991440	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:30:117:0.034:2	./.	./.	./.
chr2	62998485	rs75835972	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,52:33:88:0.591:2
chr2	63170921	rs2302567	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,28:32:90:0.311:2	./.	./.	./.	./.	./.	./.
chr2	63175759	rs150604640	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,27:30:60:0.450:2	0/1:18,22:29:40:0.550:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	63283178	rs17850223	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,92:32:194:0.474:2	./.	./.	./.	./.	./.	./.
chr2	63419783	rs113738692	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,33:31:81:0.407:2	0/1:24,8:32:32:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	63666961	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:32:48:0.083:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	63798725	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:32:186:0.022:2	./.	./.
chr2	63821643	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,4:33:114:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr2	63821667	rs137923103	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:30:103:0.039:2	./.
chr2	64069311	rs4671534	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,6:30:11:0.545:2
chr2	64113480	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2	./.	./.
chr2	64124722	rs11558741	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,12:31:21:0.571:2	./.	./.	./.	0/1:18,5:32:23:0.217:2	./.	./.
chr2	64139470	rs147421356	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,52:31:103:0.505:2	./.
chr2	64148455	rs187385779	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:25:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	64189566	rs17028275	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,17:32:30:0.567:2	./.
chr2	64327544	rs329498	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:28,26:34:54:0.481:2	0/1:14,16:32:30:0.533:2	./.	./.	./.	./.	0/1:1,45:32:46:0.978:2	0/1:39,28:33:67:0.418:2	./.	./.	./.
chr2	64327592	rs329497	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:37,42:33:79:0.532:2	0/1:17,21:32:38:0.553:2	./.	./.	./.	./.	0/1:2,83:32:85:0.976:2	0/1:51,42:32:93:0.452:2	./.	./.	./.
chr2	64335394	rs17753351	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,71:29:74:0.959:2	./.	./.	./.	./.
chr2	64682792	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:33:174:0.023:2	./.	./.	./.
chr2	64780256	rs149531891	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,21:30:61:0.344:2	./.	./.	./.	./.	./.	./.
chr2	65216842	rs201175768	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,5:31:9:0.556:2	./.	./.
chr2	65217089	rs7559202	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,5:30:13:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	65245365	rs759458	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,4:31:12:0.333:2	0/1:36,45:32:81:0.556:2	0/1:73,50:32:123:0.407:2	./.	./.	./.	./.	./.	./.
chr2	65248271	rs7563131	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,4:32:11:0.364:2	0/1:17,19:32:36:0.528:2	./.	./.	./.	./.	./.	./.	./.
chr2	65296798	rs7572857	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,27:30:57:0.474:2	./.	./.	./.	./.	./.	./.
chr2	65298839	rs17849707	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,29:30:61:0.475:2	./.	./.	./.	./.	./.	0/1:31,24:30:55:0.436:2
chr2	65298998	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:26:44:0.091:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	65299298	rs2723088	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:29:7:0.571:2	./.	./.	./.	./.	./.	./.	0/1:0,40:29:41:1.00:2	./.
chr2	65299300	rs2723089	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:34:7:0.571:2	./.	./.	./.	./.	./.	./.	0/1:0,41:32:41:1.00:2	./.
chr2	65299766	rs55952639	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,29:32:53:0.547:2
chr2	65300014	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,47:30:91:0.516:2	./.	./.	./.	./.
chr2	65315679	rs61748092	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,33:33:65:0.508:2
chr2	65315691	rs200968796	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,4:31:89:0.045:2	./.	./.	./.	./.	./.	./.	./.
chr2	65315768	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,7:31:10:0.700:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	65325161	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:31:55:0.073:2	./.	./.	./.	0/1:111,6:30:117:0.051:2
chr2	65331875	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	65488436	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,5:32:186:0.027:2	./.	0/1:184,7:31:192:0.037:2	0/1:178,11:32:189:0.058:2	./.
chr2	65488494	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,5:32:160:0.031:2	./.	0/1:153,7:34:160:0.044:2	0/1:133,15:32:148:0.101:2	./.
chr2	65488509	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,7:29:143:0.049:2	./.	./.	./.	./.
chr2	65495811	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,5:31:164:0.030:2	./.	./.	./.	./.	./.
chr2	65495834	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:32:167:0.024:2	./.	./.	./.	./.	./.
chr2	65540905	rs8827	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,36:31:62:0.581:2	0/1:14,16:31:30:0.533:2	./.	0/1:31,32:32:63:0.508:2	0/1:37,26:32:63:0.413:2	./.	0/1:37,3:31:40:0.075:2	./.	./.	0/1:0,58:31:58:1.00:2	0/1:0,45:31:45:1.00:2
chr2	65540983	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:28:11:0.364:2	./.
chr2	65541087	rs146072471	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,7:32:12:0.583:2	./.	./.	./.	./.	./.
chr2	65561392	rs4671658	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,10:32:25:0.400:2	0/1:7,5:32:12:0.417:2	./.	0/1:13,14:31:27:0.519:2	0/1:19,7:31:26:0.269:2	./.	./.	./.	./.	0/1:17,13:30:30:0.433:2	0/1:0,33:31:33:1.00:2
chr2	65571889	rs61748094	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,83:33:146:0.568:2	./.	./.
chr2	65571997	rs61741513	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,17:33:46:0.370:2	./.	./.
chr2	65604767	rs268121	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,33:31:102:0.324:2	./.	./.	./.	./.	./.	./.	./.
chr2	66667033	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,14:11:57:0.246:2	./.	./.	./.	./.
chr2	66667046	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,5:22:55:0.091:2	./.	./.	./.	./.	./.	./.	./.
chr2	67630476	rs13036061	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,9:30:35:0.257:2	./.	./.	0/1:10,10:31:20:0.500:2	0/1:13,7:29:20:0.350:2	./.	./.	./.
chr2	67630980	rs3770657	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,110:32:110:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,87:31:87:1.00:2	./.	0/1:0,95:31:95:1.00:2	0/1:2,81:32:83:0.976:2	0/1:0,108:31:108:1.00:2	0/1:0,126:32:126:1.00:2	0/1:35,47:31:82:0.573:2	0/1:2,113:32:115:0.983:2
chr2	67631129	rs35777125	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,25:32:55:0.455:2	./.	./.	0/1:16,15:31:31:0.484:2	0/1:25,19:33:44:0.432:2	./.	./.	./.
chr2	67631389	rs184407723	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,29:31:78:0.372:2	./.	./.	./.	./.	./.	./.	./.
chr2	67631395	rs10496153	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,30:32:82:0.366:2	./.	./.	0/1:21,22:32:43:0.512:2	0/1:48,25:32:73:0.342:2	./.	./.	./.
chr2	67631744	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,8:31:145:0.055:2
chr2	67631831	rs61740794	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,77:32:79:0.975:2	0/1:3,47:32:50:0.940:2	0/1:5,3:32:8:0.375:2	0/1:38,39:32:77:0.506:2	0/1:75,4:33:79:0.051:2	0/1:1,64:31:65:0.985:2	./.	0/1:58,33:32:91:0.363:2	0/1:2,97:33:99:0.980:2	0/1:45,23:32:68:0.338:2	0/1:3,85:32:88:0.966:2
chr2	67632125	rs3770655	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:32:63:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,59:31:59:1.00:2	./.	0/1:0,59:31:59:1.00:2	0/1:1,38:32:39:0.974:2	0/1:0,77:31:77:1.00:2	0/1:0,69:33:69:1.00:2	0/1:24,31:32:55:0.564:2	0/1:0,78:32:78:1.00:2
chr2	67632214	rs1063571	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,20:31:44:0.455:2	./.	./.	0/1:29,21:31:50:0.420:2	0/1:26,18:32:44:0.409:2	./.	./.	./.
chr2	68270068	rs10444	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,54:33:54:1.00:2	0/1:2,24:32:26:0.923:2	./.	0/1:54,24:33:78:0.308:2	./.	./.	0/1:57,18:32:75:0.240:2	0/1:57,17:32:74:0.230:2	0/1:64,40:32:104:0.385:2	0/1:64,24:32:88:0.273:2	./.
chr2	68274434	rs77388906	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:86,17:16:105:0.165:2	./.	./.	0/1:90,32:14:123:0.262:2	0/1:74,22:10:96:0.229:2	0/1:79,27:12:106:0.255:2	0/1:74,21:11:95:0.221:2	0/1:103,29:10:132:0.220:2	./.	0/1:85,17:18:103:0.167:2	0/1:95,24:15:120:0.202:2
chr2	68364478	rs13009282	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,11:30:15:0.733:2	0/1:45,62:30:107:0.579:2	./.	./.	0/1:38,36:29:74:0.486:2	0/1:74,50:30:124:0.403:2	./.	./.	0/1:5,99:30:104:0.952:2
chr2	68384508	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,21:32:65:0.323:2	./.	./.	./.	./.	./.
chr2	68385097	rs2044693	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,42:30:42:1.00:2	0/1:0,29:29:29:1.00:2	./.	0/1:32,26:31:58:0.448:2	0/1:0,44:30:44:1.00:2	0/1:41,25:30:66:0.379:2	0/1:0,51:30:51:1.00:2	0/1:0,42:30:42:1.00:2	0/1:27,29:30:56:0.518:2	0/1:31,13:29:44:0.295:2	0/1:0,66:30:66:1.00:2
chr2	68388823	rs1137930	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,68:33:68:1.00:2	0/1:0,52:32:52:1.00:2	./.	./.	0/1:0,43:32:43:1.00:2	0/1:20,48:32:68:0.706:2	0/1:12,22:32:34:0.647:2	0/1:32,29:33:61:0.475:2	0/1:54,31:34:85:0.365:2	0/1:25,37:32:62:0.597:2	./.
chr2	68401898	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:31:114:0.035:2	./.	./.	./.
chr2	68401928	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:33:81:0.049:2	./.	./.	./.
chr2	68413725	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:34:95:0.042:2	./.	./.	./.	./.
chr2	68415767	rs687	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,77:31:81:0.951:2	0/1:0,44:31:44:1.00:2	./.	./.	0/1:0,36:29:36:1.00:2	0/1:62,41:30:103:0.398:2	0/1:35,33:30:68:0.485:2	0/1:63,42:31:105:0.400:2	0/1:66,51:31:117:0.436:2	0/1:61,40:31:102:0.396:2	./.
chr2	68511584	rs735815	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:29,21:32:50:0.420:2	0/1:20,17:32:37:0.459:2	./.	./.	0/1:36,24:32:60:0.400:2	0/1:38,36:31:74:0.486:2	0/1:24,14:32:38:0.368:2	0/1:0,73:32:73:1.00:2	0/1:49,25:32:74:0.338:2	0/1:29,20:31:49:0.408:2	0/1:49,36:32:85:0.424:2
chr2	68546374	rs4671898	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,33:33:60:0.550:2	0/1:25,11:32:36:0.306:2	0/1:6,7:31:13:0.538:2	0/1:0,97:33:97:1.00:2	./.	0/1:50,72:32:122:0.590:2	0/1:1,132:32:133:0.992:2	0/1:80,64:32:144:0.444:2	0/1:45,48:33:93:0.516:2	0/1:0,71:31:71:1.00:2	0/1:2,86:32:88:0.977:2
chr2	68546449	rs13025842	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,7:28:9:0.778:2	0/1:55,33:30:88:0.375:2	./.	0/1:62,52:30:114:0.456:2	0/1:3,105:31:108:0.972:2	./.	0/1:57,34:32:91:0.374:2	0/1:36,31:29:67:0.463:2	0/1:3,66:31:69:0.957:2
chr2	68607947	rs3816281	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:20,23:30:43:0.535:2	0/1:5,7:31:12:0.583:2	./.	./.	0/1:13,20:30:33:0.606:2	./.	./.	0/1:12,28:29:40:0.700:2	0/1:15,30:32:45:0.667:2	0/1:18,10:31:28:0.357:2	./.
chr2	68613710	rs2070171	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:52,33:31:85:0.388:2	0/1:36,20:31:56:0.357:2	./.	0/1:49,47:31:96:0.490:2	./.	0/1:66,47:31:113:0.416:2	0/1:72,58:31:130:0.446:2	./.	0/1:59,59:32:118:0.500:2	./.	0/1:55,56:32:111:0.505:2
chr2	68622914	rs1063479	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:32:102:1.00:2	0/1:0,77:32:77:1.00:2	0/1:13,5:30:18:0.278:2	0/1:72,74:31:146:0.507:2	0/1:0,154:31:154:1.00:2	0/1:74,71:31:146:0.490:2	0/1:0,144:31:144:1.00:2	0/1:0,179:31:179:1.00:2	0/1:0,147:32:147:1.00:2	0/1:0,134:31:134:1.00:2	0/1:99,80:32:179:0.447:2
chr2	68717337	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:31:64:0.063:2	./.	./.	./.	./.	./.
chr2	68729992	rs11902811	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,27:30:83:0.325:2	./.	0/1:48,35:30:83:0.422:2	./.	./.	./.	./.
chr2	68740335	rs35925899	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,42:31:80:0.525:2	./.	./.	./.	./.	./.	./.	./.
chr2	68753240	rs35002937	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,22:29:34:0.647:2	./.	0/1:23,23:31:46:0.500:2	./.	./.	./.	0/1:36,25:32:61:0.410:2
chr2	68765205	rs13404469	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,87:32:152:0.572:2
chr2	68794528	rs6751531	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,22:31:47:0.468:2	./.	0/1:29,10:31:39:0.256:2	./.	./.	./.	0/1:50,27:31:77:0.351:2
chr2	68873071	rs7570797	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:118,81:29:200:0.407:2	./.	0/1:116,78:29:194:0.402:2	./.	./.	./.	./.
chr2	68882138	rs34234285	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,78:32:145:0.538:2	./.	./.	./.
chr2	68882468	rs6722313	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,30:31:30:1.00:2	0/1:95,89:30:184:0.484:2	./.	0/1:0,175:30:175:1.00:2	./.	./.	0/1:84,101:31:185:0.546:2	./.	./.
chr2	69040500	rs2280310	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,26:31:58:0.448:2	./.	./.	./.	0/1:34,24:32:58:0.414:2	./.
chr2	69040504	rs61758703	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,29:31:57:0.509:2	./.	./.	./.	./.	./.	./.
chr2	69046406	rs17604346	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,22:31:36:0.611:2	./.
chr2	69049939	rs4241344	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,6:30:12:0.500:2	./.	./.	./.	0/1:12,4:31:16:0.250:2	./.
chr2	69049941	rs10177248	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:12,4:28:16:0.250:2	./.	./.	0/1:11,9:27:20:0.450:2	./.	0/1:6,5:29:11:0.455:2	./.	./.	0/1:5,17:30:22:0.773:2	./.	0/1:12,13:26:25:0.520:2
chr2	69093312	rs2231344	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,88:32:186:0.473:2	./.	./.	./.	./.	./.	./.	./.
chr2	69173570	rs1128272	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,11:32:38:0.289:2	./.	./.	./.	./.	./.	./.
chr2	69204629	rs35624281	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	69204671	rs9808077	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:32:10:0.300:2	./.	./.	./.	./.	./.	./.	0/1:80,52:32:132:0.394:2	./.
chr2	69300191	rs77687153	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,47:28:93:0.505:2	./.	./.	./.	./.
chr2	69300243	rs10202939	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	69372443	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,4:29:38:0.105:2	./.	./.	./.	./.	./.	./.	./.
chr2	69472476	rs147959058	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,8:26:16:0.500:2	./.	0/1:4,7:27:11:0.636:2
chr2	69627517	rs200732109	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,6:35:144:0.042:2	./.	./.
chr2	69659126	rs4453725	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,15:33:34:0.441:2	0/1:12,13:33:25:0.520:2	0/1:0,4:32:4:1.00:2	0/1:16,28:33:44:0.636:2	0/1:13,17:32:30:0.567:2	0/1:19,15:30:34:0.441:2	0/1:15,23:32:38:0.605:2	./.	0/1:0,43:33:43:1.00:2	0/1:0,31:33:31:1.00:2	0/1:2,48:32:50:0.960:2
chr2	69704046	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:32:136:0.029:2	./.	./.
chr2	69709919	rs6721259	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,8:30:39:0.205:2	0/1:34,32:32:66:0.485:2	./.	./.	./.	./.	./.
chr2	69741609	rs2276689	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,37:31:81:0.457:2	./.	0/1:44,52:31:96:0.542:2	0/1:44,44:31:88:0.500:2	0/1:1,96:31:97:0.990:2	0/1:44,34:32:78:0.436:2	./.	./.
chr2	69741801	rs6757825	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,54:31:99:0.551:2	0/1:46,46:31:92:0.500:2	./.	./.	./.	./.	./.
chr2	69741854	rs6715776	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,14:32:14:1.00:2	0/1:1,89:33:90:0.989:2	0/1:1,79:31:80:0.988:2	0/1:0,99:32:99:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,106:33:106:1.00:2	0/1:0,99:33:100:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,89:32:89:1.00:2
chr2	69746296	rs7603932	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,49:31:109:0.450:2	./.	./.	./.	./.	./.
chr2	70015181	rs10496171	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,52:32:52:1.00:2	./.	./.	./.	0/1:25,18:32:43:0.419:2
chr2	70033584	rs2228203	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,90:31:183:0.492:2	0/1:92,88:32:181:0.489:2	./.	0/1:101,85:32:186:0.457:2
chr2	70057196	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,33:8:164:0.201:2	0/1:122,38:8:160:0.238:2	./.	./.	./.
chr2	70076854	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:34:184:0.022:2
chr2	70076870	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:35:167:0.024:2	./.	./.
chr2	70088441	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:32:131:0.031:2	./.
chr2	70096881	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,46:32:103:0.447:2	./.	./.	./.	./.	./.
chr2	70096973	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:32:130:0.031:2	./.	./.	./.	./.	./.
chr2	70162534	rs2228183	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,8:32:16:0.500:2	./.	./.	./.	0/1:2,143:33:145:0.986:2	0/1:85,58:32:143:0.406:2	0/1:1,185:34:187:0.995:2	./.	0/1:0,140:33:140:1.00:2
chr2	70188676	rs3796097	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,9:30:17:0.529:2	0/1:3,65:28:68:0.956:2	./.	./.	./.	0/1:50,41:29:92:0.451:2	0/1:0,52:29:52:1.00:2	0/1:34,34:28:68:0.500:2	0/1:20,12:26:32:0.375:2
chr2	70189141	rs77274135	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,23:31:37:0.622:2	./.	./.	./.	./.	./.	./.
chr2	70315518	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:31:71:0.056:2	./.	./.	./.	./.	./.
chr2	70377653	rs12989348	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,15:32:35:0.429:2	./.	0/1:22,19:31:41:0.463:2
chr2	70408591	rs148471734	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:28:51:0.078:2
chr2	70485320	rs11556184	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,18:32:31:0.581:2	./.	0/1:8,13:29:21:0.619:2
chr2	70488470	rs2706762	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:58,42:32:100:0.420:2	0/1:29,25:30:54:0.463:2	0/1:5,14:32:19:0.737:2	./.	0/1:50,31:32:81:0.383:2	0/1:51,41:31:92:0.446:2	./.	0/1:81,74:31:155:0.477:2	./.	0/1:56,47:31:104:0.456:2	./.
chr2	70515215	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:33:69:0.058:2	./.	./.
chr2	70516458	rs75283365	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:10,17:33:27:0.630:2	0/1:7,9:32:16:0.563:2	./.	./.	./.	./.	./.	0/1:17,13:32:30:0.433:2	./.	./.	./.
chr2	70524577	rs2618235	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,26:30:48:0.542:2	./.	./.	0/1:40,33:32:73:0.452:2	./.	0/1:25,19:32:44:0.432:2	./.	0/1:20,17:31:37:0.459:2
chr2	70677994	rs2166975	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:35,53:31:88:0.602:2	0/1:22,25:32:47:0.532:2	./.	./.	./.	./.	./.	0/1:84,47:31:131:0.359:2	0/1:0,124:32:124:1.00:2	0/1:38,41:31:79:0.519:2	./.
chr2	70692755	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,3:33:40:0.075:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	70900403	rs4984	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,20:31:77:0.260:2	./.	./.	0/1:0,51:32:51:1.00:2	./.	./.	./.	./.
chr2	70933414	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:29:87:0.046:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	71004492	rs56316086	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:43,19:32:62:0.306:2	0/1:15,20:31:35:0.571:2	./.	./.	0/1:2,26:32:28:0.929:2	./.	./.	./.	0/1:51,20:33:71:0.282:2	./.	./.
chr2	71004494	rs56135050	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:43,19:32:62:0.306:2	0/1:16,20:32:36:0.556:2	./.	./.	0/1:2,26:32:28:0.929:2	./.	./.	./.	0/1:51,20:31:71:0.282:2	./.	./.
chr2	71012604	rs7566541	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,72:32:144:0.500:2	0/1:61,45:32:106:0.425:2	0/1:11,8:31:19:0.421:2	0/1:1,176:31:177:0.994:2	0/1:0,193:31:193:1.00:2	0/1:75,84:31:159:0.528:2	0/1:0,164:32:164:1.00:2	0/1:0,194:32:194:1.00:2	0/1:96,94:32:191:0.495:2	0/1:86,63:32:149:0.423:2	0/1:96,66:32:162:0.407:2
chr2	71012734	rs71647804	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:73,83:32:156:0.532:2	0/1:61,58:32:119:0.487:2	./.	0/1:1,161:32:162:0.994:2	0/1:0,159:32:159:1.00:2	0/1:82,81:32:163:0.497:2	0/1:0,166:32:166:1.00:2	0/1:0,183:32:183:1.00:2	0/1:112,75:33:187:0.401:2	0/1:81,76:32:157:0.484:2	0/1:94,97:32:191:0.508:2
chr2	71043461	rs722896	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,31:30:31:1.00:2	0/1:79,84:31:163:0.515:2	0/1:33,64:31:97:0.660:2	0/1:69,76:31:145:0.524:2	0/1:2,156:32:158:0.987:2	./.	0/1:97,90:32:187:0.481:2	0/1:76,72:32:148:0.486:2	./.
chr2	71043467	rs35381972	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,83:32:171:0.485:2	./.	./.	./.
chr2	71044211	rs2075221	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,14:32:23:0.609:2	0/1:8,4:33:12:0.333:2	0/1:8,6:31:14:0.429:2	0/1:0,15:32:15:1.00:2	./.	0/1:13,16:33:29:0.552:2	0/1:0,17:31:17:1.00:2	./.
chr2	71058184	rs13421115	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:49,35:31:85:0.417:2	0/1:17,17:31:34:0.500:2	./.	./.	0/1:43,28:31:71:0.394:2	0/1:46,42:31:88:0.477:2	./.	0/1:60,28:32:88:0.318:2	0/1:80,44:32:124:0.355:2	./.	0/1:47,55:32:102:0.539:2
chr2	71058226	rs2080390	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,54:32:111:0.486:2	./.	./.	./.	./.	./.	./.	./.
chr2	71058230	rs57302492	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,68:30:128:0.531:2	./.	./.	./.
chr2	71058306	rs13383830	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,44:28:119:0.370:2	./.	./.	./.
chr2	71058835	rs741326	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,39:28:79:0.494:2	0/1:16,23:29:39:0.590:2	0/1:0,7:30:7:1.00:2	0/1:60,43:29:103:0.417:2	0/1:73,50:30:123:0.407:2	0/1:53,56:30:109:0.514:2	0/1:0,125:30:125:1.00:2	0/1:64,35:29:99:0.354:2	0/1:60,52:30:112:0.464:2	0/1:0,70:28:70:1.00:2	0/1:57,39:28:96:0.406:2
chr2	71058906	rs3213749	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,26:29:58:0.448:2	./.	./.	./.
chr2	71060037	rs6712863	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,41:30:85:0.482:2	./.	./.	./.
chr2	71060111	rs17006436	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:29:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	71060936	rs17718987	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:114,77:33:191:0.403:2	0/1:62,30:32:92:0.326:2	./.	./.	0/1:109,60:32:169:0.355:2	0/1:114,77:32:191:0.403:2	./.	0/1:112,87:32:199:0.437:2	0/1:103,89:34:192:0.464:2	./.	0/1:120,75:33:195:0.385:2
chr2	71061001	rs72836219	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,56:30:111:0.505:2	./.	./.	./.
chr2	71061051	rs41285965	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,51:31:121:0.421:2	./.	./.	./.
chr2	71061108	rs17662453	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,54:31:100:0.540:2	./.	./.	./.	./.	./.	./.	./.
chr2	71062648	rs10489990	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:41,33:30:74:0.446:2	0/1:19,21:32:40:0.525:2	./.	./.	0/1:0,124:31:124:1.00:2	0/1:62,38:30:100:0.380:2	./.	0/1:57,72:31:129:0.558:2	0/1:53,60:31:113:0.531:2	0/1:0,104:30:104:1.00:2	0/1:51,63:30:114:0.553:2
chr2	71160222	rs2234500	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,25:28:66:0.379:2	./.	./.	0/1:40,21:26:61:0.344:2
chr2	71160291	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:34:113:0.035:2	./.	./.	./.
chr2	71163086	rs11681642	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,24:30:24:1.00:2	0/1:2,126:30:128:0.984:2	./.	./.	./.	0/1:77,43:30:120:0.358:2	./.	./.	0/1:64,37:30:102:0.366:2
chr2	71163111	rs17853498	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,55:30:161:0.342:2	./.	./.	0/1:72,49:28:121:0.405:2
chr2	71163173	rs17720303	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:74,64:31:138:0.464:2	0/1:29,58:30:87:0.667:2	./.	./.	0/1:3,169:30:172:0.983:2	./.	0/1:1,186:30:187:0.995:2	./.	0/1:94,89:31:183:0.486:2	./.	./.
chr2	71170807	rs2266918	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,9:30:15:0.600:2	./.	0/1:14,13:32:27:0.481:2	./.	./.	0/1:8,10:30:18:0.556:2
chr2	71187104	rs114234874	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,45:31:107:0.425:2
chr2	71190384	rs2072462	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:32:5:0.600:2	0/1:28,41:31:69:0.594:2	0/1:35,46:31:82:0.568:2	0/1:28,50:31:78:0.641:2	./.	0/1:46,41:31:87:0.471:2	0/1:39,31:31:70:0.443:2	0/1:0,45:31:45:1.00:2	./.
chr2	71190398	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:26:46:0.087:2	./.
chr2	71211809	rs61750014	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,32:30:85:0.376:2	./.	./.	./.	./.	./.	./.	./.
chr2	71211815	rs3796098	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,37:30:90:0.411:2	0/1:3,79:31:82:0.963:2	./.	0/1:49,32:32:81:0.395:2	./.	0/1:39,36:30:75:0.480:2
chr2	71211989	rs3796099	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,48:30:49:0.980:2	0/1:0,31:29:31:1.00:2	0/1:5,6:30:11:0.545:2	0/1:0,58:30:58:1.00:2	0/1:61,41:30:102:0.402:2	0/1:0,81:30:81:1.00:2	0/1:2,88:30:90:0.978:2	0/1:0,81:29:81:1.00:2	0/1:0,60:32:60:1.00:2	./.	0/1:0,60:29:60:1.00:2
chr2	71212129	rs3796100	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,3:30:11:0.273:2	0/1:1,4:31:5:0.800:2	./.	0/1:9,7:33:16:0.438:2	./.	./.
chr2	71212130	rs61732224	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,7:31:10:0.700:2	./.	./.	./.	./.	./.
chr2	71212405	rs61732279	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,7:28:42:0.167:2	0/1:0,26:27:26:1.00:2	./.	0/1:22,9:30:31:0.290:2	./.	0/1:36,19:28:55:0.345:2
chr2	71221822	rs2302561	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	./.	0/1:0,28:28:28:1.00:2	0/1:2,38:27:40:0.950:2	./.	0/1:32,8:28:40:0.200:2	./.	0/1:8,7:29:15:0.467:2
chr2	71297695	rs2287328	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,22:27:65:0.338:2	./.
chr2	71304738	rs1043701	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,45:30:96:0.469:2	./.	./.	./.	./.	0/1:42,42:31:84:0.500:2
chr2	71305456	rs6713	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,9:31:20:0.450:2	0/1:0,151:31:152:1.00:2	0/1:1,96:31:97:0.990:2	0/1:92,72:31:164:0.439:2	0/1:97,48:31:145:0.331:2	0/1:1,152:31:153:0.993:2	0/1:98,88:32:186:0.473:2	0/1:0,122:31:122:1.00:2	0/1:0,188:31:188:1.00:2
chr2	71351403	rs6748672	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:31,36:33:67:0.537:2	0/1:25,21:32:46:0.457:2	0/1:0,5:32:5:1.00:2	./.	./.	0/1:60,55:32:115:0.478:2	0/1:55,56:32:111:0.505:2	./.	0/1:54,47:33:101:0.465:2	./.	./.
chr2	71351487	rs11541017	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,27:31:57:0.474:2	./.	0/1:29,33:31:62:0.532:2	0/1:25,16:29:41:0.390:2	0/1:0,101:31:101:1.00:2	0/1:30,40:32:70:0.571:2	0/1:27,35:30:62:0.565:2	0/1:0,70:31:70:1.00:2
chr2	71360144	rs10199088	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,57:32:86:0.663:2	0/1:23,33:32:56:0.589:2	./.	./.	./.	./.	0/1:25,53:33:78:0.679:2	./.
chr2	71360282	rs13010513	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:55,41:32:96:0.427:2	0/1:24,35:32:59:0.593:2	0/1:0,7:31:7:1.00:2	./.	./.	0/1:49,46:31:95:0.484:2	0/1:25,35:32:60:0.583:2	./.	0/1:74,81:33:155:0.523:2	./.	./.
chr2	71360625	rs1813160	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,78:32:180:0.433:2	0/1:73,52:31:125:0.416:2	./.	./.	./.	./.	0/1:117,77:32:194:0.397:2	./.
chr2	71360658	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,46:32:155:0.297:2
chr2	71365676	rs357756	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,22:31:45:0.489:2	0/1:19,14:31:33:0.424:2	./.	./.	./.	./.	0/1:24,14:31:38:0.368:2	./.
chr2	71376471	rs115361918	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,40:32:73:0.548:2	./.	./.	./.	./.	./.	./.
chr2	71376497	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:30:97:0.041:2	./.	./.	./.	./.
chr2	71376999	rs6574	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:161,4:32:165:0.024:2	./.	0/1:123,74:31:197:0.376:2	0/1:121,77:30:198:0.389:2	./.	./.	./.	./.	0/1:131,58:31:189:0.307:2	./.
chr2	71417065	rs357777	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,14:29:36:0.389:2	0/1:13,16:32:29:0.552:2	0/1:0,7:32:7:1.00:2	0/1:0,81:31:81:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,75:30:75:1.00:2	0/1:0,57:31:57:1.00:2	0/1:1,68:31:69:0.986:2	0/1:0,57:33:57:1.00:2	0/1:1,69:32:70:0.986:2	0/1:34,29:33:63:0.460:2
chr2	71429687	rs13001756	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,79:33:147:0.537:2	./.	0/1:73,42:30:115:0.365:2	./.	./.	./.	./.	./.
chr2	71590290	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:33:108:0.037:2	./.	./.
chr2	71631105	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,5:27:91:0.055:2	./.	./.	./.
chr2	71631109	rs3732235	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:32:11:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	71633275	rs3732233	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,53:33:108:0.491:2	0/1:45,37:32:82:0.451:2	0/1:16,7:31:23:0.304:2	0/1:1,134:32:135:0.993:2	0/1:1,91:32:92:0.989:2	0/1:3,80:32:83:0.964:2	0/1:0,90:33:90:1.00:2	0/1:2,96:33:98:0.980:2	0/1:0,119:34:119:1.00:2	0/1:61,41:32:102:0.402:2	0/1:80,47:33:127:0.370:2
chr2	71633389	rs6714975	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,40:31:88:0.455:2	0/1:28,35:31:63:0.556:2	0/1:5,12:30:17:0.706:2	0/1:2,73:30:75:0.973:2	0/1:0,53:29:53:1.00:2	0/1:1,59:30:60:0.983:2	0/1:0,60:31:61:1.00:2	0/1:0,69:31:69:1.00:2	0/1:2,66:31:68:0.971:2	0/1:45,24:30:69:0.348:2	0/1:60,39:30:99:0.394:2
chr2	71654175	rs1804020	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:27,22:31:49:0.449:2	0/1:15,13:32:28:0.464:2	0/1:0,4:31:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:54,43:31:97:0.443:2
chr2	71658541	rs11542286	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:31:12:0.583:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	71738987	rs34603128	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,23:32:42:0.548:2	0/1:5,14:33:19:0.737:2	./.	./.	./.	0/1:21,22:32:43:0.512:2	0/1:24,52:32:76:0.684:2	./.	0/1:34,30:33:64:0.469:2	0/1:0,47:32:47:1.00:2	./.
chr2	71740958	rs35392229	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,22:31:51:0.431:2	0/1:8,12:33:20:0.600:2	./.	./.	./.	0/1:22,27:32:49:0.551:2	./.	./.	./.	0/1:18,19:32:37:0.514:2	./.
chr2	71743376	rs11903960	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,80:29:192:0.421:2	0/1:77,92:29:169:0.544:2	./.	./.	./.	0/1:94,100:30:194:0.515:2	./.	0/1:112,86:29:198:0.434:2	./.	0/1:99,95:29:194:0.490:2	./.
chr2	71747923	rs36122356	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:32:14:0.429:2	./.	./.	./.	./.	./.	./.	./.	0/1:55,48:31:103:0.466:2
chr2	71762232	rs4852801	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,36:32:76:0.474:2	0/1:15,26:32:41:0.634:2	0/1:0,14:31:14:1.00:2	0/1:0,116:31:116:1.00:2	0/1:0,102:31:103:1.00:2	0/1:63,59:31:122:0.484:2	0/1:62,52:31:114:0.456:2	0/1:3,122:31:126:0.976:2	0/1:55,45:31:101:0.450:2	./.	./.
chr2	71762441	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:31:146:0.027:2	./.	./.	./.	./.	./.
chr2	71776536	rs76402294	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,23:32:47:0.489:2	0/1:15,9:32:24:0.375:2	./.	./.	./.	0/1:48,26:33:74:0.351:2	./.	./.	./.	0/1:26,24:33:50:0.480:2	./.
chr2	71780215	rs2303596	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:29:102:1.00:2	0/1:0,79:29:79:1.00:2	0/1:12,14:27:26:0.538:2	0/1:1,151:28:152:0.993:2	0/1:87,86:28:173:0.497:2	0/1:78,84:29:162:0.519:2	0/1:1,170:29:171:0.994:2	0/1:2,181:29:183:0.989:2	0/1:0,154:29:154:1.00:2	0/1:0,128:29:128:1.00:2	0/1:3,136:28:139:0.978:2
chr2	71791292	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,12:17:116:0.103:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	71795152	rs2288355	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,183:33:184:0.995:2	0/1:0,121:32:121:1.00:2	0/1:20,20:32:40:0.500:2	0/1:105,84:33:190:0.444:2	0/1:96,94:32:190:0.495:2	0/1:1,186:32:187:0.995:2	0/1:2,184:33:187:0.989:2	0/1:0,183:33:183:1.00:2	0/1:1,195:33:196:0.995:2	0/1:0,189:33:189:1.00:2	0/1:0,181:33:181:1.00:2
chr2	71795460	rs34836829	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,33:32:66:0.500:2	./.	./.	./.
chr2	71796998	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,6:32:32:0.188:2	./.	./.	./.	./.	./.
chr2	71825707	rs79899601	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,15:31:39:0.385:2	0/1:20,9:32:29:0.310:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	71838597	rs2303606	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,8:31:8:1.00:2	0/1:0,7:32:7:1.00:2	./.	0/1:19,10:29:29:0.345:2	0/1:0,30:29:30:1.00:2	0/1:18,5:30:23:0.217:2	0/1:17,9:29:26:0.346:2	0/1:20,13:30:33:0.394:2	0/1:16,21:31:37:0.568:2	0/1:13,14:30:27:0.519:2	0/1:0,12:29:12:1.00:2
chr2	71886100	rs62145939	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,36:31:90:0.400:2	./.	./.	0/1:74,62:30:136:0.456:2	0/1:48,68:30:116:0.586:2	./.	./.	./.
chr2	71906278	rs17718530	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,64:29:65:0.985:2	./.	./.	./.	./.	./.	./.
chr2	72359518	rs12478279	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,23:31:55:0.418:2	./.	./.	./.	./.	./.	./.	./.
chr2	72361960	rs2241057	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:54,50:29:104:0.481:2	0/1:41,29:29:70:0.414:2	./.	0/1:98,87:30:185:0.470:2	./.	./.	0/1:107,73:29:180:0.406:2	./.	./.	./.	./.
chr2	72707874	rs653220	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,46:32:48:0.958:2	0/1:0,28:32:28:1.00:2	./.	0/1:24,38:33:62:0.613:2	0/1:27,14:31:41:0.341:2	0/1:0,64:31:64:1.00:2	./.	0/1:34,38:33:72:0.528:2	./.	0/1:17,18:33:35:0.514:2	0/1:32,31:33:63:0.492:2
chr2	72958333	rs61736520	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,137:33:141:0.993:2	0/1:2,98:32:100:0.980:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,72:33:190:0.379:2
chr2	72968477	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.	./.	./.	./.	./.
chr2	73144119	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,5:28:186:0.027:2	./.	./.	./.	./.
chr2	73226090	rs12233055	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,40:32:92:0.435:2	./.	./.	./.	./.	./.
chr2	73339708	rs1864488	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:30:44:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,99:31:100:1.00:2	0/1:0,193:30:193:1.00:2	0/1:58,63:30:121:0.521:2	0/1:0,145:31:145:1.00:2	0/1:0,150:30:150:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,62:30:62:1.00:2
chr2	73429808	rs1864492	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.
chr2	73435601	rs17008862	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,22:29:54:0.407:2	0/1:0,50:30:50:1.00:2	0/1:23,16:29:39:0.410:2	./.
chr2	73452967	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,25:31:62:0.403:2	./.	./.	./.	./.	./.	./.	./.
chr2	73461483	rs1053329	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:19,20:32:39:0.513:2	0/1:6,11:32:17:0.647:2	./.	./.	0/1:12,4:33:16:0.250:2	./.	0/1:17,29:29:46:0.630:2	./.	./.	./.	0/1:10,14:32:24:0.583:2
chr2	73478461	rs7851	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:23,26:32:49:0.531:2	0/1:22,15:31:37:0.405:2	0/1:2,5:31:7:0.714:2	./.	0/1:28,33:31:61:0.541:2	./.	0/1:41,28:33:69:0.406:2	./.	./.	./.	0/1:23,28:32:51:0.549:2
chr2	73478466	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,6:33:64:0.094:2	./.
chr2	73479859	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,19:29:180:0.106:2	./.	./.	./.	./.
chr2	73490412	rs34363861	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:16,18:31:34:0.529:2	0/1:15,10:30:25:0.400:2	0/1:1,7:30:8:0.875:2	./.	0/1:39,26:29:65:0.400:2	./.	0/1:37,19:28:56:0.339:2	0/1:29,25:30:54:0.463:2	0/1:1,36:30:37:0.973:2	0/1:26,16:29:42:0.381:2	0/1:30,18:28:48:0.375:2
chr2	73491473	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,54:30:92:0.587:2	./.	./.	./.	./.
chr2	73492614	rs526106	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.
chr2	73493746	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,4:31:15:0.267:2
chr2	73518867	rs7558708	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,7:30:15:0.467:2	./.
chr2	73651967	rs3813227	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,164:32:165:1.00:2	0/1:0,99:32:99:1.00:2	0/1:24,13:32:37:0.351:2	./.	./.	./.	0/1:83,80:32:163:0.491:2	./.	./.	./.	0/1:104,93:32:197:0.472:2
chr2	73675630	rs199682595	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:33:10:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	73675669	rs2037814	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:1,52:32:53:0.981:2	0/1:0,18:32:18:1.00:2	0/1:0,64:32:64:1.00:2	0/1:40,43:31:83:0.518:2	0/1:0,93:32:93:1.00:2	0/1:2,88:32:90:0.978:2	0/1:0,80:32:80:1.00:2	./.	0/1:0,62:33:62:1.00:2	0/1:43,44:32:87:0.506:2
chr2	73675782	rs367641723	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,15:33:37:0.405:2	./.	./.	./.	./.
chr2	73675844	rs7598901	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,29:31:29:1.00:2	0/1:7,4:32:11:0.364:2	0/1:0,20:31:20:1.00:2	0/1:19,12:32:31:0.387:2	0/1:1,25:32:26:0.962:2	./.	0/1:0,17:32:17:1.00:2	./.
chr2	73676409	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:33:83:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	73677833	rs6546836	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,34:33:34:1.00:2	0/1:0,27:32:27:1.00:2	0/1:2,5:34:7:0.714:2	./.	./.	./.	0/1:16,9:31:25:0.360:2	./.	./.	./.	0/1:25,22:33:48:0.468:2
chr2	73677898	rs6546837	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,58:33:58:1.00:2	0/1:0,30:31:30:1.00:2	./.	./.	./.	./.	0/1:26,18:33:44:0.409:2	./.	./.	./.	0/1:46,20:32:66:0.303:2
chr2	73678951	rs192863498	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	73679280	rs6546838	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,42:32:42:1.00:2	0/1:0,19:33:19:1.00:2	0/1:3,9:33:12:0.750:2	./.	./.	./.	0/1:22,12:32:34:0.353:2	./.	0/1:36,3:34:39:0.077:2	./.	0/1:37,24:30:61:0.393:2
chr2	73679866	rs10496192	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,49:32:49:1.00:2	0/1:1,26:32:27:0.963:2	0/1:5,4:32:9:0.444:2	./.	./.	./.	0/1:27,11:33:38:0.289:2	./.	./.	./.	0/1:37,24:31:61:0.393:2
chr2	73679956	rs28730854	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:29,22:33:51:0.431:2	0/1:16,5:31:21:0.238:2	0/1:3,3:33:6:0.500:2	./.	./.	./.	0/1:11,10:32:21:0.476:2	./.	./.	./.	./.
chr2	73679990	rs6724782	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,35:32:35:1.00:2	0/1:0,20:32:20:1.00:2	./.	./.	./.	./.	0/1:10,8:32:18:0.444:2	./.	./.	./.	0/1:28,24:32:52:0.462:2
chr2	73680508	rs6546839	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:1,34:33:35:0.971:2	0/1:1,32:32:33:0.970:2	0/1:5,3:34:8:0.375:2	./.	./.	./.	0/1:23,8:32:31:0.258:2	./.	./.	./.	0/1:32,23:32:55:0.418:2
chr2	73716810	rs3820700	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,9:32:19:0.474:2	./.	./.	./.	0/1:0,36:32:36:1.00:2	./.	0/1:21,13:30:34:0.382:2
chr2	73717103	rs2017116	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,19:31:29:0.655:2	./.	./.	./.	0/1:1,46:32:47:0.979:2	./.	0/1:27,22:31:49:0.449:2
chr2	73717567	rs2056486	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:2,34:31:36:0.944:2	0/1:0,30:31:30:1.00:2	./.	./.	./.	./.	0/1:6,7:31:13:0.538:2	./.	./.	./.	0/1:20,21:30:41:0.512:2
chr2	73717656	rs10193972	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:5,76:33:81:0.938:2	0/1:1,59:33:60:0.983:2	0/1:3,2:35:5:0.400:2	./.	./.	./.	0/1:30,43:33:73:0.589:2	./.	./.	./.	0/1:75,60:33:135:0.444:2
chr2	73746923	rs11884776	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,36:33:36:1.00:2	0/1:0,18:32:18:1.00:2	./.	./.	./.	./.	0/1:23,6:33:29:0.207:2	./.	./.	./.	0/1:25,34:31:59:0.576:2
chr2	73828538	rs1052161	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,8:31:21:0.381:2	0/1:0,134:32:134:1.00:2	0/1:100,89:31:189:0.471:2	0/1:0,152:31:152:1.00:2	0/1:111,78:32:189:0.413:2	0/1:0,174:32:174:1.00:2	./.	0/1:0,146:31:146:1.00:2	./.
chr2	73829372	rs1052162	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:2,144:32:146:0.986:2	0/1:4,57:32:61:0.934:2	0/1:14,9:33:23:0.391:2	./.	./.	./.	0/1:88,87:32:175:0.497:2	./.	./.	./.	0/1:80,76:32:156:0.487:2
chr2	73868328	rs13538	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:2,55:33:57:0.965:2	0/1:0,37:32:37:1.00:2	./.	./.	./.	./.	0/1:39,27:32:66:0.409:2	./.	./.	./.	0/1:40,49:32:89:0.551:2
chr2	73927931	rs4852974	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,66:33:66:1.00:2	0/1:45,23:33:68:0.338:2	0/1:0,74:32:74:1.00:2	0/1:0,46:32:46:1.00:2	./.	./.	0/1:0,59:32:59:1.00:2	./.
chr2	73928027	rs57478538	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,5:30:15:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	73928098	rs2001490	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,5:32:12:0.417:2	0/1:1,163:32:164:0.994:2	0/1:102,73:32:175:0.417:2	0/1:1,172:32:173:0.994:2	0/1:5,153:33:158:0.968:2	0/1:2,135:32:137:0.985:2	./.	0/1:0,114:32:114:1.00:2	./.
chr2	73928183	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:34:166:0.024:2	./.	./.	./.	./.
chr2	73928366	rs2012574	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,85:30:85:1.00:2	0/1:36,30:28:66:0.455:2	0/1:1,82:29:83:0.988:2	0/1:0,81:30:81:1.00:2	0/1:2,76:30:78:0.974:2	./.	0/1:0,64:29:64:1.00:2	./.
chr2	73957124	rs7210	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,4:29:15:0.267:2	0/1:2,96:30:98:0.980:2	0/1:49,35:30:84:0.417:2	0/1:0,121:29:121:1.00:2	0/1:0,64:30:64:1.00:2	0/1:1,95:30:96:0.990:2	./.	0/1:0,107:31:107:1.00:2	./.
chr2	73989950	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:29:58:0.069:2	./.	./.	./.	./.
chr2	74007136	rs2272051	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,15:34:20:0.750:2	0/1:0,102:32:102:1.00:2	0/1:58,51:32:109:0.468:2	0/1:2,73:32:75:0.973:2	0/1:0,85:32:85:1.00:2	0/1:0,106:32:106:1.00:2	./.	0/1:0,71:33:72:1.00:2	./.
chr2	74043902	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:32:72:0.056:2	./.	./.	./.	./.
chr2	74043914	rs200514281	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,32:31:83:0.386:2	./.	./.
chr2	74135440	rs149716725	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,43:31:101:0.426:2	./.
chr2	74135898	rs756128	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,68:33:68:1.00:2	0/1:30,36:32:66:0.545:2	0/1:0,71:32:71:1.00:2	./.	0/1:0,64:32:64:1.00:2	0/1:42,31:33:73:0.425:2	0/1:0,46:32:46:1.00:2	0/1:38,33:33:71:0.465:2
chr2	74143874	rs151132409	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,26:31:62:0.419:2	./.	./.	./.
chr2	74166105	rs184770596	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:33:18:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	74177777	rs74874677	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,69:29:146:0.473:2	0/1:42,36:29:78:0.462:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	74185876	rs4777	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:0,35:32:35:1.00:2	0/1:2,4:31:6:0.667:2	0/1:30,26:31:56:0.464:2	0/1:24,25:32:49:0.510:2	./.	./.	0/1:40,27:31:67:0.403:2	0/1:35,38:32:73:0.521:2	0/1:3,56:32:59:0.949:2	0/1:35,34:32:69:0.493:2
chr2	74274329	rs61741171	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,21:30:40:0.525:2	./.	0/1:17,13:31:30:0.433:2	0/1:27,28:30:55:0.509:2	./.	./.	0/1:25,22:32:47:0.468:2
chr2	74300717	rs7560668	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,19:32:21:0.905:2	0/1:0,13:33:13:1.00:2	./.	0/1:16,8:33:24:0.333:2	0/1:0,12:32:12:1.00:2	./.	0/1:0,25:32:25:1.00:2	0/1:1,19:32:20:0.950:2	0/1:14,20:35:34:0.588:2	./.	0/1:20,12:33:32:0.375:2
chr2	74327553	rs200937244	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,33:31:94:0.351:2	0/1:24,31:30:55:0.564:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	74328439	rs60481444	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,9:32:16:0.563:2	./.	./.	./.
chr2	74369476	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,4:31:60:0.067:2	./.	./.	./.	./.	./.	./.	./.
chr2	74386261	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,5:25:118:0.042:2
chr2	74448655	rs7587117	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,30:28:67:0.448:2	0/1:17,22:29:39:0.564:2	./.	0/1:28,34:29:62:0.548:2	0/1:26,31:29:57:0.544:2	./.
chr2	74466594	rs4853018	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,44:31:83:0.530:2	./.	0/1:36,41:31:77:0.532:2	./.	./.	0/1:35,30:31:65:0.462:2	0/1:12,39:31:51:0.765:2	./.
chr2	74469102	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,21:27:54:0.389:2	0/1:17,22:27:39:0.564:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	74531724	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,59:29:117:0.509:2
chr2	74593556	rs369113498	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,25:30:54:0.463:2
chr2	74594159	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,5:30:96:0.052:2	./.	./.	./.	./.	./.	./.
chr2	74596527	rs17721059	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,78:30:155:0.503:2	./.	./.	./.	./.
chr2	74598751	rs201078804	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,26:32:44:0.591:2	0/1:15,4:31:19:0.211:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	74641624	rs2240444	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,7:28:133:0.053:2	./.	./.	./.	0/1:46,51:28:97:0.526:2
chr2	74685748	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:30:48:0.083:2	./.	./.	./.	./.
chr2	74687550	rs8469	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,48:32:103:0.466:2
chr2	74687595	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,17:13:103:0.165:2	0/1:75,20:10:95:0.211:2
chr2	74687781	rs61733470	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,4:29:15:0.267:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	74690039	rs2268416	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,12:30:21:0.571:2
chr2	74690378	rs1063588	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:166,5:28:171:0.029:2	./.	./.	./.	./.	./.	0/1:84,64:30:148:0.432:2
chr2	74699778	rs1047911	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,45:30:97:0.464:2
chr2	74702230	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:33:181:0.022:2	./.	./.	./.	./.
chr2	74709270	rs376698702	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,104:31:197:0.528:2	./.	./.	./.	./.	./.
chr2	74710491	rs6707475	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,24:30:57:0.421:2
chr2	74725144	rs6546908	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:32:54:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,10:32:10:1.00:2	0/1:25,34:32:59:0.576:2	0/1:0,43:32:43:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,35:31:35:1.00:2	0/1:35,28:34:63:0.444:2	0/1:0,34:32:34:1.00:2	0/1:0,21:30:21:1.00:2
chr2	74725178	rs17009998	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,14:28:24:0.583:2
chr2	74726598	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:31:45:0.089:2
chr2	74726607	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,6:30:104:0.058:2	./.	./.	./.	./.	./.	./.	./.
chr2	74726637	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:34:38:0.079:2
chr2	74746322	rs6546909	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,31:28:93:0.333:2
chr2	74750250	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,35:33:142:0.246:2
chr2	74756548	rs1183739	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:33:14:0.429:2	./.	./.	./.	./.	0/1:95,96:31:191:0.503:2	./.	./.	./.
chr2	74757756	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:32:140:0.029:2	./.	./.	./.
chr2	74763247	rs77706750	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,26:31:47:0.553:2	./.	./.	./.	./.	0/1:29,17:29:46:0.370:2
chr2	74781938	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.
chr2	74884699	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:33:127:0.032:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	74889937	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:30:63:0.063:2	./.	./.	./.	./.	./.
chr2	74900588	rs34617503	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,50:30:100:0.500:2	0/1:50,42:28:92:0.457:2	./.	./.
chr2	74902461	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:33:62:0.065:2
chr2	75099477	rs2229621	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,15:30:15:1.00:2	0/1:57,68:30:125:0.544:2	./.	0/1:59,74:30:133:0.556:2	./.	./.	./.	./.	0/1:68,69:30:137:0.504:2
chr2	75101454	rs2229622	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,28:28:28:1.00:2	0/1:90,98:29:188:0.521:2	./.	0/1:104,84:29:188:0.447:2	./.	./.	./.	./.	0/1:82,97:28:179:0.542:2
chr2	75105864	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:30:71:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	75109285	rs140362296	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:32:100:0.040:2
chr2	75113657	rs2229626	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:38,41:32:80:0.519:2	0/1:24,16:32:40:0.400:2	./.	0/1:49,48:31:97:0.495:2	./.	./.	0/1:4,97:31:101:0.960:2	0/1:71,39:31:110:0.355:2	0/1:57,45:32:102:0.441:2	0/1:0,69:31:69:1.00:2	./.
chr2	75113788	rs146476722	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,13:33:28:0.464:2	./.	./.
chr2	75113789	rs2229627	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,18:30:28:0.643:2	0/1:1,13:30:14:0.929:2	0/1:0,7:31:7:1.00:2	0/1:0,31:31:31:1.00:2	./.	0/1:17,10:31:27:0.370:2	0/1:0,47:31:47:1.00:2	0/1:18,21:31:39:0.538:2	0/1:15,13:34:28:0.464:2	0/1:0,21:31:21:1.00:2	0/1:15,8:28:23:0.348:2
chr2	75115108	rs10194657	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,58:32:104:0.558:2	0/1:29,38:32:67:0.567:2	0/1:0,18:33:18:1.00:2	0/1:1,168:33:170:0.994:2	0/1:66,67:32:134:0.504:2	0/1:70,77:32:147:0.524:2	0/1:1,156:33:157:0.994:2	0/1:76,73:32:150:0.490:2	0/1:72,65:33:137:0.474:2	0/1:0,135:32:136:1.00:2	0/1:92,73:33:166:0.442:2
chr2	75185856	rs12366	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,25:28:28:0.926:2	0/1:0,18:30:18:1.00:2	./.	0/1:1,24:28:26:0.960:2	0/1:5,14:28:19:0.737:2	./.	0/1:6,3:27:9:0.333:2	0/1:0,18:27:18:1.00:2	0/1:0,24:28:24:1.00:2	0/1:0,14:26:14:1.00:2	./.
chr2	75187281	rs77954588	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,18:31:33:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	75425728	rs6715729	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,37:32:65:0.569:2	0/1:16,23:32:39:0.590:2	0/1:5,5:31:10:0.500:2	0/1:0,107:32:107:1.00:2	0/1:55,45:33:100:0.450:2	0/1:0,94:32:94:1.00:2	0/1:74,53:32:127:0.417:2	0/1:60,49:33:109:0.450:2	0/1:0,136:33:136:1.00:2	0/1:0,81:33:81:1.00:2	0/1:0,109:33:109:1.00:2
chr2	75720372	rs11126472	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,23:30:66:0.348:2	0/1:17,14:31:31:0.452:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	75720664	rs6741778	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,46:31:47:0.979:2	0/1:2,15:32:17:0.882:2	./.	./.	0/1:23,20:32:43:0.465:2	./.	0/1:41,27:31:68:0.397:2	./.	./.	./.	0/1:18,21:31:39:0.538:2
chr2	75744918	rs2286995	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,37:31:39:0.949:2	0/1:0,27:30:27:1.00:2	0/1:0,2:27:2:1.00:2	./.	0/1:30,14:29:45:0.318:2	0/1:35,21:29:56:0.375:2	0/1:60,22:29:82:0.268:2	0/1:28,19:30:47:0.404:2	./.	./.	0/1:0,44:29:44:1.00:2
chr2	75882399	rs17689863	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,29:31:91:0.319:2	./.	0/1:71,31:31:103:0.304:2	./.	./.	./.
chr2	75893101	rs141965995	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:29:47:0.085:2	./.	./.	./.	./.	./.
chr2	75907351	rs6722682	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,18:30:49:0.367:2	./.	./.	0/1:23,16:32:39:0.410:2	./.	./.	./.	./.
chr2	75914985	rs41286003	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,51:32:101:0.505:2
chr2	75915035	rs1803196	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,25:31:53:0.472:2	./.	0/1:40,22:31:62:0.355:2	0/1:34,31:30:65:0.477:2	0/1:33,24:30:57:0.421:2	./.	./.	./.
chr2	75917161	rs41286005	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,82:33:175:0.469:2	./.	./.	./.	./.	0/1:95,68:34:163:0.417:2	./.	./.
chr2	75923413	rs7560262	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,26:33:63:0.413:2	0/1:29,36:32:65:0.554:2	0/1:23,37:31:60:0.617:2	0/1:20,21:33:41:0.512:2	0/1:28,20:33:48:0.417:2	./.	./.	./.
chr2	77745816	rs200395825	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,6:31:136:0.044:2	./.
chr2	77748781	rs139031845	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,25:32:51:0.490:2	./.	./.	./.	./.	./.	./.
chr2	79253872	rs149297151	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,53:33:103:0.515:2	./.	./.
chr2	79253911	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:32:118:0.034:2	./.	./.	./.	./.
chr2	79253947	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.	./.	./.
chr2	79253948	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.	./.	./.
chr2	79254261	rs452267	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,128:32:128:1.00:2	0/1:1,72:32:73:0.986:2	0/1:0,35:32:35:1.00:2	0/1:0,159:32:159:1.00:2	0/1:95,78:32:173:0.451:2	0/1:79,70:32:149:0.470:2	0/1:87,101:33:188:0.537:2	0/1:0,182:33:182:1.00:2	0/1:0,153:33:153:1.00:2	0/1:0,175:32:175:1.00:2	0/1:0,168:33:168:1.00:2
chr2	79255325	rs2290079	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:32:6:1.00:2	0/1:30,26:32:56:0.464:2	./.	0/1:36,14:32:50:0.280:2	./.	0/1:0,43:33:43:1.00:2	0/1:3,25:33:28:0.893:2	0/1:15,17:32:32:0.531:2	0/1:43,25:33:68:0.368:2
chr2	79312414	rs3739144	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,110:32:110:1.00:2	0/1:0,53:32:53:1.00:2	0/1:14,5:31:19:0.263:2	0/1:70,47:32:117:0.402:2	0/1:49,26:31:75:0.347:2	0/1:51,47:31:98:0.480:2	0/1:2,73:31:75:0.973:2	0/1:76,42:32:118:0.356:2	./.	./.	0/1:0,124:32:124:1.00:2
chr2	79313990	rs62640882	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,42:31:92:0.457:2	./.	./.	./.	./.	./.	./.
chr2	79349131	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:106,4:30:110:0.036:2	./.	./.	./.	./.	./.	./.
chr2	79350256	rs283892	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,12:30:29:0.414:2	./.	./.	./.	./.	./.	0/1:39,46:32:85:0.541:2
chr2	79350347	rs12228	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,36:32:36:1.00:2	0/1:0,14:33:14:1.00:2	./.	0/1:0,46:30:46:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,32:33:32:1.00:2
chr2	79385786	rs76653007	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:91,18:32:110:0.165:2	0/1:55,11:32:66:0.167:2	./.	0/1:158,13:31:171:0.076:2	0/1:139,10:33:149:0.067:2	./.	0/1:159,8:33:167:0.048:2	./.	./.	0/1:135,7:31:142:0.049:2	0/1:115,7:33:122:0.057:2
chr2	79385787	rs77686105	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:89,20:28:109:0.183:2	0/1:55,11:32:66:0.167:2	./.	0/1:156,13:30:169:0.077:2	0/1:140,10:31:150:0.067:2	./.	0/1:159,8:31:167:0.048:2	./.	./.	0/1:135,7:30:142:0.049:2	0/1:117,7:32:124:0.056:2
chr2	79385823	rs201139260	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,5:26:98:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	80101321	rs61291641	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,21:30:43:0.488:2	0/1:14,14:30:28:0.500:2	./.	./.	./.	0/1:0,49:30:49:1.00:2	./.	0/1:22,45:29:67:0.672:2	./.	./.	./.
chr2	80529956	rs6733871	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:56,51:32:107:0.477:2	0/1:37,45:32:82:0.549:2	0/1:13,14:33:27:0.519:2	./.	./.	./.	./.	0/1:99,97:32:196:0.495:2	./.	./.	0/1:85,46:32:131:0.351:2
chr2	80530062	rs76300062	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,59:28:140:0.421:2	0/1:42,55:29:97:0.567:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	80530819	rs186584392	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,7:30:13:0.538:2	0/1:2,5:31:7:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	80801346	rs2228460	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,18:32:34:0.545:2	0/1:95,90:32:185:0.486:2	./.	0/1:96,91:32:187:0.487:2	0/1:95,97:33:192:0.505:2	0/1:97,85:32:182:0.467:2	0/1:101,86:32:187:0.460:2	0/1:1,156:32:157:0.994:2	0/1:93,94:32:187:0.503:2
chr2	81421230	rs13030022	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,15:26:16:0.938:2	0/1:6,6:23:12:0.500:2	0/1:0,13:27:13:1.00:2	0/1:11,4:30:15:0.267:2	0/1:0,14:27:14:1.00:2	0/1:0,13:27:13:1.00:2	0/1:8,13:28:21:0.619:2	0/1:5,14:27:19:0.737:2
chr2	84756049	rs4832089	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:31:48:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,57:31:57:1.00:2	0/1:1,60:31:61:0.984:2	0/1:55,22:31:77:0.286:2	./.	0/1:0,70:31:70:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,64:30:64:1.00:2
chr2	84771480	rs1037863	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,92:32:93:0.989:2	0/1:0,52:31:52:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,50:30:50:1.00:2	0/1:47,47:30:94:0.500:2	./.	0/1:0,79:31:79:1.00:2	0/1:0,107:32:107:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,105:32:105:1.00:2
chr2	84771567	rs1542477	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:31:52:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,17:30:17:1.00:2	0/1:28,16:31:44:0.364:2	./.	0/1:0,42:31:42:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,55:32:55:1.00:2
chr2	84775411	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:32:195:0.021:2
chr2	84800605	rs11891970	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:33:59:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,12:32:12:1.00:2	0/1:1,89:33:90:0.989:2	0/1:0,30:32:30:1.00:2	0/1:56,40:32:96:0.417:2	./.	0/1:0,68:32:68:1.00:2	0/1:0,83:33:83:1.00:2	0/1:0,69:33:69:1.00:2	0/1:0,77:33:77:1.00:2
chr2	84831573	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:31:41:0.098:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	84846930	rs61743118	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,28:29:52:0.538:2	0/1:20,8:28:28:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	84848596	rs61733547	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,57:31:120:0.475:2	./.	./.	./.	./.	./.
chr2	84861723	rs7570005	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,29:32:83:0.349:2	0/1:2,68:32:70:0.971:2	./.	./.	./.	./.
chr2	84867647	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:31:123:0.033:2	./.	./.	./.	./.
chr2	84880445	rs28375417	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,14:32:30:0.467:2	0/1:4,19:31:23:0.826:2	./.	./.	./.	./.
chr2	84880837	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:32:133:0.030:2	./.	./.
chr2	84896628	rs17708884	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,57:31:57:1.00:2	0/1:31,22:30:53:0.415:2	0/1:27,33:32:60:0.550:2	./.	./.	./.	0/1:0,40:33:40:1.00:2	./.
chr2	84897517	rs1881095	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,123:33:123:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,8:34:8:1.00:2	0/1:3,122:33:125:0.976:2	0/1:0,73:32:73:1.00:2	0/1:74,70:32:144:0.486:2	./.	0/1:0,130:33:130:1.00:2	0/1:0,130:33:130:1.00:2	0/1:0,123:33:123:1.00:2	0/1:0,138:33:138:1.00:2
chr2	84921433	rs1192295	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,54:30:123:0.439:2	0/1:5,159:30:164:0.970:2	./.	./.	./.	./.
chr2	84924823	rs78190897	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:34:9:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	84926797	rs369172853	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,39:32:77:0.506:2
chr2	84928399	rs200844717	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,40:30:95:0.421:2	./.
chr2	84932836	rs1192269	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,37:30:110:0.336:2	0/1:3,94:32:97:0.969:2	./.	./.	./.	./.
chr2	84945469	rs1192344	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,31:32:64:0.484:2	0/1:1,44:32:45:0.978:2	./.	./.	./.	./.
chr2	84960594	rs72832550	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,70:29:150:0.467:2	0/1:43,41:29:84:0.488:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	85097590	rs1863772	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,36:30:71:0.507:2	0/1:0,78:31:78:1.00:2	./.	./.	./.	./.
chr2	85276746	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:31:57:0.070:2	./.	./.	./.
chr2	85536415	rs11547160	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,23:30:41:0.561:2	./.	./.	./.	./.	./.	./.	./.
chr2	85549868	rs4240199	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,15:33:41:0.366:2	0/1:16,15:32:31:0.484:2	0/1:0,4:32:4:1.00:2	0/1:1,40:33:41:0.976:2	0/1:25,27:33:52:0.519:2	0/1:1,42:33:43:0.977:2	./.	0/1:42,30:32:72:0.417:2	0/1:12,23:34:35:0.657:2	0/1:27,20:32:48:0.426:2	0/1:23,29:33:52:0.558:2
chr2	85549874	rs3637	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:22,14:32:36:0.389:2	0/1:18,14:31:32:0.438:2	0/1:1,3:33:4:0.750:2	./.	0/1:27,26:32:53:0.491:2	0/1:0,45:32:45:1.00:2	./.	0/1:39,27:32:66:0.409:2	0/1:12,24:33:36:0.667:2	./.	0/1:26,26:33:52:0.500:2
chr2	85553784	rs1044973	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,53:31:115:0.461:2	0/1:50,40:32:90:0.444:2	0/1:0,23:30:23:1.00:2	0/1:94,86:30:180:0.478:2	0/1:82,62:30:144:0.431:2	0/1:0,172:30:172:1.00:2	0/1:184,9:31:193:0.047:2	0/1:113,76:31:189:0.402:2	0/1:99,90:32:189:0.476:2	0/1:60,85:30:145:0.586:2	0/1:79,94:30:173:0.543:2
chr2	85554080	rs4247303	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:56,39:33:95:0.411:2	0/1:27,22:32:49:0.449:2	./.	./.	0/1:31,15:32:46:0.326:2	0/1:0,82:32:82:1.00:2	./.	0/1:39,38:33:78:0.494:2	0/1:58,35:32:93:0.376:2	0/1:46,41:33:87:0.471:2	0/1:52,44:33:96:0.458:2
chr2	85555038	rs34725713	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:124,23:9:147:0.156:2	./.	0/1:125,23:9:148:0.155:2	./.	./.	./.	0/1:116,35:9:152:0.232:2	./.
chr2	85570403	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:32:177:0.023:2	./.
chr2	85570442	rs143283662	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,4:31:22:0.182:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	85570780	rs13384912	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,5:31:183:0.027:2	./.	./.	./.
chr2	85570797	rs201163400	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,5:32:158:0.032:2	./.	0/1:149,8:33:157:0.051:2	./.	./.	./.
chr2	85570849	rs4832168	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:105,10:32:115:0.087:2	0/1:67,11:33:78:0.141:2	./.	0/1:138,31:32:169:0.183:2	0/1:137,41:31:178:0.230:2	0/1:144,30:32:174:0.172:2	./.	0/1:135,22:32:158:0.140:2	0/1:136,21:33:157:0.134:2	./.	0/1:114,19:31:133:0.143:2
chr2	85570857	rs4832169	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:106,12:30:118:0.102:2	0/1:66,11:31:77:0.143:2	./.	0/1:147,36:30:184:0.197:2	0/1:144,45:30:189:0.238:2	0/1:148,37:30:187:0.200:2	./.	0/1:157,25:31:183:0.137:2	0/1:139,24:32:163:0.147:2	./.	0/1:118,20:31:139:0.145:2
chr2	85571228	rs200882656	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,23:21:81:0.284:2	0/1:57,15:19:72:0.208:2	0/1:63,16:21:79:0.203:2	./.	0/1:78,14:22:92:0.152:2	0/1:71,17:14:88:0.193:2	0/1:34,12:17:47:0.261:2	0/1:60,18:16:78:0.231:2
chr2	85571458	rs140300131	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,66:30:122:0.541:2	./.	./.	./.	./.	./.
chr2	85577310	rs139043592	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:32:12:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	85590286	rs7564372	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,17:31:46:0.370:2	./.	./.	./.	./.	./.	./.	./.
chr2	85595818	rs955592	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,36:30:93:0.387:2	./.	0/1:52,27:31:79:0.342:2	./.	./.	./.
chr2	85617327	rs17850708	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,94:31:192:0.490:2	./.	./.	./.	./.	./.	./.	./.
chr2	85617579	rs17851663	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,38:32:92:0.413:2	./.	./.	./.	./.	./.	./.	./.
chr2	85617913	rs17850709	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,51:32:89:0.573:2	./.	./.	./.	./.	./.	./.	./.
chr2	85617950	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:33:109:0.037:2	./.
chr2	85617951	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:133,4:30:137:0.029:2	./.	./.	./.	./.	./.	./.
chr2	85622059	rs6886	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:79,49:28:128:0.383:2	0/1:30,24:29:54:0.444:2	0/1:7,7:29:14:0.500:2	0/1:80,89:29:169:0.527:2	0/1:78,64:29:142:0.451:2	0/1:75,52:29:127:0.409:2	0/1:4,152:29:156:0.974:2	0/1:2,151:29:153:0.987:2	0/1:91,73:30:164:0.445:2	0/1:0,149:29:150:1.00:2	0/1:77,59:28:136:0.434:2
chr2	85622066	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:30:117:0.034:2	./.	./.	./.	./.	./.
chr2	85625222	rs6885	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:30,21:32:51:0.412:2	0/1:103,72:33:175:0.411:2	./.	0/1:97,76:32:173:0.439:2	0/1:105,82:33:188:0.439:2	0/1:99,92:33:191:0.482:2	./.	0/1:108,64:33:172:0.372:2	./.
chr2	85628745	rs2229669	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,47:31:105:0.448:2	./.	./.	./.	./.	./.	./.	./.
chr2	85628983	rs2229668	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,44:31:121:0.364:2	./.	0/1:46,39:29:85:0.459:2	./.	0/1:62,53:30:115:0.461:2	./.	./.	./.
chr2	85629027	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,6:17:35:0.171:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	85629266	rs62623452	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,61:30:158:0.386:2	./.	./.	./.	./.	./.	./.
chr2	85769711	rs1078004	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,129:33:129:1.00:2	0/1:0,96:32:96:1.00:2	0/1:11,7:32:18:0.389:2	0/1:110,84:32:194:0.433:2	0/1:110,81:32:193:0.424:2	./.	0/1:121,78:33:199:0.392:2	0/1:0,187:32:188:1.00:2	0/1:0,198:34:198:1.00:2	./.	./.
chr2	85769744	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:28:53:0.075:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	85770106	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:34:138:0.029:2
chr2	85779006	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,72:32:150:0.480:2	./.	./.	./.	./.	./.	./.	./.
chr2	85780107	rs10179904	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:78,64:32:142:0.451:2	0/1:52,37:31:89:0.416:2	./.	0/1:97,95:32:193:0.495:2	./.	./.	./.	./.	./.	./.	./.
chr2	85780131	rs2592551	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,78:31:181:0.431:2	./.	0/1:99,70:32:170:0.414:2	0/1:107,69:31:176:0.392:2	0/1:0,145:32:146:1.00:2	./.	./.
chr2	85780536	rs699664	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:27,33:32:60:0.550:2	0/1:24,23:31:47:0.489:2	0/1:11,5:30:16:0.313:2	./.	0/1:38,26:32:64:0.406:2	./.	0/1:34,36:31:70:0.514:2	0/1:42,40:31:82:0.488:2	0/1:2,69:32:71:0.972:2	./.	./.
chr2	85780570	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,4:30:88:0.045:2	./.	./.	./.	./.	./.	./.	./.
chr2	85781318	rs1254896	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,98:32:98:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,138:32:138:1.00:2	0/1:76,70:32:147:0.479:2	0/1:0,140:32:140:1.00:2	0/1:3,148:32:151:0.980:2	0/1:0,137:33:137:1.00:2	0/1:0,132:33:132:1.00:2	0/1:0,136:32:136:1.00:2	0/1:0,128:32:128:1.00:2
chr2	85785595	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,86:33:179:0.480:2	./.	./.
chr2	85786074	rs6751560	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,71:31:140:0.507:2	./.	./.	./.
chr2	85806266	rs3731828	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,6:26:22:0.273:2	./.	0/1:4,7:30:11:0.636:2	0/1:17,11:30:29:0.393:2	0/1:1,34:31:35:0.971:2	./.	./.
chr2	85808737	rs1009	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:87,101:32:188:0.537:2	0/1:91,60:32:151:0.397:2	./.	0/1:111,86:33:197:0.437:2	0/1:106,89:33:196:0.456:2	./.	0/1:117,80:32:197:0.406:2	0/1:2,195:32:197:0.990:2	0/1:2,190:33:192:0.990:2	./.	./.
chr2	85818886	rs14976	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,81:31:170:0.476:2	0/1:112,82:31:194:0.423:2	./.	./.	./.	0/1:89,97:32:186:0.522:2	./.	./.
chr2	85824039	rs1127974	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,72:29:156:0.462:2	./.	./.	./.	0/1:99,79:30:178:0.444:2	./.	./.
chr2	85826721	rs11891495	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,92:32:175:0.526:2	./.	./.	./.	0/1:88,97:33:185:0.524:2	./.	./.
chr2	85843348	rs11544042	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:31:18:0.500:2	0/1:4,3:31:7:0.429:2	./.	./.	./.	0/1:14,19:31:33:0.576:2	./.	./.	./.	./.	./.
chr2	85843431	rs114838872	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:32:7:0.571:2	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	./.	./.
chr2	85893741	rs1130866	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,12:31:46:0.261:2	0/1:15,6:32:21:0.286:2	0/1:2,5:32:7:0.714:2	0/1:32,33:31:65:0.508:2	0/1:60,51:31:111:0.459:2	0/1:36,26:31:62:0.419:2	0/1:54,33:31:87:0.379:2	./.	0/1:0,55:31:55:1.00:2	./.	0/1:31,27:31:58:0.466:2
chr2	85894308	rs3024798	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,44:31:89:0.494:2	0/1:45,44:31:89:0.494:2	0/1:62,59:31:121:0.488:2	0/1:56,44:32:100:0.440:2	0/1:0,109:31:109:1.00:2	0/1:0,106:32:106:1.00:2	0/1:2,66:31:68:0.971:2	./.
chr2	85924729	rs11127	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,3:31:13:0.231:2	0/1:2,97:31:100:0.980:2	0/1:44,27:31:71:0.380:2	0/1:58,39:30:97:0.402:2	0/1:47,49:31:96:0.510:2	./.	0/1:0,90:31:90:1.00:2	./.	./.
chr2	85925667	rs4240201	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,24:30:26:0.923:2	0/1:25,21:30:46:0.457:2	0/1:17,25:31:42:0.595:2	0/1:24,24:30:48:0.500:2	./.	0/1:0,35:32:35:1.00:2	./.	./.
chr2	85925680	rs4240202	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,5:33:7:0.714:2	0/1:1,30:30:31:0.968:2	0/1:25,22:28:47:0.468:2	0/1:18,28:30:46:0.609:2	0/1:24,27:29:51:0.529:2	./.	0/1:1,48:31:49:0.980:2	./.	./.
chr2	86079987	rs116727133	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,9:30:24:0.375:2	./.	./.	./.	./.
chr2	86088311	rs1138484	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:53,37:30:90:0.411:2	0/1:25,8:29:33:0.242:2	./.	0/1:51,34:31:85:0.400:2	./.	0/1:60,38:30:98:0.388:2	./.	./.	0/1:81,57:31:138:0.413:2	0/1:47,41:31:88:0.466:2	./.
chr2	86094686	rs62147538	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:13,6:31:19:0.316:2	0/1:17,16:32:33:0.485:2	./.	0/1:16,18:31:34:0.529:2	./.	0/1:27,14:30:41:0.341:2	./.	./.	0/1:19,23:32:42:0.548:2	0/1:28,20:32:49:0.417:2	./.
chr2	86094687	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,28:32:61:0.459:2
chr2	86259443	rs2276626	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,83:30:85:0.976:2	0/1:0,51:31:51:1.00:2	0/1:3,6:32:9:0.667:2	0/1:64,63:30:127:0.496:2	./.	0/1:0,128:29:128:1.00:2	0/1:104,74:30:178:0.416:2	0/1:103,74:29:177:0.418:2	0/1:67,47:29:114:0.412:2	0/1:66,47:30:113:0.416:2	0/1:46,41:28:87:0.471:2
chr2	86269163	rs34892520	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,78:32:168:0.464:2	./.	./.	./.
chr2	86272758	rs1561328	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,11:30:28:0.393:2	./.	./.	./.	./.	./.	./.	./.	0/1:100,87:30:187:0.465:2
chr2	86280058	rs35625755	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,99:31:172:0.576:2	./.	./.	./.	0/1:78,91:33:169:0.538:2	./.	./.
chr2	86305404	rs35239368	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:32:13:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	86315741	rs2288120	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:32:86:1.00:2	0/1:0,50:31:50:1.00:2	0/1:11,4:30:15:0.267:2	0/1:0,134:31:134:1.00:2	0/1:2,175:31:177:0.989:2	0/1:0,147:30:147:1.00:2	0/1:5,181:31:186:0.973:2	0/1:117,77:32:194:0.397:2	0/1:0,138:32:138:1.00:2	0/1:40,45:31:85:0.529:2	0/1:86,43:31:129:0.333:2
chr2	86317037	rs4832242	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:32:75:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,11:33:11:1.00:2	0/1:1,75:33:76:0.987:2	0/1:0,40:32:40:1.00:2	0/1:0,62:32:62:1.00:2	0/1:1,56:33:57:0.982:2	0/1:29,37:31:66:0.561:2	0/1:0,108:34:108:1.00:2	0/1:22,39:32:61:0.639:2	0/1:45,46:32:91:0.505:2
chr2	86344237	rs3764948	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,4:30:17:0.235:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	86371883	rs8244	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,34:28:34:1.00:2	0/1:0,23:30:23:1.00:2	./.	0/1:0,32:27:32:1.00:2	./.	0/1:0,43:28:43:1.00:2	0/1:19,33:30:52:0.635:2	./.	0/1:41,30:29:71:0.423:2	0/1:27,26:29:53:0.491:2	./.
chr2	86378589	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,18:31:29:0.621:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	86385728	rs1131071	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,34:31:72:0.472:2	./.	0/1:26,32:32:58:0.552:2	./.	0/1:46,37:31:83:0.446:2	./.	./.
chr2	86385812	rs2228352	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,4:32:12:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	86400824	rs1050301	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:30:16:0.563:2	./.	0/1:0,41:31:41:1.00:2	./.	0/1:18,18:30:36:0.500:2	0/1:38,19:31:57:0.333:2	0/1:33,36:32:69:0.522:2	./.	0/1:57,72:31:130:0.558:2
chr2	86406556	rs17027011	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,18:33:54:0.333:2
chr2	86422073	rs9653569	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,83:32:83:1.00:2	0/1:1,57:31:58:0.983:2	0/1:10,7:33:17:0.412:2	0/1:0,161:32:161:1.00:2	./.	0/1:0,137:33:138:1.00:2	0/1:107,74:32:181:0.409:2	./.	0/1:89,55:33:144:0.382:2	0/1:56,64:32:120:0.533:2	./.
chr2	86433240	rs10901	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:3,186:31:189:0.984:2	0/1:0,93:31:93:1.00:2	./.	0/1:1,194:30:195:0.995:2	./.	0/1:0,196:30:196:1.00:2	0/1:93,80:31:173:0.462:2	./.	0/1:103,91:31:194:0.469:2	0/1:102,92:31:194:0.474:2	./.
chr2	86439583	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:33:114:0.035:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	86440718	rs11944	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	0/1:0,29:30:29:1.00:2	./.	0/1:19,9:33:28:0.321:2	0/1:19,22:28:41:0.537:2	0/1:22,32:31:54:0.593:2	./.	0/1:21,25:30:46:0.543:2
chr2	86481835	rs2276625	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,30:31:30:1.00:2	0/1:0,28:30:28:1.00:2	./.	0/1:12,28:32:40:0.700:2	0/1:21,17:32:38:0.447:2	0/1:16,20:32:36:0.556:2	./.	0/1:40,38:32:78:0.487:2
chr2	86683642	rs2030259	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,53:33:111:0.477:2	0/1:29,35:32:64:0.547:2	0/1:0,16:32:16:1.00:2	0/1:3,114:32:117:0.974:2	0/1:0,78:32:78:1.00:2	./.	0/1:31,37:33:68:0.544:2	0/1:1,122:32:123:0.992:2	0/1:0,163:33:163:1.00:2	0/1:57,65:32:122:0.533:2	0/1:92,95:33:188:0.508:2
chr2	86683960	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:30:114:0.035:2	./.	./.	./.	./.
chr2	86691250	rs12714187	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,52:33:109:0.477:2	0/1:25,25:32:50:0.500:2	0/1:0,13:32:13:1.00:2	0/1:2,108:33:110:0.982:2	0/1:0,75:32:75:1.00:2	./.	0/1:41,59:33:100:0.590:2	0/1:0,105:33:105:1.00:2	0/1:0,139:33:139:1.00:2	0/1:60,67:33:127:0.528:2	0/1:45,50:33:95:0.526:2
chr2	86693766	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:31:99:0.040:2	./.
chr2	86693826	rs34605051	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:50,46:32:96:0.479:2	0/1:40,22:32:62:0.355:2	./.	./.	./.	./.	0/1:59,58:32:117:0.496:2	0/1:84,53:32:137:0.387:2	0/1:78,62:33:140:0.443:2	./.	./.
chr2	86697428	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:32:171:0.023:2	./.	./.	./.
chr2	86707448	rs35269985	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,58:32:140:0.414:2	./.	0/1:98,70:32:168:0.417:2	./.	./.
chr2	86712153	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,7:30:94:0.074:2	./.	./.
chr2	86719151	rs11883727	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,20:33:32:0.625:2	./.
chr2	86737594	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:32:51:0.078:2	./.	./.	./.	./.
chr2	86756381	rs11548929	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:78,62:32:140:0.443:2	0/1:30,27:31:57:0.474:2	./.	./.	./.	./.	0/1:108,80:32:188:0.426:2	0/1:109,83:32:192:0.432:2	0/1:86,96:33:182:0.527:2	./.	./.
chr2	86832099	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,6:31:148:0.041:2
chr2	86979093	rs10186663	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,95:33:97:0.979:2	0/1:0,75:32:75:1.00:2	0/1:8,11:32:19:0.579:2	0/1:84,46:32:130:0.354:2	./.	0/1:80,64:32:144:0.444:2	0/1:0,146:32:146:1.00:2	0/1:0,125:32:125:1.00:2	0/1:93,62:34:155:0.400:2	0/1:52,50:32:102:0.490:2	0/1:0,138:33:138:1.00:2
chr2	87016506	rs3020726	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,46:32:91:0.505:2	0/1:37,25:32:62:0.403:2	./.	./.	./.	./.	0/1:30,30:33:60:0.500:2	./.
chr2	87017575	rs2229240	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,36:30:73:0.493:2	0/1:20,22:30:42:0.524:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	87017662	rs2229239	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,19:32:25:0.760:2	0/1:11,10:32:21:0.476:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	87042825	rs35555413	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,52:32:114:0.456:2	./.	./.	./.	./.	./.	./.	0/1:72,62:31:134:0.463:2
chr2	87069379	rs4322832	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,116:32:194:0.598:2	0/1:74,122:32:196:0.622:2	0/1:50,12:32:62:0.194:2	0/1:82,112:32:194:0.577:2	./.	0/1:162,35:32:197:0.178:2	0/1:156,43:33:199:0.216:2	0/1:166,32:33:198:0.162:2	./.	0/1:150,48:32:198:0.242:2	0/1:89,101:33:191:0.532:2
chr2	87069431	rs4514875	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,118:31:182:0.648:2	0/1:60,127:32:187:0.679:2	0/1:65,15:30:80:0.188:2	0/1:64,124:31:188:0.660:2	./.	0/1:149,49:31:198:0.247:2	0/1:136,39:31:175:0.223:2	0/1:155,41:31:196:0.209:2	./.	0/1:143,50:32:193:0.259:2	0/1:70,125:31:195:0.641:2
chr2	87069463	rs199878581	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:170,23:33:193:0.119:2	0/1:141,11:32:152:0.072:2	0/1:51,10:33:61:0.164:2	0/1:180,17:33:197:0.086:2	0/1:181,18:32:199:0.090:2	./.	0/1:176,22:32:198:0.111:2	./.	./.	./.	./.
chr2	87073852	rs2228022	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,83:31:187:0.444:2	./.	./.	./.	./.	./.	./.	0/1:87,84:31:171:0.491:2
chr2	87085256	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:174,11:31:185:0.059:2	0/1:131,7:33:138:0.051:2	0/1:31,9:32:40:0.225:2	0/1:186,11:32:197:0.056:2	0/1:171,17:32:188:0.090:2	./.	0/1:187,8:32:195:0.041:2	0/1:179,16:31:195:0.082:2	0/1:181,12:33:193:0.062:2	0/1:180,10:30:190:0.053:2	0/1:183,15:32:198:0.076:2
chr2	87085302	rs201066720	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:182,6:30:188:0.032:2	0/1:142,9:28:151:0.060:2	./.	./.	0/1:147,5:30:152:0.033:2	./.	./.	0/1:159,11:30:170:0.065:2	0/1:170,14:29:184:0.076:2	./.	./.
chr2	87198893	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,40:31:196:0.204:2	./.	./.
chr2	87204993	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,16:31:65:0.246:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	87205053	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:188,4:33:192:0.021:2	./.	./.	./.	0/1:189,5:32:195:0.026:2	./.	./.	./.	./.	./.
chr2	87212716	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:39,90:33:129:0.698:2	0/1:39,55:32:94:0.585:2	./.	./.	0/1:93,25:32:118:0.212:2	./.	0/1:66,48:33:114:0.421:2	./.	0/1:98,28:34:126:0.222:2	./.	0/1:83,68:33:151:0.450:2
chr2	87212747	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:32:195:0.021:2	0/1:134,10:30:144:0.069:2	./.	./.	./.	./.	./.	./.	./.	0/1:179,7:32:187:0.038:2	./.
chr2	87212781	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:167,30:32:197:0.152:2	0/1:156,41:32:197:0.208:2	./.	./.	0/1:146,50:31:196:0.255:2	./.	0/1:114,80:31:194:0.412:2	./.	0/1:149,50:33:199:0.251:2	./.	0/1:150,42:32:193:0.219:2
chr2	87212868	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:157,34:32:191:0.178:2	0/1:141,55:31:196:0.281:2	0/1:131,21:32:152:0.138:2	0/1:178,18:31:196:0.092:2	0/1:165,31:31:196:0.158:2	0/1:161,36:33:197:0.183:2	0/1:177,19:33:196:0.097:2	0/1:183,15:33:198:0.076:2	0/1:176,19:34:195:0.097:2	0/1:146,50:32:196:0.255:2	0/1:175,20:33:195:0.103:2
chr2	87212970	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:128,4:30:132:0.030:2	./.	./.	./.	./.	./.	./.
chr2	87213001	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,21:32:155:0.135:2	./.	./.	./.	./.	./.	./.	./.
chr2	87213132	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:29:79:0.051:2	./.	./.	./.	./.	./.
chr2	87213276	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,29:32:44:0.659:2	./.	./.	./.	./.	./.
chr2	87213376	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:21,14:30:35:0.400:2	0/1:3,3:32:6:0.500:2	./.	./.	0/1:21,11:31:32:0.344:2	./.	./.	./.	0/1:20,5:33:25:0.200:2	./.	0/1:16,7:32:23:0.304:2
chr2	87213758	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:36:197:0.025:2	./.	./.	./.
chr2	87213944	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,18:31:166:0.108:2	./.	./.	./.	./.	./.	./.	./.
chr2	87214280	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,3:32:43:0.070:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	87214604	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,4:32:100:0.040:2	./.	./.	./.	./.	./.	./.
chr2	87214666	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,4:32:38:0.105:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	87214878	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:15,6:28:21:0.286:2	0/1:13,4:25:17:0.235:2	./.	./.	./.	./.	0/1:19,4:26:23:0.174:2	./.	./.	./.	./.
chr2	87214900	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:14,4:31:18:0.222:2	./.	./.	./.	./.	./.	0/1:13,4:31:17:0.235:2	./.	./.	0/1:11,3:31:14:0.214:2	./.
chr2	87221975	.	T	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:193,5:32:198:0.025:2	0/1:140,7:33:147:0.048:2	./.	0/1:185,11:33:196:0.056:2	0/1:186,10:31:197:0.051:2	0/1:194,5:32:199:0.025:2	0/1:168,8:33:176:0.045:2	0/1:189,10:33:199:0.050:2	0/1:194,6:33:200:0.030:2	0/1:186,9:32:195:0.046:2	0/1:183,11:33:194:0.057:2
chr2	87221978	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2
chr2	87222021	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,45:34:200:0.225:2	./.	./.	./.
chr2	87222043	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,4:33:196:0.020:2	./.	./.	./.	./.	./.	./.
chr2	87224828	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:160,36:32:196:0.184:2	./.	./.	./.	./.	./.	./.
chr2	87239644	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,42:31:187:0.225:2	0/1:125,37:32:162:0.228:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	87239696	.	C	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:144,33:32:177:0.186:2	0/1:134,55:32:189:0.291:2	./.	./.	0/1:164,29:32:195:0.150:2	./.	0/1:157,32:32:189:0.169:2	./.	0/1:147,39:32:186:0.210:2	./.	0/1:150,44:32:194:0.227:2
chr2	87243501	rs199986885	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:101,96:34:197:0.487:2	0/1:88,106:32:194:0.546:2	./.	./.	0/1:151,47:32:198:0.237:2	./.	0/1:159,40:33:199:0.201:2	./.	0/1:156,39:35:195:0.200:2	./.	0/1:154,41:33:195:0.210:2
chr2	87755041	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,19:32:148:0.128:2	0/1:170,16:30:186:0.086:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	87755101	rs201261668	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,84:32:103:0.816:2	0/1:115,74:32:189:0.392:2	./.	0/1:17,160:32:177:0.904:2	0/1:110,84:32:194:0.433:2	./.	./.	0/1:115,73:33:188:0.388:2	0/1:27,150:32:177:0.847:2
chr2	87755162	rs144282529	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,7:34:192:0.036:2
chr2	87779728	rs78050112	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,40:32:101:0.396:2	./.	0/1:59,24:33:83:0.289:2	./.	./.	./.
chr2	87779747	rs200640242	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,32:29:93:0.344:2	./.	0/1:66,23:28:89:0.258:2	./.	./.	./.
chr2	87779776	rs80292941	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,30:32:81:0.370:2	./.	0/1:56,20:31:76:0.263:2	./.	./.	./.
chr2	87808754	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:184,13:31:197:0.066:2	0/1:176,7:32:183:0.038:2	./.	0/1:191,5:32:196:0.026:2	0/1:172,11:31:183:0.060:2	./.	0/1:185,14:30:199:0.070:2	./.	0/1:187,6:31:193:0.031:2	./.	0/1:185,14:32:199:0.070:2
chr2	88053077	rs199957503	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:121,76:33:197:0.386:2	0/1:114,80:33:194:0.412:2	./.	./.	0/1:162,38:33:200:0.190:2	./.	0/1:157,42:34:199:0.211:2	./.	0/1:161,37:34:198:0.187:2	./.	0/1:161,33:33:194:0.170:2
chr2	88056885	.	G	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:152,35:30:188:0.187:2	0/1:154,40:31:194:0.206:2	./.	./.	0/1:165,33:31:198:0.167:2	./.	0/1:165,25:32:190:0.132:2	./.	0/1:157,32:33:189:0.169:2	./.	0/1:160,34:32:194:0.175:2
chr2	88056937	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,41:32:154:0.266:2	0/1:102,32:32:134:0.239:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	88071741	rs202128504	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:161,35:32:196:0.179:2	./.	./.	./.	./.	./.	./.
chr2	88074523	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr2	88074545	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,43:32:192:0.224:2	./.	./.	./.
chr2	88074588	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,6:27:114:0.053:2	./.	./.	0/1:135,9:30:144:0.063:2	./.	./.	0/1:138,4:32:142:0.028:2
chr2	88074591	.	A	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:128,4:31:132:0.030:2	0/1:107,5:29:112:0.045:2	0/1:126,18:31:144:0.125:2	0/1:110,8:32:118:0.068:2	./.	./.	./.	./.
chr2	88081665	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,4:31:22:0.182:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	88081687	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,3:27:15:0.200:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	88081899	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:32:170:0.024:2	./.	./.	./.	./.	./.
chr2	88082285	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,4:31:48:0.083:2	./.	./.	./.	./.	./.	./.
chr2	88082621	rs199539996	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:147,48:31:195:0.246:2	./.	./.	./.	./.	./.	./.	./.
chr2	88083189	.	T	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:13,12:31:25:0.480:2	0/1:5,8:30:13:0.615:2	./.	./.	0/1:30,6:29:36:0.167:2	./.	0/1:13,6:30:19:0.316:2	./.	0/1:14,8:30:22:0.364:2	./.	0/1:16,6:30:22:0.273:2
chr2	88083289	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,20:32:67:0.299:2	./.	./.	./.	./.	./.
chr2	88083433	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,6:29:110:0.055:2	./.	./.	./.	./.	./.
chr2	88083541	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,5:32:19:0.263:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	88083544	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:30:134:0.030:2	./.	./.	./.	./.	./.
chr2	88083564	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:142,12:32:154:0.078:2	./.	./.	./.	./.	./.	./.	./.
chr2	88083697	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:155,33:32:188:0.176:2	0/1:161,35:33:196:0.179:2	0/1:115,5:29:120:0.042:2	0/1:179,12:32:191:0.063:2	0/1:171,26:31:197:0.132:2	0/1:177,18:31:195:0.092:2	0/1:171,28:32:199:0.141:2	0/1:188,9:33:197:0.046:2	0/1:187,6:33:193:0.031:2	0/1:157,33:31:190:0.174:2	./.
chr2	88083784	rs199618447	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:148,32:33:180:0.178:2	0/1:108,31:32:139:0.223:2	./.	./.	0/1:103,34:32:137:0.248:2	./.	0/1:86,51:31:137:0.372:2	./.	0/1:121,34:32:155:0.219:2	./.	0/1:129,32:32:161:0.199:2
chr2	88083818	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:33:163:0.025:2	0/1:100,4:31:104:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	88083849	rs200044571	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:21,98:33:119:0.824:2	0/1:15,59:32:74:0.797:2	0/1:9,4:33:13:0.308:2	./.	0/1:87,29:31:116:0.250:2	./.	0/1:51,33:33:84:0.393:2	./.	0/1:65,20:33:85:0.235:2	./.	0/1:84,70:33:155:0.455:2
chr2	88091570	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,8:31:60:0.133:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	88094637	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:193,5:28:198:0.025:2	./.	./.	./.	./.	./.	./.
chr2	88094649	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:194,5:29:199:0.025:2	./.	./.	./.	./.	./.	./.
chr2	88097670	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,46:32:200:0.230:2	./.	./.
chr2	88327387	rs12999878	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,31:32:56:0.554:2	./.
chr2	88383970	rs61748137	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,66:33:155:0.429:2	./.	0/1:62,58:33:120:0.483:2
chr2	88387403	rs1542088	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,71:29:124:0.587:2	0/1:40,42:31:82:0.512:2	0/1:0,20:30:20:1.00:2	0/1:63,107:29:171:0.629:2	./.	./.	0/1:0,181:28:182:1.00:2	./.	0/1:82,97:31:179:0.542:2	0/1:60,67:29:127:0.528:2	./.
chr2	88387407	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,22:9:106:0.208:2	./.	0/1:103,19:12:122:0.156:2	./.	./.	./.
chr2	88387557	rs1542087	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,73:29:156:0.468:2	0/1:0,162:28:162:1.00:2	./.	./.	./.	./.	./.	./.
chr2	88396120	rs2919882	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,32:29:94:0.340:2	0/1:35,22:31:57:0.386:2	0/1:11,4:31:15:0.267:2	0/1:69,57:31:126:0.452:2	0/1:1,55:30:56:0.982:2	0/1:88,53:31:141:0.376:2	./.	0/1:81,45:31:126:0.357:2	0/1:55,24:29:80:0.304:2	0/1:67,37:30:105:0.356:2	0/1:65,24:30:89:0.270:2
chr2	88396123	rs2970912	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,32:32:97:0.330:2	0/1:35,21:33:56:0.375:2	0/1:11,4:31:15:0.267:2	0/1:72,57:33:129:0.442:2	0/1:1,55:32:56:0.982:2	0/1:93,53:33:146:0.363:2	./.	0/1:83,45:33:128:0.352:2	0/1:56,24:33:80:0.300:2	0/1:69,38:32:107:0.355:2	0/1:65,24:31:89:0.270:2
chr2	88396174	rs2919881	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,47:29:121:0.388:2	0/1:38,21:29:59:0.356:2	0/1:11,8:30:19:0.421:2	0/1:80,71:29:151:0.470:2	0/1:1,83:29:84:0.988:2	0/1:85,69:29:154:0.448:2	./.	0/1:99,61:29:160:0.381:2	0/1:77,55:30:132:0.417:2	0/1:72,57:29:129:0.442:2	0/1:78,40:29:118:0.339:2
chr2	88407959	rs2970918	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,98:30:98:1.00:2	0/1:0,112:30:112:1.00:2	./.	./.	./.	./.	./.	0/1:41,40:30:81:0.494:2
chr2	88424066	rs2241883	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,4:29:19:0.211:2	0/1:99,57:32:156:0.365:2	./.	./.	0/1:91,68:33:159:0.428:2	0/1:86,69:33:155:0.445:2	0/1:61,67:34:128:0.523:2	./.	./.
chr2	88425751	rs184923111	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,84:31:192:0.438:2	./.	./.	./.	./.	./.	./.
chr2	88472791	rs4129190	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,8:29:19:0.421:2	0/1:4,4:32:8:0.500:2	0/1:0,7:29:7:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,16:32:16:1.00:2	0/1:6,5:31:11:0.455:2	0/1:0,35:32:35:1.00:2	0/1:0,25:33:25:1.00:2	0/1:9,5:31:14:0.357:2	0/1:0,23:32:23:1.00:2
chr2	88474214	rs143431033	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,87:29:195:0.446:2	./.	./.	./.	./.
chr2	88482258	rs35051888	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:29:15:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	88874891	rs1805165	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:32:3:1.00:2	0/1:19,27:33:46:0.587:2	0/1:12,10:31:22:0.455:2	0/1:0,34:32:34:1.00:2	0/1:0,15:32:15:1.00:2	./.	0/1:19,17:33:36:0.472:2	./.	0/1:1,40:33:41:0.976:2
chr2	88879131	rs1805164	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:33:4:1.00:2	0/1:12,18:31:30:0.600:2	./.	0/1:16,27:32:43:0.628:2	./.	0/1:18,20:32:38:0.526:2	./.	./.	./.
chr2	88885555	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:30:126:0.032:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	88895123	rs13045	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:29:9:1.00:2	0/1:71,55:29:126:0.437:2	0/1:46,26:28:72:0.361:2	0/1:0,118:29:118:1.00:2	./.	0/1:67,67:29:134:0.500:2	0/1:84,66:30:151:0.440:2	./.	0/1:0,131:29:131:1.00:2
chr2	88913273	rs867529	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,35:33:35:1.00:2	0/1:2,15:32:17:0.882:2	./.	0/1:20,16:31:36:0.444:2	0/1:23,24:31:47:0.511:2	./.	./.	0/1:0,39:32:39:1.00:2	0/1:25,21:33:46:0.457:2	0/1:2,32:33:34:0.941:2	./.
chr2	89160062	rs78304725	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,10:32:27:0.370:2	./.	./.	./.	./.	./.	./.
chr2	89160071	rs375138838	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,14:32:65:0.215:2
chr2	89160111	rs375348000	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,18:32:52:0.346:2
chr2	89160113	rs188703994	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,8:33:50:0.160:2
chr2	89160125	rs371870153	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,6:32:18:0.333:2	./.	./.	./.	./.
chr2	89160130	rs143789163	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,3:34:34:0.088:2
chr2	89160133	rs371065981	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:33:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89160366	rs374263130	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,19:32:30:0.633:2	./.	./.	./.	./.	./.
chr2	89160377	rs111362472	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,4:33:32:0.125:2
chr2	89160380	rs369482255	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,4:30:35:0.118:2
chr2	89160383	rs370250567	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:26:37:0.111:2
chr2	89160394	rs185021767	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,12:31:40:0.300:2
chr2	89160397	rs141201227	C	T,G	.	PASS	AC=1,1;AF=0.167,0.167;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/2:33:30:0.133:2	./.	./.	./.	0/1:32:40:0.425:2
chr2	89160407	rs145002796	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,5:30:34:0.147:2	./.	./.	./.	./.
chr2	89160420	rs375632806	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,12:30:30:0.400:2	./.
chr2	89160435	rs190727741	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,5:33:26:0.192:2	./.	./.	./.	./.	./.	./.
chr2	89160450	rs192319381	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,4:32:27:0.148:2	./.	./.	./.	./.	./.	./.
chr2	89160457	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,14:32:35:0.400:2
chr2	89160463	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,4:27:34:0.118:2
chr2	89160724	rs137877271	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,14:31:31:0.452:2	./.	./.	./.	./.	./.	./.
chr2	89160727	rs372752310	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:32:43:0.093:2	./.	./.	./.	./.	./.
chr2	89160737	rs374307940	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,8:31:41:0.195:2	./.
chr2	89160740	rs375352031	A	G,T	.	PASS	AC=1,1;AF=0.167,0.167;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:BQ:DP:FA:SS	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/2:32:38:0.105:2	./.	./.	./.	0/1:33:42:0.190:2	./.
chr2	89160747	rs368685523	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,8:34:31:0.258:2	./.	./.	./.	./.
chr2	89160764	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,9:32:41:0.220:2
chr2	89160770	rs369861497	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,9:31:37:0.243:2
chr2	89160791	rs139114112	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.
chr2	89160801	rs114010559	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,11:31:20:0.550:2	./.	./.	./.	./.	./.	./.
chr2	89160802	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,11:30:20:0.550:2	./.	./.	./.	./.	./.	./.
chr2	89161005	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,3:32:46:0.065:2
chr2	89161017	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,14:29:53:0.264:2	./.	./.	./.	./.	./.	./.
chr2	89161030	rs370359529	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,13:30:55:0.236:2	./.	./.	./.	./.	./.	./.
chr2	89161063	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,8:33:55:0.145:2	./.	./.	./.	./.	./.	./.
chr2	89161068	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:33:82:0.049:2	./.	./.	./.	./.
chr2	89161069	rs113458930	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,27:33:54:0.500:2	./.	./.	./.	./.	0/1:46,9:32:55:0.164:2	./.
chr2	89161072	rs113539064	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,27:33:52:0.519:2	./.	./.	./.	./.	0/1:48,9:33:57:0.158:2	./.
chr2	89161090	rs368862045	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:34:8:0.625:2	./.	./.	./.	./.	./.	./.	./.
chr2	89161368	rs190332567	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,3:33:27:0.111:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89185464	rs139176691	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,7:32:25:0.280:2
chr2	89185466	rs186837913	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,7:29:26:0.269:2
chr2	89185519	rs182045278	G	A,C	.	PASS	AC=2,1;AF=0.222,0.111;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31:14:0.714:2	0/2:32:39:0.692:2	./.	./.	./.	./.	0/1:31:12:0.250:2
chr2	89185556	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,5:32:12:0.417:2	./.	./.	./.	./.	./.	./.
chr2	89185620	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,10:27:21:0.476:2	./.	./.	./.	./.
chr2	89185651	rs375238504	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,4:33:17:0.235:2
chr2	89185652	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,4:34:18:0.222:2
chr2	89185664	rs192141151	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,15:30:26:0.577:2	./.	./.	./.	./.
chr2	89196811	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,20:31:30:0.667:2
chr2	89196839	rs372412682	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,17:31:26:0.654:2
chr2	89197105	rs189117859	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,9:32:27:0.333:2	./.	./.	./.	./.
chr2	89197115	rs368827351	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,5:33:16:0.313:2
chr2	89197190	rs55661410	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,27:31:27:1.00:2	./.	./.	./.	./.
chr2	89246861	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,3:32:41:0.073:2	./.	./.	./.	./.	./.	./.
chr2	89246942	rs201861379	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,2:36:6:0.333:2	./.	./.	./.
chr2	89246951	rs10865492	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,29:30:29:1.00:2	./.	./.	./.	./.
chr2	89247011	rs377378234	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,8:30:27:0.308:2	./.	./.	./.	./.	./.	./.
chr2	89247012	rs146302149	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,8:29:28:0.286:2	./.	./.	./.	./.	./.	./.
chr2	89247013	rs374936658	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,8:26:28:0.286:2	./.	./.	./.	./.	./.	./.
chr2	89247065	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,5:33:12:0.417:2	./.	./.	./.	./.	./.	./.
chr2	89265862	rs200322104	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:27:9:0.333:2	0/1:45,4:32:49:0.082:2	./.	./.	./.	./.	./.	./.
chr2	89265904	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:32:8:0.375:2	./.	./.	./.	./.	./.	./.	./.
chr2	89266057	rs112636307	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,23:31:37:0.622:2	./.	./.	./.
chr2	89278080	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,6:29:50:0.120:2	./.	0/1:122,17:29:139:0.122:2	0/1:9,3:29:12:0.250:2	./.	./.	0/1:94,5:26:100:0.051:2	0/1:109,5:28:114:0.044:2
chr2	89278103	rs144594870	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,6:32:7:0.857:2	0/1:9,7:29:16:0.438:2	./.	./.	./.
chr2	89278489	rs6712880	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,30:30:30:1.00:2	0/1:12,9:30:21:0.429:2	./.	./.	./.
chr2	89291932	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,3:33:23:0.143:2	./.	./.	./.
chr2	89291975	rs374743419	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,3:33:27:0.111:2	./.	./.	./.
chr2	89291984	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,3:32:36:0.083:2	./.	./.	./.	./.
chr2	89291985	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:31:73:0.055:2
chr2	89292121	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:32:107:0.037:2	./.	./.	./.	./.	./.
chr2	89292182	rs59175543	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,31:32:31:1.00:2	0/1:13,6:32:19:0.316:2	./.	./.	./.
chr2	89292201	rs35262290	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,30:30:30:1.00:2	./.	./.	./.	./.
chr2	89292401	rs143871003	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:33,3:33:36:0.083:2	./.	./.	./.	./.	0/1:0,12:33:12:1.00:2	0/1:4,4:34:8:0.500:2	./.	./.	./.
chr2	89309542	rs150068501	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,19:32:19:1.00:2	0/1:9,12:34:21:0.571:2	./.	./.	./.
chr2	89309554	rs147109427	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,16:31:16:1.00:2	0/1:8,10:32:18:0.556:2	./.	./.	./.
chr2	89309631	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,6:32:55:0.109:2	./.	./.	./.	./.	./.
chr2	89309689	rs181502935	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,44:31:58:0.759:2	./.	./.	0/1:2,13:33:15:0.867:2	./.	./.
chr2	89309735	rs80322626	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,30:33:30:1.00:2	0/1:0,4:34:4:1.00:2	./.	./.	./.
chr2	89309762	rs77800356	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,22:31:22:1.00:2	0/1:0,4:28:4:1.00:2	./.	./.	./.
chr2	89326674	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:156,5:32:161:0.031:2	./.	./.	./.	./.	./.	./.
chr2	89326719	rs371030967	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,6:32:53:0.113:2	./.	./.	./.
chr2	89326722	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:32:54:0.074:2	./.	./.	./.
chr2	89326732	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:104,16:31:120:0.133:2	./.	./.	./.	./.	./.	./.
chr2	89326756	rs368012941	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,17:29:100:0.170:2	./.	./.	./.	./.	./.	./.
chr2	89326774	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,5:33:119:0.042:2
chr2	89326794	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:32:75:0.053:2	0/1:56,3:33:59:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89326795	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,5:33:102:0.049:2
chr2	89326842	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:40,12:32:52:0.231:2	0/1:42,8:33:50:0.160:2	./.	./.	./.	./.	./.	0/1:66,14:31:81:0.175:2	0/1:20,20:31:40:0.500:2	0/1:40,3:35:43:0.070:2	./.
chr2	89326871	rs61748348	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,5:31:71:0.070:2	./.	./.	./.	./.	./.	./.
chr2	89326880	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:33:50:0.080:2	./.	./.	./.	./.
chr2	89326890	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,23:31:79:0.291:2	./.	./.	./.	./.	./.	./.
chr2	89326902	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:31:127:0.031:2	0/1:98,4:31:102:0.039:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89326938	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,5:29:174:0.029:2	./.	./.	./.
chr2	89326943	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,5:31:23:0.217:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89326944	rs368509306	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,5:30:24:0.208:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89326952	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,8:30:153:0.052:2	0/1:120,5:32:125:0.040:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89326953	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,12:32:153:0.078:2	0/1:117,8:32:125:0.064:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89327109	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,35:32:93:0.376:2
chr2	89339720	rs201623217	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,70:31:198:0.357:2	./.	./.	./.
chr2	89340118	rs202241783	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,5:32:174:0.029:2	./.	./.	./.
chr2	89340185	rs199853958	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,11:30:139:0.079:2	./.	./.	./.
chr2	89340208	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,6:30:113:0.053:2	./.	./.	./.
chr2	89340213	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:30:139:0.029:2	./.	./.	./.	./.	./.
chr2	89340218	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:127,4:32:131:0.031:2	./.	0/1:130,4:30:134:0.030:2	./.	./.	./.	./.	./.
chr2	89384676	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,67:32:187:0.358:2	./.	./.
chr2	89384748	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:29:98:0.041:2	./.	./.	./.	./.
chr2	89384785	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:33:86:0.047:2	./.	./.	./.	./.
chr2	89384835	rs201655736	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,10:31:117:0.085:2	./.	./.	./.	./.	./.
chr2	89384944	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,62:33:193:0.323:2	./.	./.
chr2	89399530	rs2848409	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:30:78:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89399559	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,4:32:93:0.043:2	./.	./.	./.	./.	./.	./.
chr2	89399568	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,5:33:104:0.048:2	0/1:50,4:31:54:0.074:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89399607	rs376332623	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,13:31:134:0.097:2	0/1:56,8:29:64:0.125:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89399635	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.	./.	./.	./.
chr2	89399645	rs373703006	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,15:30:153:0.100:2	0/1:59,10:31:69:0.145:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89399816	rs181683159	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,3:35:55:0.055:2	./.	./.
chr2	89416990	rs111436329	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:16,9:31:25:0.360:2	0/1:8,7:30:15:0.467:2	./.	./.	./.	./.	0/1:5,6:30:11:0.545:2	./.	./.	./.	./.
chr2	89417087	rs181054320	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:28:29:0.138:2	0/1:11,3:30:14:0.214:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89417090	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:32:29:0.138:2	0/1:11,3:31:14:0.214:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89417091	rs369036924	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,4:32:30:0.133:2	0/1:11,3:31:14:0.214:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89417121	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:49,8:33:57:0.140:2	0/1:17,5:32:22:0.227:2	./.	./.	./.	./.	./.	0/1:53,4:31:57:0.070:2	./.	./.	./.
chr2	89417126	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,6:28:61:0.098:2	0/1:19,4:31:23:0.174:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89417234	rs2848370	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:59,7:34:66:0.106:2	0/1:32,6:31:38:0.158:2	./.	0/1:89,6:31:95:0.063:2	0/1:30,12:31:42:0.286:2	0/1:61,8:32:69:0.116:2	./.	0/1:24,3:31:27:0.111:2	./.	./.	0/1:84,8:30:92:0.087:2
chr2	89442163	rs375984857	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:152,10:33:162:0.062:2	0/1:104,6:31:110:0.055:2	./.	0/1:143,5:31:148:0.034:2	0/1:137,16:32:153:0.105:2	0/1:133,8:32:141:0.057:2	./.	0/1:125,4:32:130:0.031:2	0/1:116,4:33:120:0.033:2	./.	0/1:144,6:32:150:0.040:2
chr2	89442171	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:31:149:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:32:145:0.028:2
chr2	89442184	rs377039999	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:105,8:32:116:0.071:2	0/1:81,8:32:90:0.090:2	./.	0/1:131,6:30:137:0.044:2	0/1:120,13:30:136:0.098:2	0/1:96,6:31:105:0.059:2	./.	0/1:106,4:32:112:0.036:2	./.	./.	0/1:136,6:32:143:0.042:2
chr2	89442193	rs1134775	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:29:105:0.038:2	./.	./.	./.	./.	./.
chr2	89442219	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,5:33:59:0.085:2	./.	./.	./.	./.	./.	0/1:92,4:32:96:0.042:2	./.	./.	./.
chr2	89442284	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,6:27:112:0.054:2	./.	./.	./.	./.	./.
chr2	89442289	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,9:29:113:0.080:2	./.	./.	./.	./.	./.
chr2	89459267	rs395483	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,6:33:190:0.032:2	./.	./.	./.
chr2	89459357	rs200695449	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:45,27:31:73:0.375:2	0/1:21,11:32:32:0.344:2	./.	./.	./.	./.	0/1:10,11:29:21:0.524:2	./.	./.	./.	./.
chr2	89475825	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,31:32:168:0.185:2	./.	./.	./.	./.	./.
chr2	89475831	rs149900655	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:21,42:29:63:0.667:2	0/1:14,18:29:32:0.563:2	./.	./.	./.	./.	./.	./.	./.	0/1:74,22:29:96:0.229:2	./.
chr2	89475917	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,51:30:171:0.298:2	./.	./.	./.	./.	./.
chr2	89475935	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,56:30:186:0.301:2	./.	./.	./.	./.	./.
chr2	89475941	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,55:32:190:0.289:2	./.	./.	./.	./.	./.
chr2	89475991	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:33:40:0.100:2	./.	0/1:167,4:32:171:0.023:2	./.
chr2	89475996	rs199530299	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,6:33:42:0.143:2	./.	0/1:172,4:32:176:0.023:2	./.
chr2	89476021	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,6:31:39:0.154:2	./.	0/1:183,4:32:187:0.021:2	./.
chr2	89476024	rs368646335	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,60:33:190:0.316:2	./.	./.	./.	./.	./.
chr2	89476102	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,25:32:109:0.229:2	./.	./.	./.	./.	./.
chr2	89476549	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,48:30:188:0.255:2	./.	./.	./.	./.	./.
chr2	89512959	rs144881289	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,30:31:187:0.160:2	./.	./.	./.
chr2	89513004	rs141893646	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,60:30:81:0.741:2	0/1:19,35:30:54:0.648:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89513098	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,8:34:75:0.107:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89513365	rs181706250	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,32:31:49:0.653:2	0/1:12,47:29:59:0.797:2	./.	0/1:44,28:30:72:0.389:2	0/1:56,25:32:81:0.309:2
chr2	89521318	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,23:31:189:0.122:2	0/1:116,26:32:142:0.183:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89521389	rs200048221	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,49:32:187:0.262:2	0/1:104,27:32:131:0.206:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89521391	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,27:32:192:0.141:2	0/1:102,26:32:128:0.203:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89544366	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2
chr2	89544473	rs147079411	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,60:32:197:0.305:2	0/1:129,65:32:194:0.335:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89567771	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,7:33:190:0.037:2	./.	./.	./.	./.
chr2	89567801	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,7:33:195:0.036:2
chr2	89567902	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,15:30:190:0.079:2	./.	./.	./.	./.
chr2	89568176	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,5:27:197:0.025:2	./.	./.	./.	./.	./.	./.
chr2	89597477	rs201801834	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,9:32:53:0.170:2	./.	./.	0/1:14,26:32:40:0.650:2	./.	./.
chr2	89619434	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,5:32:104:0.048:2	./.
chr2	89619586	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:33:87:0.046:2	./.	./.
chr2	89619593	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:32:95:0.042:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89619639	rs200381091	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,21:31:67:0.313:2	./.	./.	./.
chr2	89619676	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,7:31:72:0.097:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89619806	rs114472229	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,7:33:43:0.163:2	./.	./.	./.
chr2	89619816	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,3:34:63:0.049:2	0/1:42,3:32:45:0.067:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89629967	rs116531600	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,22:31:100:0.220:2	./.	./.	./.
chr2	89630002	rs116005199	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,18:33:85:0.212:2	0/1:29,21:33:50:0.420:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89630053	rs200873614	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,31:31:140:0.221:2	./.	./.	./.
chr2	89630056	rs201568279	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,31:31:141:0.220:2	./.	./.	./.
chr2	89630157	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,6:30:48:0.125:2	./.	./.	0/1:48,4:29:53:0.077:2	./.	./.
chr2	89630161	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,7:31:51:0.137:2	./.	./.	0/1:47,4:31:51:0.078:2	./.	./.
chr2	89630174	rs115094665	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,5:27:24:0.208:2	./.	./.	./.
chr2	89630177	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,6:33:44:0.136:2	./.	./.	0/1:36,4:32:40:0.100:2	./.	./.
chr2	89952955	rs79547881	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,104:33:187:0.556:2	0/1:94,95:32:189:0.503:2	0/1:71,11:32:82:0.134:2	0/1:132,64:32:196:0.327:2	./.	./.	./.	0/1:137,59:33:196:0.301:2	./.	./.	./.
chr2	89953211	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,13:29:186:0.070:2	./.	./.	./.	./.
chr2	89953263	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2	./.	./.	./.	./.
chr2	89953342	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,7:33:180:0.039:2	./.	./.	./.	./.
chr2	89976280	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,22:30:181:0.122:2	0/1:155,38:31:193:0.197:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89986921	rs424406	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:135,56:31:191:0.293:2	0/1:78,31:32:109:0.284:2	./.	./.	0/1:189,5:31:194:0.026:2	./.	0/1:1,2:32:3:0.667:2	0/1:131,58:30:189:0.307:2	./.	./.	0/1:179,6:32:185:0.032:2
chr2	89999346	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,38:32:186:0.204:2	0/1:128,30:32:158:0.190:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89999348	rs200259649	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,44:33:185:0.238:2	0/1:126,32:32:158:0.203:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	89999419	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,33:31:178:0.185:2	0/1:124,32:31:156:0.205:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	90025275	rs147187346	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:136,56:33:192:0.292:2	0/1:113,58:33:171:0.339:2	./.	./.	./.	./.	./.	0/1:122,69:32:191:0.361:2	./.	./.	./.
chr2	90043702	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,19:31:190:0.100:2	./.	./.	./.	./.	./.
chr2	90044305	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,6:33:183:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	90060873	rs202041075	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:32:175:0.023:2	./.	./.	./.
chr2	90060963	rs150509294	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:170,20:30:190:0.105:2	0/1:146,10:31:156:0.064:2	./.	./.	./.	./.	0/1:3,30:30:33:0.909:2	./.	./.	./.	./.
chr2	90078093	rs2555982	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:152,4:33:156:0.026:2	./.	./.	0/1:3,3:32:6:0.500:2	./.	./.	./.	./.
chr2	90121635	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.
chr2	90121645	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.
chr2	90121675	rs7371197	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:30:70:1.00:2	0/1:0,40:29:40:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,65:30:65:1.00:2	0/1:1,68:30:69:0.986:2	0/1:0,64:29:64:1.00:2	./.	0/1:0,35:28:35:1.00:2	0/1:0,79:30:79:1.00:2	0/1:0,45:29:45:1.00:2	0/1:2,57:30:59:0.966:2
chr2	90121732	rs368378296	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:103,10:32:114:0.088:2	0/1:61,7:33:68:0.103:2	./.	./.	./.	./.	0/1:1,6:33:7:0.857:2	./.	./.	./.	./.
chr2	90121845	rs2693227	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:158,19:32:178:0.107:2	0/1:109,38:31:147:0.259:2	./.	./.	./.	./.	0/1:0,37:32:37:1.00:2	0/1:192,5:32:197:0.025:2	./.	./.	./.
chr2	90121849	rs1852250	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:159,21:33:181:0.117:2	0/1:110,41:32:151:0.272:2	./.	./.	./.	./.	0/1:0,35:32:35:1.00:2	0/1:192,5:32:197:0.025:2	./.	./.	./.
chr2	90121926	rs1852249	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:157,32:31:189:0.169:2	0/1:126,58:31:184:0.315:2	./.	./.	./.	./.	0/1:1,65:30:66:0.985:2	0/1:177,7:32:184:0.038:2	./.	./.	./.
chr2	90121985	rs2693226	A	T,G	.	PASS	AC=1,2;AF=0.111,0.222;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/2:29:192:0.172:2	0/2:31:147:0.211:2	./.	./.	./.	./.	./.	./.	./.	0/1:33:167:0.024:2	./.
chr2	90139116	rs201820003	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:127,49:32:177:0.278:2	0/1:76,30:32:106:0.283:2	0/1:18,11:32:29:0.379:2	0/1:80,65:33:145:0.448:2	0/1:123,22:32:145:0.152:2	0/1:123,42:31:165:0.255:2	0/1:1,75:32:76:0.987:2	0/1:107,43:33:150:0.287:2	0/1:111,54:34:165:0.327:2	0/1:117,44:33:161:0.273:2	0/1:83,53:32:136:0.390:2
chr2	90139156	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,5:32:126:0.040:2	./.	./.	./.
chr2	90139287	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,8:28:158:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	90139325	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,6:31:176:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	90139373	rs6760987	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,90:32:186:0.484:2	./.	./.	./.
chr2	90153987	rs202180477	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,54:33:168:0.321:2	./.	./.
chr2	90154027	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,10:32:60:0.167:2	./.	./.	./.	./.
chr2	90154042	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,6:31:47:0.128:2	./.	./.	./.	./.
chr2	90154043	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,6:32:48:0.125:2	./.	./.	./.	./.
chr2	90154096	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:154,5:29:159:0.031:2	./.	./.	./.	./.	0/1:157,5:33:162:0.031:2	./.	./.	./.	./.	./.
chr2	90154131	rs146414056	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,102:30:182:0.564:2	./.	./.	./.
chr2	90154183	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,3:32:29:0.103:2	./.	./.	./.	./.
chr2	90154211	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:188,5:33:193:0.026:2	./.	./.	./.	./.	0/1:70,3:37:73:0.041:2	./.	./.	./.	./.
chr2	90154255	rs201742575	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,67:31:192:0.349:2	./.	./.
chr2	90193214	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,3:36:90:0.033:2	./.	./.	./.	./.
chr2	90193231	rs200574863	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:33:188:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	90193328	rs200673348	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:32:176:0.023:2	./.	./.
chr2	90193351	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:174,5:31:179:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr2	90193370	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:33:187:0.022:2	./.	./.
chr2	90193376	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:32:184:0.022:2	./.	./.
chr2	90193394	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,4:33:189:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr2	90193410	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,3:35:46:0.065:2	./.	./.	./.	./.
chr2	90193417	rs1724244	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:33:45:0.089:2	0/1:154,34:33:188:0.181:2	./.	./.	./.
chr2	90198703	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,10:30:137:0.073:2	./.	./.	./.
chr2	90198726	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,15:29:187:0.080:2	./.	./.	./.
chr2	90198793	rs199857711	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:33:176:0.023:2	./.	./.	./.
chr2	90199094	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:189,5:32:194:0.026:2	./.	./.	./.	./.	./.	./.
chr2	90199191	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,18:31:195:0.092:2	./.	./.	./.
chr2	90211965	rs371745690	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	0/1:178,5:32:184:0.027:2	./.
chr2	90211969	rs183949314	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,88:32:179:0.494:2	0/1:75,59:31:134:0.440:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	90211977	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:30:127:0.032:2	./.	./.	./.	./.	./.	./.	0/1:185,5:31:190:0.026:2	./.	./.
chr2	90211978	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,5:31:190:0.026:2	./.	./.
chr2	90212050	rs58164053	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:67,40:32:107:0.374:2	0/1:43,38:32:81:0.469:2	./.	0/1:141,4:33:145:0.028:2	./.	./.	./.	0/1:61,36:32:97:0.371:2	0/1:60,41:32:101:0.406:2	./.	./.
chr2	90229260	rs842173	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,43:32:81:0.531:2	./.	./.	./.
chr2	90249122	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.
chr2	90249185	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:32:182:0.022:2
chr2	90249290	rs199882416	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,9:32:138:0.065:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	90249292	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:33:80:0.050:2	./.	./.
chr2	90249299	rs111542961	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,9:29:141:0.064:2	0/1:54,5:32:59:0.085:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	90260191	rs842157	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,22:32:80:0.275:2	./.	./.	./.
chr2	90274073	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,4:30:98:0.041:2	./.	./.	./.	./.	./.	./.
chr2	90274142	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,9:30:21:0.429:2	0/1:122,38:31:160:0.238:2	./.	0/1:65,69:30:134:0.515:2	0/1:28,18:29:46:0.391:2	./.	./.	0/1:74,62:30:136:0.456:2	0/1:137,36:30:173:0.208:2
chr2	90274160	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:188,5:32:194:0.026:2	./.	./.	./.	./.	0/1:169,4:32:174:0.023:2	./.
chr2	90274185	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,5:30:187:0.027:2	./.
chr2	90274188	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:188,4:33:193:0.021:2	./.	./.	./.	./.	./.	./.
chr2	95537572	rs4854235	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:33:7:0.571:2	./.	./.
chr2	95540701	rs62146943	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,3:32:37:0.081:2	./.	./.	./.	./.	./.
chr2	95540717	rs62146944	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:32:38:0.079:2	./.	./.	./.	./.	./.
chr2	95540728	rs62147442	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,3:31:39:0.077:2	./.	./.	./.	./.	./.
chr2	95542388	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,4:29:28:0.143:2	./.
chr2	95542419	rs75603622	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:30:71:0.056:2	./.	./.	./.	./.
chr2	95542476	rs1052809	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:17,3:31:20:0.150:2	./.	./.	./.	./.	./.	0/1:47,5:30:52:0.096:2	./.	./.	0/1:13,4:30:17:0.235:2	./.
chr2	95691596	rs145146615	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,77:30:155:0.497:2	./.	./.
chr2	95766599	rs115258802	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:17,15:30:32:0.469:2	0/1:10,5:32:15:0.333:2	./.	0/1:20,21:31:41:0.512:2	./.	./.	./.	./.	./.	./.	./.
chr2	95773969	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:31:100:0.040:2	./.	./.	./.	./.
chr2	95773987	rs202186869	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,69:31:149:0.463:2	./.	./.	./.	./.	./.	./.
chr2	95775761	rs113259652	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:110,69:30:179:0.385:2	./.	./.	./.	0/1:87,96:32:183:0.525:2	./.	./.
chr2	95815878	rs151077080	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,17:32:37:0.459:2	./.	./.	./.
chr2	95947085	rs12992066	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,29:31:29:1.00:2	0/1:0,14:30:14:1.00:2	./.	0/1:1,38:31:39:0.974:2	0/1:1,60:30:61:0.984:2	0/1:0,69:31:69:1.00:2	0/1:34,24:31:58:0.414:2	0/1:32,38:30:70:0.543:2	0/1:1,59:32:60:0.983:2	0/1:0,62:30:62:1.00:2	0/1:17,18:30:35:0.514:2
chr2	95947099	rs72819488	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	0/1:18,23:33:41:0.561:2	0/1:35,26:32:61:0.426:2	./.	./.	0/1:20,16:32:36:0.444:2
chr2	95947672	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,82:29:185:0.443:2	./.	./.	./.	./.	./.
chr2	95963242	rs2248415	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,11:27:11:1.00:2	0/1:10,4:23:14:0.286:2	0/1:9,5:32:14:0.357:2	0/1:0,4:25:4:1.00:2	0/1:0,5:31:5:1.00:2	./.
chr2	96071341	rs150496534	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:31:145:0.028:2	./.	./.	./.	./.	./.
chr2	96078225	rs1045346	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:172,5:30:177:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr2	96078235	rs1045349	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:176,5:31:181:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr2	96261992	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:34:157:0.025:2	./.	./.	./.	./.
chr2	96262117	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,5:28:192:0.026:2	./.	./.	./.	./.
chr2	96263059	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:156,44:32:200:0.220:2	./.	./.	./.	./.	./.	./.
chr2	96263114	rs200056770	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,15:31:82:0.183:2	./.	./.	./.	0/1:157,39:32:196:0.199:2	0/1:154,36:32:190:0.189:2	./.	./.	./.
chr2	96264846	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:33:199:0.020:2	./.	./.	./.	./.
chr2	96265165	rs200456827	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:76,66:31:142:0.465:2	0/1:92,73:31:165:0.442:2	0/1:31,4:30:35:0.114:2	0/1:93,59:29:152:0.388:2	0/1:101,63:29:164:0.384:2	0/1:84,60:30:144:0.417:2	0/1:86,65:30:151:0.430:2	0/1:92,65:30:157:0.414:2	0/1:92,58:31:150:0.387:2	0/1:90,77:31:167:0.461:2	0/1:121,68:31:189:0.360:2
chr2	96688929	rs201647131	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:98,40:32:138:0.290:2	0/1:70,48:32:118:0.407:2	0/1:11,8:28:19:0.421:2	0/1:113,80:32:193:0.415:2	0/1:98,85:32:183:0.464:2	0/1:105,84:32:189:0.444:2	0/1:90,97:31:187:0.519:2	0/1:120,72:33:192:0.375:2	0/1:113,69:33:183:0.379:2	0/1:119,28:32:147:0.190:2	0/1:88,55:32:143:0.385:2
chr2	96689061	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:31:160:0.025:2	./.	./.	./.	./.	./.
chr2	96692489	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,7:31:49:0.143:2	0/1:29,7:33:36:0.194:2	./.
chr2	96692549	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,4:33:31:0.129:2	0/1:29,5:33:34:0.147:2	./.	./.	./.	./.	./.
chr2	96697004	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,7:32:182:0.038:2	./.	./.
chr2	96697056	rs199841109	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,16:32:93:0.172:2	./.	./.	./.	0/1:162,38:33:200:0.190:2	0/1:146,48:33:194:0.247:2	./.	./.	./.
chr2	96697835	rs148782477	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,7:32:91:0.077:2	./.
chr2	96698036	rs142391216	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:27:5:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	96698126	rs200882167	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	0/1:86,8:25:94:0.085:2	./.	0/1:95,41:26:137:0.301:2	0/1:0,36:26:36:1.00:2	./.	./.	0/1:88,31:25:120:0.261:2
chr2	96780716	rs2229169	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:31:49:1.00:2	0/1:0,31:29:31:1.00:2	0/1:7,3:30:10:0.300:2	0/1:0,56:30:56:1.00:2	0/1:42,36:29:78:0.462:2	0/1:0,74:29:74:1.00:2	0/1:44,35:31:79:0.443:2	0/1:32,34:28:66:0.515:2	0/1:1,38:31:39:0.974:2	0/1:0,62:31:62:1.00:2	./.
chr2	96781257	rs9333568	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,64:28:122:0.525:2	./.	./.	0/1:67,61:29:128:0.477:2	./.	./.
chr2	96781853	rs9333567	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,46:27:115:0.400:2	0/1:51,36:27:87:0.414:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	96789718	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,26:31:46:0.565:2	./.	./.	./.	./.
chr2	96789787	rs893173	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:25,14:30:39:0.359:2	0/1:15,7:32:22:0.318:2	./.	./.	0/1:19,26:32:45:0.578:2	./.	0/1:25,29:32:54:0.537:2	0/1:31,14:31:45:0.311:2	./.	./.	0/1:1,39:31:40:0.975:2
chr2	96789973	rs183967306	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,29:30:63:0.460:2	./.	./.	./.	./.	./.	0/1:16,20:32:36:0.556:2	./.
chr2	96795608	rs1657502	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:61,56:32:117:0.479:2	0/1:27,30:32:57:0.526:2	0/1:14,4:34:18:0.222:2	./.	0/1:81,87:32:168:0.518:2	./.	0/1:92,78:33:170:0.459:2	0/1:94,75:32:169:0.444:2	./.	./.	0/1:0,87:32:87:1.00:2
chr2	96795714	rs749459	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:36,40:31:76:0.526:2	0/1:24,24:31:48:0.500:2	./.	./.	0/1:23,40:30:63:0.635:2	./.	0/1:28,31:30:59:0.525:2	0/1:34,46:32:80:0.575:2	./.	0/1:35,41:31:76:0.539:2	0/1:25,27:31:52:0.519:2
chr2	96795857	rs749458	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:56,48:29:104:0.462:2	0/1:41,28:29:69:0.406:2	./.	./.	0/1:0,126:29:126:1.00:2	0/1:87,59:28:146:0.404:2	0/1:1,136:29:137:0.993:2	0/1:72,73:29:145:0.503:2	./.	0/1:62,74:29:136:0.544:2	0/1:0,133:29:133:1.00:2
chr2	96798305	rs41320144	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,50:31:102:0.490:2	0/1:25,37:31:62:0.597:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	96798356	rs139152188	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,41:31:90:0.456:2	0/1:31,27:29:58:0.466:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	96798440	rs61735195	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,32:31:59:0.542:2	./.
chr2	96804107	rs72825845	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,47:31:126:0.373:2	0/1:46,27:32:73:0.370:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	96859034	rs997547	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,32:29:88:0.364:2	./.	./.	./.	./.	./.	./.
chr2	96919642	rs3852673	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,72:31:131:0.554:2	./.	./.	./.	./.	./.	./.
chr2	96944553	rs772175	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,14:32:31:0.452:2	./.	0/1:122,77:31:199:0.387:2	./.	0/1:97,96:31:193:0.497:2	0/1:103,87:31:190:0.458:2	./.	./.	0/1:84,107:31:191:0.560:2
chr2	96949427	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,8:17:93:0.086:2
chr2	96950986	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,4:30:84:0.048:2	./.	./.	./.	./.	./.	./.
chr2	96952833	rs3171927	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,70:33:158:0.443:2	./.	./.	./.	./.	0/1:58,60:32:118:0.508:2	0/1:95,74:33:169:0.438:2
chr2	96992817	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:33:128:0.031:2	./.
chr2	96993195	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,63:29:123:0.512:2	./.	./.	./.	./.	./.	./.	./.
chr2	96993435	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,68:32:128:0.531:2	./.	./.	./.	./.	./.
chr2	96993757	rs2279105	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,3:33:41:0.073:2	./.	./.	./.	./.	./.	./.	./.	0/1:45,26:32:71:0.366:2	0/1:42,42:30:84:0.500:2
chr2	96993884	rs1048675	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,25:27:65:0.385:2	0/1:43,43:30:86:0.500:2
chr2	97020049	rs3731935	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,18:30:50:0.360:2	0/1:26,23:27:49:0.469:2
chr2	97030247	rs2305935	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,44:32:95:0.463:2	0/1:62,65:33:128:0.512:2
chr2	97217910	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,15:32:35:0.441:2	./.	./.	./.	./.
chr2	97270100	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,4:31:20:0.200:2	./.
chr2	97271090	rs35715176	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,79:30:195:0.405:2	./.	./.	./.	./.	./.	./.	./.
chr2	97297114	rs35809433	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,100:30:192:0.521:2	./.	./.	./.	./.	./.	./.	./.
chr2	97297206	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:32:157:0.025:2	./.	./.	./.	./.
chr2	97327516	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:30:130:0.031:2
chr2	97350110	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,6:26:107:0.056:2	./.	./.	./.	./.	./.
chr2	97351840	rs7599598	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,18:31:64:0.281:2	0/1:0,78:29:78:1.00:2	./.	0/1:35,16:30:51:0.314:2	0/1:38,22:31:60:0.367:2	./.	./.	./.
chr2	97359364	rs61750875	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,18:29:44:0.409:2	0/1:43,28:30:71:0.394:2	./.	./.	./.	./.	./.	./.
chr2	97366088	rs61742095	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,22:32:39:0.564:2	0/1:30,32:33:62:0.516:2	./.	./.	./.	./.	./.	./.
chr2	97368407	rs377218922	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:31:129:0.031:2	./.	./.	./.	./.
chr2	97493877	rs1320149	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,80:31:177:0.452:2	0/1:109,81:29:190:0.426:2	0/1:97,89:30:186:0.478:2	./.	./.	./.	./.	./.
chr2	97508164	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,4:35:19:0.211:2
chr2	97514090	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	97519159	rs138273341	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,32:32:60:0.533:2	0/1:22,23:32:45:0.511:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	97519206	rs201620346	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,94:31:197:0.477:2	./.	./.	./.	./.	./.	./.
chr2	97526799	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,32:31:58:0.552:2	./.	./.	./.	./.	./.	./.
chr2	97559759	rs11677797	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	0/1:47,48:30:95:0.505:2	./.	./.	./.	0/1:83,4:33:87:0.046:2	./.	0/1:25,25:30:50:0.500:2
chr2	97587363	rs377110345	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:125,4:30:129:0.031:2	./.	0/1:70,62:33:132:0.470:2	./.	./.	./.	./.
chr2	97613616	rs1624844	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,93:28:93:1.00:2	0/1:0,51:27:51:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,93:27:93:1.00:2	0/1:38,50:27:88:0.568:2	0/1:0,117:27:117:1.00:2	0/1:0,71:27:71:1.00:2	0/1:0,109:28:109:1.00:2	0/1:0,96:28:96:1.00:2	0/1:0,69:28:70:1.00:2	0/1:1,108:26:109:0.991:2
chr2	97617140	rs1257019	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,125:31:126:0.992:2	0/1:1,84:31:85:0.988:2	0/1:0,14:30:14:1.00:2	0/1:0,141:31:141:1.00:2	0/1:106,67:30:173:0.387:2	0/1:1,165:29:166:0.994:2	0/1:4,176:30:182:0.978:2	0/1:1,174:30:175:0.994:2	0/1:0,165:31:165:1.00:2	0/1:0,116:30:116:1.00:2	0/1:0,101:31:101:1.00:2
chr2	97633266	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:32:40:0.100:2
chr2	97637905	rs6715329	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:32:62:1.00:2	0/1:1,37:31:38:0.974:2	0/1:0,8:31:8:1.00:2	0/1:0,77:32:77:1.00:2	0/1:35,43:33:78:0.551:2	0/1:0,85:32:85:1.00:2	0/1:1,50:32:51:0.980:2	0/1:2,89:32:91:0.978:2	0/1:0,58:33:58:1.00:2	0/1:2,67:32:69:0.971:2	0/1:0,50:32:50:1.00:2
chr2	97638038	rs1730120	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:28:56:1.00:2	0/1:0,39:27:39:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,99:28:99:1.00:2	0/1:81,37:27:118:0.314:2	0/1:0,77:28:77:1.00:2	0/1:2,95:26:97:0.979:2	0/1:0,95:27:95:1.00:2	0/1:0,76:27:76:1.00:2	0/1:0,55:27:55:1.00:2	0/1:0,69:27:69:1.00:2
chr2	97749730	rs113222096	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,31:30:67:0.463:2	./.	./.	./.
chr2	97757249	rs142838047	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:99,4:32:103:0.039:2	0/1:32,9:31:41:0.220:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	97757290	rs201241480	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,39:31:120:0.325:2	0/1:52,28:31:80:0.350:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	97757296	rs201521399	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,39:31:122:0.320:2	0/1:49,27:31:76:0.355:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	97779611	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,5:33:115:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	98123493	rs200556363	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:62,6:34:68:0.088:2	0/1:37,3:32:40:0.075:2	./.	0/1:48,4:33:52:0.077:2	0/1:45,6:33:51:0.118:2	0/1:46,6:30:52:0.115:2	0/1:26,3:33:29:0.103:2	0/1:70,5:33:75:0.067:2	0/1:55,4:28:59:0.068:2	0/1:34,6:34:40:0.150:2	0/1:48,4:33:52:0.077:2
chr2	98123513	rs201369506	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:59,4:32:63:0.063:2	0/1:32,6:31:38:0.158:2	./.	0/1:50,4:31:54:0.074:2	0/1:60,6:31:66:0.091:2	0/1:46,4:31:50:0.080:2	./.	0/1:75,5:31:80:0.063:2	0/1:63,7:31:70:0.100:2	0/1:40,6:30:46:0.130:2	0/1:63,4:32:67:0.060:2
chr2	98123514	rs199683914	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:59,4:32:63:0.063:2	0/1:32,6:32:38:0.158:2	./.	0/1:50,4:32:54:0.074:2	0/1:60,6:32:66:0.091:2	0/1:46,4:32:50:0.080:2	./.	0/1:75,5:32:80:0.063:2	0/1:63,7:33:70:0.100:2	0/1:42,5:28:47:0.106:2	0/1:65,4:33:69:0.058:2
chr2	98124059	rs201806630	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:26,9:27:35:0.257:2	0/1:19,3:32:22:0.136:2	./.	0/1:21,4:29:25:0.160:2	./.	./.	./.	./.	0/1:40,7:28:47:0.149:2	0/1:22,5:31:27:0.185:2	./.
chr2	98124087	rs200790071	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,3:32:27:0.111:2	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:32:38:0.079:2	./.	0/1:29,3:33:32:0.094:2
chr2	98124465	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:189,5:33:194:0.026:2	0/1:186,6:32:192:0.031:2	0/1:93,7:31:100:0.070:2	0/1:189,10:31:199:0.050:2	./.	0/1:190,7:32:197:0.036:2	./.	./.	./.	0/1:186,5:31:191:0.026:2	0/1:185,9:31:194:0.046:2
chr2	98124466	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:187,5:31:192:0.026:2	0/1:190,6:31:196:0.031:2	0/1:95,5:31:100:0.050:2	0/1:191,8:31:199:0.040:2	./.	0/1:192,6:30:198:0.030:2	./.	./.	./.	./.	0/1:188,6:29:194:0.031:2
chr2	98124469	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:191,7:29:199:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr2	98127653	.	T	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,52:33:72:0.722:2	0/1:9,38:32:47:0.809:2	0/1:5,6:33:11:0.545:2	0/1:62,46:33:108:0.426:2	0/1:15,42:31:57:0.737:2	0/1:51,7:33:58:0.121:2	0/1:60,12:33:72:0.167:2	0/1:42,35:32:77:0.455:2	0/1:22,54:34:76:0.711:2	0/1:19,46:32:65:0.708:2	0/1:40,68:33:108:0.630:2
chr2	98127701	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,6:30:113:0.053:2	./.	./.	./.	./.
chr2	98127807	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:127,6:31:133:0.045:2	./.	./.	./.	0/1:125,10:32:135:0.074:2	0/1:164,12:31:176:0.068:2	0/1:121,7:30:128:0.055:2	0/1:163,8:31:171:0.047:2	0/1:172,9:33:181:0.050:2	0/1:134,9:32:143:0.063:2	./.
chr2	98128193	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:33:3:1.00:2	0/1:0,2:32:2:1.00:2
chr2	98128256	rs140876104	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:163,25:30:188:0.133:2	0/1:125,25:31:150:0.167:2	./.	0/1:183,12:31:195:0.062:2	0/1:177,18:30:195:0.092:2	0/1:184,8:29:192:0.042:2	0/1:192,6:31:198:0.030:2	0/1:189,9:31:198:0.045:2	0/1:186,5:31:191:0.026:2	0/1:165,24:31:189:0.127:2	0/1:176,20:31:196:0.102:2
chr2	98128258	rs148854709	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:165,25:32:190:0.132:2	0/1:135,24:32:159:0.151:2	./.	0/1:182,12:32:194:0.062:2	0/1:176,18:31:194:0.093:2	0/1:185,7:29:192:0.036:2	0/1:188,7:33:195:0.036:2	0/1:190,9:32:200:0.045:2	0/1:183,5:33:188:0.027:2	0/1:166,24:32:190:0.126:2	0/1:178,18:31:196:0.092:2
chr2	98128286	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,6:33:196:0.031:2	0/1:189,5:34:194:0.026:2	./.	./.	./.	./.
chr2	98128313	rs202131502	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:148,34:31:183:0.187:2	0/1:154,32:32:186:0.172:2	0/1:61,6:31:67:0.090:2	0/1:159,35:31:194:0.180:2	0/1:135,49:30:184:0.266:2	0/1:177,21:31:198:0.106:2	0/1:151,16:31:167:0.096:2	0/1:143,55:31:198:0.278:2	0/1:145,52:32:197:0.264:2	0/1:156,31:32:187:0.166:2	0/1:164,29:33:193:0.150:2
chr2	98128364	rs200630019	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:159,14:27:173:0.081:2	0/1:136,15:22:151:0.099:2	./.	0/1:120,8:27:128:0.063:2	0/1:135,23:28:158:0.146:2	./.	0/1:172,12:28:184:0.065:2	./.
chr2	98128402	rs200935570	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:31:173:0.023:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,7:32:165:0.042:2
chr2	98128421	rs200637231	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:34:100:0.040:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	98129670	rs146414302	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:121,6:31:127:0.047:2	0/1:118,4:32:122:0.033:2	./.	0/1:132,5:29:137:0.036:2	0/1:139,12:30:151:0.079:2	./.	0/1:152,6:30:158:0.038:2	0/1:135,9:31:144:0.063:2	./.	0/1:111,5:29:116:0.043:2	./.
chr2	98129682	rs140574837	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:105,9:32:114:0.079:2	0/1:107,15:31:122:0.123:2	0/1:72,6:30:78:0.077:2	0/1:139,8:31:147:0.054:2	0/1:141,10:32:151:0.066:2	0/1:125,6:32:131:0.046:2	0/1:149,11:32:160:0.069:2	0/1:144,10:30:154:0.065:2	./.	0/1:104,12:31:116:0.103:2	./.
chr2	98129683	rs146417104	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:107,6:33:113:0.053:2	0/1:115,7:32:122:0.057:2	./.	./.	0/1:147,7:32:154:0.045:2	./.	0/1:153,7:29:160:0.044:2	./.	./.	./.	./.
chr2	98129744	rs141594775	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,82:33:164:0.500:2	0/1:80,69:33:149:0.463:2	0/1:61,20:33:81:0.247:2	0/1:94,83:32:177:0.469:2	0/1:82,62:32:144:0.431:2	0/1:78,93:32:171:0.544:2	0/1:87,67:32:154:0.435:2	0/1:85,90:32:175:0.514:2	0/1:79,93:33:172:0.541:2	0/1:57,100:32:157:0.637:2	0/1:100,76:32:176:0.432:2
chr2	98129817	rs199911436	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:109,81:34:190:0.426:2	0/1:88,94:33:182:0.516:2	0/1:31,37:33:68:0.544:2	0/1:87,103:34:190:0.542:2	0/1:92,83:33:175:0.474:2	0/1:115,79:33:194:0.407:2	0/1:118,51:33:169:0.302:2	0/1:91,100:33:191:0.524:2	0/1:63,127:34:190:0.668:2	0/1:105,87:33:193:0.453:2	0/1:142,53:33:195:0.272:2
chr2	98139864	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,10:30:47:0.213:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	98152782	rs2922565	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,4:31:5:0.800:2	./.	./.	./.	./.	./.	./.
chr2	98154616	rs183246566	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,7:30:197:0.036:2	./.	0/1:192,5:31:197:0.025:2	./.	0/1:186,8:31:194:0.041:2	0/1:174,4:32:178:0.022:2	0/1:84,8:31:92:0.087:2	0/1:74,5:26:79:0.063:2
chr2	98154623	rs187904341	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,47:32:55:0.855:2	0/1:2,26:31:28:0.929:2	./.	0/1:161,36:32:197:0.183:2	0/1:10,23:30:33:0.697:2	./.	0/1:153,35:31:188:0.186:2	0/1:160,34:31:194:0.175:2	./.	0/1:13,82:31:95:0.863:2	0/1:9,79:31:88:0.898:2
chr2	98156569	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.
chr2	98158436	rs200052591	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,4:32:48:0.083:2	./.	./.	./.	./.	./.	./.	./.
chr2	98160408	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,3:33:26:0.115:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,3:32:42:0.071:2
chr2	98160442	rs200033395	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,10:32:10:1.00:2	0/1:0,15:32:15:1.00:2	./.	0/1:1,18:32:19:0.947:2	0/1:0,10:31:10:1.00:2	0/1:13,5:32:18:0.278:2	0/1:4,13:32:17:0.765:2	0/1:6,16:32:22:0.727:2	0/1:4,10:34:14:0.714:2	0/1:0,15:32:15:1.00:2	0/1:0,20:32:20:1.00:2
chr2	98162183	rs202068566	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,6:30:30:0.200:2	./.	./.	./.	0/1:137,12:31:149:0.081:2	0/1:128,7:31:136:0.052:2	./.	0/1:1,2:32:3:0.667:2	0/1:4,26:31:30:0.867:2
chr2	98164184	rs13001728	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,187:32:193:0.979:2	0/1:2,123:32:125:0.984:2	0/1:24,20:31:44:0.455:2	0/1:95,92:32:187:0.492:2	0/1:3,157:32:160:0.981:2	./.	0/1:105,70:32:175:0.400:2	0/1:101,96:32:197:0.487:2	0/1:120,74:33:194:0.381:2	0/1:5,189:32:194:0.974:2	0/1:2,186:32:189:0.989:2
chr2	98169816	rs200751592	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:32:107:0.037:2	./.	./.	./.	./.
chr2	98201858	rs2442304	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:160,21:31:181:0.116:2	0/1:143,24:32:167:0.144:2	0/1:34,5:31:39:0.128:2	0/1:170,28:31:198:0.141:2	./.	0/1:185,8:30:193:0.041:2	0/1:167,12:33:179:0.067:2	0/1:182,15:31:197:0.076:2	0/1:184,14:33:198:0.071:2	0/1:161,23:31:184:0.125:2	./.
chr2	98273661	rs2290124	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,35:33:35:1.00:2	0/1:0,20:32:20:1.00:2	./.	0/1:19,34:32:53:0.642:2	0/1:0,53:32:53:1.00:2	./.	./.	0/1:58,42:32:100:0.420:2	0/1:42,36:33:78:0.462:2	0/1:0,48:33:48:1.00:2	0/1:0,64:32:64:1.00:2
chr2	98274527	rs1042705	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,30:33:30:1.00:2	0/1:0,23:33:23:1.00:2	./.	0/1:19,12:31:31:0.387:2	0/1:0,33:30:33:1.00:2	./.	./.	0/1:16,36:32:52:0.692:2	0/1:24,13:32:37:0.351:2	0/1:0,37:32:37:1.00:2	0/1:0,36:32:36:1.00:2
chr2	98275841	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:33:64:0.063:2	./.
chr2	98280312	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	98354511	rs3192177	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:61,37:31:98:0.378:2	0/1:32,12:31:44:0.273:2	./.	./.	0/1:88,84:30:173:0.488:2	./.	./.	./.	./.	0/1:56,52:31:108:0.481:2	./.
chr2	98373583	rs184894242	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,21:31:59:0.356:2	./.	./.	./.	./.	./.
chr2	98376209	rs191573811	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,18:32:40:0.450:2	0/1:14,7:32:21:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	98409046	rs12995673	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:24,30:31:54:0.556:2	0/1:14,8:32:22:0.364:2	./.	./.	0/1:15,16:31:31:0.516:2	./.	./.	./.	./.	0/1:7,23:33:30:0.767:2	./.
chr2	98430561	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,5:31:107:0.047:2	./.	./.	./.
chr2	98431739	rs372623622	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:30:70:0.057:2	./.	./.	./.	./.	./.
chr2	98525107	rs1317178	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,113:33:113:1.00:2	0/1:0,56:33:56:1.00:2	0/1:0,14:33:14:1.00:2	0/1:54,54:32:108:0.500:2	0/1:0,76:32:76:1.00:2	0/1:70,73:32:143:0.510:2	./.	0/1:59,59:33:118:0.500:2	0/1:68,60:33:129:0.469:2	0/1:0,100:33:100:1.00:2	0/1:1,149:33:150:0.993:2
chr2	98611994	rs2279824	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:31:2:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,2:33:2:1.00:2	./.	./.	0/1:0,3:32:3:1.00:2	./.	0/1:0,6:31:6:1.00:2	0/1:0,3:30:3:1.00:2
chr2	98709684	rs298917	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:82,61:29:143:0.427:2	0/1:37,54:28:91:0.593:2	./.	./.	./.	./.	0/1:111,66:29:177:0.373:2	./.	0/1:101,73:30:174:0.420:2	./.	./.
chr2	98736225	rs2305355	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,29:32:54:0.537:2	./.	./.
chr2	98779439	rs62154921	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:18,18:30:36:0.500:2	0/1:12,7:32:19:0.368:2	./.	./.	./.	./.	0/1:35,21:31:56:0.375:2	0/1:31,24:31:55:0.436:2	./.	./.	./.
chr2	98795792	rs4851884	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:94,6:33:100:0.060:2	0/1:8,8:32:16:0.500:2	0/1:3,161:32:165:0.982:2	./.	0/1:1,135:32:136:0.993:2	0/1:2,122:32:124:0.984:2	0/1:101,77:32:178:0.433:2	0/1:119,66:34:185:0.357:2	./.	0/1:0,137:32:137:1.00:2
chr2	98809432	rs74735968	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,47:32:113:0.416:2	./.
chr2	98844674	rs7601049	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,7:32:28:0.250:2	0/1:8,5:32:13:0.385:2	0/1:0,3:32:3:1.00:2	0/1:0,25:32:25:1.00:2	0/1:22,3:32:25:0.120:2	0/1:0,25:32:25:1.00:2	0/1:0,12:32:12:1.00:2	0/1:17,10:33:27:0.370:2	0/1:17,10:33:27:0.370:2	0/1:8,9:34:17:0.529:2	0/1:0,27:33:27:1.00:2
chr2	98851162	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,4:31:59:0.068:2	./.	./.	./.	./.	./.	./.
chr2	98853173	rs11889349	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:32:6:0.500:2	0/1:22,25:31:47:0.532:2	./.	0/1:0,50:31:50:1.00:2	0/1:0,65:31:65:1.00:2	./.	0/1:23,25:32:48:0.521:2	0/1:19,28:32:47:0.596:2	0/1:0,43:32:43:1.00:2
chr2	98928429	rs17428626	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,13:33:26:0.500:2	0/1:10,7:30:18:0.412:2	0/1:3,4:32:7:0.571:2	0/1:20,15:31:35:0.429:2	./.	./.	./.	0/1:10,13:31:23:0.565:2	./.	./.	./.
chr2	98928494	rs7587534	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:32:18:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,24:31:25:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,14:31:14:1.00:2
chr2	98948224	rs13427344	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,75:31:77:0.974:2	0/1:1,48:32:49:0.980:2	./.	0/1:47,28:32:75:0.373:2	0/1:1,64:31:65:0.985:2	./.	./.	0/1:0,86:31:86:1.00:2	0/1:23,40:31:63:0.635:2	0/1:31,21:31:52:0.404:2	./.
chr2	98986510	rs6727412	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:21,22:32:43:0.512:2	0/1:20,15:31:35:0.429:2	./.	./.	0/1:29,9:30:38:0.237:2	./.	./.	0/1:18,33:31:51:0.647:2	0/1:26,20:33:46:0.435:2	./.	./.
chr2	98994615	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:31:144:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	99012580	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,4:33:119:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr2	99012976	rs190014426	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,47:32:127:0.370:2	./.	./.	./.	./.	./.	./.
chr2	99149946	rs2278211	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,15:33:36:0.417:2	0/1:10,16:32:26:0.615:2	0/1:5,3:31:8:0.375:2	0/1:0,69:32:69:1.00:2	0/1:48,36:32:84:0.429:2	0/1:0,50:32:50:1.00:2	./.	0/1:46,28:33:74:0.378:2	./.	./.	./.
chr2	99160361	rs2230387	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,17:30:74:0.230:2	./.	./.	./.	./.	./.	./.	./.
chr2	99162439	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:34:78:0.051:2	./.
chr2	99172243	rs41486345	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,34:30:84:0.405:2	./.	./.	./.	./.	./.	./.
chr2	99172244	rs2278206	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,15:28:33:0.455:2	0/1:16,12:30:29:0.429:2	./.	0/1:0,69:31:69:1.00:2	0/1:36,46:30:82:0.561:2	0/1:1,74:31:75:0.987:2	./.	0/1:48,34:30:82:0.415:2	0/1:37,29:30:67:0.439:2	./.	./.
chr2	99193496	rs2230388	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,63:31:129:0.488:2	0/1:43,34:31:77:0.442:2	0/1:9,24:31:33:0.727:2	0/1:0,175:30:175:1.00:2	0/1:107,75:30:182:0.412:2	0/1:1,178:30:179:0.994:2	./.	0/1:98,69:31:168:0.413:2	0/1:96,85:31:182:0.470:2	./.	./.
chr2	99226173	rs1062847	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,34:32:76:0.447:2	0/1:23,22:32:45:0.489:2	0/1:2,3:31:5:0.600:2	0/1:0,78:33:79:1.00:2	0/1:25,24:31:49:0.490:2	0/1:2,73:32:75:0.973:2	./.	0/1:65,27:33:92:0.293:2	0/1:52,35:33:87:0.402:2	./.	./.
chr2	99227239	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:32:199:0.020:2	./.	./.	./.	./.	./.
chr2	99232781	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:33:108:0.037:2	./.	./.	./.	./.	./.
chr2	99271976	rs61748145	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,30:32:71:0.423:2	0/1:25,24:32:49:0.490:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	99274653	rs2271670	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,40:31:93:0.430:2	0/1:23,24:31:47:0.511:2	./.	./.	0/1:44,27:31:71:0.380:2	0/1:59,41:31:100:0.410:2	0/1:44,33:31:77:0.429:2	0/1:66,50:31:116:0.431:2
chr2	99279580	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:33:169:0.024:2	./.	./.
chr2	99412674	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:29:53:0.075:2	./.
chr2	99439603	rs149622421	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:30:11:0.455:2	./.	./.	./.	./.	./.	0/1:2,5:29:7:0.714:2	./.
chr2	99767073	rs139891421	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,30:32:71:0.423:2	./.	./.	./.	./.	./.	./.	./.
chr2	99778444	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:32:124:0.032:2	./.	./.	./.	./.
chr2	99778985	rs2632277	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:33:68:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,6:33:6:1.00:2	0/1:67,54:32:121:0.446:2	0/1:51,28:32:79:0.354:2	./.	0/1:44,40:33:84:0.476:2	0/1:62,56:33:118:0.475:2	./.	0/1:0,54:33:54:1.00:2	0/1:2,101:33:103:0.981:2
chr2	99779131	rs2516835	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:32:33:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,3:32:3:1.00:2	0/1:19,15:31:34:0.441:2	0/1:18,10:30:28:0.357:2	./.	0/1:9,14:32:23:0.609:2	0/1:10,13:32:23:0.565:2	./.	0/1:0,23:33:23:1.00:2	0/1:0,53:31:53:1.00:2
chr2	99804642	rs10865030	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:31:73:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,98:30:98:1.00:2	0/1:0,64:30:64:1.00:2	0/1:0,89:30:89:1.00:2	0/1:52,27:31:79:0.342:2	0/1:0,108:30:109:1.00:2	0/1:0,121:31:121:1.00:2	0/1:0,82:29:82:1.00:2	0/1:1,148:30:149:0.993:2
chr2	99804657	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:31:153:0.026:2	./.	./.
chr2	99804707	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,5:28:165:0.030:2	./.	./.
chr2	99811314	rs142661815	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,46:29:87:0.529:2	./.	./.	./.	./.	./.
chr2	99812070	rs1044575	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,104:32:105:0.990:2	0/1:0,78:32:78:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,119:31:119:1.00:2	0/1:81,67:31:148:0.453:2	./.	0/1:69,76:31:145:0.524:2	0/1:81,78:32:159:0.491:2	./.	0/1:0,103:31:103:1.00:2	0/1:1,117:32:118:0.992:2
chr2	99812108	rs7572157	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,48:29:164:0.293:2	./.	./.	./.	./.	./.	./.	./.
chr2	99976813	rs41280587	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,15:30:30:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr2	99978048	rs12233086	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:53,33:32:86:0.384:2	0/1:31,16:32:47:0.340:2	./.	0/1:38,52:31:90:0.578:2	./.	./.	./.	./.	./.	0/1:57,31:32:88:0.352:2	0/1:0,115:31:115:1.00:2
chr2	99980124	rs74430561	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,75:31:154:0.487:2	./.	./.
chr2	99980811	rs117138860	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,20:28:45:0.444:2	./.	./.	./.	./.	./.	./.	./.
chr2	99992822	rs7558074	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,6:32:14:0.429:2	0/1:4,3:31:7:0.429:2	./.	0/1:0,17:31:17:1.00:2	0/1:10,9:32:19:0.474:2	0/1:0,16:31:16:1.00:2	0/1:10,6:31:16:0.375:2	0/1:5,3:31:8:0.375:2	0/1:0,13:32:13:1.00:2	./.	0/1:0,15:33:15:1.00:2
chr2	99995517	rs11896520	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,15:30:31:0.484:2	0/1:1,51:32:52:0.981:2	./.	0/1:21,19:32:40:0.475:2	0/1:0,59:33:59:1.00:2	./.	./.
chr2	99995804	rs1376443	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,53:30:114:0.469:2	0/1:32,34:30:66:0.515:2	0/1:8,16:30:24:0.667:2	0/1:1,158:30:159:0.994:2	0/1:2,153:29:155:0.987:2	0/1:0,179:29:179:1.00:2	0/1:94,84:29:178:0.472:2	0/1:121,75:30:196:0.383:2	0/1:2,153:31:155:0.987:2	0/1:62,64:30:126:0.508:2	0/1:0,130:30:130:1.00:2
chr2	100010810	rs3197957	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,33:30:70:0.471:2	./.	./.	./.	./.	./.	./.	./.
chr2	100017805	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,3:32:42:0.071:2	./.
chr2	100019215	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:33:138:0.029:2
chr2	100019496	rs2305354	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,19:31:45:0.422:2	0/1:18,12:30:30:0.400:2	0/1:4,4:30:8:0.500:2	0/1:0,37:30:37:1.00:2	0/1:23,6:30:29:0.207:2	0/1:2,24:29:26:0.923:2	0/1:25,7:31:32:0.219:2	0/1:21,12:29:33:0.364:2	0/1:0,34:30:34:1.00:2	0/1:31,21:30:52:0.404:2	0/1:0,66:30:66:1.00:2
chr2	100024548	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,27:33:67:0.403:2	0/1:19,20:32:39:0.513:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	100055158	rs3087399	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,33:32:63:0.524:2	./.	./.	./.	./.
chr2	100055506	rs3087386	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,36:33:58:0.621:2	0/1:19,20:32:39:0.513:2	0/1:6,4:33:10:0.400:2	0/1:1,88:33:89:0.989:2	0/1:41,40:32:81:0.494:2	0/1:0,79:32:79:1.00:2	0/1:37,47:33:84:0.560:2	0/1:47,54:33:101:0.535:2	0/1:0,84:34:84:1.00:2	0/1:24,17:32:41:0.415:2	0/1:1,68:33:69:0.986:2
chr2	100058870	rs3087403	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,44:30:117:0.376:2	0/1:1,140:29:141:0.993:2	./.	0/1:81,78:30:159:0.491:2	0/1:3,121:31:124:0.976:2	./.	./.
chr2	100175340	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:32:142:0.028:2
chr2	100175346	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,6:33:151:0.040:2
chr2	100210074	rs1047281	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,11:27:35:0.314:2	./.	0/1:26,29:29:55:0.527:2	0/1:13,22:30:35:0.629:2	0/1:13,20:30:33:0.606:2	./.
chr2	100210642	rs1047265	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,76:32:185:0.411:2	./.	0/1:100,75:32:175:0.429:2	0/1:110,85:33:195:0.436:2	0/1:86,77:32:163:0.472:2	./.
chr2	100218080	rs4851214	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:1,3:31:4:0.750:2	0/1:1,3:32:4:0.750:2	./.	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	0/1:4,5:32:9:0.556:2	./.	0/1:0,2:35:2:1.00:2
chr2	100343557	rs4851223	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:32:17:1.00:2	0/1:0,12:31:12:1.00:2	./.	0/1:0,27:31:27:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,27:32:27:1.00:2
chr2	100623773	rs141695864	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,56:31:133:0.421:2	0/1:56,29:32:85:0.341:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	100722358	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:33:73:0.055:2
chr2	100903453	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:33:81:0.049:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	100915330	rs116702638	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,81:31:189:0.429:2	./.	./.	./.	./.	./.
chr2	100915772	rs4851287	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,29:33:63:0.460:2	0/1:27,17:32:44:0.386:2	0/1:0,4:33:4:1.00:2	0/1:47,44:32:91:0.484:2	0/1:0,52:32:52:1.00:2	0/1:29,33:32:62:0.532:2	0/1:0,34:33:34:1.00:2	0/1:83,4:32:87:0.046:2	0/1:0,74:34:74:1.00:2	./.	0/1:1,78:33:79:0.987:2
chr2	100916306	rs2033748	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,21:31:48:0.438:2	0/1:19,18:30:37:0.486:2	0/1:0,9:31:9:1.00:2	0/1:13,18:32:31:0.581:2	0/1:0,19:30:19:1.00:2	0/1:19,21:30:40:0.525:2	0/1:0,47:30:47:1.00:2	./.	0/1:0,44:31:44:1.00:2	./.	0/1:0,60:30:60:1.00:2
chr2	100916315	rs11123823	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,22:33:46:0.478:2	0/1:18,16:32:34:0.471:2	0/1:3,5:33:8:0.625:2	0/1:12,15:31:27:0.556:2	./.	./.	0/1:0,42:32:42:1.00:2	./.	0/1:0,42:33:42:1.00:2	./.	0/1:0,57:32:58:1.00:2
chr2	100917109	rs13006224	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,19:33:37:0.514:2	0/1:28,7:33:35:0.200:2	0/1:4,4:31:8:0.500:2	0/1:40,31:33:71:0.437:2	./.	./.	0/1:0,60:32:60:1.00:2	./.	0/1:0,73:33:73:1.00:2	./.	0/1:1,59:32:60:0.983:2
chr2	101010082	rs3748930	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,39:28:64:0.609:2	0/1:18,19:28:37:0.514:2	0/1:3,4:28:7:0.571:2	0/1:27,32:28:59:0.542:2	0/1:51,4:30:55:0.073:2	./.	0/1:1,42:27:43:0.977:2	./.	0/1:0,79:28:79:1.00:2	./.	0/1:0,77:26:77:1.00:2
chr2	101031561	rs3828193	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,20:31:46:0.435:2	0/1:21,5:32:26:0.192:2	0/1:4,3:30:7:0.429:2	0/1:39,30:30:69:0.435:2	./.	./.	0/1:0,49:29:49:1.00:2	./.	0/1:0,85:31:85:1.00:2	./.	0/1:0,51:31:51:1.00:2
chr2	101086966	rs13411940	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:34,31:32:65:0.477:2	0/1:18,16:32:34:0.471:2	./.	0/1:39,28:31:67:0.418:2	./.	./.	./.	./.	./.	./.	./.
chr2	101096960	rs1519654	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,53:30:93:0.570:2	0/1:24,34:31:58:0.586:2	0/1:5,4:32:9:0.444:2	0/1:70,74:31:144:0.514:2	0/1:69,51:30:120:0.425:2	./.	./.	0/1:67,64:30:131:0.489:2	0/1:64,73:32:137:0.533:2	./.	0/1:0,115:31:115:1.00:2
chr2	101186088	rs1052117	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:32:73:1.00:2	0/1:0,58:32:58:1.00:2	0/1:6,7:30:13:0.538:2	0/1:59,42:31:101:0.416:2	0/1:41,14:31:55:0.255:2	0/1:102,13:32:115:0.113:2	./.	./.	0/1:66,51:32:117:0.436:2	0/1:119,14:33:133:0.105:2	0/1:0,121:32:121:1.00:2
chr2	101188227	rs143476375	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,7:32:8:0.875:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	101192883	rs4618078	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,20:30:57:0.351:2	./.	./.	./.	0/1:46,11:32:57:0.193:2	./.
chr2	101437561	rs6542989	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,76:31:177:0.429:2	0/1:88,54:31:142:0.380:2	./.
chr2	101437601	rs6542990	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,66:33:142:0.465:2	0/1:49,41:32:90:0.456:2	./.
chr2	101541637	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:33:66:0.061:2	./.	./.	./.	./.
chr2	101580575	rs41280595	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,33:29:80:0.413:2	./.	./.	./.	./.	./.
chr2	101582190	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,10:32:21:0.476:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	101587455	rs1562313	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,50:32:121:0.413:2	0/1:56,28:32:84:0.333:2	0/1:50,24:32:74:0.324:2	0/1:46,35:30:81:0.432:2
chr2	101591304	rs2305160	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:22,28:29:50:0.560:2	0/1:6,20:30:26:0.769:2	0/1:0,8:29:8:1.00:2	./.	0/1:43,41:29:86:0.488:2	0/1:40,35:29:75:0.467:2	0/1:34,49:30:83:0.590:2	0/1:61,47:29:109:0.435:2	0/1:0,54:29:54:1.00:2	0/1:0,52:29:52:1.00:2	0/1:0,51:29:51:1.00:2
chr2	101594191	rs11541353	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,20:31:49:0.408:2	./.	./.	./.	./.	./.
chr2	101606909	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:31:76:0.053:2	./.	./.	./.	./.	./.
chr2	101609827	rs9223	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:32:11:1.00:2	./.	0/1:63,47:32:110:0.427:2	0/1:93,55:31:148:0.372:2	0/1:71,45:32:116:0.388:2	./.	./.	0/1:0,113:33:113:1.00:2	0/1:77,50:32:127:0.394:2
chr2	101619171	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,93:32:187:0.497:2	./.	./.	./.	./.	./.
chr2	101619226	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	0/1:190,5:30:195:0.026:2	./.	./.	./.	./.
chr2	101624471	rs746924	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,31:31:67:0.463:2	0/1:31,27:32:58:0.466:2	0/1:0,3:32:3:1.00:2	0/1:43,31:29:74:0.419:2	0/1:0,49:30:49:1.00:2	0/1:1,67:31:68:0.985:2	0/1:2,47:31:49:0.959:2	0/1:36,44:31:80:0.550:2	0/1:52,23:33:75:0.307:2	0/1:0,51:33:51:1.00:2	0/1:57,51:30:108:0.472:2
chr2	101627925	rs1062062	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,15:33:34:0.441:2	0/1:13,11:33:24:0.458:2	./.	./.	./.	0/1:32,16:31:48:0.333:2	./.	./.	./.	./.	./.
chr2	101635443	rs371612020	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:34:124:0.032:2	./.
chr2	101638828	rs34685616	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,40:32:80:0.500:2	0/1:14,16:32:30:0.533:2	./.	./.	./.	0/1:59,61:32:120:0.508:2	./.	./.	./.	./.	./.
chr2	101638888	rs3739014	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,27:30:54:0.500:2	0/1:9,13:30:22:0.591:2	0/1:0,5:28:5:1.00:2	0/1:43,26:30:69:0.377:2	0/1:1,52:30:53:0.981:2	0/1:0,62:29:62:1.00:2	0/1:3,53:30:56:0.946:2	0/1:56,35:29:91:0.385:2	0/1:25,24:30:49:0.490:2	0/1:0,46:30:46:1.00:2	0/1:32,28:30:60:0.467:2
chr2	101644855	rs11683877	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	0/1:5,12:33:17:0.706:2	0/1:14,22:32:36:0.611:2	0/1:11,8:32:19:0.421:2	./.	./.	0/1:0,38:32:38:1.00:2	0/1:21,14:33:35:0.400:2
chr2	101646144	rs3739015	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,81:32:176:0.460:2	0/1:87,75:31:162:0.463:2	./.	0/1:96,64:32:160:0.400:2	0/1:88,76:32:164:0.463:2	0/1:74,80:33:154:0.519:2	./.	./.
chr2	101656726	rs2289953	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,19:30:46:0.413:2	0/1:21,23:29:44:0.523:2	0/1:0,6:31:6:1.00:2	0/1:47,31:28:78:0.397:2	0/1:1,95:29:96:0.990:2	0/1:0,80:29:80:1.00:2	0/1:0,97:29:97:1.00:2	0/1:50,45:29:95:0.474:2	0/1:38,34:30:72:0.472:2	0/1:1,50:29:51:0.980:2	0/1:36,20:28:56:0.357:2
chr2	101869588	rs2272320	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.
chr2	101898412	rs13151	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:33:80:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,89:33:89:1.00:2	0/1:0,115:32:115:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,115:33:116:1.00:2	0/1:0,110:33:110:1.00:2	0/1:60,56:34:116:0.483:2	0/1:0,93:33:93:1.00:2	0/1:0,95:33:95:1.00:2
chr2	102018908	rs2175968	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,35:28:55:0.636:2	0/1:10,20:27:30:0.667:2	0/1:0,9:30:9:1.00:2	0/1:0,71:28:71:1.00:2	0/1:30,38:27:68:0.559:2	0/1:32,26:27:58:0.448:2	0/1:1,96:28:97:0.990:2	0/1:44,46:29:90:0.511:2	0/1:0,48:29:48:1.00:2	./.	0/1:33,40:29:73:0.548:2
chr2	102038849	rs4851436	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:33:85:1.00:2	0/1:0,59:33:59:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,124:33:124:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,96:32:96:1.00:2	0/1:1,126:33:127:0.992:2	0/1:0,127:34:127:1.00:2	0/1:0,101:33:101:1.00:2	0/1:0,140:33:140:1.00:2
chr2	102314618	rs142097566	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,7:32:13:0.538:2	./.	./.	./.	./.	./.	./.
chr2	102472459	rs1139583	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:33:3:1.00:2	./.	0/1:20,17:32:37:0.459:2	./.	0/1:22,24:33:46:0.522:2	0/1:30,41:31:71:0.577:2	./.	./.	./.
chr2	102476215	rs186857052	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,57:30:96:0.600:2	./.
chr2	102486114	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:33:125:0.032:2	./.
chr2	102781649	rs2228139	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,60:30:62:0.984:2	0/1:12,7:32:19:0.368:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	102781651	rs76949245	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:114,48:29:162:0.296:2	./.	0/1:19,11:27:30:0.367:2	0/1:134,44:25:178:0.247:2	0/1:116,50:25:167:0.301:2	0/1:128,48:25:176:0.273:2	0/1:122,56:24:178:0.315:2	0/1:127,49:26:176:0.278:2	0/1:133,40:23:173:0.231:2	0/1:116,60:27:176:0.341:2	0/1:128,41:27:169:0.243:2
chr2	102792875	rs3917320	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,41:30:73:0.562:2	./.	./.	./.
chr2	102842467	rs2302620	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:31:141:0.028:2
chr2	102851693	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,9:32:14:0.643:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	102851708	rs2302612	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,66:28:142:0.465:2	./.	./.	./.
chr2	102955468	rs1041973	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,34:30:79:0.430:2	./.	0/1:30,36:30:66:0.545:2	./.	./.	0/1:68,37:31:105:0.352:2	0/1:73,49:32:122:0.402:2
chr2	102957716	rs1420101	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:31:11:1.00:2	0/1:52,40:31:92:0.435:2	0/1:25,30:31:55:0.545:2	./.	0/1:59,20:31:79:0.253:2	0/1:75,37:30:112:0.330:2	./.	./.	./.
chr2	102968007	rs4988956	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,93:31:93:1.00:2	0/1:1,58:31:59:0.983:2	./.	0/1:41,75:29:116:0.647:2	0/1:69,37:29:106:0.349:2	0/1:57,55:30:112:0.491:2	0/1:58,33:31:91:0.363:2	0/1:64,42:30:107:0.396:2	./.	0/1:0,93:31:93:1.00:2	0/1:82,37:32:119:0.311:2
chr2	102968075	rs4988957	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,108:33:108:1.00:2	0/1:0,69:32:69:1.00:2	./.	0/1:79,91:32:170:0.535:2	0/1:97,78:32:175:0.446:2	0/1:95,99:32:194:0.510:2	0/1:104,92:32:196:0.469:2	0/1:104,87:33:191:0.455:2	./.	0/1:0,134:33:134:1.00:2	0/1:85,66:32:151:0.437:2
chr2	102968211	rs10192036	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,74:32:75:0.987:2	0/1:0,65:32:65:1.00:2	./.	0/1:56,51:31:107:0.477:2	0/1:43,30:32:73:0.411:2	0/1:39,47:32:86:0.547:2	0/1:55,34:32:89:0.382:2	0/1:70,41:32:111:0.369:2	./.	0/1:1,74:32:75:0.987:2	0/1:53,31:33:84:0.369:2
chr2	102968212	rs10204137	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,74:32:75:0.987:2	0/1:0,65:31:65:1.00:2	./.	0/1:56,51:32:107:0.477:2	0/1:43,30:32:73:0.411:2	0/1:39,47:32:86:0.547:2	0/1:56,34:32:90:0.378:2	0/1:70,41:32:111:0.369:2	./.	0/1:0,75:31:75:1.00:2	0/1:53,31:32:84:0.369:2
chr2	102968285	rs4988958	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,59:32:61:0.967:2	0/1:0,28:33:28:1.00:2	./.	0/1:37,22:32:59:0.373:2	0/1:25,19:32:44:0.432:2	0/1:31,20:32:51:0.392:2	0/1:29,23:32:52:0.442:2	0/1:46,32:32:78:0.410:2	./.	0/1:0,44:33:44:1.00:2	0/1:41,33:32:74:0.446:2
chr2	102968356	rs10192157	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,22:32:23:0.957:2	0/1:0,16:31:16:1.00:2	./.	0/1:12,3:33:15:0.200:2	0/1:19,10:31:29:0.345:2	0/1:17,12:31:29:0.414:2	0/1:5,7:31:12:0.583:2	0/1:17,14:29:31:0.452:2	./.	0/1:0,22:32:22:1.00:2	0/1:14,15:32:29:0.517:2
chr2	102968362	rs10206753	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,18:28:18:1.00:2	0/1:0,13:27:13:1.00:2	./.	./.	0/1:18,10:28:28:0.357:2	0/1:14,10:29:24:0.417:2	0/1:5,4:30:9:0.444:2	0/1:16,11:29:27:0.407:2	./.	0/1:0,20:29:20:1.00:2	0/1:13,11:30:24:0.458:2
chr2	102979123	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:31:68:0.059:2
chr2	102979144	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:31:55:0.074:2	./.	./.	./.	./.	./.
chr2	103001402	rs1035130	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:32:4:1.00:2	0/1:0,58:31:58:1.00:2	./.	./.	0/1:22,20:31:42:0.476:2	0/1:50,37:32:87:0.425:2	./.	./.	./.
chr2	103063585	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,4:32:67:0.060:2	./.	./.	./.	./.	./.	./.	./.
chr2	103095404	rs11692304	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,47:26:52:0.979:2	0/1:0,28:30:31:1.00:2	./.	0/1:0,51:28:53:1.00:2	0/1:37,22:27:59:0.373:2	0/1:34,24:28:59:0.414:2	0/1:30,30:27:60:0.500:2	0/1:0,62:29:63:1.00:2	./.	0/1:1,56:28:58:0.982:2	0/1:21,28:29:51:0.571:2
chr2	103095643	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:128,4:33:132:0.030:2	./.	./.	./.	./.	./.	./.
chr2	103149100	rs1014286	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:33:33:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,27:33:27:1.00:2	0/1:22,17:32:39:0.436:2	0/1:17,21:32:38:0.553:2	0/1:0,28:32:28:1.00:2	0/1:0,33:32:33:1.00:2	./.	0/1:1,29:32:30:0.967:2	0/1:21,21:33:42:0.500:2
chr2	103334969	rs1052431	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,36:30:60:0.600:2	./.	./.	0/1:20,39:30:59:0.661:2	0/1:25,33:30:58:0.569:2	0/1:22,28:31:50:0.560:2
chr2	103335441	rs33993717	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,26:32:53:0.491:2	./.
chr2	103335512	rs33988363	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,32:30:73:0.438:2	./.	./.	./.	./.	./.
chr2	103335646	rs115622745	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,62:29:133:0.466:2	./.	./.	./.	./.	./.
chr2	103431404	rs887987	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:29:47:1.00:2	0/1:0,18:28:18:1.00:2	0/1:0,4:27:4:1.00:2	0/1:0,35:28:35:1.00:2	0/1:0,35:28:35:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,31:28:31:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,35:28:35:1.00:2	0/1:0,42:27:42:1.00:2
chr2	105472013	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	105654588	rs13399067	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:30:9:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	105665808	rs11538197	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,19:33:33:0.576:2	0/1:15,8:33:23:0.348:2	./.	./.	./.	0/1:23,28:31:51:0.549:2	./.	./.	0/1:32,21:32:53:0.396:2	0/1:35,20:32:55:0.364:2	./.
chr2	105705507	rs11538198	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,9:31:21:0.429:2	0/1:6,13:32:19:0.684:2	./.	./.	./.	0/1:5,5:30:10:0.500:2	./.	./.	0/1:12,12:32:24:0.500:2	0/1:10,8:31:18:0.444:2	./.
chr2	105707766	rs12620254	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,26:31:59:0.441:2	0/1:27,25:32:52:0.481:2	./.	./.	./.	0/1:35,28:31:63:0.444:2	./.	./.	0/1:45,28:32:73:0.384:2	0/1:37,38:31:75:0.507:2	./.
chr2	105709023	rs6543282	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,20:28:46:0.435:2	0/1:8,5:26:13:0.385:2	0/1:0,2:27:2:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,32:29:32:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,35:29:35:1.00:2	0/1:0,44:29:44:1.00:2	0/1:0,29:29:29:1.00:2	0/1:0,37:28:37:1.00:2
chr2	105713697	rs15567	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,22:30:63:0.355:2	0/1:25,16:30:41:0.390:2	./.	./.	./.	0/1:51,37:28:88:0.420:2	./.	./.	0/1:52,36:30:89:0.409:2	0/1:41,34:27:75:0.453:2	./.
chr2	105859151	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,44:33:84:0.524:2	./.	./.
chr2	105859249	rs35946826	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,54:30:109:0.495:2	./.	./.	./.	0/1:56,36:31:92:0.391:2	0/1:61,37:31:98:0.378:2	./.
chr2	105859871	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,5:29:139:0.036:2	./.	./.	./.	./.	./.	./.	./.
chr2	105885961	rs2241797	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,36:28:84:0.429:2	0/1:31,26:27:57:0.456:2	0/1:7,6:29:13:0.462:2	0/1:65,30:28:95:0.316:2	0/1:38,20:29:58:0.345:2	0/1:50,24:28:74:0.324:2	0/1:26,6:28:32:0.188:2	0/1:52,17:28:69:0.246:2	0/1:52,18:30:70:0.257:2	0/1:34,15:27:49:0.306:2	0/1:14,12:27:26:0.462:2
chr2	105889349	rs11676273	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,33:30:60:0.550:2	./.	./.	./.	./.	0/1:26,20:31:46:0.435:2
chr2	105897003	rs2241799	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:74,65:32:140:0.468:2	0/1:45,57:32:102:0.559:2	0/1:17,7:32:24:0.292:2	./.	0/1:108,77:31:185:0.416:2	./.	./.	./.	0/1:102,83:32:185:0.449:2	./.	./.
chr2	105915128	rs12476720	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:30:6:0.500:2	./.	./.	0/1:0,38:30:38:1.00:2	./.	./.	./.	./.	0/1:24,19:31:43:0.442:2
chr2	105924259	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:30:113:0.036:2	./.	./.	./.
chr2	105924510	rs2241801	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:34,31:27:65:0.477:2	0/1:19,29:28:48:0.604:2	0/1:0,8:29:8:1.00:2	./.	0/1:45,31:27:76:0.408:2	0/1:0,59:27:59:1.00:2	./.	0/1:41,28:28:69:0.406:2	0/1:29,30:28:59:0.508:2	0/1:24,24:28:48:0.500:2	0/1:27,19:26:46:0.413:2
chr2	105954140	rs55772482	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,19:30:34:0.559:2	0/1:16,12:33:28:0.429:2	0/1:9,13:31:22:0.591:2	./.
chr2	105977761	rs11124029	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:32:16:0.563:2	./.	./.	./.	./.	./.	./.	./.	0/1:45,44:33:89:0.494:2
chr2	105977776	rs3087523	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,56:32:107:0.523:2	./.
chr2	105979752	rs137869171	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,91:31:185:0.492:2
chr2	105979777	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:31:144:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	105984056	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.
chr2	106013147	rs34179780	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:20,26:32:46:0.565:2	0/1:15,14:32:29:0.483:2	./.	./.	0/1:29,27:30:56:0.482:2	./.	./.	./.	0/1:53,22:32:75:0.293:2	0/1:41,27:31:68:0.397:2	./.
chr2	106015412	rs76810592	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,9:33:22:0.409:2	./.
chr2	106498425	rs199651832	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.
chr2	106682226	rs4271786	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.
chr2	106682235	rs4266035	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.
chr2	106690493	rs41280609	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,28:32:84:0.333:2	./.	./.	./.	./.	./.	./.	./.
chr2	106742139	rs4851925	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:31:34:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,44:30:44:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,49:31:49:1.00:2
chr2	107021651	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:161,5:32:166:0.030:2	./.	./.	./.	0/1:143,4:31:147:0.027:2	./.	./.	./.
chr2	107021677	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:34:126:0.032:2	./.	./.	./.
chr2	107029575	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,11:32:199:0.055:2	./.	./.	./.
chr2	107032331	rs199544143	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:32:195:0.021:2	./.	./.	./.	./.
chr2	107032343	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.
chr2	107032417	rs9653483	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:98,68:32:166:0.410:2	0/1:88,63:31:152:0.417:2	./.	./.	0/1:82,75:32:157:0.478:2	./.	./.	0/1:80,60:32:140:0.429:2	./.	0/1:2,142:33:145:0.986:2	0/1:84,79:33:163:0.485:2
chr2	107039689	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:28:198:0.025:2
chr2	107039712	rs199800837	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:162,4:33:166:0.024:2	0/1:168,30:31:198:0.152:2	0/1:155,28:32:183:0.153:2	./.	0/1:173,27:34:200:0.135:2	./.	0/1:184,13:33:198:0.066:2
chr2	107039817	rs201174004	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:144,30:32:174:0.172:2	0/1:93,23:32:116:0.198:2	./.	./.	0/1:76,16:31:92:0.174:2	./.	./.	0/1:87,16:31:103:0.155:2	./.	./.	./.
chr2	107039924	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,6:30:71:0.085:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	107040372	rs200719868	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,6:33:183:0.033:2	./.	./.	./.
chr2	107040564	rs55993306	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:31,39:31:70:0.557:2	0/1:136,61:31:197:0.310:2	./.	0/1:117,81:31:198:0.409:2	./.	./.	./.	./.	./.
chr2	107040572	rs200203656	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:168,20:30:189:0.106:2	0/1:168,26:27:196:0.134:2	./.	./.	0/1:190,10:30:200:0.050:2	./.	./.	0/1:190,9:31:199:0.045:2	./.	0/1:9,95:31:104:0.913:2	0/1:172,23:29:197:0.118:2
chr2	107040614	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,5:33:197:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr2	107040963	rs193124838	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,6:32:8:0.750:2	./.	./.	./.	./.	./.	./.
chr2	107040985	rs140856347	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.
chr2	107041057	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,4:33:20:0.200:2	./.	./.	./.	./.	./.	./.
chr2	107041289	.	G	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,6:30:61:0.098:2	0/1:52,5:31:57:0.088:2	./.	0/1:52,8:31:60:0.133:2	./.	0/1:76,8:31:84:0.095:2
chr2	107041403	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:150,10:32:160:0.063:2	./.	./.	0/1:128,4:32:132:0.030:2	0/1:153,6:31:159:0.038:2	./.	./.	./.	./.	0/1:108,5:32:113:0.044:2	./.
chr2	107041424	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:33:139:0.029:2	./.	./.	./.	./.
chr2	107041582	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,28:32:190:0.147:2	./.	./.	./.
chr2	107041612	.	A	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:128,33:31:162:0.205:2	0/1:126,32:32:158:0.203:2	0/1:50,9:32:60:0.153:2	0/1:141,23:32:164:0.140:2	0/1:118,38:31:158:0.244:2	./.	0/1:137,18:33:156:0.116:2	./.	0/1:162,29:31:191:0.152:2	0/1:133,39:32:173:0.227:2	0/1:159,24:29:183:0.131:2
chr2	107041638	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:152,16:33:168:0.095:2	0/1:112,14:30:126:0.111:2	./.	0/1:130,13:32:143:0.091:2	./.	./.	./.	./.	./.	0/1:132,6:31:138:0.043:2	./.
chr2	107049392	rs62152467	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:123,63:33:186:0.339:2	0/1:131,66:32:198:0.335:2	0/1:63,20:31:83:0.241:2	0/1:158,37:32:195:0.190:2	0/1:123,71:32:196:0.366:2	0/1:115,72:31:188:0.385:2	0/1:171,26:32:197:0.132:2	0/1:160,28:31:189:0.149:2	0/1:164,30:33:194:0.155:2	0/1:118,77:32:195:0.395:2	0/1:158,35:33:193:0.181:2
chr2	107049414	rs199953271	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,6:30:188:0.032:2	./.	./.	./.
chr2	107049425	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,6:28:194:0.031:2	./.	./.	./.
chr2	107049447	rs200831096	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:139,44:30:183:0.240:2	0/1:116,17:30:133:0.128:2	0/1:63,9:30:72:0.125:2	0/1:161,31:31:193:0.161:2	0/1:115,32:30:147:0.218:2	0/1:136,56:30:192:0.292:2	0/1:121,9:30:130:0.069:2	0/1:171,14:29:185:0.076:2	0/1:168,25:31:193:0.130:2	0/1:135,52:31:187:0.278:2	0/1:166,24:30:190:0.126:2
chr2	107049604	rs200768799	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,47:30:190:0.247:2	0/1:86,26:29:112:0.232:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	107049703	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,8:31:184:0.043:2	./.	./.	./.
chr2	107049714	rs143879890	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:98,98:33:196:0.500:2	0/1:96,85:32:181:0.470:2	0/1:37,9:32:46:0.196:2	0/1:132,54:33:186:0.290:2	0/1:135,37:32:172:0.215:2	0/1:135,50:32:185:0.270:2	0/1:128,51:32:179:0.285:2	0/1:122,46:32:168:0.274:2	0/1:124,56:33:180:0.311:2	0/1:90,75:32:165:0.455:2	./.
chr2	107052580	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,8:27:195:0.041:2	./.	./.	./.	./.	0/1:188,7:31:195:0.036:2
chr2	107052592	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,6:32:193:0.032:2
chr2	107052596	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:194:0.021:2	./.	./.	./.	./.	./.
chr2	107053276	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:31:168:0.024:2	./.	./.	./.	./.
chr2	107055462	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:164,36:32:200:0.180:2	./.	./.	./.	./.	./.	./.
chr2	107055554	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:168,26:31:194:0.134:2	./.	./.	0/1:156,40:31:196:0.204:2	./.	./.	./.
chr2	107055633	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:161,28:31:189:0.148:2	./.	./.	0/1:143,34:32:177:0.192:2	./.	./.	./.
chr2	107073469	rs76857936	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:140,49:34:189:0.259:2	0/1:135,62:33:197:0.315:2	0/1:34,18:31:52:0.346:2	0/1:156,39:33:195:0.200:2	0/1:152,47:33:199:0.236:2	0/1:38,151:32:189:0.799:2	0/1:145,53:33:198:0.268:2	0/1:11,184:32:195:0.944:2	0/1:19,168:34:187:0.898:2	./.	0/1:147,49:33:196:0.250:2
chr2	107073489	rs199932968	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:170,20:30:190:0.105:2	0/1:190,10:31:200:0.050:2	./.	0/1:189,9:33:198:0.045:2	0/1:185,9:31:194:0.046:2	0/1:172,14:30:188:0.075:2	0/1:188,7:32:195:0.036:2	0/1:181,7:30:188:0.037:2	0/1:188,10:32:198:0.051:2	0/1:184,11:29:195:0.056:2	./.
chr2	107073501	rs72627454	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:143,52:32:195:0.267:2	0/1:141,51:32:192:0.266:2	0/1:32,22:30:54:0.407:2	0/1:154,42:31:196:0.214:2	0/1:148,44:30:192:0.229:2	0/1:35,146:30:181:0.807:2	0/1:139,52:30:191:0.272:2	0/1:16,154:31:170:0.906:2	0/1:18,153:32:171:0.895:2	./.	0/1:144,51:31:195:0.262:2
chr2	107074108	rs200571685	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,40:33:149:0.268:2
chr2	107084664	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,3:29:13:0.231:2	./.	./.	./.	./.	./.	0/1:15,5:30:20:0.250:2
chr2	107084739	rs6718521	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:37,35:32:72:0.486:2	0/1:36,17:32:53:0.321:2	./.	./.	0/1:45,12:32:57:0.211:2	./.	./.	0/1:1,54:32:55:0.982:2	0/1:3,60:33:63:0.952:2	./.	./.
chr2	107423188	rs1470591	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,66:33:67:0.985:2	0/1:0,32:33:32:1.00:2	0/1:3,7:32:10:0.700:2	0/1:33,39:33:72:0.542:2	0/1:36,45:32:81:0.556:2	0/1:0,97:31:97:1.00:2	0/1:35,48:32:83:0.578:2	./.	0/1:35,46:33:81:0.568:2	./.	0/1:46,59:33:105:0.562:2
chr2	107423193	rs34558933	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,45:32:86:0.523:2	./.	./.	./.	./.	./.	./.
chr2	107423395	rs1470590	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:33:42:1.00:2	0/1:0,50:32:51:1.00:2	0/1:1,6:31:7:0.857:2	0/1:48,24:33:72:0.333:2	0/1:0,53:32:53:1.00:2	0/1:0,70:32:70:1.00:2	0/1:3,82:32:85:0.965:2	0/1:37,36:33:73:0.493:2	0/1:28,30:33:58:0.517:2	./.	0/1:28,26:34:54:0.481:2
chr2	107450525	rs12615112	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,3:31:14:0.214:2	0/1:85,61:30:146:0.418:2	./.	./.	./.	./.	./.	./.	./.
chr2	107450569	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:33:145:0.028:2	./.	./.
chr2	107450589	rs3796111	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,47:32:104:0.452:2	0/1:37,33:33:70:0.471:2	./.	./.	0/1:56,70:32:126:0.556:2	./.	./.	./.
chr2	107459974	rs3796110	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,39:31:62:0.629:2	./.	./.	0/1:39,33:32:72:0.458:2	./.	./.	./.
chr2	108443511	rs7576738	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:30:73:1.00:2	0/1:0,27:30:27:1.00:2	0/1:7,5:32:12:0.417:2	0/1:34,40:30:74:0.541:2	0/1:0,46:30:46:1.00:2	0/1:0,67:31:67:1.00:2	0/1:11,7:30:18:0.389:2	0/1:46,32:30:78:0.410:2	0/1:44,12:31:56:0.214:2	0/1:1,63:29:64:0.984:2	0/1:16,5:28:21:0.238:2
chr2	108454739	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,33:33:165:0.200:2
chr2	108471045	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.	./.
chr2	108473216	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:167,26:31:193:0.135:2	./.	./.	0/1:171,27:32:198:0.136:2	./.	./.	./.
chr2	108473295	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:167,31:30:198:0.157:2	./.	./.	0/1:162,34:31:196:0.173:2	./.	./.	./.
chr2	108473387	rs371792535	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:146,30:31:176:0.170:2	./.	./.	./.	./.	./.	./.
chr2	108475580	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:32:198:0.025:2	./.	./.	./.	./.
chr2	108475928	rs143215949	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,6:32:34:0.176:2	./.	0/1:155,39:32:194:0.201:2	./.	0/1:156,40:32:196:0.204:2	./.	./.	./.	0/1:141,50:33:191:0.262:2
chr2	108475958	rs142985549	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,148:33:150:0.987:2	0/1:0,73:32:73:1.00:2	0/1:21,14:33:35:0.400:2	0/1:77,93:33:170:0.547:2	0/1:54,114:32:168:0.679:2	0/1:8,137:32:145:0.945:2	0/1:105,60:33:165:0.364:2	0/1:82,74:33:156:0.474:2	0/1:94,87:33:181:0.481:2	0/1:5,155:32:160:0.969:2	0/1:114,47:33:161:0.292:2
chr2	108476284	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:34:199:0.020:2	./.	./.
chr2	108476300	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,5:30:191:0.026:2	./.	./.
chr2	108478078	rs200047014	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,5:31:196:0.026:2	./.	./.	./.
chr2	108479165	rs200602090	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,10:32:42:0.238:2	0/1:21,9:31:30:0.300:2	./.	0/1:140,15:33:155:0.097:2	0/1:27,15:31:42:0.357:2	0/1:60,7:29:67:0.104:2	0/1:119,7:32:126:0.056:2	0/1:186,7:32:193:0.036:2	0/1:166,18:33:184:0.098:2	0/1:49,17:32:66:0.258:2	./.
chr2	108479275	rs201818344	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,9:29:70:0.129:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	108479432	rs200501106	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,126:31:182:0.692:2	0/1:54,140:31:194:0.722:2	0/1:44,20:31:64:0.313:2	0/1:147,50:32:197:0.254:2	0/1:73,121:30:194:0.624:2	0/1:67,126:30:193:0.653:2	0/1:146,47:31:193:0.244:2	0/1:154,42:32:196:0.214:2	0/1:140,50:32:190:0.263:2	0/1:76,120:31:196:0.612:2	0/1:140,54:31:194:0.278:2
chr2	108479454	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:29:195:0.026:2	./.	./.	./.	./.
chr2	108479465	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,7:32:195:0.036:2	./.	./.	./.	./.
chr2	108479471	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:182,4:32:187:0.022:2	./.	./.	./.	./.	./.	./.
chr2	108479477	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:178,4:32:182:0.022:2	./.	./.	./.	./.	./.	./.
chr2	108479487	rs199689341	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,112:32:193:0.580:2	0/1:91,92:32:184:0.503:2	0/1:58,16:32:76:0.216:2	0/1:150,47:31:197:0.239:2	0/1:90,79:32:169:0.467:2	0/1:98,97:31:196:0.497:2	0/1:136,34:32:170:0.200:2	0/1:155,39:32:194:0.201:2	0/1:147,50:33:197:0.254:2	0/1:102,91:32:193:0.472:2	0/1:140,54:32:194:0.278:2
chr2	108487178	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,6:34:81:0.074:2	./.	0/1:117,4:35:121:0.033:2	./.	0/1:148,5:34:153:0.033:2
chr2	108487266	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:181,12:32:193:0.062:2	0/1:165,8:33:173:0.046:2	./.	./.	./.	./.	0/1:194,5:33:199:0.025:2	./.	./.	0/1:188,7:33:195:0.036:2	./.
chr2	108487330	rs148409227	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,101:32:192:0.526:2	0/1:66,123:32:189:0.651:2	0/1:108,41:32:149:0.275:2	0/1:144,51:33:195:0.262:2	0/1:92,99:32:191:0.518:2	0/1:79,114:32:193:0.591:2	0/1:173,23:32:196:0.117:2	0/1:144,51:33:195:0.262:2	0/1:147,49:33:196:0.250:2	0/1:102,91:32:193:0.472:2	0/1:126,60:33:186:0.323:2
chr2	108487463	rs200660520	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,22:33:116:0.190:2	./.	./.	./.	./.	./.	./.	./.
chr2	108487685	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,3:32:28:0.107:2	./.	./.	./.	./.	./.	./.
chr2	108487826	rs62150212	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:31:5:1.00:2	./.	./.	./.	0/1:2,3:30:5:0.600:2	0/1:0,3:30:3:1.00:2	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.
chr2	108487829	rs141407602	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:33:5:1.00:2	./.	./.	./.	./.	0/1:0,3:33:3:1.00:2	./.	./.	./.	0/1:0,3:34:3:1.00:2	./.
chr2	108487877	rs199986270	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:28:4:0.750:2	./.	./.	./.	./.	./.	./.	./.
chr2	108488219	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:35:197:0.020:2	./.	./.	./.
chr2	108488317	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,4:33:196:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr2	108488742	rs147825872	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,57:31:79:0.722:2	0/1:17,35:31:52:0.673:2	0/1:4,3:30:7:0.429:2	0/1:37,27:31:64:0.422:2	0/1:36,23:30:59:0.390:2	0/1:39,16:30:55:0.291:2	0/1:28,11:28:39:0.282:2	0/1:36,19:31:55:0.345:2	0/1:25,21:32:46:0.457:2	0/1:12,44:32:56:0.786:2	./.
chr2	108489066	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:161,21:32:182:0.115:2	0/1:79,9:33:88:0.102:2	./.	./.	0/1:87,10:33:97:0.103:2	./.	./.	0/1:91,11:31:102:0.108:2	./.	./.	./.
chr2	108489362	rs200040211	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:17,4:28:21:0.190:2	./.	./.	./.	./.	./.	0/1:9,4:31:13:0.308:2	./.	./.	./.	./.
chr2	108496435	rs832352	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,153:32:193:0.793:2	0/1:17,137:32:154:0.890:2	0/1:10,12:29:22:0.545:2	0/1:117,82:31:199:0.412:2	0/1:47,135:31:182:0.742:2	0/1:44,154:30:198:0.778:2	0/1:109,45:30:154:0.292:2	0/1:135,64:31:199:0.322:2	0/1:121,77:32:198:0.389:2	0/1:44,149:31:193:0.772:2	0/1:127,69:32:196:0.352:2
chr2	108496438	rs201885175	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:186,11:30:197:0.056:2	0/1:160,8:31:168:0.048:2	./.	./.	0/1:178,12:29:191:0.063:2	./.	./.	0/1:186,13:29:199:0.065:2	./.	0/1:176,20:29:196:0.102:2	0/1:181,14:31:195:0.072:2
chr2	108496503	rs202136029	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2	0/1:192,4:34:196:0.020:2	0/1:190,8:34:198:0.040:2	./.	0/1:188,5:34:193:0.026:2	./.
chr2	108496525	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:113,4:31:117:0.034:2	0/1:192,5:32:197:0.025:2	0/1:194,6:30:200:0.030:2	0/1:192,5:33:197:0.025:2	0/1:195,4:32:199:0.020:2	0/1:193,5:30:198:0.025:2	./.	./.	./.
chr2	108499177	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:29:195:0.026:2	./.	./.	./.
chr2	108507177	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,5:30:176:0.028:2	./.	0/1:168,11:31:179:0.061:2	./.	./.	./.
chr2	108507185	rs369515710	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:32:179:0.022:2	0/1:179,7:33:186:0.038:2	0/1:169,10:33:179:0.056:2	./.	./.	./.
chr2	108507211	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,7:32:179:0.039:2	./.	0/1:164,10:31:175:0.057:2	./.	./.	./.
chr2	108863650	rs9646947	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:33:6:0.667:2	./.	./.	./.	0/1:18,15:32:33:0.455:2	0/1:32,32:32:64:0.500:2	0/1:29,29:32:58:0.500:2	0/1:32,25:32:57:0.439:2	0/1:45,36:30:81:0.444:2
chr2	108863728	rs114486672	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:31:13:0.308:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	108863767	rs9308806	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:32:10:1.00:2	0/1:74,64:33:138:0.464:2	0/1:39,39:32:78:0.500:2	0/1:0,93:31:93:1.00:2	0/1:44,45:31:89:0.506:2	0/1:0,110:33:111:1.00:2	0/1:80,78:33:158:0.494:2	0/1:52,63:32:115:0.548:2	0/1:104,76:33:180:0.422:2
chr2	108875198	rs2219078	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,9:33:17:0.529:2	0/1:52,53:33:105:0.505:2	0/1:40,31:32:71:0.437:2	./.	./.	0/1:69,32:33:101:0.317:2	./.	./.	./.
chr2	108875244	rs6722745	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,4:28:11:0.364:2	0/1:36,30:29:66:0.455:2	0/1:19,22:27:41:0.537:2	0/1:39,49:28:88:0.557:2	./.	0/1:51,18:28:69:0.261:2	./.	./.	./.
chr2	108910751	rs17036058	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,34:30:71:0.479:2	./.	./.	./.	./.	./.	./.
chr2	108922036	rs17036104	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,53:30:97:0.546:2
chr2	108994808	rs1402467	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,55:32:55:1.00:2	0/1:1,50:32:51:0.980:2	./.	0/1:36,32:33:68:0.471:2	0/1:28,22:31:50:0.440:2	./.	0/1:26,40:33:66:0.606:2	0/1:2,83:32:85:0.976:2	./.	./.	0/1:41,49:34:90:0.544:2
chr2	109099572	rs2718698	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:33:37:1.00:2	0/1:1,34:32:35:0.971:2	0/1:0,3:32:3:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,62:33:62:1.00:2	0/1:0,53:32:53:1.00:2	0/1:1,70:32:71:0.986:2
chr2	109106381	rs12104502	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,67:33:121:0.554:2	0/1:34,28:33:62:0.452:2	0/1:0,5:33:5:1.00:2	0/1:101,69:33:170:0.406:2	0/1:73,47:32:120:0.392:2	0/1:76,47:32:123:0.382:2	0/1:52,48:33:100:0.480:2	0/1:83,51:33:134:0.381:2	0/1:90,65:34:155:0.419:2	0/1:65,54:32:120:0.454:2	./.
chr2	109113437	.	T	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:179,20:32:199:0.101:2	0/1:123,9:32:132:0.068:2	./.	0/1:172,12:32:184:0.065:2	0/1:121,13:31:134:0.097:2	0/1:173,13:31:186:0.070:2	0/1:96,10:32:107:0.094:2	0/1:144,15:32:159:0.094:2	0/1:180,8:34:188:0.043:2	0/1:179,16:32:195:0.082:2	0/1:190,9:33:199:0.045:2
chr2	109113440	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:188,8:28:196:0.041:2	./.	./.	./.	0/1:120,16:29:136:0.118:2	./.	0/1:102,5:31:107:0.047:2	0/1:152,8:30:160:0.050:2	./.	0/1:187,11:31:199:0.056:2	0/1:190,9:29:199:0.045:2
chr2	109113454	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:134,6:30:140:0.043:2	0/1:195,4:32:199:0.020:2	0/1:106,7:31:113:0.062:2	./.	./.	./.	./.
chr2	109113479	.	A	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:187,5:34:192:0.026:2	0/1:188,7:32:195:0.036:2	./.	0/1:187,6:35:193:0.031:2	0/1:151,11:34:162:0.068:2	0/1:190,4:33:194:0.021:2	./.	./.	0/1:182,7:30:189:0.037:2	0/1:191,4:34:195:0.021:2	0/1:187,5:33:192:0.026:2
chr2	109113483	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:33:192:0.021:2	./.	./.	./.
chr2	109124024	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,11:28:193:0.057:2	0/1:143,7:30:150:0.047:2	./.	./.	./.	./.
chr2	109124064	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:178,6:29:184:0.033:2	./.	0/1:179,9:29:188:0.048:2	0/1:182,9:28:191:0.047:2	./.	./.	./.	./.
chr2	109124073	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:175,4:32:179:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr2	109150984	rs143715745	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:25:8:0.500:2	./.	./.	./.
chr2	109276099	rs74632558	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:136,56:33:192:0.292:2	0/1:118,73:31:191:0.382:2	0/1:63,47:31:110:0.427:2	0/1:92,101:31:193:0.523:2	0/1:101,94:31:195:0.482:2	./.	./.	0/1:158,36:31:194:0.186:2	./.	0/1:105,92:32:197:0.467:2	./.
chr2	109276178	rs201135021	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:133,55:32:188:0.293:2	0/1:122,69:32:191:0.361:2	0/1:94,75:31:169:0.444:2	0/1:113,83:32:196:0.423:2	0/1:107,85:32:192:0.443:2	0/1:193,4:32:197:0.020:2	0/1:182,8:32:190:0.042:2	0/1:100,96:32:196:0.490:2	./.	0/1:118,74:33:192:0.385:2	./.
chr2	109276221	rs142370461	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,58:32:196:0.296:2	./.	./.
chr2	109293130	rs115305258	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,7:31:136:0.051:2	0/1:81,5:28:86:0.058:2	./.	./.	./.	./.	./.	./.	0/1:179,7:31:186:0.038:2	./.	./.
chr2	109297236	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:179,10:32:189:0.053:2	./.	./.	0/1:178,15:31:193:0.078:2	0/1:184,12:32:196:0.061:2	0/1:164,27:32:191:0.141:2	./.	0/1:166,21:32:187:0.112:2	./.	0/1:157,27:32:184:0.147:2	./.
chr2	109365570	rs200373569	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:171,19:32:191:0.100:2	./.	./.	./.	./.	./.	./.
chr2	109369479	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:185,5:30:190:0.026:2	./.	0/1:192,5:32:197:0.025:2	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	0/1:190,4:32:195:0.021:2
chr2	109369485	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:188,5:28:193:0.026:2	./.	0/1:192,5:31:197:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr2	109371388	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:169,5:32:174:0.029:2	./.	./.	./.	./.	./.	./.
chr2	109371399	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.	./.	./.
chr2	109371659	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:32:186:0.022:2	./.	./.	0/1:188,5:33:193:0.026:2	./.
chr2	109371685	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,7:30:198:0.035:2	0/1:180,7:30:188:0.037:2	./.	./.	./.	./.
chr2	109374952	rs826549	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:74,70:30:144:0.486:2	0/1:38,45:30:83:0.542:2	./.	./.	0/1:99,49:30:148:0.331:2	./.	./.	./.	0/1:85,75:31:160:0.469:2	0/1:73,48:30:121:0.397:2	0/1:78,78:30:156:0.500:2
chr2	109381438	rs61748149	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:48,47:32:95:0.495:2	0/1:28,27:32:55:0.491:2	./.	./.	0/1:37,22:31:59:0.373:2	./.	./.	./.	./.	./.	0/1:61,50:33:111:0.450:2
chr2	109381993	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,7:32:196:0.036:2	./.	./.	./.
chr2	109382170	.	A	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:184,11:33:195:0.056:2	0/1:186,9:31:195:0.046:2	./.	0/1:189,5:34:194:0.026:2	0/1:176,16:32:192:0.083:2	0/1:186,8:28:194:0.041:2	./.	./.	0/1:189,5:32:194:0.026:2	0/1:182,9:31:191:0.047:2	./.
chr2	109382638	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:32:102:0.040:2	./.	./.	./.	./.
chr2	109382731	rs2556259	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:186,7:32:195:0.036:2	./.	./.	./.	./.	./.	./.
chr2	109382751	rs2912700	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:186,8:33:194:0.041:2	0/1:194,5:32:199:0.025:2	./.	0/1:195,4:33:199:0.020:2	0/1:182,9:33:191:0.047:2	./.	./.	./.	./.	0/1:191,5:34:196:0.026:2	0/1:188,5:34:193:0.026:2
chr2	109382790	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	109382843	rs2912701	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:188,6:30:194:0.031:2	./.	./.	./.	./.	./.	./.
chr2	109382940	rs2919158	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:111,5:29:116:0.043:2	./.	./.	./.	./.	./.	./.
chr2	109383772	rs2918641	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,6:30:194:0.031:2	0/1:150,5:33:155:0.032:2	./.	./.	0/1:188,4:32:192:0.021:2	./.
chr2	109383777	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,5:32:146:0.034:2	./.	./.	./.	./.
chr2	109383866	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,4:32:152:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr2	109384083	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,63:32:179:0.352:2
chr2	109384167	rs200157805	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:50,15:31:65:0.231:2	0/1:40,7:31:47:0.149:2	./.	./.	0/1:30,5:31:35:0.143:2	./.	./.	./.	./.	./.	./.
chr2	109384785	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,3:32:28:0.107:2	./.	./.	./.	./.	./.	./.
chr2	109389463	rs826580	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,91:32:91:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,100:33:100:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,129:32:129:1.00:2
chr2	109397795	rs199918785	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,100:32:197:0.508:2	./.	./.	./.	./.	./.
chr2	109408159	rs35794776	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:17,14:33:31:0.452:2	0/1:13,4:32:17:0.235:2	./.	./.	0/1:24,15:30:39:0.385:2	./.	./.	./.	./.	./.	0/1:28,17:32:45:0.378:2
chr2	109408208	rs6740879	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:8,6:32:14:0.429:2	./.	./.	./.	0/1:12,6:32:18:0.333:2	./.	./.	./.	0/1:5,11:32:16:0.688:2	0/1:10,9:31:19:0.474:2	0/1:13,10:32:23:0.435:2
chr2	109411147	rs13424880	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,19:33:45:0.422:2	./.	./.
chr2	109429146	rs975597	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,58:32:103:0.563:2	0/1:30,28:32:58:0.483:2	0/1:0,14:31:14:1.00:2	0/1:0,89:32:89:1.00:2	0/1:29,34:30:63:0.540:2	0/1:2,101:31:103:0.981:2	0/1:0,60:31:60:1.00:2	0/1:0,107:31:107:1.00:2	0/1:58,73:32:131:0.557:2	0/1:47,45:32:92:0.489:2	0/1:66,67:32:133:0.504:2
chr2	109513654	rs12623957	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,25:32:49:0.510:2	0/1:19,12:31:31:0.387:2	0/1:0,10:31:10:1.00:2	0/1:2,69:31:71:0.972:2	0/1:47,36:31:83:0.434:2	0/1:1,65:31:66:0.985:2	0/1:0,65:31:65:1.00:2	0/1:0,82:31:83:1.00:2	0/1:52,36:32:88:0.409:2	0/1:0,71:32:71:1.00:2	0/1:24,26:31:50:0.520:2
chr2	109526969	rs260632	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,101:33:101:1.00:2	0/1:0,63:32:63:1.00:2	0/1:1,10:31:11:0.909:2	0/1:0,126:33:126:1.00:2	0/1:1,117:32:118:0.992:2	0/1:0,143:32:144:1.00:2	0/1:0,149:32:149:1.00:2	0/1:0,147:33:147:1.00:2	0/1:74,77:34:151:0.510:2	0/1:0,123:33:123:1.00:2	0/1:0,157:33:157:1.00:2
chr2	109527373	rs260630	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,114:32:114:1.00:2	0/1:1,56:33:57:0.982:2	0/1:0,17:32:17:1.00:2	0/1:1,138:32:139:0.993:2	0/1:1,149:32:150:0.993:2	0/1:0,155:32:155:1.00:2	0/1:0,157:32:157:1.00:2	0/1:0,159:32:159:1.00:2	0/1:95,45:32:140:0.321:2	0/1:0,104:32:104:1.00:2	0/1:0,134:32:134:1.00:2
chr2	109539913	rs748225	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:27,18:32:45:0.400:2	0/1:12,12:31:24:0.500:2	./.	./.	0/1:31,32:31:63:0.508:2	./.	./.	./.	./.	./.	0/1:28,18:31:46:0.391:2
chr2	110015057	rs201743885	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,12:34:33:0.364:2
chr2	110015138	rs117154967	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,39:31:76:0.513:2
chr2	110015309	rs10181644	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,33:31:82:0.402:2
chr2	110048972	rs115992510	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,28:32:28:1.00:2
chr2	110259164	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,4:32:33:0.121:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	110310707	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:35:169:0.024:2	./.	./.
chr2	110322067	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,3:32:29:0.103:2	./.	./.	./.
chr2	110325481	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:119,4:31:123:0.033:2	./.	./.	./.	./.	./.	./.
chr2	110325497	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,4:31:79:0.051:2	./.	./.	./.	./.	./.	./.
chr2	110373197	rs1560884	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,15:31:34:0.441:2	0/1:11,10:33:21:0.476:2	./.	./.	./.	0/1:21,16:31:37:0.432:2	0/1:12,7:32:19:0.368:2	./.	./.	0/1:11,10:32:21:0.476:2	0/1:16,6:31:22:0.273:2
chr2	110373805	rs4953847	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:65,60:32:125:0.480:2	0/1:28,27:32:55:0.491:2	0/1:5,4:34:9:0.444:2	./.	./.	./.	./.	./.	./.	0/1:48,79:32:127:0.622:2	./.
chr2	110373849	rs4953848	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:54,49:32:105:0.476:2	0/1:29,24:32:53:0.453:2	./.	./.	./.	./.	./.	./.	./.	0/1:51,54:32:105:0.514:2	./.
chr2	110373919	rs4953849	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:43,45:32:88:0.511:2	0/1:32,22:32:54:0.407:2	./.	./.	./.	./.	./.	./.	./.	0/1:42,28:33:70:0.400:2	./.
chr2	110373938	rs4953850	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,84:32:84:1.00:2	0/1:0,45:32:45:1.00:2	0/1:4,5:32:9:0.556:2	./.	./.	0/1:45,41:32:86:0.477:2	0/1:24,27:32:51:0.529:2	./.	./.	0/1:0,50:33:50:1.00:2	0/1:37,43:33:80:0.538:2
chr2	110374215	rs6726252	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,30:32:30:1.00:2	0/1:4,26:33:30:0.867:2	0/1:1,3:34:4:0.750:2	./.	./.	0/1:12,12:32:24:0.500:2	0/1:10,6:34:16:0.375:2	./.	./.	0/1:0,27:33:27:1.00:2	0/1:28,18:33:46:0.391:2
chr2	110375025	rs6594049	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,56:32:56:1.00:2	0/1:1,31:32:32:0.969:2	0/1:4,5:31:9:0.556:2	./.	./.	0/1:33,25:31:58:0.431:2	0/1:18,16:32:34:0.471:2	./.	./.	0/1:0,41:31:41:1.00:2	0/1:55,37:31:92:0.402:2
chr2	110375151	rs6594050	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:26,15:32:41:0.366:2	0/1:12,13:33:25:0.520:2	0/1:3,4:31:7:0.571:2	./.	./.	./.	./.	./.	./.	0/1:21,16:31:37:0.432:2	./.
chr2	110376019	rs1046645	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,15:30:37:0.405:2	0/1:13,9:30:22:0.409:2	./.	./.	./.	0/1:42,24:29:66:0.364:2	0/1:16,19:30:35:0.543:2	./.	./.	0/1:22,15:30:37:0.405:2	0/1:52,34:30:86:0.395:2
chr2	110561657	.	C	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:188,8:31:196:0.041:2	0/1:171,10:32:181:0.055:2	./.	0/1:193,4:32:197:0.020:2	0/1:193,5:32:198:0.025:2	0/1:191,8:32:199:0.040:2	./.	0/1:193,4:32:197:0.020:2	./.	0/1:188,12:32:200:0.060:2	0/1:190,5:32:196:0.026:2
chr2	110579508	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:173,24:30:197:0.122:2	./.	./.	./.	./.	./.	./.
chr2	110581913	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:163,29:32:192:0.151:2	0/1:163,36:32:199:0.181:2	0/1:101,16:32:117:0.137:2	0/1:180,15:30:195:0.077:2	0/1:155,44:31:199:0.221:2	0/1:160,37:31:197:0.188:2	0/1:166,31:32:197:0.157:2	0/1:168,30:32:198:0.152:2	0/1:152,44:32:197:0.224:2	0/1:168,30:32:198:0.152:2	0/1:161,35:33:197:0.179:2
chr2	110581923	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	0/1:191,5:32:196:0.026:2	./.
chr2	110581950	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,5:31:186:0.027:2	./.
chr2	110585407	rs202214345	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:194,4:33:198:0.020:2	0/1:159,4:32:163:0.025:2	./.	./.	./.	./.	0/1:195,4:34:199:0.020:2	./.
chr2	110585506	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:30:88:0.045:2	./.	0/1:91,12:32:103:0.117:2	./.	0/1:116,11:32:127:0.087:2
chr2	110585652	.	A	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:164,25:33:190:0.132:2	0/1:177,20:32:197:0.102:2	0/1:43,4:31:47:0.085:2	0/1:181,13:32:194:0.067:2	./.	0/1:142,48:33:190:0.253:2	0/1:164,28:32:192:0.146:2	0/1:175,17:33:192:0.089:2	0/1:127,62:33:189:0.328:2	./.	0/1:179,16:32:196:0.082:2
chr2	110593413	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:31:88:0.045:2	./.	./.	./.	./.
chr2	110593480	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:169,23:31:192:0.120:2	0/1:124,8:32:132:0.061:2	./.	0/1:185,8:32:193:0.041:2	./.	./.	./.	./.	./.	0/1:139,14:31:153:0.092:2	./.
chr2	110593506	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,15:30:196:0.077:2	./.	./.	./.
chr2	110593536	.	C	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:169,22:30:192:0.115:2	0/1:180,16:31:196:0.082:2	0/1:52,9:30:61:0.148:2	0/1:189,8:30:197:0.041:2	0/1:157,40:29:197:0.203:2	./.	./.	./.	0/1:187,8:31:195:0.041:2	0/1:161,27:29:188:0.144:2	./.
chr2	110593694	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,22:30:122:0.180:2	./.	./.	./.	./.
chr2	110593829	.	C	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,16:29:61:0.262:2	0/1:39,9:31:48:0.188:2	./.	0/1:45,14:30:59:0.237:2	./.	0/1:43,7:29:50:0.140:2
chr2	110594061	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,7:32:26:0.269:2	0/1:27,4:33:31:0.129:2	./.	./.	./.	./.
chr2	110594454	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:179,13:32:192:0.068:2	0/1:191,6:32:197:0.030:2	./.	./.	0/1:192,5:31:197:0.025:2	./.	./.	0/1:185,13:32:198:0.066:2	./.	0/1:179,15:31:194:0.077:2	0/1:187,6:34:193:0.031:2
chr2	110594612	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,12:32:111:0.108:2	./.	./.	./.	./.
chr2	110594663	.	T	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:180,10:32:190:0.053:2	0/1:159,7:32:166:0.042:2	./.	./.	./.	./.	./.	0/1:155,5:28:160:0.031:2	./.	0/1:140,8:31:148:0.054:2	0/1:188,4:33:192:0.021:2
chr2	110595363	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,5:30:192:0.026:2
chr2	110595406	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:32:108:0.037:2	./.	./.	0/1:100,6:31:106:0.057:2	./.	./.
chr2	110613439	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:35:188:0.021:2	./.	./.
chr2	110613453	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:187,4:34:191:0.021:2	./.	./.	./.	./.	./.	0/1:179,9:31:188:0.048:2	0/1:181,4:33:185:0.022:2
chr2	110660868	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:182,5:32:187:0.027:2	0/1:188,5:31:193:0.026:2	./.	0/1:175,19:29:194:0.098:2	0/1:178,20:30:198:0.101:2	./.	./.	0/1:150,9:31:159:0.057:2	./.	0/1:164,13:30:177:0.073:2	./.
chr2	110660947	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:184,7:32:191:0.037:2	./.	0/1:184,12:31:197:0.061:2	0/1:182,15:30:197:0.076:2	0/1:109,85:32:194:0.438:2	0/1:109,83:33:192:0.432:2	0/1:178,15:33:193:0.078:2	0/1:67,122:32:189:0.646:2	0/1:186,7:33:193:0.036:2	0/1:149,34:33:183:0.186:2
chr2	110661407	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,12:30:26:0.462:2	./.
chr2	110661411	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:31,5:30:36:0.139:2	./.	./.	0/1:22,3:30:25:0.120:2	./.	./.	./.	./.	./.	./.	./.
chr2	110663460	rs200907235	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,81:31:195:0.415:2	0/1:112,85:32:197:0.431:2	./.	0/1:92,102:33:194:0.526:2	./.	0/1:152,40:32:192:0.208:2
chr2	110663465	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:183,10:30:193:0.052:2	0/1:176,10:32:186:0.054:2	0/1:124,6:32:130:0.046:2	0/1:184,13:32:197:0.066:2	0/1:187,12:33:199:0.060:2	./.	./.	0/1:146,52:31:198:0.263:2	0/1:184,9:32:193:0.047:2	0/1:172,20:32:192:0.104:2	./.
chr2	110843328	rs200995754	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,16:31:65:0.246:2	./.	./.	./.	./.	./.	./.	./.
chr2	110849222	rs141095578	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,13:31:101:0.129:2	./.	./.	./.	./.	./.	./.	./.
chr2	110873353	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	110873355	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	110922703	rs11675767	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,101:32:101:1.00:2	0/1:0,59:32:60:1.00:2	0/1:7,11:32:18:0.611:2	./.	0/1:0,85:31:85:1.00:2	./.	./.	./.	./.	0/1:71,46:31:117:0.393:2	0/1:0,110:32:110:1.00:2
chr2	110959026	rs33958626	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,10:32:32:0.313:2	./.	./.	./.	./.
chr2	111223196	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:180,15:32:195:0.077:2	0/1:179,17:31:196:0.087:2	./.	0/1:172,24:31:196:0.122:2	0/1:169,28:32:197:0.142:2	./.	./.	0/1:136,59:31:195:0.303:2	0/1:173,17:33:190:0.089:2	0/1:149,45:32:194:0.232:2	./.
chr2	111223201	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,72:32:194:0.371:2	0/1:116,78:32:194:0.402:2	./.	0/1:84,107:33:191:0.560:2	./.	0/1:152,37:33:189:0.196:2
chr2	111225714	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:90,4:32:94:0.043:2	0/1:189,7:32:196:0.036:2	./.	0/1:107,86:31:193:0.446:2	0/1:113,83:31:196:0.423:2	0/1:168,20:31:188:0.106:2	0/1:83,109:32:192:0.568:2	0/1:178,8:31:186:0.043:2	0/1:141,53:32:194:0.273:2
chr2	111225793	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:171,4:32:175:0.023:2	./.	./.	0/1:153,8:31:161:0.050:2	0/1:124,13:31:137:0.095:2	./.	./.	0/1:150,6:29:156:0.038:2	./.	0/1:160,7:31:167:0.042:2	./.
chr2	111273208	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2	./.	./.	./.	./.	./.	0/1:179,5:31:184:0.027:2
chr2	111291226	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:153,4:32:157:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr2	111291480	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,3:33:32:0.094:2	./.	./.	./.	./.	./.
chr2	111291998	.	A	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:189,8:32:197:0.041:2	0/1:137,4:32:141:0.028:2	./.	./.	0/1:108,4:32:112:0.036:2	./.	./.	./.	./.	0/1:167,14:30:182:0.077:2	0/1:189,9:32:198:0.045:2
chr2	111292049	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,24:31:158:0.152:2	./.	./.	./.	./.
chr2	111292207	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:184,12:32:196:0.061:2	0/1:166,7:28:173:0.040:2	./.	./.	0/1:154,6:32:160:0.038:2	./.	./.	0/1:163,13:32:176:0.074:2	./.	0/1:152,20:31:172:0.116:2	0/1:176,14:32:190:0.074:2
chr2	111292317	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,5:26:57:0.089:2	./.	./.	./.	./.	./.	./.	./.	0/1:59,5:28:64:0.078:2	0/1:87,5:25:92:0.054:2
chr2	111292600	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,4:31:29:0.138:2	./.	./.	./.	./.	./.	./.
chr2	111292832	.	G	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,16:28:56:0.286:2	0/1:41,18:30:59:0.305:2	./.	0/1:56,16:30:72:0.222:2	./.	0/1:64,13:31:77:0.169:2
chr2	111292967	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,20:31:140:0.143:2	./.	./.	./.	./.
chr2	111293125	.	G	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:156,24:30:182:0.133:2	0/1:124,20:31:144:0.139:2	./.	0/1:177,10:30:188:0.053:2	0/1:131,24:30:155:0.155:2	./.	0/1:188,9:30:198:0.046:2	./.	./.	0/1:141,37:31:178:0.208:2	0/1:180,12:30:192:0.063:2
chr2	111293155	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,15:30:182:0.082:2	./.	./.	./.
chr2	111293181	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:154,16:31:170:0.094:2	0/1:103,10:31:113:0.088:2	./.	0/1:140,10:30:150:0.067:2	./.	./.	./.	./.	./.	0/1:123,14:32:137:0.102:2	./.
chr2	111301009	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:157,31:32:188:0.165:2	0/1:112,23:32:135:0.170:2	0/1:35,9:33:44:0.205:2	0/1:155,33:32:188:0.176:2	./.	0/1:131,56:31:187:0.299:2	0/1:104,22:32:126:0.175:2	0/1:138,27:32:165:0.164:2	0/1:95,89:33:184:0.484:2	./.	0/1:156,31:29:188:0.166:2
chr2	111301155	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,11:30:132:0.083:2	0/1:72,10:29:82:0.122:2	./.	0/1:93,27:32:120:0.225:2	./.	0/1:158,14:32:172:0.081:2
chr2	111301182	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,5:28:88:0.057:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	111301254	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,7:32:196:0.036:2	./.
chr2	111304132	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:199:0.020:2	./.
chr2	111304144	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:33:192:0.021:2	./.
chr2	111304738	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:31:194:0.026:2	./.	./.	./.
chr2	111304748	rs199635657	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:158,33:32:191:0.173:2	0/1:140,48:32:188:0.255:2	0/1:119,38:32:157:0.242:2	0/1:176,19:31:195:0.097:2	0/1:159,39:32:198:0.197:2	0/1:162,33:31:195:0.169:2	0/1:160,37:31:197:0.188:2	0/1:145,49:31:194:0.253:2	0/1:161,34:32:195:0.174:2	0/1:164,29:32:193:0.150:2	0/1:156,42:32:198:0.212:2
chr2	111307050	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:36:198:0.020:2	./.	./.	./.
chr2	111307153	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:164,34:30:198:0.172:2	./.	./.	./.	./.	./.	./.
chr2	111325004	.	G	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:182,12:33:194:0.062:2	0/1:185,12:32:197:0.061:2	./.	0/1:173,22:32:197:0.113:2	0/1:190,8:32:198:0.040:2	0/1:178,15:31:194:0.078:2	0/1:190,5:34:196:0.026:2	0/1:185,9:31:194:0.046:2	0/1:183,9:33:193:0.047:2	0/1:184,14:30:198:0.071:2	0/1:180,5:32:185:0.027:2
chr2	111559231	rs34466366	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,64:30:164:0.390:2
chr2	111562875	rs77331476	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,39:31:79:0.494:2	./.	./.	./.	./.	./.
chr2	111598958	rs1554005	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,67:32:143:0.469:2
chr2	111691206	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:31:49:0.082:2	./.	./.	./.	./.
chr2	111744738	rs116596490	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:28:12:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	111806832	rs139395474	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,40:31:78:0.513:2	./.	./.	./.
chr2	111881389	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:32:176:0.023:2	./.	./.	./.
chr2	111899881	rs3761706	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,72:32:173:0.416:2	./.	./.
chr2	111899886	rs201667919	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,17:15:137:0.124:2
chr2	111907691	rs724710	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:66,38:30:104:0.365:2	0/1:29,24:30:53:0.453:2	./.	0/1:92,61:31:153:0.399:2	0/1:86,49:30:135:0.363:2	0/1:0,145:29:145:1.00:2	0/1:78,63:29:141:0.447:2	0/1:80,74:30:154:0.481:2	0/1:2,132:30:134:0.985:2	0/1:0,93:28:93:1.00:2	0/1:1,94:30:95:0.989:2
chr2	112524547	rs370526532	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:132,64:30:196:0.327:2	./.	./.	0/1:127,67:31:195:0.345:2	./.	./.	./.
chr2	112524600	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,10:32:189:0.053:2	0/1:181,10:32:191:0.052:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	112526866	rs137999262	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,171:33:196:0.872:2	./.	./.	0/1:128,68:33:196:0.347:2	./.	0/1:128,69:33:198:0.350:2	./.
chr2	112536264	rs76115652	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,191:33:191:1.00:2	0/1:0,145:32:146:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,191:32:191:1.00:2	0/1:0,140:31:140:1.00:2	0/1:0,115:31:115:1.00:2	./.	0/1:0,193:31:193:1.00:2	0/1:0,191:33:191:1.00:2	0/1:1,104:32:105:0.990:2	0/1:2,182:32:184:0.989:2
chr2	112539956	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,15:33:123:0.122:2	./.	./.	./.	./.	./.	./.
chr2	112542959	.	G	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:124,69:31:193:0.358:2	0/1:131,61:31:192:0.318:2	./.	./.	0/1:155,43:31:198:0.217:2	./.	0/1:160,32:30:192:0.167:2	./.	0/1:121,73:32:194:0.376:2	./.	0/1:146,40:31:186:0.215:2
chr2	112551673	rs200630962	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,5:31:6:0.833:2	./.	./.	./.	0/1:36,4:33:40:0.100:2	./.	./.
chr2	112552427	rs190739040	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,99:31:193:0.516:2	./.	./.	0/1:145,52:32:197:0.264:2	./.	0/1:147,49:32:197:0.250:2	./.
chr2	112560090	rs142711068	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:121,77:30:198:0.389:2	./.	./.	0/1:165,30:31:195:0.154:2	./.	0/1:149,37:31:186:0.199:2	./.
chr2	112561063	.	A	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:145,11:31:157:0.071:2	0/1:92,9:31:101:0.089:2	./.	./.	0/1:149,10:31:159:0.063:2	./.	0/1:141,14:30:155:0.090:2	./.	0/1:158,19:29:177:0.107:2	./.	0/1:167,12:32:179:0.067:2
chr2	112561389	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant7-variant8-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:55,14:31:69:0.203:2	./.	0/1:8,3:30:11:0.273:2	./.	0/1:76,17:30:93:0.183:2	./.	./.	./.	./.	./.	./.
chr2	112573100	.	A	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:55,26:28:82:0.321:2	0/1:30,11:30:41:0.268:2	./.	0/1:85,7:30:92:0.076:2	./.	0/1:98,17:30:115:0.148:2	./.	0/1:121,13:29:134:0.097:2	0/1:84,15:29:99:0.152:2	0/1:74,19:29:93:0.204:2	0/1:69,14:30:83:0.169:2
chr2	112573154	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:61,28:31:89:0.315:2	0/1:34,13:31:47:0.277:2	./.	./.	0/1:127,17:31:144:0.118:2	./.	0/1:127,17:30:144:0.118:2	./.	0/1:83,16:32:99:0.162:2	./.	0/1:94,14:31:108:0.130:2
chr2	112578833	rs199837741	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:27,3:33:30:0.100:2	./.	./.	./.	./.	0/1:74,4:32:78:0.051:2	./.	./.	./.	./.
chr2	112578912	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:39,4:31:43:0.093:2	./.	./.	./.	./.	0/1:182,8:30:190:0.042:2	./.	./.	./.	./.
chr2	112578915	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,9:31:189:0.048:2	./.	0/1:128,4:32:132:0.030:2	./.	./.
chr2	112578926	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:142,5:32:147:0.034:2	./.	./.	./.	./.	./.	./.
chr2	112588974	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:191,6:32:197:0.030:2	0/1:167,7:31:174:0.040:2	./.	./.	0/1:194,6:31:200:0.030:2	./.	0/1:186,7:32:193:0.036:2	./.	./.	./.	./.
chr2	112588975	rs147457004	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,73:32:196:0.372:2	./.
chr2	112590838	rs139503565	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,17:31:197:0.086:2	./.	./.	./.
chr2	112605302	rs4848197	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,65:33:67:0.970:2	0/1:2,36:32:38:0.947:2	./.	0/1:61,31:32:92:0.337:2	0/1:1,33:31:34:0.971:2	0/1:87,26:32:113:0.230:2	./.	0/1:0,64:31:64:1.00:2	0/1:88,25:33:113:0.221:2	0/1:0,47:32:47:1.00:2	0/1:98,34:32:132:0.258:2
chr2	112605429	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:31:85:0.047:2	./.	./.	./.	./.	./.
chr2	112605439	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:32:70:0.057:2	./.	./.	./.	./.	./.
chr2	112608423	rs147684628	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,33:33:164:0.201:2	./.	./.	./.	./.
chr2	112614266	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,7:31:98:0.071:2	./.	./.	./.	./.	./.	./.	./.
chr2	112614384	rs141604036	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,39:32:197:0.198:2	0/1:170,24:32:194:0.124:2
chr2	112614429	rs72936240	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:110,51:33:161:0.317:2	0/1:61,44:32:105:0.419:2	0/1:22,11:31:33:0.333:2	0/1:95,56:32:151:0.371:2	0/1:95,51:31:146:0.349:2	0/1:116,39:31:155:0.252:2	0/1:95,50:32:145:0.345:2	0/1:87,52:32:139:0.374:2	0/1:89,65:33:154:0.422:2	0/1:90,75:32:165:0.455:2	0/1:117,24:31:141:0.170:2
chr2	112615888	rs79100806	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:126,15:33:141:0.106:2	0/1:86,5:33:91:0.055:2	0/1:18,3:34:21:0.143:2	0/1:149,21:33:170:0.124:2	0/1:100,11:32:111:0.099:2	./.	0/1:95,5:34:100:0.050:2	0/1:188,8:33:196:0.041:2	0/1:172,16:34:188:0.085:2	0/1:138,20:31:158:0.127:2	0/1:186,11:32:197:0.056:2
chr2	112615933	rs72936244	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:131,50:32:181:0.276:2	0/1:100,25:31:125:0.200:2	0/1:16,10:33:26:0.385:2	0/1:146,48:31:194:0.247:2	0/1:117,40:31:157:0.255:2	0/1:177,17:32:194:0.088:2	0/1:105,30:32:135:0.222:2	0/1:156,29:32:185:0.157:2	0/1:154,40:33:194:0.206:2	0/1:147,46:32:193:0.238:2	0/1:164,21:32:185:0.114:2
chr2	112619981	rs201128090	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:123,44:32:167:0.263:2	0/1:76,23:32:99:0.232:2	0/1:18,4:30:22:0.182:2	0/1:159,30:32:189:0.159:2	0/1:109,13:31:122:0.107:2	0/1:128,38:32:166:0.229:2	0/1:98,28:32:126:0.222:2	0/1:158,40:31:198:0.202:2	0/1:160,36:33:196:0.184:2	0/1:135,10:32:145:0.069:2	0/1:178,21:31:199:0.106:2
chr2	112622513	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,5:32:150:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	112625615	.	C	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:183,9:32:193:0.047:2	0/1:174,19:32:193:0.098:2	./.	0/1:175,18:33:194:0.093:2	0/1:158,13:31:171:0.076:2	0/1:171,22:31:193:0.114:2	0/1:158,10:33:168:0.060:2	0/1:175,18:30:193:0.093:2	0/1:178,13:35:192:0.068:2	0/1:182,13:33:195:0.067:2	0/1:184,9:33:194:0.047:2
chr2	112625621	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,15:32:193:0.078:2	0/1:180,6:32:186:0.032:2	./.	./.	./.	./.
chr2	112625661	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:171,24:32:195:0.123:2	0/1:161,35:32:196:0.179:2	0/1:44,14:32:58:0.241:2	0/1:155,41:33:196:0.209:2	0/1:170,23:31:193:0.119:2	0/1:146,46:32:193:0.240:2	0/1:167,28:32:195:0.144:2	0/1:159,36:32:195:0.185:2	0/1:146,39:34:185:0.211:2	0/1:161,37:32:198:0.187:2	0/1:153,38:32:191:0.199:2
chr2	112636450	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,22:29:199:0.111:2	./.	./.	./.	./.
chr2	112656392	rs115821982	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.
chr2	112686988	rs13027171	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,103:32:185:0.557:2	0/1:53,61:32:114:0.535:2	./.	./.	./.	0/1:5,153:31:158:0.968:2	0/1:76,45:31:121:0.372:2	./.	0/1:108,89:32:197:0.452:2	./.	0/1:97,93:32:190:0.489:2
chr2	112740420	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,6:27:198:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr2	112751928	rs7604639	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:74,55:32:129:0.426:2	0/1:40,39:32:79:0.494:2	0/1:5,9:31:14:0.643:2	./.	./.	0/1:2,160:31:162:0.988:2	0/1:89,85:31:174:0.489:2	0/1:102,83:31:185:0.449:2	0/1:1,181:32:182:0.995:2	0/1:0,133:31:133:1.00:2	0/1:96,63:30:159:0.396:2
chr2	112754943	rs3811634	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,44:31:112:0.393:2	0/1:22,27:32:49:0.551:2	./.	./.	./.	0/1:2,82:31:84:0.976:2	0/1:51,17:31:68:0.250:2	./.	0/1:57,43:32:100:0.430:2	./.	0/1:45,48:32:93:0.516:2
chr2	112755001	rs2230515	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,32:31:78:0.410:2	0/1:18,24:32:42:0.571:2	./.	./.	./.	0/1:0,47:32:47:1.00:2	0/1:18,18:33:36:0.500:2	0/1:35,30:33:65:0.462:2	0/1:0,53:33:53:1.00:2	0/1:0,71:32:72:1.00:2	0/1:29,30:31:59:0.508:2
chr2	112765973	rs1131244	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,19:30:44:0.432:2	0/1:6,12:29:18:0.667:2	./.	./.	./.	0/1:1,45:30:46:0.978:2	0/1:30,19:29:49:0.388:2	0/1:33,26:28:60:0.441:2	0/1:0,43:30:43:1.00:2	0/1:0,25:29:25:1.00:2	0/1:27,22:29:49:0.449:2
chr2	112777022	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:32:191:0.021:2	./.
chr2	112786049	rs2230517	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,14:32:26:0.538:2	./.
chr2	112786357	rs10205793	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,22:31:52:0.423:2	./.
chr2	112922679	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,4:31:103:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr2	112939544	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr2	113007757	rs17781007	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,18:32:46:0.391:2	./.	./.	./.	./.	./.	0/1:23,26:32:49:0.531:2	./.
chr2	113067622	rs79245040	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,7:32:20:0.350:2	./.	./.	./.	./.	./.	./.	./.	0/1:95,66:31:161:0.410:2
chr2	113074806	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:32:38:0.105:2	./.	./.	./.	./.	./.
chr2	113082200	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,5:27:141:0.035:2	./.	./.	./.	./.
chr2	113089267	rs7601200	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,20:32:46:0.435:2	0/1:20,14:32:34:0.412:2	./.	0/1:23,24:31:47:0.511:2	0/1:9,15:31:24:0.625:2	./.	0/1:11,10:33:21:0.476:2	0/1:13,30:32:43:0.698:2	./.	0/1:0,41:32:41:1.00:2	0/1:28,28:31:56:0.500:2
chr2	113090047	rs4578863	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,5:28:9:0.556:2	./.	./.	0/1:9,10:29:19:0.526:2	0/1:6,6:28:12:0.500:2	./.	0/1:3,5:26:8:0.625:2	./.	./.	0/1:0,2:28:2:1.00:2	0/1:7,3:25:10:0.300:2
chr2	113145814	rs200737546	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:135,5:33:140:0.036:2	./.	./.	./.	./.	0/1:120,73:31:193:0.378:2	0/1:99,47:32:146:0.322:2	./.	0/1:122,72:33:194:0.371:2	./.	0/1:136,55:33:191:0.288:2
chr2	113145900	rs201473406	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:18,5:32:23:0.217:2	0/1:4,7:32:11:0.636:2	./.	0/1:14,6:33:20:0.300:2	./.	0/1:82,5:32:87:0.057:2	./.	0/1:7,4:31:11:0.364:2	./.	0/1:5,3:34:8:0.375:2	0/1:78,5:33:83:0.060:2
chr2	113146243	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:31:75:0.053:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	113146557	.	A	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:185,11:32:197:0.056:2	0/1:138,5:32:143:0.035:2	./.	./.	0/1:88,4:31:92:0.043:2	./.	./.	0/1:156,8:31:164:0.049:2	./.	0/1:155,12:31:167:0.072:2	0/1:191,6:32:197:0.030:2
chr2	113146608	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,24:32:168:0.143:2	./.	./.	./.	./.
chr2	113146766	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:172,6:32:179:0.034:2	0/1:167,7:32:174:0.040:2	./.	./.	0/1:139,6:30:145:0.041:2	./.	./.	0/1:164,7:29:171:0.041:2	./.	0/1:157,9:31:166:0.054:2	0/1:164,4:32:168:0.024:2
chr2	113147151	rs201952144	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,13:32:46:0.283:2	./.	./.	./.
chr2	113147159	rs376193885	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,16:31:52:0.308:2	0/1:14,6:33:20:0.300:2	./.	0/1:21,5:31:26:0.192:2	0/1:20,11:33:31:0.355:2	0/1:24,14:31:38:0.368:2	0/1:28,5:33:33:0.152:2	0/1:32,13:33:45:0.289:2	0/1:14,7:34:21:0.333:2	0/1:15,9:33:24:0.375:2	0/1:18,4:33:22:0.182:2
chr2	113147217	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,5:31:36:0.139:2	./.	./.	./.	./.	./.	./.
chr2	113147238	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:37,5:32:42:0.119:2	./.	./.	./.	0/1:28,3:34:31:0.097:2	0/1:29,3:30:32:0.094:2	./.	./.	./.	./.	./.
chr2	113147391	.	G	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,18:30:64:0.281:2	0/1:51,10:31:61:0.164:2	./.	0/1:45,21:30:66:0.318:2	./.	0/1:69,18:30:87:0.207:2
chr2	113147526	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,16:32:100:0.160:2	./.	./.	./.	./.
chr2	113147666	.	C	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:157,35:31:192:0.182:2	0/1:150,37:30:187:0.198:2	0/1:84,6:31:90:0.067:2	0/1:180,17:31:197:0.086:2	0/1:119,51:30:170:0.300:2	./.	0/1:149,23:30:173:0.134:2	./.	0/1:180,15:32:196:0.077:2	0/1:157,35:31:192:0.182:2	0/1:168,20:30:188:0.106:2
chr2	113147740	rs201000445	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:139,20:31:159:0.126:2	0/1:114,11:31:125:0.088:2	./.	0/1:125,26:30:151:0.172:2	./.	./.	./.	./.	./.	0/1:109,19:31:128:0.148:2	./.
chr2	113155572	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:150,36:32:186:0.194:2	0/1:98,27:32:125:0.216:2	0/1:37,12:33:49:0.245:2	0/1:157,33:33:190:0.174:2	./.	0/1:133,56:32:189:0.296:2	0/1:111,15:32:126:0.119:2	0/1:160,28:31:188:0.149:2	0/1:93,91:32:184:0.495:2	./.	0/1:157,33:32:190:0.174:2
chr2	113155718	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,10:31:136:0.074:2	0/1:73,9:31:82:0.110:2	./.	0/1:97,32:31:129:0.248:2	./.	0/1:165,16:29:181:0.088:2
chr2	113155745	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,8:29:90:0.089:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	113155817	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:33:192:0.021:2	./.	./.	./.
chr2	113159311	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:144,48:32:192:0.250:2	0/1:151,45:32:196:0.230:2	0/1:98,30:31:128:0.234:2	0/1:182,14:32:196:0.071:2	0/1:153,40:31:193:0.207:2	0/1:154,41:31:196:0.210:2	0/1:172,28:32:200:0.140:2	0/1:166,29:30:195:0.149:2	0/1:165,34:33:199:0.171:2	0/1:156,36:33:192:0.188:2	0/1:172,22:32:194:0.113:2
chr2	113161623	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:193,4:36:197:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr2	113161726	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:169,26:29:195:0.133:2	./.	./.	./.	./.	./.	./.
chr2	113179588	.	G	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:176,12:31:188:0.064:2	0/1:188,7:29:195:0.036:2	0/1:80,5:31:85:0.059:2	0/1:185,11:32:196:0.056:2	0/1:187,9:32:196:0.046:2	0/1:179,15:31:194:0.077:2	./.	0/1:187,9:32:198:0.046:2	0/1:191,5:33:196:0.026:2	0/1:182,7:33:190:0.037:2	0/1:182,8:31:190:0.042:2
chr2	113251880	rs61733584	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,22:31:79:0.278:2	./.	./.	./.	./.	./.	./.	./.
chr2	113258916	rs17846193	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,14:31:35:0.400:2	0/1:192,5:32:197:0.025:2	0/1:144,31:31:175:0.177:2	./.	0/1:141,42:32:183:0.230:2	0/1:140,37:32:177:0.209:2	0/1:126,48:33:174:0.276:2	0/1:135,44:31:179:0.246:2	0/1:114,39:32:154:0.255:2
chr2	113277949	rs62157538	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,13:29:26:0.500:2	./.	./.	./.	./.	0/1:99,89:30:188:0.473:2	0/1:96,97:30:193:0.503:2	0/1:101,93:29:194:0.479:2	0/1:99,89:29:189:0.473:2
chr2	113308516	rs2304555	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,151:33:152:0.993:2	0/1:1,94:32:95:0.989:2	0/1:14,16:33:30:0.533:2	0/1:1,177:33:178:0.994:2	0/1:80,58:32:138:0.420:2	0/1:0,195:32:195:1.00:2	0/1:1,171:33:172:0.994:2	0/1:97,98:33:195:0.503:2	0/1:116,79:34:195:0.405:2	0/1:110,85:32:195:0.436:2	0/1:90,101:33:192:0.529:2
chr2	113309473	rs1545133	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,107:32:109:0.982:2	0/1:1,54:32:55:0.982:2	0/1:8,8:31:16:0.500:2	0/1:0,114:31:114:1.00:2	0/1:60,33:31:93:0.355:2	0/1:2,80:31:82:0.976:2	0/1:51,33:31:84:0.393:2	0/1:82,65:31:147:0.442:2	0/1:67,54:32:121:0.446:2	0/1:49,55:32:104:0.529:2	0/1:77,58:31:136:0.430:2
chr2	113333029	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:31:134:0.030:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	113344047	rs752992	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,116:31:117:0.991:2	0/1:0,80:32:80:1.00:2	0/1:5,12:33:17:0.706:2	0/1:1,144:32:145:0.993:2	0/1:0,108:31:108:1.00:2	0/1:0,120:31:120:1.00:2	0/1:0,138:32:139:1.00:2	0/1:79,86:32:165:0.521:2	0/1:99,64:32:163:0.393:2	0/1:67,54:32:121:0.446:2	0/1:72,54:32:126:0.429:2
chr2	113346413	rs3748024	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,15:31:16:0.938:2	0/1:0,13:31:13:1.00:2	0/1:2,4:33:6:0.667:2	0/1:13,20:31:33:0.606:2	0/1:27,20:31:47:0.426:2	0/1:1,39:31:40:0.975:2	0/1:38,26:32:64:0.406:2	./.	0/1:41,23:31:64:0.359:2	0/1:7,19:31:26:0.731:2	0/1:20,20:31:40:0.500:2
chr2	113346480	rs41278942	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,16:31:26:0.615:2	./.	0/1:23,19:32:42:0.452:2	0/1:29,22:32:51:0.431:2	./.	0/1:35,29:33:64:0.453:2	0/1:6,19:32:25:0.760:2	./.
chr2	113404708	rs4849091	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,14:30:14:1.00:2	./.	0/1:66,46:29:112:0.411:2	./.	0/1:3,107:30:110:0.973:2	0/1:2,139:30:141:0.986:2	0/1:1,105:31:106:0.991:2	./.	0/1:0,130:30:130:1.00:2
chr2	113404974	rs139798830	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:115,71:31:186:0.382:2	./.	./.	./.	./.	./.	./.
chr2	113410303	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:31:157:0.025:2	./.	./.	./.
chr2	113418774	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:166,4:31:170:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr2	113479614	rs13386452	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:30:42:1.00:2	0/1:0,30:31:30:1.00:2	0/1:4,5:31:9:0.556:2	0/1:0,55:30:55:1.00:2	0/1:53,45:30:98:0.459:2	0/1:0,61:30:61:1.00:2	./.	0/1:59,41:31:101:0.410:2	0/1:32,31:31:63:0.492:2	0/1:1,46:31:47:0.979:2	./.
chr2	113480320	rs61743392	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,15:32:24:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	113480739	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,30:29:72:0.417:2	./.	./.	./.	./.	./.
chr2	113482779	rs4849116	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:32:85:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,94:31:94:1.00:2	0/1:0,114:32:114:1.00:2	0/1:0,133:33:133:1.00:2	0/1:0,107:33:107:1.00:2	0/1:0,109:33:109:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,77:33:77:1.00:2
chr2	113483037	rs13417956	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,57:30:105:0.543:2	./.	./.	./.
chr2	113484319	rs2138604	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,78:32:78:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,125:32:125:1.00:2	0/1:0,124:31:124:1.00:2	0/1:1,115:31:116:0.991:2	0/1:0,136:32:136:1.00:2	0/1:1,139:31:140:0.993:2	0/1:1,99:32:100:0.990:2	0/1:0,76:33:76:1.00:2	0/1:0,115:32:115:1.00:2
chr2	113487266	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,42:32:76:0.553:2	./.	./.	./.
chr2	113496434	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,35:31:66:0.530:2	./.
chr2	113498566	rs3811040	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:116,4:35:120:0.033:2	./.	0/1:3,11:33:14:0.786:2	./.	0/1:1,92:32:93:0.989:2	./.	0/1:67,73:33:140:0.521:2	./.	0/1:94,58:34:152:0.382:2	0/1:56,57:33:113:0.504:2	0/1:0,143:33:143:1.00:2
chr2	113513825	rs6731822	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,142:30:142:1.00:2	0/1:0,112:29:112:1.00:2	0/1:0,23:30:23:1.00:2	0/1:1,113:30:114:0.991:2	0/1:0,119:29:119:1.00:2	0/1:0,99:29:99:1.00:2	0/1:1,100:29:101:0.990:2	0/1:0,127:29:127:1.00:2	0/1:0,165:30:165:1.00:2	0/1:0,110:30:110:1.00:2	0/1:2,166:29:168:0.988:2
chr2	113520129	rs36093393	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,34:30:62:0.548:2	./.	./.	./.	0/1:42,45:32:89:0.517:2	./.	./.
chr2	113537223	rs17561	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,62:30:133:0.466:2	./.	0/1:72,66:31:138:0.478:2	0/1:99,75:30:174:0.431:2	0/1:87,96:32:183:0.525:2	./.	./.
chr2	113590390	rs1143634	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:158,4:33:162:0.025:2	0/1:96,75:31:171:0.439:2	./.	0/1:98,47:31:145:0.324:2	0/1:79,72:31:151:0.477:2	0/1:100,72:32:172:0.419:2	./.	./.
chr2	113671378	rs3811046	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,102:30:103:0.990:2	0/1:1,52:31:53:0.981:2	0/1:8,8:29:16:0.500:2	0/1:1,123:30:124:0.992:2	0/1:49,50:28:99:0.505:2	0/1:1,124:30:125:0.992:2	0/1:89,57:30:146:0.390:2	0/1:78,69:30:147:0.469:2	0/1:96,69:29:165:0.418:2	0/1:0,121:30:121:1.00:2	0/1:107,62:30:169:0.367:2
chr2	113671410	rs3811047	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,114:31:116:0.991:2	0/1:2,92:30:94:0.979:2	0/1:8,10:30:18:0.556:2	0/1:3,150:30:153:0.980:2	0/1:42,57:30:99:0.576:2	0/1:0,137:30:137:1.00:2	0/1:82,71:30:154:0.464:2	0/1:69,78:30:147:0.531:2	0/1:98,79:31:178:0.446:2	0/1:0,153:30:153:1.00:2	0/1:71,56:30:127:0.441:2
chr2	113674709	rs2708943	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:30:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	0/1:50,48:28:98:0.490:2
chr2	113674721	rs2723183	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	0/1:58,48:32:106:0.453:2
chr2	113675269	rs2723187	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,11:33:34:0.324:2
chr2	113676219	rs2708947	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,21:30:67:0.313:2
chr2	113676381	rs2723192	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	0/1:26,26:31:52:0.500:2
chr2	113763463	rs2305152	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,27:28:57:0.474:2	./.	0/1:51,43:29:94:0.457:2	0/1:56,66:29:122:0.541:2	./.	./.	0/1:62,64:30:126:0.508:2
chr2	113763575	rs895497	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:27:8:0.375:2	./.	0/1:0,79:31:79:1.00:2	0/1:55,39:30:94:0.415:2	0/1:0,57:30:57:1.00:2	0/1:64,44:29:108:0.407:2	0/1:0,91:31:91:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,105:30:106:1.00:2
chr2	113789316	rs2305150	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,4:32:16:0.250:2	./.	0/1:30,26:31:57:0.464:2	0/1:39,34:30:73:0.466:2	0/1:0,55:30:55:1.00:2	0/1:43,48:30:91:0.527:2	0/1:43,38:32:81:0.469:2	0/1:0,50:31:50:1.00:2	0/1:0,74:31:74:1.00:2
chr2	113831945	rs3811058	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,90:29:193:0.466:2	./.	0/1:55,48:30:103:0.466:2	./.
chr2	113832312	rs6761276	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,21:32:21:1.00:2	./.	0/1:101,69:32:170:0.406:2	0/1:95,99:31:194:0.510:2	0/1:4,159:32:163:0.975:2	./.	0/1:1,187:33:188:0.995:2	0/1:76,83:32:159:0.522:2	0/1:1,176:32:177:0.994:2
chr2	113832333	rs6743376	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,16:30:16:1.00:2	./.	0/1:89,69:31:158:0.437:2	0/1:91,87:30:178:0.489:2	0/1:3,147:30:150:0.980:2	0/1:84,79:29:163:0.485:2	0/1:1,175:31:176:0.994:2	0/1:0,144:30:144:1.00:2	0/1:1,173:30:174:0.994:2
chr2	113875565	rs2234678	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:29:6:0.667:2	./.	./.	0/1:43,38:30:81:0.469:2	./.	./.	0/1:45,22:29:67:0.328:2	0/1:0,42:29:42:1.00:2	./.
chr2	113875584	rs2234679	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:32:7:0.714:2	./.	./.	0/1:46,37:32:83:0.446:2	./.	./.	0/1:39,23:33:62:0.371:2	0/1:0,42:33:42:1.00:2	./.
chr2	113875631	rs16065	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,20:32:46:0.435:2	./.	./.	0/1:23,16:33:39:0.410:2	0/1:2,25:32:27:0.926:2	./.
chr2	113877713	rs878972	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	./.	0/1:33,26:32:59:0.441:2	./.	./.	0/1:42,20:33:62:0.323:2	0/1:0,56:32:57:1.00:2	./.
chr2	113887207	rs419598	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,3:28:14:0.214:2	0/1:114,70:31:184:0.380:2	./.	0/1:111,70:30:181:0.387:2	./.	./.	0/1:77,48:32:125:0.384:2	0/1:0,97:30:97:1.00:2	./.
chr2	113890304	rs315952	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,82:30:85:0.965:2	0/1:1,49:31:50:0.980:2	./.	0/1:2,99:30:101:0.980:2	0/1:74,58:30:132:0.439:2	0/1:63,35:31:98:0.357:2	./.	0/1:2,126:30:128:0.984:2	./.	./.	./.
chr2	113940681	rs3748914	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:30:45:1.00:2	0/1:0,18:30:18:1.00:2	0/1:6,3:30:9:0.333:2	0/1:17,27:30:44:0.614:2	./.	0/1:36,17:31:53:0.321:2	./.	0/1:23,29:28:52:0.558:2	./.	./.	./.
chr2	113940839	rs4849167	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,94:30:96:0.979:2	0/1:2,54:30:56:0.964:2	0/1:3,8:29:11:0.727:2	0/1:59,46:31:105:0.438:2	./.	0/1:61,49:29:110:0.445:2	./.	0/1:42,62:29:104:0.596:2	./.	./.	./.
chr2	113943470	rs2241976	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:31:82:1.00:2	0/1:1,50:31:51:0.980:2	0/1:5,10:32:15:0.667:2	0/1:73,72:31:145:0.497:2	./.	0/1:81,60:31:141:0.426:2	./.	0/1:84,82:31:166:0.494:2	./.	./.	./.
chr2	113950880	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:31:49:0.082:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	113951239	rs369791634	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,75:33:139:0.540:2	./.	./.
chr2	113956371	rs2276561	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,3:30:3:1.00:2	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	0/1:0,2:35:2:1.00:2	./.	./.	./.
chr2	113976146	rs368201100	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:11,11:28:22:0.500:2	0/1:8,7:29:15:0.467:2	./.	./.	./.	./.	./.	./.	./.	0/1:19,12:24:32:0.387:2	./.
chr2	114035923	rs1867763	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,7:32:15:0.467:2	./.	./.	0/1:22,15:31:37:0.405:2	0/1:19,3:31:22:0.136:2	0/1:16,9:32:25:0.360:2	./.	./.	./.	./.	./.
chr2	114199006	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,5:32:197:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr2	114201417	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:150,31:32:181:0.171:2	0/1:169,29:30:198:0.146:2	0/1:173,11:30:184:0.060:2	0/1:180,15:32:195:0.077:2	0/1:180,14:31:194:0.072:2	0/1:164,29:31:193:0.150:2	./.	0/1:170,27:32:197:0.137:2	./.	./.	0/1:178,11:30:189:0.058:2
chr2	114202622	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:116,5:32:121:0.041:2	0/1:48,4:33:52:0.077:2	./.	./.	./.	./.	0/1:159,8:32:168:0.048:2	0/1:184,4:35:188:0.021:2	./.	./.
chr2	114252745	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:32:110:0.036:2	./.	./.	./.	./.
chr2	114256840	rs147906017	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,58:32:129:0.453:2	./.	./.	./.
chr2	114256859	rs189095552	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,34:31:116:0.296:2	./.	./.	./.
chr2	114256978	rs2757970	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,11:32:133:0.083:2	./.	./.	./.
chr2	114257073	rs374836136	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:30:55:0.073:2	./.	./.	./.	./.
chr2	114257079	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:30:55:0.073:2	./.	./.	./.	./.
chr2	114257085	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,5:32:72:0.069:2	./.	./.
chr2	114257095	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:29:56:0.071:2	0/1:44,5:29:49:0.102:2	./.	./.	./.
chr2	114257162	rs201655302	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:76,15:32:92:0.165:2	0/1:62,21:32:83:0.253:2	./.	0/1:128,24:33:152:0.158:2	0/1:86,25:31:111:0.225:2	0/1:132,27:32:159:0.170:2	0/1:78,20:33:98:0.204:2	0/1:106,9:34:115:0.078:2	0/1:111,27:33:138:0.196:2	0/1:83,6:33:89:0.067:2	0/1:63,7:34:70:0.100:2
chr2	114257266	rs142136016	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:128,18:32:146:0.123:2	0/1:97,25:30:122:0.205:2	./.	./.	0/1:77,26:25:103:0.252:2	0/1:110,22:25:132:0.167:2	0/1:95,32:27:127:0.252:2	./.	0/1:92,18:29:110:0.164:2	./.	./.
chr2	114257296	rs199845792	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:61,13:27:74:0.176:2	0/1:65,18:29:83:0.217:2	./.	0/1:61,41:24:103:0.402:2	0/1:78,22:24:100:0.220:2	0/1:100,17:27:117:0.145:2	0/1:101,15:26:116:0.129:2	0/1:54,30:25:85:0.357:2	0/1:86,12:25:98:0.122:2	./.	./.
chr2	114257319	rs141841883	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:29:13:0.308:2	./.	0/1:85,51:31:136:0.375:2	./.	./.	./.	0/1:78,43:32:121:0.355:2	./.	./.
chr2	114257354	rs202243377	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:65,4:33:70:0.058:2	0/1:38,6:31:44:0.136:2	./.	0/1:68,10:33:78:0.128:2	0/1:61,4:27:65:0.062:2	0/1:68,8:33:76:0.105:2	0/1:45,4:32:49:0.082:2	0/1:45,9:33:54:0.167:2	0/1:71,4:34:75:0.053:2	./.	./.
chr2	114257590	rs200085244	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	./.	./.
chr2	114257595	rs199633498	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:26:6:0.500:2	./.	./.	./.
chr2	114257660	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,4:29:12:0.333:2	0/1:10,4:29:14:0.286:2	./.	./.	./.
chr2	114257696	.	A	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:21,5:28:26:0.192:2	./.	./.	0/1:19,3:31:22:0.136:2	./.	./.	0/1:12,5:29:17:0.294:2	0/1:13,5:26:18:0.278:2	./.	./.	./.
chr2	114257797	.	A	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:35,5:32:40:0.125:2	./.	./.	./.	./.	0/1:66,6:32:72:0.083:2	./.	./.	0/1:47,5:29:52:0.096:2	0/1:62,7:32:70:0.101:2
chr2	114257820	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,12:30:75:0.160:2	0/1:33,10:32:43:0.233:2	0/1:13,4:31:17:0.235:2	0/1:100,12:30:112:0.107:2	0/1:62,23:30:85:0.271:2	0/1:90,15:30:105:0.143:2	0/1:63,11:31:74:0.149:2	0/1:72,11:30:83:0.133:2	0/1:61,4:31:65:0.062:2	0/1:50,11:30:61:0.180:2	0/1:76,15:31:91:0.165:2
chr2	114257861	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:145,10:29:155:0.065:2	./.	./.	0/1:116,4:32:120:0.033:2	./.	./.	./.
chr2	114257891	.	C	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:178,6:31:184:0.033:2	0/1:164,20:30:184:0.109:2	0/1:171,7:32:178:0.039:2	0/1:173,6:32:179:0.034:2	0/1:145,11:32:156:0.071:2	./.	0/1:124,5:33:129:0.039:2	./.
chr2	114257907	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:178,4:32:182:0.022:2	0/1:171,13:30:184:0.071:2	0/1:163,6:31:169:0.036:2	0/1:171,5:33:176:0.028:2	0/1:146,8:33:154:0.052:2	./.	./.	./.
chr2	114257936	rs145615058	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:126,11:29:137:0.080:2	0/1:66,5:31:71:0.070:2	./.	0/1:133,6:28:139:0.043:2	0/1:115,15:27:132:0.115:2	0/1:123,7:27:130:0.054:2	0/1:133,10:29:143:0.070:2	0/1:120,8:27:128:0.063:2	0/1:129,6:31:135:0.044:2	0/1:125,5:30:130:0.038:2	0/1:120,8:26:128:0.063:2
chr2	114258017	.	G	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,3:30:26:0.115:2	./.	./.	./.	0/1:30,5:30:35:0.143:2	0/1:35,5:32:40:0.125:2	0/1:17,5:31:22:0.227:2	./.	./.	./.	0/1:14,5:30:19:0.263:2
chr2	114258032	.	C	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,4:31:49:0.082:2	0/1:37,4:30:42:0.098:2	0/1:39,4:33:43:0.093:2	./.	./.	./.	./.	./.
chr2	114258043	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,4:26:46:0.087:2	./.	./.	./.	./.	./.	./.
chr2	114258227	rs143668791	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,64:29:139:0.460:2	./.	./.	./.	./.	./.	./.
chr2	114258273	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,6:27:197:0.030:2
chr2	114258324	rs11688758	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:189,6:30:195:0.031:2	0/1:189,6:33:195:0.031:2	./.	./.	0/1:180,6:30:186:0.032:2	0/1:188,6:30:194:0.031:2	./.	0/1:183,7:31:190:0.037:2	0/1:192,4:33:196:0.020:2	0/1:187,7:31:196:0.036:2	0/1:185,10:32:195:0.051:2
chr2	114258370	rs116543208	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,36:32:63:0.571:2	./.	0/1:91,95:31:186:0.511:2	./.	./.	./.	./.	./.	./.
chr2	114258373	rs151315373	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:186,5:31:191:0.026:2	./.	./.	./.	./.	./.	0/1:179,4:32:183:0.022:2
chr2	114258384	rs2144270	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,58:29:58:1.00:2	./.	0/1:80,105:28:185:0.568:2	0/1:2,178:28:181:0.989:2	0/1:178,7:27:185:0.038:2	0/1:184,6:26:191:0.032:2	0/1:1,174:30:175:0.994:2	0/1:0,175:28:175:1.00:2	./.
chr2	114258390	.	T	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:178,5:33:183:0.027:2	./.	./.	0/1:176,9:32:185:0.049:2	0/1:182,7:31:189:0.037:2	0/1:181,13:33:194:0.067:2	0/1:165,16:32:181:0.088:2	0/1:177,12:33:189:0.063:2	0/1:174,18:32:193:0.094:2	0/1:172,15:31:188:0.080:2	0/1:168,5:34:173:0.029:2
chr2	114258394	rs6714080	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:162,16:29:178:0.090:2	0/1:187,6:32:193:0.031:2	./.	0/1:159,21:32:180:0.117:2	0/1:172,15:30:187:0.080:2	0/1:168,25:32:193:0.130:2	0/1:156,27:31:183:0.148:2	0/1:164,25:32:189:0.132:2	0/1:170,23:31:193:0.119:2	0/1:152,30:32:183:0.165:2	0/1:160,12:32:172:0.070:2
chr2	114258536	rs3982977	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:177,18:31:196:0.092:2	0/1:164,18:32:182:0.099:2	0/1:68,4:30:72:0.056:2	0/1:182,15:31:198:0.076:2	0/1:175,13:31:188:0.069:2	0/1:178,20:30:198:0.101:2	0/1:176,16:31:192:0.083:2	0/1:165,15:31:180:0.083:2	0/1:184,13:31:197:0.066:2	0/1:182,16:31:198:0.081:2	0/1:183,14:32:197:0.071:2
chr2	114258645	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,10:33:181:0.055:2	./.	./.	./.
chr2	114340615	rs2441621	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:161,19:33:180:0.106:2	0/1:104,12:32:116:0.103:2	0/1:12,5:30:17:0.294:2	0/1:159,21:32:180:0.117:2	0/1:47,11:33:58:0.190:2	0/1:136,16:31:152:0.105:2	0/1:71,9:33:80:0.113:2	0/1:128,10:31:138:0.072:2	0/1:81,16:33:97:0.165:2	0/1:163,16:32:179:0.089:2	0/1:123,20:32:143:0.140:2
chr2	114340628	rs7589328	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,3:27:12:0.250:2	0/1:171,15:33:186:0.081:2	./.	./.	./.	./.	./.	./.	0/1:135,16:33:151:0.106:2
chr2	114340631	rs74625964	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,15:32:164:0.091:2	./.	./.	./.	0/1:171,16:33:187:0.086:2	./.
chr2	114340663	rs6542147	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:92,70:31:163:0.432:2	0/1:74,46:32:120:0.383:2	./.	0/1:79,98:32:177:0.554:2	0/1:35,20:31:55:0.364:2	0/1:104,56:31:160:0.350:2	0/1:55,22:31:77:0.286:2	0/1:91,43:30:134:0.321:2	0/1:86,19:32:105:0.181:2	0/1:92,68:31:160:0.425:2	0/1:119,28:32:147:0.190:2
chr2	114391721	rs793079	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:51,29:31:80:0.363:2	0/1:33,18:31:51:0.353:2	./.	0/1:62,37:30:100:0.374:2	./.	./.	./.	./.	./.	./.	0/1:48,17:31:65:0.262:2
chr2	114392624	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:166,4:31:170:0.024:2	./.	./.	./.	./.	./.	./.
chr2	114392716	rs146907164	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:54,28:31:82:0.341:2	0/1:38,20:31:58:0.345:2	./.	0/1:77,60:31:137:0.438:2	./.	./.	./.	0/1:75,60:31:135:0.444:2	0/1:59,39:31:98:0.398:2	0/1:4,100:31:105:0.962:2	0/1:49,48:31:97:0.495:2
chr2	114399448	rs199586694	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,46:29:193:0.238:2	./.	./.	./.	./.	./.
chr2	115822349	rs114821649	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,91:33:185:0.492:2	./.	./.
chr2	116447277	rs35766316	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,28:31:74:0.378:2	./.	./.	./.	0/1:31,35:32:66:0.530:2	./.
chr2	116503671	rs36044503	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,20:31:49:0.408:2	./.	./.	./.	0/1:26,14:32:40:0.350:2	./.
chr2	116510817	rs2053724	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:56,58:33:114:0.509:2	0/1:52,24:32:76:0.316:2	./.	0/1:82,67:32:149:0.450:2	0/1:52,42:32:94:0.447:2	./.	0/1:0,76:31:76:1.00:2	0/1:104,61:32:165:0.370:2	0/1:0,121:33:121:1.00:2	./.	./.
chr2	116525960	rs1446495	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,117:32:118:0.992:2	0/1:0,60:32:60:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,103:31:103:1.00:2	0/1:0,84:31:84:1.00:2	0/1:0,116:31:116:1.00:2	0/1:0,122:32:122:1.00:2	0/1:0,144:32:144:1.00:2	0/1:1,146:32:147:0.993:2	0/1:0,99:32:99:1.00:2	0/1:0,156:32:156:1.00:2
chr2	116539911	rs75830748	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,23:27:46:0.500:2	./.	./.	./.	0/1:23,18:29:41:0.439:2	./.
chr2	118572361	.	A	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:27,4:24:32:0.129:2	./.	./.	0/1:67,10:14:77:0.130:2	./.	./.	0/1:78,13:13:91:0.143:2	./.	./.	./.	0/1:45,7:16:52:0.135:2
chr2	118575215	rs1052637	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,9:33:13:0.692:2	./.	0/1:30,16:33:46:0.348:2	0/1:0,64:33:65:1.00:2	0/1:24,21:32:45:0.467:2	./.	0/1:1,72:34:73:0.986:2	./.	0/1:49,33:33:82:0.402:2
chr2	118582620	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:28:198:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	118583100	rs1052639	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,43:33:88:0.489:2	0/1:32,25:32:57:0.439:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	118583849	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,10:32:75:0.133:2	./.	./.	./.	./.
chr2	118583940	rs2303348	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,18:32:37:0.486:2	0/1:4,16:32:20:0.800:2	./.	0/1:31,15:31:46:0.326:2	0/1:24,15:31:39:0.385:2	./.	0/1:21,13:31:34:0.382:2	./.	./.	0/1:1,28:31:29:0.966:2	0/1:25,21:32:46:0.457:2
chr2	118677916	rs35891278	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,30:29:52:0.577:2	./.	./.	./.	0/1:0,39:30:39:1.00:2	./.	./.	0/1:17,9:28:26:0.346:2
chr2	118677932	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,4:31:28:0.143:2	./.	./.
chr2	118731573	rs748767	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:16,10:31:26:0.385:2	0/1:4,7:31:11:0.636:2	./.	./.	./.	./.	0/1:21,22:30:43:0.512:2	./.	./.	0/1:21,16:31:37:0.432:2	0/1:20,10:31:31:0.333:2
chr2	118732831	rs17512204	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:21,24:32:45:0.533:2	0/1:14,14:32:29:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:14,25:31:39:0.641:2	./.
chr2	118743630	rs33975708	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,54:32:124:0.435:2	./.	./.	./.	0/1:0,165:33:165:1.00:2	./.	./.	0/1:74,58:33:132:0.439:2
chr2	118753097	rs17584619	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:19,18:31:37:0.486:2	0/1:15,10:32:25:0.400:2	./.	./.	./.	./.	0/1:12,11:32:23:0.478:2	./.	./.	./.	0/1:38,36:32:74:0.486:2
chr2	118771566	rs11545372	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,9:30:15:0.600:2	0/1:33,37:30:70:0.529:2	0/1:26,24:29:50:0.480:2	0/1:42,32:30:74:0.432:2	0/1:21,20:31:41:0.488:2	0/1:1,69:29:70:0.986:2	0/1:0,61:31:61:1.00:2	./.	0/1:18,24:30:42:0.571:2
chr2	118860873	rs35551800	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,51:30:101:0.505:2	./.
chr2	119748143	rs116412702	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:33,31:28:64:0.484:2	0/1:13,8:26:21:0.381:2	./.	./.	0/1:9,10:27:19:0.526:2	./.	./.	0/1:18,14:27:32:0.438:2	./.	./.	0/1:24,18:29:42:0.429:2
chr2	119748152	rs199736481	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,6:24:18:0.333:2	./.	0/1:35,7:15:42:0.167:2	0/1:17,6:23:23:0.261:2	./.	0/1:50,6:20:56:0.107:2	./.	./.
chr2	119751997	rs34536804	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,60:33:109:0.550:2	./.	./.	./.
chr2	119915249	rs7556873	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,47:31:96:0.490:2	0/1:38,21:31:59:0.356:2	0/1:3,11:33:14:0.786:2	0/1:3,114:32:117:0.974:2	0/1:105,83:31:188:0.441:2	0/1:82,58:32:140:0.414:2	./.	0/1:2,166:32:168:0.988:2	0/1:0,119:33:119:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,87:31:88:1.00:2
chr2	119988565	rs838100	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,12:29:45:0.267:2	0/1:23,12:31:35:0.343:2	./.	0/1:43,36:30:79:0.456:2	0/1:48,51:30:99:0.515:2	./.	0/1:0,102:30:102:1.00:2	0/1:41,37:30:78:0.474:2	0/1:31,27:31:58:0.466:2	0/1:32,24:30:57:0.429:2	./.
chr2	120005312	rs17013371	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,27:30:49:0.551:2	./.	./.	./.	./.
chr2	120005569	rs17805141	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,18:32:39:0.462:2	0/1:5,9:32:14:0.643:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	120005751	rs199836424	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,46:32:76:0.605:2	./.
chr2	120012412	rs41279770	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,34:29:94:0.362:2	./.	./.	0/1:41,42:31:83:0.506:2	./.	0/1:0,81:30:81:1.00:2
chr2	120015164	rs111712266	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,41:30:117:0.350:2	./.	./.	0/1:67,62:30:129:0.481:2	./.	0/1:0,114:29:114:1.00:2
chr2	120015197	rs6542517	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,93:32:166:0.560:2	./.	./.	./.	./.
chr2	120060082	rs1052500	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,39:33:76:0.513:2	0/1:33,34:33:67:0.507:2	0/1:2,8:32:10:0.800:2	0/1:56,48:32:104:0.462:2	0/1:32,36:33:68:0.529:2	0/1:47,30:32:77:0.390:2	0/1:34,32:33:66:0.485:2	0/1:2,99:33:101:0.980:2	0/1:51,49:33:100:0.490:2	0/1:48,46:33:94:0.489:2	./.
chr2	120060106	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:32:72:0.056:2	./.
chr2	120078778	rs1132267	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,54:33:142:0.380:2	0/1:47,54:32:101:0.535:2	0/1:10,17:32:27:0.630:2	0/1:104,91:33:195:0.467:2	0/1:62,42:32:104:0.404:2	0/1:113,82:32:195:0.421:2	0/1:56,43:33:99:0.434:2	0/1:5,179:32:185:0.973:2	0/1:114,83:33:197:0.421:2	0/1:70,74:32:144:0.514:2	./.
chr2	120197784	rs145773754	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,59:31:117:0.504:2	./.	./.	./.	./.	./.
chr2	120199140	rs1126839	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,10:30:33:0.303:2	0/1:13,7:29:20:0.350:2	0/1:0,9:31:9:1.00:2	0/1:0,53:30:53:1.00:2	0/1:29,17:29:46:0.370:2	0/1:0,35:29:35:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,37:29:37:1.00:2	0/1:18,24:29:42:0.571:2
chr2	120219546	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:31:77:0.052:2	./.
chr2	120362294	rs61741340	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,7:32:27:0.259:2	./.	./.
chr2	120366070	rs34202604	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,5:19:23:0.217:2
chr2	120369300	rs10864986	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:29:80:1.00:2	0/1:0,60:28:60:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,118:29:118:1.00:2	0/1:0,61:28:61:1.00:2	0/1:0,104:28:104:1.00:2	0/1:0,103:29:103:1.00:2	0/1:0,109:29:109:1.00:2	0/1:0,107:29:107:1.00:2	0/1:0,89:29:89:1.00:2	0/1:0,132:28:132:1.00:2
chr2	120388412	rs2272058	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,110:32:110:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,137:32:137:1.00:2	0/1:0,105:31:105:1.00:2	0/1:0,98:31:98:1.00:2	0/1:0,88:31:88:1.00:2	0/1:0,119:31:119:1.00:2	0/1:0,131:32:131:1.00:2	0/1:0,113:31:113:1.00:2	0/1:0,111:31:111:1.00:2
chr2	120409616	rs11686014	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,48:31:95:0.505:2	0/1:0,42:32:42:1.00:2	./.	./.	./.	0/1:51,39:32:90:0.433:2
chr2	120413984	rs116625089	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,22:33:43:0.512:2	./.	./.
chr2	120413986	rs186291259	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,22:28:45:0.489:2	./.	./.	./.	./.	./.	./.
chr2	120438515	rs11684353	G	C,T	.	PASS	AC=3,1;AF=0.250,0.083;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32:120:0.567:2	0/1:32:103:1.00:2	./.	./.	0/2:31:96:0.563:2	0/1:32:114:0.509:2
chr2	120438523	rs13011768	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:32:63:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,7:30:7:1.00:2	0/1:1,97:32:98:0.990:2	0/1:1,102:32:103:0.990:2	0/1:70,52:31:122:0.426:2	./.	0/1:1,95:31:96:0.990:2	0/1:0,66:32:66:1.00:2	0/1:0,82:32:82:1.00:2	0/1:56,53:32:109:0.486:2
chr2	120438696	rs939777	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,75:32:75:1.00:2	0/1:1,78:33:79:0.987:2	0/1:0,90:33:90:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,73:33:73:1.00:2
chr2	120439230	rs1983406	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,53:33:54:0.981:2	0/1:2,45:33:48:0.957:2	0/1:0,6:30:6:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,61:32:61:1.00:2	0/1:42,38:33:80:0.475:2	./.	0/1:2,60:32:62:0.968:2	0/1:0,66:34:66:1.00:2	0/1:0,50:32:50:1.00:2	0/1:37,25:33:62:0.403:2
chr2	120439459	rs4849797	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:33:57:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,29:31:29:1.00:2	0/1:34,36:31:70:0.514:2	./.	0/1:0,69:32:69:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,51:32:51:1.00:2	0/1:33,44:32:77:0.571:2
chr2	120635074	rs61737537	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,25:33:40:0.625:2	0/1:11,7:31:18:0.389:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	120704166	rs2289580	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:72,33:32:105:0.314:2	0/1:32,12:32:44:0.273:2	./.	0/1:3,55:32:58:0.948:2	0/1:37,20:30:57:0.351:2	0/1:0,53:30:53:1.00:2	0/1:3,30:31:33:0.909:2	0/1:0,43:31:43:1.00:2	0/1:0,67:32:67:1.00:2	0/1:51,22:32:73:0.301:2	0/1:1,75:31:76:0.987:2
chr2	120714506	rs72840427	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,29:32:68:0.426:2	0/1:14,7:31:21:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	120734635	rs3189128	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,35:32:70:0.507:2	0/1:31,22:32:53:0.415:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	120776747	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,3:30:14:0.214:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	120830815	rs3738970	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:32:85:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,113:32:113:1.00:2	0/1:46,16:31:62:0.258:2	0/1:0,69:32:69:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,91:33:91:1.00:2	0/1:33,46:33:80:0.582:2	0/1:1,99:32:100:0.990:2
chr2	120831687	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:30:63:0.063:2	./.	./.	./.	./.
chr2	120885310	rs1034489	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,28:32:81:0.346:2	0/1:20,20:32:40:0.500:2	0/1:9,8:30:17:0.471:2	0/1:0,101:32:101:1.00:2	0/1:47,48:31:95:0.505:2	0/1:2,92:30:94:0.979:2	0/1:0,74:32:74:1.00:2	0/1:0,112:31:112:1.00:2	0/1:62,45:32:107:0.421:2	0/1:41,21:32:62:0.339:2	0/1:1,110:32:111:0.991:2
chr2	121036333	rs11545293	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:27,23:31:51:0.460:2	0/1:17,13:30:30:0.433:2	0/1:9,8:31:17:0.471:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	121106850	rs4328642	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,72:32:156:0.462:2	./.	./.
chr2	121554927	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,4:31:22:0.182:2	./.	./.	./.	./.
chr2	121726447	rs2592595	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,6:29:6:1.00:2	0/1:32,16:32:48:0.333:2	0/1:0,66:32:66:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,33:33:33:1.00:2	0/1:17,17:32:34:0.500:2	0/1:0,22:31:22:1.00:2
chr2	121746956	rs3738880	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,21:33:40:0.525:2	0/1:14,12:31:26:0.462:2	0/1:0,8:30:8:1.00:2	0/1:0,47:31:47:1.00:2	./.	0/1:0,46:31:46:1.00:2	0/1:3,56:31:59:0.949:2	0/1:28,16:30:44:0.364:2	0/1:0,31:33:31:1.00:2	0/1:1,46:31:47:0.979:2	0/1:28,14:33:42:0.333:2
chr2	121747406	rs12711538	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,40:31:78:0.513:2	0/1:27,20:32:47:0.426:2	0/1:0,20:31:20:1.00:2	0/1:0,125:31:125:1.00:2	./.	0/1:0,93:31:93:1.00:2	0/1:1,136:31:137:0.993:2	0/1:87,44:32:131:0.336:2	0/1:0,111:32:111:1.00:2	0/1:1,71:32:72:0.986:2	0/1:41,37:32:78:0.474:2
chr2	121747429	rs10167980	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,36:29:77:0.468:2	0/1:26,14:29:40:0.350:2	0/1:0,24:29:24:1.00:2	0/1:0,110:30:110:1.00:2	./.	0/1:1,91:30:92:0.989:2	0/1:1,130:30:131:0.992:2	0/1:90,43:30:133:0.323:2	0/1:0,112:30:112:1.00:2	0/1:1,80:30:81:0.988:2	0/1:42,35:30:77:0.455:2
chr2	121981950	rs11890430	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,23:29:57:0.404:2	0/1:27,15:29:42:0.357:2	./.	./.	./.	0/1:41,36:29:77:0.468:2	0/1:47,38:30:85:0.447:2	0/1:50,41:30:91:0.451:2	./.	./.	0/1:42,17:29:59:0.288:2
chr2	121989489	rs2304667	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,44:30:77:0.571:2	0/1:37,27:31:64:0.422:2	0/1:0,25:31:25:1.00:2	0/1:84,77:31:161:0.478:2	0/1:109,72:31:181:0.398:2	0/1:77,77:31:154:0.500:2	0/1:103,89:30:192:0.464:2	./.	0/1:85,70:32:155:0.452:2	0/1:55,63:31:118:0.534:2	./.
chr2	122006620	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,27:32:63:0.429:2	./.
chr2	122139854	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:29:82:0.049:2	./.	./.	./.	./.	./.
chr2	122165159	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:32:87:0.046:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	122184950	rs72967386	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,64:31:166:0.386:2	0/1:107,87:31:194:0.448:2	./.	./.	./.	./.	./.
chr2	122216419	rs2304560	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,30:32:51:0.588:2	0/1:5,15:31:20:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	122260814	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,43:33:98:0.439:2
chr2	122484976	rs1056014	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,43:31:97:0.443:2	0/1:71,77:31:148:0.520:2	./.	./.	./.	./.	./.
chr2	122489522	rs182341488	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,3:34:55:0.055:2	./.	./.
chr2	125192068	rs1425745	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,125:30:125:1.00:2	0/1:0,64:30:64:1.00:2	0/1:0,11:29:11:1.00:2	0/1:1,135:30:136:0.993:2	0/1:0,83:30:83:1.00:2	0/1:0,109:29:109:1.00:2	0/1:0,90:30:90:1.00:2	0/1:81,70:30:151:0.464:2	0/1:1,98:31:99:0.990:2	0/1:2,108:30:110:0.982:2	0/1:0,173:29:173:1.00:2
chr2	125281910	rs17727261	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,41:33:86:0.477:2
chr2	125547511	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:34:77:0.052:2	./.	./.
chr2	127447841	rs56070638	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:32:171:0.023:2	./.	./.	./.	./.
chr2	127453664	rs1050967	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,8:27:20:0.400:2	0/1:77,70:28:147:0.476:2	0/1:0,179:27:179:1.00:2	./.	0/1:0,177:28:177:1.00:2	0/1:77,92:29:169:0.544:2	0/1:2,151:29:153:0.987:2	0/1:72,67:28:139:0.482:2	./.
chr2	127811042	rs76414720	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:60,51:32:111:0.459:2	0/1:40,32:31:72:0.444:2	0/1:4,7:31:11:0.636:2	./.	0/1:109,72:32:182:0.398:2	./.	./.	./.	./.	./.	./.
chr2	127816617	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,5:32:11:0.455:2	0/1:5,4:31:9:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	127816628	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,4:31:8:0.500:2	./.	./.	./.	./.	./.	./.
chr2	127816632	rs2276579	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,8:32:15:0.533:2	0/1:4,3:32:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	127816695	rs2228955	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,14:29:33:0.424:2	./.
chr2	127819777	rs61748157	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,5:31:22:0.227:2	0/1:10,7:30:17:0.412:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	127821207	rs1137845	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,57:32:113:0.504:2	./.
chr2	127826533	rs1060743	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:63,40:29:103:0.388:2	0/1:39,17:28:56:0.304:2	./.	./.	0/1:0,86:29:87:1.00:2	./.	0/1:109,67:29:176:0.381:2	./.	./.	0/1:75,55:29:130:0.423:2	./.
chr2	127953054	rs7568070	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:54,41:29:95:0.432:2	0/1:35,29:29:64:0.453:2	0/1:0,17:29:17:1.00:2	./.	0/1:75,70:29:145:0.483:2	0/1:70,50:28:120:0.417:2	./.	0/1:82,82:29:164:0.500:2	./.	./.	0/1:66,45:29:111:0.405:2
chr2	128016878	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:30:89:0.045:2	./.	./.	./.	./.
chr2	128051206	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:31:125:0.032:2	./.	./.
chr2	128051697	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,16:28:22:0.727:2	./.	./.	./.	./.	./.
chr2	128079806	rs3732209	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,11:29:29:0.379:2	0/1:10,5:31:15:0.333:2	./.	./.	0/1:11,3:31:14:0.214:2	0/1:13,21:31:34:0.618:2	./.	0/1:17,10:31:27:0.370:2	./.	0/1:17,16:32:33:0.485:2	./.
chr2	128096571	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2	./.	./.
chr2	128180872	rs5936	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,16:33:55:0.291:2	0/1:22,22:32:44:0.500:2	./.	0/1:0,108:32:108:1.00:2	0/1:8,168:31:176:0.955:2	0/1:1,120:32:121:0.992:2	./.	0/1:72,62:32:134:0.463:2	0/1:0,99:33:99:1.00:2	0/1:38,46:32:84:0.548:2	0/1:48,46:32:94:0.489:2
chr2	128183705	rs371071104	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,61:30:143:0.430:2
chr2	128184770	rs5937	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,8:27:16:0.500:2	0/1:7,9:27:16:0.563:2	./.	./.	0/1:13,9:26:22:0.409:2	0/1:17,10:28:27:0.370:2	./.	0/1:11,12:27:23:0.522:2	./.	0/1:6,4:28:10:0.400:2	0/1:5,13:26:18:0.722:2
chr2	128185941	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:32:101:0.040:2	./.	./.
chr2	128264246	rs2078028	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	0/1:10,8:31:18:0.444:2	0/1:8,8:33:16:0.500:2
chr2	128321770	rs2404991	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,145:32:145:1.00:2	0/1:62,99:31:161:0.615:2	0/1:3,156:32:159:0.981:2	./.	0/1:5,179:32:184:0.973:2	0/1:1,143:33:144:0.993:2	./.	./.
chr2	128321776	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:177,4:32:181:0.022:2	./.	./.	./.	./.	./.	./.
chr2	128342446	rs373903901	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:31:156:0.026:2
chr2	128367092	rs777432	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:3,50:32:53:0.943:2	0/1:2,33:32:35:0.943:2	0/1:2,5:32:7:0.714:2	./.	0/1:38,24:30:62:0.387:2	./.	0/1:35,36:32:71:0.507:2	0/1:50,42:31:92:0.457:2	./.	./.	0/1:63,25:32:89:0.284:2
chr2	128379563	rs61744148	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,24:31:65:0.369:2	./.	./.	./.	./.	./.	0/1:55,25:33:80:0.313:2
chr2	128381808	rs13422424	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,19:31:42:0.452:2	./.	0/1:35,16:31:51:0.314:2	./.	./.	0/1:24,18:32:42:0.429:2	0/1:0,38:31:38:1.00:2
chr2	128384761	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,43:31:94:0.457:2	./.	./.	./.	./.	./.
chr2	128388437	rs138651379	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:32:14:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	128388790	rs13025791	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,42:32:42:1.00:2	0/1:0,23:32:23:1.00:2	0/1:2,5:31:7:0.714:2	./.	./.	./.	0/1:37,21:29:58:0.362:2	0/1:29,36:31:65:0.554:2	./.	./.	./.
chr2	128388862	rs13025959	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,64:31:64:1.00:2	0/1:0,41:31:41:1.00:2	0/1:5,5:31:10:0.500:2	./.	./.	./.	0/1:30,28:31:58:0.483:2	0/1:52,29:31:81:0.358:2	./.	./.	./.
chr2	128392242	rs199726409	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,24:31:47:0.511:2	./.	./.
chr2	128393800	rs2255161	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,55:30:55:1.00:2	0/1:0,44:30:44:1.00:2	0/1:6,8:29:14:0.571:2	./.	./.	./.	0/1:69,63:30:132:0.477:2	0/1:44,69:30:113:0.611:2	./.	./.	./.
chr2	128394955	rs11686946	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:1,60:31:61:0.984:2	0/1:0,33:30:33:1.00:2	./.	./.	./.	./.	0/1:69,27:31:96:0.281:2	0/1:62,39:31:101:0.386:2	./.	./.	./.
chr2	128397728	rs115961120	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,48:27:109:0.440:2	./.	./.	./.	./.	./.	0/1:34,29:27:63:0.460:2
chr2	128400608	rs4662751	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,9:32:19:0.474:2	0/1:55,38:31:93:0.409:2	./.	0/1:2,93:30:95:0.979:2	0/1:32,44:32:76:0.579:2	./.	0/1:3,96:32:99:0.970:2	./.	./.
chr2	128408452	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:33:119:0.034:2	./.	./.
chr2	128409337	rs35201354	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:21,13:28:34:0.382:2	0/1:11,7:31:18:0.389:2	0/1:3,3:32:6:0.500:2	./.	0/1:17,17:32:34:0.500:2	./.	./.	0/1:26,35:30:61:0.574:2	./.	./.	./.
chr2	128409338	rs34415489	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:21,13:31:34:0.382:2	0/1:11,7:31:18:0.389:2	0/1:3,3:30:6:0.500:2	./.	0/1:17,17:31:34:0.500:2	./.	./.	0/1:26,35:30:61:0.574:2	./.	./.	./.
chr2	128409419	rs13021001	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,37:29:61:0.607:2	0/1:33,23:29:56:0.411:2	0/1:42,27:30:69:0.391:2	./.	0/1:20,9:27:29:0.310:2	0/1:24,16:29:40:0.400:2
chr2	128409905	rs1047760	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,34:28:73:0.466:2	0/1:30,15:29:45:0.333:2	0/1:3,6:30:9:0.667:2	0/1:0,87:29:87:1.00:2	0/1:72,49:28:121:0.405:2	0/1:58,30:28:88:0.341:2	0/1:102,83:29:185:0.449:2	0/1:78,52:30:130:0.400:2	0/1:0,89:29:89:1.00:2	0/1:69,37:30:106:0.349:2	0/1:39,43:28:82:0.524:2
chr2	128410117	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:175,4:32:179:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr2	128460866	rs143249179	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,24:34:63:0.381:2	./.	./.
chr2	128460956	rs800859	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:32:56:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,61:32:61:1.00:2
chr2	128461248	rs17533356	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,9:32:19:0.474:2	./.	./.
chr2	128461524	rs7584783	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,12:29:33:0.364:2	0/1:18,4:34:22:0.182:2	./.	./.	0/1:24,8:31:32:0.250:2	0/1:17,12:32:29:0.414:2
chr2	128461556	rs7575478	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,12:29:35:0.343:2	0/1:17,6:32:23:0.261:2	./.	./.	0/1:23,10:31:33:0.303:2	0/1:19,10:32:29:0.345:2
chr2	128464116	rs34550770	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,13:31:25:0.520:2	./.	./.	./.	./.
chr2	128477084	rs61730415	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:12,24:31:36:0.667:2	0/1:9,7:30:16:0.438:2	./.	./.	0/1:28,18:33:46:0.391:2	./.	./.	0/1:35,17:33:53:0.327:2	./.	./.	./.
chr2	128495645	rs6754215	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,19:33:33:0.576:2	0/1:20,13:33:33:0.394:2	./.	./.	0/1:25,18:32:43:0.419:2	0/1:28,12:33:41:0.300:2	0/1:38,30:33:68:0.441:2	0/1:25,17:33:42:0.405:2	0/1:31,33:34:64:0.516:2	0/1:28,26:33:54:0.481:2	0/1:29,25:33:54:0.463:2
chr2	128522207	rs17534123	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:84,69:33:153:0.451:2	0/1:63,47:32:110:0.427:2	./.	./.	0/1:107,78:32:186:0.422:2	./.	./.	0/1:105,79:33:184:0.429:2	./.	./.	./.
chr2	128522383	rs11557685	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:85,51:30:136:0.375:2	0/1:41,18:30:59:0.305:2	./.	./.	0/1:46,41:29:87:0.471:2	./.	./.	0/1:73,83:30:156:0.532:2	./.	./.	./.
chr2	128608184	rs11556864	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,39:32:104:0.375:2	./.	./.	./.	./.
chr2	128610648	rs10210695	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:56,39:29:95:0.411:2	0/1:31,23:29:54:0.426:2	./.	./.	0/1:44,33:30:77:0.429:2	./.	./.	0/1:38,50:28:88:0.568:2	./.	0/1:40,23:30:63:0.365:2	./.
chr2	128757995	rs17015864	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,63:29:135:0.467:2	./.	./.	0/1:73,66:28:139:0.475:2	./.	0/1:68,65:29:133:0.489:2	0/1:0,89:28:89:1.00:2	0/1:62,47:27:109:0.431:2
chr2	128772486	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:34:164:0.024:2
chr2	128849114	rs4476299	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,76:32:76:1.00:2	0/1:1,64:32:65:0.985:2	0/1:1,84:31:85:0.988:2	0/1:0,71:32:71:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,49:32:49:1.00:2
chr2	128870808	rs4662775	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:32:89:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,139:32:139:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,174:33:174:1.00:2	0/1:0,103:33:103:1.00:2	0/1:0,185:33:185:1.00:2
chr2	128878014	rs4662594	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:33:43:1.00:2	0/1:0,25:33:25:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,51:33:51:1.00:2	0/1:1,36:32:37:0.973:2	0/1:0,49:32:49:1.00:2	0/1:0,29:32:29:1.00:2	0/1:1,43:32:44:0.977:2	0/1:0,45:34:45:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,46:33:46:1.00:2
chr2	128903453	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:32:139:0.029:2	./.	./.	./.
chr2	128934400	rs2290111	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,52:31:115:0.452:2	0/1:24,42:29:66:0.636:2	0/1:6,5:28:11:0.455:2	0/1:0,103:29:103:1.00:2	./.	0/1:65,51:29:116:0.440:2	./.	0/1:70,70:30:140:0.500:2	0/1:76,72:30:148:0.486:2	0/1:0,106:30:106:1.00:2	0/1:0,155:29:155:1.00:2
chr2	128939799	rs17178720	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,56:32:131:0.427:2	./.	0/1:80,44:32:124:0.355:2	0/1:68,68:31:136:0.500:2
chr2	128939817	rs1699	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:61,42:32:103:0.408:2	0/1:31,22:32:53:0.415:2	0/1:9,10:31:19:0.526:2	./.	./.	0/1:72,34:30:106:0.321:2	./.	0/1:68,49:31:117:0.419:2	./.	0/1:78,39:31:117:0.333:2	0/1:62,65:31:127:0.512:2
chr2	129025814	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,3:33:29:0.103:2	./.	./.	./.	./.	./.
chr2	129025860	rs147436494	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:90,11:30:101:0.109:2	0/1:54,12:29:66:0.182:2	0/1:22,3:31:25:0.120:2	0/1:131,23:29:154:0.149:2	./.	0/1:144,48:29:193:0.250:2	0/1:153,36:28:189:0.190:2	0/1:142,56:29:198:0.283:2	0/1:108,21:30:129:0.163:2	0/1:84,27:29:111:0.243:2	0/1:62,12:29:74:0.162:2
chr2	129025928	rs200330310	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:174,12:31:187:0.065:2	0/1:120,16:31:136:0.118:2	./.	0/1:170,17:31:187:0.091:2	./.	0/1:155,16:30:171:0.094:2	0/1:179,16:31:195:0.082:2	0/1:159,27:32:187:0.145:2	0/1:178,13:30:191:0.068:2	0/1:157,31:31:188:0.165:2	0/1:176,11:30:188:0.059:2
chr2	129026227	rs3958533	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:115,71:32:186:0.382:2	0/1:68,79:32:147:0.537:2	0/1:33,14:32:47:0.298:2	0/1:141,48:33:189:0.254:2	./.	0/1:112,79:32:191:0.414:2	0/1:103,89:32:192:0.464:2	0/1:101,83:32:184:0.451:2	0/1:122,58:33:182:0.322:2	0/1:84,80:32:164:0.488:2	0/1:63,32:32:95:0.337:2
chr2	129026249	rs200656779	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:113,68:31:181:0.376:2	0/1:67,76:31:143:0.531:2	0/1:33,15:31:48:0.313:2	./.	./.	./.	0/1:129,39:31:168:0.232:2	0/1:131,44:31:175:0.251:2	./.	./.	./.
chr2	129026345	rs199809104	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:105,20:30:125:0.160:2	0/1:57,17:31:74:0.230:2	./.	0/1:93,13:31:106:0.123:2	./.	0/1:80,28:31:108:0.259:2	0/1:81,18:31:99:0.182:2	0/1:85,27:30:112:0.241:2	0/1:96,7:31:104:0.068:2	0/1:72,19:31:91:0.209:2	0/1:40,6:29:46:0.130:2
chr2	129026358	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:97,11:30:108:0.102:2	0/1:51,7:31:58:0.121:2	./.	./.	./.	./.	0/1:84,10:33:94:0.106:2	0/1:97,8:33:105:0.076:2	./.	./.	./.
chr2	129075790	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,4:31:20:0.200:2	0/1:13,13:30:26:0.500:2	./.	./.	./.	0/1:15,5:30:20:0.250:2	./.	0/1:8,5:30:13:0.385:2
chr2	129075797	rs199993343	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,4:34:24:0.167:2	./.	0/1:19,5:32:24:0.208:2	./.	0/1:8,9:29:17:0.529:2	0/1:13,3:33:16:0.188:2
chr2	129075877	rs200979099	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,36:30:65:0.554:2	0/1:28,17:32:45:0.378:2	0/1:14,4:32:18:0.222:2	0/1:73,12:33:85:0.141:2	./.	0/1:73,32:32:105:0.305:2	0/1:75,36:32:111:0.324:2	0/1:55,59:31:114:0.518:2	0/1:78,18:33:97:0.188:2	0/1:58,28:32:86:0.326:2	0/1:68,11:33:79:0.139:2
chr2	129075961	rs61732881	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,7:27:24:0.292:2	./.	0/1:1,4:28:5:0.800:2	0/1:28,11:27:39:0.282:2	0/1:0,26:26:26:1.00:2	0/1:35,15:25:50:0.300:2	0/1:24,20:26:44:0.455:2	0/1:0,24:23:24:1.00:2	0/1:0,22:25:22:1.00:2	0/1:13,17:26:30:0.567:2	0/1:17,16:25:33:0.485:2
chr2	129076065	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.
chr2	130737901	rs199700858	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,5:29:132:0.038:2
chr2	130738031	rs200482871	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,6:32:196:0.031:2	./.
chr2	130738068	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:195,5:31:200:0.025:2	./.	./.	./.	./.	./.	./.
chr2	130738100	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:30:198:0.025:2	./.
chr2	130738163	rs144773989	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:113,76:31:189:0.402:2	0/1:126,71:32:197:0.360:2	0/1:40,19:31:59:0.322:2	0/1:55,128:31:183:0.699:2	0/1:61,133:31:194:0.686:2	0/1:62,129:31:191:0.675:2	0/1:57,135:31:192:0.703:2	0/1:74,110:31:184:0.598:2	0/1:62,131:32:193:0.679:2	0/1:136,61:31:197:0.310:2	./.
chr2	130738778	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:33:150:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	130738855	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,7:27:198:0.035:2	./.	./.	./.	./.	./.
chr2	130738858	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,6:33:199:0.030:2	./.	./.	./.
chr2	130738860	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,6:31:193:0.031:2	./.	./.	./.	./.	./.
chr2	130739462	rs67910912	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,7:32:75:0.093:2	0/1:51,7:31:58:0.121:2	./.	./.	./.	./.	./.	./.
chr2	130739463	rs72863817	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,7:34:76:0.092:2	0/1:51,7:34:58:0.121:2	./.	./.	./.	./.	./.	./.
chr2	130739577	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:33:131:0.031:2	./.
chr2	130739600	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:30:102:0.039:2	./.
chr2	130739644	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:33:68:0.060:2	./.
chr2	130739891	rs11674996	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:90,97:31:187:0.519:2	0/1:103,71:32:174:0.408:2	0/1:20,10:32:30:0.333:2	0/1:6,172:31:178:0.966:2	0/1:13,122:30:135:0.904:2	0/1:8,154:31:162:0.951:2	0/1:14,148:31:162:0.914:2	0/1:9,159:31:168:0.946:2	0/1:4,186:32:191:0.979:2	0/1:98,71:32:169:0.420:2	./.
chr2	130831904	rs201147063	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,48:33:195:0.246:2	./.	./.
chr2	130831930	rs200913020	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:160,30:32:190:0.158:2	0/1:156,37:31:193:0.192:2	0/1:67,13:31:80:0.163:2	0/1:150,42:31:192:0.219:2	0/1:163,32:32:195:0.164:2	0/1:163,32:31:195:0.164:2	0/1:164,33:32:197:0.168:2	0/1:165,35:31:200:0.175:2	0/1:175,16:32:191:0.084:2	0/1:164,30:32:194:0.155:2	0/1:156,34:31:190:0.179:2
chr2	130832020	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,18:32:187:0.096:2	./.
chr2	130832042	.	G	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:164,18:32:182:0.099:2	0/1:162,17:31:179:0.095:2	0/1:76,4:31:80:0.050:2	0/1:138,44:31:183:0.242:2	0/1:155,42:30:197:0.213:2	0/1:161,34:30:195:0.174:2	0/1:175,22:30:198:0.112:2	0/1:175,21:31:196:0.107:2	0/1:174,18:31:192:0.094:2	0/1:173,15:30:188:0.080:2	./.
chr2	130832127	rs200243409	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:135,29:32:166:0.177:2	0/1:85,18:31:103:0.175:2	./.	0/1:116,44:31:160:0.275:2	0/1:117,22:31:139:0.158:2	0/1:113,35:31:148:0.236:2	0/1:100,21:31:121:0.174:2	0/1:146,17:31:163:0.104:2	0/1:115,18:33:134:0.135:2	./.	./.
chr2	130832165	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:99,23:31:122:0.189:2	0/1:53,12:32:65:0.185:2	./.	0/1:97,21:30:118:0.178:2	./.	./.	0/1:94,17:30:111:0.153:2	0/1:105,12:30:117:0.103:2	./.	./.	./.
chr2	130832185	rs202181461	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,16:29:98:0.163:2	0/1:35,13:31:48:0.271:2	0/1:8,5:26:13:0.385:2	0/1:66,22:31:88:0.250:2	0/1:68,20:31:88:0.227:2	0/1:55,31:29:86:0.360:2	0/1:64,26:31:91:0.289:2	0/1:60,28:31:88:0.318:2	0/1:48,8:29:56:0.143:2	0/1:68,14:31:82:0.171:2	0/1:62,29:30:92:0.319:2
chr2	130832216	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,9:29:68:0.134:2	./.	./.	./.	./.	0/1:44,8:32:52:0.154:2	./.
chr2	130832256	rs376938834	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:28,7:24:35:0.200:2	0/1:31,5:27:36:0.139:2	./.	./.	0/1:42,9:26:51:0.176:2	./.	0/1:45,7:25:52:0.135:2	./.	./.	0/1:29,5:28:34:0.147:2	0/1:47,5:27:52:0.096:2
chr2	130832292	rs75775141	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,17:31:40:0.425:2	0/1:16,17:30:33:0.515:2	./.	0/1:1,23:31:24:0.958:2	0/1:54,26:30:80:0.325:2	0/1:2,24:30:26:0.923:2	0/1:49,28:29:77:0.364:2	0/1:2,33:30:35:0.943:2	0/1:1,21:32:22:0.955:2	0/1:28,16:30:44:0.364:2	0/1:55,29:31:84:0.345:2
chr2	130832358	rs201946437	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	0/1:98,12:31:110:0.109:2	./.
chr2	130832444	rs2599794	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:96,18:30:114:0.158:2	0/1:53,14:30:67:0.209:2	./.	0/1:12,44:31:56:0.786:2	0/1:115,38:31:154:0.248:2	0/1:31,33:31:64:0.516:2	0/1:124,20:32:144:0.139:2	0/1:44,20:31:64:0.313:2	0/1:33,27:31:60:0.450:2	0/1:150,12:32:162:0.074:2	./.
chr2	130832531	rs2122977	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:117,73:27:190:0.384:2	0/1:57,49:27:106:0.462:2	./.	0/1:0,182:27:182:1.00:2	0/1:132,66:28:198:0.333:2	0/1:3,185:27:188:0.984:2	0/1:117,77:27:194:0.397:2	0/1:0,132:28:132:1.00:2	0/1:0,99:29:99:1.00:2	./.	0/1:188,6:28:194:0.031:2
chr2	130832598	rs3948036	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.	./.	./.
chr2	130832873	rs201958629	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:149,41:32:190:0.216:2	0/1:145,42:31:187:0.225:2	0/1:39,21:31:60:0.350:2	0/1:142,44:30:187:0.237:2	0/1:151,41:30:192:0.214:2	0/1:135,55:31:191:0.289:2	0/1:142,52:31:194:0.268:2	0/1:89,95:31:184:0.516:2	0/1:119,62:32:181:0.343:2	0/1:133,52:31:185:0.281:2	0/1:158,34:31:192:0.177:2
chr2	130832887	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:186,9:33:195:0.046:2	./.	./.	./.	./.	./.	./.
chr2	130832927	rs201630632	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:141,44:28:185:0.238:2	0/1:150,41:27:191:0.215:2	./.	./.	./.	./.	./.	0/1:131,59:29:190:0.311:2	./.	0/1:161,33:29:194:0.170:2	./.
chr2	130832929	rs373944612	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,7:31:194:0.036:2	./.	./.	./.	./.
chr2	130833050	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:187,7:31:194:0.036:2	./.	./.	./.	./.	0/1:189,6:30:195:0.031:2	./.
chr2	130833091	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,10:30:140:0.072:2	./.
chr2	130833096	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,10:29:143:0.070:2	./.
chr2	130833115	.	T	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:179,5:32:184:0.027:2	0/1:148,4:32:152:0.026:2	./.	./.	0/1:142,6:32:149:0.041:2	./.	0/1:118,4:31:123:0.033:2	0/1:113,5:31:118:0.042:2	0/1:118,7:30:125:0.056:2	0/1:122,16:32:138:0.116:2	./.
chr2	130833120	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:173,5:32:178:0.028:2	0/1:146,7:33:153:0.046:2	./.	0/1:190,4:33:194:0.021:2	./.	./.	0/1:101,5:28:106:0.047:2	0/1:105,5:32:110:0.045:2	0/1:121,7:32:128:0.055:2	0/1:129,9:33:139:0.065:2	./.
chr2	130843447	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:178,11:33:190:0.058:2	0/1:181,17:32:198:0.086:2	0/1:102,13:32:115:0.113:2	0/1:143,21:33:164:0.128:2	0/1:178,15:34:193:0.078:2	0/1:126,12:32:138:0.087:2	0/1:179,18:33:198:0.091:2	0/1:115,22:32:137:0.161:2	0/1:144,25:34:169:0.148:2	0/1:181,12:33:193:0.062:2	0/1:186,7:33:193:0.036:2
chr2	130843529	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.
chr2	130843559	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.
chr2	130845666	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:48,9:34:57:0.158:2	0/1:22,11:33:33:0.333:2	./.	0/1:19,28:33:47:0.596:2	./.	0/1:31,24:33:55:0.436:2	0/1:11,5:33:16:0.313:2	0/1:34,4:34:38:0.105:2	0/1:34,29:34:64:0.460:2	./.	./.
chr2	130851048	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:138,9:32:147:0.061:2	./.	0/1:133,8:32:141:0.057:2	0/1:167,8:32:175:0.046:2	0/1:138,6:33:144:0.042:2	0/1:147,8:32:155:0.052:2	./.	./.
chr2	130857122	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:161,31:32:192:0.161:2	0/1:175,22:32:197:0.112:2	0/1:119,19:32:138:0.138:2	0/1:146,51:33:197:0.259:2	0/1:163,35:33:198:0.177:2	0/1:165,32:33:197:0.162:2	0/1:178,22:33:200:0.110:2	0/1:178,18:33:196:0.092:2	0/1:172,24:34:196:0.122:2	0/1:155,43:32:198:0.217:2	0/1:164,30:33:194:0.155:2
chr2	130869585	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:30:119:0.034:2	0/1:100,8:30:108:0.074:2	./.	./.	./.
chr2	130869597	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,5:28:95:0.053:2	./.	./.	./.	./.	./.	./.	./.
chr2	130869609	rs62163064	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:149,28:33:177:0.158:2	0/1:98,25:32:123:0.203:2	./.	0/1:2,47:32:49:0.959:2	0/1:72,20:32:92:0.217:2	0/1:1,67:32:68:0.985:2	0/1:79,22:33:101:0.218:2	0/1:1,48:32:49:0.980:2	0/1:0,58:34:58:1.00:2	0/1:159,13:32:172:0.076:2	./.
chr2	130877584	rs201936889	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:172,7:32:179:0.039:2	0/1:168,10:32:178:0.056:2	./.	0/1:9,30:30:39:0.769:2	0/1:191,7:30:198:0.035:2	0/1:7,26:29:33:0.788:2	./.	0/1:13,25:29:38:0.658:2	0/1:3,35:30:38:0.921:2	./.	./.
chr2	130877593	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,5:28:60:0.083:2	./.	0/1:48,9:29:57:0.158:2	0/1:187,9:32:196:0.046:2	./.	0/1:49,4:27:53:0.075:2	0/1:185,7:33:192:0.036:2	./.
chr2	130877604	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,5:28:77:0.065:2	./.	0/1:61,6:30:67:0.090:2	0/1:188,5:32:193:0.026:2	./.	./.	./.	./.
chr2	130877618	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,3:35:82:0.037:2	./.	0/1:74,11:32:85:0.129:2	./.	./.	./.
chr2	130877711	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,6:27:177:0.034:2
chr2	130877752	rs77273091	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:96,60:29:156:0.385:2	0/1:51,54:29:105:0.514:2	./.	0/1:5,155:30:160:0.969:2	0/1:75,98:30:173:0.566:2	0/1:1,154:30:155:0.994:2	0/1:80,76:29:156:0.487:2	0/1:1,163:29:164:0.994:2	0/1:0,143:30:143:1.00:2	0/1:87,89:29:176:0.506:2	0/1:161,13:29:174:0.075:2
chr2	130877782	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:31:175:0.023:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	130877802	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,5:28:173:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	130877892	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:150,14:30:165:0.085:2	0/1:101,9:32:110:0.082:2	./.	0/1:165,13:30:178:0.073:2	0/1:173,16:31:189:0.085:2	./.	0/1:177,7:30:185:0.038:2	0/1:169,13:30:182:0.071:2	0/1:146,9:32:155:0.058:2	0/1:148,15:31:163:0.092:2	./.
chr2	130877893	rs375216280	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:155,7:32:163:0.043:2	0/1:106,6:32:112:0.054:2	./.	./.	./.	0/1:184,6:31:190:0.032:2	0/1:178,5:30:183:0.027:2	./.	0/1:151,4:32:155:0.026:2	0/1:160,6:32:166:0.036:2	0/1:122,5:27:127:0.039:2
chr2	130877913	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:157,7:29:165:0.043:2	./.	./.	0/1:181,7:24:188:0.037:2	./.	0/1:182,6:26:188:0.032:2	./.	./.	./.	0/1:175,5:30:180:0.028:2	./.
chr2	130877920	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,6:29:164:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	130877921	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,7:31:162:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	130877956	rs200786675	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:92,83:29:175:0.474:2	./.	./.	./.	./.	./.	./.
chr2	130877985	rs138589307	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,5:30:179:0.028:2	0/1:165,5:29:171:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	130878058	rs201109823	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,51:31:186:0.274:2	./.
chr2	130897218	rs13006246	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:78,42:29:120:0.350:2	0/1:60,41:27:101:0.406:2	./.	0/1:80,61:29:141:0.433:2	./.	./.	0/1:124,59:28:183:0.322:2	0/1:3,160:28:163:0.982:2	0/1:3,133:29:136:0.978:2	./.	./.
chr2	130897234	rs3177472	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,80:31:146:0.548:2	0/1:112,76:31:188:0.404:2	0/1:2,176:31:178:0.989:2	0/1:181,4:32:185:0.022:2	./.	./.	0/1:70,73:31:143:0.510:2	./.
chr2	130897620	rs76485676	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,8:31:46:0.174:2	0/1:31,11:30:42:0.262:2	0/1:2,20:33:22:0.909:2	./.	./.	./.	0/1:40,17:31:57:0.298:2	./.
chr2	130897665	rs202218049	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,3:33:58:0.052:2	./.	./.	./.	./.	./.	./.	./.
chr2	130898757	rs187030331	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,8:30:113:0.071:2	./.	0/1:159,4:32:163:0.025:2	./.	./.	0/1:124,6:29:130:0.046:2	0/1:170,19:32:189:0.101:2
chr2	130898813	rs142452531	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:102,20:31:122:0.164:2	0/1:69,7:31:76:0.092:2	./.	0/1:105,24:32:129:0.186:2	./.	./.	./.	0/1:6,35:31:41:0.854:2	0/1:2,33:32:35:0.943:2	./.	./.
chr2	130899791	rs141892357	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,15:31:54:0.278:2	./.	0/1:129,46:31:175:0.263:2	./.	./.	./.	./.	./.	0/1:105,29:30:134:0.216:2
chr2	130899804	rs138331089	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:89,55:27:144:0.382:2	0/1:57,36:28:93:0.387:2	0/1:34,5:29:39:0.128:2	0/1:4,122:27:126:0.968:2	0/1:82,58:26:140:0.414:2	0/1:1,115:26:116:0.991:2	0/1:76,34:26:110:0.309:2	0/1:0,95:27:95:1.00:2	0/1:0,69:27:70:1.00:2	0/1:0,55:26:56:1.00:2	0/1:87,47:25:134:0.351:2
chr2	130900498	rs184667955	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,39:30:116:0.339:2	./.
chr2	130900537	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:33:120:0.033:2	./.
chr2	130902052	rs7569956	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:84,5:33:89:0.056:2	0/1:56,9:32:65:0.138:2	./.	0/1:96,19:32:115:0.165:2	./.	0/1:77,9:33:86:0.105:2	./.	./.	./.	./.	./.
chr2	130902067	rs60089935	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,46:30:125:0.368:2	0/1:40,35:30:75:0.467:2	0/1:12,85:30:97:0.876:2	0/1:47,42:30:89:0.472:2	./.	./.	./.	./.
chr2	130902194	rs60152285	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:122,66:31:188:0.351:2	0/1:132,55:31:187:0.294:2	0/1:75,117:31:192:0.609:2	0/1:134,57:31:191:0.298:2	./.	./.	0/1:89,49:32:138:0.355:2	./.
chr2	130902549	rs34080706	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:32:5:0.800:2	./.	0/1:2,3:29:5:0.600:2	./.	./.	./.	./.	./.
chr2	130910682	rs143470110	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:32:166:0.024:2	./.	./.	./.
chr2	130911381	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:166,10:31:177:0.057:2	0/1:170,8:31:178:0.045:2	./.	0/1:189,6:32:195:0.031:2	./.	0/1:174,6:31:180:0.033:2	./.	./.	./.	./.	./.
chr2	130912696	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:134,4:31:138:0.029:2	./.	./.	./.	./.	./.	./.
chr2	130912720	rs80067546	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,15:34:88:0.170:2	./.
chr2	130912778	rs149268431	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,8:32:94:0.085:2	./.
chr2	130912789	rs148027738	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,6:32:98:0.061:2	./.
chr2	130918834	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:33:74:0.054:2
chr2	130925088	rs10909567	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,29:31:70:0.414:2	0/1:41,47:31:88:0.534:2	0/1:0,63:31:63:1.00:2	0/1:35,45:30:80:0.563:2	./.	./.	./.	./.
chr2	130925160	rs200256360	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,9:20:81:0.111:2	./.	./.	./.	./.	./.	0/1:29,6:25:35:0.171:2
chr2	130929987	rs145875881	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,75:32:157:0.481:2	./.	./.	./.	./.	./.	./.
chr2	130930189	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,7:32:199:0.035:2	./.	0/1:182,5:32:187:0.027:2	./.	./.	./.	./.	./.
chr2	130930935	rs2443637	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:140,5:30:145:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr2	130939163	rs146359515	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,8:30:20:0.400:2	./.	./.	./.	./.	./.	./.	./.
chr2	130939348	rs1817097	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,18:29:27:0.667:2	0/1:21,10:29:31:0.323:2	0/1:0,23:29:23:1.00:2	0/1:18,11:29:29:0.379:2	./.	./.	./.	./.
chr2	130939381	rs192840659	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,12:29:15:0.800:2	./.
chr2	130948087	rs71422855	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,23:30:46:0.500:2	./.	./.	./.	./.
chr2	130949411	rs10208844	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:31:76:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,102:30:102:1.00:2	0/1:39,26:29:65:0.400:2	0/1:0,69:30:69:1.00:2	0/1:0,72:30:72:1.00:2	0/1:0,91:30:91:1.00:2	0/1:0,88:31:88:1.00:2	0/1:0,56:30:56:1.00:2	0/1:0,75:30:75:1.00:2
chr2	130949462	rs1052456	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,6:30:169:0.036:2	./.	./.	./.	./.
chr2	130949491	rs60154251	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:76,51:31:127:0.402:2	0/1:40,15:31:55:0.273:2	./.	0/1:87,46:31:133:0.346:2	0/1:98,31:29:129:0.240:2	0/1:1,97:31:98:0.990:2	0/1:105,72:31:177:0.407:2	./.	./.	./.	./.
chr2	130949511	rs138838108	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,59:31:130:0.454:2	./.
chr2	130949553	rs1052422	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:77,32:30:109:0.294:2	0/1:36,21:28:57:0.368:2	./.	0/1:77,31:31:108:0.287:2	0/1:77,16:29:93:0.172:2	0/1:0,49:30:51:1.00:2	0/1:91,24:31:115:0.209:2	./.	./.	./.	./.
chr2	130951375	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,10:19:63:0.159:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	130951395	rs188142199	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:31:136:0.029:2	./.	./.	./.
chr2	130951428	rs143310442	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:155,24:25:179:0.134:2	./.	./.	./.	./.	./.	0/1:110,21:26:131:0.160:2
chr2	130951488	rs2443644	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:156,37:26:193:0.192:2	./.	./.	./.	./.	./.	0/1:132,41:29:173:0.237:2
chr2	130951548	rs1052319	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,87:32:89:0.978:2	0/1:0,53:31:53:1.00:2	0/1:0,22:32:22:1.00:2	0/1:3,137:32:140:0.979:2	0/1:73,87:31:161:0.544:2	0/1:2,80:31:82:0.976:2	0/1:3,117:32:120:0.975:2	0/1:4,180:32:184:0.978:2	0/1:1,174:33:176:0.994:2	0/1:1,96:32:97:0.990:2	0/1:74,101:32:175:0.577:2
chr2	130951566	rs7340193	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,89:31:92:0.967:2	0/1:1,57:31:58:0.983:2	0/1:0,22:31:22:1.00:2	0/1:3,132:31:135:0.978:2	0/1:75,95:31:170:0.559:2	0/1:2,73:31:75:0.973:2	0/1:4,127:31:131:0.969:2	0/1:4,180:31:184:0.978:2	0/1:1,172:32:173:0.994:2	0/1:1,90:32:91:0.989:2	0/1:70,107:31:178:0.605:2
chr2	130951581	rs1052312	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:59,20:31:79:0.253:2	0/1:45,19:28:64:0.297:2	./.	0/1:95,28:29:123:0.228:2	0/1:151,17:30:168:0.101:2	0/1:2,36:30:38:0.947:2	0/1:113,20:30:133:0.150:2	./.	./.	0/1:69,20:29:89:0.225:2	./.
chr2	130951584	rs7340507	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:59,22:27:81:0.272:2	0/1:46,18:27:64:0.281:2	./.	0/1:97,28:29:125:0.224:2	0/1:154,17:29:171:0.099:2	0/1:2,35:29:37:0.946:2	0/1:113,19:29:132:0.144:2	./.	./.	0/1:69,20:29:89:0.225:2	./.
chr2	130951599	rs149164713	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:131,4:33:135:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr2	130951638	rs141240951	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:122,11:28:133:0.083:2	0/1:93,5:33:98:0.051:2	./.	0/1:148,14:31:162:0.086:2	./.	0/1:139,15:31:155:0.097:2	./.	./.	./.	./.	./.
chr2	130951754	rs13000249	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:129,55:32:184:0.299:2	0/1:97,23:30:120:0.192:2	./.	0/1:147,39:32:186:0.210:2	0/1:162,35:31:197:0.178:2	0/1:50,122:32:172:0.709:2	0/1:135,53:32:188:0.282:2	./.	./.	./.	./.
chr2	130951848	rs2259488	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:101,34:31:135:0.252:2	0/1:88,23:31:111:0.207:2	./.	0/1:138,40:32:178:0.225:2	0/1:116,21:30:137:0.153:2	0/1:1,76:32:78:0.987:2	0/1:151,28:31:179:0.156:2	./.	0/1:191,5:33:196:0.026:2	./.	0/1:167,13:31:180:0.072:2
chr2	130951949	rs62165074	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:104,74:31:179:0.416:2	0/1:73,49:31:122:0.402:2	./.	0/1:101,90:31:192:0.471:2	0/1:127,67:30:194:0.345:2	0/1:2,179:30:181:0.989:2	0/1:122,72:31:195:0.371:2	./.	./.	./.	./.
chr2	130952038	rs13000721	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:65,28:29:94:0.301:2	0/1:46,36:30:82:0.439:2	./.	0/1:92,36:29:128:0.281:2	0/1:101,33:29:134:0.246:2	0/1:1,83:29:84:0.988:2	0/1:85,30:29:115:0.261:2	./.	./.	./.	./.
chr2	130952718	rs3853852	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:116,36:32:152:0.237:2	0/1:62,31:31:93:0.333:2	./.	0/1:105,35:31:140:0.250:2	0/1:137,28:32:165:0.170:2	0/1:6,88:31:94:0.936:2	0/1:118,43:32:161:0.267:2	./.	./.	./.	./.
chr2	130952725	rs3863907	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:106,35:31:141:0.248:2	0/1:59,29:31:88:0.330:2	./.	0/1:101,43:31:144:0.299:2	0/1:135,31:31:166:0.187:2	0/1:2,88:31:90:0.978:2	0/1:117,49:31:166:0.295:2	./.	./.	0/1:103,54:31:157:0.344:2	0/1:183,6:28:189:0.032:2
chr2	130953795	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,9:30:187:0.048:2	0/1:116,8:27:124:0.065:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	130955921	rs148496168	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:134,6:30:140:0.043:2	./.	./.	./.	./.	./.	0/1:147,17:30:164:0.104:2
chr2	130955925	rs142819527	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:137,6:32:144:0.042:2	./.	./.	./.	./.	./.	0/1:144,16:31:165:0.100:2
chr2	130955951	rs116389436	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:130,6:28:136:0.044:2	./.	./.	./.	./.	./.	0/1:131,17:30:148:0.115:2
chr2	131097247	rs55684765	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,64:32:151:0.424:2	0/1:69,48:32:117:0.410:2	./.
chr2	131097253	rs56017827	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,68:31:161:0.422:2	0/1:69,49:29:118:0.415:2	./.
chr2	131100496	rs11542416	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,42:34:93:0.452:2	0/1:75,56:33:131:0.427:2	./.
chr2	131100734	rs11542411	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,11:31:18:0.611:2	0/1:4,8:31:12:0.667:2	./.
chr2	131103635	rs11542415	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,84:30:172:0.488:2	./.	./.	./.	./.	./.	./.	./.
chr2	131128201	rs1533567	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:193,5:32:198:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr2	131128204	rs1533566	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,6:31:198:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr2	131130498	.	T	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,13:14:104:0.125:2	0/1:76,14:16:90:0.156:2	0/1:81,17:10:98:0.173:2	0/1:86,12:15:98:0.122:2	0/1:64,13:13:77:0.169:2	0/1:56,9:17:65:0.138:2	0/1:72,14:15:86:0.163:2
chr2	131220431	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:31:112:0.036:2	./.
chr2	131220502	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,10:31:40:0.250:2	0/1:19,6:30:25:0.240:2	./.	0/1:34,14:31:48:0.292:2	0/1:46,5:31:51:0.098:2	0/1:37,15:32:52:0.288:2	0/1:35,6:31:41:0.146:2	0/1:37,8:31:45:0.178:2	0/1:44,10:31:54:0.185:2	0/1:37,10:29:47:0.213:2	0/1:45,9:31:54:0.167:2
chr2	131220544	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	131220592	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,8:33:104:0.077:2	./.
chr2	131220614	rs201238433	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:98,7:32:105:0.067:2	0/1:62,7:32:69:0.101:2	./.	0/1:137,20:31:157:0.127:2	0/1:111,41:31:152:0.270:2	0/1:121,33:31:154:0.214:2	0/1:142,26:31:168:0.155:2	0/1:138,13:32:151:0.086:2	0/1:128,13:32:141:0.092:2	0/1:111,10:33:121:0.083:2	./.
chr2	131220699	rs199773105	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,10:32:95:0.105:2	./.	0/1:90,15:30:105:0.143:2	0/1:91,10:31:101:0.099:2	0/1:96,10:32:106:0.094:2	0/1:85,4:33:89:0.045:2	./.	./.
chr2	131220737	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,6:30:90:0.067:2	0/1:88,7:32:95:0.074:2	./.	./.	./.
chr2	131220828	rs190931019	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,4:31:6:0.667:2	0/1:1,2:34:3:0.667:2	./.	0/1:2,6:32:8:0.750:2	0/1:5,5:32:10:0.500:2	./.	0/1:0,5:30:5:1.00:2	0/1:3,3:33:6:0.500:2	0/1:0,2:33:2:1.00:2	./.	0/1:0,4:27:4:1.00:2
chr2	131220830	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,4:28:10:0.400:2	./.	./.	./.	./.	0/1:3,5:28:8:0.625:2	./.
chr2	131220831	rs201878083	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,4:27:6:0.667:2	0/1:1,3:28:4:0.750:2	./.	0/1:2,8:28:10:0.800:2	0/1:1,9:28:10:0.900:2	0/1:14,4:28:19:0.222:2	0/1:0,4:24:4:1.00:2	0/1:6,4:29:10:0.400:2	./.	0/1:2,7:30:9:0.778:2	0/1:2,4:27:6:0.667:2
chr2	131220864	rs147268452	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,12:31:32:0.387:2	0/1:17,5:32:22:0.227:2	./.	0/1:32,16:32:48:0.333:2	0/1:23,11:30:34:0.324:2	0/1:30,11:30:41:0.268:2	0/1:14,22:31:36:0.611:2	0/1:27,17:31:44:0.386:2	0/1:16,12:32:28:0.429:2	0/1:16,7:27:23:0.304:2	0/1:12,12:30:24:0.500:2
chr2	131220961	.	T	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:129,19:31:148:0.128:2	0/1:74,7:32:81:0.086:2	./.	0/1:174,19:31:193:0.098:2	0/1:193,7:33:200:0.035:2	0/1:175,20:32:195:0.103:2	0/1:149,41:31:190:0.216:2	0/1:187,8:31:195:0.041:2	0/1:168,14:35:182:0.077:2	./.	./.
chr2	131220971	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,3:33:28:0.107:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	131221102	rs139258542	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,61:29:98:0.622:2	0/1:27,40:29:67:0.597:2	0/1:4,9:30:13:0.692:2	0/1:64,80:28:144:0.556:2	0/1:42,86:28:128:0.672:2	0/1:58,74:29:132:0.561:2	0/1:54,103:29:159:0.656:2	0/1:71,101:29:172:0.587:2	0/1:49,66:30:115:0.574:2	0/1:28,82:29:110:0.745:2	0/1:61,46:30:107:0.430:2
chr2	131221103	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:123,6:32:129:0.047:2	./.	./.	./.	./.	0/1:106,6:32:112:0.054:2	./.
chr2	131221170	rs144934754	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,72:31:88:0.818:2	0/1:13,42:31:55:0.764:2	0/1:1,6:30:7:0.857:2	0/1:27,82:31:109:0.752:2	0/1:18,71:31:89:0.798:2	0/1:33,82:30:115:0.713:2	0/1:35,88:31:123:0.715:2	0/1:44,96:31:140:0.686:2	0/1:77,36:31:114:0.319:2	0/1:20,86:31:106:0.811:2	0/1:29,67:31:96:0.698:2
chr2	131221226	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,20:31:135:0.148:2	./.	./.	./.	./.
chr2	131221445	rs201589859	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:132,49:30:181:0.271:2	0/1:82,43:31:125:0.344:2	0/1:17,5:31:22:0.227:2	0/1:118,48:30:166:0.289:2	0/1:133,34:30:167:0.204:2	0/1:123,47:30:170:0.276:2	0/1:101,44:30:145:0.303:2	0/1:147,34:30:181:0.188:2	0/1:145,33:31:178:0.185:2	0/1:168,24:31:192:0.125:2	0/1:99,51:31:150:0.340:2
chr2	131221499	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:179,7:33:186:0.038:2	0/1:132,6:34:138:0.043:2	./.	0/1:182,6:31:188:0.032:2	0/1:186,9:31:195:0.046:2	0/1:160,14:34:174:0.080:2	0/1:154,9:34:163:0.055:2	./.	0/1:176,6:34:182:0.033:2	./.	0/1:191,5:33:196:0.026:2
chr2	131221560	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:136,20:32:156:0.128:2	0/1:115,14:32:129:0.109:2	./.	./.	./.	./.	./.	0/1:127,20:32:147:0.136:2	./.	0/1:144,12:32:156:0.077:2	./.
chr2	131221600	rs199697413	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,11:31:62:0.177:2	./.	./.	./.	./.	0/1:79,19:33:98:0.194:2	./.
chr2	131221622	rs201809436	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,32:31:67:0.478:2	./.	./.	./.	./.	0/1:57,60:31:117:0.513:2	./.
chr2	131221626	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:29:78:0.051:2	./.	./.	./.
chr2	131221654	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:31:35:0.114:2	./.	./.	./.
chr2	131221662	rs200726249	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,4:31:20:0.200:2	./.	./.	./.	0/1:19,4:32:23:0.174:2	./.	./.	./.
chr2	131221663	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,4:33:56:0.071:2	./.	./.	0/1:14,4:31:18:0.222:2	./.	0/1:106,5:31:111:0.045:2	0/1:7,6:33:13:0.462:2
chr2	131221668	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,5:32:56:0.089:2	./.	./.	./.	./.	./.	0/1:1,3:34:4:0.750:2
chr2	131221687	rs201536060	A	C,T	.	PASS	AC=1,1;AF=0.167,0.167;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant10	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/2:34:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:29:2:1.00:2	./.	./.
chr2	131221692	rs79602835	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,2:35:4:0.500:2	./.	./.	./.	0/1:54,4:31:58:0.069:2	0/1:8,3:35:11:0.273:2	./.	0/1:8,3:32:11:0.273:2	./.	./.	0/1:2,4:34:6:0.667:2
chr2	131221704	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,6:28:10:0.600:2	./.	./.	./.	./.	./.
chr2	131232011	rs202069604	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:106,90:33:196:0.459:2	0/1:138,60:33:198:0.303:2	0/1:63,41:32:105:0.394:2	0/1:134,65:33:199:0.327:2	0/1:118,78:32:196:0.398:2	0/1:127,70:32:197:0.355:2	0/1:126,69:32:195:0.354:2	0/1:118,78:32:196:0.398:2	0/1:131,66:34:197:0.335:2	0/1:131,67:33:198:0.338:2	0/1:122,76:33:198:0.384:2
chr2	131234265	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:32:75:0.053:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	131234282	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:125,4:33:129:0.031:2	./.	./.	0/1:102,6:32:108:0.056:2	0/1:32,6:32:39:0.158:2	0/1:94,5:32:99:0.051:2	0/1:35,5:31:40:0.125:2	./.	./.	./.	0/1:190,4:34:194:0.021:2
chr2	131245713	rs201745094	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:128,57:32:185:0.308:2	0/1:144,49:32:194:0.254:2	0/1:76,25:32:101:0.248:2	0/1:145,55:32:200:0.275:2	0/1:101,84:31:185:0.454:2	0/1:147,48:31:195:0.246:2	0/1:182,13:31:195:0.067:2	0/1:173,21:32:194:0.108:2	0/1:156,41:33:197:0.208:2	0/1:100,91:32:191:0.476:2	0/1:150,45:32:195:0.231:2
chr2	131258188	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:184,9:31:193:0.047:2	0/1:122,11:29:133:0.083:2	0/1:69,6:32:75:0.080:2	0/1:178,10:28:188:0.053:2	0/1:126,13:32:139:0.094:2	0/1:177,10:29:188:0.053:2	0/1:120,6:33:126:0.048:2	0/1:174,15:30:189:0.079:2	0/1:166,24:31:190:0.126:2	0/1:180,10:32:190:0.053:2	0/1:168,23:32:191:0.120:2
chr2	131261429	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:192,5:31:197:0.025:2	./.	./.	0/1:192,6:30:198:0.030:2	./.	./.	./.	./.	./.	./.	0/1:193,5:30:198:0.025:2
chr2	131266502	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:31:147:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,6:30:171:0.035:2
chr2	131266530	rs10737928	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,164:32:164:1.00:2	0/1:0,115:31:115:1.00:2	0/1:0,64:31:65:1.00:2	0/1:1,180:32:182:0.994:2	0/1:46,138:31:187:0.750:2	0/1:0,171:31:172:1.00:2	0/1:1,176:31:178:0.994:2	./.	0/1:1,175:32:176:0.994:2	0/1:52,129:32:181:0.713:2	0/1:1,170:32:171:0.994:2
chr2	131266584	rs28754532	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:170,17:30:187:0.091:2	./.	./.	./.	./.	0/1:160,24:30:184:0.130:2	./.
chr2	131266613	rs28624496	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,8:29:185:0.043:2	./.
chr2	131266652	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:171,9:27:180:0.050:2	./.	./.	./.	./.	0/1:180,8:31:189:0.043:2	./.
chr2	131266662	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:178,11:24:189:0.058:2	./.	./.	./.	./.	0/1:179,9:27:189:0.048:2	./.
chr2	131266724	rs200614085	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:166,6:31:172:0.035:2	./.	./.	./.	0/1:184,6:30:190:0.032:2	./.	./.	./.	0/1:189,4:33:193:0.021:2	./.	./.
chr2	131266746	rs62163654	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:160,33:30:193:0.171:2	./.	./.	./.	0/1:140,37:33:177:0.209:2	0/1:142,39:31:181:0.215:2	./.
chr2	131280812	rs200159465	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:106,38:30:144:0.264:2	./.	./.	./.	./.	0/1:83,37:31:120:0.308:2	./.
chr2	131303879	rs377645897	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,7:25:11:0.700:2	./.	./.	0/1:6,7:29:15:0.538:2	0/1:19,4:31:24:0.174:2	0/1:4,5:30:11:0.556:2	0/1:13,3:29:17:0.188:2	./.	0/1:0,2:34:2:1.00:2	0/1:4,4:28:10:0.500:2	0/1:6,10:30:17:0.625:2
chr2	131328544	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	131355106	rs199715380	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,22:31:100:0.220:2	./.	./.	./.	./.	0/1:97,29:31:126:0.230:2	./.
chr2	131369161	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,5:30:190:0.026:2	./.	./.	./.	./.
chr2	131369168	rs201816861	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:156,36:29:192:0.188:2	./.	./.	./.	0/1:150,41:32:191:0.215:2	0/1:143,44:31:187:0.235:2	./.
chr2	131369190	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:163,7:31:170:0.041:2	0/1:174,6:31:180:0.033:2	./.	0/1:179,5:32:184:0.027:2	0/1:182,5:32:188:0.027:2	0/1:179,5:32:185:0.027:2	./.	./.	0/1:185,4:32:189:0.021:2	./.	0/1:158,6:33:164:0.037:2
chr2	131369219	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,6:32:173:0.035:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	131369252	rs199869890	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:175,11:26:186:0.059:2	./.	./.	./.	./.	0/1:170,20:26:190:0.105:2	./.
chr2	131369262	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:175,7:29:182:0.038:2	./.	./.	./.	0/1:180,9:30:189:0.048:2	./.	./.	./.	./.	0/1:174,17:31:191:0.089:2	0/1:180,5:30:186:0.027:2
chr2	131369273	.	A	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:159,17:33:179:0.097:2	0/1:160,13:31:173:0.075:2	0/1:40,4:32:44:0.091:2	0/1:171,15:31:186:0.081:2	./.	0/1:178,10:32:188:0.053:2	0/1:185,6:33:192:0.031:2	0/1:171,13:32:185:0.071:2	0/1:182,4:33:186:0.022:2	./.	0/1:178,11:32:189:0.058:2
chr2	131369330	rs374649517	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,5:31:181:0.028:2	./.	./.	./.	./.	./.	./.	./.	0/1:177,5:31:182:0.027:2	./.
chr2	131374401	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:172,4:32:176:0.023:2	./.	0/1:180,6:31:186:0.032:2	./.	0/1:190,8:31:198:0.040:2	./.	./.	0/1:189,5:33:194:0.026:2	./.	./.
chr2	131390121	rs202134345	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:133,58:32:191:0.304:2	0/1:134,58:32:192:0.302:2	0/1:63,17:31:80:0.213:2	0/1:118,73:32:191:0.382:2	0/1:105,74:32:181:0.413:2	0/1:130,55:32:185:0.297:2	0/1:166,30:32:196:0.153:2	0/1:179,14:31:193:0.073:2	0/1:129,64:33:193:0.332:2	0/1:90,105:32:195:0.538:2	0/1:143,57:32:200:0.285:2
chr2	131403752	rs202202280	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:184,10:32:194:0.052:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:28:196:0.026:2	./.
chr2	131403823	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:122,67:33:189:0.354:2	0/1:123,59:33:182:0.324:2	0/1:37,26:31:63:0.413:2	0/1:126,68:33:194:0.351:2	0/1:129,54:32:183:0.295:2	0/1:124,65:32:189:0.344:2	0/1:108,61:32:169:0.361:2	0/1:122,73:32:195:0.374:2	0/1:127,59:33:186:0.317:2	0/1:121,69:33:190:0.363:2	0/1:122,65:33:187:0.348:2
chr2	131414158	rs117510452	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,18:33:188:0.096:2	0/1:153,36:33:189:0.190:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	131414176	rs62165276	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:84,106:32:190:0.558:2	0/1:93,90:32:183:0.492:2	0/1:48,41:31:89:0.461:2	0/1:97,94:31:191:0.492:2	0/1:61,122:31:183:0.667:2	0/1:101,99:31:200:0.495:2	0/1:92,93:31:187:0.503:2	0/1:104,92:31:196:0.469:2	0/1:102,96:32:198:0.485:2	0/1:59,124:32:183:0.678:2	0/1:96,102:32:198:0.515:2
chr2	131414239	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,20:33:194:0.104:2	./.
chr2	131414279	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,10:32:196:0.051:2	./.
chr2	131414338	rs201265731	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,40:31:193:0.207:2	./.	./.	./.	./.
chr2	131414380	rs200995491	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,77:31:156:0.497:2	./.	./.	./.	./.	./.	./.
chr2	131414394	rs200109207	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:148,39:28:187:0.209:2	0/1:134,28:29:162:0.173:2	0/1:30,8:31:38:0.211:2	0/1:151,37:29:188:0.197:2	0/1:112,39:28:151:0.258:2	0/1:162,28:29:190:0.147:2	0/1:159,34:30:195:0.176:2	0/1:151,43:29:194:0.222:2	0/1:137,34:29:171:0.199:2	0/1:90,44:29:134:0.328:2	0/1:141,41:28:182:0.225:2
chr2	131414431	rs201034632	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:178,13:26:191:0.068:2	0/1:146,13:27:159:0.082:2	./.	0/1:172,9:28:181:0.050:2	0/1:151,17:27:168:0.101:2	0/1:173,6:29:179:0.034:2	0/1:185,7:28:192:0.036:2	./.	0/1:179,8:28:189:0.043:2	0/1:113,16:25:130:0.124:2	0/1:171,15:27:187:0.081:2
chr2	131414669	.	G	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:121,18:32:139:0.129:2	0/1:61,6:32:67:0.090:2	./.	0/1:136,17:31:153:0.111:2	0/1:60,21:31:81:0.259:2	0/1:147,13:31:160:0.081:2	0/1:141,15:32:156:0.096:2	0/1:142,6:31:148:0.041:2	0/1:114,5:31:119:0.042:2	0/1:70,18:31:88:0.205:2	0/1:116,11:30:127:0.087:2
chr2	131414736	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,10:31:108:0.093:2	./.	./.	./.	./.	./.	./.
chr2	131414737	.	A	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:62,56:28:118:0.475:2	0/1:49,28:28:77:0.364:2	./.	0/1:81,67:28:148:0.453:2	0/1:43,63:29:107:0.594:2	0/1:100,69:29:169:0.408:2	0/1:100,49:27:149:0.329:2	0/1:76,57:28:133:0.429:2	0/1:76,53:29:129:0.411:2	0/1:37,39:26:76:0.513:2	0/1:69,27:28:96:0.281:2
chr2	131414878	rs201354416	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:162,14:31:176:0.080:2	0/1:80,4:30:84:0.048:2	./.	0/1:164,18:32:182:0.099:2	0/1:176,13:31:190:0.069:2	0/1:162,13:32:175:0.074:2	0/1:139,36:31:175:0.206:2	0/1:186,9:31:195:0.046:2	0/1:169,15:34:184:0.082:2	./.	./.
chr2	131414975	.	A	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:66,29:31:96:0.305:2	0/1:34,13:31:47:0.277:2	./.	0/1:79,22:31:102:0.218:2	0/1:65,36:30:101:0.356:2	0/1:64,35:31:99:0.354:2	0/1:80,27:31:107:0.252:2	0/1:62,35:31:97:0.361:2	0/1:57,21:31:78:0.269:2	0/1:38,26:30:64:0.406:2	0/1:71,31:30:102:0.304:2
chr2	131415008	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:64,20:26:84:0.238:2	0/1:44,14:27:58:0.241:2	./.	0/1:79,13:26:92:0.141:2	0/1:58,22:26:80:0.275:2	0/1:53,22:26:75:0.293:2	0/1:80,11:26:91:0.121:2	0/1:71,19:25:90:0.211:2	0/1:53,16:27:69:0.232:2	0/1:38,16:26:54:0.296:2	0/1:62,20:26:83:0.244:2
chr2	131415011	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,13:31:73:0.178:2	./.	./.	./.	./.	./.
chr2	131415073	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:29:82:0.049:2	./.	./.	./.	0/1:86,6:27:92:0.065:2
chr2	131415102	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:105,5:31:110:0.045:2	./.	./.	./.	./.	./.	0/1:119,7:29:126:0.056:2	./.	./.	./.	./.
chr2	131415140	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:147,19:29:166:0.114:2	0/1:102,5:30:107:0.047:2	./.	0/1:147,20:30:167:0.120:2	0/1:156,14:31:170:0.082:2	0/1:157,24:31:181:0.133:2	0/1:174,19:28:193:0.098:2	0/1:177,13:30:191:0.068:2	0/1:172,20:32:192:0.104:2	./.	./.
chr2	131415225	rs201205777	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:163,24:31:187:0.128:2	0/1:176,15:30:191:0.079:2	./.	0/1:152,41:31:193:0.212:2	0/1:165,30:29:196:0.154:2	0/1:152,39:31:191:0.204:2	0/1:170,20:31:190:0.105:2	0/1:169,23:32:192:0.120:2	0/1:171,24:32:195:0.123:2	0/1:170,24:30:194:0.124:2	./.
chr2	131415247	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,10:33:194:0.052:2	./.
chr2	131415337	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:139,45:31:184:0.245:2	0/1:147,35:32:182:0.192:2	0/1:54,16:30:70:0.229:2	0/1:146,44:31:190:0.232:2	0/1:142,52:31:194:0.268:2	0/1:146,46:31:192:0.240:2	0/1:158,37:31:195:0.190:2	0/1:141,54:31:195:0.277:2	0/1:160,35:32:195:0.179:2	0/1:128,65:32:193:0.337:2	0/1:125,64:32:189:0.339:2
chr2	131415363	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,15:31:188:0.080:2	./.	./.
chr2	131487673	rs272128	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,66:32:67:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,83:31:83:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,91:33:91:1.00:2	0/1:51,45:32:96:0.469:2	0/1:0,59:32:59:1.00:2	0/1:0,60:32:60:1.00:2
chr2	131520178	rs77687733	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,6:32:13:0.462:2	./.	./.	0/1:7,9:30:16:0.563:2	./.	0/1:7,4:31:11:0.364:2	./.
chr2	131520474	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:29:36:0.111:2	./.	./.	./.	./.
chr2	131520574	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:32:134:0.030:2	./.	./.	./.	./.	./.
chr2	131520663	rs1905235	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,43:31:44:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,23:32:23:1.00:2
chr2	131524230	rs272100	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	0/1:0,3:27:3:1.00:2	./.	./.	./.	./.	./.	0/1:0,3:29:3:1.00:2
chr2	131524482	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:33:152:0.026:2	./.	./.	./.	./.	./.
chr2	131524745	rs72854999	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,27:32:50:0.551:2	0/1:24,19:32:43:0.442:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	131672950	rs12464119	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,8:33:15:0.533:2	0/1:3,14:32:17:0.824:2	./.	0/1:0,17:31:17:1.00:2	0/1:9,7:32:16:0.438:2	0/1:0,23:32:23:1.00:2	0/1:0,17:31:17:1.00:2	0/1:9,4:27:13:0.308:2	./.	0/1:0,8:31:8:1.00:2	0/1:0,21:31:21:1.00:2
chr2	131673124	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:29:112:0.036:2	./.	./.	./.	./.
chr2	131673259	rs77678686	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:32,29:31:61:0.475:2	0/1:18,22:32:40:0.550:2	./.	./.	./.	./.	0/1:43,37:33:80:0.463:2	./.	./.	./.	./.
chr2	131673316	rs3739129	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,15:32:29:0.517:2	0/1:8,10:31:18:0.556:2	./.	0/1:0,39:31:39:1.00:2	0/1:7,8:32:15:0.533:2	0/1:1,43:31:44:0.977:2	0/1:1,44:32:45:0.978:2	0/1:13,18:32:31:0.581:2	./.	0/1:11,14:32:25:0.560:2	0/1:0,33:31:33:1.00:2
chr2	131673577	rs34513288	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:20,16:34:36:0.444:2	0/1:9,9:34:18:0.500:2	./.	0/1:26,26:33:52:0.500:2	./.	./.	./.	./.	0/1:0,49:34:49:1.00:2	./.	./.
chr2	131673702	rs62178867	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,9:29:33:0.273:2	./.	./.	0/1:26,14:31:40:0.350:2	./.	./.	./.
chr2	131673898	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.
chr2	131674285	rs3739127	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,8:32:16:0.500:2	0/1:3,3:31:6:0.500:2	./.	0/1:8,7:31:15:0.467:2	0/1:8,7:31:15:0.467:2	0/1:0,13:30:13:1.00:2	0/1:0,14:29:14:1.00:2	0/1:9,7:30:18:0.438:2	./.	0/1:0,12:27:12:1.00:2	0/1:0,14:31:14:1.00:2
chr2	131688587	rs6718816	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,44:31:103:0.427:2	./.	./.	0/1:58,38:32:96:0.396:2	./.	./.	./.
chr2	131688783	rs61750360	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:28:6:0.667:2	./.	0/1:58,39:31:97:0.402:2	./.	./.	0/1:64,47:31:111:0.423:2	./.	./.	./.
chr2	131704164	rs201813341	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,7:31:9:0.778:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	131884344	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:30:59:0.068:2	./.	./.	./.	./.	./.
chr2	131976006	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,8:28:187:0.043:2	./.
chr2	131976272	rs62177515	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,128:31:129:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,122:32:122:1.00:2	0/1:1,102:32:103:0.990:2	0/1:100,71:32:171:0.415:2	0/1:68,51:31:119:0.429:2	0/1:7,113:32:120:0.942:2	0/1:1,132:33:134:0.992:2	0/1:0,99:32:99:1.00:2	0/1:0,106:32:106:1.00:2
chr2	131976353	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:156,30:30:186:0.161:2	0/1:144,24:29:168:0.143:2	./.	0/1:147,45:30:192:0.234:2	0/1:165,19:29:184:0.103:2	0/1:138,54:29:194:0.281:2	0/1:174,21:29:195:0.108:2	0/1:146,46:30:193:0.240:2	0/1:142,45:30:187:0.241:2	0/1:179,7:32:187:0.038:2	./.
chr2	131996938	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:180,13:30:194:0.067:2	0/1:174,23:32:197:0.117:2	0/1:98,21:32:119:0.176:2	0/1:154,44:32:198:0.222:2	0/1:162,35:32:197:0.178:2	0/1:182,16:31:198:0.081:2	0/1:173,19:33:193:0.099:2	0/1:188,10:33:198:0.051:2	0/1:179,16:33:195:0.082:2	0/1:166,34:31:200:0.170:2	0/1:178,20:33:198:0.101:2
chr2	132003013	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:185,5:31:191:0.026:2	0/1:131,6:33:137:0.044:2	./.	0/1:186,7:31:193:0.036:2	./.	0/1:191,6:31:197:0.030:2	./.	./.	0/1:191,5:33:197:0.026:2	./.	./.
chr2	132010500	rs201546189	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,68:34:198:0.343:2	./.
chr2	132010541	.	T	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:182,8:25:190:0.042:2	0/1:185,7:27:192:0.036:2	0/1:111,10:28:121:0.083:2	./.	0/1:186,6:26:192:0.031:2	./.	0/1:177,6:27:183:0.033:2	0/1:184,12:24:197:0.061:2	./.	0/1:186,7:28:193:0.036:2	0/1:175,14:27:189:0.074:2
chr2	132010612	rs201817040	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:187,10:33:197:0.051:2	0/1:180,15:33:195:0.077:2	0/1:107,7:32:114:0.061:2	0/1:182,9:33:191:0.047:2	0/1:174,9:33:183:0.049:2	0/1:173,18:33:191:0.094:2	0/1:164,12:33:176:0.068:2	0/1:177,10:33:187:0.053:2	0/1:189,7:35:196:0.036:2	0/1:170,12:33:182:0.066:2	0/1:155,33:34:188:0.176:2
chr2	132010624	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:32:181:0.022:2	./.
chr2	132010633	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.	./.	./.	./.	0/1:169,5:30:174:0.029:2	./.
chr2	132010634	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:32:176:0.023:2	./.
chr2	132020953	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:192,6:31:198:0.030:2	./.	./.	./.	./.	./.	0/1:156,10:34:166:0.060:2	0/1:190,7:33:197:0.036:2	0/1:191,4:35:195:0.021:2	0/1:191,7:32:198:0.035:2	0/1:183,12:33:195:0.062:2
chr2	132020958	.	G	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:189,6:31:195:0.031:2	./.	./.	./.	0/1:182,10:31:196:0.052:2	./.	0/1:172,7:33:180:0.039:2	0/1:189,6:33:195:0.031:2	./.	0/1:178,17:32:195:0.087:2	0/1:184,11:29:196:0.056:2
chr2	132020977	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:31:194:0.026:2	./.
chr2	132020982	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,6:32:195:0.031:2	./.
chr2	132021023	rs201534564	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:175,23:30:198:0.116:2	./.	./.	./.	./.	0/1:155,40:31:195:0.205:2	./.
chr2	132021085	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:174,17:34:192:0.089:2	0/1:148,26:31:174:0.149:2	./.	./.	./.	./.	./.	0/1:180,17:31:197:0.086:2	./.	0/1:181,16:33:197:0.081:2	./.
chr2	132021146	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:175,8:34:183:0.044:2	./.	./.	./.	0/1:149,6:33:155:0.039:2	0/1:187,9:33:196:0.046:2	0/1:150,4:33:154:0.026:2	./.	0/1:153,4:36:157:0.025:2	0/1:189,4:33:193:0.021:2	./.
chr2	132021200	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:152,28:31:180:0.156:2	0/1:107,21:31:128:0.164:2	0/1:24,5:30:29:0.172:2	0/1:156,27:29:183:0.148:2	0/1:162,35:30:197:0.178:2	0/1:141,38:30:179:0.212:2	0/1:99,49:30:148:0.331:2	0/1:165,31:30:196:0.158:2	0/1:167,26:31:193:0.135:2	0/1:162,28:31:190:0.147:2	0/1:93,24:30:117:0.205:2
chr2	132021404	rs201570000	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:135,28:32:163:0.172:2	./.	./.	./.	./.	0/1:108,31:31:139:0.223:2	./.
chr2	132021422	rs200048058	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,42:32:125:0.336:2	./.	./.	./.	./.
chr2	132021475	rs11546936	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:128,12:31:141:0.086:2	./.	0/1:11,5:28:16:0.313:2	0/1:170,15:31:185:0.081:2	0/1:135,58:30:193:0.301:2	0/1:173,14:31:187:0.075:2	0/1:166,29:31:195:0.149:2	0/1:183,6:32:189:0.032:2	0/1:181,9:32:190:0.047:2	0/1:141,36:31:178:0.203:2	0/1:152,10:31:162:0.062:2
chr2	132021542	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.	./.	./.	0/1:177,8:32:185:0.043:2	./.
chr2	132021547	rs7425410	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:152,36:31:188:0.191:2	0/1:94,12:31:106:0.113:2	0/1:29,4:32:33:0.121:2	0/1:132,53:32:185:0.286:2	0/1:152,36:32:189:0.191:2	0/1:157,39:31:196:0.199:2	0/1:165,27:33:192:0.141:2	0/1:159,35:31:194:0.180:2	0/1:169,23:32:192:0.120:2	0/1:154,21:31:175:0.120:2	0/1:133,10:32:143:0.070:2
chr2	132021629	rs7424029	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:161,28:31:189:0.148:2	0/1:99,16:30:115:0.139:2	./.	0/1:133,52:31:185:0.281:2	0/1:176,18:29:194:0.093:2	0/1:151,39:30:190:0.205:2	0/1:167,26:31:194:0.135:2	0/1:177,18:31:195:0.092:2	0/1:173,13:32:188:0.070:2	./.	./.
chr2	132021715	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,5:32:189:0.026:2	./.
chr2	132021781	.	A	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:115,5:25:120:0.042:2	./.	./.	./.	0/1:149,7:28:156:0.045:2	./.	./.	./.	./.	./.	0/1:123,13:32:136:0.096:2
chr2	132021815	rs369764537	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,7:32:29:0.241:2	./.	0/1:130,20:31:150:0.133:2	0/1:128,5:31:133:0.038:2	0/1:138,4:33:142:0.028:2	0/1:138,4:32:142:0.028:2	./.	0/1:99,31:32:130:0.238:2	./.
chr2	132021817	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:31:143:0.028:2	./.	./.	0/1:109,8:31:117:0.068:2
chr2	132021857	rs202106518	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,28:31:131:0.215:2	./.	./.	./.	./.	0/1:85,26:31:112:0.234:2	./.
chr2	132021860	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,4:28:19:0.211:2	./.	./.	./.	./.	./.	./.	0/1:109,4:30:113:0.035:2	./.
chr2	132021888	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:127,7:28:135:0.052:2	./.	./.	./.	./.	./.	./.	0/1:87,5:26:92:0.054:2
chr2	132021908	rs201238743	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:91,26:31:118:0.222:2	0/1:65,18:30:84:0.217:2	./.	0/1:133,38:30:171:0.222:2	./.	./.	0/1:112,21:30:133:0.158:2	0/1:113,38:29:151:0.252:2	./.	./.	./.
chr2	132021946	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:136,40:32:176:0.227:2	0/1:102,19:31:121:0.157:2	./.	0/1:118,77:31:195:0.395:2	0/1:166,28:30:194:0.144:2	0/1:135,56:30:191:0.293:2	0/1:166,24:32:190:0.126:2	0/1:150,40:31:190:0.211:2	0/1:157,30:32:189:0.160:2	./.	./.
chr2	132022031	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:161,22:32:185:0.120:2	0/1:174,20:31:194:0.103:2	./.	0/1:150,43:30:193:0.223:2	0/1:151,43:31:194:0.222:2	0/1:146,45:30:191:0.236:2	0/1:175,19:31:194:0.098:2	0/1:171,23:32:194:0.119:2	0/1:174,21:31:195:0.108:2	0/1:170,24:31:195:0.124:2	./.
chr2	132022053	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,22:31:197:0.112:2	./.
chr2	132022143	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:146,47:31:193:0.244:2	0/1:130,50:31:180:0.278:2	0/1:53,31:32:84:0.369:2	0/1:136,55:30:191:0.288:2	0/1:157,41:31:198:0.207:2	0/1:142,52:30:194:0.268:2	0/1:145,51:31:196:0.260:2	0/1:142,53:30:197:0.272:2	0/1:167,26:32:193:0.135:2	0/1:147,46:32:193:0.238:2	0/1:141,44:31:187:0.238:2
chr2	132022169	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,10:27:191:0.053:2	./.	./.
chr2	132110663	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,69:32:197:0.350:2	./.	./.
chr2	132110828	rs373666409	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,28:32:43:0.651:2	0/1:15,12:32:27:0.444:2	./.	0/1:26,13:31:39:0.333:2	0/1:15,17:30:32:0.531:2	0/1:48,5:29:54:0.094:2	0/1:19,18:32:37:0.486:2	0/1:16,32:31:48:0.667:2	0/1:24,18:32:42:0.429:2	0/1:21,30:31:51:0.588:2	0/1:13,32:31:45:0.711:2
chr2	132120819	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:177,20:31:197:0.102:2	0/1:146,28:31:174:0.161:2	./.	0/1:160,37:30:197:0.188:2	0/1:164,34:30:198:0.172:2	0/1:145,46:31:191:0.241:2	0/1:157,33:31:190:0.174:2	0/1:153,39:31:192:0.203:2	0/1:154,33:31:187:0.176:2	0/1:171,22:29:193:0.114:2	./.
chr2	132120826	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:27:195:0.026:2	./.	./.	./.	./.
chr2	132120842	rs372991765	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:32:198:0.025:2	./.	./.	./.	./.
chr2	132120854	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:33:198:0.025:2	./.	./.	./.	./.
chr2	132120914	rs199727320	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,92:33:194:0.474:2	./.
chr2	132121081	rs202135899	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,6:30:146:0.041:2
chr2	132121350	rs371054387	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr2	132121404	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:30:5:0.600:2	./.	./.
chr2	132121559	rs6741338	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:26:64:1.00:2	0/1:0,41:28:41:1.00:2	0/1:0,20:26:20:1.00:2	0/1:0,135:26:135:1.00:2	0/1:0,138:26:138:1.00:2	0/1:0,158:25:158:1.00:2	0/1:0,128:25:128:1.00:2	0/1:0,139:26:139:1.00:2	0/1:0,121:27:121:1.00:2	0/1:0,78:27:78:1.00:2	0/1:0,71:27:71:1.00:2
chr2	132233740	rs2622026	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,96:29:144:0.671:2	./.	./.	./.	./.	./.	0/1:22,37:30:59:0.627:2
chr2	132233755	rs7561673	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,118:29:182:0.648:2	./.	./.	./.	./.	./.	0/1:30,38:30:68:0.559:2
chr2	132233785	rs7561684	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,120:31:186:0.645:2	./.	./.	./.	./.	./.	0/1:31,48:31:79:0.608:2
chr2	132236921	rs4065352	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:129,20:33:149:0.134:2	0/1:97,8:32:105:0.076:2	./.	0/1:171,21:32:192:0.109:2	0/1:131,17:30:148:0.115:2	0/1:158,37:31:195:0.190:2	0/1:159,28:31:187:0.150:2	./.	./.	0/1:134,24:32:158:0.152:2	./.
chr2	132236922	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:144,4:31:148:0.027:2	./.	./.	./.	./.	./.	./.
chr2	132236963	rs72992284	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:149,35:32:184:0.190:2	0/1:133,25:31:158:0.158:2	./.	0/1:157,35:31:192:0.182:2	0/1:152,35:31:187:0.187:2	0/1:139,50:31:190:0.265:2	0/1:153,40:32:193:0.207:2	./.	./.	./.	./.
chr2	132237643	rs72992288	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:118,18:29:136:0.132:2	0/1:78,20:31:98:0.204:2	./.	0/1:148,40:30:188:0.213:2	0/1:166,28:29:194:0.144:2	0/1:137,43:29:180:0.239:2	0/1:157,30:29:188:0.160:2	./.	./.	./.	./.
chr2	132237693	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:33:187:0.021:2	./.
chr2	132237732	rs145612794	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:176,13:30:193:0.069:2	./.	./.	0/1:183,10:30:193:0.052:2	0/1:169,7:28:176:0.040:2	0/1:180,18:29:198:0.091:2	0/1:183,13:30:196:0.066:2	./.	./.	./.	./.
chr2	132237750	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:173,21:32:194:0.108:2	0/1:128,4:33:132:0.030:2	./.	0/1:183,10:32:193:0.052:2	0/1:178,12:31:190:0.063:2	0/1:179,19:33:198:0.096:2	0/1:187,9:31:196:0.046:2	./.	./.	./.	./.
chr2	132237927	rs200147665	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:127,26:32:153:0.170:2	0/1:86,27:32:113:0.239:2	./.	0/1:128,31:32:159:0.195:2	0/1:118,25:31:143:0.175:2	0/1:143,51:32:194:0.263:2	0/1:167,25:33:192:0.130:2	./.	./.	./.	./.
chr2	132237983	rs71347110	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:85,33:30:118:0.280:2	0/1:53,30:28:83:0.361:2	./.	0/1:102,56:29:159:0.354:2	0/1:107,8:28:115:0.070:2	0/1:122,57:29:179:0.318:2	./.	./.	./.	./.	0/1:96,11:28:107:0.103:2
chr2	132238082	rs138331264	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:141,6:29:147:0.041:2	./.	./.	./.	./.	./.	0/1:76,5:28:81:0.062:2
chr2	132238097	rs141085947	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,66:29:182:0.363:2	./.	./.	./.	./.	./.	./.	./.
chr2	132238100	rs140245426	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:117,65:30:182:0.357:2	./.	./.	./.	./.	./.	./.	./.
chr2	132238169	rs2463337	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:176,4:33:180:0.022:2	0/1:136,53:32:189:0.280:2	./.	./.	./.	./.	./.	0/1:104,35:33:139:0.252:2
chr2	132238232	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:160,5:31:165:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr2	132238286	rs111626841	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,42:30:104:0.404:2	./.	./.	./.	./.	./.	0/1:49,42:32:92:0.462:2
chr2	132238298	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:31:50:0.080:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	132238306	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:66,10:15:76:0.132:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,9:17:79:0.114:2	./.
chr2	132238310	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:29:47:0.085:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	132238315	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:32:85:0.047:2	./.	./.	./.
chr2	132240243	rs199950748	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:106,13:29:120:0.109:2	0/1:64,5:32:69:0.072:2	./.	0/1:103,21:31:124:0.169:2	0/1:105,23:29:128:0.180:2	0/1:113,31:29:144:0.215:2	0/1:107,22:29:129:0.171:2	./.	./.	./.	./.
chr2	132240334	rs2272356	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:114,19:32:133:0.143:2	0/1:74,6:32:80:0.075:2	./.	0/1:148,28:31:176:0.159:2	0/1:128,23:32:151:0.152:2	0/1:123,41:31:164:0.250:2	0/1:150,30:32:180:0.167:2	./.	./.	./.	./.
chr2	132240363	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:97,11:30:108:0.102:2	./.	./.	0/1:127,16:32:143:0.112:2	0/1:106,9:31:115:0.078:2	0/1:125,17:32:142:0.120:2	0/1:135,12:32:147:0.082:2	./.	0/1:150,6:34:156:0.038:2	./.	./.
chr2	132241704	rs11553182	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,27:30:68:0.397:2	./.	./.	./.	./.	./.	0/1:29,20:32:49:0.408:2
chr2	132241731	rs75021268	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,22:29:67:0.328:2	./.	./.	./.	./.	./.	0/1:28,15:27:43:0.349:2
chr2	132243757	rs6746103	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:145,45:28:190:0.237:2	./.	./.	./.	./.	./.	0/1:153,39:28:192:0.203:2	./.
chr2	132248336	rs59539470	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,26:32:77:0.342:2	./.	./.	./.	./.	./.	0/1:48,41:27:89:0.461:2
chr2	132248379	rs12469517	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,45:32:94:0.479:2	0/1:26,25:32:51:0.490:2	./.	0/1:62,52:32:114:0.456:2	0/1:31,30:31:61:0.492:2	0/1:50,58:31:108:0.537:2	./.	0/1:93,4:34:97:0.041:2	./.	0/1:95,5:28:100:0.050:2	0/1:45,40:31:85:0.471:2
chr2	132248416	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,5:30:120:0.042:2
chr2	132249600	rs2272357	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:41,29:31:70:0.414:2	0/1:22,18:32:40:0.450:2	./.	0/1:55,37:29:92:0.402:2	./.	0/1:53,53:31:106:0.500:2	./.	./.	./.	./.	./.
chr2	132249801	rs10178851	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:30:10:0.300:2	./.	./.	./.	0/1:18,4:28:22:0.182:2	./.	./.	./.
chr2	132249818	rs1042999	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:24:13:0.385:2	./.	./.	./.	0/1:18,4:28:22:0.182:2	./.	./.	./.
chr2	132249863	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:32:8:0.375:2	./.	./.	./.	./.	./.	./.	./.
chr2	132285564	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:33:5:0.600:2	./.	./.	./.	./.	./.
chr2	132285919	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:131,30:32:161:0.186:2	0/1:107,34:31:141:0.241:2	0/1:118,47:30:165:0.285:2	0/1:107,36:31:143:0.252:2	./.	./.	0/1:112,29:32:141:0.206:2	./.
chr2	132286046	rs3101992	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:38,34:32:72:0.472:2	0/1:28,22:31:50:0.440:2	./.	0/1:75,37:32:112:0.330:2	0/1:52,25:30:77:0.325:2	0/1:72,29:32:101:0.287:2	./.	./.	./.	./.	0/1:42,26:32:68:0.382:2
chr2	132286061	rs60469601	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,28:32:59:0.475:2	0/1:25,19:31:44:0.432:2	./.	0/1:68,30:32:98:0.306:2	0/1:49,19:30:68:0.279:2	0/1:67,22:32:89:0.247:2	./.	./.	./.	./.	0/1:42,25:32:67:0.373:2
chr2	132287286	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:32:117:0.034:2	./.	./.	./.	./.
chr2	132287287	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:32:117:0.034:2	./.	./.	./.	./.
chr2	132288315	rs11547023	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,7:32:28:0.250:2	./.	0/1:132,41:31:173:0.237:2	./.	./.	./.	./.	./.	0/1:100,32:32:132:0.242:2
chr2	132288362	rs201632382	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:100,59:29:159:0.371:2	0/1:83,34:29:117:0.291:2	./.	0/1:131,63:30:194:0.325:2	0/1:163,36:30:199:0.181:2	0/1:135,55:28:190:0.289:2	0/1:193,6:26:199:0.030:2	0/1:179,17:29:196:0.087:2	0/1:175,19:27:194:0.098:2	0/1:165,29:29:194:0.149:2	0/1:115,47:29:162:0.290:2
chr2	132288398	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,5:31:195:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr2	132289293	rs149647165	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,12:33:57:0.211:2	./.	./.	./.	./.	./.	0/1:58,18:32:76:0.237:2
chr2	132289349	rs147297526	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:49,12:32:61:0.197:2	0/1:19,8:31:27:0.296:2	./.	0/1:62,12:32:74:0.162:2	./.	./.	./.	0/1:147,29:32:176:0.165:2	0/1:125,33:33:158:0.209:2	./.	./.
chr2	132290441	rs76069883	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,9:31:75:0.123:2	0/1:47,5:30:52:0.096:2	0/1:77,12:31:89:0.135:2	./.	./.	./.	./.	./.
chr2	132290464	rs13660	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:32:9:0.667:2	./.	0/1:37,15:31:52:0.288:2	./.	./.	./.	./.	./.	0/1:23,35:32:58:0.603:2
chr2	132290865	rs141731446	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:163,8:31:171:0.047:2	./.	./.	./.	./.	./.	./.	./.
chr2	132290881	rs189219021	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:30:196:0.026:2	./.	./.	./.	./.
chr2	132509178	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:106,6:30:112:0.054:2	./.	./.	./.	./.	./.	./.	./.	0/1:170,5:32:175:0.029:2	./.	./.
chr2	132524570	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:23,22:33:45:0.489:2	0/1:15,15:32:30:0.500:2	0/1:1,2:31:3:0.667:2	./.	./.	0/1:20,23:32:43:0.535:2	0/1:29,9:31:38:0.237:2	0/1:29,20:33:49:0.408:2	0/1:48,11:34:59:0.186:2	0/1:36,4:32:40:0.100:2	0/1:43,9:32:52:0.173:2
chr2	132524627	rs199947019	C	G,T	.	PASS	AC=6,1;AF=0.286,0.048;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	0/1:32:39:0.132:2	0/1:31:20:0.150:2	./.	0/2:28:51:0.078:2	./.	0/1:32:28:0.259:2	0/1:32:21:0.190:2	0/1:31:29:0.185:2	0/1:34:40:0.225:2	./.	./.
chr2	132524776	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,4:32:27:0.148:2	0/1:139,44:31:183:0.240:2	0/1:143,39:31:182:0.214:2	0/1:64,121:31:185:0.654:2	0/1:101,80:31:181:0.442:2	0/1:90,94:32:184:0.511:2	0/1:92,93:32:185:0.503:2	0/1:122,59:32:181:0.326:2	0/1:131,52:32:183:0.284:2
chr2	132552735	rs200892484	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,16:32:33:0.485:2	0/1:137,59:31:196:0.301:2	0/1:153,43:31:196:0.219:2	0/1:77,105:31:182:0.577:2	0/1:100,97:31:197:0.492:2	0/1:81,118:31:199:0.593:2	0/1:69,85:32:154:0.552:2	0/1:132,65:32:197:0.330:2	0/1:125,66:31:191:0.346:2
chr2	132552884	.	G	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,9:27:44:0.209:2	0/1:10,4:33:15:0.286:2	./.	./.	./.	0/1:15,3:32:18:0.167:2	0/1:16,4:33:22:0.200:2	0/1:33,6:31:42:0.154:2	0/1:30,9:29:39:0.231:2	./.	./.
chr2	132552941	.	A	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:22,22:34:44:0.500:2	0/1:16,10:32:26:0.385:2	0/1:4,4:33:8:0.500:2	./.	./.	0/1:16,22:32:38:0.579:2	0/1:23,14:32:37:0.378:2	0/1:39,29:31:69:0.426:2	0/1:36,11:34:47:0.234:2	0/1:22,8:32:30:0.267:2	0/1:37,8:30:45:0.178:2
chr2	132905741	rs111770980	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:124,7:32:131:0.053:2	./.	./.	0/1:124,5:31:129:0.039:2	./.	./.	0/1:141,5:30:146:0.034:2	./.	./.	./.	0/1:131,8:32:139:0.058:2
chr2	132905758	rs62165773	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,26:32:67:0.388:2	./.	./.	./.	./.	./.	./.
chr2	132905792	rs189049364	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:93,6:32:99:0.061:2	./.	./.	0/1:86,5:32:91:0.055:2	./.	./.	0/1:48,5:33:53:0.094:2	./.	0/1:82,4:33:86:0.047:2	./.	0/1:110,8:32:118:0.068:2
chr2	132911129	.	G	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:187,8:31:195:0.041:2	./.	./.	0/1:191,6:29:197:0.030:2	./.	0/1:189,8:28:197:0.041:2	0/1:189,7:29:196:0.036:2	0/1:195,5:30:200:0.025:2	./.	./.	./.
chr2	132911130	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:189,7:31:196:0.036:2	./.	./.	0/1:190,6:31:196:0.031:2	./.	0/1:189,8:30:197:0.041:2	0/1:190,7:29:197:0.036:2	0/1:193,5:28:198:0.025:2	./.	./.	./.
chr2	132911155	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:32:191:0.021:2	./.	0/1:182,4:33:186:0.022:2	./.	./.	./.
chr2	132912296	.	C	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:164,14:31:178:0.079:2	0/1:153,19:32:172:0.110:2	0/1:51,12:32:63:0.190:2	0/1:158,16:33:174:0.092:2	0/1:173,16:32:189:0.085:2	0/1:165,22:33:187:0.118:2	0/1:170,20:32:190:0.105:2	0/1:151,39:32:190:0.205:2	0/1:168,5:31:173:0.029:2	0/1:160,25:33:185:0.135:2	0/1:166,8:28:174:0.046:2
chr2	132912312	rs199906464	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:157,7:34:164:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr2	132912316	rs200558206	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:156,12:33:168:0.071:2	0/1:147,20:32:167:0.120:2	0/1:49,16:31:65:0.246:2	0/1:157,6:30:163:0.037:2	0/1:166,14:32:180:0.078:2	0/1:143,22:32:165:0.133:2	0/1:166,15:30:182:0.083:2	0/1:145,37:31:183:0.203:2	./.	0/1:142,24:31:166:0.145:2	0/1:153,4:31:157:0.025:2
chr2	132912327	rs201025942	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:149,7:27:157:0.045:2	0/1:139,15:28:154:0.097:2	0/1:46,14:29:60:0.233:2	./.	0/1:139,7:27:146:0.048:2	0/1:121,17:27:138:0.123:2	0/1:148,8:26:156:0.051:2	0/1:113,26:26:140:0.187:2	./.	0/1:128,18:26:148:0.123:2	./.
chr2	132919099	rs199974298	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:67,4:30:72:0.056:2	./.	./.	./.	0/1:42,4:30:46:0.087:2	./.	0/1:36,4:31:40:0.100:2	./.	./.	./.	./.
chr2	132919171	rs199695856	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:141,10:28:151:0.066:2	./.	./.	./.	0/1:134,9:27:143:0.063:2	0/1:152,5:30:157:0.032:2	0/1:138,14:30:152:0.092:2	0/1:170,8:28:178:0.045:2	0/1:172,10:28:182:0.055:2	./.	./.
chr2	132919192	rs111295191	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:147,8:32:155:0.052:2	./.	./.	./.	0/1:166,6:31:172:0.035:2	./.	0/1:159,11:31:170:0.065:2	0/1:190,8:28:198:0.040:2	0/1:181,9:32:190:0.047:2	./.	0/1:164,5:31:169:0.030:2
chr2	133014602	rs75245503	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,6:29:6:1.00:2	./.	./.	./.
chr2	133014612	rs74853538	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,6:29:6:1.00:2	./.	./.	./.
chr2	133174764	rs2241764	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,74:31:134:0.556:2	0/1:42,39:32:81:0.481:2	0/1:20,15:30:35:0.429:2	0/1:75,97:31:172:0.564:2	./.	0/1:68,77:31:145:0.531:2	0/1:94,68:32:162:0.420:2	./.	0/1:0,155:32:155:1.00:2	0/1:59,42:31:101:0.416:2	0/1:87,66:32:153:0.431:2
chr2	133174999	rs2241763	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,50:30:111:0.450:2	0/1:41,36:30:77:0.468:2	0/1:11,6:30:17:0.353:2	0/1:56,52:30:108:0.481:2	./.	0/1:92,74:29:167:0.446:2	0/1:107,85:29:192:0.443:2	./.	0/1:1,121:31:122:0.992:2	0/1:63,46:30:109:0.422:2	0/1:47,62:30:110:0.569:2
chr2	133403820	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:30:113:0.035:2	./.	./.	./.	./.	./.
chr2	133489401	rs17397142	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,82:32:159:0.516:2	./.	./.	./.	0/1:97,69:32:166:0.416:2	./.	0/1:60,56:32:116:0.483:2	./.
chr2	133489601	rs56284623	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,5:32:6:0.833:2	0/1:22,42:32:64:0.656:2	./.	./.	./.	./.	./.	./.	./.
chr2	133538651	rs72989577	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,85:32:190:0.447:2	./.	./.	./.
chr2	133539566	rs6730282	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:106,82:31:188:0.436:2	0/1:86,68:31:154:0.442:2	0/1:23,17:31:42:0.425:2	0/1:0,179:30:179:1.00:2	0/1:103,85:30:188:0.452:2	0/1:120,78:30:198:0.394:2	0/1:93,100:30:194:0.518:2	0/1:0,185:31:185:1.00:2	./.	0/1:92,87:31:179:0.486:2	./.
chr2	133540605	rs13016342	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,172:31:173:0.994:2	./.	./.	./.
chr2	133541107	rs16841277	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:80,94:30:174:0.540:2	0/1:57,76:31:133:0.571:2	0/1:7,8:30:15:0.533:2	0/1:3,179:29:182:0.984:2	0/1:71,61:29:132:0.462:2	./.	0/1:80,84:29:164:0.512:2	./.	./.	0/1:75,97:30:172:0.564:2	./.
chr2	133541444	rs12691829	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,54:31:85:0.635:2	0/1:21,36:30:57:0.632:2	./.	0/1:1,74:30:75:0.987:2	0/1:24,14:31:38:0.368:2	0/1:54,47:30:101:0.465:2	0/1:11,27:30:38:0.711:2	0/1:0,73:30:73:1.00:2	./.	0/1:34,42:31:77:0.553:2	./.
chr2	133541454	rs12691830	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,59:33:92:0.641:2	0/1:27,40:32:67:0.597:2	0/1:5,3:32:8:0.375:2	0/1:1,90:32:91:0.989:2	0/1:28,17:31:45:0.378:2	0/1:61,52:32:113:0.460:2	0/1:14,35:33:49:0.714:2	0/1:0,94:33:94:1.00:2	./.	0/1:44,49:33:93:0.527:2	./.
chr2	133541575	rs12611515	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,24:29:56:0.429:2	./.	0/1:1,61:31:62:0.984:2	./.	0/1:38,27:32:65:0.415:2	./.
chr2	133542014	rs12616282	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:67,56:29:123:0.455:2	0/1:39,30:30:69:0.435:2	0/1:4,9:30:13:0.692:2	0/1:0,95:30:95:1.00:2	0/1:41,32:28:73:0.438:2	0/1:43,40:29:84:0.482:2	0/1:62,37:29:99:0.374:2	0/1:0,88:29:88:1.00:2	./.	0/1:63,35:30:98:0.357:2	./.
chr2	133542545	rs10191147	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,24:31:62:0.387:2	./.	0/1:1,56:32:57:0.982:2	./.	./.	./.
chr2	133542574	rs61995744	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,23:32:57:0.404:2	0/1:12,26:31:38:0.684:2	0/1:6,6:30:12:0.500:2	0/1:4,76:31:80:0.950:2	0/1:42,22:31:64:0.344:2	./.	0/1:46,36:31:82:0.439:2	./.	./.	0/1:18,32:31:50:0.640:2	./.
chr2	133542585	rs17325719	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,84:32:85:0.988:2	./.	./.	./.
chr2	133542860	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:127,12:30:139:0.086:2	./.	./.	./.	./.	./.	./.
chr2	133554288	rs1868076	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,8:32:29:0.276:2	0/1:12,9:31:21:0.429:2	./.	0/1:0,45:33:45:1.00:2	0/1:17,7:33:25:0.292:2	0/1:20,17:32:37:0.459:2	0/1:17,15:32:32:0.469:2	0/1:0,32:33:32:1.00:2	./.	0/1:20,20:33:40:0.500:2	./.
chr2	135206340	rs2230908	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,82:30:150:0.547:2	./.	0/1:65,85:30:151:0.567:2	./.	./.
chr2	135470864	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,4:30:18:0.222:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	135711516	rs3814355	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,24:31:60:0.400:2	0/1:36,20:32:56:0.357:2	0/1:0,4:31:4:1.00:2	0/1:40,16:30:56:0.286:2	0/1:20,13:30:33:0.394:2	0/1:0,53:29:53:1.00:2	0/1:33,18:30:51:0.353:2	0/1:29,23:30:52:0.442:2	0/1:0,54:31:54:1.00:2	0/1:28,30:30:58:0.517:2	0/1:42,30:31:72:0.417:2
chr2	135711657	rs3814354	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,25:31:52:0.481:2	0/1:31,15:32:46:0.326:2	0/1:0,11:31:11:1.00:2	0/1:32,32:31:64:0.500:2	0/1:36,31:31:67:0.463:2	0/1:1,65:30:66:0.985:2	0/1:67,42:31:109:0.385:2	0/1:36,50:31:86:0.581:2	0/1:0,72:32:72:1.00:2	0/1:27,33:31:60:0.550:2	0/1:49,26:31:75:0.347:2
chr2	135738715	rs56284052	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	135740876	rs60969462	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:41,40:30:81:0.494:2	0/1:27,27:31:54:0.500:2	./.	./.	0/1:42,28:32:70:0.400:2	0/1:53,44:32:97:0.454:2	./.	./.	0/1:68,56:32:124:0.452:2	0/1:48,41:31:89:0.461:2	./.
chr2	135745129	rs16831235	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,49:32:94:0.521:2	0/1:50,42:31:92:0.457:2	./.	./.	./.	0/1:116,62:32:179:0.348:2
chr2	135745304	rs140022497	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,7:31:14:0.500:2	./.	./.	./.	./.	./.	./.
chr2	135745392	rs11888766	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,21:32:43:0.488:2	0/1:13,7:32:20:0.350:2	./.	./.	0/1:11,12:31:23:0.522:2	0/1:18,14:31:32:0.438:2	./.	./.	0/1:18,10:32:28:0.357:2	0/1:13,19:31:32:0.594:2	./.
chr2	135745545	rs11899779	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:81,61:32:143:0.430:2	0/1:51,44:32:95:0.463:2	./.	./.	0/1:40,69:31:109:0.633:2	0/1:61,82:31:143:0.573:2	./.	0/1:147,7:30:154:0.045:2	0/1:97,73:33:170:0.429:2	0/1:72,60:32:132:0.455:2	./.
chr2	135745722	rs10928526	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,15:33:37:0.405:2	0/1:14,15:32:29:0.517:2	./.	./.	0/1:6,16:31:22:0.727:2	0/1:16,22:32:38:0.579:2	./.	./.	0/1:23,20:33:43:0.465:2	0/1:13,14:32:27:0.519:2	./.
chr2	135781035	rs16831256	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,53:33:129:0.411:2
chr2	135887570	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,5:36:123:0.041:2	./.	./.	./.
chr2	135893372	rs10445686	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,8:32:16:0.500:2	0/1:63,43:32:106:0.406:2	0/1:44,19:32:63:0.302:2	./.	0/1:41,29:33:70:0.414:2	./.	0/1:49,42:34:91:0.462:2	./.	./.
chr2	135911422	rs17261772	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,21:28:54:0.389:2	0/1:31,20:28:51:0.392:2	0/1:0,5:28:5:1.00:2	0/1:45,30:29:75:0.400:2	0/1:28,23:28:51:0.451:2	0/1:26,33:29:59:0.559:2	0/1:30,33:29:63:0.524:2	./.	0/1:0,81:29:81:1.00:2	./.	0/1:49,33:28:82:0.402:2
chr2	135960423	rs187035401	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,23:32:60:0.383:2	./.
chr2	135965376	rs7578111	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,23:27:51:0.451:2
chr2	135988127	rs59900519	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:31:14:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:65,70:33:135:0.519:2
chr2	135988186	rs58917764	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,104:32:189:0.556:2
chr2	135988416	rs935615	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,81:33:181:0.448:2
chr2	136107663	rs183525970	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,30:32:71:0.423:2	./.	./.	./.	./.	./.
chr2	136107777	rs61744510	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,16:31:29:0.552:2
chr2	136148401	rs2043757	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,16:23:37:0.432:2
chr2	136148402	rs2043758	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,16:28:35:0.457:2
chr2	136393658	rs961360	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,30:32:60:0.500:2	0/1:26,11:31:37:0.297:2	0/1:34,22:31:56:0.393:2	0/1:20,12:31:32:0.375:2	./.	0/1:23,30:32:53:0.566:2	./.	./.
chr2	136396300	rs2278731	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:27:13:0.385:2	0/1:12,7:29:19:0.368:2	0/1:10,8:30:18:0.444:2	0/1:6,7:29:13:0.538:2	./.	0/1:6,10:29:16:0.625:2	./.	./.
chr2	136396476	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,7:32:25:0.280:2	./.	./.	./.	./.	./.	./.	./.
chr2	136403048	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,57:31:107:0.533:2	./.	./.	./.	./.	./.
chr2	136407479	rs1446585	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,38:28:88:0.432:2	0/1:34,27:28:61:0.443:2	0/1:0,4:26:4:1.00:2	0/1:54,52:29:106:0.491:2	0/1:56,52:29:108:0.481:2	0/1:57,62:28:119:0.521:2	0/1:64,56:28:120:0.467:2	0/1:80,75:28:155:0.484:2	0/1:1,124:29:125:0.992:2	./.	0/1:53,59:28:112:0.527:2
chr2	136409574	rs2305165	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:31:14:0.429:2	./.	./.	./.	./.	./.	0/1:84,51:30:135:0.378:2	./.	0/1:63,64:29:127:0.504:2
chr2	136511817	rs1050115	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,50:33:130:0.385:2	0/1:27,39:33:66:0.591:2	./.	0/1:53,49:33:102:0.480:2	./.	0/1:78,60:33:138:0.435:2	./.	0/1:67,69:33:136:0.507:2
chr2	136519456	rs201063365	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,93:32:189:0.492:2	./.	./.	./.	./.	./.
chr2	136537911	rs62170084	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,39:30:97:0.402:2	./.	./.	./.	./.	./.
chr2	136546061	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,5:26:147:0.034:2	./.	./.	./.
chr2	136546110	rs2278544	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:30:65:1.00:2	0/1:1,28:30:29:0.966:2	0/1:5,8:31:13:0.615:2	0/1:47,46:30:94:0.495:2	0/1:65,43:30:108:0.398:2	0/1:48,39:30:87:0.448:2	0/1:72,48:30:120:0.400:2	0/1:1,107:30:108:0.991:2	./.	0/1:1,58:28:59:0.983:2	./.
chr2	136555659	rs2322659	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,25:32:25:1.00:2	./.	0/1:32,35:32:67:0.522:2	0/1:33,37:32:70:0.529:2	0/1:49,41:33:90:0.456:2	0/1:53,41:33:94:0.436:2	0/1:52,54:32:106:0.509:2	./.	0/1:0,67:32:67:1.00:2	./.
chr2	136561557	rs2304371	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:32:102:1.00:2	0/1:0,58:32:58:1.00:2	0/1:6,7:28:13:0.538:2	0/1:63,51:31:114:0.447:2	0/1:77,83:31:160:0.519:2	0/1:0,116:31:116:1.00:2	0/1:89,72:32:161:0.447:2	0/1:0,126:31:126:1.00:2	0/1:68,52:33:120:0.433:2	0/1:0,100:32:100:1.00:2	0/1:63,64:32:127:0.504:2
chr2	136562472	rs3739022	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,11:30:18:0.611:2	./.	./.	0/1:76,47:30:123:0.382:2	./.	0/1:77,76:31:154:0.497:2	0/1:70,60:32:130:0.462:2	./.	0/1:65,61:30:126:0.484:2
chr2	136567524	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,62:32:127:0.488:2	./.	./.	./.
chr2	136575199	rs6719488	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,65:32:66:0.985:2	0/1:0,25:32:25:1.00:2	./.	0/1:59,41:33:100:0.410:2	0/1:46,60:31:106:0.566:2	0/1:44,33:31:77:0.429:2	0/1:40,46:32:86:0.535:2	0/1:41,39:31:81:0.488:2	./.	0/1:0,66:32:66:1.00:2	./.
chr2	136575534	rs4954449	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:30:19:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,25:31:25:1.00:2
chr2	136590746	rs3754689	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:31:3:1.00:2	0/1:17,16:29:33:0.485:2	0/1:25,17:30:42:0.405:2	./.	0/1:21,12:30:33:0.364:2	./.	0/1:26,14:32:40:0.350:2	./.	0/1:40,25:31:65:0.385:2
chr2	136594158	rs2236783	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,103:32:104:0.990:2	0/1:1,74:32:75:0.987:2	./.	0/1:107,85:32:192:0.443:2	0/1:90,65:32:155:0.419:2	0/1:119,70:31:189:0.370:2	0/1:89,74:32:163:0.454:2	0/1:105,84:32:189:0.444:2	./.	0/1:5,168:32:173:0.971:2	./.
chr2	136605754	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,20:27:36:0.556:2	./.	./.	./.	./.	./.
chr2	136623841	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,6:32:74:0.081:2	./.	./.	./.	./.
chr2	136690424	rs567363	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,3:34:26:0.115:2	0/1:11,4:32:15:0.267:2	./.	0/1:12,4:24:16:0.250:2	./.	0/1:18,6:35:24:0.250:2	./.	0/1:20,5:34:25:0.200:2
chr2	136690425	rs371309040	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,12:32:24:0.500:2	0/1:9,6:31:15:0.400:2	./.	0/1:6,10:31:16:0.625:2	./.	0/1:15,9:32:24:0.375:2	./.	0/1:14,10:33:24:0.417:2
chr2	136719004	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,4:28:28:0.143:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	136873084	rs2228014	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:31:10:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	136873549	rs2680880	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,12:30:28:0.429:2	0/1:4,7:30:11:0.636:2	./.	./.	0/1:0,26:30:26:1.00:2	0/1:14,11:31:25:0.440:2	0/1:10,5:32:15:0.333:2	./.	./.	0/1:0,17:31:17:1.00:2	./.
chr2	137814138	rs60939389	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,22:32:22:1.00:2	./.	./.	0/1:107,44:32:151:0.291:2	./.	./.	0/1:88,97:33:185:0.524:2	./.	./.
chr2	137814477	rs17727482	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,141:29:144:1.00:2	0/1:0,82:30:82:1.00:2	./.	./.	0/1:84,46:29:130:0.354:2	./.	./.	./.	./.	0/1:0,137:30:137:1.00:2	0/1:0,154:29:154:1.00:2
chr2	137917922	rs4954474	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:2,142:31:145:0.986:2	0/1:0,70:31:70:1.00:2	./.	./.	./.	./.	0/1:95,81:31:176:0.460:2	0/1:2,170:31:172:0.988:2	./.	0/1:0,143:31:143:1.00:2	0/1:77,75:30:152:0.493:2
chr2	137990678	rs16838413	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,28:31:79:0.354:2	./.	./.
chr2	138375972	rs17692792	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,31:32:84:0.369:2	./.	0/1:48,30:32:78:0.385:2	./.	./.	./.	0/1:40,40:32:80:0.500:2	./.
chr2	138420996	rs10206850	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,40:33:86:0.465:2	0/1:37,19:33:56:0.339:2	0/1:7,12:33:19:0.632:2	0/1:48,52:33:100:0.520:2	0/1:36,32:33:68:0.471:2	0/1:33,51:32:84:0.607:2	0/1:40,40:33:80:0.500:2	0/1:0,112:33:112:1.00:2	0/1:47,52:34:99:0.525:2	0/1:39,36:34:75:0.480:2	0/1:58,63:34:121:0.521:2
chr2	138434130	rs61750799	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,22:34:53:0.415:2	./.	./.	0/1:27,20:33:47:0.426:2	./.	0/1:32,25:34:57:0.439:2	./.	./.
chr2	138759649	rs11558538	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,92:30:193:0.479:2	./.	./.	0/1:96,90:31:186:0.484:2	./.	0/1:107,87:31:194:0.448:2
chr2	139308127	rs35257103	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,56:31:131:0.427:2	./.	./.
chr2	139326614	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2
chr2	139429068	rs10803570	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,28:32:66:0.424:2	0/1:31,21:31:52:0.404:2	0/1:0,8:30:8:1.00:2	0/1:43,26:31:69:0.377:2	0/1:0,62:31:62:1.00:2	0/1:1,65:31:66:0.985:2	0/1:29,30:32:59:0.508:2	0/1:52,55:31:107:0.514:2	0/1:51,34:33:85:0.400:2	0/1:2,56:31:58:0.966:2	./.
chr2	141032088	rs1386356	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:46,39:31:85:0.459:2	0/1:26,25:32:51:0.490:2	0/1:2,12:31:14:0.857:2	./.	0/1:2,114:31:116:0.983:2	0/1:0,88:31:88:1.00:2	0/1:92,58:31:150:0.387:2	0/1:0,131:32:131:1.00:2	0/1:77,45:32:122:0.369:2	./.	0/1:56,48:32:104:0.462:2
chr2	141214097	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,7:33:48:0.146:2	./.	./.	./.	./.
chr2	141242918	rs34488772	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,39:31:39:1.00:2	./.	./.	./.
chr2	141245204	rs74789055	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,49:32:53:0.925:2	./.	./.	./.
chr2	141259283	rs35296183	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,23:30:43:0.535:2	0/1:0,28:31:28:1.00:2	./.	./.	./.	./.	./.	./.
chr2	141259376	rs35164907	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,23:29:42:0.548:2	0/1:1,34:31:35:0.971:2	./.	./.	0/1:0,43:30:43:1.00:2	./.	./.	./.
chr2	141260668	rs4444457	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,32:33:81:0.395:2	0/1:28,22:32:50:0.440:2	0/1:0,6:32:6:1.00:2	0/1:43,45:32:88:0.511:2	0/1:2,82:31:84:0.976:2	0/1:54,40:31:94:0.426:2	0/1:51,41:33:92:0.446:2	0/1:2,82:31:84:0.976:2	./.	./.	./.
chr2	141274576	rs4954672	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,69:32:72:0.958:2	0/1:2,46:33:48:0.958:2	0/1:0,11:32:11:1.00:2	0/1:0,58:33:58:1.00:2	0/1:1,38:32:39:0.974:2	./.	0/1:0,47:33:47:1.00:2	0/1:48,52:33:100:0.520:2	0/1:1,86:34:87:0.989:2	0/1:0,60:32:61:1.00:2	0/1:0,97:33:97:1.00:2
chr2	141457985	rs13431727	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,14:30:36:0.389:2	./.	./.	./.	./.	./.	./.
chr2	141458166	rs376156015	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,22:32:63:0.349:2	0/1:27,15:32:42:0.357:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	141571329	rs3749010	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,53:28:126:0.421:2	0/1:43,48:28:91:0.527:2	0/1:13,8:28:21:0.381:2	0/1:63,52:28:115:0.452:2	0/1:0,81:28:81:1.00:2	0/1:0,92:28:92:1.00:2	0/1:0,102:28:102:1.00:2	0/1:3,90:28:93:0.968:2	0/1:0,115:29:115:1.00:2	0/1:0,90:29:90:1.00:2	0/1:70,47:28:117:0.402:2
chr2	141625828	rs200955532	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,7:14:33:0.212:2	./.	0/1:28,5:20:33:0.152:2	./.	0/1:31,8:19:39:0.205:2	./.	0/1:14,8:23:22:0.364:2	0/1:23,7:20:30:0.233:2
chr2	141707868	rs6748626	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:26,31:30:57:0.544:2	0/1:22,25:31:47:0.532:2	0/1:3,9:32:12:0.750:2	./.	./.	./.	0/1:64,62:31:126:0.492:2	./.	./.	./.	./.
chr2	141709419	rs1429348	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:89,70:33:159:0.440:2	0/1:51,21:33:72:0.292:2	0/1:11,14:30:25:0.560:2	0/1:108,89:33:197:0.452:2	0/1:1,160:33:161:0.994:2	0/1:0,190:33:190:1.00:2	0/1:107,93:33:200:0.465:2	./.	0/1:111,86:33:197:0.437:2	0/1:2,134:33:136:0.985:2	0/1:3,168:33:171:0.982:2
chr2	141751592	rs13007735	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,78:32:79:0.987:2	0/1:1,43:32:44:0.977:2	./.	0/1:2,133:31:135:0.985:2	./.	0/1:48,47:31:95:0.495:2	./.	0/1:0,163:32:163:1.00:2	0/1:43,38:32:81:0.469:2	0/1:0,73:32:73:1.00:2	0/1:50,55:32:105:0.524:2
chr2	141773397	rs78806080	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:49,41:32:90:0.456:2	0/1:19,31:31:50:0.620:2	./.	./.	./.	./.	./.	./.	./.	0/1:45,42:32:87:0.483:2	./.
chr2	141773450	rs75995642	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,51:33:101:0.505:2	./.	./.	./.	./.
chr2	141806710	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:33:153:0.026:2	./.	./.	./.	./.
chr2	141816621	rs1525579	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:32:23:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,27:33:27:1.00:2
chr2	142238074	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:155,4:32:159:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr2	142567910	rs12990449	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,8:29:13:0.615:2	0/1:91,60:30:151:0.397:2	./.	0/1:83,80:30:163:0.491:2	./.	0/1:84,76:28:160:0.475:2	0/1:1,150:30:151:0.993:2	0/1:80,61:29:141:0.433:2	0/1:6,136:29:142:0.958:2
chr2	143798189	rs9013	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,40:30:91:0.440:2	./.	0/1:40,41:30:81:0.506:2	0/1:24,24:31:48:0.500:2	0/1:32,39:30:71:0.549:2	0/1:48,41:30:89:0.461:2	./.	./.
chr2	143913175	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:147,4:32:151:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr2	144194565	rs17230746	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,32:31:84:0.381:2	./.	0/1:34,27:31:61:0.443:2	./.	0/1:31,26:32:57:0.456:2	./.	./.	./.
chr2	144699903	rs28521602	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,44:31:76:0.579:2	./.	./.	0/1:46,43:31:89:0.483:2	./.	./.	./.
chr2	144699925	rs79904664	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,43:30:110:0.391:2	./.	./.	./.	./.	./.
chr2	144700007	rs62167033	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,22:32:52:0.423:2	./.	./.	0/1:36,51:31:87:0.586:2	./.	./.	./.
chr2	144700126	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,4:32:58:0.069:2	./.	./.	./.	./.	./.	./.
chr2	144700186	rs12612842	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,30:31:84:0.357:2	./.
chr2	144899559	rs3731958	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,36:32:76:0.474:2	0/1:28,16:33:44:0.364:2	0/1:6,5:31:11:0.455:2	0/1:0,71:31:71:1.00:2	0/1:42,25:29:67:0.373:2	0/1:0,72:31:72:1.00:2	./.	./.	0/1:66,50:33:116:0.431:2	0/1:43,27:32:70:0.386:2	0/1:0,108:32:108:1.00:2
chr2	145147416	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:32:35:0.114:2	./.
chr2	145154026	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2
chr2	145161665	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,32:32:122:0.262:2	./.	./.	./.	./.	./.	./.	./.
chr2	145187383	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,8:19:123:0.066:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,11:16:148:0.075:2
chr2	145188171	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:33:109:0.037:2	./.	./.
chr2	148657117	rs1128919	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,6:31:12:0.500:2	0/1:22,11:30:33:0.333:2	0/1:8,14:33:22:0.636:2	0/1:24,22:32:46:0.478:2	0/1:2,22:33:24:0.917:2	./.	./.	0/1:16,21:33:37:0.568:2	0/1:24,23:33:47:0.489:2
chr2	148676144	rs371059184	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,16:14:50:0.327:2	./.	./.	0/1:33,25:13:58:0.431:2	0/1:30,20:13:50:0.400:2	0/1:28,13:14:42:0.317:2	0/1:34,22:13:56:0.393:2	0/1:28,21:14:49:0.429:2	./.	./.	0/1:32,13:14:45:0.289:2
chr2	148716428	rs2307394	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,6:32:9:0.667:2	0/1:55,40:33:95:0.421:2	0/1:52,57:32:109:0.523:2	0/1:42,42:32:84:0.500:2	0/1:2,110:33:112:0.982:2	./.	./.	0/1:63,49:33:112:0.438:2	0/1:60,51:32:111:0.459:2
chr2	148730367	rs2307397	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,73:33:137:0.533:2	./.	./.
chr2	148731020	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,76:32:190:0.400:2	./.	./.	./.	./.
chr2	149227262	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:33:92:0.043:2	./.
chr2	149227439	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:33:50:0.080:2	./.	./.
chr2	149227647	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:32:126:0.032:2	./.	./.	./.
chr2	149241329	rs188449443	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,33:31:62:0.532:2	./.	./.	./.	./.	./.	./.
chr2	149449185	rs6724787	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,28:30:69:0.412:2	0/1:17,28:30:45:0.622:2	0/1:0,4:31:4:1.00:2	0/1:45,41:30:86:0.477:2	0/1:2,47:29:49:0.959:2	./.	0/1:0,42:29:42:1.00:2	0/1:0,51:29:51:1.00:2	0/1:1,70:31:71:0.986:2	0/1:42,29:30:71:0.408:2	./.
chr2	149528844	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:34:184:0.022:2	./.	./.	./.
chr2	149639422	rs7426241	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:32:9:0.444:2	0/1:34,8:31:42:0.190:2	0/1:31,4:33:35:0.114:2	0/1:51,12:31:63:0.190:2	0/1:32,8:30:40:0.200:2	0/1:59,6:32:65:0.092:2	0/1:62,6:31:68:0.088:2	0/1:36,22:31:58:0.379:2	./.
chr2	149799216	rs61734995	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:31:13:0.538:2	./.	./.	./.	./.	0/1:84,77:29:161:0.478:2	./.	./.	./.
chr2	149806388	rs60169973	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,55:32:133:0.414:2	./.	./.	./.
chr2	150426637	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:31:147:0.027:2	./.	./.	./.	./.	./.
chr2	150432976	rs11545261	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,63:32:145:0.434:2	0/1:76,48:32:124:0.387:2	0/1:0,27:32:27:1.00:2	0/1:0,189:31:189:1.00:2	0/1:0,120:31:120:1.00:2	0/1:92,106:31:198:0.535:2	0/1:0,138:31:138:1.00:2	0/1:3,192:31:195:0.985:2	0/1:0,185:32:185:1.00:2	0/1:0,155:32:155:1.00:2	0/1:1,185:31:186:0.995:2
chr2	150438708	rs61750442	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,41:29:87:0.471:2	0/1:27,17:30:44:0.386:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	150438770	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:33:85:0.047:2	./.	./.
chr2	151326514	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:30:131:0.031:2	./.	./.	./.	./.
chr2	152117957	rs2271813	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,8:28:27:0.296:2	./.	0/1:109,73:26:183:0.401:2	./.	./.	./.	./.	0/1:0,106:27:107:1.00:2	./.
chr2	152118271	rs55775354	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:32,29:30:61:0.475:2	0/1:21,16:31:37:0.432:2	0/1:2,5:31:7:0.714:2	./.	./.	0/1:46,56:30:103:0.549:2	0/1:4,58:30:62:0.935:2	0/1:1,115:31:116:0.991:2	0/1:47,40:32:87:0.460:2	./.	0/1:21,33:29:54:0.611:2
chr2	152118275	rs56376752	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:31,28:32:59:0.475:2	0/1:21,15:32:36:0.417:2	0/1:2,5:33:7:0.714:2	./.	./.	0/1:44,55:32:99:0.556:2	0/1:5,54:32:59:0.915:2	0/1:1,112:32:113:0.991:2	0/1:48,39:33:87:0.448:2	./.	0/1:21,31:31:52:0.596:2
chr2	152132130	rs289834	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,17:31:65:0.262:2	0/1:35,28:30:63:0.444:2	./.	./.	./.	0/1:46,52:33:98:0.531:2	./.	0/1:69,64:33:133:0.481:2
chr2	152135415	rs11551174	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,30:32:63:0.476:2	./.	./.	./.	./.	./.	./.	./.
chr2	152138522	rs3771886	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,21:33:56:0.382:2	0/1:25,7:32:32:0.219:2	0/1:3,7:33:10:0.700:2	0/1:35,43:33:78:0.551:2	0/1:24,19:33:43:0.442:2	0/1:41,28:33:69:0.406:2	0/1:0,30:34:30:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,69:34:69:1.00:2	./.	0/1:1,77:32:78:0.987:2
chr2	152139416	rs1048135	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,58:33:108:0.537:2	0/1:22,29:32:51:0.569:2	./.	./.	./.	0/1:79,61:31:140:0.436:2	0/1:0,53:32:53:1.00:2	0/1:0,98:32:98:1.00:2	0/1:76,63:32:139:0.453:2	./.	0/1:101,80:32:181:0.442:2
chr2	152220510	rs75961064	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,82:30:176:0.466:2	./.	./.	./.	./.	./.
chr2	152226570	rs1046668	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:14,14:28:28:0.500:2	0/1:11,3:30:14:0.214:2	./.	0/1:8,15:30:23:0.652:2	./.	0/1:13,18:29:31:0.581:2	./.	0/1:15,12:30:27:0.444:2	./.	./.	./.
chr2	152226616	rs78264792	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,20:33:47:0.426:2	./.	./.	./.	./.	./.
chr2	152235888	rs75295519	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:127,58:31:185:0.314:2	./.	./.	./.	./.	./.	./.	./.
chr2	152311570	rs2444263	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:56,68:33:124:0.548:2	0/1:37,43:33:80:0.538:2	0/1:7,9:33:16:0.563:2	./.	0/1:72,62:32:134:0.463:2	0/1:91,86:32:177:0.486:2	0/1:0,176:33:176:1.00:2	0/1:0,175:33:175:1.00:2	0/1:111,80:33:191:0.419:2	0/1:97,49:32:146:0.336:2	0/1:96,84:33:180:0.467:2
chr2	152311612	rs61750444	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,36:32:84:0.429:2	./.	./.	./.	./.	./.	./.
chr2	152314385	rs16830047	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:28,29:32:57:0.509:2	0/1:20,23:32:43:0.535:2	./.	./.	0/1:23,13:31:36:0.361:2	./.	0/1:0,59:31:59:1.00:2	./.	./.	0/1:38,18:31:56:0.321:2	./.
chr2	152319957	rs189603165	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,7:29:22:0.318:2	./.	./.	./.	./.	./.	./.	./.
chr2	152320118	rs2123465	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,11:32:26:0.423:2	0/1:17,8:32:25:0.320:2	./.	./.	0/1:9,8:31:17:0.471:2	0/1:30,17:30:47:0.362:2	0/1:0,15:31:15:1.00:2	0/1:0,21:32:21:1.00:2	0/1:9,13:32:22:0.591:2	./.	0/1:23,14:32:37:0.378:2
chr2	152320128	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:32:48:0.083:2	./.	./.	./.	./.	./.
chr2	152321091	rs61748233	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,17:30:35:0.486:2	./.	./.	./.	./.	./.	./.
chr2	152322095	rs2444257	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,55:31:55:1.00:2	0/1:0,34:31:34:1.00:2	0/1:2,5:30:7:0.714:2	./.	0/1:32,18:29:50:0.360:2	0/1:33,28:29:62:0.459:2	0/1:2,35:30:37:0.946:2	0/1:0,50:30:50:1.00:2	0/1:47,26:30:73:0.356:2	0/1:26,18:30:44:0.409:2	0/1:32,42:31:74:0.568:2
chr2	152322115	rs189342229	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,53:30:86:0.616:2	./.	./.	./.	./.	./.	./.	./.
chr2	152331418	rs1065177	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,61:32:61:1.00:2	0/1:0,35:32:35:1.00:2	0/1:4,5:33:9:0.556:2	./.	0/1:21,25:32:46:0.543:2	0/1:26,43:32:69:0.623:2	0/1:0,51:31:51:1.00:2	0/1:0,74:32:74:1.00:2	0/1:40,35:33:76:0.467:2	0/1:35,37:32:72:0.514:2	0/1:35,46:32:81:0.568:2
chr2	152346494	rs13031275	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,51:30:126:0.405:2	0/1:31,28:31:59:0.475:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	152346979	rs1061305	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,35:29:72:0.486:2	0/1:19,9:29:28:0.321:2	./.	./.	./.	0/1:38,31:28:69:0.449:2	./.	0/1:4,106:29:110:0.964:2	0/1:42,28:31:70:0.400:2	./.	0/1:50,36:28:86:0.419:2
chr2	152352843	rs7575451	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:53,54:33:107:0.505:2	0/1:34,44:32:78:0.564:2	./.	./.	0/1:36,37:32:73:0.507:2	0/1:61,60:32:121:0.496:2	0/1:0,88:33:88:1.00:2	0/1:0,143:32:143:1.00:2	0/1:74,63:33:137:0.460:2	0/1:60,54:32:114:0.474:2	0/1:75,70:33:145:0.483:2
chr2	152354173	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,3:31:35:0.086:2	./.	./.	./.	./.	./.	./.
chr2	152354200	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:31:76:0.053:2	./.	./.	./.
chr2	152362003	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:169,4:32:173:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr2	152364589	rs41270201	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	152373006	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:32:167:0.024:2	./.
chr2	152382740	rs76664802	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,16:14:156:0.103:2	./.	./.	./.	./.
chr2	152382759	rs61730765	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,44:31:126:0.349:2	./.	./.	./.	./.	./.	./.
chr2	152385774	rs201979610	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,79:33:144:0.549:2	./.	./.
chr2	152387553	rs4664475	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:76,70:29:147:0.479:2	0/1:40,38:28:78:0.487:2	0/1:12,5:29:17:0.294:2	./.	./.	0/1:86,67:29:153:0.438:2	0/1:0,161:29:161:1.00:2	0/1:4,162:30:166:0.976:2	0/1:107,55:29:164:0.340:2	0/1:82,60:29:142:0.423:2	0/1:94,64:29:159:0.405:2
chr2	152389991	rs114218081	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,51:32:86:0.593:2	./.	./.	./.	./.	./.	./.
chr2	152406159	rs368883773	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,76:31:139:0.547:2	./.
chr2	152408283	rs375307136	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,83:33:129:0.643:2	./.
chr2	152410342	rs190336010	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,59:27:117:0.504:2	./.	./.	0/1:43,35:27:78:0.449:2	./.
chr2	152422076	rs2288210	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:58,41:32:99:0.414:2	0/1:27,30:31:57:0.526:2	0/1:5,13:32:18:0.722:2	./.	0/1:57,27:32:84:0.321:2	0/1:45,53:32:98:0.541:2	0/1:1,72:32:75:0.986:2	0/1:1,84:32:85:0.988:2	0/1:52,40:32:92:0.435:2	0/1:45,53:32:98:0.541:2	0/1:76,33:32:109:0.303:2
chr2	152422087	rs2288211	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:47,42:32:89:0.472:2	0/1:25,26:32:51:0.510:2	./.	./.	./.	./.	0/1:1,53:32:54:0.981:2	./.	./.	0/1:35,43:32:78:0.551:2	./.
chr2	152425801	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:128:0.031:2	./.	./.	./.	./.
chr2	152432311	rs33988153	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,22:28:56:0.393:2	0/1:8,16:29:24:0.667:2	./.	0/1:31,23:28:54:0.426:2	0/1:21,13:27:34:0.382:2	./.	./.	./.	0/1:17,36:29:53:0.679:2	0/1:18,13:30:31:0.419:2	0/1:37,22:28:59:0.373:2
chr2	152436012	rs199749747	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:133,58:30:191:0.304:2	0/1:128,45:30:173:0.260:2	./.	./.	./.	./.	0/1:75,114:30:189:0.603:2	./.	./.	0/1:136,58:31:194:0.299:2	./.
chr2	152436106	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:169,26:31:195:0.133:2	./.	./.	./.	./.	./.	./.
chr2	152438012	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,4:30:77:0.052:2	./.	./.	0/1:182,8:29:190:0.042:2	./.	0/1:175,22:31:197:0.112:2	0/1:186,10:32:196:0.051:2	./.	0/1:184,11:32:195:0.056:2
chr2	152439037	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,18:30:99:0.182:2	./.	./.	./.	./.	./.
chr2	152439125	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,3:34:45:0.067:2	./.	./.	./.	./.	./.
chr2	152472538	rs372245772	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:141,4:31:145:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr2	152473911	rs149025191	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,64:33:160:0.400:2	./.	./.	./.	./.	./.	./.	0/1:102,63:33:165:0.382:2
chr2	152476028	rs10172023	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,15:33:26:0.577:2	0/1:149,4:33:153:0.026:2	./.	0/1:109,72:32:181:0.398:2	./.	0/1:0,174:33:174:1.00:2	0/1:79,93:33:172:0.541:2	./.	0/1:97,82:33:179:0.458:2
chr2	152483564	rs180847025	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:31:164:0.025:2	./.	./.	./.	./.
chr2	152484039	rs374760449	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,41:31:87:0.471:2	./.
chr2	152484226	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,6:32:139:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	152484301	.	T	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:138,6:30:144:0.042:2	./.	./.	0/1:151,6:29:157:0.038:2	./.	./.	./.	./.	./.	0/1:126,5:31:131:0.038:2	./.
chr2	152487705	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:32:197:0.025:2	./.	./.	./.
chr2	152496526	rs6713162	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,22:32:51:0.431:2	./.	./.	./.	./.	0/1:37,28:33:65:0.431:2	0/1:30,27:33:57:0.474:2	./.
chr2	152496908	rs115784515	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,6:29:185:0.032:2
chr2	152497088	rs61730771	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,5:30:188:0.027:2	./.	./.	./.	0/1:72,100:32:172:0.581:2	0/1:178,6:31:184:0.033:2
chr2	152499143	rs35974308	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,37:33:82:0.451:2	./.
chr2	152500371	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,5:30:190:0.026:2	./.	./.	./.
chr2	152500449	rs13013209	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:95,86:32:181:0.475:2	0/1:76,62:32:138:0.449:2	0/1:0,36:32:36:1.00:2	0/1:112,82:33:194:0.423:2	./.	0/1:2,170:32:172:0.988:2	./.	0/1:6,174:32:180:0.967:2	0/1:92,97:33:189:0.513:2	./.	0/1:2,187:32:189:0.989:2
chr2	152500521	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,6:31:181:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	152500551	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:177,5:31:182:0.027:2	0/1:131,4:30:135:0.030:2	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.
chr2	152514521	rs140186806	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,40:32:87:0.460:2	./.	./.
chr2	152515683	rs75807392	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,39:29:113:0.345:2	./.	./.	./.	./.	./.	./.	./.
chr2	152521096	rs10170273	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,36:32:106:0.343:2	./.	./.	./.	./.	0/1:50,41:33:91:0.451:2	0/1:37,22:32:59:0.373:2	./.
chr2	152527572	rs7426114	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,181:32:184:0.984:2	0/1:0,152:32:152:1.00:2	0/1:0,53:30:53:1.00:2	0/1:98,92:31:190:0.484:2	0/1:0,183:31:183:1.00:2	0/1:0,177:31:177:1.00:2	0/1:1,167:32:168:0.994:2	0/1:3,182:32:185:0.984:2	0/1:113,83:32:196:0.423:2	0/1:102,98:32:200:0.490:2	0/1:0,183:32:185:1.00:2
chr2	152527608	rs34577613	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,87:32:198:0.439:2	./.	./.	./.	./.	./.	0/1:104,77:32:181:0.425:2	./.
chr2	152527636	rs34800215	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,78:32:182:0.429:2	./.
chr2	152528910	rs35654397	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,86:33:199:0.432:2
chr2	152530992	rs115986826	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,26:32:78:0.333:2	./.	./.	./.	./.	./.	./.
chr2	152531077	rs6711382	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,99:33:100:0.990:2	0/1:1,62:33:63:0.984:2	0/1:0,17:33:17:1.00:2	0/1:55,59:33:114:0.518:2	0/1:0,93:33:93:1.00:2	0/1:2,100:33:102:0.980:2	0/1:0,102:33:102:1.00:2	0/1:4,124:33:128:0.969:2	0/1:1,104:33:105:0.990:2	0/1:33,54:33:87:0.621:2	0/1:1,99:33:100:0.990:2
chr2	152536498	rs6735208	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,136:32:136:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,25:31:25:1.00:2	0/1:73,83:31:156:0.532:2	0/1:1,136:31:137:0.993:2	0/1:0,132:31:132:1.00:2	0/1:2,128:32:130:0.985:2	0/1:4,122:32:126:0.968:2	0/1:78,68:32:146:0.466:2	0/1:80,69:32:149:0.463:2	0/1:76,76:32:152:0.500:2
chr2	152539234	rs75073923	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,7:22:81:0.088:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,15:19:120:0.126:2
chr2	152541487	rs114959904	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,47:31:134:0.351:2	./.	./.	./.	./.	./.
chr2	152551071	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:119,4:32:123:0.033:2	./.	./.	./.	./.	./.	./.	0/1:177,11:30:188:0.059:2	./.	./.	./.
chr2	152551084	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,11:29:179:0.061:2	./.	./.	./.
chr2	152551105	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:104,5:34:109:0.046:2	./.	./.	./.	./.	./.	0/1:87,5:34:92:0.054:2	0/1:131,11:32:142:0.077:2	./.	./.	./.
chr2	152551140	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,3:33:43:0.070:2	./.	./.	./.	./.
chr2	152573981	rs4611637	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:30:89:1.00:2	0/1:1,45:30:46:0.978:2	0/1:0,11:31:11:1.00:2	0/1:59,47:30:106:0.443:2	0/1:0,69:29:69:1.00:2	0/1:0,96:30:96:1.00:2	0/1:1,81:30:82:0.988:2	0/1:1,111:30:112:0.991:2	0/1:70,55:31:125:0.440:2	0/1:42,46:30:88:0.523:2	0/1:76,61:29:137:0.445:2
chr2	152579983	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:33:42:0.095:2	./.	./.
chr2	152663365	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:32:165:0.024:2	./.	./.	./.	./.	./.
chr2	152663406	rs61737675	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,54:32:111:0.486:2	./.
chr2	152698480	rs1805028	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,67:29:128:0.523:2	./.	./.	./.	./.	./.	./.	./.
chr2	152717331	rs61736804	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,28:29:52:0.538:2	./.
chr2	153004736	rs72864741	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:70,56:31:126:0.444:2	0/1:27,30:32:57:0.526:2	./.	./.	0/1:97,69:30:166:0.416:2	0/1:98,73:30:171:0.427:2	0/1:95,82:30:177:0.463:2	./.	0/1:118,77:32:195:0.395:2	0/1:104,83:31:187:0.444:2	./.
chr2	153192192	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:159,4:31:163:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr2	153378459	rs4664114	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,28:30:52:0.538:2	0/1:12,17:30:29:0.586:2	./.	0/1:2,78:31:80:0.975:2	0/1:0,39:31:39:1.00:2	0/1:0,65:31:65:1.00:2	0/1:22,17:31:40:0.436:2	0/1:35,44:30:79:0.557:2	0/1:1,72:31:73:0.986:2	./.	0/1:0,93:31:93:1.00:2
chr2	153405594	rs1155779	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,48:31:48:1.00:2	0/1:21,15:30:36:0.417:2	./.	0/1:36,16:31:52:0.308:2	0/1:29,39:31:68:0.574:2	0/1:38,41:32:79:0.519:2	0/1:41,14:32:55:0.255:2	0/1:38,29:32:67:0.433:2
chr2	153415244	rs35066174	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:31:4:1.00:2	0/1:4,16:32:20:0.800:2	0/1:7,3:31:10:0.300:2	0/1:11,6:31:17:0.353:2	./.	0/1:1,15:29:16:0.938:2	0/1:18,16:33:34:0.471:2	0/1:3,19:32:22:0.864:2	0/1:8,15:30:23:0.652:2
chr2	153435434	rs16831399	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:28,27:32:55:0.491:2
chr2	153468107	rs35776654	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:31:12:0.417:2	./.	./.	0/1:47,26:31:73:0.356:2	./.	0/1:50,18:31:68:0.265:2	./.	0/1:21,27:32:48:0.563:2	./.
chr2	153476105	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,7:31:9:0.778:2	./.	./.	./.	./.	./.
chr2	153514496	rs372511875	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,20:32:47:0.426:2	./.	./.	./.	./.
chr2	153532963	rs186386177	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,81:31:162:0.500:2	./.	./.	./.	./.
chr2	153533260	rs11544718	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,87:32:190:0.458:2	./.
chr2	153574092	rs2293680	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,5:31:11:0.455:2	./.
chr2	154996952	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,3:36:62:0.048:2	./.	./.	./.
chr2	155099399	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:33:128:0.031:2
chr2	155555878	rs3111033	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,24:31:42:0.571:2	./.	./.	./.	./.	./.
chr2	155555879	rs141745529	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,16:30:35:0.457:2
chr2	155711357	rs17642086	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:45,24:30:69:0.348:2	0/1:30,20:28:50:0.400:2	./.	0/1:22,31:30:53:0.585:2	./.	./.	0/1:35,22:27:57:0.386:2	./.	0/1:55,27:30:82:0.329:2	0/1:23,40:29:63:0.635:2	0/1:32,51:29:83:0.614:2
chr2	157186262	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:34:83:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	157406249	rs2116665	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,26:31:69:0.377:2	0/1:40,25:31:65:0.385:2	0/1:5,6:31:11:0.545:2	0/1:2,109:31:111:0.982:2	0/1:0,90:31:90:1.00:2	0/1:68,52:31:120:0.433:2	0/1:74,61:31:135:0.452:2	0/1:1,114:31:115:0.991:2	0/1:0,92:32:92:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,81:32:81:1.00:2
chr2	157425972	rs17266469	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,30:30:64:0.469:2	./.	./.	./.	./.	./.	./.
chr2	158115129	rs61748237	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:25,21:30:46:0.457:2	0/1:7,9:31:16:0.563:2	./.	./.	./.	./.	./.	0/1:34,17:30:51:0.333:2	0/1:35,24:32:59:0.407:2	./.	0/1:17,28:30:45:0.622:2
chr2	158140806	rs6759356	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,42:31:104:0.404:2	./.	0/1:60,55:32:115:0.478:2	0/1:62,47:32:109:0.431:2	./.	./.
chr2	158157361	rs3214040	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,42:32:80:0.525:2	0/1:15,27:31:42:0.643:2	0/1:0,3:30:3:1.00:2	0/1:1,89:31:90:0.989:2	0/1:0,134:31:135:1.00:2	0/1:0,102:31:102:1.00:2	0/1:50,42:31:92:0.457:2	0/1:0,93:31:93:1.00:2	0/1:63,56:33:119:0.471:2	0/1:0,80:32:80:1.00:2	0/1:0,111:32:111:1.00:2
chr2	158272449	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,37:29:125:0.296:2	0/1:40,17:29:57:0.298:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	158291188	rs11904180	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,51:32:110:0.464:2	0/1:49,34:31:83:0.410:2	0/1:0,11:32:11:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,61:32:61:1.00:2	0/1:1,122:32:123:0.992:2	0/1:0,127:33:127:1.00:2	0/1:1,122:31:123:0.992:2	0/1:0,179:32:179:1.00:2
chr2	158390468	rs7594480	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,7:32:22:0.318:2	0/1:7,10:32:17:0.588:2	./.	./.	./.	0/1:13,15:32:28:0.536:2	./.	./.	./.	./.	./.
chr2	158390503	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,4:32:15:0.267:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	158443723	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,82:30:175:0.469:2	./.	./.	./.	./.	./.
chr2	158443889	rs4556933	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,9:31:13:0.692:2	0/1:63,68:30:131:0.519:2	0/1:68,75:30:143:0.524:2	0/1:81,59:30:140:0.421:2	0/1:79,46:30:125:0.368:2	0/1:85,78:30:163:0.479:2	0/1:0,149:31:149:1.00:2	./.	0/1:50,96:30:146:0.658:2
chr2	158626980	rs1146031	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,51:30:52:0.981:2	0/1:0,43:32:43:1.00:2	0/1:1,10:31:11:0.909:2	0/1:2,78:31:80:0.975:2	0/1:0,63:29:63:1.00:2	0/1:31,45:31:76:0.592:2	0/1:0,88:31:88:1.00:2	0/1:2,92:31:94:0.979:2	0/1:0,76:32:76:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,66:30:66:1.00:2
chr2	158636910	rs2227861	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,31:33:52:0.596:2	0/1:22,23:32:45:0.511:2	0/1:0,10:33:10:1.00:2	0/1:0,82:32:82:1.00:2	0/1:39,27:32:66:0.409:2	0/1:39,45:32:84:0.536:2	0/1:0,81:32:81:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,77:33:77:1.00:2	0/1:38,34:33:72:0.472:2	0/1:0,76:33:76:1.00:2
chr2	159033054	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:29:197:0.025:2	./.	./.	./.
chr2	159166069	rs7559772	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,131:33:131:1.00:2	0/1:1,78:33:79:0.987:2	0/1:0,17:32:17:1.00:2	0/1:66,71:33:137:0.518:2	0/1:1,110:32:111:0.991:2	0/1:0,124:32:124:1.00:2	0/1:56,81:33:137:0.591:2	0/1:0,140:33:140:1.00:2	0/1:0,160:34:160:1.00:2	0/1:59,53:33:113:0.473:2	0/1:0,155:34:155:1.00:2
chr2	159195282	rs16842890	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,17:31:53:0.321:2
chr2	159195562	rs61746487	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,56:30:131:0.427:2	./.	./.	./.
chr2	159196771	rs12620556	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,78:30:195:0.400:2
chr2	159201754	rs4664950	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,74:30:189:0.392:2	./.	./.	./.	./.	./.	0/1:106,81:30:187:0.433:2	0/1:111,70:30:181:0.387:2
chr2	159222561	rs13401538	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,70:29:160:0.438:2
chr2	159434727	rs10933494	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,30:32:68:0.441:2	./.	./.	0/1:64,51:32:115:0.443:2
chr2	159514812	rs8272	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,48:32:120:0.400:2	./.	./.
chr2	159517857	rs9459	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,9:33:22:0.409:2	./.	./.
chr2	159519588	rs150480813	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.
chr2	159535127	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:31:141:0.028:2	./.	./.	./.	./.	./.
chr2	159535158	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,9:31:191:0.047:2	./.	./.	./.	./.	./.
chr2	159660870	rs17810398	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:18,18:32:36:0.500:2	0/1:8,16:31:24:0.667:2	./.	0/1:33,26:31:59:0.441:2	./.	./.	0/1:7,8:32:15:0.533:2	./.	./.	./.	./.
chr2	159663599	rs9869	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,35:29:57:0.614:2	0/1:17,16:30:33:0.485:2	./.	./.	0/1:0,38:29:38:1.00:2	0/1:32,25:30:57:0.439:2	./.	0/1:53,45:30:98:0.459:2	0/1:52,24:30:76:0.316:2	./.	0/1:46,29:29:75:0.387:2
chr2	159663615	rs149042644	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:34:60:0.067:2	./.	./.
chr2	159663616	rs12535	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:31:8:1.00:2	./.	0/1:28,15:30:43:0.349:2	0/1:26,27:31:53:0.509:2	0/1:28,20:32:48:0.417:2	./.	0/1:21,36:31:57:0.632:2	0/1:45,30:31:75:0.400:2	./.
chr2	159672251	rs61740880	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,33:31:55:0.600:2	./.	./.	./.	./.	./.	./.
chr2	159672252	rs61740878	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,21:31:55:0.382:2	./.	./.	0/1:34,35:32:69:0.507:2	./.	./.	./.
chr2	159672322	rs138143887	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,16:30:39:0.410:2	./.	./.	./.	./.	./.	./.
chr2	159954175	rs34588551	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,60:32:60:1.00:2	0/1:0,27:32:27:1.00:2	./.	./.	./.	0/1:38,25:31:63:0.397:2	0/1:2,63:32:65:0.969:2	./.	./.	0/1:24,28:32:52:0.538:2	./.
chr2	160005762	rs193207814	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,66:30:146:0.452:2	./.	./.	./.
chr2	160019863	rs12466551	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,156:32:156:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,185:32:185:1.00:2	0/1:0,121:32:121:1.00:2	0/1:0,171:32:171:1.00:2	0/1:0,118:32:118:1.00:2	0/1:0,190:32:190:1.00:2	0/1:0,194:33:194:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,194:32:194:1.00:2
chr2	160027235	rs201043889	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:87,49:28:137:0.360:2	./.	./.	./.	./.	./.	./.
chr2	160031488	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:33:56:0.071:2	./.	./.
chr2	160035195	rs12988603	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,109:30:112:0.973:2	0/1:2,65:31:67:0.970:2	./.	./.	./.	0/1:83,69:28:152:0.454:2	0/1:5,118:30:123:0.959:2	./.	./.	0/1:65,44:30:109:0.404:2	0/1:57,58:30:115:0.504:2
chr2	160035207	rs6748288	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,107:29:107:1.00:2	0/1:0,64:28:64:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,122:29:122:1.00:2	0/1:0,129:28:129:1.00:2	0/1:0,131:29:131:1.00:2	0/1:0,115:28:115:1.00:2	0/1:1,134:29:135:0.993:2	0/1:0,116:30:116:1.00:2	0/1:0,105:29:105:1.00:2	0/1:0,96:29:96:1.00:2
chr2	160075854	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:32:152:0.026:2	./.	./.	./.
chr2	160084473	rs2288110	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,39:33:40:0.975:2	0/1:11,7:34:18:0.389:2	0/1:31,8:33:39:0.205:2	./.	0/1:12,10:33:22:0.455:2	0/1:12,8:34:20:0.400:2	0/1:12,6:33:18:0.333:2	0/1:16,21:32:37:0.568:2
chr2	160086653	rs4664276	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,44:32:44:1.00:2	0/1:46,16:31:62:0.258:2	0/1:44,20:32:64:0.313:2	./.	0/1:48,19:32:67:0.284:2	0/1:28,20:33:48:0.417:2	0/1:35,21:31:56:0.375:2	0/1:42,17:33:59:0.288:2
chr2	160086654	rs55738533	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,44:32:44:1.00:2	0/1:44,16:32:61:0.267:2	0/1:45,20:32:65:0.308:2	./.	0/1:48,19:32:67:0.284:2	0/1:28,19:33:48:0.404:2	0/1:34,21:31:56:0.382:2	0/1:40,18:31:58:0.310:2
chr2	160086692	rs3821296	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,55:29:55:1.00:2	0/1:47,17:29:64:0.266:2	0/1:46,20:29:66:0.303:2	./.	0/1:48,22:29:70:0.314:2	0/1:30,18:30:49:0.375:2	0/1:31,13:28:44:0.295:2	0/1:49,20:28:69:0.290:2
chr2	160112881	rs7591849	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,40:32:40:1.00:2	0/1:0,19:32:19:1.00:2	0/1:1,2:32:3:0.667:2	./.	0/1:24,11:32:35:0.314:2	0/1:23,19:30:42:0.452:2	0/1:0,16:32:16:1.00:2	./.	0/1:37,14:33:51:0.275:2	0/1:30,22:32:52:0.423:2	0/1:29,25:32:54:0.463:2
chr2	160114437	rs3213715	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,62:33:62:1.00:2	0/1:0,38:33:38:1.00:2	0/1:3,4:31:7:0.571:2	./.	0/1:41,23:32:64:0.359:2	0/1:47,37:31:84:0.440:2	0/1:2,35:33:37:0.946:2	./.	0/1:68,44:33:112:0.393:2	0/1:47,46:33:93:0.495:2	0/1:72,72:33:144:0.500:2
chr2	160136337	rs174264	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:33:85:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,118:32:118:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,141:32:141:1.00:2	0/1:0,128:33:128:1.00:2	0/1:0,127:32:127:1.00:2	0/1:0,142:33:142:1.00:2
chr2	160182302	rs415793	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,9:32:13:0.692:2	0/1:102,61:31:163:0.374:2	0/1:51,31:32:82:0.378:2	./.	./.	0/1:89,70:32:159:0.440:2	./.	0/1:65,74:32:139:0.532:2	./.
chr2	160182330	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:159,4:31:163:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr2	160205324	rs11679175	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,27:30:67:0.403:2	0/1:13,10:31:23:0.435:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	160289863	rs61733380	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,26:30:65:0.400:2	0/1:36,37:33:73:0.507:2	./.	./.	./.	./.	./.	./.
chr2	160294842	rs3213790	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,27:32:48:0.563:2	./.	./.	./.	./.	./.	./.
chr2	160294977	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:31:130:0.031:2	./.	./.	./.	./.	./.
chr2	160310246	rs10202670	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,20:29:61:0.328:2	./.	./.	./.	./.	./.	./.
chr2	160604372	rs149252951	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,94:33:175:0.537:2	./.	./.	./.	./.	./.	0/1:66,73:33:139:0.525:2	0/1:119,76:33:195:0.390:2
chr2	160604379	rs16844275	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,84:33:196:0.429:2	./.	./.
chr2	160604420	rs147683093	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:33:159:0.025:2	./.	./.	./.
chr2	160604452	rs11555185	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:31:8:1.00:2	0/1:0,102:32:102:1.00:2	./.	0/1:0,91:31:91:1.00:2	0/1:41,42:32:83:0.506:2	./.	./.	0/1:36,45:31:81:0.556:2	0/1:83,62:31:145:0.428:2
chr2	160604768	rs141659304	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,20:31:36:0.556:2	./.	./.
chr2	160604812	rs1427329	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,40:33:40:1.00:2	0/1:0,38:33:38:1.00:2	./.	./.	0/1:20,29:32:49:0.592:2	./.	0/1:13,30:32:43:0.698:2	0/1:30,25:33:55:0.455:2	0/1:43,22:34:65:0.338:2	0/1:18,19:32:37:0.514:2	0/1:39,28:33:67:0.418:2
chr2	160604936	rs13024801	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,11:32:31:0.355:2	./.	./.	./.	./.	./.	./.
chr2	160605268	rs1365803	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,56:31:56:1.00:2	0/1:2,43:32:45:0.956:2	0/1:0,55:32:55:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,58:32:58:1.00:2
chr2	160605373	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,6:29:9:0.667:2	0/1:0,8:28:8:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	160639970	rs2114626	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,30:27:30:1.00:2	0/1:1,19:27:20:0.950:2	./.	./.	0/1:17,29:28:46:0.630:2	./.	0/1:15,9:28:24:0.375:2	0/1:25,14:27:39:0.359:2	0/1:12,19:29:31:0.613:2	0/1:12,21:29:33:0.636:2	0/1:28,19:28:47:0.404:2
chr2	160673526	rs2059696	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,50:31:51:0.980:2	./.	0/1:2,42:31:44:0.955:2	0/1:24,23:30:47:0.489:2	./.	./.	0/1:21,24:32:45:0.533:2	0/1:31,27:32:58:0.466:2
chr2	160676350	rs17827158	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,22:32:37:0.595:2	./.	./.	./.	./.	./.	./.
chr2	160676427	rs12692566	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,19:32:31:0.613:2	0/1:15,13:32:28:0.464:2	./.	0/1:0,31:31:31:1.00:2	0/1:15,7:31:22:0.318:2	0/1:0,23:31:23:1.00:2	0/1:22,5:32:27:0.185:2	0/1:21,9:32:30:0.300:2	0/1:18,21:32:40:0.538:2	0/1:19,14:33:33:0.424:2	0/1:0,44:32:44:1.00:2
chr2	160710216	rs41264211	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:20,27:33:47:0.574:2	0/1:15,14:33:29:0.483:2	./.	./.	0/1:29,37:32:66:0.561:2	./.	0/1:31,42:33:73:0.575:2	./.	./.	./.	./.
chr2	160710922	rs2729705	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,16:31:16:1.00:2	0/1:1,98:31:99:0.990:2	./.	0/1:0,118:30:118:1.00:2	0/1:59,34:32:93:0.366:2	0/1:1,101:31:102:0.990:2	0/1:79,61:32:140:0.436:2	0/1:0,99:31:99:1.00:2	0/1:69,68:31:137:0.496:2
chr2	160711045	rs3951216	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:2,110:33:112:0.982:2	0/1:0,52:33:52:1.00:2	./.	./.	0/1:0,70:32:70:1.00:2	./.	0/1:62,44:33:106:0.415:2	./.	0/1:96,69:34:165:0.418:2	./.	0/1:91,61:33:152:0.401:2
chr2	160729005	rs1397706	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,34:31:78:0.436:2	./.	./.	./.
chr2	160737621	rs11675155	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,33:30:81:0.407:2	0/1:32,8:30:40:0.200:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,37:31:108:0.343:2
chr2	160738677	rs16822581	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,31:32:65:0.477:2	0/1:29,24:32:53:0.453:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,52:32:114:0.456:2
chr2	160743040	rs2271381	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,6:31:6:1.00:2	./.	./.	./.	0/1:2,3:34:5:0.600:2	./.	./.
chr2	160808075	rs3828323	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,19:32:20:0.950:2	0/1:1,136:32:137:0.993:2	./.	0/1:3,128:32:131:0.977:2	0/1:63,64:32:127:0.504:2	./.	0/1:81,72:33:153:0.471:2	0/1:0,125:32:125:1.00:2	0/1:92,76:32:168:0.452:2
chr2	160826651	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,15:31:21:0.714:2	./.	./.	./.	./.	./.
chr2	160833188	rs2715918	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:87,64:28:151:0.424:2	0/1:44,28:27:72:0.389:2	0/1:0,15:28:15:1.00:2	./.	0/1:0,122:28:122:1.00:2	0/1:1,137:28:138:0.993:2	0/1:0,126:28:126:1.00:2	0/1:102,64:28:166:0.386:2	0/1:82,86:28:168:0.512:2	0/1:0,130:28:130:1.00:2	0/1:0,175:28:176:1.00:2
chr2	160843680	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,5:29:196:0.026:2
chr2	160876670	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,63:31:126:0.500:2	0/1:33,30:31:63:0.476:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	160879259	rs33985939	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,34:31:69:0.493:2	./.	./.	./.	./.
chr2	160885418	rs35771982	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,13:33:13:1.00:2	0/1:0,157:32:157:1.00:2	./.	0/1:2,154:32:157:0.987:2	0/1:82,53:33:135:0.393:2	./.	0/1:96,59:33:155:0.381:2	0/1:0,136:33:136:1.00:2	0/1:103,81:32:184:0.440:2
chr2	160885442	rs3749117	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:31:8:1.00:2	0/1:0,126:32:126:1.00:2	./.	0/1:0,116:31:116:1.00:2	0/1:69,49:31:118:0.415:2	./.	0/1:79,41:31:120:0.342:2	0/1:0,94:32:94:1.00:2	0/1:86,72:31:159:0.456:2
chr2	160901517	rs4665143	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,34:28:77:0.442:2	0/1:14,35:30:49:0.714:2	0/1:0,9:31:9:1.00:2	0/1:0,79:29:80:1.00:2	./.	0/1:0,106:28:106:1.00:2	./.	0/1:48,37:28:85:0.435:2	0/1:0,112:29:112:1.00:2	0/1:0,65:27:65:1.00:2	0/1:0,90:28:90:1.00:2
chr2	160918804	.	A	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,10:15:52:0.192:2	./.	./.	0/1:88,35:16:123:0.285:2	0/1:58,28:14:86:0.326:2	0/1:67,15:14:82:0.183:2	0/1:70,14:13:84:0.167:2	0/1:105,37:15:142:0.261:2	0/1:60,14:14:74:0.189:2	0/1:54,20:14:74:0.270:2	0/1:26,8:15:34:0.235:2
chr2	160968628	rs16844790	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,91:29:197:0.462:2	./.	./.	./.
chr2	160983060	rs2305819	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,39:31:90:0.433:2	./.	./.	./.	0/1:53,42:32:95:0.442:2	0/1:46,32:32:78:0.410:2	0/1:40,37:32:77:0.481:2	0/1:37,48:31:85:0.565:2
chr2	161029218	rs2305818	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:31:3:1.00:2	0/1:3,54:30:57:0.947:2	./.	0/1:2,47:29:49:0.959:2	./.	0/1:32,36:30:68:0.529:2	0/1:0,46:31:46:1.00:2	0/1:0,47:30:47:1.00:2	0/1:40,27:29:68:0.403:2
chr2	161157209	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:33:100:0.040:2	./.	./.	./.
chr2	161157239	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:29:67:0.060:2	./.	./.	./.
chr2	161159999	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:31:88:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	161174693	rs1430	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,18:31:18:1.00:2	./.	0/1:0,25:32:25:1.00:2	./.	0/1:0,23:32:23:1.00:2	0/1:15,19:33:34:0.559:2	0/1:14,5:32:19:0.263:2	0/1:21,13:32:34:0.382:2
chr2	162273232	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.	./.	./.	./.
chr2	162696414	rs2084543	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:42,44:32:86:0.512:2	0/1:13,15:31:28:0.536:2	./.	./.	./.	./.	./.	0/1:66,71:32:137:0.518:2	./.	./.	0/1:42,41:31:83:0.494:2
chr2	162760646	rs61748242	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,24:31:68:0.353:2	./.	./.	./.	./.	./.
chr2	162762296	rs61761953	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,68:32:159:0.428:2	./.	./.	./.	./.
chr2	162865133	rs41268649	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,37:32:75:0.493:2	./.	./.	./.
chr2	162875324	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.	./.
chr2	162890142	rs56179129	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,30:31:66:0.455:2	0/1:14,12:31:26:0.462:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	162929979	rs17574	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,70:32:72:0.986:2	0/1:0,35:32:35:1.00:2	./.	0/1:58,46:32:104:0.442:2	./.	./.	0/1:86,64:32:150:0.427:2	0/1:50,55:32:105:0.524:2	0/1:40,43:32:83:0.518:2	0/1:33,26:33:59:0.441:2	0/1:57,34:33:91:0.374:2
chr2	163005674	rs5645	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,31:30:83:0.373:2	./.	./.	./.	./.	./.
chr2	163029378	rs80245757	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,32:33:60:0.533:2	0/1:20,27:31:47:0.574:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	163080982	rs16846391	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,20:32:38:0.526:2	./.	./.	./.	./.	./.
chr2	163124051	rs1990760	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,55:32:56:1.00:2	0/1:0,32:32:32:1.00:2	./.	0/1:36,35:32:71:0.493:2	0/1:4,15:32:19:0.789:2	./.	0/1:1,29:31:30:0.967:2	0/1:3,43:31:46:0.935:2	0/1:0,83:32:83:1.00:2	0/1:34,20:31:54:0.370:2	0/1:53,30:32:83:0.361:2
chr2	163124596	rs35732034	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,44:33:99:0.444:2	0/1:26,31:32:57:0.544:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	163128824	rs3747517	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,163:30:165:0.988:2	0/1:0,109:29:109:1.00:2	0/1:29,8:28:37:0.216:2	0/1:101,89:30:190:0.468:2	0/1:3,190:30:193:0.984:2	0/1:68,113:30:181:0.624:2	0/1:1,176:30:178:0.994:2	0/1:0,184:30:184:1.00:2	0/1:0,181:31:181:1.00:2	0/1:1,183:30:184:0.995:2	0/1:108,75:29:183:0.410:2
chr2	163133396	rs72650663	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,55:31:116:0.474:2	0/1:49,40:32:89:0.449:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	163136505	rs35337543	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,33:33:80:0.418:2	0/1:29,22:32:51:0.431:2	./.	0/1:36,32:33:68:0.471:2	0/1:36,22:30:58:0.379:2	./.	./.	./.	./.	./.	./.
chr2	163137871	rs12479043	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,54:32:138:0.391:2	./.	./.	./.	./.	./.
chr2	163137872	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:33:177:0.023:2
chr2	163137983	rs10930046	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,63:29:135:0.467:2	./.	./.	./.	./.	./.
chr2	163150122	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:32:120:0.033:2
chr2	163208893	rs17783344	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:31:7:0.714:2	./.	0/1:41,25:32:66:0.379:2	./.	./.	./.	./.	0/1:40,33:33:73:0.452:2	./.
chr2	163228539	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:33:109:0.037:2	./.	./.
chr2	163236480	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:31:157:0.025:2
chr2	163253271	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:34:97:0.041:2
chr2	164466243	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,14:32:102:0.137:2	./.
chr2	165353712	rs8192673	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,34:31:82:0.415:2	0/1:28,19:31:47:0.404:2	0/1:0,14:30:14:1.00:2	0/1:82,43:31:125:0.344:2	0/1:0,87:30:87:1.00:2	0/1:58,40:31:98:0.408:2	0/1:3,105:31:108:0.972:2	0/1:91,50:31:141:0.355:2	0/1:0,91:32:91:1.00:2	0/1:0,84:30:84:1.00:2	0/1:0,106:32:106:1.00:2
chr2	165381531	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,4:32:53:0.075:2	./.	./.	./.	./.	./.	./.	./.
chr2	165476253	rs61748245	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,162:32:163:0.994:2	0/1:0,98:32:98:1.00:2	0/1:8,10:31:18:0.556:2	0/1:93,92:31:185:0.497:2	0/1:1,122:31:124:0.992:2	./.	0/1:99,71:31:170:0.418:2	0/1:113,86:31:199:0.432:2	0/1:1,198:32:199:0.995:2	0/1:0,162:31:162:1.00:2	0/1:118,80:31:198:0.404:2
chr2	165551201	rs7607980	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:34:3:1.00:2	./.	./.	0/1:34,40:33:74:0.541:2	./.	0/1:41,32:34:73:0.438:2	0/1:30,38:34:68:0.559:2	./.	./.
chr2	165551404	rs17244632	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:32,24:32:56:0.429:2	0/1:8,13:32:21:0.619:2	0/1:5,3:31:8:0.375:2	./.	./.	./.	./.	./.	0/1:44,24:30:68:0.353:2	./.	0/1:35,34:32:69:0.493:2
chr2	165552222	rs116305649	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,71:32:188:0.378:2	./.	./.	./.	./.
chr2	165586466	rs13392281	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,40:31:105:0.381:2	./.	./.	0/1:60,63:31:123:0.512:2	./.	0/1:63,72:32:135:0.533:2
chr2	165630201	rs355863	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,3:32:13:0.231:2	./.	./.	0/1:13,9:31:22:0.409:2	0/1:16,9:32:25:0.360:2	./.	./.	./.	./.
chr2	165698547	rs2279982	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,10:32:16:0.625:2	./.	./.	0/1:3,6:32:9:0.667:2
chr2	165793883	rs143997426	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,9:33:22:0.409:2	./.	./.	./.
chr2	165811232	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:30:66:0.061:2	./.
chr2	165947161	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:145,5:32:150:0.033:2	./.	./.	./.	./.	./.	./.	0/1:167,4:32:171:0.023:2	./.	./.	./.
chr2	165947269	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:33:138:0.029:2	./.
chr2	165947311	rs75324726	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:33:199:0.020:2	./.
chr2	165986505	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2	./.
chr2	165987772	rs62174900	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,49:33:121:0.405:2	0/1:43,43:32:86:0.500:2	./.
chr2	165996107	rs1946892	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:30:8:0.375:2	0/1:51,55:32:106:0.519:2	0/1:49,31:33:80:0.388:2	./.	./.	0/1:82,36:32:118:0.305:2	0/1:52,38:34:90:0.422:2	0/1:0,64:33:64:1.00:2	./.
chr2	165997209	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,6:31:153:0.039:2	./.	./.	./.
chr2	165997260	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,6:31:197:0.030:2	./.	./.	./.
chr2	166003479	rs16850131	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,43:31:118:0.364:2	0/1:54,58:30:113:0.518:2	./.
chr2	166011088	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:32:62:0.065:2	./.	./.	./.	./.
chr2	166020180	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,5:32:68:0.074:2	./.	./.	./.	./.	./.	./.
chr2	166152389	rs17183814	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,25:32:80:0.313:2	./.	./.	./.	./.	0/1:40,33:32:73:0.452:2	./.
chr2	166165679	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,5:31:83:0.060:2	./.	./.	./.
chr2	166179779	rs141815642	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,65:30:145:0.448:2	./.	./.	./.	./.	./.
chr2	166201163	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:106,5:32:111:0.045:2	./.	0/1:162,4:32:166:0.024:2	0/1:150,6:32:156:0.038:2	0/1:173,5:32:178:0.028:2	0/1:108,6:29:114:0.053:2	./.	./.	./.	0/1:185,5:32:193:0.026:2
chr2	166223736	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:33:52:0.077:2	./.	./.	./.	./.	./.
chr2	166237687	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,4:30:109:0.037:2	./.	./.	./.	0/1:97,4:31:101:0.040:2	./.	./.	./.
chr2	166243293	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:34:147:0.027:2
chr2	166243333	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:163,6:31:169:0.036:2	./.	./.	./.	./.	./.	./.
chr2	166243400	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,5:31:150:0.033:2	./.	./.	./.	./.
chr2	166245167	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:31:126:0.032:2	./.	./.	./.
chr2	166245230	rs2060198	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:30:12:0.500:2	./.	./.	0/1:82,60:31:142:0.423:2	./.	./.	./.	./.	./.
chr2	166245762	rs147084515	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,5:30:191:0.026:2	0/1:129,8:30:137:0.058:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	166514393	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,7:18:67:0.104:2	0/1:57,11:18:68:0.162:2	./.	./.
chr2	166535883	rs61738743	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,17:32:46:0.370:2	./.	./.	./.	./.	./.
chr2	166535918	rs777346	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,60:32:63:0.952:2	0/1:0,45:31:45:1.00:2	0/1:7,5:32:12:0.417:2	0/1:27,34:31:61:0.557:2	0/1:0,42:31:42:1.00:2	./.	0/1:36,26:32:62:0.419:2	0/1:42,25:31:67:0.373:2	0/1:0,71:32:71:1.00:2	./.	./.
chr2	166606326	rs146521644	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,60:31:121:0.496:2	./.	./.	./.	./.	./.	0/1:62,89:32:151:0.589:2
chr2	166618262	rs1968294	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:0,19:32:19:1.00:2	0/1:2,3:31:5:0.600:2	0/1:21,6:31:27:0.222:2	0/1:0,32:32:32:1.00:2	./.	0/1:14,21:31:35:0.600:2	0/1:0,31:31:31:1.00:2	0/1:1,42:33:43:0.977:2	0/1:19,27:32:46:0.587:2	./.
chr2	166627079	rs149809222	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,18:32:39:0.462:2	./.	./.	./.
chr2	166740469	rs115504901	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,77:32:173:0.445:2
chr2	166770120	rs10176588	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,31:33:78:0.397:2	0/1:21,29:33:50:0.580:2	0/1:10,15:33:25:0.600:2	0/1:37,62:32:99:0.626:2	0/1:43,52:32:95:0.547:2	0/1:0,105:32:105:1.00:2	0/1:1,102:32:103:0.990:2	0/1:2,127:32:130:0.984:2	0/1:57,66:33:123:0.537:2	./.	./.
chr2	166773971	rs6750044	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:79,53:32:132:0.402:2	0/1:39,47:32:86:0.547:2	0/1:3,10:31:13:0.769:2	0/1:72,52:31:124:0.419:2	0/1:47,39:31:86:0.453:2	0/1:2,103:31:105:0.981:2	0/1:3,85:31:88:0.966:2	0/1:1,116:31:117:0.991:2	0/1:63,56:33:119:0.471:2	./.	./.
chr2	166788336	rs7592429	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:32:53:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,68:33:68:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,90:32:90:1.00:2
chr2	166789554	rs74447004	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,13:33:30:0.433:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	166797646	rs1432273	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:38,39:30:77:0.506:2	0/1:23,28:31:51:0.549:2	./.	0/1:47,47:31:94:0.500:2	0/1:44,26:31:70:0.371:2	./.	./.	./.	0/1:49,52:31:101:0.515:2	0/1:0,64:31:64:1.00:2	0/1:1,110:31:111:0.991:2
chr2	166810159	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	0/1:4,8:31:12:0.667:2	./.	./.	./.	./.	./.
chr2	166810161	rs59477041	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	0/1:4,8:26:12:0.667:2	./.	./.	./.	./.	./.
chr2	166848163	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:32:98:0.041:2	./.
chr2	166848187	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:32:97:0.041:2	./.
chr2	166848225	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:33:71:0.056:2	./.
chr2	166848346	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:31:134:0.030:2	./.	./.	./.	./.
chr2	166848837	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,6:32:165:0.036:2	./.	./.	./.
chr2	166848838	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,6:31:164:0.037:2	./.	./.	./.
chr2	166848862	rs369650500	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:33:124:0.032:2	./.	0/1:129,8:32:137:0.058:2	./.	./.	./.
chr2	166892788	rs2298771	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:99,73:33:172:0.424:2	0/1:80,46:32:126:0.365:2	0/1:15,12:31:27:0.444:2	0/1:0,157:31:157:1.00:2	0/1:0,138:31:138:1.00:2	0/1:3,148:31:152:0.980:2	0/1:0,123:32:123:1.00:2	0/1:1,151:31:152:0.993:2	0/1:110,78:32:188:0.415:2	0/1:71,80:31:151:0.530:2	0/1:115,79:32:194:0.407:2
chr2	166897864	rs6432860	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,37:30:76:0.487:2	0/1:17,17:30:34:0.500:2	0/1:7,5:29:12:0.417:2	0/1:1,101:30:102:0.990:2	0/1:0,63:30:63:1.00:2	0/1:0,127:29:127:1.00:2	0/1:1,68:30:69:0.986:2	0/1:0,69:30:69:1.00:2	0/1:56,36:32:92:0.391:2	0/1:39,42:30:81:0.519:2	0/1:55,47:29:102:0.461:2
chr2	166903445	rs7580482	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,54:33:91:0.593:2	0/1:28,34:32:62:0.548:2	0/1:3,12:32:15:0.800:2	0/1:0,99:32:99:1.00:2	0/1:0,44:31:44:1.00:2	0/1:1,91:32:93:0.989:2	0/1:0,58:33:58:1.00:2	0/1:0,84:32:84:1.00:2	0/1:51,53:33:104:0.510:2	0/1:48,51:32:99:0.515:2	0/1:61,77:32:139:0.558:2
chr2	166909378	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:157,5:30:162:0.031:2	./.	./.	./.	./.	./.	./.
chr2	166909417	rs200975276	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:111,4:30:115:0.035:2	./.	./.	./.	./.	./.	./.
chr2	167055193	rs200785571	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,69:32:136:0.507:2	0/1:50,30:32:80:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	167056311	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,6:34:146:0.041:2	./.	./.
chr2	167056337	rs149207258	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:31:15:0.400:2	./.	./.	0/1:66,22:30:88:0.250:2	./.	./.	./.	./.	./.
chr2	167060696	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,4:31:95:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr2	167060927	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,5:30:64:0.078:2	./.	./.	./.
chr2	167060957	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:31:63:0.063:2	./.	./.	./.
chr2	167060974	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:32:49:0.082:2	./.	0/1:42,4:33:46:0.087:2	./.
chr2	167094638	rs141268327	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,42:33:107:0.393:2	./.	./.	./.	./.
chr2	167099158	rs6746030	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:30:88:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,14:30:14:1.00:2	0/1:1,89:31:90:0.989:2	0/1:41,35:30:76:0.461:2	0/1:0,75:30:75:1.00:2	0/1:1,76:30:77:0.987:2	./.	0/1:0,103:31:103:1.00:2	0/1:0,98:30:98:1.00:2	0/1:0,109:30:109:1.00:2
chr2	167108345	rs200160858	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,13:31:54:0.241:2	./.	./.	./.	./.	./.	./.
chr2	167142979	rs58022607	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,44:31:99:0.444:2	./.	./.	./.	./.	./.
chr2	167144974	rs6747673	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:31:60:1.00:2	0/1:2,49:31:51:0.961:2	0/1:3,3:32:6:0.500:2	0/1:39,31:31:70:0.443:2	0/1:30,24:31:54:0.444:2	0/1:60,41:31:101:0.406:2	0/1:41,17:31:58:0.293:2	0/1:0,67:31:67:1.00:2	0/1:54,42:32:96:0.438:2	0/1:42,20:32:62:0.323:2	0/1:0,82:32:82:1.00:2
chr2	167144995	rs13402180	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,42:33:75:0.560:2	0/1:42,19:33:61:0.311:2	0/1:3,5:32:8:0.625:2	0/1:41,43:33:84:0.512:2	./.	./.	0/1:48,22:32:70:0.314:2	0/1:1,87:32:88:0.989:2	0/1:70,53:33:123:0.431:2	0/1:51,27:33:78:0.346:2	0/1:0,101:33:101:1.00:2
chr2	167145106	rs58465962	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,13:30:30:0.433:2	./.	./.	./.	./.	./.
chr2	167145142	rs13414203	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:10,8:33:18:0.444:2	0/1:8,6:31:14:0.429:2	./.	0/1:10,8:30:18:0.444:2	./.	./.	0/1:8,7:31:15:0.467:2	0/1:0,18:30:18:1.00:2	0/1:7,9:32:16:0.563:2	./.	0/1:0,15:31:15:1.00:2
chr2	167160593	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:29:71:0.056:2	0/1:88,4:30:92:0.043:2	./.	./.	./.
chr2	167163043	rs9646771	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:30:85:1.00:2	0/1:0,40:29:40:1.00:2	0/1:7,6:31:13:0.462:2	0/1:67,47:31:114:0.412:2	0/1:0,61:30:61:1.00:2	0/1:78,35:30:113:0.310:2	0/1:0,47:30:47:1.00:2	0/1:0,86:29:86:1.00:2	0/1:66,40:31:106:0.377:2	./.	0/1:89,50:30:139:0.360:2
chr2	167168093	rs6432901	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:31:65:1.00:2	0/1:0,32:31:32:1.00:2	0/1:2,5:32:7:0.714:2	0/1:49,39:30:88:0.443:2	0/1:0,56:30:56:1.00:2	0/1:31,45:30:76:0.592:2	0/1:1,73:31:74:0.986:2	0/1:0,88:31:88:1.00:2	0/1:67,23:32:90:0.256:2	./.	0/1:51,64:31:115:0.557:2
chr2	167262088	rs16852112	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,59:33:60:0.983:2	./.	0/1:24,29:32:54:0.547:2	./.
chr2	167262169	rs35344714	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,17:33:31:0.548:2	./.	./.	./.	./.	0/1:1,190:33:191:0.995:2	./.	0/1:86,99:32:185:0.535:2	./.
chr2	167262353	rs3791251	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:32:13:0.462:2	./.	./.	./.	./.	0/1:0,68:32:68:1.00:2	./.	0/1:46,43:33:89:0.483:2	./.
chr2	167262429	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:31:73:0.055:2	./.	./.	./.	./.	./.
chr2	167262882	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.
chr2	167262939	rs33953730	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,12:32:30:0.400:2	./.	./.	./.	./.	0/1:4,150:32:154:0.974:2	./.	0/1:91,84:33:175:0.480:2	./.
chr2	167269629	rs33922582	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:31:16:0.563:2	./.	./.	./.	./.	0/1:8,108:32:116:0.931:2	./.	0/1:76,52:32:128:0.406:2	./.
chr2	167279922	rs6738031	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,11:29:23:0.478:2	0/1:10,6:32:16:0.375:2	0/1:0,2:31:2:1.00:2	0/1:0,28:31:28:1.00:2	0/1:14,11:31:25:0.440:2	./.	0/1:0,15:31:15:1.00:2	0/1:0,21:32:21:1.00:2	0/1:20,14:31:34:0.412:2	0/1:0,19:32:19:1.00:2	0/1:0,34:31:34:1.00:2
chr2	167301338	rs35213258	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,59:34:123:0.480:2	./.	./.
chr2	167313451	rs11888208	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,5:33:7:0.714:2	0/1:50,49:32:99:0.495:2	./.	./.	./.	0/1:40,70:32:110:0.636:2	./.	0/1:0,107:32:108:1.00:2	0/1:61,51:33:112:0.455:2
chr2	167334085	rs7565062	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,48:32:91:0.527:2	0/1:46,40:31:86:0.465:2	0/1:0,14:31:14:1.00:2	0/1:2,103:31:105:0.981:2	0/1:35,42:31:77:0.545:2	./.	0/1:0,49:32:49:1.00:2	0/1:46,37:31:83:0.446:2	0/1:73,58:32:131:0.443:2	0/1:0,124:31:124:1.00:2	0/1:0,154:32:154:1.00:2
chr2	167992482	rs114147582	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,18:33:49:0.367:2	./.	./.
chr2	168099726	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:32:169:0.024:2	./.	./.	./.	./.
chr2	168101386	rs76672761	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,29:30:58:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr2	168102774	rs72884678	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:30:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	168103016	rs117183838	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:34:186:0.022:2	./.	./.	./.	./.
chr2	168103950	rs116578731	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,53:32:87:0.609:2	./.	./.
chr2	168725741	rs141683896	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,52:32:108:0.481:2	./.	./.
chr2	168726659	rs12466817	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,29:34:29:1.00:2	0/1:7,9:32:16:0.563:2	0/1:12,16:33:28:0.571:2
chr2	169020276	rs201338418	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:137,5:32:142:0.035:2	./.	./.	0/1:156,4:31:160:0.025:2	0/1:90,4:32:94:0.043:2	0/1:112,4:33:116:0.034:2	./.	./.	./.	./.	./.
chr2	169659219	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:31:155:0.026:2	./.	./.	./.
chr2	169681151	rs3732031	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,72:32:193:0.373:2	./.	./.	./.	./.
chr2	169687981	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.
chr2	169721377	rs479661	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:31:56:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,7:32:7:1.00:2	0/1:1,54:31:55:0.982:2	0/1:0,23:31:23:1.00:2	0/1:28,21:31:49:0.429:2	0/1:31,11:32:42:0.262:2	0/1:38,30:30:68:0.441:2	0/1:0,38:32:38:1.00:2	0/1:31,14:31:45:0.311:2	0/1:2,59:31:61:0.967:2
chr2	169721381	rs3931	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:33:7:0.571:2	0/1:33,24:32:57:0.421:2	./.	0/1:30,20:31:50:0.400:2	0/1:35,13:33:48:0.271:2	./.	./.	./.	0/1:40,20:32:61:0.333:2
chr2	169764176	rs492594	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,59:32:59:1.00:2	./.	0/1:4,175:33:179:0.978:2	0/1:101,88:32:189:0.466:2	./.	0/1:117,79:33:196:0.403:2	./.	./.	./.
chr2	169764491	rs2232326	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:30:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	169764546	rs2232328	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,20:31:45:0.444:2	./.	./.	./.	./.	./.
chr2	169780200	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:31:158:0.025:2
chr2	169789016	rs497692	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,105:29:106:0.991:2	0/1:0,55:28:55:1.00:2	0/1:14,6:28:20:0.300:2	./.	0/1:52,53:30:105:0.505:2	./.	0/1:62,56:29:118:0.475:2	0/1:1,103:28:104:0.990:2	0/1:2,133:30:135:0.985:2	0/1:59,48:30:107:0.449:2	./.
chr2	169828367	rs200687717	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,11:15:134:0.082:2
chr2	169828424	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,5:28:141:0.035:2	./.
chr2	169830328	rs2287622	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,80:33:81:0.988:2	0/1:0,52:32:52:1.00:2	0/1:8,4:31:12:0.333:2	./.	0/1:37,33:31:70:0.471:2	0/1:0,96:32:96:1.00:2	0/1:35,46:32:81:0.568:2	0/1:0,107:32:107:1.00:2	0/1:0,107:33:107:1.00:2	./.	0/1:0,142:32:142:1.00:2
chr2	169869901	rs4148777	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,53:33:101:0.525:2	./.
chr2	169870882	rs4148776	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,15:34:27:0.556:2	./.
chr2	169948439	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,24:33:52:0.462:2	0/1:9,16:33:25:0.640:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	169952233	rs1059261	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,28:32:77:0.364:2	./.	./.	./.	./.	./.	./.	./.
chr2	169997051	rs990626	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,33:32:33:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,34:32:34:1.00:2	./.	0/1:21,15:31:36:0.417:2	0/1:11,18:32:29:0.621:2
chr2	170003432	rs4667591	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,105:32:106:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,20:32:20:1.00:2	0/1:73,69:32:142:0.486:2	0/1:72,45:32:117:0.385:2	0/1:0,147:32:147:1.00:2	0/1:3,145:32:148:0.980:2	0/1:4,159:32:163:0.975:2	0/1:98,73:33:171:0.427:2	0/1:68,54:32:122:0.443:2	0/1:2,129:32:131:0.985:2
chr2	170009343	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:173,4:32:177:0.023:2	./.	./.	./.	./.	./.	./.
chr2	170009391	rs148356370	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,81:33:167:0.485:2	./.	./.
chr2	170009453	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,21:32:83:0.253:2	./.	./.	./.	./.	./.	./.	./.
chr2	170010985	rs2075252	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,18:30:18:1.00:2	0/1:83,49:30:133:0.371:2	0/1:61,43:30:104:0.413:2	0/1:0,111:30:111:1.00:2	0/1:0,82:30:82:1.00:2	0/1:0,110:30:110:1.00:2	./.	0/1:59,39:31:98:0.398:2	0/1:0,134:30:134:1.00:2
chr2	170012877	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:33:122:0.033:2	./.	./.	./.	./.
chr2	170013904	rs79723119	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,25:32:52:0.481:2	./.	./.	./.	./.	./.
chr2	170025080	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:32:162:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	170025083	rs2229268	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,84:29:187:0.449:2
chr2	170032989	rs2229265	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,23:31:23:1.00:2	0/1:82,85:31:167:0.509:2	0/1:85,71:31:156:0.455:2	0/1:2,148:31:150:0.987:2	0/1:0,151:32:151:1.00:2	0/1:2,124:31:127:0.984:2	./.	0/1:64,55:32:119:0.462:2	0/1:59,47:31:106:0.443:2
chr2	170053505	rs2228171	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,39:32:39:1.00:2	0/1:0,30:32:30:1.00:2	./.	0/1:21,33:32:54:0.611:2	0/1:31,29:31:60:0.483:2	0/1:37,34:31:71:0.479:2	./.	./.	0/1:0,65:33:65:1.00:2	0/1:20,23:33:43:0.535:2	./.
chr2	170060603	rs17848169	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,81:33:179:0.453:2	./.
chr2	170062078	rs13397109	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,30:33:64:0.469:2	./.
chr2	170070172	rs4667596	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,19:32:74:0.257:2	./.
chr2	170070292	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,62:34:110:0.564:2	./.	./.
chr2	170070348	rs11886219	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	170072889	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:33:165:0.024:2
chr2	170088351	rs2302694	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,9:33:13:0.692:2	./.	./.	./.	./.	./.	./.	0/1:38,27:32:65:0.415:2	0/1:63,52:32:115:0.452:2
chr2	170092395	rs2229267	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	0/1:22,13:28:35:0.371:2	./.	./.	./.	./.	./.	0/1:0,64:29:64:1.00:2
chr2	170094785	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:32:97:0.041:2	./.	./.	./.	./.	./.
chr2	170099473	rs831042	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,43:30:134:0.321:2	./.	./.	./.	./.	0/1:55,41:30:96:0.427:2	0/1:62,39:28:101:0.386:2
chr2	170099557	rs181448146	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,39:33:76:0.513:2	./.	./.	./.	./.
chr2	170103336	rs831043	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,9:30:26:0.346:2	./.	0/1:95,58:28:153:0.379:2	./.	./.	./.	./.	0/1:80,65:30:145:0.448:2	0/1:88,76:28:164:0.463:2
chr2	170103351	rs2075249	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,116:32:118:0.983:2	0/1:0,62:32:62:1.00:2	0/1:15,6:31:21:0.286:2	./.	0/1:92,53:31:145:0.366:2	./.	./.	./.	0/1:78,69:32:147:0.469:2	./.	./.
chr2	170115588	rs2241190	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,12:30:18:0.667:2	./.	0/1:67,58:30:125:0.464:2	./.	./.	./.	./.	0/1:79,62:31:141:0.440:2	0/1:0,111:30:111:1.00:2
chr2	170115672	rs33954745	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:32:12:0.583:2	./.	./.	./.	./.	./.	./.	./.	0/1:68,53:32:121:0.438:2
chr2	170127562	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:29:87:0.046:2	./.	./.	./.	./.	./.
chr2	170129528	rs830994	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:31:73:1.00:2	0/1:0,48:32:48:1.00:2	0/1:2,6:27:8:0.750:2	0/1:1,123:31:124:0.992:2	0/1:64,21:29:85:0.247:2	0/1:50,44:30:94:0.468:2	0/1:63,33:31:96:0.344:2	0/1:1,109:31:110:0.991:2	0/1:0,103:32:103:1.00:2	0/1:55,38:31:93:0.409:2	0/1:0,89:31:89:1.00:2
chr2	170129547	rs34291900	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,45:31:78:0.577:2	./.
chr2	170147502	rs34693334	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,17:31:59:0.288:2	./.
chr2	170150671	rs2229266	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,188:32:191:0.984:2	0/1:126,71:32:197:0.360:2	./.	0/1:125,74:32:199:0.372:2	./.	./.	0/1:109,88:33:197:0.447:2	0/1:113,84:32:197:0.426:2
chr2	170163816	rs34104660	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:34:9:0.444:2	./.	./.	0/1:31,32:32:63:0.508:2	./.	./.	0/1:56,43:33:99:0.434:2	./.	./.
chr2	170175334	rs2229263	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,122:33:124:0.984:2	0/1:1,56:32:57:0.982:2	0/1:0,9:32:9:1.00:2	0/1:92,64:33:156:0.410:2	./.	0/1:82,68:32:151:0.453:2	0/1:2,110:33:112:0.982:2	0/1:63,67:32:130:0.515:2	./.	./.	./.
chr2	170218847	rs1559014	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,6:30:6:1.00:2	0/1:0,2:31:2:1.00:2	./.	0/1:0,5:33:5:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,2:35:2:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,6:34:6:1.00:2	0/1:0,8:28:8:1.00:2	0/1:0,4:30:4:1.00:2
chr2	170366296	rs28730867	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,4:31:12:0.333:2	./.	./.	./.	./.	0/1:4,5:32:9:0.556:2	./.
chr2	170366752	rs140948035	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,10:31:19:0.526:2	./.
chr2	170367099	rs28763868	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,31:32:77:0.403:2	./.	0/1:39,34:31:73:0.466:2	./.	./.	0/1:0,101:32:101:1.00:2	./.	./.
chr2	170367144	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,4:30:86:0.047:2	./.	./.	./.	./.	./.	./.
chr2	170371159	rs147650614	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:32:162:0.025:2	./.	./.	./.	./.
chr2	170403030	rs2253680	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,106:31:108:0.981:2	0/1:1,66:30:67:0.985:2	0/1:0,18:30:18:1.00:2	0/1:62,45:30:107:0.421:2	0/1:0,78:30:78:1.00:2	0/1:50,62:29:112:0.554:2	0/1:51,38:30:89:0.427:2	0/1:0,113:30:113:1.00:2	0/1:58,64:30:122:0.525:2	0/1:0,97:30:97:1.00:2	0/1:54,56:30:110:0.509:2
chr2	170411693	rs2683455	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,26:33:28:0.929:2	0/1:0,19:33:19:1.00:2	0/1:0,2:35:2:1.00:2	0/1:12,17:33:29:0.586:2	0/1:0,9:32:9:1.00:2	0/1:13,10:32:23:0.435:2	0/1:2,9:34:11:0.818:2	0/1:0,24:32:24:1.00:2	0/1:8,14:33:22:0.636:2	0/1:0,22:34:22:1.00:2	0/1:0,35:33:35:1.00:2
chr2	170417263	rs148415571	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,18:31:47:0.383:2	./.	./.	./.	./.	./.	./.	./.
chr2	170440962	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,19:32:46:0.413:2	./.
chr2	170463679	rs6759667	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,3:33:4:0.750:2	./.	./.	0/1:2,7:32:9:0.778:2	./.	./.	./.	0/1:3,6:32:9:0.667:2	./.	./.	0/1:3,6:32:9:0.667:2
chr2	170489675	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:31:150:0.027:2	./.	./.	./.	./.	./.
chr2	170489677	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:31:155:0.026:2	./.	./.	./.	./.	./.
chr2	170489735	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,5:28:134:0.037:2	./.	./.	./.	0/1:136,5:30:141:0.035:2	./.
chr2	170489752	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:31:101:0.040:2	./.
chr2	170493103	rs1050354	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,33:32:62:0.532:2	0/1:22,10:33:32:0.313:2	0/1:2,6:32:8:0.750:2	0/1:0,48:32:48:1.00:2	0/1:20,9:33:29:0.310:2	0/1:29,29:32:58:0.500:2	0/1:9,15:33:24:0.625:2	0/1:37,20:32:57:0.351:2	./.	./.	0/1:49,27:32:76:0.355:2
chr2	170493863	rs8207	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,16:30:49:0.327:2	./.	0/1:13,27:31:40:0.675:2	0/1:12,11:31:23:0.478:2	./.	./.	./.	./.
chr2	170502668	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.	./.	./.	./.	./.	./.
chr2	170506945	rs186722122	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,27:32:59:0.458:2	./.	./.	./.	./.
chr2	170550839	rs3820952	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,20:31:39:0.513:2	0/1:9,14:31:23:0.609:2	0/1:3,6:31:9:0.667:2	0/1:3,61:32:64:0.953:2	0/1:39,47:31:86:0.547:2	0/1:26,39:31:65:0.600:2	0/1:57,18:31:75:0.240:2	0/1:37,54:31:91:0.593:2	./.	./.	0/1:28,26:29:54:0.481:2
chr2	170592709	rs2288331	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:14,18:32:32:0.563:2	0/1:11,13:31:24:0.542:2	./.	./.	0/1:13,18:30:31:0.581:2	./.	./.	0/1:15,15:31:30:0.500:2	./.	./.	0/1:20,18:33:38:0.474:2
chr2	170605981	rs4667607	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,101:31:101:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,116:30:116:1.00:2	0/1:0,117:30:117:1.00:2	0/1:1,115:30:116:0.991:2	0/1:0,95:30:95:1.00:2	0/1:0,131:30:131:1.00:2	0/1:0,109:31:109:1.00:2	0/1:0,97:30:97:1.00:2	0/1:0,159:31:159:1.00:2
chr2	170632969	rs11422612	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,74:31:161:0.460:2	0/1:40,35:31:75:0.467:2	0/1:7,12:29:19:0.632:2	0/1:1,107:30:108:0.991:2	0/1:46,29:30:75:0.387:2	0/1:2,107:30:109:0.982:2	0/1:1,85:31:86:0.988:2	0/1:69,49:31:118:0.415:2	0/1:70,36:31:106:0.340:2	0/1:0,104:31:104:1.00:2	0/1:58,49:29:107:0.458:2
chr2	170663305	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:30:83:0.049:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	170663339	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:32:85:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	170663353	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:32:81:0.049:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	170728872	rs56240917	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,8:32:23:0.348:2	./.	./.	0/1:21,9:32:30:0.300:2	./.	./.	0/1:36,10:32:46:0.217:2
chr2	170762566	rs10194785	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,27:32:51:0.529:2	0/1:21,23:31:44:0.523:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	170802862	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,4:30:62:0.065:2	./.	./.	./.	./.	./.	./.	./.
chr2	170865442	rs80239364	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,17:29:37:0.459:2	./.	./.	0/1:52,16:29:68:0.235:2	./.	./.	0/1:42,33:30:75:0.440:2
chr2	170873361	rs10497356	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,59:33:128:0.461:2	./.	./.
chr2	170885930	rs77587723	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,3:31:29:0.103:2	./.	./.	./.	./.	./.
chr2	170917648	rs10203212	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:46,34:33:80:0.425:2	0/1:22,14:33:36:0.389:2	0/1:7,8:33:15:0.533:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	170917657	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,5:33:84:0.060:2	./.	./.	./.	./.	./.
chr2	171055772	rs35745676	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,11:30:31:0.355:2	./.
chr2	171056696	rs56037828	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,57:34:116:0.496:2	./.	./.
chr2	171070912	rs13385825	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:49,49:31:98:0.500:2	0/1:25,20:31:45:0.444:2	./.	0/1:55,51:31:106:0.481:2	./.	0/1:46,45:30:91:0.495:2	0/1:89,48:31:138:0.350:2	./.	0/1:74,55:31:129:0.426:2	0/1:0,79:31:79:1.00:2	./.
chr2	171073887	rs2161916	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,134:32:134:1.00:2	0/1:1,71:31:72:0.986:2	0/1:14,7:31:21:0.333:2	0/1:86,71:31:157:0.452:2	./.	0/1:0,156:31:156:1.00:2	0/1:77,62:32:139:0.446:2	./.	0/1:90,82:32:172:0.477:2	0/1:0,121:32:121:1.00:2	./.
chr2	171225841	rs4668246	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,110:30:112:0.982:2	0/1:1,58:28:59:0.983:2	./.	./.	./.	0/1:1,92:30:93:0.989:2	0/1:38,33:30:71:0.465:2	./.	0/1:0,113:31:113:1.00:2	./.	./.
chr2	171240249	rs11675394	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,56:31:98:0.571:2	./.	./.	0/1:32,19:32:51:0.373:2	./.	0/1:1,86:32:87:0.989:2	0/1:25,35:32:60:0.583:2	./.
chr2	171242761	rs17497636	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,76:31:167:0.458:2
chr2	171260787	rs6736609	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:31:10:1.00:2	0/1:0,84:30:84:1.00:2	0/1:0,54:29:54:1.00:2	0/1:0,92:30:92:1.00:2	0/1:0,54:30:54:1.00:2	0/1:1,64:30:65:0.985:2	0/1:0,58:29:58:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,88:30:88:1.00:2
chr2	171260797	rs33962844	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,36:32:85:0.424:2	./.	./.	0/1:28,21:32:49:0.429:2	0/1:43,29:32:72:0.403:2	0/1:1,58:32:60:0.983:2	0/1:41,24:33:65:0.369:2	./.
chr2	171260820	rs6751520	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,13:33:13:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,46:33:46:1.00:2	0/1:1,71:32:72:0.986:2	0/1:0,66:33:67:1.00:2	0/1:0,51:33:51:1.00:2	0/1:1,75:33:76:0.987:2
chr2	171355198	rs6761297	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,54:33:54:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,59:32:59:1.00:2
chr2	171356274	rs10185178	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:33:44:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,53:32:53:1.00:2
chr2	171570151	rs72885464	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:109,79:32:188:0.420:2	0/1:46,47:32:93:0.505:2	./.	./.	./.	./.	0/1:113,74:32:187:0.396:2	0/1:5,181:32:186:0.973:2	0/1:106,85:32:191:0.445:2	0/1:81,98:32:179:0.547:2	./.
chr2	171572799	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.
chr2	171573509	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	171649402	rs3764916	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,54:31:54:1.00:2	0/1:11,9:31:20:0.450:2	./.	0/1:21,27:32:48:0.563:2	./.	0/1:35,14:32:49:0.286:2
chr2	171678625	rs769404	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:30:29:1.00:2	0/1:0,5:28:5:1.00:2	0/1:1,2:32:3:0.667:2	0/1:0,51:30:51:1.00:2	0/1:0,45:30:45:1.00:2	0/1:21,17:29:38:0.447:2	./.	./.	0/1:27,21:31:48:0.438:2	./.	0/1:13,17:29:30:0.567:2
chr2	171785882	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.
chr2	171818189	rs77658592	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:30:5:0.800:2	./.	./.	0/1:26,18:31:44:0.409:2	./.	./.	./.	./.	./.
chr2	171822466	rs4668356	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:31:70:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,11:29:11:1.00:2	0/1:1,110:31:112:0.991:2	0/1:0,138:30:138:1.00:2	0/1:0,98:30:99:1.00:2	0/1:67,70:31:137:0.511:2	0/1:1,122:31:123:0.992:2	0/1:2,96:31:98:0.980:2	0/1:1,73:31:74:0.986:2	0/1:0,56:30:56:1.00:2
chr2	171862688	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:32:167:0.024:2	./.	./.	./.	./.
chr2	171862699	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,6:33:197:0.030:2	./.	./.	./.	./.
chr2	171862753	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,6:32:155:0.039:2	./.	./.	./.	./.
chr2	171910313	rs11553951	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,5:33:9:0.556:2	0/1:38,26:32:64:0.406:2	0/1:20,13:32:33:0.394:2	0/1:36,31:32:67:0.463:2	./.	./.	0/1:39,38:33:77:0.494:2	./.	./.
chr2	171913025	rs56111030	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:33:122:0.033:2	./.	./.	./.
chr2	171916495	rs3821087	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,11:31:36:0.306:2	./.	./.	./.
chr2	172180771	rs10205459	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,140:30:140:1.00:2	0/1:0,80:29:80:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,134:30:134:1.00:2	0/1:0,108:30:108:1.00:2	0/1:0,111:29:111:1.00:2	0/1:0,96:30:96:1.00:2	0/1:0,146:30:146:1.00:2	0/1:0,145:31:145:1.00:2	0/1:2,115:30:117:0.983:2	0/1:0,162:29:163:1.00:2
chr2	172182597	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:110,8:30:118:0.068:2	./.	./.	0/1:190,8:31:198:0.040:2	./.	./.	./.
chr2	172182638	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,8:29:108:0.074:2	./.	./.	0/1:157,5:32:162:0.031:2	./.	./.	./.
chr2	172188368	rs13023973	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:33,21:32:54:0.389:2	0/1:18,11:32:29:0.379:2	./.	0/1:35,23:32:58:0.397:2	./.	0/1:0,34:31:34:1.00:2	0/1:22,27:32:49:0.551:2	0/1:30,20:32:50:0.400:2	./.	./.	0/1:38,34:32:73:0.472:2
chr2	172216969	rs3731986	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,82:33:82:1.00:2	0/1:0,71:32:71:1.00:2	./.	0/1:0,115:33:115:1.00:2	./.	0/1:3,82:32:85:0.965:2	0/1:46,35:32:81:0.432:2	0/1:40,56:33:96:0.583:2	./.	./.	0/1:0,122:33:122:1.00:2
chr2	172291616	rs6751956	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,15:32:20:0.750:2	./.	0/1:42,29:32:71:0.408:2	0/1:44,59:32:103:0.573:2	./.	./.	./.	./.	./.
chr2	172329458	rs36112363	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:31:13:0.500:2	./.	0/1:37,38:30:75:0.507:2	0/1:47,35:30:82:0.427:2	./.	./.	./.	./.	./.
chr2	172330393	rs3731983	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,8:32:17:0.471:2	./.	0/1:31,19:32:50:0.380:2	0/1:85,45:32:130:0.346:2	./.	./.	./.	./.	./.
chr2	172378818	rs868106	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,36:31:36:1.00:2	0/1:1,20:31:21:0.952:2	0/1:0,7:33:7:1.00:2	./.	0/1:1,36:31:37:0.973:2	0/1:11,18:31:29:0.621:2	0/1:27,15:30:42:0.357:2	0/1:36,24:32:60:0.400:2	0/1:0,49:33:49:1.00:2	./.	0/1:0,26:31:26:1.00:2
chr2	172379781	rs960749	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,64:32:64:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,7:32:7:1.00:2	./.	0/1:0,38:32:38:1.00:2	0/1:49,24:31:73:0.329:2	0/1:27,18:32:45:0.400:2	0/1:35,44:32:79:0.557:2	0/1:0,69:33:69:1.00:2	./.	0/1:0,71:33:71:1.00:2
chr2	172411111	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2	./.
chr2	172411273	rs10455	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,88:32:90:0.978:2	0/1:1,62:32:63:0.984:2	0/1:0,9:30:9:1.00:2	0/1:1,107:31:108:0.991:2	0/1:59,26:31:85:0.306:2	0/1:66,55:31:121:0.455:2	0/1:0,90:32:90:1.00:2	0/1:0,119:31:119:1.00:2	./.	0/1:56,48:32:106:0.462:2	0/1:1,101:32:102:0.990:2
chr2	172584404	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:188,5:29:193:0.026:2	./.	./.	./.	./.	./.	./.
chr2	172585298	rs62184168	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:175,10:30:185:0.054:2	0/1:142,9:28:151:0.060:2	./.	./.	0/1:175,17:28:192:0.089:2	0/1:180,11:27:192:0.058:2	./.	./.	0/1:176,7:29:183:0.038:2	./.	0/1:171,10:30:181:0.055:2
chr2	172585301	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:27:198:0.025:2	./.	./.	./.	./.	./.
chr2	172586317	.	T	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:88,12:28:100:0.120:2	./.	./.	0/1:134,5:30:139:0.036:2	0/1:114,9:30:123:0.073:2	0/1:139,7:30:146:0.048:2	0/1:125,10:29:136:0.074:2	./.	./.	./.	0/1:121,12:31:133:0.090:2
chr2	172602358	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,5:32:199:0.025:2	./.	./.	./.
chr2	172604328	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,5:33:192:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,5:34:192:0.026:2
chr2	172604356	rs201120526	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:194,5:31:199:0.025:2	./.	0/1:190,4:33:194:0.021:2	./.	./.	./.	./.	./.
chr2	172690557	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:33:131:0.031:2
chr2	172725301	rs1878583	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,32:32:33:0.970:2	0/1:0,19:31:19:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,55:32:55:1.00:2	0/1:2,45:31:47:0.957:2	0/1:30,25:30:55:0.455:2	0/1:20,39:32:59:0.661:2	0/1:0,63:32:63:1.00:2	0/1:30,28:33:58:0.483:2	0/1:0,46:32:46:1.00:2	0/1:0,63:33:63:1.00:2
chr2	172864845	rs6730085	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	0/1:2,3:30:5:0.600:2	./.
chr2	172966250	rs2228184	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:30:4:0.750:2	0/1:17,8:31:25:0.320:2	./.	./.	0/1:8,8:32:16:0.500:2	./.	0/1:7,21:31:28:0.750:2	0/1:7,8:32:15:0.533:2	./.
chr2	173339808	rs11895564	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,28:31:73:0.384:2	./.	0/1:35,27:31:62:0.435:2	./.	0/1:34,23:31:57:0.404:2	0/1:38,26:31:64:0.406:2	0/1:20,13:31:33:0.394:2	0/1:29,26:32:55:0.473:2
chr2	173352103	rs2293649	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,61:29:107:0.570:2	./.	./.	0/1:68,42:32:110:0.382:2	./.	0/1:64,57:32:121:0.471:2
chr2	173352157	rs2293648	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:44,34:33:78:0.436:2	0/1:33,29:32:62:0.468:2	./.	0/1:49,51:32:100:0.510:2	./.	./.	0/1:42,38:32:80:0.475:2	./.	./.	./.	./.
chr2	173352458	rs61748247	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,45:32:116:0.388:2	./.	./.	./.	./.
chr2	173451074	rs36014095	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,72:29:136:0.529:2	./.	./.	./.	./.	./.	./.	./.
chr2	173460640	rs12693005	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,6:28:10:0.600:2	0/1:66,52:29:118:0.441:2	./.	./.	./.	0/1:67,64:30:131:0.489:2	./.	0/1:46,58:28:104:0.558:2	./.
chr2	173686663	rs2258180	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,41:31:74:0.554:2	0/1:28,21:32:49:0.429:2	./.	0/1:47,62:31:109:0.569:2	0/1:0,64:30:64:1.00:2	./.	0/1:38,33:30:71:0.465:2	./.	./.	0/1:37,30:31:67:0.448:2	0/1:61,59:31:120:0.492:2
chr2	173848287	rs17301507	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,34:30:87:0.391:2
chr2	173883523	rs61741759	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,26:33:62:0.419:2	./.	./.	./.	./.	./.	./.	./.
chr2	174055646	rs35853276	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,22:33:38:0.579:2	0/1:5,10:31:15:0.667:2	./.	0/1:0,22:32:22:1.00:2	0/1:11,12:31:23:0.522:2	./.	0/1:10,7:33:17:0.412:2	0/1:15,12:31:27:0.444:2	./.	./.	./.
chr2	174068513	rs11899707	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:33:57:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,80:33:80:1.00:2	0/1:1,44:33:45:0.978:2	0/1:0,67:33:67:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,83:34:83:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,78:33:78:1.00:2
chr2	174128513	rs3769148	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:32:10:1.00:2	0/1:59,44:31:103:0.427:2	0/1:0,71:32:71:1.00:2	./.	0/1:54,52:32:106:0.491:2	0/1:5,119:32:124:0.960:2	./.	./.	0/1:72,45:32:117:0.385:2
chr2	174131392	rs35608243	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,37:30:38:0.974:2	0/1:0,19:31:19:1.00:2	./.	0/1:21,41:31:62:0.661:2	./.	0/1:9,19:31:28:0.679:2	./.	./.	./.	./.	0/1:32,21:31:53:0.396:2
chr2	174227996	rs187490983	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,53:32:113:0.469:2	./.	./.	./.	./.
chr2	174777865	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:34:180:0.022:2	./.	./.
chr2	174819731	rs199556042	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,11:14:110:0.100:2	./.	./.	./.	0/1:70,11:14:81:0.136:2	0/1:108,15:17:124:0.122:2
chr2	174820750	rs1047640	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:60,49:32:109:0.450:2	0/1:35,23:33:58:0.397:2	./.	0/1:60,67:33:127:0.528:2	./.	./.	./.	./.	0/1:69,64:32:133:0.481:2	./.	./.
chr2	174943806	rs376640155	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,33:33:61:0.541:2	./.	./.	./.	./.
chr2	174946760	rs11558990	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,18:33:51:0.353:2	0/1:5,11:32:16:0.688:2	./.	0/1:28,28:32:56:0.500:2	0/1:15,10:32:25:0.400:2	0/1:31,23:32:54:0.426:2	./.	0/1:40,24:32:64:0.375:2	./.	0/1:29,18:33:47:0.383:2	0/1:0,55:31:55:1.00:2
chr2	175087855	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:30:131:0.031:2	./.
chr2	175087864	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,8:32:120:0.067:2	./.
chr2	175094056	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:175,5:32:180:0.028:2	./.	./.	./.	./.	./.	./.
chr2	175094122	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:31:159:0.025:2	./.	./.	./.	./.
chr2	175111504	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:132,6:32:138:0.043:2	./.	0/1:114,5:32:119:0.042:2	./.	./.	./.	./.	./.
chr2	175111536	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:33:90:0.044:2	./.	./.	./.
chr2	175199869	rs56000618	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,64:30:147:0.435:2	0/1:6,114:32:120:0.950:2	./.	0/1:0,136:32:136:1.00:2	./.	./.
chr2	175200903	rs35548534	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,48:32:102:0.471:2	0/1:41,25:32:66:0.379:2	./.	0/1:0,66:33:66:1.00:2	./.	./.
chr2	175201299	rs62174227	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:31:11:0.727:2	0/1:2,3:30:5:0.600:2	./.	./.	./.	./.	./.	./.
chr2	175260355	rs719161	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,66:30:150:0.440:2	./.	./.	./.	./.	./.	./.	./.
chr2	175263063	rs10497410	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,21:32:35:0.600:2	0/1:8,10:32:18:0.556:2	0/1:17,8:33:25:0.320:2	0/1:0,39:32:39:1.00:2	./.	./.
chr2	175289314	rs17255817	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:49,39:30:88:0.443:2	0/1:36,18:29:54:0.333:2	./.	./.	0/1:40,39:29:79:0.494:2	./.	0/1:42,39:30:81:0.481:2	./.	./.	./.	./.
chr2	175292504	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,4:32:188:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr2	175300997	rs6757461	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:1,31:32:32:0.969:2	0/1:5,4:32:9:0.444:2	0/1:55,51:32:106:0.481:2	0/1:0,35:31:35:1.00:2	0/1:45,25:31:70:0.357:2	0/1:55,29:31:84:0.345:2	0/1:50,26:32:76:0.342:2	./.	0/1:50,44:32:94:0.468:2	0/1:1,76:32:77:0.987:2
chr2	175436576	rs112447307	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,18:28:35:0.514:2
chr2	175436940	rs4972450	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,41:32:81:0.506:2	0/1:21,26:32:47:0.553:2	0/1:0,14:31:14:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,92:31:92:1.00:2	0/1:0,87:33:87:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,63:32:63:1.00:2
chr2	175614716	rs2229957	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,106:29:193:0.549:2	./.	./.	./.	./.	./.	./.	./.
chr2	175619102	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:32:111:0.036:2	./.
chr2	175957930	rs61740493	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:32:116:0.034:2	./.	./.	./.
chr2	176032376	rs79402775	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,22:31:50:0.440:2	./.	./.
chr2	176032383	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,4:31:104:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr2	176043097	rs8106	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,72:30:187:0.385:2
chr2	176829117	rs34897061	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,23:32:83:0.277:2	./.	./.	./.
chr2	176857067	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:32:108:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	176948153	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:31:11:0.727:2	./.	./.	./.	./.	./.	./.	./.
chr2	176957822	rs2518053	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:18:3:1.00:2	./.	./.	./.	./.
chr2	176958087	rs187698441	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,58:30:111:0.523:2	./.	./.	./.	./.	./.	./.
chr2	176959245	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:123,4:31:127:0.031:2	./.	./.	./.	./.	./.	./.
chr2	176964759	rs201839891	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	176964904	rs847151	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,28:31:28:1.00:2	0/1:0,14:31:14:1.00:2	./.	./.	0/1:23,9:30:32:0.281:2	0/1:13,9:30:22:0.409:2	0/1:9,8:31:17:0.471:2	0/1:1,23:31:24:0.958:2	0/1:15,12:32:27:0.444:2	0/1:12,10:30:22:0.455:2	./.
chr2	176965086	rs35817516	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:28,35:29:63:0.556:2	0/1:27,23:30:50:0.460:2	./.	./.	0/1:73,74:29:147:0.503:2	./.	./.	./.	0/1:64,53:29:117:0.453:2	./.	./.
chr2	176973687	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:27:60:0.067:2
chr2	176973807	rs138394594	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,18:30:43:0.419:2	./.	./.	./.
chr2	176981933	rs149038150	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,56:33:113:0.496:2	./.	./.	./.	./.	./.
chr2	176983923	rs33913965	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,36:31:75:0.480:2	./.
chr2	176988015	rs711821	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,38:31:92:0.413:2	./.	./.	./.	./.	./.	./.	./.
chr2	177016728	rs34727427	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:34:3:0.667:2	./.	0/1:12,11:31:24:0.478:2	./.	0/1:16,6:32:22:0.273:2	./.	0/1:19,15:33:34:0.441:2	./.	./.
chr2	177033995	rs141168805	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,54:32:105:0.519:2	./.	./.	./.	./.	./.
chr2	177034121	rs34729309	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,39:31:62:0.629:2	./.	0/1:23,27:32:50:0.540:2	./.	0/1:20,28:31:48:0.583:2	./.	./.
chr2	177036754	rs1051929	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	./.	0/1:1,3:33:4:0.750:2	0/1:5,5:31:10:0.500:2	0/1:0,4:28:4:1.00:2	0/1:1,4:31:5:0.800:2	0/1:0,3:30:3:1.00:2	./.	./.
chr2	177054769	rs6710142	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,37:29:62:0.597:2	./.	./.	./.	0/1:28,49:30:79:0.636:2	./.	./.
chr2	177135147	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,3:31:22:0.136:2	./.
chr2	178084026	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,5:33:24:0.208:2	./.	./.
chr2	178096690	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.	./.
chr2	178346854	rs115580413	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,38:32:93:0.409:2	./.	./.	./.	./.	./.	./.	./.
chr2	178415550	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:33:136:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	178415566	rs185099655	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:32:157:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	178416283	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:165,4:33:170:0.024:2	./.	./.	./.	./.	./.	./.	0/1:177,7:32:184:0.038:2
chr2	178416902	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:33:149:0.027:2	./.	./.	./.	./.
chr2	178417142	rs11694988	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,65:32:66:0.985:2	0/1:0,24:31:24:1.00:2	0/1:0,6:31:6:1.00:2	0/1:1,53:30:54:0.981:2	0/1:31,26:31:57:0.456:2	0/1:0,53:30:53:1.00:2	0/1:0,53:31:53:1.00:2	0/1:38,29:30:67:0.433:2	0/1:44,33:32:77:0.429:2	0/1:19,21:32:40:0.525:2	0/1:0,74:30:74:1.00:2
chr2	178417225	rs11695035	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,19:30:20:0.950:2	0/1:0,14:30:14:1.00:2	./.	0/1:0,24:30:24:1.00:2	0/1:7,12:30:19:0.632:2	0/1:0,22:30:22:1.00:2	0/1:2,15:30:17:0.882:2	0/1:18,10:29:28:0.357:2	0/1:13,6:32:19:0.316:2	0/1:11,3:32:14:0.214:2	0/1:0,29:30:29:1.00:2
chr2	178417641	rs116634324	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,44:32:122:0.361:2	./.	./.	./.	./.	./.	./.	./.
chr2	178481687	rs199946796	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:124,5:32:130:0.039:2	./.	./.	./.	./.	./.	./.
chr2	178481818	rs10497497	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,183:32:183:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,29:31:29:1.00:2	0/1:1,190:32:191:0.995:2	0/1:0,160:31:160:1.00:2	0/1:2,185:31:187:0.989:2	0/1:0,183:32:184:1.00:2	0/1:98,102:31:200:0.510:2	0/1:80,102:32:182:0.560:2	0/1:81,88:32:169:0.521:2	0/1:0,180:32:180:1.00:2
chr2	178482094	rs28630685	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,39:31:43:0.907:2	0/1:1,26:31:27:0.963:2	0/1:0,5:30:5:1.00:2	0/1:0,20:30:21:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,14:30:15:1.00:2	0/1:133,10:30:143:0.070:2	0/1:115,16:32:131:0.122:2	0/1:117,11:31:128:0.086:2	0/1:1,57:31:58:0.983:2
chr2	178482269	rs61743008	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,57:30:112:0.509:2	./.	./.	./.	./.	./.	./.
chr2	178482560	rs61164370	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:122,71:30:193:0.368:2	0/1:112,83:30:195:0.426:2	./.	./.	./.	./.	./.	./.
chr2	178482594	rs61742858	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,56:31:58:0.966:2	./.	./.	0/1:105,90:31:195:0.462:2	0/1:62,134:32:196:0.684:2	./.	./.	./.	./.
chr2	178482596	rs3813257	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,58:32:199:0.291:2	./.	./.	./.	0/1:113,82:32:195:0.421:2
chr2	178482698	rs3813256	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:113,74:32:187:0.396:2	./.	./.	./.	./.	./.	./.	./.
chr2	178482771	rs59353759	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,77:30:145:0.531:2	./.	./.	./.	./.	./.	./.	./.
chr2	178483470	rs111468773	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,35:32:83:0.422:2	./.	./.	./.	./.	./.	./.
chr2	178483576	rs80201392	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,30:31:80:0.375:2	./.	./.	./.
chr2	178483577	rs75024536	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,30:31:80:0.375:2	./.	./.	./.
chr2	178483595	rs78801448	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,51:32:87:0.586:2	./.	./.	./.	./.	./.	./.
chr2	178483621	rs73977671	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,39:32:75:0.520:2	./.	./.	./.	0/1:60,40:29:100:0.400:2
chr2	178528641	rs61306957	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,26:32:73:0.356:2	./.	./.	./.	./.	./.	./.	./.
chr2	178540371	rs113351119	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,47:32:112:0.420:2
chr2	178540394	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:33:111:0.036:2
chr2	178682603	rs6720891	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,36:31:37:0.973:2	0/1:0,25:31:25:1.00:2	./.	0/1:35,21:31:56:0.375:2	./.	./.	0/1:29,10:32:39:0.256:2	./.	0/1:0,46:31:46:1.00:2	./.	0/1:39,16:31:55:0.291:2
chr2	178682655	rs3821010	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,48:33:49:0.980:2	0/1:0,29:32:29:1.00:2	0/1:7,4:34:11:0.364:2	0/1:34,36:33:70:0.514:2	./.	./.	0/1:36,16:31:52:0.308:2	./.	0/1:0,73:33:73:1.00:2	./.	0/1:53,25:32:78:0.321:2
chr2	178762824	rs71423514	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:31:5:0.800:2	./.	./.	./.	./.	./.	./.	0/1:28,19:33:47:0.404:2	./.
chr2	178769917	rs13012088	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,19:32:54:0.352:2	./.
chr2	178936373	rs1435573	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,61:32:62:0.984:2	0/1:0,40:31:40:1.00:2	0/1:11,7:34:18:0.389:2	0/1:44,26:32:71:0.371:2	0/1:0,67:32:67:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,70:33:70:1.00:2	0/1:37,32:33:69:0.464:2	0/1:0,76:32:76:1.00:2
chr2	178936475	rs78496158	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,12:29:25:0.500:2	./.	./.	./.	./.	./.	./.
chr2	178936614	rs6433711	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:33:64:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,8:33:8:1.00:2	0/1:32,53:32:85:0.624:2	0/1:0,69:32:69:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,75:33:75:1.00:2	0/1:0,74:33:74:1.00:2	0/1:0,63:33:63:1.00:2	0/1:0,82:33:82:1.00:2
chr2	178969039	rs75672043	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:36,23:30:59:0.390:2	0/1:20,17:29:37:0.459:2	./.	./.	0/1:21,13:29:34:0.382:2	./.	0/1:19,10:29:29:0.345:2	./.	./.	./.	./.
chr2	178969122	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,3:37:101:0.030:2	./.	./.	./.
chr2	178988611	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:32:175:0.023:2	./.	./.	./.
chr2	179188959	rs35032920	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,33:32:75:0.440:2	./.	./.
chr2	179201048	rs16866263	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,32:33:65:0.492:2	./.	./.
chr2	179203797	rs1434087	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:32:22:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,2:32:2:1.00:2	0/1:13,11:32:24:0.458:2	0/1:0,23:32:23:1.00:2	0/1:0,27:32:27:1.00:2	./.	0/1:0,17:33:17:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,31:32:31:1.00:2
chr2	179306397	rs61746229	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:30:122:0.033:2	./.
chr2	179318974	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:30:73:0.055:2	./.	./.	./.	./.
chr2	179325735	rs17304212	C	T,G	.	PASS	AC=3,1;AF=0.250,0.083;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8	GT:BQ:DP:FA:SS	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0/2:33:13:0.615:2	./.	./.	./.	0/1:31:42:0.976:2	./.	0/1:33:121:0.504:2	0/1:32:75:0.440:2	./.
chr2	179350414	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:31:160:0.025:2	./.	./.	./.
chr2	179355459	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:156,5:29:161:0.031:2	./.	./.	./.	./.	./.	0/1:142,4:31:146:0.027:2	./.	./.	./.	./.
chr2	179358665	rs2303536	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,74:30:175:0.423:2	0/1:83,48:30:131:0.366:2	./.	./.	./.	./.	0/1:74,62:30:136:0.456:2	0/1:101,75:31:176:0.426:2
chr2	179367086	rs967507	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:32:13:0.385:2	./.	./.	./.	./.	./.	0/1:2,5:31:7:0.714:2	0/1:11,11:33:22:0.500:2
chr2	179368518	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:138,5:31:143:0.035:2	./.	./.	0/1:180,6:30:186:0.032:2	0/1:97,4:30:101:0.040:2	./.	0/1:130,5:30:135:0.037:2	./.	0/1:172,5:30:177:0.028:2	0/1:153,5:30:158:0.032:2	0/1:186,9:30:195:0.046:2
chr2	179392298	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,4:30:133:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr2	179395067	rs56207956	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,25:33:25:1.00:2	./.	0/1:23,28:34:51:0.549:2	0/1:19,18:32:37:0.486:2	./.
chr2	179395542	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:33:140:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	179395554	rs66961115	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,52:31:173:0.301:2
chr2	179395555	rs67254537	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,52:31:173:0.301:2
chr2	179395573	rs56324595	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,67:31:183:0.366:2
chr2	179395958	rs3813250	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,84:29:159:0.528:2	./.	./.	0/1:123,67:30:190:0.353:2	./.	0/1:115,83:30:198:0.419:2	0/1:104,84:30:188:0.447:2
chr2	179396162	rs56308529	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,30:29:48:0.625:2	./.
chr2	179396354	rs3829748	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,42:30:99:0.424:2	./.	./.	0/1:74,42:31:116:0.362:2	./.	0/1:45,38:31:83:0.458:2	./.
chr2	179397561	rs3829747	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:87,91:31:178:0.511:2	./.	./.	0/1:94,100:31:194:0.515:2	./.	0/1:79,89:31:168:0.530:2	./.
chr2	179397686	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,70:32:148:0.473:2	0/1:52,28:31:80:0.350:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	179397979	rs72629785	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:34:167:0.024:2	./.	./.
chr2	179398823	rs2857265	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,54:31:143:0.378:2	./.	./.	0/1:105,73:31:178:0.410:2	./.	0/1:69,61:32:131:0.469:2	./.
chr2	179400263	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:32:60:0.067:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	179401742	rs55742743	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,35:32:61:0.574:2	./.
chr2	179403310	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:33:80:0.050:2
chr2	179404402	rs149001703	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,17:32:37:0.459:2	./.	./.	./.
chr2	179406191	rs3731749	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,85:32:185:0.459:2	./.	./.	0/1:108,81:32:189:0.429:2	./.	0/1:112,68:32:181:0.378:2	./.
chr2	179410282	rs62621206	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,90:29:200:0.450:2	./.	./.	./.	./.	./.
chr2	179410693	rs72648259	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,76:32:156:0.487:2	./.	./.	./.	./.	./.
chr2	179412452	rs67665715	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,79:32:194:0.407:2
chr2	179413110	rs3731748	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,57:31:127:0.449:2	./.	./.	0/1:59,82:32:141:0.582:2	./.	0/1:43,53:32:96:0.552:2	./.
chr2	179414318	rs747122	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,36:32:70:0.514:2
chr2	179416556	rs11897366	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,43:30:99:0.434:2
chr2	179416659	rs11887722	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,35:32:86:0.407:2
chr2	179418346	rs72648237	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,22:29:45:0.489:2	./.	./.	./.	./.	./.
chr2	179419223	rs201241167	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:24,6:20:30:0.200:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,10:19:47:0.213:2	0/1:52,7:20:59:0.119:2
chr2	179419226	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,10:15:63:0.159:2
chr2	179421694	rs9808377	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,64:32:130:0.492:2	./.	0/1:152,4:32:156:0.026:2	0/1:82,75:32:157:0.478:2	./.	0/1:46,78:32:124:0.629:2	0/1:81,50:31:131:0.382:2
chr2	179421791	rs183013408	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,79:32:148:0.534:2	./.	./.	./.	./.	./.	./.
chr2	179424048	rs55972010	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:60,36:32:96:0.375:2	0/1:35,26:32:61:0.426:2	./.	./.	0/1:28,32:32:60:0.533:2	./.	./.	./.	./.	./.	./.
chr2	179426406	rs73036373	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,68:29:137:0.496:2
chr2	179426477	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:34:192:0.021:2
chr2	179426989	rs148067743	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,43:30:105:0.410:2	./.	./.	./.	./.	./.	./.	./.
chr2	179427186	rs2366751	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,43:30:86:0.500:2	./.	./.	0/1:92,50:30:142:0.352:2	./.	0/1:72,30:30:102:0.294:2	0/1:83,63:29:146:0.432:2
chr2	179427536	rs3829746	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,36:29:62:0.581:2	./.	./.	0/1:29,36:28:65:0.554:2	./.	0/1:25,36:29:61:0.590:2	0/1:57,64:29:122:0.529:2
chr2	179427544	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,27:31:64:0.422:2	./.	./.	./.
chr2	179428061	rs11896637	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,73:32:145:0.503:2
chr2	179429188	rs368443217	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:31:11:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	179430596	rs200181804	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,32:32:72:0.444:2	./.	./.	./.	./.	./.
chr2	179430997	rs3731746	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,67:31:105:0.638:2	./.	./.	0/1:68,56:31:124:0.452:2	./.	0/1:58,49:32:107:0.458:2	./.
chr2	179432185	rs12463674	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:32,23:33:55:0.418:2	0/1:12,12:33:24:0.500:2	0/1:1,5:31:6:0.833:2	./.	./.	./.	./.	0/1:27,27:32:54:0.500:2	./.	./.	0/1:38,35:32:73:0.479:2
chr2	179435337	rs6732060	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,69:29:141:0.489:2
chr2	179436020	rs744426	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,60:32:143:0.420:2	./.	./.	0/1:93,77:31:170:0.453:2	./.	0/1:90,42:32:132:0.318:2	./.
chr2	179436669	rs201797603	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,14:12:94:0.151:2	./.	0/1:109,19:13:128:0.148:2	./.	./.	0/1:78,14:15:93:0.152:2
chr2	179439998	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:122,4:32:126:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr2	179440029	rs12464787	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,47:31:99:0.480:2	0/1:21,33:31:54:0.611:2	0/1:5,6:31:11:0.545:2	0/1:133,5:31:138:0.036:2	./.	./.	./.	0/1:98,76:31:174:0.437:2	./.	./.	0/1:42,69:31:111:0.622:2
chr2	179441295	rs72646885	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,63:29:121:0.521:2	./.	./.	./.	./.	./.
chr2	179441917	rs72646881	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,59:32:122:0.484:2
chr2	179443404	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:33:158:0.025:2	./.	./.
chr2	179443540	rs10497517	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,26:32:62:0.419:2
chr2	179443546	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,36:32:63:0.571:2
chr2	179444768	rs4145333	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:31:68:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,119:32:120:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,121:32:121:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,144:32:144:1.00:2	0/1:0,147:33:147:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,148:32:148:1.00:2
chr2	179444939	rs2303838	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,28:30:55:0.509:2	./.	./.	0/1:22,38:30:60:0.633:2	./.	0/1:54,17:31:71:0.239:2	./.
chr2	179447848	rs4894029	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:177,4:33:181:0.022:2	0/1:84,64:29:148:0.432:2	./.	./.	0/1:99,56:29:155:0.361:2	./.	0/1:76,79:30:156:0.510:2	0/1:68,72:29:140:0.514:2
chr2	179451420	rs2042996	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,91:31:188:0.484:2	./.	0/1:189,6:30:195:0.031:2	0/1:102,92:32:194:0.474:2	./.	0/1:81,76:32:157:0.484:2	0/1:93,84:32:177:0.475:2
chr2	179452454	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,4:31:80:0.050:2	./.	./.	./.	./.	./.	./.	./.
chr2	179454394	rs1560221	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,56:31:101:0.554:2	./.	0/1:116,4:32:120:0.033:2	0/1:72,83:32:155:0.535:2	./.	0/1:56,64:32:120:0.533:2	0/1:87,99:32:186:0.532:2
chr2	179454817	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,4:32:148:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr2	179455207	rs2163009	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:126,72:31:198:0.364:2	./.	./.	0/1:113,83:30:196:0.423:2	./.	0/1:106,87:29:193:0.451:2	0/1:108,84:30:193:0.438:2
chr2	179455962	rs72646843	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,56:32:119:0.471:2	./.	./.	./.	./.	./.	./.	./.
chr2	179457147	rs16866406	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,29:30:52:0.558:2	./.	./.	0/1:36,36:31:72:0.500:2	./.	0/1:45,33:31:78:0.423:2	./.
chr2	179458591	rs2288569	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,15:30:40:0.375:2	./.	./.	0/1:24,30:31:54:0.556:2	./.	0/1:26,20:31:46:0.435:2	./.
chr2	179462494	rs35833641	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:45,43:29:88:0.489:2	0/1:37,30:30:67:0.448:2	0/1:9,4:31:13:0.308:2	./.	./.	./.	./.	0/1:79,55:29:134:0.410:2	./.	./.	0/1:67,71:30:138:0.514:2
chr2	179464527	rs1001238	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,12:28:22:0.545:2	./.	./.	0/1:34,30:29:64:0.469:2	./.	0/1:17,15:28:32:0.469:2	0/1:45,42:29:87:0.483:2
chr2	179472597	rs73036398	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,70:32:150:0.467:2
chr2	179475791	rs372419267	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:121,4:32:125:0.032:2	./.	./.	./.	./.	./.	./.
chr2	179482089	rs72677237	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,47:31:111:0.423:2	./.	./.	./.	./.	./.
chr2	179484965	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:31:81:0.049:2	./.	./.
chr2	179498042	rs6723526	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:50,55:32:105:0.524:2	0/1:45,32:33:77:0.416:2	0/1:1,8:33:9:0.889:2	./.	0/1:43,37:31:80:0.463:2	./.	./.	./.	./.	./.	./.
chr2	179516888	.	A	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:108,4:36:112:0.036:2	0/1:90,4:34:94:0.043:2	./.	0/1:133,5:33:138:0.036:2	0/1:73,17:33:91:0.189:2	0/1:150,7:33:158:0.045:2	0/1:67,14:34:81:0.173:2	0/1:101,4:30:105:0.038:2	0/1:144,9:36:154:0.059:2	0/1:143,17:33:160:0.106:2	0/1:152,10:31:162:0.062:2
chr2	179517230	rs73038314	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,14:32:51:0.275:2
chr2	179523797	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:160,5:30:165:0.030:2	./.	./.	./.	./.	./.	./.
chr2	179528378	rs2163008	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,31:32:49:0.633:2
chr2	179530162	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:31:107:0.037:2	./.	./.	./.	./.	./.
chr2	179537411	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	179539046	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:34:162:0.025:2	./.	./.
chr2	179543217	rs35112591	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,24:31:46:0.522:2	./.	./.	./.	./.	0/1:20,9:33:29:0.310:2	./.
chr2	179545859	rs36051007	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:6,8:32:14:0.571:2	0/1:5,7:32:12:0.583:2	./.	./.	./.	./.	./.	0/1:16,8:32:24:0.333:2	./.	./.	0/1:24,22:32:46:0.478:2
chr2	179547454	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,16:32:180:0.089:2	./.	./.	./.	./.
chr2	179554294	rs182934463	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,67:30:121:0.554:2	./.	./.	./.
chr2	179554305	rs2244492	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:42,50:33:92:0.543:2	0/1:34,23:32:57:0.404:2	0/1:6,6:32:12:0.500:2	./.	./.	./.	./.	0/1:60,42:32:102:0.412:2	./.	./.	0/1:0,103:32:103:1.00:2
chr2	179558366	rs2042995	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,28:30:80:0.350:2	./.	./.	0/1:78,57:29:135:0.422:2	./.	0/1:58,49:30:108:0.458:2	0/1:112,79:29:191:0.414:2
chr2	179560847	rs73038324	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,68:32:177:0.384:2
chr2	179569400	rs2742344	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,26:32:68:0.382:2
chr2	179569436	rs2742343	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,14:33:34:0.412:2
chr2	179574384	rs2742332	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,86:32:190:0.453:2
chr2	179575511	rs72648998	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,64:32:135:0.474:2	./.
chr2	179577871	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:34:193:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	179578730	rs2562839	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,41:32:105:0.390:2	./.	./.	0/1:56,52:33:108:0.481:2	./.	0/1:39,41:32:80:0.513:2	0/1:78,51:33:129:0.395:2
chr2	179579093	rs12693164	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,40:32:85:0.471:2	./.	./.	0/1:67,54:33:121:0.446:2	./.	0/1:44,51:33:95:0.537:2	./.
chr2	179579212	rs2562838	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,32:32:44:0.727:2	./.	./.	0/1:38,27:32:65:0.415:2	./.	0/1:26,21:31:47:0.447:2	0/1:37,46:33:83:0.554:2
chr2	179579822	rs2562836	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:107,75:29:182:0.412:2	./.	./.	0/1:97,87:30:184:0.473:2	./.	0/1:98,95:30:193:0.492:2	0/1:98,91:31:190:0.481:2
chr2	179579935	rs141856116	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,54:31:142:0.380:2
chr2	179581897	rs199619070	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,79:33:156:0.506:2	./.	./.
chr2	179582063	rs72648986	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,26:32:61:0.426:2
chr2	179582327	rs13390491	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,67:31:158:0.424:2	./.	./.	0/1:95,94:31:189:0.497:2	./.	0/1:102,75:31:177:0.424:2	./.
chr2	179582537	rs2627043	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,5:31:18:0.278:2	./.	./.	0/1:12,8:32:20:0.400:2	./.	0/1:14,11:32:25:0.440:2	0/1:10,9:32:19:0.474:2
chr2	179582853	rs72648982	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,14:32:26:0.538:2	./.	./.	./.	./.	./.
chr2	179583317	rs72648978	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,17:33:38:0.447:2	0/1:19,15:33:34:0.441:2	./.	0/1:25,28:32:53:0.528:2	0/1:27,18:32:45:0.400:2	./.	./.	./.	./.	./.	./.
chr2	179583496	rs16866465	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,28:32:55:0.509:2	./.	./.	0/1:28,42:33:70:0.600:2	./.	0/1:17,12:32:29:0.414:2	./.
chr2	179585266	rs2562831	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,38:32:38:1.00:2	./.	0/1:0,46:32:46:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,78:32:78:1.00:2
chr2	179586604	rs72648970	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:69,69:33:138:0.500:2	0/1:45,50:32:95:0.526:2	./.	./.	0/1:104,64:32:168:0.381:2	./.	./.	./.	./.	./.	./.
chr2	179587130	rs12693166	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,17:33:25:0.680:2	./.	./.	0/1:6,14:32:20:0.700:2	./.	0/1:8,14:32:22:0.636:2	./.
chr2	179588996	rs72648962	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,55:31:101:0.545:2
chr2	179590329	rs17355460	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,22:33:58:0.379:2	./.	./.	./.	./.	./.
chr2	179591958	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:31:148:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	179592370	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,64:29:118:0.542:2	./.	./.	./.	./.	./.
chr2	179593449	rs72648954	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,59:30:191:0.309:2
chr2	179597808	rs72648935	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,47:32:105:0.452:2
chr2	179598228	rs12993099	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,12:32:22:0.545:2	./.	./.	./.
chr2	179600563	rs2742348	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:32:88:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,8:30:8:1.00:2	0/1:1,106:31:107:0.991:2	0/1:0,67:31:67:1.00:2	0/1:0,94:31:94:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,87:31:87:1.00:2	0/1:0,127:32:127:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,128:32:128:1.00:2
chr2	179600648	rs2742347	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,66:32:144:0.458:2	0/1:102,66:32:168:0.393:2
chr2	179604160	rs1883085	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,33:32:66:0.500:2	./.
chr2	179604366	rs2562829	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,26:32:57:0.456:2	./.
chr2	179604742	rs1883084	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,11:32:19:0.579:2	./.
chr2	179605180	rs746578	C	A,T	.	PASS	AC=1,2;AF=0.111,0.222;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:BQ:DP:FA:SS	./.	./.	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/2:30:179:0.425:2	./.	./.	0/2:31:196:0.490:2	./.	0/1:32:187:0.541:2	./.
chr2	179605380	rs34618570	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:31:11:0.636:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	179605705	rs2742357	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,39:33:86:0.453:2	./.
chr2	179606538	rs2627037	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,19:33:40:0.475:2	0/1:42,37:33:79:0.468:2
chr2	179611711	rs66677602	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,53:32:150:0.353:2	./.
chr2	179612383	rs72648907	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,48:33:91:0.527:2	./.	./.
chr2	179612883	rs139669372	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,22:32:61:0.361:2	./.	./.	./.	./.	./.
chr2	179613191	rs140909116	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,100:33:185:0.541:2	./.	./.	./.	./.	./.
chr2	179614952	rs10803917	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,170:33:171:1.00:2	0/1:0,107:33:107:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,177:33:177:1.00:2	0/1:0,192:33:192:1.00:2	0/1:0,181:32:182:1.00:2	0/1:0,164:33:164:1.00:2	0/1:0,172:32:172:1.00:2	0/1:0,178:34:178:1.00:2	0/1:0,156:33:156:1.00:2	0/1:0,176:33:176:1.00:2
chr2	179615060	rs143253411	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,62:33:163:0.380:2
chr2	179615386	rs116593093	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,18:33:43:0.419:2
chr2	179615887	rs922984	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,91:32:91:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,75:33:75:1.00:2	0/1:1,36:31:37:0.973:2	0/1:0,81:32:81:1.00:2	0/1:0,52:32:52:1.00:2	0/1:2,55:32:57:0.965:2	0/1:0,78:33:78:1.00:2	0/1:30,41:32:71:0.577:2	0/1:69,43:32:112:0.384:2
chr2	179615931	rs922985	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,123:33:123:1.00:2	0/1:0,68:33:68:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,109:33:109:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,136:32:136:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,127:32:128:1.00:2	0/1:0,122:33:122:1.00:2	0/1:0,105:33:105:1.00:2	0/1:0,184:33:184:1.00:2
chr2	179615994	rs922986	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,109:30:109:1.00:2	0/1:0,78:29:78:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,126:29:126:1.00:2	0/1:0,62:29:62:1.00:2	0/1:0,147:29:147:1.00:2	0/1:0,62:29:62:1.00:2	0/1:0,137:29:137:1.00:2	0/1:0,130:30:130:1.00:2	0/1:0,113:30:113:1.00:2	0/1:0,172:29:172:1.00:2
chr2	179620951	rs7585334	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:31:59:1.00:2	0/1:1,30:31:31:0.968:2	0/1:0,4:31:4:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,44:32:44:1.00:2	0/1:18,10:32:28:0.357:2	0/1:0,43:31:43:1.00:2
chr2	179621184	rs72955212	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,57:31:124:0.463:2
chr2	179621477	rs6433728	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:32:87:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,65:30:65:1.00:2	0/1:0,70:30:70:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,116:32:117:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,88:31:88:1.00:2
chr2	179621503	rs72955213	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,25:31:85:0.294:2
chr2	179622407	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:131,4:31:135:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr2	179623758	rs2291310	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,114:32:114:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,121:31:121:1.00:2	0/1:3,89:31:92:0.967:2	0/1:0,128:31:128:1.00:2	0/1:0,96:32:97:1.00:2	0/1:3,117:31:120:0.975:2	0/1:0,170:32:170:1.00:2	0/1:69,62:32:131:0.473:2	0/1:3,154:32:157:0.981:2
chr2	179628918	rs34819099	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,32:32:51:0.627:2	./.
chr2	179628940	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:33:76:0.053:2	./.	./.	./.	./.	./.
chr2	179629363	rs4894043	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:32:66:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,103:32:103:1.00:2	0/1:0,97:31:97:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,88:33:88:1.00:2	0/1:0,88:33:88:1.00:2	0/1:0,92:32:92:1.00:2
chr2	179629461	rs2291311	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,90:31:90:1.00:2	0/1:1,78:31:79:0.987:2	0/1:0,77:31:77:1.00:2	0/1:2,84:32:86:0.977:2	0/1:0,83:32:83:1.00:2	0/1:0,78:33:78:1.00:2	0/1:30,21:32:51:0.412:2	0/1:0,86:32:86:1.00:2
chr2	179631214	rs2291312	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,54:32:127:0.425:2	./.
chr2	179634421	rs200875815	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,10:15:64:0.159:2	./.	0/1:6,6:16:12:0.500:2	0/1:37,28:13:65:0.431:2	0/1:52,27:15:79:0.342:2	0/1:51,42:17:93:0.452:2	0/1:54,32:12:86:0.372:2	0/1:46,36:14:82:0.439:2	./.	0/1:43,8:16:51:0.157:2	0/1:54,17:16:73:0.239:2
chr2	179634936	rs2306636	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,66:32:143:0.462:2	./.
chr2	179637861	rs56142888	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,33:32:86:0.384:2	./.
chr2	179638238	rs2291306	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,27:31:50:0.540:2	0/1:16,8:28:24:0.333:2	./.	0/1:22,20:30:42:0.476:2	0/1:29,18:30:47:0.383:2	./.	./.	./.	./.	./.	./.
chr2	179638721	rs4894048	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,39:33:100:0.390:2
chr2	179641975	rs12476289	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,29:32:70:0.414:2	./.
chr2	179644035	rs1552280	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,100:32:100:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,105:31:105:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,95:30:95:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,94:31:94:1.00:2	0/1:0,80:32:80:1.00:2	0/1:1,86:31:87:0.989:2	0/1:0,117:31:117:1.00:2
chr2	179644160	rs2291308	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,13:33:34:0.382:2	./.
chr2	179644855	rs10497520	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,117:33:117:1.00:2	0/1:1,81:33:82:0.988:2	0/1:0,12:33:12:1.00:2	0/1:0,145:33:145:1.00:2	0/1:33,52:32:85:0.612:2	0/1:0,126:32:127:1.00:2	0/1:0,93:33:93:1.00:2	0/1:2,130:33:132:0.985:2	0/1:0,156:34:156:1.00:2	0/1:70,56:33:126:0.444:2	0/1:111,71:33:182:0.390:2
chr2	179647546	rs55863869	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,46:31:73:0.630:2	./.
chr2	179650408	rs35813871	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,27:30:86:0.314:2	./.	0/1:1,80:30:81:0.988:2	./.	./.	0/1:60,49:32:109:0.450:2	./.	./.
chr2	179650701	rs6715406	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:61,49:30:110:0.445:2	0/1:40,18:31:58:0.310:2	0/1:10,9:31:19:0.474:2	./.	./.	./.	./.	0/1:2,145:30:147:0.986:2	./.	./.	0/1:73,48:30:121:0.397:2
chr2	179658175	rs11537855	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,3:32:23:0.130:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	179659892	rs148094198	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,37:33:89:0.416:2	./.	./.	./.	./.	./.	./.	./.
chr2	179659912	rs16866538	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,43:31:99:0.434:2	./.	./.	./.	./.	./.	./.
chr2	179665196	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:32:145:0.028:2	./.
chr2	179702067	rs369418999	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,38:31:102:0.373:2	./.	./.	./.	./.	./.	./.	./.
chr2	179702073	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:32:72:0.056:2	./.
chr2	179702268	rs1032283	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:32:74:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,73:33:73:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,81:31:81:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,73:33:73:1.00:2
chr2	179702437	rs13419085	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:35,31:33:66:0.470:2	0/1:27,28:32:55:0.509:2	./.	./.	0/1:66,48:32:114:0.421:2	./.	./.	./.	./.	./.	./.
chr2	179721032	rs12464157	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,64:32:116:0.552:2	./.
chr2	179721046	rs17362588	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,12:31:50:0.240:2	./.	0/1:54,59:33:113:0.522:2	0/1:56,39:33:95:0.411:2	./.
chr2	179730505	rs150991367	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,62:32:112:0.554:2	./.	./.	./.
chr2	179730604	rs144766496	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,22:33:77:0.286:2	./.	./.	./.	./.	./.	./.	./.
chr2	179732845	rs12988301	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,41:32:100:0.410:2	./.	./.	./.	./.	0/1:36,46:33:82:0.561:2
chr2	179749747	rs112292444	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,54:32:115:0.470:2	./.	./.	./.	./.	./.	./.	./.
chr2	179751485	rs114129666	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,4:29:16:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	179753366	rs182748406	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,37:32:105:0.352:2	./.	./.	./.	./.	./.	./.
chr2	179770175	rs34883828	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,51:30:87:0.586:2	./.	./.	0/1:64,52:32:116:0.448:2	./.	./.
chr2	179783470	rs72961212	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,37:34:120:0.308:2	./.	./.
chr2	179826072	rs61744343	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,90:30:199:0.452:2
chr2	179839833	rs10930846	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,16:30:40:0.400:2	0/1:14,14:30:28:0.500:2	./.	0/1:18,18:31:36:0.500:2	./.	./.	./.	0/1:31,36:30:67:0.537:2
chr2	179914640	rs61397643	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:56,43:31:99:0.434:2	0/1:19,40:32:59:0.678:2	./.	./.	0/1:49,49:30:98:0.500:2	./.	0/1:63,53:31:116:0.457:2	./.	./.	./.	./.
chr2	179979930	rs2289993	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:54,47:32:101:0.465:2	0/1:32,20:32:52:0.385:2	./.	0/1:48,70:33:118:0.593:2	0/1:38,46:33:84:0.548:2	./.	./.	./.	./.	./.	./.
chr2	179986553	rs56336305	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,58:32:97:0.598:2	./.	./.	./.	./.	./.	./.
chr2	180047908	rs6757681	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,75:33:75:1.00:2	0/1:0,47:33:47:1.00:2	./.	0/1:0,87:32:87:1.00:2	0/1:0,67:32:67:1.00:2	0/1:46,24:32:70:0.343:2	0/1:0,92:33:92:1.00:2	0/1:0,89:33:89:1.00:2	0/1:43,54:35:97:0.557:2	0/1:44,50:33:94:0.532:2	0/1:53,73:34:126:0.579:2
chr2	180308028	rs2367796	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,13:31:32:0.406:2	./.	./.	0/1:7,7:32:14:0.500:2
chr2	180311444	rs2271761	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,63:33:116:0.543:2	./.
chr2	180725568	rs146754630	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,10:27:48:0.208:2	./.	./.	./.	./.
chr2	180810180	rs6433817	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,129:32:132:0.977:2	0/1:1,84:32:85:0.988:2	0/1:0,25:32:25:1.00:2	0/1:62,38:32:100:0.380:2	0/1:49,37:31:86:0.430:2	0/1:0,101:31:101:1.00:2	0/1:44,23:32:67:0.343:2	0/1:2,106:32:108:0.981:2	./.	0/1:1,124:32:125:0.992:2	0/1:1,168:32:170:0.994:2
chr2	180810202	rs1046356	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,59:33:151:0.393:2	./.	./.
chr2	180810264	rs6433818	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,187:32:187:1.00:2	0/1:0,118:33:118:1.00:2	0/1:0,33:32:33:1.00:2	0/1:1,193:32:194:0.995:2	0/1:79,53:32:132:0.402:2	0/1:0,181:32:181:1.00:2	0/1:1,115:32:116:0.991:2	0/1:0,190:32:190:1.00:2	0/1:117,78:33:195:0.400:2	0/1:0,191:33:191:1.00:2	0/1:0,186:33:186:1.00:2
chr2	180810358	rs71425650	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,28:32:51:0.549:2	./.	./.	./.	./.
chr2	180815412	rs17778270	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,46:30:123:0.374:2	./.	./.	./.	./.	./.
chr2	180835792	rs3768837	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:31:51:1.00:2	0/1:2,43:31:45:0.956:2	0/1:0,4:30:4:1.00:2	0/1:0,53:31:53:1.00:2	0/1:31,14:30:45:0.311:2	0/1:0,48:30:48:1.00:2	0/1:1,46:30:47:0.979:2	0/1:0,67:31:67:1.00:2	./.	0/1:1,37:30:38:0.974:2	0/1:0,54:30:54:1.00:2
chr2	181854692	rs61080739	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:31:89:1.00:2	0/1:0,46:31:46:1.00:2	0/1:10,5:30:15:0.333:2	0/1:76,39:30:115:0.339:2	./.	0/1:54,32:30:86:0.372:2	./.	./.	./.	./.	0/1:59,47:31:106:0.443:2
chr2	181922476	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:33:99:0.040:2	./.
chr2	182347072	rs2305588	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,32:32:49:0.653:2	./.	./.	./.	0/1:23,20:31:43:0.465:2	./.	0/1:16,17:32:33:0.515:2	0/1:26,30:32:56:0.536:2
chr2	182374534	rs1143674	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,5:31:5:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,9:32:9:1.00:2	0/1:6,4:33:10:0.400:2	0/1:4,3:27:7:0.429:2	0/1:0,12:31:12:1.00:2	./.
chr2	182395345	rs1143676	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,77:33:155:0.497:2	0/1:47,35:33:82:0.427:2	0/1:6,12:32:18:0.667:2	0/1:80,65:33:145:0.448:2	0/1:0,140:32:140:1.00:2	0/1:1,151:32:152:0.993:2	0/1:0,142:32:142:1.00:2	0/1:73,64:33:137:0.467:2	0/1:0,140:34:140:1.00:2	0/1:0,159:33:159:1.00:2	./.
chr2	182399097	rs7562325	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:27:10:0.500:2	./.	0/1:2,63:28:65:0.969:2	0/1:4,80:29:84:0.952:2	0/1:1,58:28:59:0.983:2	0/1:88,62:29:150:0.413:2	0/1:64,67:29:131:0.511:2	0/1:0,83:29:83:1.00:2	./.
chr2	182399638	rs2124443	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:33:55:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,81:33:81:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,97:33:97:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,99:32:99:1.00:2
chr2	182403851	rs10180793	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:32:88:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,95:31:95:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,112:31:112:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,135:31:135:1.00:2	0/1:0,107:32:107:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,111:31:111:1.00:2
chr2	182413259	rs12997453	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,11:30:13:0.846:2	./.	0/1:0,43:32:44:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,57:33:57:1.00:2	0/1:40,32:32:72:0.444:2	0/1:29,49:33:78:0.628:2	0/1:0,62:32:62:1.00:2	./.
chr2	182413344	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:33:107:0.037:2	./.	./.
chr2	182414358	rs12623687	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:81,51:33:132:0.386:2	0/1:52,31:31:83:0.373:2	./.	0/1:82,77:32:159:0.484:2	./.	./.	./.	./.	0/1:95,97:33:192:0.505:2	./.	./.
chr2	182468803	rs61750041	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:14,8:32:22:0.364:2	0/1:9,8:32:17:0.471:2	./.	0/1:12,13:30:25:0.520:2	./.	./.	./.	./.	0/1:18,19:32:37:0.514:2	./.	./.
chr2	182521578	rs1473295	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,6:32:12:0.500:2	0/1:4,14:31:18:0.778:2	0/1:0,2:31:2:1.00:2	0/1:17,23:32:40:0.575:2	0/1:20,15:31:35:0.429:2	0/1:17,21:31:38:0.553:2	0/1:22,18:31:40:0.450:2	0/1:12,9:29:21:0.429:2	0/1:0,13:33:13:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,9:32:9:1.00:2
chr2	182543455	rs1801262	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:76,80:33:156:0.513:2	0/1:52,46:32:98:0.469:2	0/1:15,4:31:19:0.211:2	0/1:96,87:32:184:0.475:2	0/1:84,92:32:176:0.523:2	0/1:0,177:33:177:1.00:2	0/1:92,97:32:189:0.513:2	0/1:87,94:32:181:0.519:2	0/1:0,156:33:156:1.00:2	0/1:0,145:32:145:1.00:2	0/1:0,173:32:173:1.00:2
chr2	182756900	rs114985669	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,46:32:86:0.535:2	./.
chr2	182763586	rs3731693	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,35:31:72:0.486:2	./.	./.	./.	./.	./.	./.	./.
chr2	182774700	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,5:25:37:0.135:2	./.	./.	./.	./.	./.	./.
chr2	182780126	rs78774163	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,40:31:104:0.385:2	./.	./.	./.
chr2	182780307	rs75716247	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,59:32:128:0.461:2	./.	./.	./.	./.	./.	./.	./.
chr2	182780874	rs17647806	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,111:30:114:0.974:2
chr2	182792984	rs2303554	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,12:30:29:0.414:2	./.	./.	./.	./.	./.	./.	./.
chr2	182850829	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:33:12:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	182926144	rs3754930	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,74:32:138:0.536:2	./.
chr2	182981968	rs1882212	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:29:16:0.375:2	./.	0/1:62,35:29:97:0.361:2	./.	./.	./.	./.	0/1:72,42:29:114:0.368:2	0/1:82,75:29:157:0.478:2
chr2	183051220	rs371846119	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:29:96:0.042:2	./.	./.	./.	./.
chr2	183387033	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:33:112:0.036:2
chr2	183584755	rs6729801	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,11:32:21:0.524:2	0/1:7,8:29:15:0.533:2	0/1:0,3:32:3:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,9:27:9:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,16:32:16:1.00:2	0/1:10,4:32:14:0.286:2	0/1:16,10:32:26:0.385:2	0/1:7,5:31:12:0.417:2	0/1:0,19:32:19:1.00:2
chr2	183593697	rs288280	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,34:31:63:0.540:2	0/1:16,14:32:30:0.467:2	0/1:1,11:31:12:0.917:2	0/1:0,43:31:43:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,64:30:65:1.00:2	0/1:3,37:32:40:0.925:2	0/1:46,22:31:68:0.324:2	0/1:0,77:32:77:1.00:2	0/1:28,20:30:48:0.417:2	0/1:0,71:30:71:1.00:2
chr2	183616913	rs61748254	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,13:33:34:0.382:2	0/1:13,13:33:26:0.500:2	./.	./.	./.	./.	./.	./.	0/1:22,18:34:40:0.450:2	./.	./.
chr2	183622547	rs288334	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,6:32:12:0.500:2	0/1:1,3:31:4:0.750:2	0/1:0,2:31:2:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,16:31:16:1.00:2	0/1:2,5:32:7:0.714:2	0/1:0,11:32:11:1.00:2	0/1:6,5:33:11:0.455:2	0/1:0,20:32:20:1.00:2
chr2	183627504	rs192618	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,90:33:168:0.536:2	0/1:34,42:32:76:0.553:2	0/1:0,26:33:26:1.00:2	0/1:0,164:33:164:1.00:2	0/1:1,147:32:149:0.993:2	0/1:2,182:32:184:0.989:2	0/1:3,132:33:135:0.978:2	0/1:98,84:32:182:0.462:2	0/1:0,189:34:189:1.00:2	0/1:69,85:33:154:0.552:2	0/1:0,164:33:164:1.00:2
chr2	183699584	rs7775	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,57:32:138:0.413:2	0/1:42,27:32:70:0.391:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	183699682	rs112094045	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,28:31:51:0.549:2	./.	./.	./.
chr2	183703336	rs288326	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:30:7:0.571:2	0/1:24,30:31:54:0.556:2	./.	0/1:26,26:31:52:0.500:2	0/1:37,33:31:70:0.471:2	0/1:43,21:31:64:0.328:2	./.	./.	0/1:51,37:32:88:0.420:2
chr2	183731104	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:31:142:0.028:2	./.	./.
chr2	183799558	rs9288088	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,67:33:67:1.00:2	0/1:0,34:32:34:1.00:2	./.	0/1:61,52:32:113:0.460:2	0/1:3,44:31:47:0.936:2	0/1:59,41:31:100:0.410:2	0/1:1,47:32:48:0.979:2	0/1:0,62:32:62:1.00:2	0/1:0,90:33:90:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,102:32:102:1.00:2
chr2	183806814	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,6:32:141:0.043:2	./.	./.	./.	./.
chr2	183806826	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,7:30:160:0.044:2	./.	./.	./.	./.
chr2	183806852	rs148488585	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,6:31:153:0.039:2	./.	./.	./.	./.
chr2	183826987	rs184228927	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,38:32:78:0.487:2	./.	./.	./.	./.
chr2	183850877	rs41270217	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,5:32:6:0.833:2	0/1:51,34:30:85:0.400:2	./.	0/1:43,34:31:77:0.442:2	./.	./.	./.	./.	./.
chr2	183948210	rs16823717	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,27:29:70:0.386:2	./.	./.	./.	./.
chr2	185800905	rs12476147	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:30:2:1.00:2	0/1:0,36:31:36:1.00:2	0/1:1,36:30:37:0.973:2	./.	0/1:19,16:30:35:0.457:2	0/1:19,11:30:30:0.367:2	0/1:2,35:31:37:0.946:2	./.	0/1:42,17:32:59:0.288:2
chr2	185801365	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,6:30:88:0.068:2	./.
chr2	185801559	rs35676856	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,24:33:59:0.407:2	0/1:18,10:32:29:0.357:2	./.	./.	./.	0/1:35,28:31:63:0.444:2	./.	./.	./.	./.	0/1:42,35:32:77:0.455:2
chr2	185801597	rs61739290	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,27:29:76:0.355:2	0/1:20,14:27:34:0.412:2	./.	./.	./.	0/1:59,58:28:117:0.496:2	./.	./.	./.	./.	0/1:70,57:28:127:0.449:2
chr2	185801747	rs4667001	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,33:31:33:1.00:2	0/1:1,20:30:21:0.952:2	./.	0/1:11,8:30:19:0.421:2	0/1:16,12:31:28:0.429:2	0/1:0,35:32:35:1.00:2	./.	0/1:33,14:29:47:0.298:2
chr2	185801755	rs4667002	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,16:30:39:0.410:2	0/1:19,12:30:31:0.387:2	0/1:1,10:29:11:0.909:2	0/1:0,33:31:33:1.00:2	0/1:0,26:29:26:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,23:29:23:1.00:2	0/1:16,15:30:31:0.484:2	0/1:0,34:29:34:1.00:2	./.	0/1:0,45:30:46:1.00:2
chr2	185801756	rs61739288	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,16:32:38:0.421:2	0/1:18,12:32:30:0.400:2	./.	./.	./.	0/1:23,7:32:30:0.233:2	./.	./.	./.	./.	0/1:20,27:33:47:0.574:2
chr2	185801917	rs728534	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,17:33:28:0.607:2	0/1:16,25:31:41:0.610:2	./.	./.	./.	0/1:15,16:34:31:0.516:2	./.	./.
chr2	185802243	rs1366842	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,3:31:10:0.300:2	0/1:0,52:31:52:1.00:2	0/1:0,31:30:31:1.00:2	./.	0/1:25,23:31:48:0.479:2	0/1:35,27:32:62:0.435:2	0/1:0,57:32:57:1.00:2	./.	0/1:35,22:32:57:0.386:2
chr2	185802363	rs12477430	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,16:30:49:0.327:2	0/1:15,20:31:35:0.571:2	0/1:0,2:30:2:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,33:31:33:1.00:2	0/1:32,12:32:44:0.273:2	0/1:30,16:30:46:0.348:2	0/1:24,25:30:49:0.510:2	0/1:0,49:32:49:1.00:2	./.	0/1:0,58:30:58:1.00:2
chr2	185803126	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,37:32:75:0.493:2	./.	./.	./.	./.
chr2	185803364	rs3731834	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,9:30:16:0.563:2	0/1:32,41:33:73:0.562:2	0/1:49,57:32:106:0.538:2	./.	./.	0/1:54,61:32:115:0.530:2	./.	./.	./.
chr2	185803445	rs112183442	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,23:30:47:0.489:2	./.	./.	./.	./.	./.
chr2	186670104	rs7576532	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,98:32:98:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,89:32:89:1.00:2	0/1:2,66:31:68:0.971:2	0/1:0,78:32:78:1.00:2	0/1:1,85:32:87:0.988:2	0/1:0,91:32:91:1.00:2	0/1:0,114:32:114:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,129:32:129:1.00:2
chr2	186670780	rs16827154	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,10:32:31:0.323:2	0/1:6,6:31:12:0.500:2	./.	./.	0/1:1,18:30:19:0.947:2	0/1:0,33:30:33:1.00:2	0/1:11,7:32:18:0.389:2	0/1:14,4:31:18:0.222:2	0/1:18,10:32:28:0.357:2	./.	./.
chr2	186670979	rs4666689	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:32:80:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,6:31:6:1.00:2	0/1:1,75:32:76:0.987:2	0/1:2,57:32:59:0.966:2	0/1:2,89:32:91:0.978:2	0/1:0,74:32:74:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,126:33:126:1.00:2	./.	0/1:0,107:32:107:1.00:2
chr2	186671357	rs17826534	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,19:32:37:0.514:2	0/1:14,4:32:18:0.222:2	./.	./.	0/1:0,21:31:21:1.00:2	0/1:0,43:31:43:1.00:2	0/1:18,11:32:29:0.379:2	0/1:8,16:31:24:0.667:2	0/1:32,25:33:57:0.439:2	./.	./.
chr2	186671912	rs1862066	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:43,45:33:88:0.511:2	0/1:28,36:32:64:0.563:2	0/1:6,4:32:10:0.400:2	./.	0/1:1,50:31:51:0.980:2	0/1:0,66:31:66:1.00:2	0/1:46,33:32:79:0.418:2	0/1:62,39:32:101:0.386:2	0/1:55,51:32:106:0.481:2	./.	./.
chr2	186672527	rs72900086	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:41,27:30:68:0.397:2	0/1:17,13:32:30:0.433:2	./.	./.	0/1:0,62:31:62:1.00:2	0/1:22,34:31:56:0.607:2	0/1:32,21:31:53:0.396:2	./.	./.	./.	./.
chr2	186672897	rs4666690	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,60:33:124:0.484:2	0/1:43,43:32:86:0.500:2	0/1:11,6:33:17:0.353:2	0/1:0,136:33:136:1.00:2	./.	./.	0/1:41,52:33:93:0.559:2	0/1:63,64:33:127:0.504:2	0/1:63,77:34:140:0.550:2	./.	0/1:1,159:33:160:0.994:2
chr2	186678633	rs17826666	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,146:31:150:0.973:2	./.	./.	./.	./.	0/1:94,68:32:162:0.420:2	./.	0/1:87,95:32:182:0.522:2
chr2	186680189	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,5:29:94:0.053:2	./.	./.	./.	./.	./.
chr2	186697876	rs1468999	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:32:55:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,48:34:48:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,59:34:59:1.00:2	0/1:0,59:33:59:1.00:2	0/1:0,73:33:74:1.00:2
chr2	187370246	rs373154978	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,21:32:59:0.356:2	./.	./.	./.	./.
chr2	187371492	rs184966157	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,27:31:53:0.509:2	./.	./.	./.	./.
chr2	187465108	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:32:71:0.056:2	./.	./.	./.	./.
chr2	187487160	rs9333288	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:31:67:1.00:2	0/1:0,27:31:27:1.00:2	0/1:9,6:30:15:0.400:2	0/1:3,60:30:63:0.952:2	0/1:0,34:29:34:1.00:2	0/1:27,21:30:48:0.438:2	0/1:26,19:31:45:0.422:2	0/1:0,45:31:45:1.00:2	0/1:31,34:32:65:0.523:2	./.	0/1:51,49:30:100:0.490:2
chr2	187498107	rs9333289	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:38,18:33:56:0.321:2	0/1:25,23:32:48:0.479:2	./.	./.	./.	./.	0/1:23,19:33:42:0.452:2	./.	0/1:60,33:33:93:0.355:2	0/1:1,60:33:61:0.984:2	0/1:60,50:32:110:0.455:2
chr2	187532417	rs2230616	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:30:63:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,93:30:93:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,80:30:80:1.00:2	0/1:0,119:31:119:1.00:2
chr2	187558960	rs2276562	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,19:29:19:1.00:2	./.	./.	0/1:8,4:27:12:0.333:2	0/1:4,12:29:16:0.750:2	./.	./.
chr2	187559047	rs144403657	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	0/1:47,9:32:56:0.161:2	./.	0/1:39,8:33:47:0.170:2	./.	./.
chr2	187626338	rs13026081	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:83,78:31:162:0.484:2	0/1:49,35:31:84:0.417:2	./.	./.	./.	./.	0/1:72,52:30:124:0.419:2	./.	0/1:87,70:31:157:0.446:2	0/1:0,129:31:129:1.00:2	0/1:95,80:31:175:0.457:2
chr2	187627337	rs17855087	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,22:32:59:0.373:2	./.	0/1:31,44:31:75:0.587:2	./.	./.	./.	./.	./.
chr2	187692908	rs17852916	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,64:30:137:0.467:2	./.	./.	0/1:41,31:29:72:0.431:2	0/1:93,64:29:157:0.408:2	./.	0/1:2,111:29:113:0.982:2	./.
chr2	187692939	rs202052356	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:122,12:21:135:0.090:2	./.	./.	0/1:137,12:16:149:0.081:2	./.	0/1:105,12:14:118:0.103:2	./.	./.	./.	0/1:94,20:17:114:0.175:2	0/1:121,23:13:144:0.160:2
chr2	187692941	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,9:18:128:0.071:2
chr2	187692983	rs17856918	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,69:30:141:0.489:2	./.	./.	0/1:42,37:30:79:0.468:2	0/1:94,58:30:152:0.382:2	./.	0/1:1,91:31:92:0.989:2	./.
chr2	187693003	rs10195632	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,63:30:125:0.504:2	./.	./.	0/1:38,32:30:70:0.457:2	0/1:86,47:30:133:0.353:2	./.	0/1:1,92:29:93:0.989:2	./.
chr2	187693044	rs17852915	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,39:30:83:0.470:2	./.	./.	0/1:31,21:30:52:0.404:2	0/1:55,24:30:79:0.304:2	./.	0/1:1,71:31:72:0.986:2	./.
chr2	187693104	rs10172225	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,23:30:64:0.359:2	./.	./.	0/1:25,11:29:36:0.306:2	0/1:34,16:29:50:0.320:2	./.	0/1:0,60:31:60:1.00:2	./.
chr2	187693155	rs10195758	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,11:32:32:0.344:2	./.	./.	0/1:7,5:32:12:0.417:2	0/1:17,6:31:23:0.261:2	./.	0/1:0,30:32:30:1.00:2	./.
chr2	187697883	rs10164815	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,92:32:194:0.474:2	./.	./.	0/1:69,47:33:116:0.405:2	0/1:95,72:33:167:0.431:2	./.	0/1:4,165:33:169:0.976:2	./.
chr2	187698707	rs6434197	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,25:29:43:0.581:2	./.	./.	0/1:35,23:30:58:0.397:2	0/1:20,51:30:72:0.718:2	./.	0/1:0,48:30:48:1.00:2	./.
chr2	187698751	rs7559533	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:14,13:32:27:0.481:2	0/1:8,7:33:15:0.467:2	./.	0/1:12,5:33:17:0.294:2	./.	0/1:0,39:32:39:1.00:2	./.	./.	./.	./.	0/1:31,26:33:57:0.456:2
chr2	187702055	rs149540467	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,46:31:139:0.331:2	./.	./.	./.
chr2	187709416	rs113850014	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.
chr2	187713866	rs6725956	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,31:31:60:0.517:2	./.	./.	0/1:21,29:31:50:0.580:2	0/1:22,23:32:45:0.511:2	./.	0/1:0,28:31:28:1.00:2	./.
chr2	187713922	rs6726153	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:29:12:0.500:2	./.	./.	0/1:0,4:28:4:1.00:2	0/1:5,4:31:9:0.444:2	./.	0/1:0,6:29:6:1.00:2	./.
chr2	188211112	rs3771095	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,13:30:33:0.394:2	./.	./.	./.	./.	./.	0/1:0,32:31:32:1.00:2	./.
chr2	188250301	rs698577	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:31:68:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,9:31:9:1.00:2	0/1:1,85:30:86:0.988:2	0/1:0,53:30:53:1.00:2	0/1:0,76:30:77:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,67:30:67:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,141:31:141:1.00:2
chr2	188331711	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:32:97:0.041:2	./.	./.
chr2	188343497	rs7586970	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,8:33:18:0.444:2	./.	./.	0/1:36,27:33:63:0.429:2	0/1:0,39:32:39:1.00:2	./.	0/1:55,46:33:101:0.455:2	./.	./.
chr2	189599497	rs72902678	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,79:32:174:0.454:2	./.	./.	./.
chr2	189849956	rs180938313	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,63:32:152:0.414:2	./.	./.	./.
chr2	189862048	rs7579815	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,24:33:60:0.400:2	./.	./.	./.	./.
chr2	189862097	rs7579903	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,19:32:36:0.528:2	./.	./.	./.	./.
chr2	189863389	rs13306272	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,30:31:30:1.00:2	./.	0/1:2,158:31:160:0.988:2	0/1:112,84:31:197:0.429:2	./.	0/1:117,81:31:198:0.409:2	./.	0/1:97,95:31:193:0.495:2	./.
chr2	189864080	rs1800255	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,9:29:10:0.900:2	./.	0/1:0,29:29:29:1.00:2	0/1:29,15:29:44:0.341:2	./.	0/1:27,26:29:53:0.491:2	./.	0/1:32,28:30:60:0.467:2	./.
chr2	189864582	rs1801184	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:118,4:32:122:0.033:2	./.	0/1:80,60:32:140:0.429:2	./.	./.	./.	./.
chr2	189866199	rs2271682	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,86:31:86:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,63:32:63:1.00:2	0/1:48,28:31:76:0.368:2	0/1:0,95:32:95:1.00:2	0/1:0,102:33:102:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,99:31:99:1.00:2
chr2	189868535	rs28763878	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,14:31:44:0.318:2	./.
chr2	189871644	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,13:32:122:0.107:2	0/1:70,4:32:74:0.054:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	189875421	rs1516446	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:33:68:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,98:33:98:1.00:2	0/1:2,103:33:105:0.981:2	0/1:0,94:34:94:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,95:32:95:1.00:2
chr2	189898846	rs147420365	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,53:33:105:0.505:2
chr2	189898847	rs78905646	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,48:31:102:0.471:2	./.	./.	./.	./.	./.
chr2	189904203	rs10208525	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:29:9:0.333:2	./.	./.	./.	./.	./.	./.	0/1:32,27:30:59:0.458:2	./.
chr2	189904233	rs10197596	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	./.	./.	./.	./.	0/1:21,18:30:39:0.462:2	./.
chr2	189907937	rs6434312	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:30:44:1.00:2	0/1:0,32:29:32:1.00:2	0/1:0,5:30:5:1.00:2	0/1:1,44:30:45:0.978:2	0/1:0,35:30:35:1.00:2	./.	0/1:0,40:29:40:1.00:2	0/1:30,21:29:52:0.412:2	0/1:0,45:30:45:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,52:29:52:1.00:2
chr2	189918622	rs116298748	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,71:32:142:0.504:2	./.	./.	./.	./.	./.
chr2	189921776	rs73978812	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,50:32:100:0.500:2	./.	./.	./.	./.	./.
chr2	189931144	rs35852101	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,26:32:38:0.684:2	./.	./.	./.	./.	./.
chr2	189932764	rs35830636	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:34,31:32:65:0.477:2	0/1:24,14:32:38:0.368:2	./.	./.	./.	./.	./.	0/1:51,39:30:90:0.433:2	0/1:36,36:32:72:0.500:2	./.	./.
chr2	189932831	rs2229495	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,51:31:52:0.981:2	0/1:0,40:30:40:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,71:31:72:1.00:2	0/1:0,53:30:53:1.00:2	0/1:1,63:30:64:0.984:2	0/1:1,63:30:64:0.984:2	0/1:35,26:31:61:0.426:2	0/1:0,61:31:61:1.00:2	0/1:0,31:30:31:1.00:2	0/1:1,76:30:77:0.987:2
chr2	189943304	rs73978832	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,34:31:74:0.459:2	./.	./.	./.	./.	./.
chr2	189948696	rs56310996	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	0/1:0,22:30:22:1.00:2	./.	./.	./.	0/1:14,12:31:26:0.462:2	./.
chr2	189953508	rs58106884	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,18:30:36:0.500:2	./.	./.	0/1:2,125:31:129:0.984:2	./.	./.	./.	0/1:83,60:32:143:0.420:2	./.
chr2	189963501	rs148220961	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:9,7:33:16:0.438:2	./.	./.	./.	./.	./.	0/1:10,4:29:14:0.286:2	./.	./.	./.	./.
chr2	189964891	rs56380683	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:32:10:0.600:2	./.	./.	0/1:1,143:32:144:0.993:2	./.	./.	./.	0/1:65,40:33:105:0.381:2	./.
chr2	189974958	rs4128539	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:33:40:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,22:32:22:1.00:2	0/1:1,22:30:23:0.957:2	0/1:25,19:32:44:0.432:2	0/1:0,48:32:48:1.00:2	0/1:1,27:32:28:0.964:2	0/1:0,29:32:29:1.00:2
chr2	189975075	rs76511879	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,35:29:95:0.368:2	./.	./.	./.
chr2	190313570	rs28760459	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,59:30:189:0.312:2	./.	./.	./.	./.	./.
chr2	190314052	rs10196323	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,7:32:19:0.389:2	./.	./.	./.	./.	./.
chr2	190316625	rs13389403	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,8:29:25:0.320:2	./.	./.	./.	./.	./.
chr2	190320083	rs6737615	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,44:32:83:0.530:2	./.	./.	./.	./.	./.
chr2	190323530	rs1157910	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,135:28:138:0.978:2	0/1:0,78:28:78:1.00:2	./.	0/1:5,147:28:152:0.967:2	0/1:1,147:29:148:0.993:2	./.	0/1:86,79:28:165:0.479:2	0/1:103,95:28:198:0.480:2	0/1:3,163:29:167:0.982:2	./.	0/1:76,81:28:157:0.516:2
chr2	190329873	rs13429203	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,60:29:122:0.492:2	./.	./.	./.	./.	./.
chr2	190430177	rs2304704	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,78:32:80:0.987:2	0/1:0,50:32:50:1.00:2	0/1:5,6:33:11:0.545:2	0/1:1,89:32:90:0.989:2	0/1:0,60:32:60:1.00:2	0/1:61,42:32:103:0.408:2	./.	0/1:48,57:32:105:0.543:2	0/1:0,90:33:90:1.00:2	0/1:37,24:32:61:0.393:2	0/1:39,46:32:85:0.541:2
chr2	190445194	rs11568351	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,65:30:109:0.602:2	0/1:49,33:27:82:0.402:2	./.	0/1:36,32:30:68:0.471:2	./.
chr2	190531031	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:32:143:0.028:2	./.	./.
chr2	190531426	rs1437880	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:33:39:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,3:33:3:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,67:33:67:1.00:2
chr2	190531615	rs3828267	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,22:32:45:0.489:2	./.	./.	0/1:17,25:32:42:0.595:2	0/1:35,25:32:60:0.417:2	./.	./.	./.
chr2	190531645	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,6:31:89:0.067:2
chr2	190561060	rs113995284	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,34:31:113:0.304:2	./.	./.	./.	./.	./.
chr2	190571776	rs16831887	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,31:31:66:0.470:2	./.
chr2	190595258	rs1225090	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:33:41:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,76:33:76:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,80:32:81:1.00:2
chr2	190602513	rs1225099	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:29:39:1.00:2	0/1:0,32:28:32:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,54:28:54:1.00:2	0/1:0,26:27:26:1.00:2	0/1:0,50:28:50:1.00:2	0/1:0,18:27:18:1.00:2	0/1:0,53:27:53:1.00:2	0/1:0,58:29:58:1.00:2	0/1:0,34:28:34:1.00:2	0/1:0,76:28:76:1.00:2
chr2	190606152	rs143926631	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,35:34:79:0.443:2	./.	./.	./.	./.	./.	./.	./.
chr2	190617643	rs2243876	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,140:30:140:1.00:2	0/1:0,75:30:75:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,159:31:159:1.00:2	0/1:1,163:30:165:0.994:2	0/1:1,172:30:173:0.994:2	0/1:0,158:30:158:1.00:2	0/1:1,160:30:161:0.994:2	0/1:0,163:30:163:1.00:2	0/1:0,125:30:125:1.00:2	0/1:0,172:30:172:1.00:2
chr2	190617700	rs16831960	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,41:28:88:0.466:2	./.	./.	./.	0/1:47,28:28:75:0.373:2	./.
chr2	190620216	rs75321854	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,38:31:86:0.442:2	./.
chr2	190708712	rs2066459	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,20:31:49:0.408:2	./.	./.	./.	./.	./.	./.
chr2	190719607	rs151325573	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,19:30:25:0.760:2	./.	./.	./.	./.	./.
chr2	190722170	rs735558	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,115:31:115:1.00:2	./.	./.	./.	./.	./.
chr2	190925077	rs1805086	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,27:33:60:0.450:2	./.	./.
chr2	191064753	rs6753459	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,32:31:78:0.410:2	0/1:40,21:32:61:0.344:2	./.	0/1:66,46:31:112:0.411:2	0/1:63,29:30:92:0.315:2	./.	./.	0/1:67,48:30:115:0.417:2	./.	./.	./.
chr2	191065595	rs2271270	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,20:32:33:0.606:2	0/1:12,10:32:22:0.455:2	./.	0/1:10,9:32:19:0.474:2	0/1:7,6:32:13:0.462:2	./.	./.	0/1:8,16:31:24:0.667:2	./.	./.	./.
chr2	191066683	rs4853685	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:55,48:32:103:0.466:2	0/1:24,24:32:48:0.500:2	./.	0/1:78,52:32:130:0.400:2	0/1:42,37:31:79:0.468:2	./.	./.	0/1:93,49:31:142:0.345:2	./.	./.	./.
chr2	191066769	rs4853686	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:32:65:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,78:31:78:1.00:2	0/1:1,52:30:53:0.981:2	0/1:0,96:31:96:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,120:31:120:1.00:2
chr2	191066913	rs3749015	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,41:33:80:0.513:2	0/1:29,6:32:35:0.171:2	./.	0/1:26,26:33:52:0.500:2	0/1:29,24:31:53:0.453:2	./.	./.	0/1:45,32:33:77:0.416:2	./.	./.	./.
chr2	191066970	rs3749016	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:59,52:32:111:0.468:2	0/1:44,14:31:58:0.241:2	./.	0/1:47,45:32:92:0.489:2	0/1:42,32:30:74:0.432:2	./.	./.	0/1:69,52:31:121:0.430:2	./.	./.	./.
chr2	191067233	rs55815425	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,38:31:87:0.437:2	0/1:34,29:32:64:0.460:2	./.	0/1:73,33:33:106:0.311:2	0/1:38,37:32:75:0.493:2	./.	./.	0/1:82,52:32:134:0.388:2	./.	./.	./.
chr2	191067824	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:167,4:34:171:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr2	191068061	rs11216	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:45,54:32:99:0.545:2	0/1:25,30:32:55:0.545:2	./.	0/1:79,52:32:131:0.397:2	0/1:71,36:32:107:0.336:2	./.	./.	0/1:68,48:32:116:0.414:2	./.	./.	./.
chr2	191125911	rs74832989	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,17:32:41:0.415:2	0/1:10,11:31:21:0.524:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	191161622	rs1058180	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,90:30:178:0.506:2	0/1:74,48:29:122:0.393:2	0/1:0,24:31:24:1.00:2	0/1:110,72:30:182:0.396:2	0/1:87,55:30:142:0.387:2	0/1:2,176:30:178:0.989:2	0/1:1,156:30:157:0.994:2	0/1:118,67:30:185:0.362:2	0/1:0,181:31:181:1.00:2	0/1:0,145:29:145:1.00:2	0/1:0,184:30:185:1.00:2
chr2	191184475	rs291466	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,67:29:131:0.511:2	0/1:39,36:29:75:0.480:2	0/1:0,13:27:13:1.00:2	0/1:86,87:29:173:0.503:2	0/1:95,86:30:181:0.475:2	0/1:0,167:29:167:1.00:2	0/1:4,150:30:155:0.974:2	0/1:89,87:29:176:0.494:2	0/1:95,71:29:166:0.428:2	0/1:0,152:30:152:1.00:2	0/1:1,145:30:146:0.993:2
chr2	191208795	rs760307	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	0/1:0,3:22:3:1.00:2	./.	./.	./.
chr2	191224981	rs4656	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:20,14:33:34:0.412:2	0/1:12,11:32:23:0.478:2	./.	0/1:25,20:32:45:0.444:2	./.	./.	0/1:18,13:32:31:0.419:2	0/1:22,22:33:44:0.500:2	./.	./.	0/1:26,21:32:47:0.447:2
chr2	191227433	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,54:32:114:0.474:2
chr2	191231458	rs11544940	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,27:32:74:0.365:2	0/1:35,18:33:53:0.340:2	0/1:5,3:28:8:0.375:2	0/1:41,35:32:76:0.461:2	./.	0/1:48,34:32:82:0.415:2	0/1:0,60:32:60:1.00:2	0/1:39,30:32:69:0.435:2	0/1:50,61:33:111:0.550:2	./.	0/1:41,34:32:75:0.453:2
chr2	191231503	rs10931450	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:39,32:31:71:0.451:2	0/1:39,21:31:60:0.350:2	./.	0/1:48,41:30:89:0.461:2	./.	./.	./.	0/1:61,41:30:103:0.402:2	./.	./.	./.
chr2	191235610	rs7592352	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,33:32:61:0.541:2	./.	./.	./.	./.
chr2	191235901	rs1882891	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,11:31:31:0.355:2	0/1:16,11:29:27:0.407:2	0/1:0,6:32:6:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,31:29:31:1.00:2	0/1:0,50:30:50:1.00:2	0/1:18,11:30:29:0.379:2	0/1:0,28:31:28:1.00:2	0/1:0,37:31:37:1.00:2
chr2	191301368	rs9646748	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,44:32:79:0.557:2	0/1:2,52:32:54:0.963:2	./.	0/1:3,54:32:57:0.947:2	./.	0/1:0,62:33:62:1.00:2	./.	0/1:0,87:32:87:1.00:2
chr2	191354530	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,5:27:123:0.041:2	./.
chr2	191379268	rs4586658	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,16:32:31:0.516:2	0/1:1,167:32:168:0.994:2	0/1:99,73:32:173:0.424:2	0/1:90,65:32:155:0.419:2	0/1:4,155:32:159:0.975:2	0/1:89,73:32:162:0.451:2	0/1:89,88:33:177:0.497:2	0/1:80,85:32:165:0.515:2	0/1:73,76:32:149:0.510:2
chr2	191383495	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,8:16:82:0.098:2
chr2	191383544	rs187554649	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,29:31:65:0.446:2	./.	./.	./.
chr2	191850391	rs191364028	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,31:33:52:0.596:2	0/1:17,15:33:32:0.469:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	191874667	rs2066802	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,28:32:77:0.364:2	0/1:60,76:32:136:0.559:2	./.	./.	./.	0/1:39,43:33:82:0.524:2	./.
chr2	191900999	rs77509921	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,7:15:40:0.175:2	./.	./.	./.	./.	./.	./.	./.
chr2	191922841	rs3024866	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,29:33:61:0.475:2	0/1:16,19:32:35:0.543:2	./.	0/1:37,17:32:54:0.315:2	0/1:0,38:31:38:1.00:2	0/1:1,59:31:60:0.983:2	0/1:25,28:32:53:0.528:2	0/1:33,31:32:64:0.484:2	./.	0/1:1,66:32:67:0.985:2	0/1:41,43:32:84:0.512:2
chr2	192160839	rs17854823	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,64:33:154:0.416:2	0/1:36,56:32:92:0.609:2	0/1:75,78:32:153:0.510:2	0/1:0,85:32:85:1.00:2	./.	0/1:79,85:33:164:0.518:2	0/1:65,56:32:121:0.463:2	0/1:102,87:32:189:0.460:2
chr2	192160875	rs4853575	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,34:32:103:0.330:2	0/1:26,39:32:65:0.600:2	0/1:59,55:31:114:0.482:2	0/1:0,56:32:56:1.00:2	./.	0/1:51,64:33:115:0.557:2	0/1:49,39:32:88:0.443:2	0/1:86,76:32:162:0.469:2
chr2	192214966	rs59642822	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,27:33:27:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,2:33:2:1.00:2	./.	0/1:5,10:32:15:0.667:2	0/1:20,6:33:26:0.231:2	./.	0/1:24,10:33:34:0.294:2	0/1:21,8:33:29:0.276:2	./.	0/1:28,16:33:44:0.364:2
chr2	192250726	rs13018796	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,167:32:167:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,186:31:186:1.00:2	0/1:1,188:31:189:0.995:2	0/1:0,186:31:186:1.00:2	0/1:0,179:32:179:1.00:2	0/1:0,180:31:180:1.00:2	0/1:0,181:32:181:1.00:2	0/1:0,189:32:189:1.00:2	0/1:0,182:31:182:1.00:2
chr2	192257891	rs148788532	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,39:31:97:0.402:2	./.	./.	./.
chr2	192279327	rs2271767	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,7:34:7:1.00:2	0/1:0,70:33:70:1.00:2	0/1:0,37:32:37:1.00:2	0/1:1,39:32:40:0.975:2	0/1:0,47:33:47:1.00:2	0/1:43,28:33:71:0.394:2	0/1:0,43:33:43:1.00:2	0/1:1,50:32:51:0.980:2	0/1:0,74:32:74:1.00:2
chr2	192283494	rs143293753	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:30:14:0.286:2	./.	./.	./.	./.	./.	0/1:3,6:29:9:0.667:2	./.
chr2	192701393	rs10167187	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,38:30:38:1.00:2	0/1:0,35:31:35:1.00:2	./.	0/1:0,40:31:40:1.00:2	0/1:0,41:30:41:1.00:2	0/1:30,25:30:55:0.455:2	0/1:31,29:31:60:0.483:2	0/1:39,20:31:59:0.339:2	0/1:0,77:32:77:1.00:2	0/1:21,24:31:45:0.533:2	0/1:39,34:31:73:0.466:2
chr2	192701407	rs61735649	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,13:33:43:0.302:2	./.	./.	./.
chr2	192711442	rs61735648	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,86:32:194:0.443:2	./.	./.	./.	./.
chr2	193044347	rs55693184	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,45:31:101:0.446:2	./.	./.	./.	./.	./.
chr2	196605581	rs187206738	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,16:29:31:0.516:2	./.	./.	./.	./.
chr2	196673533	rs13411834	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:32:42:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,59:33:59:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,69:33:69:1.00:2	0/1:0,65:32:65:1.00:2	0/1:1,76:33:77:0.987:2
chr2	196720705	rs16841018	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,29:33:29:1.00:2	./.	./.	0/1:12,7:30:19:0.368:2	./.
chr2	196729450	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:33:136:0.029:2	./.
chr2	196746551	rs371684985	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:34:180:0.022:2	./.	./.	./.	./.	./.
chr2	196749504	rs60214909	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,27:32:28:0.964:2	./.	./.	0/1:16,14:32:30:0.467:2	./.
chr2	196762426	.	G	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:34,22:31:56:0.393:2	0/1:35,18:32:53:0.340:2	./.	./.	0/1:34,28:31:62:0.452:2	./.	./.	./.	./.	./.	./.
chr2	196791276	rs1489802	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,26:33:27:0.963:2	0/1:0,24:32:24:1.00:2	0/1:0,6:32:6:1.00:2	0/1:2,56:32:58:0.966:2	0/1:2,27:32:29:0.931:2	0/1:24,19:32:43:0.442:2	./.	0/1:0,34:32:34:1.00:2	0/1:2,41:33:43:0.953:2	0/1:16,20:33:36:0.556:2	0/1:47,34:32:81:0.420:2
chr2	196822004	rs62623378	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,111:32:199:0.558:2	./.	./.	./.	./.	0/1:107,77:33:184:0.418:2
chr2	196825256	rs115124743	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,34:31:77:0.442:2	./.	./.	./.	./.	0/1:49,47:32:96:0.490:2
chr2	196825402	rs6719500	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,122:33:124:0.984:2	./.	./.	0/1:45,43:33:88:0.489:2	./.
chr2	196851911	rs10931715	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,35:31:35:1.00:2	0/1:30,20:31:50:0.400:2	./.	0/1:1,54:31:55:0.982:2	0/1:4,76:33:80:0.950:2	0/1:30,20:32:50:0.400:2	0/1:51,46:32:97:0.474:2
chr2	196866420	rs6434811	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:33:77:1.00:2	0/1:1,29:32:30:0.967:2	0/1:0,10:32:10:1.00:2	0/1:0,97:32:97:1.00:2	0/1:2,74:32:76:0.974:2	0/1:2,68:32:70:0.971:2	0/1:0,58:32:58:1.00:2	0/1:2,90:32:92:0.978:2	0/1:0,94:34:94:1.00:2	0/1:1,86:33:88:0.989:2	0/1:0,89:33:89:1.00:2
chr2	196889180	rs186738601	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:31:13:0.538:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	196892695	rs62203391	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:38,50:33:88:0.568:2	0/1:13,23:32:36:0.639:2	0/1:6,9:33:15:0.600:2	./.	0/1:0,43:31:43:1.00:2	./.	./.	./.	./.	./.	./.
chr2	196915991	rs10174065	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:33:41:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,36:33:36:1.00:2	0/1:1,27:32:28:0.964:2	0/1:20,19:32:39:0.487:2	./.	0/1:0,43:32:43:1.00:2	0/1:1,57:33:58:0.983:2	0/1:25,12:32:37:0.324:2	0/1:32,36:32:68:0.529:2
chr2	197004439	rs1054537	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:33:76:1.00:2	0/1:0,43:33:43:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,104:33:104:1.00:2	0/1:1,73:32:74:0.986:2	0/1:63,39:32:102:0.382:2	./.	0/1:1,112:32:113:0.991:2	0/1:1,133:33:134:0.993:2	0/1:45,27:33:72:0.375:2	0/1:70,84:33:154:0.545:2
chr2	197021276	rs10931726	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,54:32:55:0.982:2	0/1:1,41:32:43:0.976:2	0/1:0,4:32:4:1.00:2	0/1:0,66:33:66:1.00:2	0/1:2,40:31:42:0.952:2	0/1:47,29:32:76:0.382:2	./.	0/1:2,70:31:72:0.972:2	0/1:1,72:33:73:0.986:2	0/1:31,36:32:67:0.537:2	0/1:72,49:31:121:0.405:2
chr2	197021372	rs12478353	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,22:30:23:1.00:2	0/1:0,12:30:12:1.00:2	./.	0/1:1,29:28:30:0.967:2	0/1:0,11:28:11:1.00:2	0/1:22,10:28:32:0.313:2	./.	0/1:0,25:29:25:1.00:2	0/1:0,36:30:36:1.00:2	0/1:14,10:29:24:0.417:2	0/1:17,30:30:47:0.638:2
chr2	197080642	rs17310196	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,17:32:40:0.425:2	./.	./.	./.	./.	0/1:29,15:32:44:0.341:2	./.	./.
chr2	197118729	rs4850690	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:32:55:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,79:33:79:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,88:33:88:1.00:2
chr2	197172742	rs61752161	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,54:31:96:0.563:2	./.	./.	0/1:39,34:31:73:0.466:2
chr2	197183856	rs61744819	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,43:28:95:0.453:2	./.	./.	./.	./.	./.
chr2	197184321	rs1531111	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:33:82:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,137:33:137:1.00:2	0/1:0,136:32:136:1.00:2	0/1:0,132:32:132:1.00:2	0/1:0,100:32:100:1.00:2	0/1:64,91:32:155:0.587:2	0/1:2,126:33:128:0.984:2	0/1:1,125:32:126:0.992:2	0/1:0,139:32:139:1.00:2
chr2	197504545	rs1879128	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:31:47:1.00:2	0/1:0,44:31:44:1.00:2	0/1:6,7:33:13:0.538:2	0/1:49,51:31:100:0.510:2	0/1:40,37:32:77:0.481:2	./.	0/1:38,17:32:55:0.309:2	0/1:51,31:31:82:0.378:2	0/1:30,53:33:84:0.639:2	0/1:27,24:32:51:0.471:2	./.
chr2	197531465	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:32:171:0.024:2	./.
chr2	197541296	rs17271281	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,8:31:18:0.444:2	0/1:113,77:31:190:0.405:2	0/1:113,75:31:188:0.399:2	0/1:92,85:31:177:0.480:2	0/1:135,59:32:194:0.304:2	./.	0/1:123,71:32:194:0.366:2	0/1:118,67:32:185:0.362:2	0/1:0,179:32:179:1.00:2
chr2	197577448	rs80183667	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,101:29:177:0.574:2
chr2	197629320	rs61741430	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,40:32:72:0.556:2
chr2	197654052	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,4:30:75:0.053:2	./.	./.	./.	./.	./.	./.
chr2	197737259	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:32:98:0.041:2	./.	./.
chr2	197863698	rs17385301	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,19:31:36:0.528:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	197866470	rs12478175	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:32:26:1.00:2	0/1:0,18:32:18:1.00:2	0/1:1,6:32:7:0.857:2	0/1:1,44:31:45:0.978:2	0/1:0,17:31:17:1.00:2	./.	0/1:0,16:30:16:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,28:33:28:1.00:2	0/1:22,9:33:31:0.290:2	0/1:0,43:33:43:1.00:2
chr2	197872574	rs61752170	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,46:32:119:0.387:2
chr2	197890001	rs62185248	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,21:30:61:0.344:2	./.	0/1:36,27:31:63:0.429:2	0/1:47,43:31:90:0.478:2	./.	./.	./.
chr2	197986072	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,6:31:191:0.031:2	./.	./.	./.	./.
chr2	197990741	rs35338671	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,53:32:145:0.366:2	./.	./.	0/1:45,61:33:106:0.575:2	./.
chr2	198001319	rs3731569	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,12:29:22:0.545:2	./.	0/1:28,20:29:48:0.417:2	./.	0/1:38,14:30:52:0.269:2	0/1:23,24:30:47:0.511:2	./.
chr2	198175297	rs10931780	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,3:24:7:0.429:2	0/1:1,2:32:3:0.667:2	0/1:0,5:31:5:1.00:2	0/1:0,12:32:12:1.00:2	./.	0/1:0,11:32:11:1.00:2	0/1:3,17:31:20:0.850:2	./.	0/1:1,6:33:7:0.857:2	./.	./.
chr2	198257036	rs150226353	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,3:34:57:0.053:2	./.	./.	./.	./.	./.	./.
chr2	198257159	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:31:76:0.053:2	./.	./.	./.	./.	./.
chr2	198257795	rs4685	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:95,95:32:190:0.500:2	0/1:64,53:32:117:0.453:2	./.	0/1:82,108:33:190:0.568:2	0/1:3,184:31:187:0.984:2	0/1:5,184:32:189:0.974:2	0/1:4,187:32:191:0.979:2	0/1:2,184:32:186:0.989:2	0/1:87,95:33:182:0.522:2	0/1:0,184:32:184:1.00:2	0/1:0,184:32:186:1.00:2
chr2	198265486	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:32:76:0.053:2	./.	./.	./.	./.	./.
chr2	198265526	rs788018	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:48,48:33:96:0.500:2	0/1:30,26:32:56:0.464:2	./.	0/1:62,37:33:100:0.374:2	0/1:2,71:33:74:0.973:2	0/1:0,105:33:105:1.00:2	0/1:1,65:33:67:0.985:2	0/1:3,98:32:101:0.970:2	0/1:54,56:34:111:0.509:2	0/1:0,61:32:61:1.00:2	0/1:1,125:32:126:0.992:2
chr2	198283305	rs788023	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:65,50:30:115:0.435:2	0/1:31,31:33:62:0.500:2	./.	0/1:49,57:32:106:0.538:2	0/1:0,114:32:114:1.00:2	0/1:1,105:32:106:0.991:2	0/1:0,114:32:114:1.00:2	0/1:1,102:32:103:0.990:2	0/1:56,46:33:102:0.451:2	0/1:0,112:32:112:1.00:2	0/1:0,113:32:113:1.00:2
chr2	198283616	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:32:169:0.024:2	./.	./.	./.
chr2	198327314	rs3754822	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:35,19:33:54:0.352:2	0/1:16,18:32:34:0.529:2	./.	./.	0/1:27,20:31:47:0.426:2	0/1:32,31:31:63:0.492:2	0/1:36,19:32:55:0.345:2	./.	./.	./.	0/1:66,47:32:113:0.416:2
chr2	198338579	rs61745365	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,20:32:58:0.345:2	./.	./.	./.	./.	./.	./.
chr2	198338598	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:29:70:0.057:2	./.	./.	./.	./.
chr2	198351906	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:34:59:0.068:2	./.	./.
chr2	198353093	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,6:27:193:0.031:2	./.	./.	./.	./.	./.
chr2	198353095	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,6:31:195:0.031:2	./.	./.	./.	./.	./.
chr2	198353099	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,6:31:193:0.031:2	0/1:181,5:33:186:0.027:2	./.	./.	./.	./.
chr2	198358157	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:33:69:0.058:2	./.
chr2	198362018	rs8539	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,31:33:74:0.419:2	0/1:31,14:32:45:0.311:2	./.	0/1:47,37:32:84:0.440:2	0/1:0,44:32:44:1.00:2	0/1:0,75:32:75:1.00:2	0/1:3,62:32:65:0.954:2	0/1:1,66:32:67:0.985:2	0/1:53,44:33:97:0.454:2	0/1:1,67:32:68:0.985:2	0/1:2,106:33:108:0.981:2
chr2	198362090	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:32:134:0.030:2
chr2	198363406	rs200514123	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:111,4:33:115:0.035:2	./.	./.	0/1:117,7:33:124:0.056:2	0/1:71,4:32:75:0.053:2	0/1:107,4:30:111:0.036:2	0/1:93,6:33:99:0.061:2	0/1:129,6:32:135:0.044:2	0/1:124,5:32:129:0.039:2	0/1:134,4:33:138:0.029:2	./.
chr2	198363501	rs201599915	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:191,6:30:197:0.030:2	0/1:156,8:33:165:0.049:2	0/1:186,9:31:195:0.046:2	0/1:187,8:30:195:0.041:2	0/1:186,9:30:195:0.046:2	0/1:177,9:32:186:0.048:2	0/1:177,7:32:185:0.038:2	./.
chr2	198363504	rs1050347	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:79,73:32:152:0.480:2	0/1:50,51:32:101:0.505:2	./.	./.	0/1:114,57:31:171:0.333:2	0/1:122,68:32:190:0.358:2	0/1:109,84:32:193:0.435:2	./.	./.	./.	0/1:89,90:32:179:0.503:2
chr2	198400311	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:161,4:31:165:0.024:2	./.	./.	./.	./.	./.	./.
chr2	198400329	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:170,4:32:174:0.023:2	./.	./.	./.	./.	./.	./.
chr2	198405150	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,5:33:102:0.049:2	./.	./.	./.	./.	./.
chr2	198508951	rs10497806	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:102,84:32:186:0.452:2	0/1:69,60:32:129:0.465:2	./.	0/1:102,87:31:189:0.460:2	0/1:3,152:31:155:0.981:2	0/1:88,100:30:188:0.532:2	0/1:6,181:32:187:0.968:2	0/1:111,82:32:193:0.425:2	0/1:86,95:33:181:0.525:2	0/1:0,184:32:184:1.00:2	0/1:3,168:32:171:0.982:2
chr2	198572461	rs7592344	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,43:30:83:0.518:2	0/1:27,26:32:53:0.491:2	0/1:44,33:31:77:0.429:2	./.	./.	0/1:47,50:31:97:0.515:2
chr2	198948960	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:126,10:32:136:0.074:2	./.	./.	./.	./.	./.	./.	./.
chr2	198949344	rs113185553	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,49:28:94:0.521:2	./.	./.	./.	./.	./.	0/1:49,51:28:100:0.510:2
chr2	198950029	rs2228135	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,24:33:45:0.545:2	0/1:17,5:33:22:0.227:2	0/1:28,20:32:48:0.417:2	./.	./.	0/1:35,23:33:58:0.397:2
chr2	198950240	rs1064213	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,29:31:56:0.518:2	0/1:13,20:32:33:0.606:2	./.	0/1:26,25:31:51:0.490:2	0/1:0,38:29:38:1.00:2	./.	0/1:11,17:30:28:0.607:2	0/1:31,14:30:45:0.311:2	0/1:27,32:31:59:0.542:2	0/1:0,33:30:33:1.00:2	0/1:34,19:32:53:0.358:2
chr2	198950516	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:33:82:0.049:2	./.
chr2	200193432	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,3:33:62:0.048:2	./.	./.	./.	./.	./.	./.	./.
chr2	200213684	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:34:195:0.021:2
chr2	200776353	rs62178345	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:32:9:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.	0/1:0,13:30:13:1.00:2	./.	./.	./.	./.	0/1:9,4:33:13:0.308:2	0/1:2,2:35:4:0.500:2
chr2	200790356	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:32:114:0.035:2	./.	./.
chr2	200813044	rs191659363	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:25,22:32:47:0.468:2	0/1:24,7:32:31:0.226:2	./.	./.	0/1:23,16:31:39:0.410:2	./.	./.	./.	./.	./.	./.
chr2	201171060	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:101,3:36:104:0.029:2	./.	./.	./.	./.	./.	./.
chr2	201171129	rs74340199	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,37:32:103:0.359:2	./.	./.
chr2	201171191	rs10931898	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,33:30:68:0.485:2	0/1:25,21:31:46:0.457:2	./.	0/1:0,107:32:107:1.00:2	0/1:66,41:32:107:0.383:2	./.	0/1:77,46:32:123:0.374:2	0/1:57,47:33:104:0.452:2	0/1:0,80:33:80:1.00:2	0/1:46,31:31:77:0.403:2	0/1:61,27:32:88:0.307:2
chr2	201171207	rs12614621	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:38,33:31:71:0.465:2	0/1:28,23:33:51:0.451:2	./.	0/1:0,113:32:113:1.00:2	0/1:71,53:32:124:0.427:2	./.	0/1:86,49:32:137:0.363:2	0/1:56,50:32:106:0.472:2	0/1:0,93:33:93:1.00:2	0/1:51,37:32:88:0.420:2	0/1:58,29:33:87:0.333:2
chr2	201253956	rs842823	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:28:14:0.500:2	./.	./.	0/1:1,69:29:70:0.986:2	./.	./.	./.	./.	./.
chr2	201337667	rs6723687	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,30:34:86:0.349:2	./.	./.
chr2	201354935	rs3795969	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:32:13:0.462:2	./.	./.	0/1:42,42:32:84:0.500:2	./.	./.	0/1:33,47:33:80:0.588:2	0/1:0,60:31:60:1.00:2	0/1:24,27:31:51:0.529:2
chr2	201355106	rs13018579	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,30:30:57:0.526:2	0/1:1,94:30:96:0.989:2	./.	./.	0/1:28,33:29:61:0.541:2
chr2	201397724	rs1036533	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,45:32:118:0.381:2	./.	./.
chr2	201434573	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,5:27:108:0.046:2	./.	./.	./.
chr2	201436555	rs17448235	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,73:32:73:1.00:2	./.	./.	./.	./.	./.
chr2	201437048	rs17532665	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,65:32:66:0.985:2	./.	./.	./.	./.	./.
chr2	201437214	rs17532679	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,35:33:50:0.700:2	0/1:13,24:32:37:0.649:2	0/1:6,7:32:13:0.538:2	0/1:21,49:31:70:0.700:2	./.	./.	0/1:27,34:32:61:0.557:2	./.	./.	./.	0/1:2,76:32:78:0.974:2
chr2	201437328	rs35987478	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,11:32:27:0.407:2	0/1:14,9:31:23:0.391:2	./.	0/1:26,5:31:31:0.161:2	0/1:28,11:29:39:0.282:2	./.	0/1:13,14:31:27:0.519:2	./.	./.	0/1:18,7:31:25:0.280:2	./.
chr2	201437334	rs12052989	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,29:30:30:0.967:2	0/1:0,24:30:24:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,31:30:31:1.00:2	0/1:27,13:29:40:0.325:2	0/1:0,40:30:40:1.00:2	0/1:0,26:31:26:1.00:2	./.	0/1:32,20:31:52:0.385:2	0/1:0,25:31:25:1.00:2	0/1:0,66:31:66:1.00:2
chr2	201450887	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2
chr2	201468732	rs2293525	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:33:4:1.00:2	./.	./.	./.	./.	./.	0/1:23,15:34:38:0.395:2	0/1:23,12:32:35:0.343:2	./.
chr2	201485441	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:32:195:0.021:2	./.	./.
chr2	201507439	rs56199635	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:34:80:0.050:2	./.
chr2	201526330	rs55754655	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:31,43:33:74:0.581:2	0/1:24,22:32:46:0.478:2	0/1:6,11:33:17:0.647:2	./.	./.	./.	0/1:85,36:33:121:0.298:2	0/1:76,52:33:128:0.406:2	./.	./.	0/1:66,66:33:132:0.500:2
chr2	201526368	rs41270243	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:34,34:33:68:0.500:2	0/1:31,13:32:44:0.295:2	0/1:3,11:32:14:0.786:2	./.	./.	./.	0/1:73,35:32:108:0.324:2	0/1:57,37:32:94:0.394:2	./.	./.	0/1:66,50:32:116:0.431:2
chr2	201534389	rs3731722	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,67:30:120:0.558:2
chr2	201541621	rs11678615	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,80:31:181:0.442:2
chr2	201680418	rs200597625	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:32:133:0.030:2	./.	./.	./.
chr2	201682696	rs118194562	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	201683017	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:31:60:0.067:2	./.	./.	./.	0/1:46,4:33:50:0.080:2	./.
chr2	201686936	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:31,4:31:35:0.114:2	0/1:36,3:33:39:0.077:2	./.	./.	./.	./.	./.	0/1:70,4:34:74:0.054:2	./.	./.	./.
chr2	201722827	rs17383109	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,46:32:125:0.368:2	./.	./.
chr2	201724410	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,4:31:87:0.046:2	./.	./.	./.	./.	./.	./.
chr2	201736166	rs7562391	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:71,56:33:128:0.441:2	0/1:52,42:32:94:0.447:2	./.	./.	./.	./.	./.	0/1:95,73:32:168:0.435:2	./.	./.	0/1:73,86:33:159:0.541:2
chr2	201768238	rs7917	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:97,64:33:161:0.398:2	0/1:63,49:32:112:0.438:2	0/1:1,29:31:30:0.967:2	./.	0/1:105,72:31:177:0.407:2	./.	./.	0/1:112,87:31:199:0.437:2	0/1:110,86:32:196:0.439:2	./.	0/1:116,81:32:197:0.411:2
chr2	201785731	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:32:54:0.074:2	./.	./.	./.	./.	./.
chr2	201785837	rs2307362	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:18,17:31:35:0.486:2	0/1:14,7:31:21:0.333:2	0/1:2,5:29:7:0.714:2	./.	0/1:22,16:31:38:0.421:2	./.	./.	0/1:14,19:31:33:0.576:2	./.	./.	0/1:15,16:32:31:0.516:2
chr2	201806005	rs2307359	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,28:33:62:0.452:2	./.	./.
chr2	201846502	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,38:33:77:0.494:2	./.	./.
chr2	202005070	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,4:32:109:0.037:2	./.	./.	./.	./.	./.	./.	./.
chr2	202006096	rs10190751	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:52,37:31:89:0.416:2	0/1:41,27:32:68:0.397:2	0/1:0,9:31:9:1.00:2	./.	0/1:45,23:30:68:0.338:2	./.	./.	0/1:74,51:32:125:0.408:2	0/1:72,46:33:118:0.390:2	./.	0/1:89,54:32:143:0.378:2
chr2	202025621	rs1594	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,21:30:54:0.389:2	0/1:16,15:30:31:0.484:2	0/1:0,13:30:13:1.00:2	0/1:49,35:30:84:0.417:2	0/1:53,42:30:95:0.442:2	0/1:36,27:31:63:0.429:2	0/1:66,44:29:110:0.400:2	0/1:2,105:30:107:0.981:2	0/1:0,50:31:50:1.00:2	./.	0/1:1,63:30:64:0.984:2
chr2	202050677	rs3900115	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,25:30:45:0.556:2	0/1:21,20:29:41:0.488:2	0/1:0,6:30:6:1.00:2	0/1:35,31:30:66:0.470:2	0/1:27,21:29:48:0.438:2	0/1:20,26:29:46:0.565:2	0/1:29,24:30:54:0.453:2	0/1:3,58:29:61:0.951:2	0/1:0,50:31:50:1.00:2	./.	0/1:2,74:30:76:0.974:2
chr2	202068433	rs17860401	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:31:14:0.571:2	./.	./.	./.	./.	./.	0/1:71,56:33:128:0.441:2	./.	./.
chr2	202068480	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:34:104:0.038:2	./.
chr2	202074207	rs17860405	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,45:33:86:0.523:2
chr2	202082459	rs13006529	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,46:32:98:0.469:2	0/1:31,28:31:59:0.475:2	0/1:5,3:30:8:0.375:2	0/1:51,43:32:94:0.457:2	0/1:37,32:31:70:0.464:2	0/1:56,63:31:119:0.529:2	0/1:33,30:31:63:0.476:2	0/1:1,101:31:102:0.990:2	0/1:75,66:32:141:0.468:2	./.	0/1:0,128:32:128:1.00:2
chr2	202122995	rs3769823	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:32:43:1.00:2	0/1:0,47:32:47:1.00:2	0/1:1,9:34:10:0.900:2	0/1:28,28:33:56:0.500:2	0/1:0,39:31:39:1.00:2	0/1:47,31:31:78:0.397:2	0/1:0,35:32:35:1.00:2	0/1:0,92:33:92:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,79:32:79:1.00:2
chr2	202149589	rs1045485	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,54:31:84:0.643:2	0/1:71,49:32:120:0.408:2
chr2	202149696	rs1045487	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,31:33:63:0.492:2	./.
chr2	202154200	rs17468277	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,81:33:162:0.500:2	0/1:119,80:32:199:0.402:2
chr2	202212950	rs116547819	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:17,3:32:20:0.150:2	0/1:13,4:32:17:0.235:2	0/1:5,3:31:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	202215492	rs13014235	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:33:47:1.00:2	0/1:0,25:33:25:1.00:2	0/1:0,4:33:4:1.00:2	0/1:25,15:33:40:0.375:2	0/1:0,16:33:16:1.00:2	0/1:16,12:32:28:0.429:2	0/1:0,12:33:12:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,45:33:45:1.00:2	0/1:25,23:33:48:0.479:2	0/1:0,42:33:42:1.00:2
chr2	202245423	rs34594680	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,20:31:49:0.408:2	./.	./.	0/1:41,38:31:79:0.481:2	./.	./.	./.
chr2	202252539	rs2244438	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,63:29:129:0.488:2	./.	0/1:99,53:30:153:0.349:2	./.	./.	./.	0/1:74,48:30:122:0.393:2	./.
chr2	202260049	rs2256584	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:31:92:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,105:31:105:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,115:30:115:1.00:2	0/1:0,90:31:90:1.00:2	0/1:0,115:31:115:1.00:2	0/1:0,112:31:112:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,121:31:121:1.00:2
chr2	202264098	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,4:23:26:0.154:2	./.	./.	./.	./.
chr2	202264156	rs13022344	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:30:60:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,5:30:5:1.00:2	0/1:52,30:30:82:0.366:2	0/1:2,67:30:69:0.971:2	0/1:44,39:30:83:0.470:2	0/1:0,76:30:76:1.00:2	0/1:4,68:30:72:0.944:2	0/1:0,82:31:82:1.00:2	./.	0/1:1,72:31:73:0.986:2
chr2	202265826	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:32:53:0.075:2	./.	./.	./.
chr2	202334704	rs192324264	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:170,4:32:174:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr2	202337730	rs1019299	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,183:30:186:0.984:2	0/1:2,139:29:141:0.986:2	0/1:19,14:29:33:0.424:2	0/1:102,81:30:183:0.443:2	0/1:0,181:30:181:1.00:2	0/1:98,86:30:184:0.467:2	0/1:0,172:30:172:1.00:2	0/1:0,172:30:172:1.00:2	0/1:80,109:31:189:0.577:2	0/1:86,97:31:183:0.530:2	0/1:2,153:30:155:0.987:2
chr2	202340410	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:32:136:0.029:2	./.	./.
chr2	202340421	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:33:124:0.032:2	./.	./.
chr2	202340443	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:32:91:0.044:2	./.	./.
chr2	202342402	rs12990557	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,155:32:183:0.847:2	0/1:11,104:32:115:0.904:2	0/1:19,7:31:26:0.269:2	0/1:114,65:31:179:0.363:2	0/1:131,58:31:189:0.307:2	0/1:109,86:31:195:0.441:2	0/1:31,159:31:190:0.837:2	0/1:133,53:32:186:0.285:2	0/1:108,79:32:187:0.422:2	./.	0/1:17,168:32:185:0.908:2
chr2	202342456	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:158,14:33:172:0.081:2	./.	./.	./.	0/1:171,9:33:180:0.050:2	0/1:177,7:33:184:0.038:2	./.	./.	./.	./.	./.
chr2	202343106	rs143801737	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,6:31:135:0.044:2	./.	./.	./.	./.	./.
chr2	202343153	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,6:30:186:0.032:2	./.	./.	./.	./.	./.
chr2	202343187	rs200083822	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:167,20:32:187:0.107:2	0/1:157,15:30:172:0.087:2	./.	./.	./.	0/1:187,13:31:200:0.065:2	0/1:161,37:31:198:0.187:2	0/1:170,27:32:197:0.137:2	0/1:182,15:30:197:0.076:2	0/1:169,24:32:193:0.124:2	./.
chr2	202352363	rs34138250	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,15:33:38:0.395:2	./.
chr2	202410300	rs10804117	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:2,50:31:52:0.962:2	0/1:0,32:31:32:1.00:2	./.	./.	0/1:46,27:30:73:0.370:2	./.	0/1:0,40:31:40:1.00:2	0/1:44,32:31:76:0.421:2	0/1:55,31:32:86:0.360:2	./.	0/1:64,47:31:111:0.423:2
chr2	202430584	rs73991652	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,18:31:42:0.429:2	./.	./.	./.
chr2	202436684	rs55872838	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,33:33:81:0.407:2	./.	./.	./.
chr2	202469361	rs12474206	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:32:25:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,25:30:25:1.00:2
chr2	202490774	rs77570029	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:33:69:0.058:2	./.
chr2	202490812	rs73989521	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,61:32:129:0.473:2	./.	./.	./.
chr2	202494491	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:32:111:0.036:2	./.	./.	./.
chr2	202514354	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.	./.	./.	./.
chr2	202545608	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:31:109:0.037:2	./.
chr2	202557702	rs6725443	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,125:31:125:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,107:32:107:1.00:2	0/1:0,107:32:107:1.00:2	0/1:0,105:33:105:1.00:2	0/1:0,77:33:77:1.00:2	0/1:0,92:32:92:1.00:2
chr2	202563295	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:31:92:0.043:2	./.	./.	./.	./.	./.
chr2	202575821	rs3219168	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:32:23:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,20:30:20:1.00:2	0/1:1,21:32:22:0.955:2	0/1:12,8:32:20:0.400:2	0/1:0,31:33:31:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,26:32:26:1.00:2
chr2	202580514	rs34946105	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,90:32:175:0.514:2	0/1:60,64:32:124:0.516:2	./.	./.	./.	0/1:75,89:32:164:0.543:2	./.	./.	./.	0/1:83,108:32:191:0.565:2	./.
chr2	202598113	rs2276615	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,22:31:68:0.324:2	0/1:18,18:32:36:0.500:2	./.	0/1:0,74:29:74:1.00:2	0/1:27,13:30:40:0.325:2	0/1:38,19:30:57:0.333:2	0/1:1,36:30:37:0.973:2	./.	0/1:0,77:30:77:1.00:2	./.	0/1:72,45:30:117:0.385:2
chr2	202606499	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:33:79:0.051:2	./.	./.
chr2	202625615	rs3219156	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,136:31:136:1.00:2	0/1:0,86:31:86:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,170:31:170:1.00:2	0/1:0,148:30:148:1.00:2	0/1:0,169:30:169:1.00:2	0/1:2,133:31:135:0.985:2	0/1:1,182:31:183:0.995:2	0/1:0,156:31:156:1.00:2	0/1:2,146:31:148:0.986:2	0/1:0,177:31:177:1.00:2
chr2	202630513	rs10194619	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:59,48:32:108:0.449:2	0/1:32,21:32:53:0.396:2	0/1:0,27:32:27:1.00:2	./.	0/1:45,39:31:84:0.464:2	0/1:53,52:32:105:0.495:2	./.	0/1:75,48:32:123:0.390:2	./.	0/1:1,90:32:91:0.989:2	./.
chr2	202633582	rs3219153	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:36,23:31:59:0.390:2	0/1:12,12:32:24:0.500:2	0/1:0,8:32:8:1.00:2	./.	0/1:23,34:32:57:0.596:2	0/1:37,26:32:63:0.413:2	./.	0/1:35,29:31:64:0.453:2	./.	0/1:0,61:32:61:1.00:2	./.
chr2	202899481	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:31:38:0.079:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:32:38:0.079:2
chr2	202899499	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,3:33:50:0.060:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	202900348	rs148824946	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:33:133:0.030:2	./.	./.	./.
chr2	202900409	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:33:178:0.022:2	./.	./.	./.
chr2	202900826	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,4:29:102:0.039:2	./.	./.	./.	./.	./.	./.
chr2	202901235	rs13034206	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,10:28:35:0.286:2	./.	0/1:13,7:32:20:0.350:2	./.
chr2	202901279	rs13034579	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,12:31:39:0.308:2	./.	0/1:14,4:32:18:0.222:2	./.
chr2	202901388	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:31:68:0.059:2	./.	./.	./.	./.	./.
chr2	202939654	rs10221698	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:27,26:32:53:0.491:2	0/1:23,22:33:45:0.489:2	0/1:5,4:32:9:0.444:2	./.	0/1:0,77:32:77:1.00:2	0/1:0,52:32:52:1.00:2	0/1:32,35:32:67:0.522:2	0/1:64,41:32:105:0.390:2	./.	0/1:0,61:31:61:1.00:2	./.
chr2	202939790	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:33:87:0.046:2
chr2	202964380	rs2882486	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,50:31:95:0.526:2	0/1:19,34:32:53:0.642:2	0/1:0,12:32:12:1.00:2	0/1:60,52:32:112:0.464:2	0/1:73,54:31:127:0.425:2	./.	./.	0/1:1,151:31:152:0.993:2	./.	0/1:1,100:32:102:0.990:2	./.
chr2	202964517	rs10197514	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,23:32:35:0.657:2	0/1:0,31:31:31:1.00:2	0/1:27,17:30:44:0.386:2	./.	./.	./.	0/1:18,21:32:39:0.538:2
chr2	202974360	rs12615065	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:11,5:32:16:0.313:2	0/1:11,7:31:18:0.389:2	./.	0/1:16,9:32:25:0.360:2	./.	./.	./.	./.	0/1:28,13:32:41:0.317:2	./.	0/1:14,20:31:34:0.588:2
chr2	203019512	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,26:32:53:0.491:2	./.
chr2	203052895	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,4:29:39:0.103:2	./.	./.	./.	./.	./.
chr2	203052947	rs35468542	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,11:32:22:0.500:2	./.
chr2	203084762	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,4:32:100:0.040:2	./.	./.	0/1:171,4:33:175:0.023:2	./.	./.	./.
chr2	203103192	rs189758392	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,24:31:57:0.421:2	./.	./.	./.	./.
chr2	203139844	rs80282360	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:58,42:31:100:0.420:2	0/1:35,34:29:69:0.493:2	./.	0/1:47,38:30:85:0.447:2	0/1:37,27:29:64:0.422:2	./.	./.	0/1:39,32:29:71:0.451:2	./.	./.	./.
chr2	203155936	rs3731700	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,22:33:54:0.407:2	0/1:17,12:33:29:0.414:2	./.	0/1:29,34:33:63:0.540:2	0/1:13,10:33:23:0.435:2	./.	./.	0/1:48,22:33:70:0.314:2	./.	./.	./.
chr2	203168173	rs1054446	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,56:32:128:0.438:2	./.
chr2	203421199	rs1061157	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,14:30:31:0.452:2	0/1:12,6:31:18:0.333:2	./.	0/1:16,11:30:27:0.407:2	0/1:19,12:30:31:0.387:2	./.	./.	0/1:27,11:29:38:0.289:2	./.	./.	./.
chr2	203644285	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:31:119:0.034:2	./.	./.
chr2	203676480	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:32:68:0.059:2	./.	./.	./.	./.
chr2	203680632	rs149686236	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,15:33:33:0.455:2	./.	./.	./.	./.	./.	./.	./.
chr2	203765756	rs35212307	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,23:30:42:0.548:2	0/1:0,53:29:53:1.00:2	0/1:26,17:29:43:0.395:2	./.	./.	./.	./.
chr2	203817297	rs115268453	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,10:32:27:0.370:2	0/1:16,7:31:23:0.304:2	./.	./.	./.	./.	./.
chr2	203846817	rs72932557	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,30:30:61:0.492:2	0/1:2,70:30:72:0.972:2	0/1:47,31:31:78:0.397:2	./.	./.	./.	./.
chr2	203914678	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:32:109:0.037:2	./.	./.
chr2	203949202	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:34:142:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	203990789	rs72934556	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,69:32:151:0.457:2	0/1:1,142:32:143:0.993:2	0/1:78,59:33:137:0.431:2	./.	./.	./.	./.
chr2	204062061	rs4675323	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:29:61:1.00:2	0/1:0,42:28:42:1.00:2	0/1:0,5:28:5:1.00:2	0/1:0,72:29:72:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,74:29:74:1.00:2	0/1:0,66:29:66:1.00:2	0/1:0,104:29:104:1.00:2	0/1:0,72:30:72:1.00:2	0/1:1,67:29:68:0.985:2	0/1:0,97:28:97:1.00:2
chr2	204066437	rs201986939	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:32:98:0.041:2	./.	./.	./.
chr2	204111530	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:33:199:0.020:2	./.	./.
chr2	204116690	rs2043449	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,51:31:51:1.00:2
chr2	204131294	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,4:33:82:0.049:2	./.	./.	./.	./.	./.	./.
chr2	204154552	rs1048013	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:2,156:32:159:0.987:2	0/1:3,76:32:80:0.962:2	./.	0/1:77,57:31:134:0.425:2	./.	./.	0/1:80,59:32:139:0.424:2	0/1:0,132:31:132:1.00:2	0/1:0,172:32:172:1.00:2	0/1:0,94:31:96:1.00:2	0/1:3,188:32:191:0.984:2
chr2	204304214	rs2465520	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,42:30:72:0.583:2	./.	./.	./.	./.
chr2	204305093	rs3814365	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,47:27:47:1.00:2	0/1:0,23:28:23:1.00:2	./.	0/1:1,54:27:55:0.982:2	./.	./.	0/1:18,31:29:49:0.633:2	0/1:3,60:28:63:0.952:2	0/1:31,19:27:50:0.380:2	0/1:0,40:29:40:1.00:2	0/1:1,53:28:54:0.981:2
chr2	204305362	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,4:30:50:0.080:2	./.	./.	./.	./.	./.	./.	./.
chr2	204322298	rs2469953	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,37:33:38:0.974:2	0/1:0,9:33:9:1.00:2	./.	0/1:0,40:33:40:1.00:2	./.	./.	0/1:18,11:34:29:0.379:2	0/1:1,32:31:33:0.970:2	0/1:21,16:35:37:0.432:2	0/1:0,13:32:13:1.00:2	0/1:0,41:33:41:1.00:2
chr2	204354729	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,7:32:146:0.048:2
chr2	204591513	rs56087636	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,21:32:43:0.488:2	./.	./.	./.	./.
chr2	204732714	rs231775	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:98,83:33:181:0.459:2	0/1:53,25:33:78:0.321:2	0/1:17,15:33:32:0.469:2	./.	0/1:93,97:32:190:0.511:2	0/1:114,75:33:189:0.397:2	./.	./.	./.	./.	0/1:0,189:32:189:1.00:2
chr2	204735573	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:30:90:0.044:2	./.
chr2	204820684	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,4:33:46:0.087:2	./.	./.	./.	./.	./.	./.
chr2	204824283	rs10172036	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,37:32:73:0.507:2	0/1:31,16:32:47:0.340:2	./.	./.	./.	0/1:49,27:32:76:0.355:2	./.	./.	0/1:1,93:34:94:0.989:2	0/1:30,37:33:67:0.552:2	0/1:38,58:33:96:0.604:2
chr2	204824324	rs10183087	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,16:31:61:0.262:2	./.	./.	0/1:42,29:34:73:0.408:2	./.	./.
chr2	205829991	rs236843	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,30:32:77:0.390:2	0/1:29,22:33:51:0.431:2	0/1:0,13:32:13:1.00:2	0/1:46,43:33:89:0.483:2	0/1:36,26:32:62:0.419:2	0/1:35,28:32:63:0.444:2	0/1:39,35:33:74:0.473:2	0/1:47,47:32:94:0.500:2	0/1:51,42:33:93:0.452:2	0/1:0,70:32:70:1.00:2	0/1:0,75:32:75:1.00:2
chr2	205912403	rs1510765	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,13:29:36:0.361:2	0/1:15,14:28:29:0.483:2	./.	./.	0/1:0,28:30:28:1.00:2	0/1:33,31:30:64:0.484:2	./.	0/1:30,26:28:56:0.464:2	0/1:42,26:30:68:0.382:2	0/1:0,39:30:39:1.00:2	0/1:0,58:28:58:1.00:2
chr2	205969220	rs2289025	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,11:31:32:0.344:2	0/1:7,15:32:22:0.682:2	./.	0/1:23,15:31:38:0.395:2	0/1:19,12:31:31:0.387:2	0/1:0,29:31:29:1.00:2	0/1:10,9:31:19:0.474:2	0/1:1,27:31:28:0.964:2	0/1:20,27:32:47:0.574:2	0/1:0,24:31:24:1.00:2	0/1:0,27:32:27:1.00:2
chr2	205986321	rs2289023	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:40,26:33:66:0.394:2	0/1:25,15:32:40:0.375:2	./.	./.	0/1:24,21:32:45:0.467:2	0/1:44,13:31:57:0.228:2	./.	./.	./.	0/1:0,76:32:76:1.00:2	0/1:36,38:32:74:0.514:2
chr2	205986505	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,5:30:73:0.068:2	./.
chr2	205990353	rs2276676	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,7:31:15:0.467:2	0/1:28,47:32:75:0.627:2	./.	0/1:69,64:32:133:0.481:2	0/1:61,43:33:104:0.413:2	0/1:115,45:33:160:0.281:2	./.	./.	./.
chr2	206305156	rs10185378	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:66,57:31:123:0.463:2	0/1:43,28:32:71:0.394:2	./.	./.	./.	./.	0/1:79,66:31:145:0.455:2	./.	./.	./.	./.
chr2	206305262	rs61741390	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,42:31:108:0.389:2
chr2	206305364	rs200838968	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:39,6:22:45:0.133:2	./.	./.	./.	./.	./.	./.	0/1:48,10:13:58:0.172:2	./.	./.	0/1:48,13:21:61:0.213:2
chr2	206364737	rs10197347	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:28:10:1.00:2	0/1:37,42:29:79:0.532:2	./.	0/1:49,33:29:82:0.402:2	0/1:44,27:29:71:0.380:2	./.	0/1:39,35:31:74:0.473:2	./.	0/1:33,27:29:60:0.450:2
chr2	206418114	rs368688012	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:34:64:0.063:2	./.	./.
chr2	206480393	rs17682782	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,48:31:101:0.475:2	./.	0/1:41,29:30:70:0.414:2	./.
chr2	206581033	rs849541	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:58:1.00:2	0/1:0,22:33:22:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,93:31:93:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,95:31:95:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,76:33:76:1.00:2	0/1:0,41:33:41:1.00:2	0/1:1,66:32:67:0.985:2
chr2	206581049	rs35678298	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,66:31:66:1.00:2	./.	./.	./.
chr2	206590686	rs2228639	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,69:29:153:0.451:2	0/1:55,35:29:90:0.389:2	./.	./.	./.	./.	./.	./.	0/1:89,97:31:186:0.522:2	./.	./.
chr2	206592695	rs849526	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:31,24:30:55:0.436:2	0/1:23,7:29:30:0.233:2	0/1:0,7:31:7:1.00:2	./.	0/1:32,25:30:57:0.439:2	./.	0/1:0,66:30:66:1.00:2	0/1:0,92:30:92:1.00:2	0/1:0,74:30:74:1.00:2	0/1:25,30:30:55:0.545:2	0/1:42,41:28:83:0.494:2
chr2	206608039	rs849568	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,25:33:25:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,29:30:29:1.00:2
chr2	206610502	rs849563	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,34:28:81:0.420:2	./.	./.	0/1:42,31:30:73:0.425:2	./.	./.
chr2	206874339	rs817991	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:51,44:32:95:0.463:2	0/1:21,24:32:45:0.533:2	0/1:8,10:33:18:0.556:2	./.	0/1:45,54:32:99:0.545:2	./.	./.	0/1:0,101:32:101:1.00:2	./.	0/1:47,30:32:77:0.390:2	0/1:46,44:32:90:0.489:2
chr2	206911228	rs2909111	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:11,6:32:17:0.353:2	0/1:6,9:32:15:0.600:2	0/1:0,2:31:2:1.00:2	./.	0/1:5,8:31:13:0.615:2	./.	./.	0/1:0,23:31:23:1.00:2	./.	0/1:10,9:31:19:0.474:2	0/1:9,20:32:29:0.690:2
chr2	206921090	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2	./.
chr2	206921451	rs818009	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,85:33:86:0.988:2	0/1:0,48:32:48:1.00:2	./.	0/1:66,54:32:120:0.450:2	0/1:0,116:32:116:1.00:2	0/1:73,69:32:142:0.486:2	0/1:1,111:33:112:0.991:2	0/1:0,124:33:124:1.00:2	0/1:59,54:34:113:0.478:2	0/1:67,42:33:109:0.385:2	0/1:78,64:33:142:0.451:2
chr2	206921562	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:198:0.020:2	./.	./.	./.	./.
chr2	207006676	rs1801318	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,4:32:11:0.364:2	0/1:60,45:33:105:0.429:2	./.	0/1:38,35:31:73:0.479:2	./.	./.	0/1:54,48:33:102:0.471:2	0/1:41,33:32:74:0.446:2	0/1:41,39:32:80:0.488:2
chr2	207008763	rs1127566	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,30:32:48:0.625:2	0/1:13,15:32:28:0.536:2	./.	0/1:0,40:32:40:1.00:2	0/1:11,9:32:20:0.450:2	0/1:0,36:32:36:1.00:2	0/1:14,12:32:26:0.462:2	./.	0/1:21,24:33:45:0.533:2	0/1:21,13:31:34:0.382:2	0/1:31,24:31:55:0.436:2
chr2	207025367	rs367973620	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:32:135:0.030:2	./.	./.	./.	./.	./.
chr2	207026100	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:32:109:0.037:2	./.	./.
chr2	207026113	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:33:119:0.034:2	./.	./.
chr2	207026125	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:30:135:0.030:2	./.	./.
chr2	207026141	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:29:110:0.036:2
chr2	207041053	rs3732083	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:33:3:0.667:2	0/1:0,97:32:97:1.00:2	0/1:30,41:32:71:0.577:2	0/1:1,91:32:93:0.989:2	0/1:46,48:33:94:0.511:2	./.	0/1:38,32:32:70:0.457:2	0/1:52,39:32:91:0.429:2	0/1:62,62:32:124:0.500:2
chr2	207041441	rs3732082	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:31:5:0.800:2	0/1:39,21:30:60:0.350:2	./.	0/1:35,32:29:67:0.478:2	./.	./.	0/1:51,44:32:95:0.463:2	0/1:32,28:30:60:0.467:2	0/1:52,43:30:95:0.453:2
chr2	207169731	rs10932150	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:47,38:32:85:0.447:2	0/1:27,13:31:40:0.325:2	./.	./.	0/1:0,36:31:36:1.00:2	0/1:26,25:30:51:0.490:2	0/1:26,20:31:46:0.435:2	0/1:36,25:30:61:0.410:2	./.	./.	./.
chr2	207172627	rs7582864	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,64:33:64:1.00:2	0/1:1,38:33:39:0.974:2	./.	./.	0/1:2,56:32:58:0.966:2	0/1:1,51:32:52:0.981:2	0/1:0,45:32:45:1.00:2	0/1:37,45:32:82:0.549:2	./.	0/1:41,25:31:66:0.379:2	./.
chr2	207173390	rs79484112	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:31:16:0.563:2	./.	./.	./.	./.	./.	./.	0/1:6,6:32:12:0.500:2
chr2	207174316	rs3732084	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,25:32:26:0.962:2	0/1:0,16:33:16:1.00:2	./.	./.	0/1:0,20:32:20:1.00:2	0/1:3,40:31:43:0.930:2	0/1:0,16:33:16:1.00:2	0/1:24,20:31:44:0.455:2	./.	0/1:18,11:32:29:0.379:2	./.
chr2	207175070	rs138061259	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,44:31:97:0.454:2	./.	./.	./.	./.	./.	./.	0/1:68,36:31:104:0.346:2
chr2	207175177	rs149538903	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,12:33:40:0.300:2	./.	./.
chr2	207452797	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:31:137:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	207459463	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2	./.	./.	./.	./.	./.
chr2	207459467	rs3732079	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,87:32:194:0.448:2	./.	./.	0/1:114,80:34:194:0.412:2	./.	./.
chr2	207527840	rs2115591	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:4,178:32:183:0.978:2	0/1:5,184:32:189:0.974:2	0/1:37,19:31:56:0.339:2	./.	0/1:95,91:31:186:0.489:2	0/1:126,73:31:199:0.367:2	0/1:3,174:32:177:0.983:2	0/1:111,87:31:198:0.439:2	0/1:113,83:32:196:0.423:2	0/1:108,82:31:190:0.432:2	0/1:100,94:31:194:0.485:2
chr2	207569623	rs116768218	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,38:33:62:0.613:2	./.	./.
chr2	207570529	rs56067462	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:31:9:0.444:2	./.	./.	./.	0/1:2,43:30:45:0.956:2	./.	./.	./.	./.
chr2	207572133	rs67248530	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,84:29:169:0.497:2	./.	./.	0/1:66,64:29:130:0.492:2
chr2	207603221	rs2287632	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,38:33:103:0.369:2	0/1:43,41:32:84:0.488:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,72:33:176:0.409:2
chr2	207603234	rs2287631	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,85:32:86:0.988:2	0/1:0,75:32:75:1.00:2	./.	./.	./.	0/1:42,36:31:78:0.462:2	./.	./.	./.	./.	0/1:102,66:33:168:0.393:2
chr2	207619779	rs59358632	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,46:29:83:0.561:2	0/1:22,24:28:46:0.522:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,50:28:99:0.505:2
chr2	207620138	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:32:156:0.026:2	./.	./.	./.
chr2	207621759	rs1990849	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:32:35:1.00:2	0/1:1,31:32:32:0.969:2	0/1:0,5:31:5:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,59:32:59:1.00:2
chr2	207631446	rs147727753	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,24:33:53:0.453:2	0/1:16,18:32:34:0.529:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	207631461	rs3762568	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,30:32:51:0.588:2	0/1:21,21:32:42:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,54:32:111:0.486:2
chr2	207820231	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:31:85:0.047:2	./.
chr2	207820276	rs13420911	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:47,33:32:80:0.413:2	0/1:18,15:31:33:0.455:2	./.	0/1:48,19:31:67:0.284:2	./.	./.	0/1:0,58:31:58:1.00:2	0/1:51,36:31:87:0.414:2	0/1:40,31:31:71:0.437:2	0/1:27,23:32:50:0.460:2	0/1:0,75:31:75:1.00:2
chr2	207824384	rs11903403	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:48,45:32:93:0.484:2	0/1:20,28:32:48:0.583:2	./.	0/1:53,67:32:120:0.558:2	./.	./.	0/1:1,94:32:95:0.989:2	0/1:66,53:32:119:0.445:2	0/1:70,65:33:135:0.481:2	0/1:58,38:32:96:0.396:2	0/1:1,169:32:170:0.994:2
chr2	207825656	rs13397039	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:53,45:33:98:0.459:2	0/1:26,27:30:53:0.509:2	./.	0/1:81,60:32:141:0.426:2	./.	./.	0/1:0,106:32:106:1.00:2	0/1:87,53:30:140:0.379:2	0/1:65,68:33:133:0.511:2	0/1:64,59:32:123:0.480:2	0/1:0,117:32:117:1.00:2
chr2	207827189	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:34:154:0.026:2	./.	./.
chr2	207827220	rs62617140	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,66:31:126:0.524:2	./.
chr2	207833983	rs7582305	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,49:28:122:0.402:2	0/1:23,20:28:43:0.465:2	0/1:8,3:34:11:0.273:2	0/1:89,72:29:161:0.447:2	./.	./.	0/1:0,142:29:142:1.00:2	./.	0/1:55,79:29:134:0.590:2	0/1:77,58:29:135:0.430:2	0/1:59,61:29:120:0.508:2
chr2	207953187	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:197:0.020:2	./.	./.	./.	./.	./.
chr2	207988613	rs2700166	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,125:30:126:0.992:2	0/1:0,64:31:64:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,151:30:151:1.00:2	0/1:0,155:30:155:1.00:2	0/1:0,156:30:156:1.00:2	0/1:0,154:30:154:1.00:2	0/1:0,173:30:173:1.00:2	0/1:0,110:31:110:1.00:2	0/1:0,101:30:101:1.00:2	0/1:0,141:30:141:1.00:2
chr2	208030273	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:30:48:0.083:2	./.	./.	./.	./.	./.
chr2	208030291	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:32:42:0.095:2	./.	./.	./.	./.	./.
chr2	208134114	rs116237969	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,5:32:15:0.333:2	./.	./.
chr2	208442334	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:32:114:0.035:2	./.	./.	./.
chr2	208477852	rs2551949	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,56:32:120:0.467:2	0/1:36,41:32:77:0.532:2	0/1:0,12:31:12:1.00:2	0/1:78,50:32:128:0.391:2	0/1:61,44:31:105:0.419:2	0/1:2,142:31:144:0.986:2	0/1:0,86:31:86:1.00:2	0/1:82,83:32:165:0.503:2	0/1:75,67:32:142:0.472:2	0/1:0,108:32:108:1.00:2	0/1:0,189:32:189:1.00:2
chr2	208477956	rs2709416	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,37:31:57:0.649:2	0/1:18,14:32:32:0.438:2	0/1:0,5:31:5:1.00:2	0/1:35,23:31:58:0.397:2	0/1:21,26:31:47:0.553:2	0/1:0,51:31:51:1.00:2	0/1:1,49:31:50:0.980:2	0/1:29,27:31:56:0.482:2	0/1:34,35:32:69:0.507:2	0/1:0,43:30:43:1.00:2	0/1:0,69:31:69:1.00:2
chr2	208478055	rs17520056	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,22:33:46:0.478:2	0/1:14,11:33:25:0.440:2	./.	0/1:14,25:32:39:0.641:2	0/1:22,12:32:34:0.353:2	0/1:7,15:33:22:0.682:2	./.	./.	0/1:23,15:34:38:0.395:2	./.	0/1:31,24:32:55:0.436:2
chr2	208589572	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,5:31:178:0.028:2	0/1:186,4:33:190:0.021:2
chr2	208589594	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,5:28:155:0.032:2	./.
chr2	208589601	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,5:32:145:0.034:2	./.
chr2	208632817	rs35994626	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,41:32:90:0.456:2	./.	./.	./.
chr2	208633233	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:33:156:0.026:2	./.	./.	./.
chr2	208633413	rs4675711	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,4:32:4:1.00:2	./.	./.	0/1:0,3:33:3:1.00:2	0/1:0,4:31:4:1.00:2	./.	0/1:0,5:30:5:1.00:2	./.	./.	./.	0/1:0,2:30:2:1.00:2
chr2	208633627	rs55717133	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,18:32:30:0.600:2	0/1:15,12:32:27:0.444:2	./.	0/1:17,7:31:24:0.292:2	0/1:4,4:33:8:0.500:2	./.	./.	./.	0/1:0,34:32:34:1.00:2	./.	0/1:20,19:32:39:0.487:2
chr2	208811097	rs10932215	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:32:31:1.00:2	0/1:0,17:32:17:1.00:2	0/1:3,7:31:10:0.700:2	0/1:29,27:31:56:0.482:2	0/1:29,11:30:40:0.275:2	0/1:0,52:31:52:1.00:2	0/1:20,21:32:41:0.512:2	0/1:33,24:31:57:0.421:2	0/1:0,39:32:39:1.00:2	0/1:0,42:32:42:1.00:2	0/1:49,12:33:61:0.197:2
chr2	208841964	rs4441448	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,55:28:106:0.519:2	0/1:46,35:27:81:0.432:2	./.	0/1:0,116:28:116:1.00:2	0/1:0,136:28:136:1.00:2	0/1:1,140:28:142:0.993:2	0/1:68,72:28:140:0.514:2	0/1:98,90:28:188:0.479:2	0/1:68,76:29:144:0.528:2	0/1:0,106:29:106:1.00:2	0/1:71,58:27:129:0.450:2
chr2	208842276	rs115156379	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,10:30:18:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	208986637	rs2305430	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:32:30:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,19:33:19:1.00:2	0/1:0,47:31:47:1.00:2
chr2	208988907	rs150857132	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:31:57:0.070:2
chr2	208988958	rs140206746	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,15:32:33:0.455:2	./.	./.
chr2	208989037	rs2242074	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,16:31:42:0.381:2	0/1:21,22:29:43:0.512:2	0/1:11,5:29:16:0.313:2	0/1:47,38:29:85:0.447:2	0/1:1,71:28:72:0.986:2	0/1:0,91:30:91:1.00:2	0/1:61,34:29:95:0.358:2	0/1:0,80:29:80:1.00:2	0/1:0,60:30:60:1.00:2	0/1:46,30:30:76:0.395:2	0/1:31,17:30:48:0.354:2
chr2	208989169	rs113206037	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,7:31:10:0.700:2	0/1:2,4:34:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	208992957	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:30:71:0.056:2	./.	./.	./.	./.	./.
chr2	209007559	rs796287	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,157:32:157:1.00:2	0/1:0,84:32:84:1.00:2	0/1:15,15:33:30:0.500:2	0/1:1,163:33:164:0.994:2	0/1:2,147:32:149:0.987:2	0/1:2,167:32:169:0.988:2	0/1:93,68:33:161:0.422:2	0/1:0,161:33:161:1.00:2	0/1:2,166:34:168:0.988:2	0/1:87,75:33:162:0.463:2	0/1:0,164:32:164:1.00:2
chr2	209010558	rs2854723	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,40:27:40:1.00:2	0/1:1,17:29:18:0.944:2	./.	0/1:27,30:28:57:0.526:2	0/1:0,47:28:47:1.00:2	0/1:1,50:27:51:0.980:2	0/1:19,38:29:57:0.667:2	0/1:0,69:28:69:1.00:2	0/1:0,52:29:52:1.00:2	0/1:25,16:28:41:0.390:2	0/1:1,36:28:37:0.973:2
chr2	209010823	rs184047772	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,27:29:87:0.310:2	0/1:90,30:30:120:0.250:2	./.	./.	0/1:70,40:31:110:0.364:2	./.	./.
chr2	209010824	rs188633178	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,27:30:86:0.314:2	0/1:93,30:30:123:0.244:2	./.	./.	0/1:72,40:31:112:0.357:2	./.	./.
chr2	209010825	rs192997184	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,27:30:85:0.318:2	0/1:92,30:31:122:0.246:2	./.	./.	0/1:72,40:32:112:0.357:2	./.	./.
chr2	209030572	rs6721025	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,22:30:33:0.667:2	0/1:9,12:30:21:0.571:2	0/1:1,4:29:5:0.800:2	0/1:0,34:30:34:1.00:2	0/1:20,13:31:33:0.394:2	0/1:0,40:30:40:1.00:2	0/1:21,8:30:29:0.276:2	0/1:0,39:30:39:1.00:2	0/1:0,52:31:52:1.00:2	0/1:14,15:32:29:0.517:2	0/1:32,22:31:54:0.407:2
chr2	209030578	rs796281	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,20:32:29:0.690:2	./.	./.	0/1:14,14:32:28:0.500:2	./.
chr2	209036712	rs10804166	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,133:33:133:1.00:2	0/1:0,50:32:50:1.00:2	0/1:13,8:33:21:0.381:2	0/1:0,118:33:118:1.00:2	0/1:54,57:32:111:0.514:2	0/1:2,122:32:124:0.984:2	0/1:0,147:32:147:1.00:2	0/1:0,142:32:142:1.00:2	0/1:0,144:33:144:1.00:2	0/1:0,126:32:126:1.00:2	0/1:0,154:32:154:1.00:2
chr2	209036778	rs6435421	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:30:96:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,106:30:106:1.00:2	0/1:0,76:30:76:1.00:2	0/1:0,111:30:111:1.00:2	0/1:0,86:30:86:1.00:2	0/1:1,113:30:114:0.991:2	0/1:0,110:31:110:1.00:2	0/1:0,111:30:111:1.00:2	0/1:0,129:29:129:1.00:2
chr2	209108317	rs34218846	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,24:30:47:0.511:2	./.
chr2	209113192	rs11554137	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,75:29:167:0.449:2	./.
chr2	209179939	rs16840913	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,54:30:118:0.458:2	./.	./.	./.
chr2	209184980	rs10932258	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:32:74:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,76:31:76:1.00:2	0/1:0,97:32:97:1.00:2
chr2	209184999	rs10932259	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,79:33:79:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,111:33:111:1.00:2
chr2	209189694	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,4:32:107:0.037:2	./.	./.	./.	./.	./.	./.	./.
chr2	209190330	rs2363468	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:29:49:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,57:29:57:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,58:28:58:1.00:2	0/1:0,44:30:44:1.00:2	0/1:0,62:28:62:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,68:30:68:1.00:2
chr2	209190519	rs893254	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:32:42:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,44:32:44:1.00:2
chr2	209190528	rs893253	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,42:33:42:1.00:2
chr2	209190632	rs999890	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,32:28:66:0.485:2	./.	0/1:33,19:28:52:0.365:2	./.
chr2	209190649	rs999891	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,39:33:80:0.488:2	./.	0/1:34,27:32:61:0.443:2	./.
chr2	209191082	rs1529979	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,118:32:118:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,142:31:142:1.00:2	0/1:0,123:31:123:1.00:2	0/1:0,150:31:150:1.00:2	0/1:0,151:32:151:1.00:2	0/1:0,182:32:182:1.00:2	0/1:0,172:33:172:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,177:32:177:1.00:2
chr2	209191099	rs1529978	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,117:29:117:1.00:2	0/1:0,62:29:62:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,139:30:139:1.00:2	0/1:0,137:29:137:1.00:2	0/1:0,153:30:153:1.00:2	0/1:1,153:30:154:0.994:2	0/1:0,184:30:184:1.00:2	0/1:0,171:30:171:1.00:2	0/1:0,125:30:125:1.00:2	0/1:0,170:30:170:1.00:2
chr2	209207335	rs35784095	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,28:32:71:0.394:2	./.	./.
chr2	209209827	rs2304544	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,127:31:127:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,110:30:110:1.00:2	0/1:3,75:29:79:0.962:2	0/1:0,90:30:90:1.00:2	0/1:1,60:30:61:0.984:2	0/1:0,86:29:87:1.00:2	0/1:0,112:31:112:1.00:2	0/1:0,114:31:114:1.00:2	0/1:0,150:30:150:1.00:2
chr2	209212707	rs2304545	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,159:33:159:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,184:33:184:1.00:2	0/1:0,169:32:170:1.00:2	0/1:1,186:32:187:0.995:2	0/1:0,175:33:175:1.00:2	0/1:108,78:33:186:0.419:2	0/1:0,173:34:173:1.00:2	0/1:93,90:33:183:0.492:2	0/1:0,173:32:173:1.00:2
chr2	209214770	rs2118297	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,161:30:161:1.00:2	0/1:0,82:29:82:1.00:2	0/1:0,24:28:24:1.00:2	0/1:1,176:30:177:0.994:2	0/1:0,78:29:78:1.00:2	0/1:0,181:30:181:1.00:2	0/1:0,121:30:121:1.00:2	0/1:0,188:30:188:1.00:2	0/1:0,159:31:159:1.00:2	0/1:0,159:30:159:1.00:2	0/1:2,182:30:184:0.989:2
chr2	209215571	rs13020468	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,57:32:133:0.429:2	./.	./.	./.
chr2	209215586	rs994697	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:32:85:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,106:33:106:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,128:32:128:1.00:2	0/1:0,121:33:121:1.00:2	0/1:2,138:32:140:0.986:2	0/1:0,113:34:113:1.00:2	0/1:0,102:33:102:1.00:2	0/1:0,128:32:128:1.00:2
chr2	209215663	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:31:113:0.035:2	./.	./.	./.
chr2	209218868	rs150413712	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,29:32:64:0.453:2	./.	./.	./.
chr2	209353800	rs16841294	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,93:32:189:0.492:2	./.	0/1:70,70:32:140:0.500:2	./.
chr2	209358027	rs3820900	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,121:31:121:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,160:31:160:1.00:2	0/1:92,69:31:161:0.429:2	0/1:88,81:31:169:0.479:2	0/1:2,137:31:139:0.986:2	0/1:3,173:31:176:0.983:2	0/1:81,97:32:178:0.545:2	0/1:1,120:31:121:0.992:2	0/1:0,152:30:152:1.00:2
chr2	210545505	rs201319995	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,43:31:87:0.494:2	./.	./.	./.	./.	./.	./.
chr2	210559865	rs35927101	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,34:32:65:0.523:2	./.	./.	./.	./.	./.	./.
chr2	210561352	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:29:59:0.068:2	./.	./.
chr2	210636854	rs145528914	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:31:16:0.563:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	210637855	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:33:167:0.024:2
chr2	210705348	rs10178675	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,3:33:14:0.214:2	./.	./.	./.	0/1:81,67:32:148:0.453:2	./.	./.	./.	./.
chr2	210787018	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:130,4:31:134:0.030:2	./.	./.	./.	./.	./.	./.
chr2	210810599	rs10178327	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,45:29:95:0.474:2	0/1:92,47:28:140:0.338:2	./.	./.	./.
chr2	210810644	rs10202111	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,46:32:104:0.442:2	0/1:85,46:32:131:0.351:2	./.	./.	./.
chr2	210818971	rs16843977	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,31:31:75:0.413:2	0/1:48,44:29:92:0.478:2	./.	./.	./.
chr2	210843383	rs2075117	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:31:60:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,79:31:79:1.00:2	0/1:51,44:30:96:0.463:2	0/1:0,74:31:74:1.00:2	0/1:47,40:31:88:0.460:2	0/1:37,49:31:86:0.570:2	0/1:0,65:32:65:1.00:2	0/1:30,30:31:60:0.500:2	0/1:33,27:31:60:0.450:2
chr2	211060050	rs2286963	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,46:33:110:0.418:2	0/1:0,76:33:76:1.00:2	0/1:49,48:33:97:0.495:2
chr2	211074909	rs3764913	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,39:34:98:0.402:2	0/1:0,65:33:65:1.00:2	0/1:37,30:33:67:0.448:2
chr2	211085491	rs61731470	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,8:32:27:0.296:2
chr2	211342502	rs17552879	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:32:44:1.00:2	0/1:2,16:32:18:0.889:2	0/1:5,6:31:11:0.545:2	0/1:27,26:31:53:0.491:2	0/1:0,23:31:23:1.00:2	0/1:36,11:31:47:0.234:2	./.	0/1:2,47:31:49:0.959:2	0/1:0,58:32:59:1.00:2	0/1:0,52:32:52:1.00:2	0/1:50,29:32:79:0.367:2
chr2	211454890	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:186,5:32:191:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr2	211456637	rs1047883	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,27:30:55:0.491:2	./.	0/1:0,51:30:51:1.00:2	0/1:0,42:30:42:1.00:2	./.	./.	0/1:37,14:30:51:0.275:2	0/1:0,50:29:50:1.00:2
chr2	211456639	rs2229589	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,27:30:54:0.500:2	./.	0/1:0,51:32:51:1.00:2	0/1:0,42:31:42:1.00:2	./.	./.	0/1:37,13:30:50:0.260:2	0/1:0,51:31:51:1.00:2
chr2	211481257	rs2287599	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,36:33:71:0.507:2	0/1:34,29:32:63:0.460:2	0/1:2,51:31:53:0.962:2	0/1:0,40:32:40:1.00:2	./.	./.	0/1:32,29:33:61:0.475:2	0/1:0,56:32:56:1.00:2
chr2	211532934	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,8:30:37:0.216:2	./.	./.
chr2	211539650	rs140578009	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,62:32:150:0.413:2	./.	./.
chr2	211540507	rs1047891	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:57,47:31:105:0.452:2	0/1:29,30:30:59:0.508:2	0/1:5,6:32:11:0.545:2	./.	./.	0/1:64,66:31:130:0.508:2	0/1:71,97:31:168:0.577:2	0/1:99,86:31:185:0.465:2	./.	./.	./.
chr2	212251864	rs3748962	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,73:33:139:0.525:2	0/1:54,82:31:136:0.603:2	0/1:66,73:32:139:0.525:2	0/1:71,50:32:121:0.413:2	./.	./.	./.	./.
chr2	212288902	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:33:74:0.054:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	212530074	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:31:158:0.025:2
chr2	212566843	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,51:32:133:0.383:2	0/1:54,36:32:90:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	213403248	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,4:29:46:0.087:2	./.	./.	./.	./.	./.	./.	./.
chr2	214012508	rs6709554	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,79:31:159:0.497:2	./.	./.	0/1:63,59:31:122:0.484:2	0/1:67,56:32:123:0.455:2	./.	./.	0/1:86,60:32:147:0.411:2
chr2	214228792	rs12469417	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:32:71:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,27:32:27:1.00:2	0/1:1,53:32:54:0.981:2	0/1:0,70:33:70:1.00:2	0/1:55,36:32:91:0.396:2	0/1:0,121:32:121:1.00:2
chr2	214354714	rs10167688	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,33:31:69:0.478:2	./.
chr2	214727221	rs2042791	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,119:32:120:0.992:2	./.	0/1:34,48:32:82:0.585:2	./.	0/1:61,59:31:120:0.492:2	./.	0/1:42,57:32:99:0.576:2	0/1:51,55:32:106:0.519:2
chr2	214794743	rs12623569	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,12:32:12:1.00:2	./.	0/1:50,43:32:93:0.462:2	0/1:62,51:33:113:0.451:2	./.	0/1:88,69:32:157:0.439:2	0/1:85,69:33:154:0.448:2	0/1:59,58:32:117:0.496:2	./.
chr2	215617178	rs28997576	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,28:32:55:0.509:2	./.	./.
chr2	215632255	rs2070094	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:60,29:32:89:0.326:2	0/1:20,17:32:37:0.459:2	./.	./.	./.	./.	./.	0/1:88,54:30:142:0.380:2	0/1:1,111:32:112:0.991:2	0/1:52,38:32:90:0.422:2	0/1:0,103:32:104:1.00:2
chr2	215632256	rs113211432	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,28:32:89:0.315:2	0/1:20,17:32:37:0.459:2	0/1:0,7:29:7:1.00:2	0/1:63,58:28:121:0.479:2	0/1:92,42:28:134:0.313:2	0/1:67,54:28:121:0.446:2	0/1:71,66:29:137:0.482:2	0/1:88,54:31:142:0.380:2	0/1:0,112:33:112:1.00:2	0/1:50,39:31:89:0.438:2	0/1:0,104:32:104:1.00:2
chr2	215645464	rs2229571	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,103:33:105:0.981:2	0/1:0,50:32:50:1.00:2	./.	./.	./.	0/1:53,58:33:111:0.523:2	0/1:36,61:33:97:0.629:2	0/1:72,57:32:129:0.442:2	0/1:0,132:33:132:1.00:2	0/1:0,95:32:96:1.00:2	0/1:0,110:33:111:1.00:2
chr2	215645545	rs2070096	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,43:30:82:0.524:2	0/1:11,28:29:39:0.718:2	./.	./.	./.	./.	./.	./.
chr2	215645584	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,4:31:38:0.105:2	./.	./.	./.	./.	./.	./.
chr2	215645989	rs28997574	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,25:31:50:0.500:2	./.
chr2	215674224	rs1048108	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:3,7:30:10:0.700:2	./.	./.	./.	./.	./.	./.	0/1:2,7:30:9:0.778:2	0/1:8,4:31:12:0.333:2	./.	0/1:1,14:30:15:0.933:2
chr2	215798867	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:31:86:0.047:2	./.	./.	./.
chr2	215807702	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,4:33:72:0.056:2	./.	./.	./.	./.	./.	./.
chr2	215813331	rs726070	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,24:32:69:0.348:2	./.	./.	./.	./.	./.	./.	./.
chr2	215820013	rs10498027	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:69,71:32:140:0.507:2	0/1:57,43:32:100:0.430:2	0/1:11,14:32:25:0.560:2	./.	./.	./.	0/1:95,61:32:156:0.391:2	0/1:123,65:32:189:0.346:2	0/1:109,84:33:193:0.435:2	0/1:81,58:32:139:0.417:2	0/1:97,90:32:187:0.481:2
chr2	215839570	rs16853022	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,33:33:58:0.569:2	./.	./.	./.	./.
chr2	215840548	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,4:32:122:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr2	215845268	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:29:105:0.038:2	./.	./.	./.
chr2	215851303	rs34351934	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,34:32:65:0.523:2	0/1:1,41:32:42:0.976:2	./.	./.	0/1:24,32:33:56:0.571:2	0/1:21,33:33:54:0.611:2
chr2	215854156	rs71428357	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,39:32:81:0.481:2	0/1:37,30:33:67:0.448:2	./.	./.	0/1:40,47:33:87:0.540:2	./.
chr2	215854314	rs80181772	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,8:19:121:0.067:2
chr2	215865575	rs10498030	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,75:29:159:0.472:2	0/1:1,107:29:108:0.991:2	./.	./.	./.	./.	0/1:66,66:30:132:0.500:2	./.
chr2	215876166	rs7560008	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:30:53:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,44:30:44:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,23:30:24:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,51:30:51:1.00:2
chr2	215876371	rs10198064	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,61:29:124:0.492:2	0/1:5,114:29:119:0.958:2	./.	./.	./.	0/1:70,66:30:136:0.485:2
chr2	215882749	rs148979792	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,41:32:69:0.594:2
chr2	215891581	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:32:173:0.023:2
chr2	215901774	rs17501837	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,25:31:47:0.532:2	./.	0/1:18,11:31:29:0.379:2	./.	0/1:1,46:30:47:0.979:2	./.	./.	0/1:0,71:31:71:1.00:2
chr2	215910724	rs11890512	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,36:33:73:0.493:2	./.	./.	./.	./.	./.	./.	./.
chr2	216176824	rs28366035	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,6:30:6:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2
chr2	216190020	rs2372536	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:45,45:32:90:0.500:2	0/1:29,20:32:49:0.408:2	0/1:1,10:31:11:0.909:2	./.	./.	0/1:46,39:31:85:0.459:2	./.	0/1:45,46:31:91:0.505:2	0/1:51,54:33:105:0.514:2	0/1:48,31:32:80:0.392:2	./.
chr2	216211604	rs112288749	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,51:33:112:0.455:2	./.
chr2	216226709	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:33:120:0.033:2	./.	./.	./.
chr2	216229692	rs11651	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:26,23:30:49:0.469:2	0/1:19,24:29:43:0.558:2	0/1:0,11:29:11:1.00:2	./.	./.	0/1:49,61:30:110:0.555:2	./.	0/1:72,71:30:143:0.497:2	0/1:73,58:31:132:0.443:2	0/1:49,58:31:107:0.542:2	0/1:65,55:29:120:0.458:2
chr2	216235089	rs1250209	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:32:96:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,122:32:122:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,133:31:133:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,166:32:166:1.00:2	0/1:0,147:33:147:1.00:2	0/1:0,118:32:118:1.00:2	0/1:0,146:33:146:1.00:2
chr2	216236711	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,63:33:132:0.477:2	./.	./.
chr2	216236712	rs17449032	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,48:30:114:0.425:2	./.	./.	./.	./.	./.	./.	./.
chr2	216242917	rs1132741	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,14:32:35:0.400:2	0/1:10,15:31:25:0.600:2	./.	0/1:29,10:32:39:0.256:2	./.	0/1:39,16:31:56:0.291:2	0/1:24,12:32:36:0.333:2	0/1:21,25:30:46:0.543:2
chr2	216249587	rs13652	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,160:31:160:1.00:2	0/1:1,113:32:114:0.991:2	0/1:21,21:31:42:0.500:2	0/1:116,82:31:198:0.414:2	0/1:0,197:31:197:1.00:2	0/1:0,192:30:192:1.00:2	0/1:120,77:31:197:0.391:2	0/1:97,98:31:195:0.503:2	0/1:0,197:32:197:1.00:2	0/1:0,196:31:196:1.00:2	0/1:0,193:31:193:1.00:2
chr2	216251538	rs139078629	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,7:30:15:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	216256463	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:127,4:33:131:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr2	216269209	rs1053238	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,80:32:80:1.00:2	0/1:0,60:32:60:1.00:2	./.	./.	0/1:87,46:32:133:0.346:2	0/1:62,57:32:119:0.479:2	./.	./.	0/1:55,58:33:113:0.513:2	0/1:69,39:33:108:0.361:2	./.
chr2	216269254	rs7589580	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,79:32:79:1.00:2	0/1:0,54:32:54:1.00:2	./.	./.	0/1:80,41:32:121:0.339:2	0/1:73,56:32:129:0.434:2	./.	./.	0/1:51,55:32:106:0.519:2	0/1:68,40:31:108:0.370:2	./.
chr2	216271892	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:33:131:0.031:2	./.
chr2	216272020	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:136,4:31:140:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr2	216272900	rs2577301	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:32:63:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,3:32:3:1.00:2	0/1:1,44:32:45:0.978:2	0/1:0,34:32:34:1.00:2	0/1:0,58:33:58:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,55:32:55:1.00:2
chr2	216272907	rs7596677	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,23:31:45:0.511:2	0/1:18,17:30:35:0.486:2	0/1:30,16:30:46:0.348:2	0/1:29,27:30:56:0.482:2	./.	0/1:24,14:30:38:0.368:2	0/1:23,14:30:37:0.378:2	0/1:32,30:30:62:0.484:2
chr2	216286916	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:32:182:0.022:2	./.	./.	./.
chr2	216298084	rs2289202	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:31:11:0.455:2	./.	./.	./.	./.	0/1:91,77:32:170:0.458:2	./.	./.	0/1:67,60:32:127:0.472:2
chr2	216300482	rs1250259	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:33:3:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,46:31:46:1.00:2	0/1:16,20:31:36:0.556:2	0/1:0,25:32:25:1.00:2	0/1:0,32:32:32:1.00:2	0/1:22,4:31:26:0.154:2	0/1:10,8:31:18:0.444:2	0/1:1,20:32:21:0.952:2
chr2	216878008	rs1864253	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:30:5:1.00:2	0/1:36,35:29:71:0.493:2	0/1:36,36:29:72:0.500:2	0/1:0,67:29:67:1.00:2	0/1:27,20:30:47:0.426:2	0/1:41,33:29:74:0.446:2	0/1:32,14:31:46:0.304:2	0/1:0,44:29:44:1.00:2	0/1:3,15:29:18:0.833:2
chr2	216904019	rs9288513	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,11:31:38:0.289:2	./.
chr2	216908679	rs2303842	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:32:14:0.429:2	./.	./.	0/1:88,80:32:168:0.476:2	0/1:57,76:33:133:0.571:2	./.	./.	./.	./.
chr2	216916258	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:33:60:0.067:2	./.	./.	./.	./.
chr2	216923679	rs1429148	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,41:32:94:0.436:2	./.
chr2	216982452	rs28371548	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:56,39:32:95:0.411:2	0/1:30,21:33:51:0.412:2	./.	./.	0/1:90,65:32:155:0.419:2	./.	./.	./.	./.	./.	./.
chr2	217001831	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,12:30:196:0.061:2	./.
chr2	217012901	rs207906	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,36:29:83:0.434:2	0/1:30,22:30:52:0.423:2	0/1:4,5:29:9:0.556:2	0/1:0,93:30:93:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,93:30:93:1.00:2	0/1:41,29:30:70:0.414:2	0/1:61,47:30:108:0.435:2	0/1:0,106:31:106:1.00:2	0/1:0,81:31:81:1.00:2	0/1:56,63:30:119:0.529:2
chr2	217069876	rs2287561	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,75:30:194:0.387:2	0/1:96,84:29:180:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,71:29:195:0.364:2
chr2	217142568	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,4:30:60:0.067:2	./.	./.	./.	./.	./.	./.
chr2	217148417	rs876771	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,68:32:68:1.00:2	0/1:1,39:32:40:0.975:2	./.	./.	0/1:35,43:32:78:0.551:2	0/1:0,80:32:80:1.00:2	0/1:56,47:32:103:0.456:2	./.	0/1:46,35:34:81:0.432:2	./.	0/1:1,49:33:50:0.980:2
chr2	217279850	rs35907255	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,59:30:118:0.500:2	./.	./.	./.
chr2	217285104	rs2066522	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,59:32:113:0.522:2	./.	./.	./.	./.	./.	./.	./.
chr2	217315787	rs2066527	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,43:29:56:0.768:2
chr2	217342982	rs184390693	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,5:32:11:0.455:2	./.	./.	./.	./.	./.	./.
chr2	217363613	rs78831740	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,87:30:180:0.483:2	./.	./.	./.	./.	./.	./.	./.
chr2	217364013	rs137960636	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,21:30:53:0.396:2	./.	./.	./.
chr2	217541495	rs138757825	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,68:30:197:0.345:2	./.	./.	./.	./.	./.	./.
chr2	217541524	rs149264992	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,54:32:113:0.478:2
chr2	217541582	rs2160549	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,158:32:158:1.00:2	0/1:0,103:33:103:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,159:33:159:1.00:2	0/1:0,149:32:149:1.00:2	0/1:0,141:33:141:1.00:2	0/1:0,159:33:159:1.00:2	0/1:1,178:33:179:0.994:2	0/1:0,165:34:165:1.00:2	0/1:0,156:33:156:1.00:2	0/1:0,140:32:140:1.00:2
chr2	217559193	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:31:62:0.065:2	./.	./.	./.
chr2	217559421	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.
chr2	217559493	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	218669225	rs61741262	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:80,74:33:154:0.481:2	0/1:47,43:32:90:0.478:2	0/1:16,14:35:30:0.467:2	./.	./.	./.	0/1:103,88:34:192:0.461:2	0/1:81,108:33:189:0.571:2	0/1:109,81:34:190:0.426:2	./.	./.
chr2	218672782	rs34831382	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,91:32:186:0.489:2	./.	0/1:109,77:32:186:0.414:2	./.	./.	0/1:101,92:32:193:0.477:2
chr2	218674614	rs13417442	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,84:31:164:0.519:2	./.	0/1:64,82:32:146:0.562:2
chr2	218674697	rs918949	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,33:32:69:0.485:2	0/1:42,15:32:57:0.263:2	0/1:0,10:32:10:1.00:2	0/1:56,57:32:113:0.504:2	./.	0/1:36,34:31:70:0.486:2	0/1:3,83:32:86:0.965:2	0/1:0,110:32:110:1.00:2	0/1:0,82:33:82:1.00:2	./.	0/1:2,85:32:87:0.977:2
chr2	218682474	rs12694422	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:17,16:27:33:0.485:2	0/1:14,9:27:23:0.391:2	0/1:4,3:26:7:0.429:2	./.	./.	0/1:37,33:28:70:0.471:2	0/1:1,64:28:65:0.985:2	0/1:2,69:28:71:0.972:2	0/1:0,61:28:61:1.00:2	0/1:21,18:27:39:0.462:2	0/1:0,45:28:45:1.00:2
chr2	218682771	rs3796026	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:28,8:31:36:0.222:2	0/1:16,12:29:28:0.429:2	0/1:1,2:31:3:0.667:2	./.	./.	0/1:17,8:26:26:0.320:2	0/1:3,25:29:28:0.893:2	0/1:1,38:30:39:0.974:2	0/1:0,30:29:30:1.00:2	0/1:13,6:29:19:0.316:2	0/1:1,27:28:28:0.964:2
chr2	218683139	rs34291329	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,16:31:36:0.444:2	./.	0/1:18,9:30:27:0.333:2
chr2	218683154	rs2571445	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,15:28:26:0.577:2	0/1:9,10:29:19:0.526:2	0/1:0,4:30:4:1.00:2	0/1:23,20:29:43:0.465:2	./.	0/1:26,23:29:49:0.469:2	0/1:1,30:30:31:0.968:2	0/1:1,37:29:38:0.974:2	0/1:0,37:29:37:1.00:2	0/1:11,12:29:23:0.522:2	0/1:0,19:30:19:1.00:2
chr2	218683257	rs2571442	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,41:33:84:0.488:2	0/1:36,26:32:62:0.419:2	./.	./.	./.	0/1:78,52:32:130:0.400:2	0/1:5,88:31:93:0.946:2	0/1:0,125:32:125:1.00:2	0/1:1,117:33:118:0.992:2	0/1:50,29:32:80:0.367:2	0/1:0,79:32:79:1.00:2
chr2	218683294	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:33:105:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	218683368	rs34144104	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,51:32:102:0.500:2	0/1:23,17:32:40:0.425:2	./.	./.	./.	0/1:52,57:31:109:0.523:2	0/1:74,66:31:140:0.471:2	0/1:1,137:31:138:0.993:2	./.	0/1:43,41:31:84:0.488:2	0/1:48,54:30:102:0.529:2
chr2	218694551	rs16858298	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,73:30:137:0.533:2	0/1:39,42:29:81:0.519:2	./.	./.	./.	0/1:110,79:30:189:0.418:2	0/1:110,85:29:196:0.436:2	0/1:92,102:29:194:0.526:2	./.	0/1:68,86:30:154:0.558:2	0/1:106,67:29:173:0.387:2
chr2	218695102	rs3796028	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,12:32:35:0.343:2	0/1:8,7:31:15:0.467:2	./.	0/1:18,10:29:28:0.357:2	0/1:28,25:30:53:0.472:2	./.	./.	./.	./.	./.	./.
chr2	218712306	rs1004814	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,32:32:59:0.542:2	0/1:15,15:30:30:0.500:2	./.	./.	./.	0/1:29,31:32:60:0.517:2	./.	0/1:31,24:31:55:0.436:2
chr2	218712606	rs1364641	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,7:31:22:0.318:2	0/1:19,10:31:29:0.345:2	./.	0/1:34,5:33:39:0.128:2	./.	0/1:17,21:32:38:0.553:2	./.	0/1:15,9:30:24:0.375:2
chr2	218712726	rs1364642	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,28:32:62:0.452:2	0/1:33,22:31:55:0.400:2	./.	./.	./.	0/1:22,30:33:52:0.577:2	./.	0/1:29,26:32:55:0.473:2
chr2	218712918	rs3796031	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:32:4:0.750:2	0/1:24,17:30:41:0.415:2	0/1:22,19:30:41:0.463:2	0/1:21,32:30:53:0.604:2	./.	0/1:29,27:31:56:0.482:2	0/1:20,10:32:30:0.333:2	./.	0/1:0,29:31:29:1.00:2
chr2	218712936	rs3796032	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:29:5:0.600:2	0/1:30,18:29:48:0.375:2	0/1:21,20:28:41:0.488:2	./.	./.	./.	0/1:23,11:30:34:0.324:2	./.	0/1:17,15:31:32:0.469:2
chr2	218713282	rs3796033	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,11:31:24:0.458:2	0/1:92,62:31:154:0.403:2	0/1:61,63:31:125:0.508:2	./.	./.	./.	0/1:81,59:31:140:0.421:2	./.	0/1:53,46:31:99:0.465:2
chr2	218745685	rs10199795	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:30:49:1.00:2	0/1:0,22:32:22:1.00:2	0/1:2,3:32:5:0.600:2	0/1:0,76:32:76:1.00:2	0/1:47,53:32:100:0.530:2	0/1:0,71:32:71:1.00:2	0/1:4,88:32:92:0.957:2	0/1:53,27:31:80:0.338:2	0/1:0,78:32:78:1.00:2	0/1:40,28:32:68:0.412:2	0/1:18,26:32:44:0.591:2
chr2	218745717	rs138239490	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,28:30:70:0.400:2	./.	./.	0/1:18,15:30:33:0.455:2
chr2	218762616	rs41272679	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,89:30:194:0.459:2	./.	./.	./.	./.	0/1:93,63:30:156:0.404:2	./.
chr2	218940259	rs7423696	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,22:29:34:0.647:2	0/1:31,23:30:54:0.426:2	./.	./.	0/1:0,52:32:52:1.00:2	./.	./.
chr2	218940418	rs4674246	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,48:31:105:0.457:2	0/1:41,25:32:66:0.379:2	./.	./.	./.	0/1:89,91:31:180:0.506:2	./.	./.	./.	./.	./.
chr2	218940430	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:33:164:0.024:2	./.	./.
chr2	218947964	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,11:16:135:0.081:2	./.	./.	./.
chr2	218999695	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,5:29:191:0.026:2	./.	./.	./.	./.
chr2	218999698	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:31:195:0.026:2	./.	./.	./.	./.
chr2	218999794	rs200819332	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:177,5:30:182:0.027:2	./.	./.	./.	./.	./.	./.
chr2	218999917	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,4:32:86:0.047:2	./.	./.	./.	./.	./.	0/1:45,3:33:48:0.063:2	./.
chr2	219000001	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:31:92:0.043:2	./.	./.	./.	./.	./.
chr2	219000002	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.	./.	./.	./.	./.
chr2	219000292	rs11574750	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,41:31:94:0.436:2	./.	./.	./.	./.	./.
chr2	219000310	rs2230054	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,38:31:76:0.500:2	0/1:13,12:32:25:0.480:2	0/1:0,7:30:7:1.00:2	0/1:28,32:32:60:0.533:2	0/1:39,43:31:82:0.524:2	0/1:44,41:31:85:0.482:2	0/1:44,28:31:72:0.389:2	0/1:2,76:31:78:0.974:2	./.	0/1:29,41:31:70:0.586:2	0/1:22,25:32:47:0.532:2
chr2	219000378	rs201881186	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,3:35:74:0.041:2	./.
chr2	219000734	rs1126579	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,40:33:113:0.357:2	0/1:29,31:33:61:0.517:2	0/1:0,15:32:15:1.00:2	0/1:84,86:32:171:0.506:2	0/1:91,68:32:159:0.428:2	0/1:0,119:32:119:1.00:2	0/1:103,46:33:149:0.309:2	0/1:0,136:33:136:1.00:2	./.	0/1:86,55:32:141:0.390:2	0/1:69,73:33:142:0.514:2
chr2	219000962	rs17844765	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,41:31:78:0.532:2	./.	./.	./.	./.	./.
chr2	219000966	rs1126580	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,20:28:44:0.455:2	0/1:10,5:31:15:0.333:2	0/1:0,10:29:10:1.00:2	0/1:28,41:30:69:0.594:2	0/1:18,30:29:48:0.625:2	0/1:41,30:29:71:0.423:2	0/1:31,20:30:51:0.392:2	0/1:0,57:31:57:1.00:2	./.	0/1:32,22:31:54:0.407:2	0/1:48,35:31:83:0.422:2
chr2	219000992	rs11384701	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:16,8:20:24:0.333:2	./.	./.	./.	0/1:10,5:19:15:0.333:2	./.	./.	./.	./.	./.	./.
chr2	219001018	rs200622623	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,8:30:13:0.615:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	219001756	rs201967136	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,52:33:90:0.578:2	./.	./.	./.	./.	./.	./.
chr2	219029108	rs2234671	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:53,3:33:56:0.054:2	./.	./.	./.	0/1:93,69:31:162:0.426:2	./.	./.	./.	./.	0/1:113,4:32:117:0.034:2
chr2	219029553	rs5021150	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:33:118:0.034:2	./.	./.	./.
chr2	219029554	rs5021151	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:31:117:0.034:2	./.	./.	./.
chr2	219029932	rs55808468	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,11:30:21:0.524:2	./.	./.
chr2	219103403	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:33:137:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	219128506	rs2292549	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:32:45:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,76:32:76:1.00:2	0/1:2,84:32:86:0.977:2	0/1:0,76:32:76:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,74:32:74:1.00:2
chr2	219128580	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,5:33:14:0.357:2	./.	./.
chr2	219129252	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,40:30:76:0.526:2	0/1:24,15:31:39:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	219140288	rs2292550	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,13:30:13:1.00:2	0/1:64,48:30:112:0.429:2	0/1:65,46:30:111:0.414:2	0/1:61,31:30:92:0.337:2	0/1:79,44:30:123:0.358:2	0/1:2,135:30:137:0.985:2	./.	0/1:38,27:31:65:0.415:2	0/1:42,44:31:86:0.512:2
chr2	219143229	rs2292551	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:30:7:1.00:2	0/1:40,31:30:71:0.437:2	0/1:50,37:31:87:0.425:2	0/1:39,30:30:69:0.435:2	0/1:35,42:30:77:0.545:2	0/1:0,96:31:96:1.00:2	./.	0/1:42,28:31:70:0.400:2	0/1:44,23:31:67:0.343:2
chr2	219144089	rs12987180	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:31:5:1.00:2	0/1:29,21:32:50:0.420:2	0/1:23,27:32:50:0.540:2	0/1:18,19:32:37:0.514:2	0/1:19,34:32:53:0.642:2	0/1:2,47:31:49:0.959:2	./.	0/1:15,12:32:27:0.444:2	0/1:15,16:32:31:0.516:2
chr2	219144815	rs2045435	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:29:63:1.00:2	0/1:0,21:29:21:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,111:30:111:1.00:2	0/1:0,138:29:138:1.00:2	0/1:0,90:30:90:1.00:2	0/1:0,126:30:126:1.00:2	0/1:0,171:30:171:1.00:2	0/1:0,109:30:109:1.00:2	0/1:0,79:29:79:1.00:2	0/1:0,72:29:72:1.00:2
chr2	219146797	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,52:31:105:0.495:2	./.	./.	./.	./.	./.
chr2	219146803	rs2292553	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,52:32:53:0.981:2	0/1:0,33:32:33:1.00:2	./.	0/1:50,38:33:88:0.432:2	0/1:38,55:32:93:0.591:2	0/1:57,50:31:107:0.467:2	0/1:15,28:32:43:0.651:2	./.	0/1:0,80:32:80:1.00:2	0/1:28,40:31:68:0.588:2	0/1:39,43:30:82:0.524:2
chr2	219204600	rs202190131	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,10:15:21:0.476:2	./.	./.	./.	0/1:17,8:14:25:0.320:2	./.	./.	./.
chr2	219221846	rs4324314	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,22:32:49:0.449:2	./.	0/1:32,23:33:55:0.418:2	0/1:43,40:32:83:0.482:2	0/1:47,40:33:87:0.460:2	0/1:22,26:33:48:0.542:2	./.	0/1:13,30:34:43:0.698:2
chr2	219231807	rs3845833	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:31:45:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,62:31:63:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,86:30:86:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,61:32:61:1.00:2
chr2	219249013	rs2276631	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:30:7:0.571:2	0/1:47,34:31:81:0.420:2	0/1:33,41:31:74:0.554:2	0/1:21,31:31:52:0.596:2	./.	0/1:33,26:31:59:0.441:2	0/1:2,73:32:75:0.973:2	./.	0/1:47,48:31:96:0.505:2
chr2	219249077	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:32:56:0.071:2	./.	./.	./.	./.	./.
chr2	219252630	rs17221959	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,44:31:96:0.463:2	0/1:36,19:30:55:0.345:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	219254622	rs2695342	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,118:28:118:1.00:2	0/1:0,72:27:72:1.00:2	0/1:0,20:27:20:1.00:2	0/1:0,174:28:174:1.00:2	0/1:0,169:27:169:1.00:2	0/1:2,154:28:156:0.987:2	0/1:0,197:28:197:1.00:2	0/1:0,194:28:194:1.00:2	0/1:0,174:29:174:1.00:2	0/1:0,145:28:145:1.00:2	0/1:0,130:27:130:1.00:2
chr2	219266423	rs2227251	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,21:31:43:0.488:2	0/1:25,16:31:41:0.390:2	./.	0/1:60,4:33:64:0.063:2	0/1:36,25:32:61:0.410:2	./.	./.	./.	0/1:35,23:32:58:0.397:2	./.	0/1:20,20:32:41:0.500:2
chr2	219267781	rs2227255	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,10:31:18:0.556:2	0/1:76,90:30:166:0.542:2	0/1:95,100:30:195:0.513:2	0/1:0,195:30:195:1.00:2	0/1:4,192:31:196:0.980:2	0/1:0,195:30:195:1.00:2	0/1:79,82:31:161:0.509:2	0/1:1,114:32:115:0.991:2	0/1:78,79:31:157:0.503:2
chr2	219288523	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:31:106:0.038:2
chr2	219294599	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:119,4:32:123:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr2	219319657	rs6436058	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:30:49:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,48:29:48:1.00:2	0/1:0,47:28:47:1.00:2	0/1:0,58:30:58:1.00:2	0/1:0,99:30:99:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,63:30:63:1.00:2
chr2	219433715	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:167,10:17:178:0.056:2	./.	./.	0/1:153,20:12:174:0.116:2	./.	./.	./.
chr2	219492924	rs612874	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,3:28:12:0.250:2	0/1:0,85:28:85:1.00:2	0/1:27,34:28:61:0.557:2	0/1:60,51:28:111:0.459:2	0/1:0,94:29:94:1.00:2	0/1:56,57:29:113:0.504:2	0/1:0,118:29:118:1.00:2	0/1:0,82:29:82:1.00:2	0/1:50,39:28:89:0.438:2
chr2	219503113	rs1803383	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,5:32:178:0.028:2	./.	./.	./.
chr2	219507166	rs114603798	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,16:27:28:0.571:2	./.
chr2	219508372	rs3770213	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,39:32:40:0.975:2	0/1:0,23:32:23:1.00:2	./.	./.	0/1:18,17:31:35:0.486:2	0/1:26,13:31:39:0.333:2	./.	0/1:27,23:32:50:0.460:2	./.	./.	0/1:23,31:32:54:0.574:2
chr2	219508988	rs3770214	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,5:31:11:0.455:2	0/1:1,137:32:138:0.993:2	0/1:65,52:32:117:0.444:2	0/1:85,71:32:156:0.455:2	0/1:1,98:32:99:0.990:2	0/1:70,71:32:141:0.504:2	0/1:2,161:33:163:0.988:2	0/1:0,114:32:114:1.00:2	0/1:118,62:32:180:0.344:2
chr2	219509608	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:151,11:17:162:0.068:2	0/1:138,10:18:148:0.068:2	./.	./.	./.	./.	./.	./.
chr2	219509618	rs2230115	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,8:28:19:0.421:2	0/1:0,153:29:153:1.00:2	0/1:81,61:30:143:0.430:2	0/1:67,83:29:151:0.553:2	0/1:1,130:30:133:0.992:2	0/1:73,67:30:140:0.479:2	0/1:0,147:30:148:1.00:2	0/1:1,135:30:136:0.993:2	0/1:59,56:30:115:0.487:2
chr2	219513782	rs4674322	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,27:28:51:0.529:2	0/1:29,19:29:48:0.396:2	./.	0/1:13,35:30:48:0.729:2	./.	./.	0/1:31,19:30:50:0.380:2
chr2	219521110	rs61733649	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,35:32:56:0.625:2
chr2	219540127	rs148800637	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:33:18:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	219553423	rs45586733	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,66:29:141:0.468:2	0/1:50,46:28:96:0.479:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	219555262	rs1344642	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,37:33:38:0.974:2	0/1:0,25:33:25:1.00:2	./.	./.	0/1:33,22:33:55:0.400:2	0/1:14,21:32:35:0.600:2	./.	0/1:31,21:33:52:0.404:2	./.	./.	0/1:27,31:32:58:0.534:2
chr2	219558006	rs145980892	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,71:30:160:0.444:2	./.	./.
chr2	219562675	rs1863704	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,92:32:93:0.989:2	0/1:0,48:31:48:1.00:2	0/1:5,11:32:16:0.688:2	./.	0/1:65,49:31:114:0.430:2	0/1:94,57:31:151:0.377:2	./.	0/1:83,61:31:144:0.424:2	./.	./.	0/1:72,74:32:146:0.507:2
chr2	219562683	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:33:141:0.028:2
chr2	219602499	rs3731877	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,54:33:54:1.00:2	0/1:1,40:32:41:0.976:2	0/1:3,5:31:8:0.625:2	./.	0/1:30,26:32:56:0.464:2	0/1:38,29:31:67:0.433:2	./.	0/1:46,44:31:90:0.489:2	./.	./.	0/1:43,48:33:91:0.527:2
chr2	219602819	rs3731876	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,30:32:30:1.00:2	0/1:0,22:32:22:1.00:2	./.	./.	0/1:12,13:31:25:0.520:2	0/1:15,14:32:29:0.483:2	./.	0/1:18,13:32:31:0.419:2	./.	./.	0/1:15,19:32:34:0.559:2
chr2	219610433	rs586194	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,68:32:68:1.00:2	0/1:0,42:32:42:1.00:2	0/1:3,3:33:6:0.500:2	./.	0/1:40,31:32:71:0.437:2	0/1:46,46:32:92:0.500:2	./.	0/1:63,50:32:113:0.442:2	./.	./.	0/1:48,43:32:91:0.473:2
chr2	219617915	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,4:29:81:0.050:2	./.	./.	./.	./.	./.	./.	./.
chr2	219678877	rs41272687	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,42:32:81:0.519:2	./.	./.	./.	./.	./.	./.
chr2	219691801	rs33985460	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:32:15:0.400:2	./.	./.	./.	./.	./.	./.	0/1:55,50:32:105:0.476:2	./.
chr2	219736472	rs13417214	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,66:31:152:0.434:2	./.	./.	./.	./.	./.	./.	./.
chr2	219736532	rs143354443	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,81:32:179:0.453:2	./.	./.	./.
chr2	219826572	rs142258539	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:34:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	219878668	rs148224341	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,62:32:125:0.496:2	./.	./.	./.	./.
chr2	219883755	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,19:12:135:0.141:2	./.	./.	./.	./.	./.	./.	./.
chr2	219883763	.	C	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:90,13:19:103:0.126:2	./.	./.	./.	./.	./.	0/1:123,18:13:141:0.128:2	./.	0/1:166,14:14:180:0.078:2	0/1:101,19:13:120:0.158:2	0/1:126,21:13:147:0.143:2
chr2	219884332	rs145661891	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,90:32:174:0.517:2	./.	./.	./.	./.	./.
chr2	219892233	rs61749573	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,22:29:50:0.440:2	0/1:14,16:31:30:0.533:2	0/1:0,5:30:5:1.00:2	0/1:0,42:30:42:1.00:2	0/1:41,28:30:69:0.406:2	./.	./.	0/1:27,22:30:49:0.449:2	./.	./.	./.
chr2	219893096	.	T	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,12:16:117:0.103:2	0/1:113,13:15:127:0.103:2	0/1:112,17:20:129:0.132:2	0/1:121,17:17:138:0.123:2	0/1:120,11:20:131:0.084:2	0/1:123,16:16:139:0.115:2	./.	0/1:79,11:14:91:0.122:2
chr2	219895444	rs377478314	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:34:148:0.027:2	./.	./.
chr2	219895548	rs56411706	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,18:32:49:0.367:2	./.	./.	0/1:21,22:33:44:0.512:2
chr2	219895883	rs150728769	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,59:31:84:0.702:2	./.	./.	./.
chr2	219900068	rs17852959	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,16:32:24:0.667:2	./.	./.	0/1:38,24:32:62:0.387:2
chr2	219903258	rs6736922	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,44:32:92:0.478:2	0/1:40,23:32:63:0.365:2	0/1:0,15:32:15:1.00:2	0/1:0,129:32:129:1.00:2	0/1:0,95:31:95:1.00:2	./.	0/1:95,81:33:176:0.460:2	0/1:2,133:33:135:0.985:2	0/1:0,104:34:104:1.00:2	./.	0/1:50,47:32:98:0.485:2
chr2	219903723	rs4674354	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,31:31:68:0.456:2	0/1:21,19:30:40:0.475:2	0/1:0,8:30:8:1.00:2	0/1:1,51:30:52:0.981:2	0/1:0,18:29:18:1.00:2	./.	0/1:17,17:29:34:0.500:2	0/1:1,51:30:52:0.981:2	0/1:0,70:30:70:1.00:2	./.	0/1:44,29:29:73:0.397:2
chr2	219905247	rs3736403	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,78:33:192:0.406:2	./.	./.	0/1:108,84:33:192:0.438:2
chr2	219905296	rs72966102	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,7:29:26:0.269:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	219920037	rs394452	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,33:30:76:0.434:2	0/1:36,23:31:59:0.390:2	0/1:0,10:33:10:1.00:2	0/1:1,79:32:80:0.988:2	0/1:0,100:31:100:1.00:2	./.	0/1:0,81:32:81:1.00:2	0/1:0,83:31:83:1.00:2	0/1:0,60:32:60:1.00:2	0/1:50,24:32:74:0.324:2	0/1:48,42:32:91:0.467:2
chr2	219920412	rs3731881	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,23:33:49:0.469:2	0/1:22,9:33:31:0.290:2	0/1:0,20:33:20:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,107:32:107:1.00:2	./.	0/1:49,39:33:89:0.443:2	0/1:59,55:33:114:0.482:2	0/1:0,83:33:83:1.00:2	./.	./.
chr2	219920565	rs3731878	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:33:4:1.00:2	./.	./.	0/1:6,5:31:11:0.455:2
chr2	219941063	rs897477	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,18:30:36:0.500:2	0/1:11,13:32:24:0.542:2	0/1:0,5:30:5:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,36:30:36:1.00:2	./.	0/1:26,17:31:43:0.395:2	0/1:0,61:30:61:1.00:2	0/1:0,38:31:38:1.00:2	./.	0/1:27,30:31:57:0.526:2
chr2	220028245	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,4:29:95:0.042:2	./.	./.	./.	./.	./.	./.
chr2	220033830	rs3795986	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:33:35:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,59:31:59:1.00:2	./.	0/1:43,32:33:75:0.427:2	./.	0/1:33,41:34:74:0.554:2	0/1:36,26:32:62:0.419:2	./.
chr2	220037393	rs4674361	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,49:32:49:1.00:2
chr2	220037444	rs17655123	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,118:31:119:0.992:2	./.	./.	0/1:22,39:33:61:0.639:2
chr2	220037608	rs151183191	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,10:30:17:0.588:2	./.	./.
chr2	220037666	rs1127102	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:32:24:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,6:34:6:1.00:2	0/1:1,37:32:38:0.974:2	0/1:0,56:32:56:1.00:2	./.	./.	./.	0/1:32,10:32:42:0.238:2	0/1:13,15:33:28:0.536:2	./.
chr2	220037756	rs1043160	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:31:22:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,45:32:45:1.00:2	./.	./.	./.	0/1:20,9:34:29:0.310:2	0/1:12,4:34:16:0.250:2	./.
chr2	220040330	rs1127101	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,155:29:155:1.00:2	0/1:0,68:28:68:1.00:2	0/1:0,15:29:15:1.00:2	0/1:1,188:30:189:0.995:2	0/1:4,151:30:155:0.974:2	./.	./.	./.	0/1:115,73:30:188:0.388:2	0/1:93,93:29:186:0.500:2	./.
chr2	220045454	rs2293072	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,76:32:172:0.444:2	./.	./.	0/1:104,79:31:183:0.432:2	./.
chr2	220045902	rs2293073	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,28:32:53:0.528:2	./.	0/1:40,33:32:73:0.452:2
chr2	220046431	rs144808050	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,30:31:112:0.268:2	./.	./.	./.	./.	./.	./.
chr2	220046840	rs3210652	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,26:31:73:0.356:2	0/1:6,75:31:81:0.926:2	./.	./.	0/1:35,39:31:74:0.527:2
chr2	220046975	rs3731900	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:31:30:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,9:30:9:1.00:2	0/1:1,60:30:61:0.984:2	0/1:0,57:30:57:1.00:2	./.	./.	./.	0/1:29,31:31:60:0.517:2	0/1:20,22:30:42:0.524:2	./.
chr2	220072431	rs61750009	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,32:31:68:0.478:2	0/1:9,24:30:33:0.727:2	./.	./.	./.	./.	./.	./.	0/1:47,36:30:83:0.434:2	./.	./.
chr2	220073376	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,16:28:27:0.593:2	./.	./.	./.	./.
chr2	220078652	rs147445258	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,21:32:48:0.438:2	./.	./.	./.	./.	./.	./.	./.
chr2	220079130	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:31:170:0.024:2	./.
chr2	220080839	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,6:21:47:0.128:2	./.	./.
chr2	220081416	rs57467915	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,57:31:94:0.606:2	./.	./.	./.	./.	./.	./.	./.
chr2	220083279	rs1109866	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:31:51:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,112:31:112:1.00:2	0/1:3,75:30:79:0.962:2	0/1:0,92:30:92:1.00:2	./.	0/1:1,102:30:103:0.990:2	0/1:0,88:31:88:1.00:2	0/1:0,72:31:72:1.00:2	0/1:21,30:31:51:0.588:2
chr2	220085845	rs2276633	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:29:42:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,68:29:68:1.00:2	0/1:0,52:29:52:1.00:2	0/1:0,57:28:57:1.00:2	0/1:2,42:28:44:0.955:2	0/1:0,81:30:81:1.00:2	0/1:1,58:31:59:0.983:2	0/1:0,53:29:53:1.00:2	0/1:0,58:29:58:1.00:2
chr2	220087088	rs146429396	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,22:29:37:0.595:2	./.	./.	./.	./.	./.	./.
chr2	220087441	rs2276635	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,123:32:125:0.984:2	./.	./.	./.	./.
chr2	220100258	rs189875478	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,46:31:88:0.523:2	./.	./.	./.	0/1:34,30:32:64:0.469:2	./.
chr2	220100787	rs2293079	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,41:30:44:0.932:2	./.	./.	0/1:34,23:31:57:0.404:2
chr2	220103033	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:33:145:0.028:2	./.	./.	./.
chr2	220108300	rs11552796	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,145:33:148:0.980:2	./.	./.	./.	./.
chr2	220111285	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:31:163:0.025:2	./.	./.	./.	./.	./.
chr2	220113242	rs7601549	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:33:56:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,102:33:102:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,104:33:104:1.00:2	0/1:0,98:32:98:1.00:2	0/1:1,113:32:114:0.991:2	0/1:0,89:33:89:1.00:2	0/1:1,67:33:68:0.985:2	0/1:0,82:32:82:1.00:2
chr2	220115406	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,6:30:194:0.031:2	./.	./.	./.
chr2	220115422	rs147351423	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,6:32:199:0.030:2	./.	./.	./.
chr2	220115780	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:37,4:30:41:0.098:2	0/1:185,4:32:189:0.021:2	0/1:186,7:31:193:0.036:2	0/1:178,10:32:188:0.053:2	0/1:173,9:32:182:0.049:2	0/1:186,8:30:194:0.041:2	0/1:175,9:31:184:0.049:2	0/1:167,15:32:182:0.082:2	./.
chr2	220116412	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:31:115:0.035:2	./.	./.	./.
chr2	220117458	rs1024131	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,29:29:30:0.967:2	./.	./.	./.	./.
chr2	220118531	rs939574	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:32:75:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,118:32:118:1.00:2	0/1:1,106:31:107:0.991:2	0/1:0,152:31:152:1.00:2	./.	0/1:2,108:31:110:0.982:2	0/1:0,106:32:106:1.00:2	0/1:0,88:31:88:1.00:2	0/1:63,36:32:100:0.364:2
chr2	220149449	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:154,8:22:164:0.049:2	./.	./.	./.	./.	./.	./.
chr2	220161222	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:147,4:33:151:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr2	220162015	rs17847406	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,31:31:63:0.492:2	./.	./.	0/1:19,19:32:38:0.500:2
chr2	220162619	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:34:124:0.032:2	./.
chr2	220172576	rs7591986	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,40:32:98:0.408:2	./.	./.	0/1:53,40:33:93:0.430:2
chr2	220197321	rs2385405	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,48:30:48:1.00:2	0/1:0,77:31:77:1.00:2	./.	./.	0/1:0,47:30:47:1.00:2
chr2	220197388	rs2385404	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,60:28:60:1.00:2	0/1:0,84:29:84:1.00:2	./.	./.	0/1:0,36:29:36:1.00:2
chr2	220197424	rs2385403	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:37,3:32:40:0.075:2	./.	./.	./.	./.	./.	0/1:0,29:30:30:1.00:2	0/1:22,25:30:47:0.532:2	./.	./.	0/1:11,5:29:17:0.313:2
chr2	220250147	rs17856013	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:30:70:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,123:30:123:1.00:2	0/1:0,149:29:149:1.00:2	0/1:0,140:29:140:1.00:2	0/1:0,153:29:154:1.00:2	0/1:0,174:29:174:1.00:2	0/1:0,123:30:123:1.00:2	0/1:0,101:29:101:1.00:2	0/1:0,84:29:85:1.00:2
chr2	220250232	rs115897075	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,56:28:127:0.441:2	./.	./.	./.	./.	./.	./.
chr2	220283259	rs1318299	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	0/1:0,5:28:5:1.00:2	./.	0/1:1,4:28:5:0.800:2	./.	0/1:0,3:26:3:1.00:2	./.
chr2	220283277	rs2017800	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,3:32:3:1.00:2	0/1:0,2:34:2:1.00:2	0/1:0,2:34:2:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,4:33:4:1.00:2	0/1:1,9:32:10:0.900:2	0/1:0,2:34:2:1.00:2	0/1:0,7:33:7:1.00:2	./.
chr2	220283536	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:34:123:0.033:2	./.	./.
chr2	220283592	rs111828114	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,27:27:64:0.422:2	./.	./.	./.	./.	./.	./.	./.
chr2	220284876	rs41272699	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,46:31:129:0.357:2	./.	./.	./.	./.
chr2	220285002	rs75882680	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,39:27:76:0.513:2
chr2	220285309	rs1058261	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:47,38:30:86:0.447:2	0/1:34,28:31:62:0.452:2	./.	./.	0/1:91,92:29:183:0.503:2	./.	0/1:94,64:30:158:0.405:2	0/1:2,141:30:143:0.986:2	./.	./.	0/1:63,50:31:113:0.442:2
chr2	220285666	rs12920	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:12,19:33:31:0.613:2	0/1:16,11:32:27:0.407:2	./.	./.	0/1:38,32:31:70:0.457:2	./.	0/1:52,35:33:87:0.402:2	0/1:1,62:33:63:0.984:2	./.	./.	0/1:18,22:32:40:0.550:2
chr2	220286142	rs1058284	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:34,19:30:53:0.358:2	0/1:17,11:31:28:0.393:2	./.	./.	0/1:74,49:31:123:0.398:2	./.	0/1:59,65:31:124:0.524:2	0/1:1,99:31:100:0.990:2	./.	./.	0/1:36,24:30:60:0.400:2
chr2	220309685	rs55821435	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	220315970	rs10932806	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,20:31:40:0.500:2	0/1:15,12:32:27:0.444:2	./.	0/1:41,19:30:60:0.317:2	0/1:29,33:30:62:0.532:2	0/1:32,13:31:45:0.289:2	0/1:48,21:32:69:0.304:2	0/1:40,30:30:70:0.429:2	0/1:24,22:31:46:0.478:2	0/1:0,35:32:35:1.00:2	0/1:24,22:32:46:0.478:2
chr2	220330804	rs1567487	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,13:24:24:0.542:2	0/1:18,7:27:25:0.280:2	0/1:1,3:26:4:0.750:2	0/1:46,31:23:77:0.403:2	0/1:59,32:23:91:0.352:2	0/1:34,25:26:59:0.424:2	0/1:43,20:23:63:0.317:2	0/1:56,33:25:89:0.371:2	0/1:40,26:24:66:0.394:2	0/1:0,33:25:33:1.00:2	0/1:21,10:22:31:0.323:2
chr2	220333950	rs10167209	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:30:56:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,84:29:84:1.00:2	0/1:0,134:30:134:1.00:2	0/1:1,119:29:120:0.992:2	0/1:0,122:30:122:1.00:2	0/1:0,122:30:122:1.00:2	0/1:0,90:30:90:1.00:2	0/1:1,64:30:65:0.985:2	0/1:0,58:30:58:1.00:2
chr2	220342004	rs45519033	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:17,20:31:37:0.541:2	0/1:8,7:31:15:0.467:2	./.	0/1:34,24:30:58:0.414:2	./.	./.	./.	./.	./.	0/1:18,21:32:39:0.538:2	./.
chr2	220342509	rs200886963	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,7:19:69:0.101:2	./.	./.
chr2	220348751	rs10755037	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,14:31:26:0.538:2	0/1:22,17:31:39:0.436:2	0/1:17,12:32:29:0.414:2	0/1:15,11:30:26:0.423:2	0/1:0,25:32:25:1.00:2	0/1:15,10:33:25:0.400:2	0/1:9,10:30:19:0.526:2	0/1:11,8:32:19:0.421:2
chr2	220353013	rs875098	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,11:31:37:0.297:2	0/1:17,13:29:30:0.433:2	0/1:16,12:28:29:0.429:2	0/1:19,20:30:39:0.513:2	0/1:3,54:30:57:0.947:2	0/1:16,18:32:34:0.529:2	0/1:15,21:32:36:0.583:2	0/1:13,17:28:30:0.567:2
chr2	220353532	rs13026308	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,12:30:14:0.857:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	220354108	rs55760516	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,7:33:14:0.500:2	0/1:5,3:33:8:0.375:2	./.	0/1:1,16:31:17:0.941:2	0/1:4,7:31:11:0.636:2	0/1:3,8:32:11:0.727:2	0/1:5,4:33:9:0.444:2	0/1:2,10:31:12:0.833:2	0/1:6,6:31:12:0.500:2	0/1:0,7:33:7:1.00:2	0/1:8,7:29:16:0.467:2
chr2	220354177	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,4:23:25:0.167:2	./.	./.	./.	./.	./.	./.
chr2	220354365	rs56132883	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,13:30:33:0.394:2	0/1:12,12:30:24:0.500:2	0/1:9,24:30:33:0.727:2	0/1:11,16:31:27:0.593:2	0/1:0,21:31:21:1.00:2	0/1:14,15:33:29:0.517:2	0/1:18,16:31:34:0.471:2	0/1:15,5:29:20:0.250:2
chr2	220354542	rs55969678	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:15,21:32:36:0.583:2	0/1:12,17:32:29:0.586:2	./.	0/1:40,26:31:66:0.394:2	./.	./.	./.	./.	./.	0/1:24,27:32:51:0.529:2	./.
chr2	220355529	rs12464085	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,31:30:66:0.470:2	0/1:24,17:30:41:0.415:2	./.	0/1:2,85:29:88:0.977:2	0/1:75,39:28:114:0.342:2	0/1:61,30:28:92:0.330:2	0/1:72,55:29:127:0.433:2	0/1:0,121:28:121:1.00:2	0/1:61,44:29:105:0.419:2	0/1:0,58:29:58:1.00:2	0/1:47,45:28:92:0.489:2
chr2	220356520	rs12473286	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,21:32:53:0.396:2	0/1:19,20:32:39:0.513:2	0/1:24,13:33:37:0.351:2	0/1:13,28:33:41:0.683:2	0/1:0,47:32:47:1.00:2	0/1:10,20:35:30:0.667:2	0/1:19,12:34:31:0.387:2	0/1:8,11:33:19:0.579:2
chr2	220362557	rs12474050	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,26:31:57:0.456:2	0/1:27,20:31:47:0.426:2	./.	0/1:0,84:30:84:1.00:2	0/1:30,31:30:61:0.508:2	0/1:47,28:29:75:0.373:2	0/1:33,24:31:57:0.421:2	0/1:1,78:31:79:0.987:2	0/1:44,28:32:72:0.389:2	0/1:1,49:31:50:0.980:2	0/1:23,18:31:41:0.439:2
chr2	220362899	rs2029251	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:32:35:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,22:32:22:1.00:2
chr2	220371035	rs1046474	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,47:30:97:0.485:2	./.	0/1:67,62:30:129:0.481:2	./.	./.	0/1:27,29:29:56:0.518:2
chr2	220379560	rs3731909	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,7:32:15:0.467:2	0/1:5,6:30:11:0.545:2	./.	./.	0/1:12,9:31:21:0.429:2	0/1:8,10:31:18:0.556:2	0/1:11,8:33:19:0.421:2	0/1:8,9:25:17:0.529:2	0/1:12,12:32:24:0.500:2	./.	0/1:16,8:23:24:0.333:2
chr2	220399951	rs2276643	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,14:29:44:0.318:2	0/1:15,5:29:20:0.250:2	0/1:0,8:29:8:1.00:2	0/1:18,20:30:38:0.526:2	./.	./.	./.	./.	./.	0/1:14,11:29:25:0.440:2	./.
chr2	220402665	rs6436153	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:13,9:33:22:0.409:2	0/1:7,7:33:14:0.500:2	./.	0/1:8,14:33:22:0.636:2	./.	./.	./.	./.	./.	0/1:12,10:33:22:0.455:2	./.
chr2	220402671	rs11689281	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,13:32:27:0.481:2	0/1:8,7:32:15:0.467:2	./.	0/1:15,11:31:26:0.423:2	0/1:1,14:31:15:0.933:2	0/1:0,27:31:27:1.00:2	0/1:13,7:33:20:0.350:2	0/1:0,20:32:20:1.00:2	0/1:0,17:33:17:1.00:2	0/1:11,14:33:25:0.560:2	0/1:0,25:32:25:1.00:2
chr2	220402680	rs11695248	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,14:30:29:0.483:2	0/1:8,8:30:16:0.500:2	./.	0/1:16,14:30:30:0.467:2	0/1:0,18:29:18:1.00:2	0/1:0,30:28:30:1.00:2	0/1:13,12:30:25:0.480:2	0/1:1,23:30:24:0.958:2	0/1:0,20:30:20:1.00:2	0/1:9,15:28:24:0.625:2	0/1:0,29:30:29:1.00:2
chr2	220404381	rs1976616	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,97:31:97:1.00:2	0/1:0,58:30:58:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,56:30:56:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,64:30:64:1.00:2	0/1:0,77:30:77:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,83:31:83:1.00:2	0/1:1,74:31:75:0.987:2
chr2	220404648	rs1043833	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,59:29:124:0.476:2	0/1:42,26:31:68:0.382:2	0/1:0,31:30:31:1.00:2	0/1:95,93:29:188:0.495:2	./.	./.	0/1:84,77:29:161:0.478:2	./.	./.	0/1:64,55:29:119:0.462:2	./.
chr2	220404726	rs1043832	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,37:31:64:0.578:2	0/1:20,13:31:33:0.394:2	0/1:0,23:31:23:1.00:2	0/1:37,30:30:67:0.448:2	./.	./.	0/1:16,23:31:39:0.590:2	./.	./.	0/1:23,30:31:53:0.566:2	./.
chr2	220404914	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:32:40:0.100:2	./.
chr2	220405230	rs6436154	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,19:31:30:0.633:2	0/1:6,13:30:19:0.684:2	0/1:0,7:30:7:1.00:2	0/1:17,26:31:43:0.605:2	./.	./.	0/1:7,16:31:23:0.696:2	./.	./.	0/1:13,8:31:21:0.381:2	./.
chr2	220405321	rs6436155	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,13:26:13:1.00:2	0/1:0,5:27:5:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,4:28:4:1.00:2	0/1:0,12:28:12:1.00:2	0/1:0,13:27:13:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,7:27:7:1.00:2	0/1:0,13:28:13:1.00:2
chr2	220406722	rs3731912	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:32:16:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,4:33:4:1.00:2	0/1:1,13:33:14:0.929:2	0/1:0,34:32:34:1.00:2	0/1:0,23:32:23:1.00:2	0/1:8,10:32:18:0.556:2	0/1:0,19:32:19:1.00:2	0/1:0,13:34:13:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,4:32:4:1.00:2
chr2	220412256	rs8179770	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,98:32:98:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,25:34:25:1.00:2	0/1:0,176:33:176:1.00:2	0/1:0,187:32:187:1.00:2	0/1:0,180:32:180:1.00:2	0/1:0,185:32:185:1.00:2	0/1:0,185:33:185:1.00:2	0/1:0,157:33:157:1.00:2	0/1:0,145:33:145:1.00:2	0/1:0,111:32:111:1.00:2
chr2	220412282	rs145979116	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,83:32:186:0.446:2	0/1:84,102:31:186:0.548:2	./.	./.	./.
chr2	220412657	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:32:47:0.085:2	./.	./.	./.	./.	./.
chr2	220414016	rs6436156	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:30:86:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,13:28:13:1.00:2	0/1:0,98:30:98:1.00:2	0/1:0,119:31:119:1.00:2	0/1:0,116:30:116:1.00:2	0/1:0,110:30:110:1.00:2	0/1:0,131:31:131:1.00:2	0/1:0,129:31:129:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,119:31:119:1.00:2
chr2	220414019	rs13023533	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,28:30:93:0.301:2	0/1:14,29:29:43:0.674:2	0/1:2,11:29:13:0.846:2	0/1:61,41:30:102:0.402:2	./.	./.	0/1:61,52:30:113:0.460:2	./.	./.	0/1:38,29:29:67:0.433:2	./.
chr2	220417266	rs59332477	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,3:32:3:1.00:2	0/1:0,5:32:5:1.00:2	./.	0/1:0,4:30:4:1.00:2	./.	./.	0/1:2,4:29:6:0.667:2	./.	./.	./.	./.
chr2	220419236	rs10932813	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:30:70:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,14:28:14:1.00:2	0/1:0,158:31:158:1.00:2	0/1:0,164:30:164:1.00:2	0/1:0,144:30:144:1.00:2	0/1:0,151:30:151:1.00:2	0/1:0,177:30:177:1.00:2	0/1:0,95:31:95:1.00:2	0/1:0,89:30:89:1.00:2	0/1:0,86:30:86:1.00:2
chr2	220419339	rs10932814	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:29:75:1.00:2	0/1:0,53:28:53:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,154:29:154:1.00:2	0/1:0,149:28:149:1.00:2	0/1:0,145:29:145:1.00:2	0/1:0,154:28:154:1.00:2	0/1:0,152:28:152:1.00:2	0/1:0,117:30:117:1.00:2	0/1:2,105:29:107:0.981:2	0/1:0,76:28:76:1.00:2
chr2	220420785	rs3087971	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,92:31:138:0.667:2	./.	./.	./.	./.
chr2	220420956	rs10932816	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:26:59:1.00:2	0/1:0,29:26:29:1.00:2	0/1:0,17:28:17:1.00:2	0/1:0,93:26:93:1.00:2	0/1:0,134:26:134:1.00:2	0/1:0,113:27:113:1.00:2	0/1:0,134:27:135:1.00:2	0/1:2,134:27:136:0.985:2	0/1:0,85:28:85:1.00:2	0/1:0,57:26:57:1.00:2	0/1:0,84:26:84:1.00:2
chr2	220420990	rs183329050	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:32:197:0.020:2	./.	./.	./.
chr2	220421417	rs1983210	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,155:31:156:0.994:2	0/1:0,83:32:83:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,189:32:189:1.00:2	0/1:1,174:32:175:0.994:2	0/1:0,166:32:166:1.00:2	0/1:105,79:32:184:0.429:2	0/1:4,166:32:170:0.976:2	0/1:0,162:33:163:1.00:2	0/1:2,179:32:181:0.989:2	0/1:2,140:31:142:0.986:2
chr2	220422605	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,4:21:16:0.250:2	./.	./.	./.	./.	./.	./.
chr2	220422774	rs2278201	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,29:25:68:0.426:2	0/1:22,16:29:38:0.421:2	0/1:0,9:27:9:1.00:2	0/1:40,51:26:91:0.560:2	./.	./.	0/1:46,28:26:74:0.378:2	./.	./.	0/1:44,33:27:78:0.429:2	./.
chr2	220423030	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,4:31:26:0.154:2	./.
chr2	220427154	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,18:32:20:0.900:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	220427193	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,5:30:159:0.031:2	./.	./.	./.	./.
chr2	220427347	rs10804275	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,31:31:51:0.608:2	./.	./.	./.	./.
chr2	220427395	rs3183099	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,18:29:27:0.667:2	./.	./.	./.	./.
chr2	220430203	rs1039898	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:30:17:1.00:2	0/1:0,8:27:8:1.00:2	./.	0/1:0,23:31:23:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,18:29:18:1.00:2	0/1:7,9:30:16:0.563:2
chr2	220431631	rs1043537	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,87:32:185:0.470:2	0/1:4,169:32:173:0.977:2	./.	./.	0/1:47,69:32:116:0.595:2
chr2	220431802	rs115194510	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,57:31:129:0.442:2	./.	./.	./.	./.	./.
chr2	220432014	rs61732787	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,81:31:181:0.448:2	0/1:4,112:31:116:0.966:2	./.	./.	0/1:41,39:30:80:0.488:2
chr2	220432499	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:147,4:32:151:0.026:2	./.	./.	./.	./.	./.	./.
chr2	220435034	rs10180675	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,7:32:7:1.00:2	0/1:0,4:32:4:1.00:2	./.	0/1:0,9:33:9:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,6:34:6:1.00:2	0/1:0,12:31:12:1.00:2	./.
chr2	220439678	rs12720063	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,11:32:37:0.297:2	./.	./.	./.	./.
chr2	220439916	rs12720062	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,61:31:127:0.484:2	./.	./.	./.	./.	./.
chr2	220462640	rs681747	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,58:30:59:0.983:2	0/1:0,45:31:45:1.00:2	0/1:0,16:28:16:1.00:2	0/1:0,93:29:93:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,81:30:81:1.00:2	0/1:0,89:30:89:1.00:2	0/1:1,108:30:109:0.991:2	0/1:0,70:31:70:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,69:28:69:1.00:2
chr2	220466199	rs620698	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:31:75:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,7:31:7:1.00:2	0/1:1,81:31:82:0.988:2	0/1:1,112:31:113:0.991:2	0/1:0,107:30:107:1.00:2	0/1:0,88:31:89:1.00:2	0/1:0,133:31:133:1.00:2	0/1:0,107:32:108:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,121:31:121:1.00:2
chr2	220473355	rs673951	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,77:31:160:0.481:2	0/1:55,42:32:97:0.433:2	./.	./.	./.	0/1:2,181:31:183:0.989:2	./.	./.	0/1:107,83:32:190:0.437:2	0/1:1,141:31:142:0.993:2	./.
chr2	220473929	rs35240018	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,40:31:93:0.430:2
chr2	220476443	rs627530	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:31:75:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,76:30:76:1.00:2	0/1:0,69:30:69:1.00:2	0/1:1,72:30:73:0.986:2	0/1:0,81:31:81:1.00:2	0/1:0,84:30:84:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,63:31:63:1.00:2
chr2	220479232	rs200702532	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,4:32:99:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr2	220479312	rs624773	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,118:32:119:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,141:33:141:1.00:2	0/1:0,187:31:187:1.00:2	0/1:0,176:32:176:1.00:2	0/1:0,183:32:184:1.00:2	0/1:0,186:32:186:1.00:2	0/1:0,186:33:186:1.00:2	0/1:0,125:32:125:1.00:2	0/1:0,144:32:144:1.00:2
chr2	220494118	rs597306	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,9:32:9:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,2:30:2:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,12:31:12:1.00:2
chr2	220500423	rs589767	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:31:26:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,39:34:39:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,43:31:43:1.00:2
chr2	220500426	rs639214	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:27:26:1.00:2	0/1:0,14:27:14:1.00:2	0/1:0,9:27:9:1.00:2	0/1:0,42:28:42:1.00:2	0/1:0,34:28:34:1.00:2	0/1:0,41:27:41:1.00:2	0/1:0,20:27:20:1.00:2	0/1:0,26:28:26:1.00:2	0/1:0,38:28:38:1.00:2	0/1:0,22:28:22:1.00:2	0/1:0,43:26:43:1.00:2
chr2	220502367	rs635311	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,30:33:59:0.508:2	0/1:18,20:32:38:0.526:2	0/1:0,5:32:5:1.00:2	0/1:27,28:32:55:0.509:2	0/1:0,60:33:60:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,60:32:60:1.00:2	0/1:43,35:32:78:0.449:2	0/1:0,52:33:52:1.00:2	0/1:0,38:32:38:1.00:2	0/1:49,30:32:79:0.380:2
chr2	220504366	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:28:73:0.055:2	./.	./.	./.	./.
chr2	220505265	rs684428	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,48:32:113:0.425:2	0/1:28,33:32:61:0.541:2	0/1:0,27:33:27:1.00:2	0/1:84,80:32:164:0.488:2	0/1:1,156:32:157:0.994:2	0/1:1,137:32:138:0.993:2	0/1:0,142:33:142:1.00:2	0/1:84,83:32:167:0.497:2	0/1:0,150:33:152:1.00:2	0/1:1,95:32:96:0.990:2	0/1:0,109:32:109:1.00:2
chr2	222290829	rs35860178	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,70:32:182:0.385:2	0/1:126,63:32:189:0.333:2	./.	./.
chr2	222322643	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:33:70:0.057:2
chr2	222367238	rs56263717	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:19,25:31:44:0.568:2	0/1:15,18:30:33:0.545:2	./.	./.	./.	./.	0/1:44,36:30:80:0.450:2	./.	./.	./.	./.
chr2	223161889	rs12623857	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:29:80:1.00:2	0/1:0,42:28:42:1.00:2	0/1:0,9:29:9:1.00:2	0/1:1,71:29:72:0.986:2	0/1:75,42:27:117:0.359:2	0/1:0,91:29:91:1.00:2	0/1:1,94:27:95:0.989:2	0/1:0,83:28:84:1.00:2	0/1:0,101:29:101:1.00:2	0/1:0,52:29:52:1.00:2	0/1:0,52:25:52:1.00:2
chr2	223169150	rs10210219	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,35:28:77:0.455:2	./.	./.	0/1:32,43:28:75:0.573:2	0/1:57,32:29:89:0.360:2	./.	./.	./.
chr2	223169551	rs78245860	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,19:30:39:0.487:2	./.	./.	./.	./.	./.	./.
chr2	223389692	rs111981491	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:119,62:32:181:0.343:2	./.	./.	./.	0/1:94,95:33:189:0.503:2	./.	./.	./.
chr2	223423362	rs4674664	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,180:29:180:1.00:2	0/1:0,148:28:149:1.00:2	0/1:0,34:30:34:1.00:2	0/1:120,73:30:193:0.378:2	0/1:0,188:29:188:1.00:2	0/1:2,184:30:187:0.989:2	0/1:1,184:30:185:0.995:2	0/1:0,185:29:185:1.00:2	0/1:1,185:30:186:0.995:2	0/1:1,185:29:186:0.995:2	0/1:0,185:29:185:1.00:2
chr2	223436607	rs7185	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,136:30:136:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,33:30:33:1.00:2	0/1:106,83:31:189:0.439:2	0/1:2,95:30:97:0.979:2	0/1:0,189:30:189:1.00:2	0/1:88,47:30:135:0.348:2	0/1:0,166:30:166:1.00:2	0/1:2,188:31:190:0.989:2	0/1:0,147:31:147:1.00:2	0/1:0,167:31:167:1.00:2
chr2	223489143	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,4:31:85:0.047:2	./.	./.	./.	./.	./.	./.
chr2	223559089	rs1868024	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:33:8:1.00:2	0/1:61,58:33:119:0.487:2	0/1:55,29:31:84:0.345:2	0/1:63,44:31:107:0.411:2	0/1:26,27:32:53:0.509:2	./.	./.	0/1:48,49:33:97:0.505:2	./.
chr2	223783841	rs13000358	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,73:31:137:0.533:2	./.	./.	./.	./.	./.	0/1:50,43:31:93:0.462:2	./.
chr2	223785740	rs6756323	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:54,57:30:111:0.514:2	0/1:40,44:29:84:0.524:2	./.	./.	0/1:57,37:29:94:0.394:2	./.	0/1:66,46:29:112:0.411:2	0/1:74,51:28:125:0.408:2	0/1:71,69:30:140:0.493:2	./.	0/1:83,84:29:167:0.503:2
chr2	223789254	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:32:90:0.044:2	./.	./.	./.	./.
chr2	223917617	rs12720447	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,10:32:24:0.417:2
chr2	223917629	rs3795886	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,17:30:33:0.515:2	0/1:26,15:29:41:0.366:2	./.	0/1:0,65:28:65:1.00:2	0/1:0,54:29:54:1.00:2	./.	0/1:19,37:28:56:0.661:2	0/1:42,40:28:82:0.488:2	0/1:1,73:28:74:0.986:2	0/1:0,56:28:56:1.00:2	0/1:23,21:30:44:0.477:2
chr2	223917645	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,4:31:115:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr2	223917812	rs10201907	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:28:41:1.00:2	0/1:0,27:25:27:1.00:2	0/1:5,5:29:10:0.500:2	0/1:0,34:27:34:1.00:2	0/1:0,31:27:31:1.00:2	0/1:0,38:28:38:1.00:2	0/1:0,24:28:24:1.00:2	0/1:0,45:27:45:1.00:2	0/1:0,30:28:30:1.00:2	0/1:0,32:27:32:1.00:2	0/1:0,30:26:30:1.00:2
chr2	223917983	rs12621643	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,14:32:26:0.538:2	0/1:11,16:32:27:0.593:2	./.	0/1:2,41:32:43:0.953:2	0/1:1,60:32:61:0.984:2	./.	0/1:25,34:33:59:0.576:2	0/1:47,20:32:67:0.299:2	0/1:0,40:33:40:1.00:2	0/1:0,28:33:28:1.00:2	0/1:33,18:33:51:0.353:2
chr2	223917997	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,3:33:42:0.071:2	./.	./.
chr2	223918019	rs17221840	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,19:31:51:0.373:2	./.	./.	./.	./.	./.
chr2	223918080	rs10189762	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,22:29:22:1.00:2	0/1:0,29:29:29:1.00:2	./.	0/1:0,39:31:39:1.00:2	0/1:0,21:29:21:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,30:28:30:1.00:2	0/1:0,39:28:39:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,26:29:27:1.00:2
chr2	223918363	rs3795884	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:32:64:1.00:2	0/1:0,38:33:38:1.00:2	0/1:6,6:33:12:0.500:2	0/1:0,94:32:94:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,67:33:67:1.00:2	0/1:0,63:33:63:1.00:2	0/1:0,66:34:66:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,81:33:81:1.00:2
chr2	223920253	rs41311847	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,22:33:63:0.349:2
chr2	223920323	rs41311849	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,5:34:13:0.385:2
chr2	224462310	rs36043001	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,27:31:58:0.466:2	./.	./.	./.	./.	./.
chr2	224463054	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,34:28:70:0.486:2	0/1:24,19:28:43:0.442:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	224640647	rs373837062	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,72:32:168:0.429:2
chr2	224642579	rs116107386	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,19:33:39:0.487:2	./.	./.	./.	0/1:31,21:33:52:0.404:2	./.	./.	./.
chr2	224743373	rs571111	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,36:31:59:0.610:2	0/1:13,19:32:32:0.594:2	0/1:0,9:30:9:1.00:2	0/1:40,32:33:72:0.444:2	0/1:42,27:31:69:0.391:2	0/1:30,35:32:65:0.538:2	0/1:49,45:32:94:0.479:2	0/1:0,78:32:78:1.00:2	0/1:1,79:33:80:0.988:2	0/1:40,30:32:70:0.429:2	0/1:38,47:33:85:0.553:2
chr2	224770710	rs139858004	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,11:30:22:0.500:2	./.	./.	./.	./.	./.
chr2	224824617	rs11546405	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,71:33:151:0.470:2	./.	./.	./.	0/1:55,59:32:114:0.518:2	./.	./.	./.
chr2	224856650	rs6712954	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,51:32:106:0.481:2	0/1:28,36:32:64:0.563:2	./.	./.	./.	./.	./.	./.	0/1:67,76:33:143:0.531:2	0/1:50,75:32:125:0.600:2	0/1:70,70:32:140:0.500:2
chr2	224862842	rs12457	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,70:28:72:0.972:2	0/1:1,45:28:46:0.978:2	0/1:6,4:28:10:0.400:2	0/1:49,45:28:94:0.479:2	0/1:40,34:27:74:0.459:2	./.	./.	0/1:51,42:29:93:0.452:2	0/1:42,34:29:76:0.447:2	0/1:31,31:29:62:0.500:2	0/1:67,28:27:95:0.295:2
chr2	225244352	rs61732371	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:43,54:32:97:0.557:2	0/1:37,19:31:56:0.339:2	./.	./.	./.	./.	0/1:29,26:31:55:0.473:2	./.	0/1:34,31:32:65:0.477:2	./.	./.
chr2	225244888	rs3738954	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,16:31:31:0.516:2	0/1:28,10:29:38:0.263:2	./.	./.	./.	0/1:25,20:33:45:0.444:2
chr2	225244923	rs3738953	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,15:30:29:0.517:2	0/1:16,12:32:28:0.429:2	./.	./.	./.	0/1:27,14:33:41:0.341:2
chr2	225346646	rs2070127	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,20:32:39:0.513:2	./.	./.	./.	0/1:33,24:32:57:0.421:2
chr2	225362478	rs3738952	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,18:30:31:0.581:2	./.	./.	./.	./.
chr2	225642935	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,6:33:118:0.051:2	./.	./.	./.
chr2	225659728	rs113265459	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,74:32:145:0.510:2	./.	./.	./.
chr2	225661852	rs76100309	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,47:32:124:0.379:2	0/1:63,46:31:109:0.422:2	./.	./.	./.	./.	./.	./.
chr2	225670901	rs4674941	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,10:33:16:0.714:2	./.	./.	./.	./.	./.	0/1:33,29:33:62:0.468:2	./.	0/1:63,32:33:95:0.337:2
chr2	225672460	rs12328236	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:32:5:0.800:2	./.	./.	./.	./.	./.	0/1:32,32:32:64:0.500:2	./.	0/1:21,22:33:43:0.512:2
chr2	225684166	rs7572725	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,9:33:21:0.429:2	./.	./.	./.	./.	./.	0/1:51,46:34:97:0.474:2	./.	0/1:64,40:33:104:0.385:2
chr2	225695337	rs200129332	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:35:170:0.024:2	./.	./.
chr2	225709926	rs7577271	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,4:31:12:0.333:2	./.	./.	./.	./.	./.	0/1:33,34:30:67:0.507:2	./.	0/1:65,29:29:94:0.309:2
chr2	225709930	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,4:34:66:0.061:2	./.	./.	./.	./.	./.	./.	./.
chr2	225719693	rs16866236	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:32:12:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	225727431	rs7589474	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,5:32:14:0.357:2	./.	./.	./.	./.	./.	0/1:87,76:34:163:0.466:2	./.	0/1:89,75:32:164:0.457:2
chr2	225729627	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:31:145:0.028:2	./.	./.	./.	./.
chr2	225750861	rs2304336	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,26:33:60:0.433:2	./.	0/1:17,26:30:43:0.605:2
chr2	225811581	rs13021295	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,32:32:97:0.330:2	./.	0/1:53,49:31:102:0.480:2
chr2	225811592	rs78257220	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,33:33:99:0.333:2	./.	./.
chr2	226273689	rs2048936	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:29:75:1.00:2	0/1:0,51:29:51:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,82:28:83:1.00:2	0/1:3,54:28:57:0.947:2	0/1:48,47:29:95:0.495:2	0/1:0,89:28:89:1.00:2	0/1:0,117:29:117:1.00:2	0/1:0,113:29:113:1.00:2	0/1:0,75:28:75:1.00:2	0/1:2,89:29:91:0.978:2
chr2	226273737	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,4:33:63:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr2	226273749	rs61747063	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,25:31:54:0.463:2	./.	./.	./.	./.	./.	./.	./.
chr2	226447369	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,23:31:53:0.434:2	./.	./.	./.
chr2	226447735	rs3828256	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,17:30:17:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,15:31:15:1.00:2	0/1:16,16:31:32:0.500:2	0/1:14,11:30:25:0.440:2	./.	0/1:0,19:31:19:1.00:2	0/1:0,36:33:36:1.00:2	0/1:5,11:33:16:0.688:2	0/1:9,8:31:17:0.471:2
chr2	226491770	rs3748993	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:32:89:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,86:32:87:1.00:2	0/1:56,49:32:105:0.467:2	0/1:0,123:32:123:1.00:2	0/1:0,109:32:109:1.00:2	0/1:0,109:32:109:1.00:2	0/1:0,120:33:120:1.00:2	0/1:0,122:32:122:1.00:2	0/1:0,111:32:111:1.00:2
chr2	227660544	rs1801278	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,24:31:36:0.686:2	0/1:12,29:32:41:0.707:2	0/1:14,25:31:39:0.641:2	0/1:26,30:32:56:0.536:2	./.	./.	./.
chr2	227660776	rs35909627	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,28:30:58:0.483:2	./.	./.	./.	./.
chr2	227660967	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:30:51:0.078:2	./.
chr2	227661451	rs34909077	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,51:31:119:0.429:2	./.
chr2	227661463	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr2	227662557	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,11:14:21:0.524:2	./.
chr2	227662753	rs2234931	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,45:30:112:0.402:2	0/1:49,42:30:92:0.462:2	0/1:69,50:31:119:0.420:2	0/1:66,37:31:103:0.359:2	./.	./.	./.
chr2	227872182	rs2228557	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:50,47:32:97:0.485:2	0/1:45,21:32:66:0.318:2	0/1:15,5:31:20:0.250:2	./.	./.	0/1:68,64:31:132:0.485:2	./.	0/1:93,60:31:153:0.392:2	0/1:72,55:33:127:0.433:2	./.	0/1:82,65:32:147:0.442:2
chr2	227872995	rs2228555	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,101:32:102:0.990:2	0/1:0,59:31:59:1.00:2	0/1:14,11:32:25:0.440:2	./.	0/1:87,68:31:155:0.439:2	0/1:99,66:32:165:0.400:2	./.	0/1:78,58:32:136:0.426:2	0/1:93,58:33:151:0.384:2	0/1:2,132:32:135:0.985:2	0/1:85,58:32:143:0.406:2
chr2	227886773	rs3752895	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:32,32:30:64:0.500:2	0/1:15,11:32:26:0.423:2	0/1:2,3:33:5:0.600:2	./.	./.	0/1:31,28:32:59:0.475:2	./.	0/1:41,20:31:61:0.328:2	0/1:27,23:31:50:0.460:2	./.	0/1:38,23:32:61:0.377:2
chr2	227886828	rs75398993	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,44:33:88:0.500:2	./.
chr2	227892619	rs2228556	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,11:34:22:0.500:2	0/1:2,7:32:9:0.778:2	./.	./.	./.	0/1:13,19:32:32:0.594:2	./.	0/1:10,15:33:25:0.600:2	0/1:14,20:33:34:0.588:2	./.	0/1:11,11:33:22:0.500:2
chr2	227892720	rs2229813	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:30:10:0.500:2	0/1:3,8:31:11:0.727:2	./.	./.	./.	0/1:12,3:31:15:0.200:2	./.	./.	0/1:3,12:32:15:0.800:2	./.	0/1:14,7:31:21:0.333:2
chr2	227896886	rs2229812	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:15,13:32:28:0.464:2	0/1:11,7:32:18:0.389:2	0/1:3,3:32:6:0.500:2	./.	./.	0/1:15,20:32:35:0.571:2	./.	0/1:17,7:32:24:0.292:2	0/1:25,19:31:44:0.432:2	./.	0/1:20,13:30:33:0.394:2
chr2	227896976	rs10203363	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,11:31:27:0.407:2	0/1:9,6:31:15:0.400:2	./.	./.	./.	0/1:7,12:30:19:0.632:2	./.	0/1:15,6:31:21:0.286:2	0/1:27,8:30:35:0.229:2	./.	0/1:9,7:29:16:0.438:2
chr2	227915832	rs1800517	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,69:33:69:1.00:2	0/1:0,34:32:34:1.00:2	0/1:8,3:32:11:0.273:2	./.	0/1:34,31:32:65:0.477:2	0/1:41,34:32:75:0.453:2	./.	0/1:36,39:33:75:0.520:2	0/1:47,43:34:90:0.478:2	0/1:1,56:33:57:0.982:2	0/1:37,32:33:69:0.464:2
chr2	227915847	rs13027659	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,34:31:67:0.507:2	./.	0/1:29,32:31:61:0.525:2	./.	./.	./.	./.	./.
chr2	227942764	rs145806603	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,17:32:43:0.395:2
chr2	227946893	rs1800516	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:31,24:33:55:0.436:2	0/1:21,18:33:39:0.462:2	./.	./.	0/1:27,29:32:56:0.518:2	./.	./.	./.	./.	0/1:0,63:33:63:1.00:2	./.
chr2	227954599	rs2229814	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:72,62:32:136:0.463:2	0/1:49,32:32:81:0.395:2	0/1:11,10:31:21:0.476:2	./.	0/1:44,33:32:77:0.429:2	0/1:67,68:32:135:0.504:2	./.	0/1:99,70:32:169:0.414:2	0/1:102,67:33:169:0.396:2	0/1:2,116:32:118:0.983:2	0/1:95,80:32:176:0.457:2
chr2	228102723	rs13424243	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,9:30:28:0.321:2	./.	0/1:12,11:29:23:0.478:2	0/1:44,21:30:65:0.323:2	./.	./.	./.
chr2	228102752	rs1882435	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,29:31:30:0.967:2	0/1:0,17:31:17:1.00:2	./.	0/1:0,40:31:40:1.00:2	0/1:8,9:29:17:0.529:2	0/1:19,19:31:38:0.500:2	./.	./.	0/1:30,20:31:50:0.400:2	0/1:20,18:31:38:0.474:2	0/1:45,25:31:70:0.357:2
chr2	228111435	rs10178458	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:30:73:1.00:2	0/1:0,35:29:35:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,44:29:44:1.00:2	0/1:0,61:30:61:1.00:2	0/1:43,23:30:66:0.348:2	0/1:43,43:29:86:0.500:2	0/1:0,52:30:52:1.00:2	0/1:33,20:29:53:0.377:2	0/1:0,89:29:89:1.00:2
chr2	228113175	rs6436669	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:32:28:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,41:33:41:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,34:33:34:1.00:2	0/1:12,20:33:32:0.625:2	0/1:27,38:33:65:0.585:2	0/1:0,32:34:32:1.00:2	0/1:17,16:33:33:0.485:2	0/1:0,56:32:56:1.00:2
chr2	228121101	rs55703767	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,34:30:35:0.971:2	./.	./.	./.	./.	0/1:44,20:32:64:0.313:2	0/1:18,11:32:29:0.379:2	0/1:51,20:31:71:0.282:2
chr2	228128540	rs10205042	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:32,25:33:57:0.439:2	0/1:14,17:32:31:0.548:2	0/1:0,2:33:2:1.00:2	./.	0/1:0,20:32:20:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,32:31:32:1.00:2	0/1:25,35:32:60:0.583:2	0/1:22,20:34:42:0.476:2	./.	0/1:29,31:32:60:0.517:2
chr2	228128568	rs34505188	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	0/1:1,31:30:33:0.969:2	0/1:24,26:30:50:0.520:2	./.	./.	./.	./.	./.
chr2	228131169	rs11677877	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,11:30:16:0.688:2	./.	0/1:1,95:29:96:0.990:2	0/1:89,75:30:164:0.457:2	./.	./.	./.	./.	./.
chr2	228131752	rs34019152	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:29:5:0.600:2	./.	0/1:3,30:31:33:0.909:2	0/1:6,16:30:22:0.727:2	./.	./.	./.	./.	./.
chr2	228135631	rs28381984	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,26:32:59:0.441:2	0/1:42,23:31:65:0.354:2	0/1:31,27:34:58:0.466:2	./.	0/1:40,38:33:78:0.487:2
chr2	228194480	rs3211097	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,3:33:14:0.214:2	./.	./.	./.	0/1:83,39:32:122:0.320:2	0/1:1,97:32:98:0.990:2	0/1:120,60:33:180:0.333:2	./.	0/1:108,44:33:152:0.289:2
chr2	228194481	rs3211098	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,3:31:14:0.214:2	./.	./.	./.	0/1:78,40:31:118:0.339:2	0/1:1,97:31:98:0.990:2	0/1:123,60:32:183:0.328:2	./.	0/1:104,45:32:149:0.302:2
chr2	228197237	rs200360134	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2
chr2	228197238	rs11557342	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:30:15:0.400:2	./.	0/1:35,36:32:71:0.507:2	0/1:50,61:31:111:0.550:2	./.	./.	./.	./.	./.
chr2	228217223	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:31:145:0.028:2	./.	./.	./.	./.
chr2	228217260	rs140009845	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:61,36:32:97:0.371:2	0/1:23,26:32:49:0.531:2	./.	./.	./.	./.	./.	./.	./.	0/1:66,72:31:138:0.522:2	./.
chr2	228221725	rs74713223	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,15:34:30:0.500:2	0/1:2,7:33:9:0.778:2	./.	./.	0/1:9,11:33:20:0.550:2	0/1:17,7:33:24:0.292:2	0/1:7,12:33:19:0.632:2	./.	./.	./.	./.
chr2	228230945	rs76547437	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:47,42:33:89:0.472:2	0/1:29,30:32:59:0.508:2	./.	./.	0/1:41,26:31:67:0.388:2	0/1:48,49:31:97:0.505:2	0/1:35,26:31:61:0.426:2	./.	./.	./.	./.
chr2	228243902	rs138536526	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,49:32:108:0.454:2	./.	./.	./.
chr2	228243905	rs7574414	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,85:31:89:0.955:2	./.	./.	./.	./.	./.	./.	./.
chr2	228384735	rs1135969	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,44:33:102:0.431:2	./.	./.	./.	./.	./.
chr2	228396878	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,4:31:109:0.037:2	./.	./.	./.	./.	./.	./.	./.
chr2	228398422	rs13015491	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:31:11:0.636:2	./.	./.	./.	./.	./.	0/1:71,48:30:119:0.403:2	./.	./.
chr2	228416712	rs13426457	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,134:29:135:0.993:2	0/1:1,66:29:67:0.985:2	0/1:17,7:28:24:0.292:2	./.	0/1:3,167:29:170:0.982:2	0/1:0,180:29:180:1.00:2	0/1:102,85:29:187:0.455:2	0/1:1,187:29:188:0.995:2	0/1:99,84:30:183:0.459:2	0/1:0,117:29:117:1.00:2	0/1:1,143:28:144:0.993:2
chr2	228476140	rs2176186	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:102,93:32:195:0.477:2	0/1:85,57:32:142:0.401:2	./.	0/1:96,103:31:199:0.518:2	./.	0/1:0,194:31:194:1.00:2	./.	0/1:193,4:32:197:0.020:2	0/1:2,187:33:189:0.989:2	0/1:103,89:32:192:0.464:2	0/1:97,95:32:193:0.495:2
chr2	228476253	rs2138402	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,164:32:164:1.00:2	0/1:1,114:31:115:0.991:2	0/1:0,27:32:27:1.00:2	0/1:1,161:32:162:0.994:2	0/1:0,180:32:180:1.00:2	0/1:1,161:32:162:0.994:2	0/1:0,171:32:172:1.00:2	0/1:0,178:32:178:1.00:2	0/1:0,149:33:149:1.00:2	0/1:0,158:32:158:1.00:2	0/1:83,90:32:173:0.520:2
chr2	228493211	rs28739019	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,96:31:96:1.00:2	./.	./.	0/1:71,71:32:142:0.500:2	./.	./.	0/1:97,43:32:140:0.307:2
chr2	228563675	rs12185721	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,72:30:139:0.518:2	./.
chr2	228681077	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:33:75:0.053:2
chr2	228758554	rs1715828	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,12:32:13:0.923:2	./.	./.	0/1:47,69:32:116:0.595:2	./.	./.	./.	./.	./.
chr2	228758580	rs16824157	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,30:32:88:0.341:2	./.	./.	./.	./.	0/1:44,36:32:80:0.450:2
chr2	228762923	rs150979373	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:32:140:0.029:2	./.	./.
chr2	228776996	rs3748862	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:33,32:31:65:0.492:2	0/1:22,31:31:53:0.585:2	./.	0/1:33,32:31:65:0.492:2	./.	0/1:0,70:30:70:1.00:2	0/1:53,39:31:92:0.424:2	0/1:50,31:30:81:0.383:2	0/1:51,33:32:84:0.393:2	0/1:16,15:31:31:0.484:2	0/1:0,67:32:67:1.00:2
chr2	228855866	rs16824283	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,28:32:54:0.519:2	./.	0/1:37,29:31:66:0.439:2	0/1:40,26:32:66:0.394:2	0/1:47,27:32:74:0.365:2	0/1:0,74:32:74:1.00:2	0/1:43,22:31:65:0.338:2	./.
chr2	228855993	rs61752221	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,68:31:149:0.456:2	./.	./.	./.	./.	./.
chr2	228882970	rs3828161	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,76:28:176:0.432:2	0/1:2,148:28:150:0.987:2	./.	0/1:125,5:28:130:0.038:2	0/1:179,6:30:185:0.032:2	./.	./.	0/1:106,85:29:191:0.445:2
chr2	228883029	rs3811515	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:121,73:32:194:0.376:2	0/1:75,61:33:136:0.449:2	0/1:15,8:32:23:0.348:2	./.	./.	./.	0/1:90,60:33:150:0.400:2	./.	./.	./.	./.
chr2	228883721	rs3811514	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,52:30:95:0.547:2	0/1:17,22:29:39:0.564:2	0/1:0,17:30:17:1.00:2	0/1:41,35:29:76:0.461:2	0/1:0,64:29:64:1.00:2	./.	0/1:43,43:30:86:0.500:2	0/1:49,53:29:102:0.520:2	./.	0/1:53,54:31:107:0.505:2	0/1:50,40:30:90:0.444:2
chr2	229890660	rs34351298	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,65:32:137:0.474:2	./.	./.	./.	./.	0/1:66,57:31:123:0.463:2
chr2	230020595	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:32:147:0.027:2
chr2	230253070	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:28:78:0.051:2	./.	./.	./.
chr2	230377505	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:32:199:0.020:2	./.	./.	./.	./.	./.
chr2	230450646	rs72987941	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:20,13:29:34:0.394:2	0/1:27,16:28:43:0.372:2	./.	./.	0/1:48,40:29:88:0.455:2	./.	./.	./.	./.	./.	./.
chr2	230632268	rs6687	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,43:31:113:0.381:2	./.	./.	./.	./.	0/1:46,32:31:78:0.410:2	./.
chr2	230668858	rs13018957	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:97,87:29:184:0.473:2	0/1:52,52:29:104:0.500:2	0/1:17,9:31:26:0.346:2	./.	0/1:58,52:30:110:0.473:2	0/1:106,94:30:200:0.470:2	0/1:56,63:30:119:0.529:2	0/1:115,83:30:198:0.419:2	0/1:112,86:31:198:0.434:2	0/1:78,87:30:165:0.527:2	./.
chr2	230670459	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:33:119:0.034:2	./.	./.	./.	./.	./.
chr2	230670510	rs148271689	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,5:32:20:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	230723777	rs544480	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:27:16:0.375:2	./.	./.	./.	0/1:66,56:29:123:0.459:2	./.	./.	./.	0/1:1,91:28:92:0.989:2
chr2	230840974	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	230861519	rs1035834	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,87:32:87:1.00:2	0/1:1,45:32:46:0.978:2	./.	./.	0/1:56,38:31:94:0.404:2	./.	0/1:2,63:32:65:0.969:2	./.	0/1:91,52:32:144:0.364:2	0/1:73,45:31:118:0.381:2	./.
chr2	230910965	rs75457118	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,17:30:41:0.415:2
chr2	230914601	rs200955444	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,14:11:87:0.161:2	0/1:72,10:14:82:0.122:2	./.	./.	./.	./.	./.
chr2	230914604	rs201907506	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:56,19:20:75:0.253:2	./.	./.	0/1:69,23:16:92:0.250:2	0/1:67,31:13:98:0.316:2	0/1:69,23:16:92:0.250:2	0/1:77,27:13:104:0.260:2	0/1:91,34:14:125:0.272:2	0/1:107,15:16:122:0.123:2	0/1:49,21:20:70:0.300:2	0/1:65,36:19:101:0.356:2
chr2	230923913	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,4:29:79:0.051:2	./.	./.	./.	./.	./.	./.
chr2	231036866	rs13018234	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,30:30:75:0.400:2	./.	./.	./.	0/1:2,118:30:120:0.983:2	./.	./.	./.
chr2	231042276	rs1135791	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,23:29:43:0.535:2	0/1:112,84:29:196:0.429:2	./.	0/1:113,86:28:199:0.432:2	0/1:103,64:28:167:0.383:2	0/1:3,190:29:193:0.984:2	./.	./.	0/1:102,88:28:190:0.463:2
chr2	231050715	rs3948464	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,166:29:166:1.00:2	0/1:0,95:29:95:1.00:2	0/1:0,26:29:26:1.00:2	0/1:92,104:30:196:0.531:2	0/1:0,159:29:159:1.00:2	0/1:1,188:29:190:0.995:2	0/1:0,161:30:161:1.00:2	./.	0/1:0,192:30:192:1.00:2	0/1:101,79:29:180:0.439:2	0/1:1,183:29:184:0.995:2
chr2	231072709	rs1365776	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,62:32:64:0.969:2	0/1:1,40:33:41:0.976:2	0/1:5,4:32:9:0.444:2	0/1:0,57:32:57:1.00:2	0/1:0,35:32:35:1.00:2	0/1:39,22:32:61:0.361:2	./.	./.	0/1:0,60:33:60:1.00:2	0/1:0,54:33:54:1.00:2	0/1:53,40:33:93:0.430:2
chr2	231077112	rs28930679	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:101,63:32:164:0.384:2	0/1:50,31:32:81:0.383:2	0/1:12,9:31:22:0.429:2	./.	0/1:1,129:31:130:0.992:2	./.	./.	./.	0/1:108,77:32:185:0.416:2	./.	./.
chr2	231077154	rs41309096	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:86,41:32:128:0.323:2	0/1:31,28:33:59:0.475:2	0/1:5,4:32:9:0.444:2	./.	0/1:0,80:32:80:1.00:2	./.	./.	./.	0/1:79,63:33:142:0.444:2	./.	./.
chr2	231077683	rs41309088	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,61:31:127:0.480:2	0/1:39,36:31:75:0.480:2	./.	./.	./.	./.	./.	./.	0/1:90,89:32:179:0.497:2	./.	./.
chr2	231077698	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:34:176:0.023:2	./.	./.
chr2	231077725	rs1129411	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:30:92:1.00:2	0/1:0,56:30:56:1.00:2	0/1:0,15:31:15:1.00:2	0/1:66,71:30:137:0.518:2	0/1:0,136:30:136:1.00:2	0/1:0,122:30:122:1.00:2	0/1:2,147:30:149:0.987:2	0/1:160,9:31:169:0.053:2	0/1:0,152:31:152:1.00:2	0/1:41,62:31:103:0.602:2	0/1:0,127:30:127:1.00:2
chr2	231110582	rs28445040	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,36:32:71:0.507:2	./.	./.	./.	./.	./.	./.
chr2	231118041	rs3820975	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,8:34:14:0.571:2	0/1:68,42:33:110:0.382:2	./.	./.	./.	./.	0/1:83,46:34:129:0.357:2	0/1:45,44:33:90:0.494:2	./.
chr2	231120256	rs200772144	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	./.	./.	./.	0/1:3,3:30:6:0.500:2
chr2	231120257	rs201513131	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,9:24:29:0.310:2	./.	./.	./.	./.	0/1:26,15:23:41:0.366:2
chr2	231149094	rs370248892	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,48:32:123:0.390:2	0/1:36,21:31:57:0.368:2	./.	./.	./.	./.	./.	./.	0/1:75,52:32:127:0.409:2	./.	./.
chr2	231149097	rs4972945	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,99:30:196:0.505:2	./.	./.	./.	./.	0/1:54,74:30:129:0.578:2	0/1:52,75:30:127:0.591:2	./.
chr2	231149108	rs4972946	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,134:31:134:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,188:31:188:1.00:2	0/1:0,92:31:92:1.00:2	0/1:0,149:31:149:1.00:2	0/1:0,98:31:98:1.00:2	0/1:71,90:31:161:0.559:2	0/1:0,134:32:134:1.00:2	0/1:0,132:31:132:1.00:2	0/1:0,167:31:167:1.00:2
chr2	231175549	rs200258126	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,17:30:60:0.283:2	./.	0/1:142,53:29:195:0.272:2	0/1:153,42:27:195:0.215:2	0/1:133,57:28:191:0.300:2	./.	./.	./.	0/1:137,48:28:187:0.259:2
chr2	231176196	rs201144938	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:145,49:31:194:0.253:2	./.	./.	./.	./.	0/1:155,45:31:200:0.225:2	0/1:148,49:31:197:0.249:2	./.
chr2	231222570	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,4:32:87:0.046:2	./.	./.	./.	./.	./.	./.
chr2	231222655	rs10498250	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,27:32:51:0.529:2	./.	./.	./.	./.	0/1:35,30:32:65:0.462:2	0/1:20,18:31:38:0.474:2	./.
chr2	231222675	rs4973318	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,17:28:37:0.459:2	./.	./.	./.	./.	0/1:27,17:27:44:0.386:2	0/1:13,12:28:25:0.480:2	./.
chr2	231248261	rs28497362	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,76:31:154:0.494:2	0/1:99,90:32:189:0.476:2
chr2	231249970	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:33:86:0.047:2	./.
chr2	231256812	rs7559665	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,87:29:87:1.00:2	0/1:1,42:28:43:0.977:2	./.	0/1:39,48:30:87:0.552:2	./.	./.	0/1:29,28:30:57:0.491:2	./.	0/1:70,52:31:122:0.426:2	./.	./.
chr2	231256876	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:128:0.031:2	./.	./.	./.
chr2	231256878	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,5:31:128:0.039:2	./.	./.	./.
chr2	231256921	.	T	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:77,11:14:88:0.125:2	./.	./.	0/1:71,10:15:81:0.123:2	./.	0/1:69,9:17:78:0.115:2	0/1:45,14:13:59:0.237:2	./.	./.	0/1:58,7:21:65:0.108:2	./.
chr2	231258150	rs7590429	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,22:32:22:1.00:2	./.	0/1:15,12:32:27:0.444:2	0/1:27,19:32:46:0.413:2
chr2	231265761	rs374897131	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,20:28:75:0.267:2	./.	0/1:149,42:27:191:0.220:2	0/1:141,52:29:194:0.269:2	0/1:141,49:27:191:0.258:2	./.	./.	./.	0/1:139,47:28:186:0.253:2
chr2	231266408	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:147,50:30:198:0.254:2	./.	./.	./.	./.	0/1:152,47:32:199:0.236:2	0/1:151,46:32:198:0.234:2	./.
chr2	231314093	rs62193406	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,42:32:111:0.378:2	./.	./.	./.
chr2	231326065	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:32:151:0.026:2	./.	./.	./.	./.	./.
chr2	231327220	rs75519436	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,38:32:81:0.469:2	0/1:15,21:32:36:0.583:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	231331896	rs1050224	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,13:33:33:0.394:2	0/1:17,11:32:28:0.393:2	0/1:2,3:33:5:0.600:2	0/1:32,31:31:63:0.492:2	0/1:23,30:31:53:0.566:2	0/1:0,46:32:46:1.00:2	0/1:31,30:32:61:0.492:2	0/1:0,48:31:48:1.00:2	./.	0/1:17,11:32:28:0.393:2	0/1:0,50:32:50:1.00:2
chr2	231333763	rs12724	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,10:31:17:0.588:2	0/1:45,30:32:75:0.400:2	0/1:17,15:32:32:0.469:2	0/1:0,61:32:61:1.00:2	./.	./.	./.	0/1:39,36:32:76:0.480:2	0/1:2,83:33:86:0.976:2
chr2	231333834	rs1649873	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:31:3:0.667:2	0/1:18,11:31:29:0.379:2	0/1:5,3:30:8:0.375:2	0/1:0,22:31:22:1.00:2	./.	./.	./.	0/1:4,12:32:16:0.750:2	0/1:0,35:31:35:1.00:2
chr2	231334508	rs72983752	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,8:33:9:0.889:2
chr2	231379968	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,3:32:46:0.065:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	231405644	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:34:124:0.032:2
chr2	231406012	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:33:106:0.038:2	./.	./.	./.	./.
chr2	231406070	rs17275036	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,35:31:89:0.393:2	./.	./.	./.	0/1:31,41:31:72:0.569:2	0/1:55,52:31:107:0.486:2
chr2	231406680	rs836237	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:29:68:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,14:30:14:1.00:2	0/1:2,85:30:87:0.977:2	0/1:41,17:30:58:0.293:2	0/1:0,83:30:83:1.00:2	0/1:34,33:30:67:0.493:2	0/1:2,91:30:93:0.978:2	0/1:0,97:31:97:1.00:2	0/1:0,90:30:90:1.00:2	0/1:0,134:30:134:1.00:2
chr2	231738168	rs2289235	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,76:30:163:0.466:2	0/1:81,68:30:149:0.456:2	0/1:83,68:30:151:0.450:2	0/1:83,89:30:172:0.517:2	0/1:4,180:29:184:0.978:2	./.	0/1:0,98:30:99:1.00:2	0/1:59,43:27:102:0.422:2
chr2	231738263	rs2289234	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,72:31:154:0.468:2	0/1:86,49:31:135:0.363:2	0/1:87,51:30:138:0.370:2	0/1:75,56:30:131:0.427:2	0/1:4,136:30:140:0.971:2	./.	0/1:0,95:32:95:1.00:2	0/1:83,78:31:162:0.484:2
chr2	231738269	rs2289233	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,67:31:139:0.486:2	0/1:78,46:31:124:0.371:2	0/1:80,48:30:128:0.375:2	0/1:73,59:31:132:0.447:2	0/1:3,125:30:129:0.977:2	./.	0/1:0,84:32:84:1.00:2	0/1:76,68:31:144:0.472:2
chr2	231774844	rs2396777	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,42:31:81:0.519:2	./.	./.	./.	./.	./.	./.
chr2	231775094	rs3749073	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,46:31:103:0.447:2	./.	./.	./.	./.	./.	./.
chr2	231775297	rs1992186	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,13:33:30:0.433:2	0/1:12,10:30:22:0.455:2	./.	0/1:27,21:32:48:0.438:2	0/1:21,13:33:34:0.382:2	0/1:17,25:32:42:0.595:2	./.	./.	./.	./.	./.
chr2	231861044	rs13005918	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:29:2:1.00:2	0/1:1,53:31:54:0.981:2	0/1:0,65:30:65:1.00:2	0/1:43,29:31:72:0.403:2	0/1:0,50:31:50:1.00:2	0/1:94,21:30:115:0.183:2	./.	0/1:44,15:32:59:0.254:2	0/1:40,16:31:56:0.286:2
chr2	231861071	rs61738380	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,30:33:54:0.556:2	0/1:31,38:33:69:0.551:2	0/1:52,18:32:71:0.257:2	0/1:29,31:33:60:0.517:2	0/1:110,14:32:124:0.113:2	./.	0/1:55,10:32:65:0.154:2	0/1:50,12:32:62:0.194:2
chr2	231864529	rs6436986	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,14:32:38:0.368:2	0/1:7,6:33:13:0.462:2	0/1:0,6:32:6:1.00:2	0/1:16,22:33:38:0.579:2	0/1:0,27:31:27:1.00:2	0/1:21,15:32:36:0.417:2	0/1:0,32:33:32:1.00:2	0/1:23,18:30:41:0.439:2	./.	0/1:11,24:32:35:0.686:2	0/1:19,20:31:39:0.513:2
chr2	231865090	rs2271376	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,62:31:126:0.492:2	0/1:42,43:31:85:0.506:2	0/1:0,29:32:29:1.00:2	0/1:98,75:32:173:0.434:2	0/1:2,107:31:109:0.982:2	0/1:109,63:31:172:0.366:2	0/1:1,49:32:50:0.980:2	0/1:153,46:31:199:0.231:2	./.	0/1:74,57:31:131:0.435:2	0/1:74,35:31:109:0.321:2
chr2	231865144	rs12105962	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,89:33:159:0.560:2	./.	0/1:85,99:32:184:0.538:2	./.	./.	./.	0/1:63,84:33:147:0.571:2	0/1:48,60:31:108:0.556:2
chr2	231944264	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:33:95:0.042:2	./.
chr2	231988460	rs189218498	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,85:31:167:0.509:2	./.	./.	./.
chr2	232018335	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,55:30:140:0.393:2	./.	./.
chr2	232072912	rs11558174	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:61,45:32:106:0.425:2	0/1:30,14:32:44:0.318:2	./.	0/1:87,79:32:166:0.476:2	./.	./.	0/1:57,29:33:87:0.337:2	./.	./.	./.	0/1:97,65:32:162:0.401:2
chr2	232081483	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,5:28:149:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr2	232087474	rs1626450	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:33:58:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,9:32:9:1.00:2	0/1:2,59:32:61:0.967:2	0/1:0,16:31:16:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,28:32:29:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,73:33:73:1.00:2	0/1:0,69:33:69:1.00:2	0/1:0,111:33:111:1.00:2
chr2	232087475	rs1626451	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:32:58:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,9:31:9:1.00:2	0/1:2,59:31:61:0.967:2	0/1:0,16:31:16:1.00:2	0/1:0,69:30:69:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,73:33:73:1.00:2	0/1:1,69:32:70:0.986:2	0/1:0,111:31:111:1.00:2
chr2	232146762	rs115969543	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,38:31:87:0.437:2	./.	./.	./.	./.	./.
chr2	232156084	rs148296188	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,30:32:58:0.517:2	./.	./.	./.	./.	./.
chr2	232196564	rs1669083	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,47:31:110:0.427:2	./.	0/1:59,40:32:99:0.404:2	0/1:66,48:32:114:0.421:2	0/1:60,58:32:118:0.492:2	./.	./.
chr2	232196597	rs1669084	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,22:32:62:0.355:2	./.	0/1:43,28:32:71:0.394:2	0/1:35,35:33:70:0.500:2	0/1:40,39:33:79:0.494:2	./.	./.
chr2	232263127	rs2290130	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,10:29:24:0.417:2	./.	0/1:80,56:28:136:0.412:2	./.	./.	./.	0/1:71,82:31:153:0.536:2	./.	./.
chr2	232326417	rs1131171	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:190,4:32:194:0.021:2	./.	0/1:25,32:32:57:0.561:2	./.	./.	0/1:98,98:31:196:0.500:2	./.	./.	./.	0/1:103,87:32:190:0.458:2	0/1:98,97:32:195:0.497:2
chr2	232378231	rs6750795	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:68,58:32:126:0.460:2	0/1:37,31:32:68:0.456:2	0/1:0,6:32:6:1.00:2	./.	0/1:66,61:31:127:0.480:2	0/1:62,85:32:148:0.578:2	0/1:48,58:32:106:0.547:2	0/1:80,84:32:164:0.512:2	0/1:78,76:33:154:0.494:2	0/1:55,57:32:112:0.509:2	0/1:81,82:33:163:0.503:2
chr2	232392957	rs150482580	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,40:32:77:0.519:2	0/1:25,23:31:48:0.479:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	232457857	rs17199614	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,18:29:44:0.409:2	0/1:26,27:30:53:0.509:2
chr2	232457880	rs74460533	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,31:32:50:0.620:2	./.	./.	./.
chr2	232457983	rs149451630	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,35:32:72:0.486:2	./.
chr2	232458443	rs10933378	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,13:29:13:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,25:31:25:1.00:2	0/1:1,29:33:30:0.967:2	0/1:1,31:32:32:0.969:2	0/1:0,25:33:25:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,13:30:13:1.00:2
chr2	232458482	rs150621017	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,24:32:45:0.533:2	./.	./.	./.	./.	./.
chr2	232578033	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,7:34:195:0.036:2	./.
chr2	232653358	rs11557625	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,21:33:60:0.350:2
chr2	232656436	rs115875756	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,86:31:182:0.473:2	./.	./.	./.	./.	./.
chr2	232656741	rs117887698	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,40:30:116:0.345:2	./.	./.	0/1:67,54:30:121:0.446:2	./.	./.	./.	./.
chr2	232790229	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:31:135:0.030:2
chr2	232879671	rs723044	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,20:31:29:0.690:2	./.	./.	./.
chr2	232995439	rs184764939	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,48:31:91:0.539:2	./.	./.
chr2	233075081	rs17272089	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,64:32:126:0.508:2	0/1:32,28:32:60:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	233127939	rs148474013	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:33:11:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	233199107	rs75782436	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,47:32:102:0.461:2	./.	./.	./.
chr2	233199346	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:142,8:30:151:0.053:2	0/1:74,13:30:88:0.149:2	0/1:28,4:34:32:0.125:2	0/1:170,19:30:189:0.101:2	0/1:184,9:30:195:0.047:2	./.	0/1:183,15:31:198:0.076:2	0/1:183,11:31:194:0.057:2	0/1:170,12:31:182:0.066:2	./.	0/1:111,5:27:116:0.043:2
chr2	233199380	rs201503361	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:159,9:29:169:0.054:2	0/1:88,13:30:101:0.129:2	0/1:27,5:32:32:0.156:2	0/1:172,19:30:191:0.099:2	0/1:184,10:31:194:0.052:2	./.	0/1:171,17:31:188:0.090:2	0/1:176,13:30:190:0.069:2	0/1:181,14:30:195:0.072:2	./.	0/1:125,5:29:130:0.038:2
chr2	233201328	rs3811578	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,7:29:15:0.467:2	./.	./.	./.
chr2	233243586	rs1130335	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,32:30:98:0.327:2	./.	./.	./.	./.	./.
chr2	233243981	rs13026692	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,38:31:100:0.380:2	0/1:32,30:31:62:0.484:2	0/1:5,8:31:13:0.615:2	0/1:0,136:31:136:1.00:2	./.	./.	0/1:0,130:31:130:1.00:2	0/1:108,75:31:183:0.410:2	0/1:0,135:32:136:1.00:2	./.	./.
chr2	233244230	rs1130341	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2	./.	./.	./.	./.
chr2	233244586	rs2853374	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:28:76:1.00:2	0/1:0,60:27:60:1.00:2	0/1:10,6:28:16:0.375:2	0/1:0,105:28:105:1.00:2	0/1:0,111:28:111:1.00:2	0/1:0,138:28:138:1.00:2	0/1:0,73:28:73:1.00:2	0/1:0,133:28:133:1.00:2	0/1:0,74:28:74:1.00:2	0/1:0,95:27:95:1.00:2	0/1:0,49:27:49:1.00:2
chr2	233244616	rs74337556	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:32:136:0.029:2	./.	./.	./.	./.
chr2	233244930	rs1048988	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,78:33:182:0.429:2	0/1:60,36:32:96:0.375:2	./.	./.	./.	0/1:119,70:32:189:0.370:2	./.	0/1:103,78:33:181:0.431:2	0/1:184,6:33:190:0.032:2	0/1:105,84:32:189:0.444:2	0/1:93,83:33:176:0.472:2
chr2	233244937	rs1048989	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:178,12:31:190:0.063:2	0/1:100,6:32:106:0.057:2	./.	./.	./.	0/1:176,16:32:192:0.083:2	./.	0/1:185,8:31:193:0.041:2	0/1:185,6:32:191:0.031:2	0/1:175,20:30:195:0.103:2	0/1:175,12:30:187:0.064:2
chr2	233245020	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,5:29:122:0.041:2	./.	./.	./.
chr2	233245026	rs2853378	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,5:27:100:0.050:2	./.	0/1:62,50:28:113:0.446:2	0/1:81,15:29:96:0.156:2	./.	./.	./.	./.
chr2	233245141	rs2260309	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,91:30:154:0.591:2	0/1:35,42:30:77:0.545:2	0/1:3,8:31:11:0.727:2	0/1:0,119:30:119:1.00:2	./.	0/1:63,127:30:190:0.668:2	0/1:7,185:30:192:0.964:2	0/1:83,114:30:197:0.579:2	0/1:0,152:30:152:1.00:2	0/1:103,89:30:192:0.464:2	0/1:65,95:30:160:0.594:2
chr2	233245210	rs13034594	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,55:30:160:0.344:2	0/1:88,27:32:115:0.235:2	./.	./.	./.	0/1:126,57:30:183:0.311:2	./.	0/1:128,49:31:177:0.277:2	0/1:134,49:31:183:0.268:2	0/1:90,59:30:150:0.396:2	0/1:136,54:30:190:0.284:2
chr2	233246055	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:34:188:0.021:2	./.	./.	./.
chr2	233271628	rs61730279	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:33:109:0.037:2	./.	./.	./.	./.
chr2	233271669	rs139018608	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,5:32:103:0.049:2	./.	./.	./.	./.	./.
chr2	233271687	rs200991140	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,9:29:105:0.086:2	./.	./.	./.	./.	./.
chr2	233271799	rs146369944	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:42,4:32:46:0.087:2	./.	./.	./.	0/1:56,10:31:66:0.152:2	0/1:64,11:27:75:0.147:2	0/1:57,6:33:63:0.095:2	./.	0/1:48,10:31:58:0.172:2	0/1:47,7:30:54:0.130:2	0/1:37,4:31:41:0.098:2
chr2	233272091	rs146482704	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,50:31:125:0.400:2	./.	./.	./.	./.	./.
chr2	233273011	rs75920311	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:140,50:28:190:0.263:2	./.	./.	0/1:113,45:28:158:0.285:2	./.	./.	./.	./.
chr2	233273018	rs75080031	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:175,19:31:194:0.098:2	./.	./.	0/1:139,49:31:189:0.261:2	./.	0/1:179,16:30:196:0.082:2	0/1:117,44:31:162:0.273:2	0/1:174,23:30:197:0.117:2	./.	0/1:175,18:31:193:0.093:2	0/1:170,22:27:192:0.115:2
chr2	233273081	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:150,4:31:155:0.026:2	./.	./.	./.	./.	./.	./.
chr2	233273102	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:101,4:31:105:0.038:2	./.	./.	./.	./.	./.	./.
chr2	233273107	rs1130346	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,4:32:64:0.063:2	0/1:46,7:32:54:0.132:2	./.	./.	./.	0/1:56,6:32:62:0.097:2	./.	0/1:88,11:32:99:0.111:2	0/1:61,13:32:74:0.176:2	0/1:0,23:31:23:1.00:2	0/1:36,4:27:41:0.100:2
chr2	233273207	rs2945421	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:44,7:29:51:0.137:2	./.	./.	0/1:107,12:30:119:0.101:2	./.	0/1:79,20:30:99:0.202:2	0/1:114,23:30:137:0.168:2	0/1:66,23:30:89:0.258:2	0/1:53,26:31:79:0.329:2	0/1:0,4:32:5:1.00:2	0/1:58,6:31:65:0.094:2
chr2	233273244	rs17416141	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:57,6:33:64:0.095:2	0/1:33,4:25:37:0.108:2	./.	0/1:91,60:31:152:0.397:2	./.	0/1:0,95:31:95:1.00:2	0/1:85,106:31:191:0.555:2	0/1:92,25:32:117:0.214:2	0/1:93,19:32:112:0.170:2	0/1:0,11:32:11:1.00:2	0/1:80,6:31:86:0.070:2
chr2	233273291	rs186417264	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,8:31:141:0.057:2	0/1:122,4:30:126:0.032:2	0/1:1,15:30:16:0.938:2	0/1:71,4:30:75:0.053:2
chr2	233273504	rs183793479	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,14:31:14:1.00:2	0/1:1,3:32:4:0.750:2	./.	0/1:2,26:31:28:0.929:2	0/1:0,26:30:26:1.00:2	0/1:0,19:30:19:1.00:2	0/1:1,19:29:20:0.950:2	0/1:2,7:32:9:0.778:2	0/1:2,12:29:14:0.857:2	./.	./.
chr2	233274145	rs2090543	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,46:29:47:0.979:2	0/1:0,40:28:40:1.00:2	0/1:23,7:29:30:0.233:2	0/1:1,86:28:87:0.989:2	0/1:0,83:28:83:1.00:2	0/1:1,63:29:64:0.984:2	0/1:0,59:29:59:1.00:2	0/1:2,31:28:33:0.939:2	0/1:1,46:29:47:0.979:2	0/1:0,10:32:10:1.00:2	./.
chr2	233274509	rs1048995	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:29:5:0.600:2	./.	./.	./.	./.	./.	./.	./.
chr2	233321641	rs61732032	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,93:30:191:0.487:2	0/1:94,97:31:192:0.508:2	./.	./.	./.	0/1:63,69:30:132:0.523:2
chr2	233322958	rs41265121	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,83:29:167:0.500:2	0/1:82,42:30:125:0.339:2	./.	./.	./.	0/1:37,24:29:62:0.393:2
chr2	233346498	rs142492002	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:30:8:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	233347590	rs1190429	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,54:32:137:0.394:2	./.	./.	./.	./.
chr2	233347804	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:141,12:14:153:0.078:2	./.	./.	./.	./.	./.	./.	./.
chr2	233348878	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,7:20:126:0.056:2	./.	./.	./.	./.
chr2	233348883	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,22:9:119:0.185:2	./.	0/1:93,29:7:122:0.238:2	./.	./.	./.	./.
chr2	233349588	rs1529874	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:29:54:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,59:29:59:1.00:2	0/1:0,132:29:133:1.00:2	0/1:0,65:29:65:1.00:2	0/1:0,87:29:87:1.00:2	0/1:0,97:29:97:1.00:2	0/1:0,78:29:78:1.00:2	0/1:0,80:29:81:1.00:2	0/1:0,51:30:51:1.00:2
chr2	233390937	rs2245601	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,22:30:22:1.00:2	./.	0/1:0,189:29:189:1.00:2	./.	./.	0/1:3,184:29:187:0.984:2	./.	0/1:89,52:29:141:0.369:2	./.
chr2	233392181	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,4:33:24:0.167:2	./.	./.	./.	./.	./.	./.
chr2	233399919	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:30:104:0.038:2	./.	./.	./.	./.	./.
chr2	233410294	rs2099489	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,79:30:79:1.00:2	./.	0/1:61,57:31:118:0.483:2	./.	./.	./.	./.	0/1:1,66:31:67:0.985:2
chr2	233412820	rs4973539	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:33:3:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr2	233413648	rs72991949	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2
chr2	233413771	rs6752614	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:32:9:1.00:2	0/1:9,9:32:18:0.500:2	0/1:8,11:31:19:0.579:2	./.	0/1:11,5:33:16:0.313:2	./.	0/1:5,7:33:12:0.583:2	0/1:0,28:33:28:1.00:2
chr2	233414341	rs4973540	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:31:7:1.00:2	0/1:6,5:31:11:0.455:2	./.	./.	0/1:4,5:31:9:0.556:2	./.	./.	0/1:0,8:33:8:1.00:2
chr2	233414660	rs4973541	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,35:33:35:1.00:2	./.	0/1:13,13:31:26:0.500:2	./.	./.	./.	./.	0/1:0,26:32:26:1.00:2
chr2	233414721	rs11683262	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,35:31:35:1.00:2	./.	0/1:22,16:29:38:0.421:2	./.	./.	./.	./.	0/1:0,28:31:28:1.00:2
chr2	233414832	rs11689217	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:34:10:1.00:2	./.	0/1:3,6:33:9:0.667:2	./.	./.	./.	./.	0/1:0,18:33:18:1.00:2
chr2	233438786	rs2293338	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:32:12:0.667:2	./.	0/1:36,65:32:101:0.644:2	./.	./.	0/1:45,57:32:102:0.559:2	./.	./.	./.
chr2	233470843	rs7571133	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,73:31:74:0.986:2	0/1:0,35:31:35:1.00:2	0/1:12,5:30:17:0.294:2	0/1:85,75:29:160:0.469:2	./.	./.	0/1:3,89:30:92:0.967:2	./.	0/1:1,116:31:117:0.991:2	./.	0/1:67,38:29:106:0.362:2
chr2	233498669	rs2276557	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,4:28:4:1.00:2	./.	./.	./.	./.	./.	./.
chr2	233537094	rs201148325	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,90:32:192:0.469:2	./.	./.	./.
chr2	233537125	rs11550699	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:56,46:33:102:0.451:2	0/1:25,24:32:49:0.490:2	0/1:6,13:32:19:0.684:2	./.	0/1:1,153:32:154:0.994:2	0/1:80,70:32:150:0.467:2	0/1:109,87:32:196:0.444:2	0/1:91,92:32:183:0.503:2	./.	0/1:58,56:33:114:0.491:2	./.
chr2	233599904	rs11555646	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,18:32:48:0.375:2	0/1:40,43:32:83:0.518:2	./.	0/1:31,19:32:50:0.380:2	./.	./.	./.
chr2	233633460	rs1801251	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,12:31:15:0.800:2	./.	0/1:43,52:30:95:0.547:2	0/1:75,69:30:144:0.479:2	./.	0/1:99,71:30:170:0.418:2	./.	./.	./.
chr2	233653267	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:31:70:0.057:2	./.
chr2	233660900	rs200311449	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:33:60:0.067:2	./.	./.	./.	./.
chr2	233708806	rs3816334	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:33:88:1.00:2	0/1:0,56:33:56:1.00:2	0/1:6,13:32:19:0.684:2	0/1:0,111:33:111:1.00:2	0/1:68,50:33:119:0.424:2	0/1:53,58:32:111:0.523:2	0/1:5,96:33:101:0.950:2	0/1:102,96:33:198:0.485:2	0/1:1,124:33:125:0.992:2	0/1:0,132:33:132:1.00:2	0/1:1,135:33:136:0.993:2
chr2	233708812	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:39:130:0.031:2	./.	./.	./.	./.	./.
chr2	233709215	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:34:38:0.105:2	./.	./.
chr2	233712227	rs66736190	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:2,8:30:10:0.800:2	./.	./.	./.	0/1:8,3:28:11:0.273:2	./.	0/1:0,6:32:6:1.00:2	./.	./.	0/1:0,9:32:9:1.00:2	./.
chr2	233712248	rs12328151	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:4,9:27:13:0.692:2	0/1:7,11:31:18:0.611:2	./.	0/1:6,4:28:10:0.400:2	./.	./.	./.	./.	./.	./.	./.
chr2	233740227	rs778338	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:40,20:32:60:0.333:2	0/1:24,8:31:32:0.250:2	./.	0/1:2,57:31:59:0.966:2	./.	0/1:47,32:32:79:0.405:2	0/1:2,64:31:66:0.970:2	./.	./.	./.	0/1:0,65:32:65:1.00:2
chr2	233750074	rs2292725	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:16,17:30:33:0.515:2	0/1:13,18:30:31:0.581:2	./.	0/1:2,96:29:98:0.980:2	./.	0/1:33,46:29:79:0.582:2	./.	./.	./.	./.	./.
chr2	233757679	rs748002	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,163:32:166:0.982:2	./.	./.	./.	0/1:0,135:32:135:1.00:2
chr2	233757697	rs895432	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:31:94:1.00:2	0/1:0,71:30:71:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,124:31:124:1.00:2	0/1:0,132:30:132:1.00:2	0/1:0,168:30:168:1.00:2	0/1:0,133:31:133:1.00:2	0/1:1,125:30:126:0.992:2	0/1:0,130:31:130:1.00:2	0/1:0,125:31:125:1.00:2	0/1:0,119:31:119:1.00:2
chr2	233785015	rs778354	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,18:32:18:1.00:2	0/1:0,11:31:11:1.00:2	./.	0/1:0,19:32:19:1.00:2	./.	0/1:0,16:31:16:1.00:2	0/1:0,23:32:23:1.00:2	./.	./.	./.	0/1:0,21:32:21:1.00:2
chr2	233834975	rs4973588	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,142:29:144:0.993:2	0/1:0,76:29:76:1.00:2	0/1:0,13:29:13:1.00:2	0/1:0,134:29:134:1.00:2	0/1:1,140:29:141:0.993:2	0/1:3,148:29:151:0.980:2	0/1:1,131:29:132:0.992:2	0/1:0,156:29:156:1.00:2	0/1:0,149:30:149:1.00:2	0/1:0,158:29:158:1.00:2	0/1:91,106:29:197:0.538:2
chr2	233877865	rs111339824	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:35:119:0.034:2	./.	./.	./.
chr2	233899126	rs2233391	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,44:30:44:1.00:2	0/1:0,35:30:35:1.00:2	./.	./.	0/1:33,35:29:68:0.515:2	0/1:46,28:29:74:0.378:2	./.	0/1:2,64:28:66:0.970:2	./.	0/1:20,11:30:31:0.355:2	0/1:23,20:29:43:0.465:2
chr2	233925239	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:33:123:0.033:2
chr2	234106812	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:31:46:0.087:2
chr2	234113057	rs7346	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:30:4:0.750:2	./.	./.	./.	./.
chr2	234115337	rs3792117	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,11:31:37:0.297:2	./.	./.	./.	./.	./.	./.	./.
chr2	234171812	rs13011156	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:48,35:33:83:0.422:2	0/1:30,22:33:52:0.423:2	./.	./.	0/1:70,48:33:118:0.407:2	./.	./.	./.	./.	./.	./.
chr2	234183368	rs2241880	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,120:32:120:1.00:2	0/1:0,69:33:69:1.00:2	0/1:19,9:33:28:0.321:2	0/1:89,77:33:166:0.464:2	0/1:66,53:33:119:0.445:2	0/1:102,75:32:177:0.424:2	0/1:89,69:32:158:0.437:2	0/1:98,95:33:193:0.492:2	0/1:2,155:33:158:0.987:2	0/1:0,114:33:115:1.00:2	./.
chr2	234186290	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:198:0.020:2	./.	./.	./.
chr2	234191361	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:34:185:0.022:2	./.	./.
chr2	234217866	rs200078242	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,36:31:94:0.383:2	./.	./.	./.
chr2	234227523	rs2304777	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,122:31:123:0.992:2	0/1:3,51:29:54:0.944:2	0/1:11,9:31:20:0.450:2	0/1:90,90:30:180:0.500:2	0/1:66,68:29:134:0.507:2	0/1:77,73:30:150:0.487:2	0/1:4,149:30:153:0.974:2	0/1:86,75:29:161:0.466:2	0/1:0,130:31:130:1.00:2	0/1:0,139:31:139:1.00:2	0/1:59,86:30:145:0.593:2
chr2	234229295	rs72976383	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,32:31:56:0.571:2	./.	./.
chr2	234235820	rs2304773	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,53:33:126:0.421:2	./.	./.	./.	./.	./.	./.	0/1:68,49:33:117:0.419:2
chr2	234250959	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:33:153:0.026:2
chr2	234255547	rs1046974	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,58:32:58:1.00:2	0/1:1,46:31:47:0.979:2	0/1:6,7:30:13:0.538:2	./.	./.	0/1:48,40:31:88:0.455:2	0/1:3,50:31:53:0.943:2	0/1:52,48:32:100:0.480:2	./.	0/1:0,66:31:66:1.00:2	0/1:0,100:31:100:1.00:2
chr2	234255548	rs1046976	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,33:35:80:0.413:2	./.	./.
chr2	234294644	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,3:30:22:0.136:2	./.	./.	./.	./.	./.	./.	./.
chr2	234350586	rs73995951	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:29:94:0.043:2	./.	./.
chr2	234354320	rs2305541	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,81:30:173:0.471:2	./.	./.	./.	./.	./.	./.	./.
chr2	234356807	rs10208953	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,26:33:73:0.356:2	./.	./.	./.	./.	./.	./.	./.
chr2	234368468	rs61752229	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	234371351	rs2228939	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,24:33:50:0.480:2	./.	./.	./.	./.	0/1:20,21:33:41:0.512:2	./.	0/1:28,20:32:48:0.417:2
chr2	234372874	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:32:133:0.030:2	./.	./.
chr2	234386134	rs2971863	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,4:30:11:0.364:2	0/1:35,29:31:65:0.453:2	./.	0/1:28,17:29:45:0.378:2	./.	./.	./.	0/1:19,8:28:27:0.296:2	0/1:26,24:29:50:0.480:2
chr2	234394487	rs1048603	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,7:30:10:0.700:2	0/1:0,93:31:93:1.00:2	./.	0/1:50,56:31:107:0.528:2	./.	0/1:59,59:32:118:0.500:2	0/1:65,54:32:119:0.454:2	0/1:42,34:32:76:0.447:2	0/1:0,92:31:92:1.00:2
chr2	234394569	rs2603547	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,16:31:44:0.364:2	./.	0/1:22,22:29:44:0.500:2	./.	./.	./.	0/1:21,16:31:37:0.432:2	0/1:20,16:28:36:0.444:2
chr2	234396605	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:35:47:0.085:2	./.	./.
chr2	234432017	rs838543	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,5:33:13:0.385:2	0/1:59,58:31:117:0.496:2	./.	0/1:61,60:31:121:0.496:2	./.	./.	./.	0/1:51,42:32:93:0.452:2	0/1:53,63:33:116:0.543:2
chr2	234432061	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,4:32:110:0.037:2	./.	./.	./.	./.	./.	./.	./.
chr2	234433124	rs838549	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,12:30:31:0.387:2	./.	0/1:25,23:31:48:0.479:2	./.	./.	./.	0/1:13,16:32:29:0.552:2	0/1:20,26:32:46:0.565:2
chr2	234449316	rs2167884	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,99:32:100:1.00:2	0/1:0,57:32:57:1.00:2	0/1:21,11:31:32:0.344:2	0/1:78,85:31:163:0.521:2	0/1:0,84:31:84:1.00:2	0/1:72,74:31:146:0.507:2	0/1:0,92:31:92:1.00:2	0/1:0,156:31:156:1.00:2	0/1:0,128:32:128:1.00:2	0/1:73,72:31:145:0.497:2	0/1:86,68:31:154:0.442:2
chr2	234469664	rs6753062	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,73:33:74:0.986:2	0/1:0,37:32:37:1.00:2	0/1:4,4:32:8:0.500:2	0/1:41,32:32:73:0.438:2	0/1:0,59:31:59:1.00:2	0/1:39,56:32:95:0.589:2	0/1:0,44:32:44:1.00:2	0/1:52,31:32:83:0.373:2	0/1:0,67:32:68:1.00:2	0/1:26,32:32:58:0.552:2	0/1:46,55:32:101:0.545:2
chr2	234526794	rs1042591	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,30:33:65:0.476:2	./.
chr2	234526871	rs1042597	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,6:31:15:0.400:2	0/1:55,29:31:86:0.345:2	./.	./.	./.	./.	./.	./.	./.
chr2	234527118	rs1042605	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,49:29:93:0.527:2	./.	0/1:46,50:29:97:0.521:2	0/1:67,48:29:115:0.417:2	./.	./.	0/1:58,57:29:115:0.496:2
chr2	234527183	rs17863762	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,25:30:67:0.373:2	./.	./.	./.	./.	./.
chr2	234545294	rs11683356	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,52:32:109:0.477:2	./.	./.
chr2	234545802	rs139087628	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,6:32:168:0.036:2	./.	0/1:155,5:32:161:0.031:2	./.
chr2	234545816	rs140439109	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,6:32:147:0.041:2	./.	0/1:130,5:30:136:0.037:2	./.
chr2	234545861	rs17854828	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,13:32:58:0.224:2	./.	0/1:29,25:32:54:0.463:2	./.	./.	./.	0/1:68,56:33:124:0.452:2
chr2	234580588	rs145084767	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,33:32:81:0.407:2	0/1:19,22:31:41:0.537:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	234581384	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,5:30:137:0.036:2	./.	./.	./.
chr2	234590616	rs7577677	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,31:30:80:0.388:2	0/1:36,9:31:45:0.200:2	./.	0/1:45,63:30:108:0.583:2	0/1:54,55:30:109:0.505:2	0/1:64,59:30:123:0.480:2	./.	0/1:80,60:31:140:0.429:2	0/1:0,146:31:146:1.00:2	0/1:55,57:31:112:0.509:2	./.
chr2	234590970	rs17868323	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,12:32:35:0.343:2	0/1:10,6:34:16:0.375:2	./.	0/1:32,6:32:38:0.158:2	0/1:0,12:29:12:1.00:2	0/1:29,4:32:33:0.121:2	0/1:11,5:29:16:0.313:2	0/1:1,15:31:16:0.938:2	0/1:0,20:31:20:1.00:2	0/1:19,6:33:25:0.240:2	0/1:26,14:31:40:0.350:2
chr2	234590974	rs17863778	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,10:31:34:0.294:2	0/1:12,3:31:15:0.200:2	./.	0/1:30,6:31:36:0.167:2	0/1:0,12:31:12:1.00:2	0/1:29,4:31:33:0.121:2	0/1:11,5:28:16:0.313:2	0/1:1,14:30:15:0.933:2	0/1:0,20:31:20:1.00:2	0/1:18,5:32:23:0.217:2	0/1:27,13:31:40:0.325:2
chr2	234590975	rs17868324	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,10:31:32:0.313:2	0/1:12,3:32:15:0.200:2	./.	0/1:30,6:31:36:0.167:2	0/1:0,12:31:12:1.00:2	0/1:29,4:31:33:0.121:2	0/1:11,5:26:16:0.313:2	0/1:1,14:31:15:0.933:2	0/1:0,20:31:20:1.00:2	0/1:18,5:32:23:0.217:2	0/1:26,13:30:39:0.333:2
chr2	234591205	rs11692021	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:68,75:29:143:0.524:2	0/1:42,35:29:77:0.455:2	./.	0/1:79,81:29:160:0.506:2	0/1:26,45:27:71:0.634:2	0/1:57,59:29:116:0.509:2	./.	0/1:70,102:29:172:0.593:2	0/1:2,160:29:162:0.988:2	0/1:54,66:28:120:0.550:2	./.
chr2	234591339	rs17864686	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,11:31:36:0.306:2	./.	0/1:26,13:30:39:0.333:2	./.	./.	./.	0/1:32,28:31:60:0.467:2
chr2	234601669	rs6759892	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,23:29:58:0.397:2	0/1:21,22:29:43:0.512:2	./.	0/1:48,32:30:80:0.400:2	0/1:30,30:29:60:0.500:2	0/1:26,36:29:62:0.581:2	./.	0/1:40,28:30:68:0.412:2	0/1:0,79:30:79:1.00:2	0/1:30,36:30:66:0.545:2	./.
chr2	234601965	rs1105880	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,36:33:63:0.571:2	0/1:14,19:32:33:0.576:2	./.	0/1:34,21:33:55:0.382:2	0/1:22,16:32:38:0.421:2	./.	./.	0/1:31,22:33:53:0.415:2	0/1:0,53:33:53:1.00:2	0/1:26,20:33:46:0.435:2	./.
chr2	234602191	rs2070959	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:45,36:33:81:0.444:2	0/1:17,25:33:42:0.595:2	./.	0/1:63,49:33:112:0.438:2	0/1:47,46:33:93:0.495:2	./.	./.	0/1:56,49:33:105:0.467:2	0/1:0,115:34:115:1.00:2	0/1:48,38:33:86:0.442:2	./.
chr2	234602202	rs1105879	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:50,39:32:89:0.438:2	0/1:18,24:32:42:0.571:2	./.	0/1:59,51:33:110:0.464:2	0/1:42,46:33:88:0.523:2	./.	./.	0/1:58,47:32:105:0.448:2	0/1:2,128:33:130:0.985:2	0/1:57,41:33:98:0.418:2	./.
chr2	234621780	rs3755323	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,28:30:78:0.364:2
chr2	234621787	rs3755322	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,28:32:79:0.354:2
chr2	234621825	rs3755321	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,42:29:114:0.368:2
chr2	234622061	rs3755320	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:32:199:0.020:2	./.	./.	./.	./.	0/1:114,79:32:193:0.409:2
chr2	234622110	rs12475068	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,86:32:182:0.475:2
chr2	234622282	rs17868333	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,67:31:169:0.396:2
chr2	234622294	rs17863790	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,58:32:163:0.356:2
chr2	234622310	rs17862867	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,51:30:162:0.315:2
chr2	234622379	rs2012736	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,12:31:118:0.102:2
chr2	234622382	rs17862868	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,13:33:114:0.114:2
chr2	234622412	rs3892170	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,17:28:106:0.160:2
chr2	234622420	rs17862869	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,19:29:106:0.179:2
chr2	234622429	rs2012734	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:50,51:31:101:0.505:2	0/1:36,34:32:70:0.486:2	./.	0/1:61,69:32:130:0.531:2	0/1:63,54:30:117:0.462:2	0/1:72,53:30:125:0.424:2	./.	0/1:1,141:31:142:0.993:2	0/1:0,121:32:121:1.00:2	0/1:49,58:31:107:0.542:2	0/1:77,22:31:99:0.222:2
chr2	234622486	rs149208140	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,39:31:85:0.459:2	./.	./.	./.	./.
chr2	234627536	rs6755571	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,80:30:159:0.503:2	./.	./.	./.	./.	./.
chr2	234627608	rs2011425	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,21:29:49:0.429:2
chr2	234627846	rs147555582	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.	./.	./.
chr2	234627914	rs12468274	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:34:193:0.021:2	./.	./.	./.	0/1:116,79:33:195:0.405:2
chr2	234627937	rs2011404	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:94,89:30:184:0.486:2	0/1:94,93:30:187:0.497:2	0/1:19,17:30:36:0.472:2	0/1:1,190:30:191:0.995:2	0/1:0,175:29:175:1.00:2	0/1:103,82:30:185:0.443:2	0/1:105,91:30:196:0.464:2	0/1:0,182:30:182:1.00:2	0/1:0,186:31:186:1.00:2	0/1:110,79:30:190:0.418:2	0/1:110,80:30:190:0.421:2
chr2	234628225	rs112157197	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:157,4:34:162:0.025:2	./.	./.	./.	./.	./.	./.
chr2	234628249	rs138347224	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,6:32:148:0.041:2
chr2	234628270	rs3732217	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,45:30:107:0.421:2
chr2	234637803	rs3821242	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:86,56:27:142:0.394:2	0/1:48,49:30:98:0.505:2	./.	0/1:103,81:30:184:0.440:2	0/1:93,83:31:176:0.472:2	0/1:86,79:30:165:0.479:2	./.	0/1:94,77:30:172:0.450:2	0/1:1,143:30:144:0.993:2	0/1:91,65:29:156:0.417:2	0/1:76,69:30:145:0.476:2
chr2	234637853	rs6706232	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:72,48:31:120:0.400:2	0/1:42,40:32:82:0.488:2	./.	0/1:79,65:30:144:0.451:2	0/1:102,72:30:174:0.414:2	0/1:55,54:30:109:0.495:2	./.	0/1:2,131:31:133:0.985:2	0/1:1,136:32:137:0.993:2	0/1:82,54:30:136:0.397:2	0/1:63,61:31:125:0.492:2
chr2	234637912	rs6431625	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,34:32:77:0.442:2	0/1:23,33:32:56:0.589:2	./.	0/1:61,55:32:116:0.474:2	0/1:86,60:31:146:0.411:2	0/1:51,42:32:94:0.452:2	./.	0/1:5,127:32:132:0.962:2	0/1:1,86:32:87:0.989:2	0/1:52,41:31:93:0.441:2	./.
chr2	234638006	rs17868336	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,47:30:102:0.461:2	./.	./.	./.	./.	./.
chr2	234638168	rs146432524	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,94:33:160:0.588:2	./.	./.	0/1:170,4:32:174:0.023:2	./.	./.	./.
chr2	234638249	rs7574296	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:85,102:29:187:0.545:2	0/1:57,65:29:122:0.533:2	./.	0/1:108,78:29:186:0.419:2	0/1:87,79:30:166:0.476:2	0/1:90,93:29:183:0.508:2	./.	0/1:2,175:29:177:0.989:2	0/1:2,184:30:186:0.989:2	0/1:113,83:29:196:0.423:2	0/1:95,81:29:176:0.460:2
chr2	234638522	rs115983652	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,11:29:156:0.071:2
chr2	234638547	rs149324549	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,9:30:136:0.066:2
chr2	234638580	rs45449995	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,44:30:98:0.449:2	0/1:29,29:30:58:0.500:2	./.	./.	./.	./.	./.	./.	0/1:73,57:30:130:0.438:2	./.	./.
chr2	234652308	rs34622615	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,38:30:59:0.644:2	0/1:16,16:31:32:0.500:2	./.	./.	./.	./.	./.	./.	0/1:19,14:30:33:0.424:2	./.	./.
chr2	234652347	rs13009407	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,34:28:67:0.507:2	0/1:27,24:26:51:0.471:2	./.	./.	0/1:26,15:25:41:0.366:2	0/1:33,22:27:55:0.400:2	0/1:27,28:26:55:0.509:2	./.
chr2	234652482	rs62191918	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,40:31:93:0.430:2
chr2	234652642	rs76063448	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:31:7:0.571:2	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.
chr2	234676520	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:31:79:0.051:2	./.
chr2	234676992	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,52:28:108:0.481:2	./.	./.	./.	./.	./.	./.
chr2	234688036	rs6431631	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,15:30:30:0.500:2	0/1:2,179:31:181:0.989:2	0/1:1,143:31:144:0.993:2	0/1:86,88:31:174:0.506:2	0/1:89,58:30:147:0.395:2	0/1:0,160:31:160:1.00:2	0/1:0,180:31:180:1.00:2	0/1:76,54:31:130:0.415:2	0/1:1,190:32:191:0.995:2
chr2	234688327	rs17863803	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,101:33:197:0.513:2	./.	./.	0/1:88,91:34:179:0.508:2
chr2	234688360	rs17868345	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,77:32:167:0.461:2	./.	./.	./.	./.
chr2	234702459	rs1500481	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,14:32:35:0.400:2	0/1:2,145:32:147:0.986:2	0/1:0,181:32:181:1.00:2	./.	0/1:92,83:32:175:0.474:2	0/1:85,67:32:152:0.441:2	0/1:95,65:33:160:0.406:2	0/1:77,58:31:135:0.430:2	0/1:61,68:32:130:0.527:2
chr2	234703136	rs6431634	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,37:29:78:0.474:2	0/1:1,82:27:83:0.988:2	./.	0/1:68,26:29:94:0.277:2	0/1:47,36:27:85:0.434:2	0/1:43,20:30:63:0.317:2	0/1:40,22:28:64:0.355:2	0/1:33,24:27:57:0.421:2
chr2	234704318	rs2361503	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,88:32:153:0.575:2	0/1:0,179:32:179:1.00:2	./.	0/1:95,102:32:197:0.518:2	0/1:68,80:32:148:0.541:2	0/1:93,74:34:167:0.443:2	0/1:40,49:32:89:0.551:2	0/1:67,49:31:116:0.422:2
chr2	234704607	rs1076454	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,82:30:192:0.427:2	./.	./.	0/1:90,106:30:197:0.541:2	./.	./.	./.	./.
chr2	234704690	rs759173	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,45:28:106:0.425:2	0/1:57,41:27:98:0.418:2	0/1:0,17:28:17:1.00:2	0/1:1,109:27:110:0.991:2	0/1:0,146:27:146:1.00:2	./.	0/1:0,139:27:139:1.00:2	0/1:0,126:27:126:1.00:2	0/1:0,110:28:110:1.00:2	0/1:77,60:28:137:0.438:2	0/1:0,107:27:107:1.00:2
chr2	234707460	rs11563247	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,73:30:146:0.500:2	./.	0/1:61,55:30:116:0.474:2	./.	./.	0/1:68,76:31:144:0.528:2	./.	0/1:89,80:30:170:0.473:2
chr2	234708428	rs13013882	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,42:30:76:0.553:2	0/1:34,18:31:52:0.346:2	0/1:0,5:30:5:1.00:2	0/1:0,93:29:93:1.00:2	0/1:52,37:28:89:0.416:2	0/1:0,102:28:102:1.00:2	0/1:0,74:28:74:1.00:2	0/1:0,83:29:83:1.00:2	0/1:1,116:30:117:0.991:2	0/1:45,20:29:65:0.308:2	0/1:0,96:29:96:1.00:2
chr2	234708868	rs11563246	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,31:32:63:0.492:2	./.	./.	./.
chr2	234710831	rs10929306	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:30:9:0.444:2	0/1:29,27:32:56:0.482:2	0/1:38,22:32:60:0.367:2	0/1:49,20:32:69:0.290:2	0/1:67,24:32:93:0.264:2	./.	./.	./.	./.
chr2	234712127	rs182734868	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	234713706	rs4430949	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:32:10:0.400:2	0/1:24,19:32:43:0.442:2	0/1:26,18:33:44:0.409:2	0/1:11,23:31:34:0.676:2	0/1:10,18:33:28:0.643:2	./.	./.	./.	./.
chr2	234713751	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,6:32:70:0.086:2	./.	./.	./.
chr2	234716426	rs11563241	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,9:32:25:0.360:2	0/1:111,71:32:182:0.390:2	0/1:109,80:32:189:0.423:2	0/1:108,76:32:184:0.413:2	0/1:112,83:33:195:0.426:2	./.	./.	./.	./.
chr2	234725427	rs115274498	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,24:32:67:0.364:2	./.	./.	./.	./.
chr2	234725502	rs726016	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:29:43:1.00:2	0/1:0,30:28:30:1.00:2	0/1:0,5:30:5:1.00:2	0/1:32,30:29:63:0.484:2	0/1:29,12:28:41:0.293:2	0/1:0,63:30:63:1.00:2	0/1:1,65:29:66:0.985:2	0/1:0,78:29:78:1.00:2	0/1:0,70:29:70:1.00:2	0/1:24,18:28:42:0.429:2	0/1:42,40:29:82:0.488:2
chr2	234727410	rs11563102	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,21:31:51:0.412:2	./.	./.	./.	./.	./.	./.	./.
chr2	234727986	rs6754859	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:44,25:30:69:0.362:2	0/1:13,26:31:39:0.667:2	0/1:0,17:30:17:1.00:2	./.	./.	0/1:1,102:31:103:0.990:2	0/1:109,81:31:190:0.426:2	0/1:1,170:31:171:0.994:2	0/1:1,131:32:132:0.992:2	0/1:58,53:31:111:0.477:2	0/1:54,52:32:106:0.491:2
chr2	234728078	rs1500480	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:40,36:30:76:0.474:2	0/1:10,11:32:21:0.524:2	0/1:0,13:33:13:1.00:2	./.	0/1:71,57:31:128:0.445:2	0/1:3,97:32:100:0.970:2	0/1:0,130:31:130:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,115:33:115:1.00:2	0/1:49,49:32:98:0.500:2	0/1:35,32:32:67:0.478:2
chr2	234730807	rs6734083	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,34:31:72:0.472:2	./.	0/1:37,35:29:72:0.486:2	./.	./.	./.	./.
chr2	234731582	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:33:136:0.029:2	./.
chr2	234732311	rs17868361	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,69:31:69:1.00:2	0/1:37,45:31:82:0.549:2	0/1:41,23:30:64:0.359:2	./.	./.	./.	0/1:23,23:31:46:0.500:2	0/1:17,26:31:43:0.605:2
chr2	234732317	rs11676792	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,58:32:59:1.00:2	0/1:0,71:32:71:1.00:2	0/1:38,23:32:61:0.377:2	0/1:28,34:32:62:0.548:2	./.	./.	0/1:19,24:31:43:0.558:2	0/1:0,42:32:42:1.00:2
chr2	234737372	rs7564261	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,52:31:52:1.00:2	0/1:0,70:32:70:1.00:2	0/1:24,35:31:59:0.593:2	0/1:24,30:31:54:0.556:2	0/1:24,29:31:53:0.547:2	./.	0/1:0,51:31:51:1.00:2	./.
chr2	234737380	rs72970235	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,30:31:49:0.612:2	./.	./.	./.	./.	./.	./.	./.
chr2	234738356	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:30:71:0.056:2	./.	./.	./.	./.	./.
chr2	234740136	rs879665	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,59:31:142:0.415:2	./.	0/1:100,54:31:154:0.351:2	0/1:98,64:31:162:0.395:2	./.	0/1:71,58:32:129:0.450:2	./.
chr2	234740157	rs879664	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,42:31:131:0.321:2	0/1:84,58:30:142:0.408:2	./.	./.	./.
chr2	234741783	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,26:32:61:0.426:2	./.	./.	./.	./.	./.	./.	./.
chr2	234741808	rs2270856	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,43:32:70:0.614:2	./.	./.	./.	./.	0/1:43,25:32:68:0.368:2	./.
chr2	234749258	rs10511	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,51:32:139:0.367:2	0/1:83,75:32:158:0.475:2	./.	./.	./.
chr2	234749354	rs12582	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,27:31:51:0.529:2	0/1:43,42:30:85:0.494:2	./.	./.	./.
chr2	234749780	rs3821238	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,33:32:80:0.413:2	0/1:38,48:32:86:0.558:2	./.	./.	./.
chr2	234749783	rs17863822	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,26:32:61:0.426:2	0/1:14,19:33:33:0.576:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	234750542	rs3732215	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,6:32:15:0.400:2	0/1:3,143:33:148:0.979:2	./.	0/1:0,168:32:168:1.00:2	0/1:91,87:33:178:0.489:2	0/1:70,62:33:132:0.470:2	./.	./.	0/1:88,63:33:151:0.417:2
chr2	234750831	rs3806589	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,57:28:105:0.543:2	0/1:27,24:28:51:0.471:2	0/1:4,7:31:11:0.636:2	0/1:1,100:29:101:0.990:2	0/1:38,39:29:77:0.506:2	0/1:0,95:28:95:1.00:2	0/1:50,35:28:85:0.412:2	0/1:3,115:28:118:0.975:2	./.	0/1:38,45:29:83:0.542:2	0/1:55,47:28:102:0.461:2
chr2	234758500	rs529963	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:32:3:1.00:2	0/1:2,3:32:5:0.600:2	./.	0/1:2,8:31:10:0.800:2	./.	0/1:10,5:32:15:0.333:2	./.	./.	0/1:5,7:33:12:0.583:2	0/1:5,9:32:14:0.643:2
chr2	234761225	rs2286430	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,30:31:30:1.00:2	./.	0/1:1,30:31:31:0.968:2	0/1:34,11:33:45:0.244:2	0/1:22,25:32:47:0.532:2	./.	./.	0/1:57,34:33:93:0.374:2
chr2	234762480	rs626110	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,69:32:135:0.511:2	0/1:32,49:32:81:0.605:2	0/1:6,15:31:21:0.714:2	0/1:1,152:31:153:0.993:2	0/1:87,83:31:170:0.488:2	0/1:0,194:31:194:1.00:2	0/1:0,188:31:188:1.00:2	0/1:98,96:31:195:0.495:2	./.	0/1:74,56:31:131:0.431:2	0/1:1,131:31:132:0.992:2
chr2	234854540	rs13004520	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,28:32:55:0.509:2	./.	./.	0/1:18,21:31:39:0.538:2	./.	./.	./.	./.
chr2	234854550	rs11562975	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:34:10:0.500:2	./.	0/1:30,13:32:43:0.302:2	./.	./.	./.	./.	./.	./.
chr2	234854552	rs17868387	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,31:32:62:0.500:2	./.	./.	0/1:17,22:32:39:0.564:2	./.	./.	./.	./.
chr2	234863788	rs7593557	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,39:31:111:0.351:2	./.	./.	0/1:65,60:31:125:0.480:2	0/1:85,56:31:141:0.397:2	./.	./.	./.
chr2	234905078	rs11563208	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,60:31:117:0.513:2	0/1:47,48:32:95:0.505:2	0/1:14,10:31:24:0.417:2	0/1:95,88:31:183:0.481:2	0/1:103,74:31:177:0.418:2	./.	./.	./.	./.	./.	./.
chr2	234915540	rs11563071	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,37:32:75:0.493:2	./.	./.	./.	./.
chr2	234926008	rs28902237	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:33:11:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	234959703	rs150764101	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,21:32:48:0.438:2	./.
chr2	234967539	rs593668	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,62:32:62:1.00:2	0/1:0,41:32:41:1.00:2	./.	0/1:1,72:31:73:0.986:2	0/1:0,59:31:59:1.00:2	./.	0/1:2,57:32:59:0.966:2	0/1:0,85:32:85:1.00:2	0/1:48,33:33:81:0.407:2	0/1:24,18:33:42:0.429:2	0/1:42,48:31:91:0.533:2
chr2	234978658	rs6716659	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,24:32:60:0.400:2
chr2	235949877	rs3731644	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,10:29:29:0.345:2	./.	0/1:15,15:27:30:0.500:2	./.	./.	./.	./.	./.
chr2	235949920	rs3731645	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,16:28:30:0.533:2	./.	./.	./.	./.	./.	./.	./.
chr2	235950002	rs3731646	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,33:32:73:0.452:2	./.	./.	./.	./.	./.	./.	./.
chr2	235950187	rs1469375	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:30:6:0.500:2	0/1:0,32:28:32:1.00:2	0/1:22,15:29:37:0.405:2	0/1:13,16:25:29:0.552:2	0/1:0,53:28:53:1.00:2	0/1:30,29:29:59:0.492:2	./.	0/1:21,14:29:35:0.400:2	0/1:0,40:29:40:1.00:2
chr2	235950284	rs3731648	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,17:29:60:0.283:2	./.	./.	./.	./.	./.	./.	./.
chr2	235950391	rs35039245	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,12:29:33:0.364:2	./.
chr2	235950451	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,10:31:18:0.556:2	./.
chr2	235951819	rs3795962	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,19:32:20:0.950:2	0/1:0,162:32:162:1.00:2	0/1:0,96:32:96:1.00:2	0/1:78,86:32:164:0.524:2	0/1:0,160:32:160:1.00:2	0/1:93,78:32:171:0.456:2	./.	0/1:55,59:32:114:0.518:2	0/1:0,130:32:130:1.00:2
chr2	236433161	rs62191529	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,9:33:13:0.692:2	./.	./.	0/1:72,43:32:115:0.374:2	0/1:49,63:32:112:0.563:2	0/1:4,133:32:137:0.971:2	./.	0/1:2,83:32:85:0.976:2	0/1:53,42:33:95:0.442:2
chr2	236433187	rs115022664	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,38:28:69:0.551:2
chr2	236617869	rs8178995	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,46:32:94:0.489:2
chr2	236685678	rs62190872	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,52:32:98:0.531:2	0/1:59,71:33:130:0.546:2
chr2	236691982	rs1878154	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:80,66:32:146:0.452:2	0/1:35,37:32:72:0.514:2	0/1:9,8:32:17:0.471:2	./.	./.	0/1:2,127:32:129:0.984:2	0/1:87,55:33:142:0.387:2	./.	./.	./.	./.
chr2	236708166	rs2292708	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:23,17:33:40:0.425:2	0/1:19,8:32:27:0.296:2	0/1:4,3:33:7:0.429:2	./.	./.	0/1:0,57:32:57:1.00:2	0/1:25,21:32:46:0.457:2	./.	./.	./.	./.
chr2	236761396	rs13006916	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:94,85:32:179:0.475:2	0/1:63,59:32:122:0.484:2	0/1:21,17:30:38:0.447:2	./.	./.	0/1:0,158:31:158:1.00:2	0/1:1,148:32:149:0.993:2	./.	0/1:0,160:32:160:1.00:2	0/1:75,55:32:130:0.423:2	./.
chr2	236817542	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:33:104:0.038:2
chr2	236877171	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,7:20:67:0.109:2	./.	./.	./.
chr2	236877183	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,5:25:49:0.102:2	./.	./.	./.	./.	./.
chr2	236957822	rs2034648	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,54:31:110:0.495:2	0/1:58,31:32:89:0.348:2	0/1:1,16:31:17:0.941:2	0/1:65,78:30:143:0.545:2	0/1:122,67:31:190:0.354:2	0/1:103,70:31:173:0.405:2	0/1:178,5:31:183:0.027:2	0/1:91,91:31:182:0.500:2	0/1:2,135:32:137:0.985:2	0/1:71,60:31:131:0.458:2	0/1:85,65:31:150:0.433:2
chr2	237032607	rs11895915	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,23:30:57:0.404:2	0/1:0,61:30:61:1.00:2	./.	./.	0/1:0,38:30:38:1.00:2	./.	./.
chr2	237032703	rs8178994	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,67:32:142:0.472:2	0/1:1,100:31:102:0.990:2	./.	./.	0/1:0,78:33:78:1.00:2	./.	./.
chr2	237075031	rs113549935	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,22:30:56:0.393:2	0/1:18,23:31:41:0.561:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	237076096	rs112186240	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,4:34:5:0.800:2	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:36:5:0.600:2	./.	./.
chr2	237103548	rs10177825	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:41,39:32:80:0.488:2	0/1:34,17:31:51:0.333:2	0/1:8,8:32:16:0.500:2	./.	./.	0/1:62,32:30:94:0.340:2	./.	./.	0/1:52,46:32:98:0.469:2	0/1:73,52:32:125:0.416:2	./.
chr2	237103623	rs10166966	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:53,40:32:93:0.430:2	0/1:32,19:32:51:0.373:2	0/1:8,8:32:16:0.500:2	./.	./.	0/1:89,40:32:129:0.310:2	./.	./.	0/1:62,52:33:114:0.456:2	0/1:77,59:32:136:0.434:2	./.
chr2	237103697	rs10177957	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:30,21:30:51:0.412:2	0/1:19,15:32:34:0.441:2	0/1:6,7:30:13:0.538:2	./.	./.	0/1:66,37:30:103:0.359:2	./.	./.	0/1:34,29:32:63:0.460:2	0/1:46,38:31:84:0.452:2	./.
chr2	237149941	rs6756597	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,56:30:104:0.538:2	0/1:1,72:30:73:0.986:2	0/1:36,32:30:68:0.471:2	0/1:55,42:30:97:0.433:2	0/1:1,121:31:122:0.992:2	./.	0/1:29,38:31:68:0.567:2	./.
chr2	237246905	rs115960780	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,41:30:80:0.513:2	0/1:15,10:30:25:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	237252380	rs188950411	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,17:31:51:0.333:2	./.
chr2	237300677	rs10204742	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,54:33:122:0.443:2	./.
chr2	237374309	rs35432941	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,57:32:104:0.548:2	0/1:54,53:31:107:0.495:2	./.	./.	0/1:86,65:31:151:0.430:2
chr2	237402432	rs143813700	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,26:33:50:0.520:2	./.	./.
chr2	237406091	rs113638946	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:31:8:0.375:2	0/1:34,22:32:56:0.393:2	./.	./.	./.	./.	./.	./.	./.
chr2	237489297	rs35767135	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,42:32:90:0.467:2	0/1:23,31:32:54:0.574:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	237489904	rs1045879	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:65,58:31:123:0.472:2	0/1:56,25:31:81:0.309:2	./.	0/1:99,79:31:178:0.444:2	./.	./.	./.	./.	./.	./.	./.
chr2	237995822	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:128:0.031:2	0/1:145,4:34:149:0.027:2	./.	./.
chr2	237996106	rs6740125	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,40:32:93:0.430:2
chr2	237997230	rs57864418	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,35:31:92:0.380:2
chr2	238005457	rs73999622	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,51:31:99:0.515:2
chr2	238166147	rs4377288	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:15,18:33:33:0.545:2	0/1:9,11:33:20:0.550:2	./.	0/1:0,31:33:31:1.00:2	./.	0/1:15,19:32:34:0.559:2	0/1:14,12:32:26:0.462:2	0/1:7,14:33:21:0.667:2	./.	./.	0/1:0,40:33:40:1.00:2
chr2	238233410	rs4663722	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,14:32:39:0.359:2	./.	./.	./.	0/1:43,14:31:57:0.246:2	./.	./.	0/1:20,20:33:40:0.500:2
chr2	238233483	rs13032404	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,17:28:33:0.515:2	0/1:0,19:29:19:1.00:2	0/1:8,18:30:26:0.692:2	0/1:8,20:29:28:0.714:2	./.	0/1:7,9:32:16:0.563:2	./.
chr2	238243285	rs2270671	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:30,30:32:60:0.500:2	0/1:20,18:32:38:0.474:2	./.	0/1:51,48:32:99:0.485:2	./.	./.	./.	./.	./.	./.	./.
chr2	238243292	rs1131296	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:34,36:31:70:0.514:2	0/1:23,19:32:42:0.452:2	0/1:8,3:30:11:0.273:2	./.	0/1:61,39:31:100:0.390:2	0/1:0,104:31:104:1.00:2	0/1:79,57:32:136:0.419:2	0/1:70,57:31:127:0.449:2	./.	./.	0/1:42,35:32:77:0.455:2
chr2	238243464	rs2270669	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,107:32:107:1.00:2	0/1:0,54:32:54:1.00:2	0/1:14,7:32:21:0.333:2	0/1:2,149:32:151:0.987:2	0/1:0,101:32:101:1.00:2	0/1:0,124:32:125:1.00:2	0/1:0,125:32:125:1.00:2	0/1:67,60:32:127:0.472:2	0/1:0,115:33:115:1.00:2	./.	0/1:72,59:31:131:0.450:2
chr2	238244781	rs11690358	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,34:29:82:0.415:2	0/1:49,53:30:102:0.520:2	./.	0/1:64,59:30:123:0.480:2	./.	0/1:0,78:30:79:1.00:2	./.	./.
chr2	238244923	rs11683438	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,25:31:44:0.568:2	0/1:21,22:31:43:0.512:2	./.	0/1:26,18:32:44:0.409:2	./.	0/1:0,41:32:41:1.00:2	./.	./.
chr2	238244963	rs6728818	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,48:27:48:1.00:2	0/1:0,24:28:24:1.00:2	./.	0/1:0,45:29:45:1.00:2	0/1:0,51:27:51:1.00:2	0/1:0,46:28:46:1.00:2	0/1:0,48:28:48:1.00:2	0/1:16,23:28:39:0.590:2	0/1:0,50:29:50:1.00:2	./.	0/1:27,17:27:44:0.386:2
chr2	238249108	rs61729844	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,31:30:68:0.456:2	0/1:17,29:29:46:0.630:2	./.	0/1:24,25:31:49:0.510:2	./.	0/1:1,53:31:54:0.981:2	./.	./.
chr2	238249630	rs4433949	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:68,95:32:163:0.583:2	0/1:68,53:32:121:0.438:2	0/1:16,11:31:27:0.407:2	./.	0/1:97,94:31:191:0.492:2	0/1:2,193:31:195:0.990:2	0/1:107,88:31:195:0.451:2	0/1:94,98:32:192:0.510:2	./.	./.	0/1:111,81:32:192:0.422:2
chr2	238249717	rs34558385	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,73:28:137:0.537:2	0/1:80,83:28:164:0.509:2	./.	0/1:62,86:28:150:0.581:2	./.	./.	./.	./.
chr2	238253149	rs2646258	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:104,75:32:179:0.419:2	0/1:81,57:32:138:0.413:2	./.	0/1:98,81:32:179:0.453:2	./.	./.	./.	./.	./.	./.	./.
chr2	238253152	rs34181055	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,85:31:172:0.494:2	0/1:113,61:32:174:0.351:2	./.	./.	./.	0/1:90,94:32:184:0.511:2	./.	./.
chr2	238253403	rs150165484	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,8:33:12:0.667:2	./.	./.	./.	./.	./.
chr2	238257013	rs2646265	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:10,20:32:30:0.667:2	0/1:9,11:32:20:0.550:2	./.	0/1:19,10:32:29:0.345:2	./.	./.	./.	./.	./.	./.	./.
chr2	238258814	rs3790993	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:41,30:32:71:0.423:2	0/1:21,11:34:32:0.344:2	0/1:5,3:32:8:0.375:2	./.	0/1:30,23:32:53:0.434:2	0/1:0,49:32:49:1.00:2	0/1:26,35:31:61:0.574:2	0/1:55,32:32:87:0.368:2	./.	./.	0/1:19,19:30:38:0.500:2
chr2	238267717	rs2646254	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:63,44:31:107:0.411:2	0/1:40,38:31:78:0.487:2	./.	0/1:49,55:30:104:0.529:2	./.	./.	./.	./.	./.	./.	./.
chr2	238277573	rs2645774	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,22:27:43:0.524:2	0/1:12,16:31:28:0.571:2	./.	0/1:19,22:29:42:0.537:2	0/1:16,7:24:23:0.304:2	./.	./.	0/1:22,10:29:32:0.313:2	0/1:17,22:27:39:0.564:2	./.	./.
chr2	238277795	rs2646260	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,13:31:19:0.684:2	0/1:6,5:31:11:0.455:2	./.	0/1:13,11:31:24:0.458:2	0/1:13,10:30:23:0.435:2	./.	0/1:11,7:28:18:0.389:2	0/1:14,10:32:24:0.417:2	0/1:12,11:31:23:0.478:2	./.	./.
chr2	238280330	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,14:33:26:0.538:2
chr2	238280553	rs35114079	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,23:30:65:0.354:2	./.	./.	./.	./.	./.	./.	./.
chr2	238283605	rs12622093	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,16:31:41:0.390:2	0/1:7,14:32:21:0.667:2	./.	0/1:37,19:30:56:0.339:2	0/1:31,24:30:55:0.436:2	./.	./.	0/1:34,26:31:60:0.433:2	0/1:28,11:32:39:0.282:2	./.	./.
chr2	238290066	rs112896869	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,8:32:11:0.727:2	./.	./.	./.
chr2	238303832	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:31:47:0.085:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	238343299	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:35:67:0.060:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	238427194	rs3751109	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,104:29:176:0.591:2	./.	0/1:101,85:30:186:0.457:2	./.	./.	./.
chr2	238427251	rs3751107	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,60:31:117:0.513:2	./.	0/1:56,49:30:105:0.467:2	./.	./.	./.
chr2	238434249	rs2292881	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,56:30:56:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr2	238434434	rs11883500	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,4:30:74:0.054:2	./.	0/1:37,27:30:64:0.422:2	./.	0/1:27,34:31:61:0.557:2	./.	./.	./.
chr2	238443226	rs2292884	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,148:29:151:0.980:2	./.	0/1:96,76:30:173:0.442:2	./.	0/1:97,95:29:192:0.495:2	./.	./.	./.
chr2	238449007	rs3817362	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,103:30:105:0.981:2	./.	./.	./.	./.	./.	./.	./.
chr2	238449023	rs3817363	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,104:29:106:0.981:2	./.	./.	./.	./.	./.	./.	./.
chr2	238449107	rs2271809	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,42:31:42:1.00:2	./.	0/1:38,39:32:77:0.506:2	./.	0/1:35,42:32:77:0.545:2	./.	./.	./.
chr2	238451284	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,58:32:114:0.509:2	./.	./.	./.
chr2	238483164	rs6766	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:32:8:0.375:2	./.	./.	0/1:42,26:31:68:0.382:2	./.	0/1:60,44:31:105:0.423:2	./.	./.	./.
chr2	238483671	rs59945834	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:32:8:0.375:2	./.	./.	./.	./.	0/1:38,84:31:122:0.689:2	./.	./.	./.
chr2	238483729	rs2280289	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:34:11:0.455:2	./.	./.	./.	./.	0/1:74,72:32:146:0.493:2	./.	./.	./.
chr2	238484028	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:124,4:34:128:0.031:2	./.	./.	./.	./.	./.	./.
chr2	238485251	rs72990117	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:25:11:0.455:2	./.	./.	./.	./.	0/1:61,60:29:121:0.496:2	./.	./.	./.
chr2	238485256	rs75983679	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,62:30:113:0.554:2	./.	./.	./.	./.	./.
chr2	238486767	rs11542159	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,23:30:60:0.383:2	./.	./.	./.	./.	./.
chr2	238494136	rs2325809	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,5:23:35:0.143:2	./.	./.	./.
chr2	238494161	rs13414922	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,8:30:12:0.667:2	0/1:26,54:30:80:0.675:2	./.	0/1:24,49:30:73:0.671:2	./.	./.	./.	./.	./.
chr2	238494681	rs34052613	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,61:32:155:0.394:2	./.	./.	./.
chr2	238494742	rs3751112	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:32:10:0.400:2	0/1:50,53:32:103:0.515:2	./.	0/1:39,35:30:74:0.473:2	./.	./.	./.	./.	./.
chr2	238499866	rs114742872	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,14:29:80:0.175:2	./.	0/1:95,21:29:116:0.181:2	./.	./.	./.	0/1:65,7:31:72:0.097:2	./.
chr2	238499874	rs2292870	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,36:32:133:0.271:2	./.	0/1:73,37:32:110:0.336:2	./.
chr2	238500642	rs10084167	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,16:31:27:0.593:2	./.	0/1:4,10:31:14:0.714:2	./.	0/1:12,7:30:19:0.368:2	./.	0/1:5,4:32:9:0.444:2	./.
chr2	238500653	rs191483018	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,6:31:9:0.667:2	./.	./.	./.	./.	./.	./.
chr2	238503559	rs2325806	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,12:28:37:0.324:2	./.	0/1:3,126:29:129:0.977:2	0/1:100,60:29:161:0.375:2	0/1:126,51:29:178:0.288:2	0/1:84,99:29:183:0.541:2	0/1:108,77:29:185:0.416:2	0/1:94,76:29:170:0.447:2	0/1:105,77:29:182:0.423:2
chr2	238503561	rs75477617	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,11:30:37:0.306:2	./.	0/1:80,51:29:131:0.389:2	0/1:101,61:29:162:0.377:2	0/1:129,50:29:179:0.279:2	./.	./.	./.	./.
chr2	238503624	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,6:32:108:0.056:2
chr2	238626378	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:32:113:0.035:2	./.	./.	./.	./.
chr2	238641002	rs6720481	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:112,63:32:175:0.360:2	./.	./.	./.	./.	./.	./.
chr2	238642460	rs201910589	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,48:32:87:0.552:2	./.
chr2	238643907	rs3769078	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:30:12:0.667:2	./.	./.	./.	./.	./.	./.	0/1:34,22:31:56:0.393:2	./.
chr2	238668783	rs3213869	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,26:30:60:0.433:2	./.	./.	./.	./.	./.	./.	./.
chr2	238668802	rs3213868	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,8:31:18:0.444:2	0/1:35,28:30:63:0.444:2	./.	./.	./.	./.	./.	0/1:35,34:30:69:0.493:2	./.
chr2	238671290	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:34:186:0.022:2	./.	./.
chr2	238671328	rs868119	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,10:34:21:0.476:2	./.	./.	./.	./.	./.	./.	0/1:110,83:33:194:0.430:2	./.
chr2	238672425	rs11680012	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,74:29:155:0.477:2	./.	./.	./.	./.	./.	./.	./.
chr2	238672703	rs3739038	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:33:10:0.400:2	0/1:55,49:33:104:0.471:2	./.	./.	./.	./.	./.	0/1:41,39:32:80:0.488:2	./.
chr2	238729962	rs185367509	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,11:29:39:0.282:2	./.	./.	./.	./.	./.
chr2	238733016	rs4663795	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,7:32:15:0.467:2	./.	./.	./.	./.	./.	./.	0/1:54,20:32:74:0.270:2	./.
chr2	238820379	rs61758799	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,91:31:160:0.569:2	./.	./.	./.	./.	./.	./.
chr2	238820380	rs61752232	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,48:33:107:0.449:2	0/1:42,27:32:69:0.391:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	238903399	rs12615308	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,50:30:112:0.446:2	0/1:80,34:31:114:0.298:2	./.	0/1:49,40:31:89:0.449:2	0/1:55,45:31:100:0.450:2	./.
chr2	238911983	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.	./.	./.	./.
chr2	238969964	rs2250185	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:28,18:32:46:0.391:2	0/1:18,12:31:30:0.400:2	./.	./.	0/1:41,11:29:52:0.212:2	0/1:30,24:29:54:0.444:2	0/1:30,20:30:50:0.400:2	./.	0/1:23,31:31:54:0.574:2	0/1:34,23:28:57:0.404:2	./.
chr2	238990388	rs3210400	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:25:7:0.429:2	0/1:0,104:31:104:1.00:2	0/1:80,79:31:159:0.497:2	./.	0/1:64,72:31:136:0.529:2	0/1:57,64:30:121:0.529:2	./.	0/1:62,40:31:102:0.392:2	0/1:42,48:31:90:0.533:2
chr2	238991663	rs112310414	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,11:31:16:0.688:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	238991733	rs2243417	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:29,33:32:62:0.532:2	0/1:22,16:32:38:0.421:2	./.	./.	0/1:36,39:32:75:0.520:2	0/1:35,35:31:70:0.500:2	0/1:26,31:31:57:0.544:2	./.	0/1:39,25:32:64:0.391:2	0/1:34,13:31:47:0.277:2	./.
chr2	238991796	rs2278742	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,68:29:137:0.496:2	0/1:41,33:30:74:0.446:2	0/1:1,15:28:17:0.938:2	0/1:3,141:29:144:0.979:2	0/1:66,67:28:133:0.504:2	0/1:79,83:28:162:0.512:2	0/1:91,61:29:152:0.401:2	0/1:2,146:29:149:0.986:2	./.	0/1:70,58:29:128:0.453:2	0/1:95,73:28:169:0.435:2
chr2	238999883	rs1128552	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:73,67:30:140:0.479:2	0/1:65,41:29:106:0.387:2	0/1:14,7:31:21:0.333:2	./.	./.	0/1:104,95:30:199:0.477:2	./.	0/1:99,89:30:188:0.473:2	0/1:105,83:31:188:0.441:2	./.	0/1:109,83:29:192:0.432:2
chr2	239006879	rs12993309	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,11:33:20:0.550:2	./.	0/1:4,12:32:16:0.750:2
chr2	239006891	rs35544137	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,17:29:27:0.630:2	./.	./.	./.	./.	./.	./.	./.
chr2	239007991	rs15787	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,3:32:9:0.333:2	0/1:0,61:31:61:1.00:2	0/1:26,20:31:46:0.435:2	./.	0/1:23,20:32:43:0.465:2	0/1:24,23:31:47:0.489:2	0/1:30,31:33:61:0.508:2	0/1:23,28:33:51:0.549:2	0/1:0,80:32:81:1.00:2
chr2	239009336	rs61744770	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr2	239010623	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:26:48:0.083:2	./.	./.
chr2	239010690	rs34878344	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,7:31:11:0.636:2	./.	./.
chr2	239010719	rs36066915	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:28:3:1.00:2	./.	./.	./.	0/1:7,4:30:11:0.364:2	0/1:0,6:32:6:1.00:2	./.	./.
chr2	239016539	rs935415	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,145:33:145:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,27:31:27:1.00:2	0/1:1,157:33:160:0.994:2	0/1:107,89:32:196:0.454:2	0/1:0,171:32:171:1.00:2	0/1:116,74:32:190:0.389:2	0/1:1,174:32:175:0.994:2	0/1:0,176:33:176:1.00:2	0/1:94,73:32:167:0.437:2	0/1:1,155:32:157:0.994:2
chr2	239025630	rs11904159	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,48:26:100:0.480:2	./.	0/1:56,47:27:103:0.456:2	./.	./.	./.	./.
chr2	239025645	rs11897736	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,38:30:82:0.463:2	./.	0/1:37,29:30:66:0.439:2	./.	./.	./.	./.
chr2	239036270	rs13382446	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,88:32:196:0.449:2	./.	0/1:122,70:32:192:0.365:2	./.	./.	./.	./.
chr2	239037438	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,13:31:15:0.867:2	./.	./.	./.
chr2	239038912	rs57813708	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,53:32:108:0.491:2	./.	0/1:46,29:32:75:0.387:2
chr2	239039057	rs13033248	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,2:33:3:0.667:2	0/1:0,2:33:2:1.00:2	./.	0/1:1,3:31:4:0.750:2	0/1:6,3:33:9:0.333:2	./.	./.	./.	./.	./.	./.
chr2	239039075	rs13006204	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:3,4:33:7:0.571:2	0/1:0,2:33:2:1.00:2	./.	0/1:1,4:31:5:0.800:2	./.	./.	./.	0/1:1,2:32:3:0.667:2	0/1:4,2:35:6:0.333:2	0/1:1,2:32:3:0.667:2	./.
chr2	239039183	rs73102303	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,17:32:30:0.567:2	./.	./.	./.	./.
chr2	239039312	rs76758152	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,3:29:3:1.00:2	./.	./.	./.	./.	./.	./.
chr2	239039637	rs4663845	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:24:4:1.00:2	0/1:0,3:26:3:1.00:2	./.	./.	0/1:4,9:27:13:0.692:2	0/1:9,6:28:15:0.400:2	0/1:0,6:27:6:1.00:2	0/1:6,5:28:11:0.455:2	./.	./.	./.
chr2	239039841	rs10172220	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,6:27:6:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	239039896	rs10182906	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,45:30:45:1.00:2	0/1:0,29:31:29:1.00:2	./.	0/1:33,29:30:62:0.468:2	0/1:40,53:30:93:0.570:2	0/1:18,40:30:58:0.690:2	0/1:0,83:30:83:1.00:2	0/1:42,50:30:92:0.543:2	0/1:36,42:31:78:0.538:2	0/1:14,15:30:29:0.517:2	0/1:17,15:28:32:0.469:2
chr2	239039981	rs149541007	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,42:32:91:0.462:2	./.	./.	./.	./.	./.	./.	./.
chr2	239040187	rs12692215	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	0/1:0,5:31:5:1.00:2	./.	./.	./.	0/1:5,9:33:14:0.643:2	0/1:1,7:33:8:0.875:2	0/1:6,5:33:11:0.455:2	0/1:13,16:32:29:0.552:2	0/1:1,4:33:5:0.800:2	./.
chr2	239040218	rs73102309	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.
chr2	239040343	rs73102311	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,34:31:87:0.391:2	./.	./.	./.	./.
chr2	239049540	rs2241985	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,17:31:34:0.500:2	0/1:7,8:31:15:0.533:2	./.	0/1:18,11:32:29:0.379:2	0/1:15,5:32:20:0.250:2	./.	./.	0/1:9,10:32:19:0.526:2	0/1:0,32:33:32:1.00:2	0/1:10,12:30:22:0.545:2	0/1:5,10:31:15:0.667:2
chr2	239049602	rs147827992	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,31:29:87:0.356:2	0/1:20,17:31:37:0.459:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	239049822	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,6:30:96:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr2	239050033	rs12692216	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:26:5:0.600:2	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.
chr2	239051550	rs935411	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:29:102:1.00:2	0/1:0,68:29:68:1.00:2	0/1:15,12:28:27:0.444:2	0/1:1,178:30:179:0.994:2	0/1:102,86:29:188:0.457:2	0/1:99,86:29:185:0.465:2	0/1:0,120:29:120:1.00:2	0/1:114,78:28:192:0.406:2	0/1:1,176:30:177:0.994:2	0/1:0,149:30:149:1.00:2	0/1:0,119:29:120:1.00:2
chr2	239059484	rs7605194	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,25:31:56:0.446:2	0/1:11,14:30:25:0.560:2	./.	0/1:0,67:30:67:1.00:2	0/1:102,33:30:135:0.244:2	0/1:44,31:31:75:0.413:2	0/1:41,13:28:54:0.241:2	0/1:78,51:29:129:0.395:2	0/1:0,66:31:66:1.00:2	0/1:30,5:31:35:0.143:2	0/1:19,12:31:31:0.387:2
chr2	239077013	rs192936436	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,59:31:135:0.437:2	./.	./.	./.	./.	./.	./.	./.
chr2	239079542	rs2278737	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:38,39:32:77:0.506:2	0/1:19,29:32:48:0.604:2	0/1:3,7:34:10:0.700:2	./.	0/1:51,53:32:104:0.510:2	0/1:51,62:32:113:0.549:2	0/1:34,35:33:69:0.507:2	0/1:75,62:32:137:0.453:2	./.	0/1:49,56:32:105:0.533:2	./.
chr2	239098594	rs34371548	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,31:33:85:0.365:2	./.	./.	./.	./.
chr2	239133980	rs7558525	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,32:32:68:0.471:2	0/1:19,16:32:35:0.457:2	./.	0/1:41,40:31:81:0.494:2	0/1:21,33:31:54:0.611:2	0/1:0,87:31:87:1.00:2	0/1:30,23:31:53:0.434:2	0/1:1,72:32:73:0.986:2	0/1:0,71:32:71:1.00:2	./.	0/1:16,21:31:37:0.568:2
chr2	239134056	rs7572285	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,28:31:62:0.452:2	0/1:14,10:29:24:0.417:2	./.	0/1:76,40:32:116:0.345:2	0/1:60,54:31:114:0.474:2	0/1:0,96:31:96:1.00:2	0/1:82,32:31:114:0.281:2	0/1:4,86:32:90:0.956:2	0/1:1,89:32:90:0.989:2	./.	0/1:0,78:31:78:1.00:2
chr2	239134063	rs7584376	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,27:31:63:0.429:2	0/1:13,10:32:23:0.435:2	./.	0/1:72,39:31:111:0.351:2	0/1:57,51:31:108:0.472:2	0/1:1,91:30:92:0.989:2	0/1:75,33:30:108:0.306:2	0/1:3,89:31:92:0.967:2	0/1:0,93:32:93:1.00:2	./.	0/1:41,35:31:76:0.461:2
chr2	239134138	rs7572392	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,8:31:18:0.444:2	0/1:6,5:32:11:0.455:2	./.	0/1:23,9:32:32:0.281:2	0/1:16,13:30:29:0.448:2	0/1:0,28:29:28:1.00:2	0/1:20,8:31:28:0.286:2	0/1:3,27:31:30:0.900:2	0/1:0,28:31:28:1.00:2	./.	0/1:27,17:29:44:0.386:2
chr2	239139883	rs13425452	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,31:32:66:0.470:2	0/1:21,13:33:34:0.382:2	0/1:3,4:32:7:0.571:2	0/1:34,33:31:67:0.493:2	0/1:0,59:32:59:1.00:2	0/1:0,52:32:52:1.00:2	0/1:29,21:31:50:0.420:2	0/1:1,49:32:50:0.980:2	0/1:0,60:33:60:1.00:2	./.	0/1:40,34:32:74:0.459:2
chr2	239140638	rs13419960	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,5:30:21:0.250:2	./.	0/1:41,32:27:73:0.438:2	./.	./.	./.	./.	./.	./.
chr2	239140682	rs13419980	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,4:32:16:0.250:2	./.	0/1:48,33:30:81:0.407:2	./.	./.	./.	./.	./.	./.
chr2	239140727	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:31:109:0.037:2	./.	./.	./.	./.	./.
chr2	239140728	rs11689033	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,23:32:72:0.319:2	0/1:25,20:32:45:0.444:2	./.	0/1:58,60:33:118:0.508:2	0/1:28,28:30:56:0.500:2	0/1:0,104:32:104:1.00:2	0/1:36,27:32:63:0.429:2	0/1:1,92:32:93:0.989:2	0/1:2,98:33:100:0.980:2	./.	0/1:48,55:33:103:0.534:2
chr2	239141152	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	239141157	rs115643647	G	T,A	.	PASS	AC=2,1;AF=0.222,0.111;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant11	GT:BQ:DP:FA:SS	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0/2:31:63:0.063:2	0/1:30:12:0.583:2	./.	0/1:32:63:0.397:2	./.	./.	./.	./.	./.	./.
chr2	239141174	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:31:66:0.061:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	239141221	rs11694487	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,42:30:102:0.412:2	0/1:40,22:31:62:0.355:2	0/1:7,5:32:12:0.417:2	0/1:61,43:30:104:0.413:2	0/1:2,65:29:67:0.970:2	0/1:2,100:29:102:0.980:2	0/1:38,24:29:62:0.387:2	0/1:5,90:29:95:0.947:2	0/1:1,117:31:119:0.992:2	./.	0/1:59,50:30:109:0.459:2
chr2	239155053	rs934945	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,28:31:82:0.341:2	0/1:38,16:30:54:0.296:2	0/1:53,28:31:81:0.346:2	./.	./.	0/1:1,82:31:83:0.988:2	./.	./.
chr2	239157721	rs35873326	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,21:31:42:0.500:2	./.	./.	./.	./.	./.	0/1:9,16:31:25:0.640:2
chr2	239162318	rs10195959	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,31:33:65:0.477:2
chr2	239165663	rs2304669	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,20:29:41:0.488:2	0/1:22,15:28:37:0.405:2	./.	./.	./.	0/1:27,39:29:66:0.591:2	0/1:44,29:28:73:0.397:2	0/1:0,60:29:60:1.00:2	./.	./.	0/1:24,20:27:44:0.455:2
chr2	239167209	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:128:0.031:2	./.
chr2	239170873	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:187,4:33:191:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr2	239181810	rs142139283	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,47:31:110:0.427:2	./.	./.	./.	./.
chr2	239229372	rs13398676	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,22:32:46:0.478:2	0/1:10,11:31:21:0.524:2	0/1:2,3:32:5:0.600:2	0/1:29,33:32:62:0.532:2	0/1:31,32:30:63:0.508:2	0/1:0,59:31:60:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,71:31:71:1.00:2	0/1:1,38:33:39:0.974:2	./.	0/1:12,18:31:30:0.600:2
chr2	239237388	rs61742338	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:7:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	239237751	rs3769110	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,20:32:49:0.408:2
chr2	239237953	rs12464423	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:25:4:0.750:2	./.	./.	0/1:1,48:30:49:0.980:2	0/1:21,16:29:37:0.432:2	./.	0/1:23,28:32:51:0.549:2	./.	./.
chr2	239237974	rs17854985	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,19:28:32:0.594:2
chr2	239253224	rs58277463	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,32:31:88:0.364:2
chr2	239261866	rs3213874	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:73,56:32:129:0.434:2	0/1:40,31:32:71:0.437:2	./.	0/1:85,93:32:178:0.522:2	0/1:104,89:31:193:0.461:2	./.	0/1:120,71:33:191:0.372:2	0/1:1,185:32:186:0.995:2	0/1:89,92:33:181:0.508:2	./.	./.
chr2	239344412	rs3191996	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:38,41:31:79:0.519:2	0/1:20,19:31:39:0.487:2	./.	0/1:41,38:31:80:0.481:2	./.	./.	./.	./.	./.	0/1:32,32:30:64:0.500:2	./.
chr2	240003813	rs61754649	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,49:31:103:0.476:2	./.	./.	./.	./.
chr2	240003870	rs1063639	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:54,83:30:137:0.606:2	0/1:25,39:31:64:0.609:2	0/1:17,14:29:31:0.452:2	./.	0/1:0,191:30:191:1.00:2	./.	./.	0/1:0,192:30:192:1.00:2	./.	0/1:0,159:30:159:1.00:2	0/1:1,145:30:146:0.993:2
chr2	240011717	rs61752234	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,64:30:151:0.424:2	./.	0/1:80,65:30:145:0.448:2	./.	./.	./.	./.	./.
chr2	240016771	rs2279273	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,28:32:52:0.538:2
chr2	240033247	rs146056747	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,55:29:113:0.487:2	./.	./.	./.
chr2	240033391	rs148813865	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,30:30:63:0.476:2	./.	./.	./.	./.	./.	./.
chr2	240036848	rs114495208	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,28:30:60:0.467:2	./.	./.	./.	./.	./.
chr2	240036959	rs79199572	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,14:31:34:0.412:2	0/1:10,5:32:15:0.333:2	./.	./.	./.	./.	./.	./.	0/1:20,19:33:39:0.487:2	./.	./.
chr2	240055966	rs35291459	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,10:29:20:0.500:2	./.	./.	./.	0/1:8,9:29:17:0.529:2	./.	0/1:6,5:32:11:0.455:2
chr2	240323661	rs1709851	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:21,13:31:34:0.382:2	0/1:8,12:32:20:0.600:2	0/1:0,3:22:3:1.00:2	./.	0/1:0,35:30:35:1.00:2	0/1:26,27:30:53:0.509:2	0/1:0,19:31:19:1.00:2	0/1:25,24:30:49:0.490:2	0/1:0,50:32:50:1.00:2	0/1:0,32:30:32:1.00:2	0/1:31,33:31:64:0.516:2
chr2	240500170	rs35846411	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,18:32:48:0.375:2	./.	0/1:14,27:31:41:0.659:2	./.	./.	./.	./.	./.
chr2	240500173	rs10187580	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,33:29:47:0.702:2	0/1:28,14:31:42:0.333:2	0/1:20,27:30:47:0.574:2	0/1:1,46:30:47:0.979:2	0/1:2,54:31:56:0.964:2	0/1:17,13:32:30:0.433:2	0/1:23,12:33:36:0.343:2
chr2	240500249	rs59626274	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,79:30:152:0.523:2	./.	./.	./.	0/1:0,117:31:117:1.00:2	./.	0/1:50,49:30:99:0.495:2
chr2	240500294	rs11683242	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,11:31:17:0.647:2	0/1:99,65:30:164:0.396:2	./.	0/1:76,82:29:158:0.519:2	./.	./.	./.	./.	./.
chr2	240500413	rs6543554	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,43:29:92:0.467:2	0/1:37,21:29:58:0.362:2	0/1:0,13:30:13:1.00:2	0/1:73,55:30:128:0.430:2	0/1:80,79:29:159:0.497:2	0/1:0,116:29:116:1.00:2	0/1:85,70:30:155:0.452:2	0/1:0,147:29:147:1.00:2	0/1:1,128:30:129:0.992:2	0/1:0,112:29:112:1.00:2	0/1:59,67:28:126:0.532:2
chr2	240500437	rs10180205	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,80:32:169:0.473:2	0/1:48,77:31:125:0.616:2	0/1:74,71:32:145:0.490:2	0/1:0,157:32:157:1.00:2	0/1:0,119:33:119:1.00:2	0/1:73,54:32:127:0.425:2	0/1:65,56:31:121:0.463:2
chr2	240684644	rs201083198	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,70:30:177:0.395:2	./.	./.	./.	./.	./.
chr2	240912983	rs73105362	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,96:30:188:0.511:2	0/1:39,45:31:84:0.536:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	240921615	rs55992217	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,32:32:53:0.604:2	0/1:32,17:31:49:0.347:2	./.
chr2	240923050	rs1530144	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,4:31:21:0.190:2	0/1:2,116:31:118:0.983:2	./.	0/1:53,52:31:105:0.495:2	./.	./.	0/1:55,68:32:123:0.553:2	./.	./.
chr2	240923124	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,4:31:118:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr2	240946766	rs13848	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:34:3:0.667:2	0/1:1,32:33:33:0.970:2	./.	0/1:13,11:30:24:0.458:2	./.	./.	0/1:17,24:34:41:0.585:2	./.	./.
chr2	240957243	rs6746937	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,64:31:120:0.533:2	./.	./.	0/1:85,78:31:163:0.479:2	./.	./.	0/1:1,141:31:142:0.993:2
chr2	240961722	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:35:143:0.028:2	./.
chr2	240961728	rs2083411	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,70:33:126:0.560:2	0/1:39,45:33:84:0.536:2	0/1:14,8:32:22:0.364:2	0/1:0,138:33:138:1.00:2	0/1:64,66:32:130:0.508:2	0/1:2,147:33:149:0.987:2	./.	0/1:100,87:33:187:0.465:2	0/1:95,94:34:189:0.497:2	./.	0/1:1,167:33:168:0.994:2
chr2	240969058	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:34:181:0.022:2
chr2	240969265	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,63:32:192:0.328:2	./.	./.	./.	./.	./.	./.
chr2	240969266	rs199979103	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:132,63:32:195:0.323:2	./.	./.	./.	./.	./.	./.
chr2	240969312	rs10187574	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,15:30:30:0.500:2	0/1:47,140:30:187:0.749:2	./.	0/1:112,77:30:189:0.407:2	./.	./.	0/1:122,66:31:188:0.351:2	./.	./.
chr2	240969456	rs201784423	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,8:31:20:0.400:2	0/1:99,79:31:178:0.444:2	0/1:143,55:31:198:0.278:2	./.	0/1:124,57:31:181:0.315:2	0/1:114,75:31:189:0.397:2	0/1:139,39:32:178:0.219:2	0/1:85,82:31:167:0.491:2	0/1:153,34:31:187:0.182:2
chr2	240969483	rs145620667	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,6:32:27:0.222:2	0/1:97,92:32:189:0.487:2	./.	0/1:141,47:31:188:0.250:2	./.	./.	0/1:150,33:33:185:0.180:2	./.	./.
chr2	240969640	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:44,5:31:49:0.102:2	0/1:166,21:31:187:0.112:2	0/1:173,17:31:191:0.089:2	./.	0/1:172,17:32:189:0.090:2	0/1:182,16:33:198:0.081:2	0/1:180,19:32:199:0.095:2	0/1:174,15:31:190:0.079:2	0/1:174,18:32:193:0.094:2
chr2	240969798	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:33:82:0.049:2	0/1:69,3:35:72:0.042:2	./.
chr2	240981262	rs6728493	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:31:7:0.429:2	0/1:24,17:32:41:0.415:2	./.	./.	0/1:34,27:33:61:0.443:2	./.	./.	0/1:20,20:33:40:0.500:2	./.
chr2	240981375	rs6732185	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,48:32:95:0.505:2	0/1:24,28:31:52:0.538:2	0/1:0,14:32:14:1.00:2	0/1:1,103:31:104:0.990:2	0/1:76,82:31:159:0.519:2	./.	0/1:103,71:32:174:0.408:2	0/1:0,165:31:165:1.00:2	0/1:58,44:31:103:0.431:2	0/1:1,66:31:67:0.985:2	0/1:53,54:32:107:0.505:2
chr2	240981464	rs113555849	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:40,4:28:44:0.091:2	0/1:29,6:26:36:0.171:2	./.	./.	0/1:63,4:27:67:0.060:2	./.	./.	./.	./.	./.	0/1:52,4:26:57:0.071:2
chr2	240981487	rs60617721	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,24:29:55:0.436:2	./.	./.	0/1:31,18:29:49:0.367:2	./.	./.	0/1:25,18:30:43:0.419:2	./.
chr2	240981492	rs141908616	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:34,5:32:40:0.128:2	./.	./.	./.	0/1:44,5:26:49:0.102:2	./.	./.	./.	0/1:39,4:27:43:0.093:2	./.	0/1:35,5:29:41:0.125:2
chr2	240981515	rs59139800	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,13:28:33:0.394:2	./.	./.	0/1:23,9:26:32:0.281:2	./.	./.	0/1:18,9:31:27:0.333:2	./.
chr2	240981520	rs28711942	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,6:27:37:0.162:2	0/1:13,6:22:19:0.316:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,3:32:34:0.091:2
chr2	240981528	.	C	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,4:28:34:0.118:2	0/1:32,3:32:36:0.086:2	./.	0/1:29,4:32:33:0.121:2
chr2	240981576	rs28681323	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,5:32:19:0.263:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	240981968	rs368876876	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,5:31:36:0.143:2	./.	./.	0/1:1,4:31:5:0.800:2	./.	0/1:0,2:33:2:1.00:2	./.
chr2	240982009	rs202192655	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,4:29:76:0.053:2	./.	./.	./.	./.	./.	./.
chr2	240982024	rs74213762	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,5:30:50:0.100:2	0/1:28,8:27:36:0.222:2	./.	./.	./.	0/1:59,6:27:67:0.092:2	0/1:37,5:31:42:0.119:2	./.	0/1:43,4:33:48:0.085:2	./.	0/1:23,6:28:29:0.207:2
chr2	240982047	rs148163158	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,9:25:52:0.173:2	./.	./.	./.	./.	./.	./.	./.
chr2	240982052	rs77588089	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:33,4:31:40:0.108:2	./.	0/1:39,13:31:52:0.250:2	0/1:112,16:29:128:0.125:2	0/1:83,8:29:93:0.088:2	0/1:59,4:34:63:0.063:2	0/1:53,28:32:81:0.346:2	0/1:53,12:33:66:0.185:2	0/1:27,7:32:34:0.206:2	0/1:36,10:30:46:0.217:2
chr2	240982060	rs201132375	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,4:30:60:0.067:2	0/1:130,13:26:143:0.091:2	./.	./.	0/1:88,12:25:100:0.120:2	./.	0/1:35,6:31:41:0.146:2	./.
chr2	240982075	rs139834525	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,9:23:66:0.136:2	./.	./.	./.	./.	./.	./.	./.
chr2	240982080	rs143810849	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,9:29:68:0.134:2	0/1:152,8:28:160:0.050:2	0/1:99,6:27:106:0.057:2	./.	0/1:113,9:30:123:0.074:2	0/1:74,11:29:86:0.129:2	0/1:39,4:28:46:0.093:2	0/1:50,6:27:57:0.107:2
chr2	240982103	rs74344384	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,7:25:77:0.091:2	./.	./.	./.	./.	./.	./.	./.
chr2	240982108	rs112152720	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,9:26:187:0.048:2	./.	./.	./.
chr2	240982116	rs72993513	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:31:5:1.00:2	0/1:14,64:31:78:0.821:2	0/1:109,62:31:171:0.363:2	./.	./.	0/1:24,160:31:185:0.870:2	0/1:64,39:32:103:0.379:2	0/1:12,58:31:70:0.829:2	0/1:55,30:31:85:0.353:2
chr2	240982131	rs79839275	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,60:29:124:0.484:2	./.	./.
chr2	240982228	rs10439373	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,51:31:115:0.459:2	0/1:34,39:30:73:0.534:2	0/1:0,6:31:6:1.00:2	0/1:6,96:31:103:0.941:2	0/1:89,86:30:177:0.491:2	./.	./.	0/1:4,174:31:180:0.978:2	0/1:91,63:32:154:0.409:2	0/1:3,92:31:95:0.968:2	0/1:63,61:31:126:0.492:2
chr2	240982247	rs75044548	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,12:28:108:0.111:2	./.	./.	./.	./.	./.	./.	./.
chr2	240982257	rs62184587	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:57,51:30:108:0.472:2	0/1:36,28:28:64:0.438:2	./.	0/1:87,17:29:104:0.163:2	./.	./.	0/1:113,10:26:123:0.081:2	./.	./.	0/1:89,9:30:99:0.092:2	./.
chr2	240982271	rs76841013	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,17:28:92:0.185:2	./.	./.	0/1:104,9:29:113:0.080:2	./.	./.	0/1:78,8:31:86:0.093:2	./.
chr2	240984789	rs12465491	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,6:29:20:0.300:2	0/1:99,92:30:191:0.482:2	./.	./.	0/1:85,103:30:188:0.548:2	./.	./.	0/1:82,71:30:153:0.464:2	./.
chr2	240984827	rs72993519	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,81:27:192:0.422:2	./.	./.	./.	./.	./.
chr2	240984833	rs13389099	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,15:32:28:0.556:2	0/1:91,96:32:187:0.513:2	0/1:90,102:31:192:0.531:2	./.	./.	0/1:7,176:31:183:0.962:2	0/1:101,84:32:185:0.454:2	0/1:92,99:32:191:0.518:2	0/1:87,78:32:165:0.473:2
chr2	240984955	rs201011599	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,34:29:178:0.191:2	./.	0/1:175,17:25:192:0.089:2	./.	./.	0/1:175,16:30:191:0.084:2	./.	./.
chr2	240985099	rs150098707	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,10:31:24:0.417:2	0/1:95,92:31:187:0.492:2	0/1:138,44:31:182:0.242:2	./.	0/1:123,69:31:192:0.359:2	0/1:85,96:30:182:0.530:2	0/1:124,54:32:178:0.303:2	0/1:66,88:31:154:0.571:2	0/1:116,57:31:173:0.329:2
chr2	240985126	rs199947939	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,3:30:19:0.158:2	0/1:106,80:32:186:0.430:2	./.	0/1:148,41:31:189:0.217:2	./.	./.	0/1:157,31:32:188:0.165:2	./.	./.
chr2	240985347	rs13030992	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,17:30:17:1.00:2	0/1:125,36:31:161:0.224:2	0/1:120,35:30:156:0.226:2	./.	0/1:135,45:30:180:0.250:2	0/1:112,37:31:149:0.248:2	0/1:135,40:31:175:0.229:2	0/1:100,36:31:136:0.265:2	0/1:112,32:30:144:0.222:2
chr2	241066201	rs74526284	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,61:32:158:0.386:2	./.	./.	./.	./.	./.
chr2	241066280	rs4292120	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,99:31:102:0.971:2	0/1:74,61:30:135:0.452:2	0/1:0,80:31:80:1.00:2	0/1:71,43:31:114:0.377:2	0/1:91,45:31:136:0.331:2	0/1:78,48:32:126:0.381:2	0/1:1,90:31:91:0.989:2	0/1:75,48:30:123:0.390:2
chr2	241066313	rs79464938	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,25:29:58:0.431:2	./.	./.	./.	./.	./.
chr2	241069348	rs115914450	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,103:31:182:0.566:2	./.	./.	./.	./.
chr2	241069410	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,12:32:132:0.091:2	./.	./.	./.
chr2	241070438	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:33:91:0.044:2
chr2	241392491	rs4268920	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	./.	./.
chr2	241395503	rs2292832	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,2:31:2:1.00:2	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,3:28:3:1.00:2	./.
chr2	241397487	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:32:164:0.024:2	./.	./.	./.	./.	./.
chr2	241401661	rs150046174	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,36:31:72:0.500:2	./.	./.	./.
chr2	241401741	rs1042829	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:36,41:31:77:0.532:2	0/1:12,18:31:30:0.600:2	./.	./.	0/1:43,54:30:97:0.557:2	./.	./.	0/1:0,111:31:111:1.00:2	./.	./.	./.
chr2	241404317	rs2229458	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:32:3:1.00:2	0/1:0,32:31:32:1.00:2	0/1:10,15:31:25:0.600:2	0/1:8,17:30:25:0.680:2	0/1:1,16:32:17:0.941:2	./.	0/1:0,26:32:26:1.00:2	0/1:0,21:31:21:1.00:2	0/1:1,16:30:17:0.941:2
chr2	241404499	rs2228327	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:30:6:1.00:2	0/1:0,70:31:70:1.00:2	0/1:30,34:31:64:0.531:2	0/1:34,28:30:62:0.452:2	0/1:2,62:31:64:0.969:2	./.	0/1:0,39:33:39:1.00:2	./.	0/1:19,12:31:31:0.387:2
chr2	241405479	rs1126920	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,29:31:73:0.397:2	./.	./.	0/1:47,45:31:92:0.489:2	./.	./.	./.
chr2	241405485	rs2228330	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,65:29:65:1.00:2	0/1:30,30:29:60:0.500:2
chr2	241405528	rs2228331	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,20:28:20:1.00:2	0/1:0,123:29:123:1.00:2	0/1:0,99:27:99:1.00:2	0/1:79,54:28:133:0.406:2	0/1:0,71:28:71:1.00:2	0/1:80,48:28:128:0.375:2	0/1:1,77:29:78:0.987:2	0/1:0,71:28:71:1.00:2	0/1:0,56:28:56:1.00:2
chr2	241405608	rs1042841	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,56:31:126:0.444:2	./.	./.	0/1:93,43:31:136:0.316:2	./.	./.	./.
chr2	241419090	rs73010211	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,9:30:22:0.409:2	./.	./.
chr2	241420373	rs147804085	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,27:32:56:0.482:2
chr2	241451350	rs10427348	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,12:33:23:0.522:2	0/1:13,6:29:19:0.316:2	0/1:0,3:33:3:1.00:2	0/1:29,11:32:40:0.275:2	0/1:30,25:32:55:0.455:2	./.	./.	0/1:21,15:33:36:0.417:2	0/1:16,10:34:26:0.385:2	./.	./.
chr2	241451351	rs35044862	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,14:33:27:0.519:2	./.	./.
chr2	241459497	rs68104327	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,53:32:114:0.465:2	0/1:40,36:32:76:0.474:2	./.	./.	./.	0/1:79,28:33:107:0.262:2	./.	./.
chr2	241463453	rs3821348	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:28:9:0.444:2	0/1:51,45:32:96:0.469:2	./.	0/1:50,44:31:94:0.468:2	0/1:61,37:31:98:0.378:2	./.	./.	./.	./.
chr2	241463595	rs35996697	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,25:32:53:0.472:2	0/1:40,23:30:63:0.365:2	./.	./.	./.	0/1:20,22:33:42:0.524:2	./.	./.
chr2	241465261	rs35186665	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,29:30:65:0.446:2	./.	./.	./.
chr2	241492395	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,2:35:6:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	241496770	rs62621191	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,26:30:57:0.456:2	0/1:31,40:31:71:0.563:2	./.	./.	./.	0/1:33,12:32:45:0.267:2	./.	./.
chr2	241531477	rs3792268	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:31:9:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	241531479	rs3792269	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,40:30:97:0.412:2	./.	./.	./.	./.	./.	./.	./.
chr2	241533345	rs13007017	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,84:30:155:0.542:2	./.	./.	./.
chr2	241535752	rs200003517	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,15:13:78:0.192:2	./.	./.	./.	./.	./.
chr2	241537421	rs3749166	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:32:65:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,14:32:14:1.00:2	0/1:34,49:31:83:0.590:2	0/1:0,93:32:94:1.00:2	0/1:30,41:31:71:0.577:2	0/1:33,45:31:78:0.577:2	0/1:0,72:32:72:1.00:2	0/1:31,46:33:77:0.597:2	./.	0/1:13,22:32:35:0.629:2
chr2	241538061	rs55878652	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,85:33:165:0.515:2	./.	./.	./.	./.	./.	./.	./.
chr2	241538074	rs2975766	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,93:29:93:1.00:2	0/1:0,84:29:84:1.00:2	0/1:0,17:29:17:1.00:2	0/1:0,180:29:180:1.00:2	0/1:0,138:29:138:1.00:2	0/1:87,81:29:168:0.482:2	0/1:0,151:30:151:1.00:2	0/1:0,185:29:185:1.00:2	0/1:0,122:30:122:1.00:2	./.	0/1:0,134:29:134:1.00:2
chr2	241556421	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,5:28:105:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	241556424	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:31:102:0.039:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	241569669	rs147336244	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,9:30:19:0.474:2	./.	./.	./.	./.
chr2	241569692	rs3749171	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:28:12:0.273:2	0/1:7,5:31:12:0.417:2	./.	./.	./.	./.	./.	./.
chr2	241569849	rs12468377	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,5:27:6:0.833:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	241570092	rs12468453	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:30:11:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	241570127	rs12468485	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,9:31:17:0.529:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	241570249	rs3749172	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,27:27:53:0.509:2	0/1:16,9:28:25:0.360:2	0/1:0,12:26:12:1.00:2	0/1:33,41:28:74:0.554:2	0/1:41,33:28:74:0.446:2	0/1:45,34:28:79:0.430:2	0/1:35,48:27:83:0.578:2	0/1:2,92:29:94:0.979:2	0/1:1,52:29:53:0.981:2	./.	0/1:24,25:27:49:0.510:2
chr2	241570391	rs2975786	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,4:33:21:0.190:2	0/1:8,4:30:12:0.333:2	0/1:0,10:30:10:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,20:31:20:1.00:2	0/1:23,12:33:35:0.343:2	./.	0/1:1,35:33:36:0.972:2	0/1:0,33:32:33:1.00:2	./.	0/1:20,13:29:33:0.394:2
chr2	241570446	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:30:52:0.077:2	./.	./.	./.	./.
chr2	241570639	rs116534085	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,32:32:56:0.571:2	./.	./.	./.	./.	./.	./.
chr2	241616119	rs200464367	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:146,26:30:173:0.151:2	0/1:142,39:28:182:0.215:2	0/1:29,29:30:59:0.500:2	0/1:149,40:29:189:0.212:2	0/1:147,38:31:188:0.205:2	0/1:147,37:30:185:0.201:2	0/1:88,97:31:185:0.524:2	0/1:164,30:30:194:0.155:2	./.	0/1:114,72:29:187:0.387:2	0/1:148,28:27:178:0.159:2
chr2	241621685	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,8:33:41:0.195:2	0/1:21,10:32:31:0.323:2	./.	./.	./.	0/1:57,18:32:75:0.240:2	0/1:38,20:31:58:0.345:2	./.	./.	0/1:16,22:33:38:0.579:2	0/1:14,10:31:25:0.417:2
chr2	241621700	.	G	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,10:28:44:0.227:2	0/1:21,10:29:31:0.323:2	./.	./.	./.	0/1:57,18:28:76:0.240:2	0/1:35,22:29:57:0.386:2	./.	./.	0/1:19,25:30:44:0.568:2	0/1:12,9:27:21:0.429:2
chr2	241621747	rs201329918	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,10:29:37:0.270:2	0/1:20,7:31:27:0.259:2	./.	./.	./.	0/1:33,15:30:49:0.313:2	0/1:19,15:30:34:0.441:2	./.	./.	0/1:12,25:29:38:0.676:2	0/1:13,9:31:22:0.409:2
chr2	241621788	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,10:31:28:0.357:2	./.	./.	./.	0/1:6,11:31:17:0.647:2	./.
chr2	241621866	rs62187796	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,9:28:11:0.818:2	0/1:2,5:30:7:0.714:2	0/1:3,12:31:15:0.800:2	./.	0/1:2,7:31:9:0.778:2	0/1:4,7:31:11:0.636:2	./.	0/1:2,5:30:7:0.714:2
chr2	241621869	rs74882485	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,14:32:14:1.00:2	0/1:0,4:32:4:1.00:2	./.	./.	./.	0/1:13,3:29:16:0.188:2	./.	./.	0/1:8,4:33:12:0.333:2	0/1:0,2:31:2:1.00:2	./.
chr2	241622187	rs4081909	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,14:31:20:0.700:2	./.	0/1:37,3:32:40:0.075:2	./.	./.	./.	./.	./.	./.
chr2	241622209	rs4081908	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,19:29:83:0.235:2	0/1:13,17:30:31:0.567:2	0/1:10,19:30:29:0.655:2	0/1:0,85:30:85:1.00:2	0/1:0,60:31:61:1.00:2	0/1:1,114:29:115:0.991:2	0/1:1,152:30:153:0.993:2	0/1:104,44:30:149:0.297:2	0/1:63,62:30:126:0.496:2	0/1:0,114:30:114:1.00:2	0/1:0,92:29:92:1.00:2
chr2	241627836	rs1003972	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:34:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	241627928	rs1560619	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,14:31:40:0.350:2	0/1:19,7:31:26:0.269:2	./.	0/1:37,33:30:70:0.471:2	0/1:29,32:31:61:0.525:2	0/1:25,23:30:48:0.479:2	0/1:45,33:30:78:0.423:2	./.	./.	0/1:0,37:30:37:1.00:2	0/1:21,23:30:44:0.523:2
chr2	241631390	rs146209567	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:70,4:29:74:0.054:2	./.	./.	0/1:127,8:32:135:0.059:2	./.	0/1:73,12:31:85:0.141:2	0/1:67,8:32:75:0.107:2	0/1:95,8:32:103:0.078:2	0/1:88,7:33:95:0.074:2	0/1:43,3:32:46:0.065:2	0/1:54,10:32:64:0.156:2
chr2	241631413	rs71428454	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,14:31:50:0.280:2	0/1:23,5:28:28:0.179:2	./.	./.	./.	0/1:34,11:30:45:0.244:2	0/1:18,8:31:26:0.308:2	./.	./.	0/1:3,18:30:21:0.857:2	0/1:39,4:30:43:0.093:2
chr2	241631476	rs4328629	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,6:32:13:0.462:2	./.	./.	0/1:11,8:29:19:0.421:2	0/1:6,11:31:17:0.647:2	0/1:16,10:28:27:0.385:2	0/1:2,3:29:5:0.600:2	./.	./.	0/1:0,14:32:14:1.00:2	0/1:6,3:33:9:0.333:2
chr2	241631665	rs76463197	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,21:31:43:0.488:2	0/1:26,20:30:46:0.435:2	0/1:20,29:30:49:0.592:2	0/1:7,8:31:15:0.533:2	0/1:17,21:30:38:0.553:2	0/1:13,16:31:29:0.552:2	./.	0/1:3,10:29:13:0.769:2
chr2	241631798	rs142225246	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,8:31:19:0.421:2	./.	./.	./.	0/1:8,9:31:18:0.529:2	./.
chr2	241631839	rs202017172	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,10:31:25:0.400:2	0/1:14,11:32:25:0.440:2	./.	./.	./.	0/1:21,10:29:31:0.323:2	0/1:16,9:28:25:0.360:2	./.	./.	0/1:6,14:28:21:0.700:2	0/1:10,5:31:15:0.333:2
chr2	241631886	rs375751722	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,14:29:33:0.424:2	0/1:20,10:27:30:0.333:2	./.	./.	./.	0/1:31,10:27:41:0.244:2	0/1:30,12:28:42:0.286:2	./.	./.	0/1:14,14:28:28:0.500:2	0/1:17,6:30:23:0.261:2
chr2	241631901	rs372417168	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,12:32:30:0.400:2	0/1:18,9:32:27:0.333:2	./.	./.	./.	0/1:33,11:32:44:0.250:2	0/1:32,13:31:45:0.289:2	./.	./.	0/1:13,14:33:27:0.519:2	0/1:18,5:32:23:0.217:2
chr2	241637616	rs201744512	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:140,43:29:186:0.235:2	0/1:143,34:30:178:0.192:2	0/1:25,29:30:54:0.537:2	0/1:157,29:29:186:0.156:2	0/1:150,37:29:189:0.198:2	0/1:155,27:30:183:0.148:2	0/1:140,51:30:191:0.267:2	0/1:156,33:29:189:0.175:2	./.	0/1:118,64:29:182:0.352:2	0/1:153,28:28:182:0.155:2
chr2	241660387	rs76974316	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,79:29:156:0.506:2	./.	./.
chr2	241674165	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:33:172:0.023:2	./.	./.
chr2	241685270	rs143037290	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,12:29:25:0.480:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	241685586	rs73102625	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,29:32:70:0.414:2	./.	./.	./.
chr2	241688137	rs115056533	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,34:32:70:0.486:2	./.	./.	./.	0/1:47,18:33:65:0.277:2	./.	./.
chr2	241696840	rs10594016	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,7:22:67:0.104:2	./.	./.	./.	./.	./.	./.	./.
chr2	241696941	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,15:11:115:0.130:2	./.
chr2	241700676	rs35945835	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,30:31:83:0.361:2	./.	./.	./.	./.	./.
chr2	241713646	rs1063353	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,21:32:21:1.00:2	./.	./.	0/1:92,88:32:180:0.489:2	0/1:116,74:33:190:0.389:2	0/1:87,107:33:194:0.552:2	0/1:92,74:33:166:0.446:2	./.	0/1:82,67:32:149:0.450:2
chr2	241722445	rs2288750	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:31:11:1.00:2	./.	./.	0/1:34,44:31:78:0.564:2	./.	./.	0/1:48,43:32:91:0.473:2	./.	./.
chr2	241808314	rs34116584	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,47:29:87:0.540:2	./.	./.	0/1:53,71:29:124:0.573:2	0/1:3,90:30:93:0.968:2	./.	./.
chr2	241808685	rs35698882	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,55:32:135:0.407:2	./.	./.	0/1:100,58:32:158:0.367:2	0/1:1,101:33:102:0.990:2	./.	./.
chr2	241813453	rs33958047	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,17:31:38:0.447:2	0/1:31,12:30:43:0.279:2	./.	./.	./.	./.
chr2	241817516	rs4426527	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,39:32:75:0.520:2	./.	./.	0/1:33,49:32:82:0.598:2	0/1:0,66:33:66:1.00:2	./.	./.
chr2	241828012	rs6708304	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:34:5:0.600:2	./.	./.	0/1:0,13:32:13:1.00:2	0/1:0,5:32:5:1.00:2	0/1:9,4:33:13:0.308:2	./.	./.	./.
chr2	241828034	rs6707568	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,13:30:13:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,9:28:9:1.00:2	0/1:2,16:31:18:0.889:2	0/1:1,18:30:19:0.947:2	0/1:0,7:32:7:1.00:2
chr2	241830969	rs10171067	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	0/1:0,39:30:39:1.00:2	0/1:2,43:31:45:0.956:2	0/1:51,36:30:87:0.414:2	./.	./.	0/1:13,18:32:31:0.581:2
chr2	241831005	rs10195453	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,33:30:33:1.00:2	0/1:0,42:31:42:1.00:2	0/1:42,22:31:64:0.344:2	./.	./.	0/1:8,19:31:27:0.704:2
chr2	241831296	rs6709469	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:61,3:34:64:0.047:2	./.	0/1:7,11:32:18:0.611:2	./.	./.	0/1:0,83:31:84:1.00:2	0/1:0,94:32:94:1.00:2	0/1:67,36:31:103:0.350:2	./.	./.	0/1:41,39:32:80:0.488:2
chr2	241834907	rs4359646	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,83:30:198:0.419:2	0/1:113,83:31:196:0.423:2	./.	./.	./.	./.
chr2	241834944	rs4468809	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,7:32:17:0.412:2	./.	0/1:167,5:33:172:0.029:2	0/1:3,168:32:171:0.982:2	0/1:3,162:33:165:0.982:2	0/1:106,83:33:189:0.439:2	./.	./.	0/1:69,60:32:129:0.465:2
chr2	241835379	rs12105122	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,6:30:6:1.00:2	0/1:0,4:33:4:1.00:2	./.	./.	./.	./.
chr2	241865156	rs4675847	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:32:10:1.00:2	./.	0/1:0,129:32:129:1.00:2	./.	0/1:113,59:33:172:0.343:2	0/1:0,152:32:152:1.00:2	0/1:106,66:33:172:0.384:2	0/1:0,136:32:136:1.00:2	0/1:96,83:32:179:0.464:2
chr2	241872597	rs4441463	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,14:29:15:0.933:2	./.	0/1:0,87:30:87:1.00:2	./.	0/1:54,33:30:87:0.379:2	0/1:1,76:30:77:0.987:2	0/1:67,45:30:112:0.402:2	0/1:38,25:30:63:0.397:2	0/1:34,30:28:64:0.469:2
chr2	241898824	rs10169006	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:29:10:1.00:2	./.	0/1:2,90:29:92:0.978:2	./.	0/1:103,53:29:156:0.340:2	0/1:0,134:30:134:1.00:2	0/1:41,48:32:89:0.539:2	0/1:50,40:30:90:0.444:2	0/1:58,35:30:93:0.376:2
chr2	241903943	rs77569264	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,10:32:20:0.500:2	./.	0/1:59,47:32:106:0.443:2	./.	./.	./.	./.	./.	0/1:22,29:32:51:0.569:2
chr2	241904001	rs11688859	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:28:11:1.00:2	./.	0/1:0,24:28:24:1.00:2	./.	0/1:9,12:30:21:0.571:2	0/1:0,33:28:33:1.00:2	0/1:17,20:29:37:0.541:2	0/1:17,9:29:26:0.346:2	0/1:5,7:28:12:0.583:2
chr2	241922430	rs4577273	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,41:28:104:0.394:2	./.	./.	0/1:80,74:29:154:0.481:2	./.	./.	./.	./.
chr2	241929228	rs10200024	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:29:39:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,17:30:17:1.00:2	0/1:3,74:29:77:0.961:2	0/1:42,36:29:78:0.462:2	0/1:0,76:29:76:1.00:2	0/1:45,29:30:74:0.392:2	./.	0/1:45,44:31:89:0.494:2	0/1:33,24:30:57:0.421:2	0/1:40,25:29:66:0.385:2
chr2	241979550	rs7571117	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,26:28:55:0.473:2	0/1:22,20:28:42:0.476:2	0/1:4,10:28:14:0.714:2	0/1:29,35:27:64:0.547:2	0/1:65,44:29:109:0.404:2	0/1:57,23:29:80:0.288:2	0/1:2,81:28:83:0.976:2	0/1:0,95:28:95:1.00:2	./.	0/1:34,30:29:64:0.469:2	0/1:0,48:27:48:1.00:2
chr2	241991797	rs373069031	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,29:30:42:0.690:2
chr2	241991875	rs57214830	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:21,28:32:49:0.571:2	0/1:15,18:30:33:0.545:2	./.	0/1:17,45:31:62:0.726:2	./.	0/1:55,40:30:95:0.421:2	0/1:32,43:30:75:0.573:2	./.	./.	./.	./.
chr2	242002263	rs3732228	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,26:30:71:0.366:2	./.	./.	./.	./.	./.	./.	./.
chr2	242003487	rs17852471	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:43,41:29:85:0.488:2	0/1:32,13:30:45:0.289:2	./.	0/1:44,46:29:90:0.511:2	./.	0/1:57,39:29:96:0.406:2	0/1:15,25:29:40:0.625:2	./.	./.	./.	./.
chr2	242004296	rs150081750	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,53:30:102:0.525:2	./.	./.	./.	./.	./.
chr2	242004866	rs2286321	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:36,23:29:59:0.390:2	0/1:14,8:29:22:0.364:2	./.	0/1:31,34:28:65:0.523:2	./.	0/1:29,29:28:58:0.500:2	0/1:30,10:27:40:0.250:2	./.	./.	./.	./.
chr2	242021126	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:121,4:31:125:0.032:2	./.	./.	./.	./.	./.	./.
chr2	242021742	rs2108485	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,35:29:91:0.385:2	0/1:28,19:30:47:0.404:2	./.	./.	./.	0/1:50,60:30:110:0.545:2	0/1:151,5:33:156:0.032:2	0/1:84,65:30:149:0.436:2	./.	./.	0/1:38,55:30:93:0.591:2
chr2	242028741	rs1062748	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,8:30:18:0.444:2	./.	0/1:60,50:27:110:0.455:2	./.	./.	0/1:78,58:28:136:0.426:2	0/1:47,59:31:106:0.557:2	0/1:40,37:27:77:0.481:2	0/1:66,36:29:103:0.353:2
chr2	242029426	rs62187374	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,40:31:74:0.541:2	0/1:30,22:31:52:0.423:2	./.	./.	./.	0/1:42,35:31:77:0.455:2	./.	./.	./.	./.	./.
chr2	242029737	rs61234509	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,6:31:19:0.316:2	./.	0/1:115,78:32:193:0.404:2	./.	./.	0/1:102,91:32:193:0.472:2	0/1:95,97:33:192:0.505:2	0/1:87,77:32:164:0.470:2	0/1:70,64:32:134:0.478:2
chr2	242033696	rs57117519	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,31:30:72:0.431:2	./.	./.	0/1:36,28:31:65:0.438:2
chr2	242033770	rs2302047	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:33:12:0.500:2	./.	0/1:50,33:31:83:0.398:2	./.	./.	0/1:55,60:32:115:0.522:2	0/1:55,51:34:106:0.481:2	0/1:23,42:32:65:0.646:2	0/1:50,49:32:99:0.495:2
chr2	242035544	rs2240539	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,113:31:198:0.571:2	./.	./.	0/1:60,68:31:128:0.531:2
chr2	242036797	rs2286323	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,36:30:74:0.486:2	0/1:29,27:30:56:0.482:2	./.	./.	./.	0/1:38,39:30:77:0.506:2	./.	./.	./.	./.	./.
chr2	242039198	rs3796093	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,36:33:77:0.468:2	./.	./.	0/1:38,32:32:70:0.457:2
chr2	242040636	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,65:31:124:0.524:2	./.	./.	./.	./.	./.	./.
chr2	242041728	rs2286324	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,23:31:64:0.359:2	0/1:15,14:31:29:0.483:2	./.	./.	./.	0/1:54,63:30:117:0.538:2	./.	./.	./.	./.	./.
chr2	242046785	rs1131293	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,50:31:93:0.538:2	0/1:26,15:32:41:0.366:2	./.	./.	./.	0/1:74,79:32:153:0.516:2	./.	./.	./.	./.	./.
chr2	242047605	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,5:26:40:0.125:2	./.	./.	./.	0/1:29,3:30:32:0.094:2
chr2	242051777	rs2074824	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,38:33:68:0.559:2	0/1:32,22:33:54:0.407:2	./.	./.	./.	0/1:53,62:32:115:0.539:2	./.	./.	./.	./.	./.
chr2	242054403	rs3815305	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,12:32:31:0.387:2	0/1:14,10:32:24:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	242054718	rs61748659	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:32:9:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	242062162	rs2302050	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,18:32:48:0.375:2	0/1:14,12:30:26:0.462:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	242063448	rs2302052	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,28:27:56:0.500:2	./.	./.	0/1:19,17:30:36:0.472:2
chr2	242065624	rs2240541	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,17:29:41:0.415:2	./.	./.	0/1:14,9:27:23:0.391:2
chr2	242066314	rs2240542	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,56:31:107:0.523:2	0/1:63,49:31:112:0.438:2	./.	0/1:3,85:31:88:0.966:2	0/1:38,39:32:77:0.506:2	0/1:38,36:31:74:0.486:2	0/1:0,64:31:64:1.00:2
chr2	242066443	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:31:92:0.043:2	./.
chr2	242066830	rs2240544	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,21:32:57:0.368:2	./.	./.	0/1:22,16:33:38:0.421:2
chr2	242072357	rs34401965	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,40:32:89:0.449:2	./.	./.	./.	./.	0/1:41,47:33:89:0.534:2	./.	./.
chr2	242076549	rs141291099	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,15:32:29:0.517:2	./.	./.	./.	./.
chr2	242077496	rs1470414	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,16:32:33:0.485:2	0/1:7,14:32:21:0.667:2	./.	0/1:33,25:32:58:0.431:2	0/1:35,42:31:77:0.545:2	0/1:31,34:31:65:0.523:2	0/1:22,24:31:46:0.522:2	0/1:41,29:31:70:0.414:2	./.	0/1:0,38:32:38:1.00:2	0/1:18,23:31:41:0.561:2
chr2	242079007	rs2074828	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,37:30:66:0.561:2	0/1:27,20:30:47:0.426:2	0/1:5,9:29:14:0.643:2	0/1:58,51:30:109:0.468:2	0/1:55,44:29:99:0.444:2	0/1:59,56:29:115:0.487:2	0/1:51,41:29:92:0.446:2	0/1:67,65:29:132:0.492:2	./.	0/1:0,75:30:75:1.00:2	0/1:56,42:29:100:0.429:2
chr2	242082262	rs6709462	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,22:31:42:0.524:2	0/1:18,6:31:24:0.250:2	0/1:8,4:31:12:0.333:2	0/1:27,23:31:50:0.460:2	0/1:30,35:30:65:0.538:2	0/1:43,29:31:72:0.403:2	0/1:45,35:31:80:0.438:2	0/1:31,34:30:65:0.523:2	0/1:44,23:32:67:0.343:2	0/1:0,37:30:37:1.00:2	0/1:21,24:31:45:0.533:2
chr2	242128115	rs150946357	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,53:31:122:0.434:2	./.	./.	./.	./.	./.
chr2	242129487	rs11695874	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,64:31:115:0.557:2	./.	0/1:59,65:31:124:0.524:2	0/1:57,53:30:110:0.482:2	./.	./.
chr2	242139546	rs146489756	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:31:62:0.065:2	./.	./.	./.
chr2	242140785	rs78154103	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,15:30:28:0.536:2	0/1:17,20:30:37:0.541:2	0/1:25,11:31:36:0.306:2	0/1:9,17:29:26:0.654:2	./.	./.
chr2	242141719	rs2074840	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,4:33:18:0.222:2	0/1:4,3:32:7:0.429:2	0/1:0,2:32:2:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,16:31:16:1.00:2	0/1:11,11:30:22:0.500:2	0/1:0,31:32:31:1.00:2	0/1:15,14:32:29:0.483:2	0/1:0,21:33:21:1.00:2	0/1:12,17:32:29:0.586:2
chr2	242149010	rs57677160	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,87:30:178:0.489:2	0/1:66,74:30:140:0.529:2	0/1:79,114:30:193:0.591:2	0/1:65,75:31:140:0.536:2	./.	./.
chr2	242151585	rs7593101	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:31:11:0.455:2	./.	./.	./.	0/1:101,61:31:162:0.377:2	0/1:7,141:31:148:0.953:2	./.	0/1:39,37:31:77:0.487:2	./.
chr2	242157087	rs111770284	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:30:11:1.00:2	./.	0/1:1,24:29:25:0.960:2	0/1:3,4:31:7:0.571:2	./.	0/1:7,11:30:18:0.611:2	./.	0/1:1,3:30:4:0.750:2
chr2	242157089	rs151090828	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:33:7:0.571:2	./.	0/1:9,10:27:19:0.526:2	./.	./.
chr2	242157228	rs78605785	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:32:9:0.556:2	./.	./.	./.	0/1:17,7:31:24:0.292:2	0/1:2,23:32:25:0.920:2	./.	0/1:11,13:32:24:0.542:2	./.
chr2	242157241	rs76832527	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,50:30:51:0.980:2	./.	0/1:1,47:30:48:0.979:2	0/1:6,14:31:20:0.700:2	./.	0/1:12,13:32:25:0.520:2	./.	0/1:6,8:26:14:0.571:2
chr2	242163359	rs7590653	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,23:30:53:0.434:2	0/1:0,39:31:39:1.00:2	./.	0/1:26,22:31:48:0.458:2	./.
chr2	242169646	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:32:112:0.036:2	./.	./.	./.	./.	./.
chr2	242174609	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:33:91:0.044:2	./.	./.	./.
chr2	242179129	rs200802562	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:24,7:24:31:0.226:2	./.	0/1:52,21:14:73:0.288:2	0/1:67,13:12:80:0.163:2	0/1:63,15:14:78:0.192:2	./.	./.	0/1:54,10:13:64:0.156:2	0/1:44,8:15:52:0.154:2	./.
chr2	242179134	rs10153800	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,90:30:91:0.989:2	0/1:3,103:30:108:0.972:2	0/1:41,29:31:70:0.414:2	0/1:31,28:29:59:0.475:2	./.
chr2	242192848	rs7578199	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,135:32:137:0.985:2	0/1:4,142:32:146:0.973:2	0/1:74,66:34:140:0.471:2	0/1:57,43:32:100:0.430:2	./.
chr2	242202149	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,70:30:135:0.519:2
chr2	242203916	rs11891776	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:31:64:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,99:31:99:1.00:2	./.	0/1:0,88:30:88:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,94:31:94:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,123:31:124:1.00:2
chr2	242275509	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:30:72:0.056:2	./.	./.	./.	./.
chr2	242312572	rs61739702	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,35:32:106:0.330:2	./.	0/1:42,49:32:92:0.538:2	./.
chr2	242350466	rs2240479	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,35:33:71:0.493:2	0/1:25,13:33:38:0.342:2	./.	0/1:50,33:33:83:0.398:2	0/1:26,36:33:62:0.581:2	./.	./.	./.	./.	./.	./.
chr2	242371101	rs757978	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,43:32:90:0.478:2	./.	./.
chr2	242373686	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:30:13:0.308:2	./.	./.	./.	./.	./.	./.	./.	./.
chr2	242407588	rs41342147	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,38:32:94:0.404:2	./.	./.	./.	0/1:53,59:32:112:0.527:2	./.	./.
chr2	242407746	rs10933559	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,40:31:72:0.556:2	./.	0/1:1,42:31:43:0.977:2	0/1:51,34:31:85:0.400:2	./.	./.	./.
chr2	242422890	rs144542827	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:34:66:0.061:2	./.
chr2	242433489	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:149,12:15:161:0.075:2	./.	./.	./.	./.	./.	./.
chr2	242438515	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:32:74:0.054:2	./.	./.	./.	./.	./.
chr2	242440221	rs13013693	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,12:29:22:0.545:2	./.	0/1:76,103:31:179:0.575:2	./.	0/1:5,172:32:177:0.972:2	0/1:108,77:32:186:0.416:2	./.	./.	./.
chr2	242440268	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:33:109:0.037:2	./.
chr2	242447423	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:32:76:0.053:2	./.
chr2	242501828	rs145137590	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,41:32:77:0.532:2	./.
chr2	242572846	rs3208142	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,33:32:34:0.971:2	0/1:0,40:33:40:1.00:2	./.	0/1:33,26:31:59:0.441:2	./.	0/1:25,23:33:48:0.479:2	./.
chr2	242573211	rs7424328	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:24,17:30:41:0.415:2	0/1:12,15:30:27:0.556:2	0/1:0,5:30:5:1.00:2	./.	0/1:31,28:30:59:0.475:2	0/1:2,45:30:47:0.957:2	./.	0/1:36,35:30:71:0.493:2	./.	0/1:21,25:30:46:0.543:2	0/1:23,22:31:45:0.489:2
chr2	242598758	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,18:32:35:0.514:2	./.	./.
chr2	242606036	rs6709768	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,5:34:78:0.064:2	./.	0/1:9,7:33:16:0.438:2	0/1:73,55:33:128:0.430:2	0/1:86,69:33:155:0.445:2	0/1:49,53:32:102:0.520:2	./.	0/1:76,67:32:143:0.469:2	./.	0/1:48,37:33:85:0.435:2	0/1:52,36:33:88:0.409:2
chr2	242606080	rs35613684	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,38:31:85:0.447:2	./.
chr2	242610738	rs11538896	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,97:30:98:0.990:2	0/1:0,60:29:60:1.00:2	./.	0/1:74,73:31:148:0.497:2	./.	./.	0/1:2,194:31:196:0.990:2	./.	./.	./.	0/1:57,38:31:95:0.400:2
chr2	242610773	rs7601000	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,93:31:94:0.989:2	0/1:0,54:32:54:1.00:2	0/1:12,7:29:19:0.368:2	0/1:0,165:32:165:1.00:2	0/1:1,172:32:173:0.994:2	0/1:0,189:32:189:1.00:2	0/1:0,178:32:178:1.00:2	0/1:89,97:32:186:0.522:2	./.	0/1:0,110:32:110:1.00:2	0/1:0,104:31:105:1.00:2
chr2	242618050	rs1131195	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:33:2:1.00:2	0/1:25,26:33:51:0.510:2	0/1:17,11:32:28:0.393:2	0/1:26,18:32:44:0.409:2	./.	0/1:26,26:33:52:0.500:2	./.	0/1:23,23:32:46:0.500:2	0/1:47,23:32:70:0.329:2
chr2	242674803	rs77940364	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,10:32:16:0.625:2	0/1:0,4:32:4:1.00:2	./.
chr2	242680430	rs4073889	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:15,14:32:29:0.483:2	0/1:20,15:30:35:0.429:2	./.	./.	0/1:0,50:31:50:1.00:2	./.	./.	0/1:0,49:32:49:1.00:2	0/1:0,43:32:43:1.00:2	0/1:18,23:32:41:0.561:2	0/1:19,11:30:30:0.367:2
chr2	242688292	rs34767042	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:42,36:31:78:0.462:2	0/1:32,25:28:57:0.439:2	0/1:6,5:31:11:0.455:2	./.	0/1:0,115:29:115:1.00:2	./.	./.	0/1:0,116:30:116:1.00:2	0/1:1,117:31:118:0.992:2	0/1:32,46:31:78:0.590:2	0/1:27,36:32:63:0.571:2
chr2	242690675	rs1106639	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,83:31:193:0.430:2	./.	0/1:117,72:32:189:0.381:2	./.	0/1:66,75:32:141:0.532:2
chr2	242690745	rs1105273	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:34,35:31:69:0.507:2	0/1:22,27:31:49:0.551:2	0/1:6,7:31:13:0.538:2	./.	0/1:75,38:31:113:0.336:2	./.	./.	0/1:61,59:32:120:0.492:2	0/1:51,83:33:134:0.619:2	./.	./.
chr2	242690770	rs141343442	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,38:28:104:0.365:2	./.	./.
chr2	242694669	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,5:27:21:0.238:2	./.	./.	./.	./.	./.
chr2	242694999	rs145205270	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,37:32:71:0.521:2	./.	./.	./.	./.	./.
chr2	242716380	rs12469459	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,46:31:98:0.469:2	0/1:39,32:32:71:0.451:2	./.	0/1:1,77:32:78:0.987:2	./.	0/1:37,36:32:73:0.493:2	./.	0/1:36,28:32:64:0.438:2
chr2	242742875	rs62620233	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,33:29:75:0.440:2	./.	./.	0/1:34,26:29:60:0.433:2	./.	0/1:33,28:29:61:0.459:2	./.
chr2	242743357	rs78253117	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,4:30:7:0.571:2	./.	./.	./.	./.	./.	./.
chr2	242756247	rs146496787	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,6:33:18:0.333:2	./.	./.
chr2	242757411	rs36111671	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,15:28:32:0.469:2	./.	./.	./.	./.	./.	./.
chr2	242757820	rs11545301	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,20:32:32:0.625:2	0/1:0,17:32:17:1.00:2	./.	0/1:10,10:33:20:0.500:2	0/1:11,6:31:17:0.353:2	./.
chr2	242758179	rs2293764	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,11:32:36:0.306:2	0/1:5,9:32:14:0.643:2	./.	./.	./.	./.	./.	0/1:32,10:31:42:0.238:2
chr2	242758203	rs2293763	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,22:32:69:0.319:2	0/1:0,23:32:23:1.00:2	./.	./.	./.	./.	./.	0/1:50,17:31:67:0.254:2
chr2	242758301	rs147362605	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,31:27:74:0.419:2	./.	./.	./.
chr2	242758326	rs2293761	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,18:28:47:0.383:2	0/1:0,21:25:21:1.00:2	./.	./.	./.	./.	./.	0/1:18,19:26:37:0.514:2
chr2	242793273	rs2227981	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,16:28:48:0.333:2	0/1:9,10:29:19:0.526:2	./.	0/1:34,21:31:55:0.382:2	0/1:0,22:30:22:1.00:2	0/1:0,57:29:57:1.00:2	0/1:20,12:29:32:0.375:2	./.	0/1:25,10:31:35:0.286:2	0/1:26,22:30:48:0.458:2	./.
chr2	242813124	rs13016102	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,58:33:58:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,57:32:57:1.00:2
chr2	242814009	rs7420371	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:32:9:0.333:2	0/1:0,5:31:5:1.00:2	0/1:0,10:31:10:1.00:2	./.	./.	./.	./.	./.
chr2	242814027	rs76439282	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:33:6:0.500:2	./.	./.	./.	./.	./.	./.	0/1:3,4:31:7:0.571:2
chr2	242814268	rs114620732	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,37:31:69:0.536:2	./.	./.	./.	./.	./.	./.	./.
chr2	242814283	rs28499542	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,39:30:77:0.506:2	./.	./.	./.	./.	./.	./.	0/1:27,20:32:47:0.426:2
chr2	242814360	rs28378061	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,19:31:50:0.380:2	./.	./.	./.	./.	./.	./.	0/1:26,9:34:35:0.257:2
chr2	242814463	rs28523279	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,26:32:58:0.448:2	./.	./.	./.	./.	./.	./.	0/1:12,18:32:30:0.600:2
chr2	242814588	rs371087280	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,10:26:21:0.476:2	0/1:3,5:29:8:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr2	242839363	rs4973668	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,3:32:12:0.250:2	0/1:57,45:32:102:0.441:2	0/1:1,85:32:86:0.988:2	0/1:0,99:32:99:1.00:2	./.	./.	./.	./.	0/1:39,38:33:77:0.494:2
chr2	242839372	rs78233573	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,46:32:114:0.404:2	./.
chr3	361508	rs2272522	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:8,8:33:16:0.500:2	0/1:5,4:32:9:0.444:2	./.	./.	./.	./.	./.	0/1:17,9:31:26:0.346:2	0/1:12,14:33:26:0.538:2	./.	./.
chr3	391100	rs13060847	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:33:38:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,26:33:26:1.00:2	0/1:2,33:33:35:0.943:2	0/1:0,54:34:54:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,64:33:64:1.00:2
chr3	396416	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:32:107:0.037:2	./.	./.	./.
chr3	403425	rs148288092	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,95:33:186:0.511:2	0/1:55,45:32:100:0.450:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	407739	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,4:30:44:0.091:2	./.	./.	./.	./.	./.	./.
chr3	430968	rs115357599	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,51:32:116:0.440:2
chr3	439963	rs6442827	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:33:62:1.00:2	0/1:0,58:33:58:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,70:33:70:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,64:32:64:1.00:2	0/1:1,50:33:51:0.980:2	0/1:0,53:33:53:1.00:2	0/1:0,85:34:85:1.00:2	0/1:0,70:33:70:1.00:2	0/1:0,80:33:80:1.00:2
chr3	440028	rs6771714	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:29:72:1.00:2	0/1:0,55:28:55:1.00:2	0/1:0,8:27:8:1.00:2	0/1:0,74:29:74:1.00:2	0/1:0,52:29:52:1.00:2	0/1:0,101:29:101:1.00:2	0/1:2,69:29:71:0.972:2	0/1:0,66:29:66:1.00:2	0/1:0,109:30:109:1.00:2	0/1:1,70:30:71:0.986:2	0/1:0,80:29:81:1.00:2
chr3	1262474	rs2013828	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,6:29:17:0.353:2	0/1:3,142:30:145:0.979:2	./.	0/1:70,88:29:158:0.557:2	0/1:2,94:29:96:0.979:2	./.	0/1:87,71:29:158:0.449:2	./.	0/1:87,76:29:163:0.466:2
chr3	1269607	rs61739199	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,36:29:85:0.424:2	./.	./.	./.	./.	./.	./.	./.
chr3	1363384	rs185281214	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,51:32:124:0.411:2	./.	./.	./.
chr3	1418753	rs17038365	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,21:31:49:0.429:2	./.	./.	./.	./.	0/1:36,28:32:64:0.438:2	./.
chr3	1424718	rs2291101	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:70,62:29:132:0.470:2	0/1:41,33:30:74:0.446:2	./.	0/1:85,69:29:154:0.448:2	0/1:94,40:28:134:0.299:2	./.	0/1:97,67:29:164:0.409:2	0/1:0,126:29:126:1.00:2	0/1:117,71:29:188:0.378:2	0/1:65,55:29:120:0.458:2	0/1:0,120:29:121:1.00:2
chr3	1424745	rs4684146	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:79,65:31:144:0.451:2	0/1:49,40:32:89:0.449:2	./.	./.	0/1:99,51:31:150:0.340:2	./.	./.	0/1:96,60:31:156:0.385:2	./.	./.	0/1:90,78:32:168:0.464:2
chr3	1424850	rs2291100	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,20:30:21:0.952:2	0/1:69,65:31:134:0.485:2	./.	0/1:61,76:30:137:0.555:2	./.	./.	0/1:89,87:31:176:0.494:2	0/1:72,48:31:120:0.400:2	./.
chr3	1424987	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:33:81:0.049:2	./.	./.
chr3	3067850	rs7629924	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,8:32:13:0.615:2	./.	./.	./.	./.	./.	0/1:2,149:33:151:0.987:2	./.	./.
chr3	3067853	rs7639977	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,8:31:13:0.615:2	./.	./.	./.	./.	./.	0/1:2,148:32:150:0.987:2	./.	./.
chr3	3076401	rs6790908	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,72:31:73:0.986:2	0/1:0,32:30:32:1.00:2	./.	./.	0/1:54,49:30:103:0.476:2	0/1:52,38:31:90:0.422:2	0/1:61,77:30:138:0.558:2	0/1:0,121:30:121:1.00:2	./.	0/1:0,70:30:70:1.00:2	./.
chr3	3076443	rs6803232	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,84:29:84:1.00:2	0/1:0,40:29:40:1.00:2	0/1:1,12:26:13:0.923:2	./.	0/1:82,68:29:150:0.453:2	0/1:75,51:29:126:0.405:2	0/1:79,96:29:175:0.549:2	0/1:0,154:29:154:1.00:2	0/1:71,47:30:118:0.398:2	0/1:0,86:29:86:1.00:2	./.
chr3	3080611	rs10510251	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:34,29:33:63:0.460:2	0/1:14,17:32:31:0.548:2	./.	./.	0/1:51,49:32:100:0.490:2	./.	0/1:25,26:32:51:0.510:2	./.	./.	./.	./.
chr3	3081750	rs6802588	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,61:31:109:0.560:2	0/1:27,40:31:67:0.597:2	0/1:6,7:31:13:0.538:2	0/1:5,124:31:130:0.961:2	0/1:52,51:31:103:0.495:2	./.	0/1:55,44:30:99:0.444:2	./.	0/1:77,57:32:134:0.425:2	0/1:70,66:31:136:0.485:2	0/1:0,152:31:152:1.00:2
chr3	3081825	rs339285	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,123:29:123:1.00:2	0/1:0,70:29:70:1.00:2	0/1:0,17:29:17:1.00:2	0/1:0,151:29:151:1.00:2	0/1:0,122:28:122:1.00:2	0/1:0,140:28:140:1.00:2	0/1:0,149:29:149:1.00:2	0/1:84,71:29:155:0.458:2	0/1:74,63:30:138:0.460:2	0/1:0,114:29:115:1.00:2	0/1:0,158:29:158:1.00:2
chr3	3095492	rs200709524	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,9:15:47:0.191:2	./.	./.	./.	./.	0/1:47,10:12:57:0.175:2	./.	0/1:41,11:17:53:0.212:2	./.	./.	0/1:51,12:18:63:0.190:2
chr3	3139957	rs2290610	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,49:32:97:0.510:2	0/1:46,36:32:82:0.439:2	0/1:4,7:33:11:0.636:2	0/1:61,44:33:105:0.419:2	./.	0/1:46,51:32:97:0.526:2	./.	0/1:55,52:33:107:0.486:2	0/1:50,48:34:98:0.490:2	0/1:59,50:33:109:0.459:2	0/1:74,68:33:142:0.479:2
chr3	3170792	rs334773	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:33:72:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,105:33:105:1.00:2	0/1:1,77:32:78:0.987:2	0/1:0,104:32:104:1.00:2	0/1:0,93:33:93:1.00:2	0/1:0,137:33:137:1.00:2	0/1:0,86:33:86:1.00:2	0/1:0,86:33:86:1.00:2	0/1:0,88:33:88:1.00:2
chr3	3171622	rs150869212	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,20:29:42:0.476:2	./.	./.	./.	./.	./.	0/1:29,29:30:58:0.500:2
chr3	3189279	rs1705805	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,74:31:74:1.00:2	0/1:0,44:30:44:1.00:2	./.	0/1:1,83:31:84:0.988:2	0/1:36,23:29:59:0.390:2	0/1:1,72:30:73:0.986:2	0/1:1,61:31:62:0.984:2	0/1:35,30:31:65:0.462:2	0/1:38,41:31:79:0.519:2	0/1:42,34:31:76:0.447:2	0/1:66,55:31:121:0.455:2
chr3	3192647	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,4:32:133:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr3	3192694	rs201809570	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,11:17:72:0.153:2	./.	./.	./.	./.
chr3	3221322	rs200222965	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,15:12:107:0.142:2
chr3	3886501	rs187548325	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,67:32:162:0.414:2	./.	./.	./.	./.	./.	./.	./.
chr3	3886580	rs4685689	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:31:77:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,75:31:75:1.00:2	0/1:1,67:30:68:0.985:2	0/1:0,59:30:59:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,96:31:96:1.00:2
chr3	3886721	rs3749350	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,5:33:11:0.455:2	0/1:36,32:33:68:0.471:2	./.	0/1:37,31:32:68:0.456:2	0/1:30,20:33:50:0.400:2	./.	./.	0/1:2,47:33:49:0.959:2	0/1:30,37:32:67:0.552:2
chr3	3886784	rs113168029	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,32:31:72:0.444:2	./.	./.	./.	./.	./.
chr3	3886847	rs3749349	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,17:32:46:0.370:2	./.	0/1:20,20:32:40:0.500:2	0/1:28,10:32:38:0.263:2	./.	./.	0/1:0,33:33:33:1.00:2	0/1:40,11:34:51:0.216:2
chr3	3886919	rs3749348	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:32:13:0.385:2	./.	0/1:9,8:31:18:0.471:2	./.	./.	./.	0/1:0,17:32:17:1.00:2	0/1:21,6:33:27:0.222:2
chr3	3887093	rs9844909	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,11:31:19:0.579:2	./.	0/1:4,11:33:15:0.733:2	./.	0/1:9,15:34:24:0.625:2	./.	./.
chr3	3887171	rs75655400	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,14:31:25:0.560:2	./.	./.	./.	./.	./.	./.
chr3	3887508	rs35362954	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,36:29:83:0.434:2	0/1:30,25:29:55:0.455:2	./.	./.	./.	0/1:48,58:29:106:0.547:2
chr3	3887876	rs2120609	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,56:30:58:0.982:2	0/1:0,25:29:25:1.00:2	./.	0/1:27,36:30:63:0.571:2	0/1:31,23:29:54:0.426:2	0/1:35,29:30:64:0.453:2	./.	0/1:0,45:30:45:1.00:2	0/1:35,21:32:56:0.375:2	./.	0/1:43,29:29:72:0.403:2
chr3	3888429	rs34611357	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,17:32:52:0.333:2	./.	./.	./.	./.	./.	./.	./.
chr3	3888653	rs7648844	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,23:32:41:0.561:2	0/1:7,12:32:19:0.632:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	3889222	rs1872417	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,65:32:65:1.00:2
chr3	4345702	rs76956955	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,19:31:55:0.345:2	./.	./.	./.	./.	./.	./.
chr3	4345766	rs13099918	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:33,14:31:47:0.298:2	0/1:10,8:33:18:0.444:2	0/1:2,2:34:4:0.500:2	./.	0/1:15,19:31:34:0.559:2	./.	./.	0/1:35,19:32:54:0.352:2	0/1:19,26:34:45:0.578:2	0/1:0,40:33:40:1.00:2	0/1:29,32:33:61:0.525:2
chr3	4354697	rs6801634	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,47:31:106:0.443:2	0/1:59,58:31:117:0.496:2	0/1:53,46:31:99:0.465:2	./.	0/1:72,50:32:122:0.410:2	./.	./.
chr3	4354802	rs150691823	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,13:34:44:0.295:2	./.
chr3	4355483	rs6793896	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,8:34:21:0.381:2	./.	./.	./.	./.	./.	./.	./.
chr3	4358210	rs7647539	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,3:32:11:0.273:2	0/1:43,22:33:65:0.338:2	0/1:23,31:31:54:0.574:2	0/1:45,25:31:70:0.357:2	0/1:24,16:31:40:0.400:2	./.	0/1:28,21:33:49:0.429:2	0/1:2,43:32:45:0.956:2	0/1:41,26:31:67:0.388:2
chr3	4403837	rs2633852	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,14:34:37:0.378:2	0/1:18,5:33:23:0.217:2	./.	0/1:2,59:32:61:0.967:2	0/1:0,43:32:43:1.00:2	0/1:36,23:32:59:0.390:2	0/1:35,22:33:57:0.386:2	./.	0/1:37,27:33:64:0.422:2	0/1:33,30:32:63:0.476:2	0/1:39,42:32:81:0.519:2
chr3	4491007	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:106,6:31:112:0.054:2	./.	./.	./.	./.	./.	./.
chr3	4508742	rs2819590	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,4:30:12:0.333:2	0/1:4,8:30:12:0.667:2	0/1:2,3:31:5:0.600:2	0/1:7,5:32:12:0.417:2	0/1:9,3:32:12:0.250:2	0/1:2,5:30:7:0.714:2	0/1:4,6:32:10:0.600:2
chr3	4709097	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:31:127:0.031:2	./.	./.
chr3	4712413	rs2306875	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,39:30:40:1.00:2	0/1:0,15:32:15:1.00:2	./.	./.	0/1:0,16:31:16:1.00:2	0/1:5,8:27:13:0.615:2	./.	0/1:15,19:31:34:0.559:2	0/1:22,15:32:37:0.405:2	0/1:10,7:32:17:0.412:2	0/1:13,27:31:40:0.675:2
chr3	4716811	rs2306877	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:71,64:33:135:0.474:2	0/1:25,36:32:61:0.590:2	./.	./.	0/1:56,27:31:83:0.325:2	./.	./.	./.	./.	0/1:49,55:33:104:0.529:2	./.
chr3	4725969	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,9:16:44:0.205:2	./.	0/1:38,7:17:45:0.156:2	0/1:41,13:14:54:0.241:2	0/1:54,10:16:65:0.156:2	0/1:39,6:21:45:0.133:2	0/1:62,8:23:70:0.114:2
chr3	4725973	rs199876574	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,10:13:62:0.161:2	./.	./.	0/1:61,14:14:76:0.187:2
chr3	4725976	rs201072463	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,12:14:54:0.222:2	./.	./.	0/1:52,14:13:66:0.212:2	./.	./.	0/1:66,14:18:80:0.175:2
chr3	4817057	rs6442905	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:29:81:1.00:2	0/1:0,41:28:41:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,52:29:52:1.00:2	0/1:1,25:28:26:0.962:2	0/1:1,59:29:60:0.983:2	0/1:0,60:30:60:1.00:2	0/1:0,77:29:77:1.00:2	0/1:0,105:29:105:1.00:2
chr3	4829732	rs13079522	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:86,54:31:140:0.386:2	0/1:42,43:30:85:0.506:2	0/1:11,5:30:16:0.313:2	./.	./.	0/1:53,82:30:135:0.607:2	./.	0/1:61,63:30:124:0.508:2	./.	./.	0/1:0,140:31:140:1.00:2
chr3	4842231	rs2291862	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:36,22:31:58:0.379:2	0/1:14,17:32:31:0.548:2	./.	0/1:37,31:31:68:0.456:2	./.	0/1:5,57:31:62:0.919:2	./.	./.	0/1:32,34:32:66:0.515:2	./.	0/1:0,73:31:73:1.00:2
chr3	4856180	rs711631	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,34:30:64:0.531:2	0/1:17,8:29:25:0.320:2	0/1:0,11:30:11:1.00:2	0/1:2,77:30:79:0.975:2	0/1:0,89:29:89:1.00:2	./.	0/1:0,87:29:87:1.00:2	0/1:2,87:29:89:0.978:2	0/1:0,82:30:82:1.00:2	0/1:0,58:29:58:1.00:2	0/1:0,64:29:64:1.00:2
chr3	4856234	rs901854	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,21:30:46:0.457:2	0/1:11,4:30:15:0.267:2	0/1:0,12:29:12:1.00:2	0/1:23,30:30:53:0.566:2	./.	./.	./.	0/1:0,55:29:55:1.00:2	0/1:28,29:32:57:0.509:2	0/1:0,34:29:34:1.00:2	0/1:0,38:30:38:1.00:2
chr3	5021403	rs2271566	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,12:31:17:0.706:2	./.	./.	./.	0/1:6,10:31:16:0.625:2	./.	./.
chr3	5024771	rs908078	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,17:33:35:0.486:2	./.	./.	./.	0/1:21,12:34:33:0.364:2	./.	./.
chr3	5164207	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:31:197:0.025:2	./.	./.	./.
chr3	5164221	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:27:197:0.025:2	./.	./.	./.
chr3	5164258	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,5:31:122:0.041:2	./.	./.	./.
chr3	5229643	rs144177905	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,5:24:9:0.556:2	./.	./.	./.
chr3	5229860	rs199602685	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,33:33:60:0.550:2	./.	./.	./.	./.	./.	./.	./.
chr3	5241309	rs410509	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:33:63:1.00:2	0/1:1,39:33:40:0.975:2	0/1:0,11:33:11:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,60:33:60:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,75:33:75:1.00:2
chr3	5244711	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:33:41:0.098:2	./.
chr3	6903297	rs3749380	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:30:46:1.00:2	0/1:0,29:31:29:1.00:2	0/1:6,3:26:9:0.333:2	0/1:45,43:29:88:0.489:2	0/1:3,127:30:130:0.977:2	0/1:62,61:30:123:0.496:2	./.	0/1:71,43:31:114:0.377:2	./.	./.	./.
chr3	7494417	rs2229902	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:55,35:32:90:0.389:2	0/1:32,37:31:69:0.536:2	./.	./.	0/1:45,52:31:99:0.536:2	./.	0/1:55,43:31:98:0.439:2	0/1:67,50:31:117:0.427:2	0/1:0,104:33:104:1.00:2	0/1:2,82:32:84:0.976:2	./.
chr3	7620168	rs34373930	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,40:33:90:0.444:2	./.	./.	./.	0/1:2,85:33:87:0.977:2	./.
chr3	7620382	rs7614915	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,38:32:85:0.447:2	./.	./.	./.	0/1:1,40:33:42:0.976:2	./.
chr3	7620789	rs1485175	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,66:29:147:0.449:2	0/1:44,42:28:86:0.488:2	0/1:10,6:29:16:0.375:2	0/1:78,70:28:148:0.473:2	0/1:69,59:29:129:0.461:2	0/1:73,93:28:166:0.560:2	./.	0/1:3,168:28:171:0.982:2	./.	0/1:0,155:28:155:1.00:2	0/1:94,74:28:168:0.440:2
chr3	7620828	rs1485174	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,74:32:155:0.477:2	./.	./.	./.	0/1:1,138:32:140:0.993:2	./.
chr3	7728055	rs182447901	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,5:26:174:0.029:2	./.	./.	./.	./.
chr3	8590313	rs3088339	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,40:31:88:0.455:2	./.	0/1:34,27:30:61:0.443:2	./.	./.	0/1:40,22:30:64:0.355:2	0/1:31,34:30:66:0.523:2	./.
chr3	8675539	rs2276800	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,28:31:59:0.475:2	0/1:39,40:31:79:0.506:2	0/1:38,50:31:88:0.568:2	./.	./.	./.
chr3	8775457	rs2072583	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:35,30:31:65:0.462:2	0/1:21,20:32:41:0.488:2	0/1:7,3:31:10:0.300:2	./.	0/1:36,20:31:56:0.357:2	0/1:35,31:30:66:0.470:2	./.	./.	./.	./.	0/1:39,41:30:80:0.513:2
chr3	8775589	rs1974763	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,60:31:120:0.500:2	./.	./.	0/1:41,51:32:92:0.554:2	0/1:61,72:31:133:0.541:2	0/1:57,60:32:117:0.513:2	./.	./.
chr3	8775661	rs1008642	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:30,14:32:44:0.318:2	0/1:18,12:32:30:0.400:2	0/1:6,3:33:9:0.333:2	./.	0/1:43,22:31:65:0.338:2	0/1:34,29:32:63:0.460:2	0/1:50,21:30:71:0.296:2	./.	./.	./.	0/1:39,28:32:67:0.418:2
chr3	8787220	rs13087941	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,38:31:71:0.535:2	0/1:36,36:31:72:0.500:2	0/1:23,27:31:50:0.540:2	./.	0/1:29,16:32:45:0.356:2
chr3	8809184	rs237902	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,26:29:47:0.553:2	0/1:4,15:31:19:0.789:2	./.	./.	./.	0/1:0,53:30:53:1.00:2	0/1:49,36:30:85:0.424:2	0/1:40,46:29:86:0.535:2	./.	0/1:24,28:30:52:0.538:2	./.
chr3	8809222	rs4686302	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,100:30:198:0.505:2	0/1:96,99:29:195:0.508:2	0/1:66,42:30:108:0.389:2	./.	./.
chr3	8809703	rs2228485	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:30:28:1.00:2	0/1:0,27:30:27:1.00:2	0/1:1,3:30:4:0.750:2	0/1:0,56:30:56:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,50:28:50:1.00:2	0/1:25,32:30:57:0.561:2	0/1:30,28:30:58:0.483:2	0/1:29,27:31:56:0.482:2	0/1:0,42:30:42:1.00:2	0/1:0,33:31:33:1.00:2
chr3	8955389	rs373572	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,99:33:99:1.00:2	0/1:0,35:32:35:1.00:2	0/1:4,5:32:9:0.556:2	0/1:51,40:32:91:0.440:2	0/1:0,78:31:78:1.00:2	0/1:52,41:31:93:0.441:2	0/1:0,59:32:59:1.00:2	0/1:55,62:33:117:0.530:2	0/1:0,108:33:108:1.00:2	0/1:55,50:33:105:0.476:2	0/1:3,126:32:129:0.977:2
chr3	9005078	rs615967	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:31:73:1.00:2	0/1:0,35:31:35:1.00:2	0/1:6,3:31:9:0.333:2	0/1:43,62:31:105:0.590:2	0/1:1,63:31:64:0.984:2	0/1:40,38:31:78:0.487:2	./.	0/1:39,61:31:100:0.610:2	0/1:1,71:32:72:0.986:2	0/1:31,39:31:70:0.557:2	0/1:26,28:31:54:0.519:2
chr3	9032348	rs201777874	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,51:28:98:0.520:2	0/1:32,42:30:75:0.568:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	9055172	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.	./.	./.	./.	./.
chr3	9079714	rs867528	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,33:29:65:0.508:2	0/1:20,14:29:34:0.412:2	./.	./.	./.	./.	./.	./.	0/1:19,20:30:39:0.513:2	./.	0/1:25,32:28:57:0.561:2
chr3	9099989	rs61747289	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,75:32:139:0.540:2	./.
chr3	9166594	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,4:32:49:0.082:2	./.	./.	./.	./.	./.	./.
chr3	9166595	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:32:71:0.056:2	./.	./.	./.
chr3	9406836	rs1054975	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,36:29:75:0.480:2	0/1:29,25:29:54:0.463:2	0/1:11,13:31:24:0.542:2	0/1:28,50:29:78:0.641:2	0/1:2,67:28:69:0.971:2	0/1:0,80:30:80:1.00:2	0/1:46,33:29:79:0.418:2	./.	0/1:0,103:30:103:1.00:2	0/1:34,26:28:60:0.433:2	0/1:0,89:29:89:1.00:2
chr3	9422210	rs2596916	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,49:33:91:0.538:2	0/1:17,24:33:41:0.585:2	0/1:8,9:33:17:0.529:2	0/1:66,58:33:124:0.468:2	0/1:0,55:32:55:1.00:2	0/1:0,76:33:76:1.00:2	0/1:40,21:33:61:0.344:2	./.	0/1:0,101:34:101:1.00:2	0/1:49,28:33:77:0.364:2	0/1:1,143:33:145:0.993:2
chr3	9425911	rs1129170	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,23:33:40:0.575:2	0/1:13,4:32:17:0.235:2	./.	0/1:18,20:32:38:0.526:2	0/1:0,27:31:27:1.00:2	0/1:0,21:31:21:1.00:2	0/1:20,9:31:29:0.310:2	./.	0/1:0,31:32:31:1.00:2	0/1:25,18:31:43:0.419:2	0/1:0,35:32:35:1.00:2
chr3	9425944	rs1046788	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,27:31:54:0.500:2	./.	./.	./.	0/1:0,67:30:67:1.00:2	./.	0/1:24,30:30:54:0.556:2	./.
chr3	9426224	rs1129174	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:191,4:33:195:0.021:2	./.	0/1:16,9:32:25:0.360:2	0/1:100,96:31:196:0.490:2	./.	./.	./.	0/1:2,179:31:181:0.989:2	./.	0/1:107,86:32:193:0.446:2	./.
chr3	9517369	rs11542009	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,24:32:57:0.421:2	0/1:13,11:31:24:0.458:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	9517577	rs17747739	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.	./.	./.	./.	./.	0/1:74,59:32:133:0.444:2	./.	./.
chr3	9543919	rs367990615	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:32:122:0.033:2	./.	./.	./.	./.	./.
chr3	9719654	rs188918962	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,44:30:87:0.506:2	./.	./.
chr3	9739461	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:31:43:0.093:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	9746481	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:24:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	9747392	rs78883514	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,7:31:18:0.389:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	9768336	rs3868893	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,11:31:23:0.478:2	./.	./.	./.	0/1:2,152:32:154:0.987:2	./.	./.	0/1:90,74:32:165:0.451:2	./.
chr3	9769008	rs3891072	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:30:11:0.455:2	./.	./.	./.	0/1:1,58:31:59:0.983:2	./.	./.	0/1:19,33:31:52:0.635:2	./.
chr3	9771223	rs200361798	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,3:34:69:0.043:2
chr3	9781473	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,93:29:169:0.554:2	./.	./.	./.	./.	./.
chr3	9785266	rs142213134	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,30:32:45:0.667:2	./.	./.
chr3	9798475	rs113561019	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,60:31:127:0.472:2	0/1:47,37:32:84:0.440:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	9798773	rs1052133	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,31:32:32:0.969:2	0/1:30,23:32:53:0.434:2	./.	0/1:25,16:34:41:0.390:2	./.
chr3	9854937	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:32:142:0.028:2	./.	./.
chr3	9867625	rs3732527	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,158:32:158:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,151:32:151:1.00:2	0/1:1,154:32:155:0.994:2	0/1:0,162:31:162:1.00:2	./.	0/1:79,75:32:154:0.487:2	0/1:1,162:32:163:0.994:2	./.	0/1:1,159:31:162:0.994:2
chr3	9870857	rs2290303	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,81:31:83:0.976:2	0/1:1,58:31:59:0.983:2	0/1:7,11:31:18:0.611:2	0/1:90,68:30:158:0.430:2	0/1:6,174:30:180:0.967:2	0/1:0,156:30:156:1.00:2	./.	./.	0/1:79,68:31:147:0.463:2	0/1:74,45:31:119:0.378:2	0/1:2,106:31:108:0.981:2
chr3	9871030	rs2290305	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,61:32:63:0.968:2	0/1:0,24:32:24:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,64:32:64:1.00:2	0/1:1,95:31:96:0.990:2	0/1:2,87:32:89:0.978:2	./.	0/1:64,46:31:110:0.418:2	0/1:0,51:33:51:1.00:2	0/1:30,19:33:49:0.388:2	0/1:0,45:32:45:1.00:2
chr3	9874914	rs115917139	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,26:31:64:0.406:2	./.	./.	./.	./.	./.
chr3	9876919	rs1057278	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,22:31:52:0.423:2	./.	./.	./.	0/1:30,25:30:55:0.455:2	0/1:23,18:31:41:0.439:2	./.	./.
chr3	9876987	rs1057281	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,10:32:34:0.294:2	./.	./.	./.	0/1:14,17:30:31:0.548:2	0/1:33,11:32:44:0.250:2	./.	./.
chr3	9881922	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:31:156:0.026:2	./.	./.	./.
chr3	9883679	rs149627688	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:34:83:0.048:2	./.	./.
chr3	9908935	rs17222536	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,47:31:114:0.412:2	./.	./.	./.	./.	./.
chr3	9918861	rs456168	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,21:30:40:0.525:2	0/1:17,11:30:28:0.393:2	./.	./.	./.	./.
chr3	9920138	rs17851444	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,52:31:127:0.409:2	./.	./.	./.	0/1:4,141:32:145:0.972:2	0/1:100,55:33:156:0.355:2	0/1:62,58:32:120:0.483:2	./.
chr3	9934605	rs279553	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,140:32:140:1.00:2	0/1:0,104:31:105:1.00:2	0/1:2,14:31:16:0.875:2	0/1:91,103:32:195:0.531:2	0/1:2,192:31:195:0.990:2	./.	0/1:98,99:31:197:0.503:2	./.	0/1:98,83:32:181:0.459:2	0/1:74,81:32:155:0.523:2	0/1:0,185:31:185:1.00:2
chr3	9952706	rs279572	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:30:49:1.00:2	0/1:0,31:29:31:1.00:2	0/1:1,3:30:4:0.750:2	0/1:24,30:30:54:0.556:2	0/1:31,30:30:61:0.492:2	./.	0/1:30,31:30:61:0.508:2	./.	0/1:20,30:30:50:0.600:2	0/1:19,18:31:37:0.486:2	0/1:40,28:28:68:0.412:2
chr3	9952788	rs279571	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,70:31:71:0.986:2	0/1:0,40:30:40:1.00:2	0/1:3,7:31:10:0.700:2	0/1:53,25:30:78:0.321:2	0/1:25,27:30:52:0.519:2	./.	0/1:47,27:31:74:0.365:2	./.	0/1:35,33:30:69:0.485:2	0/1:29,35:30:64:0.547:2	0/1:1,86:29:87:0.989:2
chr3	9956279	rs455863	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:32:65:1.00:2	0/1:0,31:32:31:1.00:2	0/1:5,7:31:12:0.583:2	0/1:47,65:32:112:0.580:2	0/1:98,61:32:159:0.384:2	./.	0/1:76,67:32:143:0.469:2	./.	0/1:63,53:33:117:0.457:2	0/1:57,37:33:94:0.394:2	0/1:42,48:32:90:0.533:2
chr3	9957455	rs1056286	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.
chr3	9959713	rs4686383	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:35,38:32:73:0.521:2	0/1:39,26:33:65:0.400:2	0/1:4,7:32:11:0.636:2	./.	./.	./.	./.	./.	0/1:64,70:33:134:0.522:2	./.	0/1:41,48:32:89:0.539:2
chr3	9960070	rs708567	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,56:30:56:1.00:2	0/1:0,27:31:27:1.00:2	./.	0/1:35,29:30:64:0.453:2	0/1:42,16:29:58:0.276:2	./.	0/1:38,32:30:70:0.457:2	./.	0/1:30,26:31:56:0.464:2	0/1:31,22:30:53:0.415:2	0/1:35,27:31:62:0.435:2
chr3	9965582	rs75692599	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,50:32:110:0.455:2	./.	./.	./.
chr3	9970031	rs279549	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,9:29:9:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,13:28:13:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,9:28:9:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,8:31:8:1.00:2
chr3	9970158	rs279548	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:29:10:1.00:2	0/1:0,8:30:8:1.00:2	./.	./.	0/1:5,3:31:8:0.375:2	./.	0/1:4,6:32:10:0.600:2	./.	./.	./.	./.
chr3	9974315	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,4:32:87:0.046:2	./.	./.	./.	./.	./.	./.	./.
chr3	9974543	rs148575246	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,22:31:44:0.500:2	./.	./.	./.	./.	./.	./.
chr3	9974868	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,22:32:39:0.579:2	0/1:6,8:31:14:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	9975247	rs183956	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,4:32:4:1.00:2	./.	0/1:0,2:31:2:1.00:2	0/1:0,3:34:3:1.00:2	0/1:0,2:30:2:1.00:2	./.	0/1:0,5:31:5:1.00:2	./.	0/1:0,3:33:3:1.00:2	0/1:0,4:33:4:1.00:2
chr3	9976159	rs279552	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:32:33:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,47:33:47:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,43:33:43:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,45:32:45:1.00:2
chr3	9985096	rs76764016	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,3:31:24:0.125:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	9985656	rs3774207	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,31:32:61:0.508:2	0/1:23,23:31:46:0.500:2	./.	./.	./.	0/1:47,39:30:86:0.453:2	./.	./.	./.	0/1:30,26:31:56:0.464:2	0/1:56,55:32:111:0.495:2
chr3	9988175	rs61740128	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,19:29:47:0.404:2	./.	./.	./.	0/1:16,28:31:44:0.636:2	./.	0/1:9,20:29:29:0.690:2	./.
chr3	9990800	rs59465469	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,13:31:31:0.419:2	0/1:10,8:32:18:0.444:2	./.	./.	./.	0/1:21,14:33:35:0.400:2	./.	./.	./.	0/1:18,17:32:35:0.486:2	0/1:17,13:30:31:0.433:2
chr3	9991101	rs55847233	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,12:33:25:0.480:2	0/1:10,9:33:19:0.474:2	./.	./.	./.	0/1:38,22:32:60:0.367:2	./.	./.	./.	0/1:24,17:34:41:0.415:2	0/1:25,29:32:54:0.537:2
chr3	9991163	rs55847610	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,19:32:32:0.594:2	0/1:6,6:32:12:0.500:2	./.	./.	./.	0/1:24,13:31:37:0.351:2	./.	./.	./.	0/1:19,7:33:26:0.269:2	0/1:16,11:33:27:0.407:2
chr3	9991388	rs279601	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:32:87:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,109:33:109:1.00:2	0/1:1,107:32:108:0.991:2	0/1:0,136:32:137:1.00:2	0/1:0,156:32:156:1.00:2	0/1:0,133:32:133:1.00:2	0/1:0,125:33:125:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,110:32:110:1.00:2
chr3	10049098	rs200467492	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:43,11:12:54:0.204:2	./.	./.	./.	0/1:39,10:19:50:0.204:2	./.	0/1:61,12:13:73:0.164:2	0/1:76,11:14:87:0.126:2	0/1:59,15:16:75:0.203:2	0/1:44,8:18:52:0.154:2	0/1:61,17:18:78:0.218:2
chr3	10049287	rs2272118	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,79:27:146:0.541:2	0/1:49,44:27:93:0.473:2	./.	./.	./.	0/1:76,69:27:145:0.476:2	./.	./.	./.	0/1:104,57:28:161:0.354:2	0/1:78,72:27:150:0.480:2
chr3	10088266	rs72492997	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,9:32:172:0.052:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	10088299	rs112887807	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:162,11:29:173:0.064:2	0/1:152,17:31:169:0.101:2	0/1:58,6:30:64:0.094:2	0/1:164,18:30:182:0.099:2	0/1:178,9:29:187:0.048:2	0/1:137,36:30:173:0.208:2	0/1:151,23:30:174:0.132:2	0/1:176,11:31:187:0.059:2	0/1:164,18:29:182:0.099:2	0/1:143,21:30:165:0.128:2	0/1:159,21:30:180:0.117:2
chr3	10088308	rs72492998	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:159,19:33:179:0.107:2	0/1:159,23:32:182:0.126:2	0/1:57,6:32:63:0.095:2	0/1:162,26:33:188:0.138:2	0/1:172,15:32:187:0.080:2	0/1:130,49:32:179:0.274:2	0/1:143,34:33:178:0.192:2	0/1:173,16:32:189:0.085:2	0/1:165,20:32:185:0.108:2	0/1:144,25:32:169:0.148:2	0/1:163,26:33:189:0.138:2
chr3	10088343	rs73126218	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:161,30:32:191:0.157:2	0/1:137,22:31:160:0.138:2	0/1:46,6:30:52:0.115:2	0/1:157,31:32:188:0.165:2	0/1:154,29:32:183:0.158:2	0/1:128,58:32:186:0.312:2	0/1:140,50:32:190:0.263:2	0/1:177,18:32:195:0.092:2	0/1:163,25:32:188:0.133:2	0/1:128,51:32:179:0.285:2	0/1:156,35:32:191:0.183:2
chr3	10088404	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:121,12:31:133:0.090:2	0/1:100,9:32:109:0.083:2	./.	0/1:91,11:32:102:0.108:2	0/1:125,16:31:141:0.113:2	0/1:102,17:30:119:0.143:2	0/1:96,18:31:114:0.158:2	./.	0/1:103,4:34:107:0.037:2	0/1:96,23:32:119:0.193:2	0/1:108,12:32:120:0.100:2
chr3	10089723	rs12330369	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,16:32:97:0.165:2	0/1:42,9:32:51:0.176:2	0/1:13,4:32:17:0.235:2	0/1:57,10:31:67:0.149:2	0/1:63,8:32:72:0.113:2	0/1:63,22:31:85:0.259:2	0/1:65,29:32:95:0.309:2	0/1:76,15:31:91:0.165:2	0/1:88,22:33:110:0.200:2	0/1:59,24:33:83:0.289:2	0/1:89,32:32:121:0.264:2
chr3	10091084	rs375412395	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,9:32:196:0.046:2	./.	./.	./.	./.	./.
chr3	10091153	rs35652360	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:158,13:30:171:0.076:2	./.	0/1:169,9:32:178:0.051:2	./.	./.	0/1:146,15:30:161:0.093:2	0/1:185,10:29:195:0.051:2
chr3	10094159	rs145522204	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,29:30:49:0.592:2	./.	./.	./.	0/1:29,35:29:64:0.547:2	./.	./.	./.
chr3	10106532	rs3864017	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,12:32:91:0.132:2	0/1:90,12:32:102:0.118:2	./.	./.	./.	0/1:74,18:32:92:0.196:2	./.
chr3	10142949	rs3172417	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,16:31:16:1.00:2	0/1:89,83:32:172:0.483:2	0/1:81,85:32:166:0.512:2	./.	./.	./.	0/1:77,93:33:170:0.547:2	./.	0/1:101,76:33:178:0.429:2
chr3	10146444	rs368053372	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,4:32:100:0.040:2	./.	./.	./.	./.	./.	./.
chr3	10157468	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:33:153:0.026:2
chr3	10251340	rs464286	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,23:29:23:1.00:2	0/1:0,16:29:16:1.00:2	./.	./.	./.	0/1:20,13:30:33:0.394:2	0/1:16,9:29:25:0.360:2	./.	0/1:30,13:30:43:0.302:2	./.	./.
chr3	10255002	rs35060588	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,29:28:56:0.518:2	./.	0/1:40,27:29:67:0.403:2	./.	./.	./.	./.
chr3	10264480	rs3844283	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,38:32:75:0.507:2	./.	0/1:36,39:31:75:0.520:2	./.	0/1:21,32:32:53:0.604:2	./.	./.
chr3	10276163	rs708035	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,91:31:91:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,9:31:9:1.00:2	./.	0/1:0,150:31:150:1.00:2	0/1:83,63:31:146:0.432:2	0/1:0,147:31:147:1.00:2	./.	0/1:0,127:32:127:1.00:2	0/1:71,54:32:125:0.432:2	./.
chr3	10276185	rs11465927	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:32:13:0.308:2	./.	0/1:90,66:32:156:0.423:2	./.	./.	./.	./.	./.	./.
chr3	10280465	rs9854688	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,40:30:90:0.444:2
chr3	10302172	rs394558	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,59:31:59:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,10:31:10:1.00:2	./.	0/1:0,86:31:86:1.00:2	0/1:44,43:31:89:0.494:2	0/1:58,58:31:116:0.500:2	./.	0/1:0,73:31:73:1.00:2	0/1:36,20:31:56:0.357:2	0/1:27,27:31:54:0.500:2
chr3	10311939	rs2075352	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:2,73:32:75:0.973:2	0/1:3,31:33:34:0.912:2	0/1:8,3:33:11:0.273:2	./.	./.	0/1:14,45:32:59:0.763:2	./.	./.	./.	./.	./.
chr3	10312507	rs2075353	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,48:33:48:1.00:2	0/1:0,32:32:32:1.00:2	0/1:4,6:32:10:0.600:2	./.	./.	0/1:26,19:32:45:0.422:2	./.	./.	./.	./.	./.
chr3	10331457	rs696217	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,50:31:50:1.00:2	0/1:0,24:32:24:1.00:2	./.	./.	./.	0/1:27,29:30:56:0.518:2	./.	./.	./.	./.	./.
chr3	10353550	rs35670	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,35:31:36:0.972:2	./.	0/1:18,19:32:37:0.514:2	./.	0/1:29,30:34:59:0.508:2	0/1:22,8:29:30:0.267:2	0/1:18,10:32:28:0.357:2
chr3	10353626	rs35671	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,10:30:27:0.370:2	./.	0/1:4,166:31:170:0.976:2	./.	0/1:116,79:31:195:0.405:2	./.	0/1:84,64:33:148:0.432:2	0/1:57,46:31:103:0.447:2	0/1:70,62:31:132:0.470:2
chr3	10379923	rs35678	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:30:12:0.583:2	./.	0/1:2,81:31:83:0.976:2	./.	0/1:43,33:32:76:0.434:2	./.	0/1:0,70:32:70:1.00:2	0/1:20,29:33:49:0.592:2	0/1:34,38:32:72:0.528:2
chr3	10413601	rs2289273	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,181:30:184:0.984:2	0/1:0,158:31:158:1.00:2	./.	./.	./.	0/1:108,86:31:194:0.443:2	./.	./.	./.	./.	./.
chr3	10413715	rs2289274	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:2,151:31:153:0.987:2	0/1:3,94:32:97:0.969:2	0/1:18,12:30:30:0.400:2	./.	./.	0/1:99,73:31:172:0.424:2	./.	./.	./.	0/1:84,73:32:157:0.465:2	0/1:97,68:31:167:0.412:2
chr3	10420087	rs751122	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,38:32:38:1.00:2	0/1:0,23:32:23:1.00:2	./.	./.	0/1:30,26:31:56:0.464:2	0/1:24,14:33:38:0.368:2	./.	./.	0/1:0,48:33:48:1.00:2	0/1:36,4:29:40:0.100:2	./.
chr3	10443827	rs13084776	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.	./.	./.	./.	./.	./.	0/1:20,15:32:35:0.429:2	0/1:31,29:31:61:0.483:2
chr3	10885920	rs2304725	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,141:30:146:0.966:2	0/1:3,155:31:158:0.981:2	./.	0/1:58,46:31:104:0.442:2	./.
chr3	10960044	rs143086604	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:184,12:31:196:0.061:2	./.	./.	./.	./.	./.	./.
chr3	10967739	rs2272395	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,129:32:129:1.00:2	0/1:91,83:32:175:0.477:2	0/1:0,158:32:159:1.00:2	./.	./.	0/1:79,68:33:147:0.463:2	0/1:66,46:32:112:0.411:2	0/1:0,136:31:136:1.00:2
chr3	10974903	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:31:147:0.027:2	./.	./.	./.
chr3	10976876	rs2245532	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,66:31:133:0.496:2	0/1:1,122:31:123:0.992:2	./.	./.	0/1:50,56:31:106:0.528:2	0/1:0,64:31:64:1.00:2	0/1:0,99:30:99:1.00:2
chr3	11059130	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,3:33:56:0.054:2	./.
chr3	11064024	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:32:80:0.050:2	./.
chr3	11301791	rs2067468	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,27:31:56:0.482:2	./.	./.	./.	./.	./.
chr3	11302884	rs1809049	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,19:31:50:0.380:2	./.	./.	./.	0/1:12,15:31:27:0.556:2	./.
chr3	11302933	rs346068	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:14,7:33:21:0.333:2	0/1:9,12:33:21:0.571:2	./.	0/1:0,18:33:18:1.00:2	./.	0/1:0,30:33:30:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,25:32:25:1.00:2	0/1:5,4:32:9:0.444:2	0/1:0,32:31:32:1.00:2
chr3	11303437	rs346069	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	0/1:0,2:33:2:1.00:2	0/1:0,8:30:8:1.00:2	./.	./.	./.	0/1:0,3:34:3:1.00:2
chr3	11303874	rs346070	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:104,74:32:179:0.416:2	0/1:54,53:32:107:0.495:2	0/1:2,33:32:35:0.943:2	0/1:0,156:33:156:1.00:2	./.	0/1:1,176:32:177:0.994:2	0/1:1,178:33:179:0.994:2	0/1:3,181:32:184:0.984:2	0/1:1,177:33:178:0.994:2	0/1:113,63:33:176:0.358:2	0/1:0,167:32:167:1.00:2
chr3	11304575	rs3732941	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,55:29:127:0.433:2	./.	./.	./.	0/1:43,50:30:93:0.538:2	./.
chr3	11400019	rs36117895	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,37:30:81:0.457:2	./.	./.	./.	./.	./.
chr3	11402126	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:31:79:0.051:2	./.	./.	./.	./.	./.
chr3	11596302	rs8154	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:19,32:29:51:0.627:2	0/1:13,15:27:28:0.536:2	0/1:6,7:30:13:0.538:2	./.	0/1:1,68:28:69:0.986:2	0/1:24,20:28:44:0.455:2	0/1:42,31:28:73:0.425:2	./.	0/1:24,22:28:46:0.478:2	0/1:13,9:30:22:0.409:2	./.
chr3	11596348	rs14016	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	0/1:19,17:31:36:0.472:2	./.	./.	./.	./.	./.
chr3	11643465	rs2276749	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:33:75:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,117:32:117:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,93:33:93:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,89:32:89:1.00:2
chr3	11871215	rs11551661	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,20:30:43:0.465:2	./.	./.	./.	./.	./.	./.	./.
chr3	11880760	rs7641243	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,25:34:50:0.500:2	./.	0/1:15,12:34:27:0.444:2	./.	./.	0/1:33,25:34:58:0.431:2	./.	./.
chr3	11887991	rs408600	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:32:70:1.00:2	0/1:0,37:31:37:1.00:2	0/1:5,4:31:9:0.444:2	0/1:75,59:32:134:0.440:2	0/1:0,100:32:100:1.00:2	0/1:43,54:32:97:0.557:2	0/1:87,57:32:144:0.396:2	0/1:87,54:32:142:0.383:2	0/1:60,67:33:128:0.528:2	0/1:0,72:32:72:1.00:2	0/1:49,35:29:84:0.417:2
chr3	12046076	rs2618395	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,15:31:15:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,16:29:16:1.00:2
chr3	12229015	rs794999	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,32:27:32:1.00:2	0/1:0,24:27:24:1.00:2	./.	0/1:1,37:27:38:0.974:2	0/1:0,32:28:32:1.00:2	./.	0/1:0,26:29:26:1.00:2	0/1:1,30:28:31:0.968:2	0/1:29,21:30:50:0.420:2	0/1:0,35:27:35:1.00:2	0/1:11,7:30:18:0.389:2
chr3	12229092	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:34:131:0.031:2	./.	./.	./.	./.
chr3	12232074	rs310764	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:30:64:1.00:2	0/1:0,56:30:56:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,112:30:112:1.00:2	0/1:0,80:30:80:1.00:2	0/1:0,64:30:64:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,96:29:96:1.00:2	0/1:0,84:31:84:1.00:2	0/1:0,91:30:91:1.00:2	0/1:0,91:31:91:1.00:2
chr3	12393125	rs1801282	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,30:31:70:0.429:2	./.	./.	./.	0/1:64,42:29:106:0.396:2
chr3	12475557	rs3856806	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,66:31:121:0.545:2	./.	./.	./.	./.	./.	./.	0/1:50,49:32:99:0.495:2
chr3	12531421	rs12495784	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,18:31:55:0.327:2	./.	./.	./.	./.	0/1:29,12:32:42:0.293:2
chr3	12531461	rs78685815	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,22:32:65:0.338:2	./.	./.	./.	./.	0/1:30,32:33:62:0.516:2
chr3	12544779	rs77899976	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,68:32:137:0.496:2
chr3	12544829	rs33955793	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,70:31:142:0.493:2	./.	./.	./.	0/1:66,68:32:135:0.507:2	./.	./.
chr3	12544856	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:32:137:0.029:2	./.	./.	./.	./.	./.
chr3	12545091	rs3796329	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,52:28:110:0.473:2
chr3	12560560	rs17036879	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,17:31:40:0.425:2
chr3	12613866	rs2648307	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,52:28:52:1.00:2	0/1:0,22:29:22:1.00:2	./.	0/1:0,43:29:43:1.00:2	0/1:24,22:28:46:0.478:2	0/1:2,59:28:61:0.967:2	0/1:46,27:29:73:0.370:2	./.	0/1:0,48:29:48:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,41:28:41:1.00:2
chr3	12641737	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:32:86:0.047:2	./.	./.	./.	./.	./.
chr3	12660185	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:31:102:0.039:2	./.
chr3	12838293	rs12631514	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,56:32:56:1.00:2	0/1:0,42:31:42:1.00:2	./.	0/1:0,79:32:79:1.00:2	0/1:0,75:30:75:1.00:2	0/1:50,46:32:96:0.479:2	0/1:60,50:32:110:0.455:2	0/1:0,106:31:106:1.00:2	0/1:62,38:32:100:0.380:2	0/1:42,40:32:82:0.488:2	0/1:41,46:33:87:0.529:2
chr3	12848822	rs11718898	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,87:33:90:0.989:2	0/1:0,62:32:62:1.00:2	0/1:9,7:32:16:0.438:2	0/1:0,176:33:176:1.00:2	0/1:1,188:32:189:0.995:2	0/1:0,166:32:166:1.00:2	0/1:104,88:32:192:0.458:2	0/1:1,190:32:191:0.995:2	0/1:90,83:33:173:0.480:2	0/1:74,71:32:145:0.490:2	0/1:0,115:33:115:1.00:2
chr3	12848913	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:32:118:0.034:2	./.	./.
chr3	12856856	rs2305398	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,159:29:160:0.994:2	0/1:1,96:29:97:0.990:2	0/1:12,14:29:26:0.538:2	0/1:2,178:29:180:0.989:2	0/1:1,189:29:190:0.995:2	0/1:1,181:29:182:0.995:2	0/1:97,97:28:194:0.500:2	0/1:5,183:28:188:0.973:2	0/1:86,99:30:185:0.535:2	0/1:91,102:29:193:0.528:2	0/1:1,180:27:181:0.994:2
chr3	12857493	rs2305397	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,75:32:75:1.00:2	0/1:2,36:31:38:0.947:2	./.	0/1:0,108:31:108:1.00:2	0/1:1,127:32:128:0.992:2	0/1:63,50:31:113:0.442:2	0/1:74,66:32:140:0.471:2	0/1:8,129:31:137:0.942:2	0/1:65,55:33:121:0.458:2	0/1:57,28:32:85:0.329:2	0/1:49,46:32:95:0.484:2
chr3	12858028	rs3732675	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,56:32:56:1.00:2	0/1:0,35:32:35:1.00:2	./.	0/1:0,100:32:100:1.00:2	0/1:1,130:32:131:0.992:2	0/1:0,89:32:89:1.00:2	0/1:73,54:32:127:0.425:2	0/1:1,120:32:121:0.992:2	0/1:68,38:33:106:0.358:2	0/1:41,32:32:73:0.438:2	0/1:54,37:30:91:0.407:2
chr3	12858687	rs62637653	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,27:31:50:0.540:2
chr3	12858780	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:29:121:0.033:2	./.	./.
chr3	12858822	rs3732677	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,51:29:114:0.447:2	./.	./.	./.	./.	./.
chr3	12858966	rs17037287	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,10:30:29:0.345:2	./.	./.	./.	./.	./.	./.
chr3	12859004	rs3732678	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,49:32:50:0.980:2	0/1:1,34:31:35:0.971:2	./.	0/1:0,72:32:72:1.00:2	0/1:3,53:32:56:0.946:2	0/1:0,46:32:46:1.00:2	0/1:26,29:30:55:0.527:2	0/1:0,52:31:52:1.00:2	0/1:40,38:32:78:0.487:2	0/1:34,13:32:47:0.277:2	0/1:1,36:31:37:0.973:2
chr3	12859007	rs183560231	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,17:29:38:0.447:2
chr3	12861586	rs4684883	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,12:33:46:0.261:2	0/1:43,20:32:63:0.317:2	./.	./.	./.	0/1:34,17:34:51:0.333:2	./.	./.
chr3	12861608	rs3817121	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,17:32:54:0.315:2	0/1:53,33:32:87:0.384:2	./.	./.	./.	0/1:43,23:32:66:0.348:2	./.	./.
chr3	12875443	rs12629133	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:30:41:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,2:31:2:1.00:2	0/1:19,18:31:37:0.486:2	0/1:0,35:29:36:1.00:2	0/1:15,20:29:35:0.571:2	0/1:28,10:30:38:0.263:2	./.	0/1:10,17:30:27:0.630:2	0/1:17,19:32:36:0.528:2	0/1:0,44:30:44:1.00:2
chr3	12877657	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:32:40:0.100:2	./.	./.	./.
chr3	12962074	rs35319679	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:32:7:1.00:2	0/1:65,42:32:107:0.393:2	./.	0/1:38,23:32:61:0.377:2	./.	0/1:48,36:32:84:0.429:2	./.	./.	./.
chr3	12977060	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:31:94:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	12977631	rs151018442	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,10:31:36:0.278:2	./.	./.	./.
chr3	12983083	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:32:131:0.031:2	./.	./.
chr3	12983284	rs200380325	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,29:32:55:0.527:2	./.
chr3	13361287	rs354478	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,81:31:81:1.00:2	0/1:55,34:31:89:0.382:2	0/1:65,41:30:106:0.387:2	0/1:74,37:31:111:0.333:2	0/1:1,100:31:101:0.990:2	0/1:2,83:31:85:0.976:2	0/1:0,82:32:82:1.00:2	./.
chr3	13361391	rs354479	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,55:31:55:1.00:2	0/1:22,20:30:42:0.476:2	0/1:1,56:30:57:0.982:2	0/1:23,22:31:45:0.489:2	0/1:1,61:31:62:0.984:2	0/1:0,57:31:57:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,54:31:54:1.00:2
chr3	13364876	rs514084	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,46:31:47:0.979:2	0/1:20,16:32:36:0.444:2	0/1:27,26:31:53:0.491:2	0/1:39,34:31:73:0.466:2	0/1:0,56:31:56:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,41:32:41:1.00:2	./.
chr3	13367406	rs665064	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,53:31:53:1.00:2	./.	0/1:31,38:31:69:0.551:2	0/1:38,26:32:64:0.406:2	0/1:2,55:32:57:0.965:2	0/1:1,59:33:60:0.983:2	0/1:0,25:32:25:1.00:2	./.
chr3	13368892	rs2271509	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,73:31:73:1.00:2	0/1:2,35:31:37:0.946:2	0/1:0,12:31:12:1.00:2	./.	0/1:67,65:30:132:0.492:2	0/1:62,61:31:123:0.496:2	0/1:70,73:32:143:0.510:2	./.	./.	./.	0/1:1,106:32:107:0.991:2
chr3	13379400	rs3773302	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,30:31:30:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,5:33:5:1.00:2	./.	0/1:0,40:31:40:1.00:2	0/1:19,11:30:30:0.367:2	0/1:35,26:31:61:0.426:2	./.	./.	0/1:39,3:33:42:0.071:2	0/1:0,16:32:16:1.00:2
chr3	13383540	rs2271504	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:33:54:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,25:33:25:1.00:2	0/1:51,41:33:92:0.446:2	0/1:0,60:32:60:1.00:2	0/1:50,39:33:89:0.438:2	0/1:43,45:33:88:0.511:2	0/1:91,6:32:97:0.062:2	0/1:53,50:33:103:0.485:2	./.	0/1:0,98:33:98:1.00:2
chr3	13395475	rs2280085	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,102:32:190:0.537:2	./.	./.	./.	./.	0/1:1,140:32:141:0.993:2
chr3	13395579	rs2280084	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,88:32:89:0.989:2	0/1:3,83:32:86:0.965:2	0/1:0,17:31:17:1.00:2	0/1:50,75:32:125:0.600:2	0/1:0,167:31:167:1.00:2	0/1:68,73:32:141:0.518:2	0/1:53,76:31:129:0.589:2	0/1:142,11:32:153:0.072:2	0/1:54,73:32:127:0.575:2	./.	0/1:0,106:32:106:1.00:2
chr3	13399786	rs6795271	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,95:31:95:1.00:2	0/1:1,49:31:50:0.980:2	0/1:0,12:31:12:1.00:2	./.	0/1:67,87:31:154:0.565:2	./.	0/1:42,47:30:89:0.528:2	./.	./.	./.	./.
chr3	13407556	rs3732671	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:27:58:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,3:30:3:1.00:2	0/1:34,29:29:63:0.460:2	0/1:0,72:28:72:1.00:2	0/1:37,35:29:72:0.486:2	0/1:38,39:28:77:0.506:2	./.	0/1:58,34:29:92:0.370:2	./.	0/1:0,49:27:49:1.00:2
chr3	13413494	rs74681769	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,42:33:95:0.442:2	0/1:33,23:32:56:0.411:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	13418992	rs150173648	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,54:29:105:0.514:2	./.	./.	./.	./.	./.	./.	./.
chr3	13421150	rs7628051	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,92:30:92:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,22:30:22:1.00:2	./.	0/1:0,78:30:78:1.00:2	0/1:52,52:30:104:0.500:2	0/1:49,42:30:91:0.462:2	0/1:110,5:31:115:0.043:2	./.	./.	0/1:0,107:29:107:1.00:2
chr3	13545697	rs17038240	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,63:32:120:0.525:2	./.	./.	./.	./.	./.
chr3	13612020	rs3732667	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,7:32:19:0.368:2
chr3	13612107	rs17038305	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,22:33:31:0.710:2
chr3	13612786	rs111389908	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,29:31:47:0.617:2	0/1:15,9:31:24:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	13612936	rs3732666	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,21:32:41:0.512:2	./.	./.	./.	./.	0/1:10,13:33:23:0.565:2	./.	0/1:11,9:33:20:0.450:2
chr3	13613015	rs3796318	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,16:31:41:0.390:2
chr3	13613064	rs7623097	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,21:33:66:0.318:2
chr3	13613079	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:32:87:0.046:2	./.	./.	./.
chr3	13670481	rs2242023	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,120:30:120:1.00:2	0/1:0,69:30:69:1.00:2	0/1:11,11:30:22:0.500:2	./.	0/1:1,133:30:134:0.993:2	0/1:0,158:30:158:1.00:2	0/1:113,40:29:153:0.261:2	0/1:108,68:30:176:0.386:2	0/1:0,154:31:154:1.00:2	./.	0/1:65,49:29:114:0.430:2
chr3	13670508	rs41283996	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,94:29:125:0.752:2	0/1:56,98:30:154:0.636:2	./.	0/1:65,52:30:117:0.444:2	./.
chr3	13670536	rs9843344	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,60:31:60:1.00:2	0/1:0,36:31:36:1.00:2	0/1:7,5:30:12:0.417:2	./.	0/1:0,54:31:54:1.00:2	0/1:1,79:31:80:0.988:2	0/1:74,17:32:92:0.187:2	0/1:71,33:32:104:0.317:2	0/1:0,65:32:65:1.00:2	./.	0/1:22,17:32:39:0.436:2
chr3	13670776	rs4684968	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,61:29:61:1.00:2	0/1:0,37:29:37:1.00:2	0/1:9,3:26:12:0.250:2	./.	0/1:0,78:28:78:1.00:2	0/1:71,44:29:115:0.383:2	0/1:43,38:29:81:0.469:2	0/1:56,31:27:87:0.356:2	0/1:3,61:29:64:0.953:2	./.	0/1:34,21:28:55:0.382:2
chr3	13672296	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:32:161:0.025:2	./.	./.	./.
chr3	13679203	rs1061375	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:114,80:32:194:0.412:2	0/1:90,55:32:145:0.379:2	./.	0/1:78,108:32:187:0.581:2	./.	./.	0/1:1,120:33:121:0.992:2
chr3	13679328	rs373511143	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,5:31:72:0.069:2	./.
chr3	13679335	rs1061376	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,65:31:136:0.478:2	0/1:50,42:31:92:0.457:2	./.	0/1:63,59:31:122:0.484:2	./.	./.	0/1:0,90:31:90:1.00:2
chr3	13896140	rs3762719	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,24:29:62:0.387:2	./.	./.	0/1:26,16:28:42:0.381:2	./.
chr3	13896284	rs12639607	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,20:31:32:0.625:2	./.	./.	0/1:11,15:32:26:0.577:2	./.
chr3	14174427	rs4685076	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:34,44:31:78:0.564:2	0/1:26,14:30:40:0.350:2	./.	./.	0/1:31,34:30:65:0.523:2	./.	0/1:39,54:30:93:0.581:2	./.	0/1:47,55:31:102:0.539:2	0/1:46,30:30:76:0.395:2	0/1:45,27:30:72:0.375:2
chr3	14175262	rs2340917	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:50,41:29:91:0.451:2	0/1:31,21:29:52:0.404:2	./.	./.	0/1:44,52:29:96:0.542:2	./.	0/1:51,45:30:96:0.469:2	./.	0/1:66,53:30:119:0.445:2	0/1:60,45:30:105:0.429:2	0/1:51,58:29:109:0.532:2
chr3	14180731	rs113449357	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,52:31:109:0.477:2	./.	./.	./.	./.
chr3	14187449	rs2228001	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,20:31:49:0.408:2	0/1:17,15:31:32:0.469:2	./.	0/1:27,22:31:49:0.449:2	0/1:0,28:32:28:1.00:2	./.	0/1:1,46:31:47:0.979:2	./.	0/1:19,29:32:48:0.604:2	0/1:0,34:31:34:1.00:2	0/1:0,47:31:47:1.00:2
chr3	14193889	rs2227998	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:39,26:32:65:0.400:2	0/1:17,8:32:25:0.320:2	./.	./.	0/1:51,38:32:89:0.427:2	./.	./.	./.	0/1:40,38:34:78:0.487:2	0/1:45,30:32:75:0.400:2	0/1:51,24:32:75:0.320:2
chr3	14197987	rs2958057	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,143:32:144:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,128:32:128:1.00:2	0/1:0,135:31:135:1.00:2	0/1:0,167:31:167:1.00:2	0/1:0,125:32:125:1.00:2	0/1:0,144:32:144:1.00:2	0/1:0,142:33:142:1.00:2	0/1:0,148:32:148:1.00:2	0/1:0,153:32:153:1.00:2
chr3	14214524	rs2229089	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,28:32:76:0.368:2	./.	./.	./.	./.
chr3	14547182	rs61731938	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,16:30:38:0.421:2	./.	0/1:26,11:33:37:0.297:2	./.	./.
chr3	14547198	rs61731939	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:9,13:30:22:0.591:2	0/1:9,4:31:13:0.308:2	./.	./.	./.	./.	0/1:13,12:30:25:0.480:2	./.	./.	./.	./.
chr3	14551444	rs9845816	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,14:32:23:0.609:2	0/1:20,9:32:29:0.310:2	0/1:2,3:33:5:0.600:2	0/1:15,20:32:35:0.571:2	0/1:20,20:33:40:0.500:2	0/1:20,24:32:44:0.545:2	0/1:0,47:32:47:1.00:2	0/1:11,17:33:28:0.607:2	0/1:20,11:34:31:0.355:2	0/1:16,13:33:29:0.448:2	./.
chr3	14552994	rs4685168	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,41:32:66:0.621:2	0/1:19,20:31:39:0.513:2	0/1:1,6:32:7:0.857:2	0/1:42,30:33:73:0.417:2	0/1:1,71:31:72:0.986:2	0/1:0,89:31:89:1.00:2	0/1:1,99:33:100:0.990:2	0/1:46,54:32:100:0.540:2	0/1:39,45:33:84:0.536:2	0/1:0,81:32:82:1.00:2	0/1:45,37:32:82:0.451:2
chr3	14555216	rs4685171	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,16:30:37:0.432:2	0/1:13,12:31:25:0.480:2	0/1:3,3:29:6:0.500:2	0/1:51,45:30:96:0.469:2	0/1:67,30:30:97:0.309:2	0/1:37,57:30:94:0.606:2	0/1:1,73:31:75:0.986:2	0/1:59,60:30:119:0.504:2	0/1:41,37:31:78:0.474:2	0/1:41,26:30:67:0.388:2	./.
chr3	14555811	rs4613440	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,8:30:26:0.308:2	0/1:13,6:31:19:0.316:2	./.	0/1:27,18:31:45:0.400:2	0/1:40,20:32:60:0.333:2	0/1:48,25:32:74:0.342:2	0/1:1,31:32:32:0.969:2	0/1:38,35:31:73:0.479:2	0/1:22,25:32:47:0.532:2	0/1:13,18:33:31:0.581:2	./.
chr3	14563237	rs7645232	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:23,36:30:59:0.610:2	0/1:20,23:31:43:0.535:2	./.	./.	./.	./.	0/1:15,35:30:50:0.700:2	./.	./.	./.	./.
chr3	14563258	rs4234526	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,12:30:33:0.364:2	0/1:1,23:29:24:0.958:2	0/1:29,16:30:45:0.356:2	./.	0/1:17,7:31:24:0.292:2	./.	0/1:21,10:29:31:0.323:2	./.
chr3	14581885	rs200230523	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,54:31:85:0.635:2	./.	./.
chr3	14703156	rs187313760	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,17:32:41:0.415:2	./.	./.	./.	./.
chr3	14712473	rs1901	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:43,42:31:85:0.494:2	0/1:21,42:31:63:0.667:2	0/1:0,7:32:7:1.00:2	./.	0/1:2,57:31:59:0.966:2	./.	./.	./.	./.	0/1:48,44:32:92:0.478:2	0/1:0,98:31:98:1.00:2
chr3	14724345	rs17040154	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,16:31:37:0.432:2	./.	./.	./.	./.	./.	./.
chr3	14724413	rs9821143	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:41,22:32:63:0.349:2	0/1:11,18:32:29:0.621:2	0/1:1,6:30:7:0.857:2	./.	0/1:0,63:31:63:1.00:2	./.	./.	./.	./.	0/1:44,16:31:60:0.267:2	0/1:0,53:32:53:1.00:2
chr3	14745857	rs17040196	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:31:11:1.00:2	./.	0/1:0,49:31:49:1.00:2	0/1:34,31:30:65:0.477:2	0/1:32,30:32:62:0.484:2	0/1:49,38:32:87:0.437:2	0/1:0,65:32:65:1.00:2	0/1:22,36:31:58:0.621:2	0/1:1,65:31:66:0.985:2
chr3	14755572	rs6765537	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:29:4:1.00:2	./.	0/1:0,56:27:57:1.00:2	0/1:56,45:28:101:0.446:2	0/1:51,59:28:110:0.536:2	0/1:88,56:28:144:0.389:2	0/1:1,74:29:75:0.987:2	0/1:57,39:29:96:0.406:2	0/1:0,81:28:81:1.00:2
chr3	14755617	rs6790129	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	0/1:0,41:30:41:1.00:2	0/1:39,30:30:69:0.435:2	0/1:31,47:30:78:0.603:2	0/1:62,41:30:103:0.398:2	0/1:3,45:31:48:0.938:2	0/1:30,34:31:64:0.531:2	0/1:0,59:30:59:1.00:2
chr3	14770001	rs35363400	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,20:32:52:0.385:2	./.	./.	./.	./.	./.	./.
chr3	14860735	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:30:80:0.050:2	./.	./.	./.	./.
chr3	14861847	rs201245272	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,3:34:57:0.053:2	./.	./.
chr3	14862121	rs61751584	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,29:28:59:0.492:2	./.	./.	./.	./.	./.	./.	./.
chr3	14862376	rs144177006	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,20:31:37:0.541:2	./.
chr3	14939167	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:33:73:0.055:2	./.	./.	./.	./.
chr3	14939471	rs67571220	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,51:31:96:0.531:2	./.	./.	./.	./.	./.	0/1:24,26:31:50:0.520:2
chr3	14939479	rs2164356	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:32:39:1.00:2	0/1:0,44:32:44:1.00:2	0/1:4,6:31:10:0.600:2	0/1:1,69:31:70:0.986:2	0/1:55,46:30:101:0.455:2	0/1:42,39:31:81:0.481:2	0/1:45,55:32:100:0.550:2	0/1:52,61:31:113:0.540:2	0/1:0,76:32:76:1.00:2	0/1:32,28:31:60:0.467:2	0/1:29,26:31:55:0.473:2
chr3	15080696	rs2230444	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,39:32:100:0.390:2	0/1:37,33:32:70:0.471:2	0/1:68,38:32:106:0.358:2	./.	./.	./.	./.
chr3	15115603	rs201337565	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,4:30:133:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr3	15272045	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:31:164:0.024:2	./.
chr3	15276541	rs17539942	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,25:33:60:0.417:2	./.	./.	./.	./.	./.	./.	0/1:40,33:34:73:0.452:2
chr3	15276562	rs35189473	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,45:32:93:0.484:2	./.	./.	./.	./.	./.
chr3	15282076	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,14:29:35:0.400:2	./.	./.	./.	./.	./.
chr3	15298549	rs138210635	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,45:32:95:0.474:2
chr3	15311325	rs1287467	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:29:10:1.00:2	0/1:0,100:30:101:1.00:2	0/1:56,47:31:103:0.456:2	0/1:0,87:30:87:1.00:2	0/1:0,72:30:72:1.00:2	0/1:1,85:30:86:0.988:2	0/1:0,59:31:59:1.00:2	0/1:43,30:30:73:0.411:2	0/1:1,69:28:70:0.986:2
chr3	15373858	rs115738660	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,11:28:13:0.846:2
chr3	15469383	rs41284029	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,36:31:112:0.321:2	./.	./.	./.	./.	./.
chr3	15476011	rs1563415	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:20,17:31:37:0.459:2	0/1:8,9:30:17:0.529:2	./.	./.	0/1:18,13:31:31:0.419:2	./.	./.	./.	0/1:31,19:31:50:0.380:2	./.	0/1:20,24:30:44:0.545:2
chr3	15478047	rs144767041	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,79:32:137:0.577:2	./.	./.	./.	./.	./.	./.	./.
chr3	15495386	rs55866379	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:32:12:0.250:2	./.	./.	./.	./.	./.	./.	0/1:26,35:32:61:0.574:2	./.
chr3	15516481	rs924812	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:13,12:32:25:0.480:2	0/1:5,15:32:20:0.750:2	./.	0/1:28,13:33:41:0.317:2	./.	0/1:31,20:32:51:0.392:2	0/1:0,25:33:25:1.00:2	0/1:20,12:32:32:0.375:2	0/1:18,22:33:40:0.550:2	0/1:18,13:31:31:0.419:2	./.
chr3	15520838	rs750387	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:31:13:0.308:2	./.	./.	./.	./.	./.	./.	0/1:29,23:33:52:0.442:2	./.
chr3	15610070	rs905650	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,13:31:38:0.342:2	0/1:14,16:30:30:0.533:2	./.	0/1:23,26:30:49:0.531:2	./.	./.
chr3	15616531	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:33:162:0.025:2	./.
chr3	15628040	rs74637339	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,22:32:48:0.458:2	./.	./.	./.	./.	./.	./.
chr3	15643335	rs201756597	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:190:0.021:2	./.	./.	./.	./.
chr3	15686776	rs3817641	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,36:29:88:0.409:2	./.	./.	./.	./.	./.	./.	./.
chr3	15727823	rs7630642	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,48:32:93:0.516:2	./.	./.	./.	./.	./.	./.	0/1:67,50:32:117:0.427:2
chr3	15737689	rs2470548	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,37:32:37:1.00:2	0/1:0,23:32:23:1.00:2	./.	0/1:49,23:31:72:0.319:2	./.	0/1:30,19:31:49:0.388:2	0/1:41,32:31:73:0.438:2	0/1:1,48:32:49:0.980:2	0/1:37,30:33:67:0.448:2	0/1:34,25:32:59:0.424:2	0/1:43,34:32:77:0.442:2
chr3	15737698	rs2470549	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:33:42:1.00:2	0/1:0,25:32:25:1.00:2	0/1:9,3:33:12:0.250:2	0/1:46,23:33:69:0.333:2	./.	0/1:32,20:32:52:0.385:2	0/1:39,32:31:71:0.451:2	0/1:2,42:32:44:0.955:2	0/1:36,31:33:67:0.463:2	0/1:33,26:33:59:0.441:2	0/1:40,32:33:72:0.444:2
chr3	15753641	rs2455834	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,44:29:44:1.00:2	0/1:0,24:27:24:1.00:2	./.	0/1:10,26:29:36:0.722:2	./.	0/1:14,13:30:27:0.481:2	0/1:15,26:29:41:0.634:2	0/1:1,42:28:43:0.977:2	0/1:39,22:30:61:0.361:2	0/1:23,26:29:49:0.531:2	0/1:37,17:28:54:0.315:2
chr3	15776909	rs202016048	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,7:32:10:0.700:2	./.
chr3	15807793	rs138689821	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,16:32:50:0.320:2	./.	./.	./.	./.
chr3	16217131	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:30:64:0.063:2	./.	./.	./.	./.
chr3	16242193	rs143956414	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,75:31:151:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr3	16254172	rs17851238	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,42:28:99:0.424:2	./.	./.	./.	./.	./.	0/1:50,38:32:89:0.432:2
chr3	16261420	rs2271077	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,40:33:78:0.513:2	./.	./.
chr3	16268944	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:33:100:0.040:2
chr3	16268974	rs15767	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,18:31:38:0.474:2	0/1:19,18:32:37:0.486:2	./.	0/1:30,35:31:65:0.538:2	0/1:39,33:31:72:0.458:2	0/1:0,52:31:52:1.00:2	0/1:22,18:32:40:0.450:2	0/1:30,34:31:64:0.531:2	./.	0/1:30,26:31:56:0.464:2	0/1:31,50:31:81:0.617:2
chr3	16268986	rs14576	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:19,17:31:36:0.472:2	0/1:18,17:32:35:0.486:2	./.	0/1:27,36:30:63:0.571:2	./.	0/1:0,50:30:50:1.00:2	0/1:20,19:31:39:0.487:2	0/1:30,37:30:67:0.552:2	./.	0/1:24,29:31:53:0.547:2	0/1:28,47:31:75:0.627:2
chr3	16305674	rs14080	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:45,49:33:94:0.521:2	0/1:25,17:33:42:0.405:2	0/1:9,9:32:18:0.500:2	./.	./.	0/1:70,38:32:108:0.352:2	0/1:3,66:33:69:0.957:2	0/1:56,37:33:93:0.398:2	0/1:0,101:33:102:1.00:2	0/1:57,36:32:93:0.387:2	0/1:67,33:33:100:0.330:2
chr3	16312564	rs842259	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:44,47:32:91:0.516:2	0/1:16,23:32:39:0.590:2	0/1:10,3:31:13:0.231:2	./.	./.	0/1:57,59:31:116:0.509:2	0/1:5,96:32:101:0.950:2	0/1:56,44:31:100:0.440:2	0/1:1,129:32:130:0.992:2	0/1:69,57:32:126:0.452:2	0/1:77,52:31:129:0.403:2
chr3	16327855	rs842274	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:91,59:32:150:0.393:2	0/1:51,32:32:83:0.386:2	0/1:6,13:32:19:0.684:2	./.	./.	0/1:91,102:32:193:0.528:2	0/1:3,188:32:191:0.984:2	0/1:106,85:31:192:0.445:2	0/1:2,189:33:191:0.990:2	0/1:76,80:32:156:0.513:2	0/1:96,90:31:187:0.484:2
chr3	16327909	rs6777976	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:74,116:33:190:0.611:2	0/1:49,56:32:105:0.533:2	0/1:14,13:33:27:0.481:2	./.	./.	./.	./.	./.	./.	0/1:73,74:33:147:0.503:2	0/1:97,97:33:194:0.500:2
chr3	16358584	rs690241	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,33:31:74:0.446:2	0/1:18,6:29:24:0.250:2	0/1:9,7:32:16:0.438:2	0/1:1,67:30:68:0.985:2	0/1:0,61:29:61:1.00:2	0/1:47,36:30:83:0.434:2	./.	0/1:41,54:29:95:0.568:2	./.	0/1:45,27:30:72:0.375:2	0/1:48,37:30:85:0.435:2
chr3	16364919	rs690216	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,26:30:57:0.456:2	0/1:30,20:29:50:0.400:2	./.	0/1:1,78:29:79:0.987:2	0/1:0,61:29:61:1.00:2	0/1:51,42:29:93:0.452:2	./.	0/1:58,41:29:99:0.414:2	./.	0/1:45,25:29:70:0.357:2	0/1:59,47:29:106:0.443:2
chr3	16364954	rs11554130	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:20,18:29:38:0.474:2	0/1:23,15:31:38:0.395:2	./.	./.	./.	./.	./.	./.	./.	0/1:43,13:28:56:0.232:2	0/1:44,40:29:84:0.476:2
chr3	16450898	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:33:182:0.022:2	./.	./.
chr3	16633630	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:162,5:31:167:0.030:2	0/1:180,5:32:185:0.027:2	./.	./.	./.	./.	0/1:180,4:32:184:0.022:2
chr3	16636857	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:32:152:0.026:2	./.	./.
chr3	16640075	rs11710967	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:26:5:1.00:2	./.	0/1:0,5:33:5:1.00:2
chr3	16646745	rs9847342	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,63:30:110:0.573:2	0/1:33,30:30:63:0.476:2	0/1:1,12:30:13:0.923:2	0/1:0,116:31:116:1.00:2	0/1:0,99:29:99:1.00:2	0/1:1,118:29:119:0.992:2	0/1:72,49:29:121:0.405:2	0/1:0,104:30:104:1.00:2	0/1:1,74:30:75:0.987:2	0/1:64,42:31:106:0.396:2	0/1:0,71:31:71:1.00:2
chr3	17051328	rs7653834	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,39:33:96:0.406:2	./.	0/1:59,36:32:95:0.379:2	0/1:33,45:32:79:0.577:2	./.	0/1:46,48:34:94:0.511:2	0/1:39,33:33:72:0.458:2	./.
chr3	17052268	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,4:32:96:0.042:2	./.	./.	./.	./.	./.	./.	./.
chr3	17052702	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:32:77:0.052:2	./.	./.	./.	./.	./.
chr3	17053499	rs4602367	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:38,36:30:74:0.486:2	0/1:28,18:31:46:0.391:2	./.	0/1:32,28:32:60:0.467:2	0/1:35,25:31:60:0.417:2	0/1:49,21:33:70:0.300:2	0/1:35,43:32:78:0.551:2	./.	0/1:0,78:32:78:1.00:2	0/1:57,29:31:86:0.337:2	./.
chr3	17053613	rs61751588	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,12:32:35:0.343:2	0/1:10,7:33:17:0.412:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	17208267	rs1138454	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:34,41:31:75:0.547:2	0/1:32,19:30:51:0.373:2	0/1:4,7:31:11:0.636:2	./.	0/1:45,32:28:77:0.416:2	./.	./.	./.	0/1:0,98:30:98:1.00:2	./.	0/1:67,45:30:112:0.402:2
chr3	17275173	rs2060628	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,17:33:26:0.654:2	0/1:3,168:33:171:0.982:2	./.	0/1:87,88:32:175:0.503:2	./.	./.	0/1:113,84:34:197:0.426:2	0/1:0,121:33:121:1.00:2	0/1:1,181:32:183:0.995:2
chr3	17446447	rs34457748	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,33:32:89:0.375:2
chr3	18427924	rs2229261	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,48:30:88:0.545:2	0/1:29,38:31:67:0.567:2	0/1:9,3:30:12:0.250:2	0/1:0,128:30:128:1.00:2	0/1:61,52:30:113:0.460:2	0/1:69,49:29:118:0.415:2	./.	./.	0/1:2,92:31:94:0.979:2	0/1:3,97:30:100:0.970:2	0/1:62,40:31:102:0.392:2
chr3	19190241	rs34370450	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:41,32:31:73:0.438:2	0/1:25,21:32:46:0.457:2	./.	./.	0/1:30,24:31:54:0.444:2	./.	0/1:30,24:33:54:0.444:2	./.	./.	./.	./.
chr3	19556822	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,3:33:17:0.176:2	./.
chr3	19574945	rs33915638	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,45:29:109:0.413:2	0/1:63,37:29:100:0.370:2	./.	./.	./.	0/1:70,69:29:140:0.496:2
chr3	19575232	rs34561654	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,24:30:72:0.333:2	./.	./.	./.	./.	./.	./.
chr3	19575562	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:33:88:0.045:2	./.	./.	./.	./.
chr3	19924058	rs76398910	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,8:32:28:0.286:2	./.	0/1:20,18:33:38:0.474:2	./.	./.
chr3	19930003	rs4858714	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,6:31:16:0.375:2	./.	0/1:19,7:31:26:0.269:2	./.	0/1:38,11:33:49:0.224:2	0/1:28,13:32:41:0.317:2	0/1:47,34:32:81:0.420:2
chr3	19930130	rs76305623	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,33:32:89:0.371:2	./.	0/1:66,49:33:116:0.426:2	./.	./.
chr3	19947126	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:33:71:0.056:2	./.
chr3	19959756	rs2929366	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,84:31:87:0.966:2	0/1:1,46:30:47:0.979:2	./.	./.	0/1:0,72:30:72:1.00:2	0/1:59,66:30:125:0.528:2	0/1:0,114:31:114:1.00:2	./.	0/1:0,145:31:145:1.00:2	0/1:62,34:31:96:0.354:2	0/1:0,144:31:144:1.00:2
chr3	19961330	rs2931403	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,85:31:85:1.00:2	0/1:0,44:32:44:1.00:2	./.	./.	0/1:0,67:31:67:1.00:2	0/1:61,46:31:107:0.430:2	0/1:1,62:31:63:0.984:2	0/1:57,24:31:81:0.296:2	0/1:1,99:32:100:0.990:2	0/1:0,77:32:77:1.00:2	0/1:0,128:32:128:1.00:2
chr3	19961331	rs2929362	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:39,46:31:85:0.541:2	0/1:26,21:31:47:0.447:2	./.	./.	./.	./.	0/1:44,27:30:71:0.380:2	./.	0/1:52,50:31:102:0.490:2	./.	./.
chr3	19962044	rs13078867	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:20,11:32:31:0.355:2	0/1:14,14:33:28:0.500:2	./.	./.	0/1:17,5:26:22:0.227:2	./.	./.	./.	./.	./.	0/1:21,34:32:55:0.618:2
chr3	19975139	rs17180771	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,61:31:122:0.504:2	./.	0/1:103,77:31:180:0.428:2	./.	0/1:102,97:32:199:0.487:2	0/1:71,76:32:147:0.517:2	0/1:92,101:31:193:0.523:2
chr3	19975215	rs17795400	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:101,86:30:188:0.460:2	0/1:85,76:30:161:0.472:2	./.	./.	0/1:94,67:29:161:0.416:2	./.	./.	./.	./.	./.	0/1:95,87:31:182:0.478:2
chr3	19992432	rs6773437	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,34:33:34:1.00:2	0/1:0,15:32:15:1.00:2	./.	0/1:0,26:32:26:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,19:33:19:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,22:34:22:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,38:33:38:1.00:2
chr3	19992477	rs148447810	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,3:34:31:0.097:2	./.	./.	./.	./.	./.	./.	./.
chr3	19992521	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,3:33:33:0.091:2	./.	./.	./.	./.	./.	./.	./.
chr3	20113830	rs3021408	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,25:32:56:0.446:2	0/1:11,16:33:27:0.593:2	0/1:0,3:31:3:1.00:2	0/1:28,18:33:46:0.391:2	0/1:23,16:31:39:0.410:2	0/1:32,27:32:59:0.458:2	./.	0/1:0,41:32:41:1.00:2	0/1:38,18:33:56:0.321:2	0/1:28,22:32:50:0.440:2	0/1:45,38:31:83:0.458:2
chr3	20141356	rs35424474	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,4:33:15:0.267:2	./.	0/1:19,4:30:23:0.174:2	./.	0/1:3,10:31:13:0.769:2	./.	./.	0/1:18,11:32:29:0.379:2
chr3	20142851	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:32:122:0.033:2	./.	./.	./.	./.	./.
chr3	20212621	rs75326306	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,48:32:107:0.449:2	./.	./.	./.	./.	./.
chr3	20216454	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:33:114:0.035:2	./.	./.	./.	./.
chr3	20216519	rs61729306	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:63,46:32:109:0.422:2	0/1:33,26:32:59:0.441:2	./.	./.	0/1:49,30:32:79:0.380:2	./.	./.	./.	0/1:58,36:33:95:0.383:2	./.	./.
chr3	21462754	rs451242	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:28:19:1.00:2	0/1:0,16:27:16:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,48:29:48:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,54:28:54:1.00:2	0/1:31,20:28:51:0.392:2	0/1:0,30:29:30:1.00:2	0/1:0,27:29:27:1.00:2	0/1:19,33:28:52:0.635:2
chr3	21462787	rs427233	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,15:32:27:0.556:2	0/1:11,11:32:22:0.500:2	0/1:0,4:30:4:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,75:32:75:1.00:2	0/1:36,22:32:58:0.379:2	0/1:0,40:33:40:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,52:32:52:1.00:2
chr3	21462880	rs4455340	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,12:32:25:0.480:2	0/1:0,19:31:19:1.00:2	./.	0/1:14,11:29:25:0.440:2	0/1:20,5:32:25:0.200:2	0/1:7,13:32:20:0.650:2	0/1:10,16:32:26:0.615:2	./.
chr3	21706469	rs114302168	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,47:31:101:0.465:2	./.	./.	./.	./.	./.
chr3	23250218	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,4:33:192:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr3	23929073	rs115996277	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:29:14:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	23959425	rs35629664	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,19:32:42:0.452:2	./.	./.	./.	./.
chr3	23997547	rs61732086	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,93:33:196:0.474:2	./.
chr3	24006477	rs4858097	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,70:31:70:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,89:32:89:1.00:2
chr3	24164510	rs13081063	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,65:33:144:0.451:2	./.	./.
chr3	24184995	rs3752874	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:74,66:32:140:0.471:2	0/1:48,23:31:71:0.324:2	./.	0/1:98,74:31:172:0.430:2	./.	0/1:76,48:31:124:0.387:2	./.	./.	0/1:81,71:32:152:0.467:2	0/1:52,57:31:109:0.523:2	./.
chr3	25611354	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,3:34:62:0.048:2	./.	./.	./.	./.
chr3	25639828	rs61739570	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:32:9:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	25675362	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:29:72:0.056:2	./.	./.	./.	./.	./.
chr3	25679738	rs60422476	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:61,49:33:110:0.445:2	0/1:43,22:32:65:0.338:2	./.	./.	0/1:49,27:32:76:0.355:2	0/1:65,64:31:129:0.496:2	./.	./.	./.	0/1:55,37:32:92:0.402:2	0/1:82,62:32:144:0.431:2
chr3	25761570	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:34:132:0.030:2	./.	./.
chr3	25777564	rs202119444	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:73,6:25:79:0.076:2	./.	./.	0/1:116,8:19:124:0.065:2	./.	0/1:97,14:18:111:0.126:2	./.	0/1:103,12:20:115:0.104:2	0/1:114,10:22:124:0.081:2	0/1:91,14:18:105:0.133:2	0/1:97,9:23:106:0.085:2
chr3	25805649	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:34:169:0.024:2	./.	./.	./.	./.
chr3	25833051	rs139719761	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,36:32:115:0.313:2
chr3	26751260	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,10:32:141:0.071:2
chr3	26751493	rs35497952	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,29:31:66:0.439:2	./.	./.	./.	./.	0/1:32,31:31:63:0.492:2	./.	./.
chr3	26752005	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,22:33:44:0.500:2	./.
chr3	26752097	rs188194787	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,12:31:28:0.429:2	./.	./.	./.	./.	./.	./.
chr3	27204052	rs17854381	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:31:10:0.333:2	./.	./.	./.	0/1:41,48:31:89:0.539:2	0/1:71,38:30:109:0.349:2	0/1:44,59:31:103:0.573:2	0/1:0,61:31:61:1.00:2	./.
chr3	27233566	rs35493524	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,89:31:193:0.461:2	0/1:78,76:31:154:0.494:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	27243045	rs17680166	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,9:32:20:0.450:2	./.	./.	./.	0/1:56,57:33:113:0.504:2	0/1:86,60:33:146:0.411:2	0/1:91,67:33:158:0.424:2	0/1:3,121:32:125:0.976:2	./.
chr3	27244045	rs9823271	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:22,14:33:36:0.389:2	0/1:8,11:33:19:0.579:2	./.	./.	./.	./.	0/1:22,33:33:55:0.600:2	./.	./.	./.	./.
chr3	27257351	rs187971651	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:26:10:0.333:2	./.
chr3	27297816	rs3213930	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:30:55:1.00:2	0/1:2,21:30:23:0.913:2	0/1:0,9:30:9:1.00:2	0/1:0,45:30:45:1.00:2	0/1:27,16:29:43:0.372:2	./.	0/1:1,49:29:50:0.980:2	0/1:28,28:29:56:0.500:2	0/1:0,84:30:84:1.00:2	0/1:0,75:29:75:1.00:2	0/1:40,41:30:81:0.506:2
chr3	27326097	rs11129280	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	./.	./.	0/1:16,12:32:28:0.429:2	0/1:31,21:32:52:0.404:2	0/1:32,28:34:60:0.467:2	0/1:0,32:32:32:1.00:2	./.
chr3	27326451	rs10510594	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,9:30:19:0.474:2	0/1:11,3:30:14:0.214:2	./.	0/1:0,11:30:11:1.00:2	./.
chr3	27332177	rs674303	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,67:33:68:0.985:2	0/1:0,33:32:33:1.00:2	0/1:6,5:32:11:0.455:2	0/1:0,71:32:71:1.00:2	0/1:34,25:32:59:0.424:2	./.	0/1:17,19:32:36:0.528:2	./.	0/1:51,39:33:90:0.433:2	./.	0/1:51,40:33:91:0.440:2
chr3	27332820	rs10510592	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,12:30:26:0.462:2	./.	./.	./.	0/1:49,35:30:84:0.417:2	0/1:67,68:30:135:0.504:2	0/1:88,72:31:160:0.450:2	0/1:0,132:31:132:1.00:2	./.
chr3	27387641	rs55958314	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,35:33:65:0.538:2	./.	./.
chr3	27424718	rs1472256	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:30:60:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,88:30:88:1.00:2	0/1:0,73:29:73:1.00:2	0/1:0,93:29:93:1.00:2	0/1:0,52:29:52:1.00:2	0/1:0,94:29:94:1.00:2	0/1:0,71:30:71:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,93:29:93:1.00:2
chr3	27442336	rs3736312	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,30:32:71:0.423:2	0/1:27,14:31:41:0.341:2	0/1:11,4:30:15:0.267:2	0/1:57,31:30:88:0.352:2	0/1:32,23:31:55:0.418:2	0/1:35,30:31:66:0.462:2	./.	./.	./.	./.	0/1:59,40:32:100:0.404:2
chr3	27463229	rs79251239	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,21:32:51:0.412:2	./.	./.	0/1:37,31:32:68:0.456:2	./.	./.	0/1:48,27:32:75:0.360:2
chr3	27472936	rs3755652	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,116:32:117:0.991:2	0/1:0,74:32:74:1.00:2	0/1:7,7:31:14:0.500:2	0/1:57,60:31:117:0.513:2	0/1:55,38:31:93:0.409:2	0/1:80,70:31:150:0.467:2	./.	./.	./.	./.	0/1:81,72:30:153:0.471:2
chr3	27473066	rs13077400	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:31:50:1.00:2	0/1:0,32:30:32:1.00:2	0/1:5,10:32:15:0.667:2	0/1:36,34:31:70:0.486:2	0/1:19,24:29:43:0.558:2	0/1:25,29:30:54:0.537:2	./.	./.	./.	./.	0/1:44,34:31:78:0.436:2
chr3	27475540	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:31:86:0.047:2	./.	./.	./.
chr3	27478899	rs2029618	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,22:29:48:0.458:2	0/1:29,20:29:49:0.408:2	0/1:2,46:30:48:0.958:2	0/1:30,29:30:59:0.492:2	./.
chr3	27478968	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	27490194	rs13096477	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,80:32:161:0.497:2	0/1:44,45:32:89:0.506:2	0/1:12,9:34:21:0.429:2	0/1:121,66:33:187:0.353:2	0/1:50,34:33:84:0.405:2	0/1:81,82:32:163:0.503:2	./.	./.	./.	./.	0/1:96,77:32:173:0.445:2
chr3	27763350	rs200215171	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,8:33:13:0.615:2	./.	./.	./.	./.	./.	./.	./.
chr3	28283294	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2
chr3	28304845	rs368316365	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,5:32:195:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr3	28304854	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,4:33:196:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr3	28365590	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:34:143:0.028:2	./.	./.
chr3	28365733	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:32:180:0.022:2
chr3	28520373	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,7:33:120:0.058:2	./.
chr3	28520417	rs1563656	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:48,58:33:106:0.547:2	0/1:38,45:32:83:0.542:2	0/1:9,9:31:18:0.500:2	./.	0/1:42,25:31:67:0.373:2	./.	0/1:0,74:32:74:1.00:2	./.	0/1:0,123:33:123:1.00:2	./.	0/1:0,160:32:160:1.00:2
chr3	28533658	rs13100556	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:82,44:32:126:0.349:2	0/1:44,24:32:68:0.353:2	./.	./.	./.	./.	0/1:53,43:32:96:0.448:2	./.	0/1:1,109:32:110:0.991:2	./.	./.
chr3	29530008	rs3773022	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,21:32:32:0.656:2	0/1:18,5:32:23:0.217:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	29804487	rs1371839	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,38:32:61:0.623:2	0/1:15,16:31:31:0.516:2	0/1:0,4:29:4:1.00:2	0/1:33,28:30:61:0.459:2	0/1:0,39:30:39:1.00:2	0/1:22,20:28:42:0.476:2	0/1:19,16:31:35:0.457:2	0/1:17,27:30:44:0.614:2	0/1:41,35:32:76:0.461:2	0/1:19,17:31:36:0.472:2	./.
chr3	30029724	rs1868491	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,23:31:47:0.489:2	./.	./.	./.	./.	0/1:23,13:33:36:0.361:2	./.	./.
chr3	30032626	rs114278295	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,69:30:158:0.437:2	./.
chr3	30713795	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.	./.
chr3	30819751	rs143542109	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:30:11:0.636:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	30827904	rs6550024	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,50:31:88:0.568:2	./.	./.	./.	./.	./.
chr3	31659458	rs199778452	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:111,30:15:142:0.213:2	0/1:78,15:12:94:0.161:2	./.	0/1:124,46:11:170:0.271:2	0/1:103,25:13:128:0.195:2	0/1:114,56:13:171:0.329:2	0/1:96,28:15:124:0.226:2	0/1:125,41:12:167:0.247:2	0/1:139,29:12:168:0.173:2	0/1:96,15:17:111:0.135:2	0/1:109,38:16:147:0.259:2
chr3	31659462	rs74346226	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:77,12:13:89:0.135:2	./.	0/1:156,14:14:171:0.082:2	./.	0/1:159,25:14:185:0.136:2	./.	./.	./.	0/1:113,18:11:131:0.137:2	./.
chr3	31665283	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:34:194:0.021:2	./.
chr3	31710165	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:195,4:32:199:0.020:2	./.	./.	./.	./.	./.	./.
chr3	31712393	rs3749405	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,67:32:69:0.971:2	0/1:0,54:32:54:1.00:2	./.	./.	0/1:62,49:30:111:0.441:2	0/1:81,61:31:142:0.430:2	0/1:65,71:31:136:0.522:2	./.	./.	./.	./.
chr3	31725316	rs2278959	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,76:32:77:0.987:2	0/1:0,57:32:57:1.00:2	./.	0/1:68,44:31:112:0.393:2	0/1:54,42:32:96:0.438:2	0/1:66,41:31:107:0.383:2	0/1:70,48:31:118:0.407:2	./.	./.	./.	0/1:65,33:32:98:0.337:2
chr3	31789442	rs141263490	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,47:29:98:0.480:2	./.	./.	./.
chr3	31789582	rs2290532	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,41:31:41:1.00:2	0/1:0,23:32:23:1.00:2	./.	./.	0/1:37,39:31:76:0.513:2	./.	0/1:49,42:30:91:0.462:2	./.	0/1:30,30:33:60:0.500:2	0/1:28,26:31:54:0.481:2	./.
chr3	32030859	rs186046779	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,26:30:80:0.325:2	./.	./.	./.	./.	./.	./.	./.
chr3	32030998	rs4639011	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,84:32:166:0.506:2	./.	./.
chr3	32031024	rs4449357	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,6:32:108:0.056:2	./.	0/1:71,71:31:142:0.500:2	./.	0/1:66,84:31:150:0.560:2
chr3	32031053	rs140232911	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,5:33:140:0.036:2	./.	./.
chr3	32031135	rs6419811	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,57:31:138:0.416:2	./.	0/1:71,64:31:135:0.474:2
chr3	32031246	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:33:70:0.057:2	./.	./.	./.
chr3	32031315	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:32:159:0.025:2	./.	./.	./.
chr3	32031615	rs13064905	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,46:31:165:0.279:2	./.	0/1:116,39:32:155:0.252:2
chr3	32031622	rs13087612	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,46:33:169:0.272:2	./.	0/1:120,40:33:160:0.250:2
chr3	32031643	rs13065048	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,52:29:172:0.302:2	./.	0/1:117,47:28:165:0.287:2
chr3	32031765	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,4:32:61:0.066:2	./.	./.	./.	./.	./.	./.	./.
chr3	32031784	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,4:33:65:0.062:2	./.	./.	./.	./.	./.	./.	./.
chr3	32031792	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,4:31:64:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr3	32031962	rs1808125	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,6:29:80:0.075:2	0/1:36,4:30:40:0.100:2	0/1:36,53:28:89:0.596:2	./.	./.	0/1:35,43:30:78:0.551:2	0/1:42,43:29:85:0.506:2	0/1:33,23:30:56:0.411:2
chr3	32032001	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,3:32:48:0.063:2	./.	./.	./.	./.
chr3	32032029	rs4458400	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,4:32:59:0.068:2	./.	./.	./.	./.	./.	0/1:80,4:32:84:0.048:2	./.	./.	0/1:64,4:32:68:0.059:2
chr3	32032113	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.	./.	0/1:54,4:31:58:0.069:2	./.	./.
chr3	32032397	rs4955216	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,40:33:95:0.421:2	./.	0/1:74,56:33:130:0.431:2
chr3	32032717	rs150561647	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,44:30:90:0.489:2	0/1:35,35:32:70:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	32032743	rs13094125	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:145,4:34:149:0.027:2	./.	./.	./.	./.	0/1:75,72:34:147:0.490:2	./.	0/1:85,49:32:134:0.366:2
chr3	32180203	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:31:71:0.056:2	./.	./.
chr3	32200460	rs185158781	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,30:31:72:0.417:2	./.	./.	./.	./.
chr3	32200537	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,3:36:103:0.029:2	./.	./.	./.
chr3	32578522	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:33:186:0.022:2
chr3	32586521	rs138677120	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,30:32:85:0.353:2	./.	./.
chr3	32769189	rs11558687	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	32927509	rs6774703	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:31:42:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,98:32:98:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,109:32:109:1.00:2	0/1:0,127:32:127:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,108:33:108:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,84:32:84:1.00:2
chr3	32933036	rs13096271	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,22:31:52:0.431:2	./.	./.	0/1:21,29:33:50:0.580:2	./.	./.
chr3	32995928	rs2228428	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:1,50:32:51:0.980:2	0/1:0,27:32:27:1.00:2	./.	./.	./.	./.	0/1:37,32:31:69:0.464:2	0/1:41,29:31:70:0.414:2	./.	0/1:0,53:31:53:1.00:2	0/1:1,76:31:77:0.987:2
chr3	32996509	rs6770096	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,14:31:41:0.341:2	./.	./.
chr3	33055688	rs73826339	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:71,59:28:130:0.454:2	0/1:32,30:30:62:0.484:2	./.	0/1:78,86:28:164:0.524:2	./.	./.	./.	0/1:101,53:27:154:0.344:2	./.	./.	./.
chr3	33055721	rs4302331	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:29:102:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,108:31:108:1.00:2	0/1:0,128:30:128:1.00:2	0/1:0,116:30:116:1.00:2	0/1:0,120:30:120:1.00:2	0/1:0,125:29:125:1.00:2	0/1:0,113:31:113:1.00:2	0/1:0,75:30:75:1.00:2	0/1:0,93:30:93:1.00:2
chr3	33094973	rs79518579	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,48:31:118:0.407:2	./.	./.	./.	./.	./.
chr3	33099717	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,6:33:114:0.053:2	./.	./.
chr3	33110383	rs35289681	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,33:32:64:0.516:2	./.
chr3	33138544	rs7614776	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:33:42:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,93:33:93:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,73:33:73:1.00:2	0/1:1,75:34:76:0.987:2	0/1:0,62:33:62:1.00:2	0/1:0,64:33:64:1.00:2
chr3	33138549	rs7637099	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,39:32:39:1.00:2	0/1:0,43:32:43:1.00:2	./.	0/1:0,92:32:92:1.00:2	./.	./.	0/1:25,28:32:53:0.528:2	0/1:0,74:31:74:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,62:32:62:1.00:2	0/1:32,27:31:59:0.458:2
chr3	33161898	rs4076086	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,17:32:25:0.680:2	./.	./.	0/1:27,34:31:61:0.557:2	0/1:34,29:31:63:0.460:2	./.	./.	./.	./.
chr3	33165919	rs146124454	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,49:30:104:0.471:2	./.	./.	./.	./.	./.
chr3	33174156	rs1135127	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:60,26:30:86:0.302:2	0/1:34,31:30:65:0.477:2	./.	0/1:65,40:30:105:0.381:2	./.	./.	./.	0/1:90,45:30:135:0.333:2	0/1:0,96:30:96:1.00:2	0/1:51,34:29:85:0.400:2	0/1:69,43:30:112:0.384:2
chr3	33174168	rs1135128	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:56,21:33:77:0.273:2	0/1:30,29:33:59:0.492:2	./.	0/1:58,39:33:97:0.402:2	./.	./.	./.	0/1:85,40:32:125:0.320:2	0/1:0,95:34:95:1.00:2	0/1:43,32:32:75:0.427:2	0/1:66,39:33:105:0.371:2
chr3	33194518	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.
chr3	33194990	rs6810039	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,80:32:162:0.494:2	0/1:60,39:32:99:0.394:2	0/1:16,5:31:21:0.238:2	0/1:99,97:32:196:0.495:2	./.	0/1:102,91:31:193:0.472:2	0/1:5,186:32:191:0.974:2	0/1:95,96:32:191:0.503:2	./.	./.	./.
chr3	33195284	rs61743511	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,10:32:36:0.278:2	0/1:9,6:32:15:0.400:2	./.	./.	./.	0/1:20,27:30:47:0.574:2	0/1:18,6:31:24:0.250:2	0/1:21,14:31:35:0.400:2	./.	./.	./.
chr3	33195309	rs61743461	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,20:31:39:0.513:2	0/1:8,6:29:14:0.429:2	./.	./.	./.	0/1:18,17:30:35:0.486:2	0/1:15,8:31:23:0.348:2	0/1:18,15:28:33:0.455:2	./.	./.	./.
chr3	33249370	rs61744674	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,57:29:154:0.370:2	./.
chr3	33255592	rs9637517	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:32:103:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,12:32:12:1.00:2	0/1:53,60:32:114:0.531:2	0/1:44,30:32:74:0.405:2	0/1:55,32:31:87:0.368:2	0/1:0,117:32:117:1.00:2	0/1:0,117:32:117:1.00:2	0/1:0,127:34:127:1.00:2	0/1:0,83:33:83:1.00:2	0/1:0,121:32:121:1.00:2
chr3	33318997	rs201905493	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,9:27:25:0.360:2	./.	./.	./.
chr3	33319023	rs374563543	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:31:7:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	33426992	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:174,4:31:178:0.022:2	./.	./.	./.	./.	./.	./.
chr3	33431826	rs41285089	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,71:31:162:0.438:2	./.	./.	./.	./.	./.
chr3	33434128	rs62252101	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:2,32:31:34:0.941:2	0/1:0,14:31:14:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:15,11:32:26:0.423:2	./.
chr3	33434831	rs2293250	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,18:33:41:0.439:2	0/1:0,55:32:55:1.00:2	0/1:18,38:33:56:0.679:2	0/1:30,18:32:48:0.375:2	./.	0/1:16,10:34:26:0.385:2	0/1:44,27:33:71:0.380:2
chr3	33454280	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:181,9:26:190:0.047:2	./.	./.	./.	./.	./.	./.
chr3	33454282	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:180,9:25:189:0.048:2	./.	./.	./.	./.	./.	./.
chr3	33458266	rs3736563	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,25:32:42:0.595:2	./.	./.	0/1:1,193:32:194:0.995:2	0/1:103,62:33:165:0.376:2	0/1:118,79:32:197:0.401:2	./.	0/1:97,89:32:186:0.478:2	./.
chr3	33543195	rs111990025	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,25:33:43:0.581:2	./.	./.	./.	./.
chr3	33543196	rs200365117	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,4:32:64:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr3	33552155	rs61735757	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,74:31:179:0.413:2	./.	./.	./.	./.	./.
chr3	33725859	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:32:107:0.037:2	./.	./.	./.
chr3	33728610	rs61738888	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,46:33:106:0.434:2	./.	./.	0/1:44,24:33:68:0.353:2	./.	0/1:72,33:33:105:0.314:2	./.	./.
chr3	33877626	rs3792594	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,10:31:29:0.345:2	0/1:59,74:30:133:0.556:2	0/1:60,55:30:115:0.478:2	./.	0/1:1,134:30:135:0.993:2	0/1:0,159:31:159:1.00:2	./.	./.	0/1:84,80:32:164:0.488:2
chr3	33879770	rs3203777	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:3,114:32:117:0.974:2	0/1:1,53:32:54:0.981:2	./.	0/1:49,57:31:106:0.538:2	./.	./.	./.	./.	0/1:77,62:32:139:0.446:2	0/1:0,94:32:94:1.00:2	./.
chr3	33887008	rs112754416	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,80:30:185:0.432:2	./.	0/1:103,79:31:182:0.434:2	./.	./.	./.	./.
chr3	33893987	rs9813017	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,45:32:130:0.346:2	./.	./.	0/1:61,37:32:98:0.378:2	0/1:61,42:32:103:0.408:2	./.	./.	./.
chr3	33894186	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,4:32:98:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr3	33895391	rs3183982	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,8:27:10:0.800:2	0/1:43,47:28:90:0.522:2	0/1:34,26:27:60:0.433:2	./.	0/1:3,49:28:52:0.942:2	0/1:0,67:28:67:1.00:2	./.	./.	0/1:64,78:29:142:0.549:2
chr3	33905566	rs1127732	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,9:29:22:0.409:2	./.	0/1:101,85:30:186:0.457:2	./.	0/1:94,86:30:180:0.478:2	0/1:100,82:30:182:0.451:2	./.	./.	0/1:92,89:30:181:0.492:2
chr3	33907915	rs61751641	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,34:32:80:0.425:2	./.	./.
chr3	33907945	rs3183987	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,5:29:12:0.417:2	0/1:44,29:29:74:0.397:2	0/1:25,23:29:48:0.479:2	./.	0/1:2,42:29:44:0.955:2	0/1:0,108:29:109:1.00:2	./.	./.	0/1:49,42:29:91:0.462:2
chr3	35725250	rs969818	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,69:32:70:0.986:2	0/1:1,61:31:62:0.984:2	0/1:2,7:30:9:0.778:2	./.	0/1:0,72:30:72:1.00:2	0/1:48,38:31:86:0.442:2	0/1:47,44:31:91:0.484:2	0/1:0,123:31:123:1.00:2	0/1:77,62:32:139:0.446:2	0/1:55,31:32:86:0.360:2	0/1:0,105:31:105:1.00:2
chr3	35778773	rs2278757	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,8:29:24:0.333:2	0/1:13,8:30:21:0.381:2	0/1:0,4:31:4:1.00:2	0/1:18,11:31:29:0.379:2	./.	0/1:16,9:32:25:0.360:2	0/1:17,11:32:28:0.393:2	0/1:21,15:30:36:0.417:2	0/1:19,5:31:24:0.208:2	0/1:14,6:30:21:0.300:2	0/1:12,7:32:19:0.368:2
chr3	36422135	rs112766131	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:31:11:0.545:2	./.	./.	./.	0/1:0,5:28:5:1.00:2	./.	./.	./.
chr3	36422216	rs73052248	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,31:32:61:0.508:2	./.	./.	./.	0/1:15,19:31:34:0.559:2	./.	./.	0/1:14,13:30:27:0.481:2
chr3	36779707	rs3796187	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,12:30:16:0.750:2	0/1:38,45:30:83:0.542:2	./.	0/1:41,54:30:95:0.568:2	./.	0/1:3,92:31:95:0.968:2	./.	0/1:37,43:31:80:0.538:2	./.
chr3	36779992	rs55888784	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,34:31:77:0.442:2
chr3	36875116	rs186229206	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,24:31:58:0.414:2	./.	./.	./.	./.	./.	./.	./.
chr3	36875292	rs202062734	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,63:32:153:0.412:2	./.	./.	./.	./.	./.	./.	./.
chr3	36897568	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:176,4:33:180:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr3	36897812	rs11712950	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,13:31:13:1.00:2	./.	0/1:19,4:32:23:0.174:2	0/1:15,10:32:25:0.400:2	./.	0/1:10,8:33:18:0.444:2	0/1:12,5:32:17:0.294:2	0/1:0,31:32:31:1.00:2
chr3	36898036	rs62245253	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,73:32:170:0.429:2	./.	./.	./.
chr3	36898973	rs17201603	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,23:33:54:0.426:2	./.	./.	./.	./.
chr3	36898991	rs61732326	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,35:30:63:0.556:2	./.	./.	./.	0/1:44,28:30:72:0.389:2
chr3	37033462	rs4647200	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,15:31:34:0.441:2	./.	./.	./.
chr3	37034356	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:27:11:0.364:2	./.
chr3	37034446	rs34566456	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,12:31:24:0.500:2
chr3	37053568	rs1799977	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,26:29:51:0.510:2	0/1:32,24:30:56:0.429:2	./.	0/1:37,45:30:82:0.549:2	0/1:46,33:31:79:0.418:2	0/1:67,34:29:101:0.337:2	0/1:54,50:30:104:0.481:2	0/1:55,53:30:108:0.491:2	0/1:65,54:32:119:0.454:2	0/1:43,36:30:79:0.456:2	./.
chr3	37083740	rs9876116	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,79:30:80:0.988:2	0/1:0,33:30:33:1.00:2	./.	0/1:64,51:29:115:0.443:2	0/1:0,46:30:46:1.00:2	0/1:63,37:30:100:0.370:2	0/1:58,34:30:92:0.370:2	0/1:72,32:29:105:0.308:2	0/1:64,45:31:109:0.413:2	0/1:61,31:30:92:0.337:2	./.
chr3	37089130	rs35001569	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,46:32:120:0.383:2	./.	./.	./.	./.	./.
chr3	37089131	rs63749986	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,46:28:121:0.380:2	./.	./.	./.	./.	./.
chr3	37092019	rs35831931	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,25:31:57:0.439:2	0/1:21,13:32:34:0.382:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	37163039	rs336595	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:32:85:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,68:31:68:1.00:2
chr3	37366459	rs11718848	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,129:33:130:0.992:2	0/1:2,71:32:73:0.973:2	./.	./.	0/1:3,89:31:92:0.967:2	./.	0/1:112,55:32:167:0.329:2	0/1:110,79:32:189:0.418:2	0/1:117,78:33:195:0.400:2	./.	./.
chr3	37367890	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:123,4:33:127:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr3	37368755	rs62241896	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,51:31:51:1.00:2	0/1:0,26:33:26:1.00:2	./.	./.	0/1:1,47:32:48:0.979:2	./.	0/1:15,20:33:35:0.571:2	0/1:22,23:32:45:0.511:2	0/1:43,22:33:65:0.338:2	./.	./.
chr3	37379234	rs140703855	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,64:33:135:0.474:2	0/1:29,36:32:65:0.554:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	37459181	rs115735701	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,13:33:30:0.433:2	./.	./.	./.	./.	./.	./.	./.
chr3	37459523	rs193051820	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,8:32:19:0.421:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	37523079	rs17227748	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,78:31:155:0.503:2	./.	0/1:87,78:31:165:0.473:2	./.	0/1:62,62:31:124:0.500:2	./.	./.
chr3	37535984	rs2507940	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:56,45:32:103:0.446:2	0/1:25,26:32:51:0.510:2	./.	./.	0/1:52,42:32:94:0.447:2	0/1:62,49:32:111:0.441:2	0/1:37,45:32:82:0.549:2	0/1:0,108:32:108:1.00:2	0/1:60,48:32:108:0.444:2	0/1:41,53:33:96:0.564:2	0/1:0,119:33:119:1.00:2
chr3	37536056	rs2507941	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,88:33:191:0.461:2
chr3	37560842	rs61751646	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,78:31:186:0.419:2	./.	./.
chr3	37574951	rs267561	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:27,16:32:43:0.372:2	0/1:12,16:32:28:0.571:2	./.	./.	0/1:53,41:31:94:0.436:2	0/1:44,24:31:68:0.353:2	0/1:59,41:31:100:0.410:2	0/1:0,56:30:56:1.00:2	0/1:46,38:32:84:0.452:2	0/1:41,12:30:53:0.226:2	0/1:0,50:32:50:1.00:2
chr3	37695192	rs3821909	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,54:30:121:0.446:2	./.	./.	./.	./.	0/1:98,49:30:147:0.333:2	./.	0/1:73,41:31:115:0.360:2
chr3	37695260	rs57547208	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,50:29:91:0.549:2	0/1:23,24:30:47:0.511:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	37778481	rs1118148	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,39:28:39:1.00:2	0/1:4,22:28:26:0.846:2	./.	0/1:0,39:28:39:1.00:2	./.	./.	./.	./.	0/1:25,17:28:42:0.405:2	./.	0/1:31,18:28:49:0.367:2
chr3	38038982	rs6809649	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:33:9:0.444:2	./.	./.	./.	./.	0/1:72,50:32:122:0.410:2	0/1:36,50:33:86:0.581:2	./.	./.
chr3	38043904	rs9843296	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,26:31:53:0.491:2	0/1:35,22:31:57:0.386:2	./.	./.
chr3	38047680	rs11707277	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:31:12:0.417:2	./.	./.	./.	./.	0/1:35,32:31:67:0.478:2	0/1:38,20:33:58:0.345:2	./.	./.
chr3	38047954	rs9816693	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:31:11:0.364:2	./.	./.	./.	./.	0/1:41,22:32:63:0.349:2	0/1:38,30:33:68:0.441:2	./.	./.
chr3	38051941	rs9857730	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:72,41:30:113:0.363:2	0/1:33,27:29:60:0.450:2	0/1:4,4:32:8:0.500:2	./.	./.	./.	./.	0/1:5,148:30:153:0.967:2	0/1:80,79:31:159:0.497:2	./.	./.
chr3	38052804	rs61755441	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:27,23:31:50:0.460:2	0/1:18,20:31:38:0.526:2	./.	./.	./.	./.	./.	0/1:44,25:30:69:0.362:2	./.	./.	./.
chr3	38058044	rs72863996	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:31:7:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	38058058	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,41:30:97:0.423:2	./.	./.
chr3	38061748	rs61751648	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:31:11:0.273:2	./.	./.	./.	./.	0/1:36,30:33:66:0.455:2	./.	./.	./.
chr3	38080952	rs7625806	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	0/1:23,13:28:36:0.361:2	./.	0/1:17,5:27:22:0.227:2	0/1:12,14:28:26:0.538:2	0/1:2,17:28:19:0.895:2	0/1:19,13:29:32:0.406:2	./.
chr3	38081031	rs7616776	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:31:10:1.00:2	./.	0/1:68,44:32:112:0.393:2	./.	./.	./.	0/1:1,61:33:62:0.984:2	0/1:31,34:33:65:0.523:2	./.
chr3	38087123	rs7630340	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:41,45:29:86:0.523:2	0/1:30,29:28:59:0.492:2	./.	./.	./.	./.	0/1:39,31:29:70:0.443:2	0/1:50,31:28:82:0.383:2	./.	./.	./.
chr3	38125705	rs7652276	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	0/1:54,34:30:88:0.386:2	./.	./.	./.	0/1:0,79:30:79:1.00:2	0/1:39,30:31:69:0.435:2	./.
chr3	38136401	rs34503588	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,34:28:63:0.540:2	0/1:19,14:29:33:0.424:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	38139089	rs17731258	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,63:28:136:0.463:2	./.	./.	./.
chr3	38139120	rs202125600	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:31:11:0.636:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	38151731	rs12630114	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:10,15:33:25:0.600:2	0/1:13,7:31:20:0.350:2	0/1:0,5:33:5:1.00:2	./.	0/1:20,17:32:37:0.459:2	./.	0/1:16,11:28:27:0.407:2	0/1:15,30:31:45:0.667:2	0/1:0,30:32:30:1.00:2	0/1:13,22:31:36:0.629:2	./.
chr3	38157998	rs200307012	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,9:17:51:0.176:2
chr3	38170810	rs156265	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:101,83:32:185:0.451:2	./.	./.	./.	0/1:106,91:33:197:0.462:2	./.	./.
chr3	38170844	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:34:146:0.027:2	./.	./.
chr3	38173098	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:32:65:0.062:2	./.	./.	./.	./.	./.
chr3	38173469	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,4:33:66:0.061:2	./.	./.	./.	./.	./.	./.	./.
chr3	38182253	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:30:124:0.032:2	./.
chr3	38182641	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,6:29:65:0.092:2
chr3	38271881	rs6599079	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:48,27:32:75:0.360:2	0/1:20,15:32:35:0.429:2	./.	./.	./.	./.	0/1:20,20:30:40:0.500:2	0/1:45,27:31:72:0.375:2	./.	./.	./.
chr3	38307510	rs9842091	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:73,95:33:168:0.565:2	0/1:67,67:32:134:0.500:2	0/1:23,17:33:40:0.425:2	./.	./.	./.	0/1:97,95:33:192:0.495:2	./.	./.	./.	./.
chr3	38307615	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,15:12:94:0.161:2	./.	./.
chr3	38348027	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:32:181:0.022:2	./.	./.	./.	./.	./.
chr3	38349171	rs148000898	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,71:33:157:0.452:2	./.	./.	./.	./.	./.	./.	./.
chr3	38350479	rs818819	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,128:30:129:0.992:2	0/1:0,66:30:66:1.00:2	0/1:19,6:30:25:0.240:2	0/1:0,168:30:168:1.00:2	0/1:3,137:30:140:0.979:2	0/1:0,159:30:159:1.00:2	0/1:120,75:31:195:0.385:2	0/1:1,162:30:163:0.994:2	0/1:113,76:31:189:0.402:2	0/1:0,127:30:127:1.00:2	0/1:0,129:29:129:1.00:2
chr3	38350519	rs818818	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,170:32:171:0.994:2	0/1:0,95:31:95:1.00:2	0/1:16,7:32:23:0.304:2	0/1:0,186:31:186:1.00:2	0/1:3,186:31:189:0.984:2	0/1:0,190:30:190:1.00:2	0/1:117,64:32:181:0.354:2	0/1:0,184:31:184:1.00:2	0/1:122,73:31:195:0.374:2	0/1:1,183:31:184:0.995:2	0/1:0,171:31:171:1.00:2
chr3	38350543	rs818817	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,174:29:175:0.994:2	0/1:0,103:29:103:1.00:2	0/1:10,11:30:21:0.524:2	0/1:0,180:30:180:1.00:2	0/1:5,166:29:171:0.971:2	0/1:1,182:29:183:0.995:2	0/1:103,77:29:180:0.428:2	0/1:0,178:29:178:1.00:2	0/1:123,60:30:183:0.328:2	0/1:0,187:29:187:1.00:2	0/1:0,180:29:182:1.00:2
chr3	38355225	rs73064822	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.	./.	./.	./.	0/1:19,21:32:40:0.525:2	0/1:16,9:29:25:0.360:2	./.
chr3	38355293	rs192274726	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,40:33:87:0.460:2	./.	./.
chr3	38357817	rs2070492	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:30:5:0.800:2	./.	./.	./.	./.	./.	0/1:39,21:29:60:0.350:2	./.	./.
chr3	38357961	rs240033	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:55,50:30:105:0.476:2	0/1:32,25:30:57:0.439:2	./.	0/1:50,52:31:102:0.510:2	0/1:54,67:30:121:0.554:2	./.	0/1:60,74:31:134:0.552:2	./.	0/1:56,54:32:110:0.491:2	./.	./.
chr3	38401836	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.	./.	./.
chr3	38401839	rs818850	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,133:31:134:1.00:2	0/1:1,84:30:85:0.988:2	0/1:17,6:31:23:0.261:2	0/1:1,189:31:190:0.995:2	0/1:0,193:30:193:1.00:2	0/1:1,196:30:197:0.995:2	0/1:3,197:30:200:0.985:2	0/1:0,195:30:195:1.00:2	0/1:0,190:31:190:1.00:2	0/1:2,135:31:137:0.985:2	0/1:0,155:30:155:1.00:2
chr3	38404472	rs17118	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:33,16:31:49:0.327:2	0/1:17,16:30:33:0.485:2	./.	./.	./.	./.	0/1:0,35:31:35:1.00:2	0/1:39,29:30:68:0.426:2	./.	0/1:39,24:31:63:0.381:2	./.
chr3	38406773	rs704943	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:33:25:1.00:2	0/1:0,17:31:17:1.00:2	0/1:3,5:32:8:0.625:2	0/1:0,34:31:34:1.00:2	0/1:0,39:31:39:1.00:2	0/1:1,38:31:39:0.974:2	0/1:0,33:31:33:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,43:33:43:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,28:31:28:1.00:2
chr3	38407117	rs2234610	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,17:31:31:0.548:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	38408361	rs843890	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:1,20:33:21:0.952:2	0/1:2,4:32:6:0.667:2	0/1:0,34:31:34:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,22:33:22:1.00:2	0/1:0,36:34:36:1.00:2	0/1:0,19:33:19:1.00:2	0/1:0,55:33:55:1.00:2
chr3	38519424	rs2070489	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:52,45:33:98:0.464:2	0/1:33,26:32:59:0.441:2	0/1:0,26:33:26:1.00:2	./.	./.	0/1:2,122:33:124:0.984:2	0/1:1,113:33:114:0.991:2	0/1:1,88:32:89:0.989:2	0/1:0,111:33:111:1.00:2	0/1:0,116:33:116:1.00:2	0/1:71,39:32:110:0.355:2
chr3	38520727	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,58:34:123:0.472:2	./.	./.
chr3	38524742	rs1046048	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,42:30:90:0.467:2	0/1:37,24:31:61:0.393:2	./.	./.	./.	0/1:0,94:31:94:1.00:2	0/1:1,145:31:146:0.993:2	0/1:82,72:31:154:0.468:2	0/1:50,41:32:91:0.451:2	0/1:0,91:32:91:1.00:2	0/1:44,43:32:87:0.494:2
chr3	38565706	rs137953389	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	38592406	rs1805126	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	0/1:14,15:30:29:0.517:2	./.	./.	0/1:0,49:28:49:1.00:2	0/1:22,14:30:36:0.389:2	./.	./.
chr3	38597188	rs199473266	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,5:31:117:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr3	38601671	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:132,4:34:136:0.029:2	./.	./.	./.	./.	./.	./.
chr3	38601875	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:152,5:28:157:0.032:2	./.	./.	./.	./.	./.	./.
chr3	38622467	rs7430407	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:33:102:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,154:32:154:1.00:2	0/1:0,183:33:183:1.00:2	0/1:0,131:32:131:1.00:2	0/1:0,152:32:152:1.00:2	0/1:0,160:32:160:1.00:2	0/1:0,114:34:114:1.00:2	0/1:0,127:33:127:1.00:2	0/1:0,115:32:115:1.00:2
chr3	38645420	rs1805124	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:53,26:29:79:0.329:2	0/1:31,18:29:49:0.367:2	./.	0/1:5,81:30:86:0.942:2	0/1:57,34:30:91:0.374:2	0/1:61,57:31:118:0.483:2	0/1:68,40:30:108:0.370:2	0/1:3,101:30:104:0.971:2	./.	./.	0/1:42,34:31:76:0.447:2
chr3	38674712	rs6599230	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:29:23:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,35:30:35:1.00:2	0/1:19,12:30:31:0.387:2	0/1:1,44:30:45:0.978:2	0/1:0,31:30:31:1.00:2	0/1:1,46:29:47:0.979:2	0/1:0,39:31:39:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,31:30:31:1.00:2
chr3	38739574	rs6599241	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,99:30:99:1.00:2	0/1:0,69:29:69:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,150:30:150:1.00:2	0/1:0,148:30:148:1.00:2	0/1:0,179:30:179:1.00:2	0/1:0,124:30:124:1.00:2	0/1:0,176:30:176:1.00:2	0/1:0,127:31:127:1.00:2	0/1:0,88:30:88:1.00:2	0/1:0,101:30:101:1.00:2
chr3	38739622	rs77804526	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,41:33:107:0.383:2	./.
chr3	38739845	rs6599242	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,114:33:114:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,149:32:149:1.00:2	0/1:0,162:32:162:1.00:2	0/1:67,73:32:140:0.521:2	0/1:0,151:33:151:1.00:2	0/1:0,132:32:132:1.00:2	0/1:0,122:33:122:1.00:2	0/1:0,78:33:78:1.00:2	0/1:0,97:33:97:1.00:2
chr3	38740001	rs78425180	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,43:30:89:0.483:2	./.
chr3	38748833	rs6790627	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,60:32:114:0.526:2	0/1:30,31:32:61:0.508:2	0/1:9,4:33:13:0.308:2	0/1:69,44:31:113:0.389:2	0/1:71,53:32:124:0.427:2	./.	./.	./.	./.	0/1:44,61:32:105:0.581:2	./.
chr3	38763863	rs6771157	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,75:30:169:0.444:2	0/1:87,83:29:170:0.488:2	0/1:62,44:29:106:0.415:2	./.	./.
chr3	38764998	rs12632942	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,44:33:94:0.468:2	0/1:47,40:33:87:0.460:2	0/1:52,34:33:87:0.395:2	./.	./.
chr3	38766675	rs6795970	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,118:32:119:1.00:2	0/1:63,39:31:102:0.382:2	0/1:89,55:32:144:0.382:2	0/1:57,39:32:96:0.406:2	0/1:0,89:33:90:1.00:2	0/1:41,35:32:76:0.461:2	0/1:45,35:31:80:0.438:2
chr3	38766701	rs6791171	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,45:33:95:0.479:2	./.	./.
chr3	38766722	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:33:107:0.037:2
chr3	38768247	rs59468016	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,41:31:75:0.547:2	0/1:42,31:30:73:0.425:2	0/1:33,44:31:77:0.571:2	./.	./.
chr3	38768300	rs57326399	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,67:30:107:0.626:2	0/1:47,47:29:94:0.500:2	0/1:58,40:30:98:0.408:2	./.	./.
chr3	38768334	rs7374804	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:74,55:31:129:0.426:2	0/1:68,48:32:116:0.414:2	./.	./.	./.	./.	./.
chr3	38770299	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,58:28:116:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr3	38793940	rs7630989	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,32:31:55:0.582:2	./.
chr3	38793989	rs7617919	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,13:29:41:0.317:2	0/1:23,19:31:42:0.452:2	0/1:25,14:32:39:0.359:2	./.	./.
chr3	38798171	rs62244070	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,8:31:14:0.571:2	0/1:7,11:32:18:0.611:2	./.	./.
chr3	38802197	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:33:92:0.043:2	./.
chr3	38802251	rs7641844	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,14:32:38:0.368:2	0/1:16,14:32:30:0.467:2	0/1:19,22:31:41:0.537:2	0/1:17,14:33:31:0.452:2	./.
chr3	38888764	rs62244134	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,26:31:69:0.377:2	./.	./.
chr3	38936134	rs33985936	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:77,62:32:139:0.446:2	0/1:48,41:31:89:0.461:2	./.	./.	0/1:0,160:31:160:1.00:2	./.	./.	./.	0/1:91,98:33:189:0.519:2	0/1:65,77:32:142:0.542:2	./.
chr3	38945560	rs4073113	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:86,53:30:139:0.381:2	0/1:55,29:29:84:0.345:2	0/1:11,6:30:17:0.353:2	0/1:92,65:30:157:0.414:2	./.	0/1:79,76:30:155:0.490:2	0/1:3,128:30:131:0.977:2	0/1:3,119:30:122:0.975:2	0/1:1,127:31:128:0.992:2	0/1:73,48:30:122:0.397:2	0/1:85,83:31:168:0.494:2
chr3	38991598	rs78812474	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,11:32:24:0.458:2	./.	./.	./.	./.	./.
chr3	39108050	rs148407227	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,43:33:99:0.434:2	0/1:25,23:32:48:0.479:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	39111140	rs2293312	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,20:32:51:0.392:2	0/1:29,11:32:40:0.275:2	0/1:4,3:32:7:0.429:2	0/1:21,27:32:48:0.563:2	0/1:0,48:32:48:1.00:2	0/1:27,21:31:48:0.438:2	./.	./.	./.	0/1:42,20:33:62:0.323:2	0/1:38,41:33:79:0.519:2
chr3	39141946	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:30:88:0.045:2	./.	./.	./.	./.	./.
chr3	39144354	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:33:122:0.033:2	./.
chr3	39150614	rs190808723	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,34:31:80:0.425:2	./.	./.	./.	./.	./.	./.
chr3	39152345	rs1112438	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,49:32:99:0.495:2	0/1:28,32:32:60:0.533:2	0/1:9,3:32:12:0.250:2	0/1:92,58:31:150:0.387:2	0/1:1,81:31:82:0.988:2	./.	./.	./.	./.	0/1:70,47:32:117:0.402:2	0/1:57,59:31:116:0.509:2
chr3	39152438	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:28:95:0.042:2
chr3	39161456	rs1274972	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,35:32:84:0.417:2	0/1:37,31:32:68:0.456:2	0/1:6,5:32:11:0.455:2	0/1:72,50:32:122:0.410:2	0/1:2,63:32:65:0.969:2	0/1:78,49:32:127:0.386:2	./.	./.	./.	0/1:34,38:33:72:0.528:2	0/1:76,62:32:138:0.449:2
chr3	39161464	rs1274971	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,32:32:77:0.416:2	0/1:32,28:32:60:0.467:2	0/1:2,3:31:5:0.600:2	0/1:66,49:31:115:0.426:2	0/1:1,52:32:53:0.981:2	0/1:73,42:31:115:0.365:2	./.	./.	./.	0/1:27,35:32:62:0.565:2	0/1:72,56:32:128:0.438:2
chr3	39161508	rs186774683	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,16:31:40:0.400:2	./.	./.	./.	./.
chr3	39170246	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,45:30:79:0.570:2	./.	./.	./.	./.	./.	./.
chr3	39178437	rs35934336	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,51:33:112:0.455:2	./.	./.
chr3	39180099	rs784498	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,57:30:119:0.479:2	0/1:29,38:30:67:0.567:2	0/1:9,4:32:13:0.308:2	0/1:86,94:30:181:0.522:2	./.	0/1:0,144:30:145:1.00:2	0/1:1,121:30:122:0.992:2	0/1:2,172:30:175:0.989:2	0/1:1,152:31:153:0.993:2	0/1:78,54:31:132:0.409:2	0/1:87,57:32:144:0.396:2
chr3	39180100	rs80238762	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,57:32:146:0.390:2
chr3	39180263	rs704959	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,26:32:55:0.473:2	0/1:12,15:31:27:0.556:2	0/1:1,3:26:4:0.750:2	0/1:28,10:33:38:0.263:2	./.	0/1:31,21:31:52:0.404:2	0/1:1,22:32:23:0.957:2	0/1:1,44:32:45:0.978:2	0/1:0,46:33:46:1.00:2	0/1:19,22:32:41:0.537:2	0/1:27,33:33:60:0.550:2
chr3	39184959	rs1274958	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,48:32:119:0.407:2	0/1:47,27:32:74:0.365:2	0/1:14,4:32:18:0.222:2	0/1:88,83:31:171:0.485:2	./.	0/1:0,126:30:126:1.00:2	0/1:0,178:31:178:1.00:2	0/1:1,127:31:128:0.992:2	0/1:0,141:32:141:1.00:2	0/1:70,48:32:118:0.407:2	0/1:82,55:31:137:0.401:2
chr3	39185077	rs1274957	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,39:29:89:0.448:2	0/1:22,30:30:52:0.577:2	0/1:8,6:31:14:0.429:2	0/1:85,64:29:149:0.430:2	./.	0/1:66,62:29:128:0.484:2	0/1:2,166:29:170:0.988:2	0/1:0,111:30:112:1.00:2	0/1:1,113:30:117:0.991:2	0/1:60,32:29:93:0.348:2	0/1:59,48:31:108:0.449:2
chr3	39185248	rs784519	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,101:32:101:1.00:2	0/1:2,55:32:57:0.965:2	0/1:8,4:31:12:0.333:2	0/1:82,54:33:136:0.397:2	0/1:0,187:32:189:1.00:2	0/1:0,147:32:147:1.00:2	0/1:0,172:32:172:1.00:2	0/1:1,168:32:169:0.994:2	0/1:0,145:33:145:1.00:2	0/1:0,107:32:107:1.00:2	0/1:68,62:32:130:0.477:2
chr3	39186728	rs784517	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:31,31:30:62:0.500:2	0/1:13,18:32:31:0.581:2	./.	0/1:30,65:31:95:0.684:2	./.	./.	0/1:56,58:31:114:0.509:2	0/1:4,120:32:124:0.968:2	0/1:1,104:32:105:0.990:2	0/1:43,57:32:100:0.570:2	0/1:33,35:31:68:0.515:2
chr3	39225585	rs146284335	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,60:30:179:0.335:2	./.	./.	./.	./.	./.
chr3	39226114	rs34810344	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,10:30:16:0.625:2	./.	./.	./.	./.	./.	0/1:66,49:31:115:0.426:2	./.	./.
chr3	39226127	rs3732383	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,37:31:80:0.463:2	0/1:34,24:32:58:0.414:2	0/1:9,6:33:15:0.400:2	0/1:41,44:32:85:0.518:2	./.	./.	./.	./.	0/1:52,60:32:112:0.536:2	./.	./.
chr3	39227535	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,20:34:62:0.323:2	./.	./.
chr3	39227664	rs61736155	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:25,18:32:43:0.419:2	0/1:9,14:31:23:0.609:2	./.	0/1:29,22:31:51:0.431:2	./.	./.	./.	./.	./.	./.	./.
chr3	39228043	rs11711871	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:25,14:32:39:0.359:2	0/1:14,10:31:24:0.417:2	./.	0/1:24,14:29:38:0.368:2	./.	./.	./.	./.	./.	./.	./.
chr3	39228676	rs62244166	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,15:31:30:0.500:2	0/1:31,19:29:50:0.380:2	./.	./.	./.
chr3	39228772	rs61736153	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,24:31:59:0.407:2	./.	./.	./.
chr3	39229011	rs74827471	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,21:32:41:0.512:2	./.	./.	./.	./.	./.
chr3	39229900	rs6805248	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:29:60:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,69:30:69:1.00:2	0/1:0,67:30:67:1.00:2	0/1:0,105:30:105:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,100:30:100:1.00:2	0/1:1,72:30:73:0.986:2	0/1:0,61:29:61:1.00:2	0/1:0,67:30:67:1.00:2
chr3	39230439	rs115099187	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,15:33:36:0.417:2	./.	./.
chr3	39230490	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,4:32:80:0.051:2	./.	./.	./.	./.	./.	./.	./.
chr3	39230607	rs146075058	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,51:32:109:0.472:2	./.	./.	./.	./.	./.	./.	./.
chr3	39230997	rs2271487	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:9,5:31:14:0.357:2	0/1:0,3:29:3:1.00:2	0/1:10,14:29:24:0.583:2	./.	./.	./.	./.	0/1:19,12:32:31:0.387:2	./.	./.
chr3	39307162	rs3732378	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:31:7:0.714:2	./.	0/1:38,40:30:78:0.513:2	0/1:44,39:30:85:0.470:2	./.	./.	./.	./.	./.
chr3	39307256	rs3732379	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,12:31:21:0.571:2	./.	0/1:1,97:31:98:0.990:2	0/1:51,55:31:106:0.519:2	./.	./.	./.	./.	0/1:66,73:32:139:0.525:2
chr3	39373902	rs2853699	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:93,86:32:180:0.480:2	0/1:59,45:32:104:0.433:2	0/1:21,7:33:28:0.250:2	0/1:109,86:32:195:0.441:2	0/1:3,149:32:152:0.980:2	0/1:111,85:32:196:0.434:2	./.	0/1:127,63:32:191:0.332:2	./.	0/1:109,78:32:187:0.417:2	0/1:101,91:32:192:0.474:2
chr3	39374931	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:33:149:0.027:2	./.	./.	./.
chr3	39431081	rs2270770	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:30:92:1.00:2	0/1:1,50:30:51:0.980:2	0/1:10,6:28:16:0.375:2	0/1:1,135:30:136:0.993:2	0/1:5,92:30:97:0.948:2	0/1:0,103:29:103:1.00:2	0/1:2,105:30:107:0.981:2	0/1:73,71:30:144:0.493:2	0/1:49,57:31:107:0.538:2	./.	0/1:68,54:31:122:0.443:2
chr3	39433380	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:138,5:30:143:0.035:2	./.	./.	./.	./.	./.	./.
chr3	39433396	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:126,5:30:131:0.038:2	./.	./.	./.	./.	./.	./.
chr3	39453160	rs2269350	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,17:32:43:0.395:2	./.	./.
chr3	40231883	rs1317317	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:30:58:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,58:29:58:1.00:2	0/1:27,23:29:50:0.460:2	0/1:0,57:28:57:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,32:29:32:1.00:2	0/1:0,58:29:58:1.00:2
chr3	40251392	rs1799418	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,52:31:121:0.430:2	0/1:0,85:31:85:1.00:2	./.	0/1:42,42:31:84:0.500:2	0/1:53,58:32:111:0.523:2	0/1:0,87:32:87:1.00:2	./.	0/1:0,88:31:88:1.00:2
chr3	40286017	rs4618168	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,116:30:117:1.00:2	0/1:1,53:28:54:0.981:2	0/1:0,29:29:29:1.00:2	0/1:66,77:30:143:0.538:2	./.	0/1:75,75:29:150:0.500:2	0/1:0,128:29:128:1.00:2	0/1:72,55:28:127:0.433:2	./.	0/1:0,112:29:112:1.00:2	./.
chr3	40351484	rs11709089	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:29:32:1.00:2	0/1:0,15:29:15:1.00:2	0/1:1,5:31:6:0.833:2	0/1:29,15:29:44:0.341:2	./.	0/1:18,16:31:34:0.471:2	0/1:21,11:29:32:0.344:2	0/1:26,10:31:36:0.278:2	./.	0/1:15,21:30:37:0.583:2	./.
chr3	40464372	rs144967530	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,10:32:23:0.435:2	./.	./.	./.	./.	./.
chr3	40468896	rs1047855	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,141:32:141:1.00:2	0/1:2,75:31:77:0.974:2	0/1:13,15:31:28:0.536:2	./.	./.	0/1:103,83:31:186:0.446:2	0/1:102,92:31:195:0.474:2	0/1:104,88:31:192:0.458:2	./.	0/1:79,91:32:171:0.535:2	./.
chr3	40498845	rs2276868	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,138:30:142:0.972:2	0/1:0,188:30:188:1.00:2	0/1:70,78:30:148:0.527:2	0/1:102,88:31:190:0.463:2	0/1:106,76:31:182:0.418:2	0/1:0,137:30:137:1.00:2	0/1:85,53:30:138:0.384:2	0/1:0,140:30:140:1.00:2
chr3	40498933	rs4973904	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:31:51:1.00:2	0/1:0,28:31:28:1.00:2	0/1:4,5:32:9:0.556:2	0/1:2,51:32:53:0.962:2	0/1:1,46:31:47:0.979:2	0/1:0,39:31:39:1.00:2	0/1:1,28:31:29:0.966:2	0/1:0,54:31:54:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,28:31:28:1.00:2
chr3	40502907	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:31:163:0.025:2	./.	./.	./.	./.	./.
chr3	40502918	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:31:172:0.023:2	./.	./.	./.	./.	./.
chr3	40502938	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:32:176:0.023:2
chr3	40503506	rs148931839	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,12:32:25:0.480:2	0/1:9,10:32:19:0.526:2	./.	./.	./.	0/1:8,5:31:13:0.385:2	./.	./.	./.	./.	./.
chr3	40503709	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,6:33:58:0.103:2	./.
chr3	40519429	rs4553952	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:33:64:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,88:33:88:1.00:2	0/1:1,92:32:93:0.989:2	0/1:0,147:32:147:1.00:2	0/1:0,108:33:108:1.00:2	0/1:0,103:33:103:1.00:2	0/1:0,104:34:104:1.00:2	0/1:0,109:33:109:1.00:2	0/1:0,115:32:115:1.00:2
chr3	40528547	rs61733800	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,25:32:63:0.397:2	0/1:18,19:32:37:0.514:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	40529603	rs113564598	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:32:18:0.500:2	./.	./.	./.	0/1:97,68:31:165:0.412:2	./.	./.	./.	./.
chr3	40553953	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:34:162:0.025:2	./.	./.
chr3	40558163	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:33:131:0.031:2	./.
chr3	41278119	rs77750814	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,11:17:51:0.216:2	./.
chr3	41288466	rs6769117	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,53:31:110:0.482:2	0/1:46,39:32:85:0.459:2
chr3	41723280	rs6763446	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:130,4:32:134:0.030:2	./.	./.	./.	./.	./.	./.
chr3	41756965	rs61744388	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:31:9:0.556:2	./.	0/1:33,15:30:48:0.313:2	0/1:1,68:30:69:0.986:2	0/1:40,26:30:66:0.394:2	./.	./.	0/1:30,29:31:59:0.492:2	0/1:30,27:32:57:0.474:2
chr3	41756986	rs61744385	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:32:10:0.600:2	./.	0/1:34,17:30:51:0.333:2	0/1:1,64:31:65:0.985:2	0/1:36,28:31:64:0.438:2	./.	./.	0/1:25,27:31:52:0.519:2	0/1:29,27:32:56:0.482:2
chr3	41831203	rs17215589	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,14:29:38:0.368:2	0/1:0,88:31:88:1.00:2	0/1:47,25:31:73:0.347:2	./.	./.	0/1:32,25:31:57:0.439:2	./.
chr3	41841716	rs4973986	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,169:32:170:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,176:33:176:1.00:2	0/1:0,125:32:125:1.00:2	0/1:0,187:32:187:1.00:2	0/1:0,124:32:125:1.00:2	0/1:0,188:32:188:1.00:2	0/1:1,176:33:177:0.994:2	0/1:0,156:33:156:1.00:2	0/1:2,174:31:176:0.989:2
chr3	41860955	rs17063572	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,12:30:30:0.400:2	./.
chr3	41877414	rs3774372	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,17:33:28:0.607:2	./.	0/1:64,26:31:90:0.289:2	0/1:4,112:32:116:0.966:2	0/1:67,39:33:106:0.368:2	./.	./.	0/1:64,59:33:123:0.480:2	0/1:82,62:34:144:0.431:2
chr3	41925398	rs1052501	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,181:32:183:0.989:2	0/1:0,116:32:116:1.00:2	0/1:32,11:31:43:0.256:2	0/1:2,175:31:177:0.989:2	0/1:122,69:31:191:0.361:2	./.	0/1:109,64:32:173:0.370:2	0/1:2,181:31:183:0.989:2	0/1:2,179:32:181:0.989:2	./.	0/1:109,69:31:178:0.388:2
chr3	41925423	rs1716687	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,167:33:167:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,149:32:149:1.00:2	0/1:0,160:32:160:1.00:2	0/1:0,156:32:156:1.00:2	0/1:2,158:32:160:0.988:2	0/1:2,156:32:158:0.987:2	0/1:1,147:33:148:0.993:2	0/1:95,71:32:166:0.428:2	0/1:0,144:32:144:1.00:2
chr3	41937000	rs1717003	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,36:33:36:1.00:2	0/1:0,19:32:19:1.00:2	./.	0/1:0,44:32:44:1.00:2	0/1:25,19:31:44:0.432:2	./.	0/1:27,18:31:45:0.400:2	0/1:1,41:32:42:0.976:2	0/1:0,48:33:48:1.00:2	./.	0/1:73,34:32:107:0.318:2
chr3	41939929	.	T	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:170,8:32:178:0.045:2	0/1:81,11:28:92:0.120:2	0/1:169,8:31:177:0.045:2	0/1:83,12:31:95:0.126:2	0/1:140,15:32:155:0.097:2	./.	0/1:154,10:32:164:0.061:2	./.
chr3	41939933	.	T	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:170,8:33:178:0.045:2	0/1:82,11:31:93:0.118:2	0/1:170,8:32:178:0.045:2	0/1:82,12:32:94:0.128:2	0/1:141,15:32:156:0.096:2	./.	0/1:155,10:33:165:0.061:2	./.
chr3	41939973	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,5:32:153:0.033:2	0/1:82,8:29:90:0.089:2	0/1:146,6:31:152:0.039:2	0/1:76,7:31:83:0.084:2	0/1:118,11:31:129:0.085:2	./.	0/1:135,10:31:145:0.069:2	./.
chr3	41939993	rs1625226	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,84:30:85:0.988:2	0/1:2,62:31:64:0.969:2	0/1:1,7:29:8:0.875:2	0/1:5,79:30:84:0.940:2	0/1:3,56:30:59:0.949:2	0/1:2,78:30:80:0.975:2	0/1:0,36:29:36:1.00:2	0/1:0,66:31:66:1.00:2	0/1:2,74:31:76:0.974:2	0/1:49,27:31:76:0.355:2	0/1:1,83:31:84:0.988:2
chr3	41942239	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:32:53:0.075:2	./.	./.
chr3	41952838	rs9877875	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,68:32:151:0.453:2
chr3	41952852	rs35263917	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,26:32:57:0.456:2	0/1:0,97:32:98:1.00:2	0/1:29,38:32:67:0.567:2	./.	./.	0/1:54,51:33:105:0.486:2	./.
chr3	41957466	rs1716698	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,31:28:31:1.00:2	0/1:0,15:28:15:1.00:2	./.	0/1:0,40:29:40:1.00:2	0/1:18,13:28:31:0.419:2	./.	0/1:8,9:27:17:0.529:2	0/1:0,28:28:28:1.00:2	0/1:0,41:31:41:1.00:2	./.	0/1:26,15:29:41:0.366:2
chr3	41960006	rs1716975	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,99:32:99:1.00:2	0/1:1,65:32:66:0.985:2	0/1:10,7:32:17:0.412:2	0/1:0,108:32:108:1.00:2	0/1:22,28:31:50:0.560:2	./.	0/1:26,23:32:49:0.469:2	0/1:0,99:32:99:1.00:2	0/1:1,103:33:104:0.990:2	./.	0/1:79,66:32:145:0.455:2
chr3	41996136	rs2272007	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,127:33:128:0.992:2	0/1:1,62:33:63:0.984:2	0/1:4,3:33:7:0.429:2	0/1:2,132:33:134:0.985:2	0/1:50,45:32:95:0.474:2	./.	0/1:58,34:33:92:0.370:2	0/1:0,126:33:126:1.00:2	0/1:0,143:34:143:1.00:2	./.	0/1:82,87:33:169:0.515:2
chr3	42218299	rs56657651	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:33:12:0.500:2	./.	./.	./.	./.	./.	./.	0/1:59,45:33:105:0.433:2	./.
chr3	42236415	rs9851455	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,36:30:60:0.600:2	0/1:22,18:28:40:0.450:2	0/1:0,8:32:8:1.00:2	0/1:51,43:31:94:0.457:2	0/1:0,111:30:111:1.00:2	0/1:0,84:29:84:1.00:2	0/1:1,104:30:105:0.990:2	0/1:1,125:30:126:0.992:2	0/1:70,46:31:117:0.397:2	0/1:0,65:31:65:1.00:2	0/1:0,73:29:73:1.00:2
chr3	42251263	rs2290134	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:17,12:33:29:0.414:2	0/1:14,9:33:23:0.391:2	0/1:0,7:32:7:1.00:2	./.	./.	0/1:1,22:31:23:0.957:2	./.	0/1:19,17:32:36:0.472:2	0/1:19,20:33:39:0.513:2	0/1:0,24:32:24:1.00:2	./.
chr3	42251329	rs2290133	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:31:8:1.00:2	./.	./.	0/1:27,37:31:64:0.578:2	./.	./.	0/1:31,35:33:66:0.530:2	0/1:0,43:32:43:1.00:2	./.
chr3	42264715	rs143591096	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,25:29:49:0.510:2	./.	0/1:37,14:29:51:0.275:2	./.	./.	./.	./.
chr3	42265166	rs12487911	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,76:30:157:0.484:2	0/1:54,38:30:92:0.413:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	42438754	rs13054	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:54,32:30:86:0.372:2	0/1:17,20:30:37:0.541:2	0/1:6,3:31:9:0.333:2	./.	./.	0/1:80,56:30:136:0.412:2	0/1:4,121:31:125:0.968:2	0/1:68,65:30:133:0.489:2	./.	0/1:0,100:30:100:1.00:2	0/1:0,91:30:91:1.00:2
chr3	42448471	rs2286720	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,56:32:117:0.479:2	0/1:56,48:32:104:0.462:2
chr3	42568929	rs2229722	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,33:31:68:0.485:2	./.	./.	./.	0/1:24,28:31:52:0.538:2	./.	./.
chr3	42576579	rs375826611	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,71:32:144:0.493:2	./.	./.
chr3	42599091	rs2271184	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,29:31:70:0.414:2	./.	./.	./.	./.
chr3	42599171	rs146063264	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,49:31:102:0.480:2	./.	./.	./.	./.
chr3	42610374	rs2271186	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:38,30:32:68:0.441:2	0/1:19,8:31:27:0.296:2	./.	0/1:53,44:32:97:0.454:2	0/1:29,25:32:54:0.463:2	./.	0/1:28,18:33:46:0.391:2	./.	0/1:2,84:33:86:0.977:2	0/1:38,33:32:71:0.465:2	0/1:0,75:32:75:1.00:2
chr3	42610515	rs2271187	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,53:32:146:0.363:2	./.	./.	./.	./.
chr3	42660567	rs73085303	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,28:32:53:0.528:2	./.	./.	./.	./.
chr3	42672732	rs201863592	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,54:33:105:0.514:2	./.
chr3	42674289	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:33:148:0.027:2	./.	./.
chr3	42679497	rs35890296	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,36:31:82:0.439:2	0/1:21,25:30:46:0.543:2	./.	0/1:40,42:30:82:0.512:2	0/1:28,22:30:50:0.440:2	./.	./.	./.	0/1:1,69:31:70:0.986:2	0/1:26,22:31:48:0.458:2	0/1:1,85:30:88:0.988:2
chr3	42679777	rs33969824	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,18:32:30:0.600:2	0/1:18,13:31:31:0.419:2	./.	0/1:22,15:32:37:0.405:2	0/1:14,13:32:27:0.481:2	./.	./.	./.	0/1:0,35:33:35:1.00:2	0/1:14,9:33:23:0.391:2	0/1:0,58:32:58:1.00:2
chr3	42679848	rs35506005	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,41:33:87:0.471:2	./.	0/1:41,40:33:81:0.494:2
chr3	42680000	rs35770315	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:25,14:31:39:0.359:2	0/1:11,22:32:33:0.667:2	./.	./.	0/1:14,15:31:29:0.517:2	./.	./.	./.	0/1:31,23:31:54:0.426:2	./.	0/1:34,23:30:57:0.404:2
chr3	42728144	rs6805421	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,47:32:104:0.452:2	0/1:41,24:31:65:0.369:2	0/1:0,20:34:20:1.00:2	0/1:0,138:33:138:1.00:2	0/1:1,173:32:174:0.994:2	0/1:0,161:32:161:1.00:2	./.	0/1:75,89:33:164:0.543:2	0/1:81,73:33:155:0.474:2	0/1:64,55:33:120:0.462:2	0/1:75,67:32:142:0.472:2
chr3	42733468	rs123509	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,114:29:114:1.00:2	0/1:0,70:29:70:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,140:29:140:1.00:2	0/1:0,178:29:178:1.00:2	0/1:0,133:29:133:1.00:2	0/1:107,79:29:186:0.425:2	0/1:103,75:30:178:0.421:2	0/1:95,54:29:149:0.362:2	./.	0/1:0,117:29:117:1.00:2
chr3	42735150	rs11079	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:32:11:1.00:2	0/1:48,27:32:75:0.360:2	0/1:25,32:32:57:0.561:2	0/1:0,51:31:51:1.00:2	0/1:36,27:32:63:0.429:2	0/1:34,34:31:68:0.500:2	./.	./.	./.
chr3	42735274	rs339697	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:29:6:1.00:2	0/1:44,37:30:81:0.457:2	0/1:40,71:29:111:0.640:2	0/1:0,107:30:107:1.00:2	0/1:65,55:29:120:0.458:2	0/1:68,40:31:108:0.370:2	./.	./.	./.
chr3	42738533	rs115328735	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:29:14:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	42772038	rs12495805	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,50:31:51:0.980:2	0/1:2,44:32:46:0.957:2	./.	0/1:44,36:30:80:0.450:2	0/1:38,33:31:71:0.465:2	./.	./.	./.	./.	./.	0/1:50,36:30:86:0.419:2
chr3	42781276	rs62246603	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,63:30:134:0.470:2	./.	0/1:0,121:30:121:1.00:2	./.	./.	./.	./.	./.
chr3	42787469	rs2240859	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,43:33:44:0.977:2	0/1:0,33:32:33:1.00:2	./.	0/1:0,77:33:77:1.00:2	0/1:25,26:32:51:0.510:2	0/1:0,60:33:60:1.00:2	./.	./.	0/1:28,29:33:57:0.509:2	./.	0/1:0,61:32:61:1.00:2
chr3	42788823	rs73829283	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,21:31:45:0.467:2	./.	0/1:13,7:30:20:0.350:2
chr3	42799765	rs17238798	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,71:31:139:0.511:2	./.	0/1:1,136:31:137:0.993:2	./.	./.	./.	./.	./.
chr3	42906116	rs2228467	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,77:30:187:0.412:2	./.	./.	./.	./.	./.	./.	./.
chr3	42907112	rs2228468	A	T,C	.	PASS	AC=1,4;AF=0.067,0.267;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8	GT:BQ:DP:FA:SS	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0/2:29:8:1.00:2	./.	./.	./.	0/2:33:117:0.431:2	0/2:32:102:0.971:2	0/2:34:112:0.321:2	0/1:31:89:0.449:2	./.
chr3	42908135	rs114860534	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,47:28:91:0.516:2	./.	./.	./.	./.	0/1:35,45:29:81:0.563:2	./.
chr3	42908775	rs1366046	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:33:3:1.00:2	./.	0/1:9,6:33:15:0.400:2	./.	0/1:12,6:32:18:0.333:2	0/1:0,17:33:17:1.00:2	0/1:18,15:34:33:0.455:2	./.	./.
chr3	42915878	rs735320	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,52:30:130:0.400:2	./.	./.	./.	0/1:58,38:30:96:0.396:2
chr3	42917004	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,75:33:165:0.455:2	./.	./.	./.	./.
chr3	42917047	rs9865715	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,121:32:121:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,115:33:115:1.00:2	0/1:0,117:32:118:1.00:2	0/1:0,128:32:128:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,135:32:135:1.00:2	0/1:0,135:33:136:1.00:2	0/1:0,119:33:119:1.00:2	0/1:0,119:32:119:1.00:2
chr3	42956273	rs1427801	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:30:92:1.00:2	0/1:0,85:30:85:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,124:31:124:1.00:2	0/1:39,42:30:81:0.519:2	0/1:0,125:29:125:1.00:2	0/1:0,100:30:100:1.00:2	0/1:0,142:29:142:1.00:2	0/1:0,144:31:144:1.00:2	0/1:65,62:30:127:0.488:2	0/1:0,138:30:138:1.00:2
chr3	43073761	rs658958	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:31:5:0.800:2	0/1:59,39:31:98:0.398:2	0/1:0,61:31:61:1.00:2	./.	0/1:40,13:31:53:0.245:2	0/1:0,83:31:83:1.00:2	0/1:31,36:32:67:0.537:2	./.	0/1:33,31:32:64:0.484:2
chr3	43073796	rs149380799	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,15:31:57:0.263:2	./.	./.	./.	./.
chr3	43074430	rs2948619	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,13:33:13:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,82:32:82:1.00:2	0/1:92,46:32:138:0.333:2	0/1:0,79:32:79:1.00:2	0/1:60,49:32:109:0.450:2	./.	0/1:0,60:31:60:1.00:2
chr3	43074434	rs2936817	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,12:31:12:1.00:2	0/1:49,44:30:93:0.473:2	0/1:0,98:30:98:1.00:2	./.	0/1:93,48:31:141:0.340:2	0/1:2,84:31:86:0.977:2	0/1:64,49:31:113:0.434:2	./.	0/1:38,25:31:63:0.397:2
chr3	43074826	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:33:95:0.042:2	./.	./.	./.
chr3	43074871	rs588335	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:29:38:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,55:29:55:1.00:2	0/1:0,90:30:90:1.00:2	0/1:0,56:29:56:1.00:2	0/1:0,56:28:56:1.00:2	0/1:0,92:30:92:1.00:2	0/1:0,58:30:58:1.00:2	0/1:32,21:29:53:0.396:2	0/1:0,47:30:47:1.00:2
chr3	43095101	rs536119	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:29:8:1.00:2	0/1:31,46:29:77:0.597:2	0/1:0,91:29:91:1.00:2	./.	0/1:39,41:29:80:0.513:2	0/1:55,65:29:120:0.542:2	0/1:36,33:30:69:0.478:2	./.	0/1:49,15:28:64:0.234:2
chr3	43097710	rs664628	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:32:9:1.00:2	0/1:52,33:34:85:0.388:2	0/1:0,79:32:79:1.00:2	./.	0/1:59,53:33:112:0.473:2	0/1:54,57:33:111:0.514:2	0/1:50,52:34:102:0.510:2	./.	0/1:41,41:33:82:0.500:2
chr3	43097765	rs3732858	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,40:32:81:0.494:2	./.	0/1:2,94:32:96:0.979:2	./.	./.	./.	./.	0/1:44,40:32:84:0.476:2
chr3	43121559	rs604033	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,46:30:84:0.548:2	0/1:32,28:32:60:0.467:2	0/1:0,20:31:20:1.00:2	0/1:0,138:31:138:1.00:2	0/1:0,119:30:119:1.00:2	0/1:0,103:31:103:1.00:2	0/1:92,74:31:166:0.446:2	0/1:1,131:31:132:0.992:2	0/1:53,53:31:106:0.500:2	./.	0/1:43,49:31:92:0.533:2
chr3	43122966	rs2936818	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,10:32:22:0.455:2	0/1:0,28:31:28:1.00:2	./.	0/1:3,14:30:17:0.824:2	0/1:14,10:31:24:0.417:2	0/1:8,5:31:13:0.385:2	./.	0/1:7,11:32:18:0.611:2
chr3	43344716	rs17075517	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,49:30:98:0.500:2
chr3	43344851	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:143,4:31:147:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr3	43345107	rs17075521	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,16:29:61:0.262:2
chr3	43389767	rs73831264	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,10:14:70:0.143:2	./.	./.	./.	./.	./.
chr3	43591327	rs17409162	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,30:30:91:0.330:2	./.	./.	./.	./.	./.	./.
chr3	43602803	rs3772165	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,86:32:164:0.524:2	0/1:54,54:32:108:0.500:2	0/1:12,6:32:18:0.333:2	0/1:67,69:32:136:0.507:2	0/1:68,57:32:125:0.456:2	0/1:38,71:31:109:0.651:2	./.	0/1:79,65:32:144:0.451:2	0/1:1,151:33:152:0.993:2	0/1:64,62:33:126:0.492:2	./.
chr3	43607136	rs7616708	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:103,89:34:193:0.464:2	0/1:77,84:33:161:0.522:2	0/1:27,27:32:54:0.500:2	0/1:107,88:33:195:0.451:2	0/1:112,80:33:192:0.417:2	0/1:96,98:32:194:0.505:2	./.	0/1:103,91:33:194:0.469:2	0/1:3,193:34:196:0.985:2	0/1:84,112:33:196:0.571:2	./.
chr3	43618280	rs56389778	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,78:30:146:0.534:2	./.	./.	./.	./.	./.	./.
chr3	43618558	rs41289586	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,30:32:69:0.435:2	0/1:30,22:32:52:0.423:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	43641966	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,5:31:189:0.026:2	0/1:183,8:30:193:0.042:2	./.	./.	./.
chr3	43641970	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,7:33:196:0.036:2	0/1:188,5:32:194:0.026:2	0/1:178,8:31:186:0.043:2	0/1:192,5:32:197:0.025:2	./.	0/1:191,5:33:196:0.026:2
chr3	43732466	rs117630969	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:26:5:0.600:2	./.	./.	./.	./.	./.	0/1:2,4:29:6:0.667:2	./.
chr3	43743914	rs148743497	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,63:31:154:0.409:2	./.	./.	./.
chr3	44283672	rs9833423	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:29:23:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,34:28:34:1.00:2	0/1:6,6:30:13:0.500:2	0/1:0,19:26:19:1.00:2	0/1:10,14:29:25:0.583:2	0/1:10,10:27:21:0.500:2	0/1:0,18:32:18:1.00:2	0/1:0,25:28:25:1.00:2	0/1:0,21:28:21:1.00:2
chr3	44283735	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:31:89:0.045:2	./.	./.	./.
chr3	44283808	rs7645375	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:32:77:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,124:32:125:1.00:2	0/1:37,70:31:107:0.654:2	0/1:0,111:31:111:1.00:2	0/1:36,64:32:100:0.640:2	0/1:41,76:32:117:0.650:2	0/1:0,105:33:105:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,88:32:88:1.00:2
chr3	44284584	rs9284879	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	0/1:11,10:32:21:0.476:2	0/1:0,24:30:24:1.00:2	0/1:12,8:32:20:0.400:2	0/1:11,5:31:16:0.313:2	0/1:0,25:32:25:1.00:2	./.	0/1:0,21:32:21:1.00:2
chr3	44284610	rs80124180	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,10:33:20:0.500:2	0/1:14,8:32:22:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	44285248	rs183567766	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,20:30:46:0.435:2
chr3	44286015	rs17646517	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,54:33:129:0.419:2	./.	./.
chr3	44310791	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,26:32:45:0.578:2
chr3	44323447	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:34:117:0.034:2	./.	./.	./.
chr3	44329238	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,4:33:23:0.174:2	./.	./.	./.	./.
chr3	44345542	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:30:77:0.052:2
chr3	44369849	rs146327039	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,6:32:29:0.207:2	./.	./.	./.	./.
chr3	44409138	rs7431164	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,67:32:67:1.00:2	./.	./.	./.	./.	./.	0/1:36,31:32:67:0.463:2	./.
chr3	44488293	rs143141433	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,23:32:53:0.434:2	./.	0/1:27,28:32:55:0.509:2	./.	./.	./.	./.
chr3	44496984	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:32:170:0.024:2	./.	./.	./.
chr3	44607013	rs13081859	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,21:33:61:0.344:2	0/1:15,17:32:32:0.531:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	44611896	rs9835485	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:23,14:33:37:0.378:2	0/1:13,7:32:20:0.350:2	./.	0/1:1,48:32:49:0.980:2	./.	./.	./.	./.	./.	0/1:23,27:32:50:0.540:2	0/1:28,20:33:48:0.417:2
chr3	44612050	rs9873604	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,17:31:37:0.459:2	0/1:12,8:32:20:0.400:2	0/1:0,9:31:9:1.00:2	0/1:0,50:31:50:1.00:2	0/1:1,26:31:27:0.963:2	0/1:0,28:31:28:1.00:2	0/1:9,13:31:22:0.591:2	0/1:26,25:32:51:0.490:2	0/1:0,25:31:25:1.00:2	0/1:16,20:32:36:0.556:2	0/1:0,66:32:66:1.00:2
chr3	44612794	rs201600666	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,13:31:33:0.394:2	./.	./.	./.	./.	./.
chr3	44612839	rs34437520	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,9:31:25:0.360:2	./.	./.	./.	./.	./.
chr3	44670755	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:33:151:0.026:2	./.	./.	./.	./.	./.
chr3	44683475	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,41:33:77:0.532:2
chr3	44683855	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,24:32:39:0.615:2	0/1:11,18:31:29:0.621:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	44692564	rs2272044	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:33:13:0.462:2	./.	0/1:27,23:32:50:0.460:2	./.	./.	./.	./.	./.	./.
chr3	44700552	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:30:51:0.078:2
chr3	44762392	rs6798400	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,30:30:30:1.00:2	./.	./.	./.	./.	./.	0/1:15,16:30:31:0.516:2	./.
chr3	44762830	rs56084453	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,70:29:70:1.00:2	./.	0/1:41,49:30:90:0.544:2	0/1:20,36:31:56:0.643:2	./.	0/1:39,42:30:81:0.519:2
chr3	44762859	rs80107322	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,60:30:61:0.984:2	./.	./.	./.	./.	./.	0/1:26,44:30:70:0.629:2	./.
chr3	44762867	rs61740975	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,63:32:63:1.00:2	./.	./.	./.	./.	./.	0/1:28,43:33:71:0.606:2	./.
chr3	44763037	rs7640654	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:26,22:32:48:0.458:2	0/1:12,14:33:26:0.538:2	0/1:0,7:33:7:1.00:2	./.	0/1:0,23:31:23:1.00:2	0/1:3,34:31:37:0.919:2	0/1:17,23:33:40:0.575:2	0/1:25,33:32:58:0.569:2	0/1:0,62:34:63:1.00:2	./.	0/1:24,23:33:47:0.489:2
chr3	44763287	rs115852283	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,26:30:26:1.00:2	./.	./.	./.	./.	./.	0/1:12,6:32:18:0.333:2	./.
chr3	44763564	rs369566208	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:31:105:0.038:2	./.	./.	./.
chr3	44775962	rs4682752	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,30:29:84:0.357:2	0/1:23,29:29:52:0.558:2	0/1:0,11:28:11:1.00:2	0/1:0,68:29:68:1.00:2	0/1:0,66:29:66:1.00:2	0/1:0,70:29:70:1.00:2	0/1:35,30:29:65:0.462:2	0/1:47,45:29:92:0.489:2	0/1:0,89:30:89:1.00:2	0/1:0,64:30:64:1.00:2	0/1:0,95:29:95:1.00:2
chr3	44776091	rs78023512	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,29:32:55:0.527:2	./.	./.	./.	./.	./.	./.
chr3	44777342	rs115922721	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,6:30:17:0.353:2	./.	./.	./.	./.	./.	./.
chr3	44777795	rs11922470	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,21:31:67:0.313:2	0/1:20,13:32:33:0.394:2	0/1:1,10:31:11:0.909:2	0/1:3,65:32:68:0.956:2	0/1:0,41:31:41:1.00:2	0/1:1,62:32:63:0.984:2	0/1:25,21:32:46:0.457:2	0/1:42,22:32:64:0.344:2	0/1:5,57:33:62:0.919:2	0/1:1,42:32:43:0.977:2	0/1:4,96:33:100:0.960:2
chr3	44777796	rs11926557	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,21:32:67:0.313:2	0/1:20,13:32:33:0.394:2	0/1:1,10:32:11:0.909:2	0/1:3,65:33:68:0.956:2	0/1:0,41:31:41:1.00:2	0/1:1,62:32:63:0.984:2	0/1:23,21:33:44:0.477:2	0/1:42,22:31:64:0.344:2	0/1:4,58:33:62:0.935:2	0/1:1,42:32:43:0.977:2	0/1:4,96:33:100:0.960:2
chr3	44794881	rs112645395	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,8:34:39:0.205:2	./.
chr3	44843007	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:33:77:0.052:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	44854614	rs76971569	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,31:32:31:1.00:2	./.	./.	./.	./.	./.	0/1:16,12:33:28:0.429:2	./.
chr3	44867616	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:32:73:0.055:2	./.
chr3	44869026	rs4682999	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:32:82:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,103:31:103:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,92:31:92:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,135:32:135:1.00:2	0/1:0,103:31:103:1.00:2	0/1:0,121:32:121:1.00:2
chr3	44881909	rs76526953	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,17:33:64:0.266:2	./.
chr3	44884647	rs3804583	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:18,12:32:30:0.400:2	0/1:9,14:31:23:0.609:2	0/1:0,4:32:4:1.00:2	./.	0/1:0,20:31:20:1.00:2	0/1:0,46:31:46:1.00:2	0/1:8,11:33:19:0.579:2	0/1:17,18:32:35:0.514:2	0/1:0,32:33:32:1.00:2	./.	0/1:25,29:33:54:0.537:2
chr3	44906561	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:31:152:0.026:2	./.	./.	./.	./.
chr3	44916211	rs200870959	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,60:32:128:0.472:2
chr3	44929287	rs2271087	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:33,14:29:47:0.298:2	0/1:17,12:29:29:0.414:2	./.	./.	0/1:40,40:28:80:0.500:2	0/1:47,46:27:93:0.495:2	./.	./.	./.	0/1:35,40:30:75:0.533:2	./.
chr3	44935105	rs74776426	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,63:33:152:0.414:2	./.	./.	./.	./.	./.	0/1:61,59:33:120:0.492:2	./.
chr3	44935109	rs34772357	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,65:31:153:0.425:2	./.	./.	./.	./.	./.	0/1:61,65:31:126:0.516:2	./.
chr3	44943069	rs1995640	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,138:31:138:1.00:2	0/1:0,81:32:81:1.00:2	./.	0/1:91,98:31:189:0.519:2	0/1:103,87:31:190:0.458:2	0/1:107,86:30:193:0.446:2	./.	./.	./.	0/1:86,68:32:154:0.442:2	./.
chr3	44943104	rs937838	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,86:32:192:0.450:2	./.	./.	./.	0/1:100,84:32:184:0.457:2	./.
chr3	44943389	rs1995641	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,31:31:31:1.00:2	./.	0/1:42,24:31:66:0.364:2	0/1:28,31:31:59:0.525:2	0/1:61,36:30:97:0.371:2	./.	./.	./.	0/1:48,27:31:75:0.360:2	./.
chr3	44948479	rs3749195	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,73:33:73:1.00:2	0/1:0,48:33:48:1.00:2	./.	0/1:3,82:32:85:0.965:2	0/1:59,42:33:101:0.416:2	0/1:54,44:31:98:0.449:2	0/1:74,47:33:121:0.388:2	0/1:70,74:33:144:0.514:2	./.	0/1:54,43:33:98:0.443:2	./.
chr3	44948590	rs9876921	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,105:32:105:1.00:2	0/1:0,63:31:63:1.00:2	./.	0/1:1,168:32:169:0.994:2	0/1:91,61:32:152:0.401:2	0/1:93,75:31:168:0.446:2	0/1:90,66:32:156:0.423:2	0/1:72,66:32:138:0.478:2	./.	0/1:70,74:32:144:0.514:2	./.
chr3	44948616	rs150462940	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,58:32:125:0.464:2
chr3	44948674	rs1395388	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:17,9:32:26:0.346:2	0/1:18,8:33:26:0.308:2	./.	0/1:15,24:34:39:0.615:2	./.	./.	./.	./.	./.	./.	./.
chr3	44951748	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,87:33:188:0.463:2	./.	./.	./.	./.	./.	./.	./.
chr3	45000626	rs35142429	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,49:31:91:0.538:2	./.	./.
chr3	45017782	rs11547235	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,44:31:75:0.587:2	./.	0/1:37,34:31:71:0.479:2	./.	./.	./.	0/1:25,15:31:40:0.375:2	./.
chr3	45052775	rs6794	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,81:33:81:1.00:2	0/1:0,38:32:38:1.00:2	./.	0/1:1,95:33:96:0.990:2	0/1:69,54:32:123:0.439:2	0/1:59,60:32:119:0.504:2	0/1:79,55:32:134:0.410:2	0/1:58,56:33:114:0.491:2	./.	0/1:54,44:33:98:0.449:2	./.
chr3	45077119	rs11545365	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:28,15:32:43:0.349:2	0/1:18,16:32:34:0.471:2	./.	./.	./.	./.	0/1:28,40:32:68:0.588:2	0/1:28,39:31:67:0.582:2	./.	./.	./.
chr3	45077123	rs13963	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,44:31:44:1.00:2	0/1:0,30:31:30:1.00:2	./.	0/1:33,28:31:61:0.459:2	0/1:34,42:31:76:0.553:2	./.	0/1:28,34:32:62:0.548:2	0/1:27,38:31:65:0.585:2	./.	./.	./.
chr3	45127515	rs9874077	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:32:35:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,7:34:7:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,55:32:55:1.00:2	0/1:2,65:31:67:0.970:2
chr3	45130609	rs35428731	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,84:31:84:1.00:2	0/1:3,64:31:67:0.955:2	./.	./.	0/1:70,49:32:119:0.412:2	./.	./.	./.	./.	./.	./.
chr3	45134822	rs3749191	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,55:31:55:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,3:30:3:1.00:2	./.	0/1:1,101:30:102:0.990:2	0/1:45,42:29:87:0.483:2	0/1:1,92:30:93:0.989:2	0/1:53,45:31:98:0.459:2	0/1:1,100:31:101:0.990:2	./.	0/1:0,53:30:53:1.00:2
chr3	45153708	rs35501071	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,57:32:114:0.500:2	0/1:72,70:32:142:0.493:2	./.	0/1:82,69:31:153:0.457:2	./.	./.	./.	./.
chr3	45187785	rs2276862	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,25:29:43:0.581:2	./.	./.	0/1:40,28:28:68:0.412:2	0/1:26,18:31:44:0.409:2	./.	./.
chr3	45435960	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:31:166:0.024:2	./.	./.	./.
chr3	45436085	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,4:31:95:0.042:2	./.	./.	./.	./.	./.	./.	./.
chr3	45518046	rs145135580	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,83:32:164:0.506:2	0/1:38,33:31:71:0.465:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	45527218	rs7610357	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:31:61:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,9:33:9:1.00:2	0/1:39,48:33:87:0.552:2	0/1:0,81:32:81:1.00:2	0/1:0,83:32:83:1.00:2	0/1:28,49:32:77:0.636:2	0/1:0,74:32:74:1.00:2	0/1:0,69:33:69:1.00:2	0/1:1,51:31:52:0.981:2	0/1:3,92:32:95:0.968:2
chr3	45533224	rs2128361	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:31:47:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,4:32:4:1.00:2	0/1:32,29:30:61:0.475:2	0/1:0,37:29:37:1.00:2	0/1:0,76:31:77:1.00:2	0/1:45,34:30:79:0.430:2	0/1:0,71:30:71:1.00:2	0/1:1,43:30:44:0.977:2	0/1:1,40:31:41:0.976:2	0/1:0,43:30:43:1.00:2
chr3	45557707	rs11549809	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,53:30:99:0.535:2	./.	./.	./.	0/1:2,100:31:102:0.980:2	0/1:0,110:32:110:1.00:2	0/1:1,81:31:82:0.988:2	0/1:0,102:32:102:1.00:2
chr3	45559519	rs2170549	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:29:35:1.00:2	0/1:0,25:28:25:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,40:29:40:1.00:2	0/1:0,28:28:28:1.00:2	0/1:1,29:28:30:0.967:2	0/1:0,28:27:28:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,49:29:49:1.00:2	0/1:0,49:29:49:1.00:2	0/1:0,43:28:43:1.00:2
chr3	45565554	rs267220	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,110:32:110:1.00:2	0/1:0,74:33:74:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,187:33:187:1.00:2	0/1:0,188:32:188:1.00:2	0/1:0,172:32:172:1.00:2	0/1:0,186:32:186:1.00:2	0/1:1,187:33:188:0.995:2	0/1:1,163:33:164:0.994:2	0/1:0,180:33:180:1.00:2	0/1:0,163:32:163:1.00:2
chr3	45636515	rs143204461	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,46:30:89:0.517:2	./.	./.	./.	./.	./.
chr3	45637109	rs141045534	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,50:33:83:0.602:2	./.	./.
chr3	45637230	rs74851793	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,40:33:79:0.506:2	./.	./.	./.	./.	./.
chr3	45637253	rs267237	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,23:31:57:0.404:2	0/1:19,18:33:37:0.486:2	./.	0/1:27,36:31:63:0.571:2	0/1:43,37:31:80:0.463:2	0/1:0,61:31:62:1.00:2	0/1:33,27:30:60:0.450:2	./.	./.	./.	./.
chr3	45637439	rs267236	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,43:32:86:0.506:2	0/1:35,35:31:70:0.500:2	./.	0/1:56,66:32:122:0.541:2	0/1:70,44:31:114:0.386:2	0/1:2,121:32:123:0.984:2	0/1:46,45:32:91:0.495:2	./.	./.	./.	./.
chr3	45677682	.	C	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,8:26:86:0.093:2	0/1:106,14:22:120:0.117:2	0/1:86,14:29:100:0.140:2	0/1:109,7:23:116:0.060:2	0/1:91,8:22:100:0.081:2	0/1:109,6:22:115:0.052:2	0/1:87,11:29:99:0.112:2	0/1:77,6:28:83:0.072:2
chr3	45677686	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:31:106:0.038:2	./.	./.	./.
chr3	45715890	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,6:31:32:0.188:2	./.	./.
chr3	45730937	rs183358538	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,23:32:47:0.489:2	./.	0/1:7,9:32:16:0.563:2	./.
chr3	45754685	rs2271619	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,5:32:16:0.313:2	0/1:4,5:31:9:0.556:2	./.	./.	0/1:4,3:30:7:0.429:2	0/1:6,8:29:14:0.571:2	./.	./.	0/1:8,14:31:22:0.636:2	./.	./.
chr3	45779136	rs1468542	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:32:28:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,20:30:20:1.00:2	0/1:18,14:31:32:0.438:2	0/1:17,5:31:22:0.227:2	0/1:0,24:32:24:1.00:2	0/1:0,37:33:37:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,40:32:40:1.00:2
chr3	45781148	rs3733106	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,29:30:49:0.592:2	./.	0/1:113,69:31:182:0.379:2	./.	./.	0/1:93,89:32:182:0.489:2	./.	0/1:0,172:31:172:1.00:2	0/1:88,86:31:174:0.494:2
chr3	45801393	rs61731475	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,18:29:33:0.545:2	./.	./.	./.	./.	./.	./.	./.
chr3	45817418	rs758386	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:29:86:1.00:2	0/1:0,68:30:68:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,117:30:117:1.00:2	0/1:1,139:29:140:0.993:2	0/1:2,120:30:122:0.984:2	0/1:2,135:30:137:0.985:2	0/1:3,145:29:148:0.980:2	0/1:0,98:30:98:1.00:2	0/1:0,96:29:96:1.00:2	0/1:0,96:28:96:1.00:2
chr3	45837886	rs2271615	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:17,17:32:34:0.500:2	0/1:7,6:30:13:0.462:2	./.	0/1:3,32:31:35:0.914:2	./.	./.	0/1:37,23:30:60:0.383:2	./.	0/1:17,15:32:32:0.469:2	./.	./.
chr3	45869972	rs1129183	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,48:32:126:0.381:2	./.
chr3	45943595	rs17765088	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:29,13:31:42:0.310:2	0/1:6,16:33:22:0.727:2	./.	./.	./.	./.	./.	0/1:36,31:32:67:0.463:2	./.	./.	./.
chr3	45965190	rs41289612	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,70:28:158:0.443:2	./.	./.	./.	./.	./.
chr3	45989044	rs2234358	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,149:32:150:0.993:2	0/1:2,98:32:100:0.980:2	0/1:12,15:31:27:0.556:2	0/1:96,97:33:193:0.503:2	./.	./.	0/1:110,80:32:191:0.421:2	0/1:85,105:32:190:0.553:2	0/1:89,95:33:184:0.516:2	0/1:68,52:32:120:0.433:2	./.
chr3	45996761	rs1463680	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,79:32:80:0.988:2	0/1:0,47:32:47:1.00:2	0/1:6,5:32:11:0.455:2	0/1:0,82:31:82:1.00:2	0/1:51,48:32:99:0.485:2	0/1:53,60:31:113:0.531:2	0/1:0,77:31:77:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,100:32:100:1.00:2	0/1:55,46:32:101:0.455:2	./.
chr3	45999910	rs41289618	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,37:31:75:0.493:2	./.	0/1:38,28:31:66:0.424:2	./.	./.
chr3	46007823	rs13079478	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:52,32:31:84:0.381:2	0/1:27,14:32:41:0.341:2	0/1:9,7:30:16:0.438:2	./.	./.	./.	./.	./.	./.	0/1:61,41:30:102:0.402:2	./.
chr3	46007825	rs13059238	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:52,32:28:84:0.381:2	0/1:26,14:29:40:0.350:2	0/1:9,7:29:16:0.438:2	./.	./.	./.	./.	./.	./.	0/1:60,41:28:102:0.406:2	./.
chr3	46008087	rs13079869	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:72,60:32:132:0.455:2	0/1:52,24:32:76:0.316:2	0/1:6,12:31:18:0.667:2	./.	./.	./.	./.	./.	./.	0/1:78,66:32:144:0.458:2	./.
chr3	46008790	rs3796375	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:23,23:29:46:0.500:2	0/1:19,21:30:40:0.525:2	./.	0/1:32,25:30:57:0.439:2	./.	./.	0/1:32,53:29:86:0.624:2	0/1:49,37:29:86:0.430:2	0/1:38,22:30:60:0.367:2	./.	./.
chr3	46009157	rs78709484	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,4:22:20:0.200:2	./.	0/1:19,5:26:24:0.208:2	./.	./.	./.	0/1:13,5:28:18:0.278:2
chr3	46009487	rs33910087	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:38,44:30:82:0.537:2	0/1:21,33:31:54:0.611:2	0/1:7,8:28:15:0.533:2	./.	./.	./.	./.	./.	./.	0/1:34,31:31:65:0.477:2	./.
chr3	46009491	rs3796376	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,57:31:112:0.509:2	0/1:54,60:31:114:0.526:2	0/1:45,54:31:99:0.545:2	0/1:48,34:31:82:0.415:2	0/1:62,46:31:109:0.426:2	0/1:47,48:33:95:0.505:2	./.	./.
chr3	46009864	rs3733100	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:32:31:1.00:2	0/1:1,23:31:24:0.958:2	0/1:6,3:32:9:0.333:2	0/1:26,21:30:47:0.447:2	./.	./.	0/1:29,26:31:55:0.473:2	0/1:29,27:32:56:0.482:2	0/1:23,24:33:48:0.511:2	0/1:23,17:29:40:0.425:2	./.
chr3	46009881	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:34:47:0.085:2	./.	./.
chr3	46010007	rs13071283	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:17,25:32:42:0.595:2	0/1:22,6:32:28:0.214:2	./.	./.	./.	./.	./.	./.	./.	0/1:29,20:31:49:0.408:2	./.
chr3	46010077	rs4683158	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,33:31:33:1.00:2	0/1:0,16:32:16:1.00:2	./.	0/1:0,41:32:41:1.00:2	0/1:26,25:31:51:0.490:2	0/1:30,17:32:47:0.362:2	0/1:0,49:32:49:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,46:33:46:1.00:2	0/1:20,17:33:37:0.459:2	0/1:11,21:32:32:0.656:2
chr3	46021218	rs4682801	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,131:31:133:0.985:2	0/1:0,79:32:79:1.00:2	0/1:11,11:31:22:0.500:2	0/1:0,169:31:169:1.00:2	0/1:111,73:30:184:0.397:2	0/1:90,89:30:179:0.497:2	0/1:0,186:31:186:1.00:2	0/1:6,184:31:190:0.968:2	0/1:0,190:32:190:1.00:2	0/1:94,67:31:161:0.416:2	0/1:99,91:31:190:0.479:2
chr3	46062556	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:32:134:0.030:2
chr3	46062881	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:30:87:0.046:2	./.
chr3	46063329	rs2230322	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:51,74:32:125:0.592:2	0/1:22,33:32:55:0.600:2	0/1:3,4:32:7:0.571:2	./.	./.	./.	0/1:56,88:31:144:0.611:2	./.	./.	0/1:57,49:32:106:0.462:2	./.
chr3	46245464	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:32:136:0.029:2	./.
chr3	46307556	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:35:76:0.053:2	./.	./.	./.	./.
chr3	46399208	rs1799864	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,78:31:189:0.413:2	./.	0/1:92,93:32:185:0.503:2	./.	./.
chr3	46399432	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:168,5:30:174:0.029:2	0/1:194,5:31:199:0.025:2	./.	./.	./.	./.	./.
chr3	46399442	rs376867283	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:185,5:31:190:0.026:2	0/1:194,5:30:199:0.025:2	./.	./.	./.	./.	./.
chr3	46399444	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:187,5:30:192:0.026:2	./.	./.	./.	./.	./.	./.
chr3	46399798	rs1799865	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:102,70:33:172:0.407:2	0/1:72,47:32:119:0.395:2	0/1:9,16:32:25:0.640:2	./.	./.	./.	./.	./.	./.	./.	0/1:86,93:33:179:0.520:2
chr3	46400062	rs3092960	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:27,15:29:42:0.357:2	0/1:15,6:29:21:0.286:2	./.	./.	./.	./.	./.	0/1:19,33:30:52:0.635:2	./.	./.	./.
chr3	46414557	rs1799863	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,83:33:192:0.432:2	0/1:103,87:32:190:0.458:2	./.	./.	./.	0/1:112,79:33:191:0.414:2	0/1:98,86:33:184:0.467:2
chr3	46414975	rs62625034	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:47,15:30:62:0.242:2	0/1:34,8:31:42:0.190:2	./.	./.	./.	./.	./.	0/1:61,13:28:74:0.176:2	./.	./.	./.
chr3	46415742	rs41414147	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,4:32:18:0.222:2	./.
chr3	46416470	rs1800874	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,67:31:137:0.489:2	0/1:39,34:31:73:0.466:2	0/1:8,7:31:15:0.467:2	0/1:100,76:31:176:0.432:2	0/1:95,67:31:162:0.414:2	./.	0/1:101,58:31:159:0.365:2	./.	0/1:94,62:32:156:0.397:2	0/1:71,51:31:122:0.418:2	0/1:101,73:31:174:0.420:2
chr3	46417290	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,7:32:22:0.318:2	./.	./.	./.	./.	./.	./.	./.
chr3	46417312	rs746492	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,19:32:55:0.345:2	0/1:21,19:32:40:0.475:2	./.	0/1:24,13:32:38:0.351:2	0/1:26,13:31:39:0.333:2	./.	0/1:26,17:31:43:0.395:2	./.	0/1:70,22:32:92:0.239:2	0/1:43,9:32:52:0.173:2	0/1:48,27:32:75:0.360:2
chr3	46417557	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,4:31:83:0.048:2	./.	./.	./.	./.	./.	./.
chr3	46449863	rs111863112	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,111:32:188:0.590:2	0/1:88,96:32:184:0.522:2	./.	0/1:61,106:32:167:0.635:2	./.	./.	./.	./.
chr3	46449864	rs6808835	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,79:32:171:0.462:2	0/1:56,42:31:98:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	46449978	rs11266744	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:75,55:32:130:0.423:2	0/1:37,27:32:64:0.422:2	0/1:4,3:33:7:0.429:2	0/1:71,65:33:136:0.478:2	0/1:52,74:32:126:0.587:2	./.	0/1:66,57:33:123:0.463:2	./.	0/1:81,83:33:164:0.506:2	0/1:65,56:32:121:0.463:2	0/1:88,70:32:158:0.443:2
chr3	46450020	rs370200165	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,57:31:120:0.475:2	./.	./.
chr3	46450070	rs3204849	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,28:32:61:0.459:2	0/1:12,23:31:35:0.657:2	0/1:4,4:30:8:0.500:2	0/1:19,15:31:34:0.441:2	0/1:26,22:31:48:0.458:2	./.	0/1:20,24:30:44:0.545:2	./.	0/1:38,39:31:77:0.506:2	0/1:29,17:31:46:0.370:2	0/1:35,21:31:56:0.375:2
chr3	46450072	rs6441977	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,30:32:60:0.500:2	0/1:24,10:32:34:0.294:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	46450085	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,3:34:51:0.059:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	46450884	rs1140865	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,9:34:28:0.321:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	46479430	rs185577528	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,44:31:79:0.557:2	./.	./.	./.	./.	./.	./.
chr3	46480801	rs9110	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,82:32:192:0.427:2	0/1:103,83:33:186:0.446:2	0/1:104,88:33:192:0.458:2	0/1:93,97:32:190:0.511:2	./.
chr3	46480958	rs2073495	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,26:31:70:0.371:2	0/1:21,20:30:42:0.488:2	0/1:5,10:31:15:0.667:2	0/1:38,38:31:76:0.500:2	./.	./.	./.	0/1:41,32:30:73:0.438:2	0/1:40,37:31:77:0.481:2	./.	0/1:42,37:30:79:0.468:2
chr3	46482980	rs17285324	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,30:31:52:0.577:2	0/1:24,22:31:46:0.478:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	46484964	rs1042073	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,135:31:135:1.00:2	./.	./.	0/1:107,65:31:172:0.378:2	0/1:95,76:31:171:0.444:2	0/1:87,54:32:141:0.383:2	0/1:56,41:33:97:0.423:2	./.
chr3	46488854	rs2239692	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,35:32:79:0.443:2	0/1:53,50:32:103:0.485:2	./.	./.	./.
chr3	46490366	rs2230895	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,43:31:91:0.473:2	0/1:53,44:31:97:0.454:2	./.	./.	./.
chr3	46490474	rs2230894	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,26:30:39:0.667:2	0/1:18,37:29:55:0.673:2	./.	./.	./.
chr3	46491985	rs61740470	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,25:31:50:0.500:2	./.	0/1:48,40:32:89:0.455:2	./.	./.	./.	./.
chr3	46501213	rs1126478	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,183:34:185:0.989:2	./.	./.	0/1:109,83:34:192:0.432:2	0/1:83,106:33:189:0.561:2	0/1:93,76:33:169:0.450:2	0/1:104,88:33:192:0.458:2	./.
chr3	46501268	rs1126477	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,159:31:160:0.994:2	./.	./.	0/1:85,75:32:160:0.469:2	0/1:67,75:32:142:0.528:2	0/1:71,107:32:178:0.601:2	0/1:63,82:31:145:0.566:2	./.
chr3	46568942	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:33:64:0.063:2
chr3	46580591	rs17078944	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,31:33:82:0.378:2	0/1:32,17:32:49:0.347:2	./.	0/1:1,87:33:88:0.989:2	0/1:40,24:32:64:0.375:2	./.	./.	0/1:72,37:32:109:0.339:2	./.	./.	0/1:71,66:33:137:0.482:2
chr3	46593058	rs146344015	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,13:31:41:0.317:2	./.	./.	./.	./.	./.
chr3	46620614	rs11130097	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,70:32:136:0.515:2	0/1:62,46:32:108:0.426:2	0/1:8,7:25:15:0.467:2	0/1:72,65:32:138:0.474:2	0/1:1,60:31:61:0.984:2	0/1:0,114:32:114:1.00:2	./.	0/1:62,75:33:137:0.547:2	0/1:0,140:32:140:1.00:2	0/1:54,53:33:107:0.495:2	0/1:1,160:32:161:0.994:2
chr3	46621450	rs13075468	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:106,58:30:164:0.354:2	./.	./.	./.	./.	./.	./.
chr3	46622629	rs112928637	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,39:31:94:0.415:2
chr3	46622706	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,6:35:179:0.034:2	./.	./.
chr3	46712490	rs77367607	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,35:32:76:0.467:2
chr3	46713015	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:31:157:0.025:2	./.	./.
chr3	46713457	rs7625303	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,40:29:107:0.374:2	0/1:93,61:28:155:0.396:2	./.	0/1:66,44:29:110:0.400:2	0/1:1,106:29:107:0.991:2	./.	0/1:45,47:29:92:0.511:2	./.
chr3	46714821	rs11130104	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	0/1:20,22:28:42:0.524:2	./.	./.	0/1:0,50:30:50:1.00:2	0/1:12,11:29:23:0.478:2	./.
chr3	46723551	rs4683310	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,22:32:65:0.338:2	0/1:26,20:30:46:0.435:2	0/1:7,9:30:16:0.563:2	0/1:59,46:31:105:0.438:2	./.	0/1:62,39:31:101:0.386:2	./.	./.	0/1:71,28:30:99:0.283:2	0/1:37,52:32:89:0.584:2	./.
chr3	46727909	rs34935085	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,49:30:126:0.389:2	./.	./.	./.	./.
chr3	46729191	rs77819425	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,62:32:128:0.484:2	./.	./.	./.	./.	./.
chr3	46729757	rs7642448	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,29:33:61:0.475:2	0/1:28,33:32:61:0.541:2	./.	0/1:2,76:32:78:0.974:2	0/1:0,71:32:71:1.00:2	0/1:44,28:32:72:0.389:2	0/1:25,38:32:63:0.603:2	0/1:0,78:32:78:1.00:2
chr3	46730887	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,10:14:84:0.119:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	46747377	rs189895472	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,70:32:184:0.380:2	./.	./.	./.	./.	./.	./.	./.
chr3	46753970	rs35759696	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,53:31:120:0.442:2	./.	./.	./.	./.
chr3	46755937	rs12492868	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,30:31:62:0.484:2	./.	./.	0/1:2,63:31:65:0.969:2	0/1:0,85:31:85:1.00:2	./.	./.	./.
chr3	46757104	rs200918398	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,68:30:140:0.486:2	./.
chr3	46759010	rs34788938	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,46:31:97:0.474:2	./.	./.	0/1:54,26:30:80:0.325:2	0/1:0,89:30:89:1.00:2	./.	./.	./.
chr3	46783959	rs58830807	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,169:28:171:0.988:2	0/1:1,180:28:181:0.994:2	./.	./.	0/1:93,64:29:157:0.408:2
chr3	46784015	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:80,15:14:97:0.158:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,9:17:96:0.094:2	0/1:91,9:16:101:0.090:2
chr3	46784467	rs58943210	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,69:31:69:1.00:2	0/1:0,69:30:69:1.00:2	./.	./.	0/1:27,47:32:74:0.635:2
chr3	46899728	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:29:71:0.058:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	46904812	rs2233264	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,22:31:73:0.301:2	./.	./.	./.	./.
chr3	46935397	rs200498439	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,6:29:185:0.032:2	./.	./.
chr3	46935398	rs201200407	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,18:14:156:0.116:2	./.
chr3	46944274	rs1138518	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:41,11:27:52:0.212:2	0/1:24,8:28:32:0.250:2	./.	0/1:30,33:30:63:0.524:2	0/1:1,48:29:49:0.980:2	0/1:33,23:29:56:0.411:2	0/1:27,12:30:39:0.308:2	./.	0/1:18,21:29:39:0.538:2	0/1:0,37:29:37:1.00:2	./.
chr3	47018214	rs936181	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:29:52:1.00:2	0/1:0,37:28:37:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,82:29:82:1.00:2	0/1:0,102:28:102:1.00:2	0/1:0,88:29:88:1.00:2	0/1:0,97:28:97:1.00:2	0/1:3,104:28:107:0.972:2	0/1:0,75:29:75:1.00:2	0/1:0,75:28:75:1.00:2	0/1:0,73:28:73:1.00:2
chr3	47030611	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:104,4:31:108:0.037:2	./.	./.	./.	./.	./.	./.
chr3	47036565	rs17079425	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,71:30:149:0.483:2	0/1:83,70:31:153:0.458:2	./.	./.	./.
chr3	47036578	rs115611407	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,59:32:114:0.518:2	0/1:76,69:32:145:0.476:2	./.	./.	./.
chr3	47036756	rs11720139	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:17,7:30:24:0.292:2	0/1:14,11:28:25:0.440:2	./.	0/1:0,36:29:36:1.00:2	./.	0/1:0,46:27:46:1.00:2	./.	0/1:21,13:27:34:0.382:2	0/1:10,13:29:23:0.565:2	./.	0/1:0,26:29:26:1.00:2
chr3	47036991	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:31:61:0.066:2	./.
chr3	47038054	rs116456978	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,32:31:68:0.471:2	0/1:28,20:32:48:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	47039704	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:33:68:0.059:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	47040589	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:32:74:0.054:2	./.	./.	./.	./.	./.
chr3	47041618	rs369906164	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,34:29:72:0.472:2	./.
chr3	47043238	rs12489851	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,47:31:118:0.402:2	0/1:61,54:31:115:0.470:2	./.	./.	./.
chr3	47043538	rs2305634	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:20,9:31:29:0.310:2	0/1:12,12:32:24:0.500:2	./.	./.	0/1:0,41:31:41:1.00:2	./.	0/1:36,13:33:49:0.265:2	./.	0/1:22,19:32:41:0.463:2	0/1:0,19:31:19:1.00:2	./.
chr3	47043622	rs2305635	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,21:28:35:0.600:2	0/1:9,9:30:18:0.500:2	0/1:0,3:28:3:1.00:2	0/1:0,38:28:38:1.00:2	./.	0/1:0,34:28:34:1.00:2	./.	0/1:16,15:27:31:0.484:2	0/1:20,28:29:48:0.583:2	./.	0/1:0,17:29:17:1.00:2
chr3	47045739	rs1079276	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:28,15:30:43:0.349:2	0/1:19,11:31:30:0.367:2	./.	./.	0/1:3,50:29:53:0.943:2	./.	0/1:36,37:30:75:0.507:2	./.	0/1:13,18:30:31:0.581:2	0/1:0,29:30:29:1.00:2	./.
chr3	47045846	rs2305637	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:20,17:30:37:0.459:2	0/1:21,14:29:35:0.400:2	./.	./.	0/1:46,25:29:71:0.352:2	./.	./.	./.	./.	0/1:16,17:29:33:0.515:2	./.
chr3	47125385	rs4082155	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:97,94:32:191:0.492:2	0/1:73,68:32:141:0.482:2	0/1:21,26:32:47:0.553:2	./.	0/1:2,176:32:178:0.989:2	./.	0/1:109,85:32:195:0.438:2	./.	0/1:92,79:33:171:0.462:2	0/1:2,175:32:177:0.989:2	./.
chr3	47161214	rs11923706	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:8,3:34:11:0.273:2	./.	./.	./.	0/1:0,11:32:11:1.00:2	./.	0/1:0,2:33:2:1.00:2	0/1:5,3:33:8:0.375:2	0/1:8,10:34:18:0.556:2	0/1:0,11:32:11:1.00:2	./.
chr3	47162661	rs6767907	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:39,40:31:79:0.506:2	0/1:18,17:31:35:0.486:2	0/1:19,6:32:25:0.240:2	./.	0/1:0,49:31:49:1.00:2	./.	0/1:1,49:32:50:0.980:2	0/1:49,41:32:90:0.456:2	0/1:34,34:33:68:0.500:2	0/1:1,61:31:62:0.984:2	./.
chr3	47162886	rs76208147	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,6:33:15:0.400:2	0/1:10,5:31:15:0.333:2	./.	./.	./.
chr3	47282303	rs2276853	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:95,73:32:168:0.435:2	0/1:41,42:32:83:0.506:2	0/1:20,12:30:32:0.375:2	./.	0/1:0,131:31:131:1.00:2	./.	0/1:107,89:32:196:0.454:2	./.	0/1:108,80:33:188:0.426:2	0/1:0,159:32:159:1.00:2	./.
chr3	47288905	rs3821879	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,61:32:123:0.496:2	0/1:82,66:32:148:0.446:2	./.	./.	./.
chr3	47385091	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:32:97:0.041:2	./.	./.	./.	./.
chr3	47449058	rs900688	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:33:18:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,25:32:25:1.00:2	0/1:1,29:31:30:0.967:2	0/1:0,25:31:25:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,39:31:39:1.00:2
chr3	47452087	rs900689	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:33:49:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,82:33:82:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,93:33:93:1.00:2	0/1:0,76:33:76:1.00:2	0/1:0,86:32:86:1.00:2
chr3	47452118	rs6780013	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:30:10:0.400:2	0/1:0,87:30:87:1.00:2	./.	0/1:0,61:30:61:1.00:2	./.	0/1:34,34:31:68:0.500:2	0/1:37,37:32:74:0.500:2	0/1:36,26:30:62:0.419:2	0/1:1,64:30:65:0.985:2
chr3	47452786	rs1531875	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,42:30:42:1.00:2	0/1:0,17:31:17:1.00:2	./.	./.	0/1:0,27:30:27:1.00:2	./.	0/1:13,15:29:28:0.536:2	./.	0/1:19,17:31:36:0.472:2	0/1:16,18:29:34:0.529:2	./.
chr3	47454232	rs111678754	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:32:130:0.031:2	./.	./.	./.	./.	./.
chr3	47454296	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:33:78:0.051:2	./.	./.	./.	./.	./.
chr3	47454399	rs6789730	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:28:27:1.00:2	0/1:0,15:26:16:1.00:2	0/1:0,3:24:3:1.00:2	0/1:0,22:22:25:1.00:2	0/1:0,22:22:22:1.00:2	0/1:0,28:22:33:1.00:2	0/1:0,21:22:24:1.00:2	0/1:1,22:22:28:0.957:2	0/1:0,37:25:40:1.00:2	0/1:0,22:21:24:1.00:2	0/1:0,21:26:25:1.00:2
chr3	47455441	rs185806499	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,82:31:181:0.453:2	./.	./.	./.	./.
chr3	47459679	rs12487736	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,15:31:15:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,2:31:2:1.00:2	./.	0/1:0,25:32:25:1.00:2	./.	0/1:3,8:31:11:0.727:2	./.	0/1:7,17:32:24:0.708:2	0/1:7,9:31:16:0.563:2	./.
chr3	47460178	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,4:31:47:0.085:2	./.	./.	./.	./.	./.	./.
chr3	47462200	rs900690	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:32:23:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,2:32:2:1.00:2
chr3	47543248	rs181991988	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,103:31:189:0.545:2	./.	./.	./.
chr3	47618953	rs3732530	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,26:31:26:1.00:2	0/1:0,5:29:5:1.00:2	./.	0/1:18,19:30:37:0.514:2	0/1:22,9:31:32:0.290:2	0/1:24,19:31:43:0.442:2	0/1:31,22:30:53:0.415:2	0/1:23,26:30:49:0.531:2	0/1:22,26:30:48:0.542:2	0/1:15,16:29:31:0.516:2	0/1:0,37:31:37:1.00:2
chr3	47712202	rs1141601	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:5,139:33:144:0.965:2	0/1:2,72:33:74:0.973:2	./.	0/1:61,62:33:123:0.504:2	./.	0/1:74,80:32:154:0.519:2	0/1:60,54:32:114:0.474:2	./.	0/1:96,66:33:162:0.407:2	./.	0/1:2,157:33:159:0.987:2
chr3	47891166	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:33:139:0.029:2	./.	./.
chr3	47956424	rs1137524	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:28,24:32:52:0.462:2	0/1:11,17:32:28:0.607:2	0/1:25,19:31:44:0.432:2	0/1:9,13:32:22:0.591:2	./.	0/1:35,31:33:66:0.470:2	0/1:22,15:32:37:0.405:2	./.
chr3	47957996	rs2230169	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,77:33:185:0.416:2	./.	./.	./.	./.	./.	./.	./.
chr3	47958037	rs1060407	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,9:30:31:0.290:2	0/1:118,75:31:193:0.389:2	0/1:88,85:30:173:0.491:2	0/1:108,91:30:199:0.457:2	0/1:126,65:30:191:0.340:2	./.	0/1:111,80:32:191:0.419:2	0/1:98,92:31:190:0.484:2	./.
chr3	47958144	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,4:30:99:0.040:2	./.	0/1:104,4:31:108:0.037:2	0/1:161,8:30:169:0.047:2	./.	./.	0/1:172,6:33:178:0.034:2
chr3	47958147	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,4:29:95:0.042:2	./.	0/1:104,4:31:108:0.037:2	0/1:157,8:30:165:0.048:2	./.	./.	0/1:169,6:28:175:0.034:2
chr3	47958222	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,7:32:189:0.037:2
chr3	47958225	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,7:32:191:0.037:2
chr3	48016946	rs79021891	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,23:31:50:0.460:2	./.	./.	./.	./.	./.
chr3	48040283	rs11711953	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,52:32:134:0.388:2	./.	./.	./.	./.	./.	./.	./.
chr3	48222247	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:29:100:0.040:2
chr3	48226194	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,9:33:25:0.360:2	./.	./.	./.	./.	./.	./.	./.
chr3	48229366	rs146179438	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,3:31:15:0.200:2	0/1:4,4:31:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	48282695	rs9847953	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,7:32:8:0.875:2	./.	0/1:10,32:31:42:0.762:2	0/1:16,30:32:46:0.652:2	0/1:26,36:32:62:0.581:2	0/1:0,44:32:44:1.00:2	0/1:25,25:34:50:0.500:2	0/1:19,36:32:55:0.655:2	./.
chr3	48289123	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:31:117:0.034:2	./.	./.	./.	./.	./.
chr3	48309828	rs11718329	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,11:31:45:0.244:2	0/1:30,20:32:50:0.400:2	0/1:21,13:33:34:0.382:2	0/1:3,62:32:65:0.954:2	0/1:40,19:34:59:0.322:2	0/1:19,23:33:42:0.548:2	./.
chr3	48336688	rs79445720	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,12:20:96:0.125:2	0/1:75,11:22:86:0.128:2	0/1:89,9:21:98:0.092:2	0/1:96,7:20:103:0.068:2	0/1:92,13:24:105:0.124:2	./.	./.	./.
chr3	48360992	rs11718350	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:33:15:0.600:2	./.	0/1:34,43:32:77:0.558:2	0/1:51,65:32:116:0.560:2	0/1:45,54:33:99:0.545:2	0/1:2,135:33:137:0.985:2	0/1:58,67:33:125:0.536:2	0/1:50,58:32:108:0.537:2	./.
chr3	48414274	rs17080138	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,80:32:188:0.426:2
chr3	48419897	rs6442117	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,5:32:14:0.357:2	0/1:0,71:31:71:1.00:2	0/1:34,56:32:90:0.622:2	0/1:27,34:32:61:0.557:2	./.	0/1:2,74:32:76:0.974:2	./.	./.	0/1:55,28:32:83:0.337:2
chr3	48419898	rs79525977	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,32:32:89:0.360:2	./.	0/1:50,37:32:87:0.425:2	./.	0/1:39,44:33:83:0.530:2	0/1:49,34:33:83:0.410:2	./.
chr3	48422235	rs6784322	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,85:31:86:0.988:2	0/1:0,43:32:43:1.00:2	0/1:15,6:31:21:0.286:2	./.	0/1:61,47:31:108:0.435:2	0/1:66,54:30:121:0.450:2	0/1:1,89:32:90:0.989:2	./.	0/1:1,138:32:139:0.993:2	0/1:0,108:31:108:1.00:2	0/1:66,64:32:130:0.492:2
chr3	48447172	rs150634780	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,22:32:47:0.468:2	./.	./.	./.	./.	./.	./.	./.
chr3	48451952	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,6:19:30:0.200:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	48452335	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:31:154:0.026:2	./.	./.
chr3	48461313	rs2362450	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,60:33:60:1.00:2	0/1:1,34:32:35:0.971:2	0/1:4,8:33:12:0.667:2	./.	0/1:72,51:33:123:0.415:2	0/1:54,55:32:109:0.505:2	0/1:0,111:32:111:1.00:2	./.	0/1:2,74:33:76:0.974:2	0/1:0,66:32:66:1.00:2	0/1:55,22:32:77:0.286:2
chr3	48462089	rs202001450	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:162,4:33:166:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr3	48463799	rs114964512	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,32:30:65:0.492:2	./.	./.
chr3	48465206	rs61729213	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,33:31:77:0.429:2	./.	./.	./.	./.	./.
chr3	48474242	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:33:80:0.050:2	./.	./.	./.	./.
chr3	48474249	rs2279077	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,23:32:23:1.00:2	0/1:0,33:32:33:1.00:2	./.	./.	0/1:31,23:32:54:0.426:2	0/1:22,30:32:52:0.577:2	0/1:1,70:32:71:0.986:2	./.	0/1:1,32:34:34:0.970:2	0/1:0,36:33:36:1.00:2	0/1:21,24:32:45:0.533:2
chr3	48476431	rs13062723	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,55:33:55:1.00:2
chr3	48485259	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,4:30:40:0.100:2	./.	./.	./.	./.	./.	./.
chr3	48501929	rs34508594	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,40:31:77:0.519:2	./.
chr3	48506327	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,94:30:170:0.553:2	./.	./.	./.	./.	./.	./.	./.
chr3	48508585	rs11797	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,95:30:96:0.990:2	0/1:0,46:30:46:1.00:2	0/1:16,12:29:28:0.429:2	./.	0/1:114,75:30:189:0.397:2	0/1:78,75:29:153:0.490:2	0/1:2,154:30:156:0.987:2	./.	0/1:0,130:30:130:1.00:2	0/1:0,94:30:94:1.00:2	0/1:51,54:30:106:0.514:2
chr3	48604016	rs17256786	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:29,22:31:51:0.431:2	0/1:26,16:32:42:0.381:2	./.	./.	./.	./.	0/1:79,48:32:127:0.378:2	./.	0/1:25,24:32:49:0.490:2	./.	0/1:36,19:31:55:0.345:2
chr3	48610946	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:32:182:0.022:2	./.
chr3	48621503	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,4:32:114:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr3	48623124	rs35761247	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:31:9:0.556:2	./.	0/1:43,36:31:79:0.456:2	./.	./.	./.	./.	./.	./.
chr3	48625266	rs1264194	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,84:29:87:0.966:2	0/1:0,56:30:56:1.00:2	0/1:0,12:30:12:1.00:2	0/1:86,65:29:151:0.430:2	0/1:5,156:29:161:0.969:2	0/1:100,64:29:164:0.390:2	0/1:0,110:29:110:1.00:2	./.	0/1:0,104:29:104:1.00:2	0/1:68,45:29:113:0.398:2	0/1:49,25:28:74:0.338:2
chr3	48627789	rs116005007	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,64:31:111:0.577:2
chr3	48629575	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:125,4:32:129:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr3	48630853	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	48638801	rs62618742	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,8:31:19:0.421:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	48659009	rs9834639	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:46,36:29:82:0.439:2	0/1:28,20:31:48:0.417:2	./.	./.	./.	./.	0/1:46,76:29:122:0.623:2	./.	0/1:50,56:31:106:0.528:2	./.	./.
chr3	48667119	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	48669447	rs13324142	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:54,43:31:97:0.443:2	0/1:41,31:31:73:0.431:2	./.	./.	./.	./.	0/1:68,87:31:155:0.561:2	./.	0/1:51,66:32:117:0.564:2	./.	0/1:47,54:31:101:0.535:2
chr3	48681053	rs9868809	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:19,14:29:33:0.424:2	0/1:8,7:31:15:0.467:2	./.	./.	./.	./.	0/1:48,33:31:81:0.407:2	./.	0/1:21,11:31:32:0.344:2	./.	0/1:27,25:31:52:0.481:2
chr3	48685790	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:30:73:0.055:2	./.	./.	./.
chr3	48690551	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:33:89:0.045:2
chr3	48691316	rs12107252	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:45,35:29:80:0.438:2	0/1:24,21:29:45:0.467:2	./.	0/1:71,47:29:118:0.398:2	./.	./.	0/1:63,55:28:118:0.466:2	./.	0/1:51,40:28:91:0.440:2	./.	0/1:54,39:29:93:0.419:2
chr3	48694147	rs2286651	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	0/1:0,3:30:3:1.00:2
chr3	48697654	rs3821875	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:62,44:30:106:0.415:2	0/1:33,30:31:63:0.476:2	./.	./.	./.	./.	0/1:61,65:31:126:0.516:2	./.	0/1:54,56:31:110:0.509:2	./.	0/1:58,38:31:96:0.396:2
chr3	48699401	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,4:32:34:0.118:2	./.
chr3	48699519	rs3733086	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:18,19:31:37:0.514:2	0/1:11,17:31:28:0.607:2	./.	./.	./.	./.	0/1:15,13:31:28:0.464:2	./.	0/1:22,10:31:32:0.313:2	./.	0/1:35,16:31:51:0.314:2
chr3	48725707	rs1048940	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:56,41:30:97:0.423:2	0/1:35,30:32:65:0.462:2	./.	./.	./.	./.	0/1:95,100:30:195:0.513:2	./.	0/1:85,81:31:166:0.488:2	./.	0/1:69,74:30:143:0.517:2
chr3	48727112	rs4858798	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,33:31:70:0.471:2	0/1:39,27:31:66:0.409:2	0/1:0,16:31:16:1.00:2	0/1:75,44:31:119:0.370:2	0/1:0,96:31:96:1.00:2	0/1:69,33:30:102:0.324:2	0/1:43,46:32:90:0.517:2	./.	0/1:66,56:32:122:0.459:2	0/1:0,111:31:111:1.00:2	0/1:57,57:32:114:0.500:2
chr3	48802465	rs2230509	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,42:32:110:0.382:2	./.	./.	./.
chr3	48965078	rs34221642	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:31,30:30:61:0.492:2	0/1:23,19:30:42:0.452:2	./.	./.	./.	./.	./.	./.	./.	0/1:18,23:30:41:0.561:2	./.
chr3	49017887	rs61736369	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:33:64:0.063:2
chr3	49017907	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:32:59:0.068:2
chr3	49017911	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:32:57:0.070:2
chr3	49020664	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,4:32:104:0.038:2	./.	./.	./.	./.	./.	./.
chr3	49027948	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,4:31:56:0.071:2	./.	./.	./.	./.	./.	./.	./.
chr3	49042339	.	C	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,6:28:66:0.091:2	0/1:63,4:30:67:0.060:2	./.	0/1:75,7:22:82:0.085:2	0/1:79,5:27:84:0.060:2	./.	./.	./.
chr3	49049501	rs200826969	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,23:20:85:0.271:2	./.	0/1:15,7:22:22:0.318:2	0/1:94,36:20:130:0.277:2	0/1:91,44:21:135:0.326:2	0/1:92,44:23:136:0.324:2	0/1:85,38:18:124:0.309:2	0/1:91,43:20:134:0.321:2	0/1:93,45:17:138:0.326:2	0/1:70,27:22:97:0.278:2	0/1:89,38:22:127:0.299:2
chr3	49050902	rs368760845	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,63:31:131:0.481:2	./.	./.	./.	./.	./.	./.
chr3	49051371	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,4:32:70:0.057:2	./.	./.	./.	./.	./.	./.	./.
chr3	49054692	rs3087866	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:30:65:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,5:29:5:1.00:2	0/1:55,50:30:105:0.476:2	0/1:0,68:30:68:1.00:2	0/1:0,73:31:73:1.00:2	0/1:0,94:30:94:1.00:2	0/1:124,6:30:130:0.046:2	0/1:0,100:31:100:1.00:2	0/1:0,91:31:91:1.00:2	0/1:1,97:30:98:0.990:2
chr3	49063846	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,12:33:19:0.632:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	49066188	rs200971263	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,43:31:77:0.558:2	./.
chr3	49067904	rs61729488	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,25:32:59:0.424:2	0/1:18,11:32:29:0.379:2	./.	./.	./.	0/1:21,31:32:52:0.596:2	0/1:41,34:32:75:0.453:2	./.	0/1:27,26:33:53:0.491:2	./.	0/1:35,12:31:47:0.255:2
chr3	49137662	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:30:86:0.047:2	./.
chr3	49141088	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,4:33:31:0.129:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	49141116	rs5030795	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,9:31:28:0.321:2	0/1:7,10:31:17:0.588:2	./.	./.	./.	0/1:12,24:31:36:0.667:2	0/1:26,16:30:42:0.381:2	./.	0/1:24,8:32:32:0.250:2	./.	0/1:22,18:30:40:0.450:2
chr3	49142084	rs148998142	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,4:31:71:0.056:2	./.	./.	./.	./.	./.	./.
chr3	49148448	rs190408179	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,40:30:101:0.396:2	./.
chr3	49156473	rs11552724	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,54:33:110:0.491:2	0/1:28,34:32:62:0.548:2	./.	./.	./.	0/1:92,92:32:184:0.500:2	0/1:109,78:33:187:0.417:2	./.	0/1:112,76:33:188:0.404:2	./.	0/1:107,79:33:186:0.425:2
chr3	49161356	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,10:31:21:0.476:2	0/1:5,3:31:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	49161660	rs34290943	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,46:32:104:0.442:2	0/1:43,33:31:77:0.434:2	0/1:133,3:38:136:0.022:2	./.	./.	./.	./.
chr3	49162284	rs34759087	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:30:6:0.667:2	0/1:46,48:29:94:0.511:2	0/1:55,46:29:101:0.455:2	0/1:49,29:29:78:0.372:2	./.	./.	./.	./.	./.
chr3	49200627	rs4955418	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,31:28:88:0.352:2	0/1:46,24:29:70:0.343:2	0/1:0,16:29:16:1.00:2	0/1:69,68:29:137:0.496:2	0/1:0,183:28:183:1.00:2	0/1:117,69:29:186:0.371:2	0/1:104,75:28:179:0.419:2	./.	0/1:82,58:29:140:0.414:2	0/1:0,125:29:125:1.00:2	0/1:44,43:28:87:0.494:2
chr3	49200692	rs4955419	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,29:33:74:0.392:2	0/1:29,15:32:44:0.341:2	0/1:0,16:33:16:1.00:2	0/1:76,60:33:136:0.441:2	0/1:0,150:32:150:1.00:2	0/1:74,51:32:125:0.408:2	0/1:86,59:32:145:0.407:2	./.	0/1:63,55:33:118:0.466:2	0/1:0,101:33:101:1.00:2	0/1:44,36:32:80:0.450:2
chr3	49201400	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:32:112:0.036:2
chr3	49215966	rs9837625	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,21:32:44:0.477:2	0/1:14,20:32:34:0.588:2	./.	./.	./.	0/1:39,49:32:88:0.557:2	0/1:35,32:32:67:0.478:2	./.	0/1:47,32:33:79:0.405:2	./.	0/1:44,32:32:76:0.421:2
chr3	49273996	rs12631989	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:86,77:32:163:0.472:2	0/1:52,46:32:98:0.469:2	0/1:0,14:31:14:1.00:2	0/1:112,64:32:176:0.364:2	0/1:1,109:31:110:0.991:2	0/1:105,82:31:187:0.439:2	0/1:62,54:32:116:0.466:2	./.	0/1:104,74:32:178:0.416:2	0/1:0,166:32:166:1.00:2	0/1:105,79:32:184:0.429:2
chr3	49293819	rs147025639	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	49294250	rs13068038	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,15:31:41:0.366:2	0/1:11,14:32:25:0.560:2	./.	./.	./.	0/1:25,22:32:47:0.468:2	0/1:26,15:32:41:0.366:2	./.	0/1:27,29:31:56:0.518:2	./.	0/1:37,31:32:68:0.456:2
chr3	49294377	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:29:35:0.114:2	./.
chr3	49313978	rs13077498	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,60:32:124:0.484:2	0/1:39,27:32:66:0.409:2	./.	./.	./.	0/1:74,70:31:144:0.486:2	0/1:46,51:32:97:0.526:2	./.	0/1:95,70:32:165:0.424:2	./.	0/1:73,51:32:124:0.411:2
chr3	49343175	rs2230929	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:36,47:33:83:0.566:2	0/1:39,24:32:63:0.381:2	./.	./.	0/1:53,45:31:98:0.459:2	0/1:64,38:31:102:0.373:2	0/1:3,102:32:105:0.971:2	./.	0/1:0,98:32:98:1.00:2	0/1:52,36:32:88:0.409:2	0/1:3,113:32:116:0.974:2
chr3	49348950	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,10:31:71:0.141:2
chr3	49362369	rs56038006	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:90,103:31:193:0.534:2	0/1:56,62:31:118:0.525:2	./.	./.	0/1:105,86:32:191:0.450:2	0/1:98,92:31:191:0.484:2	0/1:4,183:31:188:0.979:2	./.	0/1:2,185:32:187:0.989:2	0/1:102,91:31:193:0.472:2	0/1:1,174:31:175:0.994:2
chr3	49394834	rs1050450	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:109,76:30:185:0.411:2	0/1:84,69:31:153:0.451:2	0/1:16,18:31:34:0.529:2	0/1:111,79:31:191:0.416:2	0/1:18,181:32:199:0.910:2	0/1:106,89:31:195:0.456:2	0/1:25,160:32:186:0.865:2	./.	0/1:9,178:31:187:0.952:2	0/1:113,80:31:193:0.415:2	0/1:9,167:31:176:0.949:2
chr3	49395133	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:30:123:0.033:2	./.
chr3	49395482	rs201944086	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:25,7:30:32:0.219:2	0/1:13,8:30:21:0.381:2	./.	0/1:29,6:31:35:0.171:2	./.	0/1:28,5:30:33:0.152:2	./.	0/1:40,8:29:48:0.167:2	./.	0/1:35,4:30:39:0.103:2	./.
chr3	49395586	.	G	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:53,5:31:58:0.086:2	0/1:32,5:31:37:0.135:2	./.	0/1:88,4:30:92:0.043:2	./.	./.	./.	0/1:89,8:32:97:0.082:2	0/1:78,4:34:82:0.049:2	./.	./.
chr3	49395757	rs1800668	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,10:29:23:0.435:2	0/1:2,17:29:19:0.895:2	0/1:11,3:30:14:0.214:2	0/1:0,14:30:14:1.00:2	./.	0/1:0,14:30:14:1.00:2	0/1:10,11:29:21:0.524:2	0/1:0,5:31:5:1.00:2
chr3	49455330	rs11715915	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,22:32:38:0.579:2	0/1:9,16:31:25:0.640:2	0/1:0,4:32:4:1.00:2	0/1:23,13:30:36:0.361:2	0/1:0,39:31:39:1.00:2	0/1:29,23:29:52:0.442:2	0/1:1,38:31:39:0.974:2	./.	0/1:1,46:32:47:0.979:2	0/1:18,10:32:28:0.357:2	0/1:1,47:30:48:0.979:2
chr3	49459637	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,4:31:102:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr3	49548008	rs2131107	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:33:41:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,126:33:126:1.00:2	0/1:0,70:33:70:1.00:2	0/1:0,69:33:69:1.00:2	0/1:0,56:33:56:1.00:2
chr3	49548226	rs116717961	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,30:33:73:0.411:2	./.	./.
chr3	49570140	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:30:102:0.039:2	./.	./.	./.	./.
chr3	49570200	rs1801143	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,24:30:59:0.407:2	0/1:23,22:31:45:0.489:2	0/1:5,3:30:8:0.375:2	0/1:51,62:30:113:0.549:2	0/1:1,109:30:110:0.991:2	0/1:49,50:29:99:0.505:2	0/1:3,144:30:147:0.980:2	./.	0/1:0,74:31:74:1.00:2	0/1:34,35:30:69:0.507:2	0/1:2,78:30:80:0.975:2
chr3	49689210	rs34762726	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,15:32:39:0.395:2	0/1:14,21:30:35:0.600:2	./.	0/1:23,32:28:56:0.582:2	0/1:1,73:30:76:0.986:2	0/1:19,22:29:44:0.537:2	0/1:0,49:29:50:1.00:2	./.	0/1:1,44:30:46:0.978:2	0/1:13,22:30:35:0.629:2	0/1:1,40:30:41:0.976:2
chr3	49689642	rs150021639	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,37:30:88:0.420:2	./.	./.	./.	./.	0/1:31,30:30:61:0.492:2	0/1:29,30:30:59:0.508:2
chr3	49690199	rs4855885	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,25:31:25:1.00:2	0/1:0,23:32:23:1.00:2	./.	0/1:21,15:30:36:0.417:2	0/1:0,36:31:36:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,17:32:17:1.00:2	0/1:12,14:29:26:0.538:2	0/1:0,25:32:25:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,26:32:26:1.00:2
chr3	49690496	rs11709525	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,24:32:41:0.585:2	0/1:13,9:32:22:0.409:2	./.	0/1:22,36:32:58:0.621:2	0/1:0,103:31:103:1.00:2	0/1:25,45:32:70:0.643:2	0/1:2,85:32:87:0.977:2	./.	0/1:2,81:33:83:0.976:2	0/1:15,14:33:29:0.483:2	0/1:0,63:32:63:1.00:2
chr3	49690627	rs35762866	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,11:29:15:0.733:2	./.	./.	./.
chr3	49692833	rs138243476	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,9:27:26:0.346:2	./.	./.	./.
chr3	49695533	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,4:34:19:0.211:2	./.
chr3	49701298	rs2005557	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,68:31:126:0.540:2	0/1:48,49:31:97:0.505:2	./.	./.	./.	0/1:82,74:30:156:0.474:2	./.	0/1:101,73:30:174:0.420:2	./.	0/1:74,61:30:135:0.452:2	./.
chr3	49701983	rs9858542	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,8:32:16:0.500:2	./.	./.	0/1:10,12:32:22:0.545:2	0/1:0,36:31:36:1.00:2	0/1:7,12:30:19:0.632:2	0/1:0,29:32:29:1.00:2	./.	0/1:0,27:33:27:1.00:2	0/1:8,11:33:19:0.579:2	0/1:0,22:33:22:1.00:2
chr3	49714225	rs1131095	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:86,95:29:181:0.525:2	0/1:63,65:29:128:0.508:2	0/1:14,25:29:39:0.641:2	0/1:96,100:30:196:0.510:2	0/1:0,190:30:190:1.00:2	0/1:101,88:29:189:0.466:2	0/1:3,187:30:190:0.984:2	./.	0/1:2,187:30:189:0.989:2	0/1:82,110:29:192:0.573:2	0/1:0,181:28:182:1.00:2
chr3	49721532	rs3197999	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:94,80:32:174:0.460:2	0/1:73,82:32:155:0.529:2	0/1:13,25:32:38:0.658:2	0/1:100,89:32:189:0.471:2	0/1:100,81:32:181:0.448:2	0/1:111,76:32:187:0.406:2	0/1:2,177:32:179:0.989:2	./.	0/1:16,156:33:172:0.907:2	0/1:98,84:33:182:0.462:2	0/1:4,167:32:171:0.977:2
chr3	49721533	rs201332029	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,12:32:182:0.066:2	./.	./.
chr3	49721561	rs1057319	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:175,8:32:183:0.044:2	0/1:172,4:33:176:0.023:2	./.	0/1:163,21:33:184:0.114:2	./.	0/1:177,7:32:184:0.038:2	./.	./.	0/1:174,20:33:194:0.103:2	./.	0/1:176,10:30:186:0.054:2
chr3	49721606	rs138238101	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:167,6:29:173:0.035:2	./.	./.	./.	./.	0/1:180,7:30:187:0.037:2	./.	./.	./.	./.	./.
chr3	49721622	rs200268600	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:159,14:32:174:0.081:2	0/1:124,6:32:130:0.046:2	./.	./.	./.	./.	./.	0/1:146,10:31:156:0.064:2	0/1:158,8:32:166:0.048:2	0/1:158,18:32:176:0.102:2	./.
chr3	49721798	rs13085791	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,49:32:100:0.490:2	0/1:36,36:32:72:0.500:2	0/1:7,6:32:13:0.462:2	0/1:79,86:32:165:0.521:2	0/1:1,191:31:192:0.995:2	0/1:80,89:31:170:0.527:2	0/1:4,194:31:198:0.980:2	./.	0/1:1,184:32:185:0.995:2	0/1:96,73:31:171:0.432:2	0/1:2,146:32:148:0.986:2
chr3	49722303	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,6:31:117:0.051:2	./.	./.	./.	./.	./.
chr3	49722464	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,8:28:72:0.111:2	./.	./.	./.	./.	./.
chr3	49722492	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,5:29:78:0.064:2	./.	./.
chr3	49722502	.	C	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:62,10:30:72:0.139:2	0/1:23,4:30:27:0.148:2	./.	./.	0/1:78,6:30:84:0.071:2	0/1:41,9:32:50:0.180:2	0/1:70,10:26:80:0.125:2	0/1:60,12:29:72:0.167:2	./.	0/1:55,12:28:67:0.179:2	./.
chr3	49722702	rs71262351	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,3:33:52:0.058:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,5:32:82:0.062:2
chr3	49722743	rs3882325	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,7:31:109:0.065:2	./.	./.	./.	./.	./.	./.	./.
chr3	49722763	rs3882323	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,6:30:103:0.058:2	./.	./.	./.	./.	./.	./.	./.
chr3	49722902	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,6:32:189:0.032:2	./.	./.	./.	./.
chr3	49723115	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:33:114:0.035:2
chr3	49723296	rs2087733	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,3:31:14:0.214:2	0/1:18,3:29:21:0.143:2	./.	0/1:15,3:33:18:0.167:2	./.
chr3	49723750	rs71324987	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,30:26:78:0.385:2	./.	0/1:51,18:25:69:0.261:2	./.	0/1:46,24:28:70:0.343:2	0/1:27,14:27:41:0.341:2	0/1:38,11:27:49:0.224:2
chr3	49723784	rs9713651	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,22:31:81:0.272:2	0/1:34,22:31:56:0.393:2	./.	./.	./.	0/1:55,76:30:131:0.580:2	./.	0/1:109,74:31:183:0.404:2	./.	0/1:48,41:32:89:0.461:2	./.
chr3	49723823	rs7431215	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:100,34:27:134:0.254:2	0/1:64,19:27:83:0.229:2	0/1:14,14:29:28:0.500:2	0/1:178,12:29:190:0.063:2	0/1:172,22:28:194:0.113:2	./.	0/1:175,12:29:187:0.064:2	0/1:164,23:29:187:0.123:2	0/1:164,11:30:175:0.063:2	0/1:140,24:27:164:0.146:2	0/1:131,37:26:168:0.220:2
chr3	49723881	rs6777426	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:121,10:33:131:0.076:2	0/1:75,7:33:82:0.085:2	./.	./.	0/1:137,4:33:141:0.028:2	0/1:119,5:33:124:0.040:2	./.	0/1:155,7:32:162:0.043:2	0/1:115,6:32:121:0.050:2	./.	0/1:137,6:32:143:0.042:2
chr3	49724139	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:166,5:29:171:0.029:2	./.	./.	./.	./.	0/1:180,5:33:185:0.027:2	./.	./.
chr3	49724172	rs41291698	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:141,15:32:156:0.096:2	0/1:90,10:31:100:0.100:2	./.	0/1:171,24:31:195:0.123:2	0/1:182,12:31:194:0.062:2	0/1:146,13:30:159:0.082:2	./.	0/1:182,13:31:195:0.067:2	0/1:170,17:31:187:0.091:2	./.	0/1:172,14:31:186:0.075:2
chr3	49724181	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:178,10:33:188:0.053:2	./.	./.	./.	./.	./.	./.
chr3	49724183	rs201944579	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:104,45:31:150:0.302:2	0/1:69,29:32:98:0.296:2	0/1:17,5:32:22:0.227:2	0/1:172,18:31:190:0.095:2	0/1:146,41:32:187:0.219:2	0/1:131,26:32:157:0.166:2	0/1:148,41:32:189:0.217:2	0/1:137,37:31:174:0.213:2	0/1:162,17:33:181:0.095:2	0/1:144,36:32:180:0.200:2	0/1:147,38:31:185:0.205:2
chr3	49724197	rs200307945	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:104,39:31:143:0.273:2	0/1:68,28:30:96:0.292:2	0/1:15,6:32:21:0.286:2	0/1:157,13:32:170:0.076:2	0/1:125,35:31:160:0.219:2	0/1:140,22:29:162:0.136:2	0/1:148,29:33:177:0.164:2	0/1:126,29:31:155:0.187:2	0/1:152,25:32:177:0.141:2	0/1:143,28:31:171:0.164:2	0/1:144,30:31:174:0.172:2
chr3	49724808	rs3020779	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,111:30:111:1.00:2	0/1:0,82:29:82:1.00:2	0/1:10,16:31:26:0.615:2	0/1:94,79:30:173:0.457:2	0/1:0,130:29:130:1.00:2	0/1:1,162:29:163:0.994:2	0/1:1,164:29:165:0.994:2	0/1:97,77:29:174:0.443:2	0/1:0,179:30:179:1.00:2	0/1:1,126:29:127:0.992:2	0/1:0,127:29:127:1.00:2
chr3	49725021	rs114429531	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:125,11:26:137:0.081:2	0/1:67,5:31:72:0.069:2	./.	./.	./.	./.	./.	./.	./.	0/1:153,7:29:161:0.044:2	0/1:135,6:27:142:0.043:2
chr3	49725034	rs142964215	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:137,12:30:149:0.081:2	0/1:68,9:33:77:0.117:2	./.	./.	./.	0/1:178,5:30:183:0.027:2	0/1:172,6:33:178:0.034:2	0/1:171,5:32:176:0.028:2	./.	0/1:161,8:29:169:0.047:2	0/1:149,8:30:158:0.051:2
chr3	49725038	.	G	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:137,13:28:150:0.087:2	0/1:69,9:29:78:0.115:2	./.	./.	./.	./.	0/1:174,5:27:179:0.028:2	./.	./.	0/1:163,9:26:172:0.052:2	0/1:149,8:28:157:0.051:2
chr3	49725086	rs201833731	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,6:29:113:0.053:2	0/1:45,4:31:49:0.082:2	./.	./.	./.	0/1:138,4:30:143:0.028:2	0/1:102,4:31:106:0.038:2	./.	./.	./.	0/1:97,7:30:104:0.067:2
chr3	49725254	rs113355022	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,7:31:123:0.057:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,5:32:145:0.034:2
chr3	49725302	rs75976238	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,8:32:134:0.060:2	0/1:87,5:31:92:0.054:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,11:32:169:0.065:2
chr3	49725326	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:33:156:0.026:2
chr3	49726028	rs62262685	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:112,83:32:195:0.426:2	0/1:65,39:32:104:0.375:2	0/1:15,9:32:24:0.375:2	0/1:172,5:28:177:0.028:2	0/1:140,40:31:180:0.222:2	0/1:134,42:32:176:0.239:2	0/1:111,85:32:196:0.434:2	0/1:124,69:32:193:0.358:2	0/1:121,67:34:188:0.356:2	0/1:97,100:33:197:0.508:2	0/1:118,77:32:195:0.395:2
chr3	49726070	rs62262686	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:112,51:32:163:0.313:2	0/1:84,26:33:110:0.236:2	0/1:24,8:31:32:0.250:2	./.	0/1:148,36:30:184:0.196:2	0/1:155,30:31:185:0.162:2	0/1:122,65:32:187:0.348:2	0/1:159,27:32:186:0.145:2	0/1:162,18:32:180:0.100:2	0/1:92,77:33:169:0.456:2	0/1:113,61:32:175:0.351:2
chr3	49735541	rs74470696	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,14:12:114:0.123:2	./.	./.	./.	./.	./.	./.
chr3	49736172	rs11130216	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,18:30:39:0.474:2	0/1:13,9:31:22:0.409:2	./.	./.	./.	0/1:35,34:30:69:0.493:2	./.	./.	./.	0/1:28,29:29:57:0.509:2	./.
chr3	49737954	rs35620248	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:104,41:31:147:0.283:2	./.	0/1:102,71:32:173:0.410:2	./.	0/1:63,68:34:131:0.519:2	0/1:72,47:32:119:0.395:2	0/1:85,78:32:163:0.479:2
chr3	49738945	rs6804655	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,19:31:39:0.487:2	0/1:26,6:31:32:0.188:2	./.	./.	./.	0/1:40,33:30:73:0.452:2	./.	./.	./.	0/1:46,24:31:70:0.343:2	./.
chr3	49739287	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,50:31:88:0.568:2	./.	./.	./.	./.	./.	./.
chr3	49739507	rs1491985	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:32:44:1.00:2	0/1:0,33:33:33:1.00:2	0/1:4,3:32:7:0.429:2	0/1:40,43:32:83:0.518:2	0/1:0,81:31:81:1.00:2	0/1:1,78:31:79:0.987:2	0/1:0,64:31:64:1.00:2	0/1:48,46:32:95:0.489:2	0/1:0,97:33:97:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,71:32:71:1.00:2
chr3	49749976	rs34823813	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,34:31:81:0.420:2	0/1:32,35:31:67:0.522:2	./.	./.	./.	0/1:84,73:31:158:0.465:2	0/1:101,93:31:194:0.479:2	./.	0/1:73,66:31:139:0.475:2	0/1:130,4:31:134:0.030:2	0/1:53,58:31:111:0.523:2
chr3	49751585	rs2291542	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,26:32:47:0.553:2	0/1:16,18:31:34:0.529:2	./.	./.	./.	0/1:34,65:30:99:0.657:2	./.	./.	./.	0/1:29,30:31:59:0.508:2	./.
chr3	49756356	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:33:142:0.028:2	./.	./.
chr3	49757008	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,56:31:136:0.412:2	./.	./.	./.	./.	./.	./.
chr3	49757993	rs372750601	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,29:31:45:0.644:2	./.	./.	./.	./.	./.
chr3	49758695	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:153,4:31:157:0.025:2	./.	./.	./.	./.	./.	./.
chr3	49759952	rs183240200	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,75:32:180:0.417:2	./.	./.
chr3	49760039	rs1466685	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:28:82:1.00:2	0/1:0,46:27:46:1.00:2	0/1:0,19:29:19:1.00:2	0/1:0,138:29:138:1.00:2	0/1:0,168:29:168:1.00:2	0/1:0,170:29:170:1.00:2	0/1:0,179:29:179:1.00:2	0/1:0,186:29:186:1.00:2	0/1:2,167:30:169:0.988:2	0/1:0,139:30:139:1.00:2	0/1:0,104:28:104:1.00:2
chr3	49785263	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,5:30:104:0.048:2
chr3	49829326	rs62260715	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,29:32:66:0.439:2	0/1:16,15:32:31:0.484:2	./.	./.	./.	0/1:41,34:32:75:0.453:2	./.	./.	./.	0/1:27,31:32:58:0.534:2	./.
chr3	49830032	rs61745903	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,70:32:148:0.473:2	./.	0/1:77,46:31:123:0.374:2	./.	0/1:37,50:32:87:0.575:2	0/1:32,32:33:65:0.500:2	0/1:50,33:32:83:0.398:2
chr3	49832788	rs73079003	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.	0/1:70,68:31:138:0.493:2	./.	./.	./.	./.	./.	./.
chr3	49833154	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,59:31:120:0.492:2	./.	./.	./.	./.	./.	./.	./.
chr3	49836707	rs7629936	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,69:32:157:0.439:2	0/1:41,45:32:86:0.523:2	./.	./.	./.	0/1:105,88:30:193:0.456:2	./.	./.	./.	0/1:76,87:32:163:0.534:2	./.
chr3	49837240	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:29:52:0.077:2	./.	./.	./.	./.	./.
chr3	49842272	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,4:27:30:0.133:2	0/1:29,8:26:37:0.216:2	0/1:21,7:28:28:0.250:2	0/1:27,6:24:33:0.182:2	./.	./.	0/1:15,3:28:18:0.167:2	./.
chr3	49845229	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:32:145:0.028:2
chr3	49866584	rs35129566	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,13:31:35:0.371:2	0/1:107,82:30:189:0.434:2	./.	./.	./.	0/1:118,76:29:194:0.392:2	./.	./.	./.
chr3	49881975	rs200749327	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:30:13:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	49896952	rs202053348	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,8:18:88:0.091:2
chr3	49898273	rs2681781	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:50,46:31:96:0.479:2	0/1:25,18:30:43:0.419:2	./.	0/1:0,84:32:85:1.00:2	./.	0/1:49,42:32:91:0.462:2	./.	0/1:3,126:31:129:0.977:2	0/1:48,39:31:87:0.448:2	0/1:38,47:32:85:0.553:2	./.
chr3	49899533	rs200718388	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,70:33:137:0.511:2	./.	./.
chr3	49899576	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:139,4:30:144:0.028:2	./.	./.	./.	./.	./.	./.
chr3	49899795	rs3796386	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,56:31:107:0.528:2	0/1:32,19:31:51:0.373:2	0/1:12,3:29:15:0.200:2	0/1:2,117:30:119:0.983:2	./.	0/1:81,67:30:148:0.453:2	./.	0/1:1,150:30:152:0.993:2	0/1:95,67:31:163:0.414:2	0/1:88,43:30:131:0.328:2	./.
chr3	49924916	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	49924940	rs1062633	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:36,37:30:73:0.507:2	0/1:18,26:28:44:0.591:2	./.	0/1:0,94:28:94:1.00:2	./.	0/1:59,49:28:108:0.454:2	./.	0/1:3,96:28:99:0.970:2	0/1:52,50:29:103:0.490:2	0/1:50,42:30:92:0.457:2	./.
chr3	49928691	rs7433231	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:30:54:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,112:30:112:1.00:2	0/1:0,149:29:149:1.00:2	0/1:0,88:29:88:1.00:2	0/1:0,150:30:150:1.00:2	0/1:0,124:29:124:1.00:2	0/1:0,96:30:96:1.00:2	0/1:0,57:29:57:1.00:2	0/1:0,91:30:91:1.00:2
chr3	49933211	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,4:32:37:0.108:2
chr3	49936102	rs2230590	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:16,18:28:34:0.529:2	0/1:15,12:28:27:0.444:2	./.	0/1:0,47:28:47:1.00:2	./.	0/1:34,21:29:55:0.382:2	./.	0/1:0,59:28:59:1.00:2	0/1:22,18:28:40:0.450:2	0/1:20,17:29:37:0.459:2	./.
chr3	49940078	rs2230593	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,26:31:66:0.394:2	./.	./.	./.	./.	./.	./.	./.
chr3	49940820	rs35887539	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,36:32:75:0.480:2	./.	./.	./.	./.	./.
chr3	49947700	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,6:31:47:0.128:2	./.
chr3	49949071	rs868891	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:37,28:30:65:0.431:2	0/1:24,23:29:47:0.489:2	0/1:4,11:31:15:0.733:2	./.	./.	0/1:67,46:29:113:0.407:2	./.	0/1:2,106:30:108:0.981:2	0/1:39,42:30:81:0.519:2	0/1:40,36:30:76:0.474:2	./.
chr3	49967161	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:32:8:0.500:2	./.	./.	./.	./.	./.
chr3	50095213	rs147018443	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,14:32:28:0.500:2	./.	./.	./.	./.	./.
chr3	50103917	rs2023953	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:32:12:0.364:2	0/1:6,4:31:10:0.400:2	./.	./.	./.	0/1:10,10:31:20:0.500:2	0/1:6,7:32:13:0.538:2	./.	0/1:24,12:32:36:0.333:2	./.	0/1:11,12:32:23:0.522:2
chr3	50114515	rs7061	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,30:31:47:0.638:2	0/1:16,9:32:25:0.360:2	./.	./.	0/1:0,53:31:53:1.00:2	0/1:29,35:31:64:0.547:2	0/1:0,79:31:79:1.00:2	./.	0/1:31,32:32:63:0.508:2	0/1:16,16:32:32:0.500:2	0/1:0,79:32:79:1.00:2
chr3	50144951	rs1061474	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:65,75:33:140:0.536:2	0/1:49,42:32:91:0.462:2	0/1:10,10:33:20:0.500:2	./.	0/1:0,174:32:174:1.00:2	0/1:100,92:32:192:0.479:2	0/1:0,189:32:189:1.00:2	./.	0/1:91,102:34:193:0.528:2	0/1:76,100:32:176:0.568:2	0/1:0,176:33:176:1.00:2
chr3	50147061	rs116604207	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:33:118:0.034:2	./.
chr3	50153356	rs1138536	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:36,34:32:70:0.486:2	0/1:28,11:32:39:0.282:2	0/1:7,5:31:12:0.417:2	./.	0/1:0,92:31:92:1.00:2	0/1:45,58:33:103:0.563:2	0/1:0,101:32:101:1.00:2	./.	0/1:42,61:33:103:0.592:2	0/1:68,36:32:104:0.346:2	0/1:0,87:32:87:1.00:2
chr3	50197097	rs1046953	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,20:32:29:0.690:2	0/1:13,7:32:20:0.350:2	./.	./.	0/1:0,32:31:32:1.00:2	0/1:27,14:31:41:0.341:2	0/1:0,36:32:36:1.00:2	./.	0/1:22,18:33:40:0.450:2	0/1:12,11:33:23:0.478:2	0/1:0,38:31:38:1.00:2
chr3	50211768	rs146091236	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,56:32:86:0.651:2	./.	./.
chr3	50220896	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:32:76:0.053:2	./.	./.	./.	./.	./.
chr3	50222926	rs1046956	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:78,103:31:181:0.569:2	0/1:55,43:31:98:0.439:2	0/1:12,12:29:24:0.500:2	./.	0/1:0,183:31:183:1.00:2	0/1:100,81:31:182:0.448:2	0/1:0,186:31:186:1.00:2	./.	0/1:93,79:32:172:0.459:2	0/1:88,105:31:195:0.544:2	0/1:0,183:31:183:1.00:2
chr3	50225389	rs140809943	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,7:31:17:0.412:2	./.	./.	./.	./.	./.
chr3	50257389	rs35742391	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,51:30:105:0.486:2	./.	0/1:41,49:30:91:0.544:2	./.	./.	./.	./.	./.
chr3	50289955	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,3:33:53:0.057:2	./.	./.
chr3	50329826	rs1076872	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,2:29:2:1.00:2	./.	./.	0/1:0,4:29:4:1.00:2	./.	0/1:0,3:29:3:1.00:2	./.	./.	./.	./.	./.
chr3	50332697	rs13100173	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,38:30:39:0.974:2	0/1:0,15:31:15:1.00:2	./.	0/1:33,15:29:48:0.313:2	0/1:31,34:30:65:0.523:2	0/1:31,21:29:52:0.404:2	0/1:3,60:31:63:0.952:2	0/1:0,46:30:46:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,27:30:27:1.00:2
chr3	50334231	rs2269432	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,3:33:54:0.056:2	./.	./.	./.
chr3	50334462	rs201512291	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,4:30:5:0.800:2	./.	./.	./.	./.	./.	./.
chr3	50336650	rs188359638	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,82:32:185:0.443:2	./.	./.	./.	./.	./.	./.
chr3	50357869	rs709210	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:31:50:1.00:2	0/1:0,32:31:32:1.00:2	0/1:2,4:32:6:0.667:2	0/1:0,57:32:57:1.00:2	0/1:43,38:31:81:0.469:2	0/1:0,60:31:60:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,40:30:40:1.00:2	0/1:0,29:30:29:1.00:2
chr3	50368063	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:34:94:0.043:2	./.	./.	./.	./.	./.
chr3	50375431	.	T	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,4:23:21:0.190:2	./.	./.	0/1:23,12:23:35:0.343:2	0/1:44,12:19:56:0.214:2	0/1:31,13:21:44:0.295:2	0/1:34,13:20:47:0.277:2	0/1:47,11:22:58:0.190:2	0/1:41,9:20:50:0.180:2	0/1:20,6:28:26:0.231:2	./.
chr3	50385967	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:30:118:0.034:2	./.
chr3	50403283	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2	./.	./.	./.	./.
chr3	50403308	rs149761786	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,41:32:89:0.461:2
chr3	50412233	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,12:13:102:0.118:2	./.	0/1:83,14:16:97:0.144:2	./.	./.	./.	./.	./.
chr3	50418438	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:31:108:0.037:2	./.	./.	./.	./.
chr3	50418493	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:31:102:0.039:2	./.	./.	./.	./.
chr3	50418547	rs56287038	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,18:30:43:0.419:2	./.	0/1:22,16:29:38:0.421:2	./.	./.	./.	./.	./.
chr3	50431532	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,5:33:170:0.029:2	./.	./.
chr3	50513613	rs41291734	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,12:33:16:0.750:2	./.	./.	./.	./.	./.	./.	./.
chr3	50597092	rs1034405	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:32:75:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,11:32:11:1.00:2	0/1:79,76:31:155:0.490:2	0/1:1,140:31:141:0.993:2	0/1:0,124:31:124:1.00:2	0/1:0,160:32:160:1.00:2	0/1:1,139:32:140:0.993:2	0/1:2,114:32:116:0.983:2	0/1:0,105:32:105:1.00:2	0/1:2,115:32:117:0.983:2
chr3	50598396	rs41291736	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,70:30:143:0.490:2	./.	./.	./.	0/1:0,173:30:173:1.00:2	0/1:77,75:30:152:0.493:2	./.	./.
chr3	50599167	rs142695114	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,32:30:81:0.395:2	./.	./.	./.	./.	./.	./.	./.
chr3	50609624	rs2232248	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:31:27:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,40:30:40:1.00:2	0/1:2,56:31:58:0.966:2	0/1:0,76:31:76:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,34:30:34:1.00:2
chr3	50614990	rs2232251	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,72:33:158:0.456:2	./.	./.	./.	./.	./.	./.	./.
chr3	51273773	rs1480361	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,118:33:118:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,12:34:12:1.00:2	0/1:0,173:33:173:1.00:2	0/1:0,85:32:85:1.00:2	0/1:1,157:32:158:0.994:2	0/1:0,88:33:88:1.00:2	0/1:0,162:33:162:1.00:2	0/1:0,170:34:170:1.00:2	0/1:0,117:33:117:1.00:2	0/1:0,172:33:172:1.00:2
chr3	51418572	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:118,4:32:122:0.033:2	./.	./.	./.	./.	./.	./.
chr3	51422766	rs13091931	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,4:31:4:1.00:2	./.	0/1:0,2:29:2:1.00:2	0/1:0,2:29:2:1.00:2	./.	./.	0/1:0,4:26:4:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,2:32:2:1.00:2	./.	0/1:0,3:32:3:1.00:2
chr3	51430657	rs3804766	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,38:32:85:0.452:2	./.	./.	./.	./.	./.	./.	./.
chr3	51432277	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,56:28:118:0.475:2	./.	./.	./.	./.	./.	./.	./.
chr3	51432847	rs57831708	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,19:32:47:0.404:2	./.	./.	./.	./.	./.	./.	./.
chr3	51432895	rs4687569	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:30:37:1.00:2	0/1:0,24:29:24:1.00:2	0/1:0,4:23:4:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,52:28:52:1.00:2	0/1:32,34:30:66:0.515:2	0/1:0,58:30:58:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,27:30:27:1.00:2
chr3	51433316	rs143050198	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,47:32:85:0.553:2	./.	./.	./.	./.	./.	./.	./.
chr3	51434215	rs12637997	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,36:28:79:0.456:2	./.	./.	./.	./.	./.	./.
chr3	51435015	rs184709119	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,27:30:56:0.482:2	./.	./.	./.	./.
chr3	51436240	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:31:45:0.089:2	./.	./.	./.
chr3	51458279	rs112510197	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,48:32:105:0.457:2	./.	./.	./.	./.	./.
chr3	51475059	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:33:183:0.022:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	51661631	rs186743098	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,77:31:132:0.583:2	./.	./.	./.	./.	./.	./.	./.
chr3	51708450	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,4:33:90:0.044:2	./.	./.	./.	./.	./.	./.	./.
chr3	51718612	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,12:13:97:0.124:2
chr3	51737965	rs11553574	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:32:15:0.533:2	./.	./.	./.	./.	./.	./.	./.
chr3	51747111	rs148285622	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,24:30:42:0.571:2	./.	./.	./.
chr3	51749874	rs61729078	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,19:31:43:0.442:2	./.	./.
chr3	51749936	rs372842577	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,13:10:50:0.260:2	./.	./.	./.
chr3	51751760	rs61729076	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,76:31:170:0.447:2	./.	./.	./.	./.	./.	./.	./.
chr3	51812952	rs11130296	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,29:33:63:0.460:2	0/1:16,20:32:36:0.556:2	./.	./.	./.	0/1:42,58:31:100:0.580:2	./.	./.	./.	0/1:38,40:32:78:0.513:2	./.
chr3	51897334	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:32:60:0.067:2
chr3	51929096	rs114559032	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,61:30:150:0.407:2	./.	./.	./.
chr3	51929183	rs11927897	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,44:32:120:0.367:2	./.	./.	./.
chr3	51930850	rs57859638	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:33:9:0.333:2	./.	0/1:52,47:32:99:0.475:2	./.	./.	./.	./.	0/1:42,52:33:94:0.553:2	0/1:0,102:33:102:1.00:2
chr3	51969477	rs371007122	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,22:32:52:0.423:2	./.	./.	./.
chr3	51978220	rs28547534	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:31:65:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,88:31:88:1.00:2	0/1:1,125:30:126:0.992:2	0/1:1,95:29:96:0.990:2	0/1:0,111:30:111:1.00:2	0/1:0,120:31:120:1.00:2	0/1:0,68:31:68:1.00:2	0/1:0,82:31:82:1.00:2	0/1:0,79:30:80:1.00:2
chr3	51978483	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:32:73:0.055:2	./.	./.	./.	./.	./.
chr3	51990646	rs73082754	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,6:26:21:0.286:2	0/1:4,6:30:10:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	51990847	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,6:32:118:0.051:2	./.	./.	./.
chr3	51990930	rs13068631	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:2,75:29:77:0.974:2	0/1:3,24:28:27:0.889:2	0/1:8,8:30:16:0.500:2	./.	./.	0/1:1,66:29:67:0.985:2	0/1:0,100:29:100:1.00:2	0/1:44,61:30:105:0.581:2	./.	./.	0/1:43,43:30:86:0.500:2
chr3	51992204	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:33:107:0.037:2
chr3	52004142	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:34:76:0.053:2	./.	./.
chr3	52005529	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:182,4:32:186:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr3	52011912	rs17849626	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,33:33:50:0.660:2	./.	./.
chr3	52012320	rs41292350	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,21:32:53:0.396:2	0/1:14,16:31:30:0.533:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	52014588	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,5:29:94:0.053:2	./.	./.	./.	./.	./.	./.	./.
chr3	52014907	rs34149506	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,8:26:35:0.229:2	./.
chr3	52097483	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,4:30:67:0.060:2	./.	./.	./.	./.	./.	./.
chr3	52237970	rs352168	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,27:32:43:0.628:2	0/1:8,17:30:25:0.680:2	0/1:6,3:31:9:0.333:2	0/1:24,24:30:48:0.500:2	0/1:22,10:29:32:0.313:2	./.	0/1:32,13:31:45:0.289:2	0/1:0,42:31:42:1.00:2	0/1:36,27:31:63:0.429:2	0/1:0,30:31:30:1.00:2	0/1:30,33:31:63:0.524:2
chr3	52239996	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:32:172:0.023:2	./.	./.
chr3	52240611	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:33:188:0.021:2	./.	./.
chr3	52246348	rs142835980	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,17:30:47:0.362:2
chr3	52256697	rs352140	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:40,47:31:87:0.540:2	0/1:21,16:32:37:0.432:2	./.	0/1:40,63:31:103:0.612:2	0/1:89,74:31:163:0.454:2	./.	0/1:73,63:32:137:0.463:2	0/1:3,138:32:141:0.979:2	0/1:57,38:32:95:0.400:2	0/1:1,79:31:80:0.988:2	0/1:39,44:31:83:0.530:2
chr3	52263967	rs34038856	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,12:28:27:0.444:2	./.
chr3	52264907	rs352143	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:106,74:33:180:0.411:2	./.	0/1:110,74:33:184:0.402:2	0/1:110,67:33:177:0.379:2	./.	0/1:65,41:33:106:0.387:2	./.
chr3	52265215	rs164637	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,67:31:132:0.508:2	./.	./.	./.
chr3	52282458	rs116696868	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,5:33:13:0.385:2	./.	./.	./.	./.	./.	./.
chr3	52283049	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:32:117:0.034:2
chr3	52283355	rs148787366	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,35:32:86:0.407:2	./.	./.	./.	./.	./.	./.	./.
chr3	52283758	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:33:147:0.027:2	./.	./.	./.	./.	./.
chr3	52293859	rs3210487	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,25:30:64:0.391:2	./.	0/1:30,29:30:59:0.492:2	./.	./.	./.	./.
chr3	52325039	rs35976326	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,72:31:132:0.545:2	./.	0/1:65,68:32:133:0.511:2	./.	./.	./.	./.
chr3	52325106	rs35130772	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,31:31:80:0.388:2	./.	./.	./.
chr3	52357847	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:31:82:0.049:2	./.
chr3	52360273	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,7:33:20:0.350:2	0/1:7,3:33:10:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	52378540	rs13060192	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,67:32:138:0.486:2	./.	./.	./.
chr3	52383340	rs35982798	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,74:32:185:0.400:2	./.	./.	./.
chr3	52384609	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:30:62:0.065:2	./.
chr3	52386615	rs149114984	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,98:31:196:0.500:2	./.	./.	./.	./.	./.	./.
chr3	52386711	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:31:151:0.026:2	./.	./.	./.	./.	./.
chr3	52390789	rs61734640	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,46:32:98:0.469:2	./.	./.	./.
chr3	52391735	rs11714402	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,38:28:111:0.342:2	./.	0/1:73,39:26:112:0.348:2	0/1:57,46:27:103:0.447:2	./.	./.	./.
chr3	52392672	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:168,4:32:172:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr3	52392706	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:179,4:32:183:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr3	52394055	rs61734638	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,51:32:95:0.537:2	./.
chr3	52400767	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:31:126:0.032:2	./.
chr3	52403861	rs201198770	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,82:32:156:0.526:2	./.	./.	./.	./.	./.
chr3	52407041	rs1546737	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,23:32:43:0.535:2	0/1:11,12:32:23:0.522:2	0/1:3,4:31:7:0.571:2	0/1:50,37:31:87:0.425:2	./.	./.	./.	0/1:63,34:32:97:0.351:2	0/1:42,32:31:74:0.432:2	./.	0/1:0,43:31:43:1.00:2
chr3	52409421	rs56002041	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,17:32:49:0.347:2	./.	0/1:25,37:32:62:0.597:2	./.	./.	./.	./.
chr3	52418888	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,4:31:84:0.048:2	./.	./.	./.	./.	./.	./.	./.
chr3	52420315	rs182141515	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,77:31:154:0.500:2	./.	./.	./.	./.	./.	./.
chr3	52426884	rs419050	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,64:30:164:0.390:2	./.	./.	./.
chr3	52426885	rs376059846	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,57:30:123:0.463:2	./.	./.	./.	./.	./.
chr3	52428988	rs11708581	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:110,88:29:198:0.444:2	./.	0/1:100,88:29:188:0.468:2	./.	./.	./.	./.
chr3	52429011	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,73:33:165:0.442:2	./.
chr3	52429665	rs419752	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,57:31:146:0.390:2	./.	./.	./.
chr3	52430526	rs12163565	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:28,16:31:44:0.364:2	0/1:15,8:32:23:0.348:2	0/1:7,4:31:11:0.364:2	./.	0/1:59,42:30:101:0.416:2	0/1:52,39:30:91:0.429:2	0/1:101,43:30:144:0.299:2	./.	./.	./.	./.
chr3	52430698	rs365048	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:29:41:1.00:2	0/1:0,21:28:21:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,51:29:51:1.00:2	0/1:0,52:29:52:1.00:2	0/1:0,49:29:49:1.00:2	0/1:0,66:29:66:1.00:2	0/1:0,52:29:52:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,45:29:45:1.00:2	0/1:0,58:27:58:1.00:2
chr3	52437739	rs199888129	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,34:30:73:0.466:2	0/1:23,25:31:48:0.521:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	52439216	rs71651686	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,41:31:66:0.621:2	./.
chr3	52453893	rs498778	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,107:31:108:0.991:2	0/1:0,73:31:74:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,112:30:113:1.00:2	0/1:0,66:29:66:1.00:2	0/1:0,95:30:95:1.00:2	0/1:1,72:30:73:0.986:2	0/1:46,76:30:122:0.623:2	0/1:0,119:31:119:1.00:2	0/1:0,104:30:104:1.00:2	0/1:0,144:30:145:1.00:2
chr3	52475299	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:31:125:0.032:2	./.	./.	./.
chr3	52492707	rs1541495	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,99:32:99:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,85:31:85:1.00:2	0/1:0,73:32:73:1.00:2	0/1:47,50:31:97:0.515:2	0/1:0,92:33:92:1.00:2	0/1:0,93:32:93:1.00:2	0/1:2,127:32:131:0.984:2
chr3	52507782	rs56114678	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,15:32:32:0.469:2	./.
chr3	52510592	rs9856575	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:31:76:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,92:30:92:1.00:2	0/1:0,110:30:110:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,106:31:106:1.00:2	0/1:0,78:31:78:1.00:2	0/1:1,67:30:68:0.985:2	0/1:0,83:31:83:1.00:2
chr3	52512123	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,78:33:150:0.520:2	./.	./.	./.	./.
chr3	52514271	rs71297399	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,81:32:180:0.450:2	./.	./.	./.
chr3	52519854	rs17263770	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,71:27:140:0.507:2	./.	0/1:84,73:28:157:0.465:2	./.	./.	./.	./.
chr3	52521380	rs61737029	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,11:28:25:0.440:2
chr3	52521959	rs138392739	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,30:29:73:0.411:2	./.	./.	./.	./.	./.	./.
chr3	52522091	rs77768459	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,38:29:68:0.559:2	./.	./.	./.	./.	./.	./.
chr3	52522555	rs142618964	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,33:30:63:0.524:2	./.	./.	./.	./.	./.	./.	./.
chr3	52523405	rs887515	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:31:31:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,2:30:2:1.00:2	0/1:1,37:31:38:0.974:2	0/1:8,16:30:24:0.667:2	0/1:0,45:31:46:1.00:2	0/1:9,10:31:19:0.526:2	0/1:10,15:31:25:0.600:2	0/1:0,26:31:26:1.00:2	0/1:0,31:30:31:1.00:2	0/1:12,6:31:18:0.333:2
chr3	52537109	rs112337417	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,34:32:57:0.596:2	./.	./.	./.	./.	./.	0/1:31,21:32:52:0.404:2	./.
chr3	52540773	rs1010553	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:38,22:31:60:0.367:2	0/1:32,16:31:48:0.333:2	0/1:5,3:32:8:0.375:2	./.	0/1:79,56:30:136:0.415:2	0/1:1,106:31:107:0.991:2	0/1:62,40:30:102:0.392:2	./.	0/1:50,36:32:86:0.419:2	0/1:65,37:29:102:0.363:2	./.
chr3	52544470	rs9835659	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,91:28:91:1.00:2	0/1:0,50:28:50:1.00:2	0/1:0,16:28:16:1.00:2	0/1:0,113:29:113:1.00:2	0/1:0,167:30:167:1.00:2	0/1:0,129:29:129:1.00:2	0/1:0,157:29:157:1.00:2	0/1:0,162:29:162:1.00:2	0/1:0,140:30:140:1.00:2	0/1:0,122:29:122:1.00:2	0/1:0,78:29:78:1.00:2
chr3	52548818	rs740903	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,20:31:35:0.571:2	./.	./.
chr3	52551010	rs79979130	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,78:31:191:0.408:2	./.	./.	./.
chr3	52551935	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,46:29:122:0.377:2	./.	./.	./.	./.
chr3	52554304	rs7630214	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:32:54:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,88:32:88:1.00:2	0/1:59,37:32:96:0.385:2	0/1:0,54:32:54:1.00:2	0/1:0,80:31:80:1.00:2
chr3	52554735	rs147428795	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,7:27:25:0.280:2
chr3	52554942	rs116505916	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:30:61:0.066:2	./.	./.	./.
chr3	52555957	rs9853056	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,44:30:81:0.543:2	0/1:31,23:28:54:0.426:2	0/1:3,3:31:6:0.500:2	0/1:3,103:30:106:0.972:2	0/1:79,73:30:152:0.480:2	./.	0/1:3,127:30:130:0.977:2	0/1:1,140:30:141:0.993:2	0/1:56,49:30:106:0.467:2	0/1:38,29:30:67:0.433:2	0/1:0,62:29:62:1.00:2
chr3	52556369	rs35325270	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,60:31:117:0.513:2	0/1:56,45:30:101:0.446:2	./.	./.	./.
chr3	52556890	rs4434138	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,68:29:134:0.507:2	0/1:69,47:29:116:0.405:2	0/1:15,13:30:28:0.464:2	0/1:3,179:30:182:0.984:2	0/1:90,103:29:193:0.534:2	./.	0/1:107,77:28:184:0.418:2	0/1:106,76:29:182:0.418:2	0/1:97,89:29:186:0.478:2	0/1:84,76:29:160:0.475:2	0/1:0,174:28:174:1.00:2
chr3	52557445	rs116423614	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,20:33:45:0.444:2	./.	./.
chr3	52558008	rs13303	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,12:29:35:0.343:2	0/1:5,10:30:15:0.667:2	./.	0/1:0,42:29:42:1.00:2	0/1:28,16:28:44:0.364:2	./.	0/1:1,27:30:28:0.964:2	0/1:0,33:29:33:1.00:2	0/1:13,12:30:25:0.480:2	0/1:24,17:29:41:0.415:2	0/1:0,26:29:26:1.00:2
chr3	52558133	rs13621	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:40,25:30:65:0.385:2	0/1:20,17:30:37:0.459:2	./.	0/1:0,91:30:91:1.00:2	0/1:74,58:29:132:0.439:2	./.	0/1:56,52:30:108:0.481:2	0/1:55,67:29:123:0.549:2	0/1:44,55:31:99:0.556:2	0/1:52,37:29:89:0.416:2	0/1:0,85:29:85:1.00:2
chr3	52558904	rs34005367	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,23:31:45:0.511:2	0/1:20,16:29:36:0.444:2	0/1:3,4:30:7:0.571:2	0/1:2,88:31:90:0.978:2	0/1:72,48:30:121:0.400:2	./.	0/1:47,31:31:78:0.397:2	0/1:42,50:31:92:0.543:2	0/1:27,35:32:62:0.565:2	0/1:22,25:31:47:0.532:2	0/1:0,39:31:39:1.00:2
chr3	52561308	rs184500422	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,20:11:127:0.157:2	0/1:87,17:13:104:0.163:2
chr3	52582193	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:131,4:32:135:0.030:2	./.	./.	./.	./.	./.	./.
chr3	52584787	rs2251219	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,23:30:53:0.434:2	0/1:24,6:30:30:0.200:2	0/1:1,4:32:5:0.800:2	0/1:1,72:30:73:0.986:2	./.	./.	./.	0/1:21,38:30:59:0.644:2	0/1:47,30:30:77:0.390:2	0/1:31,21:29:52:0.404:2	0/1:0,78:29:78:1.00:2
chr3	52588874	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:34:97:0.041:2	./.	./.
chr3	52610651	rs17264436	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:23,18:33:41:0.439:2	0/1:12,14:32:26:0.538:2	./.	0/1:0,51:33:51:1.00:2	./.	./.	./.	0/1:34,29:32:63:0.460:2	0/1:40,21:34:61:0.344:2	0/1:43,17:33:60:0.283:2	0/1:0,64:33:64:1.00:2
chr3	52643685	rs3755806	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,59:30:124:0.476:2	0/1:37,29:29:66:0.439:2	0/1:15,16:30:31:0.516:2	0/1:0,162:30:162:1.00:2	./.	./.	./.	0/1:90,99:30:189:0.524:2	0/1:98,99:31:197:0.503:2	0/1:61,46:30:107:0.430:2	0/1:4,179:30:184:0.978:2
chr3	52651343	rs191685069	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,38:32:94:0.404:2	./.	./.	./.	./.	./.	./.	./.
chr3	52676065	rs11719685	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:15,13:27:29:0.464:2	0/1:13,10:29:23:0.435:2	./.	0/1:0,27:28:28:1.00:2	./.	./.	./.	0/1:19,13:23:34:0.406:2	0/1:29,15:24:45:0.341:2	0/1:14,7:25:21:0.333:2	0/1:0,25:25:25:1.00:2
chr3	52720080	rs1108842	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,19:32:48:0.396:2	0/1:30,14:31:44:0.318:2	0/1:5,15:32:20:0.750:2	0/1:0,107:32:107:1.00:2	./.	./.	0/1:96,54:32:150:0.360:2	0/1:1,113:31:114:0.991:2	0/1:68,55:33:123:0.447:2	0/1:37,31:32:68:0.456:2	0/1:1,77:30:78:0.987:2
chr3	52721305	rs11177	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:30,44:32:74:0.595:2	0/1:12,21:32:33:0.636:2	./.	0/1:1,75:32:76:0.987:2	./.	./.	./.	0/1:43,36:33:79:0.456:2	0/1:43,40:33:83:0.482:2	0/1:22,27:33:49:0.551:2	0/1:0,108:32:108:1.00:2
chr3	52727257	rs2289247	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,43:31:89:0.483:2	0/1:22,20:31:42:0.476:2	0/1:7,4:31:11:0.364:2	0/1:2,60:30:62:0.968:2	./.	./.	./.	0/1:46,35:30:81:0.432:2	0/1:49,54:32:103:0.524:2	0/1:29,27:30:56:0.482:2	0/1:0,113:30:113:1.00:2
chr3	52740182	rs6617	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,2:30:2:1.00:2	./.	0/1:0,14:33:14:1.00:2	./.	./.	./.	./.	0/1:5,5:34:10:0.500:2	./.	0/1:0,12:31:12:1.00:2
chr3	52773526	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:33:101:0.040:2	./.	./.	./.	./.	./.
chr3	52780205	rs34986855	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,24:31:55:0.436:2	./.
chr3	52780786	rs147428920	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,60:32:116:0.517:2	0/1:39,32:31:71:0.451:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	52794946	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,3:36:29:0.103:2	./.	./.	./.	./.
chr3	52797634	rs1029871	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:24,12:33:36:0.333:2	0/1:15,14:32:29:0.483:2	./.	0/1:0,38:33:38:1.00:2	./.	./.	./.	0/1:18,18:33:36:0.500:2	0/1:24,20:34:44:0.455:2	0/1:15,5:33:20:0.250:2	0/1:2,43:33:45:0.956:2
chr3	52800284	rs2230535	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:98,83:33:182:0.459:2	0/1:62,52:33:114:0.456:2	0/1:24,19:32:43:0.442:2	0/1:4,160:33:165:0.976:2	./.	./.	./.	0/1:73,88:33:161:0.547:2	0/1:90,68:33:158:0.430:2	0/1:98,66:32:165:0.402:2	0/1:1,166:32:167:0.994:2
chr3	52802402	rs2230534	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,40:30:95:0.421:2	0/1:21,23:30:44:0.523:2	0/1:10,3:31:13:0.231:2	0/1:3,82:30:85:0.965:2	./.	./.	./.	0/1:93,33:30:126:0.262:2	0/1:65,30:30:95:0.316:2	0/1:36,21:31:58:0.368:2	0/1:0,78:30:78:1.00:2
chr3	52820981	rs678	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:51,31:30:83:0.378:2	0/1:33,28:30:62:0.459:2	./.	0/1:0,130:29:132:1.00:2	./.	./.	./.	0/1:111,69:30:181:0.383:2	0/1:85,50:28:138:0.370:2	0/1:63,58:30:123:0.479:2	0/1:3,123:29:127:0.976:2
chr3	52821011	rs1042779	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,32:29:83:0.386:2	0/1:32,26:30:58:0.448:2	0/1:8,4:30:13:0.333:2	0/1:1,100:30:102:0.990:2	./.	./.	./.	0/1:95,66:29:161:0.410:2	0/1:71,55:30:126:0.437:2	0/1:46,52:30:98:0.531:2	0/1:1,127:29:128:0.992:2
chr3	52821177	rs2286798	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,42:30:90:0.467:2	0/1:29,22:32:51:0.431:2	0/1:4,5:33:9:0.556:2	0/1:5,75:32:80:0.938:2	./.	./.	./.	0/1:26,42:32:68:0.618:2	0/1:38,38:32:76:0.500:2	0/1:30,37:31:67:0.552:2	0/1:0,119:31:119:1.00:2
chr3	52821993	rs71299618	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,7:35:10:0.700:2	./.	./.	./.	./.	./.	./.	0/1:0,4:35:4:1.00:2
chr3	52825585	rs9324	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,14:29:38:0.368:2	0/1:6,18:28:24:0.750:2	0/1:0,5:31:5:1.00:2	0/1:0,42:30:42:1.00:2	./.	./.	./.	0/1:20,22:29:42:0.524:2	0/1:28,22:30:50:0.440:2	0/1:27,8:29:35:0.229:2	0/1:0,32:27:32:1.00:2
chr3	52825912	rs7549	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,92:29:180:0.511:2	./.	./.	./.	./.	./.	./.	./.
chr3	52829578	rs139949746	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,25:29:49:0.510:2	./.	./.	./.	./.	./.	0/1:39,22:30:61:0.361:2	./.
chr3	52829607	rs56009954	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,12:30:32:0.375:2	./.	0/1:19,25:32:44:0.568:2	./.	./.	./.	./.
chr3	52830764	rs2240921	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,77:31:183:0.421:2	./.	./.	./.
chr3	52833032	rs199503739	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,99:30:188:0.527:2
chr3	52833805	rs3617	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,24:31:25:0.960:2	./.	./.	0/1:21,8:32:29:0.276:2	0/1:0,16:30:16:1.00:2	0/1:19,7:33:26:0.269:2	0/1:17,9:32:26:0.346:2	0/1:1,37:32:38:0.974:2
chr3	52833879	rs186486873	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,22:32:54:0.407:2	./.	./.
chr3	52833881	rs35271262	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,31:32:55:0.564:2	./.	./.
chr3	52847473	rs78780447	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,10:30:32:0.313:2	./.	./.	./.	./.	./.	./.
chr3	52852538	rs4687657	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,10:30:19:0.526:2	0/1:74,51:31:125:0.408:2	./.	./.	./.	0/1:99,73:31:172:0.424:2	0/1:97,64:32:161:0.398:2	0/1:46,63:31:109:0.578:2	0/1:2,121:31:124:0.984:2
chr3	52853747	rs2276815	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:31:6:0.667:2	0/1:26,22:28:48:0.458:2	./.	./.	./.	0/1:23,19:28:43:0.452:2	0/1:19,21:29:40:0.525:2	0/1:16,14:29:30:0.467:2	0/1:0,43:27:43:1.00:2
chr3	52854776	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:32:139:0.029:2	./.	./.	./.	./.
chr3	52860816	rs2276816	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,36:30:63:0.571:2	./.	./.	./.	./.	./.	0/1:21,18:30:39:0.462:2	0/1:26,28:31:54:0.519:2
chr3	52860936	rs2276817	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,9:29:11:0.818:2	0/1:35,36:28:71:0.507:2	./.	./.	./.	0/1:51,38:28:89:0.427:2	0/1:32,36:29:68:0.529:2	0/1:28,22:29:50:0.440:2	0/1:1,70:28:71:0.986:2
chr3	52861211	rs13072536	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,13:31:25:0.520:2	0/1:87,69:31:156:0.442:2	0/1:143,6:31:149:0.040:2	./.	./.	0/1:75,66:31:141:0.468:2	0/1:70,56:32:126:0.444:2	0/1:51,45:31:96:0.469:2	0/1:0,127:32:127:1.00:2
chr3	52864584	rs2071042	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,7:32:13:0.538:2	0/1:51,70:32:121:0.579:2	./.	./.	0/1:88,79:32:167:0.473:2	0/1:0,147:32:148:1.00:2	0/1:41,45:32:87:0.523:2	0/1:38,58:31:96:0.604:2	0/1:0,73:31:73:1.00:2
chr3	52864635	rs2276818	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,55:32:124:0.444:2	0/1:62,57:31:119:0.479:2	./.	./.	./.
chr3	52867715	rs6787916	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:33:86:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,111:33:111:1.00:2	0/1:0,116:32:116:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,95:33:95:1.00:2	0/1:2,113:32:115:0.983:2	0/1:0,115:34:115:1.00:2	0/1:0,103:32:103:1.00:2	0/1:0,134:33:134:1.00:2
chr3	52876835	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:30:93:0.043:2	./.	./.	./.	./.
chr3	52889390	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,5:30:61:0.082:2
chr3	52945122	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,5:27:182:0.028:2
chr3	53003179	rs11717619	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,39:32:41:0.951:2	0/1:37,40:32:77:0.519:2	./.	./.	./.
chr3	53125922	rs11242	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,133:30:133:1.00:2	0/1:1,76:30:77:0.987:2	0/1:0,16:30:16:1.00:2	0/1:5,188:30:193:0.974:2	./.	0/1:112,80:29:192:0.417:2	0/1:92,106:30:198:0.535:2	0/1:100,92:30:192:0.479:2	0/1:2,153:30:155:0.987:2	0/1:0,129:30:129:1.00:2	0/1:1,157:30:158:0.994:2
chr3	53133480	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:32:104:0.038:2	./.	./.	./.	./.	./.
chr3	53212506	rs144572650	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,42:28:87:0.483:2	./.	./.	./.	./.	./.
chr3	53213657	rs2230493	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,8:31:25:0.320:2	./.	0/1:117,75:29:192:0.391:2	./.	0/1:107,72:29:180:0.402:2	0/1:115,77:29:192:0.401:2	0/1:108,75:30:184:0.410:2	./.	0/1:107,69:29:176:0.392:2
chr3	53220215	rs2230494	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:41,22:31:63:0.349:2	0/1:19,18:31:37:0.486:2	./.	0/1:41,32:31:73:0.438:2	./.	0/1:1,74:30:75:0.987:2	0/1:2,126:30:129:0.984:2	./.	./.	0/1:35,42:31:77:0.545:2	0/1:35,30:32:65:0.462:2
chr3	53220309	rs150331740	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,37:31:69:0.536:2	0/1:32,14:32:46:0.304:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	53222761	rs2306574	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,56:31:57:0.982:2	0/1:0,50:31:50:1.00:2	0/1:0,15:31:15:1.00:2	0/1:51,48:31:99:0.485:2	0/1:2,60:31:62:0.968:2	0/1:47,43:31:90:0.478:2	0/1:48,44:32:92:0.478:2	0/1:0,100:31:100:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,72:31:72:1.00:2	0/1:56,47:32:103:0.456:2
chr3	53223927	rs1075865	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:28:32:1.00:2	0/1:0,23:28:23:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,44:30:44:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,28:28:28:1.00:2	0/1:0,55:29:55:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,45:29:45:1.00:2	0/1:0,66:29:67:1.00:2
chr3	53224002	rs900495	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,15:33:15:1.00:2	0/1:0,11:34:11:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,19:33:19:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,46:34:46:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,27:32:27:1.00:2
chr3	53259850	rs3163	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,77:32:153:0.503:2	./.	0/1:68,69:32:137:0.504:2	./.	0/1:42,58:33:100:0.580:2	0/1:2,119:32:121:0.983:2	./.
chr3	53264485	rs1131728	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,95:29:193:0.497:2	./.	0/1:102,95:29:197:0.482:2	./.	0/1:96,89:29:185:0.481:2	0/1:1,137:29:138:0.993:2	./.
chr3	53265525	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:30:105:0.038:2
chr3	53269046	rs1051485	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,37:30:93:0.398:2	./.	0/1:57,28:29:85:0.329:2	./.	0/1:55,53:30:108:0.491:2	0/1:1,78:30:79:0.987:2	./.
chr3	53269163	rs1051483	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,19:30:44:0.432:2	./.	0/1:21,36:31:57:0.632:2	./.	0/1:25,21:32:46:0.457:2	0/1:1,36:31:37:0.973:2	./.
chr3	53321631	rs9628	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:61,72:33:133:0.541:2	0/1:34,41:33:75:0.547:2	./.	0/1:79,69:33:148:0.466:2	0/1:81,62:31:143:0.434:2	0/1:77,64:32:141:0.454:2	0/1:1,99:32:100:0.990:2	0/1:96,76:32:172:0.442:2	./.	0/1:0,149:32:149:1.00:2	0/1:0,170:32:171:1.00:2
chr3	53326412	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,17:13:162:0.105:2
chr3	53531423	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,28:31:60:0.467:2	./.	./.	./.	./.	./.	./.	./.
chr3	53700550	rs2250736	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,9:29:19:0.474:2	0/1:77,56:28:133:0.421:2	./.	0/1:71,60:28:131:0.458:2	0/1:80,77:29:157:0.490:2	./.	./.	0/1:0,118:28:118:1.00:2	0/1:76,80:28:156:0.513:2
chr3	53766026	rs2612033	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:30:90:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,9:31:9:1.00:2	0/1:53,35:30:88:0.398:2	0/1:45,42:30:87:0.483:2	0/1:0,98:30:98:1.00:2	0/1:1,74:30:75:0.987:2	0/1:0,89:30:89:1.00:2	0/1:57,49:31:106:0.462:2	0/1:0,75:30:75:1.00:2	0/1:61,61:29:122:0.500:2
chr3	53769479	rs1045958	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,111:31:113:0.982:2	0/1:79,81:32:160:0.506:2	./.	0/1:40,59:33:99:0.596:2	0/1:36,39:30:75:0.520:2	0/1:47,46:30:93:0.495:2
chr3	53779825	rs3821860	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,2:33:4:0.500:2	0/1:31,17:32:48:0.354:2	./.	./.	0/1:1,36:33:37:0.973:2	./.	0/1:31,30:33:61:0.492:2	0/1:15,26:33:41:0.634:2	0/1:24,24:33:48:0.500:2
chr3	53804489	rs17053501	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,20:31:62:0.323:2	./.
chr3	53810651	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:34:174:0.023:2	./.	./.
chr3	53845295	rs10154841	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,38:31:67:0.567:2	0/1:22,25:31:47:0.532:2	./.	./.	./.	0/1:1,80:32:81:0.988:2	./.	./.
chr3	53851834	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:30:120:0.033:2	./.	./.	./.	./.	./.
chr3	53855738	rs35064726	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,44:32:94:0.468:2	./.	./.	./.	./.	./.	./.	0/1:48,31:32:79:0.392:2
chr3	53856653	rs2241808	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,24:32:51:0.471:2	0/1:24,15:30:39:0.385:2	0/1:1,14:32:15:0.933:2	0/1:34,46:32:82:0.575:2	0/1:22,45:32:67:0.672:2	./.	0/1:1,85:32:86:0.988:2	0/1:31,50:32:81:0.617:2	0/1:31,46:33:78:0.597:2	0/1:0,72:33:72:1.00:2	0/1:1,37:32:38:0.974:2
chr3	53857676	rs17053532	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:30:3:1.00:2	0/1:0,4:28:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	53857803	rs12676	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,4:30:5:0.800:2	0/1:2,3:26:5:0.600:2	0/1:0,2:29:2:1.00:2	0/1:0,3:28:3:1.00:2	0/1:0,7:28:7:1.00:2	./.	0/1:0,4:26:4:1.00:2	0/1:0,3:24:3:1.00:2	./.	0/1:0,8:29:8:1.00:2	0/1:0,4:29:4:1.00:2
chr3	53882661	rs2232333	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:48,58:32:106:0.547:2	0/1:26,38:33:64:0.594:2	./.	./.	0/1:52,38:32:90:0.422:2	./.	./.	./.	./.	./.	./.
chr3	53882663	rs1025690	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,45:31:107:0.421:2	0/1:42,24:31:66:0.364:2	0/1:0,5:31:5:1.00:2	0/1:0,124:31:124:1.00:2	0/1:38,52:31:90:0.578:2	0/1:0,119:31:119:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,98:32:98:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,105:31:105:1.00:2	0/1:0,155:31:155:1.00:2
chr3	53883722	rs1025689	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,24:30:55:0.436:2	0/1:26,9:28:35:0.257:2	0/1:0,6:29:6:1.00:2	0/1:0,80:29:80:1.00:2	0/1:22,31:29:53:0.585:2	0/1:0,56:28:56:1.00:2	0/1:1,39:28:40:0.975:2	0/1:48,19:26:67:0.284:2	0/1:0,63:30:63:1.00:2	0/1:21,17:27:38:0.447:2	0/1:0,61:29:61:1.00:2
chr3	53883784	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:31:84:0.048:2	./.	./.	./.	./.	./.
chr3	53886912	rs3733075	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,40:31:85:0.471:2	0/1:30,19:31:49:0.388:2	0/1:0,5:29:5:1.00:2	0/1:39,49:31:88:0.557:2	0/1:34,31:30:65:0.477:2	0/1:50,36:29:86:0.419:2	0/1:34,29:30:63:0.460:2	0/1:51,28:31:79:0.354:2	0/1:54,41:32:95:0.432:2	./.	0/1:48,38:31:86:0.442:2
chr3	53891682	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:148,4:32:152:0.026:2	./.	./.	./.	./.	./.	./.
chr3	53899276	rs1043261	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,18:28:31:0.581:2	0/1:25,20:29:45:0.444:2
chr3	53905308	rs1046677	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,56:32:108:0.519:2	0/1:35,42:32:77:0.545:2	0/1:0,18:33:18:1.00:2	0/1:83,77:32:160:0.481:2	0/1:77,77:31:154:0.500:2	0/1:77,83:32:160:0.519:2	0/1:57,71:33:128:0.555:2	0/1:71,93:32:164:0.567:2	0/1:83,67:33:150:0.447:2	0/1:57,51:33:108:0.472:2	0/1:0,166:32:166:1.00:2
chr3	53906513	rs4687757	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,36:32:68:0.529:2	0/1:25,11:32:36:0.306:2	0/1:0,6:32:6:1.00:2	0/1:25,39:31:64:0.609:2	0/1:59,41:30:100:0.410:2	0/1:49,18:31:67:0.269:2	0/1:53,37:32:90:0.411:2	0/1:52,43:31:95:0.453:2	0/1:52,50:33:102:0.490:2	0/1:28,37:32:65:0.569:2	0/1:1,55:31:56:0.982:2
chr3	53916103	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,71:31:160:0.444:2	./.	./.	./.	./.
chr3	53925775	rs2276847	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,30:30:54:0.556:2	./.
chr3	53925849	rs2276848	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,23:32:40:0.575:2	0/1:23,26:30:49:0.531:2
chr3	54354510	rs9879885	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,72:30:72:1.00:2	0/1:0,32:29:32:1.00:2	./.	0/1:1,40:30:41:0.976:2	0/1:19,15:30:34:0.441:2	0/1:0,52:29:52:1.00:2	0/1:1,59:30:60:0.983:2	0/1:49,45:30:94:0.479:2	0/1:1,83:31:84:0.988:2	./.	0/1:0,78:30:78:1.00:2
chr3	54615874	rs186772682	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,18:30:36:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr3	54661890	rs35593475	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,38:33:78:0.487:2	./.	./.	./.	./.	./.	./.
chr3	54798258	rs3732748	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,29:32:59:0.492:2	0/1:0,28:31:28:1.00:2	0/1:33,26:31:59:0.441:2	0/1:36,23:32:59:0.390:2	0/1:0,33:31:33:1.00:2	0/1:39,25:32:64:0.391:2	0/1:30,27:31:57:0.474:2	./.
chr3	54880461	rs3773603	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:41,33:32:74:0.446:2	0/1:31,12:29:43:0.279:2	./.	./.	0/1:40,35:31:75:0.467:2	0/1:60,53:31:113:0.469:2	0/1:44,62:32:106:0.585:2	./.	./.	./.	0/1:49,61:32:110:0.555:2
chr3	54930794	rs17054524	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:30:13:0.462:2	./.	./.	./.	./.	./.	./.	0/1:45,17:32:62:0.274:2	0/1:64,33:31:97:0.340:2
chr3	54961949	rs4245920	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,38:32:39:0.974:2	0/1:0,17:31:17:1.00:2	0/1:0,3:32:3:1.00:2	0/1:29,12:32:41:0.293:2	0/1:0,38:30:38:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,45:31:45:1.00:2	./.	0/1:0,32:32:32:1.00:2	0/1:0,47:32:47:1.00:2
chr3	55003851	rs201869172	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,102:33:190:0.537:2	./.	./.
chr3	55108149	rs17054785	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,49:30:106:0.462:2	./.	./.	./.	./.	./.	0/1:46,32:29:78:0.410:2	0/1:47,42:28:89:0.472:2
chr3	55108188	rs35471424	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,63:29:162:0.389:2	./.	./.	./.	./.	./.	0/1:73,53:28:126:0.421:2	0/1:72,74:28:146:0.507:2
chr3	55504529	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,3:31:30:0.100:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	55508644	rs147104982	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:32:8:1.00:2	./.	./.	./.	./.	0/1:6,5:27:11:0.455:2	./.	./.	0/1:8,3:32:11:0.273:2	./.	./.
chr3	56114861	rs12488237	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,25:31:59:0.424:2	./.	0/1:63,29:32:92:0.315:2	./.	./.	./.
chr3	56173541	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:34:110:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	56330368	rs56227347	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,76:32:138:0.551:2	./.	./.	./.	./.	./.	./.	./.
chr3	56597954	rs6769055	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:32:54:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,11:32:11:1.00:2	0/1:39,38:32:77:0.494:2	0/1:31,25:32:56:0.446:2	0/1:22,35:32:57:0.614:2	0/1:0,50:32:50:1.00:2	0/1:1,65:31:66:0.985:2	0/1:45,30:33:75:0.400:2	0/1:0,47:32:47:1.00:2	0/1:1,81:32:82:0.988:2
chr3	56601044	rs71309963	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,26:32:53:0.491:2	./.	0/1:13,15:32:28:0.536:2	./.	./.	./.
chr3	56627048	rs1388256	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:33:73:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,11:34:11:1.00:2	0/1:39,38:33:77:0.494:2	0/1:28,32:32:60:0.533:2	0/1:36,46:32:82:0.561:2	0/1:0,67:33:67:1.00:2	0/1:0,100:33:100:1.00:2	0/1:0,87:34:87:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,97:33:98:1.00:2
chr3	56627598	rs1491170	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,127:30:127:1.00:2	0/1:0,75:30:75:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,158:30:158:1.00:2	0/1:0,164:30:165:1.00:2	0/1:2,170:30:172:0.988:2	0/1:1,162:30:163:0.994:2	0/1:0,161:30:162:1.00:2	0/1:1,164:30:165:0.994:2	0/1:2,135:30:137:0.985:2	0/1:0,157:29:157:1.00:2
chr3	56628031	rs7637449	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:71,52:32:123:0.423:2	0/1:30,30:32:60:0.500:2	./.	0/1:66,74:31:140:0.529:2	0/1:71,38:31:109:0.349:2	./.	0/1:3,110:32:113:0.973:2	./.	./.	0/1:2,111:32:113:0.982:2	0/1:88,55:32:143:0.385:2
chr3	56649282	rs6807338	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,13:31:33:0.394:2	./.	./.	0/1:104,74:31:179:0.416:2	./.	0/1:103,83:31:186:0.446:2	./.	./.	./.
chr3	56650012	rs4681904	G	A,C	.	PASS	AC=1,2;AF=0.111,0.222;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	./.	0/2:33:80:0.392:2	0/2:32:47:0.511:2	./.	./.	0/1:30:43:0.390:2	./.	./.	./.
chr3	56653424	rs61747991	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,81:30:107:0.764:2	./.	./.
chr3	56653427	rs61747994	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,81:33:109:0.750:2	./.	./.
chr3	56657197	rs3732506	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,10:28:18:0.556:2	./.	./.	0/1:57,33:28:90:0.367:2	./.	0/1:61,48:29:109:0.440:2	./.	./.	./.
chr3	56657392	rs185985978	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,22:31:63:0.349:2	./.	./.	./.	./.	./.	./.
chr3	56658871	rs2291498	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,81:30:182:0.445:2	0/1:44,40:29:84:0.476:2	0/1:88,66:30:154:0.429:2	./.	./.	./.	./.	./.
chr3	56667213	rs34828128	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,17:31:52:0.327:2	./.	./.	./.	./.	./.	./.
chr3	56667682	rs9835332	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,16:32:34:0.471:2	0/1:5,8:32:13:0.615:2	./.	0/1:29,15:32:44:0.341:2	0/1:12,6:31:18:0.333:2	0/1:0,13:32:13:1.00:2	./.	0/1:0,23:33:23:1.00:2	0/1:0,28:33:28:1.00:2	./.	0/1:35,14:35:49:0.286:2
chr3	56682841	rs71621834	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	0/1:36,24:30:60:0.400:2	./.	0/1:34,36:30:70:0.514:2	./.	./.	./.
chr3	56702553	rs146406667	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,17:28:47:0.362:2	./.	./.	./.
chr3	56703746	rs13094666	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:21,33:33:54:0.611:2	0/1:35,13:33:48:0.271:2	0/1:0,10:31:10:1.00:2	./.	./.	0/1:29,46:33:75:0.613:2	./.	0/1:1,76:32:77:0.987:2	0/1:30,42:32:72:0.583:2	./.	0/1:61,43:32:104:0.413:2
chr3	56707684	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:36:95:0.042:2	./.	./.	./.	./.
chr3	56716922	rs958755	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,8:32:39:0.205:2	0/1:20,19:33:39:0.487:2	0/1:0,8:33:8:1.00:2	0/1:27,22:33:49:0.449:2	0/1:45,26:30:71:0.366:2	0/1:0,63:32:63:1.00:2	./.	0/1:0,45:32:45:1.00:2	0/1:0,49:33:49:1.00:2	./.	0/1:23,15:31:38:0.395:2
chr3	56763316	rs1565376	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:106,77:32:183:0.421:2	0/1:57,53:32:110:0.482:2	0/1:0,27:32:27:1.00:2	./.	0/1:3,185:32:188:0.984:2	0/1:104,92:31:196:0.469:2	./.	0/1:106,93:32:199:0.467:2	0/1:93,101:33:194:0.521:2	./.	./.
chr3	56763328	rs1565377	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:111,79:32:190:0.416:2	0/1:55,56:32:111:0.505:2	0/1:0,22:32:22:1.00:2	./.	0/1:3,183:32:186:0.984:2	0/1:97,95:32:192:0.495:2	./.	0/1:101,89:33:190:0.468:2	0/1:97,89:33:187:0.478:2	./.	./.
chr3	56763525	rs1009118	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,10:32:24:0.417:2	./.	./.	0/1:105,90:32:195:0.462:2	./.	0/1:89,96:33:185:0.519:2	./.	./.	./.
chr3	56763619	rs6765444	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:29:13:0.462:2	./.	./.	0/1:81,47:29:129:0.367:2	./.	0/1:57,62:30:119:0.521:2	./.	./.	./.
chr3	56771251	rs3772219	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:36,31:29:67:0.463:2	0/1:20,23:30:43:0.535:2	0/1:0,10:29:10:1.00:2	./.	0/1:0,77:28:77:1.00:2	0/1:55,59:28:114:0.518:2	./.	0/1:48,40:27:88:0.455:2	0/1:44,58:29:102:0.569:2	./.	./.
chr3	56779360	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:31:87:0.046:2	./.	./.	./.
chr3	56835761	rs3732508	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:31:10:1.00:2	0/1:2,117:32:119:0.983:2	./.	0/1:0,103:31:103:1.00:2	./.	0/1:0,162:31:162:1.00:2	0/1:44,43:31:87:0.494:2	./.	0/1:21,42:32:63:0.667:2
chr3	57108101	rs76587478	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,21:32:49:0.429:2	./.	./.	0/1:29,28:31:57:0.491:2	./.
chr3	57108501	rs143352990	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,24:33:53:0.453:2	./.	./.	0/1:26,24:32:50:0.480:2	./.
chr3	57108551	rs12636899	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,47:30:72:0.653:2	0/1:0,42:30:42:1.00:2	./.	./.	./.	0/1:14,38:30:52:0.731:2	./.	./.
chr3	57109095	rs6773315	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,88:32:194:0.454:2	./.	./.	./.
chr3	57132041	rs374959214	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,39:32:83:0.470:2	./.
chr3	57132200	rs2291462	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:33:61:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,10:31:10:1.00:2	0/1:38,45:33:83:0.542:2	./.	0/1:0,86:32:86:1.00:2	0/1:33,30:32:63:0.476:2	0/1:1,87:32:88:0.989:2	0/1:49,33:32:82:0.402:2	0/1:23,43:33:66:0.652:2	0/1:0,65:33:65:1.00:2
chr3	57136585	rs17057718	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,38:31:89:0.427:2	./.	./.	./.
chr3	57138419	rs6780995	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,49:32:49:1.00:2	0/1:0,25:32:25:1.00:2	./.	0/1:30,17:32:47:0.362:2	./.	0/1:0,40:30:40:1.00:2	0/1:22,24:31:46:0.522:2	0/1:49,19:32:68:0.279:2	0/1:34,23:33:57:0.404:2	0/1:17,26:33:43:0.605:2	0/1:1,49:32:50:0.980:2
chr3	57139972	rs1545981	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:30:70:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,10:30:10:1.00:2	0/1:42,40:29:82:0.488:2	./.	0/1:0,81:30:81:1.00:2	0/1:0,86:29:86:1.00:2	0/1:1,89:29:91:0.989:2	0/1:45,19:32:64:0.297:2	0/1:0,64:29:64:1.00:2	0/1:0,84:29:84:1.00:2
chr3	57272115	rs147166062	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,60:33:133:0.451:2
chr3	57280235	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:32:108:0.037:2	./.	./.	./.	./.
chr3	57293061	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:30:87:0.046:2	./.	./.	./.	./.	./.
chr3	57303684	rs11544593	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,20:33:59:0.339:2	0/1:25,19:32:44:0.432:2	./.	./.	./.	./.	./.	./.	0/1:40,42:34:82:0.512:2	./.	./.
chr3	57310715	rs146163375	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,9:33:22:0.409:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	57312862	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:33:49:0.082:2	./.
chr3	57335876	rs4060726	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:33:85:1.00:2	0/1:0,64:33:64:1.00:2	0/1:6,8:33:14:0.571:2	0/1:0,73:32:73:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,83:32:83:1.00:2	./.	0/1:48,44:33:92:0.478:2	0/1:0,90:34:90:1.00:2	0/1:0,67:33:67:1.00:2	0/1:53,37:33:90:0.411:2
chr3	57368572	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:34:191:0.021:2
chr3	57386148	rs12053975	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:46,47:33:93:0.505:2	0/1:36,23:33:59:0.390:2	0/1:4,3:32:7:0.429:2	./.	./.	0/1:65,44:33:109:0.404:2	./.	0/1:78,45:33:123:0.366:2	./.	0/1:57,44:33:101:0.436:2	./.
chr3	57388114	rs6445873	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,27:32:27:1.00:2	0/1:0,12:31:12:1.00:2	./.	./.	./.	0/1:27,16:31:43:0.372:2	./.	0/1:24,11:31:35:0.314:2	0/1:40,17:31:57:0.298:2	0/1:0,34:31:34:1.00:2	0/1:24,19:32:43:0.442:2
chr3	57394233	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:33:95:0.042:2	./.	./.	./.	./.
chr3	57401178	rs140326175	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,20:33:43:0.465:2	./.
chr3	57401266	rs189965161	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,48:32:109:0.440:2	./.	./.	./.
chr3	57414071	rs4681982	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,10:31:35:0.286:2	0/1:6,5:32:11:0.455:2	./.	./.	./.	0/1:18,13:30:31:0.419:2	./.	./.	0/1:16,6:28:22:0.273:2	0/1:0,12:32:12:1.00:2	0/1:24,22:30:46:0.478:2
chr3	57414097	rs17793014	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:8,18:32:26:0.692:2	0/1:5,6:32:11:0.545:2	./.	0/1:9,12:31:21:0.571:2	./.	0/1:11,16:30:27:0.593:2	0/1:0,14:31:14:1.00:2	0/1:4,10:31:14:0.714:2	./.	./.	0/1:24,15:31:39:0.385:2
chr3	57414434	rs4462937	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:25,19:33:44:0.432:2	0/1:12,16:32:28:0.571:2	0/1:2,3:32:5:0.600:2	./.	./.	0/1:21,22:32:43:0.512:2	./.	0/1:19,31:32:50:0.620:2	./.	0/1:25,24:32:49:0.490:2	./.
chr3	57414525	rs17736736	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,25:33:40:0.625:2	./.
chr3	57419497	rs6773904	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:33:56:1.00:2	0/1:0,30:32:30:1.00:2	0/1:2,4:31:6:0.667:2	0/1:35,25:31:60:0.417:2	./.	0/1:0,48:31:48:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,55:31:55:1.00:2	./.	0/1:17,21:32:38:0.553:2	./.
chr3	57430988	rs6768943	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:1,40:32:41:0.976:2	0/1:3,4:33:7:0.571:2	0/1:40,37:31:77:0.481:2	./.	0/1:0,89:31:89:1.00:2	0/1:0,43:32:43:1.00:2	0/1:2,68:32:70:0.971:2	./.	0/1:0,67:32:67:1.00:2	./.
chr3	57431945	rs62622492	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,42:33:76:0.553:2
chr3	57431985	rs2121743	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,38:31:38:1.00:2	0/1:0,27:31:27:1.00:2	./.	0/1:14,8:30:22:0.364:2	./.	0/1:0,44:30:44:1.00:2	0/1:4,27:31:31:0.871:2	0/1:0,34:30:34:1.00:2	./.	0/1:2,32:31:34:0.941:2	./.
chr3	57432330	rs146242022	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,79:33:156:0.506:2	./.
chr3	57438588	rs116615500	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,54:31:83:0.651:2	./.
chr3	57438710	rs201687411	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,10:20:32:0.313:2	./.	./.	0/1:25,9:13:34:0.265:2	0/1:14,9:17:23:0.391:2	0/1:25,11:18:36:0.306:2	0/1:13,9:17:22:0.409:2	0/1:23,13:17:36:0.361:2	./.	0/1:16,14:18:30:0.467:2	0/1:31,11:21:42:0.262:2
chr3	57443529	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.	./.
chr3	57448553	rs62621232	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,34:32:78:0.436:2	./.
chr3	57475351	rs6806444	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:32:81:1.00:2	0/1:0,31:32:31:1.00:2	0/1:9,6:32:15:0.400:2	0/1:53,29:32:82:0.354:2	./.	0/1:0,68:32:68:1.00:2	0/1:0,84:32:84:1.00:2	0/1:2,106:32:108:0.981:2	./.	0/1:0,98:32:98:1.00:2	0/1:68,83:32:151:0.550:2
chr3	57494138	rs6445902	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,8:32:17:0.471:2	./.	./.	./.	./.	0/1:15,11:32:26:0.423:2	0/1:26,17:33:43:0.395:2
chr3	57494165	rs10510794	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,13:29:41:0.317:2	./.
chr3	57509366	rs146095437	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,8:31:14:0.571:2	./.
chr3	57528503	rs9311651	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,24:34:77:0.312:2	./.	./.
chr3	57542173	rs2241988	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,10:31:26:0.385:2	0/1:7,15:32:22:0.682:2	0/1:0,2:31:2:1.00:2	0/1:21,37:32:58:0.638:2	./.	0/1:0,38:31:38:1.00:2	0/1:17,13:31:30:0.433:2	0/1:1,39:32:40:0.975:2	./.	0/1:11,6:32:17:0.353:2	./.
chr3	57542199	rs61747701	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,31:32:50:0.620:2	0/1:21,15:32:36:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	57543369	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,4:33:75:0.053:2	./.	./.	./.	./.	./.	./.
chr3	57614010	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,6:32:194:0.031:2	./.	./.	./.	./.	./.
chr3	57643477	rs114967808	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,14:32:27:0.519:2	./.	0/1:9,18:32:27:0.667:2	./.	0/1:21,16:31:37:0.432:2	./.	./.	./.
chr3	57644825	rs55790297	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,17:32:34:0.500:2	0/1:8,8:31:16:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	57846542	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,5:27:58:0.086:2
chr3	57846556	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,15:29:26:0.577:2	./.	./.	./.	./.	./.
chr3	57857390	rs78203390	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:26:52:0.077:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	57882601	rs17058639	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,51:31:105:0.486:2	./.	0/1:66,50:30:116:0.431:2	0/1:33,36:32:69:0.522:2	0/1:2,77:31:79:0.975:2	./.	./.	./.
chr3	57898376	rs35219531	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,6:32:10:0.600:2	0/1:5,10:32:15:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	57898969	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,5:27:132:0.038:2	./.	./.	./.	./.	./.
chr3	57902639	rs17745496	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,29:32:104:0.279:2	./.
chr3	57994523	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:31:146:0.027:2
chr3	57994561	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:32:100:0.040:2
chr3	58081888	rs1522384	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,31:30:59:0.525:2	0/1:0,63:30:63:1.00:2	0/1:23,15:30:38:0.395:2	0/1:46,26:29:72:0.361:2	0/1:2,48:31:50:0.960:2	./.	0/1:29,23:31:52:0.442:2	./.
chr3	58095008	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:33:129:0.031:2	./.	./.	./.	./.	./.
chr3	58109162	rs1131356	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,35:31:62:0.565:2	0/1:0,50:30:50:1.00:2	0/1:30,37:30:67:0.552:2	0/1:20,22:30:42:0.524:2	0/1:1,65:31:66:0.985:2	./.	0/1:24,25:31:49:0.510:2	./.
chr3	58111329	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:32:142:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	58112440	rs2362903	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,67:31:130:0.515:2	0/1:1,115:30:116:0.991:2	0/1:1,91:30:92:0.989:2	0/1:68,38:31:106:0.358:2	0/1:0,104:31:104:1.00:2	./.	0/1:0,90:30:90:1.00:2	./.
chr3	58112488	rs2362904	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,27:32:59:0.458:2	0/1:0,52:32:52:1.00:2	0/1:31,18:32:49:0.367:2	0/1:36,16:32:52:0.308:2	0/1:0,50:31:50:1.00:2	./.	0/1:17,23:32:40:0.575:2	./.
chr3	58118555	rs12632456	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,66:32:107:0.617:2	0/1:0,105:32:105:1.00:2	0/1:58,61:31:119:0.513:2	0/1:73,55:32:128:0.430:2	0/1:0,113:32:113:1.00:2	./.	0/1:46,43:33:89:0.483:2	./.
chr3	58121889	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:31:103:0.039:2	./.	./.	./.	./.	./.
chr3	58124076	rs149070858	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,90:32:173:0.520:2	./.	./.	./.
chr3	58134505	rs62621996	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:21,20:32:41:0.488:2	0/1:9,11:31:20:0.550:2	./.	./.	./.	./.	0/1:14,17:32:31:0.548:2	./.	./.	./.	./.
chr3	58135642	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:32:143:0.028:2	./.
chr3	58154327	rs8640	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,35:31:78:0.449:2	0/1:0,68:31:68:1.00:2	0/1:50,42:30:92:0.457:2	0/1:66,53:31:119:0.445:2	0/1:0,110:31:110:1.00:2	./.	0/1:46,33:32:79:0.418:2	./.
chr3	58155322	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,23:31:58:0.397:2	./.
chr3	58183692	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	58191242	rs17058970	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,13:32:22:0.591:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	58191266	rs2070117	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,58:32:128:0.453:2	0/1:0,63:31:63:1.00:2	0/1:70,47:31:117:0.402:2	0/1:53,35:32:88:0.398:2	0/1:71,48:32:119:0.403:2	./.	./.	./.
chr3	58196583	rs34252389	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,52:30:126:0.413:2	./.	./.	./.	0/1:74,78:31:152:0.513:2	./.
chr3	58318763	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.
chr3	58376870	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	58382846	rs3191903	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:41,36:31:77:0.468:2	0/1:32,19:32:51:0.373:2	./.	0/1:58,41:31:99:0.414:2	./.	./.	0/1:39,22:32:61:0.361:2	./.	0/1:46,51:32:97:0.526:2	0/1:42,23:32:65:0.354:2	0/1:59,41:32:100:0.410:2
chr3	58394672	rs377175272	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,4:32:73:0.055:2	./.	./.	./.	./.	./.	./.	./.
chr3	58395863	rs56384862	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:33,18:34:51:0.353:2	0/1:15,5:33:20:0.250:2	./.	0/1:27,28:33:56:0.509:2	./.	./.	0/1:31,16:33:47:0.340:2	./.	0/1:39,22:33:61:0.361:2	0/1:26,16:33:42:0.381:2	0/1:28,30:32:58:0.517:2
chr3	58395891	rs4681851	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,24:32:59:0.407:2	./.	./.	./.	0/1:30,35:32:65:0.538:2	./.	./.	./.
chr3	58410554	rs34579268	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:53,45:28:99:0.459:2	0/1:30,18:29:48:0.375:2	./.	0/1:45,43:29:88:0.489:2	./.	./.	0/1:57,48:26:105:0.457:2	./.	0/1:58,45:28:104:0.437:2	0/1:56,42:28:98:0.429:2	0/1:44,59:28:103:0.573:2
chr3	58416448	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:33:147:0.027:2	./.	./.
chr3	58416506	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:31:125:0.032:2	./.	./.	./.
chr3	58416535	rs1126551	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:44,37:31:81:0.457:2	0/1:37,34:30:71:0.479:2	./.	0/1:55,47:31:102:0.461:2	./.	./.	0/1:51,49:31:100:0.490:2	./.	0/1:60,51:32:111:0.459:2	0/1:50,43:31:93:0.462:2	0/1:37,61:30:98:0.622:2
chr3	58416538	rs4264746	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:33:77:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,100:32:100:1.00:2	0/1:1,97:32:98:0.990:2	0/1:0,101:32:101:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,124:32:125:1.00:2	0/1:0,110:32:110:1.00:2	0/1:0,91:31:91:1.00:2	0/1:1,92:32:93:0.989:2
chr3	58484521	rs9853873	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:117,75:33:192:0.391:2	0/1:93,74:32:167:0.443:2	0/1:21,14:32:35:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	58487275	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:32:85:0.047:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	58508268	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:32:142:0.028:2	./.	./.	./.	./.
chr3	58512237	rs1127745	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,46:32:119:0.387:2	./.	./.
chr3	58512375	rs1127743	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,53:29:129:0.411:2	./.	./.
chr3	58517450	rs150832314	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,39:33:84:0.464:2	./.	./.
chr3	58517520	rs57216393	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,12:31:32:0.375:2	./.	./.
chr3	58519724	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:118,4:31:122:0.033:2	./.	./.	./.	./.	./.	./.
chr3	58552390	rs190737468	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,11:31:35:0.314:2	./.	./.	./.	./.	./.	./.
chr3	58625875	rs33966924	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:47,38:31:85:0.447:2	0/1:27,18:31:45:0.400:2	./.	./.	0/1:51,59:31:110:0.536:2	0/1:67,54:30:121:0.446:2	./.	0/1:74,47:31:121:0.388:2	0/1:60,41:32:101:0.406:2	./.	./.
chr3	58639465	rs35045921	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,31:34:65:0.477:2	./.	./.
chr3	58853658	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,5:27:115:0.043:2	./.	./.	./.
chr3	58855971	rs77036152	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,50:31:146:0.342:2	./.	./.	./.	./.	./.
chr3	59908126	rs1385816	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,29:30:50:0.580:2	0/1:13,20:31:33:0.606:2	./.	./.
chr3	59997112	rs1130972	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,31:32:70:0.443:2	./.	0/1:39,22:33:61:0.361:2	0/1:0,89:33:89:1.00:2	./.	./.	./.
chr3	61975382	rs62620047	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:33:7:0.571:2	./.	./.	./.	./.	./.	0/1:53,40:33:93:0.430:2	./.	./.
chr3	62063888	rs373688958	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,89:33:179:0.500:2	./.	./.
chr3	62189189	rs2292245	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:140,5:31:145:0.034:2	./.	0/1:73,52:32:125:0.416:2	0/1:55,56:32:111:0.505:2	./.	./.	./.
chr3	62189437	rs17634074	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,42:28:86:0.488:2	0/1:63,37:28:100:0.370:2	./.	./.	./.
chr3	62229553	rs1352882	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:32:85:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,70:31:70:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,97:31:97:1.00:2	0/1:1,64:32:65:0.985:2	0/1:0,91:31:91:1.00:2	0/1:0,130:33:130:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,112:32:112:1.00:2
chr3	62319048	rs114729571	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,12:32:36:0.333:2
chr3	62431415	rs6791296	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,12:30:21:0.571:2	0/1:10,6:29:16:0.375:2	0/1:0,4:29:4:1.00:2	0/1:0,28:29:28:1.00:2	0/1:9,16:28:25:0.640:2	./.	0/1:1,17:25:18:0.944:2	0/1:0,19:30:19:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,19:30:19:1.00:2	0/1:3,28:30:31:0.903:2
chr3	62459992	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:33:72:0.056:2	./.	./.
chr3	62543123	rs4396888	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:33:7:0.857:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	62556622	rs833663	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:33:92:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,19:33:19:1.00:2	0/1:0,116:33:116:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,88:32:89:1.00:2	0/1:0,85:33:85:1.00:2	0/1:0,97:33:98:1.00:2	0/1:0,119:33:119:1.00:2	0/1:0,78:33:78:1.00:2	0/1:1,101:33:102:0.990:2
chr3	62636585	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,5:28:166:0.030:2	./.
chr3	63264201	rs6767876	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,39:31:84:0.464:2	0/1:47,27:31:74:0.365:2	./.	./.	./.	0/1:72,50:31:122:0.410:2	./.	./.	./.	./.	./.
chr3	63645410	rs73111385	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,34:32:64:0.531:2	./.	./.	./.
chr3	63967900	rs1053338	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:33:9:1.00:2	0/1:46,62:33:108:0.574:2	./.	0/1:62,55:32:117:0.470:2	./.	./.	./.	0/1:52,44:34:96:0.458:2	0/1:48,62:33:110:0.564:2
chr3	63968083	rs61736574	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,16:32:45:0.356:2	./.	./.	./.
chr3	63968653	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:32:43:0.093:2	./.
chr3	63981424	rs1053339	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,91:32:178:0.511:2	./.	./.	./.
chr3	63981676	rs61736567	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:32:5:0.800:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	63982082	rs3774729	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,64:32:127:0.504:2	0/1:43,46:32:89:0.517:2	0/1:0,24:31:24:1.00:2	0/1:113,76:32:189:0.402:2	./.	0/1:1,190:31:191:0.995:2	./.	0/1:108,90:32:198:0.455:2	0/1:93,104:33:197:0.528:2	0/1:126,70:32:196:0.357:2	./.
chr3	63985157	rs180696871	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,51:31:85:0.600:2	./.
chr3	63996363	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,4:30:59:0.068:2	./.	./.	./.	./.	./.	./.	./.
chr3	64133182	rs34460293	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,47:31:92:0.511:2	./.	./.	./.	0/1:33,40:31:73:0.548:2
chr3	64133350	rs27673	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:30:45:1.00:2	0/1:0,44:29:44:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,85:29:85:1.00:2	0/1:0,85:29:85:1.00:2	0/1:0,79:29:79:1.00:2	0/1:0,70:29:70:1.00:2	0/1:0,73:29:73:1.00:2	0/1:0,71:30:71:1.00:2	0/1:0,76:29:76:1.00:2	0/1:0,81:29:81:1.00:2
chr3	64142859	rs17720698	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,16:31:29:0.552:2	./.	0/1:98,93:31:191:0.487:2	./.	0/1:96,90:32:186:0.484:2	./.	./.	./.	0/1:100,90:31:190:0.474:2
chr3	64587818	rs6771712	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,69:32:144:0.479:2	./.	0/1:43,38:31:81:0.469:2	./.	./.
chr3	64592735	rs193189492	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,34:31:72:0.472:2	./.	./.	./.
chr3	64619259	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,33:30:76:0.434:2	./.	./.	./.	./.	./.	./.	./.
chr3	64672474	rs36115950	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,57:28:123:0.467:2	./.	./.	./.	./.	./.	./.	./.
chr3	65350596	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:31:138:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	65365147	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,25:30:52:0.481:2	0/1:18,17:31:35:0.486:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	65438963	rs75366414	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.	./.	./.	./.
chr3	66396845	rs332354	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,33:32:68:0.485:2	0/1:28,23:31:51:0.451:2	0/1:1,5:32:6:0.833:2	0/1:0,47:31:47:1.00:2	0/1:33,15:31:49:0.313:2	0/1:59,34:31:93:0.366:2	0/1:0,30:31:30:1.00:2	0/1:46,30:31:76:0.395:2	./.	./.	./.
chr3	66419883	rs2293193	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	66419942	rs1129179	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,36:29:77:0.468:2	./.	./.	0/1:43,47:29:90:0.522:2	./.	./.	0/1:34,29:30:64:0.460:2
chr3	66419956	rs13874	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:33:3:1.00:2	0/1:55,44:32:99:0.444:2	0/1:0,81:32:81:1.00:2	0/1:46,48:31:94:0.511:2	0/1:69,28:32:97:0.289:2	0/1:48,52:31:100:0.520:2	./.	./.	0/1:34,33:32:67:0.493:2
chr3	66421713	rs201476115	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,88:32:184:0.478:2	./.
chr3	66430811	rs2279290	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,37:30:101:0.366:2	./.	./.	0/1:75,55:29:131:0.423:2	./.	./.	0/1:40,31:28:71:0.437:2
chr3	66430870	rs61754218	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,34:32:71:0.479:2	0/1:17,25:32:42:0.595:2	0/1:31,27:31:58:0.466:2	0/1:37,21:31:58:0.362:2	./.	./.	./.	./.
chr3	66431144	rs140085866	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:30:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	66433507	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:30:116:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	66433676	rs900171	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,45:32:108:0.417:2	0/1:30,34:32:64:0.531:2	0/1:0,16:32:16:1.00:2	0/1:0,135:32:135:1.00:2	0/1:0,135:32:135:1.00:2	0/1:55,72:33:127:0.567:2	0/1:0,117:32:117:1.00:2	0/1:0,139:32:139:1.00:2	./.	./.	0/1:78,40:31:118:0.339:2
chr3	66433722	rs78198874	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,43:32:75:0.573:2	0/1:39,18:32:57:0.316:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	66433735	rs116809906	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,32:31:71:0.451:2	./.	./.	./.	./.
chr3	66434643	rs2306272	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,80:28:168:0.476:2	0/1:71,59:28:130:0.454:2	0/1:17,17:28:34:0.500:2	0/1:100,59:28:159:0.371:2	0/1:112,74:28:186:0.398:2	0/1:93,87:28:180:0.483:2	0/1:98,93:28:191:0.487:2	0/1:105,77:28:182:0.423:2	./.	./.	./.
chr3	66434668	rs34993786	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:123,68:31:191:0.356:2	./.	./.	./.	./.	./.	./.	./.
chr3	66436558	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,93:31:187:0.497:2	./.	./.
chr3	66444615	rs6793110	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,9:31:19:0.474:2	./.	0/1:105,72:31:177:0.407:2	./.	./.	0/1:82,88:31:171:0.518:2	./.	./.	0/1:94,79:31:173:0.457:2
chr3	66550756	rs1403625	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:35:2:1.00:2	./.	./.	./.	./.
chr3	66550762	rs1403626	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.
chr3	67048762	rs4856833	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,39:30:80:0.488:2	0/1:20,21:32:41:0.512:2	0/1:4,7:33:11:0.636:2	0/1:2,97:32:99:0.980:2	0/1:52,30:30:82:0.366:2	./.	0/1:43,20:32:63:0.317:2	./.	0/1:59,30:33:89:0.337:2	0/1:0,71:31:71:1.00:2	0/1:0,98:32:98:1.00:2
chr3	67053926	rs75804175	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,18:34:50:0.360:2	./.	0/1:34,20:32:54:0.370:2
chr3	67054649	rs13096789	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,51:30:102:0.500:2	./.	0/1:74,56:31:130:0.431:2	./.	./.	./.	./.
chr3	67426281	rs35494829	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,36:32:83:0.434:2	0/1:32,24:32:56:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	67548583	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,96:31:197:0.487:2	./.	./.	./.	./.	./.
chr3	67568707	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:32:53:0.075:2	./.	./.	./.	./.
chr3	68593660	rs139431393	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,55:32:111:0.495:2	0/1:34,34:32:68:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	68934283	rs17048099	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,36:34:86:0.419:2	./.	./.
chr3	69036678	rs4855540	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:50,24:33:74:0.324:2	0/1:30,15:33:45:0.333:2	./.	0/1:33,36:33:70:0.522:2	0/1:25,17:32:42:0.405:2	./.	./.	0/1:40,37:33:77:0.481:2	./.	./.	./.
chr3	69054341	rs6781612	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,25:32:48:0.521:2	0/1:16,11:32:27:0.407:2	./.	0/1:42,15:32:57:0.263:2	0/1:27,6:31:33:0.182:2	./.	./.	0/1:32,22:32:54:0.407:2	./.	./.	./.
chr3	69075177	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:32:121:0.033:2	./.
chr3	69078985	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:31:118:0.034:2	./.
chr3	69082708	rs1532918	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,24:33:50:0.480:2	./.	./.	./.	./.	./.	0/1:19,19:33:38:0.500:2	./.
chr3	69084235	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:33:143:0.028:2	./.	./.	./.	./.
chr3	69096614	rs2292199	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,110:32:113:0.982:2	0/1:0,83:32:83:1.00:2	0/1:0,15:31:15:1.00:2	0/1:97,72:31:169:0.426:2	0/1:0,111:31:111:1.00:2	0/1:0,157:31:157:1.00:2	0/1:0,119:31:120:1.00:2	0/1:1,133:31:134:0.993:2	0/1:85,65:33:150:0.433:2	0/1:80,58:32:138:0.420:2	0/1:0,148:32:148:1.00:2
chr3	69097140	rs73110228	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,20:31:35:0.571:2	./.
chr3	69151152	rs10489	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,75:29:190:0.395:2	0/1:94,85:31:179:0.475:2	./.	./.
chr3	69153625	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:32:89:0.045:2	./.	./.	./.	./.	./.
chr3	69158231	rs60474520	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,56:30:120:0.467:2	./.	./.
chr3	69168236	rs72924884	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,82:32:192:0.427:2	./.	./.	./.
chr3	69168628	rs111797345	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,78:32:191:0.408:2	./.	./.	./.
chr3	69169116	rs190846774	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,81:32:167:0.485:2	./.	./.	./.	./.	./.	./.	./.
chr3	69230061	rs9831516	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,53:32:55:0.964:2	0/1:0,27:31:27:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,76:31:76:1.00:2	0/1:0,92:31:92:1.00:2	0/1:0,79:31:79:1.00:2	0/1:2,91:33:93:0.978:2	0/1:0,69:32:69:1.00:2	0/1:53,29:31:82:0.354:2
chr3	69230801	rs9836305	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,127:31:127:1.00:2	0/1:0,90:31:90:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,125:31:125:1.00:2	0/1:1,101:31:102:0.990:2	0/1:0,121:31:121:1.00:2	0/1:4,87:31:91:0.956:2	0/1:0,121:31:121:1.00:2	0/1:0,139:32:139:1.00:2	0/1:0,148:32:148:1.00:2	0/1:69,69:32:138:0.500:2
chr3	69244498	rs188780512	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,29:31:64:0.453:2	0/1:27,19:32:46:0.413:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	69245454	rs9310141	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,121:33:121:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,25:33:25:1.00:2	0/1:1,147:33:149:0.993:2	0/1:0,138:32:138:1.00:2	0/1:0,177:32:177:1.00:2	0/1:0,154:32:154:1.00:2	0/1:0,165:32:165:1.00:2	0/1:0,183:33:183:1.00:2	0/1:0,184:32:185:1.00:2	0/1:0,175:32:175:1.00:2
chr3	69246152	rs13059488	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,61:33:62:0.984:2	0/1:0,27:32:27:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,66:32:66:1.00:2	0/1:1,63:32:64:0.984:2	0/1:0,73:32:73:1.00:2	0/1:0,82:33:82:1.00:2	0/1:3,59:32:62:0.952:2	0/1:0,79:33:79:1.00:2	0/1:35,44:32:79:0.557:2	0/1:53,34:32:87:0.391:2
chr3	69265418	rs201203228	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:34:144:0.028:2	./.	./.	./.	./.	./.
chr3	69271032	rs62254461	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,11:30:14:0.786:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	69299185	rs73099842	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:31:12:0.500:2	./.	./.	0/1:0,63:31:63:1.00:2	0/1:5,56:32:61:0.918:2	./.	./.	0/1:24,18:33:42:0.429:2	./.
chr3	69299233	rs4361282	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,4:31:15:0.267:2	./.	./.	./.	./.	./.	./.	./.	0/1:46,50:32:96:0.521:2
chr3	69362605	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:33:88:0.045:2	./.	./.
chr3	69928465	rs200726397	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,16:11:123:0.130:2	0/1:139,20:11:159:0.126:2	0/1:139,13:15:152:0.086:2	0/1:89,8:18:97:0.082:2	0/1:99,12:25:111:0.108:2	0/1:112,8:21:120:0.067:2
chr3	69988279	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:32:76:0.053:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	71161753	rs144347581	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:33:115:0.035:2
chr3	71743025	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,5:31:30:0.167:2	./.	./.	./.	./.	./.	./.	./.
chr3	71745688	rs9877458	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,42:33:89:0.472:2	0/1:28,14:32:42:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,40:32:101:0.396:2
chr3	71823582	rs3796224	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,13:32:34:0.382:2	./.	./.	0/1:112,70:31:182:0.385:2	./.	./.	./.	./.	./.
chr3	72799580	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:32:65:0.062:2	./.	./.	./.
chr3	72799581	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.
chr3	72799703	rs35178407	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:75,57:32:133:0.432:2	0/1:46,43:32:89:0.483:2	./.	./.	0/1:99,48:31:147:0.327:2	./.	./.	./.	./.	./.	./.
chr3	72891461	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:30:52:0.077:2	./.	./.	./.
chr3	72891470	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:33:53:0.075:2	./.	./.	./.
chr3	72891529	rs374678443	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,4:35:32:0.125:2	./.	./.	./.
chr3	73111368	rs2231924	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,36:32:82:0.439:2	0/1:25,26:32:51:0.510:2	0/1:0,8:29:8:1.00:2	0/1:28,40:31:68:0.588:2	0/1:24,21:32:45:0.467:2	./.	./.	0/1:40,26:33:66:0.394:2	0/1:39,46:33:85:0.541:2	0/1:44,29:32:73:0.397:2	./.
chr3	73111809	rs2231926	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,27:28:58:0.474:2	0/1:22,10:27:32:0.313:2	0/1:1,4:29:5:0.800:2	0/1:29,20:29:49:0.408:2	0/1:20,15:27:35:0.429:2	./.	./.	0/1:29,28:28:57:0.491:2	0/1:26,24:30:50:0.480:2	0/1:26,16:30:42:0.381:2	./.
chr3	73111973	rs2231928	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,45:29:123:0.366:2	0/1:45,32:29:77:0.416:2	0/1:0,16:31:16:1.00:2	0/1:89,62:29:151:0.411:2	0/1:54,38:29:92:0.413:2	./.	./.	0/1:94,45:28:139:0.324:2	0/1:117,60:30:177:0.339:2	0/1:60,39:29:99:0.394:2	./.
chr3	73111998	rs1060584	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:77,42:32:119:0.353:2	0/1:47,38:32:85:0.447:2	0/1:0,10:31:10:1.00:2	0/1:74,58:31:132:0.439:2	0/1:50,28:31:78:0.359:2	./.	./.	0/1:79,42:31:121:0.347:2	0/1:113,49:32:162:0.302:2	0/1:59,42:32:101:0.416:2	./.
chr3	73112378	rs7640805	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,40:31:91:0.440:2	0/1:30,23:30:53:0.434:2	0/1:0,9:30:9:1.00:2	0/1:56,48:31:104:0.462:2	0/1:45,43:31:88:0.489:2	./.	./.	0/1:69,47:31:116:0.405:2	0/1:63,43:32:106:0.406:2	0/1:41,47:31:88:0.534:2	./.
chr3	73112863	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,6:31:117:0.051:2	./.	./.	./.	./.	./.
chr3	73112879	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,6:30:130:0.046:2	./.	./.	./.	./.	./.
chr3	73113237	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,7:30:119:0.060:2	./.	./.	./.
chr3	73113283	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,5:32:74:0.068:2	./.	./.	./.
chr3	73113291	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:32:60:0.067:2	./.	./.	./.
chr3	73114003	rs61188513	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,3:30:21:0.143:2	./.	0/1:16,23:32:39:0.590:2	./.	./.
chr3	73432565	rs145452940	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,66:33:163:0.405:2	./.	./.	./.
chr3	73433369	rs3205537	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,28:30:50:0.560:2	./.	./.	0/1:5,19:31:24:0.792:2	0/1:18,21:30:39:0.538:2	0/1:0,53:30:53:1.00:2	0/1:17,17:30:34:0.500:2	./.
chr3	73433494	rs13091636	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,15:29:27:0.556:2	0/1:11,8:25:19:0.421:2	./.	0/1:0,51:30:51:1.00:2	0/1:0,32:29:33:1.00:2	./.	0/1:16,17:29:33:0.515:2	0/1:20,22:30:42:0.524:2	0/1:0,34:30:34:1.00:2	0/1:14,10:28:24:0.417:2	0/1:12,14:29:26:0.538:2
chr3	73450146	rs141385664	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,50:30:118:0.424:2	0/1:34,44:28:78:0.564:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	73453325	rs2291463	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,36:30:87:0.414:2	0/1:25,21:31:46:0.457:2	0/1:8,14:29:22:0.636:2	0/1:0,114:30:114:1.00:2	./.	./.	0/1:56,43:30:99:0.434:2	0/1:0,102:30:102:1.00:2	0/1:1,122:30:123:0.992:2	./.	0/1:56,51:30:107:0.477:2
chr3	74334560	rs143021649	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,77:32:165:0.467:2	./.	./.	./.	./.	./.	0/1:89,85:32:174:0.489:2	./.
chr3	74344356	rs10490832	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:28,23:34:52:0.451:2	0/1:18,8:33:26:0.308:2	0/1:0,10:32:10:1.00:2	./.	0/1:37,24:33:61:0.393:2	./.	./.	./.	./.	0/1:29,36:33:65:0.554:2	./.
chr3	74413676	rs6549590	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:48,39:33:87:0.448:2	0/1:34,19:32:53:0.358:2	./.	0/1:58,45:33:103:0.437:2	0/1:0,81:32:81:1.00:2	0/1:40,66:32:106:0.623:2	0/1:73,41:32:114:0.360:2	./.	./.	0/1:34,43:33:77:0.558:2	0/1:0,125:33:125:1.00:2
chr3	74419065	rs62620465	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,34:32:76:0.447:2	./.	./.	./.	./.
chr3	74570236	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:37:182:0.022:2	./.	./.
chr3	75679937	rs141031386	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,7:32:65:0.108:2	0/1:27,6:32:33:0.182:2	0/1:7,5:33:12:0.417:2	0/1:41,20:31:61:0.328:2	0/1:44,11:31:55:0.200:2	0/1:73,9:29:82:0.110:2	0/1:96,6:33:102:0.059:2	0/1:97,11:29:108:0.102:2	0/1:106,17:31:123:0.138:2	0/1:37,13:31:50:0.260:2	0/1:85,7:32:92:0.076:2
chr3	75679944	rs201399352	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,16:33:63:0.254:2	0/1:26,8:33:34:0.235:2	0/1:6,7:30:13:0.538:2	0/1:58,5:32:63:0.079:2	0/1:49,7:32:56:0.125:2	0/1:56,22:32:78:0.282:2	0/1:82,15:33:97:0.155:2	0/1:89,23:32:112:0.205:2	0/1:102,20:33:122:0.164:2	0/1:40,7:33:47:0.149:2	0/1:62,24:31:86:0.279:2
chr3	75679958	rs200114452	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:55,4:31:59:0.068:2	0/1:33,7:33:40:0.175:2	./.	0/1:51,11:32:62:0.177:2	0/1:42,5:31:48:0.106:2	0/1:65,4:29:69:0.058:2	0/1:78,8:33:86:0.093:2	0/1:103,11:28:114:0.096:2	0/1:102,10:33:112:0.089:2	0/1:44,8:33:52:0.154:2	./.
chr3	75679963	rs201125883	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:57,6:31:63:0.095:2	0/1:36,4:33:40:0.100:2	./.	./.	0/1:31,16:31:47:0.340:2	0/1:63,5:30:68:0.074:2	./.	0/1:89,24:31:113:0.212:2	0/1:79,19:33:98:0.194:2	0/1:47,6:32:53:0.113:2	0/1:66,12:29:78:0.154:2
chr3	75679973	rs183720508	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,11:31:64:0.172:2	0/1:34,8:33:42:0.190:2	0/1:8,3:31:11:0.273:2	0/1:44,21:32:65:0.323:2	0/1:37,7:31:44:0.159:2	./.	0/1:68,9:33:77:0.117:2	0/1:104,11:31:115:0.096:2	0/1:83,10:33:93:0.108:2	0/1:43,11:30:54:0.204:2	./.
chr3	75679993	rs202177109	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:52,5:32:57:0.088:2	0/1:37,3:33:40:0.075:2	./.	./.	0/1:29,8:31:37:0.216:2	0/1:48,6:31:54:0.111:2	./.	0/1:83,20:31:103:0.194:2	0/1:70,18:32:88:0.205:2	0/1:49,5:31:54:0.093:2	0/1:64,6:32:70:0.086:2
chr3	75680010	rs75174508	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:42,7:27:49:0.143:2	0/1:27,5:26:32:0.156:2	./.	0/1:45,15:29:60:0.250:2	./.	./.	0/1:49,9:29:58:0.155:2	0/1:83,7:26:90:0.078:2	0/1:67,5:28:72:0.069:2	0/1:35,10:28:45:0.222:2	./.
chr3	75713555	rs201766868	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:120,11:30:131:0.084:2	0/1:76,11:31:87:0.126:2	./.	0/1:126,7:32:133:0.053:2	0/1:132,6:31:138:0.043:2	0/1:138,9:29:147:0.061:2	0/1:130,7:32:137:0.051:2	0/1:130,6:31:137:0.044:2	0/1:135,7:34:142:0.049:2	0/1:134,6:33:140:0.043:2	0/1:115,13:32:128:0.102:2
chr3	75713564	rs143803036	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:40,91:30:131:0.695:2	0/1:22,57:28:79:0.722:2	0/1:22,12:30:34:0.353:2	./.	0/1:14,92:29:106:0.868:2	0/1:94,42:29:136:0.309:2	0/1:71,47:28:118:0.398:2	0/1:65,49:29:114:0.430:2	./.	0/1:80,46:28:126:0.365:2	0/1:82,40:29:122:0.328:2
chr3	75713566	rs116151319	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:95,36:31:131:0.275:2	0/1:58,21:32:79:0.266:2	0/1:27,6:29:33:0.182:2	0/1:87,20:30:107:0.187:2	0/1:95,14:32:109:0.128:2	0/1:100,31:31:131:0.237:2	0/1:94,20:32:114:0.175:2	0/1:92,20:31:112:0.179:2	0/1:105,18:33:123:0.146:2	0/1:104,23:27:127:0.181:2	0/1:90,31:33:121:0.256:2
chr3	75713618	rs150902075	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:138,24:31:162:0.148:2	0/1:78,12:32:90:0.133:2	0/1:20,3:31:23:0.130:2	0/1:109,25:32:134:0.187:2	0/1:89,10:31:99:0.101:2	0/1:119,22:31:142:0.156:2	0/1:83,12:31:95:0.126:2	0/1:122,24:31:146:0.164:2	0/1:124,8:30:132:0.061:2	0/1:136,25:32:161:0.155:2	0/1:143,21:31:164:0.128:2
chr3	75713654	rs144674412	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:157,38:33:195:0.195:2	0/1:94,24:32:118:0.203:2	0/1:25,5:31:30:0.167:2	0/1:143,54:33:197:0.274:2	0/1:120,25:32:145:0.172:2	0/1:153,35:33:188:0.186:2	0/1:140,28:32:168:0.167:2	0/1:152,41:31:193:0.212:2	0/1:169,26:34:195:0.133:2	0/1:158,39:33:197:0.198:2	0/1:163,31:32:194:0.160:2
chr3	75713669	rs142642813	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:151,40:30:191:0.209:2	0/1:105,26:30:131:0.198:2	0/1:25,7:29:32:0.219:2	0/1:145,51:31:196:0.260:2	0/1:132,27:31:159:0.170:2	0/1:162,30:30:192:0.156:2	0/1:155,29:30:184:0.158:2	0/1:145,45:31:190:0.237:2	0/1:159,26:32:185:0.141:2	0/1:152,42:30:194:0.216:2	0/1:146,32:28:179:0.180:2
chr3	75713980	rs115516351	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,6:34:117:0.052:2	./.	0/1:95,8:32:103:0.078:2	0/1:83,5:28:88:0.057:2	./.	0/1:91,9:33:100:0.090:2	0/1:61,4:34:65:0.062:2	./.
chr3	75714010	rs373472815	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:107,5:31:112:0.045:2	0/1:78,4:32:82:0.049:2	./.	./.	0/1:118,18:32:136:0.132:2	0/1:180,13:33:193:0.067:2	0/1:165,13:32:178:0.073:2	0/1:172,18:30:190:0.095:2	0/1:157,14:34:171:0.082:2	0/1:151,6:30:157:0.038:2	0/1:146,9:33:155:0.058:2
chr3	75714034	rs199810415	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:134,13:32:148:0.088:2	0/1:95,10:32:105:0.095:2	./.	0/1:161,25:32:187:0.134:2	0/1:158,23:31:181:0.127:2	0/1:163,27:32:190:0.142:2	0/1:173,17:31:190:0.089:2	0/1:172,21:30:193:0.109:2	0/1:183,9:30:192:0.047:2	0/1:175,20:30:195:0.103:2	0/1:164,16:33:180:0.089:2
chr3	75714041	rs200186433	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:139,13:31:152:0.086:2	0/1:99,10:32:109:0.092:2	./.	./.	0/1:139,39:31:178:0.219:2	0/1:173,16:29:189:0.085:2	0/1:171,15:30:186:0.081:2	0/1:156,23:30:179:0.128:2	0/1:165,27:31:192:0.141:2	0/1:179,14:32:193:0.073:2	0/1:164,14:30:178:0.079:2
chr3	75714264	rs201176988	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:130,30:32:160:0.188:2	0/1:113,34:31:147:0.231:2	0/1:18,7:31:25:0.280:2	0/1:145,21:30:166:0.127:2	0/1:128,15:30:143:0.105:2	0/1:129,21:30:150:0.140:2	0/1:143,14:31:157:0.089:2	0/1:135,27:31:162:0.167:2	0/1:126,21:32:147:0.143:2	0/1:151,17:32:168:0.101:2	0/1:118,31:32:149:0.208:2
chr3	75714298	rs114375735	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,87:29:143:0.608:2	0/1:52,89:28:141:0.631:2	0/1:15,44:29:59:0.746:2	0/1:68,65:29:133:0.489:2	0/1:86,73:28:159:0.459:2	0/1:53,105:29:158:0.665:2	0/1:66,84:28:150:0.560:2	0/1:48,108:28:156:0.692:2	0/1:65,68:29:133:0.511:2	0/1:76,84:29:160:0.525:2	0/1:55,93:29:148:0.628:2
chr3	75714311	rs200251808	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:126,22:30:148:0.149:2	0/1:133,18:32:151:0.119:2	0/1:66,10:29:76:0.132:2	0/1:127,21:32:148:0.142:2	0/1:140,15:29:155:0.097:2	0/1:117,22:31:139:0.158:2	0/1:139,12:31:151:0.079:2	0/1:129,30:31:159:0.189:2	0/1:115,17:32:132:0.129:2	0/1:124,30:31:154:0.195:2	0/1:122,19:31:141:0.135:2
chr3	75714337	rs150591814	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,87:32:135:0.644:2	0/1:50,61:32:111:0.550:2	0/1:17,54:31:71:0.761:2	0/1:56,77:32:133:0.579:2	0/1:62,63:32:125:0.504:2	0/1:33,98:32:131:0.748:2	0/1:51,66:32:117:0.564:2	0/1:40,99:32:139:0.712:2	0/1:43,71:33:114:0.623:2	0/1:58,92:33:150:0.613:2	0/1:45,82:32:127:0.646:2
chr3	75714345	rs202087446	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,40:30:131:0.305:2	0/1:87,27:31:114:0.237:2	0/1:50,21:29:71:0.296:2	0/1:88,43:29:131:0.328:2	0/1:89,25:31:114:0.219:2	0/1:106,27:29:133:0.203:2	0/1:89,26:30:115:0.226:2	0/1:116,30:30:146:0.205:2	0/1:100,19:31:119:0.160:2	0/1:105,46:30:151:0.305:2	0/1:101,32:30:133:0.241:2
chr3	75714702	rs150428518	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,55:32:86:0.640:2	0/1:23,50:33:73:0.685:2	0/1:5,11:32:17:0.688:2	0/1:30,53:33:83:0.639:2	0/1:32,30:32:62:0.484:2	0/1:22,98:32:120:0.817:2	0/1:36,47:32:83:0.566:2	0/1:47,89:33:136:0.654:2	0/1:45,34:33:79:0.430:2	0/1:39,79:32:118:0.669:2	0/1:36,82:32:118:0.695:2
chr3	75714709	rs148233498	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:91,4:33:95:0.042:2	0/1:68,12:33:80:0.150:2	./.	0/1:81,10:32:91:0.110:2	0/1:64,6:30:70:0.086:2	0/1:114,14:31:128:0.109:2	0/1:81,15:31:96:0.156:2	0/1:138,8:32:146:0.055:2	0/1:76,7:33:83:0.084:2	0/1:104,23:30:127:0.181:2	0/1:112,11:32:123:0.089:2
chr3	75714771	rs199597773	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:130,7:31:137:0.051:2	0/1:63,8:31:71:0.113:2	./.	0/1:116,9:29:125:0.072:2	0/1:70,5:31:75:0.067:2	0/1:144,8:29:152:0.053:2	0/1:100,11:28:111:0.099:2	0/1:123,6:32:129:0.047:2	0/1:94,8:32:102:0.078:2	0/1:148,13:30:161:0.081:2	0/1:146,13:31:159:0.082:2
chr3	75714788	rs115350381	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:109,23:29:133:0.174:2	0/1:52,16:29:68:0.235:2	./.	0/1:116,21:29:137:0.153:2	0/1:78,9:30:87:0.103:2	0/1:132,7:29:139:0.050:2	0/1:91,23:29:114:0.202:2	0/1:107,18:28:125:0.144:2	0/1:93,14:27:107:0.131:2	0/1:137,15:27:152:0.099:2	0/1:112,27:29:139:0.194:2
chr3	75714807	rs199780042	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,26:31:117:0.222:2	0/1:58,9:31:67:0.134:2	0/1:12,6:31:18:0.333:2	0/1:109,16:27:125:0.128:2	0/1:86,11:31:97:0.113:2	0/1:108,23:29:131:0.176:2	0/1:114,12:30:126:0.095:2	0/1:100,14:31:115:0.123:2	0/1:114,6:31:120:0.050:2	0/1:105,26:31:131:0.198:2	0/1:90,30:30:120:0.250:2
chr3	75714809	rs117327874	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:103,9:29:112:0.080:2	0/1:60,8:31:68:0.118:2	./.	0/1:106,11:31:118:0.094:2	0/1:91,6:32:97:0.062:2	./.	0/1:110,10:31:120:0.083:2	0/1:101,5:31:106:0.047:2	0/1:110,4:32:115:0.035:2	0/1:118,8:31:128:0.063:2	0/1:105,6:28:112:0.054:2
chr3	75714819	rs115599848	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:104,4:33:108:0.037:2	0/1:68,4:33:72:0.056:2	./.	./.	./.	./.	0/1:117,5:32:122:0.041:2	0/1:102,4:33:106:0.038:2	./.	./.	./.
chr3	75714825	rs115693429	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:84,14:32:98:0.143:2	0/1:66,5:33:71:0.070:2	0/1:15,3:33:18:0.167:2	0/1:92,11:31:103:0.107:2	0/1:96,6:33:102:0.059:2	0/1:95,13:32:108:0.120:2	0/1:112,9:34:121:0.074:2	0/1:87,10:33:97:0.103:2	0/1:111,4:36:115:0.035:2	0/1:100,16:33:116:0.138:2	0/1:74,21:30:95:0.221:2
chr3	75714835	rs150744016	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:31:100:0.040:2	./.	./.	./.	./.	./.
chr3	75714840	rs200756071	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:84,4:32:88:0.045:2	./.	./.	0/1:95,9:31:104:0.087:2	0/1:90,4:32:94:0.043:2	0/1:89,11:35:100:0.110:2	0/1:111,7:34:118:0.059:2	0/1:86,10:33:96:0.104:2	./.	0/1:90,10:31:100:0.100:2	0/1:79,13:30:92:0.141:2
chr3	75714853	rs199889568	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,5:32:114:0.044:2	./.	0/1:108,10:32:118:0.085:2	./.	0/1:101,7:33:108:0.065:2	./.	0/1:107,5:34:112:0.045:2	0/1:94,4:32:98:0.041:2
chr3	75714895	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:134,12:32:146:0.082:2	0/1:123,7:32:130:0.054:2	0/1:27,4:32:31:0.129:2	0/1:133,7:31:140:0.050:2	0/1:107,7:32:114:0.061:2	0/1:131,14:31:145:0.097:2	0/1:131,5:28:136:0.037:2	0/1:122,11:32:133:0.083:2	0/1:118,12:32:131:0.092:2	0/1:133,10:31:143:0.070:2	0/1:106,8:32:114:0.070:2
chr3	75714898	rs146305022	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:89,59:32:148:0.399:2	0/1:92,35:32:127:0.276:2	0/1:20,10:31:30:0.333:2	0/1:94,49:32:143:0.343:2	0/1:74,39:32:113:0.345:2	0/1:105,41:31:146:0.281:2	0/1:86,46:31:133:0.348:2	0/1:89,46:32:135:0.341:2	0/1:79,48:32:127:0.378:2	0/1:98,43:32:141:0.305:2	0/1:70,48:32:118:0.407:2
chr3	75714917	rs146351690	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:148,11:31:159:0.069:2	0/1:109,15:31:124:0.121:2	0/1:28,4:30:32:0.125:2	0/1:131,19:30:150:0.127:2	0/1:116,7:31:123:0.057:2	0/1:135,26:30:161:0.161:2	0/1:137,12:30:149:0.081:2	0/1:144,13:30:157:0.083:2	0/1:149,15:30:164:0.091:2	0/1:134,19:30:153:0.124:2	0/1:133,8:30:141:0.057:2
chr3	75714929	rs148715408	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:148,18:32:166:0.108:2	0/1:116,19:31:135:0.141:2	0/1:25,5:31:30:0.167:2	0/1:140,25:31:166:0.152:2	0/1:130,10:32:140:0.071:2	0/1:138,33:30:172:0.193:2	0/1:141,15:31:156:0.096:2	0/1:155,14:32:169:0.083:2	0/1:156,15:32:171:0.088:2	0/1:142,22:30:164:0.134:2	0/1:136,12:32:148:0.081:2
chr3	75714950	rs147607693	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:150,22:31:172:0.128:2	0/1:122,18:32:140:0.129:2	0/1:26,4:31:30:0.133:2	0/1:137,30:30:167:0.180:2	0/1:164,14:30:178:0.079:2	0/1:146,29:31:175:0.166:2	0/1:153,19:31:172:0.110:2	0/1:158,15:31:173:0.087:2	0/1:165,16:32:181:0.088:2	0/1:140,27:31:167:0.162:2	0/1:145,14:31:159:0.088:2
chr3	75714971	rs200420264	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:120,54:31:174:0.310:2	0/1:109,45:32:154:0.292:2	0/1:19,6:31:25:0.240:2	./.	0/1:99,79:31:178:0.444:2	0/1:135,30:31:165:0.182:2	0/1:153,25:30:178:0.140:2	0/1:142,31:31:173:0.179:2	./.	0/1:142,27:30:169:0.160:2	0/1:137,27:32:164:0.165:2
chr3	75714976	rs142843044	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:90,87:30:177:0.492:2	0/1:66,88:31:154:0.571:2	0/1:11,14:29:25:0.560:2	0/1:76,73:30:149:0.490:2	0/1:102,77:29:179:0.430:2	0/1:72,89:29:161:0.553:2	0/1:79,94:29:173:0.543:2	0/1:79,89:30:168:0.530:2	0/1:74,101:30:175:0.577:2	0/1:90,77:29:167:0.461:2	0/1:70,92:30:163:0.568:2
chr3	75714980	rs201898295	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:151,25:31:177:0.142:2	0/1:130,15:31:145:0.103:2	0/1:22,5:31:27:0.185:2	0/1:139,28:29:167:0.168:2	0/1:172,12:30:184:0.065:2	0/1:158,20:30:178:0.112:2	0/1:164,14:30:178:0.079:2	0/1:160,15:31:175:0.086:2	0/1:170,10:31:180:0.056:2	0/1:134,23:30:157:0.146:2	0/1:156,11:32:167:0.066:2
chr3	75715016	rs201684165	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,3:33:28:0.107:2	./.	./.	./.	0/1:148,42:33:190:0.221:2	./.	0/1:147,28:34:175:0.160:2	./.	./.
chr3	75715033	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:144,41:31:185:0.222:2	0/1:125,25:32:150:0.167:2	0/1:22,6:32:28:0.214:2	0/1:138,45:32:183:0.246:2	0/1:147,36:32:183:0.197:2	0/1:153,45:32:198:0.227:2	0/1:149,43:32:192:0.224:2	0/1:143,48:31:191:0.251:2	0/1:156,21:32:177:0.119:2	0/1:118,43:33:161:0.267:2	0/1:133,33:31:166:0.199:2
chr3	75715087	rs146985340	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:114,53:33:167:0.317:2	0/1:59,35:33:94:0.372:2	0/1:15,9:32:24:0.375:2	0/1:140,33:32:173:0.191:2	0/1:126,35:31:161:0.217:2	0/1:110,41:31:151:0.272:2	0/1:152,26:31:178:0.146:2	0/1:133,32:32:165:0.194:2	0/1:130,33:33:163:0.202:2	0/1:95,31:31:126:0.246:2	0/1:123,37:33:160:0.231:2
chr3	75715099	rs148030993	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:103,59:31:162:0.364:2	0/1:50,27:31:77:0.351:2	0/1:13,8:31:21:0.381:2	0/1:134,37:31:171:0.216:2	0/1:119,23:29:142:0.162:2	0/1:105,33:29:138:0.239:2	0/1:133,38:32:171:0.222:2	0/1:121,29:30:150:0.193:2	0/1:117,33:32:150:0.220:2	0/1:81,30:31:111:0.270:2	0/1:108,39:29:147:0.265:2
chr3	75715104	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,9:31:153:0.059:2	./.	./.
chr3	75715118	rs143462620	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:121,32:29:153:0.209:2	0/1:69,5:31:74:0.068:2	0/1:20,8:30:28:0.286:2	0/1:113,31:30:144:0.215:2	0/1:106,22:28:129:0.172:2	0/1:97,37:28:134:0.276:2	0/1:120,26:29:146:0.178:2	0/1:104,31:29:135:0.230:2	0/1:127,22:32:149:0.148:2	0/1:79,25:30:104:0.240:2	0/1:104,28:30:132:0.212:2
chr3	75715124	rs138384482	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:120,29:31:149:0.195:2	0/1:66,4:33:70:0.057:2	0/1:22,7:31:29:0.241:2	0/1:116,28:30:144:0.194:2	0/1:101,20:28:123:0.165:2	0/1:99,35:29:134:0.261:2	0/1:118,22:29:140:0.157:2	0/1:107,28:31:135:0.207:2	0/1:128,19:31:147:0.129:2	0/1:82,20:31:102:0.196:2	0/1:108,27:31:135:0.200:2
chr3	75786031	rs200852928	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:15,4:32:19:0.211:2	0/1:13,4:31:17:0.235:2	0/1:1,2:32:3:0.667:2	./.	0/1:17,6:32:24:0.261:2	./.	0/1:31,3:32:34:0.088:2	0/1:20,7:31:27:0.259:2	0/1:27,6:29:33:0.182:2	0/1:32,4:32:36:0.111:2	0/1:32,3:32:35:0.086:2
chr3	75786036	rs202029173	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,6:31:24:0.250:2	0/1:16,5:30:21:0.238:2	./.	./.	0/1:20,9:32:29:0.310:2	0/1:21,4:34:25:0.160:2	0/1:29,4:32:33:0.121:2	0/1:25,13:32:38:0.342:2	0/1:30,8:33:38:0.211:2	0/1:35,6:32:41:0.146:2	0/1:36,6:32:42:0.143:2
chr3	75786073	rs140806462	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:35,34:33:69:0.493:2	0/1:18,11:32:29:0.379:2	0/1:1,7:33:8:0.875:2	./.	0/1:26,34:33:60:0.567:2	0/1:60,22:33:82:0.268:2	0/1:49,17:33:66:0.258:2	0/1:48,43:33:91:0.473:2	0/1:57,27:34:85:0.321:2	0/1:55,17:33:72:0.236:2	0/1:72,30:33:102:0.294:2
chr3	75786080	rs144586950	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:42,36:33:78:0.462:2	0/1:16,18:32:34:0.529:2	./.	./.	0/1:41,24:32:65:0.369:2	0/1:61,30:32:92:0.330:2	0/1:50,22:31:72:0.306:2	0/1:91,19:33:110:0.173:2	./.	0/1:57,20:33:77:0.260:2	0/1:90,29:34:119:0.244:2
chr3	75786175	rs144353922	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:43,14:32:57:0.246:2	0/1:12,7:32:19:0.368:2	./.	./.	0/1:19,17:30:36:0.472:2	0/1:48,15:29:63:0.238:2	./.	0/1:42,13:31:55:0.236:2	0/1:45,16:31:61:0.262:2	0/1:20,7:30:27:0.259:2	0/1:64,20:30:84:0.238:2
chr3	75786202	rs148347794	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:33,4:33:37:0.108:2	./.	./.	./.	0/1:17,5:32:22:0.227:2	./.	./.	./.	./.	./.	./.
chr3	75786203	rs143166925	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:34,4:32:38:0.105:2	./.	./.	./.	0/1:17,5:31:22:0.227:2	./.	./.	./.	./.	./.	./.
chr3	75786221	rs139945686	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:30:43:0.093:2
chr3	75786230	rs149559986	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,27:32:31:0.871:2	0/1:2,15:32:17:0.882:2	./.	./.	0/1:2,6:31:9:0.750:2	0/1:14,15:32:29:0.517:2	0/1:20,8:32:28:0.286:2	0/1:12,7:32:19:0.368:2	./.	0/1:6,6:33:12:0.500:2	0/1:37,4:32:41:0.098:2
chr3	75786251	rs139644424	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:30,4:32:34:0.118:2	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	0/1:15,6:31:21:0.286:2	./.	0/1:23,4:32:27:0.148:2	./.	0/1:31,11:32:42:0.262:2
chr3	75786252	rs140641854	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:30,4:33:34:0.118:2	./.	./.	./.	0/1:7,4:33:11:0.364:2	./.	0/1:14,6:32:20:0.300:2	./.	0/1:23,4:32:27:0.148:2	./.	0/1:32,11:32:43:0.256:2
chr3	75786264	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,5:29:51:0.098:2
chr3	75786355	rs151138057	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:23,3:31:26:0.115:2	./.	./.	./.	./.	./.	./.	0/1:13,4:31:17:0.235:2	./.	./.	0/1:22,4:31:26:0.154:2
chr3	75786440	rs145944373	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,29:32:29:1.00:2	0/1:1,21:32:22:0.955:2	./.	./.	0/1:0,21:32:21:1.00:2	0/1:7,18:30:25:0.720:2	0/1:14,10:31:24:0.417:2	0/1:16,17:31:33:0.515:2	./.	0/1:10,11:32:21:0.524:2	0/1:12,21:32:33:0.636:2
chr3	75786670	rs112822201	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,3:33:17:0.176:2	./.
chr3	75786681	rs111677009	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,4:34:10:0.400:2	0/1:14,3:32:17:0.176:2
chr3	75786737	rs78297221	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:5,9:33:14:0.643:2	./.	0/1:0,2:31:2:1.00:2	./.	0/1:8,4:32:12:0.333:2	0/1:8,4:31:12:0.333:2	./.	0/1:7,3:33:10:0.300:2	0/1:5,5:33:10:0.500:2	0/1:6,3:33:9:0.333:2	0/1:10,6:32:16:0.375:2
chr3	75786748	rs112332186	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,12:32:20:0.600:2	./.	./.	./.	0/1:9,5:32:14:0.357:2	0/1:9,6:31:15:0.400:2	./.	./.	0/1:8,7:32:15:0.467:2	0/1:8,4:31:12:0.333:2	0/1:11,9:32:20:0.450:2
chr3	75786753	rs3009020	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,8:31:21:0.381:2	0/1:2,6:31:8:0.750:2	./.	0/1:0,3:31:3:1.00:2	0/1:5,9:31:14:0.643:2	0/1:7,9:31:16:0.563:2	0/1:11,5:32:16:0.313:2	0/1:4,4:30:8:0.500:2	./.	0/1:5,7:30:12:0.583:2	0/1:8,11:32:19:0.579:2
chr3	75786832	rs11122676	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,23:32:37:0.622:2	0/1:11,9:33:20:0.450:2	./.	./.	0/1:16,22:31:39:0.579:2	0/1:10,3:31:13:0.231:2	0/1:18,11:32:29:0.379:2	0/1:10,12:32:22:0.545:2	./.	0/1:6,12:32:18:0.667:2	0/1:12,22:32:34:0.647:2
chr3	75786833	rs139448820	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,14:32:38:0.368:2	0/1:11,11:32:22:0.500:2	./.	./.	0/1:23,17:30:40:0.425:2	0/1:3,10:32:13:0.769:2	./.	0/1:14,8:33:22:0.364:2	0/1:21,16:32:37:0.432:2	0/1:13,6:32:19:0.316:2	0/1:24,12:32:36:0.333:2
chr3	75786845	rs62250105	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,18:34:42:0.429:2	0/1:12,13:31:25:0.520:2	./.	./.	0/1:23,18:32:41:0.439:2	0/1:2,10:32:12:0.833:2	./.	0/1:17,13:32:30:0.433:2	0/1:21,18:32:39:0.462:2	0/1:13,6:32:19:0.316:2	0/1:24,13:33:37:0.351:2
chr3	75786888	rs1615736	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:31,32:32:63:0.508:2	0/1:21,19:33:40:0.475:2	0/1:1,2:31:3:0.667:2	./.	0/1:25,18:31:43:0.419:2	0/1:4,10:32:14:0.714:2	./.	0/1:27,37:32:64:0.578:2	0/1:25,26:32:51:0.510:2	0/1:23,12:32:35:0.343:2	0/1:29,28:32:57:0.491:2
chr3	75786910	rs200631700	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:60,21:33:81:0.259:2	0/1:34,6:32:40:0.150:2	0/1:4,3:34:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	0/1:56,25:33:81:0.309:2
chr3	75786965	rs112478715	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:34:73:0.055:2	./.	./.
chr3	75787049	rs201485350	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,16:32:43:0.372:2	0/1:20,4:32:24:0.167:2	./.	./.	./.	0/1:16,6:31:22:0.273:2	0/1:12,3:31:15:0.200:2	0/1:16,10:32:27:0.385:2	0/1:22,12:32:34:0.353:2	./.	0/1:17,16:30:33:0.485:2
chr3	75787057	rs145650973	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:23,12:32:35:0.343:2	0/1:20,4:32:24:0.167:2	./.	0/1:13,3:30:16:0.188:2	./.	0/1:13,6:30:19:0.316:2	0/1:11,3:31:14:0.214:2	0/1:15,11:31:26:0.423:2	0/1:23,12:31:35:0.343:2	./.	0/1:20,14:29:34:0.412:2
chr3	75787169	rs146848254	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:32,4:34:36:0.111:2	0/1:18,3:32:21:0.143:2	./.	./.	0/1:20,5:31:25:0.200:2	0/1:30,3:31:33:0.091:2	./.	0/1:35,7:33:42:0.167:2	0/1:35,5:31:40:0.125:2	./.	./.
chr3	75787186	rs150410646	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,3:32:23:0.130:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	75787199	rs138214171	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,3:32:42:0.071:2	./.	0/1:42,3:34:45:0.067:2	./.	./.	./.
chr3	75787424	rs144153022	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,4:32:24:0.167:2	./.
chr3	75787455	rs201246393	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,4:29:37:0.108:2	./.
chr3	75787576	rs141348932	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,6:30:33:0.182:2	0/1:15,4:27:19:0.211:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,3:31:25:0.120:2
chr3	75787583	rs144348996	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:26,6:30:32:0.188:2	0/1:13,5:33:18:0.278:2	./.	./.	./.	./.	./.	0/1:16,3:29:19:0.158:2	0/1:27,3:35:30:0.100:2	./.	0/1:21,3:32:24:0.125:2
chr3	75787584	rs151027881	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,3:33:29:0.103:2	./.	./.
chr3	75787620	rs145606249	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,10:29:32:0.313:2	0/1:11,8:30:19:0.421:2	./.	./.	0/1:14,6:30:20:0.300:2	0/1:15,3:30:18:0.167:2	./.	0/1:11,4:28:15:0.267:2	0/1:26,11:31:37:0.297:2	0/1:18,4:31:22:0.182:2	0/1:15,11:27:26:0.423:2
chr3	75787702	rs77377261	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,11:33:14:0.786:2	0/1:0,6:31:6:1.00:2	./.	./.	0/1:3,6:28:9:0.667:2	0/1:3,8:33:11:0.727:2	./.	0/1:0,6:30:6:1.00:2	0/1:11,10:34:21:0.476:2	0/1:2,13:33:15:0.867:2	0/1:1,8:33:9:0.889:2
chr3	75787728	rs75074846	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:31:7:1.00:2	0/1:0,5:31:5:1.00:2	./.	./.	0/1:0,5:31:5:1.00:2	0/1:0,2:31:2:1.00:2	./.	0/1:0,5:31:5:1.00:2	0/1:9,5:31:14:0.357:2	0/1:0,10:32:10:1.00:2	0/1:0,4:28:4:1.00:2
chr3	75787739	rs141238251	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:31:6:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.	0/1:0,5:32:5:1.00:2	0/1:0,2:31:2:1.00:2	./.	0/1:0,2:32:2:1.00:2	0/1:12,3:32:15:0.200:2	0/1:0,7:32:7:1.00:2	0/1:0,4:29:4:1.00:2
chr3	75787770	rs74873974	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:31:10:0.300:2	./.	./.	./.	./.	./.
chr3	75787794	rs75467043	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	./.	./.	0/1:18,3:31:21:0.143:2	./.	0/1:23,6:32:29:0.207:2	./.	./.	0/1:21,4:32:25:0.160:2
chr3	75787809	rs142370851	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,21:33:23:0.913:2	0/1:4,9:33:13:0.692:2	./.	./.	0/1:1,8:31:9:0.889:2	0/1:11,14:32:25:0.560:2	0/1:23,8:29:31:0.258:2	0/1:23,7:32:30:0.233:2	./.	0/1:11,9:33:20:0.450:2	0/1:12,17:33:29:0.586:2
chr3	75787840	rs138029418	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,3:32:13:0.231:2	./.	./.	./.	./.	./.	0/1:35,4:30:39:0.103:2	./.	./.	./.
chr3	75788010	rs151311432	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:32:3:1.00:2	0/1:0,2:30:2:1.00:2	./.	./.	0/1:1,3:31:4:0.750:2	0/1:0,2:34:2:1.00:2	./.	./.	./.	0/1:0,2:33:2:1.00:2	0/1:0,4:28:4:1.00:2
chr3	75788292	rs149444593	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,3:32:25:0.120:2	./.	./.	./.	./.	./.	./.
chr3	75788382	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,5:32:14:0.357:2	0/1:17,5:31:22:0.227:2	./.	0/1:17,4:30:21:0.190:2	./.	./.	0/1:9,4:32:13:0.308:2
chr3	75788390	.	A	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	0/1:8,5:32:13:0.385:2	0/1:15,5:32:20:0.250:2	./.	0/1:16,4:29:20:0.200:2	./.	./.	0/1:7,5:32:12:0.417:2
chr3	75788394	rs201974353	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	0/1:7,5:32:12:0.417:2	0/1:15,4:30:19:0.211:2	./.	0/1:15,4:32:19:0.211:2	0/1:16,3:33:19:0.158:2	./.	0/1:7,5:32:12:0.417:2
chr3	75790427	rs199946555	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:33:6:0.500:2	./.	./.	./.	./.	./.
chr3	75790448	rs141704469	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:31:5:0.600:2	0/1:28,4:34:32:0.125:2	0/1:0,4:32:4:1.00:2	./.	./.	./.
chr3	75790466	rs78571006	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.
chr3	75790513	rs149568659	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.
chr3	75790516	rs201105907	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2
chr3	77645882	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,3:36:99:0.030:2	./.	./.	./.	./.	./.	./.
chr3	77651422	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.	./.	./.	./.
chr3	78663949	rs4443127	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,9:27:28:0.321:2	./.	./.	./.	./.
chr3	78683125	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:34:198:0.020:2	./.	./.
chr3	78685024	rs35456279	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,72:31:169:0.429:2	./.	./.	./.	./.	./.	./.
chr3	78688958	rs35926083	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:180,4:33:184:0.022:2	./.	0/1:117,73:31:190:0.384:2	./.	./.	./.	./.
chr3	78700901	rs6795556	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:32,21:31:53:0.396:2	0/1:26,17:31:43:0.395:2	./.	0/1:41,19:31:60:0.317:2	./.	./.	./.	./.	./.	0/1:1,52:32:53:0.981:2	0/1:49,30:32:79:0.380:2
chr3	78717045	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:34:195:0.021:2
chr3	78717343	rs2271151	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:35,34:32:69:0.493:2	0/1:31,21:32:52:0.404:2	./.	./.	./.	./.	./.	./.	./.	0/1:0,80:32:80:1.00:2	0/1:64,52:33:116:0.448:2
chr3	81627175	rs2228389	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:31:5:0.800:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	81635303	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,4:33:23:0.174:2	./.
chr3	81643167	rs2172397	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:33:77:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,64:33:64:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,71:34:71:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,98:33:98:1.00:2
chr3	81698130	rs2229519	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:2,7:28:9:0.778:2	./.	0/1:6,6:29:12:0.500:2	./.	./.	./.	0/1:0,12:29:12:1.00:2	0/1:7,11:28:18:0.611:2	0/1:12,12:29:24:0.500:2	0/1:16,8:26:24:0.333:2
chr3	81699010	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:32:184:0.022:2	./.
chr3	81720009	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:32:44:0.091:2	./.	./.	./.	./.	./.
chr3	85961556	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:32:182:0.022:2	./.	./.	./.
chr3	87018099	rs79345443	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,36:32:86:0.419:2	./.	./.	./.	./.
chr3	87276699	rs2279720	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,35:32:82:0.427:2	./.	./.	./.	./.	./.
chr3	87295049	rs11540913	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,24:33:45:0.533:2	0/1:12,14:33:26:0.538:2	0/1:0,3:34:3:1.00:2	0/1:0,57:33:57:1.00:2	0/1:21,22:31:43:0.512:2	0/1:0,44:32:44:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,40:33:40:1.00:2	0/1:29,40:32:69:0.580:2
chr3	87299075	rs1044499	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,34:32:79:0.430:2	./.	./.	./.	./.	./.
chr3	88040062	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2	./.
chr3	88041005	rs1931	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	88041280	rs9310060	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,12:32:17:0.706:2
chr3	88041650	rs2016224	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:31:38:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,7:31:7:1.00:2	0/1:19,23:30:42:0.548:2	0/1:22,18:30:40:0.450:2	0/1:0,43:29:43:1.00:2	0/1:18,12:29:30:0.400:2	0/1:36,24:31:60:0.400:2	./.	0/1:33,17:32:50:0.340:2	0/1:48,31:31:79:0.392:2
chr3	88189341	rs7653652	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:33:81:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,7:33:7:1.00:2	0/1:1,89:32:90:0.989:2	0/1:0,64:32:64:1.00:2	0/1:0,70:32:70:1.00:2	0/1:23,20:32:43:0.465:2	0/1:0,72:32:72:1.00:2	0/1:38,63:33:101:0.624:2	0/1:38,35:32:73:0.479:2	0/1:0,142:32:142:1.00:2
chr3	88190112	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:28:79:0.051:2	./.	./.	./.
chr3	88190750	rs112565258	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,73:32:137:0.533:2
chr3	88190768	rs7432826	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:32:77:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,26:32:26:1.00:2	0/1:2,99:32:101:0.980:2	0/1:0,69:32:69:1.00:2	0/1:0,110:31:110:1.00:2	0/1:0,99:31:99:1.00:2	0/1:0,95:31:95:1.00:2	0/1:116,70:32:186:0.376:2	0/1:57,44:32:101:0.436:2	0/1:0,159:32:160:1.00:2
chr3	88190809	rs7432838	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:32:94:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,24:31:24:1.00:2	0/1:4,129:32:133:0.970:2	0/1:0,76:32:76:1.00:2	0/1:0,130:31:130:1.00:2	0/1:88,31:32:119:0.261:2	0/1:1,119:32:120:0.992:2	0/1:117,77:33:195:0.397:2	0/1:79,52:32:131:0.397:2	0/1:0,156:31:157:1.00:2
chr3	88199298	rs6551278	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:28:47:1.00:2	0/1:0,26:28:26:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,105:28:105:1.00:2	0/1:1,112:28:113:0.991:2	0/1:0,85:29:85:1.00:2	0/1:73,50:30:123:0.407:2	0/1:0,88:29:88:1.00:2	0/1:34,31:30:65:0.477:2	0/1:38,28:29:66:0.424:2	0/1:0,100:27:100:1.00:2
chr3	89498428	rs1398197	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,75:31:179:0.419:2	./.	./.	./.	./.	./.
chr3	89521664	rs17801309	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,137:31:138:0.993:2	./.	./.	./.
chr3	89521693	rs35124509	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,59:29:119:0.496:2	0/1:57,54:29:111:0.486:2	0/1:71,43:29:114:0.377:2	./.	0/1:0,135:29:135:1.00:2	./.	./.	0/1:84,66:29:150:0.440:2
chr3	89521725	rs1054750	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,53:29:97:0.546:2	0/1:45,36:28:81:0.444:2	./.	./.	./.	./.	./.	0/1:67,48:26:115:0.417:2
chr3	93593119	rs6123	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,12:30:29:0.414:2	0/1:103,91:30:194:0.469:2	0/1:79,72:30:151:0.477:2	0/1:5,169:29:174:0.971:2	0/1:71,65:30:136:0.478:2	0/1:94,103:30:197:0.523:2	0/1:95,100:31:195:0.513:2	0/1:108,85:30:193:0.440:2	./.
chr3	93714763	rs146396078	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,100:33:195:0.513:2	0/1:68,56:33:124:0.452:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	93768268	rs33944211	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,45:32:103:0.437:2
chr3	93779860	rs17855824	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,40:30:85:0.471:2
chr3	93779970	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	0/1:195,4:32:199:0.020:2	./.
chr3	93780109	rs61739170	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,29:32:76:0.382:2	0/1:14,13:30:27:0.481:2	./.	./.	./.	./.	./.	./.
chr3	93780283	rs373657777	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:32:154:0.026:2	./.	./.	./.
chr3	93780317	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:33:145:0.028:2	./.	./.	./.
chr3	93813098	rs373633427	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:33:94:0.043:2	./.
chr3	96533683	rs77729199	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,23:32:43:0.535:2
chr3	96585745	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,2:37:7:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	96706563	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:34:117:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	96963004	rs9835140	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,35:32:72:0.486:2	./.	./.	./.	./.	./.	./.
chr3	97607290	rs13065340	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,31:31:59:0.525:2	0/1:10,18:30:28:0.643:2	0/1:5,5:32:10:0.500:2	0/1:32,29:31:61:0.475:2	0/1:15,14:29:29:0.483:2	0/1:19,18:30:38:0.486:2	./.	./.	./.	./.	0/1:37,40:31:77:0.519:2
chr3	97634518	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,3:33:60:0.050:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	97660084	rs11544446	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,30:31:74:0.405:2	0/1:17,10:30:27:0.370:2	./.	0/1:44,30:31:74:0.405:2	0/1:18,22:31:41:0.550:2	0/1:43,28:30:71:0.394:2	./.	./.	./.	./.	0/1:36,25:31:61:0.410:2
chr3	97660106	rs4857302	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,45:32:80:0.563:2	0/1:11,25:33:36:0.694:2	0/1:2,5:33:7:0.714:2	0/1:35,53:33:88:0.602:2	./.	0/1:34,50:33:84:0.595:2	0/1:35,42:33:77:0.545:2	./.	0/1:0,88:34:88:1.00:2	0/1:25,18:30:43:0.419:2	./.
chr3	97664725	rs2172257	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,45:32:87:0.517:2	0/1:33,16:32:49:0.327:2	0/1:11,5:31:16:0.313:2	0/1:58,58:31:116:0.500:2	./.	0/1:44,51:31:95:0.537:2	0/1:49,25:32:74:0.338:2	./.	0/1:2,92:32:94:0.979:2	0/1:58,49:32:107:0.458:2	./.
chr3	97673268	rs832079	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,86:29:87:0.989:2	0/1:0,47:29:47:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,111:29:111:1.00:2	0/1:0,123:28:123:1.00:2	0/1:0,122:29:122:1.00:2	0/1:0,164:28:164:1.00:2	0/1:0,154:29:154:1.00:2	0/1:0,126:29:126:1.00:2	0/1:1,115:30:116:0.991:2	0/1:0,73:30:73:1.00:2
chr3	97677974	rs56183666	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,20:32:34:0.588:2	0/1:6,10:31:16:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	97705610	rs371385903	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:32:90:0.044:2	./.	./.	./.	./.
chr3	97726747	rs832032	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,111:32:111:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,122:32:122:1.00:2	0/1:34,51:32:85:0.600:2	0/1:1,110:30:111:0.991:2	0/1:0,75:31:75:1.00:2	0/1:0,112:32:113:1.00:2	0/1:71,59:32:130:0.454:2	0/1:1,103:32:104:0.990:2	0/1:0,118:32:118:1.00:2
chr3	97806451	rs76417121	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,60:32:123:0.488:2
chr3	97806616	rs4518168	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:26,11:32:37:0.297:2	0/1:13,3:32:16:0.188:2	./.	./.	0/1:0,19:31:19:1.00:2	0/1:21,20:30:41:0.488:2	0/1:15,16:29:31:0.516:2	0/1:18,13:30:31:0.419:2	0/1:10,11:30:21:0.524:2	0/1:11,9:32:20:0.450:2	./.
chr3	97806742	rs77322229	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,40:31:75:0.533:2	./.	./.	./.	./.	./.	./.
chr3	97806944	rs80220955	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:32:3:1.00:2	0/1:0,12:30:12:1.00:2	./.	0/1:6,8:32:14:0.571:2	./.	./.	./.	./.	0/1:8,9:33:17:0.529:2
chr3	97851570	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,4:31:51:0.078:2	./.	./.	./.	./.	./.	./.
chr3	97851590	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,6:33:89:0.067:2	./.	0/1:80,6:33:86:0.070:2	./.	./.
chr3	97851751	rs113841133	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:135,62:32:197:0.315:2	./.	./.	./.	./.	./.	./.
chr3	97851871	rs113686881	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,6:31:192:0.031:2	./.	./.	./.	./.	./.
chr3	97851892	rs5009897	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:188,7:29:195:0.036:2	0/1:179,14:31:193:0.073:2	0/1:186,7:31:193:0.036:2	./.	0/1:184,4:33:188:0.021:2	./.	0/1:184,8:32:192:0.042:2
chr3	97851896	rs75688383	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:113,78:30:191:0.408:2	./.	./.	./.	./.	./.	./.
chr3	97851900	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,9:31:188:0.048:2	0/1:176,13:32:189:0.069:2	./.	0/1:180,6:34:186:0.032:2	./.	./.
chr3	97851968	rs139235176	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:179,17:32:196:0.087:2	0/1:171,26:32:197:0.132:2	0/1:151,31:32:183:0.170:2	./.	0/1:170,26:33:196:0.133:2	./.	./.
chr3	97851998	rs9845327	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,12:32:31:0.387:2	0/1:179,4:35:183:0.022:2	0/1:3,159:32:162:0.981:2	0/1:105,90:32:195:0.462:2	0/1:98,89:32:187:0.476:2	./.	0/1:103,88:33:191:0.461:2	./.	0/1:102,87:33:189:0.460:2
chr3	97852040	rs5009893	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,4:30:30:0.133:2	./.	0/1:163,15:31:179:0.084:2	0/1:194,6:30:200:0.030:2	0/1:184,9:30:193:0.047:2	./.	0/1:181,12:30:194:0.062:2	./.	0/1:183,12:31:195:0.062:2
chr3	97852058	rs62269700	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:181,10:29:191:0.052:2	0/1:177,21:30:198:0.106:2	0/1:186,8:31:194:0.041:2	./.	0/1:185,10:32:195:0.051:2	./.	0/1:178,9:32:187:0.048:2
chr3	97852066	rs62269701	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:175,11:31:186:0.059:2	0/1:178,21:32:199:0.106:2	0/1:185,8:32:193:0.041:2	./.	0/1:184,11:32:195:0.056:2	./.	0/1:185,9:32:194:0.046:2
chr3	97852083	rs9826076	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,8:31:35:0.229:2	./.	0/1:44,123:31:167:0.737:2	0/1:120,68:30:188:0.362:2	0/1:119,51:31:170:0.300:2	./.	0/1:129,63:32:192:0.328:2	./.	0/1:128,67:32:195:0.344:2
chr3	97852139	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,14:33:148:0.095:2	./.
chr3	97852211	rs72926074	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,26:31:67:0.388:2	./.	./.	./.	./.	./.	./.
chr3	97868229	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,3:34:53:0.057:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	97868258	rs112019994	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,18:30:59:0.305:2	./.	./.	./.	./.	./.	./.
chr3	97868278	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,6:31:96:0.063:2	./.	./.	0/1:96,4:35:100:0.040:2	./.	0/1:94,4:32:98:0.041:2
chr3	97868418	rs77954988	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,80:29:185:0.432:2	./.	./.	./.	./.	./.	./.
chr3	97868419	rs4241468	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,39:31:94:0.415:2	./.	0/1:85,102:32:187:0.545:2	0/1:122,71:32:193:0.368:2	0/1:105,69:31:174:0.397:2	./.	0/1:136,58:33:194:0.299:2	./.	0/1:107,83:32:190:0.437:2
chr3	97868529	rs113155361	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:85,9:29:94:0.096:2	./.	./.	./.	./.	./.	./.
chr3	97868532	rs112877568	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:165,4:32:170:0.024:2	./.	./.	0/1:84,9:29:93:0.097:2	./.	./.	./.	./.	./.	./.
chr3	97868538	rs113248833	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,6:31:92:0.065:2	./.	./.	./.	./.	./.	./.
chr3	97868559	rs112645563	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,4:33:82:0.049:2	0/1:185,9:32:194:0.046:2	0/1:150,5:32:155:0.032:2	./.	./.	./.	0/1:185,6:32:191:0.031:2
chr3	97868588	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,7:31:76:0.092:2	0/1:160,15:32:175:0.086:2	0/1:147,7:31:154:0.045:2	./.	./.	./.	./.
chr3	97868616	rs4379004	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,6:33:19:0.316:2	./.	0/1:0,100:32:100:1.00:2	0/1:84,91:32:175:0.520:2	0/1:94,94:32:188:0.500:2	./.	0/1:90,88:33:179:0.494:2	./.	0/1:103,86:33:189:0.455:2
chr3	97868656	rs146577101	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:142,46:32:188:0.245:2	0/1:155,36:32:191:0.188:2	0/1:172,21:32:194:0.109:2	./.	0/1:167,24:33:191:0.126:2	./.	./.
chr3	97868749	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,6:32:176:0.034:2	./.	./.	0/1:179,5:34:184:0.027:2	./.	./.
chr3	97868754	rs148429621	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,5:34:185:0.027:2	./.	./.
chr3	97868795	rs4857076	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,10:32:13:0.769:2	./.	0/1:1,72:31:73:0.986:2	0/1:58,65:32:123:0.528:2	0/1:38,49:32:87:0.563:2	./.	0/1:82,78:32:160:0.488:2	./.	0/1:92,100:32:192:0.521:2
chr3	97868856	rs72927996	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,31:31:57:0.544:2	./.	./.	./.	./.	./.	./.
chr3	97868931	rs76146040	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,16:30:47:0.340:2	./.	./.	./.	./.	./.	./.
chr3	97868938	rs80138979	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,17:30:48:0.354:2	./.	./.	./.	./.	./.	./.
chr3	97868970	rs12639519	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,36:32:60:0.600:2	0/1:55,38:32:93:0.409:2	0/1:26,18:32:44:0.409:2	./.	0/1:42,55:33:97:0.567:2	./.	0/1:43,55:33:98:0.561:2
chr3	97869072	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,6:31:200:0.030:2	./.
chr3	97869088	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,6:32:200:0.030:2	./.
chr3	97869111	rs75547468	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,51:30:117:0.436:2	./.	./.	./.	./.	./.	./.
chr3	97887753	rs199523657	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:175,23:32:198:0.116:2	./.	./.	./.	./.	./.	./.
chr3	97887853	rs148620705	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:174,15:32:189:0.079:2	./.	./.	./.	./.	./.	./.
chr3	97887864	rs116301500	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:176,15:31:191:0.079:2	./.	./.	./.	./.	./.	./.
chr3	97887865	rs4133320	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:33,23:31:56:0.411:2	0/1:182,5:31:187:0.027:2	0/1:114,76:31:190:0.400:2	0/1:118,71:30:189:0.376:2	0/1:120,78:32:198:0.394:2	./.	0/1:107,90:32:197:0.457:2	./.	0/1:114,79:32:193:0.409:2
chr3	97887902	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,9:32:192:0.047:2	0/1:189,5:33:194:0.026:2	./.	./.	./.	./.
chr3	97887944	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:174,6:31:180:0.033:2	./.	./.	./.	./.	./.	./.
chr3	97887957	rs143003334	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:177,5:27:182:0.027:2	./.	./.	./.	./.	./.	./.
chr3	97887963	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:182,5:31:187:0.027:2	./.	./.	./.	./.	./.	./.
chr3	97887970	rs72933946	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,9:33:198:0.045:2	0/1:160,5:34:165:0.030:2	./.	0/1:194,4:32:198:0.020:2	./.	./.
chr3	97887985	rs4133321	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,14:31:26:0.538:2	./.	0/1:104,78:31:182:0.429:2	0/1:94,86:31:180:0.478:2	0/1:82,81:31:163:0.497:2	./.	0/1:116,70:32:186:0.376:2	./.	0/1:110,83:32:193:0.430:2
chr3	97888042	rs4133322	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,15:31:36:0.417:2	./.	0/1:82,57:31:139:0.410:2	0/1:114,75:31:189:0.397:2	0/1:93,69:32:162:0.426:2	./.	0/1:132,65:32:198:0.330:2	./.	0/1:116,81:32:197:0.411:2
chr3	97888085	rs62266800	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,5:30:38:0.132:2	./.	0/1:126,27:31:153:0.176:2	0/1:186,10:31:196:0.051:2	0/1:156,15:31:171:0.088:2	./.	0/1:174,18:31:192:0.094:2	./.	0/1:184,13:32:197:0.066:2
chr3	97888141	rs147066998	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,59:33:138:0.428:2	./.
chr3	97888197	rs7623031	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,58:29:58:1.00:2	0/1:43,46:29:89:0.517:2	0/1:34,28:30:62:0.452:2	./.	0/1:60,47:31:107:0.439:2	./.	0/1:69,76:31:145:0.524:2
chr3	97888337	rs13082608	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,61:32:143:0.427:2
chr3	97983176	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:32:193:0.026:2	./.	./.
chr3	97983231	rs113835025	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:35:180:0.022:2	./.	./.
chr3	97983257	rs2132894	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,186:32:186:1.00:2	0/1:1,137:32:138:0.993:2	0/1:3,177:32:180:0.983:2	0/1:66,57:32:124:0.463:2	./.	0/1:0,182:33:182:1.00:2	./.	0/1:91,98:33:189:0.519:2
chr3	97983294	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:34:155:0.026:2	./.	./.	./.	./.
chr3	97983391	rs2173236	C	G,T	.	PASS	AC=1,4;AF=0.067,0.267;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0/2:32:171:1.00:2	./.	0/2:32:173:0.994:2	0/2:32:161:0.419:2	./.	0/2:33:177:1.00:2	./.	0/1:32:177:0.429:2
chr3	97983561	rs9289564	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,98:32:98:1.00:2	0/1:0,62:31:62:1.00:2	0/1:1,107:31:108:0.991:2	0/1:33,30:32:63:0.476:2	0/1:97,4:33:101:0.040:2	./.	./.	0/1:73,56:31:129:0.434:2
chr3	97983664	rs16846784	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,27:30:75:0.360:2	./.	./.	./.	./.	./.	0/1:119,66:31:185:0.357:2
chr3	97983685	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,8:32:87:0.092:2	./.	./.	./.	./.	./.	./.
chr3	97983699	rs58475490	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,22:31:81:0.272:2	./.	./.	./.	./.	./.	0/1:111,68:32:179:0.380:2
chr3	97983711	rs9853887	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,139:29:139:1.00:2	0/1:29,41:28:70:0.586:2	0/1:1,140:29:141:0.993:2	0/1:54,40:28:94:0.426:2	./.	0/1:4,163:30:167:0.976:2	./.	./.
chr3	97983740	rs36116717	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,8:31:61:0.131:2	./.	./.	./.	./.	./.	./.
chr3	97983839	rs146724389	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,13:32:27:0.481:2	./.	./.	./.	./.	./.	./.
chr3	97983942	rs9853906	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,54:28:54:1.00:2	0/1:0,38:28:38:1.00:2	0/1:0,50:28:50:1.00:2	0/1:21,20:30:41:0.488:2	./.	0/1:0,47:29:47:1.00:2	./.	./.
chr3	97983981	rs9871143	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,96:30:100:0.960:2	0/1:47,26:30:73:0.356:2	0/1:3,101:30:104:0.971:2	0/1:47,37:30:84:0.440:2	./.	0/1:1,92:31:93:0.989:2	./.	./.
chr3	97984019	rs201216141	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,13:30:110:0.118:2	./.	0/1:128,4:30:132:0.030:2	./.	./.	./.	0/1:189,6:31:195:0.031:2
chr3	97984097	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:31:124:0.032:2	./.	./.	./.	./.	./.
chr3	98001777	rs72487753	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:82,75:32:157:0.478:2	0/1:52,46:31:98:0.469:2	0/1:6,6:32:12:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:2,144:32:146:0.986:2
chr3	98001809	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,86:29:183:0.470:2
chr3	98002419	rs16839214	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:57,39:32:96:0.406:2	0/1:23,27:32:50:0.540:2	0/1:7,5:32:12:0.417:2	./.	./.	./.	./.	./.	./.	./.	0/1:2,128:32:130:0.985:2
chr3	98002445	rs72934924	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,18:31:50:0.360:2	./.	./.	./.	./.	./.	./.
chr3	98002587	rs16839611	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:31,27:31:58:0.466:2	0/1:26,15:30:41:0.366:2	./.	./.	0/1:9,11:30:20:0.550:2	./.	./.	./.	./.	./.	0/1:0,81:30:81:1.00:2
chr3	98072771	rs148253533	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,65:31:138:0.471:2	./.	./.	./.	./.	./.
chr3	98073313	rs9822460	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:47,41:33:88:0.466:2	0/1:29,25:32:54:0.463:2	0/1:4,8:32:12:0.667:2	./.	./.	./.	0/1:31,28:32:59:0.475:2	0/1:50,40:32:90:0.444:2	./.	0/1:0,80:32:80:1.00:2	0/1:52,57:33:109:0.523:2
chr3	98109578	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:33:183:0.022:2
chr3	98109640	rs13068323	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:114,80:31:194:0.412:2	0/1:88,69:31:157:0.439:2	0/1:21,17:31:38:0.447:2	./.	./.	./.	0/1:104,72:31:176:0.409:2	0/1:113,78:32:191:0.408:2	./.	0/1:88,83:32:172:0.485:2	0/1:90,97:31:187:0.519:2
chr3	98188485	rs190259915	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,59:32:194:0.304:2	./.	./.
chr3	98188577	rs62619937	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,4:32:98:0.041:2	./.	./.	./.	./.	./.	./.
chr3	98188580	rs138585571	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,71:32:121:0.587:2	./.	./.	./.	./.
chr3	98188748	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:31:123:0.033:2	./.	./.	./.
chr3	98188768	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,5:28:130:0.038:2	./.	./.	./.	./.	./.
chr3	98188784	rs201244755	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:32:144:0.028:2	./.	./.	./.
chr3	98216589	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,14:33:200:0.070:2	./.	./.
chr3	98216965	rs142515559	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,5:32:111:0.045:2	./.	./.	./.	./.
chr3	98217178	rs55639376	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,59:30:133:0.450:2	./.	./.	./.
chr3	98250898	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,20:30:63:0.317:2	./.	./.	./.	./.	./.
chr3	98250986	rs2230344	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:83,54:32:137:0.394:2	0/1:36,23:32:59:0.390:2	./.	0/1:71,96:31:167:0.575:2	./.	./.	./.	./.	./.	./.	./.
chr3	98304403	rs11921054	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,45:32:95:0.474:2
chr3	98304467	rs1729995	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:32:75:1.00:2	0/1:2,39:32:41:0.951:2	0/1:1,14:33:15:0.933:2	0/1:56,43:32:99:0.434:2	0/1:1,64:32:65:0.985:2	0/1:61,45:32:106:0.425:2	./.	0/1:53,58:33:111:0.523:2	0/1:1,105:33:106:0.991:2	0/1:30,37:31:67:0.552:2	0/1:1,85:32:86:0.988:2
chr3	98307630	rs2228056	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,42:30:97:0.433:2	./.	./.	./.	./.	./.
chr3	98307696	rs1131857	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,23:31:54:0.426:2	./.	./.	0/1:43,31:31:74:0.419:2	./.	0/1:35,22:32:57:0.386:2	./.
chr3	98503792	rs112115496	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,41:33:81:0.506:2	./.	./.	./.	./.	./.	./.	./.
chr3	98512540	rs28489284	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,22:30:48:0.458:2	./.	./.	./.	./.	./.	./.	./.
chr3	98519481	rs1822017	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,57:31:135:0.422:2	./.	./.	./.	./.	./.	./.
chr3	98541116	rs828616	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:75,61:32:136:0.449:2	0/1:56,26:32:82:0.317:2	./.	0/1:103,89:31:192:0.464:2	./.	0/1:129,59:31:188:0.314:2	0/1:116,71:32:187:0.380:2	0/1:104,73:31:177:0.412:2	0/1:0,146:32:146:1.00:2	0/1:0,139:32:139:1.00:2	0/1:0,138:32:138:1.00:2
chr3	98600385	rs9838238	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,30:33:57:0.526:2	./.	./.	0/1:22,15:34:37:0.405:2	./.	./.	./.	./.
chr3	98619997	rs17852693	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,24:34:33:0.727:2	./.	./.	./.	./.	./.	./.
chr3	99514429	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,4:31:20:0.200:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	99514570	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:32:120:0.033:2	./.	./.
chr3	99569514	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,6:31:133:0.045:2	./.	./.	./.	./.
chr3	99569897	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,3:32:22:0.136:2	./.	./.	./.
chr3	99643176	rs793440	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,66:32:148:0.446:2	0/1:52,56:32:108:0.519:2	0/1:12,10:31:22:0.455:2	0/1:82,72:31:154:0.468:2	0/1:89,46:31:135:0.341:2	0/1:75,60:31:135:0.444:2	0/1:3,116:32:119:0.975:2	./.	0/1:71,78:33:149:0.523:2	0/1:88,61:32:149:0.409:2	0/1:101,88:32:189:0.466:2
chr3	99885236	rs11537817	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,18:33:36:0.500:2	0/1:16,21:32:37:0.568:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	99886662	rs11537816	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,32:31:70:0.457:2	0/1:34,15:32:49:0.306:2	./.	0/1:28,23:31:51:0.451:2	./.	0/1:33,28:31:61:0.459:2	./.	./.
chr3	100002641	rs149192580	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,24:33:88:0.273:2
chr3	100084432	rs277644	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,78:32:175:0.446:2
chr3	100119548	rs7645509	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,5:34:12:0.417:2
chr3	100170628	rs9844083	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,28:32:50:0.560:2	0/1:10,19:32:29:0.655:2	./.	0/1:47,20:31:67:0.299:2	0/1:28,16:32:44:0.364:2	0/1:55,14:33:69:0.203:2	0/1:38,15:33:53:0.283:2	./.	./.	./.	./.
chr3	100170634	rs9848109	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,24:33:49:0.490:2	0/1:12,16:32:28:0.571:2	./.	0/1:49,19:33:68:0.279:2	0/1:31,13:32:44:0.295:2	0/1:51,11:33:62:0.177:2	0/1:37,9:32:46:0.196:2	./.	./.	./.	./.
chr3	100174722	rs1132022	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,182:32:185:0.984:2	0/1:3,115:32:118:0.975:2	./.	0/1:92,99:32:191:0.518:2	0/1:103,75:31:179:0.421:2	0/1:110,79:32:189:0.418:2	0/1:93,80:32:173:0.462:2	./.	./.	./.	./.
chr3	100274154	rs141815205	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,15:30:40:0.375:2	./.	./.	./.	./.
chr3	100274198	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:31:76:0.053:2	./.	./.	./.	./.	./.
chr3	100287764	rs28722928	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,97:30:187:0.519:2	./.	./.	./.	./.	0/1:92,82:31:174:0.471:2	./.	./.
chr3	100354524	rs1144122	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:32:10:0.300:2	./.	0/1:0,37:32:37:1.00:2	0/1:48,34:32:82:0.415:2	0/1:34,14:32:48:0.292:2	0/1:42,39:31:81:0.481:2	./.	0/1:45,33:32:78:0.423:2	0/1:64,61:32:125:0.488:2
chr3	100374740	rs9866111	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:33:66:1.00:2	0/1:0,30:31:30:1.00:2	0/1:2,6:29:8:0.750:2	0/1:1,75:33:76:0.987:2	./.	0/1:40,24:31:64:0.375:2	0/1:21,24:32:45:0.533:2	0/1:40,36:32:76:0.474:2	0/1:0,79:33:79:1.00:2	0/1:64,44:32:108:0.407:2	0/1:75,39:33:114:0.342:2
chr3	100432532	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:74,4:31:78:0.051:2	./.	./.	./.	./.	./.	./.
chr3	100467018	rs11353	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,167:32:168:0.994:2	0/1:0,88:32:88:1.00:2	0/1:18,11:31:29:0.379:2	0/1:3,191:32:194:0.985:2	0/1:113,86:32:199:0.432:2	0/1:121,76:32:197:0.386:2	0/1:99,96:32:195:0.492:2	0/1:110,81:32:191:0.424:2	0/1:0,191:33:191:1.00:2	0/1:100,88:32:189:0.468:2	0/1:109,84:31:193:0.435:2
chr3	100473505	rs10936352	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,35:31:67:0.522:2	0/1:23,17:32:40:0.425:2	0/1:6,6:31:12:0.500:2	0/1:0,101:32:101:1.00:2	0/1:40,28:30:68:0.412:2	./.	./.	0/1:43,50:31:93:0.538:2	0/1:0,87:32:87:1.00:2	0/1:37,42:31:79:0.532:2	0/1:62,59:32:121:0.488:2
chr3	100508313	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,5:30:64:0.078:2	./.	./.
chr3	100617668	rs34999788	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,30:31:73:0.417:2	0/1:46,33:32:79:0.418:2	./.	./.	./.	./.
chr3	100617680	rs2245370	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,7:32:7:1.00:2	0/1:37,28:31:65:0.431:2	0/1:31,29:32:60:0.483:2	./.	0/1:30,38:33:68:0.559:2	0/1:0,67:32:67:1.00:2	0/1:34,41:33:75:0.547:2	0/1:39,31:32:70:0.443:2	0/1:0,61:32:61:1.00:2
chr3	100712249	rs3732895	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:26:6:0.500:2	./.	./.	0/1:81,51:28:132:0.386:2	./.	./.	./.	./.	./.
chr3	100949842	rs348867	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,43:31:44:0.977:2	0/1:0,20:32:20:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,51:31:51:1.00:2	0/1:29,28:32:57:0.491:2	0/1:0,49:30:49:1.00:2	0/1:0,40:31:40:1.00:2	0/1:28,21:31:49:0.429:2	0/1:0,63:32:63:1.00:2	0/1:21,6:32:27:0.222:2	./.
chr3	100963154	rs571391	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,18:30:18:1.00:2	0/1:64,83:30:147:0.565:2	0/1:59,48:30:107:0.449:2	0/1:1,130:30:131:0.992:2	0/1:0,108:30:108:1.00:2	0/1:79,59:30:138:0.428:2	0/1:79,51:30:130:0.392:2	0/1:79,68:30:147:0.463:2	./.
chr3	100972610	rs139255481	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,18:32:47:0.383:2	./.	./.	./.
chr3	100992525	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:31:130:0.031:2	./.	./.	./.	./.	./.
chr3	100994497	rs533852	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:29:4:1.00:2	0/1:14,12:29:26:0.462:2	0/1:17,5:29:22:0.227:2	0/1:0,34:30:34:1.00:2	0/1:0,35:29:35:1.00:2	./.	0/1:14,11:31:25:0.440:2	./.	./.
chr3	101056447	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:32:139:0.029:2	./.	./.	./.
chr3	101066717	rs2433031	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,20:31:50:0.400:2	0/1:21,14:32:35:0.400:2	0/1:39,27:31:66:0.409:2	0/1:16,13:31:29:0.448:2	./.	./.	./.	./.
chr3	101080694	rs7616677	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:32:7:0.714:2	./.	./.	0/1:58,46:32:104:0.442:2	0/1:42,28:33:70:0.400:2	0/1:2,97:32:99:0.980:2	0/1:58,46:33:104:0.442:2	0/1:27,36:33:63:0.571:2	./.
chr3	101085413	rs939443	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:32:7:0.857:2	./.	./.	0/1:35,31:32:66:0.470:2	0/1:28,30:33:58:0.517:2	0/1:0,77:33:77:1.00:2	0/1:56,38:34:94:0.404:2	0/1:48,42:33:90:0.467:2	./.
chr3	101136513	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:33:140:0.029:2	./.	./.	./.	./.
chr3	101177848	rs6809436	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,29:32:63:0.460:2	./.	./.	./.	./.	0/1:54,34:33:88:0.386:2	0/1:0,143:33:143:1.00:2
chr3	101219889	rs7621830	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,14:29:42:0.341:2	0/1:25,8:30:33:0.242:2	0/1:0,40:30:40:1.00:2	0/1:34,38:31:73:0.528:2	0/1:35,16:31:51:0.314:2	./.
chr3	101231921	rs9682313	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,8:31:32:0.250:2	0/1:14,14:30:28:0.500:2	0/1:0,32:30:32:1.00:2	0/1:18,16:31:34:0.471:2	0/1:18,5:33:23:0.217:2	./.
chr3	101283792	rs3762735	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:30:73:1.00:2	0/1:2,45:30:47:0.957:2	0/1:5,5:29:10:0.500:2	0/1:56,34:27:90:0.378:2	./.	./.	./.	./.	0/1:57,51:30:108:0.472:2	./.	./.
chr3	101284081	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	101311511	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:32:151:0.026:2	./.	./.	./.	./.	./.
chr3	101311527	rs1045675	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,6:26:171:0.035:2	./.	./.	./.	./.	./.
chr3	101311543	rs1045676	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:116,6:30:122:0.049:2	./.	./.	./.	./.	./.	./.
chr3	101371412	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,42:32:80:0.525:2	./.	./.	./.	./.	./.	./.
chr3	101371418	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:34:157:0.025:2	./.	./.	./.
chr3	101399983	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,6:32:190:0.032:2	./.	./.
chr3	101399998	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:179,4:32:183:0.022:2	./.	./.	./.	./.	0/1:178,4:33:182:0.022:2	./.	./.
chr3	101446357	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:113,4:31:117:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr3	101476602	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:33:124:0.032:2	./.	./.	./.
chr3	101476645	rs145072852	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,34:31:100:0.340:2	./.
chr3	101476732	rs77015203	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,57:31:98:0.582:2	./.	./.	./.
chr3	101484335	rs2625282	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,126:33:128:0.984:2	0/1:0,76:33:76:1.00:2	0/1:1,22:31:23:0.957:2	0/1:1,174:32:175:0.994:2	0/1:66,88:33:154:0.571:2	0/1:0,190:32:190:1.00:2	0/1:0,111:33:111:1.00:2	0/1:0,194:32:194:1.00:2	0/1:0,194:33:194:1.00:2	0/1:101,60:32:161:0.373:2	./.
chr3	101504525	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:30:125:0.032:2	./.	./.	./.
chr3	101571550	rs587555	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,24:33:49:0.500:2	0/1:11,25:32:36:0.694:2	0/1:0,10:31:10:1.00:2	0/1:0,33:32:33:1.00:2	./.	0/1:0,45:32:45:1.00:2	0/1:19,17:32:37:0.472:2	0/1:27,25:31:52:0.481:2	0/1:0,60:33:60:1.00:2	./.	./.
chr3	101572228	rs35313454	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,14:33:31:0.452:2
chr3	101572635	rs199821359	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,11:16:159:0.069:2	./.	./.	./.	./.	./.	0/1:93,9:16:102:0.088:2	./.
chr3	101576175	rs14134	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,46:32:118:0.390:2	0/1:16,23:32:39:0.590:2	0/1:0,20:33:20:1.00:2	0/1:0,138:33:138:1.00:2	./.	0/1:2,105:33:107:0.981:2	0/1:103,89:33:192:0.464:2	0/1:113,81:33:194:0.418:2	0/1:0,143:34:143:1.00:2	./.	./.
chr3	102157365	rs6784362	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,5:31:11:0.455:2	0/1:57,52:32:109:0.477:2	0/1:59,47:31:106:0.443:2	./.	./.	./.	./.	./.	./.
chr3	102157417	rs6784389	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,42:32:83:0.512:2	0/1:43,29:32:73:0.403:2	./.	./.	./.	./.	./.	./.
chr3	102181131	rs12054046	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:33:7:1.00:2	0/1:33,24:33:58:0.421:2	0/1:22,24:33:47:0.522:2	./.	./.	./.	./.	./.	./.
chr3	102181200	rs200281628	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,6:16:31:0.194:2	0/1:12,8:18:20:0.400:2	0/1:41,13:14:54:0.241:2	./.	0/1:25,11:15:36:0.306:2	./.	./.	./.
chr3	105252515	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:34:76:0.053:2
chr3	105258861	rs1044240	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,18:32:44:0.409:2	./.	./.	0/1:28,42:33:70:0.600:2	0/1:60,50:33:110:0.455:2
chr3	105260518	rs579565	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:23,20:30:43:0.465:2	0/1:7,11:31:18:0.611:2	0/1:0,9:31:9:1.00:2	./.	0/1:42,18:30:60:0.300:2	0/1:0,70:30:70:1.00:2	./.	0/1:52,40:30:92:0.435:2	0/1:46,23:32:70:0.333:2	0/1:20,31:31:52:0.608:2	./.
chr3	105260520	rs1044243	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,34:30:60:0.567:2	./.	./.	./.	./.	./.	./.	./.
chr3	105260596	rs599278	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:34:29:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,42:34:42:1.00:2	0/1:0,22:33:22:1.00:2	0/1:0,54:33:54:1.00:2
chr3	105264176	rs34926152	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,44:31:94:0.468:2	0/1:45,25:31:70:0.357:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	105266274	rs16851279	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,40:31:80:0.500:2	0/1:49,46:30:95:0.484:2	./.	./.	./.
chr3	105266331	rs9855810	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,75:33:161:0.466:2	./.	./.	./.	./.	./.	./.	./.
chr3	105271014	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,8:25:186:0.043:2	./.	./.	0/1:181,6:27:187:0.032:2
chr3	105271362	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2	./.	./.
chr3	105389153	rs11713094	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:41,43:31:84:0.512:2	0/1:23,16:30:39:0.410:2	./.	0/1:66,58:31:124:0.468:2	0/1:40,44:30:84:0.524:2	./.	0/1:55,47:30:102:0.461:2	./.	./.	0/1:58,54:31:112:0.482:2	0/1:67,46:31:114:0.407:2
chr3	105422844	rs2305037	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,45:32:96:0.469:2	0/1:26,18:33:44:0.409:2	0/1:0,11:31:11:1.00:2	0/1:53,61:32:114:0.535:2	0/1:57,33:32:90:0.367:2	0/1:0,109:32:109:1.00:2	0/1:44,55:33:99:0.556:2	0/1:0,118:32:118:1.00:2	0/1:0,122:33:122:1.00:2	0/1:50,46:32:96:0.479:2	0/1:80,70:33:151:0.467:2
chr3	105438957	rs2305036	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:57,34:31:91:0.374:2	0/1:39,15:30:54:0.278:2	./.	0/1:47,46:31:93:0.495:2	0/1:66,47:30:113:0.416:2	./.	0/1:79,53:29:133:0.402:2	./.	./.	0/1:46,38:29:84:0.452:2	0/1:47,51:29:98:0.520:2
chr3	105439026	rs2305035	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:55,26:32:81:0.321:2	0/1:30,12:31:42:0.286:2	./.	0/1:54,26:32:80:0.325:2	0/1:64,31:31:95:0.326:2	./.	0/1:71,47:31:118:0.398:2	./.	./.	0/1:47,27:32:74:0.365:2	0/1:56,44:32:101:0.440:2
chr3	105470393	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:194,4:34:198:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr3	105470398	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:33:199:0.020:2	./.	./.	./.	./.	./.
chr3	107096547	rs709564	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,41:33:93:0.441:2	0/1:34,28:32:62:0.452:2	0/1:0,13:32:13:1.00:2	0/1:65,54:33:119:0.454:2	./.	./.	0/1:27,41:32:68:0.603:2	0/1:147,5:33:152:0.033:2	0/1:79,80:33:159:0.503:2	0/1:53,50:32:103:0.485:2	./.
chr3	107096877	rs150994095	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,37:32:83:0.446:2	0/1:28,21:32:49:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	107097072	rs34158098	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,25:32:69:0.362:2	./.	./.	./.	./.	./.
chr3	107097346	rs3811061	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,67:32:145:0.462:2	./.	./.	./.	0/1:83,59:32:142:0.415:2	./.	./.	./.
chr3	107435532	rs142400819	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,53:33:149:0.358:2	./.	./.	./.
chr3	107451825	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:31:123:0.033:2	./.	./.	./.
chr3	107508711	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,6:32:192:0.031:2	./.	./.	./.	./.	./.
chr3	107881376	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2	./.
chr3	107884269	rs62264150	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,47:28:111:0.423:2	0/1:26,34:29:60:0.567:2	./.	./.	./.	0/1:71,59:29:130:0.454:2	./.	./.	./.	./.	./.
chr3	107937408	rs1135897	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,9:31:42:0.214:2	0/1:26,13:32:39:0.333:2	./.	./.	./.	0/1:35,27:31:62:0.435:2	./.	./.	./.	./.	./.
chr3	108072298	rs6779254	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,14:32:33:0.424:2	0/1:13,9:32:22:0.409:2	0/1:0,8:33:8:1.00:2	0/1:11,10:32:21:0.476:2	0/1:2,24:31:26:0.923:2	0/1:18,16:32:34:0.471:2	0/1:0,21:32:21:1.00:2	0/1:17,8:32:25:0.320:2	0/1:0,25:31:25:1.00:2	0/1:0,24:32:24:1.00:2	0/1:31,18:32:49:0.367:2
chr3	108072555	rs367817011	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:34:121:0.033:2	./.	./.
chr3	108081247	rs16854512	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:32,31:32:63:0.492:2	0/1:23,9:32:32:0.281:2	./.	0/1:22,23:31:45:0.511:2	./.	./.	./.	./.	0/1:50,21:31:71:0.296:2	0/1:0,30:32:30:1.00:2	0/1:43,36:31:80:0.456:2
chr3	108081277	rs6779094	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,23:31:50:0.460:2	./.	0/1:37,23:31:60:0.383:2	./.	0/1:31,18:30:49:0.367:2	./.	./.	0/1:41,50:31:91:0.549:2
chr3	108095365	rs2124736	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,23:32:43:0.535:2	./.	0/1:14,24:31:38:0.632:2	./.	0/1:32,31:31:63:0.492:2	./.	./.	0/1:27,16:31:43:0.372:2
chr3	108096098	rs1463426	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:113,75:32:188:0.399:2	0/1:62,53:31:115:0.461:2	0/1:0,18:31:18:1.00:2	0/1:2,189:32:191:0.990:2	0/1:2,111:32:113:0.982:2	0/1:0,147:31:147:1.00:2	0/1:9,131:32:140:0.936:2	0/1:0,191:32:191:1.00:2	0/1:0,197:33:197:1.00:2	0/1:2,139:32:141:0.986:2	0/1:2,186:31:189:0.989:2
chr3	108100386	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,4:32:143:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr3	108135744	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,4:31:57:0.070:2	./.	./.	./.	./.	./.	./.
chr3	108147543	rs61745179	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,15:31:31:0.484:2	./.	./.	./.	0/1:112,82:31:194:0.423:2	./.	./.	./.	./.
chr3	108147728	rs3900940	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:31:8:0.500:2	./.	0/1:27,29:31:56:0.518:2	0/1:28,26:31:54:0.481:2	0/1:32,19:31:51:0.373:2	0/1:32,24:31:56:0.429:2	0/1:37,38:32:75:0.507:2	./.	./.
chr3	108163559	rs148022324	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,83:31:180:0.461:2	./.	./.	./.	./.	./.
chr3	108188993	rs9868484	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,154:31:157:0.987:2	0/1:3,137:31:141:0.979:2	0/1:22,14:30:36:0.389:2	0/1:85,104:30:190:0.550:2	0/1:79,59:30:138:0.428:2	0/1:0,175:30:175:1.00:2	0/1:78,78:31:156:0.500:2	0/1:2,170:30:172:0.988:2	0/1:0,164:31:164:1.00:2	0/1:104,74:30:178:0.416:2	./.
chr3	108189627	rs4299484	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,38:33:76:0.500:2	0/1:19,19:33:38:0.500:2	./.	./.	./.	0/1:61,65:32:126:0.516:2	./.	0/1:82,64:33:146:0.438:2	./.	0/1:36,46:33:82:0.561:2	./.
chr3	108287103	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,4:30:93:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr3	108298260	rs2278911	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,19:33:62:0.306:2	./.	./.	./.	./.
chr3	108303958	rs79888562	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,52:32:98:0.531:2	./.	0/1:68,42:33:110:0.382:2	./.	./.	./.
chr3	108303989	rs34788499	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,39:31:95:0.411:2	./.	./.	./.	./.	./.
chr3	108344785	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:32:97:0.041:2	./.
chr3	108351915	rs139745617	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,49:32:87:0.563:2	./.	./.	./.	./.	./.	./.
chr3	108369954	rs2969900	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:4,97:33:101:0.960:2	0/1:1,60:32:61:0.984:2	./.	0/1:97,84:32:181:0.464:2	./.	0/1:102,81:32:183:0.443:2	./.	0/1:72,43:33:115:0.374:2	./.	0/1:2,107:33:109:0.982:2	./.
chr3	108373022	rs2969901	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,40:31:40:1.00:2	0/1:1,35:31:36:0.972:2	./.	0/1:40,31:30:71:0.437:2	./.	0/1:63,29:30:92:0.315:2	./.	0/1:41,27:30:68:0.397:2	./.	0/1:0,75:31:75:1.00:2	./.
chr3	108403086	rs9856097	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:32:63:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,58:33:58:1.00:2	0/1:0,54:33:54:1.00:2	0/1:2,80:31:82:0.976:2
chr3	108475974	rs11708527	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:19,26:33:45:0.578:2	0/1:14,8:32:22:0.364:2	./.	0/1:0,53:32:53:1.00:2	./.	./.	./.	./.	./.	0/1:23,19:32:42:0.452:2	0/1:39,21:33:60:0.350:2
chr3	108541761	rs9879812	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:40,38:29:79:0.487:2	0/1:25,24:30:49:0.490:2	./.	0/1:54,37:30:91:0.407:2	./.	./.	0/1:20,15:30:35:0.429:2	./.	0/1:40,37:31:77:0.481:2	0/1:0,74:31:74:1.00:2	./.
chr3	108549621	rs148894492	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,11:32:100:0.110:2	./.	./.	./.	./.	./.	./.
chr3	108557820	rs7651205	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:40,48:33:88:0.545:2	0/1:25,33:33:58:0.569:2	0/1:3,10:32:13:0.769:2	./.	./.	0/1:45,49:32:94:0.521:2	0/1:42,26:33:68:0.382:2	./.	0/1:60,35:34:95:0.368:2	0/1:46,45:33:91:0.495:2	0/1:64,59:33:123:0.480:2
chr3	108634973	rs10933973	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,119:31:121:0.983:2	./.	./.	0/1:73,85:33:158:0.538:2	0/1:1,107:32:108:0.991:2	0/1:71,75:32:146:0.514:2
chr3	108639384	rs6804162	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,135:29:135:1.00:2	0/1:0,113:28:113:1.00:2	./.	0/1:86,84:29:170:0.494:2	0/1:86,42:29:128:0.328:2	./.	0/1:82,56:29:138:0.406:2	0/1:0,148:28:148:1.00:2	./.	./.	./.
chr3	108639423	rs2715687	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,78:31:78:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,92:30:92:1.00:2	0/1:1,67:30:68:0.985:2	0/1:0,98:29:98:1.00:2	0/1:0,73:29:73:1.00:2	0/1:0,67:30:67:1.00:2	0/1:0,96:31:96:1.00:2	./.	0/1:2,84:31:87:0.977:2
chr3	108672541	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:31:160:0.025:2	./.	./.	./.	./.
chr3	108677821	rs2197737	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,15:33:27:0.556:2	0/1:20,12:33:32:0.375:2	0/1:0,22:32:22:1.00:2	0/1:14,6:33:20:0.300:2	./.	0/1:3,37:33:40:0.925:2	./.	0/1:1,35:33:36:0.972:2
chr3	108677910	rs78212601	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,16:31:38:0.421:2	./.	./.	./.	./.	0/1:19,16:30:35:0.457:2
chr3	108690221	rs2593943	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,12:29:12:1.00:2	0/1:78,65:30:144:0.455:2	0/1:46,24:30:70:0.343:2	0/1:0,99:30:99:1.00:2	0/1:59,52:30:111:0.468:2	./.	0/1:2,115:31:117:0.983:2	./.	0/1:0,111:31:111:1.00:2
chr3	108703548	rs2593959	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:32:11:1.00:2	0/1:43,23:31:66:0.348:2	0/1:35,24:31:59:0.407:2	0/1:0,74:31:74:1.00:2	0/1:32,26:31:58:0.448:2	./.	0/1:2,83:32:85:0.976:2	./.	0/1:0,74:32:74:1.00:2
chr3	108703587	rs2290057	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,55:31:119:0.462:2	./.
chr3	108705737	rs114067906	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,30:32:69:0.435:2	./.	./.
chr3	108719470	rs3762698	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:33:7:0.429:2	0/1:24,25:32:49:0.510:2	0/1:18,17:32:35:0.486:2	0/1:36,21:33:57:0.368:2	./.	./.	./.	./.	0/1:43,42:33:85:0.494:2
chr3	108723983	rs35421732	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	108725862	rs2044589	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,15:31:15:1.00:2	0/1:88,48:32:136:0.353:2	0/1:51,63:32:114:0.553:2	0/1:0,83:32:83:1.00:2	0/1:59,67:32:126:0.532:2	./.	0/1:0,119:33:119:1.00:2	./.	0/1:1,102:32:103:0.990:2
chr3	108725947	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,35:33:85:0.412:2	./.
chr3	108754214	rs3762697	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	0/1:35,42:29:77:0.545:2	0/1:37,17:29:54:0.315:2	./.	0/1:2,63:29:65:0.969:2	./.	0/1:54,44:29:98:0.449:2
chr3	108754238	rs4855576	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:30:56:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,8:30:8:1.00:2	0/1:54,17:29:71:0.239:2	0/1:0,35:30:35:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,79:30:79:1.00:2	0/1:0,47:31:47:1.00:2	0/1:1,48:30:51:0.980:2	0/1:0,87:31:87:1.00:2
chr3	108754260	rs3762696	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:30:7:1.00:2	0/1:45,12:30:57:0.211:2	0/1:16,12:31:28:0.429:2	0/1:0,37:30:37:1.00:2	0/1:21,9:29:30:0.300:2	./.	0/1:1,35:30:36:0.972:2	./.	0/1:42,21:31:63:0.333:2
chr3	108780831	rs7653651	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,4:32:12:0.333:2	0/1:52,50:32:102:0.490:2	0/1:48,18:31:66:0.273:2	0/1:55,34:31:89:0.382:2	./.	./.	./.	./.	./.
chr3	108780836	rs17225637	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,43:33:102:0.422:2	./.	./.
chr3	109028070	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:32:169:0.024:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	109028113	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:32:172:0.023:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	109049384	rs13059848	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:19,27:31:46:0.587:2	0/1:10,16:31:26:0.615:2	./.	./.	0/1:36,31:30:67:0.463:2	./.	./.	./.	0/1:28,21:31:49:0.429:2	./.	./.
chr3	109052732	rs3762648	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:48,44:32:92:0.478:2	0/1:37,28:32:65:0.431:2	./.	0/1:0,54:32:54:1.00:2	0/1:33,23:31:56:0.411:2	0/1:1,68:32:69:0.986:2	0/1:39,19:32:58:0.328:2	0/1:0,58:32:58:1.00:2	0/1:39,52:33:91:0.571:2	0/1:49,37:32:86:0.430:2	0/1:58,54:33:112:0.482:2
chr3	109178707	rs769534	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,32:33:52:0.615:2	0/1:20,14:33:34:0.412:2	0/1:3,2:34:5:0.400:2	0/1:0,46:33:46:1.00:2	0/1:12,5:33:17:0.294:2	0/1:0,44:33:44:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,47:32:47:1.00:2	./.	0/1:25,15:33:40:0.375:2	0/1:37,20:33:57:0.351:2
chr3	109178758	rs769533	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,19:31:19:1.00:2	0/1:0,19:31:19:1.00:2	./.	0/1:0,17:31:17:1.00:2	0/1:0,8:28:8:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,32:31:32:1.00:2
chr3	111264008	rs145133367	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,69:33:143:0.483:2	./.	./.
chr3	111313457	rs10804491	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,20:33:47:0.426:2	0/1:11,16:32:27:0.593:2	0/1:0,5:33:5:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,26:31:26:1.00:2	./.	0/1:11,17:31:28:0.607:2	0/1:0,53:32:53:1.00:2
chr3	111313854	rs938213	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,46:31:101:0.455:2	0/1:33,22:32:55:0.400:2	0/1:0,15:31:15:1.00:2	0/1:0,143:31:144:1.00:2	0/1:0,184:30:184:1.00:2	0/1:0,123:31:123:1.00:2	0/1:0,192:31:192:1.00:2	0/1:0,183:31:183:1.00:2	./.	0/1:59,40:32:99:0.404:2	0/1:1,131:31:133:0.992:2
chr3	111356083	rs1533270	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:33:65:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,87:33:87:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,87:33:87:1.00:2	0/1:0,91:34:91:1.00:2	0/1:0,73:33:73:1.00:2	0/1:0,78:33:78:1.00:2
chr3	111356092	rs34636484	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:32:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	111603685	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:32:121:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	111658463	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,39:30:95:0.411:2	./.	./.	./.
chr3	111667901	rs34542209	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,21:31:76:0.276:2	./.	./.	./.	./.
chr3	111672861	rs34081887	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,27:32:75:0.360:2	./.	./.	./.	./.
chr3	111688578	rs774854	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,16:30:35:0.471:2	./.	./.	./.	./.	./.	./.
chr3	111688610	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,4:32:59:0.068:2	./.	./.	./.	./.	./.	./.	./.
chr3	111718446	rs35978996	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,10:32:18:0.556:2	./.	./.	./.	./.	./.	./.	./.
chr3	111719786	rs2292583	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,24:32:48:0.500:2	0/1:17,14:31:31:0.452:2	./.	0/1:15,11:30:26:0.423:2	./.	./.	./.	./.
chr3	111763085	rs4682350	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:31:44:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,38:31:38:1.00:2	0/1:32,20:31:52:0.385:2	0/1:0,68:32:68:1.00:2	0/1:26,24:31:50:0.480:2	0/1:0,50:31:50:1.00:2
chr3	111766751	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:32:195:0.021:2	./.	./.	./.	./.	./.
chr3	111799845	rs340151	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:92,100:32:192:0.521:2	0/1:77,79:32:156:0.506:2	0/1:0,33:31:33:1.00:2	0/1:0,191:31:191:1.00:2	0/1:3,163:32:166:0.982:2	0/1:0,193:31:193:1.00:2	0/1:0,152:31:152:1.00:2	0/1:0,190:32:190:1.00:2	0/1:102,94:32:196:0.480:2	0/1:0,175:32:175:1.00:2	0/1:0,191:32:191:1.00:2
chr3	111805346	rs377543671	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,89:31:168:0.530:2	./.	./.	./.	./.
chr3	111821711	rs139531193	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,42:30:98:0.429:2	./.	./.	./.
chr3	111821747	rs16859190	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,7:30:18:0.389:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	111828423	rs340167	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,136:32:136:1.00:2	0/1:0,124:32:124:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,186:33:186:1.00:2	0/1:0,156:32:156:1.00:2	0/1:0,169:32:169:1.00:2	0/1:0,148:32:148:1.00:2	0/1:1,191:32:192:0.995:2	0/1:0,191:33:191:1.00:2	0/1:0,159:33:159:1.00:2	0/1:0,191:33:191:1.00:2
chr3	111842431	rs16859261	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,8:30:19:0.421:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	111842539	rs34879456	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	111851997	rs76741797	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:32:15:0.533:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	111887788	rs73853324	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:32:12:0.500:2	./.	./.	./.	./.	./.	./.	0/1:30,34:33:64:0.531:2	./.
chr3	111888130	rs140783319	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,40:30:97:0.412:2
chr3	111898387	rs74367861	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:32,32:29:64:0.500:2	0/1:16,15:29:31:0.484:2	./.	./.	./.	./.	./.	0/1:18,29:28:47:0.617:2	0/1:30,29:30:59:0.492:2	./.	0/1:49,38:30:87:0.437:2
chr3	111901031	rs192301584	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,42:32:95:0.442:2	./.	./.	./.
chr3	111901099	rs74840030	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,16:29:57:0.281:2	./.
chr3	111918215	rs28516377	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,35:32:35:1.00:2	0/1:15,5:32:20:0.250:2	0/1:23,15:32:38:0.395:2	0/1:17,17:32:34:0.500:2	0/1:18,11:32:29:0.379:2	./.	./.	./.
chr3	111918216	rs13098660	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,21:29:45:0.467:2	0/1:7,19:28:26:0.731:2	0/1:3,4:30:7:0.571:2	0/1:0,35:32:35:1.00:2	0/1:14,6:31:20:0.300:2	0/1:0,37:30:37:1.00:2	0/1:0,34:30:34:1.00:2	0/1:2,27:30:29:0.931:2	0/1:16,25:31:41:0.610:2	0/1:1,45:30:46:0.978:2	0/1:3,84:29:87:0.966:2
chr3	111921116	rs9288938	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,95:32:101:0.941:2	0/1:63,48:31:112:0.432:2	0/1:71,59:31:131:0.454:2	0/1:58,34:32:92:0.370:2	0/1:81,62:32:143:0.434:2	./.	./.	./.
chr3	111921225	rs6781844	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,29:32:57:0.509:2	0/1:18,22:31:40:0.550:2	./.	0/1:0,48:31:48:1.00:2	0/1:22,17:32:39:0.436:2	0/1:0,54:31:54:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,29:32:29:1.00:2	0/1:35,37:33:72:0.514:2	0/1:0,28:32:28:1.00:2	0/1:0,55:32:55:1.00:2
chr3	111923123	rs4434123	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,47:32:74:0.635:2	0/1:22,31:32:53:0.585:2	0/1:3,3:31:6:0.500:2	0/1:0,47:32:47:1.00:2	0/1:26,29:31:55:0.527:2	0/1:0,50:31:50:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,53:32:53:1.00:2	0/1:54,29:32:83:0.349:2	0/1:0,49:32:49:1.00:2	0/1:2,101:31:103:0.981:2
chr3	111958803	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:126,4:33:130:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr3	111962851	rs6768523	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,95:33:97:0.979:2	0/1:35,26:32:62:0.426:2	0/1:42,38:32:80:0.475:2	0/1:32,16:33:48:0.333:2	0/1:63,45:32:108:0.417:2	./.	./.	./.
chr3	111981849	rs9860819	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,143:32:144:0.993:2	0/1:98,89:32:187:0.476:2	0/1:3,172:32:175:0.983:2	0/1:1,119:33:120:0.992:2	0/1:114,80:32:194:0.412:2	./.	0/1:98,62:32:160:0.388:2	0/1:112,63:33:176:0.360:2
chr3	111981878	rs9809384	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,134:31:134:1.00:2	0/1:89,78:32:167:0.467:2	0/1:0,161:32:161:1.00:2	0/1:2,110:32:112:0.982:2	0/1:105,78:32:183:0.426:2	./.	0/1:89,63:32:152:0.414:2	0/1:99,53:32:152:0.349:2
chr3	111981924	rs9809404	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,68:32:68:1.00:2	0/1:34,34:31:68:0.500:2	0/1:1,70:32:71:0.986:2	0/1:1,57:33:58:0.983:2	0/1:41,37:33:78:0.474:2	./.	0/1:45,32:31:77:0.416:2	0/1:69,30:32:99:0.303:2
chr3	111983157	rs62276974	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:40,18:31:58:0.310:2	0/1:9,22:32:31:0.710:2	0/1:5,4:31:9:0.444:2	./.	0/1:39,27:31:66:0.409:2	./.	./.	./.	0/1:64,44:32:108:0.407:2	./.	./.
chr3	111985107	rs9872691	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,84:33:84:1.00:2	0/1:56,36:32:92:0.391:2	0/1:80,46:32:126:0.365:2	0/1:64,35:32:99:0.354:2	0/1:74,52:33:126:0.413:2	./.	./.	./.
chr3	111996554	rs9828502	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,80:33:81:0.988:2	0/1:33,41:32:74:0.554:2	0/1:49,33:32:82:0.402:2	0/1:21,26:32:47:0.553:2	0/1:50,24:31:74:0.324:2	./.	./.	./.
chr3	112052103	rs2276772	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,16:31:18:0.889:2	./.	0/1:6,9:31:15:0.600:2	./.	0/1:6,4:31:10:0.400:2	0/1:2,8:32:10:0.800:2	0/1:3,7:31:10:0.700:2	0/1:2,9:31:11:0.818:2
chr3	112059768	rs1131199	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:0,40:33:40:1.00:2	0/1:5,5:33:10:0.500:2	0/1:63,45:32:108:0.417:2	0/1:0,80:32:80:1.00:2	0/1:27,35:33:62:0.565:2	0/1:60,34:32:94:0.362:2	0/1:48,23:33:71:0.324:2	0/1:52,43:34:95:0.453:2	./.	0/1:50,22:33:72:0.306:2
chr3	112063850	rs2272022	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,26:32:70:0.371:2	./.	0/1:29,32:30:61:0.525:2	0/1:45,33:31:78:0.423:2	0/1:37,22:31:59:0.373:2	0/1:19,16:32:35:0.457:2	0/1:21,14:31:35:0.400:2	0/1:35,33:32:68:0.485:2
chr3	112066562	rs1050572	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,40:32:71:0.563:2	./.	./.
chr3	112185025	rs9288952	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,156:33:156:1.00:2	0/1:0,109:33:109:1.00:2	0/1:17,21:32:38:0.553:2	0/1:1,137:33:138:0.993:2	0/1:0,108:32:108:1.00:2	0/1:95,55:32:150:0.367:2	0/1:0,127:32:127:1.00:2	0/1:1,139:32:140:0.993:2	0/1:107,69:33:176:0.392:2	0/1:1,122:33:123:0.992:2	0/1:1,162:32:163:0.994:2
chr3	112190137	rs2931761	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:31:37:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,62:31:62:1.00:2
chr3	112256630	rs2969896	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,33:29:69:0.478:2	./.	./.	0/1:37,31:30:68:0.456:2	./.	./.
chr3	112262957	rs3736271	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:39,26:30:65:0.400:2	0/1:30,12:30:42:0.286:2	./.	./.	./.	./.	./.	0/1:27,42:28:69:0.609:2	./.	0/1:43,31:30:74:0.419:2	./.
chr3	112289505	rs35692417	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:61,28:33:89:0.315:2	0/1:52,22:32:74:0.297:2	./.	./.	./.	./.	./.	0/1:54,45:32:99:0.455:2	./.	0/1:63,55:32:118:0.466:2	./.
chr3	112299732	rs2292442	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,20:31:51:0.392:2	./.	./.	0/1:35,21:33:56:0.375:2	./.	./.
chr3	112357336	rs116307644	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,27:27:61:0.443:2	./.	./.	./.	./.	./.	./.	./.
chr3	112546306	rs4682119	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,100:32:178:0.562:2	0/1:68,58:32:126:0.460:2	./.	./.	./.	./.	./.	./.	0/1:91,86:33:177:0.486:2	0/1:121,72:31:193:0.373:2	0/1:103,88:32:191:0.461:2
chr3	112546399	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:181,5:33:186:0.027:2	0/1:186,10:32:196:0.051:2	./.	./.	0/1:186,5:28:191:0.026:2	./.	./.
chr3	112546473	rs1997281	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:74,52:32:126:0.413:2	0/1:37,32:32:69:0.464:2	./.	./.	0/1:6,73:31:79:0.924:2	0/1:49,44:30:93:0.473:2	0/1:56,24:32:80:0.300:2	0/1:64,58:32:122:0.475:2	0/1:74,67:32:141:0.475:2	./.	0/1:65,55:31:120:0.458:2
chr3	112642568	rs9865242	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:88,82:33:170:0.482:2	0/1:45,44:33:89:0.494:2	0/1:0,13:33:13:1.00:2	./.	0/1:0,115:33:116:1.00:2	0/1:100,84:32:184:0.457:2	./.	0/1:104,69:33:173:0.399:2	0/1:90,98:34:188:0.521:2	./.	./.
chr3	112647832	rs9826308	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:52,41:32:93:0.441:2	0/1:28,20:33:48:0.417:2	0/1:0,9:32:9:1.00:2	./.	0/1:0,112:32:112:1.00:2	0/1:61,46:32:107:0.430:2	./.	0/1:77,71:33:148:0.480:2	0/1:50,57:34:107:0.533:2	./.	./.
chr3	112647988	rs9868053	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:47,33:33:81:0.413:2	0/1:33,29:33:62:0.468:2	0/1:0,16:32:16:1.00:2	./.	0/1:0,54:32:54:1.00:2	0/1:42,39:32:81:0.481:2	./.	0/1:56,52:32:108:0.481:2	0/1:48,37:34:85:0.435:2	./.	./.
chr3	112648125	rs6438117	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:105,76:32:181:0.420:2	0/1:62,45:32:107:0.421:2	0/1:0,30:32:30:1.00:2	./.	0/1:5,90:31:95:0.947:2	0/1:116,69:32:185:0.373:2	./.	0/1:105,69:32:174:0.397:2	0/1:115,75:33:190:0.395:2	./.	./.
chr3	112648127	rs4596117	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:104,76:32:182:0.422:2	0/1:61,45:31:106:0.425:2	0/1:0,30:32:30:1.00:2	./.	0/1:5,90:31:95:0.947:2	0/1:119,70:32:189:0.370:2	./.	0/1:104,69:32:173:0.399:2	0/1:117,75:33:193:0.391:2	./.	./.
chr3	112648222	rs2171509	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:89,77:33:167:0.464:2	0/1:81,75:33:156:0.481:2	0/1:0,31:32:31:1.00:2	./.	0/1:30,141:32:171:0.825:2	0/1:121,56:32:177:0.316:2	./.	0/1:101,68:33:169:0.402:2	0/1:108,77:33:185:0.416:2	./.	./.
chr3	112648296	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:122,4:32:126:0.032:2	./.	./.	./.	0/1:55,13:31:68:0.191:2	0/1:131,7:31:138:0.051:2	./.	0/1:97,6:32:103:0.058:2	./.	./.	0/1:140,4:32:144:0.028:2
chr3	112710159	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:30:55:0.073:2
chr3	112718352	rs1054263	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,3:30:14:0.214:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	112727184	rs2306857	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:31:35:1.00:2	0/1:0,19:31:19:1.00:2	0/1:2,8:29:10:0.800:2	0/1:34,31:30:65:0.477:2	0/1:0,35:29:35:1.00:2	0/1:0,34:29:34:1.00:2	0/1:1,33:30:34:0.971:2	0/1:0,33:30:33:1.00:2	0/1:33,14:28:47:0.298:2	0/1:15,21:29:36:0.583:2	0/1:41,29:31:70:0.414:2
chr3	112732195	rs147762157	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,63:31:149:0.423:2	0/1:110,79:31:189:0.418:2	./.	./.	./.
chr3	112736437	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:33:103:0.039:2	./.
chr3	112989788	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:31:7:0.857:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	112991312	rs3814398	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,60:31:124:0.484:2	./.	./.	./.	0/1:42,40:32:82:0.488:2	./.
chr3	112991959	rs11710894	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,50:32:104:0.481:2	./.	./.	./.	0/1:64,53:31:117:0.453:2	./.
chr3	112993367	rs13094203	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,27:31:48:0.563:2	./.	./.	0/1:29,15:31:44:0.341:2
chr3	112997554	rs775228	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,41:32:85:0.482:2	./.	0/1:30,39:30:69:0.565:2	./.	0/1:28,25:31:53:0.472:2	0/1:34,28:31:62:0.452:2
chr3	112998265	rs2649878	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,23:31:45:0.511:2	./.	./.	./.	0/1:19,17:30:36:0.472:2	./.
chr3	112998268	rs2650100	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,30:30:63:0.476:2	./.	./.	0/1:25,21:29:46:0.457:2
chr3	113084922	rs35480872	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,42:33:81:0.519:2	./.
chr3	113085143	rs74521061	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,64:32:110:0.582:2	./.	./.	./.	0/1:55,43:32:98:0.439:2	./.
chr3	113127991	rs16845107	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,31:32:82:0.378:2
chr3	113128051	rs13059888	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:37,19:33:56:0.339:2	0/1:12,15:32:27:0.556:2	0/1:0,4:30:4:1.00:2	./.	./.	./.	./.	0/1:33,22:31:55:0.400:2	0/1:35,27:33:62:0.435:2	./.	./.
chr3	113145006	rs73239107	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,97:31:98:0.990:2	./.	./.	./.	0/1:1,81:32:82:0.988:2	./.
chr3	113146130	rs59722850	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,136:29:136:1.00:2	./.	./.	./.	0/1:4,140:30:144:0.972:2	./.
chr3	113165480	rs57006145	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,35:31:95:0.372:2
chr3	113176122	rs7637618	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,28:32:74:0.378:2	./.	./.	./.	0/1:50,40:32:90:0.444:2	./.	./.	0/1:31,44:33:75:0.587:2
chr3	113222036	rs11537650	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,26:32:48:0.542:2	./.	./.	./.	0/1:26,21:33:47:0.447:2	./.	./.	./.
chr3	113251962	rs61738949	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,13:30:26:0.500:2	./.	./.	./.	./.	./.
chr3	113252042	rs3732799	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,54:29:128:0.422:2	./.	./.	./.	./.	./.	./.	0/1:76,40:30:116:0.345:2
chr3	113286405	rs2292511	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,43:30:79:0.544:2	./.	0/1:0,77:31:77:1.00:2	0/1:44,38:30:82:0.463:2	./.	./.	0/1:0,66:31:66:1.00:2	./.
chr3	113320477	rs33990195	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:45,51:29:96:0.531:2	0/1:28,27:31:55:0.491:2	0/1:4,7:29:11:0.636:2	./.	./.	0/1:52,45:28:97:0.464:2	./.	0/1:50,41:30:91:0.451:2	0/1:68,65:30:133:0.489:2	./.	./.
chr3	113323787	rs3732797	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:23,25:32:48:0.521:2	0/1:12,14:32:26:0.538:2	0/1:5,3:28:8:0.375:2	./.	./.	0/1:28,22:31:50:0.440:2	./.	0/1:38,46:31:84:0.548:2	0/1:32,37:31:69:0.536:2	./.	./.
chr3	113329939	rs34023543	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,55:33:122:0.458:2
chr3	113329948	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,6:34:194:0.031:2	./.	./.	./.	./.
chr3	113346572	rs41271373	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,49:33:124:0.395:2	./.	./.	./.	./.	./.	./.	./.
chr3	113373930	rs930818	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:30:81:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,5:32:5:1.00:2	0/1:1,97:31:98:0.990:2	0/1:0,67:30:67:1.00:2	0/1:0,85:30:85:1.00:2	0/1:0,81:30:81:1.00:2	0/1:0,110:30:110:1.00:2	0/1:0,105:31:105:1.00:2	0/1:0,74:30:74:1.00:2	0/1:0,124:30:124:1.00:2
chr3	113376107	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,6:28:97:0.062:2	./.	./.	./.	./.	./.	./.
chr3	113376113	rs62265537	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,13:31:56:0.232:2	./.	./.	0/1:77,5:32:82:0.061:2	./.	./.	./.
chr3	113376119	rs62265538	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,14:29:76:0.184:2	./.	./.	0/1:75,8:31:83:0.096:2	./.	./.	./.
chr3	113377361	rs9813630	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,74:30:74:1.00:2	0/1:3,35:29:38:0.921:2	0/1:4,9:30:13:0.692:2	./.	0/1:53,46:29:99:0.465:2	0/1:1,118:29:119:0.992:2	./.	0/1:69,53:30:122:0.434:2	./.	./.	./.
chr3	113377505	rs16861271	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,20:32:52:0.385:2	0/1:26,25:31:51:0.490:2	./.	./.	./.	./.	0/1:33,29:32:64:0.468:2	0/1:39,42:30:82:0.519:2
chr3	113378461	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,10:33:100:0.100:2	./.	./.	./.	./.
chr3	113379168	rs187780774	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,93:32:188:0.495:2	./.	./.	./.	./.
chr3	113379865	rs9866806	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,50:31:51:1.00:2	0/1:1,20:32:21:0.952:2	./.	./.	0/1:29,22:30:51:0.431:2	0/1:0,51:31:51:1.00:2	./.	0/1:21,16:31:37:0.432:2	./.	./.	./.
chr3	113440624	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:32:147:0.027:2	./.	./.	./.
chr3	113440651	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:31:155:0.026:2	./.	./.	./.
chr3	113441818	rs34588634	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:76,53:32:129:0.411:2	0/1:55,40:32:95:0.421:2	./.	./.	0/1:52,26:32:78:0.333:2	./.	./.	./.	./.	./.	./.
chr3	113499922	rs202005300	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,9:23:100:0.090:2
chr3	113505106	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2	./.	./.	./.	./.	./.
chr3	113524266	.	G	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:61,16:29:77:0.208:2	./.	./.	0/1:90,21:24:111:0.189:2	0/1:92,22:22:114:0.193:2	0/1:85,25:25:110:0.227:2	0/1:77,21:24:98:0.214:2	0/1:91,29:27:120:0.242:2	0/1:97,19:23:116:0.164:2	0/1:90,27:31:117:0.231:2	0/1:87,22:28:109:0.202:2
chr3	113588445	rs1469559	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:31:11:0.455:2	./.	./.	./.	0/1:23,18:33:41:0.439:2	0/1:48,30:33:78:0.385:2	./.	./.	./.
chr3	113594377	rs13079383	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:24,24:30:48:0.500:2	0/1:9,14:32:23:0.609:2	./.	./.	0/1:0,23:32:23:1.00:2	./.	0/1:16,15:32:31:0.484:2	0/1:31,28:32:59:0.475:2	0/1:0,54:33:54:1.00:2	0/1:30,20:32:50:0.400:2	0/1:51,47:32:98:0.480:2
chr3	113655207	rs3765114	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:31:9:0.625:2	./.	0/1:16,23:31:39:0.590:2	0/1:38,37:30:75:0.493:2	0/1:41,28:32:69:0.406:2	0/1:43,21:31:64:0.328:2	0/1:42,34:32:76:0.447:2	0/1:37,31:32:68:0.456:2	./.
chr3	113673125	rs11921691	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:44,30:32:74:0.405:2	0/1:21,25:33:46:0.543:2	0/1:5,6:34:11:0.545:2	./.	0/1:56,48:32:104:0.462:2	0/1:56,44:32:100:0.440:2	0/1:44,74:33:118:0.627:2	0/1:0,129:33:129:1.00:2	0/1:46,29:34:75:0.387:2	0/1:40,28:33:68:0.412:2	0/1:47,41:33:88:0.466:2
chr3	113679589	rs12629415	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:37,28:33:65:0.431:2	0/1:13,9:32:22:0.409:2	./.	./.	./.	./.	./.	0/1:12,36:32:48:0.750:2	./.	./.	./.
chr3	113720517	rs6784095	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:65,69:31:134:0.515:2	0/1:58,67:31:125:0.536:2	./.	./.	./.	./.	./.	0/1:82,73:31:155:0.471:2	./.	./.	./.
chr3	113858350	rs2251177	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,129:31:129:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,166:31:166:1.00:2	0/1:0,174:31:175:1.00:2	0/1:1,173:31:174:0.994:2	0/1:0,194:31:194:1.00:2	0/1:0,195:31:195:1.00:2	0/1:0,190:32:190:1.00:2	0/1:0,122:31:123:1.00:2	0/1:0,181:31:181:1.00:2
chr3	113890789	rs3732783	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,24:29:40:0.600:2	./.	./.
chr3	113890815	rs6280	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:30:53:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,6:29:6:1.00:2	0/1:1,76:29:77:0.987:2	0/1:0,70:29:70:1.00:2	0/1:0,56:29:56:1.00:2	0/1:0,78:29:78:1.00:2	0/1:42,51:29:93:0.548:2	0/1:36,19:30:55:0.345:2	0/1:0,53:29:53:1.00:2	0/1:0,47:28:47:1.00:2
chr3	113955164	rs3732782	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,49:32:50:0.980:2	0/1:0,33:32:33:1.00:2	./.	0/1:21,27:33:48:0.563:2	0/1:37,17:31:54:0.315:2	0/1:37,14:32:51:0.275:2	0/1:0,31:31:31:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,62:33:62:1.00:2	0/1:44,25:32:69:0.362:2	0/1:0,59:32:59:1.00:2
chr3	113955187	rs3732781	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,18:32:57:0.316:2	0/1:27,8:32:35:0.229:2	./.	./.	0/1:40,27:33:67:0.403:2	0/1:0,55:32:55:1.00:2
chr3	113955265	rs6438190	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,68:30:69:0.986:2	0/1:1,35:31:36:0.972:2	0/1:4,5:29:9:0.556:2	0/1:35,36:30:71:0.507:2	0/1:47,36:30:84:0.434:2	0/1:60,32:30:92:0.348:2	0/1:0,49:30:49:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,70:31:71:1.00:2	0/1:51,26:31:77:0.338:2	0/1:0,67:30:67:1.00:2
chr3	113955320	rs6438191	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,71:30:72:0.986:2	0/1:1,33:31:35:0.971:2	0/1:5,4:28:9:0.444:2	0/1:29,29:31:58:0.500:2	0/1:38,39:30:77:0.506:2	0/1:52,34:30:87:0.395:2	0/1:0,78:31:78:1.00:2	0/1:0,74:31:74:1.00:2	0/1:1,74:31:76:0.987:2	0/1:46,24:32:70:0.343:2	0/1:0,68:31:69:1.00:2
chr3	113955652	rs111785883	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,28:32:61:0.459:2	./.	./.
chr3	113955820	rs3732780	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,99:30:99:1.00:2	0/1:0,63:30:63:1.00:2	./.	0/1:71,47:30:118:0.398:2	./.	./.	0/1:68,54:30:122:0.443:2	0/1:64,73:29:137:0.533:2	0/1:62,51:31:113:0.451:2	./.	./.
chr3	114012907	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:32:156:0.026:2
chr3	114058091	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:33:160:0.025:2
chr3	115571364	rs3821560	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:40,47:32:87:0.540:2	0/1:34,22:32:56:0.393:2	0/1:9,4:32:13:0.308:2	./.	0/1:80,88:32:168:0.524:2	./.	0/1:157,6:34:163:0.037:2	./.	./.	./.	./.
chr3	115805388	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:33:196:0.020:2	./.	./.	./.	./.
chr3	118621500	rs34908332	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,85:31:170:0.500:2	./.	./.	0/1:0,163:32:163:1.00:2
chr3	118621664	rs36052974	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,69:32:139:0.496:2	0/1:49,45:32:94:0.479:2	./.	./.	./.	0/1:108,83:31:191:0.435:2	./.	./.	./.	0/1:0,153:31:153:1.00:2	./.
chr3	118647563	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:35:56:0.071:2	./.	./.
chr3	118649060	rs2903250	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,50:32:96:0.521:2	0/1:33,29:31:62:0.468:2	0/1:15,6:30:21:0.286:2	0/1:58,49:31:107:0.458:2	0/1:0,89:31:89:1.00:2	0/1:0,85:30:85:1.00:2	0/1:0,73:32:73:1.00:2	0/1:71,47:31:118:0.398:2	0/1:0,92:32:92:1.00:2	0/1:0,77:31:77:1.00:2	./.
chr3	118865332	rs11550908	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:33:9:0.444:2	0/1:67,53:31:120:0.442:2	0/1:63,50:30:113:0.442:2	./.	./.	./.	./.	./.	./.
chr3	118865609	rs10934483	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:32:5:1.00:2	0/1:38,47:32:85:0.553:2	0/1:39,26:32:65:0.400:2	./.	./.	./.	./.	./.	./.
chr3	118865801	rs4077931	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:14,22:33:36:0.611:2	0/1:14,7:33:21:0.333:2	0/1:2,3:27:5:0.600:2	./.	0/1:26,15:32:41:0.366:2	./.	0/1:24,11:31:35:0.314:2	0/1:39,33:32:72:0.458:2	0/1:18,24:33:42:0.571:2	./.	./.
chr3	118865970	rs4077930	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,24:32:67:0.358:2	0/1:43,41:31:84:0.488:2	./.	./.	0/1:36,22:30:58:0.379:2	0/1:0,81:31:81:1.00:2
chr3	118866376	rs56317615	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:22,22:30:44:0.500:2	0/1:20,9:30:29:0.310:2	./.	0/1:34,36:30:70:0.514:2	./.	./.	./.	0/1:36,34:29:70:0.486:2	0/1:42,34:31:76:0.447:2	./.	./.
chr3	118867047	rs9289122	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,44:32:95:0.463:2	0/1:29,22:32:51:0.431:2	0/1:0,13:33:13:1.00:2	0/1:41,34:33:75:0.453:2	0/1:0,40:32:40:1.00:2	0/1:38,38:33:76:0.500:2	0/1:22,18:32:40:0.450:2	0/1:33,22:33:55:0.400:2	0/1:48,41:34:89:0.461:2	0/1:36,39:32:75:0.520:2	./.
chr3	118909159	rs9840317	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:32:75:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,82:31:82:1.00:2	0/1:15,28:29:43:0.651:2	0/1:0,67:30:67:1.00:2	0/1:0,41:31:41:1.00:2	0/1:1,74:30:75:0.987:2	0/1:1,90:31:91:0.989:2	0/1:0,75:31:75:1.00:2	0/1:0,96:31:96:1.00:2
chr3	118913124	rs139295857	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,35:32:77:0.455:2	./.	./.	./.	./.	./.
chr3	118917913	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:32:175:0.023:2	./.	./.	./.
chr3	118945796	rs3764779	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,9:33:24:0.375:2	0/1:85,66:33:151:0.437:2	./.	0/1:77,90:32:167:0.539:2	0/1:68,72:33:140:0.514:2	0/1:90,75:32:165:0.455:2	0/1:72,82:33:154:0.532:2	0/1:73,72:33:145:0.497:2	./.
chr3	118948716	rs4422294	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:20,40:31:60:0.667:2	0/1:16,11:32:27:0.407:2	./.	0/1:29,29:31:58:0.500:2	./.	0/1:26,44:31:71:0.629:2	0/1:42,19:32:61:0.311:2	./.	0/1:48,50:32:98:0.510:2	0/1:44,31:31:75:0.413:2	0/1:0,92:31:93:1.00:2
chr3	119118104	rs4688001	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,83:33:83:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,116:33:116:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,107:32:108:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,139:33:139:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,121:32:121:1.00:2
chr3	119132956	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,15:29:41:0.366:2	./.	./.	./.	./.	./.
chr3	119133183	rs3732413	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,12:31:25:0.480:2	0/1:10,10:32:20:0.500:2	./.	0/1:12,23:33:35:0.657:2	0/1:9,9:33:18:0.500:2	0/1:0,30:32:30:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,40:32:40:1.00:2	0/1:21,16:30:37:0.432:2	0/1:0,30:32:30:1.00:2	0/1:0,34:32:34:1.00:2
chr3	119133554	rs61740281	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,18:30:26:0.692:2	./.
chr3	119134391	rs3732414	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,12:32:23:0.522:2	./.	./.	./.	./.	./.	./.	./.
chr3	119134933	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:32:90:0.044:2	./.	./.	./.	./.	./.
chr3	119177054	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:33:151:0.026:2	./.	./.
chr3	119196166	rs3732420	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:108,86:30:194:0.443:2	0/1:68,48:30:116:0.414:2	0/1:1,8:28:9:0.889:2	./.	0/1:105,90:29:195:0.462:2	0/1:101,93:29:194:0.479:2	0/1:116,74:30:190:0.389:2	./.	0/1:119,73:30:194:0.380:2	0/1:106,81:30:187:0.433:2	./.
chr3	119219573	rs11539377	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,84:33:139:0.604:2	./.	./.	./.	./.	./.	./.	./.
chr3	119236104	rs57168946	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,14:31:47:0.298:2	./.	./.	./.	./.	./.	./.	./.
chr3	119263680	rs2228017	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,70:31:152:0.461:2	./.	0/1:102,76:30:178:0.427:2	0/1:87,56:30:143:0.392:2	0/1:0,152:31:152:1.00:2	./.	./.	0/1:2,160:31:162:0.988:2
chr3	119301139	rs20568	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,72:30:124:0.581:2	./.	./.	./.	./.	./.	0/1:33,33:32:66:0.500:2	./.
chr3	119305169	rs20569	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:31:9:0.556:2	./.	./.	./.	./.	0/1:63,62:32:125:0.496:2	0/1:48,51:32:99:0.515:2	0/1:43,43:31:86:0.500:2	./.
chr3	119305379	rs25676	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,53:32:53:1.00:2	./.	0/1:19,22:32:41:0.537:2	0/1:28,29:32:57:0.509:2	0/1:19,24:32:43:0.558:2	./.	0/1:33,20:33:53:0.377:2	0/1:0,66:32:67:1.00:2
chr3	119327653	rs1723969	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,8:32:16:0.500:2	0/1:54,60:33:114:0.526:2	./.	./.	./.	0/1:72,73:32:146:0.503:2	0/1:74,64:33:138:0.464:2	0/1:47,40:33:87:0.460:2	./.
chr3	119327670	rs61733987	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,72:32:140:0.514:2	./.	./.	./.	./.	./.	./.	./.
chr3	119328321	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:143,4:31:147:0.027:2	./.	./.	./.	./.	./.	./.
chr3	119328383	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:29:113:0.035:2	./.	./.
chr3	119331874	rs2272270	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,8:32:10:0.800:2	./.	./.	./.	./.	0/1:40,27:32:67:0.403:2	0/1:38,28:33:66:0.424:2	0/1:17,30:33:47:0.638:2	./.
chr3	119331892	rs2272269	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,8:30:9:0.889:2	./.	./.	./.	./.	0/1:41,34:29:75:0.453:2	0/1:34,23:30:57:0.404:2	0/1:17,32:30:49:0.653:2	./.
chr3	119338492	rs61733986	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,7:30:20:0.350:2	./.	./.	./.	./.	0/1:73,43:31:116:0.371:2	0/1:54,44:32:98:0.449:2	0/1:39,50:32:89:0.562:2	./.
chr3	119361415	rs1985724	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,5:34:25:0.200:2	./.	./.	./.	0/1:14,13:33:27:0.481:2	0/1:30,14:34:44:0.318:2
chr3	119367390	rs2688643	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,114:28:114:1.00:2	0/1:0,49:28:49:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,114:29:114:1.00:2	0/1:0,116:29:116:1.00:2	0/1:0,131:29:131:1.00:2	0/1:0,135:28:136:1.00:2	0/1:0,129:29:129:1.00:2	0/1:1,141:29:142:0.993:2	0/1:0,97:29:97:1.00:2	0/1:0,139:30:139:1.00:2
chr3	119378815	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,8:17:24:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	119378872	rs1880040	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,71:32:134:0.530:2	0/1:75,65:31:140:0.464:2	0/1:73,54:31:127:0.425:2	./.	0/1:87,81:31:168:0.482:2	./.	0/1:60,42:32:102:0.412:2	0/1:2,105:32:107:0.981:2
chr3	119378977	rs2873788	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,69:31:125:0.552:2	./.	./.	0/1:41,39:32:80:0.488:2
chr3	119379186	rs4688023	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,41:30:98:0.418:2	0/1:55,48:29:103:0.466:2	0/1:46,28:30:74:0.378:2	./.	0/1:51,49:29:100:0.490:2	./.	0/1:31,35:30:66:0.530:2	0/1:0,60:30:60:1.00:2
chr3	119396135	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,28:7:132:0.212:2
chr3	119421963	rs7612861	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,42:31:67:0.627:2	0/1:33,33:30:66:0.500:2	./.	./.	./.	./.	./.	./.
chr3	119426307	rs9848716	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:33:45:1.00:2	0/1:0,21:32:21:1.00:2	0/1:5,7:32:12:0.583:2	0/1:25,17:32:42:0.405:2	0/1:15,23:31:38:0.605:2	0/1:0,45:32:45:1.00:2	0/1:16,13:32:29:0.448:2	0/1:1,64:32:65:0.985:2	0/1:24,15:33:39:0.385:2	0/1:22,18:33:40:0.450:2	0/1:0,65:32:65:1.00:2
chr3	119434527	rs6438544	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,105:32:105:1.00:2	0/1:0,62:33:62:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,156:32:157:1.00:2	0/1:1,116:32:118:0.991:2	0/1:0,161:32:161:1.00:2	0/1:0,133:32:133:1.00:2	0/1:0,159:32:159:1.00:2	0/1:0,156:33:156:1.00:2	0/1:0,155:33:155:1.00:2	0/1:0,144:33:144:1.00:2
chr3	119463040	rs191110908	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,12:31:29:0.414:2	./.	./.	./.	./.
chr3	119533910	rs4058490	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:29:54:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,88:30:88:1.00:2	0/1:0,104:29:104:1.00:2	0/1:0,74:30:74:1.00:2	0/1:0,94:30:94:1.00:2	0/1:0,102:29:102:1.00:2	0/1:0,94:30:94:1.00:2	0/1:0,68:30:68:1.00:2	0/1:0,59:29:59:1.00:2
chr3	119585484	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,5:32:112:0.045:2	./.	./.
chr3	119886548	rs9858566	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,15:31:15:1.00:2	0/1:0,14:33:14:1.00:2	./.	0/1:0,15:32:15:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,20:34:20:1.00:2	0/1:5,10:33:15:0.667:2	0/1:0,21:32:21:1.00:2
chr3	119886776	rs902790	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:29:47:1.00:2	0/1:1,20:31:21:0.952:2	0/1:1,3:31:4:0.750:2	0/1:0,53:30:53:1.00:2	0/1:0,40:29:40:1.00:2	0/1:0,46:28:46:1.00:2	0/1:0,28:28:28:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,40:31:40:1.00:2	0/1:20,16:31:36:0.444:2	0/1:0,51:30:51:1.00:2
chr3	119905619	rs74395262	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,9:32:30:0.300:2	./.	./.	0/1:13,18:32:31:0.581:2
chr3	120067797	rs4676696	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.	./.	./.
chr3	120123733	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:33:171:0.023:2	./.
chr3	120129834	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:33:79:0.051:2	./.	./.	./.	./.
chr3	120321075	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,5:33:75:0.067:2	./.	./.	./.
chr3	120321100	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,5:32:92:0.054:2	./.	./.	./.
chr3	120321108	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,5:29:91:0.055:2	./.	./.	./.
chr3	120352003	rs146482816	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,33:28:69:0.478:2	./.	./.
chr3	120389316	rs2255543	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:32:72:1.00:2	0/1:1,32:32:33:0.970:2	0/1:0,11:32:11:1.00:2	0/1:44,33:31:77:0.429:2	0/1:35,28:32:63:0.444:2	0/1:36,38:31:74:0.514:2	0/1:49,28:32:77:0.364:2	0/1:0,93:32:93:1.00:2	0/1:44,42:32:86:0.488:2	0/1:50,42:32:92:0.457:2	0/1:53,42:33:95:0.442:2
chr3	120413074	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,4:34:192:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr3	120500093	rs3732401	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,56:31:124:0.452:2	./.	./.
chr3	120500193	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,77:31:156:0.494:2	./.
chr3	120924764	rs74730846	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,10:31:25:0.400:2	./.	0/1:4,10:32:14:0.714:2	0/1:17,6:32:23:0.261:2	0/1:13,11:31:24:0.458:2	./.
chr3	120976051	rs17249244	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,8:33:10:0.800:2	./.	./.	0/1:15,19:33:34:0.559:2	0/1:21,16:33:37:0.432:2	0/1:26,14:33:40:0.350:2	./.	./.	./.
chr3	121100283	rs17740066	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,58:31:118:0.492:2	./.	./.	./.	./.	0/1:82,52:32:134:0.388:2	0/1:87,74:32:161:0.460:2
chr3	121151812	rs3218634	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,61:33:120:0.508:2	./.	./.	./.	./.
chr3	121154974	rs1381057	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,152:31:153:0.993:2	0/1:0,79:31:79:1.00:2	0/1:14,5:30:19:0.263:2	0/1:1,181:31:182:0.995:2	0/1:90,71:30:161:0.441:2	0/1:1,177:30:178:0.994:2	0/1:91,81:31:172:0.471:2	0/1:0,184:30:184:1.00:2	0/1:0,183:32:183:1.00:2	0/1:85,74:31:159:0.465:2	0/1:117,80:31:197:0.406:2
chr3	121186422	rs532411	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,50:31:117:0.427:2	./.	./.	./.	./.
chr3	121208176	rs3218651	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:102,66:31:168:0.393:2	0/1:55,33:30:88:0.375:2	./.	./.	0/1:73,64:29:137:0.467:2	./.	./.	./.	./.	./.	0/1:101,89:30:190:0.468:2
chr3	121208833	rs3218649	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,29:32:29:1.00:2	0/1:0,15:32:15:1.00:2	./.	0/1:10,20:32:30:0.667:2	0/1:13,11:30:24:0.458:2	0/1:0,17:32:17:1.00:2	./.	0/1:0,34:33:34:1.00:2	0/1:0,35:34:35:1.00:2	0/1:11,10:32:21:0.476:2	0/1:18,28:33:46:0.609:2
chr3	121208864	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,18:30:38:0.474:2
chr3	121208894	rs3218636	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,16:30:30:0.533:2	./.	./.	./.	./.	./.	./.
chr3	121228960	rs487848	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,82:31:191:0.432:2	./.	./.	./.	./.
chr3	121238749	rs702018	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:32:82:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,115:31:115:1.00:2	0/1:0,96:31:96:1.00:2	0/1:0,88:31:88:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,145:31:145:1.00:2	0/1:0,126:32:126:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,90:32:90:1.00:2
chr3	121238863	rs35766343	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,59:32:123:0.480:2	./.	./.	0/1:42,45:32:87:0.517:2	./.	./.	./.	./.
chr3	121258368	rs36065146	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,90:32:189:0.476:2	./.	./.	0/1:79,56:32:135:0.415:2	./.	./.	./.	./.
chr3	121263720	rs702017	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,128:31:128:1.00:2	0/1:0,83:31:83:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,100:30:100:1.00:2	0/1:1,96:30:97:0.990:2	0/1:0,135:30:135:1.00:2	0/1:0,90:31:90:1.00:2	0/1:0,111:30:111:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,126:31:126:1.00:2	0/1:0,115:31:115:1.00:2
chr3	121304933	rs9813391	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	0/1:29,20:30:50:0.408:2	./.	0/1:28,27:32:55:0.491:2	./.	0/1:24,27:31:52:0.529:2
chr3	121340536	rs4676684	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,44:27:78:0.564:2	0/1:17,16:28:33:0.485:2	0/1:2,3:30:5:0.600:2	0/1:25,35:27:60:0.583:2	./.	./.	./.	./.	./.	./.	./.
chr3	121340550	rs148128733	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,51:31:94:0.543:2	./.	./.	./.	./.	./.	./.
chr3	121345694	rs34299530	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,29:31:62:0.468:2
chr3	121350966	rs9869984	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:32:39:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,46:32:46:1.00:2
chr3	121351257	rs77852202	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,59:30:118:0.500:2	0/1:59,53:31:112:0.473:2	./.	./.
chr3	121351315	rs150627065	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,22:34:82:0.272:2
chr3	121351338	rs2070180	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:18,17:32:35:0.486:2	0/1:12,6:32:18:0.333:2	./.	./.	0/1:0,50:32:50:1.00:2	./.	./.	0/1:1,55:31:56:0.982:2	0/1:0,59:32:59:1.00:2	0/1:27,30:32:57:0.526:2	./.
chr3	121353254	rs2070179	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,21:32:53:0.396:2	0/1:15,9:31:24:0.375:2	0/1:4,3:33:7:0.429:2	0/1:34,42:32:76:0.553:2	0/1:0,55:32:55:1.00:2	0/1:0,44:32:44:1.00:2	0/1:2,65:32:67:0.970:2	0/1:1,70:32:71:0.986:2	0/1:0,62:33:62:1.00:2	0/1:0,57:32:57:1.00:2	0/1:1,59:33:60:0.983:2
chr3	121354583	rs3772126	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,60:32:60:1.00:2	0/1:31,34:32:65:0.523:2	./.	./.	./.	0/1:30,40:33:70:0.571:2
chr3	121361787	rs2070178	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:31:10:0.400:2	0/1:50,26:31:76:0.342:2	./.	./.	0/1:50,29:30:79:0.367:2	./.	./.	0/1:31,21:31:52:0.404:2	0/1:31,36:30:67:0.537:2
chr3	121363680	rs34440810	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,43:33:106:0.406:2	./.	./.	0/1:2,84:32:86:0.977:2	0/1:56,39:33:95:0.411:2	./.	./.
chr3	121412892	rs11915822	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,6:33:21:0.286:2	./.	./.	./.	0/1:62,34:33:96:0.354:2	./.	./.	0/1:50,56:33:106:0.528:2	./.
chr3	121413637	rs34833153	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:70,65:32:135:0.481:2	0/1:53,35:32:88:0.398:2	0/1:13,7:32:20:0.350:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	121414061	rs1127412	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,104:31:104:1.00:2	0/1:56,54:32:110:0.491:2	./.	./.	./.	0/1:63,73:32:136:0.537:2
chr3	121414217	rs35674179	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:29:5:0.600:2	./.	./.	./.	0/1:31,20:31:51:0.392:2	./.	./.	0/1:30,21:30:51:0.412:2	./.
chr3	121415610	rs33988592	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:75,109:32:184:0.592:2	0/1:85,63:32:148:0.426:2	./.	./.	0/1:2,178:31:180:0.989:2	./.	./.	0/1:3,189:32:192:0.984:2	0/1:1,187:33:188:0.995:2	0/1:105,92:32:197:0.467:2	./.
chr3	121415720	rs3732410	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,180:32:184:0.978:2	0/1:110,84:32:194:0.433:2	./.	./.	./.	0/1:108,87:32:195:0.446:2
chr3	121416623	rs3732407	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,83:31:84:0.988:2	0/1:48,43:33:91:0.473:2	./.	./.	./.	0/1:100,76:32:176:0.432:2
chr3	121417605	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:34:188:0.021:2
chr3	121418687	rs114442031	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,5:32:146:0.034:2	./.	./.
chr3	121435621	rs9832267	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,29:34:92:0.315:2	0/1:20,18:32:38:0.474:2	0/1:8,5:32:13:0.385:2	0/1:52,47:33:99:0.475:2	0/1:0,43:32:43:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,65:33:65:1.00:2	0/1:1,100:33:101:0.990:2	0/1:1,85:34:86:0.988:2	0/1:0,67:33:67:1.00:2	0/1:0,114:33:114:1.00:2
chr3	121435624	rs9812411	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,29:33:91:0.319:2	0/1:20,18:31:38:0.474:2	0/1:8,5:31:13:0.385:2	0/1:52,47:32:99:0.475:2	0/1:0,43:31:43:1.00:2	0/1:0,83:31:83:1.00:2	0/1:0,65:32:65:1.00:2	0/1:1,100:32:101:0.990:2	0/1:0,86:32:86:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,114:32:114:1.00:2
chr3	121500699	rs17849995	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,17:30:34:0.500:2	0/1:8,9:30:17:0.529:2	0/1:0,2:28:2:1.00:2	0/1:22,10:27:32:0.313:2	./.	./.	./.	./.	./.	./.	./.
chr3	121507231	rs1141528	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,62:32:130:0.477:2	0/1:60,62:33:122:0.508:2	./.	./.
chr3	121518055	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,5:26:119:0.042:2	./.
chr3	121518088	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:31:151:0.026:2	./.
chr3	121526204	rs4543051	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,184:32:186:0.989:2	0/1:1,121:32:122:0.992:2	0/1:1,32:31:33:0.970:2	0/1:122,76:31:198:0.384:2	0/1:3,192:31:195:0.985:2	./.	0/1:111,87:31:198:0.439:2	0/1:2,189:31:191:0.990:2	0/1:0,188:32:188:1.00:2	0/1:1,187:31:189:0.995:2	./.
chr3	121544925	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:33:107:0.037:2
chr3	121544926	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:33:112:0.036:2
chr3	121544930	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:31:115:0.035:2
chr3	121563355	rs9884018	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,46:30:135:0.341:2	./.	./.	./.	./.	./.	./.	0/1:73,79:30:152:0.520:2
chr3	121641680	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:30:94:0.043:2	./.	./.	./.
chr3	121641693	rs2293616	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,40:32:68:0.588:2	0/1:33,20:32:53:0.377:2	./.	0/1:41,25:32:66:0.379:2	0/1:0,34:32:34:1.00:2	./.	./.	0/1:42,34:32:76:0.447:2	0/1:1,72:33:73:0.986:2	0/1:26,32:33:58:0.552:2	0/1:40,46:33:86:0.535:2
chr3	121642048	rs3817601	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:41,46:29:87:0.529:2	0/1:39,28:31:68:0.418:2	./.	0/1:50,49:29:99:0.495:2	0/1:0,90:30:90:1.00:2	./.	0/1:77,4:29:81:0.049:2	0/1:53,60:30:113:0.531:2	0/1:1,98:31:99:0.990:2	0/1:43,50:31:93:0.538:2	0/1:73,57:30:130:0.438:2
chr3	121643163	rs2293611	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,26:32:27:0.963:2	0/1:6,8:33:14:0.571:2	0/1:5,6:32:11:0.545:2	./.	0/1:13,6:33:19:0.316:2	0/1:15,20:31:35:0.571:2
chr3	121643170	rs2257109	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,18:30:31:0.581:2	0/1:14,9:31:23:0.391:2	0/1:1,3:32:4:0.750:2	0/1:6,10:29:16:0.625:2	0/1:0,22:31:22:1.00:2	./.	./.	0/1:11,7:30:18:0.389:2	0/1:0,27:32:27:1.00:2	0/1:7,13:32:20:0.650:2	0/1:25,14:32:39:0.359:2
chr3	121643804	rs2257212	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:98,91:33:189:0.481:2	0/1:71,48:33:119:0.403:2	0/1:11,18:32:29:0.621:2	0/1:114,81:32:195:0.415:2	0/1:2,162:32:164:0.988:2	./.	0/1:196,4:33:200:0.020:2	0/1:118,77:32:195:0.395:2	0/1:0,192:33:192:1.00:2	0/1:101,92:32:193:0.477:2	0/1:101,91:33:192:0.474:2
chr3	121646641	rs1143670	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,28:30:59:0.475:2	0/1:18,19:28:37:0.514:2	0/1:6,6:31:12:0.500:2	0/1:51,25:30:76:0.329:2	0/1:0,63:30:63:1.00:2	./.	./.	0/1:52,30:30:82:0.366:2	0/1:0,83:30:83:1.00:2	0/1:31,35:29:66:0.530:2	0/1:69,44:30:113:0.389:2
chr3	121647286	rs1143671	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,19:32:33:0.576:2	0/1:8,26:32:34:0.765:2	./.	0/1:16,18:32:34:0.529:2	0/1:0,27:32:27:1.00:2	./.	./.	0/1:17,5:26:22:0.227:2	0/1:0,34:33:34:1.00:2	0/1:11,17:32:28:0.607:2	0/1:23,18:32:41:0.439:2
chr3	121648168	rs1143672	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,44:32:97:0.454:2	0/1:26,25:32:51:0.490:2	0/1:4,8:30:12:0.667:2	0/1:61,51:31:112:0.455:2	0/1:0,54:31:54:1.00:2	./.	./.	0/1:63,48:32:111:0.432:2	0/1:0,103:32:103:1.00:2	0/1:65,41:31:106:0.387:2	0/1:67,49:32:116:0.422:2
chr3	121712051	rs2877561	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,123:32:124:0.992:2	0/1:1,88:32:89:0.989:2	0/1:0,19:32:19:1.00:2	0/1:0,107:33:107:1.00:2	0/1:0,104:31:104:1.00:2	./.	./.	0/1:0,100:31:100:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,92:32:92:1.00:2	0/1:70,57:32:127:0.449:2
chr3	121712805	rs3915061	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:7,8:27:15:0.533:2	./.	./.	0/1:11,6:26:17:0.353:2	./.	./.	./.	0/1:8,6:27:14:0.429:2	./.	0/1:10,6:26:16:0.375:2	./.
chr3	121825197	rs2681417	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,139:30:139:1.00:2	0/1:0,101:30:101:1.00:2	0/1:21,7:30:28:0.250:2	0/1:0,175:29:175:1.00:2	0/1:104,86:29:190:0.453:2	0/1:1,174:29:175:0.994:2	0/1:103,87:29:190:0.458:2	0/1:0,186:29:186:1.00:2	0/1:2,183:30:185:0.989:2	0/1:0,158:30:158:1.00:2	0/1:0,162:30:162:1.00:2
chr3	121828181	rs115021223	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,73:33:170:0.429:2	./.	./.	./.
chr3	121838319	rs1129055	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:31:12:0.500:2	./.	./.	./.	0/1:30,25:31:55:0.455:2	0/1:29,32:30:61:0.525:2	./.	0/1:2,56:32:58:0.966:2	./.
chr3	122003045	rs2036400	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:32:62:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,68:33:68:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,56:32:56:1.00:2
chr3	122003757	rs1801725	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,32:31:32:1.00:2	./.	0/1:89,53:31:142:0.373:2	./.	./.	./.	./.	0/1:59,56:32:115:0.487:2	./.
chr3	122003832	rs1801726	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,106:33:106:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,115:32:115:1.00:2	0/1:0,136:32:136:1.00:2	./.	0/1:0,92:32:92:1.00:2	0/1:0,110:32:110:1.00:2
chr3	122056432	rs17589	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:33:72:1.00:2	0/1:0,47:31:47:1.00:2	0/1:4,9:32:13:0.692:2	0/1:40,40:31:80:0.500:2	0/1:36,25:32:61:0.410:2	0/1:53,36:31:89:0.404:2	0/1:3,74:32:77:0.961:2	0/1:49,37:32:86:0.430:2	0/1:54,40:32:94:0.426:2	./.	0/1:2,90:32:93:0.978:2
chr3	122060404	rs34173813	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:32:12:0.500:2	./.	0/1:38,36:31:74:0.486:2	./.	./.	./.	0/1:38,29:33:67:0.433:2	0/1:31,28:31:59:0.475:2	./.
chr3	122078706	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,3:27:15:0.200:2	./.	0/1:16,9:27:25:0.360:2	./.	./.	./.	./.	./.
chr3	122128637	rs200828064	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,63:32:140:0.450:2
chr3	122133830	rs3749213	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:24,34:31:58:0.586:2	0/1:19,12:29:31:0.387:2	./.	./.	0/1:29,29:30:58:0.500:2	./.	0/1:29,32:30:61:0.525:2	0/1:33,53:30:86:0.616:2	./.	./.	0/1:54,50:29:105:0.481:2
chr3	122146533	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:34:48:0.083:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	122186188	rs4678193	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:32:94:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,121:32:121:1.00:2	0/1:0,76:31:76:1.00:2	0/1:0,103:31:103:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,122:32:122:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,137:32:137:1.00:2
chr3	122247397	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:34:135:0.030:2	./.	./.
chr3	122259606	rs9851180	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,141:32:142:1.00:2	0/1:0,104:32:104:1.00:2	0/1:10,16:31:26:0.615:2	0/1:97,83:32:180:0.461:2	0/1:79,62:32:141:0.440:2	./.	0/1:92,93:32:185:0.503:2	0/1:1,183:32:184:0.995:2	0/1:95,86:33:181:0.475:2	0/1:93,82:32:176:0.469:2	0/1:106,87:32:193:0.451:2
chr3	122259640	rs28365795	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,20:31:33:0.606:2	0/1:95,80:29:176:0.457:2	./.	./.	./.	./.	0/1:101,90:30:191:0.471:2	0/1:106,85:29:191:0.445:2	./.
chr3	122274757	rs73192127	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:49,30:32:79:0.380:2	0/1:31,17:33:48:0.354:2	./.	./.	0/1:45,36:33:81:0.444:2	./.	0/1:57,52:32:109:0.477:2	0/1:73,47:32:120:0.392:2	./.	./.	0/1:63,46:32:110:0.422:2
chr3	122277268	rs34006803	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,21:33:49:0.429:2	0/1:23,16:32:39:0.410:2	./.
chr3	122288210	rs2332285	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,111:32:112:0.991:2	0/1:1,72:32:73:0.986:2	0/1:8,5:32:13:0.385:2	0/1:66,70:32:136:0.515:2	0/1:98,65:32:163:0.399:2	./.	0/1:110,65:32:175:0.371:2	0/1:0,167:32:167:1.00:2	./.	0/1:47,77:32:124:0.621:2	0/1:101,80:32:181:0.442:2
chr3	122290579	rs2036342	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:51,45:32:96:0.469:2	0/1:33,31:31:64:0.484:2	./.	0/1:1,91:31:92:0.989:2	./.	0/1:65,33:30:98:0.337:2	0/1:55,30:31:85:0.353:2	./.	./.	0/1:0,98:31:98:1.00:2	0/1:55,54:32:110:0.495:2
chr3	122296638	rs1875272	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:29,20:30:49:0.408:2	0/1:30,15:29:45:0.333:2	./.	./.	./.	./.	./.	0/1:34,31:30:65:0.477:2	./.	./.	0/1:17,18:31:35:0.514:2
chr3	122296647	rs7632426	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:21,23:28:44:0.523:2	0/1:14,25:30:39:0.641:2	0/1:1,4:30:5:0.800:2	./.	0/1:29,34:29:63:0.540:2	./.	0/1:2,57:30:59:0.966:2	0/1:23,28:29:51:0.549:2	0/1:19,28:30:47:0.596:2	./.	./.
chr3	122345870	rs17208928	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,9:31:14:0.643:2	0/1:62,44:31:106:0.415:2	./.	./.	0/1:50,26:32:76:0.342:2	0/1:70,51:31:121:0.421:2	./.	0/1:52,46:32:98:0.469:2	0/1:65,68:32:133:0.511:2
chr3	122354037	rs1106346	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,10:33:15:0.667:2	0/1:68,88:33:156:0.564:2	./.	./.	0/1:3,136:33:139:0.978:2	0/1:73,66:32:140:0.475:2	0/1:61,57:33:118:0.483:2	0/1:2,134:33:136:0.985:2	0/1:70,87:33:157:0.554:2
chr3	122354716	rs61754895	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,27:30:48:0.563:2	./.	./.	0/1:29,24:30:53:0.453:2	0/1:32,27:31:59:0.458:2	./.	0/1:30,27:29:57:0.474:2	0/1:17,33:32:50:0.660:2
chr3	122354792	rs12489170	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,42:33:82:0.512:2	./.	0/1:53,44:33:97:0.454:2	0/1:47,45:33:92:0.489:2	./.
chr3	122418750	rs11719086	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,7:31:9:0.778:2	./.	./.	0/1:29,32:31:61:0.525:2	0/1:13,16:32:29:0.552:2	0/1:31,30:32:61:0.492:2	0/1:35,28:34:63:0.444:2	./.	./.
chr3	122419083	rs13093808	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:31:7:0.571:2	./.	./.	./.	0/1:12,14:32:26:0.538:2	./.	0/1:47,15:33:62:0.242:2	./.	./.
chr3	122419292	rs7632072	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,14:28:36:0.389:2	./.	./.	./.
chr3	122420077	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,4:32:62:0.065:2	./.	./.	./.	./.	./.	./.	./.
chr3	122422748	rs74759699	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,80:29:189:0.423:2
chr3	122437321	rs7645033	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:29:48:1.00:2	0/1:0,31:29:31:1.00:2	0/1:0,11:30:11:1.00:2	0/1:24,38:30:62:0.613:2	./.	0/1:0,62:29:62:1.00:2	0/1:0,25:29:25:1.00:2	0/1:0,51:29:51:1.00:2	0/1:31,40:29:71:0.563:2	0/1:0,48:30:48:1.00:2	0/1:0,70:29:70:1.00:2
chr3	122459477	rs61732313	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:31:8:0.625:2	./.	./.	./.	0/1:42,37:30:79:0.468:2	./.	0/1:65,39:30:104:0.375:2	./.	./.
chr3	122474121	rs61756481	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:32:9:0.444:2	./.	./.	0/1:69,56:31:125:0.448:2	./.	./.	./.	./.	./.
chr3	122512498	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,7:30:118:0.060:2	./.	./.	./.	./.	./.
chr3	122512542	rs76805079	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,19:26:51:0.373:2	0/1:15,14:27:29:0.483:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	122630323	rs2303982	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,36:33:36:1.00:2	0/1:0,24:32:24:1.00:2	./.	0/1:0,38:31:38:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,44:32:44:1.00:2	0/1:39,26:32:65:0.400:2	0/1:1,76:32:77:0.987:2	0/1:0,39:33:39:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,45:31:45:1.00:2
chr3	122630346	rs2303983	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:31:27:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,2:34:2:1.00:2	0/1:0,36:33:36:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,52:32:52:1.00:2	0/1:45,26:33:71:0.366:2	0/1:1,70:33:71:0.986:2	0/1:0,36:33:36:1.00:2	0/1:0,41:33:41:1.00:2	0/1:0,44:33:44:1.00:2
chr3	122630372	rs61996303	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,15:28:34:0.441:2	./.	./.
chr3	122632436	rs2276781	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,14:27:38:0.368:2	./.	./.	./.
chr3	122641102	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:31:146:0.027:2	./.
chr3	122642590	rs2276778	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,47:31:47:1.00:2	0/1:0,40:32:40:1.00:2	./.	0/1:1,45:32:46:0.978:2	0/1:0,56:31:56:1.00:2	0/1:22,33:31:55:0.600:2	0/1:12,17:31:29:0.586:2	0/1:37,22:32:59:0.373:2	0/1:0,52:32:52:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,55:31:55:1.00:2
chr3	122645277	rs2276777	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,26:32:61:0.426:2	./.	./.	./.
chr3	122645304	rs2276776	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,26:32:64:0.406:2	./.	./.	./.
chr3	122645522	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:32:112:0.036:2	./.	./.	./.	./.	./.
chr3	122646734	rs2276775	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,39:31:71:0.549:2	./.	0/1:40,51:32:91:0.560:2	./.	./.	./.
chr3	122646828	rs2276774	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	0/1:31,49:32:80:0.613:2	./.	0/1:53,43:32:96:0.448:2	./.	./.	./.
chr3	122821671	rs2241963	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:33:76:1.00:2	0/1:0,55:32:55:1.00:2	0/1:6,5:34:11:0.455:2	0/1:0,88:33:88:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,78:33:78:1.00:2	0/1:0,109:32:109:1.00:2	0/1:1,63:33:64:0.984:2	0/1:2,97:33:99:0.980:2
chr3	122843110	rs861375	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,122:32:122:1.00:2	0/1:0,76:32:76:1.00:2	0/1:13,8:32:21:0.381:2	0/1:2,156:32:160:0.987:2	0/1:112,77:32:189:0.407:2	0/1:111,73:31:184:0.397:2	0/1:121,73:32:194:0.376:2	0/1:6,156:32:163:0.963:2	0/1:98,98:33:196:0.500:2	0/1:74,72:32:146:0.493:2	0/1:0,140:32:140:1.00:2
chr3	122864436	rs8739	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:30,22:33:52:0.423:2	0/1:18,13:33:31:0.419:2	0/1:1,3:32:4:0.750:2	./.	0/1:18,15:32:33:0.455:2	./.	0/1:0,44:32:44:1.00:2	0/1:32,27:32:59:0.458:2	0/1:0,56:33:56:1.00:2	0/1:19,12:33:31:0.387:2	0/1:0,52:33:52:1.00:2
chr3	122869147	rs114278681	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,10:31:34:0.294:2	./.	./.
chr3	122880191	rs8935	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:28,24:29:52:0.462:2	0/1:16,20:29:36:0.556:2	0/1:6,4:27:10:0.400:2	./.	0/1:35,32:29:67:0.478:2	0/1:50,37:31:87:0.425:2	0/1:0,67:30:67:1.00:2	0/1:42,34:29:76:0.447:2	./.	0/1:31,22:29:53:0.415:2	./.
chr3	123019049	rs113442895	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,8:30:22:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	123047641	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,4:34:67:0.060:2	./.	./.	./.	./.	./.	./.	./.
chr3	123167249	rs4678027	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr3	123376066	rs181663420	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,85:32:196:0.434:2
chr3	123383039	rs149530842	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,94:32:186:0.505:2	./.	./.	./.	./.
chr3	123411589	rs40305	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,53:31:55:0.964:2	0/1:0,47:32:47:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,87:32:87:1.00:2	0/1:66,56:32:122:0.459:2	0/1:46,37:32:83:0.446:2	./.	./.	0/1:0,65:32:65:1.00:2	0/1:0,79:32:79:1.00:2	0/1:1,56:32:57:0.982:2
chr3	123418913	rs865358	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:33:102:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,140:31:140:1.00:2	0/1:0,119:31:119:1.00:2	0/1:0,149:31:149:1.00:2	0/1:1,139:31:140:0.993:2	0/1:0,142:32:142:1.00:2	0/1:0,139:33:139:1.00:2	0/1:0,116:32:116:1.00:2	0/1:0,112:32:112:1.00:2
chr3	123419011	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:33:157:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	123419288	rs12172926	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,57:30:124:0.460:2	./.	./.	./.
chr3	123419573	rs3732487	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,94:31:194:0.485:2	./.	./.	./.
chr3	123419733	rs3732486	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,24:32:47:0.511:2	./.	./.	./.
chr3	123427648	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:31:177:0.023:2	0/1:157,6:29:163:0.037:2
chr3	123427660	.	T	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,3:33:21:0.143:2	0/1:183,11:33:194:0.057:2	./.	0/1:182,11:29:193:0.057:2	0/1:187,7:32:194:0.036:2	0/1:180,16:33:196:0.082:2	0/1:192,6:31:198:0.030:2	0/1:172,8:30:180:0.044:2	0/1:154,11:33:165:0.067:2
chr3	123451773	rs9833275	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:31:69:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,108:31:108:1.00:2	0/1:0,113:31:113:1.00:2	0/1:0,116:32:116:1.00:2	0/1:0,124:32:124:1.00:2	0/1:0,109:33:109:1.00:2	0/1:0,76:32:76:1.00:2	0/1:1,118:32:119:0.992:2
chr3	123452836	rs35912339	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,29:31:58:0.500:2	0/1:16,17:31:33:0.515:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	123452838	rs4678047	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,30:31:57:0.526:2	0/1:16,17:32:33:0.515:2	0/1:0,3:32:3:1.00:2	0/1:33,53:31:86:0.616:2	0/1:0,89:31:89:1.00:2	0/1:48,42:32:90:0.467:2	0/1:29,43:32:72:0.597:2	0/1:1,93:32:94:0.989:2	0/1:0,104:32:104:1.00:2	0/1:23,17:31:40:0.425:2	0/1:0,66:32:66:1.00:2
chr3	123457893	rs9840993	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:30:16:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,2:30:2:1.00:2	0/1:1,21:31:22:0.955:2	0/1:0,15:30:15:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,17:32:17:1.00:2
chr3	123471237	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:32:81:0.049:2
chr3	123512627	rs28497577	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,14:30:34:0.412:2	./.	./.	0/1:41,33:31:74:0.446:2	./.	./.	./.
chr3	123634046	rs2700373	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:3,68:32:71:0.958:2	0/1:1,40:31:41:0.976:2	./.	0/1:0,56:31:56:1.00:2	./.	0/1:0,48:31:48:1.00:2	0/1:32,24:31:56:0.429:2	0/1:2,93:30:95:0.979:2	0/1:42,42:32:84:0.500:2	0/1:32,41:32:73:0.562:2	0/1:48,36:31:84:0.429:2
chr3	123665901	rs375437364	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:33:106:0.038:2	./.	./.	./.
chr3	123665902	rs17310144	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,88:32:88:1.00:2	0/1:0,60:31:60:1.00:2	./.	0/1:45,40:32:85:0.471:2	./.	0/1:4,86:32:90:0.956:2	0/1:45,33:32:78:0.423:2	0/1:2,102:31:104:0.981:2	0/1:47,52:33:99:0.525:2	0/1:43,60:32:103:0.583:2	0/1:71,42:32:113:0.372:2
chr3	123667854	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:182,4:33:186:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr3	123671405	rs202104544	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,87:30:195:0.446:2	./.	./.	./.	./.	./.
chr3	123813737	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:35:140:0.029:2
chr3	123946895	rs2293641	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:120,70:33:190:0.368:2	./.	./.	./.	./.	./.	./.	./.
chr3	123988027	rs146360002	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,52:32:106:0.491:2	./.	./.
chr3	123988039	rs2272486	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,12:30:12:1.00:2	0/1:0,74:29:74:1.00:2	0/1:0,135:29:135:1.00:2	./.	0/1:0,141:30:141:1.00:2	0/1:0,129:29:129:1.00:2	0/1:55,48:29:103:0.466:2	0/1:0,62:29:62:1.00:2	0/1:0,88:29:88:1.00:2
chr3	123988085	rs200361341	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:31:87:0.046:2	./.	./.	./.	./.	./.
chr3	124044949	rs2289778	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,102:32:103:1.00:2	0/1:0,70:32:70:1.00:2	0/1:10,13:30:23:0.565:2	./.	0/1:0,146:31:146:1.00:2	0/1:1,163:31:164:0.994:2	0/1:0,180:32:180:1.00:2	0/1:0,181:32:181:1.00:2	0/1:0,149:32:149:1.00:2	0/1:0,128:32:128:1.00:2	0/1:85,81:32:166:0.488:2
chr3	124048764	rs2276740	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,72:32:72:1.00:2	./.	./.	./.	./.	./.	./.	0/1:20,27:32:47:0.574:2
chr3	124103807	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:173,4:32:177:0.023:2	./.	./.	./.	./.	./.	./.
chr3	124114068	rs9841322	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,49:31:103:0.476:2	0/1:25,15:31:40:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	124196094	rs2289843	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,27:32:61:0.443:2	./.	./.	./.	0/1:51,48:33:99:0.485:2	./.	0/1:79,66:33:145:0.455:2
chr3	124281844	rs78202770	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,57:31:91:0.626:2	./.	./.	./.
chr3	124351316	rs1708303	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,104:31:104:1.00:2	0/1:1,50:32:51:0.980:2	0/1:12,9:31:21:0.429:2	0/1:77,71:31:148:0.480:2	./.	./.	0/1:59,51:30:110:0.464:2	0/1:1,144:31:145:0.993:2	0/1:100,65:32:166:0.394:2	0/1:0,131:31:131:1.00:2	0/1:2,117:31:119:0.983:2
chr3	124351424	rs1660038	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:32:63:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,5:32:5:1.00:2	0/1:32,46:32:78:0.590:2	./.	./.	0/1:30,39:32:69:0.565:2	0/1:0,113:32:113:1.00:2	0/1:46,34:31:80:0.425:2	0/1:0,82:32:82:1.00:2	0/1:0,67:32:67:1.00:2
chr3	124352728	rs652863	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,25:34:72:0.347:2
chr3	124376653	rs106520	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:41,17:29:58:0.293:2	0/1:22,20:31:42:0.476:2	./.	0/1:23,24:30:47:0.511:2	./.	./.	0/1:31,28:30:59:0.475:2	./.	0/1:48,22:31:70:0.314:2	0/1:0,53:31:53:1.00:2	./.
chr3	124379748	rs333290	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:106,72:32:178:0.404:2	0/1:67,48:32:115:0.417:2	0/1:23,16:32:39:0.410:2	0/1:113,82:32:195:0.421:2	./.	./.	./.	0/1:2,193:32:197:0.990:2	0/1:112,86:32:198:0.434:2	0/1:0,193:33:193:1.00:2	0/1:0,194:33:194:1.00:2
chr3	124379817	rs333289	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:107,73:32:180:0.406:2	0/1:99,71:30:170:0.418:2	0/1:27,22:30:49:0.449:2	0/1:105,76:31:181:0.420:2	./.	./.	./.	0/1:2,173:31:175:0.989:2	0/1:105,76:32:181:0.420:2	0/1:1,186:32:188:0.995:2	0/1:1,168:30:169:0.994:2
chr3	124412634	rs333283	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,20:32:52:0.385:2	0/1:19,8:32:27:0.296:2	0/1:1,4:32:5:0.800:2	0/1:0,35:31:35:1.00:2	./.	0/1:33,17:32:50:0.340:2	0/1:0,15:32:15:1.00:2	0/1:0,28:32:28:1.00:2	0/1:54,17:32:71:0.239:2	0/1:1,24:32:25:0.960:2	0/1:0,57:32:57:1.00:2
chr3	124412691	rs16835881	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,5:33:22:0.227:2	./.	./.	./.
chr3	124418846	rs2289427	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,28:31:68:0.412:2	./.	./.	0/1:39,42:31:81:0.519:2
chr3	124418879	rs56047676	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,24:28:46:0.522:2	./.	0/1:12,12:29:24:0.500:2	./.
chr3	124436210	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,6:31:77:0.078:2	./.	./.	./.	./.	./.	./.	./.
chr3	124456742	rs1801019	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,18:32:36:0.500:2	0/1:15,14:31:29:0.483:2	./.	0/1:40,23:32:63:0.365:2	0/1:22,12:29:34:0.353:2	./.	./.	0/1:25,30:32:55:0.545:2	./.	0/1:15,14:31:29:0.483:2	./.
chr3	124462808	rs13146	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:40,37:31:78:0.481:2	0/1:24,22:31:46:0.478:2	./.	0/1:61,28:30:89:0.315:2	0/1:43,28:30:71:0.394:2	./.	0/1:68,53:30:121:0.438:2	0/1:53,64:30:117:0.547:2	./.	0/1:51,31:30:82:0.378:2	./.
chr3	124487911	rs199781704	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,11:15:100:0.111:2	./.	./.	./.	./.	./.	./.
chr3	124515308	rs1803825	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,13:29:32:0.406:2	0/1:12,7:31:19:0.368:2	./.	0/1:20,33:31:53:0.623:2	0/1:33,22:30:55:0.400:2	0/1:32,21:31:53:0.396:2	0/1:41,33:29:74:0.446:2	0/1:28,17:31:45:0.378:2	./.	0/1:10,22:29:32:0.688:2	./.
chr3	124515314	rs2291085	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,24:30:53:0.453:2	0/1:39,30:29:69:0.435:2	./.	./.	./.	./.
chr3	124515395	rs2291086	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,31:29:61:0.508:2	0/1:17,29:30:46:0.630:2	./.	./.	./.	./.
chr3	124515498	rs2291087	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,26:31:61:0.426:2	0/1:23,10:33:33:0.303:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	124515509	rs2291088	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,47:31:83:0.566:2	0/1:27,42:30:69:0.609:2	./.	./.	0/1:27,46:31:73:0.630:2	./.	0/1:22,40:31:62:0.645:2	./.
chr3	124515646	rs2291090	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,22:33:68:0.324:2	0/1:25,25:32:50:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	124627024	rs1127233	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:2,102:32:104:0.981:2	0/1:4,75:32:79:0.949:2	0/1:13,9:33:22:0.409:2	./.	./.	./.	0/1:91,69:32:160:0.431:2	./.	0/1:73,66:33:139:0.475:2	./.	./.
chr3	124627150	rs184489086	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:31:176:0.023:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	124646498	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:170,4:33:174:0.023:2	./.	./.	./.	./.	./.	./.
chr3	124646594	rs4679392	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:81,97:32:178:0.545:2	0/1:52,61:32:113:0.540:2	./.	0/1:86,91:32:177:0.514:2	0/1:97,71:31:168:0.423:2	./.	./.	0/1:91,97:32:188:0.516:2	0/1:87,92:33:179:0.514:2	./.	0/1:95,84:31:179:0.469:2
chr3	124646693	rs148289912	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,73:31:144:0.507:2	0/1:58,43:31:101:0.426:2	./.	./.	./.	./.
chr3	124646837	rs4679394	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,12:30:20:0.600:2	0/1:5,15:29:20:0.750:2	./.	./.	0/1:6,9:31:15:0.600:2	./.	./.	./.
chr3	124692689	rs2270778	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:34,47:33:81:0.580:2	0/1:33,18:31:51:0.353:2	./.	0/1:51,33:32:84:0.393:2	./.	0/1:65,34:32:99:0.343:2	./.	0/1:1,83:32:84:0.988:2	0/1:0,104:33:104:1.00:2	./.	0/1:0,118:32:118:1.00:2
chr3	124728626	rs6438869	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,22:30:65:0.338:2	0/1:23,17:28:40:0.425:2	0/1:1,6:30:7:0.857:2	0/1:39,34:29:73:0.466:2	0/1:0,50:29:50:1.00:2	0/1:38,27:30:65:0.415:2	0/1:0,45:29:45:1.00:2	0/1:1,73:30:74:0.986:2	./.	0/1:3,74:30:77:0.961:2	./.
chr3	124731485	rs10804567	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,144:33:147:0.980:2	0/1:0,98:32:98:1.00:2	0/1:9,15:32:24:0.625:2	0/1:108,91:33:199:0.457:2	0/1:0,185:32:185:1.00:2	0/1:90,99:32:189:0.524:2	0/1:0,183:33:183:1.00:2	0/1:0,178:33:178:1.00:2	0/1:86,99:33:185:0.535:2	0/1:0,187:32:187:1.00:2	./.
chr3	124731689	rs78680419	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,85:32:196:0.434:2	./.	./.	./.
chr3	124731730	rs191466494	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,85:32:192:0.443:2	./.	./.	./.	./.
chr3	124731939	rs199822816	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:157,16:14:173:0.092:2	./.	./.	./.	./.	./.	./.	0/1:159,20:12:179:0.112:2
chr3	124731944	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,10:17:154:0.065:2	./.
chr3	124732419	rs202026679	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,17:31:90:0.189:2	./.	./.	./.
chr3	124732618	rs6790837	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,145:33:145:1.00:2	0/1:3,84:33:87:0.966:2	0/1:10,12:33:22:0.545:2	0/1:75,70:33:145:0.483:2	0/1:4,97:32:101:0.960:2	0/1:67,58:32:125:0.464:2	0/1:2,106:32:108:0.981:2	0/1:74,82:33:156:0.526:2	0/1:69,66:34:135:0.489:2	0/1:1,112:33:113:0.991:2	./.
chr3	124738107	rs59232004	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:31:71:1.00:2	0/1:2,42:32:44:0.955:2	0/1:5,5:31:10:0.500:2	0/1:55,51:31:106:0.481:2	0/1:2,76:31:78:0.974:2	0/1:51,47:31:98:0.480:2	0/1:1,95:31:96:0.990:2	0/1:1,123:32:124:0.992:2	0/1:51,44:32:95:0.463:2	0/1:0,81:31:81:1.00:2	./.
chr3	124739892	rs6438874	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,144:31:144:1.00:2	0/1:0,83:31:83:1.00:2	0/1:14,8:30:22:0.364:2	0/1:101,81:31:182:0.445:2	0/1:2,172:30:174:0.989:2	0/1:84,88:30:172:0.512:2	0/1:0,164:30:164:1.00:2	0/1:1,188:30:189:0.995:2	0/1:91,89:32:180:0.494:2	0/1:0,151:31:151:1.00:2	./.
chr3	124746049	rs2981546	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,66:29:67:0.985:2	0/1:0,26:28:26:1.00:2	./.	0/1:27,36:29:63:0.571:2	0/1:0,52:28:52:1.00:2	0/1:25,16:28:41:0.390:2	0/1:1,55:28:56:0.982:2	0/1:1,68:28:69:0.986:2	0/1:26,30:29:56:0.536:2	0/1:0,44:28:44:1.00:2	./.
chr3	124746182	rs2333041	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,109:32:109:1.00:2	0/1:0,66:32:66:1.00:2	0/1:18,7:30:25:0.280:2	0/1:88,60:32:148:0.405:2	0/1:3,121:31:124:0.976:2	0/1:72,65:31:137:0.474:2	0/1:4,138:32:142:0.972:2	0/1:0,128:31:128:1.00:2	0/1:81,60:32:142:0.426:2	0/1:2,107:32:110:0.982:2	./.
chr3	124746296	rs79038354	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,83:32:175:0.477:2
chr3	124746318	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,4:30:102:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr3	124746347	rs4404487	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,60:28:61:0.984:2	0/1:0,33:27:33:1.00:2	0/1:5,5:31:10:0.500:2	0/1:34,34:28:68:0.500:2	0/1:0,56:28:56:1.00:2	0/1:19,30:27:49:0.612:2	0/1:0,40:27:40:1.00:2	0/1:0,54:28:54:1.00:2	0/1:43,43:30:86:0.500:2	0/1:0,59:29:59:1.00:2	./.
chr3	124748114	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,67:31:142:0.472:2
chr3	124748226	rs2860440	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,31:29:32:0.969:2	0/1:0,29:30:29:1.00:2	0/1:2,3:28:5:0.600:2	0/1:24,19:29:43:0.442:2	0/1:2,22:27:24:0.917:2	0/1:19,16:28:35:0.457:2	0/1:0,32:28:32:1.00:2	0/1:3,50:29:54:0.943:2	0/1:25,14:28:39:0.359:2	0/1:0,46:28:48:1.00:2	./.
chr3	124802881	rs2981483	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:40,33:33:73:0.452:2	0/1:29,27:31:56:0.482:2	./.	./.	0/1:69,34:31:103:0.330:2	./.	0/1:80,45:32:125:0.360:2	./.	0/1:0,78:32:78:1.00:2	0/1:56,31:32:87:0.356:2	0/1:0,84:32:84:1.00:2
chr3	124802888	rs2981482	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:37,31:33:68:0.456:2	0/1:28,21:31:49:0.429:2	./.	./.	0/1:63,34:31:97:0.351:2	./.	0/1:70,39:32:109:0.358:2	./.	0/1:0,78:33:78:1.00:2	0/1:52,25:32:77:0.325:2	0/1:0,71:33:71:1.00:2
chr3	124826408	rs6773138	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,68:33:149:0.456:2	./.
chr3	124826601	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:32:171:0.023:2	./.	./.	./.	./.	./.
chr3	124829057	rs11714448	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,9:26:38:0.237:2	./.
chr3	124837684	rs621383	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:28:90:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,10:26:10:1.00:2	0/1:0,61:30:61:1.00:2	0/1:0,86:28:86:1.00:2	0/1:0,82:28:82:1.00:2	0/1:0,118:28:118:1.00:2	0/1:1,125:29:126:0.992:2	0/1:0,106:29:106:1.00:2	0/1:0,73:28:73:1.00:2	0/1:0,71:28:71:1.00:2
chr3	124839470	rs863642	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,3:33:3:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,43:33:44:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,44:31:44:1.00:2
chr3	124896668	rs2993631	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:29,20:32:49:0.408:2	0/1:16,19:32:35:0.543:2	./.	./.	./.	./.	./.	0/1:20,37:32:57:0.649:2	./.	./.	./.
chr3	124896755	rs200031423	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,55:33:100:0.550:2	./.
chr3	124906162	rs34985183	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,84:31:154:0.545:2	./.	./.	./.
chr3	124951821	rs1053738	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,50:32:103:0.485:2	0/1:27,33:32:60:0.550:2	0/1:0,6:31:6:1.00:2	0/1:50,33:31:83:0.398:2	0/1:1,57:32:58:0.983:2	0/1:0,86:32:86:1.00:2	0/1:39,23:32:62:0.371:2	0/1:0,50:32:50:1.00:2	0/1:0,91:33:91:1.00:2	0/1:0,71:33:71:1.00:2	0/1:49,39:33:88:0.443:2
chr3	125032346	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:32:167:0.024:2	./.
chr3	125199103	rs35547631	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,45:32:105:0.429:2	./.	./.	./.	./.	./.	./.
chr3	125249340	rs2294053	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,8:31:21:0.381:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	125266387	rs35535572	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:33:15:0.533:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	125701214	rs139324612	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:34:197:0.020:2	./.	./.	./.	./.
chr3	125701243	rs199629681	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:158,4:31:162:0.025:2	./.	./.	./.	./.	./.	./.
chr3	125701277	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:111,4:31:115:0.035:2	./.	./.	./.	./.	./.	./.
chr3	125725926	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:32:114:0.035:2	./.	./.	./.
chr3	125726048	rs2279819	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,35:32:60:0.583:2	0/1:21,22:32:43:0.512:2	0/1:11,4:31:15:0.267:2	0/1:60,44:33:104:0.423:2	./.	0/1:2,104:33:106:0.981:2	0/1:1,121:33:122:0.992:2	0/1:69,59:33:128:0.461:2	0/1:0,100:33:100:1.00:2	0/1:42,56:33:98:0.571:2	0/1:0,105:32:105:1.00:2
chr3	125775228	rs7613944	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,120:29:122:1.00:2	0/1:0,84:29:84:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,153:30:153:1.00:2	0/1:0,158:29:158:1.00:2	0/1:1,170:30:171:0.994:2	0/1:1,146:30:147:0.993:2	0/1:0,181:30:181:1.00:2	0/1:0,187:31:188:1.00:2	0/1:0,150:29:150:1.00:2	0/1:1,168:29:170:0.994:2
chr3	125775266	rs140883435	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,61:31:150:0.407:2
chr3	125786879	rs4234270	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,109:28:109:1.00:2	0/1:0,74:29:74:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,127:30:127:1.00:2	0/1:0,146:29:146:1.00:2	0/1:0,167:29:167:1.00:2	0/1:0,173:29:173:1.00:2	0/1:2,173:29:175:0.989:2	0/1:0,168:30:168:1.00:2	0/1:0,145:30:146:1.00:2	0/1:0,117:28:117:1.00:2
chr3	125826059	rs1127717	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:12,14:32:26:0.538:2	0/1:5,12:32:17:0.706:2	./.	0/1:12,17:32:29:0.586:2	./.	0/1:11,13:33:24:0.542:2	0/1:20,16:32:36:0.444:2	0/1:19,7:33:26:0.269:2	0/1:15,25:33:40:0.625:2	0/1:14,16:33:30:0.533:2	0/1:15,19:32:34:0.559:2
chr3	125854409	rs2276724	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,19:30:37:0.514:2	0/1:13,7:31:20:0.350:2	./.	./.	./.	./.	./.	./.	0/1:44,17:30:61:0.279:2	./.	./.
chr3	125856695	rs2305230	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,85:31:153:0.556:2	0/1:39,38:32:77:0.494:2	./.	./.	./.	./.	./.	./.	0/1:96,98:32:195:0.505:2	./.	./.
chr3	125865766	rs2886059	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,13:31:30:0.433:2	0/1:7,4:31:11:0.364:2	./.	./.	./.	./.	./.	./.	0/1:30,14:31:44:0.318:2	./.	./.
chr3	125869262	rs372887650	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:153,4:32:157:0.025:2	./.	./.	./.	./.	./.	./.
chr3	125872293	rs16837178	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,22:31:24:0.917:2	./.	./.	./.	./.
chr3	125877352	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:32:107:0.037:2	./.	./.
chr3	125879755	rs143122118	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,33:31:75:0.440:2	./.
chr3	126137558	rs4679242	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,25:32:56:0.455:2	./.	./.	./.	0/1:48,47:31:95:0.495:2	./.	0/1:1,56:31:57:0.982:2	./.
chr3	126138819	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:31:73:0.055:2
chr3	126138889	rs1877967	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,52:30:134:0.388:2	./.	./.	./.	0/1:64,71:30:135:0.526:2	./.	0/1:0,72:30:72:1.00:2	./.
chr3	126142163	rs17690518	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,42:32:87:0.483:2	./.
chr3	126142435	rs200815085	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,3:32:40:0.075:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	126154397	rs117774023	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:29:14:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	126157255	rs191515346	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,47:29:139:0.338:2	./.	./.	0/1:28,45:29:73:0.616:2
chr3	126160641	rs139202046	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,6:31:11:0.545:2	./.	./.	0/1:1,3:32:4:0.750:2
chr3	126180705	rs61736554	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,37:30:102:0.363:2	./.	0/1:33,28:32:61:0.459:2	./.
chr3	126180829	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:31:75:0.053:2	./.	./.
chr3	126191011	rs62264721	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,9:31:17:0.529:2	./.	./.	./.	./.
chr3	126194076	rs812367	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:27:74:1.00:2	0/1:0,39:28:39:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,75:28:75:1.00:2	0/1:64,35:27:99:0.354:2	0/1:0,76:27:76:1.00:2	./.	0/1:0,56:27:56:1.00:2	0/1:1,66:29:67:0.985:2	0/1:1,66:28:67:0.985:2	0/1:0,48:27:48:1.00:2
chr3	126202257	rs1687477	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,16:33:33:0.485:2	./.	0/1:1,3:33:4:0.750:2	0/1:0,60:32:60:1.00:2	0/1:24,42:31:66:0.636:2	0/1:27,28:31:55:0.509:2	./.	0/1:31,44:33:75:0.587:2	0/1:0,47:33:47:1.00:2	0/1:15,20:32:35:0.571:2	0/1:0,62:32:62:1.00:2
chr3	126211282	rs777474	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,8:32:24:0.333:2	./.
chr3	126218167	rs1168595	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,104:29:182:0.571:2	0/1:73,74:31:147:0.503:2	0/1:61,52:31:113:0.460:2	0/1:49,46:30:97:0.484:2	0/1:38,34:29:73:0.472:2
chr3	126219627	rs34025926	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:31:8:0.500:2	./.	./.	./.	./.	0/1:76,70:31:146:0.479:2	./.	./.	./.
chr3	126224847	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:32:60:0.067:2	./.
chr3	126261202	rs1056524	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.
chr3	126261207	rs1056523	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.
chr3	126261345	rs1056522	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,8:31:16:0.500:2	./.	./.	0/1:50,81:31:131:0.618:2	0/1:63,75:31:138:0.543:2	0/1:87,97:31:184:0.527:2	0/1:57,54:32:111:0.486:2	0/1:52,37:31:90:0.416:2	0/1:35,33:32:68:0.485:2
chr3	126268918	rs869463	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:30:11:0.364:2	./.	./.	0/1:49,48:31:97:0.495:2	./.	0/1:66,48:30:115:0.421:2	0/1:41,47:32:88:0.534:2	0/1:39,42:31:81:0.519:2	0/1:51,41:31:92:0.446:2
chr3	126270923	rs34760151	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,44:27:100:0.440:2	./.	./.	./.	./.
chr3	126451937	rs2272487	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,154:31:157:0.981:2	./.	./.	./.
chr3	126707544	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,9:15:43:0.209:2	./.	./.	0/1:24,11:13:35:0.314:2	0/1:45,15:11:60:0.250:2	./.	./.	./.	./.	./.	./.
chr3	126708453	rs6773789	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,25:31:44:0.568:2	0/1:10,9:32:19:0.474:2	0/1:2,4:31:6:0.667:2	0/1:1,62:31:63:0.984:2	0/1:1,83:30:84:0.988:2	./.	./.	0/1:29,33:30:62:0.532:2	0/1:28,29:31:57:0.509:2	0/1:22,21:31:43:0.488:2	./.
chr3	126708459	rs61746811	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,25:31:51:0.490:2	./.
chr3	126722304	rs41266467	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,38:33:79:0.481:2	./.	0/1:21,17:32:38:0.447:2	./.
chr3	126723549	rs28710010	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:29,31:30:60:0.517:2	0/1:16,22:30:38:0.579:2	./.	0/1:52,40:28:92:0.435:2	./.	./.	./.	./.	./.	./.	./.
chr3	126725013	rs61744428	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,71:30:152:0.467:2	./.	./.	./.
chr3	126726705	rs9876615	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:24,25:29:49:0.510:2	0/1:15,16:29:31:0.516:2	./.	0/1:34,28:29:62:0.452:2	./.	./.	./.	./.	./.	./.	./.
chr3	126733053	rs11719489	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr3	126733402	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,4:33:116:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr3	126733406	rs138276286	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,51:31:97:0.526:2	./.	./.	./.
chr3	126735453	rs9858521	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:16,15:31:31:0.484:2	0/1:10,13:32:23:0.565:2	./.	0/1:46,35:29:81:0.432:2	./.	./.	./.	./.	./.	./.	./.
chr3	126737268	rs4679323	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:66,43:30:109:0.394:2	0/1:37,33:31:70:0.471:2	0/1:11,6:28:17:0.353:2	./.	./.	0/1:0,162:29:162:1.00:2	0/1:92,83:29:175:0.474:2	0/1:6,161:29:167:0.964:2	0/1:87,71:30:158:0.449:2	0/1:73,79:29:152:0.520:2	0/1:1,103:29:104:0.990:2
chr3	126741041	rs150052583	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,61:31:129:0.473:2	./.	./.	./.	./.
chr3	126741674	rs60819734	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,63:32:127:0.496:2	./.	./.	./.
chr3	126751582	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:28:12:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	127323830	rs893293	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:0,41:31:41:1.00:2	0/1:4,3:29:7:0.429:2	0/1:1,77:30:78:0.987:2	0/1:0,91:30:91:1.00:2	./.	0/1:44,42:31:86:0.488:2	0/1:0,100:31:100:1.00:2	0/1:40,41:31:81:0.506:2	0/1:38,32:30:70:0.457:2	0/1:0,51:30:51:1.00:2
chr3	127335748	rs57045995	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,59:31:115:0.513:2	./.
chr3	127339645	rs143447982	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,89:31:192:0.464:2	./.	./.	./.
chr3	127379270	rs920232	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,56:30:136:0.412:2	./.	./.	./.
chr3	127379467	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:31:68:0.059:2	./.	./.	./.	./.	./.
chr3	127390328	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,62:31:99:0.626:2	./.	./.	./.	./.
chr3	127394820	rs35703629	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,25:31:42:0.595:2	0/1:24,15:29:39:0.385:2	./.	0/1:20,8:31:28:0.286:2	./.	0/1:12,17:31:29:0.586:2	./.	0/1:23,10:31:33:0.303:2
chr3	127395817	rs35834653	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,48:29:105:0.462:2	./.	./.	./.
chr3	127413881	rs4881	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,84:32:177:0.475:2	./.	./.	./.
chr3	127540635	rs11538698	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,40:30:81:0.494:2	./.	./.	./.	./.
chr3	127641968	rs4141499	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:31:86:1.00:2	0/1:0,50:31:50:1.00:2	0/1:8,8:31:16:0.500:2	0/1:0,74:30:74:1.00:2	0/1:31,43:31:74:0.581:2	./.	0/1:35,22:31:57:0.386:2	0/1:51,43:30:94:0.457:2	0/1:52,34:32:86:0.395:2	0/1:39,32:31:71:0.451:2	0/1:56,74:32:130:0.569:2
chr3	127642814	rs61268888	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:117,79:33:196:0.403:2	./.	./.	./.	./.	./.	./.	./.
chr3	127646677	rs373163160	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:32:138:0.029:2
chr3	127702998	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,4:31:143:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr3	127703085	rs13100951	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:41,42:30:83:0.506:2	0/1:28,24:30:52:0.462:2	0/1:6,3:30:9:0.333:2	./.	0/1:82,50:31:133:0.379:2	./.	0/1:0,120:30:120:1.00:2	./.	0/1:64,54:31:118:0.458:2	./.	0/1:44,52:30:96:0.542:2
chr3	127774557	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:32:164:0.024:2	./.	./.
chr3	127788409	rs147269024	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,16:33:43:0.372:2
chr3	127872531	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.
chr3	127980995	rs61740550	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,18:33:37:0.486:2	0/1:9,9:32:18:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	127983495	rs2811544	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:32:76:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,17:31:17:1.00:2	0/1:1,111:32:112:0.991:2	0/1:0,93:32:93:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,96:32:96:1.00:2	0/1:2,102:32:104:0.981:2	0/1:0,105:32:105:1.00:2	0/1:69,29:32:99:0.296:2	0/1:0,97:32:97:1.00:2
chr3	128181537	rs2953129	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:39,47:31:86:0.547:2	0/1:20,23:32:43:0.535:2	0/1:10,3:33:13:0.231:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	128181777	rs2659690	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,23:29:39:0.590:2	0/1:12,16:29:28:0.571:2	./.	0/1:19,16:29:35:0.457:2	0/1:1,25:28:26:0.962:2	0/1:0,47:29:47:1.00:2	0/1:26,17:30:43:0.395:2	0/1:0,27:28:27:1.00:2	0/1:26,25:30:51:0.490:2	0/1:23,21:30:44:0.477:2	0/1:13,24:29:37:0.649:2
chr3	128182074	rs2981026	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,50:31:110:0.455:2	0/1:30,41:31:71:0.577:2	0/1:9,5:32:14:0.357:2	0/1:73,66:31:139:0.475:2	./.	./.	0/1:82,52:32:134:0.388:2	./.	0/1:62,71:32:133:0.534:2	./.	0/1:62,50:32:112:0.446:2
chr3	128182378	rs13071640	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,5:29:9:0.556:2	0/1:4,7:32:11:0.636:2	./.	0/1:10,4:33:14:0.286:2	./.	./.
chr3	128182816	rs16847447	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,31:30:58:0.534:2	0/1:49,33:30:82:0.402:2	./.	0/1:34,29:31:63:0.460:2	0/1:27,27:30:55:0.500:2	./.
chr3	128199926	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,11:14:102:0.108:2	./.	./.
chr3	128204951	rs2335052	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,44:31:99:0.444:2	./.	./.	0/1:46,38:30:84:0.452:2	./.	./.	0/1:2,54:30:56:0.964:2	0/1:39,27:29:66:0.409:2
chr3	128205860	rs1573858	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,7:25:7:1.00:2	./.	./.	./.	./.	./.
chr3	128292213	rs2734046	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,59:29:59:1.00:2	0/1:0,48:28:48:1.00:2	./.	0/1:57,42:29:99:0.424:2	0/1:1,74:29:75:0.987:2	0/1:1,102:29:103:0.990:2	0/1:81,53:29:134:0.396:2	0/1:1,80:29:81:0.988:2	0/1:0,106:30:106:1.00:2	0/1:0,84:29:84:1.00:2	0/1:58,38:29:96:0.396:2
chr3	128292844	rs2734047	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,7:26:8:0.875:2	0/1:0,35:28:35:1.00:2	0/1:31,17:28:48:0.354:2	0/1:24,24:27:48:0.500:2	0/1:0,31:27:31:1.00:2	0/1:0,42:27:42:1.00:2	0/1:0,33:28:33:1.00:2	0/1:0,33:27:33:1.00:2	0/1:0,41:28:41:1.00:2
chr3	128292858	rs6762732	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:32:9:0.444:2	0/1:24,21:32:45:0.467:2	0/1:28,18:31:47:0.391:2	0/1:38,30:31:68:0.441:2	0/1:19,22:30:41:0.537:2	0/1:2,57:31:59:0.966:2	0/1:0,41:32:41:1.00:2	./.	0/1:27,20:31:47:0.426:2
chr3	128292862	rs73864832	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	0/1:27,22:32:49:0.449:2
chr3	128292904	rs60760821	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,80:30:166:0.482:2	./.	0/1:78,80:31:158:0.506:2	./.	./.	./.
chr3	128344786	rs1126828	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,33:30:67:0.493:2	./.	0/1:40,32:30:73:0.444:2	./.	./.	0/1:39,30:31:69:0.435:2
chr3	128356852	rs1697	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:90,76:32:166:0.458:2	0/1:52,43:32:95:0.453:2	0/1:0,21:32:21:1.00:2	0/1:96,73:32:169:0.432:2	0/1:97,61:31:158:0.386:2	0/1:79,83:31:162:0.512:2	0/1:98,70:32:168:0.417:2	0/1:1,170:32:171:0.994:2	0/1:0,162:33:162:1.00:2	0/1:87,72:32:160:0.453:2	0/1:102,78:32:180:0.433:2
chr3	128525253	rs4548	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:48,50:32:98:0.510:2	0/1:35,22:32:57:0.386:2	./.	./.	./.	./.	0/1:56,75:32:131:0.573:2	0/1:94,53:31:147:0.361:2	./.	./.	./.
chr3	128614185	rs1680778	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:43,34:30:77:0.442:2	0/1:24,28:30:52:0.538:2	./.	./.	0/1:142,6:31:148:0.041:2	0/1:48,59:30:107:0.551:2	0/1:1,158:30:159:0.994:2	0/1:74,60:30:134:0.448:2	0/1:57,47:31:104:0.452:2	0/1:0,77:30:77:1.00:2	./.
chr3	128622922	rs115532916	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,67:31:128:0.523:2	./.	./.	./.	./.	./.	./.	./.
chr3	128627021	rs1683787	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,18:31:28:0.643:2	0/1:17,9:32:26:0.346:2	./.	./.	./.	0/1:36,36:33:72:0.500:2	0/1:0,63:32:63:1.00:2	0/1:76,30:32:106:0.283:2	0/1:45,33:33:78:0.423:2	0/1:0,53:31:53:1.00:2	./.
chr3	128627933	rs876755	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,46:31:96:0.479:2	./.	./.	0/1:43,45:32:88:0.511:2	0/1:34,41:31:75:0.547:2	./.
chr3	128628950	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,46:31:93:0.495:2	./.	./.
chr3	128755953	rs3732430	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,9:31:23:0.391:2	0/1:8,13:30:21:0.619:2	0/1:11,14:29:25:0.560:2	0/1:14,16:33:30:0.533:2	./.	0/1:17,10:33:27:0.370:2	./.	0/1:10,9:32:19:0.474:2
chr3	128758604	rs148837972	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,72:30:150:0.480:2	./.	./.	./.	./.	./.
chr3	128780622	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:30:84:0.048:2	./.	./.	./.	./.
chr3	128781123	rs115005114	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.
chr3	128840238	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:29:102:0.039:2	./.	./.	./.	./.	./.
chr3	128890350	rs4303883	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,78:31:80:0.975:2	0/1:0,45:31:45:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,84:30:84:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,68:30:68:1.00:2	0/1:0,111:31:112:1.00:2	0/1:0,103:31:103:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,104:31:104:1.00:2
chr3	128971113	rs4927953	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:22,16:31:38:0.421:2	0/1:17,22:31:39:0.564:2	./.	0/1:33,36:32:69:0.522:2	./.	./.	./.	./.	0/1:38,26:32:64:0.406:2	./.	./.
chr3	128976396	rs4927910	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:71,48:29:119:0.403:2	0/1:36,36:29:72:0.500:2	./.	0/1:92,70:29:162:0.432:2	./.	./.	./.	./.	0/1:94,63:29:157:0.401:2	./.	./.
chr3	128976451	rs62266876	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:68,61:32:129:0.473:2	0/1:35,32:32:67:0.478:2	./.	0/1:85,66:32:151:0.437:2	./.	./.	./.	./.	0/1:73,65:32:138:0.471:2	./.	./.
chr3	128979256	rs6802965	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:22,23:30:45:0.511:2	0/1:14,14:31:28:0.500:2	./.	0/1:24,26:31:50:0.520:2	./.	./.	./.	./.	0/1:28,20:30:48:0.417:2	./.	./.
chr3	129017262	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:34:155:0.026:2	./.	./.
chr3	129034758	rs6795995	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:5,4:30:9:0.444:2	./.	0/1:14,3:30:17:0.176:2	./.	0/1:6,7:28:13:0.538:2	./.	./.	0/1:5,6:32:12:0.545:2	./.	./.
chr3	129035021	rs13438	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:12,7:33:19:0.368:2	./.	./.	0/1:12,6:29:18:0.333:2	./.	0/1:5,4:30:9:0.444:2	./.	./.	./.	./.	./.
chr3	129121357	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:34:127:0.031:2	./.	./.
chr3	129130018	rs73202271	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:31,30:30:61:0.492:2	0/1:22,20:31:42:0.476:2	./.	./.	./.	./.	0/1:36,49:29:85:0.576:2	./.	0/1:30,35:29:65:0.538:2	./.	./.
chr3	129140489	rs3774788	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:24,15:27:39:0.385:2	0/1:9,10:28:19:0.526:2	./.	./.	./.	./.	0/1:21,21:28:42:0.500:2	./.	0/1:33,21:29:54:0.389:2	./.	./.
chr3	129147326	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,5:29:192:0.026:2	./.	./.
chr3	129152089	rs140696	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:22,22:31:45:0.500:2	0/1:14,13:30:27:0.481:2	./.	./.	./.	./.	0/1:24,20:30:44:0.455:2	./.	0/1:16,25:31:41:0.610:2	./.	./.
chr3	129155670	rs10342	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:65,43:31:109:0.398:2	0/1:39,26:31:65:0.400:2	./.	./.	./.	./.	0/1:57,31:31:88:0.352:2	./.	0/1:74,75:32:149:0.503:2	./.	./.
chr3	129159153	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,14:15:117:0.120:2	./.	./.	./.	./.
chr3	129180119	rs138793724	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,77:33:195:0.395:2	./.	./.	./.
chr3	129180146	rs144031572	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,74:30:176:0.420:2	./.	./.	./.
chr3	129200392	rs201192197	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:166,31:32:198:0.157:2	0/1:132,25:31:157:0.159:2	./.	./.	./.	./.	0/1:146,53:31:199:0.266:2	0/1:162,38:31:200:0.190:2	./.	0/1:166,31:32:197:0.157:2	./.
chr3	129202427	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:32:156:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	129210977	rs2285354	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:35,32:32:67:0.478:2	0/1:24,15:32:39:0.385:2	./.	./.	0/1:36,19:32:55:0.345:2	./.	0/1:35,27:31:62:0.435:2	0/1:40,48:32:88:0.545:2	0/1:53,46:32:99:0.465:2	./.	0/1:77,37:32:114:0.325:2
chr3	129214302	rs111401191	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:21,23:33:44:0.523:2	0/1:13,13:32:26:0.500:2	./.	./.	./.	./.	0/1:16,13:32:29:0.448:2	./.	0/1:26,18:33:44:0.409:2	./.	./.
chr3	129233373	rs76881473	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,44:31:93:0.473:2	./.	./.	./.	./.	./.
chr3	129247721	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:35:172:0.023:2	./.	./.	./.	./.
chr3	129247820	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:181,5:32:186:0.027:2	./.	./.	./.	./.	./.	./.
chr3	129249859	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,51:28:85:0.600:2	./.	./.	./.	./.	./.
chr3	129266404	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,43:31:75:0.573:2	./.	./.	./.	./.	./.	./.	./.
chr3	129267910	rs61737314	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,37:30:81:0.457:2
chr3	129268109	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,5:25:88:0.057:2	0/1:102,8:19:110:0.073:2	./.	0/1:62,10:19:72:0.139:2	0/1:120,16:16:136:0.118:2	0/1:111,9:25:120:0.075:2	./.	./.
chr3	129269961	rs3736170	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,97:31:182:0.533:2	./.	./.
chr3	129275206	rs11920311	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:1,102:32:103:0.990:2	0/1:1,75:32:76:0.987:2	./.	./.	./.	./.	0/1:95,83:32:178:0.466:2	./.	0/1:90,102:33:192:0.531:2	./.	./.
chr3	129279570	rs2170774	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:2,80:30:82:0.976:2	0/1:0,32:29:32:1.00:2	./.	./.	./.	./.	0/1:27,30:26:57:0.526:2	./.	0/1:43,19:29:63:0.306:2	./.	./.
chr3	129279597	rs2713627	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,60:31:61:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,75:32:76:1.00:2
chr3	129281980	rs2713625	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:31:60:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,77:30:77:1.00:2	0/1:1,102:30:103:0.990:2	0/1:0,112:30:112:1.00:2	0/1:0,119:30:119:1.00:2	0/1:0,111:30:111:1.00:2	0/1:0,114:32:114:1.00:2	0/1:0,70:31:70:1.00:2	0/1:0,78:31:78:1.00:2
chr3	129284785	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:32:155:0.026:2	./.	./.	./.	./.	./.
chr3	129284818	rs2625973	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,108:29:108:1.00:2	0/1:0,90:29:90:1.00:2	./.	./.	./.	./.	0/1:1,175:30:176:0.994:2	./.	0/1:84,95:29:179:0.531:2	0/1:64,89:29:153:0.582:2	./.
chr3	129286413	rs2245285	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,55:33:55:1.00:2	0/1:0,33:33:33:1.00:2	./.	0/1:40,30:32:70:0.429:2	0/1:55,51:31:106:0.481:2	./.	0/1:0,101:32:101:1.00:2	./.	0/1:0,54:33:54:1.00:2	0/1:40,29:33:70:0.420:2	./.
chr3	129286635	rs2245278	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,53:32:53:1.00:2	0/1:1,21:32:22:0.955:2	./.	./.	./.	./.	0/1:1,72:31:73:0.986:2	./.	0/1:23,17:31:40:0.425:2	0/1:29,17:32:46:0.370:2	./.
chr3	129289752	rs2285365	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,89:31:180:0.494:2	0/1:93,79:31:173:0.459:2	./.	./.	./.	0/1:94,79:33:173:0.457:2	./.	./.
chr3	129289978	rs144843366	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:86,57:32:143:0.399:2	0/1:35,31:32:66:0.470:2	./.	./.	./.	./.	0/1:67,53:32:120:0.442:2	./.	./.	./.	./.
chr3	129290415	rs373410463	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:133,19:15:152:0.125:2	0/1:130,16:15:146:0.110:2	0/1:110,21:15:133:0.160:2	0/1:121,16:14:137:0.117:2	./.	0/1:89,8:25:97:0.082:2	./.
chr3	129291499	rs2285368	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,84:32:171:0.491:2	0/1:70,78:32:148:0.527:2	./.	./.	./.	0/1:55,90:33:145:0.621:2	./.	./.
chr3	129291751	rs2244708	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,39:28:39:1.00:2	0/1:0,20:29:20:1.00:2	./.	0/1:37,36:29:73:0.493:2	0/1:59,19:31:78:0.244:2	./.	0/1:0,66:30:66:1.00:2	./.	0/1:0,42:30:42:1.00:2	0/1:23,17:29:40:0.425:2	./.
chr3	129293183	rs2625962	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:23:6:1.00:2	0/1:0,4:26:4:1.00:2	./.	./.	0/1:0,4:29:4:1.00:2	0/1:0,3:30:3:1.00:2	./.	0/1:0,3:30:3:1.00:2	0/1:0,3:30:3:1.00:2	./.	./.
chr3	129293256	rs2255703	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,33:30:33:1.00:2	0/1:0,17:31:17:1.00:2	./.	0/1:30,28:30:58:0.483:2	0/1:39,23:30:62:0.371:2	./.	0/1:1,34:31:35:0.971:2	./.	0/1:0,40:30:40:1.00:2	0/1:19,30:31:49:0.612:2	0/1:18,13:31:31:0.419:2
chr3	129293316	rs199793511	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,32:30:72:0.444:2	./.	./.
chr3	129297223	rs1110168	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,48:30:48:1.00:2	0/1:0,37:30:37:1.00:2	./.	./.	./.	./.	0/1:2,87:29:89:0.978:2	./.	0/1:30,26:32:56:0.464:2	0/1:21,30:30:51:0.588:2	./.
chr3	129302455	rs2285370	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,49:32:84:0.583:2	0/1:56,49:32:105:0.467:2	./.	./.	./.	0/1:38,27:33:65:0.415:2	./.	./.
chr3	129303072	rs2285371	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,51:31:97:0.526:2	0/1:69,48:30:117:0.410:2	./.	./.	./.	0/1:39,52:32:91:0.571:2	./.	./.
chr3	129304797	rs2285372	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,60:32:146:0.411:2	0/1:89,107:31:196:0.546:2	./.	./.	./.	0/1:66,51:32:117:0.436:2	./.	./.
chr3	129305460	rs2301572	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,48:33:129:0.372:2	0/1:94,64:32:158:0.405:2	./.	./.	./.	0/1:43,53:33:96:0.552:2	./.	./.
chr3	129308292	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,4:32:33:0.121:2	./.	./.	./.	./.	./.	./.	./.
chr3	129324193	rs7619850	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	0/1:0,2:31:2:1.00:2	./.	./.
chr3	129324608	rs79870266	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,20:32:32:0.625:2	0/1:6,13:33:19:0.684:2	./.	./.	./.	./.	./.	./.	0/1:19,10:32:29:0.345:2	./.	./.
chr3	129389976	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:33:76:0.053:2	./.
chr3	129546664	rs72987361	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,26:32:47:0.553:2	./.
chr3	129546729	rs784689	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:31:80:1.00:2	0/1:0,61:30:61:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,104:30:104:1.00:2	0/1:2,134:30:136:0.985:2	0/1:0,110:31:110:1.00:2	0/1:0,145:30:145:1.00:2	0/1:1,125:30:126:0.992:2	0/1:0,100:31:100:1.00:2	0/1:2,90:31:92:0.978:2	0/1:1,101:31:102:0.990:2
chr3	129694681	rs5658	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,40:31:93:0.430:2	0/1:45,23:32:68:0.338:2	0/1:35,36:31:71:0.507:2	./.
chr3	129695714	rs5660	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,35:28:70:0.500:2	0/1:26,18:29:44:0.409:2	./.	./.	./.	0/1:71,44:29:115:0.383:2	0/1:67,59:29:127:0.468:2	./.	./.	./.	./.
chr3	129695954	rs5662	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,22:33:22:1.00:2	0/1:0,5:32:5:1.00:2	./.	0/1:0,19:32:19:1.00:2	0/1:0,7:28:7:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,7:30:7:1.00:2	0/1:2,14:32:16:0.875:2	0/1:0,16:32:16:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,10:32:10:1.00:2
chr3	129696041	rs5663	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,25:32:25:1.00:2	0/1:0,5:31:5:1.00:2	./.	0/1:0,26:32:26:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,37:33:37:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,19:33:19:1.00:2
chr3	129800823	rs78610497	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:67,19:32:86:0.221:2	0/1:42,15:32:58:0.263:2	0/1:0,9:30:9:1.00:2	0/1:4,76:32:80:0.950:2	0/1:59,59:32:118:0.500:2	0/1:116,34:32:150:0.227:2	0/1:81,27:32:108:0.250:2	0/1:93,68:33:161:0.422:2	0/1:0,93:33:93:1.00:2	0/1:57,51:32:108:0.472:2	0/1:71,50:31:121:0.413:2
chr3	129800888	rs76920544	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,12:30:63:0.190:2	0/1:41,8:33:49:0.163:2	0/1:0,3:32:3:1.00:2	0/1:1,26:32:27:0.963:2	0/1:38,14:32:52:0.269:2	0/1:119,18:31:137:0.131:2	0/1:72,5:32:77:0.065:2	0/1:74,32:32:106:0.302:2	0/1:0,26:33:26:1.00:2	0/1:59,25:32:84:0.298:2	0/1:90,17:32:107:0.159:2
chr3	129800895	rs79888841	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,11:29:57:0.193:2	0/1:37,5:32:42:0.119:2	0/1:0,2:30:2:1.00:2	0/1:0,24:31:24:1.00:2	0/1:34,10:30:44:0.227:2	0/1:111,16:30:127:0.126:2	0/1:63,6:31:69:0.087:2	0/1:69,24:30:93:0.258:2	0/1:0,18:31:18:1.00:2	0/1:56,19:29:75:0.253:2	0/1:85,14:29:99:0.141:2
chr3	129811934	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:32:147:0.027:2	./.	./.	./.
chr3	129811966	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,6:31:194:0.031:2	./.	./.	./.
chr3	129811972	.	G	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,6:28:191:0.031:2	0/1:157,4:32:161:0.025:2	0/1:182,10:31:193:0.052:2	./.	0/1:182,10:30:192:0.052:2	./.	0/1:182,7:32:189:0.037:2	./.
chr3	130098296	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:34:122:0.033:2	./.	./.
chr3	130098349	rs16845861	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,47:32:95:0.495:2	0/1:51,27:32:78:0.346:2	./.	./.	./.	0/1:56,54:33:110:0.491:2	./.	0/1:41,52:32:93:0.559:2
chr3	130103709	rs1453241	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,37:31:78:0.474:2	0/1:23,16:30:39:0.410:2	./.	./.	./.	0/1:39,32:33:71:0.451:2	./.	0/1:32,30:31:62:0.484:2
chr3	130104062	rs10212241	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,15:30:36:0.417:2	0/1:19,22:28:41:0.537:2	./.	./.	./.	0/1:22,24:30:46:0.522:2	./.	0/1:22,20:30:42:0.476:2
chr3	130104206	rs10212372	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,27:33:50:0.540:2	0/1:10,27:33:37:0.730:2	./.	./.	./.	0/1:38,20:33:58:0.345:2	./.	0/1:34,30:33:64:0.469:2
chr3	130110302	rs148235459	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,80:32:179:0.447:2	./.	./.	./.	./.	./.	./.	./.
chr3	130110550	rs11917356	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,24:31:54:0.444:2	./.	0/1:28,20:31:48:0.417:2	./.	./.	./.	0/1:49,32:32:81:0.395:2
chr3	130116684	rs79867908	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,57:31:99:0.576:2	./.	./.	./.	./.	./.	0/1:67,53:32:120:0.442:2
chr3	130116696	rs12488457	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,34:31:90:0.378:2	0/1:39,31:31:71:0.443:2	0/1:0,7:32:7:1.00:2	0/1:56,63:32:119:0.529:2	0/1:61,35:31:96:0.365:2	0/1:84,43:32:127:0.339:2	0/1:71,54:32:125:0.432:2	0/1:0,127:32:127:1.00:2	0/1:0,84:32:84:1.00:2	0/1:1,98:31:99:0.990:2	0/1:62,55:31:117:0.470:2
chr3	130116707	rs74695611	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,56:31:118:0.475:2	./.	./.	./.	./.	./.	./.	./.
chr3	130124491	rs10934940	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:79,39:31:118:0.331:2	0/1:31,26:32:58:0.456:2	0/1:0,14:30:14:1.00:2	0/1:2,116:31:118:0.983:2	0/1:56,32:30:88:0.364:2	0/1:79,66:31:145:0.455:2	0/1:51,52:31:103:0.505:2	0/1:1,122:31:123:0.992:2	0/1:0,106:32:106:1.00:2	0/1:0,83:32:83:1.00:2	0/1:79,56:31:135:0.415:2
chr3	130124989	rs4688761	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,59:32:119:0.496:2	0/1:38,37:32:75:0.493:2	0/1:0,12:32:12:1.00:2	0/1:65,81:32:146:0.555:2	0/1:67,70:31:137:0.511:2	0/1:100,73:31:173:0.422:2	0/1:71,77:31:148:0.520:2	0/1:4,134:31:138:0.971:2	0/1:0,163:32:163:1.00:2	0/1:2,124:32:126:0.984:2	0/1:78,72:32:150:0.480:2
chr3	130125116	rs1497312	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,20:31:41:0.488:2	0/1:23,9:33:32:0.281:2	0/1:0,3:34:3:1.00:2	0/1:0,30:32:30:1.00:2	0/1:15,13:32:28:0.464:2	0/1:23,13:32:36:0.361:2	0/1:27,8:29:35:0.229:2	0/1:1,21:32:22:0.955:2	0/1:0,34:33:34:1.00:2	0/1:4,36:32:40:0.900:2	0/1:32,37:34:69:0.536:2
chr3	130128232	rs77968090	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,40:33:82:0.488:2	./.	./.	./.	./.	./.	./.	./.
chr3	130129322	rs35886424	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,33:32:75:0.446:2	./.	./.	0/1:24,26:33:50:0.520:2	./.	./.	./.	./.
chr3	130134492	rs16827497	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:111,71:32:182:0.390:2	0/1:67,43:32:110:0.391:2	0/1:0,17:32:17:1.00:2	0/1:3,148:32:151:0.980:2	0/1:90,63:32:153:0.412:2	0/1:117,68:32:185:0.368:2	0/1:63,64:32:127:0.504:2	0/1:1,152:33:153:0.993:2	0/1:1,169:34:170:0.994:2	0/1:1,156:33:157:0.994:2	0/1:108,66:33:174:0.379:2
chr3	130134563	rs7628563	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,51:33:124:0.411:2	0/1:43,39:32:82:0.476:2	0/1:0,13:32:13:1.00:2	0/1:2,115:32:117:0.983:2	0/1:66,43:32:109:0.394:2	0/1:90,64:32:154:0.416:2	0/1:3,104:32:107:0.972:2	0/1:2,131:32:133:0.985:2	0/1:1,149:33:150:0.993:2	0/1:0,94:33:94:1.00:2	0/1:98,70:33:168:0.417:2
chr3	130150310	rs61744488	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,31:31:49:0.633:2	./.	./.	./.	./.	./.	./.	./.
chr3	130158438	rs182112053	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,31:33:48:0.646:2	./.
chr3	130162395	rs9883988	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:31:71:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,21:31:21:1.00:2	0/1:1,71:31:72:0.986:2	0/1:17,25:29:42:0.595:2	0/1:0,63:30:63:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,68:31:68:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,74:32:74:1.00:2	0/1:53,48:31:101:0.475:2
chr3	130174334	rs819085	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,36:32:36:1.00:2	0/1:0,28:31:28:1.00:2	./.	0/1:0,33:31:33:1.00:2	0/1:24,9:30:33:0.273:2	0/1:0,31:30:31:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,36:31:37:1.00:2	0/1:43,32:31:75:0.427:2
chr3	130187817	rs322113	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:30:66:1.00:2	0/1:0,44:29:44:1.00:2	0/1:0,12:29:12:1.00:2	0/1:0,93:29:93:1.00:2	0/1:0,81:30:81:1.00:2	0/1:0,107:30:107:1.00:2	0/1:0,77:30:77:1.00:2	0/1:1,91:30:92:0.989:2	0/1:0,77:31:77:1.00:2	0/1:3,69:30:72:0.958:2	0/1:0,126:30:126:1.00:2
chr3	130187885	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,43:33:114:0.377:2	./.	./.	./.	./.	./.	./.	./.
chr3	130202865	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,3:32:35:0.086:2	./.	./.	./.	./.	./.
chr3	130282383	rs114511272	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,61:31:118:0.521:2	./.	./.	./.	./.	./.
chr3	130284284	rs9830253	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:31:59:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,6:28:6:1.00:2	0/1:37,29:31:66:0.439:2	0/1:4,85:31:89:0.955:2	0/1:40,27:31:67:0.403:2	0/1:1,70:31:71:0.986:2	0/1:0,64:31:64:1.00:2	0/1:0,61:32:62:1.00:2	0/1:37,22:30:59:0.373:2	0/1:0,50:31:50:1.00:2
chr3	130286042	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:31:167:0.024:2	./.	./.	./.	./.	./.
chr3	130290007	rs61730505	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,10:32:26:0.385:2	./.	./.	./.
chr3	130290055	rs377667400	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,18:32:39:0.462:2	./.	./.	./.	./.
chr3	130290182	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,47:32:107:0.439:2	./.	./.	./.	./.	./.
chr3	130300650	rs6439249	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:32:75:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,18:33:18:1.00:2	0/1:56,44:33:100:0.440:2	0/1:1,76:32:77:0.987:2	0/1:42,52:32:94:0.553:2	0/1:2,51:32:53:0.962:2	0/1:0,66:33:66:1.00:2	0/1:0,90:33:90:1.00:2	0/1:1,73:32:74:0.986:2	0/1:0,105:33:105:1.00:2
chr3	130305350	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:35:176:0.023:2	./.	./.
chr3	130311398	rs73868925	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,66:31:133:0.496:2	./.	./.	./.	./.	./.	./.	./.
chr3	130311422	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:33:105:0.038:2	./.
chr3	130317283	rs80272327	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,25:30:56:0.446:2	./.	./.	./.	./.	./.
chr3	130360527	rs61629992	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,51:32:116:0.440:2	./.	./.
chr3	130361856	rs16830494	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,10:32:18:0.556:2	./.	./.	./.	./.	./.	0/1:82,76:32:158:0.481:2	./.	./.
chr3	130368069	rs7614116	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,55:29:110:0.509:2	0/1:34,22:30:56:0.393:2	0/1:3,7:31:10:0.700:2	0/1:56,59:30:115:0.513:2	./.	0/1:73,36:31:109:0.330:2	./.	0/1:74,67:30:141:0.475:2	0/1:0,97:31:97:1.00:2	0/1:42,43:31:85:0.506:2	./.
chr3	130368170	rs199922994	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,30:33:79:0.380:2	./.	./.	./.	./.
chr3	130368173	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:33:85:0.048:2	./.	./.
chr3	130368234	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr3	130368301	rs7636656	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,20:33:49:0.408:2	./.	./.
chr3	130394235	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,3:34:44:0.068:2	./.	./.	./.	./.	./.	./.
chr3	130442259	rs55657005	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,13:27:32:0.406:2	0/1:18,14:28:32:0.438:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	130449222	rs2170990	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,17:33:37:0.459:2	./.	0/1:22,21:33:43:0.488:2	0/1:21,43:34:64:0.672:2	0/1:20,32:33:52:0.615:2	./.
chr3	130613634	rs112703671	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,25:32:65:0.385:2	0/1:39,35:33:74:0.473:2	./.	./.	./.	0/1:44,61:32:105:0.581:2
chr3	130613641	rs371998630	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:33:69:0.058:2	./.	./.	./.
chr3	130718472	rs16835513	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:36,29:32:65:0.446:2	0/1:33,16:33:49:0.327:2	0/1:8,3:32:11:0.273:2	./.	./.	0/1:43,9:32:52:0.173:2	./.	0/1:0,75:32:75:1.00:2	./.	./.	./.
chr3	130743812	rs35558913	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,53:31:54:0.981:2	0/1:28,30:31:58:0.517:2	0/1:32,30:31:62:0.484:2	./.	./.	./.	0/1:42,29:33:71:0.408:2
chr3	130947435	rs3738000	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:3,30:30:33:0.909:2	0/1:0,13:30:13:1.00:2	./.	0/1:0,31:31:31:1.00:2	./.	0/1:16,27:30:43:0.628:2	0/1:23,7:30:30:0.233:2	0/1:23,9:30:33:0.281:2	0/1:0,39:31:39:1.00:2	0/1:13,7:32:20:0.350:2	0/1:18,24:30:42:0.571:2
chr3	130992385	rs16836266	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,78:30:174:0.448:2	./.	./.	./.
chr3	131068497	rs12637848	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,44:32:99:0.444:2	./.	./.	./.
chr3	131068509	rs12632399	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,47:33:109:0.431:2	./.	./.	./.
chr3	131100956	rs150437674	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,26:29:56:0.464:2	./.	./.	./.
chr3	131186936	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:34:184:0.022:2	0/1:181,6:35:187:0.032:2	./.	./.
chr3	131188528	rs2291382	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,35:33:84:0.417:2	0/1:29,23:32:52:0.442:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	131268824	rs11915192	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,49:30:118:0.415:2	./.	./.	./.	./.	./.	./.
chr3	131624120	rs3749263	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,46:32:92:0.500:2	./.	./.
chr3	132068831	rs2228402	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,85:31:86:0.988:2	0/1:0,39:31:39:1.00:2	./.	0/1:0,76:30:76:1.00:2	./.	0/1:0,85:30:85:1.00:2	0/1:46,25:29:71:0.352:2	0/1:1,88:30:89:0.989:2	0/1:83,28:32:111:0.252:2	0/1:49,38:31:87:0.437:2	0/1:67,64:31:131:0.489:2
chr3	132071630	rs369601255	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:31:165:0.024:2	./.	./.	./.
chr3	132075554	rs3181784	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,25:31:65:0.385:2	0/1:15,13:30:28:0.464:2	0/1:4,6:31:10:0.600:2	0/1:51,28:30:79:0.354:2	./.	0/1:39,46:31:85:0.541:2	0/1:58,51:30:109:0.468:2	0/1:0,94:31:94:1.00:2	0/1:55,41:32:96:0.427:2	0/1:28,32:32:60:0.533:2	./.
chr3	132075707	rs2071505	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:33:56:1.00:2	0/1:0,35:32:35:1.00:2	0/1:9,7:32:16:0.438:2	0/1:4,67:32:71:0.944:2	./.	0/1:6,72:32:79:0.923:2	0/1:75,44:32:119:0.370:2	0/1:0,133:32:134:1.00:2	0/1:75,65:33:140:0.464:2	0/1:37,32:31:69:0.464:2	0/1:51,23:32:74:0.311:2
chr3	132153397	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:31:9:0.444:2	./.	./.	./.	./.	./.	./.	./.
chr3	132166266	rs11917172	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,68:30:73:0.932:2	./.	0/1:34,40:30:74:0.541:2	./.	./.	./.	0/1:54,63:30:117:0.538:2
chr3	132166302	rs116489157	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,29:32:56:0.518:2	./.	./.	./.
chr3	132172348	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,4:35:39:0.103:2	./.
chr3	132218623	rs3762672	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:32:5:0.600:2	0/1:0,68:32:68:1.00:2	0/1:0,57:31:57:1.00:2	./.	0/1:0,63:32:63:1.00:2	./.	0/1:54,35:31:89:0.393:2	0/1:16,39:31:55:0.709:2	0/1:0,66:32:66:1.00:2
chr3	132221139	rs55825559	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,26:32:46:0.565:2	./.
chr3	132226100	rs79953286	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,30:32:66:0.455:2	./.	./.	./.	./.	./.	./.
chr3	132249874	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:133,4:32:137:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr3	132257069	rs138367039	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,54:30:124:0.435:2	./.	0/1:75,66:30:141:0.468:2	./.	./.	./.	./.
chr3	132277866	rs2270801	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,108:31:110:0.982:2	./.	0/1:102,49:31:151:0.325:2	./.	./.	./.	./.
chr3	132319393	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:34:195:0.021:2
chr3	132319697	rs142351422	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,58:32:193:0.301:2
chr3	132319808	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,24:32:124:0.194:2	./.	./.	./.	./.
chr3	132320051	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:109,5:31:114:0.044:2	0/1:185,8:33:193:0.041:2	./.	./.	0/1:180,11:33:191:0.058:2	./.	./.	0/1:182,14:32:197:0.071:2	0/1:186,9:34:195:0.046:2
chr3	132320389	rs371284085	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:56,20:32:76:0.263:2	0/1:36,7:32:43:0.163:2	0/1:7,3:31:10:0.300:2	./.	0/1:27,23:31:50:0.460:2	0/1:36,19:32:55:0.345:2	./.	0/1:48,11:30:59:0.186:2	0/1:51,21:33:72:0.292:2	./.	0/1:78,26:30:104:0.250:2
chr3	132320534	.	A	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:82,5:33:87:0.057:2	0/1:71,5:31:76:0.066:2	./.	./.	0/1:87,7:32:94:0.074:2	0/1:102,5:32:107:0.047:2	./.	0/1:85,5:31:90:0.056:2	0/1:115,4:32:119:0.034:2	./.	0/1:118,5:31:123:0.041:2
chr3	132321090	rs79521265	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,6:31:28:0.214:2	./.	./.	./.	./.	./.	./.
chr3	132321242	rs62291492	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,21:30:36:0.583:2	./.	0/1:11,15:31:26:0.577:2	./.	./.	./.	./.
chr3	132338346	rs41272321	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,50:30:53:0.943:2	./.	0/1:24,21:30:45:0.467:2	./.	./.	./.	./.
chr3	132360883	rs821572	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,134:32:134:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,187:32:187:1.00:2	0/1:0,171:32:171:1.00:2	0/1:0,191:31:191:1.00:2	0/1:0,185:32:185:1.00:2	0/1:0,188:32:188:1.00:2	0/1:0,194:33:194:1.00:2	0/1:0,152:32:153:1.00:2	0/1:0,192:32:192:1.00:2
chr3	132390657	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:197:0.020:2
chr3	132401600	rs6794496	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,5:30:16:0.313:2	0/1:44,44:32:88:0.500:2	./.	./.	0/1:0,62:31:62:1.00:2	./.	./.	./.	0/1:0,107:32:107:1.00:2
chr3	132411519	rs78132240	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,11:17:158:0.070:2	./.	./.	0/1:131,9:23:140:0.064:2
chr3	133098806	rs34111099	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,43:32:84:0.512:2	./.	./.	./.	./.	./.	./.	./.
chr3	133099245	rs1197314	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,17:32:42:0.405:2	0/1:16,11:33:27:0.407:2	0/1:0,6:33:6:1.00:2	0/1:26,21:32:47:0.447:2	0/1:2,52:32:54:0.963:2	0/1:32,20:32:52:0.385:2	0/1:25,33:33:58:0.569:2	0/1:0,41:31:41:1.00:2	0/1:24,29:32:53:0.547:2	./.	0/1:27,40:32:67:0.597:2
chr3	133099471	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:113,5:28:119:0.042:2	./.	./.	./.	./.	./.	./.
chr3	133119303	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,4:30:94:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr3	133167363	rs2276737	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,23:32:53:0.434:2	./.	0/1:25,13:32:38:0.342:2	0/1:23,19:32:42:0.452:2	0/1:2,58:32:60:0.967:2	0/1:27,35:33:62:0.565:2	0/1:21,13:32:34:0.382:2	0/1:31,31:32:62:0.500:2
chr3	133305446	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:32:116:0.034:2	./.	./.	./.	./.	./.
chr3	133327457	rs1051772	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,26:29:65:0.400:2	0/1:29,22:28:51:0.431:2	./.	./.	./.	./.	./.	./.
chr3	133329943	rs1444601	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,127:32:127:1.00:2	0/1:0,97:32:97:1.00:2	0/1:11,5:31:16:0.313:2	0/1:0,101:31:101:1.00:2	0/1:1,136:31:137:0.993:2	0/1:1,112:31:113:0.991:2	0/1:2,125:32:127:0.984:2	0/1:2,135:31:137:0.985:2	0/1:76,49:32:125:0.392:2	0/1:0,109:32:109:1.00:2	./.
chr3	133339179	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:32:91:0.044:2	./.	./.	./.	./.	./.
chr3	133341988	rs10935070	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:32:49:1.00:2	0/1:0,27:31:27:1.00:2	0/1:3,5:31:8:0.625:2	0/1:46,60:32:106:0.566:2	0/1:22,21:32:43:0.488:2	./.	0/1:2,41:32:43:0.953:2	0/1:50,30:32:80:0.375:2	./.	0/1:35,33:32:68:0.485:2	./.
chr3	133342218	rs4854738	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,44:31:100:0.440:2
chr3	133356790	rs17301766	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,27:31:74:0.365:2	0/1:35,29:32:64:0.453:2	0/1:35,31:32:66:0.470:2	./.
chr3	133356991	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:31:155:0.026:2	./.	./.	./.
chr3	133358897	rs199725610	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,11:14:97:0.113:2	./.	./.	./.	./.	./.	./.	./.
chr3	133362154	rs17301889	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,62:32:147:0.422:2	0/1:82,71:33:153:0.464:2	0/1:79,62:33:141:0.440:2	./.
chr3	133368362	rs3192149	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,93:33:94:1.00:2	0/1:0,61:33:61:1.00:2	0/1:4,5:32:9:0.556:2	0/1:1,104:33:105:0.990:2	0/1:0,61:32:61:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,92:33:92:1.00:2	0/1:0,77:33:77:1.00:2	0/1:67,52:33:119:0.437:2	0/1:0,86:33:86:1.00:2	./.
chr3	133371471	rs55633281	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,14:31:42:0.333:2	0/1:25,19:30:44:0.432:2	./.	./.	./.	./.	./.	./.
chr3	133375669	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,4:33:77:0.052:2	./.	./.	./.	./.	./.	./.	./.
chr3	133465283	rs1130459	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,4:30:4:1.00:2	0/1:0,5:32:5:1.00:2	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	0/1:1,2:33:3:0.667:2	0/1:5,3:31:8:0.375:2	./.
chr3	133474328	rs12769	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,58:32:58:1.00:2	0/1:0,21:32:21:1.00:2	./.	./.	./.	./.	0/1:0,46:31:46:1.00:2	0/1:32,38:31:70:0.543:2	./.	./.	./.
chr3	133475722	rs1799852	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,24:32:68:0.353:2	0/1:0,77:32:77:1.00:2
chr3	133475812	rs1799899	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,31:32:79:0.392:2	0/1:0,82:32:82:1.00:2
chr3	133476769	rs150854910	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,25:32:53:0.472:2	./.	./.
chr3	133483696	rs1880669	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:33:76:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,13:33:13:1.00:2	0/1:23,35:33:58:0.603:2	0/1:0,39:32:39:1.00:2	./.	0/1:1,52:33:53:0.981:2	0/1:0,70:33:70:1.00:2	./.	./.	./.
chr3	133485133	rs2692696	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,170:33:170:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,161:33:161:1.00:2	0/1:0,99:31:99:1.00:2	0/1:1,149:32:150:0.993:2	0/1:0,125:33:125:1.00:2	0/1:0,165:32:165:1.00:2	0/1:1,166:33:167:0.994:2	0/1:0,142:33:142:1.00:2	0/1:0,181:33:181:1.00:2
chr3	133486958	rs8649	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:33:9:0.444:2	0/1:30,27:33:57:0.474:2	0/1:30,19:32:49:0.388:2	./.	0/1:14,25:33:39:0.641:2	0/1:27,25:32:52:0.481:2	./.	0/1:53,4:33:58:0.070:2	./.
chr3	133494354	rs1049296	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,56:31:93:0.602:2	./.	0/1:56,43:30:99:0.434:2	./.	./.	0/1:56,47:32:104:0.456:2	./.	./.
chr3	133524717	rs1107413	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,42:32:87:0.483:2	./.	0/1:37,18:33:55:0.327:2	./.	./.	0/1:23,10:33:33:0.303:2	./.	0/1:16,15:33:31:0.484:2
chr3	133547692	rs2293373	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:8,10:29:18:0.556:2	0/1:1,3:32:4:0.750:2	./.	./.	0/1:17,7:31:24:0.292:2	./.	0/1:9,7:31:16:0.438:2	0/1:17,13:30:30:0.433:2	./.	./.	./.
chr3	133648105	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,11:33:16:0.688:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	133648554	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,37:31:72:0.514:2	./.	./.	./.	./.	./.	./.	./.
chr3	133666209	rs34550074	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,24:31:65:0.369:2	./.	0/1:35,35:31:70:0.500:2	./.	0/1:50,46:32:96:0.479:2	0/1:38,39:31:77:0.506:2	./.
chr3	133670073	rs6767412	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	0/1:25,16:33:41:0.390:2	./.	0/1:8,30:30:38:0.789:2	./.	0/1:27,12:33:39:0.308:2	0/1:28,14:33:42:0.333:2	./.
chr3	133698349	rs10935090	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,9:33:11:0.818:2	0/1:28,48:33:76:0.632:2	0/1:29,23:32:52:0.442:2	./.	./.	./.	./.	./.	./.
chr3	133928672	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,4:30:113:0.035:2	./.	0/1:100,4:31:104:0.038:2	./.	./.	./.	./.	./.
chr3	133930379	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:29:45:0.089:2	./.	./.	./.	./.	./.
chr3	133941320	rs1131262	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,26:31:56:0.464:2	./.	./.	./.	./.	./.
chr3	134077470	rs1353776	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,21:28:41:0.512:2	0/1:9,12:27:21:0.571:2	./.	0/1:38,39:27:77:0.506:2	0/1:0,69:27:69:1.00:2	./.	0/1:24,45:27:69:0.652:2	0/1:26,32:28:58:0.552:2	0/1:32,32:29:64:0.500:2	0/1:0,53:27:53:1.00:2	./.
chr3	134084660	rs139202377	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,29:33:58:0.500:2	./.	./.	./.	./.
chr3	134085136	rs375446213	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,60:33:118:0.508:2
chr3	134225969	rs9827878	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,8:29:17:0.471:2	0/1:32,23:30:55:0.418:2	./.	./.	0/1:22,26:30:48:0.542:2	./.	./.	./.	./.
chr3	134256110	rs114108011	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,23:28:51:0.451:2	./.	./.	./.	./.
chr3	134278270	rs1127826	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:21,16:32:37:0.432:2	0/1:7,9:32:16:0.563:2	0/1:2,5:33:7:0.714:2	./.	./.	0/1:0,29:31:29:1.00:2	0/1:15,7:32:22:0.318:2	0/1:1,35:32:36:0.972:2	0/1:15,8:30:23:0.348:2	0/1:12,19:33:31:0.613:2	./.
chr3	134322742	rs2293293	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,14:29:47:0.298:2	0/1:7,17:29:24:0.708:2	0/1:1,4:30:5:0.800:2	0/1:30,27:30:57:0.474:2	0/1:24,25:29:49:0.510:2	0/1:0,43:29:43:1.00:2	0/1:2,35:30:37:0.946:2	0/1:0,49:29:49:1.00:2	0/1:27,26:30:53:0.491:2	0/1:23,19:30:42:0.452:2	./.
chr3	134322814	rs2293294	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,34:32:55:0.642:2	0/1:23,15:32:38:0.395:2	./.	0/1:45,35:33:80:0.438:2	0/1:44,25:31:69:0.362:2	./.	./.	./.	0/1:20,41:32:61:0.672:2	0/1:29,29:32:58:0.500:2	0/1:0,67:31:67:1.00:2
chr3	134323012	rs376145121	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,14:29:26:0.538:2	0/1:4,11:31:15:0.733:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	134323156	rs4955535	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,128:29:128:1.00:2	0/1:0,71:28:71:1.00:2	0/1:0,19:29:19:1.00:2	./.	0/1:0,188:28:188:1.00:2	0/1:0,192:28:192:1.00:2	0/1:0,190:28:190:1.00:2	0/1:0,188:28:188:1.00:2	0/1:0,193:29:193:1.00:2	0/1:0,182:29:182:1.00:2	0/1:0,126:29:126:1.00:2
chr3	134329069	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:33:138:0.029:2	./.
chr3	134369716	rs13060869	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:45,30:31:75:0.400:2	0/1:29,36:32:65:0.554:2	./.	0/1:77,60:31:137:0.438:2	./.	0/1:87,74:30:161:0.460:2	./.	./.	0/1:53,51:32:104:0.490:2	0/1:49,31:31:80:0.388:2	0/1:43,46:30:89:0.517:2
chr3	134670524	rs7644369	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,6:32:17:0.353:2	0/1:70,51:31:123:0.421:2	0/1:54,31:29:85:0.365:2	0/1:52,61:30:113:0.540:2	./.	./.	0/1:63,73:32:136:0.537:2	0/1:53,55:31:108:0.509:2	./.
chr3	134898742	rs1042787	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,3:31:18:0.167:2	./.	./.	./.	0/1:73,63:32:136:0.463:2	./.	./.	0/1:76,64:32:140:0.457:2	./.
chr3	134911580	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.	./.
chr3	134967263	rs56317545	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:32:12:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	135720540	rs9814557	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,15:31:21:0.714:2	./.	0/1:98,71:32:169:0.420:2	./.	./.	./.	0/1:114,62:32:176:0.352:2	./.	0/1:99,81:31:180:0.450:2
chr3	135720673	rs9872542	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:33:8:0.750:2	./.	0/1:23,17:32:40:0.425:2	./.	./.	./.	0/1:25,18:32:43:0.419:2	./.	0/1:36,26:33:62:0.419:2
chr3	135720851	rs6779903	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,27:31:61:0.443:2	./.	./.	0/1:32,16:32:48:0.333:2	./.
chr3	135722264	rs17197552	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,4:31:12:0.333:2	./.	0/1:62,33:32:95:0.347:2	./.	./.	./.	0/1:49,61:34:110:0.555:2	./.	0/1:45,62:33:108:0.579:2
chr3	135745762	rs9826032	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,34:32:68:0.500:2	./.	./.	./.
chr3	135797206	rs147006675	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,58:32:127:0.457:2	./.	./.	./.
chr3	135870034	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,4:31:84:0.048:2	./.	./.	./.	./.	./.	./.
chr3	136035879	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:33:182:0.022:2	./.	./.
chr3	136047691	rs142403318	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:30:10:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	136082222	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:34:173:0.023:2
chr3	136088038	rs9860801	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,61:31:62:0.984:2	0/1:0,37:31:37:1.00:2	0/1:11,8:30:19:0.421:2	./.	0/1:1,62:30:63:0.984:2	./.	./.	./.	./.	./.	0/1:61,48:31:109:0.440:2
chr3	136170901	rs34807246	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,23:32:54:0.426:2	./.	./.	./.	./.
chr3	136219085	rs114980494	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,26:32:62:0.419:2	./.
chr3	136349677	rs187418127	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,11:32:31:0.355:2	0/1:10,7:31:17:0.412:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	136573440	rs9827648	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,15:33:32:0.469:2	0/1:7,7:32:14:0.500:2	0/1:1,4:32:5:0.800:2	0/1:1,33:31:34:0.971:2	0/1:0,35:31:35:1.00:2	0/1:20,11:33:31:0.355:2	0/1:11,16:31:27:0.593:2	./.	0/1:0,29:33:29:1.00:2	0/1:9,8:32:17:0.471:2	0/1:0,48:33:48:1.00:2
chr3	136574239	rs114566691	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,33:32:66:0.500:2	./.	./.	./.	./.	./.	./.
chr3	136574501	rs1052618	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:53,41:34:94:0.436:2	0/1:24,34:32:58:0.586:2	./.	0/1:0,61:32:61:1.00:2	0/1:0,33:32:33:1.00:2	0/1:52,43:32:95:0.453:2	0/1:25,14:33:39:0.359:2	./.	0/1:0,64:33:64:1.00:2	0/1:53,17:32:70:0.243:2	0/1:0,87:33:87:1.00:2
chr3	136574521	rs1052620	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:31:14:0.286:2	./.	0/1:2,34:31:36:0.944:2	./.	./.	./.	./.	./.	0/1:57,39:33:96:0.406:2
chr3	136664807	rs61731511	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,28:32:71:0.394:2	./.	./.	./.	./.
chr3	136708342	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:32:143:0.028:2	./.	./.	./.	./.
chr3	136708404	rs244405	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,30:30:67:0.448:2	./.	./.	./.	./.	./.	./.	./.
chr3	137743508	rs17204075	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,78:31:170:0.459:2	./.	./.	./.	0/1:73,57:32:130:0.438:2	0/1:84,65:31:149:0.436:2
chr3	137749839	rs16847742	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,53:30:101:0.525:2	./.	./.	./.	0/1:34,31:29:65:0.477:2	0/1:55,34:31:89:0.382:2
chr3	137786442	rs442800	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:37,31:31:68:0.456:2	0/1:29,20:30:49:0.408:2	./.	0/1:46,49:30:95:0.516:2	0/1:0,58:30:58:1.00:2	0/1:1,107:30:108:0.991:2	0/1:47,44:30:91:0.484:2	0/1:62,43:30:105:0.410:2	0/1:0,79:31:79:1.00:2	0/1:0,96:30:96:1.00:2	0/1:0,67:31:67:1.00:2
chr3	137787041	rs115489792	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,25:29:58:0.431:2	./.	./.	./.	./.	./.
chr3	137787047	rs199606339	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,22:28:43:0.512:2	0/1:11,14:29:25:0.560:2	0/1:0,6:29:6:1.00:2	0/1:23,22:26:46:0.489:2	0/1:0,46:28:46:1.00:2	0/1:0,61:27:62:1.00:2	0/1:0,21:26:21:1.00:2	0/1:18,13:26:31:0.419:2	0/1:0,41:27:41:1.00:2	0/1:0,32:26:33:1.00:2	0/1:0,20:28:20:1.00:2
chr3	137787192	rs446644	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,38:29:76:0.500:2	0/1:19,26:28:45:0.578:2	0/1:0,13:30:13:1.00:2	0/1:49,43:29:93:0.467:2	0/1:2,82:28:84:0.976:2	0/1:0,94:28:94:1.00:2	0/1:2,80:28:82:0.976:2	0/1:57,47:28:104:0.452:2	0/1:0,92:30:92:1.00:2	0/1:0,62:28:62:1.00:2	0/1:0,90:29:90:1.00:2
chr3	137807259	rs2724693	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,11:32:30:0.367:2	0/1:9,12:32:21:0.571:2	./.	0/1:11,24:31:35:0.686:2	0/1:1,37:30:38:0.974:2	0/1:0,32:31:32:1.00:2	0/1:15,14:29:30:0.483:2	0/1:20,19:31:39:0.487:2	0/1:0,27:32:27:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,29:32:29:1.00:2
chr3	137843106	rs2170309	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:28,24:33:52:0.462:2	0/1:16,8:32:24:0.333:2	./.	./.	0/1:1,34:32:35:0.971:2	0/1:1,61:31:62:0.984:2	0/1:25,25:32:50:0.500:2	0/1:34,26:33:60:0.433:2	0/1:0,52:32:52:1.00:2	0/1:1,41:32:42:0.976:2	0/1:0,33:33:33:1.00:2
chr3	137843476	rs2246945	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:35,20:32:55:0.364:2	0/1:21,14:32:35:0.400:2	0/1:6,4:33:10:0.400:2	./.	0/1:0,46:31:46:1.00:2	0/1:1,64:32:65:0.985:2	0/1:46,20:31:66:0.303:2	0/1:50,38:32:88:0.432:2	0/1:1,67:32:68:0.985:2	0/1:0,49:31:49:1.00:2	0/1:1,71:31:72:0.986:2
chr3	137849727	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,4:31:109:0.037:2	./.	./.	./.	./.	./.	./.	./.
chr3	137849888	rs79791762	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,30:31:64:0.469:2	0/1:48,42:31:90:0.467:2	./.	./.	./.	./.	./.
chr3	137850003	rs2724691	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:42,28:32:70:0.400:2	0/1:30,22:33:52:0.423:2	0/1:0,4:34:4:1.00:2	./.	0/1:1,115:32:116:0.991:2	0/1:2,145:33:147:0.986:2	0/1:100,66:33:166:0.398:2	0/1:96,91:32:187:0.487:2	0/1:0,124:33:124:1.00:2	0/1:0,103:32:103:1.00:2	0/1:0,101:33:101:1.00:2
chr3	137880743	rs2622736	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:92,100:32:192:0.521:2	0/1:117,79:32:196:0.403:2	./.	0/1:110,83:32:193:0.430:2	0/1:3,184:32:187:0.984:2	0/1:2,181:31:183:0.989:2	0/1:113,84:32:197:0.426:2	0/1:99,97:32:196:0.495:2	0/1:0,178:33:178:1.00:2	0/1:0,188:32:188:1.00:2	0/1:0,180:33:180:1.00:2
chr3	137881241	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:33:183:0.022:2	./.
chr3	137881265	rs3732839	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,109:32:110:0.991:2	0/1:1,104:32:105:0.990:2	./.	0/1:98,63:32:161:0.391:2	0/1:2,151:31:153:0.987:2	0/1:0,150:31:150:1.00:2	0/1:95,65:31:160:0.406:2	0/1:96,87:32:183:0.475:2	0/1:0,161:32:161:1.00:2	0/1:0,152:32:152:1.00:2	0/1:0,176:32:176:1.00:2
chr3	138024853	rs149207406	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,27:31:88:0.307:2	./.	./.	./.	./.	./.
chr3	138033181	rs9289556	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:33:92:1.00:2	0/1:0,60:33:60:1.00:2	0/1:0,23:32:23:1.00:2	0/1:64,61:33:125:0.488:2	0/1:54,40:33:94:0.426:2	0/1:1,129:32:131:0.992:2	0/1:0,111:32:111:1.00:2	./.	0/1:2,140:33:143:0.986:2	0/1:0,98:32:98:1.00:2	0/1:0,139:33:139:1.00:2
chr3	138170961	rs811794	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:3,6:31:9:0.667:2	./.	./.	0/1:3,4:30:7:0.571:2	./.	./.	./.	./.	./.	./.	./.
chr3	138178103	rs189455154	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,34:30:61:0.557:2	./.	./.	./.	./.	./.	./.	./.
chr3	138180976	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:31:150:0.027:2	./.	./.
chr3	138187568	rs1679167	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,74:31:184:0.402:2	0/1:114,59:31:174:0.341:2	0/1:92,67:30:159:0.421:2	0/1:106,88:31:194:0.454:2	0/1:119,60:31:179:0.335:2	0/1:0,142:32:143:1.00:2	0/1:3,159:32:163:0.981:2	0/1:87,67:32:155:0.435:2
chr3	138191232	rs10935282	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,4:32:23:0.174:2	./.	0/1:8,12:32:20:0.600:2	0/1:30,7:33:37:0.189:2	0/1:0,24:33:24:1.00:2	0/1:0,24:31:24:1.00:2	0/1:14,17:30:31:0.548:2
chr3	138191246	rs61361298	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,6:28:20:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	138191448	rs35537868	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,46:30:90:0.511:2	./.	./.	./.	./.	./.	./.	./.
chr3	138218994	rs35340237	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:71,67:33:138:0.486:2	0/1:32,41:32:73:0.562:2	./.	0/1:64,73:32:137:0.533:2	./.	./.	./.	./.	./.	./.	./.
chr3	138244334	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	138244400	rs9878436	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,10:32:22:0.455:2	0/1:5,5:31:10:0.500:2	0/1:0,6:32:6:1.00:2	0/1:14,14:32:28:0.500:2	0/1:0,10:32:10:1.00:2	0/1:13,10:31:23:0.435:2	0/1:8,5:31:13:0.385:2	0/1:13,10:32:23:0.435:2	./.	./.	0/1:12,19:32:31:0.613:2
chr3	138289163	rs1673608	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,57:33:124:0.460:2	0/1:35,26:33:61:0.426:2	0/1:70,46:32:116:0.397:2	0/1:0,119:33:119:1.00:2	0/1:0,116:33:116:1.00:2	0/1:113,60:33:173:0.347:2
chr3	138289221	rs1673607	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:97,96:32:193:0.497:2	0/1:40,49:32:89:0.551:2	./.	0/1:97,101:32:198:0.510:2	./.	0/1:113,74:31:187:0.396:2	0/1:95,59:31:154:0.383:2	0/1:112,81:31:193:0.420:2	0/1:0,193:32:193:1.00:2	0/1:0,182:32:182:1.00:2	0/1:120,73:32:193:0.378:2
chr3	138290146	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	138329862	rs811322	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:73,68:33:141:0.482:2	0/1:42,30:32:72:0.417:2	./.	0/1:68,65:32:133:0.489:2	./.	0/1:76,85:32:161:0.528:2	0/1:79,78:32:157:0.497:2	0/1:86,84:33:170:0.494:2	0/1:0,145:34:145:1.00:2	0/1:2,156:33:158:0.987:2	0/1:74,76:32:150:0.507:2
chr3	138347957	rs641320	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:19,21:31:40:0.525:2	0/1:24,18:31:42:0.429:2	./.	./.	0/1:40,30:30:70:0.429:2	./.	./.	./.	./.	./.	./.
chr3	138347988	rs13043	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,26:31:54:0.481:2	0/1:23,29:30:52:0.558:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	138417808	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:32:172:0.023:2	./.
chr3	138665029	rs7432551	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr3	138665796	rs11924939	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:5,12:28:17:0.706:2	0/1:1,4:31:5:0.800:2	./.	./.	./.	./.	./.	0/1:7,4:33:11:0.364:2	./.	./.	./.
chr3	138669222	rs60650442	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:27:12:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr3	138669405	rs146602024	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,54:31:134:0.403:2	./.	./.
chr3	138724593	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,4:30:48:0.083:2	./.	./.	./.	./.	./.	./.	./.
chr3	138724757	rs11924188	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:67,66:33:133:0.496:2	0/1:41,41:32:82:0.500:2	0/1:18,9:33:27:0.333:2	0/1:106,85:32:191:0.445:2	0/1:0,192:32:192:1.00:2	./.	0/1:108,88:33:196:0.449:2	0/1:91,99:33:190:0.521:2	0/1:2,175:33:177:0.989:2	./.	0/1:0,117:32:117:1.00:2
chr3	138739226	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:32:137:0.029:2	./.	./.
chr3	138739482	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.
chr3	138739617	rs1720230	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	0/1:0,3:29:3:1.00:2	0/1:0,4:30:4:1.00:2	./.	0/1:0,4:31:4:1.00:2	0/1:0,2:34:2:1.00:2	./.	./.
chr3	138739723	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:33:95:0.042:2	./.	./.	./.	./.	./.
chr3	138762707	rs7636403	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,30:33:48:0.625:2	0/1:17,11:32:28:0.393:2	./.	./.	./.	0/1:25,21:33:46:0.457:2	./.	./.	./.	./.	./.
chr3	138763002	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,4:32:87:0.046:2	./.	./.	./.	./.	./.	./.	./.
chr3	138763113	rs188589355	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,39:33:95:0.411:2	./.	./.
chr3	139065748	rs11556243	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,37:33:92:0.402:2	./.
chr3	139065808	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:33:184:0.022:2	./.	./.
chr3	139094367	rs200624793	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:66,15:15:81:0.185:2	./.	./.	0/1:95,17:12:112:0.152:2	0/1:83,13:12:96:0.135:2	0/1:113,21:13:135:0.157:2	./.	0/1:118,20:12:138:0.145:2	0/1:121,17:16:138:0.123:2	0/1:71,15:16:86:0.174:2	0/1:77,14:18:92:0.154:2
chr3	139098223	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,4:31:148:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr3	139244762	rs6808946	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,4:32:35:0.114:2	./.	./.	./.	./.	0/1:0,45:33:45:1.00:2	./.	./.
chr3	139257718	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:35:188:0.021:2	./.	./.	./.	./.	./.
chr3	139258411	rs11549984	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,36:30:77:0.468:2	./.	./.	0/1:37,22:30:59:0.373:2	./.
chr3	139258508	rs2071386	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	0/1:0,9:32:9:1.00:2	./.	./.
chr3	139297857	rs79043406	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,93:32:192:0.484:2	./.	./.	./.	./.
chr3	140167395	rs143908906	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:148,4:34:152:0.026:2	./.	./.	./.	./.	./.	./.
chr3	140167536	rs2081803	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:33:69:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,47:33:47:1.00:2	0/1:37,41:33:78:0.526:2	0/1:68,39:34:107:0.364:2	0/1:0,64:33:64:1.00:2	0/1:40,48:33:88:0.545:2
chr3	140178381	rs17348572	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,33:33:72:0.458:2	./.	./.
chr3	140178485	rs7632885	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:2,48:31:50:0.960:2	0/1:1,22:32:23:0.957:2	./.	0/1:0,59:31:59:1.00:2	./.	0/1:0,71:30:71:1.00:2	0/1:0,79:31:79:1.00:2	0/1:66,41:31:107:0.383:2	0/1:29,34:31:63:0.540:2	0/1:18,18:30:36:0.500:2	./.
chr3	140185522	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:31:70:0.057:2	./.
chr3	140281723	rs11714465	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,22:32:64:0.344:2	0/1:26,22:32:48:0.458:2	0/1:3,6:32:9:0.667:2	0/1:1,68:32:69:0.986:2	0/1:65,39:32:104:0.375:2	0/1:0,74:31:74:1.00:2	0/1:80,33:32:113:0.292:2	0/1:77,47:32:124:0.379:2	0/1:37,45:34:82:0.549:2	0/1:41,32:33:73:0.438:2	0/1:47,43:32:90:0.478:2
chr3	140282861	rs10804675	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:94,70:32:164:0.427:2	0/1:65,57:32:122:0.467:2	0/1:27,26:30:54:0.491:2	0/1:0,145:31:145:1.00:2	0/1:115,73:31:188:0.388:2	0/1:1,143:32:144:0.993:2	0/1:119,76:32:195:0.390:2	0/1:107,88:32:195:0.451:2	0/1:100,87:32:187:0.465:2	0/1:85,71:31:157:0.455:2	0/1:56,82:32:138:0.594:2
chr3	140284927	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,6:26:79:0.076:2	./.	./.	./.	./.	./.	./.
chr3	140401693	rs698673	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:32:75:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,100:31:100:1.00:2	0/1:0,137:31:137:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,112:33:112:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,70:33:70:1.00:2
chr3	140406947	rs28594654	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,3:32:13:0.231:2	0/1:29,24:32:53:0.453:2	0/1:46,21:31:67:0.313:2	0/1:3,54:31:57:0.947:2	./.	0/1:39,51:31:90:0.567:2	0/1:30,34:32:64:0.531:2	0/1:23,14:32:37:0.378:2	0/1:38,28:32:66:0.424:2
chr3	140407260	rs9876490	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,21:31:58:0.362:2	0/1:26,23:31:49:0.469:2	0/1:0,50:30:50:1.00:2	./.	0/1:31,31:31:62:0.500:2	0/1:26,28:31:54:0.519:2	0/1:19,20:32:39:0.513:2	0/1:20,18:30:38:0.474:2
chr3	140409919	rs115301879	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:33:12:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	140785175	rs890529	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:4,3:30:7:0.429:2	0/1:0,4:32:4:1.00:2	0/1:0,4:32:4:1.00:2	./.	0/1:4,5:31:9:0.556:2	0/1:6,12:32:18:0.667:2	./.	0/1:2,9:29:11:0.818:2	./.	./.	./.
chr3	140997320	rs11556022	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,65:31:118:0.551:2	./.	0/1:47,38:31:85:0.447:2	./.	./.	0/1:52,48:32:100:0.480:2	./.	./.
chr3	141011630	rs3210458	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,28:31:53:0.528:2	./.	./.	./.	./.	./.
chr3	141162128	rs62282002	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	0/1:15,15:33:30:0.500:2	./.	./.	./.	./.	./.
chr3	141162185	rs16851435	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,27:32:39:0.692:2	./.	./.	./.	./.	./.
chr3	141327474	rs295323	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:77,81:31:158:0.513:2	0/1:40,45:32:85:0.529:2	0/1:0,12:31:12:1.00:2	./.	./.	0/1:110,80:30:190:0.421:2	./.	./.	0/1:99,82:32:181:0.453:2	0/1:111,69:31:180:0.383:2	0/1:95,80:31:175:0.457:2
chr3	141497150	rs1533501	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,35:28:86:0.407:2	./.	0/1:48,35:29:83:0.422:2	./.	./.	./.	./.	./.
chr3	141535558	rs36009541	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,18:33:44:0.409:2	./.	./.	./.	0/1:32,25:33:57:0.439:2
chr3	141535608	rs33928105	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,25:29:79:0.316:2	./.	./.	./.	0/1:47,29:31:77:0.382:2
chr3	141632578	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:33:191:0.021:2	./.
chr3	141688903	rs4683655	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:52,48:32:100:0.480:2	0/1:36,30:32:66:0.455:2	0/1:10,8:32:18:0.444:2	./.	./.	./.	./.	./.	./.	./.	0/1:95,59:32:154:0.383:2
chr3	141724328	rs7627056	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,34:33:72:0.472:2	./.	0/1:44,30:33:74:0.405:2	./.	./.	./.	./.	./.
chr3	141932356	rs6440072	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,24:32:52:0.462:2	0/1:23,14:31:37:0.378:2	0/1:0,9:31:9:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,52:31:52:1.00:2	./.	0/1:3,71:31:74:0.959:2	./.	0/1:45,43:33:88:0.489:2	0/1:0,70:31:70:1.00:2	0/1:55,27:32:82:0.329:2
chr3	142030595	rs78396728	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,8:18:124:0.065:2
chr3	142078759	rs73238159	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:31:11:0.364:2	0/1:1,4:29:5:0.800:2	./.	./.	./.	0/1:14,6:31:20:0.300:2	./.	./.
chr3	142123841	rs2306700	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,83:31:176:0.472:2	0/1:88,80:31:168:0.476:2	./.	./.	./.	0/1:104,82:33:186:0.441:2	./.	./.
chr3	142144330	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,6:33:57:0.105:2	./.	./.	./.	./.	./.	./.
chr3	142168331	rs1802904	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,142:33:144:0.986:2	0/1:0,77:33:77:1.00:2	0/1:22,16:32:38:0.421:2	0/1:0,160:32:160:1.00:2	0/1:0,145:32:145:1.00:2	0/1:0,194:32:194:1.00:2	0/1:122,75:32:197:0.381:2	0/1:0,189:32:189:1.00:2	0/1:0,185:33:185:1.00:2	0/1:0,144:33:144:1.00:2	0/1:0,185:33:185:1.00:2
chr3	142178144	rs2229032	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,16:30:39:0.410:2	./.	./.	./.	0/1:30,34:33:64:0.531:2	./.	./.
chr3	142215233	rs112018640	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,82:31:197:0.416:2	./.	./.	./.
chr3	142217537	rs2227932	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,76:29:141:0.539:2	0/1:99,93:29:192:0.484:2	./.	./.	./.
chr3	142222284	rs2227931	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,44:31:93:0.473:2	0/1:22,17:31:39:0.436:2	0/1:3,6:33:9:0.667:2	0/1:60,51:32:111:0.459:2	0/1:41,41:31:83:0.500:2	./.	./.	./.	0/1:50,56:33:106:0.528:2	0/1:2,95:31:97:0.979:2	0/1:54,51:31:105:0.486:2
chr3	142226895	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:31:58:0.069:2	./.
chr3	142268372	rs28910272	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,30:32:62:0.484:2	./.	./.	./.
chr3	142269075	rs28910271	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,77:32:151:0.510:2	./.	./.	./.
chr3	142272757	rs55895932	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,55:33:127:0.433:2	./.	./.	./.	./.	./.	./.	./.
chr3	142275353	rs28910270	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,20:31:99:0.202:2	./.	./.	./.
chr3	142277536	rs2227929	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:89,50:30:139:0.360:2	0/1:53,43:29:96:0.448:2	0/1:19,7:29:26:0.269:2	0/1:96,64:30:160:0.400:2	0/1:62,46:29:108:0.426:2	./.	./.	./.	0/1:85,73:30:158:0.462:2	0/1:0,118:30:118:1.00:2	0/1:104,70:29:174:0.402:2
chr3	142277575	rs2227930	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,49:31:138:0.358:2	0/1:45,35:31:80:0.438:2	0/1:14,7:31:21:0.333:2	0/1:3,118:31:121:0.975:2	0/1:0,92:31:92:1.00:2	./.	./.	0/1:94,88:32:182:0.484:2	./.	0/1:0,122:32:122:1.00:2	0/1:92,70:32:162:0.432:2
chr3	142279154	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,4:31:27:0.148:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	142280108	rs28897765	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,68:33:170:0.400:2	./.	./.	./.
chr3	142281298	rs28897764	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,13:29:36:0.361:2	./.	./.	./.
chr3	142281353	rs2229033	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,10:32:24:0.417:2	./.	./.
chr3	142281564	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,3:32:43:0.070:2	./.	./.	./.	./.	./.	./.	./.
chr3	142281612	rs2227928	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,20:29:42:0.476:2	0/1:12,9:29:21:0.429:2	./.	0/1:0,26:29:26:1.00:2	0/1:0,34:29:34:1.00:2	./.	./.	0/1:7,22:30:29:0.759:2	0/1:0,34:30:34:1.00:2	0/1:0,28:29:28:1.00:2	0/1:17,19:29:36:0.528:2
chr3	142405190	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,6:31:45:0.133:2	./.	./.	./.	./.	./.
chr3	142408606	rs6793735	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,40:31:91:0.440:2	0/1:31,22:32:53:0.415:2	0/1:7,6:32:13:0.462:2	0/1:1,94:31:95:0.989:2	0/1:0,53:31:53:1.00:2	./.	./.	0/1:82,42:31:124:0.339:2	0/1:0,96:33:96:1.00:2	0/1:0,75:32:75:1.00:2	0/1:78,61:33:139:0.439:2
chr3	142422797	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,43:32:92:0.467:2	./.	./.	./.	./.
chr3	142443441	rs78975236	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,28:28:47:0.596:2	./.	./.	./.	0/1:36,26:28:62:0.419:2	./.	./.
chr3	142467113	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:33:97:0.041:2
chr3	142467245	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:32:155:0.026:2
chr3	142503605	rs7621642	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,75:33:151:0.497:2	0/1:71,82:32:153:0.536:2	./.	./.	0/1:91,85:33:176:0.483:2	0/1:100,86:33:186:0.462:2	./.	./.
chr3	142523293	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:32:79:0.051:2	./.	./.	./.	./.
chr3	142523349	rs3821647	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,58:31:130:0.446:2	./.	./.	0/1:115,84:31:199:0.422:2	0/1:117,79:32:196:0.403:2	./.	./.
chr3	142524858	rs1132030	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,52:31:142:0.366:2	0/1:70,57:32:127:0.449:2	./.	./.	0/1:90,68:31:158:0.430:2	0/1:64,68:33:132:0.515:2	./.	./.
chr3	142542449	rs17554211	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,21:32:38:0.553:2	0/1:8,5:32:13:0.385:2	0/1:0,4:31:4:1.00:2	0/1:26,8:27:34:0.235:2	0/1:24,11:31:35:0.314:2	./.	./.	./.	./.	0/1:20,24:30:44:0.545:2	./.
chr3	142548560	rs35692900	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,83:32:198:0.419:2	./.	./.	./.
chr3	142681249	rs62276870	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,30:31:66:0.455:2	0/1:37,36:30:73:0.493:2	./.	./.	0/1:29,24:31:53:0.453:2	./.
chr3	142681813	rs9844480	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,12:30:27:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	142740198	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,6:32:70:0.086:2	./.	./.	./.	./.	./.
chr3	142746021	rs145720949	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,68:33:159:0.428:2
chr3	142769850	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:31:111:0.036:2
chr3	142841598	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,12:33:33:0.364:2	./.	./.	./.	./.
chr3	142841740	rs6664	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,24:31:24:1.00:2	0/1:0,7:31:7:1.00:2	./.	./.	./.	0/1:13,6:30:19:0.316:2	0/1:3,4:31:7:0.571:2	0/1:8,6:31:14:0.429:2	./.	./.	0/1:15,12:31:27:0.444:2
chr3	142985717	rs2289491	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,67:29:143:0.469:2	./.	./.	./.	./.	./.	./.	./.
chr3	143293012	rs6763202	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:31:15:0.533:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	143704516	rs9847681	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,41:32:98:0.418:2	./.	./.	./.	./.
chr3	143704522	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:33:155:0.026:2	./.	./.	./.
chr3	143708529	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:30:82:0.049:2	./.	./.	./.	./.	./.
chr3	143708570	rs199668779	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:35:73:0.055:2	./.
chr3	145799647	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:31:64:0.063:2
chr3	145912177	rs9815240	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,54:32:56:0.964:2	./.	./.	./.	./.	./.	./.
chr3	145913061	rs34467190	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:32:9:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	145917761	rs1061409	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:41,30:28:71:0.423:2	0/1:29,25:29:54:0.463:2	./.	0/1:51,62:29:113:0.549:2	./.	./.	./.	./.	./.	./.	./.
chr3	145938619	rs3762685	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:41,45:32:86:0.523:2	0/1:24,25:31:49:0.510:2	./.	0/1:46,42:32:88:0.477:2	./.	./.	./.	./.	./.	./.	./.
chr3	146173245	rs113147741	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,6:29:9:0.667:2
chr3	146234853	rs61737861	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:33:123:0.033:2	./.	./.	./.
chr3	146234909	rs343320	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,28:31:78:0.359:2	./.	./.
chr3	146243369	rs2688693	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,59:33:121:0.488:2	0/1:46,50:32:96:0.521:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	146318198	rs370926969	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,9:32:16:0.563:2	./.
chr3	148459395	rs5182	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:32,29:32:62:0.475:2	0/1:22,29:31:51:0.569:2	0/1:0,5:26:5:1.00:2	./.	0/1:15,13:31:28:0.464:2	0/1:25,30:31:55:0.545:2	0/1:15,9:28:25:0.375:2	0/1:20,22:31:42:0.524:2	0/1:38,54:32:92:0.587:2	./.	./.
chr3	148459413	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:33:93:0.043:2	./.	./.
chr3	148459859	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:29:105:0.038:2	./.	./.	./.	./.	./.
chr3	148459884	rs5183	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,60:29:104:0.577:2	0/1:72,54:29:126:0.429:2
chr3	148459988	rs5186	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,45:33:111:0.405:2	0/1:35,17:32:52:0.327:2	./.	./.	0/1:77,52:33:129:0.403:2	./.	0/1:50,41:32:91:0.451:2	0/1:62,66:33:128:0.516:2
chr3	148460037	rs1799870	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,46:32:116:0.397:2	./.	./.
chr3	148460339	rs5189	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,38:33:62:0.613:2
chr3	148460363	rs12721276	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,34:32:83:0.410:2	./.
chr3	148460467	rs440881	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,122:31:122:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,127:31:127:1.00:2	0/1:0,99:31:99:1.00:2	0/1:0,144:31:144:1.00:2	0/1:0,151:31:151:1.00:2	0/1:0,164:31:164:1.00:2	0/1:0,150:32:150:1.00:2	0/1:0,145:31:145:1.00:2	0/1:0,159:31:159:1.00:2
chr3	148460700	rs35393661	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,6:32:6:1.00:2	0/1:0,4:31:4:1.00:2	./.	0/1:3,4:32:7:0.571:2	0/1:0,4:32:4:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,8:31:8:1.00:2	0/1:12,4:32:16:0.250:2	0/1:5,3:31:8:0.375:2	0/1:10,6:33:16:0.375:2
chr3	148562297	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:134,4:32:139:0.029:2	./.	./.	./.	./.	./.	./.
chr3	148562310	rs1059502	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,57:32:123:0.463:2	./.	0/1:66,60:31:126:0.476:2	./.	./.	./.	./.	0/1:76,65:32:141:0.461:2
chr3	148562470	rs73866671	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:34:84:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	148597612	rs12489516	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,115:32:115:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,118:32:118:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,103:31:103:1.00:2	0/1:66,34:31:100:0.340:2	0/1:0,95:32:95:1.00:2	0/1:0,136:32:136:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,141:32:141:1.00:2
chr3	148614447	rs61733454	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,54:31:113:0.478:2	./.	./.	./.
chr3	148712035	rs61733452	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,8:32:21:0.381:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	148714189	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:30:132:0.031:2	./.	./.
chr3	148714217	rs143959979	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:32:101:0.040:2	./.	./.
chr3	148727133	rs4938	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,20:32:47:0.426:2	0/1:19,15:32:34:0.441:2	./.	0/1:21,18:32:39:0.462:2	0/1:20,6:33:26:0.231:2	0/1:26,30:32:56:0.536:2	./.	./.	0/1:29,24:33:53:0.453:2	./.	0/1:40,24:33:64:0.375:2
chr3	148757864	rs2229361	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,21:31:39:0.538:2	./.	./.	./.
chr3	148759325	rs2290725	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,29:31:55:0.527:2	0/1:32,15:31:47:0.319:2	./.	0/1:51,57:31:108:0.528:2	0/1:35,27:29:62:0.435:2	0/1:49,37:31:86:0.430:2	./.	./.	0/1:47,46:31:93:0.495:2	./.	0/1:67,68:30:135:0.504:2
chr3	148766666	rs34474865	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:46,55:33:101:0.545:2	0/1:42,40:32:82:0.488:2	./.	./.	./.	./.	./.	0/1:84,50:32:134:0.373:2	./.	./.	./.
chr3	148766716	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,6:26:180:0.033:2	./.	./.	./.	./.
chr3	148766724	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,5:30:126:0.040:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	148768130	rs16861365	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:33:12:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	148781246	rs61755303	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:29:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	148786085	rs2305868	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,16:33:54:0.296:2	0/1:6,6:33:12:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	148786108	rs812249	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:33:36:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,3:29:3:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,15:32:15:1.00:2	0/1:12,20:32:32:0.625:2	0/1:0,21:33:21:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,41:33:41:1.00:2	./.	0/1:27,23:33:50:0.460:2
chr3	148791057	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:33:110:0.036:2	./.	./.
chr3	148863151	rs11718908	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,22:28:31:0.710:2	./.	0/1:11,15:29:26:0.577:2	./.	./.	./.
chr3	148872987	rs6440589	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,16:31:45:0.356:2	0/1:17,14:32:31:0.452:2	./.	./.	./.	0/1:31,22:31:53:0.415:2	./.	0/1:26,20:32:46:0.435:2	0/1:32,31:33:63:0.492:2	0/1:0,34:32:34:1.00:2	./.
chr3	148880083	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,26:32:57:0.456:2	./.
chr3	148881673	rs3732557	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,19:32:49:0.388:2	./.	./.	./.	0/1:21,23:33:44:0.523:2	./.
chr3	148884951	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:30:75:0.053:2	./.	./.	./.	./.
chr3	148897355	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:33:63:0.063:2	./.	./.	./.	./.
chr3	148899855	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,4:31:101:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr3	148901300	rs115552500	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,9:31:12:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	148903201	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:32:174:0.023:2	./.	./.
chr3	148904434	rs1053709	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,65:32:171:0.380:2	./.	./.	./.
chr3	148905912	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,3:35:52:0.058:2	./.
chr3	148916162	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,3:32:23:0.130:2	./.	./.	./.	0/1:58,4:32:62:0.065:2	./.	./.	./.	./.
chr3	148916235	rs701753	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,170:31:170:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,26:31:26:1.00:2	0/1:1,162:31:163:0.994:2	0/1:0,85:31:85:1.00:2	0/1:0,130:31:130:1.00:2	0/1:0,147:32:147:1.00:2	0/1:0,175:31:175:1.00:2	0/1:1,170:32:171:0.994:2	0/1:2,159:32:161:0.988:2	0/1:129,66:31:195:0.338:2
chr3	148916349	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:34:160:0.025:2
chr3	149040061	rs112912432	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,25:31:53:0.472:2	./.
chr3	149093238	rs4771	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,49:29:49:1.00:2	0/1:1,38:29:39:0.974:2	./.	0/1:0,68:29:68:1.00:2	0/1:34,26:27:60:0.433:2	0/1:47,23:28:70:0.329:2	0/1:0,60:28:60:1.00:2	0/1:0,87:29:87:1.00:2	0/1:54,42:30:96:0.438:2	0/1:0,54:29:55:1.00:2	0/1:49,29:30:78:0.372:2
chr3	149192676	rs12488126	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,34:31:61:0.557:2	0/1:17,26:32:43:0.605:2	0/1:5,4:29:9:0.444:2	0/1:22,38:31:60:0.633:2	./.	./.	./.	./.	./.	0/1:38,29:32:67:0.433:2	0/1:32,37:31:69:0.536:2
chr3	149193684	rs1802837	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:84,44:29:128:0.344:2	0/1:45,37:29:82:0.451:2	./.	0/1:72,64:29:136:0.471:2	0/1:2,121:29:123:0.984:2	0/1:79,52:29:131:0.397:2	0/1:1,116:30:117:0.991:2	0/1:1,119:29:120:0.992:2	0/1:75,51:30:126:0.405:2	./.	0/1:83,53:29:136:0.390:2
chr3	149216629	rs9799030	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:28:196:0.026:2	./.	0/1:76,72:32:148:0.486:2	./.
chr3	149220487	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:32:123:0.033:2	./.	./.	./.
chr3	149220517	rs12636725	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,19:32:70:0.271:2	./.
chr3	149245673	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:32:146:0.027:2	./.	./.	./.
chr3	149290764	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:29:105:0.038:2	./.	./.
chr3	149459341	rs7633238	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,60:32:134:0.448:2	0/1:44,20:31:64:0.313:2	0/1:0,16:31:16:1.00:2	0/1:75,79:33:154:0.513:2	0/1:0,90:32:90:1.00:2	./.	0/1:65,68:32:133:0.511:2	0/1:99,78:32:177:0.441:2	0/1:85,62:33:147:0.422:2	0/1:73,49:32:122:0.402:2	0/1:3,134:32:137:0.978:2
chr3	149459413	rs11549572	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,102:31:195:0.523:2	./.	./.	./.	./.	./.	./.	0/1:104,83:31:188:0.444:2
chr3	149468530	rs9843784	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:68,59:33:127:0.465:2	0/1:31,26:30:57:0.456:2	0/1:2,10:33:12:0.833:2	./.	0/1:49,42:32:91:0.462:2	./.	./.	0/1:81,54:33:135:0.400:2	0/1:64,38:33:102:0.373:2	0/1:65,31:32:96:0.323:2	./.
chr3	149479301	rs954714	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,27:32:61:0.443:2	0/1:24,14:32:38:0.368:2	0/1:0,10:31:10:1.00:2	0/1:40,27:32:67:0.403:2	0/1:33,22:31:55:0.400:2	./.	./.	0/1:46,29:32:75:0.387:2	0/1:41,29:33:70:0.414:2	0/1:25,20:32:45:0.444:2	0/1:69,47:32:116:0.405:2
chr3	149484970	rs75077284	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,40:33:81:0.494:2
chr3	149485293	rs7610425	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:94,80:33:174:0.460:2	0/1:35,42:33:77:0.545:2	0/1:1,22:31:23:0.957:2	0/1:78,82:32:160:0.513:2	0/1:91,65:33:156:0.417:2	./.	./.	0/1:92,87:32:179:0.486:2	0/1:97,93:33:190:0.489:2	0/1:74,92:33:166:0.554:2	./.
chr3	149485603	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:30:92:0.043:2	./.
chr3	149488442	rs7630153	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:35,29:30:64:0.453:2	0/1:15,5:29:20:0.250:2	./.	0/1:29,29:30:58:0.500:2	./.	./.	./.	./.	0/1:0,53:31:53:1.00:2	0/1:18,34:30:52:0.654:2	./.
chr3	149498097	rs62622807	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:33:6:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	149563871	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:32:172:0.023:2	./.	./.	./.
chr3	149678534	rs6768054	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,111:32:111:1.00:2	0/1:1,55:31:56:0.982:2	0/1:8,5:32:13:0.385:2	0/1:79,61:31:140:0.436:2	./.	0/1:0,137:31:137:1.00:2	0/1:66,38:32:104:0.365:2	0/1:68,82:31:150:0.547:2	0/1:93,62:32:155:0.400:2	0/1:0,118:32:118:1.00:2	./.
chr3	149678862	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:31:55:0.073:2	./.	./.	./.
chr3	150127302	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:151,4:33:155:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr3	150128994	rs34647320	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:31:8:0.375:2	./.	./.	./.	./.	./.	0/1:25,18:33:43:0.419:2	./.	0/1:50,36:30:86:0.419:2
chr3	150176352	rs149298464	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,73:31:170:0.429:2	./.	./.	0/1:99,65:31:164:0.396:2	./.	./.	./.	./.
chr3	150280445	rs1132979	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,14:31:14:1.00:2	0/1:0,12:31:12:1.00:2	./.	./.	0/1:14,3:33:17:0.176:2	0/1:0,35:32:35:1.00:2	0/1:0,22:32:22:1.00:2	./.	0/1:22,14:34:36:0.389:2	0/1:2,15:32:17:0.882:2	0/1:14,18:33:32:0.563:2
chr3	150285520	rs2293151	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,10:32:14:0.714:2	0/1:69,68:32:137:0.496:2	./.	./.	./.	./.	./.	./.	./.
chr3	150301037	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:32:116:0.034:2
chr3	150384657	rs114572143	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,45:33:104:0.433:2	./.	./.	./.
chr3	150384662	rs150155678	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:31:107:0.037:2	./.	./.	./.
chr3	150391810	rs73003074	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:30:4:0.750:2	0/1:20,21:30:41:0.512:2	./.	./.	./.	0/1:24,31:30:55:0.564:2	./.	./.	./.
chr3	150403749	rs4680107	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:28,44:33:72:0.611:2	0/1:29,21:32:50:0.420:2	./.	./.	./.	./.	0/1:14,13:32:27:0.481:2	0/1:24,32:32:56:0.571:2	0/1:55,37:33:92:0.402:2	0/1:35,26:33:61:0.426:2	./.
chr3	150404142	rs143235660	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,49:32:98:0.500:2
chr3	150421419	rs17281287	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:25,29:31:54:0.537:2	0/1:16,24:32:40:0.600:2	./.	./.	0/1:105,77:31:182:0.423:2	0/1:45,45:30:90:0.500:2	0/1:79,84:31:163:0.515:2	0/1:87,81:30:168:0.482:2	0/1:52,52:31:104:0.500:2	0/1:28,43:31:71:0.606:2	./.
chr3	150421527	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,5:33:124:0.040:2	0/1:121,5:33:126:0.040:2	0/1:72,4:33:76:0.053:2	0/1:45,4:26:49:0.082:2	./.
chr3	150421548	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,6:23:70:0.086:2	0/1:79,9:17:88:0.102:2	./.	./.	0/1:84,8:18:92:0.087:2	./.	./.	./.
chr3	150421569	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,7:18:61:0.115:2	0/1:66,9:18:75:0.120:2	./.	./.	./.	./.
chr3	150645961	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,3:34:34:0.088:2	./.
chr3	150690439	rs3796242	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:33:11:0.636:2	./.	0/1:63,25:32:88:0.284:2	./.	./.	./.	0/1:37,30:32:68:0.448:2	./.	./.
chr3	150690490	rs111033422	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,18:32:48:0.375:2	./.	./.	./.	./.	./.	./.	./.
chr3	150881774	rs17290219	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,40:28:82:0.488:2	./.	./.	0/1:62,37:27:99:0.374:2
chr3	150911405	rs3732755	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,15:29:47:0.319:2	./.	./.	./.	./.	./.	./.
chr3	150917000	rs3773614	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,52:29:119:0.437:2	./.	./.	./.	./.	./.	./.
chr3	150931385	rs12631155	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,27:30:81:0.333:2	./.	./.	./.	./.	./.	./.
chr3	150931799	rs138172429	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,44:32:113:0.389:2	./.	./.	./.	./.
chr3	150932000	rs16863248	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,32:29:60:0.533:2	./.	./.	./.	./.	./.	./.
chr3	151011969	rs1048408	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,95:31:96:0.990:2	0/1:3,69:31:72:0.958:2	0/1:15,5:31:20:0.250:2	0/1:62,69:30:131:0.527:2	0/1:1,95:30:96:0.990:2	0/1:78,42:30:120:0.350:2	0/1:0,84:30:84:1.00:2	0/1:0,126:31:126:1.00:2	./.	./.	0/1:0,149:31:149:1.00:2
chr3	151012451	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:33:93:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	151012497	rs2242353	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,65:33:66:0.985:2	0/1:1,47:32:48:0.979:2	0/1:0,4:33:4:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,57:32:57:1.00:2	0/1:24,44:32:68:0.647:2	0/1:0,98:33:98:1.00:2	0/1:0,70:33:70:1.00:2	0/1:49,46:34:95:0.484:2	0/1:0,80:33:80:1.00:2	0/1:0,87:32:87:1.00:2
chr3	151012896	rs9819885	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,23:32:47:0.489:2	./.	./.	0/1:2,55:32:57:0.965:2	./.	./.	0/1:40,24:33:64:0.375:2
chr3	151046308	rs1466684	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,80:32:81:0.988:2	0/1:0,65:32:65:1.00:2	0/1:0,13:29:13:1.00:2	0/1:0,83:31:83:1.00:2	0/1:2,80:31:82:0.976:2	0/1:57,62:31:119:0.521:2	0/1:1,90:31:91:0.989:2	0/1:0,100:32:100:1.00:2	0/1:98,44:33:142:0.310:2	0/1:0,86:32:86:1.00:2	0/1:0,127:32:127:1.00:2
chr3	151046484	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,4:33:83:0.048:2	./.	./.	./.	./.	./.	./.
chr3	151056598	rs6809699	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,61:32:62:0.984:2	0/1:1,43:32:44:0.977:2	0/1:0,6:26:6:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,84:31:84:1.00:2	0/1:45,42:32:87:0.483:2	0/1:0,90:32:90:1.00:2	0/1:0,91:33:91:1.00:2	0/1:53,27:34:80:0.338:2	0/1:0,70:33:70:1.00:2	0/1:0,90:32:90:1.00:2
chr3	151056616	rs6785930	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,24:32:61:0.393:2	./.	./.	./.	./.	0/1:51,19:32:70:0.271:2	0/1:0,65:31:65:1.00:2	./.
chr3	151082923	rs1463725	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,71:30:159:0.447:2	./.	./.	./.	./.	./.	./.
chr3	151090424	rs3732765	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:34,16:32:50:0.320:2	0/1:13,11:32:24:0.458:2	0/1:0,2:32:2:1.00:2	./.	./.	0/1:33,36:31:69:0.522:2	./.	./.	./.	0/1:0,55:33:55:1.00:2	0/1:1,50:32:51:0.980:2
chr3	151093961	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:32:109:0.037:2	./.	./.
chr3	151112568	rs3732768	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,12:32:25:0.480:2	0/1:12,11:31:23:0.478:2	./.	0/1:0,27:32:27:1.00:2	./.	./.	./.	./.
chr3	151154666	rs2172250	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,75:30:75:1.00:2	0/1:0,58:29:58:1.00:2	0/1:0,12:30:12:1.00:2	./.	0/1:0,77:29:77:1.00:2	0/1:42,50:29:92:0.543:2	0/1:0,93:29:93:1.00:2	0/1:0,139:29:139:1.00:2	./.	0/1:0,70:29:70:1.00:2	0/1:0,96:29:96:1.00:2
chr3	151155620	rs6781302	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,29:30:31:0.935:2	0/1:0,20:31:20:1.00:2	0/1:0,8:30:8:1.00:2	./.	0/1:0,26:29:26:1.00:2	0/1:20,11:29:31:0.355:2	0/1:0,30:30:30:1.00:2	0/1:1,33:30:34:0.971:2	./.	0/1:0,13:30:13:1.00:2	0/1:0,33:30:33:1.00:2
chr3	151156343	rs144167004	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,52:32:116:0.448:2	./.	./.	./.	./.	./.	./.
chr3	151161112	rs12487205	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,15:31:33:0.455:2	./.	./.	./.	./.	./.	./.	0/1:34,25:30:59:0.424:2
chr3	151165342	rs142039752	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,55:32:117:0.470:2	0/1:19,44:32:63:0.698:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	151165678	rs9871952	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,148:33:148:1.00:2	0/1:0,107:33:107:1.00:2	0/1:0,9:33:9:1.00:2	0/1:64,86:33:150:0.573:2	0/1:1,148:32:149:0.993:2	0/1:77,82:32:159:0.516:2	0/1:0,165:33:165:1.00:2	0/1:0,165:33:165:1.00:2	./.	0/1:0,127:32:127:1.00:2	0/1:81,80:33:161:0.497:2
chr3	151166058	rs17204557	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,82:31:183:0.448:2
chr3	151166422	rs6798252	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,39:32:39:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,7:32:7:1.00:2	./.	0/1:0,34:30:34:1.00:2	0/1:9,7:31:16:0.438:2	0/1:0,36:31:36:1.00:2	0/1:2,29:31:31:0.935:2	./.	0/1:0,21:28:21:1.00:2	./.
chr3	151166723	rs115845945	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,13:32:21:0.619:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	151171439	rs7619322	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,52:33:52:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,5:33:5:1.00:2	./.	0/1:0,39:32:39:1.00:2	0/1:24,32:33:56:0.571:2	0/1:0,43:33:43:1.00:2	0/1:0,45:33:45:1.00:2	./.	0/1:0,54:33:54:1.00:2	./.
chr3	151171542	rs7621591	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:33:39:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,5:33:5:1.00:2	0/1:24,12:32:36:0.333:2	0/1:0,19:31:19:1.00:2	0/1:34,29:32:63:0.460:2	0/1:0,32:32:32:1.00:2	0/1:0,32:33:32:1.00:2	./.	0/1:0,38:32:38:1.00:2	0/1:22,42:33:64:0.656:2
chr3	151176390	rs142214363	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:33:193:0.026:2	./.	./.	./.
chr3	151463421	rs1972977	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,18:32:31:0.581:2	0/1:14,3:32:17:0.176:2	0/1:0,3:32:3:1.00:2	0/1:16,7:31:23:0.304:2	0/1:0,18:31:18:1.00:2	0/1:21,16:31:37:0.432:2	0/1:2,23:31:25:0.920:2	./.	./.	0/1:20,15:32:35:0.429:2	0/1:27,16:30:43:0.372:2
chr3	151545601	rs1803155	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,20:32:20:1.00:2	0/1:0,19:31:19:1.00:2	./.	0/1:0,19:31:19:1.00:2	0/1:1,17:31:18:0.944:2	0/1:6,9:30:15:0.600:2	0/1:0,13:31:13:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,32:32:32:1.00:2
chr3	151598689	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,3:33:55:0.055:2	./.
chr3	152058449	rs13077912	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,46:32:100:0.460:2	./.	./.	0/1:68,68:33:136:0.500:2	./.	./.
chr3	152058684	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:31:169:0.024:2	./.	./.	./.
chr3	152174078	rs201037967	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:122,5:27:127:0.039:2	0/1:126,7:24:133:0.053:2	./.	./.	./.	./.	./.
chr3	152554357	rs701265	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,30:32:64:0.469:2	./.	0/1:38,29:32:67:0.433:2	./.	0/1:38,40:32:78:0.513:2	./.	./.	./.
chr3	152555328	rs7643597	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,26:32:42:0.619:2	./.	./.	./.	./.	./.	./.	./.
chr3	152555655	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,24:33:61:0.393:2	./.	./.	./.
chr3	152881442	rs370521324	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,4:18:4:1.00:2	./.	./.	./.	./.	./.	./.
chr3	152881444	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,4:18:4:1.00:2	./.	./.	./.	./.	./.	./.
chr3	152881449	rs138115718	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:22:5:0.600:2	./.	./.	./.
chr3	152881728	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:33:171:0.023:2	./.	./.	./.
chr3	152882136	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:32:127:0.031:2	./.	./.	./.	./.
chr3	152882147	rs76258578	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,89:32:175:0.509:2	./.	./.	./.	./.	./.	./.	./.
chr3	152882173	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,6:32:149:0.040:2	./.	./.	./.	./.
chr3	152882810	rs61252895	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,19:33:40:0.475:2	./.	./.	./.	./.	./.
chr3	152885563	rs73163271	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,8:33:21:0.381:2	./.	./.	./.	./.	./.
chr3	152885599	rs6785014	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,16:31:23:0.696:2	0/1:4,6:31:10:0.600:2	./.	0/1:0,17:30:17:1.00:2	0/1:11,12:30:23:0.522:2	0/1:12,12:30:24:0.500:2	0/1:12,8:32:20:0.400:2	./.	0/1:11,18:32:29:0.621:2	0/1:5,8:28:13:0.615:2	./.
chr3	152885818	rs6809490	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,24:30:62:0.387:2	./.	./.	./.	./.	./.
chr3	153839866	rs12493885	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:31:94:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,122:30:122:1.00:2	0/1:0,125:31:126:1.00:2	0/1:0,104:31:104:1.00:2	0/1:66,59:31:125:0.472:2	0/1:0,103:33:103:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,79:31:79:1.00:2
chr3	153839959	rs59508481	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,59:31:60:0.983:2	0/1:2,45:31:47:0.957:2	0/1:0,15:30:15:1.00:2	0/1:0,50:30:50:1.00:2	0/1:52,29:30:81:0.358:2	0/1:33,41:30:74:0.554:2	0/1:27,22:30:49:0.449:2	0/1:47,32:30:79:0.405:2	0/1:0,60:30:60:1.00:2	0/1:2,61:31:63:0.968:2	0/1:0,72:29:72:1.00:2
chr3	153839960	rs12497267	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:31:60:1.00:2	0/1:1,46:31:47:0.979:2	0/1:0,15:32:15:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,79:31:80:1.00:2	0/1:0,70:33:70:1.00:2	0/1:0,46:32:46:1.00:2	0/1:45,34:31:79:0.430:2	0/1:0,60:32:60:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,72:31:72:1.00:2
chr3	153840389	rs13096373	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,4:33:8:0.500:2	0/1:6,11:31:17:0.647:2	./.	./.	./.	./.	./.
chr3	153943770	rs74965475	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,77:32:174:0.443:2	./.	./.	./.	./.	./.	./.	./.
chr3	153998632	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,19:31:42:0.452:2	./.	./.	./.	./.	./.	./.	./.
chr3	154002774	rs114098462	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,32:31:77:0.416:2	./.	./.	./.	./.	./.
chr3	154018887	rs9438	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:47,36:33:83:0.434:2	0/1:47,22:33:69:0.319:2	0/1:11,8:32:19:0.421:2	./.	./.	./.	./.	./.	./.	0/1:59,45:32:104:0.433:2	./.
chr3	154021206	rs116333841	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,86:31:188:0.457:2	./.	./.	./.	./.	./.
chr3	154146922	rs34792862	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,9:34:19:0.474:2	0/1:6,9:31:15:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	154802893	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:173,4:32:177:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr3	154802902	rs73875803	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:33:155:0.026:2	./.
chr3	154859912	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:32:108:0.037:2	./.	./.	./.
chr3	155200345	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,5:32:55:0.093:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	155200461	rs142805530	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:31:11:0.636:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	155200563	rs1816522	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,33:31:70:0.471:2	./.	./.	./.	0/1:34,34:32:68:0.500:2	./.
chr3	155203398	rs146644809	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,33:31:67:0.493:2	./.	./.	./.	./.	./.	./.	./.
chr3	155241740	rs9840234	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,63:31:116:0.543:2	0/1:46,37:30:83:0.446:2	0/1:9,12:30:21:0.571:2	0/1:82,75:31:157:0.478:2	0/1:60,94:30:154:0.610:2	0/1:88,81:30:169:0.479:2	0/1:66,74:30:140:0.529:2	0/1:86,75:30:161:0.466:2	0/1:0,151:31:151:1.00:2	0/1:0,112:30:112:1.00:2	0/1:1,148:30:149:0.993:2
chr3	155314034	rs359569	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:28:38:1.00:2	0/1:0,24:28:24:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,60:28:60:1.00:2	0/1:26,24:27:50:0.480:2	0/1:0,48:28:48:1.00:2	0/1:28,21:27:49:0.429:2	0/1:0,77:29:77:1.00:2	0/1:38,20:29:58:0.345:2	0/1:1,38:28:39:0.974:2	0/1:2,55:28:57:0.965:2
chr3	155314114	rs150143990	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:32:14:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	155481609	rs7653384	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:31:26:1.00:2	0/1:0,17:32:17:1.00:2	0/1:3,4:32:7:0.571:2	0/1:0,39:31:39:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,39:30:39:1.00:2	0/1:19,12:31:31:0.387:2	0/1:1,29:31:30:0.967:2	0/1:41,24:32:65:0.369:2	0/1:0,33:31:33:1.00:2	0/1:0,71:31:71:1.00:2
chr3	155485302	rs358733	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,21:32:21:1.00:2	0/1:0,9:31:9:1.00:2	./.	0/1:0,24:32:24:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,24:32:24:1.00:2
chr3	155655384	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,16:33:45:0.356:2	./.	./.	./.
chr3	155861192	rs141838532	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,18:32:70:0.257:2
chr3	156009709	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:34:150:0.027:2	./.
chr3	156249214	rs2280031	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:39,30:31:69:0.435:2	0/1:15,16:29:31:0.516:2	./.	./.	0/1:58,58:30:116:0.500:2	./.	./.	0/1:72,47:30:119:0.395:2	0/1:25,46:30:71:0.648:2	./.	./.
chr3	156266749	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,3:33:50:0.060:2	./.	./.
chr3	156266774	rs9296	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:27,21:32:48:0.438:2	0/1:11,4:33:15:0.267:2	./.	./.	0/1:10,12:29:22:0.545:2	0/1:18,18:32:36:0.500:2	./.	./.	0/1:29,13:32:42:0.310:2	./.	0/1:19,26:32:45:0.578:2
chr3	156729199	rs35223408	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,31:32:60:0.517:2	./.	./.
chr3	156877277	rs34437523	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:33:8:0.500:2	./.
chr3	156877707	rs9814142	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,35:29:94:0.372:2
chr3	156983414	rs7652298	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,8:32:22:0.364:2	0/1:1,119:33:120:0.992:2	./.	0/1:78,76:32:154:0.494:2	0/1:74,51:33:125:0.408:2	0/1:107,78:33:185:0.422:2	0/1:74,71:34:146:0.490:2	0/1:0,106:32:106:1.00:2	0/1:77,68:32:145:0.469:2
chr3	157081324	rs11918974	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,3:27:12:0.250:2	0/1:1,52:32:53:0.981:2	./.	0/1:44,30:32:74:0.405:2	./.	0/1:29,22:32:51:0.431:2	0/1:0,44:33:44:1.00:2	0/1:20,17:32:37:0.459:2	0/1:49,38:32:87:0.437:2
chr3	157099025	rs35554741	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,78:32:181:0.431:2	./.	./.	./.	./.
chr3	157131788	rs1378796	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:44,36:32:80:0.450:2	0/1:33,18:32:51:0.353:2	./.	./.	0/1:37,23:33:60:0.383:2	./.	./.	./.	./.	./.	0/1:57,37:32:94:0.394:2
chr3	157155314	rs3816527	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,18:31:37:0.486:2	0/1:11,8:32:19:0.421:2	0/1:0,5:31:5:1.00:2	0/1:0,52:31:52:1.00:2	./.	0/1:37,23:30:60:0.383:2	0/1:49,34:31:83:0.410:2	0/1:0,76:30:76:1.00:2	0/1:0,41:32:41:1.00:2	0/1:37,9:30:46:0.196:2	0/1:0,27:30:27:1.00:2
chr3	158072637	rs201732321	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,6:21:49:0.122:2	./.	./.	0/1:37,8:15:45:0.178:2	0/1:42,7:17:49:0.143:2	./.
chr3	158320597	rs4875	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,43:30:92:0.473:2	0/1:34,18:27:54:0.346:2	0/1:0,9:30:9:1.00:2	0/1:0,130:30:130:1.00:2	0/1:0,79:30:80:1.00:2	0/1:92,57:30:149:0.383:2	0/1:96,69:30:165:0.418:2	0/1:89,51:30:140:0.364:2	./.	0/1:57,39:32:96:0.406:2	./.
chr3	158320703	rs15967	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,21:30:41:0.525:2	0/1:22,11:32:33:0.333:2	./.	0/1:36,21:30:57:0.368:2	0/1:24,20:29:44:0.455:2	./.	./.	./.	./.	./.	./.
chr3	158362441	rs1864507	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,22:31:60:0.367:2	0/1:9,22:30:31:0.710:2	0/1:0,12:29:12:1.00:2	0/1:1,37:30:38:0.974:2	0/1:0,27:30:27:1.00:2	0/1:27,19:29:46:0.413:2	0/1:27,15:29:42:0.357:2	0/1:44,22:29:66:0.333:2	./.	0/1:27,20:30:47:0.426:2	./.
chr3	158366900	rs2303909	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,21:31:55:0.382:2	0/1:23,17:31:40:0.425:2	0/1:0,7:31:7:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,20:31:20:1.00:2	0/1:27,24:30:51:0.471:2	0/1:37,15:31:52:0.288:2	0/1:37,22:31:59:0.373:2	./.	0/1:25,11:32:36:0.306:2	./.
chr3	158388780	rs8455	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:126,65:29:192:0.340:2	0/1:103,36:29:139:0.259:2	0/1:0,8:27:8:1.00:2	0/1:1,130:29:131:0.992:2	0/1:0,67:29:67:1.00:2	0/1:98,80:29:178:0.449:2	0/1:60,12:31:72:0.167:2	0/1:122,63:29:185:0.341:2	./.	0/1:148,46:30:194:0.237:2	./.
chr3	158428642	rs2307064	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:109,69:32:178:0.388:2	0/1:75,66:32:141:0.468:2	./.	0/1:99,78:31:177:0.441:2	./.	./.	./.	0/1:97,73:32:170:0.429:2	./.	./.	./.
chr3	158428693	rs35475848	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,40:31:100:0.400:2	./.	./.	./.	./.
chr3	158520011	rs28364680	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,8:31:11:0.727:2	0/1:3,8:32:11:0.727:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	158523170	rs140699673	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:33:152:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	158537443	rs3765083	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:3,5:29:8:0.625:2	0/1:0,4:29:4:1.00:2	./.	0/1:0,14:29:14:1.00:2	./.	0/1:0,20:29:20:1.00:2	0/1:0,8:30:8:1.00:2	0/1:5,3:29:8:0.375:2	0/1:13,4:28:17:0.235:2	0/1:4,11:29:15:0.733:2	./.
chr3	158538056	rs4680469	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,98:33:196:0.500:2	0/1:63,60:32:123:0.488:2	./.	0/1:71,49:33:120:0.408:2	./.	./.	./.	./.
chr3	159482768	rs9832139	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:29:6:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr3	159713215	rs35990253	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,25:31:67:0.373:2	./.	./.	./.	./.	./.	./.	./.
chr3	159997061	rs6778728	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,64:33:167:0.383:2	0/1:75,77:32:152:0.507:2	./.
chr3	160075332	rs180860270	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:90,12:33:102:0.118:2	./.	./.	./.	./.	./.	./.
chr3	160093662	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,40:32:91:0.440:2	./.	./.	./.	./.	./.	./.
chr3	160131347	rs33999879	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:31:5:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	160155928	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:33:111:0.036:2	./.	./.
chr3	160156939	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:120,4:30:124:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr3	160156951	rs1141023	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,53:32:129:0.411:2	0/1:51,41:32:92:0.446:2	./.
chr3	160219900	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:31:136:0.029:2	./.
chr3	160219905	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:31:142:0.028:2	./.
chr3	160248657	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:32:156:0.026:2	./.	./.	./.
chr3	160249284	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,5:32:187:0.027:2	./.	./.
chr3	160253686	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,8:17:37:0.216:2
chr3	160939776	rs28711573	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:2,4:27:6:0.667:2	./.	./.	0/1:0,3:28:3:1.00:2	./.	0/1:3,5:26:8:0.625:2	./.	./.	0/1:2,10:31:12:0.833:2	./.	./.
chr3	160952593	rs186916331	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,12:33:13:0.923:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	160956548	rs11539155	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,61:32:132:0.462:2	./.	./.	./.	./.	./.
chr3	160958909	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:32:96:0.042:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	160965063	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:33:81:0.049:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	161220991	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,5:19:30:0.167:2	./.	./.	./.	./.	./.	./.
chr3	161221705	rs3921595	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,35:28:36:0.972:2	0/1:0,22:29:22:1.00:2	0/1:2,3:30:5:0.600:2	./.	0/1:19,15:28:34:0.441:2	./.	0/1:21,10:28:31:0.323:2	./.	./.	0/1:20,26:28:46:0.565:2	0/1:38,38:29:76:0.500:2
chr3	164710189	rs78032315	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,11:32:26:0.423:2	./.
chr3	164712125	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:32:170:0.024:2	./.
chr3	164714532	rs4855271	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:31:18:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,10:30:10:1.00:2	0/1:22,11:30:33:0.333:2	0/1:0,21:29:21:1.00:2	0/1:0,17:31:17:1.00:2	0/1:13,3:30:16:0.188:2	0/1:13,13:31:26:0.500:2	0/1:13,5:31:18:0.278:2	0/1:0,30:30:31:1.00:2
chr3	164730786	rs75253993	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,27:33:66:0.409:2
chr3	164730804	rs74648160	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:31:9:0.556:2	./.	./.	./.	./.	./.	./.	0/1:22,25:31:47:0.532:2	./.
chr3	164739037	rs56082035	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,53:32:136:0.390:2	./.
chr3	164755719	rs150246328	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,59:31:136:0.434:2	./.	./.
chr3	164764719	rs9838509	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:57,39:33:96:0.406:2	0/1:30,33:32:63:0.524:2	./.	0/1:3,145:32:148:0.980:2	0/1:74,53:32:127:0.417:2	0/1:0,133:32:133:1.00:2	0/1:0,108:32:108:1.00:2	0/1:167,5:28:172:0.029:2	./.	./.	0/1:78,62:33:140:0.443:2
chr3	164766967	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:33:190:0.021:2
chr3	164773057	rs9290257	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,12:33:37:0.324:2	0/1:18,10:32:28:0.357:2	./.	0/1:2,37:31:39:0.949:2	0/1:21,30:32:51:0.588:2	0/1:0,57:31:57:1.00:2	0/1:4,45:32:49:0.918:2	./.	./.	./.	0/1:34,19:32:53:0.358:2
chr3	164783165	rs9283633	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:48,60:33:108:0.556:2	0/1:31,39:33:70:0.557:2	./.	0/1:0,102:33:102:1.00:2	0/1:62,34:32:96:0.354:2	0/1:0,98:33:98:1.00:2	0/1:0,85:33:85:1.00:2	./.	./.	./.	0/1:83,44:32:127:0.346:2
chr3	164785196	rs76463353	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,25:31:50:0.500:2
chr3	164793758	rs9290264	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:50,28:32:78:0.359:2	0/1:22,19:32:41:0.463:2	0/1:0,7:32:7:1.00:2	./.	./.	./.	./.	0/1:38,30:31:68:0.441:2	0/1:42,26:32:68:0.382:2	0/1:47,37:31:84:0.440:2	./.
chr3	164905688	rs17449404	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,16:30:40:0.400:2	./.	./.	0/1:44,39:31:83:0.470:2	0/1:55,40:32:95:0.421:2	./.	./.
chr3	164906806	rs3828419	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,27:33:60:0.450:2
chr3	164908199	rs150120835	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	164908279	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,4:31:43:0.093:2	./.	./.	./.	./.	./.	./.	./.
chr3	165491280	rs1803274	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,11:32:60:0.183:2	0/1:37,22:30:59:0.373:2	0/1:29,28:31:57:0.491:2	./.	./.	0/1:0,62:32:62:1.00:2	./.
chr3	165547307	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,28:29:82:0.341:2	./.	./.	./.	./.	./.
chr3	165547329	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,24:33:51:0.480:2	./.	./.	./.	./.	./.	./.
chr3	167000256	rs12638625	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:33:9:0.556:2	./.	./.	0/1:34,18:31:52:0.346:2	./.	0/1:47,20:32:67:0.299:2	./.	0/1:26,17:33:43:0.395:2	0/1:47,48:32:95:0.505:2
chr3	167023493	rs35864545	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,9:31:20:0.450:2	./.	./.	0/1:67,40:32:107:0.374:2	./.	./.	./.	./.	0/1:90,70:32:160:0.438:2
chr3	167023624	rs35190925	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,20:32:50:0.400:2	./.	./.	./.	./.	0/1:47,52:32:99:0.525:2
chr3	167023738	rs13096767	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,12:33:35:0.343:2	0/1:29,6:33:35:0.171:2	./.	0/1:37,22:32:59:0.373:2	0/1:1,34:32:35:0.971:2	./.	./.	0/1:36,26:32:62:0.419:2	0/1:0,31:34:31:1.00:2	0/1:32,21:33:53:0.396:2	0/1:52,33:33:85:0.388:2
chr3	167034814	rs13068132	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:81,70:33:151:0.464:2	0/1:36,52:33:88:0.591:2	./.	0/1:113,85:33:198:0.429:2	0/1:0,111:32:111:1.00:2	./.	./.	0/1:114,76:33:190:0.400:2	0/1:103,94:34:197:0.477:2	0/1:87,49:33:136:0.360:2	0/1:96,96:33:192:0.500:2
chr3	167035332	rs34465133	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,70:30:147:0.476:2	./.	./.
chr3	167051669	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:33:103:0.039:2
chr3	167051726	rs10936530	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:44,3:34:47:0.064:2	0/1:3,5:31:8:0.625:2	./.	./.	0/1:31,31:32:62:0.500:2	./.	0/1:35,30:32:65:0.462:2	0/1:30,24:33:54:0.444:2	0/1:27,43:33:70:0.614:2	0/1:42,51:34:93:0.548:2
chr3	167051769	rs11923054	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,10:33:24:0.417:2	0/1:15,13:32:28:0.464:2	./.	0/1:0,30:33:30:1.00:2	0/1:0,25:32:25:1.00:2	./.	./.	0/1:6,15:33:21:0.714:2	0/1:13,8:34:21:0.381:2	0/1:18,12:33:30:0.400:2	0/1:21,23:34:44:0.523:2
chr3	167068256	rs4619784	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,50:33:85:0.588:2	0/1:20,22:32:42:0.524:2	./.	0/1:1,96:32:97:0.990:2	0/1:2,68:31:70:0.971:2	./.	./.	0/1:75,54:32:129:0.419:2	0/1:45,57:33:102:0.559:2	0/1:64,33:33:97:0.340:2	0/1:69,86:32:155:0.555:2
chr3	167077691	rs4257551	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:32:89:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,152:31:152:1.00:2	0/1:0,74:30:74:1.00:2	0/1:0,112:30:112:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,122:31:122:1.00:2	0/1:0,132:32:132:1.00:2	0/1:0,116:31:116:1.00:2	0/1:0,164:31:164:1.00:2
chr3	167159980	rs9810473	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:7,13:33:20:0.650:2	0/1:2,5:33:7:0.714:2	./.	./.	0/1:9,7:33:16:0.438:2	./.	0/1:1,4:31:6:0.800:2	0/1:9,5:33:14:0.357:2	./.	./.	./.
chr3	167164187	rs2272138	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:13,6:33:19:0.316:2	0/1:7,4:31:11:0.364:2	./.	./.	0/1:3,4:32:7:0.571:2	./.	0/1:9,5:34:14:0.357:2	0/1:5,9:31:14:0.643:2	./.	./.	./.
chr3	167167100	rs6803996	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,48:32:113:0.425:2	0/1:26,31:33:57:0.544:2	0/1:11,7:33:18:0.389:2	0/1:79,84:32:163:0.515:2	0/1:73,55:32:128:0.430:2	0/1:59,50:32:109:0.459:2	./.	./.	0/1:71,72:33:143:0.503:2	./.	./.
chr3	167167186	rs6770577	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,46:33:46:1.00:2	0/1:1,20:33:21:0.952:2	./.	0/1:30,24:33:54:0.444:2	0/1:0,42:32:42:1.00:2	0/1:25,17:33:42:0.405:2	0/1:22,8:33:30:0.267:2	0/1:29,24:32:53:0.453:2	0/1:0,38:34:38:1.00:2	./.	./.
chr3	167184878	rs9841174	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,42:32:42:1.00:2	0/1:0,20:31:20:1.00:2	./.	0/1:23,27:33:50:0.540:2	0/1:0,19:31:19:1.00:2	./.	0/1:9,14:32:23:0.609:2	0/1:13,24:31:37:0.649:2	0/1:0,57:33:57:1.00:2	./.	./.
chr3	167189607	rs17246389	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,20:29:42:0.476:2	0/1:14,9:28:23:0.391:2	./.	0/1:21,26:29:47:0.553:2	0/1:10,15:27:25:0.600:2	./.	./.	./.	0/1:17,24:28:41:0.585:2	./.	./.
chr3	167217960	rs13061106	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:18,10:32:28:0.357:2	0/1:3,6:33:9:0.667:2	./.	./.	0/1:7,9:31:16:0.563:2	./.	0/1:8,4:33:12:0.333:2	./.	./.	./.	./.
chr3	167217964	rs13060964	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,29:29:29:1.00:2	0/1:0,8:29:8:1.00:2	./.	0/1:16,3:30:19:0.158:2	0/1:0,16:30:16:1.00:2	./.	0/1:9,4:26:13:0.308:2	./.	0/1:14,12:31:26:0.462:2	./.	./.
chr3	167506937	rs33917740	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,6:29:27:0.222:2	0/1:13,10:32:23:0.435:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	167506967	rs34582040	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,5:26:28:0.179:2	0/1:17,12:29:29:0.414:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	167510472	rs2229697	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,37:32:86:0.430:2	0/1:31,23:32:54:0.426:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	167512569	rs55872908	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,27:31:58:0.466:2	./.	./.	./.	./.	./.
chr3	167543063	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2	./.	./.
chr3	167747022	rs61743591	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,27:32:44:0.614:2	0/1:20,13:33:33:0.394:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	167758590	rs200396010	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:31:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	168810874	rs17466625	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,38:31:82:0.463:2
chr3	168812871	rs116736168	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,6:30:22:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	168833368	rs201639500	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,11:19:107:0.103:2	0/1:73,15:13:88:0.170:2	./.	./.	0/1:120,10:21:130:0.077:2	0/1:98,11:17:109:0.101:2	./.	0/1:94,18:19:112:0.161:2
chr3	168834352	rs199940663	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,9:14:51:0.176:2	./.	0/1:46,9:13:55:0.164:2	0/1:57,12:16:69:0.174:2
chr3	169098992	rs7622799	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:31:14:0.571:2	./.	0/1:30,40:32:70:0.571:2	./.	./.	./.	./.	./.	./.
chr3	169492101	rs10936599	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,99:31:100:0.990:2	./.	0/1:32,37:31:69:0.536:2	./.	./.	./.	0/1:1,100:32:101:0.990:2	0/1:63,61:32:124:0.492:2
chr3	169514585	rs10936600	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,182:32:185:0.984:2	./.	0/1:115,83:31:198:0.419:2	./.	./.	./.	0/1:2,159:32:161:0.988:2	0/1:120,77:32:197:0.391:2
chr3	169539812	rs61738871	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:33:9:0.556:2	./.	./.	./.	./.	./.	0/1:61,64:33:125:0.512:2	./.	0/1:68,58:32:126:0.460:2
chr3	169539990	rs61754874	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,12:31:18:0.667:2
chr3	169540397	rs1920119	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,11:33:29:0.379:2	0/1:1,148:32:149:0.993:2	./.	0/1:101,91:32:192:0.474:2	./.	./.	0/1:90,71:33:161:0.441:2	0/1:0,166:32:166:1.00:2	0/1:2,148:32:150:0.987:2
chr3	169550953	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:33:89:0.045:2	./.	./.
chr3	169555396	rs78013694	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,21:31:38:0.553:2	./.	./.	./.	./.	./.	./.
chr3	169557842	rs16854445	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,19:32:25:0.760:2	./.	./.	./.	./.	./.	./.	./.	0/1:103,93:33:196:0.474:2
chr3	169558025	rs3732451	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,20:32:29:0.690:2	0/1:2,181:33:183:0.989:2	./.	0/1:85,97:32:182:0.533:2	./.	0/1:99,82:32:181:0.453:2	0/1:0,173:33:173:1.00:2	0/1:0,156:33:156:1.00:2	0/1:1,165:32:166:0.994:2
chr3	169566052	rs147316590	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,16:30:38:0.421:2	./.	./.	./.	./.	./.
chr3	169569432	rs35923425	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:29:12:0.417:2	./.	./.	./.	./.	./.	./.	./.	0/1:57,35:29:92:0.380:2
chr3	169644710	rs10513680	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,26:29:56:0.464:2	./.	./.	./.	0/1:19,31:30:50:0.620:2	./.	./.
chr3	169654216	rs9836170	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,48:33:99:0.485:2	./.	./.
chr3	169656188	rs138055938	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,37:30:84:0.440:2	./.	./.	./.	./.	./.
chr3	169703671	rs2287486	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,17:33:44:0.386:2
chr3	169710614	rs34352823	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,22:31:52:0.423:2	./.	./.	./.	./.	./.	./.
chr3	169801800	rs73030619	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,45:30:108:0.417:2	./.	./.
chr3	169802930	rs1861935	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:31:10:0.400:2	0/1:12,19:30:31:0.613:2	0/1:0,15:31:15:1.00:2	./.	0/1:21,14:31:35:0.400:2	0/1:2,24:32:26:0.923:2	./.	./.	0/1:27,11:29:38:0.289:2
chr3	169815075	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:31:145:0.028:2	./.	./.	./.	./.	./.
chr3	169831277	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,5:30:89:0.056:2
chr3	169896717	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:33:152:0.026:2	./.	./.
chr3	169988286	rs56257047	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:53,40:32:93:0.430:2	0/1:32,25:32:57:0.439:2	./.	./.	0/1:65,47:31:112:0.420:2	0/1:51,44:32:95:0.463:2	0/1:59,54:31:113:0.478:2	./.	./.	./.	./.
chr3	170002295	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:30:72:0.056:2	./.	./.	./.	./.
chr3	170009721	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:34:103:0.039:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	170078232	rs3772173	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,43:30:79:0.544:2	0/1:0,65:30:65:1.00:2	0/1:53,38:29:92:0.418:2	0/1:0,61:30:61:1.00:2	./.	0/1:42,40:31:82:0.488:2	./.	0/1:55,67:30:123:0.549:2
chr3	170108093	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:31:159:0.025:2	./.	./.	./.	./.	./.
chr3	170136972	rs201720518	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,16:12:141:0.114:2	./.	0/1:113,18:12:131:0.137:2	./.	./.	./.
chr3	170198898	rs3732449	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,47:32:48:0.979:2	0/1:0,26:32:26:1.00:2	./.	./.	./.	0/1:36,32:32:68:0.471:2	0/1:71,32:31:103:0.311:2	0/1:41,42:32:83:0.506:2	0/1:40,28:32:68:0.412:2	./.	./.
chr3	170585827	rs139790884	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:32:52:0.077:2	./.	./.	./.
chr3	170585878	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:30:96:0.042:2	./.	./.	./.
chr3	170715830	rs5398	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,16:31:42:0.381:2	./.	0/1:26,13:31:39:0.333:2	0/1:18,16:31:34:0.471:2	0/1:0,31:31:31:1.00:2	./.
chr3	170724955	rs5404	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,36:32:93:0.387:2	0/1:48,45:33:93:0.484:2	./.	./.
chr3	170732300	rs5400	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,75:30:137:0.547:2	0/1:62,59:32:121:0.488:2	0/1:54,62:31:116:0.534:2	./.
chr3	170802090	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,7:31:97:0.072:2	./.	./.	./.	./.	./.
chr3	170802910	rs17857452	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,14:31:42:0.333:2	./.	./.	./.	./.	./.	./.
chr3	170811667	rs16855789	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,52:32:91:0.571:2	./.	./.	./.	./.	./.	./.
chr3	170825905	rs6444960	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:32:20:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,36:33:36:1.00:2	0/1:0,37:34:37:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,52:32:52:1.00:2
chr3	170825920	rs2291900	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:15,12:31:27:0.444:2	0/1:12,6:32:18:0.333:2	./.	0/1:2,33:31:35:0.943:2	./.	./.	0/1:13,14:28:27:0.519:2	./.	./.	./.	0/1:28,23:29:51:0.451:2
chr3	170843782	rs13074171	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,33:32:80:0.413:2	./.	./.	0/1:63,59:32:122:0.484:2	./.	./.	0/1:68,84:33:152:0.553:2
chr3	170893070	rs12637875	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,21:31:55:0.382:2	0/1:16,21:32:37:0.568:2	0/1:0,8:32:8:1.00:2	0/1:29,25:31:54:0.463:2	./.	0/1:0,70:31:70:1.00:2	0/1:31,38:31:69:0.551:2	0/1:18,36:31:54:0.667:2	0/1:32,39:32:71:0.549:2	0/1:23,32:32:55:0.582:2	0/1:49,32:32:81:0.395:2
chr3	170928973	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:34:127:0.031:2	./.	./.
chr3	170946002	rs17217552	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,24:31:56:0.429:2	./.	./.
chr3	171087469	rs3796295	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,21:33:21:1.00:2	0/1:0,27:33:27:1.00:2	0/1:1,4:32:5:0.800:2	0/1:18,18:33:36:0.500:2	0/1:0,35:32:35:1.00:2	0/1:16,22:32:38:0.579:2	0/1:0,32:33:32:1.00:2	./.	0/1:17,25:33:42:0.595:2	./.	0/1:18,19:31:37:0.514:2
chr3	171338237	rs9881788	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,35:31:72:0.486:2	0/1:26,27:32:53:0.509:2	0/1:6,9:32:15:0.600:2	0/1:63,44:33:107:0.411:2	0/1:46,36:31:82:0.439:2	0/1:45,67:32:112:0.598:2	0/1:46,46:33:92:0.500:2	0/1:81,49:33:130:0.377:2	0/1:88,67:34:155:0.432:2	0/1:38,51:31:89:0.573:2	0/1:1,96:33:97:0.990:2
chr3	171394521	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:34:122:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	171395468	rs2124147	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,28:33:62:0.452:2	0/1:21,17:33:38:0.447:2	0/1:6,8:31:14:0.571:2	0/1:48,38:33:86:0.442:2	0/1:49,20:34:69:0.290:2	0/1:36,33:33:69:0.478:2	0/1:53,32:33:85:0.376:2	0/1:54,43:33:97:0.443:2	0/1:48,42:34:90:0.467:2	0/1:29,37:33:66:0.561:2	0/1:0,72:33:72:1.00:2
chr3	171404478	rs2290480	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,32:31:92:0.348:2	0/1:97,45:31:142:0.317:2	./.	0/1:75,49:32:124:0.395:2	./.	0/1:56,36:32:92:0.391:2	0/1:0,115:31:115:1.00:2
chr3	171405195	rs377021980	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:32:195:0.021:2	./.	./.	./.
chr3	171455701	rs146060699	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,5:32:13:0.385:2	0/1:44,34:32:78:0.436:2	./.	./.	./.	./.	./.	./.	./.
chr3	171969077	rs7652177	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,29:33:51:0.569:2	0/1:10,12:32:22:0.545:2	0/1:2,4:33:6:0.667:2	0/1:24,34:32:58:0.586:2	0/1:29,30:32:59:0.508:2	0/1:24,34:32:58:0.586:2	0/1:37,12:31:49:0.245:2	0/1:44,28:32:72:0.389:2	0/1:37,16:33:53:0.302:2	0/1:30,27:33:57:0.474:2	0/1:0,50:33:50:1.00:2
chr3	171969228	rs35366330	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,48:33:110:0.436:2	./.	./.
chr3	172046861	rs2270568	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,126:32:128:0.984:2	0/1:0,72:32:73:1.00:2	0/1:0,16:32:16:1.00:2	0/1:101,88:33:189:0.466:2	./.	0/1:105,73:32:179:0.410:2	./.	0/1:0,162:32:162:1.00:2	0/1:0,155:33:155:1.00:2	./.	./.
chr3	172058914	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:33:63:0.063:2	./.	./.
chr3	172165727	rs572169	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,46:32:130:0.354:2	0/1:50,51:31:101:0.505:2	./.	./.	./.	0/1:32,40:31:72:0.556:2	./.
chr3	172166033	rs495225	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,30:25:33:0.968:2	0/1:1,17:28:19:0.944:2	0/1:0,4:26:4:1.00:2	0/1:0,40:25:41:1.00:2	0/1:1,63:25:65:0.984:2	0/1:30,15:24:46:0.333:2	0/1:22,30:27:52:0.577:2	0/1:27,18:28:45:0.400:2	0/1:21,13:29:34:0.382:2	0/1:0,27:24:27:1.00:2	0/1:15,14:26:29:0.483:2
chr3	172224303	rs1131532	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,84:30:86:0.977:2	0/1:0,73:29:73:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,94:30:94:1.00:2	0/1:4,77:29:81:0.951:2	0/1:2,110:29:112:0.982:2	0/1:66,43:31:109:0.394:2	0/1:63,37:30:100:0.370:2	0/1:1,118:30:119:0.992:2	0/1:50,37:30:87:0.425:2	0/1:89,62:29:151:0.411:2
chr3	172224342	rs189476741	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,29:29:70:0.414:2	./.	./.	./.	./.	./.	./.
chr3	172353780	rs144598161	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,38:32:77:0.494:2	./.	./.	./.	./.
chr3	172365832	rs2302815	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:32:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	0/1:53,50:33:103:0.485:2
chr3	172428782	rs2276805	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:79,51:28:131:0.392:2	0/1:56,35:28:91:0.385:2	./.	0/1:4,154:29:158:0.975:2	0/1:96,72:28:168:0.429:2	0/1:2,168:29:170:0.988:2	0/1:1,87:29:88:0.989:2	0/1:1,142:29:143:0.993:2	0/1:1,103:30:105:0.990:2	0/1:81,50:29:131:0.382:2	0/1:2,81:29:83:0.976:2
chr3	172428841	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,50:32:91:0.549:2	./.	./.	./.	./.	./.	./.	./.
chr3	172694756	rs78224319	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,8:18:64:0.125:2	./.	./.	./.	./.	./.	./.	./.
chr3	172766777	rs55724801	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,67:31:127:0.528:2	./.	./.	./.	./.	./.
chr3	172766822	rs508508	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,63:31:129:0.488:2	./.	0/1:48,51:30:99:0.515:2	./.	./.	./.	./.
chr3	172835082	rs16846616	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,84:31:174:0.483:2	./.	./.	./.	./.	./.
chr3	172835092	rs140920981	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,88:32:193:0.456:2	./.	./.	./.	./.
chr3	172835125	rs1515442	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,70:32:165:0.424:2	0/1:110,68:33:178:0.382:2	./.	./.	0/1:73,88:32:161:0.547:2	./.
chr3	172835290	rs1515441	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,71:31:189:0.376:2	./.	./.	./.	./.	./.
chr3	172835469	rs115897458	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,72:28:170:0.424:2	./.	./.	./.	./.
chr3	173997153	rs7646919	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:68,52:31:120:0.433:2	0/1:38,38:32:76:0.500:2	./.	./.	0/1:70,38:31:108:0.352:2	./.	0/1:65,53:32:118:0.449:2	./.	./.	./.	0/1:71,65:31:136:0.478:2
chr3	173998626	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,3:31:22:0.136:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	173998955	rs16858840	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,28:30:68:0.412:2	./.	./.	./.	./.	./.
chr3	174814738	rs9823911	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,130:33:130:1.00:2	0/1:0,74:32:74:1.00:2	./.	0/1:75,78:33:153:0.510:2	0/1:63,52:33:115:0.452:2	0/1:84,73:32:157:0.465:2	0/1:2,140:32:142:0.986:2	0/1:87,55:33:142:0.387:2	0/1:112,65:33:177:0.367:2	./.	0/1:79,74:33:153:0.484:2
chr3	174814920	rs9836841	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:32:67:1.00:2	0/1:0,31:33:31:1.00:2	0/1:2,3:33:5:0.600:2	0/1:31,26:33:57:0.456:2	0/1:22,18:32:40:0.450:2	0/1:18,26:32:44:0.591:2	0/1:0,44:33:44:1.00:2	0/1:30,13:33:43:0.302:2	0/1:28,26:32:54:0.481:2	./.	0/1:43,39:32:82:0.476:2
chr3	174951756	rs4371530	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:22,20:31:42:0.476:2	0/1:15,14:31:29:0.483:2	./.	0/1:1,40:31:41:0.976:2	./.	0/1:1,45:30:46:0.978:2	0/1:0,24:31:24:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,38:30:38:1.00:2	./.
chr3	175165079	rs6802937	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,51:30:52:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,61:30:61:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,80:30:80:1.00:2
chr3	175189447	rs9290555	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:93,51:32:144:0.354:2	0/1:81,39:32:120:0.325:2	0/1:12,4:31:16:0.250:2	0/1:87,53:31:140:0.379:2	0/1:63,29:32:92:0.315:2	0/1:1,95:31:96:0.990:2	0/1:60,25:32:85:0.294:2	./.	0/1:114,46:32:160:0.288:2	0/1:66,44:31:110:0.400:2	0/1:131,56:31:187:0.299:2
chr3	175345143	rs9866564	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,14:31:34:0.412:2	0/1:12,5:28:17:0.294:2	./.	0/1:12,13:32:25:0.520:2	0/1:0,12:30:12:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,27:29:27:1.00:2	0/1:1,17:30:18:0.944:2	0/1:17,16:30:33:0.485:2	0/1:0,49:29:49:1.00:2
chr3	175473047	rs9826737	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,99:33:99:1.00:2	0/1:0,55:33:55:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,153:32:153:1.00:2	0/1:2,148:31:150:0.987:2	0/1:97,64:32:161:0.398:2	0/1:0,179:32:179:1.00:2	0/1:0,180:32:180:1.00:2	0/1:0,151:33:151:1.00:2	0/1:0,153:32:153:1.00:2	0/1:0,119:32:119:1.00:2
chr3	176752050	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:32:41:0.098:2	./.	./.	./.	./.
chr3	176755901	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,5:32:91:0.055:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	176755904	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,69:29:142:0.486:2	./.	./.	./.	./.	./.
chr3	176755910	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,5:32:100:0.050:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	176755918	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,5:32:100:0.050:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	176765269	rs3749234	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:72,75:33:147:0.510:2	0/1:50,41:32:91:0.451:2	./.	./.	./.	./.	0/1:75,49:33:124:0.395:2	0/1:80,84:33:164:0.512:2	0/1:109,73:33:183:0.401:2	0/1:84,66:32:150:0.440:2	./.
chr3	178546026	rs9831934	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,59:32:119:0.496:2	0/1:29,32:32:61:0.525:2	0/1:0,16:33:16:1.00:2	0/1:65,79:32:144:0.549:2	./.	./.	0/1:95,53:32:148:0.358:2	0/1:68,53:32:121:0.438:2	0/1:115,66:33:181:0.365:2	0/1:0,103:32:103:1.00:2	0/1:3,155:33:158:0.981:2
chr3	178560581	rs6443583	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,68:32:118:0.576:2	0/1:29,43:32:72:0.597:2	0/1:0,15:32:15:1.00:2	0/1:79,81:32:160:0.506:2	./.	./.	0/1:56,62:32:118:0.525:2	0/1:78,84:32:162:0.519:2	0/1:89,74:33:163:0.454:2	0/1:0,122:33:123:1.00:2	0/1:0,146:32:146:1.00:2
chr3	178742870	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:32:132:0.030:2	./.	./.	./.	./.	./.
chr3	178927410	rs2230461	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,10:32:15:0.667:2	0/1:93,74:33:167:0.443:2	./.	./.	./.	./.	./.	0/1:1,155:32:157:0.994:2	0/1:79,117:33:196:0.597:2
chr3	178942572	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:34:138:0.029:2	./.	./.
chr3	178957783	rs3976507	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:111,78:32:189:0.413:2	0/1:65,62:32:127:0.488:2	0/1:18,19:32:37:0.514:2	0/1:112,84:32:196:0.429:2	./.	./.	./.	0/1:121,77:32:198:0.389:2	0/1:120,73:33:193:0.378:2	0/1:2,189:32:191:0.990:2	0/1:116,77:32:193:0.399:2
chr3	178960969	rs367748160	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,50:30:181:0.276:2	./.
chr3	178960980	rs200501591	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,51:31:195:0.263:2	./.	./.	./.	./.	./.
chr3	178961038	rs139527128	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,58:34:196:0.296:2	./.	./.
chr3	178968634	rs7645550	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:72,57:30:129:0.442:2	0/1:46,30:31:76:0.395:2	./.	./.	0/1:63,61:29:124:0.492:2	0/1:98,57:29:155:0.368:2	./.	0/1:111,86:30:198:0.437:2	0/1:0,139:30:139:1.00:2	./.	./.
chr3	178968660	rs1170672	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,79:31:172:0.459:2
chr3	178976699	rs7648422	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,17:33:37:0.459:2	0/1:102,92:33:194:0.474:2	./.	./.	./.	./.	./.	0/1:1,185:33:186:0.995:2	0/1:114,76:33:190:0.400:2
chr3	178976777	rs11720871	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:56,81:32:137:0.591:2	0/1:46,43:32:89:0.483:2	./.	0/1:92,91:32:183:0.497:2	0/1:91,95:31:186:0.511:2	0/1:101,76:32:177:0.429:2	0/1:64,94:31:159:0.595:2	0/1:94,100:32:194:0.515:2	0/1:84,93:32:177:0.525:2	./.	./.
chr3	179051472	rs35983049	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:36,32:33:68:0.471:2	0/1:27,21:33:48:0.438:2	./.	./.	0/1:43,39:33:82:0.476:2	./.	./.	0/1:34,50:33:84:0.595:2	./.	./.	./.
chr3	179052206	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,28:32:80:0.350:2
chr3	179085854	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:32:133:0.030:2	./.	./.	./.	./.
chr3	179093049	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:32:120:0.033:2	./.
chr3	179096405	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,3:31:30:0.100:2	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:30:47:0.085:2	./.
chr3	179096508	rs7637065	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,119:29:119:1.00:2	0/1:0,69:29:69:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,82:29:82:1.00:2	0/1:0,83:29:83:1.00:2	0/1:0,81:29:81:1.00:2	0/1:1,82:29:83:0.988:2	0/1:0,83:29:83:1.00:2	0/1:0,130:30:130:1.00:2	0/1:0,90:30:90:1.00:2	0/1:0,141:29:141:1.00:2
chr3	179104293	rs143654910	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,46:33:91:0.505:2	./.	./.	./.	./.	./.
chr3	179104323	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:113,4:30:117:0.034:2	./.	./.	./.	./.	./.	./.
chr3	179104360	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:137,4:31:141:0.028:2	./.	./.	./.	./.	./.	./.
chr3	179104369	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:130,4:31:134:0.030:2	./.	./.	./.	./.	./.	./.
chr3	179137273	rs1362650	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:31:79:1.00:2	0/1:1,34:28:35:0.971:2	0/1:3,3:28:6:0.500:2	0/1:45,51:30:96:0.531:2	0/1:4,55:31:59:0.932:2	0/1:0,77:30:77:1.00:2	0/1:45,44:30:89:0.494:2	0/1:47,41:30:88:0.466:2	0/1:0,91:31:91:1.00:2	./.	./.
chr3	179143941	rs1078749	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,32:32:70:0.457:2	./.
chr3	179143973	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:33:103:0.039:2	./.	./.	./.	./.
chr3	179287977	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,4:31:66:0.061:2	./.	./.	./.	./.	./.	./.
chr3	179298999	rs1132429	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,135:31:139:0.971:2	0/1:0,76:31:76:1.00:2	0/1:20,5:32:25:0.200:2	0/1:0,178:31:178:1.00:2	0/1:1,149:30:150:0.993:2	0/1:97,79:30:176:0.449:2	0/1:99,89:31:188:0.473:2	0/1:108,80:31:189:0.426:2	./.	0/1:102,65:31:167:0.389:2	0/1:0,161:31:161:1.00:2
chr3	179306775	rs10513762	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,31:32:45:0.689:2	./.	0/1:23,21:30:44:0.477:2	0/1:21,14:31:35:0.400:2	./.	./.	./.	./.
chr3	179311670	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,21:28:39:0.538:2	./.
chr3	179322329	rs143015870	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,20:31:56:0.357:2	./.
chr3	179322385	rs2339844	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,23:31:55:0.418:2	./.	0/1:20,20:32:40:0.500:2	0/1:22,22:32:44:0.500:2	./.	./.	./.	./.
chr3	179322632	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:31:46:0.087:2
chr3	179341805	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:33:137:0.029:2	./.	./.
chr3	179371154	rs2276803	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,51:31:107:0.477:2	./.	0/1:36,47:31:83:0.566:2	0/1:0,89:31:89:1.00:2	./.	./.	./.	0/1:21,27:31:48:0.563:2
chr3	179408054	rs61760203	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,52:30:125:0.416:2
chr3	179597827	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:32:192:0.021:2	./.	./.
chr3	180325487	rs9858483	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,10:32:14:0.714:2	0/1:4,5:32:9:0.556:2	./.	./.	./.	./.	./.	0/1:9,24:33:33:0.727:2
chr3	180328027	rs34873940	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:15,13:28:28:0.464:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,14:29:20:0.700:2	0/1:19,27:29:46:0.587:2
chr3	180332733	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,4:31:18:0.222:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	180334623	rs7612917	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:29:10:0.400:2	0/1:42,30:30:72:0.417:2	0/1:32,18:29:50:0.360:2	./.	./.	./.	./.	0/1:33,14:31:47:0.298:2	0/1:32,27:31:59:0.458:2
chr3	180334719	rs11914833	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:30,24:32:54:0.444:2	0/1:12,8:31:20:0.400:2	./.	./.	./.	./.	./.	./.	./.	0/1:25,15:31:40:0.375:2	./.
chr3	180359902	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:32:178:0.022:2	./.	./.	./.	./.	./.
chr3	180365956	rs6769457	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,40:33:73:0.548:2	0/1:23,20:30:43:0.465:2	0/1:2,3:32:5:0.600:2	0/1:31,40:31:71:0.563:2	0/1:20,16:32:36:0.444:2	./.	./.	./.	./.	0/1:0,57:32:57:1.00:2	0/1:59,37:31:96:0.385:2
chr3	180366067	rs2338436	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:58,45:32:103:0.437:2	0/1:21,30:33:51:0.588:2	./.	./.	./.	./.	./.	./.	./.	0/1:55,52:33:107:0.486:2	./.
chr3	180369283	rs183413880	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,10:32:56:0.179:2	./.	./.
chr3	180377311	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:33:172:0.023:2	./.	./.
chr3	180685976	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,3:31:30:0.100:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	180687949	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:31:130:0.031:2	./.	./.	./.	./.	./.
chr3	180703731	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:30:75:0.053:2	./.	./.	./.	./.
chr3	180703747	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,6:33:75:0.080:2	./.	./.	./.	./.
chr3	180703748	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:32:75:0.053:2	./.	./.	./.	./.
chr3	181431571	rs11915160	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,33:30:66:0.500:2	./.	./.	0/1:0,63:32:63:1.00:2	./.	./.
chr3	182583272	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:33:90:0.044:2	./.	./.	./.
chr3	182583338	rs111933747	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,24:31:62:0.387:2	./.	./.	./.	./.	./.
chr3	182614493	rs4859142	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,87:29:177:0.492:2	./.	0/1:99,81:30:180:0.450:2	./.	./.	./.
chr3	182679126	rs144588807	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,21:33:45:0.467:2	./.
chr3	182681740	rs4859146	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:61,67:33:128:0.523:2	0/1:48,22:32:70:0.314:2	0/1:5,11:31:16:0.688:2	./.	0/1:2,151:32:153:0.987:2	0/1:1,167:31:168:0.994:2	0/1:2,160:32:162:0.988:2	0/1:2,182:32:184:0.989:2	0/1:2,166:32:168:0.988:2	0/1:48,54:32:102:0.529:2	0/1:102,89:33:191:0.466:2
chr3	182740282	rs138480247	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,44:32:100:0.440:2	./.	./.	./.	./.	./.
chr3	182755209	rs2270968	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,47:31:93:0.505:2	0/1:23,24:32:47:0.511:2	0/1:5,5:32:10:0.500:2	0/1:68,41:32:109:0.376:2	0/1:0,82:32:82:1.00:2	0/1:0,115:32:115:1.00:2	0/1:0,97:32:97:1.00:2	0/1:2,104:32:106:0.981:2	0/1:0,137:33:137:1.00:2	0/1:0,83:32:83:1.00:2	0/1:60,68:32:128:0.531:2
chr3	182790249	rs7622479	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,44:32:44:1.00:2	0/1:0,30:32:30:1.00:2	./.	0/1:0,51:31:51:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,43:31:43:1.00:2
chr3	182810288	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,5:31:129:0.039:2	./.
chr3	182853670	rs482912	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,35:32:61:0.574:2	0/1:16,22:32:38:0.579:2	0/1:8,3:33:11:0.273:2	0/1:46,32:32:78:0.410:2	0/1:0,62:32:62:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,63:32:63:1.00:2	0/1:1,80:32:81:0.988:2	0/1:39,29:34:68:0.426:2	0/1:0,69:33:69:1.00:2	0/1:38,45:33:83:0.542:2
chr3	182871962	rs653316	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,84:32:171:0.491:2	0/1:88,78:32:166:0.470:2	0/1:32,33:32:65:0.508:2	0/1:104,87:31:191:0.455:2	0/1:0,162:31:162:1.00:2	0/1:0,158:31:158:1.00:2	0/1:4,166:32:170:0.976:2	0/1:0,177:32:179:1.00:2	0/1:94,78:33:172:0.453:2	0/1:0,178:32:178:1.00:2	0/1:0,172:32:172:1.00:2
chr3	182897920	rs35070271	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,43:30:90:0.478:2
chr3	182925404	rs6804951	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:32:92:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,13:31:13:1.00:2	0/1:1,140:33:141:0.993:2	0/1:0,100:32:100:1.00:2	0/1:97,45:33:142:0.317:2	0/1:74,31:30:105:0.295:2	0/1:0,145:32:145:1.00:2	0/1:0,127:33:127:1.00:2	0/1:0,120:31:120:1.00:2	0/1:3,113:32:116:0.974:2
chr3	182989800	rs78804737	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,28:30:76:0.368:2	./.	./.
chr3	183027542	rs7639705	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:33:15:0.533:2	./.	./.	0/1:69,50:33:119:0.420:2	./.	./.	./.	./.	./.
chr3	183041098	rs185884965	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,15:31:50:0.300:2	./.	./.	./.	./.	./.	./.
chr3	183107490	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:33:105:0.039:2	./.
chr3	183209751	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:33:152:0.026:2	./.	./.
chr3	183211906	rs1520101	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:62,51:30:113:0.451:2	0/1:32,41:29:73:0.562:2	0/1:15,7:30:22:0.318:2	./.	0/1:0,103:29:103:1.00:2	./.	./.	./.	0/1:91,77:30:168:0.458:2	0/1:85,59:30:144:0.410:2	0/1:90,60:29:150:0.400:2
chr3	183212026	rs2256061	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:25,33:33:58:0.569:2	0/1:9,22:32:31:0.710:2	./.	./.	0/1:4,37:31:41:0.902:2	./.	./.	./.	./.	./.	./.
chr3	183226114	rs73188786	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,39:31:69:0.565:2	./.	./.	./.	./.	./.	./.
chr3	183368216	rs3755648	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,72:31:72:1.00:2	0/1:4,35:31:39:0.897:2	./.	0/1:35,30:30:65:0.462:2	./.	0/1:38,37:30:75:0.493:2	0/1:21,27:30:48:0.563:2	0/1:46,48:30:94:0.511:2	./.	./.	0/1:60,40:31:100:0.400:2
chr3	183368891	rs2293031	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:2,126:32:129:0.984:2	0/1:1,80:32:81:0.988:2	./.	0/1:96,65:32:161:0.404:2	./.	0/1:92,66:31:158:0.418:2	0/1:83,67:32:150:0.447:2	0/1:64,82:32:146:0.562:2	./.	./.	0/1:64,77:31:141:0.546:2
chr3	183432983	rs3736535	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,95:32:190:0.503:2	./.	./.	./.	./.
chr3	183442219	rs16858033	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,6:34:26:0.231:2	./.	./.	./.	./.
chr3	183476685	rs262993	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:97,90:32:187:0.481:2	0/1:99,68:31:167:0.407:2	0/1:15,13:31:28:0.464:2	0/1:113,77:32:190:0.405:2	0/1:0,158:31:158:1.00:2	0/1:80,103:31:183:0.563:2	0/1:109,79:31:188:0.420:2	0/1:110,81:31:191:0.424:2	0/1:107,70:32:177:0.395:2	./.	0/1:95,85:32:180:0.472:2
chr3	183493846	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:33:60:0.067:2
chr3	183504042	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,4:31:47:0.085:2	./.	./.	./.	./.	./.	./.
chr3	183515754	rs34839729	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,67:32:126:0.532:2	./.	./.	./.	./.
chr3	183521133	rs263042	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,21:29:42:0.500:2	0/1:12,15:30:27:0.556:2	0/1:0,5:29:5:1.00:2	0/1:16,20:30:36:0.556:2	0/1:0,33:29:33:1.00:2	0/1:14,23:30:37:0.622:2	0/1:0,35:31:35:1.00:2	0/1:33,29:30:62:0.468:2	0/1:28,24:31:52:0.462:2	./.	0/1:30,26:29:56:0.464:2
chr3	183521939	rs34612765	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,43:30:101:0.426:2	./.	0/1:65,63:30:128:0.492:2	./.	./.	./.
chr3	183547425	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:32:160:0.025:2	./.	./.	./.	./.	./.
chr3	183558402	rs3732581	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,86:32:87:0.989:2	0/1:4,156:32:160:0.975:2	0/1:79,55:33:134:0.410:2	0/1:4,151:33:155:0.974:2	0/1:97,98:33:195:0.503:2	./.	0/1:114,81:33:195:0.415:2
chr3	183560195	rs13091	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,30:32:31:0.968:2	0/1:1,50:32:51:0.980:2	0/1:19,9:31:28:0.321:2	0/1:0,37:31:37:1.00:2	0/1:24,17:33:41:0.415:2	./.	0/1:31,21:33:52:0.404:2
chr3	183560199	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:30:49:0.082:2
chr3	183560229	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:29:38:0.105:2
chr3	183660585	rs3749442	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,100:32:102:0.980:2	0/1:0,66:32:66:1.00:2	0/1:7,9:32:16:0.563:2	./.	0/1:44,57:32:101:0.564:2	0/1:48,56:31:104:0.538:2	0/1:72,57:31:129:0.442:2	./.	0/1:79,60:33:139:0.432:2	0/1:51,53:32:104:0.510:2	0/1:55,60:31:115:0.522:2
chr3	183667875	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,4:33:79:0.051:2	./.	./.	./.	./.	./.	./.	./.
chr3	183682960	rs2271937	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,31:32:72:0.431:2	./.	./.	./.	./.	./.	./.	./.
chr3	183685534	rs939336	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:30:48:1.00:2	0/1:0,22:29:22:1.00:2	0/1:3,3:29:6:0.500:2	0/1:41,34:29:75:0.453:2	0/1:18,29:29:47:0.617:2	0/1:0,55:29:55:1.00:2	0/1:0,49:29:49:1.00:2	0/1:0,68:29:68:1.00:2	0/1:37,28:32:65:0.431:2	0/1:34,31:28:65:0.477:2	0/1:0,92:30:92:1.00:2
chr3	183696402	rs1132776	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:31:25:1.00:2	0/1:0,10:31:10:1.00:2	0/1:1,2:31:3:0.667:2	0/1:15,9:31:24:0.375:2	0/1:12,8:30:20:0.400:2	0/1:2,22:31:24:0.917:2	0/1:0,14:29:14:1.00:2	0/1:0,31:31:31:1.00:2	0/1:13,13:31:26:0.500:2	0/1:17,11:30:28:0.393:2	0/1:0,16:31:16:1.00:2
chr3	183699516	rs7636910	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,33:33:95:0.347:2	./.	0/1:46,29:32:75:0.387:2	0/1:35,39:33:74:0.527:2	0/1:2,80:33:82:0.976:2	./.	./.	0/1:77,63:33:140:0.450:2
chr3	183703138	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:31:63:0.063:2
chr3	183732156	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:31:96:0.042:2	./.
chr3	183749601	rs75361486	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:18,10:32:28:0.357:2	0/1:9,6:32:15:0.400:2	./.	./.	./.	./.	0/1:25,22:30:47:0.468:2	./.	./.	./.	./.
chr3	183753777	rs36092077	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:18,23:33:41:0.561:2	0/1:21,20:32:41:0.488:2	0/1:1,10:31:11:0.909:2	./.	0/1:24,32:31:56:0.571:2	./.	./.	./.	0/1:26,43:33:69:0.623:2	./.	0/1:21,30:33:51:0.588:2
chr3	183754278	rs73183412	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,64:31:140:0.457:2	./.
chr3	183754294	rs6443930	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:70,47:33:117:0.402:2	0/1:36,26:33:62:0.419:2	./.	0/1:70,70:33:140:0.500:2	./.	0/1:1,115:32:116:0.991:2	0/1:0,121:33:121:1.00:2	0/1:1,128:33:129:0.992:2	./.	0/1:72,53:33:125:0.424:2	0/1:56,54:33:110:0.491:2
chr3	183754585	rs56365132	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,42:32:101:0.416:2	./.	./.	./.	./.	./.	./.	./.
chr3	183755822	rs1000952	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,36:31:80:0.450:2	0/1:32,27:30:59:0.458:2	0/1:2,10:30:12:0.833:2	0/1:52,36:32:88:0.409:2	0/1:48,50:31:98:0.510:2	0/1:0,94:31:94:1.00:2	0/1:1,112:32:113:0.991:2	0/1:0,108:32:108:1.00:2	0/1:49,49:33:98:0.500:2	0/1:28,43:32:71:0.606:2	0/1:1,85:31:86:0.988:2
chr3	183755964	rs55684978	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,62:31:128:0.484:2	./.	./.
chr3	183756391	rs75040538	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,21:31:41:0.512:2	./.	./.	./.	./.	./.	./.	./.
chr3	183756637	rs56203055	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,95:31:193:0.492:2	./.	./.	./.	./.	./.	./.	./.
chr3	183756692	rs115389821	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,67:31:126:0.532:2	0/1:47,38:31:85:0.447:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	183756702	rs6789754	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:70,50:29:122:0.417:2	0/1:42,41:30:83:0.494:2	0/1:20,10:29:30:0.333:2	./.	0/1:90,85:29:175:0.486:2	0/1:2,157:29:159:0.987:2	0/1:3,125:30:130:0.977:2	0/1:2,119:29:121:0.983:2	0/1:92,67:30:161:0.421:2	0/1:84,50:30:134:0.373:2	0/1:0,98:29:98:1.00:2
chr3	183756742	rs55674402	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,66:30:140:0.471:2	0/1:70,44:30:114:0.386:2	0/1:7,97:29:104:0.933:2	./.	0/1:70,46:30:116:0.397:2	0/1:39,46:30:85:0.541:2
chr3	183772514	rs60179621	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,29:31:64:0.453:2	0/1:44,23:32:67:0.343:2	./.	./.	./.	./.
chr3	183774762	rs6766410	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:59,58:32:117:0.496:2	0/1:46,26:32:72:0.361:2	0/1:14,4:32:18:0.222:2	./.	0/1:80,88:31:168:0.524:2	0/1:87,55:30:142:0.387:2	./.	0/1:92,65:31:157:0.414:2	0/1:81,68:32:149:0.456:2	./.	0/1:63,50:32:113:0.442:2
chr3	183777725	rs139495425	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:33:90:0.044:2	./.	./.	./.	./.	./.
chr3	183778010	rs6807362	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,34:32:85:0.400:2	0/1:28,25:32:53:0.472:2	./.	0/1:61,49:32:110:0.445:2	0/1:56,48:31:104:0.462:2	0/1:50,58:32:108:0.537:2	./.	0/1:63,46:32:109:0.422:2	0/1:52,63:33:115:0.548:2	./.	0/1:39,33:32:72:0.458:2
chr3	183818416	rs7627615	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:31:77:1.00:2	0/1:0,35:31:37:1.00:2	0/1:6,4:29:10:0.400:2	0/1:41,32:31:73:0.438:2	0/1:28,40:31:68:0.588:2	0/1:1,73:30:74:0.986:2	0/1:33,28:30:61:0.459:2	0/1:55,46:31:101:0.455:2	0/1:35,29:30:64:0.453:2	./.	0/1:50,33:31:83:0.398:2
chr3	183823576	rs4912524	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,5:33:5:1.00:2	0/1:1,65:33:67:0.985:2	0/1:0,58:32:58:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,70:32:71:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,53:32:54:1.00:2	0/1:0,69:33:69:1.00:2
chr3	183824448	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:30:132:0.030:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	183854503	rs150531914	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,30:32:68:0.441:2	./.
chr3	183861243	rs843358	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,3:31:13:0.231:2	0/1:1,76:28:77:0.987:2	0/1:37,42:27:79:0.532:2	./.	0/1:40,40:29:80:0.500:2	./.	./.	./.	./.
chr3	183884394	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:33:182:0.022:2	./.	./.
chr3	183899832	rs8478	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,39:32:88:0.443:2	0/1:35,32:32:67:0.478:2	0/1:25,35:31:60:0.583:2	./.
chr3	183901279	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,6:32:194:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr3	183901281	rs2231224	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,71:31:196:0.362:2	0/1:83,95:31:178:0.534:2	0/1:57,80:31:137:0.584:2	./.
chr3	183904049	rs11539876	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,5:33:14:0.357:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	183907032	rs843344	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,66:33:148:0.449:2	0/1:53,29:32:82:0.354:2	0/1:6,10:31:16:0.625:2	0/1:0,163:32:163:1.00:2	0/1:82,54:31:136:0.397:2	0/1:103,83:32:186:0.446:2	0/1:97,81:32:178:0.455:2	0/1:96,92:32:188:0.489:2	0/1:108,81:33:189:0.429:2	0/1:110,61:33:171:0.357:2	0/1:114,82:32:196:0.418:2
chr3	183908761	rs7614381	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,18:32:54:0.333:2	0/1:34,24:33:58:0.414:2	0/1:26,8:32:34:0.235:2	./.
chr3	183908982	rs11706273	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:106,84:32:190:0.442:2	./.	./.	./.	./.	./.	./.
chr3	183910669	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:33:129:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	183911465	rs843338	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,64:30:134:0.478:2
chr3	183951067	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,42:30:57:0.737:2	./.	./.	./.	./.	./.
chr3	183951135	rs729377	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.
chr3	183951431	rs902417	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,5:32:8:0.625:2	0/1:42,60:31:102:0.588:2	./.	./.	./.	./.	0/1:38,48:31:86:0.558:2	0/1:40,30:31:70:0.429:2	./.
chr3	183953972	rs1709657	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,5:31:13:0.385:2	0/1:64,64:28:128:0.500:2	./.	./.	./.	./.	0/1:81,43:29:126:0.347:2	0/1:80,63:28:145:0.441:2	./.
chr3	183955109	rs843334	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,9:31:15:0.600:2	0/1:45,38:30:83:0.458:2	./.	./.	./.	./.	0/1:47,51:33:98:0.520:2	0/1:22,35:32:57:0.614:2	./.
chr3	183959508	rs28606531	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	183960347	rs372724502	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:33:171:0.023:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	183975365	rs7633387	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:30:86:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,119:30:119:1.00:2	0/1:0,155:30:155:1.00:2	0/1:0,144:30:144:1.00:2	0/1:0,159:30:159:1.00:2	0/1:0,111:30:111:1.00:2	0/1:0,157:31:157:1.00:2	0/1:0,95:31:95:1.00:2	0/1:0,98:30:98:1.00:2
chr3	183975444	rs74351089	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,53:30:109:0.486:2	0/1:29,22:29:51:0.431:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	183976103	rs11546878	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,58:32:133:0.436:2	0/1:5,143:32:148:0.966:2	./.	./.	./.	0/1:46,65:32:111:0.586:2	./.
chr3	183976108	rs902415	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,7:31:17:0.412:2	0/1:49,43:31:92:0.467:2	./.	0/1:153,4:32:157:0.025:2	./.	./.	./.	0/1:69,44:31:113:0.389:2	./.
chr3	183976241	rs6767237	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,46:31:82:0.561:2	./.	./.	./.	./.	./.	0/1:45,33:32:78:0.423:2	./.
chr3	183994291	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:34:94:0.043:2	./.	./.	./.
chr3	183994447	rs13063766	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,28:32:69:0.406:2	./.	./.	./.	./.	./.	./.
chr3	183996044	rs55920130	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,45:30:83:0.542:2	./.
chr3	183996068	rs3752904	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,56:32:57:0.982:2	0/1:0,42:32:42:1.00:2	./.	./.	0/1:38,36:31:74:0.486:2	0/1:3,74:32:77:0.961:2	0/1:0,72:32:72:1.00:2	0/1:0,122:32:122:1.00:2	0/1:0,72:33:72:1.00:2	0/1:43,32:32:75:0.427:2	0/1:40,27:33:67:0.403:2
chr3	184003357	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:31:152:0.026:2	./.	./.	./.
chr3	184019681	rs11545172	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,55:31:95:0.579:2	./.	./.
chr3	184020542	rs11545169	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,48:31:97:0.495:2	0/1:1,89:31:90:0.989:2	./.	./.	./.	0/1:46,47:31:93:0.505:2	./.
chr3	184025163	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:32:106:0.038:2	./.	./.	./.	./.
chr3	184025249	rs140661538	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,5:31:125:0.040:2	./.	./.	./.	./.
chr3	184025743	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:29:85:0.047:2	./.	./.	./.
chr3	184037533	rs13319149	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,111:29:112:0.991:2	0/1:1,74:29:75:0.987:2	0/1:0,20:29:20:1.00:2	0/1:0,152:29:152:1.00:2	0/1:1,114:29:115:0.991:2	0/1:1,173:29:174:0.994:2	0/1:0,133:29:133:1.00:2	0/1:0,161:29:161:1.00:2	0/1:0,131:30:131:1.00:2	0/1:0,125:29:125:1.00:2	0/1:0,131:28:131:1.00:2
chr3	184039666	rs2178403	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,26:31:27:0.963:2	0/1:0,21:32:21:1.00:2	0/1:2,5:34:7:0.714:2	0/1:23,11:30:34:0.324:2	0/1:18,16:31:34:0.471:2	0/1:1,43:31:44:0.977:2	0/1:0,47:32:47:1.00:2	0/1:2,44:31:46:0.957:2	0/1:0,34:33:34:1.00:2	0/1:0,26:32:26:1.00:2	0/1:16,11:32:27:0.407:2
chr3	184044709	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:32:115:0.035:2	./.	./.
chr3	184046470	rs2230571	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,24:33:43:0.558:2	0/1:13,18:32:31:0.581:2	0/1:6,6:32:12:0.500:2	0/1:28,33:31:61:0.541:2	./.	./.	./.	0/1:48,22:32:70:0.314:2	./.	0/1:30,24:32:54:0.444:2	./.
chr3	184070513	rs375390596	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,11:31:19:0.579:2	0/1:10,9:32:19:0.474:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	184071063	rs9820367	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:37,31:33:68:0.456:2	0/1:17,27:32:44:0.614:2	./.	0/1:55,29:33:84:0.345:2	0/1:48,47:33:95:0.495:2	0/1:34,38:33:72:0.528:2	0/1:45,36:33:81:0.444:2	0/1:23,29:32:52:0.558:2	./.	0/1:32,18:31:50:0.360:2	./.
chr3	184071984	rs115803480	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,63:32:131:0.481:2	0/1:39,40:31:79:0.506:2	./.	./.	./.	0/1:98,78:31:177:0.443:2	./.	./.	./.	./.	./.
chr3	184075047	rs2228291	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,7:32:13:0.538:2	0/1:9,6:32:15:0.400:2	./.	./.	0/1:0,24:33:24:1.00:2	0/1:15,16:30:31:0.516:2	0/1:0,31:33:31:1.00:2	0/1:15,18:32:33:0.545:2	0/1:0,31:33:31:1.00:2	./.	./.
chr3	184082931	rs11556518	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,155:33:155:1.00:2	./.
chr3	184082998	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:32:146:0.027:2
chr3	184090324	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2	./.	./.	./.	./.	./.
chr3	184094081	rs376159996	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:32:58:0.069:2	./.	./.	./.	./.	./.
chr3	184099050	rs34095724	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,34:30:78:0.436:2
chr3	184099342	rs3749228	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,13:26:13:1.00:2	./.
chr3	184099378	rs35929225	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,10:28:12:0.833:2	./.	0/1:9,3:33:12:0.250:2	0/1:8,10:32:18:0.556:2	0/1:0,17:32:17:1.00:2	./.	./.
chr3	184100483	rs77289593	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,21:29:31:0.677:2	0/1:4,10:29:14:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	184103903	rs16858780	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,16:33:33:0.485:2	./.	./.	./.	./.	./.	./.	0/1:0,133:33:133:1.00:2	0/1:67,55:33:122:0.451:2
chr3	184106493	rs2293606	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,59:29:59:1.00:2	./.
chr3	184289152	rs13069661	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,73:29:196:0.372:2	./.	0/1:104,79:30:184:0.432:2	0/1:1,182:29:183:0.995:2	0/1:107,81:29:188:0.431:2
chr3	184290303	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:30:104:0.039:2	./.
chr3	184290348	rs9862375	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:38,29:29:67:0.433:2	0/1:23,16:29:39:0.410:2	./.	./.	0/1:67,86:28:153:0.562:2	./.	0/1:71,60:28:131:0.458:2	0/1:86,56:29:142:0.394:2	./.	./.	./.
chr3	184290951	rs56337404	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,22:30:53:0.415:2	./.	./.	./.	./.	./.
chr3	184293695	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,7:21:99:0.071:2	./.	./.	./.
chr3	184293716	.	A	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:63,13:17:76:0.171:2	./.	./.	0/1:67,11:16:78:0.141:2	0/1:77,12:14:90:0.135:2	0/1:93,13:16:106:0.123:2	0/1:87,13:16:100:0.130:2	0/1:86,20:17:106:0.189:2	0/1:87,12:14:99:0.121:2	0/1:76,10:18:86:0.116:2	0/1:55,10:21:65:0.154:2
chr3	184293769	rs7652597	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,80:32:80:1.00:2	0/1:0,47:32:47:1.00:2	./.	0/1:0,103:32:104:1.00:2	0/1:60,52:31:112:0.464:2	0/1:1,125:32:126:0.992:2	0/1:0,132:32:132:1.00:2	0/1:2,117:32:119:0.983:2	./.	0/1:53,47:31:100:0.470:2	./.
chr3	184296269	rs114729369	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,14:28:35:0.400:2	./.
chr3	184297351	rs150037161	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,63:31:155:0.406:2	./.
chr3	184298663	rs11719912	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:37,24:32:61:0.393:2	0/1:28,29:32:57:0.509:2	./.	./.	0/1:80,44:32:124:0.355:2	0/1:78,54:32:132:0.409:2	0/1:5,134:32:139:0.964:2	0/1:77,44:32:121:0.364:2	./.	./.	./.
chr3	184299068	rs9881589	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:78,61:32:139:0.439:2	0/1:57,49:32:106:0.462:2	./.	0/1:99,85:32:184:0.462:2	./.	0/1:98,91:32:189:0.481:2	./.	./.	./.	0/1:87,82:33:169:0.485:2	./.
chr3	184299155	rs36034245	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,91:32:192:0.474:2	./.	./.	./.
chr3	184299167	rs1138510	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,167:33:169:0.988:2	0/1:0,108:33:108:1.00:2	./.	0/1:2,179:33:181:0.989:2	0/1:94,89:32:183:0.486:2	0/1:1,170:33:171:0.994:2	0/1:3,172:33:175:0.983:2	0/1:1,185:33:186:0.995:2	./.	0/1:79,50:32:129:0.388:2	./.
chr3	184428903	rs9872799	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,47:30:47:1.00:2	0/1:0,14:33:14:1.00:2	./.	0/1:0,50:31:50:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,41:32:41:1.00:2	0/1:1,48:31:49:0.980:2	0/1:38,21:32:59:0.356:2	0/1:38,40:30:78:0.513:2	0/1:0,38:32:38:1.00:2	./.
chr3	184429414	rs10937187	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,11:30:11:1.00:2	0/1:0,7:31:7:1.00:2	./.	0/1:0,14:29:14:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,16:27:16:1.00:2	0/1:2,11:30:13:0.846:2	0/1:7,12:30:19:0.632:2	0/1:10,7:30:17:0.412:2	0/1:1,12:30:13:0.923:2	./.
chr3	184429718	rs12011	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,8:33:8:1.00:2	0/1:0,4:32:4:1.00:2	./.	0/1:0,22:31:22:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,5:28:5:1.00:2	0/1:17,5:33:22:0.227:2	./.	0/1:0,4:31:4:1.00:2	./.
chr3	184429722	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:30:6:0.500:2	./.	./.
chr3	184550501	rs9830734	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,25:32:25:1.00:2	./.	./.	./.	0/1:56,61:32:117:0.521:2	0/1:57,77:32:134:0.575:2	0/1:82,69:33:151:0.457:2	./.	./.
chr3	184566883	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,6:32:172:0.035:2	./.	./.	./.	./.
chr3	184573555	rs6443999	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:33:9:0.556:2	./.	./.	./.	0/1:56,50:32:106:0.472:2	0/1:45,38:32:83:0.458:2	0/1:78,41:34:119:0.345:2	./.	0/1:51,51:33:102:0.500:2
chr3	184633247	rs4686879	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,101:33:101:1.00:2	0/1:0,50:33:50:1.00:2	0/1:6,3:32:9:0.333:2	0/1:0,76:33:76:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,84:32:84:1.00:2	0/1:31,34:33:65:0.523:2	0/1:51,45:33:96:0.469:2	0/1:64,78:34:142:0.549:2	0/1:0,77:33:77:1.00:2	0/1:52,60:33:112:0.536:2
chr3	184647413	rs4643688	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:33:69:1.00:2	0/1:1,37:32:38:0.974:2	0/1:0,5:32:5:1.00:2	0/1:0,56:33:56:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,76:34:76:1.00:2	0/1:1,46:33:47:0.979:2	0/1:46,36:33:82:0.439:2
chr3	184689486	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:119,4:31:123:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr3	184689529	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:31:66:0.061:2	./.
chr3	184700356	rs4572747	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,83:33:83:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,106:33:106:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,122:31:122:1.00:2
chr3	184700426	rs11555405	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,15:29:18:0.833:2	./.	./.	./.	0/1:67,49:30:117:0.422:2	0/1:105,68:30:173:0.393:2	0/1:78,72:31:150:0.480:2	./.	./.
chr3	184766301	rs3821750	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,34:31:79:0.430:2
chr3	184800793	rs113106000	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:29:15:0.533:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	184910078	rs55752621	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,20:30:41:0.488:2	./.	./.	./.	./.	./.
chr3	184910133	rs11919970	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:29:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	184911151	rs3732933	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:33:9:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	185146702	rs3732577	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,90:31:183:0.492:2	0/1:95,82:32:177:0.463:2
chr3	185229464	rs61730237	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,21:33:40:0.525:2	0/1:12,19:32:31:0.613:2	./.	./.	./.	0/1:1,36:32:37:0.973:2	0/1:12,16:33:28:0.571:2	0/1:0,34:32:34:1.00:2	./.	0/1:0,41:32:41:1.00:2	0/1:0,48:33:48:1.00:2
chr3	185236964	rs144288709	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,25:32:65:0.385:2	0/1:12,19:32:31:0.613:2	./.	./.	./.	0/1:52,20:31:72:0.278:2	./.	0/1:46,36:31:82:0.439:2	./.	./.	./.
chr3	185236973	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:34:55:0.073:2	./.
chr3	185307879	rs11924016	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:33:7:0.571:2	0/1:0,11:32:11:1.00:2	./.	./.	0/1:4,5:30:9:0.556:2	./.	./.	0/1:3,4:31:7:0.571:2	0/1:6,6:34:12:0.500:2	./.	./.
chr3	185331165	rs6762208	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:34,25:32:59:0.424:2	0/1:13,13:33:26:0.500:2	./.	./.	0/1:10,11:32:21:0.524:2	./.	./.	0/1:17,19:33:36:0.528:2	0/1:37,23:33:60:0.383:2	0/1:26,13:33:40:0.333:2	./.
chr3	185364904	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:31:157:0.025:2	./.	./.	./.	./.	./.
chr3	185367322	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	185393138	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,5:32:196:0.026:2
chr3	185404852	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:33:129:0.031:2	./.	./.	./.
chr3	185404874	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:30:138:0.029:2	./.	./.	./.
chr3	185414434	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	185970963	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,9:29:76:0.118:2	./.
chr3	185985570	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:31:80:0.050:2	./.	./.	./.
chr3	185990096	rs2193587	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,58:32:136:0.426:2	0/1:47,46:32:94:0.495:2	0/1:0,24:31:24:1.00:2	0/1:0,142:31:142:1.00:2	0/1:2,157:31:159:0.987:2	0/1:0,155:31:155:1.00:2	0/1:1,166:31:167:0.994:2	0/1:0,167:31:167:1.00:2	0/1:0,167:32:167:1.00:2	0/1:0,140:32:140:1.00:2	0/1:88,76:32:164:0.463:2
chr3	186006566	rs710443	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,34:30:76:0.447:2	0/1:24,15:31:39:0.385:2	./.	0/1:45,48:31:93:0.516:2	0/1:38,37:30:75:0.493:2	0/1:0,85:31:85:1.00:2	0/1:32,35:32:67:0.522:2	0/1:0,73:31:73:1.00:2	0/1:52,29:32:81:0.358:2	0/1:0,63:30:63:1.00:2	0/1:55,31:30:86:0.360:2
chr3	186006618	rs1004588	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,90:31:90:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,5:33:5:1.00:2	./.	./.	0/1:39,42:31:81:0.519:2	0/1:3,59:30:62:0.952:2	./.	0/1:28,36:31:64:0.563:2	0/1:40,30:29:70:0.429:2	0/1:51,32:30:83:0.386:2
chr3	186015283	rs3819860	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,19:33:46:0.413:2	0/1:23,8:30:31:0.258:2	0/1:25,19:33:44:0.432:2	0/1:25,9:32:34:0.265:2	0/1:2,33:32:35:0.943:2	0/1:38,22:33:60:0.367:2	./.	0/1:24,22:31:46:0.478:2
chr3	186015910	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:31:134:0.030:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	186274240	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:31:78:0.051:2	./.	./.	./.
chr3	186301703	rs8147	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,35:32:73:0.479:2	0/1:28,25:31:53:0.472:2	./.	0/1:29,16:33:45:0.356:2	0/1:2,55:32:57:0.965:2	0/1:36,31:34:67:0.463:2	./.	0/1:41,36:33:77:0.468:2
chr3	186330969	rs4831	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,21:32:44:0.477:2	0/1:20,20:32:40:0.500:2	0/1:20,18:32:38:0.474:2	0/1:29,4:31:33:0.121:2	0/1:2,54:32:56:0.964:2	0/1:25,37:33:62:0.597:2	./.	0/1:31,13:31:44:0.295:2
chr3	186337713	rs4917	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,36:28:37:0.973:2	0/1:0,25:28:25:1.00:2	0/1:0,12:29:12:1.00:2	0/1:38,29:29:67:0.433:2	0/1:1,37:28:38:0.974:2	0/1:0,36:29:36:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,41:28:41:1.00:2	0/1:0,50:30:50:1.00:2	0/1:25,26:29:51:0.510:2	0/1:0,60:29:60:1.00:2
chr3	186337717	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,13:31:50:0.260:2	./.	./.
chr3	186338382	rs4918	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:31:32:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,9:31:9:1.00:2	0/1:24,33:32:57:0.579:2	0/1:0,45:31:45:1.00:2	0/1:0,49:31:49:1.00:2	0/1:1,40:32:41:0.976:2	0/1:0,52:32:52:1.00:2	0/1:0,39:32:39:1.00:2	0/1:34,14:30:48:0.292:2	0/1:1,33:32:34:0.971:2
chr3	186338425	rs1071592	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:31:47:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,108:31:108:1.00:2	0/1:0,63:33:63:1.00:2	0/1:46,29:33:75:0.387:2	0/1:1,41:32:42:0.976:2
chr3	186338458	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,30:30:88:0.341:2	./.	./.	./.	./.
chr3	186358366	rs1047115	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,31:30:78:0.397:2	./.	./.	./.	./.	./.	./.	0/1:57,42:29:99:0.424:2
chr3	186360255	rs114780909	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,21:31:40:0.525:2	0/1:16,13:31:29:0.448:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	186369038	rs143617617	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,81:32:153:0.529:2	./.	./.	./.
chr3	186370142	rs142401278	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,7:29:27:0.259:2	./.	./.
chr3	186370333	rs1131364	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,46:31:51:0.902:2	0/1:1,24:31:25:0.960:2	./.	0/1:34,27:31:61:0.443:2	0/1:25,25:31:50:0.500:2	0/1:29,23:31:52:0.442:2	0/1:30,23:32:53:0.434:2	0/1:0,60:32:60:1.00:2	0/1:46,24:33:70:0.343:2	0/1:37,28:32:65:0.431:2	0/1:39,28:31:67:0.418:2
chr3	186370350	rs7999	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,32:33:52:0.615:2	./.	./.	0/1:30,30:34:60:0.500:2
chr3	186387780	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,4:33:75:0.053:2	./.	./.	./.	./.	./.	./.
chr3	186389559	rs10770	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,8:31:16:0.500:2	0/1:56,38:33:94:0.404:2	./.	0/1:50,32:33:82:0.390:2	./.	0/1:55,51:32:106:0.481:2	0/1:61,60:33:121:0.496:2	./.	./.
chr3	186390627	rs9898	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,56:32:57:0.982:2	0/1:0,33:31:33:1.00:2	0/1:3,7:33:10:0.700:2	0/1:31,27:31:58:0.466:2	0/1:37,18:31:55:0.327:2	0/1:44,30:33:74:0.405:2	0/1:37,33:33:70:0.471:2	0/1:0,63:33:63:1.00:2	0/1:40,27:34:67:0.403:2	0/1:31,25:32:56:0.446:2	0/1:39,53:33:92:0.576:2
chr3	186395113	rs2228243	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,77:30:78:0.987:2	0/1:0,43:29:43:1.00:2	./.	./.	0/1:41,54:29:95:0.568:2	./.	0/1:60,57:29:117:0.487:2	./.	./.	0/1:33,42:29:75:0.560:2	./.
chr3	186395180	rs7629680	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:29:102:1.00:2	0/1:0,33:28:33:1.00:2	0/1:0,13:29:13:1.00:2	0/1:1,114:29:115:0.991:2	0/1:0,129:29:129:1.00:2	0/1:0,91:29:91:1.00:2	0/1:1,138:30:139:0.993:2	0/1:0,118:29:118:1.00:2	0/1:0,104:30:104:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,83:30:83:1.00:2
chr3	186395436	rs1042445	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,13:32:17:0.765:2	0/1:65,58:31:123:0.472:2	./.	0/1:77,54:31:131:0.412:2	./.	0/1:81,69:32:150:0.460:2	0/1:75,77:33:152:0.507:2	./.	./.
chr3	186395572	rs1042464	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,117:31:120:0.975:2	0/1:0,73:32:73:1.00:2	0/1:9,11:31:20:0.550:2	0/1:72,56:31:130:0.438:2	0/1:66,59:31:125:0.472:2	0/1:81,60:31:141:0.426:2	0/1:65,70:31:135:0.519:2	0/1:2,154:31:156:0.987:2	0/1:103,92:32:195:0.472:2	0/1:56,73:31:129:0.566:2	0/1:101,82:32:184:0.448:2
chr3	186435370	rs1050274	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,61:32:61:1.00:2	0/1:1,23:30:24:0.958:2	./.	./.	0/1:20,24:31:44:0.545:2	./.	0/1:16,19:30:35:0.543:2	./.	./.	0/1:49,21:30:70:0.300:2	0/1:40,32:31:72:0.444:2
chr3	186437944	rs5029980	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:63,34:32:97:0.351:2	0/1:32,22:31:54:0.407:2	./.	./.	0/1:54,37:32:91:0.407:2	./.	./.	./.	./.	./.	./.
chr3	186440243	rs1469859	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,3:32:13:0.231:2	./.	./.	0/1:8,13:32:21:0.619:2	0/1:8,16:32:24:0.667:2	./.	0/1:20,16:33:36:0.444:2
chr3	186443018	rs1656922	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,34:30:70:0.486:2	0/1:22,20:28:42:0.476:2	0/1:0,8:29:8:1.00:2	0/1:39,54:29:93:0.581:2	0/1:0,40:28:40:1.00:2	0/1:50,33:29:83:0.398:2	./.	0/1:56,17:29:73:0.233:2	0/1:43,43:30:86:0.500:2	./.	0/1:48,48:29:96:0.500:2
chr3	186445052	rs2304456	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:31,21:33:52:0.404:2	0/1:13,17:33:30:0.567:2	./.	./.	./.	./.	0/1:27,24:32:51:0.471:2	./.	./.	0/1:29,24:33:53:0.453:2	./.
chr3	186459475	rs5030084	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,53:32:130:0.408:2	./.	./.	./.
chr3	186459646	rs5030085	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,27:32:69:0.391:2	./.	./.	./.
chr3	186459775	rs5030086	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,46:30:112:0.411:2	./.	./.	./.
chr3	186459927	rs710446	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:76,73:33:149:0.490:2	0/1:55,37:32:92:0.402:2	0/1:13,7:32:20:0.350:2	./.	0/1:69,69:32:138:0.500:2	./.	./.	0/1:0,153:33:153:1.00:2	0/1:85,83:33:168:0.494:2	./.	0/1:101,81:32:182:0.445:2
chr3	186460110	rs5030087	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,10:33:16:0.625:2	./.	./.	./.
chr3	186507757	rs1047148	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,21:31:39:0.538:2	./.	./.	./.	0/1:28,17:33:45:0.378:2	./.	./.
chr3	186509517	rs187868	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,17:33:50:0.340:2	0/1:19,21:32:40:0.525:2	./.	0/1:0,43:32:43:1.00:2	0/1:20,6:29:26:0.231:2	0/1:20,15:32:35:0.429:2	0/1:21,17:33:38:0.447:2	./.	0/1:27,27:33:54:0.500:2	0/1:24,21:34:45:0.467:2	0/1:0,48:32:48:1.00:2
chr3	186570892	rs2241766	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,5:32:18:0.278:2	./.	./.	0/1:118,75:32:193:0.389:2	0/1:94,49:33:143:0.343:2	0/1:7,142:32:149:0.953:2	./.	./.	./.
chr3	186917472	rs201233932	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,9:33:79:0.114:2	./.	./.	./.	./.
chr3	186917504	.	G	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:37,8:29:45:0.178:2	0/1:28,10:32:38:0.263:2	./.	0/1:89,20:31:109:0.183:2	0/1:96,22:31:118:0.186:2	0/1:101,22:31:123:0.179:2	0/1:81,11:32:92:0.120:2	0/1:110,9:31:119:0.076:2	0/1:54,19:31:73:0.260:2	0/1:66,5:29:71:0.070:2	0/1:45,15:31:60:0.250:2
chr3	186917751	rs6764714	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,171:28:173:0.988:2	0/1:0,103:27:103:1.00:2	0/1:0,27:30:27:1.00:2	0/1:91,98:28:189:0.519:2	0/1:101,93:28:194:0.479:2	0/1:2,179:28:183:0.989:2	0/1:91,102:28:193:0.528:2	0/1:114,79:27:193:0.409:2	0/1:92,95:28:187:0.508:2	0/1:84,82:29:167:0.494:2	0/1:91,96:27:187:0.513:2
chr3	186938030	rs35472527	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,19:31:28:0.679:2	./.	./.	./.	./.	./.	./.
chr3	186953808	rs850312	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,16:30:38:0.421:2	0/1:9,17:31:26:0.654:2	./.	0/1:36,41:30:77:0.532:2	0/1:58,47:30:105:0.448:2	0/1:0,69:30:69:1.00:2	./.	0/1:47,39:30:86:0.453:2	./.	./.	./.
chr3	186954285	rs710452	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:31:42:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,53:30:53:1.00:2	0/1:1,64:29:65:0.985:2	0/1:0,64:29:64:1.00:2	0/1:0,51:29:51:1.00:2	0/1:0,72:29:72:1.00:2	0/1:0,61:29:61:1.00:2	0/1:1,41:29:42:0.976:2	0/1:0,52:29:52:1.00:2
chr3	186954324	rs3774268	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,38:31:96:0.396:2	./.	0/1:54,44:31:98:0.449:2	0/1:45,15:31:60:0.250:2	0/1:2,57:30:59:0.966:2
chr3	186959295	rs28945068	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,45:32:84:0.536:2	./.	./.	./.
chr3	186961357	rs141985299	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,88:33:153:0.575:2	./.	./.
chr3	187009372	rs16861896	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,78:30:78:1.00:2	./.	./.	./.	./.	0/1:52,33:31:85:0.388:2	./.
chr3	187009412	rs72549254	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,99:31:99:1.00:2	./.	./.	./.	./.	0/1:49,39:31:89:0.443:2	./.
chr3	187088612	rs33927333	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:77,75:33:152:0.493:2	0/1:35,42:33:77:0.545:2	0/1:7,5:33:12:0.417:2	./.	./.	./.	0/1:105,86:32:191:0.450:2	./.	./.	./.	./.
chr3	187088656	rs1047584	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,67:29:131:0.511:2	./.	0/1:0,143:30:143:1.00:2	./.	0/1:98,72:30:170:0.424:2	./.	./.	./.
chr3	187088812	rs3821812	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,27:33:60:0.450:2	0/1:27,22:32:49:0.449:2	./.	0/1:48,21:32:69:0.304:2	0/1:24,21:31:45:0.467:2	./.	./.	0/1:37,38:32:75:0.507:2	0/1:0,71:32:71:1.00:2	0/1:37,28:32:65:0.431:2	./.
chr3	187088903	rs1533595	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,21:31:55:0.382:2	0/1:24,14:32:38:0.368:2	./.	0/1:42,28:30:70:0.400:2	0/1:27,23:30:50:0.460:2	./.	./.	0/1:32,37:29:69:0.536:2	0/1:0,53:32:53:1.00:2	0/1:20,31:31:51:0.608:2	./.
chr3	187088923	rs35224605	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,32:31:62:0.516:2	./.	./.	./.	./.	./.	./.	./.
chr3	187088926	rs1533594	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,21:30:49:0.429:2	0/1:18,13:31:31:0.419:2	./.	0/1:2,57:30:59:0.966:2	0/1:0,38:30:38:1.00:2	0/1:0,67:30:67:1.00:2	0/1:20,37:31:57:0.649:2	0/1:1,57:30:58:0.983:2	0/1:0,47:32:47:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,46:31:46:1.00:2
chr3	187089031	rs1003995	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,11:31:20:0.550:2	0/1:2,6:29:8:0.750:2	./.	0/1:8,7:32:15:0.467:2	0/1:4,4:29:8:0.500:2	./.	./.	0/1:6,5:28:11:0.455:2	0/1:0,19:32:19:1.00:2	0/1:11,9:31:20:0.450:2	./.
chr3	187387022	rs33934967	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,26:33:53:0.491:2	./.	./.
chr3	187416634	rs1973791	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,76:32:80:0.950:2	0/1:6,37:32:43:0.860:2	0/1:13,4:31:17:0.235:2	0/1:25,84:30:109:0.771:2	0/1:28,138:31:166:0.831:2	0/1:24,110:30:134:0.821:2	0/1:103,71:31:174:0.408:2	0/1:108,62:31:170:0.365:2	0/1:10,96:32:106:0.906:2	0/1:52,24:30:76:0.316:2	0/1:13,45:31:58:0.776:2
chr3	187416666	rs11927120	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,11:32:16:0.688:2	./.	./.	./.	0/1:71,41:32:112:0.366:2	./.	./.	./.	./.
chr3	187416719	rs11707167	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,35:31:38:0.921:2	0/1:1,10:30:11:0.909:2	0/1:6,3:33:9:0.333:2	0/1:1,36:29:37:0.973:2	0/1:2,50:30:52:0.962:2	0/1:2,50:30:52:0.962:2	0/1:35,9:31:44:0.205:2	0/1:35,18:29:53:0.340:2	0/1:1,50:31:51:0.980:2	0/1:26,17:32:43:0.395:2	0/1:5,28:30:33:0.848:2
chr3	187419816	rs61754877	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,5:31:14:0.357:2	./.	./.	./.	0/1:113,72:33:186:0.389:2	./.	./.	./.	./.
chr3	187443314	rs61732778	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:31:6:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	187446211	rs2229362	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,76:31:148:0.514:2	./.	0/1:54,43:31:97:0.443:2	./.
chr3	187447032	rs1056932	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,87:31:88:0.989:2	0/1:0,71:31:71:1.00:2	./.	0/1:1,116:30:117:0.991:2	0/1:1,153:30:154:0.994:2	0/1:2,138:30:140:0.986:2	0/1:0,116:31:116:1.00:2	0/1:83,70:31:153:0.458:2	0/1:2,113:32:115:0.983:2	0/1:54,59:31:113:0.522:2	0/1:0,129:31:129:1.00:2
chr3	187447701	rs61752081	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,27:29:58:0.466:2	./.	./.	./.
chr3	188242513	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,4:31:64:0.063:2	./.	./.	./.	./.	./.	./.
chr3	188327461	rs1059380	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,32:30:32:1.00:2	0/1:16,18:30:34:0.529:2	./.	0/1:11,12:33:23:0.522:2	0/1:0,56:32:56:1.00:2	0/1:21,28:32:49:0.571:2	0/1:0,48:31:48:1.00:2	0/1:26,19:31:45:0.422:2
chr3	188327555	rs7645635	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,24:32:44:0.545:2	./.
chr3	188477936	rs185638183	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,91:31:185:0.492:2	./.	./.	./.	./.
chr3	188590446	rs1136644	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,60:31:129:0.465:2	0/1:42,44:32:86:0.512:2	0/1:12,6:33:18:0.333:2	0/1:0,117:32:117:1.00:2	./.	0/1:94,61:31:155:0.394:2	0/1:96,58:32:154:0.377:2	0/1:6,131:32:137:0.956:2	0/1:105,73:33:178:0.410:2	0/1:85,49:31:134:0.366:2	0/1:82,74:31:156:0.474:2
chr3	189547735	rs75715827	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,27:32:41:0.659:2	./.	./.	./.	0/1:25,29:32:54:0.537:2
chr3	189582028	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,47:33:79:0.595:2	./.	./.	./.	./.
chr3	189584501	rs121908849	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:33:196:0.020:2
chr3	189584563	rs33979049	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,55:30:124:0.444:2	./.	./.	./.	0/1:41,56:31:97:0.577:2
chr3	189586444	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,2:35:5:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	189607152	rs148076109	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,82:32:152:0.539:2	./.	./.
chr3	189608665	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:32:50:0.080:2	./.
chr3	189705442	rs34558237	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,52:32:115:0.452:2	./.	./.	./.	./.	./.
chr3	189712010	rs1719600	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:12,17:31:29:0.586:2	./.	./.	./.	./.	./.	0/1:1,15:32:16:0.938:2	./.	./.	./.	0/1:30,10:32:40:0.250:2
chr3	189713100	rs34128856	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,61:29:139:0.442:2	./.	./.	./.	./.	./.
chr3	189713205	rs9821880	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,29:33:54:0.537:2	0/1:22,8:31:30:0.267:2	./.	0/1:0,67:33:67:1.00:2	0/1:0,72:32:72:1.00:2	./.	./.	./.	0/1:41,29:34:70:0.414:2	0/1:36,29:32:65:0.446:2	./.
chr3	190030680	rs9869263	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:29:62:1.00:2	0/1:0,36:28:36:1.00:2	0/1:17,3:31:20:0.150:2	0/1:0,75:28:75:1.00:2	0/1:0,101:28:101:1.00:2	0/1:1,92:28:93:0.989:2	0/1:63,39:27:102:0.382:2	0/1:0,123:28:123:1.00:2	0/1:0,95:29:95:1.00:2	0/1:0,78:28:78:1.00:2	0/1:0,73:26:73:1.00:2
chr3	190030683	rs56271702	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,3:32:20:0.150:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	190106074	rs3214506	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:97,93:32:190:0.489:2	0/1:53,54:32:107:0.505:2	./.	0/1:106,87:32:193:0.451:2	./.	./.	./.	./.	0/1:0,186:33:186:1.00:2	0/1:91,75:32:167:0.452:2	0/1:99,87:32:186:0.468:2
chr3	190106106	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.	./.	./.
chr3	190158168	rs35161724	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,15:32:38:0.395:2	./.	./.	./.	./.
chr3	190167533	rs10513852	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,37:30:65:0.569:2	./.	./.	./.	./.
chr3	190338102	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,19:33:39:0.487:2	./.	./.
chr3	190363594	rs34879831	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,80:31:82:0.988:2	./.	./.	0/1:31,31:32:62:0.500:2	./.	0/1:56,47:32:103:0.456:2	./.	0/1:72,34:32:106:0.321:2
chr3	190575614	rs184563768	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,79:31:194:0.407:2	./.	./.	./.	./.	./.	./.	./.
chr3	190578566	rs13075089	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,84:32:84:1.00:2	0/1:0,48:31:48:1.00:2	0/1:4,5:30:9:0.556:2	./.	0/1:45,31:31:76:0.408:2	0/1:57,45:31:102:0.441:2	0/1:49,42:32:91:0.462:2	0/1:71,71:31:142:0.500:2	0/1:56,57:32:113:0.504:2	0/1:38,36:32:74:0.486:2	0/1:58,60:31:118:0.508:2
chr3	190936577	rs34687554	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,22:30:61:0.361:2	./.	./.	./.	./.	./.	./.	./.
chr3	190999917	rs6788319	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,41:32:115:0.357:2	0/1:48,26:32:74:0.351:2	0/1:11,5:31:16:0.313:2	0/1:1,90:31:91:0.989:2	0/1:0,76:31:76:1.00:2	0/1:90,53:31:143:0.371:2	0/1:2,99:32:101:0.980:2	0/1:63,53:30:116:0.457:2	./.	0/1:0,116:32:116:1.00:2	0/1:100,77:32:177:0.435:2
chr3	191047532	rs9847278	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,28:32:61:0.459:2	0/1:0,68:31:68:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,49:32:49:1.00:2	./.	0/1:30,33:33:63:0.524:2	0/1:20,26:30:46:0.565:2	0/1:0,44:29:44:1.00:2
chr3	191074873	rs188384	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,53:33:111:0.477:2	0/1:0,77:32:77:1.00:2	0/1:1,69:32:70:0.986:2	0/1:0,80:32:80:1.00:2	./.	0/1:50,51:33:101:0.505:2	0/1:51,47:32:98:0.480:2	0/1:0,119:33:119:1.00:2
chr3	191074929	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:33:167:0.024:2	./.	./.	./.	./.
chr3	191075902	rs11542549	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,52:31:107:0.486:2	0/1:3,116:31:119:0.975:2	0/1:37,54:31:91:0.593:2	0/1:2,128:32:130:0.985:2	./.	0/1:46,70:32:116:0.603:2	0/1:55,38:31:93:0.409:2	0/1:0,107:32:107:1.00:2
chr3	191093053	rs2028572	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,82:33:162:0.506:2	0/1:1,134:32:135:0.993:2	0/1:81,72:32:153:0.471:2	0/1:1,158:32:159:0.994:2	./.	0/1:90,64:33:154:0.416:2	0/1:81,67:32:148:0.453:2	0/1:0,151:32:151:1.00:2
chr3	191093175	rs2028574	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,16:31:38:0.421:2	0/1:0,16:31:16:1.00:2	0/1:23,17:30:40:0.425:2	0/1:1,48:31:49:0.980:2	./.	0/1:30,29:32:59:0.492:2	0/1:24,23:32:47:0.489:2	0/1:0,40:32:40:1.00:2
chr3	191093310	rs4677728	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,18:34:65:0.277:2	0/1:1,76:32:77:0.987:2	0/1:47,25:34:72:0.347:2	0/1:0,72:33:72:1.00:2	./.	0/1:36,29:35:65:0.446:2	0/1:28,20:33:48:0.417:2	0/1:0,48:34:48:1.00:2
chr3	191097966	rs293813	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,40:29:57:0.702:2	0/1:0,54:29:54:1.00:2	0/1:3,44:29:47:0.936:2	0/1:1,45:29:46:0.978:2	./.	0/1:25,32:29:57:0.561:2	0/1:25,19:31:44:0.432:2	0/1:0,67:28:67:1.00:2
chr3	191098539	rs1474188	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,8:31:10:0.800:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	191100561	rs364519	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,88:32:198:0.444:2	0/1:1,135:32:136:0.993:2	0/1:6,189:31:195:0.969:2	0/1:3,147:32:150:0.980:2	./.	0/1:99,94:33:193:0.487:2	0/1:98,98:33:196:0.500:2	0/1:0,191:32:192:1.00:2
chr3	191179129	rs200714149	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,13:19:94:0.138:2	./.	0/1:11,5:23:16:0.313:2	0/1:65,28:19:93:0.301:2	0/1:69,19:16:88:0.216:2	0/1:79,35:19:114:0.307:2	0/1:79,30:19:109:0.275:2	0/1:67,26:17:93:0.280:2	0/1:70,20:12:90:0.222:2	0/1:65,20:24:85:0.235:2	0/1:67,16:20:83:0.193:2
chr3	191179193	rs293833	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,36:30:80:0.450:2	0/1:24,20:29:44:0.455:2	./.	0/1:1,78:30:79:0.987:2	0/1:3,85:30:88:0.966:2	0/1:55,37:30:92:0.402:2	0/1:49,57:30:106:0.538:2	0/1:1,81:30:82:0.988:2	./.	0/1:1,71:31:72:0.986:2	0/1:34,50:31:84:0.595:2
chr3	191888350	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:32:156:0.026:2
chr3	192516430	rs3732388	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,10:33:41:0.244:2	0/1:11,9:32:20:0.450:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	192517156	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:32:143:0.028:2	./.	./.
chr3	192992987	rs200117973	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,24:31:73:0.329:2	./.	./.	./.	./.
chr3	192994543	rs2271791	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,80:33:83:0.964:2	0/1:0,37:32:37:1.00:2	./.	./.	./.	./.	0/1:26,26:33:52:0.500:2	0/1:35,52:33:87:0.598:2
chr3	193002717	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,6:32:62:0.097:2	./.	./.	./.	./.	./.
chr3	193031926	rs2280268	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,28:32:56:0.500:2	0/1:20,14:33:34:0.412:2	0/1:0,5:33:5:1.00:2	0/1:1,86:31:87:0.989:2	0/1:0,54:31:54:1.00:2	0/1:31,36:31:67:0.537:2	./.	./.	0/1:53,53:32:106:0.500:2	0/1:0,56:32:56:1.00:2	0/1:58,40:32:98:0.408:2
chr3	193036783	rs73888252	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,26:31:52:0.500:2	0/1:47,13:32:60:0.217:2	./.	./.	0/1:37,25:32:62:0.403:2
chr3	193036794	rs6788770	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,24:32:55:0.436:2	0/1:27,8:32:35:0.229:2	0/1:0,3:34:3:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,53:32:53:1.00:2	0/1:51,15:32:66:0.227:2	0/1:43,43:33:86:0.500:2	0/1:0,67:33:67:1.00:2	0/1:0,65:32:65:1.00:2
chr3	193039597	rs61753889	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:31:10:0.300:2	./.	./.	0/1:36,24:31:60:0.400:2	0/1:38,36:31:74:0.486:2	./.	./.	./.	./.
chr3	193040295	rs144890796	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,45:32:100:0.450:2
chr3	193042718	rs140058809	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,52:33:102:0.510:2	./.	./.	./.	./.
chr3	193042732	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,6:25:72:0.083:2	./.	./.	./.	./.	./.	./.
chr3	193042776	rs11926955	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,22:27:54:0.407:2	0/1:18,19:27:37:0.514:2	0/1:0,3:28:3:1.00:2	0/1:0,49:25:49:1.00:2	0/1:0,43:26:43:1.00:2	0/1:0,45:27:45:1.00:2	0/1:0,42:26:42:1.00:2	0/1:34,37:26:71:0.521:2	0/1:27,31:28:58:0.534:2	0/1:0,37:26:37:1.00:2	0/1:0,54:26:54:1.00:2
chr3	193080344	rs12636830	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:78,63:31:141:0.447:2	0/1:45,33:31:78:0.423:2	0/1:0,28:30:28:1.00:2	./.	0/1:48,66:30:114:0.579:2	0/1:2,133:30:135:0.985:2	./.	0/1:104,69:30:174:0.399:2	0/1:75,66:31:141:0.468:2	0/1:79,65:31:144:0.451:2	0/1:88,60:31:148:0.405:2
chr3	193080414	rs6797429	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:60,63:34:123:0.512:2	0/1:34,35:32:69:0.507:2	./.	0/1:1,127:33:129:0.992:2	0/1:80,55:32:135:0.407:2	./.	0/1:88,67:33:155:0.432:2	0/1:72,73:33:145:0.503:2	0/1:69,54:33:123:0.439:2	0/1:72,58:33:130:0.446:2	0/1:53,60:33:113:0.531:2
chr3	193081122	rs12637558	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:16,25:31:41:0.610:2	0/1:12,11:31:23:0.478:2	0/1:1,5:29:6:0.833:2	./.	0/1:12,11:30:23:0.478:2	0/1:0,40:30:40:1.00:2	./.	0/1:18,15:29:33:0.455:2	0/1:45,25:31:70:0.357:2	0/1:23,24:30:47:0.511:2	0/1:43,30:30:73:0.411:2
chr3	193096529	rs4687419	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:0,40:31:40:1.00:2	./.	0/1:0,46:32:46:1.00:2	0/1:26,22:32:48:0.458:2	0/1:43,53:31:97:0.552:2	0/1:42,19:32:61:0.311:2	0/1:31,30:31:61:0.492:2	0/1:0,91:32:91:1.00:2	0/1:2,60:31:62:0.968:2	0/1:34,20:32:54:0.370:2
chr3	193171979	rs35424709	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,44:31:91:0.484:2	0/1:37,19:30:56:0.339:2	./.	./.	./.	./.	./.	./.
chr3	193180592	rs59451116	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:30,18:32:48:0.375:2	0/1:22,13:32:35:0.371:2	./.	./.	0/1:4,39:31:43:0.907:2	./.	0/1:26,21:32:47:0.447:2	./.	./.	0/1:32,22:32:54:0.407:2	0/1:47,20:32:67:0.299:2
chr3	193183817	rs3796181	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,30:28:66:0.455:2	0/1:11,24:27:35:0.686:2	0/1:7,3:29:10:0.300:2	0/1:39,24:29:63:0.381:2	0/1:0,47:28:47:1.00:2	0/1:38,26:28:64:0.406:2	0/1:21,36:28:58:0.632:2	./.	0/1:40,31:29:71:0.437:2	0/1:35,22:28:57:0.386:2	0/1:35,29:27:64:0.453:2
chr3	193209140	rs181256207	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,4:31:10:0.400:2	./.	./.	./.	./.	./.	./.
chr3	193209178	rs6788448	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,12:31:22:0.545:2	0/1:11,15:32:26:0.577:2	./.	./.	0/1:4,6:31:10:0.600:2	0/1:23,22:32:45:0.489:2	0/1:8,8:31:16:0.500:2	./.	0/1:23,12:33:35:0.343:2	0/1:17,15:32:32:0.469:2	0/1:0,28:32:28:1.00:2
chr3	193210768	rs2130407	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:36,30:33:67:0.455:2	0/1:20,20:33:40:0.500:2	0/1:3,3:32:6:0.500:2	./.	0/1:34,22:32:56:0.393:2	0/1:35,28:32:63:0.444:2	0/1:49,28:32:77:0.364:2	./.	0/1:37,47:33:84:0.560:2	0/1:31,26:33:57:0.456:2	0/1:3,113:33:116:0.974:2
chr3	193332522	rs75414918	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,45:31:107:0.421:2	./.	./.	./.	./.	./.	./.
chr3	193334991	rs7624750	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,90:32:90:1.00:2	0/1:31,22:32:53:0.415:2	0/1:0,86:31:86:1.00:2	0/1:37,15:31:52:0.288:2	./.	0/1:92,36:33:128:0.281:2	./.	./.
chr3	193355074	rs166850	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,104:30:104:1.00:2	0/1:0,65:29:65:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,151:30:151:1.00:2	0/1:0,106:29:106:1.00:2	0/1:0,148:29:148:1.00:2	0/1:0,141:29:141:1.00:2	0/1:0,172:30:172:1.00:2	0/1:97,72:30:169:0.426:2	0/1:0,121:30:121:1.00:2	0/1:0,170:29:171:1.00:2
chr3	193361198	rs149752576	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,28:30:63:0.444:2	./.	./.	./.	./.	./.	./.
chr3	193365939	rs9831772	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,14:31:38:0.368:2	./.	./.	./.	./.	./.	./.	./.
chr3	193374964	rs9851685	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,39:30:39:1.00:2	0/1:21,14:28:35:0.400:2	0/1:3,31:30:34:0.912:2	0/1:25,12:31:37:0.324:2	./.	0/1:23,25:30:48:0.521:2	./.	./.
chr3	193377266	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:33:49:0.082:2	./.
chr3	193385059	rs117475774	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,31:32:62:0.500:2	./.	./.	./.	./.
chr3	193386122	rs147155536	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,24:31:61:0.393:2	./.	./.	./.	./.	./.	./.
chr3	193386239	rs12494482	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,147:32:152:0.967:2	0/1:116,61:32:177:0.345:2	0/1:0,136:32:136:1.00:2	0/1:84,73:32:157:0.465:2	./.	0/1:66,52:33:118:0.441:2	./.	./.
chr3	193386379	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,8:17:61:0.131:2	./.	./.	./.	./.	0/1:74,9:15:84:0.108:2	./.	./.	./.	./.	./.
chr3	194061826	rs11711157	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,14:31:14:1.00:2	./.	0/1:59,41:30:100:0.410:2	0/1:0,70:31:70:1.00:2	0/1:53,53:31:106:0.500:2	0/1:63,39:31:102:0.382:2	./.	0/1:28,16:31:44:0.364:2	./.
chr3	194061906	rs4974538	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:33:44:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,7:30:7:1.00:2	0/1:49,48:32:97:0.495:2	0/1:0,89:31:89:1.00:2	0/1:0,60:29:60:1.00:2	0/1:62,47:29:109:0.431:2	0/1:52,39:28:91:0.429:2	0/1:27,36:29:63:0.571:2	0/1:39,12:32:51:0.235:2	0/1:22,27:33:49:0.551:2
chr3	194061907	rs4974539	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,44:32:44:1.00:2	0/1:0,32:32:32:1.00:2	./.	0/1:51,46:31:97:0.474:2	0/1:37,54:31:91:0.593:2	./.	./.	./.	./.	./.	0/1:22,27:31:49:0.551:2
chr3	194062519	rs3732477	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:32:7:1.00:2	./.	0/1:66,73:31:139:0.525:2	0/1:0,80:31:80:1.00:2	0/1:54,55:30:109:0.505:2	0/1:58,61:31:119:0.513:2	./.	0/1:39,31:31:70:0.443:2	./.
chr3	194062565	rs3732476	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:31:80:1.00:2	0/1:2,41:32:43:0.953:2	0/1:0,7:31:7:1.00:2	0/1:60,60:31:120:0.500:2	0/1:2,141:31:143:0.986:2	0/1:0,103:30:103:1.00:2	0/1:64,64:31:128:0.500:2	0/1:63,64:31:127:0.504:2	./.	0/1:36,38:31:74:0.514:2	0/1:37,48:31:85:0.565:2
chr3	194062668	rs201544096	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,6:21:59:0.102:2
chr3	194063153	rs3732474	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,71:33:71:1.00:2	0/1:0,46:32:46:1.00:2	./.	0/1:44,35:32:79:0.443:2	0/1:42,38:31:80:0.475:2	./.	./.	./.	./.	./.	0/1:34,45:32:79:0.570:2
chr3	194063300	rs62288099	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:28:76:1.00:2	0/1:0,49:28:49:1.00:2	0/1:0,10:29:10:1.00:2	0/1:45,40:27:85:0.471:2	0/1:0,120:27:120:1.00:2	0/1:0,128:28:128:1.00:2	0/1:48,60:27:108:0.556:2	0/1:72,48:27:120:0.400:2	0/1:53,73:28:126:0.579:2	0/1:48,37:28:85:0.435:2	0/1:54,58:28:112:0.518:2
chr3	194080033	rs73081778	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:31:7:0.714:2	./.	./.	./.	0/1:47,58:31:105:0.552:2	./.	./.	./.	./.
chr3	194080336	rs4974533	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,17:31:32:0.531:2	0/1:82,101:33:183:0.552:2	./.	./.	0/1:106,90:32:196:0.459:2	0/1:86,95:32:181:0.525:2	./.	./.	0/1:78,94:33:172:0.547:2
chr3	194080648	rs9682540	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,10:31:16:0.625:2	0/1:34,48:31:82:0.585:2	./.	./.	0/1:76,79:31:155:0.510:2	0/1:71,72:31:143:0.503:2	./.	./.	0/1:43,54:30:97:0.557:2
chr3	194080696	rs9682541	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,60:31:119:0.504:2	./.	./.	./.	0/1:90,101:31:191:0.529:2	./.	./.	0/1:48,68:31:116:0.586:2
chr3	194080916	rs13070515	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,25:32:60:0.417:2	./.	./.	./.	0/1:44,36:31:80:0.450:2	./.	./.	0/1:53,48:32:101:0.475:2
chr3	194080983	rs13060627	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,21:31:33:0.636:2	0/1:83,93:31:176:0.528:2	./.	./.	0/1:70,128:31:198:0.646:2	0/1:90,105:31:196:0.538:2	./.	./.	0/1:96,98:32:194:0.505:2
chr3	194081089	rs11713861	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,15:29:24:0.625:2	0/1:55,52:30:107:0.486:2	./.	./.	0/1:42,48:30:90:0.533:2	0/1:59,63:30:122:0.516:2	./.	./.	0/1:64,62:30:127:0.492:2
chr3	194081179	rs11715737	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,26:30:59:0.441:2	./.	./.	./.	0/1:24,40:31:64:0.625:2	./.	./.	0/1:44,39:31:83:0.470:2
chr3	194081392	rs923936	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,57:31:133:0.429:2	./.	./.	./.	0/1:56,58:31:114:0.509:2	./.	./.	0/1:57,54:31:111:0.486:2
chr3	194081635	rs923935	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,9:30:11:0.818:2	0/1:34,23:27:57:0.404:2	./.	./.	0/1:37,18:24:55:0.327:2	0/1:39,35:28:74:0.473:2	./.	./.	0/1:24,20:27:44:0.455:2
chr3	194081692	rs13090956	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,17:30:40:0.425:2	./.	./.	./.	./.	./.
chr3	194117491	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.	./.
chr3	194117754	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,4:28:28:0.143:2	./.	./.	./.
chr3	194118565	rs71316299	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,12:33:34:0.353:2	./.	./.	./.	./.
chr3	194118874	rs1223989	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,12:31:12:1.00:2	0/1:0,10:32:10:1.00:2	./.	0/1:0,9:29:9:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,5:29:5:1.00:2
chr3	194147859	rs199767870	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,25:32:49:0.510:2	./.	./.	./.	./.	./.
chr3	194168663	rs187365649	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,6:32:18:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	194169323	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,4:29:83:0.048:2	./.	./.	./.	./.	./.	./.
chr3	194181448	rs75156964	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:43,6:23:49:0.122:2	./.	./.	./.	./.	./.	./.	0/1:61,16:18:77:0.208:2	0/1:62,13:14:75:0.173:2	0/1:48,10:25:58:0.172:2	0/1:55,9:24:64:0.141:2
chr3	194313832	rs1773184	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:29:32:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,25:29:25:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,34:28:34:1.00:2	0/1:0,58:30:58:1.00:2	0/1:15,11:26:26:0.423:2	0/1:30,23:29:53:0.434:2
chr3	194325058	rs61739645	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.	./.	0/1:47,69:32:117:0.595:2	./.	./.	./.	./.	./.
chr3	194337901	rs922282	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,53:28:54:0.981:2	0/1:0,34:29:34:1.00:2	0/1:2,8:28:10:0.800:2	./.	0/1:0,42:28:43:1.00:2	0/1:0,75:28:75:1.00:2	0/1:35,26:29:61:0.426:2	0/1:53,37:29:90:0.411:2	0/1:48,31:28:79:0.392:2	./.	0/1:28,15:28:43:0.349:2
chr3	194349178	rs1563970	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,14:32:14:1.00:2	./.	0/1:96,60:31:156:0.385:2	0/1:74,72:31:146:0.493:2	./.	0/1:75,73:32:148:0.493:2	0/1:72,80:32:152:0.526:2	./.	0/1:77,75:31:153:0.493:2
chr3	194353875	rs1675955	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,34:31:34:1.00:2	0/1:0,18:31:18:1.00:2	./.	./.	0/1:44,24:29:68:0.353:2	0/1:24,36:29:60:0.600:2	0/1:30,14:30:44:0.318:2	0/1:23,33:30:56:0.589:2	0/1:10,24:31:34:0.706:2	./.	0/1:0,22:29:22:1.00:2
chr3	194362923	rs201450171	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,45:33:91:0.495:2	./.	./.
chr3	194373464	rs35480846	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,50:31:117:0.427:2
chr3	194373768	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:33:190:0.021:2	./.	./.
chr3	194373832	rs1675953	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,98:33:98:1.00:2	0/1:0,79:33:79:1.00:2	0/1:7,5:34:12:0.417:2	./.	0/1:52,31:33:83:0.373:2	0/1:89,50:32:139:0.360:2	0/1:65,36:33:101:0.356:2	0/1:1,115:32:116:0.991:2	0/1:0,122:33:122:1.00:2	0/1:47,43:33:90:0.478:2	0/1:85,76:33:161:0.472:2
chr3	194373833	rs1705991	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,97:33:98:0.990:2	0/1:0,79:33:79:1.00:2	0/1:7,5:33:12:0.417:2	./.	0/1:52,31:33:83:0.373:2	0/1:89,50:32:139:0.360:2	0/1:65,36:32:101:0.356:2	0/1:1,115:32:116:0.991:2	0/1:0,122:33:122:1.00:2	0/1:47,43:32:90:0.478:2	0/1:84,76:32:161:0.475:2
chr3	194387186	rs35670721	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,41:31:105:0.390:2
chr3	194387253	rs34423045	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,34:29:91:0.374:2
chr3	194387300	rs1675943	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,36:31:36:1.00:2	0/1:0,17:33:17:1.00:2	./.	./.	0/1:15,13:31:28:0.464:2	0/1:23,13:31:36:0.361:2	0/1:15,13:31:28:0.464:2	0/1:1,35:31:36:0.972:2	0/1:2,27:31:29:0.931:2	./.	0/1:22,15:29:37:0.405:2
chr3	194409484	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:32:60:0.067:2	./.
chr3	195013004	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:31:122:0.033:2
chr3	195245881	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,6:33:198:0.030:2
chr3	195251628	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:32:180:0.022:2	./.
chr3	195269745	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,5:27:131:0.038:2	0/1:100,4:31:104:0.038:2
chr3	195269749	rs147893127	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,6:28:141:0.043:2	0/1:103,4:30:107:0.037:2
chr3	195306219	rs5953	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,15:32:37:0.405:2	0/1:14,7:32:21:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195426305	rs9860655	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,22:28:66:0.333:2	./.	./.	./.	./.	./.	./.	0/1:34,35:29:69:0.507:2
chr3	195447871	rs11185524	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,37:32:152:0.243:2	./.	0/1:182,11:32:193:0.057:2	./.	./.	./.	./.	0/1:130,47:32:177:0.266:2
chr3	195447886	rs7627924	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,21:31:94:0.223:2	0/1:24,8:33:32:0.250:2	0/1:23,7:30:30:0.233:2	0/1:90,76:32:166:0.458:2	./.	0/1:158,30:32:188:0.160:2	0/1:46,55:33:101:0.545:2	0/1:176,19:33:195:0.097:2	0/1:99,32:33:131:0.244:2	0/1:99,39:33:139:0.283:2	0/1:116,61:33:177:0.345:2
chr3	195451591	rs201873450	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:31,7:32:38:0.184:2	0/1:30,5:32:35:0.143:2	./.	./.	./.	./.	0/1:71,12:31:83:0.145:2	./.	./.	./.	./.
chr3	195451613	rs200182709	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:42,9:31:51:0.176:2	0/1:31,8:32:39:0.205:2	./.	./.	./.	./.	0/1:66,10:32:78:0.132:2	./.	./.	./.	./.
chr3	195451651	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:78,11:32:89:0.124:2	0/1:39,7:32:46:0.152:2	./.	./.	0/1:56,21:31:77:0.273:2	./.	./.	0/1:137,40:31:177:0.226:2	0/1:73,14:33:87:0.161:2	0/1:88,10:31:98:0.102:2	0/1:160,15:29:175:0.086:2
chr3	195451697	rs200209995	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:123,30:27:153:0.196:2	0/1:73,11:28:84:0.131:2	./.	./.	0/1:95,19:30:114:0.167:2	./.	./.	./.	0/1:145,35:30:180:0.194:2	0/1:149,23:27:172:0.134:2	./.
chr3	195451810	rs200706535	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,18:33:179:0.101:2	0/1:135,36:32:171:0.211:2	./.	./.
chr3	195451841	rs201228126	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,36:29:183:0.197:2	0/1:142,40:30:182:0.220:2	./.	./.
chr3	195451880	rs142096782	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,179:30:181:0.989:2	0/1:3,155:29:158:0.981:2	0/1:0,148:29:148:1.00:2	0/1:90,106:30:196:0.541:2	0/1:18,163:29:181:0.901:2	0/1:0,187:30:187:1.00:2	0/1:0,186:30:186:1.00:2	0/1:1,180:30:181:0.994:2	0/1:3,176:31:179:0.983:2	0/1:2,160:30:162:0.988:2	0/1:5,165:29:170:0.971:2
chr3	195451881	rs146888306	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,179:32:181:0.989:2	0/1:2,155:32:157:0.987:2	0/1:0,148:31:148:1.00:2	0/1:90,106:32:196:0.541:2	0/1:17,163:32:180:0.906:2	0/1:0,187:32:187:1.00:2	0/1:0,186:33:186:1.00:2	0/1:1,180:32:181:0.994:2	0/1:2,176:33:178:0.989:2	0/1:2,161:32:163:0.988:2	0/1:2,164:32:166:0.988:2
chr3	195451917	rs369019587	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:193,6:31:199:0.030:2	./.	0/1:193,6:30:199:0.030:2	0/1:191,5:31:196:0.026:2	0/1:186,11:31:197:0.056:2	0/1:180,9:30:189:0.048:2	./.	0/1:181,16:30:197:0.081:2	0/1:186,8:30:194:0.041:2
chr3	195452005	rs145612981	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,127:31:130:0.977:2	0/1:2,94:30:96:0.979:2	0/1:26,40:31:66:0.606:2	0/1:25,153:30:178:0.860:2	0/1:54,65:31:119:0.546:2	0/1:51,124:30:175:0.709:2	0/1:68,111:30:179:0.620:2	0/1:105,72:31:177:0.407:2	0/1:57,110:32:167:0.659:2	0/1:76,67:31:143:0.469:2	0/1:52,85:30:137:0.620:2
chr3	195452018	rs2688539	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,82:31:84:0.976:2	0/1:0,66:31:66:1.00:2	0/1:27,27:30:54:0.500:2	0/1:95,41:30:137:0.301:2	0/1:53,30:31:83:0.361:2	0/1:54,70:31:124:0.565:2	0/1:61,64:31:125:0.512:2	0/1:75,59:31:134:0.440:2	0/1:1,84:31:86:0.988:2	0/1:80,45:30:125:0.360:2	0/1:54,53:30:107:0.495:2
chr3	195452062	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:90,4:31:94:0.043:2	0/1:59,6:30:65:0.092:2	./.	0/1:145,5:32:150:0.033:2	0/1:54,5:26:59:0.085:2	0/1:106,14:28:120:0.117:2	0/1:83,11:30:94:0.117:2	0/1:112,10:28:122:0.082:2	0/1:71,7:31:78:0.090:2	0/1:84,9:28:93:0.097:2	./.
chr3	195452098	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:120,7:32:127:0.055:2	./.	./.	./.	0/1:93,11:32:104:0.106:2	0/1:56,6:32:62:0.097:2	./.	./.
chr3	195452106	rs377687434	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,4:30:112:0.036:2	./.	./.	0/1:51,6:31:57:0.105:2	0/1:90,4:30:94:0.043:2	./.	./.	./.
chr3	195452119	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:55,4:31:59:0.068:2	./.	./.	0/1:94,4:29:98:0.041:2	./.	./.	./.	0/1:81,4:29:85:0.047:2	./.	./.	./.
chr3	195452132	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,6:32:86:0.070:2	./.	0/1:73,4:31:77:0.052:2	./.	./.	./.
chr3	195452155	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,5:31:61:0.082:2	./.	0/1:62,8:31:70:0.114:2	0/1:25,4:35:29:0.138:2	./.	./.
chr3	195452668	rs201581458	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:137,34:29:171:0.199:2	0/1:146,32:28:179:0.180:2	0/1:85,25:29:110:0.227:2	./.	./.	0/1:134,42:29:176:0.239:2	0/1:155,35:28:190:0.184:2	0/1:160,36:30:196:0.184:2	./.	0/1:110,79:30:189:0.418:2	0/1:101,68:28:170:0.402:2
chr3	195452689	rs141077164	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:142,29:30:171:0.170:2	0/1:152,34:32:186:0.183:2	0/1:31,91:30:122:0.746:2	0/1:137,56:32:193:0.290:2	./.	0/1:33,158:31:191:0.827:2	0/1:104,89:32:193:0.461:2	0/1:133,55:32:190:0.293:2	0/1:161,25:33:186:0.134:2	0/1:101,80:32:181:0.442:2	0/1:106,85:32:191:0.445:2
chr3	195452770	rs2550231	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:139,41:31:180:0.228:2	0/1:154,30:32:184:0.163:2	0/1:57,24:32:81:0.296:2	0/1:155,30:30:185:0.162:2	./.	0/1:157,23:31:180:0.128:2	0/1:156,29:31:185:0.157:2	0/1:164,26:31:190:0.137:2	./.	0/1:141,35:30:176:0.199:2	0/1:113,45:32:158:0.285:2
chr3	195452799	rs2550232	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:125,50:31:175:0.286:2	0/1:143,36:31:179:0.201:2	0/1:34,18:30:52:0.346:2	0/1:146,45:30:191:0.236:2	./.	0/1:86,103:30:189:0.545:2	0/1:135,53:29:188:0.282:2	0/1:143,47:30:190:0.247:2	./.	0/1:98,43:30:142:0.305:2	0/1:72,71:30:143:0.497:2
chr3	195452805	rs138659995	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:113,68:31:181:0.376:2	0/1:105,75:32:180:0.417:2	./.	./.	0/1:83,109:31:192:0.568:2	./.	./.	./.	0/1:99,95:33:194:0.490:2	0/1:96,49:31:145:0.338:2	./.
chr3	195452814	rs199753483	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:41,5:32:46:0.109:2	0/1:161,27:30:188:0.144:2	./.	0/1:169,24:29:193:0.124:2	0/1:166,32:30:198:0.162:2	0/1:169,29:30:198:0.146:2	./.	0/1:133,20:32:153:0.131:2	0/1:107,47:30:154:0.305:2
chr3	195452870	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:154,13:30:168:0.078:2	./.	0/1:154,20:29:175:0.115:2	./.	0/1:176,8:28:184:0.043:2	0/1:160,8:28:168:0.048:2	./.	0/1:141,6:30:147:0.041:2
chr3	195452872	.	A	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:152,14:31:166:0.084:2	./.	0/1:149,20:31:169:0.118:2	./.	0/1:176,8:30:185:0.043:2	0/1:157,7:30:164:0.043:2	./.	0/1:137,6:31:143:0.042:2
chr3	195452873	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:151,14:32:165:0.085:2	./.	0/1:146,20:31:166:0.120:2	./.	0/1:174,8:31:182:0.044:2	0/1:156,8:31:164:0.049:2	./.	0/1:137,6:32:143:0.042:2
chr3	195452951	rs2688542	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:7,103:32:110:0.936:2	0/1:5,64:32:69:0.928:2	0/1:8,22:33:30:0.733:2	0/1:113,70:33:183:0.383:2	./.	0/1:109,83:32:192:0.432:2	0/1:3,154:32:157:0.981:2	0/1:44,144:33:188:0.766:2	0/1:79,80:34:159:0.503:2	0/1:6,66:33:72:0.917:2	0/1:0,175:32:175:1.00:2
chr3	195452960	rs4093817	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:104,22:30:126:0.175:2	./.	./.	./.	0/1:152,9:32:161:0.056:2	0/1:72,4:31:76:0.053:2	./.
chr3	195452980	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,6:32:104:0.058:2	./.	./.	./.	0/1:179,4:34:183:0.022:2	./.	./.
chr3	195452987	rs9866681	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:76,21:31:97:0.216:2	0/1:50,17:29:67:0.254:2	./.	0/1:149,28:30:177:0.158:2	./.	./.	0/1:100,26:29:127:0.206:2	./.	./.	./.	0/1:119,56:31:175:0.320:2
chr3	195452991	rs3828411	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:75,20:31:95:0.211:2	0/1:50,18:30:68:0.265:2	./.	0/1:146,29:30:175:0.166:2	./.	./.	0/1:96,24:28:120:0.200:2	./.	./.	./.	0/1:122,55:29:177:0.311:2
chr3	195453014	rs3828410	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:70,29:32:99:0.293:2	0/1:41,12:32:53:0.226:2	./.	./.	./.	./.	0/1:82,32:33:114:0.281:2	./.	./.	./.	./.
chr3	195453064	rs2550233	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,97:32:98:0.990:2	0/1:0,51:32:51:1.00:2	0/1:0,42:32:42:1.00:2	0/1:56,128:32:184:0.696:2	0/1:1,46:32:47:0.979:2	0/1:0,182:33:182:1.00:2	0/1:1,111:32:112:0.991:2	0/1:1,163:32:164:0.994:2	0/1:0,149:34:149:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,175:32:176:1.00:2
chr3	195453205	rs9870815	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,16:32:97:0.165:2	./.	./.	./.	./.	./.	./.	0/1:55,42:32:97:0.433:2
chr3	195453243	rs3828408	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,29:32:72:0.403:2	0/1:17,19:32:36:0.528:2	./.	0/1:88,24:32:112:0.214:2	0/1:53,10:31:63:0.159:2	./.	0/1:46,30:32:76:0.395:2	0/1:83,39:32:122:0.320:2	0/1:41,33:32:74:0.446:2	0/1:22,5:34:27:0.185:2	0/1:68,45:32:113:0.398:2
chr3	195453249	rs3828407	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:57,15:30:72:0.208:2	0/1:27,10:30:37:0.270:2	./.	./.	0/1:56,9:29:65:0.138:2	./.	./.	./.	0/1:76,6:32:82:0.073:2	0/1:23,6:31:29:0.207:2	./.
chr3	195453257	rs3828406	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:57,14:32:71:0.197:2	0/1:29,9:29:38:0.237:2	./.	0/1:94,27:32:121:0.223:2	./.	./.	0/1:61,32:32:93:0.344:2	0/1:91,47:31:138:0.341:2	0/1:53,31:33:84:0.369:2	./.	0/1:63,48:31:111:0.432:2
chr3	195453310	rs9758494	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:59,25:31:84:0.298:2	0/1:31,10:32:41:0.244:2	./.	./.	0/1:65,30:31:95:0.316:2	./.	./.	./.	0/1:85,22:32:107:0.206:2	0/1:30,25:30:55:0.455:2	./.
chr3	195453406	rs3210209	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:28,11:30:39:0.282:2	0/1:16,9:33:25:0.360:2	./.	0/1:78,16:30:94:0.170:2	./.	0/1:94,23:32:117:0.197:2	0/1:21,24:32:45:0.533:2	./.	./.	./.	0/1:37,27:31:65:0.422:2
chr3	195453412	rs1063306	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:30,11:29:41:0.268:2	0/1:15,9:31:24:0.375:2	./.	0/1:77,14:29:91:0.154:2	./.	0/1:87,22:30:109:0.202:2	0/1:22,20:31:43:0.476:2	./.	./.	./.	0/1:36,25:29:61:0.410:2
chr3	195453434	rs113099255	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:17,14:32:31:0.452:2	0/1:15,3:29:18:0.167:2	./.	./.	0/1:22,7:29:29:0.241:2	./.	./.	./.	0/1:34,16:31:50:0.320:2	0/1:17,22:31:39:0.564:2	./.
chr3	195456545	rs11923495	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,12:30:71:0.169:2	./.	./.	./.	./.	./.
chr3	195456561	rs3762739	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:19,8:34:27:0.296:2	0/1:20,7:30:27:0.259:2	./.	0/1:71,11:31:83:0.134:2	./.	./.	0/1:23,29:27:52:0.558:2	./.	./.	./.	0/1:38,29:32:68:0.433:2
chr3	195460044	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,43:31:191:0.225:2	./.	./.	./.	./.	./.
chr3	195474159	rs62284986	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,50:31:163:0.307:2	0/1:63,30:31:93:0.323:2	./.	./.
chr3	195475799	rs3205933	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:15,4:29:19:0.211:2	./.	./.	./.	0/1:14,17:30:31:0.548:2	./.	./.	./.	0/1:19,3:32:22:0.136:2	0/1:8,10:29:18:0.556:2	./.
chr3	195477786	rs6808605	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:15,14:27:29:0.483:2	0/1:9,13:32:22:0.591:2	./.	./.	0/1:48,27:31:75:0.360:2	./.	./.	./.	0/1:27,22:32:49:0.449:2	0/1:34,19:32:53:0.358:2	./.
chr3	195477791	rs2291652	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,14:29:30:0.467:2	0/1:15,7:31:22:0.318:2	0/1:0,11:31:11:1.00:2	0/1:31,27:29:58:0.466:2	./.	0/1:24,34:30:58:0.586:2	0/1:0,85:31:85:1.00:2	0/1:34,26:30:60:0.433:2	./.	0/1:25,32:30:57:0.561:2	0/1:1,37:30:38:0.974:2
chr3	195479256	rs2258447	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:33:44:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,51:32:51:1.00:2	0/1:27,31:32:58:0.534:2	0/1:0,50:32:50:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,51:33:51:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,48:32:48:1.00:2
chr3	195489009	rs2246901	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,12:29:23:0.545:2	0/1:14,11:32:25:0.440:2	0/1:0,4:29:4:1.00:2	0/1:24,31:26:55:0.564:2	0/1:13,25:27:38:0.658:2	0/1:0,58:28:58:1.00:2	0/1:0,32:28:32:1.00:2	0/1:0,56:27:57:1.00:2	0/1:20,27:29:47:0.574:2	0/1:12,15:27:27:0.556:2	0/1:0,33:28:34:1.00:2
chr3	195489067	rs2246980	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:13,15:30:28:0.536:2	0/1:22,16:30:38:0.421:2	0/1:0,11:29:11:1.00:2	./.	0/1:32,37:29:69:0.536:2	0/1:2,91:29:93:0.978:2	0/1:0,50:28:50:1.00:2	0/1:48,30:28:78:0.385:2	./.	0/1:26,16:29:42:0.381:2	0/1:0,35:28:35:1.00:2
chr3	195495916	rs2550240	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,24:32:40:0.600:2	0/1:8,11:33:19:0.579:2	0/1:0,12:33:12:1.00:2	0/1:26,28:33:54:0.519:2	./.	0/1:0,69:32:69:1.00:2	0/1:0,74:33:74:1.00:2	0/1:43,22:33:65:0.338:2	./.	0/1:29,14:32:43:0.326:2	0/1:29,22:32:51:0.431:2
chr3	195497143	rs2293232	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,31:30:58:0.544:2	./.	./.	./.	./.	./.	0/1:24,22:30:47:0.478:2	./.
chr3	195497174	rs2259102	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:33:48:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,10:32:10:1.00:2	0/1:37,34:33:71:0.479:2	0/1:46,32:32:78:0.410:2	0/1:0,64:32:64:1.00:2	0/1:0,58:33:58:1.00:2	0/1:1,76:33:77:0.987:2	0/1:0,59:32:59:1.00:2	0/1:44,29:34:74:0.397:2	0/1:0,66:32:66:1.00:2
chr3	195501149	rs2259292	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:31:26:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,2:31:2:1.00:2	0/1:32,24:30:56:0.429:2	0/1:28,17:32:45:0.378:2	0/1:0,40:30:40:1.00:2	0/1:6,40:32:46:0.870:2	0/1:33,17:29:50:0.340:2	0/1:40,15:31:55:0.273:2	0/1:19,11:30:30:0.367:2	0/1:0,55:31:55:1.00:2
chr3	195501162	rs151016062	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,9:33:27:0.333:2	0/1:14,8:33:22:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195505664	rs2688513	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,99:31:99:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,9:31:9:1.00:2	0/1:68,71:31:139:0.511:2	0/1:72,51:32:123:0.415:2	0/1:1,137:31:138:0.993:2	0/1:3,105:31:108:0.972:2	0/1:2,130:30:132:0.985:2	0/1:0,120:32:120:1.00:2	0/1:61,54:31:115:0.470:2	0/1:0,73:31:73:1.00:2
chr3	195505762	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:107,4:31:111:0.036:2	./.	./.	./.	0/1:180,5:29:185:0.027:2	./.	0/1:153,4:33:157:0.025:2	0/1:167,4:32:171:0.023:2	./.	./.	0/1:115,4:33:119:0.034:2
chr3	195505763	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:31:170:0.024:2	./.	./.	./.
chr3	195505772	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,6:31:139:0.043:2	0/1:152,8:30:160:0.050:2	0/1:155,5:31:161:0.031:2	./.	./.	./.
chr3	195505774	.	G	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,4:32:114:0.035:2	0/1:79,7:32:88:0.081:2	./.	./.	./.	0/1:133,6:29:140:0.043:2	./.	./.	./.	./.	./.
chr3	195505781	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,5:27:121:0.041:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195505788	rs2550253	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,60:32:106:0.566:2	0/1:36,43:30:79:0.544:2	0/1:8,8:32:16:0.500:2	0/1:98,43:32:142:0.305:2	0/1:136,34:33:170:0.200:2	0/1:49,68:31:117:0.581:2	0/1:45,86:32:131:0.656:2	0/1:111,34:32:145:0.234:2	0/1:65,42:31:107:0.393:2	0/1:78,46:32:124:0.371:2	0/1:30,69:31:99:0.697:2
chr3	195505801	rs200432267	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:96,16:28:113:0.143:2	0/1:80,8:28:88:0.091:2	0/1:12,4:28:17:0.250:2	0/1:128,11:27:139:0.079:2	0/1:145,21:30:167:0.127:2	0/1:107,18:26:126:0.144:2	0/1:107,21:28:129:0.164:2	0/1:132,14:29:147:0.096:2	./.	0/1:117,4:30:121:0.033:2	0/1:75,15:27:91:0.167:2
chr3	195505814	rs199819876	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:94,11:30:105:0.105:2	0/1:73,7:27:80:0.088:2	./.	0/1:128,9:30:137:0.066:2	0/1:160,6:31:166:0.036:2	0/1:102,24:29:126:0.190:2	0/1:103,19:29:122:0.156:2	0/1:135,9:31:144:0.063:2	0/1:100,5:32:105:0.048:2	0/1:111,8:29:119:0.067:2	0/1:70,11:30:82:0.136:2
chr3	195505819	rs425588	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,5:28:116:0.043:2	./.	./.
chr3	195505822	.	G	T,A	.	PASS	AC=1,1;AF=0.167,0.167;AN=6;SOMATIC;VT=SNP;set=variant3-variant10	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/2:31:112:0.064:2	./.	./.	./.	./.	./.	./.	./.	0/1:32:117:0.052:2	./.	./.
chr3	195505827	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,7:30:131:0.054:2	./.	./.	./.	./.	./.
chr3	195505828	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,5:27:135:0.037:2	./.	./.	./.	./.	./.	./.	./.
chr3	195505829	.	G	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:94,12:28:106:0.113:2	0/1:72,12:26:84:0.143:2	0/1:12,3:32:15:0.200:2	0/1:115,19:30:134:0.142:2	./.	0/1:112,21:29:133:0.158:2	0/1:118,16:31:134:0.119:2	0/1:132,5:33:137:0.036:2	0/1:109,10:29:119:0.084:2	0/1:101,7:22:108:0.065:2	0/1:78,14:29:92:0.152:2
chr3	195505835	rs58500707	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:78,23:31:101:0.228:2	0/1:66,17:27:84:0.205:2	./.	./.	0/1:141,13:28:154:0.084:2	0/1:98,24:28:124:0.197:2	0/1:107,17:28:125:0.137:2	0/1:120,11:30:131:0.084:2	0/1:101,15:29:116:0.129:2	0/1:93,10:30:103:0.097:2	0/1:69,15:30:84:0.179:2
chr3	195505836	rs369326402	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:95,8:28:103:0.078:2	0/1:72,11:30:84:0.133:2	0/1:10,3:32:13:0.231:2	./.	0/1:147,9:30:156:0.058:2	0/1:119,5:33:124:0.040:2	./.	0/1:124,5:33:129:0.039:2	0/1:107,8:33:115:0.070:2	./.	./.
chr3	195505838	rs59101491	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:79,22:29:101:0.218:2	0/1:66,17:27:83:0.205:2	./.	./.	0/1:146,13:30:159:0.082:2	0/1:99,25:27:124:0.202:2	0/1:115,17:30:132:0.129:2	0/1:119,12:30:131:0.092:2	0/1:104,13:29:118:0.111:2	0/1:98,10:31:108:0.093:2	0/1:74,13:29:87:0.149:2
chr3	195505841	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,5:32:101:0.050:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195505842	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:97,5:27:102:0.049:2	./.	./.	0/1:124,5:30:129:0.039:2	./.	./.	0/1:129,5:30:134:0.037:2	./.	./.	./.	./.
chr3	195505849	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:91,5:26:96:0.052:2	./.	./.	./.	0/1:146,8:27:154:0.052:2	0/1:116,8:26:124:0.065:2	0/1:123,8:29:131:0.061:2	./.	0/1:122,7:28:129:0.054:2	./.	0/1:77,5:26:82:0.061:2
chr3	195505855	rs201422998	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:82,6:25:88:0.068:2	0/1:73,4:30:77:0.052:2	./.	0/1:120,7:29:127:0.055:2	0/1:151,6:28:157:0.038:2	./.	./.	./.	./.	0/1:101,4:31:105:0.038:2	./.
chr3	195505859	rs151339448	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,4:28:66:0.061:2	0/1:58,6:23:65:0.094:2	./.	./.	./.	0/1:99,8:27:107:0.075:2	0/1:114,9:27:123:0.073:2	./.	./.	./.	./.
chr3	195505870	rs201928034	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,4:32:64:0.063:2	./.	./.	./.	./.	0/1:91,7:23:98:0.071:2	0/1:105,5:31:110:0.045:2	./.	./.	./.	./.
chr3	195505877	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,3:32:50:0.060:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195505883	rs200813870	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,5:27:107:0.048:2	./.	./.
chr3	195505886	rs373784830	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,5:29:104:0.048:2	./.	./.	./.	./.	0/1:104,5:27:109:0.046:2	./.	./.
chr3	195505907	rs138720131	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,7:30:19:0.368:2	0/1:15,3:32:20:0.167:2	./.	0/1:73,9:32:82:0.110:2	0/1:92,5:27:99:0.052:2	0/1:41,5:23:48:0.109:2	0/1:40,18:32:58:0.310:2	0/1:91,5:29:98:0.052:2	0/1:89,5:26:94:0.053:2	./.	0/1:18,7:22:26:0.280:2
chr3	195505909	rs377017763	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,7:30:21:0.333:2	./.	./.	0/1:97,4:32:102:0.040:2	0/1:36,7:28:43:0.163:2	0/1:45,5:32:50:0.100:2	0/1:89,7:22:96:0.073:2	0/1:87,5:33:93:0.054:2	./.	0/1:20,4:25:25:0.167:2
chr3	195505910	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:15,7:26:22:0.318:2	./.	./.	./.	0/1:36,8:25:44:0.182:2	0/1:55,5:27:60:0.083:2	0/1:89,7:24:96:0.073:2	0/1:92,5:27:97:0.052:2	./.	./.
chr3	195505925	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:11,4:34:16:0.267:2	./.	./.	./.	./.	./.	0/1:30,9:32:40:0.231:2	./.	0/1:68,4:33:72:0.056:2	./.	0/1:14,4:25:20:0.222:2
chr3	195505930	rs201499581	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,10:32:10:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,3:32:3:1.00:2	0/1:58,16:27:75:0.216:2	0/1:78,8:32:86:0.093:2	0/1:1,15:32:16:0.938:2	0/1:3,25:30:28:0.893:2	0/1:75,11:32:86:0.128:2	0/1:49,10:32:59:0.169:2	0/1:51,7:30:58:0.121:2	0/1:0,6:32:6:1.00:2
chr3	195505944	rs199963450	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,5:28:15:0.333:2	0/1:6,4:28:10:0.400:2	0/1:5,3:32:8:0.375:2	0/1:71,6:32:77:0.078:2	0/1:93,7:27:101:0.070:2	0/1:14,9:29:23:0.391:2	0/1:38,7:28:45:0.156:2	./.	./.	0/1:65,4:31:69:0.058:2	0/1:16,7:31:23:0.304:2
chr3	195505945	rs200786826	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,5:30:15:0.333:2	0/1:7,3:29:10:0.300:2	0/1:5,3:32:8:0.375:2	0/1:70,7:29:77:0.091:2	0/1:92,7:27:100:0.071:2	0/1:15,9:31:24:0.375:2	0/1:39,6:28:45:0.133:2	./.	./.	0/1:67,4:32:71:0.056:2	0/1:16,7:26:23:0.304:2
chr3	195505955	rs55789594	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,17:28:29:0.586:2	0/1:8,14:31:22:0.636:2	0/1:7,7:30:14:0.500:2	0/1:82,29:29:111:0.261:2	0/1:93,26:28:119:0.218:2	0/1:16,34:29:50:0.680:2	0/1:45,25:28:70:0.357:2	0/1:93,20:31:113:0.177:2	0/1:71,20:30:91:0.220:2	0/1:68,14:30:82:0.171:2	0/1:20,31:30:51:0.608:2
chr3	195505960	rs112020305	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,11:32:42:0.262:2	0/1:20,4:32:24:0.167:2	0/1:13,3:34:16:0.188:2	0/1:108,12:32:120:0.100:2	0/1:120,11:31:131:0.084:2	0/1:44,26:31:70:0.371:2	0/1:65,12:32:77:0.156:2	0/1:111,7:29:118:0.059:2	0/1:98,6:31:104:0.058:2	0/1:83,7:32:90:0.078:2	0/1:51,11:29:62:0.177:2
chr3	195505973	rs370811564	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,7:30:113:0.062:2	0/1:94,4:32:98:0.041:2	./.	./.	./.	./.
chr3	195505979	rs201251642	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,7:28:69:0.101:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195506005	rs202017381	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,11:32:84:0.131:2	0/1:40,11:31:51:0.216:2	0/1:30,6:31:36:0.167:2	0/1:155,13:31:168:0.077:2	0/1:146,14:31:160:0.088:2	0/1:125,18:30:143:0.126:2	0/1:103,29:31:134:0.220:2	0/1:137,10:32:147:0.068:2	0/1:141,11:31:152:0.072:2	0/1:122,13:29:135:0.096:2	0/1:123,18:32:141:0.128:2
chr3	195506007	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,10:32:84:0.119:2	0/1:41,10:30:51:0.196:2	0/1:31,6:32:37:0.162:2	0/1:153,11:32:164:0.067:2	0/1:149,12:31:161:0.075:2	0/1:133,13:30:146:0.089:2	0/1:108,26:31:134:0.194:2	0/1:139,10:31:149:0.067:2	0/1:144,11:32:155:0.071:2	0/1:129,9:29:138:0.065:2	0/1:131,13:32:144:0.090:2
chr3	195506022	rs367572598	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:157,4:32:161:0.025:2	0/1:140,7:33:147:0.048:2	0/1:134,5:26:139:0.036:2	./.	./.	./.	0/1:136,6:30:142:0.042:2
chr3	195506037	rs2432527	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,71:30:80:0.888:2	0/1:10,35:30:45:0.778:2	0/1:5,30:31:35:0.857:2	0/1:93,63:31:156:0.404:2	0/1:103,59:31:162:0.364:2	0/1:12,111:30:123:0.902:2	0/1:23,94:31:117:0.803:2	0/1:88,56:31:144:0.389:2	0/1:82,71:32:153:0.464:2	0/1:75,54:30:129:0.419:2	0/1:14,108:31:122:0.885:2
chr3	195506041	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:31,3:32:34:0.088:2	0/1:154,5:33:159:0.031:2	0/1:157,4:33:161:0.025:2	./.	0/1:106,8:32:114:0.070:2	./.	./.	./.	./.
chr3	195506091	rs74941663	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,9:27:11:0.900:2	./.	./.	./.	0/1:7,33:27:42:0.825:2	0/1:129,17:24:148:0.116:2	0/1:100,13:26:115:0.115:2	0/1:90,9:27:100:0.091:2	./.
chr3	195506099	rs199748333	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,11:26:15:0.733:2	0/1:1,4:26:5:0.800:2	0/1:2,7:27:9:0.778:2	0/1:120,12:24:133:0.091:2	0/1:141,14:27:155:0.090:2	0/1:3,30:25:33:0.909:2	0/1:14,19:25:33:0.576:2	0/1:133,13:26:148:0.089:2	0/1:101,12:26:114:0.106:2	0/1:97,10:22:108:0.093:2	0/1:5,15:24:20:0.750:2
chr3	195506117	rs200320052	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,3:28:14:0.214:2
chr3	195506118	rs375216275	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,5:29:11:0.455:2	0/1:1,2:31:3:0.667:2	./.	0/1:134,5:26:139:0.036:2	0/1:145,6:31:151:0.040:2	0/1:4,16:30:20:0.800:2	0/1:14,7:31:21:0.333:2	0/1:147,6:27:153:0.039:2	0/1:114,4:32:118:0.034:2	./.	0/1:5,8:31:13:0.615:2
chr3	195506156	rs199815527	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.	./.	./.	./.	./.	0/1:14,3:31:17:0.176:2	./.	./.	./.	0/1:6,3:26:9:0.333:2
chr3	195506178	rs182908415	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:1,3:33:4:0.750:2	./.	./.	./.	./.	./.	0/1:15,3:32:18:0.167:2	./.	./.	./.	./.
chr3	195506185	rs149026852	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,3:28:11:0.273:2
chr3	195506196	rs143382980	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:22:5:1.00:2	./.	./.	./.	./.	0/1:4,4:19:8:0.500:2
chr3	195506197	rs148307810	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:28:5:0.800:2	./.	./.	./.	./.	0/1:4,4:30:8:0.500:2
chr3	195506227	rs75610733	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	0/1:0,14:31:14:1.00:2	0/1:23,9:30:32:0.281:2	./.	./.	0/1:162,5:32:167:0.030:2	0/1:1,9:31:10:0.900:2
chr3	195506245	rs150394536	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,12:27:18:0.667:2	0/1:8,4:29:12:0.333:2	0/1:5,3:32:8:0.375:2	0/1:162,6:31:168:0.036:2	0/1:170,8:32:178:0.045:2	0/1:23,46:30:69:0.667:2	0/1:33,15:26:48:0.313:2	0/1:111,13:31:125:0.105:2	0/1:91,11:32:102:0.108:2	0/1:159,6:28:165:0.036:2	0/1:11,26:30:37:0.703:2
chr3	195506261	rs377680835	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,4:30:25:0.160:2	./.	./.	./.	./.	0/1:67,11:30:78:0.141:2	./.	./.	./.	./.	./.
chr3	195506267	rs370995233	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,15:29:28:0.536:2	0/1:7,6:28:14:0.462:2	0/1:6,3:31:9:0.333:2	0/1:157,12:30:169:0.071:2	0/1:170,8:30:178:0.045:2	0/1:23,50:30:74:0.685:2	0/1:30,19:28:50:0.388:2	0/1:80,20:29:100:0.200:2	0/1:55,16:30:71:0.225:2	./.	0/1:13,33:27:46:0.717:2
chr3	195506271	rs77023345	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,15:31:28:0.536:2	0/1:9,5:25:14:0.357:2	0/1:6,3:31:9:0.333:2	0/1:155,11:29:166:0.066:2	0/1:172,8:29:180:0.044:2	0/1:23,53:29:76:0.697:2	0/1:32,19:29:51:0.373:2	0/1:77,19:30:96:0.198:2	0/1:53,15:29:68:0.221:2	0/1:155,8:27:164:0.049:2	0/1:16,32:29:48:0.667:2
chr3	195506273	rs377584277	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,6:23:29:0.207:2	./.	./.	./.	./.	0/1:67,11:28:78:0.141:2	./.	./.	./.	./.	./.
chr3	195506281	rs201679145	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,20:33:61:0.328:2	0/1:32,15:34:47:0.319:2	./.	./.
chr3	195506282	rs199896027	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,20:33:61:0.328:2	0/1:32,15:32:47:0.319:2	./.	./.
chr3	195506302	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,17:33:61:0.279:2	0/1:33,19:32:52:0.365:2	./.	./.
chr3	195506315	rs62282465	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:29:8:0.375:2	./.	./.	./.	./.	0/1:42,35:29:78:0.455:2	0/1:32,31:28:63:0.492:2	./.	./.
chr3	195506318	rs62282466	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:30:8:0.375:2	./.	./.	0/1:61,15:32:76:0.197:2	0/1:46,6:26:52:0.115:2	0/1:41,38:32:79:0.481:2	0/1:30,33:31:63:0.524:2	./.	./.
chr3	195506332	rs202163261	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:22,5:30:27:0.185:2	./.	./.	./.	./.	./.	0/1:38,6:27:44:0.136:2	./.	./.	./.	0/1:29,6:26:35:0.171:2
chr3	195506341	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,4:32:15:0.267:2
chr3	195506342	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,4:29:15:0.267:2
chr3	195506354	rs144160315	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,8:29:13:0.615:2	0/1:1,4:30:5:0.800:2	./.	./.	0/1:138,12:25:150:0.080:2	0/1:17,5:31:22:0.227:2	0/1:17,6:23:23:0.261:2	0/1:85,6:29:92:0.066:2	./.	./.	0/1:7,6:26:13:0.462:2
chr3	195506370	rs374883971	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,6:29:18:0.333:2	./.	./.	./.	./.	0/1:13,16:28:29:0.552:2	0/1:28,8:26:36:0.222:2	./.	./.	./.	0/1:12,7:28:19:0.368:2
chr3	195506387	rs201542091	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:6,8:29:14:0.571:2	0/1:7,5:29:12:0.417:2	0/1:1,3:32:4:0.750:2	./.	0/1:132,8:27:140:0.057:2	0/1:7,22:29:29:0.759:2	0/1:16,15:29:31:0.484:2	0/1:111,9:26:121:0.075:2	./.	./.	0/1:6,11:28:17:0.647:2
chr3	195506398	rs74573747	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,6:28:14:0.429:2	./.	./.	0/1:137,5:30:142:0.035:2	0/1:126,6:28:132:0.045:2	0/1:18,4:30:22:0.182:2	0/1:22,9:30:31:0.290:2	0/1:108,5:31:113:0.044:2	./.	./.	./.
chr3	195506410	rs79037473	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,10:26:14:0.714:2	0/1:4,5:25:9:0.556:2	0/1:0,4:30:4:1.00:2	0/1:126,6:25:132:0.045:2	0/1:123,8:26:131:0.061:2	0/1:12,6:29:18:0.333:2	0/1:14,16:30:30:0.533:2	0/1:82,11:29:93:0.118:2	0/1:63,5:28:68:0.074:2	./.	0/1:5,9:30:14:0.643:2
chr3	195506421	rs147066573	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,5:31:12:0.417:2	./.	./.	./.	./.	./.
chr3	195506435	rs379344	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,45:31:57:0.789:2	0/1:5,38:32:43:0.884:2	./.	./.
chr3	195506446	rs62282468	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,37:30:50:0.740:2	0/1:5,28:31:33:0.848:2	./.	./.
chr3	195506460	rs113130007	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,5:29:15:0.333:2	0/1:36,3:35:39:0.077:2	./.	./.	./.
chr3	195506473	rs201922637	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:28:6:0.500:2	./.	0/1:3,16:32:19:0.842:2	0/1:1,9:31:10:0.900:2	./.	./.
chr3	195506499	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,4:24:4:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,2:31:2:1.00:2	0/1:126,6:30:132:0.045:2	./.	./.	0/1:1,3:22:4:0.750:2	./.	./.	./.	0/1:0,7:27:7:1.00:2
chr3	195506514	rs187734372	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:25:5:0.600:2
chr3	195506530	rs201186756	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	0/1:0,2:34:2:1.00:2
chr3	195506542	rs200412534	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,9:31:22:0.409:2	0/1:7,7:32:14:0.500:2	./.	./.
chr3	195506549	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:8,3:33:11:0.273:2	./.	./.	./.	./.	./.	./.	0/1:21,16:31:37:0.432:2	0/1:11,12:32:23:0.522:2	./.	0/1:10,3:34:13:0.231:2
chr3	195506555	rs368695884	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,3:32:16:0.188:2
chr3	195506569	rs201891747	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,33:31:61:0.541:2	0/1:13,32:33:45:0.711:2	0/1:138,4:32:143:0.028:2	0/1:14,3:34:17:0.176:2
chr3	195506582	rs201177106	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,4:30:32:0.125:2	0/1:27,3:30:30:0.100:2	./.	./.	./.	./.
chr3	195506587	rs368854101	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:9,4:25:13:0.308:2	./.	0/1:130,5:30:135:0.037:2	./.	0/1:24,8:28:32:0.250:2	./.	./.	./.	./.	0/1:15,8:31:23:0.348:2
chr3	195506590	rs199621200	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,4:31:33:0.129:2	./.	./.	./.	./.	./.
chr3	195506597	rs200685331	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,5:31:21:0.238:2	./.	./.	./.	./.	0/1:30,4:30:34:0.118:2	0/1:26,7:32:33:0.212:2	./.	./.	./.	./.
chr3	195506603	rs201602653	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,4:28:20:0.200:2	./.	./.	./.	./.	0/1:33,4:29:37:0.108:2	0/1:28,7:28:35:0.200:2	./.	./.	./.	./.
chr3	195506606	rs374077908	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,4:29:20:0.200:2	./.	./.	./.	./.	0/1:33,4:32:37:0.108:2	0/1:28,7:31:35:0.200:2	./.	./.	./.	./.
chr3	195506627	rs145875920	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:17,4:34:21:0.190:2	0/1:13,8:31:21:0.381:2	./.	0/1:158,10:22:169:0.060:2	./.	0/1:28,8:32:36:0.222:2	0/1:19,6:30:25:0.240:2	0/1:151,17:32:168:0.101:2	0/1:149,11:26:160:0.069:2	0/1:160,9:28:171:0.053:2	0/1:28,6:32:34:0.176:2
chr3	195506647	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,5:30:23:0.217:2	./.	./.	./.	./.
chr3	195506652	rs62282469	A	G,C	.	PASS	AC=3,3;AF=0.167,0.167;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant10	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0/1:29:12:0.333:2	./.	./.	./.	0/2:32:187:0.022:2	0/2:27:23:0.217:2	0/2:30:21:0.263:2	0/1:29:161:0.944:2	0/1:29:166:0.934:2	./.	./.
chr3	195506655	rs200897653	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,8:31:14:0.571:2	0/1:2,10:30:12:0.833:2	./.	0/1:180,6:29:187:0.032:2	0/1:181,8:31:190:0.042:2	0/1:1,18:28:19:0.947:2	0/1:12,12:29:24:0.500:2	0/1:173,7:29:180:0.039:2	0/1:163,11:29:174:0.063:2	0/1:164,7:29:171:0.041:2	0/1:0,23:28:23:1.00:2
chr3	195506678	rs372632160	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:31:145:0.028:2	./.	./.
chr3	195506704	rs201760283	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:31:6:0.667:2
chr3	195506726	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195506746	rs192522651	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,13:30:15:0.867:2	0/1:0,5:31:5:1.00:2	0/1:2,3:30:5:0.600:2	0/1:131,6:29:138:0.044:2	./.	0/1:0,14:30:14:1.00:2	0/1:11,10:30:21:0.476:2	0/1:34,10:30:44:0.227:2	./.	0/1:126,4:32:130:0.031:2	0/1:0,6:30:6:1.00:2
chr3	195506747	rs62282470	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,20:24:37:0.588:2	0/1:5,8:16:16:0.615:2	./.	./.
chr3	195506750	rs62282471	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,19:30:33:0.576:2	0/1:7,9:27:16:0.563:2	./.	./.
chr3	195506753	rs9882363	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:32:16:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,141:32:141:1.00:2	0/1:0,159:32:160:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,14:34:14:1.00:2	0/1:0,117:33:117:1.00:2	0/1:0,8:32:8:1.00:2
chr3	195506760	rs62282473	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,43:32:65:0.662:2	0/1:12,31:34:43:0.721:2	./.	./.
chr3	195506775	rs79609066	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,19:32:22:0.864:2	0/1:3,9:31:12:0.750:2	0/1:2,5:32:7:0.714:2	0/1:140,13:32:153:0.085:2	0/1:153,12:31:165:0.073:2	0/1:3,31:32:34:0.912:2	0/1:6,28:31:34:0.824:2	0/1:78,26:30:104:0.250:2	0/1:62,16:32:78:0.205:2	0/1:106,9:33:115:0.078:2	0/1:3,18:30:21:0.857:2
chr3	195506788	rs3103961	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:146,7:28:153:0.046:2	./.	./.	./.	./.	./.	./.	./.
chr3	195506826	rs369514019	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:22,3:32:25:0.120:2	./.	0/1:138,7:31:145:0.048:2	0/1:158,5:27:163:0.031:2	./.	./.	./.	./.	./.	./.
chr3	195506857	rs200706465	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:138,4:31:142:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr3	195506914	rs186560307	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,8:29:12:0.667:2	0/1:2,10:31:12:0.833:2	0/1:0,2:30:2:1.00:2	0/1:78,13:30:91:0.143:2	0/1:68,13:31:81:0.160:2	0/1:1,13:32:14:0.929:2	0/1:5,23:31:28:0.821:2	0/1:109,11:30:120:0.092:2	0/1:82,7:33:89:0.079:2	./.	0/1:1,13:31:14:0.929:2
chr3	195506917	rs150128295	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,9:31:11:0.900:2	0/1:0,11:32:12:1.00:2	0/1:0,2:32:2:1.00:2	0/1:76,13:29:90:0.146:2	0/1:62,13:32:76:0.173:2	0/1:0,13:31:14:1.00:2	0/1:5,23:32:29:0.821:2	0/1:100,12:31:114:0.107:2	0/1:81,8:31:89:0.090:2	./.	0/1:0,13:33:14:1.00:2
chr3	195506940	rs201483428	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,3:32:18:0.176:2	0/1:9,6:32:15:0.400:2	./.	0/1:80,9:31:89:0.101:2	0/1:79,5:32:84:0.060:2	0/1:11,5:31:16:0.313:2	0/1:20,4:32:24:0.167:2	0/1:127,5:30:132:0.038:2	./.	./.	0/1:17,6:33:23:0.261:2
chr3	195506946	rs375329116	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,6:27:18:0.333:2	0/1:11,5:26:16:0.313:2	0/1:2,2:36:4:0.500:2	0/1:85,7:27:92:0.076:2	0/1:84,5:28:89:0.056:2	0/1:10,8:29:18:0.444:2	0/1:14,12:29:26:0.462:2	0/1:116,18:26:134:0.134:2	./.	0/1:60,12:29:72:0.167:2	0/1:9,12:29:21:0.571:2
chr3	195506953	rs200568365	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:11,7:25:18:0.389:2	./.	./.	./.	0/1:89,7:22:96:0.073:2	./.	./.	0/1:135,7:26:142:0.049:2	./.	./.	./.
chr3	195506955	rs201420433	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,6:32:19:0.316:2	0/1:12,6:31:18:0.333:2	./.	0/1:81,11:30:92:0.120:2	0/1:91,9:30:100:0.090:2	0/1:12,12:29:24:0.500:2	0/1:18,18:28:36:0.500:2	0/1:114,26:28:140:0.186:2	0/1:72,4:29:77:0.053:2	0/1:62,12:28:74:0.162:2	0/1:10,16:28:26:0.615:2
chr3	195506963	rs199588013	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:101,7:27:110:0.065:2	./.	./.	./.	./.	./.	0/1:27,5:26:33:0.156:2
chr3	195506974	rs142066159	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,10:31:38:0.263:2	0/1:22,6:32:28:0.214:2	0/1:6,3:32:9:0.333:2	0/1:93,9:32:102:0.088:2	0/1:106,12:28:118:0.102:2	0/1:41,12:28:53:0.226:2	0/1:46,25:30:71:0.352:2	0/1:144,9:29:153:0.059:2	0/1:71,12:30:83:0.145:2	0/1:74,8:31:82:0.098:2	0/1:45,9:31:54:0.167:2
chr3	195506975	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,5:33:40:0.125:2	./.	./.	./.	./.	0/1:52,7:33:59:0.119:2	0/1:73,4:34:77:0.052:2	./.	./.	./.	./.
chr3	195506982	.	G	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:31,6:26:37:0.162:2	./.	0/1:105,7:32:112:0.063:2	./.	0/1:73,7:30:81:0.088:2	0/1:91,5:31:96:0.052:2	0/1:144,7:24:151:0.046:2	./.	./.	0/1:62,6:32:68:0.088:2
chr3	195506983	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,5:32:112:0.045:2	./.	0/1:76,7:31:83:0.084:2	0/1:92,5:31:97:0.052:2	./.	./.	./.	0/1:64,5:33:69:0.072:2
chr3	195506987	rs200157887	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,15:32:59:0.254:2	0/1:37,4:33:42:0.098:2	./.	0/1:107,5:28:113:0.045:2	0/1:132,4:31:138:0.029:2	0/1:74,18:32:92:0.196:2	0/1:103,12:30:115:0.104:2	0/1:138,7:27:145:0.048:2	./.	./.	0/1:69,8:29:78:0.104:2
chr3	195506990	rs200783894	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:45,15:33:60:0.250:2	0/1:39,4:33:43:0.093:2	./.	0/1:113,4:32:117:0.034:2	0/1:136,4:31:141:0.029:2	0/1:75,18:32:93:0.194:2	0/1:111,12:30:123:0.098:2	0/1:139,7:31:146:0.048:2	./.	./.	0/1:73,7:31:80:0.088:2
chr3	195507010	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,6:25:61:0.098:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195507011	rs367569617	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,11:30:101:0.111:2	0/1:46,13:30:62:0.220:2	0/1:17,5:31:22:0.227:2	0/1:140,18:30:158:0.114:2	0/1:148,19:30:167:0.114:2	0/1:100,27:31:127:0.213:2	0/1:144,26:32:170:0.153:2	0/1:122,38:31:160:0.238:2	0/1:85,9:32:94:0.096:2	0/1:90,16:32:106:0.151:2	0/1:78,28:31:106:0.264:2
chr3	195507020	rs201940326	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,7:32:115:0.061:2	0/1:66,4:32:70:0.057:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195507036	rs78811112	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:127,14:29:142:0.099:2	0/1:72,15:30:87:0.172:2	./.	0/1:148,16:27:164:0.098:2	0/1:150,16:28:166:0.096:2	0/1:127,25:30:152:0.164:2	0/1:145,18:30:163:0.110:2	0/1:99,51:30:150:0.340:2	0/1:75,30:30:106:0.286:2	0/1:102,8:28:110:0.073:2	0/1:109,21:28:130:0.162:2
chr3	195507049	rs76834296	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:140,8:28:148:0.054:2	0/1:82,9:28:91:0.099:2	./.	0/1:161,10:30:171:0.058:2	0/1:160,11:29:171:0.064:2	0/1:133,17:28:150:0.113:2	0/1:156,11:30:167:0.066:2	0/1:123,13:29:137:0.096:2	0/1:107,5:28:112:0.045:2	0/1:113,6:30:119:0.050:2	0/1:128,14:29:142:0.099:2
chr3	195507051	.	T	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:143,6:31:149:0.040:2	0/1:89,5:25:94:0.053:2	./.	./.	0/1:170,6:27:176:0.034:2	0/1:146,6:24:152:0.039:2	0/1:157,9:30:166:0.054:2	./.	0/1:103,9:29:113:0.080:2	./.	./.
chr3	195507053	rs201862576	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,9:28:135:0.067:2	0/1:104,8:30:112:0.071:2	./.	./.
chr3	195507059	rs76367261	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:121,5:30:127:0.040:2	0/1:93,6:22:99:0.061:2	0/1:28,4:25:32:0.125:2	./.	0/1:159,7:29:168:0.042:2	0/1:135,8:19:144:0.056:2	0/1:157,9:28:166:0.054:2	./.	0/1:102,9:25:112:0.081:2	./.	./.
chr3	195507062	rs199822551	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:107,24:31:131:0.183:2	0/1:71,29:30:100:0.290:2	0/1:15,18:30:33:0.545:2	0/1:125,34:30:159:0.214:2	0/1:116,44:30:160:0.275:2	0/1:117,25:30:142:0.176:2	0/1:114,52:30:166:0.313:2	0/1:76,58:30:134:0.433:2	0/1:61,43:32:105:0.413:2	./.	0/1:99,55:30:154:0.357:2
chr3	195507064	.	G	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:130,7:30:137:0.051:2	./.	./.	0/1:157,6:33:163:0.037:2	./.	0/1:137,8:34:145:0.055:2	0/1:157,11:33:168:0.065:2	./.	0/1:93,9:34:102:0.088:2	./.	0/1:148,5:28:153:0.033:2
chr3	195507077	rs76343663	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:129,9:27:138:0.065:2	./.	./.	0/1:158,6:33:164:0.037:2	0/1:156,15:29:171:0.088:2	0/1:139,7:31:146:0.048:2	0/1:146,15:32:161:0.093:2	0/1:124,6:32:130:0.046:2	0/1:90,5:32:95:0.053:2	0/1:107,7:30:114:0.061:2	0/1:145,8:32:153:0.052:2
chr3	195507086	rs79944988	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:117,10:25:128:0.079:2	0/1:89,8:23:97:0.082:2	./.	0/1:153,7:30:160:0.044:2	0/1:160,5:31:165:0.030:2	0/1:147,5:27:152:0.033:2	0/1:149,11:31:161:0.069:2	0/1:117,9:29:126:0.071:2	0/1:84,4:33:89:0.045:2	0/1:104,7:30:112:0.063:2	0/1:148,6:28:154:0.039:2
chr3	195507092	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:126,6:27:132:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:33:109:0.037:2	./.
chr3	195507097	rs76083001	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,8:30:131:0.061:2	0/1:82,12:31:94:0.128:2	./.	./.
chr3	195507107	rs201895754	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,61:28:113:0.540:2	0/1:42,49:29:94:0.538:2	0/1:20,16:27:37:0.444:2	0/1:105,53:29:159:0.335:2	0/1:112,52:29:165:0.317:2	0/1:39,114:30:155:0.745:2	0/1:91,72:30:164:0.442:2	0/1:81,55:29:138:0.404:2	0/1:80,11:30:94:0.121:2	0/1:69,35:31:104:0.337:2	0/1:82,69:30:153:0.457:2
chr3	195507126	rs446557	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,7:30:87:0.080:2	./.	./.
chr3	195507129	rs74201433	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:28,7:30:35:0.200:2	0/1:117,36:29:153:0.235:2	./.	./.	0/1:105,35:29:140:0.250:2	./.	./.	./.	0/1:108,32:29:140:0.229:2
chr3	195507132	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,64:30:147:0.435:2	./.	./.	./.	./.	./.
chr3	195507166	rs79358488	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,117:33:119:0.983:2	0/1:2,88:32:91:0.978:2	0/1:0,32:33:32:1.00:2	0/1:60,74:33:134:0.552:2	0/1:48,87:32:136:0.644:2	0/1:0,116:32:117:1.00:2	0/1:2,111:32:113:0.982:2	0/1:53,75:32:128:0.586:2	0/1:60,37:34:97:0.381:2	0/1:78,55:33:133:0.414:2	0/1:0,106:32:106:1.00:2
chr3	195507180	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,8:31:95:0.084:2	./.	./.	./.	./.
chr3	195507193	rs201474621	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:94,8:27:102:0.078:2	0/1:89,11:25:100:0.110:2	./.	./.	0/1:121,5:29:126:0.040:2	0/1:103,5:29:108:0.046:2	0/1:76,10:29:86:0.116:2	0/1:117,13:29:130:0.100:2	0/1:84,11:29:95:0.116:2	./.	0/1:86,7:28:93:0.075:2
chr3	195507203	rs199740120	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:33:105:0.038:2	0/1:100,8:28:108:0.074:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195507220	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,11:32:137:0.080:2	./.	./.	./.	./.
chr3	195507226	rs201269328	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,102:31:103:0.990:2	0/1:4,111:30:115:0.965:2	0/1:0,20:31:20:1.00:2	0/1:52,71:31:123:0.577:2	0/1:53,81:30:134:0.604:2	0/1:1,114:31:115:0.991:2	0/1:2,132:32:134:0.985:2	0/1:64,69:31:134:0.519:2	0/1:60,64:31:125:0.516:2	0/1:76,76:30:153:0.500:2	0/1:1,103:30:104:0.990:2
chr3	195507228	rs375915811	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:86,29:29:115:0.252:2	0/1:91,29:27:123:0.242:2	./.	0/1:109,19:29:128:0.148:2	0/1:124,14:27:138:0.101:2	0/1:84,40:29:124:0.323:2	0/1:116,36:31:152:0.237:2	0/1:123,24:30:147:0.163:2	0/1:114,25:30:139:0.180:2	0/1:141,18:31:159:0.113:2	0/1:92,20:30:113:0.179:2
chr3	195507242	rs112808291	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:95,46:30:141:0.326:2	0/1:88,46:28:134:0.343:2	0/1:24,5:28:29:0.172:2	0/1:111,31:30:142:0.218:2	0/1:122,37:30:159:0.233:2	0/1:75,68:30:143:0.476:2	0/1:84,70:30:154:0.455:2	0/1:124,32:28:156:0.205:2	0/1:131,40:30:171:0.234:2	0/1:126,31:29:157:0.197:2	0/1:95,38:31:133:0.286:2
chr3	195507251	rs201456607	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:136,8:29:144:0.056:2	0/1:132,14:27:146:0.096:2	0/1:27,7:32:34:0.206:2	0/1:136,10:32:146:0.068:2	0/1:157,11:31:168:0.065:2	0/1:130,18:30:148:0.122:2	0/1:153,11:30:164:0.067:2	0/1:147,14:33:161:0.087:2	0/1:158,16:32:174:0.092:2	./.	0/1:122,20:31:142:0.141:2
chr3	195507262	rs367631576	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:128,13:32:141:0.092:2	0/1:125,28:28:153:0.183:2	0/1:25,7:33:32:0.219:2	0/1:136,15:33:151:0.099:2	0/1:151,12:31:163:0.074:2	0/1:125,22:34:148:0.150:2	0/1:131,24:34:155:0.155:2	0/1:142,17:33:159:0.107:2	0/1:151,21:33:172:0.122:2	./.	0/1:113,29:33:142:0.204:2
chr3	195507323	rs201618076	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:101,10:28:113:0.090:2	0/1:100,19:29:119:0.160:2	./.	0/1:130,4:32:136:0.030:2	0/1:129,10:31:140:0.072:2	0/1:118,4:31:123:0.033:2	0/1:84,6:31:90:0.067:2	0/1:121,4:32:126:0.032:2	0/1:119,6:33:126:0.048:2	0/1:143,7:28:151:0.047:2	0/1:103,9:31:113:0.080:2
chr3	195507324	.	G	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:102,10:30:112:0.089:2	0/1:103,16:27:119:0.134:2	./.	./.	0/1:129,10:32:139:0.072:2	0/1:118,4:31:123:0.033:2	0/1:83,6:32:89:0.067:2	0/1:121,4:33:125:0.032:2	0/1:122,6:30:128:0.047:2	0/1:147,7:30:154:0.045:2	0/1:104,8:30:112:0.071:2
chr3	195507332	rs200058677	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:95,5:31:100:0.050:2	0/1:91,16:31:108:0.150:2	./.	./.	0/1:120,4:30:125:0.032:2	./.	0/1:78,5:33:83:0.060:2	0/1:114,4:32:118:0.034:2	./.	0/1:138,6:32:145:0.042:2	0/1:95,8:31:103:0.078:2
chr3	195507346	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:117,6:31:123:0.049:2	./.	./.	./.	./.	./.	./.	0/1:77,4:36:81:0.049:2
chr3	195507349	rs200575589	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,7:31:122:0.057:2	./.	./.	0/1:67,4:29:71:0.056:2	0/1:94,5:31:100:0.051:2	./.	./.	0/1:71,4:32:75:0.053:2
chr3	195507365	rs75737861	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,54:30:72:0.750:2	0/1:15,46:31:61:0.754:2	0/1:3,13:32:16:0.813:2	0/1:74,36:31:110:0.327:2	0/1:90,19:32:109:0.174:2	0/1:19,50:30:69:0.725:2	0/1:21,47:31:68:0.691:2	0/1:73,32:31:105:0.305:2	0/1:51,46:31:97:0.474:2	0/1:85,31:28:117:0.267:2	0/1:31,37:30:69:0.544:2
chr3	195507372	rs147904363	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,41:30:63:0.651:2	0/1:12,43:28:55:0.782:2	0/1:4,8:31:12:0.667:2	0/1:85,36:29:121:0.298:2	0/1:92,14:30:106:0.132:2	0/1:24,46:29:70:0.657:2	0/1:23,40:29:63:0.635:2	0/1:74,19:29:93:0.204:2	0/1:57,40:30:97:0.412:2	0/1:80,33:28:113:0.292:2	0/1:38,32:28:70:0.457:2
chr3	195507379	rs371423143	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:61,3:34:64:0.047:2	0/1:54,3:35:57:0.053:2	./.	./.	./.	./.	0/1:55,6:34:61:0.098:2	./.	0/1:93,5:34:98:0.051:2	./.	./.
chr3	195507385	rs199842409	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,15:31:62:0.242:2	0/1:45,8:28:53:0.151:2	0/1:7,4:31:11:0.364:2	0/1:105,17:27:122:0.139:2	./.	0/1:38,16:29:54:0.296:2	0/1:34,11:29:45:0.244:2	0/1:91,7:29:98:0.071:2	0/1:69,22:30:91:0.242:2	0/1:106,16:29:122:0.131:2	0/1:51,19:29:70:0.271:2
chr3	195507399	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,11:33:47:0.250:2	./.	0/1:6,7:33:13:0.538:2	0/1:100,20:30:123:0.167:2	0/1:95,11:32:108:0.104:2	0/1:30,15:31:45:0.333:2	0/1:34,13:32:50:0.277:2	0/1:88,18:31:106:0.170:2	0/1:64,14:32:78:0.179:2	0/1:90,15:31:106:0.143:2	0/1:36,27:31:65:0.429:2
chr3	195507406	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,7:33:57:0.123:2	./.	./.	./.	./.	./.
chr3	195507412	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,15:33:67:0.224:2	./.	./.	./.	./.	./.
chr3	195507461	rs200928587	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:84,13:28:97:0.134:2	0/1:62,8:31:70:0.114:2	0/1:26,6:30:32:0.188:2	0/1:126,15:31:141:0.106:2	0/1:135,12:29:147:0.082:2	0/1:105,16:29:121:0.132:2	0/1:93,21:30:114:0.184:2	0/1:134,12:30:146:0.082:2	0/1:136,17:31:153:0.111:2	0/1:125,10:27:135:0.074:2	0/1:99,12:30:111:0.108:2
chr3	195507472	rs368203789	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,32:32:150:0.213:2	./.	./.	./.	./.	./.	./.	./.
chr3	195507475	.	G	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:106,5:33:111:0.045:2	./.	0/1:35,4:31:39:0.103:2	0/1:145,4:33:149:0.027:2	./.	./.	./.	0/1:141,6:32:147:0.041:2	./.	./.	0/1:102,5:33:107:0.047:2
chr3	195507481	rs71187737	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,3:32:39:0.077:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195507491	rs150551454	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:84,38:29:122:0.311:2	0/1:47,27:30:76:0.365:2	0/1:25,16:29:41:0.390:2	0/1:107,39:30:146:0.267:2	0/1:122,29:28:152:0.192:2	0/1:98,37:29:135:0.274:2	0/1:85,45:30:130:0.346:2	0/1:113,33:31:146:0.226:2	0/1:120,29:29:150:0.195:2	0/1:125,26:29:151:0.172:2	./.
chr3	195507494	rs200217182	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:80,39:31:119:0.328:2	0/1:47,27:31:74:0.365:2	0/1:24,16:30:40:0.400:2	0/1:112,37:31:149:0.248:2	0/1:119,30:29:150:0.201:2	0/1:101,37:30:138:0.268:2	0/1:87,42:30:129:0.326:2	0/1:113,33:31:146:0.226:2	0/1:120,27:31:147:0.184:2	0/1:123,26:30:150:0.174:2	0/1:75,33:30:108:0.306:2
chr3	195507529	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,6:32:127:0.047:2	0/1:86,12:29:98:0.122:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195507543	rs201768289	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,23:31:122:0.189:2	0/1:81,25:30:106:0.236:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195507564	rs71187741	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,5:26:115:0.043:2	0/1:85,5:30:90:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195507591	rs399520	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,17:29:31:0.586:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195507592	.	G	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,5:33:139:0.036:2	0/1:129,5:31:134:0.037:2	0/1:124,7:32:131:0.053:2	0/1:121,6:29:127:0.047:2	./.	0/1:146,6:31:152:0.039:2	0/1:89,4:32:93:0.043:2	0/1:103,5:34:108:0.046:2
chr3	195507604	rs200566410	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:78,8:32:86:0.093:2	0/1:61,7:33:68:0.103:2	./.	./.	0/1:127,6:32:133:0.045:2	0/1:109,11:32:120:0.092:2	0/1:105,7:31:112:0.063:2	./.	0/1:143,4:32:147:0.027:2	0/1:88,4:31:92:0.043:2	0/1:96,4:32:100:0.040:2
chr3	195507605	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:126,4:31:130:0.031:2	./.	./.	./.	./.	./.	./.
chr3	195507653	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,8:31:130:0.062:2	./.	./.	./.	./.
chr3	195507660	rs369869516	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:32:69:0.058:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195507664	rs373793370	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,25:32:139:0.180:2	./.	./.	./.	./.	./.	./.	./.
chr3	195507666	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,5:26:118:0.042:2	./.	./.	./.	./.	./.
chr3	195507683	rs71187742	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:53,7:26:60:0.117:2	./.	0/1:118,8:28:127:0.063:2	0/1:143,6:30:149:0.040:2	0/1:93,11:28:104:0.106:2	0/1:112,12:30:124:0.097:2	./.	0/1:141,7:29:150:0.047:2	./.	./.
chr3	195507686	rs201750194	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:52,5:28:57:0.088:2	./.	0/1:125,7:30:133:0.053:2	0/1:146,6:28:152:0.039:2	0/1:94,8:32:102:0.078:2	0/1:112,11:31:123:0.089:2	./.	0/1:140,7:31:147:0.048:2	./.	0/1:92,7:31:100:0.071:2
chr3	195507694	rs369368122	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:79,19:32:98:0.194:2	0/1:51,12:32:63:0.190:2	0/1:14,5:32:19:0.263:2	0/1:116,19:31:135:0.141:2	0/1:138,15:32:154:0.098:2	0/1:89,23:31:112:0.205:2	0/1:99,27:31:126:0.214:2	0/1:138,15:30:153:0.098:2	0/1:138,14:30:152:0.092:2	0/1:106,11:30:119:0.094:2	0/1:90,18:33:108:0.167:2
chr3	195507702	rs372895165	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:77,23:29:100:0.230:2	0/1:55,16:29:71:0.225:2	0/1:14,6:32:20:0.300:2	0/1:114,20:31:134:0.149:2	0/1:142,18:31:160:0.113:2	0/1:85,29:29:114:0.254:2	0/1:101,34:29:135:0.252:2	0/1:137,23:29:160:0.144:2	0/1:138,21:31:159:0.132:2	0/1:102,19:29:121:0.157:2	0/1:88,27:26:116:0.235:2
chr3	195507717	rs376353447	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:84,27:31:111:0.243:2	0/1:58,26:31:84:0.310:2	0/1:13,14:30:27:0.519:2	0/1:109,29:30:138:0.210:2	0/1:129,28:30:157:0.178:2	0/1:72,50:28:122:0.410:2	0/1:95,50:30:145:0.345:2	0/1:129,25:31:154:0.162:2	0/1:134,22:31:156:0.141:2	0/1:90,40:30:130:0.308:2	0/1:79,35:30:115:0.307:2
chr3	195507721	rs199985629	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,14:30:115:0.122:2	0/1:73,10:32:83:0.120:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195507735	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,13:32:130:0.100:2	0/1:89,7:30:96:0.073:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195507750	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,13:31:137:0.096:2	./.
chr3	195507756	rs140571210	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:109,24:27:134:0.180:2	0/1:78,29:26:107:0.271:2	0/1:32,6:28:39:0.158:2	0/1:131,18:25:149:0.121:2	0/1:139,22:28:161:0.137:2	0/1:105,30:28:135:0.222:2	0/1:128,21:27:150:0.141:2	0/1:135,24:26:159:0.151:2	0/1:136,15:26:151:0.099:2	0/1:100,36:28:136:0.265:2	0/1:92,28:26:120:0.233:2
chr3	195507762	rs369666687	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:112,24:27:136:0.176:2	0/1:88,28:27:116:0.241:2	0/1:37,7:27:44:0.159:2	0/1:123,26:27:149:0.174:2	0/1:134,25:29:159:0.157:2	0/1:103,39:28:142:0.275:2	0/1:121,26:28:147:0.177:2	0/1:140,21:27:161:0.130:2	0/1:132,18:27:150:0.120:2	0/1:105,27:27:132:0.205:2	0/1:98,27:27:125:0.216:2
chr3	195507771	rs200652820	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:125,12:32:137:0.088:2	0/1:106,15:29:122:0.124:2	./.	./.	./.	0/1:129,6:26:135:0.044:2	./.	0/1:144,7:31:151:0.046:2	0/1:142,7:29:149:0.047:2	0/1:126,9:32:135:0.067:2	0/1:110,9:28:119:0.076:2
chr3	195507777	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,6:25:125:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195507778	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,9:30:139:0.065:2	0/1:117,7:30:124:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195507779	rs202084932	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:121,6:29:127:0.047:2	./.	./.	./.	./.	0/1:143,5:28:148:0.034:2	./.	./.	./.	0/1:130,5:31:135:0.037:2	0/1:116,5:27:121:0.041:2
chr3	195507780	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,5:27:127:0.039:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195507790	rs200005938	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,5:32:120:0.042:2	./.	./.	./.	./.	./.	./.	./.	0/1:118,17:31:135:0.126:2	./.
chr3	195507799	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,5:32:162:0.031:2	./.	./.	./.
chr3	195507817	rs200993341	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:118,8:31:127:0.063:2	0/1:117,9:29:127:0.071:2	./.	0/1:157,5:31:162:0.031:2	./.	0/1:140,11:33:151:0.073:2	0/1:145,5:33:150:0.033:2	./.	./.	./.	./.
chr3	195507827	rs373469782	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:68,52:29:120:0.433:2	0/1:68,54:28:123:0.443:2	0/1:39,37:30:76:0.487:2	0/1:110,41:31:151:0.272:2	0/1:151,23:31:174:0.132:2	0/1:71,64:31:135:0.474:2	0/1:94,49:31:143:0.343:2	0/1:138,24:30:162:0.148:2	0/1:130,27:30:157:0.172:2	0/1:107,33:30:140:0.236:2	0/1:68,55:31:123:0.447:2
chr3	195507836	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:125,4:32:129:0.031:2	./.	./.	./.	./.	./.	0/1:155,5:27:160:0.031:2	./.	./.	./.
chr3	195507846	rs377407201	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,59:31:122:0.484:2	0/1:60,66:32:126:0.524:2	0/1:42,39:31:82:0.481:2	0/1:101,46:32:147:0.313:2	0/1:136,29:31:166:0.176:2	0/1:69,73:32:142:0.514:2	0/1:81,73:32:154:0.474:2	0/1:123,38:31:161:0.236:2	0/1:122,27:33:149:0.181:2	0/1:105,51:31:156:0.327:2	0/1:61,74:31:135:0.548:2
chr3	195507858	rs74957513	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,70:32:126:0.556:2	0/1:48,71:31:120:0.597:2	0/1:41,43:31:84:0.512:2	0/1:93,51:31:144:0.354:2	0/1:122,42:32:164:0.256:2	0/1:47,86:31:133:0.647:2	0/1:65,76:32:141:0.539:2	0/1:121,44:32:165:0.267:2	0/1:107,38:33:145:0.262:2	0/1:103,52:32:157:0.335:2	0/1:53,87:32:140:0.621:2
chr3	195507915	rs71635073	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:117,21:29:138:0.152:2	0/1:126,20:25:146:0.137:2	0/1:64,13:29:78:0.169:2	0/1:143,8:22:151:0.053:2	0/1:156,14:25:171:0.082:2	0/1:130,18:29:148:0.122:2	0/1:147,22:27:169:0.130:2	0/1:150,17:29:167:0.102:2	0/1:150,15:27:165:0.091:2	0/1:147,14:28:161:0.087:2	0/1:127,24:27:151:0.159:2
chr3	195507925	rs71635074	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:115,11:31:126:0.087:2	0/1:118,13:28:132:0.099:2	0/1:60,5:30:65:0.077:2	0/1:136,6:28:143:0.042:2	0/1:155,12:30:167:0.072:2	0/1:128,13:31:141:0.092:2	0/1:143,15:31:158:0.095:2	0/1:147,12:31:159:0.075:2	0/1:148,12:32:160:0.075:2	0/1:155,7:29:162:0.043:2	0/1:125,12:28:137:0.088:2
chr3	195507927	rs201230361	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,23:31:65:0.354:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195507936	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,59:28:167:0.353:2	./.	./.	./.	./.	./.	./.
chr3	195507999	rs200187145	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:63,19:30:82:0.232:2	0/1:37,10:30:47:0.213:2	./.	0/1:100,13:32:115:0.115:2	0/1:125,13:30:138:0.094:2	0/1:64,19:29:83:0.229:2	0/1:64,24:30:89:0.273:2	0/1:95,13:31:108:0.120:2	0/1:95,12:31:107:0.112:2	0/1:126,7:32:134:0.053:2	0/1:80,26:28:106:0.245:2
chr3	195508005	rs79196348	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:59,9:35:69:0.132:2	0/1:40,6:35:46:0.130:2	./.	0/1:109,4:33:113:0.035:2	0/1:119,8:32:127:0.063:2	0/1:68,8:28:76:0.105:2	0/1:62,11:35:73:0.151:2	./.	0/1:98,8:35:106:0.075:2	./.	0/1:78,7:34:85:0.082:2
chr3	195508019	rs75238754	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:60,5:26:65:0.077:2	./.	0/1:30,3:34:33:0.091:2	./.	0/1:126,5:27:131:0.038:2	0/1:69,4:30:73:0.055:2	./.	0/1:98,5:29:105:0.049:2	./.	./.	./.
chr3	195508020	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,4:31:65:0.062:2	./.	0/1:30,3:31:33:0.091:2	0/1:118,8:28:126:0.063:2	./.	0/1:68,4:32:72:0.056:2	./.	0/1:102,4:30:106:0.038:2	./.	./.	./.
chr3	195508021	rs200804425	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,5:26:64:0.079:2	0/1:38,5:25:43:0.116:2	0/1:28,3:31:31:0.097:2	0/1:118,9:27:127:0.071:2	0/1:126,5:26:131:0.038:2	0/1:66,4:31:70:0.057:2	./.	0/1:102,6:30:108:0.056:2	./.	./.	./.
chr3	195508046	rs76458038	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,5:30:104:0.048:2	./.	./.	./.	./.	./.
chr3	195508051	.	G	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:69,7:26:76:0.092:2	./.	./.	0/1:139,5:29:144:0.035:2	./.	./.	./.	./.	./.	./.	0/1:99,4:30:103:0.039:2
chr3	195508091	rs62282474	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,45:29:138:0.331:2	0/1:77,59:28:138:0.434:2	./.	./.
chr3	195508094	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,26:29:124:0.211:2	./.	./.	./.	./.	./.	./.
chr3	195508101	rs76887830	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,18:30:68:0.265:2	0/1:28,18:32:46:0.391:2	0/1:33,3:32:36:0.083:2	0/1:133,16:30:149:0.107:2	0/1:80,50:31:130:0.385:2	0/1:97,41:32:138:0.297:2	0/1:104,41:32:146:0.283:2	0/1:116,29:33:145:0.200:2	0/1:117,26:31:143:0.182:2	0/1:124,24:32:148:0.162:2	0/1:109,21:29:130:0.162:2
chr3	195508108	rs374140595	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,19:30:71:0.268:2	0/1:29,14:27:43:0.326:2	0/1:34,6:29:40:0.150:2	0/1:137,15:28:152:0.099:2	0/1:118,18:27:136:0.132:2	./.	0/1:117,40:29:157:0.255:2	0/1:115,31:28:146:0.212:2	0/1:125,19:30:144:0.132:2	0/1:125,29:30:154:0.188:2	0/1:118,19:29:137:0.139:2
chr3	195508115	rs77145082	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:54,11:29:65:0.169:2	0/1:44,3:32:47:0.064:2	./.	0/1:129,21:29:150:0.140:2	0/1:122,14:30:136:0.103:2	0/1:108,33:29:143:0.234:2	0/1:136,28:33:164:0.171:2	0/1:143,6:31:150:0.040:2	0/1:128,15:28:143:0.105:2	0/1:144,13:30:157:0.083:2	0/1:119,13:30:132:0.098:2
chr3	195508117	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:110,14:27:125:0.113:2	./.	./.	./.	./.	./.	./.
chr3	195508118	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:114,15:27:129:0.116:2	./.	./.	./.	./.	./.	./.
chr3	195508127	rs201001648	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:45,20:32:65:0.308:2	0/1:36,14:32:50:0.280:2	./.	./.	./.	./.	0/1:105,50:31:155:0.323:2	0/1:108,39:32:147:0.265:2	./.	./.	./.
chr3	195508130	rs75675109	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,14:33:63:0.222:2	0/1:37,11:31:48:0.229:2	0/1:32,4:32:36:0.111:2	0/1:143,14:31:158:0.089:2	0/1:120,23:32:143:0.161:2	0/1:105,27:29:133:0.205:2	0/1:123,33:33:156:0.212:2	0/1:131,13:31:145:0.090:2	0/1:117,15:30:132:0.114:2	0/1:136,11:30:147:0.075:2	0/1:117,15:32:132:0.114:2
chr3	195508133	rs202065387	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:59,4:33:63:0.063:2	./.	./.	0/1:154,4:32:158:0.025:2	./.	0/1:128,4:31:133:0.030:2	0/1:151,7:32:158:0.044:2	0/1:139,7:33:146:0.048:2	./.	./.	0/1:127,7:28:134:0.052:2
chr3	195508139	rs368238743	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:138,5:32:143:0.035:2	0/1:121,5:27:129:0.040:2	0/1:144,6:25:150:0.040:2	./.	./.	./.	./.
chr3	195508163	rs200073211	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:57,11:32:69:0.162:2	0/1:56,9:31:65:0.138:2	./.	./.	./.	./.	./.	0/1:127,25:31:153:0.164:2	./.	./.	./.
chr3	195508167	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:64,9:32:73:0.123:2	0/1:59,7:31:66:0.106:2	./.	./.	./.	./.	./.	0/1:141,17:30:158:0.108:2	./.	./.	./.
chr3	195508175	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:66,10:32:76:0.132:2	0/1:59,6:31:65:0.092:2	./.	./.	./.	./.	./.	0/1:138,28:31:166:0.169:2	./.	./.	./.
chr3	195508178	rs201253018	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:62,10:31:72:0.139:2	0/1:59,6:30:65:0.092:2	./.	./.	./.	./.	./.	0/1:137,29:30:166:0.175:2	./.	./.	./.
chr3	195508194	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:63,32:30:95:0.337:2	0/1:54,13:26:67:0.194:2	./.	./.	./.	./.	./.	0/1:119,49:29:168:0.292:2	./.	./.	./.
chr3	195508215	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:165,5:27:170:0.029:2	./.	./.	./.	./.	./.	0/1:150,5:31:155:0.032:2
chr3	195508249	rs201846606	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:125,15:33:140:0.107:2	0/1:77,8:33:85:0.094:2	0/1:44,5:33:49:0.102:2	0/1:152,17:25:169:0.101:2	0/1:157,14:33:172:0.082:2	0/1:152,16:32:168:0.095:2	0/1:163,12:32:175:0.069:2	0/1:153,12:31:165:0.073:2	0/1:169,14:33:183:0.077:2	0/1:164,10:33:175:0.057:2	0/1:129,19:30:148:0.128:2
chr3	195508307	rs200780098	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:167,7:29:175:0.040:2	0/1:140,11:30:151:0.073:2	./.	./.	./.	./.	0/1:176,5:31:181:0.028:2	./.	./.	./.	./.
chr3	195508324	rs425562	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,8:29:177:0.045:2	0/1:139,15:32:154:0.097:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195508336	rs200518413	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:158,8:27:166:0.048:2	0/1:130,20:30:150:0.133:2	./.	0/1:175,5:30:180:0.028:2	0/1:157,11:29:168:0.065:2	./.	0/1:136,19:31:155:0.123:2	./.	0/1:163,7:28:170:0.041:2	0/1:171,5:30:176:0.028:2	0/1:156,5:31:161:0.031:2
chr3	195508343	rs396680	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:153,11:27:164:0.067:2	./.	0/1:142,19:29:162:0.118:2	./.	0/1:163,6:29:169:0.036:2	./.	0/1:159,5:30:164:0.030:2
chr3	195508372	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,6:31:165:0.036:2	./.	./.
chr3	195508393	rs201623571	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:129,7:31:137:0.051:2	0/1:92,6:32:99:0.061:2	0/1:50,5:29:55:0.091:2	0/1:167,5:27:172:0.029:2	0/1:148,9:31:157:0.057:2	0/1:139,11:30:150:0.073:2	0/1:125,7:32:132:0.053:2	0/1:156,5:31:161:0.031:2	0/1:151,8:32:159:0.050:2	0/1:141,4:33:145:0.028:2	0/1:126,10:28:136:0.074:2
chr3	195508402	rs199592769	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:130,6:27:136:0.044:2	0/1:75,10:32:85:0.118:2	./.	./.	0/1:151,10:31:161:0.062:2	./.	0/1:112,15:32:127:0.118:2	0/1:153,5:31:158:0.032:2	0/1:152,5:33:157:0.032:2	./.	0/1:126,5:34:132:0.038:2
chr3	195508406	rs200551462	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,5:29:51:0.098:2	./.	./.	0/1:134,6:30:140:0.043:2	0/1:124,4:33:128:0.031:2	./.	./.	./.	./.
chr3	195508451	rs201933946	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:99,22:28:121:0.182:2	./.	./.	./.	./.	0/1:99,19:30:118:0.161:2	./.
chr3	195508452	rs200683272	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:64,6:29:70:0.086:2	0/1:34,5:31:39:0.128:2	./.	./.	0/1:117,4:30:121:0.033:2	./.	0/1:50,9:29:59:0.153:2	0/1:141,5:29:146:0.034:2	./.	0/1:112,5:29:117:0.043:2	0/1:61,5:27:66:0.076:2
chr3	195508453	rs201319965	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,22:29:120:0.183:2	./.	./.	./.	./.	0/1:97,19:30:116:0.164:2	./.
chr3	195508454	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,22:29:119:0.185:2	./.	./.	./.	./.	0/1:96,19:30:115:0.165:2	./.
chr3	195508462	rs71187746	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:55,6:33:61:0.098:2	./.	./.	./.	0/1:130,4:32:135:0.030:2	./.	0/1:45,9:31:55:0.167:2	0/1:141,5:32:148:0.034:2	./.	0/1:112,5:32:119:0.043:2	./.
chr3	195508476	rs368202391	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,5:27:44:0.114:2
chr3	195508499	rs62282475	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,9:31:12:0.750:2	0/1:3,9:31:12:0.750:2	0/1:0,5:29:5:1.00:2	0/1:134,14:30:149:0.095:2	0/1:91,35:29:126:0.278:2	0/1:1,27:29:28:0.964:2	0/1:3,17:30:20:0.850:2	0/1:2,151:30:153:0.987:2	0/1:0,123:31:123:1.00:2	0/1:85,29:30:114:0.254:2	0/1:5,18:31:23:0.783:2
chr3	195508500	rs374619108	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,9:32:13:0.692:2	0/1:4,9:32:13:0.692:2	0/1:0,5:32:5:1.00:2	0/1:140,14:32:154:0.091:2	0/1:115,18:30:133:0.135:2	0/1:2,26:31:28:0.929:2	0/1:5,15:32:20:0.750:2	0/1:152,12:30:164:0.073:2	0/1:112,13:31:125:0.104:2	0/1:104,12:33:116:0.103:2	0/1:5,18:33:23:0.783:2
chr3	195508510	.	A	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,3:32:13:0.231:2	./.	./.	0/1:146,9:32:156:0.058:2	0/1:114,17:30:132:0.130:2	0/1:22,5:29:27:0.185:2	0/1:13,8:32:21:0.381:2	0/1:153,8:31:161:0.050:2	0/1:131,6:30:137:0.044:2	0/1:112,13:30:126:0.104:2	0/1:18,11:28:29:0.379:2
chr3	195508518	rs201195860	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,15:32:19:0.789:2	0/1:3,4:32:7:0.571:2	0/1:0,5:32:5:1.00:2	0/1:134,16:33:151:0.107:2	0/1:119,25:31:144:0.174:2	0/1:2,27:33:29:0.931:2	0/1:4,15:32:19:0.789:2	0/1:142,16:29:158:0.101:2	0/1:121,13:33:134:0.097:2	0/1:111,15:31:126:0.119:2	0/1:5,27:33:33:0.844:2
chr3	195508537	rs73891106	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:31:22:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,6:33:6:1.00:2	0/1:134,28:32:162:0.173:2	0/1:117,36:32:153:0.235:2	0/1:0,45:32:45:1.00:2	0/1:5,35:33:40:0.875:2	0/1:144,23:32:168:0.138:2	0/1:121,35:34:156:0.224:2	0/1:116,29:33:146:0.200:2	0/1:0,53:32:53:1.00:2
chr3	195508661	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:143,7:34:150:0.047:2	./.	0/1:156,7:31:163:0.043:2	0/1:170,8:29:178:0.045:2	./.	0/1:156,8:32:164:0.049:2	./.	0/1:60,7:28:68:0.104:2
chr3	195508722	rs201248411	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,5:30:169:0.030:2	./.	./.
chr3	195508758	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:183,5:29:188:0.027:2	./.	./.	./.	./.	./.	./.
chr3	195508796	rs370175156	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,69:31:167:0.416:2	0/1:84,31:34:115:0.270:2	./.	./.
chr3	195508804	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:31:160:0.025:2	./.	./.	./.	./.
chr3	195508812	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant5-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:42,4:31:46:0.087:2	./.	./.	./.	./.	0/1:146,5:30:151:0.033:2	./.	./.	./.	0/1:82,5:31:87:0.057:2
chr3	195508835	rs202015320	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:64,8:28:72:0.111:2	./.	./.	0/1:122,8:29:130:0.062:2	0/1:131,5:32:138:0.037:2	0/1:112,32:30:145:0.222:2	0/1:139,4:31:143:0.028:2	0/1:146,9:29:156:0.058:2	0/1:105,7:32:113:0.063:2	0/1:130,5:31:135:0.037:2	./.
chr3	195508839	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:120,5:28:125:0.040:2	0/1:146,4:32:150:0.027:2	0/1:138,5:28:143:0.035:2	./.	./.	./.	0/1:94,5:30:99:0.051:2
chr3	195508846	rs200224533	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:128,5:28:134:0.038:2	./.	0/1:147,4:32:152:0.026:2	./.	0/1:162,6:32:169:0.036:2	0/1:115,4:30:119:0.034:2	./.	./.
chr3	195508854	.	A	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:54,19:29:73:0.260:2	0/1:34,11:31:45:0.244:2	./.	0/1:130,7:32:137:0.051:2	0/1:115,11:31:126:0.087:2	0/1:128,7:29:135:0.052:2	0/1:116,8:25:124:0.065:2	0/1:155,5:32:161:0.031:2	0/1:105,13:29:118:0.110:2	0/1:130,7:28:137:0.051:2	0/1:98,15:30:113:0.133:2
chr3	195508855	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant5-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:41,3:32:44:0.068:2	./.	./.	./.	./.	0/1:119,6:27:125:0.048:2	./.	./.	./.	0/1:110,6:25:116:0.052:2
chr3	195508887	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:34:140:0.029:2	./.	./.	./.	./.
chr3	195508894	rs200570709	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:32:146:0.028:2
chr3	195508902	rs144571919	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:90,4:32:96:0.043:2	0/1:48,5:27:53:0.094:2	./.	./.	0/1:167,6:35:173:0.035:2	0/1:154,8:28:162:0.049:2	0/1:151,6:34:157:0.038:2	0/1:167,5:28:172:0.029:2	./.	./.	0/1:135,6:32:141:0.043:2
chr3	195508903	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:87,6:29:93:0.065:2	./.	./.	0/1:144,14:32:158:0.089:2	0/1:163,11:30:174:0.063:2	0/1:144,18:31:162:0.111:2	0/1:139,21:30:160:0.131:2	0/1:168,7:32:175:0.040:2	0/1:130,6:34:136:0.044:2	./.	./.
chr3	195508917	.	G	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,6:25:162:0.037:2	./.	0/1:149,6:29:155:0.039:2	./.	0/1:140,4:31:144:0.028:2
chr3	195508931	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,5:26:146:0.034:2
chr3	195508948	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:33:158:0.025:2	./.	./.	./.	./.
chr3	195508954	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,6:27:133:0.045:2
chr3	195508956	rs9759028	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:92,19:29:111:0.171:2	0/1:46,15:26:62:0.246:2	0/1:24,12:30:36:0.333:2	0/1:137,21:29:161:0.133:2	0/1:139,15:27:154:0.097:2	0/1:112,33:30:146:0.228:2	0/1:112,33:30:147:0.228:2	0/1:152,14:28:166:0.084:2	0/1:129,13:30:142:0.092:2	0/1:132,18:30:150:0.120:2	0/1:110,21:29:131:0.160:2
chr3	195508959	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,5:32:165:0.030:2	./.	./.	./.
chr3	195508969	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,5:27:136:0.037:2
chr3	195508971	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,5:29:141:0.036:2	./.	./.	./.	./.	0/1:132,6:29:138:0.043:2
chr3	195508979	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,5:28:153:0.033:2	./.	0/1:126,6:28:134:0.045:2	./.	./.	./.	./.	0/1:123,7:25:132:0.054:2
chr3	195508982	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,5:32:93:0.054:2	./.	0/1:23,3:32:27:0.115:2	0/1:136,11:32:147:0.075:2	0/1:133,9:31:142:0.063:2	0/1:106,18:31:124:0.145:2	0/1:107,16:31:123:0.130:2	0/1:140,9:30:150:0.060:2	0/1:134,7:29:142:0.050:2	./.	./.
chr3	195508984	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,7:34:119:0.059:2	./.	./.	./.	./.	0/1:117,5:33:122:0.041:2
chr3	195508986	rs370883367	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,27:30:89:0.303:2	0/1:39,26:29:65:0.400:2	0/1:12,12:27:24:0.500:2	0/1:94,46:26:140:0.329:2	0/1:92,45:28:137:0.328:2	0/1:60,54:28:114:0.474:2	0/1:69,44:28:113:0.389:2	0/1:99,55:27:155:0.357:2	0/1:102,36:30:138:0.261:2	0/1:101,46:29:148:0.313:2	0/1:44,75:29:119:0.630:2
chr3	195508995	rs79549335	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:57,4:27:61:0.066:2	./.	./.	./.	./.	0/1:101,6:24:107:0.056:2	./.	./.	0/1:148,5:27:153:0.033:2	./.
chr3	195508997	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:127,4:32:131:0.031:2	0/1:97,13:27:110:0.118:2	0/1:99,9:26:108:0.083:2	0/1:143,5:30:148:0.034:2	0/1:127,6:31:133:0.045:2	./.	./.
chr3	195509006	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,7:32:87:0.082:2	0/1:88,7:27:95:0.074:2	0/1:144,5:31:149:0.034:2	./.	./.	./.
chr3	195509012	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:33:89:0.045:2	./.	0/1:156,4:32:160:0.025:2	./.	./.	./.
chr3	195509027	rs74441604	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,4:29:63:0.063:2	./.	./.	./.	./.	0/1:77,6:29:84:0.072:2	./.	./.	./.	./.	0/1:91,7:19:98:0.071:2
chr3	195509029	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,4:31:58:0.069:2	./.	./.	./.	./.	0/1:78,5:29:83:0.060:2	0/1:80,5:25:85:0.059:2	./.	./.	0/1:147,6:28:153:0.039:2	./.
chr3	195509030	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:56,4:28:60:0.067:2	./.	./.	./.	./.	./.	0/1:80,5:29:85:0.059:2	./.	./.	0/1:147,6:32:153:0.039:2	./.
chr3	195509036	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,14:31:62:0.226:2	0/1:42,8:30:50:0.160:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195509038	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:155,5:30:160:0.031:2	./.	./.	./.	./.	./.	0/1:91,4:32:96:0.042:2
chr3	195509045	rs75309583	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:38,19:31:57:0.333:2	0/1:28,16:31:45:0.364:2	./.	0/1:123,6:26:130:0.047:2	./.	./.	0/1:74,9:27:85:0.108:2	./.	./.	0/1:128,7:28:136:0.052:2	./.
chr3	195509052	rs77818558	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:31:61:0.066:2	0/1:38,7:19:46:0.156:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195509086	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:69,8:33:77:0.104:2	./.	./.	0/1:144,7:33:152:0.046:2	./.	0/1:72,8:30:80:0.100:2	./.	0/1:153,6:32:159:0.038:2	0/1:117,4:33:121:0.033:2	0/1:133,13:33:146:0.089:2	0/1:85,12:34:98:0.124:2
chr3	195509094	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:72,5:32:77:0.065:2	0/1:57,4:32:61:0.066:2	./.	0/1:148,5:28:153:0.033:2	./.	0/1:82,10:31:92:0.109:2	./.	0/1:157,6:29:163:0.037:2	0/1:119,5:31:124:0.040:2	./.	0/1:95,6:31:101:0.059:2
chr3	195509095	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,5:31:75:0.067:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195509099	rs71319804	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:48,19:30:70:0.284:2	0/1:44,14:30:58:0.241:2	./.	0/1:130,19:24:151:0.128:2	0/1:152,8:25:160:0.050:2	0/1:68,21:27:91:0.236:2	0/1:95,9:27:105:0.087:2	0/1:143,17:28:160:0.106:2	0/1:107,9:30:117:0.078:2	0/1:123,19:28:144:0.134:2	0/1:74,19:28:96:0.204:2
chr3	195509102	rs199531700	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:32:152:0.026:2	./.
chr3	195509106	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:31:85:0.047:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,5:29:116:0.043:2
chr3	195509108	rs200863118	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,5:32:90:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195509127	rs200879287	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,9:25:103:0.087:2	0/1:71,7:30:79:0.090:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195509142	rs12487058	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,8:29:91:0.089:2	./.	./.	./.	./.	./.	0/1:167,5:30:172:0.029:2	./.	./.	./.
chr3	195509171	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:131,9:33:142:0.064:2	./.	./.	0/1:165,8:32:173:0.046:2	0/1:167,7:30:174:0.040:2	0/1:164,7:33:171:0.041:2	0/1:156,5:34:161:0.031:2	0/1:177,5:30:182:0.027:2	./.	0/1:159,10:33:169:0.059:2	0/1:146,7:31:153:0.046:2
chr3	195509180	rs201718547	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,7:32:173:0.040:2	./.	0/1:172,6:32:178:0.034:2	./.	./.	0/1:138,5:31:143:0.035:2
chr3	195509182	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,6:33:149:0.040:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195509188	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:32:154:0.026:2	./.	./.	./.	0/1:144,4:31:149:0.027:2
chr3	195509196	rs76126602	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:121,18:29:139:0.129:2	0/1:105,10:32:115:0.087:2	0/1:39,4:29:43:0.093:2	0/1:162,7:28:169:0.041:2	0/1:161,7:29:168:0.042:2	0/1:166,5:32:172:0.029:2	0/1:138,7:29:145:0.048:2	./.	0/1:155,17:31:174:0.099:2	0/1:148,12:31:160:0.075:2	0/1:122,21:30:143:0.147:2
chr3	195509209	rs79077485	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:117,19:30:136:0.140:2	0/1:99,8:30:107:0.075:2	./.	0/1:160,9:28:169:0.053:2	0/1:158,10:28:168:0.060:2	0/1:157,16:28:173:0.092:2	0/1:129,9:25:138:0.065:2	0/1:161,12:24:174:0.069:2	./.	0/1:148,16:29:164:0.098:2	0/1:130,14:29:144:0.097:2
chr3	195509212	rs200749420	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,42:29:173:0.243:2	0/1:109,52:30:161:0.323:2	./.	./.
chr3	195509235	rs77084193	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,14:27:106:0.133:2	0/1:66,10:31:76:0.132:2	0/1:33,4:29:38:0.108:2	0/1:148,7:29:155:0.045:2	0/1:152,6:24:159:0.038:2	0/1:161,13:28:174:0.075:2	0/1:115,9:28:124:0.073:2	0/1:149,8:31:157:0.051:2	./.	0/1:143,11:31:154:0.071:2	0/1:104,7:29:112:0.063:2
chr3	195509278	rs77344255	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,5:28:164:0.030:2	./.	0/1:140,6:33:146:0.041:2	./.
chr3	195509287	rs201610800	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,16:31:67:0.239:2	0/1:29,12:24:42:0.293:2	./.	0/1:142,25:28:167:0.150:2	0/1:148,19:25:167:0.114:2	0/1:102,42:30:145:0.292:2	0/1:82,11:28:94:0.118:2	0/1:142,19:25:162:0.118:2	0/1:119,13:27:132:0.098:2	0/1:118,19:25:137:0.139:2	0/1:50,26:29:76:0.342:2
chr3	195509305	rs372364062	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:88,6:31:94:0.064:2	./.	./.	0/1:174,6:31:180:0.033:2	./.	./.	0/1:131,4:30:135:0.030:2	0/1:149,6:26:155:0.039:2	./.	0/1:153,4:31:158:0.025:2	0/1:91,11:29:102:0.108:2
chr3	195509306	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:90,6:31:96:0.063:2	./.	./.	0/1:178,6:32:184:0.033:2	./.	./.	0/1:133,4:31:137:0.029:2	0/1:149,5:29:155:0.032:2	./.	0/1:156,5:31:161:0.031:2	0/1:92,10:31:102:0.098:2
chr3	195509308	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,5:28:157:0.032:2	./.	./.	./.
chr3	195509331	rs369416005	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,9:26:109:0.083:2	0/1:57,11:26:68:0.162:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195509353	rs200052949	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,12:23:132:0.091:2	0/1:108,11:30:119:0.092:2	./.	./.
chr3	195509354	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,12:30:134:0.090:2	0/1:110,11:33:121:0.091:2	./.	./.
chr3	195509374	rs62282479	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,13:34:155:0.084:2	0/1:118,7:33:125:0.056:2	./.	./.
chr3	195509379	rs201189686	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,17:29:158:0.108:2	0/1:122,8:31:131:0.062:2	./.	./.
chr3	195509388	rs372565113	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:108,14:30:122:0.115:2	0/1:62,9:31:71:0.127:2	./.	./.	./.	./.	./.	0/1:153,4:31:157:0.025:2	./.	./.	./.
chr3	195509394	rs377471271	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,25:31:161:0.155:2	0/1:121,17:30:138:0.123:2	./.	./.
chr3	195509401	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:49,5:30:54:0.093:2	./.	./.	./.	0/1:104,31:30:136:0.230:2	./.	0/1:164,6:30:170:0.035:2	./.	./.	./.
chr3	195509402	rs74772699	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,12:31:110:0.109:2	0/1:44,10:31:54:0.185:2	./.	./.	./.	0/1:105,31:30:136:0.228:2	0/1:132,5:28:137:0.036:2	0/1:162,10:31:172:0.058:2	./.	./.	0/1:130,5:28:136:0.037:2
chr3	195509423	rs199992184	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,5:32:95:0.053:2	0/1:45,3:32:48:0.063:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195509429	rs28542401	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:8,82:32:90:0.911:2	0/1:7,35:31:42:0.833:2	0/1:1,24:32:25:0.960:2	0/1:70,99:32:169:0.586:2	0/1:80,78:32:158:0.494:2	0/1:27,100:32:127:0.787:2	0/1:3,127:31:130:0.977:2	0/1:58,99:32:158:0.631:2	0/1:39,81:33:120:0.675:2	0/1:65,70:32:135:0.519:2	0/1:4,109:32:113:0.965:2
chr3	195509443	rs74585045	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,22:31:85:0.259:2	0/1:26,12:30:38:0.316:2	0/1:12,9:32:21:0.429:2	0/1:141,22:30:163:0.135:2	0/1:139,23:32:162:0.142:2	0/1:99,28:29:127:0.220:2	0/1:109,38:32:147:0.259:2	0/1:140,35:30:175:0.200:2	0/1:92,20:31:112:0.179:2	0/1:126,17:32:143:0.119:2	0/1:92,24:31:116:0.207:2
chr3	195509476	rs75221587	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,38:31:99:0.384:2	0/1:18,28:30:46:0.609:2	0/1:7,8:29:15:0.533:2	0/1:122,34:29:157:0.218:2	0/1:142,36:30:178:0.202:2	0/1:100,38:29:138:0.275:2	0/1:117,48:31:166:0.291:2	0/1:138,37:31:175:0.211:2	0/1:87,25:32:112:0.223:2	0/1:131,24:30:155:0.155:2	0/1:86,41:31:127:0.323:2
chr3	195509497	rs201925754	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:166,8:27:174:0.046:2	./.	./.	./.	0/1:166,8:30:174:0.046:2	0/1:110,5:27:115:0.043:2	./.	0/1:147,8:30:155:0.052:2
chr3	195509498	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:164,7:29:172:0.041:2	./.	./.	./.	0/1:168,7:30:175:0.040:2	0/1:112,5:30:117:0.043:2	./.	0/1:148,8:32:156:0.051:2
chr3	195509515	rs28438604	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,75:30:126:0.600:2	0/1:29,42:30:72:0.592:2	0/1:11,12:31:24:0.522:2	0/1:103,64:30:168:0.383:2	0/1:115,69:29:184:0.375:2	0/1:50,79:29:129:0.612:2	0/1:72,87:29:159:0.547:2	0/1:93,71:30:164:0.433:2	0/1:75,50:31:125:0.400:2	0/1:114,56:30:172:0.329:2	0/1:75,84:30:160:0.528:2
chr3	195509518	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,7:30:138:0.051:2	./.	./.	./.	./.	./.
chr3	195509525	.	G	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:141,11:27:152:0.072:2	0/1:78,5:29:83:0.060:2	./.	0/1:160,9:28:169:0.053:2	0/1:172,11:29:183:0.060:2	0/1:140,5:29:145:0.034:2	0/1:163,9:29:172:0.052:2	0/1:157,9:30:166:0.054:2	0/1:138,12:26:150:0.080:2	0/1:169,5:28:174:0.029:2	0/1:149,9:27:158:0.057:2
chr3	195509545	rs200425615	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:138,7:31:145:0.048:2	0/1:93,4:30:98:0.041:2	./.	0/1:157,7:27:164:0.043:2	./.	./.	0/1:166,5:32:171:0.029:2	./.	0/1:146,7:32:153:0.046:2	./.	./.
chr3	195509563	rs28605870	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,7:30:142:0.049:2	./.	0/1:148,12:31:161:0.075:2	0/1:143,10:31:153:0.065:2	0/1:144,5:30:149:0.034:2	0/1:130,5:26:135:0.037:2
chr3	195509566	rs200444826	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,11:27:136:0.081:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195509573	rs28510889	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:112,15:30:127:0.118:2	0/1:73,14:26:87:0.161:2	./.	0/1:147,15:27:162:0.093:2	0/1:173,9:31:182:0.049:2	0/1:128,15:29:143:0.105:2	./.	0/1:127,33:32:160:0.206:2	0/1:128,23:33:152:0.152:2	./.	0/1:123,12:28:135:0.089:2
chr3	195509585	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,11:30:116:0.095:2	0/1:76,13:27:89:0.146:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195509593	rs200748699	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:153,6:28:159:0.038:2	0/1:162,5:28:167:0.030:2	./.	0/1:162,6:29:169:0.036:2	0/1:160,6:23:166:0.036:2	./.	./.	0/1:134,6:29:140:0.043:2
chr3	195509603	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,5:27:146:0.035:2
chr3	195509606	rs200244334	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:34:109:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195509614	rs433169	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:112,4:30:116:0.034:2	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:33:161:0.025:2	./.	0/1:141,6:30:148:0.041:2
chr3	195509622	rs199744021	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,6:24:160:0.038:2	./.	./.	./.	./.	0/1:144,7:29:151:0.046:2
chr3	195509630	rs61200084	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,5:28:149:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr3	195509641	rs28414759	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:128,7:32:135:0.052:2	0/1:86,8:30:94:0.085:2	./.	0/1:139,13:30:152:0.086:2	0/1:149,18:31:167:0.108:2	0/1:157,6:26:163:0.037:2	0/1:161,14:30:176:0.080:2	0/1:142,18:30:160:0.113:2	0/1:152,12:32:164:0.073:2	0/1:148,8:30:156:0.051:2	0/1:133,11:32:145:0.076:2
chr3	195509650	.	A	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:138,9:29:147:0.061:2	0/1:150,11:29:161:0.068:2	0/1:155,7:22:162:0.043:2	0/1:160,7:31:167:0.042:2	0/1:154,13:31:167:0.078:2	0/1:154,9:29:163:0.055:2	0/1:150,5:31:155:0.032:2	0/1:141,7:32:148:0.047:2
chr3	195509651	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:120,15:31:135:0.111:2	0/1:80,14:31:94:0.149:2	0/1:39,5:31:44:0.114:2	0/1:132,13:32:147:0.090:2	0/1:138,21:32:159:0.132:2	0/1:136,25:31:161:0.155:2	0/1:147,18:31:165:0.109:2	0/1:144,24:31:168:0.143:2	0/1:145,14:32:160:0.088:2	0/1:143,13:31:157:0.083:2	0/1:121,26:30:147:0.177:2
chr3	195509676	rs372419355	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:110,26:25:136:0.191:2	0/1:71,30:27:101:0.297:2	0/1:41,9:30:50:0.180:2	0/1:122,27:30:150:0.181:2	0/1:136,28:27:164:0.171:2	0/1:125,40:27:165:0.242:2	0/1:151,27:29:178:0.152:2	0/1:118,43:27:161:0.267:2	0/1:130,27:28:157:0.172:2	0/1:131,26:28:157:0.166:2	0/1:103,32:29:135:0.237:2
chr3	195509689	rs59620726	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:109,27:30:137:0.199:2	0/1:74,29:29:103:0.282:2	0/1:42,11:30:53:0.208:2	0/1:114,35:30:149:0.235:2	0/1:142,32:28:174:0.184:2	0/1:128,41:28:169:0.243:2	0/1:145,36:30:181:0.199:2	0/1:126,40:29:166:0.241:2	0/1:126,26:29:152:0.171:2	0/1:139,25:29:164:0.152:2	0/1:83,41:29:124:0.331:2
chr3	195509702	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:32:177:0.023:2	./.	./.	./.	./.
chr3	195509717	rs201054395	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:111,13:28:124:0.105:2	0/1:70,15:27:85:0.176:2	0/1:50,6:25:56:0.107:2	0/1:134,18:29:153:0.118:2	0/1:157,11:27:168:0.065:2	0/1:146,13:29:160:0.082:2	0/1:159,7:29:166:0.042:2	0/1:138,17:29:155:0.110:2	0/1:133,9:29:145:0.063:2	0/1:143,18:28:161:0.112:2	0/1:116,19:28:136:0.141:2
chr3	195509718	rs28385894	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,5:26:149:0.034:2	./.	./.	./.	0/1:151,4:32:155:0.026:2	0/1:140,4:32:144:0.028:2	./.	./.
chr3	195509747	rs199954941	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:93,5:33:98:0.051:2	./.	./.	0/1:144,4:33:148:0.027:2	./.	./.	0/1:128,4:32:132:0.030:2	./.	./.	./.	0/1:118,4:32:122:0.033:2
chr3	195509756	rs28750097	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:84,10:33:94:0.106:2	0/1:64,5:28:69:0.072:2	0/1:44,4:30:48:0.083:2	0/1:130,7:31:137:0.051:2	0/1:144,8:32:152:0.053:2	0/1:123,11:33:134:0.082:2	0/1:114,6:34:120:0.050:2	0/1:118,7:32:125:0.056:2	0/1:127,11:34:138:0.080:2	0/1:140,5:32:145:0.034:2	0/1:115,14:32:129:0.109:2
chr3	195509769	rs77947599	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,39:30:95:0.411:2	0/1:35,30:29:65:0.462:2	0/1:25,16:30:41:0.390:2	0/1:97,34:29:131:0.260:2	0/1:105,46:28:152:0.305:2	0/1:104,38:29:142:0.268:2	0/1:78,52:29:130:0.400:2	0/1:81,37:30:118:0.314:2	0/1:104,42:31:146:0.288:2	0/1:97,38:29:135:0.281:2	0/1:78,56:27:134:0.418:2
chr3	195509784	rs61099195	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,25:29:98:0.258:2	0/1:53,23:28:76:0.303:2	0/1:32,12:27:44:0.273:2	0/1:111,21:29:132:0.159:2	0/1:107,30:28:137:0.219:2	0/1:103,31:28:134:0.231:2	0/1:85,43:28:128:0.336:2	0/1:107,25:29:132:0.189:2	0/1:123,29:31:152:0.191:2	0/1:113,30:30:143:0.210:2	0/1:106,37:28:144:0.259:2
chr3	195509795	rs201497773	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:86,16:28:104:0.157:2	0/1:62,17:28:79:0.215:2	0/1:33,5:31:39:0.132:2	0/1:115,18:29:133:0.135:2	0/1:127,25:30:153:0.164:2	0/1:122,21:30:143:0.147:2	0/1:92,36:31:128:0.281:2	0/1:114,13:28:129:0.102:2	0/1:127,20:30:148:0.136:2	0/1:124,17:30:143:0.121:2	0/1:113,22:29:137:0.163:2
chr3	195509805	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,5:32:104:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195509817	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,5:28:137:0.036:2
chr3	195509820	rs71635077	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,109:27:120:0.908:2	0/1:17,92:27:109:0.844:2	0/1:5,35:29:40:0.875:2	0/1:57,78:28:135:0.578:2	0/1:84,76:26:160:0.475:2	0/1:3,130:29:133:0.977:2	0/1:8,116:28:124:0.935:2	0/1:4,127:27:131:0.969:2	0/1:7,137:29:144:0.951:2	0/1:62,73:29:135:0.541:2	0/1:6,131:28:137:0.956:2
chr3	195509832	rs199909366	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,5:29:154:0.032:2	./.	./.	./.	./.
chr3	195509843	rs200739317	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,21:29:157:0.136:2	./.	./.	./.	./.	./.
chr3	195509861	rs375079438	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:124,16:31:140:0.114:2	0/1:114,23:26:137:0.168:2	0/1:59,4:28:63:0.063:2	0/1:156,6:33:162:0.037:2	./.	0/1:147,12:28:159:0.075:2	0/1:167,6:30:173:0.035:2	./.	0/1:149,7:27:156:0.045:2	0/1:161,7:31:168:0.042:2	0/1:147,10:30:157:0.064:2
chr3	195509879	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:111,33:30:144:0.229:2	0/1:99,23:30:122:0.189:2	0/1:53,14:28:67:0.209:2	0/1:149,24:32:173:0.139:2	0/1:166,18:31:184:0.098:2	0/1:130,25:31:155:0.161:2	0/1:143,35:31:178:0.197:2	0/1:148,24:31:172:0.140:2	0/1:145,19:32:164:0.116:2	0/1:151,18:30:169:0.107:2	0/1:127,40:31:167:0.240:2
chr3	195509880	rs201889850	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:110,31:26:143:0.220:2	0/1:97,21:27:119:0.178:2	0/1:53,14:28:67:0.209:2	0/1:150,24:27:174:0.138:2	0/1:167,18:24:186:0.097:2	0/1:130,23:26:154:0.150:2	0/1:143,32:26:178:0.183:2	0/1:146,22:26:170:0.131:2	0/1:148,19:29:167:0.114:2	0/1:149,18:25:167:0.108:2	0/1:127,37:27:164:0.226:2
chr3	195509886	rs369181624	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:138,10:25:148:0.068:2	0/1:129,9:25:138:0.065:2	0/1:55,11:26:66:0.167:2	0/1:164,12:25:176:0.068:2	0/1:180,8:22:188:0.043:2	0/1:123,29:26:152:0.191:2	0/1:167,11:25:178:0.062:2	0/1:166,7:25:173:0.040:2	0/1:164,8:26:172:0.047:2	0/1:168,9:25:177:0.051:2	0/1:161,14:24:175:0.080:2
chr3	195509909	rs373296068	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,11:29:142:0.077:2	0/1:113,9:31:122:0.074:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,6:28:172:0.035:2
chr3	195509918	rs200091411	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,11:30:142:0.077:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195509924	rs201093934	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:66,4:31:71:0.057:2	0/1:172,4:32:176:0.023:2	0/1:186,5:30:191:0.026:2	0/1:121,20:30:141:0.142:2	./.	0/1:167,4:32:171:0.023:2	./.	0/1:181,7:33:188:0.037:2	0/1:166,4:32:170:0.024:2
chr3	195509925	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,5:31:148:0.034:2	0/1:119,4:31:123:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195509939	rs202039836	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,8:31:175:0.046:2	0/1:170,9:32:180:0.050:2	./.	./.
chr3	195509941	rs199849290	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,8:33:177:0.045:2	0/1:167,10:33:177:0.056:2	./.	./.
chr3	195509954	rs201165125	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,6:31:112:0.054:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195509955	rs71635078	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,95:27:133:0.714:2	0/1:48,59:26:107:0.551:2	0/1:21,39:28:60:0.650:2	0/1:105,62:28:167:0.371:2	0/1:135,60:29:195:0.308:2	0/1:37,108:28:146:0.745:2	0/1:64,113:29:177:0.638:2	0/1:42,132:29:174:0.759:2	0/1:48,120:29:168:0.714:2	0/1:128,56:27:184:0.304:2	0/1:50,107:28:157:0.682:2
chr3	195509957	rs201699932	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:125,7:30:132:0.053:2	0/1:101,10:21:111:0.090:2	./.	0/1:166,6:31:172:0.035:2	./.	./.	0/1:173,10:30:183:0.055:2	0/1:173,8:28:181:0.044:2	0/1:166,10:33:176:0.057:2	./.	0/1:155,9:32:164:0.055:2
chr3	195509964	rs71635079	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,127:29:128:1.00:2	0/1:0,107:29:107:1.00:2	0/1:0,59:29:59:1.00:2	0/1:78,93:29:171:0.544:2	0/1:113,82:28:195:0.421:2	0/1:0,148:29:148:1.00:2	0/1:7,173:29:180:0.961:2	0/1:3,172:29:175:0.983:2	0/1:5,168:29:173:0.971:2	0/1:95,95:29:190:0.500:2	0/1:1,158:29:159:0.994:2
chr3	195509974	rs200426444	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:103,33:32:136:0.243:2	0/1:66,36:30:103:0.353:2	0/1:36,23:32:59:0.390:2	0/1:146,30:31:176:0.170:2	0/1:174,19:31:193:0.098:2	0/1:114,52:31:166:0.313:2	0/1:126,52:31:178:0.292:2	0/1:138,39:32:177:0.220:2	0/1:126,41:32:167:0.246:2	0/1:157,32:32:189:0.169:2	0/1:112,54:32:166:0.325:2
chr3	195509987	rs28420515	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,23:29:160:0.144:2	./.	./.	./.	./.	./.
chr3	195510011	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:95,4:32:99:0.040:2	./.	./.	./.	./.	0/1:171,8:30:179:0.045:2	0/1:158,10:29:168:0.060:2	./.	0/1:175,6:31:182:0.033:2	0/1:152,6:33:158:0.038:2
chr3	195510030	rs374297426	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:133,6:29:139:0.043:2	0/1:87,9:25:96:0.094:2	./.	0/1:165,10:29:175:0.057:2	0/1:175,8:28:183:0.044:2	0/1:165,8:27:173:0.046:2	0/1:174,7:27:181:0.039:2	0/1:155,4:31:159:0.025:2	0/1:159,7:30:166:0.042:2	0/1:170,10:26:180:0.056:2	0/1:142,15:30:157:0.096:2
chr3	195510059	rs202157220	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:31:135:0.030:2	0/1:89,7:23:97:0.073:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195510062	rs200366897	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,5:31:160:0.031:2	0/1:163,5:29:168:0.030:2	0/1:153,6:31:159:0.038:2	./.	./.	./.
chr3	195510068	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:31:160:0.025:2	./.	0/1:177,7:23:184:0.038:2	./.
chr3	195510087	rs200190375	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:32:127:0.031:2	0/1:104,5:28:109:0.046:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195510094	rs7375093	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:119,7:32:126:0.056:2	0/1:92,16:26:108:0.148:2	./.	./.	0/1:155,6:31:161:0.037:2	./.	./.	./.	./.	./.	0/1:134,7:24:141:0.050:2
chr3	195510108	rs371875294	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:112,6:26:119:0.051:2	./.	0/1:131,13:29:144:0.090:2	0/1:166,5:32:171:0.029:2	0/1:145,8:31:153:0.052:2	0/1:138,12:29:150:0.080:2	0/1:134,6:32:140:0.043:2	./.	./.	./.
chr3	195510121	rs7374898	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:112,11:31:123:0.089:2	0/1:102,18:29:121:0.150:2	./.	./.	0/1:162,6:30:168:0.036:2	./.	./.	./.	0/1:122,12:24:134:0.090:2	./.	./.
chr3	195510122	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:119,7:30:126:0.056:2	./.	./.	./.	./.	./.	0/1:138,4:32:142:0.028:2	./.	0/1:127,4:30:133:0.031:2	0/1:143,4:31:147:0.027:2	./.
chr3	195510131	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,5:28:125:0.042:2	./.	./.
chr3	195510134	rs7375096	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:98,15:28:113:0.133:2	0/1:94,18:26:112:0.161:2	./.	0/1:122,16:28:138:0.116:2	0/1:136,14:25:150:0.093:2	./.	0/1:121,15:27:136:0.110:2	./.	0/1:118,14:26:132:0.106:2	0/1:135,9:29:144:0.063:2	0/1:110,9:26:119:0.076:2
chr3	195510149	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:110,4:31:114:0.035:2	./.	./.	0/1:111,10:30:122:0.083:2	./.	./.	0/1:123,8:31:131:0.061:2	./.	./.	0/1:132,4:33:136:0.029:2	0/1:110,5:29:115:0.043:2
chr3	195510156	rs201141296	G	A,C	.	PASS	AC=3,1;AF=0.250,0.083;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	0/2:21:108:0.065:2	./.	0/1:29:46:0.174:2	./.	./.	./.	0/1:31:124:0.138:2	./.	./.	0/1:31:127:0.315:2	./.
chr3	195510169	rs201935809	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:123,6:27:129:0.047:2	./.	./.	./.	./.	./.	./.
chr3	195510175	rs199532860	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,7:24:117:0.060:2	./.	./.	./.	./.	./.	./.	./.
chr3	195510192	rs367755087	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:63,7:26:70:0.100:2	./.	./.	0/1:83,8:28:91:0.088:2	0/1:82,8:31:90:0.089:2	0/1:67,26:30:93:0.280:2	0/1:71,21:29:92:0.228:2	0/1:76,12:29:88:0.136:2	0/1:59,5:34:64:0.078:2	0/1:72,6:28:78:0.077:2	0/1:60,12:28:72:0.167:2
chr3	195510194	rs200763896	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:59,6:29:65:0.092:2	./.	./.	0/1:81,8:27:89:0.090:2	0/1:82,8:29:90:0.089:2	0/1:67,26:30:93:0.280:2	0/1:69,21:30:90:0.233:2	0/1:72,13:28:85:0.153:2	0/1:58,5:30:63:0.079:2	0/1:67,6:30:73:0.082:2	0/1:59,11:30:70:0.157:2
chr3	195510203	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,11:25:79:0.141:2	./.	./.	./.	./.	./.	./.
chr3	195510206	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,12:31:80:0.150:2	./.	./.	./.	./.	./.	./.
chr3	195510217	rs145853807	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,52:32:56:0.929:2	0/1:1,29:32:30:0.967:2	0/1:0,17:32:17:1.00:2	0/1:6,85:32:91:0.934:2	0/1:21,50:31:71:0.704:2	0/1:0,109:32:109:1.00:2	0/1:3,104:32:107:0.972:2	0/1:11,69:31:80:0.863:2	0/1:4,41:32:45:0.911:2	0/1:9,59:33:68:0.868:2	0/1:5,66:31:71:0.930:2
chr3	195510228	rs199812923	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,15:31:51:0.294:2	0/1:18,5:32:24:0.217:2	0/1:9,5:32:14:0.357:2	0/1:53,26:30:80:0.329:2	0/1:48,23:30:72:0.324:2	0/1:95,19:30:114:0.167:2	0/1:86,19:31:105:0.181:2	0/1:58,14:28:72:0.194:2	0/1:35,5:33:40:0.125:2	0/1:46,17:30:63:0.270:2	0/1:69,11:31:80:0.138:2
chr3	195510238	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,14:32:59:0.237:2	0/1:21,3:31:24:0.125:2	0/1:9,4:32:13:0.308:2	0/1:58,18:31:76:0.237:2	0/1:67,13:31:80:0.163:2	0/1:114,16:31:130:0.123:2	0/1:99,17:32:117:0.147:2	0/1:65,11:31:76:0.145:2	0/1:46,4:32:50:0.080:2	0/1:50,14:32:64:0.219:2	0/1:71,13:32:85:0.155:2
chr3	195510341	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:163,5:33:168:0.030:2	0/1:165,4:33:169:0.024:2	./.	0/1:158,5:34:163:0.031:2	./.	./.	0/1:96,6:32:102:0.059:2
chr3	195510372	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,5:34:162:0.031:2	./.	./.	./.
chr3	195510402	rs200937434	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,5:32:64:0.078:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195510476	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,51:33:137:0.372:2	0/1:55,34:34:89:0.382:2	./.	./.
chr3	195510490	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:31:149:0.027:2	./.	./.	./.	./.
chr3	195510492	rs202140763	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:23,4:25:27:0.148:2	./.	./.	./.	0/1:116,9:27:125:0.072:2	./.	./.	./.	./.	./.
chr3	195510515	rs202191853	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,12:28:111:0.109:2	./.	0/1:91,21:30:112:0.188:2	./.	0/1:134,8:32:142:0.056:2	./.	0/1:89,7:29:96:0.073:2	0/1:72,4:32:76:0.053:2
chr3	195510519	rs368129417	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:43,3:33:46:0.065:2	0/1:24,4:31:28:0.143:2	./.	./.	./.	./.	./.	./.	./.	0/1:85,5:29:90:0.056:2	0/1:79,4:31:83:0.048:2
chr3	195510526	rs192630598	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,4:33:114:0.035:2	./.	./.	./.	./.	./.	0/1:84,4:30:88:0.045:2	./.
chr3	195510534	.	A	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:40,5:31:45:0.111:2	0/1:18,8:31:26:0.308:2	./.	0/1:99,8:30:107:0.075:2	0/1:121,6:32:127:0.047:2	./.	0/1:112,7:31:120:0.059:2	0/1:124,6:32:130:0.046:2	0/1:72,6:29:78:0.077:2	0/1:73,9:32:82:0.110:2	0/1:81,7:29:88:0.080:2
chr3	195510535	.	G	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:42,4:30:46:0.087:2	0/1:21,6:30:27:0.222:2	./.	./.	0/1:124,4:31:128:0.031:2	./.	./.	./.	./.	0/1:78,5:31:83:0.060:2	0/1:83,4:30:87:0.046:2
chr3	195510607	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:29:61:0.066:2	./.	./.	./.	./.
chr3	195510636	rs368501323	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:28,10:28:38:0.263:2	0/1:23,6:26:29:0.207:2	./.	./.	0/1:44,16:27:60:0.267:2	0/1:54,37:28:91:0.407:2	./.	0/1:61,29:27:90:0.322:2	0/1:32,25:27:57:0.439:2	./.	./.
chr3	195510655	rs372590482	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,27:29:64:0.429:2	0/1:26,17:31:43:0.395:2	0/1:7,4:32:11:0.364:2	0/1:63,32:31:95:0.337:2	0/1:49,28:30:77:0.364:2	0/1:63,61:31:125:0.492:2	0/1:69,48:32:119:0.410:2	0/1:50,45:30:95:0.474:2	0/1:24,36:32:60:0.600:2	0/1:35,28:31:63:0.444:2	0/1:40,39:32:79:0.494:2
chr3	195510706	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:30:99:0.040:2	./.	./.
chr3	195510707	rs142559357	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,16:30:99:0.163:2	0/1:56,19:27:75:0.253:2	0/1:20,6:31:26:0.231:2	0/1:89,22:29:112:0.198:2	0/1:93,21:31:115:0.184:2	0/1:69,49:32:120:0.415:2	0/1:64,62:30:126:0.492:2	0/1:52,45:30:97:0.464:2	0/1:66,29:26:95:0.305:2	0/1:92,14:30:107:0.132:2	0/1:65,38:29:104:0.369:2
chr3	195510709	rs74504395	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,5:27:118:0.043:2	./.	./.	./.	./.	./.
chr3	195510718	rs80005560	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:102,11:30:113:0.097:2	0/1:68,12:32:80:0.150:2	0/1:18,4:32:22:0.182:2	0/1:86,10:31:96:0.104:2	0/1:70,15:27:85:0.176:2	0/1:77,28:31:105:0.267:2	0/1:78,38:32:116:0.328:2	0/1:63,26:31:89:0.292:2	0/1:84,15:31:99:0.152:2	0/1:92,8:28:100:0.080:2	0/1:70,30:31:100:0.300:2
chr3	195510732	rs80145081	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:68,17:31:88:0.200:2	0/1:67,12:28:81:0.152:2	0/1:21,8:31:29:0.276:2	0/1:55,46:32:102:0.455:2	0/1:66,30:30:96:0.313:2	0/1:72,48:31:120:0.400:2	0/1:91,41:31:132:0.311:2	0/1:57,35:31:92:0.380:2	0/1:67,25:32:93:0.272:2	0/1:78,32:31:112:0.291:2	0/1:70,29:32:100:0.293:2
chr3	195510745	rs2453138	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,25:29:89:0.281:2	0/1:65,13:30:79:0.167:2	0/1:27,10:28:37:0.270:2	0/1:50,75:29:125:0.600:2	0/1:67,56:29:123:0.455:2	0/1:88,50:29:138:0.362:2	0/1:92,52:29:144:0.361:2	0/1:61,59:29:120:0.492:2	0/1:62,36:30:98:0.367:2	0/1:75,40:29:115:0.348:2	0/1:82,34:29:116:0.293:2
chr3	195510749	rs62282480	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,57:31:97:0.588:2	0/1:36,48:31:84:0.571:2	0/1:27,11:30:39:0.289:2	0/1:44,89:32:133:0.669:2	0/1:59,67:31:126:0.532:2	0/1:81,58:31:139:0.417:2	0/1:95,56:31:151:0.371:2	0/1:62,60:31:123:0.492:2	0/1:57,41:32:98:0.418:2	0/1:72,53:32:125:0.424:2	0/1:77,45:31:123:0.369:2
chr3	195510762	rs2911273	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:76,33:27:109:0.303:2	0/1:64,34:27:98:0.347:2	0/1:19,26:27:45:0.578:2	0/1:119,25:25:144:0.174:2	0/1:92,44:26:136:0.324:2	0/1:75,68:27:143:0.476:2	0/1:80,80:27:160:0.500:2	0/1:97,42:26:139:0.302:2	0/1:79,35:27:114:0.307:2	0/1:97,34:25:131:0.260:2	0/1:71,65:27:136:0.478:2
chr3	195510766	rs79949955	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,6:29:144:0.042:2	./.
chr3	195510767	rs200958281	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,32:31:124:0.258:2	0/1:89,13:30:102:0.127:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195510773	rs2911272	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:89,50:32:140:0.360:2	0/1:45,54:31:99:0.545:2	0/1:28,33:32:61:0.541:2	0/1:117,40:33:157:0.255:2	0/1:89,61:32:150:0.407:2	0/1:71,92:32:163:0.564:2	0/1:81,86:32:167:0.515:2	0/1:99,53:32:152:0.349:2	0/1:95,45:33:140:0.321:2	0/1:111,45:32:156:0.288:2	0/1:77,72:32:149:0.483:2
chr3	195510786	rs2948677	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:96,54:29:150:0.360:2	0/1:64,44:26:108:0.407:2	0/1:39,39:29:78:0.500:2	0/1:124,36:30:160:0.225:2	0/1:103,51:30:154:0.331:2	0/1:74,88:29:162:0.543:2	0/1:88,85:30:173:0.491:2	0/1:106,60:30:166:0.361:2	0/1:114,40:29:154:0.260:2	0/1:123,37:29:160:0.231:2	0/1:78,78:29:156:0.500:2
chr3	195510827	rs413807	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:117,50:29:167:0.299:2	0/1:120,50:30:171:0.294:2	0/1:61,68:29:129:0.527:2	0/1:107,74:30:181:0.409:2	0/1:152,35:30:188:0.187:2	0/1:115,73:30:188:0.388:2	0/1:109,84:30:193:0.435:2	0/1:127,55:30:182:0.302:2	0/1:137,47:31:184:0.255:2	0/1:104,70:30:174:0.402:2	0/1:106,72:29:179:0.404:2
chr3	195510900	rs201192572	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,56:30:163:0.344:2	0/1:121,42:30:163:0.258:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195510910	.	G	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:158,4:32:162:0.025:2	./.	./.	0/1:166,14:32:180:0.078:2	./.	0/1:167,12:31:179:0.067:2	0/1:175,10:33:185:0.054:2	0/1:170,10:31:180:0.056:2	0/1:170,4:34:174:0.023:2	0/1:172,6:33:178:0.034:2	./.
chr3	195510912	rs375349481	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:152,7:28:160:0.044:2	./.	./.	0/1:164,16:29:181:0.089:2	./.	0/1:163,11:32:177:0.063:2	0/1:169,11:32:181:0.061:2	0/1:166,10:31:176:0.057:2	0/1:162,4:33:168:0.024:2	0/1:169,7:28:176:0.040:2	./.
chr3	195510943	rs201313220	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,46:31:166:0.277:2	0/1:122,42:29:164:0.256:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195510996	rs199626832	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,40:29:191:0.209:2	./.	./.	./.	./.
chr3	195511043	rs75030029	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,26:26:145:0.181:2	0/1:121,17:28:139:0.123:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195511051	rs74867514	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,8:31:149:0.054:2	0/1:127,5:30:133:0.038:2	./.	./.
chr3	195511070	rs75075507	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,17:32:161:0.106:2	0/1:137,12:34:149:0.081:2	./.	./.
chr3	195511076	rs201112002	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,18:32:148:0.122:2	0/1:125,17:31:142:0.120:2	./.	./.
chr3	195511091	rs202183030	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,6:24:164:0.037:2	./.	./.	./.	./.	./.
chr3	195511102	rs200212097	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,34:32:178:0.191:2	0/1:140,32:33:172:0.186:2	./.	./.
chr3	195511116	rs200940092	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:157,8:28:166:0.048:2	./.	./.	./.	./.	./.	./.	0/1:152,39:30:191:0.204:2	0/1:142,38:28:180:0.211:2	./.	./.
chr3	195511123	rs201766776	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,10:33:85:0.118:2	./.	./.	./.	./.	./.	./.	./.	0/1:143,36:33:179:0.201:2
chr3	195511131	rs71321826	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:33:166:0.024:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195511139	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,5:31:157:0.032:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195511142	rs430037	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:118,54:29:172:0.314:2	0/1:111,53:29:164:0.323:2	0/1:52,43:30:96:0.453:2	0/1:147,30:29:177:0.169:2	0/1:146,45:30:191:0.236:2	0/1:151,39:30:190:0.205:2	0/1:110,78:30:188:0.415:2	0/1:166,24:31:190:0.126:2	0/1:162,26:31:188:0.138:2	0/1:150,44:30:194:0.227:2	0/1:114,62:30:176:0.352:2
chr3	195511204	rs423290	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,14:32:148:0.095:2	0/1:131,16:30:147:0.109:2	./.	./.	./.	0/1:168,6:28:174:0.034:2	./.	./.	0/1:170,6:33:176:0.034:2	0/1:171,9:31:181:0.050:2	0/1:154,7:30:161:0.043:2
chr3	195511225	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,5:30:171:0.029:2	./.
chr3	195511238	rs3103956	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,6:30:135:0.044:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195511273	rs199533374	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:113,12:27:125:0.096:2	./.	./.	0/1:132,18:28:150:0.120:2	0/1:151,9:30:160:0.056:2	./.	0/1:139,7:31:146:0.048:2	0/1:142,16:31:158:0.101:2	0/1:137,16:30:154:0.105:2	0/1:150,9:26:159:0.057:2	0/1:117,11:30:128:0.086:2
chr3	195511283	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,9:27:109:0.083:2	0/1:92,10:25:111:0.098:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195511294	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,8:30:156:0.051:2	./.	./.
chr3	195511310	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,6:28:121:0.050:2	0/1:100,8:32:108:0.074:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195511316	rs79528160	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,5:30:129:0.039:2	0/1:104,7:31:112:0.063:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195511331	rs56359992	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,122:31:124:1.00:2	0/1:0,103:31:103:1.00:2	0/1:0,36:32:36:1.00:2	0/1:42,119:32:161:0.739:2	0/1:68,94:30:162:0.580:2	0/1:0,133:32:133:1.00:2	0/1:0,154:31:154:1.00:2	./.	0/1:0,140:32:140:1.00:2	0/1:36,104:31:140:0.743:2	0/1:0,122:31:122:1.00:2
chr3	195511333	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,8:30:150:0.054:2	./.
chr3	195511336	rs201458132	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,49:31:132:0.374:2	0/1:65,39:29:105:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195511358	rs77614482	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,4:32:28:0.143:2	0/1:143,7:29:150:0.047:2	./.	0/1:117,12:31:129:0.093:2	0/1:140,10:28:150:0.067:2	0/1:161,10:31:171:0.058:2	./.	./.	0/1:106,6:28:112:0.054:2
chr3	195511364	rs75187745	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:31:169:0.024:2	./.	./.	./.
chr3	195511367	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,7:33:127:0.055:2
chr3	195511369	rs9755674	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:31:114:0.035:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195511370	rs201616880	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,12:31:138:0.088:2	0/1:106,10:31:116:0.086:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195511380	rs199758145	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,14:30:127:0.111:2	0/1:101,8:31:109:0.073:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195511390	rs75692609	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,14:30:110:0.130:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195511396	rs201453005	G	T,A	.	PASS	AC=2,2;AF=0.167,0.167;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	./.	0/2:30:120:0.108:2	0/2:28:105:0.067:2	./.	./.	./.	./.	0/1:32:153:0.039:2	0/1:32:175:0.023:2	./.	./.	./.
chr3	195511403	rs78846267	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:161,5:31:166:0.030:2	./.	0/1:108,10:24:118:0.085:2	0/1:153,7:28:160:0.044:2	0/1:166,6:26:172:0.035:2	./.	0/1:135,8:29:144:0.056:2	0/1:120,7:27:127:0.055:2
chr3	195511412	rs199878638	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:32:113:0.035:2	0/1:153,4:33:157:0.025:2	0/1:167,5:27:172:0.029:2	./.	./.	0/1:139,4:32:143:0.028:2
chr3	195511431	rs201715837	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,11:31:71:0.155:2	0/1:55,19:32:74:0.257:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195511438	rs201323238	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,6:29:74:0.081:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195511446	rs78227722	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:46,11:28:57:0.193:2	0/1:41,14:31:55:0.255:2	./.	./.	./.	./.	0/1:138,18:30:156:0.115:2	0/1:70,65:31:135:0.481:2	0/1:59,53:33:112:0.473:2	0/1:127,5:25:136:0.038:2	0/1:134,6:30:140:0.043:2
chr3	195511447	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:151,6:30:157:0.038:2	0/1:145,6:29:151:0.040:2	0/1:91,4:31:95:0.042:2	./.	./.	0/1:106,4:32:110:0.036:2	./.	./.
chr3	195511465	rs200967978	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:47,9:30:56:0.161:2	0/1:45,7:28:52:0.135:2	./.	0/1:131,10:30:141:0.071:2	./.	0/1:85,9:29:94:0.096:2	./.	0/1:56,40:28:96:0.417:2	0/1:49,43:30:92:0.467:2	0/1:126,8:29:134:0.060:2	0/1:111,18:29:129:0.140:2
chr3	195511474	rs77680876	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,5:21:50:0.100:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195511486	rs202186297	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,5:33:133:0.038:2	./.
chr3	195511493	rs375953305	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:130,5:30:135:0.037:2	./.	0/1:94,8:31:103:0.078:2	0/1:50,16:31:66:0.242:2	0/1:57,17:33:74:0.230:2	0/1:121,4:32:125:0.032:2	0/1:74,18:30:92:0.196:2
chr3	195511499	rs79232940	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,5:25:61:0.083:2	0/1:52,13:28:65:0.200:2	./.	./.
chr3	195511500	rs368930530	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:32:80:0.050:2
chr3	195511502	rs77345343	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,5:31:56:0.091:2	0/1:48,13:31:61:0.213:2	./.	./.
chr3	195511513	rs75599746	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:61,7:27:69:0.103:2	0/1:41,9:28:50:0.180:2	./.	./.	./.	./.	0/1:59,10:27:69:0.145:2	0/1:36,33:29:69:0.478:2	0/1:26,33:31:59:0.559:2	0/1:113,5:30:118:0.042:2	0/1:48,14:27:62:0.226:2
chr3	195511523	rs142766505	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,8:28:9:0.889:2	0/1:74,24:28:100:0.245:2	0/1:84,32:30:120:0.276:2	0/1:6,37:30:43:0.860:2	0/1:11,48:30:59:0.814:2	0/1:72,23:30:97:0.242:2	./.	./.	0/1:14,28:29:43:0.667:2
chr3	195511525	rs199709753	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,32:29:64:0.508:2	0/1:24,20:29:45:0.455:2	0/1:1,8:32:9:0.889:2	0/1:79,22:30:101:0.218:2	0/1:91,33:30:126:0.266:2	0/1:8,33:31:41:0.805:2	0/1:11,47:30:58:0.810:2	0/1:79,24:31:103:0.233:2	0/1:71,13:32:84:0.155:2	0/1:89,25:28:114:0.219:2	0/1:14,28:29:42:0.667:2
chr3	195511526	rs200787582	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,32:29:65:0.492:2	0/1:24,21:29:45:0.467:2	0/1:1,8:31:9:0.889:2	0/1:81,21:31:102:0.206:2	0/1:94,32:30:126:0.254:2	0/1:8,33:30:41:0.805:2	0/1:10,47:30:57:0.825:2	0/1:80,24:29:104:0.231:2	0/1:76,14:32:90:0.156:2	0/1:88,27:30:115:0.235:2	0/1:14,28:29:42:0.667:2
chr3	195511534	rs75459784	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:69,10:29:83:0.127:2	0/1:45,12:30:58:0.211:2	./.	./.	0/1:130,5:31:137:0.037:2	./.	0/1:71,4:33:77:0.053:2	0/1:111,6:33:119:0.051:2	0/1:99,4:30:105:0.039:2	0/1:118,4:33:124:0.033:2	0/1:57,7:30:65:0.109:2
chr3	195511556	rs79961534	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,12:31:120:0.100:2	./.	0/1:58,8:31:66:0.121:2	0/1:79,13:32:92:0.141:2	0/1:119,7:30:126:0.056:2	./.	0/1:120,7:31:127:0.055:2	0/1:82,9:24:91:0.099:2
chr3	195511575	rs74422441	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:92,16:32:108:0.148:2	0/1:78,11:33:89:0.124:2	0/1:27,6:33:33:0.182:2	0/1:110,29:33:139:0.209:2	0/1:142,13:33:155:0.084:2	0/1:68,36:32:104:0.346:2	0/1:72,36:32:108:0.333:2	0/1:140,12:32:152:0.079:2	0/1:128,12:35:140:0.086:2	0/1:114,23:32:137:0.168:2	0/1:87,26:32:113:0.230:2
chr3	195511609	rs71321837	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:150,4:32:154:0.026:2	./.	./.	./.	./.	0/1:137,8:29:145:0.055:2	0/1:128,9:30:137:0.066:2	./.	./.	0/1:149,6:32:155:0.039:2	0/1:125,10:27:136:0.074:2
chr3	195511637	rs71187734	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:150,9:17:159:0.057:2	./.	./.	./.	./.	0/1:162,5:32:167:0.030:2	./.	./.	./.	./.
chr3	195511638	rs201456042	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,57:30:161:0.354:2	0/1:97,62:29:159:0.390:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195511643	rs200040077	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,10:30:52:0.192:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195511668	rs3107748	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:112,41:31:153:0.268:2	0/1:115,36:30:151:0.238:2	0/1:40,17:29:57:0.298:2	0/1:133,44:30:177:0.249:2	0/1:140,45:30:185:0.243:2	0/1:131,44:30:175:0.251:2	0/1:135,46:30:181:0.254:2	0/1:138,43:30:181:0.238:2	0/1:147,30:31:178:0.169:2	0/1:122,52:31:175:0.299:2	0/1:98,66:31:165:0.402:2
chr3	195511686	rs201950480	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:42,12:27:54:0.222:2	0/1:107,63:30:170:0.371:2	./.	./.	0/1:144,35:30:180:0.196:2	./.	./.	0/1:123,48:30:171:0.281:2	0/1:154,14:31:168:0.083:2
chr3	195511690	rs199920095	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,47:30:151:0.311:2	0/1:106,49:30:155:0.316:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195511705	rs71187735	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,17:29:187:0.091:2	0/1:177,10:30:187:0.053:2	./.	./.
chr3	195511740	rs201069012	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,48:28:160:0.300:2	0/1:102,44:28:146:0.301:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195511743	rs67146868	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,17:30:164:0.104:2	0/1:120,26:29:146:0.178:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195511774	rs365279	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:136,6:24:144:0.042:2	./.	./.	./.	./.	./.	./.	0/1:175,9:25:184:0.049:2	./.	./.
chr3	195511780	rs391928	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:119,28:30:147:0.190:2	0/1:129,16:30:145:0.110:2	0/1:34,10:31:44:0.227:2	0/1:150,29:30:179:0.162:2	0/1:150,38:30:188:0.202:2	./.	0/1:138,54:30:192:0.281:2	0/1:163,28:31:191:0.147:2	0/1:167,18:31:185:0.097:2	0/1:140,35:31:175:0.200:2	0/1:119,50:31:169:0.296:2
chr3	195511783	rs75997030	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,50:29:137:0.368:2	0/1:89,46:29:136:0.341:2	./.	./.	./.	./.	./.	./.	0/1:175,4:32:180:0.022:2	./.	./.
chr3	195511788	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:32:139:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195511801	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,6:30:182:0.033:2	./.	./.	./.	./.
chr3	195511810	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:131,7:31:138:0.051:2	./.	./.	./.	./.	./.	0/1:171,10:32:181:0.055:2	./.	./.	./.	./.
chr3	195511814	rs72499650	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,46:29:134:0.343:2	0/1:91,48:27:139:0.345:2	0/1:22,23:29:45:0.511:2	0/1:67,101:28:168:0.601:2	0/1:107,79:29:186:0.425:2	0/1:56,107:28:163:0.656:2	0/1:87,94:29:181:0.519:2	0/1:142,39:28:181:0.215:2	0/1:132,46:28:178:0.258:2	0/1:105,65:28:170:0.382:2	0/1:67,98:28:166:0.594:2
chr3	195511822	rs200327729	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,15:30:133:0.114:2	0/1:119,24:29:144:0.168:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195511836	rs75072939	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:92,34:26:126:0.270:2	0/1:98,38:26:137:0.279:2	./.	0/1:165,8:23:173:0.046:2	./.	./.	0/1:171,8:30:179:0.045:2	0/1:177,6:28:184:0.033:2	0/1:173,7:24:180:0.039:2	0/1:160,6:28:166:0.036:2	./.
chr3	195511849	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:172,7:30:179:0.039:2	./.	0/1:169,4:32:174:0.023:2	./.	./.	./.	./.
chr3	195511850	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:172,5:30:177:0.028:2	./.	./.	./.	./.	./.	./.
chr3	195511859	rs75861043	T	C,G	.	PASS	AC=4,1;AF=0.267,0.067;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	0/2:19:135:0.060:2	./.	0/1:27:160:0.032:2	./.	0/1:25:160:0.039:2	0/1:33:170:0.024:2	./.	./.	./.	0/1:32:144:0.028:2
chr3	195511877	rs55824312	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:117,23:28:140:0.164:2	0/1:126,17:29:143:0.119:2	0/1:31,17:29:48:0.354:2	0/1:141,19:28:161:0.119:2	0/1:137,30:28:167:0.180:2	0/1:124,35:29:159:0.220:2	0/1:128,40:28:169:0.238:2	0/1:151,24:31:175:0.137:2	0/1:141,23:30:164:0.140:2	0/1:139,23:29:162:0.142:2	0/1:102,41:30:143:0.287:2
chr3	195511884	rs71617318	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:128,4:31:132:0.030:2	./.	0/1:146,8:30:155:0.052:2	0/1:161,5:29:166:0.030:2	0/1:150,6:32:156:0.038:2	0/1:167,5:33:172:0.029:2	./.	0/1:163,8:32:171:0.047:2	./.	0/1:130,8:26:138:0.058:2
chr3	195511891	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,8:25:176:0.045:2	./.	./.	./.	./.
chr3	195511897	rs71187736	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:129,12:28:141:0.085:2	./.	./.	0/1:143,9:28:152:0.059:2	0/1:152,12:29:164:0.073:2	0/1:135,21:28:156:0.135:2	0/1:156,19:31:175:0.109:2	./.	0/1:168,5:29:173:0.029:2	./.	0/1:123,16:29:139:0.115:2
chr3	195511911	rs200732241	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:111,14:32:125:0.112:2	0/1:115,11:29:126:0.087:2	0/1:46,7:31:53:0.132:2	0/1:146,4:32:150:0.027:2	0/1:157,4:32:161:0.025:2	0/1:130,13:32:144:0.091:2	./.	./.	./.	./.	0/1:114,10:33:124:0.081:2
chr3	195511918	rs200673547	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,23:30:130:0.180:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195511925	rs78031084	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:114,14:30:128:0.109:2	0/1:95,25:30:120:0.208:2	./.	0/1:145,7:32:152:0.046:2	0/1:147,11:32:159:0.070:2	0/1:123,9:25:132:0.068:2	0/1:157,12:29:170:0.071:2	./.	0/1:162,6:31:169:0.036:2	0/1:144,7:30:151:0.046:2	0/1:109,13:30:123:0.107:2
chr3	195511937	rs201509113	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,26:30:132:0.198:2	0/1:92,20:30:112:0.179:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195511945	rs201304037	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:123,7:31:130:0.054:2	./.	0/1:40,6:28:46:0.130:2	0/1:145,11:27:159:0.071:2	0/1:157,14:30:171:0.082:2	0/1:114,18:29:132:0.136:2	0/1:153,22:28:175:0.126:2	0/1:169,8:29:177:0.045:2	0/1:166,5:30:171:0.029:2	./.	0/1:117,20:29:137:0.146:2
chr3	195511959	rs369770584	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,25:31:113:0.223:2	0/1:80,23:30:104:0.223:2	0/1:24,14:31:38:0.368:2	0/1:108,40:31:148:0.270:2	0/1:126,42:31:168:0.250:2	0/1:66,58:31:124:0.468:2	0/1:92,74:31:166:0.446:2	0/1:147,22:31:169:0.130:2	0/1:139,27:32:166:0.163:2	0/1:130,29:32:159:0.182:2	0/1:79,42:31:121:0.347:2
chr3	195511973	rs2688551	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:105,7:31:112:0.063:2	0/1:87,13:29:102:0.130:2	0/1:37,3:34:40:0.075:2	0/1:137,10:32:147:0.068:2	./.	0/1:121,8:33:129:0.062:2	./.	./.	0/1:158,6:29:164:0.037:2	./.	0/1:112,4:34:117:0.034:2
chr3	195511983	rs200576215	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,27:29:107:0.257:2	0/1:75,22:32:97:0.227:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195511985	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,5:31:97:0.052:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195511993	rs3107749	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:77,29:32:106:0.274:2	0/1:58,29:31:87:0.333:2	0/1:18,11:32:29:0.379:2	0/1:86,56:30:143:0.394:2	0/1:114,54:30:168:0.321:2	0/1:82,60:31:142:0.423:2	0/1:83,57:31:140:0.407:2	0/1:131,34:30:165:0.206:2	0/1:124,22:33:146:0.151:2	0/1:98,51:31:149:0.342:2	0/1:64,54:30:119:0.458:2
chr3	195512004	rs148317288	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,104:31:104:1.00:2	0/1:0,87:31:87:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,146:31:146:1.00:2	0/1:0,160:31:160:1.00:2	0/1:0,165:31:165:1.00:2	0/1:0,143:31:143:1.00:2	0/1:0,165:31:165:1.00:2	0/1:0,147:32:148:1.00:2	0/1:0,145:31:145:1.00:2	0/1:0,119:31:119:1.00:2
chr3	195512042	rs6805660	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,135:32:135:1.00:2	0/1:0,121:31:121:1.00:2	0/1:0,36:33:36:1.00:2	0/1:0,157:32:157:1.00:2	0/1:0,178:32:178:1.00:2	0/1:0,160:32:160:1.00:2	0/1:0,149:32:149:1.00:2	0/1:0,175:33:175:1.00:2	0/1:0,160:33:160:1.00:2	0/1:0,160:32:160:1.00:2	0/1:0,135:32:136:1.00:2
chr3	195512079	rs200031229	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,29:29:174:0.167:2	0/1:117,32:31:151:0.215:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195512103	rs437805	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:53,6:31:59:0.102:2	0/1:152,25:31:177:0.141:2	./.	./.	0/1:131,45:32:176:0.256:2	0/1:174,13:31:187:0.070:2	./.	0/1:153,25:32:178:0.140:2	0/1:162,17:33:179:0.095:2
chr3	195512107	rs374495657	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,162:31:162:1.00:2	0/1:0,158:31:158:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,171:31:171:1.00:2	0/1:0,192:31:192:1.00:2	0/1:0,186:30:186:1.00:2	0/1:0,169:31:169:1.00:2	0/1:0,178:31:178:1.00:2	0/1:1,189:31:190:0.995:2	0/1:0,170:31:170:1.00:2	0/1:0,174:31:174:1.00:2
chr3	195512117	rs200655750	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,17:32:167:0.102:2	0/1:134,22:30:157:0.141:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195512118	rs199976782	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,25:30:175:0.143:2	./.	./.	./.	./.
chr3	195512186	rs202060675	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,131:32:131:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,44:33:44:1.00:2	0/1:0,159:32:159:1.00:2	0/1:0,165:32:165:1.00:2	0/1:0,152:31:152:1.00:2	0/1:0,152:32:152:1.00:2	0/1:1,158:32:159:0.994:2	0/1:0,123:33:123:1.00:2	0/1:0,140:32:140:1.00:2	0/1:0,155:32:155:1.00:2
chr3	195512206	rs201070566	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:31:141:0.028:2	0/1:111,4:32:115:0.035:2	./.	./.
chr3	195512212	rs75588776	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:92,32:31:124:0.258:2	0/1:71,25:30:96:0.260:2	0/1:30,19:29:49:0.388:2	0/1:154,28:30:183:0.154:2	0/1:145,36:30:181:0.199:2	0/1:124,54:29:178:0.303:2	0/1:128,46:30:174:0.264:2	0/1:122,22:30:144:0.153:2	0/1:94,20:30:114:0.175:2	0/1:128,38:31:166:0.229:2	0/1:121,36:30:157:0.229:2
chr3	195512235	rs62282484	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,6:30:147:0.041:2	./.	./.	./.
chr3	195512245	rs62282486	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,120:32:121:0.992:2	0/1:0,82:32:82:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,164:32:164:1.00:2	0/1:0,168:32:169:1.00:2	0/1:0,161:32:161:1.00:2	0/1:0,161:32:161:1.00:2	0/1:0,133:32:133:1.00:2	0/1:0,124:33:124:1.00:2	0/1:0,136:32:136:1.00:2	0/1:1,140:32:141:0.993:2
chr3	195512287	rs113602668	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:97,26:30:123:0.211:2	0/1:72,27:32:99:0.273:2	0/1:43,8:31:51:0.157:2	0/1:144,25:30:169:0.148:2	0/1:162,25:30:187:0.134:2	0/1:124,43:29:167:0.257:2	0/1:138,46:31:184:0.250:2	0/1:122,33:31:155:0.213:2	0/1:125,23:31:148:0.155:2	0/1:146,29:31:175:0.166:2	0/1:120,40:29:161:0.250:2
chr3	195512302	rs201164821	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:161,25:32:186:0.134:2	./.	./.	./.	0/1:134,26:32:160:0.163:2	./.	0/1:159,18:32:177:0.102:2
chr3	195512343	rs113457754	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,39:32:127:0.307:2	0/1:58,35:32:93:0.376:2	0/1:42,10:32:52:0.192:2	0/1:164,28:32:192:0.146:2	0/1:160,31:31:191:0.162:2	0/1:146,39:31:185:0.211:2	0/1:143,46:32:189:0.243:2	0/1:155,38:32:194:0.197:2	0/1:139,34:32:173:0.197:2	0/1:149,37:33:187:0.199:2	0/1:135,41:32:176:0.233:2
chr3	195512445	rs200972857	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,12:32:167:0.072:2	0/1:117,5:33:122:0.041:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195512460	rs201804964	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:133,6:29:140:0.043:2	./.	./.	0/1:174,7:29:181:0.039:2	./.	./.	./.	./.	./.	./.
chr3	195512508	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,11:30:76:0.145:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195512515	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,29:29:141:0.206:2	0/1:116,31:30:147:0.211:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195512520	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:140,8:26:148:0.054:2	./.	./.	./.	./.	./.	./.	0/1:163,5:31:168:0.030:2	./.	./.
chr3	195512531	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,5:32:164:0.030:2	./.	./.
chr3	195512556	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,26:31:140:0.186:2	0/1:115,25:31:141:0.179:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195512567	rs150659095	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:120,13:30:133:0.098:2	0/1:120,15:27:135:0.111:2	0/1:48,8:30:56:0.143:2	0/1:148,20:29:168:0.119:2	0/1:154,25:31:179:0.140:2	0/1:150,15:31:166:0.091:2	0/1:141,23:30:165:0.140:2	0/1:152,20:30:172:0.116:2	0/1:131,19:30:150:0.127:2	0/1:153,13:29:166:0.078:2	0/1:144,9:32:153:0.059:2
chr3	195512568	rs199625793	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:122,11:30:134:0.083:2	0/1:124,12:30:136:0.088:2	0/1:49,7:30:56:0.125:2	0/1:152,16:31:170:0.095:2	0/1:154,23:30:177:0.130:2	0/1:153,13:31:167:0.078:2	0/1:150,17:31:167:0.102:2	0/1:149,18:28:169:0.108:2	0/1:134,14:32:148:0.095:2	0/1:150,11:31:162:0.068:2	0/1:141,9:31:151:0.060:2
chr3	195512590	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,9:29:151:0.060:2
chr3	195512597	rs6799339	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:117,32:31:149:0.215:2	0/1:116,36:31:152:0.237:2	0/1:45,8:31:54:0.151:2	0/1:155,22:30:177:0.124:2	0/1:147,31:30:178:0.174:2	0/1:143,28:30:171:0.164:2	0/1:131,40:31:171:0.234:2	0/1:137,34:31:171:0.199:2	0/1:117,40:31:158:0.255:2	0/1:150,22:31:172:0.128:2	0/1:127,26:31:153:0.170:2
chr3	195512603	rs79969373	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,12:30:149:0.082:2	0/1:135,13:30:149:0.088:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,11:26:148:0.077:2
chr3	195512606	rs201293918	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,27:31:148:0.182:2	0/1:134,12:32:146:0.082:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195512612	rs76803161	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,14:31:158:0.089:2
chr3	195512629	rs74830022	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:125,14:30:140:0.101:2	0/1:130,14:29:145:0.097:2	./.	0/1:170,7:24:177:0.040:2	0/1:170,10:27:180:0.056:2	0/1:160,9:28:169:0.053:2	0/1:165,7:29:172:0.041:2	0/1:172,5:29:177:0.028:2	0/1:153,5:31:158:0.032:2	0/1:163,12:29:175:0.069:2	0/1:139,12:28:151:0.079:2
chr3	195512631	rs74612617	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:125,22:32:147:0.150:2	0/1:127,22:30:149:0.148:2	./.	0/1:160,17:30:177:0.096:2	0/1:166,13:30:179:0.073:2	0/1:153,18:32:171:0.105:2	0/1:154,20:32:174:0.115:2	0/1:168,12:32:180:0.067:2	0/1:149,13:33:162:0.080:2	0/1:160,17:32:177:0.096:2	0/1:133,22:30:155:0.142:2
chr3	195512646	rs3107750	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:141,9:29:150:0.060:2	0/1:141,11:30:152:0.072:2	./.	0/1:160,9:32:169:0.053:2	0/1:169,5:33:174:0.029:2	0/1:151,12:29:163:0.074:2	0/1:154,16:33:170:0.094:2	0/1:165,8:33:173:0.046:2	0/1:137,8:33:145:0.055:2	0/1:158,5:33:163:0.031:2	0/1:128,12:33:140:0.086:2
chr3	195512665	rs79300100	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:115,30:29:145:0.207:2	0/1:117,44:30:162:0.273:2	./.	0/1:166,6:30:173:0.035:2	0/1:178,5:29:184:0.027:2	0/1:163,11:28:174:0.063:2	0/1:166,10:29:176:0.057:2	0/1:174,9:30:183:0.049:2	0/1:157,7:28:164:0.043:2	0/1:171,5:29:176:0.028:2	0/1:140,14:29:154:0.091:2
chr3	195512686	rs79043683	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,21:31:139:0.151:2	0/1:135,33:29:168:0.196:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195512693	rs79034632	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:116,23:32:139:0.165:2	0/1:144,36:31:180:0.200:2	./.	./.	./.	./.	./.	0/1:177,4:32:181:0.022:2	./.	./.	./.
chr3	195512712	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:138,4:31:143:0.028:2	0/1:163,5:31:168:0.030:2	./.	./.	./.	0/1:165,5:30:170:0.029:2	0/1:175,5:29:180:0.028:2	./.	./.	./.	0/1:154,5:30:159:0.031:2
chr3	195512734	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,5:31:181:0.028:2	./.	./.	./.	./.	./.
chr3	195512742	rs113755990	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:131,34:31:165:0.206:2	./.	./.	./.	0/1:128,36:32:164:0.220:2	./.	0/1:140,23:30:163:0.141:2
chr3	195512767	rs2641778	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,26:32:157:0.166:2	0/1:95,33:30:128:0.258:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195512768	rs2688553	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,25:30:161:0.155:2	0/1:100,30:30:130:0.231:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195512867	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,44:31:193:0.228:2	./.	./.	./.
chr3	195513102	rs3103958	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,100:31:181:0.552:2	0/1:99,82:32:181:0.453:2	0/1:108,46:32:154:0.299:2	0/1:151,38:33:189:0.201:2	0/1:144,51:33:195:0.262:2	0/1:135,54:32:189:0.286:2	0/1:123,69:33:192:0.359:2	0/1:143,48:32:191:0.251:2	0/1:139,48:33:187:0.257:2	0/1:134,47:32:181:0.260:2	0/1:130,60:32:190:0.316:2
chr3	195513126	rs62282488	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,33:31:168:0.196:2	0/1:116,53:32:169:0.314:2	./.	./.
chr3	195513173	rs77448757	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:143,9:33:152:0.059:2	0/1:122,11:32:133:0.083:2	0/1:60,10:32:70:0.143:2	0/1:148,12:31:160:0.075:2	0/1:148,12:31:160:0.075:2	0/1:79,33:30:112:0.295:2	0/1:139,16:32:155:0.103:2	0/1:141,18:31:159:0.113:2	0/1:146,16:32:162:0.099:2	0/1:145,13:30:158:0.082:2	0/1:133,14:32:147:0.095:2
chr3	195513180	rs77724343	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:153,5:31:158:0.032:2	0/1:123,7:31:130:0.054:2	0/1:61,7:31:68:0.103:2	0/1:162,9:31:171:0.053:2	0/1:153,10:30:163:0.061:2	0/1:82,29:29:111:0.261:2	0/1:141,13:31:154:0.084:2	0/1:151,12:30:163:0.074:2	0/1:146,11:31:157:0.070:2	0/1:148,10:30:158:0.063:2	0/1:140,10:29:150:0.067:2
chr3	195513203	rs77879173	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,5:31:111:0.045:2	./.	./.	./.	./.	./.
chr3	195513207	rs78338106	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:114,39:29:153:0.255:2	0/1:94,56:29:150:0.373:2	./.	0/1:164,5:27:169:0.030:2	./.	./.	./.	./.	./.	./.	0/1:156,5:30:161:0.031:2
chr3	195513270	rs2432528	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,62:32:190:0.326:2	0/1:119,56:33:175:0.320:2	./.	./.
chr3	195513298	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:181,6:33:187:0.032:2	./.	./.	./.	./.	./.	./.
chr3	195513345	rs71321841	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:102,48:30:150:0.320:2	0/1:129,39:30:168:0.232:2	0/1:70,54:31:124:0.435:2	0/1:140,32:31:172:0.186:2	0/1:125,35:29:160:0.219:2	0/1:11,126:30:137:0.920:2	0/1:94,57:30:151:0.377:2	0/1:129,38:31:167:0.228:2	0/1:130,39:31:169:0.231:2	0/1:139,40:30:179:0.223:2	0/1:92,63:29:156:0.406:2
chr3	195513351	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,47:32:183:0.257:2	./.
chr3	195513364	rs79986529	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,31:28:145:0.214:2	0/1:96,47:31:147:0.329:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195513365	rs62282501	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,55:32:137:0.401:2	0/1:89,59:32:148:0.399:2	./.	./.
chr3	195513383	rs80123784	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:96,25:30:122:0.207:2	0/1:79,42:30:121:0.347:2	0/1:89,4:29:93:0.043:2	0/1:141,8:24:149:0.054:2	./.	0/1:84,8:30:92:0.087:2	./.	./.	./.	./.	./.
chr3	195513394	rs201993444	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,4:31:107:0.037:2	./.	./.	./.	0/1:82,17:29:101:0.172:2	0/1:102,11:26:116:0.097:2	./.	./.
chr3	195513395	rs200241020	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,19:29:93:0.204:2	0/1:88,18:27:106:0.170:2	0/1:79,4:30:83:0.048:2	0/1:98,4:32:102:0.039:2	0/1:98,16:28:114:0.140:2	0/1:64,26:28:90:0.289:2	0/1:55,27:29:82:0.329:2	0/1:82,19:30:102:0.188:2	0/1:102,14:29:116:0.121:2	0/1:108,13:30:121:0.107:2	0/1:53,26:29:80:0.329:2
chr3	195513397	rs201019164	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:75,17:27:92:0.185:2	0/1:86,11:30:97:0.113:2	./.	0/1:100,4:31:104:0.038:2	0/1:96,12:28:108:0.111:2	0/1:71,16:29:87:0.184:2	0/1:61,19:28:80:0.238:2	0/1:82,17:31:99:0.172:2	0/1:100,10:31:110:0.091:2	0/1:103,9:30:113:0.080:2	0/1:59,19:28:78:0.244:2
chr3	195513398	rs376864964	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,6:27:109:0.055:2	./.	./.	./.	./.	0/1:101,7:31:108:0.065:2	./.	./.	./.	0/1:121,4:34:125:0.032:2	./.
chr3	195513413	rs7374593	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:93,19:30:112:0.170:2	0/1:92,8:28:100:0.080:2	0/1:73,11:31:85:0.131:2	0/1:93,16:29:109:0.147:2	0/1:128,21:31:149:0.141:2	0/1:105,16:30:121:0.132:2	0/1:90,20:31:110:0.182:2	0/1:118,13:30:131:0.099:2	0/1:117,11:28:128:0.086:2	0/1:116,8:32:124:0.065:2	0/1:93,21:30:114:0.184:2
chr3	195513420	rs71321842	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:95,4:29:99:0.040:2	0/1:95,6:29:101:0.059:2	0/1:70,8:30:78:0.103:2	./.	./.	0/1:112,12:31:124:0.097:2	0/1:114,9:29:124:0.073:2	./.	0/1:126,4:32:130:0.031:2	0/1:126,4:30:130:0.031:2	0/1:105,10:31:115:0.087:2
chr3	195513426	rs77396971	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:95,11:32:106:0.104:2	0/1:83,17:31:100:0.170:2	0/1:59,15:32:74:0.203:2	0/1:95,17:32:112:0.152:2	0/1:137,8:33:145:0.055:2	0/1:103,15:30:118:0.127:2	0/1:97,21:33:118:0.178:2	0/1:116,8:30:124:0.065:2	0/1:119,10:32:129:0.078:2	0/1:121,9:33:130:0.069:2	0/1:100,24:32:124:0.194:2
chr3	195513433	rs74419078	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:102,6:29:108:0.056:2	0/1:92,6:27:98:0.061:2	0/1:75,11:27:86:0.128:2	0/1:97,10:28:108:0.093:2	0/1:149,5:28:154:0.032:2	0/1:113,5:28:118:0.042:2	0/1:113,12:29:125:0.096:2	./.	0/1:121,5:27:126:0.040:2	0/1:115,5:29:120:0.042:2	0/1:110,16:30:126:0.127:2
chr3	195513439	rs200271894	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,5:27:108:0.046:2	0/1:87,12:22:99:0.121:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195513443	rs201054227	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,9:17:97:0.095:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195513461	rs199513183	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:123,7:27:130:0.054:2	0/1:97,8:18:106:0.076:2	0/1:101,10:23:112:0.090:2	0/1:113,9:24:122:0.074:2	./.	0/1:132,7:26:140:0.050:2	./.	./.	./.	./.	0/1:134,7:27:141:0.050:2
chr3	195513474	rs77382269	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:126,10:28:136:0.074:2	0/1:93,24:26:117:0.205:2	0/1:96,27:27:123:0.220:2	0/1:133,9:29:142:0.063:2	0/1:172,10:29:182:0.055:2	0/1:140,20:27:160:0.125:2	0/1:146,11:25:158:0.070:2	0/1:159,6:27:165:0.036:2	0/1:147,6:27:153:0.039:2	0/1:142,10:25:152:0.066:2	0/1:130,24:29:154:0.156:2
chr3	195513491	rs79338930	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:123,8:26:131:0.061:2	0/1:120,20:27:142:0.143:2	./.	0/1:174,8:31:182:0.044:2	0/1:162,10:28:172:0.058:2	0/1:157,9:29:166:0.054:2	./.	./.	0/1:166,5:28:171:0.029:2	0/1:151,11:30:162:0.068:2
chr3	195513493	.	C	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:134,14:30:149:0.095:2	0/1:128,8:27:138:0.059:2	0/1:135,4:31:139:0.029:2	0/1:151,20:30:172:0.117:2	0/1:167,13:30:180:0.072:2	0/1:129,44:30:173:0.254:2	0/1:160,12:30:172:0.070:2	0/1:163,15:28:178:0.084:2	0/1:154,16:30:170:0.094:2	0/1:149,22:31:171:0.129:2	0/1:136,25:31:161:0.155:2
chr3	195513502	rs74664428	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:143,12:24:155:0.077:2	0/1:122,12:29:134:0.090:2	./.	0/1:185,5:29:190:0.026:2	0/1:176,8:29:184:0.043:2	0/1:171,6:33:177:0.034:2	./.	./.	0/1:168,7:33:175:0.040:2	0/1:172,8:27:180:0.044:2
chr3	195513509	rs79251727	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,6:30:165:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195513515	rs201194776	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:154,17:29:171:0.099:2	0/1:148,23:29:171:0.135:2	0/1:127,17:29:146:0.118:2	0/1:150,30:27:180:0.167:2	0/1:171,17:31:188:0.090:2	0/1:131,51:28:182:0.280:2	0/1:152,23:29:175:0.131:2	0/1:160,20:27:180:0.111:2	0/1:147,20:31:167:0.120:2	0/1:144,30:29:174:0.172:2	0/1:152,28:27:180:0.156:2
chr3	195513519	rs201585392	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:152,19:29:171:0.111:2	0/1:153,20:30:174:0.116:2	0/1:130,19:29:151:0.128:2	0/1:146,34:30:181:0.189:2	0/1:168,21:31:189:0.111:2	0/1:129,51:30:180:0.283:2	0/1:146,29:31:175:0.166:2	0/1:160,22:29:182:0.121:2	0/1:154,18:32:172:0.105:2	0/1:142,34:30:176:0.193:2	0/1:149,26:30:178:0.149:2
chr3	195513521	rs111334497	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,6:28:179:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195513566	rs78438024	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:158,5:28:163:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195513571	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,7:25:176:0.040:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195513598	rs57748294	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,40:32:169:0.237:2	0/1:116,24:27:140:0.171:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195513621	rs201563008	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,5:32:99:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195513662	.	C	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:151,9:29:160:0.056:2	0/1:141,7:29:148:0.047:2	0/1:43,5:30:48:0.104:2	0/1:153,6:32:159:0.038:2	0/1:157,4:33:161:0.025:2	0/1:141,8:31:150:0.054:2	0/1:164,8:29:172:0.047:2	0/1:152,5:30:157:0.032:2	0/1:172,6:32:178:0.034:2	0/1:149,8:31:157:0.051:2	0/1:132,16:30:148:0.108:2
chr3	195513667	rs200618919	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:155,10:30:165:0.061:2	0/1:139,9:30:148:0.061:2	0/1:40,7:31:47:0.149:2	0/1:148,11:29:159:0.069:2	0/1:146,11:31:157:0.070:2	0/1:137,16:30:153:0.105:2	0/1:156,17:30:173:0.098:2	0/1:157,9:33:166:0.054:2	0/1:170,9:32:179:0.050:2	0/1:144,14:31:158:0.089:2	0/1:130,20:30:150:0.133:2
chr3	195513673	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,5:30:149:0.034:2
chr3	195513676	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,5:32:169:0.030:2	./.
chr3	195513680	rs7372250	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:118,40:28:158:0.253:2	0/1:110,30:29:141:0.214:2	0/1:23,21:28:44:0.477:2	0/1:111,48:26:159:0.302:2	0/1:104,56:27:161:0.350:2	0/1:85,67:27:152:0.441:2	0/1:96,68:27:164:0.415:2	0/1:117,45:28:162:0.278:2	0/1:131,41:29:174:0.238:2	0/1:120,44:29:164:0.268:2	0/1:104,46:29:150:0.307:2
chr3	195513717	rs200676464	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:120,5:26:125:0.040:2	./.	./.	./.	./.	./.	./.	0/1:145,4:33:149:0.027:2	./.	./.
chr3	195513743	rs59668135	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,49:29:138:0.355:2	0/1:75,41:28:119:0.353:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195513758	rs202045385	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:132,5:32:139:0.036:2	0/1:106,6:32:112:0.054:2	0/1:32,5:32:37:0.135:2	0/1:144,11:30:155:0.071:2	0/1:144,7:27:152:0.046:2	0/1:123,6:32:129:0.047:2	0/1:162,6:32:168:0.036:2	0/1:141,9:29:151:0.060:2	./.	./.	./.
chr3	195513769	rs200578094	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:125,5:28:131:0.038:2	./.	./.	0/1:142,9:30:151:0.060:2	0/1:136,9:27:145:0.062:2	0/1:110,15:30:126:0.120:2	0/1:135,6:32:141:0.043:2	0/1:144,5:31:149:0.034:2	0/1:132,10:29:143:0.070:2	./.	0/1:96,7:26:104:0.068:2
chr3	195513772	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:151,5:32:156:0.032:2	0/1:137,4:32:141:0.028:2	./.	0/1:135,5:31:140:0.036:2	./.	0/1:138,5:32:143:0.035:2	./.	0/1:99,5:32:104:0.048:2
chr3	195513779	rs3103959	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:85,28:30:114:0.248:2	0/1:63,22:29:89:0.259:2	0/1:20,12:28:32:0.375:2	0/1:121,27:30:151:0.182:2	0/1:107,26:30:135:0.195:2	0/1:55,51:29:106:0.481:2	0/1:85,46:30:131:0.351:2	0/1:126,26:32:153:0.171:2	0/1:116,20:31:136:0.147:2	0/1:94,34:30:129:0.266:2	0/1:66,28:31:95:0.298:2
chr3	195513806	rs199976859	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,3:30:25:0.120:2	0/1:146,11:30:157:0.070:2	0/1:140,5:28:145:0.034:2	0/1:93,4:31:97:0.041:2	./.	0/1:133,5:33:138:0.036:2	./.	./.	./.
chr3	195513812	rs201142885	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,3:33:27:0.111:2	0/1:144,11:31:155:0.071:2	./.	./.	./.	./.	./.	./.	./.
chr3	195513826	rs202029925	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:80,12:30:92:0.130:2	./.	0/1:17,3:30:20:0.150:2	0/1:125,9:32:134:0.067:2	0/1:130,9:30:139:0.065:2	0/1:64,14:31:78:0.179:2	0/1:106,14:31:120:0.117:2	0/1:118,7:33:125:0.056:2	0/1:112,4:31:116:0.034:2	0/1:93,7:32:100:0.070:2	0/1:69,7:30:76:0.092:2
chr3	195513831	rs200208054	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:76,9:29:85:0.106:2	0/1:46,4:26:50:0.080:2	0/1:16,3:32:19:0.158:2	0/1:123,8:32:132:0.061:2	0/1:130,8:31:138:0.058:2	0/1:62,12:31:74:0.162:2	0/1:107,14:31:121:0.116:2	0/1:126,4:31:130:0.031:2	0/1:110,4:33:114:0.035:2	0/1:99,5:31:104:0.048:2	0/1:70,6:32:76:0.079:2
chr3	195513846	rs200981553	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:78,5:33:85:0.060:2	0/1:47,4:32:51:0.078:2	./.	0/1:127,5:32:132:0.038:2	0/1:128,5:33:133:0.038:2	0/1:64,9:34:73:0.123:2	0/1:122,16:31:138:0.116:2	0/1:118,10:32:128:0.078:2	./.	0/1:105,9:32:114:0.079:2	0/1:67,20:33:88:0.230:2
chr3	195513847	rs200019432	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:81,8:28:89:0.090:2	0/1:43,7:30:50:0.140:2	./.	0/1:119,12:29:131:0.092:2	0/1:116,16:28:132:0.121:2	0/1:55,19:30:74:0.257:2	0/1:110,26:30:136:0.191:2	0/1:110,18:30:129:0.141:2	0/1:102,8:31:110:0.073:2	0/1:101,14:30:115:0.122:2	0/1:57,30:31:87:0.345:2
chr3	195513906	rs200485723	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,39:30:114:0.342:2	0/1:41,15:27:56:0.268:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195513942	.	A	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:99,5:27:104:0.048:2	./.	./.	0/1:178,6:33:184:0.033:2	0/1:175,7:32:182:0.038:2	0/1:96,8:32:104:0.077:2	0/1:143,20:31:163:0.123:2	0/1:147,9:31:156:0.058:2	./.	0/1:177,5:32:182:0.027:2	0/1:105,12:32:117:0.103:2
chr3	195513946	rs200947577	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:175,6:33:181:0.033:2	0/1:176,6:27:182:0.033:2	0/1:97,8:29:105:0.076:2	0/1:140,17:31:157:0.108:2	0/1:146,10:29:157:0.064:2	./.	./.	0/1:102,11:27:113:0.097:2
chr3	195513971	rs201629146	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,9:32:182:0.049:2	./.	./.	./.	./.
chr3	195513991	rs201808250	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,34:32:98:0.347:2	0/1:40,18:29:58:0.310:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195514037	rs75516231	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:33:89:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195514044	rs12489833	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,10:28:89:0.115:2	0/1:36,8:31:45:0.182:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195514084	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,33:28:131:0.252:2	./.	./.	./.	./.
chr3	195514104	rs77907507	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,53:31:111:0.477:2	0/1:30,22:30:52:0.423:2	0/1:0,20:31:20:1.00:2	0/1:168,15:32:183:0.082:2	0/1:173,17:31:190:0.089:2	0/1:7,97:30:104:0.933:2	0/1:20,104:31:125:0.839:2	0/1:136,47:30:183:0.257:2	0/1:128,37:31:165:0.224:2	0/1:154,21:31:175:0.120:2	0/1:3,107:30:110:0.973:2
chr3	195514105	rs199800263	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,9:31:113:0.080:2	./.	./.	./.	./.	0/1:103,5:30:110:0.046:2	0/1:128,5:30:133:0.038:2	./.	./.	./.	./.
chr3	195514109	rs12489838	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,108:31:109:0.991:2	0/1:0,55:31:55:1.00:2	0/1:0,20:30:20:1.00:2	0/1:162,21:30:184:0.115:2	0/1:169,20:31:189:0.106:2	0/1:1,105:30:106:0.991:2	0/1:15,114:31:129:0.884:2	0/1:125,52:31:177:0.294:2	0/1:125,38:30:163:0.233:2	0/1:162,21:31:183:0.115:2	0/1:0,110:30:110:1.00:2
chr3	195514118	rs201702465	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,48:29:107:0.453:2	0/1:29,32:28:61:0.525:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195514144	rs76816122	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,97:31:97:1.00:2	0/1:0,68:30:68:1.00:2	0/1:0,19:32:19:1.00:2	0/1:166,21:32:188:0.112:2	0/1:166,20:31:186:0.108:2	0/1:0,88:31:88:1.00:2	0/1:14,117:31:131:0.893:2	0/1:129,52:31:181:0.287:2	0/1:137,34:33:171:0.199:2	0/1:171,18:31:189:0.095:2	0/1:0,83:32:83:1.00:2
chr3	195514163	rs201069586	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,5:31:95:0.053:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195514174	rs112181971	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,6:31:90:0.067:2	0/1:63,5:26:68:0.074:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195514201	rs200431509	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,6:31:70:0.086:2
chr3	195514211	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:165,9:28:174:0.052:2	0/1:73,4:30:77:0.052:2	0/1:117,7:30:125:0.056:2	0/1:152,9:31:161:0.056:2	./.	./.	0/1:58,7:32:65:0.108:2
chr3	195514228	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:177,5:31:182:0.027:2	./.	0/1:128,9:31:137:0.066:2	./.	./.	./.	./.
chr3	195514230	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,5:31:89:0.056:2	./.	./.	./.	./.	./.
chr3	195514263	rs202170604	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:32:67:0.060:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195514278	rs77234015	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,7:31:136:0.051:2	./.	./.	./.
chr3	195514279	rs201407450	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:32:133:0.030:2	0/1:129,6:32:136:0.044:2	./.	./.	./.
chr3	195514303	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:143,5:32:148:0.034:2	./.	0/1:104,9:31:113:0.080:2	./.	./.	./.	./.
chr3	195514324	rs78009073	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,10:32:31:0.323:2	0/1:17,20:31:37:0.541:2	0/1:4,8:30:12:0.667:2	0/1:98,34:31:132:0.258:2	0/1:95,24:32:119:0.202:2	./.	0/1:20,61:31:81:0.753:2	0/1:47,17:30:64:0.266:2	0/1:41,21:32:62:0.339:2	0/1:80,25:32:105:0.238:2	0/1:12,30:31:42:0.714:2
chr3	195514330	rs202049742	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:130,5:32:135:0.037:2	./.	0/1:42,4:28:46:0.087:2	0/1:66,9:29:75:0.120:2	./.	0/1:52,4:32:57:0.071:2	./.	0/1:33,3:33:36:0.083:2
chr3	195514332	rs200766994	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,12:29:26:0.462:2	0/1:28,8:28:36:0.222:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195514345	rs199579326	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,12:29:21:0.571:2	0/1:20,6:30:26:0.231:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195514379	rs79461778	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,4:31:11:0.400:2	0/1:10,6:30:16:0.375:2	0/1:2,3:31:5:0.600:2	0/1:90,13:28:104:0.126:2	0/1:113,7:25:121:0.058:2	0/1:4,19:30:23:0.826:2	0/1:7,15:26:22:0.682:2	0/1:20,6:27:26:0.231:2	0/1:15,6:26:21:0.286:2	0/1:82,5:32:87:0.057:2	0/1:7,7:29:14:0.500:2
chr3	195514393	rs12491056	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,6:28:94:0.065:2	0/1:119,4:34:123:0.033:2	0/1:6,5:34:11:0.455:2	0/1:12,7:32:19:0.368:2	./.	0/1:19,3:33:22:0.136:2	0/1:79,4:33:84:0.048:2	./.
chr3	195514403	rs79754259	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,5:26:15:0.333:2	0/1:20,6:29:26:0.231:2	./.	./.	./.
chr3	195514450	rs78359274	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,5:31:48:0.104:2	./.	./.	./.
chr3	195514455	rs79619815	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,5:35:52:0.096:2	./.	./.	./.
chr3	195514470	rs200851738	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:39,3:32:43:0.071:2	./.	./.	./.	0/1:130,7:30:137:0.051:2	0/1:34,8:32:42:0.190:2	./.	0/1:51,6:31:57:0.105:2	./.	./.	0/1:38,6:33:44:0.136:2
chr3	195514471	rs202010192	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,7:30:46:0.152:2	./.	./.	0/1:104,10:28:114:0.088:2	0/1:127,10:31:137:0.073:2	0/1:28,14:30:42:0.333:2	0/1:52,17:28:69:0.246:2	0/1:47,11:29:58:0.190:2	0/1:41,6:30:47:0.128:2	0/1:82,7:24:89:0.079:2	0/1:32,12:27:44:0.273:2
chr3	195514530	rs200834577	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,29:29:83:0.349:2	0/1:25,16:26:41:0.390:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195514566	.	A	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:81,4:31:85:0.047:2	./.	./.	0/1:169,4:32:174:0.023:2	0/1:174,8:32:182:0.044:2	0/1:88,5:31:94:0.054:2	0/1:173,8:32:181:0.044:2	0/1:123,4:33:127:0.031:2	0/1:97,4:33:101:0.040:2	0/1:161,9:29:170:0.053:2	0/1:108,7:29:115:0.061:2
chr3	195514570	rs199604348	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:85,4:32:89:0.045:2	./.	./.	./.	0/1:176,8:29:184:0.043:2	0/1:90,5:31:95:0.053:2	0/1:171,5:29:176:0.028:2	0/1:127,4:32:131:0.031:2	0/1:103,4:32:107:0.037:2	0/1:165,8:27:173:0.046:2	0/1:109,5:29:114:0.044:2
chr3	195514595	rs200578865	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,5:26:104:0.049:2	./.	./.	./.	0/1:169,5:30:174:0.029:2	./.
chr3	195514615	rs201076012	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,31:31:87:0.356:2	0/1:38,21:31:59:0.356:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195514661	rs202177175	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:32:85:0.047:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195514668	rs200985167	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,8:31:86:0.094:2	0/1:36,8:29:44:0.182:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195514708	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,31:30:147:0.211:2	./.	./.	./.	./.
chr3	195514728	.	T	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,52:31:88:0.591:2	0/1:27,39:31:66:0.591:2	0/1:3,12:31:15:0.800:2	0/1:161,22:31:183:0.120:2	0/1:172,17:31:189:0.090:2	0/1:14,105:30:119:0.882:2	0/1:28,106:30:134:0.791:2	0/1:139,38:30:177:0.215:2	0/1:140,31:32:171:0.181:2	0/1:157,24:32:181:0.133:2	0/1:7,81:29:88:0.920:2
chr3	195514729	rs200470030	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,5:32:90:0.056:2	./.	./.	./.	./.	0/1:111,9:29:120:0.075:2	0/1:124,14:30:138:0.101:2	./.	0/1:167,5:30:172:0.029:2	./.	0/1:86,7:30:93:0.075:2
chr3	195514733	rs201433788	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,87:30:90:0.978:2	0/1:0,71:31:71:1.00:2	0/1:1,15:32:16:0.938:2	0/1:164,24:32:188:0.128:2	0/1:165,19:31:184:0.103:2	0/1:3,112:30:115:0.974:2	0/1:14,116:30:131:0.892:2	0/1:140,39:30:179:0.218:2	0/1:136,38:31:174:0.218:2	0/1:155,25:31:180:0.139:2	0/1:0,89:30:89:1.00:2
chr3	195514742	rs199676142	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,27:28:80:0.338:2	0/1:48,28:29:76:0.368:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195514768	rs199530228	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,68:31:69:0.986:2	0/1:0,74:31:74:1.00:2	0/1:1,11:31:12:0.917:2	0/1:151,29:32:181:0.161:2	0/1:171,17:31:188:0.090:2	0/1:2,108:32:110:0.982:2	0/1:12,101:32:113:0.894:2	0/1:142,37:31:179:0.207:2	0/1:138,35:31:173:0.202:2	0/1:158,26:32:184:0.141:2	0/1:0,79:30:79:1.00:2
chr3	195514825	rs200800552	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,5:28:179:0.028:2	./.
chr3	195514835	.	T	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:154,9:29:163:0.055:2	0/1:180,5:32:185:0.027:2	./.	0/1:139,6:31:145:0.041:2	0/1:162,6:26:168:0.036:2	./.	0/1:161,5:31:168:0.030:2	0/1:66,9:26:76:0.120:2
chr3	195514852	rs201132617	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:166,6:31:172:0.035:2	./.	./.	./.	./.	./.	0/1:156,9:31:165:0.055:2	0/1:76,6:30:82:0.073:2
chr3	195514854	rs375297909	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,5:30:71:0.070:2	./.	./.	./.	./.	./.
chr3	195514873	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:27:68:0.059:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195514882	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,6:26:73:0.082:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195514887	rs200358429	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,9:32:67:0.134:2	0/1:39,6:32:45:0.133:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195514902	rs201387180	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:26:42:0.098:2	./.	./.	./.	./.	./.	./.	0/1:111,7:33:118:0.059:2	./.	./.
chr3	195514903	rs199565317	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:149,4:31:153:0.026:2	./.	0/1:67,4:31:71:0.056:2	0/1:124,4:32:128:0.031:2	./.	0/1:114,6:26:120:0.050:2	./.	0/1:87,6:31:93:0.065:2
chr3	195514927	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:131,4:32:135:0.030:2	./.	0/1:102,9:30:111:0.081:2	0/1:141,4:32:145:0.028:2	./.	0/1:133,7:32:140:0.050:2	./.
chr3	195514948	rs200751227	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,22:32:67:0.328:2	0/1:20,8:30:28:0.286:2	0/1:6,5:27:11:0.455:2	0/1:109,34:31:144:0.238:2	0/1:91,19:30:110:0.173:2	./.	0/1:23,54:31:77:0.701:2	0/1:97,33:31:130:0.254:2	0/1:65,16:33:81:0.198:2	0/1:80,32:32:112:0.286:2	0/1:19,38:31:57:0.667:2
chr3	195514954	.	G	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:138,6:31:144:0.042:2	0/1:94,9:26:103:0.087:2	0/1:57,5:26:62:0.081:2	0/1:65,7:28:72:0.097:2	0/1:116,11:31:127:0.087:2	0/1:70,6:30:76:0.079:2	./.	./.
chr3	195514956	rs201497377	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:28,31:26:59:0.525:2	0/1:12,11:26:23:0.478:2	./.	./.	./.	./.	./.	0/1:118,7:26:125:0.056:2	./.	./.	0/1:42,5:27:48:0.106:2
chr3	195514969	rs192133475	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,36:29:59:0.610:2	0/1:9,13:31:22:0.591:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195514990	rs79746945	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:124,4:33:128:0.031:2	0/1:82,5:34:87:0.057:2	0/1:40,5:33:45:0.111:2	0/1:33,4:32:37:0.108:2	./.	./.	./.	./.
chr3	195514995	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:29:78:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:30:90:0.044:2	./.
chr3	195515003	rs76196931	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,16:28:78:0.205:2	0/1:33,5:29:38:0.132:2	0/1:0,2:30:2:1.00:2	0/1:98,30:27:128:0.234:2	0/1:63,32:29:95:0.337:2	0/1:1,40:27:41:0.976:2	0/1:7,37:29:44:0.841:2	0/1:69,27:27:96:0.281:2	0/1:57,14:28:71:0.197:2	0/1:63,19:29:82:0.232:2	0/1:3,24:26:27:0.889:2
chr3	195515004	rs200518052	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,6:30:96:0.063:2	./.	./.	./.
chr3	195515008	rs201451131	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:78,6:32:84:0.071:2	./.	./.	0/1:124,13:33:137:0.095:2	0/1:87,13:31:101:0.130:2	0/1:35,17:33:52:0.327:2	0/1:40,15:33:55:0.273:2	./.	./.	0/1:76,7:32:83:0.084:2	0/1:33,5:28:38:0.132:2
chr3	195515017	rs199883835	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,55:32:88:0.625:2	0/1:15,32:31:47:0.681:2	./.	0/1:130,12:30:142:0.085:2	0/1:111,6:30:117:0.051:2	0/1:35,23:31:58:0.397:2	0/1:50,14:32:65:0.219:2	0/1:94,10:33:104:0.096:2	0/1:77,6:35:84:0.072:2	0/1:73,7:29:80:0.088:2	0/1:33,11:31:44:0.250:2
chr3	195515018	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,7:26:48:0.146:2
chr3	195515025	rs199975352	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,48:31:95:0.505:2	0/1:26,28:32:54:0.519:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195515026	rs200763050	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,10:31:96:0.104:2	0/1:48,6:29:54:0.111:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195515031	rs368837663	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,9:32:82:0.110:2	./.	./.	./.	./.	./.
chr3	195515038	rs201206859	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:62,4:31:69:0.061:2	./.	./.	./.	0/1:90,5:30:95:0.053:2	0/1:77,8:26:85:0.094:2	0/1:130,4:31:134:0.030:2	0/1:97,5:30:102:0.049:2	0/1:79,6:31:85:0.071:2	0/1:57,4:27:61:0.066:2
chr3	195515045	rs78683709	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:117,4:31:121:0.033:2	./.	./.	0/1:152,5:31:157:0.032:2	0/1:146,5:30:151:0.033:2	./.	0/1:82,6:26:88:0.068:2	0/1:133,4:31:137:0.029:2	./.	./.	0/1:54,12:31:66:0.182:2
chr3	195515052	.	G	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:120,7:32:127:0.055:2	0/1:73,4:31:77:0.052:2	./.	./.	./.	0/1:108,6:31:114:0.053:2	0/1:88,7:31:95:0.074:2	0/1:141,4:31:145:0.028:2	0/1:99,5:31:104:0.048:2	0/1:75,7:31:82:0.085:2	0/1:62,4:30:67:0.061:2
chr3	195515065	rs74695299	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:147,6:29:153:0.039:2	0/1:148,8:29:156:0.051:2	./.	0/1:100,13:28:113:0.115:2	0/1:151,5:31:156:0.032:2	./.	./.	0/1:71,6:25:79:0.078:2
chr3	195515075	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,6:22:82:0.074:2
chr3	195515079	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,5:29:118:0.042:2	./.	./.
chr3	195515093	rs11916899	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:118,5:30:123:0.041:2	./.	./.	0/1:138,6:29:144:0.042:2	0/1:154,7:31:161:0.043:2	./.	0/1:121,9:29:131:0.069:2	0/1:143,7:28:150:0.047:2	0/1:114,4:33:118:0.034:2	./.	0/1:84,7:30:91:0.077:2
chr3	195515094	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,7:32:122:0.057:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195515099	rs71321848	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:95,11:25:107:0.104:2	0/1:61,9:20:74:0.129:2	./.	0/1:117,13:27:131:0.100:2	0/1:133,13:26:147:0.089:2	0/1:132,9:28:143:0.064:2	0/1:115,13:25:131:0.102:2	0/1:136,11:26:148:0.075:2	0/1:104,11:28:118:0.096:2	0/1:87,8:26:96:0.084:2	0/1:70,15:28:87:0.176:2
chr3	195515102	rs199995135	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:100,6:29:106:0.057:2	0/1:70,5:30:75:0.067:2	./.	0/1:131,6:24:138:0.044:2	./.	./.	./.	0/1:139,8:29:147:0.054:2	./.	./.	0/1:85,6:31:91:0.066:2
chr3	195515104	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:137,4:34:141:0.028:2	./.	0/1:144,5:32:149:0.034:2	./.	./.	./.	./.	./.
chr3	195515113	rs71321849	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:97,7:33:104:0.067:2	0/1:68,8:31:76:0.105:2	./.	0/1:139,4:33:144:0.028:2	./.	./.	./.	0/1:142,7:28:149:0.047:2	./.	./.	./.
chr3	195515122	rs202171964	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,39:32:98:0.398:2	0/1:51,25:31:76:0.329:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195515134	rs374418206	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:101,4:31:105:0.038:2	./.	./.	./.	0/1:143,11:30:154:0.071:2	0/1:142,10:31:152:0.066:2	0/1:126,9:32:135:0.067:2	0/1:130,14:31:144:0.097:2	0/1:107,6:33:113:0.053:2	0/1:105,5:31:110:0.045:2	0/1:94,5:33:99:0.051:2
chr3	195515141	rs71321850	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:90,8:30:98:0.082:2	0/1:67,12:28:79:0.152:2	./.	0/1:145,13:27:158:0.082:2	0/1:145,20:30:165:0.121:2	0/1:128,22:30:150:0.147:2	0/1:128,16:33:144:0.111:2	0/1:127,21:32:148:0.142:2	0/1:102,14:30:116:0.121:2	0/1:101,9:31:110:0.082:2	0/1:85,14:32:99:0.141:2
chr3	195515146	rs371208365	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:31:153:0.026:2	./.	./.	./.
chr3	195515161	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,6:29:166:0.036:2	./.	./.	./.
chr3	195515175	rs112260425	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:66,58:30:124:0.468:2	0/1:47,27:29:74:0.365:2	./.	0/1:146,12:31:158:0.076:2	0/1:167,9:31:177:0.051:2	0/1:162,7:25:169:0.041:2	0/1:141,14:28:155:0.090:2	0/1:154,18:30:172:0.105:2	0/1:129,10:30:139:0.072:2	./.	0/1:101,8:30:110:0.073:2
chr3	195515190	rs112448158	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,56:30:141:0.400:2	0/1:59,25:29:84:0.298:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195515194	rs201370057	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:138,10:29:148:0.068:2	0/1:72,11:26:83:0.133:2	./.	0/1:130,24:32:154:0.156:2	0/1:163,12:32:175:0.069:2	0/1:151,14:29:165:0.085:2	0/1:145,16:29:161:0.099:2	0/1:155,19:30:174:0.109:2	0/1:121,26:29:147:0.177:2	0/1:98,26:30:124:0.210:2	0/1:108,17:28:125:0.136:2
chr3	195515218	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,5:30:175:0.029:2	./.	./.	./.
chr3	195515242	rs375027751	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:154,9:25:164:0.055:2	./.	./.	./.	0/1:159,6:31:165:0.036:2	./.	0/1:127,7:24:134:0.052:2	./.
chr3	195515290	rs78535324	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,7:30:95:0.074:2	0/1:65,7:26:72:0.097:2	0/1:29,6:31:35:0.171:2	0/1:150,10:31:160:0.063:2	0/1:148,12:31:160:0.075:2	0/1:116,15:30:131:0.115:2	0/1:139,15:31:154:0.097:2	0/1:149,11:30:160:0.069:2	0/1:127,12:31:139:0.086:2	0/1:96,16:30:112:0.143:2	0/1:90,20:29:110:0.182:2
chr3	195515295	rs79955220	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,41:30:97:0.427:2	0/1:44,30:30:75:0.405:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195515304	rs202019266	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:93,4:34:97:0.041:2	0/1:68,5:33:73:0.068:2	0/1:23,3:33:26:0.115:2	0/1:142,6:33:148:0.041:2	0/1:148,7:31:155:0.045:2	0/1:119,6:31:125:0.048:2	0/1:135,9:33:144:0.063:2	0/1:153,5:32:158:0.032:2	0/1:133,7:33:140:0.050:2	0/1:106,6:33:112:0.054:2	0/1:92,5:34:97:0.052:2
chr3	195515315	rs71617321	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,93:32:93:1.00:2	0/1:2,65:32:67:0.970:2	0/1:0,24:31:24:1.00:2	0/1:68,69:32:138:0.504:2	0/1:71,67:31:138:0.486:2	0/1:2,110:31:112:0.982:2	0/1:3,113:31:116:0.974:2	0/1:56,87:32:143:0.608:2	0/1:65,58:33:123:0.472:2	0/1:58,48:32:106:0.453:2	0/1:5,73:32:78:0.936:2
chr3	195515338	rs13060286	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:86,10:32:96:0.104:2	0/1:61,8:29:69:0.116:2	./.	0/1:121,10:30:131:0.076:2	0/1:133,14:26:147:0.095:2	0/1:113,20:29:133:0.150:2	0/1:105,8:28:113:0.071:2	0/1:135,13:30:148:0.088:2	0/1:124,6:28:130:0.046:2	0/1:107,8:28:115:0.070:2	0/1:65,10:27:75:0.133:2
chr3	195515340	rs79661483	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,39:30:92:0.424:2	0/1:49,16:31:65:0.246:2	0/1:7,12:30:19:0.632:2	0/1:85,42:30:127:0.331:2	0/1:94,49:31:144:0.343:2	0/1:28,102:29:130:0.785:2	0/1:26,79:30:105:0.752:2	0/1:81,65:31:146:0.445:2	0/1:81,46:32:127:0.362:2	0/1:72,45:31:117:0.385:2	0/1:21,52:32:73:0.712:2
chr3	195515353	rs13065435	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:96,6:32:102:0.059:2	./.	./.	0/1:121,8:29:131:0.062:2	0/1:146,7:31:156:0.046:2	./.	0/1:107,9:32:117:0.078:2	./.	0/1:129,5:33:134:0.037:2	./.	0/1:70,6:28:78:0.079:2
chr3	195515367	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,5:31:116:0.043:2	./.	./.	./.	./.
chr3	195515387	rs13065584	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,9:30:97:0.093:2	0/1:63,5:24:69:0.074:2	0/1:9,3:27:12:0.250:2	0/1:116,6:31:124:0.049:2	0/1:120,12:28:135:0.091:2	0/1:104,17:26:125:0.140:2	0/1:103,5:31:108:0.046:2	0/1:123,10:30:133:0.075:2	0/1:125,7:24:133:0.053:2	0/1:106,5:28:114:0.045:2	0/1:62,8:24:71:0.114:2
chr3	195515398	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,39:30:113:0.345:2	./.	./.	./.	./.
chr3	195515411	rs55803325	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:87,7:31:95:0.074:2	0/1:70,4:29:75:0.054:2	./.	0/1:118,7:27:126:0.056:2	0/1:117,11:30:131:0.086:2	0/1:74,16:30:91:0.178:2	0/1:113,6:24:120:0.050:2	0/1:119,10:31:129:0.078:2	./.	0/1:105,6:30:111:0.054:2	0/1:51,13:28:64:0.203:2
chr3	195515413	rs55868431	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:87,8:28:95:0.084:2	./.	./.	0/1:122,7:27:129:0.054:2	0/1:118,13:30:131:0.099:2	0/1:72,16:29:88:0.182:2	0/1:114,6:28:120:0.050:2	0/1:122,10:25:132:0.076:2	0/1:124,5:29:129:0.039:2	0/1:96,7:31:103:0.068:2	0/1:50,14:26:64:0.219:2
chr3	195515414	rs200193644	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:88,7:31:95:0.074:2	./.	./.	0/1:122,7:28:129:0.054:2	0/1:116,13:27:129:0.101:2	0/1:68,16:28:87:0.190:2	0/1:114,6:25:120:0.050:2	0/1:124,10:28:134:0.075:2	0/1:121,5:29:126:0.040:2	0/1:95,7:30:102:0.069:2	0/1:50,13:27:63:0.206:2
chr3	195515422	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:127,7:32:134:0.052:2	./.	./.	./.	./.	./.	./.	./.
chr3	195515436	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:130,6:32:136:0.044:2	./.	./.	./.	./.	./.	./.	./.
chr3	195515449	rs200672669	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:129,4:31:133:0.030:2	0/1:86,5:26:92:0.055:2	0/1:13,3:32:16:0.188:2	0/1:119,14:28:135:0.105:2	0/1:123,17:30:141:0.121:2	0/1:104,16:27:121:0.133:2	0/1:127,7:29:135:0.052:2	0/1:141,14:29:156:0.090:2	0/1:133,13:29:146:0.089:2	0/1:124,10:32:134:0.075:2	0/1:84,15:30:99:0.152:2
chr3	195515459	rs201513283	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,5:28:130:0.038:2	./.	./.	0/1:139,6:31:145:0.041:2	./.	./.
chr3	195515460	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:140,5:28:145:0.034:2	0/1:124,6:27:131:0.046:2	./.	./.	0/1:143,6:33:149:0.040:2	./.	0/1:102,6:24:108:0.056:2
chr3	195515568	rs62282504	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:105,73:30:178:0.410:2	0/1:84,95:31:179:0.531:2	./.	./.	./.	./.	./.	0/1:117,66:31:183:0.361:2	0/1:107,70:32:177:0.395:2	./.	./.
chr3	195515594	rs13095016	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,170:33:171:0.994:2	0/1:0,179:32:179:1.00:2	0/1:0,65:32:65:1.00:2	0/1:85,107:33:192:0.557:2	0/1:118,78:33:196:0.398:2	0/1:1,181:33:182:0.995:2	0/1:5,187:34:192:0.974:2	0/1:6,170:33:179:0.966:2	0/1:1,174:34:175:0.994:2	0/1:0,187:33:188:1.00:2	0/1:0,176:33:177:1.00:2
chr3	195515617	rs2641776	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,171:32:171:1.00:2	0/1:0,180:32:180:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,190:32:190:1.00:2	0/1:108,88:32:196:0.449:2	0/1:0,190:32:190:1.00:2	0/1:5,187:32:192:0.974:2	0/1:2,185:32:187:0.989:2	0/1:1,178:34:179:0.994:2	0/1:106,89:32:195:0.456:2	0/1:0,182:32:182:1.00:2
chr3	195516305	rs3749331	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,83:30:182:0.456:2	0/1:65,44:30:110:0.404:2	./.	./.
chr3	195516630	rs3103954	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,186:32:187:0.995:2	0/1:0,171:31:171:1.00:2	0/1:0,58:31:58:1.00:2	0/1:103,93:31:196:0.474:2	0/1:117,80:31:197:0.406:2	0/1:2,187:31:190:0.989:2	0/1:4,190:32:194:0.979:2	0/1:0,191:32:191:1.00:2	0/1:0,181:32:181:1.00:2	0/1:101,85:31:186:0.457:2	0/1:0,179:32:179:1.00:2
chr3	195516730	rs74547899	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,64:31:152:0.421:2
chr3	195516878	rs2177336	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:32:87:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,12:31:12:1.00:2	0/1:100,85:32:185:0.459:2	0/1:65,55:32:120:0.458:2	0/1:0,156:32:157:1.00:2	0/1:3,111:32:114:0.974:2	0/1:0,160:32:160:1.00:2	0/1:0,146:32:146:1.00:2	0/1:69,38:32:107:0.355:2	0/1:0,129:32:129:1.00:2
chr3	195517124	rs1806440	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,42:30:112:0.375:2	0/1:70,64:32:134:0.478:2	./.	./.
chr3	195517258	rs1106502	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,188:31:188:1.00:2	0/1:0,125:31:125:1.00:2	0/1:0,23:31:23:1.00:2	0/1:121,68:31:189:0.360:2	0/1:91,66:31:157:0.420:2	0/1:0,182:30:183:1.00:2	0/1:3,130:31:133:0.977:2	0/1:0,174:30:174:1.00:2	0/1:0,170:32:170:1.00:2	0/1:108,77:31:185:0.416:2	0/1:0,167:30:167:1.00:2
chr3	195517321	rs1104760	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,175:32:175:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,15:31:15:1.00:2	0/1:105,79:31:184:0.429:2	0/1:85,54:31:139:0.388:2	0/1:0,163:30:163:1.00:2	0/1:1,120:31:121:0.992:2	0/1:0,168:31:168:1.00:2	0/1:0,181:31:181:1.00:2	0/1:91,83:31:174:0.477:2	0/1:1,183:31:184:0.995:2
chr3	195517553	rs882605	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,186:32:186:1.00:2	0/1:0,164:32:164:1.00:2	0/1:0,25:32:25:1.00:2	0/1:86,97:33:183:0.530:2	0/1:94,94:31:188:0.500:2	0/1:1,181:32:182:0.995:2	0/1:2,170:32:172:0.988:2	0/1:1,195:32:196:0.995:2	0/1:0,187:33:187:1.00:2	0/1:97,95:32:192:0.495:2	0/1:2,179:32:181:0.989:2
chr3	195517909	rs729593	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,80:31:190:0.421:2	./.	./.	./.	./.	./.	./.	./.
chr3	195518330	rs3107764	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:33:103:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,6:33:6:1.00:2	0/1:86,48:33:134:0.358:2	0/1:77,45:33:122:0.369:2	0/1:118,4:31:122:0.033:2	0/1:2,94:32:96:0.979:2	0/1:94,48:31:143:0.338:2	0/1:59,61:33:121:0.508:2	0/1:51,59:33:110:0.536:2	0/1:2,111:33:113:0.982:2
chr3	195591056	rs13433937	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,11:31:26:0.440:2	0/1:10,14:32:24:0.583:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,12:31:39:0.308:2
chr3	195594805	rs1056749	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.
chr3	195594950	rs56260729	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,14:31:20:0.700:2	0/1:2,8:31:10:0.800:2	./.	./.	./.	0/1:0,8:33:8:1.00:2	./.	./.
chr3	195594957	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,22:32:35:0.629:2	./.	./.	./.	./.	./.
chr3	195595054	rs7516	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,24:30:51:0.471:2	./.	./.	./.	./.	./.
chr3	195595348	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	195599186	rs200985709	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,15:10:76:0.197:2	./.	./.	./.	./.	0/1:38,18:8:56:0.321:2	./.
chr3	195605449	rs55842111	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,16:32:37:0.432:2	./.	./.	./.
chr3	195615376	rs3747669	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:26:8:0.375:2	0/1:56,47:27:105:0.456:2	0/1:53,46:28:99:0.465:2	0/1:66,56:30:122:0.459:2	0/1:63,53:30:116:0.457:2	0/1:70,42:29:112:0.375:2	0/1:51,61:29:112:0.545:2	./.	./.
chr3	195778972	rs1805051	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,35:32:70:0.500:2	0/1:29,20:31:49:0.408:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,57:31:114:0.500:2
chr3	195794455	rs200128950	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:33:129:0.031:2	./.	./.	./.	./.	./.
chr3	195796333	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:33:152:0.026:2	./.	./.	./.	./.	./.
chr3	195800811	rs3817672	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:32,31:33:63:0.492:2	0/1:6,15:33:21:0.714:2	./.	./.	0/1:24,36:33:60:0.600:2	./.	./.	0/1:1,98:32:99:0.990:2	0/1:24,25:33:49:0.510:2	./.	0/1:2,84:32:86:0.977:2
chr3	195936382	rs11719281	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:27,26:33:53:0.491:2	0/1:17,13:31:30:0.433:2	./.	./.	0/1:26,32:32:58:0.552:2	./.	./.	./.	./.	./.	0/1:17,24:32:41:0.585:2
chr3	195937558	rs13315830	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,75:32:150:0.500:2	./.	./.	./.	./.	./.
chr3	195938177	rs1522394	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:33:6:0.667:2	./.	0/1:48,25:32:73:0.342:2	0/1:44,41:32:85:0.482:2	0/1:52,23:32:75:0.307:2	./.	0/1:0,34:32:34:1.00:2	./.	./.
chr3	195943554	rs35762113	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:32:42:0.095:2	./.	./.	./.
chr3	195943566	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,3:32:30:0.100:2	./.	./.
chr3	195955762	rs939885	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:46,44:30:90:0.489:2	0/1:18,30:31:48:0.625:2	./.	0/1:1,118:31:119:0.992:2	./.	./.	0/1:79,61:30:140:0.436:2	0/1:3,116:31:119:0.975:2	0/1:0,104:31:104:1.00:2	0/1:58,51:29:109:0.468:2	./.
chr3	195956827	rs17852687	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,116:30:116:1.00:2	./.	./.	0/1:67,65:30:132:0.492:2	0/1:82,65:30:147:0.442:2	0/1:0,94:31:94:1.00:2	0/1:44,56:31:100:0.560:2	./.
chr3	195984722	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:34:40:0.100:2	./.	./.	./.
chr3	196050728	rs146878860	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,38:32:97:0.396:2	./.	./.	./.	./.	./.
chr3	196050834	rs35643777	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,33:30:69:0.478:2	./.	0/1:42,31:31:73:0.425:2	./.	0/1:42,33:32:75:0.440:2	./.	./.	./.
chr3	196050862	rs36016914	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,29:32:53:0.547:2	./.	./.	./.
chr3	196054439	rs6785339	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,35:31:66:0.530:2	0/1:20,16:29:36:0.444:2	./.	0/1:2,73:30:75:0.973:2	0/1:53,67:31:120:0.558:2	0/1:49,38:30:87:0.437:2	0/1:0,133:30:133:1.00:2	0/1:64,61:31:125:0.488:2	0/1:0,84:31:84:1.00:2	0/1:46,42:30:88:0.477:2	./.
chr3	196098807	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:33:88:0.045:2	./.	./.
chr3	196199204	rs3796129	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,53:32:115:0.461:2	0/1:42,37:32:79:0.468:2	0/1:0,11:31:11:1.00:2	0/1:36,41:31:77:0.532:2	./.	./.	0/1:52,28:31:80:0.350:2	./.	0/1:1,92:32:93:0.989:2	0/1:36,44:31:80:0.550:2	0/1:1,163:31:164:0.994:2
chr3	196199338	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:161,6:32:167:0.036:2	./.	./.	./.	./.	./.	./.	./.
chr3	196235191	rs73891273	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,11:30:29:0.379:2	./.	./.	./.	./.	./.
chr3	196242057	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:31:105:0.038:2	./.	./.	./.
chr3	196281208	rs9311	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:116,78:32:194:0.402:2	0/1:123,72:31:195:0.369:2	0/1:1,34:31:35:0.971:2	./.	0/1:6,191:30:197:0.970:2	./.	./.	./.	0/1:2,189:32:191:0.990:2	./.	0/1:4,182:32:186:0.978:2
chr3	196281263	rs61730533	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,83:30:192:0.432:2	./.	./.	./.	./.	./.
chr3	196386964	rs1798631	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,15:27:15:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,3:30:3:1.00:2	0/1:18,28:29:46:0.609:2	0/1:20,17:29:37:0.459:2	0/1:0,36:27:36:1.00:2	0/1:0,32:27:32:1.00:2	0/1:0,31:28:31:1.00:2	0/1:16,15:30:31:0.484:2	0/1:20,12:29:32:0.375:2	0/1:0,27:29:27:1.00:2
chr3	196388099	rs62623661	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,68:32:135:0.504:2	0/1:97,62:32:159:0.390:2	./.	./.	./.
chr3	196388401	rs13084645	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:30:13:0.538:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	196388416	rs62636584	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,44:33:87:0.506:2	./.	./.
chr3	196435534	rs6776064	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,12:27:32:0.375:2	0/1:21,9:27:30:0.300:2	./.	0/1:18,26:29:44:0.591:2	./.	0/1:0,36:30:36:1.00:2	0/1:1,27:28:28:0.964:2	0/1:20,27:29:47:0.574:2
chr3	196438826	rs7639719	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,30:31:71:0.423:2	./.	./.	./.	0/1:44,34:33:78:0.436:2	./.	./.
chr3	196443803	rs1906044	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,6:30:7:0.857:2	0/1:13,8:29:21:0.381:2	0/1:10,8:30:18:0.444:2	0/1:0,27:30:27:1.00:2	0/1:19,9:30:28:0.321:2	0/1:17,20:28:37:0.541:2	0/1:0,41:32:41:1.00:2	0/1:0,19:29:19:1.00:2	0/1:0,38:30:38:1.00:2
chr3	196449397	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,4:34:75:0.053:2	./.	./.	./.	./.	./.	./.	./.
chr3	196460680	rs34830136	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:31:15:0.533:2	./.	./.	0/1:79,63:32:142:0.444:2	./.	0/1:76,88:32:164:0.537:2	./.	./.	0/1:86,59:33:145:0.407:2
chr3	196509522	rs67093638	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:85,4:29:89:0.045:2	./.	./.	./.	./.	0/1:83,5:32:88:0.057:2	./.
chr3	196509544	rs79361419	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,10:31:75:0.133:2	./.	./.	0/1:117,18:31:135:0.133:2	0/1:118,9:30:127:0.071:2	0/1:146,6:32:152:0.039:2	./.	0/1:145,8:33:153:0.052:2	0/1:99,7:30:106:0.066:2	./.
chr3	196509577	rs76714248	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:104,7:31:111:0.063:2	0/1:60,14:32:74:0.189:2	./.	./.	0/1:128,27:30:156:0.174:2	0/1:136,10:32:146:0.068:2	0/1:161,6:33:167:0.036:2	./.	0/1:170,9:33:179:0.050:2	0/1:112,9:33:121:0.074:2	./.
chr3	196509640	rs7620283	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:84,6:31:90:0.067:2	0/1:27,4:32:31:0.129:2	./.	./.	0/1:59,11:31:70:0.157:2	0/1:75,4:32:79:0.051:2	./.	./.	./.	./.	0/1:98,4:32:102:0.039:2
chr3	196509652	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,4:32:52:0.077:2	./.	./.	./.	./.	./.	0/1:86,4:33:90:0.044:2
chr3	196529902	rs201465227	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,3:32:44:0.068:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,5:33:96:0.052:2
chr3	196529926	rs77470308	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:63,9:33:72:0.125:2	0/1:40,9:33:49:0.184:2	./.	0/1:74,6:33:80:0.075:2	0/1:67,14:31:81:0.173:2	0/1:69,7:32:76:0.092:2	0/1:60,14:32:74:0.189:2	./.	0/1:80,6:32:86:0.070:2	./.	0/1:93,5:32:98:0.051:2
chr3	196529978	rs79726945	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:45,15:33:60:0.250:2	0/1:27,12:32:39:0.308:2	./.	0/1:63,13:33:76:0.171:2	0/1:61,15:32:76:0.197:2	0/1:57,6:29:63:0.095:2	0/1:39,18:33:57:0.316:2	0/1:65,6:31:71:0.085:2	0/1:79,8:33:87:0.092:2	./.	./.
chr3	196529982	rs78043821	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,3:32:43:0.070:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	196530013	rs73205842	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:27,8:32:35:0.229:2	0/1:25,5:31:30:0.167:2	./.	0/1:43,8:32:51:0.157:2	./.	./.	0/1:20,5:31:25:0.200:2	./.	0/1:53,4:32:57:0.070:2	./.	./.
chr3	196530022	rs115224945	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:25,6:32:31:0.194:2	0/1:22,4:31:26:0.154:2	./.	0/1:36,7:31:43:0.163:2	./.	./.	0/1:19,4:31:23:0.174:2	./.	./.	0/1:41,3:32:44:0.068:2	./.
chr3	196544948	rs56172538	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,33:32:71:0.465:2	./.	./.	./.	./.	0/1:41,33:33:74:0.446:2
chr3	196544992	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,3:32:40:0.075:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	196545017	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,3:34:30:0.100:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	196547368	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:32:112:0.036:2	./.
chr3	196554074	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:33:125:0.032:2	./.
chr3	196554095	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:31:119:0.034:2	./.
chr3	196554119	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:32:82:0.049:2	./.
chr3	196613072	rs34251880	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:30:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr3	196613075	rs34533379	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:16,15:32:31:0.484:2	0/1:16,16:32:32:0.500:2	0/1:2,3:32:5:0.600:2	./.	./.	0/1:43,34:31:78:0.442:2	./.	0/1:52,50:32:102:0.490:2	./.	./.	./.
chr3	196657767	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:33:97:0.041:2	./.	./.	./.	./.
chr3	196674307	rs17855662	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,27:31:54:0.500:2	./.	./.	./.	./.	./.	./.
chr3	196674518	rs1147238	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,40:33:89:0.449:2	./.	0/1:1,101:32:102:0.990:2	./.	0/1:1,92:32:93:0.989:2	./.	./.	./.
chr3	196674613	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:31:151:0.026:2	./.	./.	./.
chr3	196674749	rs4916589	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:21,10:33:31:0.323:2	0/1:10,7:32:17:0.412:2	0/1:0,7:32:7:1.00:2	./.	0/1:1,23:31:24:0.958:2	0/1:0,27:32:27:1.00:2	0/1:3,8:33:11:0.727:2	0/1:10,17:31:27:0.630:2	0/1:17,24:34:41:0.585:2	./.	0/1:9,7:33:16:0.438:2
chr3	196674879	rs12636891	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:14,14:34:28:0.500:2	0/1:10,10:32:20:0.500:2	0/1:0,6:33:6:1.00:2	./.	0/1:0,49:32:49:1.00:2	0/1:0,31:32:31:1.00:2	0/1:27,39:33:66:0.591:2	./.	0/1:27,25:33:52:0.481:2	0/1:14,10:34:24:0.417:2	./.
chr3	196674916	rs1147240	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,6:30:8:0.750:2	0/1:22,11:28:33:0.333:2	0/1:26,25:28:51:0.490:2	0/1:0,27:27:27:1.00:2	0/1:58,6:32:64:0.094:2	0/1:38,15:29:53:0.283:2	0/1:23,18:31:41:0.439:2	0/1:18,11:30:29:0.379:2	0/1:10,14:29:24:0.583:2
chr3	196674972	rs574365	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,20:29:41:0.488:2	0/1:4,12:31:16:0.750:2	0/1:0,3:29:3:1.00:2	0/1:21,11:28:32:0.344:2	0/1:0,36:29:36:1.00:2	0/1:12,13:31:25:0.520:2	0/1:12,26:30:38:0.684:2	0/1:1,30:31:31:0.968:2	0/1:17,17:26:34:0.500:2	0/1:15,9:31:24:0.375:2	0/1:18,12:29:30:0.400:2
chr3	196674973	rs573708	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,19:30:41:0.463:2	0/1:4,12:28:16:0.750:2	0/1:0,3:28:3:1.00:2	0/1:21,11:28:32:0.344:2	0/1:0,36:28:36:1.00:2	0/1:12,13:30:25:0.520:2	0/1:12,26:29:38:0.684:2	0/1:1,30:29:31:0.968:2	0/1:16,18:27:34:0.529:2	0/1:16,9:29:25:0.360:2	0/1:18,12:30:30:0.400:2
chr3	196735808	rs41284045	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,67:31:137:0.489:2	./.	./.	./.	./.	./.	./.	./.
chr3	196736575	rs41284047	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,34:32:70:0.486:2	./.	./.	./.	./.	./.	./.	./.
chr3	196742290	rs9855410	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,11:30:14:0.786:2	./.	./.	0/1:0,81:29:81:1.00:2	0/1:49,41:30:90:0.456:2	0/1:77,53:29:130:0.408:2	./.	0/1:37,46:30:83:0.554:2	./.
chr3	196742301	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:32:127:0.031:2	./.	./.	./.
chr3	196743130	rs6779362	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,58:29:58:1.00:2	0/1:46,43:30:89:0.483:2	0/1:71,44:28:115:0.383:2	./.	0/1:33,25:31:58:0.431:2	./.
chr3	196746629	rs1056664	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,8:33:22:0.364:2	./.	./.	0/1:92,101:33:193:0.523:2	0/1:106,85:33:191:0.445:2	0/1:93,96:33:189:0.508:2	./.	0/1:71,57:32:128:0.445:2	./.
chr3	196771513	rs34492126	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,46:33:116:0.397:2
chr3	196771554	rs35370245	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,47:33:112:0.420:2
chr3	196865242	rs1134986	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,28:32:50:0.560:2	0/1:10,16:31:26:0.615:2	./.	0/1:39,20:32:59:0.339:2	0/1:20,31:32:51:0.608:2	0/1:17,28:30:46:0.622:2	./.	0/1:46,16:32:62:0.258:2	0/1:33,34:33:67:0.507:2	./.	0/1:33,32:32:65:0.492:2
chr3	196921360	rs1802668	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,33:33:59:0.559:2	./.	./.	./.	./.	0/1:42,41:33:83:0.494:2
chr3	197238993	rs367827020	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:33:116:0.034:2
chr3	197241286	rs35089738	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,53:32:148:0.358:2	./.	./.	./.	./.
chr3	197401415	rs114814977	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,39:30:88:0.443:2	./.	./.	./.	./.	./.
chr3	197401952	rs28562770	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,8:31:25:0.320:2	./.	./.	./.	./.	./.
chr3	197401986	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,5:25:24:0.208:2	./.
chr3	197427515	rs116791711	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,66:33:141:0.468:2
chr3	197427708	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:31:135:0.030:2	./.	./.	./.	./.	./.
chr3	197482687	rs7624719	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,20:32:54:0.370:2	./.	./.	./.	./.	./.
chr3	197495334	rs3205525	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:33:30:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,3:32:3:1.00:2	0/1:19,22:32:41:0.537:2	0/1:0,25:32:25:1.00:2	./.	0/1:0,24:31:24:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,35:32:35:1.00:2
chr3	197518173	rs143455842	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,8:31:25:0.320:2	./.	./.	./.	./.	./.	./.	./.
chr3	197562603	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:31:145:0.028:2	./.	./.	./.
chr3	197566254	rs17850206	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,29:32:73:0.397:2	0/1:15,19:33:34:0.559:2	0/1:37,31:33:68:0.456:2	./.	./.	0/1:62,53:33:115:0.461:2
chr3	197574254	rs73892123	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,36:32:70:0.514:2	./.	./.	./.	./.	./.
chr3	197579466	rs36078463	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,57:33:112:0.509:2	0/1:38,31:33:69:0.449:2	./.	./.	./.	0/1:60,74:34:134:0.552:2	./.	./.
chr3	197597044	rs77281724	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:41,46:31:87:0.529:2	0/1:42,25:32:67:0.373:2	./.	./.	./.	./.	./.	0/1:72,41:31:113:0.363:2	./.	./.	0/1:59,39:32:98:0.398:2
chr3	197659160	rs67877771	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:38,49:33:87:0.563:2	0/1:33,34:32:67:0.507:2	./.	0/1:51,45:32:96:0.469:2	0/1:43,31:32:74:0.419:2	./.	./.	./.	0/1:54,52:33:106:0.491:2	./.	./.
chr3	197665546	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,79:33:169:0.467:2	./.	./.	./.	./.
chr3	197665599	rs9880989	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:91,82:32:173:0.474:2	0/1:59,36:32:95:0.379:2	./.	0/1:101,60:32:161:0.373:2	0/1:79,34:31:113:0.301:2	./.	./.	./.	0/1:101,76:32:177:0.429:2	./.	./.
chr3	197670652	rs3828371	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,38:31:76:0.500:2	./.	./.	./.	./.	./.	./.
chr3	197682658	rs113566077	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,26:30:52:0.500:2	./.	./.	./.	./.	./.
chr3	197687252	rs114780577	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,38:32:100:0.380:2	./.	./.	./.	./.	./.	./.	./.
chr3	197701913	rs7373165	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,23:33:47:0.489:2	0/1:27,12:32:39:0.308:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	197712759	rs7373242	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:26,28:33:54:0.519:2	0/1:14,18:33:32:0.563:2	./.	0/1:77,7:32:84:0.083:2	./.	./.	./.	./.	./.	./.	./.
chr3	197748355	rs35267865	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,55:31:122:0.455:2	./.	./.	./.	./.	./.	./.	./.
chr3	197879276	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:179,4:32:183:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr3	197879304	rs200898646	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:154,27:28:181:0.149:2	0/1:142,18:28:160:0.113:2	./.	./.	./.	./.	./.	./.	./.	0/1:168,19:30:187:0.102:2	./.
chr3	197879319	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:146,25:30:171:0.146:2	0/1:140,21:31:161:0.130:2	0/1:25,6:29:31:0.194:2	0/1:129,38:29:167:0.228:2	0/1:138,57:29:195:0.292:2	0/1:156,27:29:183:0.148:2	0/1:141,52:29:193:0.269:2	0/1:169,29:28:198:0.146:2	0/1:109,63:31:172:0.366:2	0/1:176,19:30:195:0.097:2	0/1:86,84:30:170:0.494:2
chr3	197879345	.	T	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:157,8:30:165:0.048:2	0/1:184,6:30:190:0.032:2	0/1:165,13:31:178:0.073:2	0/1:171,22:26:193:0.114:2	0/1:181,16:28:197:0.081:2	./.	./.	0/1:172,11:31:183:0.060:2
chr3	197880129	rs201793025	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:136,15:29:151:0.099:2	0/1:121,40:30:161:0.248:2	./.	./.	./.	./.	./.	./.	./.	0/1:117,47:30:164:0.287:2	./.
chr3	197880133	.	A	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:103,11:28:114:0.096:2	./.	0/1:87,14:28:101:0.139:2	0/1:133,25:27:158:0.158:2	0/1:96,17:28:113:0.150:2	0/1:130,24:27:154:0.156:2	0/1:140,22:27:162:0.136:2	0/1:97,24:28:121:0.198:2	0/1:125,14:27:140:0.101:2	0/1:126,29:27:155:0.187:2
chr3	197880139	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:140,18:27:158:0.114:2	0/1:129,15:24:145:0.104:2	0/1:21,3:30:24:0.125:2	./.	./.	./.	./.	./.	./.	0/1:139,4:30:143:0.028:2	./.
chr3	197880145	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:171,12:26:183:0.066:2	./.	./.	0/1:181,14:27:195:0.072:2	./.	./.	0/1:177,15:26:192:0.078:2	0/1:163,28:25:193:0.147:2	./.	0/1:172,15:26:187:0.080:2	./.
chr3	197880148	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:170,12:27:182:0.066:2	./.	./.	0/1:178,15:26:193:0.078:2	./.	./.	0/1:172,17:25:189:0.090:2	0/1:161,31:26:192:0.161:2	./.	0/1:174,13:28:187:0.070:2	./.
chr3	197880272	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:32:194:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	197882506	rs200246659	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,28:33:110:0.255:2	0/1:34,18:31:52:0.346:2	0/1:1,7:31:8:0.875:2	0/1:90,41:32:131:0.313:2	0/1:78,24:31:102:0.235:2	0/1:0,67:31:67:1.00:2	0/1:69,35:31:104:0.337:2	0/1:96,39:32:135:0.289:2	0/1:77,28:32:105:0.267:2	0/1:2,60:32:62:0.968:2	0/1:79,28:32:107:0.262:2
chr3	197884212	rs201015075	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.
chr3	197884356	rs373789380	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,3:34:22:0.136:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr3	197884362	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,3:30:10:0.300:2	./.	./.	./.	./.	./.	0/1:11,5:32:16:0.313:2	./.	0/1:11,4:32:15:0.267:2	./.
chr3	197884429	rs375864893	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,3:34:24:0.125:2	./.	./.	./.	0/1:26,4:33:30:0.133:2	0/1:21,3:34:24:0.125:2	0/1:16,3:33:19:0.158:2	0/1:11,5:33:16:0.313:2
chr3	197894649	rs202220310	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,5:27:24:0.208:2	./.	./.	./.	0/1:122,22:28:144:0.153:2	0/1:160,35:28:196:0.179:2	./.	0/1:135,48:28:183:0.262:2	0/1:161,29:26:190:0.153:2
chr3	197894694	rs61793575	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:139,45:32:184:0.245:2	0/1:131,57:31:188:0.303:2	0/1:36,7:30:43:0.163:2	./.	0/1:191,6:31:197:0.030:2	./.	0/1:145,24:31:169:0.142:2	./.	./.	./.	0/1:173,7:32:180:0.039:2
chr3	197894713	rs61793576	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:122,55:32:177:0.311:2	0/1:121,67:32:188:0.356:2	0/1:36,14:32:50:0.280:2	0/1:182,11:32:193:0.057:2	0/1:185,12:32:197:0.061:2	0/1:187,7:32:194:0.036:2	0/1:137,36:32:173:0.208:2	0/1:183,7:30:190:0.037:2	0/1:185,4:33:189:0.021:2	0/1:177,6:32:183:0.033:2	0/1:172,9:29:181:0.050:2
chr3	197894720	rs143213060	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:127,58:29:185:0.314:2	0/1:125,65:30:190:0.342:2	0/1:41,11:29:52:0.212:2	./.	0/1:188,6:28:194:0.031:2	./.	0/1:136,38:29:174:0.218:2	./.	./.	0/1:177,9:28:186:0.048:2	./.
chr3	197896638	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:95,10:34:105:0.095:2	0/1:58,9:33:67:0.134:2	./.	./.	0/1:46,8:32:54:0.148:2	./.	./.	0/1:130,19:33:149:0.128:2	./.	./.	./.
chr3	197896656	rs181045496	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:153,16:31:169:0.095:2	0/1:77,13:31:90:0.144:2	0/1:23,11:31:34:0.324:2	0/1:156,41:30:197:0.208:2	0/1:64,20:31:86:0.238:2	0/1:85,24:29:109:0.220:2	0/1:129,38:30:167:0.228:2	0/1:158,39:30:198:0.198:2	0/1:148,50:32:198:0.253:2	0/1:139,59:31:198:0.298:2	0/1:142,54:30:196:0.276:2
chr3	197896665	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,33:32:198:0.168:2	./.
chr3	197896697	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,16:32:56:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	53360	rs75858144	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:82,7:33:89:0.079:2	./.	./.	0/1:57,7:34:64:0.109:2	./.	0/1:81,6:31:87:0.069:2	./.	./.	0/1:82,14:32:96:0.146:2	./.	./.
chr4	53428	rs2859214	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:30:43:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,2:30:2:1.00:2	0/1:0,12:29:12:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,35:30:35:1.00:2	0/1:1,23:31:24:0.958:2	0/1:0,21:30:21:1.00:2	0/1:0,22:28:22:1.00:2
chr4	59350	rs6834707	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:182,14:29:196:0.071:2	0/1:112,16:30:128:0.125:2	./.	0/1:145,33:30:178:0.185:2	./.	0/1:182,13:29:195:0.067:2	./.	./.	0/1:172,14:30:186:0.075:2	./.	./.
chr4	86022	rs74490941	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,2:33:2:1.00:2	./.	./.	0/1:0,5:31:5:1.00:2	0/1:0,2:28:2:1.00:2	0/1:0,2:29:2:1.00:2	./.	./.	0/1:0,3:32:3:1.00:2	0/1:0,2:31:2:1.00:2	./.
chr4	86023	rs78362263	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,2:31:2:1.00:2	./.	./.	0/1:0,5:30:5:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,2:29:2:1.00:2	./.	./.	0/1:0,3:30:3:1.00:2	0/1:0,2:30:2:1.00:2	./.
chr4	86024	rs77715101	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,2:30:2:1.00:2	./.	./.	0/1:0,5:32:5:1.00:2	0/1:0,2:30:2:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.	0/1:0,3:31:3:1.00:2	0/1:0,2:34:2:1.00:2	./.
chr4	86454	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:30:41:0.098:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	86456	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:26:40:0.100:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	86738	rs2353625	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:32:64:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,104:32:105:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,89:33:89:1.00:2	0/1:0,59:33:59:1.00:2	0/1:1,117:32:118:0.992:2
chr4	86798	rs3789149	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,69:32:69:1.00:2	./.	./.	./.	./.	0/1:35,16:33:51:0.314:2	./.	./.
chr4	87113	rs2006748	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,26:33:26:1.00:2	./.	./.	./.	./.	0/1:17,11:33:28:0.393:2	./.	./.
chr4	87134	rs10012284	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,13:30:25:0.520:2	0/1:8,8:30:16:0.500:2	./.	./.	./.	0/1:10,10:31:20:0.500:2	./.	./.	./.	./.	./.
chr4	87277	rs2006764	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:32:63:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,3:34:3:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,97:33:97:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,56:33:56:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,72:34:72:1.00:2	0/1:0,73:33:73:1.00:2	0/1:0,71:33:72:1.00:2
chr4	155713	rs7440274	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:23,18:30:41:0.439:2	0/1:7,9:28:16:0.563:2	./.	0/1:0,26:30:26:1.00:2	./.	0/1:26,15:29:41:0.366:2	./.	./.	0/1:9,15:30:24:0.625:2	./.	0/1:28,24:30:52:0.462:2
chr4	264941	rs11731285	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,16:27:37:0.432:2	0/1:12,15:27:27:0.556:2	./.	0/1:11,21:28:32:0.656:2	0/1:13,10:25:23:0.435:2	./.	./.	./.	./.	./.	0/1:19,15:30:34:0.441:2
chr4	265103	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:31:61:0.066:2	./.	./.	./.
chr4	265104	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:32:62:0.065:2	./.	./.	./.
chr4	265139	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:31:45:0.089:2	./.	./.	./.
chr4	266090	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,5:32:109:0.046:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	266129	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2
chr4	266171	rs115069723	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,59:32:122:0.484:2	./.
chr4	289272	rs112132883	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,55:31:130:0.423:2	./.
chr4	289873	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,4:33:80:0.050:2	./.	./.	./.	./.	./.	./.	./.
chr4	289885	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,4:32:61:0.066:2	./.	./.	./.	./.	./.	./.	./.
chr4	331740	rs3749523	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,19:30:38:0.500:2	0/1:9,7:32:16:0.438:2	./.	./.	./.	0/1:0,39:31:39:1.00:2	./.	./.	0/1:54,36:32:90:0.400:2	./.	./.
chr4	337638	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,5:34:131:0.038:2
chr4	337688	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:31:68:0.059:2	./.	./.	./.
chr4	338129	rs75245145	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,4:31:39:0.103:2	./.	./.
chr4	338156	rs79227679	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:33:74:0.054:2	./.	./.
chr4	338186	rs78725891	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:33:105:0.038:2	./.	./.
chr4	367201	rs111394409	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,4:32:27:0.148:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	367566	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,3:33:53:0.057:2	./.	./.	./.	./.
chr4	436658	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,3:33:52:0.058:2	./.	./.	./.
chr4	437221	rs114734668	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,21:33:38:0.553:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	437249	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:33:55:0.073:2	./.
chr4	437319	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,3:31:25:0.120:2
chr4	437330	rs201312587	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,3:31:29:0.103:2
chr4	437728	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,5:32:91:0.055:2
chr4	437749	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,5:33:82:0.061:2
chr4	437831	rs72501950	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	0/1:0,60:31:60:1.00:2	./.	./.	0/1:46,44:32:90:0.489:2	./.	./.
chr4	438067	rs73070365	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,43:33:85:0.506:2	0/1:17,22:33:39:0.564:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	515489	rs13115344	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,11:31:29:0.379:2	./.	0/1:115,83:31:198:0.419:2	0/1:105,92:31:197:0.467:2	0/1:87,110:32:197:0.558:2	./.	0/1:98,95:33:193:0.492:2	./.	./.
chr4	517376	rs7666226	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,9:30:17:0.529:2	./.	0/1:92,104:30:196:0.531:2	0/1:101,88:30:189:0.466:2	0/1:96,99:30:195:0.508:2	./.	0/1:107,78:31:185:0.422:2	./.	./.
chr4	517461	rs7666425	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,13:29:20:0.650:2	./.	0/1:70,89:28:159:0.560:2	0/1:72,91:29:163:0.558:2	0/1:64,81:28:145:0.559:2	./.	0/1:79,66:29:145:0.455:2	./.	./.
chr4	517579	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,4:34:81:0.049:2	./.	./.	./.	./.	./.	./.	./.
chr4	517622	rs13150531	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,9:31:14:0.643:2	./.	0/1:69,68:32:137:0.496:2	0/1:61,48:31:109:0.440:2	0/1:42,47:32:89:0.528:2	./.	0/1:42,47:33:89:0.528:2	./.	./.
chr4	520853	rs13114026	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,13:28:31:0.419:2	./.	0/1:119,75:30:194:0.387:2	0/1:108,78:30:186:0.419:2	0/1:91,91:30:182:0.500:2	./.	0/1:106,69:31:175:0.394:2	./.	./.
chr4	527677	rs34623004	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,12:31:13:0.923:2	./.	0/1:74,65:32:139:0.468:2	0/1:78,51:31:129:0.395:2	0/1:63,59:32:123:0.484:2	0/1:151,6:24:157:0.038:2	0/1:66,71:33:137:0.518:2	./.	./.
chr4	533001	rs1127410	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,39:32:39:1.00:2	0/1:192,4:32:196:0.020:2	0/1:91,73:32:164:0.445:2	0/1:105,78:31:183:0.426:2	0/1:105,75:31:180:0.417:2	./.	0/1:114,80:33:195:0.412:2	./.	./.
chr4	647931	rs75695239	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,20:30:52:0.385:2	./.	./.	0/1:23,22:31:45:0.489:2	./.	./.
chr4	648643	rs10902758	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:30:62:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,106:30:106:1.00:2	0/1:0,92:30:92:1.00:2	0/1:0,68:30:68:1.00:2	0/1:0,124:31:124:1.00:2	0/1:0,134:31:134:1.00:2	0/1:0,92:31:92:1.00:2	0/1:0,77:31:77:1.00:2	0/1:0,96:31:96:1.00:2
chr4	648653	rs151029036	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:32:118:0.034:2	./.	./.	./.	./.
chr4	663908	rs28675771	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,20:30:57:0.351:2	0/1:21,13:30:34:0.382:2	0/1:0,6:31:6:1.00:2	0/1:33,40:31:73:0.548:2	0/1:20,21:30:41:0.512:2	0/1:29,39:30:68:0.574:2	0/1:21,29:30:50:0.580:2	./.	0/1:0,36:31:36:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,68:30:68:1.00:2
chr4	663916	rs61760239	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:30:6:0.667:2	./.	0/1:13,16:30:29:0.552:2	./.	./.	./.	./.	./.	./.
chr4	666255	rs138048392	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,23:32:59:0.390:2	./.	./.	./.
chr4	673803	rs372141639	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,47:30:104:0.452:2	0/1:47,35:30:82:0.427:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	674299	rs200452939	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,10:17:90:0.111:2	0/1:92,15:14:107:0.140:2	./.	./.	./.
chr4	728817	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:121,4:30:125:0.032:2	./.	./.	./.	./.	./.	./.
chr4	843531	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,64:34:151:0.424:2	./.	./.
chr4	843549	rs201472926	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:150,4:32:154:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr4	843695	rs8093	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:27:6:1.00:2	0/1:10,7:28:17:0.412:2	0/1:0,7:25:7:1.00:2	./.	0/1:0,8:26:8:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,21:28:21:1.00:2	0/1:0,3:30:3:1.00:2
chr4	843720	rs2306242	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:32:4:0.750:2
chr4	844781	rs75072999	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:84,95:32:181:0.531:2	0/1:71,47:31:118:0.398:2	0/1:12,16:31:28:0.571:2	./.	./.	./.	./.	0/1:112,82:31:194:0.423:2	0/1:115,73:32:188:0.388:2	./.	./.
chr4	858941	rs1026738	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:28:47:1.00:2	0/1:0,24:29:24:1.00:2	0/1:0,11:28:11:1.00:2	0/1:0,57:29:57:1.00:2	0/1:0,52:28:52:1.00:2	0/1:0,58:29:58:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,61:30:61:1.00:2	0/1:0,34:26:34:1.00:2	0/1:0,33:29:33:1.00:2
chr4	860192	rs1064207	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,21:28:48:0.438:2	0/1:14,10:30:24:0.417:2	0/1:0,6:27:6:1.00:2	0/1:3,60:29:63:0.952:2	0/1:58,40:26:98:0.408:2	0/1:65,27:27:92:0.293:2	./.	0/1:2,73:26:75:0.973:2	0/1:1,70:28:71:0.986:2	0/1:64,41:28:105:0.390:2	0/1:0,43:26:43:1.00:2
chr4	860796	rs112225848	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,10:30:14:0.714:2	./.	./.	./.	./.	./.	./.
chr4	861180	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:30:138:0.029:2	./.
chr4	862363	rs34585705	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:30:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	870941	rs41286651	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,50:33:119:0.420:2	./.	./.	./.	./.	./.	0/1:29,32:33:61:0.525:2	./.
chr4	871501	rs35964990	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,87:30:177:0.492:2	./.	./.	./.	./.	./.
chr4	882643	rs2279181	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,55:31:115:0.478:2	0/1:32,31:32:63:0.492:2	./.	./.	./.	./.	./.
chr4	891851	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,76:31:137:0.555:2	./.	./.	./.
chr4	898450	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,6:35:59:0.102:2	./.
chr4	944210	rs34884217	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:82,55:29:137:0.401:2	0/1:56,32:30:88:0.364:2	0/1:4,17:30:21:0.810:2	./.	./.	./.	./.	0/1:102,95:30:197:0.482:2	0/1:107,89:31:196:0.454:2	./.	./.
chr4	946226	rs11552301	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:13,9:28:22:0.409:2	0/1:12,14:26:26:0.538:2	./.	0/1:0,38:31:38:1.00:2	./.	0/1:32,19:29:51:0.373:2	0/1:22,26:29:48:0.542:2	0/1:0,46:30:46:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,38:28:38:1.00:2
chr4	947063	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:30:11:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	949604	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:33:76:0.053:2
chr4	949634	rs371491397	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,34:31:88:0.386:2
chr4	951947	rs34311866	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,5:32:9:0.556:2	./.	./.	./.	./.	./.	./.
chr4	954885	rs77382558	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,46:31:97:0.474:2	0/1:37,33:31:70:0.471:2	./.	./.	0/1:27,26:31:53:0.491:2	./.
chr4	960293	rs369640675	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,46:32:84:0.548:2	./.	./.
chr4	960331	rs11248059	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,44:32:71:0.620:2	./.	./.	./.	./.	./.	./.
chr4	961373	rs1377586	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,29:29:67:0.433:2	0/1:20,22:30:42:0.524:2	0/1:11,12:28:23:0.522:2	0/1:79,89:28:168:0.530:2	./.	./.	0/1:65,86:29:151:0.570:2	0/1:4,177:28:181:0.978:2	0/1:56,63:28:119:0.529:2	0/1:40,45:29:85:0.529:2	0/1:32,44:29:76:0.579:2
chr4	961397	rs2305487	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,87:28:189:0.460:2	./.	./.	./.
chr4	962100	rs76581432	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,7:31:9:0.778:2	./.	./.	./.	./.	./.
chr4	982852	rs3796621	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:7,23:32:30:0.767:2	0/1:4,3:32:7:0.429:2	0/1:0,8:32:8:1.00:2	0/1:3,12:32:15:0.800:2	./.	./.	0/1:2,4:30:6:0.667:2	0/1:0,21:31:21:1.00:2	0/1:5,5:33:10:0.500:2	0/1:14,12:31:26:0.462:2	0/1:3,10:32:13:0.769:2
chr4	983060	rs3796622	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,40:30:111:0.360:2	0/1:42,22:29:64:0.344:2	0/1:16,6:29:22:0.273:2	0/1:1,173:29:174:0.994:2	0/1:133,61:30:194:0.314:2	0/1:93,93:30:186:0.500:2	0/1:3,190:30:193:0.984:2	0/1:3,183:30:186:0.984:2	0/1:116,74:30:190:0.389:2	0/1:0,118:29:119:1.00:2	0/1:90,55:29:145:0.379:2
chr4	983668	rs59758572	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,22:32:38:0.579:2	./.	./.	./.	./.	./.
chr4	983809	rs4690221	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,10:29:21:0.476:2	0/1:9,5:32:14:0.357:2	0/1:3,6:31:9:0.667:2	0/1:13,22:29:35:0.629:2	./.	./.	0/1:3,14:30:17:0.824:2	0/1:22,16:31:38:0.421:2	0/1:12,3:32:15:0.200:2	0/1:7,20:32:27:0.741:2	0/1:8,10:32:18:0.556:2
chr4	994414	rs3755955	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,64:31:146:0.438:2	./.	0/1:96,85:32:181:0.470:2	0/1:101,92:32:193:0.477:2	./.	./.	0/1:53,73:33:126:0.579:2	./.
chr4	994452	rs3755954	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,7:32:17:0.412:2	./.	0/1:0,160:31:160:1.00:2	./.	./.	./.	0/1:76,43:33:119:0.361:2	./.	0/1:52,47:32:99:0.475:2
chr4	995305	rs6815946	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,34:29:91:0.374:2	./.	0/1:1,84:28:85:0.988:2	0/1:79,37:27:117:0.319:2	./.	./.	0/1:51,30:29:81:0.370:2	./.
chr4	995868	rs114806891	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:23,8:29:31:0.258:2	0/1:15,3:31:18:0.167:2	./.	./.	./.	./.	./.	0/1:36,23:30:59:0.390:2	./.	./.	./.
chr4	995919	rs6830825	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,8:27:21:0.381:2	./.	0/1:0,16:27:16:1.00:2	./.	./.	./.	0/1:6,6:28:12:0.500:2	./.
chr4	996165	rs6831280	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,58:29:100:0.586:2	./.	0/1:1,84:28:85:0.988:2	0/1:19,32:29:51:0.627:2	./.	./.	0/1:42,46:30:88:0.523:2	./.
chr4	996248	rs6836258	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:25:5:1.00:2	./.	./.	./.	./.	./.
chr4	1006333	rs4647942	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.
chr4	1017519	rs4647933	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:23:8:0.750:2	./.	./.	./.	./.	./.	0/1:3,4:27:7:0.571:2	./.
chr4	1018208	rs58679007	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,29:31:84:0.345:2	./.	./.	./.	./.	./.
chr4	1018271	rs4647946	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,30:29:114:0.263:2	./.	./.	./.	./.	./.	0/1:28,18:29:46:0.391:2	./.
chr4	1018705	rs4647930	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:4,3:33:7:0.429:2	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	0/1:0,14:31:14:1.00:2	./.	./.	0/1:0,3:30:3:1.00:2
chr4	1019011	rs4647932	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:39,45:32:84:0.536:2	0/1:17,27:32:44:0.614:2	0/1:5,7:30:12:0.583:2	./.	./.	./.	./.	0/1:68,74:31:142:0.521:2	./.	./.	./.
chr4	1066769	rs17728127	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:106,90:31:196:0.459:2	./.	./.	./.	./.	./.	./.
chr4	1090625	rs4045481	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,44:33:79:0.557:2	0/1:14,12:33:26:0.462:2	0/1:0,5:32:5:1.00:2	0/1:0,54:33:54:1.00:2	./.	0/1:31,29:32:60:0.483:2	0/1:0,48:32:48:1.00:2	./.	./.	0/1:0,63:33:63:1.00:2	0/1:2,52:32:55:0.963:2
chr4	1102195	rs78238785	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,58:33:111:0.523:2	./.	./.
chr4	1164277	rs2279279	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:32:86:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,12:32:12:1.00:2	0/1:2,100:32:103:0.980:2	0/1:49,49:31:98:0.500:2	0/1:42,49:31:91:0.538:2	0/1:0,82:31:82:1.00:2	0/1:0,91:32:91:1.00:2	0/1:45,49:32:94:0.521:2	0/1:0,66:32:66:1.00:2	0/1:0,73:32:73:1.00:2
chr4	1165130	rs11247975	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,6:32:6:1.00:2	0/1:0,2:34:2:1.00:2	./.	0/1:0,10:30:10:1.00:2	./.	./.	0/1:0,2:33:2:1.00:2	0/1:0,5:32:5:1.00:2	./.	0/1:0,7:30:7:1.00:2	0/1:0,2:35:2:1.00:2
chr4	1165741	rs922697	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:30:69:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,8:28:8:1.00:2	0/1:0,83:30:83:1.00:2	0/1:0,76:30:76:1.00:2	0/1:72,56:30:128:0.438:2	0/1:0,90:30:90:1.00:2	0/1:0,99:30:99:1.00:2	0/1:0,69:30:69:1.00:2	0/1:0,68:31:68:1.00:2	0/1:0,56:31:56:1.00:2
chr4	1165748	rs6836335	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,36:29:74:0.486:2	./.	./.	./.	0/1:43,24:29:67:0.358:2	./.	./.
chr4	1244416	rs1732115	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:29:49:1.00:2	0/1:0,33:29:33:1.00:2	0/1:2,5:30:7:0.714:2	0/1:0,79:29:79:1.00:2	0/1:0,112:29:112:1.00:2	0/1:64,45:29:109:0.413:2	0/1:0,124:29:124:1.00:2	0/1:0,106:29:106:1.00:2	0/1:0,66:29:66:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,57:28:57:1.00:2
chr4	1244605	rs79317050	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,23:31:38:0.605:2	./.	./.	./.	0/1:46,26:33:72:0.361:2	./.	./.
chr4	1244879	rs1564508	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,28:33:55:0.509:2	./.	0/1:42,36:32:78:0.462:2	0/1:52,43:32:95:0.453:2	./.	./.	0/1:29,31:32:60:0.517:2	0/1:0,53:32:53:1.00:2
chr4	1245277	rs2279281	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,45:31:82:0.549:2	./.	0/1:41,40:31:81:0.494:2	0/1:36,29:32:65:0.446:2	./.	./.	0/1:35,30:32:65:0.462:2	0/1:0,52:31:52:1.00:2
chr4	1245386	rs2279280	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,27:31:58:0.466:2	./.	./.	./.	./.	./.	./.	./.
chr4	1245500	rs1680030	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,47:31:48:0.979:2	0/1:0,26:31:26:1.00:2	./.	0/1:37,28:31:65:0.431:2	0/1:0,39:31:39:1.00:2	./.	0/1:35,30:31:66:0.462:2	0/1:2,52:31:54:0.963:2	0/1:25,21:31:47:0.457:2	0/1:35,12:32:47:0.255:2	./.
chr4	1245750	rs112722261	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,28:32:57:0.491:2	0/1:23,12:32:35:0.343:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	1245831	rs143287395	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,4:31:68:0.059:2	./.	./.	./.	./.	./.	./.	./.
chr4	1245990	rs12642797	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:34:4:0.750:2	./.	./.	0/1:2,6:34:8:0.750:2	0/1:0,3:33:3:1.00:2
chr4	1305799	rs34082974	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,76:30:186:0.409:2	./.	./.	./.	./.	./.
chr4	1316211	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:33:140:0.029:2	./.
chr4	1330759	rs1128427	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:30:5:1.00:2	./.	0/1:74,65:29:139:0.468:2	0/1:3,72:30:75:0.960:2	0/1:66,70:29:136:0.515:2	./.	0/1:0,59:30:59:1.00:2	0/1:45,35:29:80:0.438:2	0/1:1,61:29:62:0.984:2
chr4	1343405	rs2276903	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,18:30:18:1.00:2	./.	0/1:95,82:30:177:0.463:2	0/1:2,181:30:183:0.989:2	0/1:92,95:31:187:0.508:2	./.	0/1:1,143:31:144:0.993:2	0/1:80,66:30:147:0.452:2	0/1:0,159:30:159:1.00:2
chr4	1346903	rs77892061	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,65:32:153:0.425:2	0/1:64,75:32:139:0.540:2	./.	./.	./.	./.	0/1:60,64:33:124:0.516:2	./.
chr4	1349029	rs2276904	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,58:30:114:0.509:2	./.	./.	0/1:47,42:31:90:0.472:2	./.	./.
chr4	1369885	rs11724369	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:30:4:0.750:2	./.	./.	0/1:12,12:29:24:0.500:2	0/1:11,9:29:20:0.450:2	./.	./.	0/1:6,12:29:19:0.667:2	0/1:0,11:31:11:1.00:2
chr4	1374695	rs28614045	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,45:30:45:1.00:2	0/1:47,59:33:106:0.557:2	0/1:48,55:31:103:0.534:2	0/1:0,119:32:119:1.00:2	0/1:53,44:31:97:0.454:2	./.	0/1:0,117:33:117:1.00:2	0/1:77,70:32:147:0.476:2	0/1:0,143:33:143:1.00:2
chr4	1374774	rs28522910	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,16:30:16:1.00:2	0/1:15,24:31:39:0.615:2	0/1:13,14:31:27:0.519:2	0/1:0,37:31:37:1.00:2	0/1:4,4:30:8:0.500:2	./.	0/1:1,39:32:40:0.975:2	0/1:14,12:31:26:0.462:2	0/1:1,19:32:20:0.950:2
chr4	1377615	rs9996817	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:28:4:1.00:2	0/1:12,9:27:22:0.429:2	0/1:25,17:26:42:0.405:2	0/1:0,40:27:40:1.00:2	0/1:24,21:26:46:0.467:2	0/1:41,19:26:60:0.317:2	0/1:0,26:29:26:1.00:2	0/1:21,13:31:34:0.382:2	0/1:0,22:29:22:1.00:2
chr4	1388324	rs74377230	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,22:30:147:0.150:2	0/1:138,5:32:144:0.035:2	./.	./.	0/1:102,4:33:106:0.038:2	0/1:95,6:34:101:0.059:2
chr4	1388350	rs77782813	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,31:28:169:0.183:2	0/1:120,7:30:127:0.055:2	./.	./.	0/1:92,12:30:104:0.115:2	0/1:67,16:29:83:0.193:2
chr4	1388378	rs55884223	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:30:7:0.429:2	./.	./.	0/1:147,17:32:164:0.104:2	0/1:72,9:31:81:0.111:2	./.	./.	0/1:73,12:31:85:0.141:2	0/1:32,14:31:46:0.304:2
chr4	1388379	rs56109734	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,17:31:165:0.103:2	0/1:73,8:30:81:0.099:2	./.	./.	0/1:74,11:30:85:0.129:2	0/1:33,14:31:47:0.298:2
chr4	1388413	rs78309237	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:29:5:0.600:2	./.	./.	0/1:112,50:31:162:0.309:2	0/1:33,13:31:46:0.283:2	./.	./.	0/1:41,30:30:71:0.423:2	0/1:1,34:30:35:0.971:2
chr4	1388429	rs79298048	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:30:5:0.600:2	./.	./.	0/1:119,48:28:167:0.287:2	0/1:31,20:32:51:0.392:2	./.	./.	0/1:51,25:30:78:0.329:2	0/1:1,24:30:25:0.960:2
chr4	1388441	rs144787346	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,25:26:92:0.272:2	./.	./.	./.	./.	./.	./.	./.
chr4	1388444	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,11:27:94:0.117:2	./.	./.	./.	./.	./.	./.	./.
chr4	1388446	rs3210561	C	A,G	.	PASS	AC=1,1;AF=0.167,0.167;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0/2:28:95:0.126:2	./.	./.	./.	./.	./.	./.	0/1:29:36:0.111:2
chr4	1388450	rs13111164	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,12:27:97:0.124:2	./.	./.	./.	./.	./.	./.	./.
chr4	1388508	rs55703801	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,6:30:159:0.038:2	./.	./.	./.	0/1:41,13:31:54:0.241:2
chr4	1388524	rs55944930	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,6:30:178:0.034:2	./.	./.	./.	0/1:49,14:31:66:0.222:2
chr4	1388553	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,5:29:62:0.082:2
chr4	1388583	rs9328733	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,13:31:13:1.00:2	0/1:65,50:30:116:0.435:2	0/1:76,59:29:136:0.437:2	0/1:0,133:29:133:1.00:2	0/1:76,56:29:132:0.424:2	./.	0/1:0,123:29:123:1.00:2	0/1:49,30:31:79:0.380:2	0/1:0,42:28:42:1.00:2
chr4	1388631	rs200849975	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,20:31:65:0.308:2	0/1:27,6:28:33:0.182:2	./.	./.	0/1:25,6:29:31:0.194:2	0/1:0,10:33:10:1.00:2
chr4	1388635	rs74518227	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,17:26:60:0.283:2	0/1:23,4:27:27:0.148:2	./.	./.	0/1:23,6:26:29:0.207:2	0/1:1,8:27:9:0.889:2
chr4	1388656	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,4:27:30:0.133:2	./.	./.	0/1:28,3:32:31:0.097:2	./.	./.
chr4	1388662	rs9762106	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,4:30:24:0.167:2	./.	./.	0/1:15,3:31:18:0.167:2	./.	./.
chr4	1388666	rs9760377	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,4:24:22:0.182:2	./.	./.	0/1:12,3:32:15:0.200:2	./.	./.
chr4	1388693	rs78906219	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,8:30:14:0.571:2	./.	./.	./.	./.	./.
chr4	1388724	rs76728908	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,3:30:8:0.375:2	./.	./.	./.	./.	./.
chr4	1388817	rs200606324	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.
chr4	1388818	rs142640592	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.
chr4	1389101	rs71614971	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:32:10:0.300:2	./.	./.	./.	./.	0/1:0,6:32:6:1.00:2
chr4	1389156	rs71614972	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,3:29:22:0.136:2	./.	0/1:0,9:27:9:1.00:2	0/1:0,2:30:2:1.00:2	./.	0/1:8,3:31:11:0.273:2	./.	0/1:0,3:26:3:1.00:2
chr4	1389161	rs71614973	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:33:3:1.00:2	./.	./.	./.	0/1:0,4:30:4:1.00:2
chr4	1389448	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:104,6:26:110:0.055:2	./.	./.	0/1:151,4:32:155:0.026:2	./.	0/1:142,11:28:153:0.072:2	./.	./.	./.	./.	./.
chr4	1656801	rs62287700	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,26:26:26:1.00:2	0/1:0,7:26:7:1.00:2	./.	0/1:16,12:27:28:0.429:2	0/1:11,13:25:24:0.542:2	0/1:19,8:27:27:0.296:2	0/1:27,5:27:32:0.156:2	./.	0/1:7,16:27:23:0.696:2	0/1:0,11:27:11:1.00:2	0/1:23,15:26:38:0.395:2
chr4	1657281	rs79735962	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:31:26:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,7:31:7:1.00:2	0/1:20,19:32:39:0.487:2	0/1:21,23:32:44:0.523:2	0/1:21,22:32:43:0.512:2	0/1:14,16:31:30:0.533:2	./.	0/1:7,18:33:25:0.720:2	0/1:0,36:33:36:1.00:2	0/1:10,12:33:22:0.545:2
chr4	1659128	rs56214302	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:31:19:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,7:32:7:1.00:2	0/1:22,20:29:42:0.476:2	0/1:17,16:31:33:0.485:2	0/1:17,18:30:35:0.514:2	0/1:11,13:31:24:0.542:2	0/1:20,24:30:44:0.545:2	0/1:0,38:31:38:1.00:2	0/1:0,33:31:33:1.00:2	0/1:22,15:29:37:0.405:2
chr4	1701317	rs2247341	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:92,81:32:173:0.468:2	0/1:41,44:31:85:0.518:2	0/1:14,10:31:24:0.417:2	./.	0/1:83,86:31:169:0.509:2	0/1:119,75:31:194:0.387:2	0/1:3,128:32:131:0.977:2	0/1:125,75:32:200:0.375:2	0/1:117,79:33:196:0.403:2	./.	0/1:99,85:32:184:0.462:2
chr4	1705399	rs41286667	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,41:34:73:0.562:2
chr4	1719294	rs2236786	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,28:30:55:0.509:2	0/1:16,13:30:29:0.448:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	1720312	rs798752	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:31:13:0.462:2	./.	./.	./.	./.	./.	./.	./.
chr4	1729556	rs34205238	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:31:7:0.714:2	./.	0/1:35,28:30:63:0.444:2	./.	./.	./.	0/1:24,43:31:68:0.642:2	0/1:26,22:31:48:0.458:2	0/1:38,26:28:64:0.406:2
chr4	1729660	rs1063742	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,43:31:81:0.531:2	./.	./.	./.	0/1:63,58:30:121:0.479:2	./.	0/1:28,37:30:65:0.569:2	./.
chr4	1729795	rs200539908	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,6:33:28:0.214:2	./.	./.	./.	./.	./.	./.	./.
chr4	1729953	rs17132047	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,31:29:46:0.674:2	./.	./.	./.	0/1:18,14:29:32:0.438:2	./.	0/1:4,13:29:17:0.765:2	./.
chr4	1729988	rs1063743	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,23:31:37:0.622:2	./.	./.	./.	0/1:17,14:29:31:0.452:2	./.	0/1:8,8:31:16:0.500:2	./.
chr4	1730215	rs798757	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,6:32:16:0.375:2	0/1:28,42:32:70:0.600:2	0/1:51,36:32:87:0.414:2	./.	./.	./.	0/1:52,33:33:85:0.388:2	0/1:27,26:32:53:0.491:2	0/1:40,37:32:77:0.481:2
chr4	1730254	rs798758	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,43:32:76:0.566:2	./.	./.	./.	./.	./.	./.	./.
chr4	1730299	rs798759	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:29:10:0.500:2	0/1:0,47:28:47:1.00:2	0/1:37,11:30:48:0.229:2	./.	./.	0/1:34,14:28:48:0.292:2	0/1:40,18:30:58:0.310:2	0/1:1,28:28:29:0.966:2	0/1:21,22:28:43:0.512:2
chr4	1732695	rs4577642	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,12:31:16:0.750:2	0/1:46,43:30:89:0.483:2	0/1:84,80:29:164:0.488:2	./.	./.	./.	0/1:42,27:29:69:0.391:2	0/1:44,34:30:78:0.436:2	0/1:30,24:29:54:0.444:2
chr4	1732978	rs17680881	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,33:32:81:0.407:2	./.	./.	./.	0/1:72,55:32:127:0.433:2	./.	0/1:37,37:32:74:0.500:2	./.
chr4	1737062	rs3752746	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,42:30:90:0.467:2	./.	./.	./.	0/1:63,46:29:109:0.422:2	./.	0/1:36,26:29:62:0.419:2	./.
chr4	1737071	rs17681032	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,31:32:74:0.419:2	0/1:60,48:32:108:0.444:2	./.	./.	./.	0/1:29,44:34:73:0.603:2	0/1:27,28:32:55:0.509:2	0/1:40,30:31:70:0.429:2
chr4	1737502	rs11248073	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:20,19:31:39:0.487:2	0/1:11,9:33:20:0.450:2	0/1:1,3:32:4:0.750:2	./.	0/1:35,35:30:70:0.500:2	0/1:33,36:32:69:0.522:2	0/1:2,104:31:106:0.981:2	0/1:47,38:32:85:0.447:2	0/1:39,29:32:68:0.426:2	./.	0/1:37,18:32:55:0.327:2
chr4	1741663	rs111894970	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:31:11:0.364:2	./.	0/1:105,90:29:195:0.462:2	./.	./.	./.	0/1:49,46:30:95:0.484:2	0/1:33,43:29:76:0.566:2	0/1:22,30:30:52:0.577:2
chr4	1741740	rs2249143	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,144:32:145:0.993:2	0/1:40,59:32:99:0.596:2	./.	./.	0/1:66,62:32:128:0.484:2	0/1:45,29:32:74:0.392:2	0/1:0,70:32:70:1.00:2	0/1:31,32:32:63:0.508:2
chr4	1801219	rs2305179	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,6:30:16:0.375:2	./.	./.	./.	./.	./.
chr4	1801511	rs3135867	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,10:29:18:0.556:2	./.	./.	./.	./.	0/1:86,74:31:160:0.463:2	0/1:56,58:31:114:0.509:2	./.	./.
chr4	1801542	rs3135868	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,45:33:114:0.395:2	./.	./.	./.	./.	./.
chr4	1803162	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,8:27:10:0.800:2	./.	./.	./.	./.	./.
chr4	1803236	rs2305180	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,7:31:14:0.500:2	./.	./.	./.	./.	./.
chr4	1803251	rs2305181	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,6:27:13:0.462:2	./.	./.	./.	./.	./.
chr4	1803377	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:30:47:0.085:2	./.	./.
chr4	1803704	rs2234909	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,29:29:51:0.569:2	0/1:17,16:30:33:0.485:2	./.	./.	./.	0/1:68,39:30:107:0.364:2	./.	./.	./.	./.	./.
chr4	1807894	rs7688609	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:29:44:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,54:29:54:1.00:2	0/1:0,82:29:82:1.00:2	0/1:0,68:30:68:1.00:2	0/1:0,81:30:81:1.00:2	0/1:0,75:30:75:1.00:2	./.	0/1:0,47:30:47:1.00:2	0/1:0,51:30:51:1.00:2
chr4	1817468	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,4:31:40:0.100:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	1818594	rs9328763	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:32:92:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,88:31:88:1.00:2	0/1:0,87:30:87:1.00:2	0/1:0,93:31:93:1.00:2	0/1:1,76:31:77:0.987:2	0/1:2,87:31:89:0.978:2	0/1:0,116:32:116:1.00:2	0/1:0,116:32:116:1.00:2	0/1:0,137:32:137:1.00:2
chr4	1843089	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:139,4:33:143:0.028:2	./.	./.	./.	./.	./.	./.
chr4	1954945	rs489550	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,91:29:91:1.00:2	0/1:0,15:28:15:1.00:2	0/1:0,149:28:149:1.00:2	0/1:0,107:28:107:1.00:2	0/1:0,146:28:146:1.00:2	0/1:0,111:29:111:1.00:2	0/1:0,139:28:139:1.00:2	0/1:0,165:28:165:1.00:2	0/1:0,139:28:139:1.00:2	0/1:0,169:28:169:1.00:2
chr4	1986542	rs2234570	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,29:27:31:1.00:2	0/1:18,18:27:36:0.500:2	./.	./.	./.	./.	0/1:7,14:27:22:0.667:2	0/1:0,25:26:30:1.00:2
chr4	1988193	rs1077020	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:15,11:33:26:0.423:2	0/1:10,9:31:19:0.474:2	./.	./.	./.	./.	0/1:23,26:33:50:0.531:2	./.	0/1:12,20:33:32:0.625:2	0/1:14,12:31:26:0.462:2	./.
chr4	1993374	rs185364631	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,36:31:71:0.507:2	./.	./.	./.	./.	./.	./.
chr4	2045645	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,3:33:61:0.049:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	2132943	rs1126406	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,6:32:17:0.353:2	./.
chr4	2172456	rs34574483	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,81:29:159:0.509:2	./.	./.	./.	./.	./.	./.	./.
chr4	2175733	rs2022302	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,13:31:20:0.650:2	./.	./.	0/1:79,80:29:159:0.503:2	./.	./.	./.	./.	./.
chr4	2176454	rs9328764	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:29:15:0.400:2	./.	./.	0/1:85,46:32:131:0.351:2	./.	./.	./.	./.	./.
chr4	2178018	rs61748688	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,23:32:69:0.333:2	./.	./.	./.	./.	./.	./.	./.
chr4	2181080	rs6830513	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,18:31:50:0.360:2	./.	./.	./.	./.	./.
chr4	2194946	rs10011549	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,4:32:12:0.333:2	./.	./.	0/1:67,45:32:112:0.402:2	./.	./.	./.	./.	./.
chr4	2194953	rs10002583	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,4:30:12:0.333:2	./.	./.	0/1:74,49:30:123:0.398:2	./.	./.	./.	./.	./.
chr4	2195009	rs11725880	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,42:32:90:0.467:2	0/1:20,37:32:58:0.649:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	2195024	rs10018786	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:33:12:0.500:2	./.	./.	0/1:68,38:32:106:0.358:2	./.	./.	./.	./.	./.
chr4	2210065	rs2353552	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,26:32:54:0.481:2	./.	./.	./.	./.	./.	./.	./.
chr4	2233709	rs11937432	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,55:32:138:0.399:2	./.	./.	./.	./.	./.
chr4	2254185	rs200380885	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,5:29:43:0.116:2	./.	./.	./.	./.	0/1:86,5:27:91:0.055:2	./.	./.	./.	./.	./.
chr4	2275835	rs2051561	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,28:29:63:0.444:2	0/1:17,21:31:38:0.553:2	0/1:10,7:29:17:0.412:2	0/1:65,68:31:134:0.511:2	0/1:78,89:30:167:0.533:2	./.	0/1:83,68:30:151:0.450:2	0/1:2,156:30:159:0.987:2	0/1:0,117:31:117:1.00:2	./.	0/1:47,40:31:88:0.460:2
chr4	2306053	rs661301	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:32:18:1.00:2	0/1:0,9:32:9:1.00:2	0/1:2,3:33:5:0.600:2	0/1:0,14:32:14:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,18:32:18:1.00:2	./.	0/1:0,20:33:20:1.00:2	0/1:21,9:32:30:0.300:2	0/1:0,16:32:16:1.00:2	./.
chr4	2306259	rs17768776	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,13:31:35:0.371:2	0/1:20,15:32:35:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	2307121	rs61742112	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,89:31:90:0.989:2	./.	./.	./.	./.	0/1:28,31:32:59:0.525:2	./.	./.
chr4	2341194	rs2071680	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:69,42:29:111:0.378:2	0/1:28,30:30:58:0.517:2	0/1:3,9:30:12:0.750:2	./.	0/1:105,84:30:189:0.444:2	0/1:0,131:30:131:1.00:2	0/1:121,66:31:187:0.353:2	./.	0/1:69,60:31:130:0.465:2	0/1:64,59:30:123:0.480:2	0/1:64,58:30:122:0.475:2
chr4	2420060	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2
chr4	2632806	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:34:115:0.035:2	./.	./.
chr4	2661757	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:32:54:0.074:2
chr4	2696701	rs149980051	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:34:141:0.028:2	./.	./.	./.
chr4	2743999	rs232712	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,114:29:115:0.991:2	0/1:2,76:29:78:0.974:2	0/1:0,26:30:26:1.00:2	0/1:0,155:29:155:1.00:2	0/1:0,194:28:194:1.00:2	0/1:0,180:29:180:1.00:2	0/1:2,152:29:154:0.987:2	0/1:1,185:29:186:0.995:2	0/1:98,72:30:171:0.424:2	0/1:0,123:29:123:1.00:2	0/1:0,87:29:87:1.00:2
chr4	2744087	rs2269495	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:30:77:1.00:2	0/1:2,42:31:44:0.955:2	0/1:7,5:31:12:0.417:2	0/1:45,28:30:73:0.384:2	0/1:23,33:29:56:0.589:2	0/1:0,70:29:70:1.00:2	0/1:2,69:30:71:0.972:2	0/1:2,63:30:65:0.969:2	./.	0/1:32,18:31:50:0.360:2	0/1:17,18:30:35:0.514:2
chr4	2746564	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,4:29:66:0.061:2	./.	./.	./.	./.	./.	./.
chr4	2747194	rs61734614	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:49,39:31:88:0.443:2	0/1:17,21:30:38:0.553:2	./.	./.	0/1:43,23:31:66:0.348:2	./.	./.	./.	./.	./.	./.
chr4	2749600	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:31:81:0.049:2	./.	./.	./.
chr4	2822467	rs231402	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,3:30:9:0.333:2	0/1:47,40:31:87:0.460:2	0/1:66,56:31:122:0.459:2	./.	0/1:57,46:31:103:0.447:2	0/1:62,67:31:129:0.519:2	0/1:50,36:31:86:0.419:2	0/1:42,40:31:83:0.488:2	0/1:1,73:32:74:0.986:2
chr4	2826400	rs3213501	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:32:7:1.00:2	0/1:35,33:33:68:0.485:2	0/1:44,40:32:84:0.476:2	0/1:37,35:32:72:0.486:2	0/1:44,49:32:93:0.527:2	0/1:37,42:32:79:0.532:2	0/1:0,55:34:55:1.00:2	0/1:1,60:32:61:0.984:2	0/1:0,36:33:36:1.00:2
chr4	2828992	rs35313240	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,53:28:121:0.438:2	./.	./.	./.	./.
chr4	2831383	rs231399	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,11:28:24:0.458:2	0/1:13,7:31:20:0.350:2	./.	0/1:7,7:30:14:0.500:2	0/1:12,12:29:24:0.500:2	0/1:18,12:30:30:0.400:2	0/1:5,11:30:16:0.688:2	0/1:0,8:29:8:1.00:2
chr4	2886336	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:182,4:32:186:0.022:2	./.	./.	./.	./.	./.	./.
chr4	2906707	rs4961	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,14:31:20:0.700:2	./.	./.	./.	./.	0/1:73,92:31:165:0.558:2	0/1:87,67:32:154:0.435:2	0/1:72,40:30:112:0.357:2	./.
chr4	2916762	rs4963	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:31:8:0.500:2	./.	./.	./.	./.	0/1:76,70:32:146:0.479:2	0/1:55,60:34:115:0.522:2	0/1:42,25:32:67:0.373:2	./.
chr4	2928413	rs4964	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:26:59:1.00:2	0/1:1,38:28:39:0.974:2	0/1:8,11:28:19:0.579:2	0/1:1,107:29:108:0.991:2	0/1:2,103:28:105:0.981:2	0/1:0,95:29:95:1.00:2	0/1:0,106:28:106:1.00:2	0/1:58,69:27:127:0.543:2	0/1:42,51:29:93:0.548:2	0/1:50,38:28:88:0.432:2	0/1:0,94:27:94:1.00:2
chr4	2932948	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:34:56:0.071:2	./.
chr4	2935618	rs17851257	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,6:30:6:1.00:2
chr4	2941320	rs146093320	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,38:31:71:0.535:2	0/1:19,31:31:50:0.620:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	2943361	rs1054090	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,39:31:73:0.534:2	0/1:22,23:30:45:0.511:2	0/1:11,5:31:16:0.313:2	0/1:77,62:30:139:0.446:2	0/1:89,62:30:151:0.411:2	0/1:2,116:30:118:0.983:2	./.	./.	./.	./.	0/1:50,28:29:78:0.359:2
chr4	2943383	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:32:148:0.027:2	./.	./.	./.	./.	./.
chr4	2943388	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:31:152:0.026:2	./.	./.	./.	./.	./.
chr4	2951804	rs2515960	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:106,73:28:179:0.408:2	0/1:58,61:29:119:0.513:2	0/1:20,19:29:39:0.487:2	0/1:107,86:31:193:0.446:2	0/1:8,180:29:188:0.957:2	0/1:0,193:29:193:1.00:2	./.	./.	./.	./.	./.
chr4	2990499	rs2960306	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,11:33:30:0.367:2	0/1:10,8:33:18:0.444:2	./.	0/1:26,21:31:47:0.447:2	0/1:18,17:32:35:0.486:2	0/1:0,65:32:65:1.00:2	./.	./.	./.	./.	./.
chr4	2993980	rs2515941	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:54,38:33:92:0.413:2	0/1:20,16:33:36:0.444:2	./.	0/1:42,44:32:86:0.512:2	0/1:39,28:32:67:0.418:2	0/1:0,81:32:81:1.00:2	./.	./.	./.	./.	./.
chr4	3006043	rs1024323	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,32:31:67:0.478:2	0/1:21,14:31:35:0.400:2	./.	0/1:47,28:30:75:0.373:2	0/1:33,17:30:50:0.340:2	0/1:1,55:30:56:0.982:2	./.	./.	./.	./.	./.
chr4	3015553	rs1140085	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,17:33:42:0.405:2	0/1:11,11:32:22:0.500:2	./.	./.	./.	0/1:30,19:31:50:0.388:2	./.	./.	./.	./.	./.
chr4	3039150	rs1801058	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:97,74:30:171:0.433:2	0/1:60,44:30:104:0.423:2	0/1:16,7:32:23:0.304:2	0/1:118,72:30:190:0.379:2	0/1:104,83:31:187:0.444:2	./.	0/1:3,175:30:178:0.983:2	0/1:126,62:31:188:0.330:2	0/1:112,82:31:194:0.423:2	0/1:79,92:30:171:0.538:2	0/1:0,182:29:182:1.00:2
chr4	3124683	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,3:34:26:0.115:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	3137648	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:35:141:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	3137674	rs363075	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,81:32:168:0.482:2	./.	./.	./.	./.	0/1:91,88:33:179:0.492:2	0/1:61,60:32:121:0.496:2	./.
chr4	3148570	rs35892913	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,73:32:139:0.525:2	./.	./.	./.	./.	0/1:77,74:32:151:0.490:2	0/1:55,52:32:107:0.486:2	./.
chr4	3162056	rs363099	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:4,178:32:182:0.978:2	0/1:1,105:32:106:0.991:2	0/1:8,18:31:26:0.692:2	./.	./.	0/1:1,182:31:183:0.995:2	./.	0/1:100,89:31:189:0.471:2	./.	0/1:115,73:31:188:0.388:2	./.
chr4	3213832	rs362336	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,40:31:40:1.00:2	0/1:0,16:30:16:1.00:2	0/1:1,5:31:6:0.833:2	./.	./.	0/1:12,23:31:35:0.657:2	./.	0/1:26,28:31:54:0.519:2	0/1:28,15:30:43:0.349:2	0/1:18,5:28:23:0.217:2	./.
chr4	3215835	rs362331	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,62:32:62:1.00:2	0/1:2,38:32:40:0.950:2	0/1:2,10:33:12:0.833:2	./.	./.	0/1:50,43:31:93:0.462:2	./.	0/1:65,54:32:119:0.454:2	0/1:51,27:33:78:0.346:2	0/1:35,33:32:68:0.485:2	./.
chr4	3219613	rs2857790	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:31:34:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,79:30:79:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,83:31:83:1.00:2	0/1:0,87:30:87:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,58:31:58:1.00:2
chr4	3227419	rs362273	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,78:33:78:1.00:2	0/1:1,51:33:52:0.981:2	0/1:5,5:32:10:0.500:2	./.	./.	0/1:93,57:32:150:0.380:2	./.	0/1:111,82:32:193:0.425:2	0/1:67,97:33:164:0.591:2	0/1:67,51:32:119:0.432:2	./.
chr4	3230343	rs200196119	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,5:22:49:0.102:2
chr4	3231661	rs2276881	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,80:30:156:0.513:2	./.	./.	./.
chr4	3234980	rs362272	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,56:30:56:1.00:2	0/1:1,47:31:48:0.979:2	./.	./.	./.	0/1:43,66:31:109:0.606:2	./.	0/1:62,48:32:110:0.436:2	./.	0/1:41,29:32:70:0.414:2	./.
chr4	3235027	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:146,4:33:150:0.027:2	./.	./.	./.	./.	./.	./.
chr4	3257593	rs362287	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:31:6:1.00:2	0/1:0,3:32:3:1.00:2	./.	./.	./.	0/1:1,6:30:7:0.857:2	./.	./.	0/1:3,2:34:5:0.400:2	./.	./.
chr4	3318413	rs2236052	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:28:10:1.00:2	0/1:25,14:29:39:0.359:2	0/1:18,12:29:30:0.400:2	./.	0/1:0,13:29:13:1.00:2	0/1:13,13:29:26:0.500:2	0/1:12,21:30:33:0.636:2	./.	0/1:1,34:28:35:0.971:2
chr4	3319271	rs10006362	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	0/1:7,15:30:22:0.682:2	./.	./.	./.	./.	./.	0/1:2,8:31:10:0.800:2
chr4	3319505	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:31:12:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	3319553	rs2281470	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,35:31:91:0.385:2	./.	./.	./.
chr4	3319712	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:32:118:0.034:2	./.	./.	./.
chr4	3372021	rs116426883	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,53:31:130:0.411:2	./.	./.	./.
chr4	3417845	rs3213507	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,31:32:66:0.470:2	0/1:21,8:32:29:0.276:2	./.	0/1:56,44:33:100:0.440:2	0/1:67,47:32:114:0.412:2	0/1:59,53:32:112:0.473:2	./.	0/1:52,50:33:102:0.490:2	./.	0/1:43,31:32:74:0.419:2	./.
chr4	3424231	rs16844330	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,4:32:17:0.235:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	3429856	rs2269497	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:33:11:0.727:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	3443769	rs150750289	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	./.	./.	./.	./.
chr4	3444503	rs2073505	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:30:10:0.500:2	./.	./.	./.	./.	./.	./.	0/1:61,47:31:108:0.435:2	./.
chr4	3444593	rs2073504	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,17:22:32:0.531:2	./.	0/1:28,13:27:41:0.317:2	./.	./.
chr4	3446132	rs1987546	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,15:31:15:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,10:33:10:1.00:2	0/1:9,5:34:14:0.357:2	0/1:0,23:32:23:1.00:2	0/1:5,6:32:11:0.545:2	0/1:15,5:30:20:0.250:2	0/1:8,14:33:22:0.636:2	0/1:0,15:33:15:1.00:2	0/1:1,4:31:5:0.800:2
chr4	3449652	rs16844401	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:30:10:0.400:2	./.	./.	./.	./.	./.	./.	0/1:46,44:31:90:0.489:2	./.
chr4	3449886	rs28468427	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:30:6:0.667:2	./.	0/1:28,30:31:58:0.517:2	./.	0/1:15,11:31:26:0.423:2	./.	0/1:15,30:33:45:0.667:2	./.	./.
chr4	3449915	rs114303452	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,15:32:28:0.536:2	./.	./.	./.	./.
chr4	3451109	rs2498323	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,59:32:147:0.401:2	./.	./.	0/1:86,65:33:151:0.430:2	0/1:46,54:32:100:0.540:2
chr4	3475166	rs62272670	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,12:30:42:0.293:2
chr4	3475252	rs4325970	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:32:73:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,103:32:103:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,91:33:91:1.00:2	0/1:0,63:32:64:1.00:2	0/1:0,50:31:50:1.00:2
chr4	3491504	rs59932476	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:33:9:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	3494600	rs6811423	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,31:31:31:1.00:2	./.	./.	./.
chr4	3494826	rs6811856	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,9:32:9:1.00:2	./.	./.	./.
chr4	3494847	rs6831659	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,10:30:10:1.00:2	./.	./.	./.
chr4	3494898	rs6850908	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,32:29:33:0.970:2	./.	./.	./.
chr4	3514689	rs1800495	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	3514695	rs6789	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:21,22:33:43:0.512:2	0/1:10,14:32:24:0.583:2	0/1:0,2:33:2:1.00:2	./.	./.	./.	0/1:3,69:32:72:0.958:2	./.	0/1:44,21:33:65:0.323:2	./.	0/1:0,49:33:49:1.00:2
chr4	3516560	rs11549512	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:23,36:31:59:0.610:2	0/1:12,33:31:45:0.733:2	./.	./.	./.	./.	0/1:74,69:29:143:0.483:2	./.	./.	./.	./.
chr4	3519762	rs13325	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,14:29:28:0.500:2	./.	./.	./.	0/1:10,9:26:19:0.474:2	./.
chr4	3526645	rs11549516	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,8:28:23:0.348:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	3533975	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:33:45:0.089:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	3769062	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,4:30:13:0.308:2	./.
chr4	3769500	rs111546772	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,37:30:60:0.617:2	./.
chr4	3769798	rs149519379	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,7:31:14:0.500:2	./.	./.	./.	./.	./.	0/1:10,3:31:13:0.231:2
chr4	3770069	rs76337672	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,10:32:13:0.769:2	./.	0/1:30,21:31:51:0.412:2	./.	./.	./.	./.	0/1:23,40:31:63:0.635:2	0/1:27,42:32:69:0.609:2
chr4	4190576	rs199742451	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:134,23:33:157:0.146:2	0/1:122,25:32:147:0.170:2	0/1:37,6:31:43:0.140:2	0/1:122,24:32:146:0.164:2	0/1:141,23:31:166:0.140:2	0/1:104,27:29:131:0.206:2	0/1:138,15:31:153:0.098:2	0/1:125,30:31:155:0.194:2	0/1:114,25:33:139:0.180:2	0/1:113,20:32:133:0.150:2	0/1:130,25:33:156:0.161:2
chr4	4190577	rs200368405	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:134,23:32:157:0.146:2	0/1:121,26:32:147:0.177:2	0/1:36,6:32:42:0.143:2	0/1:120,24:32:144:0.167:2	0/1:137,27:31:164:0.165:2	0/1:106,27:31:133:0.203:2	0/1:136,16:31:152:0.105:2	0/1:124,32:31:156:0.205:2	0/1:115,26:32:142:0.184:2	0/1:113,21:32:134:0.157:2	0/1:130,25:32:155:0.161:2
chr4	4190595	rs79218997	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:128,51:32:179:0.285:2	0/1:123,50:32:173:0.289:2	0/1:34,15:32:49:0.306:2	0/1:128,45:31:173:0.260:2	0/1:138,48:32:186:0.258:2	0/1:124,49:31:173:0.283:2	0/1:146,34:33:180:0.189:2	0/1:111,64:32:175:0.366:2	0/1:128,49:33:177:0.277:2	0/1:121,44:33:166:0.267:2	0/1:116,59:33:175:0.337:2
chr4	4190683	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:115,29:32:144:0.201:2	0/1:103,29:32:132:0.220:2	0/1:22,12:31:34:0.353:2	0/1:107,35:32:142:0.246:2	0/1:110,24:31:134:0.179:2	0/1:100,34:32:134:0.254:2	0/1:111,36:32:147:0.245:2	0/1:116,50:32:166:0.301:2	0/1:113,33:33:146:0.226:2	0/1:105,27:32:132:0.205:2	0/1:109,44:32:153:0.288:2
chr4	4199083	rs34666677	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,85:29:148:0.574:2	./.	./.	0/1:99,81:30:180:0.450:2	./.	./.	./.	./.
chr4	4199261	rs11736799	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,11:31:58:0.190:2	./.	./.	./.	./.	./.	./.	./.
chr4	4199634	rs2916414	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,53:32:105:0.505:2	0/1:24,31:32:55:0.564:2	0/1:0,17:32:17:1.00:2	0/1:1,141:32:143:0.993:2	0/1:113,81:32:194:0.418:2	0/1:86,79:32:167:0.479:2	0/1:95,96:32:191:0.503:2	0/1:93,99:32:192:0.516:2	0/1:81,86:33:167:0.515:2	0/1:3,135:32:138:0.978:2	0/1:1,114:32:115:0.991:2
chr4	4199697	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:31:96:0.042:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,10:32:193:0.052:2
chr4	4199711	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,9:32:181:0.050:2
chr4	4199760	rs17697262	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:32:14:0.500:2	./.	./.	0/1:88,75:30:163:0.460:2	./.	./.	./.	./.	./.
chr4	4204211	rs200612216	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:33:96:0.042:2	./.
chr4	4204299	rs2920182	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,21:33:47:0.457:2	0/1:11,16:32:27:0.593:2	0/1:0,8:31:8:1.00:2	0/1:0,67:32:67:1.00:2	0/1:49,32:32:81:0.395:2	0/1:29,30:31:59:0.508:2	0/1:49,37:33:86:0.430:2	0/1:39,32:31:71:0.451:2	0/1:30,16:34:46:0.348:2	0/1:0,50:32:50:1.00:2	0/1:0,31:32:31:1.00:2
chr4	4214625	rs113262032	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:152,4:34:156:0.026:2	./.	./.	./.	./.	./.	./.
chr4	4214678	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:166,9:32:175:0.051:2	0/1:138,4:32:142:0.028:2	./.	./.	0/1:152,7:30:159:0.044:2	./.	./.	./.	./.	./.	./.
chr4	4214702	rs199937755	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:168,10:32:178:0.056:2	0/1:133,4:31:137:0.029:2	./.	./.	0/1:169,5:32:174:0.029:2	0/1:191,5:31:196:0.026:2	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.
chr4	4228226	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.
chr4	4228424	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,4:29:16:0.250:2	0/1:6,5:31:11:0.455:2	0/1:4,3:27:7:0.429:2	0/1:9,6:29:15:0.400:2	0/1:8,3:32:11:0.273:2	./.	./.
chr4	4228425	rs78657691	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,4:31:16:0.250:2	0/1:8,3:31:11:0.273:2	0/1:4,3:32:7:0.429:2	0/1:9,6:32:15:0.400:2	0/1:8,3:32:11:0.273:2	./.	./.
chr4	4228456	rs73191872	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,4:30:10:0.400:2	./.	./.	./.
chr4	4239587	rs62286915	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:157,29:30:188:0.156:2	0/1:110,24:30:134:0.179:2	./.	0/1:154,14:29:168:0.083:2	0/1:154,19:27:173:0.110:2	0/1:173,19:27:192:0.099:2	0/1:174,23:29:197:0.117:2	0/1:177,15:29:193:0.078:2	0/1:167,30:30:197:0.152:2	0/1:160,26:28:186:0.140:2	0/1:159,22:29:181:0.122:2
chr4	4239589	rs202215273	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:182,6:30:188:0.032:2	./.	./.	./.	0/1:170,7:28:177:0.040:2	./.	./.	./.	0/1:190,5:30:195:0.026:2	./.	./.
chr4	4249297	rs2916469	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:62,48:32:110:0.436:2	0/1:28,40:31:68:0.588:2	./.	0/1:82,57:31:139:0.410:2	./.	0/1:0,102:30:102:1.00:2	0/1:102,34:31:136:0.250:2	0/1:71,41:30:112:0.366:2	./.	0/1:66,38:31:104:0.365:2	./.
chr4	4249300	rs2916468	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:60,49:33:109:0.450:2	0/1:29,40:32:69:0.580:2	./.	0/1:87,55:32:142:0.387:2	./.	0/1:0,102:32:102:1.00:2	0/1:99,34:32:133:0.256:2	0/1:72,41:31:113:0.363:2	./.	0/1:70,38:33:109:0.352:2	./.
chr4	4249884	rs6854167	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	0/1:2,3:33:5:0.600:2
chr4	4249909	rs2272746	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,3:30:3:1.00:2	0/1:0,3:30:3:1.00:2	./.	0/1:4,6:30:10:0.600:2	./.	0/1:5,6:30:11:0.545:2	./.	0/1:8,6:29:14:0.429:2	./.	0/1:3,5:30:8:0.625:2	./.
chr4	4276132	rs7376390	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,78:31:78:1.00:2	0/1:0,40:30:40:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,114:31:114:1.00:2	0/1:0,125:31:125:1.00:2	0/1:0,115:31:115:1.00:2	0/1:0,115:30:115:1.00:2	0/1:0,148:31:148:1.00:2	0/1:0,118:32:118:1.00:2	0/1:0,97:31:97:1.00:2	0/1:0,90:31:90:1.00:2
chr4	4276198	rs41264703	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:89,53:30:142:0.373:2	0/1:39,37:30:76:0.487:2	./.	./.	0/1:84,76:30:160:0.475:2	./.	./.	./.	./.	./.	./.
chr4	4276475	rs2272739	C	T,A	.	PASS	AC=1,1;AF=0.167,0.167;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	./.	0/2:30:23:0.304:2	./.	./.	0/1:31:162:0.407:2	./.	./.	./.	./.	./.
chr4	4304337	rs2916382	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,45:33:45:1.00:2	0/1:0,26:32:26:1.00:2	./.	0/1:0,48:32:48:1.00:2	0/1:0,46:31:46:1.00:2	0/1:1,61:32:62:0.984:2	0/1:30,28:32:60:0.483:2	0/1:0,52:33:52:1.00:2	0/1:0,72:33:72:1.00:2	0/1:25,11:32:36:0.306:2	0/1:30,21:32:51:0.412:2
chr4	4304522	rs2920217	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:56,36:33:92:0.391:2	0/1:34,19:32:53:0.358:2	./.	0/1:1,46:32:47:0.979:2	./.	./.	./.	./.	./.	0/1:53,41:33:94:0.436:2	0/1:79,65:32:144:0.451:2
chr4	4317443	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:32:108:0.037:2	./.	./.	./.	./.	./.
chr4	4389432	rs142822048	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,72:31:118:0.610:2	0/1:43,32:31:75:0.427:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	4421770	rs368451147	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,16:32:34:0.471:2	./.	./.	./.	./.	./.	./.
chr4	4425329	rs62289797	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,24:32:55:0.436:2	0/1:45,25:32:70:0.357:2
chr4	4436517	rs33952588	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,5:28:15:0.333:2	./.	./.	0/1:4,8:30:12:0.667:2	./.	./.
chr4	4440183	rs61740788	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,26:30:59:0.441:2	./.	./.	0/1:35,34:32:69:0.493:2	./.	./.
chr4	4459154	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:31:78:0.051:2	./.
chr4	4459177	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:32:99:0.040:2	./.
chr4	4459184	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:31:98:0.041:2	./.
chr4	4864519	rs149960650	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,34:29:69:0.493:2	./.	./.	./.
chr4	5018586	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,50:29:106:0.472:2	./.
chr4	5021021	rs35755546	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,24:31:43:0.558:2
chr4	5021086	rs10006676	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,11:30:25:0.440:2	./.	./.	./.	./.	./.
chr4	5021149	rs35263598	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	5448429	rs3733182	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,36:29:69:0.522:2	./.	0/1:46,33:30:79:0.418:2	./.	./.	./.	./.
chr4	5469810	rs2301855	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,50:32:50:1.00:2	0/1:11,16:31:27:0.593:2	0/1:33,10:32:43:0.233:2	0/1:18,26:33:44:0.591:2	./.	0/1:28,20:32:48:0.417:2	0/1:19,21:33:40:0.525:2	./.
chr4	5527185	rs147966579	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,26:32:59:0.441:2	./.	./.	./.
chr4	5570221	rs12511039	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,16:31:31:0.516:2	0/1:17,14:32:31:0.452:2	./.	./.	./.	0/1:21,13:31:34:0.382:2	./.	0/1:9,35:32:44:0.795:2	./.	./.	0/1:10,9:32:19:0.474:2
chr4	5577986	rs112554914	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,42:32:107:0.393:2	./.	./.
chr4	5620310	rs116514447	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,85:31:161:0.528:2	./.	./.	./.
chr4	5624530	rs60121553	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,61:32:117:0.521:2	./.	./.	./.
chr4	5624670	rs730469	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,31:31:81:0.383:2	./.	./.	0/1:52,27:29:79:0.342:2	./.	./.	./.
chr4	5624704	rs73198153	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,28:33:57:0.491:2	./.	0/1:30,7:33:37:0.189:2	./.	./.	./.
chr4	5627493	rs73198165	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,21:32:67:0.313:2	./.	./.	./.
chr4	5627518	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:34:104:0.038:2	./.	./.
chr4	5642274	rs13131655	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,13:32:31:0.419:2	./.	./.	0/1:3,188:32:191:0.984:2	0/1:108,84:32:192:0.438:2	./.	./.	./.	0/1:100,74:33:174:0.425:2
chr4	5690902	rs4689278	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:12,3:31:15:0.200:2	0/1:8,10:31:18:0.556:2	./.	./.	./.	./.	0/1:10,7:33:17:0.412:2	0/1:11,13:33:24:0.542:2	0/1:11,11:34:22:0.500:2	./.	0/1:22,15:32:37:0.405:2
chr4	5692977	rs17688121	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:52,39:31:91:0.429:2	0/1:12,25:32:37:0.676:2	./.	0/1:38,33:31:71:0.465:2	0/1:45,21:31:66:0.318:2	0/1:50,43:30:93:0.462:2	./.	0/1:32,23:31:55:0.418:2	./.	0/1:0,71:32:72:1.00:2	./.
chr4	5721021	rs2291157	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	0/1:28,38:31:66:0.576:2	./.	./.	0/1:56,34:29:90:0.378:2	./.	./.	./.
chr4	5721049	rs35870680	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,52:29:91:0.571:2	0/1:37,29:28:66:0.439:2	./.	0/1:65,67:30:132:0.508:2	0/1:81,42:29:123:0.341:2	./.	./.	./.	./.	0/1:0,110:30:110:1.00:2	./.
chr4	5733236	rs146729456	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,44:34:106:0.415:2	./.	./.	./.	./.
chr4	5743509	rs6446393	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,72:31:73:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,70:31:70:1.00:2	0/1:0,101:32:101:1.00:2	0/1:51,24:32:75:0.320:2	0/1:0,81:32:81:1.00:2
chr4	5743512	rs6414624	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,12:32:12:1.00:2	0/1:2,73:32:75:0.973:2	0/1:0,43:31:43:1.00:2	0/1:27,46:31:73:0.630:2	0/1:0,38:32:38:1.00:2	0/1:1,69:32:70:0.986:2	0/1:0,102:33:102:1.00:2	0/1:50,24:32:74:0.324:2	0/1:0,80:32:80:1.00:2
chr4	5747018	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:33:45:0.089:2	./.	./.	./.	./.
chr4	5749904	rs4688963	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:30,27:32:57:0.474:2	0/1:30,22:32:52:0.423:2	./.	./.	0/1:37,27:32:64:0.422:2	0/1:42,32:31:74:0.432:2	0/1:30,37:32:67:0.552:2	./.	0/1:36,41:34:77:0.532:2	0/1:32,35:33:68:0.522:2	0/1:57,46:32:103:0.447:2
chr4	5749961	rs4688962	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:32,24:32:56:0.429:2	0/1:23,26:33:49:0.531:2	./.	./.	0/1:36,20:33:56:0.357:2	0/1:40,40:33:80:0.500:2	0/1:39,43:33:83:0.524:2	./.	0/1:46,42:33:88:0.477:2	0/1:37,40:32:77:0.519:2	0/1:41,54:33:95:0.568:2
chr4	5749976	rs148418233	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,42:33:85:0.494:2	./.	./.
chr4	5750003	rs33929747	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,18:31:33:0.545:2	0/1:15,12:31:27:0.444:2	0/1:3,7:33:10:0.700:2	0/1:0,59:31:59:1.00:2	0/1:13,17:32:30:0.567:2	0/1:38,27:32:65:0.415:2	0/1:33,29:32:62:0.468:2	0/1:52,20:32:72:0.278:2	./.	0/1:26,27:32:53:0.509:2	0/1:43,32:32:75:0.427:2
chr4	5754579	rs28483498	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,61:31:125:0.488:2	./.	./.	./.	0/1:81,83:32:164:0.506:2	./.	./.
chr4	5755524	rs35953626	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,37:32:86:0.430:2	./.	./.	./.	./.	./.
chr4	5755542	rs2302075	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:32:86:1.00:2	0/1:0,39:32:39:1.00:2	0/1:2,9:32:11:0.818:2	0/1:0,106:32:106:1.00:2	0/1:0,84:32:85:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,97:32:97:1.00:2	0/1:63,67:32:130:0.515:2	0/1:0,90:33:90:1.00:2	0/1:0,93:32:93:1.00:2	0/1:1,86:32:87:0.989:2
chr4	5785442	rs1383180	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,30:32:54:0.556:2	0/1:28,11:32:39:0.282:2	./.	0/1:43,29:32:72:0.403:2	0/1:42,28:32:70:0.400:2	0/1:45,34:32:79:0.430:2	0/1:38,24:32:62:0.387:2	0/1:58,39:32:97:0.402:2	./.	0/1:24,37:33:61:0.607:2	0/1:30,34:33:64:0.531:2
chr4	5795412	rs11737221	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,12:31:12:1.00:2	0/1:31,53:30:84:0.631:2	./.	./.	0/1:29,41:30:70:0.586:2	./.	0/1:43,46:30:90:0.517:2	./.	./.
chr4	5830296	rs34611001	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,88:31:193:0.456:2	./.	./.	./.
chr4	5830393	rs61746000	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,54:32:107:0.505:2	./.	./.	./.
chr4	5838513	rs12331	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:27,21:29:48:0.438:2	0/1:22,20:30:42:0.476:2	0/1:2,7:31:9:0.778:2	./.	0/1:41,37:29:78:0.474:2	0/1:0,92:29:92:1.00:2	0/1:0,74:28:74:1.00:2	0/1:60,51:29:111:0.459:2	0/1:40,53:29:93:0.570:2	./.	./.
chr4	5841350	rs16837723	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,8:31:21:0.381:2	0/1:0,15:33:15:1.00:2	./.	./.
chr4	5966801	rs6839295	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,17:32:38:0.447:2	./.	./.	0/1:31,26:31:57:0.456:2	0/1:30,39:32:69:0.565:2	0/1:39,27:33:66:0.409:2	0/1:22,18:32:40:0.450:2	./.
chr4	5975538	rs16837960	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,56:32:56:1.00:2	0/1:0,32:32:32:1.00:2	./.	0/1:38,52:32:90:0.578:2	0/1:44,66:31:110:0.600:2	0/1:33,37:32:70:0.529:2	0/1:57,46:32:103:0.447:2	0/1:0,94:32:94:1.00:2	./.	0/1:27,23:33:50:0.460:2	0/1:34,34:32:68:0.500:2
chr4	5990110	rs4689287	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,13:31:31:0.419:2	0/1:17,20:31:37:0.541:2	0/1:21,11:30:32:0.344:2	0/1:21,22:32:43:0.512:2	./.	0/1:12,16:30:28:0.571:2	./.	0/1:21,18:32:39:0.462:2
chr4	6293696	rs1801213	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:49,42:31:91:0.462:2	0/1:22,37:32:59:0.627:2	0/1:0,22:31:22:1.00:2	./.	0/1:1,93:32:94:0.989:2	./.	0/1:32,33:32:65:0.508:2	0/1:57,41:33:98:0.418:2	0/1:0,101:33:101:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,63:31:65:1.00:2
chr4	6302519	rs1801212	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:113,74:32:187:0.396:2	0/1:119,69:31:188:0.367:2	0/1:0,66:31:66:1.00:2	./.	0/1:0,191:31:191:1.00:2	./.	0/1:103,94:31:197:0.477:2	0/1:116,80:31:196:0.408:2	0/1:0,188:32:188:1.00:2	0/1:0,170:32:170:1.00:2	0/1:0,167:31:167:1.00:2
chr4	6302545	rs56072215	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:95,73:32:168:0.435:2	0/1:110,78:32:188:0.415:2	./.	./.	0/1:104,80:32:184:0.435:2	./.	./.	./.	./.	./.	./.
chr4	6302707	rs1801206	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:171,5:30:176:0.028:2	./.	0/1:0,25:29:25:1.00:2	0/1:186,5:28:191:0.026:2	0/1:107,88:29:195:0.451:2	./.	0/1:111,83:29:194:0.428:2	0/1:124,70:29:194:0.361:2	0/1:0,173:30:173:1.00:2	0/1:0,140:29:140:1.00:2	0/1:0,144:29:144:1.00:2
chr4	6302816	rs35031397	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,7:31:16:0.438:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	6302889	rs1801208	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:31:11:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	6303022	rs1801214	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:32:11:1.00:2	./.	0/1:49,68:31:117:0.581:2	./.	0/1:53,52:31:105:0.495:2	0/1:28,40:31:68:0.588:2	0/1:0,78:32:78:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,44:32:44:1.00:2
chr4	6303197	rs55814513	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,43:29:71:0.614:2	./.	./.	./.	./.	./.	./.
chr4	6303247	rs2230719	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:43,34:31:77:0.442:2	0/1:30,19:32:49:0.388:2	./.	./.	0/1:31,39:31:70:0.557:2	./.	./.	./.	./.	./.	./.
chr4	6303354	rs734312	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,16:31:25:0.640:2	./.	0/1:105,88:31:193:0.456:2	./.	0/1:119,76:31:195:0.390:2	0/1:98,95:31:193:0.492:2	0/1:0,133:32:133:1.00:2	0/1:0,125:31:125:1.00:2	0/1:0,123:32:123:1.00:2
chr4	6303810	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:132,11:17:143:0.077:2	./.	./.	./.	./.	./.	./.	./.
chr4	6303844	rs2230721	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:27,48:31:75:0.640:2	0/1:25,25:32:50:0.500:2	./.	./.	0/1:55,57:30:112:0.509:2	./.	./.	./.	./.	./.	./.
chr4	6303955	rs1046314	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	0/1:15,11:30:26:0.423:2	./.	0/1:6,3:32:9:0.333:2	0/1:11,8:30:19:0.421:2	0/1:0,25:32:25:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,6:27:6:1.00:2
chr4	6303974	rs35932623	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,19:32:27:0.704:2	./.	./.
chr4	6304087	rs1046316	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:50,41:28:91:0.451:2	0/1:39,28:28:67:0.418:2	0/1:1,14:28:15:0.933:2	./.	0/1:1,96:27:97:0.990:2	./.	0/1:56,22:27:78:0.282:2	0/1:81,30:28:111:0.270:2	0/1:0,96:28:96:1.00:2	0/1:0,73:28:73:1.00:2	0/1:0,49:28:49:1.00:2
chr4	6325086	rs3796403	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:88,94:31:182:0.516:2	0/1:76,56:32:132:0.424:2	0/1:34,30:30:64:0.469:2	./.	0/1:1,185:31:186:0.995:2	0/1:106,86:31:192:0.448:2	0/1:113,85:31:198:0.429:2	0/1:98,97:31:195:0.497:2	0/1:0,185:32:186:1.00:2	0/1:3,179:32:182:0.984:2	0/1:115,80:31:195:0.410:2
chr4	6330999	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,11:32:19:0.579:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	6594947	rs2301796	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:44,28:33:72:0.389:2	0/1:23,29:32:52:0.558:2	0/1:0,9:32:9:1.00:2	./.	./.	0/1:47,77:33:124:0.621:2	0/1:4,123:32:127:0.969:2	./.	0/1:55,41:33:96:0.427:2	0/1:2,71:32:73:0.973:2	0/1:0,97:33:97:1.00:2
chr4	6596360	rs2301795	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,38:31:80:0.475:2	0/1:25,14:31:39:0.359:2	./.	0/1:0,115:31:115:1.00:2	0/1:1,182:31:183:0.995:2	0/1:60,66:30:126:0.524:2	./.	0/1:0,170:31:170:1.00:2	0/1:62,53:32:115:0.461:2	./.	./.
chr4	6600012	rs2301790	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:68,41:29:109:0.376:2	0/1:37,37:30:74:0.500:2	0/1:1,26:29:27:0.963:2	./.	./.	0/1:1,163:29:165:0.994:2	0/1:89,58:30:147:0.395:2	./.	0/1:73,81:30:154:0.526:2	0/1:1,86:28:87:0.989:2	0/1:0,87:30:87:1.00:2
chr4	6602356	rs149231849	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,42:30:103:0.412:2	./.	./.	./.	./.	./.	./.	./.
chr4	6606864	rs2301788	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:25,23:32:48:0.479:2	0/1:20,11:32:31:0.355:2	0/1:0,5:33:5:1.00:2	./.	./.	0/1:44,21:32:65:0.323:2	0/1:4,81:33:85:0.953:2	0/1:38,43:32:81:0.531:2	0/1:37,30:33:67:0.448:2	0/1:1,52:33:53:0.981:2	0/1:0,65:32:65:1.00:2
chr4	6607019	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,41:31:81:0.506:2	./.	./.	./.	./.	./.
chr4	6610889	rs61733402	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,39:33:93:0.419:2	0/1:37,39:32:76:0.513:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	6612941	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:127,4:32:131:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr4	6616056	rs61729241	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:59,53:31:112:0.473:2	0/1:25,24:31:49:0.490:2	./.	./.	0/1:103,70:31:173:0.405:2	./.	./.	./.	./.	./.	./.
chr4	6619165	rs4689489	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,73:33:73:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,75:33:75:1.00:2	0/1:0,107:32:107:1.00:2	0/1:0,78:33:78:1.00:2	0/1:0,63:33:63:1.00:2	0/1:0,64:32:64:1.00:2
chr4	6619204	rs4689490	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:31:38:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,14:29:14:1.00:2	0/1:1,72:29:73:0.986:2	0/1:0,57:29:57:1.00:2	0/1:0,49:29:49:1.00:2	0/1:2,60:30:62:0.968:2	0/1:4,82:30:86:0.953:2	0/1:0,67:30:67:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,66:30:66:1.00:2
chr4	6698664	rs11737783	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,72:31:180:0.400:2	./.	./.	0/1:86,67:30:153:0.438:2
chr4	6698667	rs11734898	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,105:29:105:1.00:2	0/1:0,84:29:84:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,168:30:168:1.00:2	0/1:0,177:29:177:1.00:2	0/1:0,190:29:190:1.00:2	0/1:0,190:30:190:1.00:2	0/1:0,175:30:175:1.00:2	0/1:0,170:29:170:1.00:2	0/1:0,146:29:146:1.00:2	0/1:0,150:29:150:1.00:2
chr4	6698668	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.	./.	./.
chr4	6698706	rs11733989	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,110:30:110:1.00:2	0/1:0,89:29:89:1.00:2	0/1:0,16:29:16:1.00:2	./.	0/1:0,173:29:175:1.00:2	./.	0/1:0,164:29:164:1.00:2	0/1:0,176:30:176:1.00:2	0/1:0,165:30:165:1.00:2	0/1:0,151:30:151:1.00:2	0/1:1,146:29:147:0.993:2
chr4	6718775	rs3172604	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,13:30:28:0.464:2	0/1:4,5:31:9:0.556:2	0/1:0,2:29:2:1.00:2	0/1:18,8:31:26:0.308:2	0/1:3,18:31:21:0.857:2	0/1:0,27:31:27:1.00:2	0/1:0,12:31:12:1.00:2	0/1:22,9:30:31:0.290:2	./.	0/1:0,21:32:21:1.00:2	0/1:30,25:32:55:0.455:2
chr4	6718811	rs11550047	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,9:29:19:0.474:2	./.	./.	./.
chr4	6864479	rs187473593	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,8:32:21:0.381:2	./.	./.	./.	./.	./.
chr4	6925237	rs34860182	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:24,30:30:54:0.556:2	0/1:9,12:29:21:0.571:2	./.	./.	./.	./.	./.	0/1:31,13:29:44:0.295:2	./.	./.	./.
chr4	6956059	rs11732887	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,187:30:189:0.989:2	./.	0/1:98,96:30:194:0.495:2	./.	./.	./.	0/1:0,139:30:139:1.00:2	0/1:100,80:30:180:0.444:2
chr4	6956086	rs56094305	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,89:31:188:0.473:2	./.	./.	./.
chr4	7044357	rs871133	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.
chr4	7044600	rs2359010	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:6,3:32:9:0.333:2	0/1:4,6:31:10:0.600:2	./.	./.	0/1:3,8:32:11:0.727:2	./.	0/1:1,5:27:6:0.833:2	./.	./.	./.	./.
chr4	7055876	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:120,4:32:124:0.032:2	./.	./.	./.	./.	./.	./.
chr4	7435058	rs60816800	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,10:32:13:0.769:2	0/1:0,97:31:97:1.00:2	./.	0/1:51,37:31:90:0.420:2	./.	0/1:72,45:31:117:0.385:2	./.	./.	./.
chr4	7435194	rs12498567	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,16:30:37:0.432:2	./.	./.	./.	./.	0/1:10,9:29:20:0.474:2
chr4	7435379	rs4689746	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:33:56:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,118:33:118:1.00:2	0/1:0,144:32:144:1.00:2	0/1:0,122:32:122:1.00:2	0/1:0,143:33:143:1.00:2	0/1:0,103:33:103:1.00:2	0/1:0,85:34:85:1.00:2	0/1:1,81:33:82:0.988:2	0/1:0,77:33:77:1.00:2
chr4	7435443	rs6843370	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:30:8:0.750:2	./.	./.	./.	./.	./.	0/1:41,31:32:72:0.431:2	./.	./.
chr4	7435486	rs61738677	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:31:6:0.500:2	0/1:1,59:29:60:0.983:2	./.	./.	./.	0/1:45,43:30:88:0.489:2	./.	./.	./.
chr4	7435721	rs6850206	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,45:31:45:1.00:2	./.	0/1:16,24:30:40:0.600:2	./.	0/1:23,21:29:44:0.477:2	./.	./.	./.
chr4	7435797	rs34136551	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:15,16:32:31:0.516:2	0/1:8,11:32:19:0.579:2	./.	./.	./.	./.	./.	./.	./.	0/1:18,16:31:34:0.471:2	./.
chr4	7435901	rs56269914	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,19:28:54:0.352:2	./.	./.	./.	./.	./.
chr4	7436073	rs61740031	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,80:31:80:1.00:2	./.	0/1:24,33:31:57:0.579:2	./.	0/1:34,31:31:65:0.477:2	./.	./.	./.
chr4	7436239	rs56402179	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,27:31:27:1.00:2	./.	0/1:14,6:28:20:0.300:2	./.	0/1:14,16:30:30:0.533:2	./.	./.	./.
chr4	7436312	rs61733528	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,3:32:43:0.070:2	./.	./.	./.
chr4	7436486	rs11548325	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,59:30:103:0.573:2	./.	0/1:57,78:31:135:0.578:2	0/1:56,54:30:110:0.491:2	0/1:38,40:32:78:0.513:2	0/1:47,32:31:79:0.405:2	0/1:31,43:30:74:0.581:2
chr4	7436701	rs77191210	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,47:30:49:1.00:2	./.	0/1:16,23:29:39:0.590:2	./.	0/1:30,26:31:56:0.464:2	./.	./.	./.
chr4	7655855	rs2285789	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:32:103:1.00:2	0/1:2,63:31:65:0.969:2	0/1:14,7:31:21:0.333:2	0/1:102,66:32:168:0.393:2	0/1:83,43:32:127:0.341:2	0/1:1,147:32:148:0.993:2	./.	0/1:3,150:32:153:0.980:2	0/1:96,69:33:165:0.418:2	0/1:2,117:32:119:0.983:2	0/1:3,145:32:148:0.980:2
chr4	7666160	rs34058821	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,35:32:68:0.515:2	./.	./.	./.	./.	./.
chr4	7668880	rs33978179	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,52:33:96:0.547:2
chr4	7684544	rs35306661	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,33:30:75:0.440:2	./.	./.	./.	./.	./.
chr4	7691290	rs185727915	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	7714490	rs4689833	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,54:32:55:0.982:2	0/1:0,41:32:41:1.00:2	0/1:0,4:31:4:1.00:2	0/1:48,41:32:89:0.461:2	0/1:0,81:31:82:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,84:33:84:1.00:2	0/1:55,47:32:103:0.461:2	0/1:0,60:32:60:1.00:2
chr4	7716910	rs28531835	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,43:31:99:0.434:2	./.	./.	./.	./.
chr4	7716932	rs6816604	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:32:69:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,17:32:17:1.00:2	0/1:1,141:32:142:0.993:2	0/1:0,138:32:138:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,127:32:127:1.00:2	./.	0/1:0,120:33:120:1.00:2	0/1:54,40:31:94:0.426:2	0/1:0,88:32:88:1.00:2
chr4	7717012	rs2285781	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:32:43:1.00:2	0/1:0,44:32:44:1.00:2	0/1:8,8:32:16:0.500:2	0/1:53,31:30:84:0.369:2	0/1:64,46:31:110:0.418:2	0/1:1,79:31:80:0.988:2	0/1:69,61:31:130:0.469:2	0/1:3,118:31:121:0.975:2	0/1:0,82:32:82:1.00:2	0/1:37,35:31:72:0.486:2	0/1:49,33:32:82:0.402:2
chr4	7735055	rs200651445	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:40,6:22:46:0.130:2	./.	./.	0/1:69,27:18:96:0.281:2	0/1:69,13:19:82:0.159:2	0/1:71,32:17:103:0.311:2	0/1:85,26:23:111:0.234:2	0/1:81,27:16:108:0.250:2	./.	0/1:53,17:14:70:0.243:2	0/1:41,7:16:48:0.146:2
chr4	7735111	rs79532786	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,36:31:84:0.429:2	./.	./.	./.	./.
chr4	7765495	rs2240053	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,67:31:148:0.453:2	./.	./.	./.	./.	./.
chr4	7770723	rs2285761	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	0/1:9,17:32:26:0.654:2	0/1:22,18:32:40:0.450:2	./.	0/1:25,31:32:56:0.554:2	./.	0/1:8,11:34:19:0.579:2	0/1:6,17:32:23:0.739:2
chr4	7774610	rs2276967	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,24:31:64:0.375:2	./.	./.	./.	./.	./.
chr4	7780582	rs41264705	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,12:32:13:0.923:2	0/1:2,11:31:13:0.846:2	./.	./.	0/1:2,4:31:6:0.667:2	./.	0/1:3,3:32:6:0.500:2	0/1:6,4:32:10:0.400:2	0/1:3,6:33:9:0.667:2	./.	./.
chr4	7783163	rs28542374	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,109:33:110:0.991:2	0/1:2,61:32:63:0.968:2	0/1:0,12:32:12:1.00:2	0/1:97,81:32:178:0.455:2	0/1:0,120:32:120:1.00:2	0/1:0,159:32:159:1.00:2	0/1:2,151:32:153:0.987:2	0/1:3,152:32:155:0.981:2	0/1:71,77:33:148:0.520:2	0/1:70,50:32:120:0.417:2	0/1:69,72:32:141:0.511:2
chr4	7783172	rs77207711	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,70:32:152:0.461:2	./.	0/1:77,69:32:146:0.473:2
chr4	7783286	rs10516189	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,51:30:129:0.395:2	./.	./.	./.	./.	./.
chr4	7802227	rs28406288	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,10:32:15:0.667:2	0/1:70,75:32:145:0.517:2	./.	0/1:69,59:31:128:0.461:2	0/1:48,71:32:119:0.597:2	./.	./.	./.	0/1:53,84:32:137:0.613:2
chr4	7802292	rs11728778	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:2,116:32:118:0.983:2	0/1:2,68:32:70:0.971:2	./.	./.	0/1:92,61:31:153:0.399:2	./.	0/1:110,66:32:176:0.375:2	0/1:113,77:31:191:0.405:2	0/1:114,69:33:183:0.377:2	./.	./.
chr4	7845067	rs62289296	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,15:33:37:0.405:2	./.	./.	./.	./.	./.	./.
chr4	7857230	rs61742221	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:31:69:1.00:2	0/1:0,38:32:38:1.00:2	0/1:10,6:32:16:0.375:2	0/1:48,29:31:77:0.377:2	0/1:57,39:31:96:0.406:2	0/1:32,38:31:70:0.543:2	0/1:0,92:31:92:1.00:2	0/1:0,92:32:92:1.00:2	0/1:32,48:32:80:0.600:2	./.	0/1:33,38:32:71:0.535:2
chr4	8009881	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:34:183:0.022:2	./.	./.
chr4	8010757	rs74845648	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,29:31:91:0.319:2	./.	./.	./.	./.	0/1:60,53:31:113:0.469:2	./.
chr4	8021417	rs34477140	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,2:35:4:0.500:2	0/1:15,18:32:33:0.545:2	0/1:4,15:32:19:0.789:2	0/1:14,25:31:39:0.641:2	./.	0/1:0,52:32:52:1.00:2	./.	0/1:13,8:33:21:0.381:2	./.
chr4	8022010	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,8:16:56:0.143:2	./.	./.	./.	./.	./.	./.
chr4	8031471	rs2385904	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:33:6:1.00:2	0/1:0,29:32:29:1.00:2	0/1:22,20:33:42:0.476:2	0/1:38,28:33:66:0.424:2	0/1:20,20:32:40:0.500:2	0/1:0,27:32:27:1.00:2	0/1:9,17:30:26:0.654:2	0/1:12,24:32:36:0.667:2	0/1:0,42:31:42:1.00:2
chr4	8062689	rs35187044	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,21:33:64:0.328:2	0/1:30,9:32:39:0.231:2	0/1:0,17:32:17:1.00:2	0/1:1,113:30:114:0.991:2	0/1:1,94:31:95:0.989:2	0/1:0,89:30:89:1.00:2	0/1:101,36:33:137:0.263:2	0/1:0,131:31:131:1.00:2	0/1:0,59:33:59:1.00:2	0/1:0,101:30:101:1.00:2	./.
chr4	8062690	rs10938683	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:42,21:32:63:0.333:2	0/1:30,9:31:39:0.231:2	0/1:8,9:31:17:0.529:2	./.	0/1:38,57:31:95:0.600:2	0/1:63,27:31:90:0.300:2	0/1:101,36:32:137:0.263:2	0/1:87,47:31:134:0.351:2	0/1:0,59:32:59:1.00:2	./.	./.
chr4	8098856	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,24:11:156:0.157:2	./.	./.	./.	0/1:136,14:15:151:0.093:2	./.
chr4	8207083	rs2677605	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:31:10:1.00:2	0/1:37,42:29:79:0.532:2	0/1:57,44:28:101:0.436:2	0/1:55,34:30:91:0.382:2	./.	0/1:63,35:30:98:0.357:2	0/1:43,28:29:71:0.394:2	0/1:0,57:30:57:1.00:2	0/1:0,44:30:44:1.00:2
chr4	8220029	rs1281138	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,16:31:26:0.615:2	./.	./.	./.	./.	./.	./.
chr4	8226871	rs199816207	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,18:9:79:0.228:2	./.
chr4	8228731	rs1281145	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,119:29:119:1.00:2	0/1:0,74:29:74:1.00:2	0/1:0,17:29:17:1.00:2	0/1:0,128:29:128:1.00:2	0/1:0,135:27:135:1.00:2	0/1:0,161:28:161:1.00:2	0/1:0,156:29:156:1.00:2	0/1:0,184:29:184:1.00:2	0/1:0,159:30:159:1.00:2	0/1:0,158:30:158:1.00:2	0/1:0,154:29:154:1.00:2
chr4	8228894	rs1292647	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,58:29:59:0.983:2	0/1:0,41:29:41:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,128:29:128:1.00:2	0/1:0,133:29:133:1.00:2	0/1:0,124:30:124:1.00:2	0/1:1,107:30:109:0.991:2	0/1:0,169:29:169:1.00:2	0/1:0,120:30:120:1.00:2	0/1:0,92:29:92:1.00:2	0/1:0,89:29:89:1.00:2
chr4	8228943	rs34994651	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,57:29:120:0.475:2	./.	./.	./.	./.	./.
chr4	8228948	rs55642964	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,15:29:25:0.600:2	0/1:70,41:28:111:0.369:2	./.	0/1:64,58:28:122:0.475:2	0/1:63,46:28:109:0.422:2	0/1:96,63:28:159:0.396:2	./.	./.	0/1:44,25:27:69:0.362:2
chr4	8229218	rs1281146	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:33:94:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,155:33:155:1.00:2	0/1:0,129:33:129:1.00:2	0/1:0,139:33:139:1.00:2	0/1:0,130:33:130:1.00:2	0/1:0,179:33:179:1.00:2	0/1:0,132:33:132:1.00:2	0/1:0,114:33:114:1.00:2	0/1:0,126:33:126:1.00:2
chr4	8229326	rs1281147	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:26:58:1.00:2	0/1:0,27:26:27:1.00:2	0/1:0,7:28:7:1.00:2	0/1:0,66:27:66:1.00:2	0/1:0,73:27:73:1.00:2	0/1:0,76:28:76:1.00:2	0/1:0,60:28:60:1.00:2	0/1:0,60:26:60:1.00:2	0/1:0,74:27:74:1.00:2	0/1:0,36:27:36:1.00:2	0/1:0,61:26:61:1.00:2
chr4	8229713	rs1281148	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,13:32:31:0.419:2	0/1:10,4:30:14:0.286:2	0/1:0,3:31:3:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,17:28:17:1.00:2	0/1:0,24:30:24:1.00:2	0/1:14,6:28:20:0.300:2	0/1:2,23:31:25:0.920:2	0/1:6,18:32:24:0.750:2	0/1:0,22:32:22:1.00:2	0/1:0,11:30:11:1.00:2
chr4	8229774	rs1281149	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,15:31:26:0.577:2	0/1:12,9:31:21:0.429:2	0/1:0,5:30:5:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,23:29:24:1.00:2	0/1:7,5:28:12:0.417:2	0/1:0,22:30:22:1.00:2	0/1:8,7:31:15:0.467:2	0/1:0,22:32:22:1.00:2	0/1:0,13:31:13:1.00:2
chr4	8230070	rs1281150	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,4:24:12:0.333:2	0/1:7,9:28:16:0.563:2	./.	0/1:0,11:27:11:1.00:2	0/1:0,9:28:9:1.00:2	0/1:0,14:25:14:1.00:2	./.	0/1:0,9:28:9:1.00:2	0/1:15,6:26:21:0.286:2	0/1:0,5:29:5:1.00:2	0/1:0,6:28:6:1.00:2
chr4	8230235	rs1281151	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,8:32:27:0.296:2	0/1:13,13:30:26:0.500:2	0/1:0,3:25:3:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,25:29:25:1.00:2	0/1:0,24:30:24:1.00:2	0/1:29,4:31:33:0.121:2	0/1:4,28:29:32:0.875:2	0/1:13,9:31:22:0.409:2	0/1:0,20:29:20:1.00:2	0/1:0,14:28:14:1.00:2
chr4	8235220	rs111285143	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:31:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	8238131	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:34:167:0.024:2	./.	./.
chr4	8238151	rs11603	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,6:32:10:0.600:2	0/1:97,77:32:174:0.443:2	./.	0/1:0,174:31:174:1.00:2	0/1:91,79:31:170:0.465:2	0/1:100,70:32:170:0.412:2	./.	./.	0/1:47,69:32:116:0.595:2
chr4	8242466	rs1281103	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:30:56:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,86:30:86:1.00:2	0/1:0,64:29:64:1.00:2	0/1:0,83:30:83:1.00:2	0/1:0,66:29:66:1.00:2	0/1:0,66:29:66:1.00:2	0/1:0,82:30:82:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,72:29:72:1.00:2
chr4	8242499	rs1048506	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,25:29:56:0.446:2	./.	./.	./.	./.	./.	./.
chr4	8368748	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,3:34:45:0.067:2	./.	./.	./.	./.
chr4	8375342	rs2280571	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:24,10:31:34:0.294:2	0/1:7,10:32:17:0.588:2	0/1:6,4:33:10:0.400:2	./.	0/1:39,37:32:76:0.487:2	./.	./.	0/1:51,39:33:90:0.433:2	./.	0/1:34,22:32:57:0.393:2	./.
chr4	8394094	rs28627156	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,15:32:36:0.417:2	0/1:11,13:31:24:0.542:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	8416586	rs73211315	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,54:33:80:0.675:2	./.	./.	./.	./.	./.	./.	./.
chr4	8416644	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,3:36:97:0.031:2	./.	./.	./.	./.	./.
chr4	8418148	rs12513296	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,34:29:71:0.486:2	./.	./.	./.	./.	./.	./.	./.
chr4	8467157	rs34873641	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,59:31:124:0.476:2	./.	./.	./.	./.	./.	./.	./.
chr4	8582742	rs17844776	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,14:30:28:0.500:2	0/1:6,7:31:13:0.538:2	0/1:0,4:29:4:1.00:2	0/1:30,19:30:49:0.388:2	0/1:39,26:30:65:0.400:2	./.	0/1:20,17:29:37:0.459:2	0/1:2,61:29:63:0.968:2	0/1:29,18:31:47:0.383:2	./.	./.
chr4	8582856	rs17844777	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,14:32:36:0.389:2	0/1:10,4:31:14:0.286:2	0/1:1,4:31:5:0.800:2	0/1:25,23:31:48:0.479:2	0/1:33,16:31:49:0.327:2	./.	0/1:28,9:31:37:0.243:2	0/1:0,29:30:29:1.00:2	0/1:15,7:33:22:0.318:2	./.	./.
chr4	8583312	rs17844778	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	8584270	rs368181816	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:30:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	8588787	rs61746124	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,84:32:149:0.568:2	./.	./.	./.	./.	./.	./.	./.
chr4	8588986	rs11941659	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,72:31:129:0.558:2	./.	./.	./.	./.	./.	./.	./.
chr4	8589023	rs9685931	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,12:29:22:0.545:2	./.	./.	0/1:84,67:30:151:0.444:2	./.	./.	./.	./.	./.
chr4	8589045	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:149,6:31:155:0.039:2	./.	./.	./.	./.	./.	./.
chr4	8594572	rs76756393	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.
chr4	8594574	rs2302583	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	0/1:0,2:29:2:1.00:2
chr4	8594577	rs34964084	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	0/1:0,2:32:2:1.00:2
chr4	8594616	rs79736750	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.
chr4	8602884	rs4301095	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:29:55:1.00:2	0/1:0,44:30:44:1.00:2	0/1:0,12:31:12:1.00:2	0/1:1,104:30:105:0.990:2	0/1:0,108:31:108:1.00:2	0/1:0,115:31:115:1.00:2	0/1:3,75:31:78:0.962:2	0/1:0,109:30:109:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,45:29:45:1.00:2
chr4	8602935	rs4431213	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:29:69:1.00:2	0/1:0,61:28:61:1.00:2	0/1:0,13:28:13:1.00:2	0/1:1,176:29:177:0.994:2	0/1:0,186:29:186:1.00:2	0/1:0,172:29:172:1.00:2	0/1:0,186:29:186:1.00:2	0/1:0,172:29:172:1.00:2	0/1:0,150:30:150:1.00:2	0/1:0,121:29:121:1.00:2	0/1:0,97:29:97:1.00:2
chr4	8603117	rs35993494	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:29:5:0.600:2	./.	./.	0/1:6,8:32:14:0.571:2	./.
chr4	8605818	rs6852001	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,6:28:8:0.750:2	./.	./.	0/1:3,8:30:11:0.727:2	0/1:0,4:30:4:1.00:2	./.	./.	./.	0/1:0,6:30:6:1.00:2	./.	0/1:1,6:31:7:0.857:2
chr4	8608538	rs137864072	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,42:30:91:0.462:2	./.
chr4	8613762	rs147588134	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,5:31:24:0.208:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	8616096	rs1131140	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:44,42:32:86:0.488:2	0/1:14,28:31:42:0.667:2	0/1:8,5:34:13:0.385:2	./.	./.	0/1:0,77:30:77:1.00:2	0/1:77,66:32:144:0.462:2	0/1:0,164:31:164:1.00:2	./.	0/1:39,39:31:78:0.500:2	./.
chr4	8616179	rs7378066	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,115:31:115:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,106:31:106:1.00:2	0/1:0,134:31:134:1.00:2	0/1:0,148:32:148:1.00:2	0/1:0,168:32:168:1.00:2	./.	0/1:1,131:32:132:0.992:2	0/1:0,121:32:121:1.00:2	0/1:0,101:31:101:1.00:2
chr4	8621094	rs113699437	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:34:191:0.021:2	./.
chr4	8621194	rs28514374	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,3:31:3:1.00:2	0/1:1,53:31:54:0.981:2	0/1:0,68:30:68:1.00:2	0/1:0,75:31:75:1.00:2	0/1:1,64:31:65:0.985:2	0/1:1,84:31:85:0.988:2	0/1:1,52:31:53:0.981:2	0/1:0,48:31:48:1.00:2	0/1:0,55:31:55:1.00:2
chr4	9452164	rs200007452	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,25:31:199:0.126:2	./.	./.	./.	./.
chr4	9485710	rs146544875	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,76:31:170:0.450:2	./.	./.	./.	./.
chr4	9485805	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,5:31:63:0.079:2	./.	./.	./.	./.	./.	./.
chr4	9485841	rs10212937	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:34:4:1.00:2	0/1:23,22:32:45:0.489:2	0/1:4,23:31:27:0.852:2	0/1:24,21:32:45:0.467:2	0/1:1,26:32:27:0.963:2	0/1:24,17:32:41:0.415:2	0/1:0,41:33:41:1.00:2	0/1:30,27:32:57:0.474:2	0/1:0,44:32:44:1.00:2
chr4	9485912	rs34152452	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,39:32:39:1.00:2	0/1:0,29:32:29:1.00:2	./.	0/1:30,20:31:50:0.400:2	./.	0/1:20,26:31:46:0.565:2	./.	./.	./.	./.	./.
chr4	9486060	rs9762741	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,161:32:162:0.994:2	0/1:1,101:32:102:0.990:2	./.	0/1:113,58:32:171:0.339:2	./.	0/1:98,66:32:164:0.402:2	./.	./.	./.	./.	./.
chr4	9486066	rs9759877	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,160:32:161:0.994:2	0/1:1,96:32:97:0.990:2	./.	0/1:103,55:31:158:0.348:2	./.	0/1:94,64:31:158:0.405:2	./.	./.	./.	./.	./.
chr4	9486098	rs114281488	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,85:33:191:0.445:2
chr4	9783838	rs2227840	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:110,4:32:114:0.035:2	./.	./.	./.	./.	./.	./.
chr4	9783875	rs201023282	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:93,4:32:97:0.041:2	0/1:73,4:33:77:0.052:2	./.	./.	0/1:152,17:32:169:0.101:2	0/1:130,8:33:138:0.058:2	0/1:101,10:32:111:0.090:2	0/1:177,7:33:184:0.038:2	./.	./.	./.
chr4	9783905	rs2227848	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:78,7:32:85:0.082:2	0/1:66,8:31:74:0.108:2	./.	./.	0/1:151,24:31:175:0.137:2	0/1:124,12:29:136:0.088:2	0/1:97,18:30:115:0.157:2	0/1:157,9:31:166:0.054:2	0/1:110,4:32:114:0.035:2	./.	./.
chr4	9783915	rs148402761	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,63:32:142:0.444:2	./.	0/1:70,60:32:130:0.462:2	./.	./.	./.	./.	./.
chr4	9783917	rs76288744	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:74,7:32:81:0.086:2	0/1:59,8:32:67:0.119:2	./.	./.	0/1:150,23:31:174:0.133:2	0/1:120,12:31:132:0.091:2	0/1:94,18:30:112:0.161:2	0/1:155,9:32:164:0.055:2	0/1:104,4:33:108:0.037:2	./.	./.
chr4	9783971	rs113695344	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:71,4:29:75:0.053:2	0/1:43,4:33:47:0.085:2	./.	./.	0/1:109,17:30:126:0.135:2	0/1:90,5:32:95:0.053:2	0/1:111,6:31:117:0.051:2	./.	./.	./.	./.
chr4	9783982	rs2227849	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:111,7:29:118:0.059:2	./.	./.	./.	./.	./.	./.
chr4	9784028	rs2227841	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,6:31:81:0.074:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	9784063	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,6:31:76:0.079:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	9784098	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,5:29:84:0.060:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	9784542	rs2227851	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,3:33:17:0.176:2	./.	./.	./.	./.	0/1:27,3:33:30:0.100:2	0/1:18,3:34:21:0.143:2
chr4	9784550	rs2227844	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,3:33:18:0.167:2	./.	./.	./.	./.	0/1:27,4:33:31:0.129:2	0/1:18,3:33:21:0.143:2
chr4	9784631	rs6283	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:33:5:1.00:2	0/1:13,9:32:22:0.409:2	0/1:0,15:32:15:1.00:2	0/1:35,16:31:51:0.314:2	0/1:1,34:32:35:0.971:2	0/1:24,14:32:38:0.368:2	0/1:22,8:31:30:0.267:2	0/1:9,12:32:21:0.571:2	0/1:26,16:32:42:0.381:2
chr4	9784853	.	C	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,8:32:156:0.051:2	0/1:179,13:31:193:0.068:2	0/1:158,5:32:163:0.031:2	./.	0/1:184,10:32:194:0.052:2	0/1:155,5:33:160:0.031:2	0/1:120,5:33:125:0.040:2	./.
chr4	9784882	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:145,8:33:153:0.052:2	0/1:183,12:30:195:0.062:2	0/1:186,4:33:190:0.021:2	./.	0/1:183,10:32:194:0.052:2	0/1:173,5:35:178:0.028:2	0/1:138,5:33:143:0.035:2	./.
chr4	9785060	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:31:74:0.054:2	./.
chr4	9785072	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,5:26:91:0.055:2	./.
chr4	9785134	rs1967551	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,13:31:13:1.00:2	0/1:64,55:32:119:0.462:2	0/1:1,91:32:92:0.989:2	0/1:69,49:32:118:0.415:2	0/1:0,101:32:101:1.00:2	0/1:80,69:32:149:0.463:2	0/1:71,70:33:141:0.496:2	0/1:60,48:33:108:0.444:2	0/1:74,52:33:126:0.413:2
chr4	9785250	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:32:199:0.020:2	./.	./.	./.
chr4	9785265	rs1967550	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,18:31:29:0.621:2	0/1:119,72:31:191:0.377:2	0/1:5,174:31:179:0.972:2	0/1:105,83:31:188:0.441:2	0/1:6,176:31:183:0.967:2	0/1:107,80:31:187:0.428:2	0/1:108,78:32:186:0.419:2	0/1:99,88:32:187:0.471:2	0/1:103,85:31:188:0.452:2
chr4	9785535	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:32:98:0.041:2	./.	./.	./.
chr4	9828099	rs144428359	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,48:31:104:0.462:2	./.	./.	./.	./.	./.	./.
chr4	9909923	rs2280205	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,11:32:16:0.688:2	./.	0/1:1,108:33:109:0.991:2	0/1:68,39:31:107:0.364:2	0/1:3,91:32:94:0.968:2	./.	./.	0/1:59,35:32:94:0.372:2	0/1:58,48:33:106:0.453:2
chr4	9922130	rs3733591	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,51:32:96:0.531:2	./.
chr4	9922167	rs16890979	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,31:32:75:0.413:2	0/1:36,16:32:52:0.308:2	0/1:10,3:31:13:0.231:2	0/1:77,72:31:149:0.483:2	./.	./.	./.	0/1:96,66:31:162:0.407:2	0/1:1,88:32:89:0.989:2	0/1:42,34:31:76:0.447:2	0/1:62,69:31:132:0.527:2
chr4	9943585	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:31:74:0.054:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	9982330	rs13125646	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,38:32:93:0.409:2	0/1:32,43:33:75:0.573:2	0/1:14,9:33:23:0.391:2	0/1:78,72:32:150:0.480:2	0/1:0,126:32:126:1.00:2	0/1:0,149:32:149:1.00:2	0/1:0,152:33:152:1.00:2	0/1:104,72:33:176:0.409:2	./.	0/1:62,57:33:119:0.479:2	0/1:69,77:33:146:0.527:2
chr4	9998440	rs10939650	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,67:31:149:0.450:2	0/1:42,33:31:75:0.440:2	0/1:0,11:31:11:1.00:2	0/1:98,80:31:179:0.449:2	0/1:2,121:31:123:0.984:2	0/1:1,190:30:191:0.995:2	0/1:0,132:31:132:1.00:2	0/1:3,189:31:192:0.984:2	0/1:2,161:32:163:0.988:2	0/1:93,77:32:170:0.453:2	0/1:101,71:32:172:0.413:2
chr4	9998493	rs13113918	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,73:34:156:0.468:2	0/1:47,45:32:92:0.489:2	0/1:0,11:32:11:1.00:2	0/1:101,84:33:185:0.454:2	0/1:1,121:32:122:0.992:2	0/1:0,168:33:168:1.00:2	0/1:0,146:33:146:1.00:2	0/1:0,155:33:156:1.00:2	0/1:1,160:34:161:0.994:2	0/1:91,87:33:178:0.489:2	0/1:105,79:33:184:0.429:2
chr4	10022981	rs2276961	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,12:31:25:0.480:2	./.	0/1:5,174:32:180:0.972:2	0/1:83,106:32:189:0.561:2	0/1:0,181:32:181:1.00:2	0/1:97,100:32:197:0.508:2	0/1:2,180:33:182:0.989:2	0/1:85,72:33:157:0.459:2	./.
chr4	10027542	rs6820230	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:45,38:32:83:0.458:2	0/1:24,25:31:49:0.510:2	./.	0/1:31,45:32:76:0.592:2	./.	0/1:50,33:31:83:0.398:2	./.	0/1:31,26:32:58:0.456:2	./.	0/1:39,47:30:86:0.547:2	0/1:0,107:31:107:1.00:2
chr4	10099340	rs13441	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,31:33:71:0.437:2	0/1:28,18:31:46:0.391:2	0/1:5,5:32:10:0.500:2	0/1:1,60:32:61:0.984:2	0/1:1,48:32:49:0.980:2	0/1:1,65:32:66:0.985:2	0/1:40,41:32:81:0.506:2	0/1:36,42:32:78:0.538:2	./.	0/1:35,36:33:71:0.507:2	0/1:0,88:32:88:1.00:2
chr4	10445427	rs7694496	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:31:10:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	10446385	rs9291410	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,113:31:113:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,112:31:112:1.00:2	0/1:1,100:31:101:0.990:2	0/1:0,97:31:97:1.00:2	0/1:0,109:31:109:1.00:2	0/1:0,111:31:111:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,92:31:93:1.00:2	0/1:0,144:31:144:1.00:2
chr4	10446906	rs10016022	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,139:30:140:0.993:2	0/1:0,89:29:89:1.00:2	0/1:0,13:27:13:1.00:2	0/1:101,77:29:178:0.433:2	0/1:2,149:29:151:0.987:2	0/1:0,148:29:148:1.00:2	0/1:114,82:29:197:0.418:2	0/1:0,153:29:153:1.00:2	0/1:86,88:30:174:0.506:2	0/1:66,71:30:137:0.518:2	0/1:1,160:30:161:0.994:2
chr4	10447168	rs66538112	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,30:32:79:0.380:2	./.	./.	0/1:16,16:31:32:0.500:2	./.	0/1:39,30:34:69:0.435:2	0/1:43,23:33:66:0.348:2	./.
chr4	10447640	rs10016702	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,31:33:63:0.492:2	0/1:19,11:33:30:0.367:2	0/1:2,6:31:8:0.750:2	0/1:31,33:32:64:0.516:2	./.	0/1:28,18:31:46:0.391:2	./.	./.	./.	./.	./.
chr4	10447679	rs10007352	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,11:33:17:0.647:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	10447848	rs10021506	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:31:16:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	10502937	rs2903960	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:32:58:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,76:33:76:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,79:33:79:1.00:2	0/1:0,75:33:75:1.00:2	0/1:0,85:33:85:1.00:2	0/1:0,64:33:64:1.00:2	0/1:0,83:33:83:1.00:2
chr4	10567717	rs182688260	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:32:12:0.583:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	10573410	rs17383033	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,11:31:31:0.355:2	./.
chr4	10586530	rs6846414	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,17:31:26:0.654:2	./.
chr4	10586571	rs61759824	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:11,11:33:22:0.500:2	0/1:9,4:32:13:0.308:2	./.	./.	./.	./.	./.	0/1:25,23:33:48:0.479:2	./.	./.	./.
chr4	10669462	rs369540268	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,3:34:13:0.231:2	0/1:113,7:30:120:0.058:2	0/1:88,7:33:96:0.074:2	./.	0/1:80,7:32:87:0.080:2	./.	0/1:85,5:34:90:0.056:2	./.	./.
chr4	10669496	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,45:31:90:0.500:2	./.	./.	./.	./.	./.
chr4	10669522	rs13136927	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,78:32:80:0.975:2	0/1:1,35:32:36:0.972:2	./.	0/1:45,32:32:77:0.416:2	0/1:50,30:32:80:0.375:2	0/1:2,73:31:75:0.973:2	./.	0/1:62,37:32:99:0.374:2	0/1:53,42:32:95:0.442:2	0/1:36,36:31:72:0.500:2	0/1:0,82:31:82:1.00:2
chr4	11400707	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	11401012	rs1047385	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:32:11:0.455:2	./.	0/1:0,99:31:99:1.00:2	0/1:38,36:32:74:0.486:2	./.	./.	./.	./.	./.
chr4	11401087	rs1047389	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,9:31:14:0.643:2	./.	0/1:2,165:29:167:0.988:2	0/1:63,68:29:131:0.519:2	./.	./.	./.	./.	./.
chr4	13545792	rs9684692	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,4:32:4:1.00:2	./.	0/1:0,4:33:4:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,6:26:6:1.00:2	0/1:0,2:30:2:1.00:2	0/1:0,10:31:10:1.00:2	./.	./.	./.
chr4	13546017	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.
chr4	13601337	rs3733557	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,42:32:96:0.438:2	0/1:37,23:32:60:0.383:2	./.	./.	./.	./.	./.	./.	0/1:44,45:32:89:0.506:2	./.	./.
chr4	13603200	rs61995954	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,5:33:15:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	13603591	rs17807493	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,19:31:66:0.288:2	./.	./.	./.
chr4	13603916	rs199972825	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:71,7:19:79:0.090:2	./.	./.	0/1:88,19:16:109:0.178:2	0/1:92,16:15:108:0.148:2	./.	./.	0/1:93,13:13:106:0.123:2	./.	./.	0/1:78,9:16:87:0.103:2
chr4	13604182	rs17745676	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,76:33:158:0.481:2	./.	./.	0/1:71,99:33:170:0.582:2	./.
chr4	13604418	rs17745712	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,108:32:195:0.554:2	./.	./.	0/1:89,93:31:182:0.511:2	./.
chr4	13606576	rs1971278	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:55,53:31:108:0.491:2	0/1:31,25:32:56:0.446:2	0/1:8,8:30:16:0.500:2	./.	0/1:0,55:31:55:1.00:2	0/1:63,68:31:131:0.519:2	0/1:2,84:31:86:0.977:2	0/1:70,54:31:124:0.435:2	0/1:71,64:32:135:0.474:2	0/1:77,65:32:142:0.458:2	0/1:111,85:31:196:0.434:2
chr4	13615174	rs2035820	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,64:32:196:0.328:2	./.	./.	0/1:111,83:32:194:0.428:2	./.
chr4	15437579	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:26:53:0.075:2	./.	./.	./.	./.	./.
chr4	15482360	rs1861050	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,12:32:31:0.387:2	./.	./.	./.	./.	./.	./.
chr4	15516389	rs2286976	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,77:32:147:0.524:2	./.	./.	0/1:82,48:32:130:0.369:2	./.	./.	./.	./.
chr4	15569018	rs73125627	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:109,84:33:193:0.435:2	0/1:74,52:32:126:0.413:2	0/1:15,11:31:26:0.423:2	0/1:191,6:32:197:0.030:2	0/1:105,68:32:173:0.393:2	0/1:99,93:31:192:0.484:2	./.	0/1:117,81:31:198:0.409:2	0/1:102,97:33:199:0.487:2	./.	./.
chr4	15613967	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:169,4:32:173:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr4	15627238	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:32:104:0.038:2	./.	./.	./.	./.	./.
chr4	15632325	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:32:195:0.021:2
chr4	15640168	rs3182730	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,15:31:34:0.441:2	0/1:46,23:32:69:0.333:2
chr4	15688604	rs2302469	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,20:32:49:0.408:2	./.	./.	./.
chr4	15689064	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,7:26:83:0.084:2	./.	./.	./.	./.
chr4	15689632	rs11729955	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:31:10:0.500:2	0/1:27,27:32:54:0.500:2	./.	./.	./.	0/1:17,35:33:52:0.673:2	./.	0/1:0,57:32:57:1.00:2	0/1:0,118:33:118:1.00:2
chr4	15689816	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:129:0.031:2
chr4	15689928	rs4235380	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:51,51:32:102:0.500:2	0/1:27,16:32:43:0.372:2	0/1:5,6:32:11:0.545:2	./.	0/1:38,29:31:67:0.433:2	0/1:35,47:31:82:0.573:2	0/1:45,37:31:82:0.451:2	0/1:53,50:31:103:0.485:2	0/1:36,39:32:75:0.520:2	./.	./.
chr4	15690233	rs6449160	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:32:96:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,114:31:114:1.00:2	0/1:0,71:30:71:1.00:2	0/1:0,89:30:89:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,100:31:100:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,139:31:139:1.00:2
chr4	15690530	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:31:148:0.027:2	./.	./.	./.	./.	./.
chr4	15692058	rs6815254	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:28:9:0.556:2	./.	./.	./.	./.	./.	0/1:0,3:26:3:1.00:2	0/1:1,11:27:12:0.917:2
chr4	15704839	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	15709192	rs2302465	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,86:31:159:0.541:2	./.	./.	./.
chr4	15709252	rs2302464	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,28:30:61:0.459:2	./.	./.	./.	./.
chr4	15713446	rs2302463	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,14:32:41:0.341:2	./.	./.	./.	./.
chr4	15724487	rs7672395	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,19:33:35:0.543:2	./.	./.	./.	./.
chr4	15733447	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:32:133:0.030:2
chr4	15733454	rs1058212	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,30:29:63:0.476:2	./.	./.	./.	./.
chr4	15835844	rs1800051	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,17:33:34:0.500:2	./.	./.	./.	./.
chr4	15850182	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:34:196:0.020:2	./.	./.
chr4	15937675	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:32:192:0.021:2	./.	./.
chr4	15937731	rs2072313	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,166:33:167:0.994:2	0/1:1,157:32:158:0.994:2	0/1:0,29:33:29:1.00:2	0/1:2,185:33:187:0.989:2	./.	0/1:114,73:33:187:0.390:2	0/1:2,180:33:182:0.989:2	0/1:0,181:33:181:1.00:2	0/1:0,175:34:175:1.00:2	0/1:111,83:33:194:0.428:2	0/1:1,182:33:183:0.995:2
chr4	15964349	rs59591720	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,47:30:77:0.610:2	./.	./.	./.	./.	./.
chr4	15964408	rs141225215	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,22:31:40:0.550:2	0/1:19,16:32:35:0.457:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	15964485	rs758329	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:5,7:31:12:0.583:2	0/1:5,10:32:15:0.667:2	./.	./.	0/1:12,7:31:19:0.368:2	./.	./.	0/1:8,6:32:14:0.429:2	0/1:9,10:32:19:0.526:2	./.	./.
chr4	15964501	rs2286459	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,5:32:14:0.357:2	0/1:9,4:33:13:0.308:2	0/1:0,2:32:2:1.00:2	0/1:0,22:31:22:1.00:2	0/1:7,7:31:14:0.500:2	./.	0/1:0,9:33:9:1.00:2	0/1:4,5:31:9:0.556:2	0/1:8,10:32:18:0.556:2	0/1:0,14:32:14:1.00:2	0/1:0,17:30:17:1.00:2
chr4	15964573	rs758328	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:27:22:1.00:2	0/1:0,12:27:12:1.00:2	0/1:0,4:28:4:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,18:26:18:1.00:2	0/1:8,9:27:17:0.529:2	0/1:0,19:29:19:1.00:2	0/1:0,15:28:15:1.00:2	0/1:0,13:28:13:1.00:2	0/1:0,17:29:17:1.00:2	0/1:0,24:28:25:1.00:2
chr4	15964670	rs35496730	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:23,13:32:36:0.361:2	0/1:12,19:32:31:0.613:2	./.	0/1:23,19:31:43:0.452:2	./.	./.	0/1:36,23:32:59:0.390:2	0/1:34,25:32:59:0.424:2	0/1:35,23:33:58:0.397:2	./.	./.
chr4	15964763	rs4698432	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,30:33:65:0.462:2	0/1:28,27:32:55:0.491:2	./.	0/1:41,30:32:71:0.423:2	./.	./.	0/1:27,16:33:43:0.372:2	0/1:0,41:32:41:1.00:2
chr4	16000018	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:30:78:0.051:2	./.	./.	./.	./.	./.
chr4	16008303	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:32:133:0.030:2	./.	./.	./.	./.
chr4	16020027	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:194:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	16020162	rs2286455	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,72:32:137:0.526:2	./.	./.	0/1:89,74:32:163:0.454:2	./.	./.	./.
chr4	16037352	rs2078622	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,15:32:41:0.366:2	0/1:11,6:31:17:0.353:2	0/1:2,3:31:5:0.600:2	0/1:30,20:32:50:0.400:2	0/1:16,12:30:28:0.429:2	0/1:0,47:30:47:1.00:2	./.	0/1:22,13:32:35:0.371:2	0/1:0,75:32:75:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,47:32:47:1.00:2
chr4	16040617	rs76963591	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,38:31:73:0.521:2	./.	./.	./.	./.	./.	./.	./.
chr4	16077401	rs10033086	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,33:31:85:0.388:2	./.	./.	./.	./.	./.
chr4	16077445	rs199533391	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,19:30:53:0.358:2	./.	./.	./.
chr4	16077515	rs10033189	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,18:31:45:0.400:2	./.	./.	./.	./.	./.
chr4	16215451	rs6823623	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,47:31:116:0.405:2	./.	./.	./.	./.	./.
chr4	16504323	.	T	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:94,25:11:119:0.210:2	./.	./.	./.	0/1:89,17:10:107:0.160:2	0/1:86,27:10:113:0.239:2	./.	0/1:98,29:10:127:0.228:2	./.	./.	0/1:97,15:12:112:0.134:2
chr4	17488761	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,56:33:112:0.500:2	./.
chr4	17503382	rs2597775	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:19,12:29:31:0.387:2	0/1:21,13:31:34:0.382:2	./.	./.	0/1:31,29:29:60:0.483:2	./.	0/1:25,22:29:47:0.468:2	./.	0/1:1,49:30:50:0.980:2	./.	./.
chr4	17503433	rs3733570	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	17506042	rs12645938	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,68:32:141:0.482:2	./.	./.	./.	./.	./.	./.	./.
chr4	17517099	rs1551091	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,113:32:113:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,129:31:129:1.00:2	0/1:0,79:33:79:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,120:32:120:1.00:2
chr4	17586703	rs3733576	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,26:30:50:0.520:2	0/1:19,13:30:32:0.406:2	0/1:0,5:32:5:1.00:2	0/1:0,56:29:56:1.00:2	0/1:0,44:29:44:1.00:2	0/1:0,31:29:31:1.00:2	0/1:0,52:30:52:1.00:2	0/1:35,33:29:68:0.485:2	0/1:49,32:31:81:0.395:2	0/1:29,26:29:55:0.473:2	0/1:39,39:29:78:0.500:2
chr4	17634213	rs6825562	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,26:32:26:1.00:2	0/1:0,24:32:24:1.00:2	./.	0/1:0,28:32:28:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,52:32:52:1.00:2
chr4	17635336	rs61741403	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,62:31:116:0.534:2
chr4	17660082	rs1860596	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,32:32:71:0.451:2	0/1:26,18:32:44:0.409:2	0/1:5,5:32:10:0.500:2	0/1:0,108:31:108:1.00:2	0/1:0,98:31:98:1.00:2	0/1:2,109:31:111:0.982:2	0/1:76,68:32:144:0.472:2	0/1:63,73:32:136:0.537:2	0/1:48,37:33:85:0.435:2	0/1:48,42:32:90:0.467:2	0/1:51,34:32:85:0.400:2
chr4	17690072	rs61741063	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,22:31:62:0.355:2	./.	./.	./.	./.	./.	./.	./.
chr4	17694943	rs3733579	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,40:32:96:0.417:2	0/1:45,29:32:74:0.392:2	0/1:3,9:32:12:0.750:2	0/1:1,103:32:104:0.990:2	0/1:0,77:32:77:1.00:2	0/1:0,104:32:104:1.00:2	0/1:50,37:32:87:0.425:2	0/1:1,90:32:91:0.989:2	0/1:80,49:33:129:0.380:2	0/1:64,34:32:98:0.347:2	0/1:86,63:32:149:0.423:2
chr4	17711076	rs3733583	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,24:33:57:0.421:2	0/1:21,25:33:46:0.543:2	0/1:4,5:33:9:0.556:2	0/1:0,56:33:56:1.00:2	0/1:41,27:32:68:0.397:2	0/1:53,37:33:90:0.411:2	0/1:0,64:33:64:1.00:2	0/1:36,49:32:85:0.576:2	0/1:0,63:33:63:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,39:33:39:1.00:2
chr4	17806248	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:29:93:0.043:2	./.
chr4	17816925	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,31:31:93:0.333:2	./.	./.	./.	./.	./.
chr4	17818885	rs2302212	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:31:48:1.00:2	0/1:0,47:30:47:1.00:2	0/1:2,6:30:8:0.750:2	0/1:20,23:30:43:0.535:2	0/1:27,19:31:46:0.413:2	0/1:25,23:31:48:0.479:2	0/1:17,13:31:30:0.433:2	0/1:21,17:31:38:0.447:2	0/1:0,48:31:48:1.00:2	0/1:17,23:31:40:0.575:2	0/1:0,56:31:56:1.00:2
chr4	17829990	rs3795243	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,12:32:18:0.667:2	./.	./.	0/1:82,70:32:153:0.461:2	./.	./.	./.	./.	./.
chr4	20520993	rs519813	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,5:32:5:1.00:2	./.	./.	0/1:0,4:33:4:1.00:2	./.	0/1:0,5:32:5:1.00:2	0/1:0,3:32:3:1.00:2	./.	0/1:0,3:33:3:1.00:2	0/1:0,4:34:4:1.00:2	0/1:0,3:33:3:1.00:2
chr4	20535204	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:157,4:32:161:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr4	20544184	rs7690492	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,6:30:17:0.353:2	./.	./.	0/1:92,56:31:148:0.378:2	./.	./.	0/1:90,84:33:174:0.483:2	0/1:92,78:33:170:0.459:2	./.
chr4	20552510	rs17542486	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,94:33:94:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr4	20598114	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:32:91:0.044:2	./.	./.	./.
chr4	20709411	rs57364495	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,31:31:74:0.419:2	0/1:37,23:30:60:0.383:2	0/1:38,23:32:61:0.377:2	./.	0/1:23,21:31:44:0.477:2	0/1:46,45:32:91:0.495:2	./.	0/1:52,31:32:83:0.373:2
chr4	20728966	rs17552929	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,24:33:52:0.471:2	./.	./.	./.	0/1:67,61:33:128:0.477:2	./.	./.
chr4	20751278	rs2322688	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,27:32:39:0.692:2	0/1:14,6:28:20:0.300:2	0/1:0,8:30:8:1.00:2	0/1:25,24:32:49:0.490:2	./.	0/1:15,12:32:27:0.444:2	0/1:0,34:32:34:1.00:2	./.	0/1:36,36:34:72:0.500:2	./.	./.
chr4	20760520	rs148511080	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,19:32:42:0.452:2	./.	./.	./.	./.	./.	./.	./.
chr4	20852166	rs3765121	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,25:28:25:1.00:2	0/1:9,18:28:27:0.667:2	0/1:15,11:30:26:0.423:2	./.
chr4	20852244	rs3765122	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,33:30:33:1.00:2	0/1:22,33:31:55:0.600:2	0/1:14,15:30:29:0.517:2	./.
chr4	21950259	rs6448102	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,111:32:111:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,135:32:135:1.00:2	0/1:0,174:32:174:1.00:2	0/1:0,161:32:161:1.00:2	0/1:0,135:33:135:1.00:2	0/1:0,149:32:149:1.00:2	0/1:0,116:33:116:1.00:2	0/1:0,127:32:127:1.00:2	0/1:0,120:32:120:1.00:2
chr4	22390167	rs9002	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:34,23:32:57:0.404:2	0/1:11,15:32:26:0.577:2	./.	0/1:60,45:31:105:0.429:2	./.	./.	0/1:73,35:31:108:0.324:2	./.	./.	./.	./.
chr4	22425877	rs61744997	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,55:30:130:0.423:2	0/1:42,49:30:91:0.538:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	22439914	rs6823735	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:57,40:31:97:0.412:2	0/1:22,19:29:41:0.463:2	./.	0/1:4,104:31:108:0.963:2	0/1:3,70:29:73:0.959:2	0/1:5,110:30:115:0.957:2	0/1:75,60:31:135:0.444:2	0/1:66,39:30:105:0.371:2	0/1:4,149:31:153:0.974:2	0/1:6,99:30:106:0.943:2	0/1:64,68:30:132:0.515:2
chr4	22439999	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:31:101:0.040:2	./.	./.	./.
chr4	22444301	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:167,6:29:173:0.035:2	./.	0/1:165,5:30:170:0.029:2	0/1:179,9:30:188:0.048:2	0/1:171,7:29:178:0.039:2	0/1:168,5:27:173:0.029:2	./.	./.
chr4	22446673	rs141210874	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:162,4:32:166:0.024:2	./.	./.	./.	0/1:144,4:32:148:0.027:2	./.	./.
chr4	22446688	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,5:34:172:0.029:2	./.	0/1:136,6:31:142:0.042:2	./.	./.
chr4	22446719	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:31:132:0.030:2	./.	./.	./.	./.
chr4	22517284	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.
chr4	22749148	rs36090352	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,83:31:174:0.477:2	./.	./.
chr4	22749692	rs16873108	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,44:30:94:0.468:2	./.	./.
chr4	22820489	rs33968830	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,9:30:29:0.310:2	0/1:10,6:31:16:0.375:2	./.	./.	./.	0/1:26,17:30:43:0.395:2	./.	./.	./.	./.	./.
chr4	22820504	rs358231	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:32:24:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,35:31:35:1.00:2	0/1:20,28:33:48:0.583:2	0/1:0,52:32:52:1.00:2	0/1:0,48:32:48:1.00:2
chr4	23814707	rs3736265	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,86:31:194:0.443:2	./.	./.	./.	./.	./.	./.
chr4	23815522	rs3755863	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,61:32:130:0.469:2	0/1:33,32:32:65:0.492:2	0/1:8,7:32:15:0.467:2	0/1:72,59:31:131:0.450:2	0/1:39,46:31:85:0.541:2	./.	./.	0/1:98,76:31:174:0.437:2	0/1:2,124:32:126:0.984:2	0/1:67,58:32:125:0.464:2	0/1:81,56:32:137:0.409:2
chr4	23815662	rs8192678	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,35:33:73:0.479:2	0/1:31,14:32:45:0.311:2	0/1:7,3:33:10:0.300:2	0/1:36,43:32:79:0.544:2	0/1:28,34:30:62:0.548:2	./.	./.	0/1:49,38:32:87:0.437:2	0/1:2,83:33:85:0.976:2	0/1:23,20:33:43:0.465:2	./.
chr4	23815681	rs17574213	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,40:31:92:0.435:2	./.	./.	./.	./.	./.	0/1:25,34:33:59:0.576:2	./.
chr4	23815878	rs34514918	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,23:31:44:0.523:2	./.	./.	./.	./.	./.
chr4	23815924	rs2970847	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:31:45:1.00:2	0/1:0,31:29:31:1.00:2	0/1:4,4:30:8:0.500:2	0/1:27,22:30:49:0.449:2	0/1:0,23:30:23:1.00:2	0/1:0,44:29:44:1.00:2	./.	0/1:0,22:29:22:1.00:2	0/1:0,44:30:44:1.00:2	0/1:13,20:32:33:0.606:2	0/1:34,27:30:61:0.443:2
chr4	24521883	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,17:32:53:0.321:2	./.	./.	./.
chr4	24550580	rs33972724	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,23:31:64:0.359:2
chr4	24801315	rs2536512	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	0/1:4,4:25:8:0.500:2	0/1:1,11:28:12:0.917:2	./.	./.	0/1:0,2:29:2:1.00:2	./.
chr4	24801949	rs2695232	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,22:32:56:0.393:2	0/1:16,9:32:25:0.360:2	./.	0/1:0,44:32:44:1.00:2	0/1:46,33:31:79:0.418:2	0/1:46,27:31:73:0.370:2	0/1:3,61:31:64:0.953:2	0/1:34,34:31:68:0.500:2	0/1:0,47:33:47:1.00:2	0/1:0,30:32:30:1.00:2	0/1:23,21:32:44:0.477:2
chr4	24801976	rs2855262	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,32:32:75:0.432:2	0/1:18,15:31:33:0.455:2	./.	0/1:0,57:33:57:1.00:2	0/1:60,42:33:102:0.412:2	0/1:55,39:32:94:0.415:2	0/1:2,96:33:98:0.980:2	0/1:46,50:32:96:0.521:2	0/1:28,38:33:66:0.576:2	0/1:1,35:33:36:0.972:2	0/1:30,31:33:61:0.508:2
chr4	24802323	rs800448	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,9:31:9:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,2:29:2:1.00:2	0/1:0,19:29:19:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,11:28:11:1.00:2	0/1:0,16:31:16:1.00:2
chr4	24810040	rs78457808	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,7:32:9:0.778:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	24836619	rs16876194	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,6:31:14:0.429:2	0/1:46,33:31:79:0.418:2	./.	./.	./.	./.	./.	./.	./.
chr4	24854766	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,21:32:60:0.350:2	0/1:20,5:32:25:0.200:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	25005193	rs2232028	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:28:3:1.00:2	0/1:30,27:32:57:0.474:2	0/1:17,15:31:32:0.469:2	0/1:29,25:31:54:0.463:2	0/1:20,11:32:31:0.355:2	0/1:38,20:32:58:0.345:2	0/1:32,17:33:49:0.347:2	0/1:20,12:32:32:0.375:2	0/1:38,39:33:77:0.506:2
chr4	25005356	rs2232027	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,26:31:41:0.634:2	./.
chr4	25005685	rs376488943	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,70:32:148:0.473:2	./.	./.
chr4	25032135	rs74901868	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,29:31:56:0.518:2	./.	./.	./.	0/1:11,12:32:23:0.522:2	0/1:12,7:33:19:0.368:2
chr4	25125703	rs2302566	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,69:33:177:0.390:2
chr4	25146641	rs150309842	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:30:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	25156725	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,4:32:69:0.058:2	./.	./.	./.	./.	./.	./.	./.
chr4	25235801	rs10021593	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:30:7:0.429:2
chr4	25236017	rs313549	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.
chr4	25253995	rs313567	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:33:64:1.00:2	0/1:0,47:33:47:1.00:2	0/1:0,7:32:7:1.00:2	0/1:1,85:33:86:0.988:2	0/1:31,27:32:58:0.466:2	0/1:48,37:32:85:0.435:2	0/1:27,30:33:57:0.526:2	0/1:0,91:32:91:1.00:2	0/1:41,50:33:92:0.549:2	0/1:36,39:33:75:0.520:2	0/1:0,99:33:99:1.00:2
chr4	25258260	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,3:34:68:0.044:2	./.
chr4	25347205	rs61746661	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,12:29:18:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	25363901	rs315675	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:32:75:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,102:31:102:1.00:2	0/1:36,40:31:76:0.526:2	0/1:37,68:31:105:0.648:2	0/1:2,82:31:84:0.976:2	0/1:0,83:31:83:1.00:2	0/1:0,114:32:114:1.00:2	0/1:0,87:32:87:1.00:2	0/1:41,64:31:105:0.610:2
chr4	25370655	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,6:32:52:0.115:2	./.	./.
chr4	25395513	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:34:122:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	25398292	rs34015658	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,6:22:78:0.077:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,12:16:107:0.112:2
chr4	25408516	rs3214034	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,12:31:29:0.414:2	./.	./.	0/1:7,14:32:21:0.667:2	0/1:17,14:32:31:0.452:2	./.	0/1:13,17:32:30:0.567:2	./.
chr4	25408838	rs34811474	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,8:32:19:0.421:2	./.	./.	./.	./.	./.	0/1:16,7:33:23:0.304:2	./.
chr4	25417109	rs3214035	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,37:32:98:0.378:2	./.	./.	./.
chr4	25419283	rs9174	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,141:30:141:1.00:2	0/1:2,94:30:96:0.979:2	0/1:13,12:29:25:0.480:2	0/1:101,85:31:186:0.457:2	./.	./.	0/1:91,84:30:175:0.480:2	0/1:87,81:30:168:0.482:2	0/1:97,93:31:190:0.489:2	0/1:107,72:30:179:0.402:2	./.
chr4	25667757	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:31:60:0.067:2	./.	./.
chr4	25677969	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,81:27:168:0.482:2	./.	./.	./.
chr4	25678199	rs6448389	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,11:28:11:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,4:27:4:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,22:32:22:1.00:2	0/1:15,9:31:24:0.375:2	0/1:0,14:29:14:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,16:31:16:1.00:2	0/1:11,7:31:18:0.389:2	0/1:13,7:31:20:0.350:2
chr4	25759312	rs34282052	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,24:31:36:0.667:2	./.	./.	./.	./.	0/1:100,92:31:192:0.479:2	./.	./.	./.
chr4	25769236	rs146637686	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,6:32:17:0.353:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	25806319	rs34954596	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,5:32:14:0.357:2	./.	./.	./.	./.	./.	./.	./.	0/1:78,79:33:157:0.503:2
chr4	25823624	rs7676030	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,18:32:37:0.486:2	0/1:23,17:32:40:0.425:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,29:32:79:0.367:2
chr4	25849448	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:34:168:0.024:2	./.	./.
chr4	26407878	rs3113014	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,64:30:117:0.547:2	./.
chr4	26417136	rs2270226	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:5,165:30:170:0.971:2	0/1:0,82:29:82:1.00:2	./.	./.	0/1:65,61:29:126:0.484:2	./.	0/1:4,113:30:117:0.966:2	0/1:99,93:30:192:0.484:2	0/1:103,81:31:185:0.440:2	0/1:118,67:29:185:0.362:2	0/1:1,167:29:168:0.994:2
chr4	26422219	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:33:198:0.025:2	./.	./.	./.	./.
chr4	26422245	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,5:32:200:0.025:2	./.	./.	./.	./.
chr4	26483462	rs200830872	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,67:28:131:0.511:2	./.	./.	./.	./.	./.
chr4	26585881	rs4692549	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,23:31:58:0.397:2	0/1:32,30:31:62:0.484:2	./.	0/1:49,29:31:78:0.372:2	0/1:51,32:31:83:0.386:2	0/1:27,22:32:49:0.449:2	./.
chr4	26616004	rs76113874	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,7:33:15:0.467:2
chr4	26673761	rs9997999	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,10:32:10:1.00:2	0/1:0,7:31:7:1.00:2	./.	0/1:1,8:30:9:0.889:2	0/1:0,9:30:9:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,13:31:13:1.00:2
chr4	26673787	rs7691219	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,27:34:27:1.00:2	0/1:0,15:33:15:1.00:2	./.	0/1:0,27:32:27:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,20:34:20:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,31:34:31:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,49:33:49:1.00:2
chr4	26719569	rs34600164	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,32:33:58:0.561:2
chr4	27004011	rs10028164	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,33:33:33:1.00:2	0/1:0,10:34:10:1.00:2	./.	0/1:0,45:33:45:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,22:33:22:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,39:33:39:1.00:2
chr4	27019359	rs113180595	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,75:31:169:0.444:2	./.	./.	0/1:77,87:32:164:0.530:2	./.	./.	./.
chr4	30725449	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:32:45:0.089:2	./.	./.	./.	./.
chr4	30725696	rs1047012	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,55:31:125:0.440:2	./.	./.	./.	./.	./.	./.	./.
chr4	30725987	rs977931	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,35:31:64:0.547:2	./.	./.	./.	./.	./.	./.	./.
chr4	31144115	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:92,4:30:96:0.042:2	./.	./.	./.	./.	./.	./.
chr4	36069805	rs7657166	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,32:32:61:0.525:2	0/1:22,14:33:36:0.389:2	0/1:0,7:32:7:1.00:2	0/1:27,60:33:87:0.690:2	0/1:24,29:32:53:0.547:2	0/1:34,38:31:72:0.528:2	./.	./.	./.	0/1:21,30:33:51:0.588:2	./.
chr4	36081819	rs6823336	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,26:32:106:0.245:2	./.	./.	./.
chr4	36081878	rs4833069	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,99:32:99:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,126:31:126:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,129:32:129:1.00:2	0/1:0,122:33:122:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,144:32:144:1.00:2
chr4	36152584	rs13148785	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,25:32:70:0.357:2	0/1:8,11:32:19:0.579:2	./.	./.	./.	./.	./.	./.	0/1:47,37:33:84:0.440:2	./.	./.
chr4	36195205	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,4:31:93:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr4	36230761	rs34482185	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,21:33:78:0.269:2	./.	./.	./.	./.
chr4	36292018	rs1995319	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:31:35:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,69:31:69:1.00:2	0/1:1,48:31:49:0.980:2	0/1:0,61:32:61:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,72:31:72:1.00:2
chr4	36310049	rs12507599	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,17:32:33:0.515:2	./.	./.	0/1:15,20:32:35:0.571:2	./.
chr4	36317965	rs60640167	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,20:33:54:0.370:2	./.
chr4	36317970	rs9995922	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,17:32:42:0.405:2	0/1:11,9:32:20:0.450:2	0/1:0,7:33:7:1.00:2	0/1:0,52:32:52:1.00:2	./.	0/1:33,18:32:51:0.353:2	0/1:12,12:30:24:0.500:2	0/1:22,24:33:46:0.522:2	0/1:0,67:33:67:1.00:2	./.	./.
chr4	36340753	rs9654132	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,17:31:36:0.472:2	./.	./.	./.	./.	./.	./.
chr4	36340812	rs17460427	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,9:30:40:0.225:2	./.	./.	./.	./.	./.	./.
chr4	37327583	rs73130327	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,25:33:53:0.472:2	./.	./.
chr4	37435524	rs17604216	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:31:16:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	37445315	rs4634233	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:27,31:31:58:0.534:2	0/1:13,10:32:23:0.435:2	0/1:9,3:31:12:0.250:2	./.	./.	./.	./.	0/1:43,32:31:75:0.427:2	./.	0/1:26,23:31:49:0.469:2	./.
chr4	37445587	rs78505176	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,66:32:173:0.382:2	0/1:102,75:32:177:0.424:2	./.	./.	0/1:79,84:33:163:0.515:2
chr4	37445826	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,4:33:104:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr4	37445885	rs11724784	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:36,30:33:67:0.455:2	0/1:15,11:33:26:0.423:2	./.	./.	./.	./.	0/1:1,47:33:48:0.979:2	0/1:54,36:32:90:0.400:2	0/1:40,49:34:89:0.551:2	./.	0/1:42,34:33:76:0.447:2
chr4	37445941	rs139020189	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,13:28:27:0.481:2	0/1:20,26:29:46:0.565:2	./.	./.	./.
chr4	37446874	rs76049455	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,92:32:194:0.474:2	0/1:103,89:31:192:0.464:2	./.	./.	0/1:92,90:32:182:0.495:2
chr4	37447621	rs141690387	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,25:32:51:0.490:2	0/1:40,39:32:79:0.494:2	./.	./.	./.
chr4	37448299	rs17422084	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,46:31:113:0.407:2	0/1:50,51:31:101:0.505:2	./.	0/1:60,45:33:105:0.429:2	0/1:70,58:32:128:0.453:2
chr4	37592128	rs2973275	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:31,23:31:54:0.426:2	0/1:26,16:30:42:0.381:2	./.	./.	0/1:29,24:30:54:0.453:2	./.	./.	./.	./.	./.	0/1:31,41:32:72:0.569:2
chr4	37592472	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,82:31:170:0.482:2	./.	./.	./.	./.	./.	./.	./.
chr4	37836302	rs3752683	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,8:33:16:0.500:2	0/1:90,83:33:173:0.480:2	./.	0/1:0,164:33:164:1.00:2	./.	0/1:103,81:32:184:0.440:2	./.	./.	./.
chr4	37848563	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:31:13:0.308:2	./.	./.	./.	./.	./.	./.	./.
chr4	37857299	rs150524340	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,63:31:158:0.399:2	./.	./.	./.
chr4	37857342	rs11554509	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,6:34:11:0.545:2	0/1:62,44:33:106:0.415:2	./.	0/1:55,51:33:106:0.481:2	./.	0/1:102,49:33:151:0.325:2	./.	./.	./.
chr4	37903756	rs2279027	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,109:33:109:1.00:2	0/1:0,71:32:71:1.00:2	./.	0/1:1,165:33:166:0.994:2	./.	0/1:94,89:32:183:0.486:2	0/1:91,105:32:196:0.536:2	0/1:4,192:33:196:0.980:2	0/1:0,159:33:159:1.00:2	./.	0/1:66,63:33:129:0.488:2
chr4	37904082	rs2279026	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:40,22:28:62:0.355:2	0/1:28,15:28:43:0.349:2	./.	0/1:35,34:28:69:0.493:2	./.	./.	./.	./.	0/1:37,14:27:51:0.275:2	./.	0/1:46,31:27:77:0.403:2
chr4	37904089	rs35859249	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:40,22:33:62:0.355:2	0/1:27,14:32:41:0.341:2	./.	0/1:34,29:33:63:0.460:2	./.	./.	./.	./.	0/1:34,13:34:47:0.277:2	./.	./.
chr4	37953631	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:34:117:0.034:2	./.	./.	./.
chr4	37962133	rs2290740	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:64,30:31:94:0.319:2	0/1:41,23:32:64:0.359:2	./.	0/1:80,60:31:140:0.429:2	./.	0/1:61,61:30:122:0.500:2	./.	0/1:99,59:31:158:0.373:2	./.	0/1:62,47:31:109:0.431:2	0/1:88,75:32:163:0.460:2
chr4	37962186	rs6811863	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,27:32:88:0.307:2	0/1:41,18:33:59:0.305:2	0/1:9,5:32:14:0.357:2	0/1:2,135:32:137:0.985:2	0/1:2,133:32:135:0.985:2	0/1:0,114:32:114:1.00:2	./.	0/1:85,63:32:148:0.426:2	0/1:91,77:33:168:0.458:2	0/1:0,116:31:116:1.00:2	0/1:0,142:32:142:1.00:2
chr4	37962188	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,85:33:163:0.521:2	./.	./.
chr4	38016314	rs377732925	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,17:30:27:0.630:2	./.	./.	./.	./.	./.
chr4	38016372	rs61731587	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.
chr4	38016395	rs10501	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,6:31:13:0.462:2	./.	./.	0/1:0,12:31:12:1.00:2	0/1:9,6:31:15:0.400:2	0/1:1,5:30:6:0.833:2	./.	0/1:0,8:31:8:1.00:2	0/1:0,7:31:7:1.00:2	0/1:2,4:31:6:0.667:2	./.
chr4	38023302	rs34119528	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,54:30:54:1.00:2	0/1:18,14:31:32:0.438:2	./.	./.	./.	./.	./.	./.
chr4	38029455	rs376905847	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:33:127:0.031:2	./.	./.
chr4	38054737	rs58983546	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,53:33:116:0.457:2	0/1:22,24:33:46:0.522:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	38097704	rs149645940	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,51:29:100:0.510:2
chr4	38119769	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,24:29:75:0.320:2	./.	./.	./.	./.	./.
chr4	38134442	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,8:20:42:0.190:2	./.	./.	./.	./.	./.	./.	./.
chr4	38138856	rs13110318	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,47:32:90:0.522:2	0/1:30,28:32:58:0.483:2	./.
chr4	38138916	rs145834587	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,9:32:10:0.900:2	./.	./.	./.	./.	./.
chr4	38774785	rs10776482	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,50:33:51:0.980:2	0/1:0,19:33:19:1.00:2	./.	0/1:1,41:33:42:0.976:2	./.	./.	./.	./.	./.	0/1:16,18:34:34:0.529:2	./.
chr4	38774889	rs4129009	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,82:33:82:1.00:2	0/1:1,47:32:48:0.979:2	./.	0/1:0,105:33:105:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr4	38775040	rs10776483	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,34:33:34:1.00:2	0/1:0,10:31:10:1.00:2	./.	0/1:1,21:33:22:0.955:2	./.	./.	./.	./.	./.	0/1:13,14:32:27:0.519:2	./.
chr4	38775639	rs11466658	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:33:12:0.250:2	./.	0/1:28,18:32:46:0.391:2	./.	./.	./.	0/1:27,29:34:56:0.518:2	./.	./.
chr4	38775794	rs11466657	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,27:32:59:0.458:2	./.	./.	./.	./.	./.	./.	./.
chr4	38776107	rs11096955	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,27:32:27:1.00:2	0/1:1,2:35:3:0.667:2	0/1:0,43:32:43:1.00:2	0/1:27,16:32:43:0.372:2	./.	0/1:17,16:32:33:0.485:2	0/1:24,27:33:51:0.529:2	0/1:25,39:34:64:0.609:2	0/1:0,35:33:35:1.00:2	0/1:39,35:34:74:0.473:2
chr4	38776180	rs11096956	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,65:31:67:0.985:2	0/1:0,42:32:42:1.00:2	./.	0/1:3,61:31:64:0.953:2	./.	./.	./.	./.	./.	0/1:40,14:32:54:0.259:2	./.
chr4	38776235	rs11466653	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,26:30:69:0.377:2	./.
chr4	38776303	rs11466652	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:34:3:0.667:2	./.	0/1:22,24:31:46:0.522:2	./.	0/1:33,26:32:59:0.441:2	0/1:58,57:32:115:0.496:2	0/1:35,55:32:90:0.611:2	0/1:16,36:31:52:0.692:2	0/1:57,46:32:103:0.447:2
chr4	38776320	rs11466651	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,16:30:54:0.296:2	./.
chr4	38776491	rs11096957	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,93:33:95:0.979:2	0/1:0,40:32:40:1.00:2	0/1:5,9:32:14:0.643:2	0/1:0,71:32:71:1.00:2	0/1:28,31:32:59:0.525:2	./.	0/1:29,11:32:40:0.275:2	0/1:46,40:32:86:0.465:2	0/1:48,56:32:104:0.538:2	0/1:0,49:33:49:1.00:2	0/1:55,52:31:107:0.486:2
chr4	38776725	rs11466649	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,5:33:11:0.455:2	./.
chr4	38777059	rs10856837	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,57:31:109:0.523:2	./.
chr4	38777173	rs10856838	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:31:11:0.545:2	./.	0/1:40,33:31:73:0.452:2	./.	0/1:38,33:30:71:0.465:2	0/1:43,40:31:83:0.482:2	0/1:38,40:31:78:0.513:2	0/1:1,66:31:67:0.985:2	0/1:34,37:30:71:0.521:2
chr4	38777236	rs10856839	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	0/1:14,15:31:29:0.517:2	./.	0/1:5,8:33:13:0.615:2	0/1:10,13:32:23:0.565:2	0/1:15,10:32:25:0.400:2	0/1:0,12:33:12:1.00:2	0/1:10,12:32:22:0.545:2
chr4	38798648	rs5743618	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,106:31:106:1.00:2	0/1:0,54:32:54:1.00:2	0/1:1,12:31:13:0.923:2	0/1:3,107:31:110:0.973:2	0/1:49,59:31:108:0.546:2	./.	0/1:53,60:32:113:0.531:2	./.	0/1:78,54:32:132:0.409:2	0/1:47,54:31:101:0.535:2	0/1:52,61:32:113:0.540:2
chr4	38798856	rs200506989	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:32:182:0.022:2	./.	./.	./.
chr4	38798935	rs5743614	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,126:33:153:0.824:2	0/1:24,82:32:106:0.774:2	0/1:20,7:32:27:0.259:2	0/1:39,99:32:138:0.717:2	0/1:81,42:32:123:0.341:2	./.	0/1:70,29:32:99:0.293:2	./.	0/1:99,50:33:149:0.336:2	./.	./.
chr4	38799539	rs3923647	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,9:32:23:0.391:2	./.	./.	./.	0/1:25,12:34:37:0.324:2	./.	./.
chr4	38799710	rs4833095	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:33:47:1.00:2	0/1:0,29:32:29:1.00:2	0/1:2,3:32:5:0.600:2	0/1:2,42:33:44:0.955:2	0/1:13,4:30:17:0.235:2	./.	0/1:16,12:33:28:0.429:2	./.	0/1:26,37:33:63:0.587:2	./.	./.
chr4	38800083	rs190177710	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,54:32:112:0.482:2	./.	./.	./.	./.	./.	./.	./.
chr4	38800339	rs5743610	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:31:7:0.714:2	./.	0/1:27,15:31:42:0.357:2	./.	./.	./.	0/1:49,24:33:73:0.329:2	./.	./.
chr4	38828828	rs5743820	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,46:32:110:0.418:2	./.	./.	./.	./.
chr4	38829026	rs114855575	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:32:112:0.036:2	./.
chr4	38829223	rs113018374	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:70,5:31:75:0.067:2	0/1:46,4:31:50:0.080:2	./.	0/1:83,11:29:94:0.117:2	0/1:86,4:33:90:0.044:2	./.	0/1:75,4:31:79:0.051:2	./.	./.	./.	./.
chr4	38829320	rs75244616	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:105,9:31:114:0.079:2	./.	./.	0/1:157,11:30:168:0.065:2	0/1:135,8:31:143:0.056:2	./.	0/1:170,9:32:180:0.050:2	./.	0/1:148,8:32:156:0.051:2	./.	./.
chr4	38829562	rs376796946	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:124,32:32:156:0.205:2	0/1:77,10:33:87:0.115:2	./.	0/1:110,29:32:139:0.209:2	0/1:87,16:32:103:0.155:2	./.	0/1:113,13:32:126:0.103:2	./.	0/1:151,21:31:173:0.122:2	./.	./.
chr4	38829832	rs3775073	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,2:34:5:0.400:2	./.	0/1:23,25:31:48:0.521:2	./.	0/1:32,40:32:72:0.556:2	./.	0/1:36,37:33:73:0.507:2	./.	./.
chr4	38830012	rs3821985	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:30:5:0.600:2	./.	0/1:21,21:31:42:0.500:2	./.	0/1:24,20:31:44:0.455:2	./.	0/1:33,23:30:56:0.411:2	./.	./.
chr4	38830350	rs5743810	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:32:36:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,3:31:3:1.00:2	0/1:1,24:33:25:0.960:2	0/1:7,8:33:15:0.533:2	0/1:16,17:33:33:0.515:2	0/1:10,18:33:28:0.643:2	./.	0/1:14,16:32:30:0.533:2	0/1:6,10:33:16:0.625:2	0/1:19,23:33:42:0.548:2
chr4	38879727	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:34:108:0.037:2
chr4	38916631	rs4261994	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,30:28:56:0.536:2	./.	./.	./.	./.
chr4	38937372	rs2271031	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,44:32:93:0.473:2	0/1:32,32:32:64:0.500:2	0/1:0,5:32:5:1.00:2	0/1:62,70:32:132:0.530:2	0/1:1,64:32:65:0.985:2	./.	0/1:32,29:32:61:0.475:2	0/1:51,62:33:113:0.549:2	0/1:0,164:33:164:1.00:2	0/1:56,50:33:106:0.472:2	0/1:80,79:33:159:0.497:2
chr4	38945169	rs1060582	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,67:30:155:0.432:2	./.	./.	./.	./.	./.	./.
chr4	38972693	rs148909241	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,40:33:64:0.625:2	./.
chr4	38995374	rs10212770	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,140:33:141:0.993:2	0/1:0,80:31:80:1.00:2	0/1:0,16:32:16:1.00:2	0/1:82,69:33:151:0.457:2	0/1:0,85:32:85:1.00:2	0/1:0,136:32:136:1.00:2	0/1:0,98:32:99:1.00:2	0/1:70,69:32:139:0.496:2	0/1:103,83:33:186:0.446:2	0/1:80,55:33:135:0.407:2	0/1:1,152:32:153:0.993:2
chr4	39000305	rs11542133	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,4:33:105:0.038:2	0/1:40,25:31:65:0.385:2	./.	./.	./.	./.	0/1:44,40:33:84:0.476:2	./.
chr4	39000476	rs146524602	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,25:33:50:0.500:2	./.	./.
chr4	39064162	rs2711941	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,155:33:156:0.994:2	0/1:0,93:32:93:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,151:32:151:1.00:2	0/1:62,57:32:119:0.479:2	0/1:0,177:31:177:1.00:2	0/1:0,104:32:105:1.00:2	0/1:1,162:32:163:0.994:2	0/1:116,83:33:200:0.417:2	0/1:76,74:32:150:0.493:2	0/1:96,98:33:194:0.505:2
chr4	39116911	rs3733276	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:75,40:30:115:0.348:2	0/1:28,26:30:54:0.481:2	0/1:0,9:28:9:1.00:2	0/1:0,94:30:94:1.00:2	0/1:42,51:30:93:0.548:2	0/1:59,51:30:110:0.464:2	0/1:39,41:29:80:0.513:2	0/1:68,66:29:134:0.493:2	0/1:75,61:30:136:0.449:2	0/1:53,34:29:87:0.391:2	0/1:66,61:29:127:0.480:2
chr4	39122697	rs3733275	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,52:32:100:0.520:2	0/1:24,21:31:45:0.467:2	0/1:0,6:32:6:1.00:2	0/1:0,78:32:78:1.00:2	0/1:24,27:31:51:0.529:2	0/1:48,44:32:92:0.478:2	0/1:23,18:32:41:0.439:2	0/1:47,27:32:74:0.365:2	0/1:55,41:33:96:0.427:2	0/1:30,24:33:54:0.444:2	0/1:48,42:32:90:0.467:2
chr4	39207318	rs17584431	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,46:30:111:0.414:2	./.	0/1:53,49:31:102:0.480:2	./.	0/1:56,53:32:109:0.486:2	0/1:49,57:30:106:0.538:2	./.
chr4	39216221	rs2167494	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,26:30:64:0.406:2	./.	0/1:2,34:31:36:0.944:2	0/1:46,9:29:55:0.164:2	0/1:54,29:31:84:0.349:2	0/1:50,22:31:72:0.306:2	0/1:80,45:31:125:0.360:2
chr4	39216240	rs75964850	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,20:31:78:0.263:2	./.	./.	./.
chr4	39226607	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:31:121:0.033:2	./.	./.	./.	./.
chr4	39236493	rs200133722	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,25:32:35:0.714:2	./.	./.	./.	./.	./.
chr4	39254859	rs192590599	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:30:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	39259190	rs11096987	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,35:32:65:0.538:2	./.	0/1:3,64:32:67:0.955:2	0/1:38,38:32:76:0.500:2	0/1:39,38:31:77:0.494:2	0/1:14,30:32:44:0.682:2	0/1:32,47:32:80:0.595:2
chr4	39267750	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.	./.	./.
chr4	39302029	rs2066786	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,27:28:68:0.397:2	0/1:16,21:28:37:0.568:2	0/1:0,13:29:13:1.00:2	0/1:49,35:29:84:0.417:2	0/1:44,31:28:75:0.413:2	0/1:27,35:29:62:0.565:2	./.	0/1:1,81:29:82:0.988:2	0/1:57,35:30:92:0.380:2	0/1:31,26:29:57:0.456:2	0/1:0,81:27:81:1.00:2
chr4	39303925	rs2066782	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,43:33:81:0.531:2	0/1:26,40:32:66:0.606:2	./.	./.	./.	0/1:45,49:32:94:0.521:2	./.	0/1:51,61:33:112:0.545:2	./.	./.	./.
chr4	39322149	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,35:30:68:0.515:2	./.	./.
chr4	39322163	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:29:87:0.046:2	./.	./.	./.	./.	./.
chr4	39408762	rs34905034	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,22:33:50:0.440:2	./.	./.	./.	./.
chr4	39409363	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:31:133:0.030:2	./.	./.	./.	./.
chr4	39448122	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:30:51:0.078:2	./.	./.	./.	./.
chr4	39448542	rs7685429	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,2:30:2:1.00:2	./.	./.	0/1:0,8:30:8:1.00:2	0/1:0,2:30:2:1.00:2	./.	./.	0/1:0,4:30:4:1.00:2	0/1:0,3:29:3:1.00:2	./.	./.
chr4	39450229	rs4975017	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,19:32:40:0.475:2	0/1:0,47:31:47:1.00:2	0/1:17,22:31:39:0.564:2	0/1:15,13:31:28:0.464:2	0/1:0,52:31:52:1.00:2	0/1:31,30:32:61:0.492:2	0/1:18,10:32:28:0.357:2	0/1:32,29:32:61:0.475:2
chr4	39450295	rs143809363	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,4:31:12:0.333:2	./.	./.	./.	./.	./.
chr4	39458051	rs2125313	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,120:32:120:1.00:2	0/1:0,76:32:76:1.00:2	0/1:5,11:31:16:0.688:2	0/1:1,117:32:118:0.992:2	0/1:1,74:32:75:0.987:2	0/1:69,47:33:116:0.405:2	0/1:46,42:32:88:0.477:2	0/1:4,143:32:147:0.973:2	0/1:1,135:32:136:0.993:2	0/1:54,70:32:124:0.565:2	0/1:93,72:32:165:0.436:2
chr4	39460797	rs2687959	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,6:32:9:0.667:2	./.	./.
chr4	39462418	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,4:29:72:0.056:2	./.	./.	./.	./.	./.	./.	./.
chr4	39463894	rs144299903	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,21:33:52:0.404:2	./.	./.	./.	./.	./.	./.	./.
chr4	39466779	rs35086467	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,90:32:199:0.452:2
chr4	39472842	rs2125314	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,4:33:17:0.235:2	0/1:50,37:31:87:0.425:2	0/1:2,86:31:88:0.977:2	0/1:49,42:32:91:0.462:2	0/1:55,29:32:84:0.345:2	0/1:0,83:32:84:1.00:2	0/1:0,91:33:91:1.00:2	0/1:31,37:32:68:0.544:2	0/1:60,49:32:109:0.450:2
chr4	39510264	rs1129052	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,14:33:14:1.00:2	./.	0/1:7,6:33:13:0.462:2	./.	./.	./.	0/1:9,3:33:12:0.250:2	./.
chr4	39512347	rs11544855	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,10:28:28:0.357:2	./.	./.	./.	0/1:84,55:30:140:0.396:2	0/1:107,76:30:183:0.415:2	./.	./.	0/1:103,86:30:190:0.455:2
chr4	39515736	rs10019532	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,68:29:70:0.971:2	./.	0/1:40,21:30:61:0.344:2	./.	./.	./.	0/1:22,34:29:56:0.607:2	./.
chr4	39851223	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:34:137:0.029:2	./.	./.	./.
chr4	39864991	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,4:32:73:0.055:2	./.	./.	./.	./.	./.	./.	./.
chr4	39875979	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:33:101:0.040:2	./.	./.
chr4	39891956	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:29:58:0.069:2
chr4	39921942	rs28449663	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,124:33:125:0.992:2	0/1:0,86:33:86:1.00:2	0/1:9,10:33:19:0.526:2	0/1:99,67:33:166:0.404:2	0/1:76,48:32:124:0.387:2	./.	0/1:3,108:32:111:0.973:2	0/1:1,166:32:167:0.994:2	0/1:94,83:33:177:0.469:2	0/1:69,76:32:145:0.524:2	./.
chr4	40103767	rs17511668	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,18:31:40:0.450:2	0/1:32,39:32:71:0.549:2	./.	0/1:45,22:32:67:0.328:2
chr4	40103817	rs61748746	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,19:31:39:0.487:2	0/1:33,22:31:55:0.400:2	./.	./.	./.	./.	./.
chr4	40119501	rs1128372	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,30:30:67:0.448:2	0/1:37,39:31:76:0.513:2	./.	0/1:47,40:30:87:0.460:2
chr4	40121562	rs794001	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:33:34:1.00:2	0/1:1,23:32:24:0.958:2	0/1:0,6:32:6:1.00:2	0/1:20,27:31:47:0.574:2	0/1:0,16:32:16:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,44:33:44:1.00:2	0/1:20,12:32:32:0.375:2	0/1:1,45:33:46:0.978:2
chr4	40123790	rs61748749	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,26:31:54:0.481:2	0/1:61,35:32:96:0.365:2	./.	./.	./.	./.	./.
chr4	40138676	rs2271395	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,38:33:96:0.396:2	./.	./.	./.	./.	./.	./.	./.
chr4	40154465	rs113404449	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,52:32:127:0.409:2	./.	./.	./.	./.
chr4	40155809	rs376745415	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,16:31:37:0.432:2	0/1:10,15:31:25:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	40245990	rs1053509	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,17:31:24:0.708:2	0/1:8,14:31:22:0.636:2	./.	0/1:2,60:32:62:0.968:2	0/1:0,34:31:34:1.00:2	0/1:19,14:32:33:0.424:2	0/1:0,27:32:27:1.00:2	0/1:26,29:32:55:0.527:2	0/1:0,41:33:41:1.00:2	0/1:0,26:32:26:1.00:2	0/1:34,38:32:72:0.528:2
chr4	40337523	rs56241474	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,67:31:154:0.435:2	0/1:65,29:32:94:0.309:2	0/1:11,6:30:17:0.353:2	0/1:0,185:31:186:1.00:2	0/1:108,88:31:196:0.449:2	0/1:107,84:31:191:0.440:2	0/1:5,183:31:188:0.973:2	./.	0/1:2,190:32:192:0.990:2	./.	./.
chr4	40337566	rs10015231	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,63:32:170:0.371:2	./.
chr4	40337908	rs10022491	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,45:33:110:0.409:2	0/1:23,38:32:61:0.623:2	0/1:14,12:32:26:0.462:2	0/1:0,100:32:100:1.00:2	0/1:45,39:31:84:0.464:2	0/1:57,54:32:111:0.486:2	0/1:3,65:33:68:0.956:2	0/1:74,76:32:150:0.507:2	0/1:0,138:33:138:1.00:2	0/1:57,63:32:120:0.525:2	./.
chr4	40337944	rs56159866	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,14:31:30:0.467:2	0/1:76,57:31:133:0.429:2	0/1:65,55:31:120:0.458:2	0/1:73,75:31:148:0.507:2	0/1:0,104:31:104:1.00:2	./.	0/1:3,163:32:166:0.982:2	./.	./.
chr4	40351355	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,55:32:124:0.444:2	0/1:40,33:32:73:0.452:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	40356422	rs10009228	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,89:32:90:0.989:2	0/1:0,43:32:43:1.00:2	0/1:0,4:33:4:1.00:2	0/1:1,79:32:80:0.988:2	0/1:0,73:32:73:1.00:2	0/1:2,73:32:75:0.973:2	0/1:1,84:32:85:0.988:2	0/1:0,99:33:99:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,77:33:77:1.00:2	0/1:1,72:33:73:0.986:2
chr4	40427990	rs2292039	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,45:32:104:0.433:2	./.	./.
chr4	40428010	rs278981	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,28:28:80:0.350:2	0/1:37,13:29:50:0.260:2	0/1:0,8:28:8:1.00:2	0/1:39,43:27:82:0.524:2	0/1:44,63:28:108:0.589:2	0/1:0,101:27:101:1.00:2	0/1:76,68:27:144:0.472:2	0/1:78,70:27:148:0.473:2	0/1:55,39:28:94:0.415:2	0/1:0,72:27:72:1.00:2	0/1:42,30:27:72:0.417:2
chr4	40428056	rs149047307	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,25:30:63:0.397:2	./.	./.	./.	./.	./.	./.	./.
chr4	40438576	rs2307046	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,56:33:111:0.505:2	0/1:49,29:31:78:0.372:2	0/1:0,18:34:18:1.00:2	0/1:56,52:33:108:0.481:2	0/1:0,110:33:110:1.00:2	0/1:0,125:33:125:1.00:2	0/1:55,65:32:120:0.542:2	0/1:1,159:33:160:0.994:2	0/1:0,119:34:119:1.00:2	0/1:1,100:33:101:0.990:2	0/1:0,135:32:135:1.00:2
chr4	40440215	rs2291580	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,15:31:34:0.441:2	0/1:19,14:32:33:0.424:2	0/1:0,7:32:7:1.00:2	0/1:27,17:33:44:0.386:2	0/1:0,56:31:56:1.00:2	0/1:0,49:32:49:1.00:2	0/1:24,23:30:47:0.489:2	0/1:0,72:32:72:1.00:2	0/1:24,20:31:44:0.455:2	0/1:0,42:32:42:1.00:2	0/1:0,24:32:24:1.00:2
chr4	40440590	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:33:173:0.023:2	./.	./.	./.	./.	./.
chr4	40440613	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:33:75:0.053:2	./.
chr4	40440854	rs1052153	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	0/1:1,2:31:3:0.667:2	0/1:0,3:31:3:1.00:2	./.	./.	./.
chr4	40752830	rs34487249	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,34:28:65:0.523:2	./.	./.
chr4	40778146	rs2465570	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:31:36:1.00:2	0/1:2,38:32:40:0.950:2	0/1:0,15:31:15:1.00:2	0/1:0,74:31:74:1.00:2	0/1:38,20:29:58:0.345:2	0/1:0,75:31:75:1.00:2	0/1:0,81:31:81:1.00:2	0/1:45,21:31:66:0.318:2	0/1:45,41:32:86:0.477:2	0/1:28,34:32:62:0.548:2	0/1:0,91:31:91:1.00:2
chr4	40778162	rs2437323	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:31:32:1.00:2	0/1:1,30:33:31:0.968:2	0/1:0,11:32:11:1.00:2	0/1:0,60:33:60:1.00:2	0/1:28,16:32:44:0.364:2	0/1:0,63:33:63:1.00:2	0/1:0,69:32:69:1.00:2	0/1:40,21:33:61:0.344:2	0/1:36,35:33:71:0.493:2	0/1:24,28:32:52:0.538:2	0/1:0,85:32:85:1.00:2
chr4	40810663	rs4861066	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,19:28:55:0.345:2	0/1:19,19:28:38:0.500:2	./.	0/1:45,27:28:72:0.375:2	0/1:41,43:29:84:0.512:2	./.	./.	./.	./.	./.	./.
chr4	40810747	rs2261167	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,61:30:62:0.984:2	0/1:0,37:30:37:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,86:30:87:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,72:30:72:1.00:2	0/1:1,94:30:95:0.989:2	0/1:0,107:30:107:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,82:29:82:1.00:2	0/1:0,85:30:85:1.00:2
chr4	40936713	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,3:38:98:0.031:2	./.
chr4	41015742	rs11942640	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,27:32:52:0.519:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	41015823	rs2292234	G	A,T	.	PASS	AC=6,2;AF=0.250,0.083;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0/1:30:124:0.492:2	0/1:30:100:0.420:2	./.	0/2:31:127:0.488:2	0/2:31:105:0.437:2	0/1:30:142:1.00:2	./.	0/1:30:145:0.448:2	0/1:31:140:0.457:2	./.	0/1:30:162:0.475:2
chr4	41015899	rs4861358	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:32:72:1.00:2	0/1:0,50:32:50:1.00:2	0/1:4,4:32:8:0.500:2	0/1:2,57:31:59:0.966:2	0/1:0,51:31:51:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,66:32:66:1.00:2	0/1:38,35:32:73:0.479:2	./.	0/1:0,84:32:84:1.00:2
chr4	41258970	rs11556271	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,13:31:27:0.481:2	./.
chr4	41258978	rs9321	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,13:31:30:0.433:2	./.
chr4	41259149	rs11556273	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,40:26:98:0.408:2	./.	./.	./.
chr4	41259162	rs11556272	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,31:29:74:0.419:2	./.	./.	./.
chr4	41259633	rs5030732	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:27:4:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr4	41526503	rs4266323	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,61:32:121:0.504:2	0/1:30,38:32:68:0.559:2	0/1:9,10:29:19:0.526:2	0/1:83,48:32:131:0.366:2	./.	0/1:89,47:32:136:0.346:2	0/1:64,46:32:110:0.418:2	0/1:70,61:32:131:0.466:2	./.	0/1:69,72:32:141:0.511:2	./.
chr4	41648683	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:31:150:0.027:2	./.	./.	./.	./.	./.
chr4	41673604	rs11734372	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,38:30:92:0.413:2	0/1:33,22:29:55:0.400:2	0/1:0,19:29:19:1.00:2	0/1:0,123:30:123:1.00:2	0/1:48,27:29:75:0.360:2	0/1:0,115:30:115:1.00:2	0/1:28,28:29:56:0.500:2	0/1:2,112:29:114:0.982:2	0/1:2,119:30:121:0.983:2	0/1:0,103:30:103:1.00:2	./.
chr4	41678407	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:33:169:0.024:2	./.	./.
chr4	41686520	rs61745963	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,18:31:30:0.600:2	./.	./.	./.	./.
chr4	41687797	rs61733763	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,35:31:72:0.486:2	./.
chr4	41691601	rs1061597	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:32:12:0.250:2	./.	./.	0/1:96,73:30:169:0.432:2	./.	0/1:117,81:30:198:0.409:2	0/1:91,103:31:194:0.531:2	./.	./.
chr4	41748217	rs17885216	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,12:28:37:0.324:2	./.	./.	./.	./.	./.
chr4	41984118	rs2660320	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,110:31:110:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,15:31:15:1.00:2	./.	0/1:0,174:31:174:1.00:2	./.	0/1:0,158:32:158:1.00:2	0/1:98,74:31:172:0.430:2	0/1:0,142:32:142:1.00:2	0/1:78,54:31:132:0.409:2	0/1:0,109:31:110:1.00:2
chr4	41984159	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:28:83:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	41985101	rs2660332	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,53:33:54:0.981:2	0/1:0,41:32:41:1.00:2	0/1:0,13:32:13:1.00:2	./.	0/1:1,95:31:96:0.990:2	./.	0/1:0,87:31:87:1.00:2	0/1:57,47:31:104:0.452:2	0/1:3,98:33:101:0.970:2	0/1:49,33:32:82:0.402:2	0/1:0,95:32:95:1.00:2
chr4	41985478	rs2660334	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:31:40:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,46:29:46:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,56:30:56:1.00:2
chr4	41985685	rs75483306	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,33:31:104:0.317:2	./.	./.	./.	./.	./.
chr4	41985686	rs116342028	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,33:32:104:0.317:2	./.	./.	./.	./.	./.
chr4	41985689	rs2660335	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,92:32:92:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,15:30:15:1.00:2	./.	0/1:0,60:32:60:1.00:2	./.	0/1:0,68:31:68:1.00:2	0/1:75,65:32:140:0.464:2	0/1:4,109:32:113:0.965:2	0/1:59,54:31:113:0.478:2	0/1:0,150:32:150:1.00:2
chr4	41986857	rs2581439	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,126:32:126:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,26:31:26:1.00:2	./.	0/1:0,61:32:61:1.00:2	./.	0/1:0,79:32:79:1.00:2	0/1:73,37:32:110:0.336:2	0/1:2,112:32:114:0.982:2	0/1:56,43:33:99:0.434:2	0/1:0,161:32:161:1.00:2
chr4	41987139	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,4:32:26:0.154:2	./.	./.	./.	./.	./.	./.
chr4	41987892	rs2581438	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,68:32:68:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,9:32:9:1.00:2	./.	0/1:0,43:31:43:1.00:2	0/1:35,28:30:63:0.444:2	0/1:0,47:31:47:1.00:2	0/1:35,26:32:61:0.426:2	0/1:0,88:32:88:1.00:2	0/1:48,32:32:80:0.400:2	0/1:2,61:32:63:0.968:2
chr4	41988338	rs73810449	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,80:31:166:0.482:2	./.	./.	./.	./.	./.
chr4	41992677	rs2581434	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,57:30:57:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,17:30:17:1.00:2	./.	0/1:1,34:31:35:0.971:2	0/1:31,17:30:48:0.354:2	0/1:0,26:30:26:1.00:2	0/1:25,20:28:45:0.444:2	0/1:0,57:30:57:1.00:2	0/1:11,11:30:22:0.500:2	0/1:1,11:29:12:0.917:2
chr4	42003671	rs1047626	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,128:28:128:1.00:2	0/1:0,74:28:74:1.00:2	0/1:0,14:28:14:1.00:2	./.	0/1:0,68:28:68:1.00:2	./.	0/1:0,108:29:108:1.00:2	0/1:81,89:28:170:0.524:2	0/1:0,148:29:148:1.00:2	0/1:57,88:29:145:0.607:2	0/1:2,170:28:172:0.988:2
chr4	42020142	rs2581423	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,99:30:99:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,73:30:73:1.00:2	0/1:1,47:31:48:0.979:2	0/1:0,83:29:83:1.00:2	0/1:1,51:30:52:0.981:2	0/1:0,79:30:79:1.00:2	0/1:0,90:30:90:1.00:2	0/1:0,72:30:72:1.00:2	0/1:0,124:30:125:1.00:2
chr4	42022464	rs15857	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,67:32:67:1.00:2	0/1:0,31:31:31:1.00:2	0/1:1,8:32:9:0.889:2	./.	0/1:0,27:32:27:1.00:2	./.	0/1:0,36:32:36:1.00:2	0/1:66,20:31:86:0.233:2	0/1:1,77:32:78:0.987:2	0/1:47,18:32:65:0.277:2	0/1:0,100:32:100:1.00:2
chr4	42065097	rs181235146	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,49:30:146:0.336:2	./.	./.	./.	./.	./.	./.
chr4	42400112	rs11733156	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:31:11:0.364:2	0/1:0,17:31:17:1.00:2	./.	./.	0/1:2,3:32:5:0.600:2	0/1:4,9:33:13:0.692:2	./.	./.
chr4	42446616	rs144342471	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:32:159:0.025:2	./.	./.	./.	./.	./.
chr4	42457545	rs61735691	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,37:32:98:0.378:2	0/1:34,21:32:55:0.382:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	42551048	rs34999127	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,81:31:162:0.500:2
chr4	42576655	rs138169536	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,55:29:122:0.451:2	./.
chr4	42590321	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,5:27:159:0.031:2	./.
chr4	42895308	rs78136490	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,37:32:89:0.416:2	0/1:50,55:32:105:0.524:2	./.	0/1:44,51:31:95:0.537:2	./.	./.	./.	./.
chr4	44176960	rs13143747	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:84,74:30:158:0.468:2	0/1:46,33:30:79:0.418:2	./.	./.	0/1:52,43:29:95:0.453:2	./.	./.	./.	0/1:79,62:31:141:0.440:2	./.	./.
chr4	44626641	rs60959366	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,14:34:34:0.412:2	0/1:1,179:33:181:0.994:2	./.	./.	0/1:109,65:33:174:0.374:2	./.	0/1:99,87:34:186:0.468:2	0/1:107,71:33:179:0.399:2	0/1:117,71:32:188:0.378:2
chr4	44652030	rs2348353	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,25:28:65:0.385:2	./.	./.	0/1:42,26:30:69:0.382:2	./.
chr4	44680726	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,3:30:23:0.130:2	./.	./.	./.
chr4	44682465	rs6447368	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,61:33:61:1.00:2	0/1:0,38:32:38:1.00:2	./.	./.	0/1:2,41:31:43:0.953:2	0/1:4,74:32:78:0.949:2	0/1:36,21:31:57:0.368:2	0/1:0,66:32:66:1.00:2	0/1:63,44:34:107:0.411:2	0/1:70,31:33:101:0.307:2	0/1:67,62:34:129:0.481:2
chr4	44699484	rs6851576	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,63:32:65:0.969:2	0/1:0,35:32:35:1.00:2	0/1:2,8:33:10:0.800:2	./.	0/1:0,30:32:30:1.00:2	0/1:0,44:33:44:1.00:2	0/1:13,18:33:31:0.581:2	0/1:2,54:33:56:0.964:2	0/1:44,33:33:77:0.429:2	0/1:25,31:33:56:0.554:2	0/1:47,52:32:99:0.525:2
chr4	44713067	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,4:33:106:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr4	46060303	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:34:197:0.020:2	./.	./.
chr4	46086060	rs976156	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:98,82:30:180:0.456:2	0/1:81,57:29:138:0.413:2	0/1:12,11:29:23:0.478:2	0/1:0,166:30:166:1.00:2	./.	0/1:96,63:29:159:0.396:2	./.	0/1:89,87:29:176:0.494:2	0/1:82,80:30:162:0.494:2	0/1:78,83:30:161:0.516:2	0/1:0,133:29:133:1.00:2
chr4	46314593	rs279858	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,50:33:100:0.500:2	0/1:28,36:33:64:0.563:2	0/1:2,3:32:5:0.600:2	0/1:2,138:33:140:0.986:2	./.	0/1:48,54:32:102:0.529:2	./.	0/1:40,78:33:118:0.661:2	./.	0/1:40,60:33:100:0.600:2	0/1:70,76:33:146:0.521:2
chr4	46334702	rs279827	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,32:33:82:0.390:2	0/1:24,22:32:46:0.478:2	0/1:10,7:33:17:0.412:2	0/1:0,80:33:80:1.00:2	./.	0/1:41,54:32:95:0.568:2	./.	0/1:48,31:33:79:0.392:2	./.	0/1:34,36:33:70:0.514:2	0/1:67,40:33:107:0.374:2
chr4	46930432	rs188495956	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,46:32:115:0.400:2	./.	./.	./.	./.
chr4	46995366	rs2229940	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,78:31:80:0.975:2	0/1:0,45:32:45:1.00:2	./.	0/1:76,54:31:130:0.415:2	0/1:55,77:31:132:0.583:2	0/1:0,127:30:127:1.00:2	0/1:1,171:31:172:0.994:2	./.	./.	0/1:44,59:31:103:0.573:2	0/1:62,74:31:136:0.544:2
chr4	47034626	rs41309288	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:30:6:0.667:2	./.	0/1:30,23:28:53:0.434:2	./.	0/1:18,25:27:43:0.581:2	0/1:38,40:28:78:0.513:2	0/1:0,75:29:75:1.00:2	0/1:22,21:27:43:0.488:2	0/1:25,20:28:45:0.444:2
chr4	47322190	rs4482737	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,6:31:6:1.00:2	0/1:1,75:33:76:0.987:2	0/1:0,79:32:79:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,75:32:75:1.00:2	0/1:47,43:33:90:0.478:2	0/1:42,24:32:66:0.364:2	0/1:0,85:33:85:1.00:2
chr4	47322219	rs6284	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,24:32:89:0.273:2	0/1:53,25:31:78:0.321:2	./.	./.	./.
chr4	47408709	rs6289	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:55,58:28:113:0.513:2	0/1:33,32:28:65:0.492:2	./.	0/1:3,152:29:155:0.981:2	0/1:39,52:29:91:0.571:2	./.	0/1:73,57:29:130:0.438:2	0/1:64,57:28:121:0.471:2	0/1:63,79:29:142:0.556:2	0/1:45,49:29:94:0.521:2	./.
chr4	47408838	rs6290	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:79,86:32:165:0.521:2	0/1:55,43:32:98:0.439:2	0/1:15,17:33:32:0.531:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	47427873	rs41311286	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,7:33:24:0.292:2	./.	./.
chr4	47514685	rs33995001	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,9:31:17:0.529:2	0/1:59,60:30:119:0.504:2	0/1:0,103:31:103:1.00:2	0/1:1,88:30:89:0.989:2	0/1:5,88:31:93:0.946:2	0/1:3,95:31:98:0.969:2	0/1:65,51:32:116:0.440:2	0/1:0,78:32:78:1.00:2	./.
chr4	47525054	rs7683838	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:29:4:0.750:2	./.	0/1:1,60:30:62:0.984:2	./.	./.	0/1:28,21:30:49:0.429:2	0/1:28,35:32:63:0.556:2	0/1:32,16:30:48:0.333:2	./.
chr4	47538044	rs35012290	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,48:31:132:0.364:2	./.	./.	./.	./.
chr4	47560002	rs34208443	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:31:10:0.500:2	./.	0/1:0,88:31:88:1.00:2	./.	0/1:1,82:31:83:0.988:2	0/1:34,40:31:74:0.541:2	0/1:41,25:32:66:0.379:2	0/1:25,28:32:53:0.528:2	./.
chr4	47560015	rs34169638	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,35:33:69:0.507:2	./.	./.	./.	./.	./.
chr4	47560163	rs11729411	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,64:31:113:0.566:2	0/1:41,35:31:76:0.461:2	./.	./.	./.	0/1:97,79:30:176:0.449:2	./.	./.	0/1:74,88:31:162:0.543:2	./.	./.
chr4	47570863	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:31:73:0.055:2	./.	./.	./.	./.	./.
chr4	47578971	rs16851681	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,83:31:187:0.444:2	./.	0/1:78,62:31:140:0.443:2	./.	0/1:92,89:31:183:0.492:2	./.	0/1:67,67:32:134:0.500:2	./.
chr4	47584046	rs1058793	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,83:31:161:0.516:2	0/1:52,43:32:95:0.453:2	0/1:9,11:31:20:0.550:2	0/1:123,66:32:189:0.349:2	./.	./.	./.	0/1:179,4:33:183:0.022:2	./.	./.	0/1:84,99:32:183:0.541:2
chr4	47589203	rs1316874	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:80,72:31:153:0.474:2	0/1:51,43:32:94:0.457:2	0/1:9,8:31:17:0.471:2	0/1:54,69:31:123:0.561:2	./.	./.	./.	./.	./.	./.	./.
chr4	47593283	rs4145944	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,36:32:76:0.474:2	0/1:0,67:32:67:1.00:2	0/1:31,38:32:69:0.551:2	0/1:38,15:33:53:0.283:2	0/1:0,91:33:91:1.00:2	0/1:51,34:33:85:0.400:2	0/1:0,68:32:68:1.00:2	./.
chr4	47605505	rs61759670	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,44:32:85:0.518:2
chr4	47667064	rs11934749	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,25:30:58:0.431:2	0/1:16,18:29:34:0.529:2	./.	0/1:2,47:30:49:0.959:2	0/1:0,41:30:41:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,58:30:58:1.00:2	0/1:32,23:31:55:0.418:2	0/1:0,43:29:43:1.00:2	0/1:0,63:29:64:1.00:2
chr4	47682174	rs10517195	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,50:29:93:0.538:2	0/1:0,75:29:75:1.00:2	0/1:46,28:29:74:0.378:2	0/1:0,81:29:81:1.00:2	0/1:42,46:29:88:0.523:2	0/1:37,34:29:71:0.479:2	0/1:1,55:28:56:0.982:2	0/1:23,30:29:54:0.566:2
chr4	47839929	rs2289433	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:29:33:1.00:2	0/1:0,12:31:12:1.00:2	0/1:3,3:31:6:0.500:2	0/1:0,51:29:51:1.00:2	0/1:0,52:29:52:1.00:2	0/1:21,22:29:43:0.512:2	0/1:0,45:29:45:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,52:31:53:1.00:2	0/1:0,32:29:32:1.00:2	./.
chr4	47887513	rs78026876	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:153,10:17:164:0.061:2	./.	./.	./.	./.	./.	./.	./.
chr4	47887536	rs2053404	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,166:30:168:0.994:2	0/1:0,110:30:110:1.00:2	0/1:13,15:30:28:0.536:2	0/1:4,188:30:192:0.979:2	0/1:0,176:29:176:1.00:2	0/1:117,78:30:195:0.400:2	0/1:1,169:30:170:0.994:2	0/1:0,188:30:188:1.00:2	0/1:0,189:31:189:1.00:2	0/1:0,181:30:181:1.00:2	./.
chr4	47887946	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:33:164:0.024:2	./.	./.
chr4	47887991	rs6818556	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,161:33:162:0.994:2	0/1:0,104:32:104:1.00:2	0/1:12,5:33:17:0.294:2	0/1:0,148:32:148:1.00:2	0/1:0,130:32:130:1.00:2	0/1:100,83:32:183:0.454:2	0/1:1,127:32:128:0.992:2	0/1:2,131:32:133:0.985:2	0/1:2,148:33:150:0.987:2	0/1:1,113:33:114:0.991:2	./.
chr4	47900814	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,5:28:192:0.026:2	./.	./.	./.
chr4	47901088	rs34323060	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,38:32:95:0.400:2
chr4	47901476	rs12651301	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:70,53:33:123:0.431:2	0/1:32,16:33:48:0.333:2	0/1:14,7:33:21:0.333:2	./.	./.	0/1:79,64:33:143:0.448:2	./.	./.	./.	./.	./.
chr4	47938879	rs17573673	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,33:32:82:0.402:2	./.	./.	./.	./.
chr4	47939139	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:31:165:0.024:2	./.	./.	./.
chr4	47945455	rs6819506	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,6:31:6:1.00:2	0/1:0,4:32:4:1.00:2	./.	0/1:0,15:32:15:1.00:2	0/1:0,13:31:13:1.00:2	0/1:4,6:31:10:0.600:2	0/1:0,3:30:3:1.00:2	0/1:0,10:31:11:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,5:29:5:1.00:2	./.
chr4	48037926	rs13116684	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,19:29:34:0.559:2	./.	./.	./.	./.	./.	./.	./.	0/1:76,66:30:142:0.465:2
chr4	48069696	rs2230594	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,43:30:44:0.977:2	0/1:0,32:30:32:1.00:2	./.	0/1:2,46:30:48:0.958:2	0/1:1,29:30:30:0.967:2	0/1:38,26:29:64:0.406:2	0/1:2,52:30:54:0.963:2	0/1:0,63:30:63:1.00:2	0/1:0,61:29:61:1.00:2	0/1:0,51:29:51:1.00:2	0/1:35,26:28:61:0.426:2
chr4	48069725	rs9996535	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,30:32:31:0.968:2	0/1:0,22:32:22:1.00:2	./.	0/1:1,32:32:33:0.970:2	0/1:2,22:32:24:0.917:2	0/1:29,24:30:53:0.453:2	0/1:1,22:30:23:0.957:2	0/1:0,41:32:41:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,36:32:36:1.00:2	0/1:23,19:32:42:0.452:2
chr4	48076011	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,6:31:72:0.083:2	./.	./.
chr4	48115264	rs7658300	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,89:32:92:0.967:2	0/1:0,69:32:69:1.00:2	./.	0/1:0,115:32:115:1.00:2	0/1:1,105:31:106:0.991:2	0/1:45,51:31:96:0.531:2	0/1:4,88:31:92:0.957:2	0/1:6,118:32:124:0.952:2	0/1:1,135:32:136:0.993:2	0/1:0,108:32:108:1.00:2	0/1:87,62:32:149:0.416:2
chr4	48147309	rs17574371	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,34:33:58:0.586:2	0/1:13,19:30:32:0.594:2	./.	0/1:1,51:32:52:0.981:2	0/1:1,45:31:46:0.978:2	./.	0/1:1,67:33:68:0.985:2	0/1:40,18:33:58:0.310:2	0/1:0,79:33:79:1.00:2	0/1:0,55:31:55:1.00:2	0/1:38,40:32:78:0.513:2
chr4	48165710	rs200060189	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,36:33:79:0.462:2	0/1:28,18:32:46:0.391:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	48165757	rs16861083	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,18:31:45:0.400:2	./.	./.	./.	./.	./.
chr4	48170669	rs2243840	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,102:33:102:1.00:2	0/1:0,45:31:45:1.00:2	./.	0/1:0,106:33:106:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,51:32:51:1.00:2	0/1:1,93:32:94:0.989:2	0/1:0,119:33:119:1.00:2	0/1:0,48:33:48:1.00:2	0/1:46,66:31:112:0.589:2
chr4	48172266	rs2271173	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,30:30:80:0.375:2	0/1:24,28:31:52:0.538:2	./.	./.	./.	0/1:47,20:30:67:0.299:2	./.	0/1:36,19:30:55:0.345:2	./.	./.	./.
chr4	48172295	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:33:99:0.040:2	./.	./.	./.	./.	./.
chr4	48371970	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.
chr4	48493237	rs79858408	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,6:30:6:1.00:2	0/1:0,5:29:5:1.00:2	./.	./.
chr4	48502212	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:31:79:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	48514624	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:189,4:34:193:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr4	48555311	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:34:176:0.023:2	./.	./.
chr4	48559517	rs200163698	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:92,23:18:115:0.200:2	./.	./.	0/1:113,22:14:135:0.163:2	0/1:99,27:14:126:0.214:2	0/1:130,41:13:171:0.240:2	0/1:125,23:12:149:0.155:2	0/1:135,36:15:171:0.211:2	0/1:152,26:15:178:0.146:2	0/1:94,28:16:122:0.230:2	0/1:120,35:19:155:0.226:2
chr4	48582909	rs4695391	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:31:5:1.00:2	./.	0/1:41,29:31:70:0.414:2	0/1:48,38:31:87:0.442:2	0/1:45,31:31:76:0.408:2	0/1:52,40:31:92:0.435:2	0/1:0,91:32:91:1.00:2	0/1:0,70:31:71:1.00:2	0/1:47,38:30:85:0.447:2
chr4	48583490	rs145522900	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,67:31:126:0.532:2	./.	./.	./.	./.
chr4	48588742	rs34558821	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,24:31:24:1.00:2	0/1:1,11:31:12:0.917:2	./.	0/1:0,18:32:18:1.00:2	0/1:6,8:31:14:0.571:2	0/1:17,11:31:28:0.393:2	0/1:10,13:32:23:0.565:2	0/1:12,14:32:26:0.538:2	./.	./.	0/1:14,26:32:40:0.650:2
chr4	48625213	rs776579	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,12:32:12:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,23:31:23:1.00:2
chr4	48853855	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:31:89:0.045:2	./.	./.	./.	./.	./.
chr4	48988450	rs3747690	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,12:30:12:1.00:2	0/1:20,17:29:37:0.459:2	0/1:19,22:30:41:0.537:2	0/1:0,55:30:55:1.00:2	0/1:1,30:27:31:0.968:2	0/1:20,25:29:45:0.556:2	0/1:0,33:30:33:1.00:2	0/1:1,37:29:38:0.974:2	0/1:16,9:31:25:0.360:2
chr4	49000506	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:32:147:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	49063872	rs1051447	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:31:43:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,68:30:68:1.00:2	0/1:38,24:30:62:0.387:2	0/1:0,64:31:64:1.00:2	0/1:2,41:30:43:0.953:2	0/1:3,69:31:72:0.958:2	0/1:0,77:32:77:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,97:31:97:1.00:2
chr4	52740478	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,3:33:22:0.136:2	./.	./.	./.	./.
chr4	52752812	rs2271046	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,45:30:92:0.489:2	./.	./.	./.	./.	./.	./.
chr4	52860892	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,74:28:129:0.574:2	./.	./.	./.	./.	./.	./.	./.
chr4	52862252	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:26:58:0.069:2
chr4	52938169	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:31:91:0.044:2
chr4	52938243	rs3860707	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,14:32:14:1.00:2	0/1:53,46:32:99:0.465:2	0/1:1,94:31:95:0.989:2	0/1:75,44:33:119:0.370:2	0/1:0,104:33:104:1.00:2	0/1:81,52:32:133:0.391:2	0/1:1,81:33:82:0.988:2	0/1:1,86:33:88:0.989:2	0/1:73,53:32:126:0.421:2
chr4	53468032	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:31:155:0.026:2	./.	./.	./.	./.
chr4	53494181	rs61761593	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:191,6:28:197:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr4	53751932	rs2306600	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:133,57:31:190:0.300:2	./.	./.	./.	./.	./.	./.
chr4	53751979	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:171,4:31:176:0.023:2	./.	./.	./.	./.	./.	./.
chr4	54011526	rs7675987	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:84,70:29:154:0.455:2	0/1:44,41:29:85:0.482:2	0/1:8,7:29:15:0.467:2	0/1:83,83:30:166:0.500:2	0/1:2,132:29:134:0.985:2	./.	0/1:72,53:30:125:0.424:2	0/1:85,102:30:187:0.545:2	./.	./.	0/1:91,95:30:186:0.511:2
chr4	54011576	rs79628372	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:60,51:32:111:0.459:2	0/1:44,39:32:83:0.470:2	./.	./.	./.	./.	0/1:57,64:33:121:0.529:2	./.	./.	0/1:0,107:33:107:1.00:2	./.
chr4	54231475	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,4:31:106:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr4	54310281	rs11723755	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,20:33:40:0.500:2	0/1:19,10:31:29:0.345:2	0/1:0,7:32:7:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,39:32:39:1.00:2	./.	0/1:15,16:33:31:0.516:2	0/1:13,25:33:38:0.658:2	0/1:0,48:33:48:1.00:2	./.	0/1:1,62:33:63:0.984:2
chr4	54966667	rs3194383	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:24,25:30:49:0.510:2	0/1:20,12:31:32:0.375:2	0/1:4,7:31:11:0.636:2	./.	./.	0/1:36,32:31:68:0.471:2	0/1:0,30:31:30:1.00:2	./.	0/1:15,17:31:32:0.531:2	0/1:0,59:32:59:1.00:2	0/1:0,31:31:31:1.00:2
chr4	54966830	rs13144341	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,12:30:12:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,28:31:28:1.00:2
chr4	54966919	rs1132998	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:7,4:31:11:0.364:2	0/1:4,6:31:10:0.600:2	0/1:2,3:34:5:0.600:2	./.	0/1:39,3:32:42:0.071:2	0/1:16,8:31:24:0.333:2	0/1:0,25:31:25:1.00:2	0/1:30,3:32:33:0.091:2	0/1:10,12:32:22:0.545:2	0/1:0,13:31:13:1.00:2	0/1:0,16:31:16:1.00:2
chr4	55127365	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:30:114:0.035:2	./.	./.	./.	./.	./.
chr4	55130078	rs2229307	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,9:26:27:0.333:2	./.	./.	./.	./.	./.	0/1:17,11:29:28:0.393:2	./.
chr4	55133726	rs4358459	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,50:32:101:0.495:2	./.	./.	./.	./.	./.	0/1:35,33:31:68:0.485:2	./.
chr4	55139771	rs35597368	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,19:31:52:0.365:2	./.	./.	./.	./.	./.	0/1:18,20:33:38:0.526:2	./.
chr4	55141055	rs1873778	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:30:56:1.00:2	0/1:0,44:30:44:1.00:2	0/1:1,5:31:6:0.833:2	0/1:0,68:30:68:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,58:30:58:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,73:31:73:1.00:2	0/1:0,61:30:61:1.00:2	0/1:0,86:30:86:1.00:2
chr4	55143577	rs10028020	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,84:31:174:0.483:2	./.	./.	./.	./.	./.	0/1:78,75:31:153:0.490:2	./.
chr4	55152040	rs2228230	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,42:31:76:0.553:2	./.	0/1:39,36:31:75:0.480:2	./.	./.	./.	0/1:24,30:31:54:0.556:2	./.
chr4	55161391	rs7685117	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:29:41:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,100:29:100:1.00:2	0/1:0,77:29:77:1.00:2	0/1:0,62:28:62:1.00:2	0/1:0,90:29:90:1.00:2	0/1:0,86:28:87:1.00:2	0/1:0,62:29:62:1.00:2	0/1:0,74:28:74:1.00:2	0/1:0,73:28:73:1.00:2
chr4	55524252	rs72550820	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,35:30:54:0.648:2	0/1:18,23:31:41:0.561:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	55593464	rs3822214	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,74:33:148:0.503:2	./.
chr4	55599268	rs55789615	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,15:31:39:0.385:2	./.	./.	./.	./.	./.	./.
chr4	55602765	rs3733542	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,12:31:23:0.522:2	./.
chr4	55946171	rs35961234	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,40:32:100:0.400:2	./.	./.	./.	./.	./.	./.
chr4	55955106	rs121917766	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:32:110:0.036:2	./.	./.	./.
chr4	55972974	rs1870377	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,33:32:62:0.532:2	./.	0/1:46,31:32:77:0.403:2	./.	0/1:62,41:33:103:0.398:2	0/1:36,47:32:83:0.566:2	0/1:3,129:32:132:0.977:2
chr4	55976647	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:32:121:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	55979558	rs2305948	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,3:28:16:0.188:2	./.	./.	0/1:61,56:29:117:0.479:2	0/1:1,107:30:108:0.991:2	./.	./.	./.	./.
chr4	55991461	rs56233104	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,45:29:87:0.517:2	./.	./.	./.
chr4	56225548	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:33:145:0.028:2	./.	./.
chr4	56301675	rs35793438	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:77,76:32:153:0.497:2	0/1:88,63:32:151:0.417:2	./.	./.	./.	./.	./.	0/1:98,96:32:194:0.495:2	./.	./.	./.
chr4	56309992	rs3736544	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,38:32:86:0.442:2	0/1:22,19:32:41:0.463:2	0/1:5,5:32:10:0.500:2	0/1:40,36:32:76:0.474:2	0/1:1,50:32:51:0.980:2	0/1:0,84:31:84:1.00:2	0/1:0,73:32:73:1.00:2	0/1:3,101:32:104:0.971:2	0/1:70,54:31:124:0.435:2	./.	0/1:0,124:32:124:1.00:2
chr4	56310815	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,10:28:186:0.054:2	./.	./.	./.	./.	./.
chr4	56322387	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:33:80:0.050:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	56325365	rs34897046	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:30,22:33:52:0.423:2	0/1:13,21:33:34:0.618:2	./.	./.	./.	./.	./.	0/1:37,14:32:51:0.275:2	./.	./.	./.
chr4	56447005	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:32:146:0.027:2	./.	./.	./.	./.	./.
chr4	56458302	rs73817207	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,17:30:42:0.405:2
chr4	56471433	rs1873091	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,90:32:196:0.459:2	./.	./.	./.	./.	0/1:97,96:32:193:0.497:2
chr4	56475338	rs3805383	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:27,18:31:45:0.400:2	0/1:25,16:31:41:0.390:2	./.	./.	0/1:35,28:31:63:0.444:2	0/1:34,36:31:70:0.514:2	./.	0/1:46,59:32:105:0.562:2	./.	./.	0/1:38,32:33:70:0.457:2
chr4	56756531	rs2290016	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:29:9:0.444:2	./.	./.	0/1:30,38:29:68:0.559:2	./.	./.	./.	0/1:26,31:28:57:0.544:2	./.
chr4	56770572	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:33:102:0.039:2	./.
chr4	56819428	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:32:42:0.095:2	./.
chr4	56831860	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,4:30:63:0.063:2	./.	./.	./.	./.	0/1:63,4:28:67:0.060:2	./.	./.	./.	./.	./.
chr4	56835309	rs2593087	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,41:28:77:0.532:2	./.	./.	./.
chr4	56840969	rs139171602	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,37:32:83:0.446:2	0/1:20,22:31:42:0.524:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	56874517	rs3214045	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:12,12:33:24:0.500:2	0/1:15,13:33:28:0.464:2	./.	0/1:16,17:32:33:0.515:2	./.	./.	./.	0/1:17,7:32:24:0.292:2	./.	0/1:6,18:33:24:0.750:2	./.
chr4	56878116	rs145959811	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,29:30:92:0.315:2	./.	./.	./.	./.	./.
chr4	57180473	rs6823339	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,15:29:33:0.455:2	0/1:20,19:30:39:0.487:2	./.	0/1:20,22:30:42:0.524:2	./.	0/1:10,14:29:24:0.583:2	0/1:14,17:30:31:0.548:2
chr4	57180563	rs59615456	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	0/1:4,6:26:10:0.600:2	./.	0/1:1,3:27:4:0.750:2	./.	./.	./.	0/1:0,2:27:2:1.00:2
chr4	57180911	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,29:31:79:0.367:2	./.	./.
chr4	57180959	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:31:86:0.047:2
chr4	57180968	rs112098777	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:28:14:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	57181629	rs61750793	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:30:3:1.00:2	0/1:4,5:29:9:0.556:2	./.	./.	./.	./.	0/1:3,4:30:7:0.571:2	./.
chr4	57181632	rs7672073	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,6:31:6:1.00:2	0/1:0,6:31:6:1.00:2	./.	0/1:0,3:30:3:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,7:28:7:1.00:2	0/1:0,2:30:2:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,10:32:10:1.00:2
chr4	57181995	rs3796547	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:0,23:31:23:1.00:2	0/1:11,10:30:21:0.476:2	0/1:14,14:28:28:0.500:2	0/1:0,28:30:28:1.00:2	./.	0/1:9,13:31:22:0.591:2	0/1:12,13:31:25:0.520:2	0/1:15,14:31:29:0.483:2
chr4	57182647	rs3822003	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,28:32:28:1.00:2	0/1:15,18:31:33:0.545:2	0/1:16,10:32:26:0.385:2	0/1:0,34:32:34:1.00:2	./.	0/1:17,12:34:29:0.414:2	0/1:26,15:32:41:0.366:2	0/1:12,7:32:19:0.368:2
chr4	57182758	rs28559894	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:30:4:0.750:2	0/1:0,18:28:18:1.00:2	0/1:20,11:29:31:0.355:2	0/1:16,17:29:33:0.515:2	0/1:1,17:30:18:0.944:2	./.	0/1:16,11:31:27:0.407:2	0/1:18,14:29:32:0.438:2	0/1:6,7:29:13:0.538:2
chr4	57190356	rs7695701	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,18:30:30:0.600:2	./.	0/1:86,66:30:152:0.434:2	0/1:86,74:31:162:0.463:2	./.	0/1:94,89:30:183:0.486:2	./.	0/1:62,70:30:132:0.530:2	0/1:83,71:29:154:0.461:2
chr4	57204777	rs8340	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:3,158:30:161:0.981:2	0/1:2,80:30:82:0.976:2	./.	./.	./.	./.	./.	0/1:81,92:30:173:0.532:2	./.	./.	./.
chr4	57211352	rs12498340	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,105:33:105:1.00:2	0/1:1,73:32:74:0.986:2	./.	./.	./.	./.	./.	0/1:69,90:33:159:0.566:2	./.	./.	./.
chr4	57215677	rs3796544	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:31:11:0.545:2	./.	0/1:34,36:31:70:0.514:2	0/1:42,39:31:81:0.481:2	./.	0/1:61,37:31:98:0.378:2	./.	0/1:48,38:32:86:0.442:2	0/1:47,37:32:84:0.440:2
chr4	57219592	rs6554348	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,53:32:53:1.00:2	0/1:0,25:32:25:1.00:2	0/1:3,7:32:10:0.700:2	./.	0/1:24,18:31:42:0.429:2	0/1:28,25:30:53:0.472:2	./.	0/1:0,44:31:44:1.00:2	0/1:46,41:32:88:0.471:2	0/1:30,27:31:57:0.474:2	0/1:44,53:31:97:0.546:2
chr4	57219613	rs17086696	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:2,50:33:52:0.962:2	0/1:0,26:32:26:1.00:2	./.	./.	./.	./.	./.	0/1:19,26:33:45:0.578:2	./.	./.	./.
chr4	57237683	rs6554354	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:33:11:0.273:2	./.	0/1:18,13:32:31:0.419:2	0/1:27,17:32:44:0.386:2	./.	0/1:27,19:32:46:0.413:2	./.	0/1:14,24:33:38:0.632:2	0/1:33,39:33:72:0.542:2
chr4	57237751	rs188668680	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,29:31:60:0.483:2	./.	./.	./.
chr4	57250455	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:27:11:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	57261610	rs2660744	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:194,5:33:199:0.025:2	0/1:175,5:33:180:0.028:2	0/1:40,6:31:46:0.130:2	0/1:171,27:31:198:0.136:2	0/1:151,9:31:160:0.056:2	0/1:179,15:32:194:0.077:2	0/1:148,30:31:178:0.169:2	0/1:181,17:32:198:0.086:2	0/1:174,23:33:197:0.117:2	0/1:188,12:31:200:0.060:2	0/1:172,25:31:197:0.127:2
chr4	57261623	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:184,6:32:191:0.032:2	./.	./.	./.	0/1:155,5:30:160:0.031:2	0/1:189,5:28:194:0.026:2	./.	./.	./.	./.	./.
chr4	57265383	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,5:29:182:0.027:2
chr4	57268328	rs2271924	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,34:30:59:0.576:2	./.	./.
chr4	57273840	rs11538098	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,5:30:15:0.333:2	./.	0/1:43,38:30:81:0.469:2	0/1:54,57:30:111:0.514:2	./.	0/1:71,60:30:131:0.458:2	./.	0/1:56,35:29:91:0.385:2	0/1:60,44:30:104:0.423:2
chr4	57312933	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:33:149:0.027:2	./.	./.	./.
chr4	57314612	rs138933625	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,32:32:100:0.320:2	./.
chr4	57314674	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:124,4:32:128:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr4	57314715	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,4:31:89:0.045:2	./.	./.	./.	./.	./.	./.	./.
chr4	57314905	rs11549976	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,74:30:160:0.463:2	0/1:62,68:29:130:0.523:2	./.	./.	./.	./.	./.	./.
chr4	57314961	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:31:123:0.033:2	./.	./.	./.	./.	./.
chr4	57314966	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:32:111:0.036:2	./.	./.	./.	./.	./.
chr4	57333822	rs12513091	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,50:29:57:0.893:2	0/1:1,29:28:31:0.967:2	./.	./.	./.	0/1:24,65:28:89:0.730:2	./.	0/1:45,37:28:82:0.451:2	./.	./.	./.
chr4	57333859	rs111673705	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,50:31:98:0.510:2	0/1:58,52:31:110:0.473:2	./.	./.	./.	./.	./.	./.
chr4	57337938	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:186,10:28:196:0.051:2	./.	./.	./.	./.	./.	./.	./.
chr4	57337995	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:165,6:31:171:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr4	57352505	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,4:32:91:0.044:2	./.	./.	./.	./.	./.	./.	./.
chr4	57352567	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,4:30:116:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr4	57361553	rs34419325	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,39:34:80:0.488:2	./.	./.
chr4	57377500	rs370613432	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,6:34:92:0.065:2	./.	./.
chr4	57516849	rs76451666	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:37,27:33:64:0.422:2	0/1:29,13:32:42:0.310:2	./.	./.	./.	./.	./.	0/1:41,35:31:76:0.461:2	./.	./.	./.
chr4	57516896	rs4371677	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,26:33:65:0.400:2	0/1:36,12:32:48:0.250:2	0/1:1,7:32:8:0.875:2	0/1:44,40:32:84:0.476:2	0/1:0,36:32:36:1.00:2	0/1:25,33:32:58:0.569:2	0/1:20,29:32:49:0.592:2	0/1:40,44:31:84:0.524:2	./.	0/1:43,35:32:78:0.449:2	0/1:0,76:33:76:1.00:2
chr4	57547802	rs28362615	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,20:32:51:0.400:2	0/1:34,29:32:63:0.460:2	0/1:0,12:31:12:1.00:2	0/1:47,40:31:87:0.460:2	0/1:1,71:31:72:0.986:2	0/1:0,88:31:88:1.00:2	0/1:1,81:31:82:0.988:2	0/1:1,101:31:102:0.990:2	0/1:58,57:33:115:0.496:2	0/1:29,38:32:67:0.567:2	0/1:49,47:31:96:0.490:2
chr4	57686760	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,10:31:31:0.323:2	0/1:10,8:32:18:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	57797100	rs2227902	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,59:29:106:0.557:2	./.	0/1:67,82:30:149:0.550:2	0/1:75,69:30:145:0.479:2	./.	./.	./.
chr4	57797253	rs3796530	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,17:28:54:0.315:2	./.	0/1:36,17:31:53:0.321:2	0/1:40,23:29:63:0.365:2	./.	./.	./.
chr4	57797265	rs144031960	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,4:34:50:0.080:2	./.	0/1:43,7:32:50:0.140:2	0/1:62,5:35:67:0.075:2	./.	./.	./.
chr4	57797283	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,6:31:44:0.136:2	./.	0/1:41,6:31:47:0.128:2	./.	./.	./.	./.
chr4	57797308	rs2227903	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,11:31:38:0.289:2	./.	0/1:27,11:32:38:0.289:2	0/1:42,15:32:57:0.263:2	./.	./.	./.
chr4	57797414	rs3796529	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,15:31:29:0.517:2	0/1:11,15:29:26:0.577:2	0/1:21,11:30:32:0.344:2	./.	./.	0/1:17,23:31:40:0.575:2	./.	./.
chr4	57797467	rs114282228	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,23:32:49:0.469:2	./.	./.
chr4	57798144	rs61748757	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,43:32:96:0.448:2	./.	./.	./.	./.	./.
chr4	57798189	rs2227901	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,50:32:102:0.490:2	0/1:25,34:33:59:0.576:2	0/1:51,39:32:90:0.433:2	./.	./.	0/1:55,48:33:103:0.466:2	./.	./.
chr4	57829669	rs61747375	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,86:31:170:0.521:2	0/1:95,80:30:175:0.457:2	./.	./.	./.	./.	./.	./.
chr4	57842977	rs201998848	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,10:28:30:0.333:2	./.	./.
chr4	57843320	rs4865167	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:20:3:1.00:2	0/1:0,3:30:3:1.00:2	./.	./.	./.	0/1:0,6:30:6:1.00:2	0/1:0,3:29:3:1.00:2	./.
chr4	57876955	rs1718878	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,51:32:116:0.440:2	0/1:39,19:32:58:0.328:2	0/1:12,7:31:19:0.368:2	0/1:75,69:31:144:0.479:2	./.	./.	0/1:62,36:32:98:0.367:2	./.	./.	0/1:73,45:32:118:0.381:2	./.
chr4	57881715	rs1713982	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,8:33:31:0.258:2	0/1:8,13:33:21:0.619:2	0/1:4,4:33:8:0.500:2	0/1:14,17:33:31:0.548:2	./.	./.	0/1:13,20:33:33:0.606:2	./.	./.	0/1:7,15:34:22:0.682:2	./.
chr4	57887150	rs2271806	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,30:32:57:0.526:2	./.	0/1:28,30:32:58:0.517:2	0/1:18,46:31:64:0.719:2	./.	./.	./.
chr4	57889677	rs1056364	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,43:32:92:0.467:2	0/1:24,28:31:52:0.538:2	0/1:5,5:32:10:0.500:2	0/1:41,59:32:100:0.590:2	0/1:0,62:31:62:1.00:2	0/1:69,44:32:113:0.389:2	0/1:40,47:32:87:0.540:2	0/1:0,96:32:96:1.00:2	0/1:47,44:32:91:0.484:2	0/1:50,32:32:82:0.390:2	0/1:59,49:32:108:0.454:2
chr4	62598548	rs191915391	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,15:32:30:0.500:2	0/1:10,11:32:21:0.524:2	./.	./.	./.	0/1:11,19:31:30:0.633:2	./.	./.	./.	./.	./.
chr4	62598689	rs10434219	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:22,23:31:45:0.511:2	0/1:24,17:31:41:0.415:2	0/1:9,10:31:19:0.526:2	./.	./.	0/1:43,28:29:71:0.394:2	0/1:28,22:30:50:0.440:2	0/1:1,46:30:47:0.979:2	0/1:44,29:32:73:0.397:2	0/1:34,21:32:55:0.382:2	./.
chr4	62758404	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,6:31:134:0.045:2	./.	./.	./.
chr4	62761478	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:31:139:0.029:2
chr4	62800624	rs61747658	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,72:33:186:0.387:2	0/1:99,92:32:192:0.482:2	./.	./.	./.	./.	./.	./.
chr4	62800728	rs734644	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:33:65:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,81:32:81:1.00:2	0/1:2,74:31:76:0.974:2	0/1:45,38:32:83:0.458:2	0/1:65,52:33:117:0.444:2	0/1:2,81:32:83:0.976:2	0/1:40,50:33:90:0.556:2	0/1:45,46:31:92:0.505:2	0/1:40,51:32:91:0.560:2
chr4	62845388	rs1397547	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,167:29:167:1.00:2	0/1:0,109:28:109:1.00:2	0/1:0,32:28:32:1.00:2	0/1:0,142:29:142:1.00:2	0/1:0,141:27:141:1.00:2	0/1:2,158:28:160:0.988:2	0/1:0,157:29:157:1.00:2	0/1:1,131:29:132:0.992:2	0/1:0,162:29:162:1.00:2	0/1:0,155:29:155:1.00:2	0/1:0,145:28:145:1.00:2
chr4	62845490	rs1397548	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:31:65:1.00:2	0/1:0,40:31:40:1.00:2	0/1:2,5:32:7:0.714:2	0/1:0,52:31:53:1.00:2	0/1:0,48:31:48:1.00:2	0/1:36,21:30:57:0.368:2	0/1:32,23:31:55:0.418:2	0/1:0,43:31:43:1.00:2	0/1:47,24:31:71:0.338:2	0/1:25,20:30:45:0.444:2	0/1:39,28:31:67:0.418:2
chr4	65175596	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,8:34:161:0.050:2
chr4	65180463	rs143746083	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,69:26:160:0.431:2	./.
chr4	66197804	rs7349683	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,16:31:42:0.381:2	0/1:17,19:31:36:0.528:2	./.	0/1:28,15:32:43:0.349:2	./.	0/1:17,30:32:47:0.638:2	0/1:16,19:32:35:0.543:2	0/1:16,28:32:44:0.636:2
chr4	66233127	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:32:84:0.048:2	./.	./.	./.	./.
chr4	66509085	rs33932471	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:40,22:32:62:0.355:2	0/1:23,15:33:38:0.395:2	./.	./.	./.	./.	0/1:28,10:32:38:0.263:2	./.	./.	./.	./.
chr4	66509120	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:30:133:0.030:2
chr4	66535284	rs55860557	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:25:6:0.667:2	./.	./.	./.	./.	0/1:41,21:31:62:0.339:2	0/1:26,14:33:40:0.350:2	./.	./.
chr4	67142620	rs73239138	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,8:30:17:0.471:2	0/1:8,5:31:13:0.385:2	./.	0/1:13,6:30:19:0.316:2	0/1:13,10:31:23:0.435:2	./.	0/1:0,10:31:10:1.00:2	./.	./.	0/1:14,7:28:21:0.333:2	./.
chr4	68374597	rs1056789	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,110:31:110:1.00:2	0/1:0,60:32:60:1.00:2	0/1:9,13:32:22:0.591:2	0/1:58,49:32:107:0.458:2	0/1:0,84:31:84:1.00:2	0/1:1,116:31:117:0.991:2	0/1:44,35:30:79:0.443:2	0/1:72,55:31:127:0.433:2	0/1:0,126:32:126:1.00:2	0/1:1,74:31:75:0.987:2	0/1:0,139:32:140:1.00:2
chr4	68374644	rs377691757	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,4:32:112:0.036:2	./.	./.	./.	./.	./.	./.
chr4	68374673	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,4:32:97:0.041:2	./.	./.	./.	./.	./.	./.
chr4	68374676	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:92,4:32:96:0.042:2	./.	./.	./.	./.	./.	./.
chr4	68380070	rs1056787	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:30:12:0.250:2	./.	./.	./.	./.	./.	./.	./.	0/1:77,65:32:142:0.458:2
chr4	68380215	rs11250	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,144:33:147:0.980:2	0/1:1,84:32:85:0.988:2	0/1:10,6:33:16:0.375:2	0/1:94,58:32:152:0.382:2	0/1:1,98:32:99:0.990:2	0/1:4,147:32:151:0.974:2	0/1:64,58:32:122:0.475:2	0/1:83,70:32:153:0.458:2	0/1:5,141:33:146:0.966:2	0/1:1,113:32:114:0.991:2	0/1:0,165:33:166:1.00:2
chr4	68383938	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,7:32:88:0.080:2	./.	./.	./.	./.	./.
chr4	68383959	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,7:32:108:0.065:2	./.	./.	./.	./.	./.
chr4	68384008	rs355510	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,147:33:147:1.00:2	0/1:0,61:32:61:1.00:2	0/1:9,6:32:15:0.400:2	0/1:100,54:32:154:0.351:2	0/1:0,64:32:64:1.00:2	0/1:0,112:32:112:1.00:2	0/1:64,33:33:97:0.340:2	0/1:72,55:33:127:0.433:2	0/1:2,106:33:108:0.981:2	0/1:0,105:33:105:1.00:2	0/1:0,157:33:157:1.00:2
chr4	68384951	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:33:84:0.048:2	0/1:100,6:32:106:0.057:2	./.	0/1:124,7:32:131:0.053:2	./.
chr4	68385042	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:167,5:30:172:0.029:2	./.	./.	./.	./.	./.	./.
chr4	68385142	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,5:27:135:0.037:2	./.	./.	./.	./.	./.	./.
chr4	68385144	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:128,4:31:132:0.030:2	./.	./.	./.	./.	./.	./.
chr4	68436883	rs13111555	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,169:33:170:0.994:2	0/1:0,84:32:84:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,137:33:137:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,159:32:159:1.00:2	0/1:0,123:33:123:1.00:2	0/1:89,88:33:177:0.497:2	0/1:0,170:33:170:1.00:2	0/1:1,172:33:173:0.994:2	0/1:0,160:33:160:1.00:2
chr4	68442968	rs11556614	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,55:30:111:0.495:2	0/1:40,29:29:69:0.420:2	0/1:0,6:29:6:1.00:2	0/1:1,128:29:129:0.992:2	./.	./.	0/1:0,75:28:75:1.00:2	0/1:54,53:29:107:0.495:2	0/1:43,52:30:95:0.547:2	./.	0/1:78,68:29:146:0.466:2
chr4	68447040	rs11556615	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,33:32:57:0.579:2	0/1:17,20:31:37:0.541:2	0/1:0,4:31:4:1.00:2	0/1:32,34:32:66:0.515:2	./.	./.	0/1:31,18:32:49:0.367:2	./.	0/1:41,28:32:70:0.406:2	./.	0/1:45,36:32:81:0.444:2
chr4	68489892	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:33:120:0.033:2	./.	./.
chr4	68497597	rs77075932	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,25:31:44:0.568:2	./.	./.	0/1:28,33:31:61:0.541:2	./.	0/1:30,29:31:59:0.492:2	./.
chr4	68500171	rs10008910	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:32:8:0.500:2	./.	0/1:5,6:30:11:0.545:2	./.
chr4	68512478	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:32:43:0.093:2	./.	./.
chr4	68514851	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:33:72:0.056:2	./.
chr4	68534392	rs10010188	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,10:31:20:0.500:2	./.	./.	0/1:17,15:31:32:0.469:2	./.	0/1:13,9:32:22:0.409:2	./.
chr4	68562365	rs17572160	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,18:31:28:0.643:2	./.	./.	./.	./.	./.	0/1:106,82:33:188:0.436:2	./.	./.
chr4	68619601	rs4986942	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,48:30:108:0.444:2	./.	./.	./.	./.
chr4	68619618	rs144900788	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,63:31:126:0.500:2	./.	./.	./.	./.	./.
chr4	68749618	rs55766746	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,8:33:21:0.381:2	./.
chr4	68780399	rs1371932	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,151:30:151:1.00:2	0/1:2,91:29:93:0.978:2	0/1:0,21:30:21:1.00:2	./.	0/1:82,43:29:125:0.344:2	0/1:81,92:29:173:0.532:2	./.	0/1:0,160:30:160:1.00:2	0/1:82,73:30:155:0.471:2	0/1:0,156:30:156:1.00:2	0/1:1,172:29:173:0.994:2
chr4	68784774	rs353163	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:30:51:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,6:28:6:1.00:2	0/1:36,23:31:59:0.390:2	0/1:20,19:30:39:0.487:2	0/1:38,25:29:63:0.397:2	./.	0/1:4,58:30:62:0.935:2	0/1:34,24:30:58:0.414:2	0/1:0,37:30:37:1.00:2	0/1:1,58:30:59:0.983:2
chr4	68810246	rs1370840	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,46:33:88:0.523:2	0/1:41,24:32:65:0.369:2	./.	0/1:29,16:32:45:0.356:2	./.	./.	0/1:40,36:33:77:0.474:2	./.
chr4	68812283	rs11930532	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:32:38:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,7:31:7:1.00:2	0/1:31,31:31:62:0.500:2	0/1:33,22:30:55:0.400:2	0/1:1,61:30:62:0.984:2	0/1:42,22:30:64:0.344:2	0/1:1,58:31:59:0.983:2	0/1:0,53:32:53:1.00:2	0/1:28,12:32:40:0.300:2	0/1:0,66:31:66:1.00:2
chr4	68829109	rs977728	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,42:30:79:0.532:2	0/1:51,22:30:73:0.301:2	./.	0/1:45,37:30:82:0.451:2	./.	./.	0/1:33,17:31:50:0.340:2	./.
chr4	68928537	rs3819257	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,80:31:183:0.437:2	0/1:94,79:31:173:0.457:2	./.	0/1:140,57:32:197:0.289:2	./.	0/1:97,97:33:194:0.500:2	0/1:123,67:32:190:0.353:2	./.
chr4	68928740	rs1837215	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:31:67:1.00:2	0/1:2,46:31:49:0.958:2	0/1:0,8:30:8:1.00:2	0/1:33,33:31:66:0.500:2	0/1:22,25:31:47:0.532:2	0/1:1,57:29:58:0.983:2	0/1:29,26:31:55:0.473:2	0/1:1,64:31:66:0.985:2	0/1:48,32:31:80:0.400:2	0/1:33,12:30:45:0.267:2	0/1:0,93:31:95:1.00:2
chr4	68935672	rs12504120	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,29:31:61:0.475:2	0/1:9,17:30:26:0.654:2	./.	0/1:16,20:30:36:0.556:2	./.	0/1:40,37:32:77:0.481:2	0/1:32,25:32:57:0.439:2	./.
chr4	68935718	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:34:112:0.036:2	./.	./.
chr4	68995529	rs10030708	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:42,37:32:79:0.468:2	0/1:33,29:32:62:0.468:2	./.	./.	0/1:57,36:30:93:0.387:2	0/1:58,57:31:115:0.496:2	./.	0/1:67,62:32:129:0.481:2	0/1:65,52:32:117:0.444:2	0/1:59,60:33:119:0.504:2	0/1:2,109:32:111:0.982:2
chr4	69056974	rs114552880	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,83:33:181:0.459:2	./.	./.
chr4	69078113	rs4463136	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,113:33:113:1.00:2	0/1:0,69:33:69:1.00:2	0/1:11,8:30:19:0.421:2	0/1:92,91:33:183:0.497:2	0/1:96,65:32:161:0.404:2	0/1:0,177:32:177:1.00:2	0/1:76,86:33:162:0.531:2	0/1:2,194:33:196:0.990:2	0/1:118,81:33:200:0.407:2	0/1:86,59:33:145:0.407:2	0/1:4,162:33:166:0.976:2
chr4	69094507	rs2319797	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,174:32:176:0.989:2	0/1:0,89:32:89:1.00:2	0/1:13,11:31:24:0.458:2	0/1:100,94:31:194:0.485:2	0/1:105,63:31:168:0.375:2	0/1:1,181:31:182:0.995:2	0/1:103,90:32:193:0.466:2	0/1:0,194:32:194:1.00:2	0/1:96,102:33:198:0.515:2	0/1:108,90:32:198:0.455:2	0/1:2,181:32:183:0.989:2
chr4	69094575	rs2319796	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,130:32:130:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,140:32:140:1.00:2	0/1:1,99:32:100:0.990:2	0/1:1,132:32:133:0.992:2	0/1:0,125:32:125:1.00:2	0/1:1,99:32:100:0.990:2	0/1:0,134:33:134:1.00:2	0/1:0,123:32:123:1.00:2	0/1:0,134:32:134:1.00:2
chr4	69095197	rs12331141	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,60:32:60:1.00:2	0/1:0,52:32:52:1.00:2	./.	0/1:38,29:33:67:0.433:2	0/1:33,15:32:48:0.313:2	0/1:0,74:33:74:1.00:2	0/1:24,31:32:55:0.564:2	0/1:0,74:33:74:1.00:2	0/1:40,50:33:90:0.556:2	0/1:41,32:33:73:0.438:2	0/1:0,102:32:102:1.00:2
chr4	69101965	rs371312565	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,36:30:91:0.396:2	./.	./.	./.
chr4	69203551	rs10213623	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,59:32:59:1.00:2	0/1:1,38:32:39:0.974:2	0/1:0,38:31:39:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,56:33:56:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,61:32:61:1.00:2
chr4	69343287	rs976002	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,66:32:136:0.485:2	./.	0/1:142,45:32:187:0.241:2	./.	./.	./.	0/1:150,36:33:186:0.194:2	0/1:148,34:32:182:0.187:2
chr4	69416396	rs201282859	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:33:198:0.025:2	./.
chr4	69416515	rs377204498	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,13:29:101:0.129:2	./.	./.	./.	./.	./.
chr4	69416556	rs13102139	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,30:29:31:0.968:2	0/1:172,4:32:176:0.023:2	./.	0/1:150,44:30:194:0.227:2	0/1:179,16:31:195:0.082:2	0/1:140,37:28:178:0.209:2
chr4	69417570	rs28374627	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:33:88:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,7:32:7:1.00:2	0/1:1,155:33:157:0.994:2	0/1:0,91:32:92:1.00:2	./.	0/1:0,81:33:81:1.00:2	0/1:2,77:32:79:0.975:2	0/1:123,69:33:192:0.359:2	0/1:118,62:33:180:0.344:2	0/1:100,90:33:190:0.474:2
chr4	69433714	rs34664906	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,82:31:82:1.00:2	./.	./.	0/1:95,59:32:154:0.383:2	0/1:54,71:31:125:0.568:2	0/1:86,87:31:173:0.503:2
chr4	69433932	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,3:33:50:0.060:2	./.
chr4	69433938	rs79242783	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,25:31:40:0.625:2	./.	./.	./.	0/1:44,54:32:98:0.551:2
chr4	69434018	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:34:136:0.029:2	./.	./.
chr4	69434042	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:32:124:0.032:2	./.	./.
chr4	69512847	rs4148269	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,26:33:45:0.578:2	0/1:19,20:32:39:0.513:2	0/1:18,23:32:41:0.561:2	0/1:15,29:32:44:0.659:2	0/1:0,68:32:68:1.00:2	0/1:0,58:33:58:1.00:2	0/1:0,42:32:42:1.00:2	0/1:40,34:33:74:0.459:2
chr4	69513088	rs138592773	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,4:31:20:0.200:2	./.	./.	./.	./.
chr4	69519875	rs138762595	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,13:31:34:0.382:2	./.	./.	0/1:143,51:31:194:0.263:2	./.	./.	./.	./.	./.
chr4	69519916	rs149314105	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,30:31:84:0.357:2	./.
chr4	69520806	.	A	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:129,6:34:135:0.044:2	./.	./.	0/1:142,15:33:157:0.096:2	0/1:78,10:34:88:0.114:2	./.	0/1:102,7:33:109:0.064:2	0/1:141,9:33:150:0.060:2	0/1:160,6:35:166:0.036:2	0/1:111,6:34:117:0.051:2	0/1:166,5:31:171:0.029:2
chr4	69681838	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,3:34:67:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	69681848	rs61749966	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,19:33:50:0.380:2	./.
chr4	69681936	rs61750900	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,19:32:42:0.452:2	./.
chr4	69687987	rs2942857	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,118:33:118:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,124:32:124:1.00:2	0/1:0,32:32:32:1.00:2	0/1:1,125:32:126:0.992:2	0/1:0,44:32:44:1.00:2	0/1:2,111:33:113:0.982:2	0/1:0,142:33:142:1.00:2	0/1:0,152:33:152:1.00:2	0/1:0,178:32:178:1.00:2
chr4	69688051	rs185290404	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,33:30:83:0.398:2	./.	./.	./.
chr4	69688094	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:31:83:0.048:2
chr4	69688102	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:32:83:0.049:2
chr4	69692145	rs376222938	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:31:38:0.105:2	./.	./.
chr4	69692181	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:34:41:0.098:2	./.	./.
chr4	69693162	rs71616903	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.	./.	./.	./.	./.	./.
chr4	69693182	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:195,4:32:199:0.020:2	./.	./.	./.	./.	./.	./.
chr4	69696451	rs112561475	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,38:29:87:0.437:2	./.	./.	./.	./.	./.	./.	0/1:27,31:26:58:0.534:2
chr4	69795626	rs13128286	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,28:31:29:0.966:2	0/1:0,29:30:29:1.00:2	./.	0/1:0,56:31:56:1.00:2	0/1:0,29:29:29:1.00:2	0/1:1,45:30:46:0.978:2	0/1:17,25:31:43:0.595:2	0/1:0,45:30:45:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,27:32:27:1.00:2	0/1:1,46:31:47:0.979:2
chr4	69795635	rs62641707	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,23:32:62:0.371:2	./.	./.	./.	./.	0/1:22,14:31:36:0.389:2	./.	./.
chr4	69795670	rs144454074	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,25:32:50:0.500:2
chr4	69795750	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:32:42:0.095:2	./.
chr4	69798386	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:85,4:32:90:0.045:2	./.	./.	0/1:126,8:31:134:0.060:2	./.	./.	./.
chr4	69817080	rs3749510	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,38:32:52:0.731:2	0/1:20,15:30:35:0.429:2	./.	0/1:0,46:32:46:1.00:2	0/1:34,21:31:55:0.382:2	0/1:21,13:32:34:0.382:2	./.	0/1:21,20:32:41:0.488:2	0/1:22,25:32:47:0.532:2	./.	0/1:33,29:32:63:0.468:2
chr4	69962610	rs28365063	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,21:32:42:0.500:2	./.	0/1:17,25:32:42:0.595:2	./.	./.	./.
chr4	69964271	rs28365062	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,12:26:26:0.462:2	./.	./.	./.	./.
chr4	69964337	rs7438284	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:32:94:1.00:2	0/1:1,46:32:47:0.979:2	0/1:5,4:33:9:0.444:2	0/1:58,46:33:104:0.442:2	0/1:42,19:33:61:0.311:2	0/1:0,141:32:141:1.00:2	0/1:34,37:32:71:0.521:2	0/1:0,101:32:102:1.00:2	0/1:58,66:33:124:0.532:2	./.	0/1:91,77:32:168:0.458:2
chr4	69964338	rs7439366	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:33:94:1.00:2	0/1:1,46:32:47:0.979:2	0/1:5,4:34:9:0.444:2	0/1:59,46:33:105:0.438:2	0/1:42,19:33:61:0.311:2	0/1:0,141:33:141:1.00:2	0/1:34,37:33:71:0.521:2	0/1:0,102:33:102:1.00:2	0/1:57,66:34:123:0.537:2	./.	0/1:91,76:32:167:0.455:2
chr4	69964391	rs34661811	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,33:31:72:0.458:2	./.	./.	./.	./.	./.	./.	0/1:73,72:31:145:0.497:2
chr4	69972949	rs4292394	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,104:32:104:1.00:2	0/1:0,57:32:57:1.00:2	0/1:4,8:33:12:0.667:2	0/1:71,61:32:132:0.462:2	0/1:35,20:32:55:0.364:2	0/1:0,101:32:101:1.00:2	0/1:22,19:33:41:0.463:2	0/1:0,89:32:89:1.00:2	0/1:53,66:33:119:0.555:2	./.	0/1:79,61:32:140:0.436:2
chr4	69972952	rs4348159	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,17:31:40:0.425:2	./.	./.	./.	./.
chr4	69973921	rs57913007	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,90:33:197:0.457:2	./.	./.	./.	./.	./.	./.	0/1:102,82:33:184:0.446:2
chr4	69978302	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:33:116:0.034:2	./.	./.	./.
chr4	69978432	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,3:33:58:0.053:2	./.	./.	./.	./.
chr4	69978447	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:32:38:0.079:2	./.	./.	./.	./.
chr4	69978448	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:31:38:0.079:2	./.	./.	./.	./.
chr4	70066306	rs200852364	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,7:30:123:0.057:2	./.	0/1:119,10:27:129:0.078:2	./.	./.	./.	./.	./.
chr4	70066376	rs144149579	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,7:33:69:0.104:2	./.	0/1:52,10:32:62:0.161:2	./.	./.	./.	./.	./.
chr4	70066408	rs200919649	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,4:31:51:0.078:2	./.	0/1:35,6:31:41:0.146:2	./.	./.	./.	./.	./.
chr4	70066424	rs201914215	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,3:32:15:0.200:2	./.	./.	./.	./.	./.	./.
chr4	70078408	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:31:157:0.025:2	./.
chr4	70078421	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:33:113:0.035:2	./.	./.	./.	./.
chr4	70079802	rs146629153	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:32:49:0.082:2	./.	./.	./.	./.
chr4	70079838	rs4694697	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,8:32:21:0.381:2	./.	0/1:62,61:31:123:0.496:2	./.	0/1:67,49:32:116:0.422:2	./.	./.	0/1:0,132:32:132:1.00:2	./.
chr4	70079855	rs202097467	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:191,6:30:197:0.030:2	./.	0/1:161,4:32:165:0.024:2	./.	./.	./.	./.
chr4	70079919	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,5:31:197:0.025:2	./.	./.	./.	./.	./.	./.
chr4	70079951	rs114705696	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:121,75:33:196:0.383:2	./.	./.	./.	./.	0/1:1,159:34:160:0.994:2	./.	./.
chr4	70080139	rs7688262	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:194,5:31:199:0.025:2	./.	./.	./.	./.	./.	./.
chr4	70080297	rs145676580	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,27:31:60:0.450:2	./.	./.	./.	./.	./.	./.
chr4	70146230	rs13139691	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:141,5:32:146:0.034:2	0/1:17,7:31:24:0.292:2	0/1:95,98:32:193:0.508:2	0/1:111,88:31:199:0.442:2	0/1:101,95:31:196:0.485:2	0/1:101,97:31:198:0.490:2	./.	./.	0/1:0,193:32:193:1.00:2	./.
chr4	70146427	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:36:3:0.667:2	./.	./.	./.
chr4	70146486	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:29:11:0.364:2	./.	./.	./.
chr4	70146520	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:31,4:30:35:0.114:2	0/1:151,4:31:155:0.026:2	./.	./.	0/1:128,8:30:136:0.059:2	0/1:2,5:28:7:0.714:2	0/1:184,5:30:189:0.026:2	./.	./.
chr4	70146704	rs7689398	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,24:31:40:0.600:2	./.	0/1:122,74:31:196:0.378:2	./.	0/1:106,89:31:195:0.456:2	./.	./.	0/1:1,187:32:188:0.995:2	./.
chr4	70146755	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,3:32:8:0.375:2	./.	./.	./.
chr4	70146756	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,3:32:8:0.375:2	./.	./.	./.
chr4	70146804	rs148987832	G	A,C	.	PASS	AC=1,1;AF=0.167,0.167;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/2:32:171:0.480:2	./.	0/1:31:4:0.750:2	./.	./.	./.
chr4	70152499	rs41292341	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,24:32:67:0.358:2	./.	./.	./.	./.	./.	./.	./.
chr4	70155396	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,3:37:69:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr4	70155416	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,8:31:37:0.216:2	./.	./.	./.	./.
chr4	70155475	rs373563163	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,6:33:37:0.162:2	./.	./.	./.	./.
chr4	70156313	rs4235127	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,14:30:31:0.452:2	./.	0/1:15,8:33:23:0.348:2	./.	./.	0/1:0,26:33:26:1.00:2	./.
chr4	70156391	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:191,5:32:196:0.026:2	./.	./.	0/1:189,6:28:197:0.031:2	./.	./.	./.	./.	0/1:188,7:31:195:0.036:2	./.
chr4	70156392	rs10013145	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,6:32:26:0.231:2	./.	0/1:126,71:31:197:0.360:2	./.	0/1:116,82:32:198:0.414:2	0/1:4,25:31:29:0.862:2	./.	0/1:6,189:31:195:0.969:2	./.
chr4	70156450	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,5:32:157:0.032:2	./.	./.	./.
chr4	70156471	rs367609522	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,7:32:137:0.051:2	./.	./.	./.
chr4	70156492	.	C	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:170,5:31:175:0.029:2	./.	./.	0/1:185,9:31:195:0.046:2	0/1:188,12:30:200:0.060:2	0/1:192,5:30:197:0.025:2	./.	0/1:187,10:34:197:0.051:2	./.	0/1:187,6:28:194:0.031:2
chr4	70160277	rs6843900	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:33:5:0.600:2	./.	0/1:16,11:32:27:0.407:2	./.	0/1:7,9:32:16:0.563:2	./.	./.	0/1:0,32:33:32:1.00:2	./.
chr4	70160309	rs6828191	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:31:10:0.600:2	./.	0/1:27,14:32:41:0.341:2	./.	0/1:17,18:33:35:0.514:2	./.	./.	0/1:1,44:32:45:0.978:2	./.
chr4	70160338	rs72552703	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,11:30:60:0.183:2	./.	0/1:42,10:33:52:0.192:2	./.	./.	./.	./.	./.
chr4	70160342	rs72552704	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,9:29:61:0.153:2	./.	0/1:45,6:31:51:0.118:2	./.	./.	./.	./.	./.
chr4	70160343	rs72552705	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,10:27:60:0.167:2	./.	0/1:46,5:31:51:0.098:2	./.	./.	./.	./.	./.
chr4	70346564	rs13142440	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,7:32:27:0.259:2	0/1:49,22:31:71:0.310:2	0/1:18,5:33:23:0.217:2	./.	./.	./.	0/1:59,31:33:90:0.344:2
chr4	70346565	rs13119049	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,7:30:27:0.259:2	0/1:49,22:30:71:0.310:2	0/1:20,5:32:25:0.200:2	./.	./.	./.	0/1:59,31:32:90:0.344:2
chr4	70350993	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,6:31:188:0.032:2	./.	./.	./.
chr4	70350994	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:181,6:30:187:0.032:2	./.	./.	0/1:180,6:30:186:0.032:2	./.	./.	./.
chr4	70351024	rs41297431	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:156,7:29:163:0.043:2	./.	./.	0/1:176,6:31:182:0.033:2	./.	./.	./.
chr4	70351141	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:69,7:31:76:0.092:2	./.	./.	0/1:47,4:29:51:0.078:2	0/1:38,10:31:48:0.208:2	./.	0/1:35,4:31:39:0.103:2	./.	./.	./.	0/1:59,4:27:63:0.063:2
chr4	70355211	rs1845555	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,122:30:122:1.00:2	0/1:0,86:29:86:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,144:29:144:1.00:2	0/1:0,67:29:67:1.00:2	0/1:0,150:29:150:1.00:2	0/1:0,99:30:99:1.00:2	0/1:0,141:29:141:1.00:2	0/1:0,159:30:159:1.00:2	0/1:0,153:30:153:1.00:2	0/1:0,151:29:151:1.00:2
chr4	70361573	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:32:100:0.040:2	./.	./.	./.
chr4	70455309	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,9:30:119:0.076:2	./.	./.	./.	./.	./.
chr4	70455348	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,6:30:81:0.074:2	./.	./.	./.	./.	./.
chr4	70460328	rs4148304	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,55:32:127:0.433:2	0/1:32,26:32:58:0.448:2	./.	./.	./.	0/1:69,81:30:150:0.540:2	./.	./.	./.	0/1:1,103:31:104:0.990:2	0/1:77,73:31:150:0.487:2
chr4	70460941	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,17:13:184:0.092:2
chr4	70462042	rs4148301	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,26:32:62:0.419:2	./.	./.	./.	./.
chr4	70505162	rs28404221	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,27:30:50:0.540:2	./.	./.	./.	./.
chr4	70512721	rs72552708	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,10:31:39:0.256:2	./.	./.	./.	0/1:87,4:32:91:0.044:2	./.	./.
chr4	70512773	rs41292307	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:50,28:34:78:0.359:2	0/1:21,22:33:43:0.512:2	./.	0/1:47,33:34:80:0.413:2	./.	0/1:36,40:33:76:0.526:2	./.	./.	0/1:0,74:33:74:1.00:2	./.	0/1:29,38:32:67:0.567:2
chr4	70512801	rs55864295	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:44,25:32:69:0.362:2	0/1:18,20:32:38:0.526:2	./.	0/1:38,29:32:67:0.433:2	./.	0/1:42,31:30:73:0.425:2	./.	./.	0/1:0,65:31:65:1.00:2	./.	0/1:21,35:31:56:0.625:2
chr4	70512817	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.	./.
chr4	70513139	rs1347046	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,104:33:104:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,102:33:102:1.00:2	0/1:0,69:33:69:1.00:2	0/1:0,111:33:111:1.00:2
chr4	70513199	rs113894762	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,79:32:180:0.439:2	./.	./.	./.
chr4	70596288	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:31:126:0.032:2	./.	./.	./.	./.	./.
chr4	70615479	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,6:33:134:0.045:2
chr4	70615482	rs150406987	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:33:13:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	70800377	rs77374532	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:34:3:0.667:2	./.	0/1:22,21:33:43:0.488:2	0/1:21,23:31:44:0.523:2	./.	./.	./.	./.	./.
chr4	70802218	rs962689	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,62:33:62:1.00:2	0/1:0,54:33:54:1.00:2	0/1:0,5:33:5:1.00:2	./.	./.	./.	./.	./.	./.	0/1:18,38:32:56:0.679:2	./.
chr4	70807747	rs62305467	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:3,105:30:108:0.972:2	0/1:1,84:30:85:0.988:2	0/1:21,7:30:28:0.250:2	./.	./.	./.	./.	./.	./.	0/1:83,80:30:164:0.491:2	./.
chr4	70807771	rs10030475	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,129:32:133:0.970:2	0/1:2,87:32:89:0.978:2	0/1:29,8:31:37:0.216:2	0/1:97,85:31:183:0.467:2	./.	./.	./.	./.	0/1:109,79:32:188:0.420:2	0/1:96,94:32:190:0.495:2	0/1:96,96:32:192:0.500:2
chr4	70824619	rs112194603	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,27:32:95:0.284:2	./.	./.
chr4	70824747	rs140392964	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,5:33:28:0.185:2	./.
chr4	70898907	rs1849937	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,40:32:104:0.385:2	./.	./.	./.	./.	./.	./.	0/1:56,55:32:111:0.495:2
chr4	70898953	rs1136515	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,34:32:34:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,34:32:34:1.00:2	0/1:1,49:33:50:0.980:2	0/1:52,27:32:79:0.342:2	0/1:20,32:33:52:0.615:2	0/1:37,30:33:67:0.448:2
chr4	70920098	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:34:85:0.047:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	70920154	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:32:159:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	71024099	rs1612460	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,39:30:62:0.629:2	./.	./.	./.	0/1:33,52:29:85:0.612:2
chr4	71062256	rs3756132	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,98:32:100:0.980:2	0/1:0,35:32:35:1.00:2	0/1:0,3:30:3:1.00:2	./.	0/1:37,24:31:61:0.393:2	0/1:65,46:31:111:0.414:2	./.	./.	0/1:55,35:32:90:0.389:2	0/1:47,25:33:72:0.347:2	0/1:86,78:32:164:0.476:2
chr4	71062308	rs61747755	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,19:31:29:0.655:2	./.	0/1:91,63:31:154:0.409:2	0/1:109,85:31:194:0.438:2	./.	./.	0/1:119,74:32:193:0.383:2	./.	0/1:92,94:32:186:0.505:2
chr4	71062426	rs17704351	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,84:31:84:1.00:2	0/1:2,45:30:47:0.957:2	0/1:0,4:30:4:1.00:2	./.	0/1:47,32:30:79:0.405:2	0/1:42,33:30:75:0.440:2	./.	./.	0/1:35,30:31:65:0.462:2	0/1:40,21:31:61:0.344:2	0/1:47,53:31:100:0.530:2
chr4	71064301	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:32:141:0.028:2	./.	./.	./.	./.	./.
chr4	71068489	rs3196714	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,95:32:97:0.979:2	0/1:0,74:32:74:1.00:2	0/1:0,15:33:15:1.00:2	./.	0/1:47,35:31:82:0.427:2	0/1:62,61:31:123:0.496:2	./.	./.	0/1:63,78:33:141:0.553:2	0/1:51,58:32:109:0.532:2	0/1:91,74:32:165:0.448:2
chr4	71114956	rs1048152	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,28:31:69:0.406:2	./.	./.	./.	./.	./.	./.	./.
chr4	71115053	rs3775740	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,43:31:67:0.642:2	./.	./.	./.	./.	./.
chr4	71115060	rs3775739	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,78:30:79:1.00:2	0/1:0,37:31:37:1.00:2	0/1:6,7:27:13:0.538:2	./.	./.	./.	./.	./.	./.	0/1:40,20:30:60:0.333:2	./.
chr4	71115152	rs3775738	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:1,46:28:47:0.979:2	0/1:0,32:28:32:1.00:2	0/1:7,5:26:12:0.417:2	./.	./.	0/1:20,17:28:37:0.459:2	./.	./.	./.	0/1:26,19:29:45:0.422:2	./.
chr4	71201254	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,50:33:109:0.463:2
chr4	71201270	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:32:131:0.031:2	./.	./.	./.	./.	./.
chr4	71201388	rs1351419	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,121:32:122:0.992:2	0/1:0,76:32:76:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,136:32:136:1.00:2	0/1:1,131:31:132:0.992:2	0/1:0,128:31:128:1.00:2	0/1:0,102:31:102:1.00:2	0/1:0,152:32:152:1.00:2	0/1:0,131:33:131:1.00:2	0/1:0,95:31:95:1.00:2	0/1:0,135:32:135:1.00:2
chr4	71201648	rs2291182	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:40,38:33:78:0.487:2	0/1:14,14:33:28:0.500:2	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	./.	0/1:29,33:32:62:0.532:2	./.
chr4	71201943	rs13039	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,32:33:69:0.464:2	./.	./.	0/1:20,24:33:44:0.545:2	./.	./.	./.	0/1:43,31:33:75:0.419:2
chr4	71227877	rs62322478	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,45:32:194:0.232:2	./.	./.	./.	0/1:130,67:32:197:0.340:2
chr4	71232388	rs10031844	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,17:32:35:0.486:2	./.	0/1:0,39:31:39:1.00:2	./.	./.	./.	./.	./.
chr4	71232430	rs10024123	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:30:41:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,13:29:13:1.00:2	0/1:0,60:30:60:1.00:2	0/1:30,24:30:54:0.444:2	0/1:0,70:30:70:1.00:2	0/1:0,58:30:58:1.00:2	0/1:0,84:30:84:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,51:31:51:1.00:2
chr4	71232688	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:29:57:0.070:2	./.
chr4	71232701	rs6853742	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,42:32:43:0.977:2	0/1:2,14:32:16:0.875:2	./.	0/1:22,14:32:36:0.389:2	0/1:16,19:31:35:0.543:2	./.	0/1:2,38:31:40:0.950:2	0/1:0,62:32:62:1.00:2	0/1:0,39:32:39:1.00:2	0/1:5,38:32:43:0.884:2	0/1:1,42:31:43:0.977:2
chr4	71232709	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:35:43:0.093:2	./.
chr4	71250272	rs200141400	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,18:33:162:0.111:2	./.	./.	./.	0/1:164,8:34:172:0.047:2
chr4	71275387	rs61336549	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:39,48:33:87:0.552:2	0/1:21,25:33:46:0.543:2	0/1:5,4:32:9:0.444:2	./.	./.	./.	./.	./.	./.	0/1:39,34:33:73:0.466:2	./.
chr4	71275588	rs76971467	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:4:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	71339723	rs2306949	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,29:31:42:0.690:2	./.	./.	./.	./.	./.
chr4	71339728	rs2306948	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,30:30:45:0.667:2	./.	./.	./.	./.	./.
chr4	71346701	rs6826961	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:28,32:32:60:0.533:2	0/1:33,19:32:52:0.365:2	./.	0/1:20,41:32:61:0.672:2	./.	0/1:37,22:33:59:0.373:2	./.	./.	./.	0/1:36,27:31:63:0.429:2	./.
chr4	71347047	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,5:28:168:0.030:2	./.
chr4	71347060	rs74904873	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:115,8:24:123:0.065:2	0/1:74,5:29:79:0.063:2	./.	0/1:156,6:25:162:0.037:2	0/1:164,7:25:171:0.041:2	./.	0/1:179,5:31:184:0.027:2	./.	./.	0/1:151,7:29:158:0.044:2	0/1:153,6:32:159:0.038:2
chr4	71347116	rs41454651	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:116,14:32:130:0.108:2	0/1:69,7:28:76:0.092:2	./.	0/1:173,9:28:183:0.049:2	./.	0/1:169,8:27:178:0.045:2	0/1:182,5:31:187:0.027:2	./.	0/1:132,11:30:143:0.077:2	0/1:184,10:31:194:0.052:2	0/1:162,6:28:168:0.036:2
chr4	71347129	rs80342064	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:132,5:28:137:0.036:2	./.	./.	./.	./.	./.	./.	./.	0/1:138,10:30:148:0.068:2	./.	./.
chr4	71347171	rs147763101	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,15:30:130:0.116:2	./.	./.
chr4	71347185	rs79807294	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,6:26:141:0.043:2	./.	./.	./.	./.	0/1:169,10:19:179:0.056:2	./.	./.	0/1:117,13:32:130:0.100:2	./.	./.
chr4	71347198	rs142474106	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:127,6:25:136:0.045:2	./.	./.	./.	./.	./.	./.	./.	0/1:119,7:23:126:0.056:2	./.	./.
chr4	71347207	rs78564790	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:127,13:28:140:0.093:2	0/1:75,10:26:85:0.118:2	./.	0/1:167,14:30:181:0.077:2	./.	0/1:164,12:29:176:0.068:2	0/1:175,7:27:182:0.038:2	./.	0/1:92,37:32:129:0.287:2	0/1:162,8:22:170:0.047:2	0/1:154,6:33:160:0.038:2
chr4	71347240	rs145745951	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:122,6:25:129:0.047:2	./.	./.	./.	./.	./.	./.	./.	0/1:139,11:23:151:0.073:2	0/1:165,8:22:174:0.046:2	./.
chr4	71347333	rs72655156	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,99:27:180:0.550:2	./.	./.	./.	./.
chr4	71384488	rs28674149	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:32:69:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,75:31:75:1.00:2	0/1:1,71:31:72:0.986:2	0/1:0,100:30:100:1.00:2	0/1:2,59:31:61:0.967:2	0/1:2,82:31:84:0.976:2	0/1:68,40:32:108:0.370:2	0/1:0,73:31:73:1.00:2	0/1:0,95:31:95:1.00:2
chr4	71384537	rs35286445	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,74:32:153:0.484:2	./.	./.	0/1:86,59:33:145:0.407:2	./.	./.
chr4	71388551	rs7660807	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:48,42:32:90:0.467:2	0/1:29,18:31:47:0.383:2	./.	0/1:46,44:32:90:0.489:2	./.	./.	./.	./.	./.	0/1:36,28:33:64:0.438:2	./.
chr4	71396989	rs17676820	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:57,51:32:108:0.472:2	0/1:34,33:32:67:0.493:2	./.	./.	0/1:0,108:31:108:1.00:2	./.	0/1:0,149:32:149:1.00:2	0/1:4,157:31:161:0.975:2	./.	0/1:56,36:33:92:0.391:2	0/1:1,140:31:142:0.993:2
chr4	71468396	rs35859385	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,41:32:102:0.402:2	./.	./.	./.	0/1:54,39:32:93:0.419:2	./.
chr4	71468985	rs35266919	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,28:32:64:0.438:2	./.	./.	./.	0/1:18,18:34:36:0.500:2	./.
chr4	71472164	rs72654387	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,17:32:45:0.378:2	0/1:17,19:32:36:0.528:2	./.	./.	./.	./.
chr4	71472426	rs7680880	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,82:29:177:0.463:2
chr4	71509086	rs7671281	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,25:31:42:0.595:2	./.	./.	./.	./.	./.	./.	0/1:30,33:31:63:0.524:2
chr4	71509254	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,5:31:30:0.167:2	./.
chr4	71509314	rs3796703	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,16:32:22:0.727:2
chr4	71509375	rs186268089	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,12:33:32:0.375:2
chr4	71509431	rs3796704	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,28:33:71:0.394:2	./.	./.	./.	./.	./.	./.	0/1:42,30:34:72:0.417:2
chr4	71510360	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:150,4:31:154:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr4	71510368	rs61737041	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:34:182:0.022:2	./.	./.	./.
chr4	71527854	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:33:156:0.026:2	./.	./.
chr4	71630191	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:32:81:0.049:2	./.	./.	./.	./.
chr4	71639208	rs76427219	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	71644171	rs16845439	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:31:12:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	71888176	rs11544786	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,23:32:43:0.535:2	./.	./.	0/1:32,31:32:63:0.492:2	./.	./.	0/1:41,22:32:63:0.349:2	./.
chr4	72215759	rs149802590	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,36:32:82:0.439:2	./.	./.	./.	./.
chr4	72338616	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:31:85:0.047:2	./.
chr4	72425863	rs1453458	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,85:32:85:1.00:2	0/1:1,49:31:50:0.980:2	0/1:0,61:31:61:1.00:2	0/1:0,64:32:64:1.00:2	0/1:48,46:32:94:0.489:2	0/1:0,71:33:71:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,69:31:69:1.00:2
chr4	72433545	rs1062677	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,59:32:110:0.536:2	0/1:87,87:32:174:0.500:2	./.	./.	0/1:112,82:33:194:0.423:2
chr4	72618296	rs9016	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:29:103:1.00:2	0/1:0,82:29:82:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,118:29:118:1.00:2	0/1:0,100:30:100:1.00:2	0/1:0,116:29:116:1.00:2	0/1:0,133:29:133:1.00:2	0/1:0,138:29:138:1.00:2	0/1:0,153:30:153:1.00:2	0/1:0,114:29:114:1.00:2	0/1:0,130:28:130:1.00:2
chr4	72618323	rs4588	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,9:32:24:0.375:2	./.	./.	0/1:58,57:31:115:0.496:2	./.	./.	0/1:94,54:33:148:0.365:2	./.	./.
chr4	72618334	rs7041	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:33:89:1.00:2	0/1:0,58:32:58:1.00:2	0/1:7,15:33:22:0.682:2	0/1:0,100:33:100:1.00:2	0/1:51,43:32:94:0.457:2	0/1:54,44:32:98:0.449:2	0/1:66,39:33:105:0.371:2	0/1:81,55:32:136:0.404:2	./.	0/1:0,81:32:81:1.00:2	0/1:1,107:32:108:0.991:2
chr4	72620788	rs76803094	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,50:33:105:0.476:2	./.	./.	./.	./.	./.	./.	./.
chr4	72623832	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:32:98:0.041:2	./.	./.
chr4	73013097	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:33:82:0.049:2	./.	./.
chr4	73171703	rs187956094	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,7:31:16:0.438:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	73178175	rs150270324	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,48:33:86:0.558:2	./.	./.	./.
chr4	73205246	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:31:118:0.034:2	./.	./.	./.	./.	./.
chr4	73414286	rs788908	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:32:92:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,15:32:15:1.00:2	0/1:59,43:30:102:0.422:2	0/1:0,81:31:81:1.00:2	0/1:0,104:30:104:1.00:2	0/1:62,37:30:99:0.374:2	0/1:1,104:31:105:0.990:2	0/1:43,54:32:97:0.557:2	0/1:49,45:30:94:0.479:2	0/1:1,131:31:132:0.992:2
chr4	73930552	rs3762883	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,42:33:76:0.553:2	0/1:32,17:33:49:0.347:2	0/1:4,10:33:14:0.714:2	0/1:49,38:33:87:0.437:2	0/1:46,41:32:87:0.471:2	0/1:61,51:32:112:0.455:2	./.	./.	0/1:64,59:34:123:0.480:2	0/1:36,52:33:88:0.591:2	0/1:1,143:33:144:0.993:2
chr4	73935289	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,9:32:12:0.750:2	./.	./.	./.	./.	./.
chr4	73942678	rs2306058	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,43:33:109:0.394:2	0/1:25,26:33:51:0.510:2	./.	./.	./.	0/1:67,60:32:127:0.472:2	./.	0/1:5,118:32:123:0.959:2	0/1:85,71:34:156:0.455:2	./.	./.
chr4	73956736	rs6855349	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,52:31:83:0.627:2	0/1:37,28:32:65:0.431:2	./.	0/1:82,64:30:146:0.438:2	0/1:41,37:30:78:0.474:2	0/1:70,48:30:118:0.407:2	./.	./.	0/1:65,57:32:122:0.467:2	0/1:50,44:31:94:0.468:2	0/1:1,132:31:133:0.992:2
chr4	73957636	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:34:162:0.025:2	./.	./.	./.
chr4	73957898	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:31:164:0.024:2
chr4	73959931	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:30:56:0.071:2	./.	./.	./.	./.	./.
chr4	73991006	rs6822576	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,135:30:135:1.00:2	0/1:0,89:28:89:1.00:2	0/1:0,25:29:25:1.00:2	0/1:0,96:29:96:1.00:2	0/1:0,96:28:96:1.00:2	0/1:0,106:30:106:1.00:2	0/1:1,91:29:92:0.989:2	0/1:0,89:29:89:1.00:2	0/1:0,116:30:116:1.00:2	0/1:0,101:29:101:1.00:2	0/1:0,107:29:107:1.00:2
chr4	74000856	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:33:134:0.030:2	./.
chr4	74280822	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:122,4:32:126:0.032:2	./.	./.	./.	./.	./.	./.
chr4	74285239	rs962004	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,13:31:33:0.394:2	0/1:3,14:32:17:0.824:2	0/1:0,3:31:3:1.00:2	0/1:27,16:30:43:0.372:2	./.	./.	0/1:24,15:30:39:0.385:2	./.	./.	0/1:0,33:31:33:1.00:2	0/1:27,25:31:52:0.481:2
chr4	74302071	rs3796678	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,23:32:43:0.535:2	0/1:7,12:32:19:0.632:2	0/1:0,4:30:4:1.00:2	0/1:30,20:32:50:0.400:2	./.	./.	0/1:25,16:30:41:0.390:2	./.	./.	0/1:0,29:31:29:1.00:2	0/1:37,47:31:84:0.560:2
chr4	74302870	rs16849384	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:71,53:33:124:0.427:2	0/1:36,39:32:75:0.520:2	./.	0/1:71,79:33:150:0.527:2	0/1:1,88:32:89:0.989:2	0/1:0,141:32:141:1.00:2	0/1:59,69:33:128:0.539:2	0/1:1,170:32:171:0.994:2	0/1:92,75:34:167:0.449:2	./.	0/1:109,84:33:193:0.435:2
chr4	74318177	rs35920062	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:118,73:30:191:0.382:2	./.	./.	0/1:4,173:30:177:0.977:2	./.	./.	./.
chr4	74318330	rs4235117	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:32:53:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,91:31:92:1.00:2	0/1:0,75:31:75:1.00:2	0/1:1,84:31:85:0.988:2	0/1:1,85:31:86:0.988:2	0/1:0,78:31:78:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,54:32:54:1.00:2
chr4	74361142	rs41265665	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:31:11:0.545:2	./.	./.	./.	./.	./.	./.	./.
chr4	74364955	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:31:112:0.036:2	./.	./.	./.	./.
chr4	74442178	rs144044857	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,30:30:53:0.566:2	./.	./.	./.	./.	./.	./.	./.
chr4	74442349	rs17804499	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,27:33:76:0.355:2	./.	./.	0/1:32,21:33:53:0.396:2	./.	./.
chr4	74447510	rs1247671	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:33,32:33:65:0.492:2	0/1:25,21:32:46:0.457:2	0/1:0,14:32:14:1.00:2	./.	0/1:73,4:29:77:0.052:2	0/1:39,47:32:86:0.547:2	0/1:30,23:33:53:0.434:2	./.	0/1:43,44:33:87:0.506:2	0/1:0,80:33:80:1.00:2	0/1:0,71:32:71:1.00:2
chr4	74447930	rs72649118	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,21:32:45:0.477:2	./.	./.	./.	./.
chr4	74451073	rs12507775	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,40:32:82:0.488:2	0/1:21,22:31:43:0.512:2	./.	0/1:38,42:32:80:0.525:2	0/1:0,52:32:52:1.00:2	0/1:45,43:32:88:0.489:2	0/1:22,27:32:49:0.551:2	0/1:6,86:32:92:0.935:2	0/1:39,46:33:85:0.541:2	./.	./.
chr4	74477451	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:34:164:0.024:2	./.	./.
chr4	74477529	rs72863093	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,54:32:96:0.563:2	./.	./.	./.	./.	./.	./.	./.
chr4	74606370	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:32:139:0.029:2
chr4	74714084	rs16850078	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,95:29:164:0.579:2	0/1:84,75:29:159:0.472:2	./.	./.	./.	./.	0/1:67,68:29:135:0.504:2	./.
chr4	74714098	rs2367288	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,132:32:132:1.00:2	0/1:2,72:32:74:0.973:2	0/1:0,18:31:18:1.00:2	./.	0/1:75,73:31:148:0.493:2	0/1:0,125:31:125:1.00:2	0/1:89,74:32:163:0.454:2	0/1:73,82:32:155:0.529:2	0/1:75,66:32:141:0.468:2	0/1:66,55:32:121:0.455:2	0/1:79,47:32:126:0.373:2
chr4	74719624	rs34446485	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,6:33:66:0.091:2	./.	./.	./.	./.	0/1:49,6:33:55:0.109:2	./.	./.
chr4	74846972	rs62313967	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,7:28:106:0.066:2	0/1:60,7:31:67:0.104:2	./.	./.	./.	0/1:98,9:31:107:0.084:2	./.	./.
chr4	74846990	rs116188786	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:117,13:32:130:0.100:2	0/1:70,19:31:89:0.213:2	./.	./.	./.	0/1:97,21:32:118:0.178:2	./.	./.
chr4	74863997	rs425535	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:33:54:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,10:33:10:1.00:2	0/1:47,33:33:80:0.413:2	0/1:47,51:32:98:0.520:2	0/1:0,52:32:52:1.00:2	0/1:0,114:33:114:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,67:34:67:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,60:33:60:1.00:2
chr4	74904070	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:34:195:0.021:2	./.	./.	./.	./.
chr4	75248434	rs2367707	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:80,78:33:158:0.494:2	0/1:73,60:32:133:0.451:2	0/1:0,23:32:23:1.00:2	0/1:1,170:32:171:0.994:2	0/1:0,145:32:145:1.00:2	0/1:84,70:32:154:0.455:2	0/1:2,179:33:181:0.989:2	./.	0/1:0,184:34:184:1.00:2	0/1:108,69:33:177:0.390:2	0/1:97,98:33:195:0.503:2
chr4	75316115	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,76:31:182:0.418:2	./.	./.	./.	./.	./.
chr4	75485872	rs201406892	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,91:32:191:0.476:2	./.	./.	./.	./.	./.
chr4	75675841	rs11938093	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,7:31:23:0.304:2	0/1:82,88:30:170:0.518:2	0/1:78,63:30:141:0.447:2	./.	./.	0/1:111,82:30:193:0.425:2	./.	./.	./.
chr4	75719517	rs28549760	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.
chr4	75858518	rs75120017	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:20,23:31:43:0.535:2	0/1:15,9:29:24:0.375:2	./.	0/1:31,35:32:66:0.530:2	./.	0/1:53,22:32:75:0.293:2	./.	0/1:46,43:32:89:0.483:2	./.	./.	./.
chr4	75937886	rs144921999	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,57:32:106:0.538:2	0/1:37,28:32:65:0.431:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	75937914	rs35489484	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,96:30:153:0.627:2	./.	./.	./.	./.
chr4	75937971	rs3822109	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:30:6:0.667:2	./.	./.	0/1:45,55:31:100:0.550:2	./.	0/1:54,71:31:125:0.568:2	0/1:49,59:33:108:0.546:2	./.	0/1:3,74:31:77:0.961:2
chr4	75938179	rs3775527	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.	./.	0/1:41,76:31:117:0.650:2	./.	0/1:67,47:32:114:0.412:2	0/1:42,54:31:96:0.563:2	./.	0/1:0,105:32:105:1.00:2
chr4	75938236	rs1062293	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,38:32:82:0.463:2	0/1:19,16:32:35:0.457:2	0/1:4,4:33:8:0.500:2	0/1:36,32:32:68:0.471:2	0/1:42,19:32:61:0.311:2	0/1:0,75:33:75:1.00:2	./.	0/1:3,74:32:77:0.961:2	0/1:31,36:31:67:0.537:2	./.	0/1:4,77:32:81:0.951:2
chr4	76442052	rs34942800	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,17:31:46:0.370:2	./.	./.	./.
chr4	76489345	rs2306175	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,15:30:27:0.556:2	0/1:14,18:32:32:0.563:2	./.	0/1:2,46:32:48:0.958:2	./.	./.	./.
chr4	76489582	rs2306174	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,57:32:151:0.377:2	./.	0/1:69,55:33:124:0.444:2	./.	./.
chr4	76521525	rs56229013	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,21:32:46:0.457:2	./.
chr4	76529095	rs188704685	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,25:30:74:0.338:2	./.	./.	./.
chr4	76572340	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:33:47:0.085:2	./.	./.
chr4	76708222	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:33:88:0.045:2	./.
chr4	76720885	rs13119659	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,129:29:129:1.00:2	0/1:0,59:28:59:1.00:2	0/1:2,17:30:19:0.895:2	0/1:0,145:29:145:1.00:2	0/1:70,81:29:151:0.536:2	0/1:1,131:29:132:0.992:2	0/1:73,69:30:142:0.486:2	0/1:72,89:30:161:0.553:2	0/1:0,119:30:119:1.00:2	0/1:82,57:29:139:0.410:2	0/1:74,77:30:152:0.510:2
chr4	76722353	rs324726	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,156:33:157:0.994:2	0/1:0,109:33:109:1.00:2	0/1:17,14:32:31:0.452:2	0/1:102,80:32:182:0.440:2	0/1:162,7:32:169:0.041:2	0/1:1,181:32:182:0.995:2	0/1:76,79:32:155:0.510:2	0/1:111,61:32:172:0.355:2	0/1:0,184:33:184:1.00:2	0/1:81,96:33:177:0.542:2	0/1:0,173:33:173:1.00:2
chr4	76730195	rs324689	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,56:30:109:0.514:2	./.	./.	0/1:61,59:31:120:0.492:2
chr4	76733459	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:32:106:0.038:2	./.	./.	./.
chr4	76793228	rs1394916	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,104:30:104:1.00:2	0/1:0,48:29:48:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,132:30:132:1.00:2	0/1:0,144:30:144:1.00:2	0/1:0,108:29:108:1.00:2	0/1:0,163:30:163:1.00:2	0/1:0,169:30:169:1.00:2	0/1:0,121:30:121:1.00:2	0/1:0,121:30:121:1.00:2	0/1:0,140:30:140:1.00:2
chr4	76794345	rs6858658	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,110:33:110:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,146:33:146:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,130:32:130:1.00:2	0/1:1,135:33:136:0.993:2	0/1:0,184:33:184:1.00:2	0/1:0,142:33:142:1.00:2	0/1:0,135:33:135:1.00:2	0/1:0,138:33:138:1.00:2
chr4	76805745	rs17220803	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,39:33:103:0.379:2	./.	./.	./.	./.	0/1:86,86:33:172:0.500:2
chr4	76805902	rs1976518	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:32:58:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,60:32:60:1.00:2	0/1:1,60:32:61:0.984:2
chr4	76808078	rs149746739	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:33:137:0.029:2	./.	./.
chr4	76809386	rs7691755	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,91:30:91:1.00:2	0/1:0,65:29:65:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,118:29:118:1.00:2	0/1:1,95:29:96:0.990:2	0/1:0,103:30:103:1.00:2	0/1:0,129:30:129:1.00:2	0/1:0,127:30:127:1.00:2	0/1:0,133:30:133:1.00:2	0/1:0,110:29:110:1.00:2	0/1:0,109:29:109:1.00:2
chr4	76811175	rs28436183	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:83,78:32:161:0.484:2	0/1:45,46:32:91:0.505:2	./.	./.	./.	./.	./.	./.	./.	0/1:99,56:32:155:0.361:2	./.
chr4	76817412	rs11731367	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:78,85:32:163:0.521:2	0/1:43,35:32:78:0.449:2	0/1:18,8:31:26:0.308:2	./.	0/1:2,112:32:114:0.982:2	0/1:98,84:32:182:0.462:2	0/1:96,84:32:180:0.467:2	0/1:2,156:32:158:0.987:2	0/1:0,172:32:172:1.00:2	./.	./.
chr4	76836137	rs6823734	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,45:32:45:1.00:2	0/1:0,23:31:23:1.00:2	./.	0/1:13,22:33:35:0.629:2	0/1:0,29:30:29:1.00:2	0/1:21,19:32:40:0.475:2	0/1:10,7:33:17:0.412:2	0/1:0,24:32:24:1.00:2	0/1:0,37:33:37:1.00:2	0/1:0,21:32:21:1.00:2	./.
chr4	76841145	rs183540556	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,32:32:68:0.471:2	./.	./.	./.
chr4	76857309	rs4859571	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,48:31:72:0.667:2	0/1:36,14:30:50:0.280:2	0/1:43,21:29:64:0.328:2	0/1:38,23:31:61:0.377:2	./.	0/1:57,30:32:87:0.345:2	0/1:38,35:31:73:0.479:2	./.
chr4	76857388	rs4859572	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,8:31:22:0.364:2	0/1:20,7:32:27:0.259:2	0/1:19,17:31:36:0.472:2	0/1:22,7:33:29:0.241:2	./.	0/1:17,8:32:25:0.320:2	0/1:21,10:32:31:0.323:2	./.
chr4	76877285	rs140718662	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,50:33:111:0.450:2	./.	./.
chr4	76878511	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:31:118:0.034:2	./.	./.	./.	./.
chr4	76878688	rs2242470	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,45:30:103:0.437:2	0/1:39,13:29:52:0.250:2	0/1:68,31:30:99:0.313:2	0/1:43,26:31:69:0.377:2	./.	0/1:1,67:31:68:0.985:2	0/1:37,25:31:62:0.403:2	./.
chr4	76878716	rs2242471	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:2,87:32:90:0.978:2	0/1:0,58:32:58:1.00:2	0/1:0,7:33:7:1.00:2	./.	./.	0/1:33,54:32:87:0.621:2	./.	0/1:59,54:32:113:0.478:2	./.	0/1:25,29:32:54:0.537:2	0/1:55,61:32:116:0.526:2
chr4	76878759	rs140119300	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,38:32:94:0.404:2	./.	./.	./.
chr4	76881233	rs34627298	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,21:32:55:0.382:2	./.	./.	./.	./.	./.	0/1:47,38:32:85:0.447:2
chr4	76903147	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,6:32:48:0.125:2	./.	./.	./.	./.	./.	./.	./.
chr4	76903165	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,4:34:41:0.098:2	./.	./.	./.	./.	./.	./.	./.
chr4	76943137	rs4859584	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,184:32:185:0.995:2	0/1:69,49:33:119:0.415:2	0/1:109,69:32:178:0.388:2	0/1:0,79:32:79:1.00:2	0/1:103,77:33:180:0.428:2	0/1:0,158:33:158:1.00:2	0/1:83,69:32:152:0.454:2	0/1:101,73:33:174:0.420:2
chr4	76955914	rs6532111	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,75:32:75:1.00:2	0/1:34,13:31:47:0.277:2	0/1:60,30:32:90:0.333:2	0/1:0,33:31:33:1.00:2	0/1:31,31:31:62:0.500:2	0/1:0,66:32:66:1.00:2	0/1:27,34:32:61:0.557:2	0/1:63,60:32:123:0.488:2
chr4	76956188	rs4241580	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,56:32:59:0.949:2	0/1:34,24:32:58:0.414:2	0/1:32,33:32:65:0.508:2	0/1:3,47:33:50:0.940:2	0/1:46,36:32:82:0.439:2	0/1:0,75:33:75:1.00:2	0/1:31,38:33:69:0.551:2	0/1:45,43:33:88:0.489:2
chr4	77021433	rs6532189	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,47:31:81:0.580:2	0/1:29,32:32:61:0.525:2	0/1:6,6:29:12:0.500:2	0/1:75,40:31:115:0.348:2	0/1:36,21:31:57:0.368:2	./.	./.	0/1:1,86:31:87:0.989:2	0/1:1,106:32:107:0.991:2	0/1:0,55:32:55:1.00:2	./.
chr4	77021915	rs72655511	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:49,35:33:84:0.417:2	0/1:36,15:32:51:0.294:2	0/1:14,3:32:17:0.176:2	./.	./.	./.	./.	0/1:44,41:32:85:0.482:2	./.	0/1:32,41:33:74:0.562:2	./.
chr4	77025136	rs11097233	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,13:31:21:0.619:2	./.	./.	./.	./.	./.	./.	0/1:9,14:32:23:0.609:2
chr4	77033590	rs1128864	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,36:32:85:0.424:2	0/1:38,31:31:69:0.449:2	./.	0/1:33,29:31:62:0.468:2	0/1:43,42:32:85:0.494:2	0/1:0,79:32:79:1.00:2	0/1:31,20:32:51:0.392:2	./.
chr4	77053784	rs200018076	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,12:15:169:0.071:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	77053834	rs61750814	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,59:33:128:0.461:2	0/1:62,39:32:101:0.386:2	0/1:14,5:33:19:0.263:2	0/1:62,66:32:128:0.516:2	./.	./.	./.	0/1:77,62:33:139:0.446:2	./.	0/1:53,41:33:94:0.436:2	0/1:85,89:32:174:0.511:2
chr4	77057502	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr4	77069474	rs35442986	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,93:31:151:0.624:2	./.	./.	./.
chr4	77089557	rs2228380	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,25:31:53:0.472:2	./.	./.	./.
chr4	77177415	rs61740422	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,15:31:20:0.750:2	./.	./.	./.	./.	./.	./.
chr4	77184996	rs61730247	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,29:33:71:0.408:2	./.	./.
chr4	77184997	rs116093445	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,34:32:64:0.531:2	./.	./.	./.
chr4	77192838	rs3733251	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:1,55:33:56:0.982:2	0/1:0,31:32:31:1.00:2	./.	./.	./.	./.	./.	0/1:0,94:32:94:1.00:2	0/1:31,42:33:73:0.575:2	0/1:33,21:32:54:0.389:2	0/1:65,37:33:102:0.363:2
chr4	77192868	rs3733250	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,23:31:55:0.418:2	./.	./.	./.	./.
chr4	77201487	rs1036788	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,23:32:23:1.00:2	0/1:0,21:32:21:1.00:2	./.	0/1:29,17:32:46:0.370:2	0/1:16,15:31:31:0.484:2	0/1:0,36:31:36:1.00:2	0/1:18,6:31:24:0.250:2	0/1:0,44:32:44:1.00:2	0/1:29,11:34:40:0.275:2	0/1:17,12:32:29:0.414:2	0/1:0,37:32:37:1.00:2
chr4	77250102	rs138548683	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:32:118:0.034:2	./.	./.	./.
chr4	77250137	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:32:100:0.040:2
chr4	77255210	rs113022439	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,43:32:94:0.457:2	./.
chr4	77305346	rs17001890	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,55:28:88:0.625:2	0/1:47,27:28:75:0.365:2	0/1:0,87:28:87:1.00:2	./.	./.	./.	./.	0/1:65,70:28:135:0.519:2
chr4	77305566	rs80162610	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,9:30:26:0.346:2	./.	0/1:27,23:31:51:0.460:2
chr4	77324316	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,3:32:33:0.091:2	./.	./.	./.	./.
chr4	77631425	rs3821979	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,48:31:85:0.565:2	0/1:34,38:31:73:0.528:2
chr4	77660162	rs344140	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,33:32:74:0.446:2	0/1:28,25:30:53:0.472:2	0/1:0,7:31:7:1.00:2	0/1:1,68:32:69:0.986:2	0/1:2,61:32:63:0.968:2	0/1:0,77:32:77:1.00:2	0/1:52,34:32:86:0.395:2	0/1:4,111:32:115:0.965:2	0/1:54,42:33:96:0.438:2	0/1:51,14:31:65:0.215:2	0/1:0,83:31:83:1.00:2
chr4	77660299	rs61999292	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:30:11:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	77660731	rs344141	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,19:29:47:0.404:2	0/1:11,23:30:34:0.676:2	0/1:0,4:28:4:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,43:29:43:1.00:2	0/1:31,29:29:60:0.483:2	0/1:1,57:29:58:0.983:2	0/1:27,17:30:44:0.386:2	./.	0/1:18,35:29:53:0.660:2
chr4	77662125	rs36036308	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,12:32:19:0.632:2	./.	./.	./.	./.	0/1:0,6:32:6:1.00:2	./.	./.
chr4	77662486	rs71607374	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,17:31:49:0.347:2	./.	./.	./.	./.	0/1:18,22:30:40:0.550:2	./.	./.
chr4	77675505	rs3733242	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,78:32:160:0.488:2	./.	./.	0/1:98,88:32:186:0.473:2	0/1:104,87:32:191:0.455:2	0/1:106,70:33:176:0.398:2	0/1:78,60:32:138:0.435:2	0/1:65,67:32:132:0.508:2
chr4	77675925	rs61741104	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,73:31:150:0.487:2	./.	./.	./.	./.	./.	./.
chr4	77700253	rs61741100	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,28:32:71:0.394:2	./.	./.	./.
chr4	77817362	rs2703131	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:2,49:32:51:0.961:2	./.	0/1:48,47:32:95:0.495:2	0/1:66,66:31:132:0.500:2	./.	0/1:6,128:32:134:0.955:2	./.	0/1:51,31:32:82:0.378:2	0/1:58,55:31:113:0.487:2	0/1:41,55:31:96:0.573:2
chr4	77817874	rs2703130	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,18:30:39:0.462:2	./.	./.	./.	./.	0/1:18,27:30:45:0.600:2	0/1:11,11:32:22:0.500:2	0/1:26,20:29:46:0.435:2
chr4	77818548	rs2703129	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,5:32:5:1.00:2	./.	0/1:0,4:31:4:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr4	77941741	rs200976530	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,5:23:74:0.068:2	./.	./.	./.	0/1:51,7:28:58:0.121:2
chr4	78079772	rs4150052	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:32:8:0.625:2	./.	./.	./.	0/1:36,30:30:66:0.455:2	./.	./.	./.	./.
chr4	78082086	rs4150063	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:32:8:0.625:2	./.	./.	./.	./.	0/1:5,6:33:11:0.545:2	./.	./.
chr4	78641624	rs376684662	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,39:32:193:0.202:2	0/1:141,41:30:182:0.225:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,43:31:190:0.226:2
chr4	78641637	rs199510109	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,23:11:176:0.133:2	0/1:142,20:17:162:0.123:2	./.
chr4	78641756	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,6:30:178:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	78647494	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:126,5:31:131:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr4	78650078	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,5:33:199:0.025:2	./.	./.	./.
chr4	78650083	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:31:160:0.025:2	0/1:193,5:33:198:0.025:2	./.	./.	./.
chr4	78652647	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,3:32:43:0.070:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	78665939	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:32:118:0.034:2
chr4	78669454	rs6855336	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,5:32:5:1.00:2	0/1:0,11:32:11:1.00:2	./.	0/1:0,15:33:15:1.00:2	./.	0/1:0,9:33:9:1.00:2	./.	0/1:2,3:35:5:0.600:2	0/1:0,10:35:10:1.00:2	0/1:0,3:35:3:1.00:2	0/1:12,12:33:24:0.500:2
chr4	78694257	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,3:34:65:0.046:2	./.	./.	./.	./.	./.	./.
chr4	78792943	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.	./.
chr4	78806415	rs74550505	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,21:31:41:0.512:2	./.	./.	./.	./.	./.	./.
chr4	78870940	rs4859513	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,27:31:27:1.00:2	0/1:10,6:31:16:0.375:2	0/1:21,11:31:32:0.344:2	0/1:18,11:32:29:0.379:2	0/1:24,20:31:45:0.455:2	./.	0/1:18,10:31:28:0.357:2	0/1:20,22:31:42:0.524:2
chr4	78987157	rs4859905	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,82:31:176:0.466:2	0/1:92,91:32:183:0.497:2	./.	./.	./.	0/1:93,81:32:174:0.466:2	0/1:81,73:32:154:0.474:2	0/1:1,158:32:159:0.994:2	./.	0/1:89,81:31:170:0.476:2	0/1:102,86:32:188:0.457:2
chr4	79186171	rs2867014	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,70:31:70:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,44:32:44:1.00:2	0/1:1,61:31:62:0.984:2
chr4	79188584	rs61999335	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,58:33:125:0.464:2	./.	./.	./.	./.	./.	./.	./.
chr4	79199830	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,4:32:89:0.045:2	./.	./.	./.	./.	./.	./.	./.
chr4	79205699	rs12504081	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:84,75:32:159:0.472:2	0/1:110,79:31:189:0.418:2	./.	0/1:93,81:30:174:0.466:2	./.	0/1:98,81:31:179:0.453:2	./.	0/1:110,81:31:191:0.424:2	0/1:1,180:32:181:0.994:2	./.	./.
chr4	79238620	rs147869493	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,40:32:84:0.476:2	./.	./.	./.	./.	./.	./.
chr4	79238649	rs345514	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,57:28:60:0.950:2	./.	0/1:32,31:28:63:0.492:2	./.	0/1:48,49:29:97:0.505:2	0/1:0,62:29:62:1.00:2	./.	0/1:0,51:28:51:1.00:2
chr4	79240063	rs345513	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,44:33:90:0.489:2	./.	0/1:43,47:33:90:0.522:2	./.	0/1:59,52:33:111:0.468:2	0/1:0,91:33:91:1.00:2	./.	./.
chr4	79284694	rs6835769	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,69:30:69:1.00:2	./.	0/1:25,17:30:42:0.405:2	0/1:34,34:30:68:0.500:2	0/1:37,21:31:58:0.362:2	0/1:0,69:31:69:1.00:2	0/1:30,18:30:48:0.375:2	0/1:22,18:31:40:0.450:2
chr4	79300899	rs35774552	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,84:32:183:0.462:2
chr4	79300993	rs12512164	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,78:31:79:0.987:2	./.	0/1:44,58:31:103:0.569:2	0/1:38,26:31:64:0.406:2	0/1:68,68:32:136:0.500:2	0/1:0,95:32:95:1.00:2	./.	0/1:68,44:32:112:0.393:2
chr4	79343111	rs78575519	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,18:33:25:0.720:2	./.
chr4	79350352	rs201188262	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,32:32:68:0.471:2	./.
chr4	79367940	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:35:88:0.045:2	./.	./.
chr4	79385719	rs6851427	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:41,34:33:75:0.453:2	0/1:21,13:33:34:0.382:2	./.	0/1:0,81:33:81:1.00:2	./.	0/1:46,27:31:73:0.370:2	0/1:1,85:33:86:0.988:2	0/1:44,53:32:97:0.546:2	0/1:1,75:33:76:0.987:2	0/1:41,27:32:68:0.397:2	0/1:38,29:32:67:0.433:2
chr4	79387442	rs7660664	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:89,95:31:184:0.516:2	0/1:55,50:31:105:0.476:2	./.	./.	./.	./.	./.	0/1:105,85:31:190:0.447:2	./.	0/1:108,74:32:182:0.407:2	./.
chr4	79387464	rs7684722	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,181:32:181:1.00:2	0/1:0,123:32:123:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,173:33:173:1.00:2	0/1:0,151:32:151:1.00:2	0/1:1,172:33:173:0.994:2	0/1:0,180:32:180:1.00:2	0/1:2,169:33:171:0.988:2	0/1:0,171:34:171:1.00:2	0/1:0,174:33:175:1.00:2	0/1:0,181:32:181:1.00:2
chr4	79387586	rs34840208	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,19:32:19:1.00:2	./.	0/1:1,95:31:96:0.990:2	0/1:68,55:32:123:0.447:2	./.	./.	./.	./.	0/1:85,56:32:141:0.397:2
chr4	79400868	rs11098194	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:49,42:32:91:0.462:2	0/1:33,25:32:58:0.431:2	./.	0/1:2,98:31:100:0.980:2	./.	0/1:70,64:31:134:0.478:2	0/1:8,105:32:113:0.929:2	0/1:59,74:32:133:0.556:2	0/1:0,108:33:108:1.00:2	0/1:34,55:32:89:0.618:2	0/1:54,47:32:101:0.465:2
chr4	79430038	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,64:32:123:0.520:2	./.	./.	./.	./.
chr4	79432455	rs3749488	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,20:29:20:1.00:2	0/1:100,79:30:179:0.441:2	0/1:2,136:29:138:0.986:2	0/1:96,80:29:176:0.455:2	./.	./.	./.	./.	0/1:81,90:29:171:0.526:2
chr4	79434561	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:30:107:0.037:2	./.	./.	./.
chr4	79437155	rs3749487	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:51,62:32:113:0.549:2	0/1:38,34:31:72:0.472:2	./.	./.	./.	./.	./.	0/1:64,44:32:108:0.407:2	./.	0/1:90,63:32:153:0.412:2	./.
chr4	79443850	rs931606	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:31:8:1.00:2	0/1:26,21:32:47:0.447:2	0/1:1,32:32:33:0.970:2	0/1:26,20:32:46:0.435:2	./.	./.	./.	./.	0/1:27,17:33:44:0.386:2
chr4	79447763	rs34670941	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:63,55:32:118:0.466:2	0/1:56,33:33:89:0.371:2	./.	./.	./.	./.	./.	0/1:71,79:33:150:0.527:2	./.	0/1:84,48:33:133:0.364:2	./.
chr4	79455714	rs4975070	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,22:29:61:0.367:2	0/1:20,17:30:37:0.459:2	0/1:0,5:33:5:1.00:2	0/1:39,37:31:76:0.487:2	0/1:2,38:31:40:0.950:2	0/1:38,22:29:60:0.367:2	./.	0/1:36,36:31:72:0.500:2	./.	0/1:37,29:31:66:0.439:2	0/1:64,30:31:94:0.319:2
chr4	79455733	rs4975139	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,30:32:70:0.429:2	0/1:19,18:32:37:0.486:2	0/1:0,4:32:4:1.00:2	0/1:35,36:31:71:0.507:2	0/1:2,29:30:31:0.935:2	0/1:36,18:30:54:0.333:2	./.	0/1:33,26:31:59:0.441:2	./.	0/1:38,24:30:62:0.387:2	0/1:53,31:32:84:0.369:2
chr4	79475603	rs45567932	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,4:32:10:0.400:2	0/1:2,6:32:8:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	79507411	rs71611026	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,17:33:40:0.425:2	./.	./.
chr4	79531202	rs5950	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,10:31:24:0.417:2	./.	./.	./.	./.
chr4	79792163	rs2114202	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,8:29:16:0.500:2	0/1:5,3:30:8:0.375:2	./.	./.	./.	./.
chr4	79831772	rs182929460	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,40:30:71:0.563:2	./.	./.	./.	./.	./.
chr4	79832706	rs12507099	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,51:32:109:0.468:2	./.	./.
chr4	79832712	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:119,4:30:123:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr4	79833057	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:187,6:32:194:0.031:2	./.	./.	0/1:189,7:32:196:0.036:2	./.	./.	./.	./.
chr4	79833077	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:189,6:31:195:0.031:2	./.	./.	0/1:190,7:32:197:0.036:2	./.	./.	./.	./.
chr4	79845007	rs13108247	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:33:65:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,10:32:10:1.00:2	0/1:41,35:31:76:0.461:2	0/1:0,44:32:44:1.00:2	0/1:45,18:32:63:0.286:2	0/1:1,40:32:41:0.976:2	0/1:44,42:32:86:0.488:2	0/1:0,90:33:90:1.00:2	0/1:34,32:32:66:0.485:2	0/1:0,127:33:127:1.00:2
chr4	80329109	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,7:34:166:0.042:2	./.	./.	./.	./.
chr4	80329323	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,4:32:24:0.167:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	80329343	rs6837906	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,9:29:21:0.429:2	./.	0/1:6,5:27:11:0.455:2	./.	./.	./.	./.
chr4	80828555	rs61048419	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,39:31:77:0.506:2	./.	0/1:23,17:31:40:0.425:2	0/1:20,19:32:39:0.487:2	0/1:35,23:32:58:0.397:2	./.	./.	./.
chr4	80898808	rs35798108	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,35:32:60:0.583:2	./.	./.	./.	./.
chr4	80905990	rs12647691	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:25,20:32:45:0.444:2	0/1:24,13:32:37:0.351:2	0/1:0,7:32:7:1.00:2	./.	0/1:0,44:32:44:1.00:2	0/1:22,20:31:42:0.476:2	0/1:24,24:32:48:0.500:2	0/1:44,20:32:64:0.313:2	0/1:39,21:34:60:0.350:2	0/1:0,36:32:36:1.00:2	0/1:50,29:33:79:0.367:2
chr4	80905991	rs72653288	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,24:27:48:0.500:2	./.	./.	./.	./.
chr4	80957195	rs373672335	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,14:11:82:0.171:2
chr4	80977078	rs4594664	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,14:35:38:0.368:2	0/1:10,15:33:25:0.600:2	./.	0/1:24,14:33:38:0.368:2	0/1:14,11:32:25:0.440:2	0/1:0,38:33:38:1.00:2	./.	./.	0/1:0,43:34:43:1.00:2	0/1:0,22:33:22:1.00:2	0/1:0,64:34:64:1.00:2
chr4	81123378	rs142234659	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,13:29:26:0.500:2	./.	0/1:11,19:30:30:0.633:2	0/1:10,9:29:19:0.474:2	./.	./.
chr4	81504298	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:123,4:32:127:0.031:2	./.	./.	./.	./.	./.	./.
chr4	81884722	rs1052325	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:32:81:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,80:32:80:1.00:2	0/1:2,78:32:80:0.975:2	0/1:93,63:31:156:0.404:2	0/1:2,69:32:71:0.972:2	0/1:0,80:32:80:1.00:2	0/1:1,112:33:113:0.991:2	0/1:0,95:32:96:1.00:2	0/1:0,113:33:113:1.00:2
chr4	81967150	rs3733549	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	./.	0/1:12,9:32:21:0.429:2	./.	./.	0/1:8,11:32:19:0.579:2	./.
chr4	81967188	rs6831040	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:32:25:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,30:31:30:1.00:2
chr4	81967516	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,4:33:56:0.074:2	./.	./.	./.	./.	./.	./.	./.
chr4	82013615	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,5:31:173:0.029:2	./.	./.	./.
chr4	82013619	rs200706162	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,6:34:170:0.036:2	./.	./.	./.
chr4	82025509	rs17005053	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:32:170:0.024:2	./.	./.	./.
chr4	82092870	rs17005080	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:32:7:0.571:2	./.	0/1:28,15:33:43:0.349:2	./.	./.	./.	./.	./.	./.
chr4	82096035	rs145769252	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,63:31:165:0.382:2	./.	./.	./.
chr4	82126121	rs17484474	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,79:33:161:0.491:2	./.	./.	./.	./.	./.	./.	./.
chr4	82355804	rs34211143	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,42:30:88:0.477:2	./.
chr4	83347266	rs79373393	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,55:30:104:0.529:2	./.	./.	./.	./.	./.	./.	./.
chr4	83348652	rs61729822	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,66:30:123:0.537:2	./.	./.	./.	./.	./.	./.	./.
chr4	83348702	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:33:133:0.030:2	./.
chr4	83582064	rs3733228	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:45,27:32:72:0.375:2	0/1:26,21:31:47:0.447:2	./.	./.	0/1:36,25:31:61:0.410:2	0/1:39,51:31:90:0.567:2	./.	./.	./.	0/1:38,27:32:65:0.415:2	0/1:52,39:31:91:0.429:2
chr4	83582083	rs17006063	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,46:33:107:0.430:2	./.	./.	./.	./.	./.	./.	./.
chr4	83582211	rs3733227	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,39:32:39:1.00:2	0/1:0,27:32:27:1.00:2	./.	./.	0/1:17,19:32:36:0.528:2	0/1:0,38:31:38:1.00:2	0/1:20,11:32:31:0.355:2	0/1:21,12:32:33:0.364:2	./.	0/1:0,49:33:49:1.00:2	0/1:19,23:31:42:0.548:2
chr4	83778839	rs7658703	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,5:32:14:0.357:2	0/1:9,13:32:22:0.591:2	./.	./.	./.	./.	0/1:17,20:31:37:0.541:2
chr4	83788344	rs2045478	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:31:102:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,100:30:100:1.00:2	0/1:0,129:31:129:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,124:31:124:1.00:2	0/1:0,153:32:153:1.00:2	0/1:0,123:31:123:1.00:2	0/1:0,167:31:167:1.00:2
chr4	83795806	rs10025654	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,22:33:41:0.550:2	0/1:13,15:33:28:0.536:2	0/1:0,5:31:5:1.00:2	0/1:32,26:32:58:0.448:2	0/1:33,22:32:55:0.400:2	./.	0/1:27,24:32:51:0.471:2	0/1:2,84:33:86:0.977:2	0/1:1,65:33:66:0.985:2	./.	./.
chr4	83829011	rs11731186	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,74:29:157:0.471:2	./.	./.	./.	./.	./.
chr4	83838217	rs1031639	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:29:83:1.00:2	0/1:0,58:30:58:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,118:29:118:1.00:2	0/1:0,64:29:64:1.00:2	0/1:1,91:29:92:0.989:2	0/1:0,77:29:77:1.00:2	0/1:1,119:30:121:0.992:2	0/1:0,130:30:130:1.00:2	0/1:0,79:30:79:1.00:2	0/1:0,131:30:132:1.00:2
chr4	83838262	rs897945	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,38:31:69:0.551:2	0/1:18,19:32:37:0.514:2	0/1:0,4:30:4:1.00:2	0/1:40,31:31:71:0.437:2	0/1:37,4:33:41:0.098:2	./.	0/1:1,29:32:30:0.967:2	0/1:46,30:32:76:0.395:2	0/1:1,62:33:63:0.984:2	./.	./.
chr4	83839799	rs6535411	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,9:33:9:1.00:2	0/1:1,60:33:61:0.984:2	0/1:0,47:32:47:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,46:34:46:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,84:33:84:1.00:2
chr4	83900043	rs6535422	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:33:51:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,45:34:45:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,78:33:78:1.00:2
chr4	83989647	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,22:31:62:0.355:2	./.	./.	./.	./.	./.	./.	./.
chr4	84028996	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:29:52:0.077:2	./.	./.	./.	./.	./.
chr4	84188850	rs1129617	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,67:30:150:0.447:2	./.	./.	0/1:76,68:31:144:0.472:2	0/1:55,76:32:131:0.580:2	./.	./.
chr4	84191031	rs6535454	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,64:32:112:0.571:2	0/1:28,21:32:49:0.429:2	0/1:0,10:31:10:1.00:2	0/1:0,92:32:92:1.00:2	0/1:46,39:31:85:0.459:2	0/1:0,97:32:97:1.00:2	0/1:0,60:31:60:1.00:2	0/1:55,57:32:112:0.509:2	./.	0/1:0,84:32:84:1.00:2	0/1:0,103:32:103:1.00:2
chr4	84230033	rs139839221	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,58:30:108:0.537:2	./.	./.	./.	./.	./.	./.
chr4	84230619	rs11099592	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,60:33:61:0.984:2	0/1:0,40:33:40:1.00:2	0/1:0,4:32:4:1.00:2	0/1:37,27:33:64:0.422:2	0/1:34,17:32:51:0.333:2	./.	0/1:29,12:33:41:0.293:2	0/1:28,30:33:58:0.517:2	0/1:58,33:33:91:0.363:2	0/1:0,48:33:48:1.00:2	0/1:99,48:33:147:0.327:2
chr4	84364751	rs7665103	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:18,36:32:54:0.667:2	0/1:11,13:32:24:0.542:2	0/1:0,5:30:5:1.00:2	./.	./.	./.	0/1:23,15:32:38:0.395:2	0/1:0,38:31:38:1.00:2	./.	0/1:0,54:31:54:1.00:2	0/1:38,41:31:79:0.519:2
chr4	84370091	rs13141136	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:30,27:32:57:0.474:2	0/1:15,11:31:26:0.423:2	0/1:0,11:32:11:1.00:2	./.	./.	./.	0/1:15,21:33:36:0.583:2	0/1:3,60:32:63:0.952:2	./.	0/1:2,50:32:52:0.962:2	0/1:31,54:31:85:0.635:2
chr4	84374480	rs1494961	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:51,44:32:95:0.463:2	0/1:37,37:32:74:0.500:2	0/1:0,13:32:13:1.00:2	./.	./.	0/1:65,49:31:115:0.430:2	0/1:59,47:31:106:0.443:2	0/1:0,93:31:93:1.00:2	0/1:71,85:32:156:0.545:2	0/1:0,125:32:125:1.00:2	0/1:90,92:32:182:0.505:2
chr4	84376743	rs6831595	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,45:30:45:1.00:2	0/1:0,26:30:26:1.00:2	./.	0/1:0,41:29:41:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,29:29:29:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,45:31:45:1.00:2
chr4	84380955	rs12505955	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:86,65:32:151:0.430:2	0/1:49,31:32:80:0.388:2	0/1:0,10:31:10:1.00:2	./.	./.	./.	0/1:74,36:31:110:0.327:2	0/1:2,82:31:84:0.976:2	./.	0/1:0,101:32:101:1.00:2	0/1:88,53:32:141:0.376:2
chr4	84383735	rs13125836	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,95:32:197:0.485:2	0/1:83,66:32:150:0.443:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	84383810	rs12642536	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:113,81:31:194:0.418:2	0/1:84,67:31:152:0.444:2	0/1:1,34:30:35:0.971:2	./.	./.	./.	0/1:112,82:31:194:0.423:2	0/1:3,187:31:190:0.984:2	./.	0/1:1,184:31:185:0.995:2	0/1:120,67:31:187:0.358:2
chr4	84390250	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,5:32:93:0.054:2	./.
chr4	84519828	rs62303973	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,73:32:151:0.483:2	0/1:35,31:32:66:0.470:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	85414484	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:28:70:0.057:2
chr4	85414643	rs147737825	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,28:32:57:0.491:2	0/1:18,17:32:35:0.486:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	85600238	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,4:31:66:0.061:2	./.	./.	./.	./.	./.	./.	./.
chr4	85662976	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:31:136:0.029:2	./.	./.	./.
chr4	85693988	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:141,4:31:145:0.028:2	./.	./.	./.	./.	./.	./.
chr4	85708827	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,4:31:114:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr4	85762385	rs2046402	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,19:32:19:1.00:2	0/1:0,18:33:18:1.00:2	./.	0/1:10,16:33:26:0.615:2	0/1:0,23:32:23:1.00:2	0/1:12,12:32:24:0.500:2	./.	./.	./.	./.	0/1:17,12:32:29:0.414:2
chr4	86844835	rs6824722	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:34:5:0.600:2	0/1:44,30:33:74:0.405:2	0/1:36,29:32:65:0.446:2	0/1:31,24:32:55:0.436:2	./.	./.	0/1:55,3:34:58:0.052:2	0/1:27,21:33:48:0.438:2	0/1:0,62:32:62:1.00:2
chr4	86915848	rs10003909	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,7:28:9:0.778:2	0/1:43,63:28:106:0.594:2	0/1:46,25:28:71:0.352:2	0/1:47,40:28:87:0.460:2	./.	./.	./.	0/1:47,50:29:97:0.515:2	0/1:55,44:29:99:0.444:2
chr4	86915923	rs11547776	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:32:6:1.00:2	0/1:32,39:31:71:0.549:2	0/1:39,22:31:61:0.361:2	0/1:34,23:31:57:0.404:2	./.	./.	./.	0/1:25,25:30:50:0.500:2	0/1:36,31:32:67:0.463:2
chr4	86916056	rs35521695	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,20:31:48:0.417:2	./.	./.	./.	./.
chr4	86952590	rs13103861	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:7,97:33:104:0.933:2	0/1:2,43:32:45:0.956:2	0/1:7,8:32:15:0.533:2	0/1:66,47:32:113:0.416:2	0/1:46,40:31:86:0.465:2	./.	./.	./.	0/1:54,60:33:114:0.526:2	./.	0/1:68,78:32:146:0.534:2
chr4	87024409	rs28529458	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:27:47:1.00:2	0/1:0,20:27:20:1.00:2	0/1:2,4:28:6:0.667:2	0/1:30,29:27:59:0.492:2	0/1:23,20:27:43:0.465:2	0/1:0,43:28:43:1.00:2	./.	0/1:21,33:27:54:0.611:2	0/1:25,22:29:47:0.468:2	0/1:25,16:26:41:0.390:2	0/1:39,32:28:71:0.451:2
chr4	87643511	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,86:31:186:0.462:2	0/1:72,57:31:129:0.442:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	87643538	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:32:174:0.023:2	./.	./.	./.	./.
chr4	87684031	rs710832	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,41:30:93:0.446:2	0/1:31,31:29:62:0.500:2	0/1:0,11:29:11:1.00:2	0/1:75,55:29:130:0.423:2	0/1:39,35:30:74:0.473:2	0/1:0,80:30:80:1.00:2	0/1:0,73:29:73:1.00:2	0/1:75,49:28:124:0.395:2	0/1:71,47:30:118:0.398:2	0/1:43,43:30:86:0.500:2	0/1:54,36:29:90:0.400:2
chr4	87685796	rs10033029	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,36:33:79:0.456:2	./.	./.	./.	./.	0/1:33,64:32:97:0.660:2
chr4	87690998	rs2230600	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:19,25:34:44:0.568:2	0/1:12,11:33:23:0.478:2	./.	0/1:26,13:32:39:0.333:2	./.	./.	0/1:27,15:31:42:0.357:2	0/1:25,21:33:46:0.457:2	./.	0/1:11,12:34:23:0.522:2	./.
chr4	87692393	rs12500797	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,62:30:150:0.413:2	./.	./.	./.	./.	0/1:94,94:32:188:0.500:2
chr4	87693997	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,22:32:38:0.579:2	./.
chr4	87696470	rs12507034	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,41:31:93:0.446:2	./.	./.	./.	./.	0/1:61,33:30:94:0.351:2
chr4	87696476	rs12499471	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,33:31:82:0.402:2	./.	./.	./.	./.	0/1:58,34:32:92:0.370:2
chr4	87703430	rs9993838	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,32:31:94:0.344:2	./.	./.	./.	./.	0/1:59,59:32:118:0.500:2
chr4	87706506	rs989902	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,40:32:73:0.548:2	0/1:22,25:33:47:0.532:2	0/1:8,7:33:15:0.467:2	0/1:47,42:32:89:0.472:2	./.	0/1:66,50:32:116:0.431:2	0/1:47,49:32:96:0.510:2	0/1:56,29:32:85:0.341:2	./.	0/1:36,32:33:68:0.471:2	0/1:51,38:32:89:0.427:2
chr4	87706520	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,29:32:105:0.276:2	./.	./.
chr4	87729051	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:34:102:0.039:2	./.	./.
chr4	87730980	rs61730641	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,76:30:185:0.411:2	./.	./.	./.	./.
chr4	87732221	rs182154840	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,30:31:78:0.385:2	./.	./.	./.	./.	./.	./.
chr4	87769929	rs13106574	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,16:32:47:0.340:2	./.	0/1:27,25:30:52:0.481:2	./.	./.	./.	./.	./.
chr4	87809020	rs72613147	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,35:32:64:0.547:2	./.	./.	./.	./.	0/1:63,35:33:98:0.357:2
chr4	87809025	rs28664715	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,18:31:53:0.340:2	./.	./.	./.	./.	0/1:22,35:31:57:0.614:2	./.
chr4	87809387	rs1550931	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:30:42:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,4:29:4:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,58:29:58:1.00:2	0/1:0,60:29:60:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,64:29:64:1.00:2
chr4	87968524	rs2230858	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,34:30:77:0.442:2	./.	./.	./.	./.	./.
chr4	88036182	rs201122599	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,8:28:64:0.125:2	./.	0/1:10,5:28:15:0.333:2	0/1:91,21:27:112:0.188:2	0/1:108,15:25:123:0.122:2	0/1:72,18:26:90:0.200:2	0/1:107,15:23:122:0.123:2	0/1:98,31:26:129:0.240:2	0/1:79,14:24:93:0.151:2	0/1:56,14:27:70:0.200:2	0/1:78,18:29:96:0.188:2
chr4	88048863	rs62306540	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,19:33:78:0.244:2	./.	0/1:2,45:32:47:0.957:2	./.	./.	./.	./.	./.
chr4	88099739	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:33:65:0.062:2	./.	./.
chr4	88258483	rs9991501	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,162:29:162:1.00:2	0/1:0,72:29:72:1.00:2	0/1:1,6:30:7:0.857:2	0/1:0,129:29:129:1.00:2	0/1:0,91:28:91:1.00:2	0/1:0,131:28:131:1.00:2	0/1:0,61:28:61:1.00:2	0/1:0,117:29:117:1.00:2	0/1:82,62:30:144:0.431:2	0/1:0,119:29:119:1.00:2	0/1:83,59:29:142:0.415:2
chr4	88278484	rs34025653	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:35:169:0.024:2	./.	./.
chr4	88293887	rs6531985	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,35:31:63:0.556:2	0/1:37,31:32:68:0.456:2	./.	0/1:60,42:32:102:0.412:2	0/1:37,35:31:72:0.486:2	0/1:71,44:31:115:0.383:2	0/1:68,43:31:111:0.387:2	./.	./.	0/1:0,79:30:79:1.00:2	./.
chr4	88375527	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,4:32:41:0.098:2	./.	./.	./.	./.	./.	./.	./.
chr4	88400603	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:32:184:0.022:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	88401589	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:32:95:0.042:2	./.	./.	./.	./.
chr4	88401616	rs9933	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,66:32:66:1.00:2	0/1:0,41:31:41:1.00:2	./.	0/1:51,56:32:107:0.523:2	0/1:23,30:32:53:0.566:2	0/1:0,71:31:71:1.00:2	0/1:0,68:32:68:1.00:2	0/1:53,24:32:77:0.312:2	0/1:47,32:33:79:0.405:2	0/1:0,80:32:80:1.00:2	./.
chr4	88403609	rs72654103	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,26:32:60:0.433:2
chr4	88412000	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:128:0.031:2
chr4	88412806	rs1130643	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:38,57:33:95:0.600:2	0/1:37,34:33:71:0.479:2	0/1:5,4:32:9:0.444:2	./.	0/1:98,47:32:145:0.324:2	./.	./.	0/1:89,91:32:180:0.506:2	./.	0/1:58,65:33:123:0.528:2	./.
chr4	88415636	rs1049544	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:98,88:33:186:0.473:2	0/1:55,45:32:100:0.450:2	0/1:7,10:33:17:0.588:2	./.	0/1:88,76:32:164:0.463:2	0/1:1,169:31:170:0.994:2	0/1:95,98:32:193:0.508:2	0/1:101,97:31:198:0.490:2	./.	0/1:0,140:32:140:1.00:2	./.
chr4	88415646	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2	./.	./.	./.	./.
chr4	88416188	rs13051	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:100,85:31:185:0.459:2	0/1:69,40:31:109:0.367:2	0/1:17,10:31:27:0.370:2	./.	0/1:118,79:31:197:0.401:2	0/1:3,190:31:193:0.984:2	0/1:117,73:31:190:0.384:2	0/1:122,75:31:197:0.381:2	./.	0/1:0,191:31:191:1.00:2	./.
chr4	88416223	rs8342	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,146:30:146:1.00:2	0/1:3,102:30:105:0.971:2	0/1:18,12:29:30:0.400:2	0/1:79,56:30:135:0.415:2	0/1:85,60:30:145:0.414:2	0/1:2,151:30:153:0.987:2	0/1:1,155:30:156:0.994:2	0/1:96,45:29:141:0.319:2	0/1:73,55:31:128:0.430:2	0/1:1,132:30:133:0.992:2	./.
chr4	88533540	rs36094464	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,55:31:134:0.410:2	./.	./.	0/1:91,45:32:136:0.331:2	0/1:63,74:31:137:0.540:2	./.	./.	./.
chr4	88534065	rs3750025	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:33:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	88534235	rs2736982	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,48:30:112:0.429:2	0/1:35,22:29:57:0.386:2	0/1:7,5:30:12:0.417:2	0/1:71,46:30:117:0.393:2	0/1:0,87:30:87:1.00:2	./.	0/1:53,36:31:89:0.404:2	0/1:1,107:30:108:0.991:2	0/1:61,58:31:119:0.487:2	0/1:45,42:30:87:0.483:2	0/1:80,59:30:139:0.424:2
chr4	88535500	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:160,9:30:169:0.053:2	0/1:179,9:27:188:0.048:2	./.	0/1:176,5:32:181:0.028:2	./.	0/1:183,4:32:188:0.021:2	./.	0/1:182,6:32:189:0.032:2	0/1:183,6:33:189:0.032:2	./.	0/1:166,13:33:179:0.073:2
chr4	88535527	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:176,5:31:181:0.028:2	0/1:150,8:30:158:0.051:2	./.	./.	./.	./.	./.	./.	0/1:186,5:32:191:0.026:2	./.	0/1:176,10:29:186:0.054:2
chr4	88535623	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:161,13:29:174:0.075:2	0/1:154,6:31:160:0.038:2	./.	0/1:180,6:31:186:0.032:2	./.	0/1:174,11:27:185:0.059:2	./.	0/1:179,6:31:185:0.032:2	0/1:171,9:31:180:0.050:2	0/1:162,7:31:169:0.041:2	0/1:153,12:31:165:0.073:2
chr4	88535653	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:166,6:29:172:0.035:2	./.	./.	0/1:186,5:29:191:0.026:2	./.	0/1:182,9:33:192:0.047:2	0/1:187,4:33:191:0.021:2	./.	0/1:186,7:30:193:0.036:2	0/1:176,6:32:182:0.033:2	0/1:170,9:33:179:0.050:2
chr4	88535785	rs116512524	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,81:31:155:0.523:2	./.	./.	./.	0/1:90,88:32:178:0.494:2	./.	./.	0/1:102,75:32:177:0.424:2
chr4	88535830	rs202057495	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,17:31:95:0.181:2	./.	./.	./.	./.	0/1:118,4:31:122:0.033:2	./.
chr4	88535831	rs200378069	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,17:31:93:0.183:2	./.	./.	./.	./.	./.	./.
chr4	88535832	rs201553143	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,17:31:93:0.183:2	./.	./.	./.	./.	./.	./.
chr4	88535868	rs199719429	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:124,10:32:134:0.075:2	0/1:106,17:30:123:0.138:2	./.	./.	0/1:114,24:30:138:0.174:2	./.	./.	./.	0/1:119,12:33:131:0.092:2	0/1:118,12:32:130:0.092:2	./.
chr4	88535869	rs200233307	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:125,10:30:135:0.074:2	0/1:105,18:30:123:0.146:2	./.	./.	0/1:115,23:29:138:0.167:2	./.	./.	./.	0/1:121,12:30:133:0.090:2	0/1:119,12:30:131:0.092:2	./.
chr4	88536028	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:125,14:29:139:0.101:2	0/1:79,6:31:85:0.071:2	./.	./.	0/1:148,8:30:156:0.051:2	./.	./.	./.	0/1:132,11:32:143:0.077:2	./.	./.
chr4	88536029	rs150132251	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:106,36:30:142:0.254:2	0/1:65,21:29:86:0.244:2	./.	./.	0/1:111,48:29:159:0.302:2	./.	./.	./.	0/1:104,37:32:141:0.262:2	./.	./.
chr4	88536031	rs147160873	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:106,34:31:140:0.243:2	0/1:65,21:31:86:0.244:2	./.	./.	0/1:103,48:30:151:0.318:2	./.	./.	./.	0/1:107,36:31:143:0.252:2	./.	./.
chr4	88536050	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,71:28:172:0.413:2	./.	./.	./.	./.
chr4	88536227	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,5:29:170:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	88536362	rs116385272	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:100,80:33:180:0.444:2	0/1:95,87:32:182:0.478:2	0/1:31,18:32:49:0.367:2	0/1:98,86:32:184:0.467:2	0/1:0,185:32:185:1.00:2	./.	./.	0/1:87,102:32:189:0.540:2	0/1:102,79:33:181:0.436:2	0/1:98,82:33:180:0.456:2	0/1:109,69:32:178:0.388:2
chr4	88536448	rs142168734	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,36:30:165:0.218:2	./.	0/1:164,16:30:180:0.089:2	./.	./.	./.	./.
chr4	88536451	rs141946550	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:126,37:29:163:0.227:2	./.	0/1:157,16:29:173:0.092:2	./.	./.	./.	./.
chr4	88536457	rs141186173	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,69:32:167:0.413:2	./.	0/1:150,28:32:178:0.157:2	./.	./.	./.	./.
chr4	88536460	rs199691318	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:125,41:29:166:0.247:2	./.	0/1:158,25:31:183:0.137:2	./.	./.	./.	./.
chr4	88536520	rs115476207	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:92,76:32:169:0.452:2	0/1:82,78:31:160:0.488:2	0/1:17,21:32:38:0.553:2	0/1:107,81:32:188:0.431:2	./.	0/1:1,178:32:179:0.994:2	0/1:104,87:32:191:0.455:2	./.	0/1:119,73:32:192:0.380:2	0/1:105,83:32:188:0.441:2	0/1:95,68:32:163:0.417:2
chr4	88536550	rs145589857	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,88:30:183:0.484:2	./.	./.	./.	0/1:22,97:30:119:0.815:2	./.	./.	0/1:83,83:29:167:0.500:2
chr4	88536553	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,8:25:187:0.043:2	./.	./.	./.
chr4	88536589	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,6:31:188:0.032:2	./.	./.	0/1:184,4:35:189:0.021:2	./.	./.
chr4	88536609	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,6:30:185:0.032:2	./.	./.	0/1:179,6:31:186:0.032:2	./.	./.
chr4	88536692	rs145771385	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,76:29:167:0.455:2	0/1:66,68:27:134:0.507:2	0/1:24,19:29:43:0.442:2	0/1:97,84:29:181:0.464:2	0/1:8,172:28:180:0.956:2	./.	./.	0/1:107,78:28:185:0.422:2	0/1:92,84:29:176:0.477:2	0/1:99,76:29:175:0.434:2	0/1:94,79:29:174:0.457:2
chr4	88536800	rs201678608	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,88:30:180:0.489:2	./.	./.
chr4	88536818	rs62642443	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:80,63:29:143:0.441:2	0/1:60,59:28:119:0.496:2	0/1:21,10:30:31:0.323:2	0/1:85,76:29:161:0.472:2	./.	0/1:104,62:29:166:0.373:2	./.	0/1:90,81:29:171:0.474:2	./.	0/1:87,80:29:167:0.479:2	0/1:86,59:28:145:0.407:2
chr4	88536847	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:31:141:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	88536856	rs372679740	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,5:31:130:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	88536874	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:122,12:31:134:0.090:2	./.	./.	./.	0/1:95,6:32:101:0.059:2	./.	./.	./.
chr4	88536880	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:95,6:30:101:0.059:2	0/1:52,6:30:58:0.103:2	./.	0/1:112,27:29:139:0.194:2	./.	0/1:173,7:28:180:0.039:2	./.	0/1:91,24:29:115:0.209:2	./.	0/1:97,5:30:103:0.049:2	0/1:92,18:29:110:0.164:2
chr4	88536883	rs139018672	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,82:31:97:0.845:2	0/1:16,44:30:60:0.733:2	0/1:4,8:31:12:0.667:2	0/1:46,99:32:146:0.683:2	0/1:2,97:31:99:0.980:2	0/1:141,37:30:179:0.208:2	0/1:103,79:31:182:0.434:2	0/1:41,80:31:121:0.661:2	0/1:121,40:32:161:0.248:2	0/1:13,86:32:99:0.869:2	0/1:32,79:31:111:0.712:2
chr4	88536886	rs370521615	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,9:31:97:0.093:2	0/1:50,9:30:59:0.153:2	0/1:9,4:31:13:0.308:2	0/1:105,42:28:147:0.286:2	./.	0/1:169,10:25:179:0.056:2	./.	0/1:82,37:27:119:0.311:2	./.	0/1:90,9:30:99:0.091:2	0/1:84,26:26:111:0.236:2
chr4	88536899	rs150637282	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,48:29:84:0.578:2	0/1:22,32:28:54:0.593:2	0/1:10,5:31:15:0.333:2	0/1:93,64:29:157:0.408:2	0/1:5,68:29:73:0.932:2	0/1:144,28:29:172:0.163:2	./.	0/1:69,40:28:109:0.367:2	0/1:115,32:29:147:0.218:2	0/1:36,54:30:90:0.600:2	0/1:60,51:30:111:0.459:2
chr4	88536901	rs148817324	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,48:29:85:0.565:2	0/1:27,28:30:55:0.509:2	0/1:10,5:31:15:0.333:2	0/1:100,63:29:163:0.387:2	0/1:4,69:30:73:0.945:2	0/1:147,26:30:173:0.150:2	./.	0/1:73,40:30:114:0.354:2	0/1:117,30:30:148:0.204:2	0/1:40,53:29:93:0.570:2	0/1:65,49:30:115:0.430:2
chr4	88536916	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,6:22:63:0.095:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	88536917	rs199901845	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:90,12:32:102:0.118:2	0/1:59,5:32:64:0.078:2	./.	./.	0/1:53,52:31:105:0.495:2	./.	./.	./.	0/1:142,8:30:150:0.053:2	0/1:103,13:30:116:0.112:2	./.
chr4	88536919	rs369387818	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:88,12:31:100:0.120:2	0/1:56,5:31:61:0.082:2	./.	./.	0/1:48,52:32:100:0.520:2	./.	./.	./.	0/1:142,10:30:152:0.066:2	0/1:104,13:33:117:0.111:2	./.
chr4	88536923	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,38:30:136:0.279:2	./.	./.	./.
chr4	88536925	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,7:33:164:0.043:2	./.	./.	./.	./.
chr4	88536934	rs200948555	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,16:29:151:0.107:2	./.	./.	./.	./.
chr4	88537035	rs202210195	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:50,21:31:71:0.296:2	0/1:41,26:28:67:0.388:2	./.	./.	0/1:1,46:30:47:0.979:2	./.	./.	./.	0/1:109,25:32:134:0.187:2	0/1:64,25:31:89:0.281:2	./.
chr4	88537063	rs142295724	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,9:31:39:0.231:2	0/1:24,18:30:42:0.429:2	0/1:3,3:32:6:0.500:2	0/1:40,36:32:76:0.474:2	0/1:2,22:32:24:0.917:2	./.	./.	0/1:44,26:32:70:0.371:2	0/1:128,12:32:140:0.086:2	./.	0/1:33,12:31:45:0.267:2
chr4	88537078	rs373805744	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,8:27:9:0.889:2	0/1:0,10:26:10:1.00:2	0/1:0,4:27:4:1.00:2	0/1:0,29:28:29:1.00:2	./.	0/1:135,25:25:160:0.156:2	./.	0/1:2,30:26:32:0.938:2	./.	0/1:0,16:29:16:1.00:2	0/1:0,18:29:18:1.00:2
chr4	88537081	rs370267258	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,8:31:9:0.889:2	0/1:0,10:29:10:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,26:29:26:1.00:2	0/1:2,3:21:5:0.600:2	./.	./.	0/1:2,26:29:28:0.929:2	./.	0/1:0,12:31:12:1.00:2	0/1:0,16:31:16:1.00:2
chr4	88537088	rs201754564	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,3:27:3:1.00:2	0/1:0,3:31:3:1.00:2	./.	0/1:0,10:31:11:1.00:2	./.	./.	./.	0/1:2,10:31:12:0.833:2	./.	0/1:0,5:30:5:1.00:2	./.
chr4	88537105	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,22:29:157:0.140:2	./.	./.	./.	./.
chr4	88537108	.	T	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,2:34:3:0.667:2	./.	./.	0/1:0,12:31:12:1.00:2	./.	0/1:144,15:31:159:0.094:2	0/1:140,22:32:163:0.136:2	0/1:3,11:32:14:0.786:2	./.	0/1:0,8:33:8:1.00:2	./.
chr4	88537114	rs369973717	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:3,2:35:5:0.400:2	./.	./.	0/1:4,7:33:11:0.636:2	./.	0/1:148,8:33:156:0.051:2	0/1:147,14:31:161:0.087:2	0/1:10,9:32:19:0.474:2	./.	0/1:6,5:33:11:0.455:2	./.
chr4	88537115	rs201186956	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:33:6:0.500:2	./.	./.	./.	0/1:3,6:32:9:0.667:2	./.	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.
chr4	88537117	rs199799532	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:1,2:31:3:0.667:2	./.	0/1:7,4:26:11:0.364:2	./.	./.	./.	0/1:13,6:30:19:0.316:2	./.	./.	0/1:0,5:29:5:1.00:2
chr4	88537121	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,3:33:11:0.273:2	./.	./.	./.
chr4	88537123	rs372453629	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,8:28:9:0.889:2	0/1:0,5:31:5:1.00:2	./.	0/1:1,9:30:10:0.900:2	0/1:2,14:30:16:0.875:2	0/1:151,10:30:161:0.062:2	0/1:158,5:30:163:0.031:2	0/1:3,7:29:10:0.700:2	0/1:139,8:28:147:0.054:2	0/1:0,11:30:12:1.00:2	0/1:0,7:29:7:1.00:2
chr4	88537132	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,28:32:163:0.173:2	./.	./.	./.	./.
chr4	88537213	rs151217478	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,7:27:40:0.175:2	0/1:16,6:24:24:0.273:2	./.	0/1:21,20:27:41:0.488:2	0/1:18,7:24:25:0.280:2	0/1:135,9:29:144:0.063:2	0/1:124,16:28:141:0.114:2	0/1:21,17:23:39:0.447:2	./.	0/1:26,21:28:48:0.447:2	0/1:17,8:24:25:0.320:2
chr4	88537231	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:29,9:20:40:0.237:2	0/1:24,4:27:28:0.143:2	./.	0/1:41,6:26:48:0.128:2	./.	0/1:147,7:22:156:0.045:2	./.	0/1:36,7:28:44:0.163:2	./.	./.	./.
chr4	88537232	rs140656082	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:28:41:1.00:2	0/1:0,28:28:28:1.00:2	0/1:0,9:27:9:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,14:23:14:1.00:2	0/1:119,40:28:159:0.252:2	0/1:102,38:29:140:0.271:2	0/1:2,42:28:44:0.955:2	0/1:96,6:29:102:0.059:2	0/1:0,30:30:30:1.00:2	0/1:0,35:27:36:1.00:2
chr4	88537240	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:38,9:31:47:0.191:2	0/1:30,4:26:34:0.118:2	./.	0/1:46,4:32:50:0.080:2	./.	./.	./.	0/1:51,5:33:57:0.089:2	./.	./.	0/1:50,4:32:54:0.074:2
chr4	88537243	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,3:30:9:0.375:2	./.	./.	./.	./.	./.	./.
chr4	88537249	rs371359066	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,21:30:29:0.724:2	./.	./.	./.	0/1:76,7:27:84:0.084:2	0/1:29,11:29:40:0.275:2	./.
chr4	88537258	.	T	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:45,10:25:56:0.182:2	0/1:38,8:30:47:0.174:2	0/1:17,3:31:20:0.150:2	./.	0/1:6,48:30:54:0.889:2	./.	./.	./.	0/1:84,10:29:95:0.106:2	0/1:38,13:28:51:0.255:2	./.
chr4	88537261	rs200612038	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:49,10:31:60:0.169:2	0/1:35,11:28:48:0.239:2	0/1:16,5:27:21:0.238:2	./.	0/1:3,51:30:55:0.944:2	./.	./.	./.	0/1:87,11:28:99:0.112:2	0/1:41,13:31:55:0.241:2	./.
chr4	88537268	rs202025088	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,42:30:72:0.583:2	0/1:26,32:30:58:0.552:2	0/1:9,16:29:25:0.640:2	0/1:19,59:30:78:0.756:2	./.	0/1:98,63:29:161:0.391:2	./.	./.	./.	0/1:42,41:30:83:0.494:2	0/1:12,56:30:68:0.824:2
chr4	88537276	rs147477032	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,11:30:79:0.141:2	./.	./.	./.	0/1:82,12:27:94:0.128:2	./.	./.	0/1:69,10:24:79:0.127:2
chr4	88537279	rs142684629	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,11:30:83:0.133:2	./.	./.	./.	0/1:81,12:26:93:0.129:2	0/1:112,6:28:118:0.051:2	./.	0/1:71,9:26:80:0.113:2
chr4	88537303	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,17:31:109:0.156:2	./.	./.	./.	./.	./.	0/1:122,6:33:128:0.047:2	./.
chr4	88537306	rs374381786	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,17:34:118:0.144:2	./.	./.	./.	./.	./.	0/1:123,6:29:130:0.047:2	0/1:96,4:31:100:0.040:2
chr4	88537315	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,20:29:120:0.167:2	./.
chr4	88537357	rs146317878	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,31:27:109:0.287:2	./.	./.	0/1:113,31:25:144:0.215:2
chr4	88537378	rs371545208	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,49:32:154:0.318:2	0/1:56,53:31:109:0.486:2	./.	./.	./.
chr4	88537384	rs201295377	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,81:28:183:0.443:2	./.	./.	./.	0/1:67,47:29:114:0.412:2	./.	./.	0/1:103,43:27:147:0.295:2
chr4	88537405	rs114882264	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,79:33:175:0.451:2	./.	./.	./.	0/1:61,50:33:111:0.450:2	./.	./.	0/1:99,47:32:147:0.322:2
chr4	88537420	rs112989710	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,67:30:150:0.447:2	0/1:65,68:30:134:0.511:2	0/1:25,25:30:50:0.500:2	0/1:96,77:29:173:0.445:2	0/1:4,169:31:173:0.977:2	./.	0/1:117,35:31:152:0.230:2	0/1:4,87:30:91:0.956:2	0/1:90,87:32:177:0.492:2	0/1:92,73:31:166:0.442:2	0/1:92,48:31:140:0.343:2
chr4	88537423	rs115597449	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,35:32:149:0.235:2	0/1:56,35:31:91:0.385:2	./.	./.	./.
chr4	88537426	rs371154871	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,6:22:124:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	88537438	rs111536498	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,23:27:150:0.154:2	0/1:77,30:28:107:0.280:2	./.	./.	./.
chr4	88537444	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,15:29:146:0.103:2	0/1:86,24:25:110:0.218:2	./.	./.	./.
chr4	88537450	rs375071108	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,21:29:150:0.141:2	0/1:84,35:27:119:0.294:2	./.	./.	./.
chr4	88537456	rs111240022	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,8:29:127:0.063:2	./.	./.	./.
chr4	88537509	rs111876111	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,25:31:143:0.175:2	0/1:107,21:29:128:0.164:2	./.	./.	./.
chr4	88537513	rs112275895	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,30:31:147:0.204:2	0/1:114,25:32:139:0.180:2	./.	./.	./.
chr4	88537522	rs111884410	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,36:30:160:0.226:2	0/1:108,40:30:148:0.270:2	./.	./.	./.
chr4	88537556	rs112542308	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,12:26:169:0.071:2	0/1:91,71:29:162:0.438:2	./.	./.	./.
chr4	88537558	rs372246892	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,12:31:170:0.071:2	0/1:161,5:31:166:0.030:2	./.	./.	./.
chr4	88537574	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:36:170:0.024:2	./.	./.	./.	./.
chr4	88583135	rs10019009	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	0/1:121,4:33:125:0.032:2	./.	0/1:51,45:33:96:0.469:2	0/1:65,40:32:105:0.381:2
chr4	88583774	rs141979823	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,38:31:78:0.487:2	./.	./.	./.	./.	./.
chr4	88583809	rs150896376	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,31:29:71:0.437:2
chr4	88584014	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,42:32:101:0.416:2	./.	./.	./.	./.	./.	./.	./.
chr4	88584015	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,42:29:103:0.408:2	./.	./.	./.	./.	./.	./.	./.
chr4	88584148	rs2615498	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:23,17:31:41:0.425:2	0/1:20,17:31:37:0.459:2	./.	./.	0/1:21,13:30:34:0.382:2	./.	./.	0/1:28,37:31:65:0.569:2	0/1:39,28:32:67:0.418:2	0/1:26,19:31:45:0.422:2	./.
chr4	88584160	rs2615497	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:27,18:32:45:0.400:2	0/1:20,18:31:38:0.474:2	./.	./.	0/1:21,12:31:33:0.364:2	./.	0/1:35,23:31:58:0.397:2	0/1:32,34:32:66:0.515:2	0/1:42,25:32:67:0.373:2	0/1:24,20:31:44:0.455:2	./.
chr4	88732531	rs4693878	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,89:32:90:0.989:2	0/1:0,63:32:63:1.00:2	0/1:0,10:32:10:1.00:2	0/1:2,84:33:86:0.977:2	0/1:32,22:32:54:0.407:2	0/1:1,72:32:73:0.986:2	0/1:2,65:32:67:0.970:2	0/1:44,51:32:95:0.537:2	0/1:66,62:33:128:0.484:2	0/1:0,99:33:99:1.00:2	0/1:58,72:32:130:0.554:2
chr4	88732692	rs1054627	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,25:32:47:0.532:2	0/1:22,18:31:40:0.450:2	./.	0/1:1,55:30:56:0.982:2	0/1:35,46:30:81:0.568:2	0/1:5,64:30:69:0.928:2	0/1:50,49:30:99:0.495:2	./.	0/1:22,44:32:66:0.667:2	./.	./.
chr4	88732746	rs13144371	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:32:29:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,47:33:47:1.00:2	0/1:23,27:32:50:0.540:2	0/1:1,48:32:49:0.980:2	0/1:1,47:32:48:0.979:2	0/1:24,24:32:48:0.500:2	0/1:13,27:33:40:0.675:2	0/1:0,51:32:51:1.00:2	0/1:20,24:31:44:0.545:2
chr4	88732763	rs17013181	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,21:32:42:0.500:2	./.	0/1:16,29:32:45:0.644:2	./.
chr4	88732911	rs1054628	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,10:31:36:0.278:2	./.	./.	0/1:14,12:30:26:0.462:2	./.
chr4	88732918	rs1054629	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,22:31:44:0.500:2	0/1:15,14:32:29:0.483:2	./.	0/1:2,51:31:53:0.962:2	0/1:13,23:30:36:0.639:2	0/1:0,31:31:31:1.00:2	0/1:11,29:29:40:0.725:2	./.	0/1:20,24:31:44:0.545:2	./.	./.
chr4	88767008	rs17013285	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,26:30:30:0.867:2	./.	0/1:11,18:31:29:0.621:2	0/1:25,20:31:45:0.444:2
chr4	88902692	rs4754	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:81,60:30:141:0.426:2	0/1:44,42:30:86:0.488:2	0/1:15,7:28:22:0.318:2	./.	0/1:116,84:30:200:0.420:2	0/1:115,83:30:198:0.419:2	0/1:107,90:30:197:0.457:2	./.	./.	0/1:71,80:31:151:0.530:2	./.
chr4	88902813	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,5:27:192:0.026:2	./.	./.	./.	./.	./.
chr4	88902851	rs35382133	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,64:32:116:0.552:2	0/1:43,33:32:76:0.434:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	88903853	rs1126616	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:57,51:32:108:0.472:2	0/1:28,25:32:53:0.472:2	0/1:7,4:31:11:0.364:2	./.	0/1:48,55:31:103:0.534:2	0/1:66,52:31:118:0.441:2	0/1:68,59:32:127:0.465:2	./.	./.	0/1:48,47:31:95:0.495:2	./.
chr4	88904005	rs4660	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,10:29:44:0.227:2	./.	./.	./.	./.
chr4	88989102	rs145343957	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,17:31:45:0.386:2	./.	./.	./.	./.
chr4	88996753	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,36:33:56:0.643:2	./.
chr4	89018670	rs45605536	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,87:32:184:0.473:2	./.	./.	./.	./.	./.	./.	./.
chr4	89052323	rs2231142	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:31:14:0.286:2	./.	./.	./.	0/1:68,56:30:125:0.452:2	./.	0/1:76,61:32:137:0.445:2	./.	./.
chr4	89186162	rs34981823	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,53:30:97:0.546:2	./.	./.	./.	./.
chr4	89189930	rs146226844	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,50:28:126:0.397:2	./.	./.	./.	./.
chr4	89300241	rs61978650	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,5:30:9:0.556:2	./.
chr4	89311883	rs60722298	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:73,4:31:77:0.052:2	./.	./.	./.	./.	./.	0/1:51,36:32:87:0.414:2	./.	./.	./.	./.
chr4	89311962	rs12510688	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,66:30:136:0.485:2	./.	./.	./.	./.	./.	./.	0/1:78,66:29:144:0.458:2
chr4	89319296	rs17014118	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,68:32:146:0.466:2	0/1:59,41:33:100:0.410:2	./.	0/1:91,67:34:158:0.424:2	0/1:65,61:32:126:0.484:2	0/1:163,4:33:167:0.024:2
chr4	89345031	rs61734924	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,13:30:58:0.224:2	./.	./.	./.	./.
chr4	89352378	rs187435909	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,59:29:129:0.457:2	./.	./.	./.	./.	./.	./.	./.
chr4	89397091	rs7699006	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,55:33:82:0.671:2	0/1:17,40:33:57:0.702:2	0/1:0,14:33:14:1.00:2	0/1:40,38:33:78:0.487:2	0/1:30,15:32:45:0.333:2	0/1:45,34:32:79:0.430:2	0/1:4,44:32:48:0.917:2	./.	0/1:50,52:34:102:0.510:2	0/1:61,41:33:102:0.402:2	./.
chr4	89400623	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:31:52:0.077:2	./.
chr4	89415396	rs6857425	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,116:33:116:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,116:32:116:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,123:32:123:1.00:2	0/1:0,91:33:91:1.00:2	0/1:0,186:32:186:1.00:2	0/1:0,141:33:141:1.00:2	0/1:0,114:33:114:1.00:2	0/1:0,189:33:189:1.00:2
chr4	89421086	rs10516809	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,8:33:17:0.471:2	./.	./.	./.	./.	./.	./.
chr4	89443047	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:34:95:0.042:2
chr4	89443162	rs3177413	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,29:32:74:0.392:2	0/1:30,22:31:54:0.423:2	0/1:0,3:32:3:1.00:2	0/1:56,49:32:105:0.467:2	./.	0/1:44,43:30:87:0.494:2	./.	./.	./.	./.	./.
chr4	89444706	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,6:31:51:0.118:2	./.	./.	./.
chr4	89444722	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:32:35:0.114:2	./.	./.	./.
chr4	89574166	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,4:30:89:0.045:2	./.	./.	./.	./.	./.	./.	./.
chr4	89577131	rs73841608	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,56:32:125:0.448:2	./.	./.	./.	./.
chr4	89577214	rs2972040	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:31:8:0.750:2	./.	./.	./.	0/1:1,36:32:37:0.973:2	./.	0/1:29,27:32:56:0.482:2	./.	./.
chr4	89601300	rs75022724	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,21:33:51:0.412:2	./.	./.	./.	./.	./.	./.	./.
chr4	89607905	rs3737488	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	./.	./.	0/1:16,30:33:46:0.652:2	./.	0/1:45,36:33:81:0.444:2	./.	./.
chr4	89618387	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:32:182:0.022:2	./.
chr4	89618479	rs187220478	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,47:31:92:0.511:2	./.	./.	./.	./.
chr4	89618837	rs710834	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,9:27:10:0.900:2	./.	0/1:2,4:23:6:0.667:2	0/1:16,4:25:20:0.200:2	0/1:5,4:28:9:0.444:2	./.	./.
chr4	89619265	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:32:115:0.035:2	./.
chr4	89619276	rs2972011	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,168:29:173:0.971:2	0/1:101,95:29:196:0.485:2	0/1:78,57:30:135:0.422:2	./.	./.
chr4	89625427	rs1804080	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,74:33:137:0.540:2	0/1:83,42:32:125:0.336:2	0/1:73,51:33:124:0.411:2	./.	./.
chr4	89653257	rs1801915	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,172:31:174:0.989:2	0/1:114,80:31:195:0.412:2	0/1:114,62:31:176:0.352:2	./.	./.
chr4	89660221	rs200812331	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:128,13:18:141:0.092:2	./.	./.	./.	0/1:143,29:12:172:0.169:2	0/1:134,23:14:158:0.146:2	./.	0/1:148,16:18:164:0.098:2	./.	0/1:133,16:15:149:0.107:2	0/1:132,17:19:149:0.114:2
chr4	89668859	rs7657817	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:79,42:30:121:0.347:2	0/1:48,44:31:93:0.478:2	./.	./.	0/1:67,43:29:110:0.391:2	./.	0/1:0,65:29:65:1.00:2	0/1:61,62:29:123:0.504:2	0/1:85,68:31:153:0.444:2	./.	./.
chr4	89670155	rs3756050	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:21,23:32:44:0.523:2	0/1:10,16:32:26:0.615:2	./.	./.	0/1:14,20:32:34:0.588:2	./.	0/1:0,33:32:33:1.00:2	0/1:38,22:33:60:0.367:2	0/1:32,28:32:60:0.467:2	./.	./.
chr4	89688715	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:32:125:0.032:2	./.	./.
chr4	89772301	rs7680970	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,20:32:37:0.541:2	./.	./.
chr4	89772321	rs115194267	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,12:30:41:0.293:2	./.	./.	./.
chr4	90034134	rs150388087	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,16:31:30:0.533:2	./.	./.	./.	./.	./.	./.
chr4	90034686	rs17015027	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:15,30:29:47:0.667:2	0/1:19,15:27:34:0.441:2	./.	./.	./.	./.	0/1:28,22:28:50:0.440:2	0/1:38,35:29:73:0.479:2	./.	./.	./.
chr4	90035549	rs2280099	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,48:29:50:0.960:2	./.	./.	./.	0/1:45,35:31:80:0.438:2	./.	./.
chr4	90035554	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:33:87:0.046:2	./.	./.
chr4	90035967	rs8582	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,36:31:37:0.973:2	./.	./.	./.	0/1:54,40:32:94:0.426:2	./.	./.
chr4	90169925	rs7653897	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,50:28:98:0.510:2	0/1:13,25:30:38:0.658:2	0/1:0,5:26:5:1.00:2	0/1:55,32:29:87:0.368:2	0/1:49,31:29:80:0.388:2	0/1:43,49:29:93:0.533:2	0/1:45,19:29:64:0.297:2	./.	./.	0/1:41,18:29:59:0.305:2	0/1:0,99:28:100:1.00:2
chr4	90170118	rs28622301	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,26:30:49:0.542:2	0/1:17,13:32:30:0.433:2	./.	./.	./.	0/1:26,32:32:58:0.552:2	./.	./.	./.	./.	0/1:44,20:30:65:0.313:2
chr4	90170734	rs182919972	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,7:30:20:0.350:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	90170862	rs202098733	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,15:15:144:0.104:2	./.	0/1:133,19:12:152:0.125:2	0/1:147,11:17:158:0.070:2	./.	0/1:148,13:15:161:0.081:2	0/1:132,13:15:145:0.090:2	0/1:114,11:17:126:0.088:2
chr4	90170971	rs141470892	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,62:32:139:0.446:2	./.	./.	./.	./.
chr4	90816294	rs1442138	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,14:30:33:0.424:2	0/1:10,8:29:18:0.444:2	./.	./.	./.	0/1:7,9:30:16:0.563:2	./.	./.	0/1:14,13:32:27:0.481:2	./.	./.
chr4	90816336	rs371723738	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,4:33:25:0.160:2	./.	./.
chr4	90816581	rs61730034	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,43:29:98:0.439:2	./.	./.	0/1:51,43:30:94:0.457:2	./.	./.
chr4	90856091	rs113797318	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,23:31:69:0.333:2	./.	./.	./.	./.	./.
chr4	90857129	rs114975748	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,42:32:102:0.412:2	./.	./.	./.	./.	./.
chr4	90857547	rs41279301	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,25:34:88:0.284:2	./.	./.
chr4	90874562	rs147451161	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,8:32:27:0.296:2	./.	./.	./.	./.	./.
chr4	91230579	rs12647859	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,68:32:71:0.958:2	0/1:0,38:31:38:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,43:31:96:0.448:2
chr4	91760085	rs142912668	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:60,5:31:65:0.077:2	./.	./.	./.	0/1:97,15:31:112:0.134:2	0/1:68,6:30:74:0.081:2	0/1:103,4:31:107:0.037:2	./.	./.	0/1:89,6:32:95:0.063:2
chr4	91760120	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,8:31:101:0.079:2	./.	./.	./.	./.	./.
chr4	93511396	rs34144324	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,67:32:123:0.545:2	./.
chr4	94138045	rs187713184	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,19:32:38:0.500:2	./.	./.	./.	./.	./.	./.
chr4	94145839	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,4:32:82:0.049:2	./.	./.	./.	./.	./.	./.
chr4	94316763	rs1385405	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:32:95:1.00:2	0/1:0,65:32:65:1.00:2	0/1:8,8:33:16:0.500:2	0/1:0,138:32:138:1.00:2	0/1:0,76:32:76:1.00:2	./.	0/1:67,70:32:138:0.511:2	0/1:70,46:32:116:0.397:2	0/1:86,74:32:160:0.463:2	0/1:65,39:32:104:0.375:2	0/1:78,66:32:144:0.458:2
chr4	94344042	rs10034345	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,43:32:102:0.422:2	./.	./.	./.	./.	./.	./.	./.
chr4	94751674	rs28648558	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,37:31:38:1.00:2	0/1:0,20:32:20:1.00:2	./.	0/1:19,19:31:38:0.500:2	0/1:12,7:29:19:0.368:2	0/1:19,7:31:26:0.269:2	0/1:1,13:31:14:0.929:2	0/1:13,17:32:30:0.567:2	0/1:23,13:33:36:0.361:2	0/1:16,18:32:34:0.529:2	./.
chr4	94752107	rs4602468	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,35:28:35:1.00:2	0/1:0,13:26:13:1.00:2	./.	0/1:10,12:28:22:0.545:2	0/1:16,14:28:30:0.467:2	0/1:9,12:26:21:0.571:2	0/1:0,12:26:12:1.00:2	0/1:10,10:27:20:0.500:2	0/1:18,19:28:37:0.514:2	0/1:16,9:26:25:0.360:2	./.
chr4	95170839	rs11722476	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:31:12:0.667:2	./.	./.	./.	0/1:45,25:32:70:0.357:2	0/1:64,42:31:106:0.396:2	0/1:67,58:32:125:0.464:2	./.	0/1:75,57:32:132:0.432:2
chr4	95173779	rs7439869	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,10:32:11:0.909:2	0/1:31,37:33:68:0.544:2	./.	0/1:36,25:32:61:0.410:2	0/1:16,7:33:23:0.304:2	0/1:35,20:31:55:0.364:2	0/1:28,33:33:62:0.541:2	0/1:52,14:31:66:0.212:2	0/1:0,70:33:70:1.00:2
chr4	95173928	rs139839410	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	0/1:13,6:32:19:0.316:2	./.	./.	./.	./.
chr4	95174006	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,4:33:64:0.063:2	./.	./.	./.	./.	./.	./.
chr4	95186055	rs2306802	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:32:16:0.563:2	./.	./.	./.	0/1:41,33:33:74:0.446:2	0/1:70,40:33:110:0.364:2	0/1:65,59:33:124:0.476:2	./.	0/1:66,62:33:128:0.484:2
chr4	95194846	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,6:34:121:0.050:2	./.	./.
chr4	95197520	rs6823404	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,7:31:9:0.778:2	0/1:50,62:31:112:0.554:2	./.	./.	0/1:60,28:32:88:0.318:2	0/1:52,52:32:104:0.500:2	0/1:41,58:33:99:0.586:2	0/1:51,38:32:89:0.427:2	0/1:0,87:32:87:1.00:2
chr4	95220634	rs144419616	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,67:32:132:0.508:2	./.	./.	./.	./.	./.
chr4	95220672	rs76328980	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,94:31:185:0.508:2	./.	./.	./.	./.	./.
chr4	95220779	rs146652732	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,25:32:46:0.543:2	./.
chr4	95223349	rs34124298	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,74:30:166:0.448:2	./.	./.	./.	./.	./.
chr4	95229850	rs61752528	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,43:32:85:0.506:2	./.	./.	./.	./.	./.
chr4	95496882	rs2452600	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:103,80:31:183:0.437:2	0/1:62,51:32:113:0.451:2	0/1:14,11:30:25:0.440:2	./.	0/1:96,93:30:189:0.492:2	0/1:101,87:30:188:0.463:2	0/1:115,79:31:194:0.407:2	0/1:110,84:30:194:0.433:2	0/1:108,79:31:187:0.422:2	./.	./.
chr4	95503902	rs5013417	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,54:32:118:0.458:2	0/1:45,43:32:88:0.489:2	0/1:15,4:33:19:0.211:2	0/1:50,62:33:112:0.554:2	0/1:56,37:32:93:0.398:2	./.	0/1:59,43:33:102:0.422:2	0/1:60,49:32:109:0.450:2	0/1:51,67:33:118:0.568:2	0/1:0,93:32:93:1.00:2	0/1:85,68:33:153:0.444:2
chr4	95506842	rs11097431	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,66:31:132:0.500:2	./.	0/1:64,61:30:125:0.488:2	./.	./.	./.	./.	0/1:72,68:31:140:0.486:2
chr4	95539267	rs966845	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:31:40:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,85:30:85:1.00:2	0/1:0,68:29:68:1.00:2	0/1:0,68:30:68:1.00:2	0/1:0,93:30:93:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,42:30:42:1.00:2	0/1:0,64:31:64:1.00:2
chr4	95539302	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:32:90:0.044:2	./.	./.
chr4	95561459	rs7690296	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,27:34:58:0.466:2	0/1:16,18:32:34:0.529:2	0/1:4,6:33:10:0.600:2	0/1:36,46:33:82:0.561:2	0/1:25,17:32:42:0.405:2	./.	0/1:42,31:33:73:0.425:2	0/1:33,31:32:64:0.484:2	0/1:42,42:33:84:0.500:2	0/1:0,60:33:60:1.00:2	0/1:39,45:33:84:0.536:2
chr4	95575753	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:30:112:0.036:2	./.	./.	./.	./.	./.
chr4	95578588	rs13107595	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,167:32:167:1.00:2	0/1:0,121:32:121:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,191:31:191:1.00:2	0/1:0,165:31:165:1.00:2	0/1:0,200:31:200:1.00:2	0/1:0,196:31:196:1.00:2	0/1:0,197:31:198:1.00:2	0/1:0,193:32:193:1.00:2	0/1:0,196:31:196:1.00:2	0/1:2,191:32:193:0.990:2
chr4	96073875	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:32:166:0.024:2
chr4	96091414	rs34585936	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,42:28:73:0.575:2	./.	0/1:53,31:29:84:0.369:2	./.	./.	./.	./.
chr4	96104152	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,17:31:119:0.143:2	./.	./.
chr4	96106322	rs2289043	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,26:29:70:0.371:2	0/1:21,12:29:33:0.364:2	0/1:0,5:31:5:1.00:2	0/1:38,40:31:78:0.513:2	0/1:1,51:30:52:0.981:2	0/1:0,85:30:85:1.00:2	0/1:0,54:30:54:1.00:2	0/1:50,38:30:88:0.432:2	0/1:1,67:31:68:0.985:2	0/1:0,53:31:53:1.00:2	./.
chr4	96123981	rs3733212	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:46,44:31:91:0.489:2	0/1:33,24:32:57:0.421:2	0/1:9,8:31:17:0.471:2	./.	0/1:2,184:31:187:0.989:2	./.	0/1:3,174:31:178:0.983:2	./.	0/1:0,155:32:156:1.00:2	0/1:0,111:31:111:1.00:2	0/1:58,63:31:121:0.521:2
chr4	96127869	rs2276322	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:39,31:30:70:0.443:2	0/1:27,16:30:43:0.372:2	0/1:5,9:31:14:0.643:2	./.	0/1:0,74:30:74:1.00:2	./.	0/1:48,36:30:84:0.429:2	./.	0/1:0,73:31:73:1.00:2	0/1:40,50:30:90:0.556:2	0/1:52,35:30:87:0.402:2
chr4	96166270	rs35120448	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,31:31:70:0.443:2	./.	0/1:41,35:32:76:0.461:2	./.	./.	./.	./.
chr4	96256616	rs4699423	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,73:31:145:0.503:2	0/1:46,37:29:83:0.446:2	0/1:9,6:30:15:0.400:2	0/1:3,167:30:170:0.982:2	./.	./.	0/1:55,65:28:120:0.542:2	0/1:71,77:30:148:0.520:2	./.	./.	0/1:92,74:30:166:0.446:2
chr4	96256673	rs1843018	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,52:33:111:0.468:2	0/1:40,25:33:65:0.385:2	0/1:0,11:32:11:1.00:2	0/1:0,142:32:142:1.00:2	0/1:54,47:32:101:0.465:2	0/1:1,113:32:114:0.991:2	0/1:52,53:33:105:0.505:2	0/1:0,133:33:133:1.00:2	0/1:0,149:33:149:1.00:2	./.	0/1:0,177:33:177:1.00:2
chr4	96761688	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,5:31:139:0.036:2	./.	./.	./.
chr4	98865077	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:31:41:0.098:2	./.	./.	./.	./.	./.
chr4	98893437	rs783960	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:48,52:32:101:0.520:2	0/1:27,25:33:52:0.481:2	./.	0/1:53,34:32:87:0.391:2	./.	0/1:60,67:32:127:0.528:2	0/1:23,22:33:45:0.489:2	./.	./.	0/1:2,72:33:74:0.973:2	0/1:2,144:33:146:0.986:2
chr4	98893476	rs783959	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:67,70:33:137:0.511:2	0/1:37,31:33:68:0.456:2	./.	0/1:59,66:32:126:0.528:2	./.	0/1:79,92:32:171:0.538:2	0/1:37,21:33:58:0.362:2	./.	./.	0/1:2,103:33:105:0.981:2	0/1:4,185:33:189:0.979:2
chr4	98893477	rs137988195	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,56:32:125:0.448:2	./.	./.	./.	./.	./.	./.	./.
chr4	99027137	rs2865979	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:31:5:0.600:2	0/1:31,20:33:51:0.392:2	0/1:0,34:33:34:1.00:2	0/1:35,23:33:58:0.397:2	0/1:23,8:32:31:0.258:2	./.	0/1:0,49:33:49:1.00:2	./.	./.
chr4	99027184	rs2903150	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:30:5:0.600:2	0/1:20,15:29:35:0.429:2	0/1:0,14:27:14:1.00:2	0/1:24,14:28:38:0.368:2	0/1:11,7:29:18:0.389:2	./.	0/1:0,42:29:42:1.00:2	./.	./.
chr4	99030414	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,4:33:83:0.048:2	./.	./.	./.	./.	./.	./.
chr4	99049593	rs17558193	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,6:32:14:0.429:2	0/1:73,82:33:155:0.529:2	0/1:0,95:32:95:1.00:2	0/1:85,68:32:153:0.444:2	0/1:55,47:32:103:0.461:2	./.	0/1:0,175:33:175:1.00:2	./.	./.
chr4	99055502	rs145017770	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,62:30:158:0.392:2	./.	./.	./.
chr4	99214581	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:136,7:32:144:0.049:2	./.	0/1:160,4:31:164:0.024:2	0/1:103,4:31:107:0.037:2	./.	./.	./.	./.
chr4	99342451	rs187721964	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:33:97:0.041:2	./.
chr4	99802256	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:121,16:32:137:0.117:2	./.	./.	./.	./.	./.	./.	./.
chr4	99802264	.	G	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:115,5:32:120:0.042:2	./.	./.	./.	./.	./.	0/1:158,7:31:165:0.042:2	./.	0/1:128,6:32:134:0.045:2	0/1:176,5:32:181:0.028:2
chr4	99806146	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,5:32:169:0.030:2	./.
chr4	99808254	rs62323192	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,70:31:161:0.435:2	./.	0/1:86,47:31:133:0.353:2	0/1:78,40:31:118:0.339:2	0/1:75,58:31:133:0.436:2	0/1:5,110:32:115:0.957:2	0/1:79,57:32:136:0.419:2	0/1:5,103:31:108:0.954:2
chr4	99823079	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:32:164:0.024:2	./.	./.	./.
chr4	99850126	rs11723037	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,14:32:29:0.483:2	./.	./.	0/1:18,24:32:42:0.571:2	0/1:0,24:32:24:1.00:2	0/1:30,15:32:45:0.333:2	0/1:14,6:31:20:0.300:2	0/1:0,36:31:36:1.00:2	0/1:0,26:33:26:1.00:2	0/1:26,10:33:36:0.278:2	0/1:0,19:31:19:1.00:2
chr4	99993853	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,6:30:178:0.034:2
chr4	99998005	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,4:31:104:0.038:2	./.	./.	./.	./.	./.	./.
chr4	100002589	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,5:33:145:0.034:2	./.
chr4	100002601	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,5:32:134:0.037:2	./.
chr4	100045574	rs1042364	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,69:30:122:0.566:2	0/1:38,22:30:60:0.367:2	0/1:0,9:29:9:1.00:2	0/1:0,86:30:86:1.00:2	0/1:0,90:30:90:1.00:2	./.	0/1:61,33:29:94:0.351:2	0/1:54,47:29:101:0.465:2	0/1:74,48:30:122:0.393:2	0/1:51,54:30:105:0.514:2	./.
chr4	100045599	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:29:95:0.042:2	./.	./.	./.
chr4	100045616	rs1126673	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,56:32:111:0.505:2	0/1:26,17:32:43:0.395:2	0/1:0,15:31:15:1.00:2	0/1:0,68:31:68:1.00:2	0/1:51,29:31:80:0.363:2	./.	0/1:56,20:32:76:0.263:2	0/1:47,37:31:84:0.440:2	0/1:72,38:32:110:0.345:2	0/1:50,38:32:88:0.432:2	./.
chr4	100045647	rs2602894	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,35:32:72:0.486:2	0/1:16,10:32:26:0.385:2	0/1:0,9:32:9:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,51:32:51:1.00:2	./.	0/1:31,12:32:43:0.279:2	0/1:43,23:31:66:0.348:2	0/1:46,22:33:68:0.324:2	0/1:39,22:31:61:0.361:2	./.
chr4	100047812	rs1126672	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,46:32:91:0.505:2	0/1:25,18:32:43:0.419:2	./.	./.	./.	0/1:2,79:31:81:0.975:2	0/1:50,21:31:71:0.296:2	0/1:61,32:32:93:0.344:2	0/1:46,49:33:95:0.516:2	0/1:40,29:31:69:0.420:2	0/1:0,101:32:101:1.00:2
chr4	100048414	rs1126671	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,34:31:67:0.515:2	0/1:11,24:32:35:0.686:2	0/1:0,13:29:13:1.00:2	0/1:0,84:32:85:1.00:2	0/1:36,43:31:79:0.544:2	./.	0/1:21,42:31:63:0.667:2	0/1:76,55:32:131:0.420:2	0/1:37,60:33:98:0.619:2	0/1:51,46:32:97:0.474:2	./.
chr4	100052733	rs1126670	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,40:31:102:0.392:2	0/1:30,23:31:53:0.434:2	0/1:0,15:32:15:1.00:2	0/1:0,99:31:99:1.00:2	0/1:49,29:31:78:0.372:2	./.	0/1:37,37:31:74:0.500:2	0/1:67,50:31:117:0.427:2	0/1:73,57:32:130:0.438:2	0/1:46,55:32:101:0.545:2	./.
chr4	100060256	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,3:35:91:0.033:2	./.	./.
chr4	100062819	rs2032349	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:32:67:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,100:32:100:1.00:2	0/1:57,52:32:110:0.477:2	0/1:0,124:32:124:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,93:32:94:1.00:2	0/1:0,103:32:103:1.00:2	0/1:0,91:32:91:1.00:2	0/1:2,88:33:90:0.978:2
chr4	100126091	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,18:33:40:0.450:2	./.	./.
chr4	100140306	rs4699735	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,101:33:101:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,95:33:95:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,123:32:123:1.00:2	0/1:0,109:33:109:1.00:2	0/1:0,77:33:77:1.00:2	0/1:0,98:32:98:1.00:2
chr4	100203533	rs377281291	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:165,6:30:171:0.035:2	./.	0/1:191,5:30:196:0.026:2	./.	./.	./.	./.
chr4	100203572	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:188,8:30:196:0.041:2	0/1:160,14:33:174:0.080:2	0/1:42,6:32:48:0.125:2	0/1:175,22:33:197:0.112:2	0/1:176,22:32:198:0.111:2	0/1:179,15:30:194:0.077:2	0/1:176,22:33:198:0.111:2	0/1:173,22:32:196:0.113:2	0/1:182,13:34:195:0.067:2	0/1:180,15:34:195:0.077:2	0/1:183,15:33:198:0.076:2
chr4	100231990	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,5:31:131:0.038:2	./.	./.	./.	./.	./.
chr4	100234991	rs150495372	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:187,7:33:194:0.036:2	0/1:173,11:32:184:0.060:2	0/1:185,6:32:192:0.031:2	./.	./.	./.	./.	./.
chr4	100235047	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:32:199:0.020:2	./.	./.	./.	./.	0/1:192,6:32:198:0.030:2
chr4	100235053	rs1789882	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,171:32:173:0.988:2	0/1:5,151:32:156:0.968:2	0/1:2,43:32:45:0.956:2	0/1:10,179:33:189:0.947:2	0/1:17,165:32:184:0.907:2	0/1:7,179:32:186:0.962:2	0/1:11,165:33:176:0.938:2	0/1:3,177:32:180:0.983:2	0/1:8,181:33:189:0.958:2	0/1:7,169:33:177:0.960:2	0/1:6,183:32:189:0.968:2
chr4	100235140	rs2018417	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,95:32:192:0.495:2	./.	./.	0/1:187,4:33:191:0.021:2	./.	./.	./.	./.
chr4	100237091	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:33:174:0.023:2
chr4	100239237	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:106,5:30:111:0.045:2	./.	./.	0/1:90,5:30:95:0.053:2	0/1:123,8:30:131:0.061:2	./.	./.	0/1:105,6:31:111:0.054:2
chr4	100239319	rs1229984	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:29:51:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,45:29:45:1.00:2	0/1:0,32:28:32:1.00:2	0/1:0,68:29:68:1.00:2	0/1:0,48:28:48:1.00:2	0/1:0,68:29:68:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,48:29:48:1.00:2	0/1:0,64:29:64:1.00:2
chr4	100240002	rs1229983	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,54:33:129:0.419:2	./.	./.	./.	0/1:92,106:33:198:0.535:2	./.	./.
chr4	100242432	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:32:90:0.044:2	./.	./.	./.	./.	./.
chr4	100242445	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:30:104:0.038:2	./.	./.	./.	./.	./.
chr4	100260789	rs698	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,75:32:77:0.974:2	0/1:0,54:32:54:1.00:2	0/1:2,80:32:82:0.976:2	0/1:28,28:32:56:0.500:2	./.	0/1:59,42:33:101:0.416:2	./.	./.
chr4	100263965	rs1693482	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,189:33:192:0.984:2	0/1:8,178:32:186:0.957:2	0/1:3,187:32:190:0.984:2	0/1:115,83:33:198:0.419:2	./.	0/1:102,86:33:188:0.457:2	./.	./.
chr4	100264027	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,7:33:55:0.127:2	./.	0/1:188,7:33:195:0.036:2	./.	0/1:187,11:33:198:0.056:2	0/1:193,5:32:198:0.025:2	0/1:195,4:32:199:0.020:2	./.	0/1:185,6:33:192:0.031:2
chr4	100266112	rs1693425	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,166:31:167:0.994:2	0/1:2,136:31:138:0.986:2	0/1:2,168:31:170:0.988:2	0/1:86,84:30:170:0.494:2	./.	0/1:58,42:31:100:0.420:2	./.	./.
chr4	100266133	rs2241894	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:33,44:29:77:0.571:2	0/1:27,35:29:62:0.565:2	0/1:8,11:31:19:0.579:2	./.	./.	./.	./.	./.	./.	./.	0/1:52,57:28:109:0.523:2
chr4	100266330	rs1693426	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,98:33:99:0.990:2	0/1:1,55:31:56:0.982:2	0/1:2,126:33:128:0.984:2	0/1:47,35:33:82:0.427:2	./.	0/1:76,52:34:128:0.406:2	./.	./.
chr4	100266371	rs1789915	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,102:33:106:0.971:2	0/1:1,52:32:53:0.981:2	0/1:2,102:32:104:0.981:2	0/1:38,36:32:74:0.486:2	./.	0/1:69,50:34:119:0.420:2	./.	./.
chr4	100268190	rs283413	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:32:79:1.00:2	0/1:0,44:33:44:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,116:33:116:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,121:33:121:1.00:2	0/1:1,106:32:107:0.991:2	0/1:0,123:33:123:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,95:32:95:1.00:2
chr4	100273833	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,5:32:197:0.025:2	./.	./.	./.	./.	./.	./.
chr4	100341861	rs971074	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,59:32:169:0.349:2	./.	./.	./.	./.	./.	./.	./.
chr4	100349669	rs1573496	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,54:32:112:0.482:2	./.	./.	./.	./.	./.	./.	./.
chr4	100434312	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:32:67:0.060:2	./.	./.
chr4	100443720	rs13143848	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,44:31:78:0.564:2	0/1:22,20:31:42:0.476:2	./.	./.	./.	./.	./.	./.	0/1:42,42:33:84:0.500:2	./.	0/1:44,53:31:97:0.546:2
chr4	100443782	rs13119384	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,22:32:61:0.361:2	0/1:13,11:32:24:0.458:2	./.	./.	./.	./.	./.	./.	0/1:43,14:32:57:0.246:2	./.	0/1:55,11:31:66:0.167:2
chr4	100443784	rs200176388	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,23:30:63:0.365:2	0/1:14,10:31:24:0.417:2	./.	./.	./.	./.	./.	./.	0/1:42,14:30:56:0.250:2	./.	0/1:56,10:30:66:0.152:2
chr4	100443800	rs17029087	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,18:32:55:0.327:2	0/1:12,12:31:24:0.500:2	./.	./.	./.	./.	./.	./.	0/1:46,22:32:68:0.324:2	./.	0/1:51,13:32:64:0.203:2
chr4	100463237	rs74444838	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,66:33:145:0.455:2	./.	./.
chr4	100480369	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,6:33:185:0.032:2	./.	./.	./.
chr4	100503173	rs201464944	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:35:140:0.029:2	./.	./.
chr4	100504566	rs61733139	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,53:33:116:0.457:2
chr4	100504614	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:125,4:32:129:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr4	100504664	rs3816873	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,79:32:79:1.00:2	0/1:0,57:32:57:1.00:2	./.	0/1:46,28:31:74:0.378:2	./.	./.	./.	./.	./.	./.	0/1:56,62:32:118:0.525:2
chr4	100510859	rs991811	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:23,16:32:39:0.410:2	0/1:8,13:32:21:0.619:2	./.	0/1:21,11:30:32:0.344:2	./.	./.	./.	./.	0/1:0,31:33:31:1.00:2	./.	0/1:0,58:32:60:1.00:2
chr4	100512412	rs982424	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,21:33:45:0.467:2	0/1:9,11:33:20:0.550:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	100512919	rs17599091	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,35:33:91:0.385:2	./.	./.	./.	./.	./.	./.	./.
chr4	100516022	rs2306985	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:58,73:33:131:0.557:2	0/1:34,40:32:74:0.541:2	./.	0/1:85,53:33:138:0.384:2	./.	./.	./.	./.	0/1:0,124:33:124:1.00:2	./.	0/1:0,148:33:148:1.00:2
chr4	100518283	rs17533489	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,9:29:33:0.273:2	./.	./.	./.	./.	./.	./.	0/1:5,7:30:12:0.583:2
chr4	100784980	rs3737484	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:33:6:0.667:2	0/1:24,28:31:52:0.538:2	0/1:0,19:31:19:1.00:2	0/1:35,13:32:48:0.271:2	./.	0/1:20,16:32:36:0.444:2	./.	./.	./.
chr4	100787233	rs77036069	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,47:34:85:0.553:2	./.	./.
chr4	100787260	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,6:31:73:0.082:2	./.	./.	./.
chr4	100805207	rs6532835	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:31:50:1.00:2	0/1:0,25:31:25:1.00:2	0/1:8,5:29:13:0.385:2	0/1:42,19:30:61:0.311:2	0/1:0,50:29:50:1.00:2	0/1:27,23:28:50:0.460:2	./.	0/1:38,21:30:59:0.356:2	./.	0/1:0,49:30:49:1.00:2	0/1:0,75:29:76:1.00:2
chr4	100869618	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:30:140:0.029:2	./.	./.	./.	./.	./.
chr4	100869624	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:32:134:0.030:2	./.	./.	./.	./.	./.
chr4	100870015	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:147,7:32:154:0.045:2	./.	./.	./.	./.	./.	./.
chr4	101108876	rs56763427	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,6:36:90:0.067:2	./.	./.
chr4	101108877	rs201713115	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,72:33:161:0.447:2	./.	./.
chr4	101109161	rs3749604	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,6:30:7:0.857:2	0/1:30,33:29:63:0.524:2	0/1:17,29:29:46:0.630:2	0/1:31,27:30:60:0.466:2	./.	./.	./.	./.	./.
chr4	101337130	rs13122163	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,21:30:62:0.339:2	./.	0/1:28,23:31:51:0.451:2	./.	./.	./.	./.	./.
chr4	101368661	rs1157180	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:34:3:1.00:2	./.	./.	./.	0/1:5,9:33:14:0.643:2	0/1:2,6:33:8:0.750:2	0/1:0,21:34:21:1.00:2	0/1:2,8:32:10:0.800:2	./.
chr4	102251501	rs28664200	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,8:31:18:0.444:2	0/1:17,34:32:51:0.667:2	./.	./.	./.	0/1:15,12:33:27:0.444:2	0/1:42,22:30:64:0.344:2
chr4	102751076	rs10516487	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:27,20:33:47:0.426:2	0/1:21,21:32:42:0.500:2	./.	0/1:36,31:31:67:0.463:2	./.	0/1:28,32:31:60:0.533:2	./.	./.	./.	./.	0/1:44,28:32:73:0.389:2
chr4	102751276	rs10516486	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:20,20:32:40:0.500:2	0/1:16,11:32:27:0.407:2	./.	0/1:27,33:32:60:0.550:2	./.	0/1:17,26:31:43:0.605:2	./.	./.	0/1:20,24:33:44:0.545:2	0/1:0,28:32:28:1.00:2	0/1:35,24:32:59:0.407:2
chr4	102816467	rs62321738	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,41:33:105:0.390:2	./.
chr4	102839287	rs3733197	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:28,49:31:77:0.636:2	0/1:17,18:31:35:0.514:2	./.	0/1:32,29:32:61:0.475:2	./.	0/1:30,22:30:52:0.423:2	0/1:0,44:31:44:1.00:2	0/1:48,42:31:90:0.467:2	./.	./.	0/1:40,56:31:97:0.583:2
chr4	102946392	rs17853030	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,21:32:60:0.350:2	./.	./.	./.	./.	./.	./.
chr4	102946404	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,3:34:77:0.039:2	./.	./.
chr4	102965043	rs3113676	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:30:63:1.00:2	0/1:0,37:29:37:1.00:2	0/1:0,13:29:13:1.00:2	0/1:0,54:29:54:1.00:2	0/1:1,25:29:26:0.962:2	0/1:0,67:29:67:1.00:2	0/1:0,40:30:40:1.00:2	0/1:0,49:29:49:1.00:2	0/1:0,61:30:61:1.00:2	0/1:0,58:29:58:1.00:2	0/1:0,71:29:71:1.00:2
chr4	103184239	rs112519623	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,38:32:86:0.442:2	./.	./.	./.
chr4	103188709	rs13107325	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,67:30:138:0.489:2	./.	./.	./.	./.	./.	./.	./.
chr4	103225513	rs11097773	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,68:32:146:0.466:2	./.	0/1:77,59:32:136:0.434:2	./.	0/1:0,171:33:171:1.00:2	./.	./.
chr4	103228734	rs35411892	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,24:32:72:0.333:2	./.	0/1:38,22:32:60:0.367:2	./.	0/1:0,88:33:88:1.00:2	./.	./.
chr4	103505961	rs4648039	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:42,22:32:64:0.344:2	0/1:19,22:32:41:0.537:2	./.	./.	./.	./.	./.	0/1:24,32:32:56:0.571:2	./.	./.	./.
chr4	103514658	rs1609993	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:30:78:1.00:2	0/1:0,35:29:35:1.00:2	0/1:4,8:24:12:0.667:2	0/1:0,66:29:68:1.00:2	0/1:1,61:29:62:0.984:2	0/1:77,50:29:127:0.394:2	0/1:1,56:29:57:0.982:2	0/1:0,104:28:104:1.00:2	0/1:1,85:30:86:0.988:2	0/1:0,82:29:82:1.00:2	0/1:0,85:29:85:1.00:2
chr4	103553372	rs75826658	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:31:12:0.583:2	./.	./.	./.	./.	./.	./.	0/1:43,69:30:112:0.616:2	./.
chr4	103555992	rs2272697	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,128:33:131:0.977:2	0/1:0,86:32:86:1.00:2	0/1:8,6:32:14:0.429:2	0/1:2,132:33:134:0.985:2	0/1:3,138:32:141:0.979:2	0/1:85,88:33:173:0.509:2	0/1:106,86:32:192:0.448:2	0/1:98,84:33:182:0.462:2	0/1:0,139:34:139:1.00:2	0/1:0,124:33:125:1.00:2	./.
chr4	103557077	rs2866413	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:33:63:1.00:2	0/1:0,41:32:41:1.00:2	0/1:2,3:32:5:0.600:2	0/1:0,62:31:62:1.00:2	0/1:0,54:32:54:1.00:2	0/1:49,17:31:66:0.258:2	0/1:41,26:32:67:0.388:2	0/1:51,46:32:97:0.474:2	0/1:0,79:33:79:1.00:2	0/1:0,79:32:79:1.00:2	./.
chr4	103561004	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:33:148:0.027:2
chr4	103571724	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,4:33:79:0.051:2	./.	./.	./.	./.	./.	./.
chr4	103611845	rs227368	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:54,39:32:93:0.419:2	0/1:34,30:32:65:0.469:2	0/1:10,5:33:15:0.333:2	./.	./.	0/1:53,55:31:108:0.509:2	0/1:68,50:32:118:0.424:2	0/1:46,43:33:89:0.483:2	./.	./.	0/1:77,77:33:154:0.500:2
chr4	103722621	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:32:180:0.022:2	./.
chr4	103722647	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,6:30:184:0.033:2	./.	./.	0/1:188,5:32:193:0.026:2	0/1:183,7:28:190:0.037:2
chr4	103722657	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:30:195:0.026:2	0/1:170,6:31:176:0.034:2	0/1:185,4:32:189:0.021:2	./.	0/1:185,4:32:189:0.021:2	0/1:172,7:32:179:0.039:2
chr4	103808515	rs199992363	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:47,12:32:59:0.203:2	0/1:9,13:33:22:0.591:2	./.	0/1:54,17:33:71:0.239:2	0/1:30,12:32:42:0.286:2	0/1:57,19:32:76:0.250:2	./.	0/1:53,15:32:68:0.221:2	0/1:59,12:33:71:0.169:2	./.	0/1:42,13:31:55:0.236:2
chr4	103808519	rs201294540	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:47,12:32:59:0.203:2	0/1:8,13:31:21:0.619:2	./.	0/1:57,17:31:74:0.230:2	0/1:31,12:30:43:0.279:2	0/1:57,19:30:76:0.250:2	./.	0/1:53,15:31:68:0.221:2	0/1:61,12:32:73:0.164:2	./.	0/1:43,13:31:56:0.232:2
chr4	103808572	rs3974627	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:41,8:31:49:0.163:2	0/1:10,5:31:15:0.333:2	./.	0/1:61,7:32:68:0.103:2	0/1:31,3:31:34:0.088:2	0/1:46,10:32:56:0.179:2	./.	0/1:50,5:33:55:0.091:2	0/1:57,4:31:61:0.066:2	./.	./.
chr4	103822298	rs3175325	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:31:15:0.400:2	./.	./.	./.	./.	0/1:5,3:26:8:0.375:2	./.	0/1:6,3:32:9:0.333:2
chr4	103822404	rs58374767	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,28:31:69:0.406:2	0/1:24,10:31:34:0.294:2	0/1:9,4:30:13:0.308:2	0/1:51,21:29:72:0.292:2	0/1:41,5:31:46:0.109:2	0/1:36,25:30:61:0.410:2	0/1:53,9:31:62:0.145:2	0/1:37,20:29:57:0.351:2	0/1:53,32:30:85:0.376:2	0/1:49,19:32:68:0.279:2	0/1:54,26:32:80:0.325:2
chr4	103826685	rs77618489	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:170,16:31:186:0.086:2	0/1:151,16:31:167:0.096:2	./.	0/1:184,9:30:193:0.047:2	0/1:185,9:30:194:0.046:2	0/1:185,6:28:191:0.031:2	./.	0/1:180,13:30:193:0.067:2	0/1:184,9:31:193:0.047:2	0/1:171,15:30:186:0.081:2	0/1:172,18:33:190:0.095:2
chr4	103826757	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:137,11:29:148:0.074:2	0/1:119,17:29:136:0.125:2	./.	0/1:142,18:29:160:0.113:2	0/1:117,8:29:125:0.064:2	0/1:139,10:29:149:0.067:2	./.	0/1:156,16:28:172:0.093:2	0/1:151,10:31:161:0.062:2	0/1:138,15:29:153:0.098:2	0/1:139,26:28:165:0.158:2
chr4	103826768	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,7:32:141:0.050:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:33:159:0.025:2
chr4	103826769	rs200075071	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:129,10:31:139:0.072:2	0/1:107,15:32:122:0.123:2	./.	0/1:138,21:31:159:0.132:2	0/1:124,8:32:132:0.061:2	0/1:140,17:30:157:0.108:2	0/1:101,5:30:106:0.047:2	0/1:152,17:30:169:0.101:2	0/1:146,7:31:153:0.046:2	0/1:142,13:30:155:0.084:2	0/1:131,27:31:159:0.171:2
chr4	103826781	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,6:30:147:0.041:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	103826788	rs201197585	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,14:30:122:0.115:2	./.	./.	0/1:117,8:31:126:0.064:2	./.	./.	0/1:150,15:31:170:0.091:2	0/1:142,5:31:149:0.034:2	0/1:132,11:30:143:0.077:2	./.
chr4	103826800	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:125,6:29:131:0.046:2	./.	./.	0/1:139,5:29:144:0.035:2	./.	0/1:139,4:32:143:0.028:2	./.	./.	./.	./.	0/1:135,4:31:139:0.029:2
chr4	103826803	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:117,7:29:124:0.056:2	./.	./.	0/1:137,5:32:142:0.035:2	./.	0/1:136,4:32:140:0.029:2	./.	0/1:148,4:31:152:0.026:2	./.	./.	./.
chr4	103831616	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,5:28:199:0.025:2	./.	./.	0/1:191,8:33:199:0.040:2	./.	./.
chr4	103831621	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,7:29:194:0.036:2	./.
chr4	103831628	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:32:195:0.021:2	./.
chr4	103831653	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2	./.
chr4	103831676	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:168,8:32:176:0.045:2	0/1:169,4:32:173:0.023:2	./.	./.	./.	./.	./.
chr4	103866360	rs368038580	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:32:71:0.056:2	./.
chr4	103867830	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,8:29:198:0.040:2	./.	./.	./.	./.	./.
chr4	103867843	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:34:194:0.021:2	./.	./.
chr4	103867924	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:121,4:31:125:0.032:2	./.	./.	./.	0/1:175,4:31:179:0.022:2	./.	./.	./.
chr4	103870429	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:147,7:32:154:0.045:2	./.	./.	0/1:173,12:32:185:0.065:2	./.	0/1:159,8:32:167:0.048:2	./.	0/1:166,10:32:176:0.057:2	0/1:152,5:32:157:0.032:2	0/1:148,7:31:155:0.045:2	0/1:175,15:32:190:0.079:2
chr4	103870560	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:105,9:31:114:0.079:2	0/1:51,12:30:63:0.190:2	0/1:13,3:31:16:0.188:2	0/1:111,19:30:130:0.146:2	0/1:86,24:30:110:0.218:2	0/1:110,17:30:127:0.134:2	./.	0/1:89,17:31:106:0.160:2	0/1:113,11:31:124:0.089:2	0/1:83,16:30:99:0.162:2	0/1:130,15:31:145:0.103:2
chr4	103870574	rs202008299	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:95,19:32:114:0.167:2	0/1:47,15:32:62:0.242:2	0/1:12,3:32:15:0.200:2	0/1:107,25:33:132:0.189:2	0/1:84,28:32:112:0.250:2	0/1:97,27:33:124:0.218:2	0/1:59,4:33:63:0.063:2	0/1:83,24:33:107:0.224:2	0/1:108,14:34:122:0.115:2	0/1:79,18:33:97:0.186:2	0/1:111,23:34:134:0.172:2
chr4	103870578	rs79959710	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,21:32:109:0.193:2	0/1:43,18:32:61:0.295:2	0/1:12,3:32:15:0.200:2	0/1:99,31:32:130:0.238:2	0/1:74,29:31:103:0.282:2	0/1:91,32:32:123:0.260:2	0/1:48,8:32:56:0.143:2	0/1:81,31:32:112:0.277:2	0/1:100,19:32:119:0.160:2	0/1:63,27:32:90:0.300:2	0/1:104,23:31:127:0.181:2
chr4	103911069	rs2715591	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:32:63:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,96:32:96:1.00:2
chr4	103912864	rs188290598	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,8:28:20:0.400:2	./.	./.	./.	./.	./.	./.
chr4	103964529	rs2276976	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,19:34:55:0.345:2	./.	./.
chr4	103966060	rs80242031	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,10:18:165:0.061:2
chr4	104000922	rs12508269	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,45:32:99:0.455:2	./.	./.	./.	./.	./.	./.	./.
chr4	104004064	rs79460377	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,3:33:25:0.120:2	./.	./.	./.	./.	./.	./.
chr4	104004074	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,3:33:37:0.081:2	./.	./.	./.	./.	./.	./.	./.
chr4	104012365	rs140261412	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:120,72:29:192:0.375:2	./.	./.	./.	./.	./.	./.	./.
chr4	104013796	rs1054707	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,91:33:193:0.472:2	./.	./.
chr4	104044197	rs61751592	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,54:33:124:0.435:2	0/1:22,34:33:56:0.607:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	104059542	rs2243682	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,39:31:41:0.951:2	./.	./.	./.	./.	0/1:21,25:33:46:0.543:2	./.	./.
chr4	104061993	rs1381657	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,44:32:128:0.344:2	./.	./.
chr4	104062223	rs1381658	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,36:33:80:0.450:2	./.	./.
chr4	104066461	rs2615542	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,55:32:57:0.965:2	./.	./.	./.	./.	0/1:28,37:34:65:0.569:2	./.	./.
chr4	104081920	rs61744934	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,40:30:87:0.460:2
chr4	104082349	rs2251634	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,139:32:141:0.986:2	./.	./.	0/1:110,4:31:114:0.035:2	./.	0/1:2,156:33:158:0.987:2	./.	0/1:85,83:32:168:0.494:2
chr4	104102563	rs17217250	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,170:32:171:0.994:2	./.	./.	./.	./.	0/1:99,80:33:179:0.447:2	./.	./.
chr4	104107043	rs17283278	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,42:32:42:1.00:2	./.	./.	./.	./.	0/1:19,19:33:38:0.500:2	./.	./.
chr4	104117191	rs2290943	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,41:33:42:0.976:2	./.	./.	./.	./.	0/1:19,10:33:29:0.345:2	./.	./.
chr4	106156163	rs61744960	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,26:31:55:0.473:2	./.	./.	./.	./.	0/1:31,23:32:54:0.426:2	./.
chr4	106156187	rs17253672	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,36:31:81:0.444:2	./.	./.	./.	./.	./.
chr4	106157558	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,5:28:110:0.045:2	./.
chr4	106158350	rs75056899	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,18:31:42:0.429:2	0/1:14,12:33:26:0.462:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	106158595	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:32:81:0.049:2	./.
chr4	106159582	rs114672787	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,8:32:16:0.500:2	./.	./.	./.	./.	./.
chr4	106159644	rs6847204	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:31:56:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,9:27:9:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,61:32:61:1.00:2	0/1:1,58:31:59:0.983:2	0/1:0,50:31:50:1.00:2
chr4	106160133	rs56185013	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:31,21:32:52:0.404:2	0/1:12,19:32:31:0.613:2	./.	./.	0/1:20,14:31:34:0.412:2	0/1:31,22:31:53:0.415:2	./.	./.	./.	./.	./.
chr4	106160219	rs376824342	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,4:29:18:0.222:2	./.	./.	./.	./.	./.	./.
chr4	106160231	rs374995916	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,4:32:19:0.211:2	./.	./.	./.	./.	0/1:9,3:34:12:0.250:2	./.
chr4	106160239	rs72665940	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:10,3:32:13:0.231:2	./.	./.	./.	./.	0/1:15,5:24:20:0.250:2	0/1:10,5:28:15:0.333:2	./.	./.	0/1:10,3:27:13:0.231:2
chr4	106160244	rs78302349	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,8:18:26:0.308:2	./.	0/1:12,9:23:21:0.429:2	./.	./.	./.	./.
chr4	106160365	rs7670522	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,15:32:15:1.00:2	./.	0/1:37,31:32:68:0.456:2	./.	0/1:1,81:33:82:0.988:2	0/1:3,88:32:91:0.967:2	0/1:42,56:34:98:0.571:2	0/1:0,126:33:126:1.00:2	0/1:0,111:33:111:1.00:2
chr4	106161271	rs142656667	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,17:29:22:0.773:2	./.	./.	./.	./.	./.
chr4	106162922	rs115417735	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,20:32:44:0.455:2	./.	./.	./.	./.	./.	./.	./.
chr4	106163111	rs2866777	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,8:33:8:1.00:2
chr4	106196480	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:33:82:0.049:2	./.	./.
chr4	106196829	rs34402524	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:99,90:32:189:0.476:2	0/1:98,79:32:177:0.446:2	./.	./.	./.	./.	./.
chr4	106196951	rs2454206	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,18:29:38:0.474:2	./.	0/1:3,35:29:38:0.921:2	0/1:28,26:30:54:0.481:2	0/1:26,23:31:50:0.469:2	0/1:20,13:30:33:0.394:2	0/1:24,29:30:54:0.547:2
chr4	106317429	rs13787	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:136,5:33:141:0.035:2	./.	0/1:7,13:32:20:0.650:2	0/1:184,4:33:188:0.021:2	0/1:69,44:32:113:0.389:2	0/1:92,71:32:163:0.436:2	0/1:2,80:33:82:0.976:2	0/1:102,60:33:162:0.370:2	0/1:0,124:34:124:1.00:2	0/1:75,69:32:144:0.479:2	0/1:123,74:33:197:0.376:2
chr4	106395181	rs4699179	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:30:2:1.00:2	0/1:0,2:31:2:1.00:2	./.	./.	0/1:1,7:28:8:0.875:2	./.	./.	./.	./.	./.	./.
chr4	106474078	rs10032241	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,31:31:74:0.425:2	./.	./.	./.	./.	./.	./.	0/1:43,49:31:92:0.533:2
chr4	106474096	rs6533206	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:29:54:1.00:2	0/1:0,40:28:40:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,53:28:53:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,68:29:68:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,87:29:87:1.00:2	0/1:0,95:30:95:1.00:2	0/1:0,49:29:49:1.00:2	0/1:0,78:29:78:1.00:2
chr4	106604190	rs35370743	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:126,70:32:196:0.357:2	0/1:121,69:32:190:0.363:2	./.	./.	./.	./.	./.	./.
chr4	106604364	rs34072732	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,19:32:52:0.365:2	0/1:20,10:32:30:0.333:2	./.	./.	./.	./.	./.	./.
chr4	106859549	rs35132891	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,9:32:22:0.409:2	0/1:7,9:33:16:0.563:2	./.	0/1:13,16:32:29:0.552:2	0/1:0,47:31:47:1.00:2	0/1:0,41:32:41:1.00:2	0/1:23,13:29:36:0.361:2	./.	0/1:18,26:32:44:0.591:2	0/1:25,18:31:44:0.419:2	./.
chr4	106861730	rs4340795	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,157:30:157:1.00:2	0/1:0,74:29:74:1.00:2	0/1:0,20:29:20:1.00:2	0/1:2,187:30:189:0.989:2	0/1:0,181:29:181:1.00:2	0/1:0,161:29:161:1.00:2	0/1:0,162:29:162:1.00:2	0/1:1,191:30:192:0.995:2	0/1:0,186:30:186:1.00:2	0/1:0,151:30:151:1.00:2	0/1:0,147:29:147:1.00:2
chr4	107133919	rs17036613	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,12:33:17:0.706:2	./.	./.	./.	./.	./.	./.	0/1:110,84:31:194:0.433:2	./.
chr4	107156462	rs34961213	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	0/1:20,9:31:29:0.310:2	./.
chr4	107157623	rs34307452	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.	./.	./.	./.	0/1:19,14:32:33:0.424:2	./.	./.	./.
chr4	107168372	rs79412473	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,9:16:36:0.250:2	0/1:21,6:16:27:0.222:2	0/1:28,6:17:34:0.176:2	./.	0/1:27,8:19:35:0.229:2	./.	0/1:30,9:18:39:0.231:2	./.
chr4	107168386	rs370040550	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,12:12:43:0.279:2	./.	0/1:27,10:11:37:0.270:2	0/1:21,8:14:29:0.276:2	./.	./.	0/1:33,10:12:43:0.233:2	./.
chr4	107168431	rs3775091	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:31:26:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,22:32:23:1.00:2	0/1:0,29:31:29:1.00:2	0/1:1,23:32:24:0.958:2	0/1:0,29:31:29:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,48:32:48:1.00:2
chr4	107171647	rs41277029	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,9:31:20:0.450:2	0/1:11,3:31:14:0.214:2	0/1:1,15:29:16:0.938:2	./.	./.	./.	./.	./.
chr4	107237689	rs115186370	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,69:30:146:0.473:2	./.	0/1:51,37:31:88:0.420:2	./.	./.
chr4	107237723	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:31:178:0.022:2	./.	./.	./.
chr4	107246153	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:33:131:0.031:2	./.	./.	./.	./.
chr4	107248643	rs373122636	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:32:172:0.023:2	./.	./.
chr4	107845198	rs34830201	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,66:31:152:0.434:2	./.	0/1:87,50:31:137:0.365:2	./.	./.	./.	./.	./.
chr4	107845327	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:31:129:0.031:2	./.	./.	./.	./.	./.
chr4	107845794	rs17037102	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:97,89:34:186:0.478:2	0/1:58,51:32:109:0.468:2	./.	./.	./.	./.	./.	./.	./.	0/1:102,67:33:169:0.396:2	./.
chr4	107847043	rs35290077	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,41:30:118:0.347:2	./.	0/1:46,52:29:98:0.531:2	./.	./.	./.	./.	./.
chr4	107956581	rs202160143	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:33:62:0.065:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	108575989	rs3733633	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,35:30:88:0.398:2	./.	./.	0/1:43,30:29:73:0.411:2	0/1:62,31:30:94:0.333:2	./.	./.	0/1:53,49:31:102:0.480:2
chr4	108641300	rs973126	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:33:53:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,86:33:86:1.00:2	0/1:0,95:33:95:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,79:34:79:1.00:2	0/1:0,108:33:108:1.00:2	0/1:0,60:34:60:1.00:2	0/1:0,87:33:87:1.00:2	0/1:0,62:32:62:1.00:2
chr4	108641317	rs1127006	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,3:32:14:0.214:2	0/1:1,85:31:86:0.988:2	0/1:51,40:31:91:0.440:2	0/1:2,56:31:58:0.966:2	0/1:0,77:32:77:1.00:2	0/1:3,90:31:93:0.968:2	0/1:30,24:33:54:0.444:2	0/1:42,40:31:82:0.488:2	0/1:30,29:31:59:0.492:2
chr4	108853107	rs147506864	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,71:32:140:0.507:2	./.	./.	./.
chr4	108853205	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:33:50:0.080:2
chr4	108853206	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:34:80:0.050:2	./.	./.
chr4	108853210	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:34:72:0.056:2	./.	./.
chr4	108931039	rs4956145	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,182:34:183:0.995:2	0/1:0,112:33:112:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,172:33:172:1.00:2	0/1:2,94:32:96:0.979:2	0/1:0,177:32:177:1.00:2	0/1:2,86:33:88:0.977:2	0/1:0,129:32:129:1.00:2	0/1:137,59:34:196:0.301:2	0/1:0,172:33:172:1.00:2	0/1:0,189:33:189:1.00:2
chr4	109086280	rs61752607	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,14:31:25:0.560:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	109683951	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,22:30:78:0.282:2	./.
chr4	109735133	rs2305436	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,25:29:41:0.610:2	0/1:12,13:29:25:0.520:2	./.	0/1:19,26:29:45:0.578:2	0/1:17,15:28:32:0.469:2	0/1:18,19:30:37:0.514:2	0/1:19,18:30:37:0.486:2	0/1:0,43:29:43:1.00:2	0/1:0,45:30:45:1.00:2	0/1:13,14:30:27:0.519:2	./.
chr4	109745336	rs7689008	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,39:30:97:0.402:2	0/1:25,27:30:52:0.519:2	0/1:0,19:29:19:1.00:2	0/1:87,86:30:173:0.497:2	0/1:62,45:29:107:0.421:2	0/1:59,45:30:104:0.433:2	0/1:89,66:29:155:0.426:2	./.	./.	0/1:73,56:30:129:0.434:2	0/1:1,124:30:125:0.992:2
chr4	109769899	rs13135591	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:19,16:31:35:0.457:2	0/1:19,3:31:22:0.136:2	./.	0/1:20,7:31:27:0.259:2	./.	0/1:25,9:29:34:0.265:2	0/1:18,8:31:26:0.308:2	0/1:0,35:30:35:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,19:31:19:1.00:2	0/1:38,26:32:64:0.406:2
chr4	109769942	rs112032233	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,10:28:38:0.263:2	0/1:14,5:29:19:0.263:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	109790319	rs72668338	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,18:31:46:0.391:2	./.	0/1:37,17:31:55:0.315:2	./.	0/1:42,32:32:74:0.432:2	./.	./.
chr4	109817800	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:32:163:0.025:2	./.	./.	./.
chr4	109841743	rs17596705	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,22:32:41:0.537:2	./.	0/1:23,28:33:51:0.549:2	0/1:52,24:33:76:0.316:2	0/1:0,60:33:60:1.00:2	0/1:0,38:32:38:1.00:2	./.
chr4	109841775	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,16:32:28:0.571:2	./.	./.	./.	./.	./.	./.	./.
chr4	109863370	rs17531474	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,15:30:22:0.682:2	./.	0/1:106,88:32:194:0.454:2	./.	0/1:110,82:32:192:0.427:2	./.	0/1:98,98:33:196:0.500:2	./.	./.
chr4	109969337	rs3108954	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,116:32:117:0.991:2	0/1:2,74:32:76:0.974:2	0/1:9,7:32:16:0.438:2	0/1:0,112:32:112:1.00:2	./.	0/1:69,57:31:126:0.452:2	0/1:43,42:32:85:0.494:2	0/1:69,51:31:120:0.425:2	./.	0/1:46,66:32:112:0.589:2	0/1:54,51:32:105:0.486:2
chr4	110384790	rs33911248	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,17:30:50:0.340:2
chr4	110409933	rs77639117	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,8:32:27:0.296:2	./.	./.	./.	./.	./.	./.	./.
chr4	110452555	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,4:31:46:0.087:2	./.	./.	./.	./.	./.	./.
chr4	110581363	rs4698744	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,95:30:95:1.00:2	./.	./.	./.	./.	0/1:49,46:31:95:0.484:2	./.
chr4	110603784	rs3733611	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,38:33:41:0.927:2	0/1:0,21:30:21:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,77:33:78:1.00:2	./.	0/1:0,101:32:101:1.00:2	0/1:2,65:32:67:0.970:2	0/1:1,74:33:75:0.987:2	0/1:0,82:34:82:1.00:2	0/1:32,36:33:68:0.529:2	0/1:0,82:33:82:1.00:2
chr4	110605744	rs13846	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:79,67:32:147:0.459:2	0/1:47,35:31:82:0.427:2	0/1:18,14:31:32:0.438:2	./.	./.	0/1:96,93:31:189:0.492:2	./.	0/1:82,61:31:143:0.427:2	./.	./.	./.
chr4	110624490	rs5030519	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,19:30:32:0.594:2	./.	./.	./.	./.	./.	./.
chr4	110638810	rs2285714	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:100,64:32:164:0.390:2	0/1:60,46:32:106:0.434:2	0/1:17,20:31:37:0.541:2	0/1:1,156:31:157:0.994:2	./.	0/1:89,73:30:162:0.451:2	./.	0/1:1,141:31:142:0.993:2	0/1:89,80:32:169:0.473:2	./.	0/1:86,96:31:182:0.527:2
chr4	110650788	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:33:122:0.033:2
chr4	110663683	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,31:34:74:0.419:2	0/1:28,21:33:49:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	110667613	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:31:61:0.066:2	./.	./.	./.
chr4	110678925	rs11098044	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:32:37:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,54:32:54:1.00:2
chr4	110681505	rs2298749	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:30:3:1.00:2	0/1:51,54:32:105:0.514:2	0/1:1,83:31:84:0.988:2	0/1:39,41:31:80:0.513:2	./.	0/1:61,52:33:114:0.460:2	./.	./.	./.
chr4	110687776	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:33:193:0.021:2	./.	./.	./.	./.
chr4	110723140	rs113612355	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,36:31:89:0.404:2	./.	./.	./.
chr4	110737389	rs2276326	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:27:16:1.00:2	0/1:1,19:28:20:0.950:2	0/1:2,3:29:5:0.600:2	0/1:14,23:27:37:0.622:2	./.	./.	0/1:15,13:28:29:0.464:2	0/1:29,10:28:40:0.256:2	0/1:0,16:27:16:1.00:2	0/1:1,42:27:43:0.977:2	0/1:0,26:26:26:1.00:2
chr4	110765315	rs144856430	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,16:32:41:0.390:2	./.
chr4	110772711	rs17040904	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:33:11:0.636:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	110773067	rs4698797	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,30:31:30:1.00:2	0/1:2,7:31:9:0.778:2	0/1:25,11:31:36:0.306:2	./.	./.	0/1:15,12:30:27:0.444:2	0/1:25,17:31:42:0.405:2	0/1:2,55:32:57:0.965:2	0/1:0,42:32:42:1.00:2	0/1:0,64:32:64:1.00:2
chr4	110790911	rs764205	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,112:31:113:1.00:2	0/1:1,78:31:79:0.987:2	0/1:19,5:30:24:0.208:2	0/1:69,61:31:130:0.469:2	./.	./.	0/1:47,61:31:108:0.565:2	0/1:81,56:30:137:0.409:2	0/1:1,110:32:111:0.991:2	0/1:2,86:31:88:0.977:2	0/1:1,131:31:132:0.992:2
chr4	110791361	rs2347131	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,44:31:107:0.411:2	0/1:45,29:32:74:0.392:2	0/1:116,4:33:120:0.033:2	./.	./.	./.
chr4	110791413	rs2347132	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,76:31:167:0.455:2	0/1:64,55:31:119:0.462:2	./.	./.	./.	./.
chr4	110791543	rs2347133	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,50:32:102:0.490:2	0/1:47,47:33:94:0.500:2	./.	./.	./.	./.
chr4	110882051	rs11568937	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,75:31:193:0.389:2	./.	./.
chr4	110883121	rs11568943	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,10:31:28:0.357:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	110897315	rs11568993	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:80,61:32:141:0.433:2	0/1:47,32:32:79:0.405:2	./.	./.	0/1:106,75:31:182:0.414:2	0/1:102,76:31:178:0.427:2	0/1:82,90:32:172:0.523:2	./.	./.	./.	./.
chr4	110901198	rs2237051	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,122:32:122:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,23:31:23:1.00:2	0/1:1,156:30:157:0.994:2	0/1:75,67:30:142:0.472:2	0/1:96,78:31:174:0.448:2	0/1:96,82:31:178:0.461:2	0/1:96,76:31:172:0.442:2	0/1:0,174:32:174:1.00:2	./.	./.
chr4	110902111	rs11569017	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,10:30:17:0.588:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	110914427	rs4698803	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:28:70:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,87:29:89:1.00:2	0/1:48,32:29:80:0.400:2	0/1:0,69:29:70:1.00:2	0/1:42,52:28:94:0.553:2	0/1:53,51:29:104:0.490:2	0/1:0,71:30:72:1.00:2	0/1:1,74:30:75:0.987:2	./.
chr4	111398208	rs10004516	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,22:31:65:0.338:2	0/1:27,27:31:54:0.500:2	0/1:0,9:31:9:1.00:2	0/1:0,120:31:120:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,97:30:98:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,99:30:99:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,82:30:82:1.00:2	0/1:1,110:30:112:0.991:2
chr4	111409705	rs1126483	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,7:31:20:0.350:2	0/1:6,6:32:12:0.500:2	0/1:0,2:33:2:1.00:2	0/1:13,17:31:30:0.567:2	0/1:12,10:32:22:0.455:2	0/1:0,18:31:18:1.00:2	0/1:0,17:32:17:1.00:2	./.	0/1:24,13:32:37:0.351:2	0/1:7,6:31:13:0.462:2	0/1:12,11:32:23:0.478:2
chr4	111431417	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2
chr4	111431443	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,5:28:197:0.026:2
chr4	111470904	rs138109608	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,36:32:108:0.333:2	./.	./.	./.	./.
chr4	113199075	rs701759	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,19:33:42:0.452:2	0/1:15,18:32:33:0.545:2	0/1:1,5:33:6:0.833:2	0/1:0,83:32:83:1.00:2	0/1:15,29:32:44:0.659:2	0/1:0,60:32:60:1.00:2	0/1:57,3:34:60:0.050:2	./.	./.	0/1:35,36:33:71:0.507:2	0/1:43,32:33:75:0.427:2
chr4	113345147	rs6533616	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,18:31:38:0.474:2	./.	./.	./.	0/1:33,19:31:52:0.365:2
chr4	113346908	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:34:159:0.025:2
chr4	113351818	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:32:65:0.062:2
chr4	113351822	rs61747381	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,22:31:38:0.579:2	0/1:14,14:31:28:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	113352075	rs73841022	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,40:29:100:0.400:2	./.	./.	./.
chr4	113352397	rs2074388	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,31:32:65:0.477:2	0/1:22,18:32:40:0.450:2	0/1:0,14:31:14:1.00:2	0/1:66,36:31:102:0.353:2	0/1:53,31:32:84:0.369:2	./.	0/1:4,101:32:105:0.962:2	0/1:78,63:31:141:0.447:2	0/1:67,55:32:122:0.451:2	./.	0/1:57,40:32:97:0.412:2
chr4	113352628	rs13148353	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,22:29:70:0.314:2	0/1:27,18:29:45:0.400:2	0/1:0,7:30:7:1.00:2	0/1:60,48:30:108:0.444:2	0/1:60,51:29:111:0.459:2	./.	0/1:2,108:29:110:0.982:2	0/1:1,135:29:136:0.993:2	0/1:45,59:31:104:0.567:2	./.	0/1:44,36:29:80:0.450:2
chr4	113352832	rs35633116	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,19:32:61:0.311:2	./.	./.	./.
chr4	113352899	rs2074379	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,23:32:45:0.511:2	0/1:9,9:32:18:0.500:2	0/1:0,9:32:9:1.00:2	0/1:35,34:31:69:0.493:2	0/1:17,25:31:42:0.595:2	./.	0/1:2,34:31:36:0.944:2	0/1:20,24:32:44:0.545:2	0/1:24,25:33:49:0.510:2	./.	0/1:35,18:32:53:0.340:2
chr4	113353052	rs17044681	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	./.	./.	0/1:11,5:33:16:0.313:2
chr4	113353285	rs11726117	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,45:28:86:0.523:2	0/1:20,26:28:46:0.565:2	0/1:3,8:29:11:0.727:2	0/1:49,51:29:100:0.510:2	0/1:54,60:28:114:0.526:2	./.	0/1:0,126:30:126:1.00:2	0/1:1,148:29:149:0.993:2	0/1:69,48:29:117:0.410:2	./.	0/1:43,35:28:78:0.449:2
chr4	113359703	rs231247	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,45:32:97:0.464:2	0/1:32,22:32:54:0.407:2	0/1:11,8:32:19:0.421:2	0/1:55,55:32:110:0.500:2	0/1:50,39:32:89:0.438:2	./.	0/1:1,83:32:85:0.988:2	0/1:0,96:31:97:1.00:2	0/1:50,69:33:119:0.580:2	./.	0/1:59,73:32:132:0.553:2
chr4	113360967	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,5:23:40:0.125:2	./.	./.	./.	./.	0/1:55,10:14:65:0.154:2	./.	./.
chr4	113362316	rs1486868	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:33:14:0.429:2	./.	./.	./.	0/1:119,72:33:191:0.377:2	0/1:100,95:33:195:0.487:2	./.	./.	0/1:97,80:33:177:0.452:2
chr4	113436044	rs901474	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:28:3:1.00:2	./.	./.	./.	0/1:0,3:25:3:1.00:2	./.
chr4	113460821	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:33:170:0.024:2	./.	./.
chr4	113468564	rs78336146	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,15:31:34:0.441:2	./.
chr4	113482146	rs17605622	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,20:32:45:0.444:2	./.	./.	./.	./.
chr4	113524723	rs17669218	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,46:30:90:0.511:2	./.	./.	./.	./.
chr4	113530582	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:33:145:0.028:2	./.	./.
chr4	113539529	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,4:30:69:0.058:2	./.	./.	./.	./.	./.	./.
chr4	113539969	rs7696816	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,24:31:43:0.558:2	0/1:12,15:30:27:0.556:2	0/1:0,3:31:3:1.00:2	0/1:37,25:33:62:0.403:2	0/1:21,20:31:41:0.488:2	0/1:0,37:32:37:1.00:2	0/1:23,24:32:47:0.511:2	0/1:30,27:33:57:0.474:2	0/1:30,29:33:59:0.492:2	0/1:0,32:32:32:1.00:2	0/1:28,20:33:48:0.417:2
chr4	113565835	rs79383654	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,5:30:14:0.357:2	./.	./.	./.	./.	./.	./.
chr4	113568544	rs62317770	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,30:32:60:0.500:2	./.	./.	./.	./.	./.	./.
chr4	114161677	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,3:33:52:0.058:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	114257194	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:32:42:0.095:2	./.
chr4	114257201	rs3736575	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,18:32:38:0.474:2	./.	./.
chr4	114275243	rs33966911	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,13:33:23:0.565:2	0/1:7,8:33:15:0.533:2	./.	./.	./.	0/1:20,10:32:30:0.333:2	./.	./.	./.	0/1:19,4:33:23:0.174:2	./.
chr4	114275548	rs199703727	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:39,12:13:51:0.235:2	./.	./.	./.	0/1:36,8:16:44:0.182:2	0/1:38,12:14:50:0.240:2	0/1:43,15:13:58:0.259:2	0/1:52,19:13:71:0.268:2	0/1:41,7:18:48:0.146:2	0/1:31,13:17:44:0.295:2	0/1:47,14:19:61:0.230:2
chr4	114275942	rs3796928	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,34:33:62:0.548:2	./.	./.
chr4	114276880	rs28377576	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:27,22:33:50:0.449:2	0/1:16,13:33:30:0.448:2	0/1:9,6:34:15:0.400:2	./.	./.	0/1:37,30:33:67:0.448:2	./.	./.	./.	0/1:31,16:33:47:0.340:2	./.
chr4	114276884	rs3733615	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:27,22:32:49:0.449:2	0/1:16,11:32:27:0.407:2	0/1:9,6:32:15:0.400:2	./.	./.	0/1:38,32:32:70:0.457:2	./.	./.	0/1:30,30:33:60:0.500:2	0/1:31,18:33:49:0.367:2	./.
chr4	114278277	rs3733617	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,30:31:77:0.390:2	./.	./.
chr4	114278951	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,3:29:17:0.176:2	./.	./.	./.	./.
chr4	114279422	rs10013743	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,27:33:62:0.435:2	0/1:12,10:32:22:0.455:2	./.	./.	./.	0/1:37,34:32:71:0.479:2	./.	./.	./.	0/1:11,27:33:38:0.711:2	./.
chr4	114279674	rs34270799	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,19:30:33:0.576:2	./.	./.	./.	./.	./.	./.	0/1:16,10:31:26:0.385:2
chr4	114294308	rs2293324	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:42,40:29:82:0.488:2	0/1:24,28:27:52:0.538:2	0/1:9,4:28:13:0.308:2	./.	./.	0/1:74,42:27:116:0.362:2	./.	./.	0/1:61,38:29:99:0.384:2	0/1:57,32:28:89:0.360:2	./.
chr4	114429407	rs11098193	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,11:31:20:0.550:2	0/1:47,56:31:103:0.544:2	0/1:55,41:31:96:0.427:2	./.	0/1:52,42:32:94:0.447:2	./.	0/1:67,54:32:121:0.446:2	./.	./.
chr4	114582860	rs3775975	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,49:32:108:0.458:2
chr4	114823667	rs61730233	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,41:32:78:0.526:2	./.	./.
chr4	114823936	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,4:34:119:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr4	114824514	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:193,4:33:197:0.020:2	./.	./.	./.	./.	./.	./.
chr4	114824531	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:32:191:0.021:2	./.	./.	./.	./.	./.
chr4	115544714	rs6851610	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,84:31:85:1.00:2	0/1:0,56:30:56:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,122:30:122:1.00:2	0/1:1,94:29:95:0.989:2	0/1:0,113:29:113:1.00:2	0/1:0,132:30:132:1.00:2	0/1:0,138:29:139:1.00:2	./.	0/1:0,98:29:98:1.00:2	0/1:1,137:30:138:0.993:2
chr4	115577997	rs34115976	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,46:31:46:1.00:2	./.	./.	./.	0/1:11,21:28:32:0.656:2	0/1:29,26:29:55:0.473:2
chr4	115585198	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:33:142:0.028:2	./.
chr4	115589302	rs11098261	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:33:76:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,93:33:93:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,73:33:73:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,96:33:96:1.00:2	0/1:0,82:33:82:1.00:2	0/1:1,112:33:113:0.991:2
chr4	115749005	rs6843860	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,31:32:63:0.492:2	./.	0/1:42,27:33:69:0.391:2	./.	./.
chr4	115767074	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:121,4:31:125:0.032:2	./.	./.	./.	./.	./.	./.
chr4	115997346	rs138579687	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,43:27:85:0.506:2	./.	./.	./.	./.	./.	./.
chr4	118006014	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:31:146:0.027:2	./.	./.	./.	./.	./.
chr4	118975146	rs13152576	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,44:31:101:0.436:2	0/1:1,60:30:61:0.984:2	./.	./.	./.	./.	./.	./.
chr4	118975269	rs78812192	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,45:31:99:0.455:2	0/1:27,30:31:57:0.526:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	119059289	rs10028980	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,55:30:111:0.495:2	./.	./.	./.	./.	./.	./.
chr4	119161699	rs17049697	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,34:31:62:0.548:2	./.	./.	./.	./.	./.	./.
chr4	119161795	rs617430	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:31:59:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,18:31:18:1.00:2	0/1:47,30:31:77:0.390:2	./.	0/1:46,43:31:89:0.483:2	./.	./.	0/1:44,31:32:75:0.413:2	0/1:40,29:31:69:0.420:2	0/1:49,49:32:98:0.500:2
chr4	119203221	rs17594503	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,25:33:45:0.556:2	./.	./.
chr4	119219909	rs28661939	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,67:31:155:0.432:2	0/1:58,37:30:95:0.389:2	./.	./.	0/1:86,52:31:138:0.377:2	./.	./.	./.
chr4	119237348	rs2292597	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,17:32:36:0.472:2	0/1:3,23:32:26:0.885:2	0/1:24,12:31:36:0.333:2	0/1:1,20:32:21:0.952:2	0/1:2,39:32:41:0.951:2	0/1:31,21:33:52:0.404:2	0/1:25,20:32:45:0.444:2	0/1:20,16:32:36:0.444:2
chr4	119259449	rs145151396	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,65:32:125:0.520:2	./.	./.	./.	./.
chr4	119273712	rs13119545	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,14:24:14:1.00:2	0/1:0,12:25:12:1.00:2	./.	0/1:2,9:26:11:0.818:2	./.	0/1:0,24:24:24:1.00:2	0/1:0,6:24:6:1.00:2	0/1:0,20:25:20:1.00:2	0/1:0,17:26:17:1.00:2	0/1:0,10:23:10:1.00:2	0/1:0,10:28:10:1.00:2
chr4	119652555	rs79301273	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,61:31:126:0.492:2	0/1:55,48:32:103:0.466:2	./.	./.	./.	./.
chr4	119736796	rs2389688	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:53,42:28:97:0.442:2	0/1:40,29:28:69:0.420:2	0/1:4,8:29:12:0.667:2	./.	0/1:56,58:28:114:0.509:2	0/1:0,114:28:114:1.00:2	0/1:69,61:29:130:0.469:2	0/1:2,108:28:110:0.982:2	0/1:70,60:28:130:0.462:2	0/1:1,116:29:117:0.991:2	0/1:53,44:27:97:0.454:2
chr4	119944611	rs1459058	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,12:31:12:1.00:2	0/1:50,52:31:102:0.510:2	0/1:0,90:31:90:1.00:2	0/1:2,94:30:96:0.979:2	0/1:44,36:31:80:0.450:2	0/1:54,63:30:117:0.538:2	0/1:2,93:32:95:0.979:2	0/1:56,44:30:101:0.440:2	0/1:65,54:31:119:0.454:2
chr4	119947985	rs12645298	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,20:32:38:0.526:2	./.	./.	./.	./.
chr4	119948046	rs17263971	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:33,34:32:67:0.507:2	0/1:23,17:31:40:0.425:2	./.	0/1:41,46:33:87:0.529:2	./.	0/1:36,46:32:82:0.561:2	./.	0/1:59,68:32:127:0.535:2	./.	0/1:30,38:32:68:0.559:2	0/1:37,26:33:63:0.413:2
chr4	119951647	rs7698598	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,31:31:31:1.00:2	0/1:7,6:32:13:0.462:2	0/1:0,79:32:79:1.00:2	0/1:27,28:32:55:0.509:2	0/1:0,76:32:76:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,80:32:81:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,35:31:35:1.00:2	0/1:35,27:31:62:0.435:2
chr4	119952955	rs61732241	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:65,65:31:130:0.500:2	0/1:30,33:32:63:0.524:2	./.	./.	./.	./.	0/1:98,66:32:164:0.402:2	./.	./.	./.	./.
chr4	120057741	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:32:171:0.023:2	./.	./.	./.
chr4	120085448	rs7687613	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,27:30:70:0.386:2
chr4	120181724	rs35372126	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,27:29:62:0.435:2	0/1:17,25:29:42:0.595:2	./.	0/1:2,65:30:67:0.970:2	0/1:19,22:28:41:0.537:2	0/1:19,33:30:52:0.635:2	./.	0/1:39,28:29:67:0.418:2	0/1:0,79:30:79:1.00:2	0/1:20,25:30:45:0.556:2	./.
chr4	120214030	rs3749591	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:49,30:32:79:0.380:2	0/1:16,21:31:37:0.568:2	0/1:0,2:34:2:1.00:2	./.	./.	./.	0/1:22,19:32:41:0.463:2	./.	./.	./.	0/1:35,42:31:77:0.545:2
chr4	120240181	rs1511024	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,80:31:185:0.432:2	./.	./.	./.	./.	./.
chr4	120240238	rs1511025	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:75,63:33:138:0.457:2	0/1:44,36:33:80:0.450:2	0/1:9,8:33:17:0.471:2	./.	./.	0/1:62,66:32:128:0.516:2	0/1:30,53:32:83:0.639:2	./.	./.	./.	0/1:71,64:33:135:0.474:2
chr4	120241849	rs4834770	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,19:31:19:1.00:2	0/1:0,20:32:20:1.00:2	./.	0/1:0,35:32:35:1.00:2	0/1:11,11:31:22:0.500:2	0/1:0,21:31:21:1.00:2	0/1:11,5:31:16:0.313:2	./.	0/1:31,8:33:39:0.205:2	0/1:12,5:33:17:0.294:2	0/1:13,15:30:28:0.536:2
chr4	120241902	rs1799883	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:30:44:1.00:2	0/1:0,35:30:35:1.00:2	0/1:7,6:31:13:0.462:2	0/1:2,86:30:88:0.977:2	0/1:26,29:31:55:0.527:2	0/1:1,52:30:53:0.981:2	0/1:39,13:29:52:0.250:2	0/1:42,13:31:55:0.236:2	0/1:57,25:32:82:0.305:2	0/1:43,33:31:76:0.434:2	0/1:0,70:31:70:1.00:2
chr4	120423729	rs3733524	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:21,22:31:43:0.512:2	0/1:13,16:32:29:0.552:2	0/1:0,5:27:5:1.00:2	./.	./.	./.	0/1:23,17:30:40:0.425:2	./.	./.	./.	0/1:38,26:30:64:0.406:2
chr4	120427065	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:33:65:0.062:2	./.	./.	./.	./.	./.
chr4	120427091	rs142272118	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,21:30:55:0.382:2	./.	./.
chr4	120474859	rs11947234	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:59,59:30:118:0.500:2	0/1:46,36:29:82:0.439:2	0/1:7,7:30:14:0.500:2	./.	./.	./.	0/1:48,65:30:113:0.575:2	./.	./.	./.	0/1:108,81:29:189:0.429:2
chr4	120528327	rs3733526	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:31:35:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,56:30:56:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,50:31:50:1.00:2	0/1:20,20:31:40:0.500:2
chr4	120981272	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:33:79:0.051:2	./.	./.	./.
chr4	120981397	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:32:50:0.080:2	./.	./.	./.	./.
chr4	120982045	rs61752609	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,34:31:61:0.557:2	0/1:19,32:30:51:0.627:2	./.	./.	./.	0/1:48,37:31:85:0.435:2	./.	./.	./.	./.	./.
chr4	120986831	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,5:31:95:0.053:2	./.	./.	./.	./.
chr4	121706201	rs12499000	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,26:32:27:0.963:2	./.	0/1:17,10:32:27:0.370:2	0/1:11,9:32:20:0.450:2	./.	0/1:27,20:33:47:0.426:2	./.	0/1:23,29:34:52:0.558:2
chr4	121719544	rs140634372	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,39:31:79:0.494:2
chr4	121738049	rs343192	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,5:33:9:0.556:2	0/1:0,81:33:81:1.00:2	0/1:25,18:32:43:0.419:2	0/1:51,29:31:80:0.363:2	0/1:22,36:33:58:0.621:2	./.	0/1:33,61:33:94:0.649:2	./.	0/1:71,61:33:132:0.462:2
chr4	121738070	rs74320998	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,19:32:59:0.322:2	./.	./.	./.	./.	./.	./.	./.
chr4	121957559	rs34766411	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:95,71:32:166:0.428:2	0/1:72,64:33:136:0.471:2	0/1:6,11:32:17:0.647:2	./.	./.	./.	0/1:59,46:32:105:0.438:2	./.	./.	0/1:87,56:32:143:0.392:2	./.
chr4	121957734	rs1397645	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,152:29:153:0.993:2	0/1:0,105:28:105:1.00:2	0/1:0,18:30:18:1.00:2	0/1:68,67:29:135:0.496:2	0/1:0,117:29:117:1.00:2	0/1:91,60:29:151:0.397:2	0/1:0,124:28:124:1.00:2	0/1:82,84:28:166:0.506:2	0/1:0,140:30:140:1.00:2	0/1:74,54:29:128:0.422:2	0/1:0,162:29:162:1.00:2
chr4	121958091	rs3733558	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:70,83:34:153:0.542:2	0/1:38,48:33:86:0.558:2	./.	0/1:70,87:33:157:0.554:2	0/1:1,113:32:114:0.991:2	0/1:84,68:33:152:0.447:2	0/1:76,78:33:154:0.506:2	0/1:71,88:33:159:0.553:2	0/1:0,138:33:138:1.00:2	./.	0/1:1,134:33:135:0.993:2
chr4	121958187	rs3822230	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:78,90:30:168:0.536:2	0/1:48,61:29:109:0.560:2	./.	0/1:76,93:30:169:0.550:2	0/1:2,167:30:169:0.988:2	0/1:90,86:29:176:0.489:2	0/1:94,72:31:166:0.434:2	0/1:89,92:30:181:0.508:2	0/1:3,172:31:175:0.983:2	./.	0/1:3,168:30:171:0.982:2
chr4	121958691	rs3733559	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:41,38:33:79:0.481:2	0/1:39,33:33:72:0.458:2	0/1:8,7:33:15:0.467:2	./.	./.	./.	0/1:35,36:31:71:0.507:2	./.	./.	0/1:25,48:31:73:0.658:2	./.
chr4	121958697	rs3733560	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,37:33:73:0.507:2	0/1:32,33:33:65:0.508:2	./.	0/1:36,38:32:74:0.514:2	0/1:23,28:31:51:0.549:2	0/1:28,32:31:60:0.533:2	0/1:33,28:33:61:0.459:2	0/1:41,33:32:74:0.446:2	0/1:0,72:33:72:1.00:2	./.	0/1:2,70:33:72:0.972:2
chr4	121966807	rs2276959	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:32:28:1.00:2	0/1:1,21:32:22:0.955:2	0/1:2,3:32:5:0.600:2	0/1:30,11:32:41:0.268:2	0/1:0,31:31:31:1.00:2	0/1:14,10:31:24:0.417:2	0/1:1,18:30:19:0.947:2	0/1:22,12:32:34:0.353:2	0/1:3,29:33:32:0.906:2	0/1:18,8:32:26:0.308:2	0/1:0,47:32:47:1.00:2
chr4	122068316	rs75386686	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,68:32:138:0.493:2
chr4	122075739	rs17051298	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,26:33:55:0.473:2	./.	./.	./.	./.	./.
chr4	122079827	rs74396543	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,21:32:51:0.412:2
chr4	122085203	rs77437633	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,29:32:60:0.483:2	./.
chr4	122250474	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,4:35:71:0.056:2	./.	./.	./.	./.	./.	./.
chr4	122250734	rs2302310	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,6:30:15:0.400:2	0/1:35,32:30:67:0.478:2	./.	0/1:38,27:30:65:0.415:2	0/1:15,21:31:36:0.583:2	./.	0/1:27,34:30:61:0.557:2	./.	0/1:52,43:30:96:0.453:2
chr4	122254014	rs55975435	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,61:30:120:0.508:2	./.
chr4	122254119	rs33977434	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,8:30:25:0.320:2	0/1:90,84:31:174:0.483:2	./.	0/1:89,77:31:166:0.464:2	0/1:107,68:32:175:0.389:2	./.	0/1:104,79:32:183:0.432:2	./.	0/1:118,59:32:177:0.333:2
chr4	122257942	rs4558890	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:32:72:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,103:32:103:1.00:2	0/1:0,103:32:103:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,127:32:127:1.00:2	0/1:0,129:33:129:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,110:33:110:1.00:2
chr4	122257945	rs143184159	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,34:32:74:0.459:2	./.	./.	./.	./.	./.	./.	./.
chr4	122257950	rs2302309	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,40:33:88:0.455:2	0/1:21,24:32:45:0.533:2	0/1:4,5:33:9:0.556:2	0/1:0,82:32:82:1.00:2	./.	./.	./.	0/1:77,74:32:152:0.490:2	./.	0/1:44,55:33:99:0.556:2	0/1:59,63:33:122:0.516:2
chr4	122261613	rs191617942	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,37:32:118:0.316:2
chr4	122301595	rs55693553	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,94:30:188:0.500:2	./.	./.	./.
chr4	122301597	rs34270076	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,93:32:188:0.495:2	./.	./.	./.
chr4	122301622	rs17438900	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,36:29:104:0.346:2	0/1:50,39:28:89:0.438:2	./.	./.	./.	0/1:80,48:28:128:0.375:2	./.	./.	./.	./.	./.
chr4	122617718	rs2306417	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,45:30:129:0.349:2	./.	0/1:70,38:30:108:0.352:2	./.	0/1:64,41:29:105:0.390:2
chr4	122617745	rs1131239	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,51:31:155:0.331:2	./.	0/1:74,47:32:121:0.388:2	./.	0/1:69,48:32:117:0.410:2
chr4	122683007	rs4370153	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,144:31:148:0.973:2	0/1:2,142:32:145:0.986:2	0/1:20,19:31:39:0.487:2	0/1:0,147:31:147:1.00:2	./.	0/1:80,78:31:158:0.494:2	0/1:0,156:32:156:1.00:2	0/1:92,66:31:158:0.418:2	0/1:0,147:32:147:1.00:2	0/1:0,159:31:159:1.00:2	0/1:84,92:31:176:0.523:2
chr4	122735142	rs1803183	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,26:32:61:0.426:2	./.	./.	./.	./.
chr4	122737965	rs1051881	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,19:32:43:0.442:2	./.	./.	./.	./.
chr4	122741807	rs769243	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,33:31:82:0.402:2	./.	./.	./.	./.
chr4	122742217	rs769242	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,153:33:153:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,148:33:148:1.00:2	0/1:0,111:32:111:1.00:2	0/1:65,69:32:134:0.515:2	0/1:2,112:32:114:0.982:2	0/1:52,65:32:117:0.556:2	0/1:0,129:33:129:1.00:2	0/1:0,145:33:145:1.00:2	0/1:0,143:33:143:1.00:2
chr4	122780332	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,4:32:70:0.057:2	./.	./.	./.	./.	./.	./.	./.
chr4	122791484	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:32:157:0.025:2
chr4	122824052	rs11732666	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,49:31:106:0.462:2	./.	./.	./.	0/1:68,45:32:113:0.398:2	./.
chr4	122854116	rs13121031	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,25:29:49:0.510:2	./.	0/1:26,21:29:47:0.447:2	0/1:20,15:29:35:0.429:2
chr4	122872719	rs1396082	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	0/1:0,2:31:2:1.00:2	./.	0/1:0,2:31:2:1.00:2	./.	./.
chr4	123113428	rs74643640	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,73:33:144:0.510:2	./.	./.	./.	0/1:65,61:32:127:0.484:2	./.	./.	./.
chr4	123145751	rs7658836	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:94,83:32:177:0.469:2	0/1:43,60:32:103:0.583:2	0/1:0,19:32:19:1.00:2	./.	0/1:76,111:32:187:0.594:2	./.	0/1:193,5:31:198:0.025:2	./.	./.	0/1:95,100:32:195:0.513:2	./.
chr4	123150286	rs6848868	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:56,63:32:119:0.529:2	0/1:46,40:32:86:0.465:2	./.	0/1:82,67:32:149:0.450:2	./.	./.	0/1:3,99:32:102:0.971:2	./.	0/1:85,61:33:146:0.418:2	./.	0/1:78,79:31:158:0.503:2
chr4	123151089	rs186329526	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,19:32:37:0.514:2	./.	./.	./.	./.	./.	./.	./.
chr4	123171659	rs56363411	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,38:33:96:0.396:2	./.	./.
chr4	123175966	rs80034298	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,20:30:39:0.513:2	./.	./.	./.	./.	./.	./.	./.
chr4	123176378	rs181184103	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,82:32:162:0.506:2	./.	./.	./.	./.	./.	./.
chr4	123179900	rs45510500	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,48:33:77:0.623:2	./.	./.	./.
chr4	123185531	rs80210427	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,6:21:77:0.078:2	./.	./.	./.	./.	0/1:89,7:19:96:0.073:2	0/1:102,10:22:113:0.089:2	./.	0/1:75,7:21:82:0.085:2	./.	./.
chr4	123192383	rs45574236	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:81,77:33:158:0.487:2	0/1:22,46:32:68:0.676:2	0/1:1,19:32:20:0.950:2	./.	0/1:77,77:32:154:0.500:2	./.	./.	./.	./.	0/1:71,72:33:143:0.503:2	./.
chr4	123222516	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:33:178:0.022:2
chr4	123229132	rs7688384	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:59,57:33:116:0.491:2	0/1:37,27:32:64:0.422:2	0/1:0,15:32:15:1.00:2	./.	0/1:49,37:32:86:0.430:2	./.	./.	0/1:48,56:32:104:0.538:2	./.	0/1:44,39:33:83:0.470:2	./.
chr4	123234764	rs183610611	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:30:115:0.035:2	./.
chr4	123234804	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:31:161:0.025:2	./.
chr4	123237640	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:33:175:0.023:2	./.	./.	./.	./.	./.
chr4	123237664	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:33:119:0.034:2	./.
chr4	123268859	rs2306369	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,78:33:178:0.438:2	./.	./.	./.	0/1:87,81:32:168:0.482:2	./.	./.	./.
chr4	123276961	rs62321696	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,61:31:169:0.361:2
chr4	123277021	rs142747603	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,72:32:189:0.381:2
chr4	123280860	rs1127348	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,17:30:45:0.378:2	./.	./.	./.	0/1:55,23:33:78:0.295:2	0/1:27,21:32:48:0.438:2	./.
chr4	123377482	rs2069763	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,46:31:111:0.414:2	0/1:72,42:30:114:0.368:2	./.	0/1:66,37:31:103:0.359:2	0/1:78,52:32:130:0.400:2	0/1:49,44:31:93:0.473:2	./.
chr4	123536947	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,60:32:121:0.496:2	0/1:65,38:32:103:0.369:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	123536963	rs4833837	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:32:103:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,93:31:93:1.00:2	0/1:38,18:31:56:0.321:2	0/1:0,86:30:86:1.00:2	0/1:0,54:31:54:1.00:2	0/1:43,39:31:82:0.476:2	0/1:47,66:32:113:0.584:2	0/1:51,38:31:89:0.427:2	0/1:0,114:32:114:1.00:2
chr4	123663098	rs17006077	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:34:197:0.020:2	./.	./.	./.
chr4	123664204	rs309370	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:33:9:0.333:2	./.	0/1:26,23:32:49:0.469:2	0/1:27,18:33:45:0.400:2	0/1:26,17:32:43:0.395:2	0/1:32,30:33:62:0.484:2	./.	0/1:29,26:32:55:0.473:2	0/1:34,34:32:68:0.500:2
chr4	123664427	rs13135766	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,31:32:126:0.246:2	./.	0/1:117,37:33:156:0.240:2	./.	./.	./.
chr4	123664445	rs2292493	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,12:30:19:0.632:2	./.	0/1:82,86:31:168:0.512:2	./.	0/1:88,89:31:177:0.503:2	./.	./.	0/1:71,60:31:131:0.458:2	0/1:85,83:31:168:0.494:2
chr4	123664446	rs13135778	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,35:32:119:0.294:2	./.	0/1:111,35:32:146:0.240:2	./.	./.	./.
chr4	123664457	rs13135445	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,36:32:112:0.321:2	./.	0/1:101,31:31:132:0.235:2	./.	./.	./.
chr4	123664458	rs140675688	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:34:162:0.025:2	./.	./.	./.	./.
chr4	123664919	rs13102440	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,21:31:37:0.568:2	./.	0/1:10,14:31:24:0.583:2	./.	./.	./.
chr4	123665428	rs4833843	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,40:29:67:0.597:2	./.	0/1:31,37:31:68:0.544:2	./.	./.	0/1:32,42:31:74:0.568:2	0/1:47,57:30:105:0.548:2
chr4	123665991	rs309386	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:32:13:0.462:2	./.	0/1:47,35:32:82:0.427:2	0/1:40,42:32:82:0.512:2	0/1:35,31:33:66:0.470:2	0/1:35,29:32:64:0.453:2	./.	0/1:35,17:33:52:0.327:2	0/1:65,46:33:111:0.414:2
chr4	123814308	rs1048201	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,27:33:52:0.519:2	0/1:14,11:32:25:0.440:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,22:32:58:0.379:2
chr4	123838758	rs12648093	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,137:30:139:0.986:2	0/1:0,53:30:53:1.00:2	0/1:0,25:30:25:1.00:2	0/1:1,150:30:151:0.993:2	./.	./.	0/1:0,127:30:127:1.00:2	0/1:0,129:30:129:1.00:2	0/1:93,67:31:160:0.419:2	0/1:1,142:30:143:0.993:2	0/1:0,118:30:118:1.00:2
chr4	123843716	rs13134412	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,4:28:4:1.00:2	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	0/1:0,3:25:3:1.00:2	./.	./.	./.
chr4	123900457	rs62324113	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,53:31:143:0.371:2
chr4	123949389	rs35343500	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,25:32:52:0.481:2	./.	./.	./.	./.	./.	./.
chr4	124235130	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,6:30:128:0.047:2	./.
chr4	124323738	rs300574	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,38:32:89:0.427:2	0/1:35,15:33:50:0.300:2	0/1:7,8:33:15:0.533:2	0/1:1,80:33:81:0.988:2	0/1:23,25:32:48:0.521:2	0/1:37,38:32:75:0.507:2	0/1:33,25:32:58:0.431:2	0/1:7,86:33:93:0.925:2	0/1:1,87:34:88:0.989:2	0/1:36,32:33:68:0.471:2	0/1:0,128:33:128:1.00:2
chr4	124323783	rs300575	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:26,23:32:49:0.469:2	0/1:13,7:32:20:0.350:2	./.	./.	./.	./.	0/1:20,22:32:42:0.524:2	./.	./.	./.	./.
chr4	124324233	rs150615428	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,28:32:70:0.400:2	./.	0/1:51,31:32:82:0.378:2
chr4	124324859	rs72684641	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,16:33:53:0.302:2	0/1:11,21:32:32:0.656:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	125590478	rs1874748	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:79,69:28:148:0.466:2	0/1:70,46:29:116:0.397:2	./.	./.	0/1:60,49:28:109:0.450:2	./.	0/1:1,101:28:102:0.990:2	./.	./.	./.	./.
chr4	125591387	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,5:28:132:0.038:2
chr4	125591423	rs3822116	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:64,63:32:127:0.496:2	0/1:43,51:32:94:0.543:2	./.	./.	0/1:76,62:32:138:0.449:2	./.	./.	./.	./.	./.	./.
chr4	125591687	rs3733471	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:97,87:29:185:0.473:2	0/1:59,45:28:104:0.433:2	./.	./.	0/1:77,73:29:150:0.487:2	0/1:0,188:29:188:1.00:2	./.	./.	./.	./.	./.
chr4	125592065	rs10018651	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:61,61:32:122:0.500:2	0/1:37,38:33:75:0.507:2	0/1:7,6:32:13:0.462:2	./.	0/1:69,47:31:116:0.405:2	0/1:0,101:32:101:1.00:2	0/1:1,124:32:125:0.992:2	./.	./.	./.	./.
chr4	125592440	rs3733472	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,17:32:32:0.531:2	./.	./.	0/1:2,164:32:166:0.988:2	./.	./.	./.	./.	./.
chr4	126237971	rs72928772	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,20:30:38:0.526:2	0/1:11,17:32:28:0.607:2	./.	0/1:29,26:31:55:0.473:2	0/1:26,27:31:53:0.509:2	./.	0/1:39,31:31:70:0.443:2	0/1:35,29:30:64:0.453:2	./.	0/1:1,34:30:35:0.971:2	./.
chr4	126238924	rs6847454	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,52:32:91:0.571:2	0/1:26,20:32:46:0.435:2	0/1:0,11:32:11:1.00:2	0/1:0,101:32:101:1.00:2	0/1:29,50:32:79:0.633:2	0/1:0,101:32:101:1.00:2	0/1:1,91:32:92:0.989:2	0/1:1,123:32:124:0.992:2	./.	0/1:0,115:33:115:1.00:2	0/1:43,50:33:93:0.538:2
chr4	126239986	rs1039808	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,60:31:119:0.504:2	0/1:43,30:31:73:0.411:2	0/1:0,12:30:12:1.00:2	0/1:2,137:31:139:0.986:2	0/1:72,72:30:144:0.500:2	0/1:0,136:31:136:1.00:2	0/1:3,172:31:175:0.983:2	0/1:5,115:31:120:0.958:2	./.	0/1:1,122:31:123:0.992:2	0/1:69,56:30:125:0.448:2
chr4	126240510	rs2940779	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,22:34:24:0.917:2	0/1:0,10:33:10:1.00:2	./.	0/1:0,32:33:32:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,20:33:20:1.00:2	0/1:1,22:33:23:0.957:2	0/1:0,19:32:19:1.00:2	./.	0/1:0,9:33:9:1.00:2	0/1:0,25:33:25:1.00:2
chr4	126241335	rs36052762	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,52:32:93:0.559:2
chr4	126241871	rs2710555	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:31:63:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,75:31:75:1.00:2	0/1:1,71:31:72:0.986:2	0/1:0,73:31:73:1.00:2	./.	0/1:0,63:32:63:1.00:2	0/1:0,87:32:87:1.00:2
chr4	126329675	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:26:41:0.098:2	./.
chr4	126329789	rs958415	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:29:63:1.00:2	0/1:0,46:29:46:1.00:2	0/1:0,3:27:3:1.00:2	0/1:0,55:29:55:1.00:2	0/1:0,41:28:41:1.00:2	0/1:0,37:28:37:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,44:28:44:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,39:28:39:1.00:2	0/1:0,66:29:67:1.00:2
chr4	126336168	rs188126059	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:31:7:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	126336703	rs17009618	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,59:30:129:0.457:2
chr4	126369872	rs988863	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:32:29:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,56:33:58:1.00:2
chr4	126372570	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,4:31:73:0.055:2	./.	./.	./.	./.	./.	./.
chr4	126372742	rs1567047	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:52,46:31:98:0.469:2	0/1:37,30:31:67:0.448:2	./.	0/1:58,55:31:113:0.487:2	0/1:49,35:31:84:0.417:2	0/1:75,69:30:144:0.479:2	0/1:56,47:31:103:0.456:2	0/1:69,46:31:115:0.400:2	./.	0/1:3,60:30:63:0.952:2	0/1:68,46:31:114:0.404:2
chr4	126372975	rs76491994	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,25:32:53:0.472:2	./.	./.	./.	./.	./.	./.
chr4	126373789	rs12650153	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:32:42:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,53:32:53:1.00:2
chr4	126389831	rs138019311	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,30:33:65:0.462:2	0/1:17,9:32:26:0.346:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	126397321	rs17009761	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,38:33:97:0.392:2	0/1:54,31:33:85:0.365:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,57:32:134:0.425:2
chr4	126402890	rs6824160	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,18:31:39:0.462:2	0/1:15,17:31:32:0.531:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,38:31:91:0.418:2
chr4	126408532	rs78040862	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,16:30:32:0.516:2	0/1:14,6:31:20:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	126408586	rs17009825	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,32:32:60:0.533:2	./.	./.	./.
chr4	126411576	rs75469760	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,26:31:44:0.591:2	./.	./.	./.
chr4	126411594	rs62312781	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,16:33:50:0.320:2	0/1:19,13:31:32:0.406:2	0/1:27,22:32:49:0.449:2	0/1:32,16:32:48:0.333:2	./.	0/1:0,51:33:51:1.00:2	./.	./.
chr4	126411801	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:31:50:0.080:2	./.	./.	./.	./.	./.
chr4	126412154	rs72675395	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,14:32:35:0.400:2	./.	./.	./.
chr4	126412575	rs1014866	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,133:32:133:1.00:2	0/1:0,97:32:97:1.00:2	./.	0/1:100,81:32:181:0.448:2	0/1:81,48:32:129:0.372:2	0/1:94,98:32:192:0.510:2	0/1:85,72:32:157:0.459:2	0/1:2,163:32:165:0.988:2	./.	0/1:0,128:33:129:1.00:2	0/1:6,178:32:185:0.967:2
chr4	126412891	rs1014867	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:32:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	128565000	rs3749507	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:93,97:31:190:0.511:2	0/1:56,57:32:113:0.504:2	0/1:20,18:31:38:0.474:2	0/1:118,78:32:196:0.398:2	0/1:7,176:32:183:0.962:2	0/1:101,89:32:190:0.468:2	0/1:2,189:32:191:0.990:2	0/1:1,192:32:193:0.995:2	0/1:0,188:33:188:1.00:2	0/1:107,87:31:194:0.448:2	0/1:1,169:32:170:0.994:2
chr4	128584580	rs4833380	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,51:32:117:0.436:2	0/1:44,25:32:69:0.362:2	0/1:0,21:32:21:1.00:2	0/1:61,75:32:136:0.551:2	0/1:0,72:31:72:1.00:2	0/1:72,67:31:139:0.482:2	0/1:0,103:31:103:1.00:2	0/1:3,131:31:134:0.978:2	0/1:0,127:32:127:1.00:2	0/1:62,60:32:122:0.492:2	0/1:0,144:32:144:1.00:2
chr4	128590299	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,4:32:47:0.085:2	./.	./.	./.	./.	./.	./.	./.
chr4	128627775	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:33:196:0.020:2	./.
chr4	128689936	rs2305958	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,17:29:44:0.386:2	0/1:13,15:28:28:0.536:2	0/1:0,4:27:4:1.00:2	0/1:19,15:29:34:0.441:2	0/1:0,31:29:31:1.00:2	0/1:39,19:29:58:0.328:2	0/1:2,19:29:21:0.905:2	0/1:0,54:29:54:1.00:2	0/1:0,49:29:49:1.00:2	0/1:22,18:28:40:0.450:2	0/1:0,74:29:74:1.00:2
chr4	128723042	rs1380154	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,46:29:104:0.442:2	0/1:14,27:28:41:0.659:2	0/1:0,5:28:5:1.00:2	0/1:76,38:29:114:0.333:2	0/1:0,67:28:67:1.00:2	0/1:45,62:28:107:0.579:2	0/1:0,73:29:73:1.00:2	0/1:0,109:29:109:1.00:2	0/1:2,116:30:118:0.983:2	0/1:63,31:29:94:0.330:2	0/1:0,129:30:129:1.00:2
chr4	128741710	rs35518193	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,7:33:8:0.875:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	128753930	rs150262621	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,35:29:69:0.507:2	./.	0/1:48,35:31:83:0.422:2	./.	./.
chr4	128807219	rs3811740	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,50:30:102:0.490:2	0/1:21,21:31:42:0.500:2	0/1:0,5:30:5:1.00:2	0/1:56,42:30:98:0.429:2	0/1:0,49:29:49:1.00:2	0/1:39,40:30:79:0.506:2	0/1:0,40:30:41:1.00:2	0/1:0,69:30:69:1.00:2	0/1:1,70:31:71:0.986:2	0/1:39,42:30:81:0.519:2	0/1:1,114:31:115:0.991:2
chr4	128811117	rs56043017	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,28:31:65:0.431:2	./.	./.	./.	./.	./.	./.
chr4	128814964	rs17012739	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,77:31:135:0.570:2	0/1:43,36:31:79:0.456:2	0/1:0,19:31:19:1.00:2	0/1:88,108:31:196:0.551:2	0/1:0,127:31:127:1.00:2	0/1:101,79:30:180:0.439:2	0/1:2,148:31:150:0.987:2	0/1:0,189:30:189:1.00:2	0/1:0,174:31:174:1.00:2	0/1:95,74:31:169:0.438:2	0/1:0,162:31:163:1.00:2
chr4	128815030	rs13129689	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,53:32:134:0.396:2	./.	./.	./.	./.	./.
chr4	128818021	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:30:128:0.031:2	./.	./.	./.	./.	./.
chr4	128819594	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,4:33:103:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr4	128819618	rs41278099	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,55:30:133:0.414:2	./.	./.	./.
chr4	128905553	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:32:183:0.022:2	./.	./.	./.
chr4	128951703	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,31:33:57:0.544:2	0/1:26,18:32:44:0.409:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	128998982	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,4:31:52:0.077:2	./.	./.	./.	./.	./.	./.
chr4	129012181	rs2306054	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,9:32:24:0.375:2	0/1:5,11:31:16:0.688:2	0/1:0,4:31:4:1.00:2	0/1:18,11:32:29:0.379:2	0/1:0,16:31:16:1.00:2	0/1:19,16:31:35:0.457:2	0/1:0,14:33:14:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,25:33:25:1.00:2	0/1:17,12:32:29:0.414:2	0/1:0,37:32:37:1.00:2
chr4	129012233	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,16:28:47:0.340:2
chr4	129012638	rs1064205	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,29:31:72:0.403:2	0/1:19,17:30:36:0.472:2	0/1:0,4:32:4:1.00:2	0/1:44,36:30:80:0.450:2	0/1:0,53:29:53:1.00:2	0/1:50,32:30:82:0.390:2	0/1:0,72:30:72:1.00:2	0/1:2,72:30:74:0.973:2	0/1:1,85:31:86:0.988:2	0/1:36,35:30:71:0.493:2	0/1:1,74:30:75:0.987:2
chr4	129028382	rs183387342	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,62:33:144:0.431:2	./.	./.
chr4	129043204	rs12508837	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,70:30:129:0.543:2	0/1:37,56:29:93:0.602:2	0/1:0,13:31:13:1.00:2	0/1:61,82:30:143:0.573:2	0/1:3,95:29:98:0.969:2	0/1:55,72:30:127:0.567:2	0/1:2,102:29:104:0.981:2	0/1:5,153:30:159:0.968:2	0/1:2,156:31:158:0.987:2	0/1:75,55:31:130:0.423:2	0/1:0,151:30:151:1.00:2
chr4	129043286	rs3733320	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,43:32:90:0.483:2	0/1:29,25:32:54:0.463:2	0/1:0,15:30:15:1.00:2	0/1:32,47:32:79:0.595:2	0/1:0,50:31:50:1.00:2	0/1:49,46:31:95:0.484:2	0/1:1,57:32:58:0.983:2	0/1:1,71:31:72:0.986:2	0/1:0,92:33:92:1.00:2	0/1:35,33:32:68:0.485:2	0/1:0,102:31:102:1.00:2
chr4	129100643	rs12645577	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,28:32:59:0.475:2	0/1:30,14:32:44:0.318:2	0/1:0,4:31:4:1.00:2	0/1:21,35:32:56:0.625:2	0/1:0,51:31:51:1.00:2	0/1:50,35:32:85:0.412:2	0/1:0,53:31:53:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,84:32:84:1.00:2	0/1:23,36:32:59:0.610:2	0/1:0,98:31:98:1.00:2
chr4	129857935	rs116133992	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,45:30:113:0.398:2	0/1:49,33:31:82:0.402:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	129867280	rs10028124	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:31:63:1.00:2	0/1:0,55:31:55:1.00:2	0/1:4,8:30:12:0.667:2	0/1:43,31:31:74:0.419:2	0/1:0,59:30:59:1.00:2	0/1:46,52:30:98:0.531:2	./.	0/1:0,100:31:100:1.00:2	0/1:54,50:32:105:0.481:2	0/1:51,44:31:95:0.463:2	0/1:56,66:31:122:0.541:2
chr4	129878265	rs35732875	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,71:32:159:0.447:2	./.	./.	./.	./.	./.	./.	./.
chr4	129913345	rs13151322	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,14:32:23:0.609:2	./.	./.	./.	0/1:0,8:32:8:1.00:2	./.	./.	./.
chr4	129924977	rs3113487	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:33:51:1.00:2	0/1:0,26:32:26:1.00:2	0/1:6,9:31:15:0.600:2	0/1:27,41:32:68:0.603:2	0/1:0,32:31:32:1.00:2	0/1:33,27:31:60:0.450:2	0/1:0,31:32:31:1.00:2	./.	0/1:0,73:33:73:1.00:2	0/1:1,50:32:51:0.980:2	0/1:0,79:32:79:1.00:2
chr4	130023884	rs35199409	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,31:31:91:0.341:2	./.	./.	./.	0/1:2,81:32:83:0.976:2	./.	./.	./.
chr4	130030644	rs2271570	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:31,36:31:67:0.537:2	0/1:17,28:32:45:0.622:2	./.	0/1:33,26:32:59:0.441:2	./.	0/1:49,38:31:87:0.437:2	./.	0/1:2,34:32:36:0.944:2	./.	./.	./.
chr4	130030652	rs337277	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:33:75:1.00:2	0/1:1,42:32:43:0.977:2	0/1:0,9:33:9:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,47:33:47:1.00:2	0/1:2,40:33:42:0.952:2	0/1:0,93:34:93:1.00:2	0/1:0,76:33:76:1.00:2	0/1:0,76:33:76:1.00:2
chr4	130030783	rs114250643	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,27:32:61:0.443:2
chr4	130032843	rs17351999	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,19:29:59:0.322:2	0/1:24,15:29:39:0.385:2	./.	./.	./.	0/1:36,19:28:55:0.345:2	./.	./.	./.	./.	./.
chr4	134072264	rs13144059	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:29:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	134073210	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,4:33:18:0.222:2	./.	./.
chr4	134073706	rs115671631	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,13:31:30:0.433:2	./.	./.	./.	./.	./.	./.
chr4	134074058	rs3749589	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:92,73:29:165:0.442:2	0/1:56,43:28:99:0.434:2	0/1:0,24:30:24:1.00:2	0/1:1,190:28:191:0.995:2	./.	0/1:116,82:29:199:0.414:2	0/1:96,100:28:196:0.510:2	0/1:97,95:29:192:0.495:2	0/1:117,73:29:190:0.384:2	0/1:69,83:29:152:0.546:2	0/1:95,101:28:196:0.515:2
chr4	134074247	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.	./.	./.	./.
chr4	134076153	rs2271171	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,3:29:14:0.214:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	135121066	rs11099273	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:30:3:1.00:2	0/1:52,23:33:75:0.307:2	0/1:40,24:32:64:0.375:2	./.	0/1:38,35:32:73:0.479:2	0/1:42,40:32:82:0.488:2	./.	0/1:24,26:32:50:0.520:2	./.
chr4	135121368	rs2044116	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,12:28:22:0.545:2	0/1:8,18:28:26:0.692:2	./.	0/1:8,9:29:17:0.529:2	0/1:19,8:30:27:0.296:2	./.	0/1:8,9:29:17:0.529:2	./.
chr4	135121601	rs10009368	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:30:9:1.00:2	0/1:59,45:30:104:0.433:2	0/1:34,36:30:70:0.514:2	./.	0/1:40,38:29:78:0.487:2	0/1:36,50:30:86:0.581:2	./.	0/1:49,31:30:82:0.388:2	./.
chr4	135122036	rs201884180	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,7:19:44:0.159:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	138442634	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:150,6:30:157:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr4	138449683	rs10018837	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:60,45:32:105:0.429:2	0/1:32,25:33:57:0.439:2	0/1:1,10:29:11:0.909:2	./.	0/1:94,50:32:144:0.347:2	0/1:64,51:32:115:0.443:2	0/1:78,39:33:117:0.333:2	0/1:86,69:32:155:0.445:2	0/1:66,82:33:148:0.554:2	0/1:88,56:32:144:0.389:2	0/1:79,49:32:128:0.383:2
chr4	138452685	rs189691981	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,25:32:48:0.521:2	./.
chr4	138452808	rs148843120	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,30:30:56:0.536:2	./.	./.	./.	./.	./.	./.
chr4	139100372	rs17850855	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:33:45:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,36:33:36:1.00:2	0/1:0,59:33:59:1.00:2
chr4	139135799	rs11944083	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,10:32:15:0.667:2	0/1:3,10:33:13:0.769:2	./.	0/1:10,8:32:18:0.444:2	0/1:0,24:32:24:1.00:2	./.	0/1:5,7:33:12:0.583:2	./.	./.	./.	./.
chr4	139140494	rs6838248	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,58:29:125:0.464:2	./.	0/1:0,88:29:88:1.00:2	0/1:73,32:30:105:0.305:2	0/1:72,48:29:120:0.400:2	0/1:95,54:30:149:0.362:2	0/1:56,44:30:100:0.440:2	0/1:2,143:29:145:0.986:2
chr4	139964296	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:31:61:0.066:2	./.	./.	./.
chr4	139980685	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:34:91:0.044:2	./.	./.
chr4	139983050	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,4:29:75:0.053:2	./.	./.	./.	./.	./.	./.
chr4	140005294	rs4863628	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,29:32:29:1.00:2	0/1:0,15:32:15:1.00:2	./.	0/1:0,41:33:41:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,65:33:65:1.00:2	0/1:0,60:33:60:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,22:33:22:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,29:31:29:1.00:2
chr4	140058849	rs62623564	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,46:32:92:0.500:2	./.	./.	./.
chr4	140188094	rs3208941	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,67:30:149:0.450:2	0/1:61,54:29:115:0.470:2	./.
chr4	140278605	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:34:147:0.027:2
chr4	140299978	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:31:148:0.027:2	./.	./.	./.
chr4	140375512	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:30:89:0.045:2	./.	./.	./.	./.
chr4	140450309	rs34007623	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,44:30:95:0.463:2	./.	./.	./.	./.	./.	./.
chr4	140625183	rs147869298	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,62:33:135:0.459:2	./.	./.
chr4	140640703	rs61747885	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,137:31:141:0.972:2	./.	./.	./.	0/1:33,48:32:81:0.593:2	0/1:32,32:31:64:0.500:2	./.
chr4	140651759	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,26:29:48:0.542:2	./.	./.	./.	./.
chr4	140810637	rs11100342	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:70,58:30:128:0.453:2	0/1:42,31:30:73:0.425:2	0/1:11,8:30:19:0.421:2	./.	0/1:2,170:30:172:0.988:2	./.	./.	0/1:94,72:31:166:0.434:2	./.	0/1:0,116:30:117:1.00:2	0/1:3,133:30:137:0.978:2
chr4	140810700	rs11729794	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:100,84:32:184:0.457:2	0/1:62,42:31:104:0.404:2	./.	./.	0/1:118,71:32:189:0.376:2	./.	./.	0/1:108,82:31:190:0.432:2	./.	0/1:2,170:31:172:0.988:2	0/1:100,78:31:179:0.438:2
chr4	140811084	rs12506879	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:53,24:31:77:0.312:2	0/1:38,16:32:54:0.296:2	./.	0/1:88,33:31:121:0.273:2	0/1:41,46:31:87:0.529:2	./.	./.	0/1:85,35:31:120:0.292:2	0/1:46,59:31:105:0.562:2	0/1:19,51:32:70:0.729:2	0/1:26,53:31:79:0.671:2
chr4	140811096	rs79090010	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:54,19:30:73:0.260:2	0/1:45,6:32:51:0.118:2	./.	0/1:99,25:31:124:0.202:2	0/1:40,54:29:94:0.574:2	./.	./.	0/1:88,23:31:111:0.207:2	0/1:47,62:31:109:0.569:2	0/1:41,30:31:71:0.423:2	0/1:46,36:30:82:0.439:2
chr4	140811111	rs62344937	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:60,12:31:72:0.167:2	0/1:43,7:32:50:0.140:2	./.	0/1:114,9:28:123:0.073:2	0/1:85,21:31:106:0.198:2	./.	./.	0/1:98,18:32:116:0.155:2	0/1:94,12:29:106:0.113:2	0/1:57,17:30:74:0.230:2	0/1:53,16:30:70:0.232:2
chr4	140811117	rs62344938	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:72,11:31:83:0.133:2	0/1:47,6:32:53:0.113:2	./.	0/1:116,5:30:121:0.041:2	0/1:103,15:31:118:0.127:2	./.	./.	0/1:108,12:32:120:0.100:2	./.	0/1:65,10:28:75:0.133:2	0/1:64,11:30:75:0.147:2
chr4	140811135	rs3733382	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:54,35:31:89:0.393:2	0/1:29,20:32:49:0.408:2	0/1:5,7:31:12:0.583:2	./.	0/1:3,136:32:139:0.978:2	./.	./.	0/1:76,58:32:135:0.433:2	./.	0/1:3,83:32:86:0.965:2	0/1:1,82:32:83:0.988:2
chr4	141264871	rs16998462	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,39:32:76:0.513:2	0/1:57,50:32:108:0.467:2	0/1:65,51:33:116:0.440:2	0/1:80,59:32:139:0.424:2	0/1:62,59:34:121:0.488:2	./.	./.
chr4	141294756	rs358304	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:35,23:31:58:0.397:2	0/1:23,19:30:42:0.452:2	./.	0/1:53,43:30:96:0.448:2	./.	./.	./.	./.	./.	./.	./.
chr4	141294814	rs2271430	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,17:31:39:0.436:2	0/1:9,9:34:18:0.500:2
chr4	141317021	rs186875887	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,56:32:172:0.326:2	./.	./.	./.	./.	./.	./.	./.
chr4	141320021	rs2175563	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:64,36:31:100:0.360:2	0/1:41,20:32:61:0.328:2	./.	0/1:58,42:31:100:0.420:2	./.	./.	./.	./.	./.	./.	./.
chr4	141320081	rs114046582	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,27:31:78:0.346:2	./.	./.	0/1:57,39:32:96:0.406:2	./.	./.	./.
chr4	141323162	rs2567241	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:23,28:32:51:0.549:2	0/1:20,16:32:36:0.444:2	./.	0/1:42,40:31:82:0.488:2	./.	./.	./.	./.	./.	./.	./.
chr4	141483449	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:32:52:0.078:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	141543997	rs1560440	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,22:31:22:1.00:2	0/1:0,21:31:21:1.00:2	./.	0/1:0,34:31:34:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,36:31:36:1.00:2
chr4	141548675	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,4:31:84:0.048:2	./.	./.	./.	./.	./.	./.
chr4	141578253	rs13118702	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,22:32:52:0.423:2
chr4	141583176	rs28465061	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,35:30:62:0.565:2	./.	./.	./.	./.
chr4	141590135	rs61742550	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,42:31:86:0.488:2	./.	./.	./.	./.	./.	./.	./.
chr4	141598126	rs2303911	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,24:32:49:0.490:2	./.	./.	0/1:38,20:32:58:0.345:2	./.
chr4	141600320	rs4956329	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,27:30:87:0.314:2	0/1:25,15:31:40:0.375:2	0/1:0,9:31:9:1.00:2	0/1:41,45:31:86:0.523:2	0/1:56,50:30:106:0.472:2	./.	0/1:3,125:31:128:0.977:2	./.	0/1:63,52:32:115:0.452:2	0/1:1,72:32:73:0.986:2	0/1:0,84:32:84:1.00:2
chr4	141789457	rs61744098	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,70:31:136:0.515:2	./.	./.	./.	./.	./.	./.	./.
chr4	141832497	rs368211428	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:110,4:31:114:0.035:2	./.	./.	./.	./.	./.	./.
chr4	142155039	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:33:170:0.024:2	./.	./.
chr4	142640637	rs2857261	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,20:33:20:1.00:2	0/1:0,9:33:9:1.00:2	./.	0/1:0,21:32:21:1.00:2	0/1:0,9:33:9:1.00:2	0/1:1,29:33:30:0.967:2	./.	0/1:12,8:31:20:0.400:2	0/1:9,22:34:31:0.710:2	./.	./.
chr4	143033778	rs3822141	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,101:33:101:1.00:2	0/1:0,55:33:55:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	143043340	rs2270658	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,45:30:107:0.421:2	./.	./.	./.	0/1:37,23:31:60:0.383:2	./.
chr4	143067054	rs35390852	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,147:32:149:0.993:2	0/1:4,81:32:86:0.953:2	./.	./.	./.	./.	./.	./.	0/1:2,193:32:195:0.990:2	0/1:105,63:32:168:0.375:2	./.
chr4	143235865	rs3756122	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,51:29:51:1.00:2	./.
chr4	143324094	rs1982966	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:29:6:0.500:2	./.	./.	0/1:40,20:28:60:0.333:2	0/1:34,19:29:53:0.358:2	./.	./.	./.	./.
chr4	144130750	rs7670426	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,5:30:7:0.714:2	0/1:23,20:30:43:0.465:2	./.	./.	./.	./.	./.	./.	./.
chr4	144135718	rs4285045	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:31:2:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,40:32:40:1.00:2	./.	0/1:46,30:32:76:0.395:2	0/1:0,42:32:42:1.00:2	0/1:0,64:32:65:1.00:2
chr4	144136025	rs34511898	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,40:32:87:0.460:2	./.	./.	./.	./.	./.
chr4	144359247	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,59:31:129:0.457:2
chr4	144361028	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:32:180:0.022:2	./.	./.	./.
chr4	144438595	rs35601522	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,12:31:32:0.375:2	0/1:6,9:28:15:0.600:2	./.	./.	0/1:30,7:31:37:0.189:2	./.
chr4	144442611	rs11100790	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:33:7:0.714:2	./.	0/1:23,22:30:45:0.489:2	./.	./.	0/1:20,19:31:39:0.487:2	./.	0/1:11,21:31:32:0.656:2	./.
chr4	144442735	rs11541117	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,21:31:36:0.583:2	0/1:30,25:31:55:0.455:2	0/1:22,14:33:36:0.389:2	0/1:31,30:31:61:0.492:2	./.	0/1:1,51:31:52:0.981:2	./.
chr4	144459835	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:33:102:0.039:2
chr4	144467104	rs13139128	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:31:92:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,109:30:109:1.00:2	0/1:0,61:29:61:1.00:2	0/1:0,101:30:101:1.00:2	0/1:0,96:30:96:1.00:2	0/1:1,121:30:122:0.992:2	0/1:0,154:31:154:1.00:2	0/1:0,93:31:93:1.00:2	0/1:0,127:30:127:1.00:2
chr4	144801662	rs1132785	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,173:32:174:1.00:2	0/1:2,111:31:113:0.982:2	./.	./.	./.	./.	./.	./.
chr4	144917413	rs377010961	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr4	144918704	rs200485377	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:183,6:30:189:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr4	144918705	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:176,7:31:183:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr4	144918712	rs1132783	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,20:33:30:0.667:2	./.	./.	0/1:81,62:32:143:0.434:2	./.	./.	./.	0/1:85,73:32:158:0.462:2	./.
chr4	144918713	rs184961047	T	C,A	.	PASS	AC=2,1;AF=0.222,0.111;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0/2:31:198:0.031:2	./.	./.	0/1:29:145:0.034:2	./.	./.	./.	0/1:27:195:0.036:2
chr4	144918743	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,5:32:169:0.030:2
chr4	144920596	rs7683365	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,79:31:145:0.545:2	0/1:52,70:30:125:0.574:2	0/1:61,70:31:131:0.534:2	0/1:80,52:31:132:0.394:2	0/1:58,59:32:117:0.504:2	0/1:72,81:32:153:0.529:2
chr4	144922436	rs201662569	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:68,9:34:77:0.117:2	0/1:139,53:32:192:0.276:2	0/1:119,50:32:169:0.296:2	0/1:149,36:33:185:0.195:2	0/1:147,33:33:180:0.183:2	0/1:153,32:33:185:0.173:2	0/1:137,34:33:171:0.199:2	0/1:137,41:32:178:0.230:2	./.
chr4	145038026	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,5:32:164:0.030:2	./.	./.	./.	./.	./.
chr4	145038027	rs146754148	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,5:30:164:0.030:2	./.	./.	./.	./.	./.
chr4	145038057	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,5:29:164:0.030:2	./.	./.	./.	./.	./.
chr4	145041686	rs4867	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:32:36:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,164:32:164:1.00:2	0/1:1,112:31:113:0.991:2	0/1:0,79:31:79:1.00:2	0/1:0,61:32:61:1.00:2	0/1:3,94:32:97:0.969:2	0/1:0,107:33:107:1.00:2	0/1:1,75:32:77:0.987:2	0/1:0,45:32:45:1.00:2
chr4	145041707	rs7658293	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,11:30:14:0.786:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,6:28:10:0.600:2
chr4	145041708	rs7687256	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,11:33:14:0.786:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,6:31:10:0.600:2
chr4	145041720	rs7682260	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:33:6:0.500:2	0/1:0,5:34:5:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:31:105:0.038:2	0/1:5,14:35:19:0.737:2
chr4	145041741	rs4449373	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:33:18:1.00:2	0/1:1,9:32:10:0.900:2	0/1:1,7:33:8:0.875:2	0/1:1,170:33:171:0.994:2	0/1:6,160:33:166:0.964:2	0/1:3,99:33:102:0.971:2	0/1:9,79:34:88:0.898:2	0/1:7,95:34:102:0.931:2	0/1:7,126:34:133:0.947:2	0/1:4,92:34:96:0.958:2	0/1:7,29:32:36:0.806:2
chr4	145580090	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:27:29:0.138:2	./.
chr4	146002844	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,3:33:19:0.158:2	./.	./.	./.	0/1:163,6:32:169:0.036:2	0/1:193,5:32:198:0.025:2	0/1:185,8:33:194:0.041:2	./.	./.
chr4	146031551	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,5:33:189:0.026:2	./.	./.	./.	0/1:186,5:32:191:0.026:2	./.	./.	./.
chr4	146031578	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,6:32:189:0.032:2	0/1:174,6:33:180:0.033:2	./.	0/1:175,6:32:181:0.033:2
chr4	146033407	rs80263613	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,4:31:82:0.049:2	0/1:98,4:34:102:0.039:2	./.	./.	./.	./.	./.
chr4	146033413	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,5:27:86:0.058:2	./.	./.	./.	./.	./.	./.
chr4	146033443	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.	./.	./.	./.	./.	./.
chr4	146041162	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:33:135:0.030:2	./.	./.
chr4	146041238	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,5:30:74:0.068:2	./.	./.	./.
chr4	146041283	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:33:69:0.058:2	./.	./.	./.
chr4	146041295	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:32:62:0.065:2	./.	./.	./.
chr4	146044464	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:32:103:0.039:2	./.
chr4	146046178	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,6:32:160:0.038:2
chr4	146059146	rs191435305	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,59:29:145:0.407:2	./.	./.	./.	./.
chr4	146062566	.	T	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:162,5:32:167:0.030:2	./.	0/1:193,4:33:198:0.020:2	./.	./.	0/1:154,4:31:158:0.025:2	0/1:188,6:33:194:0.031:2
chr4	146071752	rs199880420	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:32:157:0.025:2	./.	./.	./.	./.
chr4	146071755	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:31:158:0.025:2	./.	./.	./.	./.
chr4	146076733	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,5:30:168:0.030:2	./.	./.	./.
chr4	146077132	rs36225838	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,61:30:136:0.449:2	./.	./.	./.
chr4	146083825	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,5:29:199:0.025:2	./.	./.	./.
chr4	146572227	rs11721553	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,11:33:21:0.524:2	./.	./.	0/1:117,69:32:186:0.371:2	./.	./.	./.	./.	./.
chr4	146653620	rs10008599	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:32:15:0.400:2	./.	./.	./.	./.	./.	./.	./.	0/1:46,47:31:93:0.505:2
chr4	146767168	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:32:168:0.024:2	./.	./.	./.	./.
chr4	146770480	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:33:29:0.138:2	./.	./.
chr4	147110766	rs184688180	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,26:32:53:0.491:2	./.	./.	./.	./.
chr4	147110790	rs41280529	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,23:32:40:0.575:2	0/1:20,21:33:41:0.512:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	147110827	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:30:45:0.089:2	./.
chr4	147179909	rs138035413	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,41:31:96:0.427:2
chr4	147214086	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:31:29:0.138:2	./.	./.	./.
chr4	147560411	rs13152799	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	./.	./.	./.
chr4	147560557	rs148020860	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:30:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	147561654	rs3827594	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,20:29:40:0.500:2	./.	./.	./.	./.	./.
chr4	147561891	rs138240408	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,29:32:55:0.527:2	./.	./.	./.	./.	./.
chr4	147788709	rs10013280	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,74:31:139:0.536:2	0/1:54,44:32:98:0.449:2	./.	./.	./.	0/1:98,83:30:181:0.459:2	0/1:182,5:28:187:0.027:2	./.	0/1:104,73:32:177:0.412:2	0/1:72,88:31:160:0.550:2	0/1:86,93:31:179:0.520:2
chr4	147788728	rs35231662	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,49:31:138:0.355:2	./.	./.	./.	./.
chr4	147824864	rs17610219	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,27:32:59:0.458:2	0/1:22,15:31:37:0.405:2	./.	./.	./.	0/1:27,21:30:48:0.438:2	0/1:14,15:31:29:0.517:2	./.	0/1:43,23:31:66:0.348:2	0/1:26,15:32:41:0.366:2	0/1:70,31:31:101:0.307:2
chr4	148461037	rs5333	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,66:33:138:0.478:2	./.	0/1:78,73:33:151:0.483:2	./.	./.	./.
chr4	148461073	rs5334	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,46:31:89:0.517:2	./.	0/1:42,46:30:88:0.523:2	./.	./.	./.
chr4	148560210	rs34852471	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,21:31:72:0.292:2	./.	./.	./.
chr4	148744044	rs185914335	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,62:31:138:0.449:2	0/1:63,37:30:100:0.370:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	148984305	rs144731909	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:29:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	148984321	rs2276932	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,37:32:101:0.366:2	./.	./.	./.
chr4	149075808	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:198:0.020:2	./.	./.
chr4	149356516	rs5525	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:30:68:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,13:29:13:1.00:2	0/1:0,72:30:72:1.00:2	0/1:0,63:30:64:1.00:2	0/1:0,86:29:86:1.00:2	0/1:1,70:30:71:0.986:2	0/1:89,6:30:95:0.063:2	0/1:0,82:31:82:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,92:30:92:1.00:2
chr4	149357475	rs5522	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:31:27:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,39:31:39:1.00:2	./.	0/1:0,38:31:38:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,43:31:43:1.00:2
chr4	149357724	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,6:28:196:0.031:2
chr4	151177340	rs13152819	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,4:29:4:1.00:2	0/1:0,2:32:2:1.00:2	./.	0/1:0,2:32:2:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,4:32:4:1.00:2	./.	./.
chr4	151177341	rs13152820	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,4:30:4:1.00:2	0/1:0,2:29:2:1.00:2	./.	0/1:0,2:31:2:1.00:2	0/1:0,4:29:4:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,4:32:4:1.00:2	./.	./.
chr4	151199080	rs2290846	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:13,10:29:23:0.435:2	0/1:13,9:32:22:0.409:2	./.	0/1:0,43:29:43:1.00:2	./.	./.	./.	./.	./.	0/1:22,6:31:28:0.214:2	./.
chr4	151207127	rs3749574	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:86,39:31:125:0.312:2	0/1:35,28:31:63:0.444:2	0/1:3,4:29:7:0.571:2	0/1:1,142:30:143:0.993:2	./.	./.	./.	./.	./.	0/1:73,81:31:154:0.526:2	./.
chr4	151236754	.	T	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,6:26:43:0.140:2	0/1:47,7:28:54:0.130:2	0/1:29,4:27:33:0.121:2	0/1:56,7:19:63:0.111:2
chr4	151505322	rs13105060	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:33:62:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,58:32:58:1.00:2	0/1:1,65:32:66:0.985:2	0/1:1,98:33:99:0.990:2	0/1:1,50:33:51:0.980:2	0/1:0,96:33:96:1.00:2
chr4	151505748	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,4:32:52:0.077:2	./.	./.	./.	./.	./.	./.	./.
chr4	151719263	rs1129998	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,16:30:30:0.533:2	0/1:82,90:30:172:0.523:2	./.	0/1:92,77:29:169:0.456:2	./.	./.	0/1:84,88:31:172:0.512:2	0/1:1,174:30:175:0.994:2	./.
chr4	151765336	rs11735845	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,42:29:81:0.519:2	./.	./.	./.	./.	./.	./.	./.
chr4	151770610	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,26:8:133:0.195:2	0/1:122,27:8:149:0.181:2
chr4	151773593	rs1782360	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,16:32:37:0.432:2	0/1:11,9:30:20:0.450:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	151829824	rs1201208	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,34:30:91:0.374:2	0/1:24,8:32:32:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	151835364	rs62344598	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,53:34:121:0.438:2	0/1:44,22:33:66:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	152065197	rs3736502	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,40:31:100:0.400:2	./.	./.	./.	./.	./.	./.	./.
chr4	152070633	rs3792611	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,28:32:70:0.400:2	0/1:26,6:31:32:0.188:2	0/1:0,8:32:8:1.00:2	0/1:42,36:32:78:0.462:2	0/1:0,32:32:32:1.00:2	0/1:1,52:31:53:0.981:2	0/1:0,17:33:17:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,31:32:31:1.00:2	0/1:1,89:32:90:0.989:2
chr4	152096301	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,22:32:72:0.306:2	./.	./.
chr4	152201053	rs36097019	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,47:31:90:0.522:2	0/1:21,22:31:43:0.512:2	0/1:6,4:29:10:0.400:2	0/1:58,44:31:102:0.431:2	./.	0/1:77,46:30:123:0.374:2	0/1:68,52:31:120:0.433:2	./.	0/1:65,38:31:103:0.369:2	./.	./.
chr4	152203451	rs200120511	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,88:32:188:0.468:2	./.	./.	./.
chr4	152212486	rs13126069	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:110,71:32:181:0.392:2	0/1:47,43:32:90:0.478:2	0/1:19,26:32:45:0.578:2	0/1:90,98:32:188:0.521:2	./.	0/1:106,81:32:187:0.433:2	0/1:119,71:32:190:0.374:2	./.	0/1:110,75:33:185:0.405:2	./.	./.
chr4	152212603	rs2407221	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:32:56:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,60:31:60:1.00:2	0/1:1,42:33:43:0.977:2	0/1:0,43:32:43:1.00:2	0/1:0,41:32:41:1.00:2
chr4	152498625	rs17275536	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,43:31:92:0.467:2	0/1:4,112:31:116:0.966:2	0/1:55,51:32:106:0.481:2	0/1:91,69:32:160:0.431:2	0/1:72,43:31:116:0.374:2	./.	./.
chr4	152577397	rs61744219	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,83:31:169:0.491:2	./.	./.	./.	./.	./.
chr4	152609826	rs62327344	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,68:29:116:0.586:2	./.	./.	./.
chr4	152682046	rs11556167	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,50:30:89:0.562:2	0/1:23,24:30:47:0.511:2	0/1:1,89:30:90:0.989:2
chr4	153549745	rs138358407	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,8:33:8:1.00:2	./.	./.	0/1:0,6:32:6:1.00:2	./.	0/1:0,5:30:5:1.00:2	./.	./.	0/1:0,5:31:5:1.00:2	0/1:0,11:32:11:1.00:2	./.
chr4	153549752	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,5:21:8:0.625:2	./.	./.	./.
chr4	153690842	rs4696354	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,127:29:128:0.992:2	0/1:2,47:29:49:0.959:2	0/1:16,7:30:23:0.304:2	0/1:1,143:29:144:0.993:2	0/1:0,117:29:117:1.00:2	0/1:67,87:29:154:0.565:2	0/1:71,83:29:154:0.539:2	./.	0/1:100,71:29:171:0.415:2	0/1:1,125:29:126:0.992:2	0/1:0,135:30:135:1.00:2
chr4	153874666	rs61753649	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,13:32:50:0.260:2	0/1:16,18:30:34:0.529:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	153896049	.	A	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:29:14:0.286:2	./.	./.	./.	./.	0/1:16,7:15:23:0.304:2	0/1:8,4:22:12:0.333:2	./.	0/1:13,6:16:19:0.316:2	./.	./.
chr4	153896053	rs61753618	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,6:26:22:0.353:2	./.	./.	./.	./.	./.
chr4	153896358	rs3811833	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:31:31:1.00:2	0/1:1,14:30:15:0.933:2	0/1:8,3:31:11:0.273:2	0/1:25,25:31:50:0.500:2	0/1:0,50:29:50:1.00:2	0/1:22,23:31:45:0.511:2	0/1:0,57:31:57:1.00:2	0/1:0,40:30:40:1.00:2	./.	0/1:18,9:31:27:0.333:2	0/1:0,25:31:25:1.00:2
chr4	153897770	rs3811832	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,43:33:43:1.00:2	0/1:0,31:32:31:1.00:2	./.	0/1:20,20:32:40:0.500:2	0/1:0,43:31:43:1.00:2	0/1:22,19:33:41:0.463:2	0/1:1,40:32:41:0.976:2	0/1:1,55:32:56:0.982:2	./.	0/1:19,41:33:60:0.683:2	0/1:0,39:32:39:1.00:2
chr4	154191552	.	C	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:95,14:16:110:0.128:2	./.	./.	0/1:133,24:14:157:0.153:2	0/1:137,20:13:157:0.127:2	0/1:112,19:15:131:0.145:2	0/1:141,21:12:162:0.130:2	./.	0/1:132,18:13:150:0.120:2	0/1:101,14:14:116:0.122:2	0/1:123,20:15:145:0.140:2
chr4	154197234	rs2289409	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,5:31:12:0.417:2	0/1:54,37:30:91:0.407:2	./.	./.	./.	./.	./.	./.	./.
chr4	154216710	rs893805	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:31:4:1.00:2	0/1:43,52:30:95:0.547:2	./.	./.	0/1:53,59:32:112:0.527:2	./.	0/1:30,37:31:67:0.552:2	./.	./.
chr4	154271198	rs182397375	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,41:33:77:0.532:2	./.	./.
chr4	154276856	rs10471075	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,4:33:17:0.235:2	./.	./.	./.	./.	0/1:39,33:32:72:0.458:2	./.	./.	0/1:49,43:33:92:0.467:2
chr4	154387597	rs71620317	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,6:29:6:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2
chr4	154478222	rs10001845	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:68,43:32:111:0.387:2	0/1:54,34:32:88:0.386:2	0/1:7,8:31:15:0.533:2	./.	./.	./.	./.	0/1:1,72:31:73:0.986:2	./.	0/1:51,42:31:93:0.452:2	0/1:109,70:32:179:0.391:2
chr4	154479430	rs6848033	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,42:33:81:0.519:2	0/1:32,17:32:49:0.347:2	0/1:7,12:31:19:0.632:2	0/1:44,48:33:92:0.522:2	./.	0/1:48,52:33:100:0.520:2	./.	0/1:1,101:33:102:0.990:2	0/1:46,41:34:88:0.471:2	0/1:46,44:33:90:0.489:2	0/1:61,64:33:126:0.512:2
chr4	154506081	rs11931730	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,24:32:57:0.421:2	./.	./.	./.	./.
chr4	154513627	rs7669418	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:31:9:1.00:2	0/1:41,49:32:90:0.544:2	./.	./.	0/1:50,37:32:87:0.425:2	0/1:0,112:31:113:1.00:2	0/1:58,41:33:99:0.414:2	0/1:51,32:32:83:0.386:2	./.
chr4	154513722	rs7669741	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:31:3:1.00:2	0/1:24,28:32:52:0.538:2	./.	./.	0/1:29,17:32:46:0.370:2	0/1:0,53:31:53:1.00:2	0/1:33,30:32:63:0.476:2	0/1:30,23:32:53:0.434:2	./.
chr4	154514965	rs17370297	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:30:7:1.00:2	0/1:23,24:28:47:0.511:2	./.	./.	0/1:20,16:31:36:0.444:2	0/1:0,61:29:61:1.00:2	0/1:51,13:30:64:0.203:2	0/1:32,37:29:69:0.536:2	./.
chr4	154525138	rs36023829	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,70:29:191:0.370:2	./.	./.	0/1:79,73:29:153:0.480:2
chr4	154525458	rs1063151	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,19:33:49:0.388:2	0/1:14,6:32:20:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,44:32:84:0.524:2
chr4	154553877	rs35627765	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,71:31:151:0.470:2
chr4	154553973	rs35897141	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:80,93:32:173:0.538:2	0/1:44,60:32:104:0.577:2	0/1:18,28:33:46:0.609:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	154557467	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:32:70:0.057:2	./.	./.	./.	./.	./.
chr4	154624656	rs3804099	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,46:30:49:0.939:2	0/1:0,28:29:28:1.00:2	./.	0/1:38,23:29:61:0.377:2	0/1:18,24:29:42:0.571:2	0/1:35,33:29:68:0.485:2	0/1:1,41:29:42:0.976:2	./.	0/1:40,35:31:75:0.467:2	./.	0/1:1,75:30:76:0.987:2
chr4	154625409	rs3804100	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,7:30:13:0.538:2	0/1:66,45:30:111:0.405:2	./.	./.	./.	./.	./.	./.	./.
chr4	154625951	rs5743704	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,33:32:52:0.635:2	./.	./.	./.	./.	./.	./.	./.
chr4	154631543	rs2405432	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,56:30:57:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,58:32:58:1.00:2
chr4	154631563	rs1339	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:45,3:34:48:0.063:2	0/1:13,3:34:16:0.188:2	0/1:42,36:33:78:0.462:2	0/1:34,21:32:55:0.382:2	./.	./.	./.	./.	0/1:25,36:33:61:0.590:2	./.
chr4	154631587	rs1337	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,42:30:91:0.462:2
chr4	154644537	rs10517577	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,37:30:78:0.474:2	./.	./.	./.	./.	./.	./.	0/1:45,33:29:78:0.423:2
chr4	154644542	rs115872046	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,9:31:12:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	154669886	rs34803482	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,78:33:183:0.426:2	./.	./.	./.	0/1:53,40:33:93:0.430:2
chr4	154669887	rs147318567	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,62:32:116:0.534:2	0/1:36,26:31:62:0.419:2	./.	./.	./.	0/1:105,80:31:185:0.432:2	./.	0/1:101,88:32:189:0.466:2	./.	./.	./.
chr4	154709854	rs4643790	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:36,23:30:59:0.390:2	0/1:22,16:30:38:0.421:2	./.	./.	0/1:43,72:30:115:0.626:2	0/1:69,33:30:102:0.324:2	0/1:1,113:31:114:0.991:2	0/1:49,71:31:120:0.592:2	./.	./.	0/1:29,32:30:61:0.525:2
chr4	154709856	rs6535952	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:28:56:1.00:2	0/1:0,38:26:38:1.00:2	0/1:0,15:28:15:1.00:2	0/1:1,83:29:84:0.988:2	0/1:0,115:28:115:1.00:2	0/1:0,97:29:97:1.00:2	0/1:0,114:29:114:1.00:2	0/1:0,116:28:116:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,60:28:60:1.00:2	0/1:0,60:28:60:1.00:2
chr4	154709910	rs4076441	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,13:29:23:0.565:2	./.
chr4	154709922	rs4075422	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,11:31:20:0.550:2	./.
chr4	155156207	rs7655799	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:32:88:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,90:31:90:1.00:2	0/1:1,73:31:74:0.986:2	0/1:0,100:30:100:1.00:2	0/1:0,80:31:80:1.00:2	0/1:37,60:32:97:0.619:2	0/1:0,95:33:95:1.00:2	0/1:1,78:31:79:0.987:2	0/1:0,117:32:117:1.00:2
chr4	155156542	rs61741046	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,53:29:125:0.424:2	./.	./.	./.
chr4	155157015	rs61743677	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,27:33:37:0.730:2	./.	./.	./.
chr4	155219318	rs28561984	C	G,T	.	PASS	AC=1,3;AF=0.083,0.250;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	./.	0/2:32:114:0.425:2	0/2:32:67:0.507:2	0/2:31:8:0.625:2	./.	./.	./.	./.	0/1:33:118:0.458:2	./.	./.	./.
chr4	155219361	rs17031387	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:79,67:32:146:0.459:2	0/1:42,39:32:81:0.481:2	0/1:5,8:32:13:0.615:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	155219373	rs17031391	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,85:33:191:0.445:2	./.	./.	./.
chr4	155219382	rs116029479	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,74:32:171:0.433:2	./.
chr4	155219549	rs74321456	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,50:33:99:0.505:2	./.
chr4	155219662	rs17031394	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:42,52:33:94:0.553:2	0/1:25,23:33:48:0.479:2	0/1:6,4:33:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	155226252	rs150179829	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,9:31:17:0.529:2	./.	./.	./.	./.	./.	./.
chr4	155241572	rs11935573	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:106,92:31:198:0.465:2	0/1:62,69:31:131:0.527:2	0/1:14,15:31:30:0.517:2	0/1:122,78:30:200:0.390:2	0/1:106,91:30:197:0.462:2	0/1:126,72:30:198:0.364:2	0/1:105,92:30:197:0.467:2	./.	./.	./.	0/1:114,81:31:195:0.415:2
chr4	155241735	rs79535970	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,71:31:147:0.483:2	./.
chr4	155243573	rs13109747	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,113:33:113:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,139:32:139:1.00:2	0/1:2,98:32:100:0.980:2	0/1:0,131:31:131:1.00:2	0/1:4,113:32:117:0.966:2	0/1:84,88:32:172:0.512:2	0/1:0,156:33:156:1.00:2	0/1:77,47:32:124:0.379:2	0/1:1,150:32:151:0.993:2
chr4	155243604	rs1352714	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,111:33:111:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,122:33:122:1.00:2	0/1:2,79:32:81:0.975:2	0/1:0,113:32:113:1.00:2	0/1:4,108:33:112:0.964:2	0/1:79,68:33:147:0.463:2	0/1:0,142:34:142:1.00:2	0/1:0,108:32:108:1.00:2	0/1:1,143:33:144:0.993:2
chr4	155244462	rs74430037	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,17:33:28:0.607:2	./.
chr4	155244475	rs12500437	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,15:29:15:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,22:29:22:1.00:2	0/1:1,19:31:20:0.950:2	0/1:18,9:30:27:0.333:2	0/1:0,29:32:29:1.00:2	0/1:13,8:29:21:0.381:2	0/1:0,34:31:34:1.00:2
chr4	155250786	rs34249493	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,75:29:158:0.475:2	./.	./.	./.	./.	./.	0/1:55,55:30:110:0.500:2
chr4	155256177	rs6858157	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,22:29:48:0.458:2	0/1:15,17:30:32:0.531:2	0/1:4,7:30:11:0.636:2	0/1:29,26:30:55:0.473:2	0/1:30,20:29:50:0.400:2	0/1:33,34:30:67:0.507:2	0/1:16,24:29:40:0.600:2	0/1:49,31:29:80:0.388:2	./.	./.	0/1:37,26:30:63:0.413:2
chr4	155256205	rs6858712	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:32:50:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,55:31:56:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,89:33:89:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,74:32:74:1.00:2
chr4	155264637	rs62331892	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,14:32:39:0.359:2	./.	./.	./.	./.	./.	./.	./.
chr4	155287535	rs10017772	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:55,59:28:115:0.518:2	0/1:36,28:28:64:0.438:2	./.	0/1:83,81:29:164:0.494:2	./.	0/1:73,73:29:146:0.500:2	0/1:116,60:29:176:0.341:2	0/1:69,66:29:135:0.489:2	0/1:3,155:29:158:0.981:2	0/1:84,62:29:146:0.425:2	0/1:70,71:29:141:0.504:2
chr4	155295076	rs11721758	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:13,16:31:30:0.552:2	0/1:8,14:30:22:0.636:2	./.	0/1:36,25:30:61:0.410:2	./.	0/1:30,29:30:59:0.492:2	0/1:2,47:30:49:0.959:2	0/1:52,38:30:90:0.422:2	0/1:0,59:32:59:1.00:2	0/1:31,37:31:70:0.544:2	0/1:55,36:30:91:0.396:2
chr4	155312411	rs62331900	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,3:31:13:0.231:2	./.	./.	0/1:42,51:32:93:0.548:2	./.	0/1:0,100:31:100:1.00:2	./.	./.	./.
chr4	155407595	rs140554741	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,50:31:120:0.417:2	./.	./.
chr4	155407680	rs13151559	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:0,20:31:20:1.00:2	0/1:3,4:31:7:0.571:2	0/1:20,16:32:36:0.444:2	0/1:11,18:31:29:0.621:2	0/1:13,23:32:36:0.639:2	0/1:20,16:31:36:0.444:2	0/1:1,42:32:43:0.977:2	0/1:0,34:33:34:1.00:2	0/1:22,17:32:39:0.436:2	0/1:0,75:32:75:1.00:2
chr4	155410650	rs72731014	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,17:31:44:0.386:2	0/1:13,15:32:28:0.536:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,44:31:44:1.00:2
chr4	155410667	rs55810732	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,14:30:39:0.359:2	0/1:12,14:29:26:0.538:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,35:30:35:1.00:2
chr4	155410731	rs72731016	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,12:31:32:0.375:2	0/1:8,9:33:18:0.529:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,23:32:23:1.00:2
chr4	155410822	rs4696593	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,25:32:54:0.463:2	0/1:21,19:31:40:0.475:2	0/1:4,11:31:15:0.733:2	0/1:35,41:31:76:0.539:2	0/1:51,52:31:103:0.505:2	0/1:48,37:30:85:0.435:2	0/1:36,52:30:88:0.591:2	0/1:0,122:30:122:1.00:2	0/1:0,79:32:79:1.00:2	0/1:17,29:32:46:0.630:2	./.
chr4	155410909	rs35172627	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,5:31:13:0.385:2	0/1:56,60:29:117:0.517:2	0/1:77,82:30:159:0.516:2	0/1:55,64:30:119:0.538:2	0/1:85,53:29:138:0.384:2	./.	./.	0/1:57,36:29:93:0.387:2	./.
chr4	155411065	rs7656522	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,12:33:12:1.00:2	0/1:0,13:31:13:1.00:2	./.	0/1:13,12:31:25:0.480:2	0/1:13,7:32:20:0.350:2	0/1:16,14:30:30:0.467:2	0/1:12,9:32:21:0.429:2	0/1:0,18:31:18:1.00:2	0/1:0,28:32:28:1.00:2	0/1:10,14:32:24:0.583:2	0/1:0,19:30:19:1.00:2
chr4	155411104	rs6536016	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,14:30:14:1.00:2	0/1:0,13:29:13:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,26:28:26:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,21:29:21:1.00:2
chr4	155411649	rs13130030	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.
chr4	155411883	rs17373860	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,27:31:70:0.386:2	0/1:18,29:30:47:0.617:2	./.
chr4	155411939	rs17373874	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,44:32:89:0.500:2	0/1:23,33:31:56:0.589:2	0/1:8,10:32:18:0.556:2	0/1:77,69:32:146:0.473:2	0/1:76,48:31:124:0.387:2	0/1:57,44:31:101:0.436:2	0/1:26,14:31:40:0.350:2	./.	./.	0/1:50,25:31:75:0.333:2	0/1:0,38:31:38:1.00:2
chr4	155412464	rs13149269	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,13:32:26:0.500:2	0/1:10,11:32:21:0.524:2	0/1:2,5:30:7:0.714:2	0/1:10,13:31:23:0.565:2	0/1:16,18:32:34:0.529:2	0/1:19,15:29:34:0.441:2	0/1:13,26:33:39:0.667:2	./.	./.	0/1:22,11:32:33:0.333:2	0/1:0,38:32:38:1.00:2
chr4	155459194	rs7668818	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,35:30:81:0.438:2	0/1:37,31:31:68:0.456:2	./.	0/1:36,39:31:75:0.520:2	./.	0/1:33,43:31:76:0.566:2	./.
chr4	155461113	rs7671792	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,43:32:93:0.462:2	0/1:54,28:33:82:0.341:2	./.	0/1:67,38:32:105:0.362:2	./.	0/1:39,40:33:79:0.506:2	./.
chr4	155461816	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:30:93:0.043:2	./.	./.	./.
chr4	155463419	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:33:159:0.025:2	./.	./.	./.	./.	./.
chr4	155486377	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,4:32:75:0.053:2	./.	./.	./.	./.	./.	./.	./.
chr4	155486381	rs2227401	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,29:30:44:0.659:2	./.	./.	./.	0/1:45,24:31:69:0.348:2
chr4	155488821	rs6056	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,43:31:108:0.398:2	./.	./.	./.	0/1:104,81:31:185:0.438:2
chr4	155490832	rs4681	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,42:30:107:0.396:2	./.	./.	./.	0/1:50,34:30:84:0.405:2
chr4	155491759	rs4220	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,74:33:195:0.379:2	./.	./.	./.	0/1:112,70:33:182:0.385:2
chr4	155507590	rs6050	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:15,11:34:26:0.423:2	0/1:9,9:33:18:0.500:2	./.	0/1:17,13:33:30:0.433:2	./.	./.	./.	0/1:13,14:33:27:0.519:2	0/1:15,13:33:28:0.464:2	./.	./.
chr4	155528084	rs121913088	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,78:32:166:0.470:2	./.	./.	./.	./.
chr4	155531268	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:32:182:0.022:2	./.	./.	./.
chr4	155533035	rs148685782	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,22:32:41:0.537:2	./.	./.	./.	./.	./.
chr4	155719189	rs79167802	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,23:33:44:0.523:2
chr4	155720274	rs156502	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,24:30:60:0.400:2	./.	0/1:34,29:30:63:0.460:2	./.	0/1:0,72:31:72:1.00:2	0/1:19,25:29:44:0.568:2	0/1:43,32:29:75:0.427:2
chr4	156135676	rs1047214	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:31,46:32:77:0.597:2	0/1:21,14:32:35:0.400:2	./.	0/1:44,28:31:72:0.389:2	./.	./.	0/1:55,37:32:92:0.402:2	0/1:44,34:32:78:0.436:2	0/1:59,42:33:101:0.416:2	0/1:26,21:31:47:0.447:2	0/1:57,33:31:90:0.367:2
chr4	156136027	rs2880415	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:42,56:31:98:0.571:2	0/1:31,27:31:58:0.466:2	./.	0/1:74,42:30:116:0.362:2	./.	./.	0/1:73,59:30:132:0.447:2	0/1:72,58:30:130:0.446:2	0/1:49,70:31:119:0.588:2	0/1:58,47:31:105:0.448:2	0/1:49,58:30:107:0.542:2
chr4	156137701	rs192041437	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,5:32:14:0.357:2	./.	./.	./.	./.	./.	./.
chr4	156137926	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:33:122:0.033:2	./.
chr4	156138091	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,16:30:39:0.410:2	./.
chr4	156273768	rs2305050	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:38,52:33:90:0.578:2	0/1:28,21:33:49:0.429:2	./.	./.	./.	./.	0/1:39,22:32:62:0.361:2	0/1:31,39:33:70:0.557:2	0/1:58,51:33:109:0.468:2	0/1:37,64:33:101:0.634:2	0/1:71,61:33:132:0.462:2
chr4	156274377	rs1058992	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,63:32:151:0.417:2	0/1:64,56:31:120:0.467:2	./.
chr4	156276289	rs2341894	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:53,25:30:78:0.321:2	0/1:28,18:30:46:0.391:2	./.	./.	./.	./.	0/1:46,33:29:79:0.418:2	0/1:78,40:29:118:0.339:2	0/1:76,58:31:134:0.433:2	0/1:59,36:31:95:0.379:2	0/1:91,60:31:151:0.397:2
chr4	156276317	rs2880181	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:35,14:33:49:0.286:2	0/1:12,8:32:20:0.400:2	./.	./.	./.	./.	0/1:24,17:32:41:0.415:2	0/1:39,13:31:52:0.250:2	0/1:45,31:33:76:0.408:2	0/1:37,21:33:58:0.362:2	0/1:51,32:33:83:0.386:2
chr4	156289900	rs3733390	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:92,68:31:160:0.425:2	0/1:86,73:31:159:0.459:2	./.	./.	./.	./.	0/1:98,51:31:149:0.342:2	0/1:114,62:30:176:0.352:2	./.	./.	0/1:85,99:31:184:0.538:2
chr4	156289917	rs3733391	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:93,65:32:158:0.411:2	0/1:76,67:32:143:0.469:2	./.	./.	./.	./.	0/1:75,45:32:120:0.375:2	0/1:114,61:31:175:0.349:2	./.	./.	0/1:92,96:32:188:0.511:2
chr4	156631842	rs16998966	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	156632391	rs11944673	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:32:38:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,40:33:40:1.00:2
chr4	156634541	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:191,6:28:197:0.030:2	./.	./.	./.	./.	./.	./.
chr4	156680340	rs1459845	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:7,14:32:21:0.667:2	0/1:0,5:31:5:1.00:2	0/1:6,4:28:10:0.400:2	0/1:6,4:31:10:0.400:2	0/1:5,10:30:15:0.667:2	0/1:12,17:31:29:0.586:2	0/1:4,11:32:16:0.733:2	./.	0/1:5,12:30:17:0.706:2	./.	0/1:3,8:32:11:0.727:2
chr4	156696206	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	156721098	rs17854507	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:37,37:31:74:0.500:2	0/1:30,32:31:62:0.516:2	./.	./.	./.	./.	./.	./.	./.	0/1:48,62:31:110:0.564:2	./.
chr4	156721198	rs2229202	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,36:31:37:1.00:2	./.	./.	0/1:24,20:31:44:0.455:2	0/1:32,19:32:51:0.373:2	./.	./.	0/1:23,22:29:45:0.489:2
chr4	156723628	rs188196277	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,81:30:174:0.466:2	./.	./.	./.
chr4	156787340	rs6848883	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,34:32:67:0.507:2	0/1:23,13:32:36:0.361:2	0/1:9,6:32:15:0.400:2	0/1:0,42:32:42:1.00:2	0/1:0,36:32:36:1.00:2	0/1:35,28:32:63:0.444:2	0/1:0,39:32:39:1.00:2	0/1:0,47:32:47:1.00:2	0/1:44,49:33:93:0.527:2	0/1:0,52:32:52:1.00:2	0/1:2,80:32:82:0.976:2
chr4	156838535	rs77984239	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,17:33:45:0.378:2	0/1:11,14:33:25:0.560:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	156847230	rs1543108	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,31:33:80:0.388:2	0/1:26,18:32:44:0.409:2	0/1:6,3:32:9:0.333:2	0/1:1,78:32:79:0.987:2	0/1:1,42:32:43:0.977:2	0/1:35,26:32:61:0.426:2	0/1:1,37:33:38:0.974:2	0/1:1,62:32:63:0.984:2	0/1:53,65:34:119:0.551:2	0/1:0,51:32:51:1.00:2	0/1:1,86:33:87:0.989:2
chr4	156850703	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:31:147:0.027:2	./.	./.	./.	./.	./.
chr4	157684248	rs3815861	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,30:33:52:0.577:2	0/1:8,17:32:25:0.680:2	0/1:8,4:35:12:0.333:2	0/1:42,31:32:73:0.425:2	./.	./.	./.	./.	0/1:32,34:33:66:0.515:2	0/1:19,19:33:38:0.500:2	./.
chr4	158043559	rs41280501	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,55:31:59:0.932:2	0/1:1,38:31:39:0.974:2	0/1:13,5:31:18:0.278:2	0/1:38,32:31:70:0.457:2	./.	0/1:54,52:30:106:0.491:2	0/1:31,11:29:42:0.262:2	0/1:56,30:29:86:0.349:2	0/1:43,40:31:83:0.482:2	0/1:0,62:31:62:1.00:2	0/1:54,55:32:109:0.505:2
chr4	158057955	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,6:32:93:0.065:2	./.
chr4	158065038	rs12507409	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,179:32:179:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,170:32:170:1.00:2	0/1:0,182:32:182:1.00:2	0/1:0,172:33:172:1.00:2	0/1:0,183:33:183:1.00:2	0/1:1,173:32:174:0.994:2	0/1:0,176:33:176:1.00:2	0/1:1,176:32:177:0.994:2	0/1:0,171:32:172:1.00:2
chr4	158073910	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:34:193:0.021:2	./.
chr4	158073913	rs1801154	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,91:31:194:0.469:2
chr4	158238830	rs4302506	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:97,82:30:179:0.458:2	0/1:44,54:28:98:0.551:2	0/1:16,15:29:31:0.484:2	0/1:94,97:29:191:0.508:2	0/1:84,46:29:130:0.354:2	0/1:97,97:29:194:0.500:2	./.	0/1:110,83:29:193:0.430:2	0/1:102,86:30:188:0.457:2	0/1:97,82:30:179:0.458:2	0/1:94,89:30:183:0.486:2
chr4	159076826	rs6830702	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,168:33:168:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,158:32:158:1.00:2	0/1:0,108:32:108:1.00:2	0/1:1,149:32:150:0.993:2	0/1:86,58:33:144:0.403:2	./.	0/1:1,190:33:191:0.995:2	0/1:0,135:33:135:1.00:2	0/1:0,162:32:162:1.00:2
chr4	159091407	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:34:87:0.046:2
chr4	159158677	rs12504074	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,32:32:83:0.386:2	0/1:57,37:32:94:0.394:2	./.	./.	0/1:0,132:34:132:1.00:2	./.	./.
chr4	159538306	rs375392778	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,44:31:100:0.440:2	./.	./.	./.	./.
chr4	159601676	rs11559290	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,190:31:191:1.00:2	0/1:0,133:31:133:1.00:2	0/1:0,28:31:28:1.00:2	0/1:1,195:31:196:0.995:2	0/1:4,145:30:149:0.973:2	0/1:0,195:30:195:1.00:2	0/1:1,184:31:185:0.995:2	0/1:3,193:31:196:0.985:2	0/1:1,192:32:193:0.995:2	0/1:0,186:31:186:1.00:2	0/1:107,82:32:191:0.434:2
chr4	159618819	rs201579588	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,79:33:186:0.425:2
chr4	159631991	rs9410	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:28,13:33:41:0.317:2	0/1:16,19:30:35:0.543:2	./.	./.	0/1:31,24:32:55:0.436:2	./.	0/1:0,18:31:18:1.00:2	0/1:38,17:32:55:0.309:2	./.	./.	0/1:31,29:33:60:0.483:2
chr4	159780252	rs148251675	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,101:32:187:0.543:2
chr4	159782889	rs62001915	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,36:31:80:0.450:2
chr4	159789441	rs62001914	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:32:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	159791519	rs11946928	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:33:127:0.031:2	./.	./.	./.
chr4	159836336	rs78052401	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,57:32:127:0.449:2
chr4	159836467	rs10517695	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,66:32:112:0.589:2	./.	./.	./.
chr4	159881479	rs9784569	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,12:33:26:0.462:2	./.	0/1:35,31:32:66:0.470:2	0/1:64,39:32:103:0.379:2	./.	0/1:2,83:33:85:0.976:2	./.	0/1:0,82:33:83:1.00:2	./.
chr4	159894250	rs619128	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:32:45:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,25:33:25:1.00:2	0/1:0,36:32:36:1.00:2
chr4	159894305	rs662473	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:30:57:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,58:30:58:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,47:31:48:1.00:2	0/1:1,56:30:57:0.982:2
chr4	159894391	rs17037864	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,19:30:49:0.388:2	./.	./.	./.	./.	./.	./.
chr4	160251088	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:32:166:0.024:2	./.	./.	./.	./.	./.
chr4	160277276	rs1135004	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,15:33:31:0.484:2	0/1:7,6:32:13:0.462:2	0/1:0,2:32:2:1.00:2	0/1:0,29:32:29:1.00:2	0/1:22,9:31:31:0.290:2	0/1:25,12:31:37:0.324:2	0/1:21,21:32:42:0.500:2	0/1:0,38:31:38:1.00:2	./.	0/1:6,15:32:21:0.714:2	0/1:0,37:31:37:1.00:2
chr4	162307000	rs17040982	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,66:30:143:0.465:2	0/1:39,41:29:80:0.513:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	162307060	rs17040984	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,69:32:174:0.397:2	./.	0/1:96,76:33:172:0.442:2	./.	0/1:94,101:34:195:0.518:2	0/1:0,145:33:145:1.00:2	./.
chr4	162307433	rs376636535	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,13:32:20:0.650:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	162402270	rs144983464	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,84:31:180:0.467:2	./.	./.	./.	./.	./.
chr4	162577630	rs114905908	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,41:31:88:0.466:2	0/1:61,42:32:104:0.408:2	./.	./.	./.	./.
chr4	162841653	rs359502	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,11:31:32:0.344:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	164048199	rs4691895	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,53:33:53:1.00:2	0/1:0,23:32:23:1.00:2	./.	0/1:28,23:33:51:0.451:2	0/1:0,21:32:21:1.00:2	0/1:22,18:32:40:0.450:2	0/1:0,36:33:36:1.00:2	0/1:34,28:33:62:0.452:2	0/1:34,39:34:73:0.534:2	0/1:0,41:33:41:1.00:2	0/1:49,23:33:72:0.319:2
chr4	164085425	rs4691896	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,140:33:140:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,11:31:11:1.00:2	0/1:72,58:32:130:0.446:2	0/1:0,94:32:94:1.00:2	0/1:102,63:32:165:0.382:2	0/1:0,101:32:101:1.00:2	0/1:84,78:31:162:0.481:2	0/1:95,100:33:195:0.513:2	0/1:0,151:32:152:1.00:2	0/1:107,91:33:198:0.460:2
chr4	164087614	rs35063973	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.
chr4	164247528	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:33:123:0.033:2	./.	./.	./.	./.
chr4	164247696	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,8:32:55:0.145:2
chr4	164271540	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:32:133:0.030:2	./.	./.
chr4	164271729	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:33:179:0.022:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	164272703	rs11946004	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,57:31:121:0.471:2	./.	0/1:80,41:32:122:0.339:2	./.
chr4	164272857	rs35164156	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,22:33:44:0.500:2	0/1:8,9:32:17:0.529:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	164393117	rs11735477	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,53:31:118:0.449:2	./.	./.	0/1:85,57:32:142:0.401:2	0/1:70,75:31:145:0.517:2	0/1:0,119:32:119:1.00:2	0/1:30,57:32:87:0.655:2	0/1:77,63:32:140:0.450:2
chr4	164415930	rs2276977	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,16:31:45:0.356:2	./.	0/1:12,11:30:23:0.478:2	./.
chr4	164433954	rs17576308	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,25:32:63:0.397:2	./.	0/1:27,43:32:70:0.614:2	./.
chr4	164435265	rs2304802	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:33:36:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,4:32:4:1.00:2	0/1:2,19:33:21:0.905:2	./.	0/1:10,15:33:25:0.600:2	0/1:16,16:32:32:0.500:2	./.	./.	./.	0/1:17,26:32:43:0.605:2
chr4	164436515	rs76050545	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,82:32:170:0.482:2	./.	./.	./.
chr4	164440581	rs1561736	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,141:33:144:0.979:2	0/1:1,79:32:80:0.988:2	0/1:0,13:33:13:1.00:2	0/1:2,161:33:163:0.988:2	0/1:54,70:32:124:0.565:2	0/1:75,72:32:147:0.490:2	0/1:58,52:32:110:0.473:2	./.	./.	./.	0/1:88,82:33:170:0.482:2
chr4	164466824	rs13130399	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,159:32:159:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,173:31:173:1.00:2	0/1:77,64:31:141:0.454:2	0/1:86,92:31:178:0.517:2	0/1:107,80:32:187:0.428:2	./.	./.	./.	0/1:75,75:31:150:0.500:2
chr4	165118652	rs2288675	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,67:32:127:0.528:2	0/1:55,42:32:97:0.433:2	0/1:1,10:30:11:0.909:2	0/1:62,46:32:108:0.426:2	0/1:41,23:31:65:0.359:2	./.	0/1:30,19:32:49:0.388:2	0/1:2,68:31:70:0.971:2	0/1:1,92:32:93:0.989:2	0/1:53,33:31:86:0.384:2	./.
chr4	165118718	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:32:73:0.055:2	./.	./.	./.	./.
chr4	165118757	rs115041268	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:32:74:0.054:2	./.	./.	./.	./.
chr4	165118796	rs2288674	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,39:31:71:0.549:2	0/1:30,32:31:62:0.516:2	0/1:0,21:31:21:1.00:2	0/1:43,37:31:80:0.463:2	0/1:22,31:31:53:0.585:2	./.	0/1:29,22:31:51:0.431:2	0/1:5,62:31:67:0.925:2	0/1:0,61:32:61:1.00:2	0/1:40,40:32:80:0.500:2	./.
chr4	165878335	rs3733418	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,67:28:170:0.394:2	./.	./.	./.	0/1:87,50:29:137:0.365:2	./.	0/1:78,58:28:136:0.426:2
chr4	165878609	rs3196673	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:54,55:33:109:0.505:2	0/1:46,47:32:93:0.505:2	./.	0/1:61,62:33:124:0.504:2	./.	0/1:74,54:32:128:0.422:2	0/1:3,97:32:100:0.970:2	0/1:52,61:33:113:0.540:2	0/1:54,58:33:112:0.518:2	0/1:1,125:33:126:0.992:2	0/1:75,60:33:135:0.444:2
chr4	165878731	rs73002512	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,41:32:91:0.451:2	./.	./.	./.
chr4	165879007	rs10034083	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,20:32:20:1.00:2	0/1:0,20:32:20:1.00:2	./.	0/1:14,14:32:28:0.500:2	./.	0/1:12,13:31:25:0.520:2	0/1:0,30:31:30:1.00:2	0/1:10,14:30:24:0.583:2	0/1:16,6:33:22:0.273:2	0/1:0,21:32:21:1.00:2	0/1:21,13:30:34:0.382:2
chr4	165879381	rs10001548	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:4,113:33:117:0.966:2	0/1:0,64:32:64:1.00:2	./.	0/1:85,87:32:172:0.506:2	./.	0/1:61,78:31:139:0.561:2	0/1:2,87:33:89:0.978:2	0/1:1,117:32:118:0.992:2	0/1:89,67:33:156:0.429:2	0/1:3,118:33:121:0.975:2	0/1:90,75:33:165:0.455:2
chr4	165891154	rs200050744	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,4:32:86:0.047:2	./.	./.	./.	0/1:81,4:35:85:0.047:2	./.	0/1:82,5:29:87:0.057:2
chr4	165961551	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,4:32:39:0.103:2	./.	./.	./.	./.	./.	./.
chr4	165961985	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:32:107:0.037:2	./.	./.	./.	./.
chr4	165981142	rs6819917	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:9,10:32:19:0.526:2	./.	./.	0/1:9,12:33:21:0.571:2	./.	./.	./.	0/1:7,9:32:16:0.563:2	./.	0/1:3,4:30:7:0.571:2	./.
chr4	165981670	rs17045936	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:23,34:33:58:0.596:2	0/1:25,21:33:46:0.457:2	./.	0/1:31,18:33:49:0.367:2	./.	./.	./.	0/1:46,29:32:75:0.387:2	./.	0/1:29,29:32:58:0.500:2	./.
chr4	166021811	rs6536890	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,46:32:105:0.438:2	./.	./.	./.	0/1:64,27:33:91:0.297:2	0/1:64,58:34:122:0.475:2	./.	./.
chr4	166141086	rs202185247	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:154,41:31:195:0.210:2	0/1:90,20:31:110:0.182:2	0/1:22,7:29:29:0.241:2	./.	./.	0/1:165,31:31:196:0.158:2	0/1:123,24:32:147:0.163:2	./.	./.	./.	0/1:169,26:33:195:0.133:2
chr4	166159933	rs201033884	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,24:33:195:0.123:2
chr4	166231868	rs28678193	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,79:33:135:0.585:2	0/1:46,44:32:90:0.489:2	0/1:12,4:34:16:0.250:2	0/1:84,75:32:161:0.472:2	./.	0/1:0,139:32:140:1.00:2	./.	0/1:8,167:32:176:0.954:2	0/1:1,183:33:184:0.995:2	./.	0/1:103,86:33:189:0.455:2
chr4	166263004	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:32:171:0.023:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	166263047	rs17585739	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,68:32:69:0.986:2	0/1:119,5:31:124:0.040:2	./.	./.	./.
chr4	166300597	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:32:82:0.049:2	./.
chr4	166336382	rs11736871	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:48,53:30:101:0.525:2	0/1:34,30:29:64:0.469:2	0/1:4,8:29:12:0.667:2	./.	./.	./.	./.	0/1:6,129:30:135:0.956:2	./.	./.	0/1:76,56:29:132:0.424:2
chr4	166405584	rs4690821	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,26:31:79:0.329:2	./.	./.	./.	./.
chr4	166999164	rs17047232	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,25:29:60:0.417:2	./.	./.	./.	./.	./.	./.	./.
chr4	167012381	rs2654492	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:31:85:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,13:29:13:1.00:2	0/1:44,62:30:106:0.585:2	0/1:0,69:30:69:1.00:2	0/1:0,92:30:92:1.00:2	0/1:0,75:30:75:1.00:2	0/1:0,122:30:122:1.00:2	0/1:0,130:31:130:1.00:2	0/1:0,95:31:95:1.00:2	0/1:0,113:31:113:1.00:2
chr4	167012480	rs2646914	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:32:66:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,68:33:68:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,98:32:98:1.00:2
chr4	167020644	rs2291822	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,57:32:127:0.449:2	./.
chr4	167656073	rs1057377	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,99:31:200:0.495:2	0/1:108,92:30:200:0.460:2	0/1:84,109:30:193:0.565:2	./.	0/1:110,90:31:200:0.450:2	./.	./.	./.
chr4	168155178	rs11557043	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,39:33:88:0.443:2	0/1:18,16:32:34:0.471:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	169083694	rs6836994	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,126:33:129:0.977:2	0/1:0,64:32:64:1.00:2	0/1:1,10:33:11:0.909:2	0/1:82,70:32:152:0.461:2	0/1:1,100:32:101:0.990:2	0/1:75,61:32:136:0.449:2	0/1:94,75:32:169:0.444:2	0/1:78,81:32:159:0.509:2	0/1:89,64:33:153:0.418:2	0/1:0,132:33:132:1.00:2	0/1:101,93:33:194:0.479:2
chr4	169086441	rs4405979	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,69:31:71:0.972:2	0/1:1,41:30:42:0.976:2	0/1:0,8:31:8:1.00:2	0/1:52,38:30:90:0.422:2	0/1:0,51:29:51:1.00:2	0/1:46,33:30:79:0.418:2	0/1:45,36:30:81:0.444:2	0/1:61,29:30:90:0.322:2	0/1:62,32:32:94:0.340:2	0/1:1,71:30:72:0.986:2	0/1:70,39:31:109:0.358:2
chr4	169098914	rs477897	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:53,43:28:96:0.448:2	0/1:31,33:29:64:0.516:2	./.	0/1:59,62:29:121:0.512:2	0/1:1,89:28:90:0.989:2	./.	./.	0/1:82,63:28:145:0.434:2	./.	0/1:51,39:28:90:0.433:2	./.
chr4	169141799	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,4:32:17:0.235:2	./.
chr4	169143007	rs150280711	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,45:32:84:0.536:2	./.	./.	./.
chr4	169158471	rs6552559	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,24:31:61:0.393:2	0/1:39,20:30:59:0.339:2	0/1:25,19:32:44:0.432:2	./.
chr4	169158489	rs3828560	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,39:34:92:0.424:2	0/1:40,33:34:73:0.452:2	./.
chr4	169158531	rs3805396	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,75:33:155:0.487:2	0/1:58,65:33:123:0.528:2	./.
chr4	169182043	rs142627596	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,15:28:54:0.278:2	./.	./.	./.
chr4	169188780	rs576619	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,20:30:36:0.556:2	./.	./.	./.	./.	./.	0/1:82,108:31:190:0.568:2	0/1:120,75:31:196:0.385:2	./.
chr4	169197249	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:33:129:0.031:2
chr4	169197297	rs550625	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,33:32:73:0.452:2	0/1:59,51:33:110:0.464:2	./.	./.
chr4	169208334	rs72693161	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:31:15:0.600:2	./.	./.	./.	./.	./.	0/1:66,44:33:110:0.400:2	./.	./.
chr4	169227787	rs114673603	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:29:13:0.462:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	169279364	rs11736382	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,10:30:43:0.233:2	./.	./.	./.	./.
chr4	169282355	rs2684348	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,33:32:65:0.508:2	0/1:25,20:33:45:0.444:2	0/1:6,7:32:13:0.538:2	0/1:1,65:32:66:0.985:2	0/1:0,42:31:42:1.00:2	0/1:39,36:32:75:0.480:2	0/1:17,33:32:50:0.660:2	./.	./.	0/1:0,71:32:71:1.00:2	0/1:0,90:32:90:1.00:2
chr4	169299528	rs13110927	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,71:32:71:1.00:2	0/1:0,33:32:33:1.00:2	0/1:41,28:33:69:0.406:2	0/1:0,43:33:43:1.00:2	./.	./.	0/1:19,22:33:41:0.537:2	0/1:83,44:32:127:0.346:2
chr4	169305782	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:34:198:0.020:2	./.	./.
chr4	169315760	rs3749499	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:30:65:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,43:30:43:1.00:2	0/1:2,59:30:61:0.967:2	0/1:0,60:31:60:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,81:31:81:1.00:2
chr4	169317225	rs61995743	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,18:32:43:0.419:2	./.	./.	./.
chr4	169325233	rs17540213	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,35:31:87:0.402:2	./.	./.	0/1:61,47:32:108:0.435:2	./.
chr4	169327191	rs3762856	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:27,24:32:51:0.471:2	0/1:29,8:32:37:0.216:2	0/1:0,4:31:4:1.00:2	./.	./.	0/1:24,28:31:52:0.538:2	0/1:10,7:32:17:0.412:2	./.	0/1:34,20:33:54:0.370:2	0/1:1,27:32:28:0.964:2	./.
chr4	169336662	rs4692661	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,151:33:151:1.00:2	0/1:0,84:33:84:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,111:33:111:1.00:2	0/1:0,124:32:124:1.00:2	0/1:0,117:33:117:1.00:2	0/1:0,118:33:118:1.00:2	0/1:0,114:32:114:1.00:2	0/1:0,142:33:142:1.00:2	0/1:0,132:33:132:1.00:2	0/1:0,152:33:152:1.00:2
chr4	169341435	rs2130145	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,142:30:142:1.00:2	0/1:0,81:29:81:1.00:2	0/1:0,13:28:13:1.00:2	0/1:1,102:30:103:0.990:2	0/1:0,108:28:108:1.00:2	0/1:0,111:29:111:1.00:2	0/1:1,91:29:92:0.989:2	0/1:1,118:30:119:0.992:2	0/1:0,173:30:173:1.00:2	0/1:0,114:29:114:1.00:2	0/1:1,156:30:157:0.994:2
chr4	169343044	rs61740705	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:31:10:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	169348404	rs2319850	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,48:30:137:0.350:2	./.	./.	./.	./.	./.	./.
chr4	169348435	rs2712120	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,45:32:101:0.446:2	0/1:64,35:33:99:0.354:2	./.	./.	./.	./.
chr4	169362557	rs13151700	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,29:32:79:0.367:2	0/1:26,21:32:47:0.447:2	0/1:10,6:32:16:0.375:2	0/1:41,22:33:63:0.349:2	./.	0/1:40,30:32:70:0.429:2	./.	0/1:1,49:31:50:0.980:2	0/1:2,62:33:64:0.969:2	0/1:0,54:33:54:1.00:2	./.
chr4	169369820	rs2712113	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,106:33:107:0.991:2	0/1:0,60:32:60:1.00:2	0/1:0,8:32:8:1.00:2	0/1:58,41:32:99:0.414:2	0/1:0,49:31:49:1.00:2	0/1:58,62:31:120:0.517:2	0/1:54,35:32:89:0.393:2	0/1:1,95:32:96:0.990:2	0/1:0,131:33:131:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,121:32:121:1.00:2
chr4	169369853	rs2712114	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,133:33:133:1.00:2	0/1:0,75:32:75:1.00:2	0/1:2,12:32:14:0.857:2	0/1:75,53:33:128:0.414:2	0/1:0,84:32:84:1.00:2	0/1:66,77:32:143:0.538:2	0/1:73,44:32:117:0.376:2	0/1:4,126:33:130:0.969:2	0/1:0,168:33:168:1.00:2	0/1:0,122:33:122:1.00:2	0/1:0,175:33:175:1.00:2
chr4	169369862	rs10029536	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,31:31:84:0.369:2	./.	./.	./.	./.	./.	./.
chr4	169369920	rs12507582	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,50:31:106:0.472:2	0/1:22,14:31:36:0.389:2	0/1:4,5:29:9:0.556:2	0/1:40,33:30:73:0.452:2	./.	0/1:40,52:29:92:0.565:2	./.	0/1:3,76:30:79:0.962:2	0/1:1,69:31:70:0.986:2	0/1:0,62:30:62:1.00:2	./.
chr4	169382991	rs17612630	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:31:12:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	169393595	rs13149639	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,149:30:149:1.00:2	0/1:0,108:30:108:1.00:2	0/1:0,20:30:20:1.00:2	0/1:103,94:29:197:0.477:2	0/1:0,115:30:115:1.00:2	0/1:104,89:29:193:0.461:2	0/1:93,53:30:146:0.363:2	0/1:0,155:30:155:1.00:2	0/1:3,188:30:191:0.984:2	0/1:0,184:30:184:1.00:2	0/1:0,198:29:198:1.00:2
chr4	169432673	rs61051061	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,4:33:14:0.286:2	./.	./.	./.	0/1:20,16:32:36:0.444:2
chr4	169432841	rs1806729	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,18:31:46:0.391:2	0/1:26,6:31:32:0.188:2	./.	0/1:33,33:33:66:0.500:2	./.	0/1:42,20:31:62:0.323:2
chr4	169433326	rs7655494	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,15:32:51:0.294:2	0/1:29,13:31:42:0.310:2	./.	0/1:37,9:31:46:0.196:2	./.	0/1:23,11:30:34:0.324:2
chr4	169433327	rs7671781	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,15:32:51:0.294:2	0/1:29,13:32:42:0.310:2	./.	0/1:38,9:32:47:0.191:2	./.	0/1:24,11:30:35:0.314:2
chr4	169433333	rs7673220	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,13:30:48:0.271:2	0/1:31,12:29:43:0.279:2	./.	0/1:38,10:31:48:0.208:2	./.	0/1:27,11:31:38:0.289:2
chr4	169835134	rs1059444	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,24:32:43:0.558:2	0/1:18,9:33:27:0.333:2	./.	./.	./.	0/1:33,10:31:43:0.233:2	./.	./.	0/1:29,26:33:55:0.473:2	./.	./.
chr4	169928842	rs2877380	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,11:30:21:0.524:2	0/1:13,10:32:23:0.435:2	0/1:0,3:31:3:1.00:2	0/1:14,29:31:43:0.674:2	0/1:10,5:32:15:0.333:2	./.	0/1:0,25:32:25:1.00:2	0/1:0,44:31:44:1.00:2	./.	0/1:0,37:32:37:1.00:2	0/1:35,27:32:62:0.435:2
chr4	170017669	rs3749572	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,33:33:84:0.393:2
chr4	170037572	rs3811813	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,52:31:118:0.441:2	./.	./.	./.	./.	./.	0/1:38,56:31:94:0.596:2	./.
chr4	170077789	rs10518039	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:31:7:0.571:2	0/1:28,45:30:73:0.616:2	./.	0/1:37,30:29:67:0.448:2	0/1:28,26:31:54:0.481:2	./.	./.	0/1:38,29:29:67:0.433:2	0/1:43,47:30:90:0.522:2
chr4	170345893	rs7655924	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,50:33:91:0.549:2	./.	./.	./.	./.	./.	./.	./.
chr4	170347331	rs56252746	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,8:32:10:0.800:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	170398454	rs34099167	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:40,35:33:75:0.467:2	0/1:33,19:31:52:0.365:2	./.	0/1:38,46:32:84:0.548:2	./.	./.	0/1:45,19:30:64:0.297:2	0/1:40,33:32:73:0.452:2	./.	./.	0/1:58,54:33:112:0.482:2
chr4	170428901	rs33933790	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,41:32:88:0.466:2	0/1:17,17:32:34:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	170429402	rs17544885	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,45:33:89:0.506:2	./.	./.	./.	./.	./.	./.	./.
chr4	170477125	rs34540355	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,19:32:58:0.328:2	./.	./.	./.	./.	./.	./.
chr4	170482883	rs56064008	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,73:34:150:0.487:2	0/1:90,85:33:175:0.486:2	./.
chr4	170608823	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,5:28:147:0.034:2	./.	./.	./.
chr4	170618749	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,38:32:65:0.585:2	./.
chr4	170634390	rs1058868	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:50,35:31:85:0.412:2	0/1:40,18:33:58:0.310:2	./.	0/1:71,60:31:131:0.458:2	./.	./.	0/1:76,49:32:125:0.392:2	0/1:85,60:32:145:0.414:2	./.	./.	./.
chr4	170634408	rs1010713	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,58:32:114:0.509:2	./.	./.	./.	./.	./.	./.	./.
chr4	170663182	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,4:31:100:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr4	170663235	rs1047642	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:2,24:32:26:0.923:2	0/1:0,3:33:3:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,37:31:37:1.00:2	0/1:19,18:32:37:0.486:2	0/1:25,15:32:40:0.375:2	0/1:0,44:33:44:1.00:2	0/1:2,49:32:51:0.961:2	0/1:0,71:32:71:1.00:2
chr4	170669977	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,5:31:114:0.044:2	./.	./.	./.
chr4	170671841	rs61997071	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,31:30:56:0.554:2
chr4	170678993	rs11540095	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,3:29:3:1.00:2	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	0/1:0,2:33:2:1.00:2
chr4	170987636	rs1480544	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,22:34:23:0.957:2	0/1:0,20:32:20:1.00:2	0/1:3,6:32:9:0.667:2	0/1:22,22:33:44:0.500:2	0/1:16,14:31:30:0.467:2	0/1:17,17:32:34:0.500:2	0/1:14,20:33:34:0.588:2	0/1:32,6:33:38:0.158:2	./.	0/1:0,37:33:37:1.00:2	0/1:30,21:33:51:0.412:2
chr4	173232805	rs9312524	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,53:32:154:0.344:2	./.	./.	./.	./.	./.	./.	./.
chr4	173269737	rs114177519	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,18:28:43:0.419:2	./.	./.	./.	./.	./.	./.
chr4	174090004	rs3733477	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,33:29:33:1.00:2	0/1:2,32:31:34:0.941:2	./.	0/1:40,39:27:79:0.494:2	0/1:1,66:28:67:0.985:2	0/1:44,27:29:71:0.380:2	0/1:2,78:29:80:0.975:2	0/1:62,37:29:99:0.374:2	0/1:0,55:31:55:1.00:2	0/1:37,18:30:55:0.327:2	0/1:1,36:28:38:0.973:2
chr4	174090045	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:33:81:0.049:2	./.	./.
chr4	174090089	rs146537464	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,19:30:27:0.704:2	0/1:10,10:31:20:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	174213281	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:117,4:32:121:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr4	174219290	rs17059278	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,37:33:69:0.536:2	0/1:23,12:32:35:0.343:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	174225190	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,68:32:195:0.349:2	./.	./.	./.
chr4	174235233	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,3:34:54:0.056:2	./.	./.	./.
chr4	174238861	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:32:49:0.082:2
chr4	174254092	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:31:107:0.037:2	./.	./.	./.	./.	./.
chr4	174294589	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,5:29:147:0.034:2	./.	./.	./.	./.	./.
chr4	174298390	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:33:190:0.021:2	./.	./.	0/1:194,4:33:198:0.020:2
chr4	174298421	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2
chr4	174450288	rs59621536	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,46:29:70:0.657:2	./.	./.	./.	./.	./.
chr4	174537221	rs11726970	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,8:32:19:0.421:2	./.	./.	./.	0/1:58,52:32:110:0.473:2	0/1:101,77:32:178:0.433:2	0/1:97,70:33:167:0.419:2	0/1:94,68:32:162:0.420:2	./.
chr4	174537240	rs371830932	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:33:171:0.023:2	./.
chr4	174537356	rs34402795	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,18:30:32:0.563:2	./.	./.	./.	0/1:65,64:31:129:0.496:2	0/1:75,75:31:150:0.500:2	0/1:88,71:32:159:0.447:2	0/1:75,61:31:136:0.449:2	./.
chr4	174537471	rs13103221	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,8:31:18:0.444:2	./.	./.	./.	0/1:75,68:31:143:0.476:2	0/1:95,80:31:175:0.457:2	0/1:75,101:32:176:0.574:2	0/1:62,101:32:163:0.620:2	./.
chr4	175160254	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:32:146:0.028:2	./.	./.	./.	./.	./.
chr4	175180946	rs17854001	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,62:29:150:0.413:2
chr4	175225400	rs148050333	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,26:32:57:0.456:2
chr4	175225452	rs4695918	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,52:32:121:0.430:2	0/1:33,20:32:53:0.377:2	0/1:0,14:31:14:1.00:2	0/1:0,103:32:103:1.00:2	./.	0/1:62,46:32:108:0.426:2	0/1:58,36:32:94:0.383:2	0/1:81,48:32:129:0.372:2	./.	0/1:0,118:33:118:1.00:2	0/1:2,138:32:140:0.986:2
chr4	175225503	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,9:20:117:0.077:2
chr4	175237408	rs1553669	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,42:30:76:0.553:2	0/1:35,29:30:64:0.453:2	0/1:0,9:31:9:1.00:2	0/1:0,111:30:111:1.00:2	0/1:47,33:29:80:0.413:2	0/1:39,47:30:86:0.547:2	0/1:0,67:29:67:1.00:2	0/1:0,82:29:82:1.00:2	0/1:39,56:31:95:0.589:2	0/1:0,64:30:64:1.00:2	0/1:1,100:30:101:0.990:2
chr4	175238553	rs148600494	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,76:33:142:0.535:2
chr4	175414330	rs148874494	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,30:32:53:0.566:2	0/1:17,17:32:34:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	175443156	rs1050145	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,14:31:40:0.350:2	0/1:16,14:32:30:0.467:2	0/1:0,6:31:6:1.00:2	0/1:35,30:32:65:0.462:2	0/1:24,17:31:41:0.415:2	./.	0/1:43,25:31:68:0.368:2	0/1:0,56:32:56:1.00:2	./.	./.	0/1:25,24:32:49:0.490:2
chr4	175565178	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:32:155:0.026:2	./.
chr4	175598280	rs12648678	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,43:29:103:0.417:2	./.	./.	./.	./.	0/1:74,70:29:144:0.486:2
chr4	175598334	rs6812439	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,115:29:115:1.00:2	0/1:0,51:29:51:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,105:30:105:1.00:2	0/1:1,83:29:84:0.988:2	0/1:0,108:29:108:1.00:2	0/1:0,86:29:86:1.00:2	0/1:0,106:29:106:1.00:2	0/1:0,94:30:94:1.00:2	0/1:0,82:30:82:1.00:2	0/1:0,115:29:115:1.00:2
chr4	175598344	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:32:109:0.037:2	./.	./.
chr4	175688138	rs7696263	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:30:62:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,11:29:11:1.00:2	0/1:1,61:29:62:0.984:2	0/1:0,44:30:44:1.00:2	0/1:0,56:29:56:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,57:29:57:1.00:2	0/1:2,63:30:65:0.969:2	./.	0/1:40,18:30:58:0.310:2
chr4	175688141	rs12651268	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,33:32:63:0.524:2	0/1:14,11:32:25:0.440:2	0/1:4,7:29:11:0.636:2	0/1:33,31:31:64:0.484:2	0/1:27,18:31:45:0.400:2	0/1:30,29:31:59:0.492:2	./.	0/1:32,30:31:62:0.484:2	0/1:0,63:32:63:1.00:2	./.	./.
chr4	175898994	rs113485638	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,6:31:84:0.071:2	./.	./.	./.	./.	./.	./.	./.
chr4	175899001	rs111240604	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,7:33:82:0.086:2	0/1:119,6:31:125:0.048:2	0/1:106,6:33:112:0.054:2	0/1:141,8:34:149:0.054:2	0/1:164,12:34:176:0.068:2	0/1:98,13:32:111:0.117:2	./.	./.
chr4	175899075	rs140568401	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:87,6:31:93:0.065:2	./.	0/1:101,5:29:106:0.047:2	0/1:99,5:31:104:0.048:2	./.	./.	./.
chr4	175899076	rs61744599	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,6:32:92:0.065:2	./.	0/1:99,7:25:106:0.066:2	0/1:99,5:32:104:0.048:2	./.	./.	./.
chr4	175899079	rs151310201	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:85,6:31:91:0.066:2	./.	0/1:103,4:31:107:0.037:2	0/1:98,5:32:103:0.049:2	./.	./.	./.
chr4	177073026	rs4690661	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:31:80:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,98:30:98:1.00:2	0/1:0,57:30:57:1.00:2	0/1:1,85:30:86:0.988:2	0/1:0,50:30:50:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,67:31:67:1.00:2	0/1:3,89:31:92:0.967:2
chr4	177077246	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:33:90:0.044:2
chr4	177082069	rs7693453	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,25:32:50:0.500:2	0/1:22,20:32:42:0.476:2	./.	0/1:26,14:34:40:0.350:2	./.	./.
chr4	177087322	rs4388031	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,121:31:121:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,100:30:100:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,105:29:105:1.00:2	0/1:0,53:30:53:1.00:2	0/1:1,82:30:83:0.988:2	0/1:0,109:31:109:1.00:2	0/1:0,95:31:95:1.00:2	0/1:0,156:31:156:1.00:2
chr4	177089839	rs140459637	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,39:32:97:0.402:2	./.	./.	./.
chr4	177098281	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:31:58:0.069:2	./.	./.
chr4	177098285	rs17625943	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:31:8:0.375:2	0/1:0,24:31:24:1.00:2	0/1:22,19:31:41:0.463:2	./.	0/1:12,15:32:27:0.556:2	0/1:15,25:30:40:0.625:2	0/1:0,55:32:55:1.00:2	./.	0/1:26,35:31:61:0.574:2
chr4	177100644	rs11736872	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:31:9:0.667:2	./.	./.	0/1:63,75:30:138:0.543:2	0/1:42,61:31:103:0.592:2	./.	./.	0/1:86,63:30:150:0.423:2	0/1:72,60:31:132:0.455:2
chr4	177113779	rs12502935	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,25:30:76:0.329:2	./.	./.	./.	0/1:31,34:31:65:0.523:2	./.
chr4	177113836	rs6832177	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,5:32:8:0.625:2	0/1:2,102:33:104:0.981:2	0/1:46,41:33:87:0.471:2	./.	0/1:39,35:33:74:0.473:2	0/1:58,51:33:109:0.468:2	0/1:0,111:33:111:1.00:2	./.	0/1:107,67:33:174:0.385:2
chr4	177113956	rs2291244	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,9:32:25:0.360:2	./.
chr4	177137988	rs6827525	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,23:31:23:1.00:2	0/1:115,75:32:190:0.395:2	0/1:82,54:31:136:0.397:2	./.	0/1:107,75:32:182:0.412:2	./.	0/1:0,170:32:170:1.00:2	0/1:127,69:32:196:0.352:2	./.
chr4	177142611	rs35698542	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,30:33:72:0.417:2	0/1:26,25:32:51:0.490:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	177243366	rs12504337	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,16:32:39:0.410:2	./.	./.	./.
chr4	178231152	rs10013040	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,123:31:127:0.969:2	0/1:1,106:30:107:0.991:2	0/1:65,60:31:125:0.480:2	0/1:61,41:31:102:0.402:2	0/1:56,63:31:119:0.529:2	0/1:33,55:33:88:0.625:2	0/1:55,52:30:107:0.486:2	0/1:47,45:31:92:0.489:2
chr4	178256913	rs7689099	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,44:29:125:0.352:2	0/1:0,87:29:87:1.00:2	0/1:61,63:29:124:0.508:2	./.	0/1:76,66:29:142:0.465:2	0/1:67,59:31:126:0.468:2	0/1:52,41:29:93:0.441:2	0/1:82,94:30:176:0.534:2
chr4	178262683	rs17676249	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,27:31:51:0.529:2	0/1:22,28:31:50:0.560:2	./.	./.	./.	./.
chr4	178262784	rs34193982	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,24:30:55:0.436:2	0/1:27,14:30:41:0.341:2	./.	0/1:34,21:31:55:0.382:2	./.	./.	./.	0/1:21,25:31:46:0.543:2
chr4	178274565	rs2048074	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:33:55:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,54:31:54:1.00:2	0/1:23,17:32:40:0.425:2	0/1:0,52:32:52:1.00:2	0/1:0,26:32:26:1.00:2	0/1:31,25:32:56:0.446:2	0/1:35,21:33:56:0.375:2	0/1:0,51:33:51:1.00:2	0/1:0,65:32:65:1.00:2
chr4	178274610	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:32:42:0.095:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	178274694	rs10007075	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,31:32:33:0.939:2	0/1:0,31:32:31:1.00:2	./.	0/1:20,23:32:43:0.535:2	0/1:18,21:31:39:0.538:2	0/1:28,29:33:57:0.509:2	0/1:0,24:32:24:1.00:2	0/1:22,11:31:33:0.333:2	0/1:29,17:33:46:0.370:2	0/1:0,40:32:40:1.00:2	0/1:0,42:31:42:1.00:2
chr4	178274750	rs13112358	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,41:31:43:0.953:2	0/1:0,40:31:40:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,49:31:49:1.00:2	0/1:16,30:31:46:0.652:2	0/1:0,63:31:63:1.00:2	0/1:0,32:31:32:1.00:2	0/1:33,15:30:48:0.313:2	0/1:26,24:32:50:0.480:2	0/1:0,41:31:41:1.00:2	0/1:1,49:32:50:0.980:2
chr4	178274835	rs13112390	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:32:81:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,91:32:91:1.00:2	0/1:1,74:32:75:0.987:2	0/1:42,37:32:79:0.468:2	0/1:0,89:33:89:1.00:2	0/1:0,65:32:65:1.00:2	0/1:1,118:33:120:0.992:2
chr4	178281754	rs1876268	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,68:33:68:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,67:32:67:1.00:2
chr4	178357512	rs201125635	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,12:32:27:0.444:2	./.	./.
chr4	178358588	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:34:195:0.021:2
chr4	178359960	rs2228119	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,77:33:164:0.470:2	0/1:51,48:32:99:0.485:2	0/1:0,33:32:33:1.00:2	0/1:0,167:33:167:1.00:2	0/1:0,147:32:147:1.00:2	0/1:0,173:32:173:1.00:2	0/1:1,135:33:136:0.993:2	0/1:0,157:32:157:1.00:2	0/1:0,178:33:178:1.00:2	0/1:0,114:32:114:1.00:2	0/1:0,186:33:186:1.00:2
chr4	178881982	rs13109967	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:30:33:1.00:2	0/1:1,24:29:25:0.960:2	0/1:0,13:29:13:1.00:2	0/1:39,19:29:58:0.328:2	0/1:16,18:30:34:0.529:2	0/1:32,22:30:54:0.407:2	0/1:15,18:29:33:0.545:2	0/1:11,23:29:34:0.676:2	0/1:0,59:29:59:1.00:2	0/1:2,44:29:46:0.957:2	0/1:37,31:30:68:0.456:2
chr4	183064442	rs62352023	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:45,56:29:101:0.554:2	0/1:26,25:28:51:0.490:2	0/1:9,8:30:17:0.471:2	./.	0/1:44,49:28:93:0.527:2	0/1:3,119:29:122:0.975:2	./.	0/1:84,58:28:142:0.408:2	./.	0/1:49,50:28:99:0.505:2	./.
chr4	183268074	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:31:136:0.029:2	./.	./.	./.	./.
chr4	183549831	rs74199039	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:86,50:32:136:0.368:2	0/1:26,44:32:70:0.629:2	./.	0/1:79,67:32:147:0.459:2	./.	./.	./.	./.	./.	./.	./.
chr4	183601819	rs147269509	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,35:30:78:0.449:2	0/1:78,58:29:136:0.426:2
chr4	183601847	rs2871328	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,40:33:79:0.506:2	0/1:19,16:32:35:0.457:2	./.	0/1:2,99:32:101:0.980:2	0/1:45,36:32:81:0.444:2	0/1:42,48:33:90:0.533:2	0/1:58,38:33:96:0.396:2	0/1:62,45:33:107:0.421:2	0/1:60,52:33:112:0.464:2	./.	./.
chr4	183652175	rs10866256	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,105:32:105:1.00:2	0/1:0,59:33:59:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,178:33:178:1.00:2	0/1:2,118:32:120:0.983:2	0/1:0,130:32:130:1.00:2	0/1:0,144:32:144:1.00:2	0/1:0,151:32:151:1.00:2	0/1:0,146:33:146:1.00:2	0/1:1,129:33:130:0.992:2	0/1:0,137:32:137:1.00:2
chr4	183664501	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:32:149:0.027:2	./.	./.	./.	./.
chr4	183664522	rs7654255	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,7:29:14:0.500:2	0/1:70,47:29:117:0.402:2	./.	0/1:1,85:29:86:0.988:2	./.	0/1:0,111:29:111:1.00:2	0/1:66,46:30:112:0.411:2	0/1:54,40:29:94:0.426:2	./.
chr4	183674697	rs17263582	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:47,47:32:94:0.500:2	0/1:28,25:31:53:0.472:2	./.	./.	0/1:50,23:30:73:0.315:2	./.	./.	./.	0/1:63,45:32:109:0.417:2	0/1:54,34:32:88:0.386:2	0/1:0,103:31:103:1.00:2
chr4	183694657	rs375567039	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:32:197:0.020:2	./.	./.	./.	./.
chr4	183710332	rs61736044	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,35:30:73:0.479:2
chr4	183710350	rs372287883	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,27:32:70:0.386:2	0/1:35,14:32:49:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	183713630	rs6857162	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,56:33:104:0.538:2
chr4	183713714	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,23:30:44:0.523:2	./.	./.	./.	./.	./.
chr4	183714284	rs61732939	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,47:30:107:0.439:2	./.	./.	./.	./.	./.
chr4	183812618	rs141501926	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,27:32:63:0.429:2
chr4	183815688	rs4742	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,48:31:157:0.306:2	./.	0/1:88,78:29:166:0.470:2	0/1:116,54:30:170:0.318:2	0/1:79,84:30:163:0.515:2	./.	0/1:74,29:31:103:0.282:2	./.
chr4	183815736	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:143,4:33:147:0.027:2	./.	./.	./.	./.	./.	./.
chr4	184190233	rs11941467	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,34:32:95:0.358:2
chr4	184192278	rs11734376	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,39:31:65:0.600:2	0/1:33,25:31:58:0.431:2	./.	./.	./.	0/1:55,25:30:80:0.313:2	./.	./.	./.	0/1:45,23:31:68:0.338:2	./.
chr4	184203886	rs3814422	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:20,16:33:36:0.444:2	0/1:12,12:33:24:0.500:2	./.	0/1:26,16:32:42:0.381:2	./.	0/1:8,10:32:18:0.556:2	0/1:8,15:33:23:0.652:2	./.	./.	0/1:19,12:33:31:0.387:2	./.
chr4	184203990	rs17291770	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	184236868	rs4862155	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:30:6:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	184366145	rs11539203	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,52:28:107:0.491:2	./.	./.	0/1:32,42:27:75:0.568:2	./.	./.	./.
chr4	184426387	rs8872	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:31:44:1.00:2	0/1:1,22:31:23:0.957:2	0/1:6,4:32:10:0.400:2	0/1:32,45:31:77:0.584:2	0/1:0,93:31:93:1.00:2	0/1:1,109:32:110:0.991:2	0/1:0,87:31:87:1.00:2	0/1:0,92:32:92:1.00:2	./.	0/1:0,54:31:54:1.00:2	0/1:15,18:31:33:0.545:2
chr4	184570715	rs10015804	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,29:32:57:0.509:2	./.	./.	./.	./.	./.	0/1:24,21:32:45:0.467:2	./.
chr4	184572146	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,6:31:142:0.042:2	./.	./.	./.
chr4	184572207	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,4:32:23:0.174:2	./.	./.	./.	./.	0/1:185,8:33:193:0.041:2	./.	./.	./.
chr4	184572218	rs73002706	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:73,74:33:147:0.503:2	0/1:57,54:33:111:0.486:2	./.	./.	0/1:105,65:33:170:0.382:2	./.	./.	./.	./.	./.	./.
chr4	184595918	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,5:30:78:0.064:2	./.	./.	./.	./.
chr4	184600571	rs62357990	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,20:32:55:0.364:2
chr4	184600601	rs4241779	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,25:30:56:0.446:2	./.	0/1:44,22:29:66:0.333:2	0/1:0,26:28:26:1.00:2	./.	0/1:37,24:30:61:0.393:2	./.	0/1:42,16:29:58:0.276:2
chr4	184612553	rs67383011	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,40:32:105:0.381:2	./.	./.	0/1:57,33:33:90:0.367:2	./.	./.	./.	./.
chr4	184614874	rs4862234	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,20:31:39:0.513:2	0/1:23,18:33:41:0.439:2	./.	./.	./.	./.
chr4	184618936	rs62617790	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,57:31:115:0.496:2	./.	0/1:68,69:32:137:0.504:2	./.	0/1:85,55:32:140:0.393:2	./.	./.	./.
chr4	184622934	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:33:84:0.048:2	./.	./.	./.	./.	./.
chr4	184633786	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:30:119:0.034:2	./.	./.	./.	./.	./.
chr4	184930646	rs61730738	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,39:29:67:0.582:2	./.	0/1:33,32:30:65:0.492:2	./.	./.	./.
chr4	184931818	rs4861597	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:72,71:33:143:0.497:2	0/1:40,48:33:88:0.545:2	0/1:3,12:33:15:0.800:2	./.	0/1:70,79:32:149:0.530:2	./.	0/1:81,79:33:160:0.494:2	0/1:96,94:33:190:0.495:2	0/1:86,99:33:185:0.535:2	0/1:63,60:33:123:0.488:2	0/1:106,83:33:189:0.439:2
chr4	184932088	rs61730747	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,66:30:191:0.346:2	./.	0/1:120,64:30:184:0.348:2	./.	./.	./.
chr4	185012398	rs4479748	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,18:28:50:0.360:2	0/1:35,16:27:51:0.314:2	0/1:41,23:29:64:0.359:2	0/1:23,19:28:43:0.452:2	./.
chr4	185039014	rs116426631	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:27:14:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	185310053	rs59219184	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,45:31:95:0.474:2
chr4	185310205	rs376870150	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:31:155:0.026:2	./.
chr4	185310218	rs1131553	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,63:31:103:0.612:2	0/1:62,68:31:130:0.523:2	./.	0/1:0,121:32:121:1.00:2	0/1:67,76:31:143:0.531:2	./.	0/1:56,69:32:125:0.552:2	./.
chr4	185564299	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,9:34:196:0.046:2
chr4	185578328	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:33:45:0.089:2	./.
chr4	185582954	rs142122035	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,16:33:22:0.727:2	./.	./.	./.	./.	./.	./.
chr4	185587165	rs2463447	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,27:31:27:1.00:2	0/1:0,13:29:13:1.00:2	./.	0/1:0,27:32:27:1.00:2	0/1:1,25:29:26:0.962:2	0/1:0,19:30:19:1.00:2	0/1:0,19:30:19:1.00:2	0/1:1,26:31:27:0.963:2	0/1:0,49:31:49:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,43:31:43:1.00:2
chr4	185593505	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,59:32:128:0.461:2	./.	./.
chr4	185599489	rs34985821	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:105,91:32:196:0.464:2	0/1:61,58:32:119:0.487:2	0/1:21,3:33:24:0.125:2	./.	./.	./.	./.	0/1:109,90:31:199:0.452:2	./.	./.	./.
chr4	185615764	rs14969	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:75,58:32:133:0.436:2	0/1:50,44:32:94:0.468:2	0/1:14,8:31:22:0.364:2	./.	./.	./.	./.	0/1:118,76:31:194:0.392:2	./.	0/1:61,62:32:123:0.504:2	./.
chr4	185615768	rs3184982	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:72,61:32:134:0.459:2	0/1:50,44:32:94:0.468:2	0/1:15,7:28:22:0.318:2	./.	./.	./.	./.	0/1:117,79:32:197:0.403:2	./.	0/1:56,64:32:120:0.533:2	./.
chr4	185622046	rs11728389	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,35:32:86:0.407:2	0/1:20,27:31:47:0.574:2	0/1:3,4:31:7:0.571:2	0/1:0,58:30:58:1.00:2	0/1:1,68:30:69:0.986:2	0/1:0,91:30:91:1.00:2	0/1:0,47:29:47:1.00:2	0/1:54,44:30:98:0.449:2	0/1:69,36:31:105:0.343:2	0/1:53,34:30:87:0.391:2	0/1:0,83:32:84:1.00:2
chr4	185623312	rs28660669	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:46,39:28:85:0.459:2	0/1:28,36:31:64:0.563:2	0/1:11,4:30:15:0.267:2	./.	./.	./.	./.	0/1:52,27:30:79:0.342:2	./.	0/1:37,22:29:59:0.373:2	./.
chr4	185634144	rs4616798	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:10,23:32:33:0.697:2	0/1:12,5:32:17:0.294:2	./.	./.	./.	./.	./.	0/1:26,18:32:46:0.409:2	./.	0/1:11,17:32:28:0.607:2	./.
chr4	185637699	rs6552804	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:97,91:33:188:0.484:2	0/1:62,42:32:104:0.404:2	0/1:15,13:31:28:0.464:2	./.	./.	./.	./.	0/1:83,83:32:166:0.500:2	./.	0/1:100,92:32:192:0.479:2	./.
chr4	185637711	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:32:182:0.022:2	./.	./.	./.	./.
chr4	185650154	rs6818447	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:58,67:33:125:0.536:2	0/1:41,30:32:71:0.423:2	0/1:12,10:31:22:0.455:2	./.	./.	./.	./.	0/1:85,64:32:149:0.430:2	./.	0/1:70,56:32:126:0.444:2	./.
chr4	185652147	rs3806796	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,38:32:84:0.452:2	0/1:26,21:32:47:0.447:2	./.	0/1:0,72:31:72:1.00:2	0/1:1,58:31:59:0.983:2	0/1:0,69:31:69:1.00:2	0/1:0,44:32:44:1.00:2	0/1:35,33:31:68:0.485:2	0/1:57,41:32:98:0.418:2	0/1:45,39:31:84:0.464:2	0/1:2,114:32:116:0.983:2
chr4	185655171	rs902174	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	0/1:6,3:28:9:0.333:2	./.	./.	./.
chr4	185655190	rs876840	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:35:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	185655192	rs876839	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.
chr4	185684324	rs41278585	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,17:29:49:0.347:2	./.	./.	./.	./.
chr4	185686032	rs2292898	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,40:31:82:0.488:2	0/1:26,22:31:48:0.458:2	0/1:0,12:31:12:1.00:2	0/1:63,45:30:108:0.417:2	./.	./.	0/1:0,79:30:79:1.00:2	0/1:70,49:30:119:0.412:2	0/1:60,40:29:100:0.400:2	0/1:48,30:31:78:0.385:2	0/1:0,90:30:90:1.00:2
chr4	185686065	rs34107464	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,46:31:100:0.460:2	./.	./.	./.	./.
chr4	185687863	rs11727009	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:35,34:29:69:0.493:2	0/1:22,17:30:39:0.436:2	./.	./.	./.	./.	0/1:55,29:30:84:0.345:2	./.	0/1:50,37:31:87:0.425:2	./.	0/1:1,102:31:103:0.990:2
chr4	185701549	rs1803898	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,11:32:34:0.324:2	0/1:18,7:31:25:0.280:2	./.	0/1:22,12:30:34:0.353:2	0/1:0,48:31:48:1.00:2	0/1:0,45:30:45:1.00:2	./.	0/1:14,14:31:28:0.500:2	0/1:10,21:32:31:0.677:2	0/1:15,27:31:42:0.643:2	./.
chr4	185941465	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:34:135:0.030:2	./.	./.	./.	./.
chr4	186097045	rs6855305	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:67,47:32:114:0.412:2	0/1:32,32:32:64:0.500:2	0/1:0,12:32:12:1.00:2	0/1:48,67:32:116:0.583:2	0/1:85,4:33:89:0.045:2	0/1:55,39:31:94:0.415:2	0/1:45,48:32:93:0.516:2	0/1:66,47:32:113:0.416:2	0/1:53,76:34:129:0.589:2	0/1:53,37:33:90:0.411:2	./.
chr4	186111639	rs1133657	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:115,73:33:188:0.388:2	0/1:116,75:33:192:0.393:2	./.	0/1:115,82:33:197:0.416:2	0/1:2,182:33:184:0.989:2	0/1:114,86:33:200:0.430:2	./.	./.	0/1:99,94:34:193:0.487:2	0/1:102,83:33:185:0.449:2	0/1:2,176:33:178:0.989:2
chr4	186112111	rs3108237	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:71,57:32:128:0.445:2	0/1:31,29:32:60:0.483:2	./.	0/1:69,70:33:139:0.504:2	0/1:0,84:32:84:1.00:2	0/1:49,51:32:100:0.510:2	0/1:50,43:32:93:0.462:2	0/1:43,73:33:116:0.629:2	0/1:89,66:33:155:0.426:2	0/1:45,42:33:87:0.483:2	0/1:2,175:33:177:0.989:2
chr4	186112135	rs147009616	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,39:31:88:0.443:2	./.
chr4	186185627	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:32:153:0.026:2	./.	./.
chr4	186188192	rs371336554	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:32:186:0.022:2	./.	./.	./.	./.
chr4	186209193	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:115,4:30:119:0.034:2	./.	./.	0/1:148,4:32:152:0.026:2	./.	./.	./.
chr4	186294143	rs144800425	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,61:33:143:0.427:2	./.	./.	./.	./.
chr4	186294198	rs3797026	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,5:31:12:0.417:2	0/1:51,33:31:84:0.393:2	0/1:1,95:31:96:0.990:2	0/1:50,31:31:81:0.383:2	0/1:62,56:32:118:0.475:2	./.	./.	./.	./.
chr4	186299260	rs2030802	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,34:33:65:0.523:2	0/1:22,19:33:41:0.463:2	0/1:3,4:31:7:0.571:2	0/1:18,36:33:54:0.667:2	0/1:0,49:32:49:1.00:2	0/1:12,30:32:42:0.714:2	0/1:21,27:32:48:0.563:2	./.	./.	./.	./.
chr4	186329493	rs180730337	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,103:32:190:0.542:2	./.	./.	./.	./.
chr4	186339584	rs10003160	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,130:33:130:1.00:2	0/1:0,56:33:56:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,109:32:109:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,128:32:129:1.00:2	0/1:1,66:33:67:0.985:2	0/1:0,118:32:118:1.00:2	0/1:0,143:33:143:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,163:32:163:1.00:2
chr4	186339620	rs61735474	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,3:31:9:0.333:2	0/1:51,71:33:122:0.582:2	./.	./.	./.	./.	./.	./.	./.
chr4	186346988	rs202236752	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,11:30:21:0.524:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	186347055	rs2289720	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:30:67:1.00:2	0/1:0,31:30:31:1.00:2	0/1:4,4:32:8:0.500:2	0/1:28,28:29:56:0.500:2	./.	0/1:35,26:29:61:0.426:2	0/1:27,17:28:44:0.386:2	0/1:0,62:29:62:1.00:2	0/1:0,70:29:71:1.00:2	0/1:0,61:29:61:1.00:2	0/1:2,64:29:66:0.970:2
chr4	186353227	rs187636573	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,30:32:72:0.417:2	./.	./.	./.	./.
chr4	186357523	rs7697970	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,62:32:62:1.00:2	./.	0/1:31,36:32:67:0.537:2	0/1:20,32:32:52:0.615:2	0/1:0,64:32:64:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,53:31:53:1.00:2	0/1:1,106:32:107:0.991:2
chr4	186379286	rs34800518	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,11:28:17:0.647:2	./.
chr4	186379371	rs7687202	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:31:67:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,31:29:31:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,32:30:32:1.00:2	0/1:2,33:31:35:0.943:2	0/1:0,53:32:53:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,81:31:81:1.00:2
chr4	186379735	rs6827370	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:31:16:0.375:2	0/1:5,3:31:8:0.375:2	./.	./.	./.	0/1:10,3:29:13:0.231:2	./.	./.	0/1:13,5:31:18:0.278:2	./.	0/1:6,15:29:21:0.714:2
chr4	186379899	rs35596415	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:32:4:1.00:2	0/1:37,38:33:75:0.507:2	0/1:0,51:32:51:1.00:2	0/1:43,39:32:82:0.476:2	0/1:23,15:33:38:0.395:2	0/1:33,18:32:51:0.353:2	0/1:39,39:34:78:0.500:2	0/1:40,35:33:75:0.467:2	0/1:46,54:33:100:0.540:2
chr4	186380243	rs59319722	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,17:33:34:0.500:2	0/1:1,29:32:30:0.967:2	0/1:30,15:31:45:0.333:2	0/1:10,8:32:18:0.444:2	0/1:29,10:32:39:0.256:2	0/1:14,16:33:30:0.533:2	0/1:22,11:33:33:0.333:2	0/1:23,22:32:45:0.489:2
chr4	186380295	rs36007437	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,13:32:35:0.371:2	0/1:46,17:31:63:0.270:2	./.	0/1:38,18:32:56:0.321:2	0/1:31,27:33:58:0.466:2	0/1:31,25:32:56:0.446:2	0/1:45,27:32:72:0.375:2
chr4	186380515	rs11132306	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:31:5:1.00:2	0/1:33,28:31:61:0.459:2	0/1:0,31:31:31:1.00:2	0/1:35,21:31:56:0.375:2	0/1:20,20:32:40:0.500:2	0/1:35,24:32:59:0.407:2	0/1:43,31:32:74:0.419:2	0/1:36,21:31:57:0.368:2	0/1:44,33:32:77:0.429:2
chr4	186380846	rs7698680	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:32:7:1.00:2	0/1:24,23:31:47:0.489:2	0/1:1,28:31:29:0.966:2	0/1:27,16:32:43:0.372:2	0/1:27,14:31:41:0.341:2	0/1:25,20:32:45:0.444:2	0/1:29,27:33:56:0.482:2	0/1:23,22:32:45:0.489:2	0/1:30,32:32:62:0.516:2
chr4	186381115	rs7699687	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:32:5:1.00:2	0/1:26,25:31:51:0.490:2	0/1:1,44:31:45:0.978:2	0/1:25,32:32:57:0.561:2	0/1:26,13:32:39:0.333:2	0/1:34,29:31:63:0.460:2	0/1:28,38:33:66:0.576:2	0/1:27,16:32:43:0.372:2	0/1:27,32:32:59:0.542:2
chr4	186381165	rs7699724	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:30:8:1.00:2	0/1:27,22:30:49:0.449:2	0/1:2,41:30:43:0.953:2	0/1:33,21:30:54:0.389:2	0/1:23,15:31:38:0.395:2	0/1:28,32:30:60:0.533:2	0/1:41,31:31:74:0.431:2	0/1:29,21:31:50:0.420:2	0/1:58,52:32:110:0.473:2
chr4	186382206	rs11132309	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:31:5:1.00:2	0/1:45,35:32:80:0.438:2	0/1:2,48:31:50:0.960:2	0/1:34,41:32:75:0.547:2	0/1:39,29:32:68:0.426:2	0/1:49,41:32:90:0.456:2	0/1:45,33:33:78:0.423:2	0/1:51,30:32:81:0.370:2	0/1:76,41:33:117:0.350:2
chr4	186423637	rs4635850	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,46:30:46:1.00:2	0/1:22,21:29:43:0.488:2	0/1:0,41:30:42:1.00:2	./.	0/1:0,41:30:41:1.00:2	0/1:12,22:31:34:0.647:2	0/1:0,38:30:38:1.00:2	0/1:15,29:32:44:0.659:2
chr4	186456502	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,5:27:165:0.030:2
chr4	186541301	rs61753946	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,52:30:103:0.505:2	./.	./.	0/1:57,34:31:91:0.374:2	./.	./.
chr4	186544879	rs61910743	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,15:28:22:0.682:2	./.	./.	./.	./.	0/1:18,15:28:33:0.455:2
chr4	186599992	rs67212481	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,9:33:19:0.474:2	0/1:2,8:32:10:0.800:2	./.	./.	./.	./.	./.	./.	0/1:24,6:32:30:0.200:2	0/1:13,9:31:22:0.409:2	./.
chr4	186997797	rs192262541	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,9:31:32:0.281:2	./.	./.	./.	./.	./.	./.
chr4	187004074	rs3775291	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,16:32:33:0.485:2	./.	./.	0/1:35,33:31:68:0.485:2	./.	./.	0/1:37,34:32:71:0.479:2
chr4	187004217	rs3775290	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,24:32:57:0.421:2	0/1:31,16:30:47:0.340:2	./.	./.	./.	0/1:40,30:33:70:0.429:2	./.	./.
chr4	187074833	rs4862650	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,168:30:168:1.00:2	0/1:0,113:30:113:1.00:2	0/1:0,16:31:16:1.00:2	0/1:2,169:31:171:0.988:2	0/1:0,183:29:184:1.00:2	0/1:91,98:30:189:0.519:2	0/1:2,165:30:167:0.988:2	0/1:0,156:29:156:1.00:2	0/1:2,168:31:170:0.988:2	0/1:0,155:30:155:1.00:2	0/1:1,150:30:151:0.993:2
chr4	187077206	rs4862653	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:29:50:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,58:29:58:1.00:2	0/1:34,31:30:65:0.477:2	0/1:40,20:29:60:0.333:2	0/1:0,70:29:70:1.00:2	0/1:0,58:30:58:1.00:2	0/1:0,74:29:74:1.00:2	0/1:0,75:28:75:1.00:2
chr4	187078785	rs2276924	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:28:22:1.00:2	0/1:0,12:28:12:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,46:27:46:1.00:2	0/1:0,12:23:12:1.00:2	0/1:12,20:27:32:0.625:2	0/1:14,13:29:27:0.481:2	0/1:0,24:29:24:1.00:2	0/1:0,17:29:17:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,19:29:19:1.00:2
chr4	187078819	rs2276923	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,9:31:20:0.450:2	./.	./.
chr4	187078866	rs2276922	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,21:32:32:0.656:2	0/1:4,10:32:14:0.714:2	0/1:0,4:32:4:1.00:2	0/1:0,50:32:50:1.00:2	0/1:16,16:30:32:0.500:2	0/1:15,27:32:42:0.643:2	./.	./.	0/1:17,16:33:33:0.485:2	./.	0/1:15,9:31:24:0.375:2
chr4	187084698	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,4:32:194:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr4	187088248	rs9991339	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	187113041	rs1055138	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,5:27:14:0.357:2	0/1:0,3:26:3:1.00:2	0/1:2,4:28:6:0.667:2	0/1:0,12:26:12:1.00:2	./.	0/1:8,6:27:14:0.429:2	./.	0/1:0,5:27:5:1.00:2	./.	./.	0/1:0,2:27:2:1.00:2
chr4	187118235	rs11932764	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,7:32:10:0.700:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	187120211	rs13146272	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,29:31:73:0.397:2	0/1:28,18:31:46:0.391:2	./.	0/1:2,83:30:85:0.976:2	0/1:45,24:29:70:0.348:2	./.	0/1:0,52:31:52:1.00:2	0/1:0,77:31:77:1.00:2	0/1:56,54:32:111:0.491:2	0/1:29,35:32:64:0.547:2	0/1:67,49:31:116:0.422:2
chr4	187122319	rs3736455	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,21:30:47:0.447:2	0/1:32,15:28:47:0.319:2	0/1:0,4:28:4:1.00:2	0/1:3,57:29:60:0.950:2	0/1:24,19:28:43:0.442:2	./.	0/1:0,57:28:57:1.00:2	0/1:2,53:30:55:0.964:2	0/1:40,34:30:75:0.459:2	0/1:0,39:29:39:1.00:2	0/1:48,37:30:85:0.435:2
chr4	187122332	rs34745240	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,27:30:60:0.450:2	./.	./.	./.
chr4	187122355	rs3736456	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,40:32:72:0.556:2
chr4	187126449	rs10029149	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,7:32:16:0.438:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	187158034	rs3733402	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,32:32:74:0.432:2	0/1:18,30:32:48:0.625:2	0/1:0,12:31:12:1.00:2	0/1:0,104:31:104:1.00:2	0/1:58,32:31:90:0.356:2	0/1:59,43:31:102:0.422:2	0/1:123,5:33:128:0.039:2	0/1:2,121:31:123:0.984:2	0/1:67,52:32:119:0.437:2	0/1:0,104:31:104:1.00:2	0/1:80,43:32:123:0.350:2
chr4	187173012	rs4253301	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,15:29:34:0.441:2	./.	./.	./.	./.
chr4	187178473	rs4253325	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,12:32:12:1.00:2	0/1:43,29:33:72:0.403:2	./.	./.	./.	./.	./.	./.	0/1:63,26:34:89:0.292:2
chr4	187179210	rs925453	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,184:30:186:0.989:2	0/1:0,110:29:110:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,163:30:163:1.00:2	0/1:1,151:29:152:0.993:2	0/1:0,177:30:177:1.00:2	./.	0/1:2,173:29:175:0.989:2	0/1:0,162:30:162:1.00:2	0/1:2,169:30:171:0.988:2	0/1:92,83:30:175:0.474:2
chr4	187192807	rs281875267	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:31:154:0.026:2	./.	./.
chr4	187195373	rs5973	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,79:32:183:0.432:2	./.	./.	./.
chr4	187201211	rs5974	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,11:29:31:0.355:2	./.	0/1:24,16:28:40:0.400:2	0/1:8,13:29:21:0.619:2	0/1:12,20:29:32:0.625:2	./.	./.	./.
chr4	187201685	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:31:144:0.028:2	./.	./.	./.	./.	./.
chr4	187205301	rs5970	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,68:30:128:0.531:2	./.	0/1:60,38:29:98:0.388:2	0/1:65,53:29:118:0.449:2	0/1:69,41:29:110:0.373:2	./.	./.	./.
chr4	187205333	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,42:32:87:0.483:2	./.	./.	./.	./.
chr4	187455099	rs28383652	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,30:31:63:0.476:2	./.	./.	./.	./.
chr4	187455329	rs8192549	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,30:31:86:0.349:2	./.	./.	./.	./.	./.	./.	0/1:52,50:32:102:0.490:2
chr4	187455399	rs28383653	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,56:31:120:0.467:2	./.	./.	./.
chr4	187455483	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,52:29:126:0.413:2	0/1:54,42:29:96:0.438:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	187516880	rs1298865	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:33:12:0.500:2	./.	0/1:45,37:32:82:0.451:2	./.	./.	./.	0/1:34,33:32:67:0.493:2	0/1:37,31:33:68:0.456:2	./.
chr4	187518197	rs376106855	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,5:27:70:0.071:2	./.
chr4	187519206	rs1280097	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:32:95:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,133:32:133:1.00:2	0/1:0,163:32:163:1.00:2	0/1:0,131:32:131:1.00:2	./.	0/1:0,152:32:152:1.00:2	0/1:0,130:33:130:1.00:2	0/1:0,115:32:115:1.00:2	0/1:0,110:32:111:1.00:2
chr4	187525020	rs2637777	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,35:28:71:0.493:2	./.	./.	./.	0/1:33,54:29:87:0.621:2	0/1:29,33:29:62:0.532:2	./.
chr4	187531022	rs28647489	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,59:30:152:0.388:2	./.
chr4	187534363	rs2249916	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,4:30:35:0.114:2	0/1:12,8:30:20:0.400:2	0/1:0,2:33:2:1.00:2	0/1:30,14:31:44:0.318:2	0/1:33,4:31:37:0.108:2	./.	0/1:29,20:32:49:0.408:2	0/1:2,55:30:57:0.965:2	0/1:0,36:32:36:1.00:2	0/1:26,22:32:48:0.458:2	0/1:0,44:31:44:1.00:2
chr4	187534375	rs2249917	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,7:28:38:0.184:2	0/1:10,11:29:21:0.524:2	0/1:0,4:29:4:1.00:2	0/1:43,19:28:62:0.306:2	0/1:38,8:24:46:0.174:2	./.	0/1:39,20:28:59:0.339:2	0/1:2,77:28:79:0.975:2	0/1:0,46:29:46:1.00:2	./.	0/1:0,52:28:52:1.00:2
chr4	187538330	rs1280099	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,55:33:116:0.474:2	0/1:25,27:33:53:0.519:2	0/1:0,19:32:19:1.00:2	0/1:41,48:33:89:0.539:2	0/1:35,29:32:64:0.453:2	./.	0/1:37,36:33:73:0.493:2	0/1:0,107:32:107:1.00:2	0/1:0,95:33:95:1.00:2	./.	0/1:0,128:32:128:1.00:2
chr4	187538942	rs1280098	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,14:33:46:0.304:2	0/1:29,18:32:47:0.383:2	./.	0/1:27,24:33:51:0.471:2	0/1:28,28:33:56:0.500:2	./.	0/1:45,25:33:70:0.357:2	0/1:2,69:32:71:0.972:2	0/1:0,56:33:56:1.00:2	0/1:32,19:33:51:0.373:2	0/1:0,89:33:89:1.00:2
chr4	187539588	rs3733406	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,34:32:71:0.479:2	./.	./.	./.	0/1:64,66:33:130:0.508:2	./.	./.
chr4	187540996	rs11931107	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,34:32:72:0.472:2	./.	./.	./.	0/1:62,29:33:91:0.319:2	./.	./.
chr4	187541131	rs35389971	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,25:32:52:0.481:2	./.
chr4	187541206	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,6:32:51:0.118:2	./.	./.	./.	./.	./.	./.
chr4	187541892	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,4:32:102:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr4	187542755	rs28489116	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,60:33:112:0.536:2	./.
chr4	187542899	rs183343406	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,9:31:13:0.692:2	0/1:8,4:33:12:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	187557893	rs328418	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,47:28:129:0.364:2	0/1:31,30:29:61:0.492:2	0/1:0,16:28:16:1.00:2	0/1:70,56:30:127:0.444:2	0/1:58,59:29:118:0.504:2	./.	0/1:73,57:29:130:0.438:2	0/1:2,121:29:123:0.984:2	0/1:0,125:30:125:1.00:2	0/1:41,56:29:97:0.577:2	0/1:1,119:29:120:0.992:2
chr4	187557962	rs142805532	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:34:15:0.533:2	./.	./.	./.	./.	./.	0/1:49,40:33:89:0.449:2	./.	./.
chr4	187560939	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:32:108:0.037:2	./.
chr4	187584587	rs77280820	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,83:30:167:0.497:2
chr4	187627792	rs11939575	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:30:90:1.00:2	0/1:0,62:30:62:1.00:2	0/1:10,15:31:25:0.600:2	0/1:63,59:30:122:0.484:2	0/1:98,64:30:162:0.395:2	0/1:1,114:30:115:0.991:2	0/1:1,110:31:111:0.991:2	0/1:2,124:30:126:0.984:2	0/1:0,121:31:121:1.00:2	0/1:1,97:31:98:0.990:2	0/1:1,116:31:117:0.991:2
chr4	187628054	rs114279527	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,8:30:13:0.615:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	187628398	rs1877731	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,75:33:75:1.00:2	0/1:0,54:32:54:1.00:2	./.	0/1:70,46:33:116:0.397:2	0/1:68,37:32:105:0.352:2	0/1:0,108:33:108:1.00:2	0/1:0,138:33:138:1.00:2	0/1:2,123:33:125:0.984:2	0/1:0,113:34:113:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,95:33:95:1.00:2
chr4	187629137	rs4862726	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,9:31:16:0.563:2	./.	./.	./.	./.	./.	./.
chr4	187629140	rs367863	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,32:32:32:1.00:2	0/1:0,18:32:18:1.00:2	./.	0/1:8,12:33:20:0.600:2	0/1:10,7:31:17:0.412:2	0/1:0,25:32:25:1.00:2	0/1:1,26:33:27:0.963:2	0/1:2,26:32:28:0.929:2	0/1:0,32:34:32:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,42:32:42:1.00:2
chr4	187629497	rs458021	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,46:31:46:1.00:2	0/1:1,42:32:43:0.977:2	./.	./.	0/1:41,34:30:75:0.453:2	0/1:1,50:30:51:0.980:2	0/1:0,54:32:54:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,57:32:57:1.00:2	0/1:23,21:32:44:0.477:2	0/1:0,57:31:57:1.00:2
chr4	187629538	rs3733413	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,39:31:40:0.975:2	0/1:1,32:31:33:0.970:2	./.	./.	0/1:34,27:28:61:0.443:2	0/1:0,54:30:54:1.00:2	0/1:1,30:31:31:0.968:2	0/1:0,61:30:61:1.00:2	0/1:0,40:31:40:1.00:2	0/1:21,20:32:41:0.488:2	0/1:1,57:31:58:0.983:2
chr4	187629770	rs3733414	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,21:31:21:1.00:2	0/1:1,18:32:19:0.947:2	./.	./.	0/1:12,6:33:18:0.333:2	0/1:0,26:33:26:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,33:32:33:1.00:2	0/1:22,12:33:34:0.353:2	0/1:0,25:30:25:1.00:2
chr4	187630590	rs3733415	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,36:30:80:0.450:2	./.	./.	./.	./.	./.	0/1:36,27:30:64:0.429:2	./.
chr4	187630597	rs41278611	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	187630926	rs200192750	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,20:32:49:0.408:2	0/1:11,18:32:29:0.621:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	188924450	rs61731386	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,11:30:23:0.478:2	0/1:6,5:28:11:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	188924940	rs79135462	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,30:28:70:0.429:2
chr4	188924979	rs6815391	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,40:32:76:0.526:2	0/1:39,36:33:75:0.480:2	./.	0/1:45,34:32:79:0.430:2
chr4	188925449	rs6553124	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.
chr4	188925815	rs7665254	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,8:30:36:0.222:2	./.	0/1:1,24:31:25:0.960:2	0/1:13,12:30:25:0.480:2	0/1:22,12:31:34:0.353:2	./.	./.
chr4	188926147	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,47:33:83:0.566:2	0/1:30,19:32:49:0.388:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	189012680	rs17881718	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,27:32:79:0.342:2	0/1:0,39:32:39:1.00:2	./.	./.	./.	./.	./.	0/1:70,36:33:106:0.340:2
chr4	189012728	rs2279550	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,39:32:63:0.619:2	0/1:20,16:31:36:0.444:2	0/1:0,13:33:13:1.00:2	0/1:47,19:33:66:0.288:2	0/1:0,31:32:31:1.00:2	0/1:49,32:32:82:0.395:2	0/1:0,53:31:53:1.00:2	./.	./.	0/1:0,47:31:47:1.00:2	0/1:56,23:32:79:0.291:2
chr4	189012809	rs2279551	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,18:31:50:0.360:2	./.	./.	./.	./.
chr4	189018486	rs17883789	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,17:33:33:0.515:2	0/1:8,13:32:21:0.619:2	./.	./.	./.	0/1:18,22:32:40:0.550:2	0/1:13,11:32:24:0.458:2	./.	./.	0/1:17,22:33:40:0.564:2	./.
chr4	189020293	rs11736108	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,17:31:65:0.262:2	./.
chr4	189060739	rs140844112	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,44:31:95:0.463:2	./.	./.	./.	./.	./.	./.	./.
chr4	189061010	rs111308948	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,13:27:21:0.619:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	189061024	rs73023226	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,24:30:76:0.320:2
chr4	189061036	rs76826594	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,12:31:23:0.522:2	0/1:0,163:31:163:1.00:2	0/1:95,96:31:191:0.503:2	./.	./.	0/1:105,86:30:191:0.450:2	./.	./.	0/1:37,56:31:93:0.602:2
chr4	189061106	rs13131525	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:61,90:31:151:0.596:2	0/1:44,42:31:86:0.488:2	./.	./.	0/1:97,87:30:184:0.473:2	./.	0/1:2,172:31:174:0.989:2	0/1:95,100:30:195:0.513:2	0/1:113,80:31:193:0.415:2	0/1:97,97:30:194:0.500:2	./.
chr4	189064952	rs28463290	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:36,28:32:64:0.438:2	0/1:28,24:33:52:0.462:2	./.	./.	0/1:40,27:32:67:0.403:2	./.	0/1:0,106:33:106:1.00:2	0/1:55,50:32:105:0.476:2	0/1:56,50:34:106:0.472:2	0/1:0,83:33:83:1.00:2	./.
chr4	189064988	rs11940071	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:33:9:0.667:2	./.	./.	./.	./.	./.	./.	./.	0/1:77,40:32:117:0.342:2
chr4	190862155	rs4145515	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:40,35:31:75:0.467:2	0/1:17,23:33:40:0.575:2	./.	0/1:83,52:32:135:0.385:2	./.	./.	0/1:88,66:33:154:0.429:2	0/1:71,65:32:136:0.478:2	./.	./.	0/1:61,42:30:103:0.408:2
chr4	190862182	rs2411530	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:48,30:31:78:0.385:2	0/1:19,23:32:42:0.548:2	./.	0/1:90,64:31:154:0.416:2	./.	./.	0/1:117,82:32:199:0.412:2	0/1:79,85:31:164:0.518:2	./.	./.	0/1:71,54:31:125:0.432:2
chr4	190864371	rs73024915	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,5:32:94:0.053:2	0/1:61,5:31:66:0.076:2	./.	0/1:62,5:32:67:0.075:2	./.	0/1:86,6:33:92:0.065:2	0/1:92,15:32:107:0.140:2	0/1:128,10:33:138:0.072:2
chr4	190864384	rs200731418	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,6:32:118:0.051:2	./.	./.	./.	0/1:101,5:33:106:0.047:2	./.
chr4	190864424	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:33:164:0.024:2	./.
chr4	190873379	rs112612436	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,6:32:101:0.059:2	0/1:64,4:33:68:0.059:2	./.	./.	./.	./.	0/1:63,6:33:69:0.087:2	0/1:99,8:32:107:0.075:2
chr4	190874206	rs199733955	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:151,4:34:155:0.026:2	./.	0/1:38,10:31:48:0.208:2	0/1:158,22:31:180:0.122:2	0/1:154,13:32:168:0.078:2	0/1:152,15:30:167:0.090:2	0/1:160,10:32:170:0.059:2	./.	0/1:152,16:33:168:0.095:2	0/1:149,15:32:164:0.091:2	0/1:167,10:33:177:0.056:2
chr4	190874231	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,5:29:169:0.030:2	./.	./.	./.
chr4	190874234	rs200620299	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:121,16:33:137:0.117:2	0/1:140,12:32:152:0.079:2	0/1:47,17:32:64:0.266:2	0/1:127,35:32:162:0.216:2	0/1:139,22:32:161:0.137:2	0/1:138,25:32:163:0.153:2	0/1:153,17:33:170:0.100:2	0/1:136,23:32:159:0.145:2	0/1:115,37:34:152:0.243:2	0/1:117,32:33:149:0.215:2	0/1:135,37:32:172:0.215:2
chr4	190874255	rs17425201	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:99,13:33:112:0.116:2	0/1:110,13:32:123:0.106:2	0/1:52,4:32:56:0.071:2	0/1:134,9:31:143:0.063:2	0/1:134,14:32:148:0.095:2	0/1:126,14:30:140:0.100:2	0/1:107,20:32:127:0.157:2	0/1:132,15:30:147:0.102:2	0/1:145,6:34:151:0.040:2	0/1:136,11:33:147:0.075:2	0/1:160,12:32:173:0.070:2
chr4	190874256	rs201275486	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:89,18:32:107:0.168:2	0/1:74,40:32:114:0.351:2	0/1:38,11:32:49:0.224:2	0/1:104,30:31:134:0.224:2	0/1:95,36:32:132:0.275:2	0/1:100,31:31:131:0.237:2	0/1:94,27:32:121:0.223:2	0/1:108,32:32:140:0.229:2	0/1:106,38:32:144:0.264:2	0/1:116,22:32:138:0.159:2	0/1:124,38:32:162:0.235:2
chr4	190874260	rs150856241	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,4:32:48:0.083:2	./.	./.	./.	./.	./.	./.	./.	./.
chr4	190874269	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:116,4:32:120:0.033:2	./.	./.	./.	./.	./.	0/1:172,5:33:177:0.028:2
chr4	190874281	.	G	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:119,12:33:131:0.092:2	0/1:81,21:32:102:0.206:2	0/1:40,5:31:45:0.111:2	0/1:144,19:32:163:0.117:2	0/1:110,18:31:128:0.141:2	0/1:135,22:31:157:0.140:2	0/1:105,11:32:116:0.095:2	0/1:133,19:31:153:0.125:2	0/1:130,21:32:151:0.139:2	0/1:141,15:32:156:0.096:2	0/1:162,16:32:178:0.090:2
chr4	190874290	rs111797658	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:108,23:33:131:0.176:2	0/1:90,10:33:100:0.100:2	0/1:38,3:32:41:0.073:2	0/1:137,23:32:160:0.144:2	0/1:112,15:33:127:0.118:2	0/1:130,23:32:153:0.150:2	0/1:98,18:32:116:0.155:2	0/1:132,18:32:150:0.120:2	0/1:142,6:32:148:0.041:2	0/1:144,12:33:156:0.077:2	0/1:157,18:33:175:0.103:2
chr4	190876192	rs200322789	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,5:24:61:0.082:2
chr4	190876195	rs7684300	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,23:30:49:0.469:2	0/1:20,24:32:44:0.545:2	./.	0/1:48,30:31:78:0.385:2	0/1:51,11:31:62:0.177:2	0/1:45,16:30:61:0.262:2	0/1:13,26:31:39:0.667:2	0/1:41,39:32:80:0.488:2	0/1:66,12:32:78:0.154:2	0/1:58,9:29:67:0.134:2	0/1:27,33:30:60:0.550:2
chr4	190876204	rs3207892	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,25:31:73:0.347:2	0/1:42,16:31:58:0.276:2	0/1:6,3:31:9:0.333:2	0/1:76,19:31:95:0.200:2	0/1:58,18:30:76:0.237:2	0/1:52,30:30:83:0.366:2	0/1:42,10:30:52:0.192:2	0/1:75,36:30:111:0.324:2	0/1:75,27:32:102:0.265:2	0/1:71,21:30:92:0.228:2	0/1:54,45:29:99:0.455:2
chr4	190876210	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,8:33:125:0.064:2	./.
chr4	190876242	rs1061653	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:68,86:31:154:0.558:2	0/1:49,59:32:108:0.546:2	0/1:6,20:31:26:0.769:2	0/1:75,77:31:152:0.507:2	0/1:76,105:31:181:0.580:2	0/1:62,91:31:154:0.595:2	0/1:71,93:31:165:0.567:2	0/1:61,95:31:156:0.609:2	0/1:79,68:32:147:0.463:2	0/1:73,81:31:154:0.526:2	0/1:40,88:31:128:0.688:2
chr4	190876256	rs140599307	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,5:32:153:0.033:2	./.	0/1:152,6:31:158:0.038:2	./.	./.	./.	./.	./.
chr4	190876263	.	A	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:149,9:31:158:0.057:2	0/1:129,4:32:133:0.030:2	0/1:30,6:30:36:0.167:2	0/1:148,6:31:154:0.039:2	0/1:176,7:31:183:0.038:2	0/1:153,6:31:159:0.038:2	0/1:154,17:31:171:0.099:2	0/1:160,7:30:167:0.042:2	0/1:145,6:33:152:0.040:2	0/1:146,11:32:157:0.070:2	0/1:139,5:32:144:0.035:2
chr4	190876269	rs149113074	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:153,9:33:162:0.056:2	0/1:128,9:32:137:0.066:2	0/1:35,5:33:40:0.125:2	0/1:144,15:32:159:0.094:2	0/1:177,10:31:187:0.053:2	0/1:153,7:33:160:0.044:2	0/1:156,15:32:171:0.088:2	0/1:154,11:31:166:0.067:2	0/1:151,5:32:156:0.032:2	0/1:148,7:32:155:0.045:2	0/1:137,9:33:146:0.062:2
chr4	190876277	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,8:31:167:0.048:2	./.	0/1:145,7:30:152:0.046:2	./.
chr4	190876278	rs199978807	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:136,5:33:141:0.035:2	./.	0/1:141,9:32:150:0.060:2	./.	./.	0/1:169,4:33:173:0.023:2	./.	./.	./.	0/1:145,5:34:150:0.033:2
chr4	190876283	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,7:31:158:0.044:2	./.	./.	./.	./.	./.
chr4	190876293	rs201142987	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:150,6:34:156:0.038:2	0/1:126,5:33:131:0.038:2	./.	0/1:129,9:32:138:0.065:2	./.	0/1:135,4:31:139:0.029:2	0/1:153,4:32:157:0.025:2	./.	./.	./.	0/1:148,6:34:154:0.039:2
chr4	190878551	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:183,4:35:187:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr4	190878552	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:173,4:33:177:0.023:2	0/1:165,7:32:172:0.041:2	./.	./.	./.	0/1:169,4:33:173:0.023:2	./.	./.
chr4	190878562	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,4:30:42:0.095:2	./.	./.	./.	./.	./.	./.	0/1:172,8:32:180:0.044:2	0/1:169,6:32:175:0.034:2
chr4	190878563	rs137858630	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:159,26:31:185:0.141:2	0/1:126,27:32:153:0.176:2	0/1:34,10:30:44:0.227:2	0/1:165,21:31:186:0.113:2	0/1:173,16:30:189:0.085:2	0/1:167,23:31:190:0.121:2	0/1:146,22:31:168:0.131:2	0/1:166,20:30:186:0.108:2	0/1:165,19:33:184:0.103:2	0/1:163,23:31:186:0.124:2	0/1:159,17:32:176:0.097:2
chr4	190878577	rs200267221	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:174,12:34:186:0.065:2	0/1:174,6:33:180:0.033:2	./.	0/1:181,9:32:190:0.047:2	0/1:182,7:32:189:0.037:2	0/1:184,6:32:190:0.032:2	0/1:171,12:30:183:0.066:2	0/1:172,14:34:186:0.075:2	0/1:179,4:35:183:0.022:2	0/1:181,5:33:186:0.027:2	0/1:168,14:34:182:0.077:2
chr4	190878580	rs189762674	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:32:182:0.022:2	./.	./.	./.	./.
chr4	190878589	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,6:33:190:0.032:2	./.	./.	0/1:178,8:31:186:0.043:2
chr4	190878596	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:180,6:32:186:0.032:2	./.	./.	0/1:181,8:30:189:0.042:2	0/1:182,6:29:188:0.032:2	0/1:175,9:31:184:0.049:2	0/1:184,7:31:191:0.037:2	./.	./.	./.
chr4	190878597	rs62345290	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:110,85:31:195:0.436:2	0/1:95,91:31:186:0.489:2	0/1:36,25:31:61:0.410:2	0/1:112,80:31:192:0.417:2	0/1:108,81:30:189:0.429:2	0/1:120,71:31:191:0.372:2	0/1:104,78:31:182:0.429:2	0/1:98,92:31:190:0.484:2	0/1:114,74:31:188:0.394:2	0/1:114,77:31:193:0.403:2	0/1:94,92:31:186:0.495:2
chr4	190878599	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:192,4:32:196:0.020:2	0/1:181,6:32:187:0.032:2	./.	./.	0/1:184,5:31:189:0.026:2	0/1:187,5:32:192:0.026:2	./.	0/1:188,4:33:192:0.021:2	./.	./.	./.
chr4	190878608	.	G	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:187,6:31:193:0.031:2	0/1:183,7:33:190:0.037:2	0/1:72,4:32:76:0.053:2	0/1:188,6:35:194:0.031:2	./.	0/1:183,8:32:191:0.042:2	0/1:178,9:32:187:0.048:2	0/1:186,7:34:193:0.036:2	0/1:188,5:34:193:0.026:2	0/1:182,10:33:192:0.052:2	0/1:176,10:35:187:0.054:2
chr4	190878614	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:33:188:0.021:2	./.	./.	./.	./.
chr4	190878622	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,7:31:192:0.036:2	./.	./.	./.	./.	./.
chr4	190878626	.	G	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:180,11:32:191:0.058:2	0/1:177,12:32:189:0.063:2	0/1:76,6:32:82:0.073:2	0/1:188,7:31:195:0.036:2	0/1:177,7:32:184:0.038:2	./.	0/1:182,7:31:189:0.037:2	./.	0/1:186,5:34:191:0.026:2	0/1:183,10:31:194:0.052:2	0/1:188,4:33:192:0.021:2
chr4	190878646	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,7:32:186:0.038:2	./.	./.
chr4	190878654	rs78653319	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:134,50:33:184:0.272:2	0/1:109,41:33:150:0.273:2	0/1:46,22:33:68:0.324:2	0/1:144,40:32:184:0.217:2	0/1:128,37:31:165:0.224:2	0/1:141,45:32:186:0.242:2	0/1:125,26:32:151:0.172:2	0/1:142,44:33:186:0.237:2	0/1:131,46:33:177:0.260:2	0/1:129,51:33:180:0.283:2	0/1:148,32:33:180:0.178:2
chr4	190881927	rs199529914	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:171,11:34:182:0.060:2	0/1:101,18:32:119:0.151:2	0/1:71,16:32:87:0.184:2	0/1:159,27:32:186:0.145:2	0/1:135,7:33:142:0.049:2	0/1:164,24:32:188:0.128:2	0/1:117,9:33:126:0.071:2	0/1:158,28:32:186:0.151:2	0/1:164,13:34:177:0.073:2	0/1:160,22:32:182:0.121:2	0/1:149,23:32:174:0.134:2
chr4	190881931	.	A	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:179,7:29:186:0.038:2	0/1:114,8:29:122:0.066:2	0/1:79,7:29:86:0.081:2	0/1:176,11:30:187:0.059:2	0/1:139,8:28:147:0.054:2	0/1:175,14:28:189:0.074:2	0/1:122,8:30:130:0.062:2	0/1:179,9:29:188:0.048:2	0/1:171,6:30:177:0.034:2	0/1:172,10:30:182:0.055:2	./.
chr4	190881949	rs4632111	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:180,8:30:188:0.043:2	0/1:140,7:32:147:0.048:2	0/1:70,5:31:75:0.067:2	0/1:182,9:32:191:0.047:2	0/1:166,8:28:174:0.046:2	0/1:176,13:31:189:0.069:2	0/1:158,7:32:165:0.042:2	0/1:183,7:30:190:0.037:2	0/1:177,5:32:182:0.027:2	0/1:175,9:32:184:0.049:2	./.
chr4	190881956	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:144,5:31:149:0.034:2	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.	./.	./.	./.
chr4	190881957	.	G	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:181,6:31:187:0.032:2	0/1:145,5:32:150:0.033:2	./.	./.	./.	0/1:183,5:29:188:0.027:2	0/1:168,5:31:173:0.029:2	./.	0/1:171,11:31:183:0.060:2	0/1:170,13:31:183:0.071:2	0/1:169,5:32:174:0.029:2
chr4	190881971	.	A	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:182,6:33:188:0.032:2	./.	./.	0/1:182,4:33:186:0.022:2	./.	./.	./.	0/1:178,11:32:189:0.058:2	0/1:179,6:32:185:0.032:2	0/1:179,4:33:183:0.022:2	./.
chr4	190881978	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:172,13:33:185:0.070:2	./.	0/1:179,9:32:188:0.048:2	./.	0/1:173,16:31:189:0.085:2	./.	0/1:171,9:32:181:0.050:2	0/1:160,10:30:170:0.059:2
chr4	190881979	rs201496065	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:170,14:31:184:0.076:2	./.	0/1:178,10:30:188:0.053:2	./.	0/1:171,18:30:189:0.095:2	0/1:182,7:31:189:0.037:2	0/1:172,11:31:183:0.060:2	0/1:155,14:31:169:0.083:2
chr4	190882998	rs75590332	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,6:30:55:0.109:2	./.	./.	0/1:45,5:32:50:0.100:2	./.	./.	0/1:90,6:34:96:0.063:2	0/1:99,9:33:108:0.083:2
chr4	190883007	rs201978002	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,3:33:51:0.059:2	./.	0/1:46,5:34:51:0.098:2	0/1:54,4:33:58:0.069:2	0/1:60,4:35:64:0.063:2	./.	./.
chr4	190883020	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,4:32:47:0.085:2	./.	./.	./.	./.	./.	./.	./.
chr4	190883051	rs1803593	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:53,4:33:57:0.070:2	./.	./.	0/1:38,5:33:44:0.116:2	0/1:30,13:32:43:0.302:2	0/1:48,5:32:53:0.094:2	0/1:35,14:31:49:0.286:2	0/1:43,11:32:54:0.204:2	0/1:54,12:33:66:0.182:2	0/1:59,21:32:80:0.263:2	0/1:82,9:32:91:0.099:2
chr4	190883070	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:30:79:0.051:2	./.
chr4	190883075	rs199625825	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,5:32:70:0.071:2	./.
chr4	190884234	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,5:27:59:0.085:2
chr4	190884247	rs201129893	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,3:34:47:0.064:2	./.	0/1:70,4:33:74:0.054:2
chr4	190884313	rs79166535	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,4:32:22:0.182:2	./.	./.	./.	0/1:70,4:31:74:0.054:2
chr4	190903677	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,4:26:25:0.160:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	190903678	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,4:32:25:0.160:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	190903682	rs370492949	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:33:75:0.055:2	./.	./.	./.	./.	0/1:30,4:33:34:0.118:2
chr4	190903688	rs2077107	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:19,9:29:28:0.321:2	0/1:9,6:32:15:0.400:2	./.	0/1:25,10:31:35:0.286:2	./.	./.	0/1:36,26:30:62:0.419:2	0/1:21,29:30:50:0.580:2	./.	./.	0/1:16,19:30:35:0.543:2
chr4	190903734	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:35,5:35:40:0.125:2	./.	./.	./.	0/1:77,5:34:82:0.061:2	0/1:74,4:33:78:0.051:2	0/1:56,3:35:59:0.051:2	./.	./.	./.	0/1:35,7:34:42:0.167:2
chr4	190903759	rs201249383	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:38,4:29:42:0.095:2	./.	./.	./.	0/1:69,4:29:73:0.055:2	0/1:75,5:28:80:0.063:2	./.	./.	./.	./.	0/1:35,5:24:40:0.125:2
chr4	190903815	rs17799221	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:32:68:0.059:2
chr4	190903823	rs375644174	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,5:31:70:0.071:2
chr4	190903880	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:68,5:29:73:0.068:2	./.	./.	./.	0/1:102,4:30:106:0.038:2	./.	./.	./.	./.	./.	./.
chr4	190903889	rs140140663	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:64,9:32:73:0.123:2	0/1:37,3:33:40:0.075:2	./.	./.	0/1:89,6:31:95:0.063:2	0/1:114,5:32:119:0.042:2	./.	./.	./.	./.	./.
chr4	190903938	rs2898750	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:59,18:32:78:0.234:2	0/1:29,9:31:38:0.237:2	./.	0/1:36,29:31:65:0.446:2	./.	./.	0/1:93,9:31:102:0.088:2	0/1:70,22:32:92:0.239:2	./.	./.	0/1:70,39:32:109:0.358:2
chr4	190903950	rs2411551	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:62,13:32:75:0.173:2	0/1:30,5:32:35:0.143:2	./.	0/1:36,24:31:60:0.400:2	./.	./.	0/1:94,7:31:101:0.069:2	0/1:73,19:33:92:0.207:2	./.	./.	0/1:72,32:32:104:0.308:2
chr4	190904030	rs375992117	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:27:14:0.286:2	./.	./.	./.	0/1:18,7:29:26:0.280:2	./.	./.	./.
chr4	190904031	rs4080710	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,3:29:14:0.214:2	./.	./.	./.	0/1:20,7:27:27:0.259:2	./.	./.	./.
chr4	190904058	rs3959347	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,4:32:16:0.250:2	./.	./.	0/1:24,3:30:27:0.111:2	./.	./.	./.	0/1:28,3:30:31:0.097:2
chr4	190904076	rs4618356	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,3:30:30:0.100:2	./.	./.	./.	./.	./.
chr4	190904116	rs199880699	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,11:31:29:0.379:2
chr4	190904140	rs201215409	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,6:32:27:0.222:2
chr4	190904156	rs4277824	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,5:31:21:0.238:2
chr4	190904382	rs74346489	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,42:27:62:0.677:2	./.	./.	./.	./.
chr4	190904383	rs76146840	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,10:31:80:0.125:2	./.	0/1:13,6:31:19:0.316:2	0/1:99,5:31:104:0.048:2	./.	./.	0/1:58,6:32:64:0.094:2	./.	./.	./.	0/1:79,7:29:86:0.081:2
chr4	190904395	rs200255533	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,4:31:113:0.035:2	0/1:144,4:33:148:0.027:2	./.	0/1:95,4:31:99:0.040:2	./.	./.	./.
chr4	190904414	rs199957254	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:137,6:30:143:0.042:2	./.	./.	./.	./.	./.	0/1:110,8:32:118:0.068:2
chr4	190904448	rs201081338	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,7:32:188:0.037:2	./.	./.	./.
chr4	190904449	rs201642507	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:119,4:32:123:0.033:2	./.	./.	./.	./.	0/1:188,5:28:193:0.026:2	./.	0/1:182,8:28:190:0.042:2	./.	./.	./.
chr4	190904494	rs78829952	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,10:34:194:0.052:2	./.	./.	./.
chr4	190904596	rs201527476	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:31:74:0.054:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	190904638	rs202001856	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:73,12:31:85:0.141:2	0/1:49,8:31:57:0.140:2	./.	./.	./.	./.	./.	./.	./.	0/1:149,17:30:166:0.102:2	./.
chr4	190904645	rs9995127	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:80,13:32:93:0.140:2	0/1:57,4:32:61:0.066:2	./.	0/1:89,11:32:100:0.110:2	./.	./.	0/1:94,15:31:109:0.138:2	0/1:87,14:31:101:0.139:2	./.	./.	0/1:64,10:32:76:0.135:2
chr4	190904669	rs201403829	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:69,10:32:79:0.127:2	0/1:51,10:30:61:0.164:2	./.	./.	./.	./.	./.	./.	./.	0/1:149,20:31:170:0.118:2	./.
chr4	190904676	rs199592926	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:66,10:30:76:0.132:2	0/1:52,10:29:62:0.161:2	./.	./.	./.	./.	./.	./.	./.	0/1:146,21:29:167:0.126:2	./.
chr4	190905462	rs183089947	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,5:32:35:0.143:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	190905506	rs9884710	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:8,6:30:14:0.429:2	./.	./.	0/1:7,3:26:10:0.300:2	./.	./.	0/1:0,5:32:5:1.00:2	./.	./.	./.	./.
chr4	190905617	rs200677776	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,5:29:10:0.500:2
chr4	190905637	rs201190714	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:8,4:30:12:0.333:2	./.	./.	./.	./.	0/1:27,4:24:31:0.129:2	0/1:22,11:30:33:0.333:2	./.	./.	./.
chr4	190905645	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,11:29:34:0.324:2	./.	./.	./.
chr4	190905961	rs200214940	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,8:31:39:0.205:2	./.
chr4	190905976	rs76536163	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:16,13:30:29:0.448:2	0/1:24,11:31:35:0.314:2	0/1:5,4:32:9:0.444:2	./.	0/1:25,8:29:33:0.242:2	0/1:45,11:31:56:0.196:2	0/1:26,7:32:33:0.212:2	0/1:58,14:32:72:0.194:2	./.	0/1:45,20:31:65:0.308:2	0/1:11,9:29:20:0.450:2
chr4	190906025	rs66954538	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:29,26:32:55:0.473:2	0/1:31,33:31:64:0.516:2	0/1:10,12:31:22:0.545:2	./.	0/1:88,22:30:110:0.200:2	0/1:65,44:31:109:0.404:2	0/1:50,33:30:83:0.398:2	0/1:37,92:31:129:0.713:2	0/1:57,40:32:97:0.412:2	0/1:94,60:31:154:0.390:2	0/1:18,24:31:42:0.571:2
chr4	190946718	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:32:86:0.047:2	0/1:103,4:32:107:0.037:2	./.	./.	0/1:83,5:26:88:0.057:2	./.
chr4	190946748	.	T	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:74,10:29:84:0.119:2	0/1:40,4:25:44:0.091:2	./.	0/1:94,15:32:109:0.138:2	0/1:106,7:32:113:0.062:2	0/1:100,26:32:126:0.206:2	0/1:133,23:31:156:0.147:2	0/1:129,17:32:146:0.116:2	0/1:86,16:30:102:0.157:2	0/1:98,18:32:116:0.155:2	0/1:83,14:31:97:0.144:2
chr4	190946795	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,15:31:170:0.088:2	./.	./.
chr4	190946812	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	0/1:186,5:32:191:0.026:2	./.	./.	./.	./.	./.
chr4	190946823	rs199578054	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,21:29:188:0.112:2
chr4	190946866	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:152,34:32:186:0.183:2	0/1:75,21:32:96:0.219:2	0/1:21,8:32:29:0.276:2	0/1:127,38:32:166:0.230:2	0/1:140,26:32:166:0.157:2	0/1:126,37:31:163:0.227:2	0/1:123,34:32:157:0.217:2	0/1:123,34:32:157:0.217:2	0/1:139,33:32:172:0.192:2	0/1:133,41:33:174:0.236:2	0/1:138,37:32:175:0.211:2
chr4	190946919	.	G	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:131,9:33:140:0.064:2	0/1:60,8:31:68:0.118:2	./.	0/1:117,7:31:125:0.056:2	0/1:98,12:31:110:0.109:2	0/1:121,16:30:137:0.117:2	0/1:119,15:31:136:0.112:2	0/1:128,9:31:137:0.066:2	./.	0/1:107,13:33:120:0.108:2	0/1:91,10:29:101:0.099:2
chr4	190946923	.	G	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:120,12:31:132:0.091:2	0/1:63,7:33:70:0.100:2	./.	0/1:95,6:31:101:0.059:2	0/1:102,4:30:106:0.038:2	0/1:106,13:29:119:0.109:2	0/1:117,10:31:127:0.079:2	0/1:119,13:30:132:0.098:2	0/1:106,6:31:112:0.054:2	0/1:108,8:32:116:0.069:2	0/1:88,10:31:98:0.102:2
chr4	190946947	.	A	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:102,8:32:110:0.073:2	0/1:54,6:32:60:0.100:2	./.	0/1:88,6:32:94:0.064:2	./.	0/1:102,9:32:111:0.081:2	0/1:108,7:27:115:0.061:2	0/1:112,7:32:119:0.059:2	./.	0/1:92,8:32:100:0.080:2	0/1:83,8:32:91:0.088:2
chr4	190946949	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:32:111:0.036:2	./.	./.	./.	0/1:92,4:31:96:0.042:2	./.
chr4	190947558	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,5:28:170:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr4	190947570	rs201749501	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:149,7:31:157:0.045:2	0/1:173,6:32:179:0.034:2	0/1:61,4:33:65:0.062:2	0/1:173,7:32:180:0.039:2	0/1:170,6:33:176:0.034:2	0/1:177,7:31:185:0.038:2	0/1:187,7:32:194:0.036:2	0/1:172,8:32:180:0.044:2	./.	./.	0/1:164,8:31:174:0.047:2
chr4	190947582	rs201879157	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:32:186:0.022:2	./.	./.	./.
chr4	190947852	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:170,5:33:175:0.029:2	0/1:133,18:32:151:0.119:2	./.	./.	0/1:169,10:30:179:0.056:2	0/1:173,6:32:179:0.034:2	./.	0/1:154,13:31:167:0.078:2	0/1:162,16:33:178:0.090:2	0/1:166,8:27:174:0.046:2	0/1:162,5:31:167:0.030:2
chr4	190947859	.	G	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:159,12:32:171:0.070:2	0/1:149,5:32:154:0.032:2	0/1:33,4:26:38:0.108:2	0/1:167,13:31:180:0.072:2	0/1:165,10:30:175:0.057:2	0/1:162,12:29:174:0.069:2	0/1:168,5:33:173:0.029:2	0/1:153,7:32:160:0.044:2	0/1:163,6:32:169:0.036:2	0/1:162,14:30:176:0.080:2	0/1:155,8:32:163:0.049:2
chr4	190947883	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,15:33:144:0.104:2	./.	./.	0/1:134,7:31:141:0.050:2	0/1:144,4:32:148:0.027:2	./.	0/1:127,10:32:137:0.073:2	0/1:134,6:33:140:0.043:2	0/1:151,5:32:156:0.032:2	0/1:133,5:33:138:0.036:2
chr4	190947916	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,13:32:77:0.169:2	0/1:94,22:33:116:0.190:2	0/1:19,5:30:24:0.208:2	0/1:69,24:32:93:0.258:2	0/1:66,20:31:86:0.233:2	0/1:59,37:32:96:0.385:2	0/1:92,13:32:105:0.124:2	0/1:97,19:32:116:0.164:2	0/1:62,31:33:93:0.333:2	0/1:88,20:33:108:0.185:2	0/1:76,30:32:106:0.283:2
chr4	190947917	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:32:94:0.043:2	./.	./.	0/1:92,3:36:95:0.032:2	0/1:99,8:31:107:0.075:2	./.
chr4	190947930	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:77,8:32:85:0.094:2	0/1:13,3:32:16:0.188:2	0/1:77,8:31:85:0.094:2	./.	0/1:80,6:28:86:0.070:2	./.	0/1:94,9:31:103:0.087:2	0/1:82,3:35:85:0.035:2	0/1:82,4:31:86:0.047:2	0/1:97,6:29:103:0.058:2
chr5	140532	rs12516846	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,21:32:56:0.375:2	./.	./.	0/1:19,15:32:34:0.441:2	./.	./.	./.	./.
chr5	140636	rs12523402	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,29:30:70:0.414:2	./.	./.	0/1:48,45:31:93:0.484:2	./.	./.	./.	./.
chr5	140788	rs12516245	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,7:32:15:0.467:2	./.	./.	0/1:15,14:31:29:0.483:2	./.	./.	./.	./.
chr5	143197	rs11949577	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,52:32:101:0.515:2	./.	./.	0/1:29,44:30:73:0.603:2	./.	./.	./.	./.
chr5	143534	rs13436090	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,39:30:79:0.494:2	./.	./.	0/1:49,51:30:100:0.510:2	./.	./.	./.	./.
chr5	156287	rs6554830	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,38:31:73:0.521:2	./.	./.	0/1:47,34:30:81:0.420:2	./.	./.	./.	./.
chr5	163205	rs3810870	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,63:32:63:1.00:2	0/1:0,30:32:30:1.00:2	./.	0/1:41,22:32:63:0.349:2	0/1:45,32:31:77:0.416:2	./.	0/1:25,17:32:42:0.405:2	0/1:0,79:32:79:1.00:2	0/1:0,66:32:66:1.00:2	./.	0/1:1,40:31:41:0.976:2
chr5	163231	rs377321841	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,36:31:86:0.419:2	./.	./.	./.
chr5	163235	rs146510418	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,16:28:48:0.333:2	./.	./.	./.	./.
chr5	163260	rs29674	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,54:31:54:1.00:2	0/1:1,63:31:64:0.984:2	0/1:1,79:31:80:0.988:2	0/1:0,41:31:42:1.00:2	0/1:0,76:30:77:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,61:30:61:1.00:2	0/1:0,39:29:39:1.00:2
chr5	163266	rs3810867	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,3:35:10:0.300:2	0/1:38,14:32:52:0.269:2	./.	./.	0/1:33,4:28:37:0.108:2	./.	./.	0/1:29,30:31:59:0.508:2	0/1:24,15:28:39:0.385:2
chr5	163496	rs115664303	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,10:30:22:0.455:2	./.
chr5	174106	rs4956987	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:27,18:31:45:0.400:2	0/1:12,11:31:23:0.478:2	0/1:0,9:32:9:1.00:2	./.	0/1:37,23:28:60:0.383:2	0/1:0,61:30:61:1.00:2	./.	0/1:57,34:31:91:0.374:2	./.	0/1:0,61:31:62:1.00:2	0/1:0,49:32:49:1.00:2
chr5	181660	rs7717970	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,10:32:10:1.00:2	0/1:28,26:34:54:0.481:2	0/1:29,29:32:58:0.500:2	0/1:0,60:32:60:1.00:2	0/1:37,35:31:73:0.486:2	0/1:34,30:31:65:0.469:2	./.	0/1:0,48:32:48:1.00:2	0/1:0,62:33:62:1.00:2
chr5	181730	rs12519352	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,57:30:57:1.00:2	0/1:1,22:29:23:0.957:2	0/1:0,13:30:13:1.00:2	./.	0/1:53,51:29:104:0.490:2	0/1:0,75:29:75:1.00:2	./.	0/1:52,41:26:93:0.441:2	./.	0/1:0,62:29:62:1.00:2	0/1:0,56:30:56:1.00:2
chr5	181762	rs11133847	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:31:49:1.00:2	0/1:1,21:31:22:0.955:2	0/1:0,10:30:10:1.00:2	0/1:41,45:32:86:0.523:2	0/1:50,34:32:84:0.405:2	0/1:0,74:31:74:1.00:2	0/1:44,40:33:84:0.476:2	0/1:45,35:30:80:0.438:2	./.	0/1:0,51:32:51:1.00:2	0/1:0,36:31:36:1.00:2
chr5	182291	rs11747660	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,26:31:82:0.317:2	./.	./.	0/1:53,29:30:82:0.354:2	./.	./.	./.	./.
chr5	195219	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	195318	rs6886707	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,34:29:60:0.567:2	./.	./.	0/1:32,27:28:59:0.458:2	./.	./.	./.	./.
chr5	205565	rs10060089	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,52:33:118:0.441:2	0/1:64,71:31:135:0.526:2	./.	./.	0/1:3,96:32:99:0.970:2	./.	./.	./.
chr5	205659	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,4:32:62:0.065:2	./.	./.	./.	./.	./.	./.	./.
chr5	223646	rs34635677	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,23:30:40:0.575:2	./.	./.	0/1:110,73:31:183:0.399:2	./.	./.	./.	./.	./.
chr5	223654	rs1061520	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:31:165:0.024:2	./.	./.	./.	./.
chr5	224538	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,6:25:190:0.032:2	./.
chr5	224633	rs1139424	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,49:31:119:0.412:2	0/1:68,42:31:110:0.382:2	./.	./.	0/1:4,108:31:112:0.964:2	./.	./.	./.
chr5	226069	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,18:32:193:0.093:2	0/1:195,4:33:199:0.020:2	./.	./.	./.
chr5	226160	rs6555055	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,55:28:129:0.426:2	0/1:63,59:28:122:0.484:2	./.	./.	0/1:1,127:27:128:0.992:2	./.	./.	./.
chr5	228322	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,4:33:92:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr5	228362	rs2115272	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,48:30:109:0.440:2	0/1:60,39:30:99:0.394:2	./.	./.	0/1:2,118:30:120:0.983:2	./.	./.	./.
chr5	228381	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr5	231111	rs1126417	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,156:33:156:1.00:2	0/1:0,157:32:157:1.00:2	0/1:36,28:33:64:0.438:2	0/1:1,190:33:191:0.995:2	0/1:1,190:32:191:0.995:2	0/1:0,191:32:191:1.00:2	0/1:1,188:32:189:0.995:2	0/1:1,188:32:189:0.995:2	./.	0/1:1,151:33:152:0.993:2	0/1:1,154:32:155:0.994:2
chr5	233665	rs142849100	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,12:30:25:0.480:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	233734	rs1041949	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,70:31:138:0.507:2	0/1:75,71:29:146:0.486:2	./.	./.	0/1:1,123:30:124:0.992:2	./.	./.	./.
chr5	236556	rs200047573	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:186,6:33:192:0.031:2	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2
chr5	236587	rs150831951	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,97:31:181:0.536:2
chr5	236660	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:158,5:28:163:0.031:2	./.	./.	./.	./.	./.	./.	./.	0/1:174,5:32:179:0.028:2	./.	./.
chr5	236678	rs111387770	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:138,13:32:151:0.086:2	./.	./.	./.	./.	./.	./.	0/1:152,6:31:158:0.038:2
chr5	236696	rs143798161	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:115,8:33:123:0.065:2	./.	./.	./.	./.	./.	./.	./.	0/1:131,6:33:137:0.044:2	0/1:130,7:32:137:0.051:2	./.
chr5	240567	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,6:34:135:0.045:2
chr5	251178	rs35502109	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,73:31:189:0.386:2	./.	./.	./.	./.
chr5	251469	rs10039029	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:145,43:32:188:0.229:2	0/1:150,46:33:196:0.235:2	./.	./.	0/1:102,84:32:186:0.452:2	./.	./.	./.
chr5	251503	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:38,5:32:43:0.116:2	0/1:153,5:31:158:0.032:2	./.	./.	./.	./.	./.	0/1:165,5:32:170:0.029:2	./.
chr5	251541	rs77210621	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,73:30:187:0.390:2	0/1:123,67:30:190:0.353:2	./.	./.	0/1:4,187:30:191:0.979:2	./.	./.	./.
chr5	254529	rs17400614	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,4:32:194:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr5	254574	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:58,4:27:62:0.065:2	0/1:189,9:29:198:0.045:2	./.	0/1:191,6:27:197:0.030:2	./.	./.	./.	0/1:186,10:28:196:0.051:2	./.
chr5	254599	rs6960	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,56:32:195:0.287:2	0/1:121,76:31:197:0.386:2	./.	./.	0/1:71,127:31:198:0.641:2	./.	./.	./.
chr5	254609	rs17415225	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,5:28:193:0.026:2	./.
chr5	256455	rs1126697	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,5:28:88:0.057:2
chr5	256472	rs6961	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:69,10:31:79:0.127:2	0/1:62,4:32:66:0.061:2	./.	0/1:59,85:30:144:0.590:2	0/1:38,24:30:62:0.387:2	0/1:118,25:29:143:0.175:2	./.	0/1:0,153:30:153:1.00:2	0/1:137,45:31:182:0.247:2	./.	0/1:94,9:29:103:0.087:2
chr5	256508	rs3211499	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:33:101:0.040:2
chr5	256509	rs6962	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,68:30:146:0.466:2	0/1:48,36:29:84:0.429:2	./.	./.	0/1:27,129:30:156:0.827:2	./.	./.	./.
chr5	256514	rs1042446	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:77,4:35:81:0.049:2	./.	./.	0/1:128,12:33:140:0.086:2	./.	0/1:114,15:32:129:0.116:2	0/1:156,4:33:161:0.025:2	0/1:134,23:33:157:0.146:2	0/1:143,26:33:170:0.154:2	./.	0/1:92,9:28:101:0.089:2
chr5	272891	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,20:31:110:0.182:2	./.	./.	./.
chr5	272906	rs189418336	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,24:29:122:0.197:2	0/1:71,19:30:90:0.211:2	./.	./.	0/1:27,56:30:83:0.675:2	./.	./.	./.
chr5	311478	rs2244029	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,107:28:108:0.991:2	0/1:1,73:29:74:0.986:2	0/1:0,18:28:19:1.00:2	0/1:95,57:28:152:0.375:2	0/1:3,142:29:145:0.979:2	0/1:0,129:28:129:1.00:2	0/1:3,125:28:128:0.977:2	0/1:98,52:28:150:0.347:2	./.	0/1:0,139:29:139:1.00:2	0/1:0,89:28:89:1.00:2
chr5	422955	rs2292596	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,24:31:56:0.429:2	0/1:19,15:31:34:0.441:2	0/1:0,3:34:3:1.00:2	0/1:48,31:31:79:0.392:2	./.	./.	0/1:36,25:32:61:0.410:2	0/1:1,80:32:81:0.988:2	0/1:28,25:32:53:0.472:2	./.	0/1:29,24:32:53:0.453:2
chr5	428044	rs72717408	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,23:34:48:0.479:2	0/1:24,19:31:43:0.442:2	0/1:20,30:32:50:0.600:2
chr5	434722	rs34453673	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,6:33:16:0.375:2	0/1:12,3:32:15:0.200:2	./.	./.	0/1:13,9:30:22:0.409:2	0/1:1,34:31:35:0.971:2	./.	./.	0/1:12,12:31:24:0.500:2	0/1:0,19:31:19:1.00:2	0/1:2,8:30:10:0.800:2
chr5	442586	rs10035612	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:32:18:0.500:2	./.	./.	0/1:10,6:32:16:0.375:2	./.	./.	./.	./.
chr5	442790	rs10035653	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,34:30:103:0.330:2	./.	./.	0/1:71,37:31:108:0.343:2	./.	./.	./.	./.
chr5	443059	rs77101200	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,8:30:15:0.533:2	./.	./.	./.	0/1:8,12:28:20:0.600:2	0/1:0,18:28:18:1.00:2	./.	./.	0/1:6,7:30:13:0.538:2	0/1:0,13:29:13:1.00:2	0/1:3,5:31:8:0.625:2
chr5	443148	rs2721029	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:28:2:1.00:2	0/1:0,5:27:5:1.00:2	./.	0/1:0,11:25:11:1.00:2	./.	0/1:0,5:28:5:1.00:2	0/1:0,5:25:5:1.00:2	0/1:0,8:26:8:1.00:2	./.
chr5	453567	rs2672722	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,40:31:101:0.396:2	0/1:35,30:31:65:0.462:2	0/1:0,13:31:13:1.00:2	0/1:1,106:31:107:0.991:2	./.	./.	0/1:2,118:31:120:0.983:2	0/1:0,124:31:124:1.00:2	0/1:59,50:31:109:0.459:2	./.	0/1:70,49:31:119:0.412:2
chr5	453946	rs201710378	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,6:19:32:0.188:2	0/1:30,6:17:36:0.167:2
chr5	475104	rs2247114	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:30:40:1.00:2	0/1:0,25:29:25:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,83:30:83:1.00:2	0/1:39,18:29:57:0.316:2	0/1:0,55:29:55:1.00:2	0/1:3,57:29:60:0.950:2	0/1:0,82:29:82:1.00:2	0/1:2,39:30:41:0.951:2	0/1:0,40:30:40:1.00:2	0/1:0,27:29:27:1.00:2
chr5	476353	rs2230437	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:26,23:32:49:0.469:2	0/1:18,14:32:32:0.438:2	./.	./.	0/1:26,28:32:54:0.519:2	0/1:0,59:32:59:1.00:2	./.	./.	0/1:24,35:33:59:0.593:2	0/1:2,40:33:42:0.952:2	0/1:25,31:32:56:0.554:2
chr5	477549	rs138322600	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,4:33:95:0.042:2	./.	./.	./.	./.	./.	./.	./.
chr5	482186	rs9885312	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,28:31:30:0.933:2	0/1:0,11:31:11:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,59:31:60:1.00:2	0/1:40,20:28:60:0.333:2	0/1:0,48:31:48:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,25:31:25:1.00:2
chr5	483477	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:33:186:0.022:2	./.	./.
chr5	483564	rs56098739	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,46:31:128:0.359:2	0/1:59,39:30:98:0.398:2	./.	./.	./.	./.	./.	./.	0/1:95,92:31:187:0.492:2	0/1:0,149:30:149:1.00:2	0/1:80,82:30:162:0.506:2
chr5	484731	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:34:129:0.031:2	./.	./.
chr5	485259	rs55989315	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:15,24:31:39:0.615:2	0/1:10,13:33:23:0.565:2	./.	./.	0/1:56,33:30:89:0.371:2	./.	./.	./.	0/1:16,25:32:41:0.610:2	0/1:0,36:30:37:1.00:2	0/1:13,11:31:24:0.458:2
chr5	639231	rs12522955	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,91:30:93:0.978:2	0/1:58,74:30:132:0.561:2	./.	./.	./.	0/1:41,32:30:73:0.438:2	./.
chr5	640705	rs868649	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:23,19:27:42:0.452:2	0/1:15,16:30:31:0.516:2	./.	0/1:37,23:30:60:0.383:2	./.	./.	./.	0/1:29,21:31:50:0.420:2	./.	0/1:24,12:30:36:0.333:2	0/1:20,14:31:34:0.412:2
chr5	653145	rs62000998	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:34:15:0.533:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	665280	rs1697963	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,22:30:50:0.440:2	0/1:21,16:29:37:0.432:2	0/1:6,5:31:11:0.455:2	0/1:0,95:30:95:1.00:2	0/1:4,56:29:60:0.933:2	0/1:53,31:30:84:0.369:2	0/1:47,22:30:69:0.319:2	0/1:74,37:29:111:0.333:2	./.	0/1:0,46:31:46:1.00:2	0/1:30,22:31:52:0.423:2
chr5	665295	rs61731455	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,70:32:74:0.946:2	0/1:65,50:31:115:0.435:2	./.	./.	./.	0/1:22,35:30:57:0.614:2	./.
chr5	678062	rs450628	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,34:28:70:0.486:2	0/1:30,28:27:58:0.483:2	0/1:10,5:30:15:0.333:2	0/1:57,25:27:82:0.305:2	0/1:0,42:27:42:1.00:2	0/1:54,28:27:82:0.341:2	0/1:38,11:25:49:0.224:2	0/1:60,25:27:85:0.294:2	0/1:0,52:28:52:1.00:2	0/1:1,52:27:53:0.981:2	0/1:28,23:26:51:0.451:2
chr5	678087	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:127,6:33:133:0.045:2	./.	0/1:133,8:32:141:0.057:2	./.	0/1:140,15:33:155:0.097:2	./.	0/1:79,6:32:85:0.071:2	0/1:67,7:34:74:0.095:2
chr5	825280	rs1809008	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:32,30:32:62:0.484:2	0/1:13,25:33:38:0.658:2	0/1:0,8:32:8:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	825286	rs2335585	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,4:29:93:0.043:2	./.	./.	./.	./.	./.	./.
chr5	825297	rs1808545	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,6:24:103:0.058:2	./.	./.	./.	./.	./.	./.
chr5	833915	rs605088	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:98,67:32:165:0.406:2	0/1:57,55:32:112:0.491:2	0/1:1,17:31:18:0.944:2	0/1:74,67:31:141:0.475:2	0/1:115,41:30:156:0.263:2	0/1:111,49:30:160:0.306:2	0/1:56,78:31:134:0.582:2	0/1:134,31:31:165:0.188:2	0/1:76,73:31:149:0.490:2	0/1:83,60:30:143:0.420:2	0/1:129,60:32:189:0.317:2
chr5	837488	rs150921143	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:191,6:30:197:0.030:2	./.	./.	0/1:186,9:32:195:0.046:2	./.	./.	./.
chr5	837556	rs28449575	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:140,60:31:200:0.300:2	0/1:113,49:31:162:0.302:2	0/1:28,6:31:34:0.176:2	0/1:147,51:32:198:0.258:2	0/1:135,12:31:147:0.082:2	0/1:181,17:31:198:0.086:2	0/1:142,49:31:191:0.257:2	0/1:145,51:31:196:0.260:2	0/1:180,15:32:195:0.077:2	0/1:175,17:32:192:0.089:2	0/1:168,26:31:194:0.134:2
chr5	840661	rs201008730	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,3:32:41:0.073:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	840712	rs148433225	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,3:32:35:0.086:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	843723	rs3863148	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,13:31:35:0.371:2	0/1:99,54:31:153:0.353:2	./.	0/1:112,47:32:159:0.296:2	0/1:132,49:31:181:0.271:2	0/1:146,31:31:177:0.175:2	./.	0/1:131,45:32:176:0.256:2	0/1:46,120:32:166:0.723:2
chr5	843745	rs71591189	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:171,9:32:180:0.050:2	0/1:175,8:33:183:0.044:2	./.	0/1:157,12:33:169:0.071:2	./.	./.	0/1:181,4:34:185:0.022:2	0/1:180,4:33:184:0.022:2	0/1:172,7:33:179:0.039:2	./.	./.
chr5	843815	rs71591190	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,13:31:37:0.351:2	0/1:122,55:31:177:0.311:2	./.	0/1:122,47:32:169:0.278:2	./.	0/1:126,37:31:163:0.227:2	./.	0/1:146,42:32:188:0.223:2	0/1:98,83:32:181:0.459:2
chr5	876243	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:33:84:0.048:2	./.	./.
chr5	878525	rs508016	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,41:31:93:0.441:2	0/1:33,18:32:51:0.353:2	0/1:10,3:32:13:0.231:2	0/1:68,23:32:91:0.253:2	0/1:77,19:30:96:0.198:2	0/1:72,16:30:89:0.182:2	0/1:91,76:31:167:0.455:2	0/1:79,39:31:118:0.331:2	0/1:68,11:32:79:0.139:2	0/1:41,32:32:73:0.438:2	0/1:43,27:31:70:0.386:2
chr5	878551	rs145107515	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,8:32:113:0.071:2	./.	0/1:75,5:32:80:0.063:2	./.
chr5	878576	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:28:69:0.058:2	./.
chr5	891400	rs201402002	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,62:33:108:0.574:2	./.
chr5	1038179	rs374273602	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.
chr5	1057615	rs2241606	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,18:29:40:0.450:2	0/1:9,15:29:24:0.625:2	0/1:3,3:33:6:0.500:2	0/1:31,43:29:74:0.581:2	0/1:64,40:29:104:0.385:2	0/1:50,41:29:91:0.451:2	0/1:0,109:30:109:1.00:2	0/1:62,29:29:91:0.319:2	./.	./.	0/1:31,25:29:56:0.446:2
chr5	1063998	rs7722287	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,82:31:197:0.416:2	0/1:101,95:31:196:0.485:2	0/1:106,88:30:194:0.454:2	./.	./.	0/1:102,89:32:191:0.466:2	./.	./.
chr5	1065399	rs737154	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,82:32:83:0.988:2	0/1:1,32:31:33:0.970:2	0/1:0,10:29:10:1.00:2	0/1:59,52:31:111:0.468:2	0/1:65,60:30:125:0.480:2	0/1:82,50:30:132:0.379:2	0/1:0,136:31:136:1.00:2	0/1:1,116:30:118:0.991:2	0/1:0,106:32:106:1.00:2	0/1:0,73:31:73:1.00:2	0/1:30,40:31:70:0.571:2
chr5	1065514	rs56350427	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,50:28:101:0.495:2	./.	./.	./.	./.	./.
chr5	1074696	rs12515358	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,20:28:44:0.455:2	./.	./.	./.	./.	0/1:18,29:29:47:0.617:2	./.
chr5	1081702	rs6865765	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,6:33:8:0.750:2	0/1:30,32:31:62:0.516:2	0/1:37,10:30:47:0.213:2	0/1:45,28:32:73:0.384:2	./.	0/1:59,26:32:85:0.306:2	0/1:41,26:33:67:0.388:2	./.	0/1:21,11:30:32:0.344:2
chr5	1081767	rs4526148	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:30:95:1.00:2	0/1:0,61:31:61:1.00:2	0/1:10,5:30:15:0.333:2	0/1:52,66:31:118:0.559:2	0/1:35,69:31:104:0.663:2	0/1:67,67:31:134:0.500:2	0/1:1,100:30:101:0.990:2	0/1:72,100:31:172:0.581:2	0/1:42,65:31:107:0.607:2	0/1:0,104:31:105:1.00:2	0/1:25,39:30:64:0.609:2
chr5	1208964	rs60992377	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:26:8:1.00:2	0/1:22,17:27:40:0.436:2	0/1:2,23:25:25:0.920:2	./.	0/1:8,4:27:12:0.333:2	0/1:17,14:26:32:0.452:2	./.	./.	0/1:10,6:24:16:0.375:2
chr5	1212453	rs121434346	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,12:32:44:0.273:2	./.
chr5	1213668	rs7732589	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,24:31:24:1.00:2	./.	0/1:1,107:30:108:0.991:2	./.	0/1:52,59:30:111:0.532:2	0/1:65,70:29:135:0.519:2	./.	./.	0/1:47,57:30:104:0.548:2
chr5	1216775	rs4975629	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:31:46:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,20:31:20:1.00:2	0/1:2,108:31:110:0.982:2	0/1:0,132:32:132:1.00:2	0/1:0,107:31:107:1.00:2	0/1:0,107:31:107:1.00:2	0/1:0,105:31:105:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,59:31:59:1.00:2
chr5	1225613	rs7704058	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,16:32:16:1.00:2	0/1:0,18:31:18:1.00:2	./.	0/1:1,20:31:21:0.952:2	0/1:0,22:31:22:1.00:2	0/1:0,30:31:30:1.00:2	0/1:19,10:32:29:0.345:2	0/1:0,21:31:21:1.00:2	0/1:0,17:32:17:1.00:2	0/1:16,9:30:25:0.360:2	0/1:19,11:31:30:0.367:2
chr5	1225626	rs7728667	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,14:30:14:1.00:2	0/1:0,18:30:18:1.00:2	./.	0/1:1,22:29:23:0.957:2	0/1:0,22:32:22:1.00:2	0/1:0,29:30:29:1.00:2	0/1:33,9:32:42:0.214:2	0/1:0,21:31:21:1.00:2	0/1:0,14:29:14:1.00:2	0/1:22,8:28:30:0.267:2	0/1:22,10:31:32:0.313:2
chr5	1225676	rs33978774	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:14,4:32:18:0.222:2	./.	./.	./.	0/1:33,3:33:36:0.083:2	./.	./.	./.	./.	./.
chr5	1225687	rs7705355	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:30:26:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,71:30:71:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,76:31:76:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,56:30:56:1.00:2	0/1:0,66:31:66:1.00:2
chr5	1225688	rs7728814	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,25:29:27:0.926:2	0/1:0,16:30:16:1.00:2	0/1:10,3:31:13:0.231:2	0/1:1,65:30:66:0.985:2	0/1:0,71:29:71:1.00:2	0/1:0,35:29:35:1.00:2	0/1:45,33:30:78:0.423:2	0/1:0,65:30:65:1.00:2	0/1:0,26:31:26:1.00:2	0/1:40,18:27:58:0.310:2	0/1:47,22:28:69:0.319:2
chr5	1225703	rs7724858	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:32:38:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,16:34:16:1.00:2	0/1:0,95:33:95:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,93:33:93:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,37:34:37:1.00:2	0/1:0,67:33:67:1.00:2	0/1:0,70:31:70:1.00:2
chr5	1232408	rs113861454	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,45:32:92:0.489:2	./.	./.
chr5	1240757	rs7447815	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,57:33:94:0.606:2	0/1:33,25:32:58:0.431:2	./.	./.	./.	0/1:0,128:32:128:1.00:2	./.	./.	./.	0/1:0,94:32:94:1.00:2	./.
chr5	1243699	rs35661976	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,37:31:66:0.561:2	./.
chr5	1244425	rs4073918	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,97:32:98:0.990:2	0/1:3,56:33:59:0.949:2	0/1:0,19:31:19:1.00:2	./.	0/1:68,77:31:145:0.531:2	0/1:1,141:31:142:0.993:2	0/1:96,67:32:163:0.411:2	0/1:93,71:32:164:0.433:2	0/1:0,124:33:124:1.00:2	0/1:2,121:33:123:0.984:2	0/1:58,61:32:119:0.513:2
chr5	1244758	rs371159541	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	1245962	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:33:51:0.078:2	./.	./.
chr5	1255520	rs33954691	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,42:31:81:0.519:2	0/1:27,23:31:50:0.460:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	1279505	rs33956095	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:31:8:0.500:2	./.	./.
chr5	1294086	rs2736098	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,5:31:7:0.714:2	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.
chr5	1294166	rs61748181	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,8:28:15:0.533:2	./.	./.
chr5	1344522	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:164,4:33:168:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr5	1394815	rs1042098	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,19:32:64:0.297:2	0/1:22,23:29:45:0.511:2	./.	./.	./.	0/1:2,77:30:79:0.975:2	0/1:34,44:29:78:0.564:2	./.	./.	0/1:46,33:30:79:0.418:2	0/1:32,41:31:73:0.562:2
chr5	1411412	rs6347	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,7:31:24:0.292:2	0/1:9,10:30:19:0.526:2	./.	./.	./.	0/1:27,32:30:59:0.542:2	0/1:40,26:29:66:0.394:2	./.	./.	0/1:15,16:30:31:0.516:2	./.
chr5	1441511	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:32:45:0.089:2	./.	./.	./.
chr5	1443151	rs6351	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,57:33:107:0.533:2	./.	./.
chr5	1443199	rs6350	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,99:30:99:1.00:2	0/1:41,41:31:82:0.500:2	./.	./.	./.	./.	0/1:35,37:32:72:0.514:2
chr5	1463932	rs144081179	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,39:33:109:0.358:2	./.	./.	./.
chr5	1466919	rs2277006	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:30:8:0.625:2	./.	0/1:4,161:32:165:0.976:2	0/1:67,50:32:117:0.427:2	./.	./.	0/1:46,61:33:107:0.570:2	./.	0/1:28,38:32:66:0.576:2
chr5	1467004	rs35452723	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,44:31:70:0.629:2	./.	./.	./.	0/1:20,29:30:49:0.592:2	./.	./.	./.
chr5	1494852	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,5:31:187:0.027:2	./.	./.	./.
chr5	1494909	rs3733796	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,11:30:15:0.733:2	./.	./.	./.	./.	./.	0/1:37,62:29:101:0.626:2	0/1:39,28:30:68:0.418:2	./.
chr5	1494935	rs28715640	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,8:25:25:0.320:2	./.
chr5	1501695	rs17588991	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,70:30:134:0.522:2	./.	./.	./.	./.	./.	./.	./.
chr5	1798792	rs141000957	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,17:11:125:0.136:2
chr5	1799001	rs114776273	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,13:31:25:0.520:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	1878440	rs1689717	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:32:6:0.500:2	./.
chr5	1880865	rs4975753	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,24:29:46:0.522:2	0/1:27,11:30:38:0.289:2	./.	./.	./.	./.
chr5	1880891	rs2232376	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	0/1:29,34:31:63:0.540:2	./.	0/1:8,21:29:29:0.724:2	./.	./.	./.	0/1:27,35:32:62:0.565:2
chr5	2755191	rs76652220	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,14:29:19:0.737:2	./.	./.	./.	./.	./.	./.
chr5	3600334	rs844154	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,11:27:11:1.00:2	0/1:0,6:28:6:1.00:2	./.	0/1:5,4:29:9:0.444:2	0/1:0,11:26:11:1.00:2	0/1:0,3:27:3:1.00:2	0/1:1,4:24:5:0.800:2	0/1:0,7:27:7:1.00:2	./.	0/1:0,4:30:4:1.00:2	0/1:0,3:29:3:1.00:2
chr5	5146335	rs2086310	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,37:31:71:0.521:2	0/1:21,12:32:33:0.364:2	0/1:0,11:30:11:1.00:2	0/1:0,106:32:106:1.00:2	0/1:1,90:32:91:0.989:2	0/1:0,89:32:89:1.00:2	0/1:0,79:32:79:1.00:2	0/1:51,63:32:115:0.553:2	0/1:0,60:33:60:1.00:2	0/1:1,75:31:76:0.987:2	0/1:0,60:30:60:1.00:2
chr5	5146377	rs1019747	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:27:8:1.00:2	./.	./.	0/1:0,78:32:78:1.00:2	0/1:51,33:32:84:0.393:2	./.	0/1:35,20:33:55:0.364:2	0/1:46,29:32:75:0.387:2	0/1:0,63:32:63:1.00:2
chr5	5146395	rs1863968	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,68:30:68:1.00:2	0/1:0,36:30:36:1.00:2	./.	0/1:0,85:30:85:1.00:2	0/1:3,75:30:78:0.962:2	./.	0/1:42,51:30:93:0.548:2	0/1:2,86:29:88:0.977:2	0/1:29,28:29:57:0.491:2	0/1:32,40:31:72:0.556:2	./.
chr5	5200281	rs6555335	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,39:30:92:0.424:2	0/1:1,48:29:49:0.980:2	0/1:1,74:30:75:0.987:2	0/1:53,35:30:88:0.398:2	0/1:82,46:29:128:0.359:2	0/1:51,42:30:93:0.452:2	0/1:0,41:29:41:1.00:2	0/1:53,37:31:90:0.411:2
chr5	5209210	rs16875054	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:31:9:0.667:2	./.	./.	./.	./.	./.	./.	0/1:36,42:31:78:0.538:2	./.
chr5	5239921	rs11742341	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,17:32:42:0.405:2	0/1:18,17:32:35:0.486:2	./.	0/1:23,21:32:44:0.477:2	0/1:23,22:32:45:0.489:2	./.	./.	./.	./.	./.	0/1:0,61:32:61:1.00:2
chr5	5240002	rs11742370	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,24:33:45:0.533:2	0/1:9,17:32:26:0.654:2	./.	0/1:19,12:31:31:0.387:2	0/1:14,12:31:26:0.462:2	./.	./.	./.	./.	./.	0/1:0,38:32:38:1.00:2
chr5	5303424	rs34586473	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,23:32:53:0.434:2	./.	./.	./.	./.	./.	./.
chr5	5319185	rs145851675	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,68:31:136:0.500:2	./.	./.	./.
chr5	5436609	rs2578552	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:70,43:32:113:0.381:2	0/1:58,37:32:95:0.389:2	./.	0/1:70,75:32:145:0.517:2	0/1:48,33:31:81:0.407:2	0/1:63,66:32:129:0.512:2	./.	0/1:80,63:32:143:0.441:2	0/1:96,74:33:170:0.435:2	0/1:2,125:32:127:0.984:2	0/1:100,81:31:181:0.448:2
chr5	5460569	rs2578565	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,15:31:51:0.294:2	0/1:13,10:31:23:0.435:2	0/1:0,7:30:7:1.00:2	0/1:32,18:30:50:0.360:2	0/1:26,19:31:45:0.422:2	0/1:38,17:30:55:0.309:2	0/1:0,12:31:12:1.00:2	0/1:41,20:31:61:0.328:2	0/1:38,12:32:50:0.240:2	./.	0/1:48,26:31:74:0.351:2
chr5	5460619	rs2619844	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,20:33:64:0.313:2	0/1:24,13:33:37:0.351:2	0/1:0,4:32:4:1.00:2	0/1:52,28:32:81:0.350:2	0/1:35,15:32:50:0.300:2	0/1:39,25:32:64:0.391:2	0/1:1,20:32:21:0.952:2	0/1:49,21:33:70:0.300:2	0/1:58,19:33:77:0.247:2	./.	0/1:58,34:33:92:0.370:2
chr5	5462148	rs2578500	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,41:32:64:0.641:2	0/1:22,13:32:35:0.371:2	0/1:0,8:31:8:1.00:2	0/1:40,24:31:64:0.375:2	0/1:29,35:31:64:0.547:2	0/1:47,31:29:78:0.397:2	0/1:1,51:30:52:0.981:2	0/1:50,26:31:76:0.342:2	0/1:28,29:32:57:0.509:2	./.	0/1:42,23:32:65:0.354:2
chr5	6337241	rs4702336	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:25,38:32:63:0.603:2	0/1:28,11:33:39:0.282:2	./.	./.	./.	./.	0/1:51,50:32:103:0.495:2	0/1:40,48:32:88:0.545:2	./.	./.	0/1:38,32:32:70:0.457:2
chr5	6449213	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:31:42:0.095:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	6600064	rs61744358	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,33:32:68:0.485:2	./.	./.	./.	./.	./.	./.	./.
chr5	6602544	rs2303711	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,128:30:129:0.992:2	0/1:0,73:30:73:1.00:2	0/1:0,20:29:20:1.00:2	0/1:87,68:30:155:0.439:2	0/1:1,191:31:192:0.995:2	0/1:0,196:30:197:1.00:2	0/1:109,89:30:198:0.449:2	0/1:102,97:30:199:0.487:2	./.	0/1:3,126:30:129:0.977:2	0/1:0,116:30:116:1.00:2
chr5	6604787	rs13181449	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,14:32:27:0.519:2	./.	./.	./.	./.	0/1:24,18:33:42:0.429:2	./.
chr5	6605401	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,4:32:114:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr5	6620226	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:33:184:0.022:2	./.	./.	./.
chr5	6622122	rs16877704	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,41:32:99:0.414:2	./.	./.	./.	./.	./.	./.	./.
chr5	6622139	rs148924682	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,4:30:16:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	6633779	rs248793	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:35:2:1.00:2	./.	./.	./.	./.
chr5	6651970	rs3822430	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,89:28:89:1.00:2	0/1:0,61:28:61:1.00:2	0/1:7,3:29:10:0.300:2	./.	0/1:77,57:28:135:0.425:2	0/1:0,126:28:126:1.00:2	0/1:0,131:28:131:1.00:2	0/1:101,67:28:168:0.399:2	./.	0/1:62,60:29:122:0.492:2	0/1:2,163:28:165:0.988:2
chr5	6652009	rs8192186	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,131:32:131:1.00:2	0/1:0,95:32:95:1.00:2	0/1:16,7:31:23:0.304:2	./.	0/1:108,89:32:197:0.452:2	0/1:1,194:31:195:0.995:2	0/1:0,195:32:195:1.00:2	0/1:121,79:32:200:0.395:2	./.	0/1:105,85:32:190:0.447:2	0/1:2,184:32:186:0.989:2
chr5	6656210	rs3736316	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:3,71:32:74:0.959:2	0/1:0,57:32:57:1.00:2	0/1:5,9:30:14:0.643:2	./.	0/1:46,25:31:71:0.352:2	0/1:0,78:32:78:1.00:2	0/1:6,63:32:69:0.913:2	0/1:52,39:32:92:0.429:2	./.	0/1:54,42:32:96:0.438:2	0/1:0,127:32:127:1.00:2
chr5	6668344	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:32:151:0.026:2	./.	./.	./.	./.	./.
chr5	6748659	rs274681	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,164:30:165:0.994:2	0/1:0,98:29:98:1.00:2	0/1:12,23:30:35:0.657:2	0/1:121,74:29:195:0.379:2	0/1:0,184:29:184:1.00:2	0/1:1,182:29:183:0.995:2	0/1:2,189:30:191:0.990:2	0/1:99,93:29:192:0.484:2	0/1:102,82:30:184:0.446:2	0/1:0,149:30:149:1.00:2	0/1:1,185:30:186:0.995:2
chr5	6751208	rs113180271	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,5:32:7:0.833:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	7520881	rs13166360	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:70,55:31:125:0.440:2	0/1:39,32:31:71:0.451:2	0/1:12,11:32:23:0.478:2	./.	0/1:112,86:30:198:0.434:2	0/1:110,88:31:198:0.444:2	./.	./.	./.	0/1:59,62:31:121:0.512:2	0/1:2,122:31:124:0.984:2
chr5	7743787	rs62342477	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:88,80:32:168:0.476:2	0/1:47,59:32:106:0.557:2	0/1:0,29:32:29:1.00:2	./.	0/1:104,87:32:191:0.455:2	0/1:98,92:32:190:0.484:2	0/1:194,4:33:198:0.020:2	./.	0/1:3,183:33:186:0.984:2	./.	0/1:0,185:33:185:1.00:2
chr5	7757647	rs52827085	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,100:32:188:0.532:2	./.	./.	./.	./.	./.	0/1:77,82:32:159:0.516:2
chr5	7802363	rs2290910	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,30:31:65:0.462:2	./.	./.	0/1:30,29:32:59:0.492:2	./.	0/1:41,35:32:76:0.461:2	0/1:28,24:31:52:0.462:2	./.
chr5	7804706	rs148142196	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,59:30:131:0.450:2	./.
chr5	7817024	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.	./.	./.	./.	./.	./.
chr5	7826853	rs79684971	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,44:32:95:0.463:2	./.	./.	./.	./.	./.	0/1:34,48:32:82:0.585:2
chr5	7835555	rs6883562	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:18,22:32:40:0.550:2	0/1:1,3:32:4:0.750:2	./.	./.	./.	./.	./.	0/1:9,20:31:29:0.690:2	./.	0/1:19,11:30:30:0.367:2	./.
chr5	7866901	rs140517837	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,55:32:127:0.433:2
chr5	7866967	rs162030	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,27:29:68:0.397:2	0/1:16,21:28:37:0.568:2	0/1:0,7:29:7:1.00:2	0/1:0,54:29:54:1.00:2	0/1:1,40:29:41:0.976:2	0/1:0,48:29:48:1.00:2	0/1:0,40:29:40:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,74:30:74:1.00:2	0/1:0,49:29:49:1.00:2	0/1:1,101:29:102:0.990:2
chr5	7867027	rs77130393	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,56:31:89:0.629:2	./.	./.
chr5	7868030	rs2966952	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:79,50:33:129:0.388:2	0/1:36,12:33:48:0.250:2	0/1:0,13:33:13:1.00:2	0/1:0,110:33:110:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,137:32:137:1.00:2	0/1:1,98:33:99:0.990:2	0/1:2,130:33:132:0.985:2	0/1:0,120:34:120:1.00:2	0/1:0,93:33:93:1.00:2	0/1:0,120:33:120:1.00:2
chr5	7869235	rs72716536	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	0/1:0,41:30:41:1.00:2	./.	./.	./.	./.	./.
chr5	7870973	rs1801394	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,51:32:129:0.395:2	0/1:34,29:33:63:0.460:2	0/1:4,4:34:8:0.500:2	0/1:70,67:33:137:0.489:2	0/1:67,48:32:115:0.417:2	./.	0/1:2,169:32:171:0.988:2	0/1:88,83:33:171:0.485:2	0/1:1,177:33:178:0.994:2	./.	0/1:74,74:32:148:0.500:2
chr5	7878179	rs1532268	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:31:7:0.429:2	0/1:1,69:31:70:0.986:2	0/1:1,44:31:45:0.978:2	0/1:20,18:30:38:0.474:2	0/1:0,48:31:48:1.00:2	./.	./.	0/1:0,40:32:40:1.00:2	0/1:34,22:32:56:0.393:2
chr5	7878192	rs161870	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:32:9:0.556:2	./.	./.	0/1:23,23:30:46:0.500:2	./.	./.	./.	./.	./.
chr5	7885959	rs162036	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,5:31:17:0.294:2	./.	./.	0/1:88,51:32:139:0.367:2	./.	./.	./.	./.	./.
chr5	7889389	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:32:110:0.036:2	./.
chr5	7891546	rs113005255	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,80:33:189:0.423:2	./.	./.
chr5	7892933	rs35890938	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,76:33:146:0.521:2	./.	./.
chr5	7893005	rs34172797	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,40:32:71:0.563:2	./.	./.
chr5	7895942	rs139206262	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,13:32:45:0.289:2
chr5	7897061	rs6874544	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,83:33:191:0.435:2	./.	./.
chr5	7897073	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.	./.	./.	./.
chr5	7897191	rs10380	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,21:30:50:0.420:2	./.	./.	./.	./.	./.
chr5	7897283	rs12347	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,10:30:23:0.435:2	./.	./.	0/1:66,66:30:132:0.500:2	./.	./.	./.	./.	./.
chr5	7897319	rs1802059	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,12:30:26:0.462:2	0/1:0,120:31:120:1.00:2	0/1:0,159:31:159:1.00:2	0/1:72,69:31:141:0.489:2	0/1:3,150:32:153:0.980:2	./.	./.	0/1:0,85:32:85:1.00:2	0/1:50,48:32:98:0.490:2
chr5	9122890	rs17238053	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,61:31:122:0.500:2	./.	./.	./.	./.	./.	./.
chr5	9136646	rs17238609	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,41:31:82:0.500:2	./.	./.	./.	./.	./.	./.
chr5	9154659	rs1806151	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,37:31:79:0.468:2	0/1:32,28:31:60:0.467:2	0/1:0,10:32:10:1.00:2	0/1:0,108:32:108:1.00:2	0/1:72,68:32:140:0.486:2	0/1:1,98:32:99:0.990:2	0/1:81,36:32:117:0.308:2	0/1:68,76:33:144:0.528:2	0/1:0,80:33:80:1.00:2	0/1:36,50:33:86:0.581:2	0/1:43,51:31:94:0.543:2
chr5	9154688	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:32:112:0.036:2	./.	./.	./.	./.	./.
chr5	9190404	rs1806095	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:31:13:0.462:2	./.	./.	./.	0/1:38,33:31:71:0.465:2	./.	./.	./.	./.
chr5	9629529	rs2234233	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,15:32:26:0.577:2	0/1:14,9:31:23:0.391:2	./.	./.	./.	./.	./.	./.	0/1:9,9:32:18:0.500:2	./.	./.
chr5	9630233	rs138940415	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:96,93:32:189:0.492:2	0/1:45,60:32:105:0.571:2	./.	./.	0/1:88,42:31:130:0.323:2	./.	./.	./.	./.	./.	./.
chr5	10239261	rs2438652	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,60:31:149:0.403:2	./.	0/1:107,66:31:173:0.382:2	./.	0/1:5,148:32:153:0.967:2	./.	./.	./.
chr5	10239278	rs2252505	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,8:31:27:0.296:2	0/1:71,51:31:122:0.418:2	0/1:76,78:31:154:0.506:2	0/1:91,58:31:149:0.389:2	0/1:1,169:32:170:0.994:2	0/1:4,129:32:133:0.970:2	0/1:77,89:33:166:0.536:2	0/1:63,66:32:129:0.512:2	0/1:60,66:32:126:0.524:2
chr5	10249945	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,5:18:19:0.263:2	./.	./.	./.	./.	./.
chr5	10254817	rs2578617	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,101:33:103:0.981:2	0/1:0,45:32:45:1.00:2	0/1:0,17:32:17:1.00:2	0/1:91,72:32:163:0.442:2	0/1:0,118:32:118:1.00:2	0/1:86,85:32:171:0.497:2	0/1:2,134:32:137:0.985:2	0/1:110,83:32:193:0.430:2	0/1:0,130:33:130:1.00:2	0/1:2,134:32:136:0.985:2	./.
chr5	10254912	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:31:127:0.031:2	./.	./.	./.	./.	./.
chr5	10256161	rs1042392	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:29:57:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,12:31:12:1.00:2	0/1:39,46:29:86:0.541:2	0/1:0,78:29:78:1.00:2	0/1:57,53:29:110:0.482:2	0/1:1,70:30:71:0.986:2	0/1:49,54:30:103:0.524:2	0/1:0,91:31:91:1.00:2	0/1:4,66:30:70:0.943:2	./.
chr5	10258512	rs11557649	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:154,4:31:158:0.025:2	0/1:111,6:31:117:0.051:2	./.	./.	0/1:140,6:31:146:0.041:2	./.	./.	./.
chr5	10258551	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:152,4:33:156:0.026:2	0/1:109,6:32:115:0.052:2	./.	./.	0/1:128,8:33:136:0.059:2	./.	./.	0/1:169,5:27:175:0.029:2
chr5	10282396	rs10067744	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,81:31:82:0.988:2	0/1:0,45:30:45:1.00:2	0/1:6,7:30:13:0.538:2	0/1:4,108:31:112:0.964:2	0/1:0,54:30:54:1.00:2	./.	0/1:0,58:30:58:1.00:2	0/1:40,39:30:79:0.494:2	0/1:62,35:31:97:0.361:2	0/1:0,70:30:70:1.00:2	0/1:78,62:30:140:0.443:2
chr5	10377916	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:33:67:0.060:2	./.	./.	./.	./.	./.
chr5	10423862	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,4:33:31:0.129:2
chr5	10461325	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,5:30:54:0.093:2	./.	./.
chr5	10683627	rs5745290	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,17:31:53:0.327:2	./.	./.
chr5	10761137	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,11:13:39:0.282:2	./.	./.
chr5	10761182	rs267927	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,14:32:14:1.00:2	0/1:0,5:30:5:1.00:2	./.	0/1:0,13:31:13:1.00:2	0/1:0,15:28:15:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,16:30:16:1.00:2
chr5	10973727	rs1566622	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,78:30:133:0.586:2	./.	./.	./.	./.	./.
chr5	10981921	rs2228958	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,48:31:98:0.490:2	./.
chr5	11117583	rs2285975	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:31:11:0.273:2	./.	./.	./.	0/1:65,47:31:112:0.420:2	0/1:57,66:31:123:0.537:2	./.	./.	./.
chr5	13701525	rs3734111	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,29:29:29:1.00:2	0/1:0,21:29:21:1.00:2	./.	0/1:0,41:30:41:1.00:2	./.	0/1:34,14:29:48:0.292:2	0/1:1,20:29:21:0.952:2	0/1:0,31:29:31:1.00:2	0/1:23,27:30:50:0.540:2	0/1:0,29:29:29:1.00:2	./.
chr5	13701536	rs3734110	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,28:32:28:1.00:2	0/1:0,18:31:18:1.00:2	./.	0/1:0,34:32:34:1.00:2	./.	0/1:28,10:31:38:0.263:2	0/1:1,19:32:20:0.950:2	0/1:0,24:30:24:1.00:2	0/1:21,20:33:41:0.488:2	0/1:0,26:33:26:1.00:2	./.
chr5	13717471	rs2277046	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,29:31:76:0.382:2	./.	./.	./.	./.	./.	0/1:0,54:30:54:1.00:2
chr5	13719022	rs30169	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:82,56:32:138:0.406:2	0/1:41,34:32:75:0.453:2	./.	0/1:1,102:33:103:0.990:2	./.	./.	0/1:3,100:32:104:0.971:2	0/1:111,79:32:190:0.416:2	0/1:81,68:33:149:0.456:2	0/1:66,47:33:113:0.416:2	./.
chr5	13719089	rs30168	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:60,60:30:121:0.500:2	0/1:50,44:32:94:0.468:2	./.	0/1:2,128:30:130:0.985:2	./.	./.	0/1:3,148:30:152:0.980:2	0/1:84,73:31:157:0.465:2	0/1:97,76:31:173:0.439:2	0/1:73,52:31:126:0.416:2	./.
chr5	13721137	rs140832239	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:33:12:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	13737444	rs17263496	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,43:30:100:0.430:2	0/1:52,32:31:84:0.381:2	./.	./.	./.	0/1:78,50:30:128:0.391:2	./.	0/1:74,45:30:119:0.378:2	./.	0/1:53,44:30:97:0.454:2	./.
chr5	13751289	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,4:30:31:0.129:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	13754373	.	A	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:126,12:17:138:0.087:2	./.	./.	0/1:134,19:13:154:0.124:2	0/1:135,23:13:158:0.146:2	0/1:119,9:19:128:0.070:2	0/1:138,15:15:153:0.098:2	0/1:144,19:11:163:0.117:2	0/1:147,20:14:167:0.120:2	0/1:112,20:14:134:0.152:2	0/1:137,15:16:152:0.099:2
chr5	13754394	rs2401809	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,178:32:179:0.994:2	0/1:0,97:31:97:1.00:2	0/1:8,14:29:22:0.636:2	0/1:1,186:31:187:0.995:2	0/1:109,88:31:197:0.447:2	./.	0/1:4,193:31:197:0.980:2	0/1:96,94:31:190:0.495:2	0/1:93,100:32:193:0.518:2	./.	./.
chr5	13762972	rs6554812	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,21:33:62:0.339:2	0/1:18,24:33:42:0.571:2	0/1:3,4:32:7:0.571:2	0/1:1,73:33:74:0.986:2	0/1:20,34:32:54:0.630:2	./.	0/1:25,21:31:46:0.457:2	0/1:40,27:33:67:0.403:2	0/1:35,47:33:82:0.573:2	./.	./.
chr5	13780991	rs111995400	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,30:31:71:0.423:2	./.	./.	./.	./.	0/1:37,16:31:53:0.302:2	./.
chr5	13788886	rs10513155	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:59,42:33:101:0.416:2	0/1:34,22:32:56:0.393:2	./.	./.	0/1:27,23:32:50:0.460:2	./.	0/1:29,22:32:51:0.431:2	./.	./.	0/1:39,36:32:75:0.480:2	./.
chr5	13789016	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:33:91:0.044:2	./.	./.
chr5	13811775	rs10078391	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,17:30:58:0.293:2	./.	0/1:50,27:29:77:0.351:2	./.	./.	./.	./.	0/1:45,28:30:73:0.384:2
chr5	13829799	rs1348689	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,5:33:7:0.714:2	0/1:20,21:33:41:0.512:2	0/1:20,24:32:44:0.545:2	0/1:27,26:31:53:0.491:2	./.	./.	./.	0/1:22,15:33:38:0.405:2	0/1:32,29:32:61:0.475:2
chr5	13830742	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:32:57:0.070:2	./.	./.	./.	./.	./.
chr5	13845045	rs10041113	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,44:32:44:1.00:2	0/1:13,22:32:35:0.629:2	0/1:26,28:32:54:0.519:2	./.	./.	./.	0/1:17,26:32:43:0.605:2	./.
chr5	13864728	rs6554827	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:25,33:31:58:0.569:2	0/1:10,18:32:28:0.643:2	0/1:7,5:30:12:0.417:2	./.	0/1:43,54:31:97:0.557:2	0/1:0,108:31:108:1.00:2	./.	./.	0/1:1,94:32:95:0.989:2	0/1:35,38:32:73:0.521:2	0/1:0,75:32:75:1.00:2
chr5	13865980	rs7703349	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,10:29:29:0.345:2	0/1:7,4:28:11:0.364:2	./.	0/1:25,17:30:42:0.405:2	0/1:20,15:28:35:0.429:2	0/1:0,39:28:39:1.00:2	./.	./.	0/1:0,40:29:41:1.00:2	0/1:13,16:29:29:0.552:2	0/1:0,62:28:62:1.00:2
chr5	13876888	rs61747516	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,24:32:47:0.522:2	./.	./.	./.	./.	./.	./.	./.
chr5	13882841	rs10057007	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,26:33:50:0.520:2	0/1:22,24:32:46:0.522:2	0/1:3,3:33:6:0.500:2	0/1:25,28:31:53:0.528:2	0/1:18,17:31:35:0.486:2	./.	./.	./.	./.	./.	./.
chr5	13882858	rs16902880	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,35:32:72:0.486:2	./.	./.	./.	./.	./.	./.	./.
chr5	13883148	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,25:31:58:0.431:2	./.	./.	./.	./.	./.	./.	./.
chr5	13883171	rs16902886	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,19:25:47:0.404:2	./.	./.	./.	./.	./.	./.	./.
chr5	13886133	rs76229167	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,20:31:55:0.364:2	./.	./.	./.	./.	./.	./.	./.
chr5	13894894	rs4701997	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,45:31:46:1.00:2	0/1:0,43:31:43:1.00:2	./.	0/1:28,19:31:47:0.404:2	0/1:0,49:31:49:1.00:2	0/1:24,20:30:44:0.455:2	./.	./.	0/1:1,46:33:47:0.979:2	0/1:24,22:31:46:0.478:2	0/1:0,50:32:50:1.00:2
chr5	13900345	rs1445823	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,23:33:47:0.489:2	0/1:40,31:32:71:0.437:2	0/1:0,37:31:37:1.00:2	0/1:1,46:32:47:0.979:2	0/1:28,23:32:51:0.451:2	0/1:37,24:32:61:0.393:2	./.
chr5	13902220	rs1530498	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,3:31:20:0.150:2	0/1:11,3:33:14:0.214:2	0/1:0,22:33:22:1.00:2	0/1:0,34:32:34:1.00:2	0/1:15,12:33:27:0.444:2	0/1:19,13:32:32:0.406:2	./.
chr5	13913885	rs3213936	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,18:29:44:0.409:2	0/1:30,39:29:69:0.565:2	0/1:0,49:30:49:1.00:2	0/1:0,47:29:47:1.00:2	0/1:49,32:30:81:0.395:2	0/1:37,24:30:61:0.393:2	./.
chr5	13931340	rs1530496	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,36:30:39:0.947:2	0/1:1,29:32:30:0.967:2	./.	0/1:14,23:30:37:0.622:2	0/1:22,18:30:40:0.450:2	0/1:34,17:31:51:0.333:2	0/1:35,16:31:51:0.314:2	0/1:0,44:32:44:1.00:2	./.	0/1:29,22:31:51:0.431:2	./.
chr5	13944512	rs339445	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,22:33:22:1.00:2	0/1:0,10:34:10:1.00:2	./.	0/1:0,35:33:35:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,34:35:34:1.00:2	0/1:0,43:33:43:1.00:2	0/1:0,41:33:41:1.00:2
chr5	14287103	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:125,6:29:131:0.046:2	./.	./.	./.	./.	./.	./.	./.
chr5	14363982	rs149099057	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,66:32:118:0.559:2
chr5	14368975	rs13189406	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,59:31:152:0.388:2	0/1:92,69:31:161:0.429:2	0/1:83,67:32:150:0.447:2	0/1:71,63:32:134:0.470:2	./.	./.
chr5	14389469	rs7715916	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,58:31:62:0.935:2	./.	./.	./.	0/1:40,42:30:82:0.512:2	./.	./.	./.
chr5	14390390	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:30:125:0.032:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	14397238	rs30774	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,94:28:96:0.979:2	./.	./.	0/1:73,47:28:120:0.392:2	0/1:1,126:28:128:0.992:2	0/1:65,44:29:109:0.404:2	./.	./.
chr5	14420027	rs30612	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:31:102:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,149:32:149:1.00:2	0/1:0,133:32:133:1.00:2	0/1:0,135:32:135:1.00:2	0/1:63,66:31:129:0.512:2	0/1:0,139:32:139:1.00:2	0/1:0,126:33:126:1.00:2	0/1:48,45:31:93:0.484:2	0/1:0,111:31:111:1.00:2
chr5	14462890	rs17500731	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,61:31:140:0.436:2	./.	./.	./.	0/1:86,64:31:150:0.427:2	./.	./.	./.
chr5	14488037	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.
chr5	14498727	rs26107	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,10:32:27:0.370:2	0/1:73,70:31:143:0.490:2	./.	./.	0/1:87,92:31:179:0.514:2	./.	./.	0/1:68,46:31:114:0.404:2	./.
chr5	14601189	rs76754467	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,55:32:116:0.474:2	./.	./.	./.	./.	./.	./.	./.
chr5	14610309	rs16903574	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,15:33:28:0.536:2	./.	./.	./.	./.	./.
chr5	14678872	rs376880523	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:189,4:34:193:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr5	14741984	rs2288474	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:56,50:29:106:0.472:2	0/1:45,27:30:72:0.375:2	./.	0/1:1,143:30:144:0.993:2	./.	./.	./.	./.	./.	./.	./.
chr5	14769103	rs17251667	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:77,73:31:150:0.487:2	0/1:32,21:32:53:0.396:2	0/1:11,4:31:15:0.267:2	0/1:108,77:31:185:0.416:2	./.	0/1:104,78:31:184:0.429:2	./.	./.	./.	./.	0/1:92,85:31:177:0.480:2
chr5	15937010	rs61748187	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,52:30:94:0.553:2	./.	./.	0/1:70,70:31:140:0.500:2	./.	./.	./.	./.
chr5	16177942	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:31:131:0.031:2	./.	./.	./.	./.	./.
chr5	16177949	rs114849718	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,83:31:154:0.539:2	./.	./.	./.	./.	./.	./.	./.
chr5	16478200	rs162848	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,26:30:67:0.388:2	0/1:29,22:32:51:0.431:2	0/1:0,6:31:6:1.00:2	0/1:23,26:31:49:0.531:2	0/1:2,28:31:30:0.933:2	0/1:28,28:30:56:0.500:2	0/1:0,39:30:39:1.00:2	./.	0/1:43,33:31:76:0.434:2	./.	0/1:0,106:31:106:1.00:2
chr5	16481185	rs16868675	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,16:33:31:0.516:2	./.	./.	./.	./.	./.
chr5	16508674	rs332811	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,91:33:91:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,12:32:12:1.00:2	0/1:44,50:33:94:0.532:2	0/1:32,33:31:65:0.508:2	0/1:38,54:32:92:0.587:2	0/1:55,41:32:96:0.427:2	./.	0/1:1,137:33:138:0.993:2	./.	0/1:2,160:33:162:0.988:2
chr5	16673975	rs25901	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,31:31:31:1.00:2	0/1:0,23:31:23:1.00:2	./.	0/1:0,37:31:37:1.00:2	0/1:0,35:31:35:1.00:2	./.	0/1:0,33:31:33:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,34:33:34:1.00:2	./.	0/1:0,73:32:73:1.00:2
chr5	16701347	rs371447078	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:164,4:31:168:0.024:2	./.	./.	./.	./.	./.	./.
chr5	16701800	rs189081482	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,37:31:88:0.420:2	./.	./.	./.
chr5	16769273	rs11750538	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,20:33:45:0.444:2	0/1:16,9:31:25:0.360:2	0/1:11,7:32:18:0.389:2	0/1:37,36:31:73:0.493:2	0/1:0,61:31:61:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,86:31:86:1.00:2	0/1:2,66:31:68:0.971:2	0/1:49,17:32:66:0.258:2	0/1:0,66:32:66:1.00:2	0/1:0,78:32:78:1.00:2
chr5	16794780	rs7737765	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:40,34:32:74:0.459:2	0/1:32,20:31:52:0.385:2	./.	0/1:22,38:30:60:0.633:2	./.	./.	0/1:67,75:30:142:0.528:2	0/1:55,61:31:116:0.526:2	./.	./.	./.
chr5	16794855	rs61743057	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,25:32:51:0.490:2	0/1:20,22:32:42:0.524:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	16794916	rs396514	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:27,17:33:44:0.386:2	0/1:14,16:32:30:0.533:2	./.	./.	./.	./.	./.	0/1:17,17:32:34:0.500:2	0/1:13,16:33:29:0.552:2	0/1:8,15:33:23:0.652:2	./.
chr5	17275799	rs374321272	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,9:31:20:0.450:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	17276080	rs62348046	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,5:33:62:0.081:2	./.	./.	./.	./.	./.
chr5	17276195	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:32:75:0.053:2	./.	./.
chr5	17276859	rs113719394	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,6:18:36:0.167:2
chr5	19591174	rs17285716	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,23:33:49:0.469:2	0/1:18,17:32:35:0.486:2	./.	./.	./.	0/1:1,46:33:47:0.979:2	./.	0/1:36,33:32:69:0.478:2	0/1:44,26:34:70:0.371:2	./.	0/1:49,38:33:87:0.437:2
chr5	19721490	rs12187552	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,119:33:119:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,99:33:99:1.00:2	0/1:0,110:32:110:1.00:2	0/1:0,132:33:132:1.00:2	0/1:0,143:33:143:1.00:2	0/1:0,140:33:140:1.00:2	0/1:0,132:34:132:1.00:2	0/1:0,91:33:91:1.00:2	0/1:0,124:33:124:1.00:2
chr5	19721507	rs184208296	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,56:30:117:0.479:2	./.	./.	./.	./.	./.	./.
chr5	19747153	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:32:170:0.024:2	./.	./.	./.	./.	./.
chr5	21752050	rs6451992	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:31:89:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,16:33:16:1.00:2	0/1:1,119:31:120:0.992:2	0/1:2,78:32:80:0.975:2	0/1:0,132:31:132:1.00:2	0/1:2,113:31:115:0.983:2	0/1:3,88:33:91:0.967:2	0/1:66,59:32:125:0.472:2	0/1:0,70:31:70:1.00:2	0/1:0,129:31:129:1.00:2
chr5	21752056	rs6451993	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:29:80:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,15:30:15:1.00:2	0/1:1,119:29:120:0.992:2	0/1:1,75:29:76:0.987:2	0/1:0,125:29:125:1.00:2	0/1:2,104:29:106:0.981:2	0/1:3,90:30:93:0.968:2	0/1:65,57:30:122:0.467:2	0/1:0,75:29:75:1.00:2	0/1:0,133:29:133:1.00:2
chr5	21760731	rs2303749	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,16:34:43:0.372:2	./.	./.
chr5	21817206	rs17328673	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,19:33:36:0.528:2	./.	./.	./.	./.	./.	./.	./.
chr5	22078584	rs4371716	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,148:32:149:0.993:2	0/1:83,66:31:149:0.443:2	0/1:78,57:31:135:0.422:2
chr5	23509644	rs370206811	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,68:30:153:0.444:2	./.	./.	./.	./.	./.
chr5	23510105	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,6:31:163:0.037:2	./.	./.	./.
chr5	23510108	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,6:30:159:0.038:2	./.	./.	./.
chr5	23510123	rs201590420	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:31:115:0.035:2	./.	./.	./.
chr5	23521204	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,6:30:105:0.057:2	./.	./.	./.
chr5	23521211	rs200064068	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:30:98:0.041:2	./.	./.	./.
chr5	23521243	rs187402591	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:31:72:0.056:2	./.	./.	./.
chr5	23523452	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,4:30:83:0.048:2	./.	./.	./.	./.	./.	./.	./.
chr5	23524481	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,6:27:158:0.038:2
chr5	23524572	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:118,4:32:122:0.033:2	0/1:91,8:31:99:0.081:2	./.	0/1:180,5:32:185:0.027:2	./.	./.	./.	./.	./.	0/1:147,6:33:153:0.039:2	0/1:163,5:34:168:0.030:2
chr5	23524575	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:121,5:32:126:0.040:2	0/1:90,8:32:98:0.082:2	./.	0/1:183,5:33:188:0.027:2	./.	./.	./.	./.	./.	0/1:150,6:32:156:0.038:2	0/1:164,5:33:169:0.030:2
chr5	23526915	rs199686868	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,6:30:65:0.095:2	./.	./.	./.	./.	./.	./.
chr5	23526968	rs200381384	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,9:24:54:0.170:2	./.	./.	./.	./.	./.	./.
chr5	23526987	rs74710141	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,5:30:53:0.094:2	./.	./.	0/1:57,4:28:61:0.066:2
chr5	23526999	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:74,4:31:78:0.051:2	./.	./.	./.	0/1:45,7:30:52:0.135:2	./.	./.	./.	./.	0/1:61,5:27:66:0.076:2	./.
chr5	23527104	rs201651766	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,37:31:76:0.487:2	./.	./.	./.	./.	./.	./.	./.
chr5	23527188	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,6:30:73:0.082:2	./.	./.	./.	./.	./.	./.	./.
chr5	23527239	rs6875787	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,51:30:61:0.836:2	0/1:5,26:30:31:0.839:2	./.	0/1:15,66:32:81:0.815:2	0/1:31,20:31:52:0.392:2	0/1:17,49:31:66:0.742:2	0/1:11,53:29:64:0.828:2	0/1:14,60:31:74:0.811:2	0/1:13,43:32:56:0.768:2	0/1:16,47:31:64:0.746:2	0/1:17,33:32:50:0.660:2
chr5	23527251	rs111488757	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:32:65:0.062:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	23527323	rs200539936	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:56,10:31:66:0.152:2	0/1:39,7:30:46:0.152:2	0/1:7,6:28:13:0.462:2	./.	0/1:47,8:28:55:0.145:2	0/1:61,9:28:70:0.129:2	0/1:67,5:31:72:0.069:2	0/1:68,9:31:77:0.117:2	0/1:62,7:32:69:0.101:2	0/1:58,13:31:71:0.183:2	0/1:53,9:32:62:0.145:2
chr5	23527324	rs200723191	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:31:13:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	23527565	rs77287813	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,32:30:80:0.400:2	./.	./.	./.
chr5	23527637	rs61051796	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:32:10:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	23527721	rs201643800	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,6:30:42:0.143:2	./.	./.	0/1:77,5:25:82:0.061:2	./.	./.	0/1:71,7:23:78:0.090:2	0/1:78,5:31:83:0.060:2	0/1:80,4:32:84:0.048:2	0/1:93,5:30:98:0.051:2
chr5	23527777	rs113958470	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,35:32:75:0.467:2	./.	./.	./.
chr5	26903887	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,44:33:95:0.463:2	./.	./.
chr5	26988322	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:191,4:34:195:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr5	26988328	rs2288466	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,92:31:187:0.495:2	0/1:86,67:31:153:0.438:2	./.	0/1:95,77:31:172:0.448:2	0/1:120,73:31:193:0.378:2	0/1:82,96:32:178:0.539:2	./.	0/1:93,96:31:189:0.508:2
chr5	26988424	rs2288467	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,34:32:71:0.479:2	0/1:26,13:32:39:0.333:2	./.	0/1:29,25:32:54:0.463:2	0/1:42,29:32:71:0.408:2	0/1:43,38:33:81:0.469:2	./.	0/1:47,43:33:90:0.478:2
chr5	31302288	rs2287582	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,57:33:131:0.435:2	0/1:37,37:32:74:0.500:2	0/1:8,7:31:15:0.467:2	0/1:0,171:31:171:1.00:2	0/1:64,50:31:114:0.439:2	0/1:86,72:31:158:0.456:2	0/1:88,76:31:164:0.463:2	0/1:100,69:32:169:0.408:2	0/1:99,85:32:184:0.462:2	0/1:69,50:32:121:0.420:2	./.
chr5	31317494	rs2302904	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,31:32:70:0.443:2	0/1:25,28:31:53:0.528:2	0/1:3,10:32:13:0.769:2	0/1:0,91:32:91:1.00:2	0/1:64,25:32:89:0.281:2	0/1:52,32:32:84:0.381:2	0/1:61,33:32:94:0.351:2	0/1:45,37:31:82:0.451:2	0/1:58,57:33:115:0.496:2	0/1:46,38:31:84:0.452:2	./.
chr5	31317529	rs2302903	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,39:32:82:0.476:2	0/1:26,25:31:51:0.490:2	0/1:6,8:33:14:0.571:2	0/1:1,108:32:109:0.991:2	0/1:65,29:30:94:0.309:2	0/1:61,40:32:101:0.396:2	0/1:64,44:32:108:0.407:2	0/1:51,49:32:100:0.490:2	0/1:66,63:33:129:0.488:2	0/1:50,35:30:86:0.412:2	./.
chr5	31317952	rs2229575	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,14:28:34:0.412:2	0/1:17,15:27:32:0.469:2	./.	0/1:0,60:28:60:1.00:2	0/1:26,37:28:63:0.587:2	0/1:38,39:29:77:0.506:2	0/1:40,18:28:58:0.310:2	0/1:34,12:29:46:0.261:2	0/1:28,29:30:57:0.509:2	0/1:25,19:29:44:0.432:2	./.
chr5	31323058	rs146257998	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,54:30:94:0.574:2	./.	./.	./.
chr5	31409252	rs2241337	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,49:32:96:0.510:2	0/1:41,47:31:88:0.534:2	0/1:0,79:31:79:1.00:2	./.	./.	0/1:46,38:33:84:0.452:2	0/1:55,34:31:89:0.382:2	./.
chr5	31423007	rs2287584	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,12:30:26:0.462:2	0/1:13,4:23:17:0.235:2	0/1:0,26:26:26:1.00:2	./.	./.	0/1:14,24:30:38:0.632:2	0/1:13,9:31:22:0.409:2	./.
chr5	31495479	rs61751194	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,4:32:31:0.129:2	./.	./.
chr5	31515657	rs55656741	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,10:32:34:0.294:2	0/1:9,10:32:19:0.526:2	./.	./.	0/1:22,9:31:31:0.290:2	0/1:14,17:32:31:0.548:2	0/1:0,22:33:22:1.00:2	0/1:28,9:31:37:0.243:2	0/1:0,28:32:28:1.00:2	0/1:14,16:32:30:0.533:2	./.
chr5	31526371	rs61748191	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,70:33:152:0.461:2	./.	./.	./.	./.	./.	./.	./.
chr5	31526496	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:33:119:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	31538692	rs17410000	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,55:32:55:1.00:2	0/1:0,36:32:36:1.00:2	./.	./.	./.	./.	./.	0/1:44,39:33:83:0.470:2	0/1:45,42:33:87:0.483:2	0/1:29,21:29:50:0.420:2	./.
chr5	31552895	rs16901277	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,38:30:108:0.352:2	./.	./.	./.	./.	./.
chr5	32037369	rs150538926	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,35:31:78:0.455:2	./.	./.	0/1:38,27:32:65:0.415:2	./.	./.
chr5	32053922	rs10940998	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,60:31:165:0.364:2	./.	./.	./.
chr5	32058115	rs151861	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,108:28:109:0.991:2	0/1:0,67:28:67:1.00:2	0/1:0,17:28:17:1.00:2	0/1:53,58:28:111:0.523:2	0/1:1,83:29:84:0.988:2	0/1:1,103:29:104:0.990:2	0/1:2,84:30:86:0.977:2	0/1:1,100:28:101:0.990:2	0/1:0,100:29:100:1.00:2	0/1:2,76:28:78:0.974:2	0/1:0,103:28:103:1.00:2
chr5	32074173	rs79901850	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,53:32:87:0.609:2	./.	0/1:32,42:32:74:0.568:2	./.	./.
chr5	32074392	rs2291114	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,21:32:47:0.447:2	./.	0/1:18,26:30:44:0.591:2	0/1:15,9:32:24:0.375:2	0/1:19,17:32:36:0.472:2	0/1:17,8:33:25:0.320:2	./.	0/1:10,17:33:27:0.630:2
chr5	32074509	rs2291113	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:31:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	32074529	rs34748216	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,20:28:35:0.571:2	./.	./.	./.	./.	./.	./.
chr5	32087253	rs157495	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,38:29:126:0.302:2	./.	./.	0/1:58,44:29:102:0.431:2	0/1:60,46:30:106:0.434:2	0/1:0,97:29:97:1.00:2	./.	0/1:98,38:29:136:0.279:2
chr5	32087326	rs3101878	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,32:31:81:0.395:2	./.	0/1:21,36:31:57:0.632:2	./.	./.
chr5	32087374	rs157496	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,19:31:57:0.333:2	./.	./.	0/1:34,22:29:56:0.393:2	0/1:29,46:29:75:0.613:2	0/1:0,48:31:49:1.00:2	./.	0/1:34,16:29:50:0.320:2
chr5	32087430	rs3135427	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,20:31:47:0.435:2	./.	0/1:22,27:33:49:0.551:2	./.	./.
chr5	32087802	rs157497	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,46:30:98:0.469:2	0/1:48,23:29:71:0.324:2	./.	0/1:59,29:31:89:0.330:2	0/1:1,69:29:70:0.986:2	0/1:1,93:31:94:0.989:2	./.	0/1:69,33:32:102:0.324:2
chr5	32087808	rs3733720	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,38:32:72:0.528:2	./.	./.	./.
chr5	32088380	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,28:33:76:0.368:2
chr5	32088500	rs3101873	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,13:30:33:0.394:2	./.	0/1:15,17:31:32:0.531:2	./.	./.
chr5	32088852	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:32:98:0.041:2
chr5	32089822	rs114875003	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,32:31:78:0.410:2	./.	./.	./.	./.	./.	./.
chr5	32090028	rs141573776	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,56:30:117:0.479:2	./.	./.	./.
chr5	32090100	rs283121	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,30:32:50:0.600:2
chr5	32090294	rs10066063	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:30:11:0.455:2	./.	./.	./.	./.	0/1:58,41:32:99:0.414:2	./.	./.	./.
chr5	32093070	rs16889442	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,9:32:27:0.333:2	./.	./.	./.	./.	0/1:100,96:32:196:0.490:2	./.	./.	./.
chr5	32093082	rs149447762	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,8:32:28:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	32239166	rs145308792	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,45:29:84:0.536:2	./.	./.	./.
chr5	32388613	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:130,4:32:134:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr5	32400266	rs1051489	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:47,49:32:96:0.510:2	0/1:28,20:32:48:0.417:2	./.	0/1:62,39:33:101:0.386:2	0/1:2,70:32:72:0.972:2	0/1:34,43:32:77:0.558:2	./.	0/1:49,49:32:98:0.500:2	0/1:49,54:33:103:0.524:2	0/1:48,52:32:101:0.520:2	./.
chr5	32403346	rs4867440	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,110:32:110:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,15:30:15:1.00:2	0/1:87,70:31:157:0.446:2	0/1:4,137:31:141:0.972:2	0/1:0,114:31:114:1.00:2	0/1:104,61:32:165:0.370:2	0/1:1,163:31:164:0.994:2	0/1:0,178:32:178:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,125:32:125:1.00:2
chr5	32415216	rs78205599	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:166,16:13:182:0.088:2	./.	./.	./.	0/1:161,21:14:182:0.115:2	./.	./.	./.
chr5	32774860	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,47:32:98:0.480:2	./.	./.	./.
chr5	32786389	rs2270915	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,33:32:75:0.440:2	0/1:55,53:31:108:0.491:2	./.	0/1:71,48:32:119:0.403:2	0/1:60,80:32:140:0.571:2
chr5	32789852	rs1173756	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,5:30:13:0.385:2	0/1:46,48:30:94:0.511:2	./.	0/1:0,91:29:91:1.00:2	0/1:62,47:30:109:0.431:2	0/1:62,58:30:120:0.483:2	0/1:58,41:31:99:0.414:2	0/1:39,39:30:78:0.500:2	0/1:1,114:29:115:0.991:2
chr5	32790084	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:123,4:31:127:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr5	32790616	rs1345597	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,14:29:24:0.583:2	0/1:12,18:29:30:0.600:2	0/1:15,9:30:24:0.375:2	0/1:11,4:30:15:0.267:2	0/1:12,15:28:27:0.556:2
chr5	32790918	rs73073697	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,32:32:73:0.438:2	./.	0/1:2,76:32:78:0.974:2	./.	./.	./.	./.	0/1:66,46:32:112:0.411:2
chr5	32791117	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,34:33:85:0.400:2	./.	./.
chr5	33448792	rs141305584	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,63:32:146:0.432:2	./.	./.	./.
chr5	33459887	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:31:85:0.047:2	./.	./.	./.	./.
chr5	33461086	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:106,4:30:110:0.036:2	./.	./.	./.	./.	./.	./.
chr5	33461355	rs2270905	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:33:4:1.00:2	./.	0/1:11,11:33:22:0.500:2	./.	0/1:0,17:32:17:1.00:2	0/1:39,27:33:66:0.409:2	0/1:0,85:33:85:1.00:2	./.	0/1:51,46:33:97:0.474:2
chr5	33462212	rs138936240	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,15:31:32:0.469:2	./.	./.	./.	./.	./.	./.
chr5	33462301	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:32:92:0.043:2
chr5	33535060	rs25754	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:31:6:0.667:2	0/1:18,21:31:39:0.538:2	0/1:17,16:30:33:0.485:2	0/1:20,26:30:46:0.565:2	./.	0/1:22,19:31:41:0.463:2	0/1:21,18:32:39:0.462:2	0/1:19,15:31:34:0.441:2	0/1:0,46:31:46:1.00:2
chr5	33549350	rs112196098	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,26:32:56:0.464:2
chr5	33549374	rs77581578	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,27:30:59:0.466:2
chr5	33549387	rs61748195	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,27:31:62:0.435:2	./.	0/1:30,18:32:48:0.375:2	./.	./.	./.	./.	0/1:27,25:32:52:0.481:2
chr5	33576602	rs3813474	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,162:30:167:0.970:2	./.	./.	0/1:74,95:30:169:0.562:2	0/1:82,86:31:168:0.512:2	0/1:83,85:30:168:0.506:2	./.
chr5	33643567	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:32:73:0.055:2	./.	./.	./.	./.	./.
chr5	33891937	rs80136265	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,66:31:148:0.446:2
chr5	33937977	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:28:76:0.053:2	./.
chr5	33947367	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:31:117:0.034:2	./.	./.	./.	./.	./.
chr5	33951693	rs16891982	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:32:26:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,3:33:3:1.00:2	0/1:10,14:32:24:0.583:2	0/1:2,13:32:15:0.867:2	0/1:0,23:32:23:1.00:2	0/1:0,10:32:10:1.00:2	0/1:1,24:33:25:0.960:2	0/1:6,4:33:10:0.400:2	0/1:0,12:33:12:1.00:2	0/1:15,9:33:25:0.375:2
chr5	33954511	rs2287949	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,163:31:163:1.00:2	0/1:0,87:29:87:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,187:30:187:1.00:2	0/1:4,188:30:192:0.979:2	0/1:0,181:30:181:1.00:2	0/1:2,183:31:185:0.989:2	0/1:1,189:30:190:0.995:2	0/1:98,92:30:190:0.484:2	0/1:0,182:30:182:1.00:2	0/1:0,170:30:170:1.00:2
chr5	33963870	rs26722	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,69:32:146:0.473:2	./.	./.	./.	./.	./.	./.	./.
chr5	33989518	rs2278008	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,186:32:186:1.00:2	0/1:0,119:32:119:1.00:2	0/1:16,17:31:33:0.515:2	./.	0/1:3,185:31:188:0.984:2	0/1:0,189:31:189:1.00:2	0/1:1,188:31:189:0.995:2	0/1:1,182:31:183:0.995:2	0/1:2,186:32:188:0.989:2	0/1:0,194:31:194:1.00:2	0/1:0,187:31:187:1.00:2
chr5	33998768	rs34677	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,103:31:180:0.575:2	./.	0/1:1,136:32:137:0.993:2	./.	./.
chr5	33998883	rs2287939	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,99:31:99:1.00:2	0/1:0,57:31:57:1.00:2	./.	./.	0/1:0,68:30:68:1.00:2	0/1:1,123:30:124:0.992:2	0/1:0,65:31:65:1.00:2	0/1:0,113:31:114:1.00:2	0/1:0,117:32:117:1.00:2	0/1:0,99:31:99:1.00:2	0/1:67,64:31:131:0.489:2
chr5	34004707	rs10941112	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,182:31:185:0.989:2	0/1:0,108:31:108:1.00:2	./.	./.	0/1:3,188:31:191:0.984:2	0/1:0,180:31:180:1.00:2	0/1:98,98:32:196:0.500:2	0/1:2,192:32:194:0.990:2	./.	0/1:1,185:31:186:0.995:2	./.
chr5	34008100	rs3195676	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,35:32:35:1.00:2	0/1:0,36:31:36:1.00:2	./.	./.	0/1:0,54:30:54:1.00:2	0/1:0,64:31:64:1.00:2	0/1:18,24:31:42:0.571:2	0/1:1,56:31:57:0.982:2	./.	0/1:0,45:31:45:1.00:2	./.
chr5	34757666	rs17521570	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,16:30:31:0.516:2	./.	./.	./.	./.	./.
chr5	34807928	rs6895634	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,105:31:108:0.972:2	0/1:0,64:32:64:1.00:2	0/1:0,11:31:11:1.00:2	0/1:64,56:31:120:0.467:2	0/1:0,76:31:76:1.00:2	./.	./.	./.	0/1:64,67:32:131:0.511:2	0/1:0,97:32:97:1.00:2	0/1:0,145:31:145:1.00:2
chr5	34811131	rs35607113	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,44:32:134:0.328:2
chr5	34811137	rs2271522	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,134:33:136:0.985:2	0/1:0,69:33:69:1.00:2	0/1:0,18:33:18:1.00:2	0/1:1,119:33:120:0.992:2	0/1:0,83:33:83:1.00:2	./.	0/1:65,45:33:110:0.409:2	./.	0/1:79,85:33:164:0.518:2	0/1:0,108:33:108:1.00:2	./.
chr5	34818912	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:32:197:0.020:2	./.
chr5	34824555	rs1048944	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,10:34:11:0.909:2	0/1:0,13:33:13:1.00:2	0/1:0,4:30:4:1.00:2	0/1:4,4:31:8:0.500:2	0/1:0,22:31:22:1.00:2	./.	./.	./.	0/1:7,6:33:13:0.462:2	0/1:0,12:31:12:1.00:2	0/1:19,10:33:29:0.345:2
chr5	34830788	rs17523026	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,32:31:79:0.405:2	./.
chr5	34840841	rs6451173	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,9:29:20:0.450:2	0/1:96,60:29:156:0.385:2	./.	./.	0/1:94,90:30:184:0.489:2	0/1:0,189:29:189:1.00:2	0/1:89,81:30:170:0.476:2	0/1:0,169:30:169:1.00:2	0/1:69,70:30:139:0.504:2
chr5	34863034	rs3906383	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,55:33:131:0.420:2
chr5	34908877	rs1805327	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,88:32:197:0.449:2	./.	./.	./.	0/1:114,82:32:196:0.418:2
chr5	34908925	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,6:30:163:0.037:2	./.
chr5	34908931	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:32:174:0.023:2	./.	0/1:150,6:26:156:0.038:2	./.
chr5	34915948	rs2069465	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,51:30:113:0.451:2	./.	./.	./.	0/1:51,45:29:96:0.469:2
chr5	34918496	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:131,4:34:135:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr5	34941201	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:32:199:0.020:2	./.
chr5	34945122	rs17304200	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,25:31:57:0.439:2	./.	./.	./.	0/1:83,41:31:124:0.331:2
chr5	34949719	rs181888042	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,45:32:102:0.441:2	./.	./.	./.	./.	./.	./.
chr5	34954079	rs17244979	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,35:33:91:0.385:2	./.	./.	./.	0/1:66,50:33:116:0.431:2
chr5	34954770	rs35999194	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,80:33:146:0.548:2	./.	./.	./.	./.
chr5	34998877	rs16899974	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,21:31:46:0.457:2	0/1:47,49:31:96:0.510:2	./.	./.	./.	./.	0/1:35,50:32:85:0.588:2
chr5	34998894	rs17245714	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,29:29:50:0.580:2	./.	./.	./.	./.
chr5	35010138	rs466067	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,98:32:98:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,115:32:115:1.00:2	0/1:1,73:32:74:0.986:2	0/1:0,95:32:95:1.00:2	0/1:1,111:32:112:0.991:2	0/1:1,116:33:117:0.991:2	0/1:0,123:33:123:1.00:2	0/1:0,86:32:86:1.00:2	0/1:3,122:32:125:0.976:2
chr5	35033605	rs180749	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:32:70:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,83:31:83:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,62:30:62:1.00:2	0/1:2,44:31:46:0.957:2	0/1:0,80:30:80:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,51:31:51:1.00:2	0/1:1,54:31:55:0.982:2
chr5	35037115	rs37369	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,45:31:93:0.484:2	./.	./.	./.	./.	./.
chr5	35037135	rs61742512	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,51:31:93:0.548:2	./.	./.	./.	./.	./.	./.
chr5	35039437	rs2279651	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,7:32:11:0.636:2	0/1:38,21:32:59:0.356:2	0/1:34,23:31:57:0.404:2	0/1:61,32:32:93:0.344:2	0/1:40,20:33:60:0.333:2	0/1:2,63:32:65:0.969:2	0/1:29,37:34:66:0.561:2	0/1:31,19:33:50:0.380:2	./.
chr5	35039486	rs37370	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,115:32:116:0.991:2	0/1:0,67:31:67:1.00:2	0/1:0,16:31:16:1.00:2	0/1:1,89:31:90:0.989:2	0/1:0,64:31:64:1.00:2	0/1:67,50:31:117:0.427:2	0/1:1,84:31:86:0.988:2	0/1:0,109:31:109:1.00:2	0/1:0,110:32:110:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,114:32:114:1.00:2
chr5	35084647	rs2228482	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,83:29:186:0.446:2	./.	./.	./.	./.	./.
chr5	35641582	rs6897513	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,38:31:62:0.613:2	0/1:16,15:32:31:0.484:2	./.	./.	./.	0/1:26,43:31:69:0.623:2	0/1:2,58:31:60:0.967:2	0/1:37,30:32:67:0.448:2	0/1:25,25:32:50:0.500:2	./.	./.
chr5	35644621	rs7706444	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,43:29:43:1.00:2	0/1:0,29:29:29:1.00:2	./.	./.	0/1:8,21:29:29:0.724:2	0/1:0,42:28:42:1.00:2	0/1:2,20:29:22:0.909:2	0/1:24,7:28:31:0.226:2	0/1:26,27:30:53:0.509:2	./.	./.
chr5	35654711	rs2270558	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,22:32:46:0.478:2	0/1:26,13:32:39:0.333:2	./.	./.	./.	0/1:33,20:31:53:0.377:2	0/1:1,61:31:62:0.984:2	0/1:32,36:32:68:0.529:2	0/1:48,42:32:90:0.467:2	./.	./.
chr5	35667292	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,4:33:113:0.035:2	./.	./.	./.	./.	./.	./.
chr5	35670303	rs34708521	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,33:30:63:0.524:2	./.	./.	./.
chr5	35691247	rs185000070	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,52:32:104:0.500:2	./.	./.	./.
chr5	35692775	rs7710284	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,72:32:150:0.483:2	./.	./.	./.
chr5	35695915	rs62351876	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,10:34:31:0.323:2	./.	./.	./.
chr5	35697804	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:32:90:0.044:2	./.	./.	./.	./.
chr5	35700598	rs6451206	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,19:31:22:0.864:2	./.	./.	0/1:0,8:31:8:1.00:2	0/1:0,16:30:16:1.00:2	0/1:2,9:30:11:0.818:2	0/1:4,6:32:10:0.600:2	0/1:5,3:31:8:0.375:2	0/1:2,4:31:6:0.667:2	0/1:0,12:31:12:1.00:2	0/1:0,10:29:10:1.00:2
chr5	35709095	rs13170082	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,83:32:83:1.00:2	0/1:0,63:32:64:1.00:2	0/1:0,15:29:15:1.00:2	0/1:1,95:30:96:0.990:2	0/1:0,70:30:70:1.00:2	0/1:45,41:31:86:0.477:2	0/1:45,33:31:78:0.423:2	0/1:0,73:31:73:1.00:2	0/1:40,44:31:84:0.524:2	0/1:0,67:31:67:1.00:2	0/1:0,106:31:107:1.00:2
chr5	35709184	rs13170390	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,117:32:117:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,22:32:22:1.00:2	0/1:1,133:32:134:0.993:2	0/1:0,83:31:83:1.00:2	0/1:69,71:33:140:0.507:2	0/1:76,47:32:123:0.382:2	0/1:0,119:32:119:1.00:2	0/1:74,82:34:156:0.526:2	0/1:0,117:32:117:1.00:2	0/1:0,166:32:166:1.00:2
chr5	35727783	rs116248955	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,3:33:12:0.250:2	./.
chr5	35792549	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:107,6:30:113:0.053:2	./.	./.	./.	./.	./.	./.
chr5	35806960	rs147968150	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,32:29:82:0.390:2	./.	./.	./.	./.
chr5	35861068	rs1494558	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,78:32:165:0.473:2	0/1:83,44:31:127:0.346:2	0/1:8,6:33:14:0.429:2	0/1:0,178:32:179:1.00:2	0/1:100,87:32:187:0.465:2	0/1:1,160:32:161:0.994:2	0/1:110,57:32:167:0.341:2	0/1:0,161:32:161:1.00:2	0/1:88,94:33:182:0.516:2	0/1:93,72:32:165:0.436:2	0/1:0,151:32:151:1.00:2
chr5	35871190	rs1494555	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,39:31:89:0.438:2	0/1:25,18:32:43:0.419:2	0/1:10,4:32:14:0.286:2	0/1:1,120:31:121:0.992:2	0/1:47,27:32:74:0.365:2	0/1:1,102:31:103:0.990:2	0/1:64,32:32:96:0.333:2	0/1:0,102:32:102:1.00:2	0/1:77,65:32:142:0.458:2	0/1:68,49:31:117:0.419:2	0/1:0,121:31:121:1.00:2
chr5	35871273	rs2228141	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,34:33:77:0.442:2	0/1:22,23:30:45:0.511:2	./.	./.	./.	0/1:40,43:31:83:0.518:2	./.	0/1:54,38:32:92:0.413:2	0/1:56,47:33:103:0.456:2	./.	./.
chr5	35874575	rs6897932	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,86:32:194:0.443:2	./.	0/1:98,90:31:188:0.479:2	0/1:118,73:32:191:0.382:2	./.	./.	./.	0/1:2,175:32:177:0.989:2
chr5	35875622	.	C	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,5:30:115:0.043:2	./.	./.	./.	./.	0/1:119,7:24:126:0.056:2	0/1:99,5:27:105:0.048:2	./.	./.	./.	0/1:149,7:26:156:0.045:2
chr5	35876251	rs41270321	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,25:30:50:0.500:2	0/1:20,15:30:35:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	35876274	rs3194051	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:27:8:0.375:2	0/1:49,32:28:81:0.395:2	0/1:44,32:29:76:0.421:2	./.	./.	0/1:41,47:29:88:0.534:2	./.	0/1:23,43:29:66:0.652:2	./.
chr5	35904674	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:32:110:0.036:2
chr5	35910529	rs1445898	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,40:32:82:0.488:2	0/1:0,35:32:35:1.00:2	0/1:55,30:32:85:0.353:2	0/1:40,18:32:58:0.310:2	./.	0/1:60,38:34:98:0.388:2	./.	0/1:1,96:33:97:0.990:2
chr5	35965529	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,5:29:142:0.035:2	./.	./.	./.
chr5	35965768	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,4:29:64:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr5	35965970	rs3756669	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,5:33:14:0.357:2	./.	./.	./.
chr5	36049146	rs371024924	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:138,4:32:142:0.028:2	./.	./.	./.	0/1:126,4:31:130:0.031:2	./.	./.	./.
chr5	36049153	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:133,4:32:137:0.029:2	./.	./.	./.	0/1:121,4:31:125:0.032:2	./.	./.	./.
chr5	36105254	rs139248479	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,27:32:63:0.429:2	./.	./.	./.	./.	./.	./.
chr5	36116688	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:33:88:0.045:2	./.
chr5	36142648	rs12658867	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:19,16:33:35:0.457:2	0/1:7,12:33:19:0.632:2	0/1:0,2:34:2:1.00:2	./.	0/1:41,37:33:78:0.474:2	0/1:28,30:33:58:0.517:2	0/1:33,33:32:66:0.500:2	./.	./.	0/1:18,22:33:40:0.550:2	0/1:47,30:33:77:0.390:2
chr5	36143370	rs146504133	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,72:34:163:0.442:2	./.	./.
chr5	36143392	rs267766	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:93,51:30:144:0.354:2	0/1:61,27:31:88:0.307:2	0/1:0,19:30:19:1.00:2	./.	0/1:74,53:30:127:0.417:2	0/1:64,64:30:128:0.500:2	0/1:58,46:30:104:0.442:2	./.	./.	0/1:89,55:30:144:0.382:2	0/1:81,66:31:147:0.449:2
chr5	36171780	rs61755301	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:53,50:31:103:0.485:2	0/1:51,34:31:85:0.400:2	./.	./.	./.	./.	./.	0/1:54,64:30:118:0.542:2	0/1:63,68:31:131:0.519:2	./.	./.
chr5	36177046	rs79521169	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,17:32:34:0.500:2	./.	./.	./.	./.	./.	./.
chr5	36183991	.	T	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:171,7:32:178:0.039:2	./.	./.	./.	./.	./.	0/1:154,8:30:162:0.049:2	0/1:180,6:30:187:0.032:2
chr5	36183992	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:172,7:32:179:0.039:2	./.	./.	./.	./.	./.	0/1:153,8:30:161:0.050:2	0/1:184,6:31:190:0.032:2
chr5	36251596	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:32:123:0.033:2	./.	./.	./.
chr5	36269551	rs1035480	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:34:90:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,98:33:98:1.00:2	0/1:1,69:33:70:0.986:2	0/1:0,100:32:100:1.00:2	0/1:0,76:33:76:1.00:2	0/1:0,113:33:113:1.00:2	0/1:0,108:34:108:1.00:2	0/1:0,89:33:89:1.00:2	0/1:2,112:33:114:0.982:2
chr5	36629582	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,40:31:85:0.471:2	./.
chr5	36677083	rs2032892	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,24:31:68:0.353:2	./.	./.	./.	./.	./.	./.	./.
chr5	36677218	rs139659178	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,48:32:114:0.421:2	./.	./.	./.	./.
chr5	37036492	rs61748200	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,29:33:69:0.420:2	./.	0/1:43,33:32:76:0.434:2	./.	0/1:53,54:33:107:0.505:2	./.	0/1:32,21:34:53:0.396:2	0/1:59,29:32:88:0.330:2
chr5	37138936	rs147426388	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,7:32:22:0.318:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	37154040	rs201122718	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,77:30:166:0.464:2	./.	./.	./.	./.	./.	./.	./.
chr5	37169169	rs143147192	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,66:32:149:0.443:2	./.	./.	./.	./.
chr5	37182862	rs149313666	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,5:33:17:0.294:2	0/1:9,8:33:17:0.471:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	37196028	rs72736758	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,65:31:144:0.451:2
chr5	37294473	rs1045908	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,50:33:106:0.472:2	0/1:39,32:32:71:0.451:2	0/1:52,51:32:103:0.495:2	./.	0/1:57,54:33:111:0.486:2	./.	0/1:49,38:33:88:0.437:2	0/1:0,166:33:166:1.00:2
chr5	37333727	rs150594	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,23:31:48:0.479:2	./.	./.	./.	./.	./.	./.	./.
chr5	37364443	rs217852	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,106:31:106:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,22:30:22:1.00:2	0/1:1,122:30:123:0.992:2	0/1:0,68:30:68:1.00:2	0/1:0,136:30:136:1.00:2	0/1:0,105:30:105:1.00:2	0/1:0,149:30:149:1.00:2	0/1:0,143:32:143:1.00:2	0/1:0,117:31:117:1.00:2	0/1:0,152:31:152:1.00:2
chr5	38350643	rs2561111	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:58,44:32:102:0.431:2	0/1:26,34:32:60:0.567:2	./.	0/1:67,41:32:108:0.380:2	0/1:60,79:31:139:0.568:2	./.	./.	./.	./.	./.	0/1:75,45:32:120:0.375:2
chr5	38352386	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:33:116:0.034:2	./.
chr5	38370537	rs1465567	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,8:30:31:0.258:2	0/1:19,21:29:40:0.525:2	0/1:20,20:28:40:0.500:2	./.	0/1:30,13:30:43:0.302:2	./.	./.
chr5	38407005	rs371899172	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,47:31:88:0.534:2
chr5	38407060	rs138323038	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,62:30:123:0.504:2	./.	./.	./.	./.	./.
chr5	38412674	rs16903965	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:37,14:33:51:0.275:2	0/1:13,13:32:26:0.500:2	./.	./.	./.	./.	0/1:41,26:32:67:0.388:2	./.	./.	./.	./.
chr5	38486065	rs3110234	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,72:32:72:1.00:2	0/1:1,26:32:27:0.963:2	./.	./.	0/1:42,26:31:68:0.382:2	./.	./.	./.	./.	./.	./.
chr5	38511997	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:33:196:0.020:2
chr5	38884071	rs34675408	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,69:32:153:0.451:2	./.	./.	./.	./.	./.	./.
chr5	38884151	rs146887040	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,87:33:189:0.463:2	0/1:52,65:32:117:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	38885506	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,4:30:58:0.069:2	./.	./.	./.	./.	./.	./.
chr5	38917669	rs34324145	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,37:32:82:0.451:2	./.	./.
chr5	38919095	rs147042111	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,62:32:121:0.512:2	./.	./.	./.	./.
chr5	38919136	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:33:118:0.034:2	./.
chr5	38919158	rs10941412	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,39:33:94:0.415:2	0/1:26,24:32:50:0.480:2	./.	./.	./.	0/1:0,88:31:88:1.00:2	./.	0/1:52,64:32:116:0.552:2	./.	0/1:53,48:32:101:0.475:2	0/1:57,53:32:110:0.482:2
chr5	38921829	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:32:192:0.021:2	./.	./.	./.
chr5	38925442	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:34:183:0.022:2	./.	./.	./.	./.
chr5	38933455	rs142014556	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,45:31:104:0.433:2	0/1:29,34:32:63:0.540:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	38949977	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,5:33:165:0.030:2	./.	./.	./.	./.
chr5	38950776	rs2115949	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,109:30:109:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,13:29:13:1.00:2	0/1:0,103:30:104:1.00:2	0/1:0,85:30:85:1.00:2	0/1:0,124:30:125:1.00:2	0/1:0,81:30:82:1.00:2	0/1:0,136:30:136:1.00:2	0/1:0,135:30:135:1.00:2	0/1:0,132:30:132:1.00:2	0/1:0,134:30:136:1.00:2
chr5	38955796	rs2043112	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,66:31:66:1.00:2	0/1:2,43:32:45:0.956:2	./.	0/1:43,36:30:79:0.456:2	0/1:34,21:32:55:0.382:2	0/1:44,41:30:85:0.482:2	0/1:32,29:32:61:0.475:2	./.	./.	0/1:1,65:31:66:0.985:2	0/1:44,44:32:88:0.500:2
chr5	38957820	rs41271103	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,28:30:67:0.418:2	./.	./.	0/1:48,42:31:90:0.467:2
chr5	39108309	rs377022	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:33:74:1.00:2	0/1:0,50:33:50:1.00:2	0/1:13,6:33:19:0.316:2	0/1:50,45:33:95:0.474:2	0/1:48,40:32:88:0.455:2	0/1:0,120:32:120:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,125:33:125:1.00:2	0/1:0,107:32:107:1.00:2	0/1:0,132:33:132:1.00:2
chr5	39108322	rs430630	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:31:71:1.00:2	0/1:0,44:30:44:1.00:2	0/1:12,6:30:18:0.333:2	0/1:0,91:30:91:1.00:2	0/1:0,82:29:82:1.00:2	0/1:0,120:29:120:1.00:2	0/1:0,97:29:97:1.00:2	0/1:0,126:30:126:1.00:2	0/1:0,125:30:125:1.00:2	0/1:0,111:30:111:1.00:2	0/1:0,129:30:129:1.00:2
chr5	39119723	rs379707	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,52:32:103:0.505:2	0/1:26,25:32:51:0.490:2	./.	0/1:81,55:31:136:0.404:2	0/1:50,48:31:98:0.490:2	0/1:104,55:31:159:0.346:2	0/1:62,55:31:117:0.470:2	0/1:0,74:31:74:1.00:2	0/1:1,148:32:149:0.993:2	0/1:1,83:32:84:0.988:2	0/1:119,65:32:184:0.353:2
chr5	39141191	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,41:33:107:0.383:2	./.	./.
chr5	39141240	rs3188386	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,76:31:135:0.563:2	0/1:60,24:31:85:0.286:2	0/1:10,14:29:24:0.583:2	0/1:127,69:30:196:0.352:2	0/1:103,95:32:198:0.480:2	./.	./.	./.	./.	./.	0/1:124,70:32:194:0.361:2
chr5	39331786	rs13361416	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,41:32:101:0.406:2	./.	./.	0/1:62,62:32:124:0.500:2	./.	./.
chr5	39331859	rs76184752	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,65:28:160:0.406:2	./.	./.	./.	./.
chr5	39331894	rs34882957	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:33:178:0.022:2
chr5	39364554	rs700233	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:32:6:0.500:2	0/1:10,8:33:18:0.444:2	0/1:1,23:31:24:0.958:2	0/1:12,11:32:23:0.478:2	0/1:0,25:32:25:1.00:2	./.	0/1:11,5:29:16:0.313:2	0/1:16,9:34:25:0.360:2	./.
chr5	39376988	rs3733801	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,39:32:68:0.574:2	./.	./.	./.	./.	0/1:23,31:32:54:0.574:2	./.	./.
chr5	39382954	rs376241492	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:33:51:0.078:2	./.
chr5	39383121	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,4:30:31:0.129:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	40681692	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,30:32:58:0.517:2	./.	./.	./.
chr5	40841741	rs10512747	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,41:30:88:0.471:2	./.	./.	0/1:43,41:31:84:0.488:2	./.	./.	./.	0/1:52,93:31:145:0.641:2
chr5	40852451	rs188934	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:30:90:1.00:2	0/1:0,52:29:52:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,88:30:88:1.00:2	0/1:0,51:28:51:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,52:29:52:1.00:2	0/1:0,84:29:84:1.00:2	0/1:0,86:30:86:1.00:2	0/1:0,82:29:82:1.00:2	0/1:0,93:30:93:1.00:2
chr5	40853048	rs16870407	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,39:30:113:0.348:2	./.	./.	./.
chr5	40955561	rs1063499	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,18:32:37:0.486:2	0/1:10,6:31:16:0.375:2	0/1:5,3:31:8:0.375:2	0/1:0,33:33:33:1.00:2	0/1:5,15:33:20:0.750:2	./.	0/1:0,24:33:24:1.00:2	0/1:29,21:32:50:0.420:2	0/1:0,41:34:41:1.00:2	0/1:15,30:32:45:0.667:2	0/1:13,22:33:35:0.629:2
chr5	40964852	rs13157656	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,6:31:10:0.600:2	0/1:75,58:31:133:0.436:2	./.	./.	0/1:47,27:32:74:0.365:2	./.	./.	./.	0/1:91,51:33:142:0.359:2
chr5	40964885	rs60714178	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:90,72:32:162:0.444:2	0/1:46,28:32:74:0.378:2	0/1:6,5:32:11:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	40998196	rs704040	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,32:33:59:0.542:2	0/1:24,13:33:37:0.351:2	0/1:4,4:32:8:0.500:2	0/1:0,47:33:47:1.00:2	0/1:23,18:31:41:0.439:2	0/1:1,64:32:65:0.985:2	0/1:30,18:32:48:0.375:2	0/1:0,61:31:62:1.00:2	0/1:36,33:32:69:0.478:2	0/1:0,45:33:45:1.00:2	0/1:26,30:33:56:0.536:2
chr5	40998235	rs722575	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,42:32:42:1.00:2	0/1:25,19:32:44:0.432:2	0/1:36,30:31:66:0.455:2	0/1:37,19:32:56:0.339:2	0/1:0,52:31:52:1.00:2	0/1:29,30:32:59:0.508:2	0/1:0,45:32:45:1.00:2	0/1:21,22:32:43:0.512:2
chr5	41000343	rs1001420	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,36:30:80:0.450:2	0/1:29,13:31:42:0.310:2	0/1:2,10:30:12:0.833:2	0/1:0,98:30:98:1.00:2	0/1:59,27:30:86:0.314:2	0/1:0,67:29:67:1.00:2	0/1:58,37:30:95:0.389:2	0/1:0,93:30:93:1.00:2	0/1:77,34:31:111:0.306:2	0/1:0,69:31:69:1.00:2	0/1:68,58:30:126:0.460:2
chr5	41008780	rs2271704	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,36:32:90:0.400:2	0/1:32,19:32:51:0.373:2	0/1:7,3:30:10:0.300:2	0/1:0,108:32:108:1.00:2	0/1:1,111:31:112:0.991:2	0/1:38,57:31:95:0.600:2	0/1:2,132:32:134:0.985:2	0/1:2,151:31:153:0.987:2	0/1:0,101:33:101:1.00:2	0/1:0,86:31:86:1.00:2	0/1:0,89:30:89:1.00:2
chr5	41018036	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:32:79:0.051:2	./.	./.	./.	./.
chr5	41018452	rs10054110	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:29,44:33:73:0.603:2	0/1:19,28:33:47:0.596:2	./.	./.	0/1:20,20:30:40:0.500:2	./.	0/1:33,27:32:60:0.450:2	./.	0/1:36,25:32:61:0.410:2	./.	0/1:52,49:33:101:0.485:2
chr5	41033163	rs10067611	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,67:32:155:0.432:2	0/1:70,38:32:108:0.352:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	41033931	rs10434576	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:44,25:32:69:0.362:2	0/1:26,16:32:42:0.381:2	./.	0/1:70,4:29:74:0.054:2	./.	0/1:52,19:31:71:0.268:2	0/1:34,20:31:54:0.370:2	0/1:0,59:31:59:1.00:2	0/1:68,30:32:98:0.306:2	./.	./.
chr5	41033992	rs67027762	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:31:13:0.308:2	./.	0/1:51,21:30:72:0.292:2	./.	0/1:51,41:30:92:0.446:2	./.	./.	./.	0/1:88,34:30:123:0.279:2
chr5	41042284	rs325854	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,18:33:46:0.391:2	0/1:7,5:32:12:0.417:2	0/1:0,3:31:3:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,42:31:42:1.00:2	0/1:4,8:31:12:0.667:2	0/1:1,37:32:38:0.974:2	0/1:0,37:33:37:1.00:2	0/1:18,16:32:34:0.471:2	0/1:0,40:32:40:1.00:2
chr5	41048533	rs13173930	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,41:32:44:0.932:2	0/1:1,22:31:23:0.957:2	0/1:22,20:32:42:0.476:2	./.	0/1:0,40:32:41:1.00:2	0/1:23,17:32:40:0.425:2	0/1:21,15:33:36:0.417:2	0/1:28,28:33:56:0.500:2
chr5	41049389	rs325863	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,48:30:100:0.480:2	0/1:30,19:28:49:0.388:2	0/1:0,28:30:28:1.00:2	0/1:0,104:30:104:1.00:2	0/1:1,81:30:82:0.988:2	0/1:0,105:30:105:1.00:2	0/1:1,69:30:70:0.986:2	0/1:0,112:30:112:1.00:2	0/1:0,95:31:95:1.00:2	0/1:0,67:31:67:1.00:2	0/1:2,108:30:110:0.982:2
chr5	41049397	rs325864	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,51:31:103:0.495:2	0/1:27,21:31:48:0.438:2	0/1:0,29:31:29:1.00:2	0/1:0,113:31:113:1.00:2	0/1:0,93:31:93:1.00:2	0/1:0,109:31:109:1.00:2	0/1:1,79:31:81:0.988:2	0/1:0,116:31:116:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,69:32:69:1.00:2	0/1:1,120:31:121:0.992:2
chr5	41049410	rs116584060	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,27:31:88:0.310:2	./.	./.	0/1:38,44:32:82:0.537:2	./.
chr5	41051142	rs6893131	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,46:30:139:0.331:2	./.	./.	./.	./.	./.
chr5	41054893	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,33:33:98:0.337:2	0/1:36,11:31:47:0.234:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	41054934	rs325874	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,45:33:71:0.634:2	0/1:13,23:32:36:0.639:2	./.	./.	./.	0/1:52,29:33:81:0.358:2	./.	./.	0/1:32,32:33:64:0.500:2	./.	./.
chr5	41058267	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,17:31:37:0.459:2	./.
chr5	41061715	rs1023840	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,39:32:77:0.506:2	./.	./.	./.	0/1:77,54:33:131:0.412:2
chr5	41061716	rs865093	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,41:29:78:0.526:2	0/1:19,26:29:45:0.578:2	0/1:1,7:30:8:0.875:2	0/1:0,84:29:84:1.00:2	0/1:0,75:29:75:1.00:2	0/1:0,101:30:101:1.00:2	0/1:1,76:31:77:0.987:2	0/1:0,102:29:102:1.00:2	0/1:0,77:30:77:1.00:2	0/1:0,66:29:66:1.00:2	0/1:0,130:30:130:1.00:2
chr5	41067259	rs139046598	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,24:33:51:0.480:2	./.
chr5	41069852	rs13174484	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,49:32:130:0.380:2	0/1:0,51:32:51:1.00:2	./.	./.	0/1:3,108:32:111:0.973:2	0/1:94,72:33:166:0.434:2	0/1:57,60:32:117:0.513:2	0/1:108,68:32:176:0.386:2
chr5	41158863	rs6866352	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:32:72:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,72:32:73:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,61:32:61:1.00:2	0/1:1,71:32:72:0.986:2	0/1:0,69:32:69:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,70:32:70:1.00:2
chr5	41160293	rs62361567	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,50:28:109:0.459:2	./.	./.
chr5	41161898	rs142896559	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,52:32:94:0.553:2
chr5	41172429	rs6896011	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,54:28:109:0.495:2	./.	./.	./.	./.	./.
chr5	41186220	rs61733159	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,32:33:76:0.421:2	./.	./.	0/1:42,34:33:76:0.447:2	./.
chr5	41199959	rs1801033	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,130:32:130:1.00:2	0/1:0,100:32:100:1.00:2	0/1:72,62:32:134:0.463:2	0/1:8,138:33:146:0.945:2	0/1:2,158:32:160:0.988:2	0/1:0,139:33:139:1.00:2	0/1:0,152:33:152:1.00:2	0/1:2,134:32:136:0.985:2
chr5	41475766	rs318039	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:81,70:33:151:0.464:2	0/1:63,35:33:98:0.357:2	./.	0/1:134,56:32:190:0.295:2	./.	./.	0/1:124,45:32:169:0.266:2	0/1:192,4:35:196:0.020:2	0/1:118,49:33:167:0.293:2	./.	0/1:97,90:33:187:0.481:2
chr5	41934110	rs141675593	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,73:32:112:0.652:2	./.	./.	./.
chr5	42700044	rs6179	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,140:32:141:0.993:2	0/1:0,74:31:74:1.00:2	0/1:0,14:32:14:1.00:2	0/1:1,140:32:141:0.993:2	./.	0/1:84,55:31:139:0.396:2	0/1:83,66:31:149:0.443:2	0/1:0,178:31:178:1.00:2	0/1:99,83:32:182:0.456:2	0/1:0,113:32:113:1.00:2	0/1:0,155:31:155:1.00:2
chr5	42719239	rs6180	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,171:32:174:0.983:2	0/1:1,130:32:131:0.992:2	0/1:15,5:32:20:0.250:2	0/1:109,80:32:190:0.423:2	./.	0/1:125,75:32:200:0.375:2	0/1:115,81:33:196:0.413:2	0/1:1,184:32:185:0.995:2	./.	0/1:109,78:32:187:0.417:2	0/1:122,74:32:197:0.378:2
chr5	42719408	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,54:32:97:0.557:2	./.	./.	./.	./.	./.	./.	./.
chr5	42759301	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:33:167:0.024:2	./.	./.	./.
chr5	42800943	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:32:109:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	42801084	rs202040224	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:29:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	42801268	rs3877899	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,163:28:165:0.988:2	0/1:79,84:29:163:0.515:2	0/1:91,91:30:183:0.500:2	./.	0/1:88,83:30:172:0.485:2	./.	./.
chr5	43039793	rs1054428	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:24,22:29:46:0.478:2	0/1:19,14:30:33:0.424:2	./.	0/1:37,65:30:102:0.637:2	./.	0/1:41,41:28:82:0.500:2	./.	0/1:3,110:29:113:0.973:2	0/1:41,47:29:88:0.534:2	0/1:31,36:29:67:0.537:2	0/1:41,31:28:73:0.431:2
chr5	43040314	rs187256599	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:31:5:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	43175103	rs35397154	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,17:30:22:0.773:2	./.	./.	./.	./.	0/1:103,71:31:175:0.408:2	0/1:107,64:32:172:0.374:2	./.	./.
chr5	43245922	rs13176855	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,99:31:100:0.990:2	0/1:0,44:32:44:1.00:2	./.	0/1:0,114:31:114:1.00:2	0/1:95,80:31:175:0.457:2	0/1:62,62:30:124:0.500:2	./.	./.	./.	0/1:61,38:31:99:0.384:2	0/1:57,45:32:102:0.441:2
chr5	43294192	rs56257144	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,59:30:135:0.437:2	./.	./.	./.
chr5	43297144	rs3733769	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,83:33:86:0.965:2	0/1:1,68:32:69:0.986:2	./.	./.	0/1:57,47:32:104:0.452:2	0/1:64,73:32:137:0.533:2	./.	0/1:1,139:33:140:0.993:2	0/1:0,174:34:174:1.00:2	0/1:48,45:33:93:0.484:2	./.
chr5	43492978	rs10039298	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:32:45:1.00:2	0/1:0,32:31:33:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,60:33:60:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,58:32:58:1.00:2
chr5	43505986	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:29:78:0.051:2	./.	./.	./.	./.
chr5	43505993	rs7710628	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,36:33:94:0.383:2	0/1:33,17:32:50:0.340:2	0/1:7,5:32:12:0.417:2	0/1:46,34:32:80:0.425:2	0/1:3,73:32:76:0.961:2	0/1:42,50:31:92:0.543:2	0/1:27,54:32:81:0.667:2	0/1:42,53:33:95:0.558:2	0/1:1,96:33:97:0.990:2	0/1:47,33:32:80:0.413:2	./.
chr5	43506242	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:28:50:0.080:2	./.	./.	./.	./.
chr5	43509348	rs6872851	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:33:88:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,68:33:68:1.00:2	0/1:0,74:33:74:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,110:33:110:1.00:2
chr5	43609343	rs10057103	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,52:32:108:0.481:2	0/1:39,33:31:72:0.458:2	0/1:4,3:32:7:0.429:2	0/1:75,71:31:146:0.486:2	0/1:0,77:31:77:1.00:2	0/1:86,61:31:147:0.415:2	0/1:60,48:31:108:0.444:2	0/1:86,77:31:163:0.472:2	0/1:0,140:32:140:1.00:2	0/1:62,58:31:120:0.483:2	0/1:93,80:32:173:0.462:2
chr5	43613188	rs149285174	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,16:27:71:0.225:2	0/1:50,9:22:59:0.153:2	0/1:57,9:23:66:0.136:2	0/1:55,10:23:66:0.154:2	0/1:58,12:22:70:0.171:2	0/1:68,14:25:82:0.171:2	0/1:50,12:26:62:0.194:2	./.
chr5	43656024	rs56193661	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,59:30:148:0.399:2
chr5	43656074	rs75710404	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:31:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	43675730	rs139893206	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,31:32:63:0.492:2
chr5	43700321	rs78818665	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,74:31:130:0.574:2	./.	./.	./.	./.	./.
chr5	44809162	rs3747479	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,13:31:25:0.520:2	0/1:5,11:31:16:0.688:2	./.	0/1:0,32:31:32:1.00:2	0/1:14,8:30:22:0.364:2	0/1:13,14:30:27:0.519:2	./.	0/1:10,16:31:26:0.615:2	./.	0/1:14,11:32:25:0.440:2	0/1:13,16:31:31:0.552:2
chr5	44809446	rs61754779	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,11:29:26:0.423:2	0/1:7,9:33:16:0.563:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	44813252	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.	./.	./.	./.
chr5	45303906	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:34:64:0.063:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	45461979	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:32:157:0.025:2	./.
chr5	45462083	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:31:123:0.033:2	./.
chr5	49698180	rs13172025	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,188:31:188:1.00:2	0/1:0,150:31:150:1.00:2	0/1:0,43:30:43:1.00:2	0/1:135,64:30:199:0.322:2	0/1:121,76:30:197:0.386:2	./.	0/1:123,74:30:197:0.376:2	./.	./.	./.	0/1:126,70:32:196:0.357:2
chr5	49706784	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:32:173:0.023:2	./.	./.	0/1:164,7:33:171:0.041:2	./.	./.
chr5	50045967	rs2442107	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,14:33:33:0.424:2	0/1:7,4:31:11:0.364:2	./.	0/1:16,5:31:21:0.238:2	0/1:5,5:33:10:0.500:2	0/1:0,22:30:22:1.00:2	./.	0/1:0,16:32:16:1.00:2	0/1:0,13:32:13:1.00:2	0/1:19,9:31:28:0.321:2	0/1:0,29:31:29:1.00:2
chr5	50057729	rs282547	G	A,T	.	PASS	AC=8,1;AF=0.296,0.037;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0/1:31:92:0.435:2	0/1:31:48:0.479:2	./.	0/1:31:127:0.417:2	0/1:30:42:0.452:2	0/1:31:86:1.00:2	0/2:30:69:0.377:2	0/1:32:74:1.00:2	0/1:32:86:1.00:2	./.	0/1:32:97:1.00:2
chr5	50090163	rs142224685	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:33:147:0.027:2	./.	./.
chr5	50090820	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:33:149:0.027:2	./.	./.	./.	./.
chr5	50117107	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,19:13:123:0.154:2	./.	0/1:132,12:16:144:0.083:2	./.	./.
chr5	50117112	rs202123953	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:105,19:20:124:0.153:2	./.	./.	0/1:113,13:15:126:0.103:2	0/1:103,14:16:117:0.120:2	0/1:144,14:16:159:0.089:2	0/1:104,17:12:121:0.140:2	0/1:101,21:16:122:0.172:2	0/1:136,18:19:154:0.117:2	0/1:105,23:19:129:0.180:2	0/1:101,24:22:125:0.192:2
chr5	50679550	rs150104955	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,11:31:26:0.423:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	50685505	rs2303751	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,4:29:17:0.235:2	0/1:4,3:27:7:0.429:2	./.	./.	./.	0/1:9,4:26:13:0.308:2	./.	./.
chr5	52096889	rs1499280	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:31:35:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,26:31:26:1.00:2	0/1:24,20:32:44:0.455:2	0/1:0,53:31:53:1.00:2	0/1:1,53:32:54:0.981:2	0/1:0,59:32:59:1.00:2	0/1:0,44:32:44:1.00:2
chr5	52157374	rs2447867	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,50:30:96:0.521:2	0/1:22,17:29:39:0.436:2	0/1:0,6:28:6:1.00:2	0/1:0,75:30:75:1.00:2	0/1:3,54:28:57:0.947:2	0/1:1,84:30:85:0.988:2	0/1:23,33:30:56:0.589:2	0/1:37,35:30:72:0.486:2	0/1:0,94:31:94:1.00:2	0/1:40,32:30:72:0.444:2	0/1:0,111:29:111:1.00:2
chr5	52193287	rs1531545	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:31:10:0.400:2	0/1:24,25:32:49:0.510:2	0/1:33,17:31:50:0.340:2	0/1:32,19:31:51:0.373:2	0/1:19,24:31:43:0.558:2	0/1:41,28:32:69:0.406:2	./.	0/1:24,28:31:52:0.538:2	0/1:36,28:32:64:0.438:2
chr5	52201722	rs4145748	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,36:31:67:0.537:2	./.	./.	./.
chr5	52214581	rs2279587	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,31:31:110:0.282:2	./.	./.	./.
chr5	52218694	rs61748764	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,14:31:35:0.400:2	0/1:6,9:32:15:0.600:2	./.	0/1:21,25:31:46:0.543:2	0/1:13,3:31:16:0.188:2	./.	./.	./.	./.	./.	./.
chr5	52229745	rs12520591	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,34:32:64:0.531:2	./.	./.	./.
chr5	52243261	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2	./.	./.
chr5	52248291	rs1054085	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,40:30:73:0.548:2	0/1:10,27:29:37:0.730:2	0/1:2,3:30:5:0.600:2	0/1:32,24:29:56:0.429:2	0/1:35,23:28:58:0.397:2	0/1:43,37:29:80:0.463:2	0/1:19,27:30:46:0.587:2	0/1:19,30:29:49:0.612:2	0/1:0,72:30:72:1.00:2	0/1:24,32:30:56:0.571:2	0/1:60,54:30:114:0.474:2
chr5	52347369	rs1126643	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:31,25:32:56:0.446:2	0/1:20,16:32:36:0.444:2	0/1:8,4:32:12:0.333:2	./.	0/1:23,30:32:53:0.566:2	./.	./.	0/1:64,37:32:101:0.366:2	./.	./.	./.
chr5	52351413	rs1062535	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:50,33:33:83:0.398:2	0/1:24,25:32:49:0.510:2	0/1:7,13:30:20:0.650:2	./.	0/1:43,39:31:82:0.476:2	./.	./.	0/1:55,60:32:115:0.522:2	./.	./.	./.
chr5	52370904	rs80331976	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,20:32:42:0.476:2	0/1:19,12:31:31:0.387:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	52379277	rs2303122	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:33,17:33:51:0.340:2	0/1:20,12:32:32:0.375:2	0/1:0,3:32:3:1.00:2	./.	0/1:26,11:32:37:0.297:2	./.	./.	0/1:44,20:32:64:0.313:2	./.	./.	./.
chr5	52397199	rs2233218	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,27:31:65:0.415:2	./.	./.	./.	./.
chr5	52397311	rs2233216	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,21:32:34:0.618:2	./.	./.	./.
chr5	52398005	rs2233213	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,8:33:27:0.296:2	./.	./.	./.
chr5	52780054	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,12:29:138:0.087:2	./.	./.	./.	./.
chr5	52856504	rs2279516	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,49:32:98:0.500:2	0/1:40,22:32:62:0.355:2	./.	./.	./.	0/1:73,71:31:144:0.493:2	0/1:120,60:32:180:0.333:2	0/1:101,79:31:180:0.439:2	./.	0/1:0,93:32:93:1.00:2	0/1:2,114:31:116:0.983:2
chr5	52942083	rs31304	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,84:31:84:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,85:30:85:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,94:31:94:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,90:31:90:1.00:2	0/1:1,119:31:120:0.992:2
chr5	52942197	rs31303	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,15:32:15:1.00:2	0/1:64,58:32:122:0.475:2	./.	0/1:0,70:32:70:1.00:2	0/1:41,46:33:87:0.529:2	0/1:48,46:32:94:0.489:2	0/1:64,48:33:112:0.429:2	0/1:0,72:32:72:1.00:2	0/1:0,104:33:104:1.00:2
chr5	53606295	rs35941	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:31:68:1.00:2	0/1:0,54:32:54:1.00:2	0/1:4,6:32:10:0.600:2	0/1:1,98:32:99:0.990:2	0/1:65,35:31:100:0.350:2	0/1:0,125:32:125:1.00:2	0/1:0,101:33:101:1.00:2	0/1:0,100:32:100:1.00:2	0/1:58,62:33:120:0.517:2	0/1:0,55:31:55:1.00:2	0/1:0,95:31:95:1.00:2
chr5	53751901	rs7699	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,74:30:79:0.937:2	0/1:0,43:30:43:1.00:2	0/1:3,10:30:13:0.769:2	0/1:0,96:30:96:1.00:2	0/1:0,86:30:86:1.00:2	0/1:0,94:30:94:1.00:2	0/1:0,115:30:115:1.00:2	0/1:5,93:30:98:0.949:2	./.	0/1:32,32:30:64:0.500:2	0/1:0,81:31:82:1.00:2
chr5	53751988	rs7823	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,124:30:129:0.961:2	0/1:0,64:30:64:1.00:2	0/1:5,11:29:16:0.688:2	0/1:1,144:30:145:0.993:2	0/1:0,109:30:109:1.00:2	0/1:0,133:30:133:1.00:2	0/1:0,86:30:86:1.00:2	0/1:6,142:30:148:0.959:2	./.	0/1:41,48:31:89:0.539:2	0/1:0,161:30:161:1.00:2
chr5	53752181	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,6:34:15:0.429:2	./.	./.
chr5	53813830	rs76854460	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,3:32:3:1.00:2	0/1:0,2:29:2:1.00:2	./.	0/1:5,6:30:11:0.545:2	0/1:0,7:28:7:1.00:2	./.	./.	0/1:0,4:30:4:1.00:2	./.	0/1:0,2:30:2:1.00:2	0/1:0,10:29:10:1.00:2
chr5	53814394	rs2548614	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	0/1:0,2:32:2:1.00:2	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.
chr5	53814623	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,67:31:117:0.578:2	./.	./.	./.
chr5	53815066	rs2548613	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,47:31:118:0.398:2	./.	./.	0/1:77,70:31:147:0.476:2	0/1:86,67:30:153:0.438:2	./.	0/1:0,76:31:76:1.00:2	./.
chr5	53815240	rs61739378	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:29:8:0.500:2	./.	./.	0/1:24,23:28:47:0.489:2	./.	0/1:30,24:28:54:0.444:2	0/1:19,13:30:32:0.406:2	./.	./.
chr5	53815495	rs2548612	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,104:32:106:0.981:2	0/1:1,77:32:78:0.987:2	./.	0/1:68,72:32:140:0.514:2	0/1:0,126:32:126:1.00:2	0/1:68,58:32:126:0.460:2	0/1:65,61:32:126:0.484:2	0/1:73,61:31:134:0.455:2	./.	0/1:0,114:32:114:1.00:2	0/1:1,115:32:116:0.991:2
chr5	53815560	rs13162502	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,6:27:13:0.462:2	0/1:53,64:29:117:0.547:2	./.	./.	0/1:49,39:28:88:0.443:2	./.	0/1:58,39:29:97:0.402:2	./.	./.
chr5	53815721	rs12522213	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,45:30:45:1.00:2	0/1:0,28:31:28:1.00:2	./.	./.	0/1:1,41:30:42:0.976:2	./.	./.	./.	./.	./.	0/1:0,52:30:52:1.00:2
chr5	53815722	rs2565014	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,30:31:65:0.462:2	./.	./.	0/1:18,15:31:33:0.455:2	0/1:15,24:31:39:0.615:2	./.	0/1:0,33:32:33:1.00:2	./.
chr5	53815918	rs2910808	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,53:32:53:1.00:2	0/1:0,30:32:30:1.00:2	./.	0/1:17,26:31:43:0.605:2	0/1:0,44:32:44:1.00:2	0/1:10,24:31:34:0.706:2	0/1:23,14:32:37:0.378:2	0/1:21,18:33:39:0.462:2	./.	0/1:0,56:32:56:1.00:2	0/1:0,76:33:76:1.00:2
chr5	53815920	rs71592647	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,16:33:43:0.372:2	./.	./.	0/1:14,22:33:36:0.611:2	./.	0/1:38,24:33:62:0.387:2	./.	./.
chr5	53816341	rs11268152	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:12,3:32:15:0.200:2	./.	0/1:30,4:33:34:0.118:2	0/1:19,8:28:27:0.296:2	0/1:23,5:32:29:0.179:2	./.	0/1:25,4:33:29:0.138:2	./.	0/1:12,6:32:18:0.333:2	0/1:31,11:28:42:0.262:2
chr5	53816782	rs2564990	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:1,19:32:20:0.950:2	./.	0/1:14,12:34:26:0.462:2	0/1:0,23:30:23:1.00:2	0/1:15,11:32:26:0.423:2	0/1:16,14:33:30:0.467:2	0/1:12,13:33:25:0.520:2	./.	0/1:0,33:32:33:1.00:2	0/1:1,47:33:48:0.979:2
chr5	54403695	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:33:64:0.063:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	54403957	rs3104233	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:31:58:1.00:2	0/1:0,23:29:23:1.00:2	0/1:0,9:28:9:1.00:2	0/1:0,45:31:45:1.00:2	0/1:1,41:31:42:0.976:2	0/1:0,43:31:43:1.00:2	0/1:1,31:29:32:0.969:2	0/1:0,38:31:38:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,66:31:66:1.00:2
chr5	54404015	rs1875506	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,132:30:132:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,145:31:145:1.00:2	0/1:0,120:30:122:1.00:2	0/1:0,128:30:128:1.00:2	0/1:0,126:30:126:1.00:2	0/1:0,117:31:117:1.00:2	0/1:0,155:31:155:1.00:2	0/1:0,123:31:123:1.00:2	0/1:1,124:31:125:0.992:2
chr5	54404057	rs1051846	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,66:33:166:0.398:2	0/1:83,67:32:150:0.447:2	./.	./.	./.
chr5	54410099	rs444527	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:32:14:0.571:2	./.	./.	./.	./.	./.	0/1:2,99:33:101:0.980:2	0/1:34,52:33:86:0.605:2	./.
chr5	54410120	rs3104230	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:31:80:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,13:33:13:1.00:2	0/1:1,80:32:81:0.988:2	0/1:0,97:32:97:1.00:2	0/1:0,116:32:116:1.00:2	0/1:0,77:33:77:1.00:2	0/1:1,89:32:90:0.989:2	0/1:0,95:32:95:1.00:2	0/1:0,67:32:67:1.00:2	0/1:1,118:32:119:0.992:2
chr5	54420644	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,7:27:158:0.044:2
chr5	54420799	rs382402	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,68:33:68:1.00:2	0/1:14,16:32:30:0.533:2	./.
chr5	54439466	rs1021580	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:33:92:1.00:2	0/1:1,48:32:49:0.980:2	0/1:0,14:33:14:1.00:2	0/1:2,76:32:78:0.974:2	0/1:0,49:32:49:1.00:2	0/1:0,99:32:99:1.00:2	0/1:36,24:32:60:0.400:2	0/1:55,42:32:97:0.433:2	0/1:0,96:33:96:1.00:2	0/1:0,61:33:61:1.00:2	0/1:1,111:33:112:0.991:2
chr5	54442461	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:31:147:0.027:2	./.	./.	./.	./.
chr5	54456851	rs61742528	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,13:32:21:0.619:2	./.
chr5	54459961	rs381852	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:33:37:1.00:2	0/1:0,20:32:20:1.00:2	0/1:3,7:32:10:0.700:2	0/1:0,43:32:43:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,37:32:37:1.00:2	0/1:1,75:33:76:0.987:2	./.	0/1:25,16:34:41:0.390:2	0/1:0,60:33:60:1.00:2
chr5	54468450	rs138811807	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,43:32:95:0.453:2	./.	./.	./.	./.	./.	./.	./.
chr5	54557283	rs1052132	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,15:33:44:0.341:2	./.	./.	./.	./.
chr5	54566530	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:32:64:0.063:2	./.
chr5	54572163	rs3761764	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,45:33:85:0.529:2	./.
chr5	54579211	.	A	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:60,13:21:73:0.178:2	./.	./.	0/1:62,15:21:77:0.195:2	0/1:48,11:18:59:0.186:2	0/1:60,10:21:70:0.143:2	0/1:38,9:18:47:0.191:2	0/1:59,10:21:69:0.145:2	0/1:75,10:21:85:0.118:2	0/1:47,11:18:58:0.190:2	0/1:72,16:16:88:0.182:2
chr5	54591272	rs76212559	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,9:19:156:0.058:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	54645411	rs2061242	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,30:30:61:0.492:2	./.
chr5	54674296	rs10471413	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,53:33:116:0.457:2	./.
chr5	54830380	rs11745331	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,7:31:7:1.00:2	0/1:0,2:29:2:1.00:2	./.	0/1:0,8:30:8:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,6:28:6:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,7:34:7:1.00:2	./.	0/1:0,2:29:2:1.00:2
chr5	54960609	rs4865614	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,27:32:57:0.474:2	0/1:37,24:32:61:0.393:2	0/1:5,4:34:9:0.444:2	0/1:61,46:32:107:0.430:2	./.	0/1:50,49:33:99:0.495:2	0/1:30,35:32:65:0.538:2	0/1:59,38:33:97:0.392:2	0/1:0,74:34:74:1.00:2	0/1:38,42:33:80:0.525:2	0/1:0,97:33:97:1.00:2
chr5	54960673	rs4865615	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,27:32:58:0.466:2	0/1:30,17:32:47:0.362:2	0/1:3,3:31:6:0.500:2	0/1:43,28:32:71:0.394:2	./.	0/1:46,28:30:74:0.378:2	0/1:30,20:31:50:0.400:2	0/1:65,31:32:96:0.323:2	0/1:0,38:31:38:1.00:2	0/1:32,28:32:60:0.467:2	0/1:0,64:32:64:1.00:2
chr5	54960687	rs4865616	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,23:33:48:0.479:2	0/1:23,14:33:37:0.378:2	0/1:2,4:32:6:0.667:2	0/1:36,18:32:54:0.333:2	./.	0/1:35,23:31:58:0.397:2	0/1:22,16:30:38:0.421:2	0/1:60,27:32:87:0.310:2	0/1:0,28:33:28:1.00:2	0/1:26,24:32:50:0.480:2	0/1:0,57:33:57:1.00:2
chr5	55058992	rs3761776	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:30,35:31:65:0.538:2	0/1:21,12:32:33:0.364:2	./.	0/1:19,16:32:35:0.457:2	./.	0/1:28,22:31:50:0.440:2	0/1:13,7:31:20:0.350:2	./.	./.	0/1:27,13:32:40:0.325:2	./.
chr5	55081694	rs2305123	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,84:32:166:0.506:2	./.	./.	./.	0/1:47,57:32:104:0.548:2	./.
chr5	55082458	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:31:149:0.027:2	./.	./.	./.	./.	./.
chr5	55082474	rs957459	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:60,51:32:111:0.459:2	0/1:40,36:31:76:0.474:2	./.	0/1:89,63:31:152:0.414:2	./.	0/1:67,62:31:129:0.481:2	0/1:75,40:32:115:0.348:2	./.	./.	0/1:65,64:32:129:0.496:2	./.
chr5	55086443	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:34:43:0.093:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	55086497	rs61748223	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,11:32:38:0.289:2	0/1:14,6:31:20:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	55149407	rs10940487	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:33:80:1.00:2	0/1:0,63:33:63:1.00:2	0/1:0,13:32:13:1.00:2	0/1:2,115:32:117:0.983:2	0/1:0,62:32:62:1.00:2	./.	0/1:2,72:33:74:0.973:2	0/1:79,48:33:127:0.378:2	0/1:0,111:33:111:1.00:2	0/1:70,50:33:120:0.417:2	0/1:0,138:33:138:1.00:2
chr5	55155402	rs1009639	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,45:32:88:0.511:2	0/1:27,20:33:47:0.426:2	0/1:0,9:32:9:1.00:2	0/1:0,78:32:78:1.00:2	0/1:1,69:32:70:0.986:2	./.	0/1:1,99:32:100:0.990:2	0/1:69,38:32:107:0.355:2	0/1:0,90:33:90:1.00:2	0/1:41,40:32:81:0.494:2	0/1:2,74:33:76:0.974:2
chr5	55168132	rs59086632	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,31:30:67:0.463:2	0/1:24,16:30:40:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	55203251	rs199913572	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:57,4:27:61:0.066:2	./.	./.	./.	./.	./.	./.	0/1:58,9:21:67:0.134:2	./.	0/1:38,11:16:49:0.224:2	./.
chr5	55204187	rs9632389	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,41:32:98:0.427:2	0/1:46,38:32:85:0.452:2	./.	0/1:63,46:31:109:0.422:2	./.	./.	./.	./.
chr5	55206444	rs161704	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,74:32:143:0.521:2
chr5	55212897	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,4:32:30:0.133:2	./.	./.	./.	./.	./.	./.	./.
chr5	55238503	rs139764167	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,4:33:39:0.103:2	./.	./.	./.	./.
chr5	55238555	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:30:43:0.093:2	./.	./.	./.	./.
chr5	55243371	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,5:30:158:0.032:2	./.	./.	./.
chr5	55248135	rs34417936	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,36:33:85:0.424:2	0/1:15,15:32:30:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	55251931	rs2228043	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,97:32:194:0.500:2	./.	./.	./.	./.	./.	./.
chr5	55264153	rs2228044	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,26:29:57:0.456:2	./.	./.	./.	./.	./.	./.
chr5	55406952	rs321775	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,22:30:56:0.393:2	./.	0/1:0,38:30:38:1.00:2	./.	0/1:47,18:30:65:0.277:2	./.	./.	0/1:0,43:30:43:1.00:2
chr5	55407542	rs321776	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,67:31:142:0.472:2	./.	0/1:0,101:31:101:1.00:2	./.	0/1:60,53:32:113:0.469:2	./.	./.	0/1:2,137:32:139:0.986:2
chr5	55412471	rs60779428	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,93:32:185:0.503:2
chr5	55455645	rs13186299	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,44:33:93:0.473:2	0/1:27,22:32:49:0.449:2	./.	./.	./.	./.	./.	./.	0/1:78,60:34:138:0.435:2	./.	./.
chr5	55828932	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:30:113:0.035:2	./.	./.	./.
chr5	55828995	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,6:16:14:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	55831021	rs13178412	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:18,20:33:38:0.526:2	0/1:9,9:32:18:0.500:2	0/1:2,8:32:10:0.800:2	./.	./.	./.	0/1:14,15:33:29:0.517:2	./.	0/1:17,21:34:38:0.553:2	./.	0/1:32,30:32:62:0.484:2
chr5	56161787	rs832575	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:32:95:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,83:31:83:1.00:2	0/1:0,73:32:73:1.00:2	0/1:1,96:31:97:0.990:2	0/1:0,114:33:114:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,90:31:90:1.00:2
chr5	56168712	rs2229882	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,24:32:54:0.444:2	0/1:40,20:32:60:0.333:2	./.	./.	./.	./.	./.
chr5	56177443	rs702689	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:31:61:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,7:29:7:1.00:2	0/1:35,31:30:66:0.470:2	0/1:0,40:30:40:1.00:2	0/1:0,55:30:55:1.00:2	0/1:3,38:31:41:0.927:2	0/1:2,45:30:47:0.957:2	0/1:1,87:32:88:0.989:2	0/1:0,67:31:67:1.00:2	0/1:0,74:31:74:1.00:2
chr5	56177743	rs832582	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:31:53:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,2:31:2:1.00:2	0/1:31,30:31:61:0.492:2	0/1:0,37:31:37:1.00:2	0/1:0,47:30:47:1.00:2	0/1:1,45:32:46:0.978:2	0/1:0,63:31:63:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,75:32:75:1.00:2
chr5	56177843	rs45556841	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,38:32:80:0.475:2	0/1:16,26:32:42:0.619:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	56178111	rs3822625	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,27:33:56:0.482:2	0/1:25,25:32:50:0.500:2	./.	./.	./.	./.	./.
chr5	56178217	rs832583	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:30:45:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,3:31:3:1.00:2	0/1:34,19:32:53:0.358:2	0/1:0,31:30:31:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,82:29:82:1.00:2
chr5	56207123	rs2257505	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:52:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,14:31:14:1.00:2	0/1:47,29:31:76:0.382:2	0/1:0,38:31:38:1.00:2	0/1:0,56:30:56:1.00:2	0/1:0,40:31:40:1.00:2	0/1:2,65:32:67:0.970:2	0/1:0,73:32:73:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,73:32:73:1.00:2
chr5	56209735	rs40497	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:23,30:33:53:0.566:2	0/1:16,10:32:26:0.385:2	0/1:0,7:33:7:1.00:2	./.	./.	0/1:39,32:32:71:0.451:2	./.	0/1:21,38:33:59:0.644:2	./.	0/1:0,42:33:43:1.00:2	0/1:24,32:34:56:0.571:2
chr5	56233490	rs35386984	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,20:32:20:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	56234157	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:163,4:32:167:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr5	56242774	rs2034244	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,44:30:121:0.364:2	0/1:62,46:30:108:0.426:2	0/1:56,51:30:107:0.477:2	./.	./.	./.	./.	./.
chr5	56526783	rs1130203	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,59:31:132:0.447:2	0/1:40,29:32:69:0.420:2	0/1:0,12:31:12:1.00:2	0/1:73,65:31:138:0.471:2	./.	./.	0/1:89,84:32:173:0.486:2	0/1:96,57:31:153:0.373:2	0/1:0,143:32:143:1.00:2	0/1:0,164:31:164:1.00:2	0/1:0,160:31:160:1.00:2
chr5	56558443	rs199892864	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,53:32:127:0.417:2	./.
chr5	56777677	rs16886992	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,10:32:24:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	56778103	rs61737336	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:110,75:29:185:0.405:2	./.	./.	./.	./.	./.	./.
chr5	56778225	rs147643155	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,74:28:146:0.507:2	./.	./.
chr5	56778496	rs114700949	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,51:30:118:0.432:2
chr5	57751443	rs1042994	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,64:30:150:0.427:2	./.	./.	./.	./.	./.	./.
chr5	57753116	rs17710502	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,8:30:21:0.381:2	./.	./.	./.	./.	./.	./.
chr5	57753149	rs17767072	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,7:31:15:0.467:2	./.	./.	./.	./.	./.	./.
chr5	57754004	rs697135	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:32:11:1.00:2	0/1:0,7:31:7:1.00:2	./.	./.	0/1:0,4:30:4:1.00:2	./.	./.	0/1:3,6:32:9:0.667:2	./.	./.	0/1:10,21:32:31:0.677:2
chr5	57754005	rs1848510	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:31:7:1.00:2	./.	0/1:0,9:30:9:1.00:2	./.	./.	./.	0/1:0,9:31:9:1.00:2	0/1:19,11:33:30:0.367:2
chr5	57754851	rs702722	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,69:32:142:0.486:2	0/1:46,34:31:80:0.425:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	57755570	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,9:33:18:0.500:2
chr5	57755703	rs3211270	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,5:31:7:0.714:2	0/1:0,58:31:58:1.00:2	./.	0/1:0,51:31:51:1.00:2	0/1:16,25:30:41:0.610:2	0/1:32,27:32:59:0.458:2	0/1:18,15:32:33:0.455:2	0/1:0,31:31:31:1.00:2	0/1:13,12:31:25:0.480:2
chr5	57790642	rs143566059	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,35:30:68:0.515:2
chr5	57790693	rs147191680	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,11:32:35:0.314:2	./.	./.	./.	./.
chr5	57791311	rs1389308	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:10,12:33:22:0.545:2	0/1:12,6:32:18:0.333:2	0/1:1,5:33:6:0.833:2	./.	0/1:0,53:32:53:1.00:2	0/1:25,25:32:50:0.500:2	0/1:19,32:33:51:0.627:2	0/1:0,57:32:57:1.00:2	0/1:27,28:33:55:0.509:2	0/1:22,24:31:46:0.522:2	0/1:30,28:33:58:0.483:2
chr5	57792770	rs72758193	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,49:29:96:0.510:2	./.	./.	./.	./.	./.	./.
chr5	58270494	rs7736186	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,29:32:69:0.420:2	0/1:17,17:31:34:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	58476463	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:171,4:34:175:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr5	58481068	rs199590419	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:31:100:0.040:2	./.	./.	./.	./.
chr5	58481081	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:33:100:0.040:2	./.	./.	./.	./.
chr5	58489384	rs27175	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:32:74:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,7:32:7:1.00:2	0/1:1,76:32:77:0.987:2	0/1:1,64:31:65:0.985:2	0/1:0,56:31:56:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,79:33:79:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,96:32:96:1.00:2
chr5	60200665	rs4647100	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,56:33:121:0.463:2	0/1:40,22:32:62:0.355:2	0/1:10,9:32:19:0.474:2	0/1:83,46:33:129:0.357:2	0/1:54,40:32:94:0.426:2	0/1:48,61:32:109:0.560:2	./.	0/1:74,50:32:124:0.403:2	./.	0/1:2,74:33:76:0.974:2	./.
chr5	60214128	rs4647088	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,41:32:69:0.594:2	./.	./.	./.
chr5	60217982	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,5:32:14:0.357:2	./.	./.	./.	./.
chr5	60241142	rs158921	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:78,32:32:111:0.291:2	0/1:47,27:33:74:0.365:2	./.	0/1:82,75:33:157:0.478:2	./.	0/1:120,60:32:180:0.333:2	0/1:114,66:32:180:0.367:2	./.	0/1:31,136:33:167:0.814:2	./.	0/1:23,125:32:148:0.845:2
chr5	60241189	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:32:108:0.037:2	./.	./.	./.	./.	./.
chr5	60394802	rs115892013	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,43:32:88:0.489:2	./.	./.	./.
chr5	60628411	rs75429795	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,36:31:53:0.679:2	./.	0/1:33,59:32:92:0.641:2	./.	./.	0/1:29,42:33:71:0.592:2	./.	0/1:30,45:32:75:0.600:2
chr5	60628414	rs111274143	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,34:30:52:0.654:2	./.	0/1:33,60:30:93:0.645:2	./.	./.	0/1:29,42:31:71:0.592:2	./.	0/1:29,44:30:73:0.603:2
chr5	60822115	rs116036211	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,21:31:74:0.284:2	./.	./.	./.
chr5	60982841	rs16893687	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,121:31:122:0.992:2	0/1:0,76:32:76:1.00:2	./.	./.	0/1:106,74:31:180:0.411:2	0/1:115,65:31:180:0.361:2	0/1:2,155:31:157:0.987:2	0/1:110,75:31:185:0.405:2	./.	./.	0/1:101,77:31:178:0.433:2
chr5	60999768	rs436696	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,43:31:103:0.417:2	0/1:31,55:32:86:0.640:2	./.	./.	./.	0/1:69,47:31:116:0.405:2	./.	./.	0/1:1,166:32:167:0.994:2	0/1:0,115:32:116:1.00:2	0/1:65,58:33:124:0.472:2
chr5	61686730	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,5:32:189:0.026:2
chr5	61686759	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,5:32:189:0.027:2
chr5	61686789	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,5:32:171:0.029:2
chr5	61694379	rs247264	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:91,80:30:171:0.468:2	0/1:40,35:30:75:0.467:2	./.	0/1:0,138:30:139:1.00:2	./.	./.	0/1:2,92:29:94:0.979:2	0/1:68,61:30:129:0.473:2	0/1:0,136:31:136:1.00:2	./.	./.
chr5	61697859	rs27089	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:84,69:32:153:0.451:2	0/1:49,36:32:85:0.424:2	./.	0/1:2,170:31:172:0.988:2	./.	./.	0/1:1,129:31:130:0.992:2	0/1:0,190:31:190:1.00:2	0/1:2,170:32:172:0.988:2	./.	./.
chr5	61747737	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:34:131:0.031:2	./.	./.
chr5	61772535	rs26635	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:95,96:32:191:0.503:2	0/1:71,49:32:120:0.408:2	0/1:2,27:31:29:0.931:2	./.	0/1:1,86:31:87:0.989:2	0/1:4,165:31:169:0.976:2	./.	./.	./.	0/1:6,124:32:130:0.954:2	0/1:0,173:32:173:1.00:2
chr5	61779843	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:197:0.020:2	./.	./.
chr5	61811296	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:33:159:0.025:2
chr5	62072652	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:31:138:0.029:2	./.	./.	./.	./.
chr5	62072661	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:31:138:0.029:2	./.	./.	./.	./.
chr5	62073022	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:31:93:0.043:2	./.	./.
chr5	62073027	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,5:34:87:0.057:2	./.	./.
chr5	62073062	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:32:3:0.667:2	0/1:45,9:31:54:0.167:2	./.	./.	./.	0/1:51,14:30:65:0.215:2	./.	./.	./.
chr5	63256547	rs181835946	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,50:32:109:0.459:2	./.	./.	./.
chr5	63621066	rs111583002	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,74:31:162:0.457:2	./.	./.	./.	./.	./.
chr5	63665448	rs76090587	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:107,90:31:197:0.457:2	./.	0/1:118,79:32:197:0.401:2	./.	./.	0/1:102,69:32:171:0.404:2	./.
chr5	63905068	rs889248	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:29:66:1.00:2	0/1:1,43:29:44:0.977:2	0/1:0,8:30:8:1.00:2	0/1:38,49:29:88:0.563:2	0/1:0,61:30:62:1.00:2	0/1:0,95:29:95:1.00:2	0/1:0,69:30:69:1.00:2	0/1:0,99:30:100:1.00:2	0/1:1,94:31:95:0.989:2	0/1:0,81:30:81:1.00:2	0/1:60,63:29:123:0.512:2
chr5	64020316	rs80170948	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,26:32:49:0.531:2	./.	./.	./.	./.	0/1:23,32:33:55:0.582:2	./.	0/1:48,43:32:91:0.473:2
chr5	64023924	rs10471638	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:30,20:31:50:0.400:2	0/1:21,14:31:35:0.400:2	./.	./.	0/1:22,14:30:36:0.389:2	./.	0/1:30,11:30:41:0.268:2	./.	./.	./.	./.
chr5	64023981	rs275819	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,19:32:21:0.905:2	0/1:0,15:32:15:1.00:2	./.	./.	0/1:0,18:32:18:1.00:2	0/1:12,28:32:40:0.700:2	0/1:12,3:31:15:0.200:2	0/1:16,7:32:23:0.304:2	./.	./.	./.
chr5	64036933	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2	./.
chr5	64064943	rs1363953	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,12:29:30:0.400:2	./.	./.	0/1:15,6:31:21:0.286:2	./.
chr5	64096145	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:37:154:0.026:2	./.	./.
chr5	64097145	rs7735338	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,39:33:76:0.513:2	0/1:23,23:32:46:0.500:2	0/1:37,32:32:69:0.464:2	0/1:14,17:33:31:0.548:2	0/1:47,29:33:76:0.382:2	./.	./.	./.
chr5	64267595	rs2278351	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,27:33:52:0.519:2	./.	0/1:32,39:32:71:0.549:2	0/1:29,12:33:41:0.293:2	0/1:40,31:32:71:0.437:2	./.	0/1:50,22:33:72:0.306:2	./.
chr5	64273018	rs1309581	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:100,85:32:185:0.459:2	0/1:52,45:31:97:0.464:2	0/1:0,14:31:14:1.00:2	0/1:99,92:31:192:0.482:2	0/1:4,119:31:123:0.967:2	./.	0/1:102,65:31:167:0.389:2	0/1:110,86:31:197:0.439:2	./.	0/1:119,73:31:192:0.380:2	0/1:103,90:32:193:0.466:2
chr5	64511176	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:33:36:0.114:2	./.
chr5	64511194	rs149141130	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,21:31:44:0.477:2	./.	./.	./.	./.	./.
chr5	64556494	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,23:33:139:0.165:2
chr5	64629908	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,4:31:114:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr5	64747305	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:33:186:0.022:2	./.	./.
chr5	64748681	rs1309615	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,76:28:187:0.406:2
chr5	64881870	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:34:156:0.026:2	./.	./.	./.
chr5	64881936	rs27141	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,6:29:14:0.429:2	0/1:69,62:30:131:0.473:2	./.	0/1:60,50:29:110:0.455:2	0/1:54,59:29:113:0.522:2	0/1:2,117:29:119:0.983:2	0/1:2,139:31:141:0.986:2	0/1:51,36:31:87:0.414:2	./.
chr5	64887614	rs61748229	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,10:32:24:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	64892939	rs33945461	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,52:32:127:0.409:2	./.	./.	0/1:64,69:34:133:0.519:2	./.	./.
chr5	64956563	rs201906257	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,102:33:200:0.510:2	./.	./.
chr5	65105993	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,5:31:111:0.045:2	./.	./.	./.	./.
chr5	65108215	rs2254485	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	0/1:0,5:33:5:1.00:2	0/1:8,6:31:14:0.429:2	0/1:1,3:32:4:0.750:2	0/1:0,9:32:9:1.00:2	0/1:0,13:31:13:1.00:2	./.	0/1:0,22:31:22:1.00:2
chr5	65317181	rs706679	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,81:32:82:0.988:2	0/1:0,49:31:49:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,102:31:102:1.00:2	0/1:3,52:31:55:0.945:2	0/1:38,47:30:85:0.553:2	0/1:0,54:31:54:1.00:2	0/1:59,53:31:112:0.473:2	0/1:2,109:32:111:0.982:2	0/1:0,74:31:74:1.00:2	0/1:3,112:32:116:0.974:2
chr5	65321311	rs3213837	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,13:31:36:0.361:2	./.	./.	./.	./.	./.	./.
chr5	65349427	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:31:144:0.028:2
chr5	65350374	rs36303	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,50:32:104:0.481:2	./.	0/1:51,71:32:122:0.582:2	./.	./.	./.
chr5	65371037	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:31:123:0.033:2	./.	./.	./.	./.	./.
chr5	65466752	rs144628047	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:34:76:0.053:2	./.	./.	./.	./.	./.
chr5	66166614	rs36138	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,35:29:35:1.00:2	0/1:23,30:30:53:0.566:2	0/1:18,18:30:36:0.500:2	./.	./.	./.	0/1:16,10:31:26:0.385:2	./.
chr5	66195774	rs7711116	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:28:6:0.500:2	./.	0/1:23,19:30:42:0.452:2	./.	./.	./.	0/1:47,32:29:79:0.405:2	./.	0/1:36,30:29:67:0.455:2
chr5	66198494	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:32:80:0.050:2	./.	./.
chr5	66198546	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:31:111:0.036:2	./.	./.	./.
chr5	66226622	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:32:72:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	66226627	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,4:32:75:0.053:2	./.	./.	./.	./.	./.	./.
chr5	66445256	rs371636415	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:33:183:0.022:2	./.	./.	./.
chr5	66456367	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:31:36:0.111:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	66459583	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,4:31:21:0.190:2	./.	./.	./.	./.
chr5	66459878	rs1705399	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,3:32:3:1.00:2	./.	./.	0/1:0,6:29:6:1.00:2	0/1:0,2:29:2:1.00:2	0/1:0,2:33:2:1.00:2	./.	0/1:0,3:32:3:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.
chr5	66461363	rs55882716	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,27:31:80:0.338:2	./.	./.	./.	./.	./.
chr5	66461930	rs17221521	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,12:30:35:0.343:2	0/1:7,6:31:13:0.462:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	66462399	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,6:30:94:0.064:2	./.	./.	./.
chr5	66480004	rs1697144	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:32:32:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,2:34:2:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,39:32:39:1.00:2
chr5	66492412	rs5744463	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,45:32:45:1.00:2	./.	./.	0/1:33,29:34:62:0.468:2	./.	./.
chr5	67522636	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:33:138:0.029:2
chr5	67522722	rs706713	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,18:30:42:0.429:2	0/1:14,17:31:31:0.548:2	0/1:23,20:30:43:0.465:2	./.	./.	0/1:21,22:31:43:0.512:2	./.	./.
chr5	67575548	rs61749601	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,29:34:55:0.527:2	0/1:13,14:33:27:0.519:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	67576553	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:33:29:0.138:2	./.
chr5	67588148	rs3730089	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,78:31:133:0.591:2	./.	./.	./.	0/1:64,47:30:112:0.423:2	./.	./.	0/1:73,57:31:130:0.438:2
chr5	67592136	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:33:167:0.024:2	./.	./.
chr5	68417643	rs164578	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,79:32:161:0.491:2	0/1:64,62:32:126:0.492:2	0/1:15,9:30:24:0.375:2	0/1:104,93:32:197:0.472:2	0/1:120,76:31:196:0.388:2	0/1:1,193:31:194:0.995:2	0/1:115,80:31:195:0.410:2	0/1:103,92:31:195:0.472:2	0/1:102,96:32:198:0.485:2	0/1:0,180:32:180:1.00:2	./.
chr5	68419054	rs164572	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,37:33:66:0.561:2	0/1:30,11:32:41:0.268:2	0/1:1,3:33:4:0.750:2	0/1:38,38:32:76:0.500:2	0/1:28,22:33:50:0.440:2	0/1:0,68:32:68:1.00:2	0/1:22,13:31:35:0.371:2	0/1:31,34:32:65:0.523:2	0/1:48,39:34:87:0.448:2	0/1:1,46:31:47:0.979:2	./.
chr5	68471247	rs1128761	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:31:11:0.727:2	./.	./.	0/1:36,24:30:60:0.400:2	0/1:75,38:31:114:0.336:2	./.	./.	0/1:50,38:32:88:0.432:2	./.
chr5	68498772	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,26:30:99:0.263:2	./.	./.	./.	./.	./.	./.	./.
chr5	68525027	rs2932777	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,25:33:58:0.431:2	0/1:14,27:33:41:0.659:2	./.	./.	./.	0/1:30,8:29:38:0.211:2	0/1:25,9:33:34:0.265:2	0/1:25,18:32:43:0.419:2	./.	./.	0/1:0,38:32:38:1.00:2
chr5	68531253	rs2972388	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:116,74:31:190:0.389:2	0/1:86,51:30:137:0.372:2	0/1:0,25:29:25:1.00:2	./.	./.	0/1:2,187:29:189:0.989:2	0/1:0,113:30:113:1.00:2	0/1:115,82:30:197:0.416:2	./.	0/1:115,78:30:193:0.404:2	0/1:1,188:31:190:0.995:2
chr5	68555658	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,4:33:23:0.174:2	./.	./.	./.
chr5	68555719	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,4:34:30:0.133:2	./.	./.	./.
chr5	68565046	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.	./.	./.
chr5	68565060	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:32:125:0.032:2	./.	./.	./.	./.
chr5	68568769	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,3:31:35:0.088:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	68568774	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,4:27:38:0.105:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	68568849	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:113,4:31:117:0.034:2	./.	0/1:130,4:32:134:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr5	68609885	rs11749723	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,8:32:21:0.381:2	./.	./.	./.	./.	0/1:7,5:30:12:0.417:2	0/1:0,6:32:6:1.00:2	0/1:3,3:31:6:0.500:2	./.	0/1:8,3:31:11:0.273:2	0/1:10,7:33:17:0.412:2
chr5	68616079	rs10471773	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,40:32:78:0.513:2	./.	./.	./.
chr5	68616331	rs10471774	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:52,34:33:86:0.395:2	0/1:26,28:32:54:0.519:2	./.	0/1:0,100:32:100:1.00:2	0/1:1,98:32:99:0.990:2	./.	./.	0/1:65,70:32:135:0.519:2	0/1:1,80:33:81:0.988:2	0/1:33,53:32:86:0.616:2	./.
chr5	68661437	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:33:189:0.021:2	./.	./.	./.
chr5	68662380	rs149029532	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:30:108:0.037:2	./.	./.	./.	./.	./.
chr5	68662386	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:31:107:0.037:2	./.	./.	./.	./.	./.
chr5	68692367	rs200909538	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,9:17:31:0.290:2	./.	./.	./.	./.	0/1:20,6:16:26:0.231:2	./.
chr5	68695940	rs1045051	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:111,78:29:189:0.413:2	0/1:49,69:30:118:0.585:2	0/1:21,32:29:53:0.604:2	./.	./.	0/1:99,98:29:197:0.497:2	0/1:100,91:30:193:0.476:2	0/1:97,98:28:195:0.503:2	./.	./.	0/1:102,82:30:186:0.446:2
chr5	68715310	rs1185246	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:47,29:31:76:0.382:2	0/1:24,18:31:42:0.429:2	0/1:0,12:30:12:1.00:2	./.	./.	0/1:0,114:30:114:1.00:2	0/1:2,89:31:91:0.978:2	0/1:67,69:31:136:0.507:2	./.	0/1:69,41:31:110:0.373:2	0/1:51,43:31:94:0.457:2
chr5	68720419	rs299099	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,32:33:49:0.653:2	0/1:18,17:32:35:0.486:2	./.	0/1:2,75:32:77:0.974:2	0/1:0,44:32:44:1.00:2	./.	./.	0/1:22,40:32:62:0.645:2	0/1:0,92:33:92:1.00:2	0/1:20,43:33:63:0.683:2	./.
chr5	68804987	rs147125035	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,28:33:63:0.444:2	./.
chr5	68805020	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,4:34:102:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr5	68805616	rs35107257	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,37:31:81:0.457:2	./.
chr5	68863596	rs200620823	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,17:31:77:0.221:2	./.	./.	./.	0/1:154,43:32:197:0.218:2	./.	./.	./.	./.
chr5	68874621	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:67,68:32:135:0.504:2	0/1:64,77:32:141:0.546:2	0/1:45,12:31:57:0.211:2	0/1:44,72:31:116:0.621:2	0/1:80,51:31:131:0.389:2	0/1:128,62:31:190:0.326:2	0/1:168,28:31:196:0.143:2	0/1:96,80:32:176:0.455:2	0/1:136,60:32:197:0.306:2	0/1:175,21:32:196:0.107:2	0/1:145,52:32:197:0.264:2
chr5	69359244	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,37:31:198:0.187:2	./.
chr5	69362916	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,27:32:91:0.297:2	./.	./.
chr5	69362949	.	A	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,55:31:55:1.00:2	0/1:0,44:31:44:1.00:2	./.	0/1:1,55:32:56:0.982:2	0/1:1,28:29:29:0.966:2	0/1:24,13:31:37:0.351:2	0/1:31,8:29:39:0.205:2	0/1:0,67:31:67:1.00:2	0/1:32,29:32:61:0.475:2	0/1:25,23:31:48:0.479:2	0/1:0,64:32:64:1.00:2
chr5	69718742	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,4:33:49:0.082:2	./.	./.	./.	0/1:164,23:32:187:0.123:2	./.	./.	./.	./.
chr5	69723444	.	A	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,21:31:33:0.636:2	0/1:12,11:33:23:0.478:2	./.	0/1:11,16:31:27:0.593:2	0/1:16,20:33:36:0.556:2	0/1:186,9:32:195:0.046:2	0/1:168,10:34:179:0.056:2	0/1:19,20:32:39:0.513:2	0/1:170,27:30:197:0.137:2	./.	0/1:57,20:31:77:0.260:2
chr5	69729779	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,67:32:141:0.475:2	0/1:82,75:32:157:0.478:2	0/1:44,12:32:56:0.214:2	0/1:58,91:31:149:0.611:2	0/1:74,60:31:134:0.448:2	0/1:115,78:31:194:0.404:2	0/1:174,22:31:196:0.112:2	0/1:124,66:32:190:0.347:2	0/1:124,72:32:196:0.367:2	0/1:168,28:32:196:0.143:2	0/1:146,48:32:194:0.247:2
chr5	70234668	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,37:31:197:0.188:2	./.
chr5	70238340	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,16:31:97:0.165:2	./.	./.
chr5	70238373	.	A	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,61:32:63:0.984:2	0/1:1,33:31:34:0.971:2	./.	0/1:3,43:31:46:0.935:2	0/1:0,27:30:27:1.00:2	0/1:25,15:31:40:0.375:2	0/1:19,15:32:34:0.441:2	0/1:0,64:30:64:1.00:2	0/1:23,18:32:41:0.439:2	0/1:31,21:31:52:0.404:2	0/1:0,53:31:53:1.00:2
chr5	70265955	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,11:33:193:0.057:2	./.
chr5	70280173	rs144305867	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,13:32:41:0.317:2	./.	./.	./.	0/1:155,40:32:195:0.205:2	./.	./.	0/1:139,57:31:196:0.291:2	0/1:157,39:31:196:0.199:2
chr5	70280499	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,16:33:102:0.157:2	0/1:124,25:31:149:0.168:2
chr5	70280518	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,26:32:138:0.188:2	0/1:158,32:31:190:0.168:2
chr5	70280944	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,18:32:70:0.257:2	./.	./.	./.	0/1:64,16:33:80:0.200:2	./.	./.
chr5	70281009	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,8:31:77:0.104:2
chr5	70282551	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,5:31:24:0.208:2	./.	./.	./.	0/1:126,22:32:148:0.149:2	./.	./.	0/1:160,27:32:187:0.144:2	0/1:166,28:32:194:0.144:2
chr5	70282609	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,4:28:27:0.148:2	./.	./.	./.	0/1:132,20:31:152:0.132:2	./.	./.	0/1:155,23:32:178:0.129:2	0/1:146,17:32:163:0.104:2
chr5	70308251	rs28409706	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:0,37:32:37:1.00:2	0/1:3,7:32:10:0.700:2	0/1:2,35:30:37:0.946:2	0/1:0,62:31:62:1.00:2	0/1:42,55:31:97:0.567:2	0/1:33,65:31:98:0.663:2	0/1:0,80:31:80:1.00:2	0/1:56,30:31:86:0.349:2	0/1:31,22:31:53:0.415:2	0/1:0,107:32:107:1.00:2
chr5	70316535	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,34:33:194:0.175:2
chr5	70320130	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,17:33:193:0.088:2	0/1:170,18:33:188:0.096:2
chr5	70344903	rs199999389	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:131,68:32:199:0.342:2	0/1:76,45:32:121:0.372:2	0/1:54,10:31:64:0.156:2	0/1:85,76:32:161:0.472:2	0/1:132,67:31:200:0.337:2	0/1:136,59:31:195:0.303:2	0/1:182,17:32:199:0.085:2	0/1:120,80:31:200:0.400:2	0/1:143,54:33:197:0.274:2	0/1:168,30:31:198:0.152:2	0/1:150,41:32:192:0.215:2
chr5	70351252	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:124,10:33:134:0.075:2	0/1:170,5:32:175:0.029:2	./.	0/1:132,5:33:137:0.036:2	./.	./.	./.	0/1:136,14:32:150:0.093:2	./.	./.	0/1:183,5:34:188:0.027:2
chr5	70355955	rs200856546	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,7:33:200:0.035:2	./.	./.	./.	./.
chr5	70370109	rs377536466	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,5:32:9:0.556:2	./.	./.	./.	./.	./.	0/1:8,3:32:11:0.273:2	./.	./.	./.
chr5	70378642	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:30:5:0.800:2	./.	./.	./.
chr5	70398749	rs192822702	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,64:32:175:0.366:2	0/1:116,76:32:192:0.396:2
chr5	70405059	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,11:32:200:0.055:2	./.	./.	0/1:187,5:31:192:0.026:2	0/1:188,6:32:194:0.031:2
chr5	70405385	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,15:32:78:0.195:2	0/1:127,33:32:160:0.206:2
chr5	70405404	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,22:32:104:0.212:2	0/1:153,41:31:195:0.211:2
chr5	70405830	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,21:32:51:0.412:2	./.	./.	./.	0/1:57,37:33:94:0.394:2	./.	./.
chr5	70405895	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,12:31:114:0.105:2
chr5	70407437	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,18:32:170:0.106:2	./.	./.	0/1:176,21:33:197:0.107:2	0/1:170,26:32:196:0.133:2
chr5	70407495	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,3:32:20:0.150:2	./.	./.	./.	0/1:149,19:30:168:0.113:2	./.	./.	0/1:145,21:31:166:0.127:2	0/1:145,26:31:171:0.152:2
chr5	70751818	rs3748043	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,35:32:77:0.461:2	0/1:28,23:32:51:0.451:2	0/1:3,14:32:17:0.824:2	0/1:0,93:32:93:1.00:2	0/1:80,51:31:131:0.389:2	./.	0/1:64,25:32:89:0.281:2	0/1:1,95:31:96:0.990:2	0/1:2,99:32:101:0.980:2	0/1:2,98:31:100:0.980:2	0/1:0,52:31:52:1.00:2
chr5	70800475	rs3761966	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,59:32:117:0.504:2	0/1:43,38:32:81:0.469:2	0/1:13,12:31:25:0.480:2	0/1:67,68:31:135:0.504:2	./.	./.	0/1:38,28:30:66:0.424:2	0/1:50,79:31:129:0.612:2	./.	0/1:0,101:32:101:1.00:2	./.
chr5	70800538	rs3761967	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,62:30:162:0.383:2	0/1:67,38:31:105:0.362:2	./.	./.	0/1:98,46:30:144:0.319:2	0/1:3,145:32:148:0.980:2	./.	0/1:0,165:31:165:1.00:2
chr5	70806457	rs715748	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,31:32:59:0.525:2	0/1:22,17:32:39:0.436:2	./.	./.	0/1:41,37:32:78:0.474:2	0/1:1,39:32:40:0.975:2	./.	0/1:1,70:33:71:0.986:2
chr5	70806649	rs1961760	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,12:28:20:0.600:2	0/1:8,8:30:16:0.500:2	./.	./.	0/1:8,7:31:15:0.467:2	0/1:1,29:31:30:0.967:2	./.	0/1:0,31:31:31:1.00:2
chr5	70806711	rs715747	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,17:32:37:0.459:2	0/1:11,14:33:25:0.560:2	0/1:4,5:32:9:0.556:2	0/1:0,29:32:29:1.00:2	0/1:16,10:32:26:0.385:2	./.	0/1:16,14:31:30:0.467:2	0/1:0,26:33:26:1.00:2	0/1:0,43:34:43:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,46:34:46:1.00:2
chr5	70806958	rs6886336	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:89,77:31:166:0.464:2	0/1:51,43:31:94:0.457:2	0/1:14,14:30:28:0.500:2	0/1:3,161:31:164:0.982:2	0/1:107,69:31:176:0.392:2	0/1:179,5:29:184:0.027:2	0/1:107,77:31:184:0.418:2	0/1:0,158:31:158:1.00:2	0/1:0,170:32:170:1.00:2	0/1:0,164:31:164:1.00:2	0/1:0,153:31:154:1.00:2
chr5	70809169	rs1698063	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,27:30:71:0.380:2	0/1:33,13:29:46:0.283:2	./.	./.	0/1:29,27:30:56:0.482:2	0/1:0,75:31:75:1.00:2	./.	0/1:60,35:30:95:0.368:2
chr5	70818130	rs34529158	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,61:33:117:0.521:2
chr5	70818150	rs12187098	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:43,31:34:74:0.419:2	0/1:39,16:32:55:0.291:2	./.	./.	./.	./.	./.	./.	./.	0/1:32,53:33:85:0.624:2	./.
chr5	70834892	rs35131626	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,77:31:175:0.443:2
chr5	70834926	rs276589	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:67,50:29:117:0.427:2	0/1:54,35:27:89:0.393:2	0/1:6,5:30:11:0.455:2	0/1:77,57:29:134:0.425:2	./.	./.	0/1:66,53:29:120:0.445:2	0/1:80,53:29:133:0.398:2	./.	0/1:1,108:29:109:0.991:2	./.
chr5	70837295	rs6453014	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,28:31:64:0.438:2	0/1:18,27:30:45:0.600:2	./.	0/1:2,86:29:88:0.977:2	0/1:38,26:30:64:0.406:2	./.	0/1:35,33:29:68:0.485:2	0/1:0,85:30:85:1.00:2	0/1:1,75:31:76:0.987:2	0/1:0,86:32:86:1.00:2	0/1:0,95:31:95:1.00:2
chr5	70840233	rs182190	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,37:31:82:0.457:2	0/1:21,22:31:43:0.512:2	./.	./.	0/1:47,32:31:79:0.405:2	0/1:0,78:32:78:1.00:2	./.	0/1:45,59:32:104:0.567:2
chr5	70849021	rs469039	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,10:32:20:0.500:2	0/1:2,8:33:10:0.800:2	./.	./.	0/1:8,7:32:15:0.467:2	0/1:0,27:33:27:1.00:2	./.	0/1:0,28:32:28:1.00:2
chr5	70858194	rs277941	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,15:32:41:0.366:2	0/1:11,10:31:21:0.476:2	0/1:5,5:31:10:0.500:2	0/1:24,23:31:48:0.489:2	./.	./.	0/1:14,10:32:24:0.417:2	0/1:28,14:31:42:0.333:2	./.	0/1:0,46:31:46:1.00:2	./.
chr5	70858342	rs115185087	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,39:34:70:0.557:2	./.	./.	./.	0/1:33,41:32:74:0.554:2	./.	./.	./.
chr5	70945075	rs10064079	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,26:31:53:0.491:2	0/1:17,22:29:39:0.564:2	0/1:4,5:30:9:0.556:2	0/1:0,61:30:62:1.00:2	0/1:0,35:30:35:1.00:2	./.	0/1:24,19:29:43:0.442:2	0/1:1,61:29:62:0.984:2	0/1:0,65:31:65:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,61:30:62:1.00:2
chr5	71490047	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,6:31:155:0.039:2	./.
chr5	71490953	rs202164146	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,12:13:77:0.158:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,14:13:72:0.194:2
chr5	71490955	rs200193861	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:57,19:13:76:0.250:2	./.	./.	0/1:64,11:15:75:0.147:2	0/1:37,9:15:46:0.196:2	0/1:79,15:16:95:0.160:2	0/1:44,12:16:56:0.214:2	0/1:54,13:16:67:0.194:2	0/1:79,10:17:90:0.112:2	0/1:44,11:15:55:0.200:2	0/1:47,22:20:69:0.319:2
chr5	71490962	rs1866374	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,40:32:74:0.541:2	0/1:27,25:31:52:0.481:2	0/1:4,6:33:10:0.600:2	0/1:0,74:32:74:1.00:2	0/1:0,44:32:44:1.00:2	0/1:76,25:32:101:0.248:2	0/1:0,60:32:60:1.00:2	0/1:29,36:32:65:0.554:2	0/1:0,93:34:93:1.00:2	0/1:27,29:33:56:0.518:2	0/1:1,67:32:68:0.985:2
chr5	71491324	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:32:48:0.083:2	./.
chr5	71492734	rs7716079	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,35:31:91:0.385:2	./.	./.	./.
chr5	71494931	rs13153166	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,15:29:29:0.517:2	./.	./.	./.	./.	./.	./.	./.
chr5	71495041	rs3805452	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,3:27:14:0.214:2	./.	./.	./.	0/1:11,7:28:18:0.389:2	0/1:7,6:30:13:0.462:2	0/1:8,8:27:17:0.500:2	0/1:7,5:30:12:0.417:2	./.	./.	0/1:8,6:27:14:0.429:2
chr5	71499538	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:31:142:0.028:2
chr5	71519664	rs3209157	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:32,30:31:63:0.484:2	0/1:24,23:31:47:0.489:2	./.	./.	0/1:19,23:30:42:0.548:2	0/1:29,35:31:64:0.547:2	./.	0/1:22,23:30:45:0.511:2	./.	0/1:31,21:32:52:0.404:2	0/1:53,41:31:94:0.436:2
chr5	71524163	rs10942927	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:29,24:32:53:0.453:2	0/1:10,12:32:22:0.545:2	./.	./.	0/1:27,14:30:41:0.341:2	0/1:25,30:30:55:0.545:2	./.	0/1:22,14:30:36:0.389:2	./.	0/1:34,24:31:58:0.414:2	0/1:40,38:31:78:0.487:2
chr5	71739602	rs13188519	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,12:32:50:0.240:2	./.	./.	./.	0/1:27,26:33:53:0.491:2	./.
chr5	71756102	rs7721922	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,9:31:25:0.360:2	0/1:103,88:31:191:0.461:2	0/1:112,80:30:192:0.417:2	./.	0/1:0,191:31:191:1.00:2	0/1:95,78:31:173:0.451:2	./.	0/1:88,97:31:185:0.524:2	0/1:112,86:31:198:0.434:2
chr5	71756670	rs2278600	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,37:31:67:0.561:2
chr5	71756761	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:31:64:0.063:2	./.	./.	./.	./.
chr5	71757266	rs74460472	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,9:33:27:0.333:2	0/1:5,7:32:12:0.583:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	71757267	rs78980395	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,9:31:27:0.333:2	0/1:5,7:31:12:0.583:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	72151621	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:30:107:0.037:2	./.	./.	./.	./.
chr5	72151629	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,4:32:112:0.036:2	./.	0/1:102,4:32:106:0.038:2	./.	./.	./.	./.
chr5	72171517	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:28:58:0.069:2	./.	./.	./.	./.	./.
chr5	72173057	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:31:49:0.082:2	./.	./.	./.	./.
chr5	72184098	rs17606	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,143:31:143:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,15:29:15:1.00:2	0/1:65,76:30:141:0.539:2	0/1:0,135:30:135:1.00:2	0/1:1,157:30:158:0.994:2	0/1:0,142:30:142:1.00:2	0/1:1,143:30:144:0.993:2	0/1:84,68:31:152:0.447:2	0/1:1,123:30:124:0.992:2	0/1:103,54:31:157:0.344:2
chr5	72185656	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:33:184:0.022:2	./.	./.	./.	./.
chr5	72192363	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:31:164:0.024:2	./.	./.	./.	./.	./.
chr5	72192921	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,6:31:199:0.030:2	./.	./.	./.
chr5	72192962	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:31:156:0.026:2	./.	./.	./.
chr5	72347223	rs7712838	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,32:29:68:0.471:2	0/1:54,66:30:120:0.550:2	0/1:50,24:30:74:0.324:2	0/1:62,36:29:98:0.367:2	0/1:62,60:31:122:0.492:2	./.	0/1:65,71:30:136:0.522:2
chr5	72348272	rs185435	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,51:32:107:0.477:2	./.	./.	./.	./.	0/1:67,68:34:135:0.504:2	./.	0/1:78,68:32:146:0.466:2
chr5	72351905	rs57213367	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,41:29:84:0.488:2	0/1:30,24:29:54:0.444:2	./.	./.	./.	0/1:50,60:27:110:0.545:2
chr5	72383471	rs147677243	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,30:31:60:0.500:2	./.	./.	./.
chr5	72419267	rs638333	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:89,87:32:176:0.494:2	0/1:74,49:33:123:0.398:2	0/1:17,19:33:36:0.528:2	./.	0/1:90,93:33:183:0.508:2	./.	./.	./.	./.	0/1:101,92:32:193:0.477:2	./.
chr5	72419410	rs7731777	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,84:32:85:0.988:2	0/1:0,39:32:39:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,83:32:84:1.00:2	0/1:1,83:32:84:0.988:2	0/1:0,74:31:74:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,55:32:55:1.00:2	0/1:1,61:31:62:0.984:2	0/1:0,53:32:53:1.00:2
chr5	72419456	rs637450	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,21:30:60:0.350:2	./.	./.	0/1:18,15:26:33:0.455:2	./.	0/1:35,20:30:55:0.364:2	0/1:28,27:29:55:0.491:2	0/1:0,44:29:44:1.00:2
chr5	72419617	rs636926	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,15:30:43:0.349:2	./.	./.	0/1:26,35:30:61:0.574:2	./.	0/1:31,20:32:51:0.392:2	0/1:30,19:31:49:0.388:2	0/1:1,55:32:56:0.982:2
chr5	72427404	rs61746311	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,14:32:28:0.500:2	./.	./.	./.	./.	0/1:34,27:33:61:0.443:2
chr5	72742882	rs2972191	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:30:7:0.571:2	0/1:7,7:24:14:0.500:2	./.	./.	0/1:0,11:24:11:1.00:2	./.	0/1:4,10:27:14:0.714:2	0/1:0,7:21:7:1.00:2	0/1:0,10:27:10:1.00:2
chr5	72744119	rs114980107	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,51:29:81:0.630:2	./.	./.	./.	./.	./.
chr5	72798845	rs14010	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,46:29:46:1.00:2	./.	./.	./.	./.	./.
chr5	72863241	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,8:32:92:0.087:2	./.
chr5	72866454	rs145488096	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:31:88:0.045:2	./.	./.
chr5	72868447	rs16870610	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,14:32:37:0.378:2	./.	./.	./.	./.	./.	./.
chr5	72874907	rs343122	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:40,36:32:76:0.474:2	0/1:26,18:30:44:0.409:2	0/1:4,5:31:9:0.556:2	./.	0/1:32,31:30:63:0.492:2	./.	./.	0/1:38,26:30:64:0.406:2	0/1:2,90:32:92:0.978:2	./.	./.
chr5	73048819	rs17552682	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,83:30:191:0.435:2	./.	./.	./.
chr5	73069775	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:32:81:0.049:2
chr5	73072354	rs7714670	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,100:29:100:1.00:2	0/1:50,48:29:98:0.490:2	0/1:0,100:29:100:1.00:2	0/1:0,91:30:91:1.00:2	0/1:60,57:29:117:0.487:2	0/1:67,45:30:112:0.402:2	0/1:40,51:29:91:0.560:2	0/1:83,46:29:129:0.357:2
chr5	73076511	rs6453022	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,29:31:29:1.00:2	0/1:17,15:31:32:0.469:2	0/1:0,21:31:21:1.00:2	0/1:0,22:31:22:1.00:2	0/1:10,17:31:27:0.630:2	0/1:24,21:33:45:0.467:2	0/1:5,12:32:17:0.706:2	0/1:19,14:32:33:0.424:2
chr5	73090261	rs7716253	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,5:30:6:0.833:2	0/1:0,30:29:31:1.00:2	0/1:15,10:28:25:0.400:2	0/1:0,26:30:26:1.00:2	0/1:0,25:29:25:1.00:2	0/1:28,17:29:45:0.378:2	0/1:19,21:29:40:0.525:2	0/1:14,17:30:31:0.548:2	0/1:25,28:29:53:0.528:2
chr5	73091149	rs73118524	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,18:31:35:0.514:2	./.	./.	./.	./.	./.
chr5	73091228	rs2973548	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:31:8:0.375:2	0/1:0,54:32:54:1.00:2	0/1:17,23:32:40:0.575:2	0/1:35,24:32:59:0.407:2	0/1:2,38:32:40:0.950:2	0/1:35,30:31:65:0.462:2	0/1:63,28:32:91:0.308:2	0/1:41,23:33:64:0.359:2	0/1:46,39:33:85:0.459:2
chr5	73128231	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:31:133:0.030:2	./.	./.	./.
chr5	73142296	rs2973571	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,34:32:34:1.00:2	./.	./.	./.	./.	0/1:38,24:34:62:0.387:2	./.	0/1:36,26:32:62:0.419:2
chr5	73144845	rs2973568	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,57:29:57:1.00:2	0/1:16,8:30:24:0.333:2	0/1:1,38:28:39:0.974:2	0/1:24,13:28:37:0.351:2	0/1:0,50:30:50:1.00:2	0/1:23,20:30:43:0.465:2	0/1:20,29:30:49:0.592:2	0/1:37,17:29:54:0.315:2
chr5	73148481	rs2973566	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,135:31:138:0.978:2	./.	./.	./.	./.	0/1:75,77:33:152:0.507:2	./.	0/1:89,70:32:159:0.440:2
chr5	73163831	rs2931423	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,89:29:89:1.00:2	./.	./.	0/1:52,40:30:92:0.435:2	./.	0/1:44,43:29:87:0.494:2	./.	0/1:51,52:29:104:0.505:2
chr5	73163965	rs2973558	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,114:32:114:1.00:2	./.	./.	0/1:63,55:32:118:0.466:2	./.	0/1:63,37:32:100:0.370:2	./.	0/1:52,50:32:102:0.490:2
chr5	73166000	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,4:28:79:0.051:2	./.	./.	./.	./.	./.	./.
chr5	73179672	rs3749645	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,11:31:27:0.407:2	./.	0/1:0,22:31:22:1.00:2	./.	./.	./.
chr5	73181913	rs61734875	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,18:32:51:0.360:2	./.
chr5	73207372	rs1478453	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,42:33:75:0.560:2	0/1:26,21:33:47:0.447:2	./.	0/1:0,44:32:44:1.00:2	0/1:17,9:33:26:0.346:2	./.	0/1:14,29:32:43:0.674:2	./.	0/1:1,65:33:66:0.985:2	0/1:0,47:33:47:1.00:2	0/1:41,27:33:68:0.397:2
chr5	73930751	rs300239	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,23:33:75:0.307:2	0/1:22,14:32:36:0.389:2	0/1:5,9:30:14:0.643:2	0/1:0,82:31:82:1.00:2	0/1:1,75:31:76:0.987:2	0/1:0,80:31:80:1.00:2	0/1:39,37:31:76:0.487:2	0/1:2,88:32:90:0.978:2	0/1:58,43:32:101:0.426:2	0/1:0,77:32:77:1.00:2	0/1:0,89:32:89:1.00:2
chr5	73931246	rs442425	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,8:27:17:0.471:2	0/1:10,6:27:16:0.375:2	0/1:0,4:29:4:1.00:2	0/1:0,26:26:26:1.00:2	0/1:1,37:26:38:0.974:2	0/1:1,29:27:30:0.967:2	0/1:0,33:26:33:1.00:2	0/1:0,30:26:30:1.00:2	0/1:10,12:28:22:0.545:2	0/1:0,19:28:19:1.00:2	0/1:1,27:27:28:0.964:2
chr5	73932221	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:33:122:0.033:2	./.	./.
chr5	73932315	rs9176	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,26:33:44:0.591:2	0/1:14,12:32:26:0.462:2	0/1:1,4:33:5:0.800:2	0/1:0,85:33:85:1.00:2	0/1:0,64:31:64:1.00:2	0/1:1,49:32:50:0.980:2	0/1:30,24:32:55:0.444:2	0/1:0,62:32:62:1.00:2	0/1:28,21:34:49:0.429:2	0/1:0,39:32:39:1.00:2	0/1:0,49:33:49:1.00:2
chr5	73981270	rs820878	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,17:31:17:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,7:30:7:1.00:2	0/1:1,28:31:29:0.966:2	0/1:0,37:30:37:1.00:2	0/1:0,24:29:24:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,19:32:19:1.00:2
chr5	73981299	rs147155126	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:30:9:0.444:2	./.	./.	./.	./.	./.	./.	./.	0/1:27,16:30:43:0.372:2
chr5	73985215	rs11556045	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,52:33:105:0.495:2	0/1:46,37:33:83:0.446:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	73992881	rs10805890	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:21,13:32:34:0.382:2	0/1:4,6:32:10:0.600:2	./.	0/1:16,16:32:32:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr5	74011484	rs114661695	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:40,25:34:65:0.385:2	0/1:18,11:32:29:0.379:2	./.	0/1:41,32:33:73:0.438:2	./.	./.	./.	./.	./.	./.	./.
chr5	74017499	rs1048167	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,33:32:64:0.516:2	0/1:20,25:34:45:0.556:2	./.	./.
chr5	74037386	rs16872235	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,37:32:65:0.569:2	0/1:59,30:33:89:0.337:2	./.	./.
chr5	74046464	rs17852781	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:116,58:32:174:0.333:2	0/1:67,55:32:123:0.451:2	./.	0/1:80,103:31:183:0.563:2	0/1:109,76:31:185:0.411:2	0/1:99,96:31:195:0.492:2	./.	./.	./.	0/1:114,74:32:188:0.394:2	./.
chr5	74054767	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,3:34:31:0.097:2	./.	./.	./.	./.	./.
chr5	74055209	rs957680	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,52:32:128:0.406:2	0/1:75,73:34:148:0.493:2	./.	./.
chr5	74063154	rs1043968	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,27:32:44:0.614:2	0/1:8,17:32:26:0.680:2	./.	0/1:32,17:32:49:0.347:2	0/1:39,23:32:62:0.371:2	0/1:32,32:33:64:0.500:2	./.	0/1:41,33:31:74:0.446:2	0/1:27,30:34:58:0.526:2	0/1:31,31:33:62:0.500:2	./.
chr5	74064914	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,6:32:157:0.038:2	./.	./.	./.
chr5	74065090	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:32:177:0.023:2	./.	./.
chr5	74069863	rs6874609	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,27:32:60:0.450:2	0/1:16,21:30:38:0.568:2	./.	0/1:33,55:31:88:0.625:2	0/1:35,26:29:61:0.426:2	0/1:32,42:30:74:0.568:2	./.	0/1:50,47:30:97:0.485:2	0/1:56,59:32:115:0.513:2	0/1:35,31:31:67:0.470:2	./.
chr5	74109693	rs61729972	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,32:31:79:0.405:2	./.	./.	./.	./.	./.	./.
chr5	74324548	rs3811987	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,39:31:87:0.448:2	./.	./.	0/1:40,28:32:68:0.412:2	./.	0/1:56,59:32:115:0.513:2	./.	0/1:58,41:31:99:0.414:2
chr5	74324902	rs4704166	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,16:32:36:0.444:2	./.	./.	0/1:15,9:31:24:0.375:2	./.	0/1:13,12:34:25:0.480:2	./.	0/1:14,17:32:31:0.548:2
chr5	74326424	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,3:32:44:0.068:2	./.	./.	./.	./.	./.
chr5	74326530	rs76385772	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,12:30:48:0.250:2	./.	./.	0/1:10,18:31:28:0.643:2	./.	0/1:26,24:32:50:0.480:2	./.	0/1:47,36:29:84:0.434:2
chr5	74647349	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:31:156:0.026:2
chr5	74652199	rs5908	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,83:33:195:0.426:2	./.	./.	./.	./.	./.	./.	./.
chr5	74655306	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,4:33:69:0.058:2	./.	./.	./.	./.	./.	./.
chr5	74681773	rs698912	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,27:33:77:0.351:2	./.	./.	./.	./.	0/1:49,50:33:99:0.505:2	./.	0/1:47,38:32:85:0.447:2
chr5	74722202	rs61754510	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,61:29:142:0.430:2	./.
chr5	74877266	rs3213801	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,20:31:45:0.444:2	./.	./.	./.	./.	0/1:26,13:32:39:0.333:2	./.	0/1:16,29:31:45:0.644:2
chr5	74893635	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,3:33:44:0.068:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	74981103	rs34678567	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,35:29:69:0.507:2	./.	./.	./.	./.
chr5	75001582	rs17672542	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,9:30:30:0.300:2	./.	./.	./.	./.	./.
chr5	75003678	rs2307111	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,98:29:181:0.541:2	./.	0/1:0,180:29:180:1.00:2	./.	./.	0/1:94,92:30:186:0.495:2	0/1:89,78:30:167:0.467:2	0/1:93,77:29:170:0.453:2
chr5	75008193	rs2047059	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,55:32:107:0.514:2	./.	0/1:74,38:32:112:0.339:2	./.	./.	0/1:68,46:33:114:0.404:2	0/1:45,45:33:90:0.500:2	0/1:65,53:32:118:0.449:2
chr5	75427729	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:32:81:0.049:2	./.	./.	./.	./.	./.
chr5	75427935	rs10070440	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,43:31:67:0.642:2	0/1:19,26:31:45:0.578:2	0/1:0,11:31:11:1.00:2	0/1:0,82:31:82:1.00:2	./.	0/1:0,64:30:65:1.00:2	./.	0/1:3,83:31:86:0.965:2	0/1:0,69:32:69:1.00:2	0/1:26,26:31:52:0.500:2	0/1:0,67:31:67:1.00:2
chr5	75591710	rs2270927	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,32:31:64:0.500:2	0/1:32,25:32:57:0.439:2	./.	./.	./.	./.
chr5	75594743	rs31244	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,39:30:65:0.600:2	0/1:30,7:30:37:0.189:2	./.	./.	./.	./.
chr5	75884734	rs1131232	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:47,25:31:72:0.347:2	0/1:27,21:32:48:0.438:2	./.	0/1:2,82:30:84:0.976:2	./.	0/1:0,73:30:73:1.00:2	0/1:29,16:29:45:0.356:2	0/1:49,24:30:73:0.329:2	0/1:0,88:32:88:1.00:2	./.	0/1:61,62:32:123:0.504:2
chr5	75885537	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:33:102:0.039:2	./.	./.	./.	./.	./.
chr5	75886292	rs147531108	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,20:30:47:0.426:2	./.	./.	./.	./.	./.
chr5	75906851	rs7722711	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,20:33:39:0.513:2	./.	./.	0/1:30,32:32:62:0.516:2	./.	./.	./.
chr5	75913440	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:33:60:0.067:2	./.
chr5	75923285	rs2431351	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,125:32:127:0.984:2	0/1:0,166:32:166:1.00:2	0/1:35,25:32:60:0.417:2	0/1:4,151:32:155:0.974:2	./.	0/1:0,170:32:170:1.00:2	./.	0/1:115,69:32:184:0.375:2	0/1:1,118:33:119:0.992:2	0/1:0,115:32:116:1.00:2	0/1:0,143:32:143:1.00:2
chr5	75923294	rs2431352	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,148:33:148:1.00:2	0/1:0,169:32:169:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,174:33:174:1.00:2	0/1:0,179:33:179:1.00:2	0/1:0,182:33:182:1.00:2	0/1:0,193:33:193:1.00:2	0/1:0,183:33:183:1.00:2	0/1:0,139:34:139:1.00:2	0/1:0,141:33:141:1.00:2	0/1:0,161:32:161:1.00:2
chr5	75923307	rs2909888	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,143:31:144:1.00:2	0/1:0,168:30:168:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,174:31:174:1.00:2	0/1:0,191:30:191:1.00:2	0/1:0,182:31:182:1.00:2	0/1:0,193:31:193:1.00:2	0/1:0,185:31:185:1.00:2	0/1:0,141:31:141:1.00:2	0/1:0,145:30:145:1.00:2	0/1:0,162:30:162:1.00:2
chr5	75932869	rs2910819	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,55:32:55:1.00:2	0/1:1,27:32:28:0.964:2	./.	0/1:2,56:32:58:0.966:2	./.	0/1:2,53:31:55:0.964:2	./.	0/1:24,35:32:59:0.593:2	0/1:0,58:32:58:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,50:32:50:1.00:2
chr5	75932965	rs2455230	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,29:33:29:1.00:2	0/1:1,17:32:18:0.944:2	./.	0/1:1,47:33:48:0.979:2	./.	0/1:0,41:32:41:1.00:2	./.	0/1:15,19:33:34:0.559:2	0/1:0,38:34:38:1.00:2	0/1:1,27:33:28:0.964:2	0/1:0,25:33:25:1.00:2
chr5	75948650	rs2431363	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:32:77:1.00:2	0/1:0,45:31:45:1.00:2	0/1:4,10:32:14:0.714:2	0/1:3,83:32:86:0.965:2	./.	0/1:47,45:32:92:0.489:2	./.	0/1:55,56:32:111:0.505:2	0/1:66,59:33:125:0.472:2	0/1:1,83:32:84:0.988:2	0/1:2,89:32:91:0.978:2
chr5	75960865	rs253093	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:32:45:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,36:33:36:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,45:33:45:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,42:32:42:1.00:2
chr5	75967602	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,49:31:107:0.458:2
chr5	75967722	rs76979655	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,36:31:82:0.439:2	./.	./.	./.	./.	./.
chr5	75993831	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,51:32:107:0.477:2	0/1:41,42:31:83:0.506:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	75996909	rs34592828	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,43:33:86:0.500:2	./.
chr5	76028164	rs149168216	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,6:32:12:0.500:2	./.	./.	./.	./.	./.	./.
chr5	76128521	rs616235	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:32:87:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,70:31:70:1.00:2	0/1:1,54:31:55:0.982:2	0/1:0,87:31:87:1.00:2	0/1:0,76:33:76:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,89:32:89:1.00:2
chr5	76128909	rs115885685	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,15:30:48:0.313:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	76129053	rs631465	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,182:32:182:1.00:2	0/1:0,170:32:170:1.00:2	0/1:0,37:32:37:1.00:2	0/1:1,174:33:175:0.994:2	0/1:0,188:32:188:1.00:2	0/1:0,180:32:180:1.00:2	0/1:0,186:33:186:1.00:2	0/1:1,184:32:185:0.995:2	0/1:0,186:33:186:1.00:2	0/1:0,185:33:185:1.00:2	0/1:0,174:32:174:1.00:2
chr5	76171252	rs1320308	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,54:33:55:0.982:2	0/1:0,23:32:23:1.00:2	0/1:0,13:32:13:1.00:2	0/1:20,24:33:44:0.545:2	0/1:0,51:32:51:1.00:2	0/1:0,67:33:67:1.00:2	0/1:0,79:33:79:1.00:2	0/1:46,24:33:70:0.343:2	0/1:51,37:34:88:0.420:2	0/1:29,27:32:56:0.482:2	0/1:29,30:33:59:0.508:2
chr5	76249503	rs78115247	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,21:28:42:0.500:2	./.	./.	./.	./.
chr5	76259186	rs375907004	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:31:115:0.035:2	./.	./.	./.
chr5	76332468	rs72765108	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:98,5:32:103:0.049:2	./.	./.	0/1:103,7:31:110:0.064:2	./.	0/1:105,7:31:112:0.063:2	0/1:110,6:32:116:0.052:2	0/1:115,13:31:128:0.102:2	./.	./.	./.
chr5	76332539	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:32:85:0.047:2
chr5	76342203	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,7:33:71:0.099:2
chr5	76343999	rs13155212	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,35:33:76:0.461:2	0/1:53,39:32:92:0.424:2	0/1:60,44:34:104:0.423:2	0/1:42,34:34:76:0.447:2	0/1:44,44:33:88:0.500:2
chr5	76359024	rs34400049	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,36:31:74:0.486:2	0/1:22,19:31:41:0.463:2	./.	./.	./.	0/1:45,30:31:75:0.400:2	./.	./.	0/1:45,38:31:83:0.458:2	./.	0/1:58,46:31:104:0.442:2
chr5	76646903	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,12:13:100:0.120:2	./.
chr5	76704849	rs186753	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:32:18:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,11:28:11:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,22:32:22:1.00:2
chr5	76708046	rs140381860	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,50:31:97:0.515:2
chr5	76708987	rs335614	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,12:33:19:0.632:2	0/1:72,61:32:133:0.459:2	0/1:60,53:31:114:0.469:2	0/1:0,136:32:136:1.00:2	0/1:50,70:33:120:0.583:2	0/1:0,153:32:153:1.00:2	0/1:69,72:33:141:0.511:2	0/1:85,63:32:148:0.426:2	0/1:0,172:32:172:1.00:2
chr5	76717741	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:34:162:0.025:2	./.	./.	./.
chr5	76728996	rs72769029	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,86:33:175:0.494:2	./.	./.	./.
chr5	76734084	rs33204	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:32:76:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,10:31:10:1.00:2	0/1:45,44:31:89:0.494:2	0/1:56,37:31:93:0.398:2	./.	./.	0/1:64,65:32:130:0.504:2	0/1:62,51:33:113:0.451:2	./.	./.
chr5	76787984	rs73141049	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,18:30:35:0.514:2	0/1:18,17:30:35:0.486:2	./.	./.	./.	./.
chr5	76926578	rs13357072	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,2:31:2:1.00:2	0/1:0,2:33:2:1.00:2	./.	0/1:0,8:32:8:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,6:32:6:1.00:2	./.
chr5	77004094	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:29:193:0.026:2	./.
chr5	77412011	rs42360	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,9:32:14:0.643:2	0/1:18,7:32:25:0.280:2	./.	./.	./.	./.	./.
chr5	77425028	rs6453373	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,36:32:67:0.537:2	0/1:28,34:32:62:0.548:2	0/1:21,7:30:28:0.250:2	0/1:0,81:31:81:1.00:2	0/1:39,28:31:67:0.418:2	0/1:0,81:31:81:1.00:2	0/1:2,66:32:68:0.971:2	0/1:2,84:31:86:0.977:2	0/1:0,72:33:72:1.00:2	0/1:1,57:32:58:0.983:2	0/1:71,45:31:116:0.388:2
chr5	77425099	rs17192146	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,39:32:106:0.368:2
chr5	77458689	rs75248449	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,42:30:92:0.457:2	./.	./.	./.
chr5	77473165	rs4532349	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:32:12:0.583:2	./.	0/1:57,31:32:88:0.352:2	0/1:47,34:32:81:0.420:2	./.	./.	./.	./.	./.
chr5	77684726	rs3922654	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:43,38:33:81:0.469:2	0/1:35,26:33:61:0.426:2	./.	./.	./.	./.	./.	./.	./.	0/1:59,58:33:117:0.496:2	0/1:66,64:33:130:0.492:2
chr5	77717624	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:196,4:32:200:0.020:2	./.	./.	./.	./.
chr5	77784738	rs2241566	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,26:32:59:0.441:2	0/1:19,13:31:32:0.406:2	0/1:0,7:31:7:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,61:32:61:1.00:2	0/1:1,58:32:59:0.983:2	0/1:35,27:32:62:0.435:2	0/1:0,45:32:45:1.00:2	0/1:26,24:32:50:0.480:2	0/1:39,51:33:90:0.567:2
chr5	78135201	rs25413	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:36,33:32:69:0.478:2	0/1:22,30:32:52:0.577:2	./.	./.	0/1:36,23:31:59:0.390:2	./.	./.	./.	0/1:49,44:32:93:0.473:2	0/1:37,31:32:68:0.456:2	./.
chr5	78181423	rs1071598	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:16,13:32:29:0.448:2	0/1:10,4:31:14:0.286:2	./.	0/1:23,27:30:50:0.540:2	./.	./.	./.	./.	./.	0/1:13,13:33:26:0.500:2	./.
chr5	78181477	rs1065757	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,31:32:73:0.425:2	0/1:58,34:31:92:0.370:2	0/1:2,63:31:65:0.969:2	./.	./.	0/1:33,20:32:53:0.377:2	./.	0/1:0,79:32:79:1.00:2
chr5	78181577	rs72762973	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,26:32:71:0.366:2	./.	./.	./.	./.	./.
chr5	78301172	rs41272262	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,62:32:156:0.400:2	./.	./.	./.
chr5	78324352	rs1805074	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,6:32:14:0.429:2	0/1:0,44:32:44:1.00:2	./.	0/1:0,60:32:60:1.00:2	0/1:38,14:32:52:0.269:2	0/1:29,26:32:55:0.473:2	./.	./.	0/1:35,28:32:63:0.444:2
chr5	78326750	rs1805073	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,9:32:17:0.529:2	0/1:0,98:33:98:1.00:2	./.	0/1:4,106:32:110:0.964:2	0/1:85,50:31:135:0.370:2	0/1:84,68:33:152:0.447:2	./.	./.	0/1:88,52:31:140:0.371:2
chr5	78328560	rs1805072	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,4:31:18:0.222:2	0/1:0,90:31:91:1.00:2	./.	./.	./.	0/1:48,64:31:112:0.571:2	./.	./.	0/1:31,29:32:60:0.483:2
chr5	78340257	rs248385	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,78:32:78:1.00:2	0/1:1,51:32:52:0.981:2	0/1:12,6:32:18:0.333:2	./.	0/1:72,47:31:119:0.395:2	./.	0/1:77,50:33:127:0.394:2	0/1:131,56:32:187:0.299:2	0/1:0,130:33:130:1.00:2	0/1:83,46:33:129:0.357:2	0/1:83,63:33:146:0.432:2
chr5	78340286	rs532964	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,84:32:84:1.00:2	0/1:1,54:32:55:0.982:2	0/1:12,6:32:18:0.333:2	./.	0/1:83,37:32:120:0.308:2	./.	0/1:96,47:32:143:0.329:2	0/1:118,55:32:174:0.318:2	0/1:0,136:34:136:1.00:2	0/1:71,43:33:114:0.377:2	0/1:92,63:32:155:0.406:2
chr5	78351636	rs2253262	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,51:33:51:1.00:2	0/1:0,33:32:33:1.00:2	./.	./.	0/1:23,22:32:45:0.489:2	0/1:0,61:32:61:1.00:2	0/1:0,35:32:35:1.00:2	0/1:44,34:33:78:0.436:2	0/1:0,59:33:59:1.00:2	0/1:17,22:31:39:0.564:2	0/1:1,92:32:93:0.989:2
chr5	78373431	rs682985	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,36:32:36:1.00:2	0/1:1,21:32:22:0.955:2	0/1:3,5:32:8:0.625:2	./.	0/1:22,13:31:35:0.371:2	0/1:0,29:31:29:1.00:2	0/1:0,40:31:40:1.00:2	0/1:28,22:32:50:0.440:2	0/1:0,47:32:47:1.00:2	0/1:22,31:32:53:0.585:2	0/1:0,38:31:38:1.00:2
chr5	78379115	rs59804781	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,9:32:14:0.643:2	0/1:9,7:31:16:0.438:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	78379458	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,6:31:129:0.047:2	./.
chr5	78379459	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,6:31:131:0.046:2	./.
chr5	78379626	rs140286658	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,5:32:72:0.069:2	./.	0/1:92,5:33:98:0.052:2	./.	0/1:74,6:34:80:0.075:2	./.
chr5	78379669	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:30:43:0.093:2	./.	0/1:58,5:30:63:0.079:2	./.	0/1:40,6:32:46:0.130:2	./.
chr5	78384375	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,5:32:172:0.029:2
chr5	78416253	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:31:195:0.026:2	./.	./.	./.	./.
chr5	78416283	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:180,4:32:184:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr5	78417158	rs59866108	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,45:32:87:0.517:2	./.
chr5	78421959	rs3733890	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,11:31:21:0.524:2	0/1:3,143:31:146:0.979:2	./.	0/1:77,62:31:139:0.446:2	0/1:59,84:31:143:0.587:2	0/1:3,186:31:189:0.984:2	./.	./.	0/1:2,132:32:134:0.985:2
chr5	78422011	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:31:125:0.032:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	78423585	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,9:30:102:0.088:2	0/1:155,4:33:159:0.025:2	./.	./.	./.
chr5	78423586	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,9:30:103:0.087:2	0/1:161,4:32:165:0.024:2	./.	./.	./.
chr5	78423753	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,5:28:86:0.058:2	./.
chr5	78423796	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,3:31:34:0.088:2	./.	./.	./.	./.	./.	./.
chr5	78532606	rs375111219	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,9:16:63:0.143:2	0/1:82,17:11:99:0.172:2	0/1:61,9:16:71:0.129:2	./.	0/1:40,9:14:49:0.184:2	./.
chr5	78532658	rs3733893	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,16:29:16:1.00:2	0/1:0,9:31:9:1.00:2	./.	./.	0/1:16,8:31:24:0.333:2	./.	0/1:4,5:31:9:0.556:2	./.	0/1:0,20:33:20:1.00:2	0/1:9,6:32:15:0.400:2	./.
chr5	78573790	rs13182512	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,5:31:9:0.556:2	0/1:0,53:31:53:1.00:2	0/1:31,24:32:55:0.436:2	0/1:0,55:31:55:1.00:2	0/1:25,17:32:42:0.405:2	0/1:0,70:31:70:1.00:2	./.	0/1:24,28:31:52:0.538:2	0/1:0,71:32:71:1.00:2
chr5	78596044	rs10514159	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:85,4:33:89:0.045:2	./.	0/1:4,11:31:15:0.733:2	0/1:0,86:32:86:1.00:2	0/1:60,31:31:91:0.341:2	0/1:4,73:32:77:0.948:2	0/1:43,41:32:84:0.488:2	0/1:1,94:32:95:0.989:2	./.	0/1:27,36:32:63:0.571:2	0/1:0,83:32:83:1.00:2
chr5	78610361	rs61751239	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,40:31:124:0.323:2	0/1:39,25:31:64:0.391:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	79024779	rs16877109	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,35:31:79:0.443:2	./.	./.	./.	./.	0/1:36,48:32:84:0.571:2	./.
chr5	79024915	rs16877111	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,20:29:58:0.345:2	./.	./.	./.	./.	./.	./.
chr5	79025157	rs10942901	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:32,33:32:65:0.508:2	0/1:23,34:32:57:0.596:2	./.	0/1:51,42:31:93:0.452:2	./.	./.	./.	0/1:0,79:32:79:1.00:2	0/1:35,36:33:71:0.507:2	0/1:31,24:31:55:0.436:2	0/1:0,93:31:93:1.00:2
chr5	79025317	rs1366270	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,11:31:31:0.355:2	./.	./.	./.	./.	0/1:17,16:32:33:0.485:2	./.
chr5	79025634	rs1366271	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,65:31:151:0.430:2	./.	./.	./.	./.	0/1:69,64:32:133:0.481:2	./.
chr5	79026360	rs16877124	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,47:31:100:0.470:2	./.	./.	./.	./.	0/1:58,52:31:110:0.473:2	./.
chr5	79026539	rs57544556	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,18:25:45:0.400:2	./.	./.	./.	./.	0/1:21,31:29:52:0.596:2	./.
chr5	79027605	rs6893869	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,16:33:48:0.333:2	./.	./.	./.	./.	0/1:43,33:32:76:0.434:2	./.
chr5	79027700	rs62621915	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,57:33:123:0.463:2	./.
chr5	79027986	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:33:136:0.029:2	./.	./.
chr5	79028472	rs4704585	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:74,72:31:146:0.493:2	0/1:39,26:31:65:0.400:2	./.	0/1:72,60:31:133:0.455:2	0/1:55,44:28:99:0.444:2	./.	0/1:50,33:31:83:0.398:2	0/1:0,102:30:102:1.00:2	0/1:80,69:31:149:0.463:2	0/1:1,78:31:79:0.987:2	0/1:0,142:31:143:1.00:2
chr5	79028513	rs16877133	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,54:33:122:0.443:2	./.
chr5	79028586	rs16877135	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,30:31:73:0.411:2	./.
chr5	79028726	rs13158477	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,19:32:59:0.322:2	./.	./.	./.	./.
chr5	79028891	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,3:33:29:0.103:2	./.
chr5	79029288	rs1428223	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,19:32:57:0.333:2	./.	./.	./.	./.	0/1:31,15:31:46:0.326:2	./.
chr5	79029383	rs1428224	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,9:32:24:0.375:2	./.	./.	./.	./.	0/1:12,12:32:24:0.500:2	./.
chr5	79029531	rs115952199	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,25:32:44:0.568:2	./.
chr5	79029594	rs1019762	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,6:32:18:0.333:2	./.	./.	./.	./.
chr5	79029726	rs16877141	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,14:31:23:0.609:2	./.
chr5	79029749	rs1428225	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,17:29:34:0.500:2	./.	./.	./.	./.	0/1:8,19:27:27:0.704:2	./.
chr5	79030045	rs4639193	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,17:33:42:0.405:2	0/1:18,14:32:32:0.438:2	./.	0/1:24,30:33:54:0.556:2	0/1:22,13:32:35:0.371:2	./.	0/1:11,13:31:24:0.542:2	0/1:0,54:33:54:1.00:2	0/1:31,22:34:53:0.415:2	0/1:0,26:32:26:1.00:2	0/1:0,61:32:61:1.00:2
chr5	79030212	rs16877147	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,28:32:45:0.622:2	./.
chr5	79030338	rs16877150	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,70:32:141:0.496:2	./.
chr5	79030346	rs16877151	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,92:31:190:0.484:2	./.	./.	./.	./.	0/1:71,64:32:135:0.474:2	./.
chr5	79031372	rs6859595	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,11:33:38:0.289:2	./.	./.	./.	./.	0/1:16,11:33:27:0.407:2	./.
chr5	79031558	rs62621912	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:42,32:33:75:0.432:2	0/1:23,19:33:42:0.452:2	./.	0/1:65,34:33:99:0.343:2	./.	./.	./.	0/1:0,79:33:79:1.00:2	0/1:48,47:34:95:0.495:2	0/1:35,26:33:61:0.426:2	0/1:0,95:33:95:1.00:2
chr5	79032666	rs28362541	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,19:33:36:0.528:2	./.
chr5	79032711	rs28362542	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,11:30:22:0.500:2	./.
chr5	79033306	rs2278239	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,31:32:61:0.508:2	./.	./.	./.	./.	0/1:25,31:33:56:0.554:2	./.
chr5	79033391	rs2278240	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,45:34:87:0.517:2	0/1:27,22:33:49:0.449:2	./.
chr5	79034662	rs3828611	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,18:33:46:0.391:2	./.
chr5	79041057	rs12514461	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:49,33:32:82:0.402:2	0/1:19,26:32:45:0.578:2	./.	0/1:46,36:32:82:0.439:2	./.	./.	./.	0/1:3,66:31:70:0.957:2	./.	./.	0/1:1,119:32:120:0.992:2
chr5	79041213	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:32:144:0.028:2	./.
chr5	79048562	rs1366272	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,7:31:21:0.333:2	./.
chr5	79086883	rs1129770	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,8:33:9:0.889:2	./.	0/1:23,25:32:48:0.521:2	./.	./.	./.	./.	./.	0/1:29,47:33:76:0.618:2
chr5	79095299	rs115059007	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,64:30:155:0.413:2	./.	./.	./.	./.	./.	./.
chr5	79095417	rs10043986	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,23:32:49:0.469:2	./.	./.	./.	./.
chr5	79282798	rs9293796	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:28,30:33:58:0.517:2	0/1:16,10:32:26:0.385:2	./.	./.	0/1:26,22:32:48:0.458:2	./.	./.	0/1:41,33:32:74:0.446:2	0/1:50,31:34:81:0.383:2	./.	0/1:37,32:34:69:0.464:2
chr5	79351735	rs423906	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,5:31:7:0.714:2	0/1:41,23:32:64:0.359:2	./.	./.	0/1:38,15:31:53:0.283:2	0/1:40,32:31:72:0.444:2	./.	0/1:29,22:31:51:0.431:2	./.
chr5	79351852	rs438042	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,13:30:15:0.867:2	0/1:2,12:31:14:0.857:2	0/1:2,5:32:7:0.714:2	0/1:21,5:32:26:0.192:2	0/1:24,6:31:30:0.200:2	./.	0/1:0,8:33:8:1.00:2	0/1:1,24:32:25:0.960:2	0/1:0,15:33:15:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,23:32:23:1.00:2
chr5	79355263	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:32:54:0.074:2	./.	./.	./.
chr5	79361265	rs1866389	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:2,96:32:98:0.980:2	0/1:1,73:32:74:0.986:2	./.	./.	0/1:77,46:32:123:0.374:2	./.	0/1:83,76:32:159:0.478:2	0/1:95,82:32:177:0.463:2	0/1:0,137:33:137:1.00:2	0/1:58,79:32:137:0.577:2	0/1:97,83:32:180:0.461:2
chr5	79378253	rs374700914	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:33:174:0.023:2	./.	./.
chr5	79473783	rs55928876	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,18:32:51:0.360:2	./.	./.	./.	./.
chr5	79616059	rs56226654	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,32:30:69:0.464:2	./.	./.	./.	./.	./.	./.	./.
chr5	79616083	rs1862136	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,30:32:82:0.366:2	0/1:21,10:32:31:0.323:2	0/1:8,4:33:12:0.333:2	0/1:0,88:33:88:1.00:2	0/1:0,65:32:65:1.00:2	0/1:63,52:32:115:0.452:2	./.	0/1:68,59:32:127:0.465:2	0/1:0,110:33:110:1.00:2	0/1:48,38:33:86:0.442:2	./.
chr5	79616400	rs200562315	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,4:31:69:0.058:2	./.	./.	./.	./.	./.	./.
chr5	79616461	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:34:124:0.032:2	./.	./.	./.	0/1:85,4:35:89:0.045:2	./.
chr5	79616544	rs2047589	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,33:30:83:0.398:2	./.	./.	./.	0/1:75,50:31:125:0.400:2	./.	./.
chr5	79616936	rs35337118	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,13:33:20:0.650:2	./.	0/1:56,50:32:106:0.472:2	./.	./.	./.	0/1:70,44:33:114:0.386:2	0/1:54,47:33:101:0.465:2	./.
chr5	79617616	rs1500139	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:28,28:32:56:0.500:2	0/1:13,10:31:23:0.435:2	./.	0/1:31,22:31:53:0.415:2	./.	0/1:20,16:29:36:0.444:2	./.	./.	./.	./.	./.
chr5	79617628	rs1052345	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,23:29:39:0.590:2	0/1:5,12:29:17:0.706:2	./.	./.	./.	0/1:19,12:30:31:0.387:2	./.	./.
chr5	79729972	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,4:30:103:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr5	79733079	rs2544600	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,41:32:41:1.00:2	0/1:23,14:32:37:0.378:2	0/1:15,10:32:25:0.400:2	0/1:0,42:32:42:1.00:2	0/1:1,47:32:49:0.979:2	0/1:0,30:32:30:1.00:2	0/1:0,80:32:80:1.00:2
chr5	79734297	rs259028	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:33:77:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,11:32:11:1.00:2	0/1:1,89:32:90:0.989:2	0/1:0,55:32:55:1.00:2	0/1:44,52:32:96:0.542:2	0/1:34,19:32:53:0.358:2	0/1:0,68:33:68:1.00:2	0/1:1,81:33:82:0.988:2	0/1:1,63:32:64:0.984:2	0/1:1,96:32:97:0.990:2
chr5	79734409	rs259029	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,160:33:161:0.994:2	0/1:0,93:32:93:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,153:32:153:1.00:2	0/1:1,113:32:114:0.991:2	0/1:96,86:32:182:0.473:2	0/1:106,46:32:152:0.303:2	0/1:0,185:33:185:1.00:2	0/1:3,152:33:155:0.981:2	0/1:1,136:33:137:0.993:2	0/1:0,176:33:176:1.00:2
chr5	79739097	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:31:117:0.034:2	./.	./.	./.	./.	./.
chr5	79744142	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:33:48:0.083:2
chr5	79745469	rs249038	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,195:33:195:1.00:2	0/1:0,159:32:159:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,186:33:186:1.00:2	0/1:0,188:31:188:1.00:2	0/1:90,101:32:191:0.529:2	0/1:112,88:33:200:0.440:2	0/1:0,187:32:187:1.00:2	0/1:3,192:33:195:0.985:2	0/1:0,193:32:193:1.00:2	0/1:0,186:33:187:1.00:2
chr5	79815658	rs369998	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,13:33:13:1.00:2	0/1:58,39:33:97:0.402:2	0/1:52,61:32:114:0.540:2	0/1:3,124:32:127:0.976:2	0/1:0,124:32:124:1.00:2	0/1:55,73:32:128:0.570:2	0/1:77,69:33:147:0.473:2	0/1:0,117:32:117:1.00:2	0/1:0,141:33:141:1.00:2
chr5	79817900	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:33:90:0.044:2	./.	./.	./.	./.
chr5	79854823	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,4:33:86:0.047:2	./.	./.	./.	./.	./.	./.	./.
chr5	79855372	rs32857	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,175:30:175:1.00:2	0/1:0,84:29:84:1.00:2	0/1:0,28:29:28:1.00:2	0/1:2,193:30:195:0.990:2	0/1:0,148:29:148:1.00:2	0/1:94,103:28:197:0.523:2	0/1:0,185:30:185:1.00:2	0/1:0,197:29:197:1.00:2	0/1:0,191:30:191:1.00:2	0/1:0,176:30:176:1.00:2	0/1:0,191:29:191:1.00:2
chr5	79929758	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,6:33:197:0.030:2	./.
chr5	79933732	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:32:159:0.025:2	./.	./.	./.
chr5	79950745	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.
chr5	79950781	rs1650697	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.
chr5	79966029	rs1805355	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,58:32:127:0.457:2	./.	./.	0/1:61,48:32:109:0.440:2	./.	./.	./.	./.
chr5	80088610	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:33:179:0.022:2
chr5	80149981	rs184967	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,91:29:91:1.00:2	0/1:0,29:28:29:1.00:2	./.	0/1:0,98:29:98:1.00:2	0/1:55,32:28:87:0.368:2	0/1:56,44:27:100:0.440:2	0/1:0,74:29:74:1.00:2	0/1:0,107:28:107:1.00:2	0/1:57,54:29:111:0.486:2	0/1:38,68:29:106:0.642:2	0/1:0,114:28:114:1.00:2
chr5	80168937	rs26279	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,47:33:89:0.528:2	0/1:25,24:32:49:0.490:2	0/1:3,4:32:7:0.571:2	0/1:0,110:32:110:1.00:2	./.	0/1:53,63:32:116:0.543:2	0/1:0,74:32:74:1.00:2	0/1:42,52:32:94:0.553:2	0/1:69,77:33:146:0.527:2	0/1:54,39:32:93:0.419:2	0/1:57,75:32:132:0.568:2
chr5	80369104	rs200188553	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:33:16:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	80390736	rs34039392	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,14:32:35:0.400:2	./.	./.	./.	./.
chr5	80409407	rs16878472	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,59:32:112:0.532:2	./.	./.	./.
chr5	80409526	rs34193571	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,27:32:70:0.386:2	./.	./.	./.	./.	./.
chr5	80409729	rs10942942	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,16:32:16:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,17:32:17:1.00:2	./.	0/1:8,12:34:20:0.600:2	0/1:8,6:34:14:0.429:2	0/1:9,7:34:16:0.438:2
chr5	80502736	rs6453542	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:57,34:30:91:0.374:2	0/1:39,25:30:64:0.391:2	./.	./.	./.	./.	0/1:41,39:29:80:0.488:2	./.	./.	./.	./.
chr5	80508352	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,4:30:81:0.049:2	./.	./.	./.	./.	./.	./.
chr5	80553628	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,42:33:95:0.442:2	./.	./.
chr5	80553659	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:31:103:0.039:2	./.	./.	./.	./.	./.
chr5	80600619	rs16878594	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:43,39:32:82:0.476:2	0/1:29,21:32:50:0.420:2	./.	0/1:56,42:32:98:0.429:2	./.	./.	0/1:4,79:33:83:0.952:2	./.	./.	./.	0/1:61,57:32:118:0.483:2
chr5	80604430	rs1055383	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:32:11:0.545:2	./.	./.	0/1:65,53:32:118:0.449:2	./.	./.	./.	./.	./.
chr5	80631642	rs10371	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:63,36:32:99:0.364:2	0/1:39,15:31:54:0.278:2	./.	./.	./.	./.	0/1:50,33:31:83:0.398:2	0/1:55,49:31:104:0.471:2	./.	./.	./.
chr5	80639703	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:33:46:0.087:2	./.	./.	./.
chr5	80736444	rs9596	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,128:33:128:1.00:2	0/1:0,79:33:79:1.00:2	0/1:0,17:33:17:1.00:2	./.	./.	0/1:0,122:32:122:1.00:2	0/1:59,48:32:108:0.449:2	0/1:0,115:32:115:1.00:2	0/1:62,40:34:103:0.392:2	./.	./.
chr5	80756855	rs111987789	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,7:32:7:1.00:2	./.	0/1:0,2:31:2:1.00:2	./.	./.	0/1:0,12:31:12:1.00:2	0/1:11,3:32:14:0.214:2	0/1:0,7:32:7:1.00:2	0/1:6,5:28:11:0.455:2	./.	./.
chr5	81354389	rs3734114	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,78:33:179:0.436:2	./.	./.
chr5	81549216	rs1864183	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,47:31:117:0.402:2	0/1:39,36:32:75:0.480:2	0/1:17,9:31:26:0.346:2	0/1:64,49:31:113:0.434:2	./.	./.	./.	./.	./.	0/1:63,62:32:125:0.496:2	./.
chr5	81549240	rs1864182	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,37:32:89:0.416:2	0/1:24,23:32:47:0.489:2	0/1:9,5:30:14:0.357:2	0/1:46,40:31:86:0.465:2	./.	./.	0/1:56,32:30:88:0.364:2	./.	./.	0/1:46,37:32:83:0.446:2	0/1:45,41:32:86:0.477:2
chr5	81574182	rs6880209	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,32:30:63:0.516:2	./.	0/1:30,33:29:64:0.524:2	0/1:34,34:30:68:0.500:2	./.	0/1:17,22:30:40:0.564:2
chr5	81608563	rs61740965	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,54:30:123:0.439:2	0/1:38,52:31:90:0.578:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	82352979	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:32:59:0.068:2	./.	./.
chr5	82360867	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:34:140:0.029:2	./.
chr5	82360921	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:30:70:0.057:2	0/1:55,4:31:59:0.068:2	./.	./.	./.	./.
chr5	82491674	rs28360135	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,5:33:24:0.208:2	./.
chr5	82491684	rs56334522	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,10:33:24:0.417:2	./.	./.	./.	./.
chr5	82648943	rs1805377	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:36,32:31:68:0.471:2	0/1:20,14:31:34:0.412:2	0/1:1,4:32:5:0.800:2	./.	./.	./.	0/1:0,34:31:34:1.00:2	0/1:0,42:32:42:1.00:2	./.	./.	./.
chr5	82648977	rs1056503	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:59,45:29:104:0.433:2	0/1:29,25:28:54:0.463:2	0/1:3,10:30:13:0.769:2	./.	./.	./.	0/1:0,68:28:68:1.00:2	0/1:0,98:29:98:1.00:2	./.	./.	./.
chr5	82786194	rs12332199	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,19:29:42:0.452:2	0/1:16,8:28:24:0.333:2	./.	0/1:29,20:29:49:0.408:2	0/1:55,36:30:91:0.396:2	./.	0/1:0,104:30:104:1.00:2	0/1:41,41:30:82:0.500:2	0/1:40,47:30:87:0.540:2	0/1:1,52:29:53:0.981:2	0/1:38,29:29:67:0.433:2
chr5	82789647	rs4470745	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:92,64:32:156:0.410:2	0/1:40,20:32:60:0.333:2	./.	0/1:61,48:33:109:0.440:2	0/1:47,32:30:79:0.405:2	./.	0/1:3,75:31:78:0.962:2	0/1:71,44:31:115:0.383:2	0/1:63,38:33:101:0.376:2	0/1:0,82:31:82:1.00:2	0/1:60,47:32:107:0.439:2
chr5	82815408	rs2287926	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,45:32:92:0.489:2	0/1:18,24:31:42:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	82816284	rs76418670	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:32:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	82816900	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:31:151:0.026:2	./.
chr5	82816958	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:34:128:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	82833145	rs2548541	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,44:32:45:0.978:2	0/1:0,28:32:28:1.00:2	0/1:5,11:29:16:0.688:2	0/1:0,57:32:57:1.00:2	0/1:27,28:31:55:0.509:2	0/1:0,64:31:64:1.00:2	0/1:19,18:32:37:0.486:2	0/1:1,66:31:67:0.985:2	./.	0/1:0,58:32:58:1.00:2	0/1:0,73:32:73:1.00:2
chr5	82833244	rs61733395	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,25:28:49:0.510:2	./.	./.	./.
chr5	82833369	rs309559	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,18:33:37:0.486:2	0/1:12,15:33:27:0.556:2	0/1:2,7:33:9:0.778:2	0/1:0,52:33:52:1.00:2	0/1:23,24:32:47:0.511:2	0/1:0,42:32:42:1.00:2	0/1:25,18:33:43:0.419:2	0/1:28,25:33:53:0.472:2	./.	0/1:28,23:33:51:0.451:2	0/1:35,30:35:65:0.462:2
chr5	82833391	rs16900528	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,27:31:58:0.466:2
chr5	82834299	rs188703	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,44:31:44:1.00:2	0/1:29,15:30:44:0.341:2	0/1:0,41:30:41:1.00:2	0/1:16,17:30:33:0.515:2	0/1:25,19:30:44:0.432:2	./.	0/1:11,13:31:24:0.542:2	./.
chr5	82834630	rs309557	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,9:31:20:0.450:2	./.	./.	0/1:0,16:30:16:1.00:2	0/1:11,16:30:27:0.593:2	0/1:1,20:31:21:0.952:2	0/1:7,12:30:19:0.632:2	0/1:9,12:31:21:0.571:2	./.	0/1:8,6:31:14:0.429:2	0/1:19,13:32:32:0.406:2
chr5	82835545	rs160279	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,15:32:35:0.429:2	0/1:12,11:29:23:0.478:2	./.	0/1:0,31:33:31:1.00:2	0/1:9,11:32:20:0.550:2	0/1:1,28:31:29:0.966:2	0/1:9,13:31:22:0.591:2	0/1:16,14:32:30:0.467:2	./.	0/1:8,10:30:18:0.556:2	0/1:19,19:31:38:0.500:2
chr5	82835724	rs160278	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,28:32:47:0.596:2	0/1:18,10:31:28:0.357:2	0/1:3,5:30:8:0.625:2	0/1:0,55:31:55:1.00:2	0/1:20,14:31:34:0.412:2	0/1:0,55:30:55:1.00:2	0/1:8,16:30:24:0.667:2	0/1:10,19:29:29:0.655:2	./.	0/1:19,12:31:31:0.387:2	0/1:32,25:30:57:0.439:2
chr5	82837094	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,26:31:48:0.542:2	./.	./.	./.	./.	./.
chr5	82837444	rs3096171	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,8:32:16:0.500:2	./.	./.	./.
chr5	82837631	rs160277	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,24:32:25:1.00:2	0/1:9,6:30:15:0.400:2	0/1:0,26:32:26:1.00:2	0/1:4,6:32:10:0.600:2	0/1:16,12:31:28:0.429:2	./.	0/1:7,7:32:14:0.500:2	./.
chr5	82837897	rs113014073	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,28:33:70:0.400:2	./.	./.	./.	./.	./.	./.	./.
chr5	82837926	rs111512368	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,53:32:99:0.535:2	./.	./.	./.
chr5	82875800	rs308365	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:31:41:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,49:32:49:1.00:2
chr5	82937410	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,10:16:130:0.078:2	./.
chr5	82937538	rs6864342	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,96:33:173:0.555:2	./.	./.	./.
chr5	82940273	rs2242128	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,39:31:83:0.470:2	0/1:19,20:30:39:0.513:2	0/1:0,12:32:12:1.00:2	0/1:35,38:32:73:0.521:2	0/1:38,40:32:78:0.513:2	0/1:0,77:32:77:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,90:32:90:1.00:2	0/1:43,35:32:78:0.449:2	0/1:0,56:32:56:1.00:2	0/1:0,84:31:84:1.00:2
chr5	83360520	rs17854833	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,21:33:46:0.457:2	./.	./.	./.	./.
chr5	83402486	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:34:89:0.045:2	./.
chr5	83550010	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,6:29:113:0.053:2	./.	./.	./.	./.	./.	./.	./.
chr5	86676321	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:32:122:0.033:2	./.	./.	./.	./.	./.
chr5	86695274	rs2230641	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,22:32:67:0.328:2	./.	./.	./.	./.	./.	./.
chr5	87498849	rs3097146	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,62:32:111:0.559:2	0/1:38,24:31:62:0.387:2	0/1:6,14:30:20:0.700:2	0/1:62,47:31:109:0.431:2	0/1:0,62:31:62:1.00:2	0/1:0,98:31:98:1.00:2	./.	./.	0/1:85,47:33:132:0.356:2	0/1:4,100:32:104:0.962:2	0/1:1,129:32:130:0.992:2
chr5	87502292	rs62369771	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	./.	./.
chr5	87502325	rs357515	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,6:27:7:0.857:2	0/1:1,8:32:9:0.889:2	./.	0/1:6,5:25:11:0.455:2	0/1:1,7:31:8:0.875:2	0/1:1,9:27:10:0.900:2	0/1:5,4:30:9:0.444:2	./.	0/1:0,6:30:6:1.00:2	0/1:2,11:27:13:0.846:2	0/1:0,18:29:18:1.00:2
chr5	87502950	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:31:118:0.034:2	./.	./.	./.	0/1:144,4:33:148:0.027:2	./.
chr5	87502977	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:31:125:0.032:2	./.
chr5	88044920	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.	./.
chr5	89703641	rs4873	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:36,33:33:69:0.478:2	0/1:20,22:32:42:0.524:2	./.	./.	0/1:22,27:32:49:0.551:2	./.	./.	./.	./.	0/1:29,23:33:52:0.442:2	./.
chr5	89769728	rs2162986	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,13:30:13:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,6:26:6:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,21:33:22:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,21:30:21:1.00:2
chr5	89769834	rs9293544	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,9:30:14:0.643:2	./.	./.	./.
chr5	89769999	rs2115501	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:31:12:0.667:2	./.	./.	0/1:52,53:30:105:0.505:2	./.	0/1:77,67:30:144:0.465:2	0/1:49,50:31:99:0.505:2	./.	./.
chr5	89781403	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:32:106:0.038:2	./.
chr5	89783888	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:33:150:0.027:2	./.	./.	./.
chr5	89815165	rs139750200	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,36:32:80:0.450:2
chr5	89820984	rs10069050	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:68,66:33:134:0.493:2	0/1:46,33:33:79:0.418:2	0/1:6,4:32:10:0.400:2	0/1:80,73:33:153:0.477:2	0/1:1,73:33:74:0.986:2	./.	./.	0/1:70,55:32:125:0.440:2	./.	0/1:0,109:33:109:1.00:2	0/1:61,54:34:115:0.470:2
chr5	89914925	rs41311333	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,100:28:190:0.526:2
chr5	89931092	rs9293547	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,48:32:86:0.558:2	./.	./.	./.
chr5	89943433	rs950692	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,10:31:23:0.435:2	./.	0/1:50,57:30:107:0.533:2	./.	./.	./.	./.	0/1:95,72:32:167:0.431:2	./.
chr5	89943571	rs2366777	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,6:31:18:0.333:2	0/1:6,8:31:14:0.571:2	./.	0/1:0,11:29:11:1.00:2	0/1:9,5:25:14:0.357:2	0/1:0,13:29:13:1.00:2	0/1:0,9:29:9:1.00:2	0/1:1,6:30:7:0.857:2	0/1:0,22:31:22:1.00:2	0/1:6,5:31:11:0.455:2	0/1:9,10:32:19:0.526:2
chr5	89953849	rs17543819	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:47,39:33:86:0.453:2	0/1:23,24:32:47:0.511:2	./.	./.	./.	./.	0/1:40,31:33:71:0.437:2	./.	0/1:46,47:34:93:0.505:2	./.	./.
chr5	89971929	rs10067298	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,36:33:83:0.434:2	./.	./.	./.
chr5	89979518	rs17544552	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:62,47:32:109:0.431:2	0/1:34,29:32:63:0.460:2	./.	./.	./.	./.	0/1:56,70:32:126:0.556:2	./.	0/1:79,67:33:146:0.459:2	./.	./.
chr5	89979589	rs4916684	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,77:32:178:0.433:2	0/1:60,52:32:112:0.464:2	0/1:0,25:31:25:1.00:2	0/1:0,193:31:193:1.00:2	0/1:101,74:31:175:0.423:2	0/1:0,190:31:190:1.00:2	0/1:0,183:32:183:1.00:2	0/1:5,183:31:188:0.973:2	0/1:0,189:32:189:1.00:2	0/1:95,89:32:184:0.484:2	0/1:99,89:32:188:0.473:2
chr5	89979691	rs41303352	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	0/1:22,37:32:59:0.627:2	./.	./.	./.	./.	0/1:26,35:32:61:0.574:2	./.
chr5	89979698	rs4916685	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,31:32:64:0.484:2	./.	0/1:2,74:32:76:0.974:2	0/1:30,19:32:49:0.388:2	./.	./.	./.	0/1:41,50:32:91:0.549:2
chr5	89979750	rs16868972	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,25:30:43:0.595:2	./.	./.	./.	./.	0/1:36,32:31:68:0.471:2	./.
chr5	89985882	rs10037067	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,23:32:23:1.00:2	./.	0/1:0,19:32:19:1.00:2	0/1:14,5:32:19:0.263:2	./.	./.	./.	0/1:14,24:31:38:0.632:2
chr5	89988504	rs2366926	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,76:32:176:0.434:2	./.	0/1:1,173:32:174:0.994:2	0/1:86,50:33:136:0.368:2	./.	./.	./.	0/1:97,94:33:191:0.492:2
chr5	89989779	rs16876822	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,70:32:125:0.560:2	./.	0/1:1,103:31:104:0.990:2	0/1:49,64:31:114:0.566:2	./.	./.	./.	0/1:68,47:32:115:0.409:2
chr5	89989802	rs111033430	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,41:32:81:0.506:2	./.	./.	./.
chr5	89989866	rs77791584	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,39:33:78:0.506:2	./.	./.	./.	./.	./.	./.	./.
chr5	89989975	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,27:31:54:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr5	89990149	rs75191159	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,72:32:141:0.514:2	./.	./.	./.
chr5	89990324	rs1878878	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,51:32:97:0.526:2	0/1:40,26:31:66:0.394:2	0/1:0,12:33:12:1.00:2	0/1:0,94:33:94:1.00:2	0/1:27,31:31:58:0.534:2	0/1:0,74:32:74:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,129:33:129:1.00:2	0/1:0,103:33:103:1.00:2	0/1:52,46:32:98:0.469:2	0/1:83,47:33:130:0.362:2
chr5	90000210	rs16869016	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,7:31:17:0.412:2	./.	0/1:63,70:31:133:0.526:2	./.	./.	./.	./.	./.	./.
chr5	90001368	rs6880570	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,18:32:56:0.321:2	./.	./.	./.	./.	0/1:65,60:33:125:0.480:2	./.
chr5	90012379	rs13157270	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,58:32:138:0.420:2	0/1:66,63:32:129:0.488:2	./.	./.
chr5	90016871	rs16869032	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	0/1:41,32:31:73:0.438:2	./.	./.	./.	./.	0/1:31,36:32:67:0.537:2	./.
chr5	90020923	rs16869042	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,26:29:57:0.456:2	./.	0/1:0,32:29:32:1.00:2	0/1:23,19:28:42:0.452:2	./.	./.	./.	0/1:50,43:30:93:0.462:2
chr5	90021035	rs10067636	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,12:33:41:0.293:2	./.	./.	./.
chr5	90024735	rs2366928	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,30:32:77:0.390:2	0/1:20,18:32:38:0.474:2	0/1:0,3:31:3:1.00:2	0/1:0,97:31:97:1.00:2	0/1:20,17:31:37:0.459:2	0/1:1,49:31:50:0.980:2	0/1:1,66:32:67:0.985:2	0/1:26,37:31:63:0.587:2	0/1:0,74:32:74:1.00:2	0/1:33,29:32:62:0.468:2	0/1:51,54:32:105:0.514:2
chr5	90040890	rs41311343	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,11:29:27:0.423:2	./.	0/1:104,67:30:171:0.392:2	./.	./.	./.	./.	./.	./.
chr5	90052289	rs10062026	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,26:31:66:0.394:2	./.	0/1:1,62:31:63:0.984:2	0/1:50,32:31:82:0.390:2	./.	./.	./.	0/1:46,35:31:81:0.432:2
chr5	90052372	rs2438349	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,6:32:11:0.545:2	0/1:0,69:32:69:1.00:2	./.	0/1:1,69:32:70:0.986:2	0/1:38,29:32:67:0.433:2	0/1:36,36:32:72:0.500:2	0/1:0,88:33:88:1.00:2	./.	0/1:47,33:32:80:0.413:2
chr5	90074397	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr5	90074759	rs35092519	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:89,87:32:176:0.494:2	0/1:77,36:32:113:0.319:2	./.	./.	./.	./.	0/1:89,77:32:167:0.464:2	./.	./.	./.	./.
chr5	90079811	rs41311745	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,28:31:48:0.583:2	./.	./.	./.
chr5	90079820	rs17554631	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,23:30:58:0.397:2	./.	0/1:28,21:30:49:0.429:2	./.	0/1:21,27:30:48:0.563:2	0/1:0,55:31:55:1.00:2	./.	0/1:24,35:31:59:0.593:2
chr5	90107108	rs2438374	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,35:30:61:0.574:2	0/1:16,15:32:31:0.484:2	0/1:0,4:32:4:1.00:2	0/1:1,46:31:47:0.979:2	0/1:0,39:32:39:1.00:2	0/1:0,50:31:50:1.00:2	0/1:30,10:32:40:0.250:2	0/1:0,34:32:34:1.00:2	0/1:0,74:33:74:1.00:2	0/1:1,47:32:48:0.979:2	0/1:0,51:33:51:1.00:2
chr5	90119324	rs2438378	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,149:32:150:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,164:31:164:1.00:2	0/1:1,136:31:137:0.993:2	0/1:0,129:30:129:1.00:2	0/1:0,145:31:145:1.00:2	0/1:0,166:31:166:1.00:2	0/1:0,159:32:159:1.00:2	0/1:0,148:32:148:1.00:2	0/1:0,148:32:148:1.00:2
chr5	90151589	rs2247870	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:100,91:32:191:0.476:2	0/1:70,56:31:126:0.444:2	0/1:0,35:31:35:1.00:2	0/1:106,91:31:197:0.462:2	0/1:121,75:31:196:0.383:2	0/1:97,93:31:190:0.489:2	0/1:105,91:32:196:0.464:2	0/1:108,89:31:197:0.452:2	0/1:0,188:32:188:1.00:2	./.	0/1:112,84:32:196:0.429:2
chr5	90449154	rs13158963	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,16:31:31:0.516:2	./.	./.	0/1:50,4:32:54:0.074:2	0/1:0,46:32:46:1.00:2	0/1:21,27:31:48:0.563:2	./.
chr5	90667244	rs144920190	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,24:31:34:0.706:2	./.	./.	./.	./.	./.	./.	./.
chr5	93159971	rs141777861	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,61:33:138:0.442:2	0/1:48,39:33:87:0.448:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	93722050	rs29913	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,48:30:99:0.485:2	0/1:0,37:30:37:1.00:2	./.	./.	./.	./.	./.	./.
chr5	93731985	rs308207	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,97:32:97:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,95:32:95:1.00:2	0/1:1,63:31:64:0.984:2	0/1:0,90:32:90:1.00:2	0/1:0,122:33:122:1.00:2	0/1:0,93:32:93:1.00:2	0/1:83,84:33:167:0.503:2
chr5	93753017	rs29910	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,32:32:75:0.432:2	0/1:18,12:31:30:0.400:2	./.	0/1:41,35:31:76:0.461:2	0/1:0,35:30:35:1.00:2	./.	./.	./.	./.	./.	0/1:66,35:32:101:0.347:2
chr5	93807200	rs114467120	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:28:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	93812885	rs10057902	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,14:31:36:0.389:2	./.	./.	./.	./.	./.	./.
chr5	93905243	rs75923737	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,4:31:25:0.160:2	./.	./.	./.	0/1:24,3:33:27:0.111:2	./.
chr5	93987532	rs6891545	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:30:5:0.600:2	./.	0/1:1,28:30:29:0.966:2	./.	0/1:14,20:32:34:0.588:2	./.	./.	./.	./.
chr5	94027857	rs377136629	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:32:115:0.035:2	./.
chr5	94030818	rs76504036	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,9:17:51:0.176:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,9:17:76:0.118:2
chr5	94050487	rs2636	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,22:32:55:0.400:2	0/1:23,13:31:36:0.361:2	0/1:3,4:29:7:0.571:2	0/1:2,63:31:65:0.969:2	./.	./.	0/1:46,36:30:82:0.439:2	0/1:50,47:30:97:0.485:2	0/1:43,27:32:70:0.386:2	0/1:21,29:31:50:0.580:2	./.
chr5	94206202	rs159032	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,4:32:20:0.200:2	0/1:87,54:31:141:0.383:2	./.	0/1:81,47:31:128:0.367:2	0/1:62,43:31:106:0.410:2	./.	0/1:76,58:32:134:0.433:2	./.	0/1:65,61:31:126:0.484:2
chr5	94230358	rs9885412	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:68,46:32:114:0.404:2	0/1:56,20:31:76:0.263:2	./.	./.	./.	./.	./.	0/1:113,83:31:196:0.423:2	./.	./.	./.
chr5	94278129	rs293035	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,15:30:29:0.517:2
chr5	94353178	rs181107062	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,12:33:22:0.545:2	./.	./.	./.
chr5	94749723	rs7726891	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,68:32:69:0.986:2	0/1:1,39:32:40:0.975:2	./.	0/1:1,104:31:105:0.990:2	0/1:62,41:31:103:0.398:2	0/1:41,38:31:79:0.481:2	./.	0/1:0,122:32:122:1.00:2	0/1:41,47:32:88:0.534:2	./.	0/1:38,39:32:77:0.506:2
chr5	94749757	rs76962324	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,34:33:72:0.472:2	0/1:30,27:32:57:0.474:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	94749787	rs35391433	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,28:30:64:0.438:2	0/1:23,23:30:46:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	94756010	rs11555275	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:12,5:31:17:0.294:2	0/1:9,8:30:17:0.471:2	./.	0/1:10,9:29:19:0.474:2	./.	./.	./.	./.	./.	./.	./.
chr5	94764366	rs1541797	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,7:33:10:0.700:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	94772540	rs6878669	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:32:39:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,67:32:67:1.00:2
chr5	94818202	rs116690692	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,53:33:135:0.393:2
chr5	94826655	rs2303650	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,9:30:27:0.333:2	./.	./.	./.	./.	0/1:108,88:29:196:0.449:2	./.	./.	0/1:100,91:31:191:0.476:2
chr5	94833109	rs10055673	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,86:32:179:0.480:2
chr5	94852275	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:30:116:0.035:2
chr5	94861118	rs17084873	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:32:16:0.533:2	./.	./.	./.	./.	0/1:61,71:32:132:0.538:2	./.	./.	0/1:85,78:33:163:0.479:2
chr5	94872534	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:33:54:0.074:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	94876439	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.
chr5	94927263	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:32:111:0.036:2	./.	./.
chr5	94939193	rs17084927	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,21:31:43:0.488:2
chr5	94991868	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:31:53:0.075:2	./.	./.	./.	./.	./.
chr5	94991917	rs137960495	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,5:32:53:0.094:2	./.	./.	./.	./.	./.
chr5	94991920	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,5:32:52:0.096:2	./.	./.	./.	./.	./.
chr5	94994339	rs10705	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,65:29:127:0.512:2	0/1:2,89:28:91:0.978:2	./.	./.	./.	./.
chr5	94994467	rs34297786	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,35:30:58:0.603:2	./.	./.	./.	./.	./.	./.	./.
chr5	95018234	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:141,4:31:145:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr5	95084131	rs34896	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,77:32:77:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,12:30:12:1.00:2	./.	./.	./.	0/1:0,66:31:66:1.00:2	0/1:31,35:32:66:0.530:2	0/1:47,36:31:83:0.434:2	./.	0/1:0,87:32:87:1.00:2
chr5	95091194	rs34898	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,104:30:105:0.990:2	0/1:2,75:31:77:0.974:2	0/1:2,11:30:13:0.846:2	./.	0/1:71,41:30:112:0.366:2	./.	0/1:2,102:30:104:0.981:2	0/1:98,76:30:174:0.437:2	0/1:116,70:31:186:0.376:2	./.	0/1:4,176:31:180:0.978:2
chr5	95091201	rs34899	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,99:30:100:0.990:2	0/1:1,76:30:77:0.987:2	0/1:2,11:29:13:0.846:2	./.	0/1:66,38:30:104:0.365:2	./.	0/1:4,95:30:99:0.960:2	0/1:99,78:30:177:0.441:2	0/1:112,66:31:178:0.371:2	./.	0/1:4,170:29:176:0.977:2
chr5	95115959	rs41276257	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,49:31:96:0.510:2	0/1:38,25:31:63:0.397:2	./.	./.	./.	./.	./.	./.
chr5	95152313	rs4561	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,52:31:52:1.00:2	0/1:0,40:31:40:1.00:2	./.	0/1:37,42:30:79:0.532:2	./.	0/1:45,28:30:73:0.384:2	0/1:26,37:30:63:0.587:2	0/1:32,22:30:54:0.407:2	0/1:0,75:31:75:1.00:2	0/1:36,27:31:63:0.429:2	0/1:1,77:32:78:0.987:2
chr5	95234350	rs3777204	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,41:30:74:0.554:2	0/1:29,13:32:42:0.310:2	./.	./.	./.	0/1:63,33:31:96:0.344:2	./.	0/1:68,26:29:94:0.277:2	./.	0/1:49,31:29:80:0.388:2	./.
chr5	95234377	rs3777203	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,55:30:144:0.385:2	./.	0/1:93,41:31:134:0.306:2	./.	0/1:63,48:30:111:0.432:2	./.
chr5	95234392	rs3777202	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:30:9:0.444:2	./.	./.	0/1:100,61:29:161:0.379:2	./.	0/1:95,40:29:135:0.296:2	./.	0/1:66,48:29:114:0.421:2	./.
chr5	95234444	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,5:34:133:0.038:2	./.	./.
chr5	95236415	rs17085249	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:32:16:0.375:2	./.	./.	0/1:48,38:30:86:0.442:2	./.	0/1:67,32:31:99:0.323:2	./.	0/1:55,44:33:99:0.444:2	./.
chr5	95236459	rs3815768	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:31:14:0.429:2	./.	./.	0/1:33,35:29:68:0.515:2	./.	0/1:63,25:30:88:0.284:2	./.	0/1:46,34:30:80:0.425:2	./.
chr5	95242255	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:32:117:0.034:2	./.	./.
chr5	95278679	rs3734131	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	0/1:70,34:29:104:0.327:2	./.	0/1:66,60:31:126:0.476:2	./.	0/1:51,32:32:83:0.386:2	./.
chr5	95278729	rs146249322	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,43:32:121:0.355:2	./.	./.	./.	0/1:54,35:32:89:0.393:2	./.
chr5	95728898	rs6235	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,15:33:27:0.556:2	0/1:107,86:32:193:0.446:2	./.	0/1:118,74:32:192:0.385:2	0/1:74,69:33:143:0.483:2	0/1:114,75:32:189:0.397:2	./.	0/1:92,103:32:195:0.528:2	./.
chr5	95728961	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,78:31:166:0.470:2
chr5	95728974	rs6234	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,7:30:10:0.700:2	0/1:63,43:29:106:0.406:2	./.	0/1:69,53:28:122:0.434:2	0/1:63,48:30:111:0.432:2	0/1:84,46:29:130:0.354:2	./.	0/1:42,50:29:92:0.543:2	./.
chr5	95733112	rs6233	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:47,55:32:102:0.539:2	0/1:31,24:32:55:0.436:2	./.	0/1:81,37:33:118:0.314:2	0/1:49,41:32:90:0.456:2	./.	0/1:61,43:32:104:0.413:2	./.	./.	./.	0/1:61,56:32:117:0.479:2
chr5	96031569	rs9667	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:42,33:30:76:0.440:2	0/1:28,21:32:49:0.429:2	0/1:5,4:31:9:0.444:2	./.	./.	./.	0/1:61,40:32:101:0.396:2	0/1:50,43:32:93:0.462:2	0/1:65,49:34:114:0.430:2	0/1:34,48:32:82:0.585:2	0/1:63,54:32:117:0.462:2
chr5	96076487	rs7724759	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:86,43:33:129:0.333:2	0/1:48,34:33:82:0.415:2	./.	./.	0/1:53,36:32:89:0.404:2	./.	0/1:44,44:32:88:0.500:2	./.	./.	./.	./.
chr5	96079387	rs26505	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:21,26:32:47:0.553:2	0/1:19,16:32:35:0.457:2	./.	./.	./.	./.	0/1:65,38:31:103:0.369:2	0/1:53,49:32:102:0.480:2	./.	0/1:51,34:31:85:0.400:2	0/1:26,45:32:71:0.634:2
chr5	96079402	rs26506	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,45:32:48:0.938:2	0/1:4,29:32:33:0.879:2	./.	0/1:0,93:31:93:1.00:2	0/1:47,39:32:86:0.453:2	./.	0/1:0,90:31:90:1.00:2	0/1:52,45:31:97:0.464:2	0/1:50,36:32:86:0.419:2	0/1:51,33:31:84:0.393:2	0/1:0,66:31:66:1.00:2
chr5	96086334	rs754615	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:25,21:32:46:0.457:2	0/1:11,11:32:22:0.500:2	./.	./.	0/1:11,19:33:30:0.633:2	./.	0/1:18,25:32:43:0.581:2	./.	0/1:32,20:32:52:0.385:2	./.	./.
chr5	96093138	rs2290677	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,25:33:61:0.410:2	./.	./.
chr5	96093222	rs27654	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:99,90:32:189:0.476:2	0/1:66,40:32:106:0.377:2	0/1:13,9:32:22:0.409:2	./.	./.	0/1:115,80:32:195:0.410:2	0/1:103,82:31:185:0.443:2	0/1:1,180:32:181:0.994:2	0/1:99,98:33:197:0.497:2	0/1:100,92:32:192:0.479:2	0/1:99,88:33:187:0.471:2
chr5	96101838	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,5:28:97:0.052:2	./.	./.	./.	./.	./.	./.	./.
chr5	96116808	rs17481856	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,30:31:63:0.476:2	./.	./.	./.	./.	./.	./.	./.
chr5	96117555	rs61745685	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:29:5:0.600:2	./.	./.	./.	./.
chr5	96118852	rs27044	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,128:31:128:1.00:2	0/1:0,74:32:74:1.00:2	0/1:5,7:32:12:0.583:2	0/1:68,93:33:161:0.578:2	0/1:102,69:31:171:0.404:2	0/1:89,88:31:177:0.497:2	0/1:0,141:31:142:1.00:2	0/1:0,170:31:171:1.00:2	0/1:0,147:32:147:1.00:2	0/1:66,85:31:151:0.563:2	0/1:2,148:31:150:0.987:2
chr5	96118866	rs17482078	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:81,45:32:126:0.357:2	0/1:37,39:32:76:0.513:2	./.	./.	0/1:99,65:31:164:0.396:2	./.	./.	./.	./.	./.	./.
chr5	96121524	rs469783	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,65:31:67:0.970:2	0/1:1,33:32:34:0.971:2	0/1:5,8:32:13:0.615:2	0/1:57,46:31:103:0.447:2	0/1:53,61:31:114:0.535:2	0/1:49,48:31:97:0.495:2	0/1:63,50:32:113:0.442:2	0/1:0,112:31:113:1.00:2	0/1:49,57:32:106:0.538:2	0/1:45,48:31:93:0.516:2	0/1:0,76:32:76:1.00:2
chr5	96122210	rs10050860	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:28,25:32:53:0.472:2	0/1:30,22:32:52:0.423:2	./.	./.	0/1:26,29:32:55:0.527:2	./.	./.	./.	./.	./.	./.
chr5	96122260	rs30379	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:34:45:1.00:2	0/1:0,39:32:40:1.00:2	0/1:7,6:33:13:0.462:2	0/1:38,35:32:73:0.479:2	0/1:35,23:32:58:0.397:2	0/1:36,37:32:73:0.507:2	0/1:2,40:33:42:0.952:2	0/1:1,86:33:87:0.989:2	0/1:50,43:33:94:0.462:2	0/1:16,29:33:45:0.644:2	0/1:0,86:33:86:1.00:2
chr5	96124330	rs30187	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,116:33:117:0.991:2	0/1:0,68:32:68:1.00:2	0/1:24,6:32:30:0.200:2	0/1:103,85:33:188:0.452:2	0/1:134,60:32:194:0.309:2	0/1:125,66:33:191:0.346:2	0/1:2,156:33:158:0.987:2	0/1:1,185:33:186:0.995:2	0/1:101,72:34:173:0.416:2	0/1:100,79:33:180:0.441:2	0/1:0,140:33:140:1.00:2
chr5	96126308	rs27529	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,67:30:69:0.971:2	0/1:1,48:29:49:0.980:2	./.	0/1:46,48:29:94:0.511:2	0/1:31,18:30:49:0.367:2	0/1:40,25:28:65:0.385:2	0/1:1,46:29:47:0.979:2	0/1:0,86:29:86:1.00:2	0/1:42,32:30:74:0.432:2	0/1:49,38:30:87:0.437:2	0/1:0,97:29:97:1.00:2
chr5	96127833	rs3213809	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,36:31:70:0.514:2	./.	./.	./.	./.	./.	./.	./.
chr5	96129512	rs27434	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,94:32:96:0.979:2	0/1:3,44:31:47:0.936:2	0/1:0,18:29:18:1.00:2	0/1:0,115:32:115:1.00:2	0/1:57,39:31:96:0.406:2	0/1:99,47:31:146:0.322:2	0/1:1,85:31:86:0.988:2	0/1:1,126:32:127:0.992:2	0/1:97,47:32:144:0.326:2	0/1:58,40:29:98:0.408:2	0/1:0,157:31:157:1.00:2
chr5	96129535	rs2287987	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:58,58:33:116:0.500:2	0/1:36,23:31:59:0.390:2	./.	./.	0/1:70,52:31:122:0.426:2	./.	./.	./.	./.	./.	./.
chr5	96129543	rs27895	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,10:31:22:0.455:2	./.	./.	0/1:128,69:31:197:0.350:2	./.	./.	./.	./.	./.
chr5	96130836	rs26618	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:20,8:30:28:0.286:2	0/1:16,18:33:34:0.529:2	./.	0/1:22,17:33:39:0.436:2	./.	./.	0/1:11,16:31:27:0.593:2	0/1:0,33:32:33:1.00:2	0/1:13,22:34:35:0.629:2	0/1:17,12:33:29:0.414:2	0/1:0,53:33:53:1.00:2
chr5	96139250	rs26653	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,71:32:72:0.986:2	0/1:0,31:31:31:1.00:2	0/1:11,7:32:18:0.389:2	0/1:0,58:32:58:1.00:2	0/1:26,24:31:50:0.480:2	./.	0/1:0,57:32:57:1.00:2	0/1:0,74:32:74:1.00:2	0/1:55,41:33:96:0.427:2	0/1:41,27:31:68:0.397:2	0/1:3,80:32:83:0.964:2
chr5	96139595	rs72773968	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,5:32:11:0.455:2	0/1:30,39:31:69:0.565:2	./.	./.	./.	./.	./.	./.	./.
chr5	96215680	rs41506651	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:32:7:0.714:2	./.	./.	./.	0/1:41,30:32:71:0.423:2	./.	./.	./.	./.
chr5	96215686	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2
chr5	96228072	rs75263594	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,78:31:171:0.456:2	./.	./.	./.	0/1:77,75:32:152:0.493:2	./.
chr5	96231000	rs2549782	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:59,54:33:113:0.478:2	0/1:26,20:32:46:0.435:2	0/1:0,11:32:11:1.00:2	./.	0/1:0,65:31:65:1.00:2	0/1:2,98:31:100:0.980:2	0/1:58,58:32:116:0.500:2	0/1:75,76:32:151:0.503:2	0/1:69,58:33:127:0.457:2	0/1:41,58:32:99:0.586:2	./.
chr5	96232142	rs2548538	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:55,38:32:93:0.409:2	0/1:34,37:31:71:0.521:2	0/1:0,6:30:6:1.00:2	./.	0/1:0,48:31:48:1.00:2	0/1:0,73:31:73:1.00:2	0/1:30,34:32:64:0.531:2	0/1:33,30:32:63:0.476:2	0/1:71,56:32:128:0.441:2	0/1:50,36:32:87:0.419:2	./.
chr5	96235896	rs2248374	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:46,37:33:83:0.446:2	0/1:35,32:32:67:0.478:2	0/1:0,6:33:6:1.00:2	./.	0/1:1,61:31:62:0.984:2	0/1:0,66:32:66:1.00:2	0/1:37,36:33:73:0.493:2	0/1:34,37:33:71:0.521:2	0/1:31,41:34:72:0.569:2	0/1:53,40:32:93:0.430:2	./.
chr5	96237326	rs2287988	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,12:33:26:0.462:2	0/1:8,5:32:13:0.385:2	./.	./.	0/1:0,13:31:13:1.00:2	0/1:1,22:32:23:0.957:2	0/1:5,10:32:15:0.667:2	0/1:8,13:31:21:0.619:2	0/1:13,12:33:25:0.480:2	0/1:11,5:32:17:0.313:2	./.
chr5	96245343	rs2549796	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:81,66:31:147:0.449:2	0/1:56,47:31:103:0.456:2	0/1:0,19:31:19:1.00:2	./.	0/1:2,162:30:164:0.988:2	0/1:1,134:31:135:0.993:2	0/1:89,80:31:169:0.473:2	0/1:83,61:31:144:0.424:2	0/1:88,88:31:176:0.500:2	0/1:74,101:31:175:0.577:2	./.
chr5	96245439	rs1056893	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:41,50:32:91:0.549:2	0/1:34,27:32:61:0.443:2	0/1:0,26:31:26:1.00:2	./.	0/1:1,69:32:70:0.986:2	0/1:1,106:31:107:0.991:2	0/1:68,41:32:109:0.376:2	0/1:55,45:32:100:0.450:2	0/1:50,61:33:111:0.550:2	0/1:49,69:32:118:0.585:2	./.
chr5	96249115	rs2255546	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:54,36:32:90:0.400:2	0/1:34,27:31:61:0.443:2	0/1:0,10:31:10:1.00:2	./.	0/1:1,76:31:77:0.987:2	0/1:3,108:31:111:0.973:2	0/1:46,43:31:89:0.483:2	0/1:58,57:32:115:0.496:2	0/1:68,45:33:113:0.398:2	0/1:68,54:32:122:0.443:2	0/1:180,4:32:185:0.022:2
chr5	96315223	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:31:112:0.036:2	./.	./.	./.	./.
chr5	96341912	rs72775875	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,4:29:15:0.267:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	96350710	rs2303138	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,22:30:65:0.338:2	./.	./.	./.	./.	./.	./.
chr5	96363459	rs11746232	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,18:27:64:0.281:2	./.	./.	./.	./.	./.
chr5	96498783	rs8654	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,40:31:40:1.00:2	0/1:0,13:31:13:1.00:2	./.	0/1:0,35:30:35:1.00:2	0/1:12,12:29:24:0.500:2	0/1:29,18:30:47:0.383:2	0/1:0,32:31:32:1.00:2	0/1:0,40:31:40:1.00:2	./.	0/1:29,17:31:46:0.370:2	0/1:0,41:31:41:1.00:2
chr5	96503378	rs12188395	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,25:32:39:0.641:2	0/1:8,9:31:17:0.529:2	./.	./.	./.	./.	./.	./.
chr5	96503523	rs160632	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,106:33:107:0.991:2	0/1:0,79:32:79:1.00:2	0/1:2,9:33:11:0.818:2	0/1:0,131:32:131:1.00:2	0/1:42,42:32:84:0.500:2	0/1:61,54:32:115:0.470:2	0/1:4,91:32:95:0.958:2	0/1:0,112:32:112:1.00:2	./.	0/1:46,51:33:97:0.526:2	0/1:1,144:33:145:0.993:2
chr5	96506959	rs33996030	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,34:31:75:0.453:2	./.
chr5	96512865	rs2548319	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,74:32:76:0.974:2	0/1:2,51:32:53:0.962:2	0/1:7,5:31:12:0.417:2	0/1:3,110:31:113:0.973:2	0/1:1,64:31:65:0.985:2	0/1:60,41:31:101:0.406:2	0/1:0,71:32:71:1.00:2	0/1:1,109:31:110:0.991:2	./.	0/1:59,37:32:96:0.385:2	0/1:0,118:31:118:1.00:2
chr5	96512871	rs2544772	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,80:33:82:0.976:2	0/1:2,57:32:59:0.966:2	0/1:7,5:31:12:0.417:2	0/1:5,116:32:121:0.959:2	0/1:0,66:32:66:1.00:2	0/1:69,48:32:117:0.410:2	0/1:0,72:32:72:1.00:2	0/1:0,124:32:124:1.00:2	./.	0/1:63,38:32:101:0.376:2	0/1:1,126:32:127:0.992:2
chr5	96513471	rs2544773	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,56:32:56:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,9:32:9:1.00:2	./.	./.	0/1:43,44:32:87:0.506:2	0/1:0,62:32:62:1.00:2	0/1:2,96:32:98:0.980:2	./.	0/1:39,46:32:85:0.541:2	0/1:57,53:33:110:0.482:2
chr5	96518822	rs201597178	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,12:11:64:0.188:2	./.	./.	./.	./.
chr5	98115642	rs76606616	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:50,10:22:60:0.167:2	./.	./.	0/1:48,8:17:56:0.143:2	./.	0/1:38,9:18:47:0.191:2	0/1:51,14:16:65:0.215:2	0/1:61,20:17:81:0.247:2	0/1:72,17:17:89:0.191:2	0/1:42,12:19:54:0.222:2	0/1:76,20:19:96:0.208:2
chr5	98199204	rs161941	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,24:31:62:0.387:2	0/1:31,23:32:54:0.426:2	0/1:15,6:31:21:0.286:2	0/1:63,40:32:103:0.388:2	0/1:44,34:31:78:0.436:2	./.	0/1:30,14:32:44:0.318:2	./.	./.	./.	./.
chr5	99871359	rs139985000	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,25:29:48:0.521:2	./.	./.	./.	./.	./.
chr5	99897866	rs6874840	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:78,68:32:146:0.466:2	0/1:64,64:32:128:0.500:2	./.	0/1:87,80:32:167:0.479:2	0/1:89,60:31:149:0.403:2	./.	0/1:78,66:32:144:0.458:2	0/1:75,74:32:149:0.497:2	./.	0/1:1,122:32:123:0.992:2	./.
chr5	99921841	rs2370612	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,25:33:25:1.00:2	0/1:0,20:33:20:1.00:2	./.	0/1:17,8:32:25:0.320:2	0/1:0,11:32:11:1.00:2	0/1:14,10:31:24:0.417:2	./.	0/1:13,5:32:18:0.278:2	0/1:20,13:33:33:0.394:2	0/1:0,14:33:14:1.00:2	0/1:21,16:31:37:0.432:2
chr5	100222277	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,37:30:109:0.339:2	./.	./.
chr5	101575091	rs62370437	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,28:31:28:1.00:2	0/1:0,14:31:14:1.00:2	./.	./.	0/1:0,12:31:12:1.00:2	0/1:17,7:32:24:0.292:2	./.	0/1:6,9:31:15:0.600:2	0/1:24,7:33:31:0.226:2	0/1:14,13:33:27:0.481:2	0/1:0,28:32:28:1.00:2
chr5	101627295	rs199962705	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,3:33:49:0.061:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	101631761	rs76381196	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,36:33:58:0.621:2	./.	./.	./.	./.	./.	./.	./.
chr5	101631790	rs10479190	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,9:29:26:0.346:2	0/1:1,42:30:43:0.977:2	./.	./.	./.	0/1:0,28:29:28:1.00:2	0/1:0,41:29:41:1.00:2
chr5	101724448	rs10055840	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,43:32:102:0.426:2	0/1:1,152:32:153:0.993:2	./.	./.	./.	0/1:0,111:33:111:1.00:2	0/1:0,166:33:166:1.00:2
chr5	101724472	rs72779942	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:81,48:33:129:0.372:2	0/1:48,42:33:90:0.467:2	./.	0/1:107,85:33:192:0.443:2	./.	./.	./.	./.	./.	./.	./.
chr5	101748741	rs10073333	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:33:7:0.571:2	./.	0/1:30,20:32:50:0.400:2	./.	./.	./.	./.	./.	./.
chr5	101774455	rs17150488	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	0/1:14,18:32:32:0.563:2	./.	./.	./.	./.	./.	./.
chr5	101811443	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:33:60:0.067:2	./.
chr5	101815888	rs150189521	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,20:32:46:0.435:2	./.	./.	./.	./.	./.
chr5	101816104	rs6884141	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:61,56:31:117:0.479:2	0/1:33,27:31:60:0.450:2	0/1:6,5:31:11:0.455:2	./.	./.	./.	./.	0/1:43,41:31:84:0.488:2	0/1:0,85:32:86:1.00:2	./.	./.
chr5	102202998	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:31:62:0.065:2	./.	./.	./.	./.
chr5	102338811	rs35658696	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,48:33:85:0.565:2	./.	./.
chr5	102345546	rs2230457	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,8:29:22:0.364:2	./.	0/1:9,15:28:24:0.625:2	./.	0/1:32,28:27:60:0.467:2
chr5	102433409	rs34813	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,20:32:64:0.313:2	./.	0/1:40,48:32:88:0.545:2	./.	0/1:62,51:33:115:0.451:2
chr5	102520400	rs26821	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,17:30:41:0.415:2	0/1:43,28:29:71:0.394:2	0/1:36,42:31:78:0.538:2	./.	./.
chr5	102537285	rs36046591	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,69:33:148:0.466:2	./.	./.
chr5	102612399	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,3:28:20:0.150:2	./.
chr5	102613540	rs113949762	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,63:32:127:0.496:2	0/1:53,24:32:77:0.312:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	102614327	rs35797	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:51,50:32:101:0.495:2	0/1:21,23:32:44:0.523:2	./.	0/1:50,34:32:84:0.405:2	./.	0/1:41,38:31:79:0.481:2	0/1:43,31:32:74:0.419:2	0/1:64,32:32:96:0.333:2	0/1:53,39:33:92:0.424:2	./.	0/1:64,43:32:107:0.402:2
chr5	102891695	rs10045774	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:33:72:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,58:31:58:1.00:2	0/1:32,46:32:79:0.590:2	0/1:36,25:32:61:0.410:2	0/1:56,15:34:71:0.211:2	0/1:0,91:34:91:1.00:2	0/1:36,22:33:58:0.379:2	0/1:33,41:33:74:0.554:2
chr5	102894652	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,4:32:76:0.053:2	./.	./.	./.	./.	./.	./.	./.
chr5	102894673	rs34468716	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,44:32:84:0.524:2	./.	./.	./.	0/1:39,42:32:81:0.519:2	./.
chr5	102894977	rs7734923	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,66:32:67:0.985:2	0/1:0,31:31:31:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,50:32:50:1.00:2	./.	./.	./.	./.	0/1:32,27:33:59:0.458:2	0/1:17,22:31:39:0.564:2	./.
chr5	102895124	rs7723689	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:32:71:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,7:30:7:1.00:2	0/1:1,105:31:106:0.991:2	./.	./.	./.	./.	0/1:51,44:31:95:0.463:2	0/1:42,46:31:88:0.523:2	./.
chr5	107197420	rs61749621	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	0/1:28,27:31:55:0.491:2	0/1:42,13:31:55:0.236:2	./.	0/1:20,18:32:38:0.474:2	./.
chr5	107197502	rs34990078	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.	./.	0/1:52,48:32:100:0.480:2	0/1:58,30:32:88:0.341:2	./.	0/1:23,24:33:47:0.511:2	./.
chr5	107197543	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,4:29:102:0.039:2	./.	./.	./.	./.	./.	./.
chr5	107356690	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,4:30:33:0.121:2	./.	./.	./.	./.
chr5	107703601	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:85,4:33:89:0.045:2	./.	./.	./.	./.	./.	./.
chr5	107717376	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.
chr5	108133967	rs2229085	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,45:31:107:0.421:2	./.	./.	0/1:39,58:33:97:0.598:2	0/1:30,32:32:62:0.516:2	./.
chr5	108171483	rs55954478	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,31:32:82:0.378:2	./.	./.
chr5	108203526	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,14:30:28:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	108290631	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,4:31:111:0.036:2	./.	./.	./.	./.	./.	./.	./.
chr5	108373106	rs3822684	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,33:30:87:0.379:2	./.	./.	./.	./.	0/1:0,89:31:89:1.00:2	./.
chr5	108380419	rs919771	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,45:32:108:0.421:2	./.	./.	./.	./.	0/1:0,126:33:126:1.00:2	./.
chr5	108672946	rs246105	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,76:31:154:0.494:2	./.	./.	0/1:106,93:31:199:0.467:2	0/1:104,92:31:196:0.469:2	0/1:100,59:32:159:0.371:2	./.	./.
chr5	108704313	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:32:96:0.042:2	./.
chr5	108713970	rs10042721	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,158:33:159:0.994:2	0/1:1,104:32:105:0.990:2	0/1:0,23:32:23:1.00:2	0/1:121,77:32:198:0.389:2	0/1:2,175:32:177:0.989:2	0/1:0,186:32:186:1.00:2	0/1:131,55:32:186:0.296:2	0/1:120,77:32:198:0.391:2	0/1:111,85:33:197:0.434:2	0/1:0,182:32:182:1.00:2	0/1:0,186:33:186:1.00:2
chr5	108713982	rs12523186	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,160:30:161:0.994:2	0/1:1,106:30:107:0.991:2	0/1:0,27:30:27:1.00:2	0/1:114,70:31:184:0.380:2	./.	./.	0/1:132,49:30:181:0.271:2	0/1:115,77:30:192:0.401:2	0/1:112,73:31:185:0.395:2	0/1:0,184:30:184:1.00:2	0/1:102,88:30:190:0.463:2
chr5	108713984	rs34621137	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,49:31:180:0.272:2	./.	./.	./.	./.
chr5	108714298	rs1045706	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,120:30:120:1.00:2	0/1:0,88:29:88:1.00:2	0/1:0,20:28:20:1.00:2	0/1:77,76:29:153:0.497:2	./.	./.	0/1:58,70:29:128:0.547:2	0/1:83,63:29:146:0.432:2	0/1:91,70:30:161:0.435:2	0/1:3,145:29:148:0.980:2	0/1:92,82:29:174:0.471:2
chr5	108719151	rs1045704	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,37:31:39:0.949:2	0/1:0,28:31:28:1.00:2	0/1:0,4:30:4:1.00:2	0/1:34,16:29:50:0.320:2	./.	./.	0/1:33,10:29:43:0.233:2	0/1:34,24:31:58:0.414:2	0/1:28,36:31:64:0.563:2	0/1:2,34:31:36:0.944:2	0/1:29,20:31:49:0.408:2
chr5	109110537	rs6894260	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,28:31:28:1.00:2	0/1:0,18:31:18:1.00:2	./.	./.	0/1:12,11:31:23:0.478:2	0/1:11,18:31:29:0.621:2	0/1:13,6:32:19:0.316:2	./.	0/1:12,22:32:34:0.647:2	./.	0/1:2,39:30:41:0.951:2
chr5	109110591	rs61735369	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,9:33:17:0.529:2	0/1:22,15:32:37:0.405:2	./.	./.	./.	./.	./.
chr5	109117171	rs13189822	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,26:33:58:0.448:2	./.	./.	0/1:19,24:32:43:0.558:2	./.	./.	0/1:24,15:33:39:0.385:2	./.
chr5	109120530	rs192472424	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,97:32:198:0.490:2	./.	./.	./.
chr5	109181682	rs3186988	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:32:92:1.00:2	0/1:1,64:32:65:0.985:2	0/1:10,5:32:15:0.333:2	0/1:68,53:32:121:0.438:2	0/1:68,53:31:121:0.438:2	0/1:0,121:32:121:1.00:2	0/1:0,132:32:132:1.00:2	0/1:91,38:32:129:0.295:2	0/1:103,67:33:170:0.394:2	0/1:62,32:32:94:0.340:2	0/1:0,148:32:148:1.00:2
chr5	109760621	rs17132118	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,21:30:61:0.344:2	./.	./.	./.	./.	./.
chr5	109940820	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:27:60:0.067:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	109941012	rs6861741	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,30:31:63:0.476:2	./.	./.	./.	./.	./.
chr5	109941887	rs73224392	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,46:31:152:0.303:2	./.	./.	./.	./.	./.
chr5	109960989	rs61730920	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,72:30:174:0.414:2
chr5	109963510	rs61732341	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,26:32:57:0.456:2	./.	./.	./.	./.	./.
chr5	109973902	rs1422495	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,40:33:96:0.417:2
chr5	109973945	rs78510152	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,42:30:94:0.447:2	./.	./.	./.	./.	./.
chr5	110079450	rs17446534	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,95:32:195:0.487:2
chr5	110082014	rs35220834	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,42:30:110:0.382:2	./.	./.	./.	./.	./.
chr5	110096939	rs7724788	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,5:32:9:0.556:2	0/1:62,45:31:107:0.421:2	./.	./.	./.	./.	./.	./.	./.
chr5	110432820	rs148990528	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,73:30:190:0.384:2	./.	./.
chr5	110436345	rs142088179	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,45:32:86:0.523:2	./.	./.
chr5	110436346	rs145835374	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,45:32:86:0.523:2	./.	./.
chr5	110439509	rs11241095	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,43:32:127:0.339:2	0/1:38,34:31:72:0.472:2	./.	./.	./.	0/1:57,71:32:128:0.555:2	0/1:45,49:32:94:0.521:2	0/1:99,73:32:172:0.424:2	./.	0/1:69,48:32:117:0.410:2	0/1:101,87:32:188:0.463:2
chr5	110456263	rs17624563	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:33:5:0.600:2	./.	0/1:26,17:32:43:0.395:2	./.	./.	./.	./.	./.	0/1:33,27:33:60:0.450:2
chr5	110456704	rs13186912	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,34:31:58:0.586:2	0/1:11,11:32:22:0.500:2	./.	./.	./.	0/1:51,17:31:68:0.250:2	0/1:29,20:30:49:0.408:2	0/1:33,16:32:49:0.327:2	./.	0/1:29,29:31:58:0.500:2	0/1:49,35:31:84:0.417:2
chr5	110679726	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:33:44:0.091:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	110784822	rs2116824	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,192:33:192:1.00:2	0/1:3,155:33:158:0.981:2	./.	0/1:2,190:33:192:0.990:2	0/1:101,92:32:193:0.477:2	0/1:0,192:33:192:1.00:2	0/1:0,198:33:198:1.00:2	0/1:112,84:33:196:0.429:2	0/1:121,76:34:197:0.386:2	0/1:3,193:33:196:0.985:2	0/1:119,76:33:195:0.390:2
chr5	110819753	rs25925	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,90:32:91:0.989:2	0/1:0,54:32:54:1.00:2	./.	0/1:0,116:32:116:1.00:2	0/1:73,63:32:136:0.463:2	0/1:1,110:32:111:0.991:2	0/1:0,138:32:138:1.00:2	0/1:98,59:32:157:0.376:2	0/1:73,59:32:133:0.447:2	0/1:0,81:32:81:1.00:2	0/1:59,53:32:112:0.473:2
chr5	110835762	rs146729717	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,11:32:22:0.500:2	./.	./.	./.
chr5	111066697	rs11559	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,44:33:85:0.518:2	./.	./.	./.	./.	./.	./.	./.
chr5	111312457	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,4:34:90:0.044:2	./.	./.	./.	./.	./.	./.
chr5	111504479	rs7703522	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,49:32:94:0.521:2	0/1:41,38:32:79:0.481:2	0/1:0,14:32:14:1.00:2	0/1:0,127:32:127:1.00:2	0/1:1,75:31:76:0.987:2	0/1:48,48:31:96:0.500:2	0/1:44,43:32:87:0.494:2	0/1:55,66:32:121:0.545:2	0/1:0,105:33:105:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,125:32:125:1.00:2
chr5	111504782	rs17266567	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,61:32:119:0.513:2	0/1:34,33:32:67:0.493:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	111506069	rs10040749	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,18:32:42:0.429:2	0/1:12,10:29:22:0.455:2	0/1:0,6:31:6:1.00:2	0/1:1,52:31:53:0.981:2	0/1:0,23:30:23:1.00:2	0/1:26,15:30:41:0.366:2	0/1:19,5:32:24:0.208:2	0/1:37,21:29:59:0.362:2	0/1:0,30:31:30:1.00:2	0/1:0,36:31:36:1.00:2	0/1:31,26:32:57:0.456:2
chr5	111506712	rs17266727	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,16:33:29:0.552:2	./.	./.	./.	./.	./.	./.	./.
chr5	111519740	rs1560058	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:108,78:32:186:0.419:2	0/1:108,86:32:194:0.443:2	0/1:2,33:32:35:0.943:2	0/1:0,178:33:178:1.00:2	0/1:0,190:32:190:1.00:2	0/1:110,80:33:190:0.421:2	0/1:110,79:32:189:0.418:2	0/1:98,97:32:195:0.497:2	0/1:0,183:34:183:1.00:2	0/1:0,183:32:183:1.00:2	0/1:0,181:33:181:1.00:2
chr5	111530284	rs7719346	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,23:33:38:0.605:2	0/1:12,6:32:18:0.333:2	./.	0/1:0,56:32:56:1.00:2	0/1:0,20:32:20:1.00:2	0/1:26,26:32:52:0.500:2	0/1:11,16:32:27:0.593:2	0/1:26,20:32:46:0.435:2	0/1:0,51:32:51:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,57:32:57:1.00:2
chr5	111531387	rs149373122	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,19:32:47:0.404:2	./.	./.	./.	./.	./.	./.
chr5	111545670	rs890757	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,48:32:95:0.505:2	0/1:23,37:31:60:0.617:2	0/1:0,17:31:17:1.00:2	0/1:1,96:32:97:0.990:2	0/1:0,53:30:53:1.00:2	0/1:60,39:31:99:0.394:2	0/1:60,42:32:102:0.412:2	0/1:41,46:31:87:0.529:2	0/1:1,126:33:127:0.992:2	0/1:0,107:32:107:1.00:2	0/1:0,120:32:120:1.00:2
chr5	111611076	rs12521830	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,45:30:45:1.00:2	0/1:49,42:30:91:0.462:2	0/1:2,42:31:44:0.955:2	./.	0/1:48,45:31:93:0.484:2	0/1:42,36:32:78:0.462:2	0/1:48,45:30:93:0.484:2
chr5	112162854	rs2229992	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,78:30:78:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,8:30:8:1.00:2	0/1:66,50:31:117:0.431:2	0/1:56,43:30:99:0.434:2	0/1:73,52:30:125:0.416:2	0/1:56,39:30:95:0.411:2	0/1:49,63:30:112:0.563:2	0/1:1,124:31:125:0.992:2	0/1:47,20:30:67:0.299:2	0/1:1,107:30:109:0.991:2
chr5	112164561	rs351771	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,88:32:90:0.978:2	0/1:0,52:32:52:1.00:2	0/1:0,9:33:9:1.00:2	0/1:66,41:32:107:0.383:2	0/1:56,33:32:89:0.371:2	0/1:0,66:31:66:1.00:2	0/1:40,35:31:75:0.467:2	0/1:75,47:32:122:0.385:2	0/1:2,90:33:92:0.978:2	0/1:61,26:32:87:0.299:2	0/1:0,139:31:139:1.00:2
chr5	112175770	rs41115	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,44:33:45:0.978:2	0/1:0,36:32:36:1.00:2	0/1:0,10:33:10:1.00:2	0/1:27,24:33:51:0.471:2	0/1:22,18:33:40:0.450:2	0/1:0,44:32:44:1.00:2	0/1:34,20:32:54:0.370:2	0/1:19,34:33:53:0.642:2	0/1:0,51:34:51:1.00:2	0/1:32,17:32:49:0.347:2	0/1:1,82:33:83:0.988:2
chr5	112176325	rs42427	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:31:60:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,10:32:10:1.00:2	0/1:32,38:31:70:0.543:2	0/1:37,29:30:66:0.439:2	0/1:0,62:31:62:1.00:2	0/1:38,36:31:74:0.486:2	0/1:34,38:32:72:0.528:2	0/1:0,61:31:61:1.00:2	0/1:22,32:32:54:0.593:2	0/1:1,71:33:72:0.986:2
chr5	112176559	rs866006	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:30:85:1.00:2	0/1:0,26:28:26:1.00:2	0/1:0,13:29:13:1.00:2	0/1:50,40:28:90:0.444:2	0/1:21,31:30:52:0.596:2	0/1:0,86:30:86:1.00:2	0/1:28,28:29:56:0.500:2	0/1:40,51:29:91:0.560:2	0/1:0,134:30:134:1.00:2	0/1:41,44:30:85:0.518:2	0/1:0,121:30:121:1.00:2
chr5	112176565	rs199600387	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,50:34:92:0.543:2	./.
chr5	112176756	rs459552	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,40:31:40:1.00:2	0/1:24,20:31:44:0.455:2	0/1:0,51:30:51:1.00:2	0/1:16,18:31:34:0.529:2	0/1:0,43:31:43:1.00:2	0/1:0,45:32:45:1.00:2	0/1:10,15:31:25:0.600:2	0/1:0,54:31:55:1.00:2
chr5	112177171	rs465899	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:32:38:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,2:31:2:1.00:2	0/1:24,15:32:39:0.385:2	0/1:19,19:32:38:0.500:2	0/1:0,42:32:42:1.00:2	0/1:16,18:32:34:0.529:2	0/1:12,18:33:30:0.600:2	0/1:0,43:33:43:1.00:2	0/1:23,13:32:36:0.361:2	0/1:0,57:33:57:1.00:2
chr5	112178383	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:34:43:0.093:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	112178795	rs2229995	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:30:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	112179359	rs140868933	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,14:29:36:0.389:2	./.	./.	./.	./.	./.	./.	./.
chr5	112197082	rs11555908	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,28:31:55:0.509:2	./.	./.	./.	./.	./.
chr5	112198206	rs201250324	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,12:13:103:0.118:2
chr5	112312676	rs33555	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:33:90:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,146:32:146:1.00:2	0/1:0,131:31:131:1.00:2	0/1:0,131:32:131:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,166:32:166:1.00:2	0/1:0,129:33:129:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,127:32:127:1.00:2
chr5	112328377	rs3733969	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,17:32:36:0.472:2	0/1:3,12:33:15:0.800:2	./.	./.	0/1:0,24:33:24:1.00:2	0/1:23,9:34:32:0.281:2	0/1:0,16:33:16:1.00:2	0/1:26,23:32:49:0.469:2	0/1:0,32:34:32:1.00:2	0/1:0,21:33:21:1.00:2	0/1:21,14:31:35:0.400:2
chr5	112343722	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:32:84:0.048:2	./.
chr5	112349070	rs9326869	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:31,29:30:60:0.483:2	0/1:16,23:30:39:0.590:2	0/1:0,4:30:4:1.00:2	./.	0/1:0,48:30:48:1.00:2	0/1:42,39:30:81:0.481:2	0/1:0,49:31:49:1.00:2	0/1:47,18:30:65:0.277:2	0/1:0,59:31:59:1.00:2	0/1:0,36:30:36:1.00:2	0/1:38,32:30:70:0.457:2
chr5	112379289	rs2227948	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:31,20:32:51:0.392:2	0/1:15,13:32:28:0.464:2	./.	./.	0/1:1,75:31:76:0.987:2	0/1:33,34:32:67:0.507:2	0/1:0,92:33:92:1.00:2	./.	0/1:26,20:33:46:0.435:2	0/1:0,41:33:41:1.00:2	0/1:20,24:33:44:0.545:2
chr5	112384802	rs6594664	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:29:90:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,141:30:142:1.00:2	0/1:0,151:29:151:1.00:2	0/1:0,151:29:151:1.00:2	0/1:0,163:30:163:1.00:2	0/1:0,142:30:142:1.00:2	0/1:0,126:30:126:1.00:2	0/1:0,99:29:100:1.00:2	0/1:0,90:30:90:1.00:2
chr5	112399791	rs2227947	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,38:32:88:0.432:2	0/1:31,21:31:52:0.404:2	0/1:7,5:30:12:0.417:2	0/1:57,58:31:116:0.504:2	0/1:58,35:31:93:0.376:2	0/1:58,55:31:113:0.487:2	0/1:1,89:31:90:0.989:2	./.	0/1:35,49:32:84:0.583:2	0/1:0,60:31:60:1.00:2	0/1:39,35:31:74:0.473:2
chr5	112406862	rs2227950	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:107,88:33:195:0.451:2	0/1:68,53:33:121:0.438:2	./.	0/1:119,73:33:192:0.380:2	0/1:105,89:33:194:0.459:2	0/1:102,90:32:192:0.469:2	./.	0/1:0,188:33:188:1.00:2	0/1:105,91:34:196:0.464:2	./.	0/1:88,99:33:187:0.529:2
chr5	112439941	rs6594681	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:32:60:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,79:33:79:1.00:2	0/1:0,139:32:139:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,144:32:144:1.00:2	0/1:0,123:32:123:1.00:2	0/1:2,99:33:101:0.980:2	0/1:0,56:32:56:1.00:2	0/1:0,73:31:73:1.00:2
chr5	112479004	rs2227949	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:30:63:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,20:30:20:1.00:2	0/1:1,105:30:106:0.991:2	0/1:0,129:29:129:1.00:2	0/1:0,119:29:119:1.00:2	./.	0/1:0,119:29:119:1.00:2	0/1:0,105:30:105:1.00:2	0/1:0,78:29:78:1.00:2	0/1:0,78:29:78:1.00:2
chr5	112769541	rs41459745	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:31:12:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	112769675	rs34696815	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,21:31:46:0.457:2	./.	./.	./.	./.	./.	./.
chr5	112769997	rs34936289	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:32:9:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	112770015	rs35724644	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:31:9:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	112770027	rs26980	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,23:32:54:0.426:2	./.	0/1:34,31:33:65:0.477:2	./.	./.	./.	./.	./.
chr5	112823998	rs348943	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,38:30:38:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,7:31:7:1.00:2	./.	0/1:18,34:29:52:0.654:2	0/1:44,41:28:85:0.482:2	./.	0/1:0,67:30:67:1.00:2	./.	0/1:0,57:30:57:1.00:2	0/1:32,29:29:61:0.475:2
chr5	112824039	rs348942	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:28:8:1.00:2	./.	./.	./.	0/1:0,10:25:10:1.00:2	0/1:0,12:26:12:1.00:2	./.	0/1:0,9:26:9:1.00:2	./.	0/1:0,5:28:5:1.00:2	0/1:5,8:26:13:0.615:2
chr5	112824045	rs141484479	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:30:6:0.500:2	./.	./.	./.	./.	./.
chr5	112824054	rs199741976	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.
chr5	112850963	rs1035409	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,7:32:24:0.292:2	./.	./.	./.	./.	./.	./.	./.
chr5	112878096	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:33:170:0.024:2	./.
chr5	112884728	rs4639215	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,18:31:18:1.00:2	./.	./.	0/1:13,6:29:19:0.316:2	./.	0/1:1,19:32:20:0.950:2	./.	0/1:22,19:30:41:0.463:2
chr5	112889370	rs75714066	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,28:33:75:0.373:2	0/1:47,34:33:81:0.420:2	0/1:40,48:34:88:0.545:2	./.	./.	./.	./.
chr5	112889374	rs10071816	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:32:11:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	112899573	rs6867579	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,94:32:177:0.531:2	./.	./.	0/1:85,77:32:162:0.475:2	./.	0/1:108,87:32:195:0.446:2	./.	0/1:92,78:32:170:0.459:2
chr5	112899702	rs6886628	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,14:31:25:0.560:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	112929013	rs1132528	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:32:8:0.375:2	0/1:1,44:33:45:0.978:2	./.	./.	0/1:18,12:32:30:0.400:2	./.	0/1:0,41:34:41:1.00:2	./.	0/1:23,16:33:39:0.410:2
chr5	113698544	rs40179	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,3:33:11:0.273:2	0/1:3,4:31:7:0.571:2	./.	0/1:0,30:32:30:1.00:2	0/1:4,11:33:15:0.733:2	0/1:16,10:32:26:0.385:2	0/1:0,24:32:24:1.00:2	0/1:6,5:29:11:0.455:2	0/1:10,5:34:15:0.333:2	./.	./.
chr5	113699654	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,84:29:179:0.469:2	./.
chr5	113829121	rs1841251	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:33:49:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,56:33:56:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,51:33:51:1.00:2	0/1:0,61:34:61:1.00:2	0/1:0,64:33:64:1.00:2	0/1:0,45:34:45:1.00:2
chr5	114462355	rs2974617	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:32:95:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,91:31:91:1.00:2	0/1:1,68:31:69:0.986:2	0/1:0,101:31:101:1.00:2	0/1:0,92:31:92:1.00:2	0/1:0,137:32:137:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,145:32:145:1.00:2
chr5	114462405	rs368817218	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,4:32:49:0.082:2	./.	./.	./.	./.	./.	./.
chr5	114469724	rs17137481	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,89:32:174:0.511:2	./.
chr5	114480313	rs61745684	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:28:59:0.068:2	./.
chr5	114480364	rs7716270	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,40:32:85:0.471:2	./.
chr5	114515657	rs11955164	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,36:28:59:0.632:2
chr5	114548100	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,6:26:159:0.038:2	./.	./.	./.	./.	./.
chr5	114548273	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:34:114:0.035:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	114573647	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,5:32:149:0.034:2	./.
chr5	114860161	rs73253005	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,52:31:136:0.382:2	./.	0/1:89,45:31:134:0.336:2	./.	./.	0/1:66,60:32:126:0.476:2	0/1:68,45:32:113:0.398:2	./.
chr5	114916351	rs7705473	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,63:33:115:0.548:2	./.	./.
chr5	114916763	rs113049216	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,54:32:117:0.462:2	./.	./.
chr5	115141096	rs4921029	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,9:30:34:0.265:2	./.	./.	./.	0/1:25,18:33:43:0.419:2	./.	./.
chr5	115173390	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:33:197:0.025:2	./.	./.	./.
chr5	115173422	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,5:32:128:0.039:2	./.	./.	./.
chr5	115173433	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:30:96:0.042:2	./.	./.	./.
chr5	115177207	rs74844425	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,24:31:52:0.462:2	./.	./.	./.	./.
chr5	115177262	rs7724740	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,4:35:92:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr5	115177721	rs1050864	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:30:12:0.500:2	0/1:4,6:31:10:0.600:2	./.	./.	./.	0/1:23,7:29:30:0.233:2	./.	./.	./.	./.	./.
chr5	115249078	rs7733604	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,20:32:83:0.241:2	0/1:25,10:33:35:0.286:2	0/1:6,5:32:11:0.455:2	0/1:61,14:32:75:0.187:2	0/1:42,11:30:53:0.208:2	0/1:61,18:31:79:0.228:2	0/1:37,12:32:49:0.245:2	0/1:54,29:31:84:0.349:2	0/1:74,15:33:89:0.169:2	0/1:56,20:31:76:0.263:2	0/1:57,35:32:92:0.380:2
chr5	115298378	rs10062297	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,4:28:8:0.500:2	0/1:1,2:31:3:0.667:2	0/1:0,3:31:3:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,4:26:4:1.00:2	0/1:0,14:30:14:1.00:2	./.	0/1:0,16:30:16:1.00:2	0/1:0,3:31:3:1.00:2	0/1:3,3:29:6:0.500:2	./.
chr5	115298475	rs12520255	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,15:28:29:0.517:2	0/1:17,6:30:23:0.261:2	0/1:0,6:29:6:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,26:29:26:1.00:2	0/1:0,33:30:33:1.00:2	./.	0/1:0,45:29:45:1.00:2	0/1:0,37:31:37:1.00:2	0/1:20,10:29:30:0.333:2	./.
chr5	115298518	rs12522632	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,19:28:37:0.514:2	0/1:24,6:29:30:0.200:2	0/1:0,10:29:10:1.00:2	0/1:0,33:28:33:1.00:2	0/1:0,37:28:37:1.00:2	0/1:0,44:28:44:1.00:2	./.	0/1:0,60:28:60:1.00:2	0/1:0,51:29:51:1.00:2	0/1:22,14:26:36:0.389:2	./.
chr5	115298977	rs1445708	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,21:31:51:0.412:2	0/1:24,23:29:47:0.489:2	0/1:23,42:30:65:0.646:2	./.	0/1:0,62:30:62:1.00:2	0/1:0,51:32:51:1.00:2	0/1:11,11:29:22:0.500:2	./.
chr5	115320370	rs17482536	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,14:31:25:0.560:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	115335543	rs148975146	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,50:31:86:0.581:2	./.	./.	./.	./.	./.
chr5	115336862	rs7712021	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,65:30:137:0.474:2	0/1:29,41:29:70:0.586:2	./.	./.	./.	0/1:81,72:29:153:0.471:2	./.	./.	./.	./.	./.
chr5	115341611	rs10078748	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,29:33:55:0.527:2	0/1:20,31:32:51:0.608:2	0/1:0,6:31:6:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,72:31:72:1.00:2	0/1:30,26:32:56:0.464:2	0/1:0,42:31:42:1.00:2	0/1:45,36:33:81:0.444:2	0/1:38,28:32:66:0.424:2	0/1:0,57:32:57:1.00:2
chr5	115341638	rs10078759	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,36:33:64:0.563:2	0/1:22,32:33:54:0.593:2	0/1:0,5:31:5:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,82:32:82:1.00:2	0/1:32,26:33:58:0.448:2	0/1:0,57:33:57:1.00:2	0/1:41,39:34:80:0.488:2	0/1:37,30:33:67:0.448:2	0/1:0,62:33:62:1.00:2
chr5	115428334	rs1129494	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,27:34:54:0.500:2	0/1:7,11:33:18:0.611:2	./.	0/1:28,16:32:44:0.364:2	0/1:26,14:32:40:0.350:2	0/1:24,16:31:40:0.400:2	0/1:2,38:32:40:0.950:2	0/1:54,23:33:77:0.299:2	0/1:31,35:33:66:0.530:2	0/1:0,36:32:36:1.00:2	0/1:0,56:32:56:1.00:2
chr5	115428381	rs1129495	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,17:32:26:0.654:2	./.	./.	./.	./.	./.	./.	./.
chr5	115469773	rs1129496	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,31:33:54:0.574:2	0/1:23,15:33:38:0.395:2	0/1:0,3:32:3:1.00:2	0/1:29,32:33:61:0.525:2	0/1:30,30:32:60:0.500:2	0/1:46,30:32:76:0.395:2	0/1:0,40:33:40:1.00:2	0/1:51,36:32:87:0.414:2	0/1:47,47:33:94:0.500:2	0/1:1,46:33:47:0.979:2	0/1:0,68:33:68:1.00:2
chr5	115628117	rs6866938	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:27,12:32:39:0.308:2	0/1:15,6:32:21:0.286:2	./.	0/1:18,12:31:30:0.400:2	./.	./.	./.	./.	./.	./.	./.
chr5	115628118	rs201143942	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,17:32:33:0.515:2	./.
chr5	115628134	rs201733651	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:15,5:18:20:0.250:2	./.	./.	0/1:17,6:25:23:0.261:2	./.	./.	./.	./.	./.	./.	./.
chr5	115628136	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,6:17:34:0.176:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	115782493	rs200578077	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,22:28:51:0.431:2	./.	./.	./.	./.	./.	./.	./.
chr5	115783019	rs114860630	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,19:30:34:0.559:2	./.	./.	./.	./.
chr5	115811220	rs423834	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:27:3:1.00:2	0/1:0,40:30:40:1.00:2	0/1:14,18:30:32:0.563:2	./.	0/1:0,32:29:32:1.00:2	0/1:15,14:29:29:0.483:2	0/1:0,44:30:44:1.00:2	0/1:13,20:30:33:0.606:2	./.
chr5	115811273	rs17432496	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:33:10:0.400:2	./.	./.	./.	./.	0/1:26,13:32:39:0.333:2	./.	./.	./.
chr5	115813726	rs34966	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:33:95:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,145:32:145:1.00:2	0/1:0,112:33:113:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,107:32:107:1.00:2
chr5	118183843	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:32:168:0.024:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	118310290	rs200658031	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:34:192:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,7:32:197:0.036:2	0/1:192,5:33:197:0.025:2
chr5	118468907	rs142000355	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,80:29:138:0.580:2	./.	./.
chr5	118480316	rs4895362	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,39:32:77:0.506:2	./.	./.
chr5	118484804	rs7734532	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,119:32:119:1.00:2	0/1:0,54:32:54:1.00:2	./.	./.	./.	0/1:2,111:31:113:0.982:2	0/1:61,58:31:119:0.487:2	0/1:0,153:32:153:1.00:2	./.	0/1:43,51:32:94:0.543:2	0/1:108,77:31:185:0.416:2
chr5	118500264	rs116379331	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,77:30:163:0.472:2	0/1:61,45:29:106:0.425:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	118506345	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:31:127:0.031:2	./.	./.	./.	./.	./.
chr5	118506807	rs76475084	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,16:28:31:0.516:2	0/1:20,10:30:30:0.333:2	./.	./.	./.	0/1:18,21:30:39:0.538:2	0/1:11,13:31:24:0.542:2	./.	./.	./.	./.
chr5	118510947	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:32:41:0.098:2	./.	./.	./.	./.	./.
chr5	118525531	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,16:14:119:0.134:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	118552667	rs76342985	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,27:31:59:0.458:2	0/1:18,17:32:35:0.486:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	118691784	rs3797341	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,17:30:33:0.515:2	0/1:2,28:32:30:0.933:2	0/1:27,20:32:47:0.426:2	./.	0/1:32,22:33:54:0.407:2	./.	./.
chr5	118691832	rs3797342	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,35:31:36:0.972:2	0/1:19,15:32:34:0.441:2	./.	0/1:33,18:32:51:0.353:2	./.	./.
chr5	118728953	rs3203922	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,109:32:110:0.991:2	0/1:2,78:33:80:0.975:2	0/1:54,34:32:88:0.386:2	0/1:77,52:33:129:0.403:2	./.	./.
chr5	118811533	rs25640	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:32:6:0.667:2	0/1:13,22:32:35:0.629:2	0/1:1,30:32:31:0.968:2	./.	0/1:18,6:33:25:0.250:2	0/1:20,21:32:41:0.512:2	0/1:1,34:32:35:0.971:2	./.	0/1:27,24:33:51:0.471:2
chr5	118850679	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:197:0.020:2
chr5	118850709	rs28943591	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,64:31:177:0.362:2	./.	./.	./.
chr5	118861713	rs11205	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,5:32:14:0.357:2	0/1:52,47:32:99:0.475:2	0/1:1,94:31:95:0.989:2	./.	./.	./.	0/1:45,48:33:93:0.516:2	./.	0/1:57,49:33:106:0.462:2
chr5	118867004	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:33:49:0.082:2	./.	./.	./.	./.	./.
chr5	118969960	rs328694	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:53,48:31:102:0.475:2	0/1:45,32:32:77:0.416:2	./.	0/1:63,58:32:121:0.479:2	./.	0/1:1,107:32:108:0.991:2	0/1:5,95:32:100:0.950:2	0/1:76,66:31:142:0.465:2	./.	0/1:1,79:32:80:0.988:2	0/1:61,57:32:118:0.483:2
chr5	118970770	rs2434600	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,21:32:46:0.457:2	0/1:13,16:32:29:0.552:2	0/1:4,4:33:8:0.500:2	0/1:42,20:32:62:0.323:2	./.	0/1:36,20:30:56:0.357:2	0/1:5,55:31:60:0.917:2	0/1:33,34:32:67:0.507:2	./.	0/1:0,50:31:50:1.00:2	0/1:32,36:32:68:0.529:2
chr5	120021817	rs17853861	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,19:31:29:0.655:2	./.	./.	./.	./.
chr5	120021819	rs1158194	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:32:28:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,28:32:28:1.00:2
chr5	121355961	rs55708726	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:24,28:33:52:0.538:2	0/1:12,15:32:27:0.556:2	./.	./.	0/1:27,21:31:48:0.438:2	./.	0/1:21,12:29:33:0.364:2	./.	0/1:0,67:33:67:1.00:2	./.	0/1:37,23:32:60:0.383:2
chr5	121356350	rs183268564	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,32:32:70:0.457:2	./.	./.	./.
chr5	121356402	rs187982991	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,14:29:45:0.311:2	./.	./.	./.
chr5	121411137	rs370861938	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:33:153:0.026:2	./.	./.
chr5	121413208	rs1800449	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:22,23:31:45:0.511:2	0/1:13,15:32:28:0.536:2	./.	./.	0/1:23,23:30:46:0.500:2	./.	0/1:28,16:32:44:0.364:2	./.	0/1:0,50:32:50:1.00:2	./.	0/1:31,29:32:60:0.483:2
chr5	121488203	rs2560306	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	121488461	rs199779243	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,7:15:38:0.184:2	./.	./.	0/1:18,6:19:24:0.250:2	./.
chr5	121488506	rs35262183	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:16,17:33:33:0.515:2	0/1:8,11:33:19:0.579:2	./.	./.	0/1:16,22:32:38:0.579:2	./.	0/1:17,25:33:42:0.595:2	./.	0/1:11,21:33:32:0.656:2	./.	./.
chr5	121489077	rs35279529	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,39:33:87:0.448:2	0/1:20,29:32:49:0.592:2	./.	./.	0/1:45,28:32:73:0.384:2	./.	./.	./.
chr5	121489122	rs12658464	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:57,37:33:94:0.394:2	0/1:45,20:32:65:0.308:2	./.	./.	0/1:39,28:32:67:0.418:2	./.	0/1:34,34:32:68:0.500:2	./.	0/1:64,41:33:105:0.390:2	./.	./.
chr5	121780389	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:34:118:0.034:2	./.	./.
chr5	121786403	rs28937592	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,8:32:22:0.364:2	./.	./.
chr5	121786667	rs55712196	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,20:32:58:0.345:2	./.	./.	./.	./.
chr5	122165317	rs13662	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,4:33:18:0.222:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	122226784	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:30:128:0.031:2	./.	./.
chr5	122359640	rs451195	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,136:33:138:0.986:2	0/1:0,75:33:75:1.00:2	./.	./.	./.	0/1:90,90:33:180:0.500:2	0/1:116,75:33:191:0.393:2	./.	0/1:96,81:34:177:0.458:2	./.	0/1:0,186:33:186:1.00:2
chr5	122364538	rs34341374	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,57:33:157:0.363:2	./.	./.
chr5	122425832	rs13182369	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,6:31:7:0.857:2	./.	./.	0/1:0,10:31:10:1.00:2	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.
chr5	122435620	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:32:69:0.058:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	122435627	rs1008058	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,70:30:151:0.464:2	./.	./.	./.	./.	0/1:66,58:29:124:0.468:2	./.
chr5	122509197	rs7719757	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:33,27:32:60:0.450:2	0/1:12,21:32:33:0.636:2	0/1:6,6:32:12:0.500:2	./.	0/1:33,21:32:54:0.389:2	./.	./.	./.	0/1:46,48:33:94:0.511:2	0/1:46,23:32:69:0.333:2	0/1:34,33:32:67:0.493:2
chr5	122682348	rs1047438	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,24:30:62:0.387:2	0/1:20,24:30:44:0.545:2	0/1:0,8:27:8:1.00:2	0/1:1,79:29:80:0.988:2	0/1:0,54:28:54:1.00:2	./.	0/1:35,21:29:57:0.375:2	0/1:71,52:29:123:0.423:2	0/1:44,43:30:87:0.494:2	0/1:37,23:30:60:0.383:2	0/1:52,43:30:95:0.453:2
chr5	122685727	rs1047437	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:88,98:32:186:0.527:2	0/1:78,91:32:169:0.538:2	./.	./.	./.	./.	0/1:172,4:33:176:0.023:2	0/1:73,97:33:171:0.571:2	./.	./.	./.
chr5	122718736	rs6595440	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,44:33:97:0.454:2	0/1:31,22:32:53:0.415:2	0/1:7,11:32:18:0.611:2	0/1:2,100:32:102:0.980:2	0/1:0,61:32:61:1.00:2	./.	0/1:29,26:32:55:0.473:2	0/1:61,70:32:131:0.534:2	0/1:54,47:33:101:0.465:2	./.	./.
chr5	122727026	rs6876883	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,17:31:43:0.395:2	0/1:25,15:32:40:0.375:2	./.	0/1:2,40:31:42:0.952:2	0/1:0,20:30:20:1.00:2	./.	0/1:25,23:32:48:0.479:2	0/1:24,23:31:47:0.489:2	0/1:33,23:32:56:0.411:2	./.	./.
chr5	122729025	rs189429890	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,42:32:94:0.447:2	./.	./.	./.	./.	./.	./.	./.
chr5	123976967	rs7703447	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,69:33:129:0.535:2	./.	./.	0/1:32,28:32:60:0.467:2	./.
chr5	123983915	rs6862252	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,17:31:18:0.944:2	0/1:0,19:31:19:1.00:2	./.	0/1:14,10:32:24:0.417:2	./.	0/1:0,12:30:12:1.00:2	0/1:10,15:31:25:0.600:2	0/1:1,23:31:24:0.958:2	./.	0/1:13,12:31:25:0.480:2	0/1:0,33:32:33:1.00:2
chr5	123984763	rs7708070	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:31:54:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,45:30:45:1.00:2	0/1:21,14:31:35:0.400:2	0/1:0,55:30:55:1.00:2	0/1:16,21:30:37:0.568:2	0/1:3,48:31:51:0.941:2	0/1:25,23:32:48:0.479:2	0/1:0,58:32:58:1.00:2	0/1:0,69:30:69:1.00:2
chr5	124080319	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,5:28:138:0.036:2	./.	./.
chr5	125696140	rs11241887	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:33:64:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,108:32:108:1.00:2	0/1:50,44:32:95:0.468:2	0/1:0,70:32:70:1.00:2	0/1:0,80:32:81:1.00:2	0/1:0,85:32:85:1.00:2	0/1:69,34:33:103:0.330:2	0/1:0,91:33:91:1.00:2	0/1:0,94:33:94:1.00:2
chr5	125802027	rs62394179	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	./.	./.	0/1:33,36:31:69:0.522:2	./.	./.	0/1:57,38:32:95:0.400:2
chr5	125816175	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:33:168:0.024:2
chr5	125887715	rs12514417	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:13,8:33:21:0.381:2	0/1:7,10:31:17:0.588:2	./.	./.	0/1:0,20:33:20:1.00:2	./.	./.	./.	./.	0/1:7,8:34:15:0.533:2	./.
chr5	125915744	rs34275373	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,45:30:46:0.978:2	./.	./.	./.	./.	./.	./.
chr5	125915779	rs56397023	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,47:30:48:0.979:2	./.	./.	./.	./.	./.	./.
chr5	125919653	rs370624118	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:31:148:0.027:2	./.	./.	./.	./.	./.
chr5	125919664	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:143,6:30:149:0.040:2	./.	0/1:142,4:31:146:0.027:2	./.	./.	./.	./.	./.
chr5	125939275	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:32:183:0.022:2
chr5	126140522	rs3749830	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,39:29:88:0.443:2	./.	./.	./.	./.	./.	./.	./.
chr5	126161717	rs192973081	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,44:31:90:0.489:2	./.	./.	./.
chr5	126171974	rs2230151	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,40:32:89:0.449:2	./.	./.	./.	./.	./.	./.	./.
chr5	126732399	rs3812055	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,60:31:100:0.600:2	./.	./.	./.
chr5	126732420	rs113794264	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,40:31:117:0.342:2	./.	./.	./.
chr5	126732427	rs3812054	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,75:32:120:0.625:2	./.	./.	./.
chr5	126746140	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:32:139:0.029:2	./.
chr5	126746277	rs31483	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:30:25:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,25:32:25:1.00:2	0/1:7,15:31:22:0.682:2	0/1:5,10:31:15:0.667:2	0/1:0,26:32:26:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,35:32:35:1.00:2
chr5	126769146	rs11950427	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,64:28:129:0.496:2	./.	./.	./.
chr5	126771158	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:30:78:0.051:2
chr5	126791282	rs17164935	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,22:32:45:0.489:2	./.	./.	./.
chr5	126792974	rs3812052	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:32:27:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,6:33:6:1.00:2	0/1:11,28:32:39:0.718:2	0/1:16,21:32:37:0.568:2	0/1:26,22:32:48:0.458:2	0/1:0,57:32:57:1.00:2	0/1:27,18:32:45:0.400:2	0/1:0,29:33:29:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,35:32:35:1.00:2
chr5	126860389	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:197:0.020:2	./.	./.
chr5	126865997	rs34252679	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,19:31:38:0.500:2	0/1:8,5:32:13:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	126869436	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:31:84:0.048:2	./.	./.	./.	./.
chr5	126887569	rs7522	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,26:33:54:0.481:2	0/1:20,34:32:54:0.630:2	./.	0/1:44,33:33:77:0.429:2	0/1:1,110:32:111:0.991:2	0/1:48,67:31:115:0.583:2	./.	0/1:65,37:33:102:0.363:2	./.	./.	./.
chr5	126993249	rs45074	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,46:32:49:0.939:2	0/1:25,22:31:48:0.468:2	0/1:1,64:32:65:0.985:2	0/1:3,45:32:48:0.938:2	0/1:0,68:32:68:1.00:2	0/1:32,30:32:62:0.484:2	0/1:17,38:32:55:0.691:2	0/1:0,56:32:56:1.00:2
chr5	126993263	rs248709	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,57:30:60:0.950:2	0/1:27,26:30:53:0.491:2	0/1:1,84:30:85:0.988:2	0/1:3,59:30:62:0.952:2	0/1:0,92:30:92:1.00:2	0/1:48,42:30:90:0.467:2	0/1:28,47:31:75:0.627:2	0/1:2,79:30:81:0.975:2
chr5	126993282	rs2280170	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,38:31:83:0.458:2	./.	0/1:70,40:30:110:0.364:2	./.	./.	./.	./.	./.
chr5	126993838	rs248708	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,36:33:84:0.429:2	0/1:33,26:33:59:0.441:2	0/1:30,34:32:64:0.531:2	0/1:27,23:33:50:0.460:2	0/1:29,30:32:59:0.508:2	./.	0/1:35,25:32:60:0.417:2	0/1:39,35:32:74:0.473:2
chr5	126993922	rs248707	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,31:31:71:0.437:2	0/1:29,16:30:45:0.356:2	0/1:33,36:30:69:0.522:2	0/1:18,20:30:38:0.526:2	0/1:38,33:29:71:0.465:2	./.	0/1:26,18:29:44:0.409:2	0/1:45,41:30:86:0.477:2
chr5	126993958	rs248706	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,80:32:83:0.976:2	0/1:33,18:31:51:0.353:2	0/1:0,68:32:68:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,70:32:70:1.00:2	0/1:31,42:32:73:0.575:2	0/1:30,26:33:56:0.464:2	0/1:0,109:32:109:1.00:2
chr5	126994262	rs190738458	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,8:31:24:0.333:2	./.	./.	./.	./.
chr5	126994315	rs116673667	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,12:32:27:0.444:2	./.	./.
chr5	127469859	rs2228112	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,40:33:103:0.388:2	./.	./.	./.	./.	./.	./.	./.
chr5	127516650	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:32:117:0.034:2	./.
chr5	127520537	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,58:33:100:0.580:2	./.	./.	./.	./.	./.	./.	./.
chr5	127597518	rs10070365	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:32:18:0.500:2	./.	./.	./.	./.	0/1:82,70:32:152:0.461:2	./.	0/1:65,53:32:118:0.449:2	./.
chr5	127609633	rs2291628	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,47:33:90:0.522:2	./.	./.
chr5	127614472	rs190450	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,28:33:52:0.538:2	0/1:14,7:32:21:0.333:2	0/1:1,2:34:3:0.667:2	0/1:2,26:33:28:0.929:2	0/1:0,52:33:52:1.00:2	0/1:23,43:32:66:0.652:2	0/1:37,16:32:53:0.302:2	0/1:2,65:32:67:0.970:2	0/1:28,28:34:56:0.500:2	0/1:0,32:32:32:1.00:2	0/1:26,21:32:47:0.447:2
chr5	127622491	rs32209	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,12:31:18:0.667:2	0/1:0,110:32:110:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr5	127625559	rs56131649	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,133:31:133:1.00:2	./.	./.	./.	./.	./.	./.
chr5	127638759	rs11955288	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,11:32:23:0.478:2	./.	./.
chr5	127681251	rs28763946	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,64:31:147:0.435:2	./.	./.
chr5	127685135	rs154001	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,44:33:83:0.530:2	0/1:20,25:32:45:0.556:2	./.	0/1:0,98:32:98:1.00:2	0/1:0,65:32:65:1.00:2	0/1:61,40:32:101:0.396:2	0/1:50,55:32:105:0.524:2	0/1:64,43:32:107:0.402:2	0/1:60,65:32:125:0.520:2	0/1:39,53:32:92:0.576:2	0/1:37,36:32:73:0.493:2
chr5	127685624	rs255690	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,18:32:53:0.340:2	0/1:28,22:31:50:0.440:2	./.	./.	./.	0/1:28,24:31:52:0.462:2	./.	./.	0/1:46,39:31:85:0.459:2	0/1:18,35:31:53:0.660:2	0/1:51,25:32:76:0.329:2
chr5	127710375	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:32:109:0.037:2	./.	./.	./.
chr5	127782297	rs146849637	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,27:31:44:0.614:2
chr5	127863663	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:34:97:0.041:2	./.	./.
chr5	127873094	rs62390671	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,18:27:30:0.621:2	0/1:11,10:31:21:0.476:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	127873114	rs73348287	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,15:29:22:0.682:2	./.	0/1:14,9:29:23:0.391:2	./.	0/1:5,16:29:21:0.762:2	./.
chr5	127873178	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	127873186	rs55715053	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:32:6:0.600:2	./.	0/1:1,3:28:4:0.750:2	./.
chr5	128301885	rs2526247	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,96:30:97:0.990:2	0/1:0,70:29:70:1.00:2	0/1:8,5:30:13:0.385:2	./.	0/1:97,38:28:135:0.281:2	0/1:95,51:28:146:0.349:2	0/1:5,86:29:91:0.945:2	0/1:4,94:29:98:0.959:2	0/1:87,44:30:131:0.336:2	0/1:55,45:29:101:0.450:2	./.
chr5	128301971	rs2577541	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,102:29:104:0.981:2	0/1:3,78:29:81:0.963:2	0/1:7,4:32:11:0.364:2	./.	0/1:55,57:29:112:0.509:2	0/1:74,56:29:130:0.431:2	0/1:2,72:30:74:0.973:2	0/1:3,131:29:134:0.978:2	0/1:91,61:30:152:0.401:2	0/1:51,60:29:112:0.541:2	./.
chr5	128320957	rs371513145	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:33:129:0.031:2	./.
chr5	128430757	rs1127827	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,14:31:14:1.00:2	./.	./.	./.	0/1:16,6:33:22:0.273:2	0/1:13,8:33:21:0.381:2	0/1:10,7:34:17:0.412:2	0/1:0,5:31:5:1.00:2
chr5	128844838	rs28630040	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,40:29:61:0.656:2	./.	./.	./.	0/1:16,18:29:34:0.529:2	./.
chr5	128863471	rs6595908	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:32:87:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,116:32:116:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,85:32:86:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,125:33:125:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,141:32:141:1.00:2
chr5	128863518	rs61749629	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,26:33:99:0.263:2	./.	./.	0/1:42,34:33:76:0.447:2	0/1:53,35:33:88:0.398:2	./.	./.	./.
chr5	128990042	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	129037236	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:34:53:0.075:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	129040022	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:154,6:30:160:0.038:2	./.	./.	./.	./.	./.	./.
chr5	129040056	rs11749126	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:79,55:32:134:0.410:2	0/1:52,31:32:83:0.373:2	./.	./.	0/1:97,36:31:133:0.271:2	./.	./.	./.	./.	0/1:52,62:32:114:0.544:2	./.
chr5	129519952	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:31:43:0.093:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	129520679	rs10068403	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,31:33:64:0.484:2	./.	./.	./.	./.	./.	./.	./.
chr5	129521126	rs2015018	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,71:33:72:0.986:2	0/1:0,38:31:38:1.00:2	0/1:0,8:32:8:1.00:2	0/1:37,37:33:74:0.500:2	0/1:0,53:31:53:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,76:32:76:1.00:2	0/1:1,84:32:85:0.988:2	0/1:0,104:33:104:1.00:2	0/1:1,56:33:57:0.982:2	0/1:63,55:32:118:0.466:2
chr5	130500842	rs4696	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,13:29:26:0.500:2	./.	./.	./.
chr5	130515811	rs113642581	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,14:31:30:0.467:2	./.	./.	./.	./.	0/1:24,11:32:35:0.314:2	0/1:31,14:31:45:0.311:2
chr5	130766662	rs1291602	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,50:30:107:0.467:2	0/1:26,28:29:54:0.519:2	0/1:0,11:29:11:1.00:2	0/1:0,96:30:96:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,110:30:110:1.00:2	0/1:0,59:30:59:1.00:2	0/1:55,63:29:118:0.534:2	0/1:0,115:30:115:1.00:2	0/1:0,69:30:69:1.00:2	0/1:1,112:29:113:0.991:2
chr5	130797489	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,4:32:97:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr5	130808293	rs9327613	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,65:33:113:0.575:2	./.	./.	./.
chr5	130840385	rs10063129	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,79:30:124:0.637:2	./.	./.	./.
chr5	131008194	rs26008	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:29:45:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,5:30:5:1.00:2	0/1:26,27:30:53:0.509:2	0/1:21,16:28:37:0.432:2	0/1:16,8:28:24:0.333:2	0/1:0,34:28:34:1.00:2	0/1:0,26:29:26:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,28:28:28:1.00:2	0/1:21,19:28:40:0.475:2
chr5	131044928	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,4:30:81:0.049:2	./.	./.	./.	./.	./.	./.
chr5	131066725	rs7730228	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:33:61:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,37:33:37:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,44:33:44:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,64:33:64:1.00:2
chr5	131283289	rs148341426	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,28:32:75:0.373:2	./.	./.	./.
chr5	131283376	rs683749	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:29:7:1.00:2	0/1:43,37:31:81:0.463:2	0/1:29,18:31:47:0.383:2	0/1:29,28:29:57:0.491:2	./.	./.	./.	0/1:28,21:31:49:0.429:2	0/1:31,43:32:74:0.581:2
chr5	131298273	rs148539410	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,26:32:69:0.382:2	0/1:18,20:32:38:0.526:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	131303708	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:121,4:33:125:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr5	131312327	rs370652	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,26:31:67:0.388:2	0/1:32,19:31:51:0.373:2	0/1:0,7:31:7:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,56:31:56:1.00:2	0/1:52,19:30:71:0.268:2	0/1:0,77:32:77:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,76:31:76:1.00:2
chr5	131321159	rs11740791	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:13,12:29:25:0.480:2	0/1:6,3:25:9:0.333:2	./.	./.	0/1:31,39:29:70:0.557:2	./.	./.	./.	0/1:14,18:28:32:0.563:2	0/1:11,16:27:27:0.593:2	./.
chr5	131322494	rs77938	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,72:31:72:1.00:2	0/1:0,62:32:62:1.00:2	./.	0/1:37,27:30:64:0.422:2	0/1:1,48:31:49:0.980:2	0/1:0,64:31:64:1.00:2	0/1:1,79:32:80:0.988:2	0/1:46,39:31:85:0.459:2	0/1:0,90:32:90:1.00:2	0/1:26,24:31:51:0.480:2	0/1:0,99:32:99:1.00:2
chr5	131396478	rs40401	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,11:30:12:0.917:2	0/1:59,46:31:106:0.438:2	0/1:50,60:31:110:0.545:2	0/1:82,46:30:128:0.359:2	./.	0/1:168,4:32:172:0.023:2	./.	0/1:44,43:31:87:0.494:2	0/1:59,56:31:115:0.487:2
chr5	131411460	rs25882	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,5:32:14:0.357:2	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.
chr5	131546008	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:33:127:0.031:2	./.	./.	./.	./.	./.
chr5	131602166	rs1007602	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,107:33:107:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,21:33:21:1.00:2	0/1:105,80:32:186:0.432:2	0/1:112,76:33:190:0.404:2	0/1:2,161:33:163:0.988:2	./.	0/1:96,97:33:193:0.503:2	0/1:97,80:34:178:0.452:2	0/1:2,155:32:157:0.987:2	0/1:90,68:33:158:0.430:2
chr5	131607080	rs270619	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:29:7:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	131607588	rs4877	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	131607721	rs10479001	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,52:27:129:0.403:2	./.	./.	./.
chr5	131630648	rs11568502	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:32:81:0.049:2	./.	0/1:50,4:30:54:0.074:2	./.
chr5	131630669	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:32:57:0.070:2	./.
chr5	131657878	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,6:32:174:0.034:2	./.	./.	./.
chr5	131657908	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,6:31:197:0.030:2	./.	./.	./.
chr5	131657920	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,6:30:195:0.031:2	./.	./.	./.
chr5	131663046	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:33:98:0.041:2	./.	./.
chr5	131663062	rs272893	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:29,22:33:51:0.431:2	0/1:20,16:33:36:0.444:2	./.	0/1:0,65:33:65:1.00:2	./.	0/1:0,51:32:51:1.00:2	./.	0/1:50,22:31:72:0.306:2	0/1:0,95:33:95:1.00:2	0/1:31,32:32:63:0.508:2	0/1:52,47:33:100:0.475:2
chr5	131670546	rs272879	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:70,69:31:139:0.496:2	0/1:48,51:31:99:0.515:2	./.	0/1:0,162:30:162:1.00:2	./.	0/1:1,180:30:181:0.994:2	./.	0/1:82,85:30:167:0.509:2	0/1:0,178:31:178:1.00:2	0/1:80,80:30:160:0.500:2	0/1:94,83:30:177:0.469:2
chr5	131671662	rs12777	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,66:32:135:0.489:2	./.	./.	./.
chr5	131676320	rs1050152	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:46,37:32:83:0.446:2	0/1:26,30:32:56:0.536:2	./.	0/1:55,30:32:85:0.353:2	./.	0/1:51,28:31:79:0.354:2	./.	./.	0/1:54,81:33:135:0.600:2	0/1:39,42:33:81:0.519:2	0/1:57,42:32:99:0.424:2
chr5	131705769	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:34:163:0.025:2	./.	./.	./.
chr5	131705926	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,8:17:39:0.205:2	./.	./.	./.	./.	./.	./.	./.
chr5	131705949	rs2631365	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:32,27:31:59:0.458:2	0/1:19,16:31:35:0.457:2	0/1:0,11:32:11:1.00:2	./.	0/1:0,48:31:48:1.00:2	./.	0/1:0,27:32:27:1.00:2	0/1:53,23:30:76:0.303:2	./.	0/1:9,16:31:25:0.640:2	0/1:21,20:30:41:0.488:2
chr5	131721174	rs274558	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:69,79:31:148:0.534:2	0/1:42,51:32:93:0.548:2	0/1:0,24:30:24:1.00:2	./.	0/1:0,166:31:167:1.00:2	./.	0/1:0,154:32:155:1.00:2	0/1:74,80:31:154:0.519:2	./.	0/1:91,67:31:158:0.424:2	0/1:65,72:31:138:0.526:2
chr5	131755651	rs1003533	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:15,18:33:33:0.545:2	0/1:13,4:32:17:0.235:2	./.	./.	0/1:19,13:33:32:0.406:2	./.	0/1:2,19:33:21:0.905:2	0/1:23,26:32:49:0.531:2	./.	./.	0/1:39,32:33:71:0.451:2
chr5	131796498	rs2522048	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:32:76:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,78:33:78:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,88:32:88:1.00:2
chr5	131805735	rs2706379	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:93,87:33:180:0.483:2	0/1:57,84:32:141:0.596:2	./.	./.	0/1:101,88:32:189:0.466:2	./.	0/1:3,187:32:190:0.984:2	0/1:99,79:32:178:0.444:2	0/1:84,94:34:178:0.528:2	./.	0/1:68,92:33:162:0.575:2
chr5	131805753	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:32:185:0.022:2	./.	./.	./.	./.	./.
chr5	131822055	rs9282762	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:13,5:26:18:0.278:2	0/1:12,7:27:19:0.368:2	0/1:0,5:30:5:1.00:2	./.	./.	./.	0/1:23,15:23:38:0.395:2	0/1:1,34:25:35:0.971:2	0/1:21,13:27:34:0.382:2	0/1:0,23:26:23:1.00:2	./.
chr5	131892357	rs2706335	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:31:31:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,2:30:2:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,30:32:30:1.00:2	0/1:2,35:31:37:0.946:2	0/1:0,35:31:35:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,47:31:47:1.00:2
chr5	131995964	rs20541	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,16:31:45:0.356:2	0/1:15,14:30:29:0.483:2	./.	0/1:17,18:30:35:0.514:2	0/1:9,13:30:22:0.591:2	0/1:0,35:29:35:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,42:31:42:1.00:2	./.	./.	0/1:35,26:29:61:0.426:2
chr5	132042108	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,48:32:83:0.578:2
chr5	132042119	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:34:164:0.024:2	./.	./.	./.
chr5	132042146	rs3798130	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,63:32:134:0.470:2	0/1:77,57:31:134:0.425:2	./.	./.	./.	0/1:120,70:33:190:0.368:2	./.	0/1:94,53:32:147:0.361:2
chr5	132051532	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,4:34:70:0.057:2	./.	./.	./.	./.	./.	./.
chr5	132098242	rs30510	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,159:28:159:1.00:2	0/1:0,134:28:134:1.00:2	0/1:0,32:29:32:1.00:2	0/1:0,182:29:182:1.00:2	0/1:0,188:29:188:1.00:2	0/1:0,189:28:189:1.00:2	0/1:0,191:29:191:1.00:2	0/1:0,190:29:190:1.00:2	0/1:0,177:30:177:1.00:2	0/1:0,185:29:185:1.00:2	0/1:0,182:29:182:1.00:2
chr5	132099999	rs30507	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,89:28:185:0.484:2	./.	./.	./.	./.	0/1:98,86:29:184:0.467:2	./.	./.
chr5	132150948	rs40470	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,83:33:83:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,75:33:75:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,59:33:60:1.00:2	0/1:0,68:32:68:1.00:2
chr5	132151071	rs757537	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,8:31:15:0.533:2	./.	./.	./.	./.	./.	./.
chr5	132151196	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	132151751	rs59690351	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,18:30:54:0.333:2	./.	./.	./.	./.	./.	./.
chr5	132159134	rs4705870	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,7:30:21:0.333:2	./.	./.	./.	./.	./.	./.
chr5	132159576	rs144919403	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,25:29:53:0.481:2
chr5	132160057	rs35534543	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,24:32:49:0.490:2	./.	./.	./.	./.	./.	./.
chr5	132161691	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.
chr5	132161747	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.
chr5	132198100	rs10491279	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:34,20:31:54:0.370:2	0/1:25,17:32:42:0.405:2	./.	./.	./.	./.	./.	./.	./.	0/1:37,20:31:57:0.351:2	./.
chr5	132198199	rs254286	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,12:34:21:0.571:2	0/1:5,14:33:19:0.737:2	./.	0/1:23,11:33:34:0.324:2	0/1:5,7:32:12:0.583:2	0/1:0,15:32:15:1.00:2	0/1:0,16:33:16:1.00:2	0/1:15,14:32:29:0.483:2	0/1:17,9:33:26:0.346:2	0/1:5,9:32:14:0.643:2	0/1:0,31:33:31:1.00:2
chr5	132210100	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,4:34:24:0.167:2	./.	./.	./.	./.
chr5	132220748	rs45441396	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:71,15:32:86:0.174:2	0/1:28,6:32:34:0.176:2	0/1:17,4:32:21:0.190:2	./.	./.	./.	./.	./.	./.	0/1:99,24:31:123:0.195:2	./.
chr5	132232315	rs739863	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,93:32:94:0.989:2	./.	./.	./.	./.	./.	./.
chr5	132267859	rs56157864	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,64:30:66:0.970:2	./.	./.	./.	./.	./.	./.
chr5	132335888	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:32:46:0.087:2	./.
chr5	132437531	rs1131809	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,38:32:89:0.427:2	./.	./.	./.
chr5	132535046	rs3749817	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:30:7:1.00:2	./.	0/1:35,27:31:62:0.435:2	./.	0/1:38,32:32:70:0.457:2	0/1:44,26:31:70:0.371:2	./.	./.	./.
chr5	132561468	rs61741674	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,27:30:56:0.491:2	./.	./.	./.	./.	./.	./.	./.
chr5	132652281	rs17683306	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,27:31:54:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr5	132763305	rs371705747	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,11:11:43:0.256:2
chr5	133295549	rs143569735	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,75:31:138:0.543:2	0/1:46,49:32:95:0.516:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	133311607	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,6:27:194:0.031:2	./.	./.	./.	./.
chr5	133328003	rs142141751	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,60:29:130:0.462:2	./.	./.
chr5	133328662	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,4:31:112:0.036:2	./.	./.	./.	./.	./.	./.	./.
chr5	133328702	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,4:31:81:0.049:2	./.	./.	./.	./.	./.	./.	./.
chr5	133451652	rs149417339	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,58:32:124:0.468:2	./.	./.	./.	./.	./.
chr5	133451683	rs5742913	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,57:27:114:0.500:2	./.	./.	0/1:57,52:27:110:0.477:2	./.	./.
chr5	133494188	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:30:10:0.300:2	./.	0/1:72,10:28:82:0.122:2	./.	./.	./.	./.	./.	./.
chr5	133502872	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:32:146:0.027:2	./.	./.	./.
chr5	133640193	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:32:139:0.029:2	./.
chr5	133887780	rs12163993	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:102,84:33:186:0.452:2	0/1:72,49:32:121:0.405:2	./.	./.	0/1:5,184:32:189:0.974:2	./.	./.	./.	./.	./.	./.
chr5	133895561	rs115657900	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,28:32:62:0.452:2	./.
chr5	133901939	rs115315395	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,45:30:78:0.577:2	0/1:25,26:31:51:0.510:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	133948372	rs200681744	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,10:25:81:0.123:2	0/1:40,7:26:47:0.149:2	./.	./.	0/1:79,10:27:89:0.112:2	./.	./.	./.
chr5	133956668	rs11558540	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,45:32:136:0.331:2	0/1:86,59:33:145:0.407:2	./.	./.
chr5	133956672	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:33:142:0.028:2	./.	./.
chr5	133997107	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:32:176:0.023:2	./.	./.	./.	./.
chr5	134022575	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:33:63:0.063:2	./.
chr5	134044431	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:146,4:31:150:0.027:2	./.	./.	./.	./.	./.	./.
chr5	134076812	rs12657663	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,55:31:56:0.982:2	./.	./.	0/1:38,38:31:76:0.500:2	./.	./.	./.
chr5	134109529	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,5:31:118:0.042:2	./.	./.
chr5	134194848	rs62380022	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,20:30:46:0.435:2	./.	./.	./.	./.	./.
chr5	134223593	rs3733897	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,164:32:164:1.00:2	./.	./.	0/1:2,170:33:172:0.988:2	./.	./.	./.
chr5	134294804	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:31:142:0.028:2	./.	./.	./.	./.
chr5	134343661	rs10044000	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,101:33:199:0.508:2	./.	0/1:108,89:32:197:0.452:2	0/1:103,93:33:196:0.474:2	./.	0/1:81,105:33:186:0.565:2	./.	./.
chr5	134343799	rs177252	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:1,118:31:119:0.992:2	0/1:0,104:30:104:1.00:2	0/1:16,15:28:31:0.484:2	./.	./.	0/1:103,73:31:176:0.415:2	./.	0/1:103,82:30:185:0.443:2	./.	0/1:1,139:30:141:0.993:2	./.
chr5	134364518	rs479632	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	0/1:12,18:32:30:0.600:2	./.	0/1:21,6:32:27:0.222:2	./.	0/1:0,13:31:13:1.00:2	./.
chr5	134364672	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:32:83:0.048:2	./.	./.
chr5	134364996	rs1131611	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:31:5:1.00:2	./.	0/1:14,13:31:27:0.481:2	./.	0/1:15,16:30:31:0.516:2	./.	0/1:17,12:33:29:0.414:2	./.	./.
chr5	134670765	rs3210047	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:77,81:32:158:0.513:2	0/1:64,46:32:110:0.418:2	./.	0/1:103,81:32:184:0.440:2	./.	./.	./.	0/1:100,90:32:190:0.474:2	./.	./.	./.
chr5	134782414	rs12518053	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:27,35:31:62:0.565:2	0/1:17,20:32:37:0.541:2	./.	0/1:29,32:32:61:0.525:2	./.	0/1:0,71:31:71:1.00:2	0/1:40,43:32:83:0.518:2	0/1:50,43:32:93:0.462:2	0/1:45,36:32:81:0.444:2	0/1:0,67:31:67:1.00:2	0/1:32,32:32:64:0.500:2
chr5	134782450	rs12520799	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,26:32:54:0.481:2	0/1:19,17:33:36:0.472:2	0/1:2,3:31:5:0.600:2	0/1:22,26:32:48:0.542:2	./.	0/1:0,67:32:67:1.00:2	0/1:43,30:32:74:0.411:2	0/1:49,41:32:90:0.456:2	0/1:39,36:32:75:0.480:2	0/1:1,55:32:57:0.982:2	0/1:36,34:32:70:0.486:2
chr5	134782510	rs12520809	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,22:28:49:0.449:2	0/1:12,18:29:30:0.600:2	0/1:0,5:31:5:1.00:2	0/1:14,12:29:26:0.462:2	./.	0/1:0,43:29:43:1.00:2	0/1:26,19:29:45:0.422:2	0/1:26,27:30:53:0.509:2	0/1:26,22:30:48:0.458:2	0/1:1,35:28:36:0.972:2	0/1:23,28:28:51:0.549:2
chr5	134782576	rs1031844	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,16:32:41:0.390:2	0/1:6,15:32:21:0.714:2	0/1:0,4:32:4:1.00:2	0/1:14,9:32:23:0.391:2	./.	0/1:0,40:31:40:1.00:2	0/1:15,8:32:23:0.348:2	0/1:18,26:32:44:0.591:2	0/1:16,15:33:31:0.484:2	0/1:0,19:32:19:1.00:2	0/1:22,12:31:34:0.353:2
chr5	134870913	rs8192559	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,50:31:105:0.476:2	./.	./.	./.	./.
chr5	134871440	rs8192558	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,42:31:77:0.545:2	./.	0/1:47,24:32:71:0.338:2	./.	0/1:43,31:32:74:0.419:2	./.	./.	./.
chr5	134907552	rs2547	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,16:33:45:0.356:2	./.	./.
chr5	135178081	rs6596269	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:28:10:0.500:2	./.	0/1:86,39:32:125:0.312:2	0/1:57,46:32:103:0.447:2	./.	0/1:77,45:32:122:0.369:2	0/1:73,48:34:121:0.397:2	0/1:63,30:32:93:0.323:2	./.
chr5	135178124	rs2304075	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:29:89:1.00:2	0/1:0,51:29:51:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,98:29:98:1.00:2	0/1:1,106:29:107:0.991:2	0/1:0,91:29:91:1.00:2	0/1:0,94:29:94:1.00:2	0/1:0,121:29:121:1.00:2	0/1:0,95:30:95:1.00:2	0/1:66,28:31:94:0.298:2	0/1:1,114:29:115:0.991:2
chr5	135178142	rs6596270	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:30:7:0.571:2	./.	0/1:57,37:30:94:0.394:2	0/1:45,37:30:82:0.451:2	./.	0/1:65,38:30:103:0.369:2	0/1:48,30:31:78:0.385:2	0/1:57,21:31:78:0.269:2	./.
chr5	135207187	rs2304079	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,27:33:50:0.540:2	./.	0/1:25,30:33:55:0.545:2	./.	./.
chr5	135207382	rs2304080	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,38:32:54:0.704:2	0/1:14,27:32:41:0.659:2	0/1:2,2:33:4:0.500:2	0/1:27,29:32:56:0.518:2	0/1:28,28:31:56:0.500:2	0/1:1,66:31:67:0.985:2	0/1:3,62:32:65:0.954:2	0/1:0,75:32:75:1.00:2	0/1:0,44:33:44:1.00:2	0/1:19,22:33:41:0.537:2	0/1:20,18:32:38:0.474:2
chr5	135223713	rs9327734	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:121,66:30:187:0.353:2	0/1:105,74:31:179:0.413:2	0/1:108,83:31:191:0.435:2	0/1:118,58:31:176:0.330:2	./.	./.	./.
chr5	135228165	rs2069885	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,44:31:97:0.454:2	./.	0/1:53,35:32:88:0.398:2	./.	./.	./.
chr5	135231296	rs193148109	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,36:32:87:0.414:2	./.	./.	./.	./.	./.	./.	./.
chr5	135273232	rs201662172	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,22:32:30:0.733:2	./.	./.	./.	./.
chr5	135276314	rs40986	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,136:32:136:1.00:2	0/1:0,90:31:90:1.00:2	0/1:3,4:31:7:0.571:2	0/1:66,67:31:133:0.504:2	0/1:0,125:31:125:1.00:2	0/1:0,148:31:148:1.00:2	0/1:2,122:32:124:0.984:2	0/1:0,126:31:126:1.00:2	0/1:1,133:32:134:0.993:2	0/1:68,57:31:126:0.456:2	0/1:81,68:31:149:0.456:2
chr5	135276814	rs2066913	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:32,20:32:52:0.385:2	0/1:15,19:31:34:0.559:2	./.	./.	0/1:33,30:30:63:0.476:2	0/1:46,29:30:75:0.387:2	0/1:20,10:29:30:0.333:2	0/1:34,27:30:61:0.443:2	0/1:1,71:31:72:0.986:2	0/1:37,20:30:57:0.351:2	0/1:48,44:30:92:0.478:2
chr5	135276847	rs31547	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:30:59:1.00:2	0/1:0,38:29:38:1.00:2	0/1:3,6:30:9:0.667:2	0/1:36,33:30:69:0.478:2	0/1:0,64:29:64:1.00:2	0/1:1,70:29:71:0.986:2	0/1:0,33:28:33:1.00:2	0/1:0,59:29:59:1.00:2	0/1:0,70:30:70:1.00:2	0/1:36,28:30:64:0.438:2	0/1:51,36:29:87:0.414:2
chr5	135286946	rs78234114	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,61:29:107:0.570:2	./.
chr5	135287029	rs31517	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,72:29:72:1.00:2	0/1:0,45:28:45:1.00:2	./.	0/1:47,44:29:91:0.484:2	0/1:0,21:27:21:1.00:2	0/1:41,41:28:82:0.500:2	0/1:0,70:29:70:1.00:2	0/1:48,38:28:86:0.442:2	0/1:2,88:29:90:0.978:2	0/1:47,42:28:89:0.472:2	0/1:44,34:27:78:0.436:2
chr5	135288632	rs62623707	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,37:31:81:0.457:2	./.	./.	0/1:37,29:32:66:0.439:2	./.	./.
chr5	135382989	rs1442	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,43:33:83:0.518:2	0/1:20,22:32:42:0.524:2	0/1:17,4:35:21:0.190:2	0/1:58,48:33:106:0.453:2	./.	./.	0/1:110,79:33:189:0.418:2	0/1:101,65:33:167:0.392:2	0/1:55,51:34:106:0.481:2	./.	0/1:0,91:32:91:1.00:2
chr5	135388663	rs1054124	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:76,68:32:144:0.472:2	0/1:40,23:32:63:0.365:2	0/1:7,12:33:19:0.632:2	0/1:91,96:32:187:0.513:2	0/1:101,59:32:160:0.369:2	./.	0/1:81,83:31:164:0.506:2	./.	./.	./.	./.
chr5	135391374	rs1133170	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,7:31:20:0.350:2	0/1:11,13:32:24:0.542:2	0/1:3,4:32:7:0.571:2	0/1:24,16:31:40:0.400:2	0/1:13,18:29:31:0.581:2	./.	0/1:16,11:32:27:0.407:2	./.	./.	./.	./.
chr5	135392426	rs4669	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,58:29:127:0.457:2	0/1:51,60:28:111:0.541:2	0/1:12,12:30:24:0.500:2	0/1:97,88:28:185:0.476:2	0/1:77,60:29:137:0.438:2	./.	0/1:79,60:29:139:0.432:2	./.	./.	./.	./.
chr5	135496592	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:32:138:0.029:2	./.	./.	./.
chr5	135510078	rs201309917	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,63:32:173:0.364:2
chr5	135692575	rs2546661	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,53:31:99:0.535:2	0/1:46,55:31:101:0.545:2	0/1:61,47:31:108:0.435:2	./.	./.	./.	./.
chr5	136324148	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:33:79:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	136448157	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:27:54:0.074:2	./.	./.	./.	./.
chr5	136448163	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	136969793	rs2301708	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,21:32:55:0.382:2	0/1:10,3:32:13:0.231:2	./.	0/1:29,23:31:52:0.442:2	0/1:41,37:31:78:0.474:2	./.	./.	./.	./.	./.	./.
chr5	137028029	rs2905608	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,188:30:188:1.00:2	0/1:0,96:30:96:1.00:2	0/1:17,28:30:45:0.622:2	0/1:1,182:30:184:0.995:2	0/1:0,182:31:182:1.00:2	./.	0/1:1,182:31:183:0.995:2	0/1:1,185:31:186:0.995:2	0/1:98,98:32:196:0.500:2	0/1:0,189:30:190:1.00:2	./.
chr5	137206560	rs6890689	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:33:59:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,69:33:69:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,74:33:74:1.00:2	0/1:0,84:33:84:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,61:32:61:1.00:2
chr5	137244517	rs1880458	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:31:103:1.00:2	0/1:0,72:31:72:1.00:2	0/1:2,8:30:10:0.800:2	0/1:72,78:31:150:0.520:2	0/1:1,80:29:81:0.988:2	0/1:0,109:30:109:1.00:2	0/1:77,39:29:116:0.336:2	./.	0/1:1,164:31:165:0.994:2	0/1:0,135:31:135:1.00:2	0/1:116,79:31:195:0.405:2
chr5	137244546	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr5	137259179	rs12187140	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:33:48:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,60:33:60:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,69:33:69:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,96:33:96:1.00:2
chr5	137278682	rs33956817	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,17:32:49:0.347:2	./.	./.	./.	./.	./.	./.	0/1:33,28:33:61:0.459:2
chr5	137281928	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:32:117:0.034:2	./.	./.	./.	./.
chr5	137347498	rs10064910	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,78:32:78:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,83:33:83:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,108:33:108:1.00:2
chr5	137419989	rs2040862	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,18:30:33:0.545:2	./.	./.	./.	./.	./.	0/1:40,35:32:75:0.467:2
chr5	137426447	rs6596422	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:2,45:32:47:0.957:2	0/1:0,30:32:30:1.00:2	0/1:3,3:32:6:0.500:2	./.	./.	0/1:0,47:32:47:1.00:2	0/1:36,24:32:60:0.400:2	./.	0/1:0,56:32:56:1.00:2	0/1:0,43:33:43:1.00:2	./.
chr5	137465027	rs191188008	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,44:30:100:0.440:2	./.
chr5	137475787	rs423258	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,75:32:77:0.974:2	0/1:37,25:31:62:0.403:2	./.	0/1:0,37:31:37:1.00:2	./.	./.	0/1:47,24:32:71:0.338:2	0/1:54,40:32:94:0.426:2
chr5	137476416	rs412051	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:30:72:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,118:31:118:1.00:2	0/1:0,123:30:123:1.00:2	0/1:0,117:30:117:1.00:2	0/1:0,108:30:108:1.00:2	0/1:0,118:30:118:1.00:2	0/1:0,112:31:112:1.00:2	0/1:0,91:30:91:1.00:2	0/1:2,127:30:129:0.984:2
chr5	137480924	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:32:112:0.036:2	./.	./.
chr5	137486617	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:32:121:0.033:2	./.	./.	./.
chr5	137500665	rs11750814	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,87:32:195:0.446:2	./.	./.	./.	0/1:108,87:32:195:0.446:2	./.	./.
chr5	137503737	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,6:18:33:0.188:2	./.	./.	0/1:32,7:20:39:0.179:2	./.	./.	./.
chr5	137503739	rs201078605	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,10:24:25:0.400:2	./.	./.	0/1:20,15:21:35:0.429:2	0/1:24,21:19:45:0.467:2	0/1:30,22:23:52:0.423:2	0/1:32,22:18:54:0.407:2	0/1:30,31:24:62:0.508:2	0/1:36,13:21:49:0.265:2	0/1:35,17:23:52:0.327:2	0/1:19,13:26:32:0.406:2
chr5	137506524	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2	./.	./.	./.
chr5	137515393	rs201784256	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:31:120:0.033:2	./.	./.	./.
chr5	137515451	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:33:191:0.021:2	./.	./.	./.
chr5	137519701	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:36:99:0.040:2	./.	./.
chr5	137524719	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,79:31:188:0.420:2	./.	./.	./.
chr5	137527156	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:33:71:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	137627745	rs199830488	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,41:32:78:0.526:2	0/1:25,16:32:41:0.390:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	137664241	rs11567968	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,14:30:31:0.452:2	./.	./.	./.	0/1:44,28:31:72:0.389:2	./.	./.
chr5	137665323	rs3734166	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,60:32:60:1.00:2	0/1:0,34:31:35:1.00:2	0/1:1,2:33:3:0.667:2	./.	./.	0/1:30,20:31:50:0.400:2	0/1:44,13:32:57:0.228:2	./.	0/1:32,44:33:76:0.579:2	0/1:0,57:32:57:1.00:2	./.
chr5	137708434	rs4835678	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,39:32:98:0.398:2	0/1:45,28:32:73:0.384:2	0/1:0,10:31:10:1.00:2	0/1:56,55:31:111:0.495:2	0/1:2,62:31:64:0.969:2	./.	0/1:65,40:31:105:0.381:2	0/1:141,5:32:146:0.034:2	0/1:0,130:32:130:1.00:2	0/1:51,42:32:93:0.452:2	0/1:0,126:32:126:1.00:2
chr5	137717213	rs10073922	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,6:31:16:0.375:2	0/1:48,34:31:82:0.415:2	0/1:58,44:31:102:0.431:2	./.	0/1:56,29:30:85:0.341:2	./.	./.	./.	0/1:1,97:31:98:0.990:2
chr5	137717265	rs6865472	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,83:32:83:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,141:31:141:1.00:2	0/1:0,126:30:126:1.00:2	0/1:0,126:31:126:1.00:2	0/1:0,152:32:152:1.00:2	0/1:0,120:32:120:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,101:32:101:1.00:2
chr5	137733891	rs17294563	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,41:31:98:0.418:2	./.	./.	./.	0/1:45,37:33:83:0.451:2	./.	./.
chr5	137754695	rs7726234	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,32:30:87:0.368:2	0/1:26,29:30:55:0.527:2	0/1:0,14:31:14:1.00:2	0/1:77,53:30:130:0.408:2	0/1:1,123:31:124:0.992:2	./.	0/1:77,64:30:141:0.454:2	./.	0/1:0,138:31:138:1.00:2	0/1:45,62:30:107:0.579:2	0/1:1,104:30:105:0.990:2
chr5	137754770	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,5:28:141:0.035:2	./.	./.	./.	./.
chr5	137754808	rs7706614	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:104,53:31:157:0.338:2	./.	./.	./.	0/1:70,48:32:118:0.407:2	./.	./.
chr5	137766066	rs61749634	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,42:30:95:0.442:2	./.	./.	./.	0/1:78,77:31:155:0.497:2	./.	./.
chr5	137781453	rs114042687	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,10:32:11:0.909:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	137803117	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:32:70:0.057:2	./.	./.	./.
chr5	137848498	rs145474099	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:32:95:0.042:2	./.	./.
chr5	137892170	rs10117	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:44,46:33:90:0.511:2	0/1:26,21:32:47:0.447:2	./.	./.	0/1:0,59:31:59:1.00:2	./.	0/1:38,42:32:80:0.525:2	./.	0/1:55,54:33:109:0.495:2	0/1:0,101:31:101:1.00:2	0/1:46,45:32:91:0.495:2
chr5	137892514	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,6:30:117:0.051:2	./.	./.	./.	./.	./.
chr5	137892523	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:31:117:0.034:2	./.	./.	./.	./.	./.
chr5	137895594	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,4:31:60:0.067:2	./.	./.	./.	./.	./.	./.
chr5	137897314	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,6:32:195:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	137902339	rs1042665	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:31,20:32:51:0.392:2	0/1:9,13:32:22:0.591:2	./.	./.	0/1:0,42:32:42:1.00:2	./.	./.	./.	./.	0/1:18,27:33:45:0.600:2	0/1:19,28:32:47:0.596:2
chr5	138147943	rs11552054	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,32:32:58:0.552:2	./.	./.	./.	./.	./.	./.
chr5	138147949	rs28363395	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,20:30:66:0.303:2	./.	./.	./.	./.
chr5	138209404	rs11744283	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,96:30:186:0.516:2	./.	0/1:80,66:30:146:0.452:2	./.	./.	./.	./.	./.
chr5	138221989	rs288028	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,3:29:11:0.273:2	0/1:33,21:30:54:0.389:2	0/1:21,22:29:43:0.512:2	0/1:35,22:29:57:0.386:2	0/1:14,10:29:24:0.417:2	./.	0/1:31,26:30:57:0.456:2	0/1:15,22:30:37:0.595:2	./.
chr5	138223202	rs61736921	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,25:32:61:0.410:2	./.	./.	./.	./.
chr5	138240085	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:32:171:0.023:2	./.	./.
chr5	138253446	rs28363462	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,27:31:44:0.614:2	./.	./.	./.	./.
chr5	138260257	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:31:151:0.026:2	./.	./.
chr5	138266546	rs1059110	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,7:32:21:0.333:2	0/1:71,68:33:139:0.489:2	0/1:74,57:33:131:0.435:2	0/1:86,85:32:171:0.497:2	0/1:5,155:33:160:0.969:2	./.	0/1:126,59:34:185:0.319:2	0/1:65,62:33:127:0.488:2	./.
chr5	138266552	rs11552052	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,79:33:170:0.465:2	./.	./.	./.	0/1:68,63:33:131:0.481:2	./.
chr5	138269554	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:34:177:0.023:2	./.	./.	./.
chr5	138282841	rs34214251	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,75:32:156:0.481:2	./.	./.	./.	./.
chr5	138362576	rs201222730	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:34:183:0.022:2	./.	./.	./.
chr5	138456815	rs3088052	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:29:10:0.400:2	0/1:74,48:30:122:0.393:2	0/1:34,50:30:84:0.595:2	0/1:83,48:29:131:0.366:2	0/1:69,52:29:121:0.430:2	0/1:73,51:29:125:0.411:2	0/1:56,52:30:108:0.481:2	0/1:53,49:30:102:0.480:2	./.
chr5	138643309	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,6:29:192:0.031:2	./.	./.
chr5	138643373	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:31:143:0.028:2	./.	./.	./.	./.	./.
chr5	138657657	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:34:141:0.028:2	./.	./.
chr5	138661293	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,10:33:189:0.053:2	./.	./.
chr5	138661332	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,8:32:185:0.043:2	./.	./.
chr5	138661880	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:34:150:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	138707916	rs72552250	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,8:32:38:0.211:2	./.
chr5	138713959	rs6596474	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,101:30:101:1.00:2	0/1:0,45:29:45:1.00:2	0/1:0,19:28:19:1.00:2	0/1:0,143:30:143:1.00:2	0/1:0,173:29:173:1.00:2	0/1:1,169:30:170:0.994:2	0/1:0,156:30:156:1.00:2	0/1:0,193:29:193:1.00:2	0/1:0,123:30:123:1.00:2	0/1:0,105:30:105:1.00:2	0/1:0,64:29:64:1.00:2
chr5	138717709	rs6886922	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,81:32:152:0.533:2	./.	./.	0/1:50,58:32:108:0.537:2	./.
chr5	138728483	rs10078623	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,5:31:5:1.00:2	./.	0/1:0,2:33:2:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,3:34:3:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,3:33:3:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,4:34:4:1.00:2
chr5	138728533	rs10063870	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,8:30:8:1.00:2	./.	0/1:0,11:31:11:1.00:2	./.	0/1:3,4:33:7:0.571:2	0/1:0,6:33:6:1.00:2	./.
chr5	138730037	rs11748963	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	./.
chr5	138732579	rs10900862	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,58:32:121:0.479:2	0/1:41,46:32:88:0.529:2	0/1:15,11:31:26:0.423:2	0/1:1,164:31:165:0.994:2	./.	0/1:4,174:31:178:0.978:2	./.	0/1:1,159:31:160:0.994:2	0/1:111,77:33:188:0.410:2	0/1:171,4:32:175:0.023:2	0/1:100,77:32:177:0.435:2
chr5	138738373	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:32:46:0.087:2	./.	./.	./.	./.	./.
chr5	138773090	rs10900864	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,71:33:149:0.477:2	0/1:43,34:31:78:0.442:2	0/1:12,8:32:20:0.400:2	0/1:1,185:32:186:0.995:2	./.	0/1:1,161:32:162:0.994:2	./.	0/1:6,176:32:182:0.967:2	0/1:95,98:33:193:0.508:2	0/1:60,69:32:129:0.535:2	0/1:98,87:33:185:0.470:2
chr5	138837339	rs375731899	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,50:30:127:0.397:2	./.	./.	./.	./.	./.
chr5	138856982	rs7380824	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:33:11:0.636:2	./.	0/1:56,49:32:105:0.467:2	./.	./.	./.	0/1:68,58:33:126:0.460:2	0/1:0,85:33:85:1.00:2	./.
chr5	138857919	rs1131769	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,42:30:83:0.506:2	0/1:20,22:30:42:0.524:2	0/1:0,4:30:4:1.00:2	0/1:50,33:29:84:0.398:2	0/1:1,81:29:82:0.988:2	0/1:0,71:29:71:1.00:2	0/1:0,68:30:68:1.00:2	0/1:0,70:29:70:1.00:2	0/1:0,69:30:69:1.00:2	0/1:1,84:30:85:0.988:2	0/1:1,65:29:66:0.985:2
chr5	138857925	rs78233829	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	0/1:52,31:33:83:0.373:2	./.	./.	./.	0/1:40,29:33:69:0.420:2	0/1:0,82:33:82:1.00:2	./.
chr5	138861078	rs11554776	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:31:15:0.533:2	./.	0/1:105,89:31:194:0.459:2	./.	./.	./.	0/1:75,55:32:130:0.423:2	0/1:0,101:31:101:1.00:2	./.
chr5	138861146	rs7447927	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,60:32:102:0.588:2	0/1:26,27:32:53:0.509:2	0/1:3,3:34:6:0.500:2	0/1:66,73:32:139:0.525:2	0/1:75,76:32:151:0.503:2	0/1:0,160:32:160:1.00:2	0/1:70,82:33:152:0.539:2	0/1:1,156:32:159:0.994:2	0/1:81,63:34:144:0.438:2	./.	0/1:0,111:32:111:1.00:2
chr5	138994505	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:191,5:29:196:0.026:2	./.	./.	0/1:141,8:30:149:0.054:2	0/1:186,8:30:194:0.041:2	./.	0/1:183,13:30:196:0.066:2	./.
chr5	138994515	.	C	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:179,5:32:184:0.027:2	./.	./.	0/1:138,8:33:146:0.055:2	0/1:173,4:33:177:0.023:2	./.	0/1:181,12:33:193:0.062:2	./.
chr5	139060486	rs356445	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,7:32:11:0.636:2	0/1:0,4:33:4:1.00:2
chr5	139060702	rs202150540	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,6:21:47:0.128:2	./.	./.	./.	0/1:29,4:24:33:0.121:2	./.
chr5	139062443	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,7:29:142:0.049:2	./.	./.	./.
chr5	139228192	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	139231255	rs75431091	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,18:31:51:0.353:2	./.	./.	./.	./.	0/1:15,31:32:46:0.674:2	./.	./.
chr5	139239515	rs3214446	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,36:31:92:0.391:2	./.	./.	./.
chr5	139497373	rs78410921	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,10:33:35:0.286:2	./.	./.	./.	./.	./.	./.	./.
chr5	139497605	rs2013169	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,18:31:40:0.450:2	./.	./.	./.	./.	./.	./.
chr5	139499222	rs187531203	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,14:32:39:0.359:2	./.	./.	./.	./.	./.	./.
chr5	139500500	rs191913297	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:31:7:0.857:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	139501147	rs10060173	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,7:32:16:0.438:2	./.	0/1:49,62:31:111:0.559:2	./.	./.	./.	./.	./.	./.
chr5	139504013	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:31:153:0.026:2
chr5	139506617	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,3:32:50:0.060:2	./.	./.	./.	./.	./.
chr5	139508113	rs115235886	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,50:33:95:0.526:2	./.	./.	./.	./.	./.
chr5	139574050	rs11538394	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,15:31:29:0.517:2	0/1:35,19:32:54:0.352:2	0/1:14,27:32:41:0.659:2	./.	./.	0/1:20,20:33:40:0.500:2	./.
chr5	139722345	rs2074611	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,87:31:162:0.540:2	./.	./.	./.	0/1:100,86:32:186:0.462:2	./.	./.	0/1:79,91:32:170:0.535:2
chr5	139722384	rs200356142	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:111,12:22:123:0.098:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,10:19:106:0.094:2	0/1:132,9:23:141:0.064:2
chr5	139740454	rs34507975	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,41:30:90:0.456:2	0/1:28,19:30:47:0.404:2	./.	./.	./.	./.	0/1:33,45:31:78:0.577:2	./.
chr5	139741370	rs717097	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,55:31:55:1.00:2	0/1:0,25:31:25:1.00:2	0/1:3,5:29:8:0.625:2	./.	0/1:30,20:29:50:0.400:2	./.	0/1:1,59:30:60:0.983:2	0/1:0,72:30:72:1.00:2	0/1:0,93:31:93:1.00:2	./.	0/1:52,52:30:104:0.500:2
chr5	139745126	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,6:30:189:0.032:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	139745154	rs6860077	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,152:30:152:1.00:2	0/1:0,106:29:106:1.00:2	0/1:13,10:31:23:0.435:2	0/1:103,84:28:187:0.449:2	0/1:2,165:29:168:0.988:2	./.	0/1:1,146:30:147:0.993:2	0/1:2,160:29:162:0.988:2	0/1:1,148:30:149:0.993:2	0/1:89,64:29:153:0.418:2	0/1:78,85:29:163:0.521:2
chr5	139745584	rs76702065	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,12:14:150:0.081:2	./.
chr5	139745800	rs34298619	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,14:30:53:0.264:2	./.
chr5	139752329	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,4:32:107:0.037:2	./.	./.	./.	./.	./.	./.
chr5	139851856	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:33:97:0.041:2
chr5	139864826	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,4:29:100:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr5	139936760	rs250426	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:31:66:1.00:2	0/1:0,37:30:37:1.00:2	0/1:2,5:30:7:0.714:2	0/1:38,31:30:69:0.449:2	0/1:0,40:30:40:1.00:2	./.	0/1:0,26:28:27:1.00:2	0/1:1,65:28:66:0.985:2	0/1:0,64:29:64:1.00:2	0/1:16,21:29:37:0.568:2	0/1:8,32:29:40:0.800:2
chr5	139938237	rs145698446	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,55:32:132:0.417:2	./.	./.
chr5	139938365	rs111366985	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,53:28:87:0.609:2
chr5	139939961	rs61736940	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,33:32:72:0.458:2	./.
chr5	139940230	rs114266519	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,50:31:86:0.581:2	./.	./.	./.	./.	./.	./.	./.
chr5	139940233	rs250431	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:31:50:1.00:2	0/1:0,32:32:32:1.00:2	0/1:6,4:29:10:0.400:2	0/1:36,50:31:86:0.581:2	0/1:1,57:31:58:0.983:2	./.	0/1:0,82:31:82:1.00:2	0/1:0,96:31:96:1.00:2	0/1:0,63:32:63:1.00:2	0/1:29,19:31:48:0.396:2	0/1:32,33:32:65:0.508:2
chr5	139940302	rs1800882	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,17:31:44:0.386:2	./.	./.
chr5	139941228	rs250430	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:29:53:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,80:29:80:1.00:2	0/1:0,96:30:96:1.00:2	0/1:55,41:29:96:0.427:2	0/1:0,102:30:102:1.00:2	0/1:0,112:29:112:1.00:2	0/1:0,75:31:75:1.00:2	0/1:1,64:30:65:0.985:2	0/1:34,43:30:77:0.558:2
chr5	139943168	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:29:59:0.068:2	./.	./.	./.	./.	./.
chr5	139947769	rs368323800	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:31:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	139948616	rs6550	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:31:8:0.375:2	0/1:48,41:30:89:0.461:2	./.	0/1:0,79:30:79:1.00:2	./.	./.	./.	0/1:42,38:31:80:0.475:2	0/1:46,35:32:81:0.432:2
chr5	140011468	rs4914	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,57:33:111:0.514:2	./.	./.	./.	./.	./.	0/1:47,28:33:75:0.373:2	./.
chr5	140021482	rs11554680	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,36:30:76:0.474:2	0/1:33,52:30:85:0.612:2	./.	./.	./.	./.	./.	./.
chr5	140023238	rs17208187	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,57:33:121:0.475:2	0/1:69,68:32:137:0.496:2	./.	./.	./.	./.	./.	./.
chr5	140048209	rs2251860	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,64:33:143:0.448:2	0/1:67,57:32:124:0.460:2	0/1:76,67:32:143:0.469:2	0/1:76,50:32:126:0.397:2	./.	./.	0/1:48,53:33:101:0.525:2	./.
chr5	140048267	rs2530245	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:29:94:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,15:29:15:1.00:2	0/1:1,106:29:107:0.991:2	0/1:0,105:29:105:1.00:2	0/1:0,121:29:121:1.00:2	0/1:0,112:29:112:1.00:2	0/1:0,124:29:124:1.00:2	0/1:0,110:29:110:1.00:2	0/1:0,92:29:92:1.00:2	0/1:1,134:29:135:0.993:2
chr5	140048544	rs2286394	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,43:31:79:0.544:2	0/1:42,49:31:91:0.538:2	./.	./.	./.	./.	./.	./.
chr5	140048707	rs35983033	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,33:33:75:0.440:2	./.
chr5	140051086	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:179,14:30:194:0.073:2	./.	./.	./.	./.	./.	./.
chr5	140051129	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:31:151:0.027:2
chr5	140051185	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:146,4:33:150:0.027:2	./.	./.	./.	./.	./.	./.
chr5	140166150	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,7:32:62:0.113:2	./.	./.	./.	./.	./.	./.
chr5	140166332	rs201063142	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,16:31:48:0.333:2	./.	./.	./.
chr5	140167303	rs377692615	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,3:32:46:0.067:2	./.	./.
chr5	140167351	rs370018893	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,3:36:31:0.097:2	./.	./.
chr5	140167463	rs3733710	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,21:29:22:0.955:2	0/1:0,11:31:11:1.00:2	0/1:0,4:30:4:1.00:2	0/1:11,11:31:22:0.500:2	0/1:3,15:30:18:0.833:2	0/1:14,16:31:30:0.533:2	./.	0/1:0,21:30:21:1.00:2	0/1:0,17:30:17:1.00:2	./.	0/1:0,11:30:11:1.00:2
chr5	140167636	rs111466259	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,27:28:53:0.509:2
chr5	140168017	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,4:29:85:0.047:2	./.	./.	./.	./.	./.	./.
chr5	140168070	rs2240696	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:33:59:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,11:32:11:1.00:2	0/1:62,29:32:91:0.319:2	0/1:34,28:30:62:0.452:2	0/1:59,43:32:102:0.422:2	./.	0/1:0,47:31:47:1.00:2	0/1:0,73:33:73:1.00:2	./.	0/1:0,25:32:25:1.00:2
chr5	140168088	rs13176401	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,32:31:77:0.416:2	./.	./.
chr5	140168151	rs2240695	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:29:81:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,7:30:7:1.00:2	0/1:71,58:29:129:0.450:2	0/1:62,37:29:99:0.374:2	0/1:74,65:29:139:0.468:2	./.	0/1:3,115:29:118:0.975:2	0/1:0,100:30:100:1.00:2	./.	0/1:0,93:29:93:1.00:2
chr5	140174622	rs9686540	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:30:85:1.00:2	0/1:0,46:32:46:1.00:2	0/1:1,16:30:17:0.941:2	0/1:45,47:29:92:0.511:2	0/1:33,28:30:61:0.459:2	0/1:42,39:29:81:0.481:2	./.	0/1:0,72:30:72:1.00:2	0/1:0,69:30:69:1.00:2	./.	0/1:0,48:30:48:1.00:2
chr5	140174865	rs11167600	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:32:35:1.00:2	0/1:2,35:30:37:0.946:2	0/1:0,4:34:4:1.00:2	0/1:30,19:32:49:0.388:2	0/1:16,27:31:43:0.628:2	0/1:39,40:30:79:0.506:2	./.	0/1:0,57:32:57:1.00:2	0/1:1,58:32:59:0.983:2	./.	0/1:0,49:31:49:1.00:2
chr5	140176082	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,5:29:14:0.357:2	./.	./.	./.	./.	./.	./.	./.
chr5	140176148	rs201395161	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:32:8:0.625:2	./.	./.	./.	./.	./.	./.	./.
chr5	140176592	rs149822412	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,19:32:28:0.679:2	./.	./.	./.	./.	./.	./.
chr5	140181147	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:31:54:0.074:2	./.	./.	./.
chr5	140181160	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:33:46:0.087:2	./.	./.	./.
chr5	140181648	rs3733709	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,22:32:47:0.468:2	./.	./.	./.	./.	./.
chr5	140181734	rs3733708	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,58:33:59:0.983:2	0/1:1,48:32:49:0.980:2	0/1:0,7:33:7:1.00:2	0/1:42,41:32:83:0.494:2	0/1:34,26:32:60:0.433:2	0/1:38,38:32:76:0.500:2	./.	0/1:0,67:32:67:1.00:2	0/1:0,75:34:75:1.00:2	./.	0/1:0,83:32:83:1.00:2
chr5	140181892	rs3733707	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,93:32:93:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,25:32:25:1.00:2	0/1:59,52:32:111:0.468:2	0/1:51,57:32:108:0.528:2	0/1:68,60:32:128:0.469:2	./.	0/1:0,118:32:118:1.00:2	0/1:0,107:33:107:1.00:2	./.	0/1:0,93:32:93:1.00:2
chr5	140182101	rs7701755	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,125:30:125:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,10:30:10:1.00:2	0/1:51,61:30:112:0.545:2	0/1:30,36:30:66:0.545:2	0/1:52,79:30:131:0.603:2	./.	0/1:0,93:30:94:1.00:2	0/1:1,95:31:96:0.990:2	./.	0/1:0,50:31:50:1.00:2
chr5	140183058	rs2240694	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,98:29:99:0.990:2	0/1:0,58:30:58:1.00:2	0/1:0,8:29:8:1.00:2	0/1:95,49:28:145:0.340:2	0/1:90,50:27:140:0.357:2	0/1:78,70:28:148:0.473:2	./.	0/1:1,112:28:114:0.991:2	0/1:0,91:28:91:1.00:2	./.	0/1:2,118:28:120:0.983:2
chr5	140186937	rs11167605	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:4,9:31:13:0.692:2	0/1:5,5:31:10:0.500:2	0/1:0,4:32:4:1.00:2	./.	0/1:9,5:31:14:0.357:2	./.	./.	0/1:4,7:29:11:0.636:2	0/1:0,11:32:11:1.00:2	./.	0/1:3,4:32:7:0.571:2
chr5	140186988	rs3822350	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2
chr5	140187048	rs3822349	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:32:24:1.00:2	0/1:1,14:31:15:0.933:2	0/1:0,2:29:2:1.00:2	0/1:21,12:31:33:0.364:2	0/1:18,7:33:25:0.280:2	0/1:16,7:30:23:0.304:2	0/1:29,3:33:32:0.094:2	0/1:2,19:30:21:0.905:2	0/1:0,13:31:13:1.00:2	./.	0/1:0,14:32:14:1.00:2
chr5	140187102	rs3822347	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,44:33:49:0.898:2	0/1:2,18:33:20:0.900:2	0/1:0,6:32:6:1.00:2	0/1:35,22:32:57:0.386:2	0/1:30,27:33:57:0.474:2	0/1:38,16:32:54:0.296:2	0/1:47,5:33:52:0.096:2	0/1:1,63:32:64:0.984:2	0/1:0,33:32:33:1.00:2	./.	0/1:2,43:31:45:0.956:2
chr5	140187156	rs368621145	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:28:82:0.049:2	./.
chr5	140187243	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,5:30:94:0.053:2	./.	./.	./.
chr5	140187246	rs112291126	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,5:29:94:0.053:2	./.	./.	./.
chr5	140187322	rs3822346	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,45:32:47:0.957:2	0/1:0,23:31:23:1.00:2	0/1:0,6:31:6:1.00:2	0/1:32,23:30:55:0.418:2	0/1:16,19:31:35:0.543:2	0/1:35,21:30:56:0.375:2	./.	0/1:0,39:31:39:1.00:2	0/1:0,42:31:42:1.00:2	./.	0/1:0,51:31:51:1.00:2
chr5	140188383	rs2337987	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,8:31:8:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	0/1:0,8:31:8:1.00:2	0/1:0,7:28:7:1.00:2	./.	./.
chr5	140188401	rs2879086	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,6:32:6:1.00:2	0/1:0,4:29:4:1.00:2	./.	./.	./.	./.	./.	0/1:0,8:31:8:1.00:2	0/1:0,4:31:4:1.00:2	./.	./.
chr5	140188575	rs2879087	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:29:27:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,11:30:11:1.00:2	0/1:10,22:30:32:0.688:2	0/1:2,15:28:17:0.882:2	0/1:13,21:30:34:0.618:2	./.	0/1:0,56:30:56:1.00:2	0/1:0,30:29:30:1.00:2	./.	0/1:0,20:30:20:1.00:2
chr5	140188709	rs147674000	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,12:32:23:0.522:2	./.
chr5	140201420	rs11958868	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:29:38:1.00:2	0/1:1,15:29:16:0.938:2	0/1:0,6:30:6:1.00:2	0/1:18,12:29:30:0.400:2	0/1:22,25:27:47:0.532:2	0/1:26,21:30:47:0.447:2	./.	0/1:0,66:29:66:1.00:2	0/1:0,50:30:50:1.00:2	./.	0/1:0,52:27:52:1.00:2
chr5	140202696	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,6:32:46:0.130:2	./.	./.
chr5	140203432	rs4141841	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:31:37:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,14:28:14:1.00:2	0/1:48,33:29:81:0.407:2	0/1:14,19:30:33:0.576:2	0/1:27,22:29:49:0.449:2	./.	0/1:0,65:30:65:1.00:2	0/1:0,47:30:47:1.00:2	./.	0/1:2,27:31:29:0.931:2
chr5	140207965	rs150162226	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,4:28:51:0.078:2	./.	0/1:6,3:30:9:0.333:2	0/1:89,7:30:96:0.073:2	0/1:68,7:27:75:0.093:2	0/1:75,7:30:82:0.085:2	./.	0/1:80,15:30:95:0.158:2	0/1:62,9:32:71:0.127:2	./.	0/1:53,7:30:60:0.117:2
chr5	140208909	rs664837	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,10:25:183:0.055:2	./.	./.
chr5	140209290	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2
chr5	140209293	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2
chr5	140209392	rs146736705	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,7:33:16:0.438:2	./.
chr5	140209467	rs7710794	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:32:58:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,13:32:13:1.00:2	0/1:41,33:33:74:0.446:2	0/1:19,27:31:46:0.587:2	0/1:42,13:32:55:0.236:2	./.	0/1:0,70:31:70:1.00:2	0/1:0,44:33:44:1.00:2	./.	0/1:0,24:32:24:1.00:2
chr5	140209500	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,4:30:78:0.051:2	./.	./.	./.	./.	./.	./.	./.
chr5	140214231	rs17844305	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,24:32:56:0.429:2	./.	0/1:24,17:32:41:0.415:2	./.	./.	./.
chr5	140214361	rs17844307	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:167,15:32:182:0.082:2	./.	./.	./.	./.	0/1:187,4:33:191:0.021:2	./.
chr5	140214381	rs10067182	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,160:32:161:0.994:2	0/1:1,89:32:90:0.989:2	0/1:0,16:32:16:1.00:2	0/1:116,60:32:176:0.341:2	0/1:117,55:32:172:0.320:2	0/1:137,58:31:195:0.297:2	./.	0/1:2,150:32:152:0.987:2	0/1:1,169:33:170:0.994:2	./.	0/1:0,148:32:148:1.00:2
chr5	140215022	rs150063888	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,5:30:179:0.028:2	./.	./.	./.	0/1:174,5:32:179:0.028:2	./.
chr5	140215721	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:33:87:0.046:2	./.
chr5	140216042	rs61730623	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,84:31:179:0.475:2	./.	./.	./.	./.	./.	./.	./.
chr5	140221047	rs148828100	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,3:32:37:0.081:2	./.	./.	./.	./.	0/1:30,4:32:34:0.118:2	./.	./.	0/1:27,6:32:33:0.182:2	./.	0/1:27,3:32:30:0.100:2
chr5	140221065	rs62384462	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,5:32:30:0.167:2	0/1:7,3:32:10:0.300:2	./.	./.	./.	0/1:18,5:28:23:0.217:2	./.	0/1:19,5:32:24:0.208:2	0/1:20,6:30:26:0.231:2	./.	0/1:20,4:31:24:0.167:2
chr5	140221071	rs62384463	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:24,3:31:27:0.111:2	./.	./.	./.	./.	./.	./.	0/1:16,7:32:23:0.304:2	0/1:17,7:31:24:0.292:2	./.	0/1:16,4:28:20:0.200:2
chr5	140221098	rs62624460	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:22,8:32:30:0.267:2	0/1:6,4:33:10:0.400:2	./.	./.	./.	./.	./.	0/1:17,4:32:21:0.190:2	./.	./.	./.
chr5	140221139	rs3756331	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:30:39:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,5:30:5:1.00:2	0/1:15,23:30:39:0.605:2	0/1:9,12:30:21:0.571:2	0/1:20,10:28:30:0.333:2	0/1:19,5:30:24:0.208:2	0/1:2,34:30:36:0.944:2	0/1:0,32:31:32:1.00:2	0/1:20,5:30:25:0.200:2	0/1:0,23:31:23:1.00:2
chr5	140221195	rs199713478	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,10:28:61:0.164:2	0/1:32,4:29:36:0.111:2	./.	0/1:51,8:30:59:0.136:2	0/1:50,4:29:55:0.074:2	0/1:53,8:27:61:0.131:2	./.	0/1:48,10:28:58:0.172:2	0/1:43,10:28:53:0.189:2	0/1:42,4:31:46:0.087:2	0/1:38,10:29:48:0.208:2
chr5	140222157	rs3733705	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,68:28:69:0.986:2	0/1:0,49:28:49:1.00:2	0/1:0,28:27:28:1.00:2	./.	0/1:81,62:27:143:0.434:2	./.	./.	0/1:2,86:27:88:0.977:2	0/1:1,123:28:124:0.992:2	./.	0/1:0,50:25:50:1.00:2
chr5	140222641	rs6580012	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	140222738	rs62622825	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,33:32:33:1.00:2	0/1:1,20:31:21:0.952:2	0/1:7,5:32:12:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	140223037	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:30:79:0.051:2	./.	./.	./.	./.	./.
chr5	140223049	rs377605294	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:30:78:0.051:2	./.	./.	./.	./.	./.
chr5	140228164	rs251353	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,78:31:137:0.569:2	0/1:0,94:31:94:1.00:2	./.	./.	0/1:55,40:31:95:0.421:2	0/1:0,127:32:127:1.00:2	./.
chr5	140228182	rs151001396	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,22:30:69:0.319:2	./.	./.
chr5	140228188	rs144574743	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,11:30:57:0.193:2	./.	./.
chr5	140228366	rs146253628	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,34:31:72:0.472:2	./.
chr5	140228410	rs17844322	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,26:31:123:0.211:2	./.	0/1:100,5:33:105:0.048:2	./.	./.	./.	./.
chr5	140228413	rs17844323	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,24:30:122:0.197:2	./.	0/1:103,4:30:107:0.037:2	./.	./.	./.	./.
chr5	140228473	rs364063	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:108,45:27:153:0.294:2	0/1:69,29:27:98:0.296:2	0/1:46,5:27:51:0.098:2	0/1:176,13:29:189:0.069:2	0/1:172,20:26:192:0.104:2	0/1:171,25:26:197:0.128:2	./.	0/1:134,62:27:196:0.316:2	0/1:117,74:27:191:0.387:2	./.	0/1:135,55:26:190:0.289:2
chr5	140229086	rs251354	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,73:33:189:0.386:2	0/1:108,87:32:195:0.446:2	0/1:1,175:32:176:0.994:2	0/1:2,190:32:192:0.990:2	./.	0/1:144,50:34:194:0.258:2	0/1:0,184:33:184:1.00:2	./.
chr5	140229235	rs140138948	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,72:31:143:0.503:2	./.	./.	./.	./.	./.	./.
chr5	140229368	rs251355	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,47:27:82:0.573:2	0/1:1,66:28:67:0.985:2	./.	./.	0/1:57,46:28:103:0.447:2	0/1:3,87:28:90:0.967:2	./.
chr5	140229526	rs251356	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,30:30:88:0.341:2	0/1:38,19:30:57:0.333:2	0/1:0,36:29:37:1.00:2	0/1:0,21:31:22:1.00:2	./.	0/1:45,24:32:69:0.348:2	0/1:2,51:30:53:0.962:2	./.
chr5	140229607	rs201141536	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,4:29:63:0.063:2	./.	./.	0/1:13,8:27:21:0.381:2	./.	0/1:41,4:29:45:0.089:2	./.	./.
chr5	140230370	rs369636	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,75:32:185:0.405:2	0/1:114,68:31:183:0.374:2	0/1:2,79:30:81:0.975:2	0/1:4,152:31:156:0.974:2	./.	0/1:114,64:32:178:0.360:2	0/1:0,134:31:134:1.00:2	./.
chr5	140230371	rs369639	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,75:30:185:0.405:2	0/1:111,69:29:180:0.383:2	0/1:2,79:29:81:0.975:2	0/1:4,150:30:155:0.974:2	./.	0/1:116,64:30:180:0.356:2	0/1:0,134:30:134:1.00:2	./.
chr5	140231237	rs628890	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,42:32:42:1.00:2	0/1:0,40:32:40:1.00:2	./.	0/1:0,63:32:63:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,95:33:95:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,74:32:75:1.00:2
chr5	140231252	rs628871	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,20:30:52:0.385:2	./.	./.	./.	./.	./.	./.
chr5	140231983	rs150537989	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,11:31:18:0.611:2	./.	./.	0/1:7,6:30:13:0.462:2	./.	./.	./.	./.
chr5	140232173	rs72800980	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,26:30:53:0.491:2	./.	./.	0/1:19,22:30:41:0.537:2	./.	./.	./.	0/1:3,32:30:35:0.914:2
chr5	140232346	rs17119246	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,96:31:189:0.508:2	0/1:116,4:32:120:0.033:2	./.	0/1:58,61:31:119:0.513:2	./.	./.	./.	./.
chr5	140232950	rs577069	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,14:32:34:0.412:2	0/1:0,21:32:21:1.00:2	./.	./.	0/1:30,27:33:57:0.474:2	0/1:0,24:31:24:1.00:2	./.
chr5	140233043	rs17119248	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,59:32:145:0.407:2	./.	./.	0/1:40,41:33:81:0.506:2	./.	./.	./.	./.
chr5	140233113	rs75012399	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,16:30:44:0.364:2	./.	./.	./.	./.	./.	./.
chr5	140233725	rs251357	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.
chr5	140235812	rs149352769	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:32:29:0.138:2	./.	./.	./.	./.
chr5	140236950	rs251362	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,4:34:21:0.190:2	./.	./.	./.	0/1:19,23:30:42:0.548:2	0/1:0,22:32:22:1.00:2	./.	./.	0/1:11,17:32:28:0.607:2	0/1:0,40:31:40:1.00:2	./.
chr5	140237109	rs251363	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,6:30:19:0.316:2	0/1:77,59:30:136:0.434:2	0/1:35,18:31:53:0.340:2	0/1:0,28:29:28:1.00:2	0/1:0,11:31:11:1.00:2	./.	0/1:51,25:31:76:0.329:2	0/1:0,56:30:56:1.00:2	./.
chr5	140237158	rs142356019	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,19:30:60:0.322:2	./.	./.	./.	./.	./.	./.	./.
chr5	140237387	rs251364	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,43:31:104:0.413:2	0/1:70,36:31:106:0.340:2	0/1:1,26:30:27:0.963:2	0/1:0,52:32:52:1.00:2	./.	0/1:33,28:32:61:0.459:2	0/1:0,56:31:56:1.00:2	./.
chr5	140237548	rs630162	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,20:31:37:0.541:2	0/1:19,14:32:33:0.424:2	0/1:0,17:30:17:1.00:2	0/1:0,10:29:10:1.00:2	./.	0/1:16,15:33:31:0.484:2	0/1:0,27:32:27:1.00:2	./.
chr5	140238124	rs62384480	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,19:29:19:1.00:2	./.	./.	./.	./.	./.
chr5	140249046	rs372195509	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,4:31:100:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr5	140249855	rs139719896	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,78:32:186:0.419:2	./.	./.	./.	./.
chr5	140249884	rs62622798	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,102:30:189:0.540:2	./.	./.	./.	./.	./.
chr5	140250252	rs251372	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	./.	./.	./.	./.
chr5	140250701	rs200344692	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,22:30:31:0.710:2	./.	./.	./.
chr5	140255222	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,3:33:17:0.176:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	140255271	rs17844351	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,6:30:20:0.300:2	./.	./.	./.	./.	./.	0/1:22,4:28:26:0.154:2	./.	0/1:8,10:30:18:0.556:2	./.
chr5	140255366	rs187904552	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:31:11:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	140255792	rs251377	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	0/1:33,20:30:53:0.377:2	0/1:38,35:31:73:0.479:2	./.	./.	0/1:40,42:32:82:0.512:2	0/1:0,34:32:34:1.00:2	./.
chr5	140255953	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,20:31:32:0.625:2	./.
chr5	140256870	rs76220347	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,73:32:183:0.399:2	./.	./.	./.	./.	./.	./.	./.
chr5	140256920	rs115718636	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,101:33:145:0.697:2	./.	./.	0/1:63,100:33:163:0.613:2	./.	./.	./.	./.
chr5	140262045	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,6:33:36:0.167:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	140262067	rs200256955	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:21,6:30:27:0.222:2	./.	./.	0/1:47,4:29:51:0.078:2	./.	./.	./.	0/1:33,6:29:39:0.154:2	0/1:24,5:31:29:0.172:2	./.	./.
chr5	140262492	rs11744560	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:27,28:33:55:0.509:2	0/1:15,9:34:24:0.375:2	./.	0/1:26,18:32:44:0.409:2	./.	0/1:27,23:30:50:0.460:2	0/1:32,23:33:55:0.418:2	0/1:20,33:33:53:0.623:2	./.	./.	0/1:40,27:33:67:0.403:2
chr5	140263059	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,4:31:119:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr5	140263136	rs375469569	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,12:26:30:0.400:2	./.	./.	./.	./.	./.	./.	./.
chr5	140263290	rs251380	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,10:27:36:0.286:2	0/1:35,13:30:48:0.271:2	0/1:4,7:29:11:0.636:2	0/1:59,50:30:109:0.459:2	0/1:61,47:29:108:0.435:2	0/1:0,78:29:78:1.00:2	0/1:1,62:30:63:0.984:2	0/1:76,38:30:114:0.333:2	0/1:36,40:31:76:0.526:2	0/1:0,54:30:54:1.00:2	0/1:24,13:29:37:0.351:2
chr5	140307002	rs74597681	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,63:31:111:0.568:2	./.	./.	./.	./.
chr5	140307284	rs155361	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,48:31:48:1.00:2	0/1:1,29:32:30:0.967:2	./.	0/1:0,46:30:46:1.00:2	0/1:33,35:31:68:0.515:2	0/1:38,37:31:75:0.493:2	0/1:0,59:30:59:1.00:2	0/1:0,67:31:67:1.00:2	0/1:22,31:31:53:0.585:2	./.	0/1:0,45:31:45:1.00:2
chr5	140307746	rs155820	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,27:29:42:0.643:2	0/1:13,10:30:23:0.435:2	0/1:3,3:30:6:0.500:2	0/1:32,18:30:50:0.360:2	0/1:19,14:32:33:0.424:2	./.	./.	0/1:17,27:31:44:0.614:2	0/1:21,23:32:44:0.523:2	./.	0/1:21,12:29:33:0.364:2
chr5	140307969	rs246074	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:32:45:1.00:2	0/1:0,22:31:22:1.00:2	0/1:2,8:32:10:0.800:2	0/1:0,42:32:42:1.00:2	0/1:10,13:32:23:0.565:2	0/1:11,16:30:27:0.593:2	0/1:0,25:31:25:1.00:2	0/1:0,28:32:28:1.00:2	0/1:21,19:33:40:0.475:2	./.	0/1:0,39:32:39:1.00:2
chr5	140309016	rs155360	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,49:32:49:1.00:2	0/1:1,28:32:29:0.966:2	./.	0/1:0,53:31:53:1.00:2	0/1:19,18:31:37:0.486:2	0/1:28,17:31:45:0.378:2	0/1:0,31:31:31:1.00:2	0/1:0,35:31:35:1.00:2	0/1:35,23:33:58:0.397:2	./.	0/1:1,59:32:60:0.983:2
chr5	140309124	rs155821	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,19:31:36:0.528:2	0/1:8,3:33:11:0.273:2	./.	0/1:20,16:33:36:0.444:2	0/1:15,7:32:22:0.318:2	./.	./.	0/1:20,16:33:36:0.444:2	0/1:34,14:34:48:0.292:2	./.	0/1:43,23:33:66:0.348:2
chr5	140346468	rs155364	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,14:31:14:1.00:2	0/1:0,12:32:12:1.00:2	./.	0/1:0,22:32:22:1.00:2	0/1:13,6:30:19:0.316:2	0/1:12,8:32:20:0.400:2	0/1:1,8:32:9:0.889:2	0/1:0,28:31:28:1.00:2	0/1:15,14:33:29:0.483:2	./.	0/1:0,6:32:6:1.00:2
chr5	140346665	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,4:31:21:0.200:2	./.	./.	./.
chr5	140346712	rs155808	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,19:32:39:0.487:2	0/1:18,18:31:36:0.500:2	./.	0/1:45,39:32:84:0.464:2	0/1:42,35:31:77:0.455:2	./.	./.	0/1:45,30:32:75:0.400:2	0/1:34,39:33:73:0.534:2	./.	0/1:27,21:33:48:0.438:2
chr5	140346788	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:32:123:0.033:2	./.	./.	./.	./.	./.
chr5	140347053	rs155807	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,36:30:91:0.400:2	0/1:37,35:32:72:0.486:2	0/1:3,7:32:10:0.700:2	0/1:69,57:30:126:0.452:2	0/1:76,83:30:159:0.522:2	./.	./.	0/1:77,70:30:147:0.476:2	0/1:61,61:32:122:0.500:2	./.	0/1:48,42:31:90:0.467:2
chr5	140347398	rs12153295	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:24,14:30:38:0.368:2	0/1:8,6:31:14:0.429:2	./.	0/1:23,15:29:38:0.395:2	./.	0/1:23,26:29:49:0.531:2	0/1:36,18:30:54:0.333:2	0/1:39,35:29:74:0.473:2	./.	./.	0/1:22,19:30:41:0.463:2
chr5	140348335	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:32:115:0.035:2	./.
chr5	140389211	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,4:31:68:0.059:2	./.	./.	./.	./.	./.	./.
chr5	140432285	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:32:93:0.043:2	./.	./.	./.	./.	./.
chr5	140433038	rs2233594	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,48:31:103:0.466:2	./.
chr5	140433211	rs2233595	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,24:29:43:0.558:2	0/1:29,25:31:54:0.463:2	./.	./.
chr5	140433389	rs246679	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,64:33:143:0.451:2	./.
chr5	140475658	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,6:33:183:0.033:2	./.	./.	./.	./.
chr5	140475716	rs147704016	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,8:27:103:0.078:2	./.	./.
chr5	140475763	rs142417694	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,12:34:59:0.203:2	./.	./.	./.	./.	0/1:66,9:31:75:0.120:2	./.	0/1:49,9:32:58:0.155:2	./.	./.	0/1:36,4:33:40:0.100:2
chr5	140475820	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,3:33:35:0.086:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	140475902	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:29:82:0.049:2	./.	./.	./.
chr5	140475980	rs17844376	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,17:30:24:0.708:2	0/1:0,7:31:7:1.00:2	./.	0/1:10,4:26:14:0.286:2	0/1:6,21:31:27:0.778:2	./.	0/1:0,2:31:2:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,20:30:20:1.00:2	./.	0/1:5,11:32:16:0.688:2
chr5	140475988	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.
chr5	140476000	rs141231979	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.
chr5	140476487	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,4:32:12:0.333:2	0/1:5,3:28:8:0.375:2	./.
chr5	140476630	rs141291764	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,59:32:142:0.415:2	0/1:57,39:32:96:0.406:2	0/1:11,8:31:19:0.421:2	0/1:125,23:31:148:0.155:2	0/1:134,21:31:155:0.135:2	0/1:107,21:31:129:0.164:2	0/1:111,23:32:134:0.172:2	0/1:92,79:31:172:0.462:2	0/1:106,62:32:168:0.369:2	0/1:82,39:30:121:0.322:2	0/1:109,59:31:168:0.351:2
chr5	140476653	rs1047372	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:120,53:30:173:0.306:2	0/1:78,35:31:113:0.310:2	./.	./.	./.	0/1:134,43:30:177:0.243:2	0/1:137,40:30:177:0.226:2	0/1:135,56:30:191:0.293:2	./.	0/1:102,57:31:159:0.358:2	0/1:126,59:30:185:0.319:2
chr5	140476654	rs145066448	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:121,53:30:174:0.305:2	0/1:81,35:31:116:0.302:2	./.	./.	./.	0/1:136,43:31:179:0.240:2	0/1:138,40:30:178:0.225:2	0/1:135,56:30:191:0.293:2	./.	0/1:104,57:30:161:0.354:2	0/1:125,59:29:185:0.321:2
chr5	140480822	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:30:43:0.093:2	./.	./.	./.	./.
chr5	140480852	rs12515688	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,17:31:43:0.395:2	0/1:5,11:32:16:0.688:2	./.	./.	./.	0/1:22,19:30:41:0.463:2	0/1:29,18:30:47:0.383:2	0/1:14,19:30:33:0.576:2	./.	0/1:8,17:29:25:0.680:2	0/1:9,19:31:28:0.679:2
chr5	140481475	rs3733699	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,27:32:86:0.314:2	0/1:30,19:32:49:0.388:2	./.	./.	./.	0/1:58,53:31:111:0.477:2	0/1:49,43:31:92:0.467:2	0/1:69,49:30:118:0.415:2	./.	0/1:61,55:31:116:0.474:2	0/1:52,61:31:113:0.540:2
chr5	140481691	rs151234490	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,16:32:27:0.593:2	./.	./.	./.	./.
chr5	140481973	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	140482015	rs199864885	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	140482483	rs31848	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,90:31:132:0.682:2	0/1:32,42:32:74:0.568:2	0/1:7,7:30:14:0.500:2	0/1:116,40:31:156:0.256:2	0/1:107,38:31:145:0.262:2	0/1:123,31:31:154:0.201:2	0/1:98,46:31:144:0.319:2	0/1:88,80:31:168:0.476:2	0/1:65,95:32:160:0.594:2	0/1:58,74:31:132:0.561:2	0/1:85,82:31:167:0.491:2
chr5	140482506	rs202125784	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:168,16:32:184:0.087:2	0/1:93,11:30:105:0.106:2	./.	./.	./.	0/1:155,34:30:189:0.180:2	0/1:166,23:30:189:0.122:2	0/1:148,46:31:194:0.237:2	./.	0/1:147,39:30:186:0.210:2	0/1:155,35:30:190:0.184:2
chr5	140482507	rs200112540	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:167,16:31:183:0.087:2	0/1:96,11:31:107:0.103:2	./.	./.	./.	0/1:156,34:30:190:0.179:2	0/1:167,23:31:190:0.121:2	0/1:149,45:30:194:0.232:2	./.	0/1:145,39:30:184:0.212:2	0/1:155,35:29:190:0.184:2
chr5	140502177	rs3776100	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:39,25:32:64:0.391:2	0/1:37,16:32:53:0.302:2	0/1:9,5:31:14:0.357:2	./.	0/1:62,54:31:116:0.466:2	./.	./.	0/1:53,42:31:95:0.442:2	0/1:0,87:32:87:1.00:2	./.	0/1:48,37:32:85:0.435:2
chr5	140502343	rs3733698	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,44:33:81:0.543:2	0/1:36,25:32:61:0.410:2	./.	./.	./.	0/1:47,53:32:100:0.530:2	0/1:31,36:32:67:0.537:2	0/1:46,63:32:109:0.578:2	./.	0/1:35,62:33:97:0.639:2	0/1:39,53:31:93:0.576:2
chr5	140502344	rs3733697	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,44:32:82:0.543:2	0/1:37,25:32:62:0.403:2	./.	./.	./.	0/1:47,53:31:100:0.530:2	0/1:31,37:32:68:0.544:2	0/1:44,63:32:107:0.589:2	./.	0/1:35,62:32:97:0.639:2	0/1:40,53:31:93:0.570:2
chr5	140502960	rs372949962	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,3:31:28:0.107:2	./.	./.	./.	./.	0/1:39,5:30:44:0.114:2	./.	0/1:34,5:30:39:0.128:2	./.	./.	./.
chr5	140502997	.	A	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,7:31:40:0.175:2	./.	./.	./.	./.	./.	0/1:36,9:29:45:0.200:2	0/1:34,5:33:39:0.128:2	./.	0/1:9,4:31:13:0.308:2
chr5	140503002	.	C	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,7:32:42:0.171:2	./.	./.	./.	./.	./.	0/1:35,10:31:45:0.222:2	0/1:34,5:33:39:0.128:2	./.	0/1:10,6:33:16:0.375:2
chr5	140503078	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,5:26:16:0.313:2
chr5	140503099	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,5:32:75:0.067:2	0/1:30,5:30:35:0.143:2	./.	./.	./.	0/1:55,10:31:65:0.154:2	0/1:15,4:30:19:0.211:2	./.	./.	./.	./.
chr5	140503237	rs246669	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:31:15:0.533:2	0/1:6,5:31:11:0.455:2	./.	./.	./.	0/1:9,4:30:13:0.308:2	./.	./.	./.	0/1:7,4:31:11:0.364:2	0/1:1,4:25:5:0.800:2
chr5	140503309	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	140516407	rs17844422	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,18:29:55:0.327:2	./.	./.	./.	./.
chr5	140516496	rs370535401	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:32:140:0.029:2	./.	./.	./.	./.	./.
chr5	140516795	rs246726	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:31:6:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr5	140516805	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.
chr5	140516967	rs200649216	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2
chr5	140517174	rs400562	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,6:31:17:0.353:2	0/1:8,6:31:14:0.429:2	0/1:0,5:31:5:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,10:32:10:1.00:2	0/1:13,5:31:18:0.278:2	./.	0/1:11,3:32:14:0.214:2	0/1:0,7:30:7:1.00:2	0/1:5,4:32:9:0.444:2	0/1:6,7:29:13:0.538:2
chr5	140517431	rs246725	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,84:31:182:0.462:2	./.
chr5	140517690	rs79503440	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,12:32:37:0.324:2	./.
chr5	140530529	rs3776096	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:25,29:31:54:0.537:2	0/1:14,18:31:32:0.563:2	./.	./.	0/1:18,12:31:30:0.400:2	./.	./.	0/1:31,22:30:53:0.415:2	0/1:1,61:32:62:0.984:2	./.	0/1:29,36:31:65:0.554:2
chr5	140530852	rs246708	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,51:32:123:0.415:2	0/1:50,39:33:89:0.438:2	./.	./.	./.	0/1:95,88:33:183:0.481:2	0/1:80,96:33:176:0.545:2	0/1:93,85:33:178:0.478:2	./.	0/1:76,73:33:149:0.490:2	0/1:85,74:31:160:0.465:2
chr5	140531060	rs151211308	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,24:31:57:0.421:2	./.
chr5	140531175	rs246707	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:31:35:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,40:32:41:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,30:30:30:1.00:2
chr5	140531215	rs246706	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,20:33:36:0.556:2	./.
chr5	140531248	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,4:32:30:0.133:2	./.	./.	./.	./.
chr5	140531374	rs17844437	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,35:28:90:0.389:2	0/1:30,13:30:43:0.302:2	0/1:24,18:30:42:0.429:2	./.	./.	./.
chr5	140531408	rs148897759	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,3:32:37:0.081:2	./.	./.	./.
chr5	140531426	rs146552509	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,3:30:28:0.107:2	./.	./.	./.
chr5	140531466	rs145057964	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,10:32:24:0.417:2	./.	./.	./.	./.	./.	./.	./.
chr5	140531592	rs55834559	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.
chr5	140531746	rs246703	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:31:2:1.00:2	0/1:0,8:32:8:1.00:2	./.	./.	0/1:0,5:32:5:1.00:2	0/1:2,4:33:6:0.667:2	./.	0/1:0,4:31:4:1.00:2	0/1:0,4:33:4:1.00:2	./.	0/1:0,2:30:2:1.00:2
chr5	140532165	rs17844444	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,39:32:82:0.476:2	0/1:35,26:31:62:0.426:2	./.	./.	./.	0/1:43,44:31:88:0.506:2	0/1:40,38:31:78:0.487:2	0/1:37,44:31:81:0.543:2	./.	./.	0/1:61,68:31:129:0.527:2
chr5	140532409	rs17629216	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,15:31:32:0.469:2	./.	./.	./.	./.	./.	./.	./.
chr5	140532488	rs10074020	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,19:31:50:0.380:2	0/1:11,5:27:16:0.313:2	./.	0/1:3,37:32:40:0.925:2	0/1:21,19:30:40:0.475:2	./.	./.	0/1:30,9:32:39:0.231:2	0/1:4,36:31:40:0.900:2	./.	0/1:40,25:30:65:0.385:2
chr5	140532663	rs193256412	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,99:31:188:0.529:2	./.	./.	./.	./.	./.
chr5	140552558	rs17096945	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,45:32:75:0.600:2	0/1:25,21:33:46:0.457:2	./.	./.	./.	0/1:26,32:32:58:0.552:2	0/1:32,20:33:52:0.385:2	0/1:33,33:32:66:0.500:2	./.	./.	0/1:43,35:33:78:0.449:2
chr5	140552585	rs28470552	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,18:30:36:0.500:2	./.
chr5	140552774	rs17286891	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,10:30:24:0.417:2	0/1:11,6:30:17:0.353:2	0/1:8,4:31:12:0.333:2	./.	./.	./.
chr5	140552942	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:29:99:0.040:2	./.
chr5	140552975	rs17096946	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,49:31:107:0.458:2	./.
chr5	140553017	rs149003370	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,70:30:127:0.551:2	./.	./.	./.
chr5	140553581	rs2910313	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,23:32:23:1.00:2	0/1:3,3:24:6:0.500:2	0/1:30,20:32:50:0.400:2	0/1:25,20:31:45:0.444:2	0/1:31,26:32:57:0.456:2	0/1:21,22:33:43:0.512:2	0/1:1,44:33:45:0.978:2	0/1:29,18:32:47:0.383:2	0/1:18,21:32:39:0.538:2	0/1:1,56:32:57:0.982:2
chr5	140553655	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:33:111:0.036:2	./.
chr5	140553664	rs3733695	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,40:31:82:0.488:2	0/1:34,21:32:55:0.382:2	./.	./.	./.	0/1:61,59:31:120:0.492:2	0/1:51,52:30:103:0.505:2	0/1:61,74:31:135:0.548:2	./.	./.	0/1:69,57:32:126:0.452:2
chr5	140553784	rs7702701	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,22:27:51:0.431:2	./.
chr5	140553856	rs2907330	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,57:31:59:0.966:2	0/1:1,33:32:34:0.971:2	0/1:8,3:32:11:0.273:2	0/1:50,51:32:101:0.505:2	0/1:49,45:31:94:0.479:2	0/1:61,67:31:128:0.523:2	0/1:26,42:32:68:0.618:2	0/1:0,112:31:112:1.00:2	0/1:35,40:33:75:0.533:2	0/1:23,31:32:54:0.574:2	0/1:0,62:32:62:1.00:2
chr5	140553917	rs17844455	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,38:31:71:0.535:2	0/1:25,20:31:45:0.444:2	./.	./.	./.	0/1:38,63:30:101:0.624:2	0/1:39,38:30:77:0.494:2	0/1:65,45:30:110:0.409:2	./.	./.	0/1:26,23:30:50:0.469:2
chr5	140553919	rs17844456	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,38:30:70:0.543:2	0/1:25,20:30:45:0.444:2	./.	./.	./.	0/1:38,64:30:102:0.627:2	0/1:38,38:30:76:0.500:2	0/1:66,45:30:111:0.405:2	./.	./.	0/1:25,25:29:50:0.500:2
chr5	140554006	rs2907329	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:29:23:1.00:2	0/1:1,26:30:28:0.963:2	0/1:0,2:32:2:1.00:2	0/1:13,16:31:29:0.552:2	0/1:12,5:31:17:0.294:2	0/1:15,21:30:36:0.583:2	0/1:9,12:32:21:0.571:2	0/1:0,34:31:34:1.00:2	0/1:12,4:32:16:0.250:2	0/1:15,10:31:25:0.400:2	0/1:0,15:33:15:1.00:2
chr5	140554105	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.
chr5	140554330	rs1811238	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:31:10:0.300:2	./.
chr5	140554481	rs1811237	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:11,10:31:21:0.476:2	0/1:4,5:30:9:0.556:2	./.	./.	0/1:21,10:30:31:0.323:2	./.	./.	0/1:16,17:30:33:0.515:2	0/1:22,27:31:49:0.551:2	0/1:35,18:29:53:0.340:2	0/1:3,10:30:13:0.769:2
chr5	140554484	rs1811236	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,18:29:52:0.346:2	./.
chr5	140554562	rs2910314	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,6:32:32:0.188:2	./.	./.	./.	./.	./.	./.	./.
chr5	140554606	rs11741863	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:16,19:33:35:0.543:2	0/1:8,7:32:15:0.467:2	0/1:6,5:32:11:0.455:2	./.	0/1:23,10:32:33:0.303:2	./.	./.	0/1:16,12:32:28:0.429:2	0/1:29,8:32:37:0.216:2	./.	0/1:14,15:32:29:0.517:2
chr5	140554808	rs6892507	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,89:32:90:0.989:2	0/1:0,71:32:71:1.00:2	0/1:15,10:31:25:0.400:2	./.	0/1:120,23:31:143:0.161:2	0/1:148,48:31:196:0.245:2	0/1:34,52:32:86:0.605:2	0/1:0,96:31:96:1.00:2	0/1:141,50:33:191:0.262:2	0/1:150,39:32:189:0.206:2	0/1:0,128:32:128:1.00:2
chr5	140555182	rs77126668	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,39:31:180:0.217:2	./.
chr5	140555616	rs191698001	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,3:31:26:0.115:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	140557779	rs202152706	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:142,42:29:184:0.228:2	0/1:115,32:29:147:0.218:2	./.	./.	./.	0/1:174,23:30:197:0.117:2	0/1:102,40:29:142:0.282:2	0/1:113,46:29:159:0.289:2	./.	./.	0/1:139,53:29:192:0.276:2
chr5	140558212	rs2950845	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:155,38:30:193:0.197:2	./.	./.	./.	./.	./.	./.	./.
chr5	140558326	rs2910317	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,104:28:108:0.972:2	0/1:4,58:29:62:0.935:2	./.	./.	0/1:184,11:30:195:0.056:2	0/1:154,43:28:197:0.218:2	0/1:99,96:29:195:0.492:2	0/1:2,159:29:161:0.988:2	0/1:178,11:31:189:0.058:2	0/1:152,44:29:196:0.224:2	0/1:3,116:29:119:0.975:2
chr5	140558345	rs2950844	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:126,45:34:171:0.263:2	./.	./.	./.	./.	./.	./.	./.
chr5	140558528	rs3733694	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,28:32:73:0.384:2	0/1:28,22:32:50:0.440:2	./.	./.	./.	0/1:73,16:32:89:0.180:2	0/1:16,12:32:28:0.429:2	0/1:23,16:32:39:0.410:2	./.	./.	0/1:45,35:33:80:0.438:2
chr5	140558580	rs7700833	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,46:27:179:0.257:2	./.
chr5	140558628	rs62378901	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,98:31:191:0.513:2	./.	./.	./.	./.	./.
chr5	140559029	rs139165988	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,22:28:108:0.204:2	./.
chr5	140559058	rs17844495	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,14:32:46:0.304:2	0/1:22,11:32:33:0.333:2	./.	./.	./.	0/1:131,20:31:151:0.132:2	0/1:11,14:32:25:0.560:2	0/1:50,9:32:59:0.153:2	./.	./.	0/1:22,14:33:36:0.389:2
chr5	140559103	rs17844497	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,16:30:53:0.302:2	0/1:25,10:31:35:0.286:2	./.	./.	./.	0/1:141,15:31:156:0.096:2	0/1:18,7:32:25:0.280:2	0/1:46,5:31:51:0.098:2	./.	./.	0/1:20,9:32:29:0.310:2
chr5	140559196	rs146788088	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,5:31:144:0.035:2	0/1:42,4:32:46:0.087:2	0/1:38,3:33:41:0.073:2	./.	./.	./.
chr5	140559320	rs17844498	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:32:5:1.00:2	0/1:1,3:33:4:0.750:2	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.
chr5	140559350	rs111768595	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.
chr5	140559550	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	./.
chr5	140559596	rs2697541	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:24:5:1.00:2	0/1:0,3:28:3:1.00:2	./.	./.	0/1:0,4:28:4:1.00:2	0/1:0,11:27:11:1.00:2	0/1:0,2:28:2:1.00:2	0/1:0,4:25:4:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,5:28:5:1.00:2	./.
chr5	140559679	rs17844507	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,14:27:28:0.500:2	./.	./.	./.	./.	0/1:20,12:28:32:0.375:2	0/1:14,10:29:24:0.417:2	0/1:18,22:27:40:0.550:2	./.	./.	0/1:6,5:26:11:0.455:2
chr5	140559748	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:30:55:0.073:2	./.	./.	./.	./.	./.
chr5	140559849	rs17096961	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,28:31:72:0.389:2	0/1:33,17:31:50:0.340:2	./.	./.	./.	0/1:37,34:30:71:0.479:2	0/1:48,41:31:89:0.461:2	0/1:42,48:30:90:0.533:2	./.	./.	0/1:36,39:30:75:0.520:2
chr5	140559914	rs2740583	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,7:34:15:0.467:2	./.	0/1:63,35:32:98:0.357:2	0/1:67,51:32:118:0.432:2	./.	./.	0/1:71,63:34:134:0.470:2	0/1:55,51:32:106:0.481:2	./.
chr5	140562739	rs61743469	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	0/1:12,16:32:28:0.571:2	0/1:20,15:34:35:0.429:2	./.	0/1:29,16:32:45:0.356:2
chr5	140563173	rs28664170	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,36:31:82:0.439:2	0/1:14,27:31:41:0.659:2	./.	./.	./.	0/1:58,39:30:97:0.402:2	0/1:53,54:30:107:0.505:2	0/1:63,79:31:142:0.556:2	./.	./.	0/1:57,43:32:100:0.430:2
chr5	140563550	rs56237941	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,5:28:62:0.081:2	./.	./.	./.	./.	./.
chr5	140563574	rs2697534	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,4:33:33:0.121:2	0/1:26,8:32:34:0.235:2	0/1:73,5:33:78:0.064:2	0/1:11,4:32:15:0.267:2	./.	0/1:26,4:32:30:0.133:2	./.	./.
chr5	140563579	rs17844646	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:30,20:30:51:0.400:2	0/1:29,10:32:39:0.256:2	./.	./.	0/1:10,22:31:32:0.688:2	./.	./.	0/1:43,26:30:69:0.377:2	0/1:7,20:31:27:0.741:2	./.	0/1:22,7:29:29:0.241:2
chr5	140563586	rs61745655	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,21:30:25:0.840:2	./.
chr5	140563616	rs17844647	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,3:32:38:0.079:2	0/1:65,5:31:70:0.071:2	./.	./.	./.	./.	./.
chr5	140563656	rs17844648	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,16:30:42:0.381:2	0/1:9,14:31:23:0.609:2	./.	./.	./.	0/1:8,24:29:32:0.750:2	0/1:3,3:31:6:0.500:2	0/1:47,21:30:68:0.309:2	./.	./.	0/1:10,7:31:17:0.412:2
chr5	140563658	rs2697533	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:30:70:0.057:2	./.	./.	./.
chr5	140564048	rs17844664	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,6:33:11:0.545:2	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:33:3:1.00:2
chr5	140564088	rs13176519	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:32:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	140564214	rs61739446	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,5:32:19:0.278:2	0/1:5,4:29:9:0.444:2	./.	./.	./.	0/1:14,4:32:18:0.222:2	./.	0/1:4,7:33:11:0.636:2	./.	./.	0/1:11,4:26:15:0.267:2
chr5	140564263	rs17844666	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:8,13:31:21:0.619:2	0/1:5,7:31:12:0.583:2	./.	./.	0/1:7,4:28:11:0.364:2	./.	./.	0/1:2,5:30:7:0.714:2	0/1:9,10:32:19:0.526:2	./.	0/1:1,14:30:15:0.933:2
chr5	140564594	rs10060104	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,32:31:98:0.330:2	0/1:22,17:31:40:0.436:2	./.	./.	./.	0/1:59,33:29:92:0.359:2	0/1:38,16:29:54:0.296:2	0/1:71,39:29:110:0.355:2	./.	./.	0/1:68,56:31:124:0.452:2
chr5	140564661	rs10069559	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,8:34:36:0.222:2	0/1:14,16:33:30:0.533:2	./.	./.	./.	0/1:31,11:32:42:0.262:2	0/1:21,7:32:28:0.250:2	0/1:42,8:33:50:0.160:2	./.	./.	0/1:43,24:33:67:0.358:2
chr5	140564672	rs73273626	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,3:32:28:0.107:2	0/1:13,13:31:26:0.500:2	./.	./.	./.	0/1:25,8:31:33:0.242:2	0/1:18,6:30:24:0.250:2	0/1:33,5:29:38:0.132:2	./.	./.	0/1:38,21:32:59:0.356:2
chr5	140565083	rs2950846	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	./.	0/1:0,4:32:4:1.00:2	./.	0/1:1,2:31:3:0.667:2	./.	./.
chr5	140565110	rs2338529	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:29:7:0.571:2	./.	./.	./.	./.	0/1:2,10:31:12:0.833:2	./.	./.	./.	./.	0/1:2,6:31:8:0.750:2
chr5	140565168	rs2338530	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,5:32:5:1.00:2	./.	./.	0/1:1,2:32:3:0.667:2	0/1:0,2:33:2:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,2:32:2:1.00:2	./.	0/1:0,4:34:4:1.00:2	0/1:0,5:28:5:1.00:2	0/1:0,5:31:5:1.00:2
chr5	140566952	rs998793	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,39:32:133:0.293:2	./.
chr5	140567223	rs376736236	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,15:29:184:0.082:2	./.	./.	./.	./.	./.
chr5	140567264	rs2740588	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:92,67:32:159:0.421:2	0/1:55,49:32:104:0.471:2	0/1:4,5:32:9:0.556:2	./.	0/1:59,60:31:119:0.504:2	./.	./.	0/1:78,78:31:156:0.500:2	0/1:100,86:32:186:0.462:2	./.	0/1:93,76:31:170:0.450:2
chr5	140567412	rs11167742	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,22:32:61:0.361:2	./.
chr5	140567445	rs17844512	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:34,38:30:72:0.528:2	0/1:28,24:29:52:0.462:2	0/1:6,5:25:11:0.455:2	./.	0/1:35,34:30:69:0.493:2	./.	./.	0/1:44,50:29:94:0.532:2	0/1:47,32:30:79:0.405:2	./.	0/1:66,46:29:112:0.411:2
chr5	140567608	rs11167743	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,6:31:17:0.353:2	0/1:44,33:30:77:0.429:2	0/1:51,43:32:94:0.457:2	0/1:39,41:31:80:0.513:2	0/1:61,46:31:107:0.430:2	./.	0/1:70,54:32:124:0.435:2	0/1:47,40:31:87:0.460:2	./.
chr5	140568026	rs2697531	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:18,27:29:45:0.600:2	0/1:14,9:30:23:0.391:2	./.	./.	0/1:25,12:30:37:0.324:2	./.	./.	0/1:19,23:31:42:0.548:2	0/1:20,29:30:49:0.592:2	./.	0/1:32,26:31:58:0.448:2
chr5	140568114	rs10037554	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,43:32:113:0.381:2	./.
chr5	140568131	rs10040383	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,36:29:101:0.356:2	0/1:29,28:29:57:0.491:2	./.	./.	./.	0/1:73,62:30:135:0.459:2	0/1:72,56:29:128:0.438:2	0/1:82,45:31:127:0.354:2	./.	0/1:70,43:30:113:0.381:2	0/1:78,77:30:155:0.497:2
chr5	140568167	rs2697530	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,26:31:78:0.333:2	0/1:27,19:32:46:0.413:2	./.	./.	./.	0/1:56,61:31:117:0.521:2	0/1:64,50:31:114:0.439:2	0/1:69,38:31:107:0.355:2	./.	./.	0/1:73,49:32:122:0.402:2
chr5	140568376	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,19:30:37:0.514:2
chr5	140568379	rs10064981	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,31:28:81:0.383:2	0/1:29,18:30:47:0.383:2	./.	./.	./.	0/1:60,34:28:94:0.362:2	0/1:36,20:27:56:0.357:2	0/1:49,32:28:81:0.395:2	./.	0/1:42,32:28:74:0.432:2	0/1:0,37:28:37:1.00:2
chr5	140568412	rs111971213	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,48:31:95:0.505:2	./.
chr5	140568458	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:31:43:0.093:2
chr5	140568796	rs2860540	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,5:25:6:0.833:2	./.	./.	./.	./.	./.	./.	./.
chr5	140568869	rs200567507	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:29:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	140568998	rs1811235	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:8,4:32:12:0.333:2	./.	./.	./.	./.	./.	./.	0/1:10,3:31:13:0.231:2	./.	./.
chr5	140572456	rs149648241	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,55:30:174:0.316:2	./.	./.	./.	./.	./.
chr5	140572497	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:31:167:0.024:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	140572668	rs597064	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,66:31:67:0.985:2	0/1:1,35:31:36:0.972:2	0/1:5,4:29:9:0.444:2	./.	0/1:37,22:30:59:0.373:2	0/1:38,28:30:66:0.424:2	0/1:28,35:31:64:0.556:2	0/1:0,70:30:71:1.00:2	0/1:64,36:31:100:0.360:2	0/1:43,26:31:69:0.377:2	0/1:0,83:31:83:1.00:2
chr5	140572763	rs2907323	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,45:32:95:0.474:2	./.	./.	./.	./.	./.	./.	./.
chr5	140573097	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:31:85:0.047:2	./.
chr5	140573439	rs610836	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,49:28:51:0.961:2	0/1:0,30:29:30:1.00:2	0/1:7,6:27:13:0.462:2	./.	0/1:31,14:27:45:0.311:2	0/1:43,30:28:73:0.411:2	0/1:27,12:25:39:0.308:2	0/1:1,58:28:59:0.983:2	0/1:52,16:28:68:0.235:2	0/1:26,39:29:65:0.600:2	0/1:0,40:26:40:1.00:2
chr5	140573442	rs622424	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,48:32:50:0.960:2	0/1:0,30:32:30:1.00:2	0/1:8,6:32:14:0.429:2	./.	0/1:30,14:30:44:0.318:2	0/1:39,29:32:68:0.426:2	0/1:26,12:30:38:0.316:2	0/1:1,58:31:59:0.983:2	0/1:50,16:33:66:0.242:2	0/1:26,39:32:65:0.600:2	0/1:0,39:30:40:1.00:2
chr5	140573461	rs144530343	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,17:27:46:0.370:2	0/1:40,5:29:45:0.111:2	./.	./.
chr5	140573508	rs112214830	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,7:32:27:0.269:2	0/1:9,6:30:15:0.400:2	./.	./.	./.	0/1:36,7:32:43:0.163:2	0/1:18,4:31:23:0.182:2	0/1:22,5:32:27:0.185:2	./.	./.	0/1:14,5:30:19:0.263:2
chr5	140573565	rs17844567	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,3:32:31:0.097:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	140573613	rs17844571	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,41:29:83:0.500:2	./.	./.
chr5	140573701	rs140539952	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:30:46:0.087:2	./.	./.	./.	./.	./.
chr5	140573709	rs17844577	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,13:32:46:0.283:2	./.
chr5	140573742	rs17844580	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,4:31:17:0.235:2	./.	./.	./.	./.	./.
chr5	140573746	rs17844582	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,4:30:16:0.250:2	./.	./.	./.	./.	./.
chr5	140573754	rs702386	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,2:28:2:1.00:2	0/1:0,4:27:4:1.00:2	./.	0/1:9,3:27:12:0.250:2	./.	./.	./.	./.	./.	./.	./.
chr5	140574238	rs200555919	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2
chr5	140574860	rs75788551	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,36:30:83:0.434:2	./.	./.	./.	./.
chr5	140575211	rs629168	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,13:32:13:1.00:2	0/1:0,7:32:7:1.00:2	./.	0/1:10,4:31:14:0.286:2	0/1:7,11:31:18:0.611:2	0/1:11,7:31:18:0.389:2	0/1:5,4:32:9:0.444:2	0/1:0,4:31:4:1.00:2	0/1:4,3:32:7:0.429:2	./.	0/1:0,16:31:16:1.00:2
chr5	140579358	rs3756323	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,22:30:50:0.440:2	0/1:12,8:28:20:0.400:2	./.	./.	./.	0/1:33,9:26:42:0.214:2	0/1:36,14:30:50:0.280:2	0/1:22,24:30:46:0.522:2	./.	./.	0/1:17,24:28:41:0.585:2
chr5	140579367	rs917535	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,18:30:40:0.450:2	./.
chr5	140579834	rs61743184	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,9:32:20:0.450:2	./.
chr5	140580695	rs61739364	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:29:67:0.060:2	./.	./.	./.
chr5	140580772	rs57636116	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,39:32:91:0.429:2	0/1:22,18:32:40:0.450:2	./.	./.	./.	0/1:54,48:32:102:0.471:2	0/1:62,60:32:122:0.492:2	0/1:73,71:31:144:0.493:2	./.	./.	0/1:50,46:31:96:0.479:2
chr5	140580834	rs377311561	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:31:157:0.025:2	./.	./.	./.	./.	./.
chr5	140580931	rs34415020	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,84:30:86:0.977:2	0/1:0,46:30:46:1.00:2	0/1:3,7:32:10:0.700:2	./.	0/1:17,44:30:61:0.721:2	0/1:35,56:30:91:0.615:2	0/1:43,32:31:76:0.427:2	0/1:0,86:30:87:1.00:2	0/1:49,45:31:96:0.479:2	0/1:36,54:31:90:0.600:2	0/1:0,49:31:49:1.00:2
chr5	140580941	rs138686663	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:37,5:31:42:0.119:2	./.	./.	./.	0/1:61,15:31:76:0.197:2	0/1:55,8:30:63:0.127:2	0/1:60,13:31:73:0.178:2	./.	./.	0/1:37,3:33:40:0.075:2
chr5	140580967	rs149572646	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:17,3:30:20:0.150:2	./.	./.	./.	0/1:24,6:31:30:0.200:2	./.	./.	./.	./.	./.
chr5	140581510	rs638054	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:14,11:32:25:0.440:2	0/1:2,5:30:7:0.714:2	0/1:0,2:32:2:1.00:2	./.	0/1:11,9:32:20:0.450:2	./.	./.	0/1:22,19:32:41:0.463:2	0/1:15,16:34:31:0.516:2	./.	0/1:8,10:32:18:0.556:2
chr5	140589738	rs2910327	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,26:30:54:0.481:2	./.	./.	./.	./.	./.	./.	./.
chr5	140589946	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,3:34:63:0.048:2	./.
chr5	140590658	rs62378914	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,8:28:22:0.381:2	./.	./.
chr5	140590766	rs2910006	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:7,26:32:33:0.788:2	0/1:4,10:33:14:0.714:2	./.	0/1:10,17:33:27:0.630:2	./.	0/1:14,16:32:30:0.533:2	0/1:10,10:32:20:0.500:2	0/1:7,22:34:29:0.759:2	./.	0/1:12,14:34:26:0.538:2	0/1:22,17:33:39:0.436:2
chr5	140591376	rs72805002	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,47:33:98:0.480:2
chr5	140591553	rs12374500	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,42:33:82:0.512:2	./.
chr5	140593859	rs200174243	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:141,23:31:164:0.140:2	0/1:106,35:29:141:0.248:2	./.	./.	./.	0/1:153,19:29:172:0.110:2	0/1:128,32:29:160:0.200:2	0/1:120,43:30:163:0.264:2	./.	./.	0/1:145,43:28:188:0.229:2
chr5	140594292	rs202183259	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:182,16:29:198:0.081:2	./.	./.	./.	./.	./.	./.	./.
chr5	140594406	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,71:32:141:0.504:2	./.
chr5	140594442	rs17844607	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:123,15:33:138:0.109:2	0/1:82,17:31:99:0.172:2	0/1:20,5:31:25:0.200:2	./.	0/1:110,15:32:125:0.120:2	./.	./.	0/1:109,15:32:124:0.121:2	0/1:100,25:32:125:0.200:2	./.	0/1:132,25:32:157:0.159:2
chr5	140594778	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:34:161:0.025:2	./.
chr5	140594814	rs111467149	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:33:121:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	140595106	rs2910329	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:34,31:30:65:0.477:2	0/1:21,15:28:36:0.417:2	./.	0/1:32,28:28:60:0.467:2	./.	0/1:28,28:29:56:0.500:2	0/1:25,17:31:42:0.405:2	0/1:22,20:31:42:0.476:2	./.	0/1:30,21:30:51:0.412:2	0/1:22,11:30:33:0.333:2
chr5	140595120	rs142680277	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:32:71:0.056:2	./.	./.	./.	./.	./.
chr5	140595183	rs2910330	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,54:31:104:0.519:2	./.	./.	./.	./.	./.	./.	./.
chr5	140595226	rs147725011	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:128,4:32:132:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr5	140595343	rs56309578	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	0/1:0,2:35:2:1.00:2	./.	./.	./.
chr5	140595455	rs200123507	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	0/1:1,4:32:5:0.800:2	./.	./.	./.
chr5	140595563	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.
chr5	140595625	rs2910005	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr5	140595649	rs141899378	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.
chr5	140595756	rs17844617	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:31:11:0.455:2	./.	./.	./.	./.	0/1:14,18:32:32:0.563:2	0/1:1,3:32:4:0.750:2	0/1:19,3:32:22:0.136:2	./.	./.	0/1:5,7:31:12:0.583:2
chr5	140595802	rs17844618	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:12,5:33:17:0.294:2	0/1:7,6:31:13:0.462:2	0/1:3,2:36:5:0.400:2	./.	./.	0/1:16,29:32:45:0.644:2	0/1:6,7:33:13:0.538:2	0/1:25,16:32:41:0.390:2	./.	./.	0/1:12,14:32:26:0.538:2
chr5	140596140	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.
chr5	140596162	rs2910332	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:121,74:31:195:0.379:2	./.	./.	./.	./.	./.	./.	./.
chr5	140596704	rs2910333	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:46,45:32:91:0.495:2	0/1:31,34:32:65:0.523:2	./.	0/1:53,60:32:113:0.531:2	./.	0/1:66,67:32:133:0.504:2	0/1:64,42:32:106:0.396:2	0/1:47,64:32:112:0.577:2	./.	0/1:58,48:31:106:0.453:2	0/1:78,73:32:151:0.483:2
chr5	140597223	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,10:31:37:0.270:2
chr5	140597411	rs188508748	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,27:30:54:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr5	140597741	rs10069889	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:32:8:0.500:2	./.
chr5	140598543	rs702384	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:37,30:32:67:0.448:2	0/1:17,15:30:32:0.469:2	0/1:6,4:30:10:0.400:2	./.	0/1:10,15:31:25:0.600:2	./.	./.	0/1:36,18:31:54:0.333:2	0/1:28,21:30:49:0.429:2	./.	0/1:36,36:32:72:0.500:2
chr5	140604493	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,6:31:92:0.065:2	./.	./.	./.	./.	./.
chr5	140604564	rs61997246	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,28:29:73:0.384:2	./.
chr5	140604621	rs144421802	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,41:31:79:0.519:2	./.	./.	./.	./.	./.
chr5	140604721	rs2910003	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:7,3:29:10:0.300:2	0/1:6,3:33:9:0.333:2	./.	0/1:6,8:31:14:0.571:2	./.	0/1:9,10:31:19:0.526:2	0/1:0,3:33:3:1.00:2	0/1:1,7:27:8:0.875:2	./.	0/1:6,6:32:13:0.500:2	./.
chr5	140604950	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.
chr5	140605030	rs650955	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr5	140605078	rs2907322	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.
chr5	140605162	rs4080545	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,4:30:12:0.333:2	./.	./.
chr5	140605601	rs73275709	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,21:30:44:0.477:2	0/1:14,11:30:25:0.440:2	./.	./.	./.	0/1:19,21:29:40:0.525:2	0/1:19,14:32:33:0.424:2	0/1:15,12:28:28:0.444:2	./.	./.	0/1:33,25:29:58:0.431:2
chr5	140625629	rs150283740	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,17:29:33:0.515:2	./.
chr5	140626529	rs17844564	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,17:30:45:0.378:2	0/1:10,14:31:24:0.583:2	./.	./.	./.	0/1:33,19:30:54:0.365:2	0/1:12,21:30:33:0.636:2	0/1:21,14:31:35:0.400:2	./.	./.	0/1:13,14:31:27:0.519:2
chr5	140626566	rs618506	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:24,24:31:48:0.500:2	0/1:18,19:31:37:0.514:2	0/1:4,3:30:7:0.429:2	./.	0/1:17,25:29:42:0.595:2	./.	./.	0/1:27,21:30:48:0.438:2	0/1:25,15:31:40:0.375:2	./.	0/1:18,9:31:27:0.333:2
chr5	140626571	rs652104	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:21,26:32:47:0.553:2	0/1:18,19:32:37:0.514:2	0/1:5,4:31:9:0.444:2	./.	0/1:19,24:31:43:0.558:2	./.	./.	0/1:28,24:31:52:0.462:2	0/1:25,16:32:41:0.390:2	./.	0/1:21,12:32:33:0.364:2
chr5	140626627	rs618096	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,63:31:64:0.984:2	0/1:0,57:32:57:1.00:2	0/1:8,7:31:15:0.467:2	0/1:46,66:31:112:0.589:2	0/1:42,41:30:83:0.494:2	0/1:58,59:31:117:0.504:2	0/1:30,34:31:64:0.531:2	0/1:0,108:31:108:1.00:2	0/1:48,40:33:88:0.455:2	0/1:50,31:32:82:0.383:2	0/1:0,50:31:50:1.00:2
chr5	140626724	rs3776091	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,27:31:60:0.458:2	0/1:37,11:30:48:0.229:2	./.	./.	./.	0/1:44,52:30:96:0.542:2	0/1:32,26:29:58:0.448:2	0/1:57,36:30:93:0.387:2	./.	./.	0/1:19,20:29:39:0.513:2
chr5	140626767	rs3096081	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,17:31:34:0.500:2	./.	./.	./.	./.	./.	0/1:11,10:32:21:0.476:2	./.
chr5	140626775	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.
chr5	140682757	rs3749780	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,28:29:57:0.491:2	0/1:18,16:29:34:0.471:2	0/1:22,25:30:47:0.532:2	0/1:23,12:30:35:0.343:2	./.	./.	0/1:18,16:31:35:0.471:2	./.
chr5	140682958	rs10075302	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,7:31:8:0.875:2	./.	./.	./.	./.	./.	./.
chr5	140682993	rs34663948	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,4:30:16:0.250:2	./.	./.	./.	./.	./.
chr5	140683265	rs11952797	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:40,53:31:93:0.570:2	0/1:29,27:32:56:0.482:2	0/1:14,14:31:28:0.500:2	./.	./.	0/1:67,65:31:132:0.492:2	./.	0/1:1,145:31:147:0.993:2	0/1:0,128:32:128:1.00:2	0/1:35,49:31:84:0.583:2	0/1:63,35:32:98:0.357:2
chr5	140683527	rs77201699	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,21:28:46:0.457:2	./.	./.	./.	./.	./.	./.
chr5	140683555	rs111702937	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,8:32:20:0.400:2	./.	./.	./.	./.	./.	./.
chr5	140699881	rs143483447	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,24:32:43:0.558:2	./.	./.
chr5	140700378	rs113972975	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,4:31:8:0.500:2	./.	./.	./.	./.	./.	./.
chr5	140710705	rs2472647	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:32:33:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,17:31:17:1.00:2	0/1:9,12:32:21:0.571:2	0/1:0,25:30:25:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,44:31:44:1.00:2
chr5	140710810	rs76571170	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,17:31:47:0.362:2	./.	./.	./.	./.	./.	./.
chr5	140711595	rs111327215	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,17:30:34:0.500:2
chr5	140711853	rs17097187	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,40:31:93:0.430:2	./.	./.	./.	./.	./.	./.	./.
chr5	140712210	rs62378403	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:27:5:0.600:2	./.	0/1:4,6:26:10:0.600:2	./.	./.	./.	./.	./.	./.
chr5	140712375	rs151257732	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:29:12:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	140718566	rs191299749	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:31:10:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	140719090	rs6861047	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,33:30:62:0.541:2	./.	0/1:42,36:30:78:0.462:2	0/1:52,37:32:89:0.416:2	./.	./.	0/1:30,39:31:69:0.565:2	./.
chr5	140719283	rs150706052	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:32:10:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	140720516	rs35592458	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,14:32:23:0.609:2	0/1:6,8:29:14:0.571:2	./.	./.	0/1:4,8:30:12:0.667:2	0/1:15,10:29:25:0.400:2	./.	0/1:0,21:31:21:1.00:2	0/1:0,19:32:19:1.00:2	0/1:14,12:31:26:0.462:2	./.
chr5	140720954	rs66823521	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,51:33:128:0.398:2	0/1:85,49:34:134:0.366:2	./.	0/1:97,82:32:179:0.458:2
chr5	140723835	rs11575947	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,17:31:42:0.405:2	0/1:21,19:32:40:0.475:2	./.	0/1:20,22:31:42:0.524:2
chr5	140724060	rs11575948	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,18:33:36:0.500:2	./.	./.	./.	./.	./.	./.
chr5	140725547	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:30:5:0.600:2	./.	./.	0/1:1,4:28:5:0.800:2	./.	./.	./.	./.	./.	./.
chr5	140725745	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,4:32:24:0.167:2	./.	./.	./.
chr5	140725750	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,4:33:18:0.222:2	./.	./.	./.
chr5	140725784	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,3:33:18:0.167:2	./.	./.	./.	./.	./.	./.
chr5	140725790	rs376373404	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,4:31:19:0.211:2	./.	./.	./.
chr5	140725828	rs7736541	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,23:30:34:0.676:2	0/1:14,14:30:29:0.500:2	./.	0/1:35,12:28:47:0.255:2	0/1:0,32:28:32:1.00:2	0/1:32,26:29:58:0.448:2	0/1:0,25:28:25:1.00:2	./.	./.	0/1:25,27:29:53:0.519:2	0/1:25,18:30:43:0.419:2
chr5	140731357	rs3749778	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,4:30:7:0.571:2	./.	./.	./.	./.	./.	./.
chr5	140731769	rs147767080	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,14:30:29:0.483:2	./.	./.	./.	./.	./.	./.	./.
chr5	140731783	rs200739845	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,5:26:54:0.093:2	./.	./.	./.	./.	./.	./.
chr5	140735215	rs11575949	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	0/1:2,8:31:10:0.800:2	./.	./.	./.	./.	./.	./.
chr5	140736474	rs17097226	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,7:29:17:0.412:2	./.	0/1:57,33:29:90:0.367:2	./.	./.	./.	./.	./.	./.
chr5	140736528	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2	./.	./.	./.
chr5	140736554	rs146063218	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,12:31:28:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	140736689	rs4329068	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,48:30:109:0.440:2	./.	./.	./.	./.	./.	./.
chr5	140739779	rs17097231	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:38,38:29:76:0.500:2	0/1:23,13:30:36:0.361:2	./.	./.	./.	./.	0/1:43,48:31:91:0.527:2	./.	./.	./.	0/1:46,50:30:96:0.521:2
chr5	140739874	rs13171859	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,19:30:33:0.576:2	0/1:24,15:31:39:0.385:2	0/1:27,11:31:38:0.289:2	0/1:20,20:31:40:0.500:2
chr5	140741407	rs138456654	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,31:31:42:0.738:2	./.	./.	./.	./.	./.	./.
chr5	140741463	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:31:54:0.074:2	./.	./.	./.	./.	./.
chr5	140741673	rs73265834	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,26:30:46:0.565:2	./.	./.	./.	./.	./.	./.
chr5	140741738	rs62378417	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,11:32:13:0.846:2	./.	0/1:34,50:30:84:0.595:2	./.	./.	./.	./.	./.	./.
chr5	140741761	rs57735633	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,13:33:21:0.619:2	./.	0/1:40,70:32:110:0.636:2	./.	./.	./.	./.	./.	./.
chr5	140744113	rs149041036	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,9:31:19:0.474:2	./.	./.	./.	./.	./.	./.
chr5	140744395	rs57308563	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:30:11:0.273:2	./.	0/1:45,37:31:82:0.451:2	./.	./.	./.	./.	./.	./.
chr5	140745634	rs11750908	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,37:31:78:0.474:2	./.	./.	./.	./.	./.
chr5	140745719	rs62378419	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,70:31:126:0.560:2	./.	./.	./.
chr5	140750044	rs6860609	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:32:63:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,73:31:73:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,97:33:97:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,93:31:93:1.00:2
chr5	140750597	rs62378420	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,26:30:83:0.313:2	./.	./.	0/1:41,37:30:78:0.474:2
chr5	140751128	rs2240697	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,20:33:39:0.513:2	0/1:7,3:34:10:0.300:2	./.	0/1:11,12:33:23:0.522:2	0/1:0,35:32:35:1.00:2	0/1:10,15:31:25:0.600:2	0/1:0,26:32:26:1.00:2	0/1:10,14:31:24:0.583:2	./.	0/1:10,16:32:26:0.615:2	0/1:15,17:33:33:0.531:2
chr5	140751696	rs62620756	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,75:31:137:0.547:2	./.	./.	0/1:24,34:30:58:0.586:2
chr5	140753842	rs3749775	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,75:28:133:0.568:2	./.	./.	./.	./.	./.	./.
chr5	140755387	rs62378422	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,8:29:19:0.421:2	./.	./.	0/1:16,9:31:25:0.360:2	./.	./.	0/1:7,6:32:13:0.462:2
chr5	140755495	rs3749773	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,7:29:7:1.00:2	./.	./.	./.	./.	./.	./.
chr5	140755573	rs11575954	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	./.	./.
chr5	140762763	rs7704696	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,7:33:9:0.778:2	./.	0/1:32,14:30:46:0.304:2	./.	./.	./.	./.	./.	./.
chr5	140762993	rs72790024	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,48:31:109:0.440:2	./.	./.	./.	./.	./.	./.
chr5	140763029	rs2072315	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,41:33:82:0.500:2	0/1:45,32:32:77:0.416:2	0/1:4,5:32:9:0.556:2	0/1:59,53:32:112:0.473:2	0/1:0,127:32:127:1.00:2	0/1:48,68:32:116:0.586:2	0/1:1,131:33:132:0.992:2	0/1:79,86:32:165:0.521:2	./.	0/1:54,59:32:113:0.522:2	0/1:57,44:32:101:0.436:2
chr5	140763100	rs2240698	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,46:30:83:0.554:2	./.	./.	./.	./.
chr5	140763888	rs6883770	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,14:30:36:0.389:2	./.	./.	./.	./.	./.	./.
chr5	140764218	rs138410124	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,43:32:85:0.506:2	./.	./.	./.	./.	./.	./.	./.
chr5	140764320	rs114533608	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,38:28:93:0.409:2	./.	./.	./.	./.	./.	./.
chr5	140767902	rs67622091	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,74:32:168:0.440:2	./.	./.	./.	0/1:163,7:33:170:0.041:2	0/1:164,6:33:170:0.035:2	./.
chr5	140767911	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,7:33:157:0.045:2	0/1:157,6:33:163:0.037:2	./.
chr5	140767989	rs68033444	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,28:31:55:0.509:2	./.	./.	./.	./.	./.	./.
chr5	140767991	rs77505166	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,19:31:49:0.388:2	./.	./.	./.	./.	./.	./.
chr5	140768996	rs201662463	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,11:30:27:0.407:2	./.	./.	./.	./.
chr5	140769289	rs141134077	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,3:27:9:0.333:2	./.	./.	./.	./.	./.	./.
chr5	140772410	rs77141792	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,4:30:11:0.364:2	./.	./.	./.	./.	./.	./.
chr5	140772427	rs726684	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,7:28:25:0.280:2	./.	0/1:15,9:26:24:0.375:2	0/1:12,16:28:28:0.571:2	./.	./.	0/1:6,5:28:11:0.455:2	./.
chr5	140772573	rs182052960	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,16:33:46:0.348:2	./.	./.
chr5	140772679	rs148589854	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	140773388	rs2240700	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:83,67:33:150:0.447:2	0/1:70,44:32:114:0.386:2	./.	./.	0/1:76,54:32:130:0.415:2	./.	0/1:99,70:32:169:0.414:2	./.	./.	./.	./.
chr5	140773719	rs141035845	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,5:31:17:0.294:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	140773888	rs11575959	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,30:33:66:0.455:2	./.	./.	./.	./.	./.	./.
chr5	140774288	rs4912749	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:30:31:1.00:2	0/1:1,20:29:21:0.952:2	0/1:0,3:31:3:1.00:2	0/1:1,23:31:24:0.958:2	0/1:0,28:30:28:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,25:30:25:1.00:2
chr5	140778256	rs6867460	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:24,16:32:40:0.400:2	0/1:15,11:32:26:0.423:2	./.	./.	0/1:15,19:31:34:0.559:2	./.	0/1:16,13:30:29:0.448:2	./.	./.	./.	./.
chr5	140778760	rs138699584	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:31:9:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	140783596	rs1363448	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,44:32:96:0.458:2	0/1:43,22:33:65:0.338:2	0/1:3,8:32:11:0.727:2	0/1:83,64:31:147:0.435:2	0/1:0,77:31:77:1.00:2	0/1:76,61:31:137:0.445:2	0/1:1,59:32:60:0.983:2	0/1:65,55:32:120:0.458:2	./.	0/1:66,42:32:108:0.389:2	0/1:64,60:32:124:0.484:2
chr5	140783849	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:29:68:0.059:2	./.	./.	./.	./.
chr5	140784055	rs3749770	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:37,44:30:82:0.543:2	0/1:25,24:29:49:0.490:2	0/1:10,3:30:13:0.231:2	./.	0/1:0,67:30:67:1.00:2	./.	0/1:42,29:29:71:0.408:2	0/1:61,49:30:110:0.445:2	./.	./.	0/1:40,38:30:79:0.487:2
chr5	140784427	rs3749769	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:52,34:28:86:0.395:2	0/1:35,25:29:60:0.417:2	./.	./.	./.	./.	0/1:97,74:29:171:0.433:2	./.	./.	./.	./.
chr5	140784820	rs78501291	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,97:31:175:0.554:2	./.	./.	0/1:67,57:31:124:0.460:2
chr5	140784895	rs4912606	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,19:32:85:0.224:2	./.	./.	./.	./.	./.
chr5	140787850	rs62378453	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,44:27:109:0.407:2	./.	./.	0/1:70,58:27:128:0.453:2	./.	./.	0/1:44,36:26:80:0.450:2
chr5	140788264	rs58047392	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:26,18:31:44:0.409:2	0/1:14,12:31:26:0.462:2	./.	./.	0/1:9,14:31:23:0.609:2	./.	0/1:15,5:32:20:0.250:2	./.	./.	./.	./.
chr5	140789819	rs3749768	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,43:32:115:0.374:2	./.	./.	./.	./.	./.	./.
chr5	140789933	rs3749767	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:93,75:29:168:0.446:2	0/1:62,57:30:120:0.479:2	0/1:13,6:29:19:0.316:2	./.	0/1:5,173:30:178:0.972:2	./.	0/1:95,85:30:180:0.472:2	0/1:89,90:30:179:0.503:2	./.	./.	0/1:102,83:30:185:0.449:2
chr5	140793007	rs4912751	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,20:31:44:0.455:2	0/1:24,16:31:40:0.400:2	0/1:5,6:32:11:0.545:2	0/1:23,22:32:45:0.489:2	0/1:0,30:31:30:1.00:2	0/1:11,20:31:31:0.645:2	0/1:0,22:32:22:1.00:2	0/1:14,12:31:26:0.462:2	./.	0/1:17,11:32:28:0.393:2	0/1:8,33:32:41:0.805:2
chr5	140794945	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,3:33:54:0.056:2	./.	./.	./.	./.	./.	./.
chr5	140797630	rs2015825	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,32:29:72:0.444:2	0/1:34,29:30:63:0.460:2	0/1:7,6:27:13:0.462:2	0/1:44,53:28:97:0.546:2	0/1:2,100:28:102:0.980:2	0/1:48,33:27:81:0.407:2	0/1:0,88:28:88:1.00:2	0/1:64,56:28:120:0.467:2	./.	0/1:34,30:28:64:0.469:2	0/1:52,37:28:89:0.416:2
chr5	140797827	rs144490159	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,11:32:23:0.478:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	140797963	rs139206858	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:29:10:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	140797970	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:31:96:0.042:2
chr5	140798639	rs17208397	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,36:32:93:0.387:2	./.	0/1:60,47:32:107:0.439:2	0/1:47,24:32:71:0.338:2	./.	./.	0/1:44,31:33:75:0.413:2	./.
chr5	140799449	rs145814583	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	140799812	rs72790042	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,16:32:37:0.432:2	./.	./.	./.	./.	./.	./.
chr5	140801104	rs11167744	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:20,15:32:35:0.429:2	0/1:21,12:33:33:0.364:2	./.	./.	./.	./.	0/1:12,18:32:30:0.600:2	./.	./.	./.	./.
chr5	140801298	rs73792198	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:23,20:30:43:0.465:2	0/1:14,9:31:23:0.391:2	./.	./.	./.	./.	0/1:17,9:31:26:0.346:2	./.	./.	./.	./.
chr5	140802399	rs12520854	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,55:29:111:0.495:2	./.	./.	./.	./.	./.
chr5	140802456	rs62378455	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,68:31:116:0.586:2	./.	./.	0/1:36,33:31:69:0.478:2
chr5	140802564	rs114907564	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,47:32:80:0.588:2
chr5	140802723	rs62378456	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,13:30:18:0.722:2	./.	./.	0/1:0,2:28:2:1.00:2
chr5	140803241	rs57195665	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:35,24:31:59:0.407:2	0/1:17,8:31:25:0.320:2	./.	./.	./.	./.	0/1:27,15:29:42:0.357:2	./.	./.	./.	./.
chr5	140803404	rs73792199	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,34:32:109:0.312:2	./.	./.	./.	./.
chr5	140803492	rs17097293	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:77,54:33:131:0.412:2	0/1:44,52:32:96:0.542:2	0/1:17,8:32:25:0.320:2	./.	0/1:1,88:32:89:0.989:2	./.	0/1:73,40:32:113:0.354:2	0/1:56,55:32:111:0.495:2	./.	./.	0/1:94,60:33:154:0.390:2
chr5	140803570	rs150506228	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,13:32:18:0.722:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	140810959	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,15:30:40:0.375:2	./.	./.	./.	./.	./.	./.
chr5	140812002	rs78612001	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,21:29:46:0.457:2	./.	./.	./.	./.	./.	./.
chr5	140812597	rs116611363	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,25:32:52:0.481:2	./.
chr5	140812600	rs115990854	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,25:32:51:0.490:2	./.
chr5	140856265	rs2075661	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,48:28:101:0.475:2	./.	0/1:46,44:28:90:0.489:2	0/1:74,49:28:123:0.398:2	./.	./.	0/1:40,27:29:67:0.403:2	./.
chr5	140857798	rs1423148	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,28:30:59:0.475:2	0/1:17,8:29:25:0.320:2	./.	0/1:26,22:30:48:0.458:2	0/1:0,31:30:31:1.00:2	0/1:37,29:30:66:0.439:2	0/1:0,38:29:38:1.00:2	0/1:33,37:30:70:0.529:2	./.	0/1:18,23:31:41:0.561:2	0/1:38,22:31:60:0.367:2
chr5	140858245	rs3805695	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:2,171:32:173:0.988:2	0/1:0,68:32:68:1.00:2	./.	./.	0/1:90,77:31:168:0.461:2	./.	0/1:98,58:32:156:0.372:2	./.	./.	./.	./.
chr5	140864784	rs138463062	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:30:8:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	140865264	rs76923861	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,10:31:25:0.400:2	./.	./.	./.	./.	./.	./.
chr5	140866966	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:33:146:0.027:2	./.	./.	./.	./.
chr5	140867152	rs114918874	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,4:29:15:0.267:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	140867347	rs1423149	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:32:7:0.571:2	./.	0/1:23,9:32:32:0.281:2	./.	./.	./.	./.	./.	./.
chr5	140869003	rs1002519	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,25:33:51:0.490:2	./.	0/1:26,19:32:45:0.422:2	0/1:24,21:32:45:0.467:2	0/1:25,27:32:52:0.519:2	./.	0/1:27,20:32:47:0.426:2	0/1:27,28:32:55:0.509:2
chr5	140869599	rs2233602	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,40:31:101:0.396:2	./.	./.	./.	./.	./.	./.
chr5	140870165	rs141484080	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,22:30:33:0.667:2	./.	./.	./.	./.
chr5	140870516	rs2074912	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,16:31:42:0.381:2	./.	0/1:22,28:32:50:0.560:2	0/1:32,22:31:54:0.407:2	./.	./.	0/1:20,17:32:37:0.459:2	./.
chr5	140870829	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.
chr5	140870949	rs918558	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:31,14:31:45:0.311:2	0/1:83,77:31:160:0.481:2	./.	0/1:70,71:30:141:0.504:2	0/1:87,78:30:165:0.473:2	./.	./.	0/1:65,64:30:129:0.496:2	./.
chr5	140871126	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:31:75:0.053:2	./.	./.
chr5	140871249	rs11952292	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,7:31:18:0.389:2	./.	./.	./.	./.	./.	./.
chr5	140871425	rs17208425	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,41:33:93:0.441:2	./.	0/1:30,39:32:69:0.565:2	0/1:53,25:32:78:0.321:2	./.	./.	0/1:42,29:32:71:0.408:2	./.
chr5	140890560	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:30:95:0.042:2	./.
chr5	140915616	rs147677041	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,16:31:35:0.457:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	141014494	rs2530223	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:33:96:1.00:2	0/1:0,60:32:60:1.00:2	0/1:8,5:33:13:0.385:2	0/1:4,137:33:141:0.972:2	0/1:75,58:32:133:0.436:2	0/1:67,59:32:126:0.468:2	0/1:0,146:33:146:1.00:2	0/1:69,72:32:141:0.511:2	./.	0/1:77,61:32:138:0.442:2	0/1:71,63:33:134:0.470:2
chr5	141016288	rs1421896	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:33:67:1.00:2	0/1:0,39:32:39:1.00:2	0/1:12,6:33:18:0.333:2	0/1:2,123:32:125:0.984:2	0/1:73,56:32:129:0.434:2	0/1:66,48:32:115:0.421:2	0/1:2,103:32:105:0.981:2	0/1:78,63:32:141:0.447:2	./.	0/1:52,40:32:92:0.435:2	0/1:45,48:32:93:0.516:2
chr5	141019110	rs14251	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,32:30:32:1.00:2	0/1:1,25:31:26:0.962:2	0/1:4,4:31:8:0.500:2	./.	0/1:61,51:29:112:0.455:2	./.	0/1:51,44:31:95:0.463:2	0/1:34,42:31:76:0.553:2	./.	./.	0/1:26,20:32:46:0.435:2
chr5	141019569	rs17855844	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:1,61:28:62:0.984:2	0/1:0,28:27:28:1.00:2	./.	./.	./.	./.	0/1:35,35:28:70:0.500:2	./.	./.	./.	./.
chr5	141019830	rs11742646	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,34:32:34:1.00:2	0/1:0,17:31:17:1.00:2	./.	./.	./.	./.	0/1:17,9:31:26:0.346:2	./.	./.	./.	./.
chr5	141021096	rs32957	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,54:31:92:0.587:2	./.	./.	0/1:38,36:33:74:0.486:2
chr5	141021294	rs116772138	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,5:34:21:0.238:2	0/1:11,8:33:19:0.421:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	141029072	rs11739451	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:10,9:32:19:0.474:2	0/1:11,8:32:19:0.421:2	./.	./.	./.	./.	0/1:7,13:31:20:0.650:2	./.	./.	./.	./.
chr5	141030640	rs17287002	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,47:29:48:0.979:2	./.	./.	./.	./.	./.	./.	./.
chr5	141033870	rs61749636	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,17:33:24:0.708:2	0/1:1,121:33:122:0.992:2	./.	./.	./.	./.	./.	./.	./.
chr5	141035248	rs2306340	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,64:33:132:0.485:2	./.	./.
chr5	141035765	rs140445106	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,12:34:26:0.462:2	./.	./.
chr5	141036337	rs7703648	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:32:8:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,43:32:43:1.00:2	./.	0/1:28,27:33:55:0.491:2	0/1:37,22:32:59:0.373:2	./.	./.	0/1:26,29:31:55:0.527:2
chr5	141049298	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:179,4:32:183:0.022:2	./.	./.	./.	./.	./.	./.
chr5	141051236	rs12514851	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,3:33:11:0.273:2	0/1:54,33:29:87:0.379:2	0/1:35,22:30:57:0.386:2	./.	0/1:33,25:30:58:0.431:2	./.	./.	./.	./.
chr5	141052386	rs145726375	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,26:28:63:0.413:2	./.	./.	./.	./.
chr5	141052416	rs1057371	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,7:31:20:0.350:2	./.	./.
chr5	141052986	rs150744263	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,62:31:195:0.318:2	./.
chr5	141059158	rs1031904	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:33,19:33:52:0.365:2	0/1:6,10:32:16:0.625:2	./.	./.	./.	./.	0/1:5,30:33:35:0.857:2	./.	./.	0/1:23,19:34:42:0.452:2	./.
chr5	141059649	rs417503	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,20:32:38:0.526:2	0/1:10,4:32:14:0.286:2	0/1:0,3:31:3:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,20:31:20:1.00:2	./.	0/1:0,30:33:30:1.00:2	0/1:19,21:28:40:0.525:2	0/1:17,16:33:33:0.485:2	0/1:8,12:32:20:0.600:2	0/1:23,10:31:33:0.303:2
chr5	141059868	rs11167756	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,12:33:12:1.00:2	0/1:4,172:33:176:0.977:2	0/1:0,182:33:182:1.00:2	./.	./.	0/1:118,77:32:195:0.395:2	0/1:64,93:34:157:0.592:2	./.	0/1:58,43:33:101:0.426:2
chr5	141243646	rs3797054	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:28,23:28:51:0.451:2	0/1:11,22:28:33:0.667:2	0/1:1,4:27:5:0.800:2	./.	0/1:49,43:29:92:0.467:2	0/1:1,89:29:90:0.989:2	0/1:53,42:29:95:0.442:2	./.	0/1:52,37:29:89:0.416:2	0/1:24,35:29:59:0.593:2	0/1:26,39:28:65:0.600:2
chr5	141244356	rs3822357	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,82:31:189:0.434:2	./.	0/1:102,87:31:189:0.460:2	0/1:113,79:31:192:0.411:2	0/1:97,79:30:177:0.449:2
chr5	141248963	rs12515587	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,13:31:13:1.00:2	./.	./.
chr5	141304973	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:34:113:0.035:2	./.	./.	./.	./.	./.
chr5	141307833	rs10036567	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,58:33:133:0.436:2	0/1:59,79:32:138:0.572:2	./.	./.	./.	./.	./.	./.
chr5	141309265	rs10078802	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,44:32:91:0.484:2	0/1:62,39:31:101:0.386:2	./.	./.	./.	./.	./.	./.
chr5	141309824	rs351260	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,23:31:55:0.418:2	0/1:20,14:31:34:0.412:2	./.	./.	./.	0/1:37,43:30:81:0.538:2	./.	./.	0/1:0,73:30:74:1.00:2	0/1:23,30:30:53:0.566:2	0/1:42,28:31:70:0.400:2
chr5	141325249	rs105633	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,174:30:175:0.994:2	0/1:0,129:30:129:1.00:2	0/1:15,19:30:34:0.559:2	0/1:1,168:30:169:0.994:2	0/1:1,188:29:189:0.995:2	0/1:2,179:30:181:0.989:2	0/1:1,176:30:177:0.994:2	0/1:0,184:29:184:1.00:2	0/1:0,182:30:182:1.00:2	0/1:0,169:31:169:1.00:2	0/1:0,174:30:174:1.00:2
chr5	141335241	rs164073	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,18:33:44:0.409:2	0/1:15,8:31:23:0.348:2	./.	0/1:0,49:32:49:1.00:2	0/1:0,43:32:43:1.00:2	0/1:45,35:33:80:0.438:2	0/1:51,40:33:91:0.440:2	0/1:28,38:32:66:0.576:2	./.	0/1:33,26:32:59:0.441:2	0/1:20,12:31:32:0.375:2
chr5	141335284	rs164074	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,17:31:43:0.395:2	0/1:15,10:32:25:0.400:2	./.	0/1:40,26:31:66:0.394:2	0/1:0,55:32:55:1.00:2	0/1:48,45:31:93:0.484:2	0/1:53,36:32:89:0.404:2	0/1:40,46:32:86:0.535:2	./.	0/1:39,27:31:66:0.409:2	0/1:31,9:28:40:0.225:2
chr5	141335498	rs164515	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,11:32:29:0.379:2	0/1:13,15:32:28:0.536:2	./.	./.	./.	0/1:31,26:31:57:0.456:2	./.	./.	0/1:0,42:32:42:1.00:2	0/1:27,18:30:45:0.400:2	0/1:26,27:30:54:0.509:2
chr5	141335594	rs61737137	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,9:30:17:0.529:2	0/1:6,11:30:17:0.647:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	141336264	rs164075	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:69,52:31:121:0.430:2	0/1:61,47:32:108:0.435:2	./.	0/1:2,167:31:169:0.988:2	0/1:2,135:30:138:0.985:2	0/1:86,78:31:164:0.476:2	0/1:76,74:31:150:0.493:2	0/1:111,82:31:193:0.425:2	./.	0/1:85,64:31:149:0.430:2	0/1:97,83:31:180:0.461:2
chr5	141337126	rs164076	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:45,38:30:83:0.458:2	0/1:35,33:31:68:0.485:2	./.	0/1:65,68:29:133:0.511:2	0/1:1,169:29:170:0.994:2	0/1:75,73:29:148:0.493:2	0/1:83,74:29:157:0.471:2	0/1:102,64:29:166:0.386:2	./.	0/1:59,53:29:112:0.473:2	0/1:66,63:30:129:0.488:2
chr5	141337177	rs138689340	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:32:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	141337225	rs164077	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,21:30:45:0.467:2	0/1:19,18:30:37:0.486:2	0/1:2,4:27:6:0.667:2	0/1:0,63:30:63:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,51:30:51:1.00:2	0/1:36,32:28:68:0.471:2	0/1:52,34:29:86:0.395:2	0/1:0,52:31:52:1.00:2	0/1:29,25:29:54:0.463:2	0/1:0,46:29:47:1.00:2
chr5	141358149	rs61748697	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,33:31:71:0.465:2
chr5	141391532	rs164080	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:2,87:30:89:0.978:2	0/1:0,43:30:43:1.00:2	./.	0/1:1,96:30:97:0.990:2	./.	0/1:0,105:29:105:1.00:2	0/1:0,109:30:109:1.00:2	0/1:98,65:30:163:0.399:2	0/1:77,47:31:124:0.379:2	./.	0/1:77,63:31:140:0.450:2
chr5	141517422	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:33:148:0.027:2
chr5	142152428	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:31:145:0.028:2	./.	./.	./.	./.	./.
chr5	142254679	rs185200	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,37:32:74:0.500:2	0/1:22,24:31:46:0.522:2	0/1:5,12:33:17:0.706:2	0/1:45,45:32:90:0.500:2	0/1:53,26:31:79:0.329:2	0/1:0,72:32:72:1.00:2	0/1:0,68:32:68:1.00:2	0/1:57,48:32:105:0.457:2	0/1:55,43:33:98:0.439:2	./.	0/1:0,112:32:112:1.00:2
chr5	142283221	rs368251763	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:31:167:0.024:2	./.	./.	./.	./.
chr5	142301123	rs405320	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:33:18:0.500:2	./.	./.	./.	./.	0/1:11,11:31:22:0.500:2	./.	./.	0/1:28,9:32:37:0.243:2	./.	0/1:28,22:32:50:0.440:2
chr5	142301124	rs405312	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,9:33:19:0.474:2	./.	./.	./.	./.	0/1:11,11:31:22:0.500:2	./.	./.	0/1:26,9:30:35:0.257:2	./.	0/1:28,22:32:50:0.440:2
chr5	142301127	rs186355178	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,20:33:40:0.500:2	./.
chr5	142421415	rs2270068	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:32:62:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,153:32:153:1.00:2	0/1:1,147:32:148:0.993:2	0/1:0,128:32:128:1.00:2	0/1:1,128:33:130:0.992:2	0/1:0,143:32:143:1.00:2	0/1:0,143:33:143:1.00:2	0/1:0,111:32:111:1.00:2	0/1:2,122:32:124:0.984:2
chr5	142593652	rs258819	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:32:31:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,28:31:28:1.00:2
chr5	142661527	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:35:114:0.035:2	./.	./.
chr5	142675099	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,4:32:81:0.049:2	./.	./.	./.	./.	./.	./.	./.
chr5	142779317	rs56149945	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,43:32:77:0.558:2	./.	./.	./.	./.
chr5	142779488	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,3:32:47:0.064:2	./.	./.	./.	./.	./.
chr5	142779720	rs72542742	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,29:31:69:0.420:2	0/1:19,28:32:47:0.596:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	143200053	rs161557	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:105,59:31:164:0.360:2	0/1:57,35:31:92:0.380:2	./.	0/1:71,99:31:171:0.582:2	0/1:68,53:30:121:0.438:2	./.	0/1:87,42:31:129:0.326:2	./.	0/1:114,84:32:198:0.424:2	./.	0/1:106,90:31:196:0.459:2
chr5	143545052	rs35429531	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,9:31:22:0.409:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	143853560	rs201201619	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,41:30:88:0.466:2
chr5	145239379	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:32:96:0.042:2	./.	./.	./.	./.
chr5	145246085	rs2569006	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,35:31:61:0.574:2	0/1:17,25:31:42:0.595:2	0/1:4,5:33:9:0.556:2	0/1:50,38:31:88:0.432:2	0/1:40,35:32:75:0.467:2	0/1:40,36:33:76:0.474:2	0/1:49,32:32:81:0.395:2	./.	0/1:0,80:33:80:1.00:2	0/1:36,20:28:56:0.357:2	0/1:38,35:32:74:0.479:2
chr5	145393364	rs758037	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:33:61:1.00:2	0/1:0,42:31:42:1.00:2	0/1:3,7:32:10:0.700:2	0/1:0,75:33:75:1.00:2	0/1:29,21:31:50:0.420:2	0/1:2,75:32:77:0.974:2	0/1:28,38:32:66:0.576:2	0/1:42,37:33:79:0.468:2	0/1:35,32:33:68:0.478:2	./.	0/1:37,35:33:72:0.486:2
chr5	145439647	rs2962525	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:27:32:1.00:2	0/1:0,20:26:20:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,35:28:35:1.00:2	0/1:0,33:28:33:1.00:2	0/1:0,35:28:35:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,18:28:18:1.00:2	0/1:0,12:27:12:1.00:2	0/1:0,22:28:22:1.00:2
chr5	145442133	rs11435	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,23:30:49:0.469:2	0/1:16,14:31:30:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	145442203	rs1056149	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,48:32:49:0.980:2	0/1:0,25:31:25:1.00:2	0/1:3,3:31:6:0.500:2	0/1:0,45:32:45:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,50:31:50:1.00:2	0/1:34,29:32:63:0.460:2	0/1:40,28:33:68:0.412:2	0/1:14,23:32:37:0.622:2	./.	0/1:38,18:33:56:0.321:2
chr5	145477855	rs6877277	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:28,17:32:45:0.378:2	0/1:15,11:32:26:0.423:2	0/1:5,3:33:8:0.375:2	./.	./.	./.	0/1:38,27:32:65:0.415:2	./.	./.	0/1:22,26:30:48:0.542:2	0/1:20,34:31:54:0.630:2
chr5	145483844	rs12187913	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:62,41:32:103:0.398:2	0/1:21,24:33:45:0.533:2	0/1:5,9:32:14:0.643:2	./.	./.	./.	0/1:57,49:32:106:0.462:2	./.	./.	0/1:68,44:32:112:0.393:2	0/1:86,65:32:152:0.430:2
chr5	145493714	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:31:102:0.039:2	./.	./.	./.	./.	./.
chr5	145499996	rs10988	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:39,21:32:60:0.350:2	0/1:19,7:32:26:0.269:2	./.	./.	./.	./.	0/1:21,9:33:30:0.300:2	./.	./.	0/1:22,30:33:52:0.577:2	0/1:45,30:33:75:0.400:2
chr5	145506100	rs11540216	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,49:31:143:0.343:2	./.	./.	./.	./.	./.	./.
chr5	145508340	rs2895647	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:62,45:31:107:0.421:2	0/1:34,45:30:79:0.570:2	0/1:8,13:30:21:0.619:2	./.	./.	./.	0/1:61,35:31:96:0.365:2	./.	./.	0/1:43,32:30:75:0.427:2	0/1:53,60:32:113:0.531:2
chr5	145508636	rs35977062	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:32,36:32:68:0.529:2	0/1:14,12:31:26:0.462:2	./.	./.	./.	./.	0/1:42,34:31:76:0.447:2	./.	./.	0/1:29,22:32:51:0.431:2	0/1:45,45:32:90:0.500:2
chr5	145508637	rs61732382	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:32,36:31:68:0.529:2	0/1:13,12:30:25:0.480:2	./.	./.	./.	./.	0/1:43,34:29:77:0.442:2	./.	./.	0/1:30,21:30:51:0.412:2	0/1:45,44:31:89:0.494:2
chr5	145509631	rs112912805	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,30:32:88:0.341:2	./.	./.	./.	./.	./.	./.	./.
chr5	145519821	rs17493851	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:36,30:32:66:0.455:2	0/1:22,29:31:51:0.569:2	0/1:3,4:30:7:0.571:2	./.	./.	./.	0/1:49,40:31:89:0.449:2	./.	./.	0/1:34,37:30:71:0.521:2	0/1:68,52:32:120:0.433:2
chr5	145523105	rs11540217	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:9,18:33:27:0.667:2	0/1:10,8:32:18:0.444:2	./.	./.	./.	./.	0/1:18,14:33:32:0.438:2	./.	./.	0/1:20,14:32:34:0.412:2	0/1:9,18:32:27:0.667:2
chr5	145539996	rs11540214	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:37,51:33:88:0.580:2	0/1:18,14:33:32:0.438:2	./.	./.	./.	./.	0/1:18,24:33:42:0.571:2	./.	./.	0/1:29,16:32:45:0.356:2	0/1:52,50:33:102:0.490:2
chr5	145543972	rs3763373	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:48,28:31:76:0.368:2	0/1:18,23:31:41:0.561:2	0/1:5,7:31:12:0.583:2	./.	./.	./.	0/1:38,28:31:66:0.424:2	./.	./.	0/1:41,24:32:66:0.369:2	0/1:79,47:32:126:0.373:2
chr5	145602983	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:30:68:0.059:2	./.
chr5	145609304	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,14:31:35:0.400:2	./.
chr5	145650597	rs17104362	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,60:33:130:0.462:2	./.	./.	./.	./.	./.	./.
chr5	145882979	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:33:100:0.040:2	./.	./.
chr5	145887453	rs12186370	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,7:32:15:0.467:2	./.	0/1:16,15:31:31:0.484:2	./.	./.	./.	./.	0/1:0,38:32:38:1.00:2	./.
chr5	145890028	rs4705103	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:28:28:1.00:2	0/1:0,22:28:22:1.00:2	0/1:0,4:29:4:1.00:2	0/1:1,56:29:57:0.982:2	0/1:0,33:27:33:1.00:2	0/1:0,52:28:52:1.00:2	0/1:0,45:27:45:1.00:2	0/1:0,42:27:42:1.00:2	0/1:0,45:29:45:1.00:2	0/1:0,23:27:24:1.00:2	0/1:0,50:29:50:1.00:2
chr5	145894896	rs7709485	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,48:33:91:0.527:2	./.	0/1:70,24:32:94:0.255:2	0/1:1,105:33:106:0.991:2	./.	0/1:52,55:31:107:0.514:2
chr5	145894968	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:32:120:0.033:2	./.	./.	./.	./.
chr5	145895165	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,4:34:148:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr5	145895558	rs17104742	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,12:33:18:0.667:2	./.	0/1:21,40:32:61:0.656:2	./.	./.	./.	./.	0/1:0,58:33:58:1.00:2	./.
chr5	145979938	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:36:108:0.037:2	./.	./.
chr5	146077647	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:29:92:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	146619206	rs4705132	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,40:32:69:0.580:2	0/1:26,31:32:57:0.544:2	./.	0/1:0,65:33:65:1.00:2	0/1:47,21:33:68:0.309:2	0/1:0,63:32:63:1.00:2	0/1:33,27:32:60:0.450:2	0/1:41,28:32:69:0.406:2	0/1:51,41:33:92:0.446:2	./.	0/1:63,44:32:108:0.411:2
chr5	146730636	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:34:192:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	146780273	rs10515587	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,62:30:167:0.371:2	./.	./.	0/1:98,70:30:168:0.417:2	./.	./.	0/1:75,59:30:134:0.440:2
chr5	146971253	rs7449194	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,110:31:110:1.00:2	0/1:0,106:31:106:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,84:30:84:1.00:2	0/1:0,64:30:64:1.00:2	0/1:0,90:30:90:1.00:2	0/1:0,71:30:71:1.00:2	0/1:1,76:30:77:0.987:2	0/1:0,100:32:100:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,116:31:116:1.00:2
chr5	146971279	rs77301397	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:35,53:32:88:0.602:2	0/1:14,37:31:51:0.725:2	./.	0/1:23,35:32:58:0.603:2	./.	./.	./.	./.	./.	0/1:24,40:32:64:0.625:2	./.
chr5	147012291	rs3763094	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:49,32:32:81:0.395:2	0/1:26,15:31:41:0.366:2	./.	0/1:34,44:31:78:0.564:2	./.	./.	./.	./.	./.	0/1:47,37:31:84:0.440:2	./.
chr5	147015776	rs144168301	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,32:32:76:0.421:2	0/1:9,23:33:32:0.719:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	147024476	rs2116766	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,53:31:137:0.387:2	0/1:41,33:31:74:0.446:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	147024509	rs2116765	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:76,58:31:134:0.433:2	0/1:44,29:32:73:0.397:2	./.	0/1:120,57:32:177:0.322:2	./.	./.	./.	./.	./.	0/1:81,43:30:124:0.347:2	./.
chr5	147281308	rs11956228	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,6:32:34:0.176:2	./.	./.	./.	./.	0/1:111,80:31:191:0.419:2	0/1:107,84:32:191:0.440:2	./.	./.
chr5	147286013	rs7722926	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,17:31:41:0.415:2	./.	./.	./.	./.	0/1:116,77:32:193:0.399:2	0/1:102,94:32:196:0.480:2	./.	./.
chr5	147286054	rs2250145	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:87,69:31:156:0.442:2	0/1:69,61:31:130:0.469:2	./.	0/1:93,58:31:151:0.384:2	0/1:2,149:30:151:0.987:2	./.	0/1:90,63:31:153:0.412:2	./.	0/1:94,82:32:176:0.466:2	0/1:81,72:31:153:0.471:2	0/1:1,149:31:150:0.993:2
chr5	147466001	rs17860502	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,15:31:56:0.268:2	./.
chr5	147475386	rs6892205	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:59,55:30:114:0.482:2	0/1:51,44:28:95:0.463:2	0/1:0,15:29:15:1.00:2	./.	0/1:41,33:29:74:0.446:2	0/1:1,94:29:95:0.989:2	0/1:54,33:29:87:0.379:2	0/1:75,40:29:115:0.348:2	0/1:113,62:30:175:0.354:2	0/1:72,22:30:94:0.234:2	0/1:0,158:29:158:1.00:2
chr5	147477551	rs34482796	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:15,12:32:27:0.444:2	0/1:22,8:31:30:0.267:2	0/1:0,5:31:5:1.00:2	./.	0/1:21,17:31:38:0.447:2	0/1:0,45:31:45:1.00:2	0/1:24,24:32:48:0.500:2	0/1:27,19:31:46:0.413:2	0/1:33,29:33:62:0.468:2	0/1:17,10:31:27:0.370:2	0/1:0,56:32:56:1.00:2
chr5	147480027	rs2303063	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:25,22:32:47:0.468:2	0/1:21,7:32:28:0.250:2	0/1:0,7:31:7:1.00:2	./.	0/1:29,18:30:47:0.383:2	0/1:2,66:31:68:0.971:2	0/1:37,23:31:60:0.383:2	0/1:44,26:32:70:0.371:2	0/1:41,20:32:61:0.328:2	0/1:26,21:31:47:0.447:2	0/1:1,42:32:43:0.977:2
chr5	147480080	rs2303064	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,41:33:71:0.577:2	0/1:26,28:32:54:0.519:2	./.
chr5	147480112	rs2303065	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:28,21:28:49:0.429:2	0/1:13,9:29:22:0.409:2	0/1:0,7:30:7:1.00:2	./.	0/1:40,20:28:60:0.333:2	0/1:1,51:28:52:0.981:2	0/1:30,21:29:51:0.412:2	0/1:36,17:29:53:0.321:2	0/1:32,21:29:53:0.396:2	0/1:20,23:28:43:0.535:2	0/1:0,41:28:41:1.00:2
chr5	147480955	rs2303067	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:105,62:32:167:0.371:2	0/1:75,54:33:129:0.419:2	0/1:0,18:33:18:1.00:2	./.	0/1:79,51:31:130:0.392:2	0/1:2,185:31:187:0.989:2	0/1:78,66:32:144:0.458:2	0/1:101,59:32:160:0.369:2	0/1:105,79:32:184:0.429:2	0/1:96,74:31:170:0.435:2	0/1:3,164:32:167:0.982:2
chr5	147481430	rs6896303	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,22:33:47:0.468:2	0/1:11,26:31:37:0.703:2	0/1:0,10:32:10:1.00:2	0/1:52,3:34:55:0.055:2	0/1:8,18:33:26:0.692:2	0/1:0,57:32:57:1.00:2	0/1:29,25:33:54:0.463:2	0/1:38,36:33:74:0.486:2	0/1:28,28:32:56:0.500:2	0/1:28,27:31:55:0.491:2	0/1:0,48:32:48:1.00:2
chr5	147486677	rs880687	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:43,45:31:88:0.511:2	0/1:31,22:31:53:0.415:2	0/1:0,11:31:11:1.00:2	./.	0/1:77,70:31:149:0.476:2	0/1:0,110:31:110:1.00:2	0/1:59,67:32:126:0.532:2	0/1:54,59:31:113:0.522:2	0/1:77,63:32:140:0.450:2	0/1:50,31:31:81:0.383:2	0/1:0,104:32:104:1.00:2
chr5	147488367	rs2303071	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:71,70:31:141:0.496:2	0/1:44,34:31:78:0.436:2	0/1:0,7:31:7:1.00:2	./.	0/1:52,38:31:90:0.422:2	0/1:0,135:31:135:1.00:2	0/1:69,46:31:115:0.400:2	0/1:102,69:32:171:0.404:2	0/1:78,74:32:152:0.487:2	0/1:79,51:31:130:0.392:2	0/1:1,174:31:175:0.994:2
chr5	147492461	rs17718737	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,19:29:33:0.576:2	./.
chr5	147498019	rs3777134	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:19,22:33:41:0.537:2	0/1:12,8:33:20:0.400:2	0/1:0,2:33:2:1.00:2	./.	0/1:1,38:32:39:0.974:2	0/1:1,32:31:33:0.970:2	0/1:19,18:32:37:0.486:2	0/1:28,22:33:51:0.440:2	0/1:28,16:33:44:0.364:2	0/1:31,10:33:41:0.244:2	0/1:2,37:33:39:0.949:2
chr5	147499616	rs17704908	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:45,33:31:78:0.423:2	0/1:30,20:31:50:0.400:2	0/1:0,10:30:10:1.00:2	./.	0/1:0,45:30:45:1.00:2	0/1:0,68:31:68:1.00:2	0/1:29,17:31:46:0.370:2	0/1:57,34:30:91:0.374:2	0/1:53,32:31:85:0.376:2	0/1:37,33:31:70:0.471:2	0/1:0,74:31:74:1.00:2
chr5	147499670	rs33920397	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:32,25:31:57:0.439:2	0/1:22,16:31:38:0.421:2	0/1:0,8:29:8:1.00:2	./.	0/1:0,29:30:29:1.00:2	0/1:0,55:30:55:1.00:2	0/1:24,15:30:39:0.385:2	0/1:38,25:30:63:0.397:2	0/1:32,29:31:61:0.475:2	0/1:23,17:30:40:0.425:2	0/1:0,40:31:40:1.00:2
chr5	147499891	rs2303070	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,102:30:185:0.551:2	./.	./.
chr5	147505116	rs3764930	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:113,77:33:191:0.405:2	0/1:60,44:33:104:0.423:2	0/1:0,17:32:17:1.00:2	./.	0/1:0,175:32:175:1.00:2	0/1:0,191:32:191:1.00:2	0/1:101,94:33:195:0.482:2	0/1:107,85:33:192:0.443:2	0/1:104,76:34:180:0.422:2	0/1:91,93:33:184:0.505:2	0/1:0,179:33:180:1.00:2
chr5	147506593	rs17705005	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,41:29:118:0.347:2	./.
chr5	147510866	rs2400478	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:19,40:31:59:0.678:2	0/1:15,9:32:24:0.375:2	0/1:0,9:33:9:1.00:2	./.	0/1:0,62:32:62:1.00:2	0/1:0,67:33:67:1.00:2	0/1:32,19:32:51:0.373:2	0/1:55,43:33:98:0.439:2	0/1:36,35:33:71:0.493:2	0/1:31,32:33:64:0.508:2	0/1:0,94:33:94:1.00:2
chr5	147516598	rs4349706	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,16:34:36:0.444:2	0/1:4,6:32:10:0.600:2	./.	0/1:0,19:32:19:1.00:2	0/1:29,3:34:32:0.094:2	./.	0/1:13,16:33:29:0.552:2	0/1:14,15:32:29:0.517:2	0/1:20,12:33:32:0.375:2	0/1:16,6:33:22:0.273:2	./.
chr5	147554889	rs10052031	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:104,68:33:172:0.395:2	0/1:50,50:32:100:0.500:2	./.	0/1:4,164:33:168:0.976:2	0/1:47,36:32:83:0.434:2	0/1:76,69:32:145:0.476:2	0/1:55,45:32:100:0.450:2	0/1:58,81:32:141:0.583:2	0/1:0,163:33:163:1.00:2	0/1:3,143:33:146:0.979:2	0/1:95,92:33:187:0.492:2
chr5	147585561	rs112044445	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,8:34:135:0.059:2	./.	./.	./.	./.
chr5	147593497	rs12186491	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:32:88:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,106:32:107:1.00:2	0/1:1,109:31:110:0.991:2	0/1:1,167:31:168:0.994:2	0/1:71,46:31:117:0.393:2	0/1:4,126:32:130:0.969:2	0/1:2,162:32:164:0.988:2	0/1:76,80:33:156:0.513:2	0/1:55,61:32:116:0.526:2
chr5	147665562	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,4:31:114:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr5	147785852	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,4:31:74:0.054:2	./.	./.	./.	./.	./.	./.
chr5	147805120	rs10043775	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,56:32:111:0.505:2	0/1:55,33:33:88:0.375:2	./.	./.	./.	./.
chr5	147806792	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:31:102:0.039:2	./.	./.
chr5	147817926	rs371555180	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,21:31:51:0.412:2	0/1:15,11:30:26:0.423:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	147856333	rs7733088	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,34:31:68:0.500:2	0/1:33,25:31:58:0.431:2	0/1:38,33:31:71:0.465:2	0/1:33,15:33:48:0.313:2	0/1:31,26:32:57:0.456:2	./.	./.	0/1:59,50:32:110:0.459:2
chr5	147889348	rs55727780	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,88:33:180:0.489:2	./.	./.	./.	./.
chr5	148016537	rs17639735	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:114,81:29:195:0.415:2	./.	./.	./.	0/1:104,92:30:196:0.469:2	./.	./.
chr5	148206440	rs1042713	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,84:29:159:0.532:2	0/1:101,96:28:197:0.487:2	./.	0/1:98,100:29:198:0.505:2	./.	0/1:73,74:30:147:0.503:2	0/1:55,57:29:112:0.509:2	./.
chr5	148206473	rs1042714	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:88,61:31:149:0.409:2	0/1:48,44:32:92:0.478:2	./.	0/1:91,98:32:189:0.519:2	0/1:96,96:33:192:0.500:2	0/1:104,84:33:188:0.447:2	0/1:0,192:33:192:1.00:2	0/1:94,95:33:189:0.503:2	0/1:0,184:33:184:1.00:2	0/1:84,104:33:188:0.553:2	./.
chr5	148206646	rs1042717	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,61:30:124:0.492:2	0/1:84,62:31:146:0.425:2	0/1:69,66:31:135:0.489:2	0/1:65,71:32:136:0.522:2	./.	./.
chr5	148206885	rs1800888	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,41:32:79:0.519:2	./.	./.
chr5	148206917	rs1042718	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,56:31:123:0.459:2	./.	./.	0/1:94,73:32:167:0.437:2	0/1:76,76:32:152:0.500:2	0/1:53,74:32:127:0.583:2	./.	./.
chr5	148207447	rs1042719	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,21:33:62:0.339:2	0/1:28,20:32:48:0.417:2	0/1:0,55:32:56:1.00:2	./.	0/1:35,25:32:61:0.417:2	0/1:14,35:33:49:0.714:2	0/1:12,17:33:29:0.586:2	./.
chr5	148207633	rs1042720	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,19:30:39:0.487:2	0/1:13,20:31:33:0.606:2	./.	0/1:23,29:30:52:0.558:2	0/1:23,18:30:41:0.439:2	0/1:0,44:29:44:1.00:2	0/1:51,4:29:55:0.073:2	0/1:22,23:30:46:0.511:2	0/1:28,49:31:77:0.636:2	0/1:28,19:29:47:0.404:2	./.
chr5	148208014	rs8192451	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,56:33:124:0.452:2	./.
chr5	148386525	rs6871030	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,73:33:148:0.493:2	0/1:84,70:33:155:0.455:2	0/1:77,42:32:119:0.353:2	0/1:63,60:33:123:0.488:2	0/1:2,141:32:143:0.986:2	0/1:66,88:33:154:0.571:2	./.	./.
chr5	148388420	rs55853803	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,20:31:62:0.323:2	./.	./.	./.	./.	./.	./.	./.
chr5	148407487	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:33:53:0.075:2	./.	./.	./.	./.
chr5	148407708	rs1432794	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,15:32:43:0.349:2	0/1:17,14:31:31:0.452:2	0/1:0,9:32:9:1.00:2	0/1:1,42:32:43:0.977:2	0/1:1,53:32:54:0.981:2	0/1:30,22:32:52:0.423:2	0/1:1,48:32:49:0.980:2	0/1:0,47:32:47:1.00:2	0/1:0,60:31:60:1.00:2	0/1:1,33:33:34:0.971:2	0/1:0,49:31:49:1.00:2
chr5	148407893	rs6875902	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,13:31:21:0.619:2	./.	0/1:4,15:30:19:0.789:2	0/1:7,11:32:18:0.611:2	./.	0/1:20,6:31:26:0.231:2	./.	./.
chr5	148408101	rs1432793	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,24:32:56:0.429:2	0/1:21,36:32:57:0.632:2	0/1:29,18:32:47:0.383:2	0/1:37,21:31:58:0.362:2	0/1:2,55:33:57:0.965:2	0/1:34,33:33:67:0.493:2	./.	./.
chr5	148422281	rs80359890	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,70:32:128:0.547:2	./.	./.	./.	./.	./.
chr5	148610275	rs373722860	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:33:108:0.037:2
chr5	148610276	rs2918265	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,13:30:13:1.00:2	./.	0/1:0,43:31:43:1.00:2	0/1:0,57:31:57:1.00:2	0/1:44,21:30:65:0.323:2	0/1:54,29:31:83:0.349:2	./.	./.	0/1:58,47:31:105:0.448:2
chr5	148617162	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:32:87:0.047:2	./.
chr5	148618835	rs114548064	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,59:31:122:0.484:2	0/1:66,55:30:122:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	148619402	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,7:31:93:0.075:2	./.	./.	./.	./.	./.
chr5	148626067	rs61999264	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,31:32:78:0.397:2	./.	./.	./.	./.
chr5	148681982	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,5:23:13:0.385:2	./.
chr5	148687152	rs17854053	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,31:33:60:0.517:2	0/1:27,14:33:41:0.341:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,21:33:44:0.477:2
chr5	148699951	rs17642594	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:38,34:33:72:0.472:2	0/1:21,34:33:55:0.618:2	./.	./.	0/1:71,66:32:137:0.482:2	./.	./.	./.	0/1:75,52:33:127:0.409:2	./.	0/1:84,50:32:134:0.373:2
chr5	148747902	rs4705336	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,31:31:77:0.403:2	0/1:52,45:30:97:0.464:2	0/1:26,39:29:65:0.600:2	./.	0/1:23,54:29:77:0.701:2	./.	./.	./.
chr5	148904638	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:159,4:32:163:0.025:2	./.	./.	./.	./.	./.	./.
chr5	148904662	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:134,4:31:138:0.029:2	./.	./.	./.	./.	./.	./.
chr5	148989122	rs2400891	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,68:32:70:0.971:2	0/1:0,36:31:36:1.00:2	0/1:0,18:31:18:1.00:2	0/1:71,42:32:113:0.372:2	0/1:58,37:31:95:0.389:2	0/1:54,49:31:103:0.476:2	0/1:1,90:31:91:0.989:2	0/1:91,42:32:133:0.316:2	0/1:0,89:32:89:1.00:2	./.	0/1:1,97:32:98:0.990:2
chr5	149001551	rs4629585	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,84:32:178:0.472:2	0/1:91,91:32:182:0.500:2	0/1:2,174:32:176:0.989:2	0/1:93,83:32:176:0.472:2	0/1:91,77:32:168:0.458:2	./.	0/1:1,134:32:135:0.993:2	./.
chr5	149003626	rs113997100	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	149003627	rs55915030	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,36:29:87:0.414:2	./.	./.	./.	./.
chr5	149006640	rs9324624	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,87:32:87:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,4:32:4:1.00:2	./.	0/1:49,62:32:111:0.559:2	./.	0/1:75,43:32:118:0.364:2	0/1:56,43:32:99:0.434:2	0/1:1,97:33:98:0.990:2	./.	0/1:0,103:32:103:1.00:2
chr5	149006726	rs7732714	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,51:29:101:0.505:2	./.	./.	./.	./.
chr5	149008403	rs1056993	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:33:38:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,9:33:9:1.00:2	0/1:24,23:32:47:0.489:2	0/1:35,55:33:90:0.611:2	./.	0/1:0,56:33:56:1.00:2	0/1:41,24:32:65:0.369:2	0/1:0,52:34:52:1.00:2	./.	0/1:0,28:31:28:1.00:2
chr5	149008467	rs3733662	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,20:29:43:0.465:2	./.	./.	./.	./.	./.	./.	./.
chr5	149008521	rs1135093	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:30:27:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,5:31:5:1.00:2	0/1:21,14:30:35:0.400:2	0/1:14,12:30:26:0.462:2	./.	0/1:1,29:30:30:0.967:2	0/1:13,6:29:19:0.316:2	0/1:0,20:31:20:1.00:2	./.	0/1:0,27:31:27:1.00:2
chr5	149200043	rs32588	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,4:31:21:0.190:2	./.	./.	./.	./.	./.	./.
chr5	149212243	rs7732671	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:53,72:33:126:0.576:2	0/1:52,35:32:87:0.402:2	./.	./.	./.	./.	./.	./.	./.	0/1:83,70:32:153:0.458:2	./.
chr5	149212430	rs45520937	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,18:32:37:0.486:2	./.	./.	./.	./.	./.
chr5	149212471	rs17572019	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:17,12:31:29:0.414:2	0/1:21,14:30:35:0.400:2	./.	./.	./.	./.	./.	./.	./.	0/1:15,13:30:28:0.464:2	./.
chr5	149212510	rs11959820	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	149212614	rs115557257	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,27:31:67:0.403:2	./.	./.	./.	0/1:35,35:29:70:0.500:2	./.	./.	./.
chr5	149212800	rs32577	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,43:29:88:0.489:2	./.	./.	./.	./.	./.	./.
chr5	149216256	rs45588534	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,34:30:63:0.540:2	./.	./.	./.	./.	./.
chr5	149216304	rs45543631	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,31:31:54:0.574:2	./.	./.	./.	./.	./.
chr5	149216595	rs201110143	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:47,7:22:54:0.130:2	./.	./.	0/1:92,17:13:109:0.156:2	0/1:106,16:11:122:0.131:2	0/1:89,16:13:106:0.152:2	0/1:128,19:11:148:0.129:2	./.	0/1:79,16:13:95:0.168:2	./.	./.
chr5	149226992	rs76206609	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,69:31:163:0.423:2	./.	./.
chr5	149242788	rs4705390	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,78:31:169:0.462:2	./.	./.	./.	./.	./.
chr5	149245754	rs17110644	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,31:29:67:0.463:2	./.	./.	./.	./.	./.
chr5	149247738	rs6864267	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,43:32:89:0.483:2	./.	./.
chr5	149265875	rs61733360	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,58:30:127:0.457:2	./.	./.	./.	./.	./.
chr5	149276063	rs17711594	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,26:30:74:0.351:2	./.	./.	./.
chr5	149283265	rs370250500	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:33:68:0.059:2
chr5	149323772	rs2277926	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:41,20:31:61:0.328:2	0/1:20,25:30:45:0.556:2	./.	0/1:0,53:30:53:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr5	149323906	rs2277925	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:24,21:30:45:0.467:2	0/1:18,24:29:42:0.571:2	./.	0/1:2,81:30:83:0.976:2	./.	./.	./.	./.	./.	./.	./.
chr5	149360877	rs30832	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,42:32:42:1.00:2	0/1:1,39:32:40:0.975:2	0/1:0,61:34:61:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,77:32:77:1.00:2
chr5	149361221	rs3776070	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,11:32:26:0.423:2	0/1:9,11:31:20:0.550:2	./.	0/1:7,8:32:15:0.533:2	0/1:2,15:31:17:0.882:2	0/1:15,5:29:20:0.250:2	./.	./.	0/1:0,32:32:32:1.00:2	./.	0/1:15,11:32:26:0.423:2
chr5	149374932	rs10875553	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:104,87:29:191:0.455:2	0/1:75,72:28:148:0.490:2	./.	0/1:2,171:29:173:0.988:2	0/1:1,184:28:185:0.995:2	0/1:0,188:29:189:1.00:2	./.	0/1:113,81:30:194:0.418:2	0/1:1,180:30:181:0.994:2	0/1:0,173:29:173:1.00:2	0/1:3,182:30:185:0.984:2
chr5	149390148	rs2241698	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,14:30:36:0.389:2	0/1:7,9:31:16:0.563:2	./.	0/1:19,13:29:32:0.406:2	0/1:0,22:28:22:1.00:2	0/1:21,13:28:34:0.382:2	./.	./.	0/1:0,29:29:29:1.00:2	./.	0/1:23,22:31:45:0.489:2
chr5	149406271	rs6579767	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:115,79:32:194:0.407:2	0/1:84,51:32:135:0.378:2	0/1:9,18:31:27:0.667:2	0/1:1,190:31:191:0.995:2	0/1:0,127:30:127:1.00:2	0/1:112,83:31:195:0.426:2	./.	0/1:124,70:31:194:0.361:2	0/1:0,189:31:189:1.00:2	0/1:0,185:31:186:1.00:2	0/1:1,188:32:189:0.995:2
chr5	149410321	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,5:31:199:0.025:2	./.	./.	./.
chr5	149421502	rs2276982	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:55,54:32:109:0.495:2	0/1:23,26:31:49:0.531:2	./.	0/1:58,69:33:127:0.543:2	0/1:2,93:32:95:0.979:2	0/1:52,60:32:112:0.536:2	./.	./.	0/1:0,114:33:114:1.00:2	./.	0/1:49,54:32:103:0.524:2
chr5	149449827	rs34951517	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,18:32:44:0.409:2	0/1:16,12:32:28:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	149450132	rs10079250	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,6:30:18:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	149457678	rs2228422	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:193,4:33:197:0.020:2	./.	./.	./.	0/1:109,87:30:196:0.444:2	./.	0/1:0,186:31:187:1.00:2	0/1:96,92:32:188:0.489:2
chr5	149460343	rs17652007	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,59:33:132:0.447:2	./.	./.
chr5	149460553	rs216123	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,87:30:196:0.444:2	./.	./.	./.	0/1:76,69:32:145:0.476:2	0/1:0,108:30:108:1.00:2	./.
chr5	149495395	rs246388	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,25:32:25:1.00:2	0/1:0,14:31:14:1.00:2	./.	0/1:14,18:31:32:0.563:2	0/1:1,20:32:21:0.952:2	0/1:7,6:29:13:0.462:2	0/1:13,3:29:16:0.188:2	0/1:13,16:30:29:0.552:2	0/1:11,15:32:26:0.577:2	./.	0/1:29,9:29:38:0.237:2
chr5	149497228	rs2228440	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,18:32:35:0.514:2	0/1:14,14:32:28:0.500:2	./.	0/1:27,25:32:52:0.481:2	0/1:20,14:32:34:0.412:2	0/1:22,24:32:46:0.522:2	./.	0/1:36,26:31:62:0.419:2	./.	./.	0/1:30,36:31:66:0.545:2
chr5	149499672	rs246395	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:20,13:33:33:0.394:2	0/1:9,10:33:19:0.526:2	./.	./.	0/1:14,27:33:41:0.659:2	./.	0/1:18,27:33:45:0.600:2	./.	0/1:24,22:34:46:0.478:2	./.	./.
chr5	149501531	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:32:115:0.035:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	149509446	rs41287110	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,100:31:176:0.568:2	./.	./.	./.	./.	./.	./.
chr5	149513186	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,5:30:196:0.026:2	./.	./.	./.
chr5	149583300	rs2240793	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:75,91:32:166:0.548:2	0/1:59,32:32:91:0.352:2	0/1:0,32:33:32:1.00:2	0/1:0,180:33:180:1.00:2	0/1:94,87:32:181:0.481:2	0/1:0,180:33:180:1.00:2	0/1:100,88:33:188:0.468:2	0/1:105,81:33:186:0.435:2	0/1:88,87:32:175:0.497:2	0/1:113,72:33:186:0.389:2	0/1:87,95:32:182:0.522:2
chr5	149583336	rs2240794	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,75:32:135:0.560:2	0/1:44,28:32:72:0.389:2	0/1:0,21:32:21:1.00:2	0/1:0,123:32:123:1.00:2	0/1:71,69:31:140:0.493:2	0/1:0,134:32:134:1.00:2	0/1:77,82:31:159:0.516:2	0/1:78,71:32:149:0.477:2	0/1:66,54:32:120:0.450:2	0/1:91,47:32:139:0.341:2	0/1:68,58:32:127:0.460:2
chr5	149584114	rs75054895	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:68,6:22:74:0.081:2	./.	./.	0/1:84,21:12:105:0.200:2	./.	0/1:105,19:11:124:0.153:2	0/1:110,27:12:137:0.197:2	0/1:125,22:11:147:0.150:2	./.	./.	0/1:86,15:12:101:0.149:2
chr5	149584405	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,4:30:86:0.047:2	./.	./.	./.	./.	./.	./.	./.
chr5	149585025	rs4705426	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:33:42:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,69:33:69:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,51:33:51:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,51:33:51:1.00:2
chr5	149585058	rs142615684	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:34:91:0.044:2	./.	./.	./.
chr5	149602280	rs55976097	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,34:32:56:0.607:2	0/1:11,12:32:23:0.522:2	0/1:2,2:34:4:0.500:2	0/1:34,46:33:80:0.575:2	./.	./.	0/1:40,38:33:78:0.487:2	./.	./.	0/1:21,20:33:41:0.488:2	0/1:25,21:31:46:0.457:2
chr5	149602608	rs2241694	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:29:52:1.00:2	0/1:0,36:28:36:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,91:29:91:1.00:2	0/1:0,34:28:34:1.00:2	0/1:0,77:29:77:1.00:2	0/1:2,46:29:48:0.958:2	0/1:0,56:30:56:1.00:2	0/1:0,87:29:87:1.00:2	0/1:0,49:29:49:1.00:2	0/1:0,32:28:32:1.00:2
chr5	149602752	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:30:111:0.036:2	./.	./.	./.
chr5	149644597	rs891938	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:32:45:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,79:32:79:1.00:2	0/1:1,71:32:72:0.986:2	0/1:0,83:32:83:1.00:2	0/1:0,55:33:55:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,70:32:70:1.00:2
chr5	149677104	rs112583032	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,11:32:32:0.344:2	./.	./.
chr5	149677818	rs77943970	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:37,34:31:71:0.479:2	0/1:16,22:31:38:0.579:2	./.	./.	./.	./.	./.	0/1:44,61:30:105:0.581:2	./.	./.	./.
chr5	149677841	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,6:24:89:0.067:2	./.	./.	./.	./.
chr5	149677851	rs6579784	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:29:51:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,8:26:8:1.00:2	0/1:0,64:30:65:1.00:2	0/1:0,87:29:87:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,77:29:77:1.00:2	0/1:0,66:29:66:1.00:2	0/1:0,64:30:64:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,44:29:44:1.00:2
chr5	149681670	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:27:51:0.078:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	149747465	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:32:104:0.038:2	./.	./.	./.	./.	./.
chr5	149754991	rs2071238	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:31:11:0.364:2	./.	0/1:18,22:30:41:0.550:2	./.	./.	./.	./.	./.	./.
chr5	149755340	rs7701163	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:30:6:0.500:2	./.	0/1:27,36:30:63:0.571:2	./.	./.	./.	./.	./.	./.
chr5	149755421	rs2071239	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:29:12:0.250:2	./.	0/1:59,65:28:124:0.524:2	./.	./.	./.	./.	./.	./.
chr5	149758583	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,5:30:75:0.067:2	./.
chr5	149759096	rs7713638	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,13:30:26:0.500:2	./.	./.	./.	./.	./.	./.
chr5	149763305	rs7715100	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:30:12:0.667:2	./.	0/1:40,33:30:73:0.452:2	./.	./.	./.	./.	./.	./.
chr5	149771535	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,4:33:91:0.044:2	./.	./.	./.	./.	./.	./.	./.
chr5	149772280	rs1136103	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,9:27:25:0.360:2	0/1:14,13:28:27:0.481:2	0/1:15,10:29:25:0.400:2	0/1:22,14:29:36:0.389:2	0/1:23,11:30:35:0.324:2	./.	./.	./.
chr5	149772360	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,4:32:33:0.121:2	./.
chr5	149776005	rs146509895	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,34:30:96:0.354:2	./.	./.	./.	./.
chr5	149776232	rs15251	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:16,11:28:27:0.407:2	0/1:13,6:31:19:0.316:2	./.	0/1:24,18:30:42:0.429:2	./.	./.	0/1:22,12:29:34:0.353:2	./.	./.	./.	0/1:0,54:29:54:1.00:2
chr5	149776355	rs45491898	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:33,32:31:65:0.492:2	0/1:25,21:32:46:0.457:2	./.	./.	./.	./.	0/1:47,44:33:91:0.484:2	./.	./.	./.	./.
chr5	149826526	rs4841	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,20:32:57:0.351:2	./.	0/1:0,36:31:36:1.00:2	./.
chr5	149907497	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:33:71:0.056:2	./.
chr5	149907533	rs2273235	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:33:7:1.00:2	./.	0/1:48,36:30:84:0.429:2	0/1:42,25:32:67:0.373:2	0/1:49,57:31:107:0.538:2	./.	./.	0/1:43,28:31:71:0.394:2	0/1:29,25:31:54:0.463:2
chr5	149907602	rs2273234	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,14:30:38:0.368:2	0/1:24,16:28:40:0.400:2	0/1:13,15:27:28:0.536:2	./.	./.	0/1:26,6:30:32:0.188:2	0/1:20,5:30:25:0.200:2
chr5	149919739	rs1290147	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:36,41:32:77:0.532:2	0/1:30,26:32:56:0.464:2	0/1:0,11:33:11:1.00:2	./.	0/1:74,55:32:129:0.426:2	0/1:73,60:32:133:0.451:2	./.	./.	0/1:67,48:33:115:0.417:2	0/1:45,42:32:87:0.483:2	0/1:0,88:32:89:1.00:2
chr5	149919778	rs61732050	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:21,29:31:51:0.580:2	0/1:20,18:31:38:0.474:2	./.	0/1:0,71:31:71:1.00:2	./.	./.	./.	0/1:63,55:31:118:0.466:2	0/1:31,42:32:73:0.575:2	./.	./.
chr5	149998029	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:31:151:0.026:2	./.
chr5	150029905	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:35:94:0.043:2	./.	./.
chr5	150051958	rs194134	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,122:32:123:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,190:32:190:1.00:2	0/1:0,190:32:191:1.00:2	0/1:0,187:32:187:1.00:2	0/1:1,196:32:197:0.995:2	0/1:0,191:32:191:1.00:2	0/1:0,181:33:181:1.00:2	0/1:78,61:33:139:0.439:2	0/1:0,127:31:127:1.00:2
chr5	150080010	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:33:141:0.028:2
chr5	150080518	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:30:109:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	150097883	rs11954652	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:33:16:0.563:2	./.	./.	./.	./.	./.	0/1:71,76:34:147:0.517:2	./.	./.
chr5	150110237	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:30:83:0.048:2	./.	./.	./.
chr5	150158164	rs12653537	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,4:32:15:0.267:2	./.	./.	./.	./.	./.	0/1:68,52:32:120:0.433:2	./.	./.
chr5	150158199	rs12653541	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,33:31:87:0.379:2	./.	./.
chr5	150158226	rs12657686	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,13:32:49:0.265:2	./.	./.
chr5	150174959	rs73282209	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,30:32:74:0.405:2	./.	./.	0/1:29,20:32:49:0.408:2	./.
chr5	150227966	rs72553867	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,61:32:145:0.421:2	0/1:57,39:32:96:0.406:2	./.	./.	./.	./.	./.	./.	0/1:93,74:32:167:0.443:2	./.	0/1:92,63:31:155:0.406:2
chr5	150227998	rs10065172	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,66:32:169:0.391:2	./.	./.	0/1:75,48:32:123:0.390:2	./.
chr5	150275787	rs17800771	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,14:32:38:0.368:2	0/1:19,5:31:24:0.208:2	./.	./.	./.	./.	./.	./.	0/1:32,18:32:50:0.360:2	./.	0/1:19,24:32:43:0.558:2
chr5	150425467	rs2233299	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,19:30:42:0.463:2	0/1:25,24:30:49:0.490:2	0/1:33,18:30:51:0.353:2	./.	0/1:41,34:29:75:0.453:2	0/1:32,13:29:46:0.289:2	0/1:10,25:30:35:0.714:2	0/1:16,11:31:27:0.407:2
chr5	150436422	rs52817781	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,55:32:96:0.573:2	./.	./.	./.	./.	./.
chr5	150436503	rs2233290	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,12:30:19:0.632:2	./.	./.	./.	./.	./.	0/1:8,6:31:14:0.429:2	./.
chr5	150436517	rs2233289	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,13:31:20:0.650:2	0/1:6,10:27:16:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	150484787	rs884520	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,87:32:199:0.439:2	./.	./.	./.	./.
chr5	150489390	rs1133202	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,15:31:15:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,2:31:2:1.00:2	0/1:24,8:33:32:0.250:2	0/1:1,10:32:11:0.909:2	0/1:20,9:33:29:0.310:2	0/1:12,14:34:26:0.538:2	0/1:13,5:31:18:0.278:2	0/1:14,6:33:20:0.300:2	0/1:0,13:33:13:1.00:2	0/1:17,5:32:22:0.227:2
chr5	150503872	rs138779149	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	150507809	rs62379666	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,9:34:15:0.600:2	./.	./.	./.	./.
chr5	150516816	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:35:121:0.033:2	./.	./.
chr5	150516887	rs2303034	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,54:28:54:1.00:2	0/1:0,28:27:28:1.00:2	./.	0/1:33,39:28:72:0.542:2	0/1:0,106:28:106:1.00:2	./.	0/1:0,73:30:73:1.00:2	0/1:46,49:28:95:0.516:2	0/1:0,77:29:77:1.00:2	0/1:30,41:28:71:0.577:2	./.
chr5	150518988	rs2228458	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:50,29:31:79:0.367:2	0/1:36,18:30:54:0.333:2	./.	./.	./.	./.	0/1:76,61:31:137:0.445:2	./.	0/1:57,70:33:127:0.551:2	0/1:44,44:32:88:0.500:2	./.
chr5	150563026	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:29:73:0.055:2	./.
chr5	150565008	rs248427	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:27,25:31:52:0.481:2	0/1:14,22:31:36:0.611:2	./.	0/1:32,31:32:63:0.492:2	./.	0/1:0,86:32:86:1.00:2	0/1:41,37:32:78:0.474:2	0/1:34,30:31:64:0.469:2	0/1:49,35:32:84:0.417:2	./.	./.
chr5	150578574	rs3734038	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,41:29:91:0.451:2	./.	0/1:72,52:29:124:0.419:2	./.	./.	./.	0/1:48,57:28:105:0.543:2
chr5	150632832	rs1048719	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,18:29:35:0.514:2	./.	./.	./.	0/1:10,17:27:27:0.630:2	./.
chr5	150639409	rs153477	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:27,15:30:42:0.357:2	0/1:21,19:29:40:0.475:2	0/1:0,7:30:7:1.00:2	./.	0/1:35,25:30:60:0.417:2	0/1:42,24:29:66:0.364:2	0/1:0,70:29:70:1.00:2	0/1:4,75:29:79:0.949:2	0/1:0,54:30:54:1.00:2	./.	0/1:0,66:29:66:1.00:2
chr5	150639439	rs153478	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:30,15:29:45:0.333:2	0/1:23,17:29:40:0.425:2	0/1:0,4:29:4:1.00:2	./.	0/1:37,27:30:64:0.422:2	0/1:1,61:29:62:0.984:2	0/1:1,71:30:72:0.986:2	0/1:3,85:29:88:0.966:2	0/1:0,54:30:54:1.00:2	0/1:26,41:29:67:0.612:2	0/1:0,54:29:54:1.00:2
chr5	150647012	rs1048723	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:37,47:32:84:0.560:2	0/1:33,14:31:47:0.298:2	0/1:0,7:30:7:1.00:2	./.	./.	./.	./.	0/1:74,60:32:134:0.448:2	0/1:1,109:33:110:0.991:2	./.	0/1:0,89:32:89:1.00:2
chr5	150666843	rs6579846	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,58:31:115:0.504:2	0/1:68,60:32:128:0.469:2	./.	0/1:102,93:32:195:0.477:2	./.	0/1:68,64:33:133:0.485:2	./.
chr5	150666933	rs375396	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,60:30:158:0.385:2	0/1:3,152:31:155:0.981:2	0/1:103,70:31:173:0.405:2	./.	./.	./.
chr5	150666962	rs12520516	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,104:32:175:0.594:2	0/1:68,81:32:149:0.544:2	./.	0/1:84,108:32:192:0.563:2	./.	0/1:65,56:31:121:0.463:2	./.
chr5	150666999	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:32:146:0.027:2
chr5	150667016	rs978012	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,36:33:69:0.522:2	0/1:13,19:32:32:0.594:2	0/1:0,13:33:13:1.00:2	0/1:64,75:33:139:0.540:2	0/1:65,49:33:114:0.430:2	0/1:58,62:32:120:0.517:2	./.	0/1:72,85:33:157:0.541:2	0/1:0,110:34:110:1.00:2	0/1:40,38:33:78:0.487:2	0/1:70,67:34:138:0.489:2
chr5	150696447	rs369907	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:32,27:32:59:0.458:2	0/1:17,13:32:30:0.433:2	0/1:0,8:30:8:1.00:2	./.	0/1:47,21:31:68:0.309:2	0/1:1,67:32:68:0.985:2	0/1:36,46:31:82:0.561:2	0/1:1,83:32:84:0.988:2	0/1:1,72:33:73:0.986:2	0/1:30,29:32:59:0.492:2	0/1:37,25:32:62:0.403:2
chr5	150696498	rs428064	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:36,34:31:70:0.486:2	0/1:18,12:31:30:0.400:2	0/1:6,6:31:12:0.500:2	./.	0/1:74,32:31:106:0.302:2	0/1:45,37:31:82:0.451:2	./.	0/1:2,100:32:102:0.980:2	0/1:0,80:32:80:1.00:2	0/1:32,35:31:67:0.522:2	./.
chr5	150696540	rs431240	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:38,34:32:72:0.472:2	0/1:17,13:32:30:0.433:2	0/1:0,7:30:7:1.00:2	./.	0/1:85,35:31:120:0.292:2	0/1:0,82:31:82:1.00:2	0/1:58,49:32:107:0.458:2	0/1:2,112:31:114:0.982:2	0/1:0,73:32:73:1.00:2	0/1:47,37:32:84:0.440:2	0/1:55,46:32:102:0.455:2
chr5	150704879	rs147978124	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,29:33:69:0.420:2	0/1:22,13:32:35:0.371:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	150714902	rs371901373	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,43:30:79:0.544:2	./.	./.	./.	./.	./.	./.	./.
chr5	150723747	rs77739145	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,51:32:124:0.411:2	./.	./.	./.	./.	./.	./.	./.
chr5	150723806	rs192192	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,34:33:84:0.405:2	0/1:40,30:33:70:0.429:2	0/1:0,6:31:6:1.00:2	0/1:91,88:32:179:0.492:2	0/1:88,79:32:167:0.473:2	0/1:0,135:32:135:1.00:2	0/1:105,66:33:171:0.386:2	0/1:117,79:32:196:0.403:2	0/1:0,121:32:121:1.00:2	0/1:39,55:32:94:0.585:2	0/1:52,73:33:125:0.584:2
chr5	150844647	rs34478431	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,83:29:178:0.466:2	./.	./.	./.	./.	./.	./.
chr5	150858983	rs138339360	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,89:33:190:0.471:2	./.	./.
chr5	150858985	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:29:195:0.026:2	./.	./.	./.	./.
chr5	150867719	rs78441677	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,23:32:23:1.00:2	./.	./.	./.	./.	0/1:87,100:31:187:0.535:2	./.	./.	./.
chr5	150886725	rs7723266	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:31:66:1.00:2	0/1:1,29:32:30:0.967:2	0/1:0,7:31:7:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,86:30:86:1.00:2	0/1:56,22:32:78:0.282:2	0/1:0,83:31:83:1.00:2	0/1:37,41:31:78:0.526:2	0/1:0,49:31:49:1.00:2	0/1:42,34:32:76:0.447:2
chr5	150886882	rs1105168	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,189:32:189:1.00:2	0/1:0,187:32:187:1.00:2	0/1:91,102:33:193:0.528:2	0/1:108,81:32:190:0.429:2	0/1:102,89:33:191:0.466:2	0/1:111,83:33:194:0.428:2	0/1:121,74:32:195:0.379:2
chr5	150891733	rs2304028	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,115:28:116:0.991:2	0/1:0,59:28:59:1.00:2	0/1:0,12:29:12:1.00:2	0/1:0,152:28:152:1.00:2	0/1:1,168:28:169:0.994:2	0/1:0,156:28:156:1.00:2	./.	0/1:1,189:28:190:0.995:2	0/1:82,64:29:146:0.438:2	0/1:71,62:28:133:0.466:2	0/1:75,59:28:134:0.440:2
chr5	150891772	rs2304029	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,19:32:19:1.00:2	./.	./.	./.	./.	0/1:115,79:32:194:0.407:2	./.	./.	./.
chr5	150901111	rs3822699	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:29:74:1.00:2	0/1:0,48:29:48:1.00:2	0/1:0,14:28:14:1.00:2	0/1:0,89:29:89:1.00:2	0/1:0,88:29:88:1.00:2	0/1:34,43:28:77:0.558:2	./.	0/1:0,69:28:70:1.00:2	0/1:44,47:30:91:0.516:2	0/1:51,27:29:78:0.346:2	0/1:34,44:29:78:0.564:2
chr5	150901261	rs6650971	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:30:44:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,53:30:53:1.00:2	0/1:2,54:30:56:0.964:2	0/1:32,20:29:52:0.385:2	./.	0/1:3,68:30:71:0.958:2	0/1:24,37:31:61:0.607:2	0/1:30,18:31:48:0.375:2	0/1:24,17:30:41:0.415:2
chr5	150901300	rs3734046	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:31:55:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,62:31:62:1.00:2	0/1:1,64:31:65:0.985:2	0/1:43,35:31:78:0.449:2	./.	0/1:1,99:31:100:0.990:2	0/1:38,45:32:83:0.542:2	0/1:33,26:32:59:0.441:2	0/1:26,25:31:51:0.490:2
chr5	150901597	rs3734047	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,31:30:31:1.00:2	0/1:1,20:32:21:0.952:2	./.	0/1:0,33:32:33:1.00:2	./.	./.	./.	./.	./.	0/1:24,17:31:41:0.415:2	./.
chr5	150901613	rs2053028	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:30:25:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,3:24:3:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,58:29:59:1.00:2	0/1:36,34:30:70:0.486:2	./.	0/1:0,58:30:58:1.00:2	0/1:26,28:32:54:0.519:2	0/1:27,10:30:37:0.270:2	0/1:33,16:31:49:0.327:2
chr5	150901630	rs3734049	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,21:28:21:1.00:2	0/1:2,19:30:21:0.905:2	./.	0/1:1,17:29:18:0.944:2	./.	./.	./.	./.	./.	0/1:27,14:29:41:0.341:2	./.
chr5	150905398	rs3734051	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,46:33:48:0.958:2	0/1:0,29:32:29:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,56:32:56:1.00:2	./.	./.	./.	0/1:31,25:32:56:0.446:2	./.	0/1:35,23:32:58:0.397:2	./.
chr5	150905485	rs36092108	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,24:30:49:0.490:2	./.	./.	./.	./.	./.
chr5	150908813	rs2304024	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,66:32:67:0.985:2	0/1:0,60:32:60:1.00:2	./.	0/1:0,146:32:146:1.00:2	./.	./.	./.	./.	./.	0/1:56,51:32:107:0.477:2	./.
chr5	150914184	rs1432643	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,72:32:72:1.00:2	0/1:0,39:32:39:1.00:2	./.	0/1:65,42:32:107:0.393:2	0/1:78,37:32:115:0.322:2	./.	./.	0/1:1,112:32:113:0.991:2	./.	./.	./.
chr5	150923405	rs6892335	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:32:45:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,51:33:51:1.00:2	0/1:0,49:32:49:1.00:2	0/1:1,60:33:61:0.984:2	0/1:0,36:32:36:1.00:2	0/1:0,67:32:67:1.00:2
chr5	150924486	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:30:70:0.057:2	./.	./.	./.
chr5	150924769	rs998076	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,20:29:31:0.645:2	./.	0/1:25,10:31:35:0.286:2	0/1:18,14:32:32:0.438:2	./.	./.
chr5	150925144	rs3797875	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,26:31:58:0.448:2	0/1:16,15:30:31:0.484:2	./.	0/1:49,28:31:77:0.364:2	0/1:27,33:30:60:0.550:2	0/1:0,65:29:65:1.00:2	0/1:25,32:30:57:0.561:2	0/1:0,84:30:84:1.00:2	0/1:0,49:31:49:1.00:2	0/1:32,28:30:60:0.467:2	0/1:1,73:31:74:0.986:2
chr5	150925477	.	A	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:66,11:25:77:0.143:2	./.	./.	0/1:75,22:17:98:0.227:2	0/1:56,26:17:82:0.317:2	0/1:68,18:20:86:0.209:2	0/1:55,21:18:76:0.276:2	0/1:75,35:19:111:0.318:2	0/1:93,24:15:117:0.205:2	0/1:56,20:21:77:0.263:2	0/1:72,23:21:95:0.242:2
chr5	150930186	rs2278370	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:32:12:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	150930345	rs2278371	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:32:12:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	150931082	rs55719915	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,60:32:134:0.448:2	./.
chr5	150942919	rs6872614	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:33:81:1.00:2	0/1:0,57:32:57:1.00:2	0/1:1,15:30:16:0.938:2	0/1:0,99:32:99:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,82:33:82:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,124:33:124:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,123:33:123:1.00:2
chr5	150942969	rs2304053	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:33,37:32:70:0.529:2	0/1:17,30:32:47:0.638:2	./.	./.	0/1:43,30:31:73:0.411:2	./.	0/1:30,46:31:76:0.605:2	0/1:61,34:31:95:0.358:2	0/1:58,46:31:104:0.442:2	./.	0/1:4,92:31:96:0.958:2
chr5	150943085	rs2304054	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:45,48:32:93:0.516:2	0/1:30,26:32:56:0.464:2	./.	./.	0/1:60,37:31:97:0.381:2	./.	0/1:85,46:32:131:0.351:2	0/1:63,60:31:123:0.488:2	0/1:74,57:32:131:0.435:2	./.	0/1:2,106:32:108:0.981:2
chr5	150945483	rs3734055	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:30,30:29:60:0.500:2	0/1:29,17:32:46:0.370:2	./.	./.	0/1:61,36:30:97:0.371:2	./.	0/1:50,68:31:118:0.576:2	0/1:64,41:30:105:0.390:2	0/1:45,41:31:86:0.477:2	./.	0/1:2,73:30:75:0.973:2
chr5	150945699	rs10085060	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:74,59:31:133:0.444:2	0/1:44,47:31:91:0.516:2	./.	./.	0/1:115,82:30:197:0.416:2	./.	0/1:114,83:30:197:0.421:2	0/1:117,81:30:198:0.409:2	0/1:118,71:31:189:0.376:2	./.	0/1:1,164:30:165:0.994:2
chr5	150945763	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,81:32:160:0.506:2	0/1:57,45:32:102:0.441:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	150945862	rs3734057	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:61,45:33:106:0.425:2	0/1:24,44:32:68:0.647:2	./.	./.	0/1:51,50:32:101:0.495:2	./.	0/1:64,62:32:126:0.492:2	0/1:97,67:32:164:0.409:2	0/1:68,54:34:122:0.443:2	./.	0/1:0,140:33:141:1.00:2
chr5	150945931	rs3734058	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:38,30:32:68:0.441:2	0/1:19,31:31:50:0.620:2	./.	./.	0/1:30,36:31:66:0.545:2	./.	0/1:36,50:31:86:0.581:2	0/1:43,37:32:80:0.463:2	0/1:46,42:32:88:0.477:2	./.	0/1:0,84:31:84:1.00:2
chr5	150946041	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:32:53:0.075:2	./.
chr5	150946132	rs3734059	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:25,25:30:50:0.500:2	0/1:7,19:32:26:0.731:2	./.	./.	0/1:20,22:31:42:0.524:2	./.	0/1:13,18:32:31:0.581:2	0/1:26,27:31:53:0.509:2	0/1:19,24:32:43:0.558:2	./.	0/1:2,64:32:66:0.970:2
chr5	150946436	rs9324700	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:71,64:33:135:0.474:2	0/1:41,42:33:83:0.506:2	./.	./.	0/1:44,60:32:104:0.577:2	./.	0/1:60,43:33:103:0.417:2	0/1:117,80:32:197:0.406:2	0/1:75,89:34:164:0.543:2	./.	0/1:2,176:33:178:0.989:2
chr5	150946773	rs1432862	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:56,72:32:128:0.563:2	0/1:31,40:32:71:0.563:2	./.	./.	0/1:53,45:32:98:0.459:2	./.	0/1:72,59:33:131:0.450:2	0/1:103,60:32:163:0.368:2	0/1:65,63:33:128:0.492:2	./.	0/1:1,142:32:144:0.993:2
chr5	150946966	rs1465690	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,38:32:38:1.00:2	0/1:0,15:32:15:1.00:2	./.	0/1:0,49:32:49:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,58:32:58:1.00:2
chr5	150947128	rs34166097	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,13:31:20:0.650:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	150947258	rs200096598	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,49:32:106:0.462:2	0/1:34,39:31:73:0.534:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	150947719	rs3734060	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:41,48:32:89:0.539:2	0/1:34,16:32:50:0.320:2	./.	./.	0/1:45,53:32:98:0.541:2	./.	0/1:74,49:32:123:0.398:2	0/1:46,30:31:76:0.395:2	0/1:47,37:33:84:0.440:2	./.	0/1:0,84:33:84:1.00:2
chr5	150948016	rs3734062	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,63:32:163:0.387:2	./.	0/1:111,84:32:195:0.431:2	0/1:104,69:33:173:0.399:2	./.	./.
chr5	150948147	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,12:16:144:0.083:2
chr5	151043103	rs1053411	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,3:32:22:0.136:2	0/1:6,11:32:17:0.647:2	./.	./.	0/1:14,5:33:19:0.263:2	./.	./.	0/1:21,10:32:32:0.323:2
chr5	151054227	rs2304052	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,3:35:91:0.033:2	./.	./.	./.	0/1:24,35:34:59:0.593:2	./.	./.
chr5	151202476	rs116474260	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,37:30:68:0.552:2	./.	./.	./.	./.	./.
chr5	151208500	rs75463357	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,12:31:33:0.364:2	0/1:23,8:32:31:0.258:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	151771817	rs1363422	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,183:32:183:1.00:2	0/1:0,122:32:122:1.00:2	0/1:0,22:31:22:1.00:2	0/1:1,189:31:190:0.995:2	0/1:1,139:31:140:0.993:2	0/1:0,186:31:186:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,189:31:189:1.00:2	0/1:0,161:32:162:1.00:2	0/1:0,149:32:149:1.00:2	0/1:1,189:31:190:0.995:2
chr5	151771838	rs4958531	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:106,74:30:180:0.411:2	0/1:49,69:29:118:0.585:2	./.	./.	./.	./.	0/1:3,128:29:131:0.977:2	./.	0/1:2,144:30:146:0.986:2	0/1:99,55:30:154:0.357:2	./.
chr5	151771852	rs4958532	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:90,78:32:169:0.464:2	0/1:47,65:32:112:0.580:2	./.	./.	./.	./.	0/1:2,129:31:131:0.985:2	./.	0/1:2,133:32:135:0.985:2	0/1:97,58:30:155:0.374:2	./.
chr5	151772028	rs35771607	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,43:32:94:0.457:2	./.	./.	./.	./.	./.	./.
chr5	151772055	rs1895245	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:20,25:30:45:0.556:2	0/1:19,17:31:36:0.472:2	./.	./.	./.	./.	0/1:1,50:30:51:0.980:2	./.	0/1:0,51:31:51:1.00:2	0/1:21,18:30:39:0.462:2	./.
chr5	151775064	rs4958535	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:82,61:32:143:0.427:2	0/1:45,37:32:82:0.451:2	./.	./.	./.	./.	0/1:7,179:32:186:0.962:2	./.	0/1:0,146:33:146:1.00:2	0/1:78,66:32:144:0.458:2	./.
chr5	151784183	rs3749787	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,14:30:38:0.368:2	0/1:11,8:31:19:0.421:2	./.	./.	0/1:18,28:29:46:0.609:2	0/1:32,16:29:48:0.333:2	./.	./.	./.	./.	0/1:14,6:24:20:0.300:2
chr5	151784592	rs150054462	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,74:31:127:0.587:2	./.	./.	./.	./.	./.	./.	./.
chr5	153026596	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,4:32:28:0.143:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	153029960	rs707176	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:45,41:32:86:0.477:2	0/1:22,18:33:40:0.450:2	./.	0/1:60,55:32:115:0.478:2	0/1:31,41:32:72:0.569:2	0/1:50,45:31:95:0.474:2	./.	0/1:59,58:33:117:0.496:2	./.	0/1:35,26:32:61:0.426:2	0/1:29,58:33:88:0.667:2
chr5	153078485	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:34:124:0.032:2	./.	./.
chr5	153381848	rs11748836	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,55:31:136:0.404:2	./.	0/1:68,57:31:125:0.456:2
chr5	153382518	rs34136150	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,34:32:71:0.479:2	0/1:26,11:33:37:0.297:2	./.	./.	./.	0/1:31,34:32:65:0.523:2	./.	./.	./.	./.	./.
chr5	153413390	rs2578377	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,4:30:16:0.250:2	0/1:0,118:31:118:1.00:2	0/1:72,40:31:112:0.357:2	0/1:83,77:30:160:0.481:2	0/1:1,111:31:112:0.991:2	0/1:157,6:32:163:0.037:2	0/1:0,148:32:148:1.00:2	0/1:71,59:31:130:0.454:2	0/1:0,178:32:178:1.00:2
chr5	153429459	rs690592	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,11:28:15:0.733:2	0/1:0,139:29:139:1.00:2	0/1:73,59:28:132:0.447:2	0/1:85,55:29:140:0.393:2	0/1:0,134:29:134:1.00:2	./.	0/1:1,157:29:158:0.994:2	0/1:60,49:29:109:0.450:2	0/1:1,169:29:170:0.994:2
chr5	153432733	rs2578386	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,9:33:20:0.450:2	0/1:1,114:33:115:0.991:2	0/1:46,53:33:99:0.535:2	0/1:76,57:32:133:0.429:2	0/1:0,127:32:127:1.00:2	./.	0/1:0,142:33:142:1.00:2	0/1:45,51:33:96:0.531:2	0/1:0,157:32:157:1.00:2
chr5	153432970	rs2255493	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,55:31:55:1.00:2	0/1:38,20:30:58:0.345:2	0/1:30,38:31:68:0.559:2	0/1:0,55:32:55:1.00:2	./.	0/1:0,73:32:73:1.00:2	0/1:36,39:32:75:0.520:2	0/1:0,60:31:60:1.00:2
chr5	153433556	rs17535045	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:40,37:29:77:0.481:2	0/1:26,19:29:45:0.422:2	0/1:2,3:30:5:0.600:2	./.	./.	0/1:41,42:29:83:0.506:2	./.	./.	./.	./.	./.
chr5	153433803	rs183260562	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,9:32:19:0.474:2	./.	./.	./.	./.	./.	./.
chr5	153433879	rs187974907	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,22:30:27:0.815:2	./.	./.	./.	./.	./.	./.
chr5	153434018	rs1824773	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,7:32:14:0.500:2	0/1:0,131:32:131:1.00:2	0/1:27,29:32:56:0.518:2	0/1:58,40:32:98:0.408:2	0/1:0,57:32:57:1.00:2	./.	0/1:0,126:33:126:1.00:2	0/1:40,42:33:82:0.512:2	0/1:2,110:32:112:0.982:2
chr5	153434407	rs1382278	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,7:31:12:0.583:2	0/1:1,103:30:104:0.990:2	0/1:31,29:30:60:0.483:2	0/1:39,48:31:87:0.552:2	0/1:2,80:30:82:0.976:2	./.	0/1:0,103:31:103:1.00:2	0/1:46,51:30:97:0.526:2	0/1:0,123:30:123:1.00:2
chr5	153434443	rs1382277	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:32:4:0.750:2	0/1:1,69:30:70:0.986:2	0/1:21,25:29:46:0.543:2	0/1:33,38:30:71:0.535:2	0/1:1,56:30:57:0.982:2	./.	0/1:0,54:32:54:1.00:2	0/1:34,28:31:62:0.452:2	0/1:1,91:31:92:0.989:2
chr5	153434737	rs72806620	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:25,20:32:45:0.444:2	0/1:12,7:32:19:0.368:2	./.	./.	0/1:20,20:32:40:0.500:2	./.	./.	0/1:32,10:30:42:0.238:2	./.	./.	./.
chr5	153435497	rs11958069	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,6:32:18:0.333:2	0/1:8,6:32:14:0.429:2	./.	./.	./.	0/1:10,9:30:19:0.474:2	./.	./.	./.	./.	./.
chr5	153435738	rs1046621	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:31:5:0.600:2	0/1:2,38:32:40:0.950:2	0/1:12,18:32:30:0.600:2	0/1:31,24:31:55:0.436:2	0/1:0,34:31:34:1.00:2	./.	0/1:0,48:33:48:1.00:2	0/1:27,19:32:46:0.413:2	0/1:0,44:33:44:1.00:2
chr5	153726769	rs13186787	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,14:32:33:0.424:2	./.
chr5	153783753	rs6580076	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,49:31:139:0.353:2	./.	./.	0/1:53,34:32:87:0.391:2	./.
chr5	153789190	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:30:52:0.077:2	./.	./.	./.	./.	./.
chr5	153796484	rs3734085	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,31:31:85:0.365:2	./.	./.	./.	./.	./.	./.	./.
chr5	153857101	rs34402828	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:71,44:31:115:0.383:2	0/1:38,38:30:76:0.500:2	./.	./.	./.	./.	0/1:115,82:31:197:0.416:2	./.	./.	./.	./.
chr5	154173490	rs371797350	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,4:32:39:0.103:2
chr5	154188041	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,4:32:95:0.042:2	./.	./.	./.	./.	./.	./.	./.
chr5	154200263	rs11167702	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,24:32:55:0.436:2	0/1:19,14:31:33:0.424:2	./.	0/1:26,34:30:60:0.567:2	0/1:34,25:30:59:0.424:2	0/1:0,48:30:48:1.00:2	0/1:36,23:31:59:0.390:2	0/1:34,31:31:65:0.477:2	./.	0/1:27,15:32:42:0.357:2	./.
chr5	154200612	rs3867430	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,11:31:20:0.550:2	./.	./.	0/1:6,8:29:14:0.571:2	0/1:11,14:30:25:0.560:2	0/1:0,8:29:8:1.00:2	0/1:9,5:31:14:0.357:2	./.	./.	./.	./.
chr5	154214189	rs145518722	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,15:32:39:0.385:2	./.	./.
chr5	154214232	rs62382170	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,18:32:54:0.333:2	0/1:12,24:33:36:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,29:32:74:0.392:2
chr5	154251364	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,71:30:136:0.522:2	./.	./.	./.	./.	./.
chr5	154268902	rs816739	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:33:64:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,23:32:23:1.00:2	0/1:1,101:32:102:0.990:2	0/1:0,75:33:75:1.00:2	0/1:1,58:32:59:0.983:2	0/1:0,58:32:58:1.00:2
chr5	154271948	rs816736	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:32:103:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,113:31:113:1.00:2	0/1:1,116:31:117:0.991:2	0/1:0,102:31:102:1.00:2	0/1:0,147:32:147:1.00:2	0/1:0,98:32:98:1.00:2	0/1:0,89:33:89:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,120:32:120:1.00:2
chr5	154275786	rs6865950	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,74:30:126:0.587:2	./.	./.	./.	./.	./.	./.	./.
chr5	154282146	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:33:108:0.037:2	./.	./.	./.	./.
chr5	154282235	rs1421813	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,39:33:74:0.527:2	./.	./.	./.	./.	./.	./.	./.
chr5	154284928	rs61749644	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,24:32:71:0.338:2	./.	./.	./.	./.	./.
chr5	154291409	rs1974777	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:32:29:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,6:31:6:1.00:2	0/1:16,22:32:38:0.579:2	0/1:0,40:31:40:1.00:2	0/1:0,46:31:46:1.00:2	0/1:1,40:32:41:0.976:2	0/1:0,63:31:63:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,54:31:54:1.00:2
chr5	154300940	rs348739	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:30:31:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,8:31:8:1.00:2	0/1:12,11:29:23:0.478:2	0/1:0,14:29:14:1.00:2	0/1:0,30:29:30:1.00:2	0/1:2,18:30:20:0.900:2	0/1:0,26:30:26:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,27:29:27:1.00:2
chr5	154306972	rs2258437	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:31:103:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,9:32:9:1.00:2	0/1:80,52:32:132:0.394:2	0/1:1,83:32:84:0.988:2	0/1:0,124:31:124:1.00:2	0/1:1,91:32:92:0.989:2	0/1:4,118:32:122:0.967:2	0/1:1,153:32:154:0.994:2	0/1:0,95:32:95:1.00:2	0/1:0,133:32:133:1.00:2
chr5	154346259	rs14922	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,50:29:114:0.442:2	./.	./.	./.	./.	0/1:55,58:30:113:0.513:2	./.
chr5	154346325	rs7965	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,47:31:86:0.547:2	0/1:0,102:32:102:1.00:2	./.	./.	./.	0/1:59,35:32:94:0.372:2	./.
chr5	154393446	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:124,4:31:128:0.031:2	./.	./.	./.	./.	./.	./.
chr5	154393458	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,10:27:169:0.060:2	0/1:157,11:29:170:0.065:2	./.	0/1:119,11:28:130:0.085:2	./.
chr5	154393965	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:33:197:0.025:2	./.	./.
chr5	154393995	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,5:31:181:0.028:2	./.	0/1:173,4:33:177:0.023:2	./.	./.
chr5	154394331	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,5:32:175:0.029:2
chr5	154394337	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,5:27:184:0.027:2
chr5	154394632	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:194,4:34:198:0.020:2	0/1:143,4:32:147:0.027:2	./.	./.	./.	./.	./.	0/1:188,4:34:192:0.021:2
chr5	154394751	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:124,5:33:129:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr5	154394833	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,5:31:88:0.057:2	./.	./.	./.
chr5	154394953	rs200070580	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,41:33:98:0.418:2	./.	./.	./.	./.	./.
chr5	154395158	rs6580126	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,88:32:89:0.989:2	0/1:0,39:32:39:1.00:2	0/1:4,4:32:8:0.500:2	0/1:0,77:32:77:1.00:2	0/1:40,32:31:72:0.444:2	0/1:0,66:31:66:1.00:2	0/1:2,60:32:62:0.968:2	0/1:0,77:32:77:1.00:2	0/1:0,99:33:99:1.00:2	0/1:26,36:32:62:0.581:2	0/1:0,108:32:108:1.00:2
chr5	154395181	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,6:31:83:0.072:2	./.	./.	0/1:94,5:32:99:0.051:2	./.	./.	./.
chr5	154395185	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,6:32:85:0.071:2	./.	./.	0/1:95,5:32:100:0.050:2	./.	./.	./.
chr5	154395387	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:31:130:0.031:2	./.	./.	./.	./.	./.
chr5	154395458	rs17116710	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:76,65:32:141:0.461:2	0/1:49,31:32:80:0.388:2	./.	0/1:59,55:32:114:0.482:2	./.	./.	./.	0/1:66,40:31:106:0.377:2	0/1:1,127:32:128:0.992:2	./.	0/1:75,62:32:137:0.453:2
chr5	154395682	rs56080630	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:113,62:31:175:0.354:2	0/1:61,49:31:110:0.445:2	0/1:10,21:31:31:0.677:2	0/1:111,70:30:182:0.387:2	./.	./.	./.	0/1:110,83:31:193:0.430:2	0/1:0,168:32:168:1.00:2	./.	0/1:104,79:30:183:0.432:2
chr5	154395976	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,6:30:164:0.037:2	./.	./.	./.
chr5	154396136	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,5:30:133:0.038:2	./.	./.	./.	./.
chr5	154396147	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,5:32:134:0.037:2	./.	./.	./.	./.
chr5	154396149	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,5:29:138:0.036:2	./.	./.	./.	./.
chr5	154396335	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:32:62:0.065:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	154396373	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:29:59:0.068:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	154396505	rs60928118	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:114,80:32:194:0.412:2	0/1:54,66:32:120:0.550:2	0/1:16,7:31:23:0.304:2	0/1:86,67:31:153:0.438:2	./.	./.	./.	0/1:105,90:32:195:0.462:2	0/1:2,190:33:192:0.990:2	./.	0/1:92,100:32:192:0.521:2
chr5	154396820	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:30:112:0.036:2	./.	./.	./.	./.
chr5	155771579	rs1801193	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:114,77:30:192:0.403:2	0/1:77,60:29:137:0.438:2	0/1:33,13:31:46:0.283:2	./.	./.	0/1:106,84:30:191:0.442:2	0/1:105,91:30:196:0.464:2	0/1:113,80:30:193:0.415:2	./.	0/1:85,103:30:188:0.548:2	0/1:92,96:30:188:0.511:2
chr5	155935708	rs45559835	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,7:32:16:0.438:2	./.	./.	./.	./.	./.	./.
chr5	156375420	rs138454661	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	156376703	rs6873053	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,175:33:175:1.00:2	0/1:0,106:33:106:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,158:33:158:1.00:2	0/1:0,164:32:164:1.00:2	0/1:0,151:33:151:1.00:2	0/1:0,124:33:124:1.00:2	0/1:70,84:33:154:0.545:2	0/1:0,169:34:169:1.00:2	0/1:0,161:33:161:1.00:2	0/1:0,166:33:166:1.00:2
chr5	156378693	rs61743250	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:128,66:31:194:0.340:2	./.	./.	./.	./.	./.	./.	./.
chr5	156459856	rs34670839	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:12,14:32:26:0.538:2	0/1:6,8:32:14:0.571:2	./.	0/1:24,17:32:41:0.415:2	./.	./.	0/1:0,4:32:4:1.00:2	./.	0/1:26,25:34:51:0.490:2	0/1:0,12:32:12:1.00:2	./.
chr5	156479424	rs1553317	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,167:31:167:1.00:2	0/1:0,187:30:187:1.00:2	0/1:48,24:31:72:0.333:2	0/1:1,174:31:175:0.994:2	0/1:113,84:31:197:0.426:2	0/1:109,87:31:196:0.444:2	0/1:2,170:31:172:0.988:2	0/1:111,81:31:192:0.422:2	0/1:0,159:32:160:1.00:2	0/1:1,160:31:161:0.994:2	0/1:110,84:30:194:0.433:2
chr5	156479426	rs12522248	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:48,23:33:71:0.324:2	0/1:112,75:33:187:0.401:2	./.	./.	0/1:130,63:33:193:0.326:2	./.	0/1:112,65:33:177:0.367:2	0/1:1,161:33:162:0.994:2	./.
chr5	156479509	rs1553316	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,175:30:176:1.00:2	0/1:1,186:29:187:0.995:2	0/1:61,64:29:125:0.512:2	0/1:4,177:30:181:0.978:2	0/1:130,63:29:193:0.326:2	0/1:126,66:31:192:0.344:2	0/1:0,185:30:185:1.00:2	0/1:130,67:30:197:0.340:2	0/1:1,182:31:183:0.995:2	0/1:2,174:30:176:0.989:2	0/1:103,87:29:190:0.458:2
chr5	156479556	rs199928074	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:140,19:31:159:0.119:2	./.	./.	0/1:134,29:32:163:0.178:2	./.	./.	./.	./.
chr5	156479568	rs10068551	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,43:32:133:0.323:2	./.	./.	0/1:87,54:32:141:0.383:2	./.	./.	./.	./.
chr5	156479572	rs2862716	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,43:31:150:0.287:2	./.	./.	0/1:117,41:31:158:0.259:2	./.	./.	./.	./.
chr5	156482459	rs1809941	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,145:32:146:1.00:2	0/1:0,82:32:82:1.00:2	0/1:9,11:32:20:0.550:2	0/1:2,149:31:151:0.987:2	0/1:107,71:31:178:0.399:2	0/1:80,75:31:155:0.484:2	0/1:0,164:32:164:1.00:2	0/1:101,82:32:183:0.448:2	0/1:0,169:33:169:1.00:2	0/1:0,144:32:144:1.00:2	0/1:92,80:31:172:0.465:2
chr5	156531736	rs1036199	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,4:33:4:1.00:2	0/1:37,28:32:65:0.431:2	0/1:0,63:32:63:1.00:2	0/1:38,27:33:65:0.415:2	0/1:0,50:32:50:1.00:2	0/1:0,58:33:59:1.00:2	0/1:0,69:34:69:1.00:2	0/1:31,31:34:62:0.500:2	0/1:38,46:32:84:0.548:2
chr5	156535914	rs201727518	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,49:33:130:0.377:2
chr5	156589585	rs31208	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,98:30:193:0.508:2	./.	0/1:92,94:29:186:0.505:2	./.	./.	./.	0/1:104,87:29:191:0.455:2	./.
chr5	156590155	rs140209435	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,23:31:37:0.622:2	./.
chr5	156590355	rs31220	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,40:33:82:0.488:2	./.	0/1:47,56:32:103:0.544:2	./.	0/1:98,4:33:102:0.039:2	./.	0/1:35,20:32:55:0.364:2	./.
chr5	156638342	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,5:35:135:0.037:2	./.	./.	./.
chr5	156638343	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,6:30:136:0.044:2	./.	./.	./.
chr5	156644939	rs246747	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,5:31:6:0.833:2	./.	./.	./.	./.	0/1:26,40:32:66:0.606:2	0/1:31,29:34:60:0.483:2	0/1:25,35:33:60:0.583:2	0/1:36,29:33:65:0.446:2
chr5	156747669	rs1823035	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,34:33:81:0.420:2	./.	0/1:38,25:33:63:0.397:2	./.	./.	0/1:38,20:33:58:0.345:2	0/1:20,15:33:35:0.429:2	./.
chr5	156752581	rs369858004	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,30:31:65:0.462:2	0/1:13,12:31:25:0.480:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	156753257	rs11551374	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,52:32:131:0.397:2	./.	0/1:61,52:32:113:0.460:2	./.	./.	./.	./.
chr5	156769896	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	156770133	rs10037485	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,30:30:50:0.600:2	./.	0/1:33,22:30:55:0.400:2	./.	./.	0/1:39,39:30:78:0.500:2	0/1:30,22:29:52:0.423:2	./.
chr5	156770209	rs10214194	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,37:32:71:0.521:2	./.	0/1:40,44:32:84:0.524:2	./.	./.	./.	./.
chr5	156770344	rs115757838	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,67:30:173:0.387:2	./.	./.	./.	./.
chr5	156898690	rs6860507	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,46:32:90:0.511:2	0/1:27,29:31:56:0.518:2	./.	0/1:77,70:33:147:0.476:2	0/1:90,68:32:158:0.430:2	./.	0/1:0,109:31:109:1.00:2	./.	0/1:0,110:32:111:1.00:2	./.	0/1:74,49:32:123:0.398:2
chr5	156899869	rs4704870	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,28:32:28:1.00:2	0/1:0,17:32:17:1.00:2	./.	0/1:0,30:33:30:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,33:33:34:1.00:2	0/1:0,35:32:35:1.00:2	0/1:17,12:33:29:0.414:2	0/1:0,33:32:33:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,28:32:28:1.00:2
chr5	156899925	rs61743233	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:29:9:0.333:2	./.	./.	./.	./.	./.
chr5	156917340	rs10067096	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,12:32:23:0.522:2	0/1:68,75:33:143:0.524:2	./.	./.	0/1:95,64:33:159:0.403:2	./.	0/1:86,80:33:166:0.482:2	./.	./.
chr5	156918850	rs2287749	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:31:11:0.545:2	./.	./.	./.	./.	./.	0/1:47,54:31:101:0.535:2	./.	./.
chr5	156936364	rs1422795	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,9:29:15:0.600:2	0/1:90,58:30:148:0.392:2	./.	0/1:60,77:30:137:0.562:2	./.	./.	./.	0/1:56,52:30:108:0.481:2	./.
chr5	156945849	rs72811306	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,26:32:54:0.481:2	./.	./.	./.
chr5	156991445	rs61753548	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,40:32:94:0.426:2	./.	./.
chr5	157065306	rs35793864	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,58:32:148:0.392:2	./.	./.
chr5	157073747	rs12188040	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:59,36:33:95:0.379:2	0/1:36,16:32:52:0.308:2	./.	./.	./.	./.	./.	0/1:44,45:31:89:0.506:2	./.	./.	./.
chr5	157075846	rs56278697	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,60:31:144:0.417:2	./.	./.	./.	./.
chr5	157078257	rs373290874	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,4:30:17:0.235:2	./.	./.	./.	./.
chr5	157078402	rs41275269	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,35:30:60:0.583:2
chr5	157078475	rs3749797	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,53:30:128:0.414:2	./.	./.	./.	./.	./.	./.	./.
chr5	157078924	rs184421438	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.
chr5	157098756	rs11740603	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,33:30:67:0.493:2	./.	./.	./.	./.	./.	./.	./.
chr5	157102159	rs10051838	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,24:33:48:0.500:2	./.	./.	./.	./.	0/1:38,30:33:68:0.441:2
chr5	157102185	rs6884959	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,13:30:37:0.361:2	0/1:7,8:30:15:0.533:2	./.	0/1:25,25:30:50:0.500:2	0/1:15,18:29:33:0.545:2	0/1:15,16:31:31:0.516:2	./.	0/1:20,21:30:43:0.512:2	./.	0/1:21,19:27:41:0.475:2	0/1:33,22:29:55:0.400:2
chr5	157106968	rs6892478	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,36:29:99:0.364:2	./.	./.	./.	./.	./.	./.	./.
chr5	157164962	rs2270812	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:29:29:1.00:2	0/1:0,27:30:27:1.00:2	0/1:2,4:30:6:0.667:2	0/1:18,16:30:34:0.471:2	0/1:0,33:29:33:1.00:2	0/1:32,25:30:57:0.439:2	0/1:41,16:28:57:0.281:2	0/1:29,33:30:62:0.532:2	0/1:35,15:30:50:0.300:2	0/1:28,13:30:41:0.317:2	0/1:32,17:30:49:0.347:2
chr5	157216478	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:32:168:0.024:2	./.	./.
chr5	158134994	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:33:161:0.025:2	./.
chr5	158204425	rs1368298	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,68:33:142:0.479:2	0/1:44,44:33:88:0.500:2	0/1:12,13:33:25:0.520:2	0/1:94,105:33:199:0.528:2	0/1:100,98:32:198:0.495:2	0/1:100,100:32:200:0.500:2	./.	./.	0/1:0,197:33:197:1.00:2	0/1:86,83:33:169:0.491:2	./.
chr5	158267099	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:32:48:0.085:2	./.	./.	./.
chr5	158585846	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:31:159:0.025:2	./.	./.	./.	./.	./.
chr5	158588365	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,4:31:148:0.027:2	./.	./.	./.	./.	0/1:105,4:31:109:0.037:2	./.	./.	./.	./.	./.
chr5	158588398	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:134,7:33:141:0.050:2	0/1:76,4:34:80:0.050:2	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:34:96:0.042:2	./.
chr5	158588483	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,10:31:153:0.065:2	0/1:85,6:30:91:0.066:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	158588495	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,6:30:158:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	158588596	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:32:127:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	158588602	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:33:111:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	158589993	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,5:32:144:0.035:2	./.
chr5	158590026	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,5:34:153:0.033:2	./.
chr5	158596014	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:32:176:0.023:2	./.	./.	./.
chr5	158596052	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.	./.
chr5	158596739	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:30:109:0.037:2	./.	./.	./.	./.
chr5	158601029	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:30:123:0.033:2	./.
chr5	158603684	rs5009411	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:154,21:32:175:0.120:2	0/1:171,8:32:179:0.045:2	0/1:38,3:32:41:0.073:2	0/1:159,20:32:179:0.112:2	0/1:152,6:32:158:0.038:2	./.	0/1:159,8:31:168:0.048:2	0/1:145,10:32:155:0.065:2	./.	0/1:135,9:32:144:0.063:2	0/1:179,20:33:199:0.101:2
chr5	158603758	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,10:33:195:0.051:2	0/1:160,6:31:166:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	158603804	rs199990596	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:124,52:28:176:0.295:2	0/1:100,29:28:129:0.225:2	0/1:31,9:29:40:0.225:2	0/1:142,25:28:167:0.150:2	0/1:170,6:27:178:0.034:2	0/1:138,28:28:166:0.169:2	0/1:129,46:29:175:0.263:2	0/1:148,21:28:169:0.124:2	./.	0/1:124,40:27:164:0.244:2	0/1:143,38:27:182:0.210:2
chr5	158603839	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:143,18:31:161:0.112:2	./.	./.	./.	./.	./.	0/1:115,10:30:125:0.080:2	./.	./.	./.	./.
chr5	158609037	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,7:33:122:0.057:2	./.	./.	./.	./.	./.	./.	./.
chr5	158609044	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,5:32:116:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr5	158621792	rs201073460	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:121,4:32:125:0.032:2	./.	./.	./.	./.	./.	0/1:175,6:29:181:0.033:2
chr5	158696959	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	158743788	rs3213119	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,72:30:166:0.434:2	./.	./.	./.	./.	./.
chr5	159344461	rs3729604	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,59:32:108:0.546:2	./.	0/1:43,36:30:79:0.456:2
chr5	159437621	rs41275305	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:30:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	159470134	rs77367863	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:33:14:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	159478133	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,3:30:18:0.167:2	./.	./.	./.	./.	./.	./.
chr5	159505208	rs4360078	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,33:32:57:0.579:2	0/1:23,8:32:31:0.258:2	0/1:7,4:31:11:0.364:2	0/1:0,48:31:48:1.00:2	0/1:0,25:31:25:1.00:2	0/1:48,36:32:84:0.429:2	0/1:0,43:32:43:1.00:2	0/1:45,40:31:85:0.471:2	0/1:58,33:33:91:0.363:2	0/1:24,21:33:46:0.467:2	./.
chr5	159520661	rs56251777	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:68,59:33:127:0.465:2	0/1:42,44:32:86:0.512:2	./.	0/1:55,53:33:108:0.491:2	0/1:56,35:32:91:0.385:2	./.	0/1:39,44:33:83:0.530:2	./.	./.	./.	./.
chr5	159520768	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:33:172:0.023:2	./.	./.
chr5	159656578	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:155,4:32:159:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr5	159659262	rs116237330	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,41:30:99:0.414:2	./.	./.	./.	./.	0/1:34,42:31:76:0.553:2	./.
chr5	159659273	rs1130435	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:37,25:31:62:0.403:2	0/1:22,17:31:39:0.436:2	0/1:14,8:31:22:0.364:2	./.	./.	0/1:57,37:31:94:0.394:2	0/1:71,41:30:112:0.366:2	./.	./.	./.	0/1:54,29:31:83:0.349:2
chr5	159665599	rs2277954	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:31:85:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,11:30:11:1.00:2	0/1:50,48:31:98:0.490:2	0/1:0,126:31:126:1.00:2	0/1:0,109:30:109:1.00:2	0/1:2,165:31:167:0.988:2	0/1:5,142:31:147:0.966:2	0/1:0,117:32:117:1.00:2	0/1:0,96:31:96:1.00:2	0/1:0,84:31:84:1.00:2
chr5	159686503	rs13362036	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,4:30:12:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	159776637	rs10053189	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,45:31:48:0.938:2	0/1:0,27:32:27:1.00:2	./.	0/1:1,52:31:53:0.981:2	0/1:3,57:31:60:0.950:2	0/1:25,24:31:49:0.490:2	0/1:28,38:31:66:0.576:2	0/1:1,66:32:67:0.985:2	0/1:39,31:32:70:0.443:2	0/1:26,36:32:62:0.581:2	0/1:17,27:31:44:0.614:2
chr5	159781959	rs142604768	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,20:31:39:0.513:2	./.	./.	./.	./.	./.
chr5	159820931	rs10515808	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,26:31:88:0.295:2	0/1:61,52:32:113:0.460:2	./.	./.
chr5	159821972	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:32:36:0.111:2	./.
chr5	159830317	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:34:186:0.022:2	./.
chr5	159831803	rs2961940	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	0/1:13,23:31:36:0.639:2	0/1:14,11:32:25:0.440:2	0/1:13,13:33:26:0.500:2	0/1:16,23:33:39:0.590:2	0/1:12,22:31:34:0.647:2	0/1:20,17:32:37:0.459:2
chr5	159835658	rs17856337	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,41:30:87:0.471:2	0/1:23,27:29:50:0.540:2	0/1:0,10:30:10:1.00:2	0/1:0,87:29:87:1.00:2	0/1:1,53:29:54:0.981:2	0/1:0,86:29:86:1.00:2	0/1:1,56:29:57:0.982:2	0/1:76,44:29:120:0.367:2	0/1:61,48:30:109:0.440:2	0/1:1,81:30:82:0.988:2	0/1:0,138:29:138:1.00:2
chr5	159854783	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,13:15:123:0.106:2	./.	./.	./.	./.	./.
chr5	159912418	rs2910164	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:33:35:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,2:32:2:1.00:2	0/1:29,29:33:58:0.500:2	0/1:17,21:33:38:0.553:2	0/1:0,46:32:47:1.00:2	0/1:25,32:33:57:0.561:2	0/1:0,46:32:46:1.00:2	0/1:0,53:33:53:1.00:2	0/1:26,25:33:51:0.490:2	0/1:0,58:33:58:1.00:2
chr5	159992542	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:151,4:32:155:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr5	159992655	rs3812005	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,30:32:78:0.385:2	0/1:20,12:33:32:0.375:2	0/1:4,7:32:11:0.636:2	0/1:38,34:32:72:0.472:2	./.	0/1:35,64:32:99:0.646:2	./.	0/1:1,89:32:90:0.989:2	./.	./.	./.
chr5	159992697	rs4921302	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,21:29:51:0.412:2	./.	./.	./.	./.	./.	./.	./.
chr5	159992751	rs4921150	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,16:31:44:0.364:2	./.	./.	./.	./.	./.	./.	./.
chr5	159992754	rs3812006	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:17,32:32:49:0.653:2	0/1:16,7:32:23:0.304:2	./.	0/1:27,15:32:42:0.357:2	./.	0/1:25,27:30:52:0.519:2	./.	0/1:0,45:31:45:1.00:2	./.	./.	./.
chr5	160034065	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.
chr5	160061565	rs149397148	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,8:31:19:0.421:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	160097496	rs958912	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:86,55:29:141:0.390:2	0/1:49,38:28:87:0.437:2	0/1:0,17:29:17:1.00:2	0/1:0,158:28:158:1.00:2	0/1:79,72:28:151:0.477:2	0/1:1,152:29:153:0.993:2	0/1:0,182:29:182:1.00:2	0/1:0,193:29:194:1.00:2	0/1:3,175:30:178:0.983:2	0/1:83,75:28:158:0.475:2	0/1:119,71:29:191:0.374:2
chr5	160097632	rs958911	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,67:32:132:0.508:2	0/1:28,32:32:60:0.533:2	0/1:0,17:32:17:1.00:2	0/1:1,149:31:150:0.993:2	0/1:0,120:31:121:1.00:2	0/1:1,122:31:123:0.992:2	0/1:0,172:31:172:1.00:2	0/1:0,145:31:145:1.00:2	0/1:1,147:31:149:0.993:2	0/1:0,130:31:130:1.00:2	0/1:73,73:32:146:0.500:2
chr5	160721319	rs2229944	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,72:32:147:0.490:2	./.	./.	0/1:77,57:32:134:0.425:2	./.	./.	./.	./.
chr5	161113004	rs13188991	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:67,63:32:130:0.485:2	0/1:40,59:31:99:0.596:2	0/1:9,17:30:26:0.654:2	0/1:93,66:31:159:0.415:2	0/1:70,79:32:149:0.530:2	./.	./.	0/1:135,59:31:194:0.304:2	0/1:111,76:32:187:0.406:2	0/1:94,89:31:183:0.486:2	./.
chr5	161116672	rs3811993	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,17:32:35:0.486:2	./.	./.	0/1:36,25:32:61:0.410:2	./.	./.	./.
chr5	161119071	rs12522663	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:33:87:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,126:32:126:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,125:32:125:1.00:2	0/1:0,142:32:142:1.00:2	0/1:1,134:32:135:0.993:2	0/1:0,143:33:143:1.00:2	0/1:0,110:33:110:1.00:2	0/1:0,103:33:103:1.00:2
chr5	161119125	rs13184586	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,60:30:106:0.566:2	0/1:46,28:29:74:0.378:2	0/1:0,7:30:7:1.00:2	0/1:64,50:31:114:0.439:2	0/1:0,95:30:95:1.00:2	./.	0/1:58,62:30:120:0.517:2	0/1:3,132:30:135:0.978:2	0/1:58,71:30:129:0.550:2	0/1:69,51:29:120:0.425:2	0/1:0,122:30:122:1.00:2
chr5	161128761	rs4277944	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,106:33:106:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,117:32:117:1.00:2	0/1:0,65:32:66:1.00:2	0/1:0,141:32:141:1.00:2	0/1:0,111:33:111:1.00:2	0/1:0,89:33:89:1.00:2	0/1:0,121:33:121:1.00:2
chr5	161178500	rs375547509	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:32:155:0.026:2	./.	0/1:170,4:32:174:0.023:2	./.	./.	./.
chr5	161178510	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:31:151:0.026:2	./.	./.	./.	./.	./.
chr5	161277899	rs41275339	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,10:32:25:0.400:2	./.	./.	./.	./.
chr5	161281245	rs1129647	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,13:33:40:0.325:2	./.	0/1:33,30:34:63:0.476:2	0/1:28,33:33:61:0.541:2	./.
chr5	161522556	rs11135176	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,24:32:59:0.407:2	./.
chr5	161528280	rs211037	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,4:30:13:0.308:2	0/1:52,34:31:86:0.395:2	./.	0/1:37,41:31:78:0.526:2	./.	0/1:42,45:31:87:0.517:2	./.	0/1:56,37:32:93:0.398:2	./.
chr5	162890953	rs380101	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,116:32:116:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,88:31:88:1.00:2	0/1:0,92:31:92:1.00:2	0/1:0,111:31:113:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,102:31:102:1.00:2	0/1:0,118:32:118:1.00:2	0/1:0,117:31:117:1.00:2	0/1:0,142:32:142:1.00:2
chr5	162896650	rs299284	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,14:32:14:1.00:2	./.	0/1:37,15:31:52:0.288:2	0/1:16,17:31:33:0.515:2	./.	0/1:30,33:32:63:0.524:2	./.	./.	./.
chr5	162902516	rs299290	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:33:5:1.00:2	./.	0/1:33,16:33:49:0.327:2	0/1:11,35:32:46:0.761:2	./.	0/1:14,16:33:30:0.533:2	./.	./.	0/1:41,33:33:74:0.446:2
chr5	162909716	rs299295	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,25:31:25:1.00:2	./.	./.	0/1:94,101:31:196:0.518:2	./.	0/1:84,112:31:196:0.571:2	./.	./.	./.
chr5	162911075	rs2230363	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,33:32:80:0.413:2	0/1:17,21:31:38:0.553:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,42:32:104:0.404:2
chr5	162932688	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:31:75:0.053:2	./.	./.	./.
chr5	162939175	rs143459228	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:30:11:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	162940999	rs11546512	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:21,14:32:35:0.400:2	0/1:13,6:31:19:0.316:2	0/1:0,4:32:4:1.00:2	./.	./.	0/1:7,8:32:15:0.533:2	./.	0/1:15,12:32:27:0.444:2	./.	./.	./.
chr5	167489093	rs72824988	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,17:30:29:0.586:2	0/1:11,3:31:14:0.214:2	./.	./.	./.	0/1:14,22:30:36:0.611:2	./.	./.	./.	./.	0/1:23,23:31:46:0.500:2
chr5	167545423	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:161,6:27:167:0.036:2	./.	./.	./.	./.	./.	./.	./.
chr5	167553880	rs10055910	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,12:31:18:0.667:2	0/1:188,5:28:193:0.026:2	0/1:93,90:32:183:0.492:2	./.	./.	0/1:97,81:31:178:0.455:2	0/1:69,75:33:144:0.521:2	0/1:54,64:32:118:0.542:2	./.
chr5	167631618	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,27:31:71:0.380:2	./.	./.	./.	./.	./.
chr5	167645888	rs1363560	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:86,87:30:173:0.503:2	0/1:50,37:29:87:0.425:2	./.	./.	0/1:112,83:30:195:0.426:2	0/1:102,78:29:180:0.433:2	./.	./.	0/1:0,176:30:177:1.00:2	./.	./.
chr5	167671570	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:29:86:0.047:2	./.	./.	./.	./.
chr5	167671631	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,4:29:93:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr5	167674370	rs3733988	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,23:30:56:0.411:2	0/1:2,37:30:39:0.949:2	0/1:1,45:30:46:0.978:2	0/1:28,27:30:55:0.491:2	0/1:1,53:30:54:0.981:2	0/1:41,26:30:67:0.388:2	0/1:1,38:31:39:0.974:2	0/1:0,54:31:54:1.00:2
chr5	167674472	rs17070023	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,82:32:161:0.509:2	./.	./.	./.	./.	0/1:56,57:33:113:0.504:2	0/1:74,50:33:124:0.403:2
chr5	167689228	rs191390427	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,74:31:132:0.561:2	./.	./.	./.
chr5	167689250	rs3208478	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,75:30:155:0.484:2	./.	./.	./.	./.	./.	./.
chr5	167689296	rs17632540	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,58:31:105:0.558:2	0/1:36,37:32:73:0.507:2	./.	0/1:96,76:31:172:0.442:2	0/1:94,96:31:191:0.505:2	0/1:97,73:30:170:0.429:2	0/1:104,89:31:193:0.461:2	0/1:92,104:31:196:0.531:2	0/1:72,68:32:140:0.486:2	0/1:2,106:32:108:0.981:2	0/1:1,110:31:111:0.991:2
chr5	167835539	rs17551608	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,32:34:71:0.451:2	./.	./.
chr5	167835608	rs139783136	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,26:31:75:0.347:2	./.
chr5	167850748	rs12054944	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,29:31:29:1.00:2	0/1:2,20:28:22:0.909:2	./.	0/1:0,49:28:49:1.00:2	0/1:24,21:27:45:0.467:2	0/1:0,45:28:45:1.00:2	0/1:24,13:27:37:0.351:2	0/1:25,19:27:44:0.432:2	0/1:22,27:30:49:0.551:2	0/1:24,25:30:49:0.510:2	0/1:12,15:29:27:0.556:2
chr5	167855044	rs61730019	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:29:7:0.714:2	./.	./.	./.	0/1:45,63:32:109:0.583:2	./.	./.	./.	./.
chr5	167855754	rs111786530	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,100:32:193:0.518:2	./.	./.	./.	./.	./.
chr5	167858371	rs3822660	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,25:31:47:0.532:2
chr5	167858372	rs3822659	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,25:30:48:0.521:2
chr5	167868779	rs3733981	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,130:31:131:0.992:2	0/1:1,79:32:80:0.988:2	0/1:11,14:33:25:0.560:2	0/1:84,71:32:155:0.458:2	./.	0/1:105,62:31:167:0.371:2	0/1:97,82:31:179:0.458:2	0/1:82,74:31:156:0.474:2	0/1:0,153:32:154:1.00:2	0/1:68,59:32:127:0.465:2	0/1:74,71:32:145:0.490:2
chr5	167868809	rs3733980	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,109:29:109:1.00:2	0/1:1,75:30:76:0.987:2	0/1:11,14:30:25:0.560:2	0/1:79,64:29:143:0.448:2	./.	0/1:90,59:29:149:0.396:2	0/1:86,65:28:151:0.430:2	0/1:90,61:29:151:0.404:2	0/1:0,118:30:118:1.00:2	0/1:59,51:30:110:0.464:2	0/1:65,67:29:132:0.508:2
chr5	167891830	rs3203960	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:33:8:1.00:2	0/1:0,85:32:85:1.00:2	./.	./.	./.	./.	./.	0/1:0,59:32:59:1.00:2	0/1:0,62:32:62:1.00:2
chr5	167891921	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,26:32:96:0.271:2	./.	./.	./.	./.	./.
chr5	167895953	rs17731898	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,23:32:54:0.426:2	0/1:24,7:31:31:0.226:2	./.	./.	./.	./.
chr5	167913510	rs244903	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:26,36:31:62:0.581:2	0/1:19,21:31:40:0.525:2	./.	./.	0/1:0,134:31:134:1.00:2	0/1:65,47:31:112:0.420:2	0/1:76,59:31:135:0.437:2	0/1:0,88:32:88:1.00:2	0/1:39,39:32:78:0.500:2	0/1:66,4:31:70:0.057:2	0/1:35,24:32:59:0.407:2
chr5	167919726	rs2305727	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,44:33:45:0.978:2	0/1:49,23:32:72:0.319:2	./.	0/1:2,40:32:42:0.952:2	0/1:44,25:33:69:0.362:2	./.	./.
chr5	167919825	rs2305728	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,157:31:159:0.987:2	0/1:112,66:31:178:0.371:2	./.	0/1:4,191:31:195:0.979:2	0/1:103,86:32:189:0.455:2	./.	./.
chr5	167924260	rs11557637	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,39:31:39:1.00:2	0/1:23,32:31:55:0.582:2	./.	0/1:0,52:31:52:1.00:2	0/1:21,24:32:45:0.533:2	./.	./.
chr5	167933060	rs2305733	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,50:32:50:1.00:2	0/1:37,45:32:82:0.549:2	./.	0/1:0,121:32:121:1.00:2	0/1:50,48:32:98:0.490:2	./.	./.
chr5	167933156	rs61744940	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,16:31:41:0.390:2	0/1:37,45:32:82:0.549:2	./.	./.	./.	./.	./.
chr5	167933158	rs2305734	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,39:30:39:1.00:2	0/1:37,44:30:81:0.543:2	./.	0/1:1,61:31:62:0.984:2	0/1:33,29:31:62:0.468:2	./.	./.
chr5	167943827	rs653568	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,97:32:97:1.00:2	0/1:0,67:32:67:1.00:2	./.	./.	0/1:0,84:32:84:1.00:2	0/1:68,52:31:120:0.433:2	0/1:66,37:31:103:0.359:2	0/1:0,102:32:102:1.00:2	0/1:0,113:32:113:1.00:2	./.	0/1:62,53:32:115:0.461:2
chr5	167988433	rs77612793	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,6:32:50:0.120:2	./.	./.	./.	./.	./.	./.	0/1:37,5:33:42:0.119:2
chr5	168093522	rs1048307	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,23:31:42:0.548:2	./.	./.	./.	./.
chr5	168093556	rs148264566	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,31:30:62:0.500:2	./.	./.	./.	./.	./.
chr5	168098235	rs2277933	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,8:29:15:0.533:2	0/1:6,3:32:9:0.333:2	./.	./.	0/1:1,15:32:16:0.938:2	0/1:1,10:31:11:0.909:2	./.	0/1:0,10:31:10:1.00:2	0/1:12,5:32:17:0.294:2	./.	./.
chr5	168098463	rs292486	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:31:52:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,51:30:51:1.00:2	0/1:1,44:31:45:0.978:2	0/1:0,26:31:26:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,34:31:34:1.00:2
chr5	168111021	rs145897065	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,35:32:78:0.449:2	./.	./.
chr5	168112927	rs35305517	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,6:24:17:0.353:2
chr5	168135089	rs139041731	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,62:30:155:0.400:2	./.	./.	./.	./.	./.
chr5	168175324	rs17634681	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,39:32:100:0.390:2	0/1:48,35:33:84:0.422:2	./.	./.
chr5	168176517	rs2304035	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:32:79:1.00:2	0/1:0,40:32:40:1.00:2	0/1:4,6:34:10:0.600:2	0/1:1,90:33:91:0.989:2	0/1:31,45:32:76:0.592:2	./.	./.	0/1:50,45:32:95:0.474:2	0/1:0,90:33:90:1.00:2	0/1:39,37:32:76:0.487:2	./.
chr5	168180081	rs10036727	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,80:32:81:0.988:2	0/1:0,28:32:28:1.00:2	0/1:7,3:31:10:0.300:2	0/1:3,88:32:91:0.967:2	0/1:71,48:31:119:0.403:2	0/1:45,41:32:86:0.477:2	0/1:67,56:32:123:0.455:2	0/1:64,54:33:119:0.458:2	0/1:67,55:33:122:0.451:2	0/1:37,37:32:74:0.500:2	./.
chr5	168201284	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,4:32:118:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr5	168212951	rs891921	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:0,24:33:24:1.00:2	0/1:3,7:32:10:0.700:2	0/1:0,55:33:55:1.00:2	0/1:0,51:32:51:1.00:2	0/1:18,24:31:42:0.571:2	0/1:0,71:31:71:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,41:30:42:1.00:2
chr5	168216602	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:32:139:0.029:2	./.	./.	./.	./.	./.
chr5	168233474	rs3797715	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,52:30:137:0.380:2	./.	0/1:59,47:31:106:0.443:2	0/1:57,46:31:103:0.447:2
chr5	168244447	rs4867964	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,37:33:37:1.00:2	0/1:0,26:32:26:1.00:2	./.	0/1:33,16:32:49:0.327:2	./.	./.	./.	./.	./.	./.	./.
chr5	168250350	rs924875	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,7:34:17:0.412:2	0/1:70,42:32:112:0.375:2	./.	0/1:74,72:32:146:0.493:2	./.	0/1:82,58:32:140:0.414:2	0/1:73,50:34:123:0.407:2	0/1:74,67:33:141:0.475:2	0/1:69,56:33:125:0.448:2
chr5	168671698	rs10063591	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,30:30:55:0.545:2	0/1:29,15:31:44:0.341:2	0/1:36,31:31:67:0.463:2	0/1:32,31:30:63:0.492:2	./.	./.	0/1:26,14:32:40:0.350:2
chr5	168690612	rs62376934	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,69:31:69:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,5:31:5:1.00:2	./.	0/1:53,42:30:95:0.442:2	0/1:0,77:30:77:1.00:2	0/1:56,51:30:107:0.477:2	0/1:0,107:30:107:1.00:2	0/1:50,38:31:88:0.432:2	0/1:45,43:31:88:0.489:2	0/1:0,71:30:71:1.00:2
chr5	168690635	rs62376935	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:20,40:31:60:0.667:2	0/1:13,23:31:36:0.639:2	./.	./.	./.	./.	./.	0/1:41,45:31:86:0.523:2	./.	./.	./.
chr5	169015479	rs116483731	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,71:31:174:0.408:2	./.	./.	./.	./.	./.	./.	./.
chr5	169021610	rs4493692	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:94,94:32:189:0.500:2	0/1:71,60:32:131:0.458:2	0/1:2,43:30:45:0.956:2	0/1:113,79:31:192:0.411:2	0/1:0,187:30:187:1.00:2	0/1:0,177:30:177:1.00:2	0/1:100,95:30:195:0.487:2	0/1:0,182:31:182:1.00:2	0/1:110,84:32:194:0.433:2	0/1:0,184:31:184:1.00:2	0/1:95,89:31:184:0.484:2
chr5	169028481	rs3797713	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,48:32:98:0.490:2	0/1:26,27:32:53:0.509:2	0/1:0,15:32:15:1.00:2	0/1:49,49:32:98:0.500:2	0/1:0,75:31:75:1.00:2	0/1:0,94:32:94:1.00:2	0/1:55,49:32:104:0.471:2	0/1:0,107:32:107:1.00:2	0/1:66,44:32:110:0.400:2	0/1:0,79:32:79:1.00:2	0/1:56,86:32:142:0.606:2
chr5	169031150	rs3777084	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,26:32:54:0.481:2	0/1:17,16:33:33:0.485:2	0/1:0,2:32:2:1.00:2	0/1:23,26:32:49:0.531:2	0/1:0,19:31:19:1.00:2	0/1:0,37:31:37:1.00:2	0/1:21,11:31:32:0.344:2	0/1:0,64:31:64:1.00:2	0/1:16,31:32:48:0.660:2	0/1:0,39:31:39:1.00:2	0/1:25,33:32:59:0.569:2
chr5	169116344	rs72841138	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,3:28:16:0.188:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	169127097	rs2112703	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,48:31:102:0.471:2	./.	0/1:2,123:31:125:0.984:2	0/1:26,45:31:71:0.634:2	0/1:40,53:32:93:0.570:2	./.
chr5	169129422	rs2306559	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,79:32:80:0.988:2	0/1:0,76:32:76:1.00:2	./.	./.	./.	./.	./.	./.	0/1:72,64:33:136:0.471:2	./.	0/1:1,117:33:118:0.992:2
chr5	169138957	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,6:29:176:0.034:2	./.	./.	./.
chr5	169174484	rs13155521	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,17:33:33:0.515:2	./.	0/1:26,24:31:50:0.480:2	0/1:19,23:33:42:0.548:2	./.	0/1:44,25:32:69:0.362:2
chr5	169267784	rs261623	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,4:32:12:0.333:2	0/1:50,44:32:94:0.468:2	0/1:43,34:32:77:0.442:2	0/1:43,34:32:77:0.442:2	./.	0/1:1,100:32:101:0.990:2	0/1:49,44:33:93:0.473:2	0/1:0,67:33:67:1.00:2	0/1:47,54:33:102:0.535:2
chr5	169310213	rs17646221	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,84:32:86:0.977:2	0/1:1,49:32:50:0.980:2	./.	0/1:70,56:32:126:0.444:2	0/1:66,38:31:104:0.365:2	0/1:2,104:32:106:0.981:2	0/1:75,62:32:137:0.453:2	0/1:53,66:32:120:0.555:2	0/1:55,63:33:118:0.534:2	0/1:1,81:32:82:0.988:2	./.
chr5	169435713	rs2287727	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,57:33:127:0.449:2	0/1:55,39:33:94:0.415:2	0/1:7,12:33:19:0.632:2	0/1:97,73:33:172:0.429:2	0/1:77,102:33:179:0.570:2	0/1:96,80:32:176:0.455:2	./.	./.	0/1:86,72:33:158:0.456:2	./.	./.
chr5	169454941	rs9791113	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,92:32:93:0.989:2	0/1:0,55:32:55:1.00:2	./.	./.	0/1:66,67:32:133:0.504:2	0/1:84,44:32:129:0.344:2	./.	0/1:93,66:31:159:0.415:2	0/1:2,97:33:99:0.980:2	0/1:41,49:33:90:0.544:2	0/1:0,102:32:102:1.00:2
chr5	169461547	rs3763048	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,41:32:42:0.976:2	0/1:0,21:32:21:1.00:2	./.	./.	0/1:27,26:32:53:0.491:2	0/1:26,28:32:54:0.519:2	./.	0/1:19,38:32:57:0.667:2	0/1:0,50:32:50:1.00:2	0/1:19,18:32:37:0.486:2	0/1:0,52:31:52:1.00:2
chr5	169469088	rs6555882	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,87:33:185:0.470:2
chr5	169482399	rs115134653	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,8:31:25:0.320:2	./.	./.	./.	./.
chr5	169504743	rs1045168	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,16:32:38:0.421:2	0/1:13,7:33:20:0.350:2	./.	0/1:42,25:33:67:0.373:2	0/1:38,24:33:62:0.387:2	0/1:37,37:30:74:0.500:2	0/1:61,36:33:97:0.371:2	0/1:38,31:32:69:0.449:2	0/1:35,32:32:68:0.478:2	0/1:29,26:33:55:0.473:2	0/1:30,19:32:49:0.388:2
chr5	169533240	rs2277944	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,9:29:14:0.643:2	./.	./.
chr5	169535522	rs10063424	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,140:29:140:1.00:2	0/1:0,75:29:75:1.00:2	0/1:0,16:30:16:1.00:2	0/1:102,89:29:191:0.466:2	0/1:96,89:30:185:0.481:2	0/1:1,177:30:178:0.994:2	0/1:2,182:30:184:0.989:2	0/1:0,168:29:168:1.00:2	0/1:89,81:30:170:0.476:2	0/1:1,100:29:101:0.990:2	0/1:72,68:29:140:0.486:2
chr5	169661994	rs957998	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,15:31:15:1.00:2	./.	./.	0/1:59,52:32:111:0.468:2	./.	0/1:87,30:33:117:0.256:2	./.	0/1:0,66:33:66:1.00:2	0/1:0,138:33:138:1.00:2
chr5	169679432	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:32:38:0.105:2	./.
chr5	169685163	rs315717	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,18:33:49:0.367:2	0/1:10,16:32:26:0.615:2	0/1:0,15:31:15:1.00:2	0/1:0,73:31:73:1.00:2	./.	0/1:0,75:31:75:1.00:2	0/1:30,30:31:60:0.500:2	0/1:67,38:32:105:0.362:2	./.	0/1:0,59:31:59:1.00:2	0/1:44,39:31:83:0.470:2
chr5	169685840	rs17648354	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,5:32:10:0.500:2	./.	./.	./.	./.	./.	./.
chr5	169688155	rs116736533	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,27:32:59:0.458:2	0/1:24,17:33:41:0.415:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	169693858	rs56262228	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,61:32:130:0.469:2	./.	./.	./.	./.	./.	./.
chr5	169697802	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,9:19:143:0.063:2
chr5	169702390	rs2271146	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,76:31:77:0.987:2	0/1:1,50:31:51:0.980:2	0/1:0,23:30:23:1.00:2	0/1:85,68:30:153:0.444:2	0/1:0,75:30:75:1.00:2	0/1:2,105:30:107:0.981:2	./.	./.	0/1:87,59:31:146:0.404:2	./.	0/1:99,70:31:169:0.414:2
chr5	169715038	rs315721	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:34,27:33:61:0.443:2	0/1:12,26:31:38:0.684:2	./.	./.	0/1:38,29:32:67:0.433:2	./.	./.	0/1:40,29:33:69:0.420:2	0/1:40,25:33:65:0.385:2	0/1:29,33:33:62:0.532:2	0/1:48,35:32:83:0.422:2
chr5	169805956	rs2301149	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,46:32:89:0.517:2	./.	0/1:52,44:32:96:0.458:2	./.	./.	0/1:45,39:32:84:0.464:2
chr5	169810796	rs11739136	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,40:30:86:0.465:2	./.	0/1:49,40:30:89:0.449:2	./.	./.	./.	./.	./.
chr5	170160830	rs190328280	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,29:30:53:0.547:2	./.	./.	./.	./.	./.	./.	./.
chr5	170215638	rs10036156	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,84:33:186:0.452:2	./.	./.	./.
chr5	170215670	rs7725726	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,70:31:145:0.483:2	./.	./.	./.
chr5	170239071	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:33:78:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	170239112	rs1063310	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,75:31:75:1.00:2	0/1:1,46:31:47:0.979:2	./.	./.	./.	0/1:41,38:30:79:0.481:2	./.	./.	0/1:49,45:31:94:0.479:2	./.	0/1:55,44:31:100:0.444:2
chr5	170336681	rs139178386	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:30:10:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	170597190	rs36104512	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,42:33:109:0.385:2	0/1:45,51:31:96:0.531:2	./.
chr5	170610406	rs144361650	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:33:119:0.034:2	./.	./.	./.	./.	./.
chr5	170626735	rs35724654	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,31:31:33:0.939:2	0/1:0,20:31:20:1.00:2	./.	./.	./.	0/1:29,24:32:53:0.453:2	./.	./.	./.	./.	./.
chr5	170692825	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:187,6:32:193:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr5	171326046	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,4:32:26:0.154:2	./.	./.	./.	./.	./.
chr5	171326056	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,4:32:25:0.160:2	./.	./.	./.	./.	./.
chr5	171326091	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:32:29:0.138:2	./.	./.	./.	./.	./.
chr5	171481606	rs10155597	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:22,18:27:41:0.450:2	0/1:20,16:28:36:0.444:2	./.	0/1:41,27:28:68:0.397:2	./.	0/1:1,56:26:57:0.982:2	0/1:55,40:28:95:0.421:2	./.	./.	0/1:31,22:28:53:0.415:2	0/1:25,16:27:42:0.390:2
chr5	171481667	rs56066852	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,31:31:57:0.544:2	0/1:15,16:32:31:0.516:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	171523436	rs4868141	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,30:31:53:0.566:2	./.	./.	0/1:20,37:31:57:0.649:2	0/1:19,20:31:39:0.513:2	./.	0/1:19,14:31:33:0.424:2
chr5	171533629	rs2306963	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:33:52:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,6:32:6:1.00:2	0/1:39,24:33:63:0.381:2	0/1:0,60:32:60:1.00:2	0/1:0,53:32:53:1.00:2	0/1:34,30:32:64:0.469:2	0/1:0,60:31:61:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,50:32:50:1.00:2
chr5	171533656	rs2306962	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:31:78:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,6:32:6:1.00:2	0/1:56,50:32:106:0.472:2	0/1:0,121:31:122:1.00:2	0/1:0,89:31:89:1.00:2	0/1:59,60:32:119:0.504:2	0/1:0,107:31:107:1.00:2	0/1:1,100:32:101:0.990:2	0/1:0,69:32:69:1.00:2	0/1:0,78:32:78:1.00:2
chr5	171533782	rs2306961	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,65:32:136:0.478:2	0/1:62,56:32:118:0.475:2	./.	0/1:60,71:32:131:0.542:2	./.	./.	./.	./.
chr5	171534801	rs3103586	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,25:29:63:0.397:2	./.	./.	./.	./.	./.	./.
chr5	171661166	rs2291512	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,93:29:195:0.477:2	./.	./.	./.	./.	./.
chr5	171780984	rs143272304	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,28:31:65:0.431:2	./.	./.	./.	./.	./.	./.	./.
chr5	171849471	rs17074773	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:8,6:30:14:0.429:2	0/1:3,4:30:7:0.571:2	0/1:0,3:30:3:1.00:2	./.	./.	0/1:9,7:31:16:0.438:2	./.	0/1:12,11:31:23:0.478:2	./.	./.	./.
chr5	172113235	rs747829	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,36:30:75:0.480:2	./.	./.	./.	0/1:43,28:32:71:0.394:2	./.
chr5	172196711	rs2431663	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,134:30:134:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,149:30:149:1.00:2	0/1:1,179:29:180:0.994:2	0/1:82,87:29:169:0.515:2	0/1:0,166:30:166:1.00:2	0/1:91,97:29:189:0.516:2	0/1:0,137:31:137:1.00:2	0/1:62,76:30:138:0.551:2	0/1:0,126:30:126:1.00:2
chr5	172196752	rs34471628	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,34:33:89:0.382:2	./.
chr5	172261462	rs35566639	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:31:5:0.600:2	0/1:0,2:33:2:1.00:2	./.	0/1:0,6:32:6:1.00:2
chr5	172324886	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,63:31:134:0.474:2	./.	./.	./.
chr5	172324897	rs564109	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,6:26:20:0.300:2	0/1:88,64:30:152:0.421:2	0/1:69,38:29:107:0.355:2	0/1:60,77:31:137:0.562:2	0/1:2,86:31:88:0.977:2	0/1:0,112:31:112:1.00:2	0/1:73,49:32:122:0.402:2	0/1:1,99:30:100:0.990:2	0/1:0,138:31:138:1.00:2
chr5	172341917	rs17716949	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,34:29:82:0.415:2	0/1:35,30:28:65:0.462:2	./.	./.	./.	./.	0/1:29,18:29:47:0.383:2	0/1:0,43:26:43:1.00:2
chr5	172386902	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:33:107:0.037:2	./.
chr5	172395572	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,5:31:97:0.052:2	0/1:92,6:29:98:0.061:2	./.	./.	./.	./.	./.	0/1:75,5:32:80:0.063:2
chr5	172517531	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:74,4:30:78:0.051:2	./.	./.	./.	./.	./.	./.
chr5	172518263	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:33:191:0.021:2	./.	./.	./.	./.	./.
chr5	172550204	rs1129146	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,36:33:81:0.444:2	./.	./.
chr5	172662024	rs2277923	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,19:33:25:0.760:2	0/1:93,99:33:192:0.516:2	./.	0/1:72,68:32:141:0.486:2	0/1:101,65:32:166:0.392:2	./.	./.	0/1:36,43:30:79:0.544:2	0/1:38,40:32:78:0.513:2
chr5	173035239	rs76658414	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:67,28:30:95:0.295:2	0/1:46,11:30:57:0.193:2	./.	./.	0/1:78,15:29:93:0.161:2	0/1:103,42:29:145:0.290:2	0/1:84,24:28:108:0.222:2	./.	./.	./.	./.
chr5	173035291	rs74729929	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:59,10:32:69:0.145:2	./.	./.	./.	0/1:30,3:31:33:0.091:2	0/1:60,10:31:70:0.143:2	0/1:48,11:31:59:0.186:2	./.	./.	./.	./.
chr5	173036257	rs77014290	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:100,13:33:113:0.115:2	0/1:62,13:32:75:0.173:2	./.	./.	0/1:88,6:32:94:0.064:2	0/1:107,12:32:119:0.101:2	0/1:72,10:32:82:0.122:2	./.	./.	./.	./.
chr5	173036394	rs72822197	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:130,25:31:155:0.161:2	0/1:83,22:32:105:0.210:2	./.	./.	0/1:151,27:30:178:0.152:2	0/1:126,37:31:163:0.227:2	0/1:147,35:32:182:0.192:2	./.	./.	./.	./.
chr5	173376506	rs12652907	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,40:32:102:0.392:2	./.	./.	./.	0/1:44,54:32:98:0.551:2	./.
chr5	173416365	rs61730190	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,49:31:49:1.00:2	./.	./.	0/1:18,43:32:61:0.705:2	./.
chr5	173426709	rs56138314	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,20:31:45:0.444:2	./.	./.	./.	./.	./.	./.
chr5	173428228	rs62378684	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,85:32:87:0.977:2	0/1:63,51:33:114:0.447:2	./.	./.
chr5	174156168	rs4242182	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,14:31:27:0.519:2	0/1:13,9:30:22:0.409:2	0/1:0,6:31:6:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,68:30:68:1.00:2	0/1:2,71:30:73:0.973:2	0/1:0,66:31:66:1.00:2	./.	0/1:1,40:30:41:0.976:2
chr5	174868840	rs155417	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:31:63:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,5:24:5:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,43:30:43:1.00:2	0/1:1,37:28:38:0.974:2	0/1:0,56:30:56:1.00:2	0/1:1,68:29:69:0.986:2	0/1:0,61:31:61:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,65:30:65:1.00:2
chr5	174869777	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:32:74:0.054:2	./.
chr5	174870150	rs4532	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:54,61:32:115:0.530:2	0/1:25,37:32:62:0.597:2	0/1:7,10:28:17:0.588:2	./.	0/1:63,59:30:122:0.484:2	./.	0/1:65,71:30:136:0.522:2	0/1:0,127:30:127:1.00:2	0/1:87,64:32:151:0.424:2	0/1:0,108:31:108:1.00:2	0/1:0,127:31:127:1.00:2
chr5	174870196	rs5326	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,30:30:69:0.435:2	./.	./.	./.	0/1:63,51:32:114:0.447:2	0/1:36,33:31:69:0.478:2	0/1:57,40:31:97:0.412:2
chr5	174936108	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:32:135:0.030:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	174937193	rs2662170	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,31:30:69:0.449:2	./.	./.	./.	0/1:1,84:32:86:0.988:2	0/1:25,49:31:74:0.662:2	0/1:51,56:32:107:0.523:2
chr5	174943597	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:35:172:0.023:2	./.	./.
chr5	175110779	rs1800689	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:63,62:30:125:0.496:2	0/1:52,39:31:91:0.429:2	./.	./.	./.	./.	0/1:112,73:30:185:0.395:2	./.	./.	./.	./.
chr5	175388335	rs201011758	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:95,98:31:193:0.508:2	0/1:61,52:30:113:0.460:2	0/1:35,8:30:43:0.186:2	0/1:101,89:31:190:0.468:2	0/1:152,44:31:196:0.224:2	0/1:160,34:31:194:0.175:2	0/1:103,87:31:190:0.458:2	./.	./.	./.	0/1:107,82:29:189:0.434:2
chr5	175392006	rs148500590	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:161,33:32:194:0.170:2	0/1:152,46:32:198:0.232:2	0/1:83,58:31:141:0.411:2	0/1:152,42:31:194:0.216:2	0/1:163,35:30:198:0.177:2	./.	0/1:147,48:31:195:0.246:2	0/1:163,34:30:197:0.173:2	0/1:162,30:32:192:0.156:2	0/1:120,76:31:196:0.388:2	0/1:117,81:32:198:0.409:2
chr5	175394181	rs200408233	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,153:33:194:0.789:2	0/1:48,147:32:195:0.754:2	0/1:145,41:32:186:0.220:2	0/1:101,93:33:194:0.479:2	0/1:113,86:32:199:0.432:2	0/1:161,37:32:198:0.187:2	0/1:99,100:32:199:0.503:2	./.	0/1:118,78:34:196:0.398:2	0/1:151,42:33:193:0.218:2	0/1:155,34:33:189:0.180:2
chr5	175511937	rs369705530	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:180,8:31:189:0.043:2	0/1:182,16:32:198:0.081:2	./.	0/1:190,6:31:196:0.031:2	0/1:191,7:32:198:0.035:2	./.	./.	./.	0/1:193,4:33:197:0.020:2	0/1:193,6:32:199:0.030:2	0/1:188,5:33:193:0.026:2
chr5	175511992	rs62389230	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:170,17:33:187:0.091:2	0/1:182,17:32:199:0.085:2	0/1:77,57:32:134:0.425:2	./.	0/1:126,69:32:195:0.354:2	0/1:102,96:32:198:0.485:2	0/1:190,7:33:197:0.036:2	0/1:7,188:33:195:0.964:2	0/1:116,79:34:195:0.405:2	0/1:114,79:32:193:0.409:2	0/1:181,4:33:185:0.022:2
chr5	175516446	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:149,40:30:189:0.212:2	0/1:154,36:30:190:0.189:2	0/1:126,30:29:156:0.192:2	0/1:169,29:31:198:0.146:2	0/1:162,36:30:198:0.182:2	0/1:168,28:30:197:0.143:2	0/1:170,26:31:196:0.133:2	0/1:153,39:30:192:0.203:2	0/1:162,30:32:192:0.156:2	0/1:167,28:30:195:0.144:2	0/1:173,20:32:193:0.104:2
chr5	175520229	rs200046108	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,42:33:196:0.214:2	./.	./.	./.	./.
chr5	175520758	.	A	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,38:30:89:0.427:2	./.	0/1:150,47:31:197:0.239:2	0/1:148,49:30:197:0.249:2	./.	0/1:74,119:30:193:0.617:2	0/1:136,63:32:199:0.317:2	0/1:145,53:30:198:0.268:2	./.
chr5	175524372	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:151,29:32:180:0.161:2	0/1:165,30:32:196:0.154:2	0/1:149,27:31:176:0.153:2	./.	./.	./.	./.
chr5	175528527	rs116633144	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,77:31:179:0.433:2	0/1:68,55:31:123:0.447:2	0/1:0,14:31:14:1.00:2	0/1:120,60:31:180:0.333:2	0/1:102,40:31:142:0.282:2	0/1:126,65:30:191:0.340:2	0/1:166,16:31:182:0.088:2	0/1:3,127:30:131:0.977:2	0/1:125,64:32:189:0.339:2	0/1:107,71:31:178:0.399:2	0/1:110,73:31:183:0.399:2
chr5	175530214	rs200276266	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:163,33:32:196:0.168:2	0/1:157,31:32:188:0.165:2	0/1:171,21:32:192:0.109:2	./.	./.	./.	./.
chr5	175530790	rs199636058	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:145,48:33:193:0.249:2	0/1:142,55:32:197:0.279:2	./.	0/1:146,48:33:194:0.247:2	./.	0/1:163,35:33:198:0.177:2	./.	0/1:146,48:33:194:0.247:2	./.	0/1:156,41:32:197:0.208:2	./.
chr5	175533585	rs199655223	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:140,51:33:191:0.267:2	0/1:139,58:32:197:0.294:2	0/1:127,43:32:172:0.253:2	0/1:128,65:33:193:0.337:2	0/1:107,91:32:199:0.460:2	0/1:112,81:33:193:0.420:2	0/1:105,91:33:196:0.464:2	0/1:140,55:33:195:0.282:2	0/1:155,41:34:196:0.209:2	0/1:148,46:34:195:0.237:2	0/1:130,62:33:192:0.323:2
chr5	175533611	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,6:35:196:0.031:2	./.	./.	./.
chr5	175540412	rs199692854	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:74,40:32:114:0.351:2	0/1:165,32:32:197:0.162:2	0/1:167,26:31:193:0.135:2	0/1:166,31:31:197:0.157:2	./.	0/1:140,56:32:196:0.286:2	0/1:170,27:33:197:0.137:2	0/1:171,26:32:198:0.132:2	./.
chr5	175540837	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:161,39:34:200:0.195:2	0/1:152,46:35:198:0.232:2	0/1:175,23:34:198:0.116:2	./.	./.	./.	./.
chr5	175716682	rs369118054	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:136,7:32:143:0.049:2	./.	./.	./.	./.	./.	./.
chr5	175716863	rs2560197	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:33:180:0.022:2	./.	./.	./.
chr5	175717216	rs72645798	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:41,31:31:72:0.431:2	0/1:31,24:31:55:0.436:2	./.	0/1:60,42:30:102:0.412:2	./.	0/1:59,47:32:106:0.443:2	0/1:74,61:31:135:0.452:2	./.	./.	./.	./.
chr5	175717296	.	C	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:32:70:0.057:2	0/1:41,4:32:45:0.089:2	./.	./.	./.	./.	./.	./.	./.	0/1:73,6:30:79:0.076:2	./.
chr5	175717316	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:30:102:0.039:2
chr5	175717356	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,4:33:100:0.040:2	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:32:114:0.035:2	./.	0/1:166,5:30:172:0.029:2
chr5	175717400	.	G	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,4:32:133:0.030:2	0/1:90,5:33:95:0.053:2	./.	./.	./.	./.	./.	./.	0/1:189,5:32:194:0.026:2	./.	0/1:179,6:27:185:0.032:2
chr5	175717402	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:88,5:31:93:0.054:2	./.	0/1:194,4:32:198:0.020:2	./.	./.	./.	./.	0/1:190,5:30:195:0.026:2	./.	0/1:182,6:31:188:0.032:2
chr5	175717453	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,6:32:192:0.031:2	./.	./.	./.	./.
chr5	175717455	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,6:34:188:0.032:2	./.	./.	./.	./.
chr5	175717456	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:176,4:33:180:0.022:2	0/1:124,4:32:128:0.031:2	./.	0/1:183,4:32:187:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr5	175717488	.	G	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:166,5:29:171:0.029:2	0/1:131,9:31:140:0.064:2	./.	./.	./.	./.	0/1:184,7:31:193:0.037:2	./.	0/1:169,6:31:175:0.034:2	0/1:175,5:29:181:0.028:2	0/1:179,6:25:185:0.032:2
chr5	175717557	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:171,16:31:187:0.086:2	0/1:116,10:31:126:0.079:2	./.	0/1:162,30:30:192:0.156:2	./.	./.	./.	./.	0/1:182,14:31:196:0.071:2	0/1:176,14:31:190:0.074:2	0/1:174,14:32:188:0.074:2
chr5	175717627	rs151017862	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:152,17:31:169:0.101:2	0/1:107,22:31:129:0.171:2	./.	./.	./.	0/1:161,30:29:191:0.157:2	./.	0/1:174,20:30:195:0.103:2	./.	0/1:162,17:32:181:0.095:2	./.
chr5	175717798	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:125,18:29:143:0.126:2	./.	0/1:173,21:30:194:0.108:2	0/1:176,24:30:200:0.120:2	0/1:165,14:30:179:0.078:2	./.	0/1:164,18:29:183:0.099:2
chr5	175772208	rs17622467	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:26,32:32:58:0.552:2	0/1:23,13:32:36:0.361:2	./.	0/1:53,37:32:90:0.411:2	./.	0/1:62,39:31:101:0.386:2	0/1:36,23:32:59:0.390:2	./.	./.	./.	./.
chr5	175774752	rs139751460	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.	./.	./.	./.	./.	./.
chr5	175793532	rs2303666	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:23,15:30:38:0.395:2	0/1:21,15:30:36:0.417:2	./.	0/1:42,25:29:67:0.373:2	./.	0/1:26,34:28:60:0.567:2	0/1:49,33:30:82:0.402:2	./.	./.	./.	./.
chr5	175919230	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:32:148:0.027:2
chr5	175995935	rs10056130	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,15:33:15:1.00:2	0/1:0,10:31:10:1.00:2	./.	0/1:0,17:30:17:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,19:30:19:1.00:2	0/1:6,7:32:13:0.538:2	0/1:0,26:31:26:1.00:2	0/1:10,11:33:21:0.524:2	0/1:5,6:31:11:0.545:2	0/1:7,8:31:15:0.533:2
chr5	175998208	rs6867593	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:29:8:1.00:2	./.	./.	./.	0/1:38,39:28:77:0.506:2	./.	0/1:29,27:28:56:0.482:2	0/1:27,39:30:66:0.591:2	0/1:48,58:29:106:0.547:2
chr5	175998246	rs17078320	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,12:32:12:1.00:2	./.	./.	./.	0/1:55,68:32:123:0.553:2	./.	0/1:36,40:33:76:0.526:2	0/1:37,43:32:80:0.538:2	0/1:47,60:32:107:0.561:2
chr5	176002144	rs4242200	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:30:60:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,91:30:91:1.00:2	0/1:0,119:30:119:1.00:2	0/1:0,90:30:90:1.00:2	0/1:0,109:30:109:1.00:2	0/1:2,102:30:104:0.981:2	./.	0/1:0,77:30:77:1.00:2	0/1:0,55:29:55:1.00:2
chr5	176004476	rs11134982	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:28:70:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,101:28:102:1.00:2	0/1:0,99:28:99:1.00:2	0/1:0,118:29:118:1.00:2	0/1:0,85:29:85:1.00:2	0/1:1,131:28:132:0.992:2	0/1:0,95:30:95:1.00:2	0/1:0,100:29:100:1.00:2	0/1:0,69:28:69:1.00:2
chr5	176004680	rs34767982	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,18:32:42:0.429:2
chr5	176005477	rs2358747	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,35:32:35:1.00:2	0/1:0,21:32:22:1.00:2	./.	0/1:0,73:31:73:1.00:2	0/1:3,132:31:136:0.978:2	0/1:0,93:31:93:1.00:2	0/1:65,75:31:140:0.536:2	0/1:0,108:31:108:1.00:2	0/1:35,37:31:72:0.514:2	0/1:27,37:32:64:0.578:2	0/1:28,23:30:51:0.451:2
chr5	176005481	rs61743422	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,20:32:47:0.426:2
chr5	176011264	rs752139	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,67:30:67:1.00:2	0/1:0,39:30:39:1.00:2	./.	0/1:0,100:29:100:1.00:2	0/1:1,136:29:137:0.993:2	0/1:0,110:29:110:1.00:2	0/1:70,69:30:139:0.496:2	0/1:2,122:29:124:0.984:2	0/1:51,36:29:87:0.414:2	0/1:54,37:29:91:0.407:2	0/1:28,42:28:70:0.600:2
chr5	176011889	rs4868660	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:57,59:32:116:0.509:2	0/1:28,28:32:56:0.500:2	./.	0/1:75,75:32:150:0.500:2	./.	./.	0/1:96,75:33:171:0.439:2	0/1:4,165:32:169:0.976:2	./.	0/1:46,48:32:94:0.511:2	./.
chr5	176011984	rs35018750	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,30:30:67:0.448:2	./.	./.	./.	./.	./.	./.
chr5	176017455	rs2291442	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,29:31:57:0.509:2	0/1:25,20:31:46:0.444:2	./.	0/1:35,47:31:82:0.573:2	0/1:0,95:31:95:1.00:2	0/1:0,76:31:76:1.00:2	./.	./.	0/1:34,42:32:76:0.553:2	./.	./.
chr5	176017639	rs17078347	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,33:31:33:1.00:2	./.	./.	./.	0/1:108,81:31:189:0.429:2	./.	0/1:103,76:33:179:0.425:2	0/1:95,82:32:177:0.463:2	0/1:94,85:31:179:0.475:2
chr5	176024503	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.
chr5	176024880	rs4868663	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:32:64:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,65:33:65:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,62:32:62:1.00:2
chr5	176025938	rs6556276	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,45:30:47:0.957:2	0/1:0,27:30:27:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,56:30:56:1.00:2	0/1:1,60:30:61:0.984:2	0/1:0,42:30:43:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,52:30:52:1.00:2	0/1:1,51:30:52:0.981:2	0/1:0,45:30:45:1.00:2	0/1:0,58:30:58:1.00:2
chr5	176026138	rs201635586	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,7:30:8:0.875:2	0/1:0,11:32:11:1.00:2	./.	./.	0/1:69,6:31:75:0.080:2	./.	./.
chr5	176026143	rs77245696	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:48,5:34:53:0.094:2	0/1:58,6:31:64:0.094:2	./.	0/1:53,5:32:59:0.086:2	0/1:1,13:31:14:0.929:2	0/1:0,17:31:17:1.00:2	./.	./.	0/1:69,8:32:77:0.104:2	./.	./.
chr5	176026146	rs79403503	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:50,6:33:57:0.107:2	0/1:59,6:32:65:0.092:2	./.	0/1:54,5:32:59:0.085:2	0/1:1,13:32:14:0.929:2	0/1:0,17:31:17:1.00:2	./.	./.	0/1:70,8:31:78:0.103:2	./.	./.
chr5	176069831	rs901740	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:30:45:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,55:29:55:1.00:2	0/1:0,59:29:59:1.00:2	0/1:0,63:29:63:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,44:31:44:1.00:2
chr5	176081907	rs11267007	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:48,35:32:83:0.422:2	0/1:21,16:32:37:0.432:2	./.	0/1:83,61:31:145:0.424:2	0/1:120,6:32:126:0.048:2	0/1:69,61:31:130:0.469:2	0/1:81,56:31:137:0.409:2	./.	0/1:84,71:31:155:0.458:2	./.	./.
chr5	176305104	rs377286325	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:31:58:0.069:2	./.	./.	./.	./.	./.
chr5	176305594	rs200744216	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:130,11:15:141:0.078:2	0/1:123,18:12:141:0.128:2	./.	./.	./.	./.	0/1:99,11:15:111:0.100:2
chr5	176305606	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,6:27:155:0.039:2	./.	./.	./.
chr5	176309082	rs34127573	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,20:32:43:0.465:2	0/1:16,25:32:41:0.610:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	176311122	rs370502221	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,37:32:72:0.514:2	./.	./.	./.	./.	./.
chr5	176314459	rs2278492	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,11:31:12:0.917:2	0/1:0,80:31:80:1.00:2	0/1:24,30:31:54:0.556:2	./.	0/1:18,27:32:45:0.600:2	./.	0/1:29,37:32:66:0.561:2	0/1:28,26:32:54:0.481:2	0/1:23,18:31:41:0.439:2
chr5	176314494	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,42:31:81:0.519:2	./.	./.	./.	./.	./.
chr5	176314639	rs6875296	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:32:6:0.667:2	0/1:0,64:32:64:1.00:2	0/1:20,35:31:55:0.636:2	./.	0/1:18,19:31:37:0.514:2	./.	0/1:20,21:33:41:0.512:2	0/1:18,17:32:35:0.486:2	0/1:9,15:31:24:0.625:2
chr5	176315835	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	176334195	rs2292255	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,26:30:26:1.00:2	0/1:0,20:31:20:1.00:2	./.	./.	0/1:10,14:29:24:0.583:2	0/1:21,17:30:38:0.447:2	0/1:24,8:29:32:0.250:2	0/1:16,11:31:27:0.407:2	0/1:31,16:30:47:0.340:2	./.	0/1:20,14:29:34:0.412:2
chr5	176378574	rs365132	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,46:31:46:1.00:2	0/1:0,24:32:24:1.00:2	./.	./.	0/1:14,29:32:43:0.674:2	0/1:26,24:31:50:0.480:2	0/1:17,16:32:33:0.485:2	0/1:30,29:32:59:0.492:2	0/1:22,46:33:68:0.676:2	./.	0/1:57,41:33:98:0.418:2
chr5	176382995	rs3733876	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,31:32:78:0.397:2	./.	./.	./.	0/1:74,71:33:145:0.490:2
chr5	176402401	rs1700490	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,189:32:190:0.995:2	0/1:2,146:32:148:0.986:2	./.	./.	0/1:98,78:31:176:0.443:2	0/1:104,94:31:198:0.475:2	0/1:99,98:32:197:0.497:2	0/1:116,83:32:199:0.417:2	0/1:125,74:33:199:0.372:2	./.	0/1:135,54:31:189:0.286:2
chr5	176409574	rs13167812	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,44:31:111:0.396:2	./.	./.	./.	./.	./.
chr5	176516631	rs1966265	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:31:12:0.500:2	./.	0/1:47,40:29:87:0.460:2	./.	0/1:70,62:30:133:0.470:2	./.	0/1:53,44:30:97:0.454:2	./.	0/1:66,46:30:113:0.411:2
chr5	176517461	rs446382	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,17:32:17:1.00:2	0/1:0,19:29:19:1.00:2	0/1:20,8:32:28:0.286:2	0/1:0,15:33:15:1.00:2	0/1:23,11:30:34:0.324:2	0/1:17,8:30:25:0.320:2	0/1:0,17:33:17:1.00:2	0/1:0,8:33:8:1.00:2
chr5	176517797	rs376618	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,26:33:64:0.406:2	0/1:22,10:32:32:0.313:2	0/1:0,10:31:10:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,64:32:64:1.00:2	0/1:46,52:31:98:0.531:2	0/1:0,62:31:62:1.00:2	0/1:107,4:33:111:0.036:2	0/1:48,40:32:88:0.455:2	0/1:0,71:32:71:1.00:2	0/1:0,89:32:89:1.00:2
chr5	176518784	rs452885	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,49:31:110:0.445:2	0/1:38,25:31:63:0.397:2	0/1:0,17:31:17:1.00:2	0/1:1,165:31:166:0.994:2	0/1:0,151:31:151:1.00:2	0/1:86,68:31:154:0.442:2	0/1:0,140:31:140:1.00:2	./.	0/1:84,47:32:131:0.359:2	0/1:1,136:31:137:0.993:2	0/1:0,135:31:135:1.00:2
chr5	176519648	rs200525902	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,89:30:195:0.456:2	./.	./.	./.
chr5	176519650	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,12:29:163:0.074:2	./.
chr5	176520243	rs351855	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:32:6:0.667:2	0/1:1,26:31:27:0.963:2	0/1:11,18:30:29:0.621:2	0/1:16,12:32:28:0.429:2	0/1:10,3:33:13:0.231:2	./.	./.	0/1:0,19:32:19:1.00:2	0/1:10,8:31:19:0.444:2
chr5	176636882	rs1363405	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:24,35:32:59:0.593:2	0/1:20,24:32:44:0.545:2	./.	./.	./.	./.	./.	0/1:40,45:32:85:0.529:2	./.	0/1:0,56:32:56:1.00:2	./.
chr5	176637149	rs3733874	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,12:31:28:0.429:2	./.
chr5	176637240	rs3733875	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,39:31:91:0.429:2	./.
chr5	176637471	rs28932177	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,29:30:68:0.426:2	./.	./.	./.
chr5	176637576	rs28932178	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,38:31:103:0.369:2	./.	0/1:38,31:33:69:0.449:2	./.
chr5	176638506	rs28932179	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,55:32:118:0.466:2	./.	./.	./.
chr5	176639105	rs28932181	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:48,24:29:72:0.333:2	0/1:33,21:28:54:0.389:2	./.	./.	./.	./.	./.	./.	./.	0/1:29,24:29:53:0.453:2	./.
chr5	176687117	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,6:30:131:0.046:2	./.	./.	./.	./.
chr5	176687122	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,6:31:133:0.045:2	./.	./.	./.	./.
chr5	176721119	rs35848863	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:12,13:31:25:0.520:2	0/1:6,6:27:12:0.500:2	./.	./.	./.	./.	./.	0/1:19,15:30:34:0.441:2	./.	0/1:15,7:30:22:0.318:2	./.
chr5	176721151	rs34165241	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:16,15:29:31:0.484:2	0/1:9,4:27:13:0.308:2	./.	./.	./.	./.	./.	0/1:19,15:28:34:0.441:2	./.	0/1:21,10:31:31:0.323:2	./.
chr5	176721198	rs28580074	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,32:32:34:0.941:2	0/1:0,10:32:10:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,34:32:34:1.00:2	0/1:10,11:33:21:0.524:2	0/1:0,26:32:26:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,30:32:30:1.00:2	0/1:2,30:33:32:0.938:2	0/1:19,7:33:26:0.269:2	0/1:0,32:33:32:1.00:2
chr5	176721272	rs11740250	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:33:5:0.800:2	0/1:19,8:33:27:0.296:2	./.	./.	./.	./.	./.	./.	0/1:16,18:33:34:0.529:2
chr5	176722005	rs78247455	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:18,37:32:55:0.673:2	0/1:13,7:30:21:0.350:2	./.	./.	./.	./.	./.	./.	./.	0/1:26,30:31:56:0.536:2	./.
chr5	176728817	rs28710014	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:35,28:33:63:0.444:2	0/1:30,24:33:54:0.444:2	./.	./.	./.	./.	./.	./.	./.	0/1:57,39:32:96:0.406:2	./.
chr5	176730981	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:28:6:0.500:2
chr5	176730992	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:22:6:0.500:2
chr5	176732965	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:35:44:0.091:2	./.	./.
chr5	176733116	rs4631	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,79:32:81:0.975:2	0/1:0,27:32:27:1.00:2	0/1:0,12:31:12:1.00:2	0/1:1,90:32:91:0.989:2	0/1:50,37:32:87:0.425:2	0/1:0,131:32:131:1.00:2	0/1:0,92:32:93:1.00:2	0/1:1,105:32:107:0.991:2	0/1:0,125:32:125:1.00:2	0/1:54,49:32:103:0.476:2	0/1:1,126:32:127:0.992:2
chr5	176734855	rs4568379	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,6:28:8:0.750:2
chr5	176737720	rs13190036	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,68:32:70:0.971:2	0/1:0,42:31:42:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,109:31:110:1.00:2	0/1:78,61:32:139:0.439:2	0/1:0,89:32:89:1.00:2	0/1:0,128:32:128:1.00:2	0/1:2,108:32:110:0.982:2	0/1:2,117:32:119:0.983:2	0/1:36,24:32:60:0.400:2	0/1:0,74:32:74:1.00:2
chr5	176737730	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:119,4:31:123:0.033:2	./.	./.	./.	./.	./.	./.
chr5	176761315	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:34:88:0.045:2	./.
chr5	176794473	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:32:172:0.023:2	./.	./.	./.
chr5	176798257	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:29:86:0.047:2	./.	./.	./.	./.
chr5	176815124	rs5030873	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:45,41:29:86:0.477:2	0/1:33,26:29:59:0.441:2	0/1:11,11:31:22:0.500:2	./.	0/1:115,78:28:193:0.404:2	./.	0/1:100,93:29:194:0.482:2	0/1:95,88:29:183:0.481:2	0/1:94,79:29:173:0.457:2	0/1:74,67:29:141:0.475:2	0/1:3,113:29:116:0.974:2
chr5	176815132	rs144306414	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,9:30:17:0.529:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	176827572	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:36:4:0.500:2	./.	./.
chr5	176831826	rs17876030	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:31:62:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,77:31:77:1.00:2	0/1:0,85:31:85:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,99:31:99:1.00:2	0/1:0,96:31:96:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,59:31:59:1.00:2
chr5	176836532	rs1801020	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,27:30:60:0.450:2	0/1:13,11:30:24:0.458:2	./.	0/1:0,63:30:63:1.00:2	0/1:40,24:28:64:0.375:2	0/1:0,67:29:67:1.00:2	0/1:1,91:29:92:0.989:2	0/1:1,61:29:62:0.984:2	0/1:23,30:30:53:0.566:2	0/1:38,27:28:65:0.415:2	0/1:0,55:29:55:1.00:2
chr5	176860914	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,4:34:24:0.167:2
chr5	176863110	rs149423489	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,21:31:46:0.457:2	./.
chr5	176863227	rs201683213	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,8:26:80:0.101:2	0/1:60,4:29:66:0.063:2
chr5	176863265	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,3:34:54:0.056:2	./.
chr5	176863519	rs1130857	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,6:33:16:0.375:2	0/1:8,3:33:11:0.273:2	0/1:0,6:32:6:1.00:2	0/1:13,11:32:24:0.458:2	0/1:11,8:29:19:0.421:2	0/1:0,13:32:13:1.00:2	./.	0/1:14,9:32:23:0.391:2	0/1:8,11:34:19:0.579:2	./.	0/1:6,7:32:13:0.538:2
chr5	176867943	rs335435	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,22:32:52:0.423:2	0/1:13,7:33:20:0.350:2	0/1:0,9:32:9:1.00:2	0/1:39,39:32:78:0.500:2	0/1:52,33:32:85:0.388:2	0/1:1,71:32:72:0.986:2	./.	0/1:36,45:32:81:0.556:2	0/1:43,31:33:74:0.419:2	./.	0/1:29,31:32:60:0.517:2
chr5	176885178	rs28538572	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:30:26:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,36:31:37:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,33:31:33:1.00:2
chr5	176885499	rs2544809	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:103,82:31:185:0.443:2	0/1:83,68:31:151:0.450:2	0/1:0,78:32:78:1.00:2	0/1:118,71:32:190:0.376:2	0/1:120,69:32:189:0.365:2	0/1:0,188:32:188:1.00:2	./.	0/1:110,82:32:192:0.427:2	0/1:110,78:32:188:0.415:2	./.	0/1:89,93:31:182:0.511:2
chr5	176886701	rs372070843	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,30:30:64:0.469:2	./.
chr5	176894756	rs2545794	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,27:33:52:0.519:2	0/1:16,15:32:31:0.484:2	0/1:0,12:33:12:1.00:2	0/1:41,34:32:75:0.453:2	0/1:63,48:31:111:0.432:2	0/1:0,102:32:102:1.00:2	./.	0/1:73,56:32:129:0.434:2	0/1:30,44:34:74:0.595:2	./.	0/1:27,33:33:60:0.550:2
chr5	176916516	rs335462	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:32:10:1.00:2	0/1:0,7:31:7:1.00:2	./.	./.	0/1:0,9:32:9:1.00:2	0/1:0,17:31:17:1.00:2	0/1:1,4:32:5:0.800:2	0/1:0,7:32:7:1.00:2	0/1:2,5:32:7:0.714:2	0/1:3,7:32:10:0.700:2	0/1:0,2:33:2:1.00:2
chr5	176917897	rs1132445	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,104:32:190:0.547:2	0/1:104,75:31:179:0.419:2	./.	0/1:98,83:32:181:0.459:2	./.	./.	./.
chr5	176930131	rs202146130	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,30:32:69:0.435:2	./.	./.
chr5	176930135	rs28376231	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:31:71:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,93:31:93:1.00:2	0/1:0,100:31:100:1.00:2	0/1:0,107:30:107:1.00:2	0/1:0,91:30:91:1.00:2	0/1:0,68:31:68:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,66:30:66:1.00:2
chr5	176935334	rs148416579	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:33:4:0.750:2	./.	./.
chr5	176936590	rs2112181	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,54:27:104:0.519:2	./.	./.	./.	./.	./.	./.
chr5	176936650	rs28565502	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:32:45:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,44:32:44:1.00:2
chr5	176936819	rs3749728	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,77:31:158:0.487:2	./.	./.	./.	./.	./.	./.
chr5	176940021	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,12:11:50:0.240:2	0/1:48,22:7:70:0.314:2	./.	./.	./.	0/1:30,14:11:44:0.318:2
chr5	176940384	rs335438	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:31,36:30:67:0.537:2	0/1:20,26:31:46:0.565:2	0/1:1,7:31:8:0.875:2	./.	0/1:58,69:31:127:0.543:2	0/1:1,85:31:86:0.988:2	0/1:48,57:31:105:0.543:2	0/1:2,105:31:107:0.981:2	0/1:41,53:32:95:0.564:2	0/1:39,39:32:78:0.500:2	0/1:2,64:30:66:0.970:2
chr5	176940479	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:31:65:0.062:2	./.
chr5	176942231	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:169,4:32:173:0.023:2	./.	./.	./.	./.	./.	./.
chr5	176942766	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:136,4:33:140:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr5	176943978	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,7:18:51:0.137:2	./.	./.	0/1:97,26:8:123:0.211:2	./.	./.	0/1:82,16:12:98:0.163:2	./.	./.	./.
chr5	176951276	rs337382	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:31:18:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,9:31:9:1.00:2
chr5	176951914	rs116293002	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:31:11:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	176952085	rs200390629	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,56:32:108:0.519:2	./.
chr5	176958397	rs2306761	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:30:7:0.429:2	0/1:21,38:32:59:0.644:2	./.	./.	./.	./.	./.	./.	./.
chr5	177019623	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,4:32:69:0.058:2	./.	./.	./.	./.	./.	./.	./.
chr5	177022316	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:33:79:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	177031348	rs11537644	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:26:16:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,11:28:11:1.00:2	0/1:14,8:25:22:0.364:2	0/1:0,12:30:12:1.00:2	0/1:15,5:23:20:0.250:2	./.	0/1:4,9:31:13:0.692:2	0/1:0,7:29:7:1.00:2	./.
chr5	177035964	rs729459	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,21:29:21:1.00:2	0/1:0,6:30:6:1.00:2	./.	0/1:0,38:30:38:1.00:2	./.	0/1:11,15:29:26:0.577:2	./.	0/1:27,19:29:46:0.413:2	0/1:13,9:29:22:0.409:2	0/1:0,26:28:26:1.00:2	0/1:18,9:27:27:0.333:2
chr5	177151281	rs200791849	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,7:26:194:0.036:2	./.
chr5	177151329	rs141664226	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:150,47:32:197:0.239:2	0/1:145,53:32:198:0.268:2	0/1:152,46:33:198:0.232:2	./.	./.	./.	./.
chr5	177151754	.	G	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:49,18:31:67:0.269:2	0/1:181,15:32:196:0.077:2	0/1:175,17:32:193:0.089:2	0/1:175,21:32:196:0.107:2	./.	0/1:147,48:32:195:0.246:2	0/1:164,26:34:190:0.137:2	0/1:171,24:32:195:0.123:2	./.
chr5	177158552	rs76216490	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:169,22:30:191:0.115:2	0/1:173,24:31:197:0.122:2	0/1:55,6:31:61:0.098:2	0/1:180,18:31:198:0.091:2	0/1:6,58:31:65:0.906:2	0/1:4,112:30:116:0.966:2	0/1:8,102:31:110:0.927:2	0/1:182,15:29:197:0.076:2	0/1:177,20:32:197:0.102:2	0/1:178,15:32:193:0.078:2	0/1:176,14:30:190:0.074:2
chr5	177158620	rs74542560	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,178:34:180:0.989:2	0/1:2,116:33:118:0.983:2	0/1:1,38:33:39:0.974:2	0/1:3,163:33:166:0.982:2	0/1:5,38:32:43:0.884:2	0/1:0,44:31:44:1.00:2	0/1:7,27:31:34:0.794:2	./.	0/1:2,175:33:179:0.989:2	0/1:4,175:33:180:0.978:2	0/1:4,166:33:172:0.976:2
chr5	177158627	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:30:72:0.056:2	./.	./.	./.	./.	./.
chr5	177161374	rs200462096	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:173,21:33:194:0.108:2	0/1:181,18:32:199:0.090:2	./.	0/1:175,23:33:198:0.116:2	./.	0/1:160,37:31:197:0.188:2	./.	0/1:170,28:32:198:0.141:2	./.	0/1:168,26:32:195:0.134:2	./.
chr5	177161384	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,9:32:102:0.088:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	177161854	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:76,4:31:81:0.050:2	./.	./.	./.	0/1:117,4:32:121:0.033:2	./.	./.	0/1:156,6:33:162:0.037:2	./.	./.
chr5	177161870	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:34:63:0.063:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	177161891	rs140979906	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:32:66:1.00:2	0/1:0,22:32:23:1.00:2	0/1:0,4:34:4:1.00:2	0/1:1,54:32:55:0.982:2	0/1:1,37:31:38:0.974:2	0/1:0,44:32:44:1.00:2	0/1:2,33:32:35:0.943:2	0/1:1,48:31:50:0.980:2	0/1:0,67:33:67:1.00:2	0/1:0,53:33:54:1.00:2	0/1:1,64:31:66:0.985:2
chr5	177161948	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,5:32:134:0.037:2	./.	./.	./.	./.	./.	0/1:186,6:33:193:0.031:2	./.	./.	./.
chr5	177163580	rs201479484	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:110,56:28:166:0.337:2	0/1:64,52:27:116:0.448:2	0/1:25,14:27:39:0.359:2	0/1:127,59:28:186:0.317:2	0/1:64,46:28:110:0.418:2	0/1:120,52:28:172:0.302:2	0/1:70,20:27:90:0.222:2	0/1:109,75:27:184:0.408:2	0/1:124,56:29:180:0.311:2	0/1:117,66:27:183:0.361:2	0/1:124,44:28:168:0.262:2
chr5	177164044	rs200041092	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:89,5:32:94:0.053:2	./.	0/1:180,6:31:186:0.032:2	0/1:2,8:28:10:0.800:2	0/1:4,11:29:15:0.733:2	./.	./.	0/1:192,5:33:197:0.025:2	./.	0/1:187,7:31:194:0.036:2
chr5	177167788	rs200149909	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:111,31:32:142:0.218:2	0/1:136,59:31:195:0.303:2	0/1:119,50:33:169:0.296:2	./.	./.	./.	./.
chr5	177171408	rs200702523	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,29:30:70:0.414:2	./.	0/1:145,54:30:199:0.271:2	0/1:142,56:31:198:0.283:2	./.	0/1:82,113:31:196:0.579:2	0/1:145,49:32:194:0.253:2	0/1:151,44:29:195:0.226:2	./.
chr5	177171937	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,15:34:200:0.075:2	./.	./.	./.	./.
chr5	177174784	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:193,5:32:198:0.025:2	./.	./.	0/1:190,4:33:194:0.021:2	./.	./.	./.
chr5	177419967	rs1800197	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,86:31:88:0.989:2	0/1:0,34:31:34:1.00:2	0/1:3,8:30:11:0.727:2	./.	0/1:84,62:31:146:0.425:2	./.	0/1:80,50:32:130:0.385:2	0/1:69,81:31:150:0.540:2	./.	./.	0/1:49,51:31:100:0.510:2
chr5	177422876	rs7445271	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,73:31:73:1.00:2	0/1:0,49:32:49:1.00:2	0/1:1,78:32:79:0.987:2	0/1:0,43:31:43:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,50:31:50:1.00:2
chr5	177422908	rs1135320	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,25:28:63:0.397:2	./.	0/1:34,27:28:61:0.443:2	./.	./.	0/1:0,42:30:42:1.00:2	0/1:0,42:28:42:1.00:2	./.
chr5	177465870	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,20:33:198:0.101:2	./.	./.	./.	./.
chr5	177466409	rs201340716	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:150,5:32:155:0.032:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	177469216	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:179,10:34:190:0.053:2	0/1:183,12:32:195:0.062:2	./.	./.	./.	0/1:182,5:31:187:0.027:2	./.	0/1:191,5:33:196:0.026:2	./.	./.	./.
chr5	177469218	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,11:34:195:0.056:2	0/1:183,11:32:194:0.057:2	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	0/1:190,6:32:196:0.031:2	./.	./.	./.
chr5	177473483	.	C	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:57,28:32:86:0.329:2	0/1:162,35:33:198:0.178:2	0/1:174,24:32:198:0.121:2	0/1:172,25:32:197:0.127:2	./.	0/1:138,60:32:198:0.303:2	0/1:167,28:33:195:0.144:2	0/1:146,42:32:190:0.223:2	./.
chr5	177547247	rs7719667	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:31:69:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,107:31:107:1.00:2	0/1:0,132:31:132:1.00:2	0/1:0,95:31:95:1.00:2	0/1:0,103:31:103:1.00:2	0/1:0,133:31:133:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,83:31:83:1.00:2	0/1:0,104:31:105:1.00:2
chr5	177571015	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:34:107:0.037:2	./.	./.
chr5	177574561	rs61751561	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,81:31:142:0.570:2	./.	./.
chr5	177649938	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:33:97:0.042:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	177665731	rs10061163	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,25:30:54:0.463:2	./.	./.	./.	./.	0/1:35,18:32:53:0.340:2	0/1:37,27:32:64:0.422:2
chr5	177666169	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,31:30:69:0.449:2
chr5	177669413	rs2241579	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,21:32:38:0.553:2	0/1:5,10:32:15:0.667:2	0/1:2,4:33:6:0.667:2	0/1:0,32:32:32:1.00:2	0/1:29,17:31:46:0.370:2	0/1:0,41:33:41:1.00:2	0/1:14,15:32:29:0.517:2	./.	./.	./.	./.
chr5	177673274	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:32:103:0.039:2	./.	./.	./.
chr5	177674589	rs72819017	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,27:30:51:0.529:2	./.	0/1:29,35:34:64:0.547:2	0/1:34,14:33:48:0.292:2	0/1:36,25:32:61:0.410:2
chr5	177675217	rs2913851	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:71,55:31:126:0.437:2	0/1:41,36:31:77:0.468:2	0/1:10,5:27:15:0.333:2	./.	0/1:58,52:30:110:0.473:2	./.	0/1:3,126:31:129:0.977:2	0/1:3,165:30:168:0.982:2	0/1:0,118:31:118:1.00:2	0/1:0,111:30:111:1.00:2	0/1:0,142:30:142:1.00:2
chr5	177683377	rs890802	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,23:30:23:1.00:2	0/1:1,11:30:12:0.917:2	./.	0/1:29,7:30:36:0.194:2	./.	0/1:30,11:29:41:0.268:2	0/1:28,14:29:42:0.333:2	0/1:0,26:30:26:1.00:2	0/1:0,18:29:18:1.00:2	0/1:14,7:31:21:0.333:2	0/1:0,13:31:13:1.00:2
chr5	177683905	rs61739424	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,38:32:85:0.447:2	0/1:37,25:32:62:0.403:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	177684501	rs191580396	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,55:31:126:0.440:2	./.
chr5	177688772	rs2973745	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:35,17:29:52:0.327:2	0/1:18,6:30:24:0.250:2	./.	0/1:37,30:28:67:0.448:2	./.	./.	./.	0/1:4,64:28:68:0.941:2	0/1:0,62:30:62:1.00:2	0/1:33,24:30:57:0.421:2	0/1:28,40:29:68:0.588:2
chr5	177715291	rs890801	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,52:32:52:1.00:2	0/1:5,4:31:9:0.444:2	0/1:64,53:32:117:0.453:2	0/1:38,38:32:76:0.500:2	0/1:4,127:32:131:0.969:2	0/1:1,60:32:61:0.984:2	0/1:0,105:32:105:1.00:2	0/1:0,99:33:99:1.00:2	0/1:0,100:32:100:1.00:2	0/1:89,45:33:134:0.336:2
chr5	177715555	rs115564454	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,51:31:130:0.392:2	./.	./.	./.	./.	./.	./.
chr5	177715581	rs2913832	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,74:32:75:0.987:2	0/1:0,69:31:69:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,98:32:98:1.00:2	0/1:0,107:31:107:1.00:2	0/1:1,105:31:106:0.991:2	0/1:2,93:31:95:0.979:2	0/1:2,126:32:128:0.984:2	0/1:0,107:33:107:1.00:2	0/1:0,97:31:97:1.00:2	0/1:0,91:31:91:1.00:2
chr5	177987740	rs34594012	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,19:32:36:0.528:2	0/1:13,13:31:26:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,27:30:49:0.551:2
chr5	178139442	rs1132338	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:30:6:0.500:2	0/1:40,42:30:82:0.512:2	0/1:0,72:30:72:1.00:2	0/1:37,40:30:77:0.519:2	./.	0/1:64,31:30:95:0.326:2	0/1:57,43:31:100:0.430:2	./.	0/1:75,54:30:129:0.419:2
chr5	178140090	rs1132336	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,18:32:39:0.462:2	0/1:0,32:31:32:1.00:2	0/1:15,13:29:28:0.464:2	./.	0/1:23,15:30:38:0.395:2	0/1:19,25:32:44:0.568:2	./.	0/1:20,29:32:49:0.592:2
chr5	178140190	rs371403291	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,28:32:77:0.364:2	./.
chr5	178294059	rs11952817	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:38,30:28:69:0.441:2	0/1:22,12:28:34:0.353:2	./.	./.	0/1:0,61:29:61:1.00:2	0/1:41,42:32:83:0.506:2	0/1:42,39:29:81:0.481:2	0/1:58,44:29:103:0.431:2	./.	0/1:58,45:29:103:0.437:2	0/1:1,87:29:88:0.989:2
chr5	178294060	rs11955074	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,42:30:83:0.506:2	./.	./.	./.	./.	0/1:54,34:31:88:0.386:2
chr5	178309766	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:32:77:0.052:2	./.
chr5	178310446	rs4130052	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:50,58:30:108:0.537:2	0/1:18,35:30:53:0.660:2	./.	0/1:45,38:29:83:0.458:2	0/1:4,50:29:54:0.926:2	0/1:27,34:29:61:0.557:2	0/1:1,57:29:58:0.983:2	0/1:45,45:29:90:0.500:2	./.	0/1:0,63:30:63:1.00:2	0/1:0,125:30:126:1.00:2
chr5	178310550	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:189,4:34:193:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr5	178310743	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,5:33:69:0.072:2	./.	./.	./.
chr5	178310821	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,4:31:36:0.111:2	./.	./.	./.	0/1:68,4:32:72:0.056:2	./.	./.
chr5	178310938	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,4:31:57:0.070:2	./.	./.	./.	./.	./.	./.
chr5	178310947	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,4:33:61:0.066:2	./.	./.	./.	./.	./.	./.
chr5	178311250	rs61740831	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,30:33:59:0.508:2	./.
chr5	178358857	rs61744382	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,11:32:15:0.733:2	./.	./.	./.	./.	0/1:7,12:31:19:0.632:2
chr5	178358950	rs34499286	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,8:34:15:0.533:2	./.	./.
chr5	178359136	rs961030	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,30:31:56:0.536:2	./.	./.	0/1:29,13:32:43:0.310:2	./.	0/1:26,18:32:44:0.409:2	0/1:21,17:33:38:0.447:2	0/1:29,17:32:46:0.370:2
chr5	178359822	rs12187167	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,6:29:17:0.353:2	./.	./.	./.	./.	0/1:18,17:31:35:0.486:2
chr5	178359989	rs12186577	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,30:32:67:0.448:2	./.	./.	./.	./.	0/1:53,24:33:77:0.312:2
chr5	178360056	rs12186584	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,24:28:52:0.462:2	./.	./.	./.	./.	0/1:32,27:29:59:0.458:2
chr5	178391860	rs6867221	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,41:31:72:0.569:2	./.	./.	0/1:43,27:30:70:0.386:2	./.	./.	0/1:31,25:32:56:0.446:2	./.
chr5	178391902	rs12719860	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:32:44:1.00:2	0/1:1,44:33:45:0.978:2	0/1:0,10:33:10:1.00:2	0/1:27,23:32:50:0.460:2	0/1:0,62:32:62:1.00:2	0/1:0,70:33:70:1.00:2	0/1:28,36:34:64:0.563:2	0/1:0,55:33:55:1.00:2	0/1:0,50:33:50:1.00:2	0/1:31,23:33:54:0.426:2	0/1:0,80:33:80:1.00:2
chr5	178409927	rs17078874	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,104:30:196:0.531:2	./.	./.	./.	./.	0/1:93,83:31:176:0.472:2
chr5	178409950	rs17078875	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,97:32:191:0.508:2	./.	./.	./.
chr5	178410151	rs2071247	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:30:12:0.583:2	./.	./.	0/1:32,34:31:66:0.515:2	./.	./.	0/1:36,36:32:72:0.500:2	./.	0/1:18,33:32:51:0.647:2
chr5	178410213	rs17078877	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,17:32:39:0.436:2	./.	./.
chr5	178413302	rs62638620	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,33:32:59:0.559:2	./.	./.	./.	./.	./.	./.	./.
chr5	178413590	rs143631264	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,7:33:16:0.438:2	./.
chr5	178413947	rs11746675	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,20:31:53:0.377:2	0/1:27,12:32:39:0.308:2	0/1:6,6:32:12:0.500:2	0/1:1,95:32:96:0.990:2	0/1:0,99:32:99:1.00:2	0/1:0,92:32:92:1.00:2	0/1:1,94:32:95:0.989:2	0/1:0,106:32:106:1.00:2	0/1:1,69:33:70:0.986:2	./.	0/1:29,25:32:54:0.463:2
chr5	178415937	rs2067011	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,51:27:116:0.440:2	0/1:46,33:28:79:0.418:2	0/1:10,6:29:16:0.375:2	0/1:63,82:28:145:0.566:2	0/1:98,74:28:172:0.430:2	0/1:64,80:28:144:0.556:2	0/1:2,120:29:122:0.984:2	0/1:5,176:28:181:0.972:2	0/1:1,142:29:143:0.993:2	./.	0/1:82,46:27:128:0.359:2
chr5	178415982	rs4701014	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,120:29:120:1.00:2	0/1:0,92:29:92:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,181:29:181:1.00:2	0/1:0,167:30:167:1.00:2	0/1:0,167:29:167:1.00:2	0/1:2,111:29:113:0.982:2	0/1:0,172:29:172:1.00:2	0/1:0,139:30:139:1.00:2	0/1:0,126:29:126:1.00:2	0/1:0,138:29:138:1.00:2
chr5	178415983	rs5019554	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,59:32:142:0.415:2	./.	./.
chr5	178416063	rs2645339	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,60:31:121:0.496:2	0/1:32,40:31:72:0.556:2	0/1:7,10:31:17:0.588:2	0/1:92,86:30:178:0.483:2	0/1:100,88:31:188:0.468:2	0/1:118,71:31:189:0.376:2	0/1:0,187:31:187:1.00:2	0/1:0,181:31:181:1.00:2	0/1:0,136:32:136:1.00:2	./.	0/1:53,62:32:115:0.539:2
chr5	178416288	rs2071246	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,31:32:71:0.437:2	0/1:19,16:31:35:0.457:2	0/1:0,10:31:10:1.00:2	0/1:47,37:32:84:0.440:2	0/1:34,23:31:57:0.404:2	0/1:35,35:31:70:0.500:2	0/1:0,65:31:65:1.00:2	0/1:0,108:31:108:1.00:2	0/1:0,82:33:82:1.00:2	0/1:39,28:32:67:0.418:2	0/1:39,37:31:76:0.487:2
chr5	178416348	rs17839804	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,46:32:99:0.465:2	0/1:31,26:32:57:0.456:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	178459283	rs17078988	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,17:29:59:0.288:2	./.	0/1:19,44:30:63:0.698:2	0/1:30,37:31:67:0.552:2	./.	./.
chr5	178459426	rs17078991	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,19:32:44:0.432:2	./.	0/1:18,25:33:43:0.581:2	0/1:48,34:33:82:0.415:2	./.	./.
chr5	178507004	rs149489106	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:33:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr5	178507048	rs116562180	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,21:31:58:0.362:2	./.	./.	./.	./.	./.
chr5	178507069	rs1445846	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,26:34:73:0.356:2	0/1:28,28:33:56:0.500:2	0/1:0,8:32:8:1.00:2	0/1:43,29:33:72:0.403:2	0/1:26,14:32:40:0.350:2	0/1:0,59:32:59:1.00:2	./.	0/1:49,28:33:77:0.364:2	0/1:72,40:34:112:0.357:2	0/1:0,56:33:56:1.00:2	0/1:89,42:33:131:0.321:2
chr5	178507090	rs1445845	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,18:30:65:0.277:2	0/1:30,25:32:55:0.455:2	0/1:0,8:30:8:1.00:2	0/1:43,22:31:65:0.338:2	0/1:27,14:31:41:0.341:2	0/1:0,54:30:54:1.00:2	./.	0/1:46,23:31:69:0.333:2	0/1:63,35:32:98:0.357:2	0/1:0,54:31:54:1.00:2	0/1:75,31:32:106:0.292:2
chr5	178540975	rs1054480	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:78,94:30:172:0.547:2	0/1:59,48:32:107:0.449:2	./.	0/1:98,81:29:180:0.453:2	0/1:114,77:29:191:0.403:2	./.	./.	./.	./.	0/1:3,166:30:169:0.982:2	0/1:92,59:30:152:0.391:2
chr5	178555045	rs2303644	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:23,24:33:47:0.511:2	0/1:24,12:32:36:0.333:2	./.	./.	0/1:56,45:31:101:0.446:2	./.	0/1:54,47:32:101:0.465:2	./.	0/1:53,24:33:78:0.312:2	./.	./.
chr5	178562967	rs1972715	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:44,35:32:79:0.443:2	0/1:34,11:31:45:0.244:2	./.	./.	0/1:109,80:31:189:0.423:2	./.	0/1:94,101:31:195:0.518:2	./.	0/1:69,50:31:119:0.420:2	./.	./.
chr5	178580549	rs61757478	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,19:31:29:0.655:2	./.
chr5	178581859	rs2278221	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:51,36:32:87:0.414:2	0/1:29,33:32:62:0.532:2	./.	./.	./.	./.	./.	./.	./.	0/1:1,98:31:99:0.990:2	0/1:54,62:31:119:0.534:2
chr5	178634547	rs66565583	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,9:31:17:0.529:2	./.	./.	0/1:50,43:31:93:0.462:2	./.	./.	0/1:35,42:32:77:0.545:2	./.	0/1:33,22:31:55:0.400:2
chr5	178634619	rs423552	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:32:60:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,123:32:123:1.00:2	0/1:0,99:31:99:1.00:2	0/1:52,48:32:100:0.480:2	0/1:0,86:31:86:1.00:2	0/1:2,120:32:122:0.984:2	0/1:1,75:33:76:0.987:2	0/1:0,107:33:107:1.00:2	0/1:0,51:32:51:1.00:2
chr5	178634672	rs398829	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,10:30:13:0.769:2	./.	./.	./.	0/1:19,25:30:44:0.568:2	./.	./.	./.	./.
chr5	178770777	rs140167371	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,4:33:26:0.154:2	./.	./.	./.	./.	./.
chr5	178770981	rs2271212	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:18,19:31:37:0.514:2	0/1:9,11:30:20:0.550:2	0/1:2,2:33:4:0.500:2	./.	./.	./.	0/1:14,12:32:26:0.462:2	0/1:0,44:32:44:1.00:2	0/1:25,27:32:52:0.519:2	./.	0/1:0,33:31:33:1.00:2
chr5	178771007	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,35:33:58:0.603:2	./.	./.
chr5	178996384	rs140249165	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:124,60:32:184:0.326:2	./.	./.	./.	./.	./.	./.	./.
chr5	179020622	rs4701135	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,83:33:85:0.976:2	./.	./.	0/1:28,24:33:52:0.462:2	./.
chr5	179025789	rs72824522	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,128:31:129:0.992:2	./.	./.	0/1:59,49:31:108:0.454:2	./.
chr5	179036433	rs17355294	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,26:30:59:0.441:2	./.	0/1:34,42:29:76:0.553:2	0/1:7,21:30:28:0.750:2	./.	./.
chr5	179036457	rs11541392	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:28:7:0.714:2	./.	0/1:17,38:26:55:0.691:2	./.	./.	./.	./.	./.	0/1:15,14:27:29:0.483:2
chr5	179043901	rs200543486	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,6:34:144:0.042:2	./.	./.	./.	./.
chr5	179044053	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,6:32:192:0.031:2	./.	./.	./.
chr5	179069468	rs62405726	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,65:30:68:0.956:2	0/1:0,28:30:28:1.00:2	0/1:5,3:29:8:0.375:2	0/1:0,48:29:48:1.00:2	./.	0/1:41,23:30:64:0.359:2	./.	./.	0/1:49,17:31:66:0.258:2	0/1:31,18:30:49:0.367:2	0/1:31,24:30:56:0.436:2
chr5	179069912	rs75942553	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,185:30:191:0.969:2	./.	./.	0/1:97,89:31:186:0.478:2	./.
chr5	179070147	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,3:32:34:0.088:2	./.	./.	0/1:73,8:32:81:0.099:2	0/1:53,6:33:59:0.102:2	./.	./.	./.	./.	./.
chr5	179070161	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,4:33:59:0.068:2	0/1:38,6:32:44:0.136:2	./.	0/1:53,3:33:56:0.054:2	./.	./.	./.
chr5	179071836	rs4990391	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,73:30:110:0.664:2	./.	./.	0/1:114,67:30:181:0.370:2	./.	./.	0/1:46,50:32:96:0.521:2
chr5	179071866	rs4990390	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,104:32:157:0.667:2	0/1:47,53:33:100:0.530:2	0/1:3,9:33:12:0.750:2	0/1:77,118:33:195:0.605:2	./.	0/1:132,62:32:194:0.320:2	./.	./.	0/1:151,41:33:192:0.214:2	0/1:121,65:32:186:0.349:2	0/1:76,51:32:127:0.402:2
chr5	179071892	rs4990389	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,5:31:199:0.025:2	./.	./.	./.
chr5	179071893	rs4990388	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,5:32:199:0.025:2	./.	./.	./.
chr5	179071925	rs141003025	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:145,38:32:183:0.208:2	./.	./.	./.	0/1:155,19:33:174:0.109:2	./.	./.
chr5	179071947	rs4645306	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:123,46:31:169:0.272:2	0/1:97,32:30:129:0.248:2	0/1:11,3:30:14:0.214:2	0/1:120,49:31:169:0.290:2	0/1:1,153:30:155:0.994:2	0/1:140,48:29:188:0.255:2	./.	0/1:90,102:31:192:0.531:2	0/1:114,59:30:173:0.341:2	0/1:123,54:31:177:0.305:2	0/1:114,60:30:174:0.345:2
chr5	179071958	rs7731123	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:150,12:32:162:0.074:2	0/1:111,17:33:128:0.133:2	0/1:10,5:33:15:0.333:2	./.	0/1:120,20:32:140:0.143:2	0/1:171,24:31:195:0.123:2	./.	0/1:163,30:33:193:0.155:2	0/1:163,12:32:175:0.069:2	./.	0/1:136,34:33:170:0.200:2
chr5	179072006	rs13153811	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:100,23:32:125:0.187:2	0/1:60,15:32:75:0.200:2	./.	0/1:99,26:33:125:0.208:2	0/1:96,7:29:103:0.068:2	0/1:138,30:32:168:0.179:2	./.	0/1:126,28:32:154:0.182:2	0/1:97,35:33:132:0.265:2	0/1:92,24:32:116:0.207:2	./.
chr5	179147472	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,6:33:189:0.032:2	./.	./.	./.	./.
chr5	179160223	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.
chr5	179193548	rs145980075	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,40:33:85:0.471:2
chr5	179193598	rs3797776	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,61:30:61:1.00:2	0/1:0,30:30:30:1.00:2	./.	./.	./.	0/1:2,47:29:49:0.959:2	0/1:42,32:31:74:0.432:2	./.	0/1:33,33:31:66:0.500:2	0/1:25,36:30:61:0.590:2	./.
chr5	179195867	rs41285557	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,22:31:53:0.415:2	./.	./.	./.	./.	./.	./.
chr5	179201298	rs61753466	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,11:31:25:0.440:2	0/1:13,9:32:22:0.409:2	./.	./.	./.	0/1:15,27:31:42:0.643:2	./.	./.	./.	./.	./.
chr5	179201847	rs6895902	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,30:31:30:1.00:2	0/1:0,15:32:16:1.00:2	./.	./.	./.	0/1:1,51:30:52:0.981:2	0/1:35,20:32:55:0.364:2	./.	0/1:32,28:31:60:0.467:2	0/1:15,17:32:32:0.531:2	./.
chr5	179228438	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:32:74:0.054:2	./.	./.	./.	./.
chr5	179228946	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:33:70:0.057:2	./.	./.
chr5	179260099	rs55793208	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,25:33:58:0.431:2	./.	./.	./.	./.	./.
chr5	179260153	rs4935	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,17:31:33:0.531:2	0/1:8,11:29:19:0.579:2	./.	0/1:0,31:28:31:1.00:2	0/1:9,9:30:18:0.500:2	0/1:0,37:29:37:1.00:2	0/1:8,19:30:27:0.704:2	./.	./.	0/1:17,9:31:26:0.346:2	0/1:0,44:31:44:1.00:2
chr5	179260213	rs4797	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,6:31:13:0.462:2	0/1:6,3:32:9:0.333:2	./.	0/1:0,11:30:11:1.00:2	0/1:10,6:30:16:0.375:2	0/1:0,13:31:13:1.00:2	./.	./.	./.	./.	0/1:0,19:31:19:1.00:2
chr5	179263445	rs104893941	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,31:31:54:0.574:2	./.	./.	./.	./.	./.	./.
chr5	179264555	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:32:111:0.036:2	./.	./.
chr5	179264731	rs10277	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:52,52:28:104:0.500:2	0/1:28,27:29:55:0.491:2	./.	0/1:4,136:29:140:0.971:2	0/1:54,65:29:119:0.546:2	0/1:2,179:29:181:0.989:2	0/1:90,93:30:183:0.508:2	./.	./.	0/1:69,54:28:123:0.439:2	0/1:1,144:29:145:0.993:2
chr5	179267949	rs248248	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,34:29:34:1.00:2	0/1:0,27:29:27:1.00:2	./.	0/1:2,55:29:57:0.965:2	0/1:39,15:28:54:0.278:2	0/1:0,55:29:55:1.00:2	0/1:27,11:27:38:0.289:2	0/1:50,29:29:79:0.367:2	0/1:0,43:30:43:1.00:2	0/1:19,17:28:36:0.472:2	0/1:0,17:27:17:1.00:2
chr5	179269011	rs61736195	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,43:29:85:0.518:2	./.	./.	0/1:49,33:29:82:0.402:2	./.
chr5	179280379	rs1650893	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:7,5:30:12:0.417:2	0/1:10,5:30:15:0.333:2	./.	0/1:0,22:29:22:1.00:2	./.	0/1:0,14:30:14:1.00:2	0/1:9,8:27:17:0.471:2	./.	./.	0/1:12,10:30:22:0.455:2	0/1:0,28:30:28:1.00:2
chr5	179285752	rs10060182	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,7:32:8:0.875:2	0/1:3,6:31:9:0.667:2	./.	0/1:0,37:30:38:1.00:2	0/1:9,9:28:18:0.500:2	0/1:21,16:31:37:0.432:2	./.	./.	./.	./.	0/1:0,17:32:17:1.00:2
chr5	179290845	rs30386	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,72:32:74:0.973:2	0/1:1,44:31:45:0.978:2	./.	0/1:1,70:31:71:0.986:2	0/1:36,44:32:80:0.550:2	0/1:46,52:31:100:0.531:2	./.	0/1:91,6:29:97:0.062:2	./.	./.	0/1:0,63:31:63:1.00:2
chr5	179294504	rs367629099	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,47:32:105:0.448:2
chr5	179296752	rs386015	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,23:29:58:0.397:2	./.	./.	0/1:21,15:30:36:0.417:2	./.
chr5	179297262	rs407437	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,26:30:65:0.400:2	./.	./.	0/1:24,14:30:38:0.368:2	./.
chr5	179297268	rs72813746	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,17:29:42:0.405:2	./.	./.	./.	./.	./.
chr5	179297352	rs384668	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,30:32:70:0.429:2	./.	./.	0/1:32,20:30:52:0.385:2	./.
chr5	179300131	rs269469	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,44:33:103:0.427:2	./.	./.	0/1:34,40:33:74:0.541:2	./.
chr5	179302921	rs61739270	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,71:30:151:0.470:2	./.	./.	./.	./.	./.
chr5	179305399	rs143930301	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,28:32:54:0.519:2	0/1:18,11:32:29:0.379:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	179305405	rs35754287	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,47:32:94:0.500:2	./.	./.	0/1:47,48:32:95:0.505:2	./.
chr5	179498595	rs3749821	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,8:33:10:0.800:2	0/1:4,4:31:8:0.500:2	./.	0/1:3,8:31:11:0.727:2	0/1:9,4:32:13:0.308:2	./.	0/1:8,4:34:12:0.333:2	0/1:9,12:31:21:0.571:2	0/1:5,4:32:9:0.444:2	0/1:0,15:31:15:1.00:2	0/1:0,12:32:12:1.00:2
chr5	179498658	rs3828698	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:29:4:0.750:2	./.	./.	0/1:0,2:32:2:1.00:2
chr5	179529124	rs7725201	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,57:33:60:0.950:2	0/1:0,39:31:39:1.00:2	./.	0/1:0,57:31:57:1.00:2	0/1:0,25:31:25:1.00:2	0/1:25,25:32:50:0.500:2	0/1:17,9:30:26:0.346:2	0/1:21,20:31:41:0.488:2	0/1:0,70:32:70:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,64:32:64:1.00:2
chr5	179554602	rs57288534	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:31,31:32:62:0.500:2	0/1:23,10:32:33:0.303:2	./.	0/1:64,77:32:141:0.546:2	./.	./.	./.	0/1:73,74:31:147:0.503:2	./.	./.	0/1:63,49:32:112:0.438:2
chr5	179555441	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:31:117:0.034:2
chr5	179563435	rs11546322	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:137,4:34:141:0.028:2	./.	./.	0/1:0,193:33:193:1.00:2	0/1:122,72:32:194:0.371:2	0/1:123,69:32:192:0.359:2	0/1:126,67:33:193:0.347:2	0/1:108,87:33:195:0.446:2	0/1:97,87:33:184:0.473:2	0/1:101,87:33:188:0.463:2	0/1:99,68:33:167:0.407:2
chr5	179663459	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:31:159:0.025:2	./.	./.	./.
chr5	179674439	rs147368192	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,5:33:28:0.179:2	0/1:16,11:32:27:0.407:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	179707483	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,4:32:103:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr5	179729519	rs1035411	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,12:30:44:0.273:2	./.	0/1:0,5:32:5:1.00:2	0/1:44,31:29:75:0.413:2	0/1:0,75:31:75:1.00:2	0/1:49,29:30:78:0.372:2	0/1:0,67:30:67:1.00:2	0/1:1,80:30:81:0.988:2	0/1:0,64:31:64:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,60:29:60:1.00:2
chr5	179734200	rs73343449	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:11,9:27:20:0.450:2	0/1:10,9:26:19:0.474:2	0/1:0,7:30:7:1.00:2	./.	0/1:34,27:27:61:0.443:2	./.	0/1:49,15:24:64:0.234:2	0/1:55,32:28:87:0.368:2	0/1:0,40:27:40:1.00:2	0/1:12,10:24:22:0.455:2	./.
chr5	179740827	rs2303007	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:31:13:0.462:2	./.	./.	0/1:8,3:33:11:0.273:2	./.	./.	./.	./.
chr5	179744009	rs2112594	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,24:30:52:0.471:2	./.	./.	./.	0/1:41,34:29:75:0.453:2	./.
chr5	179765491	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,4:24:15:0.267:2	./.
chr5	179956342	rs151053718	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,72:32:147:0.490:2	0/1:40,31:32:71:0.437:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	179980378	rs72814958	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,37:29:74:0.500:2	0/1:19,15:27:34:0.441:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	179996111	rs6877400	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,35:33:35:1.00:2	0/1:0,30:32:30:1.00:2	./.	0/1:1,44:32:45:0.978:2	0/1:0,45:31:45:1.00:2	0/1:20,22:31:42:0.524:2	0/1:0,23:32:23:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,46:33:46:1.00:2	0/1:32,21:32:53:0.396:2	0/1:0,48:33:48:1.00:2
chr5	180030313	rs307821	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,32:32:65:0.492:2	./.	0/1:33,39:32:72:0.542:2	./.	./.	./.	./.	0/1:19,35:31:54:0.648:2
chr5	180039606	rs1130379	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,26:32:66:0.394:2
chr5	180043388	rs1130378	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,31:33:73:0.425:2	0/1:31,34:32:65:0.523:2	0/1:8,3:34:11:0.273:2	0/1:53,60:32:113:0.531:2	./.	0/1:56,56:32:114:0.500:2	./.	./.	0/1:4,88:33:92:0.957:2	./.	./.
chr5	180046344	rs448012	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:33:3:0.667:2	0/1:27,42:32:69:0.609:2	0/1:51,67:31:119:0.568:2	0/1:30,16:32:46:0.348:2	0/1:34,34:32:68:0.500:2	0/1:0,59:31:59:1.00:2	0/1:26,24:33:50:0.480:2	0/1:0,38:31:38:1.00:2	0/1:1,21:30:22:0.955:2
chr5	180051003	rs307826	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,42:29:99:0.424:2	./.	0/1:70,30:27:100:0.300:2	./.	./.	0/1:62,37:29:99:0.374:2	./.	0/1:22,55:28:77:0.714:2
chr5	180052946	rs3736062	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:32,35:31:67:0.522:2	0/1:19,23:31:42:0.548:2	./.	./.	./.	./.	0/1:37,47:30:84:0.560:2	./.	./.	./.	./.
chr5	180057231	rs3736061	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,29:30:74:0.392:2	./.	0/1:27,37:30:64:0.578:2	./.	./.
chr5	180057293	rs34221241	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,21:29:40:0.525:2	0/1:12,6:27:18:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,20:29:55:0.364:2
chr5	180166461	rs10464105	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,39:32:92:0.424:2	0/1:29,25:33:54:0.463:2	0/1:0,10:33:10:1.00:2	0/1:0,130:33:130:1.00:2	0/1:0,140:32:140:1.00:2	0/1:0,141:33:141:1.00:2	0/1:0,171:33:171:1.00:2	0/1:0,190:32:190:1.00:2	0/1:0,130:33:130:1.00:2	0/1:0,93:33:93:1.00:2	0/1:0,119:33:119:1.00:2
chr5	180166599	rs11954074	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,22:31:44:0.500:2	0/1:11,13:31:24:0.542:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	180166677	rs11960429	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,26:32:53:0.491:2	0/1:17,14:31:31:0.452:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	180218668	rs634501	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,49:30:49:1.00:2	0/1:0,28:30:28:1.00:2	./.	0/1:1,70:30:71:0.986:2	0/1:55,32:30:87:0.368:2	0/1:40,42:29:82:0.512:2	./.	0/1:42,47:29:90:0.528:2	0/1:0,80:31:80:1.00:2	0/1:2,47:29:49:0.959:2	0/1:0,66:30:66:1.00:2
chr5	180219660	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,9:29:16:0.563:2	./.	./.	./.	./.	./.
chr5	180219825	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,4:29:15:0.267:2	./.
chr5	180276402	rs168726	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:32:33:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,13:32:13:1.00:2	0/1:21,13:32:34:0.382:2	0/1:0,14:32:14:1.00:2	0/1:0,30:32:30:1.00:2	0/1:16,15:32:31:0.484:2	0/1:18,11:32:29:0.379:2	0/1:0,30:33:30:1.00:2	0/1:0,26:33:26:1.00:2	0/1:22,22:33:44:0.500:2
chr5	180276625	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,4:29:112:0.036:2	./.	./.	./.	./.	./.	./.
chr5	180278393	rs705441	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,159:32:159:1.00:2	0/1:0,99:32:99:1.00:2	0/1:1,25:32:26:0.962:2	0/1:83,89:32:172:0.517:2	0/1:0,174:31:174:1.00:2	0/1:6,182:31:188:0.968:2	0/1:102,82:32:185:0.446:2	0/1:92,99:32:191:0.518:2	0/1:0,181:33:181:1.00:2	0/1:78,88:33:166:0.530:2	0/1:102,84:31:186:0.452:2
chr5	180278395	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,83:32:188:0.441:2
chr5	180278490	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,6:27:128:0.047:2	./.	./.
chr5	180329359	rs7735361	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,29:32:69:0.420:2	0/1:20,14:30:34:0.412:2	0/1:3,4:32:7:0.571:2	0/1:42,32:31:74:0.432:2	./.	./.	./.	./.	./.	0/1:33,21:32:54:0.389:2	0/1:40,32:32:72:0.444:2
chr5	180335814	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,49:32:90:0.544:2	./.	./.	./.	./.	./.
chr5	180338368	rs2276995	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:76,41:30:118:0.350:2	0/1:47,27:29:75:0.365:2	0/1:3,3:30:6:0.500:2	0/1:86,59:29:145:0.407:2	./.	./.	0/1:105,50:30:155:0.323:2	./.	./.	0/1:82,68:30:150:0.453:2	0/1:1,123:29:124:0.992:2
chr5	180374523	rs7724813	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,20:32:56:0.357:2	./.	./.	./.	0/1:53,58:32:111:0.523:2
chr5	180374534	rs3733756	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,49:33:110:0.445:2	0/1:37,23:32:60:0.383:2	0/1:8,3:31:11:0.273:2	0/1:58,59:32:117:0.504:2	./.	0/1:98,4:32:102:0.039:2	0/1:39,25:32:64:0.391:2	./.	./.	0/1:45,38:32:83:0.458:2	0/1:0,118:32:118:1.00:2
chr5	180374745	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:32:47:0.085:2	./.
chr5	180376208	rs112784326	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,18:27:110:0.165:2	./.	./.	./.	0/1:0,19:27:19:1.00:2
chr5	180376223	rs111695455	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,27:32:120:0.225:2	./.	./.	./.	0/1:0,23:33:23:1.00:2
chr5	180376937	rs151174174	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,13:31:32:0.406:2	./.	./.	./.	./.	./.
chr5	180376972	rs142207026	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,16:27:38:0.421:2	./.	./.	./.	0/1:15,32:27:47:0.681:2
chr5	180376974	rs146303629	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,16:33:39:0.410:2	./.	./.	./.	0/1:14,32:32:46:0.696:2
chr5	180376986	rs184474824	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,4:32:47:0.085:2	0/1:22,5:32:27:0.185:2	./.	0/1:36,4:26:40:0.100:2	0/1:43,7:29:50:0.140:2	./.	./.	./.	./.	0/1:46,4:33:50:0.080:2	0/1:46,14:33:60:0.233:2
chr5	180377018	rs7703365	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,64:32:65:0.985:2	0/1:5,27:32:32:0.844:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr5	180377122	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,6:32:120:0.050:2	./.
chr5	180377331	rs2278689	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,46:31:79:0.582:2	./.	./.	./.	0/1:0,43:31:43:1.00:2
chr5	180377470	rs113820381	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,20:31:39:0.513:2	./.	./.	./.	0/1:0,25:31:25:1.00:2
chr5	180377534	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,6:28:32:0.188:2	./.	./.	./.	./.	./.
chr5	180430869	rs80267416	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:88,73:32:161:0.453:2	0/1:49,48:32:97:0.495:2	./.	0/1:102,62:32:164:0.378:2	./.	./.	./.	./.	./.	./.	./.
chr5	180430895	rs11954740	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,57:29:119:0.483:2	./.	0/1:71,52:29:123:0.423:2	./.	0/1:58,62:29:120:0.517:2	./.	0/1:73,51:29:125:0.411:2
chr5	180431720	rs151034827	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,4:33:118:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr5	180431783	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,4:32:90:0.044:2	./.	./.	0/1:89,10:32:99:0.101:2	./.	./.	./.	./.
chr5	180432367	rs200172568	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:32:38:0.105:2	./.	./.	./.	./.	./.
chr5	180432402	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,6:30:61:0.098:2	./.	./.	./.	./.
chr5	180432404	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,6:32:61:0.098:2	./.	./.	./.	./.
chr5	180432416	rs7726150	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,85:32:90:0.944:2	0/1:3,56:32:59:0.949:2	0/1:5,4:33:9:0.444:2	0/1:50,38:31:88:0.432:2	0/1:36,16:32:52:0.308:2	./.	0/1:36,40:32:76:0.526:2	./.	0/1:49,47:32:96:0.490:2	0/1:2,73:33:76:0.973:2	0/1:8,96:32:104:0.923:2
chr5	180432564	rs73815153	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:85,68:31:153:0.444:2	0/1:44,45:31:89:0.506:2	./.	./.	./.	./.	./.	./.	./.	0/1:54,77:31:131:0.588:2	./.
chr5	180432662	rs7726604	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:82,64:32:146:0.438:2	0/1:36,39:32:75:0.520:2	./.	./.	./.	./.	./.	./.	./.	0/1:62,49:32:111:0.441:2	./.
chr5	180432666	rs7726607	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:87,64:28:152:0.424:2	0/1:38,35:29:73:0.479:2	./.	./.	./.	./.	./.	./.	./.	0/1:65,46:30:111:0.414:2	./.
chr5	180432747	rs59220426	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:100,70:30:172:0.412:2	0/1:50,44:30:94:0.468:2	./.	./.	./.	./.	./.	./.	./.	0/1:91,67:31:158:0.424:2	./.
chr5	180472498	rs28677846	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:31:34:1.00:2	0/1:2,21:31:23:0.913:2	0/1:3,3:31:6:0.500:2	0/1:52,32:31:84:0.381:2	0/1:46,30:31:76:0.395:2	./.	0/1:63,43:31:106:0.406:2	./.	0/1:43,29:31:72:0.403:2	0/1:0,32:29:32:1.00:2	0/1:0,47:30:47:1.00:2
chr5	180472513	rs6894087	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:28:41:1.00:2	0/1:2,28:28:30:0.933:2	0/1:5,3:31:8:0.375:2	0/1:55,34:29:89:0.382:2	0/1:57,36:29:93:0.387:2	./.	0/1:76,53:28:129:0.411:2	./.	0/1:48,33:29:81:0.407:2	0/1:0,44:28:44:1.00:2	0/1:1,45:28:47:0.978:2
chr5	180485353	rs3806869	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:74,72:32:146:0.493:2	0/1:47,40:32:87:0.460:2	./.	./.	./.	./.	./.	./.	./.	0/1:87,81:32:168:0.482:2	./.
chr5	180486247	rs6601166	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,3:31:5:0.600:2	0/1:0,2:30:2:1.00:2	./.	0/1:0,3:28:3:1.00:2	./.	./.	./.
chr5	180486785	rs10068763	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,16:27:27:0.593:2	0/1:9,9:26:18:0.500:2	./.	0/1:11,7:23:18:0.389:2	0/1:0,21:25:21:1.00:2	0/1:0,25:26:25:1.00:2	./.	0/1:0,21:26:21:1.00:2	0/1:0,21:26:21:1.00:2	0/1:6,7:27:13:0.538:2	./.
chr5	180486841	rs10054109	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,3:29:8:0.375:2	0/1:0,7:26:7:1.00:2	./.	0/1:0,5:29:5:1.00:2	0/1:0,3:33:3:1.00:2	./.	./.
chr5	180582604	rs2546423	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,19:30:43:0.442:2	0/1:2,153:31:155:0.987:2	0/1:0,181:30:181:1.00:2	./.	0/1:95,75:31:170:0.441:2	0/1:1,166:31:168:0.994:2	./.	0/1:0,167:31:167:1.00:2	./.
chr5	180622615	rs254460	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,24:31:24:1.00:2	0/1:0,31:30:31:1.00:2	./.	0/1:38,23:30:61:0.377:2	./.	0/1:26,21:31:47:0.447:2	./.	0/1:27,35:32:62:0.565:2	0/1:30,22:33:52:0.423:2	0/1:25,19:30:45:0.432:2	0/1:14,25:31:39:0.641:2
chr5	180626927	rs416574	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,42:33:42:1.00:2	./.	0/1:26,26:33:52:0.500:2	0/1:34,25:32:59:0.424:2	0/1:0,67:32:67:1.00:2	./.	0/1:36,31:33:67:0.463:2	0/1:0,57:33:57:1.00:2	0/1:27,21:32:48:0.438:2	0/1:0,57:32:57:1.00:2
chr5	180630512	rs13357554	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,41:33:41:1.00:2	0/1:1,20:33:21:0.952:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,13:31:28:0.464:2
chr5	180651231	rs6601178	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,39:28:64:0.609:2	./.	./.	0/1:22,34:30:56:0.607:2	./.	0/1:28,24:29:52:0.462:2
chr5	180659796	rs35719413	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,13:32:13:1.00:2	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:33:6:0.667:2
chr5	180660447	rs55928464	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,98:31:98:1.00:2	0/1:0,78:32:78:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,65:32:132:0.492:2
chr5	180660683	rs77567667	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,31:32:86:0.360:2	./.	./.	./.	./.	./.	./.	./.
chr5	180661256	rs185272	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:35:4:0.500:2	./.	./.	./.
chr5	180661980	rs17714046	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,25:32:66:0.379:2	./.	./.	./.	./.	./.	./.
chr5	180687212	rs918388	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,156:31:157:0.994:2	0/1:0,118:32:118:1.00:2	./.	./.	./.	0/1:95,88:31:183:0.481:2	0/1:99,75:31:174:0.431:2	./.	0/1:78,101:32:179:0.564:2	0/1:1,143:31:144:0.993:2	0/1:78,81:31:159:0.509:2
chr6	311938	rs11242786	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,51:32:200:0.255:2	./.	./.	./.
chr6	335175	rs2671431	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:32:65:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,94:31:94:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,102:31:102:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,114:32:114:1.00:2	0/1:1,137:31:138:0.993:2
chr6	348195	rs7768224	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,46:32:139:0.331:2	./.	./.	./.	./.	./.	./.	./.
chr6	348906	rs11242812	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,36:32:68:0.529:2	0/1:24,18:32:42:0.429:2	0/1:7,8:33:15:0.533:2	0/1:41,33:32:74:0.446:2	0/1:38,37:31:75:0.493:2	0/1:36,32:31:68:0.471:2	0/1:48,9:33:57:0.158:2	0/1:39,47:31:86:0.547:2	0/1:40,11:33:51:0.216:2	0/1:39,31:32:70:0.443:2	0/1:32,41:33:73:0.562:2
chr6	348917	rs201957282	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,16:31:70:0.229:2	./.	./.	./.	./.	./.	./.	./.
chr6	350829	rs1129085	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:38,32:33:70:0.457:2	0/1:22,28:32:50:0.560:2	./.	0/1:50,21:33:71:0.296:2	./.	0/1:57,14:32:71:0.197:2	./.	0/1:58,26:33:84:0.310:2	./.	0/1:58,18:33:76:0.237:2	0/1:106,24:34:130:0.185:2
chr6	398884	rs375133421	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,16:33:48:0.333:2	0/1:19,16:32:35:0.457:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	599209	rs61748570	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,61:28:64:0.953:2	./.	./.	./.	./.	./.
chr6	610088	rs1737556	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,69:30:69:1.00:2	./.	./.	./.	./.	./.
chr6	656143	rs1211554	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:21,19:30:40:0.475:2	0/1:12,12:30:24:0.500:2	./.	0/1:0,37:29:37:1.00:2	./.	0/1:1,32:30:33:0.970:2	0/1:0,30:30:30:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,32:30:32:1.00:2	0/1:20,19:30:39:0.487:2	0/1:0,51:30:51:1.00:2
chr6	656343	rs17136239	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:12,34:28:46:0.739:2	0/1:18,8:28:26:0.308:2	0/1:5,4:30:9:0.444:2	./.	0/1:0,23:27:23:1.00:2	./.	./.	./.	./.	./.	./.
chr6	1313470	rs4435985	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,63:31:148:0.426:2	./.	./.	0/1:94,5:33:99:0.051:2	./.	0/1:56,82:32:138:0.594:2	./.	0/1:36,35:32:71:0.493:2
chr6	1395043	rs2293783	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:95,67:32:162:0.414:2	0/1:53,34:31:87:0.391:2	0/1:9,14:31:23:0.609:2	0/1:66,79:32:145:0.545:2	./.	0/1:0,170:32:170:1.00:2	0/1:1,160:32:161:0.994:2	0/1:2,165:32:167:0.988:2	./.	0/1:91,79:32:171:0.465:2	./.
chr6	1612300	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:32:138:0.029:2	./.	./.	./.	./.
chr6	1612306	rs145620663	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:33:131:0.031:2	./.	./.	./.
chr6	1613529	rs984253	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,8:31:16:0.500:2	0/1:4,4:32:8:0.500:2	./.	0/1:9,8:31:17:0.471:2	0/1:6,12:31:18:0.667:2	0/1:0,16:31:16:1.00:2	./.	0/1:0,16:32:16:1.00:2	0/1:0,16:32:16:1.00:2	./.	0/1:0,31:32:31:1.00:2
chr6	1613686	rs2745599	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,8:31:14:0.571:2	./.	./.	0/1:5,6:33:11:0.545:2	0/1:13,5:32:18:0.278:2	0/1:0,13:32:13:1.00:2	./.	0/1:0,11:32:11:1.00:2	0/1:9,7:34:16:0.438:2	./.	0/1:7,12:32:19:0.632:2
chr6	1726657	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.	./.	./.	./.
chr6	1742794	rs3734739	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,50:29:51:0.980:2	0/1:0,45:29:45:1.00:2	0/1:0,4:27:4:1.00:2	0/1:39,30:30:69:0.435:2	0/1:3,55:29:58:0.948:2	./.	0/1:55,31:30:86:0.360:2	0/1:26,43:29:69:0.623:2	0/1:30,42:30:72:0.583:2	0/1:31,27:29:58:0.466:2	0/1:0,63:29:63:1.00:2
chr6	2623699	rs182198110	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,86:33:196:0.439:2	./.	./.
chr6	2623820	rs6902511	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,28:30:76:0.368:2	0/1:51,48:30:99:0.485:2	./.	0/1:34,64:30:98:0.653:2	0/1:54,40:31:94:0.426:2	0/1:52,47:31:99:0.475:2	./.	0/1:43,38:31:81:0.469:2
chr6	2623930	rs9503233	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:19,19:31:38:0.500:2	0/1:16,14:29:30:0.467:2	./.	./.	./.	./.	./.	0/1:35,22:30:57:0.386:2	./.	./.	./.
chr6	2624053	rs17135340	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:39,50:31:89:0.562:2	0/1:23,24:31:47:0.511:2	./.	0/1:38,42:31:80:0.525:2	./.	0/1:57,26:31:83:0.313:2	0/1:17,27:32:44:0.614:2	./.	./.	0/1:0,66:32:66:1.00:2	0/1:63,66:32:129:0.512:2
chr6	2671532	rs76537038	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,21:32:46:0.457:2	./.	./.	./.	./.	./.	./.
chr6	2675271	rs9328114	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:22,20:33:42:0.476:2	./.	./.	0/1:44,21:31:65:0.323:2	./.	./.	./.	0/1:18,35:30:53:0.660:2	0/1:24,16:31:40:0.400:2	0/1:20,4:31:24:0.167:2	./.
chr6	2685775	rs34953021	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,8:31:19:0.421:2	./.	0/1:79,50:32:129:0.388:2	./.	0/1:50,78:31:128:0.609:2	./.	0/1:58,36:31:94:0.383:2	./.	./.
chr6	2749494	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:33:79:0.051:2	./.
chr6	2769087	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:33:116:0.034:2	./.	./.
chr6	2783756	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,24:32:65:0.369:2	0/1:27,23:31:50:0.460:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	2784571	rs160703	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:30:11:1.00:2	./.	./.	./.	0/1:80,56:31:136:0.412:2	0/1:73,78:31:151:0.517:2	./.	0/1:39,55:30:95:0.585:2	0/1:46,53:30:100:0.535:2
chr6	2892130	rs61748573	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,9:32:23:0.391:2	./.	./.	./.	./.	./.	./.	0/1:13,5:31:18:0.278:2
chr6	2955802	rs2295769	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:20,18:33:38:0.474:2	0/1:15,6:32:21:0.286:2	./.	0/1:38,26:32:64:0.406:2	./.	0/1:32,24:32:56:0.429:2	0/1:18,23:32:41:0.561:2	./.	./.	0/1:19,20:33:39:0.513:2	0/1:23,27:32:50:0.540:2
chr6	2959513	rs2236277	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,14:31:14:1.00:2	0/1:71,76:31:147:0.517:2	0/1:0,87:31:88:1.00:2	./.	0/1:59,35:31:94:0.372:2	0/1:76,71:31:147:0.483:2	0/1:0,139:32:139:1.00:2	./.	0/1:80,76:32:157:0.487:2
chr6	3006807	rs4149360	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,43:30:105:0.410:2	./.	./.	./.	0/1:62,38:30:100:0.380:2	./.
chr6	3010298	rs28383623	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,67:33:151:0.444:2	./.	./.	./.	0/1:95,79:32:174:0.454:2	./.	./.	0/1:71,61:33:132:0.462:2
chr6	3010390	rs1143684	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:32:53:1.00:2	0/1:0,38:32:38:1.00:2	0/1:8,7:31:15:0.467:2	0/1:0,83:32:83:1.00:2	0/1:44,44:30:88:0.500:2	0/1:0,85:31:85:1.00:2	0/1:39,38:32:77:0.494:2	0/1:57,49:31:106:0.462:2	./.	0/1:0,75:32:75:1.00:2	0/1:1,73:32:74:0.986:2
chr6	3015790	rs1049115	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:29:45:1.00:2	0/1:0,17:28:17:1.00:2	0/1:8,4:28:12:0.333:2	0/1:0,52:29:52:1.00:2	0/1:36,28:29:64:0.438:2	0/1:0,53:30:53:1.00:2	0/1:35,32:30:67:0.478:2	0/1:48,20:28:68:0.294:2	./.	0/1:21,22:29:43:0.512:2	0/1:0,49:28:49:1.00:2
chr6	3017138	rs1130428	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,31:33:63:0.492:2	./.	./.	./.	0/1:41,24:33:65:0.369:2	./.	./.	0/1:33,24:32:57:0.421:2
chr6	3077141	rs2272990	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:28:54:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,103:30:103:1.00:2	0/1:3,82:29:85:0.965:2	0/1:0,70:30:70:1.00:2	0/1:0,58:30:58:1.00:2	0/1:0,81:30:81:1.00:2	0/1:0,73:31:73:1.00:2	0/1:0,68:30:68:1.00:2	0/1:0,76:30:76:1.00:2
chr6	3105901	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:33:129:0.031:2	./.	./.	./.	./.
chr6	3111166	rs55861377	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,30:31:64:0.476:2	./.	./.	./.	./.	0/1:24,22:31:46:0.478:2	./.	./.
chr6	3111167	rs55782213	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,31:29:63:0.492:2	./.	./.	./.	./.	0/1:23,22:30:45:0.489:2	./.	./.
chr6	3154833	rs373409094	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:183,11:32:194:0.057:2	./.	./.	./.	./.	./.	./.
chr6	3154871	rs17849443	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:92,76:29:168:0.452:2	0/1:81,71:29:152:0.467:2	0/1:24,15:29:39:0.385:2	0/1:1,176:29:177:0.994:2	0/1:93,76:28:169:0.450:2	0/1:1,140:29:141:0.993:2	./.	0/1:3,154:29:157:0.981:2	0/1:1,172:29:173:0.994:2	0/1:104,79:29:183:0.432:2	0/1:112,72:28:184:0.391:2
chr6	3157692	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	./.	./.
chr6	3225714	rs200624566	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,5:31:144:0.035:2	./.	./.	0/1:111,80:30:191:0.419:2	0/1:190,5:28:195:0.026:2	./.	./.	0/1:176,6:29:182:0.033:2	./.	./.
chr6	3225721	rs201922441	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:131,8:32:139:0.058:2	./.	0/1:183,8:32:191:0.042:2	./.	0/1:190,5:33:195:0.026:2	./.	0/1:187,7:32:194:0.036:2	0/1:179,6:34:185:0.032:2	./.	0/1:174,4:34:178:0.022:2
chr6	3226005	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,5:30:139:0.036:2	./.	./.
chr6	3255327	rs9503497	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,170:32:170:1.00:2	0/1:1,112:32:113:0.991:2	0/1:0,21:31:21:1.00:2	0/1:120,77:31:197:0.391:2	0/1:124,73:31:197:0.371:2	0/1:1,194:31:195:0.995:2	0/1:2,194:32:196:0.990:2	0/1:3,191:31:194:0.985:2	0/1:0,190:32:190:1.00:2	0/1:100,98:31:198:0.495:2	0/1:0,193:32:195:1.00:2
chr6	3255340	rs9503498	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,195:32:195:1.00:2	0/1:0,128:32:129:1.00:2	0/1:0,25:31:25:1.00:2	0/1:112,85:32:197:0.431:2	0/1:123,70:32:193:0.363:2	0/1:1,193:32:194:0.995:2	0/1:2,188:32:190:0.989:2	0/1:3,183:31:186:0.984:2	0/1:0,195:33:195:1.00:2	0/1:99,100:32:199:0.503:2	0/1:0,193:32:193:1.00:2
chr6	3259325	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,3:31:21:0.143:2
chr6	3264487	rs4959786	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:28:39:1.00:2	0/1:0,24:29:24:1.00:2	0/1:1,4:31:5:0.800:2	0/1:104,32:30:136:0.235:2	0/1:94,48:30:142:0.338:2	0/1:0,79:29:79:1.00:2	0/1:1,79:30:80:0.988:2	0/1:2,79:29:81:0.975:2	0/1:0,74:30:74:1.00:2	0/1:73,27:30:100:0.270:2	0/1:0,68:29:68:1.00:2
chr6	3264502	rs4959787	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:29:27:1.00:2	0/1:0,14:28:14:1.00:2	0/1:1,3:33:4:0.750:2	0/1:98,25:31:123:0.203:2	0/1:89,38:30:127:0.299:2	0/1:0,57:30:57:1.00:2	0/1:1,43:29:44:0.977:2	0/1:2,48:28:50:0.960:2	0/1:0,55:31:55:1.00:2	0/1:77,15:27:92:0.163:2	0/1:0,48:29:48:1.00:2
chr6	3264526	rs200271803	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,13:26:13:1.00:2	0/1:0,5:30:5:1.00:2	./.	0/1:80,9:27:89:0.101:2	0/1:81,18:30:99:0.182:2	0/1:0,21:27:21:1.00:2	0/1:4,32:28:36:0.889:2	0/1:3,28:28:31:0.903:2	0/1:2,13:26:15:0.867:2	0/1:69,6:30:75:0.080:2	0/1:1,25:24:26:0.962:2
chr6	3264527	rs4959789	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,14:30:14:1.00:2	0/1:0,5:32:5:1.00:2	./.	0/1:81,8:33:89:0.090:2	0/1:80,18:32:98:0.184:2	0/1:0,22:32:22:1.00:2	0/1:1,34:29:35:0.971:2	0/1:4,28:32:32:0.875:2	0/1:0,15:29:15:1.00:2	0/1:68,6:32:74:0.081:2	0/1:0,26:31:26:1.00:2
chr6	3273457	rs9503518	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,41:28:90:0.456:2	./.	./.	./.	./.	0/1:26,27:31:53:0.509:2	./.
chr6	3285286	rs10793841	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:32:32:1.00:2	0/1:0,24:31:25:1.00:2	0/1:0,2:34:2:1.00:2	0/1:20,35:32:55:0.636:2	0/1:37,17:33:54:0.315:2	0/1:1,51:32:52:0.981:2	0/1:1,44:33:45:0.978:2	0/1:0,72:32:72:1.00:2	0/1:0,47:34:47:1.00:2	0/1:31,15:32:46:0.326:2	0/1:0,47:32:47:1.00:2
chr6	3285296	rs41301847	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,18:28:50:0.360:2	./.	./.	./.	./.	./.
chr6	3287118	rs6910086	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:30:61:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,46:31:46:1.00:2	0/1:85,23:30:108:0.213:2	0/1:0,40:31:40:1.00:2	0/1:2,23:30:26:0.920:2	0/1:1,52:29:53:0.981:2	0/1:0,49:31:49:1.00:2	0/1:0,36:31:36:1.00:2	0/1:1,20:31:22:0.952:2
chr6	3727811	rs226959	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,51:32:132:0.386:2	0/1:36,32:32:68:0.471:2	0/1:9,15:32:24:0.625:2	0/1:0,141:32:141:1.00:2	./.	0/1:0,120:31:120:1.00:2	0/1:73,32:32:105:0.305:2	0/1:79,53:30:132:0.402:2	0/1:0,138:32:138:1.00:2	0/1:2,122:32:124:0.984:2	0/1:2,128:32:130:0.985:2
chr6	3851193	rs6597007	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,18:31:34:0.529:2	./.	0/1:11,9:30:20:0.450:2	./.
chr6	3851545	rs3196512	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:24,11:33:35:0.314:2	0/1:24,7:33:31:0.226:2	./.	./.	0/1:22,8:33:30:0.267:2	./.	./.	0/1:20,11:33:31:0.355:2	0/1:45,29:33:74:0.392:2	0/1:39,30:33:69:0.435:2	0/1:38,21:33:60:0.356:2
chr6	3984164	rs41301863	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:28:10:0.300:2	./.	./.	./.	0/1:0,9:26:9:1.00:2
chr6	3984338	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,55:32:133:0.414:2	./.	./.	./.	./.	./.
chr6	3984358	rs56098473	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,36:29:91:0.396:2	./.	./.	0/1:64,53:29:117:0.453:2	0/1:3,154:29:157:0.981:2
chr6	4031998	rs9503893	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,106:32:106:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,120:32:120:1.00:2	0/1:46,35:31:81:0.432:2	0/1:0,104:32:104:1.00:2	0/1:68,39:32:107:0.364:2	0/1:5,105:32:110:0.955:2	0/1:98,69:32:167:0.413:2	0/1:67,56:32:123:0.455:2	0/1:0,111:32:111:1.00:2
chr6	4042730	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:32:58:0.069:2	./.	./.	./.
chr6	4042739	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:32:57:0.070:2	./.	./.	./.
chr6	4042799	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:32:46:0.087:2	./.	./.	./.
chr6	4044109	rs12195092	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,46:31:89:0.517:2	./.	./.	./.	./.	./.	./.	./.
chr6	4044214	rs35085092	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,44:31:96:0.458:2	./.	0/1:73,43:31:116:0.371:2	./.	./.	./.	./.
chr6	4053044	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:33:125:0.032:2	./.	./.
chr6	4056657	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:32:186:0.022:2
chr6	4058979	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,4:30:86:0.047:2	./.	./.	./.	./.	./.	./.	./.
chr6	4059045	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:168,4:34:172:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr6	4060787	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:30:130:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	4069115	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:32:49:0.082:2	./.	./.	./.
chr6	4069133	rs10485172	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,18:32:30:0.600:2	./.	./.	./.	./.	./.	./.
chr6	4069166	rs595413	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:32:69:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,51:31:51:1.00:2	0/1:30,17:29:47:0.362:2	0/1:0,82:31:82:1.00:2	0/1:16,27:32:43:0.628:2	0/1:0,55:31:55:1.00:2	0/1:29,43:33:72:0.597:2	0/1:1,52:31:53:0.981:2	0/1:0,89:31:89:1.00:2
chr6	4069437	rs149145074	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,20:33:62:0.323:2	0/1:21,13:32:34:0.382:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	4069685	rs639905	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,36:29:60:0.600:2	./.	0/1:42,28:29:71:0.400:2	./.	0/1:45,52:30:97:0.536:2	./.	./.
chr6	4074634	rs590675	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,12:30:18:0.706:2	./.	0/1:9,7:29:16:0.438:2	./.	0/1:15,16:31:31:0.516:2	./.	./.
chr6	4087934	rs619483	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,13:32:33:0.394:2	./.	0/1:33,11:32:44:0.250:2	./.	0/1:30,25:33:55:0.455:2	./.	./.
chr6	4116262	rs7166	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,23:30:39:0.590:2	./.	0/1:39,25:30:64:0.391:2	./.	0/1:48,34:31:82:0.415:2	0/1:44,25:31:69:0.362:2	./.
chr6	4122249	rs643232	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,36:30:84:0.429:2	./.	0/1:56,40:31:96:0.417:2	./.	0/1:47,43:31:90:0.478:2	0/1:63,31:31:94:0.330:2	./.
chr6	4128075	rs116302350	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,12:33:21:0.571:2	0/1:8,4:32:12:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	4133855	rs3177253	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,34:31:92:0.370:2	./.	./.	./.	0/1:74,47:32:121:0.388:2	0/1:63,38:32:101:0.376:2	./.
chr6	4716016	rs3812179	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,21:31:21:1.00:2	./.	./.	0/1:29,12:32:41:0.293:2	0/1:9,7:32:16:0.438:2	0/1:21,17:31:38:0.447:2
chr6	4716037	rs3812178	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,35:32:35:1.00:2	./.	./.	0/1:35,25:33:60:0.417:2	0/1:14,10:33:24:0.417:2	0/1:20,18:32:38:0.474:2
chr6	4735035	rs13196069	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,22:30:45:0.489:2	0/1:16,15:29:31:0.484:2	./.	./.	0/1:23,29:30:52:0.558:2	0/1:0,82:30:82:1.00:2	0/1:25,35:30:60:0.583:2	./.	0/1:35,20:29:55:0.364:2	0/1:22,16:30:38:0.421:2	0/1:38,28:29:66:0.424:2
chr6	4735071	rs28360500	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,18:31:38:0.474:2	0/1:17,11:32:28:0.393:2	./.	./.	0/1:25,20:31:45:0.444:2	0/1:1,67:32:68:0.985:2	0/1:25,14:33:39:0.359:2	./.	0/1:30,21:30:51:0.412:2	0/1:16,21:33:38:0.568:2	0/1:33,32:32:65:0.492:2
chr6	4952551	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,5:30:169:0.030:2	./.	./.	./.	./.	./.
chr6	4996543	rs62385118	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,44:31:115:0.383:2	./.	./.	./.
chr6	4998963	rs1749144	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,52:33:52:1.00:2	0/1:0,26:32:26:1.00:2	./.	./.	./.	./.	./.	0/1:23,23:32:46:0.500:2	0/1:35,28:34:63:0.444:2	./.	./.
chr6	4999011	rs12214401	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,15:33:24:0.625:2	./.	./.	./.	./.
chr6	5086211	rs584962	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr6	5086558	rs436556	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	0/1:0,2:31:2:1.00:2	./.	0/1:0,4:30:4:1.00:2	./.
chr6	5109652	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:32:150:0.027:2	./.	./.	./.
chr6	5260936	rs2224391	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:4,8:32:12:0.667:2	./.	./.	0/1:9,10:32:19:0.526:2	./.	./.	0/1:8,13:32:21:0.619:2	./.	0/1:0,22:33:22:1.00:2	0/1:9,9:33:18:0.500:2	./.
chr6	5369142	rs41302853	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,31:30:70:0.443:2	./.	./.	./.	./.	./.
chr6	5404915	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:31:129:0.031:2	./.	./.	./.	./.
chr6	5431340	rs11243011	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,65:33:145:0.448:2	./.	0/1:88,67:33:155:0.432:2	./.	./.
chr6	5999396	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.	./.	./.	./.	./.	./.
chr6	6152137	rs5988	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:33:7:0.429:2	0/1:25,15:32:40:0.375:2	./.	0/1:0,55:32:55:1.00:2	0/1:32,21:33:53:0.396:2	./.	0/1:1,29:33:30:0.967:2	0/1:22,17:32:39:0.436:2	./.
chr6	6152140	rs5987	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,14:31:40:0.350:2	./.	./.	./.	./.	0/1:22,9:32:31:0.290:2	./.	./.
chr6	6174856	rs5986	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,89:33:192:0.464:2	./.	./.	0/1:92,98:33:190:0.516:2	0/1:107,87:33:194:0.448:2	./.	./.
chr6	6174866	rs5982	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:86,103:32:189:0.545:2	0/1:96,95:32:191:0.497:2	./.	0/1:1,176:33:177:0.994:2	0/1:107,80:33:187:0.428:2	0/1:97,97:32:194:0.500:2	./.	0/1:123,75:32:198:0.379:2	./.	./.	0/1:100,90:33:190:0.474:2
chr6	6222382	rs5981	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:32,31:30:63:0.492:2	0/1:20,29:30:49:0.592:2	0/1:8,3:30:11:0.273:2	./.	./.	./.	0/1:43,33:31:76:0.434:2	./.	./.	./.	./.
chr6	6318795	rs5985	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,15:33:41:0.366:2	0/1:9,7:32:16:0.438:2	./.	0/1:21,31:32:52:0.596:2	0/1:33,18:32:51:0.353:2	0/1:34,36:31:70:0.514:2	./.	./.	./.	./.	./.
chr6	6320808	rs2815822	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,84:32:85:0.988:2	0/1:0,44:32:44:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,74:33:74:1.00:2	0/1:1,49:31:50:0.980:2	0/1:0,96:32:96:1.00:2	./.	0/1:79,43:31:122:0.352:2	0/1:0,82:34:82:1.00:2	0/1:0,55:31:55:1.00:2	0/1:24,28:32:52:0.538:2
chr6	6321128	rs1024231	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,14:32:41:0.341:2	0/1:19,9:32:28:0.321:2	./.	0/1:0,23:33:23:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,26:31:26:1.00:2	0/1:25,16:32:42:0.390:2	0/1:36,18:32:55:0.333:2	0/1:0,28:33:28:1.00:2	0/1:0,12:32:12:1.00:2	0/1:31,14:32:45:0.311:2
chr6	6654849	rs1802323	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,66:30:173:0.382:2	./.	./.	./.	./.
chr6	7211818	rs1334576	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,6:32:23:0.261:2	./.	0/1:55,24:32:79:0.304:2	./.	0/1:38,36:33:74:0.486:2	0/1:73,62:33:135:0.459:2	./.	./.	0/1:70,47:33:117:0.402:2
chr6	7229346	rs2714315	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:30,35:29:65:0.538:2	0/1:17,12:28:29:0.414:2	./.	./.	0/1:58,47:28:105:0.448:2	./.	./.	0/1:50,35:27:85:0.412:2	0/1:36,29:30:65:0.446:2	0/1:0,56:28:56:1.00:2	./.
chr6	7229619	rs12192672	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:27,24:32:51:0.471:2	0/1:24,15:31:39:0.385:2	./.	./.	0/1:54,36:31:90:0.400:2	./.	./.	0/1:42,43:31:85:0.506:2	./.	0/1:21,26:31:47:0.553:2	./.
chr6	7230177	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:31:73:0.055:2	./.	./.	./.	./.	./.
chr6	7231770	rs34561875	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	7231843	rs9379084	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,13:27:22:0.591:2	0/1:11,9:29:20:0.450:2	0/1:0,3:19:3:1.00:2	0/1:7,5:25:12:0.417:2	./.	0/1:7,11:24:18:0.611:2	./.	./.	0/1:10,8:27:18:0.444:2	./.	./.
chr6	7246998	rs2281833	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	0/1:0,3:32:3:1.00:2
chr6	7247248	rs2256596	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:6,5:33:11:0.455:2	0/1:7,3:32:10:0.300:2	./.	./.	./.	./.	0/1:4,4:27:8:0.500:2	0/1:0,12:30:12:1.00:2	./.	0/1:0,8:32:8:1.00:2	0/1:6,7:32:13:0.538:2
chr6	7247332	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:149,4:31:153:0.026:2	./.	./.	./.	./.	./.	./.
chr6	7247344	rs35742417	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,83:29:171:0.485:2	./.	./.	0/1:83,80:29:163:0.491:2	./.	./.	./.
chr6	7310259	rs10004	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,31:32:79:0.392:2	0/1:26,26:30:52:0.500:2	./.	./.	0/1:47,51:31:98:0.520:2	./.	0/1:55,40:32:95:0.421:2	./.
chr6	7365731	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:33:109:0.037:2	./.	./.
chr6	7365747	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:33:120:0.033:2
chr6	7373434	rs34744890	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,39:32:75:0.520:2	./.	./.	./.	./.	./.
chr6	7374207	rs2876098	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,26:28:78:0.338:2	./.	./.
chr6	7387236	rs9406026	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,6:31:11:0.545:2	0/1:29,45:31:74:0.608:2	./.	./.	0/1:46,39:33:85:0.459:2	./.	0/1:38,47:33:85:0.553:2	0/1:0,66:33:66:1.00:2	./.
chr6	7393452	rs2274212	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:33:66:1.00:2	0/1:1,45:32:46:0.978:2	0/1:9,6:29:15:0.400:2	0/1:48,50:32:98:0.510:2	0/1:35,26:32:61:0.426:2	0/1:0,87:31:87:1.00:2	0/1:47,40:32:87:0.460:2	0/1:62,54:32:116:0.466:2	0/1:52,25:32:77:0.325:2	./.	0/1:0,90:32:90:1.00:2
chr6	7395350	rs55698032	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,22:34:56:0.393:2	./.	./.
chr6	7414583	rs56160149	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:30:10:0.500:2	./.	0/1:37,37:29:74:0.500:2	./.	./.	./.	./.	./.	./.
chr6	7542274	rs36087964	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,33:31:69:0.478:2	./.	./.	./.	./.
chr6	7563983	rs2806234	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,176:29:176:1.00:2	0/1:1,113:29:114:0.991:2	0/1:0,26:30:26:1.00:2	0/1:0,193:29:193:1.00:2	0/1:0,130:28:130:1.00:2	0/1:0,194:29:194:1.00:2	0/1:0,149:29:149:1.00:2	0/1:0,188:29:188:1.00:2	0/1:0,185:31:186:1.00:2	0/1:1,187:30:188:0.995:2	0/1:0,184:29:184:1.00:2
chr6	7565727	rs17604693	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,28:30:61:0.459:2	./.	./.	./.	./.	./.
chr6	7570692	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:33:91:0.044:2	./.
chr6	7572262	rs2076304	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:31:44:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,4:33:4:1.00:2	0/1:39,37:32:76:0.487:2	0/1:0,58:32:58:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,35:33:35:1.00:2	0/1:1,58:32:59:0.983:2	0/1:32,26:31:58:0.448:2	0/1:18,11:32:29:0.379:2	0/1:41,25:32:66:0.379:2
chr6	7576527	rs1016835	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:32:38:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,4:32:4:1.00:2	0/1:18,17:31:35:0.486:2	0/1:0,24:30:24:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,18:32:18:1.00:2	0/1:19,10:31:29:0.345:2	0/1:16,4:33:20:0.200:2	0/1:0,19:31:19:1.00:2	0/1:0,38:32:38:1.00:2
chr6	7576619	rs142494121	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:33:77:0.052:2	./.	./.	./.
chr6	7577260	rs2064217	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,36:31:107:0.336:2	./.	./.	./.	0/1:54,45:32:100:0.455:2	./.	./.	./.
chr6	7580958	rs2076299	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,17:30:41:0.425:2
chr6	7581064	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:34:73:0.055:2	./.	./.
chr6	7581636	rs6929069	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,27:31:52:0.519:2	./.	./.	./.	0/1:46,46:31:93:0.500:2	./.	./.	./.
chr6	7581641	rs142885240	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,18:31:41:0.439:2	0/1:14,20:32:34:0.588:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	7583885	rs28763969	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,10:33:19:0.526:2	./.	./.	./.	0/1:17,5:33:22:0.227:2	./.	./.
chr6	7584617	rs2076300	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,65:33:65:1.00:2	0/1:0,42:32:42:1.00:2	0/1:2,5:32:7:0.714:2	./.	0/1:24,26:32:50:0.520:2	0/1:0,76:32:76:1.00:2	0/1:4,52:32:56:0.929:2	0/1:37,40:33:77:0.519:2	./.	./.	./.
chr6	7585967	rs2744380	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,21:31:21:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,2:33:2:1.00:2	0/1:6,11:33:17:0.647:2	0/1:0,19:30:19:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,25:31:25:1.00:2	0/1:11,14:33:25:0.560:2	0/1:13,13:32:26:0.500:2	0/1:0,22:31:22:1.00:2	0/1:1,13:31:14:0.929:2
chr6	7590624	rs2757594	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,39:29:41:0.951:2	0/1:1,32:31:33:0.970:2	0/1:6,6:28:12:0.500:2	./.	0/1:37,32:30:69:0.464:2	0/1:34,29:29:63:0.460:2	0/1:0,39:30:39:1.00:2	0/1:44,35:30:79:0.443:2	./.	./.	./.
chr6	7593998	rs140320629	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.
chr6	7594060	rs145456775	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,43:31:106:0.406:2	./.	./.	./.	./.	./.
chr6	7601720	rs3734586	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,20:32:42:0.476:2	./.	./.	./.	0/1:42,19:32:61:0.311:2	./.	./.	0/1:27,31:32:58:0.534:2
chr6	7862556	rs61733611	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,29:33:54:0.547:2	./.	./.
chr6	7862589	rs17558	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,17:28:54:0.315:2	0/1:50,29:30:79:0.367:2	./.	./.	./.	./.
chr6	7862631	rs17557	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:24,17:30:41:0.415:2	0/1:10,8:31:18:0.444:2	./.	0/1:31,27:31:58:0.466:2	./.	0/1:27,18:32:45:0.400:2	0/1:0,64:32:64:1.00:2	0/1:32,35:31:67:0.522:2	0/1:0,57:32:57:1.00:2	./.	0/1:36,22:31:58:0.379:2
chr6	7883386	rs9502656	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,29:30:66:0.439:2	./.	./.	./.	./.	./.	./.	./.
chr6	7884653	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:32:93:0.043:2	./.	./.	./.	./.	./.
chr6	8090485	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,3:33:55:0.055:2	./.	./.	./.
chr6	8413890	rs3757099	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,7:34:19:0.368:2	./.	0/1:14,11:33:25:0.440:2	0/1:14,20:32:34:0.588:2	./.
chr6	9903626	rs56839110	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:30,25:33:55:0.455:2	0/1:22,9:33:31:0.290:2	0/1:5,4:31:9:0.444:2	./.	./.	./.	./.	0/1:31,28:32:59:0.475:2	./.	./.	./.
chr6	9933492	rs9477310	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,13:32:30:0.433:2	0/1:4,5:32:9:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	10398707	rs3734391	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,74:28:164:0.454:2	./.	0/1:68,79:28:147:0.537:2	./.	0/1:109,68:29:177:0.384:2	./.	./.	0/1:104,79:30:183:0.432:2
chr6	10410329	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,2:34:5:0.400:2	./.	./.
chr6	10419640	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:146,25:10:171:0.146:2	./.	./.	./.	./.	./.	./.
chr6	10430171	rs303061	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,17:32:43:0.395:2	./.	0/1:20,17:32:37:0.459:2	./.	./.	./.	./.
chr6	10509380	rs66794874	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,16:30:39:0.410:2	0/1:13,9:33:22:0.409:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	10556872	rs2230906	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:23,33:31:56:0.589:2	0/1:27,14:30:41:0.341:2	./.	./.	./.	./.	0/1:2,51:31:53:0.962:2	./.	0/1:42,44:32:86:0.512:2	./.	./.
chr6	10557343	rs35318346	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,11:31:33:0.333:2	0/1:18,8:29:26:0.308:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	10586376	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:32:65:0.062:2	./.	./.	./.	./.
chr6	10586929	rs594495	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,20:30:66:0.303:2	./.	./.
chr6	10587038	rs539351	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:32:94:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,159:33:159:1.00:2	0/1:2,133:32:135:0.985:2	0/1:0,148:33:148:1.00:2	0/1:0,144:33:144:1.00:2	0/1:0,186:32:186:1.00:2	0/1:0,171:33:171:1.00:2	0/1:0,139:33:139:1.00:2	0/1:0,161:33:161:1.00:2
chr6	10587056	rs71548508	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:57,46:33:103:0.447:2	0/1:37,29:32:66:0.439:2	./.	./.	./.	./.	0/1:6,165:33:171:0.965:2	./.	0/1:84,103:34:187:0.551:2	./.	./.
chr6	10634181	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,4:33:107:0.037:2	./.	./.	./.	./.	./.	./.
chr6	10704994	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,94:30:189:0.497:2
chr6	10709632	rs72821574	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,18:30:51:0.353:2	./.	./.	./.	./.	./.	./.	./.
chr6	10724873	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:31:80:0.050:2	./.	./.
chr6	10755401	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,5:30:178:0.028:2	./.	./.	0/1:178,5:31:183:0.027:2	./.	./.
chr6	10756712	rs143087269	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:89,5:32:94:0.053:2	./.	0/1:147,11:31:158:0.070:2	0/1:132,11:30:143:0.077:2	0/1:138,15:32:154:0.098:2	0/1:125,11:33:136:0.081:2	0/1:178,11:34:189:0.058:2	0/1:166,18:34:184:0.098:2	0/1:131,12:33:143:0.084:2	0/1:173,5:33:178:0.028:2
chr6	10756728	rs72821581	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:88,6:32:94:0.064:2	./.	0/1:151,15:29:166:0.090:2	0/1:132,17:30:149:0.114:2	0/1:138,27:31:165:0.164:2	0/1:120,23:32:143:0.161:2	0/1:180,14:32:194:0.072:2	0/1:165,25:32:190:0.132:2	0/1:144,8:32:152:0.053:2	0/1:169,14:30:183:0.077:2
chr6	10764727	rs126405	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,33:30:33:1.00:2	0/1:1,17:29:18:0.944:2	./.	0/1:0,41:29:41:1.00:2	0/1:0,43:30:43:1.00:2	0/1:30,17:30:47:0.362:2	0/1:52,29:29:81:0.358:2	0/1:39,17:27:56:0.304:2	0/1:51,20:29:71:0.282:2	0/1:15,22:30:37:0.595:2	0/1:0,35:29:35:1.00:2
chr6	10770352	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:33:108:0.037:2
chr6	10796531	rs55950618	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,12:32:21:0.571:2
chr6	10874814	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:173,4:31:177:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr6	10891781	rs1538441	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,170:31:170:1.00:2	0/1:0,98:31:98:1.00:2	0/1:0,19:29:19:1.00:2	0/1:0,161:30:161:1.00:2	0/1:0,124:29:124:1.00:2	0/1:0,181:29:181:1.00:2	0/1:0,128:29:129:1.00:2	0/1:0,188:30:188:1.00:2	0/1:0,193:31:193:1.00:2	0/1:0,135:29:135:1.00:2	0/1:0,188:30:188:1.00:2
chr6	10906256	rs4713039	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:16,6:34:22:0.273:2	0/1:6,15:32:21:0.714:2	./.	0/1:21,12:32:33:0.364:2	./.	0/1:18,12:32:30:0.400:2	./.	./.	./.	./.	0/1:27,28:31:55:0.509:2
chr6	10924756	rs148762988	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,8:32:20:0.400:2	0/1:7,6:32:13:0.462:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	10955408	rs1225746	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,36:32:67:0.545:2	0/1:16,16:32:32:0.500:2	0/1:0,6:32:6:1.00:2	0/1:0,73:31:73:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,51:31:51:1.00:2	0/1:2,41:31:43:0.953:2	0/1:0,89:32:89:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,65:31:65:1.00:2
chr6	11005686	rs2295601	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,28:30:67:0.424:2	0/1:18,31:31:49:0.633:2	0/1:4,9:29:13:0.692:2	0/1:41,28:28:69:0.406:2	0/1:1,45:29:46:0.978:2	./.	0/1:65,29:29:94:0.309:2	0/1:44,53:29:98:0.546:2	./.	0/1:33,29:31:62:0.468:2	./.
chr6	11105238	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,3:37:52:0.058:2	./.	./.	./.	./.
chr6	11105763	rs76843344	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,101:33:188:0.537:2
chr6	11134636	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:33:101:0.040:2	./.	./.
chr6	11185533	rs1050775	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,169:31:170:0.994:2	0/1:0,121:31:121:1.00:2	0/1:21,14:31:35:0.400:2	./.	0/1:101,92:29:193:0.477:2	0/1:105,87:30:192:0.453:2	0/1:114,85:30:199:0.427:2	0/1:99,93:30:192:0.484:2	0/1:100,86:31:186:0.462:2	0/1:105,87:31:192:0.453:2	0/1:0,174:30:175:1.00:2
chr6	11190452	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,4:32:143:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr6	11190626	rs941982	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:28:57:1.00:2	0/1:0,48:28:48:1.00:2	0/1:0,10:28:10:1.00:2	0/1:29,38:27:68:0.567:2	0/1:50,34:26:84:0.405:2	0/1:1,57:27:58:0.983:2	0/1:0,65:27:65:1.00:2	0/1:34,36:29:70:0.514:2	0/1:1,67:29:68:0.985:2	0/1:29,21:29:50:0.420:2	0/1:0,80:29:80:1.00:2
chr6	11193860	rs16871074	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,54:31:130:0.415:2	./.	./.	0/1:94,69:32:163:0.423:2	0/1:81,70:32:151:0.464:2	./.	./.
chr6	11213832	rs3734404	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,103:29:183:0.563:2	0/1:80,73:29:153:0.477:2	./.	0/1:90,90:30:180:0.500:2	0/1:0,139:29:139:1.00:2	./.	./.
chr6	11538534	rs821443	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:31:3:1.00:2	0/1:11,4:27:15:0.267:2	0/1:5,6:29:11:0.545:2	./.	0/1:2,4:26:6:0.667:2	./.	./.	./.	./.
chr6	11723636	rs2076185	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,27:31:58:0.466:2	./.	./.	./.	./.	./.	./.
chr6	12120445	rs2228215	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,15:32:38:0.395:2	./.	0/1:0,44:33:44:1.00:2	0/1:30,21:32:51:0.412:2	0/1:29,26:32:55:0.473:2	./.	./.	./.
chr6	12120536	rs61738287	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:87,64:33:151:0.424:2	./.	./.	./.	./.	./.	./.
chr6	12120588	rs2228209	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,62:32:156:0.397:2	./.	0/1:1,146:31:147:0.993:2	0/1:86,66:31:152:0.434:2	0/1:92,77:32:169:0.456:2	./.	./.	./.
chr6	12120635	rs140801617	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,35:33:67:0.522:2	0/1:33,20:32:53:0.377:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	12120638	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:128:0.031:2	./.	./.	./.	./.	./.
chr6	12121055	rs184153060	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:31:12:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	12121113	rs34221818	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,46:31:82:0.561:2	./.	./.	./.	./.	./.	./.
chr6	12121697	rs199542147	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,26:30:67:0.388:2	./.
chr6	12121815	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,18:31:42:0.429:2	./.	./.	./.	./.	./.	./.
chr6	12122174	rs2228210	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,44:31:90:0.489:2	./.	0/1:1,75:30:76:0.987:2	0/1:50,26:30:76:0.342:2	0/1:57,37:30:94:0.394:2	./.	./.	./.
chr6	12122531	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:33:142:0.028:2	./.	./.	./.	./.	./.
chr6	12122557	rs34520269	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,62:32:138:0.449:2	0/1:55,36:32:91:0.396:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	12122645	rs6900196	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:30:81:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,111:30:111:1.00:2	0/1:0,69:29:69:1.00:2	0/1:0,73:29:73:1.00:2	0/1:0,90:30:90:1.00:2	0/1:0,101:29:101:1.00:2	0/1:0,117:31:117:1.00:2	0/1:0,75:29:75:1.00:2	0/1:0,106:29:106:1.00:2
chr6	12122773	rs2228211	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,30:29:50:0.600:2	0/1:18,19:29:37:0.514:2	0/1:4,4:30:8:0.500:2	0/1:53,19:27:72:0.264:2	./.	./.	./.	./.	0/1:24,32:28:56:0.571:2	0/1:25,24:29:49:0.490:2	./.
chr6	12123049	rs2228219	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,8:31:20:0.400:2
chr6	12123114	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,4:32:37:0.108:2	./.	./.	./.
chr6	12123249	rs2228220	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,40:33:40:1.00:2
chr6	12123538	rs34258344	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,16:30:46:0.348:2
chr6	12124587	rs2228212	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:26,22:32:48:0.458:2	0/1:23,13:32:36:0.361:2	./.	./.	0/1:22,28:31:50:0.560:2	./.	0/1:16,28:32:44:0.636:2	0/1:23,18:32:41:0.439:2	0/1:31,22:30:53:0.415:2	./.	./.
chr6	12124855	rs2228213	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,32:30:74:0.432:2	./.	0/1:2,82:30:84:0.976:2	0/1:70,43:30:113:0.381:2	0/1:55,53:30:108:0.491:2	./.	./.	./.
chr6	12125772	rs1126472	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,14:29:32:0.438:2	0/1:1,59:28:60:0.983:2
chr6	12131008	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:33:44:0.091:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	12162030	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:33:160:0.025:2	./.	./.
chr6	12164612	rs1042054	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,38:32:78:0.487:2
chr6	12290906	rs73722760	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:38,6:23:44:0.136:2	./.	./.	./.	0/1:21,8:14:29:0.276:2	./.	0/1:37,11:20:48:0.229:2	0/1:35,11:18:46:0.239:2	0/1:51,6:20:57:0.105:2	./.	0/1:45,6:22:51:0.118:2
chr6	12294258	rs5369	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:33:33:1.00:2	0/1:0,26:32:26:1.00:2	0/1:1,7:32:8:0.875:2	0/1:0,46:33:46:1.00:2	0/1:0,22:33:22:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,44:33:45:1.00:2	0/1:0,51:33:51:1.00:2	0/1:0,70:33:70:1.00:2	0/1:0,39:32:39:1.00:2	0/1:31,21:33:52:0.404:2
chr6	12296255	rs5370	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,30:30:74:0.411:2	0/1:45,38:30:83:0.458:2	0/1:32,33:29:65:0.508:2	./.	0/1:32,48:31:80:0.600:2	0/1:37,24:31:61:0.393:2	./.	./.
chr6	12749886	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,4:27:57:0.070:2	./.	./.	./.	./.	./.	./.	./.
chr6	13316909	rs80189640	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,23:32:50:0.460:2	./.	./.	0/1:24,23:32:47:0.489:2	./.	./.	./.
chr6	13470113	rs766773	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,101:33:101:1.00:2	0/1:0,60:33:61:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,109:32:109:1.00:2	0/1:0,109:32:109:1.00:2	0/1:0,116:32:116:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,123:32:123:1.00:2	0/1:1,100:33:101:0.990:2	0/1:0,92:33:92:1.00:2	0/1:0,109:33:109:1.00:2
chr6	13470424	rs142692489	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,24:29:56:0.429:2
chr6	13588644	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:31:77:0.052:2	./.	./.	./.	./.	./.
chr6	13599303	rs3757261	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,38:30:40:0.950:2	0/1:1,33:31:34:0.971:2	./.	0/1:1,51:31:52:0.981:2	0/1:0,81:30:81:1.00:2	./.	0/1:40,45:30:85:0.529:2	./.	./.	0/1:19,28:31:47:0.596:2	./.
chr6	13612078	rs34162626	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,31:32:84:0.369:2	./.	./.	./.
chr6	13659079	rs204232	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,16:30:48:0.333:2	./.	0/1:34,14:31:48:0.292:2	0/1:0,31:30:31:1.00:2	0/1:0,30:29:30:1.00:2	0/1:23,13:31:36:0.361:2	./.	0/1:18,12:31:30:0.400:2
chr6	13711279	rs6905991	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:22:7:0.571:2	./.	./.	0/1:37,29:27:66:0.439:2	0/1:31,18:26:49:0.367:2	0/1:36,21:28:57:0.368:2	0/1:37,37:29:74:0.500:2	0/1:36,18:29:55:0.333:2	0/1:41,24:28:65:0.369:2
chr6	13792209	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:31:85:0.047:2	./.	./.	./.	./.	./.
chr6	13794110	rs4715568	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:32:50:1.00:2	0/1:0,28:32:28:1.00:2	0/1:5,4:31:9:0.444:2	0/1:0,60:32:60:1.00:2	0/1:35,10:32:45:0.222:2	0/1:0,62:31:62:1.00:2	0/1:0,43:32:43:1.00:2	0/1:46,24:32:70:0.343:2	./.	0/1:37,27:32:64:0.422:2	0/1:0,83:32:83:1.00:2
chr6	13801615	rs3180196	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,13:29:42:0.310:2	./.	./.	./.	./.	./.	./.	0/1:28,21:30:49:0.429:2
chr6	13977401	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:33:79:0.051:2	./.	./.	./.	./.	./.
chr6	13978275	rs280162	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:33,32:33:66:0.492:2	0/1:24,18:33:42:0.429:2	./.	0/1:0,75:33:75:1.00:2	./.	0/1:50,19:32:69:0.275:2	0/1:0,74:32:74:1.00:2	0/1:48,51:33:99:0.515:2	./.	0/1:0,46:33:46:1.00:2	0/1:55,52:32:107:0.486:2
chr6	13978618	rs280163	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,59:30:101:0.584:2	0/1:33,41:30:74:0.554:2	0/1:11,10:30:21:0.476:2	0/1:2,109:29:111:0.982:2	./.	0/1:66,47:28:113:0.416:2	0/1:3,84:29:87:0.966:2	0/1:62,41:29:103:0.398:2	./.	0/1:0,82:30:82:1.00:2	0/1:75,69:30:144:0.479:2
chr6	13978837	rs280164	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,50:32:88:0.568:2	0/1:34,27:32:61:0.443:2	0/1:4,4:31:8:0.500:2	0/1:1,96:32:97:0.990:2	./.	0/1:36,41:31:77:0.532:2	0/1:3,71:32:74:0.959:2	0/1:49,36:32:85:0.424:2	./.	0/1:2,74:32:76:0.974:2	0/1:57,47:32:104:0.452:2
chr6	13978854	rs2147200	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:40,34:32:74:0.459:2	0/1:19,22:31:41:0.537:2	./.	./.	0/1:28,28:31:56:0.500:2	0/1:39,27:30:66:0.409:2	./.	0/1:35,37:32:72:0.514:2	0/1:0,87:33:87:1.00:2	./.	0/1:46,50:32:96:0.521:2
chr6	13979526	rs2147201	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:13,5:33:18:0.278:2	0/1:5,6:33:11:0.545:2	./.	./.	0/1:8,5:30:13:0.385:2	./.	./.	0/1:5,5:32:10:0.500:2	0/1:0,5:34:5:1.00:2	./.	0/1:7,3:35:10:0.300:2
chr6	14118034	rs111804875	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.
chr6	14131804	rs7743206	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,48:32:97:0.495:2	./.	./.	./.	0/1:63,60:32:123:0.488:2
chr6	14131854	rs35118414	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,35:33:88:0.402:2	./.	./.	./.	./.
chr6	15452291	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:33:60:0.067:2	./.	./.
chr6	15468876	rs7768621	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,59:30:127:0.465:2	./.	./.	0/1:70,66:30:136:0.485:2	./.	0/1:69,44:30:113:0.389:2	./.
chr6	15496662	rs742099	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,10:31:21:0.476:2	0/1:13,22:32:35:0.629:2	./.	0/1:20,19:32:39:0.487:2	0/1:21,22:31:43:0.512:2	0/1:1,32:30:33:0.970:2	./.	./.	0/1:13,19:33:32:0.594:2	./.	./.
chr6	15501158	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:32:43:0.093:2	./.
chr6	15507435	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,5:31:111:0.045:2	./.	./.	./.	./.	./.
chr6	15513482	rs2235258	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,36:29:37:1.00:2	0/1:0,28:30:28:1.00:2	./.	0/1:22,33:29:55:0.600:2	0/1:0,33:28:34:1.00:2	0/1:0,38:29:38:1.00:2	0/1:14,23:30:37:0.622:2	0/1:11,18:29:29:0.621:2	0/1:18,18:31:36:0.500:2	0/1:0,37:29:37:1.00:2	0/1:0,24:30:24:1.00:2
chr6	15517425	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,3:30:17:0.176:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	15524698	rs16876573	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,80:30:145:0.552:2	./.	0/1:102,81:31:183:0.443:2	./.	./.
chr6	15663111	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	15663118	rs11558324	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,13:31:22:0.591:2	./.	./.	0/1:16,10:32:26:0.385:2	0/1:0,9:31:9:1.00:2	0/1:8,10:32:18:0.556:2	0/1:8,5:31:13:0.385:2	./.	./.	./.	./.
chr6	16141919	rs139469255	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,77:31:149:0.517:2	./.	./.	./.	./.	./.	./.
chr6	16145325	rs9370867	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:39,34:33:74:0.466:2	0/1:33,15:29:48:0.313:2	./.	./.	0/1:44,55:33:99:0.556:2	0/1:0,80:32:80:1.00:2	0/1:0,114:32:114:1.00:2	0/1:39,54:33:93:0.581:2	./.	0/1:25,38:32:63:0.603:2	0/1:41,47:31:88:0.534:2
chr6	16145473	rs1060901	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,84:31:191:0.440:2	./.	./.	./.	./.	0/1:85,80:32:165:0.485:2
chr6	16279097	rs739473	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,24:27:54:0.444:2	./.
chr6	16286023	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	16290761	rs1042391	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,60:30:114:0.526:2	0/1:26,20:31:46:0.435:2	0/1:14,15:30:29:0.517:2	0/1:90,59:30:149:0.396:2	0/1:85,92:31:178:0.520:2	0/1:0,151:30:151:1.00:2	0/1:96,79:31:176:0.451:2	0/1:89,69:31:158:0.437:2	./.	0/1:0,124:31:124:1.00:2	0/1:60,94:31:154:0.610:2
chr6	16306751	rs16885	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,68:31:131:0.519:2	0/1:63,38:30:101:0.376:2	./.	0/1:4,104:31:108:0.963:2	./.	./.	0/1:52,39:30:91:0.429:2	./.
chr6	16306866	rs2072737	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,26:30:53:0.491:2	./.
chr6	16327330	rs2075974	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:21,15:32:36:0.417:2	0/1:6,12:33:18:0.667:2	./.	./.	./.	./.	./.	0/1:22,27:32:49:0.551:2	./.	./.	0/1:21,17:32:38:0.447:2
chr6	16327615	rs179990	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,47:28:103:0.456:2	0/1:34,23:29:57:0.404:2	0/1:0,12:28:12:1.00:2	0/1:76,62:29:138:0.449:2	0/1:0,108:29:108:1.00:2	0/1:0,104:28:104:1.00:2	0/1:0,137:29:137:1.00:2	0/1:118,57:28:176:0.326:2	./.	0/1:0,74:28:74:1.00:2	0/1:0,88:28:88:1.00:2
chr6	16327903	rs3817753	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,6:30:17:0.353:2	0/1:11,11:30:22:0.500:2	./.	./.	./.	./.	./.	./.
chr6	16327909	rs59310777	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,10:30:22:0.455:2	0/1:5,5:33:10:0.500:2	./.	./.	./.	./.	./.
chr6	16327915	rs11969612	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,5:33:21:0.238:2	./.	./.	./.	./.	./.	./.	./.
chr6	16328068	rs2072736	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,9:30:18:0.500:2	0/1:21,21:28:42:0.500:2	./.	./.	./.	./.	./.
chr6	17421883	rs145770840	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:31:140:0.029:2	./.
chr6	17541324	rs34206659	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,50:33:70:0.714:2	./.	./.	./.	./.	./.	./.	./.
chr6	17543302	rs9256	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,53:33:79:0.671:2	0/1:22,31:32:53:0.585:2	0/1:0,11:33:11:1.00:2	0/1:37,43:32:80:0.538:2	0/1:21,23:32:44:0.523:2	0/1:39,45:32:84:0.536:2	0/1:28,34:33:62:0.548:2	0/1:33,38:32:71:0.535:2	./.	0/1:1,108:33:109:0.991:2	0/1:0,141:33:141:1.00:2
chr6	17606163	rs201711651	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:150,4:32:154:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr6	17616907	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:32:168:0.024:2
chr6	17626084	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,10:19:170:0.059:2
chr6	17629616	rs942467	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:33:28:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,11:34:11:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,37:32:37:1.00:2
chr6	17633033	rs61744976	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,17:32:17:1.00:2	./.	./.
chr6	17633061	rs2274136	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,12:30:12:1.00:2	0/1:0,7:30:7:1.00:2	./.	./.	0/1:0,5:28:5:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,6:29:6:1.00:2	0/1:2,11:29:13:0.846:2	0/1:0,9:31:9:1.00:2	0/1:0,9:29:9:1.00:2	0/1:7,4:30:11:0.364:2
chr6	17640216	rs2228376	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,19:30:39:0.487:2	./.	./.	./.	./.	./.	./.	./.
chr6	17665479	rs6906499	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,17:32:41:0.415:2	./.	./.	./.	./.	0/1:26,26:33:52:0.500:2	./.
chr6	17675246	rs2228375	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,11:33:29:0.379:2	./.	./.	./.	./.	0/1:31,31:33:62:0.500:2	./.
chr6	17688798	rs1065057	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,63:30:63:1.00:2	0/1:0,91:31:91:1.00:2	0/1:2,54:31:56:0.964:2	0/1:1,87:31:88:0.989:2	0/1:25,37:31:62:0.597:2	./.
chr6	17764530	rs9371018	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,12:32:41:0.293:2	0/1:23,16:32:39:0.410:2	./.	0/1:32,27:32:59:0.458:2	0/1:0,36:32:36:1.00:2	./.	./.	0/1:27,18:32:45:0.400:2	./.	./.	0/1:47,30:32:77:0.390:2
chr6	17764704	rs184937831	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,45:31:88:0.511:2	./.	./.	./.	./.
chr6	17764755	rs2296197	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:66,45:30:111:0.405:2	0/1:36,17:31:53:0.321:2	0/1:7,4:30:11:0.364:2	./.	./.	0/1:74,58:29:132:0.439:2	0/1:65,42:29:107:0.393:2	0/1:69,65:30:134:0.485:2	./.	./.	0/1:99,76:30:176:0.434:2
chr6	17764940	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:29:96:0.042:2	./.	./.	./.	./.	./.
chr6	17773790	rs17689215	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,17:30:43:0.395:2	./.
chr6	17775225	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,4:32:21:0.190:2	./.	./.	./.	./.	./.
chr6	17781450	rs942376	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:9,18:32:27:0.667:2	0/1:14,4:32:18:0.222:2	0/1:3,3:30:6:0.500:2	./.	./.	0/1:18,18:30:36:0.500:2	0/1:22,29:32:51:0.569:2	0/1:33,34:32:67:0.507:2	./.	./.	0/1:27,18:32:45:0.400:2
chr6	17781508	rs201386556	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,11:30:32:0.344:2	0/1:5,10:32:15:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,13:32:42:0.310:2
chr6	17794494	rs3734234	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,40:31:85:0.471:2	0/1:19,19:31:38:0.500:2	0/1:6,10:30:16:0.625:2	0/1:49,51:31:100:0.510:2	0/1:0,64:30:65:1.00:2	./.	./.	0/1:51,41:31:92:0.446:2	./.	./.	0/1:34,42:31:76:0.553:2
chr6	17799575	rs3734235	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,31:29:78:0.397:2	./.	./.	0/1:38,34:30:72:0.472:2	./.	0/1:1,71:30:72:0.986:2	0/1:34,30:30:64:0.469:2	./.
chr6	17828491	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:32:152:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	17831419	rs2277080	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,50:33:110:0.455:2	./.	0/1:51,51:32:102:0.500:2	0/1:46,27:33:73:0.370:2	./.	0/1:0,95:33:95:1.00:2	0/1:0,60:33:60:1.00:2	./.
chr6	17834198	rs4716189	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,15:30:44:0.341:2	0/1:19,22:29:41:0.537:2	0/1:0,3:30:3:1.00:2	0/1:46,17:27:63:0.270:2	./.	0/1:0,25:29:25:1.00:2	0/1:2,23:29:25:0.920:2	0/1:35,16:28:51:0.314:2	0/1:0,51:31:51:1.00:2	0/1:0,49:29:49:1.00:2	0/1:50,24:30:74:0.324:2
chr6	17834213	rs4716190	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,19:33:48:0.396:2	0/1:15,23:32:38:0.605:2	0/1:0,5:33:5:1.00:2	0/1:50,19:32:69:0.275:2	./.	0/1:0,28:32:28:1.00:2	0/1:1,26:33:27:0.963:2	0/1:40,18:33:58:0.310:2	0/1:3,46:33:49:0.939:2	0/1:0,54:32:54:1.00:2	0/1:53,27:33:80:0.338:2
chr6	18130918	rs1142345	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,56:32:101:0.554:2	./.	./.	./.	./.	./.	./.
chr6	18139214	rs2842934	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:32:95:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,10:31:10:1.00:2	0/1:60,35:29:95:0.368:2	0/1:0,37:30:37:1.00:2	0/1:0,99:30:99:1.00:2	0/1:4,36:31:40:0.900:2	0/1:0,96:31:96:1.00:2	0/1:0,100:32:100:1.00:2	0/1:81,37:31:118:0.314:2	0/1:77,73:31:150:0.487:2
chr6	18139228	rs1800460	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,14:32:40:0.350:2	./.	./.	./.	./.	./.	./.
chr6	18139254	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:33:186:0.022:2
chr6	18149222	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,6:34:131:0.046:2	./.	./.	./.
chr6	18149248	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,6:32:178:0.034:2	./.	./.	./.
chr6	18161563	rs4716224	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:35,23:32:58:0.397:2	0/1:19,14:33:33:0.424:2	0/1:9,3:33:12:0.250:2	./.	0/1:39,30:30:69:0.435:2	0/1:24,29:31:53:0.547:2	0/1:2,54:31:56:0.964:2	./.	0/1:1,55:31:56:0.982:2	0/1:22,25:31:47:0.532:2	./.
chr6	18188091	rs429158	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,35:30:59:0.593:2	0/1:32,14:30:46:0.304:2	./.	0/1:50,38:29:88:0.432:2	0/1:42,52:30:94:0.553:2	./.	./.	./.	./.	0/1:36,38:29:75:0.514:2	0/1:50,38:27:88:0.432:2
chr6	18197821	rs138145635	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,11:31:13:0.846:2	./.
chr6	18213988	rs6903583	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,39:32:91:0.429:2	0/1:56,70:32:126:0.556:2	./.	0/1:67,49:32:116:0.422:2	./.	./.	./.
chr6	18215303	rs214585	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:28:44:1.00:2	0/1:0,23:27:23:1.00:2	0/1:0,7:29:7:1.00:2	0/1:34,28:28:62:0.452:2	0/1:50,42:29:92:0.457:2	0/1:0,53:28:53:1.00:2	0/1:0,71:29:71:1.00:2	0/1:0,80:28:80:1.00:2	0/1:0,65:30:65:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,68:28:68:1.00:2
chr6	18218065	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,5:25:90:0.056:2	./.	0/1:118,7:30:125:0.056:2	./.	./.	./.
chr6	18237661	rs1013062	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,7:32:18:0.389:2	0/1:74,76:32:150:0.507:2	./.	./.	0/1:56,36:31:92:0.391:2	./.	0/1:99,75:33:174:0.431:2	./.	./.
chr6	18264210	rs11544757	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,13:32:31:0.419:2	./.	./.	0/1:11,14:33:25:0.560:2	./.	0/1:18,11:33:29:0.379:2	./.	./.
chr6	18399837	rs61748576	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,12:30:27:0.444:2	0/1:10,14:32:24:0.583:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	18572056	rs12197631	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.
chr6	20109842	rs2065649	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,37:30:83:0.446:2	./.
chr6	20128918	rs189780837	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,24:30:60:0.400:2	./.	./.
chr6	20483100	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,5:32:59:0.085:2	./.	./.	./.	./.	./.	./.	./.
chr6	20483110	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,5:29:57:0.088:2	./.	./.	./.	./.	./.	./.	./.
chr6	20483125	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,5:30:54:0.093:2	./.	./.	./.	./.	./.	./.	./.
chr6	21201472	rs148300738	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,20:32:38:0.526:2	./.	./.
chr6	21201493	rs9465994	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	0/1:0,20:33:20:1.00:2	0/1:20,18:33:38:0.474:2	./.	0/1:0,42:32:42:1.00:2	0/1:21,12:33:33:0.364:2	0/1:22,11:33:33:0.333:2	0/1:16,9:33:25:0.360:2
chr6	21597742	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,4:19:9:0.444:2
chr6	21597753	rs11346868	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:28:3:1.00:2	./.	./.
chr6	22287745	rs6239	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,29:31:64:0.453:2	./.	./.	./.
chr6	22570189	rs6922960	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,11:32:21:0.524:2	./.	0/1:19,7:32:26:0.269:2	0/1:0,3:29:3:1.00:2	0/1:16,8:31:24:0.333:2	./.	./.	./.
chr6	22570245	rs6900627	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,14:29:20:0.700:2	./.	0/1:20,9:30:29:0.310:2	0/1:0,7:30:7:1.00:2	0/1:18,12:30:30:0.400:2	./.	./.	./.
chr6	22571037	rs11751669	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,19:31:48:0.396:2	./.	0/1:26,21:30:47:0.447:2	0/1:1,41:30:42:0.976:2	0/1:45,21:27:66:0.318:2	./.	0/1:27,29:30:56:0.518:2	./.
chr6	22571234	rs45516092	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,8:30:23:0.348:2	./.
chr6	22571323	rs3734215	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,29:32:55:0.527:2	./.	0/1:47,17:31:64:0.266:2	0/1:0,36:32:36:1.00:2	0/1:20,41:33:61:0.672:2	./.	./.	./.
chr6	22571380	rs17413583	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,18:30:30:0.600:2	./.	./.	./.	0/1:31,12:30:43:0.279:2	./.	0/1:22,11:31:33:0.333:2	0/1:32,22:31:55:0.407:2
chr6	22571414	rs3734214	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,17:31:17:1.00:2	./.	0/1:10,5:29:15:0.333:2	0/1:0,8:31:8:1.00:2	0/1:0,24:30:24:1.00:2	./.	0/1:12,6:31:18:0.333:2	0/1:15,13:31:28:0.464:2
chr6	22571825	rs41271765	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,45:33:95:0.474:2	./.	./.	./.	./.	./.	0/1:48,37:32:85:0.435:2	0/1:58,50:33:109:0.463:2
chr6	24145896	rs11544636	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,33:31:97:0.340:2	0/1:36,23:31:59:0.390:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	24146454	rs16888718	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,55:31:134:0.410:2	./.	./.	./.	./.	./.	./.
chr6	24175021	rs9460973	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:31:14:0.500:2	./.	./.	./.	./.	0/1:70,62:31:133:0.470:2	./.	./.	./.
chr6	24205236	rs9467075	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:28:6:0.667:2	0/1:46,33:32:79:0.418:2	./.	0/1:39,37:31:76:0.487:2	./.	./.	./.	./.	0/1:43,33:31:76:0.434:2
chr6	24291203	rs2274305	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:41,28:31:69:0.406:2	0/1:25,20:29:45:0.444:2	0/1:0,2:29:2:1.00:2	./.	0/1:1,58:29:59:0.983:2	0/1:31,42:30:73:0.575:2	0/1:0,55:30:55:1.00:2	0/1:52,38:29:90:0.422:2	0/1:1,114:31:115:0.991:2	0/1:0,81:30:81:1.00:2	./.
chr6	24302046	rs33914824	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,67:30:129:0.519:2	./.	./.	./.	./.	./.	./.	./.
chr6	24357796	rs33943110	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,15:31:34:0.441:2	./.	./.	./.	./.	./.	./.	0/1:27,24:32:51:0.471:2
chr6	24358202	rs9379657	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,62:32:116:0.534:2	./.	0/1:52,58:32:110:0.527:2	./.	./.
chr6	24358483	rs1277349	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,183:33:183:1.00:2	0/1:0,116:32:116:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,175:32:177:1.00:2	0/1:0,124:31:124:1.00:2	0/1:0,185:32:185:1.00:2	0/1:0,127:32:127:1.00:2	0/1:0,187:32:187:1.00:2	0/1:0,186:33:186:1.00:2	0/1:0,169:32:169:1.00:2	0/1:0,167:32:167:1.00:2
chr6	24403377	rs2295651	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	./.	./.	./.	0/1:23,37:30:60:0.617:2	./.	./.	./.
chr6	24403455	rs11695	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:30:6:0.667:2	0/1:1,3:31:4:0.750:2	0/1:0,4:32:4:1.00:2	./.	./.	./.	./.	./.
chr6	24412530	rs61733147	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:31:10:0.600:2	./.	./.	./.	./.	0/1:56,69:31:125:0.552:2	./.	./.	./.
chr6	24418348	rs2793422	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,40:32:100:0.400:2	./.	./.	0/1:77,69:32:146:0.473:2	0/1:82,67:31:149:0.450:2	0/1:83,46:32:129:0.357:2	./.	./.
chr6	24418786	rs79527965	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,5:32:13:0.385:2	0/1:93,50:33:143:0.350:2	0/1:55,47:33:102:0.461:2	0/1:85,46:32:131:0.351:2	./.	./.	./.	0/1:50,48:33:98:0.490:2	0/1:104,69:34:173:0.399:2
chr6	24433483	rs9461006	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,50:29:114:0.439:2	0/1:36,47:28:83:0.566:2	0/1:68,47:29:115:0.409:2	./.	./.	./.	0/1:43,62:28:105:0.590:2	0/1:71,45:29:116:0.388:2
chr6	24437408	rs61733145	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,53:32:85:0.624:2	./.
chr6	24437445	rs1772256	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:30:90:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,101:30:101:1.00:2	0/1:1,117:30:118:0.992:2	0/1:0,103:29:103:1.00:2	0/1:0,124:29:124:1.00:2	0/1:1,115:30:116:0.991:2	0/1:1,109:31:110:0.991:2	0/1:0,82:30:82:1.00:2	0/1:0,102:31:102:1.00:2
chr6	24437458	rs1042303	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,98:30:99:0.990:2	0/1:81,44:30:125:0.352:2	./.	0/1:69,58:29:127:0.457:2	./.	0/1:66,39:30:105:0.371:2	0/1:48,32:29:80:0.400:2	./.
chr6	24445829	rs9358767	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,40:31:110:0.364:2	./.	./.	./.	./.
chr6	24454396	rs61748830	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,24:31:38:0.632:2
chr6	24463020	rs17300770	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,32:31:72:0.444:2	./.	0/1:30,34:31:64:0.531:2	./.	0/1:41,30:32:71:0.423:2	./.	0/1:26,36:32:62:0.581:2	0/1:1,52:33:53:0.981:2
chr6	24480113	rs61748579	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,13:31:31:0.419:2	0/1:17,14:33:31:0.452:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	24489652	rs1126617	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,4:30:20:0.200:2	./.	0/1:1,72:31:73:0.986:2	0/1:42,48:31:90:0.533:2	./.	0/1:74,39:31:113:0.345:2	0/1:69,47:32:116:0.405:2	./.	0/1:43,43:33:86:0.500:2
chr6	24489691	rs2235501	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:42,36:32:78:0.462:2	0/1:11,26:32:37:0.703:2	0/1:12,9:31:21:0.429:2	./.	./.	./.	./.	./.	./.	./.	0/1:48,36:32:84:0.429:2
chr6	24489733	rs116789689	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,24:33:67:0.358:2	0/1:7,19:32:26:0.731:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	24489741	rs2076316	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:43,20:32:63:0.317:2	0/1:5,22:32:27:0.815:2	0/1:8,5:33:13:0.385:2	./.	0/1:1,82:32:83:0.988:2	0/1:48,34:33:82:0.415:2	./.	0/1:55,69:33:124:0.556:2	0/1:57,53:33:110:0.482:2	./.	0/1:36,31:32:67:0.463:2
chr6	24503590	rs2760118	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:9,11:31:20:0.550:2	0/1:13,5:31:18:0.278:2	0/1:0,3:31:3:1.00:2	./.	0/1:0,9:30:9:1.00:2	0/1:9,6:32:15:0.400:2	./.	0/1:6,15:30:21:0.714:2	0/1:13,11:29:24:0.458:2	./.	0/1:15,10:30:25:0.400:2
chr6	24503597	rs3765310	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:14,11:32:25:0.440:2
chr6	24532412	rs12211574	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,30:31:86:0.349:2	0/1:29,22:31:51:0.431:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	24551664	rs807534	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:114,82:32:196:0.418:2	0/1:108,86:32:194:0.443:2	./.	0/1:107,89:33:196:0.454:2	0/1:101,87:33:188:0.463:2	./.	./.
chr6	24551729	rs807535	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,66:32:126:0.524:2	0/1:101,95:32:196:0.485:2	./.	0/1:83,106:33:189:0.561:2	0/1:99,95:34:194:0.490:2	./.	./.
chr6	24559281	rs807541	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,22:29:49:0.449:2	0/1:36,19:28:55:0.345:2	./.	0/1:39,31:29:70:0.443:2	0/1:30,23:31:53:0.434:2	./.	./.
chr6	24588884	rs4504469	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,53:30:114:0.469:2	0/1:69,34:31:103:0.330:2	0/1:64,45:31:109:0.413:2	0/1:59,44:31:103:0.427:2	./.	0/1:1,112:32:113:0.991:2	0/1:2,66:31:68:0.971:2	0/1:0,91:32:91:1.00:2
chr6	24596433	rs73727343	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,9:29:17:0.529:2	./.	./.	./.
chr6	24596478	rs4576240	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,6:32:15:0.400:2	0/1:6,5:33:11:0.455:2	0/1:0,3:33:3:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,12:32:12:1.00:2	0/1:5,6:32:11:0.545:2	0/1:1,24:33:25:0.960:2	0/1:10,9:31:19:0.474:2	0/1:0,18:31:18:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,15:32:15:1.00:2
chr6	24596656	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:29:66:0.061:2	./.	./.	./.	./.
chr6	24653273	rs2294689	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	24653283	rs11559067	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,27:31:46:0.587:2	./.	./.	./.	./.
chr6	24653376	rs1129644	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,28:32:28:1.00:2	0/1:0,22:31:22:1.00:2	./.	0/1:37,13:32:50:0.260:2	0/1:22,20:31:42:0.476:2	0/1:29,17:31:46:0.370:2	0/1:33,18:32:51:0.353:2	0/1:0,62:31:62:1.00:2	0/1:21,17:32:38:0.447:2	0/1:0,46:32:46:1.00:2	0/1:31,26:32:57:0.456:2
chr6	24687888	rs76228045	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,49:32:130:0.380:2	./.	./.	./.
chr6	24698215	rs7765904	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:45,35:31:80:0.438:2	0/1:21,23:31:44:0.523:2	./.	0/1:57,27:31:84:0.321:2	0/1:49,40:31:89:0.449:2	./.	./.	0/1:51,52:31:103:0.505:2	./.	0/1:0,81:31:81:1.00:2	./.
chr6	24706441	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,7:20:94:0.074:2
chr6	24718852	rs111465377	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,26:33:65:0.400:2	0/1:23,25:33:48:0.521:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	24720124	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,33:31:89:0.371:2	./.	./.	./.
chr6	24780892	rs1923185	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,27:32:55:0.491:2	./.	./.	./.
chr6	24780944	rs2307300	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,83:32:83:1.00:2	./.
chr6	24818785	rs9358802	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:41,3:32:44:0.068:2	./.	0/1:46,37:32:83:0.446:2	./.	0/1:47,44:31:91:0.484:2	./.	0/1:0,88:32:88:1.00:2	./.	./.	0/1:71,61:32:132:0.462:2
chr6	24825511	rs9358804	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:29:64:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,8:31:8:1.00:2	0/1:39,59:29:98:0.602:2	0/1:55,59:29:114:0.518:2	0/1:2,122:29:124:0.984:2	0/1:0,113:29:113:1.00:2	0/1:0,118:28:118:1.00:2	0/1:0,102:30:102:1.00:2	0/1:1,77:29:78:0.987:2	0/1:0,100:29:100:1.00:2
chr6	24828490	rs9461073	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,17:32:32:0.531:2	./.	0/1:17,11:33:28:0.393:2	./.	./.
chr6	24869300	rs2817747	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:30:14:0.286:2	./.	./.	0/1:0,160:29:160:1.00:2	./.	0/1:4,140:29:144:0.972:2	0/1:90,95:30:186:0.514:2	0/1:1,133:29:134:0.993:2	0/1:98,92:29:190:0.484:2
chr6	25084718	rs303006	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,54:30:109:0.500:2	0/1:49,30:29:79:0.380:2	0/1:13,4:31:17:0.235:2	0/1:0,136:30:136:1.00:2	0/1:58,64:30:122:0.525:2	0/1:0,119:30:119:1.00:2	0/1:0,125:30:125:1.00:2	0/1:1,144:30:145:0.993:2	0/1:82,63:30:145:0.434:2	0/1:0,124:29:124:1.00:2	0/1:0,119:29:119:1.00:2
chr6	25097298	rs1128827	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,21:30:42:0.500:2	./.	./.	./.	./.	./.	./.
chr6	25106663	rs7774557	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,26:32:51:0.510:2	./.	./.	./.	./.	./.	./.
chr6	25108923	rs1128826	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,10:31:15:0.667:2	./.	./.	./.	./.	./.	./.
chr6	25109774	rs1046142	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,24:31:54:0.444:2	./.	./.	./.	./.	./.	./.
chr6	25110234	rs78066062	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,35:32:78:0.449:2	./.	./.	./.	./.	./.	./.
chr6	25113931	rs45568536	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,70:32:143:0.490:2	./.	./.	./.	./.	./.	./.	./.
chr6	25115296	rs2273671	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,10:30:19:0.526:2	./.	0/1:17,7:32:24:0.292:2	0/1:25,15:34:40:0.375:2	0/1:25,4:31:29:0.138:2	./.
chr6	25420344	rs913455	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,83:32:83:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,105:33:105:1.00:2	0/1:72,69:32:141:0.489:2	0/1:0,117:32:117:1.00:2	0/1:2,116:32:118:0.983:2	0/1:0,130:32:130:1.00:2	0/1:0,117:33:117:1.00:2	0/1:56,52:33:108:0.481:2	0/1:0,109:33:109:1.00:2
chr6	25420350	rs41271807	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,75:32:145:0.517:2	./.	./.	0/1:56,55:32:111:0.495:2
chr6	25426768	rs9358856	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:72,72:32:144:0.500:2	0/1:53,42:32:95:0.442:2	./.	0/1:86,59:31:145:0.407:2	./.	0/1:89,88:31:177:0.497:2	0/1:4,155:32:159:0.975:2	./.	0/1:95,92:33:187:0.492:2	./.	./.
chr6	25435758	rs9467515	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,51:29:51:1.00:2	0/1:0,31:28:31:1.00:2	./.	0/1:32,30:28:62:0.484:2	0/1:36,46:29:82:0.561:2	0/1:31,14:29:45:0.311:2	0/1:0,98:30:98:1.00:2	./.	0/1:39,26:30:65:0.400:2	./.	0/1:37,29:28:66:0.439:2
chr6	25472737	rs41271815	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,30:30:59:0.508:2	0/1:19,30:32:49:0.612:2	./.	./.
chr6	25551186	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:34:177:0.023:2	./.	./.
chr6	25600968	rs10456324	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,78:32:79:0.987:2	0/1:1,65:32:66:0.985:2	0/1:9,12:30:21:0.571:2	0/1:1,131:31:132:0.992:2	./.	0/1:0,130:31:130:1.00:2	0/1:74,58:32:132:0.439:2	0/1:82,75:32:157:0.478:2	0/1:71,64:32:135:0.474:2	0/1:0,103:31:103:1.00:2	0/1:63,70:32:133:0.526:2
chr6	25605091	rs1012899	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:33:30:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,32:32:32:1.00:2	0/1:10,9:31:20:0.474:2	0/1:0,19:32:19:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,27:33:27:1.00:2	0/1:24,8:33:32:0.250:2
chr6	25669783	rs149172182	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,24:30:67:0.358:2	./.	./.	./.	./.
chr6	25689456	rs6930176	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,6:31:14:0.429:2	./.	./.	./.	./.	./.	./.
chr6	25691362	rs17492659	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,74:31:144:0.514:2	./.	./.	0/1:66,25:31:91:0.275:2	./.	./.	./.	0/1:90,66:32:156:0.423:2
chr6	25726343	rs6940348	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,33:32:34:0.971:2	0/1:0,14:31:14:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,41:32:41:1.00:2	0/1:26,16:32:42:0.381:2	0/1:0,42:32:42:1.00:2
chr6	25726510	rs144559425	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:32:87:0.046:2	./.	./.
chr6	25726621	rs9467583	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:12,22:33:34:0.647:2	0/1:10,10:32:20:0.500:2	0/1:0,8:31:8:1.00:2	./.	0/1:25,16:30:41:0.390:2	0/1:23,32:31:55:0.582:2	0/1:31,37:31:68:0.544:2	./.	./.	./.	0/1:22,24:31:46:0.522:2
chr6	25726675	rs9358871	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,17:30:44:0.386:2	./.	0/1:31,18:31:49:0.367:2	./.	0/1:26,17:31:43:0.395:2	./.	0/1:23,29:33:52:0.558:2	./.
chr6	25726774	rs4711095	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,40:30:94:0.426:2	./.	0/1:51,36:29:87:0.414:2	./.	0/1:64,46:30:110:0.418:2	./.	0/1:37,38:29:75:0.507:2	./.
chr6	25727054	rs4711096	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,15:33:26:0.577:2	./.	0/1:6,3:32:9:0.333:2	./.	0/1:5,9:32:14:0.643:2	./.	0/1:6,6:31:12:0.500:2	./.
chr6	25727057	rs4712959	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,15:30:27:0.556:2	./.	0/1:7,3:30:10:0.300:2	./.	0/1:6,9:31:15:0.600:2	./.	0/1:6,6:32:12:0.500:2	./.
chr6	25727265	rs4712960	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,26:32:70:0.371:2	./.	0/1:36,25:31:61:0.410:2	./.	0/1:44,26:32:71:0.371:2	./.	0/1:34,11:32:45:0.244:2	./.
chr6	25727334	rs4712961	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,42:33:114:0.368:2	./.	0/1:66,50:32:116:0.431:2	./.	0/1:74,83:32:157:0.529:2	./.	0/1:57,35:32:92:0.380:2	./.
chr6	25727517	rs9358872	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,16:31:33:0.485:2	./.	0/1:27,11:30:38:0.289:2	./.	0/1:21,20:32:41:0.488:2	./.	0/1:10,11:31:21:0.524:2	./.
chr6	25727527	rs17320558	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,11:31:26:0.423:2	./.	./.	0/1:19,20:31:39:0.513:2	./.	./.	./.	0/1:15,7:28:22:0.318:2
chr6	25769349	rs1892251	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:33:63:1.00:2	0/1:1,36:32:37:0.973:2	0/1:0,8:32:8:1.00:2	0/1:0,64:32:64:1.00:2	0/1:19,22:32:41:0.537:2	0/1:0,63:32:63:1.00:2	0/1:33,41:32:74:0.554:2	0/1:0,72:32:72:1.00:2	0/1:0,82:33:82:1.00:2	0/1:46,24:33:70:0.343:2	0/1:0,69:33:69:1.00:2
chr6	25773809	rs2275906	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:84,76:32:161:0.475:2	0/1:57,45:33:102:0.441:2	0/1:0,11:32:11:1.00:2	./.	./.	0/1:89,82:33:171:0.480:2	./.	./.	./.	./.	0/1:99,81:33:180:0.450:2
chr6	25776949	rs11754288	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:1,130:30:132:0.992:2	0/1:0,105:30:105:1.00:2	0/1:0,24:30:24:1.00:2	./.	./.	0/1:75,53:29:128:0.414:2	./.	0/1:81,71:29:152:0.467:2	0/1:1,128:30:131:0.992:2	./.	0/1:77,78:29:156:0.503:2
chr6	25779392	rs9358890	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,78:32:173:0.451:2	./.	./.	./.
chr6	25813150	rs1165196	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,61:32:61:1.00:2	0/1:0,55:31:55:1.00:2	0/1:41,40:31:81:0.494:2	0/1:0,60:32:60:1.00:2	0/1:63,51:31:114:0.447:2	./.	0/1:0,53:32:53:1.00:2	0/1:40,52:32:92:0.565:2
chr6	25820124	rs6933573	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,12:30:32:0.375:2	./.
chr6	25849620	rs942379	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,46:29:46:1.00:2	0/1:0,20:28:20:1.00:2	0/1:22,12:28:34:0.353:2	0/1:0,27:29:27:1.00:2	0/1:18,27:29:45:0.600:2	./.	0/1:1,30:29:31:0.968:2	0/1:32,24:30:56:0.429:2
chr6	25850845	rs56027330	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,30:32:46:0.652:2	./.	./.	0/1:26,20:32:46:0.435:2	./.	./.	./.	0/1:30,38:32:68:0.559:2
chr6	25862466	rs1165165	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,13:29:33:0.394:2	./.	0/1:22,16:31:38:0.421:2	./.	./.	./.	0/1:38,31:31:69:0.449:2
chr6	25914801	rs2071299	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,47:31:112:0.420:2	./.	0/1:41,30:31:71:0.423:2	0/1:44,38:31:82:0.463:2	0/1:52,40:30:92:0.435:2	./.	0/1:35,32:31:67:0.478:2	0/1:40,38:32:79:0.487:2
chr6	25914853	rs34525648	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,33:32:67:0.493:2	./.	0/1:28,27:32:55:0.491:2	./.	./.	0/1:44,35:32:79:0.443:2	./.
chr6	25916979	rs1865760	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,33:30:72:0.458:2	./.	0/1:49,36:29:85:0.424:2	0/1:41,47:31:88:0.534:2	0/1:47,49:31:96:0.510:2	./.	0/1:35,37:31:72:0.514:2	0/1:46,53:31:99:0.535:2
chr6	25917035	rs140811656	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,34:33:59:0.576:2	./.	./.	./.	./.	./.	./.
chr6	25917225	rs142363960	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,65:32:144:0.451:2	./.	./.	./.	./.	./.	./.
chr6	25921539	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,5:27:103:0.049:2	./.	./.	./.	./.	./.	./.	./.
chr6	25925987	rs3734523	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,72:31:145:0.497:2	./.	0/1:63,50:31:113:0.442:2	./.	./.	0/1:47,28:31:75:0.373:2	./.
chr6	25967030	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:31:82:0.049:2	./.	./.	./.	./.	./.
chr6	25967068	rs2009610	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,54:30:106:0.509:2	./.	./.	./.	0/1:37,37:32:74:0.500:2	./.
chr6	25967144	rs61737163	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,29:32:57:0.509:2	./.
chr6	25969602	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,37:31:71:0.521:2	./.	./.
chr6	25972229	rs148853399	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,4:28:39:0.103:2	./.	./.	./.	./.	./.	./.
chr6	25983777	rs17528178	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,14:32:45:0.311:2	./.	0/1:27,26:32:53:0.491:2	./.	./.	./.	./.
chr6	26017431	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:174,4:32:178:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr6	26017542	rs16891235	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,47:32:99:0.475:2	./.	0/1:57,48:33:105:0.457:2	./.	./.	./.	./.
chr6	26017675	rs62000984	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,14:30:22:0.636:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	26027260	rs367858628	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,6:31:112:0.054:2	./.
chr6	26027433	rs3752419	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,44:30:90:0.489:2	./.	0/1:1,59:31:60:0.983:2	0/1:51,38:29:89:0.427:2	0/1:63,57:30:120:0.475:2	./.	0/1:34,23:29:57:0.404:2	0/1:27,25:31:52:0.481:2
chr6	26031962	rs34966100	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,33:30:80:0.413:2	./.	./.	./.	./.	./.	./.
chr6	26033506	rs2230655	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,6:32:15:0.400:2	0/1:53,41:31:94:0.436:2	0/1:4,74:30:78:0.949:2	0/1:0,94:31:94:1.00:2	0/1:0,94:31:94:1.00:2	0/1:82,45:30:127:0.354:2	./.	0/1:0,98:31:98:1.00:2	0/1:44,39:31:83:0.470:2
chr6	26033641	rs2230654	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:32:5:0.800:2	./.	./.	./.	./.	./.	./.	0/1:16,26:31:42:0.619:2	./.
chr6	26045737	rs3752418	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,23:29:52:0.442:2	./.	0/1:35,26:29:61:0.426:2	./.	./.	./.
chr6	26045905	rs3752417	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,44:29:97:0.454:2	./.	0/1:53,25:28:78:0.321:2	./.	./.	./.	./.
chr6	26045929	rs3752416	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,31:29:64:0.484:2	0/1:47,38:29:85:0.447:2	0/1:0,73:30:73:1.00:2	0/1:1,75:29:76:0.987:2	0/1:37,45:28:82:0.549:2	./.	0/1:0,54:30:55:1.00:2	0/1:43,30:31:73:0.411:2
chr6	26056072	rs8384	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,54:31:89:0.607:2	./.	./.	./.	0/1:35,42:30:77:0.545:2	./.
chr6	26056549	rs10425	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,24:29:56:0.429:2	0/1:0,24:30:24:1.00:2	0/1:0,31:28:31:1.00:2	0/1:1,44:30:45:0.978:2	0/1:22,28:29:50:0.560:2	./.	0/1:0,44:29:45:1.00:2	0/1:31,33:27:64:0.516:2
chr6	26056604	rs2230653	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,19:30:37:0.514:2	./.	./.	./.
chr6	26091179	rs1799945	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,68:33:157:0.433:2	./.	./.	0/1:110,76:33:186:0.409:2	./.	./.	./.	0/1:85,104:33:189:0.550:2
chr6	26091185	rs1800730	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,108:31:191:0.565:2	./.	./.	./.	./.	./.
chr6	26091808	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:165,5:30:170:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr6	26093062	rs202068193	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:34:154:0.026:2
chr6	26104280	rs2229768	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,25:32:71:0.352:2	./.	./.	./.	0/1:0,54:32:54:1.00:2	./.
chr6	26104448	rs198852	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:2,54:33:56:0.964:2	0/1:0,36:32:36:1.00:2	./.	0/1:49,44:33:93:0.473:2	./.	./.	./.	0/1:42,34:32:76:0.447:2	0/1:1,81:34:82:0.988:2	./.	0/1:33,45:33:78:0.577:2
chr6	26107790	rs198845	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,112:32:115:0.974:2	0/1:0,63:32:63:1.00:2	0/1:17,13:31:30:0.433:2	0/1:74,84:31:158:0.532:2	./.	./.	./.	0/1:111,75:31:186:0.403:2	0/1:1,160:32:161:0.994:2	./.	0/1:112,77:32:189:0.407:2
chr6	26108168	rs2051542	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,77:32:126:0.611:2	./.	0/1:85,83:32:168:0.494:2	./.	./.	./.
chr6	26108282	rs198844	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:31:54:1.00:2	0/1:0,26:33:26:1.00:2	0/1:5,5:33:10:0.500:2	0/1:22,26:31:48:0.542:2	./.	0/1:26,22:32:48:0.458:2	./.	0/1:35,34:32:69:0.493:2	0/1:0,56:33:56:1.00:2	0/1:2,60:32:62:0.968:2	0/1:41,41:31:82:0.500:2
chr6	26124573	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:30:75:0.053:2	./.	./.	./.
chr6	26124634	rs4645	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:2,93:29:95:0.979:2	0/1:1,56:29:57:0.982:2	0/1:8,12:30:20:0.600:2	./.	./.	./.	./.	0/1:51,50:28:101:0.495:2	0/1:48,48:31:96:0.500:2	./.	0/1:20,39:30:59:0.661:2
chr6	26158415	rs115064134	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,3:34:49:0.061:2	0/1:43,4:32:47:0.085:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	26184041	rs16891375	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,39:31:83:0.470:2	./.	./.	0/1:39,36:31:75:0.480:2	./.	./.	./.	0/1:49,33:31:82:0.402:2
chr6	26184102	rs7766641	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:45,34:32:79:0.430:2	0/1:17,24:32:41:0.585:2	./.	0/1:67,53:32:120:0.442:2	./.	0/1:50,62:31:112:0.554:2	0/1:103,5:33:108:0.046:2	0/1:84,58:31:142:0.408:2	0/1:57,58:33:115:0.504:2	0/1:50,54:32:104:0.519:2	./.
chr6	26184230	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:31:48:0.083:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	26184269	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:31:36:0.111:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	26184284	rs201769089	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,4:32:37:0.108:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	26189305	rs113589835	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,7:32:25:0.280:2
chr6	26197493	rs41266801	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:29:7:0.429:2	0/1:85,50:30:135:0.370:2	0/1:107,64:30:171:0.374:2	./.	0/1:96,86:30:182:0.473:2	./.	0/1:53,60:31:113:0.531:2	./.	0/1:56,51:31:107:0.477:2
chr6	26199222	rs113561314	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,71:32:152:0.467:2	./.	./.	0/1:69,63:31:133:0.477:2	./.	./.	./.	0/1:81,76:31:157:0.484:2
chr6	26199454	rs41266803	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,8:30:16:0.500:2	./.	0/1:35,22:31:57:0.386:2	./.	./.	./.	0/1:37,42:31:79:0.532:2	./.	./.
chr6	26199822	rs41266807	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,10:32:21:0.476:2	0/1:76,66:34:142:0.465:2	0/1:61,80:33:141:0.567:2	./.	0/1:69,90:32:159:0.566:2	./.	0/1:81,82:34:163:0.503:2	./.	0/1:80,73:33:153:0.477:2
chr6	26199903	rs34961555	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,42:32:89:0.472:2	./.	0/1:43,35:32:78:0.449:2	0/1:53,44:32:97:0.454:2	./.	./.	./.
chr6	26200083	rs1059486	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,13:30:31:0.419:2	0/1:9,10:31:19:0.526:2	./.	0/1:2,58:32:60:0.967:2	0/1:13,11:32:24:0.458:2	0/1:23,35:33:58:0.603:2	0/1:16,10:30:26:0.385:2	0/1:16,23:32:39:0.590:2	0/1:0,34:32:35:1.00:2	0/1:0,36:31:36:1.00:2	0/1:25,15:31:40:0.375:2
chr6	26200113	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,9:32:35:0.257:2	0/1:10,5:30:15:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	26205052	rs61910695	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:32:14:0.286:2	./.	0/1:73,55:31:128:0.430:2	./.	./.	./.	0/1:73,73:32:147:0.500:2	./.	./.
chr6	26205059	rs75682828	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,6:32:17:0.353:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	26216584	rs16891427	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:29:13:0.462:2	./.	0/1:49,39:29:88:0.443:2	./.	./.	./.	0/1:56,39:30:95:0.411:2	./.	./.
chr6	26216656	rs41266811	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,85:33:183:0.464:2	./.	./.	0/1:90,91:33:181:0.503:2	./.	./.	./.	0/1:89,69:32:158:0.437:2
chr6	26234883	rs2050950	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,5:32:11:0.455:2	0/1:53,42:32:96:0.442:2	0/1:59,35:31:94:0.372:2	./.	0/1:45,41:32:86:0.477:2	./.	0/1:46,50:34:96:0.521:2	./.	0/1:67,34:31:101:0.337:2
chr6	26234952	rs2050948	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,4:28:13:0.308:2	0/1:62,50:29:112:0.446:2	0/1:51,27:30:78:0.346:2	./.	0/1:46,35:28:81:0.432:2	./.	0/1:65,42:30:107:0.393:2	./.	0/1:56,48:27:104:0.462:2
chr6	26235010	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,7:31:119:0.059:2	./.	./.	./.	./.
chr6	26240752	rs16891477	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,44:33:105:0.419:2	./.	./.
chr6	26247198	rs41266821	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,11:32:29:0.379:2	0/1:14,17:32:31:0.548:2	./.	0/1:19,22:32:41:0.537:2	./.	./.	./.	0/1:25,33:33:58:0.569:2
chr6	26252085	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,4:31:50:0.080:2	./.	./.	0/1:131,4:32:135:0.030:2	./.	./.	./.	./.	./.	./.
chr6	26252124	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:27:48:0.083:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	26252139	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:33:48:0.083:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	26273212	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,6:32:154:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr6	26273224	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:168,6:29:174:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr6	26273269	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:187,6:30:193:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr6	26273458	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,11:31:58:0.190:2	./.
chr6	26285503	rs41266829	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,53:31:137:0.387:2	./.	./.	0/1:87,86:32:173:0.497:2	./.	./.	./.	0/1:78,50:31:128:0.391:2
chr6	26285560	rs2393592	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,63:30:107:0.589:2	0/1:33,27:28:60:0.450:2	0/1:14,4:27:18:0.222:2	0/1:0,126:30:126:1.00:2	0/1:87,54:30:141:0.383:2	0/1:76,69:31:145:0.476:2	0/1:81,60:31:141:0.426:2	0/1:44,76:30:120:0.633:2	0/1:68,68:30:137:0.500:2	0/1:58,68:31:127:0.540:2	0/1:53,47:29:100:0.470:2
chr6	26285683	rs2393593	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,22:33:52:0.423:2	0/1:13,14:32:27:0.519:2	0/1:1,8:33:9:0.889:2	0/1:0,62:32:62:1.00:2	0/1:36,26:32:62:0.419:2	0/1:36,29:33:65:0.446:2	0/1:63,35:33:98:0.357:2	0/1:50,48:32:98:0.490:2	0/1:49,29:33:78:0.372:2	0/1:0,64:32:64:1.00:2	0/1:30,30:32:60:0.500:2
chr6	26368938	rs76764747	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:152,43:33:195:0.221:2	./.	0/1:162,37:32:199:0.186:2	0/1:147,46:32:193:0.238:2	./.	0/1:141,54:32:195:0.277:2	0/1:145,49:32:194:0.253:2
chr6	26368983	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,7:32:94:0.074:2	./.	./.	0/1:181,15:30:196:0.077:2	./.	./.	0/1:181,13:33:194:0.067:2	./.	./.
chr6	26369080	rs41290371	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,55:33:193:0.285:2	0/1:129,37:32:166:0.223:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,43:33:195:0.221:2
chr6	26370572	rs34878490	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,17:32:46:0.370:2	0/1:29,15:31:44:0.341:2	./.	./.	./.
chr6	26370605	rs9379860	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:33:5:0.800:2	./.	0/1:0,49:31:49:1.00:2	0/1:0,76:31:76:1.00:2	0/1:34,20:31:54:0.370:2	0/1:38,29:31:67:0.433:2	0/1:0,66:32:66:1.00:2	0/1:28,36:32:64:0.563:2	0/1:37,33:32:70:0.471:2
chr6	26370657	rs9358936	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,26:29:82:0.317:2	0/1:62,40:28:102:0.392:2	./.	./.	./.
chr6	26370659	rs9393711	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,26:32:85:0.306:2	0/1:62,40:31:103:0.392:2	./.	./.	./.
chr6	26370660	rs12205731	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,63:30:112:0.568:2	./.	./.	0/1:0,104:31:104:1.00:2	./.	./.
chr6	26370707	rs9379862	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,43:29:91:0.473:2	./.	0/1:65,62:29:127:0.488:2	0/1:68,51:29:119:0.429:2	./.	0/1:75,67:29:142:0.472:2	./.
chr6	26373150	rs12174631	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,29:33:60:0.483:2	0/1:36,35:31:71:0.493:2	./.	./.	./.
chr6	26373495	rs377114514	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,4:21:11:0.364:2	./.	./.	./.	./.	./.	./.
chr6	26373507	rs13216828	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,6:31:16:0.375:2	0/1:12,12:31:24:0.500:2	./.	./.	./.
chr6	26373678	rs9393713	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,23:30:49:0.469:2	0/1:21,26:30:47:0.553:2	./.	./.	./.
chr6	26374549	rs11758089	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,77:32:164:0.470:2	./.	0/1:99,92:32:191:0.482:2	0/1:88,72:32:160:0.450:2	./.	./.	./.	0/1:92,81:33:173:0.468:2
chr6	26384060	rs73736234	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,35:30:90:0.389:2	./.
chr6	26384106	rs115247877	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,55:27:123:0.447:2	./.	./.	./.	./.	./.	./.
chr6	26385263	rs57038103	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,42:32:83:0.506:2	./.
chr6	26388405	rs62617839	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,56:32:101:0.554:2	./.	./.	./.	./.	./.	0/1:34,32:32:67:0.485:2
chr6	26388450	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:31:85:0.047:2	./.
chr6	26392629	rs142803339	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,25:30:67:0.373:2	./.	./.	./.	./.	./.	./.
chr6	26392917	rs114760306	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,35:31:80:0.438:2	./.
chr6	26392963	rs200888343	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,10:28:189:0.053:2	./.	./.	./.
chr6	26393021	rs1614887	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,41:31:41:1.00:2	0/1:93,85:31:178:0.478:2	0/1:113,77:30:190:0.405:2	0/1:10,173:31:183:0.945:2	0/1:16,166:32:183:0.912:2	0/1:105,75:32:180:0.417:2	0/1:3,168:33:172:0.982:2	0/1:103,79:32:187:0.434:2	0/1:3,153:32:156:0.981:2
chr6	26393161	rs73736249	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,17:33:38:0.447:2	./.
chr6	26405816	rs55676749	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,17:33:31:0.548:2	./.	0/1:99,97:32:196:0.495:2	./.	./.	./.	./.	./.	./.
chr6	26405835	rs56161420	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,72:32:124:0.581:2	0/1:31,34:32:65:0.523:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,92:32:176:0.523:2
chr6	26406248	rs149895116	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:31:195:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	26406255	rs3857550	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:159,26:32:185:0.141:2	0/1:86,16:31:102:0.157:2	0/1:4,8:31:12:0.667:2	./.	0/1:183,17:31:200:0.085:2	0/1:18,45:30:63:0.714:2	0/1:185,12:32:197:0.061:2	0/1:178,17:31:195:0.087:2	0/1:8,52:32:60:0.867:2	0/1:177,16:32:193:0.083:2	0/1:177,17:31:194:0.088:2
chr6	26406282	rs367894457	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:190,7:31:197:0.036:2	./.	./.	0/1:184,12:31:196:0.061:2	./.	./.	0/1:183,8:32:192:0.042:2
chr6	26406327	rs138258145	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,8:31:47:0.170:2	./.	./.	0/1:143,54:31:197:0.274:2	./.	./.	0/1:149,50:33:199:0.251:2	./.	./.
chr6	26406424	rs142058993	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,39:33:181:0.215:2	0/1:123,31:31:154:0.201:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,42:33:190:0.221:2
chr6	26409890	rs41266839	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,8:31:23:0.348:2	0/1:16,18:33:35:0.529:2	./.	./.	./.
chr6	26410227	rs7770214	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,58:32:128:0.453:2	0/1:35,30:32:65:0.462:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,96:32:182:0.527:2
chr6	26411394	rs6921148	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,8:28:9:0.889:2	./.	0/1:67,33:28:100:0.330:2	./.	./.	./.	./.	./.	./.
chr6	26413810	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,5:31:171:0.029:2	./.	./.	./.	./.
chr6	26422353	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:31:108:0.037:2	./.	./.
chr6	26422354	rs55775018	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,19:30:54:0.352:2	0/1:31,9:32:40:0.225:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,12:31:45:0.267:2
chr6	26422389	rs113134648	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,5:32:38:0.132:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	26423303	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:31:166:0.024:2	./.	./.	./.	./.	./.
chr6	26423317	rs7745238	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,59:31:149:0.396:2	0/1:43,35:31:78:0.449:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,78:31:162:0.481:2
chr6	26426487	rs10946829	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,13:31:34:0.382:2	0/1:11,8:32:19:0.421:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,20:32:44:0.455:2
chr6	26430981	rs2893848	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,8:33:14:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,10:33:18:0.556:2
chr6	26431285	rs12207181	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,8:29:16:0.500:2	./.	./.	0/1:0,104:31:104:1.00:2	./.	./.	0/1:0,109:32:109:1.00:2	./.	./.
chr6	26431340	rs45499696	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,48:30:97:0.500:2	0/1:24,31:29:55:0.564:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,57:28:103:0.553:2
chr6	26443853	rs56036950	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,88:30:180:0.489:2	0/1:91,80:32:171:0.468:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,86:30:192:0.450:2
chr6	26444330	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,12:31:198:0.061:2	0/1:189,5:30:194:0.026:2	./.	0/1:187,6:32:193:0.031:2	0/1:184,5:31:189:0.026:2
chr6	26444375	rs147078433	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,31:31:82:0.378:2	./.	./.	0/1:67,120:31:187:0.642:2	./.	./.	0/1:53,140:32:193:0.725:2	./.	./.
chr6	26444472	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:33:164:0.024:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,7:32:195:0.036:2
chr6	26445973	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:32:137:0.029:2	./.
chr6	26446053	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:128,5:27:133:0.038:2	./.	./.	./.	./.	./.	./.
chr6	26446209	rs3846848	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,37:32:95:0.389:2	0/1:25,23:33:48:0.479:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,35:32:80:0.438:2
chr6	26448824	rs76558307	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,13:30:34:0.382:2	0/1:13,3:30:16:0.188:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,17:30:46:0.370:2
chr6	26452161	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	26458871	rs146399224	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,5:30:82:0.061:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	26458872	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,5:28:82:0.061:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	26459997	rs143104579	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,73:31:119:0.613:2	./.	./.	./.	./.	./.	./.
chr6	26463574	rs13195401	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,17:30:39:0.436:2	0/1:27,17:30:44:0.386:2	./.	./.	./.
chr6	26463575	rs13195402	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,17:30:39:0.436:2	0/1:27,17:29:44:0.386:2	./.	./.	./.
chr6	26463660	rs13195509	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,52:30:111:0.468:2	0/1:38,46:29:84:0.548:2	./.	./.	./.
chr6	26466225	rs1977198	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:96,78:33:174:0.448:2	0/1:57,45:32:102:0.441:2	0/1:9,11:32:20:0.550:2	./.	./.	0/1:87,103:31:190:0.542:2	0/1:115,78:32:194:0.404:2	0/1:112,76:31:188:0.404:2	0/1:117,65:33:182:0.357:2	0/1:85,83:33:168:0.494:2	./.
chr6	26466234	rs4712999	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,98:33:192:0.510:2	0/1:56,57:32:113:0.504:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,88:33:189:0.466:2
chr6	26466336	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,5:26:125:0.040:2	./.
chr6	26468326	rs3734542	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,32:32:65:0.492:2	0/1:37,26:31:63:0.413:2	./.	./.	./.
chr6	26468545	rs3734543	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,68:32:198:0.343:2	0/1:125,68:32:193:0.352:2	./.	./.	./.
chr6	26468603	rs147342363	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,7:32:191:0.037:2	./.	0/1:185,4:33:189:0.021:2	0/1:172,5:30:178:0.028:2	./.
chr6	26468660	rs3734544	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:77,75:31:152:0.493:2	0/1:57,34:31:91:0.374:2	0/1:11,13:31:24:0.542:2	./.	0/1:103,87:30:190:0.458:2	./.	0/1:97,70:32:167:0.419:2	0/1:123,66:31:189:0.349:2	./.	./.	0/1:95,78:32:173:0.451:2
chr6	26501897	rs1321479	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:12,22:30:34:0.647:2	0/1:17,8:31:25:0.320:2	./.	./.	./.	./.	./.	0/1:43,33:31:76:0.434:2	./.	0/1:0,37:32:37:1.00:2	./.
chr6	26505362	rs3736781	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:50,28:32:78:0.359:2	0/1:26,16:31:43:0.381:2	./.	./.	./.	./.	./.	0/1:61,42:31:103:0.408:2	./.	0/1:0,64:31:64:1.00:2	0/1:118,4:32:122:0.033:2
chr6	26505403	rs3736782	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:29,18:32:47:0.383:2	0/1:19,12:31:31:0.387:2	./.	./.	./.	./.	./.	0/1:46,27:31:73:0.370:2	./.	0/1:0,53:31:53:1.00:2	./.
chr6	26509330	rs9393728	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:16,14:30:30:0.467:2	0/1:6,9:32:15:0.600:2	./.	./.	./.	./.	./.	0/1:25,13:32:38:0.342:2	./.	0/1:0,27:32:27:1.00:2	./.
chr6	26509382	rs35555795	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,18:30:46:0.391:2	0/1:23,24:31:47:0.511:2	./.	./.	./.
chr6	26545632	rs4871	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:40,26:32:67:0.394:2	0/1:15,14:32:29:0.483:2	./.	./.	./.	./.	./.	0/1:42,26:31:68:0.382:2	./.	0/1:0,56:31:56:1.00:2	./.
chr6	26545642	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:30:119:0.034:2	./.	./.
chr6	26546048	rs15580	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,96:32:96:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,11:32:11:1.00:2	./.	0/1:77,44:32:121:0.364:2	0/1:0,133:31:133:1.00:2	0/1:77,41:32:118:0.347:2	0/1:0,121:32:121:1.00:2	0/1:0,133:33:133:1.00:2	0/1:0,106:33:106:1.00:2	0/1:63,58:32:121:0.479:2
chr6	26546070	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,25:33:154:0.162:2	./.	./.
chr6	26546808	rs4573	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:40,35:32:75:0.467:2	0/1:33,23:32:56:0.411:2	./.	./.	./.	./.	./.	0/1:67,41:32:108:0.380:2	./.	0/1:43,24:32:67:0.358:2	./.
chr6	26597333	rs3800302	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,74:31:74:1.00:2	0/1:2,47:31:49:0.959:2	0/1:7,9:32:16:0.563:2	./.	0/1:70,48:30:118:0.407:2	./.	0/1:79,60:30:139:0.432:2	0/1:2,106:31:108:0.981:2	./.	0/1:0,85:32:85:1.00:2	0/1:49,49:30:98:0.500:2
chr6	26598188	rs3800303	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:38,58:31:96:0.604:2	0/1:34,49:32:83:0.590:2	./.	./.	./.	./.	./.	0/1:96,67:32:164:0.411:2	./.	0/1:0,115:33:115:1.00:2	./.
chr6	26598798	rs3800304	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	0/1:1,62:29:63:0.984:2	./.	./.	0/1:1,39:29:40:0.975:2	./.	./.
chr6	26637724	rs139332558	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,57:33:196:0.291:2	0/1:143,53:33:196:0.270:2	./.	./.	./.
chr6	26637796	rs145346169	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,46:31:175:0.263:2	./.
chr6	26638119	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,26:31:193:0.135:2	./.
chr6	26638503	rs148210763	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:121,75:31:196:0.383:2	0/1:76,58:31:134:0.433:2	./.	./.	0/1:121,69:30:190:0.363:2	./.	0/1:119,75:31:194:0.387:2	0/1:141,55:31:196:0.281:2	./.	./.	0/1:123,70:32:193:0.363:2
chr6	27100183	rs115254614	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,5:32:58:0.086:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	27101201	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.	./.	./.	./.
chr6	27101487	rs73739596	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,23:29:46:0.500:2	./.
chr6	27101782	rs139003942	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:31:10:0.600:2	./.	./.	0/1:25,30:32:55:0.545:2	./.	./.	./.	./.	./.
chr6	27102009	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	27102676	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,18:30:32:0.581:2	./.
chr6	27107345	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,6:31:152:0.039:2	./.	./.	./.	0/1:107,5:32:112:0.045:2	./.
chr6	27107384	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,5:29:107:0.047:2	./.	./.	./.	./.	./.
chr6	27107387	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,5:31:105:0.048:2	./.	./.	./.	./.	./.
chr6	27107393	rs61742445	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,36:30:66:0.545:2	./.
chr6	27114266	rs148508555	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,3:35:89:0.034:2	./.	./.	./.
chr6	27114353	rs183476782	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:150,4:32:154:0.026:2	0/1:81,5:34:86:0.058:2	./.	0/1:185,6:32:191:0.031:2	./.	0/1:186,6:32:192:0.031:2	0/1:187,5:34:192:0.026:2	./.	0/1:185,6:34:191:0.031:2	0/1:172,5:33:177:0.028:2	./.
chr6	27114425	rs202101103	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:139,32:31:171:0.187:2	0/1:79,27:32:106:0.255:2	./.	0/1:145,24:32:169:0.142:2	0/1:152,25:32:177:0.141:2	./.	0/1:128,65:32:193:0.337:2	0/1:131,43:32:174:0.247:2	0/1:117,24:33:141:0.170:2	0/1:117,59:33:176:0.335:2	./.
chr6	27114569	.	T	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:82,10:32:92:0.109:2	0/1:69,4:30:73:0.055:2	./.	./.	0/1:121,9:32:130:0.069:2	0/1:102,6:30:108:0.056:2	0/1:109,14:31:123:0.114:2	0/1:122,13:32:135:0.096:2	0/1:82,5:35:88:0.057:2	0/1:98,12:28:111:0.109:2	./.
chr6	27115069	rs7756481	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,53:29:125:0.424:2	./.	./.	0/1:0,73:31:73:1.00:2	./.	./.
chr6	27216699	rs5030965	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,53:31:114:0.465:2	./.
chr6	27219035	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,6:21:29:0.207:2	./.	./.	./.	./.	./.
chr6	27220621	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr6	27222539	rs1062834	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,41:32:102:0.402:2	./.	./.	0/1:48,42:33:90:0.467:2	./.	./.
chr6	27277051	rs41269255	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,32:30:65:0.492:2	0/1:29,18:31:47:0.383:2	0/1:4,5:32:9:0.556:2	0/1:29,50:30:79:0.633:2	0/1:47,25:31:72:0.347:2	0/1:49,41:30:90:0.456:2	./.	./.	./.	./.	./.
chr6	27277402	rs6456773	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:33:70:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,56:33:56:1.00:2	0/1:0,57:33:57:1.00:2
chr6	27277810	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,49:31:131:0.374:2	./.	./.	./.
chr6	27277868	rs148139460	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,74:31:167:0.443:2	./.	./.	./.	./.	./.	./.
chr6	27278020	rs16897515	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:31:11:0.364:2	./.	./.	./.	0/1:30,23:30:53:0.434:2	0/1:43,25:32:68:0.368:2	0/1:38,36:32:74:0.486:2	./.	./.
chr6	27278634	rs12191414	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,25:32:61:0.410:2	./.	./.	0/1:32,53:33:85:0.624:2	./.	./.
chr6	27279095	rs61736096	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,47:30:106:0.443:2	./.	./.	./.
chr6	27279774	rs17688097	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:32:4:1.00:2	0/1:31,16:32:47:0.340:2	./.	0/1:37,25:32:62:0.403:2	./.	./.	./.	./.	./.
chr6	27279852	rs2235233	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,10:29:36:0.278:2
chr6	27279877	rs11965377	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,27:31:49:0.551:2	0/1:18,12:30:30:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	27420048	rs61736956	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,54:32:103:0.524:2	./.	./.	./.
chr6	27420588	rs61736957	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,20:28:50:0.400:2	0/1:24,13:30:37:0.351:2	0/1:23,35:30:58:0.603:2	./.	./.	./.	./.	./.
chr6	27425185	rs1883216	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,27:32:51:0.529:2	0/1:14,12:31:26:0.462:2	0/1:0,8:31:8:1.00:2	0/1:25,23:31:48:0.479:2	0/1:0,33:31:33:1.00:2	0/1:0,48:31:48:1.00:2	0/1:1,37:32:38:0.974:2	./.	0/1:0,48:32:48:1.00:2	0/1:0,46:31:46:1.00:2	./.
chr6	27435707	rs2272814	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,9:33:22:0.409:2	0/1:11,10:32:21:0.476:2	0/1:0,3:30:3:1.00:2	0/1:9,9:30:18:0.500:2	0/1:0,16:31:16:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,18:32:18:1.00:2	0/1:19,11:32:31:0.367:2	0/1:0,37:32:37:1.00:2	0/1:0,30:31:30:1.00:2	./.
chr6	27775352	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:30:106:0.038:2
chr6	27775674	rs200484	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,31:31:109:0.284:2	./.	0/1:57,40:29:97:0.412:2	./.
chr6	27775697	rs200485	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,33:32:106:0.311:2	./.	0/1:51,37:32:88:0.420:2	./.
chr6	27776002	rs493283	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,35:29:195:0.179:2	./.	0/1:137,39:30:176:0.222:2	./.
chr6	27777904	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:29:61:0.067:2	./.	./.	./.	./.	./.
chr6	27778386	rs16868061	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,52:30:109:0.477:2	./.	./.	./.	./.	./.
chr6	27778662	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:30:76:0.053:2	./.	./.	./.	./.	./.
chr6	27782519	rs41269269	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:29:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	27791950	rs199539634	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,4:30:32:0.125:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	27792163	rs36108923	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,20:31:191:0.105:2	./.
chr6	27792221	rs200499	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,119:32:134:0.888:2	0/1:12,78:32:90:0.867:2	0/1:2,17:30:19:0.895:2	0/1:13,135:32:148:0.912:2	0/1:19,113:31:132:0.856:2	0/1:7,168:31:175:0.960:2	0/1:11,143:32:154:0.929:2	0/1:17,142:32:159:0.893:2	0/1:9,147:33:156:0.942:2	0/1:15,139:31:154:0.903:2	0/1:10,147:32:157:0.936:2
chr6	27792228	rs200498	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,123:32:126:0.976:2	0/1:8,76:32:84:0.905:2	0/1:1,16:31:17:0.941:2	0/1:9,135:32:144:0.938:2	0/1:10,102:31:112:0.911:2	0/1:3,159:31:162:0.981:2	0/1:4,136:32:140:0.971:2	0/1:8,139:32:147:0.946:2	0/1:5,136:32:141:0.965:2	0/1:5,141:32:146:0.966:2	0/1:5,150:32:155:0.968:2
chr6	27799045	rs200488	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,85:32:184:0.462:2	./.
chr6	27799258	rs41269273	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,12:28:43:0.279:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	27806652	rs144837583	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,5:30:85:0.059:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	27806664	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,6:29:81:0.074:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	27833174	rs200981	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,69:32:167:0.413:2	./.	0/1:32,65:31:97:0.670:2	./.
chr6	27833315	rs41269275	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,15:30:28:0.536:2	./.	./.
chr6	27833342	rs11966705	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,37:30:66:0.561:2	0/1:14,13:32:27:0.481:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	27834677	rs34144478	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,85:32:179:0.475:2	./.	./.
chr6	27834702	rs16868094	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,69:30:183:0.377:2	./.	./.	./.	./.	./.
chr6	27834877	rs11970638	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,15:32:47:0.319:2	0/1:15,19:32:34:0.559:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	27835055	rs116008322	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,68:31:121:0.567:2
chr6	27835131	rs200947	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,34:31:76:0.447:2	./.
chr6	27835160	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,48:30:118:0.407:2	./.	./.	./.	./.	./.
chr6	27835215	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:31:66:0.061:2	./.	./.	./.	./.
chr6	27835218	rs17763089	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,24:31:45:0.533:2	./.	./.	./.
chr6	27835226	rs149263970	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,14:32:28:0.500:2	./.
chr6	27835272	rs200948	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,10:27:19:0.526:2	./.	0/1:7,6:29:13:0.462:2	./.
chr6	27839746	rs200956	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,46:32:113:0.407:2	./.	0/1:60,53:33:113:0.469:2	./.	0/1:63,72:31:135:0.533:2	./.	0/1:60,67:32:127:0.528:2	./.
chr6	27858421	rs200973	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,31:29:65:0.477:2	0/1:28,20:30:48:0.417:2	0/1:43,25:29:68:0.368:2	./.
chr6	27860637	rs201955302	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,10:29:124:0.081:2	./.
chr6	27861643	rs186251163	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,44:33:99:0.444:2	./.	./.	./.	./.	./.	./.
chr6	27879200	rs34788973	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,22:32:64:0.344:2	./.	./.	./.
chr6	27879397	rs34957169	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,43:29:107:0.402:2	./.	./.
chr6	27879450	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,4:35:120:0.034:2	./.	./.	0/1:120,8:27:128:0.063:2	0/1:138,7:33:145:0.048:2	./.	./.	./.
chr6	27879982	rs61742093	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,33:33:68:0.485:2	./.	./.	./.
chr6	27925367	rs7767176	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:30:4:0.750:2	./.	0/1:13,12:31:25:0.480:2	./.	./.	./.	0/1:28,23:32:51:0.451:2	./.	./.
chr6	27925629	rs112779382	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,81:32:191:0.424:2	./.	./.	./.	./.	./.
chr6	28056463	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:31:84:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	28056646	rs35027728	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,32:32:59:0.542:2	./.	./.	./.	./.	./.	./.	./.
chr6	28116304	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,16:30:89:0.180:2	./.
chr6	28117331	rs62620225	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:32:8:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	28120898	rs17774663	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,60:32:117:0.513:2	./.	./.	./.	0/1:82,62:31:144:0.431:2	0/1:51,54:32:105:0.514:2	./.	./.
chr6	28121278	rs62620226	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,41:31:90:0.456:2	./.	./.
chr6	28134368	rs1150674	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,29:33:64:0.453:2	./.	./.	./.	0/1:14,24:32:38:0.632:2	./.
chr6	28134658	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,4:32:100:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr6	28195120	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:30:68:0.059:2	./.	./.	./.	./.
chr6	28195521	rs12197427	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,36:33:114:0.316:2	./.	./.	0/1:63,47:33:110:0.427:2	./.	./.	./.	./.
chr6	28219661	rs9986596	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:22,27:31:49:0.551:2	0/1:10,18:31:28:0.643:2	./.	./.	./.	./.	./.	0/1:25,19:31:44:0.432:2	./.	./.	./.
chr6	28219695	rs62638680	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,49:30:80:0.613:2	0/1:18,36:30:54:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	28227436	rs12000	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,23:32:50:0.460:2	0/1:33,26:32:59:0.441:2	0/1:25,29:32:54:0.537:2	./.	./.	0/1:20,16:33:36:0.444:2	0/1:19,29:33:48:0.604:2	0/1:23,21:34:44:0.477:2
chr6	28227604	rs1635	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,17:31:30:0.567:2	./.	./.	./.	./.	./.	./.	./.
chr6	28227860	rs3734564	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,8:32:20:0.400:2	./.	./.	./.	./.	./.	./.	./.
chr6	28228342	rs1679709	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:8,19:32:27:0.704:2	0/1:6,5:32:11:0.455:2	0/1:0,4:31:4:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,10:32:10:1.00:2	0/1:7,4:26:11:0.364:2	0/1:0,17:32:17:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,27:32:27:1.00:2
chr6	28239915	rs11965538	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:27,27:31:54:0.500:2	0/1:15,15:33:30:0.500:2	./.	./.	./.	./.	./.	0/1:43,44:32:87:0.506:2	./.	./.	./.
chr6	28239943	rs11965542	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,30:30:59:0.508:2	0/1:14,18:32:32:0.563:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	28264681	rs3800324	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,15:32:44:0.341:2	./.	./.	./.	./.	./.	./.	./.
chr6	28264692	rs3800325	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:35:6:0.667:2	./.	0/1:28,25:33:54:0.472:2	0/1:20,21:33:41:0.512:2	./.	./.	0/1:30,25:33:55:0.455:2	0/1:37,26:33:63:0.413:2	./.
chr6	28264717	rs3800326	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,14:30:26:0.538:2	./.	./.	./.	0/1:32,24:32:56:0.429:2	./.
chr6	28268524	rs185338871	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,32:30:81:0.395:2	./.	./.	./.	./.
chr6	28268824	rs33932084	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,8:33:29:0.276:2	./.	./.	./.
chr6	28269407	rs16893917	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,62:30:145:0.428:2	./.	./.	./.	./.	./.	./.	./.
chr6	28269663	rs1997660	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,42:33:86:0.488:2	0/1:36,41:32:77:0.532:2	0/1:11,6:33:17:0.353:2	0/1:57,48:33:105:0.457:2	0/1:40,35:32:75:0.467:2	0/1:46,40:32:86:0.465:2	./.	0/1:51,57:32:108:0.528:2	0/1:74,56:34:130:0.431:2	0/1:43,37:33:80:0.463:2	./.
chr6	28270047	rs6456811	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:32:9:0.444:2	./.	0/1:43,44:31:87:0.506:2	0/1:46,49:32:95:0.516:2	./.	./.	0/1:81,48:34:129:0.372:2	0/1:52,34:33:86:0.395:2	./.
chr6	28294499	rs34223404	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,28:32:63:0.444:2	./.
chr6	28294550	rs853684	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,33:32:82:0.402:2	0/1:39,20:31:59:0.339:2	0/1:4,3:32:7:0.429:2	0/1:41,49:33:90:0.544:2	0/1:29,28:32:57:0.491:2	0/1:58,39:32:97:0.402:2	./.	0/1:53,39:32:92:0.424:2	0/1:0,80:33:80:1.00:2	0/1:42,25:33:67:0.373:2	./.
chr6	28297313	rs853678	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:24,16:30:40:0.400:2	0/1:21,18:31:39:0.462:2	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	0/1:26,17:30:43:0.395:2	./.	./.	./.
chr6	28297368	rs41269297	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,47:31:87:0.540:2
chr6	28327371	rs733743	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,6:31:27:0.222:2	./.	./.
chr6	28331127	rs13201752	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,5:33:12:0.417:2	0/1:21,12:33:33:0.364:2	0/1:30,21:32:51:0.412:2	0/1:21,13:32:34:0.382:2	./.	0/1:26,15:33:41:0.366:2	0/1:25,20:33:45:0.444:2	0/1:20,19:33:40:0.487:2	./.
chr6	28331128	rs13201753	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,5:33:12:0.417:2	0/1:20,12:33:32:0.375:2	0/1:30,21:32:51:0.412:2	0/1:20,13:32:33:0.394:2	./.	0/1:25,15:33:40:0.375:2	0/1:25,20:32:45:0.444:2	0/1:20,20:33:40:0.500:2	./.
chr6	28331573	rs213227	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,11:33:38:0.289:2	0/1:9,16:33:25:0.640:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	28333396	rs17313059	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,66:29:135:0.489:2	./.	./.	./.	./.	./.	./.	./.
chr6	28358320	rs1361385	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,10:29:25:0.400:2	0/1:98,77:30:175:0.440:2	0/1:69,68:29:137:0.496:2	0/1:100,83:29:183:0.454:2	./.	0/1:113,81:30:194:0.418:2	0/1:107,71:31:178:0.399:2	0/1:83,83:30:166:0.500:2	./.
chr6	28358335	rs1416918	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,12:33:23:0.522:2	0/1:99,71:33:170:0.418:2	0/1:71,59:32:131:0.454:2	0/1:86,79:32:165:0.479:2	./.	0/1:106,69:32:175:0.394:2	0/1:106,64:34:170:0.376:2	0/1:87,74:33:161:0.460:2	./.
chr6	28358784	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:30:52:0.077:2	./.	./.	./.	./.
chr6	28358893	rs2232434	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,38:33:62:0.613:2	./.	./.	./.	./.	./.	./.	./.
chr6	28359170	rs2859348	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,67:32:133:0.504:2	0/1:54,46:32:100:0.460:2	0/1:12,10:33:22:0.455:2	0/1:77,79:33:156:0.506:2	0/1:83,50:32:133:0.376:2	0/1:98,57:32:155:0.368:2	./.	0/1:86,82:31:168:0.488:2	0/1:0,149:33:149:1.00:2	0/1:75,54:32:129:0.419:2	./.
chr6	28359186	rs2232430	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,84:33:163:0.515:2	./.	./.
chr6	28366151	rs2232423	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,69:30:151:0.457:2	./.	./.	./.
chr6	28402260	rs17315648	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,42:32:112:0.375:2	./.	./.	./.	./.	./.	./.	./.
chr6	28478555	rs35062161	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,23:32:49:0.469:2	./.	./.
chr6	28483482	rs406113	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,14:33:42:0.333:2	0/1:7,4:33:11:0.364:2	./.	./.	./.	0/1:23,14:32:37:0.378:2	./.	0/1:22,23:33:45:0.511:2	0/1:21,21:33:42:0.500:2	0/1:9,24:32:33:0.727:2	./.
chr6	28497339	rs115051243	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,14:30:27:0.519:2	0/1:6,11:32:17:0.647:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	28542424	rs450630	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:39,29:32:68:0.426:2	0/1:22,10:33:32:0.313:2	0/1:4,3:31:7:0.429:2	./.	0/1:17,19:30:36:0.528:2	0/1:38,30:31:68:0.441:2	./.	0/1:0,58:31:58:1.00:2	0/1:0,85:32:85:1.00:2	0/1:34,20:32:54:0.370:2	./.
chr6	28542520	rs370520	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:48,23:32:71:0.324:2	0/1:24,14:32:38:0.368:2	0/1:5,6:31:11:0.545:2	./.	0/1:34,24:32:58:0.414:2	0/1:63,44:31:107:0.411:2	./.	0/1:0,54:32:54:1.00:2	0/1:0,82:32:82:1.00:2	0/1:39,27:31:66:0.409:2	./.
chr6	28543089	rs41270593	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,6:30:28:0.214:2	./.	./.
chr6	28543264	rs17336532	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,5:30:12:0.417:2	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	./.
chr6	28543270	rs73740744	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,5:25:11:0.455:2	./.
chr6	29012067	rs35771565	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:32:10:0.500:2	./.	0/1:9,8:30:17:0.471:2	./.	0/1:12,3:32:15:0.200:2	0/1:12,3:32:15:0.200:2	0/1:13,12:32:25:0.480:2	./.
chr6	29012102	rs184513987	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,9:32:20:0.450:2	./.	./.	./.	./.	./.	./.	./.
chr6	29012116	rs7341218	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,9:31:23:0.391:2	./.	0/1:16,14:32:30:0.467:2	./.	0/1:14,9:33:23:0.391:2	0/1:15,4:32:19:0.211:2	0/1:10,14:33:24:0.583:2	./.
chr6	29079733	rs186761827	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,11:33:20:0.550:2	./.	./.	./.	./.	./.	./.	./.
chr6	29080004	rs28757581	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,16:28:39:0.410:2	0/1:10,10:28:20:0.500:2	./.	./.	./.	./.	./.	./.	0/1:17,19:30:36:0.528:2	./.	./.
chr6	29141743	rs3129157	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,73:29:73:1.00:2	./.	0/1:0,59:28:59:1.00:2	./.	0/1:0,78:27:78:1.00:2	./.	0/1:0,51:27:51:1.00:2	./.
chr6	29141849	rs3116856	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:34:3:0.667:2	./.	./.	./.	./.
chr6	29230520	rs79272343	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,7:31:7:1.00:2	./.	./.	./.	./.
chr6	29323655	rs7761746	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,6:32:12:0.500:2	0/1:6,5:32:11:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	29342236	rs9380122	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,8:33:19:0.421:2	./.	0/1:12,10:33:22:0.455:2	./.	./.	./.	./.	./.
chr6	29365325	rs36211075	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,13:32:26:0.500:2	0/1:7,3:32:10:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	29429732	rs61732184	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,9:33:16:0.563:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	29429733	rs61732185	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,10:30:17:0.588:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	29430213	rs17184086	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,7:32:14:0.500:2	0/1:3,4:31:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,11:32:28:0.393:2
chr6	29430346	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:35:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	29430405	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	29430429	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	29523859	rs2076487	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,21:31:37:0.568:2	0/1:2,9:33:11:0.818:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	29523872	rs2076486	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,24:30:35:0.686:2	0/1:0,8:32:8:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	29524003	rs2076484	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,23:31:27:0.852:2	0/1:0,11:30:11:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	29556379	rs141430371	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,8:32:16:0.500:2	./.
chr6	29556692	rs73404743	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,11:29:29:0.379:2	0/1:7,6:31:13:0.462:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	29635410	rs17184514	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	29796376	rs12722477	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,8:31:21:0.381:2	./.	./.	./.	./.	./.	./.	0/1:7,6:32:13:0.462:2
chr6	29910571	rs199474359	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.	./.	./.	./.
chr6	29910604	rs12721675	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:1,10:30:11:0.909:2	0/1:1,9:32:10:0.900:2	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.
chr6	29910698	rs1059449	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:1,48:31:49:0.980:2	0/1:1,26:32:27:0.963:2	./.	./.	./.	./.	./.	./.	./.	0/1:1,15:26:16:0.938:2	./.
chr6	29910703	rs41541222	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:1,51:32:52:0.981:2	0/1:0,27:32:27:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:1,14:33:15:0.933:2	./.
chr6	29910716	rs1059455	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:31:3:1.00:2
chr6	29910725	rs199474430	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.	./.	0/1:0,2:33:2:1.00:2
chr6	29910730	rs199474436	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.	./.	0/1:0,2:33:2:1.00:2
chr6	29910742	rs78306866	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,11:33:11:1.00:2	./.
chr6	29910759	rs1071742	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,7:32:7:1.00:2	./.
chr6	29910761	rs1136688	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,7:29:7:1.00:2	./.
chr6	29910801	rs1136692	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	./.	./.
chr6	29911056	rs1071743	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	./.	./.	./.	./.	./.
chr6	29911064	rs1136695	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:33:5:0.600:2	./.	./.	./.	./.	./.	./.	./.
chr6	29911069	rs1136697	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:29:5:0.600:2	./.	./.	./.	./.	./.	./.	./.
chr6	29911119	rs3173419	G	T,C	.	PASS	AC=1,1;AF=0.167,0.167;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant10	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	0/2:32:2:1.00:2	./.	./.	./.	./.	./.	0/1:30:3:1.00:2	./.	./.	./.	./.
chr6	29911154	rs1059509	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,12:32:12:1.00:2	./.	./.	0/1:0,15:31:15:1.00:2	./.	./.	./.	0/1:0,3:32:3:1.00:2
chr6	29911203	rs1059517	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:0,7:31:7:1.00:2	0/1:0,3:33:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.
chr6	29911218	rs1059526	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.
chr6	29911228	rs9256983	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:31:7:0.857:2	./.	./.	0/1:0,7:31:7:1.00:2	./.	./.	./.	0/1:0,4:32:4:1.00:2
chr6	29911239	rs9260155	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	./.	0/1:0,3:33:3:1.00:2	./.	./.	./.	0/1:0,2:33:2:1.00:2
chr6	29911240	rs9260156	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	./.	0/1:0,3:33:3:1.00:2	./.	./.	./.	0/1:0,2:33:2:1.00:2
chr6	29911951	rs1059570	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,17:31:18:0.944:2	./.	./.	0/1:0,13:32:13:1.00:2	./.	./.	./.	0/1:1,15:31:16:0.938:2
chr6	29911957	rs12721755	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,16:31:17:0.941:2	./.	./.	0/1:0,14:32:14:1.00:2	./.	./.	./.	0/1:1,14:29:15:0.933:2
chr6	29912041	rs9260181	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,13:29:19:0.684:2	./.	./.	0/1:1,14:30:15:0.933:2	./.	./.	./.	0/1:2,11:31:13:0.846:2
chr6	29912086	rs199474634	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,17:31:19:0.895:2	./.	./.	0/1:2,11:33:13:0.846:2	./.	./.	./.	0/1:2,10:33:12:0.833:2
chr6	29912098	rs142475339	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,20:28:21:0.952:2	./.	./.	0/1:2,14:29:16:0.875:2	./.	./.	./.	0/1:0,11:27:11:1.00:2
chr6	29912280	rs1136903	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:20,4:26:24:0.167:2	./.	./.	0/1:2,19:32:21:0.905:2	./.	./.	0/1:1,7:31:8:0.875:2	./.	./.	./.	0/1:1,16:31:17:0.941:2
chr6	29912281	rs1136917	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,19:31:21:0.905:2	./.	./.	0/1:1,7:32:8:0.875:2	./.	./.	./.	0/1:0,17:31:17:1.00:2
chr6	29912297	rs1136949	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,23:29:25:0.920:2	./.	./.	0/1:1,7:27:8:0.875:2	./.	./.	./.	0/1:0,21:27:21:1.00:2
chr6	29912368	rs1141891	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,29:33:30:0.967:2	./.	./.	0/1:0,13:32:13:1.00:2	./.	./.	./.	0/1:0,25:32:25:1.00:2
chr6	29912386	rs1137160	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,25:33:25:1.00:2	./.	./.	0/1:0,13:31:13:1.00:2	./.	./.	./.	0/1:0,27:31:27:1.00:2
chr6	29913042	rs14288	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:0,50:32:51:1.00:2	0/1:0,46:32:46:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:0,96:33:96:1.00:2	./.
chr6	29913074	rs9260205	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr6	29913078	rs41546815	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:34:3:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr6	29913191	rs2975055	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,6:28:54:0.113:2	0/1:35,4:30:39:0.103:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	29913204	rs115210534	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:33:44:0.091:2	0/1:28,5:34:33:0.152:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	30043486	rs11758516	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,5:33:14:0.357:2	0/1:9,6:32:15:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	30078235	rs138900010	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,6:31:17:0.353:2	./.	./.	./.	./.	./.	./.	./.
chr6	30124811	rs144731721	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:32:6:0.500:2	./.
chr6	30128442	rs12212092	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,7:32:7:1.00:2	./.
chr6	30131546	rs17194460	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:28:5:0.600:2	./.	./.	0/1:0,8:31:8:1.00:2	./.	./.	0/1:7,4:29:11:0.364:2	0/1:4,3:31:7:0.429:2
chr6	30154049	rs16897204	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:31:5:0.600:2
chr6	30229401	rs56794784	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,17:32:41:0.415:2	0/1:6,7:32:13:0.538:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	30230146	rs73425422	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,7:32:14:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	30313029	rs45626136	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,6:30:10:0.600:2	./.	./.	./.	./.	./.
chr6	30530245	rs2074504	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	30545651	rs186512183	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr6	30571997	rs1264422	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:24:9:0.333:2	./.
chr6	30623069	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,14:32:23:0.609:2	./.	./.	./.
chr6	30652729	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,3:32:8:0.375:2	./.
chr6	30652872	rs2269706	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,4:31:13:0.308:2	0/1:13,9:33:23:0.409:2	./.	./.	./.	./.
chr6	30653262	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	./.	./.	./.	./.
chr6	30657146	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,4:32:9:0.444:2	./.
chr6	30672342	rs3130645	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,12:33:18:0.667:2	./.	./.	./.	0/1:9,13:32:22:0.591:2	./.
chr6	30672433	rs3132589	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,7:31:19:0.368:2	./.	./.	./.	0/1:5,6:32:11:0.545:2	./.
chr6	30672463	rs10947087	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,11:32:20:0.550:2	0/1:7,4:33:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	30675605	rs28986467	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,18:30:33:0.545:2	./.	./.	./.	./.	./.
chr6	30680639	rs2517561	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,4:33:10:0.400:2	./.
chr6	30681766	rs181092448	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	30709991	rs116089201	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:32:9:0.333:2	./.	./.	./.	./.	./.
chr6	30857145	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,5:31:8:0.625:2
chr6	30860075	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.
chr6	30865279	rs116772905	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,13:31:36:0.361:2	./.	./.	./.
chr6	30878523	rs61748588	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,13:32:34:0.382:2	./.	./.	./.
chr6	30881103	rs1132408	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,7:32:14:0.500:2	0/1:2,3:32:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	30882803	rs6926723	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.
chr6	30887868	rs202201763	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,13:31:17:0.765:2	./.	./.	./.	./.	./.	./.	./.
chr6	30917482	rs112148530	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,4:29:13:0.308:2	./.	./.	./.
chr6	30917722	rs139941623	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:29:10:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr6	30918441	rs111658797	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,7:29:14:0.500:2	./.	./.	./.
chr6	30919141	rs11969476	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,3:31:17:0.176:2	./.	./.	./.	./.	./.	./.	./.
chr6	30920086	rs79792575	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,28:31:31:0.903:2	./.	./.	./.
chr6	30920890	rs2240804	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,4:32:8:0.500:2	0/1:0,10:33:10:1.00:2	./.	./.	0/1:0,4:34:4:1.00:2	./.	./.
chr6	30954150	rs111358184	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,7:32:18:0.389:2	./.	./.	./.	./.	./.	./.
chr6	30954369	rs9262324	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,3:33:18:0.167:2	./.	./.	./.	./.	./.	./.	./.
chr6	30954909	rs9262380	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.
chr6	30955010	rs41288689	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,7:27:10:0.700:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	31079371	rs2233983	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.
chr6	31079440	rs2233982	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:28:8:0.500:2	0/1:6,3:31:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	31079703	rs2233978	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,6:32:18:0.333:2	./.	./.	./.	./.	./.	./.	./.
chr6	31079894	rs2233977	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:26:12:0.250:2	./.	./.	./.	./.	./.	./.	./.
chr6	31079994	rs2233976	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,4:32:13:0.308:2	./.	./.	./.	./.	./.
chr6	31080320	rs2270191	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,8:32:10:0.800:2	./.	./.	./.	./.	./.	./.	./.
chr6	31084648	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.
chr6	31106065	rs2233950	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,7:25:10:0.700:2	./.	./.	./.
chr6	31106516	rs9501057	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,9:29:17:0.529:2	./.	./.	./.	./.	./.	./.
chr6	31113030	rs3132539	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:31:6:1.00:2	./.	0/1:0,9:30:9:1.00:2	0/1:0,29:32:29:1.00:2	./.	./.	./.	./.	./.
chr6	31116245	rs130069	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,17:32:24:0.708:2	0/1:0,7:33:7:1.00:2	./.	./.	./.	0/1:25,32:32:57:0.561:2	0/1:14,20:31:34:0.588:2	./.	./.	./.	./.
chr6	31116246	rs130068	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:17,5:28:22:0.227:2	./.	./.	./.	0/1:0,11:31:11:1.00:2	./.	./.	0/1:0,16:29:16:1.00:2	./.	0/1:3,7:29:10:0.700:2	./.
chr6	31122502	rs130075	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:33:3:1.00:2	./.	0/1:4,3:32:7:0.429:2	./.	./.	./.	./.	./.
chr6	31129642	rs2073722	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,19:31:19:1.00:2	./.	0/1:0,13:29:13:1.00:2	./.	./.	./.	./.	./.
chr6	31132405	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:34:100:0.040:2	./.	./.
chr6	31138134	rs201790772	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	31236899	rs193100294	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	0/1:1,8:32:9:0.889:2	./.
chr6	31236904	rs183137172	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,7:30:8:0.875:2	./.
chr6	31238204	rs41559418	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:33:4:1.00:2	./.	./.	./.	./.
chr6	31238210	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.
chr6	31238230	rs1050716	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:34:3:1.00:2	./.	./.	./.	./.
chr6	31238983	rs2308585	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.
chr6	31239050	rs713032	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:24:7:0.429:2	./.	./.	./.
chr6	31239378	rs1131123	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,6:32:6:1.00:2	0/1:0,6:32:6:1.00:2	./.	0/1:0,20:30:20:1.00:2	./.	0/1:0,13:30:13:1.00:2	0/1:0,14:31:14:1.00:2	./.	./.	./.	./.
chr6	31239518	rs1050420	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,3:33:3:1.00:2	./.	./.	0/1:0,2:32:2:1.00:2	./.	0/1:0,5:29:5:1.00:2	0/1:0,4:34:4:1.00:2	./.	./.	./.	./.
chr6	31322470	rs2442717	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:34:9:1.00:2	0/1:0,3:32:3:1.00:2	./.	./.	0/1:0,2:30:2:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,3:33:3:1.00:2	./.	./.	./.	./.
chr6	31322888	rs1140546	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.
chr6	31322980	rs1131500	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr6	31322987	rs1140487	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.
chr6	31322996	rs2074496	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	0/1:0,24:31:24:1.00:2	0/1:0,16:32:16:1.00:2	./.	./.	./.	./.
chr6	31323337	rs1050341	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:27:3:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr6	31323580	rs16899066	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,12:29:35:0.343:2	./.	./.	./.	./.	./.	./.	./.
chr6	31324024	rs697742	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	0/1:18,20:31:38:0.526:2	./.	0/1:3,3:31:6:0.500:2	./.	./.	./.
chr6	31324025	rs9266144	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,18:29:38:0.474:2	./.	./.	./.	./.	./.
chr6	31324036	rs151341293	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	0/1:18,21:31:39:0.538:2	./.	0/1:3,6:31:9:0.667:2	./.	./.	./.
chr6	31324057	rs12697943	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	31324077	rs709053	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,9:31:34:0.265:2	./.	./.	./.	./.	./.
chr6	31324100	rs1050654	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,12:31:16:0.750:2	./.	0/1:2,10:30:12:0.833:2	./.	./.	./.
chr6	31324145	rs9266150	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	0/1:2,5:33:7:0.714:2	./.	./.	./.
chr6	31324154	rs1050379	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.
chr6	31324506	rs1050388	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.
chr6	31324514	rs137854682	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.
chr6	31324536	rs1071816	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.
chr6	31324547	rs1065386	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:28:5:0.800:2	./.	./.	./.	./.	./.
chr6	31324549	rs1050570	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:30:5:0.800:2	./.	./.	./.	./.	./.
chr6	31324641	rs1050518	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,7:32:19:0.368:2	./.	0/1:3,3:28:6:0.500:2	./.	./.	./.
chr6	31324643	rs1050517	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,19:29:19:1.00:2	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.
chr6	31324742	rs147324178	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,8:24:8:1.00:2	./.	./.	./.	./.	./.
chr6	31378335	rs9380254	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,3:33:13:0.231:2	./.	./.	./.	./.
chr6	31378358	rs1063630	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,9:31:26:0.346:2	0/1:33,10:28:43:0.233:2	0/1:8,7:31:15:0.467:2	0/1:12,7:31:19:0.368:2	./.	./.	./.	./.
chr6	31378387	rs1063631	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,6:28:28:0.214:2	0/1:35,8:27:43:0.186:2	0/1:2,7:28:9:0.778:2	0/1:16,6:30:22:0.273:2	0/1:31,4:30:35:0.114:2	./.	./.	./.
chr6	31378425	rs1051786	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,3:33:26:0.115:2	./.	0/1:2,2:33:4:0.500:2	0/1:13,3:33:16:0.188:2	./.	./.	./.	./.
chr6	31378932	rs41556715	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,10:32:11:0.909:2	./.	./.	./.	./.	./.	./.	./.
chr6	31378977	rs1051792	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,7:33:21:0.333:2	0/1:12,8:31:20:0.400:2	./.	0/1:2,11:30:13:0.846:2	0/1:3,3:31:6:0.500:2	0/1:0,21:30:21:1.00:2	0/1:6,3:31:9:0.333:2	0/1:25,10:31:35:0.286:2	./.	0/1:0,8:32:8:1.00:2	./.
chr6	31379840	rs41540613	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	31382831	rs41546114	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,13:31:13:1.00:2	./.	./.	./.	./.	./.	./.
chr6	31431008	rs6905676	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:28:14:0.571:2	./.	./.	./.	./.	./.	./.	./.
chr6	31431508	rs78121360	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,11:30:27:0.407:2	./.	./.	./.	./.	./.	./.	./.
chr6	31431539	rs17206855	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:25:11:0.545:2	./.	./.	./.	./.	./.	./.	./.
chr6	31431691	rs2255221	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,3:33:19:0.158:2	./.	0/1:7,6:32:13:0.462:2	./.	./.
chr6	31431723	rs2255223	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,8:31:26:0.308:2	./.	0/1:11,12:32:23:0.522:2	./.	./.
chr6	31431757	rs11752262	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:15,9:33:24:0.375:2	0/1:4,9:32:13:0.692:2	./.	0/1:9,15:32:24:0.625:2	./.	./.	./.	./.	./.	0/1:16,9:34:25:0.360:2	./.
chr6	31431780	rs2395029	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,12:32:23:0.522:2	./.	./.	./.	./.	./.	./.
chr6	31474884	rs45627734	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,11:30:21:0.524:2	./.	./.	./.	./.	./.	./.
chr6	31498203	rs10819	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,5:33:30:0.167:2	./.	./.	./.	./.	./.	./.	./.
chr6	31504445	rs75750725	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	31506624	rs1129640	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:33:4:1.00:2	./.	0/1:0,11:32:11:1.00:2	./.	./.	./.	./.	./.
chr6	31556922	rs3179004	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:31:8:0.375:2	./.	./.	./.	./.	./.	./.	./.
chr6	31556928	rs3179003	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:29:8:0.375:2	./.	./.	./.	./.	./.	./.	./.
chr6	31583166	rs4711274	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,11:31:11:1.00:2	./.	./.	./.	./.	./.	./.
chr6	31583931	rs2269475	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,16:30:17:0.941:2	./.	./.	./.	./.	./.	./.
chr6	31595649	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	31597462	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	./.
chr6	31603174	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,25:32:53:0.472:2	./.	./.
chr6	31605278	rs1046756	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	31613274	rs191109252	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,18:31:37:0.486:2	./.	./.	./.	./.
chr6	31630196	rs146741893	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,22:28:43:0.512:2	./.	./.	./.	./.	./.	./.	./.
chr6	31635710	rs14365	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,12:32:12:1.00:2	./.	./.	./.	./.	./.	./.
chr6	31656514	rs75509151	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,6:31:14:0.429:2	./.	./.	./.
chr6	31670934	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	31675765	rs2242653	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,15:31:15:1.00:2	./.	./.	0/1:10,8:32:18:0.444:2	./.	./.	./.
chr6	31687080	rs151314696	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,6:32:8:0.750:2	./.
chr6	31695368	rs11540321	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,17:32:28:0.607:2	./.	./.	./.	./.	./.	./.
chr6	31708328	rs2075789	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.
chr6	31725978	rs28399976	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,7:29:18:0.389:2	./.	./.	./.
chr6	31732301	rs28399994	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,5:31:5:1.00:2	./.	./.	./.	./.	./.	./.
chr6	31735415	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	31737818	rs115526889	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,9:30:17:0.529:2	./.	./.	./.	./.	./.	./.
chr6	31748820	rs707926	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,12:30:22:0.545:2	./.	./.	0/1:18,8:31:26:0.308:2	./.	0/1:11,7:33:18:0.389:2	./.
chr6	31778529	rs2075799	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,10:31:25:0.400:2	./.	0/1:17,15:31:32:0.469:2	./.	./.	./.	./.	./.
chr6	31778948	rs34620296	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,4:29:14:0.286:2	./.	./.	./.	./.	./.	./.
chr6	31785078	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,36:30:128:0.281:2	./.	0/1:97,38:30:135:0.281:2	./.	./.	./.	./.	./.
chr6	31795745	rs34004874	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,4:30:13:0.308:2
chr6	31797272	rs41312325	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,21:30:133:0.158:2	./.	0/1:104,40:29:144:0.278:2	./.	./.	./.	./.	./.
chr6	31797719	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:32:98:0.041:2	./.	./.	./.
chr6	31838441	rs644827	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.
chr6	31842598	rs12661281	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:28:10:0.400:2	0/1:7,8:31:15:0.533:2	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.	./.	./.
chr6	31856212	rs113973079	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,10:29:16:0.625:2	./.	./.	./.	./.	./.	./.
chr6	31857376	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr6	31868765	rs114508013	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,3:33:21:0.143:2	0/1:7,3:32:10:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	31903804	rs9332739	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,4:29:5:0.800:2	./.	./.	./.	./.	./.	0/1:10,5:31:15:0.333:2	./.	./.	./.
chr6	31914024	rs4151667	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:11,12:33:23:0.522:2	0/1:10,6:32:16:0.375:2	./.	./.	./.	./.	./.	0/1:14,19:31:33:0.576:2	./.	./.	./.
chr6	31914179	rs12614	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,13:32:29:0.448:2	./.	0/1:11,7:31:18:0.389:2	./.	./.	./.	./.	./.
chr6	31915614	rs4151651	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,6:31:17:0.353:2
chr6	31935750	rs106287	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,14:32:29:0.483:2	./.	0/1:7,13:32:20:0.650:2	./.	./.
chr6	31936679	rs449643	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:27:5:0.600:2	./.	./.	./.	./.
chr6	31948272	rs151183324	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	31950651	rs142556478	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,7:30:27:0.259:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,4:30:25:0.160:2
chr6	31951933	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,15:32:42:0.357:2	./.	./.	./.	./.	./.	./.
chr6	31959300	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,14:32:23:0.609:2	0/1:18,12:31:30:0.400:2	0/1:34,5:32:39:0.128:2	./.	./.	./.	./.	./.
chr6	31959652	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:24,8:32:32:0.250:2	0/1:17,4:33:21:0.190:2	./.	0/1:32,19:32:51:0.373:2	./.	./.	./.	0/1:37,17:32:54:0.315:2	./.	0/1:26,8:32:35:0.235:2	0/1:35,18:32:53:0.340:2
chr6	31959945	.	A	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:18,12:34:30:0.400:2	0/1:16,3:33:19:0.158:2	./.	./.	./.	./.	./.	0/1:43,10:32:53:0.189:2	./.	./.	0/1:25,5:32:30:0.167:2
chr6	31960910	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,7:31:23:0.304:2	0/1:12,4:31:16:0.250:2	./.	0/1:10,8:34:18:0.444:2	0/1:13,3:32:16:0.188:2	./.
chr6	31962801	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,9:30:57:0.158:2	./.	./.	./.
chr6	31968833	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,4:29:14:0.286:2	./.	./.	./.	./.	./.
chr6	31983389	rs150655543	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,7:30:25:0.280:2	0/1:13,4:30:17:0.235:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,8:28:26:0.308:2
chr6	31984671	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,7:29:31:0.226:2	./.	./.	./.	./.	./.	./.
chr6	31984918	rs139889867	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,3:31:26:0.115:2	./.	./.	./.	./.	./.
chr6	31992038	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,9:32:24:0.375:2	0/1:17,10:30:27:0.370:2	0/1:25,12:32:37:0.324:2	./.	./.	./.	./.	./.
chr6	31992390	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:16,5:31:21:0.238:2	0/1:15,6:31:21:0.286:2	./.	0/1:44,8:32:52:0.154:2	./.	./.	./.	0/1:31,11:32:42:0.262:2	./.	0/1:33,8:32:41:0.195:2	0/1:35,10:32:45:0.222:2
chr6	31992683	.	A	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:30,9:33:39:0.231:2	0/1:13,6:32:19:0.316:2	./.	./.	./.	./.	./.	0/1:50,13:34:63:0.206:2	./.	./.	0/1:31,16:33:47:0.340:2
chr6	31993648	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:30:13:0.308:2	./.	./.	./.	./.	0/1:20,3:33:23:0.130:2	0/1:11,7:32:18:0.389:2	./.
chr6	31995539	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,10:31:28:0.357:2	./.	./.	./.
chr6	32006317	rs6468	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,18:30:25:0.720:2	0/1:3,12:32:15:0.800:2	./.	0/1:22,24:32:46:0.522:2	0/1:17,19:30:36:0.528:2	0/1:20,19:30:39:0.487:2	./.	./.	./.	0/1:9,20:31:29:0.690:2	./.
chr6	32006387	rs9378252	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,9:34:44:0.209:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,44:32:71:0.620:2
chr6	32007790	rs114645929	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,4:32:15:0.267:2	0/1:20,5:31:25:0.200:2	./.	./.	./.	./.	./.
chr6	32007840	rs144029176	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,17:29:35:0.500:2
chr6	32007849	rs6472	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,32:32:54:0.593:2	0/1:23,25:32:48:0.521:2	0/1:6,32:32:38:0.842:2	0/1:48,7:32:55:0.127:2	./.	0/1:32,7:31:39:0.179:2	0/1:15,13:31:28:0.464:2	./.
chr6	32009634	rs144415985	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,53:31:139:0.381:2	./.	./.	./.	./.	./.	./.
chr6	32009661	rs200523717	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,35:29:99:0.354:2	./.	./.	./.	./.	./.	./.
chr6	32009879	rs376281266	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,4:30:19:0.211:2
chr6	32010572	rs202148050	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:30:7:0.429:2	0/1:5,6:32:11:0.545:2	./.	./.	./.	./.
chr6	32012260	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,11:33:20:0.550:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	32012817	rs141851943	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:10,6:26:16:0.375:2	0/1:4,3:33:7:0.429:2	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:16,3:31:19:0.158:2
chr6	32012987	rs142041833	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,11:33:51:0.216:2	0/1:48,27:32:75:0.360:2	0/1:58,10:32:68:0.147:2	0/1:45,8:33:53:0.151:2	./.	0/1:37,7:33:44:0.159:2	0/1:27,16:32:43:0.372:2	./.
chr6	32017105	rs61740337	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2
chr6	32020512	rs17207895	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,5:33:9:0.556:2	./.	./.	./.	./.
chr6	32023903	rs440160	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	./.
chr6	32025870	rs2066982	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:30:11:0.727:2	./.	./.	./.	./.	./.	0/1:1,2:35:3:0.667:2	./.
chr6	32029183	rs2269429	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	./.	./.	./.	./.	./.
chr6	32035603	rs9469081	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:31:13:0.308:2	0/1:6,3:29:9:0.333:2	0/1:10,4:29:14:0.286:2	./.	./.	./.	0/1:3,6:32:9:0.667:2	./.
chr6	32036357	rs3749962	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,8:33:16:0.500:2	0/1:18,11:33:29:0.379:2	0/1:11,9:32:20:0.450:2	./.	./.	./.	0/1:10,16:32:26:0.615:2	./.
chr6	32036788	rs17207923	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,18:30:36:0.500:2	./.	./.	./.	./.	./.	0/1:5,4:31:9:0.444:2	./.
chr6	32041614	rs192631019	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,5:32:9:0.556:2	./.	./.	./.	./.	./.	./.
chr6	32056580	rs204900	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:34:6:0.667:2	0/1:9,4:33:13:0.308:2	0/1:6,9:33:15:0.600:2	./.	./.	./.	0/1:6,3:33:9:0.333:2	./.
chr6	32063681	rs17201602	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:30:7:0.857:2	./.	0/1:4,9:29:13:0.692:2	./.	./.	./.	./.	./.
chr6	32065023	rs41270461	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,6:32:17:0.353:2	./.	0/1:4,6:32:10:0.600:2	./.	./.	./.	0/1:9,7:32:16:0.438:2	./.
chr6	32065113	rs61746206	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,6:29:11:0.545:2	./.	./.	./.	./.	./.	./.
chr6	32093922	rs204894	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,8:31:16:0.500:2	./.	0/1:11,10:32:21:0.476:2	./.	./.
chr6	32130329	rs34129552	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:27:8:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr6	32132417	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr6	32164178	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	32165300	rs8192576	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,3:32:11:0.273:2	./.	./.	./.	./.
chr6	32166449	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	32180684	rs150079294	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,9:31:24:0.375:2	./.	./.
chr6	32181517	rs41270472	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:33:9:0.333:2	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.
chr6	32188297	rs423023	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,2:34:3:0.667:2	0/1:0,5:33:5:1.00:2	./.	0/1:0,4:31:4:1.00:2	./.	./.	./.
chr6	32188603	rs520803	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,8:32:20:0.400:2	0/1:2,3:29:5:0.600:2	./.	0/1:12,8:32:20:0.400:2	0/1:23,14:31:37:0.378:2	0/1:0,12:29:12:1.00:2	./.	0/1:1,11:31:12:0.917:2	./.	./.	0/1:12,8:31:20:0.400:2
chr6	32188640	rs520692	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,5:32:17:0.294:2	0/1:2,3:30:5:0.600:2	./.	0/1:16,3:32:19:0.158:2	0/1:20,9:30:29:0.310:2	0/1:0,11:31:11:1.00:2	./.	0/1:0,5:32:5:1.00:2	./.	0/1:9,3:32:12:0.250:2	0/1:12,5:31:17:0.294:2
chr6	32188642	rs520688	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,5:29:17:0.294:2	0/1:3,3:28:6:0.500:2	./.	0/1:15,3:28:18:0.167:2	0/1:20,9:27:29:0.310:2	0/1:1,10:27:11:0.909:2	./.	0/1:0,5:27:5:1.00:2	./.	0/1:8,3:29:11:0.273:2	0/1:12,5:30:17:0.294:2
chr6	32188823	rs8192585	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	32189032	rs415929	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,6:26:12:0.500:2	0/1:4,10:28:14:0.714:2	./.	0/1:8,7:29:15:0.467:2	0/1:15,8:28:23:0.348:2	0/1:0,25:29:25:1.00:2	./.	0/1:1,22:29:23:0.957:2	./.	0/1:6,9:28:15:0.600:2	0/1:6,7:27:13:0.538:2
chr6	32190390	rs915894	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,14:31:51:0.275:2	./.	./.	./.	./.	./.	./.
chr6	32190406	rs443198	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,18:29:51:0.353:2	./.	0/1:34,6:31:40:0.150:2	./.	./.	./.	0/1:16,7:32:23:0.304:2	./.
chr6	32298410	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,9:14:42:0.220:2	./.	./.	./.
chr6	32362639	rs41535850	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:2,6:28:8:0.750:2	./.	./.	./.	./.	0/1:25,9:32:34:0.265:2	0/1:7,7:32:14:0.500:2	./.	./.	0/1:6,6:31:12:0.500:2
chr6	32362669	rs41449245	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,6:32:26:0.231:2	0/1:11,3:31:14:0.214:2	./.	./.	0/1:5,3:33:8:0.375:2
chr6	32362741	rs28362677	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:9,7:30:16:0.438:2	./.	./.	./.	./.	./.	0/1:15,3:30:18:0.167:2	0/1:10,7:30:17:0.412:2	./.	./.	./.
chr6	32362745	rs28362678	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:10,8:33:18:0.444:2	./.	./.	./.	./.	./.	0/1:15,3:33:18:0.167:2	0/1:12,8:34:20:0.400:2	./.	./.	./.
chr6	32363893	rs28362679	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,3:31:17:0.176:2	./.	./.	./.	./.	./.	./.	./.
chr6	32370794	rs60036207	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,3:32:19:0.158:2	./.	./.	./.	./.	./.	./.
chr6	32372863	rs28362682	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.	0/1:25,36:32:61:0.590:2	./.	./.	./.	./.	./.	./.
chr6	32372963	rs28362683	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:31:5:0.800:2	./.	0/1:11,9:31:20:0.450:2	./.	./.	./.	./.	./.	./.
chr6	32411646	rs7192	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:36,4:30:40:0.100:2	0/1:23,3:30:26:0.115:2	./.	0/1:0,4:26:4:1.00:2	./.	./.	./.	0/1:0,5:31:5:1.00:2	./.	./.	0/1:0,3:31:3:1.00:2
chr6	32486402	rs41553512	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,74:31:74:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr6	32487175	rs77866376	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:33:7:0.571:2	./.	./.	./.	0/1:1,2:32:3:0.667:2
chr6	32487214	rs144016913	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,57:33:57:1.00:2	./.	./.	0/1:6,3:25:9:0.333:2	0/1:1,5:28:6:0.833:2	./.	./.	0/1:0,3:33:3:1.00:2
chr6	32487241	rs41541115	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,44:31:45:0.978:2	./.	./.	./.	./.	./.	./.	./.
chr6	32487242	rs41559420	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,44:31:45:0.978:2	./.	./.	./.	./.	./.	./.	./.
chr6	32487309	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,28:30:28:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr6	32487420	rs138786370	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,73:33:73:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr6	32489707	rs41559714	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:123,12:32:135:0.089:2	./.	./.	./.	./.	./.	./.	./.
chr6	32489708	rs41556512	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:123,12:30:135:0.089:2	./.	./.	./.	./.	./.	./.	./.
chr6	32489711	rs1136778	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:120,12:32:133:0.091:2	./.	./.	./.	./.	./.	./.	./.
chr6	32489749	rs1064594	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,47:32:47:1.00:2	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2
chr6	32489753	rs41544215	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2
chr6	32489754	rs201925120	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2
chr6	32489766	rs41562819	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,11:30:109:0.101:2	./.	./.	./.	./.	./.	./.	./.
chr6	32489853	rs78961241	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,51:30:51:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr6	32489856	rs77853982	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,51:29:51:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr6	32489876	rs41546317	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,70:32:71:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr6	32489949	rs1136744	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,47:30:47:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr6	32497905	rs71549219	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:53,8:33:61:0.131:2	./.	./.	0/1:107,5:33:112:0.045:2	0/1:66,5:31:71:0.070:2	./.	0/1:2,7:32:9:0.778:2	0/1:5,7:31:12:0.583:2	./.	./.	0/1:0,5:35:5:1.00:2
chr6	32497917	rs71549220	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:53,6:32:59:0.102:2	./.	./.	./.	./.	./.	0/1:2,3:33:5:0.600:2	0/1:7,5:32:12:0.417:2	./.	./.	0/1:0,3:33:3:1.00:2
chr6	32497961	rs1064587	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,70:31:70:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr6	32497962	rs701884	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,70:33:70:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr6	32546828	rs1064697	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:44,4:33:48:0.083:2	0/1:24,3:34:27:0.111:2	./.	./.	./.	./.	0/1:1,4:32:5:0.800:2	0/1:2,10:32:12:0.833:2	./.	./.	0/1:0,7:28:7:1.00:2
chr6	32546832	rs36217728	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:50,5:30:55:0.091:2	0/1:23,6:31:29:0.207:2	./.	./.	./.	./.	0/1:1,7:30:8:0.875:2	0/1:2,11:31:13:0.846:2	./.	./.	0/1:0,10:25:10:1.00:2
chr6	32546838	rs1064694	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:49,8:30:57:0.140:2	0/1:25,11:33:36:0.306:2	./.	./.	./.	./.	0/1:1,10:34:11:0.909:2	0/1:2,12:32:14:0.857:2	./.	./.	0/1:0,14:34:14:1.00:2
chr6	32546866	rs9269693	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,12:32:71:0.169:2	./.	./.	./.	./.	./.	./.	./.
chr6	32546894	rs35985423	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,19:32:83:0.229:2	./.	./.	./.	./.	./.	./.	./.
chr6	32547995	rs35428228	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:35:4:0.500:2	./.
chr6	32547997	rs41287241	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.
chr6	32548001	rs28732248	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.
chr6	32548068	rs4498414	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:107,84:31:192:0.440:2	0/1:77,58:32:135:0.430:2	./.	./.	./.	./.	0/1:1,83:31:84:0.988:2	0/1:0,87:31:87:1.00:2	./.	./.	0/1:0,139:31:139:1.00:2
chr6	32548082	rs28732255	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.
chr6	32548581	rs113175445	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:32,21:31:53:0.396:2	0/1:19,15:31:34:0.441:2	./.	./.	./.	./.	0/1:10,7:32:17:0.412:2	0/1:7,16:31:23:0.696:2	./.	./.	0/1:6,24:29:30:0.800:2
chr6	32549475	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2
chr6	32549501	rs78466762	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,4:33:9:0.444:2	./.	./.	./.	0/1:0,2:31:2:1.00:2
chr6	32549596	rs2308759	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:29,4:32:33:0.121:2	./.	./.	./.	./.	0/1:2,2:36:4:0.500:2	0/1:2,14:32:16:0.875:2	./.	./.	0/1:0,2:34:2:1.00:2
chr6	32549614	rs140866337	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,6:33:59:0.102:2	./.	./.	./.	./.	./.	./.	./.
chr6	32551911	rs17882028	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,6:31:69:0.087:2	./.	./.	./.	./.	./.	./.	./.
chr6	32551912	rs17885482	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,6:30:69:0.087:2	./.	./.	./.	./.	./.	./.	./.
chr6	32551915	rs17424145	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,62:32:71:0.886:2	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.
chr6	32551957	rs9269942	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:29:4:0.750:2	./.	./.	./.	0/1:0,2:29:2:1.00:2
chr6	32551961	rs17881965	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2
chr6	32551970	rs17886918	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,12:29:104:0.115:2	./.	./.	./.	./.	./.	./.	./.
chr6	32551995	rs17853229	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	0/1:0,7:29:7:1.00:2
chr6	32551998	rs17853228	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	0/1:0,7:31:7:1.00:2
chr6	32552029	rs17884945	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,46:28:48:0.979:2	./.	./.	./.	./.	./.	./.	0/1:9,3:29:12:0.250:2
chr6	32552059	rs17883134	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,7:28:7:1.00:2	./.	./.	./.	./.	0/1:1,6:30:7:0.857:2
chr6	32552060	rs16822820	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,6:30:7:0.857:2
chr6	32552067	rs17882603	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,7:31:7:1.00:2	./.	./.	./.	./.	./.
chr6	32552075	rs1064664	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,6:32:6:1.00:2
chr6	32557435	rs9270299	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:72,53:32:125:0.424:2	0/1:48,32:31:80:0.400:2	./.	0/1:2,66:32:68:0.971:2	./.	./.	0/1:1,81:32:82:0.988:2	0/1:7,90:32:97:0.928:2	./.	./.	0/1:0,74:32:74:1.00:2
chr6	32605284	rs12722039	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,44:31:110:0.400:2	./.	./.	./.	0/1:60,49:32:109:0.450:2	./.	./.	./.
chr6	32605295	rs1129735	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,42:32:95:0.442:2	./.	./.	./.
chr6	32605309	rs12722042	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,45:33:96:0.469:2	./.	./.	./.	0/1:47,35:31:82:0.427:2	./.	./.	./.
chr6	32609094	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:31:11:1.00:2	./.	./.	./.	0/1:115,79:32:194:0.407:2	./.	./.	./.	0/1:107,84:32:191:0.440:2
chr6	32609147	rs12722051	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:32:10:1.00:2	./.	./.	./.	0/1:90,64:32:154:0.416:2	./.	./.	./.	0/1:94,81:32:175:0.463:2
chr6	32609173	rs10093	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:70,72:33:142:0.507:2	0/1:47,36:32:83:0.434:2	./.	0/1:69,66:32:135:0.489:2	./.	./.	0/1:46,62:32:108:0.574:2	0/1:1,162:32:165:0.994:2	./.	./.	0/1:57,81:32:138:0.587:2
chr6	32609192	rs1142323	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.
chr6	32609195	rs36219699	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.	./.	./.	0/1:68,47:32:115:0.409:2	./.	./.	./.	0/1:92,51:32:143:0.357:2
chr6	32609207	rs1142324	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.
chr6	32609323	rs142591955	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,39:31:89:0.438:2	./.	./.	./.	./.
chr6	32609789	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:188,9:30:197:0.046:2	./.	./.	./.	./.	./.	./.
chr6	32609813	rs707951	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:33:4:1.00:2	0/1:101,80:33:181:0.442:2	0/1:183,9:33:192:0.047:2	./.	0/1:116,20:32:136:0.147:2	./.	./.	./.	0/1:128,46:34:174:0.264:2
chr6	32609873	rs707950	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:170,4:31:174:0.023:2	./.	0/1:170,26:28:196:0.133:2	./.	./.	./.	0/1:142,50:30:192:0.260:2
chr6	32609874	rs41547417	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,26:28:195:0.133:2	./.	./.	./.	0/1:142,49:28:191:0.257:2
chr6	32610436	rs1048372	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:113,80:30:193:0.415:2	0/1:79,56:30:135:0.415:2	./.	0/1:112,75:31:187:0.401:2	./.	./.	0/1:121,74:30:195:0.379:2	0/1:6,172:31:178:0.966:2	./.	0/1:0,2:27:2:1.00:2	0/1:113,80:30:194:0.415:2
chr6	32610437	rs35087390	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,76:31:186:0.409:2	./.	./.	./.
chr6	32610461	rs9260	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:118,74:29:192:0.385:2	0/1:104,79:28:183:0.432:2	0/1:0,21:29:21:1.00:2	0/1:126,68:30:194:0.351:2	./.	./.	0/1:1,181:29:182:0.995:2	0/1:6,174:29:180:0.967:2	./.	./.	0/1:2,185:29:187:0.989:2
chr6	32610535	rs1130116	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,15:32:15:1.00:2	./.	./.	./.	0/1:113,79:32:192:0.411:2	./.	./.	./.	0/1:117,72:33:189:0.381:2
chr6	32627988	rs1049178	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:32:8:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr6	32627991	rs1049177	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:32:8:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr6	32628001	rs1049175	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:42,8:35:50:0.160:2	0/1:34,6:33:40:0.150:2	./.	0/1:0,20:31:20:1.00:2	./.	./.	0/1:71,5:35:76:0.066:2	0/1:0,26:35:26:1.00:2	./.	./.	0/1:67,13:33:80:0.163:2
chr6	32628045	rs9273472	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:45,19:32:66:0.297:2	0/1:39,11:31:50:0.220:2	./.	0/1:32,23:32:55:0.418:2	./.	./.	0/1:59,21:32:80:0.263:2	0/1:0,51:31:51:1.00:2	./.	./.	0/1:75,32:31:107:0.299:2
chr6	32628057	rs200217035	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,24:30:50:0.480:2	./.	./.	./.	./.	./.	./.	./.
chr6	32628058	rs201735626	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,24:31:50:0.480:2	./.	./.	./.	./.	./.	./.	./.
chr6	32628660	rs28688207	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,67:33:130:0.515:2	./.	./.	./.
chr6	32629129	rs1130432	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:24,25:31:49:0.510:2	0/1:19,14:29:33:0.424:2	./.	0/1:0,33:31:33:1.00:2	./.	./.	0/1:27,28:30:55:0.509:2	0/1:1,40:30:41:0.976:2	./.	./.	0/1:25,18:29:43:0.419:2
chr6	32629155	rs1130431	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:32,37:31:69:0.536:2	0/1:26,16:32:42:0.381:2	./.	0/1:0,49:31:49:1.00:2	./.	./.	0/1:38,43:31:81:0.531:2	0/1:3,66:32:70:0.957:2	./.	./.	0/1:34,24:30:58:0.414:2
chr6	32629847	rs1049133	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:19,31:32:50:0.620:2	0/1:15,15:33:30:0.500:2	./.	0/1:0,44:32:44:1.00:2	./.	./.	0/1:38,27:31:65:0.415:2	0/1:4,47:31:51:0.922:2	./.	./.	0/1:39,26:32:65:0.400:2
chr6	32629859	rs1049130	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:23,31:28:54:0.574:2	0/1:15,12:29:27:0.444:2	./.	0/1:0,38:28:38:1.00:2	./.	./.	0/1:36,30:28:66:0.455:2	0/1:2,50:27:52:0.962:2	./.	./.	0/1:40,27:29:67:0.403:2
chr6	32629868	rs1049088	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:26,34:32:60:0.567:2	0/1:13,13:31:26:0.500:2	./.	0/1:0,44:32:44:1.00:2	./.	./.	0/1:35,29:31:64:0.453:2	0/1:1,51:32:52:0.981:2	./.	./.	0/1:41,32:33:73:0.438:2
chr6	32629931	rs41542812	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,40:32:94:0.426:2	./.	./.	./.	./.	./.	./.	./.
chr6	32629936	rs1049107	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:40,34:32:74:0.459:2	0/1:28,22:32:50:0.440:2	./.	0/1:0,96:32:96:1.00:2	./.	./.	0/1:71,56:32:127:0.441:2	0/1:0,113:32:113:1.00:2	./.	./.	0/1:57,52:32:109:0.477:2
chr6	32629963	rs1049100	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:41,39:31:80:0.488:2	0/1:31,25:31:56:0.446:2	./.	0/1:0,116:30:116:1.00:2	./.	./.	0/1:98,72:30:170:0.424:2	0/1:1,166:31:167:0.994:2	./.	./.	0/1:65,56:31:121:0.463:2
chr6	32632587	rs1130397	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.
chr6	32632714	rs3210148	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr6	32632745	rs1063318	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr6	32632770	rs1049069	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:30:3:1.00:2	0/1:0,3:25:3:1.00:2	./.	./.	0/1:1,42:32:43:0.977:2	./.	./.	./.	0/1:0,33:33:33:1.00:2
chr6	32632777	rs1049068	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	0/1:1,42:28:43:0.977:2	./.	./.	./.	0/1:1,27:30:28:0.964:2
chr6	32632832	rs9274407	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,23:27:23:1.00:2	./.	./.	./.	0/1:0,22:29:22:1.00:2
chr6	32634302	rs1049062	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:32:6:1.00:2	./.	./.	./.	./.	./.	./.	0/1:16,3:33:19:0.158:2
chr6	32634303	rs1049061	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:31:6:1.00:2	./.	./.	./.	./.	./.	./.	0/1:16,3:28:19:0.158:2
chr6	32634313	rs1049059	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:26,4:31:30:0.133:2	./.	./.	0/1:0,9:32:9:1.00:2	./.	./.	0/1:30,3:32:33:0.091:2	0/1:1,8:33:9:0.889:2	./.	./.	0/1:17,5:30:22:0.227:2
chr6	32634369	rs1049056	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:24,5:29:29:0.172:2	./.	./.	0/1:0,14:30:14:1.00:2	./.	./.	./.	0/1:2,12:30:14:0.857:2	./.	./.	0/1:23,5:24:28:0.179:2
chr6	32709219	rs147432782	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,3:34:19:0.158:2	./.	./.	./.	./.	./.	./.
chr6	32713598	rs138296677	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,3:32:35:0.086:2	./.	./.	./.	./.	./.	./.
chr6	32713674	rs34357612	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,6:31:43:0.140:2	./.	0/1:38,4:33:42:0.095:2	./.	./.	./.	./.
chr6	32713693	rs146057838	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,6:28:46:0.130:2	./.	./.	./.	./.
chr6	32713752	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:31:46:0.087:2	./.	./.	./.	./.	./.
chr6	32713828	rs116659129	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,3:33:28:0.107:2	./.	./.	./.	./.
chr6	32714058	rs78163898	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:31:45:0.089:2	./.	./.	./.
chr6	32714067	rs17213351	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:29:54:0.074:2	./.	./.	./.
chr6	32714091	rs149033708	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:22,4:29:26:0.154:2	./.	./.	./.	./.	0/1:49,5:28:56:0.093:2	0/1:45,8:29:53:0.151:2	./.	./.	./.
chr6	32726753	rs114145988	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:33:5:0.800:2	./.	./.	./.
chr6	32781554	rs2070121	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,6:30:13:0.462:2	./.	./.	./.	./.	./.
chr6	32782149	rs17501267	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,15:30:44:0.341:2	./.	./.	./.	./.	./.
chr6	32800221	rs2856992	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:29:5:0.600:2	./.	./.
chr6	32800224	rs2228397	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:30:9:0.444:2	0/1:3,4:26:7:0.571:2	0/1:0,3:29:3:1.00:2	0/1:4,3:29:7:0.429:2	./.	0/1:0,5:33:5:1.00:2	./.	./.
chr6	32806007	rs61736918	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr6	32809947	rs11540143	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	./.	./.	./.	./.
chr6	32809965	rs41270492	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,13:31:14:0.929:2	./.	./.	./.
chr6	32814942	rs1057149	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,5:31:8:0.625:2	./.	./.	./.	./.	./.
chr6	32814975	rs1135216	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:32:8:0.500:2	./.	./.	./.	./.	./.
chr6	32818774	rs1057141	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,11:32:27:0.407:2	0/1:2,7:31:9:0.778:2	./.	0/1:11,5:30:16:0.313:2	./.	./.	./.
chr6	32823948	rs241419	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,6:32:13:0.462:2	./.	0/1:6,16:31:22:0.727:2
chr6	32844850	rs115573843	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,3:32:8:0.375:2	./.	./.	./.
chr6	32905086	rs2071555	G	A,T	.	PASS	AC=2,2;AF=0.167,0.167;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/2:34:34:0.471:2	0/2:31:30:0.333:2	0/1:32:28:0.429:2	./.	0/1:31:21:0.619:2
chr6	32906586	rs17617321	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,10:31:20:0.500:2	./.	./.	./.	./.	./.	./.
chr6	32906652	rs17617333	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,6:30:16:0.375:2	./.	./.	./.	./.	./.	./.
chr6	32917411	rs41555121	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	./.	./.	./.	./.	./.
chr6	32917412	rs17214044	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,2:33:3:0.667:2	0/1:5,4:33:9:0.444:2	./.	0/1:6,3:33:9:0.333:2	./.	./.	./.	./.	./.	./.	./.
chr6	32917422	rs150131046	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,6:32:10:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	32920165	rs115420072	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,14:33:19:0.737:2	./.	0/1:10,3:34:13:0.231:2
chr6	32937076	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.
chr6	32944065	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:29:42:0.095:2	./.	./.	./.	./.	./.
chr6	32945625	rs3918143	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,6:30:7:0.857:2	./.	0/1:12,8:31:20:0.400:2	0/1:11,12:31:23:0.522:2	./.	./.	./.
chr6	32974924	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,15:32:19:0.789:2	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	33036435	rs1126769	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,4:30:15:0.267:2	./.	./.	./.	./.	./.
chr6	33036505	rs1042434	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,5:33:14:0.357:2	./.	./.	./.	./.	0/1:9,5:32:14:0.357:2
chr6	33036853	rs1042308	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:30:7:0.571:2	./.	./.	./.	./.	0/1:5,9:27:14:0.643:2
chr6	33036999	rs1042190	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,3:34:8:0.375:2	./.	./.	./.	./.	./.
chr6	33037587	rs2308910	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,9:30:13:0.692:2	./.	./.	./.	./.	./.	./.	./.
chr6	33037626	rs1042174	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:26:6:0.500:2
chr6	33048532	rs12722018	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	./.	./.	./.	./.	0/1:0,5:33:5:1.00:2
chr6	33048539	rs1042117	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:25:10:0.500:2	./.	./.	./.	./.	0/1:6,3:29:9:0.333:2	./.	0/1:0,6:28:6:1.00:2
chr6	33048564	rs12722022	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:27:10:0.600:2	./.	./.	./.	./.	0/1:6,6:31:12:0.500:2	./.	0/1:0,8:32:8:1.00:2
chr6	33048628	rs1042136	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:30:9:0.667:2	./.	./.	./.	./.	0/1:4,3:26:7:0.429:2	./.	0/1:0,3:30:3:1.00:2
chr6	33048641	rs12722027	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:32:7:0.714:2	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2
chr6	33048686	rs1042169	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:30:5:0.800:2	./.	./.	./.	./.	./.	./.	./.
chr6	33053609	rs11551421	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.
chr6	33053640	rs3097675	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:33:10:0.300:2	./.	./.	./.	./.	./.	./.	./.
chr6	33133780	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	33148774	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:31:8:0.625:2	./.	./.	./.	./.	./.	./.	./.
chr6	33165586	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	33169281	rs34211188	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,6:30:20:0.300:2	./.
chr6	33169392	rs35690712	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:28:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	33169895	rs1547387	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,13:31:20:0.650:2	0/1:7,4:28:11:0.364:2	./.	0/1:12,8:31:20:0.400:2	0/1:8,9:30:17:0.529:2	0/1:7,12:30:19:0.632:2	./.	./.	./.	./.	./.
chr6	33172442	rs150495100	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,7:31:19:0.368:2	0/1:4,6:32:10:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	33174141	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	33239869	rs17215231	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:30:5:1.00:2	./.	0/1:0,18:30:18:1.00:2	./.	./.	./.	./.	./.	./.
chr6	33247595	rs72654497	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,5:32:14:0.357:2	./.	./.	./.	./.	./.
chr6	33256653	rs34931270	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr6	33260215	rs35273540	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:34:10:0.300:2	./.
chr6	33261864	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:33:35:0.114:2	./.	./.	./.	./.	./.
chr6	33272813	rs201276892	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,14:11:61:0.230:2	./.	./.	./.	./.	./.	./.
chr6	33282922	rs61734030	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:32:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	33286825	rs11873	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.
chr6	33287183	rs2051625	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,4:34:15:0.267:2	./.
chr6	33373341	rs7770412	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	33377484	rs437874	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:8,5:34:13:0.385:2	./.	./.	./.	./.	./.	0/1:0,11:32:11:1.00:2	0/1:10,4:31:14:0.286:2	./.	0/1:8,3:32:11:0.273:2	0/1:6,3:30:9:0.333:2
chr6	33382241	rs442745	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:31:11:1.00:2	./.	./.	0/1:0,9:32:9:1.00:2	0/1:15,6:32:21:0.286:2	./.	0/1:11,5:33:16:0.313:2	0/1:9,4:29:13:0.308:2
chr6	33382288	rs3116713	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,5:33:5:1.00:2	0/1:0,4:32:4:1.00:2	./.	0/1:0,10:30:10:1.00:2	./.	./.	./.	0/1:0,9:31:9:1.00:2	./.	0/1:0,8:31:8:1.00:2	0/1:0,5:30:5:1.00:2
chr6	33385953	rs1705003	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:9,9:33:18:0.500:2	0/1:3,7:31:10:0.700:2	./.	./.	./.	./.	./.	0/1:17,18:32:35:0.514:2	./.	0/1:10,14:32:24:0.583:2	./.
chr6	33399778	rs9394145	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,102:31:105:0.971:2	./.	./.	0/1:40,41:31:81:0.506:2	0/1:55,65:30:120:0.542:2	./.	./.	0/1:39,34:31:73:0.466:2
chr6	33406556	rs7759963	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:3,11:32:14:0.786:2	0/1:3,8:32:11:0.727:2	./.	./.	./.	./.	./.	./.	./.	0/1:12,8:30:20:0.400:2	./.
chr6	33408680	rs75579703	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,23:31:56:0.411:2	./.	./.	./.
chr6	33411299	rs61421477	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,7:33:18:0.389:2	./.
chr6	33411642	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,3:31:27:0.111:2	./.	./.
chr6	33412264	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,4:27:65:0.062:2	./.	./.	./.	./.	./.	./.
chr6	33415683	rs139853969	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,7:31:14:0.500:2	0/1:4,11:31:15:0.733:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	33425001	rs114055571	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,34:32:73:0.466:2	0/1:19,24:31:43:0.558:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	33543116	rs561276	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,66:33:150:0.440:2	./.
chr6	33543124	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,6:32:197:0.030:2	./.	./.	./.
chr6	33545340	rs2227925	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,64:29:141:0.457:2	./.	./.	./.
chr6	33560896	rs210162	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:13,20:30:33:0.606:2	0/1:11,8:31:19:0.421:2	./.	./.	0/1:16,8:27:24:0.333:2	./.	0/1:22,10:30:32:0.313:2	./.	0/1:29,14:32:43:0.326:2	./.	0/1:25,9:31:34:0.265:2
chr6	33636829	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,66:31:111:0.595:2	./.	./.	./.	./.	./.
chr6	33636907	rs2077163	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:21,19:31:40:0.475:2	0/1:9,9:31:18:0.500:2	0/1:0,11:31:11:1.00:2	./.	0/1:51,37:30:88:0.420:2	0/1:39,34:30:73:0.466:2	0/1:37,42:30:79:0.532:2	0/1:43,40:30:83:0.482:2	0/1:24,24:30:48:0.500:2	./.	./.
chr6	33638180	rs2229634	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:40,46:30:86:0.535:2	0/1:28,39:30:67:0.582:2	0/1:1,7:30:8:0.875:2	./.	0/1:100,84:30:184:0.457:2	0/1:85,69:31:154:0.448:2	0/1:106,87:30:193:0.451:2	./.	0/1:65,73:30:139:0.529:2	./.	./.
chr6	33641379	rs1803831	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:104,90:30:194:0.464:2	0/1:76,56:30:132:0.424:2	0/1:0,16:29:16:1.00:2	./.	0/1:115,75:30:190:0.395:2	0/1:120,69:30:189:0.365:2	0/1:97,96:31:193:0.497:2	0/1:116,78:30:194:0.402:2	0/1:98,94:31:192:0.490:2	./.	./.
chr6	33643558	rs2229637	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,89:31:185:0.481:2	./.	0/1:80,111:31:191:0.581:2	0/1:73,80:31:154:0.523:2	./.	0/1:36,51:31:88:0.586:2
chr6	33647676	rs9469553	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,36:29:89:0.404:2	./.	./.	./.	./.	./.
chr6	33647853	rs111882381	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,87:32:183:0.475:2	./.
chr6	33647871	rs41271253	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,90:31:173:0.520:2	./.
chr6	33648144	rs11967839	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,25:32:54:0.463:2	./.
chr6	33648228	rs2229638	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,15:31:15:1.00:2	0/1:0,13:31:13:1.00:2	./.	0/1:0,27:31:27:1.00:2	0/1:0,35:31:35:1.00:2	0/1:21,11:31:32:0.344:2	0/1:0,25:31:25:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,17:31:17:1.00:2	0/1:1,23:32:24:0.958:2	0/1:0,33:31:33:1.00:2
chr6	33651129	rs942636	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:10,15:30:25:0.600:2	0/1:12,12:30:24:0.500:2	./.	./.	0/1:17,34:27:51:0.667:2	./.	0/1:25,20:29:45:0.444:2	0/1:28,28:29:56:0.500:2	./.	./.	./.
chr6	33653448	rs749338	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,20:30:55:0.364:2	0/1:14,15:31:29:0.517:2	./.	0/1:36,25:30:61:0.410:2	0/1:0,61:29:61:1.00:2	./.	0/1:0,34:30:34:1.00:2	0/1:36,26:30:62:0.419:2	0/1:0,59:31:59:1.00:2	./.	0/1:0,44:30:44:1.00:2
chr6	33653486	rs12528378	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,88:32:158:0.557:2	./.	./.	./.	./.	./.	./.	./.
chr6	33658780	rs35506178	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,60:32:149:0.403:2	./.
chr6	33659472	rs2229642	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,73:31:164:0.445:2	0/1:73,40:31:113:0.354:2	0/1:0,21:31:21:1.00:2	0/1:105,86:32:191:0.450:2	0/1:1,190:32:191:0.995:2	./.	0/1:0,176:32:176:1.00:2	0/1:116,70:32:186:0.376:2	0/1:0,173:33:173:1.00:2	./.	0/1:0,177:31:177:1.00:2
chr6	33660597	rs2229643	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,31:31:33:0.939:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	33661431	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:31:179:0.022:2	./.	./.	./.
chr6	33690691	rs36101795	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,44:32:71:0.620:2	./.	0/1:40,29:32:70:0.420:2
chr6	33690796	rs4713668	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,13:32:41:0.317:2	0/1:13,13:32:26:0.500:2	./.	0/1:17,26:31:43:0.605:2	0/1:0,19:31:19:1.00:2	./.	0/1:2,33:31:35:0.943:2	0/1:32,25:32:57:0.439:2	0/1:0,47:31:47:1.00:2	./.	0/1:0,61:32:62:1.00:2
chr6	33690797	rs4711341	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,13:33:41:0.317:2	0/1:13,13:33:26:0.500:2	./.	0/1:19,26:33:45:0.578:2	0/1:0,19:32:19:1.00:2	./.	0/1:2,33:32:35:0.943:2	0/1:32,25:33:57:0.439:2	0/1:0,47:32:47:1.00:2	./.	0/1:0,62:32:62:1.00:2
chr6	33695951	rs150896095	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,11:31:21:0.524:2	./.
chr6	33703089	rs623813	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,6:29:16:0.400:2	0/1:57,48:31:105:0.457:2	./.	0/1:59,57:31:116:0.491:2	./.	./.	./.	0/1:31,30:30:61:0.492:2	./.
chr6	33703230	rs545787	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,16:32:29:0.552:2	0/1:4,9:31:13:0.692:2	0/1:0,13:31:13:1.00:2	0/1:19,16:29:35:0.457:2	./.	0/1:0,55:31:55:1.00:2	./.	./.	./.	0/1:25,17:31:42:0.405:2	./.
chr6	33744789	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:33:103:0.039:2	./.	./.	./.	./.	./.
chr6	33762625	rs11758463	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:18,9:28:27:0.333:2	0/1:5,9:28:14:0.643:2	./.	./.	0/1:32,24:30:56:0.429:2	./.	0/1:29,22:30:51:0.431:2	0/1:29,31:30:60:0.517:2	0/1:14,16:29:30:0.533:2	./.	0/1:19,18:29:37:0.486:2
chr6	33768867	rs146896135	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,37:30:93:0.398:2	0/1:33,38:31:71:0.535:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	33768897	rs2281820	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,29:32:74:0.392:2	0/1:36,30:32:66:0.455:2	0/1:14,12:32:26:0.462:2	0/1:58,62:32:120:0.517:2	0/1:90,70:32:160:0.438:2	0/1:83,68:32:151:0.450:2	0/1:82,88:32:170:0.518:2	0/1:107,70:32:177:0.395:2	0/1:82,63:33:145:0.434:2	0/1:61,45:33:106:0.425:2	0/1:62,42:32:104:0.404:2
chr6	33990625	rs45558337	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,71:31:137:0.518:2	./.	./.	./.	./.	./.	./.
chr6	34003685	rs2228623	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:33,34:27:67:0.507:2	0/1:31,16:29:47:0.340:2	./.	./.	./.	./.	0/1:59,43:27:103:0.422:2	./.	0/1:56,38:28:96:0.404:2	./.	0/1:29,27:28:56:0.482:2
chr6	34008006	rs2229900	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:37,37:33:74:0.500:2	0/1:29,18:33:47:0.383:2	./.	0/1:78,48:32:126:0.381:2	0/1:94,66:32:160:0.413:2	./.	0/1:123,56:33:180:0.313:2	./.	0/1:71,62:33:133:0.466:2	./.	0/1:45,50:31:95:0.526:2
chr6	34214322	rs1150781	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,22:29:22:1.00:2	0/1:0,13:27:13:1.00:2	./.	0/1:0,21:27:21:1.00:2	0/1:0,21:25:21:1.00:2	0/1:0,17:28:17:1.00:2	0/1:0,19:26:19:1.00:2	0/1:0,35:28:35:1.00:2	0/1:12,11:26:23:0.478:2	0/1:0,12:30:12:1.00:2	0/1:0,19:27:19:1.00:2
chr6	34214348	rs34410712	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,8:31:34:0.235:2	./.	./.	./.	./.	./.
chr6	34214525	rs141610597	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,20:32:33:0.606:2	0/1:15,21:32:36:0.583:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	34215228	rs1150780	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:0,14:29:14:1.00:2	0/1:6,5:31:11:0.455:2	./.	./.	./.	0/1:7,9:32:16:0.563:2	0/1:0,6:31:6:1.00:2	./.
chr6	34385319	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,4:32:86:0.047:2	./.	./.	./.	./.	./.	./.	./.
chr6	34386219	rs41269040	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,8:31:26:0.308:2	./.	./.	./.	./.	./.	./.	./.
chr6	34499387	rs149949488	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,36:32:71:0.507:2	./.	./.	./.	./.	./.
chr6	34507311	rs2233645	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,36:28:68:0.529:2	./.	./.	./.	./.	0/1:19,25:28:44:0.568:2	./.
chr6	34512064	rs2233639	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,38:31:61:0.623:2	./.	./.	./.	./.	./.
chr6	34512195	rs2233637	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,5:31:19:0.263:2	./.	./.	./.	./.	./.
chr6	34574528	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,10:29:19:0.526:2	./.	./.	./.	./.	./.
chr6	34614412	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:31:120:0.033:2	./.	./.	./.
chr6	34730431	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:32:152:0.026:2	./.	./.	./.	./.	./.
chr6	34730447	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:31:158:0.025:2	./.	./.	./.	./.	./.
chr6	34735743	rs141660326	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,16:29:37:0.432:2
chr6	34803947	rs4259246	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:13,11:32:24:0.458:2	0/1:12,8:32:20:0.400:2	0/1:1,3:32:4:0.750:2	./.	0/1:0,25:30:25:1.00:2	0/1:0,25:33:25:1.00:2	0/1:17,24:32:41:0.585:2	0/1:24,15:31:39:0.385:2	0/1:10,14:33:25:0.583:2	0/1:17,16:33:33:0.485:2	0/1:16,23:32:39:0.590:2
chr6	34824107	rs16894945	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:43,35:32:78:0.449:2	0/1:18,19:32:37:0.514:2	./.	./.	0/1:34,28:32:62:0.452:2	./.	./.	./.	./.	./.	./.
chr6	34824636	rs11755393	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:31,36:31:67:0.537:2	0/1:8,24:29:32:0.750:2	./.	./.	0/1:0,53:30:53:1.00:2	0/1:0,34:30:34:1.00:2	0/1:21,25:30:46:0.543:2	0/1:52,24:29:76:0.316:2	0/1:54,25:31:79:0.316:2	0/1:31,17:31:48:0.354:2	0/1:29,42:31:71:0.592:2
chr6	34825662	rs16894959	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,13:32:36:0.361:2	0/1:0,58:32:58:1.00:2	./.	./.	./.	./.	0/1:39,38:32:77:0.494:2
chr6	34826921	rs61732793	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,42:33:103:0.408:2	./.	./.	0/1:22,17:33:39:0.436:2	./.
chr6	34827085	rs9469913	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,51:31:84:0.607:2	0/1:0,48:31:48:1.00:2	./.	./.	./.	./.	0/1:27,24:31:51:0.471:2
chr6	34831856	rs13205210	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,7:31:18:0.389:2	./.	./.	./.	0/1:95,66:31:161:0.410:2	0/1:74,65:30:139:0.468:2	0/1:53,39:31:92:0.424:2	0/1:46,30:30:76:0.395:2	./.
chr6	34831866	rs3734264	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:47,42:33:89:0.472:2	0/1:26,22:33:48:0.458:2	0/1:12,7:32:19:0.368:2	./.	0/1:0,97:33:97:1.00:2	0/1:1,81:32:82:0.988:2	0/1:97,73:33:170:0.429:2	0/1:85,82:32:167:0.491:2	0/1:61,50:32:111:0.450:2	0/1:54,32:33:86:0.372:2	0/1:53,49:32:102:0.480:2
chr6	34839463	rs147415559	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:72,63:30:135:0.467:2	0/1:38,55:30:93:0.591:2	./.	./.	./.	./.	./.	0/1:99,71:30:170:0.418:2	./.	./.	./.
chr6	34850826	rs15922	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:34:7:0.571:2	./.	./.	./.	./.	0/1:41,16:32:58:0.281:2	./.	./.	./.
chr6	34949607	rs2293242	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,54:31:95:0.568:2	0/1:35,23:31:58:0.397:2	0/1:8,8:30:16:0.500:2	0/1:69,48:31:117:0.410:2	0/1:90,70:31:160:0.438:2	0/1:77,36:30:113:0.319:2	0/1:93,58:31:151:0.384:2	0/1:3,140:31:143:0.979:2	0/1:0,117:32:117:1.00:2	0/1:48,43:32:91:0.473:2	0/1:0,76:31:77:1.00:2
chr6	35027927	rs820085	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,148:32:149:1.00:2	0/1:0,117:32:117:1.00:2	0/1:0,32:32:32:1.00:2	0/1:1,185:32:186:0.995:2	0/1:0,184:32:184:1.00:2	0/1:1,186:32:187:0.995:2	0/1:0,182:32:182:1.00:2	0/1:0,186:33:186:1.00:2	0/1:1,188:33:189:0.995:2	0/1:0,194:33:194:1.00:2	0/1:0,176:32:176:1.00:2
chr6	35048828	rs148742939	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,4:32:99:0.040:2	./.	./.	./.	./.	./.	./.
chr6	35050506	rs2177382	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,32:31:32:1.00:2	./.	0/1:27,28:30:55:0.509:2	0/1:0,62:30:62:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,52:31:52:1.00:2	0/1:33,34:32:67:0.507:2	0/1:36,28:31:64:0.438:2	0/1:0,51:31:51:1.00:2	0/1:0,57:31:57:1.00:2
chr6	35050593	rs34422534	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,18:28:45:0.400:2	./.	./.
chr6	35088381	rs2234045	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,9:34:21:0.429:2	0/1:105,81:32:186:0.435:2	./.	./.	./.	0/1:91,103:32:194:0.531:2	0/1:91,98:33:189:0.519:2	./.	./.
chr6	35088777	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:149,4:31:153:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr6	35090097	rs2234044	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,3:33:19:0.158:2	0/1:98,87:33:185:0.470:2	./.	./.	./.	0/1:102,69:32:171:0.404:2	0/1:106,56:33:162:0.346:2	./.	./.
chr6	35107774	rs34103100	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,3:31:10:0.300:2	0/1:12,9:32:21:0.429:2	./.	./.	./.	0/1:17,11:29:28:0.393:2	0/1:23,22:32:45:0.489:2	./.	./.
chr6	35107781	rs34715060	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,4:32:11:0.364:2	0/1:17,10:32:27:0.370:2	./.	./.	./.	0/1:20,16:32:36:0.444:2	0/1:25,28:33:53:0.528:2	./.	./.
chr6	35108553	rs35693439	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,17:31:35:0.486:2	./.	./.	./.	0/1:13,18:32:31:0.581:2	0/1:16,12:33:28:0.429:2	./.	./.
chr6	35200741	rs35837363	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,6:34:62:0.097:2	./.	./.
chr6	35208963	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:31:65:0.062:2	./.	./.	./.
chr6	35248957	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,33:30:89:0.371:2	./.	./.	./.	./.	./.
chr6	35253974	rs2228265	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,33:30:67:0.493:2	./.	./.	./.	./.	./.
chr6	35260503	rs1557567	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:31:49:1.00:2	0/1:1,39:32:40:0.975:2	0/1:0,7:30:7:1.00:2	0/1:34,35:30:69:0.507:2	0/1:40,53:31:93:0.570:2	0/1:37,32:31:69:0.464:2	0/1:35,42:31:77:0.545:2	0/1:0,87:31:88:1.00:2	0/1:25,29:32:54:0.537:2	0/1:1,51:31:52:0.981:2	0/1:0,57:32:57:1.00:2
chr6	35260530	rs1557568	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:31:37:1.00:2	0/1:1,27:31:28:0.964:2	0/1:0,5:31:5:1.00:2	0/1:21,33:30:54:0.611:2	0/1:14,29:31:43:0.674:2	0/1:31,20:29:51:0.392:2	0/1:19,27:30:46:0.587:2	0/1:1,54:30:56:0.982:2	0/1:17,21:32:38:0.553:2	0/1:0,33:32:33:1.00:2	0/1:1,42:31:43:0.977:2
chr6	35260533	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,10:32:38:0.263:2	0/1:20,8:30:28:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	35260700	rs35582935	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,42:33:73:0.575:2	./.	./.
chr6	35262974	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:33:43:0.093:2	./.
chr6	35265711	rs16874262	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,19:31:42:0.452:2	./.	./.	./.	./.	./.
chr6	35285720	rs2395617	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:31:89:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,11:32:11:1.00:2	0/1:81,59:32:140:0.421:2	0/1:115,79:32:194:0.407:2	0/1:0,119:31:119:1.00:2	0/1:0,172:32:172:1.00:2	0/1:0,150:32:150:1.00:2	0/1:55,45:33:100:0.450:2	0/1:0,92:32:92:1.00:2	0/1:0,80:31:80:1.00:2
chr6	35387995	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:31:140:0.029:2	./.	./.	./.	./.
chr6	35391787	rs2076167	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:29:43:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,9:31:9:1.00:2	0/1:30,28:30:59:0.483:2	0/1:47,25:30:72:0.347:2	0/1:27,27:30:54:0.500:2	0/1:61,49:30:110:0.445:2	0/1:48,53:31:101:0.525:2	0/1:35,29:31:64:0.453:2	0/1:30,36:30:66:0.545:2	0/1:0,66:31:66:1.00:2
chr6	35393799	rs201745143	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,45:31:90:0.500:2	./.	./.	./.
chr6	35423662	rs4713867	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,42:29:43:0.977:2	0/1:1,12:28:13:0.923:2	./.	0/1:1,40:28:41:0.976:2	0/1:1,55:29:56:0.982:2	0/1:0,40:29:40:1.00:2	0/1:0,42:29:42:1.00:2	0/1:31,11:29:42:0.262:2	0/1:1,33:29:34:0.971:2	./.	0/1:0,36:28:36:1.00:2
chr6	35426175	rs3823434	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,43:30:108:0.398:2	./.	./.	./.	./.	./.	./.
chr6	35436195	rs41271257	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,63:30:144:0.438:2	./.	./.	./.	./.
chr6	35443835	rs35080860	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,28:31:69:0.406:2	./.	./.	./.	./.
chr6	35446225	rs144697750	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,34:31:69:0.493:2
chr6	35447913	rs4711417	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,15:33:31:0.484:2	./.	./.	./.	./.	./.	./.	./.
chr6	35452346	rs11756089	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,53:31:129:0.411:2	0/1:51,74:32:125:0.592:2	./.	./.	./.	./.
chr6	35467891	rs41270076	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,51:31:128:0.398:2	./.	0/1:81,60:31:141:0.426:2	./.	./.	./.	./.
chr6	35474073	rs12215920	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,37:33:90:0.411:2	./.	./.	./.	0/1:56,49:32:105:0.467:2	0/1:62,43:34:105:0.410:2	0/1:36,41:32:77:0.532:2	0/1:0,72:32:72:1.00:2
chr6	35477025	rs2064318	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,108:32:108:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,26:33:26:1.00:2	0/1:97,84:32:181:0.464:2	0/1:0,155:32:155:1.00:2	0/1:0,163:32:163:1.00:2	0/1:107,55:33:162:0.340:2	0/1:0,132:31:132:1.00:2	0/1:109,49:33:158:0.310:2	0/1:2,110:33:112:0.982:2	0/1:0,136:32:136:1.00:2
chr6	35477032	rs2064317	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:66,41:32:107:0.383:2	0/1:41,23:33:64:0.359:2	./.	./.	./.	./.	./.	0/1:75,57:31:132:0.432:2	0/1:104,49:34:153:0.320:2	0/1:68,45:31:114:0.398:2	0/1:0,136:32:137:1.00:2
chr6	35477424	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:33:80:0.050:2	./.	./.
chr6	35479574	rs7764472	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,6:33:6:1.00:2	0/1:0,2:32:2:1.00:2	./.	0/1:2,5:29:7:0.714:2	0/1:0,2:32:2:1.00:2	0/1:0,6:33:6:1.00:2	./.	0/1:0,4:32:4:1.00:2	0/1:1,2:35:3:0.667:2	0/1:0,5:32:5:1.00:2	./.
chr6	35705892	rs2817041	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:27:24:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,46:29:46:1.00:2	0/1:0,32:29:32:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,60:29:60:1.00:2	0/1:0,30:30:30:1.00:2	0/1:18,12:28:30:0.400:2	0/1:0,21:28:21:1.00:2
chr6	35715076	rs35066231	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:34:138:0.029:2	./.	./.
chr6	35745655	rs2478467	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,99:32:100:0.990:2	0/1:1,40:32:41:0.976:2	0/1:0,13:30:13:1.00:2	0/1:66,73:32:139:0.525:2	0/1:76,39:32:115:0.339:2	0/1:67,74:31:141:0.525:2	0/1:98,74:32:172:0.430:2	0/1:90,51:33:141:0.362:2	0/1:0,137:33:137:1.00:2	0/1:54,44:32:98:0.449:2	0/1:54,61:32:115:0.530:2
chr6	35748931	rs34109614	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:61,47:32:108:0.435:2	0/1:33,31:32:64:0.484:2	./.	./.	./.	./.	./.	0/1:70,85:32:155:0.548:2	./.	./.	0/1:106,75:32:181:0.414:2
chr6	35748947	rs187830491	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,44:28:112:0.393:2	./.	./.	./.	./.	./.	./.
chr6	35755658	rs12211728	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,43:33:61:0.705:2	0/1:15,22:33:37:0.595:2	0/1:3,4:32:7:0.571:2	0/1:36,27:32:63:0.429:2	0/1:20,39:32:59:0.661:2	./.	0/1:36,15:30:51:0.294:2	0/1:28,21:33:49:0.429:2	0/1:1,67:34:68:0.985:2	0/1:44,24:32:68:0.353:2	0/1:64,23:32:87:0.264:2
chr6	35761336	rs6457853	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:37,17:29:54:0.315:2	0/1:25,8:28:33:0.242:2	./.	./.	0/1:114,41:29:155:0.265:2	0/1:27,29:30:56:0.518:2	0/1:77,50:30:127:0.394:2	./.	0/1:54,33:30:87:0.379:2	0/1:36,8:31:44:0.182:2	0/1:41,15:27:56:0.268:2
chr6	35765068	rs3748050	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,27:30:41:0.659:2	0/1:11,20:28:31:0.645:2	./.	./.	0/1:45,47:30:92:0.511:2	0/1:35,29:30:64:0.453:2	0/1:22,29:30:51:0.569:2	./.	0/1:21,53:30:74:0.716:2	0/1:31,14:29:45:0.311:2	0/1:14,37:29:51:0.725:2
chr6	35803192	rs1049649	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,56:33:58:0.982:2	0/1:0,40:32:40:1.00:2	./.	0/1:31,35:32:66:0.530:2	0/1:29,17:32:46:0.370:2	0/1:47,30:31:77:0.390:2	0/1:36,28:32:64:0.438:2	0/1:30,26:33:56:0.464:2	0/1:0,59:33:59:1.00:2	0/1:28,17:32:45:0.378:2	0/1:44,20:33:64:0.313:2
chr6	35923059	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:195,4:32:199:0.020:2	./.	./.	./.	./.	./.	./.
chr6	35923246	rs2295852	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,10:27:21:0.476:2	./.	./.	0/1:59,57:28:116:0.491:2	0/1:124,4:30:128:0.031:2	./.	./.	./.	./.
chr6	35960390	rs17707331	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	0/1:13,14:30:27:0.519:2	0/1:26,33:31:59:0.559:2	./.	./.	./.	./.
chr6	35967772	rs17713154	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:32:11:0.273:2	./.	./.	0/1:33,15:31:48:0.313:2	0/1:32,18:30:50:0.360:2	./.	./.	./.	./.
chr6	35980121	rs743923	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:32:11:0.636:2	./.	./.	0/1:30,32:32:62:0.516:2	0/1:55,23:31:78:0.295:2	./.	./.	./.	./.
chr6	36027142	rs3730327	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,20:29:30:0.667:2	0/1:25,21:29:46:0.457:2	./.	./.	./.	./.	0/1:20,27:29:47:0.574:2
chr6	36041431	rs851010	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:33:70:1.00:2	0/1:2,58:32:60:0.967:2	0/1:4,5:33:9:0.556:2	0/1:1,89:33:90:0.989:2	0/1:21,20:32:41:0.488:2	0/1:45,33:32:78:0.423:2	0/1:20,23:32:43:0.535:2	0/1:1,53:32:54:0.981:2	0/1:0,72:34:72:1.00:2	0/1:0,68:33:68:1.00:2	0/1:48,53:33:101:0.525:2
chr6	36075237	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:29:87:0.046:2	./.	./.	./.	./.
chr6	36076169	rs45496794	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,91:31:198:0.460:2	./.	./.	./.	./.	./.
chr6	36098410	rs1059227	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,15:30:15:1.00:2	0/1:74,49:30:123:0.398:2	0/1:74,59:29:133:0.444:2	0/1:63,46:30:109:0.422:2	0/1:57,24:30:81:0.296:2	0/1:63,55:29:118:0.466:2	0/1:35,33:29:68:0.485:2	./.	0/1:36,36:29:72:0.500:2
chr6	36168628	rs45504893	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:63,61:29:124:0.492:2	0/1:40,33:28:73:0.452:2	./.	0/1:98,88:29:186:0.473:2	0/1:107,90:29:197:0.457:2	0/1:90,102:29:192:0.531:2	./.	0/1:95,100:29:195:0.513:2	0/1:110,84:30:194:0.433:2	0/1:76,84:29:160:0.525:2	./.
chr6	36169062	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:33:71:0.056:2	./.	./.	./.	./.
chr6	36169232	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:30:105:0.038:2	./.	./.	./.	./.
chr6	36260858	rs2239795	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:36,15:31:51:0.294:2	0/1:11,13:31:24:0.542:2	0/1:1,4:32:5:0.800:2	./.	0/1:45,30:31:75:0.400:2	0/1:31,36:31:67:0.537:2	./.	0/1:41,49:31:90:0.544:2	./.	./.	./.
chr6	36260914	rs2239796	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,31:32:70:0.443:2	0/1:54,52:32:106:0.491:2	0/1:37,25:31:62:0.403:2	./.	0/1:26,16:32:42:0.381:2
chr6	36263171	rs45524833	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,50:31:102:0.490:2	./.	./.	./.	./.	./.
chr6	36270130	rs12199580	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,60:31:96:0.632:2	./.	0/1:43,47:30:90:0.522:2	0/1:33,36:31:69:0.522:2	0/1:52,42:32:94:0.447:2	0/1:26,26:32:52:0.500:2	0/1:0,45:31:45:1.00:2
chr6	36274153	rs12197079	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:40,30:32:70:0.429:2	0/1:36,20:30:56:0.357:2	./.	0/1:41,63:31:104:0.606:2	./.	0/1:1,87:31:88:0.989:2	./.	0/1:62,50:32:112:0.446:2	./.	./.	0/1:62,44:32:106:0.415:2
chr6	36275458	rs4713956	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:32:86:1.00:2	0/1:2,43:33:45:0.956:2	0/1:10,13:33:23:0.565:2	0/1:75,45:33:120:0.375:2	0/1:43,31:32:74:0.419:2	0/1:2,85:32:87:0.977:2	0/1:63,26:33:89:0.292:2	0/1:55,35:33:90:0.389:2	0/1:67,52:33:119:0.437:2	0/1:39,23:32:62:0.371:2	0/1:65,52:32:117:0.444:2
chr6	36287312	rs743852	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,49:29:51:0.961:2	0/1:0,31:28:31:1.00:2	0/1:5,3:30:8:0.375:2	./.	0/1:23,21:27:44:0.477:2	0/1:0,45:28:45:1.00:2	0/1:35,28:26:63:0.444:2	0/1:0,58:28:58:1.00:2	./.	./.	0/1:28,27:29:55:0.491:2
chr6	36291985	rs7751919	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:31,13:31:44:0.295:2	0/1:17,7:32:24:0.292:2	./.	./.	./.	./.	./.	0/1:37,28:32:68:0.431:2	./.	./.	./.
chr6	36293083	rs76331220	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,33:33:62:0.532:2	./.	./.	./.
chr6	36294864	rs41270098	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,37:32:81:0.457:2	./.	./.	./.	./.	0/1:35,41:33:76:0.539:2
chr6	36341294	rs3213530	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,15:31:43:0.357:2	0/1:14,10:31:24:0.417:2	./.	./.	./.	0/1:44,43:30:87:0.494:2	./.	./.	./.	0/1:34,30:30:65:0.469:2	./.
chr6	36343721	rs2234075	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,26:30:54:0.481:2	./.	./.	0/1:23,23:32:46:0.500:2	./.
chr6	36446975	rs2239808	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,77:33:187:0.414:2	./.	0/1:1,180:32:181:0.994:2	0/1:120,65:33:185:0.351:2	./.	0/1:99,91:34:190:0.479:2	./.	./.
chr6	36463595	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:159,4:32:163:0.025:2	./.	./.	./.	./.	./.	./.
chr6	36489585	rs200294413	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,10:15:56:0.179:2
chr6	36564560	rs369334022	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:29:77:0.052:2	./.	./.	./.	0/1:82,6:28:88:0.068:2	./.
chr6	36564569	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:31:81:0.049:2	./.	./.	./.	0/1:85,6:32:91:0.066:2	./.
chr6	36564611	rs149706646	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:31:76:0.053:2	./.
chr6	36569712	rs200982032	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,14:26:56:0.250:2	./.	./.	0/1:47,10:15:57:0.175:2	0/1:44,9:18:53:0.170:2	0/1:54,20:18:74:0.270:2	0/1:37,7:17:45:0.159:2	0/1:49,15:16:64:0.234:2	0/1:49,13:20:62:0.210:2	./.	0/1:73,12:27:85:0.141:2
chr6	36569717	rs371153754	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,15:24:54:0.278:2	./.	./.	0/1:39,11:23:50:0.220:2	0/1:42,11:20:53:0.208:2	0/1:51,17:19:68:0.250:2	0/1:39,11:19:50:0.220:2	0/1:42,15:18:57:0.263:2	0/1:46,14:20:60:0.233:2	0/1:35,8:20:43:0.186:2	0/1:60,17:25:77:0.221:2
chr6	36651971	rs1801270	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,21:29:35:0.600:2	./.	./.	./.	./.	./.
chr6	36653597	rs1059234	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,7:30:19:0.368:2	./.	./.	./.	./.	./.
chr6	36713263	rs763046	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:29:61:1.00:2	0/1:0,46:29:46:1.00:2	0/1:12,12:29:24:0.500:2	0/1:0,138:29:138:1.00:2	0/1:0,169:29:169:1.00:2	0/1:0,136:29:137:1.00:2	0/1:0,169:29:170:1.00:2	0/1:0,163:29:163:1.00:2	0/1:0,107:30:107:1.00:2	0/1:0,85:29:85:1.00:2	0/1:0,71:29:71:1.00:2
chr6	36733132	rs763048	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:62,51:31:113:0.451:2	0/1:33,30:31:63:0.476:2	./.	0/1:2,148:30:150:0.987:2	0/1:0,180:31:180:1.00:2	0/1:1,158:31:159:0.994:2	0/1:3,172:31:175:0.983:2	0/1:104,78:31:182:0.429:2	0/1:1,155:32:156:0.994:2	0/1:71,46:31:117:0.393:2	0/1:0,97:31:97:1.00:2
chr6	36766292	rs6940728	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,5:31:5:1.00:2	0/1:27,33:32:60:0.550:2	0/1:42,25:32:67:0.373:2	0/1:33,20:31:53:0.377:2	0/1:1,47:32:48:0.979:2	0/1:38,36:32:74:0.486:2	0/1:30,30:33:60:0.500:2	0/1:12,19:32:31:0.613:2	./.
chr6	36824399	rs2071823	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,87:31:91:0.956:2	./.	./.	./.	./.	./.
chr6	36853834	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:22:3:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr6	36882353	rs2272275	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,4:34:15:0.267:2	./.	./.	./.	0/1:56,38:33:94:0.404:2	0/1:53,58:32:111:0.523:2	0/1:58,71:33:129:0.550:2	./.	./.
chr6	36887476	rs11542163	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:31:8:0.750:2	./.	./.	./.	./.	./.	0/1:40,34:33:74:0.459:2	./.	./.
chr6	36891344	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:30:71:0.056:2	./.	./.	./.	./.	./.
chr6	36922684	rs1405069	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,20:33:20:1.00:2	0/1:0,18:32:18:1.00:2	./.	./.	0/1:0,40:31:40:1.00:2	0/1:19,31:32:50:0.620:2	0/1:0,67:32:67:1.00:2	0/1:22,25:34:47:0.532:2	0/1:30,19:32:49:0.388:2	./.	0/1:19,28:32:47:0.596:2
chr6	36926935	rs193058438	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:32:40:0.100:2	./.	./.
chr6	36929674	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,4:32:94:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr6	36930814	rs41272198	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,36:32:67:0.537:2	./.	0/1:47,40:31:87:0.460:2	./.	./.	./.	0/1:48,21:32:70:0.304:2	./.
chr6	36931162	rs2296934	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,26:33:26:1.00:2	./.	0/1:26,38:31:64:0.594:2	0/1:1,50:31:51:0.980:2	0/1:1,47:31:48:0.979:2	0/1:1,47:32:48:0.979:2	0/1:30,24:32:56:0.444:2	0/1:34,35:33:69:0.507:2	0/1:36,23:31:59:0.390:2	0/1:28,21:31:50:0.429:2
chr6	36931245	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:133,4:36:137:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr6	36931300	rs114176275	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:33:12:0.583:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	36936640	rs1042987	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,86:32:188:0.457:2	./.	./.	./.	./.	./.
chr6	36943513	rs2293385	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,13:33:33:0.394:2	0/1:30,18:31:48:0.375:2	./.	./.	0/1:38,27:32:65:0.415:2	0/1:16,9:33:25:0.360:2	0/1:22,16:32:38:0.421:2	0/1:35,20:32:55:0.364:2
chr6	36945393	rs76406709	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,45:27:78:0.577:2	./.	./.	./.	./.	./.	0/1:27,19:29:46:0.413:2	./.
chr6	36945938	rs201879830	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,39:30:90:0.433:2	./.	./.	./.	./.	./.	0/1:35,40:31:75:0.533:2	./.
chr6	36976637	rs831510	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:57,33:32:90:0.367:2	0/1:25,28:32:53:0.528:2	./.	./.	0/1:75,55:31:130:0.423:2	0/1:0,127:32:127:1.00:2	0/1:64,56:32:120:0.467:2	0/1:97,53:32:150:0.353:2	0/1:56,73:33:129:0.566:2	0/1:64,43:32:107:0.402:2	./.
chr6	36978745	rs1724088	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,22:32:43:0.512:2	0/1:12,11:32:23:0.478:2	./.	./.	0/1:48,29:32:77:0.377:2	0/1:0,65:31:66:1.00:2	0/1:0,67:31:67:1.00:2	0/1:45,43:31:88:0.489:2	0/1:48,22:32:70:0.314:2	0/1:26,21:32:47:0.447:2	./.
chr6	36978834	rs1753288	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,14:33:30:0.467:2	0/1:11,8:32:19:0.421:2	./.	0/1:52,11:33:63:0.175:2	0/1:29,22:32:51:0.431:2	0/1:0,39:30:39:1.00:2	0/1:0,37:31:37:1.00:2	0/1:59,24:29:83:0.289:2	0/1:23,18:31:41:0.439:2	0/1:30,14:30:44:0.318:2	./.
chr6	36979483	.	T	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:28,13:13:41:0.317:2	./.	0/1:82,17:10:99:0.172:2	./.	0/1:99,20:10:119:0.168:2	0/1:108,29:9:138:0.212:2	./.	./.	./.	./.
chr6	36979583	rs12202642	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,57:31:122:0.467:2	./.	./.	./.
chr6	36988364	rs831504	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,64:32:65:0.985:2	0/1:0,28:32:28:1.00:2	0/1:8,5:31:13:0.385:2	0/1:20,30:32:50:0.600:2	./.	./.	0/1:40,31:32:71:0.437:2	0/1:0,84:32:84:1.00:2	0/1:29,23:33:52:0.442:2	0/1:0,47:32:47:1.00:2	./.
chr6	36995222	rs2274587	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,57:31:136:0.419:2	./.	./.	./.	./.	./.	./.
chr6	37012780	rs41272212	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,40:33:66:0.615:2	0/1:27,22:32:50:0.449:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	37013127	rs2692879	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,14:32:39:0.359:2	0/1:21,11:32:32:0.344:2	0/1:3,3:30:6:0.500:2	0/1:31,21:33:52:0.404:2	0/1:38,5:32:43:0.116:2	./.	0/1:40,14:32:54:0.259:2	0/1:0,30:32:30:1.00:2	0/1:34,14:33:48:0.292:2	0/1:0,28:33:28:1.00:2	./.
chr6	37250112	rs195753	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,4:34:4:1.00:2	0/1:0,2:32:2:1.00:2	./.	0/1:0,7:29:7:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,6:34:6:1.00:2	0/1:0,6:32:6:1.00:2	0/1:3,3:33:6:0.500:2	0/1:0,8:31:8:1.00:2	0/1:0,6:34:6:1.00:2
chr6	37250660	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,5:27:149:0.034:2	./.	./.
chr6	37252210	rs3818136	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:31:29:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,42:31:42:1.00:2	0/1:25,23:32:48:0.479:2	0/1:0,42:31:42:1.00:2	0/1:0,41:32:41:1.00:2	0/1:1,51:32:52:0.981:2	0/1:40,23:32:63:0.365:2	0/1:19,14:32:33:0.424:2	./.
chr6	37281667	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:32:143:0.028:2
chr6	37349033	rs2284922	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,35:32:81:0.432:2	0/1:26,32:32:58:0.552:2	0/1:0,10:31:10:1.00:2	0/1:0,108:31:108:1.00:2	0/1:48,36:31:84:0.429:2	0/1:87,56:31:143:0.392:2	0/1:3,87:31:90:0.967:2	0/1:75,49:30:124:0.395:2	0/1:0,107:32:107:1.00:2	./.	./.
chr6	37349066	rs34150698	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,29:31:65:0.446:2	./.	./.	./.	./.	0/1:43,39:32:82:0.476:2	0/1:86,50:32:136:0.368:2
chr6	37411793	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:30:29:0.138:2	./.
chr6	37414119	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:34:117:0.034:2	./.	./.
chr6	37419619	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,5:31:66:0.076:2	./.	./.	./.
chr6	37429324	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:33:135:0.030:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	37443950	rs9462313	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,20:29:54:0.370:2	./.	./.	./.	./.	./.	./.	./.
chr6	37446185	rs142246031	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,39:32:74:0.527:2	./.	./.	./.	./.	./.	./.	./.
chr6	37446260	rs141342023	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,39:30:91:0.429:2	./.	./.	./.	./.	./.	./.	./.
chr6	37450914	rs10692	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:97,87:31:184:0.473:2	0/1:86,68:31:154:0.442:2	0/1:12,15:31:27:0.556:2	0/1:0,182:32:182:1.00:2	0/1:4,182:32:186:0.978:2	0/1:1,174:32:175:0.994:2	./.	0/1:103,90:33:193:0.466:2	0/1:100,95:32:195:0.487:2	0/1:0,182:31:182:1.00:2	0/1:0,174:31:174:1.00:2
chr6	37451045	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,98:32:197:0.497:2	./.	./.	./.
chr6	37612420	rs201326358	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,8:17:87:0.092:2	./.
chr6	37619830	rs62398393	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,14:31:39:0.359:2	./.	./.	./.	./.	./.
chr6	37623566	rs3846874	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,25:31:72:0.352:2	0/1:29,24:30:53:0.453:2	0/1:8,5:28:14:0.385:2	0/1:91,53:29:144:0.368:2	0/1:47,51:29:98:0.520:2	0/1:61,73:29:134:0.545:2	0/1:0,112:29:113:1.00:2	0/1:63,73:30:136:0.537:2	./.	./.	0/1:2,79:29:84:0.975:2
chr6	37623626	rs13204070	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	0/1:69,59:30:128:0.461:2	./.	./.	./.	0/1:1,98:30:99:0.990:2	0/1:0,54:31:55:1.00:2	./.
chr6	37626142	rs2273110	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,50:32:101:0.495:2	./.	./.	./.	0/1:4,47:32:51:0.922:2	0/1:2,36:33:38:0.947:2	./.
chr6	37631768	rs10947690	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,83:32:85:0.976:2
chr6	38110010	rs12662543	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,67:32:165:0.406:2	./.	./.	./.	./.	./.
chr6	38650588	rs1130534	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:31,19:30:50:0.380:2	0/1:17,13:31:30:0.433:2	./.	./.	0/1:40,42:30:82:0.512:2	./.	0/1:21,33:30:54:0.611:2	0/1:36,47:31:83:0.566:2	./.	./.	./.
chr6	38650628	rs4746	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,40:29:80:0.500:2	0/1:20,20:29:40:0.500:2	0/1:0,18:30:18:1.00:2	0/1:47,49:29:96:0.510:2	0/1:53,63:29:116:0.543:2	0/1:51,51:30:102:0.500:2	0/1:54,26:30:80:0.325:2	./.	0/1:0,132:30:132:1.00:2	0/1:59,54:29:113:0.478:2	0/1:54,75:29:129:0.581:2
chr6	38670837	rs1049346	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:13,26:31:39:0.667:2	0/1:2,8:31:10:0.800:2	0/1:6,3:31:9:0.333:2	./.	0/1:0,69:30:69:1.00:2	0/1:23,27:30:50:0.540:2	0/1:17,25:31:42:0.595:2	0/1:28,26:30:54:0.481:2	0/1:0,54:31:54:1.00:2	0/1:21,12:30:33:0.364:2	0/1:11,17:30:29:0.607:2
chr6	38702384	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.	./.
chr6	38704943	rs6935293	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,16:33:41:0.390:2	./.	./.	./.	./.
chr6	38729511	rs61748600	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,62:33:125:0.496:2	0/1:25,24:32:49:0.490:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	38746176	rs61748601	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,18:32:37:0.500:2	0/1:14,4:31:18:0.222:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	38747770	rs1738254	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,53:32:53:1.00:2	./.	./.	./.	./.
chr6	38750812	rs1678664	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,44:32:45:0.978:2	./.	./.	./.	./.
chr6	38750888	rs3823430	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:28,34:33:62:0.548:2	0/1:29,23:32:52:0.442:2	0/1:7,9:33:16:0.563:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	38757615	rs45529837	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,73:32:109:0.670:2	./.
chr6	38759379	rs1678674	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,134:32:137:0.978:2	0/1:193,6:31:199:0.030:2	./.	./.	./.
chr6	38773293	rs874808	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:32:54:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,5:31:5:1.00:2	0/1:50,22:31:72:0.306:2	./.	./.	0/1:0,38:31:38:1.00:2	./.	./.	./.	./.
chr6	38781866	rs1678690	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:30:86:1.00:2	0/1:0,58:29:58:1.00:2	0/1:0,18:29:18:1.00:2	0/1:61,53:30:114:0.465:2	./.	./.	0/1:0,80:29:80:1.00:2	./.	./.	./.	./.
chr6	38800164	rs9357283	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,28:32:89:0.315:2	0/1:36,26:32:62:0.419:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	38800209	rs1678729	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:32:5:0.800:2	0/1:38,25:33:63:0.397:2	./.	./.	0/1:2,36:33:38:0.947:2	./.	./.	./.	./.
chr6	38816574	rs1678744	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,17:32:44:0.386:2	./.	./.	./.	./.	./.	./.	./.
chr6	38820544	rs1678746	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,39:32:112:0.348:2	./.	./.	./.	./.	./.	./.	./.
chr6	38825314	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:32:74:0.054:2	./.	./.	./.	./.
chr6	38825329	rs2061907	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,104:32:104:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,16:32:16:1.00:2	./.	./.	./.	0/1:1,78:32:79:0.987:2	./.	./.	./.	./.
chr6	38838314	rs149125241	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,12:31:27:0.444:2	./.	./.	./.
chr6	38841101	rs9380795	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,82:32:82:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,7:31:7:1.00:2	./.	./.	./.	0/1:1,66:32:67:0.985:2	./.	./.	0/1:83,4:32:87:0.046:2	./.
chr6	38843426	rs6458080	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,55:32:55:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.	./.	0/1:0,39:31:39:1.00:2	./.	./.	./.	./.
chr6	38850809	rs862432	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,38:32:95:0.400:2	./.	./.	./.	./.	./.	./.	./.
chr6	38851669	rs4714192	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:22,25:32:47:0.532:2	0/1:19,12:32:31:0.387:2	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	38863890	rs376667759	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:33:186:0.022:2	./.	./.
chr6	38875752	rs4452640	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,49:33:49:1.00:2	./.	./.	./.	./.
chr6	38919109	rs61748647	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,55:32:120:0.458:2
chr6	38951998	rs1537232	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,28:32:62:0.452:2	0/1:26,13:32:39:0.333:2	./.	./.	./.	0/1:45,34:32:79:0.430:2	0/1:0,58:32:58:1.00:2	0/1:59,39:32:98:0.398:2	./.	./.	./.
chr6	38957853	rs3737094	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,36:33:87:0.414:2	0/1:17,22:33:39:0.564:2	./.	0/1:41,42:33:83:0.506:2	0/1:36,26:32:62:0.419:2	./.	./.	0/1:45,42:33:87:0.483:2	0/1:69,27:33:96:0.281:2	0/1:36,19:33:55:0.345:2	0/1:42,48:33:91:0.533:2
chr6	38980000	rs143714496	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,23:31:41:0.561:2	0/1:11,15:32:26:0.577:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	38980081	rs10484847	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,29:32:55:0.527:2	0/1:43,34:32:77:0.442:2	./.	./.	0/1:43,50:33:93:0.538:2	0/1:34,45:33:79:0.570:2	./.
chr6	38998103	rs146551804	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,39:32:119:0.328:2	./.	./.	./.
chr6	39033593	rs3765468	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,28:30:62:0.452:2	0/1:40,32:31:72:0.444:2	./.	./.	./.
chr6	39033602	rs6918287	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:0,46:32:47:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,84:31:84:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,60:33:60:1.00:2	0/1:18,16:32:34:0.471:2	0/1:0,65:33:65:1.00:2
chr6	39034072	rs6923761	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,23:33:49:0.469:2	0/1:18,11:32:29:0.379:2	./.	0/1:37,31:31:68:0.456:2	0/1:44,36:32:80:0.450:2	0/1:24,24:32:48:0.500:2	0/1:38,32:33:70:0.457:2	0/1:54,25:32:79:0.316:2	0/1:15,40:34:55:0.727:2	0/1:27,31:32:58:0.534:2	./.
chr6	39040654	rs2235868	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,46:30:97:0.474:2	0/1:26,22:29:48:0.458:2	./.	0/1:63,64:30:127:0.504:2	0/1:93,77:30:170:0.453:2	0/1:0,112:29:113:1.00:2	0/1:3,135:30:138:0.978:2	0/1:2,175:30:178:0.989:2	0/1:1,130:30:131:0.992:2	0/1:64,52:30:116:0.448:2	0/1:60,51:30:111:0.459:2
chr6	39041502	rs1042044	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:78,56:34:134:0.418:2	0/1:44,31:33:75:0.413:2	./.	0/1:85,68:33:153:0.444:2	0/1:105,52:33:158:0.331:2	0/1:0,145:33:145:1.00:2	0/1:5,155:33:160:0.969:2	0/1:0,138:33:138:1.00:2	0/1:2,127:34:129:0.984:2	0/1:95,40:32:135:0.296:2	0/1:98,65:34:163:0.399:2
chr6	39046794	rs10305492	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,43:29:113:0.381:2	./.
chr6	39048491	rs1126476	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:68,68:33:136:0.500:2	0/1:35,43:33:78:0.551:2	./.	0/1:1,176:33:177:0.994:2	0/1:90,82:32:172:0.477:2	0/1:83,82:32:165:0.497:2	0/1:3,171:33:174:0.983:2	0/1:4,159:33:163:0.975:2	0/1:0,175:34:175:1.00:2	0/1:71,75:33:146:0.514:2	0/1:94,85:33:179:0.475:2
chr6	39158762	rs33997135	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,38:32:94:0.404:2	./.	./.	./.
chr6	39159072	rs41273124	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,15:29:36:0.417:2	./.	./.	./.	./.	./.
chr6	39282806	rs11756091	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:54,37:32:91:0.407:2	0/1:31,18:31:49:0.367:2	./.	./.	0/1:57,48:31:105:0.457:2	0/1:58,35:31:93:0.376:2	0/1:78,62:32:142:0.443:2	0/1:88,61:32:149:0.409:2	0/1:0,121:32:121:1.00:2	0/1:67,51:32:118:0.432:2	0/1:1,116:32:118:0.991:2
chr6	39283083	rs11753141	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:27,27:32:54:0.500:2	0/1:12,9:31:21:0.429:2	./.	./.	0/1:22,14:31:36:0.389:2	0/1:22,23:30:45:0.511:2	0/1:29,19:32:48:0.396:2	0/1:36,26:32:62:0.419:2	0/1:0,49:31:49:1.00:2	0/1:24,17:33:41:0.415:2	0/1:1,66:32:67:0.985:2
chr6	39284050	rs1535500	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,7:29:29:0.241:2	0/1:5,3:32:8:0.375:2	./.	./.	0/1:11,8:29:19:0.421:2	0/1:8,7:29:15:0.467:2	0/1:8,12:31:20:0.600:2	0/1:9,13:30:22:0.591:2	0/1:0,19:32:19:1.00:2	0/1:6,12:30:18:0.667:2	0/1:0,10:27:10:1.00:2
chr6	39284184	rs3734618	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:36,27:32:63:0.429:2	0/1:13,25:31:38:0.658:2	./.	./.	0/1:43,50:32:93:0.538:2	0/1:46,32:30:78:0.410:2	0/1:55,41:32:96:0.427:2	0/1:56,72:33:128:0.563:2	0/1:0,47:32:47:1.00:2	0/1:25,40:32:65:0.615:2	0/1:0,55:32:55:1.00:2
chr6	39290152	rs138076469	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,24:30:71:0.338:2	./.	./.	./.	./.
chr6	39290200	rs3734619	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,29:31:45:0.644:2	0/1:15,8:31:23:0.348:2	./.	./.	0/1:28,28:31:57:0.500:2	0/1:15,34:31:49:0.694:2	0/1:22,33:31:55:0.600:2	0/1:22,24:32:46:0.522:2	0/1:18,26:33:44:0.591:2	0/1:18,27:30:45:0.600:2	0/1:21,28:31:49:0.571:2
chr6	39311511	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:33:139:0.029:2	./.
chr6	39325078	rs20455	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,36:30:55:0.655:2	0/1:17,21:29:38:0.553:2	./.	0/1:27,14:29:41:0.341:2	0/1:17,12:29:29:0.414:2	0/1:28,17:29:45:0.378:2	0/1:23,18:30:41:0.439:2	./.	./.	0/1:1,51:29:52:0.981:2	0/1:43,31:29:74:0.419:2
chr6	39507894	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:32:108:0.037:2	./.	./.	./.	./.	./.
chr6	39507943	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:32:110:0.036:2	./.	./.	./.
chr6	39563863	rs7738892	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:31:11:0.636:2	./.	./.	./.	./.	./.	0/1:53,42:32:96:0.442:2	./.	./.
chr6	39835372	rs200589550	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,47:31:99:0.475:2	./.	./.	./.	./.	./.
chr6	39838144	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:32:64:0.063:2	./.	./.	./.	./.	./.
chr6	39841093	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:32:140:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	39847072	rs201570348	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,17:32:32:0.531:2	0/1:1,16:30:17:0.941:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	39851818	rs3003929	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:31,25:32:56:0.446:2	0/1:22,16:32:38:0.421:2	./.	./.	0/1:0,38:30:38:1.00:2	0/1:40,34:31:74:0.459:2	0/1:29,22:31:51:0.431:2	./.	0/1:38,14:31:52:0.269:2	0/1:1,32:31:33:0.970:2	./.
chr6	39855288	rs35383047	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,19:31:41:0.463:2	./.
chr6	39864641	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,4:28:28:0.143:2	./.	./.	./.	./.	./.	./.
chr6	39864730	rs3008815	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,14:32:25:0.560:2	0/1:12,6:31:18:0.333:2	0/1:2,3:32:5:0.600:2	0/1:45,10:30:55:0.182:2	0/1:0,25:31:25:1.00:2	0/1:10,14:31:24:0.583:2	0/1:18,17:30:35:0.486:2	./.	./.	0/1:15,15:30:30:0.500:2	./.
chr6	39865007	rs61748650	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,33:33:92:0.359:2	0/1:43,18:32:61:0.295:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	39865047	rs3004067	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:41,27:28:68:0.397:2	0/1:32,9:29:41:0.220:2	./.	0/1:43,34:29:77:0.442:2	0/1:0,40:28:40:1.00:2	0/1:51,41:29:92:0.446:2	0/1:35,19:28:54:0.352:2	./.	./.	0/1:2,53:29:55:0.964:2	./.
chr6	39873399	rs1063171	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:30:12:0.583:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	39874728	rs41273142	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:32:5:0.800:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	39881102	rs7762875	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,93:31:93:1.00:2	./.	./.	./.	./.	0/1:34,40:31:75:0.541:2	./.
chr6	39881120	rs35825585	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,36:32:71:0.507:2	./.
chr6	40360465	rs3734557	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,87:32:88:0.989:2	0/1:0,57:31:57:1.00:2	0/1:0,18:32:18:1.00:2	0/1:5,127:33:132:0.962:2	0/1:105,91:31:196:0.464:2	0/1:81,74:32:156:0.477:2	0/1:93,103:32:196:0.526:2	0/1:2,182:32:184:0.989:2	0/1:0,128:33:128:1.00:2	0/1:0,93:32:93:1.00:2	./.
chr6	40400288	rs61731040	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,69:30:156:0.442:2	./.	./.	0/1:53,37:30:91:0.411:2
chr6	40400316	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:33:73:0.055:2	./.
chr6	40998141	rs736795	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:31:14:0.571:2	./.	./.	0/1:68,58:31:126:0.460:2	0/1:73,85:32:158:0.538:2	0/1:96,66:31:162:0.407:2	./.	0/1:59,65:32:124:0.524:2	0/1:0,139:32:139:1.00:2
chr6	40998167	rs742493	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,83:30:186:0.446:2	./.	./.	./.	./.	./.	./.
chr6	41001759	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:30:104:0.038:2	./.	./.	./.
chr6	41029109	rs2073014	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,28:30:51:0.549:2	0/1:34,31:29:65:0.477:2	0/1:61,34:29:95:0.358:2	./.	0/1:0,60:29:60:1.00:2	0/1:2,76:30:78:0.974:2
chr6	41029342	rs2076472	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,50:32:101:0.495:2	0/1:49,48:32:97:0.495:2	0/1:51,62:32:113:0.549:2	./.	0/1:0,63:32:63:1.00:2	0/1:2,87:32:89:0.978:2
chr6	41162204	rs115991880	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,71:31:132:0.542:2	./.	./.	./.	./.	./.	./.
chr6	41162518	rs3747742	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,90:32:92:0.978:2	0/1:2,66:32:68:0.971:2	./.	./.	./.	0/1:101,76:32:177:0.429:2	0/1:90,78:32:168:0.464:2	0/1:96,71:31:167:0.425:2	0/1:85,95:32:180:0.528:2	0/1:0,125:32:125:1.00:2	0/1:66,75:32:142:0.532:2
chr6	41162562	rs61734887	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,63:32:127:0.496:2	./.	./.	./.	./.	0/1:43,47:32:90:0.522:2
chr6	41165899	rs41273768	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,26:28:93:0.280:2	./.	./.	./.	./.	0/1:34,11:30:45:0.244:2
chr6	41168839	rs62621763	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,40:30:93:0.430:2	./.	./.	./.	./.	0/1:32,30:31:62:0.484:2
chr6	41196156	rs2803496	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,54:30:54:1.00:2	0/1:28,34:29:62:0.548:2	0/1:0,46:31:47:1.00:2	0/1:1,55:31:56:0.982:2	0/1:0,67:32:67:1.00:2	0/1:0,54:31:54:1.00:2	0/1:37,26:31:63:0.413:2
chr6	41196169	rs112680060	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,37:30:63:0.587:2	./.	./.	./.	./.	./.
chr6	41196605	rs9369265	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:31:39:1.00:2	0/1:2,18:31:20:0.900:2	0/1:0,3:31:3:1.00:2	0/1:0,31:31:31:1.00:2	./.	./.	0/1:2,35:32:37:0.946:2	0/1:0,41:31:41:1.00:2	0/1:1,39:30:40:0.975:2	0/1:1,41:30:42:0.976:2	0/1:32,23:30:55:0.418:2
chr6	41196727	rs2101269	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:32:66:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,42:30:42:1.00:2	./.	./.	0/1:2,43:32:45:0.956:2	0/1:0,76:32:76:1.00:2	0/1:0,73:33:73:1.00:2	0/1:1,56:32:57:0.982:2	0/1:33,43:32:76:0.566:2
chr6	41197301	rs9471515	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,32:32:63:0.508:2	./.	./.
chr6	41197785	rs9296357	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,97:33:98:0.990:2	0/1:0,57:33:57:1.00:2	0/1:0,8:32:8:1.00:2	0/1:2,118:33:120:0.983:2	./.	./.	0/1:5,83:33:88:0.943:2	0/1:0,109:33:109:1.00:2	0/1:0,131:34:131:1.00:2	0/1:0,82:33:82:1.00:2	0/1:74,63:33:137:0.460:2
chr6	41197857	rs7769759	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:31:68:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,4:32:4:1.00:2	0/1:2,69:31:71:0.972:2	./.	./.	0/1:2,40:31:42:0.952:2	0/1:0,49:31:49:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,61:31:61:1.00:2	0/1:40,36:31:76:0.474:2
chr6	41250179	rs2234239	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:37,42:33:79:0.532:2	0/1:21,29:33:50:0.580:2	./.	./.	./.	./.	0/1:98,50:32:148:0.338:2	./.	./.	./.	0/1:75,57:32:132:0.432:2
chr6	41303592	rs9394782	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,20:30:37:0.541:2	0/1:10,10:30:20:0.500:2	0/1:1,5:29:6:0.833:2	0/1:1,35:30:36:0.972:2	./.	0/1:31,25:29:56:0.446:2	0/1:1,35:30:36:0.972:2	0/1:1,55:29:56:0.982:2	0/1:23,18:31:41:0.439:2	0/1:25,11:30:36:0.306:2	0/1:14,37:29:51:0.725:2
chr6	41303995	rs9471577	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,28:31:50:0.571:2	./.	./.	0/1:22,12:31:34:0.353:2	./.	0/1:26,17:34:43:0.395:2	./.	0/1:20,11:32:31:0.355:2
chr6	41309552	rs2236369	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,14:32:29:0.483:2	0/1:10,12:31:22:0.545:2	0/1:0,3:31:3:1.00:2	0/1:20,12:31:32:0.375:2	./.	0/1:19,13:32:33:0.406:2	0/1:25,25:31:50:0.500:2	0/1:1,38:31:39:0.974:2	./.	0/1:24,16:31:40:0.400:2	./.
chr6	41318424	rs2273961	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,13:31:53:0.245:2	./.	./.	./.	./.	0/1:15,15:32:30:0.500:2	./.	./.
chr6	41318438	rs2273962	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,22:29:33:0.667:2	0/1:6,8:28:14:0.571:2	0/1:0,2:31:2:1.00:2	0/1:0,51:29:51:1.00:2	0/1:18,19:29:37:0.514:2	0/1:12,24:30:36:0.667:2	0/1:0,31:29:31:1.00:2	0/1:0,46:28:46:1.00:2	0/1:0,29:30:29:1.00:2	0/1:16,21:27:37:0.568:2	0/1:0,38:29:38:1.00:2
chr6	41487147	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:33:87:0.046:2	./.
chr6	41533573	rs34730847	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,73:30:133:0.549:2	./.	0/1:51,97:32:149:0.655:2	./.	0/1:47,74:31:121:0.612:2
chr6	41533574	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,12:16:104:0.115:2	./.	./.	./.	./.	./.
chr6	41533579	rs2104506	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,81:32:150:0.540:2	0/1:83,85:32:168:0.506:2	0/1:51,97:33:148:0.655:2	0/1:71,63:33:134:0.470:2	0/1:61,70:33:131:0.534:2
chr6	41545807	rs72858984	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,19:32:49:0.388:2	./.	./.	./.
chr6	41621271	rs2230088	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,16:30:36:0.444:2	./.	./.	0/1:14,14:30:28:0.500:2	./.	./.	./.
chr6	41652444	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:32:75:0.053:2	./.
chr6	41652514	rs2073158	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:27,23:30:51:0.460:2	0/1:14,14:31:28:0.500:2	0/1:3,6:29:9:0.667:2	./.	0/1:23,31:30:54:0.574:2	./.	./.	./.	./.	./.	0/1:34,24:30:58:0.414:2
chr6	41652604	rs1062966	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:19,9:27:28:0.321:2	0/1:13,13:27:26:0.500:2	0/1:0,4:30:4:1.00:2	./.	0/1:27,11:26:38:0.289:2	0/1:37,15:28:52:0.288:2	0/1:10,9:27:19:0.474:2	0/1:38,31:27:69:0.449:2	0/1:0,41:29:41:1.00:2	0/1:20,14:30:35:0.412:2	0/1:25,15:26:40:0.375:2
chr6	41658566	rs2273068	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	41658889	rs1015149	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	0/1:18,17:31:35:0.486:2	0/1:13,13:32:26:0.500:2	0/1:12,28:31:40:0.700:2	0/1:0,53:31:53:1.00:2	0/1:10,10:31:20:0.500:2	./.
chr6	41739173	rs35310379	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,28:31:29:0.966:2	./.	./.	./.	./.	./.	0/1:0,27:31:27:1.00:2	0/1:16,18:32:34:0.529:2
chr6	41739686	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:33:38:0.105:2	./.	./.
chr6	41753084	rs9394831	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:17,18:31:36:0.514:2	0/1:13,9:33:22:0.409:2	0/1:6,4:28:10:0.400:2	./.	0/1:45,29:31:74:0.392:2	./.	./.	./.	./.	./.	0/1:27,24:30:51:0.471:2
chr6	41754576	rs28403584	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:12,16:31:28:0.571:2	0/1:10,10:31:20:0.500:2	0/1:1,2:31:3:0.667:2	./.	0/1:23,20:31:43:0.465:2	./.	./.	./.	./.	./.	0/1:23,18:30:41:0.439:2
chr6	41771673	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:33:118:0.034:2	./.	./.	./.	./.
chr6	41773576	rs2185798	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:38,38:33:76:0.500:2	0/1:23,12:33:35:0.343:2	0/1:6,5:32:11:0.455:2	./.	0/1:44,50:31:94:0.532:2	0/1:0,104:32:104:1.00:2	0/1:1,128:32:129:0.992:2	0/1:0,132:32:132:1.00:2	0/1:0,65:33:65:1.00:2	./.	./.
chr6	41773735	rs6926173	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,25:28:25:1.00:2	./.	./.	./.	./.	./.	0/1:0,25:28:25:1.00:2	0/1:15,17:27:32:0.531:2
chr6	41774685	rs201585090	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,19:22:51:0.373:2	./.	./.	0/1:69,40:18:109:0.367:2	0/1:77,48:18:126:0.384:2	0/1:76,33:16:109:0.303:2	0/1:73,38:17:111:0.342:2	0/1:91,42:19:133:0.316:2	0/1:78,26:20:104:0.250:2	0/1:32,30:20:62:0.484:2	0/1:38,28:25:66:0.424:2
chr6	41903782	rs1051130	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,13:30:29:0.448:2	0/1:10,13:28:23:0.565:2	0/1:2,3:29:5:0.600:2	0/1:0,39:29:40:1.00:2	0/1:28,9:30:37:0.243:2	0/1:35,19:29:54:0.352:2	0/1:33,4:32:37:0.108:2	0/1:30,17:29:47:0.362:2	./.	0/1:0,36:29:36:1.00:2	0/1:0,33:28:34:1.00:2
chr6	42023297	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:34:149:0.027:2	./.	./.
chr6	42044945	rs3800286	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:30:71:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,9:28:9:1.00:2	0/1:32,42:31:74:0.568:2	0/1:0,45:30:45:1.00:2	./.	0/1:39,38:31:77:0.494:2	./.	./.	0/1:34,28:30:62:0.452:2	0/1:44,60:30:105:0.577:2
chr6	42123317	rs1132156	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,106:33:107:0.991:2	0/1:0,62:32:62:1.00:2	0/1:8,6:34:14:0.429:2	0/1:84,51:33:135:0.378:2	0/1:98,88:32:186:0.473:2	0/1:73,68:32:141:0.482:2	0/1:80,83:32:163:0.509:2	0/1:1,164:32:165:0.994:2	0/1:2,147:34:149:0.987:2	0/1:67,62:33:129:0.481:2	0/1:58,57:33:115:0.496:2
chr6	42130702	rs144002571	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,31:31:68:0.456:2	./.	./.	./.	./.	./.	./.
chr6	42141371	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:28:80:0.050:2	./.	./.	./.	./.
chr6	42162388	rs3749921	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,102:28:102:1.00:2	0/1:0,63:28:63:1.00:2	0/1:8,4:28:12:0.333:2	./.	0/1:78,67:29:145:0.462:2	0/1:57,60:29:117:0.513:2	./.	./.	./.	0/1:3,92:29:95:0.968:2	0/1:2,118:29:120:0.983:2
chr6	42176030	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:31:172:0.023:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	42176619	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:32:137:0.029:2
chr6	42176688	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,3:33:58:0.052:2	./.
chr6	42185564	rs9471809	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,4:30:23:0.174:2	./.	0/1:18,11:32:29:0.379:2	./.	./.	./.
chr6	42200649	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,4:31:17:0.235:2	./.	./.
chr6	42224546	rs2295275	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,43:32:92:0.467:2	./.	0/1:69,47:33:116:0.405:2	./.	./.	./.
chr6	42227183	rs201484047	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.
chr6	42231243	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,41:29:63:0.651:2	./.	./.	./.	./.	./.	./.	./.
chr6	42232475	rs2295274	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,25:31:59:0.424:2	0/1:30,10:30:40:0.250:2	./.	./.	./.	./.	./.	./.	0/1:36,37:31:73:0.507:2	./.	./.
chr6	42233518	rs17704222	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,23:31:41:0.561:2	./.	./.	./.	./.	./.	0/1:9,15:32:24:0.625:2	0/1:35,29:30:64:0.453:2
chr6	42236455	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:31:159:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	42236897	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:33:90:0.044:2	./.
chr6	42532102	rs3749897	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,80:29:152:0.526:2	0/1:71,59:30:131:0.454:2	0/1:76,70:30:148:0.479:2	0/1:89,94:30:183:0.514:2	0/1:0,81:30:81:1.00:2	0/1:34,55:30:89:0.618:2	./.
chr6	42532105	rs374585527	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,4:30:119:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr6	42559926	rs62414610	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,23:33:53:0.434:2	0/1:7,7:31:14:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	42571346	rs16895863	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,13:34:26:0.500:2	0/1:10,3:32:13:0.231:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,42:33:42:1.00:2
chr6	42573513	rs17855250	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:30:11:0.636:2	./.	./.	0/1:37,48:29:85:0.565:2	./.	./.	./.	./.	./.
chr6	42574328	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:31:83:0.048:2	./.	./.	./.	./.	./.
chr6	42585022	rs62414625	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,9:31:23:0.391:2	./.	./.	0/1:75,63:31:138:0.457:2	./.	./.	./.	./.	./.
chr6	42600319	rs5014584	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:52:1.00:2	0/1:0,33:32:33:1.00:2	0/1:5,8:32:13:0.615:2	0/1:0,44:31:44:1.00:2	0/1:0,36:31:36:1.00:2	0/1:57,36:32:93:0.387:2	0/1:0,42:32:42:1.00:2	0/1:1,64:30:65:0.985:2	0/1:0,67:32:67:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,75:31:75:1.00:2
chr6	42627430	rs6916713	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,20:31:42:0.476:2	0/1:23,25:29:48:0.521:2	0/1:21,22:31:43:0.512:2	./.	0/1:25,30:31:55:0.545:2	0/1:8,20:30:28:0.714:2	./.
chr6	42627434	rs6917033	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,21:32:46:0.457:2	0/1:26,26:31:52:0.500:2	0/1:21,25:33:46:0.543:2	0/1:44,30:32:74:0.405:2	0/1:0,58:32:58:1.00:2	0/1:9,24:32:33:0.727:2	./.
chr6	42650772	rs6906859	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,18:32:27:0.667:2	0/1:20,21:33:41:0.512:2	./.	./.
chr6	42666061	rs434102	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:32:20:1.00:2	0/1:0,13:30:13:1.00:2	0/1:5,4:32:9:0.444:2	0/1:0,29:32:29:1.00:2	0/1:0,28:31:28:1.00:2	0/1:22,14:32:36:0.389:2	0/1:0,22:32:22:1.00:2	0/1:18,21:32:39:0.538:2	0/1:19,23:33:42:0.548:2	0/1:0,12:31:12:1.00:2	0/1:0,20:31:20:1.00:2
chr6	42666145	rs425876	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:32:39:1.00:2	0/1:0,24:31:24:1.00:2	0/1:7,4:32:11:0.364:2	0/1:1,74:32:75:0.987:2	0/1:0,70:32:71:1.00:2	0/1:29,42:31:71:0.592:2	0/1:0,53:32:53:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,76:33:76:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,56:32:56:1.00:2
chr6	42666164	rs390659	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,44:30:44:1.00:2	./.	./.	0/1:2,75:30:77:0.974:2	0/1:1,69:30:70:0.986:2	0/1:36,41:29:77:0.532:2	0/1:0,53:31:53:1.00:2	0/1:30,44:29:74:0.595:2	0/1:35,36:31:71:0.507:2	0/1:0,34:31:34:1.00:2	0/1:0,50:30:50:1.00:2
chr6	42689755	rs7764439	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,83:32:84:0.988:2	0/1:0,44:32:44:1.00:2	./.	0/1:1,111:32:112:0.991:2	0/1:61,61:31:122:0.500:2	./.	0/1:71,51:33:122:0.418:2	0/1:70,54:32:124:0.435:2	0/1:56,55:34:111:0.495:2	0/1:33,32:32:65:0.492:2	0/1:1,102:33:103:0.990:2
chr6	42713618	rs2234026	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,45:31:45:1.00:2
chr6	42713770	rs2234025	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,73:30:146:0.500:2	0/1:59,63:31:122:0.516:2	./.	./.
chr6	42824907	rs9471932	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:32:12:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	42832765	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,5:32:11:0.455:2	./.
chr6	42832901	rs115631038	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,34:33:61:0.567:2
chr6	42851311	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:32:67:0.060:2	./.	./.	./.	./.	./.
chr6	42852357	rs16896142	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,28:31:66:0.424:2	./.	./.	./.	./.	./.
chr6	42858227	rs61747887	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,32:32:86:0.372:2	./.	./.
chr6	42858524	rs61732354	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,64:30:141:0.454:2	./.	./.	./.	./.	./.
chr6	42891022	rs9471966	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,10:29:20:0.500:2	./.	./.	0/1:98,77:31:177:0.440:2	./.	0/1:93,85:30:178:0.478:2	0/1:91,60:32:151:0.397:2	./.	./.
chr6	42891947	rs45591034	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,71:32:130:0.546:2	./.
chr6	42893415	rs61743125	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,19:30:36:0.528:2	./.	./.	./.	./.	./.
chr6	42905929	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:31:142:0.028:2	./.	./.	./.
chr6	42906384	rs9471969	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:32:7:0.714:2	./.	./.	0/1:71,65:31:136:0.478:2	./.	0/1:0,116:31:116:1.00:2	0/1:63,44:32:107:0.411:2	./.	./.
chr6	42932200	rs1129187	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,8:31:14:0.571:2	0/1:51,46:31:97:0.474:2	./.	0/1:0,87:31:87:1.00:2	./.	0/1:61,65:32:126:0.516:2	0/1:48,50:33:98:0.510:2	0/1:42,44:31:86:0.512:2	./.
chr6	42932202	rs1129186	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,8:31:14:0.571:2	0/1:50,46:31:96:0.479:2	./.	0/1:0,87:31:87:1.00:2	0/1:138,4:33:142:0.028:2	0/1:0,123:31:123:1.00:2	0/1:48,50:33:98:0.510:2	0/1:0,82:32:82:1.00:2	./.
chr6	42933464	rs35830695	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,22:31:46:0.478:2	./.	0/1:12,18:30:30:0.600:2	./.
chr6	42933526	rs2274515	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,7:30:20:0.350:2	./.	./.
chr6	42933819	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:162,4:32:166:0.024:2	./.	./.	./.	./.	./.	./.
chr6	42946490	rs9462858	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:27:4:1.00:2	./.	./.	./.	./.	./.
chr6	42977070	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:33:119:0.034:2	./.	./.	./.	./.
chr6	42980218	rs11751058	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,39:32:96:0.406:2	./.	./.
chr6	42980288	rs183141686	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,30:32:66:0.455:2	0/1:16,17:32:33:0.515:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	42986363	rs6904371	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,43:31:65:0.662:2	0/1:43,34:33:77:0.442:2	0/1:25,24:31:49:0.490:2	./.
chr6	42992808	rs3749904	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,37:33:96:0.385:2	0/1:74,23:33:97:0.237:2	0/1:49,32:33:81:0.395:2	./.
chr6	42992825	rs3749903	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,54:32:117:0.462:2	0/1:73,27:33:101:0.270:2	0/1:52,37:33:89:0.416:2	./.
chr6	42995211	rs1138141	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,85:33:185:0.459:2	0/1:78,63:33:141:0.447:2	0/1:67,71:33:138:0.514:2	./.
chr6	43006016	rs147493246	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,65:31:126:0.516:2
chr6	43006074	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:32:174:0.023:2	./.	./.	./.	./.	./.
chr6	43008298	rs2273917	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,40:31:83:0.482:2	0/1:35,41:30:76:0.539:2	./.
chr6	43008769	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,4:32:122:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr6	43012991	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:123,4:31:128:0.031:2	./.	./.	./.	./.	./.	./.
chr6	43014298	rs9394939	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,145:31:146:0.993:2	0/1:3,76:32:79:0.962:2	0/1:0,23:33:23:1.00:2	0/1:0,167:33:167:1.00:2	0/1:1,171:32:172:0.994:2	0/1:1,166:32:167:0.994:2	0/1:0,166:33:166:1.00:2	0/1:0,166:32:166:1.00:2	0/1:0,174:33:174:1.00:2	0/1:1,177:32:178:0.994:2	0/1:1,161:32:162:0.994:2
chr6	43014299	rs9381231	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,143:29:144:0.993:2	0/1:3,76:29:79:0.962:2	0/1:0,23:30:23:1.00:2	0/1:0,168:29:168:1.00:2	0/1:1,170:29:171:0.994:2	0/1:1,166:29:167:0.994:2	0/1:3,166:30:169:0.982:2	0/1:2,166:29:168:0.988:2	0/1:0,174:30:174:1.00:2	0/1:1,176:30:177:0.994:2	0/1:1,160:29:161:0.994:2
chr6	43020188	rs4711738	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,23:32:55:0.418:2	0/1:10,9:31:19:0.474:2	./.
chr6	43040666	rs41274920	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,71:29:142:0.507:2	./.
chr6	43106934	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:32:175:0.023:2	./.	./.	./.	./.
chr6	43109751	rs6905948	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:11,16:29:27:0.593:2	0/1:5,4:30:9:0.444:2	./.	0/1:6,16:29:22:0.727:2	./.	0/1:11,12:30:23:0.522:2	./.	0/1:19,4:31:23:0.174:2	0/1:15,10:32:25:0.400:2	0/1:11,6:31:17:0.353:2	0/1:10,12:28:22:0.545:2
chr6	43111342	rs9472017	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:33:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	43152366	rs41274928	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,49:31:117:0.426:2	./.
chr6	43152573	rs9472022	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,7:32:14:0.500:2	./.	./.	./.
chr6	43154091	rs941849	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:31:43:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,4:34:4:1.00:2	0/1:0,63:33:63:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,84:33:84:1.00:2	0/1:0,105:33:105:1.00:2	0/1:0,97:33:97:1.00:2	0/1:0,85:33:86:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,78:33:78:1.00:2
chr6	43156352	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,4:32:77:0.052:2	./.	./.	./.	./.	./.	./.	./.
chr6	43172581	rs80345623	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:32:48:0.083:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	43182906	rs76552409	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,35:30:74:0.473:2	./.	./.	./.	./.	./.
chr6	43184132	rs2273709	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,33:31:69:0.478:2	./.	./.	./.
chr6	43188600	rs11962520	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,52:31:81:0.642:2	./.	./.	./.	./.	./.
chr6	43188940	rs6917902	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,96:32:182:0.527:2	./.	./.	./.
chr6	43190135	rs62417521	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:25,15:31:40:0.375:2	0/1:9,8:32:17:0.471:2	./.	0/1:21,17:31:38:0.447:2	./.	./.	0/1:33,15:32:48:0.313:2	./.	./.	./.	0/1:24,26:31:50:0.520:2
chr6	43193877	rs7832	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,24:31:51:0.471:2	./.	./.	./.
chr6	43223366	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:31:58:0.069:2	./.	./.	./.	./.	./.
chr6	43230970	rs3800294	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:1,4:32:5:0.800:2	./.	0/1:5,4:32:9:0.444:2	./.	0/1:4,9:33:13:0.692:2	./.	0/1:2,2:34:4:0.500:2	./.	./.	0/1:1,2:35:3:0.667:2
chr6	43231048	rs35175743	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,23:29:40:0.575:2	./.	./.
chr6	43252029	rs3800298	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	43270097	rs2651184	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:27:37:1.00:2	0/1:0,16:27:16:1.00:2	0/1:0,5:27:5:1.00:2	0/1:0,38:27:38:1.00:2	0/1:0,26:26:26:1.00:2	0/1:0,38:28:38:1.00:2	0/1:0,21:27:21:1.00:2	0/1:0,25:27:25:1.00:2	0/1:0,26:27:26:1.00:2	0/1:0,39:27:39:1.00:2	0/1:0,10:27:10:1.00:2
chr6	43270151	rs2270860	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,10:34:10:1.00:2	0/1:0,9:32:9:1.00:2	./.
chr6	43273604	rs2242416	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,78:33:79:0.987:2	0/1:0,39:32:39:1.00:2	./.	0/1:50,38:32:88:0.432:2	0/1:0,56:32:56:1.00:2	0/1:0,91:32:91:1.00:2	0/1:2,73:32:75:0.973:2	0/1:43,60:32:103:0.583:2	./.	./.	0/1:51,52:31:103:0.505:2
chr6	43305520	rs35650765	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,58:32:109:0.532:2	0/1:71,53:32:125:0.427:2
chr6	43306322	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:158,4:32:162:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr6	43306346	rs1459675	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,124:32:124:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,134:32:134:1.00:2	0/1:1,106:32:107:0.991:2	0/1:0,149:32:149:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,151:32:151:1.00:2	0/1:0,139:33:139:1.00:2	0/1:0,131:32:131:1.00:2	0/1:0,147:32:147:1.00:2
chr6	43307861	rs10948072	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,5:31:6:0.833:2	./.	./.	./.	./.	./.	0/1:49,36:32:85:0.424:2	0/1:25,16:32:41:0.390:2	./.
chr6	43323852	rs34541323	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,10:31:25:0.400:2	./.	./.
chr6	43399918	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,6:33:153:0.039:2	./.	./.	./.	./.
chr6	43400509	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:29:88:0.045:2	./.	./.	./.
chr6	43411659	rs79175380	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,29:33:58:0.500:2	./.	./.	./.	0/1:30,32:32:62:0.516:2	./.	./.	./.
chr6	43412003	rs373631146	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,23:33:52:0.442:2	./.
chr6	43412865	rs2125739	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:2,65:31:67:0.970:2	0/1:1,58:31:59:0.983:2	./.	0/1:80,45:32:125:0.360:2	./.	./.	./.	0/1:73,60:31:133:0.451:2	0/1:62,43:32:105:0.410:2	./.	0/1:37,46:32:83:0.554:2
chr6	43414147	rs75799355	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,51:32:86:0.593:2	./.	./.	./.	./.	./.	./.
chr6	43418328	rs35056042	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,42:31:72:0.583:2	./.	./.	./.	./.	./.	./.	./.
chr6	43418528	rs35192247	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,52:30:126:0.413:2	./.	./.	./.	./.	./.	./.	./.
chr6	43418691	rs1214748	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:3,57:32:60:0.950:2	0/1:0,38:32:38:1.00:2	./.	0/1:0,93:32:93:1.00:2	./.	./.	./.	0/1:43,60:31:103:0.583:2	0/1:44,35:32:79:0.443:2	./.	0/1:36,37:32:73:0.507:2
chr6	43418732	rs35283134	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:28:66:0.061:2	./.
chr6	43418733	rs1214749	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:3,39:31:42:0.929:2	0/1:0,22:31:22:1.00:2	./.	0/1:0,61:31:61:1.00:2	./.	./.	./.	0/1:33,44:30:77:0.571:2	0/1:27,30:32:57:0.526:2	./.	0/1:27,33:31:60:0.550:2
chr6	43420741	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,13:13:112:0.116:2	./.	./.	./.
chr6	43473025	rs147994267	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,8:31:14:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	43481113	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:32:94:0.043:2	./.	./.	./.	./.	./.
chr6	43484532	rs2231763	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,9:32:16:0.563:2	./.	./.	./.	./.	./.
chr6	43492578	rs2257082	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:32:9:0.444:2	./.	0/1:48,42:31:90:0.467:2	./.	0/1:2,93:32:95:0.979:2	0/1:68,38:32:106:0.358:2	0/1:26,37:32:63:0.587:2	./.	./.
chr6	43496662	rs1106841	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,21:33:21:1.00:2	0/1:0,15:31:15:1.00:2	./.	./.	./.	0/1:12,7:31:19:0.368:2	./.	0/1:10,11:32:21:0.524:2	./.	./.	0/1:0,23:32:23:1.00:2
chr6	43535018	rs34324334	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,68:32:127:0.535:2
chr6	43589395	rs200006314	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,12:12:72:0.167:2	./.	./.	./.	./.	./.	./.
chr6	43596814	rs112851070	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,11:30:21:0.524:2	./.	./.	./.	./.	./.	./.
chr6	43604167	rs35679149	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,40:32:99:0.404:2
chr6	43608187	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:31:109:0.037:2	./.	./.	./.	./.
chr6	43640099	rs2277125	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,29:31:51:0.569:2	./.	./.	./.	./.	0/1:36,19:32:55:0.345:2	0/1:24,19:33:43:0.442:2	./.
chr6	43738977	rs25648	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,20:31:20:1.00:2	./.
chr6	43968412	rs35703624	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,66:31:150:0.440:2	./.	./.	./.	./.	./.	./.
chr6	43968814	rs2295333	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:19,25:31:44:0.568:2	0/1:23,11:28:34:0.324:2	./.	./.	./.	./.	./.	0/1:2,71:30:73:0.973:2	./.	./.	0/1:45,30:30:75:0.400:2
chr6	43970827	rs2295334	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,26:32:50:0.520:2	./.	./.	0/1:18,31:32:49:0.633:2
chr6	44081718	rs6883	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,56:32:56:1.00:2	0/1:0,47:32:47:1.00:2	./.	0/1:61,45:31:106:0.425:2	./.	./.	0/1:2,83:32:85:0.976:2	0/1:44,35:31:80:0.443:2	./.	0/1:29,35:31:64:0.547:2	./.
chr6	44108848	rs12528844	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,9:33:28:0.321:2	./.	./.	./.	./.
chr6	44114606	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:31:100:0.040:2	./.	./.	./.	./.	./.
chr6	44115169	rs4714759	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,66:32:150:0.440:2	./.	./.	0/1:115,82:32:197:0.416:2	./.	./.	./.	./.
chr6	44117607	rs4714761	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,39:29:121:0.322:2	./.	./.	0/1:77,65:29:142:0.458:2	./.	./.	./.	./.
chr6	44117664	rs4714762	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,70:31:163:0.429:2	./.	./.	0/1:98,90:32:188:0.479:2	./.	./.	./.	./.
chr6	44119676	rs3734697	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,54:31:131:0.412:2	./.	./.	0/1:60,24:31:84:0.286:2	./.	./.	./.	./.
chr6	44134581	rs914503	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:30:45:1.00:2	0/1:0,28:31:28:1.00:2	0/1:1,9:31:10:0.900:2	0/1:0,61:31:61:1.00:2	./.	0/1:0,59:31:59:1.00:2	0/1:0,59:32:59:1.00:2	0/1:44,40:32:84:0.476:2	0/1:1,59:32:60:0.983:2	0/1:0,51:32:51:1.00:2	./.
chr6	44141088	rs6938938	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,7:31:15:0.467:2	./.	./.	0/1:3,6:31:9:0.667:2	./.
chr6	44147337	rs56277421	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:18,26:33:44:0.591:2	0/1:12,11:33:23:0.478:2	0/1:2,5:31:7:0.714:2	./.	0/1:33,23:32:56:0.411:2	./.	./.	0/1:51,38:32:89:0.427:2	./.	./.	0/1:42,30:32:72:0.417:2
chr6	44147821	rs34710081	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,10:29:29:0.345:2	./.	0/1:12,16:29:28:0.571:2	./.	./.	0/1:0,33:29:33:1.00:2	0/1:10,17:29:27:0.630:2	0/1:20,37:29:57:0.649:2
chr6	44151490	rs7761137	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:48,40:30:88:0.455:2	0/1:27,39:31:66:0.591:2	./.	0/1:72,56:30:128:0.438:2	0/1:73,30:29:103:0.291:2	./.	./.	./.	./.	0/1:68,43:30:111:0.387:2	./.
chr6	44200694	rs79031234	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:32:136:0.029:2	./.	./.
chr6	44217191	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,4:31:73:0.056:2	./.	./.	./.	./.	./.	./.	./.
chr6	44217441	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:128,4:31:132:0.030:2	./.	./.	./.	./.	./.	./.
chr6	44217836	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,8:19:119:0.067:2
chr6	44218120	rs13296	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:63,55:32:118:0.466:2	0/1:34,51:33:85:0.600:2	0/1:10,9:35:19:0.474:2	./.	0/1:62,46:32:108:0.426:2	0/1:86,71:33:157:0.452:2	0/1:0,78:32:78:1.00:2	./.	0/1:2,147:33:149:0.987:2	0/1:0,146:33:146:1.00:2	0/1:63,76:32:139:0.547:2
chr6	44220814	rs77446513	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,5:32:182:0.027:2	./.	./.	./.	./.
chr6	44220998	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,61:31:134:0.455:2	0/1:49,26:31:75:0.347:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	44221293	rs147025760	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:87,4:33:91:0.044:2	0/1:49,3:33:52:0.058:2	./.	0/1:104,14:32:118:0.119:2	0/1:94,24:32:118:0.203:2	0/1:115,23:30:138:0.167:2	0/1:86,22:31:108:0.204:2	0/1:109,20:32:129:0.155:2	0/1:100,8:33:108:0.074:2	0/1:70,7:31:77:0.091:2	./.
chr6	44221299	rs143048794	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:86,6:31:92:0.065:2	0/1:52,4:31:56:0.071:2	./.	0/1:107,14:29:121:0.116:2	0/1:104,24:30:128:0.188:2	0/1:121,23:27:145:0.160:2	0/1:97,24:28:121:0.198:2	0/1:115,22:29:137:0.161:2	0/1:99,9:32:108:0.083:2	0/1:76,7:28:83:0.084:2	./.
chr6	44221316	rs76772157	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,11:33:95:0.116:2	0/1:55,7:32:63:0.113:2	./.	./.	./.	0/1:149,14:32:164:0.086:2	0/1:127,20:33:147:0.136:2	./.	./.	0/1:69,10:32:79:0.127:2	./.
chr6	44221482	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,6:33:122:0.049:2	./.	./.	./.	./.	./.
chr6	44221487	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:33:116:0.034:2	./.	0/1:130,4:34:134:0.030:2	./.	./.	./.
chr6	44222490	rs138499828	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,15:31:32:0.469:2
chr6	44223010	rs1875324	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,12:30:20:0.600:2	./.	./.	./.	0/1:87,100:31:188:0.535:2	./.	0/1:83,91:31:174:0.523:2	0/1:75,74:30:149:0.497:2	./.
chr6	44223292	rs35112470	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:33:138:0.029:2	./.	./.	./.
chr6	44232920	rs2233434	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,29:32:60:0.483:2
chr6	44232977	rs2233433	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,6:33:16:0.375:2
chr6	44243154	rs12194552	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:28:5:0.800:2	./.
chr6	44243463	rs3734709	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:34:6:0.500:2	./.	./.	0/1:1,3:34:4:0.750:2
chr6	44243559	rs3734710	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.
chr6	44247951	rs484757	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,121:32:121:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,124:32:124:1.00:2	0/1:0,144:32:144:1.00:2	0/1:0,142:32:142:1.00:2	0/1:0,123:33:123:1.00:2	0/1:0,103:32:103:1.00:2	0/1:0,117:33:117:1.00:2
chr6	44250165	rs516582	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:30:54:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,15:30:15:1.00:2	0/1:27,32:30:59:0.542:2	0/1:46,24:31:71:0.343:2	0/1:0,70:30:70:1.00:2	0/1:1,26:29:27:0.963:2	0/1:1,54:30:55:0.982:2	0/1:0,56:31:56:1.00:2	0/1:33,24:30:57:0.421:2	0/1:0,34:30:34:1.00:2
chr6	44253749	rs324143	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:29:44:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,74:28:74:1.00:2	0/1:0,110:29:110:1.00:2	0/1:0,90:29:90:1.00:2	0/1:0,149:29:149:1.00:2	0/1:0,96:29:96:1.00:2	0/1:0,70:30:70:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,71:28:71:1.00:2
chr6	44253765	rs2297336	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,43:32:90:0.478:2	0/1:79,61:33:140:0.436:2	./.	./.	./.	./.	0/1:31,25:31:56:0.446:2	./.
chr6	44255387	rs61742784	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,83:32:190:0.437:2
chr6	44255459	rs324146	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,178:31:178:1.00:2	0/1:0,173:32:173:1.00:2	0/1:0,47:30:47:1.00:2	0/1:108,85:31:195:0.440:2	0/1:122,76:30:199:0.384:2	0/1:2,190:31:192:0.990:2	0/1:4,188:31:192:0.979:2	0/1:1,187:31:188:0.995:2	0/1:0,185:32:185:1.00:2	0/1:101,94:31:195:0.482:2	0/1:0,183:31:183:1.00:2
chr6	44268371	rs325008	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:29:44:1.00:2	0/1:0,34:27:34:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,61:29:61:1.00:2	0/1:0,55:29:55:1.00:2	0/1:0,79:28:79:1.00:2	0/1:0,50:27:50:1.00:2	0/1:1,52:28:54:0.981:2	0/1:0,58:30:58:1.00:2	0/1:0,61:28:61:1.00:2	0/1:1,45:26:46:0.978:2
chr6	44269193	rs498512	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,13:31:13:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,4:31:4:1.00:2	0/1:6,5:31:11:0.455:2	0/1:10,10:30:20:0.500:2	0/1:0,18:30:18:1.00:2	0/1:0,19:30:19:1.00:2	0/1:12,8:31:21:0.400:2	0/1:0,8:33:8:1.00:2	0/1:12,8:31:20:0.400:2	0/1:23,5:32:28:0.179:2
chr6	44270870	rs35623954	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,18:31:31:0.581:2
chr6	44275011	rs324136	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:30:48:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,65:28:65:1.00:2	0/1:1,76:30:77:0.987:2	0/1:0,74:30:74:1.00:2	0/1:1,90:30:91:0.989:2	0/1:0,80:30:80:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,44:29:44:1.00:2
chr6	44310854	rs10948132	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,13:31:25:0.520:2	0/1:16,5:33:21:0.238:2	./.	0/1:15,14:30:29:0.483:2	0/1:14,9:31:23:0.391:2	./.	0/1:13,15:30:28:0.536:2	0/1:0,25:30:25:1.00:2	./.	./.	0/1:13,22:32:35:0.629:2
chr6	44320548	rs4714783	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,48:33:93:0.516:2	0/1:28,10:32:38:0.263:2	0/1:0,15:32:15:1.00:2	0/1:70,69:33:139:0.496:2	0/1:48,36:32:84:0.429:2	0/1:0,118:32:118:1.00:2	0/1:79,71:33:150:0.473:2	./.	0/1:0,123:34:123:1.00:2	0/1:2,100:33:102:0.980:2	0/1:73,65:33:138:0.471:2
chr6	44336139	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,3:35:23:0.130:2	./.
chr6	44371714	rs6934058	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,7:32:19:0.368:2
chr6	44982593	rs12528232	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,32:32:68:0.471:2	0/1:31,18:32:49:0.367:2	./.	./.	./.	0/1:26,23:31:49:0.469:2	./.	./.	./.	0/1:16,22:32:38:0.579:2	./.
chr6	45290634	rs9472463	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,72:32:122:0.590:2	./.	./.	./.
chr6	45515007	rs11498198	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,18:32:43:0.419:2	./.	./.	./.	./.
chr6	46047458	rs3734207	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:41,39:32:80:0.488:2	0/1:18,20:33:38:0.526:2	0/1:8,7:31:15:0.467:2	./.	./.	./.	0/1:68,31:31:99:0.313:2	0/1:46,46:31:92:0.500:2	0/1:42,40:32:82:0.488:2	./.	./.
chr6	46047640	rs723580	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:33,41:33:74:0.554:2	0/1:20,18:33:38:0.474:2	./.	./.	./.	./.	./.	0/1:45,33:32:78:0.423:2	./.	./.	./.
chr6	46047743	rs41271277	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,51:31:94:0.543:2	./.
chr6	46107483	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:33:42:0.098:2
chr6	46107752	rs7451713	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:55,63:33:118:0.534:2	0/1:37,31:32:68:0.456:2	0/1:8,8:33:16:0.500:2	./.	0/1:78,63:32:141:0.447:2	0/1:89,62:32:151:0.411:2	0/1:3,138:32:141:0.979:2	0/1:97,76:32:173:0.439:2	0/1:80,55:34:135:0.407:2	0/1:0,104:32:104:1.00:2	0/1:83,71:33:154:0.461:2
chr6	46129345	rs2235881	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:44,42:33:86:0.488:2	0/1:32,23:33:55:0.418:2	0/1:12,3:32:15:0.200:2	./.	0/1:61,45:32:106:0.425:2	0/1:71,55:32:126:0.437:2	0/1:1,126:33:127:0.992:2	0/1:80,69:32:150:0.463:2	0/1:65,44:33:109:0.404:2	0/1:0,93:33:93:1.00:2	0/1:59,61:33:120:0.508:2
chr6	46135283	rs34450398	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:99,71:29:170:0.418:2	0/1:66,54:29:120:0.450:2	./.	./.	./.	./.	./.	0/1:115,79:30:194:0.407:2	./.	./.	./.
chr6	46135489	rs6926570	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,14:32:35:0.400:2	0/1:9,12:32:21:0.571:2	./.	./.	0/1:19,20:32:39:0.513:2	0/1:11,21:33:32:0.656:2	0/1:0,22:33:22:1.00:2	0/1:14,8:32:22:0.364:2	0/1:10,11:33:21:0.524:2	0/1:0,25:32:25:1.00:2	0/1:14,18:33:32:0.563:2
chr6	46135717	rs150449006	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,31:32:47:0.660:2	./.	./.	./.
chr6	46135884	rs34109856	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:20,16:33:36:0.444:2	0/1:6,6:32:12:0.500:2	./.	./.	./.	./.	./.	0/1:11,14:33:25:0.560:2	./.	./.	./.
chr6	46135984	rs3806995	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,20:30:38:0.526:2	0/1:10,16:32:26:0.615:2	./.	./.	0/1:26,14:29:40:0.350:2	0/1:25,26:30:51:0.510:2	0/1:0,21:31:21:1.00:2	0/1:19,16:30:35:0.457:2	0/1:11,19:31:30:0.633:2	0/1:0,28:31:28:1.00:2	0/1:24,20:32:44:0.455:2
chr6	46563817	rs7761731	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:32,22:30:54:0.407:2	0/1:25,17:31:42:0.405:2	./.	./.	0/1:22,22:31:44:0.500:2	0/1:37,37:31:74:0.500:2	0/1:23,24:29:47:0.511:2	./.	./.	./.	./.
chr6	46609905	rs2277119	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,16:32:17:0.941:2	./.	0/1:0,25:32:25:1.00:2	./.	./.	./.	0/1:64,52:32:116:0.448:2
chr6	46620252	rs12192544	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,54:30:55:0.982:2	0/1:0,30:29:30:1.00:2	./.	./.	0/1:5,16:30:21:0.762:2	0/1:22,24:28:48:0.522:2	0/1:30,17:26:47:0.362:2	./.	./.	./.	./.
chr6	46623698	rs3757241	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,78:31:79:0.987:2	0/1:0,41:32:41:1.00:2	0/1:0,18:31:18:1.00:2	./.	0/1:1,35:31:36:0.972:2	0/1:0,51:31:51:1.00:2	0/1:34,35:32:69:0.507:2	0/1:0,73:32:73:1.00:2	0/1:43,30:33:73:0.411:2	0/1:0,56:32:56:1.00:2	0/1:0,90:32:90:1.00:2
chr6	46632594	rs35884480	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:23,13:33:36:0.361:2	0/1:13,12:33:25:0.480:2	./.	0/1:57,4:35:61:0.066:2	./.	0/1:21,21:32:42:0.500:2	./.	./.	./.	./.	./.
chr6	46656557	rs41273658	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,21:33:45:0.467:2
chr6	46657057	rs3799277	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,113:32:113:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,16:33:16:1.00:2	./.	0/1:0,129:31:129:1.00:2	0/1:0,119:32:120:1.00:2	0/1:68,68:32:136:0.500:2	0/1:1,113:32:114:0.991:2	0/1:60,67:33:127:0.528:2	0/1:0,93:33:93:1.00:2	0/1:0,133:32:133:1.00:2
chr6	46657333	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:32:49:0.082:2	./.	./.	./.	./.
chr6	46658905	rs9381472	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,15:32:15:1.00:2	0/1:0,16:32:16:1.00:2	./.	./.	0/1:1,18:31:19:0.947:2	0/1:7,5:32:12:0.417:2	0/1:7,16:34:23:0.696:2	./.	./.	./.	0/1:14,13:33:27:0.481:2
chr6	46659663	rs12199679	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	0/1:5,12:32:17:0.706:2	./.	./.	./.
chr6	46672943	rs1051931	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,76:32:76:1.00:2	0/1:0,48:32:48:1.00:2	0/1:1,22:33:23:0.957:2	./.	0/1:0,45:33:45:1.00:2	0/1:0,64:32:64:1.00:2	0/1:37,14:33:51:0.275:2	0/1:0,94:32:94:1.00:2	0/1:58,53:33:111:0.477:2	0/1:0,83:33:83:1.00:2	0/1:0,106:33:106:1.00:2
chr6	46684222	rs1805017	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,20:31:40:0.500:2	0/1:9,6:32:15:0.400:2	./.	./.	0/1:0,11:30:11:1.00:2	0/1:27,20:31:47:0.426:2	0/1:20,11:31:31:0.355:2	./.	./.	./.	0/1:33,31:30:64:0.484:2
chr6	46684823	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,9:29:66:0.136:2	./.
chr6	46726500	rs9472839	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,16:32:37:0.432:2	./.	0/1:12,21:32:33:0.636:2	./.	0/1:9,12:31:21:0.571:2
chr6	46761205	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:31:129:0.031:2	./.	./.
chr6	46777275	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,4:32:68:0.060:2	./.	./.	./.	./.	./.	./.	./.
chr6	46793175	rs6920863	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,54:31:127:0.425:2	./.	0/1:69,65:32:134:0.485:2	./.	./.	0/1:0,131:32:131:1.00:2	0/1:65,55:32:120:0.458:2
chr6	46801071	rs2274658	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,14:31:27:0.519:2	./.	0/1:24,16:32:40:0.400:2	./.	./.	0/1:0,41:30:41:1.00:2	0/1:27,22:32:49:0.449:2
chr6	46801219	rs62622418	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,29:33:63:0.460:2	./.	./.	./.	./.
chr6	46802370	rs4714952	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,79:32:79:1.00:2	0/1:0,50:32:50:1.00:2	./.	./.	0/1:37,34:32:71:0.479:2	0/1:63,31:32:94:0.330:2	0/1:0,61:33:61:1.00:2	./.	0/1:0,82:33:82:1.00:2	0/1:0,70:32:70:1.00:2	0/1:51,43:32:94:0.457:2
chr6	46803018	rs2297020	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,88:33:90:0.978:2	0/1:0,71:32:71:1.00:2	./.	./.	./.	0/1:57,52:31:109:0.477:2	0/1:82,55:32:137:0.401:2	./.	0/1:2,144:33:146:0.986:2	./.	./.
chr6	46803102	rs2297019	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,44:30:44:1.00:2	0/1:1,35:30:36:0.972:2	./.	./.	./.	0/1:35,26:28:61:0.426:2	0/1:45,23:27:68:0.338:2	./.	0/1:0,52:31:52:1.00:2	./.	./.
chr6	46806809	rs1804211	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,80:31:173:0.462:2	./.	0/1:96,90:31:186:0.484:2	./.	./.	0/1:0,143:32:143:1.00:2	0/1:57,42:32:99:0.424:2
chr6	46823728	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.	./.
chr6	46824448	rs643409	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:32:82:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,66:33:66:1.00:2	0/1:2,49:32:51:0.961:2	0/1:0,89:33:90:1.00:2
chr6	46824614	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:123,4:33:127:0.031:2	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:32:150:0.027:2	./.	./.
chr6	46824635	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,4:33:97:0.041:2	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:34:109:0.037:2	./.	./.
chr6	46826115	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,3:32:22:0.136:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	46826508	rs613870	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:31:63:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,85:31:85:1.00:2	0/1:0,85:30:85:1.00:2	0/1:0,75:30:75:1.00:2	0/1:0,53:31:53:1.00:2	0/1:1,103:31:104:0.990:2	0/1:0,78:31:78:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,67:31:67:1.00:2
chr6	46826636	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:33:63:0.065:2	./.	./.	./.	./.
chr6	46826715	rs572248	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:32:77:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,86:31:86:1.00:2	0/1:1,73:31:74:0.986:2	0/1:0,86:32:86:1.00:2	0/1:0,100:31:100:1.00:2	0/1:1,73:33:74:0.986:2	0/1:0,59:32:59:1.00:2	0/1:0,74:32:74:1.00:2
chr6	46826844	rs571247	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,94:30:96:0.979:2	0/1:0,58:30:58:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,130:30:130:1.00:2	0/1:0,59:29:59:1.00:2	0/1:67,49:29:116:0.422:2	0/1:4,70:30:74:0.946:2	0/1:1,100:30:101:0.990:2	0/1:0,127:30:127:1.00:2	0/1:0,105:30:105:1.00:2	0/1:1,122:31:123:0.992:2
chr6	46826910	rs611779	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,109:32:111:0.982:2	0/1:0,69:32:69:1.00:2	0/1:0,9:32:9:1.00:2	0/1:1,132:32:134:0.992:2	0/1:0,73:32:73:1.00:2	0/1:1,124:32:125:0.992:2	0/1:2,86:32:88:0.977:2	0/1:0,115:32:115:1.00:2	0/1:0,141:33:141:1.00:2	0/1:0,96:32:97:1.00:2	0/1:1,128:33:129:0.992:2
chr6	46826979	rs9381487	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,41:31:88:0.466:2	0/1:30,23:32:53:0.434:2	./.	./.	./.	0/1:57,42:32:99:0.424:2	0/1:25,36:32:62:0.590:2	./.	0/1:0,79:33:79:1.00:2	./.	./.
chr6	46827073	rs547499	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,52:30:100:0.520:2	0/1:34,23:29:57:0.404:2	0/1:0,18:29:18:1.00:2	0/1:0,135:30:135:1.00:2	0/1:5,77:29:82:0.939:2	0/1:71,57:30:128:0.445:2	0/1:77,43:29:120:0.358:2	0/1:2,167:29:169:0.988:2	./.	0/1:2,119:29:121:0.983:2	0/1:1,144:29:146:0.993:2
chr6	46827126	rs610856	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,79:33:80:0.988:2	0/1:0,59:32:59:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,114:33:114:1.00:2	0/1:1,45:32:46:0.978:2	0/1:0,78:32:78:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,83:33:83:1.00:2	0/1:0,84:33:84:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,102:33:102:1.00:2
chr6	46827239	rs9395218	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,30:31:78:0.385:2	0/1:35,22:31:57:0.386:2	./.	./.	./.	0/1:59,50:30:109:0.459:2	0/1:71,24:30:95:0.253:2	./.	0/1:3,110:31:113:0.973:2	./.	./.
chr6	46832813	rs614826	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,55:31:103:0.534:2	0/1:26,35:32:61:0.574:2	0/1:0,15:31:15:1.00:2	0/1:0,126:31:126:1.00:2	0/1:2,88:31:90:0.978:2	0/1:80,54:31:134:0.403:2	0/1:48,45:31:93:0.484:2	0/1:2,103:31:105:0.981:2	./.	0/1:0,114:32:114:1.00:2	0/1:3,154:32:157:0.981:2
chr6	46834685	rs586024	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:32:65:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,19:32:19:1.00:2	0/1:1,111:32:112:0.991:2	0/1:0,78:32:78:1.00:2	0/1:0,73:31:73:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,115:32:115:1.00:2	0/1:0,83:33:83:1.00:2	0/1:0,96:32:96:1.00:2	0/1:2,85:32:87:0.977:2
chr6	46856100	rs678312	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,178:33:179:0.994:2	0/1:0,106:32:106:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,182:32:182:1.00:2	0/1:78,75:32:153:0.490:2	0/1:0,181:32:181:1.00:2	0/1:0,163:33:163:1.00:2	0/1:0,169:33:169:1.00:2	0/1:0,183:34:183:1.00:2	./.	0/1:0,168:33:168:1.00:2
chr6	46977475	rs73480725	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,25:32:70:0.357:2	0/1:24,17:32:41:0.415:2	./.	./.	./.	0/1:63,60:32:123:0.488:2	./.	./.	./.	./.	./.
chr6	46995501	rs76755338	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,66:33:66:1.00:2
chr6	47221139	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,4:32:28:0.143:2	./.
chr6	47563692	rs2039503	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:32:22:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,40:32:40:1.00:2
chr6	47624239	rs1485784	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:32:35:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,2:31:2:1.00:2	0/1:21,24:33:45:0.533:2	0/1:24,14:32:38:0.368:2	./.	0/1:0,58:33:58:1.00:2	0/1:3,29:33:32:0.906:2	0/1:27,27:33:54:0.500:2	0/1:0,39:33:39:1.00:2	0/1:0,31:33:31:1.00:2
chr6	47624299	rs9369730	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:30:47:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,5:27:5:1.00:2	0/1:40,48:30:88:0.545:2	0/1:39,24:29:63:0.381:2	./.	0/1:0,91:29:91:1.00:2	0/1:4,65:28:70:0.942:2	0/1:53,36:30:89:0.404:2	0/1:0,87:30:87:1.00:2	0/1:0,69:29:69:1.00:2
chr6	47626833	rs12201065	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,4:31:4:1.00:2	0/1:39,25:32:64:0.391:2	0/1:18,23:32:41:0.561:2	./.	0/1:46,24:32:70:0.343:2	0/1:3,54:32:57:0.947:2	0/1:35,26:32:61:0.426:2	0/1:20,29:32:49:0.592:2	0/1:29,28:32:57:0.491:2
chr6	47646718	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.	./.	./.
chr6	47646748	rs13212023	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,64:32:158:0.405:2	./.	./.	0/1:97,67:32:165:0.409:2	./.	./.	./.	0/1:84,101:32:185:0.546:2
chr6	47646842	rs6907125	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:31:71:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,5:30:5:1.00:2	0/1:33,31:30:65:0.484:2	0/1:46,39:30:85:0.459:2	./.	0/1:60,33:31:93:0.355:2	0/1:2,86:30:88:0.977:2	0/1:36,49:30:85:0.576:2	0/1:0,52:29:52:1.00:2	0/1:57,42:29:99:0.424:2
chr6	47649222	rs8180544	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,66:31:67:0.985:2	0/1:0,43:30:43:1.00:2	0/1:0,9:31:9:1.00:2	0/1:34,40:30:74:0.541:2	0/1:13,27:30:40:0.675:2	./.	0/1:19,29:32:48:0.604:2	0/1:2,80:30:83:0.976:2	0/1:41,31:32:72:0.431:2	0/1:0,80:31:80:1.00:2	0/1:41,56:31:97:0.577:2
chr6	47649265	rs17541107	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,20:31:59:0.339:2	0/1:27,14:31:41:0.341:2	0/1:0,50:30:50:1.00:2	0/1:25,23:31:48:0.479:2	./.	0/1:24,35:32:59:0.593:2	./.	0/1:53,29:31:82:0.354:2
chr6	47649573	rs10807371	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:31:51:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,9:31:9:1.00:2	0/1:36,20:31:56:0.357:2	0/1:26,23:30:49:0.469:2	./.	0/1:35,25:31:60:0.417:2	0/1:0,59:31:59:1.00:2	0/1:46,33:31:79:0.418:2	0/1:1,47:30:48:0.979:2	0/1:53,27:31:80:0.338:2
chr6	47649574	rs10807372	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,9:33:9:1.00:2	0/1:36,20:33:56:0.357:2	0/1:27,23:31:50:0.460:2	./.	0/1:35,25:33:60:0.417:2	0/1:0,59:31:59:1.00:2	0/1:46,33:33:79:0.418:2	0/1:0,47:32:47:1.00:2	0/1:51,27:32:78:0.346:2
chr6	47649694	rs9381594	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,90:29:91:0.989:2	0/1:0,51:29:51:1.00:2	0/1:0,11:28:11:1.00:2	0/1:57,51:28:108:0.472:2	0/1:79,57:28:136:0.419:2	./.	0/1:64,44:28:108:0.407:2	0/1:3,128:28:132:0.977:2	0/1:91,58:29:149:0.389:2	0/1:0,77:28:77:1.00:2	0/1:61,60:29:121:0.496:2
chr6	47649998	rs372471413	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:90,93:33:183:0.508:2	./.	./.	./.	./.	./.	./.
chr6	47653629	rs10948375	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,65:31:146:0.445:2	./.	./.	0/1:79,83:31:162:0.512:2	./.
chr6	47654742	rs9296573	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,156:32:158:0.987:2	0/1:1,94:32:95:0.989:2	0/1:0,16:31:16:1.00:2	0/1:91,91:32:182:0.500:2	0/1:65,48:31:113:0.425:2	./.	0/1:65,41:32:106:0.387:2	0/1:3,170:32:173:0.983:2	0/1:113,78:33:191:0.408:2	0/1:0,158:32:158:1.00:2	0/1:109,83:32:192:0.432:2
chr6	47682449	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,87:30:188:0.463:2	./.	./.	./.	./.	./.	./.	./.
chr6	47682604	rs9369738	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,97:30:97:1.00:2	0/1:0,58:29:58:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,132:30:132:1.00:2	0/1:52,37:30:89:0.416:2	0/1:91,54:30:145:0.372:2	0/1:0,91:30:91:1.00:2	0/1:3,121:30:124:0.976:2	0/1:0,120:30:120:1.00:2	0/1:0,71:30:71:1.00:2	0/1:0,118:30:118:1.00:2
chr6	47684591	rs1360157	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,78:31:80:0.975:2	0/1:4,49:32:53:0.925:2	0/1:0,12:31:12:1.00:2	0/1:58,60:31:118:0.508:2	0/1:46,22:30:68:0.324:2	./.	0/1:30,32:31:62:0.516:2	0/1:4,79:31:83:0.952:2	0/1:44,42:32:87:0.488:2	0/1:0,98:31:98:1.00:2	0/1:75,48:31:123:0.390:2
chr6	47686101	rs6914013	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,131:33:131:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,114:32:114:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,120:32:120:1.00:2	0/1:0,125:33:125:1.00:2	0/1:0,108:32:108:1.00:2	0/1:1,150:32:151:0.993:2
chr6	47779467	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:31:132:0.030:2	./.	./.	./.	./.	./.
chr6	47846603	rs41273690	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,15:30:29:0.517:2	./.
chr6	47847179	rs3799276	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,38:29:97:0.392:2	0/1:36,39:28:75:0.520:2	0/1:9,5:30:14:0.357:2	0/1:0,108:29:108:1.00:2	./.	0/1:0,124:29:124:1.00:2	0/1:39,55:29:94:0.585:2	0/1:56,63:28:119:0.529:2	0/1:0,115:29:115:1.00:2	0/1:0,99:29:99:1.00:2	0/1:61,71:29:132:0.538:2
chr6	47847370	rs139641046	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,25:28:53:0.472:2	./.	./.	./.	./.	./.	./.	./.
chr6	47847401	rs2068006	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:23,31:29:54:0.574:2	0/1:24,16:28:40:0.400:2	./.	0/1:0,44:30:44:1.00:2	./.	0/1:2,49:29:51:0.961:2	0/1:22,22:29:44:0.500:2	0/1:26,24:28:50:0.480:2	0/1:0,42:31:42:1.00:2	0/1:1,30:31:31:0.968:2	0/1:23,24:29:47:0.511:2
chr6	47976453	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:33:128:0.031:2	./.
chr6	48036327	rs200176519	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,5:24:29:0.172:2	./.	0/1:20,7:21:27:0.259:2	./.	0/1:32,5:25:37:0.135:2	./.	./.	0/1:26,4:24:30:0.133:2
chr6	49403282	rs8589	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,7:28:17:0.412:2	0/1:37,49:29:86:0.570:2	./.	0/1:0,91:29:91:1.00:2	./.	0/1:0,98:28:98:1.00:2	./.	./.	./.
chr6	49412433	rs1141321	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,34:32:57:0.596:2	./.	0/1:27,32:32:59:0.542:2	./.	./.	./.
chr6	49415448	rs2229385	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,47:31:94:0.500:2	./.	0/1:44,49:31:93:0.527:2	./.	./.	./.	./.	./.
chr6	49425521	rs2229384	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,5:31:8:0.625:2	0/1:62,33:32:95:0.347:2	./.	0/1:1,66:31:67:0.985:2	./.	0/1:0,80:31:80:1.00:2	./.	./.	./.
chr6	49439805	rs4267943	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,3:33:12:0.250:2	./.	0/1:10,4:33:14:0.286:2	./.	./.	./.
chr6	49459978	rs2501968	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:32:17:1.00:2	0/1:0,12:32:12:1.00:2	./.	0/1:14,13:32:27:0.481:2	0/1:0,9:30:9:1.00:2	0/1:9,6:30:15:0.400:2	0/1:0,17:31:17:1.00:2	./.	0/1:0,28:32:28:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,36:31:36:1.00:2
chr6	49479750	rs13193063	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,38:29:38:1.00:2	0/1:0,18:28:18:1.00:2	./.	./.	./.	./.	./.	0/1:35,17:29:52:0.327:2	0/1:0,63:30:63:1.00:2	0/1:26,16:28:43:0.381:2	0/1:36,40:29:76:0.526:2
chr6	49479775	rs1480615	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,24:32:24:1.00:2	0/1:0,13:31:13:1.00:2	./.	./.	./.	./.	./.	0/1:0,29:32:29:1.00:2	0/1:0,32:32:32:1.00:2	0/1:18,10:31:28:0.357:2	0/1:0,51:32:51:1.00:2
chr6	49485266	rs9367358	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,9:31:13:0.692:2	0/1:37,56:31:94:0.602:2	0/1:2,48:31:50:0.960:2	./.	0/1:0,68:31:68:1.00:2	./.	./.	0/1:50,46:32:96:0.479:2	./.
chr6	49489397	rs9369905	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:1,61:32:62:0.984:2	0/1:0,39:32:39:1.00:2	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	0/1:52,25:32:77:0.325:2	0/1:3,70:33:73:0.959:2	0/1:25,24:32:49:0.490:2	0/1:46,41:32:87:0.471:2
chr6	49494241	rs9367359	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:4,109:29:113:0.965:2	0/1:5,66:29:71:0.930:2	0/1:17,10:31:27:0.370:2	./.	./.	./.	./.	0/1:5,170:29:175:0.971:2	0/1:0,167:30:167:1.00:2	0/1:87,67:30:154:0.435:2	0/1:3,149:29:152:0.980:2
chr6	49494453	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,27:31:57:0.474:2	./.	./.	./.	./.	./.	./.	./.
chr6	49518914	rs6919674	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,55:33:55:1.00:2	0/1:0,42:32:42:1.00:2	0/1:2,47:31:49:0.959:2
chr6	49519041	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,5:31:184:0.027:2	./.	./.	./.
chr6	49580194	rs10485291	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,32:31:95:0.337:2	./.	./.	./.	./.	./.
chr6	49580247	rs16879498	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,17:31:43:0.395:2	./.	./.	./.	./.	./.
chr6	49668405	rs57295760	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:146,10:18:158:0.064:2	./.	./.	./.	./.	./.	./.	0/1:135,12:18:149:0.082:2
chr6	49696473	rs488132	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,34:31:73:0.466:2	./.	./.	./.	./.	./.
chr6	49700968	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:30:90:0.044:2	./.	./.	./.	./.	./.
chr6	49701439	rs1864312	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:31,42:32:73:0.575:2	0/1:19,28:31:47:0.596:2	0/1:9,5:30:14:0.357:2	./.	0/1:0,49:31:49:1.00:2	./.	0/1:0,55:32:55:1.00:2	0/1:55,40:32:95:0.421:2	0/1:0,76:33:76:1.00:2	0/1:47,38:32:85:0.447:2	0/1:0,103:32:103:1.00:2
chr6	49701523	rs495335	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,40:32:91:0.440:2	0/1:18,27:32:45:0.600:2	0/1:8,12:33:20:0.600:2	0/1:0,104:32:104:1.00:2	0/1:0,77:31:77:1.00:2	0/1:0,114:32:114:1.00:2	0/1:0,92:32:92:1.00:2	0/1:84,59:32:143:0.413:2	0/1:0,124:33:124:1.00:2	0/1:58,39:33:98:0.402:2	0/1:1,104:33:105:0.990:2
chr6	49754589	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:117,4:35:121:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr6	49814379	rs3209304	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,8:32:16:0.500:2	./.	./.	./.	./.	0/1:36,36:32:72:0.500:2	./.	./.	./.
chr6	49928116	rs17736782	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:32:14:0.286:2	./.	./.	./.	0/1:27,28:32:55:0.509:2	0/1:36,39:31:75:0.520:2	./.	./.	./.
chr6	49931783	rs73737276	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,10:29:19:0.526:2	./.	./.	./.	0/1:41,21:29:62:0.339:2	0/1:43,54:29:98:0.557:2	./.	./.	./.
chr6	49989657	rs10948540	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,5:27:15:0.333:2	0/1:9,9:30:18:0.500:2	./.	./.	./.	./.	0/1:17,3:32:20:0.150:2	./.
chr6	50683009	rs78648104	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,77:32:158:0.487:2	0/1:64,71:31:135:0.526:2	./.	./.	./.	./.	./.	./.
chr6	50712955	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,39:31:99:0.394:2
chr6	51483961	rs9381994	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,13:30:27:0.481:2	0/1:11,7:30:18:0.389:2	./.	0/1:0,27:29:27:1.00:2	0/1:8,10:28:19:0.556:2	0/1:16,18:31:34:0.529:2	0/1:0,24:29:24:1.00:2	0/1:17,10:30:27:0.370:2	0/1:0,30:30:30:1.00:2	0/1:10,8:29:18:0.444:2	0/1:0,47:29:47:1.00:2
chr6	51491884	rs4715227	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,46:28:95:0.489:2	0/1:30,20:28:50:0.400:2	0/1:0,8:27:8:1.00:2	0/1:0,66:28:66:1.00:2	0/1:34,28:28:62:0.452:2	0/1:41,29:28:70:0.414:2	0/1:0,37:27:37:1.00:2	./.	0/1:0,66:29:66:1.00:2	0/1:32,30:28:62:0.484:2	0/1:49,32:28:81:0.395:2
chr6	51497503	rs76572975	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,38:31:85:0.447:2	./.	./.	./.	./.
chr6	51524403	rs34460237	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,17:31:54:0.315:2	./.
chr6	51586771	rs9349593	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,35:30:57:0.614:2	0/1:9,10:30:19:0.526:2	0/1:0,5:30:5:1.00:2	0/1:1,35:29:36:0.972:2	0/1:0,29:30:29:1.00:2	0/1:29,24:30:53:0.453:2	./.	./.	0/1:0,53:32:53:1.00:2	0/1:23,16:31:39:0.410:2	0/1:25,23:32:48:0.479:2
chr6	51586772	rs45451196	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:22,34:30:56:0.607:2	0/1:9,10:30:19:0.526:2	./.	0/1:1,35:30:36:0.972:2	./.	./.	./.	./.	0/1:0,53:31:53:1.00:2	0/1:23,16:31:39:0.410:2	0/1:24,23:31:47:0.489:2
chr6	51613177	rs765525	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,111:32:112:0.991:2	0/1:42,61:32:103:0.592:2	./.	./.	./.	./.	./.
chr6	51720838	rs9349603	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,45:32:96:0.469:2	0/1:35,38:31:73:0.521:2	0/1:44,37:32:81:0.457:2	./.	0/1:42,50:33:92:0.543:2	./.	./.	0/1:56,36:33:92:0.391:2
chr6	51732807	rs12210295	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,12:31:12:1.00:2	0/1:17,22:31:39:0.564:2	0/1:25,10:30:35:0.286:2	0/1:35,27:30:62:0.435:2	0/1:1,21:31:22:0.955:2	0/1:27,21:32:48:0.438:2	0/1:0,62:33:62:1.00:2	0/1:0,36:32:36:1.00:2	0/1:24,33:31:57:0.579:2
chr6	51774165	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:31:131:0.031:2	./.	./.	./.	./.	./.
chr6	51875250	rs2435322	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:33:58:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,67:32:67:1.00:2	0/1:1,57:33:59:0.983:2	0/1:1,86:33:87:0.989:2	0/1:0,50:33:50:1.00:2	0/1:0,90:33:90:1.00:2
chr6	51890823	rs9296669	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:26,25:29:52:0.490:2	0/1:10,11:30:21:0.524:2	./.	./.	0/1:0,35:30:35:1.00:2	./.	0/1:0,28:30:28:1.00:2	0/1:0,54:30:54:1.00:2	0/1:18,16:31:34:0.471:2	0/1:17,14:31:31:0.452:2	0/1:15,20:30:35:0.571:2
chr6	51890852	rs9689306	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,14:31:32:0.438:2	./.	./.	./.	./.
chr6	51914956	rs9370096	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:32,19:31:51:0.373:2	0/1:17,12:31:29:0.414:2	0/1:0,2:32:2:1.00:2	./.	0/1:0,57:31:57:1.00:2	./.	0/1:1,61:31:62:0.984:2	0/1:0,64:31:64:1.00:2	0/1:32,33:31:65:0.508:2	0/1:46,42:32:88:0.477:2	0/1:39,27:32:66:0.409:2
chr6	51917968	rs4715271	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:31,17:30:48:0.354:2	0/1:17,9:28:26:0.346:2	0/1:6,6:31:12:0.500:2	./.	./.	./.	./.	./.	0/1:41,35:30:76:0.461:2	./.	./.
chr6	51920465	rs201117261	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,7:27:48:0.146:2	0/1:62,8:16:70:0.114:2	./.	./.	0/1:58,13:12:71:0.183:2	./.	./.	./.
chr6	51920485	rs45500692	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,24:31:56:0.429:2	./.	0/1:28,33:31:61:0.541:2	./.	./.	./.	./.	./.
chr6	51924774	rs1896976	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:33:43:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,45:33:45:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,55:33:55:1.00:2
chr6	51947237	rs9474143	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,21:32:52:0.404:2	./.	0/1:0,45:31:45:1.00:2	./.	./.	./.	0/1:31,32:32:63:0.508:2	0/1:40,29:32:69:0.420:2
chr6	51947257	rs6901799	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,28:31:57:0.491:2	0/1:16,15:32:31:0.484:2	0/1:3,3:32:6:0.500:2	0/1:31,34:30:65:0.523:2	./.	./.	./.	./.	0/1:33,32:33:65:0.492:2	./.	./.
chr6	52101739	rs763780	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,33:30:67:0.493:2	./.
chr6	52101758	rs11465553	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,51:31:108:0.472:2	./.	./.	./.	./.	./.	./.
chr6	52129484	rs2230240	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,34:32:69:0.493:2	0/1:27,14:31:41:0.341:2	0/1:5,15:32:20:0.750:2	0/1:70,40:31:110:0.364:2	./.	0/1:44,48:31:92:0.522:2	./.	0/1:6,132:32:138:0.957:2	0/1:65,60:33:125:0.480:2	./.	0/1:1,81:32:82:0.988:2
chr6	52130875	rs45548236	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,4:31:16:0.250:2	./.	0/1:49,43:31:92:0.467:2	./.	./.	./.	./.	./.	./.
chr6	52134008	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:31:50:0.080:2
chr6	52144221	rs2307331	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,12:32:23:0.522:2	./.	./.	./.	0/1:16,19:33:35:0.543:2	0/1:12,15:31:27:0.556:2	./.
chr6	52144286	rs34890826	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,3:31:30:0.100:2	./.	./.
chr6	52268008	rs3748066	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,9:28:9:1.00:2	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	0/1:0,5:28:5:1.00:2
chr6	52268552	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:33:195:0.021:2	./.	./.	./.	./.
chr6	52268638	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:143,4:31:147:0.027:2	./.	./.	./.	./.	./.	./.
chr6	52268890	rs17591381	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,28:32:54:0.519:2	0/1:18,11:29:29:0.379:2	./.	./.	./.	./.	./.	./.	0/1:43,34:31:78:0.442:2	0/1:35,29:30:64:0.453:2	./.
chr6	52269046	rs3799274	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,21:31:47:0.447:2
chr6	52269151	rs655113	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,35:32:68:0.515:2	./.	0/1:41,39:33:80:0.488:2	./.	0/1:41,32:32:73:0.438:2	./.	./.	./.
chr6	52269199	rs3799272	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,41:33:87:0.471:2	0/1:40,15:31:55:0.273:2	./.	./.	./.	./.	./.	0/1:50,54:32:104:0.519:2
chr6	52269547	rs3180067	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,25:32:51:0.490:2	./.	0/1:37,26:33:63:0.413:2	./.	0/1:37,51:34:89:0.580:2	./.	./.
chr6	52269685	rs3180068	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:33:3:0.667:2	0/1:55,39:32:94:0.415:2	0/1:2,39:31:41:0.951:2	./.	0/1:40,15:32:55:0.273:2	./.	0/1:49,38:33:87:0.437:2	./.	0/1:51,40:33:91:0.440:2
chr6	52269936	rs10484875	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:13,21:29:34:0.618:2	0/1:16,13:32:29:0.448:2	./.	./.	./.	./.	./.	0/1:25,18:29:43:0.419:2	0/1:22,23:32:45:0.511:2	0/1:17,7:31:24:0.292:2	./.
chr6	52270504	rs9395789	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,35:33:86:0.407:2	0/1:30,18:31:48:0.375:2	./.	./.	./.	./.	./.	0/1:58,43:32:102:0.426:2
chr6	52270925	rs41273736	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,17:33:28:0.607:2
chr6	52270992	rs10807445	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,9:31:23:0.391:2	./.	0/1:12,6:28:18:0.333:2	./.	./.	./.	./.	./.
chr6	52271204	rs4715300	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	0/1:18,34:32:52:0.654:2	./.	0/1:51,39:32:90:0.433:2	./.	0/1:44,62:34:107:0.585:2	./.	./.
chr6	52271707	rs6933844	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,29:31:50:0.580:2	./.	0/1:18,18:32:36:0.500:2	./.	0/1:32,27:31:59:0.458:2	./.	./.
chr6	52272033	rs474848	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,31:33:69:0.449:2	0/1:18,25:33:43:0.581:2	0/1:0,5:32:5:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,59:32:59:1.00:2	0/1:1,57:33:58:0.983:2	0/1:52,46:32:98:0.469:2	0/1:53,41:33:94:0.436:2	0/1:29,19:32:48:0.396:2	0/1:1,75:33:76:0.987:2
chr6	52272313	rs1297	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,44:34:93:0.478:2
chr6	52272471	rs2397089	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,8:32:25:0.320:2	0/1:7,7:32:14:0.500:2	0/1:3,3:33:6:0.500:2	0/1:16,29:32:46:0.644:2	0/1:11,18:31:29:0.621:2	0/1:18,36:31:54:0.667:2	0/1:18,13:30:31:0.419:2	0/1:30,14:32:44:0.318:2	0/1:25,18:31:43:0.419:2	./.	0/1:16,15:30:31:0.484:2
chr6	52272574	rs4498353	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.	./.	./.	0/1:5,8:32:13:0.615:2	./.	./.
chr6	52303291	rs3804506	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,37:33:79:0.474:2
chr6	52343899	rs1266787	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,27:31:65:0.415:2	0/1:22,18:30:40:0.450:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	52355105	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:33:96:0.042:2	./.	./.	./.	./.	./.
chr6	52357071	rs17851770	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:32:12:0.250:2	./.	./.	./.	0/1:57,34:32:91:0.374:2	./.	./.	./.	./.
chr6	52370509	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,15:12:138:0.110:2	./.	./.	./.	./.	./.
chr6	52548950	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:33:142:0.028:2	./.	./.	./.	./.	./.
chr6	52615415	rs6577	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:27,41:29:68:0.603:2	0/1:27,23:29:50:0.460:2	./.	0/1:24,43:29:67:0.642:2	./.	0/1:26,33:30:59:0.559:2	./.	0/1:35,31:29:66:0.470:2	./.	./.	./.
chr6	52615477	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:30:101:0.040:2	./.	./.	./.
chr6	52617731	rs2180314	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,14:32:14:1.00:2	0/1:73,76:32:149:0.510:2	0/1:1,69:32:70:0.986:2	0/1:65,81:32:146:0.555:2	0/1:0,100:32:100:1.00:2	0/1:79,57:32:136:0.419:2	0/1:0,144:32:144:1.00:2	0/1:0,136:33:136:1.00:2	./.
chr6	52619747	rs145821419	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:30:129:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	52657775	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,4:32:115:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr6	52658962	rs1051775	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:59,46:33:105:0.438:2	0/1:17,32:32:49:0.653:2	./.	./.	./.	./.	./.	./.	./.	0/1:64,51:33:115:0.443:2	0/1:0,151:33:152:1.00:2
chr6	52701143	rs2397118	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:32:37:1.00:2	0/1:1,20:32:21:0.952:2	0/1:0,7:31:7:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,37:31:37:1.00:2	0/1:1,19:31:20:0.950:2	0/1:0,31:30:31:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,38:31:38:1.00:2
chr6	52702405	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,3:32:35:0.086:2	./.	./.	./.	./.	./.
chr6	52705534	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:31:44:0.091:2	./.	./.	./.
chr6	52705574	rs373314602	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,4:33:71:0.056:2	./.	./.	./.	./.	./.	./.	./.
chr6	52705613	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,6:32:71:0.085:2	./.	./.	./.	./.	./.	./.	./.
chr6	52761679	rs370999288	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,4:32:35:0.114:2	./.	./.	./.	./.	./.	./.
chr6	52761694	rs140368357	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:32:90:0.044:2	./.	./.	./.
chr6	52849342	rs45507994	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,75:32:156:0.481:2	./.	0/1:57,74:32:131:0.565:2	./.	./.	./.	./.	./.
chr6	52878637	rs2297211	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,72:26:150:0.500:2	./.	./.	0/1:92,72:27:170:0.439:2	0/1:91,60:26:154:0.397:2	./.	0/1:76,47:27:123:0.382:2	./.
chr6	52878654	rs33936662	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,44:29:118:0.373:2	./.
chr6	52993002	rs13200319	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:32:7:0.571:2	./.
chr6	53159090	rs2294857	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:38,53:30:91:0.582:2	0/1:22,22:29:44:0.500:2	./.	./.	./.	./.	0/1:55,54:30:109:0.495:2	./.	0/1:75,82:30:157:0.522:2	./.	./.
chr6	53364928	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:34:152:0.026:2	./.	./.
chr6	53516876	rs6928338	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:31:2:1.00:2	0/1:0,6:29:6:1.00:2	./.	./.	0/1:0,3:32:3:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,4:29:4:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,2:29:2:1.00:2	./.	0/1:0,3:33:3:1.00:2
chr6	53517035	rs3823111	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,41:31:89:0.461:2	./.	./.	./.
chr6	53519062	rs10948758	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,79:33:149:0.530:2	0/1:35,46:32:81:0.568:2	0/1:8,7:33:15:0.467:2	0/1:0,160:33:160:1.00:2	0/1:49,74:32:123:0.602:2	0/1:2,126:33:128:0.984:2	./.	0/1:70,84:32:154:0.545:2	0/1:0,190:34:190:1.00:2	0/1:0,124:32:125:1.00:2	0/1:0,166:33:166:1.00:2
chr6	53519605	rs3799260	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,22:32:42:0.524:2	0/1:13,15:31:28:0.536:2	0/1:5,3:30:8:0.375:2	0/1:0,26:30:26:1.00:2	0/1:28,17:31:45:0.378:2	0/1:0,35:30:35:1.00:2	./.	0/1:0,33:30:33:1.00:2	0/1:0,38:32:38:1.00:2	0/1:1,21:30:22:0.955:2	0/1:0,42:31:43:1.00:2
chr6	53519857	rs12210809	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:78,35:32:113:0.310:2	0/1:27,30:32:57:0.526:2	./.	0/1:2,150:32:152:0.987:2	0/1:50,37:32:87:0.425:2	0/1:2,131:32:133:0.985:2	./.	0/1:67,61:32:128:0.477:2	0/1:1,119:32:120:0.992:2	0/1:3,103:32:106:0.972:2	0/1:0,134:32:134:1.00:2
chr6	53762092	rs9349688	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:9,6:29:15:0.400:2	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.	0/1:7,3:32:10:0.300:2	./.	0/1:6,10:33:16:0.625:2	./.	./.
chr6	53778661	rs201915048	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,5:25:30:0.167:2	./.	./.	./.	./.	0/1:23,4:24:27:0.148:2
chr6	53883843	rs17625497	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,20:32:56:0.357:2	./.	./.	0/1:1,56:33:57:0.982:2
chr6	53989526	rs4712056	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,14:30:26:0.538:2	0/1:2,26:28:28:0.929:2	0/1:15,6:29:21:0.286:2	0/1:17,9:30:26:0.346:2	0/1:0,26:28:26:1.00:2	0/1:12,12:30:24:0.500:2	0/1:10,10:29:20:0.500:2	0/1:19,15:30:34:0.441:2
chr6	54025155	rs10484648	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,27:33:66:0.409:2	0/1:22,15:32:37:0.405:2	./.	./.	./.	0/1:32,25:32:57:0.439:2	0/1:24,16:33:40:0.400:2	./.	0/1:34,41:34:75:0.547:2	./.	./.
chr6	54054686	rs6934690	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,27:32:65:0.415:2	0/1:24,19:32:43:0.442:2	0/1:0,13:31:13:1.00:2	0/1:2,86:32:88:0.977:2	0/1:0,55:31:55:1.00:2	0/1:42,26:31:68:0.382:2	0/1:34,22:32:56:0.393:2	0/1:0,80:32:80:1.00:2	0/1:36,37:32:73:0.507:2	0/1:0,70:32:70:1.00:2	0/1:0,107:31:107:1.00:2
chr6	54095524	rs2275769	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,45:30:94:0.479:2	0/1:27,30:32:57:0.526:2	./.	./.	./.	0/1:38,36:30:74:0.486:2	0/1:70,52:30:122:0.426:2	./.	0/1:50,37:30:87:0.425:2	./.	./.
chr6	54172879	rs1340660	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,46:32:104:0.442:2	./.	./.	./.	./.	./.	0/1:32,52:32:84:0.619:2	0/1:50,67:32:117:0.573:2
chr6	54173381	rs144064742	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,33:30:63:0.532:2	./.	./.	./.	./.	./.	./.	./.
chr6	54173413	rs2297980	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,37:29:78:0.474:2	./.	./.	./.	./.	./.	0/1:44,39:29:83:0.470:2	0/1:59,45:30:105:0.433:2
chr6	54186147	rs1058768	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:33:46:1.00:2	0/1:0,37:32:37:1.00:2	0/1:4,3:32:7:0.429:2	0/1:26,31:31:57:0.544:2	0/1:0,27:31:27:1.00:2	0/1:45,32:32:77:0.416:2	0/1:19,16:32:35:0.457:2	0/1:2,61:32:63:0.968:2	./.	0/1:0,49:33:49:1.00:2	./.
chr6	54191686	rs41276062	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,10:33:18:0.556:2	./.	./.	./.	./.	./.	./.	./.	0/1:66,57:33:123:0.463:2
chr6	54191970	rs1848440	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,23:32:25:0.920:2	0/1:0,28:31:28:1.00:2	0/1:0,2:31:2:1.00:2	0/1:15,24:31:39:0.615:2	0/1:0,28:31:28:1.00:2	0/1:20,24:31:44:0.545:2	0/1:14,8:31:22:0.364:2	0/1:0,44:32:44:1.00:2	./.	0/1:0,43:30:43:1.00:2	0/1:23,24:32:47:0.511:2
chr6	54219326	rs3195579	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:32:10:0.300:2	./.	./.	0/1:30,26:32:56:0.464:2	./.	./.	./.	./.	0/1:39,53:33:92:0.576:2
chr6	54254589	rs3736352	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:33:16:0.375:2	0/1:5,6:32:11:0.545:2	./.	./.	./.	0/1:9,7:32:16:0.438:2	./.	./.	./.	./.	./.
chr6	54254663	rs139720660	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,21:32:34:0.618:2	./.	./.	./.	./.	./.
chr6	54735122	rs1472679	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:57,59:33:116:0.509:2	0/1:43,40:32:83:0.482:2	./.	0/1:78,52:32:130:0.400:2	0/1:66,84:32:150:0.560:2	./.	0/1:58,68:32:126:0.540:2	0/1:0,165:32:165:1.00:2	0/1:96,58:34:154:0.377:2	0/1:1,117:33:118:0.992:2	0/1:91,61:32:152:0.401:2
chr6	54735344	rs16886105	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,51:32:101:0.505:2	./.	./.	./.	./.	./.
chr6	54735383	rs73742854	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,44:32:80:0.550:2	./.	./.	./.	./.	./.	./.	./.
chr6	54804605	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:33:183:0.022:2
chr6	54804920	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:32:82:0.049:2	./.	./.	./.	./.	./.
chr6	54805074	rs9475076	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,20:31:34:0.588:2	./.	./.	./.	./.	./.	./.	./.
chr6	54805688	rs239798	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:14,17:32:31:0.548:2	0/1:7,8:31:15:0.533:2	./.	0/1:20,13:32:34:0.394:2	./.	0/1:18,13:31:31:0.419:2	./.	./.	./.	./.	0/1:21,25:32:46:0.543:2
chr6	54806379	rs17678648	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,28:30:56:0.500:2	0/1:27,16:30:43:0.372:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,35:29:86:0.407:2
chr6	54806489	rs9475077	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:22,29:31:52:0.569:2	0/1:48,11:31:59:0.186:2	./.	0/1:35,27:31:62:0.435:2	./.	0/1:23,31:31:54:0.574:2	./.	./.	./.	./.	0/1:35,27:31:62:0.435:2
chr6	54806690	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:32:101:0.040:2	./.	./.	./.
chr6	54806692	rs200763981	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,9:14:56:0.161:2	./.	./.	0/1:61,13:18:75:0.176:2	./.	./.	0/1:69,7:18:76:0.092:2
chr6	55039416	rs41271312	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,42:31:102:0.412:2
chr6	55142261	rs12111299	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,46:31:85:0.541:2	./.	./.	./.	./.	./.	./.	./.
chr6	55142337	rs2653349	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:32:70:1.00:2	0/1:0,48:31:48:1.00:2	0/1:5,4:32:9:0.444:2	0/1:0,92:32:92:1.00:2	0/1:0,93:31:93:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,109:32:109:1.00:2	0/1:0,136:33:136:1.00:2	0/1:0,94:31:94:1.00:2	0/1:0,111:33:111:1.00:2
chr6	55145128	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:32:121:0.033:2	./.	./.	./.	./.	./.
chr6	55196575	rs116111965	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,52:32:97:0.536:2	./.	./.	./.
chr6	55196587	rs12199003	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,52:33:52:1.00:2	0/1:0,32:32:32:1.00:2	./.	0/1:30,36:32:66:0.545:2	./.	0/1:28,33:31:61:0.541:2	0/1:49,18:32:67:0.269:2	./.	0/1:50,31:33:81:0.383:2	0/1:32,18:33:50:0.360:2	0/1:0,82:33:82:1.00:2
chr6	55198696	rs116685319	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,17:33:30:0.567:2	./.	./.	./.
chr6	55214895	rs147652095	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,4:33:18:0.222:2	./.	./.	./.
chr6	55214932	rs115053739	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,6:32:23:0.261:2	./.	./.	./.
chr6	55216194	rs142171356	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,21:32:166:0.127:2	./.	./.	./.	./.
chr6	55216344	rs146300118	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,30:31:67:0.448:2	./.	./.	./.
chr6	55266625	rs9370418	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,31:32:64:0.484:2	0/1:23,16:32:39:0.410:2	0/1:0,3:33:3:1.00:2	0/1:0,84:31:84:1.00:2	0/1:16,16:32:32:0.500:2	0/1:24,19:32:43:0.442:2	0/1:21,34:32:55:0.618:2	0/1:0,32:32:32:1.00:2	0/1:32,31:32:63:0.492:2	0/1:0,53:32:53:1.00:2	./.
chr6	55639028	rs41271330	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,6:31:10:0.600:2	0/1:67,57:31:124:0.460:2	./.	./.	./.	./.	./.	./.	./.
chr6	55739284	rs148766592	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,8:30:24:0.333:2	./.	./.	./.	./.	0/1:97,92:31:189:0.487:2	./.	./.	./.
chr6	55739553	rs3734444	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,28:32:28:1.00:2	0/1:0,12:32:12:1.00:2	./.	0/1:14,20:33:34:0.588:2	0/1:5,9:31:14:0.643:2	./.	./.	./.	0/1:0,36:34:36:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,22:32:22:1.00:2
chr6	55925801	rs9464337	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,16:32:44:0.364:2	0/1:13,9:30:22:0.409:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,25:30:66:0.379:2
chr6	55929347	rs2235735	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,8:32:8:1.00:2	0/1:15,16:33:31:0.516:2	0/1:0,12:32:12:1.00:2	0/1:24,18:30:42:0.429:2	0/1:19,15:34:34:0.441:2	0/1:17,12:32:29:0.414:2	0/1:22,11:32:33:0.333:2	0/1:26,16:29:42:0.381:2	0/1:31,22:32:53:0.415:2
chr6	55935617	rs41271338	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,35:33:87:0.402:2	./.
chr6	55988870	rs192244210	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:9,12:30:21:0.571:2	0/1:16,8:26:24:0.333:2	./.	./.	0/1:12,9:28:21:0.429:2	./.	./.	./.	./.	./.	./.
chr6	55988932	rs41271844	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,3:31:23:0.130:2	./.	./.	./.	./.	0/1:24,11:30:35:0.314:2	0/1:37,23:28:60:0.383:2
chr6	56031712	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:31:73:0.055:2	./.	./.	./.	./.	./.
chr6	56033094	rs35471617	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,13:32:34:0.382:2	./.
chr6	56044578	rs2038149	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,99:32:186:0.532:2	0/1:108,81:32:189:0.429:2	0/1:0,53:32:54:1.00:2	0/1:110,83:32:193:0.430:2	0/1:0,191:32:191:1.00:2	0/1:104,90:32:195:0.464:2	0/1:116,81:32:197:0.411:2	0/1:92,102:33:194:0.526:2	0/1:113,79:33:192:0.411:2	0/1:1,188:32:189:0.995:2	./.
chr6	56327849	rs11758339	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,43:30:116:0.371:2	0/1:76,60:30:136:0.441:2	./.	./.	0/1:74,59:32:133:0.444:2	./.	0/1:54,62:32:116:0.534:2
chr6	56327856	rs144012429	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,58:31:134:0.436:2
chr6	56373536	rs41271862	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,49:30:119:0.412:2	./.	./.	0/1:68,66:31:134:0.493:2	./.
chr6	56417095	rs180765536	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,55:32:118:0.466:2	./.	./.	./.
chr6	56417282	rs4715630	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,98:32:98:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,111:31:111:1.00:2	0/1:43,39:31:82:0.476:2	0/1:54,58:31:113:0.518:2	0/1:2,79:31:81:0.975:2	0/1:0,75:31:75:1.00:2	0/1:71,43:32:114:0.377:2	0/1:1,62:31:63:0.984:2	0/1:65,60:32:125:0.480:2
chr6	56417545	rs4715631	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,11:32:11:1.00:2	0/1:0,12:31:12:1.00:2	./.	0/1:0,18:32:18:1.00:2	0/1:11,7:30:18:0.389:2	0/1:13,15:32:28:0.536:2	0/1:0,15:32:15:1.00:2	0/1:1,13:31:14:0.929:2	0/1:6,3:34:9:0.333:2	0/1:0,6:33:6:1.00:2	./.
chr6	56417688	rs112177059	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:34:48:0.083:2	./.
chr6	56418281	rs191081991	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,33:31:61:0.541:2	./.	./.	./.
chr6	56420158	rs62621210	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,71:32:161:0.444:2
chr6	56420538	rs11756977	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,50:31:111:0.450:2	0/1:75,63:31:138:0.457:2	./.	./.	0/1:79,82:33:161:0.509:2	./.	0/1:0,160:32:160:1.00:2
chr6	56425148	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:34:121:0.033:2	./.	./.	./.
chr6	56426931	rs9367689	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,8:32:27:0.296:2	0/1:15,3:33:18:0.167:2	./.	0/1:19,15:31:34:0.441:2	0/1:16,4:32:20:0.200:2	0/1:21,10:31:31:0.323:2	./.	0/1:14,14:31:28:0.500:2	0/1:10,15:33:25:0.600:2	./.	0/1:0,25:31:25:1.00:2
chr6	56463410	rs4712138	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,40:29:86:0.465:2	0/1:43,40:29:83:0.482:2	./.	0/1:87,56:30:143:0.392:2	0/1:50,35:28:85:0.412:2	0/1:68,57:29:125:0.456:2	./.	0/1:77,53:29:130:0.408:2	0/1:99,51:30:150:0.340:2	./.	0/1:81,70:29:151:0.464:2
chr6	56470551	rs13194995	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,35:32:71:0.493:2	0/1:19,15:32:34:0.441:2	./.	0/1:35,33:32:68:0.485:2	0/1:25,23:31:48:0.479:2	0/1:48,38:31:86:0.442:2	./.	0/1:28,38:30:66:0.576:2	./.	./.	0/1:47,40:32:87:0.460:2
chr6	56470690	rs13209548	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:45,30:31:75:0.400:2	0/1:19,22:31:41:0.537:2	./.	0/1:39,31:32:70:0.443:2	0/1:27,32:30:59:0.542:2	0/1:50,42:31:92:0.457:2	./.	0/1:44,49:31:93:0.527:2	./.	./.	0/1:0,101:32:101:1.00:2
chr6	56471402	rs9382658	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:56,49:32:105:0.467:2	0/1:47,26:31:73:0.356:2	./.	0/1:63,64:32:127:0.504:2	0/1:48,26:32:74:0.351:2	0/1:66,37:31:103:0.359:2	./.	0/1:54,40:31:94:0.426:2	./.	./.	0/1:0,139:32:139:1.00:2
chr6	56471615	rs45442999	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,27:31:66:0.409:2
chr6	56471650	rs45564536	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,48:31:116:0.414:2	./.	./.	0/1:32,38:32:70:0.543:2	./.
chr6	56471995	rs16888055	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:79,54:31:133:0.406:2	0/1:28,33:31:61:0.541:2	./.	0/1:63,74:31:137:0.540:2	0/1:50,34:31:84:0.405:2	0/1:62,46:30:108:0.426:2	./.	0/1:56,76:31:132:0.576:2	./.	./.	0/1:81,76:31:157:0.484:2
chr6	56472642	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,38:34:63:0.603:2
chr6	56480500	rs150191284	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,63:29:128:0.492:2
chr6	56481194	rs185386366	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,9:31:18:0.500:2	./.	./.	./.	./.
chr6	56481632	rs115542549	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,26:29:53:0.491:2
chr6	56482801	rs6459166	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:64,64:33:128:0.500:2	0/1:27,28:32:55:0.509:2	./.	0/1:59,51:33:111:0.464:2	0/1:44,36:32:80:0.450:2	0/1:68,63:33:131:0.481:2	./.	0/1:67,55:32:122:0.451:2	0/1:70,72:34:142:0.507:2	./.	0/1:2,140:32:142:0.986:2
chr6	56482923	rs141573097	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,27:33:71:0.380:2	./.	./.	./.	./.
chr6	56484758	rs2230862	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:87,76:32:163:0.466:2	0/1:74,67:32:141:0.475:2	./.	0/1:104,74:31:179:0.416:2	0/1:121,65:31:186:0.349:2	0/1:125,54:31:179:0.302:2	./.	0/1:108,74:31:182:0.407:2	./.	./.	0/1:2,192:31:194:0.990:2
chr6	56485023	rs35497571	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:29,26:33:55:0.473:2	0/1:7,8:32:15:0.533:2	./.	./.	./.	./.	./.	./.	./.	0/1:21,20:33:41:0.488:2	./.
chr6	56494071	rs112640831	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,72:29:192:0.375:2
chr6	56499410	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:30:78:0.051:2	./.
chr6	56504278	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:33:113:0.035:2	./.
chr6	56505063	rs2144407	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,40:33:82:0.488:2
chr6	56507489	rs1024196	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,63:29:157:0.404:2
chr6	56515787	rs41267673	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,38:33:98:0.388:2
chr6	56569104	rs16888128	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,28:34:64:0.438:2	./.	0/1:43,30:31:73:0.411:2	./.	0/1:33,30:33:63:0.476:2	0/1:35,34:35:69:0.493:2	./.	0/1:36,28:34:64:0.438:2
chr6	56911574	rs9382680	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,63:33:158:0.399:2	0/1:124,54:31:178:0.303:2	0/1:104,59:33:163:0.362:2	./.	./.	0/1:0,120:33:121:1.00:2	0/1:131,45:32:176:0.256:2	0/1:128,41:32:169:0.243:2
chr6	56917520	rs36113897	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,20:32:27:0.741:2	./.	./.	./.	./.	./.	./.
chr6	56917538	rs6926980	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,9:31:29:0.310:2	0/1:24,11:30:35:0.314:2	0/1:16,9:30:25:0.360:2	./.	./.	0/1:0,31:32:31:1.00:2	0/1:20,5:29:25:0.200:2	0/1:24,34:30:58:0.586:2
chr6	56917553	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,17:32:36:0.472:2	./.	./.	./.	./.
chr6	56918647	rs61740373	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,5:33:15:0.333:2	./.	./.	./.	./.	./.
chr6	56919443	rs61740375	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,24:27:46:0.522:2	./.	./.	./.	./.	0/1:24,40:30:64:0.625:2	./.
chr6	56965696	rs3800023	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,9:33:17:0.529:2	./.	0/1:21,15:32:36:0.417:2	./.	./.	0/1:0,25:32:25:1.00:2	./.	0/1:15,12:33:27:0.444:2
chr6	57012930	rs3734738	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,20:32:66:0.303:2	0/1:28,19:32:47:0.404:2	0/1:30,33:31:63:0.524:2	./.	./.	0/1:0,79:32:79:1.00:2	0/1:46,32:32:78:0.410:2	0/1:32,43:31:75:0.573:2
chr6	57055354	rs1040461	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,35:31:76:0.461:2	./.	./.	./.	./.	0/1:58,48:32:106:0.453:2	./.
chr6	57244780	rs5011403	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,10:33:26:0.385:2	0/1:17,18:33:35:0.514:2	./.	0/1:13,24:31:37:0.649:2	0/1:12,15:32:27:0.556:2	0/1:13,22:32:35:0.629:2	0/1:21,12:31:33:0.364:2	0/1:24,16:33:40:0.400:2	0/1:25,18:33:43:0.419:2	0/1:21,20:33:41:0.488:2	0/1:16,20:31:36:0.556:2
chr6	57246847	rs2230042	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,3:31:29:0.103:2	./.	0/1:144,54:31:198:0.273:2	./.	./.	./.	./.	0/1:123,70:32:193:0.363:2	./.
chr6	57246884	rs6913546	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:90,86:32:176:0.489:2	0/1:85,69:32:154:0.448:2	0/1:16,15:32:31:0.484:2	0/1:112,77:33:189:0.407:2	0/1:110,84:31:194:0.433:2	0/1:110,83:32:193:0.430:2	0/1:100,68:33:168:0.405:2	0/1:104,91:32:195:0.467:2	0/1:98,77:33:175:0.440:2	0/1:111,59:32:170:0.347:2	0/1:115,84:32:199:0.422:2
chr6	57372324	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:32:136:0.029:2	./.
chr6	57372338	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:32:116:0.034:2	./.	./.	./.	./.	./.
chr6	57372361	rs9382770	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,55:32:93:0.591:2	0/1:23,44:31:67:0.657:2	0/1:5,6:31:11:0.545:2	0/1:36,71:31:107:0.664:2	0/1:52,54:31:106:0.509:2	0/1:38,55:30:93:0.591:2	0/1:38,56:31:94:0.596:2	0/1:38,68:31:106:0.642:2	0/1:37,59:32:96:0.615:2	0/1:29,54:31:83:0.651:2	0/1:46,87:32:133:0.654:2
chr6	57372365	rs9396315	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,13:32:94:0.138:2	0/1:58,7:31:65:0.108:2	0/1:6,3:33:9:0.333:2	0/1:95,7:32:102:0.069:2	0/1:89,14:32:103:0.136:2	./.	0/1:65,25:33:90:0.278:2	0/1:93,13:32:106:0.123:2	./.	0/1:74,10:32:84:0.119:2	0/1:115,18:33:134:0.135:2
chr6	57393112	rs11964288	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,5:32:17:0.294:2	./.	0/1:15,4:32:19:0.211:2	0/1:14,5:31:19:0.263:2	./.	0/1:31,7:33:38:0.184:2
chr6	57393125	rs927192	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:10,14:32:24:0.583:2	0/1:12,3:33:15:0.200:2	./.	0/1:7,5:32:12:0.417:2	./.	0/1:12,10:32:22:0.455:2	0/1:8,4:33:12:0.333:2	0/1:13,13:33:26:0.500:2	0/1:18,13:34:31:0.419:2	0/1:9,9:33:18:0.500:2	0/1:16,23:33:39:0.590:2
chr6	57393144	rs3763183	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,10:34:45:0.222:2	./.	0/1:46,7:30:53:0.132:2
chr6	57393160	rs76686926	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,8:30:34:0.235:2	./.	./.	./.	./.	0/1:37,4:31:41:0.098:2	./.	0/1:27,8:32:35:0.229:2	0/1:48,4:31:52:0.077:2	0/1:30,3:32:33:0.091:2	0/1:46,13:32:59:0.220:2
chr6	57398154	rs80081867	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:91,15:32:106:0.142:2	0/1:61,8:31:69:0.116:2	./.	0/1:124,10:32:134:0.075:2	0/1:72,4:32:76:0.053:2	0/1:105,10:32:115:0.087:2	0/1:83,6:31:89:0.067:2	0/1:103,13:31:117:0.112:2	0/1:115,9:32:124:0.073:2	0/1:98,9:32:107:0.084:2	0/1:119,21:32:140:0.150:2
chr6	57398157	rs9476080	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:90,16:32:106:0.151:2	0/1:63,8:32:71:0.113:2	./.	0/1:127,10:30:137:0.073:2	0/1:74,4:33:78:0.051:2	0/1:104,11:31:115:0.096:2	0/1:83,7:31:90:0.078:2	0/1:103,13:33:116:0.112:2	0/1:116,9:32:125:0.072:2	0/1:102,9:33:111:0.081:2	0/1:118,21:33:141:0.151:2
chr6	57398163	rs9476081	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:97,31:28:128:0.242:2	0/1:61,11:28:72:0.153:2	./.	0/1:120,17:29:137:0.124:2	0/1:81,14:28:95:0.147:2	0/1:108,15:28:124:0.122:2	0/1:83,11:31:94:0.117:2	0/1:100,25:29:125:0.200:2	0/1:106,19:31:125:0.152:2	0/1:101,21:29:122:0.172:2	0/1:114,34:29:148:0.230:2
chr6	57398201	rs62398997	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:84,34:30:118:0.288:2	0/1:51,19:29:70:0.271:2	./.	0/1:113,17:29:130:0.131:2	0/1:106,37:29:143:0.259:2	0/1:113,20:29:133:0.150:2	0/1:96,32:30:128:0.250:2	0/1:85,31:29:116:0.267:2	0/1:105,25:30:130:0.192:2	0/1:105,23:29:128:0.180:2	0/1:101,32:29:133:0.241:2
chr6	57398264	rs62398998	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:64,45:32:109:0.413:2	0/1:32,44:31:76:0.579:2	./.	0/1:68,58:32:126:0.460:2	0/1:58,44:32:102:0.431:2	0/1:53,35:33:88:0.398:2	0/1:65,44:32:109:0.404:2	0/1:50,47:31:97:0.485:2	0/1:49,49:31:98:0.500:2	0/1:43,49:32:92:0.533:2	0/1:70,65:32:135:0.481:2
chr6	57398270	rs62398999	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:96,13:30:109:0.119:2	0/1:58,16:31:74:0.216:2	./.	0/1:99,26:30:125:0.208:2	0/1:88,7:30:95:0.074:2	0/1:77,9:30:86:0.105:2	0/1:90,7:29:97:0.072:2	0/1:74,20:30:94:0.213:2	0/1:72,18:30:90:0.200:2	0/1:68,23:30:91:0.253:2	0/1:103,29:29:132:0.220:2
chr6	57467084	rs9885913	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:119,7:33:126:0.056:2	./.	./.	0/1:100,6:28:106:0.057:2	./.	0/1:117,5:32:122:0.041:2	./.	0/1:118,6:31:124:0.048:2	./.	0/1:94,5:28:99:0.051:2	./.
chr6	57467093	rs9885916	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:116,9:32:125:0.072:2	./.	./.	0/1:103,6:33:109:0.055:2	./.	0/1:114,5:32:119:0.042:2	./.	0/1:118,6:32:125:0.048:2	./.	0/1:98,6:32:104:0.058:2	0/1:110,8:31:118:0.068:2
chr6	57467100	rs4535533	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,59:33:130:0.454:2	0/1:34,28:32:62:0.452:2	0/1:3,8:32:11:0.727:2	0/1:51,57:32:108:0.528:2	0/1:43,17:31:60:0.283:2	0/1:66,53:32:119:0.445:2	0/1:66,41:32:107:0.383:2	0/1:65,62:32:127:0.488:2	0/1:72,68:33:140:0.486:2	0/1:51,50:33:101:0.495:2	0/1:52,65:32:117:0.556:2
chr6	57467107	rs9885751	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:129,10:32:139:0.072:2	./.	./.	0/1:110,11:33:121:0.091:2	0/1:61,7:33:68:0.103:2	0/1:119,10:32:129:0.078:2	0/1:110,14:33:124:0.113:2	0/1:119,12:33:131:0.092:2	0/1:146,7:34:153:0.046:2	0/1:98,8:33:106:0.075:2	0/1:104,11:33:115:0.096:2
chr6	57467175	rs4406234	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:76,46:31:122:0.377:2	0/1:38,20:30:58:0.345:2	./.	0/1:92,30:32:122:0.246:2	0/1:66,17:32:83:0.205:2	0/1:82,33:31:115:0.287:2	0/1:78,22:31:100:0.220:2	0/1:102,33:31:135:0.244:2	0/1:99,38:31:137:0.277:2	0/1:68,39:32:107:0.364:2	0/1:84,45:31:130:0.349:2
chr6	57499035	rs61753605	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,9:29:61:0.148:2	./.	./.	./.
chr6	57512476	rs4307164	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,73:32:161:0.453:2	0/1:71,74:32:145:0.510:2	0/1:22,17:31:39:0.436:2	0/1:100,80:31:181:0.444:2	0/1:68,63:31:131:0.481:2	0/1:108,87:30:195:0.446:2	0/1:100,83:31:183:0.454:2	0/1:115,67:31:182:0.368:2	0/1:91,69:31:160:0.431:2	0/1:85,86:32:172:0.503:2	0/1:86,78:31:164:0.476:2
chr6	57512510	rs4294007	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,152:33:155:0.981:2	0/1:2,150:32:152:0.987:2	0/1:17,29:32:46:0.630:2	0/1:0,171:33:171:1.00:2	0/1:37,111:32:148:0.750:2	0/1:55,127:32:182:0.698:2	0/1:53,127:32:180:0.706:2	0/1:1,172:32:173:0.994:2	0/1:38,104:33:142:0.732:2	0/1:35,130:32:165:0.788:2	0/1:51,91:33:142:0.641:2
chr6	57512529	rs5001076	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:135,25:33:160:0.156:2	0/1:129,21:32:150:0.140:2	0/1:37,3:32:40:0.075:2	0/1:124,32:33:156:0.205:2	0/1:122,20:32:142:0.141:2	0/1:140,30:32:170:0.176:2	0/1:150,29:32:179:0.162:2	0/1:140,30:32:170:0.176:2	0/1:122,18:33:140:0.129:2	0/1:129,24:33:153:0.157:2	0/1:139,28:34:167:0.168:2
chr6	57512565	rs4294008	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,72:32:150:0.480:2	0/1:55,55:32:110:0.500:2	0/1:14,12:30:26:0.462:2	0/1:71,79:32:150:0.527:2	0/1:34,56:32:90:0.622:2	0/1:52,66:32:118:0.559:2	0/1:56,48:32:104:0.462:2	0/1:64,64:32:128:0.500:2	0/1:58,64:32:122:0.525:2	0/1:48,64:32:112:0.571:2	0/1:70,90:32:160:0.563:2
chr6	57512678	rs4398719	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,49:33:103:0.476:2	0/1:20,35:33:55:0.636:2	0/1:17,5:32:22:0.227:2	0/1:70,52:33:122:0.426:2	0/1:32,26:30:58:0.448:2	0/1:46,48:32:94:0.511:2	0/1:33,29:32:62:0.468:2	0/1:48,34:33:82:0.415:2	0/1:56,67:33:123:0.545:2	0/1:36,33:33:69:0.478:2	0/1:54,77:33:131:0.588:2
chr6	62390916	rs1204114	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,62:33:136:0.456:2	0/1:23,21:33:44:0.477:2	0/1:20,5:33:25:0.200:2	0/1:108,65:33:173:0.376:2	0/1:87,49:32:136:0.360:2	0/1:0,116:33:116:1.00:2	0/1:0,111:33:111:1.00:2	0/1:95,74:32:169:0.438:2	0/1:0,147:34:147:1.00:2	0/1:57,58:33:115:0.504:2	0/1:0,121:33:121:1.00:2
chr6	62442604	rs10484690	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:54,33:29:87:0.379:2	0/1:24,26:29:50:0.520:2	./.	0/1:61,42:29:103:0.408:2	0/1:60,52:29:112:0.464:2	./.	./.	0/1:87,67:29:154:0.435:2	./.	0/1:51,40:29:91:0.440:2	./.
chr6	62604608	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:30:13:0.385:2	./.	./.	./.	./.	./.	./.	./.
chr6	62887099	rs6921170	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,12:32:28:0.429:2	0/1:8,9:32:17:0.529:2	0/1:0,3:31:3:1.00:2	0/1:22,18:31:40:0.450:2	0/1:0,20:31:20:1.00:2	0/1:0,34:30:34:1.00:2	0/1:1,30:31:31:0.968:2	./.	0/1:0,34:33:34:1.00:2	0/1:2,35:31:37:0.946:2	0/1:16,28:33:44:0.636:2
chr6	63921545	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,5:33:195:0.026:2	./.	./.	./.	./.	./.	./.	0/1:186,5:32:191:0.026:2
chr6	63921853	rs9350793	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:86,29:30:115:0.252:2	0/1:34,28:30:62:0.452:2	0/1:13,8:32:21:0.381:2	./.	0/1:1,94:30:95:0.989:2	0/1:77,56:30:133:0.421:2	0/1:71,53:29:124:0.427:2	0/1:76,57:29:133:0.429:2	0/1:2,116:30:118:0.983:2	0/1:88,50:30:138:0.362:2	0/1:4,144:28:148:0.973:2
chr6	63921873	rs9359356	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:76,35:32:111:0.315:2	0/1:32,22:32:54:0.407:2	0/1:12,4:32:16:0.250:2	./.	0/1:0,74:31:74:1.00:2	0/1:79,52:32:131:0.397:2	0/1:69,48:33:117:0.410:2	0/1:74,53:31:127:0.417:2	0/1:2,109:33:111:0.982:2	0/1:89,46:33:135:0.341:2	0/1:3,149:32:152:0.980:2
chr6	63921924	rs9359357	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,47:29:116:0.405:2	0/1:36,26:29:62:0.419:2	0/1:9,6:29:15:0.400:2	0/1:0,111:30:111:1.00:2	0/1:0,44:29:44:1.00:2	0/1:74,59:29:133:0.444:2	0/1:66,31:30:97:0.320:2	0/1:0,100:30:100:1.00:2	0/1:0,82:30:82:1.00:2	0/1:84,50:30:134:0.373:2	0/1:0,125:30:125:1.00:2
chr6	63922023	rs9343847	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:118,68:33:186:0.366:2	0/1:57,52:32:109:0.477:2	0/1:13,16:32:29:0.552:2	./.	0/1:2,89:31:91:0.978:2	./.	0/1:97,50:32:147:0.340:2	0/1:108,55:32:163:0.337:2	0/1:2,188:33:190:0.989:2	./.	0/1:2,186:32:188:0.989:2
chr6	63922282	rs9361465	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:20,34:32:54:0.630:2	0/1:12,9:32:21:0.429:2	./.	./.	./.	./.	./.	0/1:48,25:31:73:0.342:2	./.	./.	./.
chr6	63922314	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:32:124:0.033:2
chr6	63922696	rs9448593	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,3:33:60:0.050:2	./.	./.	./.
chr6	63922820	rs45443197	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,73:30:76:0.961:2	./.	./.	./.	0/1:61,47:31:108:0.435:2	./.	./.	./.
chr6	63922916	rs10943601	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,7:27:11:0.636:2	./.	./.	0/1:26,3:31:29:0.103:2	0/1:0,9:27:9:1.00:2	./.	0/1:5,4:28:9:0.444:2	0/1:9,8:27:17:0.471:2	0/1:0,14:28:14:1.00:2	./.	0/1:0,15:27:15:1.00:2
chr6	63990094	rs3846795	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,13:31:29:0.448:2	./.	./.	./.	./.	./.
chr6	64288361	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,6:34:88:0.068:2	./.	./.	./.	./.
chr6	64289210	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,5:30:196:0.026:2
chr6	64404591	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:27:56:0.071:2	./.
chr6	64421575	rs146289538	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,63:32:100:0.630:2	./.	./.	./.
chr6	64422941	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:33:47:0.085:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	64498055	rs66462731	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,8:33:32:0.250:2	./.	./.	./.	./.	./.	./.
chr6	64694354	rs4710457	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,14:32:25:0.560:2	./.	./.	./.	0/1:104,92:32:196:0.469:2	./.	0/1:98,93:32:191:0.487:2	0/1:89,74:32:163:0.454:2	./.
chr6	65098515	rs36133910	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.
chr6	65149185	rs9353806	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:39,17:32:57:0.304:2	0/1:29,13:32:42:0.310:2	./.	./.	./.	./.	0/1:2,28:32:30:0.933:2	./.	0/1:30,22:33:52:0.423:2	0/1:23,26:32:49:0.531:2	./.
chr6	65300143	rs16895517	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,46:31:86:0.535:2	./.	./.	./.	./.	./.	./.
chr6	65300250	rs199689193	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,35:30:64:0.547:2	./.
chr6	65300516	rs57312007	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,28:34:66:0.424:2	./.	./.
chr6	65301167	rs62415825	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,38:31:88:0.432:2	./.	./.	./.	./.	./.	./.
chr6	65301211	rs62415826	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,22:29:55:0.400:2	./.	./.	./.	./.	./.	./.
chr6	65301217	rs62415827	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,18:32:46:0.391:2	./.	./.	./.	./.	./.	./.
chr6	65301408	rs62415828	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,13:32:29:0.448:2	./.	./.	./.	./.	./.	./.
chr6	65301504	rs624851	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,28:32:28:1.00:2	0/1:1,36:32:37:0.973:2	./.	0/1:27,19:33:46:0.413:2	0/1:19,13:32:32:0.406:2	0/1:7,28:32:35:0.800:2	0/1:1,30:33:31:0.968:2	0/1:0,31:32:31:1.00:2	0/1:0,28:34:28:1.00:2	0/1:15,20:33:35:0.571:2	0/1:24,15:32:39:0.385:2
chr6	65301679	rs17403955	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,39:32:94:0.415:2	./.	./.	./.	./.	./.	./.
chr6	65301734	rs12663619	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,28:32:55:0.509:2	./.	./.	./.	./.	./.	./.
chr6	65301787	rs12663622	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,37:29:83:0.446:2	./.	./.	./.	./.	./.	./.
chr6	65301824	rs12662610	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,29:28:70:0.414:2	./.	./.	./.	./.	./.	./.
chr6	65301854	rs12663916	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,16:30:41:0.390:2	./.	./.	./.	./.	./.	./.
chr6	65303100	rs17404123	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,19:31:41:0.463:2	./.	./.	./.	./.	./.	./.
chr6	65336143	rs9445051	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,30:32:71:0.423:2	./.	./.	./.	0/1:53,53:33:106:0.500:2	./.	0/1:63,47:33:110:0.427:2
chr6	65622463	rs9294631	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:84,75:33:159:0.472:2	0/1:66,70:32:136:0.515:2	0/1:9,17:32:26:0.654:2	0/1:102,76:33:178:0.427:2	0/1:84,90:33:175:0.517:2	0/1:86,73:33:159:0.459:2	0/1:91,80:33:171:0.468:2	0/1:0,151:33:151:1.00:2	0/1:0,159:34:159:1.00:2	0/1:87,79:33:166:0.476:2	0/1:0,146:33:146:1.00:2
chr6	66005857	rs17411795	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,41:31:87:0.471:2	./.	./.	./.	./.	0/1:69,61:32:130:0.469:2	./.	0/1:57,41:32:98:0.418:2
chr6	66005888	rs9342464	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:33:71:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,16:32:16:1.00:2	0/1:38,44:33:82:0.537:2	0/1:0,73:32:73:1.00:2	0/1:42,36:31:78:0.462:2	0/1:46,32:33:78:0.410:2	./.	0/1:53,53:33:106:0.500:2	./.	0/1:36,45:33:81:0.556:2
chr6	66005970	rs9345601	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:31:31:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,9:31:9:1.00:2	0/1:31,39:30:70:0.557:2	0/1:0,60:30:60:1.00:2	0/1:34,23:31:57:0.404:2	0/1:55,34:31:89:0.382:2	./.	0/1:37,28:31:65:0.431:2	./.	0/1:55,25:30:81:0.313:2
chr6	66112409	rs974110	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:54,34:29:88:0.386:2	0/1:19,25:28:44:0.568:2	0/1:0,4:28:4:1.00:2	./.	0/1:50,32:29:82:0.390:2	0/1:56,46:28:102:0.451:2	0/1:56,32:28:88:0.364:2	0/1:2,122:29:124:0.984:2	0/1:64,54:30:118:0.458:2	0/1:56,55:29:111:0.495:2	0/1:75,58:29:133:0.436:2
chr6	66204945	rs12193967	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:34,32:32:66:0.485:2	0/1:20,13:32:33:0.394:2	0/1:7,7:31:14:0.500:2	./.	./.	./.	./.	./.	0/1:30,48:33:78:0.615:2	./.	0/1:37,52:32:89:0.584:2
chr6	69348566	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:35:199:0.020:2	./.	./.	./.
chr6	69666684	rs1932618	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:32:69:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,5:33:5:1.00:2	0/1:51,38:32:89:0.427:2	0/1:0,85:31:85:1.00:2	0/1:48,27:32:75:0.360:2	0/1:0,101:32:101:1.00:2	0/1:0,75:32:76:1.00:2	0/1:40,25:33:65:0.385:2	0/1:0,56:32:56:1.00:2	0/1:0,66:32:67:1.00:2
chr6	70064187	rs2296974	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,30:31:78:0.385:2	0/1:0,44:32:44:1.00:2	0/1:32,31:31:64:0.492:2	0/1:37,17:32:54:0.315:2	./.	./.	./.	./.
chr6	70070998	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:31:56:0.071:2	./.	./.	./.	./.	./.
chr6	70071173	rs913543	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,53:32:53:1.00:2	0/1:1,12:32:13:0.923:2	./.	./.	./.	./.	0/1:24,8:32:32:0.250:2	0/1:1,38:31:39:0.974:2	0/1:0,28:33:28:1.00:2	0/1:0,25:31:25:1.00:2	0/1:19,22:32:41:0.537:2
chr6	70407465	rs12648	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:6,4:33:10:0.400:2	./.	0/1:17,5:32:22:0.227:2	0/1:0,11:32:11:1.00:2	0/1:2,19:32:21:0.905:2	0/1:6,9:32:15:0.600:2	0/1:10,12:33:22:0.545:2	./.	./.	./.
chr6	70411336	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:29:100:0.040:2	./.	./.	./.
chr6	70506728	rs201428893	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,6:19:29:0.207:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	70608926	rs114230991	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,48:33:87:0.552:2	./.	./.	./.
chr6	70610141	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:196,4:34:200:0.020:2	./.	./.
chr6	70733547	rs2273426	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,29:32:58:0.500:2	0/1:21,18:32:39:0.462:2	./.	./.
chr6	70745764	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,4:32:28:0.143:2	./.	./.	./.	./.	./.	./.	./.
chr6	70778297	rs7349861	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:37,33:30:70:0.471:2	0/1:15,11:31:26:0.423:2	./.	./.	0/1:21,13:29:34:0.382:2	./.	0/1:37,10:30:47:0.213:2	0/1:47,21:30:68:0.309:2	./.	./.	0/1:63,44:30:107:0.411:2
chr6	70778378	rs2224513	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,30:33:65:0.462:2	0/1:13,18:33:31:0.581:2	./.	0/1:24,22:32:46:0.478:2	0/1:35,10:33:45:0.222:2	0/1:1,40:32:41:0.976:2	0/1:36,16:32:52:0.308:2	0/1:50,9:33:59:0.153:2	0/1:45,29:33:74:0.392:2	./.	0/1:2,83:32:85:0.976:2
chr6	70778379	rs199847271	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,30:32:65:0.462:2	0/1:13,18:33:31:0.581:2	./.	0/1:23,22:32:45:0.489:2	0/1:35,10:32:45:0.222:2	0/1:1,40:31:41:0.976:2	0/1:35,16:31:51:0.314:2	0/1:50,9:32:59:0.153:2	0/1:44,29:33:73:0.397:2	./.	0/1:2,82:31:85:0.976:2
chr6	70812123	rs7772672	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,91:32:91:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,10:33:10:1.00:2	0/1:33,44:33:77:0.571:2	0/1:0,35:32:35:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,73:33:73:1.00:2	0/1:0,62:33:62:1.00:2	0/1:0,110:33:110:1.00:2
chr6	70840919	rs59667029	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,14:33:48:0.292:2	./.	./.	./.
chr6	70854818	rs34837646	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	0/1:21,6:32:27:0.222:2	./.	./.	./.	./.	0/1:28,14:32:42:0.333:2
chr6	70856536	rs7762409	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:30:5:1.00:2	./.	0/1:27,16:31:43:0.372:2	0/1:0,58:31:58:1.00:2	0/1:36,17:31:53:0.321:2	0/1:45,30:31:75:0.400:2	0/1:50,32:32:82:0.390:2	0/1:53,27:30:80:0.338:2	0/1:61,46:32:108:0.430:2
chr6	70866609	rs2229799	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	0/1:27,17:31:44:0.386:2	0/1:2,61:31:63:0.968:2	0/1:29,23:31:53:0.442:2	0/1:43,19:31:62:0.306:2	0/1:48,46:32:94:0.489:2	0/1:50,25:31:75:0.333:2	0/1:65,37:31:102:0.363:2
chr6	70877980	rs1464159	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,6:30:32:0.188:2	./.	0/1:14,3:31:17:0.176:2	./.	0/1:19,4:31:23:0.174:2	0/1:30,11:30:41:0.268:2
chr6	70886385	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,7:33:42:0.167:2	./.	./.
chr6	70916888	rs1200576	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:33:3:1.00:2	0/1:0,10:31:10:1.00:2	0/1:13,8:31:21:0.381:2	0/1:0,14:32:14:1.00:2	./.	0/1:14,9:33:23:0.391:2	0/1:6,6:35:12:0.500:2	0/1:14,4:32:18:0.222:2	0/1:0,19:33:19:1.00:2
chr6	70944285	rs2072650	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,74:32:130:0.574:2	./.	./.	./.	./.
chr6	70949019	rs9446213	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,24:34:64:0.375:2	./.	./.
chr6	70951103	rs13202029	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,97:33:190:0.511:2
chr6	70961833	rs1135056	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:29:6:1.00:2	./.	./.	./.	0/1:19,10:30:29:0.345:2	0/1:11,20:29:31:0.645:2	./.	0/1:26,8:31:34:0.235:2	0/1:33,28:29:61:0.459:2
chr6	70962039	rs2274584	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	0/1:30,19:31:49:0.388:2	0/1:50,49:32:99:0.495:2	./.	0/1:16,29:32:45:0.644:2	./.
chr6	70963124	rs9346373	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,74:30:152:0.487:2	./.	./.	./.	./.	./.	./.
chr6	70963156	rs701690	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,28:29:28:1.00:2	./.	./.	0/1:95,97:29:192:0.505:2	0/1:101,95:30:197:0.485:2	0/1:96,99:29:196:0.508:2	./.	0/1:88,104:29:192:0.542:2	0/1:114,83:29:197:0.421:2
chr6	70965107	rs537940	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,20:30:44:0.455:2	./.	./.	./.	./.	./.
chr6	70976477	rs142431834	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,61:31:155:0.394:2	./.	./.	./.	./.	./.
chr6	70979324	rs6935778	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,54:32:117:0.462:2	./.	./.	./.	./.	./.	0/1:118,81:33:199:0.407:2
chr6	70981786	rs607156	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,15:30:24:0.625:2	./.	./.	./.	./.
chr6	70981827	rs77357454	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,11:32:34:0.324:2	./.	./.
chr6	70983805	rs16868897	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,35:30:62:0.565:2	./.	./.	./.	./.	./.
chr6	70984436	rs592121	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:33:6:0.500:2	0/1:27,24:32:51:0.471:2	./.	0/1:0,41:32:41:1.00:2	0/1:24,15:33:39:0.385:2	./.	0/1:0,50:33:50:1.00:2	./.	0/1:42,22:33:64:0.344:2
chr6	70989703	rs3806099	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,3:34:12:0.250:2	0/1:79,74:33:153:0.484:2	./.	0/1:0,168:32:168:1.00:2	0/1:71,73:33:144:0.507:2	./.	0/1:0,142:33:142:1.00:2	./.	0/1:56,95:33:151:0.629:2
chr6	70990765	rs6928611	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:33:13:0.462:2	./.	./.	0/1:46,12:31:58:0.207:2	./.	./.	./.	./.	./.
chr6	70991080	rs117215769	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,3:32:17:0.176:2	./.	./.
chr6	71004104	rs150571620	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,59:32:133:0.444:2	./.	./.	./.	./.	./.
chr6	71010040	rs139361722	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,74:31:198:0.374:2	./.	./.	./.	./.	./.
chr6	71010101	rs12210123	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,43:32:97:0.443:2	./.	./.	./.	./.	./.	./.	0/1:54,37:31:91:0.407:2
chr6	71012575	rs2242588	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:32:11:1.00:2	./.	./.	./.	./.	./.	0/1:38,61:33:99:0.616:2	0/1:36,50:32:86:0.581:2	0/1:49,44:32:93:0.473:2
chr6	71185171	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:34:89:0.045:2	./.	./.
chr6	71185351	rs77936274	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,4:31:14:0.286:2	./.	./.	./.	./.	./.
chr6	71187020	rs200185803	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:96,19:20:115:0.165:2	./.	./.	0/1:76,42:10:118:0.356:2	0/1:85,39:11:124:0.315:2	0/1:80,32:11:112:0.286:2	0/1:73,32:10:105:0.305:2	0/1:101,46:11:147:0.313:2	0/1:102,26:9:128:0.203:2	0/1:75,32:14:108:0.299:2	0/1:83,24:13:107:0.224:2
chr6	71233836	rs9455141	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,12:31:25:0.480:2	./.	./.	./.	./.	./.
chr6	71234960	rs9455142	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,15:32:39:0.385:2	./.	./.	./.	./.	./.
chr6	71235217	rs9455143	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,34:33:63:0.540:2	./.	./.	./.	./.	./.
chr6	71235647	rs16869301	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,19:31:56:0.339:2	./.	./.	./.	./.	./.
chr6	71236216	rs7740873	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,7:30:16:0.438:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	71238105	rs2747701	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:72,58:32:130:0.446:2	0/1:30,47:32:77:0.610:2	./.	0/1:1,141:32:142:0.993:2	0/1:84,57:31:141:0.404:2	./.	0/1:94,88:32:182:0.484:2	0/1:7,183:32:190:0.963:2	0/1:109,79:33:188:0.420:2	0/1:103,85:32:188:0.452:2	0/1:1,144:32:145:0.993:2
chr6	71245978	rs9446260	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,35:32:69:0.507:2	./.	./.	./.	./.	./.
chr6	71248046	rs9455152	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,61:30:110:0.555:2	./.	./.	./.	./.	./.
chr6	71289189	rs1048886	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,23:31:40:0.575:2	./.	./.	./.	./.	./.
chr6	71377781	rs112439957	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,39:31:87:0.448:2
chr6	71546702	rs2273566	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,10:32:22:0.455:2	./.	./.	./.	./.	./.	0/1:16,22:32:38:0.579:2
chr6	71547572	rs7748778	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,11:32:20:0.550:2	./.	./.	./.	./.	./.	./.
chr6	71566612	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:29:82:0.049:2	./.	./.	./.
chr6	71569090	rs576516	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,8:30:20:0.400:2	0/1:121,73:31:194:0.376:2	./.	./.	0/1:2,157:29:159:0.987:2	./.	0/1:0,187:31:188:1.00:2	./.	0/1:87,63:30:150:0.420:2
chr6	71665986	rs1574490	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:29:6:0.667:2	./.	./.	./.	0/1:6,5:31:11:0.455:2	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.
chr6	72006187	rs2273889	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:30:9:0.333:2	./.	./.	./.	./.	./.
chr6	72006512	rs2273888	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,24:33:24:1.00:2	0/1:17,22:33:39:0.564:2	./.	./.
chr6	72809641	rs41265489	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:47,20:32:67:0.299:2	0/1:22,11:32:33:0.333:2	./.	./.	./.	./.	0/1:24,11:32:35:0.314:2	0/1:29,16:31:45:0.356:2	./.	./.	./.
chr6	72889472	rs2249021	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,19:33:41:0.463:2	0/1:15,13:33:28:0.464:2	0/1:3,4:32:7:0.571:2	0/1:27,22:33:49:0.449:2	0/1:28,25:32:53:0.472:2	0/1:0,47:33:47:1.00:2	0/1:17,32:33:49:0.653:2	0/1:45,24:32:69:0.348:2	0/1:0,44:33:44:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,47:33:47:1.00:2
chr6	72892257	rs2463730	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:31:41:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,48:31:48:1.00:2	0/1:1,48:31:49:0.980:2	0/1:0,64:32:64:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,34:31:34:1.00:2
chr6	72960774	rs186078277	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,14:32:39:0.359:2	./.	./.	./.	./.	./.	./.
chr6	72984123	rs41265501	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:33:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	73102442	rs2815738	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,37:31:73:0.507:2	0/1:15,16:31:31:0.516:2	./.	0/1:33,40:30:73:0.548:2	0/1:35,37:30:72:0.514:2	0/1:0,79:30:79:1.00:2	0/1:43,45:30:88:0.511:2	0/1:33,51:30:84:0.607:2	0/1:48,41:31:89:0.461:2	0/1:25,27:31:52:0.519:2	./.
chr6	73332121	rs34821312	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.
chr6	73900338	rs12662818	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:29:9:0.667:2	./.	./.	./.	0/1:19,20:28:39:0.513:2	./.	./.	./.	./.
chr6	73904189	rs35791353	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:32:9:0.444:2	./.	./.	./.	0/1:29,23:33:52:0.442:2	./.	./.	./.	./.
chr6	73904557	rs61743058	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,24:30:56:0.429:2	./.
chr6	74019338	rs16883571	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,25:30:53:0.472:2	./.	./.	./.	./.
chr6	74019376	rs16883573	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,18:31:42:0.429:2	./.	./.	./.	./.
chr6	74072937	rs564533	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,74:33:150:0.493:2	./.	./.
chr6	74073531	rs561930	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:27:2:1.00:2	0/1:3,3:33:6:0.500:2	0/1:0,4:33:4:1.00:2	./.	./.	./.	0/1:2,5:34:7:0.714:2	0/1:0,11:33:11:1.00:2	0/1:0,7:32:7:1.00:2
chr6	74079024	rs496530	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,44:33:83:0.537:2	0/1:35,18:32:53:0.340:2	0/1:0,24:34:24:1.00:2	0/1:53,53:32:106:0.500:2	0/1:1,136:32:137:0.993:2	./.	./.	0/1:63,73:32:136:0.537:2	0/1:60,54:32:114:0.474:2	0/1:0,104:32:104:1.00:2	0/1:0,97:31:98:1.00:2
chr6	74079041	rs497243	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:32:69:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,110:31:110:1.00:2	0/1:0,95:32:95:1.00:2	0/1:1,102:32:103:0.990:2	0/1:0,114:32:114:1.00:2	0/1:0,110:33:110:1.00:2	0/1:0,81:31:81:1.00:2	0/1:1,86:31:87:0.989:2
chr6	74111697	rs193003462	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,29:33:57:0.509:2	./.	./.	./.	./.
chr6	74121973	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,5:28:120:0.042:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	74125875	rs311686	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,19:32:43:0.442:2	0/1:16,9:32:25:0.360:2	0/1:0,3:32:3:1.00:2	0/1:26,16:32:42:0.381:2	0/1:15,15:32:30:0.500:2	./.	./.	0/1:21,12:32:33:0.364:2	0/1:28,34:33:62:0.548:2	0/1:0,38:31:38:1.00:2	0/1:0,64:32:64:1.00:2
chr6	74125888	rs311685	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,17:28:41:0.415:2	0/1:14,8:29:23:0.364:2	0/1:0,2:29:2:1.00:2	0/1:24,15:28:39:0.385:2	0/1:14,15:30:29:0.517:2	./.	./.	0/1:20,7:30:27:0.259:2	0/1:25,33:31:58:0.569:2	0/1:0,33:30:33:1.00:2	0/1:0,67:30:67:1.00:2
chr6	74135016	rs311678	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,8:32:8:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,2:33:2:1.00:2	0/1:8,4:34:12:0.333:2	0/1:8,7:32:15:0.467:2	0/1:0,12:32:12:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,15:33:15:1.00:2	0/1:12,10:33:22:0.455:2	0/1:0,6:33:6:1.00:2	0/1:0,17:33:17:1.00:2
chr6	74138503	rs73754628	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,26:31:45:0.578:2	./.	./.	./.	./.
chr6	74155346	rs610913	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:32:26:1.00:2	0/1:1,18:32:19:0.947:2	0/1:0,11:32:11:1.00:2	0/1:6,13:32:19:0.684:2	0/1:5,9:32:14:0.643:2	0/1:0,39:32:39:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,52:32:52:1.00:2
chr6	74161503	rs9446904	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	0/1:0,3:34:3:1.00:2	./.	0/1:0,2:35:2:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,2:31:2:1.00:2	./.	0/1:0,2:30:2:1.00:2
chr6	74161762	rs35629782	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,22:31:36:0.611:2	0/1:11,5:32:16:0.313:2	./.	./.	./.	0/1:42,30:31:72:0.417:2	./.	0/1:14,13:30:27:0.481:2	0/1:11,16:33:27:0.593:2	./.	./.
chr6	74161801	rs9352000	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:29:33:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,20:31:20:1.00:2
chr6	74190448	rs2036039	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,79:33:154:0.513:2	0/1:71,59:32:130:0.454:2	./.	./.	./.	./.	./.	./.
chr6	74227873	rs2882585	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,4:32:23:0.174:2	./.	./.	./.	./.	./.	./.
chr6	74227940	rs11556677	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,5:30:97:0.052:2	./.	0/1:91,5:31:96:0.052:2	./.	0/1:101,11:28:112:0.098:2	0/1:120,7:31:127:0.055:2	./.	0/1:119,4:32:123:0.033:2
chr6	74227952	rs200704078	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:86,5:33:91:0.055:2	0/1:41,5:23:46:0.109:2	./.	./.	./.	./.	./.	0/1:116,5:32:122:0.041:2	./.	./.	./.
chr6	74228089	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:32:165:0.024:2
chr6	74228092	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:30:132:0.030:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	74228113	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,6:30:180:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:32:178:0.022:2
chr6	74228131	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,6:26:188:0.032:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	74228141	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,5:33:189:0.026:2
chr6	74228324	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,3:32:33:0.091:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	74228474	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:33:116:0.034:2
chr6	74228766	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,3:31:19:0.158:2	./.	./.	0/1:16,3:30:19:0.158:2	./.	./.	./.	./.	./.	./.
chr6	74229642	rs138320387	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,32:32:55:0.582:2	./.	./.	./.	./.	./.
chr6	74304897	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:33:103:0.039:2	./.
chr6	74348142	rs3757112	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,14:30:33:0.424:2	./.	./.	./.	./.
chr6	74354175	rs472294	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,36:32:66:0.545:2	0/1:11,20:32:31:0.645:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	74405949	rs200017709	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,7:30:13:0.538:2	./.	./.	./.	./.	./.
chr6	74466377	rs6453696	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:67,50:33:117:0.427:2	0/1:59,36:32:95:0.379:2	0/1:0,9:31:9:1.00:2	0/1:74,57:31:131:0.435:2	0/1:35,25:31:60:0.417:2	0/1:67,57:31:124:0.460:2	./.	0/1:83,51:32:134:0.381:2	0/1:85,66:32:151:0.437:2	0/1:78,46:31:124:0.371:2	0/1:105,76:32:181:0.420:2
chr6	74475675	rs7741152	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,30:32:65:0.462:2	0/1:13,14:32:27:0.519:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	74493432	rs10455097	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:33:7:1.00:2	0/1:20,21:32:41:0.512:2	0/1:29,11:32:40:0.275:2	0/1:26,14:33:40:0.350:2	./.	0/1:11,21:32:32:0.656:2	0/1:27,22:34:49:0.449:2	0/1:28,20:33:48:0.417:2	0/1:30,29:33:59:0.492:2
chr6	74493537	rs138465270	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,20:32:47:0.426:2
chr6	74497009	rs2351528	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:34:2:1.00:2	0/1:19,7:31:26:0.269:2	0/1:11,4:31:15:0.267:2	0/1:16,14:32:30:0.467:2	./.	0/1:19,6:33:25:0.240:2	./.	./.	./.
chr6	74497152	rs5023688	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:31:3:1.00:2	0/1:17,17:31:34:0.500:2	0/1:26,15:30:41:0.366:2	0/1:27,16:30:43:0.372:2	./.	0/1:44,22:30:66:0.333:2	./.	./.	./.
chr6	74516631	rs35630075	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,22:29:56:0.393:2	./.	./.	./.	./.	./.	./.
chr6	74521947	rs2917862	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:70,76:32:146:0.521:2	0/1:53,38:32:91:0.418:2	./.	0/1:87,96:32:183:0.525:2	0/1:60,79:31:139:0.568:2	0/1:84,60:31:145:0.417:2	0/1:47,60:32:107:0.561:2	0/1:56,75:31:131:0.573:2	0/1:89,70:33:159:0.440:2	./.	0/1:83,83:32:166:0.500:2
chr6	74521999	rs74442225	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,29:30:70:0.414:2	./.	./.	./.	./.	./.
chr6	74533192	rs2917887	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,28:30:57:0.491:2	0/1:6,15:29:21:0.714:2	0/1:0,10:30:10:1.00:2	0/1:0,60:29:60:1.00:2	0/1:0,78:29:78:1.00:2	0/1:0,79:30:79:1.00:2	0/1:18,41:30:59:0.695:2	0/1:0,80:29:80:1.00:2	0/1:0,77:30:77:1.00:2	0/1:21,34:30:55:0.618:2	0/1:0,72:29:72:1.00:2
chr6	75797302	rs970547	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:0,31:33:31:1.00:2	0/1:10,3:33:13:0.231:2	0/1:0,64:32:64:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,54:32:54:1.00:2	0/1:55,16:33:71:0.225:2	0/1:2,82:32:84:0.976:2	0/1:53,52:33:105:0.495:2	0/1:0,70:32:70:1.00:2	0/1:0,88:33:88:1.00:2
chr6	75799862	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,4:29:25:0.160:2	./.	./.	./.
chr6	75801260	rs79461746	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,15:31:32:0.469:2	./.	./.	./.	./.	./.
chr6	75828814	rs35551395	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,49:32:97:0.505:2	./.	./.	./.	./.	./.
chr6	75834971	rs35523808	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,64:31:138:0.464:2	0/1:65,59:31:124:0.476:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	75841722	rs594012	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,80:32:82:0.988:2	0/1:0,41:32:41:1.00:2	0/1:7,5:32:12:0.417:2	0/1:1,94:31:95:0.989:2	0/1:0,110:31:110:1.00:2	0/1:42,43:31:85:0.506:2	0/1:0,92:31:92:1.00:2	0/1:1,109:31:110:0.991:2	0/1:0,96:32:96:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,100:32:100:1.00:2
chr6	75843621	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:31:154:0.026:2
chr6	75848181	rs240736	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:3,64:32:67:0.955:2	0/1:0,46:32:46:1.00:2	0/1:4,11:32:15:0.733:2	./.	0/1:48,43:31:91:0.473:2	./.	0/1:49,51:33:100:0.510:2	0/1:54,54:32:108:0.500:2	./.	0/1:40,26:32:66:0.394:2	./.
chr6	75861639	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,10:33:153:0.065:2	./.	./.	./.	./.	./.
chr6	75893757	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:146,4:32:150:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr6	75994151	rs240374	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,33:32:61:0.541:2	./.	./.	0/1:26,43:33:69:0.623:2	./.	./.
chr6	76022171	rs35227190	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,87:31:178:0.489:2	./.	./.	./.	./.	./.
chr6	76023414	rs35449948	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,35:32:72:0.486:2	./.	./.	./.	./.	./.
chr6	76024704	rs62415695	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,14:31:28:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	76024711	rs34148186	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,101:33:197:0.513:2	./.	./.	./.	./.	./.
chr6	76343304	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,3:33:40:0.075:2	./.	./.	./.	./.	./.
chr6	76344431	rs17414086	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,29:32:75:0.387:2	0/1:27,24:31:51:0.471:2	./.	./.	./.	./.	0/1:25,21:31:46:0.457:2	0/1:39,31:32:70:0.443:2
chr6	76369054	rs507662	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,92:32:92:1.00:2	0/1:0,43:31:43:1.00:2	./.	0/1:0,110:32:110:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,119:33:119:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,122:30:122:1.00:2
chr6	76376552	rs17414687	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,37:31:72:0.514:2	0/1:28,22:31:50:0.440:2	./.	./.	./.	./.	0/1:39,31:32:70:0.443:2	0/1:16,49:32:65:0.754:2
chr6	76425288	rs9250	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:52,4:31:56:0.071:2	./.	./.	0/1:25,22:31:47:0.468:2	0/1:27,29:32:56:0.518:2	./.	./.	./.	./.	0/1:18,20:33:38:0.526:2	0/1:36,36:32:72:0.500:2
chr6	76545684	rs12210963	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,14:32:14:1.00:2	./.	0/1:22,27:32:49:0.551:2	0/1:65,47:32:112:0.420:2	./.	0/1:42,56:32:99:0.571:2	0/1:82,59:33:141:0.418:2	./.	./.
chr6	76576290	rs11756446	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,40:31:121:0.331:2	0/1:94,84:32:178:0.472:2	./.	./.
chr6	76604573	rs3798429	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	0/1:0,39:30:39:1.00:2	0/1:57,41:30:98:0.418:2	./.	0/1:61,39:30:100:0.390:2	0/1:78,45:32:123:0.366:2	0/1:50,43:30:93:0.462:2	0/1:57,82:31:139:0.590:2
chr6	76633385	rs3778005	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,91:32:93:0.978:2	./.	0/1:47,28:31:76:0.373:2	0/1:28,16:31:44:0.364:2	./.	./.	./.	0/1:68,50:33:118:0.424:2
chr6	76640781	rs3734313	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,77:31:161:0.478:2	./.	./.	./.	./.	./.	./.
chr6	76640803	rs10943299	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:29:8:1.00:2	./.	0/1:78,61:31:139:0.439:2	./.	./.	0/1:94,68:31:162:0.420:2	0/1:86,62:31:148:0.419:2	0/1:66,48:30:114:0.421:2	./.
chr6	76660551	rs3734311	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:33,21:33:54:0.389:2	0/1:8,18:33:26:0.692:2	./.	0/1:34,14:31:48:0.292:2	./.	0/1:0,57:31:57:1.00:2	./.	./.	./.	./.	0/1:31,25:32:56:0.446:2
chr6	76717157	rs3736925	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,23:32:38:0.605:2	0/1:12,4:30:16:0.250:2	./.	./.	./.	./.	./.	0/1:18,27:32:45:0.600:2
chr6	76731854	rs41269331	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,38:32:118:0.322:2	./.	./.	./.	./.	./.	./.	./.
chr6	78172260	rs6296	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,24:33:53:0.453:2	0/1:24,29:33:53:0.547:2	./.	./.	./.
chr6	78172992	rs6298	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,60:31:161:0.373:2	0/1:102,60:32:162:0.370:2	./.	./.	./.
chr6	79595097	rs6908105	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,80:29:80:1.00:2	0/1:2,62:29:64:0.969:2	0/1:2,7:28:9:0.778:2	./.	0/1:42,31:28:73:0.425:2	./.	0/1:38,41:29:79:0.519:2	0/1:3,94:28:97:0.969:2	./.	0/1:55,44:29:99:0.444:2	0/1:1,110:28:112:0.991:2
chr6	79655055	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:195,4:34:199:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr6	79656562	rs2275291	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,50:30:50:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,5:30:5:1.00:2	./.	0/1:26,20:31:46:0.435:2	./.	0/1:13,18:31:31:0.581:2	0/1:0,46:32:46:1.00:2	./.	0/1:13,10:32:23:0.435:2	0/1:0,53:31:53:1.00:2
chr6	79656570	rs2275290	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,48:31:48:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,5:31:5:1.00:2	./.	0/1:25,18:32:43:0.419:2	./.	0/1:13,17:31:30:0.567:2	0/1:0,38:32:38:1.00:2	./.	0/1:13,10:31:23:0.435:2	0/1:0,51:32:51:1.00:2
chr6	79657391	rs1984195	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,27:30:68:0.397:2	0/1:23,12:30:35:0.343:2	0/1:0,60:30:60:1.00:2	0/1:39,17:30:56:0.304:2	./.	0/1:42,27:32:69:0.391:2	0/1:38,23:31:61:0.377:2	./.
chr6	79675701	rs9350797	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,72:33:73:0.986:2	0/1:0,40:33:40:1.00:2	0/1:0,12:33:12:1.00:2	./.	0/1:45,24:33:69:0.348:2	./.	0/1:35,38:33:73:0.521:2	0/1:4,87:33:91:0.956:2	./.	0/1:46,40:33:86:0.465:2	0/1:0,101:33:101:1.00:2
chr6	79679577	rs7742431	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,37:29:70:0.529:2	0/1:23,14:30:37:0.378:2	0/1:1,49:29:50:0.980:2	0/1:26,18:30:44:0.409:2	./.	0/1:42,21:30:63:0.333:2	0/1:30,24:30:54:0.444:2	./.
chr6	79688366	rs12209235	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:2,90:29:92:0.978:2	0/1:0,52:30:52:1.00:2	./.	./.	0/1:57,42:30:99:0.424:2	./.	./.	./.	./.	0/1:32,50:30:82:0.610:2	./.
chr6	79692751	rs11547228	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,26:32:60:0.433:2	./.	./.	./.	./.	0/1:49,25:31:74:0.338:2	./.	./.
chr6	79708000	rs7747479	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:32:94:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,125:32:125:1.00:2	0/1:0,102:31:102:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,125:32:125:1.00:2	0/1:0,141:32:141:1.00:2	0/1:0,98:33:98:1.00:2	0/1:0,73:32:73:1.00:2	0/1:2,115:32:117:0.983:2
chr6	79918309	rs9341761	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:31:71:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,69:30:69:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,61:30:61:1.00:2	0/1:0,40:31:40:1.00:2	0/1:41,37:30:78:0.474:2	0/1:0,61:32:61:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,70:31:70:1.00:2
chr6	80196848	rs1875845	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:87,61:31:148:0.412:2	0/1:44,32:32:76:0.421:2	./.	./.	0/1:66,34:30:100:0.340:2	0/1:77,61:30:139:0.442:2	0/1:49,45:31:94:0.479:2	./.	0/1:110,74:31:184:0.402:2	./.	./.
chr6	80228535	rs34068461	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:100,93:33:193:0.482:2	0/1:68,63:33:131:0.481:2	./.	./.	./.	./.	0/1:102,91:33:193:0.472:2	./.	0/1:90,104:33:194:0.536:2	./.	./.
chr6	80228541	rs2655655	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:105,90:32:195:0.462:2	0/1:70,70:33:140:0.500:2	0/1:0,20:33:20:1.00:2	0/1:1,191:33:192:0.995:2	0/1:0,186:33:187:1.00:2	0/1:101,91:32:192:0.474:2	0/1:0,189:33:189:1.00:2	0/1:0,186:33:186:1.00:2	0/1:0,187:33:187:1.00:2	./.	0/1:107,73:33:180:0.406:2
chr6	80383402	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,4:32:40:0.100:2	./.	./.	./.	./.	./.	./.
chr6	80626375	rs3812153	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:69,89:30:158:0.563:2	0/1:48,57:30:105:0.543:2	./.	./.	./.	./.	0/1:52,39:30:91:0.429:2	./.	./.	0/1:85,72:30:157:0.459:2	./.
chr6	80717676	rs2230513	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,17:32:35:0.486:2	./.
chr6	80741243	rs1801465	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,55:32:100:0.550:2	./.	./.	0/1:68,36:32:104:0.346:2
chr6	80749972	rs1801460	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,18:33:41:0.439:2	./.	./.	0/1:62,39:34:102:0.386:2
chr6	80837253	rs9448894	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:21,5:31:26:0.192:2	0/1:6,7:31:13:0.538:2	0/1:0,5:31:5:1.00:2	./.	0/1:6,9:29:16:0.600:2	0/1:0,20:30:20:1.00:2	0/1:0,15:28:15:1.00:2	0/1:20,7:31:27:0.259:2	0/1:11,6:30:17:0.353:2	0/1:9,10:31:19:0.526:2	./.
chr6	82461520	rs3186631	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,5:30:17:0.294:2	0/1:4,3:32:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	82900811	rs9449444	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:28,17:30:45:0.378:2	0/1:27,5:31:32:0.156:2	0/1:6,9:31:15:0.600:2	./.	0/1:20,14:29:34:0.412:2	0/1:34,34:30:68:0.500:2	./.	0/1:1,48:30:49:0.980:2	./.	0/1:25,37:31:62:0.597:2	0/1:57,32:31:90:0.360:2
chr6	82933309	rs9361904	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:36,7:33:43:0.163:2	0/1:21,17:32:38:0.447:2	./.	./.	0/1:12,16:30:28:0.571:2	0/1:40,27:31:67:0.403:2	./.	0/1:0,51:32:52:1.00:2	./.	0/1:27,18:31:45:0.400:2	0/1:27,21:32:48:0.438:2
chr6	82936974	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:33:57:0.070:2	./.	./.	./.	./.
chr6	83075914	rs700494	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:32:64:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,3:32:3:1.00:2	0/1:24,24:32:48:0.500:2	0/1:0,53:31:53:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,34:31:34:1.00:2	0/1:20,20:32:40:0.500:2	0/1:1,35:32:36:0.972:2	0/1:0,26:33:26:1.00:2	0/1:1,60:32:61:0.984:2
chr6	83076532	rs190345045	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,31:32:70:0.443:2	./.
chr6	83076791	rs700495	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,78:29:79:0.987:2	0/1:0,47:28:47:1.00:2	0/1:0,5:28:5:1.00:2	0/1:29,26:28:55:0.473:2	0/1:31,17:28:48:0.354:2	0/1:35,41:28:76:0.539:2	0/1:2,38:29:40:0.950:2	0/1:33,58:29:91:0.637:2	0/1:0,96:30:96:1.00:2	0/1:0,58:29:58:1.00:2	0/1:0,92:29:92:1.00:2
chr6	83077144	rs150371903	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,4:23:9:0.444:2	./.
chr6	83077276	rs41271557	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,40:32:124:0.323:2	./.
chr6	83078398	rs770910	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,37:30:64:0.578:2	./.
chr6	83078575	rs770909	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,16:33:16:1.00:2	0/1:0,7:32:7:1.00:2	./.	0/1:14,6:33:20:0.300:2	0/1:7,3:33:10:0.300:2	0/1:8,5:32:13:0.385:2	0/1:0,11:33:11:1.00:2	0/1:7,5:31:12:0.417:2	0/1:0,12:31:12:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,12:33:12:1.00:2
chr6	83079616	rs139934487	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,45:31:93:0.484:2	./.
chr6	83079972	rs144661266	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,4:32:9:0.444:2	./.
chr6	83667045	rs7739323	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,24:30:58:0.414:2	0/1:36,24:30:60:0.400:2	0/1:43,31:30:74:0.419:2	./.	./.	./.
chr6	83759432	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:33:46:0.089:2	./.	./.	./.	./.
chr6	83775435	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:33:47:0.085:2	./.
chr6	83830467	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,4:33:104:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr6	83838673	rs4706980	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,40:32:69:0.580:2	0/1:44,35:32:79:0.443:2	./.	./.	./.
chr6	83847014	rs181310072	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,45:28:114:0.395:2	./.	./.	./.	./.	./.	./.
chr6	83874448	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,6:32:172:0.035:2	./.	./.	./.	./.
chr6	83880167	rs473267	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,68:32:152:0.447:2	./.	./.	0/1:73,60:32:133:0.451:2	0/1:1,177:32:178:0.994:2	0/1:98,81:33:179:0.453:2	0/1:62,54:32:116:0.466:2	0/1:80,73:32:153:0.477:2
chr6	83881740	rs542948	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,34:33:59:0.576:2	./.	./.	0/1:18,30:34:48:0.625:2	0/1:0,43:32:43:1.00:2	0/1:22,29:34:51:0.569:2	0/1:16,22:33:38:0.579:2	0/1:23,30:33:53:0.566:2
chr6	83888417	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,4:32:80:0.050:2	./.	./.	./.	./.	./.	./.	./.
chr6	83892684	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,11:14:104:0.106:2
chr6	83892687	rs62419258	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,10:17:59:0.169:2	./.	./.	0/1:79,11:14:91:0.122:2	0/1:69,16:14:86:0.188:2	0/1:67,17:14:84:0.202:2	0/1:56,11:14:67:0.164:2	0/1:103,17:16:120:0.142:2	0/1:79,12:18:91:0.132:2	0/1:54,20:16:74:0.270:2	0/1:85,24:14:109:0.220:2
chr6	83905672	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:33:99:0.040:2	./.
chr6	83921741	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:34:191:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	83949261	rs1180230	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:26,21:33:47:0.447:2	0/1:25,19:31:44:0.432:2	./.	./.	0/1:18,21:32:39:0.538:2	0/1:32,32:32:64:0.500:2	./.	0/1:29,47:32:76:0.618:2	0/1:67,46:33:113:0.407:2	./.	./.
chr6	83963452	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,3:33:50:0.060:2	./.	./.
chr6	84108200	rs151111787	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,39:32:85:0.464:2
chr6	84233831	rs504593	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:33:50:1.00:2	0/1:1,26:32:27:0.963:2	0/1:0,3:33:3:1.00:2	0/1:24,22:31:46:0.478:2	0/1:0,52:32:52:1.00:2	0/1:16,25:32:41:0.610:2	0/1:0,33:32:33:1.00:2	0/1:0,53:32:53:1.00:2	0/1:1,40:33:41:0.976:2	0/1:0,42:32:42:1.00:2	0/1:33,23:33:56:0.411:2
chr6	84234144	rs3812141	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:30:9:1.00:2	./.	./.	./.	0/1:28,37:33:65:0.569:2	./.	./.	0/1:38,16:33:54:0.296:2	./.
chr6	84269891	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:32:104:0.038:2	./.	./.	./.
chr6	84290279	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,4:32:112:0.036:2	./.	./.	./.	./.	./.	./.
chr6	84300997	rs2273363	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:29:8:0.750:2	./.	0/1:42,25:29:67:0.373:2	./.	0/1:36,35:29:71:0.493:2	./.	./.	0/1:2,24:28:26:0.923:2	./.
chr6	84303342	rs1033655	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:29:8:1.00:2	0/1:33,26:29:59:0.441:2	0/1:0,68:29:68:1.00:2	0/1:32,38:29:70:0.543:2	0/1:40,30:29:70:0.429:2	0/1:38,26:29:64:0.406:2	0/1:26,30:30:56:0.536:2	0/1:0,39:29:39:1.00:2	0/1:21,31:29:52:0.596:2
chr6	84417629	rs61739350	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:29:12:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	84563147	rs9353143	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,6:33:20:0.300:2	./.	./.	./.	./.	./.
chr6	84563887	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:28:57:0.070:2	./.
chr6	84665138	rs141026706	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,32:31:59:0.542:2	./.	./.	./.	./.	./.
chr6	84798956	rs115655382	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,30:31:65:0.462:2	./.
chr6	84799059	rs9449776	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,48:30:107:0.449:2	./.	./.	./.	./.	./.	0/1:41,36:31:77:0.468:2	./.
chr6	84799185	rs2875382	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,16:30:55:0.291:2	0/1:19,7:30:26:0.269:2	0/1:24,31:29:55:0.564:2	./.	./.	0/1:29,31:31:60:0.517:2	0/1:29,18:30:47:0.383:2	./.
chr6	84862589	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:32:139:0.029:2	./.
chr6	84881429	rs41271603	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,17:34:55:0.309:2	./.	./.	./.	./.	./.	./.
chr6	84884494	rs143976780	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,27:33:79:0.342:2	./.	./.	./.	./.	./.	./.	./.
chr6	84904604	rs17790493	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,22:31:56:0.393:2	./.	./.	./.	./.	./.	./.
chr6	84925066	rs147915749	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,10:33:38:0.263:2	./.	./.	./.	./.	./.	./.
chr6	85473758	rs172562	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,4:29:7:0.571:2	0/1:1,7:32:8:0.875:2	./.	0/1:0,18:32:18:1.00:2	0/1:7,11:30:18:0.611:2	0/1:7,14:27:21:0.667:2	0/1:6,4:29:10:0.400:2	0/1:1,26:30:27:0.963:2	./.	0/1:3,6:31:9:0.667:2	0/1:9,3:34:12:0.250:2
chr6	86199233	rs2229523	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:30:77:1.00:2	0/1:0,35:29:35:1.00:2	0/1:6,6:27:12:0.500:2	0/1:0,95:29:95:1.00:2	0/1:43,34:29:77:0.442:2	0/1:57,41:30:98:0.418:2	0/1:2,108:29:110:0.982:2	0/1:2,105:29:107:0.981:2	0/1:58,51:30:109:0.468:2	0/1:0,67:30:67:1.00:2	0/1:43,29:29:72:0.403:2
chr6	86199265	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,4:31:86:0.047:2	./.	./.	./.	./.	./.	./.
chr6	86246635	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:32:38:0.079:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	86253349	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,5:28:190:0.026:2	./.	./.	./.
chr6	86257229	rs41271629	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,9:29:22:0.409:2	./.	./.	./.	./.	./.	0/1:24,12:27:36:0.333:2
chr6	86346734	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:33:198:0.025:2	./.	./.	./.
chr6	86350008	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,6:30:90:0.067:2	./.	0/1:130,4:33:134:0.030:2	./.	./.
chr6	86350013	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:31:85:0.047:2	./.	./.	./.	./.
chr6	86350014	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:30:85:0.047:2	./.	./.	./.	./.
chr6	86350171	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,6:30:104:0.058:2	./.	./.	./.
chr6	86350265	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:33:126:0.032:2	./.	./.
chr6	86445472	rs13208740	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,37:33:37:1.00:2	./.
chr6	87725340	rs112628865	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,5:31:21:0.238:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	87725442	rs41273269	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,53:32:128:0.414:2	./.
chr6	87725583	rs6302	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,19:31:32:0.594:2	./.	./.	./.	./.	./.	0/1:47,80:32:127:0.630:2	./.	0/1:0,161:31:161:1.00:2
chr6	87797904	rs6155	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,29:32:43:0.674:2	./.	./.	./.	./.	./.	./.
chr6	87925706	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,8:33:19:0.421:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	87965528	rs6908834	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:33:29:1.00:2	0/1:0,19:33:19:1.00:2	0/1:5,3:33:8:0.375:2	0/1:14,8:32:22:0.364:2	0/1:16,10:33:26:0.385:2	0/1:25,16:31:41:0.390:2	0/1:17,9:33:26:0.346:2	0/1:0,31:33:31:1.00:2	0/1:18,15:32:33:0.455:2	0/1:21,10:31:31:0.323:2	./.
chr6	87966524	rs143504993	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,9:33:20:0.450:2	./.	./.	./.	./.	./.	./.	./.
chr6	87968565	rs9362415	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,20:32:20:1.00:2	0/1:0,17:32:17:1.00:2	./.	0/1:10,11:30:21:0.524:2	0/1:8,7:31:15:0.467:2	0/1:14,9:32:23:0.391:2	0/1:16,15:32:31:0.484:2	0/1:0,19:32:19:1.00:2	0/1:8,8:33:16:0.500:2	0/1:13,14:32:27:0.519:2	./.
chr6	87969341	rs16878809	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,21:32:30:0.700:2	./.	./.	./.	./.	./.	./.
chr6	87969480	rs6910541	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:30:2:1.00:2	0/1:25,14:31:39:0.359:2	./.	./.	0/1:22,5:31:27:0.185:2	./.	./.	0/1:27,8:31:35:0.229:2	./.
chr6	87969737	rs3734187	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:32:63:1.00:2	0/1:0,36:32:36:1.00:2	0/1:3,7:32:10:0.700:2	0/1:62,44:32:106:0.415:2	0/1:49,43:31:92:0.467:2	0/1:44,35:31:79:0.443:2	0/1:81,44:31:125:0.352:2	0/1:4,91:32:95:0.958:2	0/1:57,54:32:111:0.486:2	0/1:55,31:32:86:0.360:2	./.
chr6	87970062	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:33:104:0.038:2	./.	./.	./.	./.	./.
chr6	87970301	rs3812132	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:30:17:1.00:2	0/1:0,9:30:9:1.00:2	./.	0/1:9,8:30:17:0.471:2	0/1:0,19:31:19:1.00:2	0/1:6,17:31:23:0.739:2	0/1:6,7:32:13:0.538:2	0/1:1,18:30:19:0.947:2	0/1:7,13:30:20:0.650:2	0/1:7,6:28:13:0.462:2	./.
chr6	87994015	rs6934603	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,83:33:83:1.00:2	0/1:0,49:32:49:1.00:2	0/1:1,6:33:7:0.857:2	0/1:31,46:33:77:0.597:2	0/1:17,21:32:38:0.553:2	0/1:51,30:33:81:0.370:2	0/1:18,31:33:49:0.633:2	0/1:0,79:33:79:1.00:2	0/1:48,28:34:76:0.368:2	0/1:31,23:33:54:0.426:2	./.
chr6	87994101	rs41273281	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,33:31:75:0.440:2	./.	./.	./.	./.	./.	./.
chr6	87994504	rs35259282	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,70:31:144:0.486:2	./.	./.	0/1:105,57:32:162:0.352:2	./.	./.	./.	./.
chr6	87994550	rs41273283	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,22:31:51:0.431:2	./.	./.	./.	./.	./.	./.
chr6	87994572	rs4707358	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:31:47:1.00:2	0/1:0,29:31:29:1.00:2	0/1:8,4:30:12:0.333:2	0/1:32,25:31:57:0.439:2	0/1:0,33:30:33:1.00:2	0/1:36,26:31:62:0.419:2	0/1:38,26:32:64:0.406:2	0/1:0,28:30:28:1.00:2	0/1:40,21:32:61:0.344:2	0/1:19,15:31:34:0.441:2	./.
chr6	88108051	rs67076390	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,11:35:11:1.00:2	./.	./.	./.	./.	./.	./.	0/1:0,5:35:5:1.00:2	./.	./.	0/1:1,5:32:8:0.833:2
chr6	88123549	rs35438647	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,11:32:17:0.647:2	./.	./.	./.	./.	./.	./.
chr6	88125581	rs13219364	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,11:31:31:0.355:2	./.	./.	./.	./.	./.	./.
chr6	88128089	rs12528249	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,28:31:57:0.491:2	./.	./.	./.	./.	./.	./.
chr6	88136324	rs34673243	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,7:32:15:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	88182704	rs9450704	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	0/1:0,2:31:2:1.00:2	./.	0/1:0,3:30:3:1.00:2	./.	./.	./.
chr6	88224164	rs8802	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,51:33:118:0.432:2	./.
chr6	88228353	rs139564081	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,25:29:58:0.431:2	./.	./.	./.
chr6	88228524	rs3734908	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:42,38:32:80:0.475:2	0/1:26,35:31:61:0.574:2	./.	0/1:75,52:31:127:0.409:2	./.	./.	./.	./.	./.	./.	./.
chr6	88229338	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,31:29:137:0.226:2
chr6	88229339	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,7:31:138:0.051:2
chr6	88229344	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,40:29:139:0.288:2
chr6	88240570	rs35862137	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,53:31:89:0.596:2	0/1:25,31:31:56:0.554:2	./.	./.	./.	0/1:58,37:29:95:0.389:2	./.	./.	./.	./.	./.
chr6	88318883	rs2307389	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:43,20:32:63:0.317:2	0/1:17,9:32:28:0.346:2	./.	0/1:45,43:32:88:0.489:2	./.	./.	./.	./.	./.	./.	./.
chr6	88326079	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:33:173:0.023:2
chr6	88362943	rs2307393	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:34,33:32:67:0.493:2	0/1:6,15:32:21:0.714:2	./.	0/1:40,23:33:63:0.365:2	./.	./.	./.	./.	./.	./.	./.
chr6	88366708	rs2307373	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:24,18:31:42:0.429:2	0/1:12,9:31:21:0.429:2	./.	0/1:34,22:28:56:0.393:2	./.	./.	0/1:1,38:29:39:0.974:2	./.	0/1:27,20:29:47:0.426:2	0/1:31,20:28:51:0.392:2	0/1:0,26:29:26:1.00:2
chr6	88387629	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:31:107:0.037:2	./.	./.
chr6	88387684	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:34:80:0.050:2	./.	./.
chr6	88853635	rs1049353	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,194:32:194:1.00:2	./.	./.	0/1:102,83:33:185:0.449:2	0/1:103,62:33:165:0.376:2	0/1:67,42:33:109:0.385:2	./.
chr6	88854670	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,5:30:61:0.082:2	./.	./.	./.	./.	./.	./.	./.
chr6	89322437	rs147871163	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,66:30:152:0.434:2	./.	./.	./.	./.
chr6	89388023	rs11753513	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,18:33:34:0.529:2	0/1:3,9:32:12:0.750:2	0/1:0,4:32:4:1.00:2	0/1:17,17:33:34:0.500:2	./.	0/1:0,23:31:23:1.00:2	0/1:9,9:32:18:0.500:2	0/1:0,21:32:21:1.00:2	./.	0/1:1,19:33:20:0.950:2	./.
chr6	89601545	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	89793894	rs1130809	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:26,18:32:44:0.409:2	0/1:15,18:33:33:0.545:2	./.	./.	./.	./.	./.	0/1:43,13:32:56:0.232:2	./.	./.	./.
chr6	89888744	rs1796743	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:26,27:32:53:0.509:2	0/1:24,21:32:45:0.467:2	./.	0/1:48,37:31:85:0.435:2	./.	./.	./.	0/1:72,46:31:118:0.390:2	./.	./.	./.
chr6	89907752	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:33:87:0.046:2	./.
chr6	89907873	rs422751	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,91:31:91:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,16:31:16:1.00:2	0/1:79,64:30:143:0.448:2	0/1:0,142:32:142:1.00:2	0/1:0,142:31:142:1.00:2	0/1:92,88:31:180:0.489:2	0/1:6,139:31:145:0.959:2	0/1:0,122:32:122:1.00:2	0/1:72,54:31:126:0.429:2	0/1:67,60:31:127:0.472:2
chr6	89913209	rs4590242	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:31:65:1.00:2	0/1:0,52:31:52:1.00:2	0/1:12,5:30:17:0.294:2	0/1:2,102:31:104:0.981:2	./.	0/1:0,89:31:89:1.00:2	0/1:0,84:32:84:1.00:2	0/1:92,37:31:129:0.287:2	0/1:71,30:33:101:0.297:2	0/1:54,36:31:90:0.400:2	0/1:0,102:32:102:1.00:2
chr6	89913218	rs4445034	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:31:56:1.00:2	0/1:0,44:32:44:1.00:2	0/1:9,5:31:14:0.357:2	0/1:2,87:30:89:0.978:2	./.	0/1:0,79:31:79:1.00:2	0/1:0,69:31:69:1.00:2	0/1:66,31:31:97:0.320:2	0/1:60,26:32:86:0.302:2	0/1:44,32:30:76:0.421:2	0/1:0,94:31:94:1.00:2
chr6	89926962	rs1186902	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,44:29:100:0.440:2	0/1:25,31:29:56:0.554:2	0/1:0,14:28:14:1.00:2	0/1:75,66:29:141:0.468:2	./.	0/1:0,119:29:119:1.00:2	0/1:47,60:30:107:0.561:2	0/1:83,76:29:159:0.478:2	./.	./.	0/1:2,142:29:144:0.986:2
chr6	89926966	rs12200969	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,45:32:91:0.495:2	0/1:33,22:32:55:0.400:2	./.	./.	./.	./.	./.	./.	0/1:64,81:33:145:0.559:2	0/1:49,40:31:89:0.449:2	./.
chr6	89974321	rs371695052	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:34:139:0.029:2	./.	./.
chr6	89975412	rs76652344	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,15:17:110:0.136:2	./.	./.	./.	./.	./.	./.	./.
chr6	89975446	rs76786334	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,40:30:84:0.476:2
chr6	89981413	rs282117	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:35:2:1.00:2	0/1:0,49:32:49:1.00:2	0/1:35,41:31:76:0.539:2	0/1:0,70:32:70:1.00:2	0/1:52,45:32:97:0.464:2	0/1:36,41:32:77:0.532:2	0/1:0,48:32:48:1.00:2	0/1:27,16:32:43:0.372:2	0/1:0,51:33:51:1.00:2
chr6	90039670	rs10502	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,2:36:4:0.500:2	0/1:0,33:32:33:1.00:2	0/1:21,7:32:28:0.250:2	0/1:15,16:32:31:0.516:2	0/1:17,21:32:38:0.553:2	./.	0/1:16,14:33:30:0.467:2	0/1:15,16:31:31:0.516:2	0/1:26,18:32:44:0.409:2
chr6	90315789	rs3748085	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:30:50:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,6:30:6:1.00:2	0/1:1,51:30:52:0.981:2	0/1:2,86:31:89:0.977:2	0/1:38,31:30:69:0.449:2	0/1:57,34:30:91:0.374:2	0/1:45,49:30:94:0.521:2	0/1:0,71:31:71:1.00:2	0/1:42,32:31:74:0.432:2	0/1:0,70:30:70:1.00:2
chr6	90333599	rs17292811	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:28:58:1.00:2	0/1:0,31:28:31:1.00:2	0/1:7,4:27:11:0.364:2	0/1:0,69:29:69:1.00:2	0/1:0,55:27:55:1.00:2	0/1:0,70:27:70:1.00:2	0/1:39,35:27:74:0.473:2	0/1:0,106:28:106:1.00:2	0/1:34,32:29:66:0.485:2	0/1:0,67:28:67:1.00:2	0/1:0,81:28:81:1.00:2
chr6	90338863	rs9353687	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,4:30:16:0.250:2	./.	./.	0/1:6,12:29:18:0.667:2	./.	0/1:6,10:29:16:0.625:2	./.
chr6	90340276	rs3210511	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,22:31:72:0.306:2	0/1:0,52:31:52:1.00:2	0/1:41,37:31:78:0.474:2	./.	0/1:46,37:32:83:0.446:2	./.	0/1:26,18:32:44:0.409:2	0/1:33,30:30:63:0.476:2
chr6	90340446	rs61739327	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,13:30:35:0.371:2	0/1:10,12:30:22:0.545:2	./.	./.	./.	0/1:11,15:30:26:0.577:2	0/1:21,13:29:34:0.382:2	0/1:14,20:28:34:0.588:2	./.	0/1:13,13:29:26:0.500:2	./.
chr6	90347064	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:31:167:0.024:2
chr6	90347511	rs34012596	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:74,58:33:132:0.439:2	0/1:50,32:33:82:0.390:2	./.	0/1:82,72:33:154:0.468:2	./.	./.	./.	./.	0/1:99,87:34:186:0.468:2	./.	0/1:100,84:33:184:0.457:2
chr6	90362783	rs4707557	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,4:34:188:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr6	90368380	rs34732313	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,50:33:128:0.391:2	0/1:37,24:33:61:0.393:2	./.	./.	./.	0/1:91,81:32:172:0.471:2	0/1:110,73:32:183:0.399:2	0/1:100,87:32:187:0.465:2	./.	0/1:69,49:31:118:0.415:2	./.
chr6	90368409	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:33:146:0.027:2	./.
chr6	90371202	rs9444701	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:75,68:32:143:0.476:2	0/1:47,37:32:84:0.440:2	0/1:12,4:32:16:0.250:2	0/1:2,125:32:127:0.984:2	0/1:2,128:31:130:0.985:2	0/1:81,69:31:150:0.460:2	./.	0/1:76,83:32:159:0.522:2	0/1:84,71:32:155:0.458:2	0/1:103,65:31:168:0.387:2	0/1:0,140:32:140:1.00:2
chr6	90372574	rs36040566	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,91:32:186:0.489:2	0/1:63,55:32:118:0.466:2	./.	./.	./.	0/1:82,72:32:154:0.468:2	0/1:105,88:32:193:0.456:2	0/1:105,69:32:176:0.397:2	./.	0/1:85,71:32:156:0.455:2	./.
chr6	90383854	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,2:36:7:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	90387353	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:31:77:0.052:2	./.	./.	./.	./.	./.
chr6	90390443	rs9353689	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,19:32:43:0.442:2	0/1:1,58:32:59:0.983:2	0/1:25,24:32:49:0.490:2	./.	0/1:32,34:32:66:0.515:2	./.	0/1:20,22:32:42:0.524:2	0/1:19,20:33:39:0.513:2
chr6	90392998	rs148554959	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:32:72:0.056:2	./.	./.	./.	./.	./.
chr6	90397132	rs34766278	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,22:32:43:0.512:2	0/1:13,14:31:27:0.519:2	./.	./.	./.	0/1:32,23:32:55:0.418:2	0/1:20,29:32:50:0.592:2	0/1:34,36:32:70:0.514:2	./.	0/1:30,15:32:45:0.333:2	./.
chr6	90402482	rs9294445	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,4:30:11:0.364:2	0/1:60,33:32:93:0.355:2	0/1:1,97:30:98:0.990:2	0/1:37,39:30:76:0.513:2	./.	0/1:62,56:31:118:0.475:2	./.	0/1:24,38:32:62:0.613:2	0/1:47,35:31:82:0.427:2
chr6	90402840	rs9351212	C	G,A	.	PASS	AC=6,1;AF=0.286,0.048;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:BQ:DP:FA:SS	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	0/1:31:14:0.714:2	./.	0/1:31:48:0.979:2	0/1:30:46:0.957:2	0/1:31:52:0.481:2	0/1:31:56:1.00:2	0/2:32:67:0.552:2	0/1:31:37:1.00:2	./.
chr6	90408589	rs3736984	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,12:32:23:0.522:2	0/1:4,5:32:9:0.556:2	./.	./.	./.	0/1:11,22:32:33:0.667:2	0/1:20,15:33:35:0.429:2	0/1:22,9:33:31:0.290:2	./.	0/1:15,7:33:22:0.318:2	./.
chr6	90408742	rs12530146	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:31:11:0.364:2	./.	./.	./.	./.	./.
chr6	90418262	rs2026634	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,58:33:58:1.00:2	0/1:0,27:33:27:1.00:2	./.	0/1:0,73:33:73:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,64:32:64:1.00:2	0/1:31,23:33:54:0.426:2	0/1:1,69:33:70:0.986:2	0/1:62,35:34:97:0.361:2	0/1:0,54:32:54:1.00:2	0/1:0,70:32:70:1.00:2
chr6	90418331	rs55729223	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:18,17:33:35:0.486:2	0/1:5,16:30:21:0.762:2	./.	0/1:16,15:32:31:0.484:2	./.	./.	./.	./.	0/1:37,26:32:63:0.413:2	./.	0/1:17,31:33:48:0.646:2
chr6	90448092	rs4140446	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:32:87:1.00:2	0/1:0,56:32:56:1.00:2	0/1:5,7:30:12:0.583:2	0/1:0,139:31:139:1.00:2	0/1:1,92:31:93:0.989:2	0/1:0,87:31:87:1.00:2	0/1:75,42:32:117:0.359:2	0/1:0,101:32:101:1.00:2	0/1:90,66:33:156:0.423:2	0/1:0,102:32:102:1.00:2	0/1:0,162:32:162:1.00:2
chr6	90455084	rs9359861	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,56:32:57:0.982:2	0/1:0,34:32:34:1.00:2	0/1:12,4:31:16:0.250:2	0/1:0,86:32:86:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,123:32:123:1.00:2	0/1:81,44:33:125:0.352:2	0/1:0,112:31:112:1.00:2	0/1:58,37:33:95:0.389:2	0/1:0,85:32:85:1.00:2	0/1:0,90:33:90:1.00:2
chr6	90455087	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,4:31:88:0.045:2	./.	./.	./.	./.	./.	./.	./.
chr6	90459454	rs4053618	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,14:33:27:0.519:2	0/1:14,12:33:26:0.462:2	0/1:0,6:32:6:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,29:32:29:1.00:2	0/1:23,9:32:32:0.281:2	0/1:10,19:31:29:0.655:2	0/1:18,16:32:34:0.471:2	0/1:0,41:33:41:1.00:2	0/1:17,23:32:40:0.575:2	0/1:0,42:33:42:1.00:2
chr6	90463314	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:34:100:0.040:2	./.	./.
chr6	90482397	rs12110451	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,32:29:56:0.571:2	./.	./.	0/1:26,27:29:53:0.509:2	./.	0/1:17,24:28:41:0.585:2	./.
chr6	90486325	rs41402447	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:59,65:32:125:0.524:2	0/1:47,37:32:84:0.440:2	./.	0/1:65,89:33:154:0.578:2	./.	./.	./.	./.	0/1:79,79:33:158:0.500:2	./.	0/1:74,82:33:156:0.526:2
chr6	90497589	rs4707569	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,9:32:19:0.474:2	./.	./.	0/1:6,11:30:17:0.647:2	./.	./.	./.
chr6	90499502	rs1036853	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,19:32:48:0.396:2	0/1:24,10:32:34:0.294:2	./.	./.	./.	0/1:32,22:32:54:0.407:2	0/1:31,30:31:61:0.492:2	0/1:26,24:32:50:0.480:2	./.	0/1:32,27:33:59:0.458:2	./.
chr6	90565242	rs369328	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,38:32:38:1.00:2	0/1:0,13:32:13:1.00:2	./.	0/1:17,21:33:38:0.553:2	./.	0/1:9,12:31:21:0.571:2	0/1:7,9:32:16:0.563:2	0/1:11,15:33:26:0.577:2	0/1:7,16:33:23:0.696:2	0/1:16,16:32:32:0.500:2	0/1:17,19:33:36:0.528:2
chr6	90575900	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:35:66:0.061:2
chr6	90576763	rs200866261	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,10:30:22:0.476:2	0/1:4,4:31:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	90577547	rs75601500	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,9:18:113:0.080:2	./.	0/1:112,12:17:124:0.097:2	./.	0/1:103,10:16:113:0.088:2	./.	./.	0/1:105,14:20:119:0.118:2
chr6	90577602	rs60966143	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:59,42:32:101:0.416:2	0/1:46,39:32:85:0.459:2	./.	0/1:77,85:33:162:0.525:2	./.	./.	./.	./.	0/1:83,82:34:165:0.497:2	./.	0/1:81,82:33:164:0.503:2
chr6	90642358	rs3798789	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,15:32:38:0.395:2	./.	./.
chr6	90660319	rs9451298	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,15:31:31:0.484:2	0/1:32,32:31:64:0.500:2	./.	0/1:24,26:30:50:0.520:2	./.	./.	0/1:13,12:30:25:0.480:2	0/1:10,13:32:23:0.565:2
chr6	90661576	rs2236181	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,50:28:107:0.467:2	0/1:49,36:28:85:0.424:2	0/1:49,48:27:97:0.495:2	0/1:56,66:29:122:0.541:2	./.	./.	0/1:0,84:28:84:1.00:2	0/1:54,55:28:109:0.505:2
chr6	93967851	rs345730	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,13:30:38:0.342:2	0/1:15,13:32:28:0.464:2	0/1:0,3:31:3:1.00:2	0/1:24,17:32:41:0.415:2	0/1:15,11:31:26:0.423:2	0/1:0,38:31:38:1.00:2	0/1:17,19:32:36:0.528:2	0/1:0,44:32:44:1.00:2	0/1:0,39:32:39:1.00:2	0/1:23,22:32:45:0.489:2	0/1:27,32:32:59:0.542:2
chr6	93973569	rs345725	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,3:33:40:0.075:2	./.	./.	./.
chr6	93982124	rs345713	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,112:31:112:1.00:2	0/1:0,51:31:51:1.00:2	0/1:2,12:31:14:0.857:2	0/1:60,71:31:131:0.542:2	0/1:0,75:31:75:1.00:2	0/1:0,102:31:102:1.00:2	0/1:0,110:30:110:1.00:2	0/1:0,104:30:104:1.00:2	0/1:0,128:32:128:1.00:2	0/1:0,90:31:90:1.00:2	0/1:65,52:31:117:0.444:2
chr6	94067981	rs164544	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:32:44:1.00:2	0/1:1,22:32:23:0.957:2	0/1:0,10:32:10:1.00:2	0/1:0,63:32:63:1.00:2	0/1:28,16:31:44:0.364:2	0/1:32,42:31:74:0.568:2	0/1:27,27:31:54:0.500:2	0/1:52,28:31:80:0.350:2	0/1:66,43:32:109:0.394:2	./.	./.
chr6	96034560	rs62417812	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,6:31:20:0.300:2	./.	./.	./.	./.	./.
chr6	96034612	rs62417813	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,14:29:27:0.519:2	./.	./.	./.	./.	./.
chr6	96034844	rs62619206	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,13:32:23:0.565:2	0/1:5,3:33:8:0.375:2	./.	./.	./.	./.	./.	./.	0/1:28,15:31:43:0.349:2	0/1:12,14:33:26:0.538:2	./.
chr6	96034881	rs112818736	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,6:32:19:0.316:2	./.	./.	./.	./.	./.	./.	./.
chr6	96035175	rs9374586	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:33:40:1.00:2	0/1:0,22:33:22:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,24:33:24:1.00:2	0/1:15,24:32:39:0.615:2	0/1:24,27:32:51:0.529:2	0/1:1,24:33:25:0.960:2	0/1:0,24:32:24:1.00:2	0/1:8,24:33:32:0.750:2	0/1:1,25:32:26:0.962:2	0/1:0,49:32:49:1.00:2
chr6	96052716	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,27:33:75:0.360:2	./.	./.	./.	./.
chr6	96053922	rs35772543	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,17:32:27:0.630:2	./.	./.	./.	./.	./.	0/1:28,20:32:48:0.417:2
chr6	96054262	rs75510775	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:1,6:29:7:0.857:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,5:28:7:0.714:2	./.
chr6	96651546	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:34:109:0.037:2	./.	./.
chr6	96651740	rs3811069	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,16:32:17:1.00:2	0/1:0,25:33:26:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,18:34:18:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,29:32:29:1.00:2
chr6	96652371	rs4078339	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,123:33:123:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,121:33:121:1.00:2	0/1:1,99:33:101:0.990:2	0/1:0,118:32:118:1.00:2	0/1:2,112:32:114:0.982:2	0/1:1,160:33:161:0.994:2	0/1:0,171:33:171:1.00:2	0/1:0,134:32:134:1.00:2	0/1:0,157:33:157:1.00:2
chr6	96652455	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:35:155:0.026:2	./.
chr6	96652582	rs4454149	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,115:32:115:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,9:26:9:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,90:31:90:1.00:2	0/1:0,79:30:79:1.00:2	0/1:0,97:31:97:1.00:2	0/1:0,103:33:103:1.00:2	0/1:1,74:32:75:0.987:2	0/1:0,112:32:112:1.00:2
chr6	96652706	rs4440473	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:33:43:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,39:33:39:1.00:2	0/1:1,33:32:34:0.971:2	0/1:0,41:32:41:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,47:33:47:1.00:2
chr6	96653038	rs4270796	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,7:32:7:1.00:2	0/1:1,59:32:60:0.983:2	0/1:0,29:32:29:1.00:2	0/1:0,56:31:57:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,76:33:76:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,105:32:106:1.00:2
chr6	96653208	rs3934926	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:33:51:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,60:33:60:1.00:2	0/1:0,62:33:62:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,87:33:87:1.00:2
chr6	96653478	rs4275065	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:31:44:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,2:34:2:1.00:2	0/1:1,20:31:21:0.952:2	0/1:0,15:30:15:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,40:31:40:1.00:2
chr6	96653489	rs4132773	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,12:28:35:0.343:2	0/1:15,4:26:19:0.211:2	./.	0/1:0,19:27:19:1.00:2	0/1:5,6:27:11:0.545:2	0/1:13,6:25:19:0.316:2	./.	0/1:16,13:27:29:0.448:2	./.	0/1:8,10:28:18:0.556:2	0/1:18,14:29:32:0.438:2
chr6	96653935	rs4240604	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:30:41:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,4:29:4:1.00:2	0/1:1,44:29:45:0.978:2	0/1:0,33:29:33:1.00:2	0/1:0,60:29:60:1.00:2	0/1:0,26:29:26:1.00:2	0/1:2,22:30:24:0.917:2	0/1:0,38:31:38:1.00:2	0/1:0,35:29:35:1.00:2	0/1:0,65:29:65:1.00:2
chr6	96654805	rs9373717	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,138:33:138:1.00:2	0/1:0,93:33:93:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,164:33:164:1.00:2	0/1:0,161:32:161:1.00:2	0/1:1,166:33:167:0.994:2	0/1:1,153:33:154:0.994:2	0/1:0,170:33:170:1.00:2	0/1:0,155:34:155:1.00:2	0/1:0,159:33:159:1.00:2	0/1:0,158:33:158:1.00:2
chr6	96654983	rs9404452	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,14:32:14:1.00:2	0/1:0,11:32:11:1.00:2	./.	0/1:0,17:32:17:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,18:32:18:1.00:2
chr6	96655017	rs11968616	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,6:34:15:0.400:2	0/1:2,4:32:6:0.667:2	./.	0/1:0,8:34:8:1.00:2	0/1:5,4:32:9:0.444:2	0/1:10,6:32:16:0.375:2	./.	./.	./.	0/1:3,5:34:8:0.625:2	0/1:3,5:29:8:0.625:2
chr6	96655096	rs76422396	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,23:33:24:0.958:2	0/1:18,9:33:27:0.333:2	0/1:8,12:32:20:0.600:2	./.	0/1:3,6:32:9:0.667:2	./.	0/1:5,11:32:16:0.688:2	0/1:11,16:33:27:0.593:2
chr6	96655105	rs71834434	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:27:25:1.00:2	0/1:0,15:27:15:1.00:2	0/1:0,2:28:2:1.00:2	0/1:7,17:28:24:0.708:2	0/1:1,27:26:28:0.964:2	0/1:0,17:28:17:1.00:2	0/1:2,14:28:16:0.875:2	0/1:0,8:27:8:1.00:2	0/1:0,30:28:30:1.00:2	0/1:0,16:28:16:1.00:2	0/1:1,30:27:31:0.968:2
chr6	96655106	rs34744508	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,7:31:26:0.269:2	./.	./.	./.	./.	./.	./.	./.
chr6	96655201	rs148386293	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,25:32:66:0.379:2	./.	0/1:36,22:33:58:0.379:2	./.
chr6	96655254	rs12212512	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,55:33:111:0.495:2	0/1:37,26:32:63:0.413:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,71:33:132:0.538:2
chr6	96656129	rs7738590	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,4:32:4:1.00:2	0/1:1,26:31:27:0.963:2	0/1:0,24:32:24:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,15:30:16:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,35:31:35:1.00:2
chr6	96656649	rs9373720	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,19:33:50:0.380:2	0/1:12,13:32:25:0.520:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,18:33:43:0.419:2
chr6	96656753	rs72927046	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,30:33:65:0.462:2	0/1:21,9:31:30:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	96656767	rs4632899	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:32:66:1.00:2	0/1:0,40:33:40:1.00:2	0/1:1,6:33:7:0.857:2	0/1:1,45:32:46:0.978:2	0/1:0,38:31:38:1.00:2	0/1:0,36:32:36:1.00:2	0/1:1,24:32:25:0.960:2	0/1:0,46:32:46:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,74:32:74:1.00:2
chr6	96656811	rs12206407	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,10:31:14:0.714:2	./.	0/1:32,28:29:60:0.467:2	./.	0/1:2,48:30:51:0.960:2	0/1:62,36:29:98:0.367:2	0/1:63,43:30:106:0.406:2	0/1:50,32:30:82:0.390:2	./.
chr6	96657074	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:32:108:0.037:2	./.	./.	./.	./.	./.
chr6	96657328	rs9386381	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:32:60:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,76:32:76:1.00:2	0/1:2,46:32:48:0.958:2	0/1:0,54:32:54:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,60:32:60:1.00:2
chr6	96657340	rs9386382	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:31:39:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,38:31:38:1.00:2
chr6	96657341	rs9399842	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:31:39:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,31:29:31:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,38:30:38:1.00:2
chr6	96657571	rs17726532	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,14:32:37:0.378:2	0/1:20,5:32:27:0.200:2	0/1:3,3:31:6:0.500:2	0/1:0,58:30:58:1.00:2	0/1:22,12:31:34:0.353:2	0/1:27,22:30:49:0.449:2	./.	0/1:21,34:30:56:0.618:2	./.	0/1:22,14:32:36:0.389:2	0/1:39,28:31:67:0.418:2
chr6	96657824	rs13220369	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:33:5:0.800:2	./.	0/1:17,11:33:28:0.393:2	./.	0/1:0,34:32:34:1.00:2	0/1:35,26:32:61:0.426:2	0/1:33,32:33:65:0.492:2	0/1:38,21:34:59:0.356:2	./.
chr6	96658030	rs12213730	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,19:31:32:0.594:2	0/1:7,11:31:18:0.611:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,20:30:50:0.400:2
chr6	96658101	rs181438250	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,6:31:18:0.333:2	./.	./.	./.	./.	./.
chr6	96658152	rs4602726	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:33:29:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,46:34:46:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,72:33:72:1.00:2
chr6	96658203	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:33:77:0.052:2	./.	./.
chr6	96658260	rs4240605	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:33:43:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,2:28:2:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,72:32:72:1.00:2
chr6	96658262	rs4240606	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:33:43:1.00:2	0/1:0,37:33:37:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,72:32:72:1.00:2
chr6	96658435	rs4621639	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:32:25:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,34:32:34:1.00:2
chr6	96658638	rs4840245	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:32:87:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,9:32:9:1.00:2	0/1:2,91:32:93:0.978:2	0/1:0,44:32:44:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,88:31:88:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,135:32:135:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,120:32:120:1.00:2
chr6	96658670	rs17056459	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,6:32:11:0.545:2	0/1:38,34:33:72:0.472:2	./.	./.	./.	./.	./.	0/1:39,35:32:74:0.473:2	./.
chr6	96659191	rs9386384	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:32:56:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,9:31:9:1.00:2	0/1:1,57:31:58:0.983:2	0/1:0,58:31:58:1.00:2	0/1:0,82:31:82:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,73:31:74:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,87:32:87:1.00:2
chr6	96659589	rs4475334	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,20:32:20:1.00:2	./.	0/1:1,18:33:19:0.947:2	0/1:0,14:31:14:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,42:32:42:1.00:2
chr6	96659677	rs9399845	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,11:30:11:1.00:2	0/1:4,4:32:8:0.500:2	0/1:1,2:34:3:0.667:2	0/1:4,3:25:7:0.429:2	./.
chr6	96659984	rs73757758	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,13:31:41:0.317:2	./.	./.	0/1:14,12:33:26:0.462:2	./.	./.
chr6	96660070	rs17056460	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,20:31:37:0.541:2	./.	./.	0/1:22,12:33:34:0.353:2	./.	./.
chr6	96660114	rs7745248	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,23:31:49:0.469:2	0/1:17,17:31:34:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,36:32:83:0.434:2
chr6	96660431	rs9499636	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,11:32:26:0.423:2	./.	./.	0/1:12,12:34:24:0.500:2	./.	./.
chr6	96660726	rs6571134	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:29:30:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,2:29:2:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,20:28:20:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,13:29:13:1.00:2	0/1:0,29:29:29:1.00:2
chr6	96660961	rs144544540	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:32:13:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	96661036	rs4582393	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,66:32:66:1.00:2
chr6	96661062	rs4458699	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:31:49:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,54:31:54:1.00:2
chr6	96661133	rs75908201	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,22:31:55:0.400:2	./.	./.	./.	./.	./.	./.
chr6	96661315	rs6571135	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,63:32:63:1.00:2	0/1:1,51:33:52:0.981:2	0/1:0,50:33:50:1.00:2	0/1:0,76:33:76:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,61:32:62:1.00:2
chr6	96661410	rs7745157	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:30:52:1.00:2	0/1:0,43:28:43:1.00:2	0/1:0,13:29:13:1.00:2	0/1:0,73:29:73:1.00:2	0/1:0,35:28:35:1.00:2	0/1:0,49:28:49:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,40:29:40:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,39:28:39:1.00:2	0/1:0,84:28:84:1.00:2
chr6	96662438	rs12215829	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,29:33:57:0.509:2	0/1:13,19:32:32:0.594:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,40:32:73:0.548:2
chr6	96662601	rs12190371	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:33:12:0.583:2	./.	0/1:43,25:32:68:0.368:2	./.	0/1:0,75:32:75:1.00:2	0/1:64,51:32:115:0.443:2	0/1:82,66:33:148:0.446:2	0/1:55,47:33:102:0.461:2	./.
chr6	96662915	rs3827786	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:32:62:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,40:32:40:1.00:2	0/1:1,56:31:57:0.982:2	0/1:0,65:30:65:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,65:32:65:1.00:2
chr6	96663059	rs12213218	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,35:32:75:0.467:2	0/1:11,20:32:31:0.645:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,51:31:95:0.537:2
chr6	96969755	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,4:33:62:0.065:2	./.	./.	./.	./.	./.	./.	./.
chr6	96985311	rs55792562	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,42:32:78:0.538:2	./.	./.	./.	./.	./.
chr6	96985342	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:32:114:0.035:2	./.	./.	./.	./.	./.
chr6	96999725	rs1127175	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:31:14:0.571:2	./.	0/1:35,27:30:62:0.435:2	0/1:79,45:31:124:0.363:2	0/1:42,16:32:58:0.276:2	0/1:0,86:31:86:1.00:2	0/1:64,40:32:104:0.385:2	0/1:55,46:32:101:0.455:2	0/1:0,144:32:144:1.00:2
chr6	97051593	rs35157931	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,64:32:135:0.474:2	./.	./.	./.	./.	0/1:62,57:33:119:0.479:2	./.	./.
chr6	97052754	rs2064947	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,26:32:64:0.406:2	0/1:26,26:32:52:0.500:2	./.	0/1:0,54:32:54:1.00:2
chr6	97058553	rs2273621	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,9:30:17:0.529:2	./.	./.	0/1:84,95:30:179:0.531:2	0/1:102,72:31:175:0.414:2	0/1:2,188:30:190:0.989:2	0/1:83,91:31:174:0.523:2	0/1:72,83:29:155:0.535:2	0/1:2,149:31:151:0.987:2
chr6	97058567	rs2273622	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,9:30:17:0.529:2	./.	./.	./.	./.	0/1:101,84:29:185:0.454:2	0/1:86,88:31:174:0.506:2	./.	0/1:2,145:30:147:0.986:2
chr6	97058574	rs2252816	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:98,79:32:177:0.446:2	0/1:79,39:31:118:0.331:2	./.	0/1:1,172:31:173:0.994:2	0/1:78,54:31:132:0.409:2	0/1:88,71:31:159:0.447:2	0/1:80,89:32:169:0.527:2	./.	0/1:91,73:32:164:0.445:2	0/1:81,67:32:148:0.453:2	./.
chr6	97063496	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:32:82:0.050:2	./.	./.	./.	./.
chr6	97063522	rs9373985	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,8:32:9:0.889:2	./.	./.	0/1:40,46:33:86:0.535:2	0/1:49,37:33:86:0.430:2	0/1:0,87:32:87:1.00:2	0/1:68,53:33:121:0.438:2	0/1:35,37:32:72:0.514:2	0/1:45,40:33:85:0.471:2
chr6	97063555	rs9398148	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:30:7:0.714:2	./.	./.	0/1:32,45:32:77:0.584:2	0/1:41,32:33:73:0.438:2	0/1:1,61:32:62:0.984:2	0/1:55,41:33:96:0.427:2	0/1:35,30:32:65:0.462:2	0/1:48,36:30:84:0.429:2
chr6	97246672	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:35:71:0.056:2	./.
chr6	97247547	rs35358396	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,49:31:114:0.430:2	./.	./.	./.	./.	./.	./.
chr6	97339078	rs6684	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,45:33:45:1.00:2	0/1:0,36:33:36:1.00:2	0/1:4,5:33:9:0.556:2	./.	0/1:1,24:33:25:0.960:2	./.	./.	0/1:1,51:32:52:0.981:2	0/1:0,70:34:70:1.00:2	0/1:0,37:33:37:1.00:2	0/1:0,79:33:79:1.00:2
chr6	97339088	rs11402	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:32:53:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,70:33:70:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,78:33:78:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,84:33:84:1.00:2
chr6	97562207	rs74787311	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,12:32:30:0.400:2	0/1:12,5:28:17:0.294:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	97580539	rs13208956	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,19:33:41:0.463:2	./.	./.	./.	./.	./.	./.	./.
chr6	97613163	rs1209290	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:31:54:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,5:30:5:1.00:2	0/1:42,33:29:75:0.440:2	0/1:3,60:30:63:0.952:2	0/1:0,104:30:104:1.00:2	./.	./.	0/1:42,46:32:88:0.523:2	0/1:0,57:31:57:1.00:2	0/1:0,77:30:77:1.00:2
chr6	97613299	rs10484830	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,28:33:87:0.322:2	./.	./.	./.	./.	./.	./.	./.
chr6	97626374	rs1737145	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,96:33:99:0.970:2	0/1:0,66:33:66:1.00:2	0/1:0,6:33:6:1.00:2	0/1:92,4:33:97:0.042:2	0/1:0,66:32:66:1.00:2	0/1:3,80:33:83:0.964:2	./.	./.	0/1:73,47:33:120:0.392:2	0/1:0,68:33:68:1.00:2	0/1:0,131:33:131:1.00:2
chr6	97629883	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,3:32:49:0.061:2	./.	./.	./.	./.
chr6	97676910	rs143143212	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,64:32:144:0.444:2	./.
chr6	97677118	rs9481410	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,56:32:56:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,13:31:13:1.00:2	./.	0/1:1,47:32:48:0.979:2	0/1:0,57:31:57:1.00:2	0/1:0,65:32:65:1.00:2	./.	0/1:1,85:33:86:0.988:2	0/1:0,59:32:59:1.00:2	0/1:0,84:32:84:1.00:2
chr6	97702539	rs368168206	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:31:44:0.091:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	99284532	rs3823036	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,43:30:44:0.977:2	0/1:0,31:30:31:1.00:2	./.	./.	./.	0/1:43,29:30:72:0.403:2	./.	0/1:39,24:30:63:0.381:2	0/1:35,21:30:56:0.375:2	./.	0/1:38,33:31:71:0.465:2
chr6	99284984	rs33999841	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,20:33:47:0.426:2	./.	./.	./.	./.
chr6	99285180	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,6:29:60:0.100:2	./.	./.	./.	./.
chr6	99285586	rs138384155	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,10:27:30:0.345:2	./.	./.	./.	./.	./.	./.
chr6	99285636	rs66683016	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	./.	./.	0/1:10,11:34:21:0.524:2	./.	./.	./.	./.
chr6	99323424	rs11537982	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:31:10:0.300:2	./.	./.	./.	0/1:51,45:31:96:0.469:2	./.	./.	./.	./.
chr6	99374400	rs1011676	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,50:32:92:0.543:2	./.	./.	./.	./.	./.	./.	./.
chr6	99374455	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,6:33:100:0.060:2	./.	./.	./.	./.	./.	./.
chr6	99374760	rs34316889	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,20:31:76:0.263:2	./.
chr6	99771540	rs221527	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,33:30:73:0.452:2	0/1:33,35:28:68:0.515:2	0/1:0,11:27:11:1.00:2	0/1:1,123:29:124:0.992:2	0/1:0,72:28:72:1.00:2	0/1:0,88:28:88:1.00:2	0/1:0,76:28:76:1.00:2	0/1:54,39:28:93:0.419:2	./.	0/1:0,64:28:64:1.00:2	0/1:0,85:28:85:1.00:2
chr6	99817601	rs4144164	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:33:55:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,112:33:112:1.00:2	0/1:0,85:33:85:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,83:33:83:1.00:2	0/1:2,122:33:124:0.984:2	0/1:0,133:33:133:1.00:2	0/1:0,77:33:77:1.00:2	0/1:0,107:32:107:1.00:2
chr6	99819311	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,3:36:47:0.064:2	./.
chr6	99819379	rs6925344	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:33:42:1.00:2	0/1:0,47:33:47:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,46:32:46:1.00:2	./.	0/1:25,21:32:46:0.457:2	0/1:0,85:34:85:1.00:2	./.	0/1:0,70:33:70:1.00:2
chr6	99825348	rs11548336	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,17:31:32:0.531:2	0/1:5,6:32:11:0.545:2	./.	./.	0/1:0,9:30:9:1.00:2	0/1:22,11:31:33:0.333:2	./.	./.	./.	./.	./.
chr6	99842056	rs9376137	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,4:31:23:0.174:2	0/1:10,8:31:18:0.444:2	0/1:10,7:29:17:0.412:2	./.	0/1:5,5:31:10:0.500:2	./.	./.	./.
chr6	99854021	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:33:166:0.024:2	./.	./.
chr6	99862490	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:33:148:0.027:2	./.	./.	./.	./.	./.
chr6	99883694	rs9402791	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,19:30:52:0.365:2	0/1:25,10:30:35:0.286:2	0/1:29,8:28:37:0.216:2	./.	0/1:20,33:30:53:0.623:2	./.	./.	./.
chr6	99883704	rs6570065	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:32:30:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,44:33:44:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,55:33:55:1.00:2
chr6	99883842	rs7745005	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,7:29:7:1.00:2	0/1:0,5:28:5:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,5:26:6:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,10:30:10:1.00:2
chr6	99893878	rs12203426	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,13:33:19:0.684:2	0/1:2,8:33:10:0.800:2	./.	./.	./.	./.	./.	./.	0/1:0,15:32:15:1.00:2	./.	./.
chr6	99893938	rs4504482	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,12:32:20:0.600:2	0/1:0,16:32:16:1.00:2	0/1:0,16:32:16:1.00:2	0/1:9,4:34:13:0.308:2	0/1:0,15:32:15:1.00:2	./.	./.	./.
chr6	99894086	rs41288947	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:32:11:0.455:2	./.	./.	./.	./.	./.	./.	0/1:26,31:33:57:0.544:2	0/1:0,72:33:72:1.00:2
chr6	99956560	rs7744845	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:48,34:33:82:0.415:2	0/1:0,37:32:37:1.00:2	0/1:1,69:32:70:0.986:2	./.	0/1:44,48:33:92:0.522:2	./.	./.	./.
chr6	100390957	rs62434070	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,69:33:151:0.460:2	./.	./.	./.	./.
chr6	100395802	rs74531963	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,38:29:77:0.494:2	0/1:36,26:29:62:0.419:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	100868721	rs3734355	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:44,31:30:75:0.413:2	0/1:30,15:31:45:0.333:2	./.	./.	0/1:48,16:31:64:0.250:2	./.	0/1:45,25:31:70:0.357:2	0/1:35,26:30:61:0.426:2	./.	./.	0/1:52,46:30:98:0.469:2
chr6	100868779	rs3734354	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:60,41:31:101:0.406:2	0/1:36,21:31:57:0.368:2	./.	./.	0/1:56,45:31:101:0.446:2	./.	0/1:74,34:31:108:0.315:2	0/1:59,55:31:114:0.482:2	./.	./.	0/1:54,56:32:110:0.509:2
chr6	100964147	rs240780	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,41:32:74:0.554:2	0/1:17,13:32:30:0.433:2	./.	0/1:41,36:32:77:0.468:2	0/1:40,33:31:73:0.452:2	0/1:52,60:31:112:0.536:2	./.	0/1:0,97:31:97:1.00:2	./.	0/1:0,73:31:73:1.00:2	0/1:57,41:31:98:0.418:2
chr6	101053571	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:120,4:31:124:0.032:2	./.	./.	./.	./.	./.	./.
chr6	101090562	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:33:82:0.049:2
chr6	101094554	rs239239	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,52:33:113:0.460:2	0/1:42,38:33:80:0.475:2	0/1:0,17:32:17:1.00:2	0/1:77,72:33:149:0.483:2	0/1:0,148:32:148:1.00:2	0/1:70,78:32:148:0.527:2	0/1:2,166:32:168:0.988:2	./.	0/1:0,155:33:156:1.00:2	0/1:66,62:33:128:0.484:2	0/1:1,135:33:136:0.993:2
chr6	101099480	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,5:30:169:0.030:2
chr6	101166095	rs41288423	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:30,20:32:50:0.400:2	0/1:4,8:32:12:0.667:2	./.	0/1:34,31:31:65:0.477:2	./.	0/1:37,36:31:73:0.493:2	./.	0/1:2,50:32:52:0.962:2	./.	0/1:21,13:32:34:0.382:2	./.
chr6	101296389	rs9390698	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,36:32:88:0.409:2	0/1:25,23:32:48:0.479:2	0/1:0,5:31:5:1.00:2	0/1:53,45:32:98:0.459:2	0/1:0,41:31:41:1.00:2	0/1:41,29:31:70:0.414:2	0/1:0,53:31:53:1.00:2	./.	0/1:0,107:33:107:1.00:2	0/1:48,24:32:72:0.333:2	0/1:58,48:31:106:0.453:2
chr6	102134167	rs61996330	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,37:33:78:0.474:2	./.	./.
chr6	102266322	rs34747916	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,70:29:137:0.515:2	./.	./.	0/1:43,52:30:95:0.547:2	./.	./.	./.	0/1:102,84:29:186:0.452:2
chr6	102503317	rs2227283	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,6:31:27:0.222:2	0/1:12,10:32:22:0.455:2	./.	0/1:0,37:31:37:1.00:2	0/1:13,5:30:18:0.278:2	./.	0/1:24,21:31:45:0.467:2	0/1:32,25:31:57:0.439:2	./.	0/1:19,11:32:30:0.367:2	0/1:0,40:32:40:1.00:2
chr6	102516260	rs2235076	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,15:30:22:0.682:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	105198267	rs7752614	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,85:32:86:0.988:2	0/1:49,47:32:96:0.490:2	./.	./.	./.
chr6	105300250	rs9499992	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,35:32:35:1.00:2	./.	./.	./.	./.	0/1:28,19:33:47:0.404:2	./.	0/1:28,22:31:51:0.440:2
chr6	105307435	rs2499655	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.
chr6	105614533	rs41285464	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,73:31:158:0.462:2	./.	./.	./.	./.
chr6	105726036	rs1051484	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,52:31:116:0.448:2	./.	0/1:41,50:32:91:0.549:2	./.	./.	0/1:45,53:32:98:0.541:2	./.
chr6	105730393	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:31:151:0.026:2
chr6	105770982	rs55764644	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,70:30:70:1.00:2	0/1:0,39:29:39:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	105776866	rs12192054	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,40:28:87:0.460:2	./.	./.	0/1:32,16:29:48:0.333:2	./.
chr6	105821449	rs9486069	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,81:30:81:1.00:2	./.	0/1:31,23:30:54:0.426:2	./.	./.	0/1:31,26:31:57:0.456:2	0/1:28,35:31:63:0.556:2
chr6	105824056	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:32:52:0.077:2	./.
chr6	105850712	rs880177	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,10:32:10:1.00:2	./.	0/1:6,9:32:15:0.600:2	0/1:6,7:30:13:0.538:2	0/1:11,13:35:24:0.542:2	./.	./.
chr6	106534419	rs17486714	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,57:32:124:0.460:2	./.	./.	./.	./.	./.
chr6	106536252	rs138359347	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:34:164:0.024:2	./.
chr6	106546557	rs370623395	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:69,22:24:92:0.242:2	./.	./.	0/1:78,24:25:102:0.235:2	0/1:43,14:21:57:0.246:2	0/1:63,29:24:93:0.315:2	0/1:54,20:21:74:0.270:2	0/1:80,28:20:108:0.259:2	0/1:64,20:18:84:0.238:2	0/1:69,21:22:90:0.233:2	0/1:102,31:25:133:0.233:2
chr6	106546559	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,6:25:74:0.081:2	./.	./.	./.	./.	./.
chr6	106546576	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,9:18:95:0.095:2	./.	./.	./.
chr6	106547372	rs811925	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,28:32:73:0.384:2	0/1:39,31:31:70:0.443:2	./.	./.	0/1:0,53:32:53:1.00:2	0/1:38,43:32:81:0.531:2
chr6	106553793	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:32:116:0.034:2	./.	./.	./.	./.	./.
chr6	106555025	rs1010273	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:33:6:0.667:2	./.	0/1:0,45:32:45:1.00:2	./.	./.	0/1:32,26:32:58:0.448:2	./.	./.	./.
chr6	106634466	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,4:27:35:0.114:2	./.	./.	./.	./.	./.	./.	./.
chr6	106727570	rs34601838	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,41:32:79:0.519:2	./.	./.	./.	./.	./.	./.
chr6	106967185	rs1159148	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:33:7:1.00:2	0/1:0,57:32:57:1.00:2	./.	./.	0/1:26,16:31:42:0.381:2	0/1:3,44:32:47:0.936:2	0/1:28,35:33:63:0.556:2	./.	./.
chr6	106967778	rs3747787	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:74,50:30:124:0.403:2	0/1:37,42:29:79:0.532:2	./.	./.	0/1:62,41:30:103:0.398:2	0/1:10,137:29:148:0.932:2	./.	./.	0/1:81,77:31:158:0.487:2	./.	./.
chr6	106967843	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,49:29:120:0.408:2	0/1:55,20:28:75:0.267:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	106967851	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,48:32:115:0.417:2	0/1:47,19:32:66:0.288:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	106968250	rs41302206	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:32:9:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	106987370	rs783396	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:33:48:1.00:2	0/1:2,42:33:44:0.955:2	0/1:0,6:33:6:1.00:2	0/1:0,78:33:78:1.00:2	0/1:36,31:32:67:0.463:2	0/1:0,72:32:72:1.00:2	0/1:1,48:32:49:0.980:2	0/1:0,96:33:97:1.00:2	0/1:0,89:34:89:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,99:32:99:1.00:2
chr6	106991361	rs61741114	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,57:33:134:0.425:2	0/1:5,181:33:187:0.973:2
chr6	106992464	rs1799693	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:33:37:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,36:33:36:1.00:2	0/1:10,5:33:15:0.333:2	0/1:0,25:33:25:1.00:2	0/1:0,17:34:17:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,45:34:45:1.00:2
chr6	106999822	rs2297970	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:31:3:1.00:2	0/1:1,35:30:36:0.972:2	./.	./.	0/1:26,14:31:40:0.350:2	0/1:2,31:30:33:0.939:2	0/1:37,22:31:59:0.373:2	./.	./.
chr6	107016343	rs3747789	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,39:32:82:0.476:2	./.	./.	./.	./.	./.	./.
chr6	107019880	rs9486410	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:2,43:29:45:0.956:2	0/1:0,29:29:29:1.00:2	./.	./.	0/1:40,20:29:60:0.333:2	./.	./.	./.	./.	./.	./.
chr6	107070797	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:31:88:0.045:2	./.	./.	./.	./.	./.
chr6	107070809	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:30:93:0.043:2	./.	./.	./.	./.	./.
chr6	107076783	rs1987623	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,132:32:132:1.00:2	0/1:0,63:32:63:1.00:2	./.	./.	./.	./.	0/1:147,8:32:155:0.052:2	./.	./.	0/1:1,130:33:131:0.992:2	0/1:3,138:32:141:0.979:2
chr6	107096958	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,3:31:22:0.136:2	./.	./.	./.	./.	./.	./.	./.
chr6	107100396	rs34221917	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,77:33:78:0.987:2	0/1:0,26:32:26:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	107103510	rs118029715	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,97:32:97:1.00:2
chr6	107113715	rs2015205	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,15:31:15:1.00:2	0/1:0,68:30:68:1.00:2	./.	0/1:42,33:30:75:0.440:2	0/1:2,53:31:55:0.964:2	0/1:28,29:30:57:0.509:2	0/1:32,25:32:57:0.439:2	./.	./.
chr6	107351293	rs9486499	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,20:31:56:0.357:2	./.	0/1:35,25:30:60:0.417:2	./.	./.	./.	0/1:26,17:31:43:0.395:2	./.
chr6	107365500	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:34:194:0.021:2
chr6	107390817	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,4:32:27:0.148:2	./.	./.	./.	./.	./.
chr6	107391213	rs3814072	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,66:31:120:0.550:2	./.	./.	./.	./.	./.
chr6	107391396	rs3814073	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,23:31:48:0.479:2	0/1:12,10:32:22:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,21:31:32:0.656:2
chr6	107419782	rs200273835	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,3:34:39:0.077:2	./.	./.
chr6	107420516	rs4946811	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,33:32:33:1.00:2	0/1:0,16:32:16:1.00:2	./.	0/1:28,17:32:45:0.378:2	0/1:2,27:32:29:0.931:2	./.	0/1:3,32:33:35:0.914:2	0/1:1,31:32:32:0.969:2	./.	0/1:0,33:33:33:1.00:2	0/1:27,23:32:50:0.460:2
chr6	107533365	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:34:132:0.030:2
chr6	108026402	rs1546961	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:30:52:1.00:2	0/1:2,32:30:34:0.941:2	0/1:0,2:31:2:1.00:2	0/1:0,96:30:96:1.00:2	0/1:1,55:30:56:0.982:2	0/1:0,70:30:70:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,72:30:72:1.00:2	0/1:66,50:31:116:0.431:2	0/1:0,96:29:96:1.00:2	0/1:0,118:30:118:1.00:2
chr6	108026455	rs1546960	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:30:62:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,4:29:4:1.00:2	0/1:0,113:30:113:1.00:2	0/1:1,71:30:72:0.986:2	0/1:0,75:30:75:1.00:2	0/1:0,83:31:83:1.00:2	0/1:1,109:30:110:0.991:2	0/1:68,54:31:122:0.443:2	0/1:0,101:30:101:1.00:2	0/1:0,118:30:118:1.00:2
chr6	108029109	rs3734754	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,32:30:90:0.356:2	./.	./.	0/1:41,32:30:73:0.438:2	0/1:46,69:30:115:0.600:2	./.	./.	./.
chr6	108029180	rs56215636	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,67:29:111:0.604:2	./.	./.	./.
chr6	108066307	rs376727961	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,33:32:72:0.458:2	./.	./.	./.	./.	./.	./.
chr6	108068003	rs6934505	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,49:31:100:0.490:2	./.	./.	0/1:12,44:30:56:0.786:2
chr6	108214694	rs17854547	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,22:31:58:0.379:2	./.	./.	./.	./.	0/1:37,36:32:73:0.493:2
chr6	108222589	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:32:135:0.030:2	./.	./.
chr6	108222668	rs186877229	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,6:30:146:0.041:2
chr6	108222673	rs192072257	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:32:136:0.029:2	0/1:124,6:32:130:0.046:2
chr6	108233929	rs675117	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,112:32:112:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,92:31:92:1.00:2	0/1:0,77:31:78:1.00:2	0/1:0,106:31:106:1.00:2	0/1:0,83:31:83:1.00:2	0/1:3,107:31:110:0.973:2	0/1:93,71:32:164:0.433:2	0/1:0,123:32:123:1.00:2	0/1:1,176:31:177:0.994:2
chr6	108246126	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:31:71:0.056:2	./.	./.	./.
chr6	108277287	rs9486756	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,4:31:4:1.00:2	0/1:0,3:32:3:1.00:2	./.	0/1:0,3:29:3:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,2:29:2:1.00:2	0/1:0,8:30:8:1.00:2	0/1:5,4:33:9:0.444:2	0/1:0,6:30:6:1.00:2	0/1:0,5:32:5:1.00:2
chr6	108395700	rs9480830	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,9:32:16:0.563:2	./.	./.	./.
chr6	108487936	rs17840265	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	./.	./.
chr6	108677977	rs74349975	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,20:32:31:0.645:2	./.	./.	./.	./.
chr6	108723259	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:32:90:0.044:2	./.
chr6	108768448	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,3:33:26:0.115:2	./.	./.	./.	./.	./.	./.
chr6	108882570	rs11757217	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:13,8:31:21:0.381:2	0/1:8,3:32:11:0.273:2	./.	./.	0/1:17,8:32:25:0.320:2	./.	./.	./.	./.	0/1:3,11:32:14:0.786:2	./.
chr6	108882938	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:78,5:29:83:0.060:2	./.	./.	./.	./.	./.	./.	0/1:195,4:33:199:0.020:2	./.	./.	./.
chr6	108984835	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:126,4:31:130:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr6	108985053	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,5:33:179:0.028:2	./.	./.	./.
chr6	108985092	rs200866771	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:79,5:28:84:0.060:2	0/1:66,6:31:72:0.083:2	./.	./.	./.	./.	./.	0/1:151,18:30:169:0.107:2	./.	./.	./.
chr6	108985403	rs201947198	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:105,16:32:121:0.132:2	0/1:67,8:32:75:0.107:2	./.	./.	./.	./.	./.	0/1:167,27:32:194:0.139:2	./.	./.	./.
chr6	108985481	rs199833934	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:124,28:31:152:0.184:2	0/1:70,16:32:86:0.186:2	./.	./.	./.	./.	./.	0/1:140,29:32:170:0.172:2	./.	./.	./.
chr6	109175605	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:33:69:0.058:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	109201129	rs17316116	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,12:31:33:0.364:2	./.	0/1:16,3:29:19:0.158:2	./.	./.	0/1:18,15:31:33:0.455:2	./.	./.
chr6	109274276	rs61741720	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,46:32:109:0.422:2	./.	0/1:38,36:32:74:0.486:2	./.
chr6	109322554	rs12214121	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,40:31:93:0.430:2	0/1:2,38:31:40:0.950:2	./.	./.	./.	0/1:65,38:32:103:0.369:2
chr6	109323519	rs2273668	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,31:31:78:0.397:2	0/1:3,54:32:57:0.947:2	./.	./.	./.	0/1:46,65:32:111:0.586:2
chr6	109468035	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:33:149:0.027:2	./.	./.
chr6	109480562	rs61743581	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,58:29:130:0.446:2	./.	./.	./.	0/1:110,84:30:194:0.433:2
chr6	109481896	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:30:116:0.034:2	./.	./.	./.
chr6	109481901	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:32:115:0.035:2	./.	./.	./.
chr6	109669704	rs117544795	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,17:30:26:0.654:2	./.	./.	./.	./.
chr6	109674055	rs11153174	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:17,13:33:30:0.433:2	0/1:6,7:33:13:0.538:2	./.	0/1:1,25:31:26:0.962:2	./.	./.	0/1:24,6:32:30:0.200:2	0/1:1,28:32:29:0.966:2	0/1:0,46:32:46:1.00:2	./.	./.
chr6	109762332	rs1048197	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:32:16:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	109762600	rs749621	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,23:29:70:0.333:2	./.	./.	./.	./.
chr6	109764535	rs1476387	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,38:31:76:0.500:2	0/1:18,28:31:46:0.609:2	0/1:0,8:28:8:1.00:2	0/1:0,111:30:111:1.00:2	./.	./.	0/1:0,91:30:91:1.00:2	0/1:1,109:31:110:0.991:2	0/1:1,95:31:96:0.990:2	./.	./.
chr6	109767500	rs201884508	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,16:29:41:0.390:2	./.	./.	./.	./.
chr6	109767929	rs35260632	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,58:32:107:0.542:2	0/1:39,43:32:82:0.524:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	109767930	rs9320288	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,45:32:106:0.425:2	0/1:44,36:32:80:0.450:2	0/1:1,21:31:22:0.955:2	0/1:0,122:32:122:1.00:2	./.	./.	0/1:0,151:32:153:1.00:2	0/1:1,166:32:167:0.994:2	0/1:0,107:33:107:1.00:2	./.	./.
chr6	109767931	rs59056467	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,45:32:106:0.429:2	0/1:44,36:32:80:0.450:2	0/1:14,8:31:22:0.364:2	0/1:0,122:31:122:1.00:2	./.	./.	0/1:79,79:31:158:0.500:2	0/1:3,166:31:169:0.982:2	0/1:0,107:32:107:1.00:2	./.	./.
chr6	109768295	rs910730	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:13,7:33:20:0.350:2	0/1:12,11:32:23:0.478:2	./.	0/1:0,40:32:40:1.00:2	./.	./.	0/1:1,47:32:48:0.979:2	0/1:0,55:32:55:1.00:2	0/1:0,37:33:37:1.00:2	./.	./.
chr6	109770869	rs752261	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,3:33:13:0.231:2	0/1:2,7:32:9:0.778:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	109775366	rs4946977	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,36:28:72:0.500:2	./.	./.	./.	./.
chr6	109787476	rs61731736	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,13:31:20:0.650:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	109827716	rs2277114	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,47:31:112:0.420:2	0/1:44,39:31:83:0.470:2	0/1:0,5:31:5:1.00:2	0/1:0,122:30:122:1.00:2	./.	./.	0/1:41,43:30:84:0.512:2	0/1:2,111:31:113:0.982:2	0/1:1,133:32:134:0.993:2	./.	./.
chr6	109837229	rs17070666	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,30:32:67:0.448:2	./.	./.	./.	./.
chr6	109850103	rs117403840	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.
chr6	109885475	rs10499052	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:17,18:33:35:0.514:2	0/1:8,3:32:11:0.273:2	./.	0/1:0,26:29:26:1.00:2	./.	./.	0/1:11,6:32:17:0.353:2	0/1:0,17:31:17:1.00:2	0/1:0,19:33:19:1.00:2	./.	./.
chr6	109886005	rs7757895	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,14:29:26:0.538:2	0/1:21,7:28:28:0.250:2	./.	./.	./.	0/1:30,18:29:48:0.375:2	./.	./.	./.	./.	0/1:48,25:30:73:0.342:2
chr6	109894773	rs12175588	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,30:32:61:0.492:2	0/1:16,11:31:27:0.407:2	./.	./.	./.	0/1:25,10:29:35:0.286:2	./.	./.	./.	./.	0/1:28,31:31:59:0.525:2
chr6	109900765	rs1998813	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,6:32:21:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	109931580	rs56107923	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:32:9:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	109935484	rs75714660	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,46:31:100:0.460:2	./.	./.	./.	./.
chr6	109935606	rs75733561	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,25:31:82:0.305:2	./.	./.	./.	./.
chr6	109940428	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,17:30:40:0.425:2	./.
chr6	109954252	rs1406957	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:31:56:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,82:30:82:1.00:2	./.	0/1:39,34:30:73:0.466:2	0/1:1,39:30:40:0.975:2	0/1:2,82:30:84:0.976:2	0/1:0,65:32:65:1.00:2	./.	0/1:47,39:31:86:0.453:2
chr6	109954518	rs9374111	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,21:33:33:0.636:2	0/1:11,5:33:16:0.313:2	./.	./.	./.	0/1:23,7:32:30:0.233:2	./.	./.	./.	./.	0/1:24,15:33:39:0.385:2
chr6	110012714	rs200063827	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,49:32:89:0.551:2	./.	./.
chr6	110022962	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2	./.	./.
chr6	110064928	rs2295837	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,3:32:17:0.176:2	./.	0/1:110,4:31:115:0.035:2	./.	./.	./.	./.	./.	./.
chr6	110106234	rs10499054	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,70:32:72:0.972:2	0/1:0,40:32:40:1.00:2	0/1:2,2:33:4:0.500:2	0/1:0,91:32:92:1.00:2	0/1:0,47:31:47:1.00:2	./.	0/1:18,45:32:63:0.714:2	0/1:1,93:32:94:0.989:2	0/1:0,86:33:86:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,69:32:69:1.00:2
chr6	110106925	rs201349323	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,48:31:74:0.649:2	./.	./.
chr6	110107517	rs9885672	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,24:30:69:0.348:2	0/1:18,18:31:36:0.500:2	./.	./.	./.	./.
chr6	110146303	rs1127771	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,15:33:34:0.441:2	./.	0/1:0,4:32:4:1.00:2	0/1:11,25:33:36:0.694:2	./.	0/1:24,16:32:40:0.400:2	0/1:4,9:33:13:0.692:2	0/1:0,36:33:36:1.00:2	0/1:20,10:33:31:0.333:2	./.	0/1:33,16:32:49:0.327:2
chr6	110301661	rs4354185	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,27:33:64:0.422:2	0/1:23,23:32:46:0.500:2	0/1:0,10:33:10:1.00:2	0/1:2,81:33:83:0.976:2	0/1:34,32:32:66:0.485:2	0/1:32,33:32:65:0.508:2	0/1:0,47:32:47:1.00:2	0/1:35,41:32:76:0.539:2	0/1:2,63:33:65:0.969:2	0/1:2,62:32:64:0.969:2	0/1:0,120:33:120:1.00:2
chr6	110448742	rs55817927	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,40:30:102:0.392:2	./.	./.	0/1:70,42:29:112:0.375:2	./.	0/1:67,46:30:113:0.407:2	./.
chr6	110620177	rs41288584	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,26:29:51:0.510:2	./.	./.	./.	./.
chr6	110714205	rs35697832	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:20,22:33:42:0.524:2	0/1:24,22:33:46:0.478:2	./.	0/1:45,39:32:84:0.464:2	./.	./.	./.	./.	./.	./.	./.
chr6	110746262	rs41288592	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:21,27:31:48:0.563:2	0/1:20,9:31:29:0.310:2	./.	./.	./.	./.	./.	0/1:20,28:30:48:0.583:2	./.	./.	./.
chr6	110746526	rs7756222	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,14:30:35:0.412:2	0/1:16,4:29:20:0.200:2	./.	0/1:16,24:30:40:0.600:2	0/1:16,14:31:30:0.467:2	0/1:2,39:31:41:0.951:2	0/1:32,10:31:42:0.238:2	./.	0/1:0,29:30:29:1.00:2	0/1:22,22:31:44:0.500:2	0/1:0,39:31:39:1.00:2
chr6	110746545	rs9487402	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,25:29:47:0.532:2	./.	0/1:21,21:29:42:0.500:2	./.	./.	0/1:20,13:28:33:0.394:2	./.	0/1:18,22:30:40:0.550:2
chr6	110760008	rs12210538	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:44,22:29:66:0.333:2	0/1:20,26:29:46:0.565:2	./.	0/1:37,43:30:80:0.538:2	./.	./.	0/1:0,118:30:118:1.00:2	0/1:67,62:29:129:0.481:2	0/1:42,32:30:74:0.432:2	0/1:43,37:30:80:0.463:2	0/1:39,49:29:88:0.557:2
chr6	110763875	rs723685	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:22,18:33:40:0.450:2	0/1:12,11:33:23:0.478:2	./.	./.	0/1:16,27:31:43:0.628:2	./.	./.	./.	./.	./.	./.
chr6	110763935	rs41288594	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,33:33:67:0.493:2	./.	./.
chr6	110777962	rs6907567	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:69,68:33:137:0.496:2	0/1:38,38:32:76:0.500:2	0/1:9,10:32:19:0.526:2	./.	0/1:90,90:32:180:0.500:2	./.	./.	./.	./.	./.	0/1:92,82:32:174:0.471:2
chr6	110778128	rs714368	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:17,28:30:45:0.622:2	0/1:11,16:28:27:0.593:2	./.	./.	0/1:14,16:28:30:0.533:2	./.	./.	./.	./.	./.	0/1:36,24:30:60:0.400:2
chr6	111213977	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:30:101:0.040:2	./.	./.	./.	./.
chr6	111283638	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:33:188:0.021:2	./.	./.	./.
chr6	111283674	rs371266466	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:32:175:0.023:2	./.	./.	./.
chr6	111318382	rs73763466	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,10:33:22:0.455:2	0/1:12,10:32:22:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	111320917	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,4:32:96:0.042:2	./.	./.	./.	./.	./.	./.	./.
chr6	111493953	rs33965856	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,47:31:130:0.362:2	./.	./.	./.	./.	./.	./.
chr6	111543412	rs17072442	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,14:33:37:0.378:2	./.	./.	./.
chr6	111583566	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:36:184:0.022:2	./.	./.	./.	./.	./.
chr6	111585121	rs139062302	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:106,84:32:190:0.442:2	./.	./.	./.	./.	./.	./.	./.
chr6	111587136	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,12:31:32:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	111587266	rs11153279	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,129:29:131:0.985:2	0/1:0,97:29:97:1.00:2	0/1:0,11:30:11:1.00:2	0/1:102,89:29:191:0.466:2	0/1:90,63:29:153:0.412:2	0/1:95,92:29:187:0.492:2	0/1:3,147:29:150:0.980:2	0/1:92,95:30:187:0.508:2	0/1:2,178:30:180:0.989:2	0/1:1,160:30:161:0.994:2	0/1:2,185:29:187:0.989:2
chr6	111587310	rs117505745	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,71:31:162:0.438:2
chr6	111587311	rs117701011	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,70:31:162:0.432:2
chr6	111588188	rs17072508	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,30:31:70:0.429:2	./.	./.	./.
chr6	111628597	rs3204954	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,153:30:154:0.994:2	0/1:0,76:28:76:1.00:2	./.	0/1:114,83:29:197:0.421:2	./.	0/1:93,97:29:190:0.511:2	./.	./.	0/1:0,186:30:186:1.00:2	0/1:96,95:29:191:0.497:2	./.
chr6	111628626	rs3204953	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,147:31:148:0.993:2	0/1:0,70:31:70:1.00:2	./.	0/1:103,85:30:188:0.452:2	./.	0/1:102,88:30:190:0.463:2	./.	./.	0/1:0,185:32:185:1.00:2	0/1:96,80:31:176:0.455:2	./.
chr6	111632290	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,4:33:32:0.125:2	./.	./.	./.	./.
chr6	111688745	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:33:181:0.022:2	./.	./.
chr6	111688927	rs3218587	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,116:32:119:0.975:2	./.	./.
chr6	111694124	rs3218599	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,18:32:43:0.419:2	./.	./.	./.	./.
chr6	111695073	rs455645	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:32:50:1.00:2	0/1:2,31:32:33:0.939:2	0/1:0,17:32:17:1.00:2	0/1:51,43:32:94:0.457:2	0/1:0,66:31:66:1.00:2	0/1:53,43:30:96:0.448:2	0/1:0,44:31:44:1.00:2	0/1:75,34:32:109:0.312:2	0/1:0,92:32:92:1.00:2	0/1:1,64:32:65:0.985:2	0/1:0,113:32:113:1.00:2
chr6	111695268	rs455732	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:31:11:1.00:2	./.	0/1:44,42:30:86:0.488:2	./.	0/1:1,82:31:83:0.988:2	./.	./.	0/1:49,59:31:108:0.546:2	0/1:2,148:31:150:0.987:2
chr6	111695887	rs462779	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,24:31:25:0.960:2	0/1:0,18:31:18:1.00:2	./.	0/1:14,9:30:23:0.391:2	0/1:0,27:30:27:1.00:2	0/1:11,8:31:19:0.421:2	0/1:0,15:31:15:1.00:2	0/1:17,8:31:25:0.320:2	0/1:0,24:29:24:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,36:30:36:1.00:2
chr6	111696091	rs458017	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,20:31:40:0.500:2	./.	./.	./.	./.	./.	./.
chr6	111696129	rs3218591	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,61:32:62:0.984:2	0/1:0,35:32:35:1.00:2	./.	0/1:34,25:32:59:0.424:2	./.	0/1:45,34:32:79:0.430:2	./.	0/1:45,33:32:78:0.423:2	0/1:1,86:34:87:0.989:2	0/1:30,37:32:67:0.552:2	./.
chr6	111696257	rs461646	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:33:96:1.00:2	0/1:0,42:33:42:1.00:2	0/1:1,9:32:10:0.900:2	0/1:57,33:32:90:0.367:2	0/1:1,90:32:91:0.989:2	0/1:65,51:32:116:0.440:2	0/1:0,73:33:73:1.00:2	0/1:53,62:32:115:0.539:2	0/1:0,114:33:114:1.00:2	0/1:0,76:33:76:1.00:2	0/1:1,124:33:125:0.992:2
chr6	111696852	rs458486	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	0/1:10,14:29:24:0.583:2	./.	0/1:0,18:32:18:1.00:2	./.	./.	0/1:15,13:32:28:0.464:2	0/1:0,39:33:39:1.00:2
chr6	111701327	rs375191676	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,5:32:94:0.053:2	./.
chr6	111901453	rs1043730	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:33:2:1.00:2	0/1:17,17:30:34:0.500:2	0/1:0,9:31:9:1.00:2	0/1:31,13:32:44:0.295:2	0/1:0,14:32:14:1.00:2	0/1:12,14:30:26:0.538:2	./.	0/1:11,13:31:24:0.542:2	0/1:0,24:32:24:1.00:2
chr6	111913070	rs13190932	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,36:31:80:0.450:2	./.	./.	./.
chr6	111913262	rs33980500	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,54:30:129:0.419:2	./.	./.	./.	0/1:37,50:29:87:0.575:2	./.	./.	./.
chr6	111983038	rs28763975	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,20:34:71:0.282:2	./.	./.	./.	./.	./.	./.
chr6	112382313	rs1230345	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,47:31:119:0.395:2	./.	./.	0/1:1,97:32:98:0.990:2	./.	0/1:39,47:32:86:0.547:2
chr6	112382382	rs112665393	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:31:179:0.022:2	./.	./.	./.
chr6	112390565	rs17219737	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:11,9:32:20:0.450:2	0/1:9,4:32:13:0.308:2	0/1:0,5:32:5:1.00:2	./.	./.	0/1:19,10:31:29:0.345:2	./.	./.	./.	0/1:25,4:33:29:0.138:2	./.
chr6	112397289	rs34776116	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,8:32:25:0.320:2	./.
chr6	112408610	rs6568714	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,35:30:72:0.486:2	./.	./.	0/1:0,62:31:62:1.00:2	./.	0/1:41,26:30:67:0.388:2
chr6	112420515	rs55897192	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,21:32:37:0.568:2	./.	./.	./.	./.
chr6	112435912	rs1050353	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,16:30:16:1.00:2	./.	./.	0/1:58,74:30:132:0.561:2	./.	./.	0/1:0,102:31:102:1.00:2	./.	0/1:57,59:30:116:0.509:2
chr6	112437138	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:32:41:0.098:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	112457383	rs1050349	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	./.	0/1:32,20:29:52:0.385:2	./.	./.	0/1:0,63:31:63:1.00:2	./.	0/1:32,14:31:46:0.304:2
chr6	112457390	rs2032567	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,27:33:57:0.474:2	0/1:18,13:33:31:0.419:2	0/1:0,3:32:3:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,49:32:49:1.00:2	0/1:33,18:32:51:0.353:2	0/1:0,72:33:72:1.00:2	./.	0/1:0,63:34:63:1.00:2	0/1:26,27:33:53:0.509:2	0/1:0,49:33:49:1.00:2
chr6	112480041	rs3752577	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:60,57:31:117:0.487:2	0/1:30,48:31:78:0.615:2	./.	./.	./.	./.	0/1:55,38:29:93:0.409:2	./.	./.	./.	./.
chr6	112493872	rs1050348	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,77:33:78:0.987:2	0/1:0,62:33:62:1.00:2	./.	0/1:2,146:33:148:0.986:2	0/1:0,163:32:163:1.00:2	0/1:0,131:32:131:1.00:2	0/1:83,76:33:159:0.478:2	0/1:0,135:33:135:1.00:2	0/1:1,146:33:147:0.993:2	0/1:0,119:33:119:1.00:2	0/1:0,106:33:106:1.00:2
chr6	112508769	rs9387061	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:31:63:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,83:31:83:1.00:2	0/1:0,84:31:85:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,90:31:90:1.00:2	0/1:0,104:31:104:1.00:2	0/1:0,80:33:82:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,85:30:85:1.00:2
chr6	112508770	rs9400522	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:31:63:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,83:31:83:1.00:2	0/1:0,85:30:85:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,90:30:91:1.00:2	0/1:0,104:30:104:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,73:31:73:1.00:2	0/1:0,85:30:85:1.00:2
chr6	112512862	rs180891618	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,45:31:100:0.450:2	./.	./.	./.
chr6	112512905	rs2072021	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:35,16:33:51:0.314:2	0/1:19,11:32:30:0.367:2	./.	0/1:46,30:33:76:0.395:2	./.	./.	./.	./.	./.	./.	./.
chr6	112521387	rs4947176	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:31:11:0.455:2	./.	./.	./.	0/1:39,19:34:58:0.328:2	./.	./.	./.	./.
chr6	112522852	rs11757455	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,28:32:47:0.596:2	0/1:14,3:31:17:0.176:2	./.	./.	./.	./.	./.	0/1:18,28:31:46:0.609:2
chr6	112671611	rs11153361	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:53,37:32:90:0.411:2	0/1:24,23:32:47:0.489:2	./.	./.	0/1:62,40:31:102:0.392:2	./.	./.	0/1:1,103:31:104:0.990:2	./.	./.	./.
chr6	112671639	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:30:9:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	112671813	rs12200662	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:38,35:32:73:0.479:2	0/1:28,29:32:57:0.509:2	./.	./.	0/1:30,18:31:48:0.375:2	./.	./.	0/1:2,70:32:72:0.972:2	./.	./.	./.
chr6	112671921	rs144392009	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,54:33:84:0.643:2	./.
chr6	112672155	rs11153362	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:15,18:32:33:0.545:2	0/1:11,7:32:18:0.389:2	./.	./.	0/1:23,13:30:36:0.361:2	./.	./.	0/1:1,23:31:24:0.958:2	./.	./.	./.
chr6	114378970	rs2282237	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,39:33:81:0.481:2	./.	./.	0/1:48,24:31:72:0.333:2	./.	0/1:77,40:33:117:0.342:2	./.	0/1:64,67:32:131:0.511:2
chr6	114379122	rs144094472	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,30:30:74:0.405:2	./.
chr6	114379183	rs144413801	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,30:29:80:0.375:2	./.
chr6	114379313	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,4:33:30:0.133:2	./.
chr6	116325142	rs3756772	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:31:6:1.00:2	./.	0/1:12,11:32:23:0.478:2	./.	0/1:10,8:31:18:0.444:2	0/1:0,38:32:38:1.00:2	./.	0/1:33,4:36:37:0.108:2	./.
chr6	116441470	rs2228548	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,39:33:114:0.342:2	./.	./.	./.	./.
chr6	116441646	rs2228547	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,11:31:24:0.458:2	./.	./.	0/1:23,15:29:38:0.395:2	./.	./.
chr6	116446576	rs1064583	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,154:29:154:1.00:2	0/1:0,95:30:95:1.00:2	./.	0/1:107,66:30:173:0.382:2	0/1:61,40:29:101:0.396:2	0/1:2,156:30:158:0.987:2	./.	./.	0/1:2,163:30:165:0.988:2	0/1:96,63:30:159:0.396:2	0/1:85,94:30:179:0.525:2
chr6	116446648	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,4:31:67:0.060:2	./.	./.	./.	./.	./.	./.	./.
chr6	116542386	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,7:34:99:0.071:2	./.	0/1:77,4:34:81:0.049:2	./.
chr6	116542389	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,7:31:98:0.071:2	./.	0/1:77,4:31:81:0.049:2	./.
chr6	116574002	rs2232473	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,25:30:54:0.463:2	./.	./.
chr6	116574455	rs2232472	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:32:7:0.714:2	./.	./.	./.	0/1:31,23:30:54:0.426:2	0/1:2,52:30:54:0.963:2	./.	0/1:16,11:31:27:0.407:2	./.
chr6	116575083	rs2232470	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,28:31:44:0.636:2	0/1:14,20:31:35:0.588:2	0/1:0,10:30:10:1.00:2	0/1:38,32:30:70:0.457:2	./.	0/1:52,50:30:102:0.490:2	0/1:1,79:31:80:0.988:2	0/1:0,94:30:94:1.00:2	0/1:41,42:32:83:0.506:2	0/1:27,30:31:57:0.526:2	./.
chr6	116575116	rs17524614	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:21,35:31:56:0.625:2	0/1:13,25:31:38:0.658:2	0/1:7,5:31:12:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	116600453	rs3749894	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,27:30:27:1.00:2	./.	./.	./.	./.
chr6	116600774	rs3749895	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	0/1:0,13:32:13:1.00:2	0/1:2,2:33:4:0.500:2	0/1:2,4:31:6:0.667:2	./.
chr6	116600810	rs3828743	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	0/1:0,12:30:12:1.00:2	./.	./.	./.
chr6	116720487	rs10485183	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:29,26:31:55:0.473:2	0/1:18,19:32:37:0.514:2	./.	./.	0/1:29,24:31:53:0.453:2	0/1:34,23:31:57:0.404:2	./.	./.	./.	0/1:0,51:31:51:1.00:2	./.
chr6	116720514	rs35548455	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,15:31:46:0.326:2	./.
chr6	116752290	rs34994230	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,77:30:171:0.450:2	./.	./.	./.	./.
chr6	116757243	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:32:78:0.051:2	./.	./.	./.
chr6	116757271	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:31:53:0.075:2	./.	./.	./.
chr6	116757479	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:32:140:0.029:2	./.	./.	./.	./.
chr6	116757557	rs560644	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,91:29:92:0.989:2	0/1:0,45:29:45:1.00:2	0/1:0,25:29:25:1.00:2	0/1:55,50:28:105:0.476:2	0/1:64,47:28:111:0.423:2	0/1:0,92:29:92:1.00:2	0/1:1,163:29:164:0.994:2	0/1:1,129:29:130:0.992:2	0/1:0,83:30:83:1.00:2	0/1:0,79:29:79:1.00:2	0/1:1,108:29:109:0.991:2
chr6	116757778	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:73,4:31:77:0.052:2	./.	./.	./.	./.	./.	0/1:186,4:33:190:0.021:2	0/1:157,5:31:162:0.031:2	./.	./.	./.
chr6	116783330	rs1057192	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:31:7:0.857:2	0/1:2,4:33:6:0.667:2	0/1:1,4:32:5:0.800:2	0/1:0,2:31:2:1.00:2	./.	0/1:0,5:34:5:1.00:2	./.	./.
chr6	116783585	rs76716752	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,5:32:13:0.385:2	./.	./.	./.
chr6	116784797	rs11544160	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,71:30:188:0.378:2	./.	./.	./.	./.	./.
chr6	116784850	rs41289932	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,67:32:152:0.441:2	./.	./.	./.	0/1:87,49:32:136:0.360:2	./.	./.	./.
chr6	116818225	rs114678052	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,16:32:41:0.390:2	./.	./.	./.
chr6	116875357	rs113076582	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,55:31:135:0.407:2	./.	./.	./.	./.	./.	./.	./.
chr6	116875427	rs7762318	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,32:33:73:0.438:2	0/1:22,9:33:31:0.290:2	0/1:0,7:31:7:1.00:2	0/1:45,28:32:73:0.384:2	./.	0/1:47,36:31:83:0.434:2	0/1:39,36:32:75:0.480:2	0/1:53,41:32:94:0.436:2	0/1:1,83:32:84:0.988:2	0/1:0,52:32:52:1.00:2	0/1:1,74:32:75:0.987:2
chr6	116875493	rs9387420	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,8:29:21:0.381:2	0/1:5,5:24:10:0.500:2	./.	0/1:13,7:33:20:0.350:2	0/1:9,4:26:13:0.308:2	0/1:6,9:29:15:0.600:2
chr6	116875504	rs12660180	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:31:11:0.273:2	./.	./.	./.	0/1:10,10:32:20:0.500:2	./.	./.	./.
chr6	116892734	rs62622856	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,12:31:21:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	116938232	rs13213314	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,79:33:125:0.632:2	0/1:4,120:32:124:0.968:2	./.	0/1:72,67:33:139:0.482:2	./.	./.	./.	./.
chr6	116949218	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:31:35:0.114:2	./.	./.	./.
chr6	116950734	rs6927567	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,10:31:24:0.417:2	./.	./.	0/1:10,9:33:19:0.474:2	0/1:11,8:32:19:0.421:2	0/1:21,8:32:29:0.276:2
chr6	116950833	rs784133	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,18:33:46:0.391:2	0/1:12,8:33:20:0.400:2	./.	0/1:0,39:32:39:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,38:32:38:1.00:2	0/1:19,18:33:37:0.486:2	0/1:0,32:31:32:1.00:2	0/1:31,23:33:54:0.426:2	0/1:13,20:33:33:0.606:2	0/1:34,15:32:49:0.306:2
chr6	116953443	rs146142715	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,35:31:59:0.593:2
chr6	116973182	rs4946188	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,23:31:45:0.511:2	0/1:12,14:30:26:0.538:2	./.	./.	./.	0/1:27,19:29:46:0.413:2	./.	./.	0/1:28,34:31:62:0.548:2	0/1:33,25:30:58:0.431:2	0/1:35,29:31:64:0.453:2
chr6	116987887	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:136,4:31:141:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr6	117019868	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,5:33:56:0.089:2	./.	./.
chr6	117045491	rs2243368	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,82:33:186:0.441:2	0/1:67,47:32:114:0.412:2	./.	0/1:76,49:33:125:0.392:2	./.	0/1:111,76:34:187:0.406:2	./.	./.
chr6	117083172	rs41306045	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,63:31:135:0.467:2	./.	./.	./.	./.	./.	0/1:101,64:31:165:0.388:2
chr6	117086378	rs654128	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	0/1:18,32:32:50:0.640:2	./.	./.
chr6	117113315	rs41290852	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,5:30:15:0.333:2	./.	./.	./.	./.	0/1:75,61:31:136:0.449:2	./.	./.	./.
chr6	117113653	rs615199	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:57,42:31:99:0.424:2	0/1:20,26:29:46:0.565:2	./.	./.	./.	./.	0/1:47,36:29:83:0.434:2	0/1:89,65:30:154:0.422:2	./.	./.	./.
chr6	117114025	rs6901250	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:26,16:33:42:0.381:2	0/1:14,17:32:31:0.548:2	./.	./.	./.	./.	0/1:14,15:32:29:0.517:2	0/1:25,15:31:40:0.375:2	./.	./.	./.
chr6	117114223	rs6924002	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:33,35:32:68:0.515:2	0/1:24,19:32:43:0.442:2	0/1:2,6:31:8:0.750:2	./.	./.	./.	0/1:19,27:32:46:0.587:2	0/1:30,28:32:58:0.483:2	./.	./.	./.
chr6	117114290	rs35937022	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,27:32:64:0.422:2	./.	./.	./.	0/1:0,46:31:46:1.00:2	0/1:47,45:32:92:0.489:2
chr6	117114403	rs6901971	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,15:30:38:0.395:2	0/1:11,11:32:22:0.500:2	0/1:0,2:30:2:1.00:2	0/1:28,15:30:43:0.349:2	./.	0/1:16,15:29:31:0.484:2	0/1:17,11:31:28:0.393:2	0/1:0,34:32:34:1.00:2	0/1:12,17:31:29:0.586:2	0/1:0,24:32:24:1.00:2	0/1:22,21:32:43:0.488:2
chr6	117116885	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:33:129:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	117121894	rs6917467	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:32:58:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,82:31:82:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,87:31:87:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,99:31:99:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,95:32:95:1.00:2
chr6	117128159	rs61745784	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,60:31:142:0.423:2	./.	./.	./.
chr6	117130544	rs28360548	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,28:33:64:0.438:2	./.	0/1:47,36:32:83:0.434:2	./.	./.	./.	0/1:0,63:33:63:1.00:2	0/1:50,25:33:75:0.333:2
chr6	117130704	rs2274911	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,36:32:74:0.486:2	0/1:39,37:32:76:0.487:2	0/1:0,22:31:22:1.00:2	0/1:60,69:31:129:0.535:2	./.	0/1:90,47:30:139:0.343:2	0/1:81,48:31:129:0.372:2	0/1:0,107:32:107:1.00:2	0/1:77,47:33:124:0.379:2	0/1:3,86:32:89:0.966:2	0/1:87,44:32:131:0.336:2
chr6	117150008	rs6907580	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	0/1:42,24:31:66:0.364:2	./.	./.	./.
chr6	117150057	rs41291914	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,38:32:68:0.559:2	./.	./.	./.	./.
chr6	117243260	rs7764347	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,3:31:13:0.231:2	0/1:9,3:29:12:0.250:2	./.	./.	./.	./.	./.	./.	0/1:11,7:28:18:0.389:2	./.	0/1:12,13:28:25:0.520:2
chr6	117244374	rs7770158	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:59,41:29:100:0.410:2	0/1:41,40:29:81:0.494:2	./.	./.	0/1:34,27:29:61:0.443:2	./.	./.	./.	0/1:86,81:31:167:0.485:2	./.	0/1:72,81:30:153:0.529:2
chr6	117245887	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:28:64:0.063:2	./.	./.	./.	./.
chr6	117246719	rs4946206	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:35,33:32:68:0.485:2	0/1:15,21:32:36:0.583:2	./.	./.	0/1:46,32:31:78:0.410:2	./.	./.	./.	0/1:39,42:32:81:0.519:2	./.	0/1:41,32:32:73:0.438:2
chr6	117248218	rs611349	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:30,34:33:64:0.531:2	0/1:19,9:33:29:0.321:2	./.	./.	0/1:45,34:32:79:0.430:2	./.	./.	./.	0/1:48,41:33:89:0.461:2	./.	0/1:37,39:32:76:0.513:2
chr6	117249966	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,4:35:104:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr6	117591755	rs13194610	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	0/1:16,11:29:27:0.407:2	./.	./.	./.	./.
chr6	117622184	rs619203	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	0/1:20,15:31:35:0.429:2	./.	0/1:10,14:32:24:0.583:2	./.	./.	./.	0/1:42,17:33:59:0.288:2
chr6	117622188	rs529156	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	0/1:19,10:33:29:0.345:2	./.	0/1:11,12:34:23:0.522:2	./.	./.	./.	0/1:41,15:34:56:0.268:2
chr6	117622233	rs529038	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,3:31:15:0.200:2	./.	./.	./.	./.	./.	0/1:29,12:32:41:0.293:2
chr6	117631431	rs552183	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,20:30:34:0.588:2	./.
chr6	117639419	rs497186	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,28:32:48:0.583:2	./.
chr6	117649988	rs581235	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,37:32:106:0.349:2	./.
chr6	117658355	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:33:83:0.048:2	./.
chr6	117677848	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:32:134:0.030:2	./.
chr6	117683821	rs2229079	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,21:30:51:0.412:2	./.	./.	./.	./.	./.	0/1:55,36:32:91:0.396:2
chr6	117686840	rs2229078	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,21:32:36:0.600:2	./.
chr6	117708971	rs9489143	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,18:29:42:0.429:2	./.	./.	./.	0/1:36,24:31:60:0.400:2	0/1:20,13:30:33:0.394:2	./.
chr6	117708999	rs34203286	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,42:31:101:0.416:2	./.	./.	./.	./.	./.	./.	./.
chr6	117724379	rs2243380	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,34:32:63:0.540:2	./.	./.
chr6	117725448	rs1998206	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,31:31:63:0.492:2	./.	./.	./.	./.	./.	0/1:47,37:31:84:0.440:2
chr6	117725578	rs2243378	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,22:31:43:0.512:2	0/1:17,19:32:37:0.528:2	./.	0/1:44,24:30:68:0.353:2	0/1:28,24:29:52:0.462:2	0/1:47,30:31:77:0.390:2	./.	./.	0/1:42,26:32:68:0.382:2	0/1:35,19:31:54:0.352:2	0/1:0,52:30:52:1.00:2
chr6	117730819	rs2273601	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:31,28:32:59:0.475:2	0/1:26,19:32:45:0.422:2	./.	0/1:57,44:32:101:0.436:2	./.	0/1:75,45:32:120:0.375:2	./.	./.	./.	0/1:32,33:33:65:0.508:2	0/1:35,46:33:81:0.568:2
chr6	117842669	rs72963484	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,14:31:30:0.467:2	./.	0/1:14,6:31:20:0.300:2	./.	./.	./.	0/1:29,25:31:54:0.463:2
chr6	117869286	rs11153674	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,6:32:12:0.500:2	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	0/1:4,3:30:7:0.429:2
chr6	117869424	rs929059	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,17:29:35:0.486:2	./.	0/1:10,6:30:16:0.375:2	./.	./.	./.	0/1:13,8:30:21:0.381:2
chr6	117869491	rs210621	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,18:27:18:1.00:2	0/1:0,11:31:11:1.00:2	./.	0/1:0,33:29:33:1.00:2	0/1:1,27:30:28:0.964:2	0/1:0,45:30:45:1.00:2	0/1:19,26:31:45:0.578:2	0/1:12,22:31:34:0.647:2	0/1:24,13:31:37:0.351:2	0/1:0,33:28:33:1.00:2	0/1:0,31:29:31:1.00:2
chr6	117996865	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,3:31:14:0.214:2	./.	./.	./.	./.	./.	./.	./.
chr6	118014285	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:195,5:30:200:0.025:2	./.	./.	0/1:191,6:28:197:0.030:2	./.	./.	0/1:193,4:34:197:0.020:2
chr6	118015332	rs76776814	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:34,3:32:37:0.081:2	./.	0/1:71,4:35:75:0.053:2	0/1:51,6:34:57:0.105:2	./.	0/1:50,12:35:62:0.194:2	0/1:68,11:33:79:0.139:2	./.	0/1:52,7:32:59:0.119:2	./.
chr6	118024808	rs142549647	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:32:107:0.037:2	./.	./.	./.
chr6	118024842	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:31:137:0.029:2	./.	./.	./.
chr6	118791804	rs7743702	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,29:32:52:0.558:2	./.	./.	./.
chr6	118803091	rs9489410	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,5:32:15:0.333:2	./.	./.	./.
chr6	118880640	rs12198461	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,64:33:66:0.970:2	0/1:1,36:32:37:0.973:2	0/1:4,6:32:10:0.600:2	0/1:48,27:33:75:0.360:2	0/1:0,44:31:46:1.00:2	0/1:3,75:32:78:0.962:2	0/1:21,31:32:52:0.596:2	./.	0/1:0,79:33:79:1.00:2	./.	0/1:0,83:32:83:1.00:2
chr6	118881660	rs111416751	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,34:31:76:0.447:2	./.	./.	./.
chr6	118881822	rs1051429	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:31:22:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,2:30:2:1.00:2	0/1:13,13:30:26:0.500:2	0/1:0,14:29:14:1.00:2	0/1:0,19:30:19:1.00:2	./.	./.	0/1:0,20:32:20:1.00:2	0/1:13,13:31:26:0.500:2	0/1:0,30:31:30:1.00:2
chr6	118886961	rs3734382	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:32:54:1.00:2	0/1:1,29:32:30:0.967:2	0/1:0,7:31:7:1.00:2	0/1:35,34:31:69:0.493:2	0/1:1,39:31:40:0.975:2	0/1:0,39:31:39:1.00:2	0/1:20,21:32:41:0.512:2	0/1:31,28:31:59:0.475:2	0/1:0,58:32:58:1.00:2	0/1:25,24:32:49:0.490:2	0/1:0,80:32:80:1.00:2
chr6	118887303	rs3734381	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,112:30:114:0.982:2	0/1:0,71:29:71:1.00:2	0/1:5,9:30:14:0.643:2	0/1:101,88:30:189:0.466:2	0/1:2,130:30:133:0.985:2	0/1:4,156:30:160:0.975:2	0/1:83,75:30:158:0.475:2	./.	0/1:1,176:31:177:0.994:2	./.	0/1:5,170:30:175:0.971:2
chr6	118953755	rs9320659	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,25:27:59:0.424:2	./.	./.	./.
chr6	118973953	rs9489486	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:33:61:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,9:32:9:1.00:2	0/1:29,12:32:41:0.293:2	0/1:0,23:32:23:1.00:2	0/1:29,23:33:52:0.442:2	0/1:17,19:32:36:0.528:2	0/1:24,31:33:55:0.564:2	0/1:0,49:33:49:1.00:2	0/1:40,29:33:69:0.420:2	0/1:0,67:33:67:1.00:2
chr6	119136759	rs65685	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,57:32:57:1.00:2	./.	./.	./.	./.	./.
chr6	119137147	rs79670608	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,84:31:172:0.488:2
chr6	119149149	rs284921	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,125:31:125:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,129:33:129:1.00:2	0/1:0,122:32:122:1.00:2	./.	0/1:1,121:32:122:0.992:2	0/1:0,155:32:155:1.00:2	0/1:0,145:33:145:1.00:2	0/1:0,121:32:121:1.00:2	0/1:0,139:32:139:1.00:2
chr6	119226850	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:34:131:0.031:2
chr6	119238904	rs41292552	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,40:32:81:0.494:2	./.	./.
chr6	119245024	rs12197931	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,42:31:87:0.483:2	./.	./.	./.	./.	./.	./.	./.
chr6	119252740	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:33:142:0.028:2	./.	./.	./.	./.
chr6	119327632	rs17827619	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,33:31:33:1.00:2	./.	./.	./.	./.	./.
chr6	119345894	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:34:89:0.045:2	./.	./.
chr6	119510941	rs2072890	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:32:82:1.00:2	0/1:0,47:32:47:1.00:2	0/1:6,4:32:10:0.400:2	0/1:2,98:32:100:0.980:2	0/1:0,80:32:80:1.00:2	0/1:0,99:31:99:1.00:2	0/1:46,45:31:91:0.495:2	0/1:72,34:32:106:0.321:2	0/1:1,93:33:94:0.989:2	./.	./.
chr6	119669827	rs370273743	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,35:30:70:0.500:2	0/1:19,13:31:32:0.406:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	121401996	rs56300302	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,48:32:105:0.457:2	./.	./.	./.	./.	./.	./.
chr6	121427283	rs56356586	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,56:32:128:0.438:2	./.	./.	./.
chr6	121452897	rs150710532	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,3:28:11:0.273:2	./.	./.	./.	./.	./.	./.
chr6	121491622	rs55813785	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,7:31:22:0.318:2	./.	./.	./.	./.	./.	./.
chr6	121526294	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:31:76:0.053:2	./.
chr6	121577370	rs7745023	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,18:32:30:0.600:2	0/1:13,6:31:19:0.316:2	0/1:1,2:31:3:0.667:2	0/1:16,18:33:34:0.529:2	0/1:27,18:33:45:0.400:2	0/1:0,29:32:29:1.00:2	0/1:12,12:33:24:0.500:2	0/1:0,37:32:37:1.00:2	0/1:11,26:33:37:0.703:2	0/1:8,19:33:27:0.704:2	0/1:31,25:33:56:0.446:2
chr6	121620608	rs9387944	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:33:85:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,66:32:66:1.00:2	0/1:1,50:32:51:0.980:2	0/1:0,65:32:65:1.00:2	0/1:0,68:33:68:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,121:33:121:1.00:2
chr6	121625732	rs185568348	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,7:30:35:0.200:2	./.	./.	./.	./.
chr6	121629167	rs9398629	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,49:32:130:0.377:2	0/1:36,26:32:62:0.419:2	0/1:13,12:32:25:0.480:2	0/1:68,38:32:106:0.358:2	./.	./.	./.	./.	0/1:89,50:33:139:0.360:2	0/1:36,51:32:87:0.586:2	0/1:67,77:33:144:0.535:2
chr6	121632008	rs9372653	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,18:33:18:1.00:2	0/1:0,17:31:17:1.00:2	./.	0/1:0,14:29:14:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,36:31:36:1.00:2
chr6	121642851	rs7767455	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,69:33:150:0.460:2	./.	./.	./.	./.	./.	./.
chr6	121768710	rs57946868	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,28:32:43:0.651:2	./.	./.	./.	./.
chr6	121769050	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,12:31:71:0.169:2	./.	./.	./.	./.	./.
chr6	121769315	rs72548744	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,11:32:20:0.550:2	./.	./.	./.	./.
chr6	121769805	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,4:32:99:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr6	121770464	rs12212865	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,37:32:87:0.430:2	./.	0/1:22,38:31:60:0.633:2	./.	./.	0/1:45,33:33:78:0.423:2	0/1:43,37:32:80:0.463:2	./.
chr6	121770605	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,3:33:42:0.071:2	./.	./.	./.	./.
chr6	121770657	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.	./.	./.	./.
chr6	121770660	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.
chr6	121770806	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:32:185:0.022:2	./.	./.	./.	./.
chr6	122768029	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,5:28:188:0.027:2	./.	./.	./.	./.
chr6	123022625	rs143459711	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,53:28:103:0.515:2	./.	./.	./.	./.
chr6	123122464	rs28385609	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:48,40:32:88:0.455:2	0/1:22,13:32:35:0.371:2	./.	./.	./.	./.	./.	0/1:51,24:31:75:0.320:2	./.	./.	./.
chr6	123130436	rs41292584	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:31:12:0.500:2	./.	0/1:15,22:31:37:0.595:2	./.	./.	./.	./.	./.	./.
chr6	123130452	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,20:30:30:0.667:2	./.	./.	./.	./.
chr6	123318478	rs41284424	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,23:30:45:0.511:2	./.	./.	./.	./.
chr6	123581789	rs11373802	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:18,8:18:26:0.308:2	./.	./.	./.	./.	./.	./.	0/1:33,9:18:42:0.214:2	0/1:19,10:17:29:0.345:2	./.	0/1:41,11:14:52:0.212:2
chr6	123658825	rs9401658	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,3:30:11:0.273:2	./.	./.	./.
chr6	123687288	rs2873479	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:33:81:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,7:33:7:1.00:2	0/1:39,40:32:79:0.506:2	0/1:0,38:32:38:1.00:2	0/1:0,52:32:52:1.00:2	0/1:32,28:32:60:0.467:2	0/1:0,50:32:50:1.00:2	0/1:0,117:33:117:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,99:33:99:1.00:2
chr6	123696766	rs17737379	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,17:31:51:0.333:2	0/1:15,7:32:22:0.318:2	./.	./.	0/1:41,27:32:68:0.397:2	./.
chr6	123699019	rs28494009	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,4:29:4:1.00:2	0/1:4,4:29:8:0.500:2	./.	./.	./.	./.	./.
chr6	123699042	rs6901953	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:1,2:34:3:0.667:2	0/1:0,6:34:6:1.00:2	./.	./.	./.	./.	./.	0/1:2,4:35:6:0.667:2	0/1:2,6:33:8:0.750:2	0/1:3,3:34:6:0.500:2	0/1:0,2:37:2:1.00:2
chr6	123702499	rs3813328	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,4:30:4:1.00:2	0/1:6,4:31:10:0.400:2	./.	0/1:4,4:29:8:0.500:2	./.	./.	0/1:6,3:30:9:0.333:2
chr6	123833457	rs6902416	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,19:33:40:0.475:2	0/1:9,9:33:18:0.500:2	./.	0/1:22,10:33:32:0.313:2	0/1:0,9:33:9:1.00:2	0/1:15,13:31:28:0.464:2	0/1:0,3:33:3:1.00:2	0/1:0,19:33:19:1.00:2	0/1:0,26:33:26:1.00:2	0/1:15,21:33:36:0.583:2	0/1:2,41:32:43:0.953:2
chr6	123837286	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,14:30:36:0.389:2	./.	./.	./.	./.	./.	./.	./.
chr6	123869607	rs9490809	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:32:5:1.00:2	0/1:39,29:32:68:0.426:2	0/1:1,46:32:47:0.979:2	./.	0/1:29,22:32:51:0.431:2	./.	0/1:0,65:33:65:1.00:2	0/1:24,33:31:57:0.579:2	0/1:57,34:32:91:0.374:2
chr6	123957893	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:32:154:0.026:2	./.	./.	./.
chr6	124125367	rs78426148	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:125,19:16:144:0.132:2	0/1:113,13:15:127:0.103:2	./.	0/1:113,14:17:128:0.110:2	./.	0/1:118,21:20:139:0.151:2	0/1:124,15:16:140:0.108:2
chr6	124979441	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:33:108:0.037:2	./.	./.	./.
chr6	125144352	rs2025251	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:33:44:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,4:33:4:1.00:2	0/1:2,56:32:58:0.966:2	0/1:31,20:31:51:0.392:2	./.	0/1:0,58:33:58:1.00:2	./.	0/1:0,59:32:59:1.00:2	0/1:27,23:33:50:0.460:2	0/1:38,24:33:62:0.387:2
chr6	125369362	rs72969686	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,18:29:42:0.429:2	./.	./.	./.	./.	./.	./.
chr6	125475139	rs2277111	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	0/1:18,22:31:40:0.550:2	0/1:0,37:31:37:1.00:2	./.	./.	./.	0/1:0,41:32:41:1.00:2	0/1:14,16:30:30:0.533:2
chr6	125541286	rs150625143	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,39:32:80:0.488:2	./.	./.	./.	./.	./.	./.	./.
chr6	126075632	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,4:32:80:0.050:2	./.	./.	./.	./.	./.	./.	./.
chr6	126075698	rs1935978	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,32:31:55:0.582:2	./.	./.	./.	./.	./.	./.	./.
chr6	126080522	rs61737181	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,14:33:32:0.438:2	./.	./.
chr6	126210395	rs6919947	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,6:29:11:0.545:2	0/1:10,3:34:13:0.231:2	./.	0/1:0,14:32:14:1.00:2	0/1:5,5:33:10:0.500:2	0/1:5,5:32:10:0.500:2	0/1:3,4:33:7:0.571:2	./.	0/1:2,14:34:16:0.875:2	./.	0/1:0,17:30:17:1.00:2
chr6	126249914	rs1567	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,15:30:26:0.577:2	./.	./.	0/1:0,37:33:38:1.00:2	./.	./.
chr6	126278230	rs2295005	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,19:34:39:0.487:2	0/1:8,11:33:19:0.579:2	./.	0/1:0,76:32:76:1.00:2	0/1:0,72:33:72:1.00:2	0/1:36,42:33:78:0.538:2	0/1:51,40:34:91:0.440:2	0/1:0,78:33:78:1.00:2	0/1:30,44:32:75:0.595:2	0/1:32,25:32:57:0.439:2	0/1:0,43:31:43:1.00:2
chr6	126296100	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,55:32:133:0.414:2	0/1:37,31:32:68:0.456:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	126320653	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,6:33:194:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr6	126320660	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,6:34:198:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr6	126661502	rs41285260	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,37:29:69:0.536:2	0/1:35,18:30:53:0.340:2	./.	./.	./.	./.	./.	0/1:52,33:30:85:0.388:2
chr6	127476516	rs1892172	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,47:31:97:0.485:2	0/1:32,54:31:86:0.628:2	0/1:8,11:30:19:0.579:2	0/1:103,61:30:164:0.372:2	0/1:1,132:30:133:0.992:2	0/1:71,78:30:149:0.523:2	./.	0/1:81,62:30:143:0.434:2	./.	./.	./.
chr6	127608795	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:32:75:0.053:2	./.
chr6	127609558	rs41285264	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,23:31:49:0.469:2	./.	./.	./.
chr6	127609691	rs9321073	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,11:31:18:0.611:2	0/1:5,5:31:10:0.500:2	./.	0/1:0,30:30:30:1.00:2	0/1:0,15:29:15:1.00:2	./.	0/1:0,16:28:16:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,37:31:37:1.00:2
chr6	127652155	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,18:31:29:0.621:2	0/1:10,7:32:17:0.412:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	127767954	rs139745911	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:101,84:31:185:0.454:2	./.	./.	./.	./.	./.	./.
chr6	127768472	rs2236026	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,35:31:71:0.493:2	./.	./.	./.	./.	0/1:54,56:31:110:0.509:2	./.
chr6	127768741	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:33:40:0.100:2	./.	./.
chr6	127768762	rs6902288	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,15:31:35:0.429:2	0/1:19,7:31:26:0.269:2	./.	0/1:1,29:30:30:0.967:2	0/1:20,16:30:36:0.444:2	./.	0/1:0,23:30:23:1.00:2	0/1:17,18:29:35:0.514:2	0/1:0,23:30:23:1.00:2	0/1:25,20:31:45:0.444:2	0/1:1,35:30:36:0.972:2
chr6	127771370	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:29:106:0.038:2	./.	./.	./.
chr6	127771452	rs3734447	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,14:31:36:0.389:2	0/1:15,9:30:24:0.375:2	0/1:1,2:31:3:0.667:2	0/1:0,16:32:16:1.00:2	0/1:13,15:30:28:0.536:2	./.	0/1:1,21:32:22:0.955:2	0/1:8,15:30:23:0.652:2	0/1:0,21:32:21:1.00:2	0/1:14,15:30:29:0.517:2	0/1:1,47:31:48:0.979:2
chr6	127796643	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,6:30:73:0.082:2	./.	./.
chr6	127797179	rs3734448	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,25:32:61:0.410:2	0/1:20,27:31:47:0.574:2	./.	./.	0/1:15,25:31:40:0.625:2	./.	0/1:13,16:31:29:0.552:2	./.
chr6	127797374	rs3734450	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,18:30:44:0.409:2	0/1:37,38:30:75:0.507:2	./.	./.	0/1:31,34:30:66:0.523:2	./.	0/1:29,19:30:48:0.396:2	./.
chr6	127837039	rs146616372	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,19:29:39:0.487:2	./.
chr6	127899889	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:33:123:0.033:2	./.	./.
chr6	127901450	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:32:195:0.021:2	./.	./.	./.
chr6	128040839	rs675531	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,17:32:17:1.00:2	0/1:0,135:32:135:1.00:2	0/1:78,47:32:125:0.376:2	0/1:66,67:32:133:0.504:2	0/1:62,56:33:118:0.475:2	0/1:60,63:33:123:0.512:2	0/1:83,69:33:152:0.454:2	0/1:64,68:32:132:0.515:2	0/1:1,130:32:131:0.992:2
chr6	128134685	rs10872326	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,19:30:65:0.292:2	0/1:28,27:31:55:0.491:2	./.	0/1:29,31:29:60:0.517:2
chr6	128298137	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,39:31:118:0.331:2	./.	./.	./.	./.	./.	./.
chr6	128319909	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,6:32:140:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr6	128327194	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:33:116:0.034:2	./.	./.	./.	./.
chr6	128388799	rs35030557	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,34:27:34:1.00:2	0/1:0,25:29:25:1.00:2	./.	0/1:2,54:27:56:0.964:2	./.	./.	0/1:1,42:25:43:0.977:2	./.	./.	0/1:25,18:26:43:0.419:2	0/1:35,16:26:52:0.314:2
chr6	128400029	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:32:164:0.024:2	./.	./.
chr6	128403671	rs183464331	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,56:29:151:0.371:2	./.	./.	./.
chr6	128403745	rs17828130	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:32:73:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,7:31:7:1.00:2	0/1:2,101:32:103:0.981:2	0/1:33,27:31:60:0.450:2	0/1:0,88:32:88:1.00:2	0/1:4,62:33:66:0.939:2	0/1:78,69:33:147:0.469:2	0/1:54,33:33:87:0.379:2	0/1:0,73:33:73:1.00:2	0/1:51,52:32:103:0.505:2
chr6	128643274	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:106,4:33:110:0.036:2	./.	./.	./.	./.	./.	./.	./.
chr6	129371106	rs1140366	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,82:30:175:0.469:2	./.	0/1:81,101:31:182:0.555:2	./.	./.	./.
chr6	129381026	rs4404787	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,179:31:179:1.00:2	0/1:0,83:31:83:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,170:32:170:1.00:2	0/1:0,132:31:132:1.00:2	0/1:0,178:31:178:1.00:2	0/1:1,177:32:178:0.994:2	0/1:0,175:31:176:1.00:2	0/1:1,174:32:175:0.994:2	0/1:1,177:32:178:0.994:2	0/1:113,68:32:181:0.376:2
chr6	129468137	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:35:134:0.030:2	./.	./.
chr6	129511373	rs2306220	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,24:34:48:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr6	129513895	rs61620549	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,53:31:110:0.482:2	./.	./.	./.	./.	./.	./.	./.
chr6	129581944	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:34:106:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	129612808	rs1027199	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:32:15:0.600:2	./.	0/1:0,83:32:84:1.00:2	./.	./.	0/1:53,47:33:100:0.470:2	./.	./.	0/1:37,42:33:79:0.532:2
chr6	129687396	rs117781224	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,50:33:119:0.420:2	./.	./.	./.	./.
chr6	129691132	rs17057184	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,5:28:11:0.455:2	./.	./.	./.	./.	./.	./.
chr6	129722389	rs3749877	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,24:33:43:0.558:2	0/1:0,21:32:21:1.00:2	0/1:1,21:32:22:0.955:2	./.	0/1:39,17:34:56:0.304:2	0/1:12,7:34:19:0.368:2	./.	./.
chr6	129722425	rs3749878	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:24:4:1.00:2	0/1:18,22:33:40:0.550:2	0/1:0,26:32:26:1.00:2	0/1:0,32:32:32:1.00:2	./.	0/1:39,27:32:66:0.409:2	0/1:13,7:33:20:0.350:2	./.	./.
chr6	129762112	rs2297738	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:31:12:0.583:2	./.	./.	./.	0/1:54,35:32:89:0.393:2	./.	./.	0/1:40,44:31:84:0.524:2	0/1:79,54:32:133:0.406:2
chr6	129807629	rs2229848	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:0,36:31:36:1.00:2	0/1:10,5:31:15:0.333:2	0/1:41,40:31:81:0.494:2	0/1:1,35:29:36:0.972:2	0/1:0,73:30:73:1.00:2	./.	0/1:0,99:30:99:1.00:2	0/1:0,87:31:87:1.00:2	0/1:43,36:31:79:0.456:2	0/1:0,89:31:89:1.00:2
chr6	129807699	rs2229849	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,85:32:86:0.988:2	0/1:0,49:32:49:1.00:2	0/1:13,12:33:25:0.480:2	0/1:60,68:33:128:0.531:2	0/1:1,115:32:116:0.991:2	0/1:0,124:32:124:1.00:2	./.	0/1:0,134:32:134:1.00:2	0/1:0,150:33:150:1.00:2	0/1:56,86:33:142:0.606:2	0/1:0,147:32:147:1.00:2
chr6	129807714	rs2229850	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,17:32:32:0.531:2	0/1:69,52:32:121:0.430:2	0/1:123,4:31:130:0.031:2	./.	0/1:0,107:32:107:1.00:2	./.	./.	0/1:80,45:32:125:0.360:2	./.
chr6	129813053	rs2244008	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,7:33:14:0.500:2	./.	./.	./.	./.
chr6	129905140	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:31:163:0.025:2	./.	./.	./.	./.	./.
chr6	129905249	rs12197456	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,36:32:75:0.480:2	./.	./.	./.	./.
chr6	129927014	rs3813366	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,16:27:46:0.348:2	0/1:23,11:30:34:0.324:2	0/1:6,4:31:10:0.400:2	0/1:0,43:30:43:1.00:2	./.	0/1:2,64:30:66:0.970:2	0/1:25,24:29:49:0.490:2	0/1:34,27:27:61:0.443:2	./.	0/1:34,23:28:57:0.404:2	0/1:61,58:29:119:0.487:2
chr6	129955171	rs13218300	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,6:32:12:0.500:2	0/1:3,5:33:9:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,14:31:23:0.609:2
chr6	130031215	rs3752536	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,41:32:87:0.471:2	0/1:19,16:31:35:0.457:2	0/1:6,5:32:11:0.455:2	0/1:1,92:32:93:0.989:2	0/1:1,94:32:95:0.989:2	0/1:66,51:32:117:0.436:2	0/1:1,122:32:123:0.992:2	0/1:5,123:33:128:0.961:2	0/1:0,104:33:104:1.00:2	0/1:0,63:32:63:1.00:2	0/1:57,46:31:103:0.447:2
chr6	130152452	rs9375666	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,31:30:31:1.00:2	./.	0/1:34,14:30:48:0.292:2	./.
chr6	130152479	rs7758540	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,47:31:86:0.547:2	0/1:35,27:30:62:0.435:2	./.	0/1:37,60:30:97:0.619:2	0/1:2,47:30:49:0.959:2	0/1:39,36:30:75:0.480:2	0/1:0,37:31:37:1.00:2	./.	0/1:42,44:32:86:0.512:2	0/1:28,51:31:79:0.646:2	0/1:0,91:30:91:1.00:2
chr6	130152520	rs7776426	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:48,47:33:95:0.495:2	0/1:34,23:31:57:0.404:2	./.	./.	0/1:46,22:32:68:0.324:2	0/1:48,46:32:94:0.489:2	0/1:0,44:33:44:1.00:2	./.	0/1:55,55:33:110:0.500:2	./.	0/1:3,117:32:120:0.975:2
chr6	130154667	rs9492393	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,20:33:48:0.417:2	0/1:24,24:32:48:0.500:2	./.	./.	0/1:2,57:33:59:0.966:2	./.	0/1:0,38:32:38:1.00:2	./.
chr6	130154686	rs4629709	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,24:33:49:0.490:2	0/1:10,12:32:22:0.545:2	./.	0/1:18,14:32:32:0.438:2	0/1:0,40:32:40:1.00:2	0/1:27,15:32:42:0.357:2	0/1:0,43:31:43:1.00:2	0/1:0,32:31:32:1.00:2	0/1:24,25:34:49:0.510:2	0/1:0,29:32:29:1.00:2	0/1:0,56:32:56:1.00:2
chr6	130164721	rs140845293	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,14:30:47:0.298:2	./.	./.	./.	./.
chr6	130166908	rs17396809	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,31:28:69:0.449:2	./.	0/1:33,8:28:41:0.195:2	./.
chr6	130374102	rs9388768	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,62:32:63:0.984:2	0/1:0,45:32:45:1.00:2	./.	0/1:39,37:31:76:0.487:2	0/1:1,78:31:79:0.987:2	./.	0/1:44,34:32:78:0.436:2	0/1:2,87:32:89:0.978:2	0/1:46,48:31:94:0.511:2	0/1:0,58:32:58:1.00:2	0/1:33,43:31:76:0.566:2
chr6	130381246	rs7451021	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,84:29:84:1.00:2	0/1:0,50:29:50:1.00:2	0/1:8,10:29:18:0.556:2	0/1:61,33:30:94:0.351:2	0/1:0,80:29:80:1.00:2	./.	0/1:77,55:29:132:0.417:2	0/1:0,130:28:130:1.00:2	0/1:51,52:30:103:0.505:2	0/1:0,80:29:80:1.00:2	0/1:61,67:29:128:0.523:2
chr6	130455012	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:29:66:0.061:2
chr6	130465787	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:31:99:0.040:2	./.	./.
chr6	130761798	rs3813360	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,24:34:44:0.545:2	./.	0/1:46,28:33:74:0.378:2
chr6	130761804	rs12200105	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,14:32:39:0.359:2	./.	./.	./.
chr6	130761957	rs3813359	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,45:29:79:0.570:2	./.	0/1:55,33:28:88:0.375:2
chr6	130764061	rs1058620	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,53:33:111:0.477:2	./.	0/1:87,54:32:141:0.383:2
chr6	131179302	rs61731767	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,64:33:116:0.552:2
chr6	131184770	rs915172	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:63,56:29:119:0.471:2	0/1:52,38:29:90:0.422:2	./.	./.	0/1:43,58:29:101:0.574:2	./.	0/1:46,55:29:101:0.545:2	./.	./.	./.	./.
chr6	131190838	rs17059736	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,75:32:153:0.490:2	./.	./.	./.	./.
chr6	131216115	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:31:85:0.047:2	./.
chr6	131216237	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,34:34:65:0.523:2	./.	./.
chr6	131490263	rs61756669	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,12:32:40:0.300:2	./.	./.
chr6	131520655	rs1190788	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:67,29:32:96:0.302:2	0/1:25,21:32:46:0.457:2	0/1:0,12:31:12:1.00:2	0/1:0,67:31:67:1.00:2	./.	0/1:47,44:31:91:0.484:2	./.	0/1:61,43:32:104:0.413:2	0/1:57,40:32:97:0.412:2	0/1:35,35:31:70:0.500:2	./.
chr6	131900390	rs34504481	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,16:31:47:0.340:2	./.	./.	./.
chr6	131919705	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	131948831	rs182779542	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,6:18:37:0.162:2	0/1:25,5:21:30:0.167:2	./.	./.	./.	./.	./.	./.
chr6	131962646	rs76529435	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,11:32:30:0.367:2	./.	./.	./.	./.	./.	./.	./.
chr6	131974025	rs61741318	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,24:31:35:0.686:2	./.	./.	./.	./.	./.	./.	./.
chr6	131992420	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:32:89:0.045:2	./.
chr6	131995313	rs9493048	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:43,46:29:89:0.517:2	0/1:29,27:27:56:0.482:2	./.	0/1:71,48:28:120:0.403:2	./.	./.	./.	./.	0/1:65,68:29:133:0.511:2	./.	./.
chr6	132022281	.	T	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:109,27:30:136:0.199:2	0/1:98,18:29:116:0.155:2	./.	0/1:159,22:27:181:0.122:2	./.	./.	0/1:153,20:30:174:0.116:2	./.	0/1:131,47:30:178:0.264:2	0/1:171,18:29:189:0.095:2	./.
chr6	132022285	rs199675686	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:135,45:30:180:0.250:2	./.	./.	./.	./.	./.	./.	./.
chr6	132022286	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:133,45:30:178:0.253:2	./.	./.	./.	./.	./.	./.	./.
chr6	132022419	rs201739285	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:43,25:31:68:0.368:2	0/1:39,13:31:52:0.250:2	./.	0/1:66,25:31:91:0.275:2	./.	./.	./.	./.	0/1:88,32:32:120:0.267:2	./.	./.
chr6	132029832	rs200479985	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:75,13:31:88:0.148:2	0/1:178,19:32:197:0.096:2	0/1:189,4:32:193:0.021:2	0/1:172,24:31:196:0.122:2	./.	0/1:183,14:32:197:0.071:2	./.	./.	0/1:175,18:32:194:0.093:2
chr6	132029857	rs201694043	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:170,23:30:193:0.119:2	./.	./.	./.	./.	0/1:170,27:33:197:0.137:2	./.	./.
chr6	132029865	rs201571587	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:77,11:32:88:0.125:2	0/1:182,12:32:194:0.062:2	0/1:188,5:30:193:0.026:2	0/1:152,45:32:197:0.228:2	./.	0/1:182,17:31:199:0.085:2	./.	./.	0/1:172,23:34:195:0.118:2
chr6	132029890	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,8:30:68:0.118:2	./.	./.	0/1:170,24:30:195:0.124:2	0/1:150,48:32:198:0.242:2	./.	0/1:126,72:33:199:0.364:2	0/1:172,26:31:198:0.131:2	./.
chr6	132029940	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,6:32:152:0.039:2	./.	./.	./.
chr6	132030057	rs200787695	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,21:31:77:0.273:2	./.	0/1:48,9:33:57:0.158:2	./.	0/1:60,5:33:65:0.077:2	0/1:71,10:33:81:0.123:2	0/1:82,4:33:86:0.047:2
chr6	132030081	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,7:31:89:0.079:2	./.	./.	./.	./.	./.	./.
chr6	132030137	rs200752094	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,17:31:88:0.193:2	./.	./.
chr6	132030195	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:97,12:33:109:0.110:2	0/1:52,11:30:63:0.175:2	0/1:11,4:31:15:0.267:2	0/1:91,10:33:101:0.099:2	0/1:58,28:31:86:0.326:2	0/1:84,6:32:90:0.067:2	0/1:45,9:32:54:0.167:2	0/1:107,5:32:112:0.045:2	0/1:104,4:32:108:0.037:2	0/1:80,15:32:95:0.158:2	0/1:134,13:33:147:0.088:2
chr6	132030243	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:169,11:30:180:0.061:2	./.	./.	./.	./.	./.	./.	./.
chr6	132030310	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,32:32:194:0.165:2	./.	./.
chr6	132030319	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,5:29:197:0.025:2	0/1:184,13:31:197:0.066:2	./.	./.	./.	./.	./.	./.
chr6	132030560	rs200750273	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,38:33:195:0.195:2	./.	./.
chr6	132030966	rs202051647	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,65:33:163:0.399:2	./.	./.	./.	./.	0/1:127,51:34:178:0.287:2	./.	./.
chr6	132031067	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant3-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:65,5:29:70:0.071:2	./.	./.	0/1:48,4:31:52:0.077:2	./.	./.	./.	./.	0/1:46,4:32:50:0.080:2	0/1:40,5:28:45:0.111:2	./.
chr6	132031116	.	T	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:39,6:33:45:0.133:2	./.	./.	./.	0/1:50,5:32:55:0.091:2	0/1:31,8:30:39:0.205:2	./.	./.	./.	0/1:27,4:32:31:0.129:2	./.
chr6	132031272	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	132031295	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,9:31:188:0.048:2	./.	0/1:179,6:32:185:0.032:2	./.	./.
chr6	132031496	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,12:16:177:0.068:2
chr6	132031695	.	C	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:87,6:28:94:0.065:2	./.	./.	0/1:52,6:30:58:0.103:2	0/1:81,5:31:86:0.058:2	0/1:51,4:31:55:0.073:2	0/1:39,11:30:50:0.220:2	./.	0/1:50,11:32:61:0.180:2	0/1:48,4:32:53:0.077:2	0/1:76,6:33:82:0.073:2
chr6	132032100	rs200148936	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,8:32:196:0.041:2	./.	./.
chr6	132061420	rs17601580	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,17:32:25:0.680:2	0/1:31,33:32:64:0.516:2
chr6	132168997	rs7773477	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,15:31:38:0.395:2	./.	./.
chr6	132172368	rs1044498	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:32:9:0.556:2	./.	./.	./.	./.	./.	0/1:42,36:33:78:0.462:2	./.	./.
chr6	132211534	rs1804025	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,58:30:128:0.453:2	0/1:44,54:28:98:0.551:2	./.
chr6	132271522	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:32:126:0.032:2	./.	./.
chr6	132271619	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:31:160:0.025:2	./.	./.	./.
chr6	132271952	rs7451102	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	./.	./.
chr6	132271959	rs12206231	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	./.	./.
chr6	132271980	rs6934749	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.
chr6	132641841	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:31:110:0.036:2	./.	./.	./.	./.	./.
chr6	132722527	rs77906164	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	0/1:0,2:30:2:1.00:2	./.
chr6	132859609	rs2842899	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,185:32:186:0.995:2	0/1:0,182:32:182:1.00:2	0/1:0,44:31:44:1.00:2	0/1:103,88:31:191:0.461:2	0/1:91,106:31:197:0.538:2	0/1:104,92:31:197:0.469:2	0/1:2,188:32:190:0.989:2	./.	0/1:100,96:32:196:0.490:2	0/1:0,182:32:182:1.00:2	0/1:0,184:32:184:1.00:2
chr6	132859770	rs36112096	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,84:31:197:0.426:2	./.	./.	0/1:121,77:33:198:0.389:2	./.	./.
chr6	132874594	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,50:32:107:0.467:2	./.	./.
chr6	132892253	rs8192624	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,36:32:56:0.643:2	./.	./.
chr6	132892332	rs8192625	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,42:31:103:0.408:2	./.	./.
chr6	132910074	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:31:111:0.036:2	./.	./.	./.
chr6	132910543	rs41286168	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	132910612	rs3813355	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:30:10:1.00:2	0/1:41,35:33:76:0.461:2	0/1:50,56:31:106:0.528:2	0/1:0,91:31:91:1.00:2	0/1:50,40:31:90:0.444:2	./.	0/1:0,81:32:81:1.00:2	0/1:0,54:32:54:1.00:2	0/1:40,32:32:72:0.444:2
chr6	132910634	rs3813354	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,9:31:13:0.692:2	./.	./.	./.	0/1:50,46:30:96:0.479:2	./.	./.	./.	./.
chr6	132938694	rs202232027	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,7:19:41:0.171:2	./.	./.	0/1:30,7:17:37:0.189:2	0/1:34,9:14:43:0.209:2	0/1:31,10:14:41:0.244:2	./.	0/1:35,12:17:47:0.255:2	./.	./.	./.
chr6	132938817	rs61745666	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,24:31:40:0.600:2	0/1:8,9:31:17:0.529:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	132938842	rs8192646	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,10:32:22:0.455:2	./.	./.	./.	./.	./.	./.
chr6	132966279	rs8192620	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,4:32:138:0.029:2	0/1:58,51:32:109:0.468:2	0/1:72,51:32:123:0.415:2	./.	./.	0/1:1,168:33:169:0.994:2	./.	./.
chr6	133005572	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	133013544	rs45562238	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,27:29:52:0.519:2	0/1:18,9:28:27:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	133014413	rs45530734	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,19:32:41:0.463:2	0/1:20,15:32:35:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	133015271	rs2272996	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:46,45:33:91:0.495:2	0/1:32,23:32:55:0.418:2	./.	0/1:71,59:33:131:0.454:2	./.	0/1:71,62:33:133:0.466:2	0/1:57,63:33:120:0.525:2	./.	0/1:76,81:34:157:0.516:2	./.	./.
chr6	133034975	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:154,4:32:158:0.025:2	./.	./.	./.	./.	./.	./.
chr6	133035098	rs2294757	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:35,26:32:61:0.426:2	0/1:29,23:32:52:0.442:2	0/1:1,10:30:11:0.909:2	./.	./.	./.	0/1:58,44:30:102:0.431:2	./.	0/1:47,45:32:92:0.489:2	./.	0/1:0,71:32:71:1.00:2
chr6	133048024	rs6569834	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:31:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	133052616	rs4895943	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,144:32:144:1.00:2	0/1:1,98:31:99:0.990:2	0/1:16,8:31:24:0.333:2	0/1:90,69:31:160:0.434:2	./.	0/1:2,144:30:146:0.986:2	0/1:74,66:31:140:0.471:2	0/1:119,70:31:189:0.370:2	0/1:90,96:32:186:0.516:2	0/1:97,96:31:193:0.497:2	0/1:98,74:32:172:0.430:2
chr6	133070995	rs4895944	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,74:30:74:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,51:32:51:1.00:2
chr6	133072650	rs1883617	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,17:32:42:0.415:2	0/1:14,13:32:27:0.481:2	0/1:1,4:33:5:0.800:2	0/1:36,17:30:54:0.321:2	./.	./.	./.	./.	0/1:21,14:33:35:0.400:2	0/1:15,15:33:30:0.500:2	0/1:21,33:32:55:0.611:2
chr6	133073811	rs34492437	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,32:30:68:0.471:2
chr6	133073844	rs33980664	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,33:33:68:0.485:2	0/1:15,28:32:43:0.651:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	133077063	rs1883613	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:80,48:30:128:0.375:2	0/1:36,32:29:68:0.471:2	0/1:3,10:30:13:0.769:2	0/1:70,57:30:127:0.449:2	./.	./.	./.	./.	0/1:84,68:29:152:0.447:2	0/1:59,64:29:123:0.520:2	0/1:76,68:29:144:0.472:2
chr6	133105120	rs6926101	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:32:16:0.563:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	133108634	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:33:171:0.023:2
chr6	133135864	rs12202302	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,11:32:11:1.00:2	0/1:0,7:32:7:1.00:2	./.	0/1:7,4:32:11:0.364:2	./.	0/1:3,5:30:8:0.625:2	./.	0/1:2,10:26:12:0.833:2	0/1:7,6:33:13:0.462:2	0/1:3,9:31:12:0.750:2	./.
chr6	133135886	rs9483504	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,15:31:15:1.00:2	0/1:0,9:33:9:1.00:2	./.	0/1:6,3:33:9:0.333:2	./.	0/1:5,4:32:9:0.444:2	0/1:2,12:32:14:0.857:2	0/1:4,12:31:16:0.750:2	0/1:7,8:33:15:0.533:2	0/1:5,10:32:15:0.667:2	./.
chr6	133138600	rs117573035	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,4:31:12:0.333:2	./.	./.	./.	./.	./.	./.	./.
chr6	133789728	rs9493627	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,78:31:78:1.00:2	0/1:48,38:30:86:0.442:2	./.	./.	0/1:82,57:30:139:0.410:2	./.	./.	0/1:49,48:32:97:0.495:2
chr6	133789765	rs41286200	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,40:31:89:0.449:2	./.	./.	./.	./.	./.	./.
chr6	134304023	rs2076583	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:33:4:1.00:2	0/1:26,22:31:48:0.458:2	0/1:30,21:30:51:0.412:2	0/1:35,35:32:70:0.500:2	0/1:2,36:32:38:0.947:2	0/1:2,75:32:77:0.974:2	0/1:48,39:33:87:0.448:2	0/1:27,21:32:48:0.438:2	0/1:0,64:32:64:1.00:2
chr6	134308187	rs11553666	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,9:31:14:0.643:2	./.	0/1:10,3:30:13:0.231:2	./.	./.	./.	./.	./.
chr6	134492266	rs78176488	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,15:16:144:0.104:2
chr6	135239758	rs41286234	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,10:32:27:0.370:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	135263557	rs3813342	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,29:32:53:0.547:2	./.	0/1:22,24:33:46:0.522:2	./.	./.
chr6	135287533	rs13064	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:33,35:33:68:0.515:2	0/1:14,13:34:27:0.481:2	./.	0/1:49,32:32:81:0.395:2	./.	0/1:35,44:32:79:0.557:2	./.	0/1:31,33:33:64:0.516:2	./.	./.	0/1:0,88:33:88:1.00:2
chr6	135303626	rs200625517	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,39:34:69:0.565:2	./.	./.
chr6	135358279	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:33:71:0.056:2
chr6	135358567	rs7742542	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:43,33:32:76:0.434:2	0/1:16,18:33:34:0.529:2	./.	0/1:43,36:33:79:0.456:2	./.	0/1:39,29:32:68:0.426:2	0/1:20,13:33:33:0.394:2	0/1:24,20:33:44:0.455:2	0/1:57,27:31:84:0.321:2	./.	0/1:0,93:32:93:1.00:2
chr6	135358916	rs9373121	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,47:32:121:0.388:2	./.	0/1:114,70:33:184:0.380:2	./.	./.
chr6	135358964	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:34:196:0.020:2
chr6	135375762	rs2297338	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:13,12:33:25:0.480:2	0/1:12,11:29:23:0.478:2	./.	0/1:21,15:31:36:0.417:2	./.	0/1:21,15:30:36:0.417:2	0/1:24,29:32:53:0.547:2	0/1:37,36:31:73:0.493:2	0/1:20,13:31:33:0.394:2	./.	0/1:0,29:32:29:1.00:2
chr6	135510960	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:30:47:0.085:2
chr6	135518234	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,33:31:95:0.347:2	./.	./.	./.	./.	./.
chr6	135521535	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:30:44:0.091:2
chr6	135539103	rs35664708	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:50,57:31:107:0.533:2	0/1:39,31:32:70:0.443:2	./.	./.	0/1:69,74:30:144:0.517:2	./.	./.	./.	./.	./.	./.
chr6	135606755	rs9494209	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,5:33:9:0.556:2	./.	./.	./.	./.
chr6	135726131	rs41287056	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,13:33:28:0.464:2	./.	./.	./.	./.	./.	./.	./.
chr6	135732649	rs41288013	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,46:32:90:0.511:2	./.	./.	0/1:52,46:33:98:0.469:2	./.	./.
chr6	135749885	rs41288017	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,12:31:27:0.444:2	./.	./.	0/1:23,14:32:37:0.378:2	./.	./.
chr6	135751024	rs13312995	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,9:32:14:0.643:2	./.	./.	./.	./.	./.	./.
chr6	136476970	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,4:33:65:0.062:2	./.	./.	./.	./.	./.	./.
chr6	136508262	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,4:27:32:0.125:2	./.	./.	./.
chr6	136582203	rs74299323	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:60,19:28:80:0.241:2	./.	0/1:120,28:28:152:0.189:2	0/1:77,22:28:100:0.222:2	0/1:101,22:28:126:0.179:2	0/1:55,14:29:70:0.203:2	0/1:91,22:28:116:0.195:2	0/1:117,31:29:151:0.209:2	0/1:90,20:28:112:0.182:2	0/1:123,32:29:155:0.206:2
chr6	136582241	rs76890371	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:93,6:34:99:0.061:2	0/1:41,7:32:48:0.146:2	./.	0/1:113,9:33:122:0.074:2	./.	./.	./.	./.	./.	./.	./.
chr6	136582401	rs62431282	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:73,12:30:85:0.141:2	0/1:37,9:32:46:0.196:2	./.	0/1:64,16:30:80:0.200:2	0/1:64,12:30:76:0.158:2	0/1:72,14:29:86:0.163:2	0/1:47,8:31:55:0.145:2	0/1:79,24:30:104:0.233:2	0/1:80,10:28:90:0.111:2	0/1:64,9:29:73:0.123:2	0/1:119,11:32:130:0.085:2
chr6	136582417	rs62431283	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:97,24:31:121:0.198:2	0/1:57,22:32:79:0.278:2	0/1:9,5:32:14:0.357:2	0/1:109,36:31:145:0.248:2	0/1:92,26:30:118:0.220:2	0/1:95,31:32:126:0.246:2	0/1:71,21:32:92:0.228:2	0/1:119,46:32:165:0.279:2	0/1:116,22:32:138:0.159:2	0/1:99,22:31:121:0.182:2	0/1:170,29:32:199:0.146:2
chr6	136582497	rs62431284	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:98,60:32:158:0.380:2	0/1:65,48:32:113:0.425:2	0/1:6,6:30:12:0.500:2	0/1:130,44:31:174:0.253:2	0/1:86,43:31:129:0.333:2	0/1:95,72:31:167:0.431:2	0/1:77,47:32:124:0.379:2	0/1:90,64:32:154:0.416:2	0/1:107,66:32:173:0.382:2	0/1:97,68:32:165:0.412:2	0/1:101,50:32:151:0.331:2
chr6	136582549	rs61731058	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,14:31:94:0.149:2	./.	./.	0/1:88,23:32:111:0.207:2	./.	./.	./.
chr6	136589311	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:31:107:0.037:2	./.
chr6	136589425	rs77081633	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:69,55:32:124:0.444:2	0/1:60,39:31:99:0.394:2	./.	./.	./.	./.	./.	./.	./.	0/1:84,29:30:113:0.257:2	./.
chr6	136589448	rs78267720	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,6:32:21:0.286:2	./.	0/1:43,26:31:69:0.377:2	0/1:49,33:30:82:0.402:2	0/1:78,13:32:92:0.143:2	0/1:70,12:32:82:0.146:2	0/1:79,21:32:101:0.210:2	./.	0/1:105,20:32:125:0.160:2
chr6	136590613	rs62431285	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:87,18:30:105:0.171:2	0/1:70,9:31:79:0.114:2	./.	0/1:94,28:30:122:0.230:2	0/1:70,11:30:81:0.136:2	0/1:78,29:30:107:0.271:2	0/1:70,8:31:78:0.103:2	0/1:114,17:32:131:0.130:2	0/1:78,23:32:101:0.228:2	0/1:87,18:32:105:0.171:2	0/1:144,15:31:159:0.094:2
chr6	136590640	rs62431286	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:92,23:30:115:0.200:2	0/1:71,14:32:85:0.165:2	./.	0/1:103,47:33:150:0.313:2	0/1:74,23:31:97:0.237:2	0/1:86,45:32:131:0.344:2	0/1:84,13:32:97:0.134:2	0/1:122,38:31:160:0.238:2	0/1:78,33:32:111:0.297:2	0/1:74,26:32:100:0.260:2	0/1:133,30:32:163:0.184:2
chr6	136590698	rs62431287	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:67,22:32:90:0.247:2	0/1:44,13:31:58:0.228:2	./.	0/1:82,17:32:99:0.172:2	0/1:57,21:31:78:0.269:2	0/1:59,33:31:92:0.359:2	0/1:50,13:32:63:0.206:2	0/1:65,38:31:104:0.369:2	0/1:71,27:30:98:0.276:2	0/1:38,21:32:59:0.356:2	0/1:71,34:30:105:0.324:2
chr6	136590712	rs62431288	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:56,18:32:74:0.243:2	0/1:38,11:31:49:0.224:2	./.	0/1:59,26:31:85:0.306:2	0/1:55,15:31:70:0.214:2	0/1:54,28:31:82:0.341:2	0/1:47,12:32:59:0.203:2	0/1:61,28:31:89:0.315:2	0/1:65,19:31:84:0.226:2	0/1:36,18:32:54:0.333:2	0/1:58,29:30:87:0.333:2
chr6	136593163	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:29:96:0.042:2	./.
chr6	136593176	rs149575969	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:33:89:0.045:2	./.
chr6	136594277	rs75713094	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:173,18:31:191:0.094:2	./.	./.	./.	./.	./.	./.	./.
chr6	136594292	rs7381749	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:109,29:33:138:0.210:2	0/1:61,4:33:65:0.062:2	./.	0/1:165,17:33:182:0.093:2	0/1:141,31:33:172:0.180:2	0/1:141,42:33:183:0.230:2	0/1:137,42:31:179:0.235:2	0/1:158,35:34:193:0.181:2	0/1:131,18:33:149:0.121:2	0/1:131,39:33:170:0.229:2	0/1:147,27:34:175:0.155:2
chr6	136596776	rs78118727	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,23:32:152:0.151:2	./.	./.	./.	./.	./.	./.	./.
chr6	136597004	rs7762367	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,16:28:52:0.308:2	0/1:27,11:27:38:0.289:2	./.	0/1:34,32:28:66:0.485:2	0/1:48,8:29:56:0.143:2	0/1:54,20:27:74:0.270:2	0/1:43,21:29:64:0.328:2	0/1:46,30:27:76:0.395:2	0/1:60,19:27:79:0.241:2	0/1:29,27:28:56:0.482:2	0/1:60,27:28:87:0.310:2
chr6	136597174	rs77469096	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:158,41:31:200:0.206:2	./.	./.	./.	./.	./.	./.	./.
chr6	136597197	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:32:193:0.026:2	0/1:178,4:32:182:0.022:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	136597262	rs1967444	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,72:32:150:0.480:2	0/1:60,65:32:125:0.520:2	0/1:16,9:32:25:0.360:2	0/1:85,73:32:158:0.462:2	0/1:76,41:30:117:0.350:2	0/1:89,68:31:157:0.433:2	0/1:75,50:32:125:0.400:2	0/1:64,75:31:139:0.540:2	0/1:101,67:32:168:0.399:2	0/1:65,64:31:129:0.496:2	0/1:95,75:32:170:0.441:2
chr6	136597281	rs1967445	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,71:32:144:0.493:2	0/1:56,60:32:116:0.517:2	0/1:10,14:31:24:0.583:2	0/1:139,36:31:175:0.206:2	0/1:53,47:32:100:0.470:2	0/1:89,80:31:170:0.473:2	0/1:63,43:32:106:0.406:2	0/1:70,86:31:157:0.551:2	0/1:96,63:33:159:0.396:2	0/1:59,59:32:118:0.500:2	0/1:95,71:32:166:0.428:2
chr6	136597288	rs1967446	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,67:32:145:0.462:2	0/1:55,55:33:110:0.500:2	0/1:10,18:32:28:0.643:2	0/1:138,33:32:171:0.193:2	0/1:49,46:31:95:0.484:2	0/1:89,78:31:167:0.467:2	0/1:65,48:32:113:0.425:2	0/1:71,93:32:164:0.567:2	0/1:98,59:33:157:0.376:2	0/1:61,58:32:119:0.487:2	0/1:88,71:33:159:0.447:2
chr6	136599393	rs6940018	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,43:32:76:0.566:2	0/1:22,20:31:42:0.476:2	0/1:6,4:33:10:0.400:2	0/1:42,38:32:80:0.475:2	0/1:35,28:32:63:0.444:2	0/1:43,37:31:80:0.463:2	0/1:27,36:32:63:0.571:2	0/1:51,38:32:89:0.427:2	0/1:56,40:33:96:0.417:2	0/1:44,27:33:71:0.380:2	0/1:51,41:33:92:0.446:2
chr6	136599404	rs6919254	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,33:27:66:0.508:2	0/1:17,18:28:35:0.514:2	0/1:4,4:22:8:0.500:2	0/1:55,13:28:68:0.191:2	0/1:27,23:27:50:0.460:2	0/1:41,37:27:78:0.474:2	0/1:28,27:27:55:0.491:2	0/1:39,36:28:75:0.480:2	0/1:45,32:28:77:0.416:2	0/1:42,23:30:65:0.354:2	0/1:50,37:27:87:0.425:2
chr6	136599458	rs6939752	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,12:32:38:0.316:2	./.	./.	./.	./.	./.	./.	./.
chr6	136599822	rs9942517	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,31:32:73:0.425:2	0/1:29,25:32:54:0.463:2	0/1:9,5:32:14:0.357:2	0/1:29,42:31:71:0.592:2	0/1:27,23:31:50:0.460:2	0/1:38,22:30:60:0.367:2	0/1:27,27:32:54:0.500:2	0/1:48,52:32:100:0.520:2	0/1:63,22:33:85:0.259:2	0/1:37,37:33:74:0.500:2	0/1:36,24:33:60:0.400:2
chr6	136599836	rs9942518	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,27:31:59:0.458:2	0/1:25,15:31:40:0.375:2	0/1:7,5:30:12:0.417:2	0/1:43,10:31:53:0.189:2	0/1:17,22:30:39:0.564:2	0/1:28,20:30:48:0.417:2	0/1:23,17:31:40:0.425:2	0/1:38,37:31:75:0.493:2	0/1:48,14:31:62:0.226:2	0/1:27,29:31:56:0.518:2	0/1:29,15:31:44:0.341:2
chr6	136599842	rs9942519	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,23:30:53:0.434:2	0/1:26,13:31:39:0.333:2	0/1:6,5:31:11:0.455:2	0/1:19,26:31:45:0.578:2	0/1:15,18:30:34:0.545:2	0/1:24,21:30:45:0.467:2	0/1:20,14:31:34:0.412:2	0/1:36,31:31:67:0.463:2	0/1:39,14:33:53:0.264:2	0/1:26,24:32:50:0.480:2	0/1:27,11:32:38:0.289:2
chr6	136600949	rs149618892	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,3:32:37:0.081:2	./.	0/1:29,4:32:33:0.121:2	./.	./.
chr6	136667071	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:33:123:0.033:2
chr6	136681130	rs147645484	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,39:31:101:0.386:2	./.	./.	./.
chr6	136681885	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,6:33:126:0.048:2	./.	./.
chr6	136682172	rs2076190	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.
chr6	136687065	rs35350783	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,53:30:105:0.505:2	./.	./.	./.	./.	./.	./.	./.
chr6	136882715	rs41288957	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,12:32:23:0.522:2	./.
chr6	136960710	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:33:152:0.026:2	./.
chr6	136977568	rs2076260	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:33:12:0.583:2	./.	./.	0/1:24,29:33:53:0.547:2	0/1:4,12:30:16:0.750:2	0/1:14,23:33:37:0.622:2	./.	0/1:10,20:33:30:0.667:2	0/1:36,27:33:63:0.429:2
chr6	137026266	rs9321567	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:30:4:0.750:2	0/1:17,12:33:29:0.414:2	./.	0/1:0,47:32:47:1.00:2	./.	./.	./.	0/1:0,26:33:26:1.00:2	./.
chr6	137113137	rs55666429	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:28:4:1.00:2	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.
chr6	137245534	rs150994900	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,50:31:90:0.556:2	./.
chr6	137295334	rs2040034	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,28:32:28:1.00:2	0/1:0,18:32:18:1.00:2	./.	0/1:29,14:30:43:0.326:2	0/1:19,10:31:29:0.345:2	0/1:0,29:32:29:1.00:2	0/1:0,28:32:28:1.00:2	0/1:29,25:31:54:0.463:2	0/1:30,14:34:44:0.318:2	./.	0/1:0,48:32:48:1.00:2
chr6	137295352	rs2876354	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:18,11:31:29:0.379:2	0/1:10,7:32:17:0.412:2	./.	0/1:23,12:32:35:0.343:2	./.	0/1:17,7:32:24:0.292:2	0/1:22,7:31:29:0.241:2	0/1:30,15:30:45:0.333:2	0/1:21,9:33:30:0.300:2	./.	0/1:22,17:32:39:0.436:2
chr6	137323213	rs1342642	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:32:11:0.273:2	./.	0/1:32,18:30:50:0.360:2	./.	./.	./.	0/1:68,35:32:103:0.340:2	0/1:40,24:31:64:0.375:2	0/1:72,34:31:106:0.321:2
chr6	137325847	rs1555498	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:32:22:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,33:31:33:1.00:2
chr6	137482835	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:32:169:0.024:2	./.	./.
chr6	137519588	rs11914	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,10:31:12:0.833:2	./.	./.	./.	./.	./.	0/1:0,69:31:69:1.00:2	./.	0/1:56,47:29:103:0.456:2
chr6	137536455	rs1327475	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:30:7:0.429:2	./.	./.	./.	./.	./.	0/1:0,84:32:84:1.00:2	./.	0/1:86,42:32:130:0.328:2
chr6	137815120	rs62434134	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,36:29:85:0.429:2	./.	./.
chr6	138196886	rs375378882	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:33:88:0.045:2
chr6	138413269	rs648396	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:30:70:1.00:2	0/1:0,42:30:42:1.00:2	0/1:6,5:26:11:0.455:2	0/1:48,47:31:95:0.495:2	0/1:53,38:29:91:0.418:2	0/1:66,42:29:108:0.389:2	0/1:49,36:30:85:0.424:2	0/1:3,90:30:93:0.968:2	0/1:0,66:31:66:1.00:2	./.	0/1:2,76:30:78:0.974:2
chr6	138413333	rs648802	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,62:28:63:0.984:2	0/1:0,32:29:32:1.00:2	0/1:4,4:28:8:0.500:2	0/1:52,47:28:99:0.475:2	0/1:33,26:28:59:0.441:2	0/1:45,37:29:82:0.451:2	0/1:28,29:28:57:0.509:2	0/1:0,71:28:71:1.00:2	0/1:1,57:29:58:0.983:2	./.	0/1:1,80:29:81:0.988:2
chr6	138491807	rs116359974	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,12:32:28:0.429:2	./.	./.	./.	./.	./.	./.	./.
chr6	138491854	rs74590195	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:33:7:0.429:2	0/1:21,24:32:45:0.533:2	./.	./.	./.	./.	./.	./.	./.
chr6	138539315	rs6927706	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,91:33:156:0.583:2	./.
chr6	138539556	rs11758517	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,13:33:31:0.419:2	./.
chr6	138564123	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:33:176:0.023:2	./.	./.
chr6	138584685	rs7764091	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:0,17:33:17:1.00:2	0/1:0,8:32:8:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:7,6:31:13:0.462:2	./.
chr6	138615148	rs203145	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,68:34:68:1.00:2	0/1:1,33:33:34:0.971:2	0/1:10,7:32:17:0.412:2	./.	0/1:40,16:32:56:0.286:2	./.	0/1:37,24:33:61:0.393:2	./.	./.	./.	0/1:50,51:33:101:0.505:2
chr6	138645228	rs3734301	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:18,15:31:33:0.455:2	0/1:14,9:32:23:0.391:2	./.	./.	./.	./.	./.	./.	./.	0/1:11,11:32:22:0.500:2	./.
chr6	138657595	rs372977543	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,20:19:83:0.244:2	./.	0/1:7,6:15:13:0.462:2	0/1:108,30:14:138:0.217:2	0/1:90,36:15:126:0.286:2	0/1:104,26:16:130:0.200:2	0/1:96,34:16:130:0.262:2	0/1:106,28:16:134:0.209:2	0/1:105,24:15:129:0.186:2	0/1:76,15:18:91:0.165:2	0/1:66,12:20:78:0.154:2
chr6	138726403	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:32:51:0.078:2
chr6	138734029	rs2076279	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,40:33:100:0.400:2	0/1:43,18:33:62:0.295:2	./.	./.	./.	./.	./.	./.	0/1:91,59:34:150:0.393:2	./.	./.
chr6	138745881	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:33:53:0.075:2	./.
chr6	138745932	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:33:44:0.091:2	./.	./.	./.	./.	./.
chr6	138753337	rs2039121	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,21:30:40:0.525:2	0/1:14,9:32:23:0.391:2	./.	./.	0/1:26,19:30:45:0.422:2	0/1:0,48:30:48:1.00:2	0/1:1,72:31:73:0.986:2	0/1:0,60:30:60:1.00:2	0/1:20,29:32:49:0.592:2	0/1:0,36:29:36:1.00:2	0/1:18,22:31:40:0.550:2
chr6	138753437	rs183135718	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,24:31:51:0.471:2	./.	./.	./.	./.	./.
chr6	138754323	rs2327891	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,84:32:84:1.00:2	0/1:0,37:32:37:1.00:2	./.	./.	0/1:39,33:33:72:0.458:2	0/1:0,88:32:88:1.00:2	0/1:0,99:33:99:1.00:2	0/1:0,94:33:94:1.00:2	0/1:1,96:34:97:0.990:2	0/1:0,58:33:58:1.00:2	0/1:72,71:33:143:0.497:2
chr6	139094937	rs11154999	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,79:31:79:1.00:2	./.	./.
chr6	139159570	rs372385966	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,4:35:94:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr6	139164181	rs55646272	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,69:31:146:0.473:2	./.	./.
chr6	139165645	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:34:134:0.030:2	./.	./.
chr6	139197609	rs1529151	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,9:31:28:0.321:2	0/1:10,8:32:18:0.444:2	./.	0/1:8,13:32:21:0.619:2	0/1:0,3:33:3:1.00:2	0/1:9,9:31:18:0.500:2	./.	./.	./.	0/1:0,21:31:21:1.00:2	./.
chr6	139202226	rs190995561	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,24:33:72:0.333:2	0/1:25,17:32:42:0.405:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	139206937	rs17067993	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,31:32:71:0.437:2	./.
chr6	139229872	rs1044418	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,68:32:157:0.433:2	0/1:38,38:32:76:0.500:2	./.	./.	./.	0/1:86,73:31:159:0.459:2	./.	./.	./.	0/1:89,86:32:175:0.491:2	./.
chr6	139266402	rs1569238	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,18:30:37:0.486:2	./.
chr6	139355580	rs6905593	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,12:32:26:0.462:2	0/1:18,14:31:32:0.438:2	./.	./.	0/1:16,9:31:25:0.360:2	0/1:17,13:31:30:0.433:2	./.	0/1:22,11:31:33:0.333:2	0/1:20,14:32:34:0.412:2	0/1:12,11:32:23:0.478:2	./.
chr6	139487836	rs3173082	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,8:27:18:0.500:2	0/1:9,8:30:17:0.471:2	./.	0/1:0,21:28:21:1.00:2	0/1:0,19:29:19:1.00:2	0/1:0,27:28:27:1.00:2	0/1:0,21:25:21:1.00:2	0/1:0,26:28:26:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,14:28:14:1.00:2	0/1:9,9:30:18:0.500:2
chr6	139488160	rs34476011	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,17:30:37:0.459:2	./.	./.	./.	./.	./.	0/1:27,11:29:38:0.289:2	./.
chr6	139563914	rs9495391	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:19,37:32:56:0.661:2	0/1:19,15:30:34:0.441:2	0/1:3,2:34:5:0.400:2	./.	0/1:60,43:30:103:0.417:2	./.	0/1:56,24:31:80:0.300:2	./.	0/1:55,29:31:84:0.345:2	0/1:1,41:33:42:0.976:2	0/1:42,35:32:77:0.455:2
chr6	139564101	rs12529180	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,24:32:57:0.421:2	0/1:17,14:33:31:0.452:2	./.	./.	./.	./.	./.	./.	0/1:31,24:33:55:0.436:2	./.	./.
chr6	139564156	rs138739792	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,37:33:67:0.552:2	./.	./.	./.	./.	./.	./.
chr6	139576544	rs41289819	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,5:27:20:0.250:2	0/1:7,8:32:15:0.533:2	./.	./.	./.	./.	./.	./.	0/1:17,4:32:21:0.190:2	0/1:13,6:30:19:0.316:2	./.
chr6	139576591	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,3:32:48:0.063:2	./.	./.	./.	./.
chr6	139576736	rs17068451	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:22,34:32:56:0.607:2	0/1:16,10:32:26:0.385:2	./.	./.	./.	./.	0/1:62,25:32:87:0.287:2	./.	0/1:38,30:32:68:0.441:2	0/1:27,27:31:54:0.500:2	./.
chr6	139581461	rs6904970	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,52:32:110:0.477:2	./.	./.	0/1:52,30:33:82:0.366:2	./.
chr6	139694675	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,5:29:157:0.032:2	./.	./.	./.	./.	./.
chr6	142396790	rs7453944	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,39:31:92:0.424:2	./.	./.	./.	./.	./.	./.	./.
chr6	142691549	rs11155242	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,44:33:77:0.571:2	./.	./.	./.	./.	0/1:23,22:34:45:0.489:2	./.	0/1:1,96:32:97:0.990:2
chr6	142703137	rs2143390	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,20:31:45:0.444:2	0/1:16,13:32:29:0.448:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	142718801	rs989946	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,128:32:128:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,17:32:17:1.00:2	0/1:5,146:31:151:0.967:2	0/1:0,79:31:79:1.00:2	0/1:100,60:31:160:0.375:2	0/1:0,67:32:67:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,192:33:192:1.00:2	0/1:0,98:32:98:1.00:2	0/1:1,184:32:186:0.995:2
chr6	142738418	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:159,4:32:163:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr6	142758631	rs1262686	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:28:39:1.00:2	0/1:0,33:28:33:1.00:2	0/1:0,3:29:3:1.00:2	0/1:0,49:29:49:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,45:29:45:1.00:2	0/1:0,34:28:34:1.00:2	0/1:0,54:28:54:1.00:2	0/1:0,51:29:51:1.00:2	0/1:0,46:29:46:1.00:2	0/1:0,71:28:71:1.00:2
chr6	143074411	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:33:172:0.023:2	./.	./.	./.
chr6	143074700	rs169098	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,100:29:100:1.00:2	0/1:2,70:29:72:0.972:2	0/1:0,13:28:13:1.00:2	0/1:51,50:28:101:0.495:2	0/1:0,72:28:72:1.00:2	0/1:0,97:28:97:1.00:2	0/1:54,51:27:105:0.486:2	0/1:0,100:28:100:1.00:2	0/1:0,105:28:105:1.00:2	0/1:0,116:29:116:1.00:2	0/1:37,57:28:94:0.606:2
chr6	143081035	rs9496457	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:67,71:33:138:0.514:2	0/1:56,33:32:89:0.371:2	./.	./.	0/1:63,58:31:121:0.479:2	0/1:92,72:32:164:0.439:2	0/1:84,57:32:141:0.404:2	./.	0/1:102,76:32:178:0.427:2	./.	0/1:88,77:32:165:0.467:2
chr6	143090734	rs34530989	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,39:33:82:0.476:2	./.	0/1:32,18:32:50:0.360:2	./.	./.	./.	./.	./.
chr6	143090803	rs34296594	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,56:31:115:0.487:2	./.	0/1:61,32:32:93:0.344:2	./.
chr6	143091263	rs109836	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:29:103:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,85:29:85:1.00:2	0/1:0,78:29:78:1.00:2	0/1:0,78:29:78:1.00:2	0/1:0,93:28:93:1.00:2	0/1:0,87:29:87:1.00:2	0/1:0,108:30:108:1.00:2	0/1:0,77:29:77:1.00:2	0/1:0,103:29:104:1.00:2
chr6	143091769	rs34947356	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,34:32:89:0.382:2	./.	0/1:34,45:32:79:0.570:2	./.	./.	./.	./.	./.
chr6	143092151	rs139717578	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,67:33:134:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr6	143093607	rs372948812	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,32:31:60:0.533:2	./.	./.	./.	./.	./.
chr6	143095633	rs62430681	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,9:33:30:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	143382110	rs1053192	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,53:32:100:0.530:2	./.	./.	./.	./.	./.	0/1:42,20:32:62:0.323:2
chr6	143486249	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:34:146:0.027:2
chr6	143753713	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,5:30:106:0.047:2
chr6	143792675	rs22908	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,25:33:25:1.00:2	./.	0/1:16,9:33:25:0.360:2	0/1:0,8:32:8:1.00:2	./.	0/1:15,25:34:40:0.625:2	./.	0/1:0,40:32:40:1.00:2
chr6	143792683	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,9:32:19:0.474:2	./.
chr6	143816859	rs8161	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,10:31:22:0.455:2	0/1:34,39:30:73:0.534:2	0/1:40,42:31:82:0.512:2	0/1:45,33:30:78:0.423:2	0/1:64,65:31:129:0.504:2	0/1:96,52:30:148:0.351:2	./.	0/1:30,43:31:73:0.589:2	./.
chr6	143823112	rs3762001	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,15:29:24:0.625:2	./.	./.	0/1:26,33:31:59:0.559:2	./.	0/1:15,17:32:32:0.531:2	./.
chr6	143823157	rs3762002	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,24:32:40:0.600:2	./.	./.	0/1:30,31:33:61:0.508:2	./.	0/1:17,23:33:40:0.575:2	./.
chr6	143823527	rs72992630	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,92:33:197:0.467:2
chr6	143825104	rs11155297	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:32:11:0.727:2	./.	./.	./.	./.	./.	0/1:70,66:32:136:0.485:2	./.	0/1:60,67:31:127:0.528:2
chr6	143929450	rs41285023	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,29:31:56:0.518:2	./.	./.	./.	./.	./.	./.	./.
chr6	144081609	rs2073214	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,16:31:57:0.281:2	0/1:24,25:30:49:0.510:2	./.	./.	./.	./.	./.	./.
chr6	144181619	rs7454959	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:32:117:0.034:2	./.	./.	./.
chr6	144262819	rs72546304	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,9:30:22:0.409:2	./.	./.	./.	./.
chr6	144263538	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:87,4:30:91:0.044:2	./.	./.	./.	./.	./.	./.
chr6	144416537	rs199548273	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:105,6:22:111:0.054:2	./.	./.	0/1:137,19:15:157:0.122:2	0/1:144,18:12:162:0.111:2	0/1:124,22:13:146:0.151:2	0/1:130,19:11:149:0.128:2	0/1:133,13:14:146:0.089:2	./.	0/1:100,12:19:112:0.107:2	0/1:112,16:20:128:0.125:2
chr6	144508698	rs3734228	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,12:28:19:0.632:2	./.	./.	0/1:8,7:28:15:0.467:2	./.	./.	./.	./.
chr6	144509510	rs17073503	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,100:32:195:0.513:2	./.	./.	0/1:95,94:32:189:0.497:2	./.	./.	./.	./.
chr6	144509855	rs148087652	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:18:10:0.500:2	./.	./.	./.	./.	0/1:7,4:19:11:0.364:2	./.	./.
chr6	144510124	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.
chr6	144510153	rs7772146	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.
chr6	144510421	rs4896705	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,26:31:26:1.00:2	./.	0/1:0,13:31:13:1.00:2	0/1:8,8:31:16:0.500:2	0/1:11,3:32:14:0.214:2	./.
chr6	144510926	rs3734227	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,26:31:26:1.00:2	./.	0/1:1,34:32:35:0.971:2	0/1:13,10:32:23:0.435:2	0/1:23,16:31:39:0.410:2	./.
chr6	144512989	rs6912580	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,12:32:51:0.235:2	./.	./.	0/1:28,10:32:38:0.263:2	./.	./.	./.	./.
chr6	144513001	rs6935462	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,11:33:50:0.220:2	./.	./.	0/1:27,9:33:36:0.250:2	./.	./.	./.	./.
chr6	144743015	rs114750149	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,35:31:79:0.443:2	./.	./.	./.
chr6	144744694	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,25:32:73:0.342:2	0/1:17,27:32:44:0.614:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	144758799	rs4895642	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:40,29:33:69:0.420:2	0/1:10,12:32:22:0.545:2	./.	0/1:24,32:33:56:0.571:2	./.	0/1:44,24:32:68:0.353:2	./.	./.	./.	0/1:39,39:33:78:0.500:2	0/1:39,45:33:84:0.536:2
chr6	144811252	rs185090144	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,15:33:28:0.536:2	./.	./.	./.	./.	./.	./.	./.
chr6	144852201	rs12204734	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:71,52:31:123:0.423:2	0/1:51,29:32:80:0.363:2	./.	0/1:106,56:31:162:0.346:2	0/1:60,35:32:95:0.368:2	0/1:4,118:31:122:0.967:2	./.	0/1:89,67:31:156:0.429:2	./.	0/1:69,45:32:114:0.395:2	./.
chr6	144852338	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:33:50:0.080:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	144869785	rs1534443	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,24:34:66:0.364:2	0/1:16,16:33:32:0.500:2	./.	0/1:52,37:33:89:0.416:2	0/1:0,69:32:69:1.00:2	0/1:0,71:32:71:1.00:2	./.	0/1:30,37:33:67:0.552:2	./.	0/1:37,28:33:65:0.431:2	./.
chr6	144878337	rs2293536	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,34:32:72:0.472:2	./.	./.	./.	./.	./.	./.
chr6	144878343	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:34:112:0.036:2	./.	./.
chr6	144904655	rs17793810	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,6:31:20:0.300:2	0/1:76,59:31:135:0.437:2	./.	./.	./.	0/1:104,88:32:193:0.458:2	./.	./.	./.
chr6	144999679	rs142932212	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,28:32:60:0.467:2	./.	./.	./.
chr6	145051594	rs4305737	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:31:18:0.500:2	./.	./.	./.	./.	0/1:5,5:31:10:0.500:2	0/1:2,3:31:5:0.600:2	./.
chr6	145093052	rs80110270	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:30:5:0.600:2	./.	./.	./.	./.	./.	./.	./.
chr6	145103215	rs10499236	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,73:32:172:0.424:2	./.	./.	./.	./.	./.	./.	./.
chr6	145167978	rs9403617	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,53:32:122:0.434:2	0/1:60,46:31:106:0.434:2	0/1:80,56:31:136:0.412:2	./.	./.	./.	./.	./.
chr6	145822992	rs380883	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,15:32:35:0.429:2	0/1:14,10:32:24:0.417:2	./.	0/1:0,39:33:39:1.00:2	0/1:1,16:31:17:0.941:2	0/1:16,17:31:33:0.515:2	0/1:20,7:32:27:0.259:2	0/1:14,26:33:40:0.650:2	0/1:23,20:32:43:0.465:2	0/1:25,16:33:42:0.390:2	./.
chr6	145823642	rs370653	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,13:32:30:0.448:2	0/1:5,8:32:13:0.615:2	./.	0/1:0,31:30:31:1.00:2	0/1:26,10:32:36:0.278:2	0/1:19,24:31:43:0.558:2	0/1:24,20:32:44:0.455:2	0/1:11,15:31:26:0.577:2	0/1:29,24:32:54:0.453:2	0/1:12,21:31:33:0.636:2	./.
chr6	146007332	rs35230590	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,53:31:109:0.486:2	0/1:45,27:30:72:0.375:2	./.	./.	./.	0/1:56,87:31:143:0.608:2	./.	./.	0/1:94,78:32:172:0.453:2	./.	0/1:79,72:32:151:0.477:2
chr6	146056342	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,4:28:15:0.267:2	./.	./.	./.
chr6	146125535	rs35477513	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,18:33:42:0.429:2	./.	./.	./.	./.	./.	./.	./.
chr6	146125743	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:33:101:0.040:2	./.	./.	./.	./.
chr6	146125793	rs3811102	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,39:32:82:0.476:2	0/1:21,33:31:54:0.611:2	0/1:1,7:32:8:0.875:2	0/1:2,120:31:122:0.984:2	0/1:32,32:31:64:0.500:2	0/1:54,53:31:108:0.495:2	0/1:47,26:31:73:0.356:2	0/1:2,96:31:98:0.980:2	0/1:62,56:32:118:0.475:2	0/1:29,39:31:68:0.574:2	./.
chr6	146126419	rs9373475	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:102,69:33:171:0.404:2	0/1:69,53:32:122:0.434:2	0/1:19,5:31:24:0.208:2	0/1:1,190:31:191:0.995:2	0/1:104,94:31:198:0.475:2	0/1:116,78:30:194:0.402:2	0/1:104,69:31:173:0.399:2	0/1:1,186:32:187:0.995:2	0/1:111,79:32:190:0.416:2	0/1:96,76:32:172:0.442:2	./.
chr6	146126667	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,30:32:48:0.625:2	./.	./.	./.	./.	./.	./.
chr6	146207563	rs1062067	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:93,71:30:164:0.433:2	0/1:47,45:30:92:0.489:2	0/1:17,10:30:27:0.370:2	0/1:1,142:30:143:0.993:2	0/1:78,30:30:108:0.278:2	0/1:110,52:29:162:0.321:2	0/1:78,40:30:118:0.339:2	0/1:91,77:29:168:0.458:2	0/1:107,70:31:177:0.395:2	0/1:95,57:31:152:0.375:2	./.
chr6	146234644	rs9497426	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,19:31:48:0.396:2	0/1:7,13:31:20:0.650:2	0/1:6,3:31:9:0.333:2	0/1:30,19:30:49:0.388:2	0/1:15,10:30:25:0.400:2	0/1:0,45:31:45:1.00:2	0/1:0,33:31:33:1.00:2	0/1:32,18:32:50:0.360:2	0/1:23,29:32:52:0.558:2	0/1:24,23:31:47:0.489:2	0/1:0,69:31:69:1.00:2
chr6	146264452	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:33:127:0.031:2
chr6	146264573	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,5:29:115:0.043:2	./.	./.	./.	./.
chr6	146755140	rs2942	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,9:28:25:0.360:2	0/1:14,8:31:22:0.364:2	0/1:0,3:31:3:1.00:2	0/1:15,13:30:28:0.464:2	0/1:17,8:29:25:0.320:2	0/1:11,14:29:25:0.560:2	0/1:1,17:30:18:0.944:2	0/1:0,19:31:19:1.00:2	0/1:13,11:31:24:0.458:2	0/1:11,7:30:18:0.389:2	0/1:0,32:30:32:1.00:2
chr6	146755324	rs6923492	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,8:32:32:0.250:2	0/1:14,12:32:26:0.462:2	0/1:2,5:30:7:0.714:2	0/1:24,10:29:34:0.294:2	0/1:18,9:30:27:0.333:2	0/1:19,21:31:40:0.525:2	0/1:0,22:32:22:1.00:2	0/1:0,28:31:28:1.00:2	0/1:19,4:34:23:0.174:2	0/1:26,7:30:33:0.212:2	0/1:0,8:32:8:1.00:2
chr6	146755437	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:32:131:0.031:2	./.	./.	./.
chr6	146755515	rs6923864	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,10:32:31:0.323:2	0/1:14,9:31:23:0.391:2	0/1:5,5:33:10:0.500:2	0/1:39,21:32:60:0.350:2	0/1:36,21:29:57:0.368:2	0/1:26,22:31:48:0.458:2	0/1:1,30:31:31:0.968:2	0/1:0,38:31:38:1.00:2	0/1:20,14:33:34:0.412:2	0/1:17,15:27:32:0.469:2	./.
chr6	146755553	rs150389935	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,3:31:18:0.167:2	./.	./.	./.	./.	./.	./.
chr6	146755560	rs1047006	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:10,4:28:14:0.286:2	./.	./.	./.	./.	0/1:0,4:27:4:1.00:2	0/1:7,5:27:12:0.417:2	./.	0/1:11,6:27:17:0.353:2	0/1:0,6:28:6:1.00:2
chr6	146755842	rs9373491	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,4:30:9:0.444:2	0/1:5,4:33:9:0.444:2	./.	0/1:4,7:32:11:0.636:2	0/1:2,5:32:7:0.714:2	0/1:1,5:32:6:0.833:2	0/1:0,7:29:7:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,4:33:4:1.00:2	0/1:2,4:31:6:0.667:2	0/1:0,8:34:8:1.00:2
chr6	146975339	rs7747387	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,43:32:112:0.384:2	./.	./.	./.	./.	./.	./.
chr6	146993445	rs9497606	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:34:5:0.600:2	0/1:24,23:32:47:0.489:2	./.	./.	0/1:20,16:33:37:0.444:2	./.	0/1:33,29:33:62:0.468:2	0/1:21,20:33:41:0.488:2	0/1:26,24:33:50:0.480:2
chr6	146993573	rs73571870	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,10:31:22:0.455:2	./.	./.	./.	./.	./.	./.
chr6	146997491	rs201516035	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,38:31:60:0.633:2	./.	./.	./.	./.	./.	./.
chr6	147047282	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:34:115:0.035:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	147047296	rs78851618	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,108:32:110:0.982:2	0/1:0,63:32:63:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	147049868	rs3747756	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:28:3:1.00:2	./.	./.	./.	0/1:23,20:31:43:0.465:2	0/1:25,29:31:54:0.537:2	0/1:29,21:32:50:0.420:2	0/1:16,15:31:31:0.484:2	./.
chr6	147067093	rs9647637	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,30:30:31:1.00:2	./.	0/1:13,10:26:23:0.435:2	./.	./.	0/1:11,13:30:24:0.542:2
chr6	147073700	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,4:31:34:0.118:2	./.	./.	./.	./.
chr6	147073705	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,4:32:32:0.125:2	./.	./.	./.	./.
chr6	147106841	rs259391	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,71:33:71:1.00:2	0/1:1,36:32:37:0.973:2	./.	0/1:20,11:33:32:0.355:2	./.	0/1:24,31:33:55:0.564:2	0/1:27,20:33:47:0.426:2	0/1:24,40:31:64:0.625:2
chr6	147128582	rs202183015	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,5:30:129:0.039:2	./.	0/1:113,7:32:120:0.058:2	./.
chr6	147128614	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:32:100:0.040:2	./.
chr6	147136212	rs1052444	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:32:14:0.500:2	./.	./.	0/1:8,101:31:109:0.927:2	0/1:44,35:31:79:0.443:2	0/1:5,83:32:88:0.943:2	./.	0/1:56,63:32:119:0.529:2	0/1:66,81:32:147:0.551:2
chr6	147136230	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:32:107:0.037:2	./.
chr6	147136244	rs259370	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:31:10:0.400:2	0/1:56,39:31:95:0.411:2	0/1:28,20:30:48:0.417:2	0/1:5,70:30:75:0.933:2	0/1:2,56:29:58:0.966:2	0/1:3,58:30:61:0.951:2	0/1:52,30:32:82:0.366:2	0/1:40,44:30:84:0.524:2	0/1:0,97:30:97:1.00:2
chr6	147635040	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:33:109:0.037:2	./.	./.	./.	./.	./.
chr6	147635385	rs1039083	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:32:6:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,58:32:58:1.00:2	0/1:33,33:32:66:0.500:2	0/1:1,68:32:69:0.986:2	0/1:50,41:33:91:0.451:2	0/1:1,54:32:55:0.982:2	0/1:61,33:32:94:0.351:2
chr6	147635413	rs1039084	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:34:5:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,40:33:40:1.00:2	0/1:18,29:33:47:0.617:2	0/1:28,23:32:51:0.451:2	0/1:0,61:33:61:1.00:2	0/1:44,38:34:82:0.463:2	0/1:1,47:33:48:0.979:2	0/1:52,34:33:86:0.395:2
chr6	147635709	rs146162057	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,32:28:52:0.615:2	./.	./.	./.	./.
chr6	147680359	rs9390459	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,41:32:92:0.446:2	0/1:34,25:32:59:0.424:2	0/1:0,7:33:7:1.00:2	0/1:0,84:32:84:1.00:2	0/1:2,77:32:79:0.975:2	0/1:64,57:32:121:0.471:2	0/1:46,28:33:74:0.378:2	0/1:0,98:32:98:1.00:2	0/1:39,60:33:99:0.606:2	0/1:2,79:32:81:0.975:2	0/1:36,47:31:83:0.566:2
chr6	147830073	rs66812182	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:28:10:0.400:2	0/1:76,52:32:129:0.406:2	./.	0/1:1,97:31:98:0.990:2	./.	0/1:5,113:31:118:0.958:2	0/1:75,43:32:119:0.364:2	./.	./.
chr6	147830212	rs71547193	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,10:32:21:0.476:2	./.	./.	./.	./.	./.	./.
chr6	148792617	rs1883625	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,76:32:170:0.447:2	0/1:66,61:33:127:0.480:2	0/1:97,91:31:188:0.484:2
chr6	148840903	rs34493383	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:32:8:0.500:2	./.	./.	./.	./.
chr6	148841011	rs13196292	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	0/1:0,5:31:5:1.00:2	./.	./.
chr6	148854984	rs2294787	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,20:32:47:0.426:2
chr6	148865257	rs208696	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,23:29:41:0.561:2	0/1:10,9:27:19:0.474:2	./.	0/1:23,23:30:46:0.500:2	0/1:1,37:30:38:0.974:2	0/1:0,36:29:36:1.00:2	./.	0/1:0,53:29:53:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,44:30:44:1.00:2	./.
chr6	149699881	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:32:166:0.024:2	./.	./.	./.	./.
chr6	149700491	rs3734296	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,17:28:37:0.459:2	./.	./.	./.	./.	./.	./.
chr6	149721690	rs237025	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,33:31:80:0.413:2	0/1:2,61:31:63:0.968:2	0/1:29,31:31:60:0.517:2	./.	./.	0/1:68,42:33:110:0.382:2	0/1:0,64:32:64:1.00:2	./.
chr6	149721965	rs237024	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,46:33:98:0.469:2	0/1:0,56:32:56:1.00:2	0/1:61,38:32:99:0.384:2	./.	./.	0/1:49,50:33:99:0.505:2	0/1:0,85:33:85:1.00:2	./.
chr6	149722040	rs237023	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:32:55:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,85:31:85:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,82:31:82:1.00:2
chr6	149722189	rs9498344	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,34:32:75:0.453:2	0/1:18,15:32:33:0.455:2	0/1:23,28:31:51:0.549:2	./.	./.	0/1:24,45:33:69:0.652:2	0/1:34,27:33:61:0.443:2	./.
chr6	149730846	rs652921	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,35:31:64:0.547:2	./.	./.	./.	./.	./.	./.
chr6	149783095	rs61997220	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,14:30:31:0.452:2	./.	./.	./.	./.	0/1:11,19:33:30:0.633:2	./.
chr6	149795522	rs7747948	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:34:3:0.667:2	./.	0/1:10,7:32:17:0.412:2	./.	./.	./.	0/1:2,3:33:5:0.600:2	./.
chr6	149856779	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,6:30:94:0.064:2	./.	./.	./.
chr6	149856797	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,6:32:95:0.063:2	./.	./.	./.
chr6	149862538	rs34870012	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,13:30:23:0.565:2	./.	./.	./.	./.	./.	./.	./.
chr6	149903597	rs1137086	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,54:32:104:0.519:2	./.	0/1:56,48:33:104:0.462:2	0/1:57,76:32:133:0.571:2	./.	./.	./.
chr6	149919466	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,24:31:50:0.480:2	./.	./.	./.
chr6	149953981	rs9800580	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,8:30:24:0.333:2	./.	0/1:86,56:32:142:0.394:2	0/1:108,71:32:179:0.397:2	0/1:79,50:32:129:0.388:2	./.	0/1:101,81:33:182:0.445:2	0/1:75,50:32:125:0.400:2	./.
chr6	149983216	rs3924871	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,10:32:13:0.769:2	./.	0/1:40,30:31:70:0.429:2	0/1:53,35:31:88:0.398:2	0/1:41,46:31:87:0.529:2	./.	0/1:52,52:33:104:0.500:2	0/1:44,32:32:76:0.421:2	./.
chr6	149997767	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:34:77:0.052:2	./.	./.
chr6	150004779	rs3798761	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:29:5:0.800:2	./.	0/1:56,34:28:90:0.378:2	0/1:58,56:28:114:0.491:2	0/1:42,30:29:72:0.417:2	./.	0/1:81,55:29:136:0.404:2	0/1:48,48:30:96:0.500:2	./.
chr6	150005250	rs56246065	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,5:29:16:0.313:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	150016315	rs147326739	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,8:31:36:0.222:2	./.	./.	./.	./.
chr6	150023044	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:33:199:0.020:2	./.	./.	./.
chr6	150064811	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	150067675	rs10872646	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:32:7:0.714:2	./.	./.	0/1:38,28:32:67:0.424:2	0/1:49,28:33:77:0.364:2	./.	0/1:27,28:33:55:0.509:2	0/1:26,33:31:59:0.559:2	./.
chr6	150114745	rs4816	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,3:30:14:0.214:2	./.	./.	0/1:54,34:31:88:0.386:2	0/1:35,21:32:56:0.375:2	./.	0/1:58,53:33:111:0.477:2	0/1:46,30:32:76:0.395:2	./.
chr6	150157345	rs72995588	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,67:30:145:0.462:2	0/1:44,47:31:91:0.516:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	150209717	rs2342767	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,16:32:41:0.390:2	0/1:10,14:32:24:0.583:2	0/1:0,5:34:5:1.00:2	0/1:24,26:34:50:0.520:2	0/1:20,25:33:45:0.556:2	0/1:20,11:32:31:0.355:2	0/1:0,41:32:41:1.00:2	0/1:40,37:32:77:0.481:2	0/1:25,17:32:42:0.405:2	0/1:21,16:32:37:0.432:2	./.
chr6	150210681	rs9371533	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:98,57:31:155:0.368:2	0/1:72,80:31:152:0.526:2	0/1:21,10:31:31:0.323:2	0/1:96,66:31:162:0.407:2	0/1:98,76:31:175:0.437:2	0/1:91,67:31:158:0.424:2	0/1:0,136:31:136:1.00:2	0/1:101,76:31:177:0.429:2	0/1:134,41:32:175:0.234:2	0/1:80,63:32:143:0.441:2	./.
chr6	150210685	rs9383921	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:94,54:31:148:0.365:2	0/1:72,75:31:147:0.510:2	0/1:21,9:30:30:0.300:2	0/1:96,70:30:167:0.422:2	0/1:96,80:31:176:0.455:2	0/1:90,70:31:160:0.438:2	0/1:1,141:31:142:0.993:2	0/1:103,78:31:181:0.431:2	0/1:135,41:31:176:0.233:2	0/1:74,65:31:139:0.468:2	./.
chr6	150210723	rs6925151	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:93,54:32:147:0.367:2	0/1:66,65:32:131:0.496:2	0/1:20,3:29:23:0.130:2	./.	./.	0/1:109,76:31:185:0.411:2	0/1:103,65:32:168:0.387:2	./.	0/1:128,39:33:167:0.234:2	0/1:80,77:32:157:0.490:2	./.
chr6	150211100	rs3798763	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:68,57:32:125:0.456:2	0/1:32,40:32:72:0.556:2	0/1:8,10:32:18:0.556:2	./.	./.	0/1:65,76:32:141:0.539:2	0/1:61,47:32:108:0.435:2	./.	0/1:76,75:33:151:0.497:2	0/1:59,58:32:117:0.496:2	./.
chr6	150211123	rs2151910	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,120:32:120:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,129:31:129:1.00:2	0/1:0,95:31:95:1.00:2	0/1:0,132:31:132:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,115:31:115:1.00:2	0/1:1,149:32:150:0.993:2	0/1:59,54:31:113:0.478:2	0/1:58,67:32:125:0.536:2
chr6	150212003	rs9383583	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,45:31:81:0.556:2	0/1:37,35:31:72:0.486:2	./.	0/1:48,52:31:100:0.520:2	0/1:40,42:32:82:0.512:2	./.	./.	./.
chr6	150239330	rs17079029	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,84:31:191:0.440:2	0/1:84,110:31:194:0.567:2	./.	0/1:104,89:31:193:0.461:2	0/1:117,76:31:193:0.394:2	./.	./.	./.
chr6	150239484	rs4870111	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,29:31:69:0.420:2	./.	./.	./.	0/1:86,87:32:173:0.503:2	./.	./.	./.	./.
chr6	150240697	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:174,23:32:197:0.117:2	0/1:185,14:33:199:0.070:2	0/1:45,6:32:51:0.118:2	0/1:184,15:32:199:0.075:2	0/1:178,19:30:197:0.096:2	0/1:168,28:31:196:0.143:2	0/1:183,12:31:195:0.062:2	0/1:172,26:31:198:0.131:2	0/1:170,24:32:194:0.124:2	0/1:170,27:32:197:0.137:2	0/1:182,13:32:195:0.067:2
chr6	150240829	rs9397449	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:125,66:32:191:0.346:2	0/1:147,49:31:196:0.250:2	./.	0/1:132,64:32:196:0.327:2	0/1:137,59:33:196:0.301:2	./.	./.	./.
chr6	150240835	rs73782146	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:141,44:30:185:0.238:2	0/1:142,26:32:168:0.155:2	0/1:98,17:31:115:0.148:2	0/1:164,30:31:194:0.155:2	0/1:156,40:31:196:0.204:2	0/1:160,36:30:196:0.184:2	0/1:158,39:31:197:0.198:2	0/1:154,42:30:196:0.214:2	0/1:152,45:31:197:0.228:2	0/1:151,40:31:191:0.209:2	0/1:159,34:30:193:0.176:2
chr6	150263287	rs200438471	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,7:16:25:0.280:2	./.	./.	./.	./.	./.	./.	./.	0/1:20,6:19:26:0.231:2	0/1:26,6:20:32:0.188:2	./.
chr6	150266578	rs149454018	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:162,32:30:194:0.165:2	0/1:163,32:29:195:0.164:2	0/1:93,23:30:116:0.198:2	0/1:170,24:30:194:0.124:2	0/1:161,34:30:196:0.174:2	0/1:184,14:29:198:0.071:2	0/1:163,33:30:196:0.168:2	0/1:177,19:26:196:0.097:2	0/1:177,16:27:193:0.083:2	0/1:189,9:27:198:0.045:2	0/1:168,26:31:194:0.134:2
chr6	150267527	rs2282235	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:7,124:32:131:0.947:2	0/1:6,68:32:74:0.919:2	0/1:9,9:32:18:0.500:2	0/1:16,143:32:159:0.899:2	./.	./.	0/1:121,57:33:178:0.320:2	./.	0/1:91,74:33:165:0.448:2	0/1:80,71:32:151:0.470:2	0/1:101,76:33:177:0.429:2
chr6	150267593	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,66:31:194:0.340:2	./.	./.	./.	./.	./.
chr6	150267598	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,68:31:194:0.351:2	./.	./.	./.	./.	./.
chr6	150268533	rs146872141	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,40:32:193:0.207:2	./.	./.	./.	0/1:136,45:32:181:0.249:2
chr6	150285209	rs61742437	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:38,20:32:58:0.345:2	0/1:17,17:31:34:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:61,24:31:85:0.282:2	./.
chr6	150289860	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:191,4:33:195:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr6	150289889	rs199982303	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,6:31:179:0.034:2
chr6	150289913	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,4:33:194:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr6	150341298	rs201048549	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,39:31:198:0.198:2	./.	./.	./.	0/1:153,30:32:183:0.164:2
chr6	150342225	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,23:32:194:0.119:2	./.	./.	./.	./.	./.
chr6	150342232	rs61730071	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:90,83:32:174:0.480:2	0/1:69,61:31:130:0.469:2	0/1:30,14:31:44:0.318:2	0/1:97,83:31:180:0.461:2	0/1:95,97:31:192:0.505:2	./.	0/1:93,99:32:192:0.516:2	./.	./.	./.	0/1:93,100:32:193:0.518:2
chr6	150342243	rs140013602	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,76:32:165:0.461:2	0/1:61,65:32:126:0.516:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	150342245	rs368287368	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,27:30:185:0.146:2	./.	./.	./.	./.	./.
chr6	150342303	rs201609351	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:133,12:33:145:0.083:2	./.	./.	0/1:150,10:34:160:0.063:2	./.	./.	./.	./.	0/1:132,5:34:137:0.036:2	./.	0/1:138,7:32:145:0.048:2
chr6	150343148	rs78563624	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:131,23:32:154:0.149:2	0/1:73,20:31:93:0.215:2	0/1:13,3:31:16:0.188:2	0/1:118,27:32:145:0.186:2	0/1:111,14:31:125:0.112:2	./.	0/1:144,17:32:161:0.106:2	./.	./.	./.	0/1:127,34:31:161:0.211:2
chr6	150343211	rs202055124	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,154:29:159:0.969:2	0/1:1,109:29:110:0.991:2	0/1:0,16:30:16:1.00:2	0/1:0,187:29:188:1.00:2	0/1:5,158:28:163:0.969:2	0/1:2,180:29:182:0.989:2	0/1:10,169:28:179:0.944:2	0/1:2,182:29:184:0.989:2	0/1:3,185:30:188:0.984:2	0/1:1,188:29:189:0.995:2	0/1:1,178:29:179:0.994:2
chr6	150343262	rs371585522	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,8:30:195:0.041:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,5:33:191:0.026:2
chr6	150346532	rs1543547	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,24:32:43:0.558:2	0/1:8,11:33:19:0.579:2	0/1:3,3:32:6:0.500:2	0/1:24,18:31:42:0.429:2	0/1:27,20:31:47:0.426:2	./.	0/1:35,22:32:57:0.386:2	0/1:74,4:32:78:0.051:2	./.	./.	0/1:20,15:31:35:0.429:2
chr6	150385741	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:114,4:32:118:0.034:2	./.	0/1:192,5:31:197:0.025:2	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2	0/1:179,8:33:187:0.043:2	0/1:175,5:33:180:0.028:2
chr6	150390118	rs113233347	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,16:30:34:0.471:2	0/1:17,11:30:28:0.393:2	./.	./.	0/1:6,15:29:21:0.714:2	0/1:20,32:30:52:0.615:2	./.	0/1:26,31:29:57:0.544:2	0/1:25,26:29:51:0.510:2	0/1:16,15:29:31:0.484:2	./.
chr6	150464557	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,3:32:45:0.067:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	150464585	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,7:19:57:0.125:2	./.
chr6	150690192	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:177,4:32:181:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr6	150715311	rs377381152	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:32:102:0.039:2
chr6	151121915	rs2073061	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:33,21:32:54:0.389:2	0/1:11,8:30:19:0.421:2	./.	0/1:0,67:32:67:1.00:2	./.	0/1:0,59:31:59:1.00:2	./.	./.	./.	0/1:37,23:31:60:0.383:2	./.
chr6	151121958	rs144848429	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,15:31:33:0.455:2	./.	./.	./.
chr6	151152035	rs41289347	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,50:28:51:0.980:2	0/1:1,23:29:24:0.958:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	151152059	rs2073065	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,25:31:51:0.490:2	./.	0/1:29,17:31:46:0.370:2	./.	./.
chr6	151152250	rs148178393	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,23:32:38:0.605:2	./.	./.	./.	./.	./.	./.	./.
chr6	151152257	rs926624	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,19:33:35:0.543:2	0/1:17,29:32:46:0.630:2	0/1:21,29:33:50:0.580:2	0/1:33,28:33:61:0.459:2	./.	./.	0/1:18,28:33:46:0.609:2
chr6	151152656	rs803411	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,77:32:77:1.00:2	0/1:0,53:32:53:1.00:2	0/1:11,5:33:16:0.313:2	./.	0/1:73,50:32:124:0.407:2	0/1:79,54:32:133:0.406:2	0/1:0,114:33:114:1.00:2	0/1:0,133:32:133:1.00:2	0/1:0,124:33:124:1.00:2	0/1:37,48:32:85:0.565:2	0/1:76,46:33:122:0.377:2
chr6	151161018	rs17348890	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,21:32:59:0.356:2	./.	0/1:39,38:33:77:0.494:2	./.	./.
chr6	151161086	rs17080410	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,89:30:92:0.967:2	0/1:0,57:29:57:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	151161116	rs61742396	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,91:31:95:0.958:2	0/1:0,70:31:70:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	151161413	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:31:71:0.056:2	./.	./.	./.
chr6	151161825	rs803400	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,36:31:76:0.474:2	./.
chr6	151161836	rs17054318	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,56:29:57:1.00:2	0/1:1,41:29:42:0.976:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	151198895	rs2073064	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,10:29:21:0.476:2	./.	./.	./.	./.	./.	./.	0/1:42,24:29:66:0.364:2	./.
chr6	151336739	rs509474	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,67:29:149:0.450:2	0/1:52,36:29:89:0.409:2	0/1:0,25:29:25:1.00:2	0/1:100,87:29:187:0.465:2	0/1:0,178:29:178:1.00:2	./.	0/1:99,93:29:192:0.484:2	0/1:98,91:30:189:0.481:2	0/1:0,153:30:153:1.00:2	0/1:0,141:29:141:1.00:2	0/1:93,69:29:162:0.426:2
chr6	151362942	rs1983750	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,44:33:118:0.373:2	0/1:36,27:32:63:0.429:2	0/1:5,3:32:8:0.375:2	0/1:0,126:33:126:1.00:2	0/1:60,46:33:106:0.434:2	0/1:1,135:32:136:0.993:2	0/1:50,66:33:116:0.569:2	0/1:90,65:33:155:0.419:2	0/1:79,88:34:167:0.527:2	0/1:79,62:34:141:0.440:2	0/1:0,122:33:122:1.00:2
chr6	151627034	rs2294792	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,20:32:39:0.513:2	0/1:13,21:31:34:0.618:2	./.	0/1:19,12:32:31:0.387:2	0/1:0,28:31:28:1.00:2	0/1:20,18:30:38:0.474:2	0/1:21,15:30:36:0.417:2	0/1:24,24:30:48:0.500:2	./.	0/1:19,24:30:43:0.558:2	0/1:0,41:32:41:1.00:2
chr6	151669875	rs10872670	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,4:27:17:0.235:2	0/1:10,7:27:17:0.412:2	0/1:0,2:27:2:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,10:27:10:1.00:2	0/1:22,13:28:35:0.371:2	0/1:18,18:27:36:0.500:2	0/1:1,36:28:39:0.973:2	0/1:0,33:30:33:1.00:2	0/1:0,26:27:26:1.00:2	0/1:0,33:27:33:1.00:2
chr6	151670172	rs3734799	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,5:34:10:0.500:2	0/1:7,5:34:12:0.417:2	./.	0/1:0,12:34:12:1.00:2	0/1:0,13:32:13:1.00:2	0/1:13,9:32:22:0.409:2	0/1:11,7:30:18:0.389:2	0/1:0,25:33:25:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,17:32:17:1.00:2
chr6	151670690	rs35341741	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,26:31:52:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr6	151670897	rs900654	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,13:30:26:0.500:2	0/1:16,17:29:33:0.515:2	0/1:0,2:31:2:1.00:2	0/1:0,32:29:32:1.00:2	0/1:1,29:28:30:0.967:2	0/1:6,18:30:24:0.750:2	0/1:11,15:31:26:0.577:2	0/1:2,42:29:44:0.955:2	0/1:0,33:30:33:1.00:2	0/1:0,17:31:17:1.00:2	0/1:1,33:30:34:0.971:2
chr6	151672285	rs13212161	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,5:31:7:0.714:2	0/1:46,41:32:87:0.471:2	./.	0/1:65,4:35:69:0.058:2	./.	./.	./.	./.	./.
chr6	151672573	rs61757549	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:30:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	151673074	rs41289375	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,16:29:34:0.471:2	0/1:38,18:30:56:0.321:2	./.	./.	./.	./.
chr6	151673589	rs12201388	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,5:31:9:0.556:2	0/1:45,25:30:70:0.357:2	./.	./.	./.	./.	./.	./.	./.
chr6	151674270	rs34713284	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,15:31:15:1.00:2	0/1:21,46:32:67:0.687:2	./.	./.	./.	./.	./.	./.	./.
chr6	151674326	rs3823310	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,23:32:49:0.469:2	0/1:21,15:29:36:0.417:2	0/1:7,3:31:10:0.300:2	0/1:31,20:32:51:0.392:2	0/1:2,61:31:63:0.968:2	0/1:33,19:32:52:0.365:2	0/1:34,29:30:64:0.460:2	0/1:0,53:30:53:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,61:30:61:1.00:2
chr6	151686905	rs11155787	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:94,82:33:176:0.466:2	0/1:67,65:33:132:0.492:2	./.	0/1:107,81:32:188:0.431:2	0/1:0,166:31:166:1.00:2	0/1:105,90:31:195:0.462:2	0/1:111,84:32:195:0.431:2	0/1:4,187:32:191:0.979:2	0/1:0,191:33:191:1.00:2	0/1:1,187:32:188:0.995:2	0/1:0,182:32:182:1.00:2
chr6	151757661	rs370863743	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,35:31:75:0.467:2	./.	./.	./.	./.	./.
chr6	151766552	rs3734800	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,20:32:57:0.351:2	0/1:22,19:32:41:0.463:2	./.	./.	./.	0/1:3,60:30:63:0.952:2	./.	./.	./.	./.	./.
chr6	151766822	rs11550103	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,5:28:12:0.417:2	0/1:48,41:31:89:0.461:2	./.	./.	./.	./.	./.	0/1:50,37:31:87:0.425:2	./.
chr6	151789709	rs35989216	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,40:32:89:0.449:2	./.	./.	./.	./.	./.	./.
chr6	151789868	rs35972078	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:32:10:0.500:2	0/1:42,33:31:75:0.440:2	./.	./.	./.	./.	./.	0/1:35,21:30:57:0.375:2	./.
chr6	151789912	rs9397054	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,24:31:53:0.453:2	0/1:25,19:31:44:0.432:2	./.	./.	./.	0/1:2,66:30:69:0.971:2	./.	./.	./.	./.	./.
chr6	151857464	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,13:32:32:0.406:2
chr6	151859314	rs4870034	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,51:33:51:1.00:2	0/1:0,21:32:21:1.00:2	0/1:7,3:33:10:0.300:2	./.	0/1:3,31:32:34:0.912:2	0/1:35,25:32:60:0.417:2	0/1:28,19:33:47:0.404:2	0/1:0,73:33:74:1.00:2	0/1:43,46:34:89:0.517:2	0/1:1,69:34:70:0.986:2	0/1:0,92:33:92:1.00:2
chr6	151869617	rs192947987	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,31:30:75:0.413:2	./.	./.	./.
chr6	151894505	rs953767	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,76:32:77:1.00:2	0/1:0,73:32:73:1.00:2	./.	./.	0/1:0,96:32:96:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,98:32:98:1.00:2	0/1:1,104:32:105:0.990:2	0/1:70,49:33:119:0.412:2	0/1:0,100:32:100:1.00:2	0/1:0,96:32:96:1.00:2
chr6	151907125	rs367555056	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,14:31:41:0.341:2	./.	./.	./.	./.	./.	./.
chr6	151936677	rs6929137	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,27:30:70:0.386:2	0/1:40,15:30:55:0.273:2	./.	./.	./.	0/1:53,48:32:101:0.475:2	0/1:44,39:31:84:0.470:2	./.
chr6	151939181	rs3734804	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,23:31:23:1.00:2	0/1:2,179:31:181:0.989:2	0/1:101,83:31:184:0.451:2	0/1:95,85:31:180:0.472:2	0/1:109,83:31:192:0.432:2	0/1:193,4:33:197:0.020:2	0/1:114,82:32:196:0.418:2	0/1:89,61:31:150:0.407:2	0/1:0,155:31:155:1.00:2
chr6	152129077	rs2077647	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,23:31:50:0.460:2	0/1:13,14:30:27:0.519:2	0/1:2,4:30:6:0.667:2	0/1:46,49:30:95:0.516:2	0/1:47,66:30:113:0.584:2	0/1:38,35:30:73:0.479:2	./.	./.	./.	0/1:0,42:30:42:1.00:2	0/1:19,18:30:37:0.486:2
chr6	152129308	rs746432	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:30:7:0.429:2	./.
chr6	152130253	rs201212952	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,31:28:76:0.413:2	./.	./.	./.	./.	./.	./.
chr6	152201875	rs4986934	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:32:30:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,5:34:5:1.00:2	0/1:11,22:33:33:0.667:2	0/1:0,44:32:44:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,36:33:36:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,40:32:40:1.00:2
chr6	152265356	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,21:28:47:0.447:2	./.
chr6	152265522	rs1801132	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,29:32:77:0.377:2	0/1:25,28:32:53:0.528:2	0/1:6,10:32:16:0.625:2	0/1:69,49:32:118:0.415:2	0/1:0,94:32:95:1.00:2	0/1:0,99:33:100:1.00:2	0/1:0,122:32:122:1.00:2	0/1:57,49:31:106:0.462:2	./.	0/1:0,104:32:104:1.00:2	0/1:0,72:32:72:1.00:2
chr6	152419874	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:32:56:0.071:2	./.	./.	./.	./.	./.
chr6	152420095	rs2228480	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,23:31:51:0.451:2	./.	./.	./.	./.	./.
chr6	152443744	rs2295190	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,25:31:46:0.543:2	./.	./.	./.	./.	0/1:23,19:31:42:0.452:2	./.
chr6	152443761	rs2295192	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,12:30:29:0.414:2	./.
chr6	152446487	rs2813563	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:29,29:33:58:0.500:2	0/1:15,19:33:34:0.559:2	./.	./.	0/1:15,14:30:29:0.483:2	0/1:28,46:32:74:0.622:2	./.	0/1:41,35:32:76:0.461:2	0/1:42,25:31:67:0.373:2	./.	0/1:32,29:32:61:0.475:2
chr6	152453291	rs35591210	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,70:31:145:0.483:2	0/1:71,44:31:115:0.383:2	./.	./.	./.	0/1:95,74:30:169:0.438:2	./.	0/1:61,61:31:122:0.500:2	0/1:107,56:32:163:0.344:2	./.	./.
chr6	152464839	rs2256135	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,5:28:9:0.556:2	0/1:0,95:33:95:1.00:2	0/1:45,35:32:80:0.438:2	0/1:63,58:33:121:0.479:2	0/1:0,81:33:81:1.00:2	./.	./.	0/1:59,40:33:99:0.404:2	0/1:82,70:32:152:0.461:2
chr6	152466674	rs2747662	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:32:3:1.00:2	0/1:18,31:33:49:0.633:2	0/1:22,13:32:35:0.371:2	0/1:37,22:32:59:0.373:2	0/1:1,30:33:31:0.968:2	./.	./.	./.	./.
chr6	152469188	rs2252755	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:32:14:0.571:2	0/1:6,4:32:10:0.400:2	0/1:6,4:31:10:0.400:2	0/1:0,4:32:5:1.00:2	./.	./.	./.	./.
chr6	152469331	rs2252748	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:33:7:0.429:2	./.	0/1:20,18:32:38:0.474:2	0/1:48,27:32:75:0.360:2	0/1:37,30:32:67:0.448:2	./.	./.	./.	./.
chr6	152470752	rs17082236	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,22:29:65:0.338:2	./.	./.	0/1:50,14:28:64:0.219:2	./.	./.	./.	./.
chr6	152473181	rs910415	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,33:29:73:0.452:2	./.	./.	0/1:59,58:29:118:0.496:2	./.	./.	./.	./.
chr6	152489037	rs997389	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:33:10:1.00:2	./.	0/1:25,31:32:57:0.554:2	0/1:27,26:33:53:0.491:2	./.	0/1:43,33:33:76:0.434:2	./.	0/1:38,24:33:62:0.387:2	./.
chr6	152489038	rs997769	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:29,30:29:59:0.508:2	0/1:20,9:28:29:0.310:2	0/1:0,10:30:10:1.00:2	./.	0/1:24,31:29:55:0.564:2	0/1:27,26:29:53:0.491:2	./.	0/1:38,38:30:76:0.500:2	./.	0/1:0,55:30:55:1.00:2	./.
chr6	152489146	rs186591915	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,29:33:64:0.453:2	./.	./.
chr6	152489294	rs998147	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,22:28:22:1.00:2	0/1:0,12:28:12:1.00:2	./.	0/1:6,4:27:10:0.400:2	0/1:0,15:27:16:1.00:2	0/1:0,25:25:25:1.00:2	./.	0/1:0,34:28:34:1.00:2	./.	0/1:0,30:28:30:1.00:2	./.
chr6	152510429	rs139590550	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,22:33:59:0.373:2	./.	./.
chr6	152529260	rs3798756	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,22:27:48:0.458:2	./.
chr6	152534768	rs34891041	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:113,73:32:186:0.392:2	0/1:46,51:32:97:0.526:2	./.	./.	./.	./.	0/1:92,52:32:144:0.361:2	./.	./.	./.	./.
chr6	152540275	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:31:103:0.039:2	./.	./.
chr6	152540278	rs2147377	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,80:33:80:1.00:2	0/1:0,35:32:35:1.00:2	./.	0/1:0,80:33:81:1.00:2	0/1:0,37:32:37:1.00:2	0/1:2,77:32:79:0.975:2	0/1:0,61:32:61:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,57:33:57:1.00:2	0/1:2,68:33:70:0.971:2
chr6	152545705	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,4:32:82:0.049:2	./.	./.	./.	./.	./.	./.
chr6	152553292	rs191912037	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:30:10:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	152615200	rs12664753	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,32:30:60:0.533:2	0/1:32,35:32:67:0.522:2	./.	0/1:30,37:32:67:0.552:2	0/1:32,29:31:61:0.475:2	./.
chr6	152623182	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,10:32:110:0.091:2	./.	./.	./.	./.
chr6	152629631	rs76160752	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,57:34:118:0.483:2	0/1:39,33:33:72:0.458:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	152631934	rs142010074	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,6:31:157:0.038:2	./.	./.	./.	./.	./.
chr6	152647681	rs2306916	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:0,41:32:41:1.00:2	0/1:3,7:31:10:0.700:2	0/1:0,78:32:78:1.00:2	0/1:41,38:31:79:0.481:2	0/1:4,80:31:84:0.952:2	0/1:51,43:31:94:0.457:2	0/1:1,86:31:87:0.989:2	0/1:52,49:32:101:0.485:2	0/1:0,71:31:72:1.00:2	0/1:0,103:31:103:1.00:2
chr6	152650903	rs35085679	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,3:31:9:0.333:2	0/1:41,34:31:75:0.453:2	./.	./.	./.	./.	./.	./.	./.
chr6	152651084	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:33:192:0.021:2	./.	./.	./.	./.
chr6	152651503	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,8:32:81:0.099:2	./.
chr6	152651759	rs3734365	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,12:30:18:0.667:2	./.	./.	./.	./.	./.	./.
chr6	152652034	rs6911096	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,74:30:75:0.987:2	0/1:1,54:31:55:0.982:2	0/1:4,9:30:13:0.692:2	0/1:0,86:30:86:1.00:2	0/1:26,26:30:52:0.500:2	0/1:0,80:29:80:1.00:2	0/1:57,30:30:87:0.345:2	0/1:0,89:30:89:1.00:2	0/1:33,48:31:81:0.593:2	0/1:0,65:30:65:1.00:2	0/1:0,112:30:112:1.00:2
chr6	152652599	rs10499268	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,17:31:27:0.630:2	0/1:95,88:32:184:0.481:2	./.	./.	./.	./.	./.	./.	./.
chr6	152658062	rs117501809	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,42:32:71:0.592:2	./.	./.	./.	./.
chr6	152658141	rs28385621	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:27,14:31:41:0.341:2	0/1:18,7:30:25:0.280:2	./.	0/1:22,11:29:33:0.333:2	./.	./.	./.	./.	./.	./.	./.
chr6	152658142	rs9479297	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,36:33:37:0.973:2	0/1:1,24:33:25:0.960:2	./.	0/1:4,28:32:32:0.875:2	0/1:10,6:34:16:0.375:2	0/1:0,29:31:29:1.00:2	0/1:13,15:33:28:0.536:2	0/1:2,26:32:28:0.929:2	0/1:19,28:33:47:0.596:2	0/1:1,33:33:34:0.971:2	0/1:0,42:33:42:1.00:2
chr6	152660451	rs71575926	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,20:32:49:0.408:2	./.	./.	./.
chr6	152665261	rs4645434	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,22:31:76:0.289:2	0/1:31,27:30:58:0.466:2	0/1:0,7:30:7:1.00:2	0/1:1,71:30:72:0.986:2	0/1:2,66:30:68:0.971:2	0/1:0,66:29:66:1.00:2	0/1:61,42:30:104:0.408:2	0/1:45,39:30:84:0.464:2	0/1:79,61:31:140:0.436:2	0/1:0,59:31:59:1.00:2	0/1:0,97:30:99:1.00:2
chr6	152671379	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:30:116:0.034:2	./.	./.
chr6	152675854	rs9397102	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:100,84:32:184:0.457:2	0/1:60,70:32:130:0.538:2	0/1:0,37:32:37:1.00:2	0/1:0,188:32:188:1.00:2	0/1:2,183:32:186:0.989:2	0/1:1,178:32:179:0.994:2	0/1:99,91:32:190:0.479:2	0/1:108,88:32:196:0.449:2	0/1:98,87:33:186:0.470:2	0/1:0,173:33:173:1.00:2	0/1:0,186:32:186:1.00:2
chr6	152675932	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:31:168:0.024:2	./.	./.	./.	./.	./.
chr6	152683413	rs4407724	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,25:33:69:0.362:2	0/1:28,30:33:58:0.517:2	0/1:0,11:32:11:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,98:32:98:1.00:2	0/1:47,31:32:78:0.397:2	0/1:84,59:32:144:0.413:2	0/1:0,124:32:124:1.00:2	0/1:1,88:31:89:0.989:2	0/1:0,105:32:105:1.00:2
chr6	152694184	rs6913579	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,29:32:62:0.468:2	0/1:6,18:32:24:0.750:2	0/1:0,2:33:2:1.00:2	0/1:0,52:32:52:1.00:2	0/1:19,12:32:31:0.387:2	0/1:1,42:32:43:0.977:2	0/1:18,16:32:34:0.471:2	0/1:24,24:32:48:0.500:2	0/1:38,40:33:78:0.513:2	0/1:0,37:32:37:1.00:2	0/1:0,80:32:80:1.00:2
chr6	152697675	rs117020413	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,16:32:40:0.400:2	0/1:19,9:32:28:0.321:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	152702186	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:30:133:0.030:2
chr6	152708310	rs214950	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:88,76:32:164:0.463:2	0/1:64,47:32:111:0.423:2	0/1:18,7:31:25:0.280:2	./.	./.	./.	./.	./.	0/1:101,82:33:183:0.448:2	./.	./.
chr6	152711429	rs58905396	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,46:32:99:0.465:2	./.	./.	./.
chr6	152765579	rs139524103	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,24:31:46:0.522:2	./.	./.	./.	./.	./.
chr6	152772264	rs214976	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:45,38:33:83:0.458:2	0/1:33,24:30:57:0.421:2	0/1:0,10:31:10:1.00:2	./.	0/1:35,39:32:74:0.527:2	0/1:59,46:32:105:0.438:2	0/1:0,104:33:104:1.00:2	0/1:52,56:33:108:0.519:2	0/1:52,56:32:108:0.519:2	./.	0/1:0,121:33:121:1.00:2
chr6	152774798	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:33:57:0.070:2	./.
chr6	152784621	rs9397509	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,62:28:143:0.434:2	./.	./.	./.	./.	./.
chr6	152831401	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:173,4:35:177:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr6	152832762	rs190921175	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,25:33:47:0.532:2	./.	./.	./.	./.
chr6	153043035	rs17710008	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:87,64:32:151:0.424:2	0/1:83,69:32:152:0.454:2	./.	./.	0/1:73,83:33:156:0.532:2	./.	0/1:91,83:33:174:0.477:2
chr6	153296370	rs7763565	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,61:32:98:0.622:2	0/1:23,29:32:52:0.558:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	153296541	rs2073260	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,132:33:133:0.992:2	0/1:0,87:32:87:1.00:2	0/1:17,9:32:26:0.346:2	0/1:74,68:32:142:0.479:2	0/1:43,46:32:89:0.517:2	0/1:59,36:32:95:0.379:2	0/1:54,51:32:105:0.486:2	0/1:0,121:33:122:1.00:2	0/1:0,153:34:153:1.00:2	0/1:0,111:32:111:1.00:2	0/1:93,72:32:165:0.436:2
chr6	153311116	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,12:32:188:0.064:2	./.	./.	./.	./.	0/1:185,9:32:194:0.046:2
chr6	153312364	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,9:32:115:0.078:2	./.	./.	0/1:107,4:33:111:0.036:2	./.
chr6	153315695	rs3192723	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:68,65:32:133:0.489:2	0/1:36,47:32:83:0.566:2	0/1:0,14:32:14:1.00:2	0/1:184,4:32:188:0.021:2	./.	0/1:86,80:31:166:0.482:2	./.	0/1:93,98:32:191:0.513:2	./.	./.	./.
chr6	153315698	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:165,4:32:169:0.024:2	./.	./.	./.	./.	./.	./.
chr6	153315744	rs57819885	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,49:30:114:0.430:2	./.	./.	./.
chr6	153315921	rs3799133	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:31:4:1.00:2	0/1:0,3:32:3:1.00:2	./.	./.	0/1:0,6:31:6:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,3:31:3:1.00:2	./.	0/1:0,2:32:2:1.00:2	0/1:0,5:31:5:1.00:2
chr6	153316326	rs3734467	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:29:7:1.00:2	./.	./.	0/1:66,32:30:98:0.327:2	./.	0/1:87,35:30:122:0.287:2	./.	./.	./.
chr6	153323594	rs3818123	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,36:31:77:0.468:2	0/1:14,22:31:36:0.611:2	0/1:0,10:32:10:1.00:2	0/1:74,47:32:121:0.388:2	0/1:80,84:31:165:0.512:2	0/1:72,51:31:123:0.415:2	0/1:95,59:32:154:0.383:2	0/1:95,43:32:138:0.312:2	0/1:0,93:32:93:1.00:2	0/1:1,85:32:86:0.988:2	0/1:55,51:31:106:0.481:2
chr6	153323709	rs3818125	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,5:27:15:0.333:2	./.	./.	0/1:12,4:29:17:0.250:2	0/1:3,6:25:9:0.667:2	0/1:6,8:27:14:0.571:2	0/1:8,4:28:12:0.333:2	./.	0/1:0,9:26:9:1.00:2	0/1:0,4:29:4:1.00:2	./.
chr6	153345603	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:33:56:0.071:2	./.	./.	./.
chr6	153365100	rs2295230	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,44:29:107:0.411:2	0/1:62,37:30:99:0.374:2	./.	0/1:0,80:29:81:1.00:2
chr6	153365112	rs41292882	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:39,37:32:76:0.487:2	0/1:17,26:32:43:0.605:2	./.	./.	0/1:43,56:33:99:0.566:2	./.	./.	0/1:47,63:32:110:0.573:2	./.	./.	./.
chr6	154360555	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:32:62:0.065:2	./.	./.	./.	./.	./.
chr6	154360655	rs41292890	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,30:30:73:0.411:2	./.	0/1:41,35:31:76:0.461:2	./.	./.
chr6	154360797	rs1799971	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,40:30:40:1.00:2	0/1:0,22:31:22:1.00:2	./.	0/1:35,21:29:56:0.375:2	./.	0/1:28,36:30:64:0.563:2	./.	0/1:51,38:29:89:0.427:2	./.	./.	./.
chr6	154411284	rs79220505	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,40:29:71:0.563:2	./.	./.	./.
chr6	154414446	rs540825	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,93:32:93:1.00:2	0/1:1,64:32:65:0.985:2	0/1:5,11:31:16:0.688:2	0/1:72,68:31:140:0.486:2	0/1:73,79:31:153:0.520:2	0/1:0,133:31:133:1.00:2	0/1:0,142:32:142:1.00:2	0/1:2,147:32:149:0.987:2	0/1:0,123:33:123:1.00:2	0/1:75,66:32:141:0.468:2	0/1:63,53:32:116:0.457:2
chr6	154414563	rs675026	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:1,30:32:31:0.968:2	0/1:6,5:30:11:0.455:2	0/1:61,51:33:112:0.455:2	0/1:35,38:31:73:0.521:2	0/1:1,54:32:55:0.982:2	0/1:0,61:31:61:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,73:33:73:1.00:2	./.	0/1:46,36:31:82:0.439:2
chr6	154414573	rs562859	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:1,26:32:27:0.963:2	0/1:5,5:31:10:0.500:2	0/1:57,41:32:98:0.418:2	0/1:34,34:32:68:0.500:2	0/1:1,43:32:44:0.977:2	0/1:0,51:32:51:1.00:2	0/1:0,69:32:70:1.00:2	0/1:0,67:33:67:1.00:2	./.	0/1:41,32:31:73:0.438:2
chr6	154428666	rs677830	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,19:28:41:0.463:2	0/1:23,14:28:37:0.378:2	./.	./.	./.	./.	0/1:28,25:31:54:0.472:2	0/1:38,18:30:56:0.321:2
chr6	154428702	rs650245	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,46:30:47:0.979:2	0/1:0,19:29:19:1.00:2	0/1:0,2:31:2:1.00:2	0/1:1,48:29:50:0.980:2	0/1:0,27:29:27:1.00:2	0/1:1,33:29:34:0.971:2	0/1:0,25:28:25:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,49:31:49:1.00:2	0/1:21,28:30:49:0.571:2	0/1:0,61:30:61:1.00:2
chr6	154431565	rs606545	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,17:32:29:0.586:2	0/1:8,8:31:16:0.500:2	./.	./.	./.	./.	0/1:12,10:32:22:0.455:2	0/1:26,20:32:46:0.435:2
chr6	154439865	rs11575858	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,16:29:43:0.372:2	./.	./.	./.	./.	./.	./.
chr6	154521092	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:30:71:0.056:2	./.
chr6	154567863	rs34427887	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:33:12:0.667:2	./.	./.	0/1:52,62:31:114:0.544:2	./.	0/1:76,53:32:129:0.411:2	./.	./.	0/1:63,76:32:140:0.547:2
chr6	154763401	rs6557351	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,4:27:20:0.200:2	0/1:20,18:30:38:0.474:2	0/1:1,27:31:28:0.964:2	0/1:27,21:30:48:0.438:2	0/1:32,24:32:56:0.429:2	./.	./.
chr6	154771277	rs9322467	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,34:29:80:0.425:2	0/1:19,29:29:48:0.604:2	0/1:0,5:31:5:1.00:2	0/1:48,46:30:94:0.489:2	0/1:0,94:29:94:1.00:2	0/1:0,85:29:85:1.00:2	0/1:0,97:30:97:1.00:2	0/1:0,100:30:100:1.00:2	0/1:0,83:30:83:1.00:2	0/1:0,67:30:67:1.00:2	0/1:47,41:28:88:0.466:2
chr6	155141313	rs17552819	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,43:32:81:0.531:2	./.	./.	./.
chr6	155145471	rs190218045	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,14:33:33:0.424:2	./.	./.	./.	./.
chr6	155153131	rs34353222	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,12:32:33:0.364:2	./.	./.
chr6	155153307	rs34802160	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,15:32:37:0.405:2	./.	./.
chr6	155153667	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,3:34:37:0.081:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	155451352	rs931312	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:24,19:32:43:0.442:2	0/1:9,12:32:21:0.571:2	./.	0/1:24,35:31:59:0.593:2	./.	0/1:23,24:31:47:0.511:2	./.	./.	./.	./.	./.
chr6	155469272	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:34:138:0.029:2	./.
chr6	155470288	rs923144	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,16:31:16:1.00:2	0/1:78,62:31:140:0.443:2	0/1:0,118:30:118:1.00:2	./.	./.	./.	./.	0/1:70,36:31:106:0.340:2	0/1:71,49:31:120:0.408:2
chr6	155470320	rs923145	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:28:11:1.00:2	0/1:82,49:28:131:0.374:2	0/1:0,126:28:126:1.00:2	./.	./.	./.	./.	0/1:78,42:29:120:0.350:2	0/1:60,44:29:104:0.423:2
chr6	155485554	rs1032141	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,13:32:29:0.448:2	0/1:8,4:31:12:0.333:2	0/1:0,2:31:2:1.00:2	0/1:9,10:31:19:0.526:2	0/1:0,10:30:10:1.00:2	0/1:0,9:31:9:1.00:2	0/1:17,4:32:21:0.190:2	./.	0/1:16,8:33:24:0.333:2	0/1:12,3:31:15:0.200:2	0/1:16,13:32:29:0.448:2
chr6	155486519	rs41284214	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:39,29:32:68:0.426:2	0/1:24,14:33:38:0.368:2	./.	./.	./.	./.	0/1:33,20:32:53:0.377:2	./.	0/1:65,42:33:107:0.393:2	./.	0/1:55,37:33:92:0.402:2
chr6	155561760	rs4259257	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,17:32:17:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,31:32:31:1.00:2	0/1:15,9:29:24:0.375:2	0/1:0,28:32:28:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,20:29:20:1.00:2
chr6	155561796	rs11751128	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,17:33:17:1.00:2	0/1:0,3:31:3:1.00:2	./.	0/1:8,10:31:18:0.556:2	./.	0/1:0,27:33:27:1.00:2	./.	0/1:12,8:34:20:0.400:2	./.	0/1:0,17:33:17:1.00:2	0/1:0,11:33:11:1.00:2
chr6	155569168	rs41284218	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,28:32:64:0.438:2	./.	./.
chr6	155575607	rs3011895	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,126:32:128:0.992:2	0/1:2,61:32:63:0.968:2	./.	0/1:85,72:31:157:0.459:2	0/1:80,57:31:137:0.416:2	0/1:0,164:31:164:1.00:2	./.	0/1:137,50:31:188:0.267:2	0/1:109,67:32:176:0.381:2	0/1:0,134:31:134:1.00:2	0/1:2,171:31:173:0.988:2
chr6	155577714	rs114239511	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,19:30:55:0.345:2	./.	./.	./.	./.
chr6	155577716	rs114515125	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,19:31:57:0.333:2	./.	./.	./.	./.
chr6	155577717	rs116268446	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,19:32:56:0.339:2	./.	./.	./.	./.
chr6	155577823	rs1571766	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:31:6:1.00:2	0/1:57,29:32:86:0.337:2	0/1:47,31:31:78:0.397:2	./.	0/1:1,78:32:79:0.987:2	0/1:62,31:31:93:0.333:2	0/1:73,28:33:101:0.277:2	./.	./.
chr6	155596901	rs927718	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:31:8:1.00:2	0/1:69,62:30:131:0.473:2	0/1:78,36:29:114:0.316:2	./.	0/1:1,129:30:130:0.992:2	0/1:98,83:30:181:0.459:2	0/1:62,67:31:129:0.519:2	./.	./.
chr6	155597147	rs1555774	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,28:31:28:1.00:2	./.	0/1:93,47:31:140:0.336:2	./.	./.	0/1:92,58:31:150:0.387:2	0/1:96,58:32:154:0.377:2	./.	./.
chr6	155597644	rs6925410	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,3:33:5:0.600:2	./.	0/1:0,7:32:7:1.00:2	0/1:3,3:32:6:0.500:2	0/1:2,3:33:5:0.600:2	./.	./.
chr6	155606325	rs324356	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:31:10:1.00:2	0/1:46,51:32:97:0.526:2	0/1:52,19:32:71:0.268:2	./.	0/1:41,23:31:64:0.359:2	0/1:74,45:32:119:0.378:2	0/1:0,90:33:90:1.00:2	./.	./.
chr6	155750035	rs231954	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:32:11:0.273:2	./.	0/1:0,86:31:86:1.00:2	0/1:58,46:30:105:0.442:2	0/1:49,31:32:80:0.388:2	0/1:0,89:32:89:1.00:2	0/1:0,73:33:73:1.00:2	./.	0/1:62,37:32:99:0.374:2
chr6	155752048	rs146745416	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,23:33:52:0.442:2	./.	./.
chr6	155761246	rs3749930	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,6:32:20:0.300:2	./.	./.	./.
chr6	155774608	rs34960420	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,41:32:87:0.471:2	0/1:24,24:32:48:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,85:33:154:0.552:2
chr6	155775980	rs12195525	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,18:32:38:0.474:2	0/1:27,15:31:42:0.357:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,21:31:51:0.412:2
chr6	157099885	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2
chr6	157405930	rs3734441	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,23:31:41:0.561:2	0/1:10,9:30:19:0.474:2	0/1:3,3:31:6:0.500:2	0/1:0,46:30:46:1.00:2	0/1:3,51:30:54:0.944:2	0/1:27,23:29:51:0.460:2	./.	0/1:27,31:30:58:0.534:2	0/1:21,28:30:49:0.571:2	0/1:0,36:28:36:1.00:2	./.
chr6	157510901	rs141190049	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,28:31:64:0.438:2	./.	./.	./.	./.	./.
chr6	157522360	rs61738955	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,26:29:55:0.473:2	./.	./.	./.	./.	./.
chr6	157529017	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,5:33:167:0.030:2	./.	./.	./.
chr6	157963743	rs2365611	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:29:11:0.400:2	0/1:40,32:29:73:0.444:2	./.	0/1:32,32:29:64:0.500:2	0/1:54,66:29:121:0.550:2	./.	0/1:0,57:30:57:1.00:2	0/1:19,24:28:43:0.558:2	./.
chr6	158294184	rs9355424	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,10:32:19:0.526:2	./.
chr6	158330719	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:33:107:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	158330765	rs3211067	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,108:32:109:0.991:2	0/1:1,52:32:53:0.981:2	0/1:7,4:31:11:0.364:2	0/1:60,64:31:124:0.516:2	0/1:43,28:32:71:0.394:2	./.	./.	./.	./.	0/1:56,49:32:105:0.467:2	0/1:87,53:32:140:0.379:2
chr6	158497717	rs2296508	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,11:27:35:0.314:2	0/1:12,12:29:24:0.500:2	./.	0/1:23,18:31:41:0.439:2	0/1:20,15:28:35:0.429:2	./.	0/1:0,20:29:20:1.00:2	./.	./.	0/1:0,35:30:35:1.00:2	0/1:29,34:28:63:0.540:2
chr6	158499290	rs139533347	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,97:33:185:0.524:2	./.	./.	./.	./.	./.	./.
chr6	158499302	rs2296507	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,48:32:117:0.410:2	0/1:42,28:32:70:0.400:2	0/1:11,14:33:25:0.560:2	0/1:104,63:32:167:0.377:2	0/1:104,79:32:183:0.432:2	./.	0/1:1,164:32:165:0.994:2	./.	./.	0/1:0,92:32:92:1.00:2	0/1:70,63:33:133:0.474:2
chr6	158502527	rs1744177	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:58,51:32:109:0.468:2	0/1:38,28:32:66:0.424:2	./.	./.	0/1:63,69:31:132:0.523:2	0/1:80,53:31:133:0.398:2	./.	./.	./.	./.	0/1:74,39:32:113:0.345:2
chr6	158504520	rs61748683	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,20:32:57:0.351:2	./.	./.	./.	./.	./.	./.	./.
chr6	158505088	rs1744173	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:32:54:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,18:33:18:1.00:2	0/1:35,26:32:61:0.426:2	0/1:0,29:32:29:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,32:32:32:1.00:2	0/1:25,20:31:45:0.444:2	0/1:0,72:33:72:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,64:32:64:1.00:2
chr6	158507981	rs2296506	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:4,5:30:9:0.556:2	./.	0/1:1,8:25:9:0.889:2	./.	./.	0/1:0,3:25:3:1.00:2	./.	./.	./.	./.
chr6	158509750	rs350289	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:33:18:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,3:31:3:1.00:2	0/1:19,26:32:45:0.578:2	0/1:0,17:33:17:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,18:33:18:1.00:2	0/1:20,20:32:40:0.500:2	0/1:0,42:33:42:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,38:33:38:1.00:2
chr6	158510873	rs61748685	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,11:33:25:0.440:2	./.	./.	./.	./.
chr6	158517308	rs2502601	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,22:31:48:0.458:2	0/1:10,10:33:20:0.500:2	0/1:0,4:33:4:1.00:2	0/1:16,23:32:39:0.590:2	0/1:21,11:32:32:0.344:2	0/1:19,11:32:30:0.367:2	0/1:1,35:33:36:0.972:2	0/1:15,20:32:35:0.571:2	./.	0/1:0,14:33:14:1.00:2	0/1:21,31:32:52:0.596:2
chr6	158569929	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,4:32:115:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr6	158571501	rs6929274	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:31:65:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,9:30:9:1.00:2	0/1:42,54:30:96:0.563:2	0/1:0,44:30:44:1.00:2	0/1:50,32:30:82:0.390:2	0/1:25,28:30:53:0.528:2	0/1:0,47:30:47:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,56:31:56:1.00:2	0/1:1,100:31:101:0.990:2
chr6	158571611	rs112780453	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,14:30:28:0.500:2	0/1:23,18:31:41:0.439:2
chr6	158735087	rs9364951	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:31:49:1.00:2	0/1:0,35:31:35:1.00:2	0/1:2,4:32:6:0.667:2	0/1:41,32:31:73:0.438:2	0/1:0,89:30:89:1.00:2	0/1:2,74:30:76:0.974:2	0/1:1,77:31:78:0.987:2	0/1:0,79:31:79:1.00:2	0/1:39,45:32:84:0.536:2	0/1:30,30:31:60:0.500:2	0/1:0,41:31:42:1.00:2
chr6	158735090	rs7756620	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:32:49:1.00:2	0/1:0,34:31:34:1.00:2	0/1:2,4:32:6:0.667:2	0/1:43,32:31:75:0.427:2	0/1:0,89:31:89:1.00:2	0/1:2,74:30:76:0.974:2	0/1:1,77:31:78:0.987:2	0/1:0,79:31:79:1.00:2	0/1:39,45:32:84:0.536:2	0/1:29,30:31:59:0.508:2	0/1:0,42:32:42:1.00:2
chr6	158870081	rs705956	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:23,28:31:51:0.549:2	0/1:18,10:32:28:0.357:2	./.	0/1:52,35:33:87:0.402:2	./.	./.	0/1:66,81:32:148:0.551:2	0/1:57,60:32:117:0.513:2	0/1:46,42:33:89:0.477:2	0/1:0,71:33:71:1.00:2	0/1:0,50:32:50:1.00:2
chr6	158882620	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:34:98:0.041:2	./.	./.
chr6	158910698	rs12206717	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,53:32:99:0.535:2	./.	./.
chr6	158923120	rs138229082	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,28:30:52:0.538:2	./.	./.	./.
chr6	158923156	rs370813346	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:32:35:0.114:2	./.	./.	./.	./.
chr6	158923434	rs9364968	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:32:37:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,59:33:59:1.00:2	0/1:2,59:32:61:0.967:2	0/1:23,23:32:46:0.500:2	0/1:30,29:31:59:0.492:2	0/1:44,34:31:78:0.436:2	0/1:0,55:32:55:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,32:31:32:1.00:2
chr6	158924088	rs914690	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:29:70:1.00:2	0/1:0,36:28:36:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,91:29:91:1.00:2	0/1:0,93:27:93:1.00:2	0/1:0,97:29:97:1.00:2	0/1:0,92:29:92:1.00:2	0/1:0,114:28:114:1.00:2	0/1:0,107:29:107:1.00:2	0/1:0,101:28:102:1.00:2	0/1:0,87:28:88:1.00:2
chr6	158924595	rs3749853	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,14:32:38:0.368:2	0/1:7,6:33:13:0.462:2	./.	./.	./.	0/1:24,24:33:48:0.500:2	0/1:33,21:33:54:0.389:2	./.	./.	0/1:13,19:34:32:0.594:2	./.
chr6	158924661	rs41266335	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,12:31:30:0.400:2	./.	./.	./.	./.	./.	./.
chr6	158927651	rs3828712	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:75,65:33:140:0.464:2	0/1:28,30:32:59:0.517:2	0/1:10,10:32:20:0.500:2	0/1:97,87:33:184:0.473:2	./.	./.	./.	./.	./.	0/1:80,64:32:144:0.444:2	0/1:1,146:32:147:0.993:2
chr6	158957831	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,2:34:5:0.400:2	./.
chr6	159058250	rs144685549	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,21:33:46:0.457:2	./.	./.	./.
chr6	159058659	rs35378330	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,21:32:49:0.429:2	0/1:34,21:32:55:0.382:2	0/1:27,25:32:52:0.481:2	./.	./.	0/1:25,21:32:46:0.457:2	./.
chr6	159058709	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:30:73:0.055:2	./.	./.	./.
chr6	159065758	rs2306751	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:5,4:30:9:0.444:2	./.	./.	./.	0/1:0,11:30:11:1.00:2	0/1:0,7:29:7:1.00:2	0/1:10,3:27:13:0.231:2	0/1:0,5:32:5:1.00:2	0/1:0,15:31:15:1.00:2	./.
chr6	159178345	rs901363	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,44:31:70:0.629:2	./.	0/1:28,19:31:47:0.404:2	0/1:0,69:30:69:1.00:2	./.	0/1:20,36:31:56:0.643:2	0/1:45,17:31:63:0.274:2	./.
chr6	159184462	rs2291387	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,56:30:56:1.00:2	0/1:2,40:30:42:0.952:2	./.	0/1:44,36:30:80:0.450:2	0/1:0,46:30:46:1.00:2	0/1:0,70:29:70:1.00:2	0/1:44,27:31:71:0.380:2	0/1:3,67:29:70:0.957:2	0/1:32,64:30:96:0.667:2	0/1:42,44:29:86:0.512:2	0/1:3,70:29:73:0.959:2
chr6	159184507	rs2291386	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,25:32:62:0.403:2	./.	./.	./.	./.
chr6	159185563	rs3123101	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:31:59:1.00:2	0/1:0,22:32:22:1.00:2	0/1:5,15:31:20:0.750:2	0/1:45,70:31:115:0.609:2	0/1:0,124:31:124:1.00:2	0/1:0,108:30:108:1.00:2	./.	0/1:1,115:31:116:0.991:2	0/1:55,51:31:106:0.481:2	0/1:43,40:32:83:0.482:2	0/1:0,78:31:78:1.00:2
chr6	159205668	rs3103003	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,55:31:55:1.00:2	0/1:0,44:32:44:1.00:2	./.	0/1:44,32:31:76:0.421:2	0/1:0,112:30:112:1.00:2	0/1:0,102:30:102:1.00:2	./.	0/1:0,111:30:111:1.00:2	0/1:46,38:32:84:0.452:2	0/1:37,34:31:72:0.479:2	0/1:1,70:31:71:0.986:2
chr6	159262953	rs3127158	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:63,32:32:95:0.337:2	0/1:24,28:31:52:0.538:2	./.	./.	./.	./.	./.	0/1:55,59:32:114:0.518:2	0/1:80,56:33:136:0.412:2	./.	./.
chr6	159262974	rs113978641	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,27:32:67:0.403:2	./.	./.	./.	./.
chr6	159331148	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:32:84:0.048:2	./.
chr6	159398633	rs3756988	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,86:32:177:0.486:2	./.	./.	./.	./.	./.
chr6	159398700	rs3756987	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,70:31:146:0.479:2	./.	./.	./.	./.	./.
chr6	159398764	rs12191022	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,40:31:83:0.482:2	./.	./.	./.	./.	./.
chr6	159399348	rs768994	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,12:30:18:0.667:2	./.	./.	./.	./.	./.
chr6	159403612	rs142857859	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:33:100:0.040:2	./.	./.	./.	./.
chr6	159407446	rs34582178	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,49:32:115:0.426:2	0/1:95,4:32:99:0.040:2	./.	./.	./.	./.
chr6	159414899	rs16889320	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,40:33:95:0.426:2	./.	./.	./.	./.	./.
chr6	159420574	rs10945587	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,21:29:51:0.412:2	./.	./.	./.	./.	./.
chr6	159457840	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,4:33:87:0.046:2	./.	./.	./.	./.	./.	./.	./.
chr6	159461781	rs142994072	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,71:29:142:0.500:2	./.	./.	./.	./.
chr6	159650978	rs509648	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,25:29:50:0.500:2	./.	0/1:30,37:29:67:0.552:2	0/1:31,36:29:67:0.537:2	0/1:47,48:30:95:0.505:2	./.	0/1:38,42:29:80:0.525:2	./.
chr6	159652931	rs420137	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:32:43:1.00:2	0/1:0,25:33:25:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,62:33:62:1.00:2	0/1:1,44:32:45:0.978:2	0/1:41,31:32:72:0.431:2	0/1:3,37:33:40:0.925:2	0/1:1,73:32:74:0.986:2	0/1:0,47:34:47:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,73:32:73:1.00:2
chr6	159653544	rs139265083	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,17:32:23:0.739:2	./.	./.
chr6	159653635	rs381639	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,10:27:10:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,3:28:3:1.00:2	0/1:11,6:24:17:0.353:2	0/1:0,14:27:14:1.00:2	0/1:10,4:26:14:0.286:2	0/1:7,4:23:11:0.364:2	0/1:5,4:27:9:0.444:2	0/1:0,12:28:12:1.00:2	0/1:5,4:28:9:0.444:2	0/1:0,17:27:17:1.00:2
chr6	159654487	rs404435	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:31:20:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,28:29:28:1.00:2	0/1:12,20:31:32:0.625:2	0/1:0,27:31:27:1.00:2	0/1:1,30:30:31:0.968:2	0/1:0,16:31:16:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,18:29:18:1.00:2
chr6	159654539	rs142239017	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:32:9:0.333:2	./.	./.	./.	./.
chr6	159654551	rs370434	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,10:32:10:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,8:29:8:1.00:2	0/1:6,13:32:19:0.684:2	0/1:0,7:33:7:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,12:34:12:1.00:2	0/1:0,10:32:10:1.00:2
chr6	159654829	rs638551	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:29:4:1.00:2	./.	./.	0/1:2,3:28:5:0.600:2	0/1:2,5:29:7:0.714:2	./.	./.	./.
chr6	159654913	rs653521	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:30:10:0.300:2	./.	./.	./.
chr6	159654994	rs402388	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,5:33:5:1.00:2	./.	./.	0/1:0,7:31:7:1.00:2	0/1:0,7:33:7:1.00:2	0/1:4,5:29:9:0.556:2	0/1:0,2:31:2:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,3:33:3:1.00:2	./.	0/1:1,3:33:4:0.750:2
chr6	159655084	rs420054	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:2,33:32:35:0.943:2	0/1:0,13:33:13:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,63:32:63:1.00:2	0/1:52,48:32:100:0.480:2	0/1:1,62:32:63:0.984:2	0/1:3,64:32:67:0.955:2	0/1:2,95:33:97:0.979:2	0/1:0,85:32:85:1.00:2	0/1:0,52:32:52:1.00:2
chr6	159655102	rs436743	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:31:40:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,64:32:64:1.00:2	0/1:55,51:31:106:0.481:2	0/1:1,58:32:60:0.983:2	0/1:3,74:31:77:0.961:2	0/1:2,105:33:107:0.981:2	0/1:0,93:32:93:1.00:2	0/1:0,56:31:56:1.00:2
chr6	159655326	rs3003174	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:28:9:1.00:2	0/1:0,9:29:9:1.00:2	0/1:11,3:30:14:0.214:2	./.	./.	0/1:0,4:29:4:1.00:2	./.	./.
chr6	159655383	rs2501176	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:26:22:1.00:2	0/1:0,15:27:15:1.00:2	0/1:0,3:27:3:1.00:2	0/1:0,37:26:37:1.00:2	0/1:0,45:26:45:1.00:2	0/1:37,21:26:58:0.362:2	0/1:0,30:27:30:1.00:2	0/1:0,35:26:35:1.00:2	0/1:0,24:26:24:1.00:2	0/1:0,27:27:27:1.00:2	0/1:0,24:27:24:1.00:2
chr6	159655402	rs2932988	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:25:40:1.00:2	0/1:1,30:26:32:0.968:2	0/1:0,6:27:6:1.00:2	0/1:0,77:26:78:1.00:2	0/1:0,113:26:113:1.00:2	0/1:56,38:27:94:0.404:2	0/1:0,79:26:79:1.00:2	0/1:0,77:26:77:1.00:2	0/1:0,68:26:68:1.00:2	0/1:0,50:26:50:1.00:2	0/1:0,57:27:57:1.00:2
chr6	159660879	rs386360	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:29:25:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,6:28:6:1.00:2	0/1:0,52:28:52:1.00:2	0/1:0,71:28:71:1.00:2	0/1:23,21:29:44:0.477:2	0/1:0,77:28:77:1.00:2	0/1:0,65:28:65:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,22:28:22:1.00:2	0/1:0,39:29:39:1.00:2
chr6	159667961	rs294911	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,20:28:51:0.392:2	0/1:39,47:30:86:0.547:2	./.	./.	./.	./.	0/1:0,83:30:83:1.00:2
chr6	159670100	rs7763726	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,3:34:31:0.097:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	159672419	rs551392	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:31:10:0.400:2	0/1:39,44:31:83:0.530:2	./.	0/1:38,36:29:74:0.486:2	0/1:42,33:32:75:0.440:2	0/1:62,39:30:101:0.386:2	./.	0/1:32,28:32:60:0.467:2	./.
chr6	159672455	rs294899	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:31:74:1.00:2	0/1:0,45:31:45:1.00:2	0/1:6,8:32:14:0.571:2	0/1:45,45:31:90:0.500:2	0/1:5,124:30:129:0.961:2	0/1:50,40:30:90:0.444:2	0/1:54,47:31:101:0.465:2	0/1:57,69:30:126:0.548:2	0/1:1,108:31:109:0.991:2	0/1:45,39:31:84:0.464:2	0/1:0,77:31:77:1.00:2
chr6	159672542	rs550443	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,21:29:52:0.404:2	./.	0/1:34,18:29:52:0.346:2	0/1:28,36:28:64:0.563:2	0/1:44,38:29:82:0.463:2	./.	0/1:16,20:27:36:0.556:2	./.
chr6	160113872	rs4880	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:45,45:32:90:0.500:2	0/1:19,23:32:42:0.548:2	./.	0/1:4,136:33:140:0.971:2	0/1:0,97:32:97:1.00:2	./.	./.	0/1:71,63:32:134:0.470:2	0/1:64,59:33:123:0.480:2	0/1:48,45:31:93:0.484:2	./.
chr6	160114168	rs5746094	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	0/1:21,15:32:36:0.417:2	0/1:17,6:32:23:0.261:2	./.	0/1:11,16:32:27:0.593:2	0/1:15,13:33:28:0.464:2	0/1:9,7:33:16:0.438:2
chr6	160164752	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:194,5:30:199:0.025:2	0/1:150,4:32:154:0.026:2	./.	0/1:154,4:32:158:0.025:2	./.	./.	./.	./.
chr6	160169242	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:162,4:34:166:0.024:2	0/1:110,4:33:114:0.035:2	./.	./.	./.	./.	./.	0/1:192,7:32:199:0.035:2	0/1:174,7:34:181:0.039:2	./.	./.
chr6	160169258	rs7766006	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,13:32:35:0.371:2	./.	./.	./.	0/1:104,94:32:198:0.475:2	./.	./.	0/1:79,74:32:153:0.484:2	0/1:94,97:33:191:0.508:2
chr6	160169297	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,15:33:194:0.077:2	./.	./.	./.	./.	./.
chr6	160174524	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,5:30:101:0.050:2
chr6	160189582	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:33:126:0.032:2	./.	./.	./.	./.	./.
chr6	160196343	rs25683	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,45:33:45:1.00:2	0/1:1,32:32:33:0.970:2	0/1:28,26:32:54:0.481:2	./.	0/1:30,24:33:54:0.444:2	0/1:2,48:34:50:0.960:2	0/1:28,34:33:62:0.548:2	./.
chr6	160198359	rs3464	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,9:31:23:0.391:2	./.	./.	./.	0/1:68,56:32:124:0.452:2	./.	./.	0/1:91,49:32:140:0.350:2	0/1:78,55:32:133:0.414:2
chr6	160198395	rs3465	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,71:31:143:0.497:2	0/1:0,121:31:121:1.00:2	0/1:83,63:30:146:0.432:2	./.	0/1:80,80:30:160:0.500:2	0/1:104,70:32:174:0.402:2	./.	./.
chr6	160205819	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:30:78:0.051:2	./.	./.	./.	./.
chr6	160208835	.	T	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	0/1:182,4:32:186:0.022:2	0/1:184,8:31:192:0.042:2	./.	./.	./.	./.
chr6	160208884	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.	./.	./.
chr6	160208886	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:106,4:32:110:0.036:2	./.	./.	0/1:97,7:31:105:0.067:2	./.	./.	./.	./.
chr6	160211636	rs1128670	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,63:31:63:1.00:2	0/1:2,32:32:34:0.941:2	0/1:83,44:30:127:0.346:2	0/1:60,15:32:75:0.200:2	0/1:72,19:32:91:0.209:2	0/1:1,67:32:68:0.985:2	0/1:0,40:31:41:1.00:2	0/1:81,42:29:124:0.341:2
chr6	160221792	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:33:10:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	160224346	rs2146163	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,39:29:69:0.565:2	0/1:17,27:29:44:0.614:2	0/1:5,12:30:17:0.706:2	0/1:0,89:29:89:1.00:2	0/1:0,70:29:70:1.00:2	0/1:44,49:28:93:0.527:2	0/1:32,36:29:68:0.529:2	0/1:48,38:29:86:0.442:2	0/1:0,98:29:98:1.00:2	0/1:0,81:29:81:1.00:2	0/1:59,68:29:127:0.535:2
chr6	160225012	rs35435543	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,16:27:42:0.381:2	0/1:47,46:28:93:0.495:2	./.	0/1:38,33:29:71:0.465:2	0/1:0,99:29:99:1.00:2	0/1:43,41:29:84:0.488:2	./.
chr6	160230052	rs73781672	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,18:31:57:0.316:2	0/1:16,19:32:35:0.543:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	160232786	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:30:115:0.035:2
chr6	160234625	rs13220869	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:32:72:1.00:2	0/1:0,63:32:63:1.00:2	0/1:12,7:32:19:0.368:2	0/1:65,41:32:106:0.387:2	0/1:0,49:33:49:1.00:2	0/1:36,30:32:66:0.455:2	0/1:34,31:33:65:0.477:2	0/1:64,44:33:108:0.407:2	0/1:54,47:34:101:0.465:2	0/1:51,29:33:80:0.363:2	0/1:77,54:33:131:0.412:2
chr6	160240046	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:30:139:0.029:2	./.	./.
chr6	160328620	rs220721	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:32:11:0.636:2	./.	0/1:95,4:31:99:0.040:2	0/1:43,53:31:96:0.552:2	./.	./.	./.	./.	0/1:49,52:31:101:0.515:2
chr6	160328742	rs147267209	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,89:32:164:0.543:2	./.	./.	./.	./.	./.
chr6	160448324	rs8191754	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:86,61:31:147:0.415:2	0/1:34,36:31:70:0.514:2	./.	./.	./.	./.	0/1:75,66:32:141:0.468:2	./.	./.	./.	0/1:77,61:31:138:0.442:2
chr6	160453978	rs1570070	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,14:30:36:0.389:2	0/1:18,12:27:30:0.400:2	./.	./.	0/1:19,11:28:30:0.367:2	0/1:0,33:29:33:1.00:2	0/1:12,13:30:25:0.520:2	0/1:31,11:29:42:0.262:2	./.	./.	0/1:44,35:29:79:0.443:2
chr6	160464289	rs894817	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:42,20:31:62:0.323:2	0/1:14,11:32:25:0.440:2	0/1:4,4:31:8:0.500:2	./.	0/1:29,36:31:65:0.554:2	0/1:30,32:31:62:0.516:2	0/1:20,44:31:64:0.688:2	0/1:30,30:31:60:0.500:2	./.	./.	0/1:37,38:32:75:0.507:2
chr6	160468278	rs998075	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,39:31:39:1.00:2	0/1:0,34:30:34:1.00:2	./.	./.	0/1:23,23:30:46:0.500:2	0/1:0,63:30:63:1.00:2	0/1:0,59:30:59:1.00:2	./.	0/1:48,26:31:74:0.351:2	0/1:0,44:30:44:1.00:2	0/1:48,23:31:71:0.324:2
chr6	160469545	rs8191810	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,32:33:69:0.464:2	./.
chr6	160471576	rs8191820	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,19:32:35:0.543:2	./.
chr6	160481727	rs8191840	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,43:32:94:0.457:2	./.
chr6	160494409	rs629849	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,109:31:111:0.982:2	0/1:0,64:30:64:1.00:2	0/1:1,21:30:22:0.955:2	0/1:2,124:30:126:0.984:2	0/1:0,111:31:111:1.00:2	0/1:0,122:31:122:1.00:2	0/1:3,107:31:110:0.973:2	0/1:0,117:30:118:1.00:2	0/1:0,130:31:130:1.00:2	0/1:0,86:30:86:1.00:2	0/1:64,67:30:132:0.511:2
chr6	160505199	rs614754	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:32:79:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,84:31:84:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,82:31:82:1.00:2	0/1:0,88:31:88:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,82:31:82:1.00:2
chr6	160505207	rs1805075	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,34:33:83:0.410:2	./.	./.	./.	./.	./.
chr6	160510984	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:32:58:0.069:2	./.	./.	./.	./.	./.
chr6	160517481	rs1803989	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,98:31:175:0.560:2	./.	./.	./.	./.	./.
chr6	160524773	rs2297370	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,39:28:41:0.951:2	./.	./.	./.	./.	./.
chr6	160543008	rs34447885	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,55:31:102:0.539:2	./.
chr6	160543123	rs1867351	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,99:31:102:0.971:2	./.	./.	./.	0/1:36,31:31:67:0.463:2	./.
chr6	160543148	rs12208357	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,56:31:111:0.505:2	./.	./.	./.
chr6	160551204	rs683369	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,148:33:148:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,151:33:151:1.00:2	0/1:1,104:32:105:0.990:2	0/1:0,155:32:155:1.00:2	0/1:1,107:33:108:0.991:2	0/1:104,63:33:167:0.377:2	0/1:1,148:34:149:0.993:2	0/1:0,131:33:131:1.00:2	0/1:85,64:33:149:0.430:2
chr6	160560845	rs628031	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,44:29:45:0.978:2	0/1:1,17:28:18:0.944:2	0/1:0,5:30:5:1.00:2	0/1:46,28:29:74:0.378:2	0/1:18,16:28:34:0.471:2	0/1:2,60:29:62:0.968:2	0/1:0,45:29:45:1.00:2	0/1:46,20:28:66:0.303:2	./.	0/1:32,28:30:60:0.467:2	./.
chr6	160577011	rs41267797	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,38:29:82:0.463:2	./.
chr6	160645763	rs139737555	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,17:32:41:0.415:2	./.	./.	./.
chr6	160645832	rs316003	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,12:30:12:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,4:29:4:1.00:2	0/1:0,25:29:25:1.00:2	0/1:0,12:28:12:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,13:29:13:1.00:2	0/1:0,12:31:12:1.00:2	0/1:16,4:31:20:0.200:2	0/1:17,10:30:27:0.370:2
chr6	160664685	rs8177516	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,36:33:81:0.444:2	./.
chr6	160670282	rs316019	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,108:33:108:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,10:32:10:1.00:2	0/1:1,114:33:115:0.991:2	0/1:0,86:32:86:1.00:2	0/1:0,139:32:139:1.00:2	0/1:0,96:33:96:1.00:2	0/1:0,154:32:154:1.00:2	0/1:0,78:34:78:1.00:2	0/1:48,45:32:93:0.484:2	0/1:0,137:32:137:1.00:2
chr6	160679400	rs624249	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:6,3:31:9:0.333:2	0/1:3,7:33:10:0.700:2	./.	0/1:10,13:32:23:0.565:2	./.	0/1:0,15:31:15:1.00:2	0/1:3,9:32:12:0.750:2	0/1:4,14:29:18:0.778:2	./.	0/1:5,12:31:17:0.706:2	0/1:3,4:32:7:0.571:2
chr6	160769811	rs668871	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.
chr6	160858188	rs2292334	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:41,36:33:77:0.468:2	0/1:34,26:33:60:0.433:2	./.	0/1:42,46:32:88:0.523:2	0/1:43,52:32:95:0.547:2	0/1:0,53:32:53:1.00:2	./.	0/1:29,52:33:81:0.642:2	0/1:34,51:33:85:0.600:2	./.	0/1:37,48:32:85:0.565:2
chr6	160952778	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,6:30:198:0.030:2	./.
chr6	160952813	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,4:31:55:0.073:2	./.	./.	./.	./.	./.	0/1:191,6:33:197:0.030:2	0/1:194,6:30:200:0.030:2	./.
chr6	160952838	rs3124784	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,86:31:186:0.462:2	0/1:100,95:31:195:0.487:2	0/1:111,79:32:190:0.416:2	0/1:13,174:32:187:0.930:2	./.	0/1:111,78:32:189:0.413:2	0/1:108,87:33:195:0.446:2
chr6	160952908	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:29:114:0.035:2	./.	./.	./.	./.
chr6	160966559	rs139145675	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,31:33:79:0.392:2	./.	./.	./.
chr6	160968940	rs374776600	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,18:32:42:0.429:2	./.	./.	./.	./.	./.
chr6	160969629	rs1801693	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,24:30:58:0.414:2	0/1:9,11:28:20:0.550:2	0/1:8,5:28:13:0.385:2	0/1:32,28:30:60:0.467:2	0/1:0,39:29:39:1.00:2	0/1:0,50:29:50:1.00:2	0/1:52,23:29:75:0.307:2	0/1:1,59:29:60:0.983:2	0/1:0,59:30:59:1.00:2	0/1:28,19:30:47:0.404:2	0/1:0,47:28:47:1.00:2
chr6	160977056	rs201888157	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:176,16:32:192:0.083:2	0/1:157,22:32:179:0.123:2	./.	0/1:179,20:32:199:0.101:2	./.	0/1:177,20:31:197:0.102:2	./.	./.	0/1:164,30:32:194:0.155:2	./.	./.
chr6	160977059	rs59566810	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,56:33:193:0.292:2
chr6	161006172	rs41272110	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:2,113:31:115:0.983:2	0/1:0,86:32:86:1.00:2	./.	./.	0/1:98,72:32:170:0.424:2	./.	./.	./.	0/1:102,81:32:183:0.443:2	./.	./.
chr6	161007496	rs7765781	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,35:32:35:1.00:2	0/1:0,24:31:24:1.00:2	./.	./.	0/1:29,13:30:42:0.310:2	0/1:31,22:31:53:0.415:2	./.	./.	0/1:1,44:33:45:0.978:2	0/1:19,23:32:42:0.548:2	0/1:25,18:32:43:0.419:2
chr6	161007538	rs7765803	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,63:32:64:0.984:2	0/1:1,51:32:52:0.981:2	./.	./.	0/1:53,30:32:83:0.361:2	0/1:60,31:31:91:0.341:2	./.	./.	0/1:1,68:33:69:0.986:2	0/1:34,38:33:72:0.528:2	0/1:47,29:33:77:0.382:2
chr6	161022032	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:31:106:0.038:2	./.	./.	./.	./.
chr6	161022107	rs41259144	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,12:31:51:0.235:2	./.	./.	./.	./.	./.	./.
chr6	161127452	rs4063623	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.	./.
chr6	161127480	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:34:195:0.021:2	./.	./.	./.
chr6	161127515	rs374911072	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,6:30:199:0.030:2	./.	./.	./.
chr6	161128762	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:193,4:34:197:0.020:2	0/1:185,11:34:196:0.056:2	./.	./.	0/1:186,12:32:198:0.061:2	./.	./.	./.	./.	./.	0/1:188,4:34:192:0.021:2
chr6	161132146	rs4757	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,13:31:35:0.371:2	./.	0/1:116,65:31:181:0.359:2	0/1:5,177:31:182:0.973:2	0/1:94,77:31:171:0.450:2	0/1:104,79:32:183:0.432:2	./.	./.	./.
chr6	161135876	rs149145958	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,32:32:55:0.582:2	./.	./.	./.	./.	./.	./.	./.
chr6	161137779	rs14224	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,21:30:22:0.955:2	0/1:0,9:29:9:1.00:2	0/1:3,7:31:10:0.700:2	0/1:19,16:28:35:0.457:2	0/1:13,22:30:35:0.629:2	./.	0/1:29,26:30:55:0.473:2	0/1:21,20:29:41:0.488:2	0/1:18,16:29:34:0.471:2	./.	0/1:21,15:30:36:0.417:2
chr6	161139480	rs1130656	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:31:40:1.00:2	0/1:2,13:32:15:0.867:2	0/1:1,3:32:4:0.750:2	0/1:35,19:31:54:0.352:2	0/1:20,13:32:33:0.394:2	./.	0/1:38,22:30:60:0.367:2	0/1:35,31:31:66:0.470:2	0/1:18,24:32:42:0.571:2	./.	0/1:36,27:31:63:0.429:2
chr6	161139857	rs13231	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,20:32:49:0.408:2	0/1:2,47:31:49:0.959:2	0/1:33,15:31:48:0.313:2	0/1:31,14:32:45:0.311:2	./.	./.	./.
chr6	161152240	rs4252125	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:32:7:0.571:2	./.	0/1:35,35:29:70:0.500:2	0/1:3,79:31:82:0.963:2	0/1:49,47:32:96:0.490:2	0/1:60,50:32:110:0.455:2	./.	./.	./.
chr6	161162406	rs4252170	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,76:29:155:0.490:2	./.	./.	./.	./.	./.	0/1:104,75:30:179:0.419:2	./.
chr6	161173946	rs11060	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:107,77:33:185:0.418:2	0/1:110,86:32:196:0.439:2	0/1:2,25:32:27:0.926:2	0/1:3,175:32:178:0.983:2	0/1:190,6:26:196:0.031:2	./.	0/1:115,78:33:194:0.404:2	0/1:121,77:32:198:0.389:2	0/1:127,63:34:190:0.332:2	0/1:113,81:33:195:0.418:2	0/1:115,65:34:182:0.361:2
chr6	161469774	rs4559074	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:32:96:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,83:31:83:1.00:2	0/1:0,98:32:98:1.00:2	0/1:0,92:31:92:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,123:32:123:1.00:2	0/1:1,100:32:101:0.990:2	0/1:0,137:32:137:1.00:2
chr6	161508880	rs35533223	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,43:31:121:0.355:2	0/1:58,40:31:98:0.408:2	0/1:39,62:33:101:0.614:2	./.	./.
chr6	161512446	rs55704622	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,55:32:121:0.455:2	./.	./.	./.	./.	./.
chr6	161536301	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:34:99:0.040:2	./.	./.	./.	./.
chr6	161565180	rs118155311	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,30:31:59:0.508:2	./.	./.	0/1:33,49:32:82:0.598:2	./.	./.	./.	./.
chr6	161781225	rs1801334	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:45,37:32:82:0.451:2	0/1:48,18:32:66:0.273:2	./.	./.	0/1:45,37:32:82:0.451:2	0/1:44,47:31:91:0.516:2	./.	./.	./.	./.	./.
chr6	161807855	rs1801582	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,8:33:20:0.400:2	./.	./.	0/1:88,60:32:148:0.405:2	./.	./.	0/1:65,76:34:141:0.539:2	./.	0/1:88,70:32:158:0.443:2
chr6	162622197	rs1801474	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,40:31:89:0.449:2	./.	./.	./.	./.	./.	./.	./.
chr6	163510335	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,4:32:73:0.055:2	./.	./.	./.	./.	./.	./.	./.
chr6	163956146	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:32:168:0.024:2	./.	./.	./.
chr6	165712927	rs56325343	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,5:31:26:0.192:2	0/1:14,12:32:26:0.462:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	165712942	rs61733397	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,26:32:51:0.510:2	./.	./.	./.	./.	0/1:39,30:33:69:0.435:2
chr6	165713961	rs510579	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,11:32:18:0.611:2	0/1:6,5:32:11:0.455:2	./.	0/1:7,9:32:16:0.563:2	0/1:7,4:30:11:0.364:2	./.	./.	0/1:9,3:33:12:0.250:2	0/1:7,8:32:15:0.533:2	./.	./.
chr6	165715460	rs9459355	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,11:30:20:0.550:2	0/1:16,3:28:19:0.158:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	165715673	rs9459356	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,38:31:87:0.437:2	0/1:32,24:32:56:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	165792765	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:32:149:0.027:2	./.	./.	./.	./.
chr6	165801790	rs1511746	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,21:32:46:0.457:2
chr6	165809833	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,4:33:111:0.036:2	./.	./.	./.	./.	./.	./.	./.
chr6	165832227	rs220740	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,10:28:40:0.250:2	0/1:13,12:32:25:0.480:2	./.	./.	0/1:0,34:32:34:1.00:2	./.
chr6	166571935	rs35819705	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,28:30:44:0.636:2	0/1:18,11:31:29:0.379:2	./.	./.	./.	0/1:26,40:28:66:0.606:2	./.	0/1:13,29:30:42:0.690:2	0/1:25,26:31:52:0.510:2	./.	0/1:5,13:29:18:0.722:2
chr6	166579270	rs2305089	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:61,52:31:113:0.460:2	0/1:34,44:32:78:0.564:2	./.	0/1:93,69:31:163:0.426:2	./.	0/1:79,104:30:183:0.568:2	./.	0/1:84,94:30:179:0.528:2	0/1:0,176:31:178:1.00:2	0/1:1,157:30:158:0.994:2	0/1:0,109:31:109:1.00:2
chr6	166580188	rs1056048	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,51:29:81:0.630:2	./.	./.	./.	./.	0/1:25,39:31:64:0.609:2	0/1:0,62:30:62:1.00:2	0/1:15,24:30:39:0.615:2
chr6	166720806	rs911203	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	./.
chr6	166721211	rs13204594	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,7:31:10:0.700:2	./.	./.	0/1:0,9:29:10:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,17:31:17:1.00:2	0/1:6,4:29:10:0.400:2	0/1:0,9:28:9:1.00:2
chr6	166721224	rs7757150	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,4:32:7:0.571:2	./.	./.	0/1:0,6:31:6:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,14:33:14:1.00:2	0/1:6,4:28:10:0.400:2	0/1:0,9:30:9:1.00:2
chr6	166736362	rs7088	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,9:31:15:0.600:2	0/1:105,66:31:171:0.386:2	0/1:95,60:32:155:0.387:2	./.	0/1:84,72:32:156:0.462:2	./.	0/1:104,88:32:192:0.458:2	0/1:0,124:32:124:1.00:2	0/1:110,76:32:186:0.409:2
chr6	166739589	rs12190616	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:30,19:31:49:0.388:2	0/1:32,18:30:50:0.360:2	./.	0/1:47,40:32:87:0.460:2	./.	0/1:50,39:31:89:0.438:2	./.	0/1:0,79:31:79:1.00:2	0/1:41,57:32:98:0.582:2	./.	./.
chr6	166739646	rs11551053	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,24:29:70:0.343:2	./.	./.	./.	./.
chr6	166739684	rs10806847	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,19:31:49:0.388:2	0/1:19,16:32:35:0.457:2	./.	0/1:0,50:31:50:1.00:2	0/1:0,35:31:35:1.00:2	0/1:45,26:31:71:0.366:2	0/1:0,31:32:31:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,75:32:75:1.00:2
chr6	166755975	rs10862	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,16:31:36:0.444:2	0/1:16,6:29:22:0.273:2	0/1:5,3:31:8:0.375:2	0/1:0,35:31:35:1.00:2	0/1:0,32:28:32:1.00:2	0/1:28,22:31:50:0.440:2	0/1:0,6:32:6:1.00:2	0/1:2,48:29:50:0.960:2	0/1:0,21:29:21:1.00:2	0/1:0,29:28:29:1.00:2	0/1:14,5:31:19:0.263:2
chr6	166755979	rs11168	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,15:31:34:0.441:2	0/1:16,6:32:22:0.273:2	0/1:5,3:33:8:0.375:2	0/1:0,33:32:33:1.00:2	0/1:1,29:31:30:0.967:2	0/1:27,22:32:49:0.449:2	0/1:0,6:34:6:1.00:2	0/1:2,47:32:49:0.959:2	0/1:0,21:32:21:1.00:2	0/1:0,29:32:29:1.00:2	0/1:13,5:30:18:0.278:2
chr6	166779464	rs12205572	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:32:7:0.714:2	./.	./.	./.	./.	./.	./.	0/1:14,11:32:25:0.440:2	./.
chr6	166780349	rs11557064	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,16:28:28:0.571:2
chr6	166826255	rs909631	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,3:30:10:0.300:2	0/1:2,8:31:10:0.800:2	./.	0/1:11,4:31:15:0.267:2	0/1:4,14:30:18:0.778:2	0/1:0,19:29:19:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,20:31:20:1.00:2	0/1:3,9:32:12:0.750:2	0/1:0,5:29:5:1.00:2	0/1:0,9:30:9:1.00:2
chr6	166826304	rs760670	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,9:31:17:0.529:2	0/1:5,9:28:14:0.643:2	./.	0/1:15,15:29:30:0.500:2	0/1:15,13:29:28:0.464:2	0/1:0,31:30:31:1.00:2	0/1:0,22:27:22:1.00:2	0/1:0,42:28:42:1.00:2	0/1:4,17:31:21:0.810:2	0/1:0,13:29:13:1.00:2	0/1:0,19:29:19:1.00:2
chr6	166862233	rs2230730	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,95:30:195:0.487:2	0/1:104,92:32:196:0.469:2	0/1:100,90:30:190:0.474:2	0/1:110,87:31:197:0.442:2	0/1:110,86:32:197:0.439:2	0/1:1,188:31:189:0.995:2	0/1:99,88:30:187:0.471:2	0/1:84,68:31:152:0.447:2
chr6	166873010	rs2230729	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,21:32:66:0.318:2	0/1:45,31:31:76:0.408:2	./.	./.	0/1:32,51:31:83:0.614:2	0/1:33,36:32:70:0.522:2	0/1:24,30:32:54:0.556:2	./.
chr6	166889281	rs4373344	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,38:31:69:0.551:2	0/1:18,28:32:46:0.609:2	./.	0/1:29,31:31:60:0.517:2	./.	./.	./.	0/1:32,41:31:73:0.562:2
chr6	166912062	rs2230732	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,55:30:113:0.487:2	./.	./.	0/1:50,54:30:104:0.519:2	./.	./.
chr6	166952264	rs1003857	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:30:42:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,3:29:3:1.00:2	0/1:32,33:30:65:0.508:2	0/1:2,62:29:64:0.969:2	0/1:16,27:30:43:0.628:2	0/1:27,41:29:68:0.603:2	0/1:0,70:29:70:1.00:2	0/1:35,25:31:60:0.417:2	0/1:23,21:30:44:0.477:2	0/1:0,49:29:49:1.00:2
chr6	167040463	rs10946179	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:6,7:31:13:0.538:2	0/1:4,8:30:12:0.667:2	0/1:0,5:30:5:1.00:2	./.	./.	./.	./.	0/1:17,28:29:45:0.622:2	./.	./.	./.
chr6	167271711	rs943687	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:30:89:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,126:30:126:1.00:2	0/1:1,74:30:75:0.987:2	0/1:0,96:30:96:1.00:2	0/1:0,113:30:113:1.00:2	0/1:2,153:30:155:0.987:2	0/1:81,53:32:134:0.396:2	0/1:0,84:31:84:1.00:2	0/1:0,126:30:126:1.00:2
chr6	167271716	rs9347162	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,74:31:74:1.00:2	0/1:0,44:31:44:1.00:2	./.	0/1:58,49:29:107:0.458:2	0/1:1,75:29:76:0.987:2	0/1:0,87:30:87:1.00:2	0/1:67,52:30:119:0.437:2	0/1:4,138:30:142:0.972:2	0/1:87,52:31:139:0.374:2	0/1:0,66:30:66:1.00:2	0/1:59,55:29:114:0.482:2
chr6	167344583	rs13213697	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	167369650	rs12193095	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,9:29:11:0.818:2	./.	./.	0/1:4,8:30:13:0.667:2	./.	./.	./.
chr6	167412952	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,4:27:29:0.138:2	./.	./.	./.	./.	./.	./.
chr6	167413539	rs12212247	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,42:32:43:0.977:2	0/1:0,32:33:32:1.00:2	./.	0/1:43,33:32:76:0.434:2	0/1:18,14:30:32:0.438:2	./.	0/1:32,13:34:45:0.289:2	./.	0/1:60,47:34:107:0.439:2	0/1:32,32:32:64:0.500:2	0/1:54,59:32:113:0.522:2
chr6	167424293	rs1322077	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,93:32:93:1.00:2	0/1:1,65:31:66:0.985:2	./.	0/1:58,50:32:108:0.463:2	0/1:36,37:31:73:0.507:2	./.	0/1:36,49:32:85:0.576:2	./.	0/1:52,65:33:117:0.556:2	0/1:24,43:32:67:0.642:2	0/1:61,75:32:136:0.551:2
chr6	167438364	rs34585172	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:35:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	167549775	rs3093007	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,23:30:61:0.377:2	./.	./.	./.	./.	./.
chr6	167549863	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:32:169:0.024:2	./.	./.	./.	./.	./.
chr6	167550042	rs2071171	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,44:32:78:0.564:2	0/1:28,15:30:43:0.349:2	./.	0/1:44,38:32:82:0.463:2	0/1:2,69:32:71:0.972:2	0/1:37,44:32:81:0.543:2	0/1:1,79:32:80:0.988:2	0/1:1,79:32:80:0.988:2	0/1:44,47:33:91:0.516:2	./.	0/1:0,89:32:89:1.00:2
chr6	167571048	rs6902566	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:30:29:1.00:2	0/1:0,15:28:15:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,24:29:24:1.00:2	0/1:0,17:29:17:1.00:2	0/1:0,11:31:11:1.00:2
chr6	167571266	rs4569938	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,13:31:21:0.619:2
chr6	167571430	rs928344	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,17:32:39:0.436:2	0/1:18,6:32:24:0.250:2	0/1:0,3:30:3:1.00:2	0/1:17,20:31:37:0.541:2	./.	0/1:20,12:30:32:0.375:2	./.	./.	0/1:24,20:30:44:0.455:2	0/1:0,39:31:39:1.00:2	./.
chr6	167590541	rs3737098	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,131:31:181:0.728:2	0/1:47,127:31:175:0.730:2	0/1:9,36:30:45:0.800:2	0/1:0,173:30:173:1.00:2	0/1:1,187:31:188:0.995:2	0/1:92,90:31:183:0.495:2	0/1:68,122:31:190:0.642:2	0/1:3,182:32:185:0.984:2	0/1:74,102:32:176:0.580:2	0/1:3,163:32:167:0.982:2	0/1:118,60:32:179:0.337:2
chr6	167590574	rs2989541	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,149:32:149:1.00:2	0/1:0,109:32:109:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,153:32:153:1.00:2	0/1:0,113:31:113:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,117:32:117:1.00:2	0/1:0,121:31:121:1.00:2	0/1:0,138:32:139:1.00:2	0/1:0,121:32:121:1.00:2	0/1:0,113:32:113:1.00:2
chr6	167591904	rs202225552	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,27:34:200:0.135:2	./.	./.
chr6	167591954	rs200583385	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,15:31:97:0.155:2	./.	./.	./.	0/1:162,30:33:192:0.156:2	./.	./.	./.	0/1:138,54:32:192:0.281:2
chr6	167591956	rs201757849	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,71:30:198:0.359:2	./.	./.	0/1:160,35:31:195:0.179:2	./.	./.
chr6	167592524	rs2989545	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,34:30:34:1.00:2	0/1:0,14:30:14:1.00:2	./.	./.	0/1:17,8:28:25:0.320:2	0/1:30,12:30:42:0.286:2	0/1:19,14:30:33:0.424:2	0/1:39,24:30:63:0.381:2	0/1:34,37:31:71:0.521:2	./.	0/1:15,21:29:36:0.583:2
chr6	167592576	rs60976240	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,34:30:36:0.944:2	0/1:2,13:31:15:0.867:2	./.	./.	0/1:12,7:30:19:0.368:2	0/1:19,19:31:38:0.500:2	0/1:20,19:32:39:0.487:2	0/1:23,23:31:46:0.500:2	0/1:26,42:32:68:0.618:2	./.	0/1:21,25:30:46:0.543:2
chr6	167592601	rs200019718	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,4:26:46:0.087:2	./.	./.	./.	./.	./.	./.	./.
chr6	167592605	rs200932131	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,4:31:48:0.083:2	./.	./.	./.	./.	./.	./.	./.
chr6	167592606	rs201866116	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,4:31:48:0.083:2	./.	./.	./.	./.	./.	./.	./.
chr6	167594182	rs56218798	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,125:29:125:1.00:2	0/1:0,93:28:93:1.00:2	0/1:0,41:29:41:1.00:2	0/1:0,189:29:190:1.00:2	0/1:0,189:29:189:1.00:2	0/1:0,189:28:189:1.00:2	0/1:0,138:29:138:1.00:2	0/1:0,191:28:191:1.00:2	0/1:0,187:29:187:1.00:2	0/1:0,184:28:184:1.00:2	0/1:0,180:27:180:1.00:2
chr6	167594216	rs2297459	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,6:30:46:0.130:2	./.	./.	./.	0/1:105,88:31:194:0.456:2	./.	./.	./.	0/1:90,92:31:183:0.505:2
chr6	167595371	rs202096111	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,21:27:21:1.00:2	0/1:0,10:26:10:1.00:2	./.	./.	./.	0/1:25,5:27:30:0.167:2	0/1:28,12:27:40:0.300:2	0/1:28,4:26:32:0.125:2	0/1:24,8:28:32:0.250:2	./.	0/1:35,4:26:39:0.103:2
chr6	167709702	rs2235197	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,61:32:141:0.433:2	./.
chr6	167711559	rs113906647	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,13:34:21:0.619:2	./.	./.
chr6	167719436	rs2072767	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,73:31:130:0.562:2	./.	0/1:1,128:31:129:0.992:2	./.	0/1:84,98:31:182:0.538:2	./.	0/1:0,93:31:93:1.00:2	0/1:66,52:32:118:0.441:2
chr6	167728725	rs663227	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:124,5:34:129:0.039:2	./.	./.	./.	0/1:113,4:33:117:0.034:2	./.	./.	./.
chr6	167728774	rs663606	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:84,54:30:138:0.391:2	0/1:54,24:30:78:0.308:2	./.	0/1:146,44:32:190:0.232:2	0/1:151,45:30:196:0.230:2	0/1:2,93:31:95:0.979:2	0/1:190,7:30:197:0.036:2	0/1:151,42:31:193:0.218:2	0/1:0,114:31:114:1.00:2	0/1:0,61:30:61:1.00:2	0/1:128,47:30:175:0.269:2
chr6	167728775	rs9459921	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:151,40:32:191:0.209:2	./.	0/1:18,81:31:99:0.818:2	0/1:192,6:30:198:0.030:2	0/1:164,30:31:194:0.155:2	0/1:114,7:31:121:0.058:2	0/1:0,61:31:61:1.00:2	./.
chr6	167728791	rs7739897	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:157,37:31:194:0.191:2	./.	./.	./.	./.	./.	./.
chr6	167728900	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,4:31:82:0.049:2	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:28:72:0.056:2	./.	./.
chr6	167728901	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,4:30:81:0.049:2	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:31:71:0.056:2	./.	./.
chr6	167738723	rs55788158	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:11,13:31:25:0.542:2	0/1:14,11:31:25:0.440:2	./.	./.	0/1:45,48:30:93:0.516:2	./.	./.	./.	./.	./.	./.
chr6	167753691	rs877653	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:44,39:30:83:0.470:2	0/1:32,18:29:50:0.360:2	./.	./.	./.	./.	./.	0/1:46,42:30:89:0.477:2	0/1:0,106:31:107:1.00:2	./.	./.
chr6	167754360	rs77767783	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,42:30:115:0.365:2	./.
chr6	167754661	rs909545	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,108:32:108:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,11:31:11:1.00:2	0/1:1,122:32:123:0.992:2	0/1:0,68:31:69:1.00:2	0/1:0,125:32:125:1.00:2	0/1:36,41:31:77:0.532:2	0/1:0,127:32:127:1.00:2	0/1:0,115:33:117:1.00:2	0/1:1,93:33:94:0.989:2	0/1:68,71:32:139:0.511:2
chr6	167754702	rs909546	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:46,44:31:90:0.489:2	0/1:25,24:31:49:0.490:2	./.	./.	0/1:23,28:31:51:0.549:2	./.	0/1:33,36:31:69:0.522:2	0/1:46,45:30:91:0.495:2	0/1:0,96:32:96:1.00:2	./.	0/1:44,52:31:96:0.542:2
chr6	167754710	rs41266331	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:32:7:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	167754721	rs9457304	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:41,45:31:86:0.523:2	0/1:25,24:32:49:0.490:2	./.	./.	0/1:32,32:31:64:0.500:2	./.	./.	./.	./.	./.	./.
chr6	167772869	rs35266853	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,25:32:58:0.431:2	0/1:19,12:32:31:0.387:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	167786690	rs146321515	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:31:64:0.063:2	./.	./.	0/1:39,5:31:44:0.114:2	0/1:98,4:32:102:0.039:2
chr6	167786750	rs143094588	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:127,22:30:149:0.148:2	0/1:41,19:31:60:0.317:2	./.	./.	0/1:93,15:31:108:0.139:2	0/1:119,19:31:138:0.138:2	0/1:90,16:32:106:0.151:2	0/1:133,18:32:151:0.119:2	0/1:127,20:31:147:0.136:2	0/1:109,5:28:114:0.044:2	0/1:139,23:31:162:0.142:2
chr6	167787844	rs200608883	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,10:31:51:0.196:2	./.	./.	./.	0/1:177,16:31:193:0.083:2	./.	./.	./.	0/1:162,25:31:187:0.134:2
chr6	167787862	rs79258919	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:118,70:30:188:0.372:2	0/1:139,51:31:190:0.268:2	0/1:0,69:30:69:1.00:2	0/1:4,185:31:190:0.979:2	0/1:104,91:31:195:0.467:2	0/1:85,108:30:193:0.560:2	0/1:145,49:31:194:0.253:2	0/1:148,50:31:198:0.253:2	0/1:145,52:32:197:0.264:2	0/1:83,112:30:195:0.574:2	0/1:125,63:32:188:0.335:2
chr6	167789473	rs76263155	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,23:33:59:0.390:2
chr6	167789488	rs9355636	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,6:30:68:0.088:2	0/1:54,4:31:58:0.069:2	./.	0/1:69,5:31:74:0.068:2	./.	./.
chr6	167789493	rs3010590	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:30:9:0.667:2	./.	0/1:56,4:32:61:0.067:2	0/1:67,6:31:73:0.082:2	0/1:28,27:31:55:0.491:2	0/1:79,8:27:88:0.092:2	0/1:69,9:32:78:0.115:2	0/1:39,5:28:44:0.114:2	0/1:22,40:29:62:0.645:2
chr6	167790053	rs138727280	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	0/1:162,8:31:170:0.047:2	./.	0/1:1,2:33:3:0.667:2	./.	./.
chr6	167790108	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,80:30:195:0.410:2	./.	./.	0/1:169,24:29:193:0.124:2	./.	./.
chr6	167790110	rs201005141	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,4:30:27:0.148:2	./.	./.	./.	0/1:181,15:31:196:0.077:2	./.	./.	./.	0/1:171,19:32:190:0.100:2
chr6	167790160	rs200905775	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,47:34:174:0.270:2	./.	./.
chr6	167791524	rs17855200	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,34:31:63:0.540:2	0/1:8,27:31:35:0.771:2	0/1:2,5:32:7:0.714:2	0/1:0,45:31:45:1.00:2	0/1:1,44:30:45:0.978:2	0/1:188,7:31:195:0.036:2	0/1:101,23:31:124:0.185:2	0/1:112,34:31:146:0.233:2	0/1:140,12:31:152:0.079:2	0/1:0,43:31:43:1.00:2	0/1:176,11:32:188:0.059:2
chr6	167791530	rs17855837	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,50:32:52:0.962:2	0/1:0,22:32:22:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,39:32:40:1.00:2	0/1:1,39:31:40:0.975:2	0/1:183,13:31:196:0.066:2	0/1:93,31:32:124:0.250:2	0/1:113,33:32:146:0.226:2	0/1:144,14:33:158:0.089:2	0/1:0,40:31:40:1.00:2	0/1:153,34:32:187:0.182:2
chr6	167791549	rs3010594	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,21:33:22:0.955:2	0/1:0,17:33:17:1.00:2	0/1:1,4:34:5:0.800:2	0/1:0,15:33:15:1.00:2	0/1:1,22:33:23:0.957:2	./.	0/1:88,19:33:107:0.178:2	0/1:102,18:33:120:0.150:2	0/1:145,11:35:156:0.071:2	0/1:0,31:33:31:1.00:2	0/1:140,32:33:172:0.186:2
chr6	167796309	rs17855834	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,52:32:103:0.505:2	0/1:55,80:32:136:0.593:2	./.	./.	./.
chr6	167796319	rs17855833	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,50:30:102:0.490:2	0/1:59,82:29:141:0.582:2	./.	./.	./.
chr6	168226523	rs611440	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,6:31:7:0.857:2	./.	./.	./.	./.	./.	./.
chr6	168276106	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,28:30:150:0.187:2
chr6	168302990	rs71573426	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,38:32:58:0.655:2	./.	./.	./.	./.	./.
chr6	168311783	rs188473435	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,37:30:64:0.578:2	./.	./.	./.	./.	./.	./.
chr6	168311805	rs35475678	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,27:31:69:0.391:2	./.	./.	./.	./.	./.	./.
chr6	168317866	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,6:32:118:0.051:2	./.
chr6	168323572	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:32:156:0.026:2	./.	./.	./.
chr6	168323616	rs138033507	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,20:32:77:0.260:2	./.	./.	./.	./.	./.	./.
chr6	168323640	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:31:112:0.036:2	./.	./.	./.
chr6	168343838	rs1132306	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:90,74:29:164:0.451:2	0/1:48,60:29:108:0.556:2	0/1:0,30:29:30:1.00:2	./.	0/1:90,96:29:187:0.516:2	./.	0/1:93,79:29:172:0.459:2	./.	0/1:93,76:31:169:0.450:2	./.	0/1:97,74:30:171:0.433:2
chr6	168349011	rs9364371	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:12,22:32:34:0.647:2	0/1:15,13:31:28:0.464:2	0/1:2,3:32:5:0.600:2	./.	./.	./.	0/1:20,24:30:44:0.545:2	./.	0/1:34,16:31:50:0.320:2	./.	0/1:27,38:32:66:0.585:2
chr6	168352105	rs2076664	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,10:28:15:0.667:2	0/1:11,11:31:22:0.500:2	./.	0/1:10,18:31:28:0.643:2	./.	./.	./.
chr6	168376820	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:30:117:0.034:2	0/1:122,4:31:126:0.032:2	./.	./.	./.	./.
chr6	168376840	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:102,5:32:109:0.047:2	./.	./.	./.	0/1:107,15:32:122:0.123:2	./.	0/1:133,9:27:144:0.063:2	./.	0/1:129,6:32:136:0.044:2	./.	./.
chr6	168376847	rs77867907	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:104,8:32:112:0.071:2	./.	./.	./.	0/1:110,24:31:134:0.179:2	0/1:166,5:32:171:0.029:2	0/1:134,12:31:146:0.082:2	./.	0/1:124,7:33:131:0.053:2	./.	0/1:115,4:32:119:0.034:2
chr6	168376866	rs2015545	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:78,30:30:108:0.278:2	0/1:52,14:31:66:0.212:2	0/1:5,6:28:11:0.545:2	./.	0/1:121,42:31:163:0.258:2	./.	0/1:128,29:30:157:0.185:2	./.	0/1:100,28:31:128:0.219:2	./.	0/1:86,23:32:109:0.211:2
chr6	168376869	rs201374833	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:83,26:32:109:0.239:2	0/1:56,13:28:69:0.188:2	0/1:5,6:31:11:0.545:2	./.	./.	./.	0/1:131,29:30:160:0.181:2	./.	0/1:100,26:32:126:0.206:2	./.	0/1:87,22:33:109:0.202:2
chr6	168376892	rs9355147	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:94,15:28:109:0.138:2	0/1:55,8:29:63:0.127:2	./.	./.	0/1:137,27:32:165:0.165:2	./.	0/1:136,14:32:150:0.093:2	./.	0/1:110,7:30:117:0.060:2	./.	./.
chr6	168376908	rs2516605	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,4:29:71:0.056:2	./.	./.	0/1:146,14:32:160:0.088:2	./.	./.	./.	./.	./.	./.
chr6	168376929	rs34297425	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:97,11:32:108:0.102:2	0/1:66,11:28:77:0.143:2	./.	./.	./.	./.	0/1:131,6:32:137:0.044:2	./.	0/1:107,5:28:112:0.045:2	./.	0/1:103,7:29:110:0.064:2
chr6	168376951	rs34562778	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:89,17:29:106:0.160:2	0/1:62,12:30:74:0.162:2	./.	./.	./.	./.	0/1:119,13:29:132:0.098:2	./.	0/1:95,10:30:105:0.095:2	./.	0/1:100,13:28:114:0.115:2
chr6	168376953	rs2516607	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:82,25:28:107:0.234:2	0/1:52,18:27:72:0.257:2	0/1:0,5:30:5:1.00:2	./.	0/1:92,64:31:156:0.410:2	0/1:167,7:23:175:0.040:2	0/1:115,19:28:134:0.142:2	./.	0/1:82,20:32:102:0.196:2	0/1:157,5:32:162:0.031:2	0/1:83,28:29:112:0.252:2
chr6	168376968	rs200262961	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	168376977	rs113501624	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:128,8:24:136:0.059:2	./.	./.	./.	./.	./.	0/1:135,5:31:140:0.036:2	./.	0/1:120,4:30:124:0.032:2	./.	0/1:122,8:28:130:0.062:2
chr6	168377009	rs373603930	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:123,10:32:133:0.075:2	0/1:61,8:27:69:0.116:2	./.	./.	0/1:162,6:24:169:0.036:2	./.	0/1:129,9:31:138:0.065:2	./.	0/1:132,10:32:142:0.070:2	0/1:173,6:33:179:0.034:2	0/1:110,14:31:125:0.113:2
chr6	168377010	rs9364374	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:92,39:30:131:0.298:2	0/1:51,19:31:70:0.271:2	0/1:2,6:24:8:0.750:2	./.	0/1:159,10:29:169:0.059:2	0/1:177,5:30:182:0.027:2	0/1:110,25:29:135:0.185:2	./.	0/1:99,43:30:143:0.303:2	0/1:134,45:29:179:0.251:2	0/1:88,33:30:122:0.273:2
chr6	168377019	rs200389857	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:118,12:24:130:0.092:2	0/1:59,4:30:63:0.063:2	./.	./.	./.	./.	0/1:116,10:31:126:0.079:2	./.	0/1:122,7:29:129:0.054:2	./.	./.
chr6	168377022	rs112006230	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:107,19:28:126:0.151:2	0/1:52,7:30:60:0.119:2	./.	./.	./.	./.	0/1:100,18:31:118:0.153:2	./.	0/1:108,16:30:125:0.129:2	./.	0/1:90,12:29:104:0.118:2
chr6	168377029	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:33:9:0.333:2	./.	./.	./.	0/1:98,10:30:108:0.093:2	./.	0/1:114,7:28:121:0.058:2	./.	0/1:98,6:29:104:0.058:2
chr6	168377051	rs369914425	G	T,C	.	PASS	AC=2,1;AF=0.222,0.111;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	0/1:31:119:0.069:2	./.	./.	./.	./.	./.	0/2:35:89:0.046:2	./.	./.	0/1:31:165:0.030:2	./.
chr6	168377052	rs111332561	G	A,T	.	PASS	AC=5,1;AF=0.278,0.056;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	0/1:29:46:0.227:2	0/1:20:12:0.400:2	./.	./.	./.	0/1:28:89:0.092:2	./.	0/1:31:114:0.198:2	0/2:27:168:0.030:2	0/1:30:82:0.150:2
chr6	168377061	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,31:29:148:0.209:2	./.
chr6	168377064	rs79533783	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:105,7:31:113:0.063:2	0/1:37,13:24:50:0.260:2	./.	./.	./.	./.	0/1:65,7:35:73:0.097:2	./.	./.	0/1:119,32:29:151:0.212:2	0/1:77,6:27:84:0.072:2
chr6	168377071	rs201618689	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:99,6:30:105:0.057:2	0/1:46,5:31:51:0.098:2	./.	./.	./.	./.	0/1:57,13:29:70:0.186:2	./.	0/1:101,6:31:107:0.056:2	./.	./.
chr6	168377093	rs4708418	G	T,C	.	PASS	AC=2,1;AF=0.222,0.111;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:BQ:DP:FA:SS	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0/1:30:109:0.037:2	./.	./.	0/2:27:58:0.086:2	./.	./.	0/1:30:178:0.034:2	./.
chr6	168377094	rs9364375	G	A,T	.	PASS	AC=6,1;AF=0.286,0.048;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant10-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	0/1:31:107:0.181:2	0/1:28:47:0.222:2	0/1:32:13:0.538:2	./.	./.	./.	0/1:30:56:0.089:2	./.	0/1:30:101:0.172:2	0/2:31:178:0.028:2	0/1:30:87:0.129:2
chr6	168377103	rs61746337	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:32:85:0.047:2
chr6	168377106	rs61754953	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:96,9:25:105:0.086:2	./.	./.	./.	./.	./.	0/1:43,5:29:48:0.104:2	./.	0/1:84,7:31:91:0.077:2	./.	0/1:76,6:23:82:0.073:2
chr6	168377119	rs199867038	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:111,14:29:125:0.112:2	0/1:48,4:32:52:0.077:2	0/1:8,4:30:12:0.333:2	./.	./.	./.	0/1:45,4:32:50:0.082:2	./.	0/1:108,10:32:118:0.085:2	./.	0/1:78,9:28:87:0.103:2
chr6	168377135	rs372663828	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:126,5:26:132:0.038:2	0/1:47,9:25:58:0.161:2	./.	./.	./.	./.	0/1:51,6:27:57:0.105:2	./.	0/1:114,5:26:119:0.042:2	./.	./.
chr6	168377136	rs377136730	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:120,12:28:133:0.091:2	0/1:48,10:27:58:0.172:2	./.	./.	0/1:59,11:32:70:0.157:2	./.	0/1:50,8:30:58:0.138:2	./.	0/1:109,11:30:120:0.092:2	./.	0/1:89,9:30:98:0.092:2
chr6	168377145	rs4708420	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:103,22:30:125:0.176:2	0/1:36,15:27:51:0.294:2	0/1:10,6:27:16:0.375:2	./.	./.	./.	0/1:51,7:30:58:0.121:2	./.	0/1:102,17:29:119:0.143:2	0/1:168,6:29:174:0.034:2	0/1:85,8:29:93:0.086:2
chr6	168377148	rs4708419	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,5:30:169:0.030:2	./.
chr6	168377161	rs113533593	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,16:30:67:0.239:2	./.	./.	./.	./.	./.	./.
chr6	168377177	rs4708615	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:31:49:0.082:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	168377178	rs4708616	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,5:29:48:0.104:2	./.	./.	0/1:51,6:29:57:0.105:2	./.	./.	./.	./.	./.	./.
chr6	168377187	rs200842645	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:126,4:31:131:0.031:2	./.	./.	./.	./.	./.	./.	0/1:75,4:32:79:0.051:2
chr6	168377190	rs202002789	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:128,5:25:133:0.038:2	./.	./.	./.	./.	./.	./.	0/1:75,6:28:81:0.074:2
chr6	168377219	rs76543658	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:68,15:32:83:0.181:2	0/1:36,10:29:46:0.217:2	0/1:0,9:31:9:1.00:2	./.	0/1:45,7:30:52:0.135:2	./.	0/1:36,10:30:46:0.217:2	./.	0/1:69,15:30:84:0.179:2	0/1:81,26:32:107:0.243:2	0/1:50,22:31:72:0.306:2
chr6	168377220	rs79173693	T	G,A	.	PASS	AC=2,2;AF=0.167,0.167;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:BQ:DP:FA:SS	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29:53:0.151:2	./.	0/2:25:50:0.149:2	./.	0/2:32:84:0.148:2	0/1:32:109:0.231:2	./.
chr6	168377248	rs375057153	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:31:139:0.029:2	./.	./.	./.
chr6	168377260	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,8:28:67:0.119:2	./.	./.	./.	./.	./.	./.
chr6	168377261	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,8:31:66:0.123:2	./.	./.	./.	./.	0/1:106,6:31:113:0.054:2	./.
chr6	168377262	rs200098500	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,9:31:66:0.136:2	./.	./.	./.	./.	0/1:107,6:26:113:0.053:2	0/1:78,4:30:82:0.049:2
chr6	168377268	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,4:30:77:0.052:2	./.	./.	./.	./.	./.	./.
chr6	168377271	rs61740140	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,5:30:82:0.061:2	./.	./.	./.	0/1:90,4:31:95:0.043:2	./.	./.
chr6	168377302	.	T	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,4:31:95:0.042:2	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:31:99:0.040:2	0/1:109,4:33:113:0.035:2	0/1:91,4:32:95:0.042:2
chr6	168377309	rs61743855	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:61,33:30:94:0.351:2	0/1:39,21:31:60:0.350:2	0/1:9,9:32:18:0.500:2	./.	./.	./.	0/1:56,43:30:99:0.434:2	./.	0/1:60,38:30:98:0.388:2	./.	0/1:53,42:30:95:0.442:2
chr6	168430348	rs4708626	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:114,13:32:127:0.102:2	0/1:74,10:28:84:0.119:2	0/1:19,6:29:25:0.240:2	0/1:139,22:30:161:0.137:2	0/1:166,29:30:195:0.149:2	0/1:146,29:31:175:0.166:2	0/1:147,38:31:185:0.205:2	0/1:159,33:31:192:0.172:2	0/1:135,18:32:153:0.118:2	0/1:111,29:32:140:0.207:2	0/1:97,17:30:114:0.149:2
chr6	168442687	rs12197062	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:76,57:32:133:0.429:2	0/1:43,35:32:78:0.449:2	./.	./.	0/1:70,56:32:126:0.444:2	./.	./.	./.	./.	./.	0/1:69,72:31:141:0.511:2
chr6	168442765	rs2073634	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:30:13:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	168457801	rs3734898	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,37:31:68:0.544:2	0/1:27,19:31:46:0.413:2	0/1:0,11:33:11:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,69:31:69:1.00:2	0/1:67,24:30:91:0.264:2	0/1:61,27:33:88:0.307:2	0/1:0,65:30:65:1.00:2	0/1:47,33:34:80:0.413:2	0/1:0,48:32:48:1.00:2	0/1:0,28:30:28:1.00:2
chr6	168457966	rs3734899	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,40:31:82:0.488:2	0/1:23,23:32:46:0.500:2	0/1:5,6:31:11:0.545:2	0/1:0,93:31:93:1.00:2	0/1:0,137:31:137:1.00:2	./.	0/1:41,40:31:81:0.494:2	0/1:74,53:31:127:0.417:2	./.	0/1:38,45:31:83:0.542:2	0/1:0,38:31:38:1.00:2
chr6	168458002	rs55991596	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:29:11:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.
chr6	168459790	rs1465182	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,5:29:14:0.357:2	0/1:7,7:30:14:0.500:2	./.	0/1:0,20:31:20:1.00:2	0/1:0,7:32:7:1.00:2	./.	0/1:3,5:29:8:0.625:2	0/1:4,6:31:10:0.600:2	./.	0/1:5,7:31:12:0.583:2	0/1:0,11:31:11:1.00:2
chr6	168459792	rs2269680	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,5:31:15:0.333:2	0/1:7,7:30:14:0.500:2	0/1:2,2:33:4:0.500:2	0/1:0,20:31:20:1.00:2	0/1:0,7:32:7:1.00:2	./.	0/1:3,5:29:8:0.625:2	0/1:4,6:32:10:0.600:2	./.	0/1:5,7:32:12:0.583:2	0/1:0,11:31:11:1.00:2
chr6	168459845	rs1548349	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,17:30:31:0.548:2	0/1:8,13:29:21:0.619:2	0/1:0,6:30:6:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,23:30:23:1.00:2	0/1:24,23:30:47:0.489:2	0/1:10,11:30:21:0.524:2	0/1:0,25:29:25:1.00:2	0/1:9,14:31:23:0.609:2	0/1:0,21:30:21:1.00:2	0/1:0,21:30:21:1.00:2
chr6	168462626	rs12197610	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,7:33:8:0.875:2	./.	./.	./.	./.	./.	0/1:35,31:33:66:0.470:2	0/1:22,33:33:55:0.600:2	./.
chr6	168479604	rs34054991	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,6:33:15:0.400:2	0/1:7,6:31:13:0.462:2	0/1:0,6:31:6:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,48:31:48:1.00:2	0/1:18,14:30:32:0.438:2	0/1:17,11:30:28:0.393:2	0/1:0,33:31:33:1.00:2	0/1:11,22:31:33:0.667:2	0/1:0,17:32:17:1.00:2	0/1:0,13:31:13:1.00:2
chr6	168708751	rs10945499	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,14:28:24:0.583:2	0/1:10,8:30:18:0.444:2	./.	0/1:19,13:31:32:0.406:2	0/1:17,17:30:34:0.500:2	0/1:27,14:31:41:0.341:2	./.	0/1:13,22:30:35:0.629:2	0/1:15,9:29:24:0.375:2	./.	0/1:11,8:30:19:0.421:2
chr6	168708793	rs10945500	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,3:33:10:0.300:2	./.	./.	0/1:1,3:30:4:0.750:2	0/1:4,3:27:7:0.429:2	./.	./.	./.	0/1:6,3:32:9:0.333:2	./.	./.
chr6	168708816	rs10945501	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,3:31:8:0.375:2	0/1:6,3:32:9:0.333:2	./.	0/1:2,3:29:5:0.600:2	0/1:8,4:31:12:0.333:2	./.	./.
chr6	168709147	rs41266321	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,36:31:81:0.444:2	./.	./.	./.	./.	./.	./.	./.
chr6	168709209	rs192935251	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,11:31:19:0.579:2	./.	./.	./.	./.
chr6	168709385	rs6925614	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,8:30:15:0.533:2	./.	./.	0/1:6,7:32:13:0.538:2	0/1:11,7:33:18:0.389:2	0/1:9,8:31:17:0.471:2	./.	0/1:4,5:34:9:0.556:2	0/1:10,4:33:14:0.286:2	./.	./.
chr6	169621536	rs1132742	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:47,37:29:84:0.440:2	0/1:27,29:29:56:0.518:2	./.	0/1:70,63:28:133:0.474:2	./.	./.	./.	0/1:3,141:29:144:0.979:2	0/1:54,49:29:103:0.476:2	./.	./.
chr6	169622490	rs9505895	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:28,29:33:57:0.509:2	0/1:20,28:33:48:0.583:2	./.	0/1:60,54:32:114:0.474:2	./.	./.	./.	0/1:0,110:32:110:1.00:2	0/1:41,78:33:119:0.655:2	./.	./.
chr6	169632219	rs35935937	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,98:30:189:0.519:2	./.	./.	0/1:56,50:30:106:0.472:2
chr6	169634896	rs34987335	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,51:31:88:0.580:2
chr6	169637763	rs9766671	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,44:28:95:0.463:2	0/1:38,41:30:79:0.519:2	./.	./.	0/1:27,20:30:47:0.426:2
chr6	169641962	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,15:30:37:0.405:2	0/1:10,10:31:20:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	169641971	rs61730651	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:18,22:33:40:0.550:2	0/1:13,8:32:21:0.381:2	0/1:3,7:33:10:0.700:2	./.	0/1:15,33:32:48:0.688:2	./.	./.	./.	./.	0/1:18,17:32:35:0.486:2	./.
chr6	169648767	rs12178180	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,38:30:87:0.437:2	./.	./.	./.	./.	./.	./.
chr6	169648967	rs148267594	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,15:31:21:0.714:2	./.	./.	./.	./.	./.	./.	./.
chr6	170047902	rs61740334	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,32:30:54:0.593:2	./.	0/1:33,25:31:58:0.431:2	./.	./.	./.	./.
chr6	170052049	rs9478086	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,49:29:108:0.454:2	0/1:51,71:30:122:0.582:2	./.	./.	0/1:67,50:29:117:0.427:2
chr6	170058374	rs3800544	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,61:31:124:0.492:2	./.	./.	./.	./.	./.	./.
chr6	170058439	rs41265381	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,45:31:109:0.413:2	0/1:58,70:32:128:0.547:2	./.	./.	0/1:56,42:32:98:0.429:2
chr6	170059627	rs3823464	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,41:32:84:0.488:2	0/1:37,26:31:63:0.413:2	./.	./.	0/1:16,22:32:38:0.579:2
chr6	170068086	rs41265385	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,13:32:27:0.481:2	./.	./.	./.	./.	./.	./.
chr6	170068107	rs41265387	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,9:32:39:0.231:2	./.	./.	./.	./.	./.
chr6	170068180	rs3823465	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,54:32:105:0.514:2	0/1:62,43:33:105:0.410:2	./.	./.	./.	./.	./.
chr6	170070723	rs4236176	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,23:29:43:0.535:2	0/1:27,23:28:50:0.460:2	0/1:27,13:29:40:0.325:2	0/1:29,30:30:59:0.508:2	./.	./.	0/1:15,17:29:32:0.531:2
chr6	170103996	rs17860603	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,8:26:20:0.400:2	./.	./.	./.	./.	./.
chr6	170105110	rs41265395	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,37:29:54:0.685:2	./.	./.	./.	./.	./.
chr6	170105553	rs80250989	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,21:29:47:0.447:2	./.	./.	./.	./.	./.	./.
chr6	170105725	rs4286788	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,4:32:85:0.047:2	./.	./.	0/1:56,4:32:60:0.067:2	./.	./.	./.	./.
chr6	170116063	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:32:86:0.047:2	./.	./.	./.	./.
chr6	170117923	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:32:99:0.040:2	./.	0/1:130,4:32:134:0.030:2	./.	./.
chr6	170117924	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:126,4:32:130:0.031:2	./.	./.	0/1:95,4:30:99:0.040:2	./.	0/1:130,4:32:134:0.030:2	./.	./.
chr6	170118923	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:31:76:0.053:2	./.	./.	./.	./.
chr6	170143300	rs13194101	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,22:32:56:0.393:2	./.
chr6	170144194	rs2274954	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,19:29:29:0.655:2	./.	./.	./.	./.	./.	./.
chr6	170144340	rs368171737	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,9:33:33:0.273:2
chr6	170151766	rs3749882	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,32:28:32:1.00:2	0/1:21,35:29:56:0.625:2	./.	./.	./.	./.	./.
chr6	170155397	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:34:197:0.020:2	./.	./.	./.
chr6	170156465	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,50:32:131:0.382:2
chr6	170162537	rs11966349	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,65:31:65:1.00:2	./.	./.	./.	./.	./.	./.
chr6	170176125	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:182,4:32:186:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr6	170176146	rs41265401	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,50:32:123:0.407:2	./.	./.	./.	./.	./.	./.
chr6	170176467	rs4716345	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,142:32:143:0.993:2	0/1:89,41:33:130:0.315:2	0/1:92,62:33:154:0.403:2	0/1:100,77:32:177:0.435:2	./.	./.	0/1:50,41:33:91:0.451:2
chr6	170176647	rs4716399	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,108:31:108:1.00:2	0/1:45,44:31:89:0.494:2	0/1:76,46:31:122:0.377:2	0/1:57,35:31:92:0.380:2	./.	./.	0/1:40,33:31:73:0.452:2
chr6	170176648	rs4716346	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,107:31:107:1.00:2	0/1:45,44:31:89:0.494:2	0/1:76,47:31:123:0.382:2	0/1:60,35:31:95:0.368:2	./.	./.	0/1:40,33:30:73:0.452:2
chr6	170591923	rs1033583	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,5:33:13:0.385:2	0/1:41,41:33:82:0.500:2	0/1:20,23:33:43:0.535:2	./.	./.	0/1:38,36:33:74:0.486:2	./.	0/1:20,36:33:56:0.643:2	0/1:0,81:33:81:1.00:2
chr6	170592417	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,21:31:39:0.538:2	./.	./.	./.	./.
chr6	170592631	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,15:31:36:0.417:2	./.	./.	./.
chr6	170626943	rs3800266	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,60:32:118:0.508:2	./.	./.	./.	./.	./.	./.	0/1:56,38:32:94:0.404:2
chr6	170627586	rs6917485	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,34:30:46:0.739:2	./.	./.	./.	./.	./.	./.	0/1:20,25:32:45:0.556:2
chr6	170627614	rs6905356	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,36:30:57:0.632:2	./.	./.	./.	./.	./.	./.	0/1:24,27:30:51:0.529:2
chr6	170627651	rs9460113	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,50:32:50:1.00:2	0/1:0,22:29:22:1.00:2	./.	0/1:50,25:31:75:0.333:2	0/1:25,20:31:45:0.444:2	0/1:0,44:30:44:1.00:2	0/1:21,25:30:46:0.543:2	0/1:1,53:30:54:0.981:2	0/1:25,15:33:41:0.375:2	0/1:35,43:32:79:0.551:2	0/1:33,27:32:60:0.450:2
chr6	170627691	rs9348265	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,5:31:60:0.083:2
chr6	170627695	rs113032155	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,8:31:62:0.129:2
chr6	170627739	rs17860761	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,26:31:60:0.441:2	./.	./.	./.	./.	./.	./.	0/1:40,6:33:46:0.130:2
chr6	170627761	rs6900199	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,16:32:41:0.390:2	./.	./.	./.	./.	./.	./.	0/1:24,18:32:42:0.429:2
chr6	170627797	rs9366138	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,18:32:32:0.563:2	./.	./.	./.	./.	./.	./.	0/1:21,16:32:37:0.432:2
chr6	170627804	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,4:31:33:0.121:2	./.	./.	./.	./.	./.	./.	./.
chr6	170628009	rs9348266	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,33:33:59:0.559:2	./.	./.	./.	./.	./.	./.	0/1:42,47:32:89:0.528:2
chr6	170667319	rs41269639	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,56:31:107:0.528:2	0/1:31,25:30:56:0.446:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr6	170713682	rs9295407	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,30:32:30:1.00:2	./.	./.	./.	./.
chr6	170862300	rs12717	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,13:33:22:0.591:2	0/1:10,4:33:14:0.286:2	./.	./.	0/1:15,15:33:30:0.500:2	0/1:18,14:32:32:0.438:2	./.	0/1:22,28:32:50:0.560:2	0/1:26,6:35:32:0.188:2	0/1:16,8:32:24:0.333:2	./.
chr6	170871013	rs10558845	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,6:30:71:0.085:2	./.	./.	./.	./.	./.	./.
chr6	170871040	rs55736770	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:17,22:33:39:0.564:2	0/1:9,11:33:20:0.550:2	0/1:6,4:32:10:0.400:2	./.	0/1:43,5:23:48:0.104:2	0/1:45,8:32:53:0.151:2	./.	./.	0/1:15,7:31:22:0.318:2	./.	0/1:17,4:33:21:0.190:2
chr6	170871052	rs112083427	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:24,16:32:40:0.400:2	0/1:11,8:31:19:0.421:2	0/1:7,4:30:11:0.364:2	./.	./.	./.	./.	./.	0/1:12,6:30:19:0.333:2	./.	0/1:15,8:29:23:0.348:2
chr6	170871055	rs112928724	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,7:28:42:0.171:2	./.	./.	./.	./.	0/1:44,3:32:47:0.064:2	0/1:35,4:27:39:0.103:2	./.	./.	./.	./.
chr6	170871097	rs200496051	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:31:85:0.047:2	./.	./.	./.	./.	./.
chr6	170878793	rs1042327	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:35,41:33:76:0.539:2	0/1:14,11:32:25:0.440:2	0/1:2,2:33:4:0.500:2	./.	0/1:28,16:33:44:0.364:2	0/1:31,25:32:56:0.446:2	0/1:13,16:33:29:0.552:2	0/1:39,28:32:67:0.418:2	0/1:45,46:33:91:0.505:2	0/1:19,29:32:48:0.604:2	./.
chr7	197267	rs4916935	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,16:30:39:0.410:2	0/1:13,7:32:20:0.350:2	0/1:0,3:30:3:1.00:2	0/1:25,30:30:55:0.545:2	0/1:24,29:29:53:0.547:2	0/1:1,48:31:49:0.980:2	0/1:37,23:31:60:0.383:2	0/1:0,88:31:88:1.00:2	0/1:1,53:31:54:0.981:2	0/1:1,30:31:31:0.968:2	0/1:1,44:31:45:0.978:2
chr7	197428	rs62428649	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,37:31:78:0.474:2	./.	0/1:46,23:30:69:0.333:2	./.	0/1:61,51:30:112:0.455:2	0/1:42,37:31:79:0.468:2	0/1:25,40:31:65:0.615:2	./.
chr7	552046	rs1129401	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,61:29:128:0.477:2	./.	0/1:92,97:29:189:0.513:2	./.	./.	./.
chr7	618938	rs3211362	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,81:29:81:1.00:2	./.	./.	0/1:71,51:30:122:0.418:2	0/1:63,73:30:136:0.537:2	0/1:0,104:30:104:1.00:2	./.	0/1:56,47:30:103:0.456:2
chr7	624221	rs9330368	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:33:33:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,8:30:8:1.00:2	0/1:11,14:33:25:0.560:2	0/1:0,38:32:38:1.00:2	0/1:0,40:31:40:1.00:2	0/1:25,20:34:46:0.444:2	0/1:16,25:33:41:0.610:2	./.	0/1:0,41:33:41:1.00:2	0/1:27,9:32:36:0.250:2
chr7	642292	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:30:75:0.053:2	./.
chr7	720283	rs199568828	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,3:33:39:0.077:2
chr7	796430	rs73036225	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,5:33:9:0.556:2	0/1:20,24:33:44:0.545:2	0/1:42,33:33:75:0.440:2	0/1:0,56:32:56:1.00:2	./.	0/1:4,63:33:67:0.940:2	0/1:35,35:34:70:0.500:2	./.	./.
chr7	808810	rs6946758	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,23:31:23:1.00:2	0/1:0,8:32:8:1.00:2	./.	0/1:22,23:32:45:0.511:2	./.	./.	./.	./.	0/1:18,19:33:37:0.514:2	0/1:20,14:33:34:0.412:2	0/1:0,25:29:25:1.00:2
chr7	810148	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,32:32:82:0.390:2
chr7	810219	rs4720951	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:2,62:29:64:0.969:2	0/1:0,40:27:40:1.00:2	./.	0/1:69,47:29:116:0.405:2	./.	./.	./.	./.	0/1:38,39:29:77:0.506:2	0/1:40,21:27:61:0.344:2	0/1:0,47:27:47:1.00:2
chr7	814756	rs374069664	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:33:120:0.033:2	./.
chr7	814788	rs3922641	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,100:32:100:1.00:2	0/1:0,70:32:70:1.00:2	0/1:12,5:32:17:0.294:2	0/1:60,64:32:124:0.516:2	0/1:53,44:32:97:0.454:2	./.	0/1:81,46:32:127:0.362:2	./.	0/1:68,63:33:131:0.481:2	0/1:0,121:32:121:1.00:2	0/1:0,133:32:133:1.00:2
chr7	819760	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:32:171:0.024:2	./.	./.	./.	./.
chr7	881668	rs6461378	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:41,27:32:68:0.397:2	0/1:26,23:32:49:0.469:2	./.	0/1:1,111:31:112:0.991:2	./.	0/1:59,48:30:107:0.449:2	./.	./.	0/1:51,42:32:93:0.452:2	0/1:40,52:32:92:0.565:2	0/1:0,75:31:75:1.00:2
chr7	882895	rs6970511	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:12,6:34:18:0.333:2	0/1:7,5:33:12:0.417:2	./.	0/1:0,29:33:29:1.00:2	./.	0/1:10,12:32:22:0.545:2	./.	./.	0/1:19,4:34:23:0.174:2	0/1:11,3:34:14:0.214:2	0/1:0,23:31:23:1.00:2
chr7	883105	rs113652875	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,19:32:29:0.655:2	0/1:2,9:31:11:0.818:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	889169	rs74742245	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:101,82:33:183:0.448:2	0/1:53,45:33:98:0.459:2	./.	./.	0/1:112,82:32:194:0.423:2	./.	0/1:100,96:34:196:0.490:2	./.	./.	0/1:103,94:33:197:0.477:2	./.
chr7	897492	rs10950789	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:42,51:29:93:0.548:2	0/1:22,29:29:51:0.569:2	./.	./.	0/1:81,77:29:158:0.487:2	./.	0/1:0,138:29:138:1.00:2	./.	./.	0/1:45,48:29:93:0.516:2	./.
chr7	897496	rs59910530	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:43,51:32:94:0.543:2	0/1:21,29:32:50:0.580:2	./.	./.	0/1:71,73:30:144:0.507:2	./.	0/1:77,67:30:144:0.465:2	./.	./.	0/1:45,47:31:92:0.511:2	./.
chr7	899974	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:32:47:0.085:2	./.	./.
chr7	923886	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:101,4:30:105:0.038:2	./.	./.	./.	./.	./.	./.
chr7	925694	rs200535612	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,17:11:76:0.224:2	./.	0/1:60,11:13:71:0.155:2	0/1:48,20:11:68:0.294:2	./.	./.	./.
chr7	926827	rs4722203	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,78:31:78:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,89:31:91:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,51:31:51:1.00:2
chr7	930608	rs11543223	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,80:32:194:0.412:2	./.	./.	./.	./.
chr7	930689	rs13171	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:98,84:32:182:0.462:2	0/1:74,47:32:121:0.388:2	./.	./.	0/1:99,93:31:192:0.484:2	./.	0/1:120,77:31:197:0.391:2	./.	./.	0/1:88,83:31:171:0.485:2	./.
chr7	931960	rs11543218	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,26:31:58:0.448:2	./.	./.	./.	./.
chr7	939060	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:32:191:0.021:2	./.	./.	./.	./.	./.
chr7	940181	rs10256887	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,12:32:12:1.00:2	0/1:1,137:31:138:0.993:2	0/1:64,85:31:149:0.570:2	0/1:0,131:31:131:1.00:2	0/1:0,105:32:105:1.00:2	0/1:58,59:31:117:0.504:2	0/1:0,95:33:95:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,71:32:71:1.00:2
chr7	943868	rs61730955	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,53:31:120:0.442:2	0/1:34,29:31:63:0.460:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	959692	rs6962883	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,12:31:20:0.600:2	./.	./.	0/1:3,7:28:10:0.700:2	./.	./.	./.
chr7	1023013	rs2272375	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:32:6:0.667:2	0/1:0,4:29:4:1.00:2	./.	./.	./.	0/1:3,8:30:11:0.727:2	0/1:5,10:30:15:0.667:2	./.	0/1:4,6:33:10:0.600:2	0/1:0,4:32:4:1.00:2	./.
chr7	1024855	rs3735684	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,22:29:33:0.667:2	0/1:15,4:32:19:0.211:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	1028448	rs3808348	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	0/1:3,3:31:6:0.500:2	./.	./.	0/1:3,8:31:11:0.727:2	./.	./.	./.
chr7	1097947	rs55677825	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,12:30:27:0.444:2	./.
chr7	1097952	rs6953080	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,7:31:18:0.389:2	0/1:4,7:32:11:0.636:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	1098372	rs2293522	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:22,19:30:41:0.463:2	0/1:21,12:32:33:0.364:2	0/1:6,3:31:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	1098404	rs1047302	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,23:32:47:0.489:2	0/1:12,21:32:33:0.636:2	./.	0/1:26,25:32:51:0.490:2	0/1:26,33:32:59:0.559:2	0/1:29,29:32:58:0.500:2	0/1:34,19:31:53:0.358:2	0/1:34,35:32:69:0.507:2	0/1:18,22:33:40:0.550:2	./.	./.
chr7	1098518	rs2293523	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:47,29:32:76:0.382:2	0/1:39,19:31:59:0.328:2	./.	./.	0/1:25,12:29:37:0.324:2	./.	0/1:13,17:32:31:0.567:2	0/1:50,25:31:75:0.333:2	./.	./.	./.
chr7	1098554	rs73267962	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,17:34:31:0.548:2	./.
chr7	1098719	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,14:26:35:0.400:2	./.	./.	./.	./.	./.	./.	./.
chr7	1131394	rs34497267	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,35:28:58:0.603:2	./.	./.	./.	./.	./.
chr7	1132016	rs199736734	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,7:31:56:0.125:2	0/1:55,8:31:63:0.127:2	./.	0/1:30,7:28:37:0.189:2	0/1:51,8:30:59:0.136:2	./.	./.	./.
chr7	1132075	rs11977449	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,12:27:12:1.00:2	./.
chr7	1132153	rs3808352	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,7:29:15:0.467:2	./.	./.	./.	./.	./.
chr7	1132486	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:33:173:0.023:2	./.	./.	./.	./.
chr7	1132671	rs4266553	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,29:31:57:0.509:2	./.	./.	./.	./.	./.
chr7	1132720	rs12702047	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:11,5:29:16:0.313:2	0/1:0,7:30:7:1.00:2	./.	./.	0/1:6,15:28:22:0.714:2	./.	./.	0/1:17,9:29:26:0.346:2	./.	./.	./.
chr7	1132728	rs55965425	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,5:30:7:0.714:2	./.
chr7	1132972	rs3808353	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:45,36:32:81:0.444:2	0/1:14,13:31:27:0.481:2	0/1:9,7:32:16:0.438:2	./.	0/1:80,74:31:154:0.481:2	./.	./.	0/1:80,65:32:145:0.448:2	./.	./.	./.
chr7	1133171	rs3808354	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,29:31:46:0.630:2	./.	./.	./.	0/1:6,18:31:24:0.750:2	./.
chr7	1133305	rs1133043	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:17,20:31:38:0.541:2	0/1:10,13:29:23:0.565:2	0/1:0,6:31:6:1.00:2	./.	0/1:23,35:30:58:0.603:2	0/1:35,29:30:64:0.453:2	./.	0/1:40,25:30:65:0.385:2	./.	0/1:0,44:30:44:1.00:2	./.
chr7	1474799	rs67046940	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:22,13:30:35:0.371:2	0/1:10,9:32:19:0.474:2	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	0/1:35,27:32:62:0.435:2	./.	./.
chr7	1478495	rs4492283	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.	./.	./.	./.	./.	0/1:25,20:32:46:0.444:2	./.	./.
chr7	1481919	rs4236408	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:32:55:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,42:31:42:1.00:2
chr7	1482009	rs61744261	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,135:32:135:1.00:2	./.	./.	./.	./.	./.	./.
chr7	1482101	rs12540098	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,58:32:110:0.527:2
chr7	1484572	rs10435184	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.
chr7	1484683	rs185321945	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,5:31:6:0.833:2	./.	0/1:14,4:29:18:0.222:2	./.	./.	./.	./.
chr7	1488265	rs149008569	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,33:30:55:0.600:2	./.	./.	./.	./.	./.	./.	./.
chr7	1513306	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:35:91:0.044:2	./.	./.
chr7	1523691	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:31:46:0.087:2	./.	./.	./.	./.	./.
chr7	1526300	rs117508585	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,33:31:80:0.413:2	./.	./.	./.	./.	./.	./.
chr7	1533513	rs2251226	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,16:34:46:0.348:2	0/1:16,12:32:28:0.429:2	./.	0/1:36,27:33:63:0.429:2	0/1:0,46:32:46:1.00:2	./.	0/1:36,7:33:43:0.163:2	0/1:0,64:32:64:1.00:2	0/1:51,19:34:70:0.271:2	0/1:26,26:33:52:0.500:2	0/1:2,26:33:28:0.929:2
chr7	1538614	rs2289035	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,3:30:12:0.250:2	0/1:1,3:31:4:0.750:2	./.	0/1:7,3:29:10:0.300:2	0/1:0,16:29:16:1.00:2	./.	0/1:1,4:26:5:0.800:2	0/1:0,25:28:25:1.00:2	0/1:3,5:26:8:0.625:2	./.	0/1:0,2:30:2:1.00:2
chr7	1542697	rs3752714	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,24:30:40:0.600:2	0/1:15,12:31:27:0.444:2	0/1:2,6:32:8:0.750:2	0/1:18,19:31:37:0.514:2	0/1:0,29:29:29:1.00:2	./.	0/1:17,11:32:28:0.393:2	0/1:0,55:31:55:1.00:2	0/1:19,27:31:46:0.587:2	0/1:10,24:32:34:0.706:2	0/1:0,21:31:21:1.00:2
chr7	1542732	rs202230447	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,28:31:58:0.483:2	./.	./.	./.	./.	./.
chr7	1542814	rs3752715	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,19:28:68:0.279:2	0/1:25,17:27:42:0.405:2	./.	0/1:40,34:30:74:0.459:2	0/1:2,59:28:61:0.967:2	./.	0/1:32,39:28:71:0.549:2	0/1:1,90:29:91:0.989:2	0/1:30,31:30:61:0.508:2	0/1:42,38:29:80:0.475:2	0/1:0,90:29:90:1.00:2
chr7	1586662	rs3779607	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	1595005	rs183593116	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,30:31:62:0.484:2	./.	./.	./.	./.	./.
chr7	1595068	rs17852421	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:7,9:30:16:0.563:2	0/1:2,4:32:6:0.667:2	./.	./.	./.	./.	0/1:3,6:31:9:0.667:2	./.	./.	./.	0/1:0,5:25:5:1.00:2
chr7	1733102	rs4720922	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:95,93:30:188:0.495:2	0/1:99,92:31:191:0.482:2	0/1:0,44:30:45:1.00:2	./.	./.	./.	./.	./.	./.	0/1:105,91:31:196:0.464:2	./.
chr7	1733182	rs79496824	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:114,76:32:190:0.400:2	0/1:97,71:31:168:0.423:2	0/1:114,79:31:193:0.409:2	0/1:102,72:32:174:0.414:2	./.	./.	0/1:83,68:31:151:0.450:2
chr7	1733192	rs56130225	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:117,73:32:190:0.384:2	0/1:93,69:32:162:0.426:2	0/1:101,85:32:186:0.457:2	0/1:111,82:32:193:0.425:2	./.	./.	0/1:82,68:32:150:0.453:2
chr7	1733474	rs117250982	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,34:32:65:0.523:2	0/1:32,23:32:55:0.418:2	./.	./.	./.	./.	./.
chr7	1784430	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,5:29:151:0.033:2	./.	./.
chr7	1784763	rs377313701	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,19:32:41:0.463:2	0/1:13,24:33:37:0.649:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	1785738	rs61236605	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,3:29:5:0.600:2	./.	./.	0/1:4,5:31:9:0.556:2	./.	0/1:1,5:32:6:0.833:2	./.
chr7	1786818	rs76371074	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,18:29:26:0.692:2	./.	./.	./.	0/1:1,3:27:4:0.750:2
chr7	1786845	rs1534789	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,9:31:16:0.563:2	./.	./.	./.	./.
chr7	1786951	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,3:33:23:0.130:2	./.	./.
chr7	1787003	rs1534788	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,13:28:16:0.813:2	0/1:3,11:28:14:0.786:2	0/1:1,3:31:4:0.750:2	0/1:7,8:29:15:0.533:2	0/1:7,3:28:10:0.300:2	./.	./.	./.	0/1:0,29:29:29:1.00:2	0/1:10,5:31:15:0.333:2	./.
chr7	1787019	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,8:29:17:0.500:2	./.
chr7	1787175	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,4:31:27:0.148:2	./.	./.
chr7	1787236	rs9177	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,17:29:32:0.531:2	0/1:16,10:30:26:0.385:2	./.	0/1:11,25:29:36:0.694:2	0/1:21,17:28:38:0.447:2	./.	./.	./.	0/1:1,38:29:39:0.974:2	0/1:11,22:29:33:0.667:2	./.
chr7	1787574	rs3829824	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,14:32:35:0.400:2	0/1:11,6:32:17:0.353:2	0/1:0,3:31:3:1.00:2	0/1:22,12:31:34:0.353:2	0/1:0,12:31:12:1.00:2	0/1:25,24:31:49:0.490:2	0/1:13,9:29:22:0.409:2	0/1:0,11:31:11:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,19:32:19:1.00:2	0/1:38,31:32:69:0.449:2
chr7	1878377	rs3889573	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,171:32:185:0.924:2	0/1:13,165:32:178:0.927:2	0/1:6,59:32:65:0.908:2	0/1:108,79:33:187:0.422:2	0/1:23,156:33:179:0.872:2	0/1:9,180:32:189:0.952:2	0/1:112,83:33:195:0.426:2	0/1:112,86:32:198:0.434:2	0/1:100,83:32:183:0.454:2	0/1:91,91:32:182:0.500:2	0/1:105,83:32:188:0.441:2
chr7	1878453	rs1078112	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:98,94:32:192:0.490:2	0/1:94,94:32:188:0.500:2	0/1:3,70:32:73:0.959:2	./.	0/1:9,183:32:192:0.953:2	0/1:114,78:32:192:0.406:2	./.	0/1:106,89:32:195:0.456:2	0/1:107,86:33:193:0.446:2	./.	./.
chr7	1886937	rs6954673	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:47,56:32:103:0.544:2	0/1:26,33:32:59:0.559:2	0/1:0,17:32:17:1.00:2	./.	0/1:2,128:32:130:0.985:2	0/1:48,47:32:95:0.495:2	./.	0/1:83,50:32:133:0.376:2	0/1:51,64:33:115:0.557:2	./.	./.
chr7	1887037	rs73046334	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,50:30:108:0.463:2	./.	./.	0/1:83,47:29:130:0.362:2	0/1:72,42:28:114:0.368:2	0/1:62,33:31:95:0.347:2	0/1:38,44:28:83:0.537:2	0/1:59,28:30:88:0.322:2
chr7	1887362	rs6957894	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:14,16:32:30:0.533:2	0/1:19,5:33:24:0.208:2	0/1:0,4:32:4:1.00:2	./.	0/1:1,42:32:43:0.977:2	0/1:23,20:30:43:0.465:2	./.	0/1:12,21:33:33:0.636:2	0/1:15,20:34:35:0.571:2	./.	./.
chr7	1976457	rs1801368	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:7,21:29:28:0.750:2	0/1:5,12:31:17:0.706:2	0/1:0,3:30:3:1.00:2	0/1:25,28:30:53:0.528:2	0/1:1,89:30:90:0.989:2	0/1:19,28:30:47:0.596:2	./.	0/1:27,44:30:71:0.620:2	0/1:22,20:32:42:0.476:2	./.	./.
chr7	2020094	rs193231481	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,20:30:43:0.465:2	./.	./.	./.	./.	./.
chr7	2257612	rs6951493	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:95,94:32:189:0.497:2	0/1:71,82:32:154:0.536:2	0/1:0,44:31:44:1.00:2	0/1:89,95:31:184:0.516:2	0/1:97,82:32:179:0.458:2	0/1:3,173:31:176:0.983:2	./.	0/1:88,97:32:185:0.524:2	0/1:118,70:32:188:0.372:2	0/1:98,87:32:185:0.470:2	./.
chr7	2289636	rs35932242	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,45:31:89:0.506:2	./.	./.	./.	./.	./.	0/1:33,48:32:81:0.593:2	./.
chr7	2290522	rs1799832	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:19,19:32:38:0.500:2	0/1:16,10:31:26:0.385:2	./.	./.	./.	./.	0/1:55,32:31:87:0.368:2	./.	./.	./.	./.
chr7	2297006	rs6888	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:27:16:1.00:2	0/1:0,12:27:12:1.00:2	0/1:0,3:27:3:1.00:2	0/1:0,28:27:28:1.00:2	0/1:0,21:26:21:1.00:2	0/1:0,29:27:29:1.00:2	0/1:0,14:27:14:1.00:2	0/1:0,30:28:30:1.00:2	0/1:0,29:29:29:1.00:2	0/1:0,12:27:12:1.00:2	0/1:0,17:28:17:1.00:2
chr7	2303986	rs2286206	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:30:24:1.00:2	0/1:0,23:29:23:1.00:2	0/1:0,4:27:4:1.00:2	0/1:0,49:28:49:1.00:2	0/1:0,57:29:57:1.00:2	0/1:0,48:29:48:1.00:2	0/1:1,51:29:52:0.981:2	0/1:1,60:29:61:0.984:2	0/1:0,44:30:44:1.00:2	0/1:0,26:29:26:1.00:2	0/1:0,48:29:48:1.00:2
chr7	2349470	rs10479970	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,35:33:85:0.417:2	0/1:22,23:31:45:0.511:2	./.	./.	./.	0/1:0,110:32:111:1.00:2	./.	./.	0/1:54,71:34:125:0.568:2	0/1:35,35:33:70:0.500:2	0/1:50,39:31:89:0.438:2
chr7	2472429	rs3735099	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:32:7:0.571:2
chr7	2472455	rs3735100	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,7:31:20:0.350:2
chr7	2473757	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.
chr7	2473804	rs2969077	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:4,3:31:7:0.429:2	./.	0/1:2,5:30:7:0.714:2	./.	0/1:0,12:31:12:1.00:2	./.	./.	./.	./.	./.
chr7	2566028	rs12700028	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,8:32:14:0.571:2	./.	./.	./.	./.
chr7	2566484	rs61743870	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,35:30:62:0.565:2	./.	./.	./.	./.	./.
chr7	2577781	rs1043291	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,42:32:42:1.00:2	./.	0/1:0,63:33:63:1.00:2	0/1:38,20:33:58:0.345:2	./.	0/1:25,24:33:49:0.490:2	0/1:24,13:32:37:0.351:2	0/1:0,36:32:36:1.00:2
chr7	2578237	rs374879575	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:33:5:1.00:2	./.	./.	./.	./.	./.
chr7	2578371	rs56727079	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:34:3:0.667:2	./.	./.	./.	./.	./.
chr7	2582907	rs77213198	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,30:30:49:0.612:2	./.	./.	./.	./.	./.
chr7	2583328	rs61753095	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,9:32:24:0.375:2	./.	./.	./.	./.
chr7	2611867	rs11976972	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,30:30:49:0.612:2	./.	./.	./.	./.	./.
chr7	2611878	rs2917751	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,16:31:28:0.571:2	0/1:12,4:28:16:0.250:2	0/1:0,6:30:6:1.00:2	0/1:32,31:30:63:0.492:2	0/1:0,38:30:38:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,41:29:41:1.00:2	0/1:0,52:30:52:1.00:2	0/1:15,22:29:37:0.595:2	0/1:24,20:28:44:0.455:2	./.
chr7	2613042	rs2304540	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,28:33:68:0.412:2	0/1:23,17:33:40:0.425:2	0/1:0,8:32:8:1.00:2	0/1:49,12:32:61:0.197:2	0/1:0,42:32:42:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,38:32:38:1.00:2	0/1:67,42:33:109:0.385:2	0/1:42,21:33:63:0.333:2	./.
chr7	2613062	rs61739566	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:47,28:30:75:0.373:2	0/1:31,18:30:49:0.367:2	./.	0/1:56,21:31:77:0.273:2	./.	./.	./.	./.	./.	./.	./.
chr7	2613133	rs62442626	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:68,38:32:106:0.358:2	0/1:45,28:33:73:0.384:2	./.	0/1:80,43:32:123:0.350:2	./.	./.	./.	./.	./.	./.	./.
chr7	2621722	rs114629898	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,76:32:141:0.539:2	./.	./.	./.	./.	./.	./.	./.
chr7	2623351	rs13242369	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:29:3:1.00:2	./.	0/1:5,6:30:11:0.545:2	0/1:0,12:31:12:1.00:2	0/1:0,15:30:15:1.00:2	0/1:4,5:31:9:0.556:2	0/1:2,9:31:11:0.818:2	0/1:4,8:32:12:0.667:2	./.
chr7	2623911	rs61757091	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,94:32:188:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr7	2629729	rs61753096	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,21:29:41:0.512:2	0/1:17,5:29:22:0.227:2	./.	./.	./.	./.	./.	./.	0/1:27,31:29:58:0.534:2	./.	0/1:0,51:30:51:1.00:2
chr7	2636689	rs12700146	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:30:5:1.00:2	./.	./.	0/1:16,28:30:44:0.636:2	0/1:9,22:29:31:0.710:2	0/1:23,18:30:41:0.439:2	./.	./.	./.
chr7	2636735	rs111535426	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,46:30:89:0.517:2	./.	./.	./.	./.	./.	./.	./.
chr7	2636762	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:30:77:0.052:2	./.
chr7	2644519	rs2293404	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,31:29:78:0.397:2	0/1:40,56:30:96:0.583:2	0/1:39,35:30:74:0.473:2	0/1:41,42:30:83:0.506:2	0/1:60,70:30:130:0.538:2	0/1:23,40:29:63:0.635:2	0/1:23,29:30:52:0.558:2	./.
chr7	2644607	rs2293405	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,29:31:76:0.382:2	0/1:34,18:29:52:0.346:2	0/1:49,23:31:72:0.319:2	./.	0/1:11,23:31:34:0.676:2	0/1:16,18:31:34:0.529:2	./.
chr7	2645526	rs10950797	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,78:30:140:0.557:2	./.	./.	./.
chr7	2645552	rs2293407	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,23:31:84:0.274:2	0/1:43,21:29:64:0.328:2	0/1:44,24:30:68:0.353:2	./.	0/1:42,48:30:90:0.533:2	0/1:28,24:29:52:0.462:2	0/1:34,8:29:43:0.190:2	./.
chr7	2646796	rs61729413	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,33:32:50:0.660:2	0/1:15,22:32:37:0.595:2	0/1:24,19:31:43:0.442:2	./.	0/1:28,22:33:50:0.440:2	0/1:15,29:31:44:0.659:2	./.
chr7	2646950	rs1056568	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,11:30:28:0.393:2	0/1:7,9:30:16:0.563:2	0/1:17,9:32:26:0.346:2	0/1:15,10:31:25:0.400:2	0/1:16,24:30:40:0.600:2	0/1:8,5:32:13:0.385:2	0/1:7,6:32:13:0.462:2	./.
chr7	2649704	rs3735109	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:40,25:28:65:0.385:2	0/1:30,23:28:53:0.434:2	./.	0/1:83,49:28:132:0.371:2	0/1:62,66:28:128:0.516:2	0/1:61,64:28:125:0.512:2	0/1:79,83:28:162:0.512:2	0/1:95,90:28:185:0.486:2	0/1:77,41:29:118:0.347:2	0/1:55,42:27:97:0.433:2	./.
chr7	2649715	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:32:188:0.021:2	./.	./.	./.	./.
chr7	2649777	rs1061566	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:59,38:31:98:0.392:2	0/1:27,32:32:59:0.542:2	./.	0/1:96,84:31:180:0.467:2	./.	./.	./.	./.	./.	./.	./.
chr7	2686861	rs199819544	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:33:9:0.556:2	./.	./.	./.	./.	./.	./.	./.
chr7	2698634	rs12672030	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,66:28:115:0.574:2	./.	./.	./.	./.	./.	./.
chr7	2742363	rs149317306	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,10:30:27:0.370:2	0/1:13,11:30:24:0.458:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	2748758	rs59438885	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,24:29:51:0.471:2	0/1:47,28:29:75:0.373:2	./.	./.	./.	./.	./.
chr7	2748803	rs58726146	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,28:29:29:0.966:2	0/1:23,20:30:43:0.465:2	./.	./.	./.	./.	./.
chr7	2752152	rs798565	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:32:13:0.538:2	0/1:3,6:32:9:0.667:2	./.	./.	./.	0/1:16,7:31:23:0.304:2	./.	./.	0/1:10,11:33:21:0.524:2	0/1:14,5:32:19:0.263:2	0/1:12,7:32:19:0.368:2
chr7	2752456	rs145687592	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,38:33:79:0.481:2
chr7	2752487	rs7776970	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,3:31:14:0.214:2	0/1:45,26:29:71:0.366:2	0/1:48,24:31:72:0.333:2	./.	0/1:0,63:31:63:1.00:2	0/1:52,31:31:83:0.373:2	0/1:55,20:32:75:0.267:2	./.	./.
chr7	2802522	rs798488	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,7:33:10:0.700:2	./.	./.	./.	./.	0/1:9,3:31:12:0.250:2	./.	./.	0/1:5,3:30:8:0.375:2	./.	./.
chr7	2854010	rs2644275	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,19:31:39:0.487:2	0/1:23,14:30:37:0.378:2	./.	./.	./.	0/1:0,54:29:54:1.00:2	./.	./.	0/1:40,21:31:61:0.344:2	0/1:26,24:30:50:0.480:2	0/1:41,26:31:67:0.388:2
chr7	2946461	rs1124581	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:52,33:31:85:0.388:2	0/1:24,19:31:43:0.442:2	./.	./.	0/1:0,79:31:79:1.00:2	0/1:1,94:31:95:0.989:2	0/1:61,42:31:103:0.408:2	0/1:80,51:33:131:0.389:2	./.	./.	0/1:2,36:31:38:0.947:2
chr7	2951824	rs2301921	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,85:30:195:0.436:2	./.	./.	./.	./.	./.	./.	./.
chr7	2957005	rs3735124	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:16,14:30:30:0.467:2	0/1:8,4:29:12:0.333:2	./.	0/1:5,6:30:11:0.545:2	./.	0/1:10,14:31:24:0.583:2	./.	./.	./.	./.	0/1:14,9:26:23:0.391:2
chr7	2959172	rs3735126	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,65:32:149:0.436:2	./.	./.	./.	./.	./.	./.	./.
chr7	2962293	rs3735131	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,60:32:127:0.472:2	./.	./.	./.	./.	./.	./.	./.
chr7	2966445	rs1182136	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,26:32:49:0.531:2	0/1:30,24:31:54:0.444:2	./.	0/1:1,54:32:55:0.982:2	0/1:1,88:32:89:0.989:2	0/1:55,32:33:87:0.368:2	0/1:2,81:32:83:0.976:2	0/1:65,34:32:100:0.343:2	0/1:0,50:32:50:1.00:2	0/1:50,32:33:82:0.390:2	0/1:29,35:30:64:0.547:2
chr7	2968245	rs75403455	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,25:31:45:0.556:2	./.	./.	./.	./.	./.	./.
chr7	2969680	rs1621509	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:30:10:0.500:2	./.	./.	./.	0/1:43,32:31:75:0.427:2	./.	0/1:0,54:30:54:1.00:2	0/1:27,20:32:47:0.426:2	./.
chr7	2976767	rs6945582	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,12:31:24:0.500:2	./.	./.	./.	./.	./.	./.	0/1:87,62:32:149:0.416:2	./.
chr7	2985543	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:33:43:0.093:2	./.
chr7	3197788	rs73672278	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:29:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	3197867	rs4634530	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:29:17:1.00:2	0/1:0,11:28:11:1.00:2	./.	0/1:19,19:29:38:0.500:2	0/1:18,10:27:28:0.357:2	0/1:17,16:28:33:0.485:2	./.	0/1:20,18:29:38:0.474:2	./.	0/1:0,28:28:28:1.00:2	./.
chr7	4008929	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:33:145:0.028:2	./.	./.
chr7	4014022	rs6977582	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,49:31:88:0.557:2	./.	./.	./.	./.	./.	./.	./.
chr7	4026944	rs7785899	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,49:32:103:0.476:2	./.	./.	./.	./.	./.	./.	0/1:65,47:33:113:0.420:2
chr7	4116665	rs11978101	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,34:30:71:0.479:2	./.	./.	./.	0/1:64,33:30:97:0.340:2	./.	0/1:36,26:29:62:0.419:2	0/1:18,30:29:48:0.625:2
chr7	4150312	rs6980076	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,53:32:116:0.457:2	./.	./.	./.	./.	./.	./.	./.
chr7	4153824	rs2141076	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,12:31:37:0.324:2	0/1:17,11:31:28:0.393:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	4172006	rs13224870	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,16:32:48:0.333:2	0/1:14,12:33:26:0.462:2	./.	0/1:26,25:31:51:0.490:2	0/1:31,27:31:58:0.466:2	0/1:30,38:32:68:0.559:2	0/1:38,38:32:76:0.500:2	./.	0/1:0,63:33:63:1.00:2	./.	0/1:34,20:32:54:0.370:2
chr7	4189075	rs659182	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,29:32:29:1.00:2	0/1:0,21:32:21:1.00:2	./.	0/1:3,68:32:72:0.958:2	0/1:44,46:32:90:0.511:2	0/1:0,90:32:90:1.00:2	0/1:49,49:33:98:0.500:2	0/1:46,39:32:85:0.459:2	0/1:23,19:33:42:0.452:2	0/1:15,27:31:42:0.643:2	0/1:12,15:29:27:0.556:2
chr7	4213877	rs601424	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,51:30:52:0.981:2	0/1:1,37:29:38:0.974:2	./.	0/1:59,28:29:87:0.322:2	0/1:45,47:30:92:0.511:2	0/1:0,86:30:86:1.00:2	0/1:59,47:29:106:0.443:2	0/1:4,84:29:88:0.955:2	0/1:53,14:29:67:0.209:2	./.	0/1:0,87:29:87:1.00:2
chr7	4213940	rs671756	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,46:29:46:1.00:2	0/1:1,29:29:30:0.967:2	./.	0/1:51,34:28:85:0.400:2	0/1:61,37:30:98:0.378:2	0/1:0,72:28:72:1.00:2	0/1:60,48:29:108:0.444:2	0/1:2,87:30:89:0.978:2	0/1:54,30:30:85:0.357:2	./.	0/1:0,89:30:89:1.00:2
chr7	4213975	rs671694	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,48:30:48:1.00:2	0/1:0,28:30:28:1.00:2	./.	0/1:1,72:30:73:0.986:2	0/1:52,25:29:77:0.325:2	0/1:0,49:30:49:1.00:2	0/1:46,44:29:90:0.489:2	0/1:0,76:30:76:1.00:2	0/1:40,31:31:71:0.437:2	0/1:27,32:31:59:0.542:2	0/1:0,73:29:73:1.00:2
chr7	4247821	rs199589804	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:30,7:17:37:0.189:2	./.	./.	./.	0/1:49,17:13:67:0.258:2	./.	./.	0/1:48,15:10:63:0.238:2	./.	./.	./.
chr7	4267047	rs17134638	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,43:33:82:0.524:2	./.	./.	./.	0/1:70,20:32:90:0.222:2	./.	./.	./.
chr7	4267072	rs597636	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,25:31:58:0.431:2	0/1:30,20:32:50:0.400:2	0/1:0,7:28:7:1.00:2	0/1:37,37:31:74:0.500:2	0/1:0,35:30:35:1.00:2	0/1:42,23:29:65:0.354:2	./.	./.	./.	0/1:0,45:30:45:1.00:2	0/1:27,42:32:69:0.609:2
chr7	4267078	rs116729563	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,29:31:65:0.446:2	./.	./.	./.	0/1:42,9:30:51:0.176:2	./.	./.	./.
chr7	4308362	rs8514	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:64,57:32:121:0.471:2	0/1:52,48:33:100:0.480:2	0/1:12,15:32:27:0.556:2	./.	./.	0/1:82,74:32:156:0.474:2	./.	./.	./.	0/1:54,76:32:130:0.585:2	0/1:88,70:32:158:0.443:2
chr7	4780514	rs3087749	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:32:33:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,3:32:3:1.00:2	0/1:44,20:30:64:0.313:2	0/1:0,63:30:63:1.00:2	0/1:41,37:31:78:0.474:2	./.	0/1:46,32:31:79:0.410:2	0/1:34,36:32:70:0.514:2	./.	./.
chr7	4801862	rs148135152	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,15:31:36:0.417:2	./.	./.	./.
chr7	4802029	rs6976790	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,17:29:17:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,3:34:3:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,19:33:19:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,11:31:11:1.00:2
chr7	4802035	rs1053753	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,20:32:37:0.541:2	./.	./.	./.	./.	./.	./.	0/1:8,3:33:11:0.273:2
chr7	4802065	rs62453207	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,5:30:11:0.455:2	./.	./.	./.	./.	./.
chr7	4821300	rs11549839	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:32:13:0.308:2	./.	./.	./.	./.	./.	./.	./.	0/1:20,18:31:38:0.474:2
chr7	4821352	rs11549840	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:32:15:0.571:2	./.	./.	./.	./.	./.	./.	./.	0/1:27,17:32:44:0.386:2
chr7	4825305	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.
chr7	4825945	rs117666541	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:32:9:0.444:2	./.	./.	./.	./.	./.	./.	./.	0/1:38,32:31:70:0.457:2
chr7	4826014	rs371998214	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,53:30:124:0.427:2
chr7	4827330	rs17135128	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:31:10:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	4827859	rs77890266	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:32:7:0.857:2	./.	./.	./.	./.	./.	./.	./.	0/1:33,24:33:57:0.421:2
chr7	4828548	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,7:32:15:0.467:2
chr7	4830188	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:31:111:0.036:2	./.	./.	./.	./.
chr7	4830971	rs77393809	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:33:5:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:10,6:32:16:0.375:2
chr7	4839882	rs3816854	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,12:29:46:0.261:2	./.
chr7	4841313	rs6966329	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:32:9:0.444:2	./.	./.	./.	./.	./.	./.	./.	0/1:19,11:29:30:0.367:2
chr7	4841470	rs414035	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,6:30:6:1.00:2	0/1:0,3:27:3:1.00:2	0/1:0,2:28:2:1.00:2	0/1:0,7:29:7:1.00:2	./.	0/1:0,10:27:10:1.00:2	0/1:0,3:28:3:1.00:2	0/1:0,4:25:4:1.00:2	0/1:0,4:26:4:1.00:2	0/1:0,4:26:4:1.00:2	0/1:0,4:31:4:1.00:2
chr7	4841614	rs117943885	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:30:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:17,21:31:38:0.553:2
chr7	4843307	rs187128776	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:25,26:30:51:0.510:2
chr7	4845312	rs2306919	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,9:31:10:0.900:2	./.	./.	./.	0/1:20,18:31:38:0.474:2	./.	./.	./.	0/1:19,4:34:23:0.174:2
chr7	4874250	rs76862906	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,26:32:48:0.553:2	./.
chr7	4874334	rs75074289	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,48:32:95:0.505:2	./.
chr7	4874420	rs2292498	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:29:7:0.714:2	./.	./.	0/1:21,23:26:44:0.523:2	0/1:19,14:26:33:0.424:2	0/1:26,24:26:50:0.480:2	./.	./.	./.
chr7	4876057	rs3763384	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:30:9:0.333:2	./.	./.	0/1:19,13:31:32:0.406:2	0/1:15,11:30:26:0.423:2	0/1:17,18:31:35:0.514:2	./.	./.	./.
chr7	4876064	rs150209652	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:32:9:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	4876100	rs138811640	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	4900095	rs1553960	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,5:32:15:0.333:2	./.	./.	0/1:61,39:33:100:0.390:2	0/1:51,53:33:104:0.510:2	0/1:57,65:33:122:0.533:2	0/1:62,60:33:122:0.492:2	0/1:53,73:33:126:0.579:2	./.
chr7	4900230	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:31:151:0.026:2	./.	./.	./.
chr7	4900248	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:31:150:0.027:2	./.	./.	./.
chr7	4900341	rs17135247	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,46:31:94:0.489:2	0/1:78,49:32:128:0.386:2	./.	./.
chr7	4901191	rs3750010	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,23:31:55:0.418:2	0/1:19,19:33:38:0.500:2	./.	./.	0/1:26,24:31:50:0.480:2	./.
chr7	4901385	rs3750009	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,5:33:11:0.455:2	0/1:13,9:31:22:0.409:2	0/1:9,13:30:22:0.591:2	0/1:13,5:32:18:0.278:2	0/1:3,6:30:9:0.667:2	./.
chr7	4917729	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,25:32:57:0.439:2	0/1:19,5:32:24:0.208:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	4959807	rs932061	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,15:30:15:1.00:2	0/1:0,9:31:9:1.00:2	./.	0/1:0,9:30:9:1.00:2	0/1:2,4:30:6:0.667:2	0/1:4,7:30:11:0.636:2	0/1:11,6:30:17:0.353:2	0/1:25,6:31:31:0.194:2	./.	0/1:8,3:32:11:0.273:2	./.
chr7	5096958	rs11975068	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,36:32:82:0.439:2	./.	./.	0/1:0,119:32:119:1.00:2	./.	0/1:66,63:32:129:0.488:2	./.
chr7	5097381	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:161,5:28:166:0.030:2	0/1:155,9:31:164:0.055:2	0/1:165,4:31:169:0.024:2	0/1:156,6:32:162:0.037:2	./.	./.	./.	./.
chr7	5104275	rs12674330	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,12:32:22:0.545:2	./.	./.	0/1:20,6:33:26:0.231:2	./.	./.	./.
chr7	5104359	rs12668616	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,15:32:21:0.714:2	./.	./.	0/1:22,17:32:39:0.436:2	./.	./.	./.
chr7	5105133	rs12334144	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,22:32:46:0.478:2	0/1:23,13:32:36:0.361:2	./.	0/1:0,49:31:49:1.00:2	0/1:14,10:32:24:0.417:2	0/1:32,30:31:62:0.484:2	0/1:15,13:33:28:0.464:2	0/1:0,43:32:43:1.00:2	./.	0/1:0,46:33:46:1.00:2	./.
chr7	5105208	rs36026500	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,6:31:14:0.429:2	./.	./.	0/1:13,11:32:24:0.458:2	./.	./.	./.
chr7	5112108	rs6862	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:4,7:32:11:0.636:2	./.	./.	0/1:0,20:30:20:1.00:2	./.	0/1:14,6:30:20:0.300:2	0/1:6,8:29:14:0.571:2	0/1:18,9:31:27:0.333:2	./.	0/1:0,6:31:6:1.00:2	./.
chr7	5112554	rs1130329	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:16,4:30:20:0.200:2	0/1:6,4:28:10:0.400:2	./.	0/1:0,13:31:13:1.00:2	./.	0/1:16,5:27:21:0.238:2	0/1:13,4:29:17:0.235:2	0/1:17,11:30:28:0.393:2	./.	0/1:16,5:32:21:0.238:2	./.
chr7	5112768	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:31:48:0.085:2	./.	./.
chr7	5239232	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:33:173:0.023:2
chr7	5254227	rs4587243	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,118:32:118:1.00:2	0/1:0,98:33:98:1.00:2	0/1:0,35:32:35:1.00:2	0/1:76,61:33:137:0.445:2	0/1:0,160:32:160:1.00:2	0/1:0,132:32:132:1.00:2	0/1:0,166:33:166:1.00:2	0/1:0,178:32:178:1.00:2	0/1:0,149:33:149:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,134:33:134:1.00:2
chr7	5257573	rs1134489	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,83:32:170:0.488:2	./.	./.	./.	./.	./.
chr7	5266933	rs78789321	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,6:20:24:0.250:2	./.	./.	./.	./.	./.	./.	./.
chr7	5338693	rs11761173	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,13:31:16:0.813:2	0/1:9,3:31:13:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,5:30:8:0.625:2
chr7	5338714	rs6950111	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.
chr7	5340060	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,4:32:32:0.125:2	./.	./.
chr7	5340138	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,7:30:144:0.049:2	0/1:126,6:30:132:0.045:2	./.	./.	./.	./.
chr7	5342474	rs149588788	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,59:32:112:0.527:2	./.	./.	./.
chr7	5347746	rs62441157	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,28:27:66:0.424:2	./.
chr7	5347749	rs9639976	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,32:31:60:0.533:2	0/1:20,18:31:38:0.474:2	./.	0/1:2,75:30:77:0.974:2	0/1:0,98:31:98:1.00:2	./.	./.	./.	0/1:37,32:32:69:0.464:2	0/1:37,37:30:74:0.500:2	./.
chr7	5347767	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,5:30:183:0.027:2	./.	./.	./.
chr7	5347914	rs11554710	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,184:30:186:0.989:2	0/1:93,74:30:167:0.443:2	./.	./.	./.	0/1:104,91:31:196:0.467:2	./.	./.
chr7	5348870	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.	./.	./.
chr7	5352659	rs138591330	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	0/1:0,2:31:2:1.00:2	./.	0/1:0,4:28:4:1.00:2	./.	./.	./.
chr7	5352949	rs76882791	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,4:27:4:1.00:2	./.	./.	./.	./.	./.	0/1:8,3:29:11:0.273:2	./.	./.	./.
chr7	5353061	rs188607046	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,56:32:92:0.609:2	./.	./.
chr7	5353217	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,5:31:17:0.294:2
chr7	5353253	rs140781391	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:13,16:32:29:0.552:2	0/1:4,10:32:14:0.714:2	./.	./.	./.	./.	0/1:13,13:30:26:0.500:2	./.	./.	./.	0/1:9,13:30:22:0.591:2
chr7	5353344	rs12532973	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	5353449	rs191307109	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:28:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	5363981	rs7798005	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,22:32:39:0.564:2	./.	./.
chr7	5391702	rs3801048	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,20:32:46:0.444:2	0/1:25,4:30:29:0.138:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	5396715	rs35508364	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,81:31:81:1.00:2	0/1:1,61:32:62:0.984:2	0/1:8,4:31:12:0.333:2	./.	0/1:51,47:32:98:0.480:2	./.	0/1:45,49:32:94:0.521:2	./.	./.	./.	0/1:67,58:32:125:0.464:2
chr7	5399044	rs12531309	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:25,17:27:42:0.405:2	0/1:22,9:29:31:0.290:2	./.	./.	0/1:49,43:29:92:0.467:2	./.	0/1:65,45:30:110:0.409:2	./.	./.	./.	0/1:31,42:27:73:0.575:2
chr7	5410013	rs200279443	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,12:32:27:0.444:2	./.	./.	./.
chr7	5410425	rs12671708	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,14:31:14:1.00:2	0/1:0,8:31:8:1.00:2	./.	./.	./.	./.	0/1:2,6:32:8:0.750:2	0/1:8,7:32:15:0.467:2	0/1:1,8:30:9:0.889:2	./.	0/1:1,5:33:6:0.833:2
chr7	5410863	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	5416514	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:140,4:31:144:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr7	5427652	rs4720623	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,14:32:28:0.500:2	./.	./.	0/1:14,23:30:37:0.622:2	./.	./.	0/1:15,9:28:24:0.375:2
chr7	5427720	rs4724663	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,5:32:5:1.00:2	0/1:0,8:31:8:1.00:2	./.	0/1:0,11:32:11:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,9:32:9:1.00:2
chr7	5434135	rs4724668	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,79:33:80:0.988:2	0/1:0,49:32:49:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,157:32:157:1.00:2	0/1:2,121:31:123:0.984:2	0/1:0,142:31:142:1.00:2	0/1:68,36:33:104:0.346:2	0/1:103,62:31:166:0.376:2	0/1:93,38:33:131:0.290:2	0/1:84,45:32:129:0.349:2	0/1:0,79:31:79:1.00:2
chr7	5460755	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr7	5487423	rs72577279	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:32:15:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	5487458	rs4236392	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,32:29:56:0.571:2	0/1:20,13:29:33:0.394:2	0/1:0,8:29:8:1.00:2	0/1:0,92:30:92:1.00:2	0/1:0,77:29:77:1.00:2	0/1:0,65:30:65:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,82:29:82:1.00:2	0/1:0,62:31:62:1.00:2	0/1:1,63:30:64:0.984:2	0/1:0,74:28:74:1.00:2
chr7	5521468	rs10951956	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:32:10:0.500:2	./.	./.	./.	0/1:55,38:31:93:0.409:2	0/1:56,45:32:101:0.446:2	0/1:42,44:33:86:0.512:2	./.	./.
chr7	5529513	rs149457829	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,17:31:24:0.708:2	0/1:9,10:32:19:0.526:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	5529758	rs28566736	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,10:30:13:0.769:2	0/1:1,92:29:94:0.989:2	0/1:0,83:29:83:1.00:2	0/1:0,94:29:95:1.00:2	./.	0/1:57,77:31:134:0.575:2	./.	0/1:34,37:30:71:0.521:2	0/1:49,43:29:92:0.467:2
chr7	5530954	rs11975313	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,19:31:35:0.543:2	0/1:26,14:29:40:0.350:2	0/1:14,11:31:25:0.440:2	./.	./.
chr7	5540769	rs6953642	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,14:28:35:0.400:2	0/1:14,12:30:26:0.462:2	0/1:0,14:27:14:1.00:2	0/1:0,56:29:56:1.00:2	0/1:0,54:28:54:1.00:2	0/1:0,66:29:66:1.00:2	0/1:0,35:28:35:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,25:29:25:1.00:2	0/1:0,17:28:17:1.00:2
chr7	5540937	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:31:79:0.051:2	./.	./.
chr7	5541009	rs12667381	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:31:11:0.364:2	./.	./.	./.	0/1:58,64:30:122:0.525:2	0/1:51,45:31:96:0.469:2	0/1:40,41:32:81:0.506:2	./.	./.
chr7	5541657	rs4724704	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,14:30:14:1.00:2	0/1:2,120:30:123:0.984:2	0/1:1,147:29:148:0.993:2	0/1:0,107:29:107:1.00:2	0/1:47,77:30:124:0.621:2	0/1:0,113:29:113:1.00:2	0/1:43,45:29:89:0.511:2	0/1:33,38:29:71:0.535:2	0/1:20,26:31:46:0.565:2
chr7	5545119	rs34161358	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,54:32:103:0.524:2	./.	./.	./.
chr7	5567389	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:35:174:0.023:2	./.	./.	./.	./.
chr7	5567677	rs11546939	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,52:30:113:0.460:2
chr7	5568819	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,6:26:108:0.056:2	./.	./.	./.	./.
chr7	5568830	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,6:26:97:0.062:2	./.	./.	./.	./.
chr7	5568846	.	C	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:34:143:0.028:2	0/1:84,9:28:93:0.097:2	0/1:136,7:32:143:0.049:2	0/1:106,4:35:110:0.036:2	0/1:104,4:34:108:0.037:2	0/1:85,4:31:89:0.045:2
chr7	5569225	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	5633210	rs61732760	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr7	5643145	rs1640233	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,70:31:148:0.473:2	0/1:50,47:32:97:0.485:2	./.	./.
chr7	5644942	rs17850070	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,57:31:115:0.496:2	0/1:36,27:31:63:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	5922222	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:32:140:0.029:2
chr7	5941343	rs147443489	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:121,35:28:157:0.224:2	0/1:70,25:28:95:0.263:2	./.	./.	0/1:34,47:27:81:0.580:2	./.	./.	./.	./.	0/1:95,56:30:151:0.371:2	0/1:125,54:28:179:0.302:2
chr7	5941354	rs62453577	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:100,42:31:142:0.296:2	0/1:70,22:32:92:0.239:2	./.	./.	0/1:18,35:30:53:0.660:2	0/1:91,48:31:139:0.345:2	./.	./.	0/1:89,48:32:137:0.350:2	0/1:90,54:32:145:0.375:2	./.
chr7	5944844	rs143367105	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:44,13:30:57:0.228:2	0/1:161,36:30:197:0.183:2	0/1:152,39:28:191:0.204:2	./.	0/1:163,33:30:196:0.168:2	0/1:171,29:29:200:0.145:2	./.	0/1:112,77:30:189:0.407:2	0/1:167,25:29:192:0.130:2
chr7	5944895	rs199692089	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:147,29:30:176:0.165:2	./.	./.	./.	./.	./.	./.
chr7	5949726	rs1138495	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:159,31:32:190:0.163:2	0/1:104,19:32:123:0.154:2	./.	0/1:98,55:32:153:0.359:2	0/1:98,38:32:136:0.279:2	0/1:134,44:33:178:0.247:2	0/1:71,39:32:110:0.355:2	0/1:92,103:32:195:0.528:2	0/1:105,47:33:152:0.309:2	0/1:166,7:32:173:0.040:2	0/1:145,44:32:189:0.233:2
chr7	5951568	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:164,29:31:194:0.150:2	./.	./.	./.	./.	./.	./.
chr7	5959485	rs200812052	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:37,18:30:55:0.327:2	0/1:84,109:30:193:0.565:2	0/1:92,100:29:192:0.521:2	./.	0/1:143,54:30:197:0.274:2	0/1:166,31:30:197:0.157:2	./.	0/1:49,138:30:187:0.738:2	./.
chr7	5959592	rs192141490	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,11:33:180:0.061:2	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:32:193:0.026:2	./.
chr7	5959595	rs148556585	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:157,5:30:162:0.031:2	0/1:170,11:32:181:0.061:2	./.	./.	./.	./.	./.	./.	./.	0/1:187,5:32:192:0.026:2	./.
chr7	5965258	rs201118476	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:161,39:29:200:0.195:2	0/1:153,44:31:197:0.223:2	./.	0/1:163,33:32:196:0.168:2	0/1:93,104:32:197:0.528:2	0/1:152,46:31:198:0.232:2	0/1:163,34:31:197:0.173:2
chr7	5965288	rs138347457	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:151,44:32:195:0.226:2	./.	./.	0/1:172,24:33:196:0.122:2	0/1:103,93:32:196:0.474:2	./.	./.	./.
chr7	5965334	rs150333500	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:157,39:33:196:0.199:2	0/1:145,49:32:194:0.253:2	0/1:91,79:32:170:0.465:2	0/1:135,58:33:193:0.301:2	0/1:146,53:32:199:0.266:2	0/1:153,43:33:196:0.219:2	0/1:101,93:33:195:0.479:2	0/1:121,77:33:198:0.389:2	0/1:157,41:34:198:0.207:2	./.	./.
chr7	5967925	rs141918299	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:121,48:33:169:0.284:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	5972412	rs201048235	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,37:32:196:0.189:2	0/1:157,40:32:197:0.203:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,19:34:192:0.099:2
chr7	5974755	rs199968167	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,47:31:195:0.241:2	./.	./.	0/1:150,47:32:197:0.239:2	0/1:151,45:31:196:0.230:2	./.	./.	0/1:142,48:32:190:0.253:2
chr7	5983012	rs150999559	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,180:29:181:0.994:2	0/1:2,164:29:166:0.988:2	0/1:0,88:30:88:1.00:2	0/1:110,81:30:191:0.424:2	0/1:59,135:29:194:0.696:2	0/1:105,91:29:196:0.464:2	0/1:95,97:29:192:0.505:2	0/1:105,92:29:197:0.467:2	0/1:113,84:31:197:0.426:2	0/1:35,155:29:190:0.816:2	0/1:62,128:29:190:0.674:2
chr7	5983063	rs148485394	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,96:31:192:0.500:2	0/1:94,96:31:190:0.505:2	./.	./.	./.	0/1:149,48:30:197:0.244:2	./.	0/1:142,51:30:193:0.264:2	0/1:108,88:32:196:0.449:2	0/1:164,31:32:195:0.159:2	./.
chr7	5983070	rs144996986	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:140,54:33:194:0.278:2	./.	./.	0/1:137,52:33:189:0.275:2	0/1:149,48:33:197:0.244:2	0/1:144,54:34:198:0.273:2	./.	0/1:159,37:33:196:0.189:2
chr7	5983092	rs201187545	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,17:33:190:0.089:2	0/1:164,16:32:180:0.089:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,21:33:195:0.108:2
chr7	5983553	rs80120223	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,93:32:93:1.00:2	0/1:2,56:32:58:0.966:2	0/1:0,23:32:23:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,85:31:85:1.00:2	0/1:90,39:31:129:0.302:2	0/1:0,47:33:47:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,100:33:100:1.00:2	0/1:0,114:32:114:1.00:2	0/1:105,92:32:197:0.467:2
chr7	5983568	rs151020252	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,99:32:197:0.503:2
chr7	5983632	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:31:162:0.025:2	./.	./.
chr7	5984721	rs201017159	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:159,34:31:193:0.176:2	0/1:153,32:32:185:0.173:2	0/1:99,22:32:121:0.182:2	./.	0/1:166,33:31:199:0.166:2	0/1:166,33:31:199:0.166:2	./.	./.	0/1:163,32:32:196:0.164:2	./.	./.
chr7	5987996	rs200941935	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:55,138:33:193:0.715:2	0/1:48,143:33:191:0.749:2	0/1:21,39:33:60:0.650:2	./.	0/1:55,140:32:195:0.718:2	0/1:101,92:32:193:0.477:2	0/1:162,34:33:196:0.173:2	0/1:92,86:33:178:0.483:2	0/1:63,129:34:192:0.672:2	0/1:88,107:33:195:0.549:2	0/1:156,40:32:196:0.204:2
chr7	5997542	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,14:32:53:0.264:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	5997562	rs199639000	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,46:32:182:0.253:2	0/1:145,48:32:193:0.249:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,42:29:182:0.233:2
chr7	5997641	rs201932419	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,25:32:124:0.202:2	./.	./.	./.	0/1:158,40:32:198:0.202:2	./.	./.	./.	./.
chr7	6000354	rs200023166	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:143,44:33:187:0.235:2	./.	./.	./.	./.	./.	./.	./.
chr7	6000452	rs201408132	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:178,14:31:192:0.073:2	./.	./.	./.	./.	0/1:161,27:32:188:0.144:2	0/1:149,40:32:189:0.212:2
chr7	6004123	rs201967359	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:147,41:34:188:0.218:2	0/1:155,38:33:193:0.197:2	./.	./.	0/1:155,42:33:197:0.213:2	./.	./.	0/1:166,29:33:195:0.149:2	0/1:154,41:34:195:0.210:2	0/1:103,96:33:199:0.482:2	./.
chr7	6005323	rs200962894	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,48:32:199:0.241:2	./.	./.	0/1:175,23:33:198:0.116:2	./.	0/1:155,32:32:187:0.171:2
chr7	6013049	rs1802683	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,37:33:195:0.190:2	./.	./.	0/1:144,50:34:194:0.258:2	./.	0/1:164,33:34:197:0.168:2
chr7	6013153	rs10000	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:129,34:33:163:0.209:2	0/1:147,52:34:199:0.261:2	./.	./.	0/1:103,96:34:199:0.482:2	0/1:106,90:33:196:0.459:2	0/1:147,48:34:195:0.246:2	./.	0/1:95,98:34:193:0.508:2
chr7	6026444	rs267608167	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,5:33:169:0.030:2	./.	./.
chr7	6026530	rs1805324	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,46:31:108:0.430:2	./.	./.
chr7	6026775	rs2228006	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,24:32:72:0.333:2	0/1:13,21:32:34:0.618:2	0/1:0,4:32:4:1.00:2	0/1:49,33:32:82:0.402:2	0/1:43,34:32:77:0.442:2	0/1:58,53:32:111:0.477:2	0/1:0,58:32:58:1.00:2	0/1:0,79:32:79:1.00:2	0/1:51,36:33:87:0.414:2	0/1:0,54:33:54:1.00:2	0/1:0,59:33:59:1.00:2
chr7	6026988	rs1805321	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,27:33:59:0.458:2	0/1:16,17:32:33:0.515:2	./.	0/1:46,15:32:61:0.246:2	0/1:52,21:31:73:0.288:2	./.	0/1:2,73:31:75:0.973:2	0/1:1,88:31:89:0.989:2	./.	0/1:0,54:32:54:1.00:2	0/1:49,39:31:88:0.443:2
chr7	6029441	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:33:98:0.041:2	./.	./.	./.	./.	./.
chr7	6036980	rs1805319	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:103,80:30:183:0.437:2	0/1:32,55:29:87:0.632:2	0/1:0,17:30:17:1.00:2	0/1:108,85:30:194:0.440:2	0/1:110,70:29:180:0.389:2	0/1:126,64:29:190:0.337:2	0/1:0,154:29:154:1.00:2	0/1:4,187:29:191:0.979:2	./.	0/1:0,187:30:187:1.00:2	0/1:0,187:30:187:1.00:2
chr7	6043613	rs143162541	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:90,4:30:94:0.043:2	0/1:136,8:32:144:0.056:2	./.	./.	./.	./.	./.
chr7	6043658	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:134,4:31:138:0.029:2	0/1:182,9:30:191:0.047:2	./.	./.	./.	0/1:190,5:33:195:0.026:2	./.
chr7	6063283	rs4560	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,42:30:100:0.420:2	0/1:28,27:31:55:0.491:2	0/1:9,3:32:12:0.250:2	0/1:65,49:31:114:0.430:2	0/1:76,59:31:135:0.437:2	0/1:92,88:30:180:0.489:2	0/1:4,117:31:121:0.967:2	0/1:1,136:31:137:0.993:2	./.	0/1:0,104:31:105:1.00:2	0/1:92,51:31:143:0.357:2
chr7	6066461	rs2639	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,40:29:85:0.471:2
chr7	6071060	rs4724769	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,28:32:59:0.475:2	0/1:21,9:32:30:0.300:2	0/1:7,4:32:11:0.364:2	0/1:37,48:31:86:0.565:2	0/1:42,34:31:76:0.447:2	0/1:42,27:31:69:0.391:2	0/1:0,98:32:98:1.00:2	0/1:0,83:31:83:1.00:2	./.	0/1:0,55:31:55:1.00:2	0/1:34,53:31:88:0.609:2
chr7	6071115	rs12334093	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,47:29:106:0.443:2
chr7	6075823	rs2302334	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,14:33:31:0.452:2	0/1:11,10:33:21:0.476:2	./.	0/1:25,17:32:42:0.405:2	0/1:14,8:31:22:0.364:2	0/1:28,10:32:38:0.263:2	0/1:1,22:31:23:0.957:2	0/1:0,25:32:25:1.00:2	./.	0/1:0,24:33:24:1.00:2	0/1:46,23:33:69:0.333:2
chr7	6080595	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:32:152:0.026:2
chr7	6086638	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.
chr7	6189690	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:33:74:0.054:2	./.	./.	./.
chr7	6189780	rs3764814	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:33:8:0.375:2	./.	0/1:22,28:32:50:0.560:2	./.	./.	./.	./.	./.	./.
chr7	6193752	rs61753119	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.	./.	./.
chr7	6194383	rs73058659	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,12:31:35:0.343:2	./.	./.	./.
chr7	6199072	rs3750064	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:33:13:0.538:2	./.	0/1:28,30:32:58:0.517:2	./.	./.	./.	./.	./.	./.
chr7	6204999	rs2301910	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,67:30:138:0.486:2	0/1:53,38:29:91:0.418:2	0/1:0,24:29:24:1.00:2	0/1:101,54:29:155:0.348:2	0/1:0,110:29:110:1.00:2	0/1:70,62:30:132:0.470:2	0/1:1,99:29:100:0.990:2	0/1:0,133:29:133:1.00:2	./.	0/1:0,139:29:139:1.00:2	0/1:1,146:29:147:0.993:2
chr7	6370077	rs2241445	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,8:31:17:0.471:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	6370144	rs1043965	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:32:11:0.455:2	./.	0/1:35,29:32:64:0.453:2	0/1:2,78:31:80:0.975:2	./.	0/1:58,50:31:108:0.463:2	./.	./.	0/1:60,58:32:118:0.492:2
chr7	6370194	rs6952125	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,29:31:63:0.460:2	0/1:29,23:31:52:0.442:2	0/1:5,8:31:13:0.615:2	0/1:1,84:32:85:0.988:2	0/1:0,71:31:71:1.00:2	0/1:0,66:31:66:1.00:2	0/1:50,47:32:97:0.485:2	0/1:50,47:32:97:0.485:2	0/1:1,129:33:130:0.992:2	0/1:26,34:31:60:0.567:2	0/1:44,56:32:100:0.560:2
chr7	6370305	rs3750039	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,29:32:60:0.492:2	0/1:19,16:31:35:0.457:2	0/1:1,5:30:6:0.833:2	0/1:1,49:32:50:0.980:2	0/1:0,58:33:58:1.00:2	0/1:2,79:32:81:0.975:2	0/1:35,33:32:68:0.485:2	0/1:48,44:32:92:0.478:2	0/1:0,73:33:73:1.00:2	0/1:31,33:32:64:0.516:2	0/1:28,49:32:77:0.636:2
chr7	6370406	rs3750040	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,18:32:43:0.419:2	0/1:11,9:33:20:0.450:2	./.	0/1:3,48:32:51:0.941:2	0/1:0,37:32:37:1.00:2	0/1:1,45:32:46:0.978:2	0/1:30,28:32:58:0.483:2	0/1:20,17:33:37:0.459:2	0/1:0,45:33:45:1.00:2	0/1:28,18:33:46:0.391:2	0/1:21,24:29:45:0.533:2
chr7	6370570	rs61996356	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,18:28:58:0.310:2	./.	./.	./.	./.	./.
chr7	6370575	rs3750041	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,63:32:63:1.00:2	./.	./.	./.	./.	./.
chr7	6370703	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:29:79:0.051:2	./.	./.
chr7	6449496	rs2303361	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:42,43:30:85:0.506:2	0/1:31,23:32:54:0.426:2	./.	./.	./.	./.	0/1:55,45:31:100:0.450:2	./.	0/1:47,47:33:94:0.500:2	0/1:49,19:31:68:0.279:2	./.
chr7	6449967	rs77154720	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,85:32:156:0.545:2	./.	./.	0/1:105,60:33:165:0.364:2	./.	./.	0/1:52,54:32:106:0.509:2
chr7	6456302	rs2288152	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,16:31:26:0.615:2	./.	./.	./.	./.	./.	./.
chr7	6456319	rs1055430	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,6:32:9:0.667:2	./.	0/1:15,13:31:28:0.464:2	./.	./.
chr7	6456347	rs1055428	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,7:32:10:0.700:2	0/1:0,7:31:7:1.00:2	./.	./.	./.	./.	./.	./.	0/1:10,14:32:24:0.583:2	0/1:3,18:29:21:0.857:2	./.
chr7	6461348	rs836514	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:31:6:0.667:2	0/1:36,23:31:59:0.390:2	./.	./.	./.	0/1:61,34:30:95:0.358:2	./.	./.	./.
chr7	6464431	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:29:90:0.044:2	./.	./.	./.	./.	./.
chr7	6476104	rs117103601	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,24:28:52:0.462:2	./.	./.	0/1:48,60:31:108:0.556:2	./.	./.	0/1:53,37:31:90:0.411:2
chr7	6505901	rs2230263	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,54:32:55:0.982:2	0/1:0,25:32:25:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,65:33:65:1.00:2	0/1:34,40:32:74:0.541:2	0/1:0,71:32:71:1.00:2
chr7	6509297	rs185368756	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,18:31:51:0.353:2	./.	./.	./.	./.	./.	./.
chr7	6537446	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,3:32:19:0.158:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	6537821	rs6463568	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:33:31:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,22:32:22:1.00:2	0/1:1,16:33:17:0.941:2	0/1:0,22:32:22:1.00:2	0/1:1,23:33:24:0.958:2	0/1:13,6:30:19:0.316:2	0/1:0,12:31:12:1.00:2
chr7	6547902	rs112305062	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,11:28:14:0.786:2	0/1:1,6:32:7:0.857:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	6550584	rs61732374	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,13:32:27:0.481:2	./.	./.	./.	./.	./.
chr7	6566322	rs2881723	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:28:5:1.00:2	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.
chr7	6590924	rs150447156	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2
chr7	6591009	rs11761490	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,17:34:24:0.708:2	0/1:18,13:32:31:0.419:2	./.
chr7	6591041	rs4724818	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,27:32:27:1.00:2	0/1:1,14:33:15:0.933:2	./.	0/1:26,21:33:47:0.447:2	0/1:22,12:32:34:0.353:2	0/1:2,33:32:35:0.943:2	0/1:0,27:33:27:1.00:2	0/1:22,25:32:47:0.532:2	0/1:24,17:34:41:0.415:2	0/1:17,22:32:39:0.564:2	0/1:25,13:32:38:0.342:2
chr7	6621277	rs11559146	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,8:30:19:0.421:2	0/1:49,61:32:110:0.555:2	./.	./.	./.	0/1:60,55:31:115:0.478:2	./.	./.	./.
chr7	6623017	rs144937586	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,60:30:134:0.451:2	./.	./.
chr7	6639953	rs34300529	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,5:31:19:0.263:2	./.	./.	./.	0/1:7,12:30:19:0.632:2	./.	./.	./.
chr7	6647738	rs4416743	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,7:31:7:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,28:32:28:1.00:2	0/1:25,26:31:51:0.510:2	0/1:0,23:30:23:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,39:32:39:1.00:2	0/1:13,8:31:21:0.381:2	0/1:18,9:32:27:0.333:2	0/1:8,9:32:17:0.529:2
chr7	6656830	rs2243563	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,11:32:27:0.407:2	0/1:0,22:32:22:1.00:2	./.	./.	0/1:0,36:32:36:1.00:2	0/1:16,11:33:27:0.407:2	0/1:0,26:33:26:1.00:2	0/1:11,14:32:25:0.560:2
chr7	6656897	rs1806552	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:31:2:1.00:2	0/1:14,12:31:26:0.462:2	0/1:0,27:30:27:1.00:2	./.	./.	0/1:0,35:30:35:1.00:2	0/1:19,5:31:24:0.208:2	0/1:0,33:30:33:1.00:2	0/1:11,14:31:25:0.560:2
chr7	6660790	rs940873	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,15:30:25:0.600:2	./.	./.	./.	0/1:25,21:31:46:0.457:2	0/1:6,12:28:18:0.667:2	0/1:18,12:31:30:0.400:2
chr7	6660881	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,8:32:40:0.200:2
chr7	6661185	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:36:191:0.021:2	./.	./.	./.	./.
chr7	6661186	rs118032733	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:36:191:0.021:2	./.	./.	./.	./.
chr7	6731672	rs61731528	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,26:32:46:0.565:2	./.	./.	0/1:33,28:33:61:0.459:2	./.	0/1:26,23:33:49:0.469:2	./.
chr7	6797520	rs201352760	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:147,21:31:168:0.125:2	0/1:121,8:31:129:0.062:2	0/1:37,4:30:41:0.098:2	./.	0/1:186,8:32:194:0.041:2	./.	./.	0/1:190,7:31:197:0.036:2	./.	./.	0/1:182,9:31:191:0.047:2
chr7	6798735	rs199536223	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,39:32:199:0.196:2	./.	./.	0/1:159,38:33:197:0.193:2	./.	0/1:151,41:32:192:0.214:2
chr7	6799935	rs202175886	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:151,43:33:194:0.222:2	0/1:151,38:32:189:0.201:2	./.	./.	0/1:165,33:31:198:0.167:2	./.	./.	0/1:159,36:33:195:0.185:2	0/1:156,38:32:195:0.196:2	0/1:103,97:33:200:0.485:2	./.
chr7	6803602	rs200943820	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:144,52:32:196:0.265:2	./.	./.	./.	./.	0/1:141,45:31:186:0.242:2	0/1:134,53:32:187:0.283:2
chr7	6803700	rs376009701	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:137,44:33:182:0.243:2	./.	./.	./.	./.	./.	./.	./.
chr7	6805410	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:197:0.020:2	./.	./.	./.	./.	./.
chr7	6806405	rs201147032	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,22:32:110:0.200:2	./.	./.	./.	0/1:147,46:33:193:0.238:2	./.	./.	./.	./.
chr7	6806484	rs200372181	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,46:31:184:0.251:2	0/1:144,46:32:190:0.242:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,40:28:177:0.226:2
chr7	6806504	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,21:33:62:0.339:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	6816032	rs201658191	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:64,126:33:190:0.663:2	0/1:44,145:33:189:0.767:2	0/1:32,47:32:79:0.595:2	./.	0/1:70,126:32:196:0.643:2	0/1:102,96:31:198:0.485:2	0/1:147,41:33:188:0.218:2	0/1:85,104:32:189:0.550:2	0/1:53,146:34:199:0.734:2	0/1:75,122:33:197:0.619:2	0/1:162,37:34:199:0.186:2
chr7	6819329	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:158,29:33:187:0.155:2	0/1:150,47:32:197:0.239:2	0/1:104,25:31:129:0.194:2	./.	0/1:165,32:31:197:0.162:2	0/1:166,32:32:199:0.162:2	./.	./.	0/1:155,39:33:194:0.201:2	./.	./.
chr7	6820493	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:34:173:0.023:2
chr7	6820970	rs202078617	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,85:33:194:0.438:2	0/1:105,53:32:158:0.335:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,94:33:197:0.477:2
chr7	6820992	rs201342603	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:154,39:34:193:0.202:2	./.	./.	0/1:167,28:32:195:0.144:2	0/1:147,50:32:197:0.254:2	0/1:161,32:33:194:0.166:2	./.	0/1:172,22:32:195:0.113:2
chr7	6820999	rs200394640	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,85:30:195:0.436:2	0/1:107,86:31:193:0.446:2	./.	./.	./.	0/1:154,40:30:194:0.206:2	./.	0/1:165,32:30:197:0.162:2	0/1:121,76:31:197:0.386:2	0/1:163,31:31:195:0.160:2	./.
chr7	6821050	rs140658665	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,175:29:175:1.00:2	0/1:2,178:29:180:0.989:2	0/1:1,66:29:67:0.985:2	0/1:105,82:30:187:0.439:2	0/1:61,130:29:191:0.681:2	0/1:118,77:31:195:0.395:2	0/1:114,78:29:192:0.406:2	0/1:115,77:29:192:0.401:2	0/1:102,84:30:187:0.452:2	0/1:39,150:29:189:0.794:2	0/1:62,123:29:186:0.665:2
chr7	6829286	rs200987050	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:157,40:31:197:0.203:2	./.	./.	0/1:158,41:33:199:0.206:2	0/1:162,34:32:196:0.173:2	./.	./.	0/1:156,34:31:190:0.179:2
chr7	6831629	rs201513226	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,26:32:190:0.137:2	0/1:144,35:32:179:0.196:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,32:32:199:0.161:2
chr7	6836259	rs201076392	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,8:29:191:0.042:2	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.
chr7	6838006	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,3:31:12:0.250:2
chr7	6838839	rs199812517	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:145,32:34:177:0.181:2	0/1:148,29:33:177:0.164:2	0/1:79,79:32:158:0.500:2	0/1:167,28:33:195:0.144:2	0/1:166,30:33:196:0.153:2	0/1:162,30:33:192:0.156:2	0/1:134,60:34:194:0.309:2	0/1:130,67:34:197:0.340:2	0/1:164,28:35:192:0.146:2	./.	./.
chr7	6838885	rs201457485	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:162,36:32:198:0.182:2	./.	./.	0/1:174,24:32:198:0.121:2	0/1:108,88:32:196:0.449:2	./.	./.	./.
chr7	6838915	rs201369925	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:122,38:30:160:0.238:2	0/1:151,35:30:186:0.188:2	./.	0/1:124,45:31:169:0.266:2	0/1:151,44:32:195:0.226:2	0/1:112,36:32:148:0.243:2	0/1:122,25:30:147:0.170:2
chr7	6844574	rs75680229	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:12,173:33:185:0.935:2	0/1:1,165:33:166:0.994:2	./.	./.	./.	./.	./.	0/1:8,132:33:140:0.943:2	0/1:113,83:33:196:0.423:2	0/1:7,179:32:186:0.962:2	0/1:7,153:33:160:0.956:2
chr7	6844681	rs202100248	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:149,25:30:174:0.144:2	0/1:80,19:29:99:0.192:2	./.	0/1:154,11:29:165:0.067:2	0/1:98,14:30:112:0.125:2	./.	0/1:46,33:30:79:0.418:2	./.
chr7	6852592	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:160,35:31:195:0.179:2	./.	./.	./.	./.	./.	./.
chr7	6854416	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,6:30:194:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr7	6859402	rs200223833	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:161,37:30:198:0.187:2	./.	./.	./.	./.	./.	./.
chr7	6859453	rs145992513	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:37,17:29:54:0.315:2	0/1:154,44:29:198:0.222:2	0/1:148,41:28:189:0.217:2	./.	0/1:148,46:29:194:0.237:2	0/1:147,51:29:199:0.258:2	./.	0/1:104,94:29:198:0.475:2	0/1:152,45:30:197:0.228:2
chr7	6862925	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:80,9:30:89:0.101:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,6:31:164:0.037:2	./.
chr7	6862936	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:95,13:25:108:0.120:2	0/1:66,8:29:74:0.108:2	./.	./.	./.	./.	./.	./.	./.	0/1:174,16:25:190:0.084:2	0/1:138,12:28:150:0.080:2
chr7	7274118	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,5:32:111:0.045:2
chr7	7274151	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,5:33:83:0.060:2
chr7	7278044	rs181239665	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:32:9:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	7278447	rs61744815	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,44:31:105:0.419:2	./.	./.
chr7	7413149	rs61744841	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,17:28:27:0.630:2	./.	./.	./.	0/1:15,18:29:33:0.545:2	0/1:8,3:27:11:0.273:2	./.	./.
chr7	7457571	rs78066683	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,9:32:11:0.818:2	./.	./.	./.	0/1:8,13:31:21:0.619:2	0/1:8,6:33:14:0.429:2	./.	./.
chr7	7476092	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	7484086	rs79817423	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,51:32:107:0.477:2	./.	./.	./.	./.	./.
chr7	7493122	rs17519199	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,7:31:14:0.500:2	./.	./.	./.	./.	./.
chr7	7495735	rs55745506	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,5:32:13:0.385:2	0/1:24,18:33:42:0.429:2	./.	./.	./.
chr7	7514235	rs6952195	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,27:32:62:0.435:2	0/1:53,18:32:71:0.254:2	./.	./.	./.
chr7	7551406	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,4:32:143:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr7	7561580	rs10486180	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,25:32:56:0.446:2
chr7	7571094	rs7804532	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:32:69:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,83:33:83:1.00:2	0/1:0,76:31:76:1.00:2	0/1:0,121:32:121:1.00:2
chr7	7613039	rs61744397	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,63:33:116:0.543:2	0/1:55,36:32:91:0.396:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	7613194	rs189971963	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,28:32:64:0.438:2	./.	./.	./.	./.	./.	./.
chr7	7622978	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:29:76:0.053:2	./.	./.	./.
chr7	7646651	rs7806046	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:33:43:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,69:33:69:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,84:33:84:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,59:33:59:1.00:2	0/1:0,61:33:62:1.00:2	0/1:0,84:33:84:1.00:2
chr7	7646687	rs4222	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,11:31:28:0.393:2	0/1:20,14:30:34:0.412:2	./.	0/1:43,25:31:68:0.368:2	0/1:0,66:29:66:1.00:2	0/1:0,67:30:67:1.00:2	0/1:1,39:30:40:0.975:2	0/1:0,72:30:72:1.00:2	0/1:43,24:30:67:0.358:2	0/1:0,33:30:33:1.00:2	0/1:26,33:30:60:0.559:2
chr7	7841338	rs11555073	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,28:33:42:0.667:2	0/1:8,7:32:15:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	8125964	rs929509	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,93:32:93:1.00:2	0/1:1,41:32:42:0.976:2	0/1:0,3:31:3:1.00:2	0/1:28,59:33:87:0.678:2	0/1:32,27:31:59:0.458:2	0/1:37,49:32:86:0.570:2	0/1:50,46:33:96:0.479:2	0/1:35,46:32:81:0.568:2	0/1:38,48:33:86:0.558:2	0/1:26,40:32:66:0.606:2	0/1:55,49:33:104:0.471:2
chr7	8132252	rs4725069	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:32:49:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,6:32:6:1.00:2	0/1:25,38:32:63:0.603:2	0/1:33,20:32:53:0.377:2	0/1:33,25:32:58:0.431:2	0/1:35,21:32:56:0.375:2	0/1:32,37:33:69:0.536:2	0/1:35,29:32:64:0.453:2	0/1:24,11:33:35:0.314:2	0/1:27,47:32:74:0.635:2
chr7	8196529	rs10282493	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,47:32:82:0.573:2	0/1:11,37:32:48:0.771:2	0/1:0,13:32:13:1.00:2	0/1:0,103:31:103:1.00:2	0/1:2,93:31:95:0.979:2	0/1:1,85:31:86:0.988:2	0/1:1,91:31:92:0.989:2	0/1:0,87:31:87:1.00:2	0/1:0,118:32:118:1.00:2	0/1:1,85:32:86:0.988:2	0/1:2,98:31:100:0.980:2
chr7	8475410	rs79827866	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,45:31:103:0.437:2	./.	./.	./.	./.	./.	./.	./.
chr7	11022230	rs218966	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:32:10:0.400:2	0/1:0,8:31:8:1.00:2	./.	0/1:0,7:32:7:1.00:2	0/1:1,8:34:9:0.889:2	0/1:0,10:34:10:1.00:2	./.	0/1:8,4:33:12:0.333:2
chr7	11022564	rs218965	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:30:4:1.00:2	0/1:37,39:31:76:0.513:2	0/1:0,46:31:46:1.00:2	./.	0/1:3,76:32:79:0.962:2	0/1:2,77:31:80:0.975:2	0/1:0,52:32:52:1.00:2	./.	0/1:41,25:32:66:0.379:2
chr7	11068314	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:33:130:0.031:2	./.	./.	./.	./.
chr7	11068421	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,5:29:160:0.031:2
chr7	11082439	rs61753125	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,21:34:49:0.429:2	./.	./.
chr7	11457158	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:33:121:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	11500372	rs118134876	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,15:32:40:0.375:2	0/1:15,8:32:23:0.348:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,17:32:49:0.347:2
chr7	11509561	rs2285744	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:37,25:33:62:0.403:2	0/1:20,31:32:51:0.608:2	0/1:8,3:34:11:0.273:2	./.	0/1:43,37:33:80:0.463:2	./.	0/1:1,89:32:90:0.989:2	./.	0/1:44,33:34:77:0.429:2	0/1:1,67:32:68:0.985:2	0/1:45,29:33:74:0.392:2
chr7	11514027	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.	./.
chr7	11521428	rs61996277	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,75:29:184:0.410:2	0/1:50,56:28:106:0.528:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	11521507	rs185949384	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,77:32:168:0.461:2	0/1:69,49:32:118:0.415:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	11521542	rs3735502	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:72,78:28:150:0.520:2	0/1:39,45:28:84:0.536:2	0/1:9,16:28:25:0.640:2	./.	./.	./.	./.	./.	0/1:96,74:29:170:0.435:2	0/1:85,76:28:161:0.472:2	./.
chr7	11581121	rs47	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,61:31:149:0.409:2	0/1:62,60:32:122:0.492:2	0/1:0,28:33:28:1.00:2	0/1:1,118:33:119:0.992:2	0/1:1,152:32:153:0.993:2	0/1:1,134:32:135:0.993:2	0/1:96,55:33:151:0.364:2	0/1:0,156:33:156:1.00:2	0/1:0,146:34:146:1.00:2	0/1:79,63:33:142:0.444:2	0/1:70,54:33:124:0.435:2
chr7	11581134	rs2074603	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,16:28:24:0.667:2	0/1:1,106:29:107:0.991:2	0/1:1,135:28:136:0.993:2	0/1:1,132:28:133:0.992:2	0/1:93,59:29:152:0.388:2	./.	./.	./.	0/1:66,58:28:124:0.468:2
chr7	11675855	rs61996273	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,40:32:105:0.385:2	./.	./.	./.	./.
chr7	11676377	rs2074598	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:73,55:33:128:0.430:2	0/1:46,35:32:81:0.432:2	0/1:5,5:32:10:0.500:2	./.	./.	./.	0/1:53,45:33:98:0.459:2	./.	./.	./.	./.
chr7	12255305	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:32:160:0.025:2	./.	./.	./.	./.	./.
chr7	12263971	rs147889591	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,80:32:145:0.552:2	./.
chr7	12269417	rs3173615	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,100:33:193:0.518:2	0/1:76,70:32:146:0.479:2	./.	0/1:95,72:33:167:0.431:2	./.	./.	./.	0/1:102,80:33:182:0.440:2
chr7	12370793	rs187504535	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,22:28:42:0.524:2	./.	./.	./.
chr7	12370794	rs1059002	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,28:32:29:0.966:2	0/1:0,28:32:28:1.00:2	0/1:6,4:32:10:0.400:2	0/1:15,27:32:42:0.643:2	./.	0/1:0,37:32:37:1.00:2	0/1:0,22:32:22:1.00:2	0/1:1,41:31:42:0.976:2	0/1:22,24:32:46:0.522:2	0/1:0,25:31:25:1.00:2	0/1:30,19:32:49:0.388:2
chr7	12370847	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,5:29:15:0.357:2	./.
chr7	12376811	rs2192828	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,157:32:158:0.994:2	0/1:0,95:33:95:1.00:2	0/1:16,9:32:25:0.360:2	0/1:75,64:32:139:0.460:2	./.	0/1:0,187:32:187:1.00:2	0/1:3,146:32:149:0.980:2	0/1:1,143:32:144:0.993:2	0/1:88,88:33:176:0.500:2	0/1:0,172:33:172:1.00:2	0/1:75,90:33:165:0.545:2
chr7	12391319	rs6967385	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:29,20:30:49:0.408:2	0/1:21,5:31:26:0.192:2	./.	0/1:33,30:30:63:0.476:2	./.	0/1:0,49:30:49:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,37:30:37:1.00:2	0/1:36,23:32:59:0.390:2	0/1:0,30:31:30:1.00:2	./.
chr7	12395813	rs2119141	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,13:32:13:1.00:2	0/1:0,96:33:96:1.00:2	0/1:0,98:31:98:1.00:2	0/1:0,117:32:117:1.00:2	0/1:65,53:33:118:0.449:2	0/1:2,114:32:116:0.983:2	0/1:0,103:33:103:1.00:2	0/1:0,80:33:80:1.00:2	0/1:69,44:33:113:0.389:2
chr7	12396897	rs1866650	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,29:32:44:0.659:2	0/1:16,10:32:26:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,22:32:40:0.550:2
chr7	12397130	rs200134838	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,5:25:24:0.208:2	./.	./.	./.
chr7	12400837	rs2053380	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,32:32:62:0.516:2	0/1:29,20:32:49:0.408:2	0/1:4,4:31:8:0.500:2	0/1:54,39:32:93:0.419:2	0/1:0,49:32:49:1.00:2	0/1:26,23:31:49:0.469:2	./.	./.	0/1:57,32:33:89:0.360:2	./.	0/1:0,92:32:92:1.00:2
chr7	12400848	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,24:31:48:0.500:2	./.	./.	./.	./.	./.
chr7	12406989	rs6460939	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,9:32:13:0.692:2	0/1:34,23:32:57:0.404:2	0/1:16,14:31:30:0.467:2	0/1:34,24:31:58:0.414:2	./.	./.	0/1:41,26:33:67:0.388:2	./.	0/1:33,42:33:75:0.560:2
chr7	12410112	rs963323	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,4:31:10:0.400:2	0/1:3,4:32:7:0.571:2	./.	0/1:0,10:31:10:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,8:31:8:1.00:2	0/1:3,4:32:7:0.571:2	./.	0/1:0,4:31:4:1.00:2	./.	0/1:0,13:30:13:1.00:2
chr7	12417407	rs7793993	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,11:32:26:0.423:2	0/1:17,8:31:25:0.320:2	./.	0/1:22,15:31:37:0.405:2	0/1:8,9:31:17:0.529:2	0/1:15,16:30:31:0.516:2	./.	./.	0/1:18,11:32:29:0.379:2	./.	0/1:0,52:32:53:1.00:2
chr7	12419108	rs6967241	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,24:31:44:0.545:2	0/1:18,17:31:35:0.486:2	0/1:5,8:31:13:0.615:2	0/1:16,38:31:54:0.704:2	0/1:28,13:32:41:0.317:2	0/1:30,28:31:58:0.483:2	./.	./.	0/1:0,74:33:74:1.00:2	0/1:31,35:32:66:0.530:2	0/1:0,64:32:64:1.00:2
chr7	12428550	rs848019	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:7,5:30:12:0.417:2	0/1:9,7:32:16:0.438:2	./.	./.	./.	./.	0/1:8,6:32:14:0.429:2	0/1:29,10:32:39:0.256:2	./.	./.	./.
chr7	12428582	rs848018	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:7,9:32:16:0.563:2	./.	./.	./.	./.	0/1:4,5:31:9:0.556:2	0/1:11,3:33:14:0.214:2	./.	./.	./.
chr7	12428608	rs6954047	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,6:32:8:0.750:2	0/1:10,6:34:16:0.375:2	./.	0/1:7,12:31:19:0.632:2	0/1:10,7:31:17:0.412:2	0/1:0,19:31:19:1.00:2	0/1:5,4:30:9:0.444:2	./.	./.	0/1:11,12:32:23:0.522:2	0/1:19,5:33:24:0.208:2
chr7	12428614	rs113732443	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.
chr7	12428803	rs848016	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:32:50:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,6:31:6:1.00:2	0/1:25,23:31:48:0.479:2	0/1:34,23:31:57:0.404:2	0/1:0,36:31:36:1.00:2	0/1:1,22:30:23:0.957:2	0/1:24,25:31:49:0.510:2	./.	0/1:20,27:32:47:0.574:2	0/1:38,24:31:62:0.387:2
chr7	12610451	rs76096341	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:19,30:32:49:0.612:2	0/1:26,21:32:47:0.447:2	./.	./.	./.	./.	0/1:17,19:32:36:0.528:2	./.	./.	./.	./.
chr7	12610594	rs2240572	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,31:31:74:0.419:2	0/1:20,19:29:39:0.487:2	./.	0/1:58,29:31:87:0.333:2	0/1:1,85:30:86:0.988:2	./.	0/1:36,28:31:65:0.438:2	0/1:34,36:30:70:0.514:2	0/1:47,28:31:75:0.373:2	0/1:0,39:31:39:1.00:2	./.
chr7	12611179	rs12699405	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,8:31:31:0.258:2	./.	./.	./.
chr7	12611252	rs6460967	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,4:33:12:0.333:2	0/1:6,3:32:9:0.333:2	./.	0/1:8,6:33:14:0.429:2	0/1:0,4:31:4:1.00:2	0/1:6,4:32:10:0.400:2	0/1:0,5:27:5:1.00:2	0/1:0,8:33:8:1.00:2	0/1:5,4:34:9:0.444:2	0/1:0,10:33:10:1.00:2	./.
chr7	12620804	rs17283717	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,30:31:60:0.500:2	0/1:17,18:31:35:0.514:2	0/1:7,5:30:12:0.417:2	0/1:43,36:31:79:0.456:2	0/1:1,35:30:36:0.972:2	./.	0/1:65,26:31:91:0.286:2	./.	0/1:52,31:30:83:0.373:2	0/1:0,48:30:48:1.00:2	./.
chr7	12675690	rs35385652	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,52:32:123:0.423:2	./.	./.	./.	./.	./.	./.	./.
chr7	12675713	rs17166250	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,61:33:125:0.488:2	./.	./.	./.	./.	./.	./.	./.
chr7	12727961	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,5:33:112:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	12728357	rs2356696	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:190,4:33:194:0.021:2	./.	./.	0/1:182,4:34:186:0.022:2	0/1:172,6:29:178:0.034:2	0/1:190,4:34:195:0.021:2	0/1:178,6:33:184:0.033:2	0/1:185,6:29:191:0.031:2	./.	./.	./.
chr7	12728489	rs112853446	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,86:32:193:0.446:2	0/1:79,58:32:137:0.423:2	./.	./.	./.	0/1:99,97:32:196:0.495:2
chr7	12728747	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:33:176:0.023:2	./.
chr7	12728862	rs73053484	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,74:32:177:0.418:2	./.	./.	./.	./.	./.
chr7	12728882	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:32:106:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	12728977	rs2241748	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,16:31:35:0.457:2	./.	./.	./.	./.	./.	0/1:22,18:30:41:0.450:2	./.
chr7	12729269	rs1058268	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,16:33:28:0.571:2	./.	./.	./.	./.	0/1:15,13:32:28:0.464:2	./.	./.	./.	0/1:12,6:33:18:0.333:2	./.
chr7	12729604	rs62449782	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,38:33:79:0.481:2	0/1:18,24:33:42:0.571:2	0/1:0,4:32:4:1.00:2	0/1:34,29:32:63:0.460:2	./.	./.	./.	./.	./.	./.	./.
chr7	12729925	rs116246574	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,6:19:37:0.162:2	./.	./.	./.	./.	./.	./.
chr7	12729933	rs73053491	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,18:33:36:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr7	12730281	rs79385141	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,5:30:9:0.556:2	./.	./.	./.	0/1:5,3:31:8:0.375:2
chr7	12730317	rs76875269	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.	./.	./.	./.
chr7	12730362	rs35689560	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,15:33:15:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,2:32:2:1.00:2	0/1:9,10:33:19:0.526:2	./.	0/1:6,7:31:13:0.538:2	./.	0/1:12,7:32:19:0.368:2	0/1:21,13:34:34:0.382:2	./.	./.
chr7	12730503	rs73678526	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,10:32:39:0.256:2	./.
chr7	13975419	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,85:29:176:0.483:2	0/1:55,56:29:111:0.505:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	13978809	rs9639168	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:19,16:28:35:0.457:2	0/1:16,15:29:31:0.484:2	./.	0/1:36,27:29:63:0.429:2	./.	./.	0/1:13,21:29:34:0.618:2	0/1:0,42:29:42:1.00:2	./.	0/1:0,41:28:41:1.00:2	./.
chr7	14025727	rs3823704	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,12:31:32:0.375:2	0/1:11,6:31:17:0.353:2	./.	0/1:0,16:30:16:1.00:2	0/1:1,12:30:13:0.923:2	0/1:1,13:28:14:0.929:2	0/1:9,3:31:12:0.250:2	./.	0/1:0,19:32:19:1.00:2	0/1:3,3:32:6:0.500:2	0/1:0,18:31:18:1.00:2
chr7	14025766	rs10215655	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,11:32:29:0.379:2	0/1:9,3:33:12:0.250:2	./.	0/1:0,22:31:22:1.00:2	0/1:1,11:31:12:0.917:2	0/1:1,17:31:18:0.944:2	0/1:9,10:33:20:0.526:2	./.	0/1:7,14:33:22:0.667:2	0/1:9,6:32:15:0.400:2	0/1:0,24:32:24:1.00:2
chr7	14216442	rs17167945	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,21:29:40:0.525:2	./.	./.	./.	./.	./.	./.
chr7	14217673	rs6966154	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,9:31:13:0.692:2	./.	0/1:24,6:32:30:0.200:2	./.	./.	./.	./.
chr7	14620542	rs73680453	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,40:32:87:0.460:2	./.	./.	./.	./.
chr7	14724899	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,4:32:77:0.052:2	./.	./.	./.	./.	./.	./.	./.
chr7	14758273	rs1997040	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,19:29:38:0.500:2	./.	0/1:27,19:30:46:0.413:2	0/1:36,41:31:77:0.532:2	./.	0/1:22,30:31:52:0.577:2	0/1:43,49:30:93:0.533:2
chr7	14775769	rs10238323	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,24:33:55:0.436:2	./.	./.	./.	./.
chr7	14880815	rs192861756	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:33:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	15584400	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:31:123:0.033:2	./.	./.	./.	./.	./.
chr7	15601462	rs376010874	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,6:32:14:0.429:2	./.
chr7	16502239	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,11:22:158:0.070:2
chr7	16502245	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,13:14:134:0.097:2	./.
chr7	16503932	rs67149353	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,7:33:11:0.636:2	0/1:50,34:33:84:0.405:2	0/1:41,36:33:77:0.468:2	./.	./.	0/1:2,72:32:74:0.973:2	./.	./.	0/1:0,78:33:78:1.00:2
chr7	16566645	rs2301968	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,5:31:11:0.455:2	./.	0/1:7,5:30:12:0.417:2	./.	0/1:3,3:32:6:0.500:2	./.	./.
chr7	16572317	rs28558187	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,22:32:40:0.550:2	./.
chr7	16640491	rs541797	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:28,28:32:56:0.500:2	0/1:28,11:31:39:0.282:2	0/1:3,4:31:7:0.571:2	./.	0/1:2,30:30:32:0.938:2	./.	0/1:0,29:31:29:1.00:2	./.	0/1:31,30:33:61:0.492:2	./.	0/1:35,54:32:89:0.607:2
chr7	16655387	rs11540037	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,21:31:59:0.356:2	./.	0/1:38,25:31:63:0.397:2	./.	./.	0/1:30,36:32:66:0.545:2	./.	./.
chr7	16666741	rs11532682	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,25:34:56:0.446:2	0/1:18,19:32:37:0.514:2	0/1:4,6:33:10:0.600:2	0/1:43,18:33:61:0.295:2	0/1:37,32:32:69:0.464:2	0/1:43,25:33:68:0.368:2	0/1:38,30:32:68:0.441:2	0/1:52,41:33:93:0.441:2	./.	./.	0/1:36,35:34:71:0.493:2
chr7	16666759	rs11531477	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,21:33:50:0.420:2	0/1:13,16:32:29:0.552:2	0/1:4,4:32:8:0.500:2	0/1:27,17:33:44:0.386:2	0/1:35,26:33:61:0.426:2	0/1:32,19:32:51:0.373:2	0/1:30,22:32:52:0.423:2	0/1:44,28:32:72:0.389:2	./.	./.	0/1:31,27:33:58:0.466:2
chr7	16793668	rs75735669	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,54:30:151:0.358:2	0/1:77,77:30:154:0.500:2	./.	./.	0/1:84,75:31:159:0.472:2	./.	0/1:60,51:31:111:0.459:2	./.
chr7	16816000	rs2290837	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,100:33:101:0.990:2	0/1:1,48:33:49:0.980:2	0/1:5,4:32:9:0.444:2	0/1:2,89:33:91:0.978:2	0/1:50,56:32:106:0.528:2	0/1:2,92:32:94:0.979:2	./.	0/1:2,88:33:90:0.978:2	0/1:55,27:33:82:0.329:2	0/1:0,87:33:87:1.00:2	0/1:39,56:33:95:0.589:2
chr7	16818693	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,4:33:112:0.036:2	./.	./.	./.	./.	./.	./.
chr7	16823095	rs11491	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,18:32:21:0.857:2	0/1:0,13:32:13:1.00:2	0/1:0,3:33:4:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,19:31:19:1.00:2	0/1:15,14:31:29:0.483:2	0/1:19,12:31:31:0.387:2	0/1:23,14:33:37:0.378:2	0/1:0,40:32:40:1.00:2	0/1:22,12:33:34:0.353:2
chr7	16834551	rs4719480	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,119:31:119:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,122:30:122:1.00:2	0/1:0,127:30:127:1.00:2	0/1:0,129:29:129:1.00:2	0/1:86,52:30:138:0.377:2	0/1:0,167:30:167:1.00:2	0/1:0,138:31:138:1.00:2	0/1:0,129:30:129:1.00:2	0/1:0,146:30:146:1.00:2
chr7	16834597	rs6842	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,114:32:114:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,13:32:13:1.00:2	0/1:54,67:32:121:0.554:2	0/1:3,86:31:89:0.966:2	0/1:54,40:30:94:0.426:2	0/1:79,41:32:120:0.342:2	0/1:70,67:31:137:0.489:2	0/1:73,68:33:141:0.482:2	0/1:43,50:32:93:0.538:2	./.
chr7	16899197	rs11798	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,9:32:10:0.900:2	0/1:0,4:31:4:1.00:2	./.	0/1:0,6:31:6:1.00:2	0/1:5,3:31:8:0.375:2	0/1:9,9:31:18:0.500:2	./.	0/1:7,6:33:13:0.462:2	0/1:10,10:34:20:0.500:2	0/1:14,9:31:23:0.391:2	0/1:6,10:33:16:0.625:2
chr7	16913394	rs10249749	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:33:40:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,3:35:3:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,51:33:51:1.00:2	0/1:0,55:34:55:1.00:2	0/1:0,47:33:47:1.00:2	0/1:0,60:33:60:1.00:2
chr7	16913476	rs188737715	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,22:33:44:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr7	17349626	rs17779352	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,59:32:111:0.532:2	./.	./.	./.	./.	./.	./.	./.
chr7	17374607	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:32:101:0.040:2	./.
chr7	17379098	rs141403259	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,3:33:12:0.250:2	./.
chr7	17379110	rs2066853	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,8:27:8:1.00:2	0/1:8,3:31:11:0.273:2	./.	./.	./.
chr7	17379154	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:33:41:0.098:2
chr7	17854532	rs2723501	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:32:4:1.00:2	0/1:1,56:32:57:0.982:2	0/1:34,26:32:60:0.433:2	0/1:0,53:32:53:1.00:2	0/1:21,20:31:41:0.488:2	0/1:39,30:31:69:0.435:2	./.	0/1:20,21:32:41:0.512:2	0/1:22,19:32:41:0.463:2
chr7	17879553	rs12720473	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,39:33:71:0.549:2	0/1:56,47:33:103:0.456:2
chr7	17922533	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.
chr7	18066569	rs3800962	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:71,55:32:126:0.437:2	0/1:34,23:31:57:0.404:2	./.	0/1:75,80:31:155:0.516:2	0/1:73,62:30:135:0.459:2	./.	./.	0/1:95,68:30:163:0.417:2	./.	0/1:69,63:31:132:0.477:2	0/1:72,67:32:139:0.482:2
chr7	18067082	rs3800961	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,55:31:111:0.495:2	./.	./.
chr7	18067101	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,7:33:15:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	18067261	rs112075478	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,94:33:180:0.522:2	./.	./.
chr7	18674337	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:36:74:0.054:2	./.	./.
chr7	18767343	rs1178127	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,44:31:100:0.440:2	./.	0/1:62,48:30:110:0.436:2
chr7	18788727	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:33:103:0.039:2
chr7	18993870	rs2389998	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,15:31:15:1.00:2	0/1:0,21:32:21:1.00:2	./.	0/1:7,10:32:17:0.588:2	0/1:0,16:31:16:1.00:2	0/1:15,5:32:20:0.250:2	0/1:0,18:30:18:1.00:2	0/1:0,11:32:11:1.00:2	0/1:12,8:32:20:0.400:2	0/1:8,12:32:20:0.600:2	0/1:0,16:32:16:1.00:2
chr7	19015515	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:34:196:0.020:2	./.	./.
chr7	19744417	rs11543308	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,59:30:120:0.492:2
chr7	19744444	rs376566674	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:32:166:0.024:2
chr7	19813202	rs117555925	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,8:31:31:0.258:2	./.	./.	0/1:8,18:33:26:0.692:2
chr7	20180717	rs3735615	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,16:32:16:1.00:2	0/1:0,10:31:10:1.00:2	./.	0/1:3,11:33:14:0.786:2	0/1:0,9:32:9:1.00:2	0/1:11,4:32:15:0.267:2	0/1:8,3:32:11:0.273:2	0/1:2,5:33:7:0.714:2	0/1:0,17:32:17:1.00:2	0/1:8,12:32:20:0.600:2	0/1:0,12:32:12:1.00:2
chr7	20198440	rs975263	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,19:33:54:0.352:2	0/1:22,7:32:29:0.241:2	./.	0/1:39,28:31:67:0.418:2	0/1:27,25:32:52:0.481:2	./.	0/1:26,15:31:41:0.366:2	0/1:35,15:32:50:0.300:2	0/1:0,49:33:49:1.00:2	0/1:25,24:33:49:0.490:2	0/1:35,33:32:68:0.485:2
chr7	20198700	rs199756051	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,5:23:30:0.167:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	20201395	rs4721888	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,26:31:65:0.400:2	./.	./.	0/1:50,37:32:87:0.425:2	./.	0/1:42,34:33:76:0.447:2	./.
chr7	20418678	rs3735619	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,24:33:41:0.585:2	./.	./.	./.	./.	./.	./.	0/1:33,28:33:61:0.459:2
chr7	20421356	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,3:35:41:0.073:2	./.	./.	./.	./.	./.	./.
chr7	20421490	rs2230398	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,22:29:41:0.537:2	0/1:14,17:28:31:0.548:2	0/1:3,3:28:6:0.500:2	0/1:37,28:28:65:0.431:2	./.	./.	0/1:3,76:29:79:0.962:2	./.	./.	0/1:28,29:28:57:0.509:2	./.
chr7	20445734	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,5:29:140:0.036:2	./.	./.	./.
chr7	20445747	rs368140852	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,59:32:124:0.476:2
chr7	20666235	rs17143187	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,4:34:54:0.074:2	./.	./.	./.	./.	./.	./.
chr7	20682884	rs17143212	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,16:31:23:0.696:2	./.	./.	./.	./.	./.	./.	./.	0/1:95,82:32:177:0.463:2
chr7	20683204	rs7349983	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:78,76:30:155:0.494:2	0/1:36,56:31:92:0.609:2	0/1:12,10:29:22:0.455:2	./.	./.	./.	./.	0/1:89,74:29:163:0.454:2	./.	./.	0/1:114,80:30:194:0.412:2
chr7	20687181	rs2893006	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,61:31:124:0.492:2	0/1:46,22:31:68:0.324:2	0/1:12,7:30:19:0.368:2	0/1:110,56:30:166:0.337:2	./.	./.	0/1:89,32:30:121:0.264:2	0/1:85,52:30:137:0.380:2	./.	./.	./.
chr7	20687604	rs61732039	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:27,29:32:56:0.518:2	0/1:17,15:32:32:0.469:2	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	0/1:32,19:32:51:0.373:2	./.	./.	0/1:37,22:33:59:0.373:2
chr7	20691047	rs34603556	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,52:31:115:0.452:2	0/1:39,35:29:74:0.473:2	0/1:16,9:30:25:0.360:2	0/1:70,59:31:129:0.457:2	./.	./.	0/1:69,63:30:132:0.477:2	0/1:67,71:30:138:0.514:2	./.	./.	0/1:69,84:30:153:0.549:2
chr7	20691219	rs61227829	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:70,57:32:127:0.449:2	0/1:33,40:32:73:0.548:2	0/1:11,4:32:15:0.267:2	./.	./.	./.	./.	0/1:93,81:32:174:0.466:2	./.	./.	0/1:83,88:32:171:0.515:2
chr7	20698270	rs2301641	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,29:31:53:0.547:2	0/1:17,7:31:24:0.292:2	0/1:1,5:32:6:0.833:2	0/1:30,41:31:71:0.577:2	./.	./.	0/1:45,13:31:58:0.224:2	0/1:49,32:31:81:0.395:2	./.	./.	0/1:36,26:30:62:0.419:2
chr7	20721130	rs139741319	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,18:32:36:0.500:2	./.
chr7	20739672	rs12700230	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,22:31:52:0.423:2	0/1:29,17:31:46:0.370:2	./.	0/1:0,57:30:57:1.00:2	0/1:0,42:30:42:1.00:2	0/1:55,21:29:76:0.276:2	./.	0/1:32,28:30:60:0.467:2	./.	./.	./.
chr7	20762646	rs62453384	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:13,22:32:35:0.629:2	0/1:14,10:32:24:0.417:2	0/1:0,2:31:2:1.00:2	./.	0/1:0,18:31:18:1.00:2	./.	0/1:8,9:30:17:0.529:2	0/1:26,14:30:41:0.350:2	0/1:0,36:32:36:1.00:2	./.	0/1:29,18:31:47:0.383:2
chr7	20768013	rs10254317	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,47:33:105:0.448:2	./.	0/1:2,63:32:65:0.969:2	./.	0/1:48,48:33:96:0.500:2	./.	0/1:31,44:33:75:0.587:2	./.
chr7	20768077	rs117497357	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,22:31:58:0.379:2	./.	./.	./.
chr7	20778646	rs6461515	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,30:33:60:0.500:2	0/1:21,21:32:42:0.500:2	0/1:6,4:31:10:0.400:2	0/1:53,25:32:78:0.321:2	0/1:0,52:31:52:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,109:31:109:1.00:2	0/1:49,43:31:92:0.467:2	0/1:39,38:31:77:0.494:2	0/1:58,44:31:102:0.431:2
chr7	20795082	rs61999295	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:32:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	20824227	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,16:31:25:0.640:2	./.	./.	./.
chr7	20824614	rs34908430	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:31:7:0.571:2	./.	./.	./.	./.	./.	./.	0/1:3,4:32:7:0.571:2
chr7	20826452	rs34863300	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,44:33:80:0.550:2	./.	./.	0/1:36,41:32:77:0.532:2	./.	./.	./.	0/1:59,44:33:103:0.427:2
chr7	21467872	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:28:75:0.055:2	./.
chr7	21470069	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:30:120:0.033:2	./.	./.	./.
chr7	21582917	rs2285942	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:32:14:0.571:2	./.	./.	./.	./.	./.	0/1:7,3:31:10:0.300:2	./.
chr7	21582963	rs2285943	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,6:31:6:1.00:2	0/1:0,5:32:5:1.00:2	./.	0/1:8,8:31:16:0.500:2	0/1:1,7:29:8:0.875:2	0/1:0,6:29:6:1.00:2	0/1:0,5:31:5:1.00:2	./.	0/1:2,3:34:5:0.600:2	0/1:0,8:31:8:1.00:2	./.
chr7	21582964	rs2285944	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,6:30:6:1.00:2	0/1:0,5:32:5:1.00:2	./.	0/1:8,8:31:16:0.500:2	0/1:1,7:29:8:0.875:2	0/1:0,6:29:6:1.00:2	0/1:0,5:30:5:1.00:2	./.	0/1:2,3:34:5:0.600:2	0/1:0,8:31:8:1.00:2	./.
chr7	21599233	rs10950854	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:38,34:32:72:0.472:2	0/1:15,19:31:34:0.559:2	./.	0/1:46,26:31:72:0.361:2	./.	0/1:0,73:31:73:1.00:2	0/1:27,29:30:56:0.518:2	./.	./.	0/1:0,49:32:49:1.00:2	./.
chr7	21609691	rs72655982	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,31:30:90:0.344:2	0/1:35,26:31:61:0.426:2	./.	./.	./.	./.
chr7	21621541	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,4:31:39:0.103:2	./.	./.	./.
chr7	21621631	rs72655988	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,7:27:12:0.583:2	0/1:7,4:30:11:0.364:2	./.	./.	./.	./.
chr7	21628197	rs12670130	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,9:30:43:0.209:2	0/1:25,5:31:30:0.167:2	./.	./.	./.	0/1:23,20:29:43:0.465:2	./.	./.	./.	0/1:22,13:27:35:0.371:2	0/1:34,21:30:55:0.382:2
chr7	21628237	rs6963535	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,10:32:37:0.270:2	0/1:21,7:32:28:0.250:2	0/1:0,4:32:4:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,41:32:41:1.00:2
chr7	21628242	rs62441683	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,11:32:37:0.297:2	0/1:21,7:32:28:0.250:2	./.	./.	./.	0/1:17,18:32:35:0.514:2	./.	./.	./.	0/1:18,13:31:31:0.419:2	0/1:21,19:31:40:0.475:2
chr7	21630982	rs4615458	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:33,24:29:57:0.421:2	0/1:25,21:29:46:0.457:2	./.	0/1:48,34:30:82:0.415:2	./.	0/1:41,42:28:83:0.506:2	0/1:57,56:28:113:0.496:2	0/1:108,4:30:112:0.036:2	./.	0/1:0,77:30:77:1.00:2	0/1:36,34:29:70:0.486:2
chr7	21639572	rs17144747	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,21:33:49:0.429:2	./.	./.	./.	./.
chr7	21640361	rs10269582	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,34:32:63:0.540:2	0/1:21,28:31:49:0.571:2	0/1:0,9:28:9:1.00:2	0/1:36,55:33:91:0.604:2	0/1:1,78:32:79:0.987:2	./.	./.	0/1:2,106:32:108:0.981:2	0/1:3,82:33:85:0.965:2	./.	0/1:49,33:33:82:0.402:2
chr7	21640386	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,7:31:94:0.074:2
chr7	21640405	rs10224537	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,44:30:80:0.550:2	0/1:21,30:30:51:0.588:2	0/1:0,8:29:8:1.00:2	0/1:1,87:30:88:0.989:2	0/1:0,69:30:69:1.00:2	0/1:41,56:30:97:0.577:2	0/1:50,35:30:85:0.412:2	0/1:0,104:29:104:1.00:2	0/1:0,89:30:89:1.00:2	0/1:0,76:30:76:1.00:2	0/1:0,90:29:90:1.00:2
chr7	21641218	rs3827657	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,12:33:25:0.480:2	0/1:9,10:33:19:0.526:2	./.	0/1:0,44:32:44:1.00:2	0/1:0,37:32:37:1.00:2	0/1:22,12:32:34:0.353:2	0/1:14,14:33:28:0.500:2	0/1:0,40:33:40:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,34:33:34:1.00:2
chr7	21659645	rs56029521	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:127,4:33:132:0.031:2	./.	./.	0/1:66,53:33:119:0.445:2	./.	./.	./.	./.	./.	0/1:0,132:32:132:1.00:2	0/1:107,76:33:183:0.415:2
chr7	21677262	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:32:111:0.036:2	./.
chr7	21678643	rs17144835	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,43:32:140:0.307:2	./.	./.	./.	./.
chr7	21722375	rs190684500	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,7:31:20:0.350:2	./.	./.	./.	./.
chr7	21723431	rs55666134	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:91,70:31:161:0.435:2	0/1:70,40:31:110:0.364:2	./.	./.	./.	./.	./.	./.	./.	0/1:94,62:30:156:0.397:2	./.
chr7	21745139	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:122,5:27:127:0.039:2	./.	./.	./.	./.	./.	./.
chr7	21765452	rs12536928	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,23:31:62:0.371:2	0/1:16,10:32:26:0.385:2	./.	0/1:0,50:30:50:1.00:2	0/1:0,41:30:41:1.00:2	0/1:31,17:31:48:0.354:2	0/1:25,10:31:35:0.286:2	0/1:42,20:31:62:0.323:2	0/1:33,28:31:61:0.459:2	0/1:0,31:30:31:1.00:2	0/1:34,41:31:75:0.547:2
chr7	21765497	rs11768670	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,25:32:52:0.481:2	0/1:14,22:32:36:0.611:2	./.	./.	./.	0/1:20,25:31:45:0.556:2	0/1:16,20:32:36:0.556:2	./.	0/1:27,29:32:56:0.518:2	./.	0/1:35,30:31:65:0.462:2
chr7	21775369	rs68023059	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,44:31:87:0.506:2	./.	./.	0/1:47,24:31:71:0.338:2	./.	0/1:66,60:32:126:0.476:2	./.	./.
chr7	21775443	rs2072221	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,31:31:31:1.00:2	./.	0/1:0,46:31:46:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,52:31:52:1.00:2	0/1:31,22:31:53:0.415:2	0/1:49,37:31:86:0.430:2	0/1:0,64:32:64:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,76:31:76:1.00:2
chr7	21778429	rs2003417	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,21:32:47:0.447:2
chr7	21778449	rs1109806	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:30:28:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,39:28:39:1.00:2	0/1:0,32:29:32:1.00:2	0/1:0,28:29:28:1.00:2	0/1:26,14:30:40:0.350:2	0/1:2,25:30:27:0.926:2	0/1:21,15:28:36:0.417:2	0/1:0,36:30:36:1.00:2	0/1:0,45:30:45:1.00:2
chr7	21779278	rs9639393	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:33:68:1.00:2	0/1:1,28:32:29:0.966:2	0/1:7,3:31:10:0.300:2	0/1:0,68:32:68:1.00:2	0/1:1,25:32:26:0.962:2	0/1:0,72:32:72:1.00:2	0/1:17,23:33:40:0.575:2	0/1:33,43:32:76:0.566:2	0/1:19,35:33:54:0.648:2	0/1:1,54:32:55:0.982:2	0/1:0,84:33:84:1.00:2
chr7	21805095	rs35865357	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,84:31:167:0.503:2	./.	./.	./.	./.	./.	./.
chr7	21805202	rs72657373	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,20:31:43:0.465:2	./.	./.
chr7	21824122	rs6965750	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,38:32:91:0.418:2	./.	./.	./.
chr7	21856151	rs2214326	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:75,61:31:136:0.449:2	0/1:42,34:31:76:0.447:2	0/1:10,11:31:21:0.524:2	./.	0/1:76,47:30:123:0.382:2	0/1:72,78:30:150:0.520:2	./.	./.	./.	./.	0/1:0,175:31:177:1.00:2
chr7	21893993	rs4722064	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,19:31:36:0.528:2	0/1:10,9:32:19:0.474:2	./.	0/1:3,34:30:37:0.919:2	0/1:13,15:30:30:0.536:2	0/1:0,29:30:29:1.00:2	0/1:0,27:30:27:1.00:2	0/1:29,14:30:43:0.326:2	0/1:0,44:31:44:1.00:2	0/1:30,23:31:53:0.434:2	0/1:38,16:31:54:0.296:2
chr7	21901566	rs4722067	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:29:64:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,67:30:67:1.00:2	0/1:0,68:29:68:1.00:2	0/1:0,93:30:93:1.00:2	0/1:1,67:29:68:0.985:2	0/1:2,66:29:68:0.971:2	0/1:43,27:30:70:0.386:2	0/1:1,67:29:68:0.985:2
chr7	21901593	rs12666072	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:32:62:0.066:2	./.	./.
chr7	21907546	rs183205457	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:30:47:0.085:2
chr7	21924014	rs6461613	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:30:42:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,3:31:3:1.00:2	0/1:2,29:31:31:0.935:2	0/1:0,40:30:40:1.00:2	0/1:1,33:29:34:0.971:2	0/1:0,40:30:40:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,42:30:42:1.00:2	0/1:36,33:29:69:0.478:2
chr7	21932044	rs12537531	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,25:32:44:0.568:2	0/1:11,24:31:35:0.686:2	./.	0/1:1,33:31:34:0.971:2	0/1:19,16:31:35:0.457:2	0/1:29,19:31:48:0.396:2	0/1:20,5:32:25:0.200:2	./.	0/1:28,29:32:57:0.509:2	0/1:23,9:31:32:0.281:2	0/1:25,14:32:39:0.359:2
chr7	21934511	rs72658825	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,72:32:165:0.436:2	./.	./.
chr7	21939032	rs56333627	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:53,44:29:97:0.454:2	0/1:28,23:30:51:0.451:2	0/1:4,3:30:7:0.429:2	./.	0/1:51,42:30:93:0.452:2	0/1:51,44:30:95:0.463:2	0/1:61,46:29:107:0.430:2	0/1:71,76:30:147:0.517:2	0/1:48,64:31:112:0.571:2	0/1:47,48:31:95:0.505:2	./.
chr7	21940816	rs143362381	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,5:31:6:0.833:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	21940823	rs77448980	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,58:32:115:0.504:2	./.	./.	./.
chr7	21946177	rs74997026	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,24:31:52:0.462:2	0/1:19,13:31:32:0.406:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	21956405	rs1128250	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:29:4:1.00:2	./.	./.	0/1:34,23:31:57:0.404:2	./.	./.	./.	0/1:17,31:32:48:0.646:2	./.
chr7	22197507	rs7809342	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,114:33:114:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,127:33:127:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,120:33:120:1.00:2	0/1:0,126:32:126:1.00:2	0/1:0,135:33:135:1.00:2	0/1:0,112:33:112:1.00:2	0/1:0,157:33:157:1.00:2
chr7	22202117	rs12592	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,16:31:32:0.500:2	0/1:16,10:32:26:0.385:2	./.	0/1:21,22:32:43:0.512:2	0/1:26,11:31:37:0.297:2	0/1:33,16:31:49:0.327:2	0/1:16,16:32:32:0.500:2	0/1:1,52:32:53:0.981:2	0/1:19,7:32:26:0.269:2	0/1:30,15:32:45:0.333:2	0/1:0,60:32:60:1.00:2
chr7	22259562	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,4:31:83:0.048:2	./.	./.	./.	./.	./.	./.	./.
chr7	22478207	rs2528843	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,17:33:35:0.486:2	0/1:17,11:32:28:0.393:2	0/1:0,5:32:5:1.00:2	0/1:21,29:32:50:0.580:2	0/1:19,9:33:28:0.321:2	0/1:31,17:30:48:0.354:2	0/1:18,7:32:25:0.280:2	./.	0/1:34,18:32:52:0.346:2	0/1:0,35:32:35:1.00:2	0/1:2,51:32:53:0.962:2
chr7	22532260	rs62447564	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,20:32:21:0.952:2	0/1:104,72:32:176:0.409:2	0/1:91,66:32:157:0.420:2	./.	./.	0/1:109,87:32:196:0.444:2	0/1:115,84:33:199:0.422:2	0/1:100,97:32:197:0.492:2	./.
chr7	22533399	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:32:155:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	22533452	rs201338533	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,30:31:73:0.411:2	0/1:17,20:31:37:0.541:2	0/1:0,7:27:7:1.00:2	0/1:1,47:30:48:0.979:2	0/1:33,16:29:49:0.327:2	0/1:31,28:29:60:0.475:2	0/1:27,16:30:43:0.372:2	0/1:41,25:30:66:0.379:2	0/1:0,39:30:39:1.00:2	0/1:25,16:30:41:0.390:2	./.
chr7	22534400	rs186012263	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,10:32:49:0.204:2	./.	./.	./.	./.	./.	./.
chr7	22857682	rs28617621	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,42:33:42:1.00:2	./.	./.	0/1:15,11:34:26:0.423:2	./.	./.	./.	0/1:0,44:33:44:1.00:2
chr7	22999962	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:33:196:0.020:2
chr7	23015831	rs3735231	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,9:32:22:0.409:2	0/1:22,9:30:31:0.290:2	./.	./.	0/1:0,31:29:31:1.00:2	0/1:28,17:30:45:0.378:2	0/1:10,6:32:16:0.375:2	0/1:9,24:31:33:0.727:2	0/1:29,17:31:46:0.370:2	0/1:12,8:32:20:0.400:2	./.
chr7	23164701	rs15775	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:31:6:0.667:2	0/1:53,35:31:88:0.398:2	0/1:20,29:31:49:0.592:2	0/1:34,40:31:74:0.541:2	./.	./.	./.	0/1:37,34:32:71:0.479:2	./.
chr7	23236835	rs41273975	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,9:31:26:0.346:2	./.	./.	./.	./.	./.	./.
chr7	23240263	rs13243961	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,15:32:32:0.469:2	0/1:4,6:31:10:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	23296518	.	T	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:129,12:14:141:0.085:2	./.	./.	./.	0/1:116,12:15:128:0.094:2	0/1:147,26:11:173:0.150:2	0/1:135,35:9:170:0.206:2	./.	./.	0/1:112,14:12:126:0.111:2	0/1:138,23:13:162:0.143:2
chr7	23296533	rs199355	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,13:29:30:0.433:2	0/1:81,71:30:153:0.467:2	0/1:73,52:30:125:0.416:2	0/1:74,72:29:147:0.493:2	./.	0/1:89,78:30:167:0.467:2	./.	0/1:64,55:30:119:0.462:2	0/1:61,91:31:153:0.599:2
chr7	23299684	rs149547294	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,70:32:156:0.449:2	./.	./.	./.
chr7	23352431	rs145056288	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,81:30:193:0.420:2	./.	./.	./.
chr7	23353160	rs79900450	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,4:33:59:0.068:2	./.	./.	./.	./.	./.	./.	./.
chr7	23357288	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:186,5:32:191:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr7	23357291	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,5:30:189:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr7	23357321	rs156414	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,55:33:111:0.495:2	0/1:43,26:32:69:0.377:2	0/1:3,15:32:18:0.833:2	0/1:84,86:33:170:0.506:2	./.	./.	0/1:2,156:33:158:0.987:2	0/1:76,69:33:145:0.476:2	0/1:64,87:34:151:0.576:2	0/1:65,66:33:131:0.504:2	0/1:83,78:33:161:0.484:2
chr7	23391012	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:87,4:30:91:0.044:2	./.	./.	./.	./.	./.	./.
chr7	23391043	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,4:31:49:0.082:2	./.	./.	./.	./.	./.	./.
chr7	23508105	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,6:31:135:0.044:2	./.
chr7	23545195	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,9:10:21:0.429:2	./.	./.	./.	./.	./.
chr7	23545197	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,7:18:19:0.368:2	./.	0/1:14,6:17:20:0.300:2	./.	0/1:9,5:17:14:0.357:2	./.
chr7	23545203	rs58357547	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,7:16:17:0.412:2	0/1:12,4:21:16:0.250:2
chr7	23545204	rs5882904	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,9:15:19:0.474:2	0/1:13,9:12:22:0.409:2	./.	0/1:14,7:16:21:0.333:2	./.	0/1:8,7:20:15:0.467:2	0/1:12,4:21:16:0.250:2
chr7	23545399	rs35281714	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,97:32:165:0.588:2	./.	./.	./.	./.	./.
chr7	23545857	rs138326382	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,4:31:26:0.154:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	23552608	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,19:32:60:0.317:2	./.	./.	./.	./.
chr7	23728916	rs34518648	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,17:32:38:0.447:2	0/1:9,8:32:17:0.471:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	23728931	rs35495590	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,20:30:43:0.465:2	0/1:10,12:31:22:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	23737891	rs35928055	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,50:33:110:0.455:2	0/1:42,36:32:78:0.462:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	23751736	rs7779633	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,102:33:102:1.00:2	0/1:0,54:33:54:1.00:2	./.	0/1:67,50:32:117:0.427:2	0/1:1,56:31:57:0.982:2	./.	0/1:29,38:32:67:0.567:2	0/1:62,62:33:124:0.500:2	0/1:70,74:34:144:0.514:2	./.	0/1:78,90:34:169:0.536:2
chr7	23757162	rs6945306	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:95,4:30:99:0.040:2	0/1:16,5:29:21:0.238:2	./.	./.	0/1:87,78:29:165:0.473:2	0/1:63,60:30:123:0.488:2	0/1:92,87:29:179:0.486:2	./.	./.	0/1:82,99:29:181:0.547:2
chr7	23775454	rs10264952	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	0/1:19,18:30:37:0.486:2	./.	./.	0/1:17,27:31:44:0.614:2	0/1:0,26:31:26:1.00:2	./.
chr7	23775477	rs10264967	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,15:31:30:0.500:2	./.	./.	0/1:13,18:33:31:0.581:2	0/1:0,17:33:17:1.00:2	./.
chr7	23793953	rs35995607	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,33:32:61:0.541:2	./.	./.	./.	./.	./.	./.
chr7	23811795	rs10263079	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:24,15:34:39:0.385:2	0/1:21,6:33:27:0.222:2	./.	0/1:32,19:33:51:0.373:2	./.	0/1:12,11:32:23:0.478:2	./.	./.	0/1:31,22:34:53:0.415:2	0/1:0,22:33:22:1.00:2	./.
chr7	23811800	rs10247878	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:26,16:32:42:0.381:2	0/1:23,8:32:31:0.258:2	./.	0/1:35,21:31:56:0.375:2	./.	0/1:14,12:31:26:0.462:2	./.	./.	./.	0/1:0,24:31:24:1.00:2	./.
chr7	23825106	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:33:91:0.044:2	./.
chr7	23825193	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,4:30:56:0.071:2	./.	./.	./.	./.	./.	./.
chr7	23871898	rs35517396	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,6:31:20:0.300:2	./.	./.	./.	./.	./.	./.
chr7	24325009	rs5573	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,17:32:40:0.425:2	0/1:9,9:31:18:0.500:2	0/1:0,6:32:6:1.00:2	0/1:23,25:32:48:0.521:2	0/1:45,38:32:83:0.458:2	0/1:25,15:32:40:0.375:2	0/1:30,22:32:52:0.423:2	0/1:51,32:32:83:0.386:2	./.	./.	0/1:14,18:32:32:0.563:2
chr7	24329133	rs5574	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,16:33:30:0.533:2	0/1:10,15:31:25:0.600:2	0/1:0,2:31:2:1.00:2	0/1:17,8:32:25:0.320:2	0/1:12,12:30:24:0.500:2	0/1:13,10:32:23:0.435:2	0/1:15,16:32:31:0.516:2	0/1:17,14:32:31:0.452:2	./.	./.	0/1:13,33:32:46:0.717:2
chr7	24703298	rs1053962	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:31:38:1.00:2	0/1:0,16:33:16:1.00:2	0/1:2,3:30:5:0.600:2	0/1:24,10:32:34:0.294:2	./.	./.	./.	0/1:17,10:32:27:0.370:2	0/1:20,19:33:39:0.487:2	./.	./.
chr7	24742436	rs17149912	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,14:27:37:0.378:2	./.	0/1:10,15:26:25:0.600:2	./.	./.	./.	./.	0/1:25,25:26:50:0.500:2
chr7	24746946	rs75743828	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,25:29:61:0.410:2	0/1:31,14:31:45:0.311:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	24747002	rs186488799	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,57:32:95:0.600:2	./.	./.	./.	./.	./.	./.
chr7	24756951	rs12540919	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,15:32:36:0.417:2	0/1:23,10:31:33:0.303:2	./.	./.	./.	./.	./.	./.	0/1:31,22:32:53:0.415:2	./.	./.
chr7	24758753	rs754555	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:44,28:31:72:0.389:2	0/1:28,18:32:46:0.391:2	./.	0/1:66,49:31:115:0.426:2	./.	./.	./.	./.	0/1:64,41:32:105:0.390:2	./.	./.
chr7	24758795	rs876305	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,21:33:55:0.382:2	0/1:21,12:32:33:0.364:2	0/1:4,5:32:9:0.556:2	0/1:53,33:33:86:0.384:2	./.	./.	./.	0/1:54,50:31:104:0.481:2	0/1:48,22:33:70:0.314:2	./.	0/1:36,36:31:72:0.500:2
chr7	24758818	rs754554	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:28,21:31:49:0.429:2	0/1:17,14:32:31:0.452:2	./.	0/1:37,18:32:55:0.327:2	./.	./.	./.	./.	0/1:32,14:32:46:0.304:2	./.	./.
chr7	24854765	rs1044956	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,31:32:54:0.574:2	0/1:21,18:31:39:0.462:2	./.	0/1:34,21:31:55:0.382:2	0/1:43,18:31:61:0.295:2	./.	./.	./.	0/1:44,28:32:72:0.389:2	0/1:18,15:31:33:0.455:2	0/1:27,24:32:51:0.471:2
chr7	24903139	rs17851558	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:117,77:32:194:0.397:2	./.	0/1:112,85:32:197:0.431:2	./.	./.	./.	./.
chr7	24910408	rs41275970	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,62:33:112:0.559:2	./.	./.	./.
chr7	24911357	rs6952815	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,22:30:44:0.500:2	./.	./.	./.	./.
chr7	25175734	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:33:100:0.040:2
chr7	25181912	rs2285738	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,44:29:46:0.957:2	0/1:1,20:28:21:0.952:2	./.	0/1:32,22:28:54:0.407:2	0/1:1,42:29:43:0.977:2	0/1:30,28:28:58:0.483:2	0/1:32,24:30:56:0.429:2	0/1:0,71:29:71:1.00:2	./.	0/1:30,29:29:59:0.492:2	0/1:0,69:29:69:1.00:2
chr7	25182373	rs17150982	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,15:32:40:0.375:2	0/1:41,20:31:61:0.328:2	./.	0/1:36,22:31:58:0.379:2	./.
chr7	25182405	rs11984293	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,33:33:69:0.485:2	./.	./.
chr7	25194665	rs2523072	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:67,41:32:108:0.380:2	0/1:27,16:32:43:0.372:2	0/1:6,8:32:14:0.571:2	0/1:0,73:33:73:1.00:2	0/1:41,33:32:74:0.446:2	./.	./.	0/1:53,33:33:86:0.384:2	0/1:55,37:34:92:0.402:2	0/1:38,38:32:76:0.500:2	0/1:1,108:33:109:0.991:2
chr7	25194753	rs12535348	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,44:31:109:0.404:2	0/1:35,20:31:55:0.364:2	0/1:16,10:31:26:0.385:2	0/1:74,66:30:140:0.471:2	0/1:73,56:30:129:0.434:2	./.	./.	0/1:68,97:31:165:0.588:2	0/1:86,53:31:140:0.381:2	./.	0/1:0,124:30:124:1.00:2
chr7	25198089	rs2523066	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:34:14:0.571:2	./.	./.	./.	./.	./.	0/1:9,4:34:13:0.308:2	./.
chr7	25207974	rs2717858	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,87:32:171:0.509:2	./.	./.	./.	./.	./.	0/1:83,74:32:157:0.471:2	./.
chr7	25207994	rs2717857	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,81:32:161:0.503:2	./.	./.	./.	./.	./.	0/1:75,62:32:137:0.453:2	./.
chr7	25266400	rs2717851	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,68:33:150:0.453:2	0/1:56,47:32:103:0.456:2	0/1:6,11:32:17:0.647:2	0/1:97,82:32:179:0.458:2	0/1:96,91:32:187:0.487:2	./.	0/1:3,165:32:168:0.982:2	0/1:84,96:32:180:0.533:2	./.	0/1:70,96:32:166:0.578:2	0/1:171,5:32:176:0.028:2
chr7	25266458	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,52:30:125:0.416:2	./.
chr7	25267934	rs877834	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,20:33:55:0.364:2	./.	0/1:0,58:31:58:1.00:2	./.	./.	./.	0/1:37,29:33:66:0.439:2	./.
chr7	25267963	rs886354	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:33:63:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,68:33:68:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,68:32:69:1.00:2	0/1:0,103:33:103:1.00:2	0/1:0,82:33:82:1.00:2	0/1:0,126:32:126:1.00:2
chr7	26192662	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.
chr7	26224156	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:31:109:0.037:2	./.	./.	./.
chr7	26224224	rs201667846	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,5:33:200:0.025:2	./.	./.
chr7	26224382	rs151210268	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:32:85:0.047:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	26224668	rs2074566	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,12:30:12:1.00:2	./.	./.	./.	0/1:50,29:30:79:0.367:2	0/1:2,89:31:91:0.978:2	./.	./.	./.
chr7	26225012	rs188935785	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,41:30:87:0.471:2	./.	./.	./.	./.
chr7	26225189	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.	./.	./.	./.
chr7	26251371	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:32:152:0.026:2
chr7	26251803	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:31:127:0.031:2	0/1:124,4:32:128:0.031:2	./.	./.
chr7	26251820	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:31:95:0.042:2	0/1:74,4:32:78:0.051:2	./.	./.
chr7	26386122	rs3801891	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,20:32:44:0.455:2	0/1:13,7:32:20:0.350:2	./.	0/1:1,53:32:54:0.981:2	0/1:13,8:29:21:0.381:2	./.	./.	0/1:0,35:32:35:1.00:2	0/1:26,18:33:44:0.409:2	0/1:0,26:33:26:1.00:2	./.
chr7	26576535	rs740182	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,71:31:158:0.449:2	0/1:70,50:32:120:0.417:2	0/1:0,27:32:27:1.00:2	0/1:1,176:32:177:0.994:2	0/1:0,175:32:175:1.00:2	0/1:0,184:32:184:1.00:2	0/1:73,114:32:187:0.610:2	0/1:2,181:32:183:0.989:2	0/1:89,103:33:192:0.536:2	0/1:0,173:32:173:1.00:2	0/1:113,75:32:188:0.399:2
chr7	26578105	rs17153822	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,26:32:60:0.433:2	./.	./.	0/1:38,42:32:80:0.525:2	./.	./.	./.
chr7	26678856	rs57000259	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,8:32:23:0.348:2	0/1:14,22:34:36:0.611:2	./.	./.	./.	./.
chr7	26685934	rs12671270	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,12:30:41:0.293:2	0/1:22,16:32:38:0.421:2	./.	./.	./.	./.
chr7	26765596	rs1129771	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,6:32:10:0.600:2	./.	./.	./.	./.	./.
chr7	26778406	rs10951145	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	0/1:0,11:27:11:1.00:2	./.	0/1:1,5:30:6:0.833:2	./.	0/1:15,11:28:26:0.423:2	0/1:0,9:29:9:1.00:2	0/1:0,21:30:21:1.00:2
chr7	26904007	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:30:116:0.034:2	./.	./.	./.	./.
chr7	27135096	rs45571645	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,28:31:61:0.459:2
chr7	27135214	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,4:33:90:0.044:2	./.	./.	./.	./.	./.	./.	./.
chr7	27135314	rs10951154	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:28:39:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,40:29:40:1.00:2	0/1:17,18:28:36:0.514:2	./.	0/1:0,20:30:20:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,27:30:27:1.00:2
chr7	27169093	rs2158218	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,69:33:70:0.986:2	0/1:0,30:32:30:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,78:33:78:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,82:33:82:1.00:2
chr7	27181592	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:30:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	27185520	rs17500863	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,15:29:37:0.405:2	./.
chr7	27196069	rs2301720	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,29:28:29:1.00:2	0/1:0,15:30:15:1.00:2	./.	0/1:0,40:28:40:1.00:2	0/1:14,14:29:28:0.500:2	0/1:7,10:27:17:0.588:2	0/1:0,21:29:21:1.00:2	0/1:11,14:28:25:0.560:2	0/1:0,15:31:15:1.00:2	0/1:20,11:30:31:0.355:2	0/1:0,33:29:33:1.00:2
chr7	27196113	rs2301721	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,28:26:33:0.848:2	0/1:1,11:30:12:0.917:2	./.	0/1:3,34:24:37:0.919:2	0/1:12,10:26:22:0.455:2	0/1:11,6:27:17:0.353:2	0/1:0,19:28:19:1.00:2	0/1:11,12:26:23:0.522:2	0/1:2,14:23:16:0.875:2	./.	0/1:2,25:26:28:0.926:2
chr7	27204732	rs35355140	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,28:31:28:1.00:2	./.	./.	0/1:10,4:31:14:0.286:2	./.	./.	./.	./.
chr7	27204773	rs200450890	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr7	27205015	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	27211548	rs34957925	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:33,32:32:65:0.492:2	0/1:23,29:32:52:0.558:2	./.	./.	0/1:31,22:30:53:0.415:2	./.	./.	0/1:33,40:31:73:0.548:2	./.	./.	./.
chr7	27211740	rs373506576	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,84:31:184:0.457:2
chr7	27285806	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.
chr7	27702390	rs11550134	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:29:8:0.625:2	./.	./.	./.	./.	0/1:0,6:29:6:1.00:2	./.	0/1:1,2:31:3:0.667:2
chr7	27827103	rs11540483	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,34:30:68:0.500:2	./.	0/1:23,28:31:51:0.549:2	./.	0/1:30,25:30:55:0.455:2	./.	./.	./.
chr7	27886171	rs6462054	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,78:33:80:0.987:2	0/1:0,41:32:41:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,73:33:73:1.00:2	0/1:1,59:32:60:0.983:2	0/1:0,82:32:82:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,90:33:90:1.00:2	0/1:0,74:33:74:1.00:2	0/1:0,87:32:88:1.00:2	0/1:0,95:32:95:1.00:2
chr7	27953035	rs210	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:32,13:32:45:0.289:2	0/1:10,9:32:19:0.474:2	0/1:2,5:33:7:0.714:2	./.	./.	0/1:34,29:33:63:0.460:2	./.	0/1:1,64:32:65:0.985:2	0/1:31,25:32:56:0.446:2	0/1:48,26:32:74:0.351:2	0/1:50,41:32:91:0.451:2
chr7	28319007	rs177483	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,15:29:28:0.536:2	./.	./.	./.	0/1:1,28:31:29:0.966:2	0/1:16,11:29:27:0.407:2
chr7	28319234	rs177484	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,17:32:42:0.405:2	0/1:18,18:32:36:0.500:2	0/1:0,13:32:13:1.00:2	0/1:28,42:32:70:0.600:2	./.	0/1:28,34:30:62:0.548:2	0/1:87,4:33:91:0.044:2	0/1:43,35:32:78:0.449:2	./.	0/1:0,71:32:71:1.00:2	0/1:0,58:32:58:1.00:2
chr7	28995719	rs374090229	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,4:31:9:0.444:2	./.
chr7	28995800	rs61742220	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,4:29:10:0.400:2	./.	./.	0/1:5,10:27:15:0.667:2	./.	0/1:2,4:31:6:0.667:2	0/1:3,3:32:6:0.500:2
chr7	28996220	rs1006521	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	0/1:0,5:32:5:1.00:2	./.	./.	./.	0/1:0,3:34:3:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.
chr7	28996557	rs3735562	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,4:29:8:0.500:2	./.	./.	0/1:6,5:28:11:0.455:2	0/1:2,3:32:5:0.600:2	0/1:0,5:30:5:1.00:2	./.
chr7	28996944	rs740250	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,48:31:49:0.980:2	0/1:0,33:31:33:1.00:2	0/1:0,7:33:7:1.00:2	0/1:41,32:33:73:0.438:2	0/1:0,63:31:63:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,32:31:32:1.00:2	0/1:39,21:32:60:0.350:2	0/1:0,42:33:42:1.00:2	0/1:0,28:32:28:1.00:2	0/1:30,17:30:48:0.362:2
chr7	28997141	rs6950750	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.	0/1:43,30:28:73:0.411:2	./.	./.	0/1:39,17:29:58:0.304:2	0/1:32,32:30:64:0.500:2	0/1:0,39:29:39:1.00:2	0/1:28,20:30:48:0.417:2
chr7	28997765	rs740252	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,4:33:4:1.00:2	0/1:0,2:33:2:1.00:2	./.	0/1:5,5:32:10:0.500:2	0/1:12,6:32:18:0.333:2	0/1:1,23:31:24:0.958:2	0/1:12,9:30:21:0.429:2	./.	0/1:11,4:33:15:0.267:2	./.	./.
chr7	29070209	rs7313	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,99:31:104:0.961:2	0/1:3,68:31:72:0.958:2	0/1:15,7:31:22:0.318:2	0/1:46,68:31:114:0.596:2	./.	0/1:66,59:30:125:0.472:2	0/1:37,29:29:66:0.439:2	./.	0/1:1,135:32:136:0.993:2	./.	./.
chr7	29070320	rs1052200	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,64:30:120:0.538:2
chr7	29103771	rs145255289	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,46:32:100:0.460:2	./.	./.	./.
chr7	29111451	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:34:152:0.026:2	./.	./.	./.	./.
chr7	29111525	rs146943108	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,43:33:92:0.467:2	./.	./.	./.
chr7	29132279	rs117744081	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:33:7:0.571:2	./.	./.	./.	0/1:38,40:32:78:0.513:2	./.	./.	./.	./.
chr7	29152371	rs323182	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,21:33:65:0.323:2	0/1:37,33:34:70:0.471:2	./.	./.
chr7	29152416	rs2011337	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,22:31:58:0.379:2	0/1:38,24:32:62:0.387:2	./.	./.
chr7	29160604	rs34219043	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,5:28:12:0.417:2	0/1:51,33:30:85:0.393:2	./.	./.	./.	0/1:60,47:31:107:0.439:2	0/1:52,47:32:99:0.475:2	./.	./.
chr7	29186256	rs245880	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:43,29:29:72:0.403:2	0/1:19,22:29:41:0.537:2	0/1:5,8:29:13:0.615:2	./.	0/1:44,40:29:84:0.476:2	0/1:0,69:30:69:1.00:2	./.	0/1:53,47:29:100:0.470:2	0/1:44,33:29:77:0.429:2	0/1:48,41:30:89:0.461:2	0/1:45,44:28:89:0.494:2
chr7	29186352	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,9:16:49:0.184:2	./.	./.	./.	./.	./.	./.
chr7	29186576	rs245881	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,39:30:39:1.00:2	0/1:0,15:30:15:1.00:2	./.	0/1:26,24:30:50:0.480:2	0/1:0,63:30:63:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,66:30:66:1.00:2	0/1:38,30:30:68:0.441:2	0/1:19,25:31:44:0.568:2	0/1:20,14:29:34:0.412:2	0/1:16,35:30:51:0.686:2
chr7	29433356	rs57232784	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,69:32:118:0.585:2	0/1:43,36:32:79:0.456:2	./.	./.	./.	0/1:58,58:33:116:0.500:2	0/1:1,103:33:104:0.990:2	./.
chr7	29440195	rs34045356	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,20:31:32:0.625:2	./.	./.	./.	0/1:18,15:33:33:0.455:2	0/1:0,30:31:30:1.00:2	./.
chr7	29519929	rs3750103	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,78:30:172:0.453:2	./.	./.	./.	./.	0/1:100,73:30:173:0.422:2	./.
chr7	29523562	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:34:104:0.039:2
chr7	29523563	rs12665897	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,22:32:59:0.373:2	./.	./.	./.	0/1:47,38:33:85:0.447:2	./.	./.
chr7	29605975	rs2302618	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,2:31:2:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,3:26:3:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,6:31:6:1.00:2	./.	./.	0/1:0,2:27:2:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,3:30:3:1.00:2
chr7	29606288	rs10271996	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,13:32:31:0.419:2	0/1:3,49:31:52:0.942:2	./.	0/1:9,12:33:21:0.571:2	0/1:10,23:31:33:0.697:2	0/1:0,40:33:40:1.00:2	0/1:18,9:32:27:0.333:2	./.
chr7	29606316	rs112093295	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,19:30:38:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr7	29606425	rs2302619	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,28:30:61:0.459:2	0/1:26,19:31:45:0.422:2	./.	./.	./.	0/1:26,38:31:64:0.594:2
chr7	29918677	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:32:69:0.058:2	./.	./.	./.	./.	./.
chr7	29923572	rs28439342	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:28:9:1.00:2	0/1:0,7:27:7:1.00:2	./.	./.	0/1:0,11:30:11:1.00:2	./.	./.	./.	./.	0/1:13,6:30:19:0.316:2	./.
chr7	29923970	rs174965	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:32:6:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr7	29954137	rs1056061	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:29,45:33:74:0.608:2	0/1:24,14:32:38:0.368:2	./.	./.	0/1:35,31:31:66:0.470:2	0/1:28,61:32:89:0.685:2	0/1:1,87:32:88:0.989:2	./.	0/1:55,55:33:110:0.500:2	./.	./.
chr7	29954159	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:28:86:0.047:2	./.	./.
chr7	30066055	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:30:109:0.037:2	./.	./.	./.	./.
chr7	30087502	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,6:32:142:0.042:2	./.	./.	./.
chr7	30094419	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,6:32:189:0.032:2	./.	./.	./.
chr7	30113706	rs11977829	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,188:29:190:0.989:2	0/1:0,110:28:110:1.00:2	./.	./.	0/1:92,77:28:169:0.456:2	0/1:92,107:28:199:0.538:2	0/1:1,126:28:127:0.992:2	./.	0/1:104,94:29:198:0.475:2	0/1:105,78:29:183:0.426:2	./.
chr7	30129766	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:33:106:0.038:2	./.	./.	./.
chr7	30129808	rs77266350	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:30:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	30174773	rs73689406	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,16:24:28:0.571:2	0/1:10,7:25:17:0.412:2	./.	./.	0/1:25,26:28:51:0.510:2	0/1:16,26:26:42:0.619:2	0/1:0,72:27:72:1.00:2	./.	0/1:15,16:26:31:0.516:2	./.	./.
chr7	30177278	rs6954379	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,16:32:45:0.356:2	0/1:11,17:32:28:0.607:2	./.	0/1:10,14:33:24:0.583:2	./.	./.	0/1:21,18:33:39:0.462:2	0/1:35,28:32:63:0.444:2
chr7	30468989	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.	./.	./.	./.
chr7	30491311	rs2075821	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,30:32:30:1.00:2	0/1:0,16:31:16:1.00:2	./.	./.	0/1:18,7:29:25:0.280:2	0/1:15,14:31:29:0.483:2	0/1:22,17:30:39:0.436:2	./.	0/1:0,32:32:32:1.00:2	0/1:12,12:31:24:0.500:2	./.
chr7	30492237	rs2075820	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,22:30:22:1.00:2	0/1:0,21:32:21:1.00:2	./.	./.	0/1:17,11:32:28:0.393:2	0/1:20,20:31:40:0.500:2	0/1:28,15:31:43:0.349:2	./.	0/1:0,23:32:23:1.00:2	0/1:15,11:29:26:0.423:2	./.
chr7	30492550	rs2235099	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,46:30:47:1.00:2	0/1:1,29:31:30:0.967:2	./.	./.	0/1:52,40:30:92:0.435:2	0/1:37,42:29:79:0.532:2	0/1:58,52:29:110:0.473:2	./.	0/1:0,68:30:68:1.00:2	0/1:41,26:29:67:0.388:2	./.
chr7	30496382	rs2075818	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,110:30:110:1.00:2	0/1:1,64:31:65:0.985:2	./.	./.	0/1:92,52:31:144:0.361:2	0/1:60,50:31:110:0.455:2	0/1:66,67:31:133:0.504:2	./.	0/1:0,96:32:96:1.00:2	0/1:47,58:31:105:0.552:2	./.
chr7	30634548	rs62636572	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	./.	./.	./.
chr7	30655542	rs11553502	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:38,10:32:48:0.208:2	0/1:17,14:29:31:0.452:2	./.	0/1:33,29:31:62:0.468:2	./.	./.	./.	./.	./.	./.	./.
chr7	30668279	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,4:31:133:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr7	30671087	rs14270	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,9:30:33:0.273:2	0/1:11,5:29:16:0.313:2	0/1:5,6:31:11:0.545:2	0/1:31,22:31:53:0.415:2	./.	./.	./.	./.	./.	./.	./.
chr7	30673401	rs4593	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,9:31:23:0.391:2	0/1:13,7:28:20:0.350:2	0/1:7,4:31:11:0.364:2	0/1:25,19:29:44:0.432:2	./.	./.	./.	./.	./.	./.	./.
chr7	30694637	rs202081523	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:33:57:0.070:2	./.	./.
chr7	30695202	rs2240403	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,18:31:41:0.439:2	0/1:25,16:31:41:0.390:2	./.	./.	0/1:32,24:32:56:0.429:2	./.	./.
chr7	30695574	rs192930404	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:85,87:30:172:0.506:2	./.	./.	./.	./.	./.	./.
chr7	30701812	rs8192498	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,92:32:194:0.474:2	./.	./.
chr7	30702347	rs34625936	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,56:32:96:0.583:2	./.	./.
chr7	30791848	rs4723010	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:32:6:0.667:2	0/1:2,64:31:66:0.970:2	./.	0/1:1,90:31:91:0.989:2	0/1:64,47:31:111:0.423:2	0/1:46,46:32:92:0.500:2	0/1:47,37:33:84:0.440:2	./.	./.
chr7	30795288	rs2302339	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,41:29:88:0.466:2	0/1:22,19:29:41:0.463:2	0/1:0,8:29:8:1.00:2	0/1:60,56:30:116:0.483:2	./.	0/1:52,68:30:120:0.567:2	0/1:75,77:30:154:0.507:2	./.	0/1:51,60:30:111:0.541:2	0/1:43,38:29:81:0.469:2	./.
chr7	30795331	rs2302340	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:39,38:32:77:0.494:2	0/1:22,24:32:46:0.522:2	./.	./.	0/1:4,128:32:132:0.970:2	./.	./.	0/1:51,51:32:102:0.500:2	0/1:57,48:32:105:0.457:2	0/1:54,44:33:98:0.449:2	0/1:0,65:32:66:1.00:2
chr7	30795436	rs4720015	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:32:28:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,52:32:52:1.00:2	0/1:1,40:31:41:0.976:2	0/1:23,12:30:35:0.343:2	0/1:29,24:34:53:0.453:2	0/1:1,66:32:67:0.985:2	0/1:0,41:33:41:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,40:32:40:1.00:2
chr7	30811090	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:32:55:0.073:2	./.	./.
chr7	30811183	rs371170994	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,16:29:59:0.281:2	./.	0/1:10,4:29:14:0.286:2	0/1:63,24:28:87:0.276:2	0/1:65,23:25:90:0.261:2	0/1:65,21:27:86:0.244:2	0/1:61,23:26:84:0.274:2	0/1:70,38:25:108:0.352:2	0/1:66,21:27:87:0.241:2	0/1:41,17:24:58:0.293:2	0/1:32,12:25:44:0.273:2
chr7	30811189	rs374476505	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,8:28:50:0.160:2	./.	./.	0/1:59,16:28:75:0.213:2	0/1:61,13:29:74:0.176:2	0/1:61,9:30:70:0.129:2	0/1:59,13:29:72:0.181:2	0/1:71,20:27:91:0.220:2	0/1:59,15:31:74:0.203:2	0/1:47,9:29:56:0.161:2	0/1:35,9:26:44:0.205:2
chr7	30831082	rs12701034	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:31:69:1.00:2	0/1:1,36:31:37:0.973:2	0/1:0,13:31:13:1.00:2	0/1:2,89:30:91:0.978:2	0/1:66,67:31:133:0.504:2	0/1:52,54:31:106:0.509:2	0/1:0,116:31:117:1.00:2	0/1:72,71:31:143:0.497:2	0/1:37,30:31:67:0.448:2	0/1:43,42:31:85:0.494:2	./.
chr7	30831088	rs35897481	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:35,34:32:69:0.493:2	0/1:22,15:30:37:0.405:2	0/1:8,5:31:13:0.385:2	./.	./.	./.	./.	./.	./.	0/1:44,43:31:87:0.494:2	./.
chr7	30898697	rs17159526	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:24,29:31:53:0.547:2	0/1:18,22:32:40:0.550:2	0/1:6,3:32:9:0.333:2	./.	./.	./.	./.	./.	./.	0/1:34,17:33:51:0.333:2	./.
chr7	30915262	rs10215354	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:55,43:32:98:0.439:2	0/1:47,42:31:89:0.472:2	0/1:13,4:32:17:0.235:2	./.	./.	./.	./.	./.	./.	0/1:60,54:32:114:0.474:2	./.
chr7	30915263	rs10216063	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:56,44:32:100:0.440:2	0/1:47,41:31:89:0.466:2	0/1:13,4:31:17:0.235:2	./.	./.	./.	0/1:88,59:30:147:0.401:2	./.	./.	0/1:60,54:32:114:0.474:2	./.
chr7	30921903	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:28:71:0.056:2
chr7	30951658	rs28362692	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,19:29:34:0.576:2
chr7	30961790	rs28362731	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,26:30:62:0.419:2	./.	./.	./.	./.	./.	./.
chr7	31008686	rs4988496	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:22,15:31:37:0.405:2	0/1:16,10:29:26:0.385:2	./.	./.	./.	./.	./.	./.	./.	0/1:10,28:31:38:0.737:2	./.
chr7	31008691	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,15:32:38:0.395:2	0/1:13,11:31:24:0.458:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	31009576	rs4988498	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:38,29:32:67:0.433:2	0/1:19,19:32:38:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:37,41:32:78:0.526:2	./.
chr7	31124376	rs138233303	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,55:31:135:0.407:2	./.	./.	./.	./.	./.
chr7	31146223	rs35661943	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,86:31:164:0.524:2	./.	./.	./.	./.
chr7	31592733	rs7811042	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:30:23:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,34:31:34:1.00:2	0/1:18,25:30:43:0.581:2	0/1:11,17:32:28:0.607:2	0/1:0,30:32:30:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,35:31:35:1.00:2	0/1:17,17:32:34:0.500:2	./.
chr7	31594508	rs2286711	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,34:31:72:0.472:2	0/1:60,54:31:114:0.474:2	./.	./.	./.	0/1:46,46:32:92:0.500:2	0/1:50,51:32:101:0.505:2
chr7	31611758	rs67930674	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,17:30:42:0.405:2	0/1:42,24:29:66:0.364:2	./.	0/1:33,32:29:65:0.492:2	./.	0/1:46,24:30:70:0.343:2	0/1:48,54:30:102:0.529:2
chr7	31614299	rs187352726	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,93:32:182:0.511:2	./.	./.	./.	./.	./.	./.
chr7	31617733	rs6945679	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:33:76:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,49:33:49:1.00:2	0/1:2,50:33:52:0.962:2	0/1:1,68:32:69:0.986:2	0/1:0,69:33:69:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,59:32:59:1.00:2
chr7	31618008	rs10252720	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,120:30:120:1.00:2	0/1:0,71:29:71:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,155:30:155:1.00:2	0/1:1,140:29:141:0.993:2	0/1:0,152:29:152:1.00:2	0/1:0,118:30:118:1.00:2	0/1:0,181:30:181:1.00:2	0/1:1,180:30:181:0.994:2	0/1:0,108:30:108:1.00:2	0/1:0,157:30:158:1.00:2
chr7	31682453	rs4141001	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,29:32:60:0.483:2	0/1:14,25:31:39:0.641:2	0/1:0,6:31:6:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,42:30:42:1.00:2	0/1:0,69:30:69:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,87:31:87:1.00:2	0/1:44,39:32:83:0.470:2	./.	0/1:0,73:31:74:1.00:2
chr7	31682601	rs38396	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,21:32:54:0.389:2	0/1:18,20:32:38:0.526:2	./.	./.	./.	./.	./.	./.	0/1:49,23:31:72:0.319:2	0/1:25,36:32:61:0.590:2	./.
chr7	31682853	rs38397	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,9:27:19:0.474:2	0/1:7,9:28:16:0.563:2	./.	./.	./.	./.	./.	./.	0/1:13,15:30:28:0.536:2	0/1:7,13:29:20:0.650:2	./.
chr7	31683024	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,4:32:69:0.058:2	./.	./.	./.	./.	./.	./.	./.
chr7	31683410	rs10247620	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,43:31:125:0.344:2	0/1:39,32:31:71:0.451:2	0/1:0,7:30:7:1.00:2	0/1:0,113:30:113:1.00:2	0/1:0,132:31:132:1.00:2	0/1:0,108:30:108:1.00:2	0/1:0,124:30:124:1.00:2	0/1:0,139:30:139:1.00:2	0/1:54,62:31:116:0.534:2	./.	0/1:1,114:31:115:0.991:2
chr7	31690777	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:31:78:0.051:2	./.	./.	./.	./.	./.
chr7	31732084	rs36047130	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,24:30:56:0.429:2	0/1:17,13:29:30:0.433:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	31732089	rs3735422	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,38:32:85:0.447:2	./.	./.	./.	0/1:34,31:32:65:0.477:2	0/1:41,29:33:70:0.414:2
chr7	31746837	rs2072409	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,44:32:94:0.468:2	./.	0/1:39,50:30:89:0.562:2	./.	./.	./.	./.	0/1:50,34:32:84:0.405:2
chr7	31848706	rs3213709	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,36:33:71:0.507:2	0/1:26,14:32:40:0.350:2	./.	0/1:33,41:33:75:0.554:2	0/1:0,37:33:37:1.00:2	./.	./.	./.	0/1:52,29:33:81:0.358:2	./.	./.
chr7	31855569	rs2302450	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:79,57:32:137:0.419:2	0/1:57,50:33:107:0.467:2	0/1:0,17:33:17:1.00:2	0/1:80,53:32:133:0.398:2	0/1:1,71:32:72:0.986:2	./.	./.	./.	0/1:79,71:33:150:0.473:2	./.	./.
chr7	31855578	rs1860790	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,143:31:143:1.00:2	0/1:0,97:31:97:1.00:2	./.	0/1:0,127:31:128:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,185:31:185:1.00:2	0/1:0,100:31:101:1.00:2	0/1:0,181:31:181:1.00:2	0/1:0,145:32:145:1.00:2	0/1:0,155:31:155:1.00:2	0/1:1,185:31:186:0.995:2
chr7	31904557	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:33:151:0.026:2	./.	./.
chr7	31904679	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,41:32:90:0.456:2	./.	./.	./.
chr7	31920395	rs61729940	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,18:29:46:0.391:2	./.	./.	./.	0/1:32,41:32:73:0.562:2
chr7	32209425	rs977625	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:32:85:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,88:31:88:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,117:32:117:1.00:2	0/1:0,97:32:98:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,84:31:84:1.00:2
chr7	32209459	rs977626	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,45:32:93:0.484:2	0/1:29,27:32:56:0.482:2	0/1:1,12:31:13:0.923:2	0/1:64,50:31:114:0.439:2	./.	0/1:78,63:31:141:0.447:2	0/1:4,106:31:110:0.964:2	./.	0/1:0,124:32:124:1.00:2	0/1:65,58:31:123:0.472:2	0/1:65,51:31:116:0.440:2
chr7	32338337	rs215607	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:8,17:30:25:0.680:2	./.	0/1:0,11:28:11:1.00:2	0/1:0,29:29:30:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,19:29:19:1.00:2	./.	0/1:0,26:30:26:1.00:2	0/1:2,15:30:17:0.882:2	./.	0/1:3,19:30:22:0.864:2
chr7	32529936	rs1584614	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:29:48:1.00:2	0/1:0,60:29:60:1.00:2	0/1:7,3:26:10:0.300:2	0/1:0,87:30:87:1.00:2	0/1:1,97:29:98:0.990:2	0/1:1,91:30:92:0.989:2	0/1:59,61:29:120:0.508:2	0/1:0,106:29:106:1.00:2	0/1:0,89:30:89:1.00:2	0/1:49,55:29:104:0.529:2	0/1:43,49:28:92:0.533:2
chr7	32530105	rs1584613	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,30:28:30:1.00:2	0/1:0,18:29:18:1.00:2	./.	0/1:0,39:29:39:1.00:2	0/1:0,39:28:39:1.00:2	0/1:0,48:29:48:1.00:2	0/1:15,19:28:34:0.559:2	0/1:0,48:29:48:1.00:2	0/1:0,44:30:44:1.00:2	0/1:23,25:28:48:0.521:2	0/1:29,22:30:51:0.431:2
chr7	32530198	rs921407	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,36:30:36:1.00:2	0/1:0,14:31:14:1.00:2	./.	0/1:0,25:31:25:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,23:30:23:1.00:2	0/1:12,7:33:19:0.368:2	0/1:0,25:31:25:1.00:2	0/1:0,32:32:32:1.00:2	0/1:11,8:30:19:0.421:2	0/1:24,22:31:46:0.478:2
chr7	32530199	rs921408	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,36:32:36:1.00:2	0/1:0,14:32:14:1.00:2	./.	0/1:0,25:33:25:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,23:32:23:1.00:2	0/1:12,7:34:19:0.368:2	0/1:0,25:32:25:1.00:2	0/1:0,32:34:32:1.00:2	0/1:11,8:30:19:0.421:2	0/1:24,22:33:46:0.478:2
chr7	32598630	rs2290213	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,38:31:96:0.396:2	./.	./.	0/1:62,31:33:93:0.333:2	0/1:60,32:33:92:0.348:2
chr7	32598656	rs2290214	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:30:13:0.308:2	./.	./.	./.	0/1:63,39:31:102:0.382:2	./.	./.	0/1:50,28:31:78:0.359:2	0/1:60,35:33:95:0.368:2
chr7	32598816	rs52793627	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,19:32:51:0.373:2	0/1:10,11:32:21:0.524:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	32612954	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,6:32:119:0.050:2
chr7	32613020	rs1993050	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,27:32:52:0.519:2	0/1:19,22:31:41:0.537:2	./.	0/1:1,81:31:82:0.988:2	0/1:3,78:31:81:0.963:2	0/1:61,55:31:116:0.474:2	0/1:42,43:30:85:0.506:2	0/1:2,104:31:106:0.981:2	0/1:46,51:31:97:0.526:2	./.	./.
chr7	32623477	rs34778959	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,14:30:20:0.700:2	./.	./.	./.	0/1:92,57:29:149:0.383:2	./.	./.	0/1:69,56:29:125:0.448:2	0/1:92,66:29:159:0.418:2
chr7	32909133	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:31:129:0.031:2
chr7	32909182	rs752730	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,69:31:146:0.473:2	0/1:71,36:31:107:0.336:2	0/1:89,60:31:149:0.403:2	./.	./.	./.	./.	./.
chr7	33014253	rs200712661	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:29:76:0.053:2	0/1:63,8:32:71:0.113:2	./.	./.	./.
chr7	33014363	rs56034053	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,6:32:39:0.154:2	0/1:38,7:31:45:0.156:2	0/1:38,8:31:46:0.174:2	0/1:34,12:31:46:0.261:2	0/1:55,5:33:60:0.083:2	./.	0/1:53,5:27:58:0.086:2
chr7	33015987	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:133,5:32:138:0.036:2	0/1:154,8:33:162:0.049:2	./.	./.	0/1:179,4:35:183:0.022:2	./.	./.
chr7	33035875	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:31:153:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	33044951	.	C	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:102,6:31:108:0.056:2	./.	0/1:174,16:32:190:0.084:2	0/1:182,9:32:192:0.047:2	0/1:178,11:32:189:0.058:2	0/1:189,11:32:200:0.055:2	0/1:184,8:31:192:0.042:2	0/1:170,17:33:187:0.091:2	./.	./.
chr7	33054388	rs79747830	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:33:29:0.138:2	./.
chr7	33060916	rs72555744	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,89:30:191:0.466:2	./.
chr7	33060946	rs3750117	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:110,76:33:186:0.409:2	0/1:60,60:32:120:0.500:2	0/1:0,48:32:48:1.00:2	0/1:98,81:32:179:0.453:2	0/1:76,61:32:137:0.445:2	0/1:0,176:32:176:1.00:2	0/1:2,138:32:140:0.986:2	0/1:92,70:33:162:0.432:2	0/1:0,161:33:161:1.00:2	0/1:1,172:33:173:0.994:2	./.
chr7	33063679	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:32:94:0.043:2	./.	./.	./.
chr7	33075573	rs17170223	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,65:33:141:0.461:2
chr7	33134883	rs150987618	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,39:33:112:0.348:2	./.	0/1:118,50:32:168:0.298:2	0/1:82,46:32:128:0.359:2	0/1:125,52:33:177:0.294:2
chr7	33136131	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,8:24:190:0.042:2	0/1:177,8:23:185:0.043:2	./.	./.	./.	./.
chr7	33139017	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,8:32:139:0.058:2	./.	./.	./.
chr7	33139024	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,6:25:139:0.043:2	./.	./.	./.
chr7	33139025	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,5:24:78:0.064:2	./.	./.	./.	./.	./.	./.
chr7	33140378	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,5:27:96:0.052:2	./.	./.	./.	./.	./.	./.	./.
chr7	33385852	rs6974593	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:31:33:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,64:31:64:1.00:2
chr7	33388713	rs11773504	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,127:31:131:0.969:2	./.	0/1:79,67:32:146:0.459:2	0/1:51,63:31:114:0.553:2	./.
chr7	33644548	rs143963391	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,42:32:77:0.553:2	./.	./.	./.
chr7	33945225	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,12:31:29:0.414:2	./.	./.	./.	./.	./.
chr7	34009946	rs10265207	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:72,49:30:121:0.405:2	0/1:58,20:30:80:0.256:2	0/1:1,15:30:16:0.938:2	./.	0/1:74,60:29:134:0.448:2	0/1:76,59:29:136:0.437:2	0/1:98,63:30:161:0.391:2	0/1:2,156:30:160:0.987:2	./.	./.	0/1:102,83:30:186:0.449:2
chr7	34086000	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	34091570	rs117988035	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,76:30:160:0.475:2	./.	./.	./.	./.	./.
chr7	34118719	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,5:20:17:0.294:2	./.	./.	./.	0/1:18,5:19:23:0.217:2	./.	./.	./.
chr7	34125420	rs77064045	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,9:33:19:0.474:2	0/1:89,96:32:185:0.519:2	./.	0/1:93,91:32:184:0.495:2	0/1:92,71:32:163:0.436:2	./.	0/1:1,180:33:181:0.994:2	0/1:70,74:32:144:0.514:2	./.
chr7	34192762	rs6968741	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:33:92:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,136:33:136:1.00:2	0/1:0,164:33:164:1.00:2	0/1:0,149:33:149:1.00:2	0/1:101,78:33:179:0.436:2	0/1:0,159:33:159:1.00:2	0/1:0,156:34:156:1.00:2	0/1:0,86:33:86:1.00:2	0/1:0,131:33:131:1.00:2
chr7	34818113	rs324981	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:31:10:1.00:2	0/1:51,38:32:89:0.427:2	./.	0/1:47,48:31:95:0.505:2	0/1:55,48:32:103:0.466:2	./.	0/1:55,66:33:121:0.545:2	0/1:50,28:31:78:0.359:2	0/1:48,57:32:105:0.543:2
chr7	34851393	rs9655357	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,12:32:26:0.462:2	0/1:89,89:32:178:0.500:2	./.	./.	./.	./.	0/1:74,102:33:176:0.580:2	0/1:77,49:33:126:0.389:2	./.
chr7	34867124	rs34705969	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,63:31:159:0.396:2	./.	./.	./.	./.	./.	0/1:68,54:32:122:0.443:2	./.
chr7	34867182	rs17170011	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,37:32:91:0.407:2	./.	./.	./.	./.
chr7	34874038	rs727162	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,4:34:21:0.190:2	0/1:83,51:31:134:0.381:2	./.	./.	./.	0/1:136,4:33:140:0.029:2	./.	0/1:74,64:32:138:0.464:2	./.
chr7	34888989	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:33:102:0.039:2	./.
chr7	34889182	rs6972158	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:81,58:30:139:0.417:2	0/1:56,44:30:100:0.440:2	./.	0/1:153,4:32:158:0.025:2	./.	./.	0/1:68,50:29:118:0.424:2	0/1:105,77:30:182:0.423:2	./.	./.	0/1:100,81:29:181:0.448:2
chr7	34889222	rs10275028	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:65,46:30:111:0.414:2	0/1:43,32:29:75:0.427:2	./.	0/1:135,4:32:139:0.029:2	./.	./.	0/1:64,43:30:107:0.402:2	0/1:94,65:29:159:0.409:2	./.	./.	0/1:81,59:30:141:0.421:2
chr7	34917702	rs28480169	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,42:32:106:0.396:2	0/1:55,28:32:83:0.337:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	34917740	rs7809642	C	T,A	.	PASS	AC=4,2;AF=0.222,0.111;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	0/2:32:134:0.406:2	0/2:32:93:0.376:2	./.	0/1:31:192:0.434:2	./.	./.	0/1:32:197:0.332:2	0/1:32:194:0.448:2	./.	./.	0/1:32:181:0.481:2
chr7	34917768	rs116825950	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,84:32:189:0.444:2	./.	./.	./.	./.	./.	./.
chr7	34977635	rs185466334	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,22:32:80:0.275:2	./.	./.	./.
chr7	34979905	rs1637696	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,17:33:48:0.362:2	0/1:11,12:31:23:0.522:2	0/1:1,3:32:4:0.750:2	0/1:26,15:32:41:0.366:2	./.	./.	0/1:0,36:32:36:1.00:2	./.	./.	./.	0/1:14,23:32:37:0.622:2
chr7	34982211	rs202077354	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,51:34:112:0.455:2
chr7	35006563	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,18:32:59:0.305:2	./.	./.	./.	./.	./.	./.
chr7	35058177	rs10282006	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,25:34:53:0.472:2	0/1:15,19:32:34:0.559:2	0/1:7,5:30:12:0.417:2	0/1:26,25:33:51:0.490:2	./.	./.	0/1:3,41:31:44:0.932:2	./.	./.	./.	0/1:57,31:33:88:0.352:2
chr7	35242131	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,5:32:191:0.026:2	./.	./.
chr7	35280647	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,6:30:136:0.044:2	./.	./.	./.	./.
chr7	35293193	rs336283	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,22:33:22:1.00:2	0/1:0,23:32:23:1.00:2	./.	0/1:2,43:32:45:0.956:2	0/1:26,15:30:41:0.366:2	0/1:21,10:32:31:0.323:2	0/1:0,21:33:21:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,37:34:37:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,18:32:18:1.00:2
chr7	35709842	rs3779234	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,39:31:39:1.00:2	0/1:0,14:31:14:1.00:2	./.	./.	0/1:21,20:32:41:0.488:2	0/1:21,21:30:42:0.500:2	0/1:1,34:32:35:0.971:2	0/1:0,37:31:37:1.00:2	./.	./.	0/1:19,23:32:42:0.548:2
chr7	35912276	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:31:85:0.047:2
chr7	35913311	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,6:30:194:0.031:2	./.
chr7	35913324	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,6:31:188:0.032:2	./.	0/1:187,4:33:191:0.021:2	./.
chr7	35913337	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.	0/1:184,6:31:190:0.032:2	./.	0/1:189,4:32:193:0.021:2	./.
chr7	35922140	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:33:181:0.022:2
chr7	35937922	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:33:192:0.021:2	./.	./.	./.
chr7	36193995	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	36194539	rs144236439	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,39:30:81:0.481:2	./.	./.	./.	./.	./.	./.
chr7	36320821	rs196586	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,11:30:23:0.478:2	0/1:10,5:30:15:0.333:2	0/1:0,3:30:3:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,31:29:31:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,50:31:50:1.00:2
chr7	36327317	rs196594	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,80:30:171:0.471:2	./.	./.	./.	./.	./.
chr7	36338749	rs196613	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,21:27:52:0.404:2	0/1:28,27:28:55:0.491:2	0/1:0,8:29:8:1.00:2	0/1:0,104:29:104:1.00:2	0/1:0,91:28:91:1.00:2	0/1:0,84:28:84:1.00:2	0/1:0,82:28:82:1.00:2	0/1:1,109:28:110:0.991:2	0/1:0,69:28:69:1.00:2	0/1:0,48:28:48:1.00:2	0/1:0,62:29:62:1.00:2
chr7	36423500	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:32:52:0.077:2	./.	./.	./.	./.	./.
chr7	36438709	rs3735400	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:57,23:32:80:0.288:2	0/1:27,23:32:50:0.460:2	./.	./.	./.	./.	0/1:31,22:31:53:0.415:2	./.	./.	./.	./.
chr7	36445855	rs368545275	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,18:33:51:0.353:2	0/1:20,20:31:40:0.500:2	./.	./.	0/1:37,23:33:60:0.383:2	./.	0/1:25,15:33:40:0.375:2	0/1:30,37:32:67:0.552:2
chr7	36445856	rs197367	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,24:31:47:0.511:2	0/1:23,19:31:42:0.452:2	0/1:0,3:30:3:1.00:2	0/1:33,18:31:51:0.353:2	0/1:19,20:29:40:0.513:2	0/1:27,26:30:53:0.491:2	0/1:0,46:30:46:1.00:2	0/1:35,24:30:59:0.407:2	0/1:29,34:30:63:0.540:2	0/1:26,15:31:41:0.366:2	0/1:29,38:30:67:0.567:2
chr7	36446121	rs3735398	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:13,18:32:31:0.581:2	0/1:10,9:31:19:0.474:2	./.	./.	./.	./.	0/1:19,18:32:37:0.486:2	./.	./.	./.	./.
chr7	36455477	rs10224902	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:36,19:33:55:0.345:2	0/1:16,19:33:35:0.543:2	./.	./.	./.	./.	0/1:26,13:33:39:0.333:2	./.	./.	./.	./.
chr7	36459076	rs17213431	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,22:32:44:0.500:2	./.	./.	./.	./.
chr7	36465623	rs2052194	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,12:13:60:0.200:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,12:12:80:0.150:2
chr7	36483447	rs372874265	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,71:33:174:0.408:2	./.	./.
chr7	36656035	rs3735386	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,19:32:43:0.442:2	./.	./.	0/1:12,17:32:29:0.586:2	./.	./.	./.	./.
chr7	36763646	rs2228412	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,11:34:20:0.550:2	./.	./.
chr7	36763672	rs2228410	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:8,15:33:23:0.652:2	0/1:7,4:33:11:0.364:2	0/1:0,7:32:7:1.00:2	0/1:12,12:31:24:0.500:2	0/1:16,7:31:23:0.304:2	0/1:0,18:32:18:1.00:2	0/1:9,10:31:19:0.526:2	./.	./.	./.	./.
chr7	36763688	rs2228411	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,11:31:23:0.478:2	./.	./.	0/1:13,8:32:21:0.381:2	./.	0/1:19,15:33:34:0.441:2	0/1:0,20:32:20:1.00:2	0/1:0,30:32:30:1.00:2
chr7	36895342	rs13246439	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,54:32:107:0.505:2
chr7	36934509	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:191,5:31:197:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr7	37298800	rs2717968	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,33:32:35:0.943:2	0/1:0,27:31:27:1.00:2	./.	0/1:24,20:32:44:0.455:2	0/1:32,27:31:59:0.458:2	0/1:27,31:30:58:0.534:2	0/1:28,23:31:51:0.451:2	./.	./.	./.	./.
chr7	37780097	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,16:12:130:0.123:2	0/1:130,20:11:150:0.133:2	./.	./.	./.	./.	./.	./.
chr7	37780613	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,5:31:161:0.031:2	./.	./.	./.	./.	./.
chr7	37889871	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:28:55:0.073:2	./.	./.	./.	./.
chr7	37890267	rs2722372	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,25:32:62:0.403:2	./.	./.	0/1:28,27:32:55:0.491:2	0/1:51,43:31:94:0.457:2	0/1:45,28:31:74:0.384:2	0/1:32,17:32:49:0.347:2	./.
chr7	37890316	rs2598044	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,30:32:67:0.448:2	./.	./.	0/1:12,13:32:25:0.520:2	0/1:39,30:32:69:0.435:2	0/1:35,24:32:59:0.407:2	0/1:24,13:33:37:0.351:2	./.
chr7	37896896	rs3213976	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,27:31:82:0.329:2	0/1:43,27:28:70:0.386:2	./.
chr7	37901727	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:31:83:0.048:2	./.	./.	./.
chr7	37907304	rs10250905	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,106:31:108:0.981:2	0/1:1,43:29:44:0.977:2	0/1:0,16:30:16:1.00:2	0/1:62,77:31:139:0.554:2	0/1:1,75:29:76:0.987:2	0/1:0,114:30:114:1.00:2	0/1:4,91:31:95:0.958:2	0/1:78,79:30:157:0.503:2	0/1:103,85:31:188:0.452:2	0/1:62,57:30:119:0.479:2	0/1:2,186:30:188:0.989:2
chr7	37916455	rs62001868	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:37,37:31:74:0.500:2	0/1:30,14:32:44:0.318:2	./.	./.	0/1:117,4:32:121:0.033:2	./.	./.	./.	./.	./.	./.
chr7	37923923	rs62001870	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,48:33:91:0.527:2	./.	./.	./.	./.	./.	./.	./.
chr7	37934146	rs56128139	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,51:33:110:0.464:2	0/1:45,31:32:76:0.408:2	0/1:62,39:32:101:0.386:2	./.	./.	0/1:0,82:33:82:1.00:2	0/1:41,20:33:61:0.328:2	./.
chr7	37934147	rs41276027	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,51:33:110:0.464:2	0/1:45,31:33:76:0.408:2	0/1:62,39:32:101:0.386:2	./.	./.	0/1:0,82:34:82:1.00:2	0/1:39,20:33:59:0.339:2	./.
chr7	37936530	rs3213975	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:29,28:30:57:0.491:2	0/1:23,19:32:42:0.452:2	0/1:0,8:32:8:1.00:2	./.	./.	./.	./.	0/1:37,27:33:65:0.422:2	./.	./.	./.
chr7	37947103	rs1802074	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:119,76:32:195:0.390:2	0/1:84,63:32:147:0.429:2	./.	0/1:120,79:32:199:0.397:2	./.	./.	./.	./.	./.	./.	0/1:106,90:31:196:0.459:2
chr7	37947150	.	T	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:126,14:13:140:0.100:2	./.	./.	0/1:139,26:11:166:0.158:2	0/1:112,13:13:125:0.104:2	0/1:141,24:12:165:0.145:2	./.	./.	./.	0/1:125,23:14:148:0.155:2	0/1:116,15:16:131:0.115:2
chr7	37947164	rs1802073	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:78,52:29:130:0.400:2	0/1:74,55:30:130:0.426:2	./.	0/1:93,57:28:151:0.380:2	0/1:66,46:29:112:0.411:2	0/1:82,60:28:143:0.423:2	0/1:1,76:29:77:0.987:2	0/1:81,58:28:139:0.417:2	./.	./.	0/1:3,96:29:99:0.970:2
chr7	37951726	rs1132553	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,52:32:133:0.391:2	0/1:27,27:32:54:0.500:2	0/1:0,5:32:5:1.00:2	0/1:74,95:32:169:0.562:2	0/1:104,87:31:192:0.455:2	0/1:71,89:31:160:0.556:2	./.	0/1:91,102:31:193:0.528:2	0/1:2,142:32:144:0.986:2	0/1:71,65:31:136:0.478:2	./.
chr7	37951728	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2	./.	./.	./.	./.
chr7	37951735	rs61761894	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,78:33:139:0.561:2	0/1:28,29:32:57:0.509:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	37953840	rs1132552	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:80,47:33:127:0.370:2	0/1:41,40:32:81:0.494:2	./.	0/1:110,71:31:181:0.392:2	0/1:71,56:31:127:0.441:2	0/1:76,73:31:149:0.490:2	0/1:1,112:32:113:0.991:2	0/1:100,64:32:165:0.390:2	./.	0/1:75,68:32:143:0.476:2	0/1:0,162:32:162:1.00:2
chr7	37954030	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:34:137:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	37956038	rs112343199	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,33:30:67:0.493:2	./.	./.	./.	./.	./.	./.	./.
chr7	37988589	rs2044831	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:32:27:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,4:31:4:1.00:2	0/1:11,16:32:27:0.593:2	0/1:0,40:31:40:1.00:2	0/1:1,29:31:30:0.967:2	0/1:23,15:31:38:0.395:2	0/1:20,13:32:33:0.394:2	0/1:0,48:33:48:1.00:2	0/1:0,33:31:33:1.00:2	0/1:20,23:32:43:0.535:2
chr7	38254685	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:33:72:0.056:2	./.	./.	./.	./.	./.
chr7	38268395	rs7795499	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:13,10:33:23:0.435:2	0/1:6,11:32:17:0.647:2	0/1:0,4:31:4:1.00:2	./.	./.	./.	./.	0/1:21,17:31:38:0.447:2	0/1:17,8:31:25:0.320:2	0/1:10,5:32:15:0.333:2	./.
chr7	38299727	rs138027161	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:121,78:33:199:0.392:2	0/1:104,66:33:170:0.388:2	0/1:28,36:32:64:0.563:2	./.	0/1:153,45:32:198:0.227:2	./.	0/1:115,80:33:195:0.410:2	0/1:142,58:33:200:0.290:2	0/1:138,57:34:196:0.292:2	0/1:82,109:33:191:0.571:2	0/1:142,52:32:194:0.268:2
chr7	38305083	rs2007081	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:134,56:32:190:0.295:2	0/1:78,48:32:126:0.381:2	./.	./.	./.	./.	./.	./.	./.	0/1:94,70:32:164:0.427:2	./.
chr7	38305142	rs113809137	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:95,33:32:128:0.258:2	0/1:51,33:32:84:0.393:2	./.	./.	./.	./.	./.	0/1:72,63:32:135:0.467:2	./.	0/1:64,41:31:105:0.390:2	./.
chr7	38431430	rs6949992	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:29:8:0.750:2	./.	./.	./.	0/1:29,33:28:63:0.532:2	./.	./.	./.	./.
chr7	38431436	rs1058656	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,23:28:43:0.561:2	0/1:10,13:30:23:0.565:2	./.	./.	./.	./.	./.	./.	0/1:34,28:30:62:0.452:2	./.	0/1:27,25:28:52:0.481:2
chr7	38431481	rs1058655	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,25:31:46:0.543:2	0/1:10,9:32:19:0.474:2	./.	./.	./.	./.	./.	./.	0/1:32,28:33:60:0.467:2	./.	0/1:21,21:31:42:0.500:2
chr7	38431511	rs2229922	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,27:32:66:0.409:2	0/1:25,19:32:44:0.432:2	./.	./.
chr7	38433726	rs35024632	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:29:12:0.417:2	./.	./.	./.	0/1:40,23:29:63:0.365:2	./.	./.	./.	./.
chr7	38471753	rs10232299	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,112:30:113:0.991:2	0/1:0,48:29:48:1.00:2	0/1:85,60:30:145:0.414:2	./.	./.	./.	./.	0/1:83,87:30:170:0.512:2
chr7	38725804	rs11980087	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,18:32:18:1.00:2	0/1:0,11:31:11:1.00:2	./.	0/1:5,12:29:17:0.706:2	./.	./.	0/1:0,22:32:22:1.00:2	0/1:0,10:33:10:1.00:2	0/1:10,5:33:15:0.333:2	./.	0/1:6,9:33:15:0.600:2
chr7	38780883	rs6951429	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,24:33:64:0.375:2	0/1:21,8:32:29:0.276:2	0/1:0,8:31:8:1.00:2	0/1:41,18:33:59:0.305:2	0/1:23,6:33:29:0.207:2	0/1:0,40:32:40:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,65:33:65:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,52:32:52:1.00:2
chr7	38780924	rs6975410	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,28:33:68:0.412:2	0/1:16,9:32:25:0.360:2	0/1:1,4:32:5:0.800:2	0/1:35,24:32:59:0.407:2	0/1:19,4:34:23:0.174:2	0/1:0,48:32:48:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,75:33:75:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,51:33:51:1.00:2
chr7	38796570	rs2240350	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,11:31:19:0.579:2	0/1:17,22:31:39:0.564:2	./.	./.	0/1:31,20:31:51:0.392:2	0/1:16,8:32:24:0.333:2	0/1:29,10:32:39:0.256:2
chr7	38805215	rs62444122	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:32:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	38829465	rs1001476	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,29:29:73:0.397:2	./.	./.	./.
chr7	38869881	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:33:97:0.041:2	./.	./.
chr7	38937676	rs142170927	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,17:30:29:0.586:2	./.	./.	./.	./.	./.	./.
chr7	39472708	rs2302123	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,37:28:84:0.440:2	0/1:73,68:29:141:0.482:2	./.	0/1:82,53:29:135:0.393:2	0/1:94,82:30:176:0.466:2	0/1:1,108:29:109:0.991:2	./.	./.
chr7	39472846	rs2302122	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,51:32:101:0.505:2	0/1:60,72:32:132:0.545:2	./.	0/1:74,62:31:136:0.456:2	0/1:66,57:32:123:0.463:2	0/1:0,77:33:77:1.00:2	./.	./.
chr7	39500304	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:32:49:0.082:2
chr7	39504000	rs143694290	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,47:32:86:0.553:2	./.	./.	./.	./.	./.	./.
chr7	39606107	rs1051162	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:30:88:0.045:2
chr7	40037149	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,4:31:58:0.069:2	./.	./.	./.	./.	./.	./.
chr7	40172749	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:33:71:0.056:2
chr7	40228141	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:32:106:0.038:2	./.	./.	./.	./.
chr7	40314165	rs12669315	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,55:30:110:0.500:2	0/1:51,32:31:84:0.386:2	0/1:44,40:30:84:0.476:2	0/1:55,48:31:105:0.466:2	0/1:82,44:30:126:0.349:2	0/1:0,124:31:124:1.00:2	0/1:0,91:31:91:1.00:2	0/1:49,67:31:116:0.578:2
chr7	40314243	rs4637704	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:31,32:31:63:0.508:2	0/1:23,18:32:41:0.439:2	0/1:0,2:32:2:1.00:2	./.	0/1:23,19:32:42:0.452:2	0/1:25,32:32:57:0.561:2	0/1:32,13:31:45:0.289:2	./.	./.	./.	./.
chr7	40899967	rs2010706	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:32:73:1.00:2	0/1:0,55:32:55:1.00:2	0/1:7,6:31:13:0.462:2	0/1:68,43:32:111:0.387:2	0/1:45,50:31:95:0.526:2	0/1:41,49:32:90:0.544:2	./.	0/1:68,49:33:117:0.419:2	0/1:60,32:33:93:0.348:2	0/1:0,58:31:58:1.00:2	./.
chr7	42004062	rs35364414	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,66:31:142:0.465:2	0/1:45,35:31:80:0.438:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	42004600	rs34089404	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,20:30:54:0.370:2	0/1:29,21:31:50:0.420:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	42004651	rs35139358	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,23:32:57:0.404:2	0/1:26,20:32:46:0.435:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	42004664	rs35280470	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,27:31:57:0.482:2	0/1:27,24:32:51:0.471:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	42005333	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,4:31:106:0.038:2	./.	./.	./.	./.	./.	./.
chr7	42005845	rs34245321	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,7:32:16:0.438:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	42018234	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:32:148:0.027:2	./.	./.
chr7	42018336	rs34020684	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,22:32:56:0.393:2	0/1:25,8:31:33:0.242:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	42079741	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:33:192:0.021:2	./.	./.
chr7	42079765	rs35961850	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,74:32:177:0.418:2	0/1:54,39:32:93:0.419:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	42088222	rs846266	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:28:90:1.00:2	0/1:0,49:28:50:1.00:2	0/1:11,11:29:22:0.500:2	0/1:76,70:29:146:0.479:2	0/1:4,76:28:80:0.950:2	./.	0/1:1,106:29:107:0.991:2	0/1:0,138:28:138:1.00:2	./.	0/1:69,39:29:108:0.361:2	0/1:86,71:27:157:0.452:2
chr7	42088232	rs3898405	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,40:30:95:0.421:2	0/1:24,22:30:46:0.478:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	42957223	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:31:165:0.024:2	./.
chr7	42977091	rs631132	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:33:41:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,67:32:67:1.00:2	0/1:32,33:33:65:0.508:2	0/1:0,58:33:58:1.00:2	0/1:40,48:33:88:0.545:2
chr7	43483981	rs61756574	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,61:29:152:0.401:2	./.	./.	./.	0/1:40,29:30:69:0.420:2
chr7	43484310	rs73098706	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,47:32:73:0.644:2	0/1:18,25:32:43:0.581:2	0/1:5,5:32:10:0.500:2	0/1:2,89:31:91:0.978:2	0/1:59,41:31:100:0.410:2	./.	0/1:69,50:31:119:0.420:2	0/1:1,129:32:130:0.992:2	0/1:40,35:30:75:0.467:2	./.	0/1:37,39:30:76:0.513:2
chr7	43506059	rs2304329	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,50:33:51:0.980:2	0/1:1,26:32:27:0.963:2	0/1:6,9:32:15:0.600:2	0/1:0,44:33:44:1.00:2	0/1:31,16:32:47:0.340:2	./.	0/1:1,48:33:49:0.980:2	0/1:0,58:32:58:1.00:2	0/1:46,30:33:76:0.395:2	0/1:48,27:32:75:0.360:2	0/1:36,31:33:67:0.463:2
chr7	43506158	rs2304328	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,21:26:21:1.00:2	0/1:1,12:27:13:0.923:2	./.	0/1:0,21:29:21:1.00:2	0/1:8,4:28:12:0.333:2	./.	0/1:12,11:30:23:0.478:2	0/1:0,36:28:36:1.00:2	0/1:8,17:27:25:0.680:2	0/1:12,6:28:18:0.333:2	./.
chr7	43519337	rs2304327	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:26,24:27:50:0.480:2	0/1:22,4:26:26:0.154:2	./.	./.	./.	./.	0/1:16,16:29:32:0.500:2	./.	./.	0/1:27,23:28:50:0.460:2	./.
chr7	43540887	rs17339479	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,41:33:90:0.456:2	./.	./.	./.	0/1:41,32:32:73:0.438:2
chr7	43591832	rs56111512	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,91:32:194:0.469:2	./.	./.	0/1:0,175:32:175:1.00:2	./.
chr7	43601425	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:33:159:0.025:2	./.	./.	./.	./.
chr7	43647879	rs11555026	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,28:30:63:0.444:2	./.	./.	0/1:13,25:31:38:0.658:2	./.	./.	0/1:31,30:30:61:0.492:2	./.
chr7	43664198	rs10233697	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,21:33:54:0.389:2	./.	./.	0/1:6,9:33:15:0.600:2	./.	./.	0/1:7,16:33:23:0.696:2	./.
chr7	43664280	rs1044141	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,24:28:54:0.444:2	0/1:18,14:30:32:0.438:2	0/1:0,4:32:4:1.00:2	0/1:2,42:31:44:0.955:2	./.	./.	0/1:0,12:31:12:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,21:31:21:1.00:2	0/1:26,32:30:58:0.552:2
chr7	43810764	rs699512	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,43:31:83:0.518:2	0/1:34,18:31:52:0.346:2	0/1:0,11:30:11:1.00:2	0/1:0,73:31:73:1.00:2	./.	./.	0/1:0,51:30:51:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,68:31:68:1.00:2	0/1:0,53:30:54:1.00:2	0/1:58,48:32:106:0.453:2
chr7	43830888	rs1802846	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,14:31:14:1.00:2	./.	./.	./.	./.	0/1:0,87:32:87:1.00:2	./.	./.	0/1:53,45:32:98:0.459:2
chr7	43843423	rs1131372	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	0/1:2,51:30:53:0.962:2	./.	./.	0/1:35,23:31:58:0.397:2
chr7	43846603	rs7738	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:30,23:33:54:0.434:2	0/1:14,18:33:32:0.563:2	./.	0/1:43,42:32:85:0.494:2	./.	./.	0/1:23,19:33:42:0.452:2	./.	0/1:0,50:33:50:1.00:2	0/1:37,31:33:68:0.456:2	./.
chr7	43906513	rs670573	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,17:30:36:0.472:2	./.	./.	./.	./.
chr7	43916491	rs2232109	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,26:30:46:0.565:2	./.	./.
chr7	43916727	rs2232108	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,49:33:50:0.980:2	0/1:0,31:32:31:1.00:2	0/1:0,6:32:6:1.00:2	0/1:42,41:33:83:0.494:2	0/1:1,70:32:71:0.986:2	./.	0/1:64,56:32:120:0.467:2	0/1:2,101:33:103:0.981:2	0/1:49,44:33:93:0.473:2	0/1:47,29:32:76:0.382:2	0/1:47,44:32:91:0.484:2
chr7	43917013	rs2232105	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:32:37:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,12:31:12:1.00:2	0/1:33,22:30:55:0.400:2	0/1:1,90:31:91:0.989:2	./.	0/1:44,19:31:63:0.302:2	0/1:0,86:31:86:1.00:2	0/1:22,38:32:60:0.633:2	0/1:26,10:32:36:0.278:2	0/1:10,22:33:32:0.688:2
chr7	43917274	rs2232103	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,20:29:21:0.952:2	0/1:0,14:29:14:1.00:2	0/1:0,6:28:6:1.00:2	0/1:20,21:29:41:0.512:2	0/1:0,40:27:40:1.00:2	./.	0/1:0,34:27:34:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,44:31:44:1.00:2	0/1:19,17:30:36:0.472:2	0/1:18,19:29:37:0.514:2
chr7	43917623	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:32:114:0.035:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	43966161	rs2595706	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,30:30:63:0.476:2	./.	./.	./.	./.
chr7	43982482	rs2074727	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:86,71:32:158:0.452:2	0/1:46,45:31:91:0.495:2	./.	0/1:101,86:32:187:0.460:2	0/1:2,190:31:192:0.990:2	./.	0/1:122,74:32:196:0.378:2	./.	0/1:113,83:32:196:0.423:2	0/1:82,62:32:144:0.431:2	./.
chr7	44044805	rs144363892	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:33:168:0.024:2	./.	./.	./.	./.	./.
chr7	44046900	rs147853765	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,77:32:191:0.403:2	./.	./.
chr7	44046934	rs200388629	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,9:30:184:0.049:2	0/1:168,16:31:184:0.087:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	44046973	rs144910167	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,6:30:163:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	44046995	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:142,27:26:169:0.160:2	0/1:150,14:24:164:0.085:2	./.	0/1:161,18:26:179:0.101:2	0/1:180,7:25:187:0.037:2	0/1:154,23:25:177:0.130:2	0/1:175,12:25:187:0.064:2	0/1:174,12:25:186:0.065:2	0/1:165,11:26:176:0.063:2	0/1:175,7:25:182:0.038:2	0/1:163,8:27:171:0.047:2
chr7	44047000	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:165,7:30:172:0.041:2	0/1:149,4:32:153:0.026:2	./.	./.	0/1:171,5:30:176:0.028:2	0/1:168,12:30:180:0.067:2	0/1:178,6:31:184:0.033:2	./.	./.	0/1:178,4:32:182:0.022:2	0/1:158,6:28:164:0.037:2
chr7	44047025	rs201367756	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:164,12:33:176:0.068:2	0/1:163,5:31:168:0.030:2	./.	0/1:180,5:28:185:0.027:2	./.	0/1:167,8:33:175:0.046:2	0/1:171,4:34:175:0.023:2	./.	0/1:171,5:29:178:0.028:2	./.	./.
chr7	44047066	rs78424385	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,11:27:23:0.478:2	0/1:101,81:29:182:0.445:2	./.	./.	0/1:81,86:28:167:0.515:2	./.	0/1:111,72:29:183:0.393:2	./.	./.
chr7	44047067	rs149337537	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:32:180:0.022:2	./.	./.	./.	./.	./.
chr7	44047075	rs201803853	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:180,10:31:190:0.053:2	0/1:170,10:28:180:0.056:2	0/1:181,5:32:186:0.027:2	0/1:183,5:33:188:0.027:2	./.	./.	./.
chr7	44047076	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:32:160:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	44047122	rs200198050	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:156,9:28:165:0.055:2	0/1:136,11:30:147:0.075:2	./.	./.	0/1:169,11:30:180:0.061:2	0/1:160,14:30:174:0.080:2	0/1:169,9:31:178:0.051:2	0/1:170,7:31:177:0.040:2	./.	0/1:175,8:29:183:0.044:2	0/1:170,5:31:175:0.029:2
chr7	44099664	rs11552797	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:93,55:29:148:0.372:2	0/1:53,36:29:89:0.404:2	0/1:7,14:30:21:0.667:2	./.	0/1:93,73:30:166:0.440:2	./.	./.	0/1:4,182:30:186:0.978:2	./.	0/1:110,81:30:191:0.424:2	0/1:96,68:30:164:0.415:2
chr7	44121936	rs3218655	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:29:4:1.00:2	0/1:0,2:30:2:1.00:2	./.	./.	0/1:2,8:28:10:0.800:2	./.	./.	0/1:0,7:27:7:1.00:2	./.	./.	./.
chr7	44147485	rs2537188	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,17:27:34:0.500:2	0/1:9,12:31:21:0.571:2	0/1:0,4:29:4:1.00:2	0/1:0,27:29:27:1.00:2	0/1:14,24:29:38:0.632:2	./.	./.	./.	0/1:11,19:29:30:0.633:2	./.	0/1:16,11:29:27:0.407:2
chr7	44148553	rs2595701	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,35:29:68:0.515:2	0/1:26,26:29:52:0.500:2	0/1:0,12:30:12:1.00:2	0/1:1,91:30:92:0.989:2	0/1:66,58:29:124:0.468:2	0/1:41,50:30:91:0.549:2	0/1:1,108:30:109:0.991:2	0/1:1,100:30:101:0.990:2	0/1:72,34:31:106:0.321:2	0/1:0,88:30:88:1.00:2	0/1:34,51:30:86:0.600:2
chr7	44148696	rs117188338	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,14:30:28:0.500:2	./.
chr7	44149688	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:30:42:0.095:2	./.
chr7	44153780	rs13928	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,23:32:44:0.523:2	0/1:28,29:32:57:0.509:2	0/1:3,48:32:52:0.941:2	0/1:19,30:32:49:0.612:2	0/1:12,26:33:38:0.684:2	0/1:11,17:31:28:0.607:2
chr7	44161487	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,11:15:146:0.075:2	./.	./.	./.	0/1:113,18:12:131:0.137:2	0/1:97,14:12:112:0.126:2
chr7	44180652	rs4440539	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,33:30:61:0.541:2	./.	./.	0/1:18,16:31:34:0.471:2	./.
chr7	44259706	rs1065359	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,19:31:19:1.00:2	0/1:0,8:31:8:1.00:2	./.	0/1:0,6:32:6:1.00:2	0/1:0,10:30:10:1.00:2	0/1:4,7:31:11:0.636:2	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.
chr7	44259871	rs1127065	C	G,T	.	PASS	AC=1,7;AF=0.042,0.292;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0/2:31:137:0.993:2	0/2:31:63:0.984:2	0/2:29:24:0.417:2	0/2:31:170:0.506:2	0/2:31:146:0.979:2	0/2:31:177:0.458:2	./.	./.	./.	0/2:31:179:0.436:2	0/1:32:154:0.434:2
chr7	44274007	rs192939758	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,7:31:16:0.438:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	44282868	rs11542228	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,48:29:118:0.407:2	./.	0/1:59,34:29:93:0.366:2	0/1:81,59:29:140:0.421:2	0/1:2,123:28:125:0.984:2	./.	0/1:44,33:29:77:0.429:2	0/1:48,25:29:73:0.342:2
chr7	44282877	rs11542227	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,30:28:89:0.337:2	0/1:77,61:29:138:0.442:2	0/1:2,130:28:132:0.985:2	./.	0/1:48,32:29:80:0.400:2	0/1:49,25:29:74:0.338:2
chr7	44282928	rs17172630	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:118,4:34:122:0.033:2	0/1:51,29:32:81:0.363:2	0/1:82,38:31:121:0.317:2	./.	./.	./.	0/1:35,22:32:57:0.386:2
chr7	44431978	rs149687229	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,72:31:167:0.431:2	0/1:59,63:32:122:0.516:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	44444122	rs11550029	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	44530193	rs307007	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	44553238	rs217434	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:33:5:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	44555406	rs10264715	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,26:32:53:0.491:2	./.
chr7	44555699	rs52815063	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:49,32:31:81:0.395:2	0/1:23,16:30:39:0.410:2	./.	./.	0/1:107,74:30:181:0.409:2	./.	./.	./.	./.	./.	./.
chr7	44575999	rs200133680	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:32:13:0.462:2	./.	./.	./.	./.	./.	./.	./.
chr7	44579029	rs185121858	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:131,17:13:148:0.115:2	./.	0/1:129,21:15:151:0.140:2	0/1:149,21:13:170:0.124:2	0/1:144,18:12:162:0.111:2	0/1:143,24:11:168:0.144:2	./.	0/1:99,21:13:120:0.175:2
chr7	44579180	rs2072183	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,58:30:124:0.468:2	./.	./.	./.	./.	0/1:35,39:31:74:0.527:2	./.
chr7	44579548	rs146576987	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,51:32:111:0.459:2	./.	./.
chr7	44579720	rs202170125	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:32:129:0.031:2	./.	./.	./.	./.	./.
chr7	44579738	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,52:27:116:0.452:2	./.	./.	./.	./.
chr7	44580876	rs41279633	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,7:30:21:0.333:2	./.
chr7	44605617	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:32:148:0.027:2	./.	./.	./.
chr7	44606098	rs6656	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,52:29:53:0.981:2	0/1:46,47:30:93:0.505:2	0/1:47,57:30:105:0.548:2	./.	0/1:0,106:30:106:1.00:2	0/1:32,25:31:57:0.439:2	0/1:0,53:31:53:1.00:2	0/1:36,18:28:54:0.333:2
chr7	44608718	rs2289051	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,8:29:22:0.364:2	./.
chr7	44612229	rs2289057	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,31:32:70:0.443:2	./.	./.	./.	./.	./.	./.
chr7	44613423	rs78612841	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,21:31:42:0.500:2	./.
chr7	44620836	rs8580	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,62:31:62:1.00:2	0/1:27,24:30:51:0.471:2	0/1:34,29:31:63:0.460:2	./.	0/1:0,81:32:81:1.00:2	0/1:40,39:32:79:0.494:2	0/1:0,51:31:51:1.00:2	0/1:32,49:31:81:0.605:2
chr7	44685048	rs11557280	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,14:31:42:0.333:2	./.
chr7	44685099	rs41280648	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,37:30:69:0.536:2	./.	0/1:33,18:31:51:0.353:2	./.	0/1:1,77:31:78:0.987:2	./.	./.	./.
chr7	44687291	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	44733557	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:32:192:0.021:2	./.	./.	./.
chr7	44735681	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:30:68:0.060:2	./.	./.	./.
chr7	44797614	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,4:31:50:0.080:2	./.	./.	./.	./.	./.	./.	./.
chr7	44800176	rs3735478	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:50,36:31:87:0.419:2	0/1:25,17:30:42:0.405:2	./.	./.	0/1:77,47:29:124:0.379:2	0/1:69,66:30:135:0.489:2	0/1:1,107:31:108:0.991:2	./.	0/1:64,45:31:109:0.413:2	./.	./.
chr7	44801141	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:31:111:0.036:2	./.	./.	./.	./.
chr7	44805814	rs145522270	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,11:31:29:0.379:2	./.
chr7	44836314	rs6850	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:23,26:29:49:0.531:2	0/1:29,20:31:49:0.408:2	0/1:9,10:32:19:0.526:2	./.	./.	./.	./.	./.	./.	0/1:78,34:30:112:0.304:2	./.
chr7	44874113	rs1802437	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,6:27:60:0.100:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,5:26:128:0.039:2
chr7	44874131	rs114398265	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,3:31:17:0.176:2	0/1:70,4:32:74:0.054:2	0/1:79,5:32:84:0.060:2	./.	0/1:69,4:32:73:0.055:2	./.	0/1:90,8:33:98:0.082:2	./.	0/1:95,4:32:99:0.040:2
chr7	44924627	rs6966024	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	0/1:0,2:34:2:1.00:2
chr7	45004063	rs7792760	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:30:39:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,73:29:74:1.00:2	0/1:0,69:30:69:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,61:30:61:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,64:30:65:1.00:2	0/1:0,52:30:52:1.00:2
chr7	45005795	rs2269969	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,24:32:40:0.600:2	0/1:6,11:31:17:0.647:2	./.	./.	./.	0/1:0,45:30:45:1.00:2	./.	0/1:0,45:31:45:1.00:2	./.	0/1:21,17:31:38:0.447:2	./.
chr7	45009325	rs3735484	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,53:31:98:0.541:2	./.	./.	0/1:45,43:30:88:0.489:2	./.	0/1:45,43:31:88:0.489:2	./.	0/1:0,50:30:50:1.00:2
chr7	45009341	rs3735485	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:27:74:1.00:2	0/1:0,45:28:45:1.00:2	0/1:0,12:28:12:1.00:2	0/1:0,108:28:108:1.00:2	0/1:0,139:27:139:1.00:2	0/1:0,133:28:133:1.00:2	0/1:0,98:28:98:1.00:2	0/1:0,141:28:142:1.00:2	0/1:0,98:28:98:1.00:2	0/1:0,81:28:81:1.00:2	0/1:0,60:28:60:1.00:2
chr7	45009723	rs11555636	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,24:31:47:0.511:2	0/1:14,13:31:27:0.481:2	./.	0/1:51,44:30:95:0.463:2	0/1:0,93:31:93:1.00:2	./.	0/1:0,86:32:86:1.00:2	./.	0/1:0,51:32:51:1.00:2	0/1:39,32:32:72:0.451:2	0/1:0,43:32:43:1.00:2
chr7	45015107	rs61738857	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:68,46:30:114:0.404:2	0/1:33,26:31:59:0.441:2	0/1:9,9:29:18:0.500:2	./.	./.	0/1:0,154:29:154:1.00:2	./.	0/1:2,125:30:127:0.984:2	./.	0/1:67,66:31:133:0.496:2	0/1:82,79:30:161:0.491:2
chr7	45016621	rs61739531	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,31:32:54:0.574:2	0/1:21,20:32:41:0.488:2	./.	./.	./.	0/1:1,78:31:79:0.987:2	./.	0/1:6,98:32:104:0.942:2	./.	0/1:37,32:32:69:0.464:2	0/1:44,32:32:76:0.421:2
chr7	45112353	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:32:100:0.040:2	./.	./.	./.	./.	./.
chr7	45113170	rs2289367	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:24,22:32:46:0.478:2	0/1:12,5:32:17:0.294:2	0/1:5,7:31:12:0.583:2	./.	0/1:0,59:32:59:1.00:2	./.	0/1:39,27:32:66:0.409:2	./.	0/1:27,39:34:66:0.591:2	0/1:21,13:32:34:0.382:2	./.
chr7	45122464	rs10243185	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,4:33:12:0.333:2	0/1:5,3:32:8:0.375:2	./.	0/1:11,10:30:21:0.476:2	0/1:0,12:31:12:1.00:2	./.	0/1:14,6:32:20:0.300:2	./.	0/1:6,7:32:13:0.538:2	0/1:5,6:28:11:0.545:2	./.
chr7	45122723	rs61740895	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:23,33:31:56:0.589:2	0/1:31,15:31:46:0.326:2	./.	./.	0/1:1,70:31:71:0.986:2	./.	0/1:39,37:31:76:0.487:2	./.	0/1:28,20:32:48:0.417:2	0/1:35,27:31:62:0.435:2	./.
chr7	45123090	rs10276748	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:14,7:32:21:0.333:2	0/1:8,4:30:12:0.333:2	./.	./.	0/1:5,11:32:16:0.688:2	./.	0/1:14,12:30:26:0.462:2	./.	0/1:10,7:33:17:0.412:2	0/1:9,8:32:17:0.471:2	./.
chr7	45123210	rs112661489	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.
chr7	45123257	rs10276909	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,3:26:5:0.600:2	./.	./.	./.	./.	./.	./.
chr7	45123377	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,5:28:7:0.714:2	./.	0/1:8,3:31:11:0.273:2	./.	./.	./.	./.
chr7	45123565	rs200258168	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,5:31:20:0.250:2	./.	0/1:10,4:30:14:0.286:2	./.	./.	./.	./.
chr7	45123660	rs202009438	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,7:30:24:0.292:2	./.	./.	./.	./.	./.	./.
chr7	45123685	rs199774238	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,6:29:24:0.250:2	./.	0/1:11,5:31:16:0.313:2	./.	./.	./.	./.
chr7	45123698	rs200342703	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,4:32:22:0.182:2	./.	./.	./.	./.	./.	./.
chr7	45123737	rs200226621	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,4:28:20:0.200:2	./.	./.	./.	./.	./.	./.
chr7	45123818	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.	./.	./.	./.	./.	./.
chr7	45123823	rs7809895	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:1,2:33:3:0.667:2	./.	0/1:4,3:31:7:0.429:2	0/1:0,9:28:9:1.00:2	./.	./.	./.	0/1:0,3:29:3:1.00:2	./.	./.
chr7	45123857	rs7790844	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:34:8:0.375:2	./.	./.	./.	./.	./.	./.	./.
chr7	45123859	rs72497819	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,3:29:12:0.250:2	./.	./.	./.	./.	./.	./.
chr7	45123906	rs61740887	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:26:10:0.400:2	./.	./.	0/1:9,8:31:17:0.471:2	./.	./.	./.	./.	0/1:4,5:32:9:0.556:2	./.
chr7	45123925	rs377425677	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,7:28:15:0.467:2	./.	./.	0/1:6,11:28:18:0.647:2	./.	./.	./.	./.	0/1:6,5:27:11:0.455:2	./.
chr7	45123937	rs112035890	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:16,6:30:22:0.273:2	0/1:11,7:30:18:0.389:2	./.	./.	0/1:3,17:30:20:0.850:2	./.	0/1:11,3:33:14:0.214:2	./.	0/1:12,6:31:18:0.333:2	0/1:9,6:31:15:0.400:2	./.
chr7	45124008	rs7777835	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,81:33:82:0.988:2	0/1:0,42:32:42:1.00:2	0/1:0,6:33:6:1.00:2	0/1:26,36:33:62:0.581:2	0/1:0,69:32:69:1.00:2	0/1:0,83:31:83:1.00:2	0/1:26,34:32:60:0.567:2	0/1:2,80:32:82:0.976:2	0/1:43,25:33:68:0.368:2	0/1:0,65:33:65:1.00:2	0/1:48,45:33:93:0.484:2
chr7	45124286	rs3735494	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:37,33:30:70:0.471:2	0/1:30,15:30:45:0.333:2	./.	./.	0/1:1,49:28:50:0.980:2	./.	0/1:28,25:29:54:0.472:2	./.	0/1:46,26:28:72:0.361:2	0/1:44,19:30:63:0.302:2	./.
chr7	45124350	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:113,4:32:117:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr7	45124465	rs3735495	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:32,34:31:66:0.515:2	0/1:21,18:32:39:0.462:2	0/1:9,8:32:17:0.471:2	./.	0/1:0,61:31:61:1.00:2	./.	0/1:42,34:31:76:0.447:2	./.	0/1:43,44:32:87:0.506:2	0/1:35,35:31:70:0.500:2	./.
chr7	45142971	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,5:30:161:0.031:2	./.	./.	./.
chr7	45148667	rs2304693	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:54,52:33:106:0.491:2	0/1:31,32:33:63:0.508:2	0/1:6,8:33:14:0.571:2	./.	0/1:3,108:32:111:0.973:2	./.	0/1:59,77:32:136:0.566:2	./.	0/1:81,83:33:165:0.506:2	0/1:66,41:33:107:0.383:2	./.
chr7	45148773	rs2304694	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:30,23:30:53:0.434:2	0/1:10,13:32:23:0.565:2	0/1:3,4:31:7:0.571:2	./.	0/1:0,66:31:66:1.00:2	./.	0/1:25,36:31:61:0.590:2	./.	0/1:50,31:32:81:0.383:2	0/1:28,22:31:50:0.440:2	./.
chr7	45222817	rs145139513	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,8:30:21:0.381:2	0/1:5,3:32:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	45753324	rs2293106	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,40:31:81:0.494:2	./.	0/1:51,39:32:90:0.433:2	./.	0/1:1,88:32:89:0.989:2	0/1:47,46:31:93:0.495:2	./.
chr7	45932600	rs4988515	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,17:31:58:0.293:2	./.	0/1:36,23:29:59:0.390:2	./.	./.	./.	./.
chr7	45932669	rs4619	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,7:32:21:0.333:2	./.	0/1:0,19:31:19:1.00:2	0/1:0,9:32:9:1.00:2	./.	0/1:0,31:32:31:1.00:2	0/1:7,4:26:11:0.364:2	./.
chr7	47323456	rs3750164	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,15:30:24:0.625:2	0/1:3,8:29:11:0.727:2	0/1:0,6:31:6:1.00:2	0/1:9,16:31:25:0.640:2	0/1:0,19:30:19:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,33:30:33:1.00:2	0/1:13,16:29:29:0.552:2	0/1:18,21:31:39:0.538:2	0/1:0,18:30:18:1.00:2	0/1:8,19:29:27:0.704:2
chr7	47343083	rs3807589	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,16:30:49:0.327:2	./.	./.	./.	0/1:17,23:32:40:0.575:2	./.	./.
chr7	47344450	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:33:135:0.030:2	./.	./.
chr7	47408029	rs2255744	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:26:31:1.00:2	0/1:0,13:27:13:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,45:26:45:1.00:2	0/1:0,46:26:46:1.00:2	0/1:0,43:27:43:1.00:2	0/1:1,48:27:49:0.980:2	0/1:1,46:27:47:0.979:2	0/1:14,19:28:33:0.576:2	./.	0/1:2,16:25:18:0.889:2
chr7	47408712	rs200890760	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,6:18:37:0.162:2	./.	./.	0/1:38,9:17:47:0.191:2	0/1:52,10:13:62:0.161:2	0/1:60,14:14:74:0.189:2	0/1:57,11:16:69:0.162:2	./.	./.	./.	0/1:27,8:20:35:0.229:2
chr7	47408974	rs1534136	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:33:89:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,94:33:94:1.00:2	0/1:2,52:31:54:0.963:2	0/1:0,65:32:65:1.00:2	0/1:1,88:32:89:0.989:2	0/1:2,98:32:100:0.980:2	0/1:59,56:33:115:0.487:2	./.	0/1:0,85:32:85:1.00:2
chr7	47436408	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,4:31:138:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr7	47436497	rs17544028	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,47:32:118:0.398:2	./.	./.	0/1:54,43:33:97:0.443:2	./.	0/1:39,36:32:75:0.480:2
chr7	47479206	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,5:31:101:0.050:2	./.
chr7	47694938	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,10:31:114:0.088:2	./.	./.	./.	./.
chr7	47698685	rs12531737	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,29:32:75:0.387:2	0/1:25,24:32:49:0.490:2	./.	0/1:55,60:33:115:0.522:2	0/1:75,47:32:122:0.385:2	0/1:64,62:32:126:0.492:2	./.	./.	./.	./.	./.
chr7	47814742	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,29:31:64:0.453:2	0/1:19,12:31:31:0.387:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	47840310	rs146576726	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,31:32:60:0.517:2	./.	./.	./.	./.	./.
chr7	47840387	rs13231277	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,21:31:53:0.396:2	./.	0/1:25,25:31:50:0.500:2	./.	./.	./.	./.	./.
chr7	47851623	rs73692834	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:52,36:32:88:0.409:2	0/1:19,22:33:41:0.537:2	0/1:14,4:32:18:0.222:2	./.	./.	./.	0/1:58,70:32:128:0.547:2	./.	./.	0/1:43,33:32:76:0.434:2	0/1:54,37:30:91:0.407:2
chr7	47852837	rs2290386	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:29,26:33:55:0.473:2	0/1:15,15:32:30:0.500:2	./.	./.	./.	./.	0/1:24,25:31:49:0.510:2	./.	./.	0/1:37,18:32:55:0.327:2	0/1:34,32:33:66:0.485:2
chr7	47854956	rs17545564	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:22,10:31:32:0.313:2	0/1:13,12:31:25:0.480:2	./.	./.	./.	./.	0/1:14,18:31:32:0.563:2	./.	./.	0/1:15,5:32:20:0.250:2	0/1:21,14:31:35:0.400:2
chr7	47866965	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:35:83:0.048:2	./.	./.
chr7	47869038	rs7788583	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,34:31:68:0.500:2	./.	0/1:17,14:30:31:0.452:2	./.	./.	./.	./.	0/1:33,36:31:69:0.522:2
chr7	47872845	rs921634	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:30:46:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,57:29:57:1.00:2	0/1:46,35:29:81:0.432:2	0/1:37,37:30:74:0.500:2	0/1:0,90:30:90:1.00:2	0/1:38,34:30:72:0.472:2	0/1:0,56:30:56:1.00:2	0/1:0,39:30:39:1.00:2	0/1:39,23:30:62:0.371:2
chr7	47874630	rs66755489	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,26:33:52:0.500:2	./.	0/1:24,34:33:58:0.586:2	./.	./.	./.	./.	./.
chr7	47879049	rs76100363	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:37,30:32:67:0.448:2	0/1:23,26:31:50:0.531:2	0/1:7,3:32:10:0.300:2	./.	./.	./.	0/1:26,27:32:53:0.509:2	./.	./.	0/1:30,18:32:48:0.375:2	0/1:21,23:33:44:0.523:2
chr7	47913560	rs78833972	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,34:33:102:0.333:2	./.	./.	./.	./.	./.
chr7	47913579	rs1470859	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,31:32:75:0.413:2	0/1:24,26:33:50:0.520:2	./.	0/1:2,112:30:114:0.982:2	0/1:93,97:29:190:0.511:2	0/1:1,77:30:78:0.987:2	0/1:0,111:32:111:1.00:2	0/1:1,151:30:152:0.993:2	0/1:60,38:31:98:0.388:2	0/1:0,83:30:83:1.00:2	0/1:70,53:29:124:0.431:2
chr7	47913580	rs73105162	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,31:31:75:0.413:2	0/1:24,26:31:50:0.520:2	./.	./.	./.	0/1:61,19:30:80:0.238:2	0/1:1,110:30:111:0.991:2	./.	./.	0/1:44,39:30:83:0.470:2	./.
chr7	47920345	rs62447081	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:44,33:31:77:0.429:2	0/1:35,30:32:65:0.462:2	0/1:9,6:33:15:0.400:2	./.	./.	0/1:70,52:31:122:0.426:2	0/1:1,109:32:110:0.991:2	./.	./.	0/1:29,39:32:68:0.574:2	./.
chr7	47921570	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:32:76:0.053:2	./.	./.	./.	./.
chr7	47921682	rs10951936	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,4:32:8:0.500:2	0/1:2,81:31:83:0.976:2	0/1:43,22:31:65:0.338:2	0/1:47,37:31:84:0.440:2	0/1:48,26:32:74:0.351:2	0/1:45,39:32:84:0.464:2	0/1:48,37:32:85:0.435:2	./.	0/1:55,50:31:105:0.476:2
chr7	47925331	rs10274334	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:20,22:33:42:0.524:2	0/1:5,7:31:12:0.583:2	./.	0/1:25,25:33:50:0.500:2	./.	0/1:0,40:32:40:1.00:2	0/1:36,17:33:53:0.321:2	0/1:33,28:33:61:0.459:2	0/1:26,31:33:57:0.544:2	./.	0/1:21,7:32:28:0.250:2
chr7	47968927	rs2686817	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,30:31:67:0.448:2	0/1:30,15:32:45:0.333:2	0/1:0,6:31:6:1.00:2	0/1:42,41:30:83:0.494:2	./.	0/1:62,27:30:89:0.303:2	./.	0/1:47,54:31:101:0.535:2	0/1:48,42:31:90:0.467:2	0/1:39,19:30:58:0.328:2	0/1:61,41:30:102:0.402:2
chr7	47971575	rs885337	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,11:30:12:0.917:2	0/1:5,10:28:15:0.667:2	0/1:0,7:29:7:1.00:2	0/1:13,12:26:25:0.480:2	./.	0/1:4,3:27:7:0.429:2	./.	0/1:17,13:30:30:0.433:2	0/1:4,15:29:19:0.789:2	0/1:7,5:32:12:0.417:2	0/1:0,13:28:13:1.00:2
chr7	48004962	rs1056663	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,28:31:45:0.622:2	0/1:12,10:31:22:0.455:2	0/1:0,8:32:8:1.00:2	0/1:32,51:31:83:0.614:2	./.	0/1:42,42:30:84:0.500:2	./.	0/1:54,34:31:88:0.386:2	0/1:50,41:31:91:0.451:2	0/1:45,25:31:70:0.357:2	0/1:0,77:31:77:1.00:2
chr7	48081095	rs10951942	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,21:31:21:1.00:2	0/1:0,9:32:9:1.00:2	./.	0/1:6,4:32:10:0.400:2	0/1:0,19:32:19:1.00:2	0/1:6,8:31:14:0.571:2	./.	0/1:21,3:30:24:0.125:2	0/1:13,7:34:20:0.350:2	0/1:14,19:32:33:0.576:2	./.
chr7	48086077	rs2708912	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:33:47:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,64:32:64:1.00:2	0/1:1,59:32:60:0.983:2	0/1:0,55:32:55:1.00:2	0/1:0,74:33:74:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,67:33:67:1.00:2
chr7	48086161	rs10233232	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:29:49:1.00:2	0/1:0,28:28:28:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,53:29:53:1.00:2	0/1:1,53:29:54:0.981:2	0/1:1,59:28:60:0.983:2	0/1:0,36:30:36:1.00:2	0/1:0,60:28:60:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,53:28:53:1.00:2	0/1:1,79:28:80:0.988:2
chr7	48089542	rs2686788	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,73:32:73:1.00:2	0/1:2,63:32:65:0.969:2	0/1:0,76:32:76:1.00:2	0/1:1,61:32:62:0.984:2	0/1:1,75:32:77:0.987:2	0/1:0,65:32:65:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,60:31:60:1.00:2
chr7	48089571	rs2708890	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:31:53:1.00:2	0/1:0,39:31:40:1.00:2	0/1:0,15:31:15:1.00:2	0/1:3,79:31:82:0.963:2	0/1:0,71:31:72:1.00:2	0/1:0,77:31:77:1.00:2	0/1:1,67:31:68:0.985:2	0/1:0,84:31:84:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,70:31:70:1.00:2
chr7	48092486	rs2686791	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:29:25:1.00:2	0/1:0,19:27:19:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,38:28:38:1.00:2	0/1:0,49:28:49:1.00:2	0/1:0,54:29:54:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,46:29:46:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,32:29:32:1.00:2	0/1:0,50:28:50:1.00:2
chr7	48094229	rs7803787	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,22:32:49:0.449:2	./.	./.	./.
chr7	48237849	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,57:32:129:0.442:2	./.	./.	./.	./.	./.
chr7	48260869	rs10252745	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,7:32:17:0.412:2	0/1:13,15:31:28:0.536:2	0/1:36,16:33:52:0.308:2	0/1:12,22:32:34:0.647:2	0/1:47,43:33:90:0.478:2
chr7	48273651	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:32:124:0.032:2	./.	./.	./.
chr7	48285485	rs1880738	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:31:11:0.636:2	./.	0/1:54,47:32:101:0.465:2	0/1:55,68:32:123:0.553:2	0/1:97,7:32:104:0.067:2	./.	./.	0/1:52,43:33:95:0.453:2	0/1:0,126:33:126:1.00:2
chr7	48287840	rs2361519	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:28,23:32:51:0.451:2	0/1:14,15:32:29:0.517:2	./.	0/1:35,12:31:47:0.255:2	./.	./.	./.	./.	./.	./.	./.
chr7	48288843	rs184499656	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,27:33:65:0.415:2	./.	./.	./.	./.	./.	./.	./.
chr7	48311442	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:32:72:0.056:2	./.
chr7	48311563	rs17712293	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:27,20:33:47:0.426:2	0/1:16,10:31:26:0.385:2	./.	0/1:29,21:32:50:0.420:2	./.	./.	./.	./.	./.	./.	./.
chr7	48311658	rs17547816	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,22:32:30:0.733:2
chr7	48311924	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:31:115:0.035:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	48312084	rs78575608	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,64:32:115:0.557:2	./.	./.	./.	./.	./.
chr7	48312434	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:28:66:0.061:2	./.	./.	./.	./.	./.
chr7	48312674	rs1358066	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,20:28:50:0.400:2	0/1:1,27:28:28:0.964:2	0/1:28,16:30:44:0.364:2	./.	0/1:22,15:29:37:0.405:2	./.	0/1:25,25:31:50:0.500:2	0/1:0,53:31:53:1.00:2
chr7	48313510	rs17547830	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,27:31:61:0.443:2	0/1:15,8:29:23:0.348:2	./.	./.	./.	0/1:25,32:29:57:0.561:2	0/1:1,35:30:36:0.972:2	0/1:34,32:31:66:0.485:2	0/1:4,42:30:46:0.913:2	0/1:31,16:30:47:0.340:2	./.
chr7	48313757	rs77190804	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,32:32:65:0.492:2	0/1:27,9:32:36:0.250:2	./.	./.	0/1:29,25:32:54:0.463:2	./.	./.	./.
chr7	48313881	rs17712299	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,12:33:19:0.632:2	0/1:11,8:30:19:0.421:2	./.	./.	0/1:22,9:33:31:0.290:2	./.	./.	./.
chr7	48313949	rs6583483	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,7:32:17:0.412:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	48314279	rs6955212	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:43,37:33:80:0.463:2	0/1:31,31:33:62:0.500:2	./.	0/1:42,39:33:81:0.481:2	./.	./.	./.	./.	./.	./.	./.
chr7	48314798	rs13233225	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:32,34:32:66:0.515:2	0/1:24,16:32:40:0.400:2	0/1:2,8:31:10:0.800:2	./.	./.	0/1:46,22:31:68:0.324:2	0/1:2,57:31:59:0.966:2	0/1:35,45:30:81:0.563:2	0/1:0,66:32:66:1.00:2	0/1:44,29:32:73:0.397:2	./.
chr7	48315796	rs1880736	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,7:30:16:0.438:2	0/1:10,9:32:19:0.474:2	./.	0/1:0,20:32:20:1.00:2	0/1:0,18:30:18:1.00:2	0/1:9,10:29:19:0.526:2	./.	0/1:5,6:32:11:0.545:2	./.	0/1:4,11:31:15:0.733:2	0/1:0,24:33:24:1.00:2
chr7	48315930	rs74859514	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,24:31:52:0.462:2	./.	./.	0/1:32,16:31:48:0.333:2	./.	./.
chr7	48317708	rs78334925	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,21:32:34:0.618:2	0/1:10,6:30:16:0.375:2	./.	./.	0/1:11,15:32:26:0.577:2	./.	./.	./.
chr7	48318785	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,7:31:10:0.700:2	./.	./.	./.	./.	./.
chr7	48318811	rs2222648	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,4:32:8:0.500:2	0/1:4,3:31:7:0.429:2	./.	0/1:0,5:31:5:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,7:30:7:1.00:2	./.	0/1:3,3:31:6:0.500:2	./.	0/1:4,6:32:10:0.600:2	0/1:0,8:33:8:1.00:2
chr7	48319362	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,23:32:50:0.460:2	./.
chr7	48336844	rs6583546	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,57:33:92:0.620:2	0/1:28,25:32:53:0.472:2	0/1:4,5:32:9:0.556:2	0/1:0,98:32:98:1.00:2	0/1:0,62:32:62:1.00:2	0/1:41,58:32:99:0.586:2	./.	0/1:45,53:32:98:0.541:2	./.	0/1:45,61:32:106:0.575:2	0/1:0,126:33:126:1.00:2
chr7	48349647	rs3931814	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,62:30:147:0.422:2	./.	./.	./.	0/1:50,71:31:121:0.587:2	0/1:86,63:31:149:0.423:2
chr7	48378029	rs183358970	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,53:33:120:0.442:2	./.	./.
chr7	48416169	rs183759060	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,15:30:124:0.121:2	./.	./.	./.	./.	./.	./.	./.
chr7	48428715	rs17132289	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,30:32:52:0.577:2	0/1:34,25:32:59:0.424:2
chr7	48450157	rs17548783	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,70:30:71:0.986:2	0/1:0,36:30:36:1.00:2	0/1:5,5:30:10:0.500:2	0/1:1,116:30:117:0.991:2	./.	./.	0/1:98,79:31:177:0.446:2	0/1:84,62:29:146:0.425:2	./.	0/1:1,91:30:92:0.989:2	0/1:0,79:30:79:1.00:2
chr7	48506566	rs4917152	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,34:29:76:0.447:2	./.	./.
chr7	48506642	rs4917153	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,29:31:65:0.446:2	./.	./.
chr7	48545976	rs6583448	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,112:30:112:1.00:2	0/1:0,60:29:60:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,125:30:125:1.00:2	0/1:0,126:30:126:1.00:2	0/1:0,129:30:129:1.00:2	0/1:0,154:30:154:1.00:2	0/1:0,153:30:153:1.00:2	0/1:1,129:31:130:0.992:2	0/1:0,121:30:121:1.00:2	0/1:5,96:30:101:0.950:2
chr7	49842377	rs79731913	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,66:29:108:0.611:2
chr7	50097697	rs76027725	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,34:29:58:0.586:2	./.	./.	0/1:20,19:30:39:0.487:2	./.	./.	./.	./.
chr7	50143938	rs17133685	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,60:32:142:0.423:2	./.	./.	0/1:89,62:32:151:0.411:2	./.	./.	./.	./.
chr7	50173777	rs998928	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,9:33:13:0.692:2	0/1:6,12:33:18:0.667:2	0/1:0,5:33:5:1.00:2	0/1:17,7:32:24:0.292:2	./.	0/1:8,12:34:20:0.600:2	0/1:9,9:33:18:0.500:2	./.	0/1:10,11:33:21:0.524:2	0/1:0,8:34:8:1.00:2	0/1:21,16:31:38:0.432:2
chr7	50175681	rs12672941	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,37:32:81:0.457:2	0/1:29,19:32:48:0.396:2	0/1:0,7:32:7:1.00:2	0/1:37,35:32:72:0.486:2	./.	0/1:39,24:30:63:0.381:2	0/1:28,19:32:47:0.404:2	./.	0/1:53,43:32:96:0.448:2	0/1:1,65:32:66:0.985:2	0/1:55,53:32:108:0.491:2
chr7	50180972	rs1456908	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,34:30:80:0.425:2	0/1:26,28:30:54:0.519:2	./.	0/1:62,45:30:107:0.421:2	0/1:0,77:30:77:1.00:2	0/1:0,90:30:90:1.00:2	0/1:66,25:31:91:0.275:2	0/1:100,68:31:168:0.405:2	./.	./.	0/1:77,49:31:126:0.389:2
chr7	50455095	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,16:15:176:0.091:2
chr7	50467767	rs61731355	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:5,17:27:22:0.773:2	0/1:2,3:30:5:0.600:2	0/1:2,4:30:6:0.667:2	./.	./.	./.	./.	./.	./.	0/1:2,11:29:13:0.846:2	./.
chr7	50513753	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:30:36:0.111:2	./.	./.	./.	./.
chr7	50514577	rs10235371	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:27,28:32:55:0.509:2	0/1:12,16:32:28:0.571:2	./.	./.	./.	./.	./.	./.	./.	0/1:38,25:31:63:0.397:2	./.
chr7	50514904	rs62445870	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,31:33:79:0.392:2	0/1:24,37:32:61:0.607:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	50544314	rs4490786	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:9,15:30:25:0.625:2	0/1:6,3:32:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	0/1:12,10:32:22:0.455:2	./.
chr7	50597019	rs200657003	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,35:32:78:0.449:2	./.	./.	./.	./.
chr7	50611735	rs6264	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,148:29:148:1.00:2	0/1:0,98:29:98:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,181:29:182:1.00:2	0/1:0,183:29:183:1.00:2	0/1:0,175:28:175:1.00:2	0/1:0,190:30:190:1.00:2	0/1:0,188:29:188:1.00:2	0/1:0,181:30:181:1.00:2	0/1:0,192:29:192:1.00:2	0/1:0,183:29:183:1.00:2
chr7	50673029	rs4947710	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:31:18:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,3:31:3:1.00:2	0/1:1,33:31:34:0.971:2	0/1:1,26:31:27:0.963:2	0/1:0,20:29:20:1.00:2	0/1:1,11:30:12:0.917:2	0/1:0,25:31:25:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,24:31:24:1.00:2
chr7	50742180	rs1800504	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,13:32:38:0.342:2	0/1:11,8:33:19:0.421:2	./.	0/1:0,24:30:24:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,30:30:30:1.00:2	0/1:16,17:31:33:0.515:2	0/1:0,32:31:32:1.00:2	0/1:11,8:32:19:0.421:2	0/1:14,7:32:21:0.333:2	0/1:0,17:29:17:1.00:2
chr7	51093013	rs2240087	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:31:19:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,47:31:48:1.00:2	0/1:0,34:30:34:1.00:2
chr7	51094269	rs61737954	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,50:27:109:0.459:2	./.	./.	./.	./.	./.	./.	./.
chr7	51096036	rs2240089	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:114,67:33:181:0.370:2	./.	0/1:95,94:33:189:0.497:2	./.	0/1:89,83:33:172:0.483:2	0/1:112,66:33:178:0.371:2	./.
chr7	51096147	rs61739182	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:94,67:29:161:0.416:2	0/1:63,41:28:104:0.394:2	./.	./.	./.	./.	./.	0/1:106,89:28:195:0.456:2	0/1:89,102:30:191:0.534:2	./.	./.
chr7	51096974	rs2240090	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:77,70:31:147:0.476:2	0/1:42,47:31:89:0.528:2	0/1:0,22:31:22:1.00:2	0/1:80,103:31:183:0.563:2	./.	0/1:0,149:31:149:1.00:2	0/1:110,75:31:185:0.405:2	./.	0/1:94,82:33:176:0.466:2	0/1:0,179:32:179:1.00:2	0/1:1,128:32:129:0.992:2
chr7	51097063	rs10230120	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,101:31:102:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,112:31:112:1.00:2	0/1:0,93:31:94:1.00:2	0/1:0,121:32:121:1.00:2	0/1:0,118:31:118:1.00:2	0/1:0,142:32:142:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,104:31:104:1.00:2	0/1:0,96:31:96:1.00:2
chr7	51097216	rs17656599	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:44,39:31:83:0.470:2	0/1:30,24:32:54:0.444:2	./.	./.	0/1:59,60:30:119:0.504:2	./.	0/1:41,64:31:105:0.610:2	0/1:104,48:31:152:0.316:2	0/1:59,50:32:109:0.459:2	0/1:45,43:31:88:0.489:2	./.
chr7	51152954	rs374165084	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,52:31:105:0.495:2	0/1:36,26:31:62:0.419:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	51287470	rs801142	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:30:62:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,11:31:11:1.00:2	0/1:2,82:30:84:0.976:2	0/1:6,131:30:137:0.956:2	0/1:0,114:30:114:1.00:2	0/1:3,117:30:120:0.975:2	0/1:0,132:30:132:1.00:2	0/1:50,41:30:91:0.451:2	0/1:0,62:30:62:1.00:2	0/1:0,68:29:68:1.00:2
chr7	53103371	rs72598684	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:31:9:0.667:2	0/1:1,4:32:5:0.800:2	0/1:0,11:31:11:1.00:2	./.	./.	0/1:1,9:32:10:0.900:2	0/1:5,7:29:12:0.583:2	./.
chr7	53103382	rs72598685	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:32:15:0.533:2	0/1:4,5:33:9:0.556:2	0/1:0,17:32:17:1.00:2	./.	./.	0/1:3,9:34:12:0.750:2	0/1:5,7:31:12:0.583:2	./.
chr7	53103425	rs10229800	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,5:29:6:0.833:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	53103554	rs11238247	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,14:32:14:1.00:2	0/1:0,13:32:13:1.00:2	./.	0/1:17,19:32:36:0.528:2	0/1:20,7:31:27:0.259:2	./.	0/1:0,43:33:43:1.00:2	0/1:18,8:32:26:0.308:2	0/1:7,10:33:17:0.588:2	0/1:11,10:32:21:0.476:2	0/1:0,13:32:13:1.00:2
chr7	53103571	rs11238248	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,12:29:12:1.00:2	0/1:0,12:31:12:1.00:2	./.	0/1:12,13:30:25:0.520:2	0/1:15,6:29:21:0.286:2	./.	0/1:0,36:30:36:1.00:2	0/1:14,6:28:20:0.300:2	0/1:6,9:31:15:0.600:2	0/1:9,8:28:17:0.471:2	0/1:0,12:31:12:1.00:2
chr7	53103673	rs1184320	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	0/1:4,3:26:7:0.429:2	0/1:2,7:32:9:0.778:2	0/1:2,5:32:7:0.714:2	./.
chr7	53103946	rs12113170	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:30:17:1.00:2	0/1:0,19:32:19:1.00:2	./.	0/1:27,17:31:44:0.386:2	0/1:24,24:32:48:0.500:2	./.	0/1:2,36:32:38:0.947:2	0/1:14,9:31:23:0.391:2	0/1:21,15:32:36:0.417:2	0/1:17,6:30:24:0.261:2	0/1:0,26:30:26:1.00:2
chr7	53104078	rs72598686	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,23:30:34:0.676:2	0/1:26,18:31:44:0.409:2	0/1:0,38:30:38:1.00:2	./.	./.	0/1:12,23:32:35:0.657:2	0/1:19,25:31:44:0.568:2	./.
chr7	54621692	rs68106607	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,95:31:98:0.969:2	./.	./.	./.	./.	./.
chr7	55214348	rs2072454	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:2,44:32:46:0.957:2	0/1:0,30:31:30:1.00:2	./.	0/1:30,67:31:97:0.691:2	./.	./.	0/1:72,58:30:130:0.446:2	0/1:58,40:31:98:0.408:2	0/1:42,35:32:77:0.455:2	0/1:3,92:31:95:0.968:2	0/1:42,45:31:87:0.517:2
chr7	55229255	rs2227983	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,53:33:54:0.981:2	0/1:0,29:32:29:1.00:2	./.	0/1:32,34:32:66:0.515:2	0/1:32,45:32:77:0.584:2	./.	./.	0/1:48,27:32:75:0.360:2	./.	./.	0/1:19,22:32:41:0.537:2
chr7	55233089	rs17290169	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,39:32:73:0.534:2	./.	./.	./.	./.	./.	./.
chr7	55238087	rs10258429	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,84:31:169:0.497:2	./.	./.	./.	./.	0/1:88,82:32:170:0.482:2	./.	0/1:59,95:31:154:0.617:2
chr7	55238874	rs2227984	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,41:33:42:0.976:2	0/1:0,23:32:23:1.00:2	./.	0/1:17,26:32:43:0.605:2	0/1:0,38:32:38:1.00:2	./.	./.	0/1:30,20:33:50:0.400:2	./.	./.	0/1:33,42:33:75:0.560:2
chr7	55240789	rs138193597	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,4:31:24:0.167:2	./.	./.	./.	./.	./.	./.
chr7	55249063	rs1050171	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,91:30:91:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,134:31:134:1.00:2	0/1:108,78:31:186:0.419:2	0/1:0,144:30:145:1.00:2	0/1:83,71:31:154:0.461:2	0/1:2,179:31:181:0.989:2	0/1:0,103:32:103:1.00:2	0/1:49,36:31:85:0.424:2	0/1:0,87:30:87:1.00:2
chr7	55266417	rs1140475	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,83:30:85:0.976:2	0/1:0,58:29:58:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,118:30:118:1.00:2	0/1:0,112:29:112:1.00:2	0/1:0,130:29:130:1.00:2	0/1:64,62:29:126:0.492:2	0/1:0,122:28:122:1.00:2	0/1:0,122:30:122:1.00:2	0/1:56,52:29:108:0.481:2	0/1:0,99:29:99:1.00:2
chr7	55268916	rs2293347	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,53:31:109:0.486:2	0/1:51,49:30:100:0.490:2	./.	./.	./.	0/1:51,38:33:89:0.427:2	./.	./.
chr7	55433880	rs2272262	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,4:27:4:1.00:2	./.	./.	0/1:10,11:29:21:0.524:2	0/1:9,5:31:14:0.357:2	./.	./.
chr7	55433884	rs2272263	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	./.	0/1:10,11:31:21:0.524:2	0/1:9,5:34:14:0.357:2	./.	./.
chr7	55459563	rs2049497	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:28:2:1.00:2	0/1:26,5:30:31:0.161:2	./.	0/1:18,5:31:23:0.217:2	./.	./.	./.	./.	./.
chr7	55492967	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,7:27:165:0.042:2	./.	./.	./.
chr7	55540674	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,11:28:140:0.079:2	./.	./.	./.
chr7	55540707	rs815957	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,7:31:8:0.875:2	0/1:64,31:31:95:0.326:2	./.	0/1:49,37:32:86:0.430:2	./.	./.	./.	0/1:45,39:32:84:0.464:2	./.
chr7	55902230	rs146004414	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,20:33:45:0.444:2	./.	./.	./.	./.
chr7	55914293	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:30:53:0.075:2
chr7	56007336	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:32:108:0.037:2	./.	./.
chr7	56007576	rs34016595	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,6:32:24:0.250:2	0/1:12,12:32:24:0.500:2	0/1:0,5:31:5:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,14:31:14:1.00:2	./.	./.	./.	0/1:0,27:33:27:1.00:2	./.	0/1:17,25:31:42:0.595:2
chr7	56088811	rs78599516	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:158,10:32:168:0.060:2	./.	0/1:156,8:32:164:0.049:2	./.	0/1:141,11:33:152:0.072:2	./.	./.
chr7	56088825	rs74445297	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:32:12:0.250:2	./.	0/1:157,11:32:168:0.065:2	./.	0/1:171,10:32:181:0.055:2	./.	0/1:145,14:32:159:0.088:2	./.	./.
chr7	56088858	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:32:161:0.025:2	./.	./.	./.	./.
chr7	56088902	rs77329757	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	0/1:56,5:32:61:0.082:2	./.	0/1:60,5:30:65:0.077:2	./.	0/1:56,4:32:61:0.067:2	./.	./.
chr7	56125757	rs33922584	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:35:11:0.364:2	./.	./.	./.	./.	./.	0/1:53,26:34:79:0.329:2	./.	./.
chr7	56126360	rs2230197	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,44:29:100:0.440:2	0/1:33,32:30:65:0.492:2	./.	./.	./.	0/1:0,116:30:116:1.00:2	0/1:2,67:29:69:0.971:2	0/1:0,94:30:94:1.00:2	0/1:75,54:31:129:0.419:2	0/1:62,49:29:111:0.441:2	0/1:88,73:30:162:0.453:2
chr7	56129511	rs4927	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,177:30:182:0.978:2	./.	./.	./.	./.	./.
chr7	56129520	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:179,5:30:184:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr7	56136194	rs7808729	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,25:30:69:0.362:2	0/1:0,79:30:80:1.00:2	./.	0/1:36,22:30:58:0.379:2	./.
chr7	56136260	rs4245575	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,21:32:21:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,35:32:35:1.00:2	0/1:20,18:32:38:0.474:2	0/1:0,48:32:48:1.00:2
chr7	56148797	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:32:62:0.065:2	./.	./.	./.	./.	./.
chr7	56148807	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:30:65:0.062:2	./.	./.	./.	./.	./.
chr7	56148861	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:33:66:0.061:2	./.	./.	./.	./.	./.
chr7	56149362	rs11238393	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,11:32:40:0.275:2	0/1:1,30:30:31:0.968:2	./.	0/1:21,9:31:30:0.300:2	./.
chr7	56149410	rs12538444	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,15:31:50:0.300:2	0/1:0,32:30:32:1.00:2	./.	0/1:17,10:31:27:0.370:2	./.
chr7	56149939	rs13238521	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,20:32:34:0.588:2	./.	./.
chr7	56174115	rs10043	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,65:27:66:0.985:2	0/1:0,54:28:54:1.00:2	0/1:0,19:28:19:1.00:2	0/1:0,138:29:138:1.00:2	0/1:1,124:29:125:0.992:2	0/1:0,151:28:151:1.00:2	0/1:61,53:28:114:0.465:2	./.	0/1:0,108:29:108:1.00:2	0/1:51,36:29:87:0.414:2	0/1:0,60:27:60:1.00:2
chr7	57187701	rs200382632	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,42:32:72:0.583:2	0/1:32,15:33:47:0.319:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	57187725	.	G	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,5:31:61:0.083:2	0/1:90,9:29:100:0.091:2	0/1:48,9:31:57:0.158:2	0/1:74,4:31:78:0.051:2	./.	0/1:87,6:32:93:0.065:2	0/1:112,4:31:116:0.034:2
chr7	57187773	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:181,6:29:187:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr7	57187788	.	G	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:173,8:30:181:0.044:2	0/1:88,5:26:93:0.054:2	./.	0/1:173,11:32:184:0.060:2	0/1:119,10:31:130:0.078:2	0/1:174,14:30:188:0.074:2	0/1:138,19:32:157:0.121:2	0/1:176,16:30:192:0.083:2	0/1:173,9:31:182:0.049:2	0/1:167,13:31:180:0.072:2	0/1:175,14:29:189:0.074:2
chr7	57187799	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:189,8:31:197:0.041:2	0/1:110,4:32:114:0.035:2	./.	0/1:178,11:31:189:0.058:2	0/1:138,10:29:148:0.068:2	0/1:178,11:31:189:0.058:2	0/1:163,16:31:179:0.089:2	0/1:177,16:32:193:0.083:2	0/1:179,8:33:187:0.043:2	0/1:180,10:32:190:0.053:2	0/1:172,12:32:184:0.065:2
chr7	57187809	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:153,7:28:160:0.044:2	./.	./.	./.	./.	./.	0/1:185,4:33:189:0.021:2
chr7	57187829	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:169,7:31:176:0.040:2	./.	./.	./.	./.	./.	./.
chr7	57187872	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:138,8:27:147:0.055:2	./.	./.	0/1:182,6:31:188:0.032:2	./.	./.	./.	./.	./.	./.
chr7	57187883	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:140,7:28:147:0.048:2	./.	./.	0/1:181,5:31:186:0.027:2	./.	./.	./.	./.	./.	0/1:180,6:30:186:0.032:2
chr7	57188016	rs78588121	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,60:29:154:0.390:2	./.	./.	0/1:88,53:29:141:0.376:2	./.	./.	./.	0/1:121,69:29:190:0.363:2
chr7	57188144	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,7:31:58:0.121:2	./.	./.	./.	./.	./.
chr7	57188148	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,7:30:58:0.121:2	./.	./.	./.	./.	./.
chr7	57188200	rs373139776	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,3:32:41:0.073:2	./.	./.	./.	./.
chr7	57188526	rs62464801	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,65:30:168:0.389:2	./.	./.	0/1:109,61:30:170:0.359:2	./.	./.	./.	0/1:105,77:30:182:0.423:2
chr7	57188718	rs62464802	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,83:33:188:0.441:2	./.	./.	0/1:89,98:33:187:0.524:2	./.	./.	./.	0/1:104,81:33:185:0.438:2
chr7	57188736	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.	./.
chr7	57188737	.	A	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,7:29:197:0.036:2	0/1:182,9:28:191:0.047:2	./.	./.	./.	0/1:185,12:28:197:0.061:2	0/1:156,19:28:175:0.109:2	0/1:166,4:31:170:0.024:2	0/1:189,8:31:197:0.041:2	0/1:188,11:28:199:0.055:2	0/1:187,10:29:197:0.051:2
chr7	57188756	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:197:0.020:2	./.	./.
chr7	57188771	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,8:32:200:0.040:2	./.	./.	./.	./.	./.	./.
chr7	57194309	rs80009403	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,45:29:173:0.260:2	0/1:83,49:29:132:0.371:2	./.	./.	./.	./.
chr7	57194311	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:32:145:0.028:2	./.
chr7	57194338	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,5:31:196:0.026:2	./.
chr7	57522201	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:170,6:32:176:0.034:2	./.	./.	./.	./.	./.	./.
chr7	57522213	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:179,8:33:187:0.043:2	./.	./.	./.	./.	./.	./.
chr7	57522283	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,4:32:97:0.041:2	./.	./.	./.	./.	./.	./.
chr7	57528997	rs10272498	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:10,11:32:21:0.524:2	0/1:7,7:32:14:0.500:2	./.	./.	0/1:4,7:31:11:0.636:2	./.	0/1:13,6:32:19:0.316:2	./.	./.	./.	0/1:3,3:23:6:0.500:2
chr7	57529392	rs13235676	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:12,6:30:18:0.333:2	0/1:7,8:32:15:0.533:2	./.	./.	0/1:8,6:34:14:0.429:2	./.	0/1:6,10:33:16:0.625:2	./.	./.	./.	0/1:9,18:33:27:0.667:2
chr7	57529648	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,3:32:20:0.150:2
chr7	63529386	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,6:32:69:0.087:2	./.	./.	./.	./.	./.	./.	./.
chr7	63529956	rs4349869	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:32:64:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,73:32:73:1.00:2	0/1:58,68:31:126:0.540:2	0/1:0,91:32:91:1.00:2	./.	0/1:67,51:33:118:0.432:2	0/1:0,69:32:69:1.00:2	0/1:55,54:32:109:0.495:2
chr7	63537674	rs61739726	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,9:25:20:0.450:2	./.	./.	./.	./.	./.	./.
chr7	63537849	rs4717170	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,94:32:95:0.989:2	0/1:0,64:32:64:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,86:31:86:1.00:2	0/1:59,43:31:102:0.422:2	0/1:0,65:31:65:1.00:2	./.	0/1:76,57:33:133:0.429:2	0/1:0,77:32:77:1.00:2	0/1:97,55:32:153:0.362:2
chr7	63538609	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,5:33:40:0.125:2	./.	./.	./.	./.
chr7	63538638	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,5:31:34:0.147:2	./.	./.	./.	./.
chr7	63538736	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,3:32:37:0.081:2	./.	./.	0/1:72,5:32:77:0.065:2	0/1:57,3:34:60:0.050:2	./.	./.
chr7	63538777	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,4:30:33:0.121:2	./.	./.	0/1:60,4:29:64:0.063:2	./.	./.	./.
chr7	63538806	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,3:34:25:0.120:2	./.	./.	./.	./.	./.	./.
chr7	63538924	rs28360698	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,10:31:19:0.526:2	./.	./.	./.	./.	./.	./.
chr7	63673470	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:145,4:32:149:0.027:2	./.	./.	./.	./.	./.	./.
chr7	63673481	rs117854459	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,13:29:21:0.619:2	./.	./.	./.	./.	./.	0/1:98,86:29:184:0.467:2	./.	./.
chr7	63673505	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:177,9:31:186:0.048:2	./.	./.	./.	./.	./.	./.
chr7	63673513	rs183236398	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:180,5:32:185:0.027:2	./.	./.	./.	./.	./.	./.
chr7	63673517	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:174,8:31:183:0.044:2	./.	./.	0/1:176,6:31:182:0.033:2	./.	0/1:175,5:29:180:0.028:2	./.
chr7	63679733	rs10270226	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,185:32:186:0.995:2	0/1:0,117:32:117:1.00:2	0/1:0,22:30:22:1.00:2	0/1:91,69:32:160:0.431:2	0/1:43,51:31:94:0.543:2	0/1:76,84:31:160:0.525:2	0/1:86,4:32:90:0.044:2	0/1:0,165:32:165:1.00:2	0/1:0,191:33:191:1.00:2	0/1:62,91:32:154:0.595:2	0/1:90,97:32:187:0.519:2
chr7	63679738	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:33:165:0.024:2	./.
chr7	63679795	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.	./.	0/1:177,4:33:181:0.022:2	./.
chr7	63680098	rs4479992	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,19:30:48:0.413:2	./.	0/1:5,51:30:56:0.911:2	0/1:39,27:31:66:0.409:2	./.	0/1:35,33:31:68:0.485:2
chr7	63680099	rs4320434	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,19:30:48:0.396:2	./.	0/1:4,51:30:55:0.927:2	0/1:39,27:31:66:0.409:2	./.	0/1:35,33:30:68:0.485:2
chr7	63680209	rs370643549	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,10:32:31:0.323:2	./.	./.	./.
chr7	63680360	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,3:33:23:0.130:2	./.	./.	./.
chr7	63680401	rs10258764	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,6:32:12:0.500:2	./.	./.	./.	./.	./.	./.
chr7	63680426	rs201973254	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,7:33:18:0.389:2	0/1:4,9:32:13:0.692:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	63680663	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:32:11:0.273:2	./.	./.	./.	./.	./.	./.	./.
chr7	63720664	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,4:31:98:0.041:2	./.	./.	./.	./.	./.	./.
chr7	63720720	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:31:97:0.041:2	./.	./.	0/1:79,4:33:84:0.048:2	./.	./.
chr7	63720722	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:29:96:0.042:2	./.	./.	./.	./.	./.
chr7	63721251	rs12154540	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:33:10:1.00:2	./.	./.	./.	0/1:0,5:31:5:1.00:2	./.	./.	./.	./.	./.	./.
chr7	63726304	rs78910755	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,22:33:63:0.349:2	./.	./.	./.
chr7	63726370	rs17139320	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:29:15:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	63726493	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:119,4:30:123:0.033:2	./.	./.	./.	./.	./.	0/1:133,6:31:139:0.043:2	./.
chr7	63726506	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,4:32:108:0.037:2	./.	./.	./.	./.	./.	0/1:110,4:33:114:0.035:2	./.
chr7	63726509	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,4:31:103:0.039:2	./.	0/1:82,4:30:86:0.047:2	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.
chr7	63726993	rs10949885	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,7:32:15:0.467:2	./.	0/1:6,8:33:14:0.571:2	0/1:8,6:30:14:0.429:2	./.
chr7	63981563	rs10243954	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:29:27:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,5:31:5:1.00:2	0/1:29,10:31:39:0.256:2	0/1:0,26:27:26:1.00:2	./.	0/1:13,9:28:22:0.409:2	./.	0/1:26,28:30:54:0.519:2	0/1:0,23:30:23:1.00:2	0/1:37,23:29:60:0.383:2
chr7	63986829	rs73128772	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,13:33:35:0.371:2	./.	./.	0/1:12,6:32:18:0.333:2	./.	0/1:4,6:33:10:0.600:2	0/1:9,5:29:14:0.357:2	0/1:16,13:34:29:0.448:2
chr7	64152353	rs4718101	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,7:33:11:0.636:2	0/1:2,6:32:8:0.750:2	./.	0/1:14,11:32:25:0.440:2	0/1:6,8:32:14:0.571:2	0/1:0,13:33:13:1.00:2	./.	./.	0/1:14,7:34:21:0.333:2	0/1:7,4:31:11:0.364:2	0/1:4,12:33:16:0.750:2
chr7	64166802	rs73138709	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,57:31:104:0.548:2	0/1:70,59:30:129:0.457:2	./.	./.	./.
chr7	64167695	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,5:35:13:0.385:2	./.	./.
chr7	64168073	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.
chr7	64168806	rs4718103	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,8:33:13:0.615:2	0/1:7,6:33:13:0.462:2	./.	./.	./.	0/1:0,10:32:10:1.00:2	./.	./.	0/1:2,8:33:10:0.800:2	0/1:6,4:31:10:0.400:2	0/1:0,5:33:5:1.00:2
chr7	64169019	rs201020174	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,22:32:22:1.00:2	0/1:0,8:32:8:1.00:2	./.	0/1:0,27:31:27:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,19:31:19:1.00:2	./.	./.	0/1:0,17:32:17:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,18:32:18:1.00:2
chr7	64254901	rs11983033	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,6:31:16:0.375:2	0/1:6,5:32:11:0.455:2	0/1:2,3:31:5:0.600:2	0/1:0,21:30:21:1.00:2	0/1:11,5:27:16:0.313:2	0/1:16,7:30:23:0.304:2	./.	0/1:20,14:31:34:0.412:2	0/1:5,6:32:11:0.545:2	0/1:7,14:29:21:0.667:2	./.
chr7	64291333	rs4483043	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:31:102:1.00:2	0/1:0,68:31:68:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,135:31:135:1.00:2	0/1:0,142:30:142:1.00:2	0/1:0,105:30:105:1.00:2	0/1:0,158:30:158:1.00:2	0/1:0,182:30:183:1.00:2	0/1:0,148:31:148:1.00:2	0/1:0,146:31:146:1.00:2	0/1:0,161:31:161:1.00:2
chr7	64291976	rs10949946	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,53:32:53:1.00:2	0/1:1,33:32:34:0.971:2	./.	./.	0/1:10,11:31:21:0.524:2	0/1:34,17:31:51:0.333:2	0/1:0,30:31:30:1.00:2	0/1:24,19:32:43:0.442:2	0/1:23,33:32:56:0.589:2	0/1:17,33:32:50:0.660:2	0/1:0,73:31:73:1.00:2
chr7	64291987	rs35742014	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,24:32:45:0.533:2	./.	./.	./.	./.	./.	./.	./.
chr7	64291991	rs4236203	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:31:48:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,41:29:41:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,34:30:34:1.00:2	0/1:3,46:31:49:0.939:2	0/1:0,43:31:43:1.00:2	0/1:0,70:31:70:1.00:2
chr7	64378025	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,5:24:60:0.083:2	./.	./.	./.	./.	./.	./.	./.
chr7	64389089	rs2017252	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,18:28:18:1.00:2	0/1:0,5:29:5:1.00:2	./.	./.	0/1:6,8:29:14:0.571:2	0/1:12,10:29:22:0.455:2	0/1:2,10:29:12:0.833:2	0/1:9,4:30:13:0.308:2	0/1:8,10:31:18:0.556:2	./.	0/1:0,21:29:21:1.00:2
chr7	64438667	rs1404453	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,15:33:15:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,3:33:3:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,37:33:37:1.00:2
chr7	64439613	rs3807068	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,7:30:9:0.778:2	0/1:48,43:30:91:0.473:2	0/1:38,32:29:70:0.457:2	./.	./.	0/1:46,42:30:88:0.477:2	0/1:57,47:30:104:0.452:2	./.	./.
chr7	64439701	rs3807069	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:30:5:0.600:2	0/1:20,12:29:32:0.375:2	0/1:20,15:30:35:0.429:2	./.	./.	0/1:26,10:31:36:0.278:2	0/1:24,13:31:37:0.351:2	./.	./.
chr7	64863392	rs10265083	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,72:30:165:0.436:2	./.	0/1:83,58:30:141:0.411:2	./.	./.	./.	0/1:79,44:31:123:0.358:2	./.
chr7	64864607	rs10239197	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,25:31:55:0.455:2	0/1:11,12:31:23:0.522:2	0/1:14,21:30:35:0.600:2	./.	./.	./.	0/1:12,12:32:24:0.500:2	./.
chr7	65425894	rs9530	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:61,48:30:109:0.440:2	0/1:30,24:28:54:0.444:2	0/1:0,11:28:11:1.00:2	./.	0/1:0,99:28:99:1.00:2	0/1:80,73:28:153:0.477:2	0/1:0,99:29:99:1.00:2	0/1:1,114:29:115:0.991:2	0/1:61,63:30:124:0.508:2	./.	0/1:65,47:28:112:0.420:2
chr7	65429359	rs1061361	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:35,21:33:56:0.375:2	0/1:14,14:31:28:0.500:2	./.	./.	0/1:32,37:31:69:0.536:2	0/1:44,43:31:87:0.494:2	0/1:35,36:32:71:0.507:2	0/1:61,47:33:108:0.435:2	./.	./.	./.
chr7	65439610	rs200451572	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,11:16:77:0.145:2
chr7	65444766	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,10:13:64:0.156:2	./.
chr7	65546812	rs145138923	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,81:33:178:0.455:2	./.	./.
chr7	65551762	rs111407265	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,14:31:31:0.452:2	./.	./.	./.	./.	./.	./.
chr7	65551785	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,4:31:39:0.103:2	./.	./.	./.	./.	./.	./.
chr7	65579987	rs160639	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:33,18:33:51:0.353:2	0/1:18,12:31:30:0.400:2	./.	./.	0/1:42,48:31:90:0.533:2	0/1:43,33:32:76:0.434:2	0/1:54,39:31:93:0.419:2	0/1:50,35:31:85:0.412:2	./.	./.	./.
chr7	65705826	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:32:93:0.043:2	./.
chr7	65841981	rs6974355	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.
chr7	65842221	rs11765965	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:32:9:0.667:2	./.	./.	0/1:0,4:31:4:1.00:2	0/1:6,6:31:12:0.500:2	0/1:0,8:32:8:1.00:2	0/1:5,6:32:11:0.545:2	./.	./.	./.
chr7	65842545	rs200497102	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:25:9:0.333:2	0/1:1,6:28:7:0.857:2	0/1:0,4:30:4:1.00:2	./.	./.	./.
chr7	66098384	rs3764904	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:33:15:0.400:2	./.	./.	./.	./.	0/1:51,52:31:103:0.505:2	0/1:48,50:32:98:0.510:2	./.	./.
chr7	66103289	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:31:90:0.044:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	66147057	rs1882655	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,7:28:15:0.467:2	0/1:5,14:28:19:0.737:2	./.	0/1:0,49:27:49:1.00:2	0/1:10,10:26:20:0.500:2	0/1:11,18:28:29:0.621:2	0/1:11,12:28:23:0.522:2	0/1:24,6:26:30:0.200:2	0/1:0,26:28:26:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,10:26:10:1.00:2
chr7	66147101	rs2420827	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:4,5:31:9:0.556:2	0/1:4,10:27:14:0.714:2	./.	0/1:6,21:30:27:0.778:2	./.	0/1:5,10:32:15:0.667:2	./.	./.	0/1:1,10:31:11:0.909:2	0/1:0,16:32:16:1.00:2	0/1:1,2:35:3:0.667:2
chr7	66147110	rs3800823	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:4,6:26:10:0.600:2	0/1:2,7:27:9:0.778:2	./.	0/1:3,16:30:20:0.842:2	./.	0/1:4,8:28:12:0.667:2	./.	./.	0/1:2,8:29:10:0.800:2	0/1:0,14:30:14:1.00:2	./.
chr7	66147149	rs3800822	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:31:4:1.00:2	0/1:7,3:28:10:0.300:2	0/1:4,4:32:9:0.500:2	./.	./.	0/1:0,4:30:4:1.00:2	0/1:0,6:33:6:1.00:2	./.
chr7	66147178	rs3800820	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.	0/1:5,3:31:8:0.375:2	./.	./.	./.	0/1:0,3:29:3:1.00:2	./.
chr7	66147656	rs2003301	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:2,5:33:7:0.714:2	0/1:1,2:32:3:0.667:2	./.	0/1:0,5:32:5:1.00:2	./.	./.	./.	./.	0/1:0,3:34:3:1.00:2	0/1:0,4:34:4:1.00:2	0/1:0,2:33:2:1.00:2
chr7	66147746	rs2003300	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,8:27:11:0.727:2	0/1:2,3:30:5:0.600:2	0/1:0,2:30:2:1.00:2	0/1:0,12:25:12:1.00:2	./.	0/1:7,3:26:10:0.300:2	./.	0/1:16,5:25:21:0.238:2	0/1:0,8:29:8:1.00:2	0/1:0,13:28:13:1.00:2	./.
chr7	66270306	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,6:33:145:0.041:2	./.	./.	./.
chr7	66453460	rs73151675	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,32:32:47:0.681:2	./.	./.	./.	0/1:48,26:32:74:0.351:2
chr7	66453476	rs79344818	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,39:32:50:0.780:2	./.	./.	./.	./.	./.
chr7	66459256	rs1061695	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.	./.	./.	0/1:51,36:33:87:0.414:2	./.	0/1:54,40:34:94:0.426:2	./.	./.
chr7	66459273	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,4:30:76:0.053:2	./.	./.	./.	./.	./.	./.	./.
chr7	66463067	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,6:31:114:0.053:2	./.	./.	./.	./.	./.	./.
chr7	66463079	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:114,6:33:120:0.050:2	./.	./.	./.	./.	./.	./.
chr7	66463938	rs11547292	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,12:32:28:0.429:2	0/1:16,15:32:31:0.484:2	./.	./.
chr7	66479413	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,5:28:199:0.025:2	./.	./.	./.	./.
chr7	66482880	rs147693115	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,5:30:118:0.042:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	66483114	rs151211596	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,66:32:155:0.429:2	./.	./.
chr7	66648157	rs4145350	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:31:8:0.375:2	0/1:55,35:30:90:0.389:2	0/1:54,45:31:99:0.455:2	./.	0/1:63,41:31:104:0.394:2	0/1:87,48:31:136:0.356:2	./.	0/1:43,31:31:74:0.419:2	./.
chr7	66648199	rs55756354	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,36:31:83:0.434:2	0/1:62,34:30:96:0.354:2	./.	0/1:58,43:31:101:0.426:2	0/1:70,49:31:119:0.412:2	./.	0/1:37,26:31:63:0.413:2	./.
chr7	66660172	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,4:32:192:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr7	66660242	rs2949097	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:123,31:30:154:0.201:2	0/1:142,29:30:171:0.170:2	./.	0/1:133,23:30:156:0.147:2	0/1:152,28:28:181:0.156:2	./.	0/1:107,27:30:134:0.201:2	./.
chr7	66660247	rs55673383	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,3:33:21:0.143:2	0/1:124,31:33:155:0.200:2	0/1:131,26:32:157:0.166:2	./.	0/1:130,21:33:151:0.139:2	0/1:162,27:32:189:0.143:2	./.	0/1:116,28:34:144:0.194:2	./.
chr7	66703328	rs139935023	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:30,12:31:42:0.286:2	0/1:137,52:32:189:0.275:2	0/1:138,58:31:196:0.296:2	./.	0/1:153,39:32:192:0.203:2	0/1:140,50:32:190:0.263:2	./.	0/1:138,54:31:192:0.281:2	./.
chr7	66774604	rs1045513	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,22:33:45:0.489:2	0/1:7,13:32:20:0.650:2	./.	0/1:20,18:32:38:0.474:2	0/1:10,13:32:23:0.565:2	0/1:23,18:33:41:0.439:2	0/1:0,38:32:38:1.00:2	0/1:25,12:31:37:0.324:2	0/1:34,22:32:56:0.393:2	0/1:11,21:33:32:0.656:2	0/1:26,14:33:40:0.350:2
chr7	66785137	rs9443	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:61,62:33:123:0.504:2	0/1:46,22:33:68:0.324:2	0/1:7,14:32:21:0.667:2	./.	0/1:47,39:33:86:0.453:2	0/1:47,39:32:86:0.453:2	0/1:42,33:33:76:0.440:2	./.	0/1:85,46:33:131:0.351:2	0/1:45,34:32:79:0.430:2	0/1:96,48:33:144:0.333:2
chr7	70228020	rs2293507	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:22,13:31:35:0.371:2	0/1:13,9:32:22:0.409:2	./.	./.	./.	./.	./.	./.	./.	0/1:31,14:31:45:0.311:2	./.
chr7	70228139	rs2293508	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,15:27:32:0.469:2	0/1:5,8:27:13:0.615:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	70229813	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,16:14:126:0.127:2	./.	./.	./.	./.
chr7	70229821	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,9:19:114:0.079:2	./.	./.	./.	0/1:99,11:15:110:0.100:2	./.	./.
chr7	70250966	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:31:118:0.034:2	./.	./.	./.	./.	./.
chr7	70252311	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,4:30:30:0.133:2	./.	./.	./.
chr7	70597884	rs61741535	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,3:34:25:0.120:2
chr7	70853230	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:31:108:0.037:2	./.	./.	./.
chr7	70885993	rs61737661	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,24:31:59:0.407:2	./.	0/1:25,27:30:52:0.519:2	./.	./.	./.	./.	./.
chr7	70886038	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:31:36:0.111:2	./.
chr7	71130522	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:29:100:0.040:2	./.
chr7	72023806	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,5:27:131:0.038:2	./.
chr7	72040671	rs200258949	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:54,6:30:60:0.100:2	0/1:171,24:31:196:0.123:2	0/1:172,27:31:199:0.136:2	./.	0/1:161,35:31:196:0.179:2	0/1:166,27:33:193:0.140:2	./.	0/1:161,32:32:193:0.166:2	./.
chr7	72081774	rs3015854	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,5:30:15:0.333:2	0/1:148,28:30:176:0.159:2	0/1:126,20:28:146:0.137:2	./.	0/1:134,21:30:155:0.135:2	0/1:162,34:30:196:0.173:2	./.	0/1:122,22:31:144:0.153:2	./.
chr7	72081809	rs201876441	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:156,14:29:170:0.082:2	0/1:143,9:27:152:0.059:2	./.	0/1:138,9:27:147:0.061:2	0/1:144,14:27:158:0.089:2	./.	0/1:141,7:26:148:0.047:2	./.
chr7	72093957	rs28535321	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,23:29:73:0.315:2	./.	./.	./.	0/1:60,35:30:95:0.368:2	./.	./.	0/1:34,10:27:44:0.227:2
chr7	72178602	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:191,5:29:196:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr7	72193864	rs3015858	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,39:32:106:0.368:2	./.	./.	0/1:49,28:31:77:0.364:2
chr7	72193867	rs117110249	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,36:31:105:0.343:2	./.	./.	0/1:47,27:29:74:0.365:2
chr7	72193868	rs2960999	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,39:30:103:0.379:2	./.	./.	0/1:47,28:29:75:0.373:2
chr7	72286028	rs2286318	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:33:95:0.042:2	./.	./.	./.
chr7	72297549	rs73131518	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:30:8:0.375:2	0/1:70,28:31:98:0.286:2	0/1:1,25:31:26:0.962:2	0/1:65,37:30:102:0.363:2	./.	0/1:49,31:31:80:0.388:2	./.	./.	./.
chr7	72409197	rs112174498	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,13:32:27:0.481:2	./.	./.	0/1:96,102:32:198:0.515:2	./.	./.	./.	./.	./.
chr7	72409869	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:32:130:0.031:2	./.	0/1:194,4:32:198:0.020:2	./.	./.
chr7	72409870	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:31:133:0.030:2	./.	0/1:195,4:33:199:0.020:2	./.	./.
chr7	72409881	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:31:156:0.026:2	./.	0/1:193,4:33:197:0.020:2	./.	./.
chr7	72410455	rs375904863	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,23:30:196:0.117:2	./.	./.	./.	./.
chr7	72412427	rs201876140	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:102,7:28:109:0.064:2	./.	./.	./.	0/1:70,7:28:78:0.091:2	0/1:113,5:29:118:0.042:2	./.	0/1:137,4:31:143:0.028:2	./.	0/1:113,4:30:118:0.034:2	./.
chr7	72412591	rs201184041	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:128,10:28:138:0.072:2	0/1:113,8:28:122:0.066:2	./.	0/1:164,11:29:175:0.063:2	0/1:167,9:25:176:0.051:2	0/1:167,7:27:175:0.040:2	0/1:169,11:27:180:0.061:2	0/1:166,10:27:176:0.057:2	0/1:170,9:30:179:0.050:2	0/1:85,48:29:134:0.361:2	0/1:132,8:29:140:0.057:2
chr7	72412705	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:32:193:0.026:2	./.	./.
chr7	72412783	rs200902059	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:144,36:30:182:0.200:2	./.	./.	./.	./.	./.	./.
chr7	72412920	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:31:100:0.040:2	./.	./.	./.	0/1:95,4:29:99:0.040:2	./.
chr7	72413036	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:163,31:31:194:0.160:2	./.	./.	./.	./.	./.	./.	./.
chr7	72413322	rs199710246	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,15:31:191:0.079:2	0/1:96,18:31:114:0.158:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	72413423	rs71554686	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:83,16:30:99:0.162:2	0/1:49,8:32:57:0.140:2	./.	0/1:73,27:31:100:0.270:2	./.	0/1:93,19:30:112:0.170:2	0/1:41,26:31:67:0.388:2	0/1:67,21:31:88:0.239:2	./.	./.	0/1:49,13:31:62:0.210:2
chr7	72413443	rs62463429	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,25:31:68:0.368:2	0/1:27,13:31:40:0.325:2	0/1:3,4:32:7:0.571:2	0/1:38,33:30:71:0.465:2	0/1:36,18:29:54:0.333:2	0/1:44,26:29:70:0.371:2	0/1:27,21:29:48:0.438:2	0/1:37,28:28:65:0.431:2	0/1:22,24:29:46:0.522:2	0/1:25,22:30:47:0.468:2	0/1:19,28:29:47:0.596:2
chr7	72413487	rs151064930	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,28:31:56:0.500:2	0/1:67,6:31:73:0.082:2	./.	./.	0/1:49,8:33:57:0.140:2	./.	./.
chr7	72413552	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:140,5:26:145:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr7	72413581	rs71554687	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,36:30:97:0.371:2	0/1:42,16:31:58:0.276:2	0/1:26,8:31:34:0.235:2	0/1:110,39:31:149:0.262:2	0/1:133,16:31:149:0.107:2	0/1:121,45:30:167:0.271:2	0/1:135,36:30:171:0.211:2	0/1:137,40:31:177:0.226:2	0/1:114,21:32:135:0.156:2	0/1:87,42:31:129:0.326:2	0/1:77,33:30:110:0.300:2
chr7	72413593	rs71554688	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:67,32:32:99:0.323:2	0/1:41,19:32:60:0.317:2	0/1:19,6:32:25:0.240:2	0/1:103,36:32:140:0.259:2	0/1:126,17:32:143:0.119:2	0/1:107,44:32:151:0.291:2	0/1:129,39:32:168:0.232:2	0/1:132,46:32:178:0.258:2	0/1:104,16:32:120:0.133:2	0/1:80,40:32:120:0.333:2	0/1:76,30:31:106:0.283:2
chr7	72413649	rs149592268	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,21:31:68:0.309:2
chr7	72413874	rs199633193	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,79:30:81:0.975:2	0/1:1,56:29:57:0.982:2	0/1:7,6:32:13:0.462:2	0/1:3,103:29:106:0.972:2	0/1:152,38:29:190:0.200:2	0/1:150,28:29:178:0.157:2	0/1:4,77:29:81:0.951:2	./.	0/1:1,102:30:103:0.990:2	0/1:131,44:30:176:0.251:2	0/1:128,49:27:177:0.277:2
chr7	72418919	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	72418963	rs7056	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:32:58:1.00:2	0/1:0,37:32:37:1.00:2	0/1:1,2:31:3:0.667:2	0/1:2,42:32:44:0.955:2	0/1:28,29:31:57:0.509:2	0/1:42,26:31:68:0.382:2	0/1:0,52:32:52:1.00:2	./.	0/1:25,38:33:63:0.603:2	0/1:22,25:31:47:0.532:2	0/1:35,37:33:72:0.514:2
chr7	72418992	rs9955	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,31:33:76:0.408:2	0/1:32,19:31:51:0.373:2	./.
chr7	72419207	rs371247309	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:119,6:30:125:0.048:2	0/1:159,5:32:164:0.030:2	./.	./.	./.	./.	./.	./.
chr7	72419438	rs140671732	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,59:29:134:0.440:2	./.	./.	0/1:69,71:29:141:0.507:2	./.	./.	./.	./.
chr7	72419965	rs143636455	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:31:102:0.039:2	./.
chr7	72420001	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:126,24:32:150:0.160:2	0/1:114,8:31:122:0.066:2	0/1:113,8:32:121:0.066:2	./.	0/1:139,11:32:150:0.073:2	./.	0/1:77,6:32:83:0.072:2	./.
chr7	72420448	rs400282	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:115,5:29:120:0.042:2	0/1:67,8:26:75:0.107:2	./.	0/1:118,7:28:125:0.056:2	0/1:100,8:26:108:0.074:2	0/1:115,18:28:133:0.135:2	0/1:121,6:27:127:0.047:2	0/1:113,12:27:125:0.096:2	0/1:94,6:28:100:0.060:2	0/1:120,13:26:133:0.098:2	0/1:92,8:27:100:0.080:2
chr7	72420467	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,14:32:162:0.086:2	0/1:109,7:31:116:0.060:2	./.	./.	./.	./.	./.	./.
chr7	72420660	rs148993516	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:136,26:33:162:0.160:2	0/1:144,41:33:185:0.222:2	./.	0/1:156,39:32:196:0.200:2	0/1:158,34:32:192:0.177:2	./.	./.	./.	./.	0/1:146,31:33:177:0.175:2	./.
chr7	72420679	rs142919447	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,56:32:180:0.311:2	./.
chr7	72420689	rs371529868	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:32:142:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,6:33:162:0.037:2	./.
chr7	72431877	.	T	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:132,46:31:178:0.258:2	0/1:139,50:32:189:0.265:2	./.	./.	0/1:167,30:31:197:0.152:2	0/1:159,32:33:191:0.168:2	./.	0/1:158,33:31:191:0.173:2	./.	0/1:112,77:32:189:0.407:2	./.
chr7	72431889	rs199887265	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:151,42:32:193:0.218:2	0/1:165,32:32:197:0.162:2	./.	./.	./.	./.	./.	./.
chr7	72431899	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,38:33:193:0.197:2	0/1:142,49:31:191:0.257:2	./.
chr7	72436307	rs200783899	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,41:31:156:0.263:2	0/1:93,40:30:133:0.301:2	0/1:72,25:31:97:0.258:2
chr7	72436652	rs201028940	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,44:27:44:1.00:2	0/1:0,16:26:16:1.00:2	./.	0/1:1,17:27:19:0.944:2	./.	0/1:166,6:28:172:0.035:2	0/1:7,10:26:18:0.588:2	./.	0/1:0,11:29:11:1.00:2	0/1:2,23:26:25:0.920:2	0/1:86,17:25:103:0.165:2
chr7	72469648	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:169,25:32:194:0.129:2	./.	./.	./.	./.	./.	./.	./.
chr7	72469999	rs200256473	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:142,37:30:179:0.207:2	0/1:154,40:31:194:0.206:2	./.	./.	0/1:174,21:30:195:0.108:2	0/1:155,37:29:192:0.193:2	./.	0/1:164,29:29:194:0.150:2	0/1:132,68:30:200:0.340:2	0/1:59,123:30:182:0.676:2	./.
chr7	72470313	rs79470170	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:42,10:31:52:0.192:2	0/1:25,4:33:29:0.138:2	./.	./.	0/1:61,13:32:74:0.176:2	0/1:188,8:32:196:0.041:2	./.	0/1:80,10:31:90:0.111:2	0/1:42,12:33:54:0.222:2	0/1:25,24:32:49:0.490:2	./.
chr7	72470942	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:184,14:32:198:0.071:2	./.	./.	./.	./.	./.	./.
chr7	72717933	rs11544043	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,34:30:94:0.362:2	./.	./.	0/1:28,29:31:57:0.509:2	0/1:71,62:30:133:0.466:2	./.	./.	0/1:24,18:30:43:0.429:2
chr7	72719019	rs35747107	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:125,59:33:184:0.321:2	0/1:90,39:32:129:0.302:2	./.	0/1:135,51:32:187:0.274:2	0/1:123,39:31:163:0.241:2	./.	./.	./.	./.	0/1:128,55:33:183:0.301:2	./.
chr7	72719038	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,27:33:167:0.162:2	./.
chr7	72721660	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,5:31:42:0.119:2	./.
chr7	72721683	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,5:31:45:0.111:2	./.
chr7	72721702	rs373433551	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,5:31:48:0.104:2	./.
chr7	72732885	rs140746141	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,84:32:178:0.472:2	./.	./.	./.	./.	./.	./.
chr7	72738749	rs28626137	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:29:62:1.00:2	0/1:0,37:29:37:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,134:29:134:1.00:2	0/1:12,136:29:148:0.919:2	0/1:7,106:28:113:0.938:2	0/1:0,129:28:129:1.00:2	0/1:17,108:29:125:0.864:2	0/1:0,65:29:65:1.00:2	0/1:0,101:28:101:1.00:2	0/1:1,66:28:67:0.985:2
chr7	72738762	rs6980258	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:31:60:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,7:32:7:1.00:2	0/1:1,122:31:124:0.992:2	0/1:14,135:31:149:0.906:2	0/1:9,97:30:107:0.915:2	0/1:0,119:30:119:1.00:2	0/1:21,106:31:127:0.835:2	0/1:0,54:31:54:1.00:2	0/1:4,94:31:98:0.959:2	0/1:1,62:31:63:0.984:2
chr7	72738763	rs6980124	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:32:60:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,125:32:125:1.00:2	0/1:14,135:31:149:0.906:2	0/1:9,97:31:107:0.915:2	0/1:0,119:31:119:1.00:2	0/1:20,108:31:128:0.844:2	0/1:0,55:32:55:1.00:2	0/1:4,95:31:99:0.960:2	0/1:1,62:31:63:0.984:2
chr7	72744195	rs3950376	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,3:34:73:0.041:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	72754645	rs56301507	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,24:29:49:0.490:2	./.	./.	0/1:22,20:31:42:0.476:2
chr7	72850178	rs1178947	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,37:32:106:0.349:2	./.	0/1:35,29:32:64:0.453:2
chr7	72880650	rs139629209	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,75:30:197:0.381:2	./.	./.
chr7	72891754	rs2074754	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,41:33:90:0.456:2	0/1:33,25:32:58:0.431:2	0/1:0,10:31:10:1.00:2	0/1:53,50:33:103:0.485:2	./.	0/1:0,112:32:112:1.00:2	./.	0/1:69,76:33:145:0.524:2	0/1:55,63:33:118:0.534:2	0/1:59,47:33:106:0.443:2	0/1:95,34:33:129:0.264:2
chr7	72984850	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,4:31:34:0.118:2
chr7	72985148	rs35607697	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:6,15:29:21:0.714:2	0/1:7,9:32:16:0.563:2	./.	0/1:10,9:31:19:0.474:2	./.	./.	./.	./.	./.	0/1:13,7:32:20:0.350:2	./.
chr7	72987658	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:34:172:0.023:2
chr7	72992858	rs76029572	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,69:32:123:0.561:2	./.	./.	./.	./.
chr7	73010515	rs368464824	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,21:31:47:0.447:2	./.
chr7	73010754	rs61738649	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,15:29:44:0.341:2
chr7	73013901	rs13235543	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,16:33:46:0.348:2	./.	./.
chr7	73020301	rs799157	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,23:28:23:1.00:2	0/1:0,20:28:20:1.00:2	./.	0/1:0,46:29:46:1.00:2	0/1:42,36:29:79:0.462:2	0/1:0,28:28:28:1.00:2	0/1:2,51:30:53:0.962:2	0/1:43,49:29:92:0.533:2	0/1:0,47:29:47:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,40:29:40:1.00:2
chr7	73020337	rs3812316	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,18:31:44:0.409:2	./.	./.
chr7	73038775	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.
chr7	73097238	rs1569062	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:28:4:1.00:2	./.	./.	0/1:4,58:30:62:0.935:2	0/1:28,18:30:46:0.391:2	./.	./.	./.	0/1:15,15:30:30:0.500:2
chr7	73097654	rs1128349	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,14:30:32:0.438:2	0/1:0,11:33:11:1.00:2	0/1:10,9:33:19:0.474:2	0/1:14,9:31:23:0.391:2
chr7	73097720	rs28494095	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,20:31:33:0.606:2	0/1:28,21:31:49:0.429:2	./.	0/1:19,12:33:31:0.387:2	0/1:15,22:32:37:0.595:2	./.	./.	./.
chr7	73097948	rs11544046	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:29:6:0.500:2	./.	./.	0/1:5,3:32:8:0.375:2	./.	./.	./.	./.	./.	./.
chr7	73108310	rs2293487	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:30:11:1.00:2	./.	./.	0/1:0,42:29:42:1.00:2	0/1:41,18:30:59:0.305:2	./.	./.	./.	0/1:25,26:30:51:0.510:2
chr7	73115201	rs41271241	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,14:31:24:0.583:2	0/1:8,4:32:12:0.333:2	./.	0/1:13,3:32:16:0.188:2	0/1:11,17:30:28:0.607:2	./.	./.	./.
chr7	73122923	rs2228607	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:30,15:28:45:0.333:2	0/1:19,6:29:25:0.240:2	./.	0/1:35,36:27:71:0.507:2	./.	./.	./.	0/1:43,44:27:87:0.506:2	0/1:0,45:28:45:1.00:2	0/1:0,35:27:35:1.00:2	0/1:44,19:27:63:0.302:2
chr7	73122977	rs2229854	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,47:31:93:0.505:2	0/1:75,30:32:105:0.286:2	./.	0/1:58,59:31:117:0.504:2	0/1:56,51:31:107:0.477:2	./.	./.	./.
chr7	73133974	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.
chr7	73151644	rs112580831	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,42:29:42:1.00:2	0/1:0,23:29:23:1.00:2	./.	0/1:0,52:31:52:1.00:2	0/1:28,30:29:58:0.517:2	0/1:22,18:29:40:0.450:2	0/1:57,40:29:97:0.412:2	0/1:40,44:28:84:0.524:2	0/1:44,24:30:68:0.353:2	0/1:0,45:30:45:1.00:2	./.
chr7	73246278	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,9:31:26:0.346:2	./.	./.
chr7	73246461	rs1127155	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,95:32:97:0.979:2	0/1:0,62:32:62:1.00:2	0/1:2,3:32:5:0.600:2	0/1:67,75:33:142:0.528:2	0/1:0,127:31:127:1.00:2	0/1:0,139:32:139:1.00:2	0/1:1,133:32:134:0.993:2	0/1:102,70:31:172:0.407:2	0/1:2,103:32:105:0.981:2	0/1:79,46:32:125:0.368:2	0/1:0,116:31:117:1.00:2
chr7	73246496	rs1127156	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,114:30:115:0.991:2	0/1:0,93:31:94:1.00:2	0/1:15,5:31:20:0.250:2	0/1:82,93:30:176:0.531:2	0/1:1,188:30:189:0.995:2	0/1:0,187:30:187:1.00:2	0/1:3,183:30:186:0.984:2	0/1:116,80:30:197:0.408:2	0/1:0,162:31:162:1.00:2	0/1:93,61:31:154:0.396:2	0/1:0,136:31:136:1.00:2
chr7	73246555	rs11316	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,144:33:145:0.993:2	0/1:0,98:32:98:1.00:2	0/1:22,10:33:32:0.313:2	0/1:83,96:33:179:0.536:2	0/1:3,169:33:172:0.983:2	0/1:0,162:33:162:1.00:2	0/1:2,165:33:169:0.988:2	0/1:109,68:33:177:0.384:2	0/1:0,178:34:178:1.00:2	0/1:97,67:33:164:0.409:2	0/1:0,166:33:166:1.00:2
chr7	73249165	rs13246460	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:30:41:1.00:2	0/1:0,34:31:34:1.00:2	0/1:9,4:32:13:0.308:2	0/1:30,22:30:52:0.423:2	0/1:0,60:29:60:1.00:2	0/1:1,62:30:63:0.984:2	0/1:0,49:30:49:1.00:2	0/1:31,33:30:65:0.516:2	0/1:0,69:30:69:1.00:2	0/1:17,24:30:41:0.585:2	0/1:0,47:31:47:1.00:2
chr7	73249299	rs13232463	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,31:33:31:1.00:2	0/1:0,20:33:20:1.00:2	./.	0/1:34,8:32:42:0.190:2	0/1:1,30:32:31:0.968:2	0/1:0,37:33:37:1.00:2	0/1:0,26:32:26:1.00:2	0/1:29,19:33:48:0.396:2	0/1:0,46:33:46:1.00:2	0/1:23,11:33:34:0.324:2	0/1:0,17:33:17:1.00:2
chr7	73254812	rs13241921	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,35:27:36:0.972:2	0/1:0,23:28:23:1.00:2	./.	0/1:39,22:28:61:0.361:2	0/1:0,31:27:31:1.00:2	0/1:0,38:27:38:1.00:2	0/1:0,31:29:31:1.00:2	0/1:41,19:28:60:0.317:2	0/1:0,33:29:33:1.00:2	0/1:29,18:27:47:0.383:2	0/1:0,38:27:38:1.00:2
chr7	73256367	rs183012362	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,16:29:30:0.533:2	./.	./.	./.	./.	./.	./.
chr7	73275565	rs11770052	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,3:30:18:0.167:2	./.	./.	0/1:17,13:28:30:0.433:2	0/1:1,30:29:31:0.968:2	0/1:0,16:28:16:1.00:2	0/1:0,26:29:26:1.00:2	0/1:37,13:30:50:0.260:2	0/1:0,37:30:37:1.00:2	0/1:15,18:31:33:0.545:2	0/1:1,39:30:40:0.975:2
chr7	73279361	rs61742124	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:63,44:32:107:0.411:2	0/1:26,29:32:55:0.527:2	./.	0/1:99,64:31:163:0.393:2	./.	./.	./.	0/1:96,71:32:167:0.425:2	./.	0/1:72,39:32:111:0.351:2	./.
chr7	73279482	rs13227841	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,15:31:26:0.577:2	0/1:7,6:28:13:0.462:2	0/1:1,3:29:4:0.750:2	0/1:20,14:30:34:0.412:2	0/1:0,19:28:19:1.00:2	0/1:0,26:29:26:1.00:2	0/1:1,14:29:15:0.933:2	0/1:15,13:28:28:0.464:2	0/1:0,17:29:17:1.00:2	0/1:10,7:30:17:0.412:2	0/1:0,18:29:18:1.00:2
chr7	73279659	rs73142829	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:32:16:0.563:2	./.	./.	0/1:61,53:32:114:0.465:2	./.	./.	./.	./.	0/1:41,40:31:81:0.494:2
chr7	73280020	rs1136647	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,80:32:132:0.606:2	0/1:34,41:31:75:0.547:2	0/1:15,7:32:22:0.318:2	0/1:83,56:31:139:0.403:2	0/1:2,183:31:185:0.989:2	0/1:88,63:31:151:0.417:2	0/1:2,163:31:165:0.988:2	0/1:92,90:31:182:0.495:2	0/1:0,160:32:160:1.00:2	0/1:72,51:31:123:0.415:2	0/1:71,51:31:122:0.418:2
chr7	73449760	rs144223231	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,45:32:88:0.511:2	./.
chr7	73462497	rs200621910	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:76,6:22:82:0.073:2	./.	./.	0/1:104,21:17:125:0.168:2	0/1:120,27:11:147:0.184:2	0/1:105,25:14:130:0.192:2	0/1:112,23:11:135:0.170:2	0/1:113,30:12:143:0.210:2	./.	0/1:63,8:21:71:0.113:2	0/1:78,7:22:85:0.082:2
chr7	73470714	rs2071307	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,78:30:78:1.00:2	0/1:0,47:31:47:1.00:2	./.	0/1:57,58:30:115:0.504:2	0/1:84,55:30:139:0.396:2	0/1:55,37:31:92:0.402:2	0/1:74,53:30:127:0.417:2	0/1:3,147:30:150:0.980:2	0/1:60,49:30:109:0.450:2	0/1:4,97:31:101:0.960:2	0/1:65,52:31:117:0.444:2
chr7	73472040	rs199732041	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,11:12:57:0.193:2
chr7	73474825	rs17855988	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,81:29:183:0.443:2	0/1:111,84:29:195:0.431:2	./.	./.	./.
chr7	73480258	rs45618836	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,3:28:13:0.231:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	73521379	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:33:6:0.500:2	./.	./.	./.	./.
chr7	73535503	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,9:20:77:0.117:2	./.	./.	./.	./.	./.	./.	./.
chr7	73588742	rs202096828	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:32:111:0.036:2	./.	./.	./.
chr7	73753250	rs539518	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,6:28:7:1.00:2	0/1:0,5:27:5:1.00:2	./.	0/1:5,4:29:9:0.444:2	0/1:0,9:30:9:1.00:2	0/1:3,5:29:8:0.625:2	0/1:0,5:28:5:1.00:2	0/1:1,23:29:24:0.958:2	0/1:8,7:29:15:0.467:2	0/1:0,12:25:12:1.00:2	0/1:0,4:23:4:1.00:2
chr7	73771749	rs75980392	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,17:26:74:0.230:2	./.	0/1:12,4:21:16:0.250:2	0/1:70,32:23:102:0.314:2	0/1:89,42:22:131:0.321:2	0/1:85,25:24:110:0.227:2	0/1:81,32:22:113:0.283:2	0/1:99,25:23:124:0.202:2	0/1:80,21:21:101:0.208:2	0/1:73,27:24:100:0.270:2	0/1:66,22:25:88:0.250:2
chr7	73791084	rs199947783	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,21:31:43:0.488:2	0/1:15,16:31:31:0.516:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	73814749	rs2522943	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:28:50:1.00:2	0/1:0,41:28:41:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,78:28:78:1.00:2	0/1:0,95:28:95:1.00:2	0/1:48,48:28:96:0.500:2	0/1:0,72:27:72:1.00:2	0/1:0,83:28:83:1.00:2	0/1:0,67:30:67:1.00:2	0/1:0,60:28:60:1.00:2	0/1:0,50:27:50:1.00:2
chr7	73929826	rs111256098	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,29:29:75:0.392:2	./.	./.	./.	./.	./.
chr7	73932560	rs17851629	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,16:31:45:0.356:2	0/1:9,10:32:19:0.526:2	./.	0/1:0,12:31:12:1.00:2	./.	./.	./.	./.
chr7	73938449	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,33:32:83:0.398:2	./.	./.	./.
chr7	73944095	rs61744518	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,24:33:46:0.522:2	0/1:10,15:32:25:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	73944185	rs2240357	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,14:30:30:0.467:2	0/1:19,13:27:32:0.406:2	./.	0/1:24,30:29:54:0.556:2	0/1:35,26:30:61:0.426:2	./.	0/1:0,70:30:70:1.00:2	./.	./.	./.	./.
chr7	73949411	rs59656369	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,31:30:56:0.554:2	0/1:24,10:28:34:0.294:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	73961515	rs200723964	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,4:29:14:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	73969541	rs2301895	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,15:30:25:0.600:2	0/1:9,7:29:16:0.438:2	./.	0/1:15,15:31:30:0.500:2	0/1:22,23:29:45:0.511:2	./.	0/1:0,49:29:49:1.00:2	./.	./.	./.	./.
chr7	74152376	rs201879322	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:158,29:29:187:0.155:2	0/1:160,26:30:187:0.140:2	0/1:161,28:30:189:0.148:2	0/1:163,23:29:186:0.124:2	./.	./.	./.	0/1:162,34:29:197:0.173:2
chr7	74159167	rs201985028	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,3:31:15:0.200:2	./.	./.	0/1:174,18:33:192:0.094:2	0/1:106,19:32:125:0.152:2	./.	0/1:161,31:34:192:0.161:2	./.	0/1:169,20:32:189:0.106:2
chr7	74163774	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:38,9:33:48:0.191:2	0/1:18,4:32:22:0.182:2	./.	0/1:34,7:33:41:0.171:2	./.	./.	./.	0/1:30,8:32:38:0.211:2	./.	./.	0/1:61,12:32:73:0.164:2
chr7	74167490	rs373607978	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:130,63:31:193:0.326:2	0/1:109,66:32:175:0.377:2	./.	0/1:135,46:32:181:0.254:2	0/1:153,33:31:186:0.177:2	0/1:148,31:30:179:0.173:2	./.	0/1:134,64:31:198:0.323:2	0/1:164,34:33:198:0.172:2	0/1:129,70:31:199:0.352:2	0/1:158,37:32:195:0.190:2
chr7	74168251	rs200523538	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,15:30:77:0.195:2	0/1:87,12:31:99:0.121:2	0/1:58,13:31:71:0.183:2	./.	./.	0/1:91,16:32:107:0.150:2	0/1:107,32:32:139:0.230:2
chr7	74173181	rs142626199	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,10:32:28:0.357:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	74173182	rs2069301	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:152,43:31:195:0.221:2	0/1:150,33:32:183:0.180:2	./.	0/1:143,54:31:197:0.274:2	./.	./.	./.	0/1:161,35:32:196:0.179:2	./.	./.	0/1:140,52:32:192:0.271:2
chr7	74193642	rs201802880	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:94,18:31:112:0.161:2	0/1:57,19:31:76:0.250:2	./.	0/1:138,20:31:160:0.127:2	0/1:177,14:30:193:0.073:2	0/1:131,35:31:166:0.211:2	./.	0/1:167,26:30:193:0.135:2	0/1:131,17:32:148:0.115:2	0/1:130,55:31:185:0.297:2	./.
chr7	74193668	rs17295741	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,57:32:121:0.471:2	0/1:50,32:31:82:0.390:2	0/1:16,7:31:23:0.304:2	0/1:3,172:32:175:0.983:2	0/1:25,155:32:180:0.861:2	0/1:129,64:31:193:0.332:2	0/1:80,91:31:171:0.532:2	0/1:38,153:31:192:0.801:2	0/1:96,83:32:179:0.464:2	0/1:73,114:31:187:0.610:2	0/1:1,107:32:108:0.991:2
chr7	74195192	.	G	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:37,10:26:47:0.213:2	0/1:28,6:27:34:0.176:2	./.	0/1:36,14:28:50:0.280:2	./.	./.	./.	0/1:43,11:24:54:0.204:2	./.	./.	0/1:46,11:26:57:0.193:2
chr7	74211446	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,82:33:194:0.423:2
chr7	74212036	rs707394	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:132,54:33:186:0.290:2	./.	./.	./.	./.	0/1:125,66:32:192:0.346:2	0/1:105,77:32:182:0.423:2
chr7	74212048	rs707395	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:104,83:32:187:0.444:2	0/1:99,96:32:195:0.492:2	0/1:23,22:32:45:0.489:2	./.	0/1:133,63:31:196:0.321:2	./.	./.	./.	./.	0/1:128,70:31:198:0.354:2	0/1:116,71:31:187:0.380:2
chr7	74212311	rs187868539	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:30:77:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,13:29:13:1.00:2	0/1:0,131:30:131:1.00:2	0/1:2,73:29:75:0.973:2	0/1:0,130:30:130:1.00:2	0/1:2,91:30:93:0.978:2	0/1:1,131:30:132:0.992:2	0/1:1,122:31:123:0.992:2	0/1:0,49:31:49:1.00:2	0/1:0,77:30:78:1.00:2
chr7	74212351	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:146,43:31:189:0.228:2	0/1:79,22:31:101:0.218:2	0/1:28,10:30:38:0.263:2	./.	0/1:163,31:30:194:0.160:2	./.	./.	./.	./.	0/1:158,34:31:192:0.177:2	0/1:156,33:31:189:0.175:2
chr7	74212352	rs200619072	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:152,43:32:195:0.221:2	0/1:85,22:32:107:0.206:2	0/1:30,10:32:40:0.250:2	./.	0/1:167,31:31:198:0.157:2	./.	./.	./.	./.	0/1:159,36:32:195:0.185:2	0/1:162,30:32:192:0.156:2
chr7	74212518	rs147678344	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,69:31:197:0.350:2	./.	./.	./.	./.	./.
chr7	74217714	rs202074389	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:151,41:29:192:0.214:2	0/1:152,37:29:189:0.196:2	0/1:39,24:29:63:0.381:2	0/1:134,60:29:194:0.309:2	0/1:137,55:29:192:0.286:2	0/1:137,54:30:192:0.283:2	0/1:143,54:29:197:0.274:2	0/1:148,47:29:195:0.241:2	0/1:136,56:30:192:0.292:2	0/1:135,58:30:193:0.301:2	0/1:151,39:29:190:0.205:2
chr7	74223500	rs201693067	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,32:31:196:0.163:2	./.	./.	./.	./.	./.
chr7	74237250	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,35:33:192:0.182:2	./.
chr7	74239517	rs201874591	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,27:32:138:0.196:2	./.	0/1:137,57:33:194:0.294:2	./.	./.	./.	./.	0/1:140,53:33:193:0.275:2	0/1:151,38:33:189:0.201:2
chr7	74299904	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:156,30:32:186:0.161:2	./.	./.	./.	./.	./.	./.	./.
chr7	74300255	.	G	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:170,12:31:182:0.066:2	0/1:185,11:30:196:0.056:2	./.	./.	0/1:189,7:30:196:0.036:2	0/1:191,5:30:196:0.026:2	./.	0/1:185,7:29:193:0.036:2	0/1:189,5:31:194:0.026:2	0/1:172,15:30:187:0.080:2	./.
chr7	74300569	rs201662874	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:171,19:31:190:0.100:2	0/1:160,33:32:193:0.171:2	./.	./.	0/1:168,28:31:196:0.143:2	0/1:166,30:31:196:0.153:2	./.	0/1:165,32:32:197:0.162:2	0/1:153,32:32:185:0.173:2	0/1:95,97:31:192:0.505:2	./.
chr7	74301198	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:187,12:32:199:0.060:2	./.	./.	./.	./.	./.	./.
chr7	74310335	rs192211431	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,6:32:8:0.750:2
chr7	74422187	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:154,12:32:166:0.072:2	0/1:104,5:33:109:0.046:2	./.	./.	0/1:194,5:32:199:0.025:2	./.	0/1:192,5:30:197:0.025:2	0/1:192,6:32:198:0.030:2	0/1:193,5:30:198:0.025:2	0/1:186,9:32:196:0.046:2	0/1:188,4:33:194:0.021:2
chr7	74431779	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,6:32:96:0.063:2
chr7	74431797	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,7:26:115:0.061:2
chr7	74431860	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:32:184:0.022:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	74431867	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	0/1:179,5:33:184:0.027:2	./.	./.
chr7	74536756	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,21:32:115:0.183:2	./.	0/1:143,40:33:183:0.219:2	./.	./.	./.	./.	0/1:134,40:34:174:0.230:2	0/1:129,41:32:170:0.241:2
chr7	74539022	rs140040812	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,40:32:187:0.214:2	./.
chr7	74552602	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,29:31:186:0.156:2	./.	./.	./.	./.	./.
chr7	74558397	rs370642824	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:146,37:30:183:0.202:2	0/1:146,37:30:184:0.202:2	0/1:46,9:30:55:0.164:2	0/1:165,31:29:196:0.158:2	0/1:155,29:30:184:0.158:2	0/1:148,40:30:190:0.213:2	0/1:135,40:30:175:0.229:2	0/1:144,39:29:183:0.213:2	0/1:154,43:30:197:0.218:2	0/1:156,33:29:189:0.175:2	0/1:152,37:29:191:0.196:2
chr7	74563586	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,15:32:197:0.076:2	./.	./.	./.	./.	./.
chr7	74563686	rs202079108	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:181,10:31:191:0.052:2	0/1:189,6:32:196:0.031:2	0/1:115,4:31:119:0.034:2	./.	0/1:184,10:32:194:0.052:2	./.	./.	./.	./.	0/1:187,8:31:195:0.041:2	0/1:180,6:32:186:0.032:2
chr7	74563752	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:185,7:32:192:0.036:2	0/1:183,14:31:197:0.071:2	./.	0/1:176,22:31:198:0.111:2	./.	0/1:158,22:30:180:0.122:2	0/1:163,16:31:179:0.089:2	0/1:169,14:29:183:0.077:2	0/1:176,16:33:192:0.083:2	0/1:188,8:33:196:0.041:2	./.
chr7	74563753	rs202156190	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:159,31:31:190:0.163:2	0/1:166,32:32:198:0.162:2	0/1:38,7:31:45:0.156:2	./.	0/1:165,31:32:196:0.158:2	./.	./.	./.	./.	0/1:162,33:32:195:0.169:2	0/1:175,18:32:194:0.093:2
chr7	74564658	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,10:32:194:0.052:2
chr7	74573750	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:34:189:0.021:2	./.	./.	./.
chr7	74578192	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:174,7:27:181:0.039:2	./.	./.	0/1:187,5:30:192:0.026:2	./.	./.	0/1:183,7:28:190:0.037:2	0/1:188,4:32:192:0.021:2	./.	./.	0/1:170,9:31:181:0.050:2
chr7	74580918	.	C	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:160,22:29:182:0.121:2	0/1:150,22:27:172:0.128:2	./.	0/1:129,47:29:176:0.267:2	./.	./.	./.	0/1:170,25:26:195:0.128:2	./.	./.	0/1:149,20:27:169:0.118:2
chr7	74582350	rs201725627	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,6:35:7:0.857:2	0/1:0,7:32:7:1.00:2	./.	0/1:1,22:32:23:0.957:2	./.	./.	./.	0/1:1,24:32:25:0.960:2	./.	./.	0/1:58,6:32:64:0.094:2
chr7	74582392	rs199966566	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,37:28:94:0.394:2	0/1:187,12:29:199:0.060:2	./.	0/1:189,4:33:193:0.021:2	0/1:84,6:29:90:0.067:2	./.	0/1:0,10:28:10:1.00:2	0/1:94,5:29:99:0.051:2
chr7	74582442	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:172,14:26:186:0.075:2	./.	./.	./.	./.	./.	./.
chr7	74582468	rs201210150	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:52,4:31:56:0.071:2	0/1:37,4:29:41:0.098:2	./.	0/1:142,12:26:155:0.078:2	0/1:130,28:29:158:0.177:2	0/1:82,12:31:94:0.128:2	./.	0/1:101,22:29:123:0.179:2	0/1:145,6:29:151:0.040:2	0/1:5,18:28:23:0.783:2	0/1:107,12:27:119:0.101:2
chr7	74587642	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,21:32:184:0.115:2	0/1:132,24:33:156:0.154:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	74814541	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.
chr7	74993964	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:180,17:30:197:0.086:2	./.	./.	./.	./.	./.	./.
chr7	74994593	rs200156902	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:156,31:32:187:0.166:2	0/1:162,28:32:190:0.147:2	./.	./.	0/1:164,32:32:196:0.163:2	0/1:138,51:31:189:0.270:2	./.	0/1:158,31:31:189:0.164:2	0/1:159,28:32:187:0.150:2	0/1:97,90:31:187:0.481:2	./.
chr7	74994854	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:34:196:0.020:2	./.
chr7	74994907	.	C	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:171,10:30:181:0.055:2	./.	./.	0/1:184,8:30:192:0.042:2	0/1:187,8:30:195:0.041:2	./.	0/1:184,14:30:198:0.071:2	./.	0/1:167,29:30:196:0.148:2	./.
chr7	74995699	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,42:32:184:0.228:2	0/1:133,32:31:166:0.194:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	75028240	rs116984258	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:154,6:32:160:0.038:2	./.	./.	0/1:174,6:31:180:0.033:2	0/1:180,7:31:187:0.037:2	0/1:182,5:32:187:0.027:2	./.	0/1:174,15:32:189:0.079:2	./.	./.	0/1:166,6:33:172:0.035:2
chr7	75028241	rs117463977	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:155,6:32:161:0.037:2	./.	./.	0/1:174,6:27:180:0.033:2	0/1:182,7:29:189:0.037:2	0/1:181,5:31:186:0.027:2	./.	0/1:174,15:31:189:0.079:2	./.	./.	0/1:165,6:30:171:0.035:2
chr7	75028469	rs142958137	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,6:31:6:1.00:2	0/1:0,2:31:2:1.00:2	./.	0/1:3,5:32:9:0.625:2	./.	./.	./.	0/1:0,6:29:6:1.00:2	0/1:138,5:31:143:0.035:2	0/1:1,2:31:3:0.667:2	./.
chr7	75028599	rs199603365	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,22:31:118:0.186:2	0/1:51,17:31:68:0.250:2	0/1:47,16:32:63:0.254:2
chr7	75033005	rs200694955	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,40:32:194:0.206:2	0/1:138,57:32:195:0.292:2	./.
chr7	75033015	rs199982097	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:164,32:30:196:0.163:2	0/1:141,58:31:199:0.291:2	./.	./.	./.	./.	./.	./.
chr7	75034288	rs201374916	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:180,7:32:187:0.037:2	./.	./.	./.	./.	./.	./.
chr7	75045694	rs7050	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,62:30:138:0.449:2	0/1:94,87:30:181:0.481:2	./.	./.	./.	./.	./.	./.
chr7	75048607	rs1128185	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:128:0.031:2	./.	./.	./.	./.
chr7	75048611	rs1128184	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:31:133:0.030:2	./.	./.	./.	./.
chr7	75048643	rs1045028	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,8:31:165:0.048:2	./.	./.	./.	./.
chr7	75048701	rs365436	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:164,4:32:168:0.024:2	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.
chr7	75050891	rs146536842	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:137,4:31:141:0.028:2	./.	./.	./.	./.	./.	0/1:182,5:29:187:0.027:2	./.	./.	./.	./.
chr7	75050957	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:166,23:28:189:0.122:2	0/1:140,16:31:156:0.103:2	0/1:29,9:31:38:0.237:2	0/1:167,17:30:185:0.092:2	0/1:172,21:30:194:0.109:2	0/1:181,9:31:190:0.047:2	0/1:160,29:30:189:0.153:2	./.	0/1:158,27:30:185:0.146:2	0/1:169,24:30:193:0.124:2	0/1:171,13:29:184:0.071:2
chr7	75051324	rs117499978	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:30,40:28:70:0.571:2	0/1:24,24:27:48:0.500:2	./.	0/1:48,47:27:95:0.495:2	./.	./.	./.	0/1:51,39:29:90:0.433:2	./.	./.	0/1:27,27:28:54:0.500:2
chr7	75051368	rs398003	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:16,21:30:38:0.568:2	0/1:12,9:33:21:0.429:2	./.	0/1:17,25:32:42:0.595:2	./.	./.	./.	0/1:16,14:28:30:0.467:2	./.	./.	0/1:6,11:30:17:0.647:2
chr7	75051375	rs398016	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,12:27:36:0.333:2	0/1:8,8:27:16:0.500:2	0/1:1,2:31:3:0.667:2	0/1:25,9:26:34:0.265:2	0/1:1,23:27:24:0.958:2	0/1:31,8:24:39:0.205:2	0/1:0,10:25:10:1.00:2	0/1:10,8:29:18:0.444:2	./.	0/1:0,18:25:18:1.00:2	0/1:8,5:27:13:0.385:2
chr7	75051419	rs201211942	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,9:30:30:0.300:2	0/1:21,3:31:24:0.125:2	./.	0/1:44,15:29:59:0.254:2	0/1:29,4:26:33:0.121:2	0/1:27,10:29:37:0.270:2	0/1:23,16:28:39:0.410:2	0/1:34,10:27:44:0.227:2	0/1:29,9:29:38:0.237:2	0/1:26,7:30:33:0.212:2	./.
chr7	75051439	rs111245070	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:39,7:32:46:0.152:2	0/1:24,4:31:28:0.143:2	./.	0/1:89,7:30:96:0.073:2	./.	0/1:50,10:31:60:0.167:2	0/1:58,24:31:82:0.293:2	0/1:69,11:31:80:0.138:2	./.	./.	0/1:46,8:29:54:0.148:2
chr7	75051540	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,44:32:132:0.333:2	0/1:58,23:32:81:0.284:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	75051619	rs199647728	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,5:26:111:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	75051826	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:163,20:31:183:0.109:2	./.	./.	./.	./.	./.	./.	./.
chr7	75051866	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,11:17:166:0.066:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	75052068	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:135,6:27:141:0.043:2	./.	0/1:161,6:29:168:0.036:2	./.	./.	./.	./.	./.	./.	0/1:170,7:29:179:0.040:2
chr7	75052079	.	T	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:175,6:30:181:0.033:2	0/1:122,8:28:130:0.062:2	./.	0/1:132,16:30:150:0.108:2	./.	./.	./.	./.	./.	./.	./.
chr7	75052102	rs202090574	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:169,17:31:186:0.091:2	0/1:122,15:31:138:0.109:2	./.	0/1:127,60:30:187:0.321:2	0/1:171,27:31:198:0.136:2	./.	./.	0/1:174,17:32:191:0.089:2	./.	./.	0/1:170,17:32:187:0.091:2
chr7	75052281	rs138045165	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,5:34:67:0.075:2	./.	./.
chr7	75052435	rs201968317	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,4:31:99:0.041:2	./.	./.	./.	0/1:131,4:31:135:0.030:2	0/1:135,6:33:141:0.043:2	0/1:76,9:29:86:0.106:2	./.
chr7	75053499	rs113744930	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,92:31:193:0.477:2	0/1:83,87:31:170:0.512:2	./.	./.	./.	./.	./.	./.
chr7	75054409	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,24:32:200:0.120:2	./.	./.	./.	./.
chr7	75070334	rs182076484	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,11:30:22:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	75145495	rs75799888	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:149,4:32:153:0.026:2	0/1:0,40:31:40:1.00:2	./.	./.	0/1:120,53:30:174:0.306:2	0/1:9,148:31:157:0.943:2	./.	0/1:5,181:31:186:0.973:2	./.	0/1:96,79:31:176:0.451:2
chr7	75172270	rs1167794	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:33,29:32:62:0.468:2	0/1:23,20:31:43:0.465:2	./.	./.	0/1:37,32:31:69:0.464:2	0/1:2,98:31:100:0.980:2	./.	0/1:70,40:31:110:0.364:2	./.	0/1:45,31:31:76:0.408:2	./.
chr7	75176300	rs1167801	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,44:33:62:0.710:2	0/1:15,12:32:27:0.444:2	./.	./.	0/1:41,40:32:81:0.494:2	0/1:1,83:32:84:0.988:2	./.	0/1:54,44:32:98:0.449:2	./.	0/1:53,29:32:82:0.354:2	./.
chr7	75211414	rs237238	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,44:28:82:0.537:2	./.	0/1:46,26:28:72:0.361:2	./.
chr7	75228483	rs41281695	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,39:31:80:0.488:2	./.	./.	./.	./.	0/1:47,35:31:82:0.427:2
chr7	75401418	rs2240478	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,41:31:88:0.466:2	./.	./.	./.	./.	./.	./.	0/1:31,28:31:59:0.475:2
chr7	75442723	rs11465293	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,13:30:33:0.394:2	./.	./.	./.	./.	./.
chr7	75442730	rs2302006	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,12:30:30:0.400:2	./.	0/1:9,13:31:22:0.591:2	./.	./.	0/1:1,17:32:18:0.944:2	./.
chr7	75513062	rs42183	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:29:69:1.00:2	0/1:0,55:29:55:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,100:29:100:1.00:2	0/1:0,181:29:181:1.00:2	0/1:1,113:30:114:0.991:2	0/1:0,151:30:151:1.00:2	0/1:0,143:29:143:1.00:2	0/1:0,115:30:116:1.00:2	0/1:0,85:30:85:1.00:2	0/1:0,74:28:75:1.00:2
chr7	75597545	rs10954724	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,4:31:20:0.200:2	./.	./.	./.	./.	0/1:22,13:28:35:0.371:2	0/1:14,17:29:31:0.548:2	0/1:15,12:31:27:0.444:2	./.	0/1:12,15:32:28:0.556:2	./.
chr7	75609677	rs1135612	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,44:29:93:0.473:2	./.	0/1:25,24:27:49:0.490:2	./.
chr7	75610876	rs17853284	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,23:32:57:0.404:2	./.	./.	./.	./.	./.	./.	./.
chr7	75614391	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,5:30:11:0.455:2	./.
chr7	75614953	rs2228104	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,17:26:17:1.00:2	0/1:0,18:28:18:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,57:29:57:1.00:2	0/1:0,61:27:61:1.00:2	0/1:36,24:28:60:0.400:2	0/1:1,41:29:42:0.976:2	0/1:2,52:29:54:0.963:2	0/1:1,41:29:42:0.976:2	0/1:0,40:29:40:1.00:2	0/1:0,25:27:25:1.00:2
chr7	75615006	rs1057868	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,8:31:14:0.571:2	0/1:5,3:24:8:0.375:2	./.	0/1:9,7:26:16:0.438:2	0/1:12,11:30:23:0.478:2	./.	0/1:1,4:32:5:0.800:2	0/1:16,8:32:24:0.333:2	0/1:3,15:32:18:0.833:2	./.	0/1:0,7:31:7:1.00:2
chr7	75615287	rs1057870	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,15:26:34:0.455:2	0/1:27,31:30:59:0.534:2	0/1:19,19:29:39:0.500:2	0/1:14,21:32:35:0.600:2	./.	0/1:15,18:32:33:0.545:2	0/1:11,7:29:18:0.389:2	./.
chr7	75616577	rs8509	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,40:31:72:0.556:2	0/1:44,29:30:73:0.397:2	./.	./.	./.	0/1:34,20:32:54:0.370:2	./.	0/1:30,37:30:67:0.552:2
chr7	75616676	rs200292575	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,8:17:51:0.157:2
chr7	75617223	rs147613710	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,19:32:39:0.487:2	0/1:8,11:32:19:0.579:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	75621827	rs4732519	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,55:33:55:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,9:33:9:1.00:2	./.	0/1:1,67:33:68:0.985:2	0/1:0,52:32:52:1.00:2	0/1:0,109:33:109:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,65:33:65:1.00:2	0/1:0,53:33:53:1.00:2
chr7	75623893	rs114462308	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,9:30:11:0.818:2	0/1:2,7:29:9:0.778:2	./.	./.	./.	0/1:1,12:31:13:0.923:2	./.	./.
chr7	75630274	rs8565	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,42:33:87:0.483:2	0/1:20,27:32:47:0.574:2	0/1:7,8:34:15:0.533:2	0/1:62,53:34:115:0.461:2	0/1:83,81:32:164:0.494:2	0/1:2,95:33:97:0.979:2	0/1:0,159:33:159:1.00:2	0/1:3,179:32:182:0.984:2	0/1:66,67:34:133:0.504:2	0/1:0,112:33:112:1.00:2	./.
chr7	75634687	rs1044484	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,52:32:132:0.397:2	./.
chr7	75659815	rs1044483	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,48:30:108:0.444:2	0/1:48,35:29:83:0.422:2	0/1:7,6:30:13:0.462:2	0/1:97,72:29:169:0.426:2	0/1:59,39:30:98:0.398:2	0/1:63,60:29:123:0.488:2	0/1:1,117:29:118:0.992:2	0/1:2,145:29:147:0.986:2	0/1:102,74:30:177:0.420:2	0/1:1,133:30:134:0.993:2	./.
chr7	75677504	rs6720	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,3:30:6:0.500:2	0/1:2,4:31:6:0.667:2	0/1:0,2:31:2:1.00:2	0/1:1,4:31:5:0.800:2	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2
chr7	75890228	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,5:27:85:0.059:2	./.	./.	./.	./.	./.	./.	./.
chr7	75959188	rs2072435	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:32:11:1.00:2	./.	./.	./.	./.	./.	./.	0/1:35,41:33:77:0.539:2	./.
chr7	76019590	rs10227141	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,8:32:12:0.667:2
chr7	76022731	rs142875026	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:27:5:0.600:2
chr7	76029640	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,28:30:126:0.222:2	./.	./.	./.	./.	./.	./.
chr7	76029695	rs4728712	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:11,25:32:36:0.694:2	0/1:8,17:31:25:0.680:2	./.	./.	./.	./.	./.	0/1:7,19:31:26:0.731:2	0/1:10,18:31:28:0.643:2	0/1:6,20:31:26:0.769:2	./.
chr7	76029760	rs73361550	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:32:7:0.429:2
chr7	76054372	rs2286428	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,12:29:29:0.414:2	0/1:17,12:29:29:0.414:2	0/1:14,7:29:21:0.333:2	./.	./.	0/1:14,17:31:31:0.548:2	./.	0/1:16,14:30:30:0.467:2
chr7	76069629	rs73363163	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:131,64:33:195:0.328:2	0/1:149,47:33:196:0.240:2	0/1:134,60:33:195:0.309:2	0/1:153,42:34:195:0.215:2	0/1:107,88:33:195:0.451:2	0/1:145,49:35:194:0.253:2	./.	0/1:149,41:33:190:0.216:2
chr7	76069811	rs2906999	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:54,61:32:115:0.530:2	0/1:36,32:31:68:0.471:2	./.	0/1:90,53:32:144:0.371:2	0/1:82,64:31:146:0.438:2	0/1:65,67:31:132:0.508:2	0/1:85,72:32:157:0.459:2	0/1:0,122:32:122:1.00:2	0/1:0,95:32:95:1.00:2	0/1:55,49:31:104:0.471:2	0/1:69,87:31:156:0.558:2
chr7	76069812	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,6:29:116:0.052:2	0/1:64,4:31:68:0.059:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	76069906	rs141493396	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,37:31:97:0.381:2	0/1:22,30:29:52:0.577:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	76071211	rs200481427	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:164,26:28:191:0.137:2	0/1:162,26:30:188:0.138:2	./.	0/1:148,45:29:193:0.233:2	0/1:154,44:29:198:0.222:2	0/1:164,28:29:192:0.146:2	0/1:156,39:30:196:0.200:2	0/1:151,42:29:193:0.218:2	0/1:126,70:31:196:0.357:2	0/1:131,61:30:192:0.318:2	0/1:126,68:29:195:0.351:2
chr7	76071228	rs143649134	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,48:32:195:0.246:2	./.
chr7	76071272	rs201251126	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,47:32:192:0.245:2
chr7	76109831	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,4:31:77:0.052:2	./.	./.	./.	./.	0/1:90,4:32:94:0.043:2	./.
chr7	76111831	rs150857694	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,80:28:186:0.430:2
chr7	76111835	rs4236506	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:79,66:32:145:0.455:2	0/1:45,35:32:80:0.438:2	./.	./.	./.	./.	0/1:185,4:33:189:0.021:2	0/1:100,94:32:194:0.485:2	0/1:86,104:33:190:0.547:2	0/1:78,81:31:159:0.509:2	./.
chr7	76111938	rs12534498	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:31:15:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	76111994	rs1638075	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,79:30:152:0.520:2	0/1:98,94:29:192:0.490:2	0/1:90,85:30:176:0.486:2	0/1:110,79:29:189:0.418:2	0/1:117,64:30:181:0.354:2	0/1:73,90:30:163:0.552:2	./.	0/1:56,71:30:127:0.559:2
chr7	76112060	rs1638074	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,54:30:96:0.563:2	0/1:36,15:31:51:0.294:2	./.	0/1:52,57:30:109:0.523:2	0/1:63,67:30:130:0.515:2	0/1:54,63:29:117:0.538:2	0/1:47,45:29:92:0.489:2	0/1:0,111:30:111:1.00:2	0/1:0,117:31:117:1.00:2	0/1:37,59:29:96:0.615:2	0/1:0,78:30:78:1.00:2
chr7	76112183	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,9:32:92:0.098:2	0/1:72,20:29:92:0.217:2	0/1:69,13:29:82:0.159:2	./.	0/1:75,15:31:90:0.167:2	0/1:53,6:32:59:0.102:2	0/1:73,20:30:93:0.215:2	0/1:50,18:30:68:0.265:2
chr7	76112219	rs144914725	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,26:30:110:0.236:2
chr7	76112249	rs147779783	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:25,5:34:30:0.167:2	0/1:155,35:32:190:0.184:2	0/1:133,58:32:192:0.304:2	0/1:155,33:32:188:0.176:2	./.	0/1:158,30:32:188:0.160:2	./.	0/1:146,27:31:173:0.156:2	0/1:80,68:32:148:0.459:2
chr7	76112299	rs145151450	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,65:32:154:0.425:2	0/1:95,70:33:165:0.424:2	./.	./.	./.
chr7	76112348	.	C	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,5:32:94:0.053:2	0/1:58,7:32:65:0.108:2	0/1:80,5:30:85:0.059:2	./.	./.	./.	0/1:59,13:32:72:0.181:2	0/1:57,5:31:62:0.081:2
chr7	76121509	rs148279131	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:78,25:29:103:0.243:2	0/1:98,17:29:115:0.148:2	./.	./.	./.	./.	./.	0/1:85,28:26:114:0.248:2	0/1:52,35:29:89:0.402:2	0/1:50,35:26:85:0.412:2	./.
chr7	76126737	rs145964625	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,10:32:56:0.179:2	./.	./.	./.	0/1:148,44:32:192:0.229:2	0/1:147,40:32:187:0.214:2	0/1:107,75:33:182:0.412:2	0/1:143,51:32:194:0.263:2	0/1:141,43:33:184:0.234:2
chr7	76129758	rs147644708	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,8:31:54:0.148:2	0/1:32,5:29:37:0.135:2	./.	0/1:85,14:31:99:0.141:2	0/1:46,9:31:55:0.164:2	0/1:91,7:32:98:0.071:2	0/1:72,9:32:81:0.111:2	0/1:50,25:31:75:0.333:2	0/1:40,30:33:70:0.429:2	0/1:53,27:31:80:0.338:2	0/1:46,28:31:74:0.378:2
chr7	76131645	rs6979487	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,74:28:75:0.987:2	0/1:0,42:28:42:1.00:2	0/1:0,13:29:13:1.00:2	0/1:94,55:27:149:0.369:2	0/1:136,40:27:177:0.227:2	0/1:95,51:27:146:0.349:2	0/1:153,37:28:190:0.195:2	0/1:116,57:28:173:0.329:2	0/1:104,63:29:167:0.377:2	0/1:89,38:29:127:0.299:2	0/1:66,44:28:110:0.400:2
chr7	76131650	rs6958774	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,31:32:77:0.403:2	0/1:33,16:32:49:0.327:2	0/1:0,13:31:13:1.00:2	0/1:103,54:31:157:0.344:2	0/1:125,50:32:175:0.286:2	0/1:92,52:31:144:0.361:2	0/1:159,34:32:193:0.176:2	./.	./.	./.	./.
chr7	76131695	rs4728775	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,104:33:105:0.990:2	0/1:0,62:32:63:1.00:2	0/1:0,14:32:14:1.00:2	0/1:107,69:33:177:0.392:2	0/1:103,73:33:176:0.415:2	0/1:98,85:33:183:0.464:2	0/1:135,49:34:184:0.266:2	0/1:121,75:32:196:0.383:2	0/1:108,82:34:190:0.432:2	0/1:87,46:33:133:0.346:2	0/1:75,58:32:134:0.436:2
chr7	76132874	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,3:35:86:0.035:2	./.	./.	./.	./.
chr7	76132898	rs17855260	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,18:33:45:0.400:2	0/1:27,12:33:39:0.308:2	0/1:0,7:32:7:1.00:2	0/1:48,35:32:83:0.422:2	0/1:40,21:32:61:0.344:2	0/1:56,37:31:93:0.398:2	0/1:37,29:32:66:0.439:2	./.	./.	./.	./.
chr7	76133701	rs367647576	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,9:28:40:0.225:2	./.
chr7	76140182	rs2462264	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:73,8:30:81:0.099:2	0/1:61,3:34:64:0.047:2	./.	./.	./.	./.	0/1:68,4:29:72:0.056:2	./.	./.	./.	./.
chr7	76140186	rs12666503	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	76140303	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,12:32:196:0.061:2	./.	./.	./.
chr7	76140342	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	0/1:180,11:32:191:0.058:2	0/1:187,7:31:194:0.036:2	./.
chr7	76144455	rs1799125	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:29:19:1.00:2	0/1:0,13:28:13:1.00:2	0/1:0,4:28:4:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,22:27:22:1.00:2	0/1:0,31:28:31:1.00:2	0/1:0,21:28:21:1.00:2	0/1:0,28:28:28:1.00:2	0/1:0,23:28:23:1.00:2	0/1:0,20:28:20:1.00:2	0/1:0,9:28:9:1.00:2
chr7	76144456	rs137995680	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,10:31:19:0.526:2	./.	./.	./.	./.	./.	./.	./.
chr7	76144483	rs1636632	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,10:27:22:0.455:2	0/1:5,4:30:9:0.444:2	0/1:0,3:27:3:1.00:2	0/1:17,8:27:25:0.320:2	0/1:12,4:30:16:0.250:2	0/1:9,8:28:17:0.471:2	0/1:6,10:30:16:0.625:2	./.	./.	./.	./.
chr7	76144560	rs1799126	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:30:41:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,67:30:67:1.00:2	0/1:0,56:29:57:1.00:2	0/1:0,60:28:60:1.00:2	0/1:0,25:29:25:1.00:2	0/1:0,72:28:72:1.00:2	0/1:0,58:30:58:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,37:29:37:1.00:2
chr7	76239480	rs200882024	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:140,47:30:187:0.251:2	0/1:138,56:31:194:0.289:2	./.	0/1:140,56:31:196:0.286:2	0/1:142,55:30:197:0.279:2	0/1:142,49:31:191:0.257:2	0/1:146,43:31:189:0.228:2	0/1:151,43:31:195:0.222:2	0/1:80,114:31:194:0.588:2	0/1:86,105:30:191:0.550:2	0/1:76,115:31:192:0.602:2
chr7	76240888	rs1134609	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:60,53:29:113:0.469:2	0/1:60,36:28:96:0.375:2	./.	0/1:59,59:30:118:0.500:2	0/1:76,47:29:123:0.382:2	0/1:77,53:29:130:0.408:2	0/1:62,49:30:111:0.441:2	0/1:84,68:30:152:0.447:2	0/1:1,129:30:130:0.992:2	0/1:0,104:30:104:1.00:2	0/1:1,91:29:92:0.989:2
chr7	76241068	rs187692176	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:180,17:32:197:0.086:2	0/1:181,19:32:200:0.095:2	0/1:183,14:32:197:0.071:2	0/1:180,16:31:196:0.082:2	0/1:184,14:32:198:0.071:2	0/1:185,12:34:197:0.061:2	./.	0/1:160,36:31:196:0.184:2
chr7	76254928	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,6:34:161:0.037:2	./.	./.	./.	./.	./.
chr7	76254955	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,8:25:170:0.047:2	./.	./.	./.	./.	./.
chr7	76255328	rs199608185	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:155,13:33:168:0.077:2	0/1:99,10:32:109:0.092:2	./.	./.	0/1:184,9:31:193:0.047:2	0/1:181,5:32:186:0.027:2	./.	0/1:160,14:33:174:0.080:2	./.	0/1:167,12:31:179:0.067:2	0/1:168,12:30:180:0.067:2
chr7	76255360	rs200164764	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,5:33:160:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	76828953	rs2075761	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,55:31:99:0.556:2	./.	./.	./.	./.	./.
chr7	76871086	rs74783981	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,45:31:97:0.464:2	./.	./.	./.	./.
chr7	76871113	rs17230060	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,39:29:94:0.415:2	0/1:59,50:29:109:0.459:2	./.	0/1:76,79:30:155:0.510:2	./.	0/1:55,46:28:101:0.455:2	0/1:65,76:29:141:0.539:2
chr7	76885769	rs3108428	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:32:76:1.00:2	0/1:0,51:33:51:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,107:33:107:1.00:2	0/1:31,32:32:63:0.508:2	0/1:45,45:32:90:0.500:2	0/1:0,74:33:74:1.00:2	0/1:41,46:33:87:0.529:2	0/1:0,88:34:88:1.00:2	0/1:34,39:33:73:0.534:2	0/1:48,53:33:101:0.525:2
chr7	76889524	rs61746087	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,57:32:110:0.518:2	./.	./.	./.	./.	./.
chr7	76912039	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,4:30:79:0.052:2	./.	./.	./.	./.	./.	./.	./.
chr7	76916819	rs3763402	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,47:32:143:0.329:2	./.	./.	./.	./.
chr7	76922490	rs17151219	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,14:32:44:0.318:2	./.	./.	./.	./.
chr7	76950699	rs17151692	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,67:32:166:0.404:2	./.	0/1:1,138:33:139:0.993:2	./.	./.
chr7	76958674	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:168,8:25:176:0.045:2	./.	./.	./.	0/1:187,9:25:196:0.046:2	./.	./.	./.
chr7	76958677	.	A	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:166,9:28:175:0.051:2	./.	./.	0/1:167,5:28:172:0.029:2	0/1:186,9:29:196:0.046:2	./.	./.	./.
chr7	76958725	rs140075923	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,46:31:110:0.418:2	./.	./.	./.	./.	./.
chr7	76984572	rs2037753	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,72:32:72:1.00:2	./.	0/1:0,64:33:64:1.00:2	./.	./.
chr7	76990178	rs4727366	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,57:33:161:0.354:2	./.	0/1:1,157:33:158:0.994:2	./.	./.
chr7	76991935	rs1527263	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,21:32:55:0.382:2	./.	0/1:0,124:32:124:1.00:2	./.	./.
chr7	77033937	rs10238020	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,25:33:54:0.463:2	./.	./.	./.	./.
chr7	77035392	rs6949654	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:30:80:1.00:2	0/1:0,44:29:44:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,65:30:65:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,84:30:84:1.00:2	0/1:0,58:29:58:1.00:2	0/1:45,52:30:97:0.536:2	0/1:0,99:31:99:1.00:2	0/1:0,73:30:73:1.00:2	0/1:80,78:30:158:0.494:2
chr7	77200470	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:30:102:0.039:2	./.	./.	./.	./.
chr7	77240069	rs2302473	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,4:32:30:0.133:2	0/1:19,25:31:44:0.568:2	./.	./.	0/1:22,26:33:48:0.542:2	./.	./.
chr7	77247821	rs9640663	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,6:33:6:1.00:2	0/1:0,6:32:6:1.00:2	./.	0/1:4,4:31:8:0.500:2	0/1:0,17:32:17:1.00:2	0/1:0,15:31:15:1.00:2	0/1:5,4:32:9:0.444:2	0/1:0,18:32:18:1.00:2	0/1:9,4:33:13:0.308:2	0/1:13,14:31:27:0.519:2	0/1:0,22:30:22:1.00:2
chr7	77256114	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,60:32:118:0.508:2
chr7	77256713	rs3750050	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,35:33:72:0.486:2	0/1:20,18:32:39:0.474:2	./.	./.	./.	0/1:33,19:32:52:0.365:2	./.	0/1:42,26:32:68:0.382:2	0/1:40,30:34:70:0.429:2	./.	./.
chr7	77265140	rs2230602	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:26,18:33:44:0.409:2	0/1:9,12:32:21:0.571:2	./.	./.	0/1:0,27:32:27:1.00:2	0/1:35,21:31:56:0.375:2	./.	./.	./.	0/1:22,17:32:39:0.436:2	./.
chr7	77365770	rs3764824	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,31:34:32:0.969:2	0/1:1,19:33:20:0.950:2	0/1:1,2:35:3:0.667:2	0/1:13,27:33:40:0.675:2	0/1:0,41:32:41:1.00:2	0/1:23,15:32:38:0.395:2	0/1:11,15:32:26:0.577:2	0/1:0,47:33:47:1.00:2	./.	0/1:20,21:34:41:0.512:2	0/1:0,68:33:68:1.00:2
chr7	77423574	rs7953	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:31:50:1.00:2	0/1:0,27:30:27:1.00:2	0/1:2,4:31:6:0.667:2	0/1:36,21:31:57:0.368:2	0/1:2,49:30:51:0.961:2	0/1:35,33:30:68:0.485:2	0/1:33,22:31:55:0.400:2	0/1:4,57:30:61:0.934:2	./.	0/1:26,13:31:39:0.333:2	0/1:0,65:31:65:1.00:2
chr7	77531113	rs78163487	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:86,67:32:153:0.438:2	0/1:67,36:32:103:0.350:2	./.	./.	./.	./.	./.	0/1:71,71:32:142:0.500:2	./.	./.	./.
chr7	77552127	rs848486	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:14,8:31:22:0.364:2	0/1:2,4:31:6:0.667:2	./.	0/1:9,3:31:12:0.250:2	./.	0/1:18,11:31:29:0.379:2	0/1:13,9:31:22:0.409:2	0/1:16,7:30:23:0.304:2	0/1:0,21:32:21:1.00:2	./.	./.
chr7	77649085	rs117054456	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,22:28:41:0.537:2	./.	0/1:23,12:29:35:0.343:2	./.	./.	./.	./.	./.
chr7	77756580	rs2074641	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:33:28:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,3:34:3:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,35:32:36:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,42:33:42:1.00:2	0/1:19,15:32:34:0.441:2	0/1:18,9:32:27:0.333:2
chr7	77756724	rs7812015	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,4:32:4:1.00:2	./.	./.	0/1:0,7:33:7:1.00:2	./.	0/1:0,2:30:2:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,3:32:3:1.00:2	./.	./.
chr7	77789403	rs1009524	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:59,46:28:105:0.438:2	0/1:33,33:28:66:0.500:2	0/1:5,7:29:12:0.583:2	./.	./.	./.	./.	./.	./.	0/1:48,57:28:105:0.543:2	./.
chr7	78119109	rs3735442	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:74,61:33:135:0.452:2	0/1:36,46:33:82:0.561:2	0/1:0,21:32:21:1.00:2	./.	./.	0/1:81,56:31:137:0.409:2	./.	0/1:107,75:32:182:0.412:2	./.	0/1:72,83:32:156:0.535:2	0/1:98,91:32:189:0.481:2
chr7	79764566	rs140693023	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,7:32:23:0.304:2	./.	./.	./.	./.	./.	./.	./.
chr7	79833026	rs12721456	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,40:31:116:0.345:2	./.	./.	./.	0/1:83,64:31:147:0.435:2
chr7	79842157	rs10241877	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,28:32:57:0.491:2	0/1:15,7:30:22:0.318:2	./.	./.	./.	0/1:24,14:30:38:0.368:2	./.	./.	./.	./.	0/1:51,28:32:79:0.354:2
chr7	80088041	rs2074674	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:20,11:33:31:0.355:2	0/1:14,12:33:26:0.462:2	0/1:0,5:31:5:1.00:2	./.	./.	./.	0/1:0,28:32:28:1.00:2	./.	./.	./.	0/1:29,17:32:46:0.370:2
chr7	80141152	rs143118835	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,30:31:58:0.517:2	./.	./.	./.	0/1:37,30:31:67:0.448:2
chr7	80292449	rs5956	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,46:31:154:0.299:2	./.	0/1:65,56:31:121:0.463:2	./.
chr7	80374342	rs1949971	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,162:33:162:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,161:32:161:1.00:2	0/1:0,168:32:168:1.00:2	0/1:0,165:32:165:1.00:2	0/1:0,163:33:163:1.00:2	0/1:0,150:32:150:1.00:2	0/1:0,153:33:153:1.00:2	0/1:0,167:33:167:1.00:2	0/1:0,182:33:182:1.00:2
chr7	80374438	rs1949972	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,130:28:133:0.977:2	0/1:0,60:28:60:1.00:2	0/1:0,9:28:9:1.00:2	0/1:1,150:28:151:0.993:2	0/1:2,95:28:97:0.979:2	0/1:0,145:29:145:1.00:2	0/1:0,132:29:132:1.00:2	0/1:1,146:29:147:0.993:2	0/1:0,145:29:145:1.00:2	0/1:0,98:29:98:1.00:2	0/1:0,148:28:148:1.00:2
chr7	80378319	rs2272351	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:33:46:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,56:33:56:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,52:32:52:1.00:2
chr7	80387766	rs1058425	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,47:33:102:0.461:2
chr7	80418689	rs17275986	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,100:32:196:0.510:2	./.	./.	./.	./.	0/1:0,190:33:190:1.00:2
chr7	80427495	rs1880959	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,42:31:104:0.404:2	./.	./.	./.
chr7	81359051	rs5745687	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,17:30:45:0.378:2	./.	./.	./.	./.	./.	./.
chr7	81588636	rs1229502	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,53:32:77:0.688:2	./.	0/1:26,33:31:59:0.559:2	0/1:0,32:31:32:1.00:2	0/1:1,51:32:52:0.981:2	0/1:38,30:33:68:0.441:2	./.	./.
chr7	81598242	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,19:30:29:0.655:2	./.
chr7	81634754	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:34:170:0.024:2
chr7	81634760	rs200510364	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:34:158:0.025:2
chr7	81634822	rs201578104	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,7:18:33:0.212:2	./.	./.	./.	./.	0/1:31,13:13:45:0.295:2	./.	0/1:22,10:14:32:0.313:2
chr7	81667468	rs2229952	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,38:33:92:0.413:2
chr7	81695756	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.
chr7	81714123	rs200898642	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,16:11:120:0.134:2	0/1:82,19:9:101:0.188:2	./.	./.	./.	./.	./.	0/1:91,8:19:103:0.081:2
chr7	82387960	rs62465931	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:33:44:0.091:2	./.
chr7	82435033	rs12668093	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,34:33:85:0.400:2	0/1:24,27:32:51:0.529:2	./.	./.	./.	0/1:46,41:32:87:0.471:2	./.	./.	./.	./.	0/1:60,47:33:107:0.439:2
chr7	82453708	rs2522833	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:38,39:32:77:0.506:2	0/1:24,19:32:43:0.442:2	./.	0/1:58,34:31:92:0.370:2	./.	0/1:3,73:32:76:0.961:2	0/1:35,27:32:62:0.435:2	./.	0/1:37,36:34:73:0.493:2	./.	./.
chr7	82455895	rs2715150	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:18,21:29:39:0.538:2	0/1:16,10:29:26:0.385:2	./.	0/1:28,11:29:39:0.282:2	./.	0/1:0,31:29:31:1.00:2	0/1:15,7:30:22:0.318:2	./.	0/1:16,13:31:29:0.448:2	./.	./.
chr7	82467547	rs199650110	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,8:31:10:0.800:2	./.	./.	./.	./.
chr7	82544987	rs17156844	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,5:32:12:0.417:2	0/1:83,73:33:156:0.468:2	./.	0/1:82,82:33:164:0.500:2	./.	./.	./.	./.	0/1:89,73:32:162:0.451:2
chr7	82579126	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:33:123:0.033:2	./.	./.	./.
chr7	82580666	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,33:32:76:0.434:2	./.	./.	./.
chr7	82581557	rs61995904	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,41:32:84:0.488:2
chr7	82581859	rs976714	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,57:30:57:1.00:2	./.	0/1:104,89:30:193:0.461:2	./.	./.	./.	./.	./.	./.
chr7	82582846	rs10954696	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:30:11:1.00:2	./.	0/1:26,31:31:57:0.544:2	./.	./.	./.	./.	./.	./.
chr7	82583609	rs10487648	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,31:32:56:0.554:2	./.	./.	./.	./.	./.	./.
chr7	82585758	rs61995910	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,49:33:133:0.368:2
chr7	82595157	rs201051025	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:33:196:0.020:2	./.	./.
chr7	82763657	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:197:0.020:2
chr7	82764425	rs2877	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,181:32:184:0.984:2	0/1:1,110:31:111:0.991:2	0/1:0,29:32:29:1.00:2	0/1:1,166:32:167:0.994:2	0/1:0,109:31:109:1.00:2	0/1:2,154:31:156:0.987:2	0/1:0,116:31:116:1.00:2	0/1:74,53:31:127:0.417:2	0/1:166,7:33:173:0.040:2	0/1:1,139:31:140:0.993:2	0/1:0,187:32:187:1.00:2
chr7	82784311	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:161,5:28:167:0.030:2	./.	./.	./.	./.	./.	./.
chr7	82784456	rs6972461	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,27:30:40:0.675:2	0/1:1,36:31:37:0.973:2	./.	./.
chr7	82784527	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,6:33:65:0.092:2
chr7	82784832	rs77721383	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,48:32:99:0.485:2
chr7	82785097	rs61741659	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:110,80:32:190:0.421:2	0/1:54,60:32:115:0.526:2	./.	0/1:102,86:33:188:0.457:2	./.	0/1:110,72:33:182:0.396:2	./.	./.	./.	0/1:102,92:32:194:0.474:2	./.
chr7	82785099	rs61741653	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,83:30:189:0.439:2	./.	./.	./.
chr7	82785271	rs112144434	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:87,68:32:155:0.439:2	./.	./.	./.	./.	./.	./.
chr7	82785309	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,12:16:160:0.075:2
chr7	82785333	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,17:12:147:0.116:2	./.	./.	./.
chr7	83029438	rs2722974	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,171:32:174:0.983:2	0/1:2,125:32:127:0.984:2	0/1:18,15:31:33:0.455:2	0/1:130,64:32:194:0.330:2	0/1:79,47:31:126:0.373:2	0/1:2,167:31:169:0.988:2	0/1:75,56:32:131:0.427:2	0/1:103,72:31:175:0.411:2	./.	0/1:101,76:32:177:0.429:2	0/1:1,171:33:172:0.994:2
chr7	83029499	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:35:194:0.021:2
chr7	83034754	rs2245441	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:33:47:1.00:2	0/1:0,32:32:32:1.00:2	0/1:1,4:32:5:0.800:2	0/1:31,17:30:48:0.354:2	0/1:0,32:32:32:1.00:2	0/1:0,53:31:53:1.00:2	0/1:21,26:31:47:0.553:2	0/1:26,17:31:43:0.395:2	./.	0/1:30,31:32:61:0.508:2	0/1:0,60:32:60:1.00:2
chr7	83037731	rs61729612	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,46:33:107:0.430:2	0/1:60,54:33:114:0.474:2	0/1:54,22:32:76:0.289:2	./.
chr7	83037751	rs2722985	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:31:87:1.00:2	0/1:0,39:31:39:1.00:2	0/1:5,5:30:10:0.500:2	0/1:62,56:30:118:0.475:2	0/1:1,106:31:107:0.991:2	0/1:0,103:31:103:1.00:2	0/1:74,59:31:133:0.444:2	0/1:59,48:31:107:0.449:2	./.	0/1:23,47:32:70:0.671:2	0/1:0,107:31:107:1.00:2
chr7	83590806	rs138002949	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,6:29:196:0.031:2	./.
chr7	83590852	rs797821	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:104,90:31:194:0.464:2	0/1:64,73:29:137:0.533:2	0/1:25,11:30:36:0.306:2	0/1:5,176:31:181:0.972:2	./.	0/1:1,178:31:179:0.994:2	./.	0/1:103,85:31:188:0.452:2	0/1:97,89:31:186:0.478:2	0/1:3,169:31:172:0.983:2	0/1:85,91:30:176:0.517:2
chr7	83606518	rs701320	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,67:32:137:0.489:2	0/1:70,41:31:111:0.369:2	0/1:18,9:31:27:0.333:2	0/1:1,134:31:135:0.993:2	0/1:2,130:30:132:0.985:2	0/1:75,67:31:142:0.472:2	./.	0/1:77,54:31:131:0.412:2	0/1:0,144:31:144:1.00:2	0/1:0,146:31:146:1.00:2	0/1:1,127:32:128:0.992:2
chr7	83610743	rs148900275	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:33:79:0.051:2	./.	./.
chr7	83634713	rs7804122	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:27,37:29:64:0.578:2	0/1:22,31:28:53:0.585:2	0/1:6,5:30:11:0.455:2	./.	./.	0/1:36,39:29:75:0.520:2	0/1:0,73:28:73:1.00:2	./.	0/1:40,56:30:96:0.583:2	./.	./.
chr7	84628989	rs7800072	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:107,73:32:180:0.406:2	0/1:43,33:33:76:0.434:2	0/1:17,9:33:26:0.346:2	./.	0/1:94,80:32:174:0.460:2	0/1:2,137:32:139:0.986:2	./.	0/1:6,148:33:154:0.961:2	0/1:81,83:33:165:0.506:2	0/1:76,77:33:153:0.503:2	./.
chr7	84644500	rs17559084	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:34,41:30:75:0.547:2	0/1:30,32:32:62:0.516:2	0/1:4,4:28:8:0.500:2	./.	0/1:51,24:31:75:0.320:2	0/1:0,73:31:73:1.00:2	./.	0/1:2,106:31:108:0.981:2	0/1:41,59:32:100:0.590:2	0/1:50,34:31:84:0.405:2	./.
chr7	84651849	rs141893504	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,71:32:146:0.486:2	0/1:50,52:32:102:0.510:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	84727159	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:29:92:0.043:2	./.	./.	./.
chr7	86539302	rs34412146	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,44:32:88:0.500:2
chr7	86542455	rs35895874	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,41:31:96:0.427:2	0/1:34,16:32:50:0.320:2	0/1:3,5:30:8:0.625:2	0/1:39,58:31:97:0.598:2	./.	./.	./.	./.	./.	./.	./.
chr7	86800351	rs3747807	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:30:47:1.00:2	0/1:0,39:29:39:1.00:2	0/1:2,3:28:5:0.600:2	0/1:0,55:29:56:1.00:2	0/1:0,40:30:40:1.00:2	0/1:0,75:28:75:1.00:2	0/1:1,68:29:69:0.986:2	0/1:0,88:29:88:1.00:2	0/1:0,72:30:72:1.00:2	0/1:0,52:30:52:1.00:2	0/1:34,43:28:77:0.558:2
chr7	86810656	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	86813831	rs11974238	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,30:31:67:0.448:2	./.	./.	./.	./.	./.	./.	./.
chr7	87021023	rs7785206	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,24:33:48:0.500:2	./.	./.	./.
chr7	87035710	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,6:31:117:0.051:2	./.	./.	./.	./.
chr7	87056176	rs2230028	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,33:31:69:0.478:2	0/1:20,27:33:47:0.574:2	./.	./.	./.	0/1:53,45:33:98:0.459:2
chr7	87060844	rs45575636	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:85,52:30:137:0.380:2	./.	./.	./.	./.	./.	./.
chr7	87079298	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:34:127:0.031:2	./.	./.	./.	./.
chr7	87079406	rs2109505	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,6:30:20:0.300:2	./.	./.	./.	0/1:18,14:32:32:0.438:2	./.	./.
chr7	87082292	rs1202283	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,31:32:79:0.392:2	0/1:14,16:32:30:0.533:2	0/1:1,4:31:5:0.800:2	0/1:28,22:31:50:0.440:2	./.	0/1:35,29:31:65:0.453:2	./.	0/1:1,64:32:65:0.985:2	./.	0/1:0,53:32:53:1.00:2	0/1:41,31:33:72:0.431:2
chr7	87092185	rs2302387	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,31:30:75:0.413:2	./.	./.	./.	0/1:50,55:31:105:0.524:2	./.	0/1:53,51:31:104:0.490:2
chr7	87133574	rs202087295	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,5:27:101:0.050:2	./.
chr7	87133655	rs2235051	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,4:34:196:0.020:2	./.	./.	./.	./.	./.	0/1:166,4:35:170:0.024:2	./.
chr7	87138645	rs1045642	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:58,51:29:109:0.468:2	0/1:34,33:30:67:0.493:2	./.	0/1:61,66:30:127:0.520:2	0/1:74,63:29:137:0.460:2	0/1:75,58:29:133:0.436:2	0/1:4,129:30:133:0.970:2	0/1:81,78:29:159:0.491:2	0/1:0,148:30:148:1.00:2	0/1:56,59:29:115:0.513:2	0/1:0,103:29:103:1.00:2
chr7	87160618	rs2032582	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,44:33:83:0.530:2	0/1:28,20:32:48:0.417:2	0/1:7,5:33:12:0.417:2	0/1:39,44:32:83:0.530:2	0/1:32,27:31:59:0.458:2	0/1:50,55:31:105:0.524:2	0/1:0,57:32:57:1.00:2	0/1:54,53:32:107:0.495:2	0/1:0,105:33:105:1.00:2	0/1:35,57:33:92:0.620:2	0/1:0,120:32:120:1.00:2
chr7	87179601	rs1128503	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,20:32:32:0.625:2	0/1:5,7:31:12:0.583:2	./.	0/1:29,17:33:46:0.370:2	0/1:15,22:32:37:0.595:2	0/1:38,31:32:69:0.449:2	0/1:0,49:31:49:1.00:2	0/1:21,42:32:63:0.667:2	0/1:0,45:32:45:1.00:2	0/1:14,20:32:34:0.588:2	0/1:0,38:31:38:1.00:2
chr7	87179809	rs2229109	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,15:31:28:0.536:2	0/1:5,6:31:11:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	87199564	rs2235015	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,7:31:17:0.412:2	0/1:21,13:31:34:0.382:2	0/1:14,4:32:18:0.222:2	./.	0/1:0,18:33:18:1.00:2	./.	0/1:13,8:33:21:0.381:2
chr7	87229440	rs9282564	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,38:29:90:0.422:2	./.
chr7	87229501	rs2214102	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,92:32:92:1.00:2	0/1:0,33:32:33:1.00:2	./.	0/1:0,96:33:96:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,106:33:106:1.00:2	0/1:1,95:33:96:0.990:2	0/1:0,62:32:62:1.00:2	0/1:0,117:33:117:1.00:2
chr7	87399979	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:30:91:0.044:2
chr7	87407213	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	87477257	rs724665	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,15:32:69:0.217:2	./.	./.	./.	./.	./.	./.	./.
chr7	87514408	rs1476703	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:32:167:0.024:2	./.	./.	./.
chr7	87536565	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,6:29:109:0.055:2	./.	./.	./.
chr7	87536680	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,3:31:37:0.081:2	./.	./.	./.
chr7	87536719	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,3:33:35:0.086:2	./.	./.	./.
chr7	87564497	rs2279542	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:36:3:0.667:2	0/1:0,2:30:2:1.00:2	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	0/1:0,2:32:2:1.00:2	./.	0/1:0,3:32:3:1.00:2	./.
chr7	87704999	rs111428945	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,34:31:78:0.436:2
chr7	87754915	rs17255978	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,17:32:35:0.486:2	./.	./.	./.	./.
chr7	87774512	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:149,4:33:153:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr7	87774727	rs3761806	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,37:33:76:0.487:2	0/1:21,13:33:34:0.382:2	./.	0/1:43,22:33:65:0.338:2	0/1:44,26:32:70:0.371:2	./.	./.	0/1:0,69:33:69:1.00:2	./.	0/1:33,26:33:59:0.441:2	./.
chr7	87811261	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:33:57:0.070:2
chr7	87840263	rs6964163	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:53,57:32:110:0.518:2	0/1:38,23:32:62:0.377:2	./.	0/1:2,103:33:105:0.981:2	0/1:36,34:32:70:0.486:2	./.	0/1:0,90:33:90:1.00:2	0/1:59,66:32:125:0.528:2	0/1:0,141:33:141:1.00:2	0/1:47,51:32:98:0.520:2	0/1:78,82:32:160:0.513:2
chr7	87913221	rs34741656	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:31,34:31:65:0.523:2	0/1:24,21:31:45:0.467:2	./.	./.	./.	./.	./.	0/1:61,42:30:103:0.408:2	./.	./.	./.
chr7	87913361	rs1981529	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,58:32:105:0.552:2	0/1:28,27:31:55:0.491:2	0/1:0,11:31:11:1.00:2	0/1:40,39:32:79:0.494:2	0/1:0,55:31:55:1.00:2	0/1:0,81:30:81:1.00:2	0/1:45,27:32:72:0.375:2	0/1:67,33:32:100:0.330:2	./.	0/1:39,43:32:82:0.524:2	0/1:0,108:32:108:1.00:2
chr7	87913487	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,4:32:25:0.160:2	./.	./.	./.	./.	./.
chr7	88423881	rs2293583	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,30:32:62:0.484:2	./.	./.	./.	./.	./.	0/1:33,22:32:56:0.400:2	./.
chr7	88424115	rs2373396	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:97,88:33:185:0.476:2	0/1:80,41:33:121:0.339:2	./.	./.	0/1:77,93:32:170:0.547:2	./.	0/1:101,79:33:180:0.439:2	0/1:85,107:33:192:0.557:2	./.	./.	0/1:101,91:34:192:0.474:2
chr7	88424291	rs4363132	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:52,38:32:90:0.422:2	0/1:30,15:32:45:0.333:2	./.	./.	0/1:41,24:32:65:0.369:2	./.	0/1:33,25:31:58:0.431:2	0/1:47,26:30:73:0.356:2	./.	./.	0/1:66,81:32:147:0.551:2
chr7	88956699	rs38971	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:6,9:33:15:0.600:2	0/1:7,6:31:13:0.462:2	./.	./.	0/1:7,13:32:20:0.650:2	./.	./.	./.	./.	./.	./.
chr7	88963039	rs1916830	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,22:31:58:0.379:2	./.	./.	./.	./.
chr7	88964000	rs801839	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,8:31:24:0.333:2	0/1:5,4:31:9:0.444:2	./.	0/1:5,9:30:14:0.643:2	0/1:7,8:30:15:0.533:2	./.	0/1:5,11:31:16:0.688:2	0/1:5,7:31:12:0.583:2	0/1:0,19:32:19:1.00:2	0/1:5,8:31:13:0.615:2	0/1:8,11:31:19:0.579:2
chr7	88964196	rs801840	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,26:32:56:0.464:2	0/1:17,22:32:39:0.564:2	./.	0/1:37,24:32:61:0.393:2	0/1:43,15:32:58:0.259:2	./.	0/1:26,18:32:44:0.409:2	0/1:24,28:32:52:0.538:2	0/1:0,44:32:44:1.00:2	0/1:19,25:32:44:0.568:2	0/1:39,38:32:77:0.494:2
chr7	88964226	rs79931924	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,21:31:61:0.344:2	./.	./.	./.	./.	0/1:29,20:32:49:0.408:2	./.	./.
chr7	88964227	rs76870774	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,21:33:61:0.344:2	./.	./.	./.	./.	0/1:29,20:32:49:0.408:2	./.	./.
chr7	88964510	rs62469518	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,35:32:92:0.380:2	0/1:54,42:32:96:0.438:2	0/1:58,48:32:106:0.453:2	./.	./.	./.
chr7	88964557	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,5:32:111:0.045:2	./.
chr7	88965021	rs10487075	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,22:30:48:0.458:2	0/1:35,21:32:56:0.375:2	0/1:22,23:31:45:0.511:2	./.
chr7	88965141	rs6962993	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,46:34:89:0.517:2	./.	./.	./.	./.	0/1:39,33:34:72:0.458:2	./.	./.
chr7	88965480	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,45:33:107:0.421:2
chr7	88965609	rs6963781	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,12:31:33:0.364:2	./.	./.	./.	./.	0/1:26,14:31:40:0.350:2	./.	./.
chr7	89790175	rs4015375	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:118,4:33:122:0.033:2	0/1:76,7:31:83:0.084:2	./.	0/1:165,10:33:175:0.057:2	./.	0/1:138,6:32:144:0.042:2	./.	0/1:190,7:32:197:0.036:2	./.	./.	./.
chr7	89792351	rs11563328	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,41:32:112:0.373:2	0/1:55,50:32:105:0.476:2	./.	./.	./.	./.
chr7	89797144	rs259136	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,13:32:13:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,13:31:13:1.00:2	0/1:9,11:32:20:0.550:2	0/1:0,18:31:18:1.00:2
chr7	89839239	rs194500	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,10:31:20:0.500:2	./.
chr7	89854446	rs194520	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:63,68:33:131:0.519:2	0/1:33,34:33:67:0.507:2	./.	./.	0/1:0,97:32:97:1.00:2	0/1:58,82:32:140:0.586:2	0/1:38,69:32:107:0.645:2	./.	./.	0/1:37,58:32:95:0.611:2	0/1:1,136:32:137:0.993:2
chr7	89856413	rs17865520	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,26:32:83:0.313:2	./.
chr7	89856608	rs110360	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:33,42:32:75:0.560:2	0/1:36,27:32:63:0.429:2	./.	./.	0/1:0,61:31:61:1.00:2	0/1:41,40:31:81:0.494:2	0/1:32,37:32:69:0.536:2	./.	./.	0/1:35,45:31:80:0.563:2	0/1:2,115:32:118:0.983:2
chr7	89856644	rs2016903	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:47,48:32:95:0.505:2	0/1:42,33:32:75:0.440:2	./.	./.	0/1:42,27:31:69:0.391:2	0/1:52,45:31:97:0.464:2	./.	./.	./.	./.	./.
chr7	89861832	rs194524	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:37,24:32:61:0.393:2	0/1:17,11:32:28:0.393:2	./.	./.	0/1:0,48:31:48:1.00:2	0/1:32,23:31:55:0.418:2	0/1:17,32:31:49:0.653:2	./.	./.	0/1:42,20:32:62:0.323:2	0/1:1,98:32:99:0.990:2
chr7	89861890	rs194525	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,7:32:21:0.333:2	0/1:14,8:32:22:0.364:2	./.	./.	0/1:0,27:32:27:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,27:31:27:1.00:2	0/1:15,13:32:28:0.464:2	0/1:14,15:32:29:0.517:2	0/1:0,20:31:20:1.00:2	0/1:0,39:31:39:1.00:2
chr7	89906609	rs3761805	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:32:8:0.375:2	./.	./.	0/1:29,29:31:58:0.500:2	0/1:21,8:32:29:0.276:2	./.	./.	./.	./.
chr7	89912301	rs1029365	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:70,58:31:128:0.453:2	0/1:42,51:31:93:0.548:2	0/1:8,16:30:24:0.667:2	./.	0/1:0,145:31:145:1.00:2	0/1:0,151:31:151:1.00:2	0/1:1,107:31:108:0.991:2	0/1:77,81:32:158:0.513:2	./.	0/1:0,142:32:142:1.00:2	0/1:0,138:32:138:1.00:2
chr7	89929343	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:34:52:0.077:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	89938588	rs7803620	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,19:32:50:0.380:2	0/1:34,15:32:49:0.306:2	0/1:3,4:34:7:0.571:2	0/1:60,4:33:64:0.063:2	0/1:0,46:33:46:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,46:32:46:1.00:2	0/1:27,33:32:61:0.550:2	0/1:42,25:32:67:0.373:2	0/1:0,44:32:44:1.00:2	0/1:0,85:32:85:1.00:2
chr7	89938680	rs1134956	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:43,32:32:75:0.427:2	0/1:27,25:32:52:0.481:2	./.	./.	0/1:0,48:31:48:1.00:2	0/1:68,49:31:117:0.419:2	0/1:57,23:33:80:0.288:2	0/1:59,56:31:115:0.487:2	./.	0/1:0,65:32:65:1.00:2	0/1:0,100:32:100:1.00:2
chr7	89969831	rs42637	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:34,51:30:85:0.600:2	0/1:37,27:29:64:0.422:2	./.	./.	0/1:1,95:30:96:0.990:2	0/1:59,56:30:115:0.487:2	0/1:46,45:30:91:0.495:2	0/1:70,69:29:139:0.496:2	0/1:32,88:30:120:0.733:2	0/1:0,118:30:118:1.00:2	0/1:76,63:30:139:0.453:2
chr7	89969878	rs2285399	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,26:34:44:0.591:2	0/1:22,17:32:39:0.436:2	./.	./.	0/1:0,51:32:51:1.00:2	0/1:43,31:32:74:0.419:2	0/1:15,22:33:37:0.595:2	./.	0/1:30,48:34:78:0.615:2	0/1:0,72:32:72:1.00:2	0/1:42,36:32:78:0.462:2
chr7	89982132	rs6972561	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,7:32:21:0.333:2	0/1:13,12:28:25:0.480:2	./.	./.	./.	0/1:11,8:29:19:0.421:2
chr7	89982233	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:33:101:0.040:2	./.	./.
chr7	89983808	rs42663	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,13:31:16:0.813:2	0/1:1,10:32:11:0.909:2	./.	0/1:17,8:33:25:0.320:2	0/1:0,7:32:7:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,10:30:10:1.00:2	0/1:10,8:32:18:0.444:2	0/1:16,12:33:28:0.429:2	0/1:0,28:32:28:1.00:2	0/1:0,24:33:24:1.00:2
chr7	89984409	rs42664	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:63,44:33:108:0.411:2	0/1:46,33:32:79:0.418:2	./.	0/1:58,54:33:112:0.482:2	0/1:1,71:32:72:0.986:2	0/1:55,31:32:86:0.360:2	0/1:30,21:31:51:0.412:2	0/1:48,41:32:89:0.461:2	0/1:76,57:34:133:0.429:2	0/1:0,79:33:79:1.00:2	0/1:72,74:33:146:0.507:2
chr7	90001496	rs35001814	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,20:33:35:0.571:2	0/1:13,15:32:28:0.536:2	0/1:6,3:32:9:0.333:2	0/1:21,24:32:45:0.533:2	./.	./.	./.	0/1:23,12:32:35:0.343:2	0/1:22,32:33:54:0.593:2	./.	./.
chr7	90014408	rs17863999	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,16:31:34:0.471:2	0/1:9,13:31:22:0.591:2	0/1:1,5:30:6:0.833:2	0/1:41,32:30:73:0.438:2	./.	./.	./.	0/1:47,26:31:73:0.356:2	0/1:38,21:32:59:0.356:2	./.	./.
chr7	90042831	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:32:65:0.062:2	./.	./.	./.	./.	./.
chr7	90042857	rs3810874	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:19,8:32:27:0.296:2	0/1:17,12:31:29:0.414:2	./.	./.	./.	./.	0/1:11,10:31:21:0.476:2	./.	./.	0/1:12,13:31:25:0.520:2	./.
chr7	90043182	rs1017104	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:32,18:33:50:0.360:2	0/1:16,11:33:27:0.407:2	0/1:3,2:34:5:0.400:2	./.	./.	./.	0/1:24,10:32:34:0.294:2	./.	./.	0/1:22,25:33:47:0.532:2	./.
chr7	90043304	rs1017105	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:22,21:32:43:0.488:2	0/1:13,7:31:20:0.350:2	./.	./.	./.	./.	0/1:12,11:32:24:0.478:2	./.	./.	0/1:23,10:32:33:0.303:2	./.
chr7	90043314	rs1017106	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:32:37:1.00:2	0/1:0,18:32:18:1.00:2	0/1:6,3:32:9:0.333:2	0/1:0,41:31:41:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,19:32:19:1.00:2	0/1:26,15:32:41:0.366:2	0/1:0,48:33:48:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,56:32:56:1.00:2
chr7	90043869	rs11563542	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,25:32:98:0.255:2	./.	./.	./.	./.
chr7	90044323	rs17867644	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,27:32:44:0.614:2	./.	./.	./.	./.	./.	./.	0/1:54,35:33:89:0.393:2
chr7	90044945	rs9731	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,35:32:70:0.500:2	0/1:31,15:32:46:0.326:2	./.	0/1:30,25:32:55:0.455:2	0/1:0,31:32:31:1.00:2	0/1:0,52:32:52:1.00:2	0/1:32,17:32:49:0.347:2	0/1:34,25:33:59:0.424:2	0/1:0,63:33:63:1.00:2	0/1:38,28:33:66:0.424:2	0/1:45,37:33:82:0.451:2
chr7	90338850	rs11767691	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:38,31:31:69:0.449:2	0/1:14,20:31:34:0.588:2	./.	./.	./.	./.	./.	0/1:54,36:31:90:0.400:2	0/1:0,66:31:66:1.00:2	./.	0/1:53,39:30:92:0.424:2
chr7	90675195	rs3779581	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:24,41:32:65:0.631:2	0/1:23,20:31:43:0.465:2	./.	./.	./.	./.	0/1:31,12:31:43:0.279:2	0/1:50,28:31:78:0.359:2	0/1:57,41:32:98:0.418:2	./.	0/1:72,43:31:115:0.374:2
chr7	90895834	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,4:30:119:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr7	90896831	rs3750145	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,18:32:41:0.439:2	./.	./.	./.	./.	0/1:16,23:31:39:0.590:2	./.
chr7	90896858	rs192284995	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:29:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	90897731	rs1052015	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,9:32:30:0.300:2	./.	./.	./.	./.	0/1:19,23:32:42:0.548:2	./.
chr7	90899051	rs6970297	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,13:32:37:0.351:2	0/1:14,8:33:22:0.364:2	./.	0/1:0,29:32:29:1.00:2	0/1:1,20:31:21:0.952:2	0/1:0,22:31:22:1.00:2	0/1:16,10:31:26:0.385:2	./.	0/1:10,16:33:26:0.615:2	0/1:9,16:31:25:0.640:2	0/1:20,15:33:35:0.429:2
chr7	91503228	rs10266424	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,45:32:46:0.978:2	0/1:0,21:31:21:1.00:2	0/1:0,5:31:5:1.00:2	0/1:15,21:32:36:0.583:2	./.	0/1:35,21:31:56:0.375:2	0/1:29,11:33:40:0.275:2	./.	0/1:21,25:32:46:0.543:2	0/1:1,27:32:28:0.964:2	0/1:43,27:32:70:0.386:2
chr7	91630332	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,4:32:18:0.222:2	./.	./.	./.	./.
chr7	91630620	rs6964587	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,15:30:38:0.395:2	0/1:2,28:29:30:0.933:2	0/1:22,21:31:43:0.488:2	./.	./.	0/1:20,14:32:34:0.412:2	./.	0/1:37,17:31:54:0.315:2
chr7	91632306	rs1989779	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:32:68:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,55:31:55:1.00:2	0/1:1,58:30:59:0.983:2	0/1:0,74:32:74:1.00:2	0/1:27,43:31:70:0.614:2	0/1:0,80:32:80:1.00:2
chr7	91641798	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:32:164:0.024:2	./.	./.
chr7	91641928	rs13245393	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,16:33:32:0.500:2	0/1:0,16:32:16:1.00:2	0/1:19,10:33:29:0.345:2	./.	./.	0/1:13,17:34:30:0.567:2	./.	0/1:19,12:33:31:0.387:2
chr7	91667829	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:33:113:0.035:2	./.
chr7	91691601	rs10236397	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,31:31:60:0.517:2	0/1:1,29:30:30:0.967:2	0/1:44,38:31:83:0.463:2	./.	./.	0/1:54,32:32:86:0.372:2	./.	0/1:74,42:32:116:0.362:2
chr7	91708898	rs35759833	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,9:32:25:0.360:2	./.
chr7	91712698	rs6960867	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,37:33:70:0.529:2	0/1:4,43:32:47:0.915:2	0/1:33,28:32:61:0.459:2	./.	./.	0/1:58,37:34:95:0.389:2	./.	0/1:46,32:33:78:0.410:2
chr7	91713972	rs10228334	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,55:32:126:0.437:2	0/1:0,74:31:74:1.00:2	0/1:72,66:31:138:0.478:2	./.	./.	0/1:81,60:32:141:0.426:2	./.	0/1:97,92:32:189:0.487:2
chr7	91714911	rs1063242	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:32:37:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,7:32:7:1.00:2	0/1:30,29:32:59:0.492:2	0/1:0,30:32:30:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,64:32:64:1.00:2
chr7	91715662	rs28927678	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,64:31:131:0.489:2	0/1:1,89:31:90:0.989:2	0/1:57,39:31:96:0.406:2	./.	./.	0/1:56,51:32:107:0.477:2	./.	0/1:60,50:32:110:0.455:2
chr7	91726927	rs1063243	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,53:30:126:0.421:2	0/1:2,74:29:76:0.974:2	0/1:59,76:30:135:0.563:2	./.	./.	0/1:100,66:31:166:0.398:2	0/1:130,4:32:134:0.030:2	0/1:78,76:30:154:0.494:2
chr7	91727466	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	91735030	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:32:94:0.043:2	./.	./.	./.
chr7	91743144	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:33:44:0.091:2	./.	./.
chr7	91743150	rs7797834	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,13:32:26:0.500:2	0/1:1,17:31:18:0.944:2	0/1:13,15:31:28:0.536:2	./.	./.	0/1:20,18:33:38:0.474:2	./.	0/1:33,16:32:49:0.327:2
chr7	91743155	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,4:32:32:0.125:2	./.	./.
chr7	91752499	rs184629573	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:151,6:33:157:0.038:2	./.	./.	./.	0/1:126,7:34:133:0.053:2	./.	./.	./.
chr7	91758205	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,9:20:193:0.047:2	./.	./.	./.
chr7	91774294	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:123,4:32:127:0.031:2	./.	./.	./.	./.	./.	./.
chr7	91779971	rs6465353	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,17:33:31:0.548:2	0/1:8,6:33:14:0.429:2	./.	./.	0/1:0,14:29:14:1.00:2	0/1:21,5:31:26:0.192:2	./.	./.	0/1:26,25:32:51:0.490:2	./.	0/1:19,18:33:37:0.486:2
chr7	91793212	rs117809044	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,13:29:47:0.277:2	./.
chr7	91794308	rs73228571	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,16:32:53:0.302:2	./.	./.	./.	./.
chr7	91842554	rs11542682	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,52:33:54:0.963:2	./.	./.	./.
chr7	91948702	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:33:36:0.111:2
chr7	92027537	rs1861635	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,81:29:81:1.00:2	./.	./.	./.
chr7	92028039	rs38794	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,29:31:77:0.377:2	0/1:32,13:32:45:0.289:2	0/1:0,6:30:6:1.00:2	0/1:0,70:31:70:1.00:2	./.	0/1:41,37:31:78:0.474:2	0/1:1,68:31:69:0.986:2	./.	0/1:46,46:32:92:0.500:2	0/1:4,49:31:53:0.925:2	0/1:43,38:32:81:0.469:2
chr7	92098266	rs141340741	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:33:3:1.00:2	./.	./.
chr7	92098478	rs75275313	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.	./.	./.
chr7	92098776	rs10266695	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,11:31:37:0.297:2	0/1:9,10:31:19:0.526:2	./.	0/1:22,5:32:27:0.185:2	./.	./.	./.	./.
chr7	92099283	rs55903518	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,60:32:118:0.508:2	./.	./.	./.	./.	./.	./.	./.
chr7	92099491	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:31:42:0.095:2	./.	./.	./.	./.	./.
chr7	92100483	rs117656305	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,3:32:13:0.231:2	0/1:9,6:32:15:0.400:2	./.	./.	./.	./.	0/1:9,18:31:27:0.667:2
chr7	92131289	rs10278857	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:31:71:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,69:30:69:1.00:2	0/1:0,83:31:83:1.00:2	0/1:1,120:31:121:0.992:2	0/1:0,88:32:88:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,120:32:120:1.00:2
chr7	92132493	rs35996821	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,8:32:30:0.267:2	./.	./.	./.	./.	./.	./.	./.
chr7	92161835	rs75703315	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,25:31:52:0.481:2	./.
chr7	92163855	rs79531673	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,18:31:28:0.643:2	./.	./.	./.	./.	./.	./.	./.
chr7	92199149	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:121,4:31:125:0.032:2	./.	./.	./.	./.	./.	./.
chr7	92207661	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:32:111:0.036:2	./.	./.	./.
chr7	92207676	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:32:114:0.035:2	./.	./.	./.
chr7	92207690	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:31:106:0.038:2	./.	./.	./.
chr7	92733975	rs78564070	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,39:31:99:0.394:2	./.	0/1:33,24:31:57:0.421:2	./.	./.	./.	./.	./.
chr7	92734051	rs117649834	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,31:32:79:0.392:2	./.	0/1:19,18:31:37:0.486:2	./.	./.	./.	./.	./.
chr7	92734064	rs150107667	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,32:31:57:0.561:2	./.
chr7	92734451	rs6965201	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,23:32:48:0.479:2	0/1:28,29:32:57:0.509:2	0/1:19,29:31:48:0.604:2	./.	0/1:64,4:32:68:0.059:2	./.	./.	./.
chr7	92762681	rs1029357	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,32:33:70:0.457:2	./.	./.	./.	./.	./.	./.
chr7	92763281	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:33:135:0.030:2
chr7	92764489	rs10488532	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,9:32:29:0.310:2	./.	0/1:12,14:29:26:0.538:2	./.	./.	./.	./.	./.
chr7	92764982	rs1133906	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:175,4:32:179:0.022:2	0/1:72,46:31:118:0.390:2	./.	./.	./.	./.	./.	./.
chr7	92825188	rs145244580	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,21:34:50:0.420:2	./.	./.
chr7	92923950	rs75893203	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,7:23:54:0.130:2	./.	0/1:11,4:26:15:0.267:2	0/1:38,7:22:45:0.156:2	0/1:36,11:23:47:0.234:2	0/1:55,9:15:64:0.141:2	0/1:31,9:21:40:0.225:2	0/1:45,14:22:59:0.237:2	0/1:64,14:17:78:0.179:2	0/1:52,12:19:64:0.188:2	0/1:70,10:20:81:0.125:2
chr7	92932811	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,4:31:20:0.200:2	./.	./.	./.	./.	./.	./.	./.
chr7	92938172	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,4:32:103:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr7	92970847	rs2106432	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,66:31:117:0.564:2	0/1:76,64:31:140:0.457:2	0/1:0,112:31:112:1.00:2	./.	./.	./.	./.	./.
chr7	92985252	rs2374639	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,51:32:87:0.586:2	0/1:31,21:33:52:0.404:2	0/1:0,71:32:71:1.00:2	./.	./.	./.	./.	./.
chr7	93055753	rs1801197	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:30:18:0.500:2	./.	0/1:70,74:31:144:0.514:2	./.	./.	./.	./.	0/1:1,128:30:129:0.992:2	./.
chr7	93116299	rs2301680	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:27,20:31:47:0.426:2	0/1:4,11:31:15:0.733:2	0/1:0,6:32:6:1.00:2	./.	0/1:0,15:30:15:1.00:2	0/1:2,20:31:22:0.909:2	0/1:0,19:31:19:1.00:2	0/1:20,9:30:29:0.310:2	0/1:17,18:32:35:0.514:2	./.	./.
chr7	93518486	rs34489123	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,4:33:9:0.444:2	./.	./.	./.	./.
chr7	93540153	rs17243826	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,43:31:87:0.494:2	./.	./.	0/1:41,28:33:69:0.406:2	./.	./.
chr7	94027699	rs1801182	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:30:51:0.078:2	./.
chr7	94028427	rs4729131	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,24:31:44:0.545:2	./.	./.	0/1:16,12:31:28:0.429:2	0/1:24,14:32:38:0.368:2	0/1:20,28:32:48:0.583:2	0/1:16,14:31:30:0.467:2	./.
chr7	94030899	rs1800222	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,37:30:86:0.430:2	0/1:36,21:30:57:0.368:2	./.	./.	./.	0/1:70,78:30:148:0.527:2	./.	./.	./.	./.	./.
chr7	94038934	rs42518	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,181:32:181:1.00:2	0/1:0,95:31:95:1.00:2	0/1:14,10:31:24:0.417:2	0/1:0,177:32:177:1.00:2	./.	0/1:1,187:32:188:0.995:2	0/1:0,184:32:184:1.00:2	0/1:0,192:32:192:1.00:2	0/1:0,178:32:178:1.00:2	0/1:0,188:32:188:1.00:2	0/1:111,76:32:187:0.406:2
chr7	94039542	rs41316929	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,16:31:51:0.314:2	./.	./.	./.	./.	./.	./.
chr7	94041937	rs412777	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:22,16:30:38:0.421:2	0/1:9,13:28:22:0.591:2	./.	0/1:3,35:29:38:0.921:2	./.	0/1:0,36:30:36:1.00:2	0/1:12,9:29:21:0.429:2	0/1:20,5:30:25:0.200:2	0/1:26,25:30:51:0.490:2	0/1:0,23:30:23:1.00:2	./.
chr7	94043239	rs42524	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,119:30:119:1.00:2	0/1:0,70:31:70:1.00:2	0/1:7,8:30:15:0.533:2	0/1:1,146:31:147:0.993:2	./.	0/1:0,127:30:127:1.00:2	0/1:0,120:30:120:1.00:2	0/1:0,159:30:160:1.00:2	0/1:0,157:31:157:1.00:2	0/1:0,129:30:130:1.00:2	0/1:85,56:30:142:0.397:2
chr7	94043274	rs421587	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,93:33:93:1.00:2	0/1:0,53:32:53:1.00:2	./.	./.	./.	0/1:56,47:32:103:0.456:2	0/1:48,53:34:101:0.525:2	./.	./.	./.	./.
chr7	94054520	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:32:135:0.030:2	./.	./.	./.	./.	./.
chr7	94056349	rs1800248	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,41:31:79:0.519:2	0/1:19,14:32:33:0.424:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	94173803	rs13242090	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,56:33:119:0.471:2	./.	./.	0/1:45,50:32:95:0.526:2	./.	0/1:1,133:34:134:0.993:2	./.	./.
chr7	94180691	rs10280457	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,36:31:62:0.581:2	./.	./.	./.	0/1:26,28:33:54:0.519:2	./.
chr7	94252691	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,28:32:77:0.364:2	./.	./.
chr7	94293045	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:32:146:0.027:2	./.	./.	./.
chr7	94294682	rs3750105	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:31:14:0.286:2	./.	./.	0/1:5,3:30:8:0.375:2	./.	0/1:1,14:31:15:0.933:2	./.	./.
chr7	94295146	rs35237090	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,31:33:57:0.544:2	./.	./.	0/1:44,26:31:70:0.371:2	./.	0/1:0,76:33:76:1.00:2	./.	./.
chr7	94295183	rs72615135	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:44,29:32:74:0.397:2	0/1:14,15:31:29:0.517:2	./.	0/1:27,23:30:50:0.460:2	./.	./.	./.	0/1:46,24:31:70:0.343:2	./.	0/1:31,40:30:71:0.563:2	0/1:32,36:32:68:0.529:2
chr7	94295207	rs191035277	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,29:32:69:0.420:2
chr7	94295652	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,10:32:73:0.137:2	./.	./.	./.	./.
chr7	94296769	rs13073	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,29:31:49:0.592:2	0/1:16,12:30:28:0.429:2	0/1:0,10:31:10:1.00:2	0/1:25,29:30:54:0.537:2	0/1:18,19:28:37:0.514:2	0/1:1,63:29:64:0.984:2	0/1:0,36:30:36:1.00:2	0/1:29,18:28:47:0.383:2	0/1:0,68:30:68:1.00:2	0/1:35,33:31:68:0.485:2	./.
chr7	94296793	rs13226637	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,25:30:61:0.410:2	./.	./.	0/1:17,14:32:31:0.452:2	./.	0/1:0,69:31:69:1.00:2	./.	./.
chr7	94297179	rs73223849	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,9:31:25:0.360:2	./.	./.	./.	./.	./.	./.
chr7	94297814	rs7810469	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,14:32:25:0.560:2	./.	./.	./.	0/1:16,10:33:26:0.385:2	./.
chr7	94298361	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,5:27:96:0.052:2	./.	./.	./.
chr7	94298461	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:32:54:0.074:2	./.	./.	./.	./.	./.
chr7	94539536	rs12536183	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,47:31:97:0.485:2	./.	./.	./.	./.
chr7	94539810	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,22:31:40:0.550:2	./.
chr7	94540527	rs61737465	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,25:30:68:0.368:2	./.	./.	0/1:75,45:29:120:0.375:2	./.	./.	./.
chr7	94740687	rs151099122	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,4:31:15:0.267:2	./.	./.	./.	./.	./.	./.
chr7	94919525	rs61749906	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,29:32:61:0.475:2	./.	./.	./.	./.
chr7	94937446	rs662	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	0/1:34,38:29:72:0.528:2	./.	0/1:38,25:28:63:0.397:2	0/1:45,35:29:80:0.438:2	./.	./.	0/1:0,99:30:99:1.00:2
chr7	94946084	rs854560	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:32:14:0.571:2	./.	0/1:29,37:31:66:0.561:2	0/1:45,42:31:87:0.483:2	0/1:33,37:30:70:0.529:2	0/1:42,43:32:85:0.506:2	0/1:46,54:32:100:0.540:2	0/1:44,41:32:85:0.482:2	./.
chr7	95001555	rs1053275	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:75,59:32:134:0.440:2	0/1:36,35:32:72:0.493:2	0/1:15,8:32:23:0.348:2	0/1:0,102:32:102:1.00:2	0/1:38,38:32:76:0.500:2	0/1:84,49:31:133:0.368:2	0/1:1,66:32:67:0.985:2	0/1:60,68:32:128:0.531:2	0/1:85,84:32:169:0.497:2	./.	0/1:0,158:32:158:1.00:2
chr7	95025600	rs13226149	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,38:31:81:0.469:2	0/1:46,39:31:85:0.459:2	./.	./.	./.	0/1:32,44:30:76:0.579:2	./.	0/1:48,36:31:84:0.429:2
chr7	95034775	rs7493	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,34:32:70:0.486:2	0/1:28,29:32:57:0.509:2	./.	./.	./.	0/1:36,39:33:75:0.520:2	./.	0/1:47,47:32:94:0.500:2
chr7	95041016	rs12026	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,15:33:45:0.333:2	0/1:13,17:33:30:0.567:2	./.	./.	./.	0/1:23,22:33:45:0.489:2	./.	0/1:45,27:32:72:0.375:2
chr7	95167042	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:34:136:0.029:2
chr7	95216394	rs4727323	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,33:32:60:0.550:2	0/1:25,12:32:37:0.324:2	./.	./.	./.	0/1:29,23:31:52:0.442:2	./.	./.	0/1:0,92:32:93:1.00:2	./.	./.
chr7	95216415	rs200015612	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,7:20:54:0.130:2	./.	./.	./.	./.	./.	./.	./.
chr7	95499234	rs3757697	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:54,30:33:84:0.357:2	0/1:22,11:32:33:0.333:2	0/1:13,7:33:20:0.350:2	./.	0/1:39,38:33:77:0.494:2	./.	./.	./.	./.	./.	./.
chr7	95668664	rs1048666	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:45,36:31:81:0.444:2	0/1:27,33:32:60:0.550:2	0/1:9,8:31:17:0.471:2	./.	./.	0/1:75,68:31:143:0.476:2	0/1:68,68:31:136:0.500:2	0/1:69,71:31:141:0.507:2	0/1:47,65:32:112:0.580:2	./.	./.
chr7	95800820	rs2301629	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:50,39:33:89:0.438:2	0/1:23,25:32:48:0.521:2	./.	0/1:1,104:32:105:0.990:2	0/1:37,37:32:74:0.500:2	0/1:56,46:32:103:0.451:2	./.	./.	0/1:54,63:33:117:0.538:2	0/1:63,56:33:119:0.471:2	./.
chr7	95818694	rs368491877	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,27:32:62:0.435:2	./.	./.	./.	./.	./.
chr7	96318234	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,4:31:83:0.048:2	./.	./.	./.	./.	./.	./.	./.
chr7	96339061	rs4733	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,30:29:63:0.476:2	./.
chr7	96635583	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,10:14:63:0.159:2	./.	./.	./.	./.	./.
chr7	96810351	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:33:109:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	97482481	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,11:32:35:0.314:2	./.	./.	./.
chr7	97483921	rs1049677	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,25:32:45:0.556:2	./.	./.	./.	./.	./.
chr7	97488205	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:32:77:0.052:2	./.	./.	./.	./.	./.
chr7	97488569	rs1049674	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:30:76:1.00:2	0/1:1,49:31:50:0.980:2	0/1:0,12:30:12:1.00:2	0/1:0,124:30:124:1.00:2	0/1:0,70:30:70:1.00:2	0/1:0,94:30:94:1.00:2	0/1:66,49:30:115:0.426:2	0/1:95,49:29:144:0.340:2	./.	0/1:58,35:30:93:0.376:2	0/1:0,131:30:131:1.00:2
chr7	97498460	rs187946887	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,13:31:26:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	97617754	rs191467604	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:32:176:0.023:2	./.	./.
chr7	97822115	rs11765552	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:30,14:33:44:0.318:2	0/1:13,9:32:22:0.409:2	./.	./.	0/1:23,28:32:51:0.549:2	0/1:0,36:32:36:1.00:2	./.	0/1:35,14:32:49:0.286:2	./.	0/1:27,13:33:40:0.325:2	0/1:21,22:33:43:0.512:2
chr7	97822210	rs3801294	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,18:32:35:0.514:2	0/1:8,12:31:20:0.600:2	./.	./.	0/1:18,15:31:33:0.455:2	0/1:0,21:32:21:1.00:2	./.	0/1:11,16:32:27:0.593:2	./.	0/1:14,12:33:26:0.462:2	0/1:17,10:33:27:0.370:2
chr7	97842216	rs116918728	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:34:5:0.800:2	./.	./.	./.	./.
chr7	97847040	rs2279676	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,37:31:57:0.649:2	./.	./.	./.	0/1:15,33:32:48:0.688:2	0/1:11,17:32:28:0.607:2	./.	./.
chr7	97852399	rs11762014	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:31:6:0.500:2	0/1:18,34:32:52:0.654:2	./.	./.	./.	0/1:13,28:31:41:0.683:2	0/1:18,18:31:36:0.500:2	./.	./.
chr7	97852443	rs61745947	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,27:26:52:0.519:2
chr7	97854393	rs2291745	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:32,31:29:63:0.492:2	0/1:24,20:30:44:0.455:2	./.	0/1:53,48:30:101:0.475:2	./.	./.	0/1:56,63:30:119:0.529:2	./.	0/1:62,49:29:111:0.441:2	0/1:44,26:30:70:0.371:2	0/1:35,24:30:59:0.407:2
chr7	97862148	rs367929161	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,50:32:97:0.515:2	./.	./.	./.	./.	./.	./.	./.
chr7	97863138	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:33:99:0.040:2	./.
chr7	97863145	rs2291750	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:37,32:31:69:0.464:2	0/1:18,22:30:40:0.550:2	./.	0/1:58,53:30:111:0.477:2	./.	./.	0/1:60,69:30:129:0.535:2	./.	0/1:64,54:31:118:0.458:2	0/1:58,35:30:93:0.376:2	0/1:72,58:31:131:0.446:2
chr7	97873994	rs1874344	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,22:31:22:1.00:2	./.	./.	./.	0/1:35,23:31:58:0.397:2	0/1:1,34:31:35:0.971:2	0/1:26,27:31:53:0.509:2	./.
chr7	97921941	rs181990452	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,37:31:57:0.649:2	0/1:19,18:32:38:0.486:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	97921996	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:33:98:0.041:2	./.	./.	./.	./.	./.
chr7	97922851	rs12728	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:26,22:33:48:0.458:2	0/1:22,9:30:31:0.290:2	./.	./.	0/1:0,39:31:39:1.00:2	0/1:0,58:32:58:1.00:2	0/1:36,17:31:53:0.321:2	0/1:25,30:32:55:0.545:2	./.	0/1:26,30:32:56:0.536:2	./.
chr7	97922875	rs13008	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,23:32:47:0.489:2	0/1:13,6:27:19:0.316:2	./.	./.	0/1:14,20:30:34:0.588:2	0/1:0,60:30:60:1.00:2	0/1:24,16:31:40:0.400:2	0/1:23,28:31:51:0.549:2	./.	0/1:22,25:31:47:0.532:2	./.
chr7	97933601	rs1045916	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,18:30:39:0.462:2	0/1:9,10:31:19:0.526:2	./.	0/1:0,60:30:60:1.00:2	0/1:1,67:29:68:0.985:2	0/1:0,59:29:59:1.00:2	0/1:36,30:30:66:0.455:2	0/1:0,79:30:79:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,45:30:45:1.00:2	./.
chr7	98460824	rs10238224	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:31:36:1.00:2	0/1:0,17:31:17:1.00:2	0/1:1,3:31:4:0.750:2	0/1:0,52:30:52:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,38:31:38:1.00:2	0/1:21,15:31:36:0.417:2
chr7	98495408	rs55702649	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,16:33:37:0.432:2	./.
chr7	98506441	rs35310331	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:31:10:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:21,26:31:47:0.553:2
chr7	98507775	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:32:56:0.071:2	./.	./.	./.	./.
chr7	98508227	rs34648627	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,22:31:47:0.468:2	./.	./.	./.	./.	./.
chr7	98628294	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:32:50:0.080:2	./.	./.
chr7	98630653	rs188285028	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,29:29:64:0.460:2
chr7	98650051	rs219797	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:19,11:30:30:0.367:2	0/1:6,8:30:14:0.571:2	0/1:1,6:32:7:0.857:2	./.	0/1:17,21:27:38:0.553:2	0/1:0,36:29:36:1.00:2	./.	0/1:18,31:29:49:0.633:2	0/1:34,20:29:54:0.370:2	0/1:22,17:29:39:0.436:2	0/1:0,31:29:31:1.00:2
chr7	98779647	rs368199472	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,39:31:88:0.443:2	./.	./.	./.
chr7	98782750	rs10953283	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,14:32:14:1.00:2	0/1:33,33:32:66:0.500:2	0/1:51,45:32:96:0.469:2	0/1:0,74:31:74:1.00:2	0/1:0,111:32:111:1.00:2	./.	./.	0/1:24,20:32:44:0.455:2	0/1:28,19:31:47:0.404:2
chr7	98790650	rs202149995	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,5:20:34:0.152:2
chr7	98790669	rs7783606	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,17:30:46:0.370:2	./.	./.	./.
chr7	98790699	rs7783618	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,19:31:56:0.339:2	./.	./.	./.
chr7	98792835	rs61751722	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,20:32:43:0.465:2
chr7	98800834	rs61749907	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:33:78:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	98800863	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,4:33:86:0.047:2	./.	./.	./.	./.	./.	./.	./.
chr7	98984399	rs4765	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,30:31:68:0.441:2	./.	0/1:39,36:31:75:0.480:2	./.	./.	./.
chr7	98997946	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:181,8:30:189:0.042:2	0/1:193,4:32:197:0.020:2	./.	./.	./.	./.	./.
chr7	98997947	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:186,7:32:193:0.036:2	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.	./.
chr7	99022931	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,6:32:80:0.075:2	./.	./.	./.	./.	./.
chr7	99032521	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:33:165:0.024:2
chr7	99032559	rs150504114	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,33:33:69:0.478:2	./.
chr7	99032593	rs11555142	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,20:30:46:0.435:2	./.	0/1:34,27:30:61:0.443:2	./.	./.	./.
chr7	99045872	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,5:31:20:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	99047978	rs883403	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,52:28:113:0.460:2	./.	0/1:64,64:30:128:0.500:2	./.	./.	./.
chr7	99051674	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:27:63:0.063:2	./.	./.	./.	./.
chr7	99077376	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.	./.	./.	./.	./.
chr7	99081730	rs6962772	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,31:32:68:0.456:2	./.	0/1:49,47:32:96:0.490:2	./.	./.	./.
chr7	99085103	rs75593529	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,43:31:84:0.512:2	0/1:57,39:31:96:0.406:2	./.	./.	./.	./.	./.
chr7	99091612	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:138,4:31:142:0.028:2	./.	./.	./.	./.	./.	./.
chr7	99117840	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,6:34:140:0.043:2
chr7	99129203	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:182,4:32:186:0.022:2	./.	./.	./.	./.	./.	./.
chr7	99145678	rs61998164	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,18:33:44:0.409:2	./.	./.	./.	./.	./.
chr7	99145845	rs10238965	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,92:30:199:0.462:2	./.	0/1:104,96:31:200:0.480:2	./.	./.	./.
chr7	99246026	rs28365069	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,6:34:18:0.333:2	./.	./.	./.
chr7	99247743	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.	./.
chr7	99247764	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,6:31:197:0.030:2	./.	./.	./.
chr7	99247802	rs188908808	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:152,5:32:157:0.032:2	./.	./.	0/1:175,4:32:179:0.022:2	./.	./.	0/1:183,5:33:189:0.027:2	./.	./.	./.
chr7	99247835	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,6:32:173:0.035:2	0/1:186,5:33:191:0.026:2	./.	./.
chr7	99247843	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.
chr7	99306685	rs2257401	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,110:33:111:0.991:2	0/1:0,61:32:61:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,159:32:159:1.00:2	0/1:1,75:32:76:0.987:2	0/1:0,106:32:106:1.00:2	0/1:0,78:32:78:1.00:2	0/1:2,110:32:112:0.982:2	0/1:0,139:33:139:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,165:32:165:1.00:2
chr7	99358489	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,10:31:199:0.050:2	./.
chr7	99359860	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,6:28:159:0.038:2	./.	./.	./.	./.
chr7	99364009	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:31:95:0.042:2	./.	./.	./.	./.	./.
chr7	99364015	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:32:99:0.040:2	./.	./.	./.	./.	./.
chr7	99364016	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:31:100:0.040:2	./.	./.	./.	./.	./.
chr7	99367392	rs4986908	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,58:34:132:0.439:2	./.	./.
chr7	99454450	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,20:31:58:0.345:2	./.	./.	./.
chr7	99454482	rs45621431	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,23:32:49:0.469:2	0/1:13,23:32:36:0.639:2	./.	0/1:29,9:31:38:0.237:2	0/1:10,11:30:21:0.524:2	./.	./.	./.	0/1:31,31:32:62:0.500:2	./.	./.
chr7	99457605	rs680055	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,39:32:89:0.438:2	./.	./.	./.	./.	./.
chr7	99459256	rs17342647	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,56:32:120:0.467:2	0/1:25,33:32:58:0.569:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	99473858	rs17161997	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,30:32:57:0.526:2	./.	./.	./.	./.	./.
chr7	99474427	rs2572023	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,34:31:68:0.500:2	0/1:29,25:31:54:0.463:2	0/1:9,6:32:15:0.400:2	0/1:49,57:32:106:0.538:2	./.	0/1:33,48:32:81:0.593:2	0/1:63,39:32:102:0.382:2	./.	0/1:58,55:33:113:0.487:2	./.	./.
chr7	99489868	rs33998596	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,8:30:19:0.421:2	0/1:7,9:33:16:0.563:2	./.	./.	./.	./.	0/1:13,11:31:24:0.458:2
chr7	99490190	rs35432946	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,22:32:42:0.524:2	0/1:31,25:30:56:0.446:2	./.	./.	./.	./.	0/1:36,32:30:68:0.471:2
chr7	99500899	rs2247762	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,27:32:66:0.409:2	0/1:26,12:32:38:0.316:2	0/1:6,5:32:11:0.455:2	0/1:45,35:33:80:0.438:2	./.	./.	0/1:48,39:33:87:0.448:2	./.	0/1:59,40:34:99:0.404:2	./.	./.
chr7	99500911	rs2247761	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,32:33:71:0.451:2	0/1:24,12:32:36:0.333:2	0/1:6,5:31:11:0.455:2	0/1:49,45:33:94:0.479:2	0/1:49,54:32:103:0.524:2	0/1:0,84:32:84:1.00:2	0/1:50,42:32:92:0.457:2	./.	0/1:62,35:33:97:0.361:2	./.	0/1:73,50:33:123:0.407:2
chr7	99565827	rs375811707	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,5:31:83:0.060:2	./.	./.	./.	./.	0/1:84,9:31:93:0.097:2	./.	0/1:79,4:32:83:0.048:2
chr7	99566007	rs8192465	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,39:31:86:0.453:2
chr7	99569394	rs17295356	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,31:32:94:0.330:2	0/1:29,16:32:45:0.356:2	0/1:8,9:31:17:0.529:2	0/1:91,52:31:143:0.364:2	0/1:0,101:31:101:1.00:2	0/1:81,68:31:149:0.456:2	0/1:95,57:32:153:0.375:2	0/1:0,119:32:119:1.00:2	0/1:109,65:32:174:0.374:2	0/1:63,47:32:110:0.427:2	0/1:80,49:32:129:0.380:2
chr7	99573585	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,6:34:83:0.072:2	./.	./.
chr7	99654689	rs11558476	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	0/1:13,10:31:23:0.435:2	0/1:21,21:32:42:0.500:2	0/1:28,13:30:41:0.317:2	0/1:38,23:32:61:0.377:2	./.	0/1:27,15:31:42:0.357:2	0/1:44,25:32:69:0.362:2
chr7	99669802	rs11550034	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,20:33:31:0.645:2	./.	./.	./.	./.	0/1:24,16:33:40:0.400:2	./.	./.
chr7	99690690	rs4928	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:33:7:1.00:2	./.	./.	./.	./.	./.	./.	0/1:19,24:33:43:0.558:2	./.
chr7	99690747	rs1130958	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:34:9:1.00:2	./.	./.	./.	./.	./.	./.	0/1:14,21:34:35:0.600:2	./.
chr7	99693078	rs12267	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,34:29:65:0.523:2	0/1:42,32:29:74:0.432:2	0/1:25,31:29:56:0.554:2	0/1:58,30:29:88:0.341:2	./.	./.	0/1:22,15:30:37:0.405:2
chr7	99693552	rs2307355	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,15:32:15:1.00:2	./.	./.	./.	./.	./.	./.	0/1:39,39:32:78:0.500:2	./.
chr7	99696704	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:31:69:0.058:2	./.	./.	./.	./.	./.
chr7	99696797	rs2070215	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:36,29:32:65:0.446:2	0/1:21,18:32:39:0.462:2	./.	./.	./.	./.	0/1:50,54:32:104:0.519:2	./.	./.	./.	./.
chr7	99700565	rs138437966	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:32:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	99702947	rs41280968	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,77:31:131:0.588:2	./.	0/1:80,56:31:136:0.412:2	./.	./.	./.
chr7	99704448	rs4134932	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,11:31:43:0.256:2
chr7	99707809	rs4134918	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,44:31:93:0.473:2	./.	./.
chr7	99711040	rs4134903	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:41,27:31:68:0.397:2	0/1:27,26:32:53:0.491:2	./.	./.	./.	./.	0/1:118,69:32:187:0.369:2	./.	./.	./.	./.
chr7	99719902	rs145806158	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,26:32:63:0.413:2	./.	./.	./.	./.	./.	./.	./.
chr7	99725146	rs78225095	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.
chr7	99747130	rs12878	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:36,28:31:64:0.438:2	0/1:26,38:32:64:0.594:2	0/1:0,15:31:15:1.00:2	./.	0/1:85,57:31:142:0.401:2	0/1:77,43:31:120:0.358:2	0/1:1,150:31:152:0.993:2	0/1:94,66:31:160:0.413:2	./.	0/1:59,44:32:103:0.427:2	0/1:56,57:31:114:0.504:2
chr7	99757612	rs3823646	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:61,53:31:114:0.465:2	0/1:42,31:30:73:0.425:2	./.	./.	0/1:115,80:30:195:0.410:2	0/1:96,92:29:188:0.489:2	0/1:3,154:30:157:0.981:2	0/1:106,89:29:195:0.456:2	./.	./.	0/1:73,74:30:147:0.503:2
chr7	99758136	rs3800951	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,27:33:46:0.587:2	0/1:16,17:32:33:0.515:2	./.	./.	0/1:53,37:31:90:0.411:2	0/1:41,37:33:79:0.474:2	0/1:0,70:33:70:1.00:2	0/1:39,33:33:72:0.458:2	./.	./.	0/1:58,31:34:89:0.348:2
chr7	99767857	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,35:31:99:0.357:2	./.	./.	./.	./.	./.	./.
chr7	99768957	rs75779608	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,9:30:17:0.529:2	0/1:5,11:29:16:0.688:2	./.	./.	0/1:13,8:27:21:0.381:2
chr7	99768964	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,3:30:27:0.111:2	./.	./.	./.	./.	./.
chr7	99769758	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,52:33:92:0.565:2
chr7	99772298	rs10252037	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,14:32:15:0.933:2	0/1:0,7:31:7:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,25:33:25:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,36:33:36:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,32:32:32:1.00:2
chr7	99773415	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,4:26:33:0.121:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	99778227	rs11531577	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,11:30:66:0.167:2	0/1:61,23:31:84:0.274:2	./.	./.	0/1:44,24:31:68:0.353:2
chr7	99778285	rs2272343	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,17:33:76:0.224:2	0/1:69,31:32:100:0.310:2	./.	./.	0/1:32,17:32:49:0.347:2
chr7	99786136	rs373396363	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:33:113:0.035:2	./.	./.	./.	./.
chr7	99794841	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:172,20:33:192:0.104:2	./.	./.	./.	./.	./.	./.
chr7	99796146	rs3735241	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:63,50:29:114:0.442:2	0/1:50,71:28:121:0.587:2	./.	./.	./.	./.	0/1:0,108:28:108:1.00:2	0/1:57,60:28:117:0.513:2	./.	./.	0/1:62,54:27:116:0.466:2
chr7	99796495	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:186,6:30:192:0.031:2	./.	./.	0/1:171,10:31:181:0.055:2	./.	./.	./.	./.
chr7	99796529	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,6:32:175:0.034:2	./.	./.	./.	./.
chr7	99796578	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:32:152:0.026:2	./.	./.	0/1:168,5:33:174:0.029:2	./.
chr7	99799845	rs1043915	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:24,28:30:52:0.538:2	0/1:16,12:31:28:0.429:2	./.	./.	./.	./.	0/1:33,22:31:55:0.400:2	./.	./.	./.	./.
chr7	99811387	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,4:32:76:0.053:2	./.	./.	./.	./.	./.	./.	./.
chr7	99817556	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,8:32:150:0.053:2	./.	0/1:137,7:33:144:0.049:2	./.	./.	./.
chr7	99817585	rs7786505	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,72:29:106:0.679:2	0/1:67,68:29:135:0.504:2	./.	./.	0/1:50,67:30:117:0.573:2
chr7	99817859	rs2906645	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,14:27:26:0.538:2	0/1:4,6:25:10:0.600:2	0/1:0,3:28:3:1.00:2	0/1:0,9:27:9:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,16:29:16:1.00:2	0/1:2,6:28:8:0.750:2	0/1:0,12:28:12:1.00:2	0/1:0,7:28:7:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,4:26:4:1.00:2
chr7	99817977	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,4:32:138:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr7	99818000	rs144843179	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:74,4:31:78:0.051:2	./.	./.	0/1:135,6:31:141:0.043:2	./.	./.	./.	./.	0/1:93,4:32:97:0.041:2	./.	./.
chr7	99818058	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,7:33:64:0.109:2	./.	./.	./.	./.	0/1:33,3:32:36:0.083:2	./.	./.
chr7	99821286	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,10:27:180:0.056:2	0/1:168,6:30:174:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	99821315	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,8:29:179:0.045:2	0/1:173,6:31:179:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:32:186:0.022:2
chr7	99821317	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,8:23:177:0.045:2	0/1:173,6:31:179:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	99821685	rs863450	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,74:33:143:0.517:2	0/1:44,56:32:100:0.560:2	0/1:1,30:31:31:0.968:2	0/1:0,151:31:151:1.00:2	0/1:1,124:31:125:0.992:2	0/1:0,144:32:144:1.00:2	0/1:56,65:32:121:0.537:2	0/1:1,155:32:156:0.994:2	0/1:2,142:33:144:0.986:2	0/1:0,120:32:120:1.00:2	0/1:2,152:32:154:0.987:2
chr7	99917365	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,4:31:84:0.048:2	./.	./.	./.	./.	./.	./.	./.
chr7	99917393	rs374034824	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:42,3:32:45:0.067:2	./.	./.	0/1:60,7:32:67:0.104:2	./.	./.	./.	./.	./.	./.	./.
chr7	99917416	rs112622797	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,14:32:41:0.341:2	0/1:13,9:32:22:0.409:2	./.	0/1:27,33:32:60:0.550:2	0/1:21,25:32:46:0.543:2	./.	./.	0/1:13,15:32:28:0.536:2	0/1:28,32:33:60:0.533:2	./.	0/1:14,22:34:36:0.611:2
chr7	99956436	rs11771799	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,6:31:39:0.154:2	0/1:44,5:31:49:0.102:2	./.	0/1:61,6:32:67:0.090:2	0/1:47,4:32:51:0.078:2	./.	./.	0/1:54,4:30:58:0.069:2	./.	./.	0/1:63,6:32:69:0.087:2
chr7	99956439	rs35986051	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,7:24:42:0.167:2	0/1:44,5:26:49:0.102:2	./.	0/1:58,6:32:64:0.094:2	0/1:44,5:32:49:0.102:2	./.	./.	0/1:53,4:27:57:0.070:2	./.	./.	0/1:64,6:33:70:0.086:2
chr7	99956444	rs11761306	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:40,8:26:48:0.167:2	0/1:45,7:27:52:0.135:2	./.	0/1:56,9:26:65:0.138:2	0/1:47,8:28:55:0.145:2	./.	./.	0/1:54,9:28:63:0.143:2	0/1:63,4:29:67:0.060:2	./.	0/1:65,12:28:77:0.156:2
chr7	99956564	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,9:30:104:0.087:2	./.	./.	0/1:117,4:30:121:0.033:2	./.	./.	./.
chr7	99971313	rs2405442	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,10:32:22:0.476:2	0/1:13,11:34:24:0.458:2	0/1:0,2:33:2:1.00:2	0/1:21,21:32:42:0.500:2	0/1:0,33:32:33:1.00:2	0/1:0,32:32:32:1.00:2	./.	0/1:0,46:32:46:1.00:2	0/1:0,35:34:35:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,29:33:29:1.00:2
chr7	99971834	rs1859788	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,56:29:109:0.514:2	0/1:22,33:30:55:0.600:2	0/1:0,11:29:12:1.00:2	0/1:83,88:30:171:0.515:2	0/1:0,82:30:82:1.00:2	0/1:0,76:29:76:1.00:2	./.	0/1:2,129:29:131:0.985:2	0/1:0,102:31:103:1.00:2	0/1:0,72:30:72:1.00:2	0/1:2,138:28:140:0.986:2
chr7	99971918	rs138900405	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:36,5:33:41:0.122:2	./.	0/1:98,8:32:106:0.075:2	0/1:61,6:28:67:0.090:2	./.	./.	0/1:78,7:32:85:0.082:2	0/1:89,6:34:95:0.063:2	./.	0/1:94,6:33:100:0.060:2
chr7	99999551	rs183621422	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,94:33:190:0.495:2	./.	./.
chr7	100016781	rs141450215	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,44:33:81:0.543:2	./.	./.	./.
chr7	100016795	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:34:57:0.070:2	./.
chr7	100017454	rs7783159	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,26:29:70:0.371:2	0/1:29,19:31:48:0.396:2	./.	0/1:56,28:30:84:0.333:2	0/1:52,19:29:71:0.268:2	./.	./.	0/1:39,16:29:55:0.291:2	0/1:53,27:32:80:0.338:2	./.	0/1:58,27:32:85:0.318:2
chr7	100028187	rs6975729	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:30:5:0.600:2	./.	./.	./.	0/1:4,5:31:9:0.556:2	0/1:0,2:32:2:1.00:2	./.	./.
chr7	100028295	rs377527642	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,16:29:27:0.593:2	./.	./.	./.	./.	./.
chr7	100028484	rs6962151	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,6:29:25:0.240:2	0/1:12,9:31:21:0.429:2	./.	0/1:23,7:32:30:0.233:2	0/1:26,10:32:36:0.278:2	./.	./.	0/1:19,10:32:29:0.345:2	0/1:14,5:29:19:0.263:2	./.	0/1:18,5:29:23:0.217:2
chr7	100028593	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,49:31:129:0.380:2	./.	./.	./.	./.
chr7	100064719	rs7806537	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,27:33:60:0.450:2	0/1:14,17:32:31:0.548:2	0/1:10,5:33:15:0.333:2	0/1:45,37:32:82:0.451:2	0/1:1,77:32:78:0.987:2	0/1:52,37:31:89:0.416:2	./.	0/1:48,30:32:78:0.385:2	0/1:29,45:32:74:0.608:2	0/1:28,17:32:45:0.378:2	0/1:36,21:34:57:0.368:2
chr7	100065443	rs7811142	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,9:30:17:0.529:2	0/1:6,3:33:9:0.333:2	./.	0/1:8,10:31:18:0.556:2	0/1:10,8:29:18:0.444:2	./.	./.	0/1:1,7:30:8:0.875:2	0/1:5,12:31:17:0.706:2	./.	0/1:9,6:30:15:0.400:2
chr7	100072031	rs7809801	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,33:28:52:0.635:2	0/1:18,19:29:37:0.514:2	./.	0/1:42,21:27:63:0.333:2	0/1:23,23:27:46:0.500:2	./.	./.	0/1:54,22:29:76:0.289:2	0/1:48,27:29:75:0.360:2	./.	0/1:29,24:29:53:0.453:2
chr7	100087174	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:31:124:0.032:2	./.	./.	./.	./.	./.
chr7	100088640	rs2897358	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,23:28:55:0.418:2	0/1:27,17:30:44:0.386:2	./.	0/1:16,27:30:43:0.628:2	0/1:40,20:30:60:0.333:2	./.	./.	0/1:42,25:30:67:0.373:2	0/1:43,23:30:66:0.348:2	./.	0/1:25,18:29:43:0.419:2
chr7	100137085	rs78279132	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:33:6:0.667:2	./.
chr7	100160264	rs17855473	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,14:28:50:0.280:2	0/1:40,16:30:56:0.286:2	./.	./.	./.	./.	./.
chr7	100172858	rs3197597	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	0/1:6,5:32:11:0.455:2	0/1:5,4:32:9:0.444:2	./.
chr7	100172914	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	100175473	rs909152	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,8:29:24:0.333:2	0/1:5,10:31:15:0.667:2	0/1:0,6:29:6:1.00:2	0/1:21,19:33:40:0.475:2	0/1:0,23:30:23:1.00:2	0/1:0,33:33:33:1.00:2	0/1:14,10:33:24:0.417:2	0/1:0,44:33:44:1.00:2	0/1:0,44:33:44:1.00:2	0/1:0,25:32:25:1.00:2	0/1:18,16:32:34:0.471:2
chr7	100198386	rs11768465	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,39:32:78:0.500:2	0/1:46,17:31:63:0.270:2	./.
chr7	100205269	rs199736289	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,79:32:172:0.459:2	./.	./.
chr7	100212754	rs11764045	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:30:8:0.625:2	./.	./.	./.	./.	./.	0/1:59,41:32:100:0.410:2	0/1:49,21:30:70:0.300:2	./.
chr7	100225031	rs2075674	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,11:31:27:0.407:2	0/1:12,7:33:19:0.368:2	./.
chr7	100226902	rs41303501	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,10:31:22:0.455:2	0/1:5,7:31:12:0.583:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	100228635	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:28:11:0.273:2	./.	0/1:3,4:30:7:0.571:2	./.	0/1:6,3:27:9:0.333:2	./.	./.	0/1:9,6:30:15:0.400:2
chr7	100244678	rs141640000	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,18:31:29:0.621:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	100246387	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,6:28:92:0.065:2	./.	./.	./.
chr7	100279946	rs117080933	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,8:30:12:0.667:2	./.	./.	0/1:3,4:32:7:0.571:2	./.
chr7	100280268	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,6:31:13:0.462:2
chr7	100281768	rs221794	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,3:30:15:0.200:2	./.	./.	0/1:18,6:28:24:0.250:2	0/1:0,32:30:32:1.00:2	0/1:21,5:28:26:0.192:2	0/1:9,6:28:15:0.400:2	./.	0/1:11,6:32:17:0.353:2	0/1:0,13:29:13:1.00:2	0/1:0,16:26:16:1.00:2
chr7	100282707	rs117339142	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,15:31:42:0.357:2	./.
chr7	100283914	rs143725633	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,19:31:40:0.475:2	./.
chr7	100285888	rs2272572	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:32:7:0.571:2	./.	./.	./.	./.	./.	./.	0/1:9,12:33:21:0.571:2	./.
chr7	100304864	rs11559028	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,65:29:179:0.363:2	./.	0/1:106,73:28:179:0.408:2	./.	./.	./.
chr7	100320290	rs137953994	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,38:32:81:0.469:2	./.	./.	./.
chr7	100334516	rs34828430	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,26:31:48:0.542:2	./.	./.	./.	./.	./.	./.	./.
chr7	100346053	rs79163323	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,35:31:53:0.660:2	./.	./.	./.
chr7	100349919	rs200193075	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:34:3:1.00:2
chr7	100350095	rs221824	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:36:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	100350340	rs201192266	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,4:32:18:0.222:2	./.	./.	./.	./.
chr7	100350361	rs200387712	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,3:30:18:0.167:2	0/1:28,4:32:32:0.125:2	./.	./.	./.	./.	./.
chr7	100350394	rs113151628	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,3:28:18:0.167:2	0/1:30,4:31:34:0.118:2	./.	./.	./.	./.	./.
chr7	100350424	rs201073731	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,3:31:15:0.200:2	./.	./.	./.	./.
chr7	100350763	rs6942733	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,14:30:29:0.483:2	0/1:19,23:30:42:0.548:2
chr7	100352972	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:33:67:0.060:2	./.
chr7	100353022	rs141969527	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,16:31:51:0.314:2	./.	./.	./.	./.	./.	./.	./.
chr7	100355885	rs147589227	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,73:31:145:0.503:2	./.	./.	./.	./.	./.	./.	./.
chr7	100361675	rs2293767	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,5:31:14:0.357:2	./.	./.	./.	./.	0/1:51,46:31:97:0.474:2	0/1:87,4:32:91:0.044:2	0/1:30,19:32:49:0.388:2	./.
chr7	100364679	rs77770888	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,71:32:146:0.486:2	./.	./.	./.
chr7	100365567	rs10953302	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,30:31:58:0.517:2	./.
chr7	100365613	rs10953303	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,17:31:38:0.447:2	./.
chr7	100366284	rs10247980	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:32:9:0.667:2	./.	./.	0/1:51,34:31:85:0.400:2	./.	0/1:1,82:33:83:0.988:2	./.	0/1:40,24:33:64:0.375:2	./.
chr7	100371100	rs2734880	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:30:46:1.00:2	0/1:0,22:32:22:1.00:2	0/1:5,3:28:8:0.375:2	0/1:0,84:30:84:1.00:2	./.	0/1:0,73:31:73:1.00:2	0/1:1,91:32:92:0.989:2	0/1:0,103:32:103:1.00:2	0/1:1,52:33:53:0.981:2	0/1:29,27:32:56:0.482:2	0/1:23,26:30:49:0.531:2
chr7	100371114	rs314298	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,40:30:40:1.00:2	0/1:0,17:30:17:1.00:2	./.	0/1:0,74:31:75:1.00:2	./.	0/1:0,56:30:56:1.00:2	0/1:1,70:30:71:0.986:2	0/1:0,90:30:90:1.00:2	0/1:1,39:32:40:0.975:2	0/1:22,20:30:42:0.476:2	0/1:20,24:31:44:0.545:2
chr7	100371417	rs12673041	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,87:31:160:0.544:2
chr7	100371473	rs314299	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,100:32:101:0.990:2	0/1:0,68:32:68:1.00:2	0/1:11,10:33:21:0.476:2	0/1:1,109:31:111:0.991:2	./.	0/1:65,52:32:117:0.444:2	0/1:3,112:32:115:0.974:2	0/1:82,46:32:128:0.359:2	0/1:1,115:33:116:0.991:2	0/1:47,56:32:103:0.544:2	./.
chr7	100371474	rs78193191	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,11:31:21:0.524:2	./.	0/1:76,54:30:130:0.415:2	./.	./.	./.	./.	0/1:57,39:32:97:0.406:2	0/1:64,45:32:109:0.413:2
chr7	100371479	rs71555302	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,54:28:106:0.509:2	./.	./.	./.	./.
chr7	100373077	rs542137	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:30:11:0.545:2	./.	0/1:80,56:31:136:0.412:2	./.	./.	./.	./.	0/1:48,67:32:115:0.583:2	0/1:62,39:32:101:0.386:2
chr7	100373367	rs539445	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:90,71:32:161:0.441:2	./.	./.	./.	./.	0/1:71,69:32:140:0.493:2	0/1:66,76:31:142:0.535:2
chr7	100374087	rs314300	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,93:33:94:0.989:2	0/1:0,45:32:45:1.00:2	0/1:14,7:33:21:0.333:2	0/1:0,81:32:81:1.00:2	./.	0/1:61,48:32:109:0.440:2	0/1:3,93:32:96:0.969:2	0/1:101,69:32:171:0.406:2	0/1:0,132:34:132:1.00:2	0/1:37,49:33:86:0.570:2	0/1:56,43:32:99:0.434:2
chr7	100374144	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:33:168:0.024:2	./.	./.
chr7	100377082	rs531503	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,3:30:8:0.375:2	./.	./.	./.	./.	0/1:5,7:32:12:0.583:2	./.
chr7	100377373	rs482308	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	0/1:7,4:32:11:0.364:2	./.	./.	./.	./.	0/1:1,6:31:7:0.857:2	0/1:4,3:33:7:0.429:2
chr7	100386900	rs191137	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:30:51:1.00:2	0/1:0,23:29:23:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,51:29:51:1.00:2	0/1:32,22:28:54:0.407:2	0/1:0,45:30:45:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,73:29:73:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,57:28:57:1.00:2
chr7	100388640	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,4:31:61:0.066:2	./.	./.	./.	./.	./.	./.
chr7	100389590	rs76325149	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,62:30:99:0.626:2	0/1:65,25:29:90:0.278:2	0/1:73,34:31:107:0.318:2	./.	./.	./.
chr7	100390149	rs148236040	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:33:9:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	100391581	rs314339	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,41:28:42:0.976:2	0/1:0,18:30:18:1.00:2	0/1:1,4:29:5:0.800:2	0/1:28,17:30:45:0.378:2	./.	0/1:33,14:29:47:0.298:2	0/1:0,26:30:26:1.00:2	0/1:26,14:29:40:0.350:2	0/1:0,29:31:29:1.00:2	0/1:22,13:28:35:0.371:2	0/1:22,10:30:32:0.313:2
chr7	100395003	rs314344	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,93:32:94:0.989:2	0/1:0,51:31:51:1.00:2	0/1:7,11:31:18:0.611:2	0/1:1,132:31:133:0.992:2	0/1:87,106:31:193:0.549:2	0/1:58,77:31:135:0.570:2	0/1:4,186:32:190:0.979:2	0/1:93,93:31:186:0.500:2	0/1:0,128:32:128:1.00:2	0/1:55,53:30:108:0.491:2	0/1:65,55:30:120:0.458:2
chr7	100403121	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,12:12:66:0.182:2	./.	./.	./.
chr7	100410597	rs2230585	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,36:31:60:0.600:2	0/1:26,36:30:62:0.581:2	./.	0/1:37,32:30:69:0.464:2	./.	0/1:19,20:30:39:0.513:2	0/1:30,24:31:54:0.444:2
chr7	100411278	rs314359	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:32:71:1.00:2	0/1:0,39:31:39:1.00:2	0/1:9,3:30:12:0.250:2	0/1:0,96:33:96:1.00:2	0/1:51,46:32:97:0.474:2	0/1:62,61:32:123:0.496:2	0/1:2,90:33:92:0.978:2	0/1:68,65:33:133:0.489:2	0/1:1,87:33:88:0.989:2	0/1:51,39:32:90:0.433:2	0/1:45,44:32:89:0.494:2
chr7	100416250	rs144173	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,11:32:11:1.00:2	0/1:0,8:31:8:1.00:2	./.	0/1:0,11:31:11:1.00:2	0/1:5,8:30:13:0.615:2	0/1:11,6:30:18:0.353:2	0/1:0,18:29:18:1.00:2	0/1:11,10:29:21:0.476:2	0/1:0,8:32:8:1.00:2	0/1:7,3:29:10:0.300:2	./.
chr7	100420155	rs56173078	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,43:30:112:0.387:2	0/1:77,44:30:122:0.364:2	./.	./.	./.	./.	./.	./.
chr7	100424587	rs2304374	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,15:33:15:1.00:2	0/1:0,10:32:10:1.00:2	0/1:1,2:31:3:0.667:2	0/1:0,32:32:32:1.00:2	0/1:21,22:32:43:0.512:2	./.	0/1:0,6:34:6:1.00:2	./.	0/1:0,26:34:26:1.00:2	0/1:15,17:32:32:0.531:2	./.
chr7	100458795	rs314378	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,83:30:83:1.00:2	0/1:0,55:30:55:1.00:2	./.	0/1:62,56:30:118:0.475:2	./.	./.	0/1:4,164:30:168:0.976:2	0/1:83,91:29:174:0.523:2	0/1:2,133:30:135:0.985:2	./.	0/1:54,46:29:100:0.460:2
chr7	100465824	rs2437100	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,35:31:55:0.636:2	./.	./.	./.	./.	./.	./.
chr7	100466441	rs2075756	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,30:31:31:0.968:2	0/1:0,35:32:35:1.00:2	./.	0/1:24,23:31:47:0.489:2	./.	./.	./.	./.	0/1:34,26:32:60:0.433:2	./.	./.
chr7	100468284	rs1054391	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,108:32:108:1.00:2	0/1:0,54:31:54:1.00:2	./.	0/1:93,78:32:172:0.456:2	./.	./.	0/1:1,186:32:187:0.995:2	0/1:87,101:32:188:0.537:2	0/1:2,181:33:183:0.989:2	./.	0/1:69,48:31:117:0.410:2
chr7	100481800	rs201173432	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,7:20:69:0.101:2
chr7	100482026	rs15624	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,17:31:18:0.944:2	0/1:1,15:33:16:0.938:2	./.	0/1:11,12:32:23:0.522:2	./.	./.	0/1:0,18:31:18:1.00:2	0/1:20,18:33:38:0.474:2	0/1:0,26:33:26:1.00:2	./.	0/1:8,18:32:26:0.692:2
chr7	100486088	rs3087504	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,101:33:102:0.990:2	0/1:1,64:33:65:0.985:2	./.	0/1:99,76:33:175:0.434:2	./.	./.	0/1:1,131:32:132:0.992:2	0/1:84,93:32:177:0.525:2	0/1:1,132:33:133:0.992:2	./.	0/1:83,85:33:168:0.506:2
chr7	100486656	rs13241786	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,33:30:33:1.00:2	0/1:0,16:29:16:1.00:2	./.	0/1:0,45:30:45:1.00:2	0/1:24,18:30:42:0.429:2	./.	0/1:1,47:29:48:0.979:2	0/1:42,42:30:84:0.500:2	0/1:0,47:31:47:1.00:2	./.	0/1:21,14:30:35:0.400:2
chr7	100486754	rs12666989	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,8:30:17:0.471:2	0/1:20,10:33:30:0.333:2	0/1:13,8:32:21:0.381:2	./.	0/1:14,10:29:24:0.417:2
chr7	100488658	rs1799806	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,8:25:9:0.889:2	./.	0/1:38,31:26:69:0.449:2	0/1:0,78:27:78:1.00:2	./.	0/1:40,56:26:96:0.583:2	./.	0/1:0,87:27:88:1.00:2	0/1:37,33:25:70:0.471:2
chr7	100675376	rs10229731	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,43:32:80:0.538:2	./.	./.	./.	./.	./.
chr7	100675512	rs10259584	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,52:31:101:0.515:2	./.	./.	./.	./.	./.
chr7	100675537	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:31:150:0.027:2	./.	./.	./.
chr7	100675976	rs56103274	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,35:31:78:0.449:2	0/1:31,19:31:50:0.380:2	./.	0/1:0,89:30:89:1.00:2	0/1:57,40:29:97:0.412:2	0/1:40,46:30:86:0.535:2	0/1:50,42:31:92:0.457:2	0/1:66,35:29:101:0.347:2	./.	./.	0/1:46,29:31:75:0.387:2
chr7	100676409	rs34834039	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,49:31:125:0.392:2	./.	./.	./.	./.	./.
chr7	100677210	rs79084107	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,17:30:118:0.144:2	./.	./.	./.	./.	./.
chr7	100677279	rs76184171	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,42:33:148:0.284:2	./.	./.	./.	./.	./.
chr7	100677283	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:30:80:0.050:2
chr7	100677285	rs74852422	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,39:31:150:0.260:2	./.	./.	./.	./.	./.
chr7	100677333	rs200686630	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,29:31:127:0.228:2	./.	./.	./.	./.	./.
chr7	100677378	rs143956720	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,7:26:84:0.083:2	./.	./.	./.	./.	./.
chr7	100677405	rs141963257	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,14:30:88:0.159:2	./.	./.	./.	./.	./.
chr7	100677409	rs150735476	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,15:31:85:0.176:2	./.	./.	./.	./.	./.
chr7	100677415	rs57597607	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,16:32:88:0.182:2	./.	./.	./.	./.	./.
chr7	100677455	rs61075804	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,62:30:119:0.521:2	./.	./.	./.	./.	./.
chr7	100677457	rs59155935	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,19:31:123:0.154:2	./.	./.	./.	./.	./.
chr7	100677502	rs10267904	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,7:32:108:0.065:2	./.	./.	./.	./.	./.
chr7	100677523	rs10238201	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,13:30:106:0.123:2	./.	./.	./.	./.	./.
chr7	100677526	rs10238202	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,13:27:105:0.124:2	./.	./.	./.	./.	./.
chr7	100677556	rs4373459	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,20:30:120:0.167:2	./.	./.	./.	./.	./.
chr7	100677572	rs60940057	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,28:31:134:0.209:2	./.	./.	./.	./.	./.
chr7	100677586	rs189731103	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,25:29:153:0.163:2	./.	./.	./.	./.	./.
chr7	100677625	rs115078078	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,14:30:163:0.086:2	./.	./.	./.	./.	./.
chr7	100677630	rs78990442	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,5:30:94:0.053:2	./.	./.	./.	./.	0/1:107,55:32:162:0.340:2	./.	./.	./.	./.	./.
chr7	100677642	rs4729646	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,5:28:101:0.050:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,5:31:121:0.041:2
chr7	100677645	rs114262718	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,10:28:162:0.062:2	./.	./.	./.	./.	./.
chr7	100677704	rs78330257	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,32:32:167:0.192:2	./.	./.	./.	./.	./.
chr7	100677714	rs79432420	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,34:30:173:0.197:2	./.	./.	./.	./.	./.
chr7	100677806	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:119,4:32:123:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr7	100677816	rs77671499	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,39:31:188:0.207:2	./.	./.	./.	./.	./.
chr7	100677819	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:106,5:31:112:0.045:2	./.	./.	./.	./.	./.	./.	./.
chr7	100677902	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,8:29:176:0.046:2	./.	./.	./.	./.	./.
chr7	100677944	rs10264727	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,100:32:172:0.581:2	./.	./.	./.	./.	./.
chr7	100677974	rs113876641	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,23:32:172:0.134:2	./.	./.	./.	./.	./.
chr7	100677988	rs11769696	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,23:32:176:0.131:2	./.	./.	./.	./.	./.
chr7	100677995	rs149287079	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,20:32:177:0.113:2	./.	./.	./.	./.	./.
chr7	100678013	rs75312831	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,30:30:176:0.170:2	./.	./.	./.	./.	./.
chr7	100678029	rs142558659	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,6:27:174:0.034:2	./.	./.	./.	./.	./.
chr7	100678075	rs147945988	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,12:30:168:0.071:2	./.	./.	./.	./.	./.
chr7	100678086	rs4729647	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:31:66:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,123:32:123:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,161:31:161:1.00:2	0/1:0,86:31:86:1.00:2	0/1:0,115:31:115:1.00:2	0/1:46,65:32:113:0.586:2	0/1:0,108:32:108:1.00:2	0/1:0,87:32:87:1.00:2
chr7	100678337	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:29:50:0.080:2	./.	./.	./.	./.
chr7	100678370	rs79819548	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,21:31:66:0.318:2	./.
chr7	100678372	rs11769823	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,9:30:95:0.095:2	./.	./.	./.	./.	./.
chr7	100678421	rs10265276	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,30:31:81:0.370:2	./.	./.	./.	./.	./.
chr7	100678527	rs73402889	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,10:30:82:0.122:2	./.	./.	./.	./.	./.
chr7	100678560	rs77199586	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,7:31:70:0.100:2	./.	./.	./.	./.	./.
chr7	100678568	rs75492258	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,8:31:71:0.113:2	./.	./.	./.	./.	./.
chr7	100678616	rs113959201	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,5:28:64:0.078:2	./.	./.	./.	./.	./.
chr7	100678622	rs77299546	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,6:30:64:0.094:2	./.	./.	./.	./.	./.
chr7	100678693	rs78176991	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,9:31:76:0.118:2	./.	./.	./.	./.	./.
chr7	100678695	rs147179553	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:32:85:0.047:2	./.	./.	./.
chr7	100678724	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:32:79:0.051:2	./.	./.	./.
chr7	100678740	rs4269454	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,35:29:73:0.479:2	./.	./.	./.	./.	./.
chr7	100678820	rs4367469	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,39:30:75:0.520:2	./.	./.	./.	./.	./.
chr7	100679136	rs7780935	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,33:33:66:0.500:2	./.	./.	./.	./.	./.
chr7	100679296	rs73168392	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,15:31:116:0.129:2	./.	./.	./.	./.	./.
chr7	100679316	rs199509433	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,12:31:116:0.103:2	./.	./.	./.	./.	./.
chr7	100679318	rs200823544	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,12:31:115:0.104:2	./.	./.	./.	./.	./.
chr7	100679366	rs74209688	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:35,41:33:76:0.539:2	0/1:21,30:32:51:0.588:2	./.	0/1:1,107:33:108:0.991:2	./.	0/1:78,61:33:139:0.439:2	./.	./.	./.	./.	0/1:48,61:34:109:0.560:2
chr7	100679388	rs142741280	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:32:137:0.029:2	./.	./.	./.	./.	./.
chr7	100679594	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:32:38:0.079:2	./.	./.	./.	./.
chr7	100679752	rs4992072	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,18:31:67:0.269:2	./.	./.	./.	./.	./.
chr7	100679754	rs4992073	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,18:32:67:0.269:2	./.	./.	./.	./.	0/1:50,3:34:53:0.057:2
chr7	100679809	rs4992074	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,32:32:74:0.432:2	./.	./.	./.	./.	./.
chr7	100679902	rs55974941	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,34:33:56:0.607:2	0/1:17,25:33:42:0.595:2	0/1:12,3:33:15:0.200:2	0/1:0,63:33:63:1.00:2	0/1:24,16:32:40:0.400:2	0/1:25,25:32:50:0.500:2	0/1:27,11:33:38:0.289:2	0/1:34,24:31:58:0.414:2	./.	./.	0/1:16,36:33:52:0.692:2
chr7	100680031	rs139275375	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:31:78:0.051:2	./.	./.	./.	./.	./.
chr7	100680100	rs142682652	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,21:31:122:0.172:2	./.	./.	./.	./.	./.
chr7	100680117	rs147353603	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,20:29:129:0.155:2	./.	./.	./.	./.	./.
chr7	100680120	rs147991653	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,18:31:127:0.143:2	./.	./.	./.	./.	./.
chr7	100680137	rs73712042	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:32:117:0.034:2	./.	./.	./.	./.	./.
chr7	100680273	.	C	T,A	.	PASS	AC=3,1;AF=0.250,0.083;AN=12;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	0/2:33:90:0.046:2	0/1:33:54:0.074:2	./.	0/1:31:102:0.039:2	./.	./.	./.	./.	./.	./.	0/1:32:99:0.040:2
chr7	100680370	rs10257974	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,47:32:117:0.402:2	./.	./.	./.	./.	./.
chr7	100680939	rs36120435	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,26:31:61:0.426:2	./.	./.	./.	./.	./.
chr7	100680983	rs28593004	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,21:31:54:0.389:2	./.	./.	./.	./.	./.
chr7	100681172	rs28555173	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,43:28:80:0.538:2	./.	./.	./.	./.	./.
chr7	100681211	rs147094151	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,38:32:78:0.487:2	./.	./.	./.	./.	./.	./.	0/1:53,33:33:86:0.384:2
chr7	100681221	rs147785825	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,35:32:76:0.461:2	./.	./.	./.	./.	./.	./.	0/1:54,35:33:89:0.393:2
chr7	100681266	rs142126972	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,9:31:95:0.095:2	./.	./.	./.	./.	./.
chr7	100681293	rs141217694	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,9:31:94:0.096:2	./.	./.	./.	./.	./.
chr7	100681297	rs148847871	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,6:30:91:0.066:2	./.	./.	./.	./.	./.
chr7	100681303	rs143516283	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,5:32:85:0.059:2	./.	./.	./.	./.	./.
chr7	100681345	rs142097516	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:32:90:0.044:2	./.	./.	./.	./.	./.
chr7	100681359	rs11979706	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,35:30:78:0.449:2	0/1:35,19:29:54:0.352:2	./.	0/1:0,113:30:113:1.00:2	0/1:56,33:29:89:0.371:2	0/1:3,80:29:84:0.964:2	0/1:37,37:28:74:0.500:2	0/1:46,40:29:86:0.465:2	./.	./.	0/1:42,43:30:85:0.506:2
chr7	100681762	rs10953316	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:54,41:30:95:0.432:2	0/1:31,22:30:53:0.415:2	./.	0/1:4,63:29:67:0.940:2	0/1:24,25:28:49:0.510:2	0/1:0,79:29:79:1.00:2	0/1:39,20:29:59:0.339:2	0/1:44,35:29:79:0.443:2	./.	./.	0/1:33,34:29:67:0.507:2
chr7	100682045	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:31:111:0.036:2	./.	./.	./.	./.
chr7	100682046	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:31:114:0.035:2	./.	./.	./.	./.
chr7	100682068	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:31:123:0.033:2	./.	./.	./.	./.
chr7	100682275	rs4386914	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,38:29:94:0.404:2	./.	./.	./.	./.	./.
chr7	100682571	rs142739196	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,8:32:53:0.151:2	0/1:14,9:30:23:0.391:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	100682589	rs147386963	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,6:32:46:0.130:2	0/1:16,5:32:21:0.238:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	100682597	rs137868062	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,5:33:45:0.111:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	100682814	rs201007776	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,5:32:68:0.074:2	./.	./.	./.	./.	./.
chr7	100682831	rs34223735	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,8:27:79:0.101:2	./.	./.	./.	./.	./.
chr7	100682843	rs34924040	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,10:32:75:0.133:2	./.	./.	./.	./.	./.
chr7	100683036	rs78879527	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,9:31:106:0.085:2	./.	./.	./.	./.	./.
chr7	100683053	rs200821451	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:31:102:0.039:2	./.	./.	./.	./.	./.
chr7	100683233	rs151242026	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:32:116:0.034:2	./.	./.	./.
chr7	100683337	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,3:32:22:0.136:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	100683565	rs146122067	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:31:88:0.046:2	./.	./.	./.
chr7	100683592	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:32:79:0.051:2	./.	./.	./.
chr7	100683822	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:30:76:0.053:2	./.	./.	./.	./.	./.
chr7	100684026	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,22:31:65:0.344:2	./.	./.	./.	./.	./.	./.	./.
chr7	100684077	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:34:69:0.058:2	./.
chr7	100684149	rs201455288	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,3:32:22:0.136:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	100684550	rs35090328	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,46:32:123:0.377:2	./.	./.	./.	./.	./.
chr7	100684573	rs144023476	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:32:116:0.034:2	./.	./.	./.	./.	./.
chr7	100684593	rs35988443	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,36:30:92:0.391:2	./.	./.	./.	./.	./.
chr7	100685101	rs138000542	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,4:35:80:0.050:2	./.	./.	./.	./.	./.	./.	./.
chr7	100685281	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,22:34:55:0.400:2	./.	./.
chr7	100692680	rs10246021	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,52:31:100:0.520:2	0/1:26,24:30:50:0.480:2	0/1:12,5:30:17:0.294:2	0/1:0,122:30:122:1.00:2	0/1:64,55:29:119:0.462:2	0/1:0,106:30:106:1.00:2	0/1:73,67:30:140:0.479:2	0/1:76,79:29:155:0.510:2	./.	./.	0/1:60,58:29:118:0.492:2
chr7	100693849	rs6978780	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:42,53:33:95:0.558:2	0/1:22,20:32:42:0.476:2	./.	0/1:1,110:33:111:0.991:2	./.	0/1:56,45:32:101:0.446:2	./.	./.	./.	./.	0/1:71,59:32:130:0.454:2
chr7	100695138	rs73168398	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,56:31:100:0.560:2	./.	./.	./.	./.	./.
chr7	100699525	rs147613804	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,36:33:93:0.387:2	./.	./.	./.	./.	./.	./.	./.
chr7	100731184	rs36064566	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,22:30:32:0.688:2	./.	./.	./.	./.	./.	./.	0/1:5,5:31:10:0.500:2
chr7	100731748	rs61730718	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,8:33:19:0.421:2	0/1:3,16:33:19:0.842:2	./.	./.	./.	./.	./.	./.	0/1:16,18:31:34:0.529:2	0/1:6,11:33:17:0.647:2	./.
chr7	100731829	rs6948536	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,13:29:13:1.00:2	0/1:0,8:28:8:1.00:2	./.	0/1:0,25:28:25:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,13:29:13:1.00:2	0/1:8,6:25:14:0.429:2	0/1:7,12:28:19:0.632:2	0/1:8,12:29:20:0.600:2	0/1:8,6:30:15:0.429:2	0/1:0,15:30:15:1.00:2
chr7	100731896	rs61730716	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,10:33:17:0.588:2	0/1:4,5:32:9:0.556:2	./.	./.	./.	./.	./.	./.	0/1:10,13:33:23:0.565:2	0/1:10,10:33:20:0.500:2	./.
chr7	100732321	rs11760747	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.
chr7	100732753	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,22:31:55:0.400:2	./.	./.	./.	./.	./.	./.
chr7	100733100	rs11761638	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,27:30:53:0.509:2	0/1:12,17:32:29:0.586:2	0/1:1,3:31:4:0.750:2	0/1:0,51:30:51:1.00:2	0/1:1,31:29:32:0.969:2	0/1:0,44:29:44:1.00:2	0/1:25,18:30:43:0.419:2	0/1:28,21:30:49:0.429:2	./.	./.	0/1:0,45:30:45:1.00:2
chr7	100733345	rs10230363	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,17:30:35:0.486:2	0/1:8,9:32:17:0.529:2	./.	./.	./.	./.	./.	./.	0/1:18,14:32:32:0.438:2	0/1:11,9:31:20:0.450:2	./.
chr7	100733565	rs10900	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,28:30:63:0.444:2	0/1:13,19:30:32:0.594:2	./.	./.	./.	./.	./.	./.	0/1:41,36:30:77:0.468:2	0/1:31,26:31:57:0.456:2	./.
chr7	100771717	rs6092	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,32:31:61:0.525:2	./.	./.	./.	./.	./.
chr7	100817901	rs34985488	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,16:31:41:0.390:2	./.	./.	./.	./.	./.	0/1:14,24:32:38:0.632:2
chr7	100818028	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,5:32:14:0.357:2	./.	./.	./.
chr7	100839616	rs142441388	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:32:141:0.028:2	./.	./.
chr7	100842036	rs145975332	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,21:32:42:0.500:2	./.
chr7	100859234	rs35159414	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:101,92:31:193:0.477:2	./.	./.	./.	./.	./.	./.
chr7	100861452	rs11769624	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:36,28:33:64:0.438:2	0/1:23,24:33:47:0.511:2	0/1:3,6:33:9:0.667:2	./.	0/1:66,51:32:117:0.436:2	0/1:46,41:32:87:0.471:2	./.	0/1:83,96:32:179:0.536:2	0/1:52,61:33:113:0.540:2	./.	0/1:1,134:33:135:0.993:2
chr7	100875772	rs1047319	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:9,9:27:18:0.500:2	0/1:6,6:29:12:0.500:2	0/1:1,4:31:5:0.800:2	./.	0/1:22,20:30:42:0.476:2	0/1:25,12:30:37:0.324:2	./.	0/1:17,12:31:29:0.414:2	0/1:20,12:32:32:0.375:2	./.	0/1:0,23:31:23:1.00:2
chr7	100887319	rs148532612	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,59:29:112:0.527:2	./.	./.	./.	./.
chr7	100958442	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:32:81:0.049:2	./.
chr7	101006339	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	101006376	rs4989267	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,4:32:4:1.00:2	./.	0/1:0,2:32:2:1.00:2	./.	./.	0/1:7,11:32:18:0.611:2	./.	0/1:0,16:31:16:1.00:2	0/1:3,9:32:12:0.750:2	0/1:4,8:31:12:0.667:2	0/1:3,8:30:11:0.727:2
chr7	101006382	rs4989266	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,4:32:4:1.00:2	./.	0/1:0,2:32:2:1.00:2	./.	./.	0/1:7,11:31:18:0.611:2	./.	0/1:0,14:31:14:1.00:2	0/1:2,9:31:11:0.818:2	0/1:4,8:29:12:0.667:2	0/1:3,8:31:11:0.727:2
chr7	101194424	rs17135626	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,41:32:121:0.342:2	0/1:79,60:32:139:0.432:2	0/1:71,65:31:136:0.478:2	0/1:2,100:32:102:0.980:2	0/1:70,69:32:139:0.496:2	./.	./.	0/1:39,37:33:76:0.487:2
chr7	101200727	rs17393069	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,35:30:74:0.473:2	0/1:72,37:30:109:0.339:2	0/1:1,86:30:87:0.989:2	./.	./.	0/1:0,85:31:87:1.00:2	0/1:23,30:30:54:0.566:2	0/1:28,27:30:55:0.491:2
chr7	101200765	rs17471501	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,29:32:52:0.558:2	0/1:29,53:32:82:0.646:2	./.	0/1:43,43:31:86:0.500:2	0/1:0,90:32:90:1.00:2	./.	./.	./.
chr7	101256833	rs2240389	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:56,60:28:116:0.517:2	0/1:21,51:29:72:0.708:2	./.	./.	0/1:52,39:28:91:0.429:2	0/1:52,69:28:121:0.570:2	./.	./.	./.	0/1:60,50:30:110:0.455:2	0/1:71,63:30:134:0.470:2
chr7	101755060	rs9655774	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,32:30:66:0.485:2	0/1:14,18:32:32:0.563:2	0/1:2,4:31:6:0.667:2	0/1:39,39:32:78:0.500:2	0/1:1,93:32:94:0.989:2	./.	./.	./.	0/1:38,45:32:83:0.542:2	0/1:27,27:32:54:0.500:2	./.
chr7	101837149	rs11540899	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,19:32:47:0.404:2	0/1:13,11:33:24:0.458:2	0/1:0,2:33:2:1.00:2	0/1:26,27:32:53:0.509:2	0/1:42,37:32:79:0.468:2	./.	0/1:36,20:32:56:0.357:2	./.	0/1:32,22:32:54:0.407:2	0/1:15,17:30:32:0.531:2	./.
chr7	101840467	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:31:68:0.059:2	./.	./.
chr7	101844851	rs60987662	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,33:31:60:0.559:2	0/1:11,20:31:31:0.645:2	0/1:0,13:31:13:1.00:2	0/1:44,44:30:88:0.500:2	0/1:74,41:31:115:0.357:2	./.	0/1:67,39:30:106:0.368:2	0/1:54,54:30:109:0.500:2	./.	./.	./.
chr7	101891703	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:30:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	101916647	rs813000	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:28:31:1.00:2	0/1:0,27:29:27:1.00:2	0/1:6,5:28:11:0.455:2	0/1:0,44:28:44:1.00:2	0/1:0,64:27:64:1.00:2	0/1:44,25:27:69:0.362:2	0/1:42,42:28:84:0.500:2	0/1:0,87:28:87:1.00:2	0/1:0,58:29:58:1.00:2	0/1:22,14:26:36:0.389:2	0/1:32,31:27:63:0.492:2
chr7	101917521	rs803064	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,12:32:29:0.414:2	0/1:5,12:32:17:0.706:2	./.	0/1:29,20:32:49:0.408:2	0/1:32,20:31:52:0.385:2	0/1:25,14:31:39:0.359:2	./.	./.	0/1:23,25:33:48:0.521:2	0/1:11,12:31:23:0.522:2	./.
chr7	101921289	rs2230103	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,98:28:195:0.503:2	./.	./.	./.
chr7	101928495	rs803074	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:32:45:1.00:2	0/1:0,30:32:30:1.00:2	0/1:3,6:33:9:0.667:2	0/1:0,70:31:70:1.00:2	0/1:1,62:32:63:0.984:2	0/1:54,59:33:113:0.522:2	0/1:57,55:32:112:0.491:2	0/1:5,126:32:131:0.962:2	0/1:1,76:32:77:0.987:2	0/1:50,37:32:87:0.425:2	0/1:51,41:32:92:0.446:2
chr7	101988834	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:170,5:27:175:0.029:2	0/1:179,10:29:189:0.053:2	./.	./.	0/1:169,23:31:192:0.120:2	./.	0/1:188,5:31:193:0.026:2	./.	./.	./.	0/1:175,12:32:188:0.064:2
chr7	101988839	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:173,6:29:179:0.034:2	0/1:179,8:28:187:0.043:2	./.	./.	0/1:172,18:29:190:0.095:2	./.	./.	./.	./.	./.	0/1:179,11:30:190:0.058:2
chr7	101988863	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:152,22:31:175:0.126:2	0/1:157,23:30:180:0.128:2	./.	./.	./.	0/1:185,4:33:189:0.021:2	./.	0/1:176,17:32:193:0.088:2	./.	./.	0/1:172,15:29:187:0.080:2
chr7	101988870	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,19:33:193:0.098:2	0/1:141,46:32:187:0.246:2	./.
chr7	101988909	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:171,7:30:179:0.039:2	0/1:152,10:28:162:0.062:2	./.	./.	0/1:187,7:24:194:0.036:2	./.	0/1:185,5:31:190:0.026:2	0/1:186,5:30:192:0.026:2	0/1:186,8:31:194:0.041:2	0/1:190,5:31:195:0.026:2	0/1:175,12:25:187:0.064:2
chr7	101988914	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:177,7:30:184:0.038:2	0/1:152,13:30:165:0.079:2	./.	./.	0/1:178,5:30:183:0.027:2	./.	./.	./.	0/1:181,9:32:190:0.047:2	./.	0/1:175,10:31:185:0.054:2
chr7	101988983	rs202078839	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:181,15:32:196:0.077:2	0/1:181,4:34:185:0.022:2	0/1:187,6:34:193:0.031:2	0/1:169,18:33:187:0.096:2	0/1:168,25:34:193:0.130:2	0/1:171,21:32:192:0.109:2	0/1:166,21:32:187:0.112:2
chr7	102098010	rs41275227	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,22:25:22:1.00:2	0/1:0,20:28:20:1.00:2	./.	./.	./.	0/1:8,22:27:30:0.733:2	./.	./.	./.	./.	0/1:1,8:30:9:0.889:2
chr7	102106605	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,19:32:147:0.129:2	./.
chr7	102108532	rs73189880	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,12:27:29:0.414:2	0/1:7,11:32:18:0.611:2	./.	./.	./.	0/1:20,25:30:45:0.556:2	./.	./.	./.	./.	0/1:11,19:30:30:0.633:2
chr7	102108770	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,35:29:63:0.556:2	./.	./.	./.	./.	./.	./.
chr7	102112980	rs3800987	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:33:3:1.00:2	0/1:0,4:31:4:1.00:2	./.	0/1:0,4:31:4:1.00:2	0/1:0,7:32:7:1.00:2	./.	0/1:0,4:32:4:1.00:2	./.
chr7	102113226	rs148981077	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,20:32:45:0.444:2	0/1:11,16:32:27:0.593:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	102114087	rs2229796	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,30:32:60:0.500:2	0/1:15,18:33:33:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	102114090	rs1131359	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,21:33:44:0.477:2	./.	./.
chr7	102114838	rs148023737	A	G,C	.	PASS	AC=3,2;AF=0.200,0.133;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant10-variant11	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	0/2:33:190:0.095:2	0/2:31:175:0.131:2	0/1:29:54:0.148:2	./.	./.	./.	0/1:27:196:0.118:2	./.	0/1:30:193:0.068:2	./.	./.
chr7	102114890	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:72,5:25:77:0.065:2	0/1:169,9:33:178:0.051:2	./.	0/1:171,24:32:195:0.123:2	./.	./.	./.	./.	./.
chr7	102114955	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:33:150:0.027:2	./.	./.
chr7	102116666	rs138574638	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:95,26:32:121:0.215:2	0/1:183,13:34:196:0.066:2	./.	0/1:182,13:32:195:0.067:2	0/1:178,22:33:200:0.110:2	0/1:186,9:32:195:0.046:2	0/1:174,24:33:198:0.121:2	0/1:194,4:33:198:0.020:2	./.
chr7	102116678	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:146,51:33:197:0.259:2	0/1:164,35:33:199:0.176:2	0/1:124,9:33:133:0.068:2	0/1:190,6:31:196:0.031:2	0/1:191,6:32:197:0.030:2	0/1:154,43:34:197:0.218:2	0/1:163,37:33:200:0.185:2	0/1:191,6:32:197:0.030:2	0/1:183,12:33:195:0.062:2	0/1:187,9:33:196:0.046:2	0/1:182,11:35:194:0.057:2
chr7	102119234	rs201469208	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:31:99:0.040:2	./.	./.	./.	./.	./.
chr7	102119322	rs1131325	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:29:11:1.00:2	0/1:8,67:28:75:0.893:2	0/1:2,94:28:96:0.979:2	0/1:72,25:28:97:0.258:2	0/1:4,54:27:58:0.931:2	0/1:0,60:28:60:1.00:2	0/1:44,25:29:69:0.362:2	0/1:0,33:28:33:1.00:2	0/1:29,25:27:54:0.463:2
chr7	102124103	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:24:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	102124308	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,5:31:6:0.833:2	0/1:8,5:31:13:0.385:2	./.	./.	./.	0/1:20,3:31:23:0.130:2	0/1:17,3:33:20:0.150:2	./.	./.
chr7	102125519	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,28:32:195:0.144:2	0/1:173,23:33:196:0.117:2	./.	0/1:177,18:33:196:0.092:2	./.	./.
chr7	102125543	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:43,4:27:47:0.085:2	0/1:158,35:29:193:0.181:2	0/1:163,36:28:199:0.181:2	0/1:178,13:28:191:0.068:2	0/1:172,24:28:196:0.122:2	0/1:149,40:29:190:0.212:2	./.	./.	0/1:168,17:29:186:0.092:2
chr7	102125577	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,19:32:150:0.127:2	./.	./.
chr7	102125585	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:34,4:32:38:0.105:2	0/1:166,22:32:188:0.117:2	./.	0/1:115,66:32:181:0.365:2	0/1:149,34:33:183:0.186:2	./.	./.	./.	./.
chr7	102128972	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:172,15:31:187:0.080:2	./.	./.	./.	./.	./.	./.	./.
chr7	102133576	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,12:32:116:0.103:2	./.	./.	0/1:156,15:31:171:0.088:2	0/1:110,18:32:128:0.141:2	./.	./.	0/1:105,5:33:110:0.045:2
chr7	102133703	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,10:30:115:0.087:2	./.	./.	0/1:124,9:29:133:0.068:2	0/1:124,9:30:133:0.068:2	./.	./.	./.
chr7	102133720	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,12:29:88:0.136:2	0/1:60,14:28:74:0.189:2	./.	./.	./.	0/1:146,10:25:156:0.064:2	./.	./.	./.	./.	0/1:79,7:28:86:0.081:2
chr7	102133728	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,5:30:81:0.062:2	0/1:62,6:31:68:0.088:2	./.	./.	./.	0/1:137,8:28:145:0.055:2	./.	./.	./.	./.	0/1:74,6:32:80:0.075:2
chr7	102134988	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,3:31:14:0.214:2	0/1:10,3:31:13:0.231:2	0/1:23,3:32:26:0.115:2	./.	./.	./.	./.	./.
chr7	102135806	rs377051321	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:149,36:31:185:0.195:2	0/1:108,28:30:136:0.206:2	0/1:23,9:31:32:0.281:2	0/1:147,32:31:179:0.179:2	0/1:144,25:29:169:0.148:2	0/1:190,7:28:197:0.036:2	0/1:163,34:31:197:0.173:2	0/1:137,41:30:178:0.230:2	0/1:110,24:32:134:0.179:2	0/1:101,23:29:125:0.185:2	0/1:134,10:30:144:0.069:2
chr7	102136604	rs746316	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,7:33:191:0.037:2	./.	0/1:172,19:33:191:0.099:2	0/1:186,9:33:195:0.046:2	0/1:193,5:34:198:0.025:2	0/1:190,6:33:196:0.031:2	0/1:186,6:33:192:0.031:2	0/1:190,6:33:196:0.031:2
chr7	102136922	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,11:31:182:0.060:2	0/1:169,18:31:187:0.096:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	102141570	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,20:28:43:0.465:2	0/1:150,43:27:193:0.223:2	./.	0/1:145,48:27:193:0.249:2	0/1:174,20:28:194:0.103:2	./.	0/1:161,33:26:194:0.170:2	0/1:167,26:26:193:0.135:2	./.
chr7	102141600	rs199949668	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:156,29:31:185:0.157:2	./.	./.	0/1:169,26:32:195:0.133:2	0/1:162,30:32:192:0.156:2	./.	./.	0/1:153,38:31:191:0.199:2
chr7	102143610	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,37:32:191:0.195:2	0/1:155,31:32:186:0.167:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	102147148	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:33:5:1.00:2	0/1:18,6:34:24:0.250:2	./.	0/1:13,17:30:30:0.567:2	0/1:9,4:31:13:0.308:2	./.	./.	./.	./.
chr7	102147246	rs150864914	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:31:35:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,47:30:48:1.00:2	0/1:0,40:29:40:1.00:2	0/1:0,84:30:84:1.00:2	0/1:1,33:29:34:0.971:2	0/1:0,55:29:55:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,14:29:14:1.00:2
chr7	102150122	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:155,12:31:167:0.072:2	0/1:168,11:30:179:0.061:2	0/1:53,10:32:63:0.159:2	./.	0/1:152,10:31:162:0.062:2	0/1:139,49:31:188:0.261:2	0/1:130,41:31:171:0.240:2	0/1:131,19:32:150:0.127:2	0/1:152,29:33:181:0.160:2	0/1:147,23:31:170:0.135:2	0/1:131,39:31:171:0.229:2
chr7	102201151	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.
chr7	102201175	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,5:30:140:0.036:2	./.	./.	./.
chr7	102201181	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,15:31:104:0.144:2	0/1:171,14:32:185:0.076:2	0/1:159,20:31:179:0.112:2	0/1:154,17:33:171:0.099:2	0/1:84,14:33:98:0.143:2	0/1:81,18:32:99:0.182:2	0/1:180,9:31:189:0.048:2
chr7	102201250	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:177,7:29:185:0.038:2	./.	./.	./.	./.	0/1:181,6:33:187:0.032:2	./.
chr7	102201255	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:178,5:30:183:0.027:2	./.	./.	./.	./.	./.	./.
chr7	102201294	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,28:33:186:0.151:2	0/1:135,56:33:191:0.293:2	./.
chr7	102201301	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:149,30:32:179:0.168:2	0/1:152,26:31:179:0.146:2	./.	./.	./.	0/1:179,16:31:195:0.082:2	./.	0/1:171,14:31:185:0.076:2	./.	./.	0/1:168,19:31:189:0.102:2
chr7	102201325	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:182,13:29:195:0.067:2	./.	./.	./.	./.	./.	./.
chr7	102201330	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:182,14:32:196:0.071:2	./.	./.	./.	./.	0/1:189,5:31:194:0.026:2	./.
chr7	102210320	rs146014961	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:114,81:33:195:0.415:2	0/1:185,14:34:199:0.070:2	./.	0/1:179,21:34:200:0.105:2	0/1:165,33:34:198:0.167:2	0/1:180,19:33:199:0.095:2	0/1:148,47:34:195:0.241:2	0/1:168,31:34:199:0.156:2	./.
chr7	102210332	rs369858585	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:129,60:33:190:0.317:2	0/1:123,75:33:198:0.379:2	0/1:174,10:33:184:0.054:2	0/1:187,10:33:197:0.051:2	0/1:182,15:33:197:0.076:2	0/1:153,40:34:193:0.207:2	0/1:147,46:34:193:0.238:2	0/1:179,17:33:196:0.087:2	0/1:177,19:34:196:0.097:2	0/1:179,17:32:196:0.087:2	0/1:177,11:33:188:0.059:2
chr7	102212939	rs139049967	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:128,59:30:187:0.316:2	0/1:160,14:31:174:0.080:2	0/1:172,13:31:185:0.070:2	0/1:150,32:31:182:0.176:2	0/1:152,40:33:192:0.208:2	0/1:117,31:30:149:0.209:2	0/1:91,88:30:179:0.492:2
chr7	102223282	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:29:6:0.667:2	./.	./.	./.
chr7	102223487	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:24:5:0.800:2	0/1:15,8:31:23:0.348:2	0/1:14,3:30:17:0.176:2	0/1:32,3:33:35:0.086:2	./.	0/1:17,4:31:21:0.190:2	./.	./.	./.
chr7	102224698	rs201206752	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,22:33:196:0.112:2	0/1:172,20:34:192:0.104:2	./.	0/1:166,20:34:187:0.108:2	./.	./.
chr7	102224722	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:43,8:28:51:0.157:2	0/1:157,34:28:191:0.178:2	0/1:151,42:29:194:0.218:2	0/1:191,7:27:198:0.035:2	0/1:175,19:29:194:0.098:2	0/1:162,34:29:196:0.173:2	./.	./.	0/1:173,13:30:186:0.070:2
chr7	102224756	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,19:32:186:0.102:2	./.	./.
chr7	102224764	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:37,8:33:45:0.178:2	0/1:171,24:32:195:0.123:2	./.	0/1:104,83:32:187:0.444:2	0/1:147,46:32:193:0.238:2	./.	./.	./.	./.
chr7	102228144	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:166,17:31:183:0.093:2	./.	./.	./.	./.	./.	./.	./.
chr7	102232745	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,9:31:99:0.091:2	./.	./.	0/1:158,19:31:177:0.107:2	0/1:128,15:31:143:0.105:2	./.	./.	0/1:80,18:33:98:0.184:2
chr7	102232872	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,9:30:120:0.075:2	./.	./.	0/1:116,9:31:125:0.072:2	0/1:115,7:28:122:0.057:2	./.	./.	0/1:74,8:29:82:0.098:2
chr7	102232889	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,15:28:99:0.152:2	0/1:57,8:28:65:0.123:2	./.	./.	./.	0/1:170,5:29:175:0.029:2	./.	./.	./.	./.	0/1:62,10:25:72:0.139:2
chr7	102232897	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:29:94:0.043:2	0/1:55,7:31:62:0.113:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,10:27:68:0.147:2
chr7	102234184	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,6:27:31:0.194:2	./.	./.	./.	./.	./.	./.	./.
chr7	102234975	rs372070045	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:148,37:29:185:0.200:2	0/1:118,36:30:154:0.234:2	0/1:31,5:31:36:0.139:2	0/1:130,38:30:168:0.226:2	0/1:119,26:31:145:0.179:2	0/1:184,9:30:193:0.047:2	0/1:167,26:30:193:0.135:2	0/1:136,59:30:195:0.303:2	0/1:113,35:32:148:0.236:2	0/1:115,32:31:147:0.218:2	0/1:139,19:31:158:0.120:2
chr7	102235769	rs144395384	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:3,105:29:108:0.972:2	0/1:6,78:28:84:0.929:2	./.	./.	0/1:62,46:29:110:0.426:2	./.	0/1:168,24:31:192:0.125:2	0/1:125,62:29:187:0.332:2	0/1:142,46:30:188:0.245:2	0/1:158,37:29:195:0.190:2	0/1:146,48:29:194:0.247:2
chr7	102236087	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,9:32:181:0.050:2	0/1:186,8:31:194:0.041:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	102240731	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,17:27:35:0.486:2	0/1:145,43:26:188:0.229:2	./.	0/1:135,53:28:188:0.282:2	0/1:187,11:25:198:0.056:2	./.	0/1:168,27:28:195:0.138:2	0/1:155,34:24:189:0.180:2	./.
chr7	102240761	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:155,29:31:184:0.158:2	./.	./.	0/1:174,21:31:195:0.108:2	0/1:148,42:31:190:0.221:2	./.	./.	0/1:145,34:30:180:0.190:2
chr7	102242771	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,34:32:191:0.178:2	0/1:137,41:32:178:0.230:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	102246311	rs200132914	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,10:31:28:0.357:2	0/1:9,5:34:14:0.357:2	0/1:53,16:32:69:0.232:2	0/1:9,4:32:13:0.308:2	0/1:7,4:32:12:0.364:2	./.	0/1:11,3:32:14:0.214:2	./.
chr7	102246394	rs142342278	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,43:28:90:0.478:2	0/1:37,34:27:71:0.479:2	0/1:11,8:29:19:0.421:2	0/1:34,53:27:87:0.609:2	0/1:32,39:26:71:0.549:2	0/1:95,90:28:185:0.486:2	0/1:17,29:26:46:0.630:2	0/1:18,32:26:50:0.640:2	0/1:33,16:28:49:0.327:2	0/1:31,18:27:49:0.367:2	0/1:23,24:26:47:0.511:2
chr7	102249284	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:152,13:33:166:0.079:2	0/1:168,11:31:179:0.061:2	0/1:31,12:30:43:0.279:2	./.	0/1:157,12:31:169:0.071:2	0/1:162,29:31:191:0.152:2	0/1:146,37:30:183:0.202:2	0/1:139,20:31:159:0.126:2	0/1:151,21:31:172:0.122:2	0/1:149,24:31:173:0.139:2	0/1:129,48:31:177:0.271:2
chr7	102279207	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,7:27:99:0.071:2	0/1:82,7:28:89:0.079:2	./.	./.	./.	./.	./.	./.
chr7	102279621	rs201558735	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,16:31:40:0.400:2	0/1:168,20:31:189:0.106:2	./.	0/1:150,38:32:188:0.202:2	0/1:171,13:32:184:0.071:2	./.	0/1:145,36:33:181:0.199:2	./.	./.
chr7	102280780	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,8:31:194:0.041:2	./.	./.	./.	./.	./.
chr7	102280786	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:36,8:30:44:0.182:2	0/1:167,23:33:190:0.121:2	./.	0/1:163,26:34:189:0.138:2	./.	./.	./.	./.	./.
chr7	102281132	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,23:30:157:0.147:2	./.	./.	./.	./.	./.
chr7	102281142	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,18:30:68:0.265:2	0/1:38,11:31:49:0.224:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	102307479	rs199540216	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:90,19:29:109:0.174:2	0/1:50,5:30:55:0.091:2	./.	0/1:68,9:31:78:0.117:2	0/1:82,6:30:88:0.068:2	./.	./.	0/1:43,9:27:52:0.173:2	./.	./.	0/1:21,6:29:27:0.222:2
chr7	102307488	rs200789357	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,12:33:91:0.133:2	./.	0/1:128,46:31:174:0.264:2	./.	./.	./.	./.	./.
chr7	102307528	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,6:32:43:0.140:2	./.	./.	0/1:173,17:32:190:0.089:2	./.	./.	0/1:122,26:33:148:0.176:2	./.	./.
chr7	102307540	rs199905687	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,6:29:195:0.031:2	./.	./.	./.	./.	./.	0/1:187,6:31:193:0.031:2	0/1:186,6:29:192:0.031:2
chr7	102307567	rs149673224	A	G,C	.	PASS	AC=1,2;AF=0.111,0.222;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	0/2:33:182:0.602:2	0/2:31:186:0.632:2	0/1:29:81:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	102307619	rs201902185	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:83,12:30:95:0.126:2	0/1:176,14:30:191:0.074:2	./.	0/1:160,33:32:193:0.171:2	./.	./.	./.	./.	./.
chr7	102307684	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,5:33:199:0.025:2	./.	./.	./.	./.
chr7	102309400	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,5:33:26:0.192:2	./.	./.	./.	./.	./.	0/1:163,8:35:171:0.047:2	0/1:167,7:34:174:0.040:2	./.
chr7	102309418	rs74556368	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:123,70:32:193:0.363:2	0/1:119,80:31:199:0.402:2	0/1:0,14:31:14:1.00:2	0/1:2,83:31:85:0.976:2	0/1:2,97:31:99:0.980:2	0/1:5,178:30:183:0.973:2	0/1:0,174:31:174:1.00:2	0/1:5,114:32:119:0.958:2	0/1:0,114:33:114:1.00:2	0/1:2,114:31:116:0.983:2	0/1:130,64:31:194:0.330:2
chr7	102311972	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:179,8:27:187:0.043:2	0/1:0,5:26:5:1.00:2	./.	0/1:184,7:25:191:0.037:2	./.	./.	./.
chr7	102312019	rs149263302	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:157,17:31:174:0.098:2	0/1:165,14:31:179:0.078:2	0/1:166,12:31:178:0.067:2	0/1:160,16:32:176:0.091:2	0/1:164,12:30:176:0.068:2	0/1:158,20:30:178:0.112:2	0/1:126,16:31:142:0.113:2
chr7	102389697	rs141352868	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,74:31:145:0.510:2	0/1:46,61:31:107:0.570:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,57:30:144:0.396:2
chr7	102389833	rs28695887	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,15:30:15:1.00:2	0/1:0,9:30:9:1.00:2	./.	0/1:1,13:26:14:0.929:2	0/1:0,17:27:17:1.00:2	0/1:0,20:28:20:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,18:28:18:1.00:2	0/1:0,7:28:7:1.00:2	0/1:0,12:28:12:1.00:2	0/1:0,3:27:3:1.00:2
chr7	102390020	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:43,24:33:67:0.358:2	0/1:23,10:32:33:0.303:2	./.	./.	./.	./.	0/1:99,25:32:124:0.202:2	./.	./.	./.	./.
chr7	102412901	rs2539288	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,13:29:34:0.382:2	0/1:107,61:29:168:0.363:2	./.	./.	./.	0/1:133,49:28:183:0.269:2	0/1:148,49:29:197:0.249:2	0/1:107,40:29:147:0.272:2	0/1:137,54:28:191:0.283:2
chr7	102417753	rs201667800	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:81,55:33:136:0.404:2	0/1:79,77:32:156:0.494:2	0/1:5,8:33:13:0.615:2	./.	./.	0/1:104,39:33:143:0.273:2	0/1:100,45:32:145:0.310:2	./.	./.	./.	./.
chr7	102427889	rs116082009	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,79:32:199:0.397:2	./.	./.	./.
chr7	102462636	rs10279449	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,31:30:61:0.508:2	./.	./.	./.	0/1:49,29:29:78:0.372:2	0/1:40,21:30:61:0.344:2	./.	./.
chr7	102524701	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,4:32:73:0.055:2	./.	./.	./.	./.	./.	./.	./.
chr7	102574715	rs3800939	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,35:33:78:0.449:2	./.	./.
chr7	102574920	rs1057066	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,16:25:39:0.410:2	./.	./.	./.	./.	./.	./.	./.
chr7	102579950	rs185173034	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,5:33:6:0.833:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	102665620	rs61749912	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,35:33:68:0.515:2	./.	./.
chr7	102668001	rs7805950	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:33:76:1.00:2	0/1:0,59:33:59:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,99:33:99:1.00:2	0/1:1,59:32:60:0.983:2	0/1:0,88:32:88:1.00:2	0/1:0,63:33:63:1.00:2	0/1:0,69:33:69:1.00:2	0/1:0,84:33:84:1.00:2
chr7	102738862	rs14029	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,50:29:197:0.254:2	./.	./.	./.
chr7	102743893	rs3181009	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,141:31:141:1.00:2	0/1:0,92:32:92:1.00:2	0/1:3,16:31:19:0.842:2	0/1:2,158:31:160:0.988:2	0/1:5,108:30:113:0.956:2	0/1:8,143:30:151:0.947:2	0/1:4,96:31:100:0.960:2	0/1:2,178:31:180:0.989:2	0/1:2,175:32:177:0.989:2	0/1:0,149:31:149:1.00:2	0/1:2,166:31:168:0.988:2
chr7	102743895	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:112,5:32:117:0.043:2	0/1:151,8:32:159:0.050:2	0/1:104,4:32:108:0.037:2	./.	./.	./.	./.
chr7	102743916	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:107,4:30:111:0.036:2	0/1:131,6:33:137:0.044:2	./.	./.	./.	./.	./.
chr7	102755545	rs149133622	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,31:31:84:0.369:2	./.	./.	./.	./.
chr7	102760511	rs12540583	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:30:14:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	102952123	rs3087615	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,55:32:111:0.495:2
chr7	102953035	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,4:32:106:0.038:2	./.	./.	./.	./.	./.	./.
chr7	103004674	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:32:107:0.037:2
chr7	103004693	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,5:30:121:0.041:2	./.	./.	./.
chr7	103004745	rs147608353	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:32:67:0.060:2	./.	./.	./.
chr7	103004749	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:33:62:0.065:2	./.	./.	./.
chr7	103007949	rs4520097	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:30:95:1.00:2	0/1:0,44:29:44:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,123:30:123:1.00:2	0/1:0,119:29:119:1.00:2	0/1:0,108:29:110:1.00:2	0/1:0,139:29:139:1.00:2	0/1:2,147:30:149:0.987:2	0/1:1,160:30:161:0.994:2	0/1:0,102:30:103:1.00:2	0/1:0,104:29:104:1.00:2
chr7	103113421	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:34:187:0.021:2	./.	./.
chr7	103141351	rs2229862	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,8:31:16:0.500:2	0/1:69,37:31:106:0.349:2	./.	./.	0/1:39,28:31:67:0.418:2	./.	./.	./.	./.
chr7	103155705	rs2229864	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,45:29:45:1.00:2	0/1:0,40:29:40:1.00:2	./.	0/1:43,35:29:78:0.449:2	./.	./.	./.	0/1:35,46:29:81:0.568:2	./.	./.	0/1:49,39:30:88:0.443:2
chr7	103155864	rs56345626	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,26:31:47:0.553:2	./.	./.	./.	0/1:43,9:28:52:0.173:2	./.	./.	./.
chr7	103162607	rs2075038	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,25:33:65:0.385:2	0/1:21,18:32:39:0.462:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,42:32:81:0.519:2
chr7	103163890	rs150236371	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,50:31:117:0.427:2	./.	./.	./.	./.	./.	./.	./.
chr7	103180872	rs2075043	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,11:30:21:0.524:2	0/1:9,6:31:15:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	103183187	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr7	103251161	rs362691	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,26:32:49:0.531:2	./.	./.
chr7	103252069	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,12:33:189:0.063:2	0/1:105,12:32:117:0.103:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	103292112	rs115734214	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,31:29:65:0.477:2	./.	./.	./.	./.	0/1:45,32:30:77:0.416:2
chr7	103293165	rs41276154	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,28:31:72:0.389:2	./.	./.
chr7	103389954	rs607755	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:33:56:1.00:2	0/1:0,48:32:48:1.00:2	0/1:7,5:32:12:0.417:2	0/1:1,53:32:54:0.981:2	0/1:32,13:32:45:0.289:2	0/1:0,59:32:59:1.00:2	0/1:1,53:31:54:0.981:2	0/1:25,21:32:46:0.457:2	./.	./.	0/1:0,60:33:60:1.00:2
chr7	103969365	rs74583671	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,69:31:162:0.426:2	./.	./.	./.
chr7	104717517	rs2240455	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:74,70:30:144:0.486:2	./.	0/1:0,117:30:117:1.00:2	0/1:0,144:30:144:1.00:2	./.	./.	0/1:85,60:31:145:0.414:2
chr7	104722137	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,3:31:36:0.083:2	./.	./.	./.	./.	./.	./.	./.
chr7	104742345	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:31:42:0.095:2	./.	./.	./.
chr7	104747899	rs117986340	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:30:6:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	104785779	rs7780887	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:30:57:1.00:2	0/1:0,26:29:26:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,69:31:69:1.00:2	0/1:16,19:30:35:0.543:2	0/1:0,74:29:74:1.00:2	./.	./.	0/1:0,73:30:73:1.00:2	0/1:1,44:31:45:0.978:2	0/1:38,40:30:78:0.513:2
chr7	104809688	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,4:29:19:0.211:2	./.	./.	./.	./.	./.
chr7	104809708	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,3:32:17:0.176:2	./.	./.	./.	./.	./.
chr7	105146481	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,26:32:77:0.338:2
chr7	105177041	rs11556986	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,67:32:113:0.593:2	./.	./.	0/1:67,112:32:179:0.626:2	./.	./.	./.
chr7	105182995	rs7805216	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,60:31:148:0.405:2	./.	./.	./.	./.	./.	./.
chr7	105183034	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:31:135:0.030:2	./.	./.
chr7	105205815	rs35531972	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,25:31:60:0.417:2	0/1:10,15:32:25:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	105207655	rs34310648	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,20:33:53:0.377:2	./.	./.
chr7	105254364	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:34:120:0.033:2	./.	./.
chr7	105429087	rs28927677	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,55:32:115:0.478:2	./.	./.	./.	./.
chr7	105615406	rs35008315	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,45:31:102:0.441:2	./.	0/1:93,48:32:141:0.340:2	0/1:62,68:31:130:0.523:2	./.
chr7	105615426	rs34426483	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,31:32:72:0.431:2	./.	0/1:75,31:33:106:0.292:2	0/1:50,56:33:107:0.528:2	./.
chr7	105621512	rs193795	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,57:32:110:0.518:2	0/1:33,17:31:50:0.340:2	0/1:6,12:30:18:0.667:2	0/1:75,47:31:122:0.385:2	0/1:56,52:31:108:0.481:2	./.	0/1:4,85:31:89:0.955:2	0/1:1,144:31:145:0.993:2	0/1:59,66:32:125:0.528:2	./.	0/1:77,57:32:134:0.425:2
chr7	105645049	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,4:31:148:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr7	105658370	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,4:27:17:0.235:2	./.
chr7	105658381	rs76067797	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,18:34:29:0.621:2	./.	./.
chr7	105658451	rs6967330	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:8,13:31:21:0.619:2	0/1:2,7:30:9:0.778:2	0/1:0,3:31:3:1.00:2	./.	./.	0/1:8,8:31:16:0.500:2	0/1:7,3:29:10:0.300:2	./.	0/1:14,12:32:26:0.462:2	0/1:6,4:32:10:0.400:2	./.
chr7	105658460	rs73195662	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,8:33:18:0.444:2	./.	./.	0/1:13,11:34:24:0.458:2	./.	./.
chr7	105662690	rs10258293	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:109,87:30:196:0.444:2	0/1:64,94:30:158:0.595:2	0/1:0,37:30:37:1.00:2	./.	./.	0/1:95,101:31:196:0.515:2	0/1:113,84:31:197:0.426:2	./.	0/1:98,99:32:197:0.503:2	0/1:105,87:31:192:0.453:2	./.
chr7	105672877	rs140818720	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,13:31:38:0.342:2	./.	./.	./.	./.	./.	./.	./.
chr7	105752670	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,4:31:95:0.042:2	./.	./.	./.	./.	./.	./.
chr7	105894870	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,5:30:181:0.028:2	./.	./.
chr7	105903904	rs2302559	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,168:31:169:0.994:2	0/1:1,95:30:96:0.990:2	0/1:0,13:30:13:1.00:2	./.	0/1:0,149:30:149:1.00:2	0/1:4,170:30:174:0.977:2	0/1:0,95:31:95:1.00:2	0/1:1,188:30:189:0.995:2	0/1:0,184:31:184:1.00:2	./.	./.
chr7	105903949	rs61747509	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,6:27:171:0.035:2	./.	./.	./.	./.
chr7	105903972	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,6:30:199:0.030:2	./.	./.	./.	./.
chr7	105909020	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,4:28:28:0.143:2	./.	./.	./.	./.	./.	./.
chr7	105913060	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,4:33:74:0.054:2	./.	./.	0/1:127,4:32:131:0.031:2	./.	./.	./.
chr7	105913102	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:33:69:0.058:2	./.	./.	./.
chr7	105915413	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:191,5:32:196:0.026:2	./.	./.	0/1:146,10:32:156:0.064:2	./.	./.	./.	./.
chr7	105915424	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,6:26:196:0.031:2	./.	./.	0/1:168,10:29:178:0.056:2	./.	./.	./.	./.
chr7	105925283	rs369623120	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,13:27:34:0.382:2	0/1:13,17:31:30:0.567:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	106508057	rs3729673	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,21:32:36:0.583:2	./.	./.
chr7	106508268	rs147631551	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,7:29:17:0.412:2	./.	./.	./.	./.	./.
chr7	106508978	rs849389	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:28:64:1.00:2	0/1:0,38:28:38:1.00:2	0/1:0,5:27:5:1.00:2	0/1:0,74:29:74:1.00:2	0/1:0,95:28:95:1.00:2	0/1:0,64:28:64:1.00:2	0/1:1,123:28:125:0.992:2	0/1:1,83:28:84:0.988:2	0/1:0,71:30:71:1.00:2	0/1:0,55:28:55:1.00:2	0/1:0,81:28:81:1.00:2
chr7	106508987	rs849390	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,61:28:62:0.984:2	0/1:0,42:30:42:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,117:30:117:1.00:2	0/1:0,66:29:66:1.00:2	0/1:0,145:29:145:1.00:2	0/1:0,100:30:100:1.00:2	0/1:1,78:30:79:0.987:2	0/1:0,58:30:59:1.00:2	0/1:0,82:29:82:1.00:2
chr7	106509571	rs61749915	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,35:31:85:0.417:2	./.	0/1:75,48:32:123:0.390:2	./.	./.	./.	./.
chr7	106513011	rs1129293	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:53,56:32:109:0.514:2	0/1:40,25:31:65:0.385:2	./.	0/1:61,46:32:107:0.430:2	0/1:67,32:30:99:0.323:2	./.	0/1:49,57:32:106:0.538:2	./.	0/1:91,68:32:160:0.428:2	0/1:67,64:32:131:0.489:2	0/1:83,76:32:159:0.478:2
chr7	106522592	rs28763991	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,24:32:63:0.381:2	./.	./.	./.	./.	./.	0/1:36,27:32:63:0.429:2
chr7	106685448	rs75385144	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,9:30:13:0.692:2	0/1:0,8:30:8:1.00:2	0/1:2,3:30:5:0.600:2	0/1:9,17:29:26:0.654:2	./.	./.	0/1:0,27:29:27:1.00:2	0/1:12,21:29:33:0.636:2	0/1:7,12:32:19:0.632:2	0/1:11,11:28:22:0.500:2	./.
chr7	106799997	rs257376	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:41,32:33:73:0.438:2	0/1:22,21:32:43:0.488:2	./.	0/1:43,51:32:94:0.543:2	0/1:1,72:32:73:0.986:2	0/1:0,94:31:94:1.00:2	0/1:68,35:32:103:0.340:2	0/1:70,29:32:99:0.293:2	0/1:67,47:33:114:0.412:2	0/1:39,44:32:83:0.530:2	0/1:0,90:32:90:1.00:2
chr7	106826381	rs201145168	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,26:32:65:0.400:2	./.	./.	0/1:23,13:32:36:0.361:2	./.	0/1:27,30:33:57:0.526:2	./.	./.
chr7	106876897	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:32:38:0.079:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	106888867	rs35581984	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,8:30:23:0.348:2	./.	./.	./.
chr7	106897237	rs17349904	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,15:32:28:0.536:2	./.	./.	0/1:11,13:27:24:0.542:2	./.	0/1:27,14:33:41:0.341:2	./.	./.
chr7	106938604	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:31:126:0.032:2	./.	./.	./.	./.	./.
chr7	106938638	rs35393416	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,10:31:24:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	107002504	rs34087251	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,4:28:19:0.211:2	./.	0/1:37,47:30:84:0.560:2	0/1:71,45:29:116:0.388:2	./.	./.	./.	./.	./.
chr7	107002806	rs2269970	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,65:33:128:0.508:2	0/1:47,40:32:87:0.460:2	0/1:9,20:32:29:0.690:2	0/1:104,90:33:194:0.464:2	0/1:0,146:32:146:1.00:2	0/1:0,157:32:157:1.00:2	0/1:85,73:33:158:0.462:2	./.	0/1:77,110:34:187:0.588:2	0/1:72,76:33:148:0.514:2	0/1:0,165:33:165:1.00:2
chr7	107188719	rs2066735	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:34,29:31:63:0.460:2	0/1:10,10:32:20:0.500:2	./.	./.	0/1:0,47:30:47:1.00:2	0/1:0,55:31:55:1.00:2	./.	./.	./.	0/1:38,14:31:52:0.269:2	0/1:1,67:31:68:0.985:2
chr7	107204348	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,37:31:75:0.493:2	0/1:24,16:30:40:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	107217020	rs6957510	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:32:9:0.444:2	./.	0/1:8,16:32:24:0.667:2	0/1:21,17:32:38:0.447:2	./.	./.	./.	./.	./.
chr7	107329543	rs180671153	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,44:30:92:0.478:2	./.	./.	./.	./.
chr7	107334855	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,6:32:195:0.031:2	./.	./.	./.	./.
chr7	107341637	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:30:77:0.052:2	./.	./.	./.
chr7	107398852	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,4:30:100:0.040:2	./.	./.	./.	./.	./.	./.
chr7	107406263	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	107414419	rs41669	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,135:29:135:1.00:2	0/1:0,65:28:65:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,119:29:119:1.00:2	0/1:0,131:28:131:1.00:2	0/1:2,144:28:146:0.986:2	0/1:0,106:29:106:1.00:2	0/1:1,140:29:141:0.993:2	0/1:0,162:29:162:1.00:2	0/1:0,109:29:109:1.00:2	0/1:0,165:28:165:1.00:2
chr7	107417081	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,3:35:66:0.045:2	./.	./.	./.	./.
chr7	107423254	rs3735605	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:39,18:29:57:0.316:2	0/1:14,13:31:27:0.481:2	./.	./.	0/1:25,34:30:59:0.576:2	./.	./.	0/1:33,41:30:74:0.554:2	0/1:27,34:31:61:0.557:2	0/1:28,22:31:50:0.440:2	0/1:35,28:29:64:0.444:2
chr7	107545910	rs61749952	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,26:31:48:0.542:2	./.	./.	./.	./.	./.	./.
chr7	107546813	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:113,4:32:117:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr7	107559722	rs8721	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,4:29:4:1.00:2	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	0/1:3,3:34:6:0.500:2	0/1:0,3:32:3:1.00:2	0/1:6,5:31:11:0.455:2
chr7	107569510	rs192862218	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,91:31:198:0.460:2	./.	./.	./.	./.	./.	./.	./.
chr7	107569517	rs1131398	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,184:33:185:0.995:2	0/1:3,86:32:89:0.966:2	0/1:20,19:32:39:0.487:2	0/1:106,90:33:196:0.459:2	0/1:111,85:32:197:0.434:2	0/1:89,104:32:194:0.539:2	./.	./.	0/1:98,95:34:193:0.492:2	0/1:119,71:32:190:0.374:2	0/1:107,86:33:193:0.446:2
chr7	107575866	rs11545309	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,65:32:140:0.464:2	./.	./.
chr7	107593989	rs20556	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,91:31:92:0.989:2	0/1:0,47:30:47:1.00:2	./.	0/1:0,86:31:86:1.00:2	0/1:68,39:31:107:0.364:2	0/1:57,41:30:98:0.418:2	0/1:76,50:30:126:0.397:2	./.	0/1:68,56:32:124:0.452:2	0/1:6,84:31:90:0.933:2	0/1:66,49:31:115:0.426:2
chr7	107599806	rs35710474	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:34,35:32:69:0.507:2	0/1:18,19:31:37:0.514:2	./.	./.	./.	./.	./.	./.	./.	0/1:40,39:32:79:0.494:2	./.
chr7	107602117	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:31:72:0.056:2	./.	./.	./.
chr7	107603431	rs2230156	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:39,33:29:72:0.458:2	0/1:19,10:27:29:0.345:2	./.	0/1:39,27:28:66:0.409:2	./.	0/1:37,29:29:66:0.439:2	./.	./.	0/1:46,29:30:75:0.387:2	./.	./.
chr7	107626770	rs25659	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:29,38:33:67:0.567:2	0/1:19,12:32:31:0.387:2	./.	./.	./.	./.	0/1:35,31:33:66:0.470:2	./.	./.	./.	./.
chr7	107671407	rs2528693	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,44:30:77:0.571:2	./.	./.	./.	./.	./.	./.
chr7	107677984	rs1627354	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,84:30:162:0.519:2	./.	./.	./.	./.	./.	./.
chr7	107735766	rs367669608	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:30:38:0.105:2
chr7	107738882	rs1735499	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,5:30:11:0.455:2	0/1:50,41:30:91:0.451:2	0/1:53,23:30:77:0.303:2	0/1:54,29:31:83:0.349:2	0/1:57,40:30:97:0.412:2	./.	0/1:79,48:31:127:0.378:2	./.	0/1:51,26:30:77:0.338:2
chr7	107738948	rs451252	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,8:32:17:0.471:2	0/1:61,52:33:113:0.460:2	0/1:58,28:32:86:0.326:2	0/1:64,50:33:114:0.439:2	0/1:68,64:33:132:0.485:2	./.	0/1:82,55:34:137:0.401:2	./.	0/1:48,47:33:95:0.495:2
chr7	107743664	rs402113	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:30:2:1.00:2	0/1:18,9:32:27:0.333:2	0/1:17,16:31:33:0.485:2	0/1:18,13:31:31:0.419:2	0/1:27,10:32:37:0.270:2	./.	0/1:12,14:32:26:0.538:2	./.	0/1:8,13:32:22:0.619:2
chr7	107800936	rs17155094	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,25:32:67:0.373:2	./.
chr7	107824678	rs6970656	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,25:32:53:0.472:2	0/1:19,23:33:42:0.548:2	0/1:0,20:33:20:1.00:2	0/1:0,94:33:94:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,76:31:76:1.00:2	0/1:0,58:33:58:1.00:2	0/1:41,25:30:66:0.379:2	0/1:0,86:32:86:1.00:2
chr7	107824889	rs401433	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,29:31:64:0.453:2	0/1:15,22:33:37:0.595:2	0/1:0,10:32:10:1.00:2	0/1:0,82:33:82:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,64:33:64:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,77:33:77:1.00:2	0/1:41,36:33:77:0.468:2	0/1:0,83:32:83:1.00:2
chr7	107831728	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:28:81:0.049:2	./.	./.
chr7	107834613	rs6958498	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,144:33:144:1.00:2	0/1:1,84:32:86:0.988:2	0/1:0,14:31:14:1.00:2	0/1:0,145:32:145:1.00:2	0/1:1,123:33:124:0.992:2	0/1:0,138:33:138:1.00:2	0/1:0,94:32:94:1.00:2	0/1:2,108:32:110:0.982:2	0/1:2,142:34:144:0.986:2	0/1:58,64:33:122:0.525:2	0/1:2,153:33:156:0.987:2
chr7	107834734	rs404287	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,179:33:180:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,182:31:182:1.00:2	0/1:0,101:32:101:1.00:2	0/1:1,183:31:184:0.995:2	0/1:0,137:32:137:1.00:2	0/1:4,190:32:194:0.979:2	0/1:0,182:32:182:1.00:2	0/1:107,89:32:196:0.454:2	0/1:0,167:33:167:1.00:2
chr7	107838464	rs381318	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,27:31:58:0.466:2	0/1:18,11:31:29:0.379:2	0/1:0,6:31:6:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,82:31:82:1.00:2	0/1:48,25:31:73:0.342:2	0/1:0,75:31:75:1.00:2
chr7	107849908	rs1269621	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:61,45:32:106:0.425:2	0/1:38,32:32:70:0.457:2	./.	0/1:1,86:32:87:0.989:2	./.	0/1:52,34:31:86:0.395:2	0/1:1,58:32:59:0.983:2	0/1:64,37:31:101:0.366:2	0/1:58,80:33:138:0.580:2	0/1:44,45:32:89:0.506:2	./.
chr7	107872816	rs2072546	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,63:31:138:0.457:2	./.	0/1:54,58:31:112:0.518:2	./.	0/1:92,66:32:158:0.418:2	./.	./.	./.
chr7	108128357	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:33:151:0.026:2
chr7	108205049	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,5:33:70:0.072:2	./.	./.	./.
chr7	108206396	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:29:74:0.054:2	./.	./.	./.	./.	./.
chr7	108206424	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:32:58:0.069:2	./.	./.	./.	./.	./.
chr7	108212353	rs1043615	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,62:33:63:0.984:2	0/1:1,37:32:38:0.974:2	0/1:0,5:33:5:1.00:2	0/1:18,22:33:40:0.550:2	0/1:24,32:32:57:0.571:2	./.	0/1:0,48:32:48:1.00:2	0/1:34,34:33:68:0.500:2	0/1:38,33:34:71:0.465:2	./.	0/1:0,88:33:88:1.00:2
chr7	108213362	rs61749954	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,18:31:35:0.514:2	./.
chr7	108524528	rs75599531	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,80:30:165:0.485:2	./.	./.	./.	./.
chr7	110762899	rs9942557	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,82:32:158:0.519:2
chr7	110765116	rs118008724	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,26:33:75:0.347:2	0/1:23,16:32:39:0.410:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	111423952	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:33:65:0.062:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	111512589	rs10257550	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,22:32:34:0.647:2	0/1:8,9:33:17:0.529:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	111981007	rs11539696	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,36:29:81:0.444:2	./.	./.	./.	./.	0/1:81,64:29:146:0.441:2
chr7	112096073	rs34349457	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,17:30:33:0.515:2	./.	./.	./.	./.
chr7	112101909	rs2708609	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,7:30:7:1.00:2	0/1:1,4:30:5:0.800:2	0/1:0,2:32:2:1.00:2	0/1:14,15:30:29:0.517:2	0/1:15,4:29:19:0.211:2	0/1:2,33:29:35:0.943:2	0/1:21,13:30:34:0.382:2	0/1:8,7:28:15:0.467:2	0/1:0,26:30:26:1.00:2	0/1:10,9:31:19:0.474:2	0/1:0,28:28:28:1.00:2
chr7	112102355	rs2253962	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:31:13:0.308:2	./.	./.	0/1:0,111:29:112:1.00:2	0/1:39,44:29:83:0.530:2	0/1:45,41:30:86:0.477:2	0/1:75,65:31:140:0.464:2	./.	0/1:2,132:30:134:0.985:2
chr7	112112279	rs2074796	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.	./.	0/1:0,52:32:52:1.00:2	0/1:23,15:32:38:0.395:2	0/1:19,24:33:43:0.558:2	0/1:39,37:33:76:0.487:2	./.	0/1:0,89:32:89:1.00:2
chr7	112407635	rs200760608	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,69:31:113:0.611:2
chr7	112424650	rs73205167	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,27:32:44:0.628:2	./.	./.	./.
chr7	112424786	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,4:32:31:0.129:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	112724417	rs2256044	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,66:33:67:0.985:2	0/1:1,29:32:30:0.967:2	0/1:0,11:33:11:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,87:33:87:1.00:2	0/1:0,79:33:79:1.00:2	0/1:0,71:34:71:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,62:33:62:1.00:2
chr7	112724525	rs1608890	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:33:52:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,25:33:25:1.00:2	./.	0/1:0,32:33:32:1.00:2	0/1:0,49:34:49:1.00:2
chr7	112724795	rs1575012	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:27:13:0.385:2	./.	./.	./.	./.	0/1:47,25:29:72:0.347:2	./.	0/1:22,20:30:42:0.476:2	./.
chr7	113518434	rs1799999	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,11:31:31:0.355:2	./.	./.	0/1:11,17:31:28:0.607:2	./.	./.	./.	./.
chr7	113518502	rs2974938	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,42:32:42:1.00:2	0/1:0,34:31:34:1.00:2	./.	0/1:0,26:31:26:1.00:2	0/1:0,31:31:31:1.00:2	0/1:14,18:31:32:0.563:2	0/1:0,25:31:25:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,63:32:63:1.00:2
chr7	113519267	rs35067467	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,42:33:88:0.477:2
chr7	113519719	rs2974944	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:32:79:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,36:31:36:1.00:2	0/1:1,97:31:98:0.990:2	0/1:0,34:32:34:1.00:2	0/1:0,100:31:100:1.00:2	0/1:0,83:32:83:1.00:2	0/1:1,100:32:101:0.990:2	0/1:0,141:31:141:1.00:2
chr7	113519796	rs2974942	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:31:61:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,54:31:54:1.00:2	0/1:36,50:31:86:0.581:2	0/1:0,42:31:42:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,92:33:92:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,102:32:102:1.00:2
chr7	113522313	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,10:31:24:0.417:2	./.	./.	./.	./.	./.
chr7	113522350	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,28:32:57:0.500:2
chr7	113558338	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,44:33:91:0.484:2	./.	./.	./.	./.	./.
chr7	114619598	rs2594449	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:32:50:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,59:31:60:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,78:32:78:1.00:2
chr7	115850810	rs199689967	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,6:30:21:0.286:2	./.	./.	./.	./.	./.
chr7	115890509	rs142057704	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,27:31:62:0.435:2	./.	./.	./.	./.	./.	./.	./.
chr7	115892476	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.
chr7	115897392	rs4710	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,109:31:109:1.00:2	0/1:1,104:30:105:0.990:2	./.	0/1:0,171:31:171:1.00:2	./.	0/1:73,83:30:156:0.532:2	./.	./.	./.	0/1:74,89:32:163:0.546:2	./.
chr7	116146074	rs8940	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,32:32:32:1.00:2	./.	./.	0/1:104,88:32:192:0.458:2	0/1:94,103:33:197:0.523:2	./.	./.	./.	./.
chr7	116165233	rs45498702	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,41:31:91:0.451:2	0/1:35,14:30:49:0.286:2	./.	./.	./.	./.
chr7	116165360	rs1997623	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:29:33:1.00:2	0/1:0,14:28:14:1.00:2	0/1:0,4:28:4:1.00:2	0/1:1,41:28:42:0.976:2	0/1:0,29:30:29:1.00:2	0/1:26,10:27:36:0.278:2	0/1:0,22:27:22:1.00:2	0/1:0,31:28:31:1.00:2	0/1:27,16:28:43:0.372:2	0/1:18,17:28:35:0.486:2	0/1:18,9:28:27:0.333:2
chr7	116165463	rs2742125	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:33:23:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,3:34:3:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,15:32:15:1.00:2	0/1:11,13:31:24:0.542:2	0/1:0,19:33:19:1.00:2	0/1:0,33:32:33:1.00:2	0/1:14,9:33:23:0.391:2	0/1:4,7:33:11:0.636:2	0/1:16,11:30:27:0.407:2
chr7	116335811	rs80153920	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,15:31:37:0.405:2	./.
chr7	116339282	rs11762213	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,71:32:145:0.490:2	./.	./.	0/1:75,45:32:120:0.375:2
chr7	116339672	rs35775721	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,31:30:56:0.554:2	./.	./.	./.	./.
chr7	116339791	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:134,4:32:138:0.029:2	./.	./.	./.	./.	./.	./.
chr7	116340189	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:32:72:0.056:2
chr7	116340262	rs33917957	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,31:33:60:0.517:2	./.	./.	./.	./.
chr7	116397572	rs13223756	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:31:9:0.667:2	./.	0/1:1,67:32:69:0.985:2	./.	0/1:40,18:33:58:0.310:2	./.	./.	./.	./.
chr7	116435768	rs41736	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,108:31:110:0.982:2	./.	0/1:56,52:31:108:0.481:2	./.	./.	0/1:1,102:33:103:0.990:2	./.	0/1:76,55:32:131:0.420:2
chr7	116436022	rs2023748	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:184,5:32:189:0.026:2	./.	0/1:13,12:32:25:0.480:2	0/1:1,193:31:194:0.995:2	0/1:194,4:33:198:0.020:2	0/1:90,100:31:190:0.526:2	./.	./.	0/1:1,187:32:188:0.995:2	./.	0/1:121,74:32:195:0.379:2
chr7	116436097	rs41737	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,9:31:26:0.346:2	0/1:1,134:31:135:0.993:2	./.	0/1:79,73:31:152:0.480:2	./.	./.	0/1:0,141:32:141:1.00:2	./.	0/1:79,52:31:132:0.397:2
chr7	116528240	rs4808	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	0/1:5,4:31:9:0.444:2	./.	./.	./.	./.	./.	./.
chr7	116544317	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:32:44:0.091:2	./.	./.	./.
chr7	116546394	rs148390930	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,6:32:9:0.667:2	./.	./.	./.	./.	./.
chr7	116596697	rs6960131	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:29:87:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,13:29:13:1.00:2	0/1:0,121:30:121:1.00:2	0/1:0,82:29:82:1.00:2	0/1:0,98:30:98:1.00:2	0/1:0,73:29:73:1.00:2	0/1:0,72:29:72:1.00:2	0/1:0,102:30:102:1.00:2	0/1:0,91:30:91:1.00:2	0/1:0,128:30:128:1.00:2
chr7	116598724	rs35042045	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:22,24:34:46:0.522:2	0/1:18,5:32:23:0.217:2	./.	./.	0/1:16,18:32:34:0.529:2	./.	./.	0/1:34,15:33:49:0.306:2	./.	0/1:29,19:32:48:0.396:2	./.
chr7	116598735	rs6466595	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,20:33:37:0.541:2	0/1:5,17:32:22:0.773:2	0/1:0,2:30:2:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,23:33:23:1.00:2	0/1:14,24:33:38:0.632:2	0/1:0,36:33:36:1.00:2	0/1:18,22:31:40:0.550:2	0/1:0,41:33:41:1.00:2
chr7	116607347	rs150371661	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,70:33:140:0.500:2	./.
chr7	116608501	rs13243111	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	0/1:1,28:32:29:0.966:2	./.	0/1:12,28:33:40:0.700:2	./.	./.	./.	./.
chr7	116776229	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:32:87:0.047:2	./.
chr7	116862976	rs35196356	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,13:31:36:0.361:2	./.	./.	./.
chr7	117024820	rs1029396	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,10:29:28:0.357:2	./.	./.	./.	0/1:97,87:29:184:0.473:2	./.	0/1:98,94:30:192:0.490:2	./.	./.
chr7	117188736	rs4727853	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:154,40:32:194:0.206:2	0/1:118,39:32:157:0.248:2	./.	0/1:151,43:31:194:0.222:2	0/1:169,20:31:189:0.106:2	0/1:164,33:31:198:0.168:2	0/1:160,27:30:187:0.144:2	0/1:170,26:31:196:0.133:2	0/1:160,31:31:191:0.162:2	0/1:166,27:32:193:0.140:2	0/1:153,32:32:185:0.173:2
chr7	117188739	rs62469440	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:173,21:32:194:0.108:2	0/1:158,12:32:170:0.071:2	0/1:36,3:32:39:0.077:2	0/1:185,11:32:196:0.056:2	0/1:172,22:32:194:0.113:2	0/1:174,23:32:197:0.117:2	0/1:181,13:32:194:0.067:2	0/1:169,26:32:196:0.133:2	0/1:188,4:32:192:0.021:2	0/1:175,20:31:195:0.103:2	0/1:178,8:30:186:0.043:2
chr7	117188750	rs201880593	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:178,15:30:193:0.078:2	0/1:161,24:32:185:0.130:2	./.	0/1:169,28:31:197:0.142:2	0/1:190,5:31:195:0.026:2	0/1:185,14:32:199:0.070:2	0/1:180,17:30:197:0.086:2	0/1:188,8:32:196:0.041:2	0/1:174,19:32:193:0.098:2	0/1:183,11:32:194:0.057:2	0/1:171,17:32:188:0.090:2
chr7	117188763	rs2896225	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:176,17:31:193:0.088:2	0/1:183,11:31:194:0.057:2	./.	0/1:188,8:32:196:0.041:2	0/1:173,21:30:194:0.108:2	0/1:174,23:30:197:0.117:2	0/1:183,13:31:196:0.066:2	0/1:175,21:31:196:0.107:2	0/1:190,4:33:194:0.021:2	0/1:178,16:31:194:0.082:2	0/1:179,8:32:188:0.043:2
chr7	117188797	rs201434579	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:167,9:33:177:0.051:2	0/1:166,23:33:189:0.122:2	0/1:56,5:33:61:0.082:2	0/1:170,16:32:186:0.086:2	0/1:187,6:32:194:0.031:2	0/1:174,23:33:197:0.117:2	0/1:177,15:32:192:0.078:2	0/1:174,17:33:191:0.089:2	0/1:178,10:33:189:0.053:2	0/1:169,12:33:181:0.066:2	0/1:172,17:32:190:0.090:2
chr7	117188850	rs79074685	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:177,10:33:190:0.053:2	0/1:162,8:32:170:0.047:2	./.	0/1:185,10:30:195:0.051:2	./.	0/1:173,20:31:193:0.104:2	./.	0/1:176,18:31:194:0.093:2	0/1:182,8:32:190:0.042:2	0/1:173,15:33:188:0.080:2	0/1:179,12:32:191:0.063:2
chr7	117188877	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,8:32:180:0.044:2	./.	./.	./.	0/1:175,4:33:179:0.022:2	./.
chr7	117199533	rs213950	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:15,11:32:26:0.423:2	0/1:7,14:32:21:0.667:2	./.	./.	0/1:5,7:32:12:0.583:2	./.	0/1:0,6:32:6:1.00:2	./.	0/1:10,6:32:16:0.375:2	0/1:0,24:32:24:1.00:2	0/1:15,15:31:30:0.500:2
chr7	117199709	rs1800095	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,13:33:25:0.520:2	0/1:2,2:34:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	117235055	rs1042077	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:52,60:30:112:0.536:2	0/1:43,35:29:78:0.449:2	0/1:9,3:31:12:0.250:2	./.	0/1:42,46:30:88:0.523:2	./.	0/1:0,110:30:110:1.00:2	./.	0/1:59,38:30:97:0.392:2	0/1:42,45:30:87:0.517:2	0/1:92,79:30:171:0.462:2
chr7	117242854	rs201716473	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,17:33:31:0.567:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	117242939	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:33:151:0.026:2
chr7	117250575	rs1800111	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,34:33:88:0.395:2	./.	./.	./.	./.	./.	./.	./.
chr7	117250625	rs149279509	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,66:33:155:0.426:2	./.	./.	./.
chr7	117267812	rs34911792	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,3:30:14:0.214:2	./.	./.	./.	./.
chr7	117282568	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:31:123:0.033:2	./.	./.
chr7	117292977	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2	./.	./.
chr7	117307108	rs1800136	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:60,55:32:115:0.478:2	0/1:34,37:32:71:0.521:2	./.	./.	0/1:52,45:31:97:0.464:2	./.	0/1:81,59:31:140:0.421:2	./.	./.	0/1:55,57:31:112:0.509:2	./.
chr7	117375374	rs62617115	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,7:31:17:0.412:2	0/1:7,16:33:23:0.696:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	117395664	rs34491454	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,14:32:21:0.667:2	./.
chr7	117825681	rs45604739	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:68,89:32:157:0.567:2	0/1:40,50:31:90:0.556:2	./.	./.	0/1:1,76:31:77:0.987:2	0/1:89,76:32:165:0.461:2	0/1:62,46:32:108:0.426:2	0/1:2,181:32:183:0.989:2	./.	0/1:2,149:32:151:0.987:2	0/1:99,95:32:194:0.490:2
chr7	117864893	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,4:32:102:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr7	117874569	rs188247571	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,36:33:76:0.474:2	./.	./.	./.	./.
chr7	117874918	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:32:29:0.138:2	./.	./.	./.	./.	./.
chr7	119915592	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,9:17:42:0.214:2	./.	./.	./.	./.	./.	./.	./.
chr7	120428799	rs41623	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,34:33:78:0.436:2	0/1:23,19:33:43:0.452:2	0/1:0,14:33:14:1.00:2	0/1:0,89:33:89:1.00:2	0/1:32,33:32:65:0.508:2	0/1:1,71:32:72:0.986:2	0/1:3,52:32:55:0.945:2	0/1:39,42:32:81:0.519:2	0/1:0,79:33:79:1.00:2	0/1:1,67:33:68:0.985:2	0/1:0,100:33:100:1.00:2
chr7	120591001	rs200416686	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,6:31:12:0.500:2	./.	./.	./.	./.	./.
chr7	120610901	rs2525725	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,18:30:35:0.514:2	0/1:9,9:31:18:0.500:2	./.	0/1:11,21:31:32:0.656:2	0/1:23,8:32:31:0.258:2	./.	./.	./.	./.	./.	./.
chr7	120629916	rs117047013	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,29:33:56:0.518:2	./.	./.
chr7	120704289	rs2721375	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:31:53:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,44:30:44:1.00:2	0/1:0,44:29:44:1.00:2	0/1:0,84:30:84:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,52:29:52:1.00:2	0/1:0,60:30:61:1.00:2
chr7	120704306	rs79296869	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,22:29:71:0.310:2	./.
chr7	120740103	rs798937	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,46:32:91:0.505:2	0/1:35,26:32:61:0.426:2	0/1:0,13:32:13:1.00:2	0/1:0,137:32:137:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,126:32:126:1.00:2	0/1:0,139:32:139:1.00:2	0/1:0,125:32:125:1.00:2	0/1:0,114:33:114:1.00:2	0/1:2,121:33:123:0.984:2	0/1:76,68:33:144:0.472:2
chr7	120764477	rs1524498	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,14:30:28:0.500:2	0/1:8,11:28:19:0.579:2	./.	0/1:25,24:28:49:0.490:2	0/1:35,7:27:42:0.167:2	0/1:1,38:29:39:0.974:2	0/1:15,12:29:27:0.444:2	0/1:21,25:29:46:0.543:2	0/1:0,47:29:47:1.00:2	0/1:24,14:30:38:0.368:2	./.
chr7	120765954	rs798949	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,55:29:127:0.433:2	0/1:26,38:28:64:0.594:2	0/1:0,13:28:13:1.00:2	0/1:63,74:28:137:0.540:2	0/1:39,48:28:87:0.552:2	0/1:0,119:29:119:1.00:2	0/1:81,33:28:114:0.289:2	0/1:102,60:28:162:0.370:2	0/1:0,108:29:108:1.00:2	0/1:43,50:29:93:0.538:2	./.
chr7	120773954	rs61128227	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,12:32:25:0.480:2	0/1:7,8:31:15:0.533:2	0/1:0,4:33:4:1.00:2	0/1:11,21:33:32:0.656:2	0/1:12,11:31:23:0.478:2	0/1:0,34:31:34:1.00:2	0/1:11,10:32:22:0.476:2	0/1:8,12:33:20:0.600:2	0/1:0,34:32:34:1.00:2	0/1:9,18:32:27:0.667:2	./.
chr7	120776097	rs41281692	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,12:33:26:0.462:2	0/1:7,11:31:18:0.611:2	0/1:0,5:32:5:1.00:2	0/1:22,6:32:28:0.214:2	0/1:24,9:30:34:0.273:2	0/1:1,31:31:32:0.969:2	0/1:17,15:28:32:0.469:2	0/1:26,21:31:47:0.447:2	0/1:0,35:33:35:1.00:2	0/1:19,13:30:32:0.406:2	./.
chr7	120876835	rs35793694	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,36:33:77:0.468:2	0/1:36,19:32:55:0.345:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,46:33:112:0.411:2
chr7	120901695	rs10953934	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,33:31:76:0.440:2	0/1:34,38:32:72:0.528:2	./.	0/1:57,49:31:106:0.462:2	0/1:40,31:31:71:0.437:2	./.	./.	0/1:59,52:32:112:0.468:2	./.	0/1:47,38:31:85:0.447:2	0/1:1,126:32:127:0.992:2
chr7	120901720	rs62621839	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:32:9:1.00:2	./.	./.	./.	./.	./.	0/1:63,48:32:111:0.432:2	./.	./.
chr7	120969412	rs35391640	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,30:32:59:0.508:2	./.	./.	./.
chr7	120969731	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,10:30:23:0.435:2	0/1:7,8:32:15:0.533:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	120969769	rs2908004	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,12:32:12:1.00:2	0/1:0,6:32:6:1.00:2	./.	0/1:13,14:30:27:0.519:2	./.	./.	./.	0/1:6,12:29:18:0.667:2	./.	0/1:0,13:30:13:1.00:2	0/1:0,13:29:13:1.00:2
chr7	120979089	rs2707466	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,17:31:18:0.944:2	0/1:0,8:32:8:1.00:2	./.	0/1:23,17:30:40:0.425:2	./.	./.	./.	0/1:22,9:30:31:0.290:2	./.	0/1:0,16:31:16:1.00:2	0/1:0,31:31:31:1.00:2
chr7	121513561	rs740965	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,34:32:69:0.493:2	0/1:39,47:31:86:0.547:2	0/1:22,25:32:47:0.532:2	./.	./.
chr7	121513570	rs11980387	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,27:32:58:0.466:2	./.	./.
chr7	121616250	rs4629793	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:31:3:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,28:32:28:1.00:2	0/1:29,14:31:43:0.326:2	0/1:17,13:32:30:0.433:2	0/1:39,21:32:60:0.350:2	0/1:39,24:33:63:0.381:2	0/1:38,27:33:65:0.415:2	./.
chr7	121653177	rs61732006	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,82:29:152:0.539:2	0/1:57,53:29:110:0.482:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	121653250	rs61732005	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,66:31:155:0.426:2	0/1:68,46:31:114:0.404:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	121653398	rs1147504	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,41:31:96:0.427:2	0/1:26,25:31:51:0.490:2	./.	./.	./.	0/1:55,47:31:102:0.461:2	./.	./.	0/1:59,50:32:109:0.459:2	0/1:50,59:32:109:0.541:2	0/1:49,53:32:102:0.520:2
chr7	121653901	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:34:144:0.028:2	./.	./.
chr7	121668697	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:35:156:0.026:2
chr7	121753711	rs61750983	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,64:32:147:0.435:2	./.	./.	./.	./.
chr7	122000900	rs45489900	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,47:31:97:0.485:2
chr7	122078414	rs2074589	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,21:29:21:1.00:2	0/1:75,58:30:133:0.436:2	./.	0/1:63,74:29:137:0.540:2	./.	0/1:71,52:29:123:0.423:2	0/1:114,79:30:193:0.409:2	./.	0/1:97,76:29:173:0.439:2
chr7	122303321	rs2251761	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:32:55:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,57:32:57:1.00:2	0/1:27,11:31:38:0.289:2	0/1:0,62:32:62:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,62:32:62:1.00:2	./.
chr7	122342889	rs73220287	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:9,7:32:16:0.438:2	./.	./.	./.	./.	./.	./.	./.
chr7	122635024	rs860170	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:77,65:31:142:0.458:2	0/1:34,21:31:56:0.382:2	0/1:7,6:31:13:0.462:2	0/1:65,53:31:118:0.449:2	0/1:1,145:31:146:0.993:2	0/1:2,131:31:133:0.985:2	0/1:2,117:31:119:0.983:2	0/1:2,100:31:102:0.980:2	0/1:0,100:32:100:1.00:2	0/1:54,48:31:103:0.471:2	0/1:65,69:31:135:0.515:2
chr7	122635552	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:33:129:0.031:2	./.	./.	./.	./.
chr7	122809234	rs2140516	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,120:33:122:0.984:2	0/1:0,65:32:65:1.00:2	0/1:10,12:33:22:0.545:2	0/1:99,73:32:172:0.424:2	./.	0/1:96,80:33:176:0.455:2	0/1:129,67:33:196:0.342:2	./.	./.	0/1:2,132:33:134:0.985:2	./.
chr7	123097468	rs10234745	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,50:30:51:0.980:2	0/1:0,13:29:13:1.00:2	0/1:4,5:30:9:0.556:2	0/1:40,25:29:65:0.385:2	./.	0/1:24,16:30:40:0.400:2	./.	./.	./.	0/1:14,22:29:36:0.611:2	./.
chr7	123119990	rs10500091	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,47:32:50:0.940:2	0/1:3,51:32:54:0.944:2	0/1:8,5:32:13:0.385:2	0/1:45,32:32:77:0.416:2	./.	0/1:23,46:32:69:0.667:2	./.	./.	./.	0/1:45,15:34:60:0.250:2	./.
chr7	123152019	rs10255061	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,54:32:54:1.00:2	0/1:0,35:32:35:1.00:2	./.	0/1:27,26:31:53:0.491:2	./.	0/1:40,32:30:72:0.444:2	./.	./.	./.	0/1:20,19:32:39:0.487:2	./.
chr7	123152035	rs10270705	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,65:32:65:1.00:2	0/1:1,36:32:37:0.973:2	./.	0/1:28,33:31:61:0.541:2	0/1:0,44:31:44:1.00:2	0/1:41,35:32:76:0.461:2	./.	./.	./.	0/1:29,24:32:53:0.453:2	0/1:0,98:32:99:1.00:2
chr7	123182222	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,6:26:117:0.051:2	./.	./.	./.
chr7	123182228	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,6:30:114:0.053:2	./.	./.	./.
chr7	123182236	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,6:31:114:0.053:2	./.	./.	./.
chr7	123197841	rs201408416	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,5:26:87:0.057:2	0/1:98,7:25:105:0.067:2	./.	./.	0/1:63,4:29:67:0.060:2	0/1:59,8:28:67:0.119:2
chr7	123256427	rs6962756	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:33:64:1.00:2	0/1:0,52:33:52:1.00:2	0/1:6,10:33:16:0.625:2	0/1:0,115:32:115:1.00:2	0/1:1,58:32:59:0.983:2	0/1:2,88:32:90:0.978:2	0/1:49,43:32:92:0.467:2	0/1:0,84:32:84:1.00:2	./.	0/1:0,82:33:82:1.00:2	0/1:0,101:33:101:1.00:2
chr7	123264804	rs11769381	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,172:29:173:0.994:2	./.	0/1:108,85:29:193:0.440:2	0/1:117,75:29:192:0.391:2	0/1:91,104:29:195:0.533:2	./.	0/1:94,77:30:171:0.450:2	0/1:87,95:30:182:0.522:2
chr7	123269118	rs4731112	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,160:32:164:0.976:2	0/1:1,129:32:130:0.992:2	0/1:15,18:33:33:0.545:2	0/1:1,188:33:189:0.995:2	0/1:0,183:32:183:1.00:2	0/1:0,189:33:189:1.00:2	0/1:90,92:33:182:0.505:2	0/1:0,181:32:181:1.00:2	0/1:104,87:33:191:0.455:2	0/1:2,178:33:180:0.989:2	0/1:1,184:32:185:0.995:2
chr7	123296119	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,8:32:50:0.160:2	./.	./.	./.
chr7	123301940	rs7809453	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,55:33:55:1.00:2	./.	0/1:32,20:32:52:0.385:2	0/1:22,11:31:33:0.333:2	0/1:41,16:32:57:0.281:2	./.	0/1:28,19:33:47:0.404:2	0/1:36,41:32:77:0.532:2
chr7	123334920	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,3:30:25:0.120:2	./.	./.	./.	./.
chr7	123388684	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,4:30:55:0.073:2	./.	./.	./.	./.	./.	./.
chr7	123388732	rs1054706	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,60:32:60:1.00:2	./.	0/1:19,22:31:41:0.537:2	0/1:28,26:30:54:0.481:2	0/1:16,23:30:39:0.590:2	./.	0/1:17,11:31:28:0.393:2	0/1:10,14:29:24:0.583:2
chr7	123508328	rs12672205	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,6:29:6:1.00:2	./.	./.	./.	./.	./.	0/1:4,4:28:8:0.500:2
chr7	123514896	rs6949082	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:28,12:32:40:0.300:2	0/1:14,8:31:22:0.364:2	./.	./.	./.	./.	./.	0/1:0,36:32:36:1.00:2	./.	0/1:26,13:32:39:0.333:2	./.
chr7	123593633	rs34404662	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,18:28:66:0.273:2	./.	./.	./.
chr7	123593764	rs34633019	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,39:28:108:0.361:2	./.	./.	./.
chr7	123594206	rs2285996	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:15,6:33:21:0.286:2	0/1:8,14:33:22:0.636:2	./.	./.	0/1:15,15:33:30:0.500:2	./.	./.	./.	./.	0/1:19,11:33:30:0.367:2	0/1:40,20:32:60:0.333:2
chr7	123595086	rs34978112	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,38:31:85:0.447:2	./.	./.	./.
chr7	123595094	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,36:31:82:0.439:2	./.	./.	./.
chr7	123599845	rs75168651	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,47:32:104:0.452:2	./.	./.	./.	./.
chr7	124116470	rs2402730	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,25:27:63:0.397:2	./.	./.	./.	./.
chr7	124387092	rs3735270	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,19:33:47:0.404:2	0/1:25,10:33:35:0.286:2	./.	0/1:25,27:32:52:0.519:2	0/1:0,20:32:20:1.00:2	0/1:0,40:32:40:1.00:2	0/1:16,18:33:34:0.529:2	0/1:2,43:33:45:0.956:2	./.	0/1:18,6:33:24:0.250:2	0/1:0,52:33:52:1.00:2
chr7	124387374	rs724356	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,32:31:32:1.00:2	./.	0/1:30,44:31:74:0.595:2	0/1:0,57:32:57:1.00:2	0/1:2,55:32:57:0.965:2	0/1:0,56:31:56:1.00:2	0/1:0,54:31:54:1.00:2	0/1:31,22:34:53:0.415:2	0/1:20,18:32:38:0.474:2	0/1:1,57:32:58:0.983:2
chr7	124404371	rs61744942	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:31:6:1.00:2	./.	./.	./.	./.	./.	./.	0/1:16,7:31:23:0.304:2	0/1:16,11:29:27:0.407:2
chr7	124404983	rs62638681	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:32:10:0.300:2
chr7	124469314	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:33:90:0.044:2	./.	./.	./.	./.	./.
chr7	124469365	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:32:62:0.065:2	./.	./.	./.	./.	./.
chr7	124486980	rs7794637	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,88:30:88:1.00:2	0/1:0,45:29:45:1.00:2	0/1:0,3:29:3:1.00:2	./.	0/1:1,58:29:59:0.983:2	0/1:69,47:29:116:0.405:2	0/1:46,42:30:88:0.477:2	0/1:44,48:29:92:0.522:2	0/1:48,40:30:88:0.455:2	0/1:1,95:30:96:0.990:2	0/1:0,93:29:93:1.00:2
chr7	124499165	rs200464979	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,9:13:46:0.196:2	./.	./.	./.	0/1:62,13:12:75:0.173:2	./.	./.	./.
chr7	126173755	rs61753364	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,55:29:102:0.539:2	0/1:27,25:29:52:0.481:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	126410110	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:32:61:0.066:2	./.	./.
chr7	126542667	rs78124913	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,8:27:9:0.889:2	0/1:31,33:30:64:0.516:2	0/1:18,20:30:38:0.526:2	./.	./.	./.	./.	./.	./.
chr7	127017260	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	127222157	rs3735644	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,176:32:184:0.957:2	0/1:1,134:32:135:0.993:2	./.	./.	0/1:109,89:31:198:0.449:2	0/1:102,95:31:197:0.482:2	./.	0/1:97,100:31:197:0.508:2	0/1:0,184:32:184:1.00:2	./.	./.
chr7	127222521	rs33973710	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,7:31:10:0.700:2	./.	./.	./.	0/1:4,92:31:96:0.958:2	./.	./.	./.	./.
chr7	127223082	rs34836950	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,46:31:87:0.529:2	./.	./.	0/1:79,40:32:119:0.336:2	./.	./.
chr7	127224286	rs3735642	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,96:32:98:0.980:2	0/1:3,69:32:72:0.958:2	./.	./.	0/1:96,45:31:141:0.319:2	0/1:81,86:32:167:0.515:2	./.	0/1:102,88:31:190:0.463:2	0/1:1,155:33:156:0.994:2	./.	./.
chr7	127224547	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:30:122:0.033:2	./.
chr7	127235590	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,74:30:182:0.407:2	./.	./.	./.
chr7	127251188	rs712701	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:32:10:1.00:2	0/1:0,163:32:163:1.00:2	0/1:136,57:32:193:0.295:2	0/1:100,75:32:176:0.429:2	0/1:2,152:32:154:0.987:2	0/1:107,79:32:186:0.425:2	./.	0/1:0,123:32:123:1.00:2	0/1:2,144:33:146:0.986:2
chr7	127253898	rs77039439	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,20:30:49:0.408:2
chr7	127344956	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:32:54:0.074:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	127637816	rs17151639	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,12:30:24:0.500:2	./.	./.	./.	0/1:103,91:28:194:0.469:2	./.	./.	./.	0/1:84,92:29:176:0.523:2
chr7	127669584	rs73238074	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,34:29:67:0.507:2	./.	./.	./.	./.	./.	0/1:23,16:27:39:0.410:2	./.
chr7	127669857	rs3823994	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,140:31:141:0.993:2	./.	./.	./.	./.	./.	0/1:0,127:32:127:1.00:2	./.
chr7	127670327	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,5:30:33:0.152:2
chr7	127721507	rs322825	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,9:30:20:0.450:2	0/1:1,132:30:133:0.992:2	0/1:106,75:30:181:0.414:2	./.	0/1:3,129:29:132:0.977:2	0/1:97,90:29:187:0.481:2	./.	0/1:0,115:29:115:1.00:2	0/1:65,50:28:115:0.435:2
chr7	127953243	rs7804796	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,84:33:187:0.449:2	./.	./.	./.	./.	./.	./.	./.
chr7	127965924	rs117445229	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,43:32:81:0.531:2	./.	./.	./.	./.	./.
chr7	127991133	rs891215	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:10,6:32:16:0.375:2	0/1:2,5:30:7:0.714:2	./.	0/1:0,31:31:31:1.00:2	./.	0/1:0,26:31:26:1.00:2	0/1:4,8:31:12:0.667:2	0/1:19,15:32:34:0.441:2	0/1:6,9:33:15:0.600:2	0/1:1,22:31:23:0.957:2	./.
chr7	127999645	rs56272205	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,11:32:19:0.579:2	./.	./.	./.	./.	./.	0/1:12,20:31:32:0.625:2
chr7	128034629	rs2228075	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,26:31:29:0.897:2	./.	0/1:12,19:31:31:0.613:2	0/1:29,23:32:52:0.442:2	./.	./.	0/1:4,10:32:14:0.714:2
chr7	128035213	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:30:60:0.067:2
chr7	128040398	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:32:70:0.057:2	./.	./.	./.	./.	./.
chr7	128097904	rs7806193	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:12,12:28:24:0.500:2	0/1:12,3:31:15:0.200:2	./.	./.	./.	./.	0/1:7,5:27:12:0.417:2	0/1:8,7:28:15:0.467:2	./.	0/1:3,4:28:7:0.571:2	0/1:19,3:30:22:0.136:2
chr7	128098071	rs1048531	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,69:30:185:0.373:2	./.	./.	./.	./.	./.
chr7	128098201	rs1560215	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:99,71:31:170:0.418:2	0/1:91,65:31:156:0.417:2	./.	./.	./.	./.	0/1:116,55:31:171:0.322:2	0/1:81,79:31:160:0.494:2	./.	0/1:102,79:31:181:0.436:2	0/1:114,81:32:195:0.415:2
chr7	128117180	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:30:73:0.055:2	./.	./.	./.	./.
chr7	128117227	rs2288557	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,7:28:16:0.438:2	./.	0/1:3,49:31:52:0.942:2	./.	0/1:61,32:32:93:0.344:2	./.	./.	./.	./.
chr7	128119351	rs17152098	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:162,5:33:167:0.030:2	0/1:107,4:33:111:0.036:2	./.	./.	./.	./.	0/1:151,4:31:155:0.026:2	./.	./.	./.	./.
chr7	128119379	rs2896399	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:148,6:31:155:0.039:2	./.	./.	0/1:145,4:31:149:0.027:2	0/1:118,4:32:122:0.033:2	0/1:144,10:31:154:0.065:2	0/1:118,10:31:128:0.078:2	0/1:149,4:32:153:0.026:2	0/1:160,15:32:175:0.086:2	0/1:118,10:30:128:0.078:2	./.
chr7	128119380	.	G	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:145,6:31:151:0.040:2	./.	./.	0/1:146,4:32:150:0.027:2	0/1:117,4:32:121:0.033:2	0/1:142,10:31:152:0.066:2	0/1:117,10:31:128:0.079:2	0/1:149,4:31:153:0.026:2	0/1:160,15:32:175:0.086:2	0/1:112,10:31:122:0.082:2	./.
chr7	128119514	rs1065267	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:117,47:32:164:0.287:2	./.	0/1:139,41:31:180:0.228:2	./.	./.	0/1:122,61:32:183:0.333:2	0/1:113,36:32:149:0.242:2	./.
chr7	128133984	rs2562741	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,185:31:185:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,18:31:18:1.00:2	0/1:1,176:31:177:0.994:2	0/1:0,131:31:131:1.00:2	0/1:0,167:31:167:1.00:2	0/1:0,119:31:119:1.00:2	0/1:0,180:31:180:1.00:2	0/1:0,174:32:174:1.00:2	0/1:2,165:32:167:0.988:2	0/1:0,165:32:165:1.00:2
chr7	128138185	rs73232665	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,77:31:78:0.987:2	./.	0/1:84,39:31:123:0.317:2	./.	./.	./.	./.
chr7	128140982	rs10257897	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,57:30:115:0.496:2	0/1:39,55:29:94:0.585:2	0/1:13,6:29:19:0.316:2	0/1:54,87:30:141:0.617:2	./.	0/1:57,47:29:104:0.452:2	./.	./.	0/1:0,164:31:164:1.00:2	0/1:50,75:30:125:0.600:2	./.
chr7	128141865	rs1053124	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,48:32:109:0.440:2	0/1:33,24:32:57:0.421:2	0/1:0,12:32:12:1.00:2	0/1:64,67:32:131:0.511:2	0/1:1,79:32:80:0.988:2	0/1:2,115:32:117:0.983:2	0/1:84,60:32:144:0.417:2	0/1:71,83:32:154:0.539:2	0/1:0,121:33:121:1.00:2	0/1:70,49:32:119:0.412:2	0/1:76,60:32:136:0.441:2
chr7	128312450	rs11769769	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,8:32:45:0.178:2	./.	0/1:0,24:30:24:1.00:2	./.	0/1:30,31:31:61:0.508:2	0/1:22,12:33:34:0.353:2	./.	./.
chr7	128312463	rs74343948	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,36:33:36:1.00:2	0/1:0,16:33:16:1.00:2	./.	./.	./.	./.	0/1:21,13:33:34:0.382:2	./.	0/1:17,21:33:38:0.553:2	0/1:16,14:33:30:0.467:2	0/1:34,11:32:45:0.244:2
chr7	128315791	rs61738927	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,36:30:36:1.00:2	0/1:0,18:31:18:1.00:2	./.	./.	0/1:1,36:27:37:0.973:2	./.	0/1:0,60:28:60:1.00:2	0/1:31,22:28:53:0.415:2	0/1:34,21:30:55:0.382:2	0/1:26,12:30:38:0.316:2	0/1:0,35:29:35:1.00:2
chr7	128315882	rs17169357	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,27:30:27:1.00:2	0/1:0,11:31:11:1.00:2	./.	./.	0/1:0,18:31:18:1.00:2	./.	0/1:0,40:31:40:1.00:2	0/1:17,12:30:29:0.414:2	0/1:17,15:31:32:0.469:2	0/1:13,6:30:19:0.316:2	0/1:0,33:32:33:1.00:2
chr7	128317658	rs6467210	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,51:32:51:1.00:2	0/1:0,35:33:36:1.00:2	./.	./.	0/1:0,66:32:66:1.00:2	./.	0/1:0,60:33:60:1.00:2	0/1:42,48:33:90:0.533:2	0/1:40,24:33:64:0.375:2	0/1:22,28:33:50:0.560:2	0/1:0,90:33:90:1.00:2
chr7	128323034	rs1109552	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,31:29:31:1.00:2	0/1:0,17:28:17:1.00:2	./.	./.	0/1:0,20:28:20:1.00:2	./.	0/1:0,23:26:23:1.00:2	0/1:13,7:27:20:0.350:2	0/1:24,11:28:35:0.314:2	0/1:11,17:29:28:0.607:2	0/1:0,25:28:25:1.00:2
chr7	128356989	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,4:33:77:0.052:2	./.	./.	./.	./.	./.	./.	./.
chr7	128358891	rs745229	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,19:30:52:0.365:2	./.	./.	./.	./.	./.
chr7	128359133	rs6949056	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:32:10:0.300:2	./.	0/1:1,54:32:55:0.982:2	0/1:23,20:32:43:0.465:2	0/1:40,26:32:66:0.394:2	0/1:1,59:32:60:0.983:2	0/1:29,24:32:53:0.453:2	./.	0/1:28,27:32:55:0.491:2
chr7	128363287	rs6971091	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,42:31:69:0.609:2	./.	./.	./.	./.	./.
chr7	128371206	rs339066	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:32:6:0.500:2	0/1:15,9:33:24:0.375:2	0/1:0,18:31:18:1.00:2	0/1:0,48:31:48:1.00:2	0/1:8,14:31:22:0.636:2	0/1:0,25:31:25:1.00:2	0/1:18,11:33:29:0.379:2	./.	0/1:29,32:33:61:0.525:2
chr7	128388648	rs2290228	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,39:32:77:0.506:2	0/1:48,44:32:92:0.478:2
chr7	128394590	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,57:30:121:0.475:2	./.	./.	./.
chr7	128394606	rs2307040	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,40:30:102:0.392:2	0/1:41,33:31:74:0.446:2	0/1:5,11:30:16:0.688:2	0/1:75,59:32:134:0.440:2	0/1:59,35:30:94:0.372:2	0/1:0,106:31:106:1.00:2	0/1:56,42:31:98:0.429:2	0/1:60,55:31:115:0.478:2	0/1:63,56:32:119:0.471:2	0/1:69,50:32:119:0.420:2	0/1:86,72:31:158:0.456:2
chr7	128394738	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,4:31:77:0.052:2	./.	./.	./.	./.	./.	./.
chr7	128415195	rs1799922	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,24:32:50:0.480:2	0/1:17,9:33:26:0.346:2	./.	0/1:23,25:33:48:0.521:2	0/1:29,26:33:55:0.473:2	0/1:0,41:33:41:1.00:2	0/1:43,32:33:75:0.427:2	0/1:29,31:33:60:0.517:2	0/1:34,20:34:54:0.370:2	0/1:13,15:32:28:0.536:2	0/1:25,12:32:37:0.324:2
chr7	128454762	rs61730244	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,42:32:92:0.457:2	./.	./.	./.	./.	./.	./.
chr7	128455767	rs4728137	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,128:32:128:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,135:33:135:1.00:2	0/1:0,108:32:108:1.00:2	0/1:1,145:32:146:0.993:2	0/1:0,116:32:116:1.00:2	0/1:0,192:32:192:1.00:2	0/1:0,141:32:141:1.00:2	0/1:0,127:32:127:1.00:2	0/1:0,114:32:115:1.00:2
chr7	128455778	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:33:159:0.025:2	./.	./.	./.	./.	./.
chr7	128455916	rs2270590	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,31:33:61:0.508:2	0/1:21,26:32:47:0.553:2	0/1:4,9:32:13:0.692:2	0/1:38,34:32:72:0.472:2	0/1:30,31:31:61:0.508:2	./.	0/1:37,27:31:64:0.422:2	./.	./.	./.	./.
chr7	128470838	rs3734972	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,15:31:36:0.417:2	./.	./.	./.	0/1:63,81:30:144:0.563:2	./.	./.	./.	./.
chr7	128477472	rs2291560	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,11:32:34:0.324:2	./.	./.	./.	./.
chr7	128477547	rs2291561	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,16:31:56:0.286:2	./.	./.	./.	./.
chr7	128478103	rs2291562	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,38:32:77:0.494:2	0/1:23,32:31:55:0.582:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	128480184	rs189525930	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,32:33:55:0.582:2	./.
chr7	128480666	rs76046880	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,74:31:172:0.430:2	0/1:106,74:31:181:0.411:2	./.	./.	./.	./.	./.	./.
chr7	128481404	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:34:75:0.053:2	./.	./.	./.	./.	./.
chr7	128483884	rs200474685	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,10:17:73:0.137:2	./.	./.	./.
chr7	128484816	rs3734973	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:26,18:33:44:0.409:2	0/1:15,16:32:31:0.516:2	0/1:6,7:33:13:0.538:2	./.	./.	./.	0/1:63,40:33:103:0.388:2	./.	./.	./.	./.
chr7	128484832	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:31:141:0.028:2	./.	./.	./.
chr7	128485240	rs146953558	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,90:30:178:0.506:2	./.	./.	./.	./.	./.	./.
chr7	128486091	rs34180031	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,46:32:111:0.418:2	0/1:84,49:32:133:0.368:2	./.	./.	./.	./.	./.	./.
chr7	128486363	rs34373805	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,49:32:92:0.533:2	0/1:29,14:32:43:0.326:2	0/1:12,7:30:19:0.368:2	0/1:73,53:31:126:0.421:2	0/1:100,82:30:182:0.451:2	./.	0/1:70,99:31:169:0.586:2	./.	./.	./.	./.
chr7	128486446	rs75770585	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,32:31:58:0.552:2	0/1:19,16:31:35:0.457:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	128487866	rs2249128	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,23:33:23:1.00:2	0/1:0,15:32:15:1.00:2	./.	0/1:0,17:32:17:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,26:32:26:1.00:2
chr7	128487893	rs2291568	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,9:31:19:0.474:2	0/1:5,9:31:14:0.643:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	128488734	rs2291569	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,7:32:18:0.389:2	./.	./.	./.	./.
chr7	128491603	rs3816884	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,58:28:103:0.563:2	0/1:47,26:30:73:0.356:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	128495338	rs3816885	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,17:32:39:0.436:2	0/1:16,12:31:28:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	128498190	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,11:32:150:0.073:2	./.	./.	./.	0/1:182,7:32:189:0.037:2	0/1:168,7:32:175:0.040:2	./.	./.
chr7	128519849	rs117426901	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,15:32:31:0.484:2	0/1:24,19:32:43:0.442:2	./.	./.	./.	./.	./.	./.
chr7	128520068	rs76530107	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,11:31:31:0.355:2	0/1:10,4:31:14:0.286:2	./.	./.	./.	./.	./.	./.
chr7	128520118	rs147956620	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,10:29:22:0.455:2	0/1:15,21:30:36:0.583:2	./.	./.	./.	./.	./.
chr7	128525242	rs150308488	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,39:32:88:0.443:2	./.	./.
chr7	128526549	rs75892815	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,34:31:66:0.515:2	./.	./.	./.	./.	./.	./.	./.
chr7	128529032	rs373964316	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,13:30:24:0.542:2
chr7	128532980	rs7782976	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,6:30:13:0.462:2	./.	./.	0/1:8,3:27:11:0.273:2	./.	./.
chr7	128544133	rs56144153	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,18:30:45:0.400:2	./.	./.	0/1:111,74:30:185:0.400:2	./.	./.	0/1:82,108:31:190:0.568:2	./.	./.
chr7	128587374	rs113806178	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,17:32:32:0.531:2	./.	./.	0/1:17,15:32:33:0.469:2	./.	./.	./.
chr7	128607384	rs8043	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,118:33:120:0.983:2	0/1:0,87:33:87:1.00:2	./.	0/1:100,61:32:161:0.379:2	0/1:65,58:31:123:0.472:2	0/1:0,104:32:104:1.00:2	0/1:0,114:32:114:1.00:2	0/1:108,73:32:181:0.403:2	./.	0/1:91,65:33:156:0.417:2	0/1:106,76:32:182:0.418:2
chr7	128612552	rs11538884	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,46:31:86:0.535:2	./.	./.	./.	./.	./.	./.	0/1:53,28:31:81:0.346:2
chr7	128614990	rs2293493	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,29:31:54:0.537:2	./.	./.	./.	./.	./.	./.	0/1:37,12:32:49:0.245:2
chr7	128641226	rs2305324	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,105:32:107:0.981:2	0/1:0,74:32:74:1.00:2	./.	0/1:91,97:33:188:0.516:2	0/1:101,92:32:193:0.477:2	0/1:2,170:32:172:0.988:2	0/1:2,182:33:184:0.989:2	0/1:66,120:33:187:0.645:2	./.	0/1:80,83:33:163:0.509:2	0/1:67,83:33:151:0.553:2
chr7	128843382	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:29:35:0.114:2	./.	./.	./.
chr7	128845555	rs45445295	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,43:29:82:0.524:2	./.	./.	./.	./.	./.
chr7	128846328	rs2228617	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:31:65:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,81:32:81:1.00:2	0/1:1,98:32:100:0.990:2	0/1:0,106:32:107:1.00:2	0/1:0,106:32:107:1.00:2	0/1:2,121:32:123:0.984:2	0/1:0,82:33:82:1.00:2	0/1:0,86:32:86:1.00:2	0/1:2,87:31:89:0.978:2
chr7	128851980	rs77320475	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,7:31:13:0.538:2	./.	./.	0/1:5,4:27:9:0.444:2	./.	./.	./.
chr7	129110498	rs61746947	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,61:32:129:0.477:2	0/1:41,24:31:65:0.369:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	129122808	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,51:31:98:0.520:2	./.	./.	./.	./.
chr7	129297332	rs1882094	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,119:30:119:1.00:2	0/1:54,34:29:88:0.386:2	./.	0/1:137,5:31:142:0.035:2	0/1:49,26:30:75:0.347:2	./.	./.
chr7	129311285	rs146404476	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,38:33:84:0.452:2	./.	./.	./.	./.
chr7	129330353	rs3735006	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,25:31:79:0.316:2
chr7	129394986	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:30:121:0.033:2	./.	./.
chr7	129410227	rs76481776	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,23:31:32:0.719:2
chr7	129479138	rs12539800	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,70:32:139:0.504:2	./.	./.	./.	0/1:52,63:32:115:0.548:2
chr7	129663496	rs11556924	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,6:31:7:0.857:2	0/1:21,19:30:40:0.475:2	./.	./.	./.	./.	./.	0/1:22,24:32:46:0.522:2	0/1:1,51:32:52:0.981:2
chr7	129664304	rs117785128	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,25:33:58:0.431:2	0/1:25,16:31:41:0.390:2	./.
chr7	129664312	rs1464890	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,24:33:53:0.453:2	0/1:22,18:32:40:0.450:2	0/1:25,16:33:41:0.390:2	./.	./.	0/1:25,31:34:56:0.554:2	0/1:16,20:33:36:0.556:2	0/1:0,51:33:51:1.00:2
chr7	129710488	rs3734928	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,10:30:10:1.00:2	./.	./.	./.
chr7	129806363	rs6467284	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:30:6:0.667:2	0/1:0,6:32:6:1.00:2	./.	./.
chr7	129813738	rs3823482	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,26:32:48:0.553:2	0/1:15,11:33:26:0.423:2	./.	./.	./.	0/1:24,20:32:44:0.455:2	./.	0/1:20,29:33:50:0.592:2	0/1:23,22:34:46:0.489:2	./.	0/1:27,29:33:56:0.518:2
chr7	129818304	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,3:32:34:0.088:2	./.	./.	./.	./.	./.	./.
chr7	129841865	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:113,4:30:117:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr7	129845202	rs62491980	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,12:31:23:0.522:2	./.	./.	./.	./.	./.	./.	./.
chr7	129855837	rs4728190	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:56,59:31:115:0.513:2	0/1:41,24:31:65:0.369:2	./.	./.	0/1:62,59:31:121:0.488:2	./.	0/1:55,63:31:118:0.534:2	./.	./.	./.	./.
chr7	129910550	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,4:30:39:0.103:2	./.	./.	./.	./.	./.
chr7	129916515	rs17590	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,128:29:131:0.977:2	0/1:1,93:29:94:0.989:2	0/1:8,11:28:19:0.579:2	0/1:1,116:28:117:0.991:2	0/1:1,120:28:121:0.992:2	0/1:70,60:28:130:0.462:2	0/1:65,61:28:126:0.484:2	0/1:70,74:29:144:0.514:2	0/1:0,146:29:146:1.00:2	0/1:0,145:29:145:1.00:2	0/1:1,145:29:146:0.993:2
chr7	129938598	rs34587586	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,124:32:124:1.00:2	0/1:0,61:32:61:1.00:2	./.	0/1:83,37:31:120:0.308:2	0/1:38,42:30:80:0.525:2	./.	./.	./.	0/1:2,142:32:144:0.986:2	0/1:61,67:31:128:0.523:2	0/1:89,88:31:177:0.497:2
chr7	129950740	rs2171492	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,31:30:32:0.969:2	0/1:0,29:31:29:1.00:2	0/1:1,3:31:4:0.750:2	0/1:31,26:31:57:0.456:2	0/1:21,30:31:51:0.588:2	./.	./.	./.	0/1:0,43:31:43:1.00:2	0/1:23,22:32:45:0.489:2	0/1:37,28:31:65:0.431:2
chr7	129950817	rs73148705	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,24:32:49:0.490:2	./.	./.	./.
chr7	129962360	rs1569133	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:28:72:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,11:28:11:1.00:2	0/1:0,92:28:92:1.00:2	0/1:0,117:29:117:1.00:2	0/1:0,90:29:90:1.00:2	0/1:1,94:28:95:0.989:2	0/1:0,98:29:98:1.00:2	0/1:0,100:30:100:1.00:2	0/1:0,83:29:83:1.00:2	0/1:0,93:29:94:1.00:2
chr7	129962414	rs2306848	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,54:33:93:0.581:2
chr7	129986338	rs6973851	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:32:8:0.500:2	./.	0/1:10,10:33:20:0.500:2	0/1:0,26:32:26:1.00:2	0/1:0,27:32:27:1.00:2	0/1:2,35:31:37:0.946:2	./.	0/1:11,10:32:21:0.476:2	0/1:12,20:33:32:0.625:2
chr7	129989878	rs7808823	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,21:29:47:0.447:2	0/1:17,14:31:31:0.452:2	0/1:0,6:31:6:1.00:2	0/1:0,70:31:70:1.00:2	0/1:26,24:30:50:0.480:2	0/1:39,33:30:72:0.458:2	0/1:41,15:31:56:0.268:2	0/1:60,38:29:98:0.388:2	./.	0/1:35,39:30:74:0.527:2	0/1:52,35:29:87:0.402:2
chr7	130002317	rs1544705	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:29:53:1.00:2	0/1:0,31:29:31:1.00:2	0/1:0,9:27:9:1.00:2	0/1:0,87:30:87:1.00:2	0/1:0,39:28:39:1.00:2	0/1:22,17:29:39:0.436:2	0/1:22,23:31:45:0.511:2	0/1:46,21:29:67:0.313:2	0/1:1,74:30:75:0.987:2	0/1:35,29:28:64:0.453:2	0/1:0,77:28:77:1.00:2
chr7	130007381	rs11761888	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,61:30:162:0.377:2	0/1:75,81:29:156:0.519:2	0/1:91,61:29:152:0.401:2	./.	0/1:73,70:29:143:0.490:2	./.
chr7	130007388	rs17854248	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,60:31:159:0.377:2	./.	0/1:85,57:31:142:0.401:2	./.	0/1:68,67:32:135:0.496:2	./.
chr7	130008259	rs11765961	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,22:28:62:0.355:2	./.	./.	./.	./.
chr7	130008285	rs17164867	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,26:31:62:0.419:2	./.	0/1:48,32:30:80:0.400:2	./.	0/1:24,20:30:44:0.455:2	./.
chr7	130021488	rs1126899	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,14:29:27:0.519:2	0/1:11,9:31:20:0.450:2	./.	0/1:0,46:30:46:1.00:2	0/1:26,31:31:57:0.544:2	0/1:0,29:30:29:1.00:2	0/1:3,37:31:40:0.925:2	0/1:27,18:31:45:0.400:2	./.	0/1:0,36:30:36:1.00:2	0/1:24,9:30:33:0.273:2
chr7	130022041	rs968404	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,49:32:87:0.563:2	./.	./.	./.
chr7	130023539	rs12706927	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,55:30:143:0.385:2	./.	./.	./.
chr7	130080812	rs2287371	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:5,10:33:15:0.667:2	0/1:3,3:32:6:0.500:2	./.	./.	./.	./.	0/1:10,11:32:21:0.524:2	0/1:0,30:33:30:1.00:2	0/1:15,7:34:22:0.318:2	0/1:0,25:32:25:1.00:2	0/1:9,8:34:17:0.471:2
chr7	130137778	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2
chr7	130138040	rs61735155	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,47:31:89:0.528:2	./.	./.	./.	./.
chr7	130356587	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.
chr7	130418506	rs76509441	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.
chr7	130418525	rs76603546	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	0/1:4,12:32:16:0.750:2	0/1:0,5:33:5:1.00:2	./.	./.
chr7	131012699	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:32:36:0.111:2	./.	./.
chr7	131128350	rs202160186	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,11:18:137:0.080:2	./.	0/1:112,18:17:130:0.138:2
chr7	131148080	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,5:26:94:0.053:2	./.	./.
chr7	131190696	rs6651125	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,69:30:69:1.00:2	./.	0/1:29,37:29:66:0.561:2	./.	0/1:47,50:29:97:0.515:2	0/1:33,17:31:50:0.340:2	0/1:22,16:30:38:0.421:2	0/1:30,31:30:61:0.508:2
chr7	131191013	rs77580680	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,64:30:144:0.444:2	./.	0/1:76,50:30:126:0.397:2	./.	./.	./.	./.	./.
chr7	131191461	rs3212300	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,57:32:132:0.432:2	./.	0/1:82,50:33:133:0.379:2	./.	./.	./.	./.	./.
chr7	131194255	rs35893129	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,72:32:172:0.419:2	./.	0/1:93,85:32:178:0.478:2	./.	./.	./.	./.	./.
chr7	131195712	rs12670788	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,186:31:186:1.00:2	0/1:0,180:31:180:1.00:2	0/1:0,27:30:27:1.00:2	0/1:90,106:31:196:0.541:2	0/1:1,184:31:185:0.995:2	./.	0/1:0,187:31:187:1.00:2	0/1:116,79:31:195:0.405:2	./.	0/1:108,82:31:190:0.432:2	0/1:115,74:32:189:0.392:2
chr7	131195959	rs3735035	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,175:32:175:1.00:2	0/1:4,139:32:143:0.972:2	0/1:0,41:32:41:1.00:2	0/1:77,104:32:181:0.575:2	0/1:0,174:31:175:1.00:2	./.	0/1:0,186:32:186:1.00:2	0/1:111,81:32:193:0.422:2	./.	0/1:63,105:31:168:0.625:2	0/1:88,89:32:177:0.503:2
chr7	131196062	rs17744792	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,62:32:109:0.569:2	./.	./.	0/1:40,58:33:98:0.592:2	./.	./.
chr7	131815310	rs2671103	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,144:30:144:1.00:2	0/1:0,90:30:90:1.00:2	0/1:20,11:29:31:0.355:2	0/1:0,129:29:129:1.00:2	0/1:78,48:30:126:0.381:2	0/1:0,140:30:140:1.00:2	0/1:82,57:30:139:0.410:2	0/1:1,132:31:133:0.992:2	0/1:0,142:31:142:1.00:2	./.	0/1:0,141:30:141:1.00:2
chr7	131817850	rs75848889	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,80:30:187:0.428:2	./.	./.	./.	./.	0/1:82,78:30:160:0.488:2	./.	0/1:70,65:30:135:0.481:2
chr7	131864591	rs3734989	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,13:29:35:0.371:2	0/1:13,9:28:22:0.409:2	0/1:5,3:29:8:0.375:2	0/1:0,37:28:37:1.00:2	0/1:0,37:27:37:1.00:2	./.	0/1:27,10:26:37:0.270:2	0/1:28,14:27:42:0.333:2	0/1:41,23:28:64:0.359:2	0/1:22,21:28:43:0.488:2	0/1:27,13:26:40:0.325:2
chr7	131866206	rs17166227	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,95:33:156:0.609:2	./.	./.	./.	./.	./.	./.	./.
chr7	131913187	rs190791576	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,54:31:95:0.574:2	./.	./.	./.	./.
chr7	132070054	rs741664	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,28:31:28:1.00:2	./.	0/1:0,54:32:54:1.00:2	0/1:1,27:32:28:0.964:2	0/1:0,32:31:32:1.00:2	0/1:0,44:31:44:1.00:2	0/1:12,10:27:22:0.455:2	0/1:19,14:32:33:0.424:2
chr7	132192295	rs156961	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,30:29:64:0.469:2	0/1:42,39:30:81:0.481:2	0/1:42,34:29:76:0.447:2	./.	0/1:30,21:29:51:0.412:2	./.
chr7	132192713	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,38:32:79:0.481:2	0/1:13,15:32:28:0.536:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	132192949	rs156962	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,49:29:85:0.576:2	0/1:50,32:28:82:0.390:2	0/1:43,29:29:72:0.403:2	./.	0/1:43,25:30:68:0.368:2	./.
chr7	132193334	rs141077562	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,20:32:39:0.513:2	./.	./.	./.	./.	./.
chr7	132570427	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:30:86:0.047:2	./.	./.	./.
chr7	133580447	rs2042456	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:59,70:32:129:0.543:2	0/1:26,29:32:55:0.527:2	0/1:14,7:31:21:0.333:2	./.	./.	0/1:60,51:30:111:0.459:2	0/1:78,78:31:156:0.500:2	0/1:93,62:31:155:0.400:2	0/1:75,84:32:159:0.528:2	0/1:60,51:31:111:0.459:2	./.
chr7	133749164	rs6953296	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:27,14:33:41:0.341:2	0/1:12,10:32:22:0.455:2	./.	./.	0/1:0,51:30:51:1.00:2	0/1:23,14:31:37:0.378:2	0/1:31,22:31:53:0.415:2	0/1:45,22:29:67:0.328:2	0/1:0,51:32:51:1.00:2	0/1:0,38:30:39:1.00:2	0/1:0,43:31:43:1.00:2
chr7	133848257	rs17167553	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,4:27:10:0.400:2	./.	./.	./.	0/1:17,4:30:21:0.190:2	./.	./.
chr7	133868507	rs1222419	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,175:32:175:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,186:32:186:1.00:2	0/1:0,186:32:186:1.00:2	0/1:0,181:32:181:1.00:2	0/1:0,160:33:160:1.00:2	0/1:0,182:32:182:1.00:2	0/1:0,178:33:178:1.00:2	0/1:0,179:33:180:1.00:2	0/1:0,193:32:193:1.00:2
chr7	133886275	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:31:119:0.034:2
chr7	133906669	rs35149449	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,6:31:12:0.500:2	./.	./.	./.	0/1:20,12:32:32:0.375:2	./.	./.
chr7	133932357	rs34904752	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,49:29:96:0.510:2	./.	./.	./.	./.	./.
chr7	133979795	rs1421484	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,53:28:53:1.00:2	0/1:0,27:27:27:1.00:2	./.	0/1:0,61:29:61:1.00:2	./.	0/1:49,39:28:88:0.443:2	0/1:40,40:29:80:0.500:2	0/1:67,31:28:98:0.316:2	./.	0/1:33,32:28:65:0.492:2	0/1:0,67:27:67:1.00:2
chr7	133981227	rs1862052	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:3,54:32:57:0.947:2	0/1:0,40:32:40:1.00:2	./.	0/1:0,58:31:58:1.00:2	./.	0/1:43,24:30:68:0.358:2	0/1:18,11:30:29:0.379:2	0/1:35,29:29:64:0.453:2	./.	0/1:43,23:32:67:0.348:2	0/1:0,82:32:82:1.00:2
chr7	133989543	rs447266	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:2,46:33:48:0.958:2	0/1:0,42:31:42:1.00:2	./.	0/1:0,54:33:54:1.00:2	./.	0/1:37,32:33:69:0.464:2	0/1:32,11:33:43:0.256:2	0/1:27,17:33:44:0.386:2	./.	0/1:22,20:33:42:0.476:2	0/1:0,73:33:73:1.00:2
chr7	134212672	rs2005412	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,5:29:198:0.026:2	./.	./.
chr7	134212741	rs2037005	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,51:33:113:0.451:2	0/1:46,47:32:93:0.505:2	0/1:13,10:33:23:0.435:2	0/1:3,116:32:119:0.975:2	0/1:0,85:32:85:1.00:2	0/1:79,65:32:144:0.451:2	./.	./.	0/1:61,59:33:120:0.492:2	./.	0/1:96,64:33:160:0.400:2
chr7	134215403	rs1722883	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,55:30:90:0.611:2	0/1:32,20:30:52:0.385:2	0/1:3,6:32:9:0.667:2	0/1:2,76:31:78:0.974:2	0/1:1,78:30:79:0.987:2	0/1:2,85:30:88:0.977:2	./.	./.	0/1:51,49:32:100:0.490:2	./.	0/1:62,59:31:121:0.488:2
chr7	134216684	rs2303312	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,64:30:134:0.478:2	./.	./.	./.	./.	./.
chr7	134221422	rs182129046	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:30:81:0.049:2
chr7	134221826	rs28545160	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:121,20:31:141:0.142:2	0/1:69,5:29:74:0.068:2	./.	0/1:1,22:30:23:0.957:2	0/1:6,25:32:31:0.806:2	0/1:4,34:31:38:0.895:2	./.	./.	0/1:162,16:33:179:0.090:2	./.	0/1:136,24:31:160:0.150:2
chr7	134223684	rs2852177	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:31:132:0.030:2	./.	./.	./.
chr7	134225788	rs4732036	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:8,12:33:20:0.600:2	0/1:21,6:32:27:0.222:2	0/1:1,2:31:3:0.667:2	0/1:19,12:31:31:0.387:2	0/1:0,7:32:7:1.00:2	0/1:0,22:31:22:1.00:2	0/1:8,5:31:13:0.385:2	0/1:14,11:31:25:0.440:2	0/1:20,10:31:30:0.333:2	./.	0/1:22,28:32:51:0.560:2
chr7	134225827	rs4728329	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,19:30:40:0.475:2	0/1:25,9:28:34:0.265:2	0/1:0,9:30:9:1.00:2	0/1:0,56:29:56:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,42:28:42:1.00:2	0/1:15,17:29:32:0.531:2	0/1:31,27:29:58:0.466:2	0/1:50,26:30:76:0.342:2	0/1:29,26:30:55:0.473:2	0/1:0,77:30:77:1.00:2
chr7	134261097	rs2161803	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,31:29:57:0.544:2	0/1:21,7:29:28:0.250:2	./.	0/1:0,41:29:41:1.00:2	0/1:25,7:28:32:0.219:2	0/1:0,39:29:39:1.00:2	0/1:22,12:28:34:0.353:2	./.	0/1:37,33:31:70:0.471:2	0/1:33,25:30:58:0.431:2	./.
chr7	134264286	rs6467538	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,19:32:46:0.413:2	0/1:16,11:32:27:0.407:2	./.	0/1:2,60:31:62:0.968:2	0/1:22,15:31:37:0.405:2	0/1:28,35:31:63:0.556:2	0/1:32,25:31:57:0.439:2	./.	0/1:36,31:31:67:0.463:2	0/1:39,25:32:64:0.391:2	./.
chr7	134346306	rs377445959	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:33:126:0.032:2
chr7	134552474	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:32:90:0.044:2	./.
chr7	134576441	rs6953822	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,34:32:35:0.971:2	0/1:0,29:32:29:1.00:2	0/1:0,6:32:6:1.00:2	0/1:29,23:30:52:0.442:2	0/1:42,34:32:76:0.447:2	0/1:46,38:32:84:0.452:2	0/1:0,65:31:65:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,61:33:61:1.00:2	0/1:25,24:32:49:0.490:2	0/1:0,45:31:45:1.00:2
chr7	134618496	rs61757650	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,25:31:57:0.439:2	./.
chr7	134618673	rs187878127	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,37:31:100:0.370:2	./.	./.	./.
chr7	134618710	rs6973420	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:50,55:29:105:0.524:2	0/1:28,32:29:60:0.533:2	0/1:0,10:29:10:1.00:2	./.	0/1:49,42:29:91:0.462:2	./.	0/1:0,80:29:80:1.00:2	0/1:113,4:31:117:0.034:2	0/1:75,78:30:153:0.510:2	./.	./.
chr7	134632411	rs141179317	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,34:29:60:0.567:2	./.	./.	./.
chr7	134645319	rs2230186	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,31:30:57:0.544:2	./.
chr7	134653087	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:33:124:0.032:2	./.	./.	./.	./.
chr7	134678253	rs2348049	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,51:30:118:0.432:2	0/1:35,46:29:81:0.568:2	0/1:64,66:30:130:0.508:2	./.	0/1:0,104:30:104:1.00:2	0/1:82,50:32:132:0.379:2
chr7	134678327	rs117732894	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,104:32:197:0.528:2
chr7	134701856	rs4236655	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,31:33:31:1.00:2	0/1:0,12:33:12:1.00:2	./.	0/1:0,41:33:41:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,37:33:37:1.00:2	0/1:0,48:33:48:1.00:2	0/1:1,28:33:29:0.966:2	0/1:0,47:32:47:1.00:2	0/1:0,35:31:35:1.00:2
chr7	134719053	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:32:109:0.037:2	./.	./.	./.
chr7	134719551	rs9656447	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,84:33:84:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,110:33:110:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,89:32:89:1.00:2	0/1:1,90:32:91:0.989:2	0/1:0,96:33:97:1.00:2	0/1:0,106:33:106:1.00:2	0/1:0,82:33:82:1.00:2	0/1:0,122:33:122:1.00:2
chr7	134730252	rs117168663	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,83:32:190:0.437:2
chr7	134849209	rs292500	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,77:29:166:0.467:2	./.	./.	./.	./.	./.	./.	./.
chr7	134849213	rs3800592	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,85:32:176:0.483:2	0/1:78,87:32:165:0.527:2	0/1:69,76:32:145:0.524:2	0/1:106,91:32:197:0.462:2	0/1:102,97:32:199:0.487:2	0/1:94,74:33:169:0.440:2	./.	./.
chr7	134849280	rs292501	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,119:30:119:1.00:2	0/1:0,94:31:94:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,160:30:160:1.00:2	0/1:0,154:30:154:1.00:2	0/1:0,176:30:176:1.00:2	0/1:0,147:30:147:1.00:2	0/1:4,156:30:160:0.975:2	0/1:0,163:31:163:1.00:2	0/1:0,159:31:159:1.00:2	0/1:0,128:31:128:1.00:2
chr7	134849577	rs2288237	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,37:30:89:0.416:2	0/1:68,45:29:113:0.398:2	0/1:71,51:30:122:0.418:2	0/1:69,29:28:98:0.296:2	0/1:79,35:29:114:0.307:2	0/1:55,54:30:109:0.495:2	./.	./.
chr7	134850465	rs1647818	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,67:30:68:0.985:2	0/1:0,41:30:41:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,94:30:94:1.00:2	0/1:0,65:30:65:1.00:2	0/1:0,65:30:65:1.00:2	0/1:0,75:30:75:1.00:2	0/1:1,92:30:94:0.989:2	0/1:0,76:31:76:1.00:2	0/1:0,77:30:77:1.00:2	0/1:0,84:30:85:1.00:2
chr7	134850469	rs1646982	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:28:71:1.00:2	0/1:0,40:28:40:1.00:2	0/1:0,11:28:11:1.00:2	0/1:0,101:28:101:1.00:2	0/1:0,64:29:65:1.00:2	0/1:0,72:29:72:1.00:2	0/1:0,83:28:83:1.00:2	0/1:2,100:29:102:0.980:2	0/1:0,82:29:82:1.00:2	0/1:0,75:28:75:1.00:2	0/1:0,89:28:89:1.00:2
chr7	134850608	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,53:32:90:0.589:2	./.	./.
chr7	134852556	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:31:128:0.031:2	./.	./.	./.	./.	./.
chr7	134871775	rs292557	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,8:30:8:1.00:2	0/1:49,29:32:78:0.372:2	0/1:0,53:31:53:1.00:2	0/1:65,46:32:111:0.414:2	0/1:43,26:32:69:0.377:2	./.	0/1:2,74:34:76:0.974:2	./.	0/1:42,47:33:90:0.528:2
chr7	134871824	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,27:31:71:0.380:2	./.	./.	./.	./.	./.	./.	./.
chr7	134879830	rs292575	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,54:31:56:0.964:2	0/1:0,40:32:40:1.00:2	0/1:0,11:31:11:1.00:2	0/1:46,35:31:81:0.432:2	0/1:0,60:30:60:1.00:2	0/1:23,24:30:47:0.511:2	0/1:58,32:30:90:0.356:2	./.	0/1:0,63:32:63:1.00:2	./.	0/1:38,36:31:74:0.486:2
chr7	134889141	rs292592	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:32:65:1.00:2	0/1:1,30:32:31:0.968:2	0/1:0,4:30:4:1.00:2	0/1:34,28:31:62:0.452:2	0/1:0,63:32:63:1.00:2	0/1:31,29:31:60:0.483:2	0/1:46,28:32:74:0.378:2	./.	0/1:0,62:33:62:1.00:2	./.	0/1:25,23:32:48:0.479:2
chr7	134891961	rs2278130	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,26:31:53:0.491:2	./.	0/1:21,23:30:44:0.523:2	0/1:24,21:32:45:0.467:2	0/1:0,50:32:50:1.00:2	./.	0/1:0,33:32:33:1.00:2	0/1:35,17:32:52:0.327:2
chr7	134896134	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:33:66:0.061:2	./.	./.	./.	./.	./.
chr7	134925411	rs7805859	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,58:30:115:0.504:2	0/1:87,59:30:146:0.404:2	0/1:68,75:29:144:0.524:2	0/1:68,56:30:125:0.452:2	0/1:109,72:30:181:0.398:2	./.	0/1:0,90:31:91:1.00:2	0/1:61,41:30:102:0.402:2
chr7	135047703	rs6969632	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:27:24:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,23:30:23:1.00:2	0/1:1,16:28:17:0.941:2	0/1:1,30:28:31:0.968:2	0/1:1,7:29:8:0.875:2	0/1:1,43:29:44:0.977:2	0/1:0,19:30:19:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,31:29:31:1.00:2
chr7	135082953	rs77841106	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,18:33:29:0.621:2	0/1:9,11:32:20:0.550:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,16:33:41:0.400:2
chr7	135255942	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,4:30:84:0.048:2	./.	./.	./.	./.	./.	./.
chr7	135261765	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:32:103:0.039:2	./.
chr7	135261822	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:33:120:0.033:2	./.
chr7	135262681	rs12707242	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,62:31:151:0.411:2	./.	./.	./.	./.	./.	./.	./.
chr7	135272356	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.	./.	./.	./.
chr7	135279315	rs7800214	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:25,37:34:62:0.597:2	0/1:15,14:32:29:0.483:2	0/1:0,6:31:6:1.00:2	./.	0/1:1,29:31:30:0.967:2	0/1:0,43:31:43:1.00:2	0/1:0,35:33:35:1.00:2	0/1:23,20:32:43:0.465:2	0/1:29,21:32:50:0.420:2	0/1:0,31:31:31:1.00:2	0/1:31,27:30:58:0.466:2
chr7	135286170	rs35467082	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,47:30:136:0.346:2	./.	./.	./.	./.	./.	./.	./.
chr7	135287552	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:33:46:0.087:2
chr7	135304273	rs7810767	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:33:81:1.00:2	0/1:0,41:33:41:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,86:33:86:1.00:2	0/1:0,81:33:81:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,110:32:110:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,99:34:99:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,104:32:104:1.00:2
chr7	135329690	rs12540688	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,69:32:133:0.519:2	0/1:36,39:32:75:0.520:2	./.	./.	./.	./.	./.	./.	0/1:111,77:33:188:0.410:2	./.	0/1:91,103:32:194:0.531:2
chr7	135357476	rs3110823	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,74:32:168:0.440:2	./.	./.	./.
chr7	135366441	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:31:122:0.033:2	./.	./.	./.
chr7	135376041	rs36004833	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,44:30:101:0.436:2	./.	./.	./.
chr7	135387656	rs3112347	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:8,12:31:20:0.600:2	0/1:1,7:32:8:0.875:2	0/1:0,4:31:4:1.00:2	./.	0/1:0,19:31:19:1.00:2	0/1:15,13:31:28:0.464:2	0/1:0,33:31:33:1.00:2	0/1:0,21:31:21:1.00:2	0/1:14,11:32:25:0.440:2	0/1:6,7:32:13:0.538:2	0/1:0,31:31:31:1.00:2
chr7	135392876	rs3110800	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:36,29:32:65:0.446:2	0/1:10,15:31:25:0.600:2	0/1:0,8:32:8:1.00:2	./.	0/1:0,99:32:99:1.00:2	0/1:38,46:32:84:0.548:2	0/1:0,102:32:102:1.00:2	0/1:1,107:32:108:0.991:2	0/1:47,44:33:91:0.484:2	0/1:40,24:32:64:0.375:2	0/1:0,78:32:78:1.00:2
chr7	135406176	rs4596594	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,99:32:101:0.980:2	0/1:0,88:32:88:1.00:2	0/1:10,9:33:19:0.474:2	./.	0/1:1,146:31:147:0.993:2	0/1:68,59:32:127:0.465:2	0/1:1,158:31:159:0.994:2	0/1:3,151:31:154:0.981:2	0/1:73,69:33:142:0.486:2	0/1:74,50:32:124:0.403:2	0/1:57,48:31:105:0.457:2
chr7	135421898	rs35676241	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,15:30:40:0.375:2	./.
chr7	135614150	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,30:31:60:0.500:2	./.	./.	./.	./.	./.
chr7	135614474	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,27:32:48:0.563:2	./.	./.	./.	./.	./.
chr7	135614529	rs113407154	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,17:33:32:0.531:2	0/1:12,14:32:26:0.538:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	135614740	rs17168527	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,17:33:37:0.459:2
chr7	135661812	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:33:111:0.036:2	./.	./.
chr7	136701308	rs8191992	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:31:7:1.00:2	0/1:38,38:31:76:0.500:2	0/1:26,20:29:46:0.435:2	0/1:31,26:31:57:0.456:2	0/1:1,51:31:52:0.981:2	0/1:22,22:30:44:0.500:2	0/1:34,45:32:79:0.570:2	0/1:33,22:32:55:0.400:2	0/1:3,103:32:107:0.972:2
chr7	136701563	rs8191993	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,12:33:12:1.00:2	0/1:41,35:33:76:0.461:2	0/1:31,16:33:47:0.340:2	0/1:0,67:33:67:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,57:33:57:1.00:2	0/1:51,35:34:86:0.407:2	0/1:27,23:32:50:0.460:2	0/1:0,75:33:75:1.00:2
chr7	136701634	rs76518506	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,9:32:25:0.360:2	0/1:12,17:30:29:0.586:2	./.
chr7	136938249	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:32:53:0.075:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	137092670	rs76989323	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,57:31:117:0.487:2	./.	./.	./.	./.	./.
chr7	137128830	rs1918837	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,101:33:104:0.981:2	0/1:1,45:31:46:0.978:2	./.	./.	./.	0/1:39,58:33:97:0.598:2	0/1:39,38:33:77:0.494:2	0/1:1,126:33:127:0.992:2
chr7	137150665	rs35245703	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,12:33:31:0.387:2	./.
chr7	137255996	rs863082	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,9:32:22:0.409:2	./.	./.	0/1:63,65:31:128:0.508:2	./.	0/1:62,86:32:148:0.581:2	./.	0/1:71,66:33:137:0.482:2	./.
chr7	137363356	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,5:31:44:0.116:2
chr7	137565284	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:33:92:0.043:2	./.
chr7	137600690	rs273957	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,128:32:128:1.00:2	0/1:0,86:31:86:1.00:2	0/1:0,24:31:24:1.00:2	0/1:105,88:31:193:0.456:2	0/1:98,71:30:169:0.420:2	0/1:0,171:30:171:1.00:2	0/1:0,175:31:175:1.00:2	0/1:113,81:31:194:0.418:2	0/1:103,91:31:194:0.469:2	0/1:0,118:31:118:1.00:2	0/1:0,191:31:191:1.00:2
chr7	137798426	rs17169518	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,18:30:36:0.500:2	./.	./.	0/1:27,28:32:55:0.509:2	./.	./.	./.
chr7	137801413	rs1872929	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:30:40:1.00:2	0/1:0,24:28:24:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,31:29:31:1.00:2	0/1:3,23:27:26:0.885:2	0/1:18,14:28:32:0.438:2	0/1:2,34:29:36:0.944:2	0/1:0,41:29:41:1.00:2	0/1:29,10:27:39:0.256:2	0/1:0,31:29:31:1.00:2	0/1:1,49:28:50:0.980:2
chr7	138252385	rs79325894	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,9:15:59:0.153:2
chr7	138265310	rs33935215	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,28:32:71:0.394:2	./.	./.	0/1:37,38:33:75:0.507:2	./.	./.
chr7	138305806	rs3734944	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:16,13:27:29:0.448:2	0/1:9,12:30:21:0.571:2	0/1:3,8:30:11:0.727:2	./.	./.	0/1:29,27:30:56:0.482:2	0/1:30,10:30:40:0.250:2	0/1:27,28:29:55:0.509:2	0/1:1,33:29:34:0.971:2	./.	0/1:23,19:28:42:0.452:2
chr7	138312122	rs2305816	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,16:30:33:0.485:2	0/1:8,12:30:20:0.600:2	0/1:1,5:33:6:0.833:2	0/1:15,14:33:29:0.483:2	0/1:0,20:32:20:1.00:2	./.	0/1:18,11:33:29:0.379:2	0/1:17,19:33:36:0.528:2	0/1:0,25:34:25:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,48:33:48:1.00:2
chr7	138314780	rs1659808	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:32:3:0.667:2	0/1:11,12:31:23:0.522:2	./.	0/1:11,15:30:26:0.577:2	./.	./.	./.	./.	./.
chr7	138329571	rs144481050	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,18:31:57:0.316:2	./.	./.	./.	./.
chr7	138333759	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:33:140:0.029:2	./.	./.	./.	./.
chr7	138363767	rs10250576	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,72:30:72:1.00:2	0/1:0,66:30:67:1.00:2	./.	0/1:47,38:30:85:0.447:2	./.	./.	0/1:66,31:29:97:0.320:2	0/1:69,68:30:137:0.496:2	./.	./.	0/1:60,52:30:112:0.464:2
chr7	138417718	rs3807154	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,17:30:58:0.293:2	0/1:30,16:29:46:0.348:2	0/1:5,3:31:8:0.375:2	0/1:47,40:29:87:0.460:2	0/1:0,84:29:84:1.00:2	0/1:0,91:30:91:1.00:2	0/1:44,56:30:100:0.560:2	0/1:2,93:29:95:0.979:2	0/1:0,89:30:89:1.00:2	0/1:31,29:29:60:0.483:2	0/1:50,40:29:90:0.444:2
chr7	138417791	rs3807153	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,5:29:9:0.556:2	0/1:48,37:31:85:0.435:2	./.	./.	./.	./.	./.	0/1:21,25:30:46:0.543:2	0/1:62,36:30:98:0.367:2
chr7	138418910	rs1026435	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,28:32:65:0.431:2	0/1:25,23:32:48:0.479:2	0/1:10,8:31:18:0.444:2	0/1:49,30:32:81:0.380:2	0/1:0,74:31:74:1.00:2	0/1:0,68:31:68:1.00:2	0/1:1,81:32:82:0.988:2	0/1:0,68:32:68:1.00:2	0/1:0,82:33:82:1.00:2	0/1:38,34:32:72:0.472:2	0/1:51,63:32:114:0.553:2
chr7	138455988	rs10258719	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,30:32:30:1.00:2	0/1:2,24:30:26:0.923:2	0/1:0,2:32:2:1.00:2	./.	0/1:21,17:30:38:0.447:2	0/1:1,33:31:34:0.971:2	0/1:25,16:31:41:0.390:2	0/1:32,21:31:53:0.396:2	0/1:0,44:31:44:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,36:31:36:1.00:2
chr7	138486096	rs61729750	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,42:32:42:1.00:2	0/1:0,19:32:19:1.00:2	./.	0/1:32,30:32:62:0.484:2	0/1:26,32:32:58:0.552:2	0/1:0,52:32:52:1.00:2	0/1:0,47:32:47:1.00:2	0/1:32,32:31:64:0.500:2	./.	0/1:0,44:33:44:1.00:2	./.
chr7	138545996	rs12707399	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:12,5:34:17:0.294:2	0/1:5,11:32:16:0.688:2	./.	0/1:10,14:32:24:0.583:2	./.	./.	./.	./.	0/1:9,11:33:20:0.550:2	./.	./.
chr7	138554395	.	G	A,T	.	PASS	AC=1,1;AF=0.167,0.167;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0/2:29:81:0.049:2	./.	0/1:31:112:0.536:2	./.	./.	./.	./.	./.
chr7	138583840	rs7802841	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,62:33:118:0.525:2	0/1:37,48:32:85:0.565:2	0/1:1,14:32:15:0.933:2	0/1:93,60:33:153:0.392:2	0/1:1,150:32:151:0.993:2	0/1:51,105:32:156:0.673:2	./.	0/1:92,97:32:189:0.513:2	0/1:89,71:34:160:0.444:2	0/1:0,125:33:125:1.00:2	0/1:0,149:33:149:1.00:2
chr7	138589842	rs117618554	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,10:32:11:0.909:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	138596001	rs16873582	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,23:32:45:0.511:2	0/1:49,28:32:77:0.364:2	./.	./.	./.	./.	0/1:43,42:33:85:0.494:2
chr7	138596064	rs6969074	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,8:32:26:0.308:2	0/1:15,14:31:29:0.483:2	./.	0/1:34,10:31:44:0.227:2	0/1:0,15:31:15:1.00:2	0/1:19,7:31:26:0.269:2	0/1:2,28:32:30:0.933:2	0/1:24,26:32:50:0.520:2	0/1:0,37:33:37:1.00:2	./.	0/1:16,15:33:32:0.484:2
chr7	138601572	rs2150283	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,55:30:160:0.344:2	./.	./.	./.	./.
chr7	138601706	rs2354336	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,51:31:99:0.515:2	./.	./.	./.	./.
chr7	138601826	rs2251220	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,17:31:29:0.586:2	0/1:8,6:30:14:0.429:2	./.	0/1:13,19:32:32:0.594:2	0/1:1,20:32:21:0.952:2	0/1:23,27:31:50:0.540:2	0/1:22,23:30:45:0.511:2	0/1:20,17:31:37:0.459:2	0/1:0,38:32:38:1.00:2	./.	0/1:24,13:32:37:0.351:2
chr7	138602056	rs61746877	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,36:33:60:0.600:2	./.	./.	./.	./.
chr7	138602071	rs61746879	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,35:30:65:0.538:2	./.	./.	./.	./.
chr7	138602417	rs2774960	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,17:33:30:0.567:2	0/1:7,6:32:13:0.462:2	./.	0/1:13,14:32:27:0.519:2	0/1:0,20:32:20:1.00:2	0/1:17,14:32:31:0.452:2	0/1:12,11:30:23:0.478:2	0/1:21,13:33:34:0.382:2	0/1:0,20:34:20:1.00:2	./.	0/1:15,27:32:43:0.643:2
chr7	138602432	rs61734132	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,10:32:24:0.417:2	./.	./.	./.	./.
chr7	138602523	rs2774962	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,22:31:50:0.440:2	0/1:10,14:30:24:0.583:2	./.	0/1:41,17:30:58:0.293:2	0/1:0,32:31:32:1.00:2	0/1:31,24:30:55:0.436:2	0/1:1,21:30:22:0.955:2	0/1:24,19:31:43:0.442:2	0/1:0,54:32:54:1.00:2	./.	0/1:46,36:29:82:0.439:2
chr7	138602916	rs2718131	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:30,36:30:66:0.545:2	0/1:15,21:28:36:0.583:2	./.	0/1:37,28:31:65:0.431:2	./.	./.	0/1:27,17:30:44:0.386:2	0/1:29,16:31:45:0.356:2	0/1:35,22:30:57:0.386:2	./.	./.
chr7	138603282	rs59985563	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,98:33:99:0.990:2	0/1:79,62:33:141:0.440:2	0/1:84,74:33:158:0.468:2	./.	0/1:80,55:34:135:0.407:2	./.	0/1:65,48:33:113:0.425:2
chr7	138713476	rs17856272	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,21:31:67:0.313:2	0/1:50,41:30:91:0.451:2	0/1:52,24:30:77:0.316:2	./.	0/1:59,52:32:111:0.468:2	./.	./.
chr7	138732457	rs3735008	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,26:31:75:0.347:2	0/1:27,36:32:63:0.571:2	0/1:0,10:31:10:1.00:2	0/1:1,91:31:92:0.989:2	0/1:3,54:31:57:0.947:2	0/1:0,81:31:81:1.00:2	./.	./.	0/1:0,75:32:75:1.00:2	0/1:29,34:31:63:0.540:2	0/1:54,36:32:90:0.400:2
chr7	138732497	rs3735007	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,61:31:61:1.00:2	0/1:1,47:31:48:0.979:2	0/1:0,58:31:58:1.00:2	./.	./.	0/1:0,61:32:61:1.00:2	0/1:23,32:32:55:0.582:2	0/1:37,25:31:62:0.403:2
chr7	138740037	rs2297236	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:33:33:1.00:2	0/1:0,5:34:5:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,37:32:37:1.00:2	0/1:12,12:33:24:0.500:2	./.	0/1:0,26:33:26:1.00:2	0/1:9,21:33:30:0.700:2	0/1:24,16:33:40:0.400:2
chr7	138761034	rs2297241	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,46:33:102:0.451:2	./.	./.	0/1:55,32:34:87:0.368:2	./.
chr7	138764233	rs2236426	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,65:31:114:0.570:2	./.	./.	0/1:53,42:31:95:0.442:2	./.
chr7	138967814	rs61995684	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,39:29:69:0.565:2	0/1:25,14:28:39:0.359:2	./.	./.	./.	./.	./.	0/1:38,31:31:69:0.449:2
chr7	139026152	rs10265	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,12:33:12:1.00:2	0/1:0,15:32:15:1.00:2	./.	./.	0/1:0,20:33:20:1.00:2	0/1:5,16:34:21:0.762:2	./.	./.
chr7	139138871	rs11763327	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,5:34:15:0.333:2	./.	./.	0/1:0,20:31:20:1.00:2	0/1:0,4:30:4:1.00:2	./.	./.	0/1:1,15:31:16:0.938:2	./.	./.	0/1:7,6:30:13:0.462:2
chr7	139138950	rs17160911	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:35:4:0.500:2
chr7	139167934	rs1860150	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr7	139225127	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:30:50:0.080:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	139268735	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:32:180:0.022:2
chr7	139316360	rs28579164	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,45:33:73:0.616:2	./.	./.	./.	./.	0/1:32,25:33:57:0.439:2	0/1:27,25:32:52:0.481:2	./.
chr7	139415775	rs7456421	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,14:32:27:0.519:2	./.	./.	./.	0/1:92,101:32:193:0.523:2	./.	./.	./.	./.
chr7	139415943	rs4074826	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,13:32:24:0.542:2	./.	./.	./.	0/1:94,74:32:168:0.440:2	./.	./.	./.	./.
chr7	139653196	rs5768	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:32:60:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,78:33:78:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,86:33:87:1.00:2
chr7	139715641	rs8192868	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,9:30:16:0.563:2	./.	./.	./.	./.
chr7	139717500	rs41311778	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,32:32:55:0.582:2	./.	./.
chr7	139724358	rs2269996	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,33:32:75:0.440:2	./.	./.	0/1:56,31:32:87:0.356:2	./.	./.	0/1:41,27:32:68:0.397:2	./.
chr7	139724555	rs3735352	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,73:30:149:0.490:2	./.	./.	./.	./.	./.	0/1:36,47:31:83:0.566:2	./.
chr7	139727135	rs2286196	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,55:31:108:0.509:2	./.	./.	0/1:59,36:31:95:0.379:2	./.	./.	0/1:68,28:31:96:0.292:2	./.
chr7	139734069	rs35456446	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,23:31:55:0.418:2	./.	./.	./.	./.	./.	./.
chr7	139746793	rs34111764	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,26:31:58:0.448:2	./.	./.	./.	./.
chr7	139757712	rs61729681	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,54:32:105:0.514:2	./.	./.	./.
chr7	139797431	rs6950119	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,48:31:48:1.00:2	0/1:0,26:32:26:1.00:2	./.	./.	./.	./.	0/1:2,48:32:50:0.960:2	./.	./.	0/1:34,23:32:57:0.404:2	0/1:52,31:32:83:0.373:2
chr7	139801777	rs1062277	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,114:30:114:1.00:2	0/1:1,63:28:64:0.984:2	./.	./.	./.	./.	0/1:2,108:29:110:0.982:2	./.	./.	0/1:77,75:30:152:0.493:2	0/1:67,89:29:156:0.571:2
chr7	140037162	rs73737575	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,17:33:41:0.415:2	./.	./.	./.	./.	./.	./.
chr7	140051091	rs12703775	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,45:31:99:0.455:2	0/1:38,21:32:59:0.356:2	0/1:7,4:32:11:0.364:2	0/1:59,55:32:114:0.482:2	0/1:55,51:32:106:0.481:2	./.	0/1:0,88:32:88:1.00:2	./.	0/1:2,110:32:112:0.982:2	./.	./.
chr7	140080087	rs62490396	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,20:34:44:0.455:2	0/1:15,9:32:24:0.375:2	0/1:3,4:32:7:0.571:2	0/1:30,30:33:60:0.500:2	0/1:31,39:33:70:0.557:2	./.	0/1:0,56:32:56:1.00:2	./.	0/1:4,44:33:48:0.917:2	./.	./.
chr7	140110781	rs2971689	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:13,12:30:25:0.480:2	0/1:8,13:31:21:0.619:2	./.	./.	./.	./.	./.	0/1:27,23:29:50:0.460:2	./.	0/1:18,6:32:24:0.250:2	./.
chr7	140111777	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,17:33:36:0.472:2	0/1:8,7:32:15:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	140125750	rs2948386	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:31,18:32:49:0.367:2	0/1:24,17:33:41:0.415:2	0/1:2,5:32:7:0.714:2	./.	0/1:24,19:28:43:0.442:2	./.	0/1:26,17:32:43:0.395:2	0/1:0,64:31:64:1.00:2	./.	0/1:19,22:32:41:0.537:2	./.
chr7	140125839	rs4726807	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,38:31:69:0.551:2	./.	./.
chr7	140158851	rs2272095	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,40:32:93:0.430:2	./.	./.	0/1:33,41:32:74:0.554:2	./.	0/1:29,30:34:59:0.508:2	0/1:30,33:32:63:0.524:2	0/1:32,29:32:61:0.475:2
chr7	140159643	rs143237010	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2	./.	./.	./.
chr7	140159721	rs10243155	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,35:32:79:0.443:2	./.	./.	./.	./.	0/1:56,55:33:111:0.495:2
chr7	140219427	rs12538386	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,12:32:26:0.462:2	./.	./.	./.	./.	0/1:31,20:29:51:0.392:2
chr7	140227214	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:75,9:15:84:0.107:2	./.	./.	./.	./.	./.	./.	0/1:95,12:16:108:0.112:2	./.	./.	./.
chr7	140227293	rs6464833	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,17:31:62:0.274:2	./.	./.	./.	0/1:33,15:32:48:0.313:2	0/1:19,11:31:30:0.367:2
chr7	140244560	rs2293177	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,14:29:51:0.275:2	./.	0/1:30,18:29:48:0.375:2	./.	./.	0/1:0,52:31:52:1.00:2	./.	./.
chr7	140258000	rs12704003	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,23:29:63:0.365:2	0/1:17,8:27:25:0.320:2	0/1:0,5:29:5:1.00:2	0/1:49,33:29:82:0.402:2	0/1:0,48:29:48:1.00:2	./.	0/1:37,32:30:69:0.464:2	0/1:0,87:29:87:1.00:2	./.	./.	0/1:41,28:31:69:0.406:2
chr7	140267023	rs17161631	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,19:29:37:0.514:2	./.	./.	./.	0/1:21,11:30:32:0.344:2	./.
chr7	140301731	rs269243	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,43:29:90:0.478:2	0/1:30,23:30:53:0.434:2	0/1:0,11:30:11:1.00:2	0/1:79,45:29:125:0.363:2	0/1:0,82:29:82:1.00:2	0/1:0,114:29:115:1.00:2	0/1:0,92:29:93:1.00:2	0/1:1,115:30:117:0.991:2	0/1:2,92:30:96:0.979:2	0/1:2,89:28:91:0.978:2	0/1:2,78:29:84:0.975:2
chr7	140373326	rs2968558	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	140374049	rs1140034	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:8,5:33:13:0.385:2	0/1:4,3:31:7:0.429:2	./.	./.	./.	./.	0/1:6,15:33:21:0.714:2	./.	./.	./.	./.
chr7	140374064	rs140400082	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,4:33:16:0.250:2	./.	./.	./.	./.	./.	./.
chr7	140402677	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:31:105:0.038:2	./.
chr7	140439717	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:32:44:0.091:2	./.
chr7	140439727	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:32:35:0.114:2	./.
chr7	140449140	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:33:106:0.038:2	./.	./.
chr7	140449150	rs9648696	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,26:31:51:0.510:2	./.	./.	./.	0/1:53,51:33:104:0.490:2	./.	./.
chr7	140477818	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:32:69:0.058:2	./.
chr7	140481427	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:33:109:0.037:2	./.	./.	./.
chr7	141364712	rs2286150	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:32:11:0.455:2	./.	./.	./.	./.	0/1:88,47:32:135:0.348:2	./.	./.	./.
chr7	141420768	rs6967301	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,25:30:53:0.472:2	0/1:10,20:28:30:0.667:2	0/1:0,12:29:12:1.00:2	0/1:1,60:29:61:0.984:2	0/1:0,63:29:63:1.00:2	./.	0/1:41,43:29:84:0.512:2	0/1:35,44:29:79:0.557:2	0/1:48,34:31:82:0.415:2	0/1:33,31:29:64:0.484:2	./.
chr7	141439003	rs75358342	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,25:31:25:1.00:2	./.	0/1:28,12:32:40:0.300:2	0/1:17,10:33:27:0.370:2	0/1:17,16:32:34:0.485:2	./.
chr7	141464765	rs2270009	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,100:30:104:0.962:2	./.	0/1:56,46:31:102:0.451:2	0/1:76,61:33:137:0.445:2	0/1:63,41:32:104:0.394:2	0/1:80,60:32:140:0.429:2
chr7	141464810	rs76494765	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,34:30:73:0.466:2	./.	./.	./.
chr7	141478308	rs2233998	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,56:32:57:0.982:2	./.	0/1:43,38:33:81:0.469:2	0/1:34,46:33:80:0.575:2	0/1:33,24:32:57:0.421:2	0/1:55,39:32:94:0.415:2
chr7	141478574	rs2234001	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,185:32:188:0.984:2	./.	0/1:1,178:33:179:0.994:2	0/1:108,79:33:187:0.422:2	0/1:87,70:33:157:0.446:2	0/1:119,75:33:194:0.387:2
chr7	141478800	rs2234002	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:98,4:33:102:0.039:2	./.	./.	./.	0/1:4,180:31:184:0.978:2	0/1:180,7:32:187:0.037:2	0/1:5,185:31:190:0.974:2	0/1:98,89:32:187:0.476:2	0/1:85,75:32:160:0.469:2	0/1:97,91:32:189:0.484:2
chr7	141490219	rs2234013	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,44:33:100:0.440:2	0/1:30,30:33:60:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	141490238	rs2227264	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,63:31:63:1.00:2	0/1:89,6:32:95:0.063:2	0/1:70,42:32:112:0.375:2	0/1:62,50:32:112:0.446:2	0/1:50,42:32:92:0.457:2	0/1:68,67:32:135:0.496:2
chr7	141537735	rs12669721	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,186:32:189:0.984:2	./.	0/1:1,190:32:191:0.995:2	0/1:95,93:32:189:0.495:2	0/1:90,102:33:192:0.531:2	0/1:96,88:32:184:0.478:2
chr7	141619116	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:126,4:32:130:0.031:2	./.	./.	./.	./.	./.	./.
chr7	141672604	rs10246939	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:27:6:0.500:2	./.	./.	0/1:3,111:29:114:0.974:2	0/1:67,50:29:117:0.427:2	0/1:53,58:29:111:0.523:2	0/1:0,66:30:66:1.00:2	0/1:29,33:30:62:0.532:2	0/1:0,66:29:66:1.00:2
chr7	141672705	rs1726866	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,68:31:69:0.986:2	0/1:0,56:32:56:1.00:2	0/1:2,5:30:7:0.714:2	0/1:1,100:32:101:0.990:2	0/1:1,87:30:88:0.989:2	./.	0/1:60,52:31:112:0.464:2	0/1:63,58:31:121:0.479:2	./.	0/1:48,34:31:82:0.415:2	./.
chr7	141673345	rs713598	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	./.	0/1:1,67:32:68:0.985:2	0/1:16,23:32:39:0.590:2	0/1:27,35:31:62:0.565:2	0/1:0,56:32:57:1.00:2	0/1:28,18:32:46:0.391:2	0/1:28,31:31:60:0.525:2
chr7	141673363	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:31:54:0.074:2	./.	./.	./.
chr7	141720822	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.	./.	./.
chr7	141747658	rs2960746	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:33:22:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,44:33:44:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,56:33:56:1.00:2	0/1:0,43:33:43:1.00:2	./.	0/1:0,52:34:52:1.00:2	0/1:0,44:33:44:1.00:2	0/1:0,47:34:47:1.00:2
chr7	141750601	rs115785937	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,5:30:190:0.026:2	./.	./.
chr7	141752213	rs2961085	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:33:8:0.375:2	0/1:39,25:33:64:0.391:2	./.	0/1:37,34:32:71:0.479:2	./.	0/1:1,55:32:56:0.982:2	0/1:34,18:34:52:0.346:2	0/1:18,27:33:45:0.600:2	0/1:42,28:33:71:0.400:2
chr7	141752215	rs116536012	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,31:33:58:0.534:2	./.	./.	./.
chr7	141752733	rs150559219	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,64:31:137:0.471:2	./.	./.	./.	./.
chr7	141752736	rs370760214	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,46:30:107:0.430:2	0/1:40,44:30:84:0.524:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	141755358	rs67998329	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:41,42:33:83:0.506:2	0/1:30,22:32:52:0.423:2	./.	./.	./.	./.	./.	0/1:53,64:33:117:0.547:2	./.	./.	./.
chr7	141759274	rs2960758	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:106,19:29:125:0.152:2	./.	0/1:130,13:28:143:0.091:2	0/1:129,16:27:145:0.110:2	0/1:128,22:30:150:0.147:2	0/1:119,19:27:138:0.138:2	0/1:88,15:29:103:0.146:2	0/1:100,27:30:127:0.213:2
chr7	141759340	rs2961074	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,3:32:24:0.125:2	0/1:164,24:32:188:0.128:2	./.	0/1:169,24:30:193:0.124:2	0/1:174,18:31:192:0.094:2	0/1:164,22:29:186:0.118:2	0/1:157,35:31:192:0.182:2	0/1:157,31:29:188:0.165:2	0/1:156,31:31:187:0.166:2
chr7	141759676	rs62477620	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:84,91:29:175:0.520:2	0/1:55,49:29:104:0.471:2	./.	./.	./.	./.	./.	0/1:95,89:30:184:0.484:2	./.	./.	./.
chr7	141796131	rs6975672	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,153:31:177:0.864:2	0/1:15,78:31:93:0.839:2	0/1:2,23:30:25:0.920:2	0/1:27,165:31:192:0.859:2	0/1:24,137:30:161:0.851:2	0/1:147,50:30:197:0.254:2	0/1:133,63:31:196:0.321:2	0/1:70,122:30:192:0.635:2	0/1:136,56:31:192:0.292:2	0/1:69,123:31:192:0.641:2	0/1:3,182:31:185:0.984:2
chr7	141796215	rs199885850	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2	./.	./.	./.	./.
chr7	141952110	rs1052406	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:34:3:0.667:2	0/1:21,9:33:30:0.300:2	0/1:1,18:30:19:0.947:2	0/1:0,40:31:40:1.00:2	0/1:25,15:33:40:0.375:2	./.	./.	0/1:19,13:33:32:0.406:2	0/1:38,23:32:61:0.377:2
chr7	141955128	rs1894317	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,19:30:48:0.396:2	0/1:28,19:31:47:0.404:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	141957504	rs7786497	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:37,36:33:73:0.493:2	0/1:14,25:31:39:0.641:2	./.	0/1:34,35:33:69:0.507:2	./.	./.	./.	0/1:58,42:32:100:0.420:2	0/1:52,63:33:115:0.548:2	0/1:27,42:32:69:0.609:2	./.
chr7	142458437	rs372637371	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:139,14:33:153:0.092:2	./.	0/1:40,5:31:45:0.111:2	0/1:161,6:31:167:0.036:2	0/1:159,8:33:167:0.048:2	0/1:150,13:33:163:0.080:2	./.	0/1:154,26:32:181:0.144:2	0/1:156,12:32:168:0.071:2	./.	./.
chr7	142458451	rs111033566	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:102,41:31:143:0.287:2	0/1:55,23:32:78:0.295:2	0/1:36,9:32:45:0.200:2	0/1:104,39:30:143:0.273:2	0/1:91,51:31:142:0.359:2	0/1:105,26:32:131:0.198:2	0/1:92,30:31:122:0.246:2	0/1:119,26:32:145:0.179:2	0/1:110,30:33:140:0.214:2	0/1:110,38:32:148:0.257:2	0/1:98,33:31:131:0.252:2
chr7	142458486	rs369646357	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:98,19:30:117:0.162:2	0/1:53,10:31:63:0.159:2	./.	0/1:145,20:32:165:0.121:2	0/1:107,15:31:122:0.123:2	0/1:112,10:30:122:0.082:2	0/1:112,14:30:126:0.111:2	0/1:161,9:31:170:0.053:2	0/1:130,9:32:139:0.065:2	0/1:103,12:32:115:0.104:2	0/1:139,13:29:152:0.086:2
chr7	142458511	rs138464021	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,13:31:91:0.143:2	./.	0/1:21,4:32:25:0.160:2	0/1:168,6:31:174:0.034:2	0/1:115,8:31:123:0.065:2	0/1:118,12:31:130:0.092:2	./.	0/1:135,17:31:152:0.112:2	0/1:138,6:31:144:0.042:2	./.	./.
chr7	142459626	rs145867820	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:71,4:30:75:0.053:2	./.	./.	./.	0/1:166,8:32:174:0.046:2	0/1:141,4:31:145:0.028:2	0/1:179,6:32:185:0.032:2	0/1:161,7:32:168:0.042:2	./.	./.	./.
chr7	142459667	rs142476093	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:117,4:31:121:0.033:2	./.	./.	./.	0/1:180,7:32:187:0.037:2	./.	./.	./.	./.	./.	./.
chr7	142459679	rs376671702	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:117,12:31:129:0.093:2	0/1:76,4:29:80:0.050:2	0/1:24,3:30:27:0.111:2	0/1:169,22:31:191:0.115:2	0/1:161,24:30:185:0.130:2	0/1:166,21:31:187:0.112:2	0/1:169,18:31:187:0.096:2	0/1:167,17:30:184:0.092:2	0/1:157,15:32:172:0.087:2	0/1:183,8:30:191:0.042:2	0/1:169,4:32:173:0.023:2
chr7	142459694	rs371037592	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,5:31:184:0.027:2	./.	./.	./.	0/1:190,6:32:196:0.031:2	./.
chr7	142459716	.	C	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:124,4:32:128:0.031:2	./.	./.	0/1:166,7:31:173:0.040:2	./.	0/1:184,6:29:190:0.032:2	./.	./.	0/1:169,6:32:175:0.034:2	./.	./.
chr7	142459722	rs199507985	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:152,5:30:157:0.032:2	./.	./.	./.	./.	0/1:174,5:32:179:0.028:2	./.	./.
chr7	142460313	rs6666	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:107,75:30:182:0.412:2	0/1:92,68:30:160:0.425:2	0/1:28,30:30:58:0.517:2	0/1:143,44:31:187:0.235:2	0/1:83,86:30:169:0.509:2	0/1:127,46:31:173:0.266:2	0/1:140,44:28:184:0.239:2	0/1:80,92:30:172:0.535:2	0/1:139,37:32:177:0.210:2	./.	./.
chr7	142460335	rs201550522	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:102,67:33:169:0.396:2	0/1:100,62:32:162:0.383:2	0/1:31,25:33:56:0.446:2	0/1:112,60:34:172:0.349:2	0/1:116,51:32:167:0.305:2	0/1:105,67:32:172:0.390:2	0/1:128,40:33:168:0.238:2	0/1:122,48:32:170:0.282:2	0/1:113,60:33:173:0.347:2	0/1:117,66:34:183:0.361:2	0/1:111,53:33:164:0.323:2
chr7	142460339	rs200973660	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:151,16:30:167:0.096:2	0/1:157,7:31:164:0.043:2	./.	0/1:158,7:29:165:0.042:2	./.	./.	./.	./.	0/1:161,9:26:170:0.053:2	./.	./.
chr7	142460369	rs201719096	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:106,19:32:125:0.152:2	0/1:108,31:31:139:0.223:2	0/1:41,12:32:53:0.226:2	0/1:124,37:31:161:0.230:2	0/1:131,34:31:165:0.206:2	0/1:109,51:30:160:0.319:2	0/1:139,30:32:169:0.178:2	0/1:127,38:31:166:0.230:2	0/1:124,41:32:165:0.248:2	0/1:135,41:31:176:0.233:2	0/1:136,33:31:169:0.195:2
chr7	142460394	rs377124851	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:126,8:26:134:0.060:2	0/1:97,10:27:107:0.093:2	0/1:39,4:30:43:0.093:2	0/1:137,14:27:151:0.093:2	0/1:147,10:28:157:0.064:2	0/1:136,19:26:155:0.123:2	0/1:157,11:26:168:0.065:2	0/1:140,12:29:152:0.079:2	0/1:144,18:27:162:0.111:2	0/1:158,18:28:176:0.102:2	0/1:145,16:23:161:0.099:2
chr7	142460744	rs150930992	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,13:30:157:0.083:2	./.	0/1:137,16:31:153:0.105:2	0/1:151,8:30:159:0.050:2	./.	0/1:126,12:33:138:0.087:2	0/1:126,19:31:145:0.131:2	0/1:128,21:33:151:0.141:2
chr7	142460752	rs140793689	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:122,4:32:126:0.032:2	./.	./.	0/1:143,13:31:156:0.083:2	./.	0/1:134,14:31:148:0.095:2	0/1:145,7:30:152:0.046:2	./.	0/1:128,12:33:140:0.086:2	0/1:127,16:32:143:0.112:2	0/1:120,21:33:141:0.149:2
chr7	142460764	rs200902389	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:147,10:31:157:0.064:2	./.	0/1:140,7:31:147:0.048:2	0/1:136,7:29:143:0.049:2	./.	./.	0/1:134,11:29:145:0.076:2	0/1:122,9:32:131:0.069:2
chr7	142460865	rs6667	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,67:33:83:0.807:2	0/1:7,40:32:47:0.851:2	0/1:0,18:32:18:1.00:2	0/1:67,72:32:139:0.518:2	0/1:1,121:32:122:0.992:2	0/1:45,80:32:125:0.640:2	0/1:57,82:32:139:0.590:2	0/1:4,154:32:158:0.975:2	0/1:55,70:34:125:0.560:2	./.	./.
chr7	142561377	rs766323	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,17:32:23:0.739:2	./.	./.	./.	./.	./.	./.	./.
chr7	142561786	rs56300555	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,90:29:181:0.497:2	./.	./.	./.	./.	./.
chr7	142565743	rs8177158	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,45:30:95:0.474:2	./.
chr7	142569556	rs4987683	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,19:33:52:0.365:2	./.
chr7	142569596	rs4987682	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,63:29:63:1.00:2	./.
chr7	142570142	rs4987679	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,34:32:34:1.00:2	./.
chr7	142572304	rs4987704	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,26:31:44:0.591:2	0/1:13,11:31:24:0.458:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	142572649	rs4987668	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,42:32:42:1.00:2	./.
chr7	142572908	rs4987667	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,59:29:59:1.00:2	./.
chr7	142573263	rs4987665	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,6:30:6:1.00:2	./.
chr7	142574326	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:31:101:0.040:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	142574913	rs4987657	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,58:28:58:1.00:2	./.
chr7	142574922	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:35:104:0.038:2	./.	./.	./.
chr7	142622714	rs4252435	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,5:30:159:0.032:2	./.	./.	0/1:2,110:31:112:0.982:2	./.
chr7	142625249	rs4252418	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,109:30:109:1.00:2	./.
chr7	142625258	rs4252417	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,44:31:116:0.379:2	./.
chr7	142625882	rs4252412	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,177:32:178:0.994:2	./.
chr7	142625933	rs4252411	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,79:31:183:0.432:2	./.
chr7	142626549	rs4236480	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:34,19:30:53:0.358:2	0/1:15,22:30:37:0.595:2	./.	./.	./.	./.	./.	./.	./.	0/1:0,63:31:63:1.00:2	./.
chr7	142626656	rs4252407	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,48:31:117:0.410:2	./.
chr7	142630534	rs4252372	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,16:30:30:0.533:2	./.
chr7	142636541	rs28578436	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,89:32:89:1.00:2	./.
chr7	142636704	rs11977017	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,16:27:16:1.00:2	./.
chr7	142640596	rs8176036	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,23:32:46:0.500:2	./.
chr7	142655008	rs8176058	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,53:30:119:0.445:2	./.	./.	./.	./.	0/1:67,53:32:120:0.442:2	./.	./.
chr7	142724062	rs9885986	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:32:13:0.308:2	./.	./.	0/1:51,23:30:74:0.311:2	0/1:29,17:32:46:0.370:2	./.	./.	./.	0/1:38,41:32:79:0.519:2
chr7	142749737	rs17164103	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,15:31:30:0.500:2	./.	./.	0/1:102,78:31:180:0.433:2	0/1:102,77:31:179:0.430:2	./.	./.	./.	0/1:88,74:31:163:0.457:2
chr7	142749919	rs28563993	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,46:31:109:0.422:2	./.	./.	./.	./.	0/1:72,69:32:142:0.489:2	0/1:57,48:32:105:0.457:2	./.
chr7	142749953	rs11975892	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,17:30:27:0.630:2	0/1:97,70:30:167:0.419:2	./.	0/1:102,94:30:196:0.480:2	0/1:107,87:31:194:0.448:2	./.	0/1:101,93:31:194:0.479:2	0/1:98,86:31:184:0.467:2	0/1:123,64:31:187:0.342:2
chr7	142750147	rs10245778	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:31:18:0.500:2	./.	./.	0/1:87,70:31:157:0.446:2	0/1:99,79:32:178:0.444:2	0/1:189,7:30:196:0.036:2	./.	./.	0/1:83,68:32:151:0.450:2
chr7	142836203	rs73170678	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,49:30:94:0.521:2	./.	./.	./.	0/1:70,62:32:132:0.470:2
chr7	142836720	rs147384445	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,22:31:43:0.512:2	0/1:9,8:30:17:0.471:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	142881419	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,12:15:105:0.114:2
chr7	142919731	rs10260248	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:28:12:0.667:2	./.	./.	0/1:40,20:29:60:0.333:2	./.	./.	./.	./.	0/1:47,39:33:86:0.453:2
chr7	142960690	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,7:22:60:0.117:2	./.	./.	./.	./.	./.	./.	./.
chr7	142983668	rs182806725	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,30:31:65:0.484:2	./.	./.	./.
chr7	143016928	rs6962852	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,55:32:55:1.00:2	0/1:42,42:32:84:0.500:2	0/1:43,32:32:75:0.427:2	0/1:36,40:33:76:0.526:2	0/1:60,32:32:92:0.348:2	./.	0/1:27,18:33:45:0.400:2	./.
chr7	143017807	rs10282312	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:33:37:1.00:2	0/1:0,41:33:41:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,43:33:43:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,47:34:47:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,62:33:62:1.00:2
chr7	143020467	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:32:111:0.036:2
chr7	143020649	rs2272256	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,13:31:28:0.464:2	0/1:103,89:31:193:0.464:2	0/1:121,75:32:196:0.383:2	./.	./.	0/1:109,82:32:191:0.429:2	0/1:189,4:34:193:0.021:2	0/1:112,76:32:188:0.404:2	./.
chr7	143020944	rs41276051	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:27:5:1.00:2	0/1:37,45:33:84:0.549:2	0/1:53,61:32:114:0.535:2	./.	./.	0/1:71,67:31:138:0.486:2	./.	0/1:24,38:32:62:0.613:2	./.
chr7	143029503	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,9:17:38:0.237:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	143029874	rs41276054	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,83:33:160:0.519:2	./.	./.
chr7	143036337	rs2272252	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:29:11:1.00:2	0/1:49,40:32:89:0.449:2	0/1:45,27:30:72:0.375:2	0/1:56,37:31:93:0.398:2	0/1:43,31:31:74:0.419:2	./.	0/1:1,87:32:88:0.989:2	0/1:0,81:31:81:1.00:2	0/1:57,24:32:81:0.296:2
chr7	143042837	rs2272251	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,24:30:24:1.00:2	0/1:0,14:31:14:1.00:2	./.	0/1:24,15:30:39:0.385:2	./.	0/1:20,27:28:47:0.574:2	0/1:42,36:29:78:0.462:2	0/1:0,48:30:48:1.00:2	./.	./.	0/1:24,11:29:37:0.314:2
chr7	143043240	rs13438232	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:32:6:1.00:2	0/1:50,41:32:91:0.451:2	0/1:55,24:31:79:0.304:2	0/1:46,54:30:100:0.540:2	0/1:68,30:32:98:0.306:2	./.	0/1:0,75:33:75:1.00:2	0/1:0,54:32:54:1.00:2	0/1:54,53:32:107:0.495:2
chr7	143043304	rs78085922	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,34:30:55:0.618:2	./.	./.
chr7	143053723	rs17854363	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,58:31:117:0.496:2	./.	0/1:37,46:30:83:0.554:2	./.	./.
chr7	143056811	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,4:30:59:0.068:2	./.	./.	./.	./.	./.	./.
chr7	143078793	rs188643297	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,5:25:11:0.455:2
chr7	143086010	rs73154206	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,17:32:35:0.486:2	./.	./.
chr7	143088823	rs1804527	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:28:45:1.00:2	0/1:0,19:28:19:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,49:29:49:1.00:2	0/1:1,90:29:91:0.989:2	0/1:0,63:28:63:1.00:2	0/1:0,93:29:93:1.00:2	0/1:0,76:28:76:1.00:2	0/1:0,44:29:44:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,34:29:34:1.00:2
chr7	143088867	rs6967117	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:31:49:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,98:31:98:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,32:32:32:1.00:2
chr7	143093538	rs10952549	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:33:28:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,2:34:2:1.00:2	0/1:25,29:32:54:0.537:2	0/1:0,34:32:34:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,36:33:36:1.00:2	0/1:0,32:32:32:1.00:2	0/1:28,16:31:44:0.364:2
chr7	143096776	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,4:33:108:0.037:2	./.	./.	./.	./.	./.	./.	./.
chr7	143097100	rs4725617	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:29:53:1.00:2	0/1:0,25:29:25:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,89:31:89:1.00:2	0/1:66,44:30:110:0.400:2	0/1:33,38:30:71:0.535:2	0/1:0,103:28:103:1.00:2	0/1:0,115:30:115:1.00:2	0/1:0,87:30:87:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,67:29:67:1.00:2
chr7	143098675	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:31:90:0.044:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	143140675	rs61750008	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,85:32:191:0.445:2	./.	./.	./.
chr7	143141475	rs4595035	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,15:33:15:1.00:2	0/1:0,12:30:12:1.00:2	./.	0/1:0,18:32:18:1.00:2	./.	0/1:13,11:32:24:0.458:2	0/1:0,11:30:11:1.00:2	0/1:10,5:32:15:0.333:2	0/1:0,29:33:29:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,24:31:24:1.00:2
chr7	143175086	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,11:19:126:0.088:2	0/1:123,10:17:133:0.075:2	0/1:144,12:15:156:0.077:2	./.	./.	./.
chr7	143175154	rs1404635	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,102:32:104:0.981:2	0/1:2,67:32:69:0.971:2	./.	0/1:77,82:32:159:0.516:2	0/1:93,91:32:184:0.495:2	0/1:1,160:31:162:0.994:2	0/1:94,61:32:155:0.394:2	./.	0/1:62,89:33:151:0.589:2	0/1:0,129:32:129:1.00:2	0/1:78,69:32:147:0.469:2
chr7	143175331	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,4:31:95:0.042:2	./.	./.	./.	./.	./.	./.
chr7	143175345	rs10278721	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,72:31:72:1.00:2	0/1:1,30:31:31:0.968:2	./.	0/1:35,25:30:60:0.417:2	0/1:33,55:30:88:0.625:2	0/1:0,75:31:75:1.00:2	0/1:36,42:31:78:0.538:2	./.	0/1:36,31:31:67:0.463:2	0/1:2,78:31:80:0.975:2	0/1:43,40:32:83:0.482:2
chr7	143175884	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,6:31:136:0.044:2	./.	./.	./.	./.	./.
chr7	143269032	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,17:31:156:0.109:2	./.	./.	./.	./.	./.	./.	./.	0/1:181,11:30:192:0.057:2
chr7	143269373	rs201542928	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:71,10:31:81:0.123:2	./.	./.	0/1:52,19:32:71:0.268:2	0/1:91,8:29:99:0.081:2	0/1:62,9:30:72:0.127:2	0/1:29,35:32:64:0.547:2	0/1:49,14:32:63:0.222:2	0/1:33,17:32:50:0.340:2	0/1:57,10:32:67:0.149:2	0/1:91,13:31:104:0.125:2
chr7	143269773	rs199661762	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:169,25:32:195:0.129:2	0/1:126,26:32:152:0.171:2	0/1:30,4:33:34:0.118:2	0/1:180,17:31:197:0.086:2	./.	./.	0/1:128,68:32:196:0.347:2	0/1:173,26:32:199:0.131:2	0/1:121,74:32:195:0.379:2	0/1:166,30:32:196:0.153:2	0/1:164,28:31:192:0.146:2
chr7	143269884	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,5:31:73:0.068:2	./.	./.	./.
chr7	143269952	rs201010309	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:29,11:30:40:0.275:2	0/1:26,5:32:31:0.161:2	./.	0/1:32,3:32:35:0.086:2	./.	0/1:25,9:31:34:0.265:2	./.	./.	./.	0/1:31,13:32:44:0.295:2	0/1:52,7:32:59:0.119:2
chr7	143270001	rs201104924	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:45,9:31:54:0.167:2	0/1:34,5:30:39:0.128:2	./.	0/1:46,7:29:54:0.132:2	./.	./.	0/1:51,10:29:61:0.164:2	./.	./.	./.	0/1:82,9:31:91:0.099:2
chr7	143270102	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,10:32:158:0.063:2	./.	./.	./.	./.	0/1:193,5:35:198:0.025:2	./.	./.
chr7	143270163	rs201837429	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:166,6:34:172:0.035:2	./.	./.	./.	0/1:32,4:30:36:0.111:2	./.	0/1:186,10:32:196:0.051:2	./.	./.	./.	./.
chr7	143270172	rs72611576	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,142:32:162:0.877:2	0/1:10,94:32:104:0.904:2	0/1:19,29:32:48:0.604:2	0/1:18,135:33:153:0.882:2	0/1:24,5:33:29:0.172:2	0/1:25,7:33:32:0.219:2	0/1:45,143:32:188:0.761:2	0/1:22,165:32:187:0.882:2	0/1:81,113:34:194:0.582:2	0/1:14,156:33:171:0.918:2	0/1:97,92:33:189:0.487:2
chr7	143270465	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:33:192:0.021:2	./.	./.	./.
chr7	143270469	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,44:32:195:0.227:2
chr7	143270470	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:137,46:31:183:0.251:2	0/1:157,35:32:192:0.182:2	0/1:160,35:31:195:0.179:2	./.	0/1:107,79:32:186:0.425:2	./.	./.	./.
chr7	143270749	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,43:32:194:0.222:2
chr7	143270768	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:163,34:31:197:0.173:2	./.	./.	./.	./.	./.	./.	./.
chr7	143270779	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:164,32:31:197:0.163:2	./.	./.	./.	./.	./.	./.	./.
chr7	143270825	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:155,5:33:160:0.031:2	./.	./.	./.	0/1:134,19:32:153:0.124:2	0/1:131,5:33:136:0.037:2	0/1:127,4:32:131:0.031:2	0/1:125,4:31:129:0.031:2	./.	0/1:127,15:31:142:0.106:2	0/1:173,11:31:184:0.060:2
chr7	143270910	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,14:32:98:0.143:2	./.	0/1:113,23:32:136:0.169:2
chr7	143270987	rs201676361	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,73:33:99:0.737:2	0/1:7,61:32:68:0.897:2	./.	0/1:62,57:32:119:0.479:2	0/1:87,16:32:103:0.155:2	0/1:132,17:32:149:0.114:2	0/1:50,50:33:100:0.500:2	0/1:154,22:32:176:0.125:2	0/1:80,38:33:118:0.322:2	0/1:57,56:32:113:0.496:2	0/1:97,53:32:150:0.353:2
chr7	143271128	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:137,27:32:164:0.165:2	0/1:165,27:33:192:0.141:2	./.	0/1:178,19:33:197:0.096:2	0/1:167,30:34:197:0.152:2	./.	0/1:149,42:33:191:0.220:2
chr7	143271178	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:73,4:29:77:0.052:2	0/1:170,22:30:192:0.115:2	./.	0/1:178,16:31:194:0.082:2	0/1:189,5:32:195:0.026:2	0/1:174,18:32:193:0.094:2	./.	./.	0/1:162,19:30:181:0.105:2
chr7	143271203	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:173,22:31:195:0.113:2	./.	./.	0/1:174,5:32:179:0.028:2	0/1:191,6:31:197:0.030:2	./.	0/1:191,5:33:196:0.026:2	./.
chr7	143271208	rs199982689	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,87:31:188:0.463:2	0/1:107,77:31:184:0.418:2	0/1:57,35:30:92:0.380:2	0/1:104,89:30:193:0.461:2	0/1:89,95:31:184:0.516:2	0/1:65,123:30:188:0.654:2	0/1:163,13:28:176:0.074:2	0/1:140,59:30:199:0.296:2	0/1:157,37:32:194:0.191:2	0/1:148,47:30:196:0.241:2	0/1:77,111:30:188:0.590:2
chr7	143271236	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:158,5:30:163:0.031:2	./.	./.	0/1:194,5:32:199:0.025:2	./.	0/1:190,5:31:195:0.026:2	./.
chr7	143400090	rs200968167	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,24:32:142:0.169:2	./.	0/1:112,41:31:153:0.268:2
chr7	143400205	rs201651026	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,3:32:14:0.214:2	./.	./.	./.	./.	./.	0/1:107,19:32:126:0.151:2	./.	0/1:97,25:31:122:0.205:2
chr7	143400301	rs80035595	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:32:77:1.00:2	0/1:2,73:32:75:0.973:2	0/1:15,10:31:25:0.400:2	0/1:6,129:31:135:0.956:2	0/1:160,28:32:188:0.149:2	0/1:169,19:31:188:0.101:2	0/1:1,168:32:169:0.994:2	0/1:1,165:32:166:0.994:2	0/1:106,84:31:190:0.442:2	0/1:123,65:32:188:0.346:2	0/1:109,76:32:186:0.411:2
chr7	143416945	rs143124178	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:71,65:32:136:0.478:2	0/1:33,32:32:65:0.492:2	./.	0/1:71,82:32:153:0.536:2	0/1:72,73:31:145:0.503:2	0/1:98,64:32:162:0.395:2	0/1:66,89:32:155:0.574:2	0/1:65,83:33:148:0.561:2	0/1:81,37:33:118:0.314:2	0/1:50,55:33:105:0.524:2	0/1:81,39:32:120:0.325:2
chr7	143416983	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,25:30:123:0.203:2	./.	./.	./.	./.	./.	./.	./.
chr7	143417083	rs144677924	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,68:31:80:0.850:2	0/1:11,36:30:47:0.766:2	./.	0/1:18,104:32:122:0.852:2	0/1:107,82:31:189:0.434:2	0/1:101,92:31:193:0.477:2	0/1:20,103:31:123:0.837:2	0/1:17,118:31:135:0.874:2	0/1:69,42:33:111:0.378:2	0/1:46,76:31:122:0.623:2	0/1:65,33:31:98:0.337:2
chr7	143417322	rs138258914	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,43:30:67:0.652:2	0/1:12,16:31:28:0.571:2	./.	0/1:21,33:29:54:0.611:2	0/1:60,43:29:103:0.417:2	0/1:53,32:30:85:0.376:2	0/1:25,37:29:62:0.597:2	0/1:34,29:30:63:0.460:2	0/1:42,23:31:65:0.354:2	0/1:22,26:30:48:0.542:2	0/1:33,12:31:45:0.267:2
chr7	143417402	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:37,16:30:53:0.302:2	0/1:18,11:30:29:0.379:2	./.	./.	./.	./.	0/1:52,8:29:60:0.133:2	./.	./.	./.	0/1:38,15:30:53:0.283:2
chr7	143417588	rs368149690	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:23,16:33:39:0.410:2	0/1:12,8:33:20:0.400:2	./.	0/1:23,13:33:36:0.361:2	./.	./.	0/1:17,13:33:30:0.433:2	0/1:29,24:31:53:0.453:2	0/1:40,5:29:45:0.111:2	0/1:32,4:31:36:0.111:2	0/1:24,3:33:27:0.111:2
chr7	143417625	rs370129390	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:29:28:1.00:2	0/1:0,13:28:13:1.00:2	0/1:5,5:30:10:0.500:2	0/1:0,31:30:31:1.00:2	0/1:35,20:29:55:0.364:2	0/1:21,9:29:30:0.300:2	0/1:0,24:28:24:1.00:2	0/1:0,39:28:39:1.00:2	0/1:21,9:30:30:0.300:2	0/1:7,23:29:30:0.767:2	0/1:12,8:28:20:0.400:2
chr7	143418459	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,42:29:194:0.216:2	./.	0/1:140,58:30:198:0.293:2	./.	./.
chr7	143419870	rs146162140	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,45:28:108:0.417:2	0/1:32,28:30:60:0.467:2	0/1:10,4:27:14:0.286:2	0/1:66,84:30:150:0.560:2	./.	./.	0/1:77,110:30:187:0.588:2	0/1:99,79:31:178:0.444:2	0/1:142,27:30:169:0.160:2	0/1:120,23:30:143:0.161:2	0/1:115,20:29:135:0.148:2
chr7	143419888	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:95,15:33:110:0.136:2	0/1:48,7:32:55:0.127:2	./.	./.	./.	./.	./.	./.	./.	0/1:106,18:30:124:0.145:2	./.
chr7	143420352	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,6:31:42:0.143:2
chr7	143420482	.	G	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,8:33:32:0.250:2	0/1:14,5:32:19:0.263:2	./.	0/1:13,24:32:37:0.649:2	0/1:35,25:31:60:0.417:2	0/1:49,9:28:58:0.155:2	0/1:26,9:29:35:0.257:2	0/1:23,27:32:50:0.540:2	0/1:29,6:29:35:0.171:2	0/1:21,15:33:36:0.417:2	./.
chr7	143421540	.	T	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant5-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:119,4:32:123:0.033:2	./.	./.	./.	./.	0/1:187,5:31:192:0.026:2	./.	./.	./.	0/1:185,8:31:193:0.041:2
chr7	143421566	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:181,9:28:190:0.047:2	./.	./.	./.	./.	./.	0/1:189,5:30:195:0.026:2	./.
chr7	143424522	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,70:32:157:0.446:2	./.	./.	./.	./.
chr7	143452454	rs201525686	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:102,79:31:181:0.436:2	0/1:92,92:31:185:0.500:2	0/1:58,31:30:89:0.348:2	0/1:111,80:30:191:0.419:2	0/1:82,105:31:187:0.561:2	0/1:77,119:30:196:0.607:2	./.	0/1:135,64:31:199:0.322:2	0/1:152,46:30:198:0.232:2	0/1:146,47:31:193:0.244:2	0/1:92,90:31:182:0.495:2
chr7	143452459	rs201815041	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:188,4:32:192:0.021:2	./.	0/1:179,13:34:192:0.068:2	0/1:186,6:32:192:0.031:2	./.	./.	0/1:193,6:32:199:0.030:2	./.	./.	./.
chr7	143452484	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:75,10:30:85:0.118:2	0/1:174,18:31:192:0.094:2	0/1:151,8:29:159:0.050:2	0/1:183,13:28:196:0.066:2	./.	0/1:162,27:31:190:0.143:2	./.	./.	0/1:175,12:31:187:0.064:2
chr7	143452534	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:138,10:31:149:0.068:2	0/1:124,22:33:146:0.151:2	./.	0/1:153,10:31:163:0.061:2	0/1:132,16:34:148:0.108:2	./.	0/1:142,28:32:171:0.165:2
chr7	143452675	.	A	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,114:33:127:0.898:2	0/1:13,52:31:65:0.800:2	./.	0/1:59,69:33:128:0.539:2	0/1:90,36:32:126:0.286:2	0/1:158,21:32:179:0.117:2	0/1:57,56:32:113:0.496:2	0/1:141,17:32:158:0.108:2	0/1:82,50:33:132:0.379:2	0/1:71,63:33:134:0.470:2	0/1:100,44:32:144:0.306:2
chr7	143452752	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,32:32:113:0.283:2	./.	0/1:139,30:32:169:0.178:2
chr7	143452837	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:189,5:32:195:0.026:2	0/1:117,7:31:124:0.056:2	./.	./.	0/1:151,17:31:169:0.101:2	0/1:171,4:31:175:0.023:2	0/1:129,6:30:136:0.044:2	./.	./.	./.	0/1:171,17:31:189:0.090:2
chr7	143452883	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:151,46:31:197:0.234:2	./.	./.	./.	./.	./.	./.	./.
chr7	143452894	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:147,51:31:198:0.258:2	./.	./.	./.	./.	./.	./.	./.
chr7	143452913	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,31:32:196:0.158:2
chr7	143452939	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,4:32:108:0.037:2	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2
chr7	143452998	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,4:32:111:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	143453010	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,4:31:99:0.040:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	143453192	rs200365386	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,46:31:185:0.249:2	0/1:166,28:31:194:0.144:2	0/1:159,34:31:193:0.176:2	./.	0/1:94,80:32:174:0.460:2	./.	./.	./.
chr7	143453193	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,44:33:191:0.230:2
chr7	143453197	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:191,5:31:196:0.026:2	./.	./.	./.	./.	./.	0/1:189,9:29:198:0.045:2
chr7	143453231	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:148,5:28:153:0.033:2	./.	./.	./.	./.	./.	./.
chr7	143453490	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:35:164:0.024:2	./.	./.	./.	./.
chr7	143453555	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,8:31:87:0.092:2	./.	./.	./.	./.
chr7	143453661	rs200907775	T	G,A	.	PASS	AC=5,2;AF=0.238,0.095;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0/1:31:78:0.224:2	0/1:32:45:0.349:2	./.	./.	0/1:32:80:0.163:2	0/1:32:92:0.250:2	0/2:30:35:0.143:2	./.	0/2:32:76:0.053:2	0/1:32:39:0.256:2	./.
chr7	143453710	rs201784201	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,8:32:51:0.157:2	0/1:27,11:31:38:0.289:2	./.	0/1:53,4:31:57:0.070:2	0/1:56,8:31:64:0.125:2	0/1:57,13:29:70:0.186:2	./.	./.	./.	./.	./.
chr7	143453778	rs199962163	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,12:32:71:0.169:2	./.	./.	./.
chr7	143453889	.	G	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:169,25:31:194:0.129:2	0/1:140,26:32:166:0.157:2	0/1:31,3:32:34:0.088:2	0/1:182,6:31:188:0.032:2	./.	./.	0/1:107,62:32:169:0.367:2	0/1:172,13:33:185:0.070:2	0/1:114,68:33:182:0.374:2	0/1:137,27:33:164:0.165:2	0/1:161,14:32:175:0.080:2
chr7	143454289	.	C	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:91,4:31:95:0.042:2	0/1:55,8:32:63:0.127:2	./.	0/1:42,11:33:53:0.208:2	0/1:91,11:32:102:0.108:2	0/1:59,7:31:66:0.106:2	0/1:45,18:31:63:0.286:2	0/1:56,10:32:66:0.152:2	0/1:42,11:33:54:0.208:2	0/1:44,5:33:49:0.102:2	0/1:77,14:32:92:0.154:2
chr7	143454539	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,6:33:199:0.030:2	./.	./.
chr7	143454630	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:155,10:31:165:0.061:2	./.	./.	./.	./.	./.	./.	./.	0/1:176,8:31:184:0.043:2
chr7	143554419	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,21:31:126:0.167:2	./.	./.	./.	./.	./.	./.
chr7	143556111	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:150,28:31:179:0.157:2	0/1:149,30:31:179:0.168:2	./.	./.	./.	./.	./.
chr7	143558378	rs201294554	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,15:30:59:0.254:2	./.	0/1:111,70:29:182:0.387:2	0/1:112,70:30:183:0.385:2	./.	./.	0/1:151,40:30:191:0.209:2	0/1:156,36:30:192:0.188:2	0/1:134,53:29:187:0.283:2
chr7	143560565	rs200302861	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,5:31:33:0.152:2	./.	./.	0/1:16,3:32:19:0.158:2	0/1:11,10:30:21:0.476:2	0/1:20,9:30:29:0.310:2	./.	./.
chr7	143560609	rs369876126	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	./.
chr7	143560734	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,3:30:19:0.158:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	143573397	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:33:72:0.056:2
chr7	143632618	rs2240359	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:29:7:0.714:2	./.	./.	./.	0/1:2,80:30:82:0.976:2	./.	0/1:5,86:31:91:0.945:2	./.	./.
chr7	143632833	rs13229174	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,13:30:36:0.361:2	./.	./.	./.	0/1:7,169:30:176:0.960:2	./.	0/1:2,192:30:194:0.990:2	./.	./.
chr7	143633157	rs13235235	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,9:32:11:0.818:2	./.	./.	./.	0/1:3,112:33:115:0.974:2	./.	0/1:0,135:33:135:1.00:2	./.	./.
chr7	143657708	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:32:145:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	143657722	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:30:128:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	143657801	rs2072166	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,11:31:16:0.688:2	0/1:173,4:33:177:0.023:2	./.	./.	0/1:4,126:29:131:0.969:2	./.	0/1:0,175:31:175:1.00:2	0/1:141,4:32:145:0.028:2	./.
chr7	143701516	rs7787378	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,65:32:136:0.478:2	./.	./.	0/1:106,70:32:176:0.398:2	./.	0/1:61,70:33:131:0.534:2	./.	./.
chr7	143701562	rs374206359	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:132,4:33:136:0.029:2	./.	./.	./.	./.	./.	./.
chr7	143701884	rs728275	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,17:32:17:1.00:2	0/1:60,60:32:120:0.500:2	0/1:54,51:31:105:0.486:2	0/1:67,51:31:118:0.432:2	0/1:1,95:32:96:0.990:2	0/1:80,53:32:133:0.398:2	0/1:1,106:33:107:0.991:2	./.	0/1:56,62:32:118:0.525:2
chr7	143747870	rs2961144	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,8:32:26:0.308:2	./.	./.	./.	0/1:6,183:33:189:0.968:2	./.	0/1:1,180:33:181:0.994:2	0/1:77,82:33:159:0.516:2	0/1:89,77:32:166:0.464:2
chr7	143748098	rs6464573	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,97:31:99:0.980:2	./.	0/1:2,108:32:110:0.982:2	0/1:83,52:31:135:0.385:2	0/1:47,61:31:108:0.565:2
chr7	143748170	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,4:31:77:0.052:2	./.	./.	./.	./.	./.	./.
chr7	143748257	rs6464574	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:30:9:0.333:2	./.	./.	./.	0/1:0,97:31:97:1.00:2	./.	0/1:2,86:31:88:0.977:2	0/1:41,49:31:90:0.544:2	0/1:42,40:31:83:0.488:2
chr7	143748364	rs4407791	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:32:5:1.00:2	0/1:21,30:33:51:0.588:2	0/1:29,20:32:49:0.408:2	0/1:30,29:32:59:0.492:2	0/1:0,52:32:52:1.00:2	0/1:28,33:32:61:0.541:2	0/1:0,52:33:52:1.00:2	0/1:18,29:33:47:0.617:2	0/1:0,62:33:62:1.00:2
chr7	143771408	rs59319753	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,3:35:10:0.300:2	0/1:74,38:32:112:0.339:2	0/1:57,36:32:93:0.387:2	0/1:76,61:32:137:0.445:2	./.	0/1:69,40:32:109:0.367:2	./.	./.	0/1:79,64:33:143:0.448:2
chr7	143771536	rs6951485	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:31:10:1.00:2	0/1:55,67:31:122:0.549:2	0/1:59,71:31:130:0.546:2	0/1:53,74:31:127:0.583:2	0/1:1,129:31:130:0.992:2	0/1:70,61:30:131:0.466:2	0/1:0,125:32:125:1.00:2	0/1:58,52:31:110:0.473:2	0/1:0,112:31:113:1.00:2
chr7	143771557	rs61731397	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,63:29:109:0.578:2	./.	./.	./.	./.	./.	./.	./.
chr7	143771878	rs374373324	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:131,4:31:135:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr7	143771937	rs2961135	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,12:29:12:1.00:2	0/1:68,64:31:132:0.485:2	0/1:43,32:30:75:0.427:2	0/1:59,61:31:120:0.508:2	0/1:0,98:31:98:1.00:2	0/1:74,55:31:129:0.426:2	0/1:0,126:32:126:1.00:2	0/1:52,43:31:95:0.453:2	0/1:0,136:30:136:1.00:2
chr7	143792991	rs34947817	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,53:31:53:1.00:2	./.	0/1:0,63:32:63:1.00:2	0/1:40,30:31:70:0.429:2	./.
chr7	143806688	rs10230228	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,125:32:132:0.954:2	0/1:189,6:31:195:0.031:2	0/1:0,142:32:142:1.00:2	0/1:52,68:33:120:0.567:2	./.
chr7	143806712	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:33:190:0.021:2	./.	./.	./.
chr7	143806830	rs376133150	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.	./.
chr7	143807304	rs10252253	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,36:33:36:1.00:2	./.	0/1:0,44:34:44:1.00:2	0/1:16,25:32:41:0.610:2	./.
chr7	143807515	rs2961149	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,7:32:9:0.778:2	0/1:39,19:31:58:0.328:2	0/1:36,27:32:63:0.429:2	0/1:42,39:31:81:0.481:2	./.	0/1:48,39:32:87:0.448:2	./.	./.	0/1:1,66:32:68:0.985:2
chr7	143807518	rs2951315	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,7:32:9:0.778:2	0/1:37,19:32:56:0.339:2	0/1:36,27:31:63:0.429:2	0/1:44,38:32:82:0.463:2	./.	0/1:47,39:32:86:0.453:2	./.	./.	0/1:1,65:32:66:0.985:2
chr7	143826603	rs2961160	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,5:31:27:0.185:2	0/1:99,85:31:184:0.462:2	0/1:112,68:32:180:0.378:2	0/1:103,77:31:180:0.428:2	0/1:0,174:32:174:1.00:2	0/1:95,89:31:184:0.484:2	0/1:0,177:32:177:1.00:2	0/1:88,70:32:158:0.443:2	0/1:1,173:31:174:0.994:2
chr7	143826697	rs2961161	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,7:32:24:0.292:2	0/1:103,64:32:167:0.383:2	0/1:103,45:32:148:0.304:2	0/1:134,51:32:185:0.276:2	0/1:1,101:32:103:0.990:2	0/1:110,54:32:164:0.329:2	0/1:0,171:32:171:1.00:2	0/1:119,68:31:189:0.364:2	0/1:0,175:31:175:1.00:2
chr7	143826709	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:32:109:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	143826871	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:32:124:0.032:2	./.	./.	./.	./.	./.
chr7	143826975	rs371499311	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:31:141:0.028:2	./.	./.	./.
chr7	143880718	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:121,10:31:131:0.076:2	./.	./.	./.	./.	./.	./.	./.	0/1:170,17:32:187:0.091:2
chr7	143881059	rs201886132	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:70,5:32:75:0.067:2	0/1:52,8:32:60:0.133:2	./.	0/1:68,19:32:87:0.218:2	0/1:94,7:32:101:0.069:2	0/1:57,6:31:64:0.095:2	0/1:54,27:31:81:0.333:2	0/1:57,12:29:69:0.174:2	0/1:39,24:33:64:0.381:2	0/1:45,10:32:55:0.182:2	0/1:76,17:31:93:0.183:2
chr7	143881115	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr7	143881158	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:195,4:32:199:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr7	143881459	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:185,10:31:195:0.051:2	0/1:147,12:32:159:0.075:2	./.	0/1:181,16:30:197:0.081:2	./.	./.	0/1:131,63:32:194:0.325:2	0/1:185,13:32:198:0.066:2	0/1:149,48:33:197:0.244:2	0/1:166,27:32:194:0.140:2	0/1:182,14:30:196:0.071:2
chr7	143881570	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,7:31:50:0.140:2	./.	./.	./.
chr7	143881638	.	A	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,7:31:36:0.194:2	0/1:16,4:33:20:0.200:2	./.	0/1:30,7:30:37:0.189:2	0/1:57,4:31:61:0.066:2	0/1:40,4:31:44:0.091:2	./.	./.	./.	0/1:34,7:32:41:0.171:2	0/1:51,5:32:56:0.089:2
chr7	143881687	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,6:29:50:0.122:2	./.	./.	0/1:28,5:30:33:0.152:2	./.	./.	0/1:38,10:30:48:0.208:2	./.
chr7	143881776	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:33:163:0.025:2	./.	./.	./.
chr7	143881788	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,9:33:197:0.046:2	./.	./.	./.	./.	0/1:117,9:34:126:0.071:2	./.	./.
chr7	143881849	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:31:134:0.030:2	./.	./.	./.	./.
chr7	143882194	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,17:32:198:0.086:2	./.	./.
chr7	143882435	rs201672916	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:172,7:31:179:0.039:2	./.	./.	./.	./.	./.	./.
chr7	143882444	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,14:33:147:0.095:2	./.	./.
chr7	143882511	rs201839312	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:138,4:32:142:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr7	143882559	rs199840651	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:77,4:33:81:0.049:2	./.	0/1:94,4:32:98:0.041:2	0/1:42,17:31:59:0.288:2	0/1:68,5:33:73:0.068:2	0/1:59,10:33:69:0.145:2	0/1:84,5:31:89:0.056:2	./.	0/1:67,15:33:82:0.183:2	0/1:108,12:32:120:0.100:2
chr7	143882617	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,9:33:63:0.143:2	./.	./.
chr7	143882673	rs201010806	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,20:32:81:0.247:2	0/1:100,20:31:120:0.167:2	./.	./.	0/1:36,7:33:43:0.163:2	./.	0/1:61,21:32:82:0.256:2	./.
chr7	143882697	rs145692929	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,98:32:134:0.731:2	./.	0/1:65,59:32:124:0.476:2	./.	0/1:45,29:33:74:0.392:2	0/1:69,29:32:98:0.296:2	0/1:102,43:33:146:0.297:2
chr7	143882814	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.	0/1:187,8:32:195:0.041:2	0/1:194,4:34:198:0.020:2	./.	./.
chr7	143882864	rs200691220	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,8:32:81:0.099:2	./.	./.	0/1:164,30:32:194:0.155:2	0/1:155,39:32:195:0.201:2	0/1:194,6:31:200:0.030:2	0/1:142,52:33:194:0.268:2	0/1:178,15:32:193:0.078:2	./.
chr7	143882889	rs201820489	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:60,27:30:87:0.310:2	0/1:180,15:32:196:0.077:2	0/1:192,5:29:197:0.025:2	0/1:131,57:32:188:0.303:2	./.	0/1:162,32:32:194:0.165:2	./.	./.	0/1:157,36:32:193:0.187:2
chr7	143882894	rs199524941	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,7:31:196:0.036:2	./.	./.	./.
chr7	143882897	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:166,29:31:195:0.149:2	./.	./.	./.	./.	0/1:170,28:32:198:0.141:2	./.	./.
chr7	143882922	rs200196623	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:49,16:31:65:0.246:2	0/1:170,25:32:195:0.128:2	0/1:191,5:30:196:0.026:2	0/1:133,58:30:192:0.304:2	./.	0/1:150,47:31:197:0.239:2	./.	./.	0/1:156,33:30:189:0.175:2
chr7	143882941	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:164,30:33:194:0.155:2	./.	./.	./.	./.	0/1:163,17:34:180:0.094:2	./.	./.
chr7	143882963	rs199972390	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,11:32:166:0.066:2	0/1:166,5:33:171:0.029:2	./.	./.	./.	./.
chr7	143883079	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,5:30:40:0.125:2	./.	./.	./.
chr7	143883147	rs202139958	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:17,3:32:20:0.150:2	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	0/1:39,5:33:44:0.114:2
chr7	143884103	rs4726676	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:31:12:0.500:2	./.	0/1:46,18:30:64:0.281:2	0/1:39,34:30:73:0.466:2	./.	0/1:40,35:31:75:0.467:2	0/1:1,2:32:3:0.667:2	./.	0/1:48,38:30:86:0.442:2
chr7	143884106	rs1731348	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.	./.	0/1:54,7:31:61:0.115:2	./.	0/1:4,6:32:10:0.600:2	0/1:69,4:31:73:0.055:2	./.	./.	./.
chr7	143884122	rs2951313	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,6:30:73:0.082:2	./.	0/1:4,4:32:8:0.500:2	./.	./.	./.	./.
chr7	143884193	rs201754709	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:181,11:31:192:0.057:2	0/1:97,14:32:111:0.126:2	./.	0/1:173,12:31:185:0.065:2	./.	./.	./.	0/1:154,41:32:196:0.210:2	./.	0/1:159,12:32:171:0.070:2	./.
chr7	143884437	rs202220824	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:176,17:29:193:0.088:2	0/1:176,17:29:193:0.088:2	./.	./.	0/1:180,16:31:196:0.082:2	./.	0/1:154,44:30:198:0.222:2	./.	0/1:172,26:31:198:0.131:2	./.	0/1:173,16:30:189:0.085:2
chr7	143884953	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:59,5:30:64:0.078:2	0/1:24,11:31:35:0.314:2	./.	0/1:53,6:32:59:0.102:2	./.	./.	./.	./.	./.	./.	./.
chr7	143929147	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,28:32:192:0.146:2	./.	./.	./.	./.
chr7	143929313	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,40:30:189:0.213:2	0/1:181,16:30:197:0.081:2	./.	./.	0/1:121,68:30:189:0.360:2	0/1:153,39:31:192:0.203:2	0/1:163,29:30:192:0.151:2	0/1:160,28:30:189:0.149:2
chr7	143929434	rs202053225	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,99:32:173:0.572:2	0/1:87,95:32:182:0.522:2	0/1:21,36:31:57:0.632:2	0/1:94,95:32:189:0.503:2	0/1:79,118:32:197:0.599:2	0/1:96,92:32:188:0.489:2	0/1:1,191:32:192:0.995:2	0/1:101,88:32:189:0.466:2	0/1:1,179:33:180:0.994:2	0/1:41,149:32:190:0.784:2	0/1:83,113:32:196:0.577:2
chr7	143929467	rs199882027	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,104:31:186:0.559:2	0/1:82,86:31:168:0.512:2	0/1:18,32:31:50:0.640:2	0/1:133,57:31:192:0.300:2	0/1:108,86:30:194:0.443:2	0/1:107,77:30:184:0.418:2	0/1:0,174:30:174:1.00:2	0/1:173,21:31:194:0.108:2	0/1:47,138:31:185:0.746:2	0/1:62,129:31:191:0.675:2	0/1:110,71:31:181:0.392:2
chr7	143929496	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:157,30:32:187:0.160:2	0/1:151,23:32:174:0.132:2	0/1:26,21:32:47:0.447:2	0/1:166,19:31:186:0.103:2	./.	./.	0/1:171,28:32:199:0.141:2	0/1:171,22:32:193:0.114:2	./.	./.	0/1:175,16:32:191:0.084:2
chr7	143929652	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:32:9:0.333:2	./.	./.	./.	./.
chr7	143929717	rs200148853	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,30:32:117:0.256:2	0/1:57,20:32:77:0.260:2	0/1:21,6:32:27:0.222:2	0/1:114,46:32:160:0.288:2	0/1:118,70:31:188:0.372:2	0/1:124,30:32:154:0.195:2	0/1:2,96:32:98:0.980:2	0/1:119,33:32:152:0.217:2	0/1:1,51:32:52:0.981:2	0/1:72,62:31:134:0.463:2	0/1:121,47:31:168:0.280:2
chr7	143929720	rs201215638	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,27:30:112:0.245:2	0/1:54,20:29:75:0.270:2	0/1:19,6:29:26:0.240:2	0/1:115,47:29:162:0.290:2	0/1:117,69:29:187:0.371:2	0/1:124,30:30:154:0.195:2	0/1:2,94:30:96:0.979:2	0/1:119,32:29:151:0.212:2	0/1:1,49:29:50:0.980:2	0/1:63,61:30:124:0.492:2	0/1:108,49:29:159:0.312:2
chr7	143929772	rs202091077	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:67,40:29:107:0.374:2	0/1:60,16:30:76:0.211:2	./.	0/1:129,31:28:160:0.194:2	./.	./.	./.	./.	./.	./.	./.
chr7	143929810	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:31:136:0.030:2	./.	./.	./.
chr7	143929814	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:31:135:0.030:2	./.	./.	./.
chr7	143929930	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,6:31:184:0.033:2	./.	./.	./.	./.
chr7	143929932	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,6:30:179:0.034:2	./.	./.	./.	./.
chr7	143955954	rs201430433	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,32:31:198:0.162:2	./.
chr7	143956461	rs199974780	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:130,17:30:147:0.116:2	0/1:84,16:29:101:0.160:2	./.	0/1:149,22:30:171:0.129:2	./.	./.	0/1:168,25:29:193:0.130:2	./.	0/1:136,48:30:184:0.261:2	0/1:149,30:28:179:0.168:2	./.
chr7	143956465	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:146,33:30:179:0.184:2	./.	./.	./.	./.	./.	./.	./.
chr7	143956466	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,33:30:177:0.186:2	./.	./.	./.	./.	./.	./.	./.
chr7	143956599	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:78,20:32:98:0.204:2	0/1:50,6:29:56:0.107:2	./.	0/1:122,9:31:131:0.069:2	./.	./.	./.	./.	0/1:97,12:33:109:0.110:2	0/1:143,4:32:147:0.027:2	./.
chr7	143956620	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:32:140:0.029:2	./.
chr7	143964018	rs200446072	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:55,16:31:71:0.225:2	0/1:177,19:30:196:0.097:2	./.	0/1:159,38:31:197:0.193:2	./.	0/1:163,31:32:194:0.160:2	./.	./.	0/1:162,25:31:187:0.134:2
chr7	143964043	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:178,19:31:197:0.096:2	./.	./.	./.	./.	0/1:172,20:32:192:0.104:2	./.	./.
chr7	143964051	rs200781769	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:57,20:31:77:0.260:2	0/1:189,11:31:200:0.055:2	0/1:191,7:31:198:0.035:2	0/1:151,47:32:198:0.237:2	./.	0/1:167,32:32:199:0.161:2	./.	./.	0/1:159,33:33:192:0.172:2
chr7	143964076	rs202035285	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,9:33:69:0.130:2	./.	./.	0/1:150,50:32:200:0.250:2	0/1:145,47:32:192:0.245:2	./.	0/1:130,65:32:195:0.333:2	0/1:172,25:30:197:0.127:2	./.
chr7	143964126	rs200189416	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,5:32:134:0.037:2	./.	./.	./.	0/1:148,4:33:152:0.026:2	./.	./.
chr7	143964243	rs201489893	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,4:31:17:0.235:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	143964267	rs201960823	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,96:33:116:0.828:2	0/1:11,55:32:66:0.833:2	./.	0/1:77,52:33:129:0.403:2	0/1:98,26:31:124:0.210:2	0/1:148,24:33:172:0.140:2	0/1:50,41:31:91:0.451:2	0/1:120,19:32:139:0.137:2	0/1:86,49:33:135:0.363:2	0/1:70,65:32:135:0.481:2	0/1:127,42:33:169:0.249:2
chr7	143964323	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,11:32:98:0.112:2	./.	./.
chr7	143964344	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,5:32:94:0.053:2	./.	./.
chr7	143964381	rs200679159	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:121,12:32:133:0.090:2	0/1:54,9:29:63:0.143:2	0/1:7,3:29:10:0.300:2	0/1:123,11:33:134:0.082:2	0/1:53,24:31:77:0.312:2	./.	0/1:69,11:32:80:0.138:2	0/1:106,9:32:115:0.078:2	0/1:86,7:32:93:0.075:2	0/1:88,12:32:100:0.120:2	0/1:138,20:32:158:0.127:2
chr7	143964429	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,6:32:194:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr7	143964496	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,46:33:197:0.234:2	./.	./.
chr7	143964505	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:178,16:31:194:0.082:2	./.	./.	./.	./.	./.	./.
chr7	143964746	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,32:32:192:0.167:2	./.	./.
chr7	143965152	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:145,8:33:154:0.052:2	./.	./.	./.	./.	0/1:127,22:32:149:0.148:2	./.	./.
chr7	143965253	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:21,3:31:24:0.125:2	./.	./.	./.	./.	0/1:35,9:31:44:0.205:2	./.	0/1:36,5:31:41:0.122:2	./.	./.
chr7	143965302	.	T	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,5:32:38:0.132:2	0/1:12,3:33:15:0.200:2	./.	0/1:31,7:31:38:0.184:2	0/1:52,4:31:56:0.071:2	0/1:48,5:31:53:0.094:2	./.	./.	./.	0/1:25,4:31:29:0.138:2	./.
chr7	143965370	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:31:69:0.058:2	./.	./.	./.
chr7	143965481	rs200264999	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:170,19:32:189:0.101:2	0/1:146,8:32:154:0.052:2	0/1:31,3:32:34:0.088:2	0/1:175,11:30:186:0.059:2	./.	./.	0/1:100,61:32:161:0.379:2	0/1:171,11:32:182:0.060:2	0/1:111,64:33:175:0.366:2	0/1:153,22:33:175:0.126:2	0/1:166,7:32:173:0.040:2
chr7	143965881	.	C	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,9:33:61:0.148:2	0/1:37,9:31:46:0.196:2	0/1:6,5:32:11:0.455:2	0/1:51,11:32:62:0.177:2	0/1:98,7:31:105:0.067:2	0/1:56,4:31:60:0.067:2	0/1:45,23:32:68:0.338:2	0/1:49,10:31:60:0.169:2	0/1:61,18:32:79:0.228:2	0/1:58,10:32:68:0.147:2	0/1:70,19:33:90:0.213:2
chr7	143966222	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:174,16:32:190:0.084:2	./.	./.	./.	./.	./.	./.	./.	0/1:180,7:32:187:0.037:2
chr7	144015222	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,7:31:196:0.036:2	./.	./.	0/1:187,7:31:194:0.036:2
chr7	144015224	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,7:31:196:0.036:2	./.	./.	0/1:188,6:32:194:0.031:2
chr7	144015382	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:147,18:29:165:0.109:2	0/1:103,10:31:113:0.088:2	./.	0/1:167,25:25:192:0.130:2	./.	./.	./.	./.	./.	./.	./.
chr7	144015434	rs141871720	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,129:27:175:0.737:2	0/1:42,101:27:143:0.706:2	0/1:4,17:29:21:0.810:2	0/1:34,145:28:179:0.810:2	0/1:35,152:27:188:0.813:2	0/1:71,116:27:187:0.620:2	0/1:0,184:28:184:1.00:2	0/1:22,151:28:173:0.873:2	0/1:0,179:28:179:1.00:2	0/1:7,168:28:175:0.960:2	0/1:14,162:27:176:0.920:2
chr7	144015437	rs150229766	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,132:32:182:0.725:2	0/1:44,102:32:146:0.699:2	0/1:3,18:32:21:0.857:2	0/1:34,145:32:179:0.810:2	0/1:40,154:32:194:0.794:2	0/1:75,114:32:190:0.603:2	0/1:0,184:32:185:1.00:2	0/1:21,153:32:174:0.879:2	0/1:2,177:33:179:0.989:2	0/1:5,171:33:176:0.972:2	0/1:14,161:33:175:0.920:2
chr7	144015658	rs200043627	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:153,35:32:188:0.186:2	0/1:137,26:32:163:0.160:2	0/1:39,18:32:57:0.316:2	0/1:150,34:32:184:0.185:2	./.	./.	0/1:167,27:31:194:0.139:2	0/1:142,49:32:191:0.257:2	./.	./.	0/1:152,33:33:186:0.178:2
chr7	144015687	rs202096920	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:79,99:31:178:0.556:2	0/1:66,114:31:180:0.633:2	0/1:30,32:31:62:0.516:2	0/1:123,73:31:196:0.372:2	0/1:97,92:31:189:0.487:2	0/1:95,99:30:194:0.510:2	0/1:3,187:31:190:0.984:2	0/1:148,46:30:194:0.237:2	0/1:62,122:31:184:0.663:2	0/1:66,118:31:184:0.641:2	0/1:98,93:31:191:0.487:2
chr7	144015720	rs201568948	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,92:32:164:0.561:2	0/1:78,109:32:187:0.583:2	0/1:32,31:32:63:0.492:2	0/1:84,102:32:186:0.548:2	0/1:82,116:32:198:0.586:2	0/1:90,102:32:192:0.531:2	0/1:1,193:32:194:0.995:2	0/1:82,103:32:185:0.557:2	0/1:0,173:33:173:1.00:2	0/1:36,144:32:180:0.800:2	0/1:62,125:32:187:0.668:2
chr7	144015841	rs199515997	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:153,33:28:186:0.177:2	0/1:173,26:31:199:0.131:2	./.	./.	0/1:140,49:31:191:0.259:2	0/1:151,39:30:190:0.205:2	0/1:153,41:30:194:0.211:2	0/1:164,22:31:187:0.118:2
chr7	144016007	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,23:32:159:0.145:2	./.	./.	./.	./.
chr7	144060286	rs141058548	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:42,22:33:64:0.344:2	0/1:32,9:32:41:0.220:2	./.	0/1:83,17:32:100:0.170:2	./.	./.	./.	./.	./.	./.	./.
chr7	144060357	rs200710694	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,14:26:67:0.209:2	./.	./.	./.	./.	./.	./.
chr7	144060770	rs141931104	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,5:32:21:0.263:2	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.	0/1:4,4:31:9:0.500:2
chr7	144060802	rs145771593	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:122,72:31:194:0.371:2	0/1:129,66:31:195:0.338:2	0/1:51,13:31:64:0.203:2	0/1:141,50:31:192:0.262:2	0/1:170,23:30:193:0.119:2	./.	0/1:149,47:30:196:0.240:2	0/1:161,37:31:198:0.187:2	0/1:153,38:31:191:0.199:2	./.	0/1:170,27:31:197:0.137:2
chr7	144060877	rs200205335	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:43,27:31:70:0.386:2	0/1:165,27:32:192:0.141:2	0/1:134,14:31:148:0.095:2	0/1:148,38:30:186:0.204:2	./.	0/1:156,25:31:181:0.138:2	./.	0/1:175,20:32:195:0.103:2	0/1:123,30:32:153:0.196:2
chr7	144061119	rs200279177	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,21:31:42:0.500:2	./.	./.	./.	./.	./.
chr7	144061204	rs200716588	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:13,4:31:17:0.235:2	./.	0/1:20,3:32:23:0.130:2	./.	./.	./.	./.	./.	0/1:10,4:29:14:0.286:2	./.
chr7	144061222	rs201805873	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	0/1:0,2:29:3:1.00:2	./.	./.	./.	./.	0/1:1,6:32:7:0.857:2
chr7	144061486	rs201540510	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,34:32:182:0.187:2	./.	./.	./.	./.	./.
chr7	144061500	rs201664716	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:145,34:32:179:0.190:2	0/1:92,18:31:110:0.164:2	./.	0/1:150,36:31:186:0.194:2	./.	./.	./.	./.	./.	./.	./.
chr7	144061529	rs200679481	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,44:31:187:0.235:2	./.	./.	./.	./.	./.
chr7	144061607	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:157,24:31:182:0.133:2	0/1:166,23:31:189:0.122:2	./.	./.	./.	0/1:124,39:32:163:0.239:2	./.	./.
chr7	144062632	rs202036368	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:32:4:0.750:2	0/1:38,9:32:47:0.191:2	0/1:56,7:29:63:0.111:2	0/1:30,10:31:40:0.250:2	./.	0/1:37,18:32:55:0.327:2	./.	0/1:65,17:33:82:0.207:2	0/1:43,34:33:77:0.442:2
chr7	144062639	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,8:31:47:0.170:2	./.	./.	./.
chr7	144070338	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:26:10:0.333:2	./.	./.	./.	./.	./.
chr7	144096068	rs2525702	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,88:31:153:0.575:2	./.	./.	./.	./.	./.
chr7	144096570	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:32:82:0.049:2	./.	./.	./.
chr7	144098992	rs727714	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:33:48:1.00:2	0/1:0,44:33:44:1.00:2	0/1:5,6:32:11:0.545:2	0/1:45,33:32:78:0.423:2	0/1:18,19:31:37:0.514:2	0/1:34,34:32:68:0.500:2	./.	0/1:30,45:32:75:0.600:2	./.	0/1:25,30:33:55:0.545:2	./.
chr7	144107255	rs138463368	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,86:29:186:0.462:2	./.	./.	./.	./.	./.	./.
chr7	144107279	rs1208179	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,90:32:162:0.556:2	./.	./.	./.	./.	./.
chr7	147092861	rs34592169	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,56:30:131:0.427:2	./.	./.	./.	./.	0/1:45,48:31:93:0.516:2
chr7	147183121	rs200239604	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,8:15:62:0.131:2
chr7	147335947	rs201751804	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:32,4:31:36:0.111:2	0/1:28,5:22:33:0.152:2	./.	0/1:52,7:24:59:0.119:2	./.	./.	./.	./.	./.	./.	0/1:63,9:16:72:0.125:2
chr7	147674978	rs10240503	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,55:28:123:0.447:2	0/1:63,57:28:120:0.475:2	./.	./.	./.	./.	./.	./.
chr7	148080943	rs201219937	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,12:30:21:0.571:2	./.	./.	./.	./.	./.	./.
chr7	148106477	rs60451214	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,6:32:40:0.150:2	0/1:67,10:31:77:0.130:2	0/1:45,10:33:55:0.182:2	./.	0/1:65,9:29:74:0.122:2	0/1:61,4:34:65:0.062:2	./.
chr7	148106490	rs9648691	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:38,33:33:71:0.465:2	0/1:30,13:33:43:0.302:2	0/1:0,5:32:5:1.00:2	./.	0/1:28,18:32:46:0.391:2	0/1:54,31:32:85:0.365:2	0/1:39,34:32:73:0.466:2	./.	0/1:51,36:34:87:0.414:2	0/1:41,24:33:65:0.369:2	./.
chr7	148131742	rs2108673	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,21:32:54:0.389:2	./.	./.	./.	./.	0/1:0,59:33:59:1.00:2	0/1:19,20:33:39:0.513:2	./.
chr7	148143136	rs2530301	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:31:47:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,46:31:46:1.00:2	0/1:61,35:30:96:0.365:2	0/1:0,39:31:39:1.00:2	0/1:2,55:31:57:0.965:2	0/1:0,43:31:43:1.00:2	0/1:0,40:30:40:1.00:2	0/1:0,18:29:18:1.00:2
chr7	148288020	rs62624492	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,6:30:23:0.261:2	./.	0/1:16,12:32:28:0.429:2	./.	./.
chr7	148288135	rs111320068	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,37:32:76:0.487:2	./.	0/1:39,35:33:74:0.473:2	./.	./.
chr7	148511171	rs41277437	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,47:32:110:0.427:2	0/1:39,27:32:66:0.409:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	148525904	rs2302427	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,70:33:140:0.500:2	0/1:73,86:33:160:0.541:2	./.	./.	./.
chr7	148638572	rs2035216	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,83:32:83:1.00:2	0/1:0,49:32:49:1.00:2	0/1:7,6:31:13:0.462:2	0/1:69,42:31:111:0.378:2	./.	0/1:155,5:30:160:0.031:2	0/1:54,34:32:88:0.386:2	./.	0/1:76,62:33:138:0.449:2	0/1:0,91:31:91:1.00:2	0/1:68,72:32:140:0.514:2
chr7	148705345	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,7:29:84:0.083:2	./.	./.	./.	./.
chr7	148724945	rs6952916	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:34:6:0.500:2	0/1:41,38:31:79:0.481:2	0/1:26,27:31:53:0.509:2	0/1:36,35:32:71:0.493:2	0/1:36,29:32:65:0.446:2	0/1:43,43:32:86:0.500:2	0/1:37,27:33:64:0.422:2	./.	0/1:56,45:32:101:0.446:2
chr7	148769173	rs188243675	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,26:32:47:0.553:2	./.	./.	./.	./.
chr7	148801091	rs11525060	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,49:31:49:1.00:2	0/1:0,37:31:37:1.00:2	0/1:1,6:31:7:0.857:2	./.	0/1:0,67:30:67:1.00:2	0/1:45,35:30:80:0.438:2	./.	0/1:2,85:31:87:0.977:2	0/1:45,41:32:86:0.477:2	0/1:42,32:32:74:0.432:2	0/1:43,26:29:69:0.377:2
chr7	148801337	rs12704061	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,7:28:11:0.636:2	0/1:40,26:29:66:0.394:2	./.	./.	./.	./.	0/1:40,35:30:75:0.467:2	./.	./.
chr7	148801658	rs1137432	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,14:32:14:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,4:32:4:1.00:2	./.	0/1:0,12:30:12:1.00:2	0/1:23,16:31:39:0.410:2	./.	0/1:0,21:31:21:1.00:2	0/1:16,10:32:26:0.385:2	0/1:10,12:32:22:0.545:2	0/1:8,11:31:19:0.579:2
chr7	148823277	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,4:28:77:0.052:2	./.	./.	./.	./.	./.	./.
chr7	148851213	rs917124	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,44:32:44:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,14:30:14:1.00:2	./.	0/1:1,37:29:38:0.974:2	0/1:54,25:30:79:0.316:2	./.	0/1:0,88:31:88:1.00:2	0/1:0,67:32:67:1.00:2	0/1:29,43:31:72:0.597:2	0/1:41,37:31:78:0.474:2
chr7	148851273	rs3801979	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:33:6:0.500:2	./.	./.	./.	./.	./.	0/1:24,21:32:45:0.467:2	./.	./.
chr7	148873633	rs113060841	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	148904547	rs1202418	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,33:32:69:0.478:2
chr7	148936878	rs11548535	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,7:29:7:1.00:2	./.	./.	./.	0/1:3,13:29:16:0.813:2	./.	./.
chr7	148947279	rs11769362	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,43:32:91:0.473:2	./.	./.	./.	./.	./.	./.	./.
chr7	148950895	rs34185245	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:32,16:30:48:0.333:2	0/1:11,9:31:20:0.450:2	./.	./.	./.	./.	0/1:36,20:31:56:0.357:2	./.	./.	./.	./.
chr7	149129829	rs17852167	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,13:29:23:0.565:2	./.	./.	./.	0/1:12,13:29:25:0.520:2	./.	./.	./.
chr7	149133877	rs368317468	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,40:32:107:0.374:2	./.	./.	./.
chr7	149152770	rs3735319	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:8,4:33:12:0.333:2	./.	0/1:0,2:33:2:1.00:2	0/1:6,3:29:10:0.333:2	./.	./.	0/1:4,4:32:8:0.500:2	0/1:1,8:29:9:0.889:2	./.	0/1:3,6:32:9:0.667:2	0/1:7,8:30:15:0.533:2
chr7	149152906	rs3735318	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,23:32:41:0.561:2	0/1:30,12:31:42:0.286:2	0/1:0,9:32:9:1.00:2	0/1:29,30:33:59:0.508:2	./.	0/1:30,25:32:55:0.455:2	0/1:32,40:32:72:0.556:2	0/1:2,77:32:79:0.975:2	0/1:31,36:33:67:0.537:2	0/1:39,53:33:92:0.576:2	0/1:49,42:33:91:0.462:2
chr7	149191319	rs75141970	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:31,5:31:36:0.139:2	./.	./.	./.	0/1:34,7:32:42:0.171:2	0/1:22,3:32:25:0.120:2	0/1:12,9:24:21:0.429:2	./.	./.	0/1:13,7:30:20:0.350:2	./.
chr7	149191460	rs112293204	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:62,47:32:109:0.431:2	0/1:37,40:32:77:0.519:2	0/1:1,18:32:19:0.947:2	./.	./.	./.	./.	0/1:14,177:32:191:0.927:2	./.	./.	./.
chr7	149191527	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:160,5:29:165:0.030:2	./.	./.	./.	./.	./.	./.
chr7	149255869	rs180962011	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,12:32:31:0.387:2	./.	./.	./.	./.	./.	./.
chr7	149317062	rs1808231	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:40,54:31:94:0.574:2	0/1:12,21:31:33:0.636:2	./.	0/1:44,46:31:90:0.511:2	0/1:1,56:31:57:0.982:2	0/1:59,36:30:95:0.379:2	0/1:47,41:31:88:0.466:2	./.	0/1:59,60:31:120:0.504:2	0/1:58,53:31:111:0.477:2	./.
chr7	149318375	rs354058	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:2,6:31:8:0.750:2	./.	0/1:0,18:31:18:1.00:2	0/1:1,14:32:15:0.933:2	0/1:1,19:30:20:0.950:2	0/1:0,7:32:7:1.00:2	./.	0/1:0,9:33:9:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,11:27:11:1.00:2
chr7	149318409	rs62490571	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,6:28:27:0.222:2	0/1:2,6:29:8:0.750:2	./.	0/1:27,7:29:34:0.206:2	0/1:0,15:30:15:1.00:2	0/1:18,13:31:31:0.419:2	0/1:10,7:31:17:0.412:2	./.	0/1:9,4:30:13:0.308:2	0/1:15,7:28:22:0.318:2	0/1:22,4:29:26:0.154:2
chr7	149318516	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:112,4:32:116:0.034:2	./.	./.	./.	./.	./.	./.	0/1:187,7:32:194:0.036:2	./.	./.	./.
chr7	149416771	rs10258658	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,15:31:43:0.349:2	./.	./.	./.	0/1:31,20:32:51:0.392:2	0/1:18,8:33:26:0.308:2	0/1:21,19:31:40:0.475:2
chr7	149418590	rs201374780	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,26:33:53:0.491:2	./.	./.	./.	./.
chr7	149419635	rs75701347	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,15:30:41:0.366:2	./.	./.	./.	0/1:20,19:29:39:0.487:2	0/1:19,17:29:36:0.472:2	0/1:26,22:31:48:0.458:2
chr7	149419993	rs184180126	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,32:33:63:0.508:2
chr7	149421773	rs7791608	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,24:29:46:0.522:2	0/1:26,20:28:46:0.435:2	0/1:23,28:29:51:0.549:2	./.	./.	0/1:27,18:29:45:0.400:2	0/1:31,24:28:55:0.436:2	0/1:28,17:28:45:0.378:2
chr7	149427409	rs709065	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,4:32:10:0.400:2	0/1:2,6:32:8:0.750:2	./.	0/1:5,9:32:14:0.643:2	0/1:0,9:31:9:1.00:2	./.	0/1:4,9:31:13:0.692:2	0/1:0,23:32:23:1.00:2	0/1:0,14:34:14:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,13:32:13:1.00:2
chr7	149428812	rs62617118	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:19,14:32:33:0.424:2	0/1:15,5:31:20:0.250:2	./.	./.	./.	./.	./.	./.	./.	0/1:33,17:32:50:0.340:2	./.
chr7	149430367	rs73725583	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,16:29:35:0.457:2	0/1:7,6:27:13:0.462:2	0/1:6,11:31:17:0.647:2
chr7	149462523	rs855668	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,32:33:83:0.386:2	0/1:46,24:31:70:0.343:2	0/1:46,31:33:78:0.403:2	0/1:35,23:33:58:0.397:2	./.	./.	./.	./.
chr7	149473111	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,6:32:115:0.052:2	./.	./.	./.	./.
chr7	149473203	rs148273580	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,32:30:70:0.457:2	./.	./.	./.	./.	./.	./.
chr7	149473584	rs181803407	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,13:30:23:0.565:2	./.	./.	./.	./.	./.	./.
chr7	149473614	rs117048984	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,13:33:18:0.722:2	./.	./.	./.	./.	./.	./.	./.
chr7	149474393	rs709061	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,26:28:50:0.520:2	0/1:25,21:29:46:0.457:2	0/1:30,20:29:50:0.400:2	0/1:17,10:30:27:0.370:2	./.	./.	./.	./.
chr7	149474804	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,4:26:42:0.095:2	./.	./.	./.	./.	./.	./.
chr7	149479335	rs855680	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,14:32:36:0.389:2	./.	0/1:30,13:32:43:0.302:2	./.	./.	./.	./.
chr7	149480226	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:181,12:33:193:0.062:2	./.	./.	./.	./.	./.	./.
chr7	149481994	rs73168055	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,33:31:56:0.589:2
chr7	149482764	rs75029939	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,64:31:120:0.533:2	./.	./.	./.	./.	./.	./.
chr7	149483237	rs77510079	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,4:29:76:0.053:2	0/1:46,50:31:96:0.521:2	./.	0/1:16,38:32:54:0.704:2	./.	0/1:22,31:32:53:0.585:2	./.	./.
chr7	149484590	rs10262505	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,20:25:58:0.345:2	./.	./.	./.	./.	./.	./.
chr7	149484798	rs62490656	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:9,7:27:16:0.438:2	./.	./.	0/1:12,15:26:27:0.556:2	./.	./.	./.	0/1:23,14:28:37:0.378:2	./.	0/1:8,13:24:21:0.619:2	./.
chr7	149485018	rs62617120	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,12:31:24:0.500:2	0/1:5,8:32:13:0.615:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	149485059	rs709060	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,18:29:39:0.462:2	./.	0/1:23,17:29:40:0.425:2	./.	0/1:12,11:29:23:0.478:2	./.	./.
chr7	149485455	rs2079335	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,21:31:33:0.636:2	./.	./.	./.	./.	./.	./.
chr7	149486294	rs855691	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,9:29:35:0.257:2	./.	0/1:28,5:33:33:0.152:2	./.	./.	./.	./.
chr7	149486382	rs2074704	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,7:28:23:0.304:2	./.	0/1:8,3:29:11:0.273:2	./.	./.	./.	./.
chr7	149493476	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,4:32:133:0.030:2	./.	./.	./.	./.	./.	./.
chr7	149493782	rs76190154	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,11:32:28:0.393:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	149495200	rs142784210	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,27:31:48:0.563:2	./.	0/1:30,34:30:64:0.531:2	./.	./.	./.	./.	./.
chr7	149497421	rs56921891	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,36:31:36:1.00:2	./.	./.	./.	./.	./.	./.
chr7	149498893	rs77858430	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,41:32:106:0.387:2	./.	./.	./.	./.
chr7	149498903	rs2074689	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,34:28:93:0.366:2	./.	./.	./.	./.
chr7	149499284	rs56163742	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,6:31:7:0.857:2	./.	./.	./.	./.
chr7	149500777	rs149826000	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:31:74:0.054:2	./.
chr7	149501113	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,7:33:32:0.219:2	./.	./.
chr7	149501156	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:34:68:0.059:2	./.	./.	./.	./.	./.
chr7	149503834	rs141503732	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,65:31:157:0.414:2
chr7	149503843	rs10260959	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,96:32:181:0.533:2	./.	./.	./.	./.	./.	./.	./.
chr7	149505703	rs144228485	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,12:27:46:0.261:2	0/1:15,7:28:22:0.318:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	149509675	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,4:31:133:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr7	149510734	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:32:183:0.022:2	./.	./.
chr7	149511902	rs62492762	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,4:30:9:0.444:2	./.	0/1:1,4:29:5:0.800:2	0/1:0,4:32:4:1.00:2	./.	./.
chr7	149511985	rs10952230	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:32:33:1.00:2	0/1:0,14:32:14:1.00:2	0/1:2,2:33:4:0.500:2	0/1:0,45:32:45:1.00:2	0/1:0,61:32:61:1.00:2	0/1:1,42:32:43:0.977:2	0/1:0,34:32:34:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,67:33:67:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,29:32:29:1.00:2
chr7	149513077	rs2240362	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,21:32:55:0.382:2	./.	0/1:24,25:32:49:0.510:2	0/1:32,27:32:59:0.458:2	./.	./.
chr7	149513152	rs7791767	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:31:8:0.750:2	./.	./.	./.	./.	./.	./.	./.
chr7	149513560	rs12674102	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:10,8:30:18:0.444:2	0/1:4,4:31:8:0.500:2	./.	0/1:15,7:30:22:0.318:2	./.	0/1:23,14:30:37:0.378:2	./.	./.	0/1:13,3:32:16:0.188:2	./.	./.
chr7	149515103	rs10250401	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,22:25:34:0.647:2	./.	./.	./.	./.	./.	./.	./.
chr7	149515754	rs740113	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:26:4:0.750:2	./.	0/1:3,3:28:6:0.500:2	./.	./.	./.	./.	./.
chr7	149515775	rs1557955	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:30:8:0.750:2	./.	./.	./.	./.	./.	./.	./.
chr7	149515796	rs1557956	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,9:32:12:0.750:2	./.	./.	./.	./.	./.	./.	./.
chr7	149516486	rs6464034	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:33:15:0.400:2	./.	0/1:13,7:29:20:0.350:2	./.	./.	0/1:4,4:33:8:0.500:2	./.	./.
chr7	149516881	rs1005603	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,25:30:57:0.439:2	./.	./.	./.	./.	./.	./.	./.
chr7	149517978	rs12536873	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,22:31:68:0.324:2	0/1:39,30:31:69:0.435:2	./.	./.
chr7	149517998	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,24:32:53:0.453:2	./.	./.	./.	./.	./.	./.
chr7	149518148	rs10233245	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,3:31:16:0.188:2	./.	./.	./.	./.	./.
chr7	149518769	rs78529309	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,22:28:40:0.550:2	./.	0/1:18,22:29:40:0.550:2	./.	./.	./.
chr7	149518961	rs1008335	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,84:33:172:0.488:2	./.	0/1:102,89:32:191:0.466:2	./.	0/1:116,75:32:191:0.393:2	0/1:110,85:33:195:0.436:2	./.	./.
chr7	149519184	rs1008336	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:31:12:0.667:2	./.	./.	./.	./.	./.	./.	./.
chr7	149519733	rs117822886	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,27:30:52:0.519:2	./.	./.	./.	0/1:19,19:30:38:0.500:2
chr7	149521183	rs4389841	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,25:32:58:0.431:2	./.	./.	./.	./.	./.	./.	./.
chr7	149521544	rs12673475	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:31:8:0.375:2	./.	./.	./.	./.	./.	./.	./.
chr7	149522162	rs62617122	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,13:29:27:0.481:2	./.	./.	./.	./.	./.	./.	./.
chr7	149523195	rs78492471	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,22:33:37:0.595:2	./.	0/1:9,14:32:23:0.609:2	0/1:14,17:33:31:0.548:2	./.	0/1:9,14:34:23:0.609:2	./.	0/1:7,6:32:13:0.462:2
chr7	149523277	rs1004200	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,9:29:27:0.333:2	./.	0/1:19,9:28:28:0.321:2	./.	0/1:14,6:27:20:0.300:2	0/1:24,20:28:44:0.455:2	./.	./.
chr7	149523584	rs62492839	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,59:32:117:0.504:2	./.	0/1:70,63:32:133:0.474:2	0/1:58,59:33:117:0.504:2	./.	./.
chr7	149524913	rs12534509	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,81:31:152:0.540:2	./.	0/1:83,70:30:153:0.458:2	0/1:54,56:32:110:0.509:2	./.	./.
chr7	149528262	rs10261977	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,55:31:111:0.495:2	./.	./.	./.	./.	./.	./.	./.
chr7	149529970	rs55976638	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,24:30:55:0.436:2	0/1:22,12:30:34:0.353:2	0/1:5,7:30:12:0.583:2	0/1:36,29:27:65:0.446:2	0/1:21,40:30:61:0.656:2	0/1:42,30:30:72:0.417:2	0/1:28,21:31:49:0.429:2	./.	./.	./.	0/1:15,31:28:46:0.674:2
chr7	149530894	rs6960187	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,46:31:82:0.561:2	./.	./.	./.	0/1:64,51:31:115:0.443:2	./.	0/1:35,37:33:72:0.514:2	./.
chr7	149543269	rs62621204	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,45:32:102:0.441:2	./.	./.
chr7	149556518	rs4725833	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,32:32:32:1.00:2	0/1:0,14:33:14:1.00:2	./.	0/1:16,20:32:36:0.556:2	0/1:22,23:32:45:0.511:2	0/1:21,17:32:38:0.447:2	0/1:22,20:32:42:0.476:2	0/1:34,19:32:53:0.358:2	0/1:13,19:32:32:0.594:2	0/1:29,6:31:35:0.171:2	0/1:0,33:32:33:1.00:2
chr7	149558409	rs2240361	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,48:31:48:1.00:2	./.	0/1:0,85:32:85:1.00:2	0/1:27,30:32:57:0.526:2	0/1:0,76:32:76:1.00:2	0/1:31,35:33:66:0.530:2	0/1:1,79:32:80:0.988:2	0/1:33,37:33:70:0.529:2	0/1:0,50:33:50:1.00:2	0/1:0,55:32:55:1.00:2
chr7	149559273	rs2074700	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,56:31:57:0.982:2	0/1:1,24:32:25:0.960:2	./.	0/1:52,35:31:87:0.402:2	0/1:49,39:30:88:0.443:2	0/1:48,35:31:83:0.422:2	0/1:59,39:31:98:0.398:2	0/1:0,70:30:70:1.00:2	0/1:39,44:32:83:0.530:2	0/1:0,57:31:57:1.00:2	0/1:2,74:31:76:0.974:2
chr7	149559465	rs2074701	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,38:30:41:1.00:2	0/1:1,32:31:33:0.970:2	./.	0/1:38,42:31:80:0.525:2	0/1:68,64:31:132:0.485:2	0/1:42,41:31:84:0.494:2	0/1:38,57:31:95:0.600:2	0/1:0,90:31:90:1.00:2	0/1:24,30:29:54:0.556:2	0/1:0,42:30:42:1.00:2	0/1:1,51:31:52:0.981:2
chr7	149561323	rs62621237	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,11:30:22:0.500:2	./.
chr7	150027658	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,4:29:94:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr7	150028958	rs3735172	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,18:31:47:0.383:2	./.	./.	0/1:30,38:32:68:0.559:2	0/1:38,36:32:74:0.486:2	./.	./.
chr7	150033986	.	C	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,5:24:25:0.200:2	./.	./.	./.	0/1:31,16:16:47:0.340:2	0/1:35,8:20:43:0.186:2	0/1:36,9:18:45:0.200:2	0/1:45,12:18:57:0.211:2	./.	0/1:38,6:23:44:0.136:2	./.
chr7	150034184	rs3735170	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,16:29:36:0.444:2	./.	./.	0/1:24,15:29:39:0.385:2	0/1:12,15:30:27:0.556:2	./.	./.
chr7	150034378	rs3735169	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,9:33:37:0.243:2	./.	./.	0/1:15,5:31:20:0.250:2	0/1:19,9:34:28:0.321:2	./.	./.
chr7	150035183	rs11538922	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,54:32:123:0.439:2	./.	./.	0/1:74,64:32:138:0.464:2	0/1:42,48:34:90:0.533:2	./.	./.
chr7	150037660	rs1047207	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,6:29:9:0.667:2	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.
chr7	150068371	rs3735165	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,14:26:47:0.298:2	./.	0/1:24,15:26:39:0.385:2	0/1:27,21:27:48:0.438:2	./.	./.	./.
chr7	150068605	rs17173702	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,16:31:19:0.842:2	./.	./.	0/1:11,17:31:28:0.607:2	0/1:12,9:32:21:0.429:2	./.	./.
chr7	150068620	rs17173703	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,17:30:25:0.680:2	./.	./.	0/1:13,26:30:39:0.667:2	0/1:12,7:32:19:0.368:2	./.	./.
chr7	150068933	rs6722	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,8:28:18:0.444:2	0/1:5,3:30:8:0.375:2	./.	./.
chr7	150070446	rs3192130	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,32:29:66:0.492:2	./.	./.	./.	./.
chr7	150070630	rs1051760	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,17:31:46:0.370:2	./.	0/1:23,17:31:40:0.425:2	0/1:26,14:32:40:0.350:2	0/1:29,30:33:59:0.508:2	./.	./.
chr7	150070663	rs1051764	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,18:31:51:0.353:2	./.	0/1:37,24:32:61:0.393:2	0/1:36,17:32:53:0.321:2	0/1:40,29:33:69:0.420:2	./.	./.
chr7	150070814	rs1051823	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,30:32:52:0.577:2	./.	0/1:44,24:32:68:0.353:2	0/1:34,40:32:74:0.541:2	0/1:34,23:33:57:0.404:2	./.	./.
chr7	150093701	rs940453	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,61:31:62:0.984:2	0/1:0,25:31:25:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,64:31:64:1.00:2	0/1:44,26:30:70:0.371:2	0/1:0,56:31:56:1.00:2	0/1:0,32:29:32:1.00:2	0/1:0,84:30:84:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,50:31:50:1.00:2	0/1:27,15:32:42:0.357:2
chr7	150094853	rs7780011	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.
chr7	150163837	rs2140595	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,43:32:43:1.00:2	0/1:0,26:32:26:1.00:2	./.	0/1:19,21:32:40:0.525:2	./.	0/1:17,22:32:39:0.564:2	./.	./.	0/1:0,49:33:49:1.00:2	0/1:9,22:32:31:0.710:2	0/1:32,33:32:65:0.508:2
chr7	150164155	rs61748320	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,41:29:109:0.376:2	./.	./.	./.	./.
chr7	150171621	rs376859130	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:34:136:0.029:2
chr7	150171710	rs60114833	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,53:29:55:0.981:2	0/1:0,22:26:22:1.00:2	./.	0/1:35,17:28:52:0.327:2	./.	0/1:43,19:27:62:0.306:2	./.	./.	0/1:0,76:28:76:1.00:2	0/1:27,34:28:61:0.557:2	0/1:38,37:27:75:0.493:2
chr7	150174336	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,9:15:68:0.132:2	./.	0/1:62,11:14:73:0.151:2	./.	./.
chr7	150217089	rs7800829	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,44:30:76:0.579:2	./.	0/1:34,41:30:76:0.547:2	./.	./.	./.	./.	./.
chr7	150217248	rs3735081	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,35:32:36:0.972:2	0/1:2,39:32:41:0.951:2	0/1:27,23:30:50:0.460:2	0/1:24,14:31:38:0.368:2	0/1:31,17:33:48:0.354:2	0/1:22,22:33:44:0.500:2	./.	0/1:32,25:32:57:0.439:2
chr7	150217309	rs3735080	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,25:32:64:0.391:2	./.	./.	./.	./.
chr7	150217335	rs3735079	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,22:29:59:0.373:2	./.	./.	./.	./.	./.	./.
chr7	150218002	rs10578	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,20:31:41:0.488:2	./.	0/1:18,13:31:31:0.419:2	./.	./.	./.	./.	./.
chr7	150324825	rs3735084	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,24:32:54:0.444:2	0/1:19,37:32:56:0.661:2	./.	0/1:1,79:32:80:0.988:2	0/1:40,33:30:73:0.452:2	0/1:40,40:31:80:0.500:2	./.	./.	0/1:42,47:33:89:0.528:2	0/1:28,26:32:54:0.481:2	0/1:42,39:32:81:0.481:2
chr7	150325175	rs13234724	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,19:33:32:0.594:2	./.	./.	./.	./.
chr7	150389677	rs6952002	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,29:33:57:0.509:2	0/1:19,14:32:33:0.424:2	./.	0/1:38,41:30:79:0.519:2	0/1:27,23:32:50:0.460:2	0/1:39,27:32:66:0.409:2	./.	./.	0/1:25,29:33:54:0.537:2	0/1:21,20:33:41:0.488:2	0/1:30,33:32:63:0.524:2
chr7	150389856	rs2075078	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:66,56:30:122:0.459:2	0/1:32,38:29:70:0.543:2	./.	./.	./.	./.	./.	./.	./.	0/1:50,39:29:89:0.438:2	./.
chr7	150416194	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:32:95:0.042:2	./.	./.	./.
chr7	150417677	rs4725358	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:16,11:32:27:0.407:2	0/1:8,7:32:15:0.467:2	./.	./.	./.	./.	./.	./.	./.	0/1:21,11:31:32:0.344:2	./.
chr7	150439381	rs145457104	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,4:29:88:0.045:2	./.	./.	./.	./.	./.	./.
chr7	150439500	rs759011	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,19:30:39:0.487:2	./.	0/1:27,22:33:49:0.449:2	./.	0/1:16,25:33:41:0.610:2	./.	0/1:22,21:32:43:0.488:2
chr7	150440043	rs1046355	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,35:31:62:0.565:2	./.	0/1:33,35:31:68:0.515:2	./.	0/1:36,66:32:102:0.647:2	./.	0/1:55,44:30:99:0.444:2
chr7	150446936	rs2058447	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:58,53:32:111:0.477:2	0/1:36,32:32:68:0.471:2	./.	./.	0/1:19,27:31:46:0.587:2	./.	0/1:26,31:32:57:0.544:2	./.	0/1:46,60:33:106:0.566:2	0/1:51,64:32:115:0.557:2	0/1:90,74:32:164:0.451:2
chr7	150447027	rs28505524	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,8:31:28:0.286:2	./.	./.	./.	./.
chr7	150488616	rs2302479	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,15:30:15:1.00:2	0/1:0,4:29:4:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,24:30:24:1.00:2	0/1:7,10:28:17:0.588:2	0/1:0,11:29:11:1.00:2	./.	0/1:29,11:27:40:0.275:2	0/1:2,21:29:23:0.913:2	0/1:0,10:30:10:1.00:2	0/1:0,21:28:21:1.00:2
chr7	150490176	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,10:34:115:0.087:2	./.
chr7	150490238	rs17256042	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,17:31:24:0.708:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	150490376	rs2072443	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:32:5:1.00:2	0/1:25,37:31:63:0.597:2	./.	0/1:23,33:30:56:0.589:2	0/1:65,5:32:70:0.071:2	./.	./.	0/1:15,24:31:39:0.615:2	0/1:22,34:32:56:0.607:2
chr7	150490615	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:32:85:0.047:2	./.	./.	./.	./.	./.
chr7	150491084	rs3173833	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,118:30:118:1.00:2	0/1:0,70:29:70:1.00:2	0/1:1,12:28:13:0.923:2	0/1:1,157:30:158:0.994:2	0/1:84,104:30:188:0.553:2	0/1:0,160:29:160:1.00:2	./.	./.	0/1:0,141:31:142:1.00:2	0/1:0,91:30:91:1.00:2	0/1:1,150:30:151:0.993:2
chr7	150493495	rs11546671	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,12:32:23:0.522:2	./.	./.	./.	./.
chr7	150493503	rs140393291	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,12:31:36:0.343:2	0/1:6,7:32:13:0.538:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	150498809	rs1127958	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.
chr7	150500520	rs741066	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:56,43:32:99:0.434:2	0/1:20,26:32:46:0.565:2	./.	./.	0/1:0,52:32:52:1.00:2	./.	./.	0/1:0,89:32:89:1.00:2	./.	./.	0/1:35,48:32:83:0.578:2
chr7	150500729	rs741064	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,22:32:22:1.00:2	0/1:0,14:33:14:1.00:2	./.	0/1:16,8:32:24:0.333:2	0/1:0,9:31:9:1.00:2	0/1:0,24:33:24:1.00:2	0/1:12,9:33:21:0.429:2	0/1:0,21:33:21:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,19:32:19:1.00:2	0/1:15,11:30:26:0.423:2
chr7	150501455	rs10378	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:43,27:32:70:0.386:2	0/1:35,25:32:60:0.417:2	./.	0/1:94,37:31:131:0.282:2	./.	0/1:3,83:31:86:0.965:2	./.	./.	0/1:0,83:32:83:1.00:2	0/1:1,78:32:79:0.987:2	./.
chr7	150501516	rs9088	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,88:32:89:0.989:2	0/1:1,61:32:62:0.984:2	0/1:11,3:30:14:0.214:2	0/1:103,50:32:154:0.327:2	0/1:0,134:32:134:1.00:2	0/1:1,103:32:104:0.990:2	./.	0/1:3,129:32:132:0.977:2	0/1:0,107:33:107:1.00:2	0/1:0,94:32:94:1.00:2	0/1:77,47:32:124:0.379:2
chr7	150553605	rs10156191	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:11,14:31:25:0.560:2	0/1:8,6:31:14:0.429:2	0/1:1,3:31:4:0.750:2	./.	0/1:12,18:31:30:0.600:2	./.	0/1:10,14:31:24:0.583:2	./.	0/1:14,10:32:24:0.417:2	./.	./.
chr7	150554553	rs1049742	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:30:7:0.714:2	./.	./.	./.	./.	./.	0/1:29,38:31:67:0.567:2	0/1:19,19:31:38:0.500:2	./.
chr7	150554887	rs2071514	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,7:32:26:0.269:2
chr7	150555915	rs10893	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,40:32:76:0.526:2	0/1:53,37:30:90:0.411:2	0/1:58,38:30:96:0.396:2
chr7	150556002	rs1049748	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,26:31:46:0.565:2	0/1:17,6:31:23:0.261:2	0/1:1,4:32:5:0.800:2	0/1:27,28:33:55:0.509:2	./.	0/1:0,64:32:64:1.00:2	./.	0/1:32,32:32:64:0.500:2	0/1:21,19:33:40:0.475:2	./.	0/1:28,17:32:45:0.378:2
chr7	150556055	rs6943147	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:32:39:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,49:33:50:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,29:32:29:1.00:2
chr7	150556056	rs6943420	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:31:39:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,29:31:29:1.00:2
chr7	150557622	rs12179	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	./.	./.	0/1:35,3:32:39:0.079:2	0/1:26,17:32:43:0.395:2	0/1:15,16:32:31:0.516:2	0/1:4,19:33:23:0.826:2
chr7	150557665	rs1049793	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:31:5:0.800:2	./.	./.	./.	./.	./.	0/1:38,17:27:55:0.309:2	0/1:11,19:31:30:0.633:2	0/1:15,20:32:35:0.571:2
chr7	150644130	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:135,4:32:139:0.029:2	./.	./.	./.	./.	./.	./.
chr7	150645534	rs1805123	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:29:13:0.308:2	./.	0/1:4,3:26:7:0.429:2	./.	./.	0/1:0,8:27:8:1.00:2	./.	0/1:3,3:26:6:0.500:2
chr7	150647450	rs199472988	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:32:81:0.049:2	./.	./.
chr7	150648198	rs1137617	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:6,9:30:15:0.600:2	./.	./.	0/1:9,8:30:17:0.471:2	./.	0/1:0,33:30:33:1.00:2	./.	0/1:10,4:30:14:0.286:2	0/1:0,20:32:20:1.00:2	./.	0/1:0,12:29:12:1.00:2
chr7	150648612	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:34:106:0.038:2	./.	./.
chr7	150648789	rs1805121	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,61:32:132:0.462:2	./.	0/1:69,65:32:135:0.485:2	./.	./.	0/1:61,49:32:110:0.445:2
chr7	150649531	rs1805120	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,45:31:94:0.479:2	./.	./.	0/1:34,25:31:59:0.424:2
chr7	150649603	rs740952	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,79:31:175:0.451:2	./.	./.	0/1:59,57:32:116:0.491:2
chr7	150695726	rs1549758	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,30:27:31:0.968:2	0/1:1,30:29:31:0.968:2	0/1:0,7:30:7:1.00:2	0/1:22,17:29:39:0.436:2	0/1:29,6:28:35:0.171:2	./.	0/1:0,17:29:17:1.00:2	0/1:0,12:28:12:1.00:2	0/1:0,24:28:24:1.00:2	0/1:17,14:27:31:0.452:2	0/1:20,7:29:27:0.259:2
chr7	150696111	rs1799983	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,30:32:61:0.492:2	0/1:22,15:29:37:0.405:2	0/1:0,8:34:8:1.00:2	0/1:51,26:32:77:0.338:2	0/1:45,33:32:78:0.423:2	./.	0/1:0,38:32:38:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,68:33:68:1.00:2	0/1:29,29:33:58:0.500:2	0/1:36,38:31:74:0.514:2
chr7	150704250	rs2566514	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:22,24:30:46:0.522:2	0/1:11,14:31:25:0.560:2	0/1:0,8:28:8:1.00:2	./.	0/1:17,29:30:47:0.630:2	./.	./.	./.	0/1:0,27:31:27:1.00:2	./.	./.
chr7	150707225	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:31:29:0.138:2	./.
chr7	150713827	rs3800789	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,44:30:83:0.530:2	./.	./.	./.
chr7	150715817	rs1835428	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:3,3:30:6:0.500:2	./.	./.	0/1:0,10:30:10:1.00:2	./.	0/1:0,3:32:3:1.00:2	0/1:0,3:26:3:1.00:2	0/1:5,6:30:11:0.545:2	0/1:0,6:30:6:1.00:2	./.	./.
chr7	150720216	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:34:196:0.020:2	./.	./.
chr7	150721090	rs117030356	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,21:31:46:0.457:2	./.	./.	./.
chr7	150730999	rs4148844	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,8:31:22:0.364:2	./.	0/1:12,8:30:20:0.400:2	./.	./.	./.	./.	./.
chr7	150733025	rs2303926	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,20:30:48:0.417:2	0/1:25,27:32:52:0.519:2	./.	0/1:0,56:31:56:1.00:2	./.	0/1:27,17:32:44:0.386:2	0/1:23,16:32:39:0.410:2	./.
chr7	150739054	rs56198402	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,9:30:22:0.409:2	./.	0/1:6,17:31:23:0.739:2	./.	./.	./.	./.	./.
chr7	150741164	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:34:106:0.038:2	./.	./.
chr7	150742388	rs61741011	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,19:30:43:0.442:2	./.	0/1:31,17:33:48:0.354:2	./.	./.	./.	./.	./.
chr7	150747937	rs11977275	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,13:31:34:0.382:2	./.	./.	0/1:2,14:31:16:0.875:2	./.	0/1:12,9:33:21:0.429:2	0/1:8,13:30:21:0.619:2	0/1:13,10:30:23:0.435:2
chr7	150752608	rs2069456	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,26:27:72:0.361:2	./.	./.	./.	./.	./.
chr7	150761314	rs2303929	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,61:31:106:0.575:2	./.	./.	./.	./.	./.
chr7	150761680	rs1050702	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,78:30:78:1.00:2	./.	0/1:29,39:30:68:0.574:2	0/1:20,56:30:76:0.737:2	./.	0/1:39,39:31:78:0.500:2	0/1:32,27:29:59:0.458:2	0/1:12,19:28:31:0.613:2
chr7	150763655	rs2229549	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:27:7:0.571:2	./.	./.	./.	0/1:3,3:33:6:0.500:2	0/1:5,4:32:9:0.444:2	./.	./.	0/1:13,7:30:20:0.350:2	0/1:4,9:32:13:0.692:2	./.
chr7	150764034	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,20:30:35:0.571:2	./.
chr7	150765065	rs2229550	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,10:27:20:0.500:2	0/1:8,6:27:14:0.429:2	./.	0/1:0,18:27:18:1.00:2	0/1:15,9:29:24:0.375:2	0/1:0,14:27:14:1.00:2	0/1:0,8:29:8:1.00:2	./.	0/1:0,16:27:16:1.00:2	0/1:0,10:30:10:1.00:2	0/1:9,7:26:16:0.438:2
chr7	150768786	rs2303937	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,45:31:45:1.00:2	./.	0/1:1,52:31:53:0.981:2	0/1:45,38:31:83:0.458:2	./.	0/1:34,26:32:60:0.433:2	./.	0/1:25,24:31:50:0.490:2
chr7	150768849	rs11542749	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,50:31:106:0.472:2	./.	./.	./.	./.
chr7	150774263	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,13:16:140:0.093:2	./.	./.	./.
chr7	150774269	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:111,18:13:130:0.140:2	./.	0/1:115,11:14:126:0.087:2	0/1:106,15:13:121:0.124:2	./.	./.	./.
chr7	150839324	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,25:32:64:0.391:2	./.	./.	./.	./.	./.	./.
chr7	150864240	rs13241978	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.
chr7	150873331	rs104886486	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,56:30:110:0.509:2	0/1:38,30:30:68:0.441:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	150873664	rs919533	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,65:30:177:0.367:2	./.	0/1:76,63:30:139:0.453:2	0/1:101,66:30:168:0.395:2	./.	./.	./.	0/1:93,71:30:164:0.433:2
chr7	150873754	rs62489646	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,54:31:124:0.435:2	./.	./.	./.
chr7	150878260	rs2253592	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:22,17:30:39:0.436:2	0/1:5,14:28:19:0.737:2	./.	0/1:1,56:29:57:0.982:2	./.	0/1:20,27:30:47:0.574:2	0/1:12,17:30:29:0.586:2	0/1:27,29:27:56:0.518:2	0/1:41,29:29:70:0.414:2	0/1:1,34:29:35:0.971:2	0/1:16,7:28:23:0.304:2
chr7	150878332	rs61743170	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,38:33:66:0.576:2	./.	./.	./.
chr7	150884606	rs104886469	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,25:30:44:0.568:2	./.	./.
chr7	150912750	rs12538823	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,9:31:18:0.500:2	0/1:65,50:30:115:0.435:2	./.	./.	./.	./.	./.	./.	./.
chr7	150912786	rs7786151	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,7:29:18:0.389:2	0/1:54,40:29:94:0.426:2	./.	./.	./.	./.	./.	./.	./.
chr7	150915948	rs7782699	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,22:32:39:0.564:2	./.	./.	0/1:22,30:32:52:0.577:2	./.
chr7	150915958	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,23:33:44:0.523:2	./.	./.
chr7	150916228	rs6949587	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,55:32:55:1.00:2	0/1:0,38:31:38:1.00:2	./.	0/1:40,31:32:71:0.437:2	0/1:0,61:31:61:1.00:2	0/1:0,66:31:66:1.00:2	0/1:54,30:32:84:0.357:2	./.	0/1:50,41:33:91:0.451:2	./.	./.
chr7	150920818	rs141298266	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,33:32:64:0.516:2
chr7	150921950	rs6464133	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,120:32:123:0.976:2	0/1:1,84:32:85:0.988:2	0/1:0,19:32:19:1.00:2	0/1:0,162:32:162:1.00:2	0/1:4,172:31:176:0.977:2	0/1:0,147:32:147:1.00:2	0/1:2,173:32:175:0.989:2	0/1:94,88:32:182:0.484:2	0/1:101,75:33:176:0.426:2	0/1:88,76:32:164:0.463:2	./.
chr7	150931206	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:29:53:0.075:2	./.	./.
chr7	150931268	rs2608293	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:30:37:1.00:2	0/1:0,32:29:32:1.00:2	0/1:2,3:31:5:0.600:2	0/1:22,19:30:41:0.463:2	0/1:0,44:28:44:1.00:2	0/1:1,50:30:51:0.980:2	0/1:19,23:30:42:0.548:2	./.	./.	./.	./.
chr7	150934975	rs2487154	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:29:29:1.00:2	0/1:0,19:28:19:1.00:2	0/1:7,6:28:13:0.462:2	0/1:26,16:27:42:0.381:2	0/1:0,44:27:44:1.00:2	0/1:0,48:28:48:1.00:2	0/1:27,18:28:45:0.400:2	./.	./.	./.	./.
chr7	150935430	rs3748098	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:33:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	150972189	rs2072298	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,26:27:57:0.456:2	0/1:12,10:32:22:0.455:2	0/1:0,4:30:4:1.00:2	0/1:0,58:29:58:1.00:2	0/1:53,34:31:87:0.391:2	0/1:28,27:28:55:0.491:2	0/1:32,33:31:65:0.508:2	0/1:50,35:30:85:0.412:2	0/1:0,42:32:42:1.00:2	0/1:20,24:29:44:0.545:2	./.
chr7	151049983	rs73472502	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:30:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	0/1:41,30:32:71:0.423:2
chr7	151064064	rs386956	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:25,27:32:52:0.519:2	0/1:17,19:32:36:0.528:2	./.	0/1:55,54:31:109:0.495:2	./.	0/1:0,91:31:91:1.00:2	0/1:0,93:32:93:1.00:2	./.	0/1:1,108:33:110:0.991:2	./.	0/1:42,50:31:92:0.543:2
chr7	151074296	rs2159158	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,26:31:47:0.553:2	./.	0/1:27,16:31:43:0.372:2	0/1:0,27:32:27:1.00:2	./.	0/1:0,44:32:44:1.00:2	./.	0/1:28,30:31:58:0.517:2
chr7	151097323	rs11767693	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,25:30:55:0.455:2	0/1:20,21:30:41:0.512:2	./.	0/1:40,44:31:84:0.524:2	0/1:65,67:31:132:0.508:2	0/1:0,90:30:90:1.00:2	0/1:0,106:30:106:1.00:2	0/1:56,57:31:113:0.504:2	0/1:39,40:31:79:0.506:2	0/1:26,38:30:64:0.594:2	0/1:27,35:30:63:0.565:2
chr7	151106066	rs12533730	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:51,32:32:83:0.386:2	0/1:40,28:32:68:0.412:2	./.	./.	./.	./.	0/1:49,35:31:84:0.417:2	./.	0/1:67,38:32:105:0.362:2	./.	0/1:81,73:32:154:0.474:2
chr7	151164271	rs9768124	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,4:33:80:0.050:2	./.	./.	./.	0/1:120,4:35:124:0.032:2	./.	./.
chr7	151164300	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:31:100:0.040:2	./.	./.	./.	./.	./.
chr7	151168534	rs6956899	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,46:31:103:0.447:2	0/1:53,31:31:84:0.369:2	0/1:12,3:31:15:0.200:2	0/1:73,49:31:122:0.402:2	./.	./.	0/1:60,33:30:93:0.355:2	0/1:48,53:30:101:0.525:2	./.	0/1:0,86:31:87:1.00:2	0/1:0,102:31:102:1.00:2
chr7	151174510	rs78256132	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,6:32:14:0.429:2	./.	./.	./.	./.	./.
chr7	151216586	rs4275138	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,5:28:33:0.152:2	./.	0/1:27,4:31:31:0.129:2	./.	./.	./.
chr7	151680072	rs17856647	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:38,22:29:60:0.367:2	0/1:33,19:30:52:0.365:2	./.	0/1:0,57:30:57:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,54:29:54:1.00:2	0/1:0,75:29:75:1.00:2	0/1:0,79:30:79:1.00:2	0/1:0,59:29:60:1.00:2	0/1:72,29:27:101:0.287:2
chr7	151680175	rs35682935	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,38:32:73:0.521:2	0/1:17,24:32:41:0.585:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,45:32:76:0.592:2
chr7	151680185	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:30:74:0.054:2	./.	./.	./.	./.	./.
chr7	151684256	rs61729490	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:9,11:32:20:0.550:2	0/1:5,5:33:10:0.500:2	0/1:1,2:32:3:0.667:2	./.	0/1:8,16:32:24:0.667:2	./.	0/1:1,3:34:4:0.750:2	0/1:7,9:33:16:0.563:2	./.	./.	./.
chr7	151704950	rs202229298	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,4:34:55:0.073:2	./.	./.	./.	./.	./.	./.
chr7	151791485	rs191382030	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,11:29:36:0.306:2	./.	./.	./.	./.	./.	./.	./.
chr7	151856157	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:34:71:0.056:2	./.	./.
chr7	151873853	rs6464211	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:53,49:33:102:0.480:2	0/1:41,35:33:76:0.461:2	0/1:8,8:32:16:0.500:2	./.	./.	./.	./.	0/1:64,50:32:114:0.439:2	0/1:3,127:33:130:0.977:2	./.	0/1:59,77:32:136:0.566:2
chr7	151877043	rs146701329	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,4:32:76:0.053:2	./.	./.	./.	./.	./.	./.
chr7	151877048	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,4:32:79:0.051:2	./.	./.	./.	./.	./.	./.
chr7	151877127	rs13231116	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,65:31:125:0.520:2	0/1:59,63:30:122:0.516:2	./.	0/1:93,54:31:147:0.367:2	./.	./.	./.	./.
chr7	151877128	rs138464665	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,64:30:133:0.481:2	./.	./.	./.	./.	./.
chr7	151878033	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:32:151:0.026:2	./.	./.
chr7	151882657	rs78697077	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,15:29:65:0.231:2	./.	./.	./.	./.	./.	./.	./.
chr7	151882672	rs145848316	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,18:33:80:0.225:2	./.	./.
chr7	151917642	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,4:30:75:0.053:2	./.	./.	./.	./.	./.	./.
chr7	151917681	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:106,4:31:110:0.036:2	./.	./.	./.	./.	./.	./.
chr7	151917710	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:132,5:32:137:0.036:2	./.	./.	0/1:174,6:32:180:0.033:2	./.	0/1:164,5:33:169:0.030:2	./.
chr7	151917724	rs4024346	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:34:153:0.026:2	./.	0/1:167,4:32:171:0.023:2	./.
chr7	151919085	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:32:74:0.054:2	./.	./.
chr7	151919092	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:31:71:0.056:2	./.	./.	./.
chr7	151919158	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,4:31:12:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	151919690	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:193,6:33:199:0.030:2	./.	./.	./.	./.	./.	./.
chr7	151919751	rs200559566	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,8:25:169:0.047:2	./.	0/1:189,7:29:196:0.036:2	./.	./.	./.
chr7	151921114	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:187,5:31:192:0.026:2	./.	./.	./.	./.	./.	./.
chr7	151921255	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:150,5:29:155:0.032:2	0/1:115,10:30:125:0.080:2	0/1:121,7:31:128:0.055:2	./.	0/1:140,6:28:146:0.041:2	0/1:139,20:31:159:0.126:2	0/1:125,5:31:130:0.038:2	./.
chr7	151927016	rs141049734	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:174,20:32:194:0.103:2	0/1:177,20:31:197:0.102:2	./.	0/1:180,20:32:200:0.100:2	./.	./.	0/1:187,11:32:198:0.056:2	0/1:186,12:31:198:0.061:2	./.	0/1:191,8:30:199:0.040:2	./.
chr7	151927021	rs28522267	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:92,105:33:197:0.533:2	0/1:87,109:33:196:0.556:2	0/1:62,59:31:121:0.488:2	0/1:128,69:32:197:0.350:2	0/1:113,87:32:200:0.435:2	0/1:140,58:32:198:0.293:2	0/1:135,62:32:197:0.315:2	0/1:130,67:33:197:0.340:2	0/1:82,113:33:195:0.579:2	0/1:128,69:32:197:0.350:2	0/1:145,48:33:193:0.249:2
chr7	151927025	rs183684706	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:112,20:32:132:0.152:2	0/1:149,46:33:195:0.236:2	0/1:184,15:32:199:0.075:2	0/1:176,22:32:198:0.111:2	0/1:175,20:33:195:0.103:2	0/1:173,21:33:194:0.108:2	0/1:182,17:35:199:0.085:2	0/1:171,26:33:197:0.132:2	0/1:148,44:33:192:0.229:2
chr7	151927026	rs28439884	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,124:31:196:0.633:2	0/1:77,115:30:194:0.599:2	0/1:68,62:30:131:0.477:2	0/1:116,79:31:195:0.405:2	0/1:87,112:31:199:0.563:2	0/1:120,78:31:198:0.394:2	0/1:102,92:30:194:0.474:2	0/1:113,84:31:197:0.426:2	0/1:70,128:32:198:0.646:2	0/1:110,87:31:197:0.442:2	0/1:127,65:30:192:0.339:2
chr7	151932908	rs112326730	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:97,33:32:130:0.254:2	0/1:69,24:33:93:0.258:2	./.	0/1:124,39:32:163:0.239:2	0/1:110,23:31:133:0.173:2	0/1:146,20:29:166:0.120:2	0/1:80,18:31:99:0.184:2	0/1:145,23:33:168:0.137:2	0/1:117,23:32:140:0.164:2	0/1:124,33:32:157:0.210:2	0/1:126,33:30:160:0.208:2
chr7	151932916	rs111791757	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:151,8:31:159:0.050:2	./.	./.	0/1:96,5:32:101:0.050:2	0/1:162,5:32:167:0.030:2	0/1:135,5:32:140:0.036:2	./.	0/1:155,8:32:163:0.049:2
chr7	151932923	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:125,7:31:132:0.053:2	./.	./.	0/1:143,10:30:153:0.065:2	./.	./.	./.	./.	0/1:127,10:30:137:0.073:2	./.	0/1:157,6:31:163:0.037:2
chr7	151932945	rs199504848	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:104,13:31:117:0.111:2	0/1:70,10:32:80:0.125:2	0/1:12,4:34:16:0.250:2	0/1:128,7:32:135:0.052:2	0/1:97,30:30:127:0.236:2	0/1:128,10:32:138:0.072:2	0/1:89,8:30:97:0.082:2	0/1:119,20:32:139:0.144:2	0/1:119,16:32:135:0.119:2	0/1:111,19:31:130:0.146:2	0/1:113,23:31:136:0.169:2
chr7	151932946	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,6:28:133:0.045:2
chr7	151932949	rs148983031	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,10:30:125:0.080:2	./.
chr7	151932961	rs200662726	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,5:27:121:0.041:2	./.	./.	./.	./.	0/1:117,6:28:123:0.049:2	./.	0/1:103,6:24:109:0.055:2
chr7	151932965	rs142922667	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,9:33:92:0.098:2	0/1:61,5:32:66:0.076:2	0/1:13,5:32:18:0.278:2	0/1:114,5:32:119:0.042:2	0/1:87,42:31:129:0.326:2	0/1:96,7:32:103:0.068:2	0/1:76,8:32:84:0.095:2	0/1:113,27:32:140:0.193:2	0/1:103,20:33:123:0.163:2	0/1:93,20:33:113:0.177:2	0/1:84,25:33:109:0.229:2
chr7	151932990	rs76844681	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,11:32:106:0.104:2	./.	./.	0/1:96,11:32:107:0.103:2	0/1:85,6:26:91:0.066:2	./.	0/1:99,4:33:103:0.039:2
chr7	151932997	rs199831680	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,10:32:103:0.097:2
chr7	151933014	rs112773078	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:31:90:0.044:2	./.	./.	./.
chr7	151935831	rs62478303	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:96,9:33:105:0.086:2	0/1:36,6:33:42:0.143:2	./.	0/1:74,5:33:79:0.063:2	0/1:60,11:32:71:0.155:2	./.	./.	./.	0/1:76,11:33:87:0.126:2	./.	0/1:103,6:33:109:0.055:2
chr7	151935853	rs4024420	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:71,20:32:91:0.220:2	0/1:25,13:32:38:0.342:2	./.	0/1:48,7:28:55:0.127:2	0/1:53,11:32:64:0.172:2	0/1:48,4:32:52:0.077:2	0/1:33,7:32:40:0.175:2	0/1:75,11:30:86:0.128:2	0/1:46,7:32:54:0.132:2	./.	0/1:85,8:31:93:0.086:2
chr7	151935910	rs4024419	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:61,7:31:68:0.103:2	0/1:40,5:32:45:0.111:2	./.	0/1:63,4:33:67:0.060:2	0/1:68,6:32:74:0.081:2	./.	./.	0/1:92,4:32:96:0.042:2	0/1:64,8:31:72:0.111:2	0/1:76,8:33:84:0.095:2	0/1:87,7:32:95:0.074:2
chr7	151945007	rs137949498	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:137,53:32:190:0.279:2	0/1:109,38:32:147:0.259:2	0/1:21,4:31:25:0.160:2	0/1:111,78:32:189:0.413:2	0/1:123,19:32:142:0.134:2	0/1:120,71:31:191:0.372:2	0/1:116,38:32:154:0.247:2	0/1:130,60:32:190:0.316:2	0/1:176,21:33:197:0.107:2	0/1:87,104:32:191:0.545:2	0/1:90,91:32:181:0.503:2
chr7	151945051	rs2838171	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:173,15:31:188:0.080:2	./.	./.	0/1:191,6:33:197:0.030:2	0/1:187,5:34:192:0.026:2	0/1:192,6:29:199:0.030:2	./.
chr7	151945060	rs200598064	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:183,9:33:192:0.047:2	0/1:191,4:32:195:0.021:2	./.	./.	0/1:190,9:32:199:0.045:2	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.	./.
chr7	151945101	rs3896406	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:134,58:30:192:0.302:2	0/1:160,35:30:195:0.179:2	0/1:71,22:29:93:0.237:2	0/1:170,26:31:196:0.133:2	0/1:133,67:30:200:0.335:2	0/1:161,38:31:199:0.191:2	0/1:159,41:30:200:0.205:2	0/1:159,38:30:197:0.193:2	0/1:132,67:32:199:0.337:2	0/1:162,35:31:197:0.178:2	0/1:175,19:30:195:0.098:2
chr7	151945111	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,5:28:190:0.026:2	0/1:188,6:31:194:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	151945140	rs57648310	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:91,13:32:104:0.125:2	0/1:164,33:32:197:0.168:2	0/1:181,16:32:197:0.081:2	0/1:168,30:32:198:0.152:2	0/1:183,17:33:200:0.085:2	0/1:166,31:32:197:0.157:2	0/1:189,6:33:195:0.031:2	0/1:173,19:33:192:0.099:2	0/1:155,37:32:192:0.193:2
chr7	151945167	rs2537264	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:170,15:30:185:0.081:2	0/1:175,18:31:193:0.093:2	0/1:83,18:31:101:0.178:2	0/1:159,35:31:194:0.180:2	0/1:175,20:32:195:0.103:2	0/1:153,43:31:197:0.219:2	0/1:181,17:31:198:0.086:2	0/1:153,40:31:193:0.207:2	0/1:187,6:30:193:0.031:2	0/1:145,48:31:193:0.249:2	0/1:124,61:31:185:0.330:2
chr7	151945204	rs4024453	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:111,68:32:179:0.380:2	0/1:124,63:32:187:0.337:2	0/1:44,23:31:67:0.343:2	0/1:126,53:32:179:0.296:2	0/1:115,43:31:158:0.272:2	0/1:128,53:30:181:0.293:2	0/1:126,55:31:181:0.304:2	0/1:137,30:31:167:0.180:2	0/1:126,57:32:183:0.311:2	0/1:104,49:32:154:0.320:2	0/1:105,68:31:176:0.393:2
chr7	151945215	rs594178	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:169,12:27:181:0.066:2	0/1:174,14:27:188:0.074:2	0/1:58,5:28:63:0.079:2	0/1:185,12:28:197:0.061:2	0/1:165,7:27:172:0.041:2	0/1:187,11:26:198:0.056:2	0/1:174,17:26:191:0.089:2	./.	0/1:177,16:27:193:0.083:2	0/1:178,8:28:186:0.043:2	0/1:171,15:26:186:0.081:2
chr7	151945225	rs202098135	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:151,16:33:167:0.096:2	0/1:171,14:32:185:0.076:2	0/1:56,4:33:60:0.067:2	./.	./.	0/1:146,11:32:157:0.070:2	./.	0/1:175,4:32:179:0.022:2	./.	0/1:181,5:32:186:0.027:2	0/1:164,7:33:171:0.041:2
chr7	151945256	rs201234598	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,10:31:149:0.067:2	./.	0/1:150,5:32:155:0.032:2	0/1:119,4:33:123:0.033:2	./.	./.	0/1:150,6:33:156:0.038:2	0/1:174,7:34:182:0.039:2
chr7	151945291	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:33:108:0.037:2	./.	./.	./.	./.
chr7	151945313	rs372718879	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:146,7:32:154:0.046:2	0/1:98,4:31:102:0.039:2	./.	./.	./.	./.	./.	./.	./.	0/1:139,13:32:152:0.086:2	0/1:179,11:32:192:0.058:2
chr7	151945334	rs4639425	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:121,6:32:127:0.047:2	./.	./.	0/1:115,4:30:119:0.034:2	./.	0/1:107,5:32:112:0.045:2	./.	./.	0/1:122,6:29:128:0.047:2	./.	0/1:128,7:32:135:0.052:2
chr7	151945399	rs199802177	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:123,5:32:128:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr7	151945401	rs200477647	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:124,5:31:129:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr7	151945602	rs202125566	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,5:32:72:0.069:2	./.
chr7	151949698	rs140919432	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,45:29:103:0.437:2	./.	./.	./.	./.
chr7	151962134	rs146238849	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:155,18:31:173:0.104:2	0/1:87,8:31:95:0.084:2	./.	0/1:187,11:31:198:0.056:2	0/1:183,16:31:199:0.080:2	0/1:168,30:31:198:0.152:2	0/1:183,10:30:194:0.052:2	0/1:184,16:31:200:0.080:2	./.	0/1:165,32:31:197:0.162:2	0/1:176,19:32:195:0.097:2
chr7	151962168	rs138908625	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:174,24:32:198:0.121:2	0/1:156,10:32:166:0.060:2	./.	0/1:189,9:33:198:0.045:2	0/1:189,11:32:200:0.055:2	0/1:168,31:31:199:0.156:2	0/1:187,9:33:196:0.046:2	0/1:180,18:31:198:0.091:2	./.	0/1:164,29:32:193:0.150:2	0/1:175,20:32:195:0.103:2
chr7	151962176	rs62478356	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:166,33:33:199:0.166:2	0/1:133,40:32:173:0.231:2	0/1:40,6:32:46:0.130:2	0/1:174,25:33:199:0.126:2	0/1:158,40:31:198:0.202:2	0/1:174,23:32:197:0.117:2	0/1:182,15:33:197:0.076:2	0/1:135,64:32:199:0.322:2	0/1:151,49:34:200:0.245:2	0/1:160,37:32:197:0.188:2	0/1:153,41:32:194:0.211:2
chr7	151962257	rs62478357	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:132,14:33:146:0.096:2	0/1:121,14:32:135:0.104:2	0/1:43,4:33:47:0.085:2	0/1:167,22:31:189:0.116:2	./.	0/1:171,8:31:179:0.045:2	0/1:140,26:32:166:0.157:2	0/1:160,12:33:172:0.070:2	0/1:144,18:33:162:0.111:2	0/1:164,11:32:175:0.063:2	0/1:180,7:33:187:0.037:2
chr7	151962265	rs201834857	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:123,12:31:135:0.089:2	0/1:110,13:32:123:0.106:2	0/1:40,4:32:44:0.091:2	0/1:154,20:31:174:0.115:2	./.	0/1:165,8:30:173:0.046:2	0/1:131,25:32:156:0.160:2	0/1:147,12:32:159:0.075:2	0/1:135,16:32:151:0.106:2	0/1:155,10:32:165:0.061:2	0/1:165,7:31:172:0.041:2
chr7	151962269	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,10:29:127:0.079:2	./.	./.	./.	./.	0/1:151,15:29:166:0.090:2	./.	./.	./.	0/1:155,8:28:163:0.049:2	0/1:157,13:29:171:0.076:2
chr7	151962289	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:31:107:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	151962290	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,21:31:126:0.167:2	./.	0/1:121,10:29:131:0.076:2	./.	./.	./.	0/1:125,7:30:132:0.053:2	./.
chr7	151970797	rs141993954	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:51,5:32:56:0.089:2	0/1:185,15:33:200:0.075:2	0/1:174,20:32:194:0.103:2	./.	0/1:185,12:33:197:0.061:2	0/1:185,14:33:199:0.070:2	./.	./.	0/1:192,5:34:197:0.025:2
chr7	151970856	rs10454320	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,143:32:180:0.794:2	0/1:32,127:32:159:0.799:2	0/1:10,34:32:44:0.773:2	0/1:44,151:32:195:0.774:2	0/1:33,130:32:163:0.798:2	0/1:55,130:32:185:0.703:2	0/1:34,129:32:164:0.791:2	0/1:32,158:32:190:0.832:2	0/1:36,157:33:193:0.813:2	0/1:32,150:31:183:0.824:2	0/1:36,153:32:191:0.810:2
chr7	151970859	rs149992209	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:171,14:32:185:0.076:2	0/1:141,22:32:163:0.135:2	./.	0/1:188,7:33:196:0.036:2	./.	0/1:170,22:31:193:0.115:2	0/1:161,6:31:167:0.036:2	0/1:192,5:33:197:0.025:2	./.	0/1:150,39:32:189:0.206:2	0/1:173,21:32:194:0.108:2
chr7	151970877	rs138627563	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:179,7:32:186:0.038:2	0/1:135,16:32:151:0.106:2	0/1:41,3:32:44:0.068:2	./.	./.	0/1:177,14:31:191:0.073:2	0/1:157,18:32:175:0.103:2	0/1:189,9:30:198:0.045:2	0/1:191,6:34:197:0.030:2	./.	0/1:185,5:32:190:0.026:2
chr7	151970931	rs56850341	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,70:33:99:0.707:2	0/1:19,49:32:68:0.721:2	0/1:11,11:32:22:0.500:2	0/1:31,41:32:73:0.569:2	0/1:33,34:32:67:0.507:2	0/1:41,64:32:105:0.610:2	0/1:37,54:32:92:0.593:2	0/1:46,45:32:91:0.495:2	0/1:36,46:33:82:0.561:2	0/1:36,45:32:81:0.556:2	0/1:44,46:33:90:0.511:2
chr7	151970951	rs201009236	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,6:32:64:0.094:2	./.	0/1:63,9:32:72:0.125:2	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.
chr7	152008938	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,4:29:69:0.058:2	./.	./.	./.	./.	./.	./.
chr7	152143422	rs140765877	C	A,T	.	PASS	AC=1,1;AF=0.167,0.167;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/2:33:165:0.024:2	0/1:32:179:0.438:2	./.	./.	./.
chr7	152143425	rs144618510	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:33:175:0.023:2	./.	./.	./.	./.
chr7	152143509	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:141,5:31:146:0.034:2	0/1:114,4:32:118:0.034:2	./.	0/1:182,4:33:187:0.022:2	0/1:168,10:29:179:0.056:2	0/1:171,7:31:178:0.039:2	./.	./.	0/1:165,9:31:174:0.052:2	0/1:162,7:32:169:0.041:2	0/1:152,5:32:157:0.032:2
chr7	152143560	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:32:108:0.037:2	./.	./.
chr7	152143683	rs140460003	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,3:33:47:0.064:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	152143744	rs6953943	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:28,29:30:57:0.509:2	0/1:25,17:29:42:0.405:2	0/1:0,6:30:6:1.00:2	./.	0/1:45,41:29:87:0.477:2	0/1:35,35:29:70:0.500:2	./.	0/1:54,44:30:98:0.449:2	./.	0/1:29,20:29:49:0.408:2	0/1:56,23:28:79:0.291:2
chr7	152346007	rs3218536	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,28:31:71:0.394:2	./.	0/1:31,25:31:56:0.446:2	./.	./.	./.	0/1:27,18:31:46:0.400:2	0/1:39,56:31:95:0.589:2
chr7	152346284	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,4:33:27:0.148:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	152497656	rs201991209	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:30:51:0.078:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	152522195	rs200914813	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,10:31:88:0.114:2	0/1:67,14:31:81:0.173:2	./.	./.	0/1:87,22:30:110:0.202:2	0/1:56,12:31:68:0.176:2	0/1:57,21:30:78:0.269:2	0/1:84,8:32:92:0.087:2
chr7	154379517	rs35392762	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:92,83:32:175:0.474:2	./.	./.	./.	./.	./.	0/1:63,52:31:115:0.452:2
chr7	154379739	rs75213895	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,98:31:166:0.590:2	./.	./.	./.	./.	./.	0/1:38,34:31:72:0.472:2
chr7	154429560	rs11243339	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,49:33:95:0.516:2	0/1:46,21:32:67:0.313:2	0/1:0,10:32:10:1.00:2	0/1:62,44:32:106:0.415:2	./.	0/1:1,87:31:88:0.989:2	0/1:48,25:32:73:0.342:2	0/1:0,67:31:67:1.00:2	./.	0/1:0,68:32:68:1.00:2	0/1:0,104:32:104:1.00:2
chr7	154461112	rs3807218	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,89:33:90:0.989:2	0/1:0,55:33:55:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,81:33:81:1.00:2	0/1:0,123:33:123:1.00:2	0/1:0,153:34:154:1.00:2	0/1:0,86:33:86:1.00:2	0/1:0,113:33:113:1.00:2
chr7	154561188	rs56091483	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,42:31:89:0.472:2	./.	./.	./.
chr7	154561225	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,10:29:88:0.114:2	./.
chr7	154667628	rs2293353	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,19:29:44:0.432:2	0/1:14,16:29:30:0.533:2	./.	0/1:43,40:29:83:0.482:2	0/1:0,91:29:91:1.00:2	0/1:50,37:30:87:0.425:2	0/1:0,82:30:82:1.00:2	0/1:0,73:29:73:1.00:2	./.	./.	0/1:35,28:27:63:0.444:2
chr7	154667643	rs2230064	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,21:31:47:0.447:2	0/1:16,11:31:27:0.407:2	./.	0/1:48,42:30:90:0.467:2	0/1:69,42:30:111:0.378:2	./.	./.	0/1:0,85:30:85:1.00:2	./.	./.	0/1:37,33:29:70:0.471:2
chr7	154672646	rs3817522	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,13:30:13:1.00:2	0/1:65,49:27:114:0.430:2	./.	./.	./.	./.	0/1:46,57:30:103:0.553:2	0/1:47,23:28:70:0.329:2	0/1:56,31:27:87:0.356:2
chr7	154672662	rs3817521	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,35:31:92:0.380:2	./.	0/1:0,90:31:90:1.00:2	./.	0/1:56,31:32:87:0.356:2	./.	./.
chr7	154679447	rs940378	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:29:72:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,81:29:81:1.00:2	0/1:0,131:29:131:1.00:2	0/1:0,98:29:98:1.00:2	0/1:0,135:29:135:1.00:2	0/1:0,124:29:124:1.00:2	0/1:0,102:29:102:1.00:2	0/1:0,88:29:88:1.00:2	0/1:0,91:30:91:1.00:2
chr7	154681050	rs1129300	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,41:32:108:0.380:2	./.	0/1:1,149:33:150:0.993:2	./.	0/1:37,30:34:67:0.448:2	./.	./.
chr7	154681161	rs74997689	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:19:11:0.364:2	./.	./.
chr7	154681166	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,4:24:22:0.182:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	154681216	rs1129301	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,30:32:59:0.508:2	./.	0/1:0,66:32:67:1.00:2	./.	0/1:43,28:33:71:0.394:2	./.	./.
chr7	154684153	rs3734960	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:30:6:0.667:2	0/1:66,62:29:128:0.484:2	0/1:73,55:29:128:0.430:2	./.	0/1:2,108:29:110:0.982:2	./.	0/1:83,73:30:156:0.468:2	0/1:44,56:29:100:0.560:2	0/1:1,89:28:91:0.989:2
chr7	154738409	rs3501	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:29:50:1.00:2	0/1:0,25:29:25:1.00:2	0/1:10,4:31:14:0.286:2	0/1:1,53:29:54:0.981:2	./.	0/1:0,72:30:72:1.00:2	./.	./.	./.	0/1:0,68:30:68:1.00:2	0/1:2,49:29:52:0.961:2
chr7	154760369	rs935037	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:27:60:1.00:2	0/1:0,34:27:34:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,64:28:64:1.00:2	0/1:54,30:26:84:0.357:2	0/1:0,57:28:57:1.00:2	0/1:32,21:28:53:0.396:2	0/1:42,43:28:85:0.506:2	0/1:41,29:28:71:0.414:2	0/1:0,43:27:43:1.00:2	0/1:0,36:26:36:1.00:2
chr7	154760666	rs61752011	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,32:32:32:1.00:2	0/1:9,5:31:14:0.357:2	0/1:0,66:32:66:1.00:2	./.	0/1:1,80:32:81:0.988:2	./.	./.	./.	0/1:0,48:32:49:1.00:2	0/1:0,81:32:81:1.00:2
chr7	154760785	rs1058834	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,40:30:88:0.455:2	./.	./.	./.	./.	./.
chr7	154862621	rs6320	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,12:33:12:1.00:2	./.	0/1:0,25:30:25:1.00:2	./.	0/1:1,5:32:6:0.833:2	0/1:4,7:30:11:0.636:2	./.	0/1:2,7:33:9:0.778:2
chr7	154862652	rs11575874	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,17:31:29:0.586:2	./.	0/1:28,22:32:50:0.440:2	./.	./.	0/1:14,15:32:29:0.517:2	./.	0/1:9,14:30:23:0.609:2
chr7	154989037	rs140585474	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,65:32:170:0.382:2
chr7	154989054	rs2317164	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:69,58:32:127:0.457:2	0/1:39,20:31:59:0.339:2	./.	./.	0/1:61,50:31:112:0.450:2	./.	./.	0/1:81,57:32:138:0.413:2	./.	./.	./.
chr7	154989982	rs28664023	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,42:32:62:0.677:2	0/1:28,24:32:52:0.462:2	0/1:8,4:32:12:0.333:2	0/1:47,47:31:94:0.500:2	0/1:47,56:32:103:0.544:2	0/1:69,41:32:110:0.373:2	0/1:1,105:31:106:0.991:2	0/1:58,66:32:124:0.532:2	0/1:75,41:33:116:0.353:2	./.	./.
chr7	154990003	rs12532373	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:45,20:31:65:0.308:2	0/1:26,22:31:48:0.458:2	./.	./.	0/1:62,43:32:105:0.410:2	./.	./.	0/1:72,51:32:123:0.415:2	./.	./.	./.
chr7	155150443	rs3923205	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:30:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	155150472	rs3922604	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:30:32:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,38:30:40:1.00:2	0/1:0,61:31:61:1.00:2	0/1:1,75:30:76:0.987:2	0/1:0,48:31:48:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,56:31:56:1.00:2
chr7	155150560	rs6605563	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,20:33:22:0.909:2	0/1:0,13:31:13:1.00:2	0/1:0,2:34:2:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,24:33:24:1.00:2	0/1:1,30:33:31:0.968:2	0/1:0,28:33:28:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,25:32:25:1.00:2
chr7	155150602	rs6605562	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:31:18:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,2:32:2:1.00:2	0/1:1,23:32:24:0.958:2	0/1:0,12:32:12:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,20:33:20:1.00:2	0/1:1,23:31:24:0.958:2	0/1:0,22:32:22:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,18:31:18:1.00:2
chr7	155150765	rs7456618	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,38:33:72:0.528:2	0/1:23,20:32:43:0.465:2	0/1:5,6:32:11:0.545:2	0/1:47,34:33:81:0.420:2	./.	0/1:39,27:32:66:0.409:2	0/1:2,71:33:73:0.973:2	0/1:49,43:33:92:0.467:2	./.	0/1:57,24:31:81:0.296:2	./.
chr7	155150870	rs67400545	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:50,41:29:91:0.451:2	0/1:37,26:29:63:0.413:2	./.	0/1:75,54:29:129:0.419:2	0/1:5,119:29:124:0.960:2	0/1:87,80:29:167:0.479:2	./.	0/1:96,77:29:173:0.445:2	0/1:0,129:30:129:1.00:2	0/1:45,44:29:89:0.494:2	0/1:0,104:28:104:1.00:2
chr7	155150997	rs74831360	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,17:32:47:0.362:2	./.	./.
chr7	155151018	rs12719963	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,47:32:48:0.979:2	0/1:0,19:31:19:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,44:31:44:1.00:2	0/1:1,41:31:42:0.976:2	0/1:0,39:31:39:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,37:32:37:1.00:2
chr7	155151060	rs77846830	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,13:31:34:0.382:2	0/1:12,12:29:24:0.500:2	./.	0/1:19,13:31:32:0.406:2	0/1:0,31:29:31:1.00:2	0/1:16,27:30:43:0.628:2	./.	0/1:20,12:30:32:0.375:2	0/1:10,15:31:25:0.600:2	0/1:8,9:32:17:0.529:2	0/1:0,22:28:22:1.00:2
chr7	155151095	rs12719962	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,47:30:48:0.979:2	0/1:0,41:30:41:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,77:30:77:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,60:29:60:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,23:29:23:1.00:2
chr7	155151194	rs12719961	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,40:32:77:0.519:2	0/1:28,19:31:48:0.404:2	0/1:9,18:31:27:0.667:2	0/1:78,71:30:149:0.477:2	0/1:143,5:32:148:0.034:2	0/1:54,63:31:118:0.538:2	0/1:0,106:31:108:1.00:2	0/1:68,70:32:140:0.507:2	./.	0/1:31,53:31:84:0.631:2	./.
chr7	155151262	rs79817946	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,37:31:81:0.457:2	./.	./.
chr7	155151287	rs79289325	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,30:31:65:0.462:2	./.	./.
chr7	155151307	rs13308700	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,43:29:44:0.977:2	0/1:1,21:29:22:0.955:2	0/1:0,12:30:12:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,34:30:34:1.00:2	0/1:1,55:30:56:0.982:2	0/1:0,58:30:58:1.00:2	0/1:0,48:31:49:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,27:30:27:1.00:2
chr7	155151367	rs13310748	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,9:31:10:0.900:2	0/1:1,6:28:7:0.857:2	0/1:0,7:30:7:1.00:2	0/1:0,13:28:13:1.00:2	0/1:0,24:29:24:1.00:2	0/1:0,15:28:15:1.00:2	0/1:2,19:29:21:0.905:2	0/1:0,26:29:26:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,11:25:11:1.00:2	0/1:0,12:30:12:1.00:2
chr7	155151369	rs13309563	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,9:31:10:0.900:2	0/1:1,6:32:7:0.857:2	0/1:0,7:30:7:1.00:2	0/1:0,13:28:13:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,15:31:15:1.00:2	0/1:1,20:29:21:0.952:2	0/1:0,26:30:26:1.00:2	0/1:1,29:31:30:0.967:2	0/1:1,10:30:11:0.909:2	0/1:0,12:29:12:1.00:2
chr7	155151433	rs10250091	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:30:18:1.00:2	0/1:1,3:32:4:0.750:2	0/1:0,3:32:3:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,9:31:9:1.00:2	0/1:1,6:31:7:0.857:2	0/1:0,12:32:12:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,9:29:9:1.00:2
chr7	155151437	rs10233765	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:27:19:1.00:2	0/1:1,3:31:4:0.750:2	0/1:0,3:30:3:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,5:28:5:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,9:30:9:1.00:2
chr7	155255332	rs2361689	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:33:10:0.400:2	./.	./.	0/1:31,20:31:51:0.392:2	./.	0/1:0,60:33:60:1.00:2	0/1:22,24:33:46:0.522:2	./.	./.
chr7	155471362	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,5:26:159:0.031:2	./.	./.	./.
chr7	155503920	rs7800753	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,12:30:12:1.00:2	0/1:0,3:31:3:1.00:2	./.	0/1:10,24:28:36:0.706:2	0/1:0,13:28:13:1.00:2	0/1:0,20:28:20:1.00:2	./.	0/1:8,4:28:12:0.333:2	0/1:0,26:29:26:1.00:2	0/1:0,7:28:7:1.00:2	0/1:6,7:25:15:0.538:2
chr7	155530954	rs2178428	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,45:31:100:0.450:2	./.	./.	0/1:2,122:33:124:0.984:2	./.	./.	./.	0/1:47,47:32:94:0.500:2
chr7	155531080	rs3735576	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,26:31:41:0.634:2	./.	./.	0/1:2,57:30:59:0.966:2	./.	./.	./.	0/1:24,22:31:46:0.478:2
chr7	155532600	rs200834081	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,45:32:106:0.425:2	./.	./.
chr7	155532684	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:33:129:0.031:2	./.	./.	./.
chr7	155532686	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:123,4:32:127:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr7	155534653	rs73167165	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,48:30:97:0.495:2	./.	./.	./.	./.
chr7	155534687	rs139706552	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,22:30:67:0.328:2	./.	./.	./.	./.	./.	./.	./.
chr7	155599183	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.	./.	./.
chr7	155604729	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,28:10:123:0.228:2	0/1:92,33:9:125:0.264:2	0/1:94,26:9:120:0.217:2	./.	./.	./.	./.	./.
chr7	155755826	rs2007015	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,5:30:21:0.238:2	0/1:7,8:30:15:0.533:2	./.	0/1:0,17:28:17:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,21:29:21:1.00:2	0/1:9,13:29:22:0.591:2	0/1:0,21:28:21:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,23:28:23:1.00:2	0/1:0,24:29:24:1.00:2
chr7	155757502	rs1551630	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:32:87:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,136:31:136:1.00:2	0/1:0,128:31:128:1.00:2	0/1:0,145:32:145:1.00:2	0/1:0,153:32:153:1.00:2	0/1:0,134:32:134:1.00:2	0/1:0,109:32:110:1.00:2	0/1:0,93:31:93:1.00:2	0/1:0,96:31:96:1.00:2
chr7	156469123	rs2302148	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,49:32:94:0.527:2	./.	./.	./.	./.	./.
chr7	156469133	rs2302147	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:33:3:1.00:2	./.	0/1:32,22:32:54:0.407:2	./.	./.	./.	0/1:27,20:33:47:0.426:2	./.	0/1:18,20:30:38:0.526:2
chr7	156469179	rs2302146	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	0/1:33,33:31:66:0.500:2	./.	./.	./.	0/1:23,25:31:48:0.521:2	./.	0/1:23,17:29:40:0.425:2
chr7	156469190	rs2302145	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:28:4:1.00:2	./.	0/1:48,42:29:90:0.467:2	0/1:35,39:29:74:0.527:2	./.	./.	0/1:28,29:28:57:0.509:2	./.	0/1:27,21:26:48:0.438:2
chr7	156518192	rs60299355	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,31:30:62:0.500:2	./.	./.	./.	./.	./.
chr7	156518195	rs59912051	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,23:29:57:0.404:2	0/1:30,31:31:61:0.508:2	./.	./.	./.	./.	./.
chr7	156554830	rs6957768	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,51:33:103:0.495:2	./.	./.	./.	./.	./.
chr7	156589149	rs112583005	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,21:33:49:0.429:2	./.	./.	./.	./.	./.	./.
chr7	156742965	rs61734937	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,9:32:19:0.474:2	./.	./.	./.	./.	0/1:11,7:32:18:0.389:2	./.	./.
chr7	156743124	rs75055744	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,7:22:52:0.135:2	0/1:53,7:22:60:0.117:2	./.	./.	./.
chr7	156743264	rs61747373	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,25:32:53:0.472:2	./.	0/1:41,4:29:45:0.089:2	./.	./.	0/1:22,17:33:39:0.436:2	./.	./.
chr7	156746890	rs61740447	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,90:32:168:0.536:2	./.	./.	./.	./.	./.	./.
chr7	156755831	rs138677884	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,20:30:38:0.526:2
chr7	156761818	rs2302445	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,52:32:52:1.00:2	0/1:0,20:32:20:1.00:2	./.	./.	0/1:21,18:32:39:0.462:2	0/1:0,35:31:35:1.00:2	0/1:0,17:32:17:1.00:2	0/1:34,25:32:59:0.424:2	0/1:39,24:32:63:0.381:2	0/1:20,13:32:33:0.394:2	0/1:51,29:32:80:0.363:2
chr7	156762224	rs2302443	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:32:8:1.00:2	0/1:0,8:31:8:1.00:2	./.	./.	0/1:13,6:32:19:0.316:2	0/1:0,15:32:15:1.00:2	0/1:0,8:31:8:1.00:2	0/1:7,7:31:14:0.500:2	0/1:20,13:34:33:0.394:2	0/1:10,7:33:17:0.412:2	0/1:11,13:32:24:0.542:2
chr7	156762248	rs12919	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:30:10:1.00:2	0/1:0,11:31:11:1.00:2	./.	./.	0/1:12,7:31:19:0.368:2	0/1:0,19:31:19:1.00:2	0/1:0,17:31:17:1.00:2	0/1:9,9:30:18:0.500:2	0/1:18,17:32:35:0.486:2	0/1:9,11:32:20:0.550:2	0/1:10,16:31:26:0.615:2
chr7	156803045	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,17:30:30:0.567:2	./.	./.	./.	./.
chr7	156967666	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:32:50:0.080:2	./.	./.	./.	./.	./.
chr7	156967670	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:26:46:0.087:2	./.
chr7	156974354	rs17646047	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,31:33:53:0.585:2	./.	./.	0/1:33,20:32:53:0.377:2	./.	./.	./.	./.
chr7	157000176	rs2301914	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,51:32:109:0.468:2	0/1:35,26:32:61:0.426:2	0/1:8,4:32:12:0.333:2	0/1:0,140:32:140:1.00:2	0/1:42,38:32:80:0.475:2	0/1:55,45:31:100:0.450:2	0/1:55,48:32:103:0.466:2	./.	0/1:1,134:33:135:0.993:2	./.	./.
chr7	157046707	rs150266636	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,31:32:61:0.508:2
chr7	157388012	rs73163814	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,18:29:55:0.327:2	0/1:23,8:29:31:0.258:2	./.	./.	./.	0/1:24,21:30:45:0.467:2	0/1:52,40:29:92:0.435:2	./.	./.	./.	./.
chr7	157396697	rs17853260	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,134:30:134:1.00:2	./.	0/1:72,75:30:147:0.510:2	0/1:117,78:30:195:0.400:2	0/1:93,84:30:177:0.475:2	0/1:78,43:31:121:0.355:2	0/1:50,38:31:88:0.432:2	0/1:2,96:31:98:0.980:2
chr7	157408146	rs114374899	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,38:30:100:0.380:2	0/1:51,55:31:106:0.519:2	./.	./.	./.	./.
chr7	157408290	rs73744812	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,22:29:40:0.550:2	0/1:10,14:30:24:0.583:2	./.	./.	./.	./.
chr7	157414064	rs1130502	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,15:33:30:0.500:2	0/1:16,4:33:20:0.200:2	0/1:4,7:32:11:0.636:2	0/1:27,12:32:39:0.308:2	./.	0/1:0,29:32:29:1.00:2	0/1:4,49:32:53:0.925:2	./.	0/1:25,24:33:49:0.490:2	0/1:0,26:32:26:1.00:2	0/1:1,26:32:27:0.963:2
chr7	157449067	rs17853262	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:147,4:32:151:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr7	157691371	rs117087228	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,19:30:33:0.576:2	./.	./.	./.	./.	./.	./.
chr7	157903538	rs1130501	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,18:30:18:1.00:2	0/1:0,5:30:5:1.00:2	./.	./.	0/1:1,5:30:6:0.833:2	0/1:12,8:32:20:0.400:2	0/1:20,13:30:33:0.394:2	0/1:6,24:30:30:0.800:2	./.	0/1:18,4:31:22:0.182:2	./.
chr7	157929368	rs145973702	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,30:32:84:0.357:2	./.	./.	./.
chr7	157931119	rs1130500	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,33:30:73:0.465:2	./.	./.	0/1:33,27:29:60:0.450:2	./.	0/1:0,36:31:36:1.00:2	./.	./.
chr7	157931144	rs1130499	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,28:31:61:0.459:2	./.	./.	0/1:25,24:32:49:0.490:2	./.	0/1:0,27:32:27:1.00:2	./.	./.
chr7	157959636	rs1130498	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:19,18:31:37:0.486:2	0/1:15,3:32:18:0.167:2	0/1:7,5:30:12:0.417:2	./.	0/1:20,15:30:35:0.429:2	0/1:0,34:30:34:1.00:2	0/1:19,10:30:29:0.345:2	0/1:23,29:31:52:0.558:2	0/1:17,8:28:25:0.320:2	0/1:0,28:29:28:1.00:2	0/1:0,32:31:32:1.00:2
chr7	157959879	rs1130497	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,15:31:18:0.833:2	0/1:9,4:29:13:0.308:2	./.	./.	0/1:13,18:30:31:0.581:2	0/1:8,12:31:20:0.600:2	0/1:7,6:31:13:0.462:2	0/1:10,22:31:32:0.688:2	0/1:9,13:32:22:0.591:2	0/1:17,14:31:31:0.452:2	./.
chr7	157959888	rs73745197	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:30:6:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr7	157959895	rs1130496	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,13:31:21:0.619:2	0/1:5,4:29:9:0.444:2	./.	./.	0/1:8,14:31:22:0.636:2	0/1:6,9:32:15:0.600:2	0/1:8,3:31:11:0.273:2	0/1:6,20:29:26:0.769:2	0/1:7,8:31:15:0.533:2	0/1:11,10:29:21:0.476:2	./.
chr7	157959911	rs1130495	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,10:29:18:0.556:2	./.	./.	0/1:11,6:33:17:0.353:2	0/1:9,15:33:24:0.625:2	0/1:0,16:33:16:1.00:2	0/1:0,15:31:15:1.00:2	0/1:5,18:32:23:0.783:2	0/1:0,12:30:12:1.00:2	0/1:0,18:29:18:1.00:2	./.
chr7	157985149	rs3800855	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,10:32:21:0.476:2	0/1:7,6:30:13:0.462:2	./.	./.	./.	0/1:15,22:32:37:0.595:2	./.	./.	./.	./.	0/1:5,4:32:9:0.444:2
chr7	157997904	rs374426916	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,30:32:79:0.380:2	./.
chr7	158325503	rs4909237	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,39:32:97:0.402:2	./.	0/1:39,55:32:94:0.585:2	0/1:89,51:33:140:0.364:2	./.	0/1:42,25:33:67:0.373:2	0/1:42,29:33:71:0.408:2	0/1:3,72:33:75:0.960:2
chr7	158424351	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,4:32:60:0.067:2	./.	./.	./.	./.	./.	./.
chr7	158486018	rs61763006	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,13:31:42:0.310:2	./.	./.	./.
chr7	158526880	rs3750051	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,9:29:12:0.818:2	./.	./.	./.	./.	./.	./.	0/1:23,24:30:47:0.511:2	0/1:46,45:30:92:0.495:2
chr7	158528233	rs3816462	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:25,20:29:45:0.444:2	0/1:20,11:28:31:0.355:2	0/1:0,5:31:5:1.00:2	./.	0/1:37,19:28:56:0.339:2	./.	0/1:56,13:30:69:0.188:2	0/1:46,20:30:66:0.303:2	./.	0/1:35,35:30:70:0.500:2	0/1:34,24:29:58:0.414:2
chr7	158528254	rs34974906	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,41:32:41:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,4:32:4:1.00:2	./.	0/1:45,12:31:57:0.211:2	./.	0/1:59,14:31:73:0.192:2	0/1:45,24:32:69:0.348:2	./.	./.	./.
chr7	158528269	rs35914882	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,30:32:30:1.00:2	0/1:0,19:32:19:1.00:2	0/1:1,3:32:4:0.750:2	./.	0/1:42,8:30:50:0.160:2	./.	0/1:58,12:33:70:0.171:2	0/1:42,22:32:64:0.344:2	./.	./.	./.
chr7	158534315	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,7:28:37:0.189:2	./.	./.	./.
chr7	158534372	rs57686648	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:19,28:31:47:0.596:2	0/1:10,11:31:21:0.524:2	0/1:0,3:32:3:1.00:2	./.	0/1:21,24:32:45:0.533:2	./.	0/1:9,19:31:28:0.679:2	0/1:13,17:32:30:0.567:2	./.	0/1:17,21:30:38:0.553:2	0/1:25,24:32:49:0.490:2
chr7	158534381	rs59980573	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:25,30:30:55:0.545:2	0/1:17,18:32:35:0.514:2	0/1:0,6:29:6:1.00:2	./.	0/1:25,27:31:52:0.519:2	./.	0/1:16,20:30:36:0.556:2	0/1:18,17:32:35:0.486:2	./.	0/1:24,26:30:50:0.520:2	0/1:30,31:30:61:0.508:2
chr7	158536267	rs2305473	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:45,39:29:84:0.464:2	0/1:32,27:30:59:0.458:2	0/1:2,16:31:18:0.889:2	./.	0/1:69,51:29:120:0.425:2	./.	0/1:111,71:30:182:0.390:2	0/1:84,74:29:158:0.468:2	./.	0/1:40,43:30:83:0.518:2	0/1:63,47:30:110:0.427:2
chr7	158536334	rs2305474	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,16:31:45:0.356:2	0/1:30,20:31:50:0.400:2
chr7	158536345	rs2305475	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:23,17:32:40:0.425:2	0/1:18,12:32:30:0.400:2	0/1:0,4:32:4:1.00:2	./.	0/1:34,13:31:47:0.277:2	./.	0/1:58,21:32:79:0.266:2	0/1:37,24:33:61:0.393:2	./.	0/1:26,11:33:37:0.297:2	0/1:25,13:32:38:0.342:2
chr7	158536376	rs2305476	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:23,6:30:29:0.207:2	0/1:16,4:32:20:0.200:2	0/1:0,3:33:3:1.00:2	./.	0/1:27,3:31:30:0.100:2	./.	0/1:38,7:32:45:0.156:2	0/1:31,6:32:37:0.162:2	./.	0/1:19,6:32:25:0.240:2	./.
chr7	158536388	rs2305477	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,3:33:23:0.130:2	0/1:12,4:31:16:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr7	158590740	rs13233513	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:21,20:32:41:0.488:2	0/1:10,11:31:21:0.524:2	./.	./.	0/1:13,13:31:26:0.500:2	./.	0/1:19,15:30:35:0.441:2	0/1:17,19:30:36:0.528:2	./.	./.	./.
chr7	158662182	rs842695	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:15,16:32:31:0.516:2	0/1:7,8:31:15:0.533:2	./.	./.	0/1:27,4:32:31:0.129:2	./.	0/1:0,21:32:21:1.00:2	0/1:22,18:32:40:0.450:2	./.	./.	0/1:24,16:33:41:0.400:2
chr7	158672476	rs2709859	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:33:70:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,83:33:83:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,80:33:80:1.00:2
chr7	158672515	rs150548113	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,15:31:32:0.484:2	./.	./.	./.	./.
chr7	158672619	rs2788478	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:47,39:30:86:0.453:2	0/1:15,17:30:32:0.531:2	0/1:0,6:30:6:1.00:2	./.	0/1:34,34:29:68:0.500:2	0/1:33,47:30:80:0.588:2	0/1:2,73:29:75:0.973:2	0/1:44,50:29:94:0.532:2	0/1:56,49:30:105:0.467:2	0/1:39,46:30:85:0.541:2	0/1:0,119:29:119:1.00:2
chr7	158679717	rs139730326	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,59:32:125:0.472:2	./.	./.
chr7	158715219	rs2730238	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:68,55:33:123:0.447:2	0/1:36,42:32:78:0.538:2	0/1:0,10:34:10:1.00:2	0/1:1,132:33:133:0.992:2	0/1:79,66:32:145:0.455:2	0/1:0,143:32:143:1.00:2	0/1:88,88:33:176:0.500:2	0/1:75,75:33:150:0.500:2	0/1:0,132:33:132:1.00:2	0/1:0,124:32:124:1.00:2	0/1:65,58:33:123:0.472:2
chr7	158719084	rs2244789	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:79,50:32:129:0.388:2	0/1:33,33:32:66:0.500:2	0/1:0,16:31:16:1.00:2	0/1:0,88:31:88:1.00:2	0/1:24,28:32:52:0.538:2	0/1:0,99:31:99:1.00:2	0/1:43,34:31:77:0.442:2	0/1:30,47:31:77:0.610:2	0/1:2,74:32:76:0.974:2	0/1:0,69:31:69:1.00:2	0/1:81,40:31:121:0.331:2
chr7	158734813	rs34634437	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,19:30:39:0.487:2	0/1:31,19:31:50:0.380:2	./.	./.	./.	./.
chr7	158738312	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,6:26:61:0.098:2	./.	./.	./.	./.	./.
chr7	158827326	rs2071624	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,6:32:11:0.545:2	0/1:52,41:31:93:0.441:2	0/1:56,28:30:85:0.333:2	./.	0/1:47,38:31:86:0.447:2	./.	./.	0/1:34,51:31:85:0.600:2	./.
chr7	158851234	rs2098349	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,45:33:45:1.00:2	0/1:0,43:32:43:1.00:2	./.	0/1:1,51:33:52:0.981:2	0/1:0,33:31:33:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,38:33:38:1.00:2	0/1:35,19:33:54:0.352:2
chr7	158851957	rs184618998	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,8:31:16:0.500:2	./.
chr7	158896517	rs2270313	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:42,35:32:77:0.455:2	0/1:28,16:32:44:0.364:2	./.	./.	0/1:65,48:31:113:0.425:2	0/1:60,67:31:127:0.528:2	0/1:65,55:31:120:0.458:2	0/1:0,137:31:137:1.00:2	./.	0/1:55,41:32:96:0.427:2	./.
chr7	158902567	rs3750071	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,21:30:47:0.447:2	0/1:22,3:33:25:0.120:2	./.	./.	./.	0/1:27,21:31:48:0.438:2	0/1:43,35:31:78:0.449:2	./.	./.	0/1:26,31:31:57:0.544:2	./.
chr7	158937276	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.
chr8	192991	rs116019502	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,26:30:48:0.542:2	./.	./.	./.	./.	./.
chr8	194682	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,62:33:138:0.449:2	./.
chr8	195254	rs2074718	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,28:32:72:0.389:2	./.	./.	0/1:62,25:33:87:0.287:2	0/1:81,54:32:135:0.400:2
chr8	195879	rs116191154	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,35:31:79:0.443:2	./.	./.	./.	./.	./.
chr8	196021	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:33:66:0.061:2	./.	./.
chr8	196121	rs117305688	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,18:30:45:0.400:2	./.	./.	./.	./.	./.	./.
chr8	196274	rs2072174	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,8:31:25:0.320:2	./.	./.	./.
chr8	363192	rs10090550	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,48:32:127:0.378:2	0/1:79,50:31:129:0.388:2	0/1:0,89:31:89:1.00:2	0/1:3,107:31:110:0.973:2	./.	./.	./.	0/1:72,45:32:117:0.385:2
chr8	381344	rs28438773	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,10:32:27:0.370:2	./.	./.	0/1:28,21:32:49:0.429:2	./.	./.	./.
chr8	382957	rs6998464	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:172,4:32:176:0.023:2	./.	./.	0/1:86,93:30:179:0.520:2	0/1:56,38:29:94:0.404:2	0/1:90,70:29:160:0.438:2	0/1:0,79:30:79:1.00:2	0/1:106,74:30:180:0.411:2	0/1:108,90:31:198:0.455:2	./.	0/1:110,85:31:195:0.436:2
chr8	385684	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:175,12:33:187:0.064:2	0/1:164,10:33:174:0.057:2	./.	./.	0/1:185,8:33:195:0.041:2	0/1:185,15:33:200:0.075:2	./.	./.	./.	./.	./.
chr8	385685	rs199702170	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,8:32:189:0.042:2	./.	./.	./.	./.
chr8	618647	rs1703879	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,52:34:109:0.477:2	./.	./.	./.	./.
chr8	618728	rs2271263	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,28:31:29:0.966:2	0/1:0,17:29:17:1.00:2	0/1:1,6:31:7:0.857:2	0/1:0,50:31:50:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,32:30:32:1.00:2	0/1:31,29:31:60:0.483:2	0/1:0,55:31:55:1.00:2	0/1:1,47:31:48:0.979:2	0/1:35,15:31:50:0.300:2	0/1:0,36:29:36:1.00:2
chr8	623593	rs55783038	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,37:30:56:0.661:2	0/1:11,14:31:25:0.560:2	./.	0/1:31,44:30:75:0.587:2	0/1:46,41:29:87:0.471:2	0/1:49,37:30:86:0.430:2	./.	0/1:0,70:31:70:1.00:2	./.	./.	0/1:33,15:29:49:0.313:2
chr8	623696	rs61741834	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:29:3:1.00:2	./.	./.	./.	./.	./.	./.	0/1:34,28:30:62:0.452:2	./.
chr8	623906	rs118014343	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,15:31:39:0.385:2	0/1:12,6:32:18:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	1513989	rs116119098	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,33:30:64:0.516:2	./.	./.	./.	./.
chr8	1514009	rs2301963	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,10:32:28:0.357:2	0/1:7,8:31:15:0.533:2	0/1:6,4:31:10:0.400:2	0/1:0,64:31:64:1.00:2	0/1:26,27:31:53:0.509:2	0/1:0,46:31:46:1.00:2	0/1:31,27:31:58:0.466:2	0/1:29,16:32:45:0.356:2	0/1:25,13:31:38:0.342:2	0/1:0,44:31:44:1.00:2	./.
chr8	1616640	rs4565482	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:17,26:31:43:0.605:2	0/1:8,20:31:28:0.714:2	0/1:5,4:32:9:0.444:2	./.	./.	./.	./.	./.	./.	0/1:17,17:30:34:0.500:2	./.
chr8	1616718	rs2235112	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:19,18:32:37:0.486:2	0/1:20,18:32:38:0.474:2	./.	0/1:0,51:31:51:1.00:2	./.	./.	0/1:1,17:31:18:0.944:2	./.	0/1:35,17:33:52:0.327:2	0/1:22,22:32:44:0.500:2	0/1:10,10:31:20:0.500:2
chr8	1765425	rs61388742	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,23:31:57:0.404:2	0/1:23,28:32:51:0.549:2	./.	0/1:40,15:31:55:0.273:2	./.	0/1:27,18:32:45:0.400:2	0/1:20,11:29:31:0.355:2
chr8	1806229	rs4875950	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:21,25:31:46:0.543:2	0/1:15,15:31:30:0.500:2	./.	0/1:27,41:32:68:0.603:2	./.	0/1:37,44:30:81:0.543:2	./.	0/1:37,26:31:63:0.413:2	0/1:0,73:33:73:1.00:2	0/1:25,24:32:49:0.490:2	0/1:31,39:29:70:0.557:2
chr8	1808106	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:32:84:0.048:2	./.	./.	./.
chr8	1808256	rs749822	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,31:31:102:0.307:2	./.	./.	./.	./.
chr8	1817349	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:33:159:0.025:2	./.	./.
chr8	1817367	rs7003969	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,12:31:29:0.414:2	./.	0/1:32,22:33:54:0.407:2	./.	./.	./.	./.
chr8	1833801	rs9657362	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:11,9:35:20:0.450:2	0/1:7,4:32:11:0.364:2	./.	0/1:7,18:33:25:0.720:2	./.	./.	0/1:11,7:30:18:0.389:2	0/1:16,8:32:24:0.333:2	0/1:13,14:33:27:0.519:2	0/1:19,7:30:26:0.269:2	./.
chr8	1853882	rs184791801	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,20:32:30:0.667:2	./.	./.	./.	./.	./.	./.
chr8	1857548	rs2294038	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:39,15:29:54:0.278:2	0/1:23,17:28:40:0.425:2	0/1:7,3:28:10:0.300:2	./.	0/1:47,25:26:72:0.347:2	./.	./.	./.	0/1:35,35:28:70:0.500:2	./.	./.
chr8	1873540	rs2272613	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,36:32:68:0.529:2
chr8	1876631	rs2272611	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,43:32:67:0.642:2	./.	./.	0/1:46,53:32:99:0.535:2	./.	./.	./.	./.
chr8	1876707	rs61752020	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,33:31:74:0.446:2	./.	./.	./.	./.
chr8	1877480	rs17683288	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,72:28:136:0.529:2	./.	./.	./.
chr8	1877564	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:145,4:31:149:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr8	1900911	rs2272608	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,46:30:95:0.484:2	./.	./.	0/1:35,42:30:77:0.545:2	./.	./.	./.	./.
chr8	1905132	rs3735876	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:53,34:31:87:0.391:2	0/1:28,12:32:40:0.300:2	./.	./.	0/1:55,61:31:116:0.526:2	0/1:78,47:31:125:0.376:2	0/1:1,135:31:137:0.993:2	./.	0/1:1,98:32:99:0.990:2	./.	0/1:66,59:32:125:0.472:2
chr8	1951766	rs74359409	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,19:32:38:0.500:2	./.	0/1:29,20:31:49:0.408:2	0/1:44,37:32:81:0.457:2	./.	./.	0/1:60,44:32:104:0.423:2
chr8	1951854	rs73184755	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,11:31:20:0.550:2	./.	0/1:20,11:31:31:0.355:2	0/1:12,16:31:28:0.571:2	./.	./.	0/1:21,17:31:38:0.447:2
chr8	1952175	rs7386994	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,18:33:37:0.486:2	./.	0/1:24,15:32:39:0.385:2	0/1:30,19:33:49:0.388:2	./.	./.	0/1:30,35:32:65:0.538:2
chr8	1952490	rs73184756	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,19:29:45:0.422:2	./.	0/1:20,20:30:40:0.500:2	0/1:19,15:31:34:0.441:2	./.	./.	0/1:22,18:31:40:0.450:2
chr8	1952580	rs62478227	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,33:32:52:0.635:2	0/1:10,4:32:14:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	1952818	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:33:160:0.025:2	./.	./.	./.	./.	./.
chr8	1952927	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,34:33:106:0.321:2	./.
chr8	1953042	rs1043221	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,11:29:23:0.478:2	./.	0/1:12,12:28:24:0.500:2	0/1:21,13:28:34:0.382:2	./.	./.	0/1:16,16:29:32:0.500:2
chr8	1953180	rs3779715	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,65:33:115:0.565:2	0/1:15,36:33:51:0.706:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	1953194	rs3087819	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,100:32:100:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,82:33:82:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,50:30:50:1.00:2	0/1:57,37:32:94:0.394:2	0/1:0,117:33:117:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,95:33:95:1.00:2
chr8	1953223	rs1043223	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,37:31:88:0.420:2	0/1:37,12:32:49:0.245:2	0/1:0,9:32:9:1.00:2	0/1:1,68:31:69:0.986:2	0/1:12,14:29:26:0.538:2	0/1:52,33:30:85:0.388:2	0/1:17,21:30:38:0.553:2	./.	0/1:57,44:32:101:0.436:2	0/1:0,58:31:58:1.00:2	0/1:42,40:31:83:0.488:2
chr8	1953567	rs1043225	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:33:75:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,113:32:113:1.00:2	0/1:47,26:32:73:0.356:2	0/1:0,75:32:75:1.00:2	0/1:62,32:31:94:0.340:2	./.	0/1:0,97:33:97:1.00:2	0/1:0,101:32:101:1.00:2	0/1:81,41:33:122:0.336:2
chr8	1953759	rs1043226	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:32:26:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,29:32:29:1.00:2	0/1:18,8:31:26:0.308:2	0/1:1,26:30:27:0.963:2	0/1:15,14:30:29:0.483:2	./.	0/1:0,35:31:35:1.00:2	0/1:0,31:32:31:1.00:2	0/1:25,14:32:39:0.359:2
chr8	1953880	rs73184758	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,26:31:40:0.650:2	./.	0/1:13,17:32:30:0.567:2	0/1:23,30:33:53:0.566:2	./.	./.	0/1:24,39:32:63:0.619:2
chr8	1954237	rs7460119	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:33:92:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,63:32:63:1.00:2	0/1:75,62:32:137:0.453:2	0/1:1,101:33:102:0.990:2	0/1:0,85:33:85:1.00:2	0/1:0,119:33:119:1.00:2
chr8	1954587	rs4288423	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,18:32:18:1.00:2	0/1:0,6:31:6:1.00:2	./.	0/1:0,11:31:11:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,11:32:11:1.00:2	0/1:6,7:31:13:0.538:2	0/1:0,18:32:18:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,20:32:20:1.00:2
chr8	1954812	rs1043228	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,21:31:39:0.538:2	0/1:17,9:33:26:0.346:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	2005883	rs17064618	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,27:31:47:0.574:2
chr8	2017596	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,5:30:118:0.042:2	./.
chr8	2021421	rs2272720	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,32:33:76:0.421:2	0/1:23,19:32:42:0.452:2	0/1:5,5:31:10:0.500:2	0/1:72,54:32:126:0.429:2	0/1:63,47:32:110:0.427:2	./.	0/1:0,94:32:94:1.00:2	0/1:77,55:32:132:0.417:2	0/1:72,50:34:122:0.410:2	0/1:43,41:33:84:0.488:2	0/1:0,101:32:102:1.00:2
chr8	2027633	rs1440291	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,25:32:46:0.543:2	0/1:12,12:32:24:0.500:2	./.	0/1:33,19:32:53:0.365:2	0/1:0,51:32:51:1.00:2	0/1:19,20:32:39:0.513:2	./.	./.	0/1:25,41:33:66:0.621:2	./.	./.
chr8	2027652	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:32:88:0.046:2	./.	./.	./.	./.
chr8	2037833	rs2294061	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,10:31:23:0.435:2	./.	0/1:68,45:30:113:0.398:2	0/1:68,44:30:112:0.393:2	./.	./.	./.	./.	./.
chr8	2037875	rs2294062	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,16:31:27:0.593:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	2040181	rs17064685	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,73:29:148:0.493:2	./.	./.	./.	./.	./.
chr8	2040298	rs2235122	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,72:32:146:0.493:2	0/1:80,63:32:143:0.441:2	./.	./.	./.	0/1:43,80:33:123:0.650:2	./.	./.
chr8	2040337	rs6420202	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:28:71:1.00:2	0/1:0,30:28:30:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,89:28:89:1.00:2	0/1:0,91:28:91:1.00:2	0/1:0,88:28:88:1.00:2	0/1:0,141:28:141:1.00:2	0/1:0,93:28:93:1.00:2	0/1:0,73:29:73:1.00:2	0/1:0,72:28:72:1.00:2	0/1:0,71:28:72:1.00:2
chr8	2041894	rs35335787	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:31:14:0.571:2	./.	./.	./.	./.	0/1:83,39:32:122:0.320:2	./.	./.	./.
chr8	2046700	rs2294066	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,8:29:20:0.400:2	0/1:8,9:32:17:0.529:2	./.	./.	0/1:22,12:29:34:0.353:2	0/1:31,11:30:42:0.262:2	./.	0/1:14,23:31:38:0.622:2	./.	./.	0/1:20,14:32:34:0.412:2
chr8	2048811	rs4876227	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:32:86:1.00:2	0/1:0,47:33:47:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,146:33:148:1.00:2	0/1:0,87:31:88:1.00:2	0/1:0,124:32:124:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,139:31:139:1.00:2	0/1:0,136:33:136:1.00:2	0/1:0,121:33:121:1.00:2	0/1:1,110:32:111:0.991:2
chr8	2048831	rs968381	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:47,31:33:78:0.397:2	0/1:28,16:32:44:0.364:2	./.	./.	0/1:46,23:31:70:0.333:2	0/1:57,47:33:104:0.452:2	./.	0/1:62,66:32:128:0.516:2	./.	./.	0/1:51,42:32:93:0.452:2
chr8	2054066	rs17684416	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,82:33:161:0.513:2	0/1:65,46:32:112:0.414:2	./.	0/1:88,89:33:177:0.503:2	./.	./.	0/1:76,56:33:132:0.424:2
chr8	2054171	rs3817705	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:2,32:32:34:0.941:2	0/1:0,19:32:19:1.00:2	./.	0/1:1,32:31:33:0.970:2	./.	0/1:21,21:31:42:0.500:2	0/1:1,23:31:24:0.958:2	0/1:12,11:30:23:0.478:2	./.	0/1:0,28:33:28:1.00:2	./.
chr8	2056569	rs1978898	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,21:32:69:0.304:2	./.	./.	./.	0/1:0,80:33:80:1.00:2	./.	0/1:70,41:32:111:0.369:2
chr8	2057298	rs2280897	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,23:30:48:0.479:2	./.	./.	0/1:54,26:32:80:0.325:2	./.	./.	./.
chr8	2071174	rs17854780	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,46:34:91:0.505:2	./.	./.
chr8	2071445	rs35244895	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,40:31:107:0.374:2	./.	./.	./.	./.	./.	0/1:95,98:32:193:0.508:2
chr8	2071472	rs34025654	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,58:29:139:0.417:2	./.	./.	./.	./.	./.	0/1:89,102:30:191:0.534:2
chr8	2088797	rs61733951	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,4:33:26:0.154:2	./.	./.	./.	./.	./.	./.
chr8	2089129	rs78240172	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,20:32:51:0.392:2	./.	./.	./.	0/1:29,14:33:43:0.326:2	./.
chr8	2092718	rs147501499	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,63:31:130:0.485:2	./.	./.	./.	./.	./.	./.
chr8	2092803	rs1063523	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,21:28:51:0.412:2	0/1:26,20:29:46:0.435:2	./.	./.	0/1:22,34:30:56:0.607:2	0/1:9,27:30:36:0.750:2	0/1:22,15:30:37:0.405:2
chr8	2800096	rs11984691	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,13:33:27:0.481:2	0/1:6,3:32:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	2807783	rs35043129	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,11:30:36:0.314:2	./.	./.	./.	./.	./.	0/1:47,46:32:93:0.495:2
chr8	2808730	rs34337712	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,28:29:63:0.467:2	./.	./.
chr8	2820043	rs4876056	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,27:31:72:0.375:2	./.	./.	./.	./.	./.
chr8	2820745	rs667859	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,14:30:28:0.500:2	0/1:10,17:33:27:0.630:2	./.	./.	0/1:15,16:34:31:0.516:2	0/1:19,13:34:32:0.406:2	./.	./.	./.	0/1:14,9:34:23:0.391:2	0/1:14,15:33:29:0.517:2
chr8	2820895	rs35515847	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,30:31:62:0.484:2	./.	./.	./.	./.
chr8	2832139	rs667595	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:33:29:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,3:33:3:1.00:2	0/1:0,10:33:10:1.00:2	0/1:10,4:32:14:0.286:2	0/1:3,7:33:10:0.700:2	0/1:15,6:32:21:0.286:2	0/1:12,12:32:24:0.500:2	0/1:4,7:31:11:0.636:2	0/1:2,15:32:17:0.882:2	0/1:10,4:33:14:0.286:2
chr8	2909992	rs6558702	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,55:32:55:1.00:2	0/1:50,32:32:82:0.390:2	0/1:25,31:32:56:0.554:2	0/1:0,89:32:89:1.00:2	0/1:29,27:33:56:0.482:2	0/1:14,25:32:39:0.641:2	0/1:31,25:33:56:0.446:2
chr8	2910020	rs6558703	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:33:60:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,74:32:75:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,124:32:124:1.00:2	0/1:0,78:34:78:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,71:32:72:1.00:2
chr8	2910075	rs35071327	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,34:31:78:0.436:2	./.	./.	./.	./.
chr8	2944766	rs80307148	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,42:30:90:0.467:2	./.	./.	./.	./.	./.	./.	./.
chr8	2965244	rs3824271	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,21:33:53:0.396:2	0/1:16,23:33:39:0.590:2	0/1:0,4:32:4:1.00:2	0/1:17,27:34:44:0.614:2	0/1:21,13:32:34:0.382:2	0/1:0,40:32:40:1.00:2	0/1:32,13:34:45:0.289:2	0/1:0,40:33:40:1.00:2	0/1:0,54:34:54:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,50:33:50:1.00:2
chr8	2966208	rs199914130	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,26:31:49:0.531:2	./.	./.	./.	./.	./.	./.	./.
chr8	3072107	rs73183587	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,99:32:192:0.516:2	./.	./.	0/1:68,65:32:133:0.489:2	0/1:68,81:32:149:0.544:2	./.	0/1:78,56:32:134:0.418:2	./.
chr8	3076959	rs28455997	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr8	3200877	rs2161752	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,90:32:172:0.523:2
chr8	3224561	rs4875703	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:33,4:29:37:0.108:2	0/1:0,8:28:8:1.00:2	0/1:32,36:30:68:0.529:2	0/1:30,28:28:58:0.483:2	./.	./.	./.	./.	0/1:28,27:29:55:0.491:2	0/1:35,28:30:63:0.444:2
chr8	3253768	rs3802303	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,53:29:130:0.408:2	./.	./.	./.	0/1:66,70:30:136:0.515:2	./.	0/1:85,55:30:141:0.393:2	./.
chr8	3265590	rs10088378	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:31:11:1.00:2	0/1:0,46:31:46:1.00:2	0/1:27,32:31:59:0.542:2	0/1:33,30:31:63:0.476:2	./.	0/1:2,55:31:57:0.965:2	./.	0/1:0,54:31:54:1.00:2	0/1:49,33:31:82:0.402:2
chr8	3265731	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,10:32:57:0.175:2	./.
chr8	3267027	rs182017822	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,21:34:47:0.447:2	./.	./.
chr8	3351147	rs17066296	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,25:32:64:0.391:2	./.	./.	./.
chr8	3351195	rs56109797	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,34:30:86:0.395:2	./.	./.	./.
chr8	3855508	rs71521901	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,46:30:101:0.455:2	./.	./.	./.	./.
chr8	4277527	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,18:31:42:0.429:2	./.	./.	./.	./.	./.	./.
chr8	4494905	rs17417724	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,23:31:36:0.639:2	./.	./.	./.	0/1:30,16:31:46:0.348:2	0/1:26,21:32:47:0.447:2	0/1:35,24:29:59:0.407:2	./.
chr8	6272399	rs2305022	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,15:32:49:0.306:2	0/1:17,24:32:41:0.585:2	./.	0/1:0,53:31:53:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,36:31:36:1.00:2	0/1:25,14:31:39:0.359:2	0/1:36,25:31:61:0.410:2	0/1:0,33:33:33:1.00:2	0/1:43,37:32:80:0.463:2	0/1:40,52:32:92:0.565:2
chr8	6296550	rs2442513	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:31:24:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,5:31:5:1.00:2	0/1:1,27:30:28:0.964:2	0/1:0,20:31:20:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,22:32:22:1.00:2	0/1:1,23:30:24:0.958:2	0/1:0,51:30:51:1.00:2
chr8	6302154	rs2083914	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:24,25:31:49:0.510:2	0/1:10,18:31:28:0.643:2	./.	./.	./.	./.	0/1:13,16:31:29:0.552:2	0/1:17,19:30:36:0.528:2	./.	0/1:24,15:31:39:0.385:2	0/1:25,33:32:58:0.569:2
chr8	6302183	rs930557	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,27:33:67:0.403:2	0/1:24,16:32:40:0.400:2	0/1:2,4:33:6:0.667:2	0/1:2,50:32:52:0.962:2	0/1:0,59:32:59:1.00:2	./.	0/1:31,23:32:54:0.426:2	0/1:41,38:32:79:0.481:2	0/1:0,80:33:80:1.00:2	0/1:29,34:32:63:0.540:2	0/1:49,32:33:81:0.395:2
chr8	6302418	rs2515569	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:1,31:32:32:0.969:2	0/1:0,11:32:11:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,76:31:76:1.00:2
chr8	6303025	rs2584	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,60:31:144:0.417:2	0/1:76,36:32:112:0.321:2	0/1:74,56:32:130:0.431:2	./.	0/1:91,53:31:144:0.368:2	0/1:74,59:33:133:0.444:2	./.	./.
chr8	6338306	rs12674488	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:32,24:31:56:0.429:2	0/1:22,11:32:33:0.333:2	0/1:4,3:32:7:0.429:2	./.	./.	./.	0/1:28,27:31:55:0.491:2	0/1:29,35:31:64:0.547:2	./.	0/1:28,20:31:48:0.417:2	./.
chr8	6371303	rs17063434	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,47:31:81:0.588:2
chr8	6377433	rs1961222	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,83:32:161:0.516:2	0/1:50,55:32:105:0.524:2	0/1:20,8:31:28:0.286:2	0/1:85,103:32:188:0.548:2	0/1:104,91:32:195:0.467:2	0/1:105,89:32:194:0.459:2	0/1:91,106:32:197:0.538:2	0/1:88,101:31:189:0.534:2	0/1:0,185:33:185:1.00:2	0/1:108,87:32:195:0.446:2	0/1:80,106:32:186:0.570:2
chr8	6378763	rs3020221	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,83:32:157:0.529:2	0/1:55,58:32:113:0.513:2	0/1:20,13:31:33:0.394:2	0/1:115,68:31:183:0.372:2	0/1:93,69:31:162:0.426:2	0/1:104,89:31:193:0.461:2	0/1:71,84:31:155:0.542:2	0/1:108,80:31:188:0.426:2	0/1:0,188:32:188:1.00:2	0/1:87,89:32:176:0.506:2	0/1:112,82:32:194:0.423:2
chr8	6378784	rs55633437	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:96,69:33:165:0.418:2	0/1:55,49:32:104:0.471:2	./.	./.	./.	./.	0/1:86,67:33:153:0.438:2	./.	./.	0/1:93,80:33:173:0.462:2	./.
chr8	6389889	rs6559167	C	A,G	.	PASS	AC=8,2;AF=0.267,0.067;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0/1:33:150:0.440:2	0/1:33:96:0.469:2	./.	0/1:33:152:0.444:2	0/1:33:185:0.527:2	0/2:29:151:1.00:2	0/1:33:168:0.387:2	0/1:32:191:0.503:2	0/2:30:196:0.357:2	0/1:33:167:0.485:2	0/1:33:185:0.470:2
chr8	6478986	rs2912010	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:32:3:1.00:2	0/1:16,14:31:30:0.467:2	0/1:15,28:30:43:0.651:2	./.	0/1:29,16:31:45:0.356:2	0/1:19,17:31:36:0.472:2	0/1:0,24:32:24:1.00:2	0/1:17,6:31:23:0.261:2	./.
chr8	6479042	rs1057090	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:28:4:0.750:2	0/1:22,22:30:44:0.500:2	0/1:31,31:30:62:0.500:2	./.	0/1:0,36:30:36:1.00:2	0/1:18,18:30:36:0.500:2	0/1:0,25:30:25:1.00:2	0/1:17,9:31:26:0.346:2	./.
chr8	6479178	rs2912016	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,6:30:11:0.545:2	0/1:35,28:30:63:0.444:2	./.	./.	0/1:3,42:31:45:0.933:2	./.	0/1:33,29:32:62:0.468:2	0/1:26,17:33:43:0.395:2	./.
chr8	6500544	rs1057091	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,6:32:10:0.600:2	0/1:3,107:33:110:0.973:2	0/1:57,63:33:120:0.525:2	./.	0/1:86,69:33:155:0.445:2	0/1:67,79:33:146:0.541:2	0/1:2,136:34:138:0.986:2	0/1:58,45:33:103:0.437:2	./.
chr8	6566351	rs62497278	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,25:32:44:0.568:2	./.	./.	./.	0/1:15,13:32:28:0.464:2	./.
chr8	6679412	rs76351821	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,32:33:81:0.395:2	0/1:32,20:32:52:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	6686791	rs2741087	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,28:30:68:0.412:2	./.	./.	0/1:139,4:32:143:0.028:2	./.	./.	./.
chr8	6690276	rs2741098	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,35:31:82:0.427:2	0/1:17,17:31:34:0.500:2	0/1:3,2:34:5:0.400:2	0/1:55,49:32:104:0.471:2	0/1:72,63:32:136:0.467:2	./.	0/1:2,127:32:129:0.984:2	0/1:62,55:32:117:0.470:2	0/1:57,49:33:106:0.462:2	./.	0/1:0,81:31:81:1.00:2
chr8	6735300	rs2293958	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:31:28:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,41:30:41:1.00:2	0/1:36,18:31:54:0.333:2	0/1:0,50:29:50:1.00:2	0/1:0,43:31:43:1.00:2	0/1:14,16:31:30:0.533:2	0/1:1,51:31:52:0.981:2
chr8	6735399	rs11362	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,18:33:41:0.439:2	0/1:23,11:32:34:0.324:2	0/1:8,7:32:15:0.467:2	0/1:0,52:31:52:1.00:2	./.	0/1:0,49:31:49:1.00:2	0/1:49,27:32:76:0.355:2	0/1:41,35:31:76:0.461:2	0/1:1,60:32:61:0.984:2	0/1:20,16:32:36:0.444:2	0/1:0,51:32:51:1.00:2
chr8	6793540	rs736227	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,49:32:49:1.00:2	0/1:1,26:31:27:0.963:2	./.	0/1:1,59:31:60:0.983:2	0/1:0,77:31:77:1.00:2	0/1:0,54:31:54:1.00:2	0/1:53,38:32:91:0.418:2	0/1:0,80:32:80:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,47:32:47:1.00:2	0/1:32,29:31:61:0.475:2
chr8	6793581	rs2738100	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:2,49:31:51:0.961:2	0/1:0,28:30:28:1.00:2	./.	0/1:2,49:30:51:0.961:2	./.	0/1:0,54:31:54:1.00:2	0/1:61,38:31:100:0.384:2	./.	./.	./.	./.
chr8	6836028	rs200133465	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,11:28:64:0.172:2	./.	./.	0/1:150,47:29:197:0.239:2	0/1:176,24:30:200:0.120:2	./.	0/1:166,31:29:197:0.157:2	./.	./.
chr8	6836058	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:177,23:32:200:0.115:2	./.	./.	./.	./.	./.	./.	./.
chr8	6855145	rs200767625	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,10:28:68:0.147:2	./.	./.	0/1:145,50:29:195:0.256:2	0/1:168,28:29:196:0.143:2	./.	0/1:167,21:30:188:0.112:2	./.	./.
chr8	6855175	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:177,14:32:191:0.073:2	./.	./.	./.	./.	./.	./.	./.
chr8	6873603	rs145076681	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,5:31:190:0.026:2	0/1:188,5:32:193:0.026:2	./.	0/1:4,3:26:7:0.429:2	./.
chr8	6874244	rs200031517	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,9:29:67:0.134:2	./.	./.	0/1:148,48:30:196:0.245:2	0/1:170,25:29:195:0.128:2	./.	0/1:171,24:31:196:0.123:2	./.	./.
chr8	6874274	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:165,31:32:196:0.158:2	./.	./.	./.	./.	./.	./.	./.
chr8	6913031	rs2272719	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,13:31:26:0.500:2	0/1:6,4:32:10:0.400:2	0/1:2,3:32:5:0.600:2	0/1:20,14:32:34:0.412:2	./.	0/1:14,12:29:26:0.462:2	./.	0/1:20,19:31:39:0.487:2	0/1:13,10:30:23:0.435:2	./.	0/1:10,11:30:21:0.524:2
chr8	7190146	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,33:29:109:0.303:2	./.	./.	./.	./.	./.	./.	./.
chr8	7190213	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,7:28:100:0.070:2	./.	./.	./.	./.	./.	./.	./.
chr8	7190919	rs368880221	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,94:32:97:0.969:2	./.	./.	./.	./.	./.
chr8	7191216	rs202154298	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,12:32:14:0.857:2	./.	./.	./.	./.	./.
chr8	7191336	rs375768371	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,3:31:37:0.081:2	./.	./.	./.	./.	./.
chr8	7194770	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,3:33:15:0.200:2	./.	./.	./.	./.	./.	./.	./.
chr8	7194874	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,28:29:89:0.315:2	./.	./.	./.	./.	./.	./.	./.
chr8	7194941	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,5:28:107:0.047:2	./.	./.	./.	./.	./.	./.	./.
chr8	7195467	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,3:32:21:0.143:2	./.	./.	./.	./.	./.	./.	./.
chr8	7195473	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,3:29:21:0.143:2	./.	./.	./.	./.	./.	./.	./.
chr8	7195495	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,5:33:30:0.167:2	./.	./.	./.	./.	./.	./.	./.
chr8	7195607	rs200631940	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,75:31:151:0.500:2	0/1:67,42:31:110:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	7195762	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,78:31:157:0.497:2	./.	./.	./.	./.	./.	./.	./.
chr8	7195873	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,8:31:24:0.333:2	./.	./.	./.	./.	./.	./.	./.
chr8	7195899	rs200111135	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,7:30:17:0.412:2	./.	./.	./.	./.	./.	./.	./.
chr8	7195924	rs202019527	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:33:11:0.364:2	./.	./.	./.	./.	./.	./.	./.
chr8	7196111	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,61:30:118:0.517:2	./.	./.	./.	./.	./.	./.	./.
chr8	7196117	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,62:31:121:0.512:2	./.	./.	./.	./.	./.	./.	./.
chr8	7196200	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,4:33:51:0.078:2	./.	0/1:18,4:33:22:0.182:2	./.	./.	./.	./.	./.
chr8	7234897	rs199729787	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,54:32:106:0.509:2	0/1:80,58:32:138:0.420:2	0/1:36,26:31:62:0.419:2	0/1:42,82:32:124:0.661:2	0/1:76,55:32:131:0.420:2	0/1:1,108:32:109:0.991:2	0/1:98,79:32:177:0.446:2	0/1:59,95:32:154:0.617:2	0/1:47,90:33:137:0.657:2	0/1:41,105:33:146:0.719:2	0/1:84,104:33:188:0.553:2
chr8	7234911	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,42:31:176:0.240:2	./.	0/1:92,42:32:134:0.313:2	./.	0/1:145,41:32:186:0.220:2
chr8	7234938	.	A	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,39:32:141:0.277:2	./.	0/1:82,37:33:119:0.311:2	./.	0/1:130,31:31:161:0.193:2
chr8	7235009	rs201413171	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,14:30:42:0.333:2	0/1:12,7:30:19:0.368:2	0/1:0,2:30:2:1.00:2	0/1:18,18:30:36:0.500:2	0/1:41,18:28:59:0.305:2	0/1:1,35:29:36:0.972:2	0/1:39,13:29:52:0.250:2	0/1:19,19:30:38:0.500:2	0/1:16,20:30:36:0.556:2	0/1:17,29:30:46:0.630:2	0/1:28,29:30:58:0.509:2
chr8	7305599	rs200890643	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,77:32:161:0.478:2	0/1:170,30:31:200:0.150:2	0/1:133,57:33:190:0.300:2	0/1:134,19:32:153:0.124:2	0/1:157,42:33:199:0.211:2	0/1:137,53:33:190:0.279:2	./.	0/1:97,80:32:177:0.452:2
chr8	7308386	rs1042797	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:29:67:1.00:2	0/1:0,32:29:33:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,44:28:44:1.00:2	0/1:30,22:28:52:0.423:2	0/1:0,25:25:25:1.00:2	0/1:65,49:30:114:0.430:2	0/1:59,23:26:82:0.280:2	0/1:47,11:29:58:0.190:2	0/1:62,20:28:82:0.244:2	0/1:0,95:29:95:1.00:2
chr8	7308403	rs17350582	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,6:33:7:0.857:2	./.	0/1:58,4:32:62:0.065:2	./.	./.	./.
chr8	7308708	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,6:32:180:0.033:2	./.
chr8	7308729	rs2294141	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:4,128:33:133:0.970:2	0/1:1,99:33:100:0.990:2	./.	./.	./.	./.	0/1:79,71:33:150:0.473:2	./.	./.	0/1:134,43:32:178:0.243:2	0/1:1,108:32:109:0.991:2
chr8	7318948	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:180,4:34:184:0.022:2	./.	./.	./.	./.	./.	./.
chr8	7320265	rs138861652	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:59,13:30:72:0.181:2	0/1:132,58:32:190:0.305:2	0/1:107,88:31:195:0.451:2	0/1:123,62:31:186:0.335:2	./.	./.	0/1:141,57:33:198:0.288:2	0/1:135,56:32:191:0.293:2	./.
chr8	7327984	rs200596377	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,35:32:144:0.243:2	./.	./.	0/1:129,68:32:197:0.345:2	./.	0/1:145,51:32:196:0.260:2	./.	./.	./.
chr8	7327991	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:136,61:33:197:0.310:2	0/1:98,100:32:198:0.505:2	./.	./.	./.	0/1:138,59:34:197:0.299:2	./.	./.
chr8	7332563	rs200740890	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:92,19:30:111:0.171:2	0/1:79,118:30:197:0.599:2	0/1:67,129:29:196:0.658:2	./.	./.	0/1:82,113:30:195:0.579:2	./.	0/1:114,81:30:195:0.415:2	0/1:160,34:28:194:0.175:2
chr8	7340204	rs138253070	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:100,86:30:187:0.462:2	0/1:88,102:29:190:0.537:2	./.	0/1:123,73:30:196:0.372:2	./.	0/1:135,65:30:200:0.325:2	./.	0/1:136,60:30:196:0.306:2	0/1:134,64:30:198:0.323:2	0/1:159,37:30:196:0.189:2	./.
chr8	7345253	rs200831596	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,16:31:107:0.150:2	./.	0/1:165,35:32:200:0.175:2	./.	./.	0/1:139,59:32:198:0.298:2	0/1:133,59:33:192:0.307:2	0/1:154,41:32:195:0.210:2	./.
chr8	7347054	rs199678025	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,36:31:197:0.183:2	./.	0/1:143,51:31:195:0.263:2	./.	0/1:159,39:31:198:0.197:2
chr8	7353480	rs201256319	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,185:32:190:0.974:2	0/1:8,179:32:187:0.957:2	0/1:104,26:31:130:0.200:2	0/1:2,185:32:187:0.989:2	0/1:167,32:32:199:0.161:2	0/1:101,95:31:196:0.485:2	0/1:142,56:32:198:0.283:2	0/1:91,106:32:197:0.538:2	0/1:76,118:33:194:0.608:2	0/1:116,83:32:199:0.417:2	0/1:113,85:33:198:0.429:2
chr8	7366713	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,57:32:196:0.291:2	./.	./.	./.	./.	./.	./.	./.
chr8	7430152	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.
chr8	7430199	rs186395635	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.
chr8	7430205	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.
chr8	7430238	rs182890542	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.
chr8	7669328	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,36:31:175:0.206:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	7669362	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:136,61:32:197:0.310:2	./.	./.	./.	./.	./.	./.	./.
chr8	7673126	rs200631345	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,190:32:192:0.990:2	0/1:8,146:32:154:0.948:2	0/1:85,13:31:98:0.133:2	0/1:4,187:31:191:0.979:2	0/1:162,37:31:199:0.186:2	0/1:97,99:31:196:0.505:2	0/1:145,54:32:199:0.271:2	0/1:81,116:31:197:0.589:2	0/1:88,108:33:196:0.551:2	0/1:117,79:32:196:0.403:2	0/1:121,75:32:196:0.383:2
chr8	7679549	rs200757797	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,35:31:195:0.179:2	./.	0/1:150,47:31:197:0.239:2	./.	0/1:157,41:30:198:0.207:2
chr8	7681350	.	A	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,18:31:81:0.222:2	./.	0/1:147,51:31:198:0.258:2	./.	./.	0/1:127,72:31:199:0.362:2	0/1:141,57:32:198:0.288:2	0/1:156,41:32:197:0.208:2	./.
chr8	7686397	rs146195936	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:101,95:29:196:0.485:2	0/1:98,99:29:197:0.503:2	./.	0/1:122,72:30:194:0.371:2	./.	0/1:131,58:29:191:0.307:2	./.	0/1:134,63:29:197:0.320:2	0/1:131,66:30:197:0.335:2	0/1:150,45:29:195:0.231:2	./.
chr8	7694034	rs202183310	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:77,28:30:105:0.267:2	0/1:75,120:31:195:0.615:2	0/1:63,133:29:196:0.679:2	./.	./.	0/1:79,117:30:196:0.597:2	./.	0/1:109,83:31:192:0.432:2	0/1:155,31:29:186:0.167:2
chr8	7698603	rs144325550	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:150,47:33:197:0.239:2	0/1:118,80:32:198:0.404:2	./.	./.	./.	0/1:149,46:34:195:0.236:2	./.	./.
chr8	7698610	rs140952426	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:128,39:32:167:0.234:2	./.	./.	0/1:135,61:33:196:0.311:2	./.	0/1:148,50:33:198:0.253:2	./.	./.	./.
chr8	7706329	rs202056068	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,11:30:27:0.407:2	0/1:117,59:31:176:0.335:2	0/1:107,88:31:195:0.451:2	0/1:120,61:31:181:0.337:2	./.	./.	0/1:132,54:32:186:0.290:2	0/1:141,45:32:186:0.242:2	./.
chr8	7718180	rs1071602	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,4:27:4:1.00:2	0/1:0,5:30:5:1.00:2	./.	0/1:103,5:29:108:0.046:2	./.	./.	0/1:52,10:29:62:0.161:2	./.	./.	./.	0/1:148,11:27:159:0.069:2
chr8	7718187	rs3177011	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:32:5:0.800:2	./.	0/1:89,43:32:132:0.326:2	0/1:36,107:32:143:0.748:2	./.	0/1:44,60:33:104:0.577:2	./.	0/1:2,51:33:53:0.962:2	./.
chr8	7720995	rs199909847	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,138:32:196:0.704:2	0/1:136,55:32:192:0.288:2	0/1:145,54:32:199:0.271:2	0/1:168,30:33:198:0.152:2	0/1:136,62:32:198:0.313:2	0/1:129,65:34:194:0.335:2	./.	0/1:110,81:33:191:0.424:2
chr8	7752282	rs117708479	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,45:30:185:0.247:2
chr8	7754021	rs200885320	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:109,81:29:190:0.426:2	0/1:106,71:30:177:0.401:2	./.	./.	./.	./.	0/1:93,104:29:197:0.528:2	0/1:140,54:29:194:0.278:2	0/1:135,61:30:196:0.311:2	./.	0/1:104,80:29:184:0.435:2
chr8	8176221	rs13269488	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:31:5:1.00:2	0/1:0,28:30:28:1.00:2	./.	0/1:11,15:30:26:0.577:2	0/1:14,14:31:28:0.500:2	0/1:0,24:32:24:1.00:2	0/1:17,21:33:38:0.553:2	0/1:27,10:31:37:0.270:2	./.
chr8	8176554	rs12549973	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,14:31:15:0.933:2	./.	0/1:3,6:29:9:0.667:2	./.	0/1:0,9:30:9:1.00:2	0/1:1,9:31:10:0.900:2	./.	./.
chr8	8234077	rs4840952	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:45,43:29:88:0.489:2	0/1:24,21:29:45:0.467:2	./.	./.	./.	./.	0/1:25,30:28:55:0.545:2	0/1:36,39:29:75:0.520:2	0/1:29,30:29:59:0.508:2	0/1:37,27:26:64:0.422:2	0/1:29,21:29:50:0.420:2
chr8	8234113	rs2921005	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,22:30:57:0.386:2	./.	./.
chr8	8234192	rs4840953	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:16,11:31:27:0.407:2	0/1:8,7:32:15:0.467:2	./.	./.	./.	./.	0/1:13,15:32:28:0.536:2	0/1:9,22:31:31:0.710:2	0/1:9,19:33:28:0.679:2	0/1:18,6:31:24:0.250:2	0/1:10,7:28:17:0.412:2
chr8	8234218	rs4840954	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:9,6:31:15:0.400:2	0/1:4,6:30:10:0.600:2	./.	./.	./.	./.	0/1:6,11:29:17:0.647:2	0/1:8,14:30:22:0.636:2	0/1:10,4:30:14:0.286:2	0/1:12,5:31:17:0.294:2	0/1:7,3:29:10:0.300:2
chr8	8234219	rs4840955	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:9,6:31:15:0.400:2	0/1:4,6:32:10:0.600:2	./.	./.	./.	./.	0/1:6,11:31:17:0.647:2	0/1:8,14:30:22:0.636:2	0/1:8,4:33:12:0.333:2	0/1:12,5:33:17:0.294:2	0/1:7,3:32:10:0.300:2
chr8	8234525	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:33:150:0.027:2	./.	./.
chr8	8234714	rs3896980	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:5,12:31:17:0.706:2	./.	./.	./.	./.	./.	./.	0/1:10,6:32:16:0.375:2	0/1:7,9:30:16:0.563:2	./.	0/1:10,19:31:29:0.655:2
chr8	8560909	rs12153	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,47:33:112:0.420:2	./.	0/1:52,46:33:98:0.469:2	./.	0/1:57,31:33:88:0.352:2	./.	0/1:56,31:33:87:0.356:2	0/1:65,53:32:118:0.449:2
chr8	8561399	rs1060107	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,70:32:174:0.405:2	./.	0/1:124,50:33:174:0.287:2	./.	0/1:127,55:32:182:0.302:2	./.	0/1:86,49:33:137:0.363:2	0/1:97,59:33:156:0.378:2
chr8	8561442	rs4840350	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,54:33:127:0.425:2	./.	0/1:101,44:32:145:0.303:2	./.	0/1:108,43:33:151:0.285:2	./.	0/1:68,32:32:100:0.320:2	0/1:76,43:32:119:0.361:2
chr8	8561452	rs1060106	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,46:31:116:0.400:2	./.	0/1:90,41:30:131:0.313:2	./.	0/1:95,37:30:132:0.280:2	./.	0/1:61,28:31:89:0.315:2	0/1:68,34:32:103:0.333:2
chr8	8561536	rs11249882	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,3:30:16:0.188:2	./.	0/1:14,3:32:17:0.176:2	./.	0/1:7,11:31:18:0.611:2	0/1:16,8:32:24:0.333:2
chr8	8561537	rs11249883	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,3:31:14:0.214:2	./.	0/1:13,3:32:16:0.188:2	./.	0/1:7,11:31:18:0.611:2	0/1:15,8:32:23:0.348:2
chr8	8561552	rs11249884	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,3:32:11:0.273:2	./.	0/1:5,10:32:15:0.667:2	0/1:10,6:32:16:0.375:2
chr8	8643582	rs2271340	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,47:33:47:1.00:2	0/1:1,30:33:31:0.968:2	./.	0/1:39,47:33:86:0.547:2	0/1:0,56:32:56:1.00:2	0/1:0,67:31:67:1.00:2	0/1:45,36:33:81:0.444:2	0/1:0,88:33:88:1.00:2	0/1:42,33:34:75:0.440:2	0/1:0,75:33:76:1.00:2	0/1:0,86:33:87:1.00:2
chr8	8654898	rs3827812	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,4:32:12:0.333:2	./.	./.	0/1:40,34:29:74:0.459:2	./.	./.	0/1:63,42:31:105:0.400:2	./.	./.
chr8	8747894	rs429433	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,23:33:23:1.00:2	0/1:0,18:32:18:1.00:2	./.	0/1:14,12:32:26:0.462:2	0/1:0,26:32:26:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,30:32:30:1.00:2
chr8	8748180	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:31:46:0.087:2	./.
chr8	8748318	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,17:31:108:0.157:2
chr8	8749133	rs377646802	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,4:29:89:0.045:2	./.	./.	./.	./.	./.	./.	./.
chr8	8749729	rs3748141	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,7:32:11:0.636:2	./.	./.
chr8	8860620	rs2288672	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:30:3:1.00:2	0/1:0,3:30:3:1.00:2	./.	0/1:0,4:33:4:1.00:2	0/1:0,2:30:2:1.00:2	0/1:0,2:34:2:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,2:31:2:1.00:2
chr8	8869199	rs9650616	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:29:5:1.00:2	./.	0/1:16,13:30:29:0.448:2	0/1:24,20:30:44:0.455:2	0/1:16,6:30:22:0.273:2	0/1:19,18:31:37:0.486:2	0/1:0,46:31:46:1.00:2	0/1:19,21:31:40:0.525:2	./.
chr8	9414049	rs33945943	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,24:31:34:0.706:2	./.	./.	0/1:18,19:30:37:0.514:2	./.	./.	./.
chr8	9564437	rs7006985	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,102:30:104:0.981:2	0/1:0,44:30:44:1.00:2	0/1:0,13:30:13:1.00:2	0/1:52,72:30:124:0.581:2	0/1:64,54:29:118:0.458:2	0/1:0,127:30:127:1.00:2	0/1:0,140:30:140:1.00:2	0/1:2,120:30:122:0.984:2	0/1:0,139:31:139:1.00:2	0/1:46,58:30:104:0.558:2	0/1:2,125:30:127:0.984:2
chr8	9577940	rs6601360	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:32:71:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,109:32:109:1.00:2	0/1:0,110:31:110:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,128:33:129:1.00:2	0/1:1,140:33:141:0.993:2	0/1:0,91:33:91:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,97:32:97:1.00:2
chr8	9577978	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,29:31:106:0.274:2
chr8	9599276	rs79397096	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,89:32:177:0.503:2	./.	./.	./.
chr8	9605572	rs377210789	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:33:129:0.031:2	./.	./.	./.	./.
chr8	9609331	rs13265931	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,9:32:28:0.321:2	./.	./.	./.	./.	./.	./.
chr8	9912105	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:32:129:0.031:2	./.	./.	./.	./.	./.
chr8	10285810	rs3750314	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,18:33:32:0.563:2	./.	./.	./.	./.	./.	./.	./.
chr8	10383138	rs35102108	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,76:32:156:0.487:2	./.	0/1:43,42:33:85:0.494:2	./.
chr8	10383226	rs4521726	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:28:30:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,42:30:42:1.00:2	0/1:0,48:29:48:1.00:2	0/1:0,40:28:40:1.00:2	0/1:0,34:30:34:1.00:2	0/1:20,26:29:46:0.565:2	0/1:0,39:31:39:1.00:2	0/1:7,20:29:27:0.741:2	0/1:0,34:30:34:1.00:2
chr8	10383231	rs79049699	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,30:30:31:0.968:2	./.	./.	./.	./.
chr8	10387166	rs200106190	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,82:31:161:0.509:2	./.	./.	./.
chr8	10387207	rs75926785	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,36:32:85:0.424:2	./.	./.	./.	./.	./.
chr8	10388826	rs4841367	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,45:29:82:0.549:2	./.	./.	./.	./.	./.
chr8	10390452	rs4406360	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:32:5:0.600:2	0/1:46,37:30:83:0.446:2	0/1:25,25:30:50:0.500:2	./.	./.	./.	0/1:50,27:31:77:0.351:2	./.	0/1:44,42:30:86:0.488:2
chr8	10390527	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	10396054	rs6601483	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,13:33:17:0.765:2	0/1:71,56:33:127:0.441:2	0/1:38,30:32:70:0.441:2	./.	0/1:0,70:33:70:1.00:2	0/1:55,60:33:115:0.522:2	0/1:54,31:34:85:0.365:2	0/1:28,27:32:56:0.491:2	0/1:0,68:33:68:1.00:2
chr8	10396056	rs61743179	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,36:32:84:0.429:2	./.	./.	./.	./.	./.
chr8	10464604	rs117007660	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:28:11:0.273:2	./.	0/1:43,20:30:63:0.317:2	0/1:30,43:29:73:0.589:2	./.	./.	./.	./.	./.
chr8	10464755	rs55642448	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,41:30:41:1.00:2	0/1:0,26:31:26:1.00:2	./.	0/1:27,25:29:52:0.481:2	./.	./.	./.	0/1:26,20:28:46:0.435:2	0/1:21,21:32:42:0.500:2	./.	0/1:19,31:30:50:0.620:2
chr8	10464885	rs56382513	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,22:29:22:1.00:2	0/1:0,9:29:9:1.00:2	./.	0/1:14,19:29:33:0.576:2	0/1:9,8:26:17:0.471:2	./.	./.	0/1:7,11:26:18:0.611:2	0/1:13,9:27:22:0.409:2	0/1:12,8:29:20:0.400:2	0/1:0,38:28:38:1.00:2
chr8	10465012	rs75797924	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,22:30:47:0.468:2	./.	./.	./.	./.	./.	./.	./.
chr8	10465097	rs4354268	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:30:3:1.00:2	0/1:36,26:30:62:0.419:2	0/1:18,10:30:28:0.357:2	0/1:2,59:30:61:0.967:2	0/1:0,37:30:37:1.00:2	0/1:43,32:31:75:0.427:2	0/1:27,28:32:55:0.509:2	0/1:16,17:30:33:0.515:2	./.
chr8	10465190	rs72494282	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,11:30:33:0.333:2	./.	./.	./.	./.	0/1:25,26:29:51:0.510:2	0/1:37,30:30:67:0.448:2
chr8	10465344	rs11778341	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,13:31:28:0.464:2	./.	./.	./.	./.	0/1:24,19:32:43:0.442:2	0/1:34,23:30:57:0.404:2
chr8	10465399	rs11782670	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,7:27:24:0.292:2	./.	./.	./.	./.	0/1:12,17:26:29:0.586:2	0/1:23,14:29:39:0.378:2
chr8	10465544	rs191247674	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,18:32:45:0.400:2	./.	./.	./.	./.
chr8	10465748	rs11783478	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,32:30:32:1.00:2	0/1:0,23:32:23:1.00:2	./.	0/1:17,23:33:40:0.575:2	0/1:15,6:32:21:0.286:2	./.	./.	0/1:12,10:30:22:0.455:2	0/1:17,16:32:33:0.485:2	0/1:15,19:32:34:0.559:2	0/1:0,36:32:36:1.00:2
chr8	10465771	rs11785822	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:31:38:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,30:31:30:1.00:2	0/1:18,13:32:31:0.419:2	0/1:1,36:31:37:0.973:2	0/1:0,37:32:37:1.00:2
chr8	10465942	rs28446662	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,11:31:24:0.458:2	./.	./.	./.
chr8	10466010	rs181718385	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,4:30:17:0.235:2	./.	./.	./.	./.	./.	./.	./.
chr8	10466019	rs199577777	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,3:33:17:0.176:2	./.	./.	./.	./.	./.	./.	./.
chr8	10466089	rs77968698	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,19:32:33:0.576:2	./.	./.
chr8	10466161	rs79019225	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,54:32:85:0.635:2	./.	./.
chr8	10466482	rs13267180	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,12:30:12:1.00:2	0/1:47,47:30:94:0.500:2	0/1:41,36:30:77:0.468:2	0/1:0,84:29:84:1.00:2	0/1:5,120:30:125:0.960:2	0/1:66,50:31:116:0.431:2	0/1:38,39:31:77:0.506:2	0/1:53,34:30:87:0.391:2	./.
chr8	10467124	rs4841399	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,12:28:19:0.632:2	0/1:8,5:31:13:0.385:2	./.	./.
chr8	10467160	rs62490855	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,13:30:13:1.00:2	0/1:0,13:30:13:1.00:2	./.	0/1:12,11:30:23:0.478:2	./.	./.	./.	./.	./.	./.	0/1:2,11:30:13:0.846:2
chr8	10467168	rs76720252	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,9:26:13:0.692:2	./.	./.	./.	./.	./.
chr8	10467207	rs4840498	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:30:20:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,21:29:21:1.00:2	0/1:0,25:31:25:1.00:2
chr8	10467562	rs13253053	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,10:31:126:0.079:2	./.	./.	./.
chr8	10467564	rs13253055	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,10:31:124:0.081:2	./.	./.	./.
chr8	10467576	rs4840499	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,16:29:66:0.242:2	./.	./.	0/1:115,30:29:145:0.207:2	0/1:95,43:31:138:0.312:2	./.	0/1:80,32:30:112:0.286:2
chr8	10467588	rs78920388	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,24:28:147:0.163:2	./.	./.	./.
chr8	10467589	rs9657518	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:3,100:32:103:0.971:2	0/1:2,70:32:72:0.972:2	./.	0/1:67,77:32:144:0.535:2	./.	./.	./.	0/1:125,23:29:148:0.155:2	./.	0/1:66,52:33:118:0.441:2	0/1:30,75:33:105:0.714:2
chr8	10467604	rs74366179	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:5,91:30:97:0.948:2	0/1:4,61:30:66:0.938:2	./.	0/1:70,81:30:151:0.536:2	./.	./.	./.	./.	./.	0/1:62,54:30:116:0.466:2	0/1:34,75:31:109:0.688:2
chr8	10467605	rs61503212	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,10:31:66:0.152:2	./.	./.	./.	./.	./.	0/1:86,23:31:109:0.211:2
chr8	10467627	rs112656102	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,8:27:47:0.170:2	./.	./.	./.	./.	./.	0/1:77,9:29:86:0.105:2
chr8	10467636	rs369606728	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,3:33:45:0.067:2	./.	./.	./.	0/1:57,18:31:75:0.240:2	./.	./.
chr8	10467637	rs4240659	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,12:30:45:0.267:2	0/1:87,5:29:92:0.054:2	./.	./.	0/1:53,19:31:72:0.264:2	./.	0/1:69,18:32:87:0.207:2
chr8	10467647	rs200373757	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,10:28:62:0.161:2	./.	./.
chr8	10467652	rs4840501	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:32:5:0.800:2	0/1:62,33:32:96:0.347:2	0/1:21,19:32:40:0.475:2	0/1:3,57:32:60:0.950:2	0/1:29,40:33:69:0.580:2	0/1:6,100:31:106:0.943:2	0/1:20,25:32:45:0.556:2	0/1:46,21:31:67:0.313:2	./.
chr8	10467653	rs73201156	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:30:5:0.800:2	0/1:72,25:30:97:0.258:2	0/1:23,18:31:41:0.439:2	0/1:16,47:31:63:0.746:2	0/1:49,23:32:72:0.319:2	0/1:77,29:31:106:0.274:2	0/1:33,13:32:46:0.283:2	0/1:45,21:30:66:0.318:2	./.
chr8	10467702	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,7:32:48:0.146:2	./.	./.	./.
chr8	10468172	rs4840502	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,100:32:101:0.990:2	0/1:0,43:32:43:1.00:2	0/1:6,5:32:11:0.455:2	0/1:75,39:31:114:0.342:2	0/1:97,55:31:152:0.362:2	0/1:0,80:31:80:1.00:2	./.	0/1:84,46:31:130:0.354:2	0/1:64,62:33:126:0.492:2	0/1:53,47:32:100:0.470:2	0/1:57,31:30:88:0.352:2
chr8	10469030	rs62490856	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:30:3:1.00:2	0/1:0,4:30:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	10469233	rs35602868	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:29:9:1.00:2	0/1:60,50:29:110:0.455:2	0/1:69,40:30:109:0.367:2	0/1:3,102:30:106:0.971:2	0/1:4,67:30:71:0.944:2	0/1:74,62:29:136:0.456:2	0/1:0,65:30:65:1.00:2	0/1:43,31:29:74:0.419:2	./.
chr8	10469340	rs57819090	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,46:31:46:1.00:2	0/1:0,34:31:34:1.00:2	./.	0/1:21,29:31:50:0.580:2	./.	./.	./.	./.	./.	./.	0/1:13,15:31:28:0.536:2
chr8	10469817	rs6996950	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:28:35:1.00:2	0/1:0,16:27:16:1.00:2	0/1:0,5:28:5:1.00:2	0/1:0,59:28:59:1.00:2	0/1:34,31:27:65:0.477:2	0/1:0,49:27:50:1.00:2	0/1:1,49:27:51:0.980:2	0/1:3,66:28:69:0.957:2	0/1:0,46:28:47:1.00:2	0/1:28,26:28:55:0.481:2	0/1:18,21:28:39:0.538:2
chr8	10470068	rs74990397	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,7:34:10:0.700:2	./.	0/1:0,9:28:9:1.00:2	./.	0/1:0,2:30:2:1.00:2	0/1:0,4:33:4:1.00:2	./.	./.
chr8	10470148	rs74400517	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:33:2:1.00:2	0/1:5,6:31:11:0.545:2	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.
chr8	10474042	rs4388421	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,24:32:69:0.353:2	0/1:32,15:32:47:0.319:2	./.	./.	./.	./.	0/1:25,17:32:42:0.405:2	0/1:36,35:31:71:0.493:2
chr8	10480165	rs115126172	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,56:32:103:0.544:2	./.	./.	./.	./.	./.
chr8	10480377	rs6601495	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,6:31:18:0.333:2	./.	./.	./.	./.	./.
chr8	10480495	rs202082944	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,23:31:49:0.469:2	./.
chr8	10480522	rs202081611	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,50:32:99:0.510:2	./.	./.	./.	./.	./.	./.	./.
chr8	10530218	rs11250058	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:32:32:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,47:31:48:1.00:2
chr8	10583506	rs4841432	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,44:32:99:0.444:2	0/1:31,27:32:58:0.466:2	0/1:0,6:32:6:1.00:2	0/1:75,69:32:144:0.479:2	0/1:55,47:31:102:0.461:2	0/1:0,105:32:105:1.00:2	0/1:69,65:32:134:0.485:2	0/1:104,54:32:158:0.342:2	./.	0/1:46,61:31:107:0.570:2	./.
chr8	10623138	rs1078543	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,31:30:59:0.525:2	0/1:30,19:29:49:0.388:2	./.	./.	./.	./.
chr8	10623240	rs17711777	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:24,9:29:33:0.273:2	0/1:23,12:28:35:0.343:2	./.	0/1:45,17:30:62:0.274:2	./.	./.	./.	./.	./.	./.	./.
chr8	10689212	rs12375394	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,11:33:17:0.647:2	0/1:41,28:31:69:0.406:2	./.	0/1:36,29:31:65:0.446:2	0/1:47,29:32:76:0.382:2	./.	./.	./.	./.
chr8	10697276	rs72549111	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,41:32:98:0.418:2	./.	./.	./.	./.
chr8	10755512	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,4:33:112:0.036:2	./.	./.	./.	./.	./.	./.
chr8	10755515	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,6:27:147:0.041:2	0/1:163,6:27:169:0.036:2	./.	./.	./.
chr8	10755518	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:32:73:0.055:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	10755519	.	A	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:90,7:28:98:0.072:2	./.	./.	./.	./.	./.	0/1:151,6:31:158:0.038:2	0/1:160,11:28:171:0.064:2	./.	./.	./.
chr8	10755654	rs142109502	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,11:31:43:0.256:2	./.
chr8	11162496	rs2164272	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,95:33:95:1.00:2	0/1:0,59:33:59:1.00:2	0/1:13,7:33:20:0.350:2	./.	0/1:62,40:33:102:0.392:2	./.	0/1:56,43:32:99:0.434:2	./.	./.	0/1:45,53:34:98:0.541:2	0/1:1,120:33:122:0.992:2
chr8	11188676	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:32:53:0.075:2	./.
chr8	11188703	rs4841520	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,29:30:51:0.569:2	./.	./.	./.	0/1:12,30:32:42:0.714:2	./.	./.	./.
chr8	11188743	rs13260331	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,42:29:44:0.955:2	0/1:1,32:31:33:0.970:2	0/1:2,3:30:5:0.600:2	./.	0/1:23,26:30:49:0.531:2	./.	0/1:20,20:30:40:0.500:2	./.	./.	./.	0/1:4,41:29:45:0.911:2
chr8	11188752	rs6990563	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,48:31:50:0.960:2	0/1:1,30:31:31:0.968:2	0/1:2,3:31:5:0.600:2	./.	0/1:24,24:31:48:0.500:2	./.	0/1:24,26:31:50:0.520:2	./.	./.	0/1:16,14:32:30:0.467:2	0/1:6,45:30:51:0.882:2
chr8	11188806	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,5:32:116:0.043:2	./.	0/1:111,8:28:119:0.067:2
chr8	11188832	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,5:31:196:0.026:2	./.	./.	./.	./.
chr8	11188884	rs141484171	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,8:32:160:0.050:2	0/1:180,5:30:185:0.027:2	./.	./.	./.	./.
chr8	11188922	rs76944947	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:148,5:30:153:0.033:2	0/1:149,8:30:157:0.051:2	0/1:173,13:29:186:0.070:2	./.	0/1:163,18:29:181:0.099:2	./.	0/1:109,7:28:116:0.060:2
chr8	11188956	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,5:31:157:0.032:2	./.	./.	0/1:169,6:31:176:0.034:2	./.	./.
chr8	11189184	rs115295428	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	./.	./.	./.	./.	0/1:57,4:33:61:0.066:2	./.	0/1:78,6:32:86:0.071:2
chr8	11189215	rs151245433	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	./.	./.	./.	0/1:62,5:32:67:0.075:2	./.	0/1:75,7:27:82:0.085:2
chr8	11189316	rs2736269	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,2:34:2:1.00:2	0/1:0,41:33:41:1.00:2	0/1:38,16:32:54:0.296:2	0/1:0,41:32:41:1.00:2	0/1:47,12:32:59:0.203:2	0/1:0,39:33:39:1.00:2	./.	0/1:22,14:33:37:0.389:2	0/1:0,42:32:42:1.00:2
chr8	11189344	rs2572403	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,31:28:69:0.449:2	./.	./.	./.	0/1:50,28:27:78:0.359:2	./.	./.	./.
chr8	11189402	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:32:152:0.026:2
chr8	11189488	rs12681987	T	C,G	.	PASS	AC=3,1;AF=0.250,0.083;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9	GT:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0/1:31:24:0.304:2	0/1:29:165:0.426:2	./.	0/2:30:178:0.034:2	./.	0/1:29:176:0.417:2	./.	./.	./.
chr8	11189529	rs62488716	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:70,4:31:74:0.054:2	0/1:51,5:30:56:0.089:2	./.	./.	0/1:165,19:30:185:0.103:2	0/1:164,11:29:175:0.063:2	0/1:159,11:31:170:0.065:2	./.	./.	0/1:88,7:32:95:0.074:2	0/1:77,7:31:85:0.083:2
chr8	11189533	rs74495029	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,71:32:145:0.490:2	./.	./.	./.	0/1:105,71:32:176:0.403:2	./.	./.	./.
chr8	11189535	rs12681991	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:3,70:33:73:0.959:2	0/1:1,53:33:54:0.981:2	0/1:15,7:32:22:0.318:2	./.	0/1:119,55:32:174:0.316:2	0/1:162,11:32:173:0.064:2	0/1:109,51:32:160:0.319:2	./.	./.	0/1:58,37:33:95:0.389:2	0/1:0,82:32:82:1.00:2
chr8	11189591	rs62488717	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,13:32:55:0.236:2	0/1:38,7:32:45:0.156:2	./.	0/1:82,8:32:90:0.089:2	0/1:71,42:32:113:0.372:2	0/1:87,21:31:108:0.194:2	0/1:60,29:32:89:0.326:2	./.	./.	0/1:54,19:32:73:0.260:2	0/1:49,19:33:68:0.279:2
chr8	11189681	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:33:11:0.273:2	0/1:10,3:32:13:0.231:2	./.	0/1:16,9:31:25:0.360:2	./.	./.	./.	0/1:18,4:32:22:0.182:2
chr8	11282047	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:34:132:0.030:2	./.
chr8	11301753	rs3021513	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:31:18:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,24:29:24:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,17:28:17:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,14:31:14:1.00:2
chr8	11405576	rs55758736	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,51:31:160:0.319:2	./.	./.	./.	./.
chr8	11406593	rs3816668	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,57:32:96:0.594:2	0/1:38,27:33:65:0.415:2	0/1:9,7:28:16:0.438:2	0/1:69,53:32:122:0.434:2	0/1:67,46:31:113:0.407:2	0/1:0,128:32:128:1.00:2	0/1:54,69:33:123:0.561:2	0/1:0,157:32:157:1.00:2	0/1:75,69:33:145:0.479:2	0/1:0,98:33:98:1.00:2	0/1:2,141:33:143:0.986:2
chr8	11414237	rs2306234	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,12:30:12:1.00:2	0/1:0,89:33:89:1.00:2	0/1:0,103:32:103:1.00:2	0/1:0,98:32:98:1.00:2	0/1:2,132:32:134:0.985:2	0/1:70,54:32:124:0.435:2	0/1:0,100:33:100:1.00:2	0/1:47,47:32:94:0.500:2	./.
chr8	11614575	rs3729856	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,64:30:175:0.366:2	./.	./.	./.	./.	./.	./.	./.
chr8	11615894	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:122,4:33:126:0.032:2	./.	./.	./.	./.	./.	./.
chr8	11637234	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,4:33:14:0.286:2	./.	./.	./.
chr8	11640784	rs8191642	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:100,81:31:181:0.448:2	0/1:69,66:30:135:0.489:2	./.	./.	./.	./.	0/1:108,84:31:192:0.438:2	./.	0/1:111,84:32:195:0.431:2	./.	./.
chr8	11660362	rs1047643	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:29,17:30:46:0.370:2	0/1:14,15:31:29:0.517:2	./.	./.	./.	./.	./.	./.	./.	0/1:26,23:31:49:0.469:2	./.
chr8	11660365	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,43:30:87:0.494:2	./.	./.	./.	./.
chr8	11660409	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,4:31:98:0.041:2	./.	./.	./.	./.	./.	./.
chr8	11666337	rs4731	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,59:33:103:0.573:2	./.	0/1:36,47:33:83:0.566:2	./.	./.	0/1:61,55:34:116:0.474:2	./.	./.
chr8	11667179	rs8417	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,26:33:58:0.448:2	0/1:21,9:31:30:0.300:2	./.	./.	./.	0/1:24,26:30:50:0.520:2	./.	./.	./.	./.	./.
chr8	11683653	rs904011	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,103:33:103:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,104:33:104:1.00:2	0/1:0,95:33:95:1.00:2	0/1:0,92:34:92:1.00:2	0/1:0,82:33:82:1.00:2	0/1:0,99:32:99:1.00:2
chr8	11689119	rs9205	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,44:32:91:0.484:2	0/1:28,17:33:45:0.378:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	11706581	rs13332	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,62:33:63:0.984:2	0/1:0,23:32:23:1.00:2	0/1:0,4:31:4:1.00:2	./.	0/1:109,81:32:190:0.426:2	0/1:48,50:32:98:0.510:2	0/1:4,139:33:143:0.972:2	0/1:0,116:33:116:1.00:2	0/1:58,53:34:111:0.477:2	0/1:26,19:32:45:0.422:2	./.
chr8	11710174	rs1803250	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,17:32:43:0.395:2	./.
chr8	11710888	rs12338	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:33,30:28:63:0.476:2	0/1:11,22:28:33:0.667:2	0/1:0,5:32:5:1.00:2	./.	./.	./.	./.	0/1:35,37:28:72:0.514:2	0/1:35,40:29:75:0.533:2	0/1:31,34:29:65:0.523:2	./.
chr8	11831557	rs73538682	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,5:27:15:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	11832079	rs10108075	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:34:48:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,4:33:4:1.00:2	0/1:30,25:33:55:0.455:2	0/1:12,22:31:34:0.647:2	./.	./.	0/1:21,39:33:60:0.650:2	0/1:1,85:34:86:0.988:2	./.	0/1:0,60:33:60:1.00:2
chr8	11921922	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,66:33:139:0.475:2	./.	./.	./.	./.
chr8	11970182	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:3,5:34:8:0.625:2	./.	./.	0/1:17,3:32:20:0.150:2	./.	./.	./.	0/1:16,3:34:19:0.158:2	./.	./.	0/1:43,8:33:51:0.157:2
chr8	11970195	rs201488691	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,5:32:5:1.00:2	./.	0/1:0,2:30:2:1.00:2	0/1:1,17:29:18:0.944:2	./.	0/1:18,13:30:31:0.419:2	0/1:34,4:30:38:0.105:2	0/1:15,3:32:18:0.167:2	0/1:52,15:32:67:0.224:2	./.	0/1:41,4:31:45:0.089:2
chr8	11970292	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,13:31:32:0.406:2	./.	0/1:18,15:32:33:0.455:2	./.	./.	0/1:48,25:33:73:0.342:2	./.	./.
chr8	11970320	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,4:28:25:0.160:2	./.	./.	0/1:20,5:33:25:0.200:2	0/1:20,6:30:26:0.231:2	0/1:28,5:31:33:0.152:2	0/1:63,7:32:70:0.100:2	0/1:42,6:31:48:0.125:2	0/1:69,4:33:73:0.055:2	0/1:36,6:34:42:0.143:2	0/1:62,11:33:73:0.151:2
chr8	11970380	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,5:32:77:0.065:2	./.	./.
chr8	11970521	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:19,6:29:25:0.240:2	./.	./.	0/1:27,4:32:31:0.129:2	./.	./.	./.	./.	./.	./.	0/1:151,9:33:160:0.056:2
chr8	11970544	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,3:33:23:0.130:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	11970652	rs200401540	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	0/1:0,5:31:5:1.00:2	0/1:8,7:32:15:0.467:2	./.	0/1:20,9:32:29:0.310:2	./.	0/1:0,13:32:13:1.00:2
chr8	11994736	rs201221900	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,5:32:192:0.026:2	./.	./.	./.	./.	./.
chr8	11994863	rs373156591	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	0/1:57,8:31:65:0.123:2	./.	./.	./.	./.
chr8	11994886	rs76415856	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,5:30:33:0.152:2	0/1:57,8:26:65:0.123:2	./.	0/1:47,11:28:58:0.190:2	./.	./.	./.	./.
chr8	11994950	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,5:31:14:0.357:2	./.	./.	./.	./.	./.	0/1:24,3:32:27:0.111:2	./.
chr8	11994951	rs200695704	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,5:33:14:0.357:2	./.	./.	./.	./.	./.	0/1:24,3:33:27:0.111:2	./.
chr8	11994957	rs12543578	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:31:9:1.00:2	0/1:7,7:31:14:0.500:2	0/1:8,13:29:21:0.619:2	0/1:9,19:32:28:0.679:2	./.	0/1:5,12:32:17:0.706:2	0/1:7,4:34:11:0.364:2	0/1:9,15:33:24:0.625:2	./.
chr8	11995062	rs75807755	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,25:29:52:0.481:2	./.	./.	./.	0/1:27,23:28:50:0.460:2
chr8	11995274	rs71511006	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,4:32:4:1.00:2	0/1:0,28:31:28:1.00:2	0/1:23,86:31:109:0.789:2	0/1:49,88:31:137:0.642:2	0/1:12,130:31:142:0.915:2	0/1:82,73:32:155:0.471:2	0/1:84,65:31:149:0.436:2	0/1:89,73:32:162:0.451:2	0/1:52,95:32:147:0.646:2	0/1:5,178:32:183:0.973:2
chr8	11995276	rs372605534	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,4:31:112:0.036:2	./.	./.	./.	./.	./.	./.	0/1:183,5:33:188:0.027:2
chr8	11995383	rs201233406	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,15:32:58:0.259:2	./.	./.	./.	./.	./.	./.
chr8	11995400	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,3:30:29:0.103:2	./.	./.	./.
chr8	11995433	rs75180221	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:28:15:0.400:2	./.	./.	./.	0/1:15,5:29:20:0.250:2	./.	./.	./.
chr8	11995439	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,3:30:14:0.214:2	./.	./.	./.	./.	./.	./.	./.
chr8	11995457	rs201994056	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	0/1:14,4:32:18:0.222:2	./.	./.	0/1:21,3:33:24:0.125:2
chr8	11995484	rs74614551	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:33:7:0.714:2	./.	0/1:12,13:31:25:0.520:2	./.	0/1:7,7:32:14:0.500:2	0/1:1,11:33:12:0.917:2	0/1:5,10:32:15:0.667:2	./.
chr8	11995504	rs200122579	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	11995733	rs200401854	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,2:35:5:0.400:2	./.	./.	./.
chr8	11995785	rs202050503	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:32:8:0.500:2
chr8	11995823	rs201647724	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,6:32:34:0.176:2	./.	./.	./.	./.	./.
chr8	11995850	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,6:33:21:0.286:2	./.	./.	./.	./.	./.	./.	./.
chr8	11996074	rs142023572	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,6:29:66:0.091:2	./.	./.	./.	./.
chr8	11996086	rs75476700	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,21:31:46:0.457:2	./.	./.	./.	0/1:21,14:32:35:0.400:2
chr8	11996136	rs199901434	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,4:31:20:0.200:2	./.	./.	./.
chr8	11996150	rs74324142	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.	./.	./.	0/1:10,8:29:18:0.444:2
chr8	12041190	rs146245204	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,181:32:182:0.995:2	0/1:0,182:32:182:1.00:2	0/1:1,139:32:140:0.993:2	0/1:32,148:33:180:0.822:2	0/1:62,137:32:199:0.688:2	0/1:1,188:32:189:0.995:2	0/1:162,31:34:193:0.161:2	0/1:83,112:33:195:0.574:2	0/1:133,60:33:193:0.311:2	0/1:50,148:33:198:0.747:2	0/1:119,73:33:193:0.380:2
chr8	12041208	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:156,23:28:179:0.128:2	./.	./.	./.	./.	./.	./.	./.
chr8	12041209	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:158,23:31:181:0.127:2	./.	./.	./.	./.	./.	./.	./.
chr8	12041211	rs199715735	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:119,39:31:158:0.247:2	./.	./.	0/1:143,54:31:197:0.274:2	./.	./.	./.	./.	./.
chr8	12041212	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:161,23:32:184:0.125:2	./.	./.	./.	./.	./.	./.	./.
chr8	12044217	rs201723492	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:186,5:32:191:0.026:2	./.	0/1:54,16:33:70:0.229:2	0/1:114,46:34:160:0.288:2	0/1:128,67:33:195:0.344:2	0/1:84,99:33:183:0.541:2	./.	0/1:150,44:33:194:0.227:2	0/1:133,51:34:185:0.277:2	0/1:110,76:33:186:0.409:2	./.
chr8	12044248	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:128,8:29:136:0.059:2	./.	./.	./.	./.	./.	./.	./.
chr8	12044262	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,70:32:179:0.391:2	./.	./.	./.	./.	./.
chr8	12044307	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,55:31:158:0.348:2	./.	./.	./.	./.	./.
chr8	12044328	rs138175362	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,71:26:72:0.986:2	0/1:0,44:27:44:1.00:2	0/1:0,20:28:20:1.00:2	0/1:1,95:27:96:0.990:2	0/1:42,83:26:125:0.664:2	0/1:1,117:27:118:0.992:2	0/1:107,33:28:142:0.236:2	0/1:56,61:27:117:0.521:2	0/1:104,44:27:148:0.297:2	0/1:44,76:27:120:0.633:2	0/1:88,57:27:145:0.393:2
chr8	12168495	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,52:33:134:0.388:2	./.	./.	./.	./.
chr8	12168507	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,8:30:195:0.041:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	12283440	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:175,6:28:181:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr8	12283473	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,180:33:181:0.994:2	0/1:1,182:32:183:0.995:2	0/1:0,117:32:117:1.00:2	0/1:34,141:33:175:0.806:2	0/1:70,125:32:195:0.641:2	0/1:2,184:32:186:0.989:2	0/1:172,22:32:194:0.113:2	0/1:78,114:33:192:0.594:2	0/1:132,62:33:194:0.320:2	0/1:65,132:33:197:0.670:2	0/1:121,71:33:192:0.370:2
chr8	12283491	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:157,21:27:178:0.118:2	./.	./.	./.	./.	./.	./.	./.
chr8	12283492	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:157,21:31:178:0.118:2	./.	./.	./.	./.	./.	./.	./.
chr8	12283494	rs200588268	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,23:32:119:0.193:2	./.	./.	0/1:136,55:32:191:0.288:2	./.	./.	./.	./.	./.
chr8	12283495	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:160,21:32:181:0.116:2	./.	./.	./.	./.	./.	./.	./.
chr8	12286498	.	G	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:63,10:33:73:0.137:2	0/1:99,49:33:148:0.331:2	0/1:122,70:32:192:0.365:2	0/1:85,96:33:181:0.530:2	./.	0/1:149,40:33:190:0.212:2	0/1:146,42:34:188:0.223:2	0/1:115,80:33:195:0.410:2	./.
chr8	12286529	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:117,6:27:123:0.049:2	./.	./.	./.	./.	./.	./.	./.
chr8	12286543	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,75:32:186:0.405:2	./.	./.	./.	./.	./.
chr8	12286588	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,43:32:125:0.344:2	./.	./.	./.	./.	./.
chr8	12286609	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,53:27:55:0.964:2	0/1:3,54:27:58:0.947:2	0/1:0,11:26:11:1.00:2	0/1:3,73:27:76:0.961:2	0/1:54,66:27:120:0.550:2	0/1:2,83:27:85:0.976:2	0/1:142,26:27:169:0.155:2	0/1:44,69:27:113:0.611:2	0/1:94,32:28:126:0.254:2	0/1:33,65:26:98:0.663:2	0/1:75,58:27:133:0.436:2
chr8	12286623	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:99,4:33:103:0.039:2	./.	./.	./.	./.	./.	./.
chr8	12287878	rs200979392	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,3:30:20:0.150:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	12287940	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,53:30:163:0.325:2	./.	./.	./.	./.	./.
chr8	12287953	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:32:132:0.030:2	./.	./.	./.	./.
chr8	12287957	rs148629503	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,32:31:128:0.252:2	0/1:85,48:31:134:0.361:2	./.	0/1:105,29:32:134:0.216:2	./.
chr8	12586529	rs184936403	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,8:32:68:0.118:2	./.	./.	./.	./.	./.	./.
chr8	12589352	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,6:33:178:0.034:2	./.	./.
chr8	12600720	rs1139354	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:25,32:33:57:0.561:2	0/1:10,28:33:38:0.737:2	./.	./.	./.	./.	./.	0/1:20,11:33:31:0.355:2	./.	./.	./.
chr8	12878637	rs528255	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:29:85:1.00:2	0/1:1,46:30:47:0.979:2	0/1:0,11:31:11:1.00:2	0/1:0,85:30:85:1.00:2	0/1:0,61:29:61:1.00:2	0/1:0,99:29:99:1.00:2	0/1:0,75:30:75:1.00:2	0/1:0,79:29:79:1.00:2	0/1:0,103:30:104:1.00:2	0/1:0,58:30:58:1.00:2	0/1:0,117:29:118:1.00:2
chr8	12878677	rs622106	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:32:76:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,8:32:8:1.00:2	0/1:34,28:32:62:0.452:2	0/1:0,62:32:62:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,59:32:59:1.00:2	0/1:3,61:32:64:0.953:2	0/1:1,68:33:69:0.986:2	0/1:0,38:32:38:1.00:2	0/1:1,85:32:86:0.988:2
chr8	12878807	rs3739310	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:32:74:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,3:33:3:1.00:2	0/1:50,38:32:88:0.432:2	0/1:0,70:31:70:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,114:32:114:1.00:2	0/1:2,80:33:83:0.976:2	0/1:1,60:32:61:0.984:2	0/1:78,43:32:121:0.355:2
chr8	12878830	rs3739309	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,36:32:86:0.424:2	0/1:29,23:31:52:0.442:2	0/1:0,4:31:4:1.00:2	0/1:52,38:30:90:0.422:2	0/1:0,63:31:63:1.00:2	0/1:0,87:31:87:1.00:2	0/1:51,50:31:101:0.495:2	0/1:0,96:31:96:1.00:2	./.	0/1:1,59:30:60:0.983:2	0/1:79,48:32:127:0.378:2
chr8	12878843	rs505480	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,75:31:127:0.591:2
chr8	12878982	rs3739308	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,29:32:54:0.537:2	./.	./.	./.	./.	./.	./.	./.
chr8	12879062	rs503550	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:33:80:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,7:32:7:1.00:2	0/1:49,43:33:92:0.467:2	0/1:0,59:32:59:1.00:2	0/1:0,75:32:75:1.00:2	0/1:1,44:33:45:0.978:2	0/1:2,77:33:79:0.975:2	0/1:0,73:34:73:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,92:33:92:1.00:2
chr8	12879099	rs502882	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,83:33:83:1.00:2	0/1:1,32:33:33:0.970:2	0/1:0,8:32:8:1.00:2	0/1:51,52:33:103:0.505:2	0/1:1,47:32:48:0.979:2	0/1:0,88:32:88:1.00:2	0/1:1,47:32:48:0.979:2	0/1:3,77:33:80:0.963:2	0/1:0,84:34:84:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,98:33:98:1.00:2
chr8	12879198	rs34995506	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,18:31:32:0.563:2	./.	./.	./.	./.	./.	./.	./.
chr8	12879334	rs608909	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:31:43:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,6:30:6:1.00:2	0/1:42,26:30:68:0.382:2	0/1:0,41:30:41:1.00:2	0/1:0,57:29:57:1.00:2	0/1:1,38:32:39:0.974:2	0/1:0,52:30:52:1.00:2	0/1:2,68:30:70:0.971:2	0/1:0,45:30:45:1.00:2	0/1:0,57:30:57:1.00:2
chr8	12879539	rs608052	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:32:94:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,9:30:9:1.00:2	0/1:65,38:32:103:0.369:2	0/1:0,66:32:66:1.00:2	0/1:0,98:32:98:1.00:2	0/1:3,71:32:74:0.959:2	0/1:3,95:32:98:0.969:2	0/1:0,118:33:118:1.00:2	0/1:1,71:32:72:0.986:2	0/1:0,100:33:100:1.00:2
chr8	12879600	rs498852	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:32:96:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,84:31:84:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,100:31:101:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,94:31:94:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,105:32:105:1.00:2
chr8	12879660	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:34:140:0.029:2
chr8	12879707	rs476023	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:32:65:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,12:32:12:1.00:2	0/1:50,30:32:80:0.375:2	0/1:0,48:32:48:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,34:32:34:1.00:2	0/1:1,63:32:64:0.984:2	0/1:1,75:33:76:0.987:2	0/1:0,50:32:50:1.00:2	0/1:0,110:33:110:1.00:2
chr8	12879777	rs475181	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:32:28:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,2:31:2:1.00:2	0/1:23,19:31:42:0.452:2	0/1:0,25:30:25:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,14:31:14:1.00:2	0/1:1,24:31:25:0.960:2	0/1:1,26:32:27:0.963:2	0/1:0,21:31:21:1.00:2	0/1:0,54:32:54:1.00:2
chr8	12879940	rs3739303	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,16:31:37:0.432:2	./.	./.	./.	./.	./.	./.	./.
chr8	12880105	rs472347	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:32:69:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,7:32:7:1.00:2	0/1:48,50:32:98:0.510:2	0/1:0,45:31:45:1.00:2	0/1:0,81:31:81:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,128:33:128:1.00:2
chr8	12880141	rs62486882	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,40:33:90:0.444:2	./.	./.	./.	./.	./.	./.	./.
chr8	12880277	rs1829422	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,8:33:8:1.00:2	0/1:0,4:34:4:1.00:2	./.	0/1:2,2:34:4:0.500:2	0/1:0,5:30:5:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,6:32:6:1.00:2	./.
chr8	12880521	rs579024	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:32:69:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,14:32:14:1.00:2	0/1:71,58:32:129:0.450:2	0/1:0,71:31:71:1.00:2	0/1:0,85:31:85:1.00:2	0/1:1,55:32:56:0.982:2	0/1:0,97:32:97:1.00:2	0/1:0,107:33:107:1.00:2	0/1:1,95:32:96:0.990:2	0/1:0,123:32:123:1.00:2
chr8	12880538	rs75221088	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,82:32:167:0.491:2	./.	./.	./.	./.	./.	./.	./.
chr8	12880628	rs578076	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,43:33:93:0.462:2
chr8	12881038	rs553472	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:33:46:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,2:32:2:1.00:2	0/1:1,33:33:34:0.971:2	0/1:0,43:32:43:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,51:34:51:1.00:2	0/1:0,36:32:37:1.00:2	0/1:0,71:33:71:1.00:2
chr8	12881225	rs78546775	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,4:32:18:0.222:2	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.
chr8	12881317	rs10088700	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,8:32:13:0.615:2	0/1:6,4:32:10:0.400:2	0/1:0,5:32:5:1.00:2	0/1:7,4:32:11:0.364:2	0/1:0,14:32:14:1.00:2	0/1:10,7:31:17:0.412:2	0/1:7,3:29:10:0.300:2	0/1:5,5:33:10:0.500:2	./.	0/1:0,16:31:16:1.00:2	0/1:4,10:32:14:0.714:2
chr8	12881550	rs33910775	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,8:18:19:0.421:2	0/1:5,7:13:12:0.583:2	0/1:8,5:24:13:0.385:2	./.	./.	0/1:9,4:21:13:0.308:2	0/1:7,5:15:12:0.417:2	./.
chr8	12881557	rs527085	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,6:29:17:0.353:2
chr8	12881642	rs35654963	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	0/1:2,3:30:5:0.600:2	./.	./.	0/1:0,2:34:2:1.00:2	0/1:0,3:28:3:1.00:2
chr8	12881643	rs184223946	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	0/1:2,3:29:5:0.600:2	./.	./.	0/1:0,2:33:2:1.00:2	0/1:0,3:30:3:1.00:2
chr8	12881832	rs74367119	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:10,5:31:15:0.333:2	0/1:5,5:32:10:0.500:2	./.	./.	./.	./.	0/1:2,3:34:5:0.600:2	./.	0/1:2,16:33:18:0.889:2	./.	./.
chr8	12881843	rs13268982	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,8:30:14:0.571:2	0/1:6,5:29:11:0.455:2	./.	0/1:4,10:32:14:0.714:2	0/1:0,15:31:15:1.00:2	0/1:0,19:31:19:1.00:2	./.	0/1:0,14:32:14:1.00:2	./.	0/1:0,14:31:14:1.00:2	0/1:21,10:33:31:0.323:2
chr8	12881904	rs67049213	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:25,8:32:33:0.242:2	0/1:15,11:32:26:0.423:2	./.	./.	./.	./.	0/1:12,6:30:18:0.333:2	./.	0/1:0,33:33:33:1.00:2	./.	./.
chr8	12881940	rs523999	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:31:54:1.00:2	0/1:0,37:31:37:1.00:2	0/1:1,8:31:9:0.889:2	0/1:0,61:31:61:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,47:33:47:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,56:31:56:1.00:2
chr8	12882073	rs656850	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:32:35:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,47:33:47:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,51:32:51:1.00:2
chr8	12882277	rs3739301	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,25:31:48:0.521:2	0/1:11,12:31:23:0.522:2	0/1:0,3:28:3:1.00:2	0/1:30,14:30:44:0.318:2	0/1:12,12:29:24:0.500:2	0/1:1,37:30:38:0.974:2	0/1:15,9:30:24:0.375:2	0/1:1,30:31:31:0.968:2	0/1:22,23:32:45:0.511:2	0/1:0,31:31:31:1.00:2	0/1:37,29:31:66:0.439:2
chr8	12882292	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,3:32:33:0.091:2	./.	./.	./.
chr8	12882634	rs28667764	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,35:30:76:0.461:2	0/1:25,22:30:47:0.468:2	./.	./.	./.	./.	./.	./.
chr8	12882687	rs530515	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,41:33:75:0.547:2	0/1:21,17:33:38:0.447:2	0/1:0,7:32:7:1.00:2	0/1:29,41:33:70:0.586:2	0/1:20,16:31:36:0.444:2	0/1:1,60:32:61:0.984:2	0/1:29,25:34:54:0.463:2	0/1:0,60:33:60:1.00:2	0/1:45,49:34:94:0.521:2	0/1:0,65:32:65:1.00:2	0/1:0,85:33:85:1.00:2
chr8	12882914	rs2460332	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:33:7:0.429:2
chr8	12883274	rs1519149	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,15:33:49:0.306:2	./.	./.	0/1:50,43:31:93:0.462:2
chr8	12883855	rs2954194	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,11:33:11:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,4:35:4:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,17:34:17:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,16:34:16:1.00:2
chr8	12883878	rs2954195	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:36:3:0.667:2	./.	./.	./.	./.	0/1:13,6:33:19:0.316:2	./.	./.	0/1:11,6:34:17:0.353:2
chr8	12884103	rs665995	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,4:31:12:0.333:2	./.	./.	./.	./.	0/1:27,22:32:49:0.449:2	./.	./.	0/1:28,15:32:43:0.349:2
chr8	12884124	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:33:60:0.067:2	./.
chr8	12884135	rs665953	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:33:66:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,37:33:37:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,66:34:66:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,58:32:58:1.00:2
chr8	12884138	rs28721344	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,42:31:79:0.532:2	0/1:25,26:31:51:0.510:2	./.	./.	./.	0/1:45,26:33:71:0.366:2	./.	./.
chr8	12884224	rs495609	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:30:5:0.600:2	./.	./.	./.	./.	0/1:40,17:28:57:0.298:2	./.	./.	0/1:36,27:29:63:0.429:2
chr8	12884304	rs141389322	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,13:32:31:0.419:2	./.	./.	./.	./.	./.	./.
chr8	12884460	rs4831862	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,13:31:42:0.310:2	0/1:6,13:32:19:0.684:2	0/1:1,6:31:7:0.857:2	0/1:14,13:32:27:0.481:2	0/1:7,5:33:12:0.417:2	0/1:18,19:33:37:0.514:2	0/1:15,5:32:20:0.250:2	./.	0/1:37,16:33:53:0.302:2	0/1:0,23:32:23:1.00:2	0/1:33,16:33:49:0.327:2
chr8	12884478	rs62486883	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,17:33:33:0.515:2	0/1:10,9:33:19:0.474:2	./.	./.	./.	./.	./.	./.
chr8	12884574	rs529361	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:33:7:0.571:2	./.	./.	./.	./.	0/1:17,16:33:33:0.485:2	./.	./.	0/1:33,43:32:76:0.566:2
chr8	12884804	rs579253	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,32:31:53:0.604:2	./.	./.	0/1:30,18:33:48:0.375:2
chr8	12884920	rs578397	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:27,18:32:45:0.400:2	0/1:17,6:32:23:0.261:2	./.	./.	./.	./.	0/1:36,21:30:57:0.368:2	0/1:29,17:32:46:0.370:2	0/1:37,31:33:69:0.456:2	./.	0/1:30,34:32:65:0.531:2
chr8	12885037	rs577463	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:33:43:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,61:32:61:1.00:2
chr8	12885240	rs502678	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:32:30:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,36:33:36:1.00:2	0/1:0,59:33:59:1.00:2
chr8	12885389	rs12545748	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:27,12:31:39:0.308:2	0/1:22,9:31:31:0.290:2	./.	./.	./.	./.	0/1:18,10:31:28:0.357:2	./.	0/1:29,8:31:37:0.216:2	./.	./.
chr8	12885465	rs573131	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:32:30:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,50:33:50:1.00:2
chr8	12885686	rs498216	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,106:30:106:1.00:2	0/1:0,55:29:55:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,102:30:102:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,128:30:128:1.00:2	0/1:2,92:30:94:0.979:2	0/1:0,162:30:162:1.00:2	0/1:0,113:30:113:1.00:2	0/1:0,87:29:87:1.00:2	0/1:0,138:30:138:1.00:2
chr8	12885738	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,31:29:62:0.500:2	./.	./.	./.	./.	./.
chr8	12885803	rs637756	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,25:32:28:0.893:2	./.	./.	./.
chr8	12886083	rs34188737	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	./.	./.	./.	0/1:4,5:25:9:0.556:2	0/1:4,7:28:11:0.636:2	./.	./.	./.	0/1:5,3:30:8:0.375:2
chr8	12886085	rs199746862	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,4:30:10:0.400:2	./.	./.	./.	0/1:6,2:36:8:0.250:2
chr8	12886088	rs13268854	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:1,3:26:4:0.750:2	./.	0/1:2,3:31:5:0.600:2	./.	0/1:5,3:32:8:0.375:2	0/1:7,3:30:10:0.300:2	./.	./.	./.	0/1:3,5:30:8:0.625:2
chr8	12886093	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:1,3:26:4:0.750:2	./.	0/1:1,3:27:4:0.750:2	./.	0/1:3,3:33:6:0.500:2	0/1:5,3:32:8:0.375:2	./.	./.	./.	0/1:2,5:33:7:0.714:2
chr8	12886427	rs73206624	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,26:31:66:0.394:2
chr8	12886470	rs2466258	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:32:31:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,61:31:61:1.00:2
chr8	12886491	rs73206625	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,17:33:59:0.288:2
chr8	12886669	rs35744372	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,22:34:48:0.458:2	0/1:20,15:32:35:0.429:2	0/1:0,4:31:4:1.00:2	0/1:22,26:32:48:0.542:2	./.	./.	0/1:16,17:32:33:0.515:2	0/1:2,39:32:41:0.951:2	./.	0/1:0,43:32:43:1.00:2	0/1:22,41:33:63:0.651:2
chr8	12886729	rs1850746	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,19:31:36:0.528:2	./.	./.	./.	./.	0/1:40,22:30:62:0.355:2
chr8	12886749	rs476541	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,24:32:56:0.429:2	0/1:13,20:32:33:0.606:2	./.	0/1:23,17:31:40:0.425:2	0/1:0,25:31:25:1.00:2	0/1:0,35:31:35:1.00:2	0/1:19,13:32:32:0.406:2	./.	0/1:0,50:32:50:1.00:2	./.	0/1:34,22:32:56:0.393:2
chr8	12886932	rs62486885	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,21:32:44:0.477:2	./.	./.
chr8	12887172	rs480286	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:27:3:1.00:2	./.	./.	./.
chr8	12947863	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:31:71:0.056:2
chr8	12952312	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:32:80:0.050:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	12956984	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:31:151:0.026:2	./.	./.	./.	./.
chr8	12957475	rs532841	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,9:32:18:0.500:2	./.	./.	0/1:14,12:31:26:0.462:2	0/1:13,6:31:19:0.316:2	0/1:15,12:31:27:0.444:2	0/1:1,15:31:16:0.938:2	0/1:14,14:31:28:0.500:2	0/1:15,5:30:20:0.250:2	0/1:0,18:32:18:1.00:2	0/1:0,9:30:9:1.00:2
chr8	12958025	rs3739298	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,11:25:24:0.458:2	0/1:5,7:31:12:0.583:2	0/1:1,3:31:4:0.750:2	0/1:14,10:31:24:0.417:2	./.	0/1:6,13:31:19:0.684:2	./.	0/1:6,12:30:18:0.667:2	0/1:8,9:28:17:0.529:2	./.	./.
chr8	12960281	rs2280335	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:108,53:29:161:0.329:2	0/1:73,50:29:123:0.407:2	0/1:12,9:29:21:0.429:2	0/1:97,98:29:195:0.503:2	0/1:85,57:29:142:0.401:2	0/1:102,93:29:195:0.477:2	0/1:3,153:29:156:0.981:2	0/1:108,89:30:197:0.452:2	0/1:110,83:31:193:0.430:2	0/1:0,198:29:198:1.00:2	0/1:1,187:30:188:0.995:2
chr8	12990422	rs10107321	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,7:26:24:0.292:2	0/1:14,3:28:17:0.176:2	./.	./.	0/1:37,20:28:57:0.351:2	0/1:25,8:28:33:0.242:2	./.	0/1:29,16:28:45:0.356:2	0/1:31,9:27:40:0.225:2	0/1:13,19:27:32:0.594:2	0/1:0,18:27:18:1.00:2
chr8	12990518	rs13275331	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,15:31:29:0.517:2	0/1:22,9:32:31:0.290:2	./.	./.	0/1:47,33:29:80:0.413:2	0/1:23,27:30:50:0.540:2	./.	0/1:42,30:30:72:0.417:2	0/1:32,26:30:58:0.448:2	0/1:11,13:30:24:0.542:2	0/1:0,24:28:25:1.00:2
chr8	13072177	rs3739300	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,25:31:50:0.500:2	0/1:10,15:32:25:0.600:2	0/1:0,4:32:4:1.00:2	0/1:29,25:31:54:0.463:2	./.	./.	0/1:0,46:31:46:1.00:2	0/1:35,31:31:66:0.470:2	0/1:42,38:33:80:0.475:2	0/1:32,22:31:54:0.407:2	./.
chr8	13356701	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:32:188:0.021:2	./.	./.	./.	./.	./.
chr8	13356802	rs3816747	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:31:66:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,45:30:45:1.00:2	0/1:1,33:30:34:0.971:2	0/1:0,39:31:39:1.00:2	0/1:0,40:31:40:1.00:2	0/1:1,38:32:39:0.974:2	0/1:0,41:31:41:1.00:2	0/1:27,26:31:53:0.491:2
chr8	13356818	rs11203494	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:30:56:1.00:2	0/1:0,35:28:35:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,44:29:44:1.00:2	0/1:0,41:28:41:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,28:28:28:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,42:30:42:1.00:2
chr8	13356819	rs11203495	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:29:56:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,2:27:2:1.00:2	0/1:0,44:29:44:1.00:2	0/1:0,41:29:41:1.00:2	0/1:0,33:29:33:1.00:2	0/1:1,28:30:29:0.966:2	0/1:0,28:29:28:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,33:30:33:1.00:2	0/1:22,20:30:42:0.476:2
chr8	13424583	rs13273355	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:32:43:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,4:30:4:1.00:2	0/1:24,30:32:54:0.556:2	0/1:0,37:31:37:1.00:2	0/1:30,16:31:46:0.348:2	0/1:0,45:31:45:1.00:2	0/1:0,40:31:40:1.00:2	0/1:29,29:31:58:0.500:2	0/1:26,23:31:49:0.469:2	0/1:0,49:31:49:1.00:2
chr8	13425353	rs11203497	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:32:62:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,52:31:53:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,61:32:61:1.00:2
chr8	13425657	rs71522356	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,13:31:31:0.419:2	0/1:13,9:31:22:0.409:2	./.	0/1:6,5:32:11:0.455:2	0/1:17,9:32:26:0.346:2	0/1:10,5:32:15:0.333:2	./.	./.	./.	./.	./.
chr8	13965679	rs190598778	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,34:30:60:0.567:2	./.	./.	./.	./.	./.	./.
chr8	15095076	rs74672231	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,7:30:12:0.583:2	./.	0/1:8,4:29:12:0.333:2	./.	./.	./.
chr8	15095085	rs4831331	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,7:25:17:0.412:2	0/1:3,4:29:7:0.571:2	./.	0/1:0,27:26:27:1.00:2	0/1:15,11:27:26:0.423:2	0/1:0,14:28:14:1.00:2	0/1:9,9:25:18:0.500:2	0/1:0,20:26:20:1.00:2	0/1:12,4:27:16:0.250:2	0/1:0,7:27:7:1.00:2	./.
chr8	15978063	rs4338104	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:29:24:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,44:29:44:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,33:29:33:1.00:2
chr8	16859440	rs17514894	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:32:5:1.00:2
chr8	16927250	rs17686794	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,29:31:51:0.569:2	./.	0/1:23,19:33:42:0.452:2	0/1:42,33:32:75:0.440:2	./.	./.	./.
chr8	17014317	rs375504005	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,16:30:34:0.471:2	./.	./.	./.	./.	./.	./.	./.
chr8	17067492	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,4:33:49:0.082:2	./.	./.	./.	./.	./.	./.
chr8	17090002	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.	./.
chr8	17100654	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:32:173:0.023:2	./.	./.	./.
chr8	17100660	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:33:166:0.024:2	./.	./.	./.
chr8	17100678	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:32:169:0.024:2	./.	./.	./.	./.	./.
chr8	17123422	rs140443698	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,6:31:87:0.069:2	./.	./.	./.
chr8	17123423	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,6:31:87:0.069:2	./.	./.	./.
chr8	17125768	rs11555738	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,8:32:33:0.242:2	0/1:24,25:32:49:0.510:2	./.	0/1:28,11:33:39:0.282:2	./.	./.	0/1:27,18:32:45:0.400:2
chr8	17142065	rs2285269	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,37:32:81:0.457:2	0/1:51,40:31:91:0.440:2	./.	0/1:55,41:32:96:0.427:2	./.	./.	0/1:77,47:32:124:0.379:2
chr8	17157677	rs3764796	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:29,36:31:65:0.554:2	0/1:17,23:31:40:0.575:2	./.	./.	./.	./.	0/1:32,22:31:54:0.407:2	./.	./.	./.	0/1:39,39:31:78:0.500:2
chr8	17163301	rs146868565	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,15:32:46:0.326:2
chr8	17166765	rs1548353	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,9:33:41:0.220:2	0/1:13,7:33:20:0.350:2	./.	0/1:9,21:33:30:0.700:2	0/1:15,3:36:18:0.167:2	0/1:0,17:32:17:1.00:2	0/1:20,9:33:29:0.310:2	0/1:17,5:32:22:0.227:2	0/1:21,8:34:29:0.276:2	0/1:0,23:33:23:1.00:2	0/1:25,9:31:34:0.265:2
chr8	17198953	rs4921756	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,29:34:67:0.433:2	./.	./.
chr8	17206588	rs2285291	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,11:31:33:0.333:2	./.	./.	./.
chr8	17218629	rs1024355	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,33:31:81:0.407:2	./.	0/1:27,41:30:69:0.603:2
chr8	17230644	rs7388581	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:30:57:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,68:30:68:1.00:2
chr8	17270763	rs2073694	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:32:10:1.00:2	0/1:46,8:32:55:0.148:2	0/1:22,34:32:56:0.607:2	0/1:0,72:32:72:1.00:2	0/1:37,35:32:72:0.486:2	0/1:69,35:32:104:0.337:2	0/1:32,27:33:59:0.458:2	0/1:32,16:33:48:0.333:2	0/1:0,44:32:44:1.00:2
chr8	17270764	rs76718364	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:42,17:31:59:0.288:2	0/1:19,13:31:32:0.406:2	./.	./.	0/1:36,22:29:58:0.379:2	./.	./.	./.	./.	0/1:17,30:29:47:0.638:2	./.
chr8	17270770	rs75437306	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:40,18:31:58:0.310:2	0/1:19,13:29:32:0.406:2	./.	./.	0/1:36,20:31:56:0.357:2	./.	./.	./.	./.	0/1:16,30:32:46:0.652:2	./.
chr8	17270787	rs67972978	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,35:32:35:1.00:2
chr8	17270818	rs146438584	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,18:30:32:0.563:2	./.	./.	./.
chr8	17270837	rs72607374	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,3:27:3:1.00:2	0/1:0,3:24:3:1.00:2	./.	./.	./.	./.	0/1:0,4:27:4:1.00:2
chr8	17396380	rs13259948	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,7:31:29:0.241:2	./.	./.	./.	0/1:21,18:31:39:0.462:2	./.	0/1:0,22:31:22:1.00:2	./.
chr8	17396415	rs13259978	G	C,A	.	PASS	AC=2,2;AF=0.167,0.167;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:BQ:DP:FA:SS	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/2:32:21:0.381:2	./.	0/1:32:38:0.447:2	0/2:31:51:0.529:2	0/1:32:19:1.00:2	./.
chr8	17409467	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,6:32:166:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	17419539	rs62622371	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,26:30:66:0.394:2	./.	./.	./.	./.	./.	./.	./.
chr8	17434834	rs138007273	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,50:32:108:0.463:2	./.	0/1:34,14:32:48:0.292:2
chr8	17486282	rs2229084	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:28:55:1.00:2	0/1:0,37:27:37:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,48:28:48:1.00:2	0/1:0,50:27:50:1.00:2	0/1:0,60:28:60:1.00:2	0/1:0,63:27:63:1.00:2	0/1:0,76:27:76:1.00:2	0/1:0,47:27:47:1.00:2	0/1:0,66:28:66:1.00:2	0/1:0,57:27:57:1.00:2
chr8	17500223	rs4705	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,73:30:73:1.00:2	0/1:1,28:30:29:0.966:2	0/1:7,4:32:11:0.364:2	./.	0/1:1,56:29:57:0.982:2	./.	0/1:1,58:30:59:0.983:2	0/1:0,68:30:68:1.00:2	0/1:0,56:31:57:1.00:2	0/1:0,56:30:56:1.00:2	0/1:38,26:29:64:0.406:2
chr8	17513414	rs12224	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,59:31:127:0.465:2	./.	./.	./.	./.	./.	./.	./.
chr8	17541943	rs61748836	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,61:33:111:0.550:2	./.	./.
chr8	17541952	rs192325056	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,37:32:64:0.578:2	./.	./.	./.	./.	./.	./.
chr8	17541999	rs2979792	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:17,13:26:30:0.433:2	0/1:16,18:27:34:0.529:2	0/1:7,4:26:11:0.364:2	./.	0/1:0,27:26:27:1.00:2	./.	0/1:23,27:29:50:0.540:2	0/1:1,59:28:60:0.983:2	0/1:43,23:29:66:0.348:2	0/1:27,19:29:46:0.413:2	0/1:29,31:28:60:0.517:2
chr8	17542013	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,25:32:43:0.581:2	./.	./.	./.	./.	./.	./.	./.
chr8	17611619	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:34:199:0.020:2	./.	./.	./.	./.
chr8	17611772	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,86:32:178:0.483:2
chr8	17611886	rs2979788	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,127:32:128:0.992:2	0/1:0,60:32:60:1.00:2	0/1:0,17:31:17:1.00:2	0/1:77,67:32:144:0.465:2	0/1:59,54:31:113:0.478:2	0/1:1,123:31:124:0.992:2	0/1:1,91:32:92:0.989:2	0/1:3,132:31:135:0.978:2	0/1:0,138:32:138:1.00:2	0/1:65,52:32:117:0.444:2	0/1:1,169:32:170:0.994:2
chr8	17611959	rs17690844	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,48:33:98:0.490:2	./.
chr8	17612456	rs11203910	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,122:32:122:1.00:2	0/1:0,77:33:77:1.00:2	0/1:0,20:32:20:1.00:2	0/1:1,147:32:148:0.993:2	0/1:0,68:32:68:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,110:32:110:1.00:2	0/1:0,134:32:134:1.00:2	0/1:0,146:33:146:1.00:2	0/1:64,24:32:88:0.273:2	0/1:0,135:32:135:1.00:2
chr8	17612639	rs209568	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,27:32:63:0.435:2	./.	0/1:23,23:33:46:0.500:2	0/1:18,28:33:46:0.609:2	./.	0/1:24,30:33:54:0.556:2
chr8	17612686	rs61733697	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,36:33:81:0.444:2
chr8	17612694	rs73206291	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,25:28:68:0.368:2	./.	./.	./.	./.	./.	./.
chr8	17612846	rs3739408	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,70:32:150:0.467:2
chr8	17612875	rs3739407	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:31:92:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,11:29:11:1.00:2	0/1:56,57:30:113:0.504:2	0/1:0,101:30:101:1.00:2	0/1:0,124:29:124:1.00:2	0/1:4,124:30:128:0.969:2	0/1:1,126:30:127:0.992:2	0/1:0,121:30:121:1.00:2	0/1:62,54:31:117:0.466:2	0/1:58,63:29:121:0.521:2
chr8	17613225	rs370494956	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:33:101:0.040:2	./.	./.	./.	./.	./.
chr8	17613230	rs181601359	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,22:33:62:0.355:2	./.	./.	./.	./.
chr8	17731961	rs2653406	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,30:32:43:0.698:2	./.	./.	./.	./.	./.	./.	./.
chr8	17739538	rs3739406	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,75:30:76:0.987:2	0/1:0,48:29:48:1.00:2	0/1:0,14:30:14:1.00:2	0/1:56,42:29:98:0.429:2	0/1:0,76:30:76:1.00:2	0/1:0,93:29:93:1.00:2	0/1:77,43:29:120:0.358:2	0/1:54,50:30:104:0.481:2	0/1:32,62:31:94:0.660:2	0/1:0,77:30:77:1.00:2	0/1:56,30:29:86:0.349:2
chr8	17743020	rs484373	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:31:19:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,2:30:2:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,7:29:7:1.00:2	./.	0/1:8,4:31:12:0.333:2	0/1:10,7:32:17:0.412:2	0/1:0,7:30:7:1.00:2	0/1:12,4:31:16:0.250:2
chr8	17794862	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,3:33:41:0.073:2	./.	./.	./.	./.	./.	./.	./.
chr8	17796382	rs412750	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,74:33:74:1.00:2	0/1:0,48:32:48:1.00:2	./.	0/1:0,119:32:119:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,49:31:49:1.00:2	./.	0/1:43,33:32:76:0.434:2	0/1:39,36:31:75:0.480:2	0/1:0,68:32:68:1.00:2	0/1:51,54:32:105:0.514:2
chr8	17796383	rs454755	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,74:31:74:1.00:2	0/1:0,48:31:48:1.00:2	./.	0/1:0,119:31:119:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,49:29:49:1.00:2	./.	0/1:41,33:30:74:0.446:2	0/1:40,35:31:75:0.467:2	0/1:0,68:30:68:1.00:2	0/1:51,54:30:105:0.514:2
chr8	17804829	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:111,4:32:116:0.035:2	./.	./.	./.	./.	./.	./.
chr8	17812999	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,29:32:60:0.483:2	./.	./.	./.	./.	./.	./.	./.
chr8	17814826	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,6:29:19:0.316:2	./.
chr8	17814915	rs208753	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:31:37:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,2:29:2:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,35:29:35:1.00:2	./.	0/1:25,20:28:45:0.444:2	0/1:21,20:32:41:0.488:2	0/1:0,25:30:25:1.00:2	0/1:22,14:29:36:0.389:2
chr8	17817553	rs17635381	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,34:32:77:0.442:2	./.
chr8	17817657	rs34771733	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,16:27:40:0.400:2	0/1:7,15:28:22:0.682:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	17819572	rs3780103	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,7:31:7:1.00:2	0/1:17,23:32:40:0.575:2	0/1:0,25:31:25:1.00:2	0/1:0,34:32:34:1.00:2	./.	0/1:23,15:32:38:0.395:2	0/1:27,17:32:44:0.386:2	0/1:21,13:30:34:0.382:2	0/1:20,16:33:36:0.444:2
chr8	17820714	rs6991775	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,45:32:115:0.391:2	./.
chr8	17830005	rs17514547	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,33:31:68:0.485:2	./.	./.	./.	./.	./.
chr8	17849147	rs370429	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,82:32:178:0.461:2	./.	./.	./.	./.	./.	./.	./.
chr8	17851125	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:32:99:0.040:2
chr8	17915126	rs17636067	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,22:32:45:0.489:2	./.
chr8	17918934	rs10103355	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:33:95:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,19:33:19:1.00:2	0/1:0,174:33:174:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,162:32:162:1.00:2	0/1:2,76:32:78:0.974:2	0/1:1,159:32:160:0.994:2	0/1:1,125:33:126:0.992:2	0/1:0,104:32:104:1.00:2	0/1:0,154:32:154:1.00:2
chr8	17924739	rs2472205	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,25:32:74:0.338:2	./.	./.	./.
chr8	17927294	rs4921834	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,4:31:14:0.286:2	0/1:0,7:32:7:1.00:2	0/1:1,11:32:12:0.917:2	0/1:17,9:33:26:0.346:2	./.	0/1:30,8:32:38:0.211:2
chr8	17927327	rs1049874	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,6:32:14:0.429:2	0/1:0,10:33:10:1.00:2	0/1:0,15:32:15:1.00:2	0/1:15,8:33:23:0.348:2	./.	0/1:24,13:33:37:0.351:2
chr8	17928811	rs1071645	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,29:30:54:0.537:2	0/1:0,64:31:64:1.00:2	0/1:0,55:31:55:1.00:2	0/1:26,25:32:51:0.490:2	./.	0/1:31,24:32:55:0.436:2
chr8	17930727	rs6586687	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,12:31:45:0.267:2	./.	./.	0/1:131,49:30:180:0.272:2	0/1:7,65:31:72:0.903:2	0/1:6,161:30:167:0.964:2	0/1:134,58:32:192:0.302:2	./.	0/1:131,50:32:181:0.276:2
chr8	17930734	rs7461977	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,13:32:47:0.277:2	./.	./.	0/1:124,47:32:171:0.275:2	0/1:7,62:32:69:0.899:2	0/1:6,150:32:156:0.962:2	0/1:133,56:33:190:0.296:2	./.	0/1:135,47:33:182:0.258:2
chr8	17930772	rs3753115	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,9:28:37:0.243:2	./.	./.	0/1:65,43:29:108:0.398:2	0/1:3,38:29:41:0.927:2	0/1:2,88:30:90:0.978:2	0/1:80,21:30:101:0.208:2	./.	0/1:77,32:31:111:0.294:2
chr8	17933099	rs35513736	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,30:31:80:0.375:2	./.	./.	./.
chr8	18077007	rs10106882	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:29:22:1.00:2	0/1:0,22:28:22:1.00:2	0/1:0,3:29:3:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,35:29:35:1.00:2	0/1:0,29:29:29:1.00:2
chr8	18079575	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:31:144:0.028:2	./.	./.	./.	./.	./.
chr8	18079598	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:32:145:0.028:2	./.	./.	./.	./.	./.
chr8	18080001	rs4987076	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,45:30:89:0.506:2	./.	./.	./.
chr8	18080015	rs4986990	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,38:33:74:0.514:2	./.	./.	./.
chr8	18080115	rs5030839	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,19:31:48:0.396:2	0/1:17,15:31:32:0.469:2	./.	./.	./.	./.	./.	./.
chr8	18080196	rs4986783	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,27:32:55:0.491:2	./.	./.	./.
chr8	18080644	rs1057126	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	0/1:0,2:32:2:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,3:32:3:1.00:2	./.	0/1:0,9:31:9:1.00:2	0/1:0,6:27:6:1.00:2	0/1:0,9:31:9:1.00:2
chr8	18080651	rs15561	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	0/1:0,2:31:2:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,3:35:3:1.00:2	./.	0/1:0,10:30:10:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,14:32:14:1.00:2
chr8	18080747	rs4986993	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,4:31:9:0.444:2	./.	./.	0/1:0,13:33:13:1.00:2	0/1:1,9:33:10:0.900:2	0/1:0,12:33:12:1.00:2	0/1:0,11:32:11:1.00:2	0/1:4,6:34:10:0.600:2	0/1:0,17:33:17:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,21:33:21:1.00:2
chr8	18080833	rs28359534	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,15:33:34:0.441:2	./.	./.	./.
chr8	18080901	rs8190862	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,40:33:108:0.370:2	./.	./.	./.
chr8	18080923	rs6982949	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,97:30:98:1.00:2	0/1:0,86:31:86:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,139:30:139:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,120:30:120:1.00:2	0/1:0,92:30:92:1.00:2	0/1:0,109:30:110:1.00:2	0/1:0,128:31:128:1.00:2	0/1:0,106:30:106:1.00:2	0/1:0,144:30:144:1.00:2
chr8	18080933	rs8190863	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,47:32:117:0.402:2	./.	./.	./.
chr8	18257564	rs201339185	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,48:34:97:0.495:2	./.	./.
chr8	18257795	rs1041983	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,60:29:60:1.00:2	./.	0/1:44,22:30:66:0.333:2	./.	0/1:39,30:31:69:0.435:2	./.
chr8	18257854	rs1801280	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,50:31:51:0.980:2	0/1:0,37:32:37:1.00:2	0/1:0,6:31:6:1.00:2	0/1:34,27:33:61:0.443:2	0/1:2,53:31:55:0.964:2	./.	0/1:1,59:33:60:0.983:2	0/1:27,29:32:56:0.518:2	0/1:31,39:33:70:0.557:2	0/1:25,33:30:58:0.569:2	0/1:38,48:32:86:0.558:2
chr8	18257994	rs1799929	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,11:32:24:0.458:2	0/1:10,5:31:15:0.333:2	0/1:0,3:31:3:1.00:2	0/1:11,9:29:20:0.450:2	0/1:2,18:31:20:0.900:2	./.	0/1:0,20:32:20:1.00:2	0/1:12,11:31:23:0.478:2	0/1:9,13:32:22:0.591:2	0/1:12,15:32:27:0.556:2	0/1:8,17:31:25:0.680:2
chr8	18258103	rs1799930	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,28:31:28:1.00:2	./.	0/1:15,4:32:19:0.211:2	./.	0/1:8,4:32:12:0.333:2	./.
chr8	18258316	rs1208	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:32:12:0.500:2	./.	0/1:0,12:31:12:1.00:2	./.	0/1:2,3:30:5:0.600:2	0/1:8,4:32:12:0.333:2	0/1:5,5:32:10:0.500:2	0/1:12,9:31:21:0.429:2
chr8	18258534	rs2552	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,19:32:33:0.576:2	./.	./.	./.	./.
chr8	18393405	rs202145167	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,58:32:124:0.468:2
chr8	18457957	rs2932001	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:32:22:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,5:29:5:1.00:2	0/1:1,17:32:18:0.944:2	0/1:0,14:33:14:1.00:2	0/1:11,9:32:20:0.450:2	0/1:0,18:33:18:1.00:2
chr8	18513220	rs10087662	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:23,19:31:42:0.452:2	0/1:18,12:32:30:0.400:2	./.	./.	0/1:40,24:31:64:0.375:2	./.	./.	./.	./.	./.	0/1:29,32:31:61:0.525:2
chr8	18656805	rs2306825	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,61:32:61:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr8	18725487	rs189888746	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,36:29:79:0.456:2	./.	./.	./.	./.	./.	./.
chr8	18729459	rs13273954	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,70:33:146:0.479:2	./.	./.	./.
chr8	18729496	rs13263453	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,52:31:116:0.448:2	./.	./.	./.
chr8	18729817	rs35723659	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,26:33:53:0.491:2	0/1:13,13:32:26:0.500:2	0/1:0,8:32:8:1.00:2	0/1:19,25:32:44:0.568:2	0/1:19,14:30:33:0.424:2	0/1:4,44:31:48:0.917:2	./.	0/1:23,14:33:37:0.378:2	0/1:24,26:31:50:0.520:2	0/1:1,32:32:33:0.970:2	./.
chr8	18729818	rs7003060	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,27:32:51:0.529:2	0/1:12,13:33:25:0.520:2	0/1:0,8:32:8:1.00:2	0/1:19,25:32:44:0.568:2	0/1:19,14:30:33:0.424:2	0/1:4,44:32:48:0.917:2	./.	0/1:23,14:32:37:0.378:2	0/1:25,26:33:51:0.510:2	0/1:1,32:32:33:0.970:2	./.
chr8	19177103	rs2280444	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,54:32:97:0.557:2	./.	./.	./.	./.	./.	./.
chr8	19190491	rs1574288	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,16:34:32:0.500:2	0/1:20,16:32:36:0.444:2	./.	0/1:38,22:33:60:0.367:2	./.	./.	./.
chr8	19192332	rs56005620	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,4:32:12:0.333:2	./.	0/1:22,13:31:35:0.371:2	0/1:20,29:31:49:0.592:2	./.	0/1:28,18:32:46:0.391:2	./.	./.	./.
chr8	19218745	rs35647122	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,3:32:22:0.136:2	./.	./.	./.
chr8	19218766	rs4921637	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:33:8:0.625:2	./.	0/1:13,14:31:27:0.519:2	./.	./.	0/1:33,9:32:42:0.214:2	./.	./.	./.
chr8	19221700	rs34608771	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:12,13:29:26:0.520:2	0/1:4,11:29:15:0.733:2	./.	./.	0/1:11,17:29:28:0.607:2	./.	0/1:19,19:29:38:0.500:2	./.	./.	./.	./.
chr8	19263441	rs35971700	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,73:31:168:0.435:2	./.	./.	./.
chr8	19316086	rs12155539	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:125,57:32:182:0.313:2	0/1:67,49:31:116:0.422:2	./.	0/1:101,89:31:190:0.468:2	0/1:106,65:31:171:0.380:2	./.	0/1:109,76:31:185:0.411:2	./.	./.	0/1:111,80:32:191:0.419:2	./.
chr8	19362768	rs7017776	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,81:31:82:0.988:2	0/1:0,51:31:51:1.00:2	0/1:14,12:30:26:0.462:2	0/1:0,135:31:135:1.00:2	0/1:0,92:30:92:1.00:2	0/1:81,62:30:143:0.434:2	0/1:2,139:31:141:0.986:2	0/1:83,64:31:147:0.435:2	0/1:0,107:32:107:1.00:2	0/1:0,93:31:93:1.00:2	./.
chr8	19363272	rs201280482	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,3:32:35:0.086:2	./.	./.
chr8	19677915	rs7822495	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,44:32:93:0.473:2	./.	./.	0/1:27,32:32:59:0.542:2	./.	./.	./.	./.
chr8	19805690	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:31:48:0.083:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	19811726	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:29:94:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	19818436	rs316	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,21:32:62:0.339:2
chr8	19819724	rs328	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,21:32:50:0.420:2	./.	./.	0/1:36,22:33:58:0.379:2	./.
chr8	19822810	rs11570891	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,6:29:15:0.400:2	./.	./.	0/1:20,13:31:34:0.394:2	./.
chr8	19822830	rs4922115	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,11:33:33:0.333:2	0/1:14,4:31:18:0.222:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,13:32:40:0.325:2
chr8	20005554	rs17092104	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,6:32:20:0.300:2	0/1:69,53:32:122:0.434:2	./.	0/1:71,65:32:136:0.478:2	0/1:53,58:31:111:0.523:2	./.	./.	./.	./.
chr8	20022410	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,13:30:134:0.097:2	./.	./.	./.	./.
chr8	20036018	rs201530602	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,8:31:14:0.571:2	0/1:54,38:30:92:0.413:2	./.	0/1:48,33:31:81:0.407:2	0/1:40,18:31:58:0.310:2	./.	0/1:32,46:32:78:0.590:2	0/1:38,23:32:61:0.377:2	./.
chr8	20036019	rs28633772	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,8:32:13:0.615:2	0/1:53,38:31:91:0.418:2	./.	0/1:43,33:31:76:0.434:2	0/1:37,18:31:55:0.327:2	./.	0/1:34,45:32:79:0.570:2	0/1:35,23:32:58:0.397:2	./.
chr8	20036713	rs1390938	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,28:31:60:0.467:2	0/1:32,13:32:45:0.289:2	0/1:1,3:33:4:0.750:2	0/1:28,36:32:64:0.563:2	0/1:1,33:31:34:0.971:2	0/1:31,38:32:69:0.551:2	0/1:0,45:32:45:1.00:2	0/1:1,54:32:55:0.982:2	0/1:0,64:32:64:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,88:31:88:1.00:2
chr8	20036827	rs2270637	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,9:32:20:0.450:2	./.	./.	./.	0/1:103,87:33:190:0.458:2	./.	./.	0/1:88,58:32:146:0.397:2	./.
chr8	20038466	rs2270641	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:24:9:0.444:2	0/1:7,5:31:12:0.417:2	./.	./.	0/1:0,17:30:17:1.00:2	./.	./.	0/1:0,10:26:10:1.00:2	0/1:8,4:30:12:0.333:2	./.	0/1:0,12:29:12:1.00:2
chr8	20054928	rs116941637	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,7:31:10:0.700:2	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	20068163	rs7460146	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:32:67:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,55:33:55:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,65:33:65:1.00:2	0/1:0,29:32:29:1.00:2	0/1:1,77:33:78:0.987:2
chr8	20107601	rs723874	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:32:5:0.600:2	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	20110641	rs2645386	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:18,13:32:31:0.419:2	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	0/1:34,21:31:55:0.382:2	0/1:17,33:31:50:0.660:2	./.	./.
chr8	20110665	rs35053302	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,25:31:58:0.431:2	./.	./.	0/1:23,35:31:58:0.603:2	./.	./.	./.
chr8	20110787	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,7:31:32:0.219:2	./.	./.	./.	./.	./.	./.	./.
chr8	21550800	rs1128397	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:33:40:1.00:2	0/1:0,36:33:36:1.00:2	0/1:2,4:32:6:0.667:2	0/1:27,19:32:46:0.413:2	0/1:22,17:32:39:0.436:2	./.	0/1:31,28:32:59:0.475:2	./.	0/1:29,27:33:56:0.482:2	./.	./.
chr8	21550838	rs74640671	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,40:31:68:0.588:2	./.
chr8	21766900	rs17853066	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,74:33:74:1.00:2	0/1:0,57:32:57:1.00:2	./.	./.	0/1:39,49:32:88:0.557:2	./.	./.	./.	./.	./.	./.
chr8	21767275	rs2242240	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,38:31:38:1.00:2	0/1:0,33:32:33:1.00:2	0/1:3,3:34:6:0.500:2	./.	0/1:36,27:32:63:0.429:2	./.	./.	./.	./.	./.	./.
chr8	21777316	rs4357287	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,6:31:8:0.750:2	0/1:3,6:29:9:0.667:2
chr8	21833965	rs2306641	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:32:62:1.00:2	0/1:0,40:32:40:1.00:2	0/1:3,5:31:8:0.625:2	0/1:53,50:32:103:0.485:2	0/1:66,64:31:130:0.492:2	0/1:0,123:31:123:1.00:2	0/1:98,63:32:161:0.391:2	0/1:4,144:32:148:0.973:2	0/1:2,127:33:129:0.984:2	0/1:50,35:33:85:0.412:2	./.
chr8	21837672	rs35396759	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,35:32:73:0.479:2	./.	./.	./.	./.	./.	./.	./.
chr8	21846586	rs2306646	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:33:56:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,18:33:18:1.00:2	0/1:41,45:33:86:0.523:2	0/1:56,40:32:96:0.417:2	0/1:1,65:33:66:0.985:2	0/1:0,67:33:67:1.00:2	0/1:2,89:33:91:0.978:2	0/1:0,61:34:61:1.00:2	0/1:27,17:33:44:0.386:2	0/1:48,34:34:82:0.415:2
chr8	21847855	rs56062629	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,14:32:25:0.560:2	./.	./.	./.	0/1:105,87:33:192:0.453:2	./.	./.	./.	0/1:98,60:32:158:0.380:2
chr8	21862551	rs1058486	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,71:29:74:0.959:2	0/1:0,41:29:41:1.00:2	0/1:0,12:30:12:1.00:2	0/1:72,65:30:137:0.474:2	0/1:84,67:30:151:0.444:2	0/1:0,74:29:74:1.00:2	0/1:0,117:29:117:1.00:2	0/1:0,133:29:133:1.00:2	0/1:0,103:30:103:1.00:2	0/1:52,50:30:102:0.490:2	0/1:45,37:29:82:0.451:2
chr8	21892014	rs192854274	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:32:10:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	21904126	rs3176295	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:29:9:0.444:2	./.	./.	0/1:38,37:31:75:0.493:2	0/1:38,43:32:81:0.531:2	./.	./.	./.	./.
chr8	21905706	rs147413881	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,27:27:42:0.643:2	./.	./.	./.	./.	./.	./.	./.
chr8	21927460	rs7386762	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:30:44:1.00:2	0/1:0,13:29:13:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,28:31:28:1.00:2	0/1:18,29:31:47:0.617:2
chr8	21938092	rs73670336	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,34:30:88:0.386:2
chr8	21953856	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,17:9:93:0.183:2
chr8	21955116	rs11352	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:61,43:31:104:0.413:2	0/1:20,25:32:45:0.556:2	./.	0/1:77,73:31:150:0.487:2	0/1:63,70:30:133:0.526:2	./.	./.	./.	0/1:0,117:31:117:1.00:2	0/1:55,75:31:130:0.577:2	0/1:0,119:31:119:1.00:2
chr8	21956108	rs35497596	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,9:29:34:0.265:2	0/1:11,12:29:23:0.522:2	./.	0/1:25,21:30:46:0.457:2	0/1:31,29:29:60:0.483:2	./.	./.	./.	0/1:1,51:31:52:0.981:2	0/1:24,16:30:40:0.400:2	0/1:0,31:30:31:1.00:2
chr8	21957366	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,4:31:34:0.118:2	./.
chr8	21960096	rs117802113	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,25:32:41:0.610:2	./.
chr8	21965113	rs3739435	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,5:31:10:0.556:2	0/1:36,28:32:64:0.438:2	0/1:46,26:30:72:0.361:2	0/1:24,33:31:57:0.579:2	0/1:0,68:31:69:1.00:2	0/1:2,74:32:76:0.974:2	./.	./.	./.
chr8	21974427	rs112173147	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2
chr8	21978591	rs140534514	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,32:32:76:0.421:2	./.
chr8	21981218	rs117197822	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,16:34:18:0.889:2	./.	0/1:4,3:33:7:0.429:2
chr8	21982991	rs74596676	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,3:30:18:0.167:2	./.
chr8	21984596	rs78489044	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,57:31:119:0.479:2	./.	./.	./.	./.	./.	./.
chr8	21984650	rs12675745	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,22:32:51:0.431:2	0/1:13,10:32:23:0.435:2	./.	0/1:36,23:32:59:0.390:2	0/1:34,25:31:59:0.424:2	./.	./.	./.	0/1:0,69:32:69:1.00:2	0/1:28,24:32:53:0.462:2	0/1:1,48:31:49:0.980:2
chr8	21984765	rs73549523	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,30:28:83:0.366:2	./.
chr8	21984945	rs12675375	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,23:31:58:0.397:2	0/1:14,9:32:23:0.391:2	./.	0/1:25,22:30:47:0.468:2	0/1:28,33:30:61:0.541:2	./.	./.	./.	0/1:0,41:32:41:1.00:2	./.	0/1:0,51:31:51:1.00:2
chr8	21997034	rs147102913	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,16:31:35:0.457:2
chr8	21997501	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,11:12:49:0.229:2	./.	./.	0/1:55,15:10:70:0.214:2	./.	./.	./.	0/1:36,8:14:45:0.182:2
chr8	21997738	rs35574275	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,35:31:75:0.467:2	./.
chr8	22021037	rs4715	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,33:32:72:0.458:2	0/1:15,27:32:42:0.643:2	0/1:4,6:33:10:0.600:2	0/1:75,44:31:119:0.370:2	./.	./.	./.	0/1:1,103:31:104:0.990:2	./.	./.	0/1:63,54:32:117:0.462:2
chr8	22021517	rs1124	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,97:30:100:0.970:2	0/1:1,34:31:35:0.971:2	0/1:5,6:31:11:0.545:2	0/1:1,142:30:143:0.993:2	./.	./.	0/1:51,48:30:99:0.485:2	0/1:4,129:30:133:0.970:2	./.	./.	0/1:16,26:28:42:0.619:2
chr8	22049596	rs145284541	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:31:12:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	22059363	rs11996036	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:20,35:31:56:0.636:2	0/1:15,13:31:28:0.464:2	./.	./.	./.	./.	0/1:75,70:30:145:0.483:2	./.	./.	./.	./.
chr8	22067022	rs77242743	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,65:32:140:0.464:2	0/1:4,120:31:124:0.968:2	./.	./.	./.	./.	./.	./.
chr8	22069208	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:33:90:0.044:2	./.	./.
chr8	22079355	rs4872422	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:31:23:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,18:30:18:1.00:2	0/1:1,38:29:39:0.974:2	0/1:0,30:30:30:1.00:2	0/1:0,25:29:25:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,26:31:26:1.00:2
chr8	22084503	rs11547656	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,19:32:19:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,6:32:6:1.00:2	./.	./.	./.	0/1:28,28:32:56:0.500:2	./.	0/1:10,16:31:26:0.615:2	./.	0/1:16,7:31:23:0.304:2
chr8	22102519	rs200301891	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,18:33:36:0.500:2	./.
chr8	22104763	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:34:108:0.037:2
chr8	22105502	rs1126677	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:30,23:30:53:0.434:2	0/1:13,8:31:21:0.381:2	./.	0/1:27,24:29:51:0.471:2	./.	0/1:0,40:30:40:1.00:2	0/1:28,27:30:55:0.491:2	0/1:0,67:29:67:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,39:29:39:1.00:2	0/1:39,23:30:62:0.371:2
chr8	22106709	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,64:32:146:0.438:2	./.	./.
chr8	22168668	rs140302382	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,26:32:55:0.473:2	./.	./.	./.	./.	./.	./.
chr8	22262321	rs896378	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,29:30:62:0.468:2	0/1:15,27:30:42:0.643:2	0/1:10,4:30:14:0.286:2	0/1:55,48:31:103:0.466:2	./.	0/1:1,103:30:104:0.990:2	0/1:72,61:30:133:0.459:2	./.	./.	0/1:0,64:30:64:1.00:2	0/1:41,43:29:84:0.512:2
chr8	22262379	rs33999442	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,34:31:96:0.354:2	./.	./.	0/1:106,84:31:190:0.442:2	./.	./.	0/1:24,49:31:74:0.671:2	./.
chr8	22262418	rs2293144	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,32:32:69:0.471:2	0/1:23,15:32:38:0.395:2	0/1:9,6:33:15:0.400:2	0/1:69,31:32:100:0.310:2	./.	0/1:1,127:33:128:0.992:2	0/1:93,74:33:167:0.443:2	./.	./.	0/1:1,85:33:86:0.988:2	0/1:42,49:32:91:0.538:2
chr8	22273645	rs150010136	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,68:31:142:0.479:2	./.
chr8	22368700	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:130,4:31:134:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr8	22418823	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,16:29:47:0.340:2	./.	./.	./.	./.	./.	./.	./.
chr8	22421818	rs62492622	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,11:33:24:0.458:2	./.
chr8	22424244	rs2272716	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,35:29:69:0.507:2	./.	./.	./.	0/1:48,29:29:77:0.377:2	./.	./.	./.
chr8	22428708	rs1047030	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,7:23:7:1.00:2	./.	./.	./.
chr8	22442661	rs2294047	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,12:29:50:0.240:2	0/1:25,15:29:40:0.375:2	0/1:5,3:32:8:0.375:2	0/1:42,40:30:82:0.488:2	./.	0/1:43,34:30:77:0.442:2	0/1:35,28:30:63:0.444:2	0/1:49,43:30:92:0.467:2	0/1:1,40:31:41:0.976:2	0/1:0,48:29:48:1.00:2	0/1:35,30:30:65:0.462:2
chr8	22447143	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,8:33:86:0.093:2	./.	./.
chr8	22447151	rs146059951	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,38:32:90:0.422:2	./.	./.	./.
chr8	22449181	rs73229817	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,13:32:32:0.406:2
chr8	22452093	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:35:65:0.062:2	./.
chr8	22458812	rs200444820	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,84:32:182:0.462:2	0/1:65,57:32:122:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	22459488	rs147403979	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,15:29:38:0.395:2	./.	./.	./.
chr8	22463623	rs7843828	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,54:31:95:0.568:2	0/1:43,45:31:88:0.511:2	0/1:53,62:31:115:0.539:2	0/1:41,46:30:87:0.529:2	0/1:40,38:31:78:0.487:2	./.
chr8	22464502	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:33:105:0.038:2	./.	./.	./.	./.	./.
chr8	22471697	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,4:33:49:0.082:2	./.	./.	./.	./.	./.	./.
chr8	22471824	rs3736147	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,43:31:104:0.413:2	0/1:67,41:32:108:0.380:2	0/1:82,48:31:130:0.369:2	0/1:55,49:33:104:0.471:2	0/1:52,37:32:89:0.416:2	./.
chr8	22473224	rs6558165	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:11,13:30:24:0.542:2	0/1:9,8:30:17:0.471:2	./.	./.	./.	./.	./.	0/1:27,12:28:39:0.308:2	./.	./.	./.
chr8	22473281	rs6558166	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:23,12:28:35:0.343:2	0/1:15,6:28:21:0.286:2	./.	./.	./.	./.	./.	0/1:31,18:29:49:0.367:2	./.	./.	./.
chr8	22475863	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,93:32:193:0.482:2	0/1:69,81:32:150:0.540:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	22475954	rs200087292	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,5:33:186:0.027:2
chr8	22476754	rs75182495	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,19:30:29:0.655:2	./.	./.	./.	0/1:9,6:31:15:0.400:2	./.
chr8	22481449	rs1871900	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,17:26:29:0.586:2	0/1:13,5:27:18:0.278:2	./.	./.	./.	0/1:18,19:29:37:0.514:2	0/1:34,24:29:58:0.414:2	0/1:2,50:28:52:0.962:2	0/1:22,15:29:37:0.405:2	0/1:0,36:29:36:1.00:2	./.
chr8	22526559	rs11550509	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:28:6:0.500:2	0/1:30,42:29:72:0.583:2	0/1:42,49:30:91:0.538:2	./.	./.	./.	0/1:36,19:31:55:0.345:2	0/1:21,33:30:54:0.611:2	0/1:20,25:29:45:0.556:2
chr8	22526609	rs73212806	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,44:30:121:0.367:2	./.	./.	./.	./.
chr8	22548790	rs3750192	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,26:29:43:0.605:2	0/1:26,29:28:55:0.527:2	./.	./.	0/1:29,18:31:47:0.383:2	./.	0/1:18,12:32:30:0.400:2
chr8	22570901	rs3087803	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,49:33:109:0.450:2	./.	./.	./.	./.	0/1:78,55:33:133:0.414:2	./.	0/1:73,49:33:122:0.402:2
chr8	22570935	rs1047406	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:50,61:33:111:0.550:2	0/1:27,34:32:61:0.557:2	./.	0/1:79,60:33:139:0.432:2	./.	0/1:80,75:32:155:0.484:2	0/1:80,85:32:165:0.515:2	./.	0/1:3,146:33:150:0.980:2	./.	0/1:92,69:31:161:0.429:2
chr8	22571018	rs1047398	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:27,35:32:62:0.565:2	0/1:21,28:32:49:0.571:2	./.	0/1:40,43:33:83:0.518:2	./.	0/1:52,42:32:94:0.447:2	0/1:43,32:32:75:0.427:2	./.	0/1:2,94:33:96:0.979:2	./.	0/1:69,53:32:122:0.434:2
chr8	22584718	rs1129474	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,18:33:49:0.367:2	0/1:19,22:32:41:0.537:2	./.	./.	./.	0/1:0,57:32:57:1.00:2	0/1:2,68:32:70:0.971:2	0/1:54,47:32:101:0.465:2	0/1:50,35:33:85:0.412:2	./.	0/1:50,33:33:83:0.398:2
chr8	22785159	rs2175192	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:41,28:31:69:0.406:2	0/1:22,11:31:33:0.333:2	0/1:1,6:31:7:0.857:2	./.	./.	./.	./.	./.	0/1:76,47:32:123:0.382:2	./.	0/1:46,35:32:81:0.432:2
chr8	22852096	rs78886842	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,25:33:41:0.610:2	./.	./.
chr8	22864622	rs2466178	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,42:33:42:1.00:2	0/1:0,22:33:22:1.00:2	./.	0/1:0,52:32:52:1.00:2	./.	0/1:21,24:32:45:0.533:2	0/1:0,54:33:54:1.00:2	0/1:38,29:31:67:0.433:2	0/1:0,33:34:33:1.00:2	0/1:0,36:33:36:1.00:2	0/1:0,21:31:21:1.00:2
chr8	22874851	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:32:82:0.049:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	22886020	rs13265018	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,83:32:84:0.988:2	0/1:0,63:32:63:1.00:2	0/1:0,14:33:14:1.00:2	0/1:5,133:33:138:0.964:2	./.	0/1:86,78:33:164:0.476:2	0/1:1,146:32:147:0.993:2	0/1:95,74:32:169:0.438:2	0/1:0,140:33:140:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,112:32:112:1.00:2
chr8	22900701	rs1047266	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,95:31:100:0.950:2	./.	./.	./.
chr8	22926313	rs1129424	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:30:6:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,8:29:8:1.00:2	./.	0/1:0,3:31:3:1.00:2	0/1:1,2:34:3:0.667:2	0/1:0,10:30:10:1.00:2	./.
chr8	22974315	rs61736405	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:33:42:0.095:2	./.	./.	./.
chr8	22974325	rs11780493	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,39:31:45:0.867:2	0/1:4,16:31:20:0.800:2	0/1:3,3:28:6:0.500:2	0/1:11,35:30:46:0.761:2	0/1:22,22:32:44:0.500:2	0/1:23,18:31:42:0.439:2	0/1:19,36:31:55:0.655:2	0/1:7,35:30:42:0.833:2	0/1:10,41:32:51:0.804:2	0/1:22,21:32:43:0.488:2	0/1:7,41:32:48:0.854:2
chr8	22974360	rs12550828	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,5:26:53:0.094:2	./.	./.	./.	./.
chr8	22974370	rs151239314	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,6:29:51:0.118:2	0/1:46,6:29:52:0.115:2	./.	./.	0/1:56,4:32:60:0.067:2
chr8	22974415	rs11780526	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,15:32:45:0.333:2	0/1:18,24:31:42:0.571:2	./.	./.	0/1:29,24:31:53:0.453:2
chr8	22974450	rs9644063	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,14:32:14:1.00:2	0/1:0,6:27:6:1.00:2	0/1:0,2:30:2:1.00:2	0/1:0,24:32:24:1.00:2	0/1:11,17:30:28:0.607:2	0/1:13,14:31:28:0.519:2	0/1:0,26:32:26:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,22:31:22:1.00:2	0/1:25,10:30:35:0.286:2	0/1:0,34:30:34:1.00:2
chr8	23001988	rs1133782	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,40:27:71:0.563:2	0/1:21,18:29:39:0.462:2	0/1:0,14:28:14:1.00:2	0/1:37,61:27:98:0.622:2	0/1:0,107:27:107:1.00:2	0/1:39,37:27:76:0.487:2	0/1:0,99:27:99:1.00:2	0/1:1,81:27:82:0.988:2	0/1:0,77:28:77:1.00:2	0/1:34,26:28:60:0.433:2	0/1:44,37:27:82:0.457:2
chr8	23002090	rs55636833	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,64:31:134:0.478:2	./.	./.	./.	0/1:38,58:32:96:0.604:2	./.
chr8	23021346	rs11135703	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,30:31:72:0.417:2	./.	./.	./.	./.
chr8	23049292	rs2230229	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,62:32:62:1.00:2	0/1:0,61:32:61:1.00:2	./.	0/1:1,79:31:80:0.988:2	0/1:0,78:31:78:1.00:2	0/1:0,81:30:82:1.00:2	0/1:0,93:31:93:1.00:2	./.	0/1:0,120:32:120:1.00:2	0/1:0,69:31:69:1.00:2	0/1:60,47:32:107:0.439:2
chr8	23049382	rs181796380	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:106,86:30:192:0.448:2	./.	./.	./.	./.	./.	./.
chr8	23058188	rs4872077	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:52,24:30:76:0.316:2	0/1:40,18:31:58:0.310:2	./.	./.	0/1:49,45:30:94:0.479:2	0/1:64,44:30:109:0.407:2	0/1:72,38:30:110:0.345:2	./.	0/1:0,100:30:100:1.00:2	0/1:49,39:30:88:0.443:2	./.
chr8	23058220	rs20576	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,7:31:18:0.389:2	./.	./.	0/1:47,55:32:102:0.539:2	./.	0/1:77,84:30:161:0.522:2	./.	0/1:50,37:30:87:0.425:2	0/1:72,39:30:111:0.351:2
chr8	23059324	rs20575	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,66:32:68:0.971:2	0/1:1,45:32:46:0.978:2	0/1:5,6:32:11:0.545:2	0/1:62,45:32:107:0.421:2	0/1:39,34:32:73:0.466:2	./.	0/1:47,47:32:94:0.500:2	0/1:50,57:32:107:0.533:2	./.	./.	0/1:39,34:32:73:0.466:2
chr8	23059326	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:32:76:0.053:2	./.	./.	./.	./.	./.
chr8	23060256	rs17620	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,94:29:95:0.989:2	0/1:0,53:28:53:1.00:2	0/1:13,9:31:22:0.409:2	0/1:63,60:29:123:0.488:2	0/1:34,43:28:77:0.558:2	./.	0/1:57,39:29:96:0.406:2	0/1:64,32:28:96:0.333:2	./.	./.	0/1:67,29:26:96:0.302:2
chr8	23148930	rs200790441	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,28:27:63:0.444:2	0/1:19,20:27:39:0.513:2	0/1:0,12:30:12:1.00:2	0/1:1,81:28:82:0.988:2	0/1:52,58:29:110:0.527:2	0/1:57,27:28:84:0.321:2	./.	0/1:1,94:28:95:0.989:2	0/1:58,43:27:101:0.426:2	./.	./.
chr8	23148940	rs2272761	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,28:32:68:0.412:2	0/1:19,20:32:39:0.513:2	0/1:0,14:32:14:1.00:2	0/1:1,98:31:99:0.990:2	0/1:56,63:32:119:0.529:2	0/1:62,36:32:98:0.367:2	./.	0/1:1,106:32:107:0.991:2	0/1:63,52:32:115:0.452:2	./.	./.
chr8	23148978	rs2272760	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,7:31:20:0.350:2	0/1:54,57:31:111:0.514:2	./.	0/1:73,59:31:132:0.447:2	./.	0/1:82,68:32:150:0.453:2	0/1:87,67:32:154:0.435:2	./.	./.
chr8	23150878	rs13530	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,12:31:34:0.353:2	0/1:11,12:30:23:0.522:2	0/1:0,9:29:9:1.00:2	0/1:1,35:31:36:0.972:2	0/1:23,21:28:44:0.477:2	0/1:34,20:30:54:0.370:2	./.	0/1:0,33:31:33:1.00:2	0/1:20,24:31:44:0.545:2	./.	./.
chr8	23152334	rs15946	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,20:27:39:0.513:2	0/1:20,12:29:32:0.375:2	0/1:0,13:29:13:1.00:2	0/1:0,100:29:100:1.00:2	0/1:55,47:29:102:0.461:2	0/1:0,95:29:95:1.00:2	0/1:51,59:28:110:0.536:2	0/1:0,93:28:93:1.00:2	0/1:51,44:29:95:0.463:2	0/1:0,65:30:65:1.00:2	0/1:33,44:29:77:0.571:2
chr8	23167353	rs1063582	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,78:33:80:0.975:2	0/1:1,59:32:60:0.983:2	0/1:10,15:33:25:0.600:2	0/1:0,129:32:129:1.00:2	0/1:0,182:32:182:1.00:2	0/1:100,84:32:184:0.457:2	0/1:2,152:33:154:0.987:2	0/1:105,75:32:180:0.417:2	0/1:69,66:33:135:0.489:2	0/1:0,106:33:106:1.00:2	0/1:1,66:32:67:0.985:2
chr8	23179696	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:104,93:31:197:0.472:2	./.	./.	./.	./.	./.	./.
chr8	23179750	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:32:159:0.025:2	./.	./.
chr8	23186007	rs1051146	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:31:54:1.00:2	0/1:2,31:31:33:0.939:2	0/1:7,4:33:11:0.364:2	0/1:2,85:32:87:0.977:2	0/1:0,84:30:84:1.00:2	0/1:55,45:32:100:0.450:2	0/1:1,87:32:88:0.989:2	0/1:63,35:32:98:0.357:2	0/1:34,51:33:85:0.600:2	0/1:32,33:31:65:0.508:2	0/1:0,71:31:71:1.00:2
chr8	23190941	rs1010156	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,30:29:30:1.00:2	0/1:0,29:30:29:1.00:2	0/1:3,6:32:9:0.667:2	./.	0/1:52,59:30:111:0.532:2	0/1:39,29:30:68:0.426:2	0/1:2,92:30:94:0.979:2	0/1:47,46:30:93:0.495:2	./.	0/1:36,31:31:67:0.463:2	0/1:31,16:30:47:0.340:2
chr8	23191102	rs150715433	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:32:63:0.065:2	./.	./.	./.	./.
chr8	23225559	rs1063577	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,36:31:67:0.537:2	0/1:44,29:32:73:0.397:2	0/1:32,41:31:73:0.562:2	0/1:20,31:33:51:0.608:2	./.	./.
chr8	23225745	rs2294133	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,36:32:68:0.529:2	./.	./.	./.
chr8	23290451	rs17089244	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.	./.	./.
chr8	23291835	rs1142283	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,104:29:189:0.550:2	./.	0/1:103,75:30:178:0.421:2	0/1:77,101:30:178:0.567:2	./.	./.
chr8	23292985	rs3736652	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:22,23:32:45:0.511:2	0/1:9,9:31:18:0.500:2	./.	./.	./.	./.	./.	0/1:17,17:30:34:0.500:2	./.	./.	./.
chr8	23294761	rs2272641	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:50,26:31:76:0.342:2	0/1:29,11:33:40:0.275:2	./.	./.	0/1:20,26:31:46:0.565:2	./.	./.	./.	./.	0/1:49,25:32:74:0.338:2	./.
chr8	23299109	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,2:34:5:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	23423669	rs2942194	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,18:31:34:0.529:2	0/1:5,10:32:15:0.667:2	0/1:4,4:32:8:0.500:2	0/1:10,8:32:18:0.444:2	0/1:0,36:31:36:1.00:2	./.	./.	0/1:22,6:32:28:0.214:2	./.	./.	./.
chr8	23423697	rs3736032	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,15:32:40:0.375:2	0/1:21,27:33:48:0.563:2	./.	./.	./.
chr8	23423758	rs10992	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,29:33:66:0.439:2	0/1:20,23:32:43:0.535:2	0/1:3,6:31:9:0.667:2	0/1:0,104:32:104:1.00:2	0/1:2,109:32:111:0.982:2	0/1:0,88:32:88:1.00:2	./.	0/1:72,60:32:132:0.455:2	0/1:73,46:33:119:0.387:2	0/1:40,35:32:75:0.467:2	0/1:0,106:33:106:1.00:2
chr8	23428966	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:31:103:0.039:2	./.	./.
chr8	23563815	rs2228697	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,13:30:37:0.351:2	0/1:14,17:30:31:0.548:2	./.	0/1:12,6:31:18:0.333:2	0/1:14,5:31:20:0.263:2
chr8	24171051	rs6996616	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:78,84:32:162:0.519:2	0/1:25,55:32:80:0.688:2	./.	0/1:90,67:31:157:0.427:2	./.	./.	./.	./.	0/1:0,152:33:152:1.00:2	./.	./.
chr8	24187575	rs151133749	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,38:32:98:0.388:2	0/1:34,36:32:70:0.514:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	24199270	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:189,4:34:193:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr8	24200638	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:31:177:0.023:2	./.
chr8	24211278	rs7815643	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,117:33:117:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,16:30:16:1.00:2	0/1:1,147:32:148:0.993:2	0/1:0,100:32:100:1.00:2	0/1:0,163:31:163:1.00:2	0/1:0,120:32:120:1.00:2	0/1:0,151:32:151:1.00:2	0/1:0,180:33:180:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,170:33:170:1.00:2
chr8	24211331	rs7814768	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:32:86:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,13:31:13:1.00:2	0/1:1,89:31:90:0.989:2	0/1:0,47:31:47:1.00:2	0/1:0,100:31:100:1.00:2	0/1:1,79:31:80:0.988:2	0/1:0,98:31:98:1.00:2	0/1:0,114:32:114:1.00:2	0/1:0,86:31:86:1.00:2	0/1:0,115:32:115:1.00:2
chr8	24211869	rs7818974	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:27:10:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	24250832	rs61752046	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,45:33:106:0.425:2	./.	./.
chr8	24255229	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,4:29:49:0.082:2	./.	./.	./.	./.	./.	./.
chr8	24256010	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:32:157:0.025:2	./.	./.
chr8	24256052	rs2291576	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,40:32:98:0.408:2
chr8	24256470	rs2291577	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,53:32:107:0.495:2	0/1:37,37:32:74:0.500:2	0/1:10,9:31:19:0.474:2	0/1:1,103:32:104:0.990:2	./.	0/1:75,55:31:130:0.423:2	0/1:1,133:31:134:0.993:2	0/1:94,71:32:165:0.430:2	./.	0/1:59,68:32:127:0.535:2	0/1:1,112:32:113:0.991:2
chr8	24261526	rs3765124	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,61:33:102:0.598:2	0/1:28,24:32:52:0.462:2	0/1:15,15:32:30:0.500:2	0/1:1,118:32:119:0.992:2	./.	0/1:69,64:32:133:0.481:2	0/1:2,128:33:130:0.985:2	0/1:74,65:33:139:0.468:2	./.	0/1:70,46:33:116:0.397:2	0/1:0,128:33:128:1.00:2
chr8	24339679	rs13255694	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,23:31:56:0.411:2	0/1:14,17:31:31:0.548:2	./.	0/1:5,50:30:55:0.909:2	0/1:23,16:30:39:0.410:2	./.	0/1:23,13:31:36:0.361:2	./.	./.	./.	0/1:0,65:31:65:1.00:2
chr8	24346840	rs61752047	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,13:27:44:0.295:2	0/1:19,6:24:25:0.240:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	24350715	rs12547971	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,18:31:39:0.462:2	./.	./.	./.
chr8	24356818	rs13259668	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,18:33:38:0.474:2	0/1:13,12:33:25:0.480:2	./.	0/1:1,51:33:52:0.981:2	0/1:17,11:32:28:0.393:2	./.	0/1:19,25:33:44:0.568:2	./.	./.	./.	0/1:0,58:33:58:1.00:2
chr8	24358325	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:34:188:0.021:2	./.	./.
chr8	24359068	rs13277171	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,10:31:24:0.417:2	0/1:8,10:31:18:0.556:2	./.	0/1:0,27:30:27:1.00:2	0/1:13,10:30:23:0.435:2	./.	0/1:32,18:30:50:0.360:2	./.	./.	./.	0/1:0,68:31:68:1.00:2
chr8	24366020	rs2290150	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,14:33:26:0.538:2	./.	./.	0/1:1,25:33:26:0.962:2	0/1:12,5:32:17:0.294:2	./.	0/1:13,9:32:22:0.409:2	./.	./.	./.	0/1:0,53:32:53:1.00:2
chr8	24771984	rs61735463	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,23:32:38:0.605:2	./.
chr8	24774683	rs196864	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,61:31:62:0.984:2	0/1:0,51:31:52:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,88:31:88:1.00:2	0/1:0,52:30:52:1.00:2	0/1:1,75:30:76:0.987:2	0/1:0,55:31:55:1.00:2	0/1:2,57:30:59:0.966:2	0/1:0,69:31:69:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,69:31:69:1.00:2
chr8	24774812	rs61751047	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,11:32:40:0.275:2	./.
chr8	24775300	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:30:104:0.038:2
chr8	24775303	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:32:106:0.038:2
chr8	24813784	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:34:191:0.021:2	./.	./.	./.	./.	./.
chr8	25159885	rs907157	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:29:24:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,13:30:13:1.00:2	0/1:25,21:30:46:0.457:2	0/1:35,21:30:56:0.375:2	0/1:0,30:30:30:1.00:2	0/1:31,25:31:56:0.446:2	./.	0/1:1,30:30:31:0.968:2	0/1:15,12:30:27:0.444:2	./.
chr8	25182969	rs2666172	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,56:31:106:0.528:2	0/1:30,31:32:61:0.508:2	0/1:9,8:31:17:0.471:2	0/1:1,121:31:122:0.992:2	0/1:0,104:30:104:1.00:2	0/1:60,53:31:113:0.469:2	0/1:0,98:31:98:1.00:2	0/1:4,140:31:144:0.972:2	0/1:0,135:32:135:1.00:2	0/1:1,122:32:123:0.992:2	0/1:0,167:31:167:1.00:2
chr8	25203022	rs2468902	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:29:74:1.00:2	0/1:0,41:29:41:1.00:2	0/1:0,8:30:8:1.00:2	0/1:1,79:29:80:0.988:2	0/1:0,145:29:145:1.00:2	0/1:0,86:29:86:1.00:2	0/1:0,182:29:182:1.00:2	0/1:0,111:29:111:1.00:2	0/1:1,91:31:92:0.989:2	0/1:0,62:28:62:1.00:2	0/1:0,50:29:50:1.00:2
chr8	25222165	rs2271111	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,53:30:112:0.473:2	0/1:43,35:29:78:0.449:2	0/1:0,16:29:16:1.00:2	0/1:46,53:30:100:0.535:2	./.	0/1:67,54:28:121:0.446:2	0/1:0,90:29:90:1.00:2	0/1:74,43:29:117:0.368:2	0/1:85,58:30:143:0.406:2	0/1:51,44:28:95:0.463:2	./.
chr8	25224426	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,4:29:69:0.058:2	./.	./.	./.	./.	./.	./.
chr8	25230168	rs2271108	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,23:32:58:0.397:2	0/1:11,11:31:22:0.500:2	0/1:0,11:30:11:1.00:2	0/1:0,91:31:91:1.00:2	./.	0/1:56,42:31:98:0.429:2	0/1:1,81:31:82:0.988:2	0/1:73,39:31:112:0.348:2	0/1:43,44:32:87:0.506:2	0/1:0,58:31:58:1.00:2	0/1:41,40:32:81:0.494:2
chr8	25234858	rs2659585	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,126:33:127:0.992:2	0/1:0,56:32:56:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,126:33:126:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,151:32:151:1.00:2	0/1:0,121:32:121:1.00:2	0/1:0,176:33:176:1.00:2	0/1:0,171:34:171:1.00:2	0/1:1,123:33:124:0.992:2	0/1:0,164:33:164:1.00:2
chr8	25265651	rs34067851	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,19:30:42:0.452:2	./.
chr8	25267622	rs2709618	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,32:29:32:1.00:2	0/1:1,17:28:18:0.944:2	./.	./.	0/1:43,16:30:59:0.271:2	0/1:29,32:30:61:0.525:2	0/1:48,31:30:79:0.392:2	0/1:26,27:29:53:0.509:2	0/1:22,18:29:40:0.450:2	0/1:0,36:29:36:1.00:2	0/1:37,26:30:63:0.413:2
chr8	25280800	rs6185	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,18:30:50:0.360:2	0/1:9,6:31:15:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	25287397	rs1812594	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,25:33:46:0.543:2	0/1:80,73:33:153:0.477:2	0/1:104,86:33:190:0.453:2	0/1:101,84:33:185:0.454:2	0/1:98,85:33:183:0.464:2	./.	0/1:97,71:34:168:0.423:2	./.	./.
chr8	25287399	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:33:186:0.022:2	./.	./.	./.	./.
chr8	25290946	rs202013970	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:32:71:0.056:2	./.	./.	./.
chr8	25296796	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:34:77:0.052:2	./.	./.	./.	./.
chr8	25296804	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:32:82:0.049:2	./.	./.	./.	./.
chr8	25296842	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,8:31:96:0.083:2	./.	0/1:72,4:32:76:0.053:2	./.	./.	./.	./.
chr8	25296859	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,8:32:90:0.089:2	0/1:114,4:32:118:0.034:2	0/1:57,6:32:63:0.095:2	./.	./.	./.	./.
chr8	25315774	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,3:31:34:0.088:2	0/1:36,4:33:40:0.100:2	./.	./.	0/1:71,4:32:75:0.053:2	./.	./.	./.
chr8	25317824	rs1506863	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,8:31:15:0.533:2	0/1:4,159:31:163:0.975:2	0/1:82,50:31:132:0.379:2	0/1:80,69:31:149:0.463:2	0/1:90,55:31:145:0.379:2	0/1:114,83:32:197:0.421:2	0/1:181,4:33:187:0.022:2	./.	0/1:99,91:32:190:0.479:2
chr8	25323777	rs10108752	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:29:82:1.00:2	0/1:0,55:29:55:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,84:29:84:1.00:2	0/1:0,64:29:64:1.00:2	0/1:0,74:29:74:1.00:2	0/1:0,48:29:48:1.00:2	0/1:0,79:29:79:1.00:2	0/1:0,81:29:81:1.00:2	0/1:0,56:29:56:1.00:2	0/1:0,104:29:105:1.00:2
chr8	25364331	rs4872318	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,10:31:26:0.385:2	0/1:3,4:31:7:0.571:2	./.	./.	0/1:20,4:31:24:0.167:2	0/1:11,12:30:23:0.522:2	0/1:12,6:30:18:0.333:2	0/1:10,8:32:18:0.444:2	0/1:14,7:27:21:0.333:2	0/1:0,17:31:17:1.00:2	0/1:16,6:31:22:0.273:2
chr8	25364834	rs3829009	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:29:4:0.750:2	0/1:14,3:31:17:0.176:2	./.	0/1:11,4:31:15:0.267:2	./.	./.	./.	./.	./.
chr8	25364960	rs6990278	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:29:7:1.00:2	0/1:24,13:30:37:0.351:2	0/1:17,18:28:35:0.514:2	0/1:19,14:29:33:0.424:2	0/1:22,10:29:32:0.313:2	./.	./.	./.	./.
chr8	25708267	rs10866845	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,53:28:91:0.582:2	0/1:26,32:27:58:0.552:2	0/1:6,7:30:13:0.538:2	0/1:0,98:29:98:1.00:2	0/1:0,79:28:79:1.00:2	0/1:53,41:28:94:0.436:2	0/1:1,84:28:85:0.988:2	./.	0/1:48,47:29:95:0.495:2	0/1:48,41:29:89:0.461:2	0/1:58,55:28:113:0.487:2
chr8	26240646	rs1055479	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,19:28:42:0.452:2	0/1:14,12:28:26:0.462:2	0/1:2,5:28:7:0.714:2	0/1:49,51:28:100:0.510:2	./.	./.	0/1:35,27:27:62:0.435:2	0/1:0,107:28:107:1.00:2	./.	0/1:0,58:27:58:1.00:2	0/1:41,20:27:61:0.328:2
chr8	26365290	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,28:34:55:0.509:2	./.	./.
chr8	26365716	rs2233701	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,22:31:52:0.423:2	0/1:9,21:32:30:0.700:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	26366753	rs2233699	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,6:32:16:0.375:2	0/1:11,9:33:20:0.450:2	./.	0/1:14,12:33:26:0.462:2	./.
chr8	26441477	rs11786691	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,16:31:41:0.390:2	0/1:21,27:30:48:0.563:2	./.	0/1:21,32:30:53:0.604:2	./.
chr8	26481771	rs327222	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,144:28:145:0.993:2	0/1:0,83:28:83:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,170:29:170:1.00:2	0/1:0,165:28:165:1.00:2	0/1:0,166:28:166:1.00:2	0/1:0,155:29:155:1.00:2	0/1:0,156:28:156:1.00:2	0/1:1,157:29:158:0.994:2	0/1:0,143:28:143:1.00:2	0/1:0,150:28:151:1.00:2
chr8	26484757	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:32:156:0.026:2	./.	./.	./.	./.	./.
chr8	26492397	rs78121726	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,56:31:114:0.491:2	./.	./.	./.
chr8	26505307	rs139163162	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,23:32:55:0.418:2	0/1:17,11:32:28:0.393:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	26510792	rs708621	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,100:29:100:1.00:2	0/1:1,57:29:58:0.983:2	0/1:15,17:30:32:0.531:2	./.	0/1:0,157:30:157:1.00:2	0/1:103,61:30:164:0.372:2	0/1:1,155:29:156:0.994:2	./.	0/1:99,66:30:165:0.400:2	0/1:0,125:30:125:1.00:2	0/1:84,57:28:141:0.404:2
chr8	26627802	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:33:64:0.063:2	./.
chr8	26628028	rs1048101	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,25:30:25:1.00:2	0/1:0,25:30:25:1.00:2	./.	0/1:2,36:29:38:0.947:2	0/1:20,17:30:37:0.459:2	0/1:21,22:30:43:0.512:2	0/1:27,29:28:56:0.518:2	0/1:34,21:30:55:0.382:2	./.	./.	0/1:0,40:29:41:1.00:2
chr8	26721888	rs2229125	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,22:30:55:0.400:2	./.	./.	./.
chr8	27094399	rs73239446	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,16:31:35:0.457:2	0/1:13,8:29:21:0.381:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	27101204	rs4733040	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:26,17:31:43:0.395:2	0/1:0,181:31:181:1.00:2	0/1:111,81:31:192:0.422:2	0/1:1,180:31:181:0.994:2	0/1:2,186:31:188:0.989:2	0/1:106,86:32:192:0.448:2	0/1:0,179:32:179:1.00:2	0/1:100,72:32:172:0.419:2	0/1:2,178:31:180:0.989:2
chr8	27101206	rs7830662	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:26,17:32:43:0.395:2	0/1:0,181:32:181:1.00:2	0/1:114,82:32:196:0.418:2	0/1:2,180:32:182:0.989:2	0/1:2,186:32:188:0.989:2	0/1:107,87:33:194:0.448:2	0/1:0,178:33:179:1.00:2	0/1:105,72:33:177:0.407:2	0/1:1,180:33:181:0.994:2
chr8	27101279	rs3739214	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,57:30:129:0.442:2	./.	./.	./.	./.	./.	0/1:82,54:31:136:0.397:2	./.
chr8	27147716	rs12386801	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,17:33:17:1.00:2	0/1:0,14:32:14:1.00:2	./.	./.	0/1:0,25:32:25:1.00:2	0/1:0,23:32:23:1.00:2	0/1:7,7:32:14:0.500:2	0/1:0,30:32:30:1.00:2	0/1:20,12:33:32:0.375:2	0/1:10,10:33:20:0.500:2	0/1:17,19:32:36:0.528:2
chr8	27151775	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,21:30:40:0.525:2	./.
chr8	27156008	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,85:32:131:0.649:2	./.	./.	./.
chr8	27255128	rs1045510	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,24:32:71:0.338:2	0/1:0,46:31:46:1.00:2	0/1:44,34:32:78:0.436:2	./.	0/1:50,27:32:77:0.351:2	0/1:46,27:32:73:0.370:2	./.	0/1:41,21:33:62:0.339:2
chr8	27255146	rs1045511	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,33:31:87:0.379:2	0/1:0,61:31:61:1.00:2	0/1:52,43:31:95:0.453:2	./.	0/1:65,30:31:95:0.316:2	0/1:51,47:32:98:0.480:2	./.	0/1:52,29:31:81:0.358:2
chr8	27255263	rs1045512	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,58:33:115:0.504:2	0/1:0,156:32:156:1.00:2	0/1:77,61:33:138:0.442:2	./.	0/1:94,80:33:174:0.460:2	0/1:79,81:34:160:0.506:2	./.	0/1:78,53:33:131:0.405:2
chr8	27277537	rs1030526	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:69,65:32:134:0.485:2	0/1:38,38:33:76:0.500:2	0/1:10,10:32:20:0.500:2	./.	./.	0/1:111,83:32:195:0.428:2	0/1:107,78:33:185:0.422:2	0/1:102,87:32:189:0.460:2	0/1:97,100:33:197:0.508:2	0/1:84,85:33:169:0.503:2	0/1:96,60:32:156:0.385:2
chr8	27293335	rs11774417	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:16,10:30:26:0.385:2	0/1:4,9:31:13:0.692:2	./.	0/1:20,16:31:36:0.444:2	./.	./.	./.	./.	0/1:18,20:30:38:0.526:2	./.	0/1:10,15:30:25:0.600:2
chr8	27293865	rs7005936	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,78:32:175:0.446:2	0/1:64,54:32:118:0.458:2	./.	./.	./.	0/1:105,78:32:183:0.426:2	0/1:117,68:32:185:0.368:2	0/1:1,170:32:171:0.994:2	0/1:98,88:33:186:0.473:2	0/1:85,91:33:176:0.517:2	0/1:88,100:32:188:0.532:2
chr8	27297774	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,3:35:71:0.042:2	./.	./.	./.	./.
chr8	27301725	rs1128435	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,24:30:50:0.480:2	0/1:16,10:29:26:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	27308538	rs751018	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,49:31:140:0.350:2	0/1:51,35:30:87:0.407:2	./.	./.	./.	0/1:78,82:30:160:0.513:2	0/1:86,58:30:144:0.403:2	0/1:4,112:30:116:0.966:2	0/1:84,74:31:158:0.468:2	0/1:94,58:31:153:0.382:2	0/1:87,79:30:167:0.476:2
chr8	27308585	rs751019	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,66:29:103:0.641:2	0/1:17,25:28:42:0.595:2	0/1:0,11:30:11:1.00:2	0/1:83,51:29:134:0.381:2	0/1:2,71:28:73:0.973:2	0/1:56,53:28:109:0.486:2	./.	./.	0/1:40,55:29:95:0.579:2	./.	0/1:57,60:27:117:0.513:2
chr8	27311703	rs1879184	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:30:61:1.00:2	0/1:0,28:30:28:1.00:2	0/1:2,8:27:10:0.800:2	0/1:45,45:31:90:0.500:2	0/1:0,92:29:92:1.00:2	0/1:0,70:29:70:1.00:2	0/1:58,61:30:119:0.513:2	0/1:0,101:29:101:1.00:2	0/1:0,53:31:53:1.00:2	0/1:37,40:30:77:0.519:2	0/1:0,53:29:53:1.00:2
chr8	27312040	rs10093964	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,17:30:44:0.386:2	0/1:15,11:31:26:0.423:2	./.	./.	./.	0/1:21,18:29:39:0.462:2	0/1:35,29:29:64:0.453:2	0/1:0,49:29:49:1.00:2	0/1:31,39:31:70:0.557:2	0/1:32,18:28:50:0.360:2	0/1:30,19:29:49:0.388:2
chr8	27312135	rs7007145	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,26:32:48:0.542:2	0/1:29,16:32:45:0.356:2	./.	./.	./.	0/1:27,22:31:49:0.449:2	0/1:59,44:32:104:0.427:2	0/1:2,93:31:95:0.979:2	0/1:50,37:31:87:0.425:2	0/1:27,32:31:59:0.542:2	0/1:34,34:31:68:0.500:2
chr8	27315876	rs1879182	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:29:57:1.00:2	0/1:0,59:29:59:1.00:2	0/1:10,6:30:16:0.375:2	0/1:69,54:29:123:0.439:2	0/1:0,170:27:170:1.00:2	0/1:0,116:27:116:1.00:2	0/1:125,59:29:184:0.321:2	0/1:0,145:28:145:1.00:2	0/1:0,100:30:100:1.00:2	0/1:70,37:30:107:0.346:2	0/1:0,92:29:92:1.00:2
chr8	27315900	rs1879181	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:32:58:1.00:2	0/1:0,58:32:58:1.00:2	0/1:10,5:31:15:0.333:2	0/1:74,61:33:135:0.452:2	0/1:0,171:31:171:1.00:2	0/1:0,119:31:119:1.00:2	0/1:117,62:31:179:0.346:2	0/1:0,139:31:139:1.00:2	0/1:0,110:33:111:1.00:2	0/1:77,43:32:120:0.358:2	0/1:0,88:32:88:1.00:2
chr8	27320930	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,69:32:163:0.423:2	./.	./.
chr8	27324822	rs891398	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,40:29:75:0.533:2	0/1:31,25:29:56:0.446:2	0/1:6,4:29:10:0.400:2	0/1:1,68:30:69:0.986:2	0/1:55,70:29:125:0.560:2	./.	0/1:2,113:30:115:0.983:2	0/1:0,98:29:98:1.00:2	0/1:51,45:29:96:0.469:2	0/1:2,67:29:69:0.971:2	0/1:39,63:29:103:0.618:2
chr8	27324844	rs2565061	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,5:32:13:0.385:2	0/1:39,25:31:64:0.391:2	./.	./.	0/1:70,38:30:108:0.352:2	./.	./.	0/1:28,27:31:55:0.491:2	./.
chr8	27328511	rs2472553	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,53:30:104:0.510:2	./.	./.	0/1:47,40:29:87:0.460:2	./.
chr8	27358505	rs41507953	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,18:33:44:0.409:2
chr8	27373865	rs751141	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:193,5:28:198:0.025:2	0/1:83,103:33:186:0.554:2	./.	./.	0/1:103,89:33:192:0.464:2	./.	./.
chr8	27373923	rs4149243	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,75:28:190:0.395:2	0/1:103,81:27:184:0.440:2
chr8	27394366	rs13439459	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,19:28:54:0.352:2
chr8	27396208	rs4149253	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,26:33:67:0.388:2	./.
chr8	27401964	rs1126452	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,43:32:95:0.453:2	./.	./.	0/1:54,52:33:106:0.491:2	0/1:49,43:31:92:0.467:2	0/1:55,41:32:96:0.427:2
chr8	27462481	rs7982	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,30:31:61:0.492:2	0/1:20,23:31:43:0.535:2	0/1:0,9:32:9:1.00:2	0/1:44,51:33:95:0.537:2	0/1:54,38:31:92:0.413:2	0/1:73,45:31:118:0.381:2	0/1:0,96:32:96:1.00:2	0/1:73,60:32:133:0.451:2	./.	0/1:0,62:31:63:1.00:2	0/1:0,102:31:102:1.00:2
chr8	27462514	rs367989790	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,32:31:93:0.344:2	./.	./.	./.	./.	./.
chr8	27516360	rs139834620	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,53:32:110:0.482:2	./.	./.	./.
chr8	27528446	rs17057523	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:33:10:0.300:2	./.	./.	./.	0/1:13,9:33:22:0.409:2	./.	./.	./.	./.
chr8	27610043	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,6:32:59:0.102:2	./.	./.	./.	./.	./.	./.
chr8	27634064	rs4732748	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,29:33:63:0.460:2	0/1:33,9:30:42:0.214:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	27667969	rs2294092	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,92:33:93:0.989:2	0/1:0,40:31:40:1.00:2	0/1:5,6:33:11:0.545:2	0/1:52,46:33:98:0.469:2	./.	0/1:0,75:31:75:1.00:2	./.	0/1:5,89:32:94:0.947:2	0/1:62,58:33:120:0.483:2	0/1:1,81:33:82:0.988:2	0/1:60,57:32:117:0.487:2
chr8	27668643	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:34:87:0.046:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	27679981	rs3779620	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,31:32:56:0.554:2	0/1:13,20:32:33:0.606:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	27680602	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:31:139:0.029:2	./.	./.
chr8	27685663	rs55973425	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,8:31:24:0.333:2	./.	./.	./.	./.
chr8	27690557	rs10113621	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,18:32:35:0.514:2	0/1:19,10:33:29:0.345:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	27729532	rs61737291	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,44:31:99:0.444:2	0/1:27,23:32:50:0.460:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	27737198	rs4732610	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,9:32:23:0.391:2	0/1:20,5:33:25:0.200:2	0/1:1,2:32:3:0.667:2	0/1:0,22:33:22:1.00:2	0/1:0,20:31:20:1.00:2	0/1:26,10:33:36:0.278:2	0/1:13,13:32:26:0.500:2	0/1:21,18:32:39:0.462:2	0/1:0,21:33:21:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,9:29:9:1.00:2
chr8	27767171	rs2726991	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,50:31:51:0.980:2	0/1:1,38:31:39:0.974:2	0/1:3,4:32:7:0.571:2	0/1:0,68:31:68:1.00:2	0/1:1,45:31:46:0.978:2	0/1:0,55:31:55:1.00:2	0/1:1,64:30:65:0.985:2	0/1:45,33:31:78:0.423:2	0/1:47,34:32:81:0.420:2	./.	0/1:0,42:31:42:1.00:2
chr8	27886903	rs9314357	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,77:32:77:1.00:2	0/1:1,46:32:47:0.979:2	./.	./.	0/1:42,30:31:72:0.417:2	./.	./.	./.	0/1:50,57:33:107:0.533:2	./.	0/1:35,46:33:81:0.568:2
chr8	27898580	rs17058502	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,28:31:58:0.483:2	./.	./.	0/1:56,45:32:101:0.446:2	./.	0/1:32,25:32:57:0.439:2	./.
chr8	27903069	rs13279787	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,61:32:108:0.565:2	0/1:21,20:32:41:0.488:2	0/1:3,5:32:8:0.625:2	0/1:0,117:31:117:1.00:2	0/1:0,55:30:55:1.00:2	0/1:83,55:31:138:0.399:2	0/1:0,69:31:69:1.00:2	./.	0/1:0,103:31:103:1.00:2	0/1:40,39:31:79:0.494:2	./.
chr8	27915830	rs4336563	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:33:63:1.00:2	0/1:0,51:33:51:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,96:33:96:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,87:32:87:1.00:2
chr8	27918057	rs7817227	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,64:29:67:1.00:2	0/1:0,36:27:36:1.00:2	./.	0/1:0,88:28:88:1.00:2	0/1:0,71:30:71:1.00:2	0/1:0,83:29:83:1.00:2	0/1:0,86:29:86:1.00:2	0/1:0,93:29:93:1.00:2	0/1:0,77:29:77:1.00:2	0/1:0,79:29:79:1.00:2	0/1:0,81:27:81:1.00:2
chr8	27925204	rs4732620	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,94:32:97:0.969:2	0/1:0,72:31:72:1.00:2	./.	./.	0/1:99,55:32:154:0.357:2	0/1:78,68:32:146:0.466:2	./.	0/1:1,160:32:161:0.994:2	./.	0/1:54,50:32:104:0.481:2	0/1:0,120:32:120:1.00:2
chr8	27927849	rs6998705	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:33:45:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,52:32:52:1.00:2
chr8	27931875	rs17058575	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,72:32:130:0.554:2	./.	./.	./.	./.	./.	./.
chr8	28206275	rs1046511	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,62:29:62:1.00:2	0/1:0,26:29:26:1.00:2	./.	0/1:60,35:30:95:0.368:2	./.	./.	./.	./.	./.	0/1:28,25:30:53:0.472:2	0/1:2,64:30:66:0.970:2
chr8	28304769	rs1390963	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,66:30:66:1.00:2	0/1:0,31:31:31:1.00:2	./.	./.	./.	./.	0/1:51,14:30:65:0.215:2	0/1:51,26:29:77:0.338:2	./.	./.	0/1:61,50:29:111:0.450:2
chr8	28384712	rs2241802	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:87,78:33:165:0.473:2	0/1:43,31:33:74:0.419:2	0/1:10,3:34:13:0.231:2	./.	0/1:61,42:33:103:0.408:2	0/1:4,101:33:105:0.962:2	0/1:55,43:32:98:0.439:2	./.	0/1:83,67:34:151:0.447:2	0/1:0,106:33:106:1.00:2	0/1:0,170:32:170:1.00:2
chr8	28574522	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,74:31:166:0.446:2	./.	./.	./.	./.	./.
chr8	28574803	rs240951	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.	0/1:39,40:31:79:0.506:2	./.	0/1:68,48:31:116:0.414:2	0/1:58,55:32:113:0.487:2	./.	./.	0/1:29,30:32:59:0.508:2
chr8	28707739	rs138508020	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,31:31:59:0.525:2	./.	./.	./.	./.	./.	./.
chr8	28929768	rs375860013	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:32:158:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	28950309	rs17526980	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,35:30:67:0.522:2	./.	./.	./.	./.	./.
chr8	28984042	rs3793435	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,122:33:124:0.984:2	0/1:1,58:32:59:0.983:2	./.	0/1:68,70:32:138:0.507:2	0/1:48,27:32:75:0.360:2	./.	0/1:1,58:32:59:0.983:2	0/1:62,53:32:115:0.461:2	0/1:0,121:33:121:1.00:2	0/1:0,69:32:69:1.00:2	0/1:66,66:33:132:0.500:2
chr8	29005093	rs6986672	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,70:33:72:0.972:2	0/1:0,44:31:44:1.00:2	0/1:4,5:32:9:0.556:2	0/1:0,86:33:87:1.00:2	0/1:1,48:32:49:0.980:2	0/1:31,39:32:70:0.557:2	0/1:0,49:33:49:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,83:33:83:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,90:33:90:1.00:2
chr8	29006207	rs200170374	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,57:32:120:0.475:2	0/1:27,31:32:58:0.534:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	29197672	rs583034	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	0/1:0,6:31:6:1.00:2	0/1:9,6:29:15:0.400:2	0/1:13,7:29:20:0.350:2	./.	./.	0/1:0,17:31:17:1.00:2	0/1:0,10:30:10:1.00:2
chr8	29927300	rs6468093	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,66:34:66:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,67:32:68:1.00:2
chr8	29927321	rs6468094	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:30:52:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,41:29:41:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,69:29:69:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,66:30:66:1.00:2
chr8	29927399	rs150629797	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,15:32:33:0.455:2	0/1:8,3:31:11:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	29953085	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr8	29961951	rs11557703	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:95,67:30:162:0.414:2	0/1:54,48:30:102:0.471:2	./.	0/1:109,79:29:188:0.420:2	./.	./.	0/1:83,93:30:176:0.528:2	0/1:115,81:30:196:0.413:2	./.	./.	0/1:99,81:29:180:0.450:2
chr8	29989564	rs7844812	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,27:30:82:0.329:2	0/1:18,19:32:37:0.514:2	0/1:13,10:33:23:0.435:2	0/1:51,44:31:95:0.463:2	0/1:5,78:32:83:0.940:2	0/1:0,85:32:86:1.00:2	0/1:55,51:31:106:0.481:2	0/1:67,56:33:123:0.455:2	0/1:0,117:32:117:1.00:2	0/1:0,86:32:86:1.00:2	0/1:74,50:31:124:0.403:2
chr8	29989835	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:31:121:0.033:2	./.	./.	./.	./.
chr8	29996158	rs4733141	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,113:32:113:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,19:31:19:1.00:2	0/1:86,96:32:182:0.527:2	0/1:4,161:31:165:0.976:2	0/1:0,158:32:158:1.00:2	0/1:2,179:32:181:0.989:2	0/1:0,181:31:181:1.00:2	0/1:0,148:33:148:1.00:2	0/1:0,157:32:157:1.00:2	0/1:70,77:31:147:0.524:2
chr8	29996256	rs7813902	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:31:68:1.00:2	0/1:2,33:32:35:0.943:2	0/1:0,12:32:12:1.00:2	0/1:50,30:32:80:0.375:2	0/1:2,72:32:74:0.973:2	0/1:0,85:32:85:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,79:33:79:1.00:2	0/1:0,69:32:69:1.00:2	0/1:32,31:32:64:0.492:2
chr8	30002010	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:32:75:0.053:2	./.	./.	./.
chr8	30407077	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,4:31:36:0.111:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	30608976	rs2911690	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,101:32:101:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,88:31:88:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,109:31:109:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,90:32:90:1.00:2
chr8	30655221	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:32:156:0.026:2	./.
chr8	30655228	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,6:32:156:0.038:2	./.
chr8	30655255	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:32:137:0.029:2	./.
chr8	30694577	rs150606321	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,77:32:194:0.397:2
chr8	30695226	rs2720593	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:31:41:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,47:30:47:1.00:2	0/1:1,47:30:48:0.979:2	0/1:0,50:30:50:1.00:2	0/1:0,43:30:44:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,70:31:71:1.00:2
chr8	30699650	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:33:112:0.036:2	./.
chr8	30700598	rs61740968	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,62:32:102:0.608:2	./.	./.	0/1:71,52:32:123:0.423:2	./.	0/1:81,93:33:174:0.534:2
chr8	30700811	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,3:34:52:0.058:2	./.	./.	./.	./.	./.	./.
chr8	30701995	rs61732457	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,29:31:56:0.518:2	./.	./.	0/1:50,29:34:79:0.367:2	./.	0/1:38,45:33:83:0.542:2
chr8	30702525	rs323344	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,8:32:16:0.500:2	0/1:2,81:32:83:0.976:2	./.	./.	./.	./.	./.	./.	./.
chr8	30702602	rs323345	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,7:33:11:0.636:2	0/1:1,108:33:110:0.991:2	./.	./.	./.	./.	./.	./.	./.
chr8	30702785	rs61736163	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,51:33:93:0.548:2	./.	./.	./.	./.	./.	./.	./.
chr8	30702991	rs1362912	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:30:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	30703431	rs323346	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:32:11:1.00:2	0/1:2,51:33:53:0.962:2	./.	./.	./.	./.	./.	./.	./.
chr8	30704725	rs62000451	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,32:31:67:0.478:2	./.	./.	./.	./.	./.	./.	./.
chr8	30706224	rs323347	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:31:7:1.00:2	0/1:0,69:30:69:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr8	30924557	rs1800389	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:32:38:1.00:2	0/1:1,35:31:36:0.972:2	0/1:0,2:31:2:1.00:2	0/1:2,50:30:52:0.962:2	0/1:0,31:31:31:1.00:2	0/1:21,31:30:52:0.596:2	0/1:0,41:31:41:1.00:2	0/1:34,17:30:51:0.333:2	0/1:37,26:32:63:0.413:2	0/1:38,20:29:58:0.345:2	0/1:2,62:32:66:0.969:2
chr8	30938704	rs1800391	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,45:32:128:0.352:2	./.	./.	./.	0/1:76,50:32:126:0.397:2	0/1:81,52:33:133:0.391:2	./.	0/1:81,60:32:141:0.426:2
chr8	30958379	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:33:54:0.074:2	./.	./.	./.
chr8	30969222	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:32:91:0.044:2	./.	./.	./.	./.
chr8	30973957	rs1800392	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:32:63:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,8:30:8:1.00:2	0/1:67,46:31:114:0.407:2	0/1:29,20:29:49:0.408:2	0/1:42,37:30:79:0.468:2	0/1:31,23:31:54:0.426:2	./.	./.	0/1:36,43:31:79:0.544:2	./.
chr8	30999280	rs1801195	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,18:32:50:0.360:2	0/1:17,10:32:27:0.370:2	0/1:0,4:31:4:1.00:2	0/1:32,18:32:50:0.360:2	0/1:19,21:31:40:0.525:2	0/1:30,24:30:54:0.444:2	0/1:13,22:31:35:0.629:2	./.	./.	0/1:17,24:32:41:0.585:2	./.
chr8	30999291	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:33:66:0.061:2	./.	./.
chr8	31024638	rs1801196	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:69,62:32:131:0.473:2	0/1:39,39:32:78:0.500:2	./.	0/1:90,88:32:178:0.494:2	./.	0/1:83,77:31:160:0.481:2	./.	./.	0/1:73,89:32:162:0.549:2	0/1:74,61:32:135:0.452:2	0/1:91,66:32:157:0.420:2
chr8	31024654	rs1346044	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,77:29:167:0.461:2	0/1:78,79:29:157:0.503:2	./.	0/1:79,71:29:150:0.473:2	0/1:1,144:30:145:0.993:2	0/1:82,68:31:150:0.453:2	./.	0/1:61,81:30:142:0.570:2
chr8	32453358	rs3924999	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,12:34:18:0.667:2	0/1:5,3:34:8:0.375:2	./.	./.	0/1:6,7:32:13:0.538:2	0/1:0,11:32:11:1.00:2	0/1:1,10:32:11:0.909:2	0/1:7,4:32:11:0.364:2	0/1:0,14:33:14:1.00:2	0/1:0,3:31:3:1.00:2	0/1:5,12:33:17:0.706:2
chr8	32505633	rs35641374	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,52:31:112:0.464:2	./.	./.	./.
chr8	32505799	rs199722954	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,14:28:155:0.090:2	./.
chr8	32611970	rs74942016	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:70,54:31:124:0.435:2	0/1:59,39:32:98:0.398:2	./.	0/1:105,68:31:173:0.393:2	./.	./.	./.	./.	0/1:104,87:32:191:0.455:2	./.	./.
chr8	32613983	rs10503929	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,14:31:29:0.483:2	./.	./.	./.	./.	./.	0/1:24,16:28:40:0.400:2
chr8	32617888	rs62497784	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,13:33:30:0.433:2	./.
chr8	32621652	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,4:32:19:0.211:2	./.	./.	./.	./.	./.	./.
chr8	33246538	rs16880849	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:93,82:29:175:0.469:2	0/1:86,60:29:146:0.411:2	0/1:32,16:30:48:0.333:2	0/1:104,82:30:186:0.441:2	./.	./.	./.	./.	./.	./.	./.
chr8	33246591	rs17855838	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:98,91:33:189:0.481:2	0/1:82,44:32:127:0.349:2	0/1:27,15:32:42:0.357:2	0/1:100,90:33:190:0.474:2	./.	./.	./.	./.	./.	./.	./.
chr8	33246685	rs16880852	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:75,57:31:133:0.432:2	0/1:68,40:31:108:0.370:2	0/1:11,9:31:20:0.450:2	0/1:94,67:30:161:0.416:2	./.	./.	./.	./.	./.	./.	./.
chr8	33246689	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,55:32:132:0.417:2	./.	./.	./.	./.
chr8	33356074	rs6468171	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:34,33:29:67:0.493:2	0/1:26,14:28:40:0.350:2	0/1:2,6:29:8:0.750:2	./.	0/1:1,60:29:61:0.984:2	0/1:1,92:28:93:0.989:2	0/1:33,31:28:64:0.484:2	0/1:0,69:29:69:1.00:2	0/1:72,41:31:113:0.363:2	./.	0/1:0,109:29:109:1.00:2
chr8	33369944	rs2304748	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:19,30:33:49:0.612:2	0/1:27,23:32:50:0.460:2	0/1:0,5:32:5:1.00:2	./.	0/1:19,18:31:37:0.486:2	0/1:1,72:32:73:0.986:2	0/1:22,16:34:38:0.421:2	0/1:1,87:32:88:0.989:2	0/1:34,47:33:81:0.580:2	./.	0/1:0,92:33:92:1.00:2
chr8	33369994	rs3098657	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:21,26:30:47:0.553:2	0/1:25,15:30:40:0.375:2	0/1:0,4:31:4:1.00:2	./.	0/1:2,27:30:29:0.931:2	0/1:0,72:29:72:1.00:2	0/1:16,15:29:31:0.484:2	0/1:0,55:29:55:1.00:2	0/1:33,32:31:65:0.492:2	./.	0/1:0,68:29:68:1.00:2
chr8	33408901	rs3735949	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,50:33:120:0.417:2
chr8	33416189	rs3735950	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,21:33:37:0.568:2	0/1:10,13:32:23:0.565:2	./.	./.	0/1:30,23:32:53:0.434:2	0/1:0,39:31:39:1.00:2	0/1:54,22:30:76:0.289:2	0/1:1,67:32:68:0.985:2	0/1:25,37:33:62:0.597:2	./.	0/1:33,28:32:61:0.459:2
chr8	33416222	rs3735951	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,22:33:40:0.550:2	0/1:11,15:32:26:0.577:2	./.	./.	0/1:29,28:32:57:0.491:2	0/1:0,47:32:47:1.00:2	0/1:52,29:31:81:0.358:2	0/1:0,65:32:65:1.00:2	0/1:36,39:32:75:0.520:2	./.	0/1:0,68:31:68:1.00:2
chr8	33454923	rs16881117	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,2:35:5:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	35541244	rs141886860	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,16:32:36:0.444:2	./.	./.	./.	./.
chr8	35606177	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:31:113:0.035:2	./.	./.	./.
chr8	35608195	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:34:175:0.023:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	35616848	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,3:30:28:0.107:2	./.	./.	./.	./.
chr8	36671806	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:30:113:0.035:2	./.	./.
chr8	36698092	rs192964666	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,26:33:89:0.292:2	./.	./.	./.
chr8	36746163	rs78605166	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,81:31:148:0.547:2	./.	./.	./.
chr8	36767024	rs28608091	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,32:30:66:0.485:2	0/1:18,17:27:35:0.486:2	./.	./.	./.	./.	0/1:28,22:27:50:0.440:2	0/1:34,30:29:64:0.469:2
chr8	36788479	rs16885577	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	0/1:28,26:31:54:0.481:2	0/1:27,18:32:45:0.400:2	./.	./.	0/1:17,27:32:44:0.614:2	0/1:31,20:32:51:0.392:2
chr8	37554884	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:31:43:0.093:2	./.	./.
chr8	37699195	rs4976898	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.
chr8	37728017	rs7817179	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,54:30:116:0.466:2	0/1:37,30:30:67:0.448:2	0/1:0,15:30:15:1.00:2	0/1:65,61:30:126:0.484:2	0/1:0,110:30:110:1.00:2	0/1:0,110:30:110:1.00:2	0/1:1,113:31:114:0.991:2	0/1:92,56:30:148:0.378:2	0/1:65,57:31:122:0.467:2	0/1:1,122:30:123:0.992:2	./.
chr8	37728019	rs7820872	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,54:32:113:0.478:2	0/1:35,30:31:65:0.462:2	0/1:0,15:32:15:1.00:2	0/1:63,61:31:124:0.492:2	0/1:0,110:32:110:1.00:2	0/1:0,110:32:110:1.00:2	0/1:1,113:32:114:0.991:2	0/1:91,56:32:147:0.381:2	0/1:63,57:32:120:0.475:2	0/1:0,122:32:122:1.00:2	./.
chr8	37728031	rs61741611	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,52:32:126:0.413:2
chr8	37730368	rs12541651	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,41:31:103:0.398:2	0/1:43,25:31:68:0.368:2	0/1:0,15:30:15:1.00:2	0/1:68,58:31:126:0.460:2	0/1:37,45:30:82:0.549:2	0/1:0,97:31:97:1.00:2	0/1:0,79:31:79:1.00:2	0/1:75,41:32:116:0.353:2	0/1:0,105:32:105:1.00:2	0/1:0,103:31:103:1.00:2	0/1:1,111:31:112:0.991:2
chr8	37730456	rs7341564	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,43:31:70:0.614:2	0/1:22,26:31:48:0.542:2	./.	./.	./.	0/1:43,51:31:94:0.543:2	0/1:33,33:32:66:0.500:2	0/1:44,30:31:74:0.405:2	./.	0/1:0,74:31:74:1.00:2	0/1:30,46:31:76:0.605:2
chr8	37734865	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:33:158:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	37794902	rs61735752	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,11:33:35:0.314:2	./.	./.
chr8	37823798	rs4994	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,11:29:46:0.239:2	./.	0/1:6,19:29:25:0.760:2	./.	./.	./.	./.
chr8	37963198	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:31:48:0.083:2	./.	./.	./.	./.	./.
chr8	37964628	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:31:113:0.035:2	./.	./.	./.	./.	./.
chr8	37985897	rs2843740	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,64:33:64:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,52:34:52:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,58:33:58:1.00:2
chr8	38005835	rs2229620	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:32:49:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,54:33:54:1.00:2	0/1:0,76:33:76:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,70:34:70:1.00:2	0/1:0,47:33:47:1.00:2	0/1:0,54:31:54:1.00:2
chr8	38091917	rs141644282	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,25:30:52:0.481:2	./.	./.	./.
chr8	38091918	rs150361106	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,25:30:53:0.472:2	./.	./.	./.
chr8	38095662	rs2306899	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,85:32:193:0.440:2	./.	./.	0/1:100,80:32:180:0.444:2	./.	./.	0/1:90,107:33:197:0.543:2	0/1:100,82:32:182:0.451:2
chr8	38162945	rs185811622	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,19:32:46:0.413:2	0/1:13,13:32:26:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	38176435	rs2234558	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,65:28:128:0.508:2	./.	./.	./.	./.	./.	./.
chr8	38184289	rs149768452	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:35:181:0.022:2	./.	./.
chr8	38184316	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:32:170:0.024:2	./.	./.
chr8	38188974	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:32:152:0.026:2	./.	./.
chr8	38205087	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:33:186:0.022:2	./.
chr8	38205091	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:31:195:0.026:2	./.	./.
chr8	38205233	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,3:33:56:0.054:2	./.	./.
chr8	38369982	rs150721903	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,21:32:44:0.477:2	0/1:25,10:32:35:0.286:2	./.	./.	./.	./.
chr8	38370154	rs2461325	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,28:31:46:0.609:2	./.	./.	./.
chr8	38385914	rs1378332	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,39:31:71:0.549:2	./.	./.
chr8	38677322	rs34235313	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,47:34:87:0.540:2	0/1:49,19:33:68:0.279:2	./.
chr8	38677932	rs2013586	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,19:33:35:0.543:2	./.	0/1:33,33:32:66:0.500:2	0/1:3,38:32:41:0.927:2	./.	./.	./.	./.
chr8	38684853	rs2037204	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,14:30:30:0.467:2	0/1:96,94:29:190:0.495:2	./.	0/1:104,86:29:190:0.453:2	0/1:4,150:29:155:0.974:2	./.	./.	./.	./.
chr8	38695996	rs2292741	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,5:32:16:0.313:2	./.	./.	./.	./.
chr8	38835666	rs4733961	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:29:41:1.00:2	0/1:0,24:28:24:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,55:29:55:1.00:2	0/1:0,45:29:45:1.00:2	0/1:0,47:28:47:1.00:2	0/1:2,54:29:56:0.964:2	0/1:0,45:29:45:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,41:28:41:1.00:2	0/1:1,40:29:41:0.976:2
chr8	38840024	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,65:31:151:0.430:2	./.	./.	./.	./.	./.
chr8	38848850	rs4733895	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,25:32:25:1.00:2	0/1:0,30:32:30:1.00:2	./.	0/1:0,46:31:46:1.00:2	0/1:0,35:31:35:1.00:2	0/1:1,27:30:28:0.964:2	0/1:1,34:31:35:0.971:2	0/1:0,46:31:46:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,52:31:52:1.00:2
chr8	38853813	rs145686862	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,38:30:65:0.585:2	./.	./.	./.	./.	./.
chr8	38854660	rs148707472	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,4:28:9:0.444:2	./.
chr8	38934858	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:130,4:30:134:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr8	38961191	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:30:116:0.034:2	./.	./.	./.
chr8	38965324	rs61753546	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,11:30:14:0.786:2	./.	./.	./.	./.
chr8	39080632	rs7845771	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:32:65:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,47:33:47:1.00:2	0/1:0,84:33:84:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,81:33:81:1.00:2	0/1:0,65:33:65:1.00:2	0/1:0,83:33:83:1.00:2	0/1:0,108:33:108:1.00:2
chr8	39091526	rs4515515	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,42:29:106:0.396:2	./.	./.	./.	./.	./.	./.	./.
chr8	39103596	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:196,4:34:200:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr8	39128387	rs4733994	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,78:31:193:0.404:2	./.	./.	./.	./.	./.	./.	./.
chr8	39131888	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:30:94:0.043:2	./.
chr8	39142264	rs7008808	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:104,92:31:196:0.469:2	0/1:98,83:32:181:0.459:2	./.	0/1:1,195:32:196:0.995:2	0/1:121,76:31:197:0.386:2	./.	0/1:115,80:31:195:0.410:2	0/1:107,90:33:197:0.457:2	0/1:105,94:33:199:0.472:2	0/1:113,80:32:193:0.415:2	0/1:2,192:32:194:0.990:2
chr8	39463823	rs13268577	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,54:33:105:0.514:2	0/1:34,31:32:65:0.477:2	./.	0/1:4,124:33:130:0.969:2	0/1:0,62:32:62:1.00:2	./.	0/1:2,55:33:57:0.965:2	0/1:79,73:33:152:0.480:2	0/1:53,68:34:121:0.562:2	0/1:63,47:33:110:0.427:2	0/1:0,170:33:170:1.00:2
chr8	39496029	rs12708194	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:31,35:30:66:0.530:2	0/1:2,189:31:191:0.990:2	0/1:2,190:30:192:0.990:2	0/1:102,90:30:192:0.469:2	0/1:105,90:30:195:0.462:2	0/1:127,68:30:195:0.349:2	./.	0/1:1,191:30:192:0.995:2	0/1:3,179:30:182:0.984:2
chr8	39618750	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:31:42:0.095:2	./.	./.	./.	./.	./.
chr8	39626997	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,3:34:55:0.055:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	39646261	rs75268423	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,32:33:57:0.561:2	./.
chr8	39694689	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,24:30:50:0.480:2	./.	./.	./.	./.	./.
chr8	39785483	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:32:174:0.023:2	./.	./.	./.
chr8	39840234	rs4736794	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,28:33:52:0.538:2	./.	0/1:43,29:33:72:0.403:2	./.	./.	0/1:26,23:33:49:0.469:2	./.	./.
chr8	39862881	rs10109853	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,22:32:23:0.957:2	./.	0/1:59,30:32:89:0.337:2	./.	./.	0/1:97,55:33:152:0.362:2	./.	0/1:2,102:33:104:0.981:2	./.
chr8	39862893	rs35212142	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,8:29:23:0.348:2	./.	./.	./.	./.	0/1:93,45:31:138:0.326:2	./.	./.	./.
chr8	39871135	rs2001923	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,15:33:50:0.300:2	0/1:22,11:32:33:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	39872866	rs2981161	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:33:85:1.00:2	0/1:0,56:33:56:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,131:33:131:1.00:2	0/1:0,102:33:102:1.00:2	0/1:0,134:33:134:1.00:2	0/1:1,132:33:133:0.992:2	0/1:0,159:32:159:1.00:2	0/1:0,128:34:128:1.00:2	0/1:1,93:33:94:0.989:2	0/1:0,125:33:125:1.00:2
chr8	39872935	rs4503083	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,55:31:119:0.462:2	0/1:57,52:31:109:0.477:2	0/1:55,62:31:117:0.530:2	./.	./.	0/1:0,106:32:106:1.00:2	0/1:34,44:31:78:0.564:2	./.
chr8	39873053	rs72632016	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,17:30:42:0.405:2	0/1:31,11:31:42:0.262:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	40011079	rs6474226	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,17:32:17:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,22:33:22:1.00:2
chr8	40011180	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,20:31:32:0.625:2	./.	./.
chr8	40012063	rs10199	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:33:39:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,55:33:55:1.00:2	./.	0/1:32,33:32:65:0.508:2	./.	./.	0/1:17,27:34:44:0.614:2	./.	0/1:40,30:33:70:0.429:2
chr8	40012684	rs28672910	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,60:31:61:0.984:2	./.	0/1:41,49:32:90:0.544:2	./.	./.	./.	./.
chr8	40438757	rs17851751	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:50,39:32:89:0.438:2	0/1:29,24:33:53:0.453:2	./.	./.	0/1:65,34:32:99:0.343:2	./.	0/1:50,35:33:85:0.412:2	./.	0/1:43,48:34:91:0.527:2	0/1:51,36:34:87:0.414:2	0/1:45,50:33:95:0.526:2
chr8	40438770	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:31:105:0.038:2	./.	./.	./.
chr8	40532372	rs199902110	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:30:79:0.051:2	./.	./.	./.
chr8	41122934	rs142720509	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,60:28:110:0.545:2	0/1:28,40:29:68:0.588:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	41166531	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:33:60:0.067:2	./.	./.
chr8	41355096	rs17656952	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:26,13:30:39:0.333:2	0/1:23,10:32:33:0.303:2	./.	./.	./.	./.	./.	0/1:18,23:31:41:0.561:2	0/1:33,27:32:60:0.450:2	0/1:33,20:30:53:0.377:2	./.
chr8	41364617	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:33:80:0.050:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	41387809	rs34771611	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,9:32:37:0.243:2	./.	./.	./.	./.	./.	./.
chr8	41518031	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:31:70:0.058:2	./.	./.	./.	./.	./.
chr8	41525914	rs750625	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:112,77:30:189:0.407:2	0/1:61,36:31:97:0.371:2	0/1:18,9:29:28:0.333:2	./.	0/1:124,66:29:190:0.347:2	./.	0/1:122,63:29:185:0.341:2	0/1:113,72:29:185:0.389:2	./.	./.	0/1:116,65:30:181:0.359:2
chr8	41542093	rs34265667	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,26:30:54:0.481:2	./.	./.	0/1:23,35:31:58:0.603:2	./.	./.
chr8	41543675	rs34664882	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,74:29:177:0.418:2	./.	./.	0/1:119,69:30:188:0.367:2	./.	./.
chr8	41547748	rs7816734	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,28:31:49:0.571:2	./.	./.	0/1:17,20:32:37:0.541:2	./.	./.
chr8	41553928	rs504574	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,16:31:16:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,7:31:7:1.00:2	./.	./.	0/1:15,10:29:25:0.400:2	0/1:4,4:33:8:0.500:2	./.	./.	0/1:6,5:30:11:0.455:2	0/1:0,12:31:12:1.00:2
chr8	41559609	rs2304880	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,53:32:53:1.00:2	0/1:0,40:32:40:1.00:2	0/1:4,6:31:10:0.600:2	./.	./.	./.	0/1:51,54:32:105:0.514:2	./.	./.	./.	0/1:31,27:32:58:0.466:2
chr8	41563685	rs1137177	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:2,33:30:35:0.943:2	0/1:1,20:30:21:0.952:2	0/1:5,5:30:10:0.500:2	./.	./.	./.	0/1:39,37:30:76:0.487:2	./.	./.	./.	0/1:21,21:30:42:0.500:2
chr8	41566438	rs2304877	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,20:31:54:0.370:2	./.	./.	./.	./.	./.	./.
chr8	41571692	rs61753679	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,21:28:37:0.568:2	./.	./.	./.	0/1:11,14:28:25:0.560:2	0/1:10,17:29:27:0.630:2
chr8	41574555	rs28533718	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:32:13:0.538:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	41583294	rs2304873	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:31:7:0.857:2	0/1:0,10:31:10:1.00:2	./.	./.	./.	./.	./.	./.
chr8	41583441	rs6982971	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,46:31:143:0.322:2	./.	./.	./.	./.	./.	./.
chr8	41585438	rs2304871	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,37:32:113:0.327:2	./.	./.	0/1:90,53:32:143:0.371:2	0/1:1,128:32:129:0.992:2	./.	0/1:44,41:32:85:0.482:2	./.
chr8	41585443	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,40:32:85:0.471:2	./.
chr8	41591534	rs61753680	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,53:29:117:0.453:2	./.	./.	./.	./.
chr8	41790866	rs2980901	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,9:30:24:0.375:2	./.	./.	./.	./.	./.	./.	./.
chr8	41790990	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:31:162:0.025:2	./.	./.
chr8	41791283	rs3739365	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,90:32:197:0.457:2	./.	./.	./.
chr8	41794934	rs13748	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:103,74:32:177:0.418:2	0/1:47,57:32:104:0.548:2	./.	./.	0/1:0,110:31:110:1.00:2	./.	./.	./.	./.	./.	./.
chr8	41798417	rs3824275	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,16:32:35:0.457:2	./.	./.	./.
chr8	41906095	rs3824276	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,4:33:92:0.043:2	./.	./.	0/1:64,63:32:127:0.496:2	./.	./.	./.
chr8	42036577	rs1136159	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,30:31:83:0.361:2	0/1:54,46:31:100:0.460:2	./.	./.	0/1:44,60:32:104:0.577:2
chr8	42044954	rs1058720	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,29:32:29:1.00:2	0/1:0,10:32:10:1.00:2	./.	0/1:0,19:32:19:1.00:2	0/1:0,22:31:22:1.00:2	0/1:6,12:30:18:0.667:2	./.	./.	0/1:0,19:32:19:1.00:2	./.	0/1:8,9:30:17:0.529:2
chr8	42044965	rs2020921	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,7:31:15:0.467:2	./.	./.	./.	./.
chr8	42231786	rs2073664	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,30:31:83:0.361:2	./.	0/1:38,27:32:65:0.415:2	./.
chr8	42256358	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,4:31:63:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr8	42294932	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:151,4:33:155:0.026:2	./.	./.	./.	./.	./.	./.
chr8	42401626	rs192936403	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,55:29:119:0.466:2	./.	./.	./.	./.	./.	./.	./.
chr8	42587065	rs4952	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,52:32:107:0.486:2	./.	0/1:38,44:31:82:0.537:2	./.	./.	./.	./.
chr8	42587659	rs4953	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,16:32:51:0.314:2	./.	0/1:9,5:25:14:0.357:2	./.	./.	./.	./.
chr8	42798572	rs34112280	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:32:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	42868466	rs368973857	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,30:33:44:0.682:2	./.	./.
chr8	42873572	rs368922457	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,70:32:150:0.467:2	./.	./.	./.
chr8	42940372	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:33:195:0.026:2	./.
chr8	43016605	rs370717845	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:33:99:0.040:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	43048977	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,4:34:98:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr8	43054553	rs1126058	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:30:57:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,69:30:69:1.00:2	0/1:0,96:29:96:1.00:2	0/1:1,96:29:97:0.990:2	0/1:0,121:30:121:1.00:2	0/1:0,101:30:101:1.00:2	0/1:0,81:30:81:1.00:2	0/1:0,79:30:79:1.00:2
chr8	43152446	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:125,4:31:129:0.031:2	./.	./.	./.	./.	./.	./.
chr8	43152470	rs181221204	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:146,4:33:150:0.027:2	./.	./.	./.	./.	./.	./.
chr8	43152471	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:144,4:32:148:0.027:2	./.	./.	./.	./.	./.	./.
chr8	43157138	rs199788574	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,4:31:14:0.286:2	0/1:81,28:31:109:0.257:2	0/1:46,12:31:58:0.207:2	0/1:101,19:31:120:0.158:2	0/1:62,4:31:66:0.061:2	0/1:79,11:32:90:0.122:2	./.	0/1:93,22:31:115:0.191:2	0/1:140,16:31:156:0.103:2
chr8	43157176	rs76712602	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:48,35:33:83:0.422:2	0/1:38,21:32:59:0.356:2	./.	./.	./.	./.	0/1:40,21:32:61:0.344:2	0/1:40,40:32:80:0.500:2	./.	./.	./.
chr8	48710955	rs7830743	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,20:33:46:0.435:2	0/1:25,19:31:44:0.432:2	./.	0/1:19,12:32:31:0.387:2	./.	./.	./.	./.
chr8	48719844	rs8178216	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,31:32:95:0.326:2	./.	./.
chr8	48739305	rs4278157	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:26,29:32:55:0.527:2	0/1:20,22:33:42:0.524:2	./.	./.	./.	./.	./.	0/1:46,39:31:85:0.459:2	./.	./.	0/1:10,22:32:32:0.688:2
chr8	48765338	rs376211703	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:32:38:0.079:2
chr8	48875544	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:32:78:0.051:2	./.
chr8	48885436	rs762679	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,16:31:16:1.00:2	0/1:0,133:32:133:1.00:2	0/1:75,37:31:112:0.330:2	0/1:2,150:31:152:0.987:2	0/1:0,96:32:96:1.00:2	0/1:87,74:31:161:0.460:2	0/1:0,136:33:136:1.00:2	0/1:96,68:32:164:0.415:2	0/1:105,62:32:167:0.371:2
chr8	49642357	rs61733121	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,10:29:27:0.370:2	./.	./.	./.	./.	./.	./.
chr8	49832720	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:30:133:0.030:2	./.	./.
chr8	49832947	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:119,4:31:123:0.033:2	./.	./.	./.	./.	./.	./.
chr8	49987772	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:31:167:0.024:2	./.
chr8	51306776	rs75930276	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,23:30:51:0.451:2	./.
chr8	51571149	rs78726152	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,34:32:76:0.447:2	./.
chr8	51571172	rs1911830	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:33:56:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,11:31:11:1.00:2	0/1:52,42:32:94:0.447:2	0/1:0,72:31:72:1.00:2	0/1:47,44:31:91:0.484:2	0/1:0,66:32:66:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,134:32:134:1.00:2	0/1:56,38:32:94:0.404:2	0/1:2,121:32:123:0.984:2
chr8	51617255	rs145454514	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,26:32:55:0.473:2	./.	./.	./.	./.
chr8	52232487	rs1052704	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,26:31:46:0.565:2	./.	./.	./.	0/1:27,18:31:45:0.400:2	./.	0/1:20,20:31:40:0.500:2	./.
chr8	52233408	rs7827446	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,22:32:72:0.306:2	./.	./.	./.	0/1:42,55:31:97:0.567:2	./.	0/1:38,30:31:68:0.441:2	./.
chr8	52258429	rs11774588	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,53:30:128:0.414:2	./.	./.	./.	0/1:48,39:32:87:0.448:2	./.
chr8	52284560	rs117752382	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,44:31:85:0.518:2	./.	./.	./.	./.	./.
chr8	52287282	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,4:34:26:0.154:2	./.
chr8	52321098	rs189489601	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,26:29:49:0.531:2	./.	./.	./.	./.	./.	./.
chr8	52321243	rs2977020	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:31:51:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,6:28:6:1.00:2	0/1:36,26:30:62:0.419:2	0/1:0,48:32:48:1.00:2	0/1:55,27:32:82:0.329:2	0/1:0,52:32:52:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,30:30:30:1.00:2
chr8	52321686	rs11985241	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,10:32:19:0.526:2	./.	./.	./.
chr8	52321966	rs201280324	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,12:29:28:0.429:2	./.	./.	./.	./.
chr8	52321991	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,11:31:33:0.333:2	0/1:6,13:31:19:0.684:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	52325767	rs16916207	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,18:33:43:0.419:2	./.	./.	./.
chr8	52366200	rs6473599	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:94,68:32:162:0.420:2	0/1:65,63:32:128:0.492:2	0/1:0,28:32:28:1.00:2	0/1:0,188:31:188:1.00:2	0/1:0,195:31:195:1.00:2	0/1:0,192:31:192:1.00:2	0/1:0,180:31:180:1.00:2	0/1:100,96:31:196:0.490:2	0/1:0,192:32:192:1.00:2	0/1:0,189:32:189:1.00:2	0/1:0,188:32:188:1.00:2
chr8	52366217	rs6473600	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,67:31:183:0.366:2	./.	./.	./.	./.	./.	0/1:92,86:32:178:0.483:2	./.
chr8	52366300	rs7833909	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,31:32:77:0.403:2	./.	./.	./.	./.	./.	0/1:44,29:31:73:0.397:2	./.
chr8	52396241	rs7837348	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,23:28:47:0.489:2	./.	./.	./.	./.	./.	./.	./.
chr8	52732959	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,6:25:75:0.080:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	52732961	rs150537425	G	A,T	.	PASS	AC=3,1;AF=0.250,0.083;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9-variant10	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	0/2:31:73:0.055:2	./.	./.	0/1:32:64:0.063:2	./.	0/1:31:44:0.114:2	./.	./.	./.	./.	0/1:28:101:0.079:2
chr8	52733003	rs79195845	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:127,5:29:132:0.038:2	./.	./.	0/1:108,10:31:118:0.085:2	0/1:76,5:33:81:0.062:2	0/1:85,7:32:92:0.076:2	./.	0/1:116,9:28:125:0.072:2	./.	./.	0/1:157,11:31:169:0.065:2
chr8	52733050	rs12335014	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,91:32:182:0.500:2	0/1:47,58:32:105:0.552:2	0/1:11,11:31:22:0.500:2	0/1:119,70:31:189:0.370:2	0/1:78,53:30:131:0.405:2	0/1:83,80:30:163:0.491:2	./.	0/1:7,179:31:186:0.962:2	0/1:5,175:32:180:0.972:2	./.	0/1:7,172:31:179:0.961:2
chr8	52733055	rs117334240	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:172,5:32:178:0.028:2	./.	./.	0/1:182,6:32:188:0.032:2	./.	./.	./.	./.	./.	./.	0/1:181,6:33:187:0.032:2
chr8	52733076	rs77409139	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:155,22:31:177:0.124:2	0/1:102,18:32:120:0.150:2	0/1:25,3:32:28:0.107:2	0/1:162,21:32:183:0.115:2	0/1:134,30:31:164:0.183:2	0/1:163,16:32:179:0.089:2	0/1:158,16:32:174:0.092:2	0/1:157,13:32:170:0.076:2	0/1:168,7:32:175:0.040:2	0/1:177,14:32:191:0.073:2	0/1:163,23:32:186:0.124:2
chr8	52733079	rs75865149	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:169,5:29:175:0.029:2	0/1:114,5:32:119:0.042:2	./.	0/1:178,5:31:184:0.027:2	0/1:155,14:32:169:0.083:2	0/1:179,5:31:184:0.027:2	./.	./.	./.	0/1:185,5:32:191:0.026:2	0/1:172,12:32:184:0.065:2
chr8	52733110	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:149,6:33:155:0.039:2	./.	./.	0/1:159,8:32:167:0.048:2	./.	0/1:161,5:33:166:0.030:2	0/1:163,4:32:167:0.024:2	0/1:155,6:32:161:0.037:2	0/1:160,8:31:168:0.048:2	0/1:154,4:32:158:0.025:2	./.
chr8	52733121	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:146,4:32:150:0.027:2	0/1:155,4:31:159:0.025:2	./.	0/1:137,6:31:143:0.042:2	0/1:150,4:32:154:0.026:2	0/1:148,4:32:152:0.026:2	./.
chr8	52733127	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,5:32:143:0.035:2	./.
chr8	52733128	rs62506083	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,76:31:142:0.535:2	0/1:49,55:32:104:0.529:2	0/1:18,12:33:30:0.400:2	0/1:65,87:32:152:0.572:2	0/1:60,77:31:137:0.562:2	0/1:71,77:32:148:0.520:2	0/1:72,65:32:137:0.474:2	0/1:41,96:31:137:0.701:2	0/1:74,68:32:142:0.479:2	0/1:56,87:32:143:0.608:2	0/1:64,81:31:145:0.559:2
chr8	52733143	rs111785933	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:133,4:33:137:0.029:2	./.	./.	0/1:152,5:32:157:0.032:2	./.	0/1:158,5:32:164:0.031:2	./.
chr8	52733144	rs200246241	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:145,12:32:157:0.076:2	0/1:105,5:32:110:0.045:2	./.	0/1:163,9:31:172:0.052:2	0/1:132,5:31:137:0.036:2	0/1:142,7:32:149:0.047:2	0/1:131,5:32:136:0.037:2	0/1:149,10:31:159:0.063:2	0/1:134,14:33:148:0.095:2	0/1:157,6:32:163:0.037:2	0/1:164,7:29:171:0.041:2
chr8	52733148	rs76104220	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,6:31:29:0.207:2	0/1:157,22:31:179:0.123:2	0/1:126,15:31:141:0.106:2	0/1:124,27:31:153:0.179:2	0/1:111,19:32:130:0.146:2	0/1:140,23:31:163:0.141:2	0/1:131,21:33:152:0.138:2	0/1:131,36:32:167:0.216:2	./.
chr8	52733164	rs149898988	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:165,11:30:176:0.063:2	0/1:95,8:31:103:0.078:2	0/1:25,4:30:29:0.138:2	0/1:183,7:30:190:0.037:2	0/1:119,15:29:134:0.112:2	0/1:164,10:31:174:0.057:2	./.	0/1:163,19:28:183:0.104:2	0/1:162,10:31:172:0.058:2	0/1:180,6:31:187:0.032:2	0/1:181,6:28:187:0.032:2
chr8	52733196	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,7:30:151:0.046:2	./.	./.	./.	./.	./.
chr8	52733227	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:124,6:29:130:0.046:2	./.	./.	./.	./.	0/1:133,6:31:139:0.043:2	0/1:161,4:33:165:0.024:2	./.	0/1:168,4:33:172:0.023:2	./.	0/1:137,5:33:143:0.035:2
chr8	52733228	rs73592211	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:107,20:31:127:0.157:2	0/1:68,20:30:88:0.227:2	./.	0/1:132,28:31:160:0.175:2	0/1:120,22:29:143:0.155:2	0/1:108,28:29:136:0.206:2	0/1:133,35:30:168:0.208:2	0/1:149,26:32:175:0.149:2	0/1:130,41:31:171:0.240:2	0/1:103,30:32:134:0.226:2	0/1:118,25:31:143:0.175:2
chr8	52733231	rs75748152	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:110,15:30:125:0.120:2	0/1:78,8:32:86:0.093:2	./.	0/1:143,16:30:159:0.101:2	0/1:129,14:29:143:0.098:2	0/1:115,20:30:135:0.148:2	0/1:146,20:32:166:0.120:2	0/1:156,18:32:174:0.103:2	0/1:149,20:33:169:0.118:2	0/1:113,17:33:130:0.131:2	0/1:127,15:32:143:0.106:2
chr8	52733242	rs79820636	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:86,20:32:106:0.189:2	0/1:72,9:32:81:0.111:2	./.	./.	0/1:118,12:32:132:0.092:2	0/1:92,25:31:118:0.214:2	0/1:145,8:32:155:0.052:2	0/1:147,7:31:154:0.045:2	0/1:144,13:32:158:0.083:2	0/1:93,11:32:106:0.106:2	0/1:104,15:32:119:0.126:2
chr8	52746153	rs9298462	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,29:31:54:0.537:2	0/1:23,8:30:31:0.258:2	0/1:7,3:30:10:0.300:2	0/1:39,11:30:50:0.220:2	0/1:22,10:30:32:0.313:2	0/1:26,25:30:51:0.490:2	./.	0/1:0,31:29:31:1.00:2	0/1:0,57:31:57:1.00:2	./.	0/1:0,43:30:43:1.00:2
chr8	53062412	rs16917324	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,76:29:195:0.392:2	./.	./.	./.
chr8	53071461	rs2278152	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,36:30:73:0.493:2	./.	./.	0/1:51,45:31:96:0.469:2	./.	./.	./.	0/1:34,54:30:88:0.614:2
chr8	53084534	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,4:32:101:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr8	53124690	rs188630576	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.
chr8	53537316	rs1129660	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,53:30:124:0.427:2	./.	./.	./.	0/1:72,41:30:113:0.363:2	0/1:1,92:31:93:0.989:2	0/1:53,65:30:118:0.551:2	./.
chr8	53555069	rs2305427	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,8:33:14:0.571:2	0/1:69,99:33:168:0.589:2	./.	./.	./.	0/1:85,57:32:142:0.401:2	0/1:0,135:33:135:1.00:2	0/1:75,59:33:134:0.440:2	./.
chr8	53569680	rs62499947	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,15:32:40:0.375:2	./.	./.	0/1:37,31:33:68:0.456:2
chr8	53586706	rs17337252	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:164,6:31:170:0.035:2	./.	0/1:6,11:30:17:0.647:2	0/1:1,164:29:165:0.994:2	./.	0/1:110,75:29:185:0.405:2	./.	0/1:2,145:29:147:0.986:2	0/1:3,184:30:187:0.984:2	0/1:0,126:30:126:1.00:2	0/1:84,105:29:189:0.556:2
chr8	53852871	rs33977775	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,11:32:24:0.458:2	0/1:5,10:31:15:0.667:2	./.	./.	./.	0/1:39,20:29:59:0.339:2	0/1:36,39:31:75:0.520:2	./.	./.	0/1:22,15:30:37:0.405:2	./.
chr8	53853160	rs75387626	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,6:30:31:0.194:2	./.	./.	./.	0/1:17,6:27:23:0.261:2	./.	./.
chr8	54141880	rs9282808	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,28:31:61:0.459:2	./.
chr8	54142052	rs78517449	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,69:31:131:0.527:2	./.
chr8	54142154	rs16918875	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,43:29:87:0.494:2	./.
chr8	54142157	rs702764	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,54:29:104:0.519:2	./.	0/1:46,42:29:88:0.477:2	./.
chr8	54852232	rs373302571	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:29:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	54906251	rs185387224	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,51:31:128:0.398:2	./.
chr8	55014320	rs200508035	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,3:31:29:0.103:2	./.	./.	./.	./.	./.
chr8	55014350	rs202247566	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,3:29:17:0.176:2	./.
chr8	55047937	rs375605064	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	55055311	rs149906233	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:29:102:0.039:2	./.
chr8	55055315	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:31:96:0.042:2	./.
chr8	55533582	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,5:30:144:0.035:2	./.
chr8	55539057	rs444772	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,8:32:20:0.400:2	./.	0/1:13,7:30:20:0.350:2	0/1:19,8:31:27:0.296:2	./.	./.	0/1:11,7:32:18:0.389:2	0/1:17,9:33:26:0.346:2
chr8	55539395	rs2293869	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,23:32:50:0.460:2	0/1:18,7:31:25:0.280:2	0/1:0,3:30:3:1.00:2	0/1:22,14:30:36:0.389:2	0/1:12,8:30:20:0.400:2	0/1:25,23:30:48:0.479:2	0/1:19,19:31:38:0.500:2	0/1:1,44:30:45:0.978:2	0/1:0,49:32:49:1.00:2	./.	0/1:30,24:32:54:0.444:2
chr8	55540141	rs114557304	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,80:33:164:0.488:2
chr8	55541226	rs35084330	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,24:31:37:0.649:2
chr8	55541450	rs446227	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,51:32:113:0.451:2	./.	0/1:52,48:31:101:0.480:2	0/1:38,41:31:79:0.519:2	./.	./.	0/1:61,46:31:107:0.430:2	./.
chr8	55541513	rs414352	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,66:32:106:0.623:2	./.	0/1:56,33:31:90:0.371:2	0/1:40,41:32:81:0.506:2	./.	./.	0/1:51,36:32:87:0.414:2	0/1:67,78:32:145:0.538:2
chr8	55541617	rs441800	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,44:33:100:0.440:2	./.	0/1:42,51:32:93:0.548:2	0/1:59,47:33:106:0.443:2	./.	./.	0/1:58,43:33:101:0.426:2	./.
chr8	55542540	rs61739567	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,20:32:54:0.370:2	0/1:26,16:31:42:0.381:2	0/1:0,12:31:12:1.00:2	0/1:42,19:31:61:0.311:2	0/1:35,13:32:48:0.271:2	0/1:46,29:30:75:0.387:2	0/1:27,25:31:52:0.481:2	0/1:0,58:30:58:1.00:2	0/1:2,63:31:65:0.969:2	./.	0/1:58,29:30:87:0.333:2
chr8	56015422	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,5:33:73:0.068:2	./.	./.	./.	./.	./.	./.	./.
chr8	56015849	rs193225697	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,55:31:131:0.420:2	./.	./.	./.
chr8	56686224	rs1818	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,19:32:52:0.365:2	0/1:18,11:32:29:0.379:2	0/1:0,9:32:9:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,37:32:37:1.00:2	0/1:35,35:32:70:0.500:2	0/1:0,54:32:54:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,58:34:58:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,65:32:65:1.00:2
chr8	56699236	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:34:132:0.030:2	./.	./.
chr8	56708572	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,15:19:153:0.098:2
chr8	56708577	.	T	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:132,19:12:152:0.126:2	./.	0/1:126,29:9:155:0.187:2	./.	0/1:128,23:9:151:0.152:2	./.	0/1:134,10:18:146:0.069:2	./.
chr8	56708582	rs61753686	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,80:29:152:0.537:2	./.	./.	./.	./.	./.	./.	./.
chr8	56708701	rs10100659	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,22:32:40:0.550:2	0/1:23,8:33:31:0.258:2	./.	./.	./.	0/1:24,21:31:45:0.467:2	./.	./.	./.	./.	./.
chr8	56711713	rs10109493	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,12:32:26:0.462:2	0/1:12,4:32:16:0.250:2	./.	./.	./.	0/1:17,10:32:27:0.370:2	./.	./.	./.	./.	./.
chr8	56711721	rs143298001	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,18:31:32:0.563:2	./.	./.	./.	./.	./.	./.	./.
chr8	56723557	rs7823773	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,37:32:73:0.507:2	0/1:22,39:32:61:0.639:2	./.	./.	./.	0/1:22,29:32:51:0.569:2	./.	./.	./.	./.	./.
chr8	56866472	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:30:47:0.085:2	./.	./.	./.	./.
chr8	56910951	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:33:123:0.033:2	./.	./.	./.	./.
chr8	56985814	rs1050403	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,10:32:16:0.625:2	./.	./.	./.	./.	0/1:19,7:31:26:0.269:2	0/1:8,8:32:16:0.500:2	./.	./.	./.	0/1:11,12:30:23:0.522:2
chr8	56986648	rs11537559	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,6:19:31:0.194:2	./.	0/1:13,3:29:16:0.188:2	./.
chr8	57026229	rs35392772	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:32:11:0.273:2	./.	./.	./.	0/1:79,66:31:146:0.455:2	./.	./.	./.	0/1:42,46:30:88:0.523:2
chr8	57078933	rs35883156	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:19,24:32:43:0.558:2	0/1:14,13:33:27:0.481:2	0/1:6,3:32:9:0.333:2	./.	./.	./.	0/1:24,21:30:45:0.467:2	./.	./.	./.	0/1:43,23:32:66:0.348:2
chr8	57285647	rs10091783	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,96:32:97:0.990:2	0/1:3,131:32:134:0.978:2	0/1:50,51:32:101:0.505:2	0/1:78,73:32:151:0.483:2	./.	./.	./.
chr8	57294571	rs10216409	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,16:32:17:0.941:2	0/1:0,60:32:60:1.00:2	0/1:35,12:32:49:0.255:2	0/1:16,12:32:28:0.429:2	./.	./.	./.
chr8	57876582	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:33:94:0.043:2	./.	./.
chr8	59060245	rs77511139	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,28:31:79:0.354:2	0/1:25,14:32:39:0.359:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	59060275	rs4738649	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:32,41:30:73:0.562:2	0/1:13,22:28:35:0.629:2	./.	./.	0/1:31,22:28:53:0.415:2	0/1:37,20:29:57:0.351:2	0/1:26,26:30:52:0.500:2	0/1:67,4:31:71:0.056:2	0/1:50,41:30:91:0.451:2	./.	./.
chr8	59060725	rs141893293	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,5:21:26:0.192:2	./.	./.	./.	./.	0/1:18,6:17:24:0.250:2	0/1:8,4:21:12:0.333:2	./.
chr8	59060868	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:113,21:13:134:0.157:2	./.	./.	./.	./.	./.	./.	0/1:104,16:12:121:0.133:2
chr8	59061072	rs56862248	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,6:34:11:0.545:2	0/1:34,28:33:62:0.452:2	./.	./.	./.	./.	./.	./.	./.
chr8	59329438	rs13277646	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,27:33:57:0.474:2	0/1:16,14:31:31:0.467:2	0/1:31,27:32:58:0.466:2	./.	0/1:29,26:33:55:0.473:2	./.	./.	0/1:29,15:34:44:0.341:2
chr8	59347051	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:32:133:0.030:2	./.	./.	./.
chr8	59347058	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:34:118:0.034:2	./.	./.	./.
chr8	59409479	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:32:91:0.044:2	./.	./.	./.	./.
chr8	59412647	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:36:128:0.031:2	./.	./.
chr8	59488520	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:33:65:0.062:2	./.	./.	./.
chr8	59488545	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:30:70:0.057:2	./.	./.	./.
chr8	59488557	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:28:68:0.059:2	./.	./.	./.
chr8	59498218	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:31:67:0.060:2	./.
chr8	59512334	rs2680903	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:32:23:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,16:32:16:1.00:2	0/1:17,4:31:21:0.190:2	0/1:0,24:32:24:1.00:2	0/1:0,17:32:17:1.00:2	0/1:18,12:32:30:0.400:2	0/1:0,41:32:41:1.00:2	0/1:9,13:32:22:0.591:2	0/1:0,32:31:32:1.00:2
chr8	59535835	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:33:55:0.073:2	./.	./.
chr8	59535836	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:34:53:0.075:2	./.	./.
chr8	59547804	rs10113830	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,17:32:41:0.415:2	0/1:10,10:31:20:0.500:2	./.	./.	./.	0/1:31,14:30:45:0.311:2	0/1:16,6:31:22:0.273:2	./.	./.	./.	./.
chr8	59548110	rs76597186	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,8:33:21:0.381:2	./.	./.	./.	./.	0/1:11,10:32:21:0.476:2	./.
chr8	59572207	rs183027756	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,9:28:15:0.600:2
chr8	59739438	rs56215946	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,29:28:62:0.468:2	0/1:47,53:28:100:0.530:2
chr8	60031526	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,17:10:94:0.181:2	0/1:75,20:11:95:0.211:2	./.	./.
chr8	61178567	rs61743130	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,12:31:34:0.353:2	./.	./.	./.	./.	./.	./.
chr8	61178574	rs7464181	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,24:33:40:0.600:2	0/1:18,8:33:26:0.308:2	0/1:0,3:31:3:1.00:2	0/1:30,28:32:58:0.483:2	0/1:21,11:32:32:0.344:2	0/1:26,5:32:31:0.161:2	0/1:22,23:32:45:0.511:2	./.	0/1:35,21:33:56:0.375:2	./.	./.
chr8	61654294	rs373868449	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:31:135:0.030:2	./.	./.	./.	./.
chr8	61748718	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:31:111:0.036:2	./.	./.	./.
chr8	61757614	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,2:36:6:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	61764800	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,29:32:65:0.446:2	0/1:17,17:32:34:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	61765419	rs6999971	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,13:31:28:0.464:2	./.	0/1:23,20:31:43:0.465:2	./.	0/1:14,11:32:25:0.440:2	./.
chr8	61769195	rs2272727	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,43:28:105:0.410:2	./.	./.	./.	./.	./.	./.
chr8	62430168	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:33:121:0.033:2
chr8	62460705	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:34:171:0.023:2
chr8	62489386	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:28:77:0.052:2	./.	./.	./.
chr8	62550936	rs998427	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:20,11:32:31:0.355:2	0/1:4,8:32:12:0.667:2	./.	0/1:7,11:31:18:0.611:2	./.	./.	./.	./.	./.	./.	./.
chr8	62555416	rs35579573	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:24,10:19:34:0.294:2	./.	./.	0/1:33,9:16:42:0.214:2	./.	0/1:48,14:19:62:0.226:2	0/1:33,12:18:45:0.267:2	./.	0/1:36,15:18:51:0.294:2	0/1:44,9:15:53:0.170:2	0/1:37,21:17:58:0.362:2
chr8	62555431	rs71967782	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,9:15:68:0.132:2	0/1:55,20:13:75:0.267:2	0/1:61,10:14:71:0.141:2
chr8	62595068	rs3750278	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,59:31:59:1.00:2	0/1:38,41:31:79:0.519:2	0/1:1,61:31:62:0.984:2	0/1:1,86:31:87:0.989:2	0/1:0,89:32:89:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,77:31:77:1.00:2
chr8	63161612	rs2272013	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:27:4:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.
chr8	63659610	rs1319275	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:44,37:32:81:0.457:2	0/1:35,19:31:54:0.352:2	./.	0/1:51,53:31:104:0.510:2	./.	0/1:0,121:31:121:1.00:2	0/1:5,124:31:129:0.961:2	0/1:81,43:31:124:0.347:2	0/1:0,98:32:98:1.00:2	0/1:1,77:32:78:0.987:2	0/1:3,105:32:108:0.972:2
chr8	63659635	rs4739003	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:31,42:32:73:0.575:2	0/1:16,34:32:50:0.680:2	./.	0/1:53,47:32:100:0.470:2	./.	./.	./.	0/1:41,73:32:115:0.640:2	./.	./.	./.
chr8	63902715	rs56081236	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:34,39:33:73:0.534:2	0/1:12,30:33:42:0.714:2	./.	./.	0/1:33,32:32:65:0.492:2	./.	./.	./.	./.	./.	./.
chr8	63938764	rs11545078	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,24:33:38:0.632:2	0/1:13,24:32:37:0.649:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	63942717	rs4617146	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,12:32:29:0.414:2	./.	./.	0/1:34,45:32:79:0.570:2	0/1:36,38:32:74:0.514:2	./.	0/1:38,44:32:82:0.537:2
chr8	63951237	rs11545077	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:10,12:31:22:0.545:2	./.	0/1:5,4:32:9:0.444:2	./.	./.	./.	./.	0/1:0,52:31:52:1.00:2	./.	./.	./.
chr8	63951312	rs1800909	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	./.	./.	0/1:8,3:31:11:0.273:2	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.
chr8	64100299	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:28:76:0.053:2
chr8	65493429	rs7016250	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,4:29:4:1.00:2	./.	0/1:7,4:29:11:0.364:2	./.	./.	./.	./.	./.	./.	./.
chr8	65495333	rs16931326	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,53:31:114:0.465:2	./.	./.	./.	./.
chr8	65496059	rs9650210	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,34:32:78:0.436:2	0/1:24,16:33:40:0.400:2	0/1:7,4:32:11:0.364:2	0/1:43,35:32:78:0.449:2	./.	./.	./.	./.	./.	./.	./.
chr8	65509268	rs115819669	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:32:46:0.087:2	./.
chr8	65527669	rs59035258	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,83:30:176:0.472:2	./.	./.	0/1:83,101:32:184:0.549:2	./.	./.	./.
chr8	66517486	rs3765205	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,23:31:63:0.365:2	0/1:20,8:31:28:0.286:2	0/1:0,49:30:49:1.00:2	0/1:32,14:30:46:0.304:2	0/1:0,43:31:43:1.00:2	0/1:30,20:31:50:0.400:2	0/1:0,33:31:34:1.00:2	0/1:25,24:30:49:0.490:2
chr8	66525548	rs11559265	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,7:32:17:0.412:2	./.	0/1:65,47:32:112:0.420:2	0/1:2,114:32:116:0.983:2	0/1:56,49:33:105:0.467:2	0/1:1,140:33:141:0.993:2	0/1:72,95:33:167:0.569:2	0/1:0,86:33:86:1.00:2	0/1:88,63:32:151:0.417:2
chr8	66620359	rs13274205	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,4:32:6:0.667:2	0/1:3,4:31:7:0.571:2	0/1:0,2:32:2:1.00:2	./.	0/1:6,8:30:14:0.571:2	./.	0/1:9,9:30:18:0.500:2	./.	0/1:12,8:29:20:0.400:2	./.	0/1:16,9:31:25:0.360:2
chr8	66692011	rs11557049	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,9:31:17:0.529:2	./.	./.	./.	./.	./.	./.
chr8	66992704	rs78575551	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,97:32:166:0.584:2	./.	./.	./.
chr8	66992737	rs7006209	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,68:30:121:0.562:2	./.	./.	./.	./.	./.	./.	0/1:58,39:30:97:0.402:2
chr8	67039605	rs11991549	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,56:32:123:0.455:2	./.
chr8	67062583	rs61738600	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,29:32:70:0.414:2	./.	./.	./.	./.	./.	./.	0/1:37,49:33:86:0.570:2
chr8	67064654	rs7843605	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,13:33:20:0.650:2	./.	./.	./.	./.	./.	0/1:7,6:33:13:0.462:2	./.
chr8	67066512	rs61745245	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,55:30:113:0.487:2	./.
chr8	67086761	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:31:72:0.056:2	./.	./.	./.	./.	./.
chr8	67341378	rs3739334	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,59:31:123:0.480:2	0/1:55,35:31:90:0.389:2
chr8	67341714	rs34077648	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,19:30:32:0.594:2	0/1:10,6:31:16:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	67341743	rs3739335	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,24:31:58:0.414:2	./.	./.	./.	./.	./.	./.
chr8	67341938	rs3739336	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,12:32:26:0.462:2	0/1:13,11:31:24:0.458:2	./.	./.	./.	0/1:17,15:31:32:0.469:2	./.	./.	./.	0/1:8,10:31:18:0.556:2	./.
chr8	67342077	rs3739337	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,4:30:10:0.400:2	0/1:6,18:31:24:0.750:2
chr8	67342165	rs144551617	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,17:29:36:0.472:2	./.	./.	./.
chr8	67342257	rs61747714	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,9:32:19:0.474:2	0/1:7,11:32:18:0.611:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	67357511	rs202039447	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:33:64:0.063:2	./.
chr8	67369355	rs2555588	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,6:31:12:0.500:2	0/1:33,24:30:57:0.421:2	./.	./.	./.	./.	0/1:28,25:31:53:0.472:2	./.	./.
chr8	67380528	rs1060242	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,29:32:66:0.439:2	0/1:10,20:30:30:0.667:2	0/1:4,9:30:13:0.692:2	0/1:35,50:31:85:0.588:2	0/1:28,24:30:53:0.462:2	./.	0/1:25,46:30:71:0.648:2	0/1:35,51:31:86:0.593:2	0/1:50,48:31:98:0.490:2	0/1:28,36:31:64:0.563:2	0/1:38,47:31:85:0.553:2
chr8	67485665	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,28:33:62:0.452:2	0/1:18,9:33:27:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	67504679	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	67547446	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:32:110:0.036:2	./.	./.	./.	./.
chr8	67576737	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,40:31:66:0.606:2
chr8	67592152	rs1057463	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,8:32:37:0.216:2	0/1:11,4:32:15:0.267:2	./.	0/1:3,3:32:6:0.500:2	0/1:8,3:32:11:0.273:2	0/1:7,7:34:14:0.500:2	./.	0/1:21,14:30:35:0.400:2
chr8	67748258	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,4:32:111:0.036:2	./.	./.	./.	./.	./.	./.	./.
chr8	67786633	rs79944926	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,7:32:24:0.292:2	./.	./.	./.	./.	./.	0/1:18,11:32:29:0.379:2	./.
chr8	67789706	rs116880118	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,37:33:80:0.463:2	./.	./.	0/1:48,36:33:84:0.429:2
chr8	67796120	rs17332410	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,21:31:48:0.438:2	./.	./.	./.	./.	./.
chr8	67999119	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,11:13:50:0.220:2	./.	./.	./.	./.	./.	./.	./.	0/1:44,15:13:59:0.254:2	./.	0/1:45,14:13:59:0.237:2
chr8	68030568	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:32:172:0.023:2
chr8	68087659	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:33:129:0.031:2	./.	./.
chr8	68115346	rs61753693	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,29:31:30:0.967:2	./.	./.	./.	0/1:82,74:32:156:0.474:2	./.	./.	./.	./.
chr8	68178398	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:32:110:0.036:2	./.
chr8	68396915	rs17343819	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,37:33:108:0.343:2	0/1:22,29:32:51:0.569:2	./.	./.	./.	./.	./.	./.	0/1:88,70:33:158:0.443:2	./.	./.
chr8	68421768	rs17853192	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,44:34:80:0.550:2	./.	0/1:60,46:32:106:0.434:2
chr8	68536470	rs10957393	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,24:32:46:0.522:2	0/1:25,36:32:61:0.590:2	./.	0/1:51,29:32:80:0.363:2
chr8	68864728	rs61753697	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,39:29:70:0.557:2	0/1:25,25:32:50:0.500:2	0/1:0,14:31:14:1.00:2	0/1:80,52:29:132:0.394:2	0/1:77,87:28:164:0.530:2	0/1:0,118:29:118:1.00:2	0/1:88,80:29:168:0.476:2	./.	0/1:36,36:30:73:0.500:2	./.	./.
chr8	68930127	rs139905707	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,31:33:68:0.456:2	0/1:19,12:33:31:0.387:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	68968166	rs1434774	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,4:32:28:0.143:2	0/1:37,17:32:54:0.315:2	0/1:21,13:33:34:0.382:2	./.	./.	0/1:0,52:33:52:1.00:2	./.
chr8	68968171	rs1434775	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,3:31:27:0.111:2	0/1:40,19:31:59:0.322:2	0/1:22,17:31:39:0.436:2	./.	./.	0/1:0,57:31:57:1.00:2	./.
chr8	68993013	rs12682458	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,121:32:122:0.992:2	0/1:0,64:32:64:1.00:2	0/1:7,6:33:13:0.462:2	0/1:0,102:32:102:1.00:2	0/1:0,49:32:49:1.00:2	0/1:3,135:32:138:0.978:2	0/1:42,33:32:75:0.440:2	0/1:72,62:32:134:0.463:2	./.	0/1:59,51:33:110:0.464:2	0/1:101,79:33:180:0.439:2
chr8	68993014	rs12680555	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,123:33:123:1.00:2	0/1:0,64:33:64:1.00:2	0/1:6,6:33:12:0.500:2	0/1:0,103:33:103:1.00:2	0/1:0,49:33:49:1.00:2	0/1:4,135:32:139:0.971:2	0/1:41,33:33:74:0.446:2	0/1:72,62:32:134:0.463:2	./.	0/1:59,52:33:111:0.468:2	0/1:102,79:33:181:0.436:2
chr8	69009268	rs3812458	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,39:31:92:0.424:2	./.	./.	./.	0/1:35,16:30:51:0.314:2	./.
chr8	69020496	rs4260880	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:31:8:1.00:2	./.	./.	0/1:75,42:29:117:0.359:2	./.	./.	./.	0/1:0,96:29:96:1.00:2	./.
chr8	69046409	rs3793379	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:38,26:33:64:0.406:2	0/1:17,17:33:34:0.500:2	./.	./.	0/1:38,18:31:56:0.321:2	./.	./.	0/1:35,35:32:70:0.500:2	./.	./.	./.
chr8	69058536	rs61753703	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,28:33:53:0.528:2	0/1:13,12:32:25:0.480:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	69104723	rs200083700	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,13:17:69:0.188:2	0/1:41,11:15:52:0.212:2	0/1:55,11:19:66:0.167:2	./.	./.	0/1:41,7:17:48:0.146:2
chr8	69136871	rs940664	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,16:31:39:0.410:2	0/1:24,10:31:34:0.294:2
chr8	69143589	rs2280637	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,14:30:27:0.519:2	0/1:15,17:30:32:0.531:2
chr8	69381053	rs61736081	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	69434195	rs2289831	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,17:31:43:0.395:2	0/1:19,14:32:33:0.424:2	./.	./.	./.	./.	./.	./.	0/1:2,37:32:39:0.949:2	./.	./.
chr8	69633621	rs145269861	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,59:28:142:0.415:2
chr8	69730432	rs16935106	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:45,21:31:66:0.318:2	0/1:24,8:31:32:0.250:2	./.	0/1:0,56:30:56:1.00:2	./.	0/1:0,41:30:41:1.00:2	./.	./.	./.	0/1:0,58:31:59:1.00:2	0/1:45,24:31:69:0.348:2
chr8	69730488	rs16935109	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:57,44:32:101:0.436:2	0/1:37,22:32:59:0.373:2	./.	0/1:0,102:32:102:1.00:2	./.	0/1:0,67:32:67:1.00:2	./.	./.	./.	0/1:0,80:32:80:1.00:2	0/1:60,56:32:116:0.483:2
chr8	70501317	rs77728226	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,32:32:64:0.508:2	0/1:15,15:31:30:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	70553087	rs72658296	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,68:32:163:0.417:2	./.	./.	./.	./.	./.	./.	./.
chr8	70588878	rs10448034	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,43:29:102:0.422:2	0/1:44,36:29:80:0.450:2	./.	./.	0/1:63,43:29:106:0.406:2	0/1:48,42:31:90:0.467:2	0/1:0,55:30:56:1.00:2	./.
chr8	70744812	rs3750266	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:8,6:33:14:0.429:2	./.	0/1:0,3:32:3:1.00:2	0/1:11,11:31:22:0.500:2	0/1:17,16:32:33:0.485:2	0/1:13,7:30:20:0.350:2	0/1:14,7:30:21:0.333:2	./.	0/1:4,6:33:10:0.600:2	0/1:12,9:33:21:0.429:2	0/1:0,13:32:13:1.00:2
chr8	70964399	rs10089937	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,73:29:74:0.986:2	0/1:0,45:29:45:1.00:2	0/1:0,6:30:6:1.00:2	0/1:45,54:29:99:0.545:2	./.	0/1:50,59:29:109:0.541:2	0/1:4,98:29:102:0.961:2	0/1:0,84:29:84:1.00:2	0/1:55,65:30:120:0.542:2	0/1:0,58:29:58:1.00:2	0/1:2,100:29:102:0.980:2
chr8	70967607	rs3750225	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,61:33:62:0.984:2	0/1:0,32:33:32:1.00:2	0/1:0,7:33:7:1.00:2	0/1:51,43:33:94:0.457:2	./.	0/1:52,50:32:102:0.490:2	0/1:1,81:33:82:0.988:2	0/1:0,74:32:74:1.00:2	0/1:49,53:34:102:0.520:2	0/1:0,64:33:64:1.00:2	0/1:0,82:33:82:1.00:2
chr8	70971040	rs118009321	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,24:32:42:0.571:2	0/1:18,10:33:28:0.357:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	70978690	rs3750227	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,104:33:106:0.981:2	./.	./.	./.	./.
chr8	70980738	rs3750228	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:33:6:1.00:2	./.	./.	./.	./.	./.	./.	0/1:16,27:32:43:0.628:2	./.
chr8	70980746	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:31:86:0.047:2
chr8	70981451	rs9969435	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,74:30:165:0.451:2	./.	./.	./.	./.	./.	./.	./.
chr8	70981501	rs200062567	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,93:32:189:0.492:2	./.	./.	./.	./.
chr8	71039118	rs2228591	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,65:33:141:0.461:2	./.
chr8	71041146	rs115177449	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,55:32:142:0.387:2	./.	./.	./.	./.
chr8	71050520	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,6:30:176:0.034:2	./.	./.	./.
chr8	71550144	rs35571096	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,9:32:13:0.692:2	0/1:45,31:33:76:0.408:2	./.	./.	./.	./.	./.	0/1:24,18:34:42:0.429:2	./.
chr8	71550832	rs7830986	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,28:34:56:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr8	71593425	rs6991329	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:117,72:32:190:0.381:2	0/1:65,62:32:127:0.488:2	./.	./.	./.	0/1:115,82:32:197:0.416:2	0/1:3,117:32:120:0.975:2	0/1:119,76:32:195:0.390:2	0/1:2,175:33:177:0.989:2	0/1:4,166:33:170:0.976:2	0/1:2,174:33:176:0.989:2
chr8	71646275	rs72667746	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,60:32:148:0.405:2	./.	./.
chr8	72111599	rs10103397	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,29:30:60:0.483:2	./.	./.	./.	./.	./.	0/1:21,21:26:42:0.500:2
chr8	72111658	rs117149407	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,24:30:50:0.480:2	./.	./.	./.	./.
chr8	72936145	rs959976	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,26:29:54:0.481:2	0/1:20,7:27:27:0.259:2	0/1:4,7:29:11:0.636:2	0/1:31,22:29:53:0.415:2	./.	./.	0/1:20,17:28:37:0.459:2	./.	./.	./.	./.
chr8	72942210	rs3824151	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:89,91:32:180:0.506:2	0/1:86,92:31:178:0.517:2	0/1:19,21:32:40:0.525:2	./.	0/1:6,182:31:188:0.968:2	0/1:4,179:31:183:0.978:2	0/1:98,67:32:165:0.406:2	./.	./.	0/1:2,171:31:173:0.988:2	0/1:2,173:32:175:0.989:2
chr8	72958799	rs61757563	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,26:31:55:0.473:2
chr8	72964848	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,4:31:80:0.050:2	./.	./.	./.	./.	./.	./.
chr8	72966002	rs3735943	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:37,20:32:57:0.351:2	0/1:27,13:32:40:0.325:2	0/1:7,7:32:14:0.500:2	./.	0/1:0,64:32:64:1.00:2	0/1:1,71:31:72:0.986:2	0/1:51,37:32:88:0.420:2	./.	./.	0/1:1,46:32:47:0.979:2	0/1:0,65:32:65:1.00:2
chr8	72967696	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:32:199:0.020:2	./.	./.
chr8	72975801	rs7819749	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,41:33:66:0.621:2	0/1:21,20:32:41:0.488:2	0/1:0,7:32:7:1.00:2	0/1:40,33:32:73:0.452:2	0/1:0,40:32:40:1.00:2	0/1:0,41:32:41:1.00:2	0/1:29,16:31:45:0.356:2	./.	./.	0/1:0,52:33:52:1.00:2	0/1:0,78:32:78:1.00:2
chr8	72977703	rs920829	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,17:31:32:0.531:2	0/1:93,83:31:176:0.472:2	./.	./.	./.	./.	./.	./.	./.
chr8	72981318	rs28546865	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,3:29:9:0.333:2	0/1:63,37:31:100:0.370:2	./.	./.	./.	./.	./.	./.	./.
chr8	72981327	rs1811457	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,36:32:68:0.529:2	0/1:22,13:31:35:0.371:2	0/1:0,9:32:9:1.00:2	0/1:63,35:33:98:0.357:2	0/1:0,46:32:46:1.00:2	0/1:0,97:32:97:1.00:2	0/1:44,32:31:76:0.421:2	0/1:121,4:34:125:0.032:2	./.	0/1:0,76:32:76:1.00:2	0/1:0,98:32:99:1.00:2
chr8	72984041	rs16937976	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:50,34:33:84:0.405:2	0/1:23,17:32:40:0.425:2	./.	./.	0/1:34,15:32:49:0.306:2	0/1:56,40:32:96:0.417:2	0/1:23,32:33:55:0.582:2	./.	./.	./.	./.
chr8	72987638	rs13268757	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,6:30:10:0.600:2	0/1:1,7:31:8:0.875:2	./.	./.	0/1:6,9:31:15:0.600:2	0/1:4,3:28:7:0.429:2	0/1:8,10:31:18:0.556:2	./.	./.	./.	./.
chr8	73480125	rs34259157	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,13:31:44:0.295:2	./.
chr8	73480344	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:31:123:0.033:2
chr8	73850203	rs11782118	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,65:30:65:1.00:2	0/1:0,45:31:45:1.00:2	0/1:8,6:28:14:0.429:2	./.	0/1:2,71:30:73:0.973:2	./.	0/1:0,64:30:64:1.00:2	0/1:33,43:30:76:0.566:2	0/1:0,90:32:90:1.00:2	0/1:33,23:30:56:0.411:2	0/1:29,40:31:69:0.580:2
chr8	73926163	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:167,12:29:179:0.067:2	./.	./.	0/1:131,6:29:137:0.044:2	0/1:192,7:29:199:0.035:2	./.	./.	./.
chr8	73926175	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,6:29:190:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr8	73926183	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,6:27:194:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr8	73982161	rs2291219	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,41:30:80:0.513:2	0/1:21,22:28:43:0.512:2	0/1:12,7:31:19:0.368:2	0/1:0,86:29:86:1.00:2	0/1:0,65:29:65:1.00:2	0/1:1,72:30:73:0.986:2	0/1:3,52:28:55:0.945:2	0/1:2,102:29:104:0.981:2	0/1:50,42:30:92:0.457:2	0/1:49,50:29:99:0.505:2	0/1:50,34:29:84:0.405:2
chr8	74005131	rs59331088	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,66:32:68:0.971:2	0/1:63,42:31:105:0.400:2	0/1:54,36:32:90:0.400:2	./.	0/1:72,31:32:103:0.301:2	0/1:19,39:33:58:0.672:2	0/1:0,22:32:22:1.00:2	./.
chr8	74527996	rs949493	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:31:62:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,74:30:74:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,69:31:69:1.00:2
chr8	74585466	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:31:63:0.063:2	./.	./.	./.
chr8	74706334	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,5:27:180:0.028:2	./.	./.	./.	./.	./.
chr8	74888616	rs8075	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:34:3:0.667:2	./.	./.	./.	./.	./.	./.	./.
chr8	74893419	rs61732273	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:31:14:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	74893653	rs77410280	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,54:31:104:0.519:2	./.	./.	./.	./.
chr8	74893821	rs1053079	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,14:32:29:0.500:2	0/1:8,7:33:15:0.467:2	0/1:4,3:34:7:0.429:2	0/1:19,14:33:33:0.424:2	0/1:10,4:33:14:0.286:2	./.	./.	0/1:6,12:33:18:0.667:2	./.	./.	./.
chr8	74893850	rs1053077	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,9:32:18:0.500:2	0/1:3,5:31:8:0.625:2	./.	0/1:10,9:33:19:0.474:2	0/1:8,4:32:12:0.333:2	./.	./.	0/1:4,7:33:11:0.636:2	./.	./.	./.
chr8	74917084	rs6472812	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,114:33:114:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,115:32:115:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,92:33:92:1.00:2	0/1:0,121:33:121:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,180:32:180:1.00:2
chr8	75262798	rs7828201	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:33:51:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,102:33:102:1.00:2	0/1:0,161:32:161:1.00:2	0/1:0,130:33:130:1.00:2	0/1:0,120:33:120:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,88:33:88:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,78:33:78:1.00:2
chr8	75274141	rs11554166	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,14:29:14:1.00:2	0/1:3,6:29:9:0.667:2	0/1:7,9:30:16:0.563:2	0/1:6,5:29:11:0.455:2	0/1:8,6:28:14:0.429:2	0/1:20,5:31:25:0.200:2	./.	./.
chr8	75617958	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:31:55:0.073:2	./.
chr8	75617959	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:33:55:0.073:2	./.
chr8	75761415	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2	./.	./.
chr8	75924760	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,31:33:64:0.484:2	./.	./.	./.	./.
chr8	76452313	rs2943549	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,15:32:32:0.469:2	0/1:15,5:31:20:0.250:2	0/1:0,3:32:3:1.00:2	0/1:22,21:31:43:0.488:2	0/1:0,26:31:26:1.00:2	./.	0/1:1,17:31:18:0.944:2	./.	0/1:19,24:32:43:0.558:2	0/1:0,21:32:21:1.00:2	0/1:23,25:31:48:0.521:2
chr8	76465360	rs1805099	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,27:32:27:1.00:2	./.	./.	./.	./.	./.	./.	0/1:70,68:33:138:0.493:2	./.
chr8	76468282	rs1805098	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,25:30:58:0.431:2	0/1:13,13:31:26:0.500:2	0/1:0,4:30:4:1.00:2	0/1:32,35:30:67:0.522:2	0/1:0,34:30:34:1.00:2	./.	0/1:0,47:31:47:1.00:2	./.	0/1:44,26:31:70:0.371:2	0/1:0,23:30:23:1.00:2	0/1:43,34:31:78:0.442:2
chr8	77616519	rs56261025	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,30:29:72:0.417:2	./.	./.	./.	./.	./.	./.
chr8	77616813	rs147642461	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:31:8:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	77618853	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:31:79:0.051:2	./.	./.	./.	./.	./.
chr8	77690563	rs16939357	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,66:32:108:0.611:2	0/1:58,52:31:110:0.473:2	./.	./.	0/1:63,54:32:117:0.462:2	./.	0/1:62,39:31:101:0.386:2	./.
chr8	77745635	rs2733733	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,6:32:15:0.400:2	0/1:0,139:31:139:1.00:2	0/1:0,108:31:108:1.00:2	0/1:81,82:31:163:0.503:2	0/1:82,55:31:137:0.401:2	./.	0/1:82,75:32:157:0.478:2	0/1:2,114:31:116:0.983:2	0/1:80,83:32:163:0.509:2
chr8	77754904	rs1825366	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,12:31:21:0.571:2	./.	0/1:26,18:31:44:0.409:2	./.	./.	0/1:34,15:33:49:0.306:2	0/1:26,11:32:37:0.297:2	./.
chr8	77765301	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:29:10:0.300:2	./.	./.	./.	./.	./.	0/1:6,3:27:10:0.333:2	./.
chr8	77765328	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:28,6:20:34:0.176:2	./.	./.	./.	0/1:44,10:15:54:0.185:2	./.	./.	0/1:30,5:21:35:0.143:2	./.	./.	./.
chr8	77765378	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,6:21:66:0.091:2	0/1:63,6:20:69:0.087:2
chr8	77765865	rs2728455	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,29:32:29:1.00:2	./.	0/1:11,12:32:23:0.522:2	0/1:15,15:31:30:0.500:2	./.	0/1:19,22:32:41:0.537:2	0/1:28,26:32:54:0.481:2
chr8	77767797	rs16939379	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,15:28:31:0.484:2	./.	0/1:14,20:30:34:0.588:2	./.	./.	0/1:12,16:32:28:0.571:2	0/1:12,10:31:22:0.455:2	0/1:18,12:31:30:0.400:2
chr8	77776652	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:33:49:0.082:2	./.	./.
chr8	77895865	rs10087163	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,17:30:17:1.00:2	0/1:0,11:26:11:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,15:29:16:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,24:30:24:1.00:2
chr8	77896300	rs61752118	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:31:118:0.034:2	./.	./.	./.	./.
chr8	79590873	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:32:110:0.036:2
chr8	79609647	rs35904168	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,9:32:15:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	79610710	rs1054283	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,23:33:55:0.418:2	0/1:23,19:33:42:0.452:2	0/1:0,6:32:6:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,36:33:36:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,47:33:47:1.00:2	0/1:46,20:33:66:0.303:2	./.	0/1:0,97:32:97:1.00:2
chr8	80962663	rs77756924	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,39:32:74:0.527:2	./.	./.	./.	./.	./.
chr8	81399567	rs593747	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,13:30:34:0.382:2	./.	./.	0/1:15,15:29:30:0.500:2	./.	./.	./.	./.
chr8	81426196	rs76767219	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:90,59:31:149:0.396:2	./.	./.	./.	./.	./.	./.
chr8	81582750	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:34:98:0.041:2
chr8	81733727	rs3907424	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:98,80:31:178:0.449:2	0/1:51,41:31:92:0.446:2	0/1:1,15:31:17:0.938:2	./.	./.	./.	0/1:98,76:31:174:0.437:2	./.	./.	0/1:100,91:31:191:0.476:2	./.
chr8	81733766	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,6:33:176:0.034:2	./.	./.
chr8	81897200	rs7006101	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,9:32:33:0.273:2	./.	./.	./.	./.	0/1:104,87:32:191:0.455:2	./.	./.	0/1:101,80:33:182:0.442:2
chr8	81897339	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,4:33:99:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr8	81905397	rs2016465	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:30:18:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,3:30:3:1.00:2	0/1:11,23:30:34:0.676:2	0/1:15,11:29:26:0.423:2	./.	./.	0/1:17,15:30:32:0.469:2	./.	./.	0/1:19,13:29:32:0.406:2
chr8	82195668	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,3:34:62:0.048:2	./.	./.	./.	./.
chr8	82355621	rs6473276	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,6:33:13:0.462:2	0/1:3,4:32:7:0.571:2	./.	./.	0/1:0,14:34:14:1.00:2	0/1:0,13:32:13:1.00:2	./.	0/1:5,17:32:22:0.773:2	0/1:10,21:33:31:0.677:2	0/1:7,8:34:15:0.533:2	./.
chr8	82357112	rs2229015	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,45:33:87:0.517:2	0/1:13,35:32:48:0.729:2	0/1:9,4:33:13:0.308:2	0/1:71,4:32:75:0.053:2	./.	0/1:1,67:33:68:0.985:2	./.	./.	0/1:46,54:34:100:0.540:2	./.	./.
chr8	82391093	rs1051252	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,10:30:14:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	82571665	rs146624224	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:32:62:0.065:2	./.	./.	./.
chr8	82592944	rs145492338	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:33:45:0.089:2	./.	./.
chr8	82592973	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:33:43:0.093:2	./.	./.
chr8	82606416	rs6995098	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,25:30:64:0.391:2
chr8	82606782	rs2955006	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,82:33:83:0.988:2	0/1:0,43:33:43:1.00:2	0/1:1,8:32:9:0.889:2	0/1:34,33:33:67:0.493:2	0/1:3,53:32:56:0.946:2	./.	0/1:0,65:32:65:1.00:2	0/1:38,34:32:72:0.472:2	0/1:34,50:33:84:0.595:2	0/1:0,71:32:71:1.00:2	0/1:64,56:33:120:0.467:2
chr8	82607068	rs78323957	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,74:32:170:0.435:2
chr8	82626211	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:32:199:0.020:2	./.
chr8	82627126	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:36:176:0.023:2	./.	./.
chr8	82633452	rs2130263	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,5:32:10:0.500:2	./.	./.	./.
chr8	82670412	rs62514262	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:45,33:33:78:0.423:2	0/1:16,12:32:28:0.429:2	./.	0/1:24,33:33:57:0.579:2	./.	./.	0/1:30,19:31:49:0.388:2	./.	./.	./.	./.
chr8	82727569	rs16909651	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:33:13:0.462:2	./.	0/1:38,16:30:54:0.296:2	./.	./.	0/1:51,33:32:84:0.393:2	./.	./.	./.
chr8	85833168	rs13267859	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:28:5:0.600:2	./.	0/1:7,9:29:16:0.563:2	0/1:0,27:31:27:1.00:2	0/1:17,13:30:30:0.433:2	./.	0/1:0,18:31:18:1.00:2	./.	0/1:0,15:30:16:1.00:2
chr8	86021994	rs62525422	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,44:30:86:0.512:2	./.	./.	./.
chr8	86025296	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,8:30:140:0.057:2	./.	./.	./.	./.	./.
chr8	86044026	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:31:59:0.068:2	./.	./.	./.
chr8	86057707	rs62525428	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,33:33:101:0.330:2	./.	./.	./.
chr8	86089787	rs12926	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:24:4:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr8	86171695	rs78066577	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,5:23:49:0.106:2	./.	./.	./.
chr8	86180136	rs34047437	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,28:29:115:0.243:2	./.	./.	./.	./.	./.	./.	./.
chr8	86180719	rs75353219	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,69:28:143:0.483:2	./.	./.	./.
chr8	86244732	rs61734485	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,54:30:100:0.540:2	./.	./.	./.	./.	./.
chr8	86351997	rs20571	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,40:32:40:1.00:2	0/1:0,18:31:18:1.00:2	./.	./.	0/1:0,25:32:25:1.00:2	./.	0/1:0,41:32:41:1.00:2	./.	0/1:16,20:32:36:0.556:2	0/1:0,35:32:35:1.00:2	0/1:0,25:32:25:1.00:2
chr8	86389403	rs703	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,144:33:144:1.00:2	0/1:2,81:32:83:0.976:2	0/1:10,14:32:24:0.583:2	./.	0/1:0,169:32:169:1.00:2	./.	0/1:0,167:33:167:1.00:2	./.	0/1:102,81:34:183:0.443:2	0/1:1,155:33:156:0.994:2	0/1:0,174:33:174:1.00:2
chr8	87076520	rs6998760	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,11:30:23:0.478:2	./.	0/1:11,8:28:19:0.421:2	0/1:12,9:32:21:0.429:2	./.	0/1:10,11:32:21:0.524:2	0/1:6,4:32:10:0.400:2	0/1:5,15:30:20:0.750:2
chr8	87155094	rs1483779	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,19:32:19:1.00:2	0/1:0,18:32:18:1.00:2	./.	0/1:0,24:33:24:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,23:31:23:1.00:2	0/1:6,7:32:13:0.538:2	0/1:14,13:32:27:0.481:2	0/1:0,25:33:25:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,21:33:21:1.00:2
chr8	87162515	rs10094744	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:33:77:0.052:2	./.	./.	./.
chr8	87163781	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:32:82:0.049:2	./.	./.	./.	./.
chr8	87226700	rs9656982	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,9:29:20:0.450:2	./.	./.	./.	./.
chr8	87229702	rs4546639	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,15:33:53:0.283:2	0/1:8,13:33:21:0.619:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,50:33:52:0.962:2
chr8	87229739	rs4419794	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,19:32:62:0.306:2	0/1:17,11:32:28:0.393:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,64:33:66:0.970:2
chr8	87229890	rs72688509	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,20:33:47:0.426:2	./.	./.
chr8	87229948	rs4621787	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:32:8:0.500:2	./.	./.	./.	0/1:21,23:30:44:0.523:2	0/1:24,19:32:43:0.442:2	./.	./.	./.
chr8	87235273	rs2976189	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,17:30:36:0.472:2	0/1:31,24:31:55:0.436:2	./.	0/1:24,20:32:44:0.455:2	0/1:31,14:32:45:0.311:2	./.	./.
chr8	87235283	rs55902108	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,32:32:78:0.410:2
chr8	87241847	rs7814198	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:36,26:31:62:0.419:2	0/1:17,13:32:30:0.433:2	./.	./.	./.	./.	0/1:15,23:32:38:0.605:2	0/1:23,22:32:45:0.489:2	./.	./.	0/1:24,38:32:62:0.613:2
chr8	87410675	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,33:31:94:0.351:2	./.	./.	./.	./.	./.
chr8	87410699	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:32:61:0.066:2	./.	./.	./.	./.	./.	./.	0/1:86,4:32:90:0.044:2	./.	./.
chr8	87410705	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:34:58:0.070:2	./.	./.	./.	./.	./.	./.	0/1:77,4:33:81:0.049:2	./.	./.
chr8	87410849	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,4:31:103:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr8	87414255	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:30:91:0.044:2	./.	./.	./.	./.	./.
chr8	87424062	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:35:90:0.044:2
chr8	87439926	rs60177164	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,38:32:81:0.469:2	./.	./.	./.	./.
chr8	87443862	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:32:71:0.056:2	./.	./.	./.
chr8	87460689	rs144060832	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,53:33:146:0.363:2	./.
chr8	87474085	rs7460650	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:38,56:32:94:0.596:2	0/1:22,36:32:58:0.621:2	0/1:5,8:32:13:0.615:2	./.	./.	./.	./.	./.	./.	0/1:49,36:32:85:0.424:2	0/1:51,48:32:99:0.485:2
chr8	87497176	rs11539113	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:57,34:32:91:0.374:2	0/1:35,33:32:68:0.485:2	0/1:5,6:31:11:0.545:2	./.	./.	./.	0/1:121,5:30:126:0.040:2	./.	./.	0/1:60,47:31:107:0.439:2	0/1:50,69:32:119:0.580:2
chr8	87519315	rs6980476	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,12:33:27:0.444:2	0/1:14,7:29:21:0.333:2	./.	./.	0/1:0,11:30:11:1.00:2	0/1:19,28:32:47:0.596:2	./.	0/1:4,21:32:25:0.840:2	0/1:0,28:32:28:1.00:2	0/1:23,9:33:32:0.281:2	./.
chr8	87540872	rs10956871	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:32,21:30:53:0.396:2	0/1:16,22:32:38:0.579:2	./.	./.	0/1:0,13:30:13:1.00:2	0/1:38,19:31:57:0.333:2	./.	0/1:0,50:31:50:1.00:2	0/1:3,47:31:50:0.940:2	0/1:34,31:32:65:0.477:2	./.
chr8	87567193	rs2304789	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:32:7:1.00:2	./.	./.	0/1:29,28:32:57:0.491:2	0/1:15,21:32:36:0.583:2	./.	0/1:31,33:32:64:0.516:2	./.	0/1:36,37:31:73:0.507:2
chr8	87568476	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:34:87:0.046:2	./.
chr8	87588198	rs3735972	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,40:32:124:0.323:2	./.	0/1:64,32:32:96:0.333:2	0/1:103,83:32:186:0.446:2	./.	./.	./.
chr8	87588248	rs3735970	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,29:32:89:0.326:2	./.	0/1:51,31:32:82:0.378:2	0/1:65,61:32:126:0.484:2	./.	./.	./.
chr8	87660100	rs13265557	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,43:32:92:0.467:2	./.	./.	./.	./.	./.	./.
chr8	87666251	rs4961206	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,35:33:77:0.455:2	0/1:25,24:32:49:0.490:2	0/1:10,6:32:16:0.375:2	0/1:3,88:32:92:0.967:2	0/1:34,38:32:72:0.528:2	./.	0/1:0,47:33:47:1.00:2	0/1:37,37:33:74:0.500:2	0/1:65,49:33:114:0.430:2	./.	0/1:0,101:33:101:1.00:2
chr8	87679303	rs6471482	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,109:32:109:1.00:2	0/1:0,72:32:72:1.00:2	0/1:3,15:33:18:0.833:2	0/1:0,127:32:127:1.00:2	0/1:0,128:32:128:1.00:2	0/1:100,62:32:162:0.383:2	0/1:1,131:32:132:0.992:2	0/1:91,68:32:159:0.428:2	0/1:0,147:33:147:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,161:32:161:1.00:2
chr8	87917339	rs199778499	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,22:33:55:0.400:2	./.
chr8	87917340	rs10504829	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,18:33:45:0.400:2	./.	./.	./.	./.
chr8	88363940	rs200357055	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,5:32:27:0.185:2	./.	./.
chr8	89053737	rs200558829	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:63,20:22:83:0.241:2	./.	./.	./.	0/1:64,10:24:74:0.135:2	./.	./.	0/1:77,8:20:86:0.094:2	0/1:87,14:24:101:0.139:2	0/1:58,14:21:72:0.194:2	0/1:57,20:25:78:0.260:2
chr8	89068420	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:30:111:0.036:2	./.	./.	./.	./.	./.
chr8	89068474	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:31:87:0.046:2	./.	./.	./.
chr8	89081730	rs2616490	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:29,45:33:74:0.608:2	0/1:35,23:32:58:0.397:2	0/1:6,7:32:13:0.538:2	./.	0/1:24,28:31:52:0.538:2	0/1:40,60:32:100:0.600:2	./.	0/1:64,32:32:96:0.333:2	0/1:37,38:33:75:0.507:2	0/1:0,84:33:84:1.00:2	0/1:50,58:32:108:0.537:2
chr8	90784979	rs2230801	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,17:33:26:0.654:2	0/1:60,82:32:142:0.577:2	./.	./.	./.	./.	./.	./.	0/1:54,43:32:97:0.443:2
chr8	90936842	rs377256782	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:29:94:0.043:2	./.	./.
chr8	90958422	rs1061302	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,21:30:40:0.525:2	0/1:21,13:30:34:0.382:2	./.	./.	./.	./.	0/1:23,23:30:46:0.500:2	0/1:29,31:29:60:0.517:2
chr8	90967711	rs709816	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:31:6:0.667:2	0/1:39,40:30:79:0.506:2	0/1:35,30:30:65:0.462:2	./.	./.	./.	./.	0/1:31,25:30:56:0.446:2	0/1:46,64:30:110:0.582:2
chr8	90990479	rs1805794	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,12:31:22:0.545:2	0/1:115,73:33:188:0.388:2	0/1:82,47:32:129:0.364:2	./.	./.	./.	./.	0/1:87,50:33:137:0.365:2	0/1:110,87:33:197:0.442:2
chr8	90995019	rs1063045	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,6:31:9:0.667:2	0/1:57,39:31:96:0.406:2	0/1:34,25:30:59:0.424:2	./.	./.	./.	./.	0/1:32,31:31:63:0.492:2	0/1:38,49:31:87:0.563:2
chr8	91064126	rs7162	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,8:27:25:0.320:2	./.	./.	./.	./.	./.	./.
chr8	91094899	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,4:32:192:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr8	91940446	rs1002583	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,10:32:27:0.370:2	./.	0/1:17,17:32:34:0.500:2	0/1:0,17:32:17:1.00:2	./.	0/1:7,20:33:27:0.741:2	./.	0/1:18,29:33:47:0.617:2
chr8	92021036	rs2054805	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:31:16:1.00:2	0/1:0,6:32:6:1.00:2	0/1:2,4:29:6:0.667:2	0/1:9,10:31:19:0.526:2	0/1:0,12:29:12:1.00:2	./.	./.	0/1:0,13:30:13:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,11:31:11:1.00:2	0/1:21,14:32:35:0.400:2
chr8	92033502	rs34503257	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,24:31:43:0.558:2	./.	./.
chr8	92083424	rs11557571	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,37:33:68:0.544:2	0/1:17,14:33:31:0.452:2	0/1:1,15:33:16:0.938:2	0/1:74,30:33:104:0.288:2	0/1:0,54:32:54:1.00:2	0/1:43,59:33:102:0.578:2	./.	0/1:1,69:33:70:0.986:2	0/1:39,27:33:66:0.409:2	0/1:52,52:32:104:0.500:2	0/1:69,54:33:123:0.439:2
chr8	92136728	rs11785003	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:8,5:31:13:0.385:2	0/1:3,7:31:10:0.700:2	0/1:0,3:31:3:1.00:2	0/1:10,3:30:13:0.231:2	0/1:0,18:30:18:1.00:2	0/1:8,5:30:13:0.385:2	./.	0/1:2,12:30:14:0.857:2	0/1:7,5:31:12:0.417:2	0/1:6,5:33:11:0.455:2	./.
chr8	92307921	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:32:152:0.026:2	./.	./.	./.
chr8	92346523	rs16912250	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:54,46:32:100:0.460:2	0/1:25,25:32:50:0.500:2	./.	0/1:61,30:33:91:0.330:2	./.	./.	./.	./.	./.	./.	0/1:87,62:32:149:0.416:2
chr8	92364100	rs10109254	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,36:32:68:0.529:2	./.	0/1:38,19:32:57:0.333:2	./.	./.	0/1:50,33:33:83:0.398:2	./.
chr8	92374629	rs145779342	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:121,71:30:192:0.370:2	./.	./.	./.	./.	./.	./.
chr8	92406021	rs16912805	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,28:32:73:0.384:2	./.	./.	./.	./.
chr8	92988184	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:33:46:0.087:2
chr8	93004030	rs143607818	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,70:31:160:0.438:2
chr8	94713646	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,5:27:176:0.028:2
chr8	94713647	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:32:177:0.023:2
chr8	94738629	rs36117362	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,23:32:64:0.359:2	./.	0/1:91,55:33:146:0.377:2	./.	0/1:92,47:33:139:0.338:2
chr8	94740486	rs200614366	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,6:32:195:0.031:2	./.	./.	./.
chr8	94746698	rs3133974	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,13:32:30:0.433:2	0/1:10,7:29:17:0.412:2	./.	./.	./.	0/1:19,15:32:34:0.441:2	./.	0/1:28,23:32:51:0.451:2	./.	0/1:0,28:33:28:1.00:2	0/1:17,24:32:41:0.585:2
chr8	94747882	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:33:108:0.037:2	./.	./.
chr8	94772165	rs73324992	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,27:32:52:0.519:2	./.	./.	./.	./.	./.
chr8	94781843	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:33:143:0.028:2	./.	./.	./.
chr8	94794620	rs3097427	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,46:32:49:0.939:2	0/1:0,35:32:35:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,65:30:65:1.00:2	./.	0/1:2,66:31:68:0.971:2	0/1:36,41:33:77:0.532:2	0/1:0,44:31:44:1.00:2	0/1:60,36:32:96:0.375:2
chr8	94805447	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:31:151:0.026:2
chr8	94808165	rs3134031	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,79:33:81:0.975:2	0/1:0,35:32:35:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,77:33:77:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,92:32:92:1.00:2	./.	0/1:1,95:32:96:0.990:2	0/1:57,58:33:115:0.504:2	0/1:0,99:33:99:1.00:2	0/1:75,64:33:139:0.460:2
chr8	94930098	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,84:32:163:0.515:2	./.	./.
chr8	94935937	rs4735258	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,9:32:28:0.321:2	0/1:4,6:32:10:0.600:2	0/1:0,4:32:4:1.00:2	0/1:10,5:30:15:0.333:2	./.	0/1:4,9:30:14:0.692:2	./.	0/1:0,12:32:12:1.00:2	0/1:6,17:33:23:0.739:2	0/1:0,12:30:12:1.00:2	./.
chr8	94936511	rs190420045	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,7:33:29:0.241:2	./.	./.	./.	./.
chr8	94936532	rs911	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,22:33:53:0.415:2	0/1:19,12:33:31:0.387:2	0/1:0,6:29:6:1.00:2	0/1:25,32:32:57:0.561:2	./.	./.	./.	0/1:0,41:32:41:1.00:2	0/1:24,19:34:43:0.442:2	0/1:1,42:33:43:0.977:2	./.
chr8	94938160	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,6:30:17:0.353:2	./.	./.	./.	./.	./.	./.
chr8	95143138	rs2513797	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,12:32:28:0.429:2	./.	./.	0/1:22,16:32:38:0.421:2	0/1:15,5:29:20:0.250:2	0/1:18,11:29:29:0.379:2
chr8	95143172	rs1051624	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:8,12:32:20:0.600:2	0/1:4,7:31:11:0.636:2	./.	0/1:20,9:30:29:0.310:2	./.	./.	0/1:1,39:30:40:0.975:2	0/1:26,22:30:48:0.458:2	./.	0/1:7,11:30:18:0.611:2	./.
chr8	95143186	rs1051623	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,8:32:17:0.471:2	0/1:4,5:31:9:0.556:2	./.	0/1:0,23:32:23:1.00:2	0/1:22,18:32:40:0.450:2	0/1:21,9:32:30:0.300:2	0/1:1,31:31:32:0.969:2	0/1:24,21:32:45:0.467:2	0/1:0,27:33:27:1.00:2	0/1:0,16:31:16:1.00:2	0/1:13,10:32:23:0.435:2
chr8	95158202	rs145864525	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:32:137:0.029:2	./.	./.
chr8	95158259	rs2251734	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,72:31:154:0.468:2	0/1:82,61:31:143:0.427:2	0/1:68,62:31:130:0.477:2	./.	./.	0/1:2,145:32:147:0.986:2	0/1:65,58:32:123:0.472:2	0/1:78,62:32:140:0.443:2
chr8	95158382	rs1131830	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,23:29:59:0.390:2	0/1:26,23:29:49:0.469:2	0/1:10,6:29:16:0.375:2	0/1:43,36:28:79:0.456:2	./.	./.	0/1:1,63:28:64:0.984:2	0/1:41,35:28:76:0.461:2	./.	0/1:31,34:28:65:0.523:2	./.
chr8	95161102	rs35792427	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,28:31:68:0.412:2	0/1:39,21:31:60:0.350:2	./.	./.	./.	0/1:64,31:33:95:0.326:2	./.	./.
chr8	95183118	rs147111302	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:32:13:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	95186382	rs3214050	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:31:69:1.00:2	0/1:0,33:31:33:1.00:2	0/1:11,4:30:15:0.267:2	0/1:52,40:31:94:0.435:2	0/1:1,53:30:54:0.981:2	0/1:57,36:30:93:0.387:2	0/1:44,23:29:67:0.343:2	0/1:75,44:30:119:0.370:2	./.	./.	./.
chr8	95188850	rs2243518	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,169:32:170:0.994:2	0/1:1,128:32:129:0.992:2	0/1:0,45:32:45:1.00:2	0/1:0,189:32:189:1.00:2	0/1:1,155:31:156:0.994:2	0/1:0,177:31:177:1.00:2	0/1:95,94:31:189:0.497:2	0/1:115,76:32:191:0.398:2	0/1:3,182:33:185:0.984:2	./.	0/1:95,82:32:177:0.463:2
chr8	95201415	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,3:33:54:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	95419698	rs2291439	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,23:32:25:0.920:2	./.	0/1:68,43:32:111:0.387:2	0/1:76,58:32:134:0.433:2	0/1:71,68:33:139:0.489:2	./.	./.	0/1:83,62:31:145:0.428:2	0/1:87,109:33:196:0.556:2
chr8	95531419	rs1866844	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:57,47:33:104:0.452:2	0/1:26,28:32:54:0.519:2	./.	0/1:42,41:32:83:0.494:2	0/1:54,69:32:123:0.561:2	./.	0/1:79,52:32:131:0.397:2	./.	./.	./.	./.
chr8	95538468	rs2890827	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:56,57:31:113:0.504:2	0/1:44,30:30:74:0.405:2	./.	0/1:61,45:30:106:0.425:2	0/1:46,35:30:81:0.432:2	./.	0/1:39,51:29:90:0.567:2	./.	./.	./.	./.
chr8	95541302	rs957448	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:28:7:1.00:2	./.	0/1:50,35:27:85:0.412:2	0/1:55,33:28:90:0.375:2	0/1:55,36:28:91:0.396:2	0/1:62,38:26:101:0.380:2	./.	0/1:42,32:27:76:0.432:2	0/1:50,35:29:85:0.412:2
chr8	95541371	rs957446	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,76:31:135:0.563:2	0/1:60,33:31:93:0.355:2	0/1:0,17:28:17:1.00:2	0/1:81,77:29:158:0.487:2	0/1:0,195:29:195:1.00:2	0/1:101,72:29:173:0.416:2	0/1:0,191:30:191:1.00:2	0/1:121,72:30:193:0.373:2	./.	0/1:88,90:30:178:0.506:2	0/1:82,74:30:156:0.474:2
chr8	95541459	rs76706433	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,59:32:136:0.434:2	./.	./.	./.
chr8	95547119	rs2304764	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	0/1:37,11:32:48:0.229:2	0/1:32,10:33:42:0.238:2	0/1:41,9:33:50:0.180:2	0/1:54,16:26:70:0.229:2	./.	0/1:20,8:32:28:0.286:2	0/1:23,12:30:35:0.343:2
chr8	95655596	rs72676907	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,133:28:135:0.985:2
chr8	95680229	rs1549466	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	0/1:42,41:31:83:0.494:2	0/1:31,20:32:51:0.392:2	./.	./.	0/1:0,74:32:74:1.00:2	0/1:1,91:31:92:0.989:2
chr8	95690579	rs12677519	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,20:32:41:0.488:2	0/1:13,9:32:22:0.409:2	0/1:4,3:34:7:0.429:2	0/1:0,62:33:62:1.00:2	./.	0/1:0,52:32:52:1.00:2	0/1:0,47:32:47:1.00:2	./.	0/1:0,40:33:40:1.00:2	0/1:0,39:33:39:1.00:2	0/1:2,54:33:56:0.964:2
chr8	95732283	rs13267007	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:31:45:1.00:2	0/1:0,31:31:31:1.00:2	0/1:6,7:33:13:0.538:2	0/1:5,78:31:83:0.940:2	0/1:0,62:30:62:1.00:2	./.	0/1:27,31:32:58:0.534:2	0/1:0,107:32:107:1.00:2	0/1:1,88:32:89:0.989:2	./.	./.
chr8	95871777	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.
chr8	95871785	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,5:28:120:0.042:2	./.	./.
chr8	95877787	rs713113	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,99:33:161:0.615:2	0/1:40,47:33:87:0.540:2	0/1:14,10:33:24:0.417:2	0/1:2,179:33:181:0.989:2	0/1:67,63:33:130:0.485:2	0/1:67,73:33:140:0.521:2	0/1:90,51:33:141:0.362:2	0/1:97,87:32:184:0.473:2	0/1:93,91:33:184:0.495:2	0/1:75,67:33:143:0.472:2	0/1:0,179:32:180:1.00:2
chr8	95877885	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,12:32:138:0.087:2	./.
chr8	95888307	rs1129152	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,27:32:74:0.365:2	0/1:20,15:32:35:0.429:2	0/1:3,3:31:6:0.500:2	0/1:2,71:31:73:0.973:2	0/1:21,24:31:45:0.533:2	0/1:45,39:30:84:0.464:2	0/1:22,14:31:36:0.389:2	./.	0/1:65,32:32:97:0.330:2	0/1:61,26:31:87:0.299:2	0/1:0,80:32:80:1.00:2
chr8	96064423	rs61743028	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,37:31:79:0.468:2	./.
chr8	96167316	rs77880997	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,9:32:18:0.500:2	./.	./.	./.
chr8	96167968	rs3174076	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,8:31:31:0.267:2	./.	./.	./.	./.
chr8	96168740	rs10099012	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,16:31:32:0.500:2	./.	./.	./.
chr8	96264436	rs35141355	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,99:33:200:0.495:2	./.	./.
chr8	96281363	rs36096184	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,40:32:78:0.513:2	./.	./.
chr8	97157658	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	./.	./.
chr8	97605800	rs1126681	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,57:32:58:0.983:2	0/1:47,39:32:86:0.453:2	0/1:22,30:33:52:0.577:2	./.	0/1:0,57:32:57:1.00:2
chr8	97614625	rs3816208	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,46:31:89:0.517:2	./.	./.	./.	./.	./.	./.	./.
chr8	97614661	rs1042381	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:31:13:0.385:2	./.	./.	./.	./.	0/1:82,45:31:127:0.354:2	./.	0/1:2,89:31:91:0.978:2	./.
chr8	97847253	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:160,4:34:164:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr8	97847358	rs1864384	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,83:31:83:1.00:2	0/1:0,40:32:40:1.00:2	./.	0/1:39,49:31:88:0.557:2	0/1:39,40:30:79:0.506:2	0/1:0,90:30:90:1.00:2	./.	0/1:0,100:31:100:1.00:2	./.	0/1:1,84:31:85:0.988:2	./.
chr8	97892059	rs61741750	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,63:31:117:0.538:2	./.	./.	./.	./.	./.	./.
chr8	98155391	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,4:31:112:0.036:2	./.	./.	./.	./.	./.	./.
chr8	98289329	rs34070970	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,5:31:8:0.625:2	./.	./.	0/1:8,3:31:11:0.273:2	./.
chr8	98289714	rs2635164	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,16:32:39:0.410:2	./.	./.	0/1:24,26:33:50:0.520:2	0/1:21,17:32:38:0.447:2
chr8	98289986	rs28669903	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,3:33:3:1.00:2	0/1:0,6:31:6:1.00:2	./.	./.	./.	./.	0/1:4,5:33:9:0.556:2	0/1:0,4:32:4:1.00:2	0/1:4,5:33:9:0.556:2	0/1:0,4:32:4:1.00:2	./.
chr8	98290104	rs148590867	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	0/1:0,3:30:3:1.00:2
chr8	98673310	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,4:32:73:0.055:2	./.	./.	./.	./.	./.	./.	./.
chr8	98703317	rs17854374	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:22,20:33:42:0.476:2	0/1:15,13:33:28:0.464:2	./.	0/1:21,24:32:45:0.533:2	./.	./.	./.	./.	./.	./.	./.
chr8	98788261	rs2449508	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:26,22:32:48:0.458:2	0/1:18,16:31:34:0.471:2	./.	./.	./.	./.	0/1:9,6:32:15:0.400:2	./.
chr8	98827636	rs7818662	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,56:34:107:0.523:2	0/1:48,32:32:80:0.400:2	0/1:13,16:32:29:0.552:2	0/1:0,117:32:117:1.00:2	./.	0/1:90,52:33:142:0.366:2	0/1:95,58:33:153:0.379:2	0/1:97,91:33:188:0.484:2	0/1:94,89:34:183:0.486:2	0/1:78,56:33:134:0.418:2	0/1:87,62:34:150:0.416:2
chr8	98863643	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:30:125:0.032:2	./.	./.	./.	./.	./.
chr8	98943446	rs2290470	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,58:28:58:1.00:2	0/1:38,23:28:61:0.377:2	./.	0/1:22,27:29:49:0.551:2	0/1:26,25:28:51:0.490:2	0/1:20,25:29:45:0.556:2	0/1:18,16:29:34:0.471:2	./.
chr8	98943545	rs2290471	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,33:31:33:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,4:30:4:1.00:2	./.	./.	0/1:21,13:29:34:0.382:2	./.	0/1:17,28:30:45:0.622:2	0/1:18,10:30:28:0.357:2	0/1:10,7:29:17:0.412:2	0/1:23,14:29:37:0.378:2
chr8	98943598	rs2290472	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	0/1:16,14:31:30:0.467:2	./.	./.	0/1:15,14:33:29:0.483:2	0/1:5,7:31:12:0.583:2	0/1:20,9:32:29:0.310:2
chr8	98954012	rs2513845	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,171:32:171:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,193:32:193:1.00:2	0/1:0,194:32:194:1.00:2	0/1:0,195:32:195:1.00:2	0/1:0,182:32:182:1.00:2	0/1:0,183:32:183:1.00:2	0/1:0,191:33:191:1.00:2	0/1:0,147:32:147:1.00:2	0/1:0,154:32:154:1.00:2
chr8	98991221	rs1869609	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,84:32:86:0.977:2	0/1:0,85:32:85:1.00:2	0/1:4,93:33:97:0.959:2	0/1:1,92:32:93:0.989:2	0/1:1,87:33:88:0.989:2	./.	0/1:0,101:33:101:1.00:2
chr8	99006736	rs11559202	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,49:32:91:0.538:2	./.	./.	./.	./.
chr8	99006748	rs11559201	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,47:31:90:0.528:2	./.	./.	./.	./.
chr8	99019333	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:31:108:0.037:2	./.	./.	./.	./.	./.
chr8	99030280	rs2248014	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,164:29:164:1.00:2	0/1:1,127:29:128:0.992:2	0/1:4,109:29:113:0.965:2	0/1:94,57:29:151:0.377:2	0/1:55,53:31:108:0.491:2	./.	0/1:0,84:28:84:1.00:2
chr8	99030320	rs35120814	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,43:31:101:0.426:2	./.	./.
chr8	99039774	rs2290466	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,11:30:23:0.478:2	0/1:22,9:33:31:0.290:2	./.	./.
chr8	99044528	rs2255317	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,30:32:68:0.441:2	0/1:31,36:32:67:0.537:2	./.	./.
chr8	99045866	rs17831160	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,27:31:50:0.551:2	./.	./.	./.	./.	./.	0/1:32,21:32:53:0.396:2	./.
chr8	99101976	rs35368005	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,4:31:12:0.333:2	./.	./.	./.	./.	./.	./.
chr8	99115082	rs11537947	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,23:33:51:0.451:2	./.	./.	0/1:34,31:33:65:0.477:2	./.	./.	./.
chr8	99115144	rs2447497	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,10:32:36:0.278:2	./.	./.
chr8	99135648	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,19:32:59:0.322:2	./.
chr8	99153088	rs17184326	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,10:27:10:1.00:2	0/1:8,4:28:12:0.333:2	./.	0/1:4,12:29:16:0.750:2	./.	./.	./.
chr8	99168383	rs16896695	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:23,25:32:48:0.521:2	0/1:19,14:32:33:0.424:2	./.	0/1:39,36:32:75:0.480:2	./.	./.	./.	./.	./.	./.	./.
chr8	99205612	rs3735887	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,71:31:71:1.00:2	0/1:2,60:32:62:0.968:2	./.	0/1:65,59:31:124:0.476:2	./.	0/1:87,55:31:142:0.387:2	0/1:0,102:31:102:1.00:2	0/1:76,77:31:153:0.503:2	0/1:66,60:31:126:0.476:2	0/1:0,91:31:91:1.00:2	0/1:78,72:32:150:0.480:2
chr8	99208190	rs3779721	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,56:30:57:0.982:2	0/1:1,58:29:59:0.983:2	./.	./.	./.	0/1:33,49:30:82:0.598:2	./.	./.	0/1:57,54:30:111:0.486:2	0/1:37,46:30:83:0.554:2	0/1:62,49:30:111:0.441:2
chr8	99208244	rs7010905	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:32:14:0.429:2	./.	./.	./.	./.	./.	./.	./.	0/1:45,53:32:98:0.541:2
chr8	99441431	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:30:56:0.071:2	./.	./.	./.	./.
chr8	99441904	rs3802197	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,96:32:187:0.513:2	0/1:51,55:32:106:0.519:2	0/1:0,24:31:24:1.00:2	0/1:118,80:31:198:0.404:2	0/1:2,190:31:192:0.990:2	0/1:113,79:31:192:0.411:2	0/1:3,186:32:189:0.984:2	0/1:127,66:31:193:0.342:2	0/1:0,193:33:193:1.00:2	0/1:125,74:31:199:0.372:2	0/1:0,190:31:190:1.00:2
chr8	99442642	rs79809243	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,89:31:191:0.466:2	./.	./.	./.	./.	./.
chr8	99443815	rs16896992	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,36:29:80:0.450:2	./.	0/1:41,35:29:76:0.461:2	./.	./.	0/1:32,37:30:69:0.536:2	./.	./.
chr8	99444366	rs201449239	C	T,A	.	PASS	AC=1,2;AF=0.111,0.222;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:BQ:DP:FA:SS	./.	./.	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0/2:32:21:0.143:2	./.	./.	./.	0/2:32:15:0.533:2	./.	0/1:33:17:0.400:2	./.
chr8	99468119	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:30:143:0.028:2	./.	./.	./.
chr8	100133706	rs7460625	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,52:32:103:0.505:2	0/1:14,20:32:34:0.588:2	0/1:1,4:32:5:0.800:2	0/1:0,84:33:84:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,62:32:62:1.00:2	0/1:20,12:30:32:0.375:2	0/1:52,36:32:88:0.409:2	0/1:0,92:34:92:1.00:2	0/1:41,33:33:74:0.446:2	0/1:1,95:33:96:0.990:2
chr8	100155318	rs140601319	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,14:31:28:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	100205255	rs61753721	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,35:31:73:0.479:2	./.	./.	./.	./.	./.	./.	./.
chr8	100403784	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,4:31:68:0.059:2	./.	./.	./.	./.	./.	./.
chr8	100443885	rs61753722	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,9:31:19:0.474:2
chr8	100493971	rs142674934	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,28:33:56:0.500:2	./.	./.	./.	./.	./.	./.
chr8	100654109	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2	./.	./.	./.	./.	./.
chr8	100791192	rs145208175	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,57:32:123:0.463:2	./.	./.	./.	./.	./.	./.
chr8	100844758	rs36074608	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:33,25:33:58:0.431:2	0/1:20,10:33:30:0.333:2	0/1:3,5:33:8:0.625:2	./.	./.	0/1:1,48:32:49:0.980:2	0/1:43,17:33:60:0.283:2	0/1:32,34:32:66:0.515:2	./.	0/1:0,50:32:50:1.00:2	./.
chr8	100865836	rs6468694	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,35:30:92:0.380:2	./.	./.	./.	./.	./.	./.
chr8	100887876	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:31:93:0.043:2
chr8	100899793	rs1130569	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,11:31:31:0.355:2	./.	./.	./.	./.	./.	./.
chr8	100975002	rs6468700	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:31:25:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,36:30:36:1.00:2
chr8	100990177	rs7841915	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,75:33:172:0.436:2	./.	./.
chr8	101153024	rs1460934	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:23,19:32:43:0.452:2	0/1:23,13:32:36:0.361:2	0/1:0,5:32:5:1.00:2	./.	0/1:37,24:32:61:0.393:2	0/1:0,65:30:65:1.00:2	0/1:38,15:32:53:0.283:2	0/1:0,59:32:59:1.00:2	0/1:55,41:32:96:0.427:2	0/1:0,52:32:52:1.00:2	0/1:55,50:31:106:0.476:2
chr8	101196892	rs181068659	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,16:32:42:0.390:2	./.	./.	./.	./.	./.	./.
chr8	101196938	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:32:73:0.055:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	101206391	rs17335870	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,77:31:154:0.500:2	0/1:44,33:31:77:0.429:2	./.	./.	0/1:66,56:30:122:0.459:2	0/1:51,66:32:117:0.564:2	0/1:0,84:31:84:1.00:2	0/1:77,58:32:136:0.430:2
chr8	101225559	rs2514681	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	0/1:0,12:30:12:1.00:2	./.	0/1:4,5:27:9:0.556:2	./.	./.	./.
chr8	101252680	rs6511	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:8,11:30:19:0.579:2	0/1:8,12:30:20:0.600:2	0/1:0,4:29:4:1.00:2	0/1:19,23:29:42:0.548:2	./.	0/1:0,37:29:37:1.00:2	0/1:21,19:29:40:0.475:2	0/1:0,36:30:36:1.00:2	0/1:16,27:30:43:0.628:2	0/1:0,20:30:20:1.00:2	./.
chr8	101253184	rs1788190	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:35,30:32:65:0.462:2	0/1:25,25:32:50:0.500:2	0/1:0,6:33:6:1.00:2	./.	./.	0/1:0,59:32:59:1.00:2	0/1:41,9:33:50:0.180:2	0/1:71,39:33:110:0.355:2	./.	./.	./.
chr8	101540153	rs11555216	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,62:34:141:0.440:2	./.	./.
chr8	101586133	rs2022923	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:37,36:32:74:0.493:2	0/1:28,22:31:50:0.440:2	./.	0/1:52,29:32:81:0.358:2	./.	0/1:1,79:32:80:0.988:2	./.	0/1:40,40:32:80:0.500:2	0/1:0,87:33:87:1.00:2	0/1:41,53:31:94:0.564:2	0/1:52,61:32:113:0.540:2
chr8	101608919	rs2248609	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:40,42:30:82:0.512:2	0/1:17,17:28:34:0.500:2	./.	0/1:46,45:30:91:0.495:2	./.	0/1:1,84:29:85:0.988:2	./.	0/1:64,48:30:112:0.429:2	0/1:53,48:31:101:0.475:2	0/1:42,37:30:79:0.468:2	0/1:34,42:30:76:0.553:2
chr8	101648164	rs2187016	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:23,39:33:63:0.629:2	0/1:29,22:32:51:0.431:2	./.	./.	0/1:3,54:32:57:0.947:2	./.	./.	0/1:59,57:33:116:0.491:2	./.	./.	0/1:73,53:32:126:0.421:2
chr8	101717832	rs75035099	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:34:199:0.020:2	./.	./.	./.
chr8	101718932	rs62513920	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:128,15:30:143:0.105:2	0/1:70,9:31:79:0.114:2	./.	0/1:132,28:32:162:0.175:2	0/1:161,12:32:174:0.069:2	0/1:153,12:32:165:0.073:2	0/1:161,10:31:171:0.058:2	0/1:140,26:32:166:0.157:2	0/1:175,9:33:184:0.049:2	0/1:165,7:32:172:0.041:2	0/1:171,8:32:180:0.045:2
chr8	101718965	rs62513921	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:105,6:32:111:0.054:2	./.	./.	0/1:100,20:33:120:0.167:2	./.	0/1:117,6:28:124:0.049:2	./.	0/1:85,12:32:97:0.124:2	0/1:140,4:32:144:0.028:2	./.	./.
chr8	101718968	rs62513922	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:102,6:31:108:0.056:2	./.	./.	0/1:97,19:32:116:0.164:2	./.	0/1:115,6:28:121:0.050:2	./.	0/1:82,12:32:94:0.128:2	0/1:131,4:31:135:0.030:2	./.	./.
chr8	101719121	rs79986761	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:49,4:32:53:0.075:2	0/1:21,4:32:25:0.160:2	./.	0/1:24,7:31:31:0.226:2	./.	0/1:59,7:31:67:0.106:2	./.	0/1:51,3:33:54:0.056:2	./.	./.	./.
chr8	101719138	rs79940439	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:56,7:32:63:0.111:2	0/1:22,7:32:29:0.241:2	./.	0/1:29,9:32:38:0.237:2	./.	0/1:56,7:30:63:0.111:2	0/1:41,4:32:45:0.089:2	./.	0/1:60,5:32:65:0.077:2	./.	./.
chr8	101719201	rs72681439	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:47,6:33:53:0.113:2	0/1:25,3:31:28:0.107:2	./.	0/1:44,6:31:50:0.120:2	./.	0/1:42,7:32:49:0.143:2	0/1:41,5:32:46:0.109:2	0/1:45,3:32:48:0.063:2	./.	./.	./.
chr8	101721408	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:27:52:0.077:2	./.	./.	./.
chr8	101721441	rs141624233	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:31:45:0.089:2	./.	./.	./.
chr8	101721709	rs146200489	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:124,7:32:131:0.053:2	./.	./.	./.	./.	0/1:129,4:31:133:0.030:2	./.	0/1:151,4:31:155:0.026:2	./.	0/1:133,4:30:137:0.029:2	./.
chr8	101721727	rs139094790	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:145,18:30:164:0.110:2	0/1:77,9:29:86:0.105:2	./.	0/1:141,17:29:158:0.108:2	0/1:164,12:29:176:0.068:2	0/1:145,14:30:159:0.088:2	0/1:165,8:28:173:0.046:2	0/1:146,9:30:155:0.058:2	0/1:168,5:30:173:0.029:2	0/1:157,14:28:171:0.082:2	0/1:167,7:32:174:0.040:2
chr8	101721756	rs57799615	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:121,26:30:147:0.177:2	0/1:81,19:32:100:0.190:2	0/1:37,4:32:41:0.098:2	0/1:120,17:31:137:0.124:2	0/1:154,17:30:171:0.099:2	0/1:144,20:31:164:0.122:2	0/1:151,11:29:162:0.068:2	0/1:130,17:30:147:0.116:2	0/1:152,9:31:161:0.056:2	0/1:144,20:33:164:0.122:2	0/1:140,12:32:152:0.079:2
chr8	101721812	rs200409148	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:113,12:29:125:0.096:2	0/1:89,18:31:108:0.168:2	0/1:24,7:31:31:0.226:2	0/1:117,15:30:132:0.114:2	0/1:115,14:30:129:0.109:2	0/1:128,20:31:149:0.135:2	0/1:123,18:31:141:0.128:2	0/1:126,29:30:156:0.187:2	0/1:131,10:29:141:0.071:2	0/1:144,19:31:163:0.117:2	0/1:155,9:29:164:0.055:2
chr8	101721817	rs201076736	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:110,13:32:123:0.106:2	0/1:89,16:31:105:0.152:2	0/1:26,7:32:33:0.212:2	0/1:124,14:32:138:0.101:2	0/1:113,10:31:124:0.081:2	0/1:121,19:31:140:0.136:2	0/1:127,15:32:142:0.106:2	0/1:129,28:32:157:0.178:2	0/1:135,8:31:143:0.056:2	0/1:141,15:32:156:0.096:2	0/1:156,7:33:163:0.043:2
chr8	101721839	rs202074479	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:133,24:29:157:0.153:2	0/1:83,15:33:98:0.153:2	0/1:20,3:31:23:0.130:2	0/1:134,20:30:154:0.130:2	0/1:120,8:31:128:0.063:2	0/1:128,24:31:152:0.158:2	0/1:137,19:31:156:0.122:2	0/1:135,30:32:165:0.182:2	0/1:151,8:32:159:0.050:2	0/1:145,19:31:164:0.116:2	0/1:170,11:30:181:0.061:2
chr8	101721870	rs146609644	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:131,26:32:157:0.166:2	0/1:83,23:32:106:0.217:2	0/1:19,3:29:22:0.136:2	0/1:145,21:31:166:0.127:2	0/1:105,6:32:111:0.054:2	0/1:138,21:31:159:0.132:2	0/1:126,14:32:140:0.100:2	0/1:136,23:32:159:0.145:2	0/1:141,5:32:146:0.034:2	0/1:159,15:32:174:0.086:2	0/1:163,12:31:176:0.069:2
chr8	101721899	rs142985461	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:127,28:31:155:0.181:2	0/1:75,24:31:99:0.242:2	0/1:14,3:29:17:0.176:2	0/1:132,21:30:153:0.137:2	0/1:88,6:30:94:0.064:2	0/1:125,21:30:146:0.144:2	0/1:98,12:30:110:0.109:2	0/1:106,25:31:131:0.191:2	0/1:117,5:31:122:0.041:2	0/1:128,15:29:144:0.105:2	0/1:151,13:31:165:0.079:2
chr8	101724606	rs202060459	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,9:30:136:0.066:2	0/1:149,4:31:153:0.026:2	./.	0/1:148,4:31:152:0.026:2	./.
chr8	101725000	rs62513925	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,7:30:60:0.117:2	./.	./.	./.	./.	./.	./.	./.
chr8	101725003	rs62513926	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,7:29:54:0.130:2	./.	./.	./.	./.	./.	./.	./.
chr8	101725018	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,5:31:41:0.122:2	./.	./.	./.	./.	./.	./.	./.
chr8	101730043	rs113614781	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:121,4:31:125:0.032:2	./.	./.	./.	./.	./.	0/1:175,5:32:180:0.028:2	./.	./.	0/1:183,5:33:188:0.027:2
chr8	101730064	rs72681442	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:157,4:31:161:0.025:2	0/1:122,7:32:129:0.054:2	./.	./.	./.	./.	./.	0/1:163,5:32:168:0.030:2	./.	0/1:162,8:30:170:0.047:2	0/1:174,4:32:178:0.022:2
chr8	101730073	rs72681443	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,7:31:124:0.056:2	./.	./.	./.	./.	./.	./.	./.	0/1:162,8:29:171:0.047:2	./.
chr8	101730110	rs76261471	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:30:101:0.040:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:31:104:0.038:2	./.
chr8	101730497	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:31:100:0.040:2	./.	0/1:102,5:32:107:0.047:2	./.	./.
chr8	101730502	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:32:95:0.042:2	./.	0/1:89,5:33:94:0.053:2	./.	./.
chr8	101733670	rs199921384	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,16:10:66:0.246:2	./.	./.	0/1:70,22:10:92:0.239:2	0/1:99,29:9:128:0.227:2	0/1:74,24:12:98:0.245:2	./.	0/1:86,43:8:129:0.333:2	0/1:97,30:7:127:0.236:2	./.	0/1:43,14:11:57:0.246:2
chr8	101936200	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:33:186:0.022:2	./.	./.	./.
chr8	101965087	rs10098502	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:14,16:30:30:0.533:2	0/1:12,6:32:18:0.333:2	./.	0/1:46,32:30:78:0.410:2	./.	./.	./.	./.	./.	./.	./.
chr8	102212265	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:32:47:0.085:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	102213928	.	A	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,12:13:83:0.145:2	./.	./.	0/1:86,13:13:99:0.131:2	./.	./.	0/1:113,13:14:126:0.103:2
chr8	102213947	.	A	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,17:12:73:0.233:2	0/1:48,14:10:62:0.226:2	./.	./.	0/1:54,14:14:68:0.206:2	0/1:78,16:13:94:0.170:2	0/1:41,15:14:56:0.268:2	0/1:74,19:13:93:0.204:2
chr8	102213962	rs202198915	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,5:22:31:0.161:2	0/1:32,8:17:40:0.200:2	./.	0/1:74,8:18:82:0.098:2	./.	0/1:56,10:13:66:0.152:2
chr8	102504974	rs515622	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,133:32:133:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,163:33:164:1.00:2	0/1:0,186:32:186:1.00:2	0/1:0,149:32:149:1.00:2	0/1:0,187:32:187:1.00:2	0/1:1,183:32:184:0.995:2	0/1:0,185:33:186:1.00:2	0/1:0,119:33:119:1.00:2	0/1:0,151:32:151:1.00:2
chr8	102644486	rs150909082	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.	./.
chr8	103226334	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:34:74:0.054:2
chr8	103266699	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,20:33:165:0.121:2
chr8	103273395	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:33:189:0.021:2	./.	./.	./.
chr8	103276753	rs12707772	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,12:33:18:0.667:2	./.	0/1:59,22:32:81:0.272:2	./.	./.	./.	./.	./.	./.
chr8	103306033	rs16869352	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,51:32:95:0.537:2	0/1:47,22:32:69:0.319:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	103307434	rs34739767	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,30:31:48:0.625:2	./.
chr8	103307533	rs9650002	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:33:6:0.500:2	./.	0/1:37,12:31:49:0.245:2	./.	./.	./.	./.	./.	./.
chr8	103572992	rs3018444	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:29:77:1.00:2	0/1:0,53:29:53:1.00:2	0/1:4,5:30:9:0.556:2	0/1:2,97:30:99:0.980:2	0/1:0,107:29:107:1.00:2	0/1:0,96:29:96:1.00:2	0/1:0,103:30:103:1.00:2	0/1:1,135:29:136:0.993:2	0/1:0,85:30:85:1.00:2	0/1:0,84:29:84:1.00:2	0/1:0,105:29:105:1.00:2
chr8	103573001	rs3018445	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:29:69:1.00:2	0/1:0,52:28:52:1.00:2	0/1:4,5:31:9:0.556:2	0/1:2,91:30:93:0.978:2	0/1:0,101:29:101:1.00:2	0/1:39,51:29:90:0.567:2	0/1:1,89:30:90:0.989:2	0/1:2,123:29:125:0.984:2	./.	0/1:0,69:30:69:1.00:2	0/1:0,88:29:88:1.00:2
chr8	103573006	rs2916569	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:28:66:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,97:29:98:1.00:2	0/1:0,94:27:94:1.00:2	0/1:35,48:28:84:0.578:2	0/1:1,82:28:83:0.988:2	0/1:1,120:29:122:0.992:2	./.	0/1:0,67:28:68:1.00:2	0/1:0,83:28:86:1.00:2
chr8	103573015	rs62523271	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,24:32:74:0.324:2	./.	./.	0/1:0,43:32:43:1.00:2	./.	./.
chr8	103573019	rs143802899	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.
chr8	103573033	rs62523272	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,12:34:54:0.226:2	./.	./.	0/1:0,18:34:18:1.00:2	./.	./.
chr8	103573037	rs62523273	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,13:33:54:0.241:2	./.	./.	0/1:0,24:34:24:1.00:2	./.	./.
chr8	103663390	rs149887425	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,88:32:170:0.518:2	./.
chr8	103663912	rs11552577	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,70:29:129:0.543:2	./.	./.	0/1:53,80:30:133:0.602:2
chr8	103841709	rs62522600	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,17:30:44:0.386:2	./.	./.	./.	./.
chr8	103851052	rs1062048	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,75:30:191:0.393:2	./.	./.	0/1:90,88:29:178:0.494:2	./.	0/1:97,91:30:188:0.484:2	./.	./.
chr8	104153137	rs3736043	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	0/1:3,4:30:7:0.571:2	./.	./.
chr8	104312341	rs3736047	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,48:33:100:0.480:2	0/1:32,31:33:63:0.492:2	0/1:5,10:33:15:0.667:2	0/1:75,63:33:138:0.457:2	0/1:41,47:32:88:0.534:2	0/1:70,60:33:130:0.462:2	0/1:48,32:32:80:0.400:2	0/1:1,113:33:114:0.991:2	0/1:80,72:34:152:0.474:2	0/1:0,91:32:91:1.00:2	./.
chr8	104312432	rs827528	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,5:33:18:0.278:2	0/1:90,102:33:192:0.531:2	./.	0/1:102,89:32:191:0.466:2	./.	./.	0/1:110,85:33:195:0.436:2	./.	0/1:2,174:33:176:0.989:2
chr8	104337096	rs3808554	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,45:34:82:0.549:2	0/1:30,22:32:52:0.423:2	0/1:8,7:33:15:0.467:2	0/1:43,32:33:75:0.427:2	0/1:58,29:33:87:0.333:2	0/1:52,35:33:87:0.402:2	0/1:80,51:32:131:0.389:2	0/1:1,84:32:85:0.988:2	0/1:53,43:33:96:0.448:2	0/1:0,90:33:90:1.00:2	./.
chr8	104337367	rs3808553	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:107,81:33:188:0.431:2	0/1:48,38:33:86:0.442:2	0/1:27,7:32:34:0.206:2	0/1:88,83:32:171:0.485:2	0/1:110,85:32:195:0.436:2	0/1:99,85:32:184:0.462:2	0/1:106,82:33:190:0.436:2	0/1:3,180:33:183:0.984:2	0/1:98,99:34:198:0.503:2	0/1:0,175:33:175:1.00:2	./.
chr8	104343686	rs1053917	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,27:33:62:0.435:2	0/1:20,17:33:37:0.459:2	0/1:8,4:34:12:0.333:2	0/1:44,37:32:81:0.457:2	0/1:23,20:33:43:0.465:2	0/1:32,40:32:72:0.556:2	0/1:30,38:33:68:0.559:2	0/1:0,61:32:61:1.00:2	0/1:48,42:33:90:0.467:2	0/1:2,67:33:69:0.971:2	./.
chr8	104388035	rs149662990	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,52:28:87:0.598:2
chr8	104394744	rs3098233	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,67:32:138:0.486:2	0/1:42,46:33:88:0.523:2	0/1:0,20:33:20:1.00:2	0/1:0,169:32:169:1.00:2	0/1:89,63:32:152:0.414:2	0/1:0,174:32:174:1.00:2	0/1:0,145:32:145:1.00:2	0/1:109,75:32:184:0.408:2	0/1:0,176:33:176:1.00:2	0/1:0,144:32:144:1.00:2	0/1:3,177:32:180:0.983:2
chr8	104414267	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:31:100:0.040:2
chr8	104417045	rs17803441	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:44,45:31:89:0.506:2	0/1:29,16:32:45:0.356:2	./.	./.	0/1:56,51:31:107:0.477:2	./.	./.	./.	./.	./.	./.
chr8	104427359	rs3134295	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,34:32:71:0.479:2	0/1:31,14:31:45:0.311:2	0/1:16,7:31:23:0.304:2	0/1:65,71:32:137:0.522:2	0/1:86,42:31:128:0.328:2	0/1:84,32:33:116:0.276:2	./.	0/1:85,70:32:155:0.452:2	0/1:72,48:33:120:0.400:2	./.	0/1:31,24:30:55:0.436:2
chr8	104427424	rs145230539	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,36:29:85:0.424:2	./.
chr8	104427541	rs3134296	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,29:29:53:0.547:2	./.	./.	./.
chr8	104427578	rs3134297	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:26,24:33:50:0.480:2	0/1:4,15:33:19:0.789:2	./.	./.	0/1:24,39:31:63:0.619:2	./.	./.	0/1:22,37:32:59:0.627:2	./.	./.	./.
chr8	104432545	rs3134253	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:62,47:33:109:0.431:2	0/1:27,30:33:57:0.526:2	./.	./.	0/1:44,54:32:98:0.551:2	./.	./.	0/1:70,81:33:151:0.536:2	./.	./.	./.
chr8	104432631	rs3098238	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:69,39:33:108:0.361:2	0/1:40,44:33:84:0.524:2	./.	./.	0/1:66,77:32:143:0.538:2	./.	./.	./.	./.	./.	./.
chr8	104438340	rs113982117	C	G,T	.	PASS	AC=1,1;AF=0.167,0.167;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:BQ:DP:FA:SS	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0/2:32:19:0.579:2	./.	./.	./.	./.	./.	./.	0/1:31:76:0.053:2	./.
chr8	104438348	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:31:68:0.059:2	./.
chr8	104439421	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:169,6:32:176:0.034:2	./.	./.	./.	./.	./.	./.
chr8	104447889	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:33:49:0.082:2	./.	./.
chr8	104447953	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:33:84:0.048:2	./.	./.
chr8	104452376	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:31:82:0.049:2	./.	./.
chr8	104455066	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:32:80:0.050:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	104455094	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:30:78:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	104933910	rs138369781	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,43:34:97:0.443:2	./.	./.
chr8	105263979	rs10461	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,38:33:77:0.494:2	0/1:28,24:32:52:0.462:2	0/1:4,8:32:12:0.667:2	0/1:0,94:32:94:1.00:2	0/1:35,40:32:75:0.533:2	./.	./.	0/1:0,89:32:89:1.00:2	./.	./.	0/1:66,40:33:106:0.377:2
chr8	105361095	rs3088027	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:69,38:32:107:0.355:2	0/1:34,23:31:57:0.404:2	./.	./.	./.	./.	./.	0/1:70,43:32:113:0.381:2	./.	0/1:71,40:32:111:0.360:2	./.
chr8	105361354	rs67114147	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:5,18:31:23:0.783:2	0/1:10,15:33:25:0.600:2	./.	./.	./.	./.	./.	0/1:10,18:31:28:0.643:2	./.	0/1:15,9:33:24:0.375:2	./.
chr8	105367121	rs3802204	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:32,26:33:58:0.448:2	0/1:15,27:32:42:0.643:2	./.	./.	./.	./.	./.	0/1:25,24:32:49:0.490:2	./.	0/1:25,36:32:61:0.590:2	./.
chr8	105478933	rs2298840	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	105503401	rs16871494	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,11:33:24:0.458:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	105503494	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,18:31:40:0.450:2	./.	./.	./.	./.
chr8	106813518	rs11993776	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,28:31:76:0.368:2	./.	./.	./.	0/1:0,98:32:98:1.00:2	./.	./.	./.
chr8	106813672	rs920628	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,21:29:34:0.618:2	./.	./.	./.	0/1:24,19:29:43:0.442:2	./.	./.	./.
chr8	106813838	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:32:86:0.047:2	./.
chr8	106814086	rs16873732	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,24:28:52:0.462:2	./.	./.	./.	0/1:31,26:30:57:0.456:2	./.	./.	./.
chr8	106814695	rs35998713	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,64:32:131:0.489:2	./.	./.	./.	0/1:68,66:32:134:0.493:2	./.	./.	./.
chr8	106815286	rs1442320	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,29:32:67:0.433:2	./.	./.	./.	0/1:29,31:32:60:0.517:2	./.	./.	./.
chr8	106815517	rs11995760	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,31:32:60:0.517:2	./.	./.	./.	0/1:17,19:32:36:0.528:2	./.	./.	./.
chr8	107715182	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,4:28:81:0.049:2	./.	./.	./.	./.	./.	./.
chr8	107752578	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,65:34:125:0.520:2	./.	./.
chr8	107754473	rs1681904	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,15:31:25:0.600:2	0/1:84,111:32:195:0.569:2	0/1:6,113:31:119:0.950:2	./.	./.	0/1:115,80:31:195:0.410:2	0/1:115,82:32:197:0.416:2	0/1:0,164:32:164:1.00:2	./.
chr8	107754477	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,5:27:199:0.025:2	./.	./.	./.
chr8	107763046	rs186196779	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,4:33:112:0.036:2	./.	./.	./.	./.	./.	./.	./.
chr8	107763075	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,5:33:144:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr8	107782065	rs13259080	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,12:30:16:0.750:2	./.	./.	0/1:86,90:29:176:0.511:2	./.	./.	./.	./.	./.
chr8	107782335	rs11996457	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,39:31:78:0.500:2	0/1:26,15:30:42:0.366:2	./.	./.	./.	0/1:40,30:31:70:0.429:2	0/1:38,44:32:82:0.537:2	./.	./.	./.	0/1:1,70:31:71:0.986:2
chr8	107782395	rs11996466	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,10:28:34:0.294:2	0/1:7,6:32:13:0.462:2	./.	./.	./.	0/1:0,28:30:28:1.00:2	0/1:14,13:31:27:0.481:2	./.	./.	./.	0/1:1,32:30:33:0.970:2
chr8	108334162	rs141029929	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,94:31:200:0.470:2	./.	./.	./.
chr8	108509636	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:31:172:0.023:2	./.	./.	./.	./.
chr8	108970367	rs601558	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:90,47:30:137:0.343:2	0/1:47,42:30:89:0.472:2	0/1:1,16:30:17:0.941:2	0/1:0,178:29:178:1.00:2	0/1:1,149:30:150:0.993:2	0/1:2,174:30:176:0.989:2	0/1:96,68:30:164:0.415:2	0/1:91,100:30:191:0.524:2	0/1:96,97:30:193:0.503:2	0/1:77,79:30:156:0.506:2	0/1:82,106:29:188:0.564:2
chr8	109254063	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,4:31:67:0.060:2	./.	./.	./.	./.	./.	./.	./.
chr8	109455863	rs3737502	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,12:32:12:1.00:2	0/1:0,12:32:12:1.00:2	./.	./.	./.	./.	./.	0/1:27,4:30:31:0.129:2	0/1:10,10:33:20:0.500:2	0/1:15,6:29:21:0.286:2	./.
chr8	110301998	rs2980618	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:79,45:31:124:0.363:2	0/1:40,24:30:64:0.375:2	./.	0/1:100,51:30:151:0.338:2	./.	./.	./.	0/1:101,64:30:165:0.388:2	./.	./.	./.
chr8	110302047	rs2980619	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:124,74:33:198:0.374:2	0/1:59,49:33:108:0.454:2	./.	0/1:118,75:33:193:0.389:2	./.	./.	./.	0/1:109,88:33:197:0.447:2	./.	0/1:110,88:33:198:0.444:2	./.
chr8	110376861	rs7008687	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:33:12:0.667:2	./.	./.	./.	./.	./.	./.	./.
chr8	110393640	rs189907709	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,24:32:53:0.453:2	./.	./.	./.	./.	./.
chr8	110397780	rs62508075	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:9,19:32:28:0.679:2	0/1:8,9:32:17:0.529:2	./.	./.	./.	./.	./.	0/1:11,7:33:18:0.389:2	./.	./.	./.
chr8	110412519	rs1379369	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,30:33:74:0.405:2	0/1:20,24:32:44:0.545:2	0/1:0,13:32:13:1.00:2	0/1:37,50:33:87:0.575:2	./.	./.	./.	0/1:1,54:32:55:0.982:2	./.	0/1:31,33:33:64:0.516:2	./.
chr8	110413762	rs964307	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:57,34:34:91:0.374:2	0/1:33,27:32:60:0.450:2	0/1:9,6:33:15:0.400:2	./.	./.	./.	./.	0/1:5,120:32:125:0.960:2	./.	./.	./.
chr8	110416813	rs1457286	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,45:31:81:0.556:2	0/1:37,29:32:66:0.439:2	0/1:0,7:30:7:1.00:2	0/1:59,46:31:105:0.438:2	./.	./.	./.	0/1:2,100:30:102:0.980:2	./.	0/1:52,35:31:87:0.402:2	./.
chr8	110420384	rs13254245	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:23,35:33:58:0.603:2	0/1:15,15:31:30:0.500:2	0/1:11,11:31:22:0.500:2	./.	./.	./.	./.	0/1:2,68:32:70:0.971:2	./.	./.	./.
chr8	110420429	rs13252234	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:31,25:33:56:0.446:2	0/1:15,16:32:31:0.516:2	0/1:8,8:32:16:0.500:2	./.	./.	./.	./.	0/1:1,89:32:90:0.989:2	./.	./.	./.
chr8	110437384	rs4735133	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,47:29:96:0.490:2	0/1:24,43:30:67:0.642:2	0/1:0,15:29:15:1.00:2	0/1:85,58:29:143:0.406:2	./.	./.	./.	0/1:0,105:29:105:1.00:2	./.	0/1:49,43:30:92:0.467:2	./.
chr8	110447512	rs142972518	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,37:29:101:0.366:2	./.	./.	./.	0/1:82,48:29:130:0.369:2
chr8	110448635	rs10093885	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:32:8:0.375:2	0/1:19,15:33:34:0.441:2	./.	./.	./.	./.	./.	0/1:19,19:32:38:0.500:2	./.
chr8	110454320	rs186176277	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,63:33:151:0.417:2
chr8	110455176	rs79040731	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,25:19:76:0.329:2	0/1:31,8:17:41:0.205:2	./.	0/1:54,24:16:78:0.308:2	0/1:25,17:16:42:0.405:2	0/1:31,27:15:58:0.466:2	0/1:26,12:14:39:0.316:2	0/1:40,24:16:64:0.375:2	0/1:31,19:13:50:0.380:2	0/1:22,15:19:37:0.405:2	0/1:65,33:20:98:0.337:2
chr8	110455184	rs201977371	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:66,17:14:83:0.205:2	0/1:37,9:22:46:0.196:2	./.	0/1:67,17:16:84:0.202:2	0/1:33,17:13:50:0.340:2	0/1:49,19:18:68:0.279:2	0/1:35,12:17:47:0.255:2	0/1:51,22:14:73:0.301:2	0/1:51,10:14:61:0.164:2	0/1:33,11:19:44:0.250:2	0/1:73,30:19:103:0.291:2
chr8	110455187	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,9:13:54:0.170:2	./.	./.	./.	./.	./.
chr8	110455321	rs1673408	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,38:33:62:0.613:2	0/1:15,26:33:41:0.634:2	0/1:0,8:30:8:1.00:2	0/1:0,55:31:55:1.00:2	./.	./.	./.	0/1:0,86:31:86:1.00:2	./.	0/1:26,33:32:59:0.559:2	./.
chr8	110457011	rs72687015	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,9:33:26:0.346:2	0/1:4,164:33:169:0.976:2	./.	./.	./.	./.	./.	0/1:87,98:33:185:0.530:2	./.
chr8	110460488	rs1673407	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,36:32:77:0.468:2	0/1:23,28:32:51:0.549:2	0/1:0,9:30:9:1.00:2	0/1:0,111:32:111:1.00:2	./.	./.	./.	0/1:1,102:32:103:0.990:2	./.	0/1:70,33:32:103:0.320:2	./.
chr8	110465060	rs1673404	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,9:32:22:0.409:2	0/1:8,5:33:13:0.385:2	0/1:0,3:31:3:1.00:2	0/1:0,19:33:19:1.00:2	./.	./.	./.	0/1:0,21:32:21:1.00:2	./.	0/1:12,10:33:22:0.455:2	./.
chr8	110476775	rs181520404	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,37:32:87:0.425:2	./.	./.	./.	./.	./.	./.	./.
chr8	110476993	rs1673398	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,29:27:62:0.468:2	0/1:25,17:27:42:0.405:2	0/1:0,9:28:9:1.00:2	0/1:1,61:28:62:0.984:2	./.	./.	./.	0/1:0,98:29:98:1.00:2	./.	0/1:18,22:27:40:0.550:2	./.
chr8	110489620	rs1783148	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:15,14:33:29:0.483:2	0/1:11,4:33:15:0.267:2	./.	0/1:1,28:32:29:0.966:2	./.	./.	./.	0/1:13,15:32:28:0.536:2	./.	0/1:12,7:29:19:0.368:2	./.
chr8	110491840	rs1783147	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:63,32:33:95:0.337:2	0/1:33,31:32:64:0.484:2	./.	0/1:2,75:33:77:0.974:2	./.	./.	./.	0/1:44,18:33:62:0.290:2	./.	0/1:35,35:33:70:0.500:2	./.
chr8	110505886	rs2607628	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:5,6:33:11:0.545:2	0/1:8,3:33:11:0.273:2	./.	0/1:0,18:31:18:1.00:2	./.	./.	./.	0/1:5,5:32:10:0.500:2	./.	0/1:3,3:31:6:0.500:2	./.
chr8	110510964	rs191412861	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,53:29:85:0.624:2
chr8	110534466	rs181620735	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:30:81:0.049:2	./.	./.	./.
chr8	110534512	rs1563578	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:30,17:33:47:0.362:2	0/1:28,9:31:37:0.243:2	./.	./.	./.	./.	./.	0/1:36,31:32:67:0.463:2	./.	./.	./.
chr8	110539186	rs1783174	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:68,54:32:122:0.443:2	0/1:30,34:32:64:0.531:2	./.	./.	./.	./.	./.	0/1:79,66:31:145:0.455:2	./.	./.	./.
chr8	110542298	rs1617259	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:33,22:30:55:0.400:2	0/1:23,27:32:50:0.540:2	./.	./.	./.	./.	./.	0/1:44,23:32:67:0.343:2	./.	./.	./.
chr8	110542337	rs1617350	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:39,37:33:76:0.487:2	0/1:32,33:33:65:0.508:2	./.	./.	./.	./.	./.	0/1:53,25:33:78:0.321:2	./.	./.	./.
chr8	110587136	rs187663186	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,39:34:71:0.549:2	./.	./.	./.	./.
chr8	110587975	rs61734661	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,52:30:126:0.413:2	./.	./.	./.	./.	./.	0/1:44,35:31:79:0.443:2	./.
chr8	110592108	rs10085994	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,55:33:128:0.430:2	./.	./.
chr8	113237045	rs4876458	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,91:33:191:0.476:2	./.	./.	./.	./.	./.	./.	./.
chr8	113241088	rs1592624	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:32:16:1.00:2	0/1:1,13:31:14:0.929:2	0/1:0,2:32:2:1.00:2	0/1:0,23:31:23:1.00:2	0/1:13,13:32:26:0.500:2	./.	0/1:0,27:33:27:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,24:33:24:1.00:2	0/1:16,11:33:27:0.407:2	0/1:20,17:33:37:0.459:2
chr8	113253961	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,13:33:48:0.271:2	./.	./.
chr8	113326179	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:29:83:0.048:2	./.	./.	./.	./.
chr8	113364696	rs11778209	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,31:32:70:0.443:2	0/1:13,28:32:41:0.683:2	./.	0/1:2,55:32:57:0.965:2	./.	0/1:0,58:33:58:1.00:2	./.	0/1:47,38:33:85:0.447:2
chr8	113649170	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:34:97:0.041:2	./.	./.
chr8	113655752	rs10505168	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,21:32:38:0.553:2	0/1:35,17:32:52:0.327:2	0/1:29,18:32:47:0.383:2	./.	./.	0/1:37,18:33:55:0.327:2	0/1:37,21:33:58:0.362:2
chr8	114186003	rs2219898	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,44:33:92:0.478:2	0/1:39,26:32:65:0.400:2	0/1:0,17:33:17:1.00:2	0/1:4,92:33:96:0.958:2	./.	0/1:121,4:32:125:0.032:2	./.	0/1:72,35:32:107:0.327:2	0/1:1,99:34:100:0.990:2	0/1:34,44:33:78:0.564:2	0/1:65,49:32:114:0.430:2
chr8	114290825	rs17608189	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,28:33:73:0.384:2	./.	./.
chr8	114388945	rs17609383	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,11:30:30:0.367:2	0/1:12,9:31:21:0.429:2	0/1:0,2:28:2:1.00:2	0/1:26,16:30:42:0.381:2	./.	./.	./.	0/1:20,14:30:34:0.412:2	0/1:0,27:31:27:1.00:2	./.	./.
chr8	116430620	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,6:33:113:0.053:2	./.	./.	./.	./.	./.	./.	./.
chr8	116616232	rs367794981	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:33:184:0.022:2
chr8	116631463	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:33:143:0.028:2	./.
chr8	117778909	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,8:27:41:0.195:2	./.	0/1:38,7:28:45:0.156:2	./.	./.	./.	0/1:54,4:31:58:0.069:2
chr8	117778911	.	C	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:45,21:29:66:0.318:2	./.	./.	0/1:37,29:29:66:0.439:2	0/1:29,69:28:98:0.704:2	0/1:53,29:29:82:0.354:2	0/1:36,49:29:85:0.576:2	0/1:27,32:30:59:0.542:2	0/1:47,31:28:79:0.397:2	0/1:45,26:29:71:0.366:2	0/1:45,34:30:79:0.430:2
chr8	117783914	rs1133950	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,53:33:114:0.465:2	./.	./.	./.	./.	./.	./.	./.
chr8	117783975	rs16888728	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,10:32:21:0.476:2	./.	./.	./.	./.	./.	./.	./.
chr8	117783982	rs138695873	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,15:32:21:0.714:2	./.
chr8	117864217	rs1050838	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,33:29:70:0.471:2	./.	./.	0/1:81,44:29:125:0.352:2	./.	./.	./.
chr8	117868421	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:32:197:0.025:2	./.	./.	./.
chr8	117950538	rs371627416	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,20:29:44:0.455:2
chr8	117950621	rs147452901	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,17:30:36:0.472:2	./.	./.	./.	./.
chr8	118183326	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:31:149:0.027:2	./.	./.	./.	./.	./.
chr8	118184783	rs13266634	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:58,3:34:61:0.049:2	./.	./.	0/1:39,35:33:74:0.473:2	0/1:16,18:32:34:0.529:2	./.	0/1:38,24:33:62:0.387:2	./.	./.	0/1:28,32:34:60:0.533:2	./.
chr8	118819578	rs7837891	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,28:31:61:0.459:2	0/1:2,60:31:62:0.968:2	./.	./.	0/1:34,33:31:67:0.493:2	0/1:0,79:32:79:1.00:2	0/1:33,32:32:65:0.492:2	./.
chr8	118832020	rs17439693	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:31,33:32:64:0.516:2	0/1:25,16:32:41:0.390:2	./.	./.	0/1:23,13:31:36:0.361:2	./.	./.	./.	./.	./.	./.
chr8	118847782	rs11546829	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,4:33:8:0.500:2	0/1:39,46:31:85:0.541:2	./.	./.	./.	0/1:68,38:32:106:0.358:2	0/1:0,81:32:82:1.00:2	0/1:32,40:32:72:0.556:2	0/1:25,34:31:60:0.576:2
chr8	119391791	rs5020517	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:80,52:33:132:0.394:2	0/1:60,48:32:108:0.444:2	0/1:0,19:32:19:1.00:2	0/1:2,136:33:138:0.986:2	0/1:2,156:32:158:0.987:2	0/1:0,182:32:182:1.00:2	./.	0/1:0,190:32:190:1.00:2	0/1:1,172:33:173:0.994:2	0/1:0,134:32:134:1.00:2	./.
chr8	119391866	rs12171673	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,78:30:149:0.523:2	./.	0/1:3,141:30:144:0.979:2	./.	./.	0/1:107,66:32:173:0.382:2	0/1:93,63:30:156:0.404:2	./.
chr8	119391873	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:33:162:0.025:2
chr8	119938782	rs2228568	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,66:33:169:0.391:2	./.	./.
chr8	119964016	rs3102734	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,12:28:25:0.480:2	./.	./.	./.	./.	./.
chr8	119964052	rs2073618	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,11:31:26:0.423:2	0/1:14,5:32:19:0.263:2	./.	0/1:30,21:32:51:0.412:2	0/1:17,20:31:37:0.541:2	0/1:25,21:30:46:0.457:2	0/1:0,21:32:21:1.00:2	0/1:28,14:31:42:0.333:2	0/1:11,11:33:22:0.500:2	./.	0/1:2,10:32:12:0.833:2
chr8	120103440	rs200831321	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,57:33:93:0.613:2	./.
chr8	120114625	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:33:121:0.033:2
chr8	120116082	rs34834488	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,6:32:25:0.240:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	120233910	rs34920533	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,73:33:164:0.445:2	./.	./.	./.	./.
chr8	120429024	rs2279112	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,5:33:11:0.455:2	./.	./.	0/1:1,8:34:9:0.889:2	./.	./.
chr8	120431506	rs11538929	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,13:31:31:0.419:2	0/1:10,13:31:23:0.565:2	./.	./.	0/1:30,11:31:41:0.268:2	0/1:31,17:30:48:0.354:2	./.	./.	./.	./.	./.
chr8	120569877	rs2305129	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,37:31:94:0.394:2	0/1:26,28:30:54:0.519:2	./.	./.	./.	./.	./.	./.	0/1:68,39:32:107:0.364:2	./.	./.
chr8	120575184	rs1058913	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,26:29:74:0.351:2	0/1:23,25:32:48:0.521:2	./.	./.	./.	0/1:80,61:29:141:0.433:2	./.	./.	./.	./.	./.
chr8	120594726	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:33:139:0.029:2	./.	./.
chr8	120594762	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:31:140:0.029:2	./.	./.
chr8	120594802	rs4871364	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,37:30:69:0.536:2	0/1:35,20:29:55:0.364:2	./.	./.	./.	0/1:45,17:31:62:0.274:2	0/1:36,24:30:60:0.400:2	./.	./.	./.	./.
chr8	120596023	rs10283100	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:32:97:1.00:2	0/1:0,57:32:58:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,112:32:112:1.00:2	0/1:46,29:30:75:0.387:2	0/1:0,93:32:93:1.00:2	0/1:50,42:32:92:0.457:2	0/1:61,61:33:122:0.500:2	0/1:0,136:33:136:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,129:32:129:1.00:2
chr8	120744193	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,11:16:120:0.092:2	./.	./.	./.	./.	0/1:130,9:19:139:0.065:2
chr8	120744293	rs61753747	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,54:31:153:0.353:2
chr8	120744349	rs956748	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:32:152:0.026:2	./.	./.	./.
chr8	120790304	rs1509348	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:45,45:30:90:0.500:2	0/1:17,17:29:34:0.500:2	0/1:0,8:30:8:1.00:2	./.	0/1:2,39:29:41:0.951:2	0/1:34,30:29:64:0.469:2	0/1:3,41:29:44:0.932:2	0/1:32,39:29:71:0.549:2	0/1:57,48:31:105:0.457:2	./.	0/1:77,43:29:120:0.358:2
chr8	120793296	rs7002501	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,5:30:16:0.313:2	./.	./.	./.	./.
chr8	120801058	rs149772375	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,10:30:39:0.263:2	0/1:40,39:31:79:0.494:2	./.	./.	./.	./.	./.
chr8	120803637	rs9297605	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:46,44:33:90:0.489:2	0/1:24,41:32:65:0.631:2	0/1:0,18:32:18:1.00:2	./.	0/1:2,69:32:71:0.972:2	0/1:77,45:32:122:0.369:2	0/1:0,76:33:76:1.00:2	0/1:60,52:32:112:0.464:2	0/1:55,56:34:111:0.505:2	0/1:0,85:32:85:1.00:2	0/1:79,68:32:147:0.463:2
chr8	120803654	rs11996390	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,18:30:18:1.00:2	./.	./.	./.	0/1:50,26:31:76:0.342:2	./.	./.	./.	./.
chr8	120805690	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,10:32:20:0.500:2	./.	./.	./.	./.
chr8	120831728	rs112002462	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,6:33:8:0.750:2	./.	./.	./.	./.
chr8	120844782	rs17818842	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:32:6:1.00:2	./.	./.	./.	0/1:13,7:33:20:0.350:2	./.	./.	./.	./.
chr8	120847188	rs1055130	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:22,40:29:62:0.645:2	0/1:19,28:29:47:0.596:2	0/1:0,4:30:4:1.00:2	./.	0/1:0,34:29:34:1.00:2	0/1:37,27:29:64:0.422:2	0/1:0,40:31:40:1.00:2	0/1:52,33:29:85:0.388:2	0/1:37,34:30:71:0.479:2	0/1:0,58:29:58:1.00:2	0/1:49,44:30:93:0.473:2
chr8	120940652	rs16893299	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,19:33:37:0.514:2	0/1:19,8:32:27:0.296:2	./.	./.	./.	0/1:20,22:31:42:0.524:2	0/1:15,12:31:27:0.444:2	./.	0/1:22,17:33:39:0.436:2	./.	./.
chr8	120977489	rs34057546	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,5:33:17:0.294:2	./.
chr8	120977570	rs201433054	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,15:13:96:0.156:2	./.	./.	./.	./.	./.	./.
chr8	121013770	rs2271900	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,16:32:16:1.00:2	0/1:0,6:32:6:1.00:2	./.	./.	0/1:0,22:32:22:1.00:2	0/1:0,16:32:16:1.00:2	0/1:10,15:32:25:0.600:2	0/1:9,9:33:18:0.500:2	0/1:7,7:32:14:0.500:2	0/1:5,10:33:16:0.667:2	0/1:0,16:32:16:1.00:2
chr8	121019040	rs56833210	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,42:32:102:0.416:2	0/1:74,72:31:146:0.493:2	./.	./.	./.
chr8	121061879	rs4871827	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:77,78:31:155:0.503:2	0/1:50,36:31:86:0.419:2	0/1:20,27:32:47:0.574:2	./.	./.	./.	0/1:86,59:31:146:0.407:2	./.	0/1:86,48:32:134:0.358:2	./.	0/1:86,68:31:154:0.442:2
chr8	121210069	rs2305598	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,60:31:110:0.545:2	0/1:33,37:30:70:0.529:2	0/1:7,7:32:14:0.500:2	0/1:71,57:29:128:0.445:2	./.	0/1:65,45:30:111:0.409:2	0/1:3,61:30:64:0.953:2	0/1:83,53:31:136:0.390:2	0/1:86,67:30:153:0.438:2	0/1:0,76:30:76:1.00:2	0/1:75,70:30:145:0.483:2
chr8	121215991	rs2305600	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,34:31:75:0.453:2	0/1:19,15:30:34:0.441:2	0/1:10,5:31:15:0.333:2	0/1:46,37:29:83:0.446:2	./.	0/1:56,57:30:113:0.504:2	0/1:1,103:30:104:0.990:2	0/1:65,70:30:135:0.519:2	0/1:67,44:31:111:0.396:2	0/1:0,104:30:104:1.00:2	0/1:48,42:30:90:0.467:2
chr8	121219203	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,4:32:31:0.129:2	./.	./.	./.	./.	./.	./.
chr8	121228679	rs4870723	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,54:33:81:0.667:2	0/1:28,20:32:48:0.417:2	0/1:6,4:34:10:0.400:2	0/1:48,40:33:88:0.455:2	./.	0/1:50,36:32:86:0.419:2	0/1:5,77:33:82:0.939:2	0/1:56,44:32:100:0.440:2	0/1:52,32:33:84:0.381:2	0/1:0,94:33:94:1.00:2	0/1:55,44:31:99:0.444:2
chr8	121241012	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,3:32:37:0.081:2	./.	./.
chr8	121292947	rs17833744	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:17,21:33:38:0.553:2	0/1:10,4:32:14:0.286:2	0/1:5,4:31:9:0.444:2	./.	0/1:18,8:31:26:0.308:2	./.	0/1:3,26:31:29:0.897:2	0/1:13,14:31:27:0.519:2	./.	./.	./.
chr8	121293161	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,6:19:38:0.158:2	./.	./.	./.	./.	./.
chr8	121293179	rs117868350	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,11:30:62:0.177:2	./.	./.	./.	./.	./.
chr8	121298156	rs17833992	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,14:32:67:0.209:2	./.	0/1:2,62:32:64:0.969:2	./.	./.	./.	./.	./.
chr8	121383048	rs4463470	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:32:20:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,3:22:3:1.00:2	0/1:1,14:32:15:0.933:2	0/1:0,16:31:16:1.00:2	0/1:22,19:31:41:0.463:2	0/1:0,29:33:29:1.00:2	0/1:0,28:32:28:1.00:2	0/1:10,12:32:22:0.545:2	0/1:0,12:31:12:1.00:2	0/1:0,23:31:23:1.00:2
chr8	121463425	rs61753755	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:32:5:0.800:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	121528385	rs35511242	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,19:32:39:0.487:2	./.	./.	0/1:26,9:33:35:0.257:2	./.
chr8	121530190	rs13258848	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,56:33:56:1.00:2	0/1:0,33:32:33:1.00:2	./.	0/1:0,73:33:73:1.00:2	0/1:1,69:32:70:0.986:2	0/1:32,44:32:76:0.579:2	0/1:45,38:34:83:0.458:2	0/1:2,75:33:77:0.974:2	./.	0/1:33,22:33:55:0.400:2	0/1:55,40:34:95:0.421:2
chr8	121554177	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:31:156:0.026:2	./.	./.	./.
chr8	122626979	rs35375618	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,25:32:63:0.397:2	./.	./.	./.	./.	./.
chr8	123964011	rs61752912	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,14:32:33:0.424:2	./.	./.	./.	./.	./.
chr8	123964431	rs3204141	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:31:7:1.00:2	0/1:58,31:30:89:0.348:2	./.	./.	0/1:45,35:31:80:0.438:2	0/1:36,35:32:71:0.493:2	./.	0/1:23,41:32:64:0.641:2	0/1:23,37:31:60:0.617:2
chr8	123964639	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,4:33:40:0.103:2	./.	./.	./.	./.	./.
chr8	123964953	rs3808600	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:30,24:30:54:0.444:2	./.	./.	0/1:54,38:30:92:0.413:2	0/1:32,41:29:73:0.562:2	./.	0/1:6,20:31:26:0.769:2	0/1:23,24:31:47:0.511:2
chr8	123965193	rs111726812	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,31:30:64:0.484:2	./.	./.	./.	./.	./.
chr8	123966159	rs3802265	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,68:33:135:0.504:2	0/1:37,40:33:77:0.519:2	./.	./.	./.	0/1:4,160:32:164:0.976:2	./.	0/1:91,78:32:169:0.462:2	0/1:89,89:33:178:0.500:2	./.	0/1:62,72:32:134:0.537:2
chr8	124031541	rs2272722	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,22:31:49:0.449:2	./.	./.	0/1:30,39:33:69:0.565:2
chr8	124035984	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:32:83:0.048:2	./.
chr8	124121798	rs16897969	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:21,3:29:24:0.125:2	0/1:3,3:29:6:0.500:2	0/1:36,13:29:49:0.265:2	0/1:16,19:29:35:0.543:2	0/1:36,18:30:54:0.333:2	./.	0/1:24,31:29:55:0.564:2	0/1:17,18:30:35:0.514:2	./.	0/1:32,23:28:55:0.418:2
chr8	124138855	rs16898012	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,55:32:111:0.495:2	0/1:37,19:31:56:0.339:2	0/1:7,12:31:19:0.632:2	0/1:88,56:30:144:0.389:2	0/1:74,28:31:102:0.275:2	./.	./.	0/1:80,76:31:156:0.487:2	./.	0/1:73,28:30:101:0.277:2	./.
chr8	124138891	rs16898013	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,51:29:119:0.429:2	./.	0/1:49,21:30:70:0.300:2	./.
chr8	124140537	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:34:80:0.050:2	./.	./.
chr8	124140634	rs2385167	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,100:30:191:0.524:2	./.	0/1:67,61:31:129:0.477:2	./.
chr8	124142489	rs2272724	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,40:29:85:0.471:2	0/1:42,34:29:76:0.447:2	0/1:9,7:28:16:0.438:2	0/1:63,92:30:155:0.594:2	0/1:53,41:29:94:0.436:2	./.	./.	0/1:3,126:29:129:0.977:2	0/1:98,75:30:173:0.434:2	0/1:70,67:29:137:0.489:2	0/1:68,73:29:141:0.518:2
chr8	124154646	rs141224192	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,42:29:85:0.494:2	./.	./.	./.
chr8	124154697	rs10101626	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,13:31:22:0.591:2	0/1:17,11:32:28:0.393:2	0/1:4,4:32:8:0.500:2	0/1:25,16:30:41:0.390:2	0/1:16,24:30:40:0.600:2	./.	./.	./.	./.	./.	./.
chr8	124195254	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,7:24:101:0.070:2
chr8	124206324	rs7813708	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,22:31:58:0.379:2	0/1:50,36:31:86:0.419:2	./.	./.	./.
chr8	124251303	rs187067978	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,43:32:103:0.417:2	./.	./.	./.
chr8	124382184	rs117211505	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,84:32:161:0.522:2	./.	./.	./.
chr8	124440174	rs6999234	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,9:32:20:0.450:2	./.	./.	./.	0/1:9,8:31:17:0.471:2	0/1:21,9:34:30:0.300:2	0/1:23,12:29:35:0.343:2	0/1:17,21:32:38:0.553:2
chr8	124448736	rs7014678	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,85:33:173:0.491:2	./.	./.	./.	0/1:120,74:33:194:0.381:2	0/1:106,71:33:178:0.401:2	0/1:115,74:33:189:0.392:2	0/1:84,80:33:164:0.488:2
chr8	124448804	rs6470147	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,90:31:187:0.481:2	./.	./.	./.	0/1:103,94:31:197:0.477:2	0/1:107,74:32:181:0.409:2	0/1:110,68:32:178:0.382:2	0/1:101,81:32:182:0.445:2
chr8	124449466	rs3824250	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,15:31:53:0.283:2	./.	./.	./.	0/1:18,15:32:33:0.455:2	0/1:26,22:34:48:0.458:2	0/1:28,22:34:50:0.440:2	0/1:34,38:33:72:0.528:2
chr8	124525483	rs3739287	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:30:15:0.400:2	./.	0/1:109,6:32:115:0.052:2	./.	./.	./.	./.	./.	./.
chr8	124525537	rs35117009	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,59:32:115:0.513:2	./.	./.
chr8	124553222	rs4871385	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:40,29:29:69:0.420:2	0/1:19,15:27:34:0.441:2	./.	./.	./.	./.	0/1:56,21:28:77:0.273:2	0/1:56,49:28:105:0.467:2	./.	0/1:42,32:27:75:0.432:2	0/1:29,30:27:59:0.508:2
chr8	124658045	rs144109404	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,71:30:130:0.546:2	./.	./.	./.	./.
chr8	124658203	rs72711231	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,92:33:178:0.517:2	./.	./.
chr8	124658210	rs16898671	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,82:32:151:0.543:2	./.	./.	./.	./.	./.
chr8	124658214	rs11779866	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,6:29:17:0.353:2	0/1:174,4:31:178:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr8	124663895	rs16898689	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,18:34:41:0.439:2	./.	./.
chr8	124663987	rs16898691	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,16:30:52:0.308:2	./.	./.
chr8	124663995	rs151241896	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,20:32:43:0.465:2
chr8	124664113	rs11784175	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,9:30:42:0.214:2	0/1:14,15:30:29:0.517:2	./.	./.	./.	0/1:30,19:31:49:0.388:2	./.	0/1:42,27:30:69:0.391:2	./.	0/1:43,9:31:52:0.173:2	0/1:42,34:31:76:0.447:2
chr8	124664130	rs11780509	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,46:32:47:0.979:2	0/1:0,31:31:31:1.00:2	0/1:0,9:32:9:1.00:2	0/1:1,62:31:63:0.984:2	0/1:1,69:31:71:0.986:2	0/1:0,62:32:62:1.00:2	./.	0/1:46,30:32:76:0.395:2	0/1:38,37:33:75:0.493:2	0/1:45,14:32:59:0.237:2	0/1:55,33:32:88:0.375:2
chr8	124664167	rs11784192	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:29:56:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,9:29:9:1.00:2	0/1:1,88:30:89:0.989:2	0/1:2,91:29:93:0.978:2	0/1:0,91:30:91:1.00:2	0/1:1,131:30:132:0.992:2	0/1:50,50:30:100:0.500:2	0/1:52,47:31:99:0.475:2	0/1:0,83:30:83:1.00:2	0/1:59,43:29:102:0.422:2
chr8	124664594	rs61730397	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,102:31:106:0.962:2	./.	./.	0/1:47,41:32:88:0.466:2	./.
chr8	124664792	rs7387544	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,50:31:51:0.980:2	0/1:0,32:31:32:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,74:30:74:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,87:30:88:1.00:2	./.	0/1:62,45:30:108:0.421:2	0/1:54,44:33:98:0.449:2	0/1:46,25:33:71:0.352:2	0/1:34,35:31:69:0.507:2
chr8	124664873	rs7387792	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:32:73:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,13:31:13:1.00:2	0/1:1,117:32:118:0.992:2	0/1:1,132:32:133:0.992:2	0/1:0,146:32:146:1.00:2	0/1:0,137:32:137:1.00:2	0/1:86,75:32:161:0.466:2	0/1:60,71:33:131:0.542:2	0/1:3,103:32:106:0.972:2	0/1:62,48:32:110:0.436:2
chr8	124664874	rs7386562	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:29:74:1.00:2	0/1:0,36:27:36:1.00:2	0/1:0,13:29:13:1.00:2	0/1:0,117:30:117:1.00:2	0/1:0,131:30:131:1.00:2	0/1:0,147:30:147:1.00:2	0/1:0,137:29:137:1.00:2	0/1:86,75:29:161:0.466:2	0/1:59,71:30:130:0.546:2	0/1:2,103:29:105:0.981:2	0/1:61,48:29:110:0.440:2
chr8	124665124	rs61910739	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,9:32:10:0.900:2	./.	./.	./.	./.
chr8	124696867	rs2294015	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,27:31:54:0.500:2	0/1:24,16:31:40:0.400:2	0/1:0,7:32:7:1.00:2	0/1:0,102:31:102:1.00:2	0/1:57,50:30:107:0.467:2	./.	0/1:74,59:31:133:0.444:2	0/1:49,63:30:112:0.563:2	0/1:66,30:32:96:0.313:2	0/1:45,27:31:72:0.375:2	0/1:47,47:31:94:0.500:2
chr8	124701134	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:128,4:34:132:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr8	124710664	rs6995099	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,65:32:136:0.478:2	./.	./.	./.
chr8	124710729	rs2294013	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:50,37:31:87:0.425:2	0/1:30,24:30:54:0.444:2	0/1:0,7:33:7:1.00:2	./.	0/1:59,55:30:114:0.482:2	./.	0/1:82,64:31:146:0.438:2	./.	./.	0/1:45,44:32:89:0.494:2	0/1:67,38:31:105:0.362:2
chr8	124749610	rs6470179	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,75:32:131:0.573:2	0/1:21,32:31:53:0.604:2	0/1:0,20:30:20:1.00:2	0/1:0,107:30:107:1.00:2	0/1:0,69:29:69:1.00:2	0/1:0,91:29:91:1.00:2	0/1:0,117:30:117:1.00:2	0/1:71,68:30:139:0.489:2	0/1:0,152:32:152:1.00:2	0/1:0,127:31:127:1.00:2	0/1:0,130:31:130:1.00:2
chr8	124790923	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:30:110:0.036:2	0/1:155,6:29:161:0.037:2	0/1:180,6:30:186:0.032:2	./.	./.
chr8	124790967	rs201064827	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,8:32:117:0.068:2	0/1:162,6:32:168:0.036:2	0/1:154,6:32:160:0.038:2	./.	./.
chr8	124790988	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:31:97:0.041:2	./.	./.	./.	./.
chr8	124797890	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:32:162:0.025:2	0/1:74,5:33:79:0.063:2	0/1:157,4:32:161:0.025:2	0/1:138,6:33:144:0.042:2	./.	./.
chr8	124797925	.	T	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,5:31:164:0.030:2	0/1:90,7:31:97:0.072:2	0/1:182,10:30:192:0.052:2	0/1:128,6:32:134:0.045:2	./.	0/1:178,5:32:183:0.027:2
chr8	124797968	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,6:32:126:0.048:2	./.	./.	0/1:114,4:33:118:0.034:2
chr8	124798783	rs76243620	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,51:32:127:0.402:2	./.	./.	./.	0/1:80,65:33:145:0.448:2	./.	./.
chr8	124799550	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:168,4:32:172:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr8	124799552	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:164,6:31:170:0.035:2	./.	0/1:147,6:31:153:0.039:2	./.	./.	./.	./.	./.
chr8	124799602	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:128,4:31:132:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr8	124812017	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,6:30:93:0.065:2	./.	./.	./.	./.
chr8	124812047	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,6:28:125:0.048:2	./.	./.	./.	./.
chr8	124818447	rs2272684	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,31:33:93:0.333:2	./.	./.	./.	0/1:65,64:33:129:0.496:2
chr8	124824772	.	T	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:97,4:32:101:0.040:2	./.	0/1:120,8:32:128:0.063:2	./.	0/1:132,6:32:138:0.043:2	./.	0/1:138,7:30:145:0.048:2	0/1:143,6:33:149:0.040:2	./.	0/1:181,7:33:188:0.037:2
chr8	124824826	rs1946586	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,186:31:186:1.00:2	./.	0/1:0,26:30:26:1.00:2	./.	./.	./.	0/1:0,188:31:188:1.00:2	0/1:0,182:30:182:1.00:2	./.	0/1:0,175:30:176:1.00:2	0/1:0,174:31:174:1.00:2
chr8	124978406	rs74808242	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,60:31:139:0.432:2
chr8	124987478	rs7465584	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:84,70:29:154:0.455:2	0/1:54,31:28:85:0.365:2	0/1:0,18:29:18:1.00:2	./.	0/1:85,59:29:144:0.410:2	0/1:99,54:29:153:0.353:2	0/1:97,63:28:160:0.394:2	0/1:72,65:30:137:0.474:2	0/1:93,74:30:167:0.443:2	./.	0/1:0,137:29:137:1.00:2
chr8	125015570	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:33:129:0.031:2	./.	./.	./.	./.	./.
chr8	125035788	rs4358790	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,25:30:64:0.391:2	0/1:25,12:26:37:0.324:2	0/1:3,8:29:11:0.727:2	0/1:49,23:29:72:0.319:2	./.	0/1:40,25:29:65:0.385:2	0/1:29,36:29:65:0.554:2	0/1:2,72:29:74:0.973:2	0/1:39,31:31:70:0.443:2	0/1:0,63:30:63:1.00:2	0/1:51,28:28:79:0.354:2
chr8	125061895	rs4870887	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,4:31:11:0.364:2	0/1:68,62:31:130:0.477:2	./.	0/1:52,57:30:109:0.523:2	0/1:46,41:31:87:0.471:2	0/1:68,51:30:119:0.429:2	./.	0/1:55,41:30:96:0.427:2	0/1:58,70:31:128:0.547:2
chr8	125072426	rs4483140	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,22:32:44:0.500:2	0/1:28,12:31:40:0.300:2	0/1:0,9:33:9:1.00:2	0/1:0,55:33:55:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,44:32:44:1.00:2	0/1:34,20:33:54:0.370:2	0/1:0,37:32:37:1.00:2	0/1:0,44:32:44:1.00:2
chr8	125076589	rs7012186	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,33:33:78:0.423:2	0/1:18,29:33:47:0.617:2	0/1:0,9:31:9:1.00:2	0/1:0,106:32:106:1.00:2	0/1:1,87:32:88:0.989:2	0/1:0,108:33:108:1.00:2	0/1:3,89:32:92:0.967:2	0/1:0,114:32:114:1.00:2	0/1:56,43:34:99:0.434:2	0/1:0,92:33:92:1.00:2	0/1:0,89:34:89:1.00:2
chr8	125107201	rs6470219	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,48:33:84:0.571:2	0/1:32,23:33:55:0.418:2	0/1:0,6:31:6:1.00:2	0/1:0,102:33:102:1.00:2	0/1:0,62:33:62:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,90:33:90:1.00:2	0/1:0,91:33:91:1.00:2	0/1:48,42:34:90:0.467:2	0/1:0,82:33:82:1.00:2	0/1:0,93:33:93:1.00:2
chr8	125107207	rs6470220	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,51:32:87:0.586:2	0/1:34,24:32:58:0.414:2	0/1:0,6:30:6:1.00:2	0/1:0,100:31:100:1.00:2	0/1:0,71:32:71:1.00:2	0/1:1,94:30:95:0.989:2	0/1:1,83:32:84:0.988:2	0/1:0,102:32:103:1.00:2	0/1:49,44:33:93:0.473:2	0/1:0,87:31:87:1.00:2	0/1:0,94:31:94:1.00:2
chr8	125109514	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	125115420	rs56132579	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,12:32:32:0.375:2	./.	./.	./.
chr8	125339607	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:31:126:0.032:2	./.
chr8	125343052	rs72711173	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,11:32:26:0.423:2	./.	./.
chr8	125463250	rs3812475	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:29:9:1.00:2	./.	./.	0/1:39,33:28:72:0.458:2	0/1:0,58:29:58:1.00:2	0/1:0,95:29:95:1.00:2	0/1:36,34:31:70:0.486:2	0/1:0,52:30:52:1.00:2	./.
chr8	125463544	rs11556913	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,10:32:20:0.500:2	./.	./.	./.	0/1:7,120:32:127:0.945:2	0/1:4,127:32:131:0.969:2	./.	0/1:1,74:32:75:0.987:2	./.
chr8	125463739	rs145417897	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,93:32:189:0.492:2	./.	./.	./.	./.	./.	./.
chr8	125498087	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:33:199:0.020:2
chr8	125498096	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:31:124:0.032:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	125498547	rs3812471	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:31:6:1.00:2	0/1:91,4:33:95:0.042:2	./.	0/1:37,53:30:90:0.589:2	0/1:3,62:31:65:0.954:2	0/1:0,93:31:93:1.00:2	0/1:39,39:32:78:0.500:2	0/1:0,72:31:72:1.00:2	./.
chr8	125528135	rs11542673	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:34:166:0.024:2	./.	./.	./.	./.
chr8	125551312	rs138684282	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,13:30:24:0.542:2	0/1:5,3:32:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	125562029	rs10195	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,32:31:50:0.640:2	./.	./.	0/1:22,24:32:46:0.522:2	./.	./.
chr8	125565328	rs3829037	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,7:30:21:0.333:2	./.	./.	0/1:105,83:32:188:0.441:2	./.	0/1:88,91:33:179:0.508:2	0/1:88,90:34:178:0.506:2	0/1:81,90:33:171:0.526:2	./.
chr8	125568623	rs3829036	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:30:10:0.300:2	./.	./.	0/1:32,36:30:69:0.529:2	0/1:40,27:29:67:0.403:2	./.	./.	./.	./.
chr8	125716355	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,55:30:110:0.500:2	./.	./.
chr8	125740204	rs78566090	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,17:30:41:0.415:2	./.	./.
chr8	125989460	rs10104558	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:33:5:0.800:2	./.	./.	./.
chr8	125989649	rs10105106	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,14:31:55:0.255:2	./.	0/1:16,19:32:35:0.543:2	./.	./.	./.
chr8	125989698	rs16900167	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,12:30:35:0.343:2	0/1:13,26:31:39:0.667:2	./.	0/1:19,13:31:32:0.406:2	./.	./.	./.
chr8	125989852	rs10107774	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,24:31:51:0.471:2	./.	0/1:24,22:32:46:0.478:2	./.	./.	./.
chr8	125990079	rs73706181	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,7:32:13:0.538:2	./.	0/1:6,5:32:11:0.455:2	./.	./.	./.
chr8	126015652	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:32:185:0.022:2
chr8	126033096	rs6989548	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,40:30:78:0.513:2	./.	./.	./.	0/1:85,37:30:122:0.303:2	./.	./.
chr8	126034052	rs2293985	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,50:33:100:0.500:2	./.	./.	./.	0/1:92,58:34:150:0.387:2	./.	./.
chr8	126036897	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:32:121:0.033:2	./.
chr8	126044527	rs11542889	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,32:31:61:0.525:2	./.	0/1:24,30:32:54:0.556:2	./.	./.	./.	0/1:16,20:31:36:0.556:2	./.
chr8	126071452	rs3765213	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,45:32:109:0.413:2	./.	./.	./.	0/1:98,92:34:191:0.484:2	./.	./.
chr8	126075796	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,5:27:133:0.038:2	./.	./.	./.	./.
chr8	126091094	rs7812319	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,67:29:160:0.419:2	./.	./.	./.	0/1:110,67:31:177:0.379:2	./.	./.
chr8	126443348	rs2385113	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:28:3:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr8	127568753	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,6:28:15:0.400:2
chr8	128428638	rs6998061	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,21:30:35:0.600:2	0/1:9,6:32:15:0.400:2	0/1:1,2:31:3:0.667:2	0/1:18,12:31:30:0.400:2	0/1:12,4:33:16:0.250:2	./.	0/1:2,20:32:22:0.909:2	0/1:16,15:32:31:0.484:2	0/1:9,15:33:24:0.625:2	0/1:0,17:32:17:1.00:2	0/1:19,14:31:33:0.424:2
chr8	128428656	rs13273814	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,9:33:26:0.346:2	./.	0/1:17,23:30:40:0.575:2
chr8	128428751	rs13274084	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,33:30:69:0.478:2	./.	0/1:27,49:28:76:0.645:2
chr8	128428790	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,6:24:88:0.069:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	128428795	rs6998254	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,81:31:87:0.931:2	0/1:3,45:31:48:0.938:2	0/1:1,5:28:6:0.833:2	0/1:2,69:32:71:0.972:2	0/1:3,64:30:67:0.955:2	0/1:70,32:31:102:0.314:2	0/1:4,88:32:92:0.957:2	0/1:65,63:32:128:0.492:2	0/1:63,34:32:97:0.351:2	0/1:4,79:32:83:0.952:2	0/1:80,44:31:124:0.355:2
chr8	128428823	rs7002225	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:7,111:32:119:0.941:2	0/1:4,56:32:60:0.933:2	0/1:1,7:31:8:0.875:2	0/1:2,90:32:92:0.978:2	0/1:2,86:32:89:0.977:2	0/1:75,44:32:119:0.370:2	0/1:7,104:31:111:0.937:2	0/1:81,79:32:161:0.494:2	0/1:77,37:32:114:0.325:2	0/1:5,96:32:101:0.950:2	0/1:92,57:31:149:0.383:2
chr8	128429217	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:30:97:0.041:2
chr8	128429262	rs9297754	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:32:36:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,7:32:7:1.00:2	0/1:1,34:32:35:0.971:2	0/1:0,44:31:44:1.00:2	0/1:1,35:31:36:0.972:2	0/1:0,34:31:34:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,54:31:54:1.00:2
chr8	128429315	rs9297755	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:32:44:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,7:31:7:1.00:2	0/1:1,20:31:21:0.952:2	0/1:0,29:31:29:1.00:2	0/1:1,25:31:26:0.962:2	0/1:0,17:31:17:1.00:2	0/1:0,29:32:29:1.00:2	0/1:94,12:33:106:0.113:2	0/1:1,23:32:24:0.958:2	0/1:85,17:31:102:0.167:2
chr8	128429376	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,8:32:79:0.101:2	./.	./.	./.	./.	0/1:128,10:31:138:0.072:2	./.	0/1:156,4:33:160:0.025:2
chr8	128429419	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,8:15:51:0.157:2	./.	./.	./.	./.	./.	./.
chr8	128429428	rs3179559	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,9:28:79:0.114:2	./.	./.	./.
chr8	128429440	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,7:30:38:0.184:2	./.	./.	./.	./.	./.
chr8	128750540	rs4645959	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,35:32:72:0.486:2	./.	./.	./.	./.	0/1:22,15:30:37:0.405:2
chr8	128750758	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,4:32:67:0.060:2	./.	./.	./.	./.	./.	./.	./.
chr8	128751201	rs2070582	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,8:29:14:0.571:2	./.
chr8	129021179	rs2114358	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,67:32:70:0.957:2	0/1:0,36:32:36:1.00:2	0/1:9,6:31:15:0.400:2	0/1:65,45:31:110:0.409:2	0/1:43,38:31:81:0.469:2	0/1:0,86:31:86:1.00:2	0/1:52,34:31:86:0.395:2	0/1:0,103:31:103:1.00:2	0/1:74,57:32:131:0.435:2	0/1:0,93:32:93:1.00:2	0/1:0,98:32:98:1.00:2
chr8	129162433	rs2648841	G	T,A	.	PASS	AC=3,1;AF=0.250,0.083;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8	GT:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	0/1:31:3:1.00:2	./.	0/1:29:28:0.679:2	0/2:30:20:0.350:2	./.	0/1:31:43:0.558:2	./.	./.	./.
chr8	130760774	rs4733559	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,48:32:101:0.475:2	./.	0/1:50,49:32:99:0.495:2	./.	./.
chr8	130760850	rs4144738	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,98:30:98:1.00:2	0/1:0,57:29:57:1.00:2	0/1:12,8:30:20:0.400:2	0/1:68,50:29:118:0.424:2	0/1:64,77:29:141:0.546:2	./.	0/1:55,62:30:117:0.530:2	0/1:1,140:29:141:0.993:2	0/1:59,59:30:118:0.500:2	./.	0/1:57,60:30:117:0.513:2
chr8	130760889	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:33:110:0.036:2	./.	./.	./.
chr8	130762317	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,3:34:49:0.061:2	./.	./.	./.
chr8	130764365	rs115758556	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,27:31:60:0.450:2	./.	./.	./.
chr8	130774897	rs17190932	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,25:33:25:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:65,32:32:97:0.330:2
chr8	130777995	rs16904151	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,43:32:84:0.512:2	./.	./.	./.
chr8	131124559	rs966185	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,77:32:78:0.987:2	0/1:0,56:32:56:1.00:2	./.	0/1:56,43:32:99:0.434:2	0/1:34,25:32:59:0.424:2	0/1:42,33:31:75:0.440:2	./.	0/1:3,108:32:111:0.973:2	0/1:49,37:33:86:0.430:2	./.	0/1:37,42:32:79:0.532:2
chr8	131130895	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:34:145:0.028:2
chr8	131172206	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:33:97:0.042:2	./.	./.
chr8	131862049	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:31:156:0.026:2
chr8	131921956	rs12547243	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,44:29:82:0.537:2	0/1:56,26:27:82:0.317:2	0/1:0,14:28:14:1.00:2	0/1:86,60:29:146:0.411:2	0/1:70,45:28:115:0.391:2	0/1:87,56:29:143:0.392:2	0/1:2,110:29:112:0.982:2	0/1:1,120:28:122:0.992:2	0/1:102,67:30:169:0.396:2	0/1:0,89:29:89:1.00:2	0/1:96,67:29:163:0.411:2
chr8	131922027	rs12545028	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,51:30:97:0.526:2	0/1:35,36:30:71:0.507:2	./.	./.	./.	./.	./.	./.	0/1:97,72:30:169:0.426:2	./.	0/1:79,75:30:155:0.487:2
chr8	131964235	rs201402635	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,7:19:56:0.127:2	./.
chr8	132002770	rs2228950	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:31:5:1.00:2	0/1:31,20:31:51:0.392:2	0/1:27,13:31:40:0.325:2	./.	./.	./.	./.	./.	./.
chr8	132052342	rs2228949	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr8	132982824	rs1051221	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:30:50:1.00:2	0/1:0,32:30:32:1.00:2	0/1:6,4:31:10:0.400:2	0/1:0,58:30:58:1.00:2	0/1:0,45:29:45:1.00:2	0/1:39,23:29:62:0.371:2	0/1:23,30:29:53:0.566:2	0/1:43,27:30:71:0.386:2	./.	0/1:0,50:31:50:1.00:2	./.
chr8	132999936	rs2270875	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:33:14:0.500:2	./.	./.	./.	0/1:39,39:33:80:0.500:2	0/1:66,39:31:105:0.371:2	./.	./.	./.
chr8	133047071	rs11779306	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,16:31:38:0.421:2	0/1:13,21:31:34:0.618:2	./.	./.	./.	0/1:0,74:31:74:1.00:2	0/1:57,38:31:95:0.400:2	./.	0/1:51,32:31:83:0.386:2	0/1:26,29:32:55:0.527:2	./.
chr8	133048593	rs1472571	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,8:32:34:0.235:2	0/1:8,10:32:18:0.556:2	./.	0/1:30,7:33:37:0.189:2	./.	0/1:18,15:32:33:0.455:2	0/1:22,13:32:35:0.371:2	0/1:0,50:32:50:1.00:2
chr8	133048619	rs7461611	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,27:34:50:0.540:2	0/1:17,15:33:32:0.469:2	./.	0/1:33,14:33:47:0.298:2	0/1:11,15:33:26:0.577:2	0/1:1,47:32:48:0.979:2	0/1:0,39:33:39:1.00:2	./.	0/1:0,39:34:39:1.00:2	0/1:0,44:33:44:1.00:2	0/1:0,47:32:47:1.00:2
chr8	133051325	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:31:110:0.036:2	./.	./.	./.
chr8	133053309	rs7386782	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,26:31:47:0.553:2	0/1:20,13:29:33:0.394:2	./.	0/1:59,26:29:85:0.306:2	0/1:31,29:29:60:0.483:2	0/1:1,65:30:66:0.985:2	0/1:0,80:30:80:1.00:2	./.	0/1:0,66:31:66:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,67:30:67:1.00:2
chr8	133053318	rs7386783	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,22:30:43:0.512:2	0/1:20,13:29:33:0.394:2	./.	0/1:57,28:30:85:0.329:2	0/1:33,29:29:62:0.468:2	0/1:1,67:29:68:0.985:2	0/1:0,80:30:80:1.00:2	./.	0/1:0,65:30:65:1.00:2	0/1:0,59:29:59:1.00:2	0/1:0,66:29:66:1.00:2
chr8	133067315	rs4736538	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,18:33:32:0.563:2	0/1:7,6:33:13:0.462:2	./.	./.	0/1:23,5:31:28:0.179:2	0/1:2,33:32:35:0.943:2	0/1:11,20:32:31:0.645:2	./.	0/1:1,34:33:35:0.971:2	0/1:13,14:34:27:0.519:2	0/1:0,44:32:44:1.00:2
chr8	133089975	rs2280851	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,10:26:25:0.400:2	0/1:9,20:28:29:0.690:2	./.	0/1:17,19:30:36:0.528:2	0/1:0,20:28:20:1.00:2	0/1:0,38:28:38:1.00:2	0/1:17,12:29:29:0.414:2	0/1:0,38:29:38:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,39:27:39:1.00:2
chr8	133092138	rs2403730	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:98,95:31:193:0.492:2	0/1:62,73:32:135:0.541:2	0/1:0,31:31:31:1.00:2	0/1:98,88:31:187:0.473:2	./.	0/1:100,98:31:198:0.495:2	0/1:100,89:32:189:0.471:2	./.	0/1:83,109:32:192:0.568:2	0/1:89,99:32:189:0.527:2	./.
chr8	133101818	rs6471038	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,65:33:65:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,87:32:87:1.00:2
chr8	133107830	rs7833441	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:33:49:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,5:26:5:1.00:2	0/1:1,70:32:71:0.986:2	0/1:0,33:32:33:1.00:2	0/1:0,55:33:55:1.00:2	0/1:1,35:32:36:0.972:2	0/1:0,63:32:63:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,66:32:66:1.00:2	0/1:1,80:32:81:0.988:2
chr8	133108005	rs55906165	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:10,7:28:17:0.412:2	0/1:10,10:31:20:0.500:2	./.	./.	./.	./.	./.	0/1:25,25:30:50:0.500:2	./.	./.	./.
chr8	133111166	rs76625657	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,13:31:41:0.317:2	./.	./.
chr8	133111181	rs72715366	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:18,12:34:30:0.400:2	0/1:7,7:33:14:0.500:2	./.	./.	./.	./.	./.	0/1:21,22:32:43:0.512:2	0/1:30,15:34:45:0.333:2	./.	./.
chr8	133112392	rs1370568	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,14:31:14:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,2:31:2:1.00:2	0/1:10,11:30:21:0.524:2	0/1:0,20:30:20:1.00:2	0/1:0,27:31:27:1.00:2	0/1:2,9:30:11:0.818:2	0/1:5,9:31:14:0.643:2	0/1:0,30:32:30:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,17:31:17:1.00:2
chr8	133113445	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:32:155:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	133113531	rs34842500	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:32:102:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,10:33:10:1.00:2	0/1:42,43:32:85:0.506:2	0/1:1,63:32:64:0.984:2	0/1:0,81:31:81:1.00:2	0/1:22,36:32:58:0.621:2	0/1:0,73:32:73:1.00:2	0/1:0,100:33:100:1.00:2	0/1:41,62:32:104:0.602:2	0/1:46,53:32:99:0.535:2
chr8	133141822	rs114095081	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,68:29:126:0.540:2	./.	./.	./.	./.	./.	./.
chr8	133142243	rs185511111	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,15:31:35:0.429:2	./.	./.	./.	./.	./.	./.	./.
chr8	133196597	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,3:32:39:0.077:2	./.	./.	./.
chr8	133584558	rs9297853	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,94:33:198:0.475:2	./.	./.	0/1:113,81:32:194:0.418:2	0/1:98,98:32:196:0.500:2	./.	./.	0/1:95,96:33:191:0.503:2
chr8	133637659	rs2293979	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,12:31:12:1.00:2	0/1:62,63:30:125:0.504:2	./.	./.	0/1:55,42:31:97:0.433:2	0/1:2,128:30:130:0.985:2	./.	./.	0/1:88,75:32:164:0.460:2
chr8	133764112	rs117725783	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,55:32:123:0.447:2	./.	./.	./.	./.	./.
chr8	133806791	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,30:32:54:0.556:2	./.	./.	./.	./.	./.
chr8	133816201	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:31:94:0.043:2	./.	./.	./.
chr8	133844508	rs16904746	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:42,40:32:82:0.488:2	0/1:19,15:32:34:0.441:2	./.	./.	0/1:21,7:31:28:0.250:2	0/1:25,30:31:55:0.545:2	./.	0/1:34,28:31:62:0.452:2	0/1:37,46:33:83:0.554:2	./.	0/1:54,43:31:97:0.443:2
chr8	133885392	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:34:147:0.027:2	./.	./.
chr8	133900252	rs180223	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,33:31:60:0.550:2	0/1:17,21:32:38:0.553:2	./.	0/1:0,59:32:59:1.00:2	0/1:1,65:31:67:0.985:2	0/1:47,41:31:88:0.466:2	0/1:51,52:31:103:0.505:2	0/1:38,69:32:107:0.645:2	0/1:0,55:32:55:1.00:2	0/1:26,34:32:60:0.567:2	0/1:0,53:31:53:1.00:2
chr8	133900386	rs2069550	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,33:29:66:0.500:2	0/1:20,21:28:41:0.512:2	./.	0/1:1,89:28:90:0.989:2	0/1:1,102:28:103:0.990:2	0/1:47,55:29:102:0.539:2	0/1:69,66:29:135:0.489:2	0/1:64,56:29:120:0.467:2	0/1:1,100:31:101:0.990:2	0/1:40,23:29:63:0.365:2	0/1:0,77:29:77:1.00:2
chr8	133906136	rs16893332	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,42:30:111:0.378:2	./.	./.	./.	./.	./.	./.	./.
chr8	133909974	rs853326	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,25:28:55:0.455:2	0/1:24,16:28:40:0.400:2	./.	0/1:1,89:29:90:0.989:2	0/1:0,79:28:79:1.00:2	0/1:51,38:28:89:0.427:2	0/1:67,50:29:117:0.427:2	0/1:54,40:30:94:0.426:2	0/1:0,80:31:80:1.00:2	0/1:28,21:30:49:0.429:2	0/1:0,64:29:64:1.00:2
chr8	133913658	rs61746583	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,33:32:81:0.407:2
chr8	133920518	rs2069556	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,26:32:26:1.00:2	0/1:0,12:31:12:1.00:2	./.	0/1:20,13:32:33:0.394:2	0/1:0,34:31:34:1.00:2	0/1:20,14:33:34:0.412:2	0/1:20,16:29:36:0.444:2	./.	0/1:27,17:32:44:0.386:2	0/1:22,24:30:46:0.522:2	0/1:23,21:31:44:0.477:2
chr8	133931748	rs853304	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,57:28:59:0.966:2	0/1:0,24:28:24:1.00:2	./.	0/1:33,23:27:56:0.411:2	0/1:0,62:28:62:1.00:2	0/1:34,26:28:60:0.433:2	0/1:39,25:27:64:0.391:2	./.	0/1:42,25:29:67:0.373:2	0/1:26,29:29:55:0.527:2	0/1:0,58:28:58:1.00:2
chr8	133975283	rs2069561	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,100:31:102:0.980:2	0/1:0,46:31:46:1.00:2	./.	0/1:53,59:30:112:0.527:2	0/1:0,84:30:84:1.00:2	0/1:63,52:31:115:0.452:2	0/1:47,57:31:104:0.548:2	./.	0/1:74,66:31:140:0.471:2	0/1:70,48:31:118:0.407:2	0/1:82,69:30:151:0.457:2
chr8	133984058	rs2076740	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,31:32:58:0.534:2	0/1:19,17:32:36:0.472:2	./.	0/1:45,48:32:93:0.516:2	0/1:22,34:31:56:0.607:2	0/1:36,41:32:77:0.532:2	0/1:39,45:32:84:0.536:2	./.	0/1:43,35:32:78:0.449:2	0/1:39,32:32:72:0.451:2	0/1:49,53:32:102:0.520:2
chr8	134024278	rs61741457	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,10:32:20:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	134072427	rs199698295	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,78:32:132:0.591:2
chr8	134107312	rs73354644	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,43:30:107:0.402:2
chr8	134108453	rs2069568	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,9:31:16:0.563:2	0/1:1,96:32:97:0.990:2	./.	0/1:65,40:32:105:0.381:2	./.	0/1:65,38:32:103:0.369:2	./.	0/1:36,33:33:69:0.478:2	./.
chr8	134108546	rs2069569	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:28,34:29:62:0.548:2	0/1:27,19:29:46:0.413:2	0/1:0,8:29:8:1.00:2	./.	0/1:38,44:28:82:0.537:2	0/1:47,44:28:91:0.484:2	0/1:0,108:29:108:1.00:2	0/1:0,94:29:94:1.00:2	./.	0/1:39,28:29:67:0.418:2	0/1:49,52:27:101:0.515:2
chr8	134114771	rs4478553	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,18:31:33:0.545:2	./.	./.	./.	0/1:27,12:32:39:0.308:2	./.	./.	0/1:18,17:33:35:0.486:2
chr8	134114773	rs79243630	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,9:31:31:0.290:2	./.	./.	./.	./.
chr8	134125682	rs1133076	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,13:32:13:1.00:2	./.	0/1:7,6:32:13:0.462:2	./.	./.	./.	0/1:8,8:32:16:0.500:2	0/1:14,5:30:19:0.263:2
chr8	134144113	rs2294024	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,44:32:79:0.557:2	0/1:23,19:31:42:0.452:2	./.	0/1:39,49:31:88:0.557:2	0/1:35,35:32:70:0.500:2	0/1:2,69:31:71:0.972:2	0/1:1,52:31:53:0.981:2	0/1:48,33:32:81:0.407:2	./.	0/1:0,54:32:54:1.00:2	./.
chr8	134233024	rs72731540	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,22:31:36:0.611:2	0/1:17,25:30:42:0.595:2
chr8	134237635	rs35513885	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,40:31:102:0.392:2	./.	./.
chr8	134239713	rs34279368	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,55:33:104:0.529:2
chr8	134239770	rs3739261	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,54:32:113:0.478:2	0/1:49,31:32:80:0.388:2	0/1:9,4:32:13:0.308:2	0/1:172,5:33:177:0.028:2	0/1:2,185:33:187:0.989:2	0/1:100,78:32:178:0.438:2	./.	0/1:94,97:32:191:0.508:2	0/1:107,91:33:198:0.460:2	./.	0/1:78,88:32:166:0.530:2
chr8	134260174	rs2227262	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,43:32:96:0.448:2	./.
chr8	134292516	rs2272653	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,26:32:47:0.553:2	0/1:13,8:33:21:0.381:2	./.	0/1:0,26:33:26:1.00:2	0/1:2,23:33:25:0.920:2	0/1:0,31:33:31:1.00:2	0/1:4,12:34:17:0.750:2	0/1:0,27:32:27:1.00:2	0/1:26,21:32:47:0.447:2	0/1:0,21:33:21:1.00:2	0/1:1,28:31:29:0.966:2
chr8	134474148	rs1048479	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,29:32:67:0.433:2	0/1:17,33:33:50:0.660:2	0/1:6,3:32:9:0.333:2	0/1:47,49:33:97:0.510:2	0/1:65,43:32:108:0.398:2	0/1:83,54:32:137:0.394:2	0/1:97,73:33:170:0.429:2	0/1:73,85:32:158:0.538:2	0/1:0,134:33:134:1.00:2	0/1:42,41:33:83:0.494:2	0/1:41,37:33:78:0.474:2
chr8	134478308	rs116342938	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,53:33:127:0.417:2	./.	./.	./.	./.
chr8	134488007	rs2230542	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,31:32:67:0.463:2	0/1:18,13:32:31:0.419:2	0/1:0,11:33:11:1.00:2	0/1:1,110:31:111:0.991:2	0/1:1,115:32:116:0.991:2	0/1:45,56:31:101:0.554:2	0/1:80,62:32:142:0.437:2	0/1:94,40:32:134:0.299:2	./.	./.	0/1:36,27:31:63:0.429:2
chr8	134488096	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:33:120:0.033:2
chr8	135521970	rs11778717	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,59:32:143:0.413:2	0/1:39,41:33:80:0.513:2	./.	./.
chr8	135524797	rs3739429	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:34,37:31:71:0.521:2	0/1:34,23:31:57:0.404:2	./.	./.	./.	./.	./.	./.	./.	0/1:44,45:30:89:0.506:2	./.
chr8	135600556	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.
chr8	135612595	rs894343	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,8:28:22:0.364:2	0/1:13,10:27:23:0.435:2	0/1:0,5:29:5:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,35:27:35:1.00:2	0/1:13,17:29:30:0.567:2	0/1:10,17:28:27:0.630:2	0/1:0,35:29:35:1.00:2	./.	0/1:19,5:29:24:0.208:2	0/1:23,23:26:46:0.500:2
chr8	135612745	rs894344	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,80:30:145:0.552:2	0/1:57,38:30:95:0.400:2	0/1:0,18:29:18:1.00:2	0/1:96,67:29:163:0.411:2	0/1:0,126:29:126:1.00:2	./.	0/1:104,84:30:188:0.447:2	./.	./.	0/1:87,68:30:155:0.439:2	0/1:108,77:29:185:0.416:2
chr8	135613947	rs35003767	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,6:33:93:0.065:2	./.	./.	./.
chr8	135614015	rs145169577	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,29:31:57:0.509:2	./.	./.	./.	./.	./.	./.
chr8	135614705	rs3739423	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,28:28:71:0.400:2	0/1:23,23:27:46:0.500:2	0/1:0,8:29:8:1.00:2	0/1:1,78:29:79:0.987:2	0/1:0,101:28:101:1.00:2	0/1:1,85:29:87:0.988:2	0/1:44,69:29:113:0.611:2	0/1:0,101:29:101:1.00:2	./.	0/1:49,35:28:84:0.417:2	0/1:0,68:28:68:1.00:2
chr8	135614972	rs3739422	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,8:33:21:0.381:2	./.	0/1:106,85:31:191:0.445:2	./.	./.	./.	./.	0/1:73,58:32:131:0.443:2	./.
chr8	135649848	rs12541381	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:33:12:0.500:2	./.	./.	0/1:2,116:32:118:0.983:2	./.	0/1:73,54:31:127:0.425:2	./.	0/1:54,47:32:101:0.465:2	0/1:52,44:32:96:0.458:2
chr8	135649954	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,6:33:75:0.080:2	./.	./.	./.	./.
chr8	135725089	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2
chr8	136594196	rs371959010	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,17:30:45:0.378:2	./.	./.	./.	./.	./.	./.	./.
chr8	136659232	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,4:33:113:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr8	139144914	rs2280848	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,77:32:151:0.510:2	./.	./.	0/1:36,47:32:83:0.566:2	./.
chr8	139149406	rs6577876	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,68:31:68:1.00:2	0/1:1,26:31:27:0.963:2	./.	./.	./.	0/1:31,36:31:67:0.537:2	0/1:53,31:30:84:0.369:2	0/1:1,60:30:61:0.984:2	0/1:38,32:32:70:0.457:2	0/1:52,28:30:80:0.350:2	0/1:52,39:31:91:0.429:2
chr8	139164192	rs3750306	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,26:32:40:0.650:2	0/1:30,32:32:62:0.516:2	./.	./.	0/1:25,39:34:64:0.609:2	./.	./.
chr8	139164570	rs3750307	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,18:31:49:0.367:2	./.	0/1:0,70:32:70:1.00:2	./.	0/1:35,16:32:51:0.314:2	0/1:31,31:33:62:0.500:2	./.
chr8	139165068	rs3763590	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,24:29:48:0.500:2	0/1:36,24:29:60:0.400:2	./.	./.	0/1:27,34:30:61:0.557:2	./.	./.
chr8	139165239	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,5:28:187:0.027:2	./.	./.	./.	./.	./.
chr8	139165272	rs7835712	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,124:29:125:0.992:2	0/1:0,71:29:71:1.00:2	0/1:10,12:31:22:0.545:2	./.	0/1:1,101:30:102:0.990:2	0/1:0,122:30:122:1.00:2	0/1:0,86:29:86:1.00:2	0/1:0,115:29:115:1.00:2	0/1:0,105:31:105:1.00:2	0/1:0,144:30:144:1.00:2	0/1:76,78:29:154:0.506:2
chr8	139165273	rs13280444	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,12:31:22:0.545:2	./.	0/1:55,49:31:104:0.471:2	0/1:69,55:32:124:0.444:2	./.	./.	0/1:57,48:32:105:0.457:2	./.	./.
chr8	139165289	rs7835830	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,113:32:114:0.991:2	0/1:0,73:32:73:1.00:2	0/1:9,12:32:21:0.571:2	./.	0/1:1,82:31:83:0.988:2	0/1:0,105:31:105:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,105:32:105:1.00:2	0/1:69,57:33:126:0.452:2
chr8	139263124	rs184738153	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,29:30:59:0.492:2	0/1:21,17:30:38:0.447:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	139626176	rs7000261	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:32:53:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,58:33:58:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,47:33:47:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,51:34:51:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,71:33:71:1.00:2
chr8	139631689	rs62530042	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,82:30:186:0.441:2	./.	./.	./.	./.
chr8	139635975	rs148437683	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,10:31:33:0.303:2	./.	./.
chr8	139642974	rs4131277	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,21:31:33:0.636:2	./.	./.	./.	./.
chr8	139647262	rs10091563	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:32:49:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,7:31:7:1.00:2	0/1:46,37:31:83:0.446:2	0/1:0,45:30:45:1.00:2	0/1:2,35:31:37:0.946:2	0/1:30,19:31:49:0.388:2	0/1:26,28:30:54:0.519:2	0/1:0,52:32:52:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,77:30:77:1.00:2
chr8	139668120	rs73445463	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,19:31:51:0.373:2	0/1:42,45:30:87:0.517:2	./.	./.	./.
chr8	139672671	rs3935045	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:30:74:1.00:2	0/1:0,48:29:48:1.00:2	0/1:0,13:29:13:1.00:2	0/1:32,38:30:70:0.543:2	0/1:0,47:29:47:1.00:2	0/1:0,60:29:60:1.00:2	0/1:38,28:29:66:0.424:2	./.	0/1:42,38:30:80:0.475:2	0/1:0,71:29:71:1.00:2	0/1:0,91:29:91:1.00:2
chr8	139697478	rs9644500	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,55:30:56:0.982:2	0/1:0,24:30:24:1.00:2	0/1:0,5:29:5:1.00:2	0/1:59,31:30:90:0.344:2	0/1:1,31:30:32:0.969:2	0/1:2,59:30:61:0.967:2	0/1:29,24:30:53:0.453:2	./.	./.	0/1:0,61:30:61:1.00:2	0/1:0,81:29:81:1.00:2
chr8	139701209	rs4909444	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,32:31:85:0.376:2	./.	./.	0/1:53,45:31:98:0.459:2	0/1:39,45:31:84:0.536:2	0/1:1,95:31:96:0.990:2	./.	./.
chr8	139712323	rs4909835	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:28:26:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,40:29:40:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,25:28:25:1.00:2	0/1:0,26:30:26:1.00:2	0/1:1,24:29:25:0.960:2	0/1:0,41:30:41:1.00:2	0/1:0,26:28:26:1.00:2
chr8	139712346	rs4909836	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,26:33:49:0.531:2	./.	./.	./.	./.	./.	./.	./.
chr8	139712355	rs77613350	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,16:32:31:0.516:2	./.	./.	./.
chr8	139734462	rs12678237	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:32:33:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,6:35:6:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,33:34:33:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,60:33:60:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,62:33:62:1.00:2
chr8	139736933	rs10112806	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,41:31:45:0.911:2	0/1:16,9:31:25:0.360:2	./.	0/1:20,26:31:46:0.565:2	0/1:1,43:31:44:0.977:2	0/1:0,21:32:22:1.00:2	0/1:18,17:32:35:0.486:2	./.
chr8	139749799	rs10111520	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:26,42:32:69:0.618:2	0/1:19,14:31:33:0.424:2	./.	0/1:33,29:31:62:0.468:2	./.	./.	./.	./.	./.	./.	./.
chr8	139768085	rs7825723	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:32:32:1.00:2	0/1:0,20:32:20:1.00:2	0/1:1,2:31:3:0.667:2	0/1:23,11:31:34:0.324:2	0/1:0,34:31:34:1.00:2	./.	0/1:0,52:31:52:1.00:2	0/1:25,30:31:55:0.545:2	0/1:0,43:32:43:1.00:2	./.	0/1:16,24:31:40:0.600:2
chr8	139772480	rs73437386	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,44:30:82:0.537:2	./.	./.	./.	./.	./.	./.	0/1:34,32:29:68:0.485:2
chr8	139809111	rs11992887	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,13:31:47:0.277:2	./.	0/1:51,26:32:77:0.338:2	0/1:1,49:31:50:0.980:2	./.
chr8	139824057	rs10101430	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,17:31:46:0.370:2	0/1:10,3:31:13:0.231:2	./.	0/1:2,81:31:83:0.976:2	0/1:47,40:31:87:0.460:2	0/1:0,85:31:85:1.00:2	0/1:54,30:32:84:0.357:2	0/1:3,103:31:106:0.972:2	./.	./.	0/1:54,26:32:80:0.325:2
chr8	139838912	rs2292927	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,59:30:61:0.967:2	0/1:0,53:30:53:1.00:2	0/1:10,6:31:16:0.375:2	0/1:0,117:30:117:1.00:2	0/1:74,47:30:121:0.388:2	0/1:0,126:30:126:1.00:2	0/1:0,88:30:88:1.00:2	0/1:0,145:30:145:1.00:2	./.	0/1:0,84:31:84:1.00:2	./.
chr8	140630990	rs2615374	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,39:28:39:1.00:2	0/1:0,31:28:31:1.00:2	./.	0/1:0,61:28:61:1.00:2	0/1:50,27:28:77:0.351:2	0/1:0,59:28:59:1.00:2	0/1:3,68:28:71:0.958:2	0/1:1,77:28:79:0.987:2	0/1:0,52:28:52:1.00:2	0/1:16,31:28:47:0.660:2	0/1:33,33:27:66:0.500:2
chr8	141231567	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,4:30:97:0.041:2	./.	./.	./.	./.	./.	./.
chr8	141263015	rs11166965	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,9:32:23:0.391:2	./.	./.	0/1:13,15:31:28:0.536:2	./.	./.	./.
chr8	141297819	rs117685875	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,12:30:21:0.571:2	./.	./.	./.	./.	./.	./.	./.
chr8	141310644	rs12549048	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:58,51:32:109:0.468:2	0/1:43,24:32:67:0.358:2	./.	0/1:59,52:31:111:0.468:2	./.	0/1:72,28:31:101:0.280:2	0/1:51,35:31:87:0.407:2	./.	./.	0/1:59,44:31:103:0.427:2	./.
chr8	141445217	rs141441030	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,39:31:80:0.488:2	0/1:23,21:32:44:0.477:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	141460918	rs57593250	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:30,15:32:45:0.333:2	0/1:7,12:33:19:0.632:2	./.	0/1:3,32:32:35:0.914:2	./.	0/1:35,20:29:55:0.364:2	./.	./.	./.	./.	./.
chr8	141461059	rs115986561	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,32:31:55:0.582:2
chr8	141461062	rs3735803	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,15:30:15:1.00:2	./.	./.	./.	./.	0/1:35,24:30:59:0.407:2	0/1:0,38:32:38:1.00:2	0/1:19,22:31:41:0.537:2	./.
chr8	141461074	rs61739560	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:16,24:32:40:0.600:2	0/1:8,18:31:26:0.692:2	./.	0/1:1,75:32:76:0.987:2	./.	0/1:37,29:31:66:0.439:2	./.	./.	./.	./.	./.
chr8	141461116	rs34457678	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:18,26:31:44:0.591:2	0/1:8,20:30:28:0.714:2	./.	0/1:2,66:30:69:0.971:2	./.	0/1:30,28:30:58:0.483:2	./.	./.	./.	./.	./.
chr8	141461185	rs3735802	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,29:30:51:0.569:2	0/1:12,16:29:28:0.571:2	0/1:0,5:31:5:1.00:2	0/1:0,61:29:61:1.00:2	./.	0/1:37,40:29:77:0.519:2	./.	0/1:34,34:29:68:0.500:2	0/1:0,49:30:49:1.00:2	0/1:18,18:29:36:0.500:2	0/1:24,28:28:52:0.538:2
chr8	141461266	rs3735801	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,41:28:83:0.494:2	0/1:17,19:29:36:0.528:2	0/1:0,9:31:9:1.00:2	0/1:0,87:29:87:1.00:2	./.	0/1:53,50:29:104:0.485:2	./.	0/1:65,61:29:127:0.484:2	0/1:0,106:29:106:1.00:2	0/1:52,24:29:76:0.316:2	0/1:46,41:28:87:0.471:2
chr8	141461333	rs147182402	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,37:32:78:0.474:2	./.	./.	./.
chr8	141461455	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,3:31:23:0.130:2	./.	./.
chr8	141525224	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:32:73:0.055:2	./.	./.	./.	./.
chr8	141525327	rs2231524	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,13:29:36:0.361:2	./.	0/1:24,33:31:57:0.579:2	./.	./.
chr8	141551368	rs113224509	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,38:31:75:0.507:2
chr8	141551407	rs2293939	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:30:10:0.400:2	./.	0/1:40,50:30:90:0.556:2	0/1:47,27:29:74:0.365:2	0/1:21,37:31:58:0.638:2	./.	0/1:31,25:30:56:0.446:2	./.	0/1:0,51:31:51:1.00:2
chr8	141559358	rs2292781	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,30:31:52:0.577:2	0/1:12,23:33:35:0.657:2	0/1:3,4:33:7:0.571:2	0/1:1,110:32:111:0.991:2	0/1:29,51:32:80:0.638:2	./.	./.	./.	0/1:45,61:32:106:0.575:2	0/1:30,20:33:50:0.400:2	./.
chr8	141566311	rs2271738	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,42:31:104:0.404:2	0/1:37,28:31:65:0.431:2	0/1:10,11:29:21:0.524:2	0/1:1,169:31:170:0.994:2	0/1:65,78:31:143:0.545:2	./.	./.	./.	0/1:96,68:32:164:0.415:2	0/1:61,75:31:136:0.551:2	0/1:84,87:31:171:0.509:2
chr8	141568622	rs2292778	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:31:66:1.00:2	0/1:0,34:31:34:1.00:2	0/1:16,6:31:22:0.273:2	0/1:0,94:31:94:1.00:2	0/1:84,56:30:140:0.400:2	./.	0/1:92,68:30:160:0.425:2	0/1:69,71:31:140:0.507:2	0/1:53,48:31:101:0.475:2	0/1:48,34:30:82:0.415:2	./.
chr8	141595263	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:35:53:0.075:2	./.	./.	./.	./.
chr8	141840645	rs4246127	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:33:46:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,35:32:35:1.00:2	0/1:27,6:33:33:0.182:2	./.	0/1:17,13:32:30:0.433:2	0/1:0,41:32:41:1.00:2	0/1:43,22:33:65:0.338:2	0/1:23,12:32:35:0.343:2	./.
chr8	141889623	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.	./.	./.
chr8	142154291	rs307761	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.	./.	./.	0/1:29,26:31:55:0.473:2	./.	./.
chr8	142161032	rs441914	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,22:30:42:0.524:2	./.	./.
chr8	142161873	rs2304284	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,11:31:18:0.611:2	./.	./.	./.	./.	./.	0/1:81,59:33:140:0.421:2	./.	./.
chr8	142161888	rs2304283	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,10:31:15:0.667:2	./.	./.	./.	./.	./.	0/1:80,56:32:136:0.412:2	./.	./.
chr8	142170884	rs2289001	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,51:31:123:0.415:2	0/1:46,36:31:82:0.439:2	0/1:15,13:30:28:0.464:2	0/1:88,82:29:170:0.482:2	0/1:98,69:30:167:0.413:2	./.	./.	./.	./.	0/1:107,74:31:181:0.409:2	./.
chr8	142200467	rs1045303	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,35:30:79:0.443:2	0/1:60,50:30:110:0.455:2	0/1:48,46:31:94:0.489:2	0/1:47,32:30:79:0.405:2	./.	./.	0/1:31,25:32:56:0.446:2	./.
chr8	142204326	rs1045248	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,31:31:66:0.470:2	0/1:31,33:32:64:0.516:2	0/1:32,33:32:65:0.508:2	0/1:39,37:31:76:0.487:2	0/1:80,5:32:85:0.059:2	./.	0/1:0,40:32:40:1.00:2	0/1:23,24:32:47:0.511:2
chr8	142221731	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,11:10:40:0.275:2	./.	./.	./.	./.	./.	./.
chr8	142222374	rs7017848	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,4:29:11:0.364:2	0/1:68,30:28:98:0.306:2	0/1:39,14:29:53:0.264:2	0/1:35,36:29:71:0.507:2	0/1:41,13:29:54:0.241:2	./.	0/1:51,48:28:99:0.485:2	0/1:0,48:28:48:1.00:2	0/1:31,32:28:63:0.508:2
chr8	142222445	rs3739238	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,8:29:18:0.444:2	0/1:70,43:30:113:0.381:2	0/1:61,36:30:97:0.371:2	0/1:42,54:29:96:0.563:2	0/1:57,37:30:94:0.394:2	./.	0/1:52,60:30:112:0.536:2	0/1:0,63:30:63:1.00:2	0/1:41,45:30:86:0.523:2
chr8	142225961	rs140681246	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,5:33:15:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	142225990	rs2288998	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:30:13:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	142228149	rs12679446	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,19:32:37:0.514:2	./.	./.	0/1:15,14:32:29:0.483:2	./.	./.
chr8	142228196	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:29:56:0.071:2	./.	./.	./.	./.	./.
chr8	142228686	rs3739237	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,23:30:68:0.338:2	./.	./.	0/1:27,24:31:51:0.471:2	./.	./.
chr8	142228809	rs753779	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,13:30:31:0.419:2	0/1:94,57:29:151:0.377:2	0/1:86,43:28:129:0.333:2	0/1:88,72:29:160:0.450:2	0/1:50,42:29:92:0.457:2	./.	0/1:55,33:30:88:0.375:2	0/1:0,78:28:78:1.00:2	0/1:31,26:29:57:0.456:2
chr8	142228909	rs753778	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,14:32:28:0.500:2	0/1:16,15:31:31:0.484:2	./.	0/1:5,7:32:12:0.583:2	./.	./.	0/1:0,16:29:16:1.00:2	0/1:8,14:32:22:0.636:2
chr8	142229834	rs2304280	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,59:32:121:0.488:2	./.	./.	0/1:38,44:32:82:0.537:2	./.	./.
chr8	142229891	rs2304279	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,7:31:20:0.350:2	0/1:44,35:31:79:0.443:2	0/1:39,23:31:62:0.371:2	0/1:32,18:32:50:0.360:2	0/1:35,8:32:43:0.186:2	./.	0/1:13,27:32:40:0.675:2	0/1:0,36:31:36:1.00:2	./.
chr8	142367087	rs34591516	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,23:33:46:0.500:2	0/1:19,20:32:39:0.513:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,19:31:38:0.500:2
chr8	142367246	rs36092215	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,9:31:10:0.900:2	./.	./.	./.	./.
chr8	142367335	rs10875472	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:33:3:1.00:2	0/1:0,3:30:3:1.00:2	./.	./.	0/1:0,3:32:3:1.00:2	./.	0/1:0,3:27:3:1.00:2	0/1:2,3:30:5:0.600:2	0/1:0,7:30:7:1.00:2	./.	./.
chr8	142367400	rs11167054	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:33:4:1.00:2	./.	./.	0/1:0,3:34:3:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,2:33:2:1.00:2	./.	./.
chr8	142367559	rs11785629	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,7:31:9:0.778:2	0/1:6,4:31:10:0.400:2	./.	0/1:12,9:30:21:0.429:2	0/1:15,26:30:41:0.634:2	0/1:0,23:30:23:1.00:2	0/1:0,27:30:27:1.00:2	0/1:9,20:30:29:0.690:2	0/1:5,8:30:13:0.615:2	0/1:0,21:31:21:1.00:2	0/1:6,8:32:14:0.571:2
chr8	142437934	rs7465654	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,11:31:22:0.500:2	0/1:17,14:29:31:0.452:2	./.	0/1:25,14:30:39:0.359:2	./.	0/1:0,37:32:37:1.00:2	./.	./.
chr8	142441117	rs145258592	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:30:65:0.062:2	./.	./.	./.	./.	./.
chr8	142446139	rs141065384	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,8:28:13:0.615:2
chr8	142446923	rs11782383	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:41,66:32:107:0.617:2	0/1:36,33:30:69:0.478:2	./.	./.	0/1:51,58:32:109:0.532:2	0/1:3,141:31:144:0.979:2	0/1:32,43:31:75:0.573:2	0/1:1,129:32:130:0.992:2	./.	0/1:43,20:30:63:0.317:2	./.
chr8	142446937	rs78448370	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,24:32:42:0.571:2
chr8	142458039	rs72685417	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:34,35:32:69:0.507:2	0/1:28,18:32:46:0.391:2	./.	0/1:47,69:31:117:0.595:2	./.	./.	./.	./.	0/1:0,110:33:110:1.00:2	./.	./.
chr8	142458053	rs6578185	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,39:32:82:0.476:2	0/1:25,26:32:51:0.510:2	0/1:0,11:31:11:1.00:2	0/1:82,59:32:141:0.418:2	0/1:1,100:32:101:0.990:2	0/1:2,103:32:105:0.981:2	0/1:72,48:32:120:0.400:2	0/1:0,94:32:94:1.00:2	./.	0/1:0,54:31:54:1.00:2	./.
chr8	142459738	rs76221513	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,13:31:13:1.00:2	./.	0/1:79,91:31:171:0.535:2	./.	./.	./.	./.	./.	./.
chr8	142459795	rs79669517	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:31:8:1.00:2	./.	0/1:24,32:30:56:0.571:2	./.	./.	./.	./.	./.	./.
chr8	142459814	rs7003306	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:31:36:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,14:30:14:1.00:2
chr8	142476529	rs7816228	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,72:29:192:0.375:2	./.	./.	./.	0/1:69,37:30:106:0.349:2
chr8	142476555	rs28439396	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:53,54:30:107:0.505:2	0/1:45,22:30:67:0.328:2	./.	0/1:92,84:29:176:0.477:2	./.	./.	./.	./.	0/1:0,138:30:138:1.00:2	./.	./.
chr8	142476611	rs28504323	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:73,42:32:115:0.365:2	0/1:45,19:32:64:0.297:2	./.	0/1:93,71:31:164:0.433:2	./.	./.	./.	./.	0/1:0,137:33:137:1.00:2	./.	./.
chr8	142477517	rs79788097	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:7,9:31:16:0.563:2	./.	./.	0/1:13,4:30:17:0.235:2	./.	./.	./.	./.	0/1:0,10:32:10:1.00:2	./.	./.
chr8	142477553	rs73713680	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.
chr8	142477563	rs73713681	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:27:3:1.00:2	./.	./.
chr8	142477588	rs74908317	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:28,5:33:33:0.152:2	./.	0/1:43,11:31:54:0.204:2	./.	./.	./.	./.	0/1:0,19:32:19:1.00:2	./.	./.
chr8	142477592	rs76586547	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:25,3:34:28:0.107:2	0/1:28,9:32:37:0.243:2	./.	0/1:48,11:31:59:0.186:2	./.	./.	./.	./.	0/1:0,20:31:20:1.00:2	./.	./.
chr8	142477614	rs72685432	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:32,8:32:40:0.200:2	0/1:29,13:30:42:0.310:2	./.	0/1:58,24:31:82:0.293:2	./.	./.	./.	./.	0/1:0,50:31:50:1.00:2	./.	./.
chr8	142486137	rs200713224	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,41:29:65:0.631:2	./.
chr8	142487538	rs74526628	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,40:32:103:0.388:2	./.	./.	./.	./.	./.	./.
chr8	142488837	rs12547980	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:18,25:30:43:0.581:2	0/1:6,8:31:14:0.571:2	./.	0/1:32,17:28:49:0.347:2	./.	0/1:30,21:30:51:0.412:2	0/1:38,19:30:57:0.333:2	./.	0/1:0,54:31:54:1.00:2	./.	0/1:17,18:30:35:0.514:2
chr8	142489410	rs2748418	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,16:31:50:0.320:2	0/1:21,14:30:35:0.400:2	./.	0/1:35,28:32:63:0.444:2	0/1:36,23:31:59:0.390:2	0/1:33,18:30:51:0.353:2	0/1:25,26:32:51:0.510:2	0/1:44,36:32:80:0.450:2	./.	0/1:0,35:31:35:1.00:2	./.
chr8	142490079	rs2613641	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:31:71:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,92:31:92:1.00:2	0/1:0,97:31:97:1.00:2	0/1:0,92:30:92:1.00:2	0/1:0,104:31:104:1.00:2	0/1:3,129:32:132:0.977:2	0/1:0,108:31:108:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,104:31:104:1.00:2
chr8	142490120	rs2748416	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:32:60:1.00:2	0/1:0,42:32:42:1.00:2	0/1:3,11:32:14:0.786:2	0/1:0,70:31:70:1.00:2	0/1:47,35:31:82:0.427:2	0/1:0,80:31:80:1.00:2	0/1:1,71:31:72:0.986:2	0/1:2,92:31:94:0.979:2	0/1:0,86:32:86:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,81:32:81:1.00:2
chr8	142490447	rs79609073	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:31:15:0.600:2	./.	0/1:74,69:30:143:0.483:2	./.	./.	./.	./.	./.	./.
chr8	142500315	rs180740682	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,9:32:11:0.818:2
chr8	142500345	rs75295956	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:31:7:0.571:2
chr8	142505038	rs6578193	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,23:32:23:1.00:2	0/1:7,7:32:14:0.500:2	0/1:0,29:33:29:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,26:33:26:1.00:2	./.	0/1:0,12:31:12:1.00:2	0/1:0,28:33:28:1.00:2
chr8	142505578	rs2748404	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,14:32:26:0.538:2	0/1:0,166:33:166:1.00:2	0/1:105,89:32:194:0.459:2	0/1:1,187:32:188:0.995:2	0/1:4,189:33:193:0.979:2	0/1:92,98:33:190:0.516:2	./.	0/1:0,139:33:139:1.00:2	0/1:0,147:33:147:1.00:2
chr8	142506436	rs78443189	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,91:32:193:0.472:2	0/1:108,87:32:195:0.446:2	./.	./.	./.	./.
chr8	142506461	rs2613637	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,22:33:34:0.647:2	0/1:6,179:33:185:0.968:2	0/1:105,89:32:194:0.459:2	0/1:1,180:32:181:0.994:2	0/1:4,178:33:182:0.978:2	0/1:110,80:33:190:0.421:2	./.	0/1:0,189:32:189:1.00:2	0/1:0,164:32:164:1.00:2
chr8	142506570	rs75683128	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,9:30:31:0.290:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	142517222	rs2748421	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,17:31:60:0.283:2	0/1:40,17:32:57:0.298:2	0/1:0,42:32:42:1.00:2	0/1:43,21:32:64:0.328:2	0/1:3,51:32:54:0.944:2	./.	0/1:0,43:31:43:1.00:2	./.
chr8	142517227	rs2613648	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,17:31:60:0.283:2	0/1:45,18:30:63:0.286:2	0/1:0,47:32:47:1.00:2	0/1:44,23:32:67:0.343:2	0/1:3,53:32:56:0.946:2	./.	0/1:0,47:32:47:1.00:2	./.
chr8	143413136	rs10435683	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:31:11:0.727:2	./.	./.	./.	./.	0/1:85,50:31:136:0.370:2	0/1:46,49:32:95:0.516:2	./.	0/1:34,48:31:82:0.585:2
chr8	143425720	rs10100935	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:27:8:0.375:2	./.	./.	./.	./.	0/1:44,26:26:70:0.371:2	0/1:32,39:28:71:0.549:2	./.	0/1:22,26:27:48:0.542:2
chr8	143427178	rs33970858	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,66:32:152:0.434:2	./.	./.
chr8	143436006	rs117184426	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,14:30:32:0.438:2	0/1:2,3:27:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	143436034	rs7814359	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,10:34:19:0.526:2	./.	./.
chr8	143603418	rs7460600	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,17:27:17:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,43:28:43:1.00:2	0/1:0,56:26:56:1.00:2	0/1:0,40:28:40:1.00:2	0/1:0,35:25:35:1.00:2	0/1:0,33:25:33:1.00:2	0/1:0,36:28:36:1.00:2	0/1:0,29:25:29:1.00:2	0/1:0,22:26:22:1.00:2
chr8	143605650	rs112471383	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,14:31:28:0.500:2	./.	0/1:11,5:32:16:0.313:2	./.	./.	./.	./.
chr8	143623459	rs34364916	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,22:30:47:0.468:2	0/1:13,15:32:28:0.536:2	./.	./.	./.	./.	./.	./.	0/1:25,25:33:50:0.500:2	0/1:20,20:31:40:0.500:2	./.
chr8	143694775	rs28686812	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,13:30:24:0.542:2	0/1:4,7:32:11:0.636:2	./.	0/1:1,25:32:26:0.962:2	0/1:0,10:30:10:1.00:2	0/1:11,10:32:21:0.476:2	0/1:6,3:31:9:0.333:2	0/1:0,14:30:14:1.00:2	0/1:16,11:32:27:0.407:2	0/1:7,5:32:12:0.417:2	0/1:4,3:23:7:0.429:2
chr8	143695144	rs2234911	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.
chr8	143695522	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.
chr8	143740311	rs117839538	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,33:32:72:0.458:2	./.	./.	./.	./.	./.	0/1:32,37:32:69:0.536:2
chr8	143745949	rs147803227	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,13:30:18:0.722:2	./.	./.	./.	./.	./.
chr8	143746050	rs2976399	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,14:31:14:1.00:2	0/1:0,11:33:11:1.00:2	./.	0/1:0,16:33:16:1.00:2	0/1:2,8:32:10:0.800:2	0/1:7,6:33:13:0.462:2	0/1:5,8:33:13:0.615:2	0/1:0,18:32:18:1.00:2	./.	./.	./.
chr8	143746069	rs3735999	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,12:27:13:0.923:2	0/1:0,7:28:7:1.00:2	./.	0/1:0,14:30:14:1.00:2	0/1:0,8:29:8:1.00:2	0/1:8,3:30:11:0.273:2	0/1:4,8:31:12:0.667:2	0/1:0,8:30:8:1.00:2	./.	./.	./.
chr8	143746365	rs3802234	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,27:30:62:0.435:2	./.	./.	./.	./.	./.	0/1:46,34:30:80:0.425:2
chr8	143746416	rs754957	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,41:30:42:0.976:2	0/1:0,28:29:28:1.00:2	./.	0/1:1,53:29:54:0.981:2	0/1:1,42:29:43:0.977:2	0/1:25,23:28:48:0.479:2	0/1:28,20:30:48:0.417:2	0/1:0,66:29:66:1.00:2	./.	0/1:25,26:29:51:0.510:2	0/1:42,32:29:74:0.432:2
chr8	143746701	rs3802232	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,34:29:34:1.00:2	0/1:0,23:27:23:1.00:2	./.	0/1:0,36:29:36:1.00:2	0/1:1,39:28:40:0.975:2	0/1:42,31:28:73:0.425:2	0/1:22,35:30:57:0.614:2	0/1:0,57:29:57:1.00:2	./.	0/1:20,15:28:35:0.429:2	0/1:25,16:30:41:0.390:2
chr8	143747097	rs34800931	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,28:29:56:0.500:2	./.	./.	./.	./.	./.	0/1:15,24:30:39:0.615:2
chr8	143747271	rs2978973	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,21:28:21:1.00:2	0/1:0,25:29:25:1.00:2	./.	0/1:0,30:28:30:1.00:2	0/1:23,22:26:45:0.489:2	0/1:29,22:28:51:0.431:2	0/1:29,22:27:51:0.431:2	0/1:1,35:27:36:0.972:2	./.	0/1:11,18:27:29:0.621:2	./.
chr8	143747389	rs34288113	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,49:31:96:0.510:2	./.	./.	./.	./.	./.	0/1:23,29:32:52:0.558:2
chr8	143747752	rs6997771	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,43:32:44:0.977:2	0/1:0,19:32:19:1.00:2	./.	0/1:1,48:32:49:0.980:2	0/1:0,44:32:44:1.00:2	0/1:27,27:32:54:0.500:2	0/1:16,36:32:52:0.692:2	0/1:0,49:32:49:1.00:2	./.	0/1:18,16:33:34:0.471:2	0/1:28,32:32:60:0.533:2
chr8	143761931	rs2294008	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,62:30:136:0.459:2	./.	0/1:86,74:30:160:0.463:2	0/1:83,73:32:156:0.468:2	0/1:104,84:32:188:0.447:2	./.	./.	0/1:0,101:32:101:1.00:2
chr8	143763490	rs2978982	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,7:26:21:0.333:2	./.	0/1:19,21:27:40:0.525:2	0/1:13,8:24:21:0.381:2	0/1:6,16:27:22:0.727:2	./.	./.	0/1:0,8:25:8:1.00:2
chr8	143763531	rs138377917	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:29:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	143763547	rs1045531	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,10:29:15:0.667:2	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2
chr8	143782044	rs2585174	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:32:23:1.00:2	0/1:0,14:32:14:1.00:2	0/1:14,5:33:19:0.263:2	0/1:38,19:32:57:0.333:2	0/1:25,36:31:61:0.590:2	0/1:27,26:32:53:0.491:2	0/1:27,18:33:45:0.400:2	./.	0/1:16,18:33:34:0.529:2	./.	./.
chr8	143783129	rs145529778	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:29:77:0.052:2	./.	./.	./.	./.	./.
chr8	143808951	rs2585138	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,2:30:2:1.00:2	0/1:0,2:32:2:1.00:2	./.	0/1:1,3:28:4:0.750:2	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.
chr8	143832577	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:30:51:0.078:2	./.	./.
chr8	143833850	rs11775636	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,35:29:59:0.593:2	0/1:15,30:29:45:0.667:2	./.	./.	0/1:12,36:29:48:0.750:2	./.	0/1:11,33:29:44:0.750:2	./.
chr8	143833856	rs11778314	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,34:31:49:0.694:2	0/1:9,20:31:29:0.690:2	./.	./.	0/1:10,34:31:44:0.773:2	./.	0/1:9,30:31:39:0.769:2	./.
chr8	143856744	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:34:120:0.033:2	./.	./.
chr8	143867905	rs2572925	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,18:30:47:0.383:2	0/1:10,10:31:20:0.500:2	0/1:5,4:30:9:0.444:2	0/1:2,84:30:86:0.977:2	0/1:30,45:30:75:0.600:2	0/1:52,34:29:86:0.395:2	0/1:36,31:30:67:0.463:2	./.	0/1:35,44:31:80:0.557:2	./.	./.
chr8	143922620	rs3764795	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,77:31:182:0.423:2	./.	0/1:99,76:31:175:0.434:2	./.	./.	./.	./.
chr8	143928044	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:33:62:0.065:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	143956693	rs4541	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,29:30:68:0.426:2	./.	0/1:40,32:29:72:0.444:2	./.	./.	./.	./.
chr8	143956706	rs5293	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,7:32:57:0.125:2	0/1:24,4:32:28:0.143:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	143957163	rs6403	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,41:31:83:0.494:2	./.	0/1:23,38:32:61:0.623:2	./.	./.	./.	./.
chr8	143957738	rs34570566	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,68:33:126:0.540:2	0/1:42,48:32:90:0.533:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	143958154	rs34620645	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:169,6:30:175:0.034:2	./.	./.	0/1:178,5:32:183:0.027:2	./.	./.	0/1:164,5:30:169:0.030:2	./.	0/1:177,8:33:185:0.043:2	0/1:147,7:31:154:0.045:2	./.
chr8	143958291	rs61751154	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:29:85:0.047:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	143958516	rs142163070	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:74,5:33:79:0.063:2	./.	./.	0/1:116,4:32:120:0.033:2	./.	./.	./.	./.	0/1:124,6:33:130:0.046:2	0/1:101,4:34:105:0.038:2	./.
chr8	143958530	rs199819891	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:85,4:33:89:0.045:2	./.	./.	./.	./.	./.	./.	./.	0/1:124,6:33:130:0.046:2	./.	./.
chr8	143958578	rs61751149	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:34:182:0.022:2	./.	./.	./.	./.
chr8	143960597	rs5283	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,64:30:119:0.538:2	./.	./.	0/1:77,57:30:134:0.425:2	./.	0/1:48,35:31:83:0.422:2	0/1:41,31:29:72:0.431:2	./.
chr8	143960600	rs9657022	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,58:30:119:0.487:2	./.	./.	./.	./.	./.
chr8	143961005	rs6410	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,73:33:187:0.390:2	0/1:103,41:31:144:0.285:2	./.	0/1:4,127:32:131:0.969:2	./.	0/1:81,64:33:146:0.441:2	0/1:67,70:31:137:0.511:2	./.
chr8	143961102	rs4534	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,56:32:108:0.519:2	./.	0/1:47,26:33:73:0.356:2	./.	./.	./.	./.
chr8	143994041	rs4545	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,36:31:83:0.434:2	./.	0/1:64,42:32:106:0.396:2	./.	./.	./.	./.
chr8	143994266	rs61757294	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,18:29:48:0.375:2	0/1:24,15:30:39:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	143994279	rs61757295	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,13:32:89:0.146:2	./.	0/1:87,11:33:98:0.112:2	./.	./.	./.	./.
chr8	143994702	rs4538	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,38:32:64:0.594:2	0/1:16,22:32:38:0.579:2	./.	0/1:23,23:31:46:0.500:2	0/1:12,28:31:40:0.700:2	./.	0/1:1,20:31:21:0.952:2	./.	0/1:30,24:33:54:0.444:2	0/1:12,17:31:29:0.586:2	./.
chr8	143995761	rs4536	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,164:33:164:1.00:2	0/1:0,124:32:124:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,184:32:184:1.00:2	0/1:89,101:32:190:0.532:2	0/1:0,192:32:192:1.00:2	0/1:108,86:32:194:0.443:2	0/1:1,193:32:194:0.995:2	0/1:0,176:33:176:1.00:2	0/1:0,185:33:185:1.00:2	0/1:1,181:32:182:0.995:2
chr8	143996539	rs4539	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:53,31:32:84:0.369:2	0/1:16,21:31:37:0.568:2	./.	0/1:70,57:32:127:0.449:2	./.	./.	0/1:59,52:32:112:0.468:2	./.	0/1:51,40:33:91:0.440:2	0/1:58,40:32:98:0.408:2	./.
chr8	143996553	rs4546	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:54,31:31:85:0.365:2	0/1:14,22:32:36:0.611:2	./.	0/1:63,64:30:127:0.504:2	./.	./.	0/1:56,52:30:108:0.481:2	./.	0/1:55,42:32:97:0.433:2	0/1:58,38:31:96:0.396:2	./.
chr8	144102747	rs11547127	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,56:30:113:0.496:2	./.	./.	./.
chr8	144124512	rs11136299	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:28:4:1.00:2	0/1:45,52:28:97:0.536:2	./.	./.	0/1:0,81:27:81:1.00:2	./.	0/1:36,47:30:83:0.566:2	./.	0/1:57,39:27:96:0.406:2
chr8	144124609	rs11136300	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,33:26:33:1.00:2	0/1:0,19:28:19:1.00:2	./.	0/1:25,31:29:56:0.554:2	0/1:1,44:30:45:0.978:2	0/1:2,67:29:69:0.971:2	./.	0/1:1,39:29:40:0.975:2	0/1:34,16:30:50:0.320:2	0/1:0,51:28:51:1.00:2	0/1:27,20:27:47:0.426:2
chr8	144239859	rs10109061	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:19,12:29:31:0.387:2	0/1:21,16:30:37:0.432:2	0/1:5,8:30:13:0.615:2	./.	0/1:0,45:29:45:1.00:2	0/1:51,28:30:79:0.354:2	0/1:1,67:29:68:0.985:2	0/1:36,34:29:70:0.486:2	./.	0/1:37,18:30:55:0.327:2	0/1:38,39:31:77:0.506:2
chr8	144240257	rs9694368	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,65:29:123:0.528:2	0/1:32,28:29:60:0.467:2	0/1:14,6:31:20:0.300:2	0/1:183,5:31:188:0.027:2	0/1:0,193:29:193:1.00:2	0/1:103,92:29:195:0.472:2	0/1:0,192:29:192:1.00:2	0/1:97,97:29:194:0.500:2	./.	0/1:67,57:29:124:0.460:2	0/1:73,64:30:137:0.467:2
chr8	144240263	rs372749060	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:34:60:0.067:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	144295154	rs61747644	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:19,36:31:55:0.655:2	0/1:20,8:31:28:0.286:2	./.	./.	./.	./.	./.	0/1:22,32:31:54:0.593:2	./.	./.	./.
chr8	144295183	rs11538389	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,16:31:27:0.593:2
chr8	144295782	rs11538388	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,25:30:51:0.490:2	0/1:18,7:32:25:0.280:2	0/1:0,3:31:3:1.00:2	0/1:54,40:30:94:0.426:2	0/1:1,116:30:117:0.991:2	0/1:0,86:30:86:1.00:2	0/1:2,86:30:88:0.977:2	0/1:51,58:31:109:0.532:2	0/1:61,37:31:98:0.378:2	0/1:0,57:30:57:1.00:2	./.
chr8	144332012	rs6558339	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,17:30:19:0.895:2	0/1:0,13:29:13:1.00:2	./.	0/1:0,30:29:30:1.00:2	0/1:10,12:29:22:0.545:2	0/1:20,16:30:36:0.444:2	0/1:0,22:30:22:1.00:2	0/1:8,23:28:31:0.742:2	0/1:14,23:30:37:0.622:2	0/1:0,21:28:21:1.00:2	0/1:0,17:28:17:1.00:2
chr8	144332082	rs11136275	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,24:30:24:1.00:2	0/1:0,19:29:19:1.00:2	./.	0/1:23,14:28:37:0.378:2	0/1:22,16:28:38:0.421:2	./.	0/1:0,34:30:34:1.00:2	0/1:16,25:29:41:0.610:2	0/1:14,16:31:30:0.533:2	0/1:0,31:29:31:1.00:2	0/1:0,23:30:23:1.00:2
chr8	144333315	rs4570175	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,24:32:49:0.490:2	0/1:20,10:32:30:0.333:2	0/1:7,6:33:13:0.462:2	0/1:48,36:31:84:0.429:2	./.	./.	0/1:0,113:32:113:1.00:2	./.	0/1:53,46:34:99:0.465:2	0/1:0,86:33:86:1.00:2	0/1:0,50:33:50:1.00:2
chr8	144333434	rs4348512	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:12,7:28:19:0.368:2	0/1:6,12:32:18:0.667:2	./.	0/1:15,13:32:28:0.464:2	./.	./.	0/1:0,24:32:24:1.00:2	./.	0/1:16,7:32:23:0.304:2	0/1:0,18:32:18:1.00:2	0/1:0,21:32:21:1.00:2
chr8	144351632	rs6558341	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:29:48:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,66:29:66:1.00:2	0/1:1,88:28:89:0.989:2	0/1:0,90:28:90:1.00:2	0/1:0,96:29:96:1.00:2	0/1:0,115:29:115:1.00:2	0/1:0,54:29:54:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,73:29:74:1.00:2
chr8	144358381	rs1056148	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:2,11:29:13:0.846:2	0/1:2,9:29:11:0.818:2	./.	0/1:12,12:30:24:0.500:2	./.	./.	0/1:0,25:29:25:1.00:2	./.	0/1:0,11:29:11:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,10:29:11:1.00:2
chr8	144358505	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,4:31:24:0.167:2	./.	./.
chr8	144378184	rs2235115	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:2,13:31:15:0.867:2	0/1:1,2:33:3:0.667:2	0/1:0,2:31:2:1.00:2	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.	0/1:1,18:33:19:0.947:2	0/1:0,4:30:4:1.00:2	0/1:0,10:32:10:1.00:2
chr8	144378868	rs7386259	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	144392368	rs2293925	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,14:28:29:0.483:2	0/1:13,3:28:16:0.188:2	0/1:3,5:31:8:0.625:2	0/1:15,16:30:31:0.516:2	./.	./.	0/1:0,75:29:76:1.00:2	./.	0/1:24,10:32:34:0.294:2	0/1:0,22:30:22:1.00:2	0/1:0,40:30:40:1.00:2
chr8	144403449	rs61631623	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,30:29:72:0.417:2	./.	./.	0/1:22,36:30:58:0.621:2	0/1:27,29:32:56:0.518:2	./.	./.
chr8	144403485	rs11544482	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:27,27:32:54:0.500:2	0/1:17,18:32:35:0.514:2	./.	0/1:33,20:32:53:0.377:2	./.	0/1:43,17:31:60:0.283:2	./.	./.	./.	./.	./.
chr8	144406705	rs11544484	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:48,27:30:75:0.360:2	0/1:23,14:31:37:0.378:2	./.	0/1:37,41:31:78:0.526:2	./.	0/1:48,45:30:93:0.484:2	./.	./.	./.	./.	./.
chr8	144407611	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:31:123:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	144413416	rs2450772	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,26:32:51:0.510:2	./.	./.	./.	0/1:32,24:31:56:0.429:2	./.	./.	./.
chr8	144457746	rs34876718	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,23:30:44:0.523:2	./.	./.	./.
chr8	144464689	rs367783234	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:34:38:0.105:2	./.	./.	./.	./.
chr8	144522387	rs2272754	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:31:9:0.444:2	0/1:30,25:30:55:0.455:2	0/1:59,42:29:101:0.416:2	0/1:37,38:29:75:0.507:2	./.	0/1:52,62:30:114:0.544:2	0/1:28,33:31:61:0.541:2	./.	./.
chr8	144522388	rs2272753	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:31:9:0.444:2	0/1:29,26:30:55:0.473:2	0/1:60,42:31:102:0.412:2	0/1:36,37:31:74:0.507:2	./.	0/1:52,62:31:114:0.544:2	0/1:28,33:32:61:0.541:2	./.	./.
chr8	144522457	rs36083358	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,22:29:38:0.579:2	./.	./.	./.	./.	./.	./.
chr8	144557739	rs71520524	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,14:32:32:0.438:2
chr8	144620183	rs4874147	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,14:30:36:0.389:2	0/1:19,7:30:26:0.269:2	0/1:0,5:29:5:1.00:2	0/1:1,66:30:68:0.985:2	0/1:0,38:29:38:1.00:2	./.	0/1:0,50:30:50:1.00:2	0/1:29,35:29:64:0.547:2	0/1:0,48:31:48:1.00:2	0/1:21,29:29:50:0.580:2	0/1:29,24:27:54:0.453:2
chr8	144620246	rs72691463	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,15:31:35:0.429:2	0/1:17,16:32:33:0.485:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	144620342	rs1318196	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,41:31:85:0.482:2	./.	./.	0/1:77,50:31:127:0.394:2	./.	0/1:50,44:32:94:0.468:2	./.	0/1:35,56:30:91:0.615:2
chr8	144620584	rs80351785	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,27:30:65:0.415:2	./.	./.	./.	./.
chr8	144620649	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,19:32:44:0.442:2	0/1:13,19:31:32:0.594:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	144620855	rs4873802	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,9:33:11:0.818:2	./.	./.	./.	./.
chr8	144620871	rs3750209	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:28:14:0.500:2	./.	./.	./.	./.	./.	./.	0/1:4,3:30:7:0.429:2
chr8	144621035	rs3750208	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,7:31:17:0.412:2	./.	./.	./.	./.	./.	./.	0/1:17,18:31:35:0.514:2
chr8	144621084	rs3750207	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,7:32:18:0.389:2	./.	./.	0/1:6,7:30:13:0.538:2	./.	0/1:14,10:29:24:0.417:2	./.	0/1:19,21:29:40:0.525:2
chr8	144621091	rs3750206	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,7:31:18:0.389:2	./.	./.	./.	./.	./.	./.	0/1:17,23:31:40:0.575:2
chr8	144621221	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:32:64:0.063:2	./.	./.	./.	./.
chr8	144623574	rs2242093	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,34:32:95:0.358:2	./.	./.	./.	0/1:42,29:32:72:0.408:2	./.	./.
chr8	144642815	rs11551200	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,31:28:72:0.431:2	0/1:18,22:31:40:0.550:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	144642854	rs11551202	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,51:31:108:0.472:2	./.	./.
chr8	144642881	rs112103340	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,78:30:131:0.595:2	./.	0/1:69,47:30:116:0.405:2	./.	./.	./.
chr8	144642932	rs62000422	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,31:30:43:0.721:2	./.	0/1:9,10:29:19:0.526:2	./.	./.	./.
chr8	144643603	rs2290414	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:28:9:0.556:2	./.	0/1:0,20:30:20:1.00:2	./.	0/1:14,10:30:24:0.417:2	0/1:4,14:30:18:0.778:2	./.	0/1:0,22:31:22:1.00:2
chr8	144644405	rs11551198	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,7:32:8:0.875:2	0/1:4,6:32:10:0.600:2	./.	0/1:0,6:31:6:1.00:2	./.	./.	./.	./.
chr8	144649802	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:32:78:0.051:2	./.	./.	./.	./.	./.
chr8	144649968	rs13255489	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,11:29:26:0.423:2	0/1:8,4:29:12:0.333:2	0/1:0,3:29:3:1.00:2	0/1:9,12:30:21:0.571:2	0/1:14,16:29:30:0.533:2	0/1:0,17:27:17:1.00:2	./.	0/1:0,20:30:20:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,10:29:10:1.00:2
chr8	144654249	rs10866911	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,19:31:19:1.00:2	0/1:43,51:30:94:0.543:2	0/1:2,96:31:98:0.980:2	./.	0/1:21,21:31:42:0.500:2	0/1:50,34:31:84:0.405:2	0/1:57,48:32:105:0.457:2	0/1:0,63:31:63:1.00:2	./.
chr8	144654255	rs4874153	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:28:77:1.00:2	0/1:0,47:28:47:1.00:2	0/1:0,20:29:20:1.00:2	0/1:1,90:28:91:0.989:2	0/1:0,101:28:101:1.00:2	0/1:0,64:29:64:1.00:2	0/1:0,43:27:43:1.00:2	0/1:0,83:29:83:1.00:2	0/1:60,48:29:109:0.444:2	0/1:0,65:28:65:1.00:2	0/1:0,42:27:43:1.00:2
chr8	144654594	rs4873803	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:29:3:1.00:2	0/1:9,9:30:18:0.500:2	0/1:0,6:30:6:1.00:2	./.	./.	./.	./.	0/1:0,11:29:11:1.00:2	./.
chr8	144654693	rs4873804	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,8:29:10:0.800:2	0/1:27,26:30:53:0.491:2	0/1:0,55:29:55:1.00:2	./.	0/1:20,18:30:38:0.474:2	0/1:43,16:28:59:0.271:2	0/1:36,25:31:61:0.410:2	0/1:0,25:29:25:1.00:2	./.
chr8	144657600	rs2290416	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,60:30:115:0.522:2	./.	./.	./.	./.	./.	./.	0/1:34,35:29:70:0.507:2
chr8	144657801	rs9771743	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,67:30:150:0.447:2	./.	./.
chr8	144658630	rs35975875	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,20:32:43:0.465:2	./.	./.	./.	./.	./.
chr8	144658711	rs872935	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,26:32:26:1.00:2	0/1:0,9:32:9:1.00:2	./.	0/1:16,23:32:39:0.590:2	0/1:0,36:32:36:1.00:2	./.	0/1:1,28:32:29:0.966:2	0/1:15,19:32:34:0.559:2	0/1:14,16:32:30:0.533:2	0/1:0,17:32:17:1.00:2	./.
chr8	144659440	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:31:41:0.098:2	./.	./.	./.
chr8	144660046	rs896954	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,20:32:45:0.455:2	./.	./.
chr8	144662230	rs10090485	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,34:32:71:0.479:2	./.	./.	./.	./.
chr8	144662353	rs1062391	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:31:43:1.00:2	0/1:3,42:31:45:0.933:2	0/1:5,6:32:11:0.545:2	0/1:39,37:32:76:0.487:2	0/1:0,84:32:84:1.00:2	./.	0/1:2,104:32:106:0.981:2	0/1:45,55:31:100:0.550:2	0/1:35,29:33:64:0.453:2	0/1:0,63:32:63:1.00:2	./.
chr8	144671244	rs4874160	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.
chr8	144671685	rs6985081	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,7:31:7:1.00:2	0/1:0,4:30:4:1.00:2	./.	0/1:0,13:32:13:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,12:34:12:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,2:32:2:1.00:2
chr8	144671922	rs3812448	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:31:23:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,7:31:7:1.00:2	0/1:29,15:30:44:0.341:2	0/1:0,38:29:39:1.00:2	0/1:17,16:30:33:0.485:2	0/1:0,37:30:37:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,45:31:45:1.00:2	0/1:36,3:33:39:0.077:2
chr8	144671956	rs3812447	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,23:29:35:0.657:2	./.	./.	./.	./.	./.	./.	0/1:12,5:29:17:0.294:2
chr8	144681630	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,6:33:39:0.154:2	./.	./.
chr8	144681714	rs58573550	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,8:31:22:0.381:2	./.	./.	./.	./.	./.	./.	0/1:1,4:33:5:0.800:2
chr8	144681777	rs10282929	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,9:31:9:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,3:30:3:1.00:2	0/1:7,23:30:30:0.767:2	0/1:0,19:31:19:1.00:2	./.	0/1:0,4:31:4:1.00:2	0/1:13,13:31:26:0.500:2	0/1:0,14:32:14:1.00:2	0/1:0,19:29:19:1.00:2	./.
chr8	144681838	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:33:47:0.085:2	./.	./.	./.	./.	./.
chr8	144688254	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,57:32:96:0.594:2	./.
chr8	144688736	rs2242090	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,22:32:68:0.324:2	0/1:25,22:31:47:0.468:2	0/1:15,3:32:18:0.167:2	0/1:67,81:31:148:0.547:2	0/1:0,126:30:126:1.00:2	./.	0/1:57,41:29:98:0.418:2	0/1:72,75:31:147:0.510:2	0/1:45,57:33:102:0.559:2	0/1:0,89:31:89:1.00:2	./.
chr8	144689146	rs2242089	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,60:31:106:0.566:2	0/1:30,25:31:55:0.455:2	./.	./.	./.	0/1:72,73:30:147:0.503:2	0/1:92,103:31:196:0.528:2	./.	./.	./.	0/1:64,66:31:130:0.508:2
chr8	144689289	rs11549789	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,40:31:71:0.563:2	./.	0/1:49,33:32:82:0.402:2	./.	./.	./.
chr8	144697041	rs1049832	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,25:28:43:0.581:2	0/1:20,18:30:38:0.474:2	./.	0/1:2,87:29:89:0.978:2	0/1:3,137:29:140:0.979:2	0/1:60,61:29:122:0.504:2	0/1:94,57:29:151:0.377:2	0/1:1,135:29:136:0.993:2	0/1:62,55:29:117:0.470:2	0/1:44,49:28:93:0.527:2	0/1:48,50:28:98:0.510:2
chr8	144732363	rs4875017	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,76:33:77:1.00:2
chr8	144732418	rs4874084	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:29:66:1.00:2	0/1:0,45:28:45:1.00:2	0/1:0,2:27:2:1.00:2	0/1:0,96:29:96:1.00:2	0/1:0,83:29:83:1.00:2	0/1:0,80:29:80:1.00:2	0/1:0,88:30:88:1.00:2	0/1:0,71:28:71:1.00:2	0/1:0,93:30:93:1.00:2	0/1:0,83:29:83:1.00:2	0/1:0,72:29:73:1.00:2
chr8	144732450	rs3750204	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,36:32:90:0.400:2	./.	0/1:60,47:33:107:0.439:2	0/1:76,43:32:119:0.361:2	0/1:59,52:32:111:0.468:2	./.
chr8	144733782	rs370741676	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,12:13:95:0.126:2	./.	./.	./.	0/1:82,11:14:94:0.118:2
chr8	144733805	rs12679735	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,46:32:90:0.511:2	./.	0/1:46,48:32:94:0.511:2	0/1:40,54:33:94:0.574:2	0/1:47,37:33:84:0.440:2	./.
chr8	144734329	rs141981344	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,86:29:192:0.448:2	./.	./.	./.
chr8	144734383	rs61473404	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,69:31:173:0.399:2	./.	0/1:106,76:32:182:0.418:2	./.	./.	./.
chr8	144734541	rs138712751	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,52:30:120:0.433:2	./.	./.	./.
chr8	144735347	rs921669	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,30:30:75:0.400:2	0/1:32,20:30:52:0.385:2	./.
chr8	144735459	rs146311362	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,15:30:43:0.349:2	./.	./.	./.	./.	./.	./.	./.
chr8	144735624	rs13259906	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,5:30:19:0.263:2	./.	0/1:15,10:30:25:0.400:2	./.	./.	./.	./.	./.
chr8	144775871	rs6987308	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:31:95:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,17:31:17:1.00:2	0/1:2,161:31:163:0.988:2	0/1:0,102:31:102:1.00:2	0/1:92,70:30:162:0.432:2	0/1:0,128:32:128:1.00:2	0/1:86,83:32:169:0.491:2	0/1:0,149:32:149:1.00:2	0/1:0,99:32:99:1.00:2	0/1:1,129:32:130:0.992:2
chr8	144776109	rs11786757	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,3:26:3:1.00:2	./.	0/1:0,2:31:2:1.00:2	0/1:0,6:28:6:1.00:2	0/1:0,4:22:4:1.00:2	0/1:0,4:28:4:1.00:2	0/1:0,3:29:3:1.00:2	0/1:0,3:27:3:1.00:2	./.	0/1:0,2:30:2:1.00:2	0/1:0,4:28:4:1.00:2
chr8	144789973	rs61731375	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	144798592	rs62524242	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,20:31:32:0.625:2	./.	./.
chr8	144800420	rs56186625	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,15:31:66:0.227:2	./.	./.	./.	./.	./.	./.
chr8	144801165	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,10:32:21:0.476:2	./.
chr8	144801243	rs12678428	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:32:30:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,14:32:14:1.00:2	0/1:30,35:33:65:0.538:2	0/1:34,44:31:78:0.564:2	0/1:0,67:32:67:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,76:32:77:1.00:2	0/1:28,22:34:50:0.440:2	0/1:0,40:33:40:1.00:2	0/1:0,21:31:21:1.00:2
chr8	144801641	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,4:26:50:0.080:2	./.	./.	./.	./.	./.	./.
chr8	144802451	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,14:32:28:0.500:2	./.
chr8	144802735	rs6420190	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,13:32:27:0.481:2	./.	./.	./.	./.	./.	./.
chr8	144802736	rs6420191	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,13:31:28:0.464:2	./.	./.	./.	./.	./.	./.
chr8	144803450	rs34410761	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,10:33:20:0.500:2	./.	./.
chr8	144808572	rs117987215	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,18:31:33:0.545:2	./.
chr8	144808747	rs11136321	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,5:32:5:1.00:2	0/1:0,2:32:2:1.00:2	./.	0/1:0,13:30:13:1.00:2	0/1:7,3:31:10:0.300:2	0/1:0,18:31:18:1.00:2	0/1:2,6:32:8:0.750:2	0/1:0,17:32:17:1.00:2	0/1:8,6:33:14:0.429:2	0/1:0,7:31:7:1.00:2	0/1:0,13:31:13:1.00:2
chr8	144808769	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,2:34:5:0.400:2	./.	./.	./.	./.	./.
chr8	144809804	rs13254035	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,4:31:4:1.00:2	0/1:0,2:28:2:1.00:2	./.	0/1:0,2:31:2:1.00:2	0/1:0,2:30:2:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.
chr8	144810322	rs28573699	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:29:7:0.429:2	./.	./.	./.	0/1:11,18:28:29:0.621:2	./.	./.	./.	./.	./.	./.
chr8	144811338	rs9969600	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:30:50:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,76:31:76:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,56:31:56:1.00:2
chr8	144873475	rs146664605	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,50:32:108:0.463:2	./.	./.	./.	./.	./.	./.
chr8	144874078	rs117338714	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,5:31:6:0.833:2	./.	./.	./.	0/1:0,6:32:6:1.00:2	./.	./.
chr8	144874957	rs72693351	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,9:30:17:0.529:2
chr8	144877265	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,3:30:22:0.136:2	./.	./.	./.	./.	./.
chr8	144885580	rs13281371	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,3:32:7:0.429:2	./.	0/1:0,4:30:4:1.00:2	0/1:0,4:30:4:1.00:2	./.	0/1:0,7:29:7:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,6:31:6:1.00:2	./.	0/1:0,5:29:5:1.00:2	./.
chr8	144886809	rs11542374	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,5:32:8:0.625:2
chr8	144888611	rs193014409	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,52:31:84:0.619:2	./.	./.	./.	./.
chr8	144889172	rs10866915	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,25:33:46:0.543:2	0/1:6,10:33:16:0.625:2	0/1:0,4:30:4:1.00:2	0/1:0,76:32:76:1.00:2	0/1:27,31:32:58:0.534:2	0/1:2,58:32:60:0.967:2	0/1:0,87:32:87:1.00:2	0/1:0,77:32:77:1.00:2	0/1:43,31:33:74:0.419:2	0/1:0,40:31:40:1.00:2	0/1:0,40:33:40:1.00:2
chr8	144889702	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:132,4:32:136:0.029:2	./.	./.	./.	./.	./.	./.
chr8	144890873	rs10098508	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:30:36:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,66:28:66:1.00:2	0/1:1,58:29:59:0.983:2	0/1:0,80:30:80:1.00:2	0/1:0,62:28:62:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,69:30:69:1.00:2	0/1:1,42:29:43:0.977:2	0/1:0,47:30:49:1.00:2
chr8	144890953	rs111919660	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,7:30:8:0.875:2	./.
chr8	144890968	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,11:31:24:0.458:2	./.	./.	./.	./.	./.	./.
chr8	144891768	rs118022661	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,16:27:32:0.500:2	0/1:12,23:29:36:0.657:2	./.	./.	./.	./.
chr8	144893084	rs6558394	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,14:32:31:0.452:2	0/1:13,5:33:18:0.278:2	0/1:0,5:31:5:1.00:2	0/1:0,43:30:43:1.00:2	./.	0/1:1,41:31:42:0.976:2	0/1:2,31:31:33:0.939:2	0/1:11,14:32:25:0.560:2	0/1:14,7:32:21:0.333:2	0/1:0,15:28:15:1.00:2	0/1:5,9:31:14:0.643:2
chr8	144894496	rs4875060	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,33:32:67:0.493:2	0/1:20,19:32:39:0.487:2	0/1:0,10:32:10:1.00:2	0/1:0,95:32:95:1.00:2	0/1:69,68:32:137:0.496:2	0/1:0,119:32:119:1.00:2	0/1:4,139:32:143:0.972:2	0/1:0,161:33:161:1.00:2	0/1:57,49:33:106:0.462:2	0/1:0,84:33:84:1.00:2	0/1:0,73:32:73:1.00:2
chr8	144895553	rs13251492	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,53:31:132:0.402:2	./.	./.	0/1:56,58:31:114:0.509:2	./.	./.	0/1:25,28:30:53:0.528:2
chr8	144895669	rs56748182	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:25,19:31:44:0.432:2	0/1:22,21:31:43:0.488:2	./.	./.	0/1:25,28:30:53:0.528:2	./.	./.	./.	0/1:30,27:31:57:0.474:2	./.	./.
chr8	144896015	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,19:30:50:0.380:2	./.	./.	./.	./.
chr8	144917880	rs72693365	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:14,15:32:29:0.517:2	0/1:0,6:32:6:1.00:2	./.	./.	0/1:8,21:32:29:0.724:2	./.	./.	./.	0/1:11,12:33:23:0.522:2	./.	./.
chr8	144917912	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,6:31:14:0.429:2	./.	./.	./.	./.
chr8	144940222	rs6990098	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,57:32:71:0.803:2	0/1:8,26:32:34:0.765:2	0/1:5,6:33:11:0.545:2	0/1:48,35:32:83:0.422:2	0/1:44,66:32:110:0.600:2	0/1:57,56:32:113:0.496:2	0/1:68,23:32:92:0.253:2	0/1:68,59:31:127:0.465:2	0/1:61,21:33:83:0.256:2	0/1:37,47:32:84:0.560:2	0/1:29,20:32:49:0.408:2
chr8	144940230	rs7005697	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,72:28:86:0.837:2	0/1:8,34:29:42:0.810:2	0/1:5,8:29:13:0.615:2	0/1:53,53:29:106:0.500:2	0/1:50,92:29:142:0.648:2	0/1:62,74:29:136:0.544:2	0/1:78,48:29:126:0.381:2	0/1:76,79:29:155:0.510:2	0/1:64,40:30:104:0.385:2	0/1:41,58:29:99:0.586:2	0/1:30,27:29:58:0.474:2
chr8	144940267	rs28441354	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,4:28:22:0.182:2	0/1:158,9:30:167:0.054:2	./.	0/1:142,19:29:162:0.118:2	0/1:135,26:29:162:0.161:2	0/1:161,9:30:170:0.053:2	0/1:150,6:29:156:0.038:2	0/1:150,6:29:156:0.038:2	0/1:86,15:31:102:0.149:2
chr8	144940281	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,12:32:130:0.093:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	144940290	rs201976887	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,5:30:154:0.032:2	./.	./.	0/1:81,12:31:95:0.129:2
chr8	144940300	rs4977191	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,63:29:112:0.563:2	0/1:15,30:31:45:0.667:2	0/1:6,15:29:21:0.714:2	0/1:62,77:29:139:0.554:2	0/1:35,100:30:135:0.741:2	0/1:55,68:30:123:0.553:2	0/1:55,66:30:123:0.545:2	0/1:36,76:31:112:0.679:2	0/1:59,57:30:116:0.491:2	0/1:59,65:30:124:0.524:2	0/1:28,56:29:84:0.667:2
chr8	144940331	rs200585601	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:30:47:0.085:2
chr8	144940378	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,3:30:24:0.125:2	./.	./.	./.	./.	./.	./.	./.
chr8	144940462	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:126,7:32:133:0.053:2	./.	./.	./.	./.	0/1:54,4:32:58:0.069:2	./.
chr8	144940474	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:112,6:29:118:0.051:2	./.	./.	./.	./.	0/1:47,4:30:51:0.078:2	./.
chr8	144940779	rs11781942	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:35,36:32:71:0.507:2	0/1:15,22:32:37:0.595:2	./.	./.	0/1:43,35:31:78:0.449:2	./.	./.	./.	0/1:42,49:33:91:0.538:2	0/1:34,28:32:62:0.452:2	./.
chr8	144941181	rs7839934	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,12:32:18:0.667:2	0/1:51,40:32:91:0.440:2	./.	0/1:1,111:32:112:0.991:2	0/1:0,128:31:128:1.00:2	./.	./.	./.	./.
chr8	144941419	rs12681478	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,27:32:64:0.422:2	0/1:18,22:33:40:0.550:2	0/1:3,8:31:11:0.727:2	0/1:40,37:31:77:0.481:2	./.	0/1:61,49:31:110:0.445:2	0/1:58,44:32:102:0.431:2	0/1:62,50:33:112:0.446:2	./.	0/1:47,40:33:87:0.460:2	./.
chr8	144941659	rs181215404	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,18:30:41:0.439:2
chr8	144942538	rs117131125	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,40:30:106:0.377:2	./.	./.	./.	./.	./.
chr8	144942589	rs149570635	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,41:32:107:0.383:2	./.	./.	./.
chr8	144942903	rs6558399	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,12:28:12:1.00:2	0/1:0,7:27:7:1.00:2	0/1:0,4:26:4:1.00:2	0/1:0,14:27:14:1.00:2	0/1:10,12:26:22:0.545:2	0/1:0,17:27:17:1.00:2	0/1:0,7:29:7:1.00:2	0/1:8,8:27:16:0.500:2	0/1:0,12:25:12:1.00:2	0/1:0,19:29:19:1.00:2	0/1:0,8:24:8:1.00:2
chr8	144943196	rs74777588	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,35:33:87:0.402:2	./.	./.	./.
chr8	144943726	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	144944161	rs35221054	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,14:31:14:1.00:2	0/1:0,114:32:114:1.00:2	0/1:58,54:32:112:0.482:2	0/1:0,138:32:138:1.00:2	0/1:4,102:32:106:0.962:2	./.	0/1:52,33:32:85:0.388:2	0/1:40,55:33:95:0.579:2	0/1:0,95:32:95:1.00:2
chr8	144944176	rs12542653	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,41:31:102:0.402:2	0/1:27,25:31:52:0.481:2	0/1:0,14:32:14:1.00:2	0/1:0,118:32:118:1.00:2	0/1:1,114:31:115:0.991:2	0/1:0,145:32:145:1.00:2	0/1:4,117:31:121:0.967:2	./.	0/1:0,93:33:93:1.00:2	0/1:0,95:33:95:1.00:2	0/1:0,86:32:86:1.00:2
chr8	144944226	rs116925616	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,38:32:90:0.422:2	0/1:33,20:32:53:0.377:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	144944638	rs56118826	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:5,3:33:8:0.375:2	./.	./.
chr8	144945191	rs12543389	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,17:31:38:0.447:2	0/1:9,10:33:19:0.526:2	./.	./.	./.	./.	./.	./.	0/1:38,23:32:61:0.377:2	0/1:21,28:32:49:0.571:2	./.
chr8	144945792	rs13255110	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,16:33:37:0.432:2	0/1:8,11:34:19:0.579:2	0/1:0,9:29:9:1.00:2	0/1:0,85:33:85:1.00:2	0/1:3,88:32:91:0.967:2	0/1:0,84:32:84:1.00:2	0/1:0,59:32:59:1.00:2	./.	0/1:0,65:32:65:1.00:2	0/1:0,39:32:41:1.00:2	0/1:0,38:32:38:1.00:2
chr8	144945829	rs368162575	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,18:32:35:0.514:2	0/1:4,11:30:15:0.733:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	144946252	rs11136330	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,9:31:21:0.429:2	0/1:4,5:32:9:0.556:2	0/1:0,4:32:4:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,21:31:21:1.00:2	0/1:3,21:31:24:0.875:2	./.	0/1:1,29:32:30:0.967:2	0/1:0,26:32:26:1.00:2	0/1:0,21:32:22:1.00:2
chr8	144946345	rs34753358	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,16:30:16:1.00:2	0/1:0,52:32:52:1.00:2	0/1:1,53:31:54:0.981:2	0/1:0,51:31:51:1.00:2	0/1:1,65:31:66:0.985:2	./.	0/1:21,33:33:54:0.611:2	0/1:21,18:31:39:0.462:2	0/1:0,41:32:41:1.00:2
chr8	144946818	rs13260439	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:29:2:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,31:29:31:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,27:30:27:1.00:2	./.	0/1:6,12:32:18:0.667:2	0/1:9,3:32:12:0.250:2	0/1:0,21:30:21:1.00:2
chr8	144991176	rs6558405	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:27:2:1.00:2	0/1:0,28:29:28:1.00:2	0/1:24,13:29:37:0.351:2	0/1:21,26:30:47:0.553:2	0/1:7,13:30:20:0.650:2	0/1:20,8:29:28:0.286:2	0/1:21,15:31:36:0.417:2	0/1:22,5:32:27:0.185:2	0/1:10,9:27:19:0.474:2
chr8	144992103	rs6558406	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,7:32:15:0.467:2	0/1:2,94:29:96:0.979:2	0/1:91,52:29:143:0.364:2	0/1:79,47:31:126:0.373:2	0/1:70,40:30:110:0.364:2	0/1:81,64:29:145:0.441:2	0/1:42,42:30:84:0.500:2	0/1:33,28:30:61:0.459:2	0/1:39,36:30:75:0.480:2
chr8	144992862	rs7819099	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:32:5:0.600:2	0/1:2,41:32:43:0.953:2	0/1:29,26:30:55:0.473:2	0/1:24,35:32:59:0.593:2	0/1:19,11:32:30:0.367:2	0/1:37,28:31:65:0.431:2	0/1:25,26:30:51:0.510:2	0/1:21,15:32:36:0.417:2	0/1:24,13:33:37:0.351:2
chr8	144993069	rs28455570	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:2,12:31:14:0.857:2	./.	./.	./.	./.	./.	./.	0/1:13,14:30:27:0.519:2	0/1:8,12:31:20:0.600:2	0/1:7,9:30:16:0.563:2	0/1:6,9:31:15:0.600:2
chr8	144993324	rs6984820	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,58:30:61:0.951:2	0/1:33,51:31:84:0.607:2	0/1:37,19:30:56:0.339:2	0/1:33,26:31:59:0.441:2	0/1:42,27:31:69:0.391:2	0/1:28,24:31:52:0.462:2	0/1:26,14:31:40:0.350:2	0/1:24,13:32:37:0.351:2
chr8	144993377	rs6992333	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,44:32:44:1.00:2	0/1:35,30:32:65:0.462:2	0/1:30,24:33:54:0.444:2	0/1:22,16:33:38:0.421:2	0/1:26,27:32:53:0.509:2	0/1:20,25:33:45:0.556:2	0/1:26,12:32:38:0.316:2	0/1:18,13:33:31:0.419:2
chr8	144993435	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,6:31:53:0.113:2	./.	./.
chr8	144995077	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,19:31:50:0.388:2	./.
chr8	144995494	rs6558407	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,40:30:41:0.976:2	0/1:5,15:30:20:0.750:2	0/1:12,17:30:29:0.586:2	0/1:10,12:31:22:0.545:2	0/1:18,17:31:35:0.486:2	0/1:6,5:30:11:0.455:2	0/1:7,17:30:24:0.708:2	0/1:0,6:31:6:1.00:2
chr8	144995736	rs11777402	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:8,3:29:11:0.273:2	0/1:0,5:32:5:1.00:2	0/1:0,45:30:45:1.00:2	0/1:17,15:28:33:0.469:2	0/1:17,22:29:39:0.564:2	0/1:4,4:24:8:0.500:2	0/1:14,21:30:35:0.600:2	0/1:23,20:32:43:0.465:2	0/1:7,12:29:19:0.632:2	0/1:4,5:28:9:0.556:2
chr8	144995964	rs35139934	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,13:28:18:0.722:2	./.	./.	./.	./.	./.
chr8	144996029	rs7833924	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,8:32:10:0.800:2	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.
chr8	144996408	rs11778026	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,2:33:4:0.500:2	0/1:0,43:32:43:1.00:2	0/1:32,17:32:49:0.347:2	0/1:33,19:33:52:0.365:2	0/1:18,20:32:38:0.526:2	0/1:21,20:31:41:0.488:2	0/1:17,19:29:36:0.528:2	0/1:5,12:32:17:0.706:2	0/1:14,8:30:22:0.364:2
chr8	144997656	rs7016416	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:31:8:1.00:2	./.	./.	./.	0/1:2,5:34:7:0.714:2	./.	0/1:1,5:31:6:0.833:2	./.
chr8	144997926	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.
chr8	144997927	rs7002002	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:31:6:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr8	144998190	rs2857829	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,3:35:5:0.600:2	./.	./.	./.	./.	./.	./.
chr8	144998446	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.
chr8	144999417	rs55836855	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.
chr8	144999621	rs55646585	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:30:5:1.00:2	0/1:0,2:29:2:1.00:2	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.
chr8	144999642	rs56117011	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:29:4:1.00:2	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.
chr8	145001031	rs55895668	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,11:27:15:0.733:2	0/1:1,113:28:115:0.991:2	0/1:66,69:27:135:0.511:2	0/1:66,45:29:112:0.405:2	0/1:81,48:28:129:0.372:2	0/1:73,59:27:132:0.447:2	0/1:47,32:28:79:0.405:2	0/1:45,37:29:82:0.451:2	0/1:38,28:27:66:0.424:2
chr8	145001509	rs11136333	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:28:7:0.429:2	0/1:0,55:28:55:1.00:2	0/1:23,37:28:60:0.617:2	0/1:28,31:28:59:0.525:2	0/1:27,19:29:46:0.413:2	0/1:35,24:28:59:0.407:2	0/1:27,17:28:45:0.386:2	0/1:24,18:27:42:0.429:2	0/1:21,19:28:40:0.475:2
chr8	145001588	rs11136334	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,2:35:3:0.667:2	./.	./.	./.	./.	./.	./.
chr8	145002070	rs145376880	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,12:29:14:0.857:2	./.	./.	./.	./.
chr8	145004702	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,4:34:74:0.054:2	./.	./.	./.	./.	./.	./.	./.
chr8	145006790	rs10866916	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:27:5:1.00:2	./.	./.	0/1:3,3:30:6:0.500:2	0/1:5,3:26:8:0.375:2	./.	./.	./.
chr8	145006992	rs3135103	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,42:33:78:0.538:2	./.	0/1:14,13:33:27:0.481:2
chr8	145007187	rs11136336	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,48:28:48:1.00:2	0/1:11,37:29:48:0.771:2	0/1:16,25:27:41:0.610:2	0/1:14,9:28:23:0.391:2	0/1:7,23:27:30:0.767:2	0/1:15,21:29:36:0.583:2	./.	0/1:8,10:29:18:0.556:2
chr8	145008560	rs11783799	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,15:29:18:0.833:2	0/1:1,108:30:109:0.991:2	0/1:107,61:29:168:0.363:2	0/1:56,66:30:122:0.541:2	0/1:80,62:30:142:0.437:2	0/1:81,54:30:135:0.400:2	0/1:52,37:31:89:0.416:2	./.	0/1:42,21:29:63:0.333:2
chr8	145009036	rs138924815	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,31:30:44:0.705:2	./.	./.	./.	./.	./.
chr8	145011204	rs6993938	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,14:31:18:0.778:2	0/1:0,80:29:80:1.00:2	0/1:69,58:29:127:0.457:2	0/1:76,47:31:123:0.382:2	0/1:77,60:30:137:0.438:2	0/1:83,63:29:146:0.432:2	0/1:40,41:30:81:0.506:2	./.	0/1:35,27:30:62:0.435:2
chr8	145024570	rs200335928	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,4:31:10:0.400:2
chr8	145024578	rs190222339	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,7:30:14:0.500:2
chr8	145047608	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,3:31:17:0.176:2	./.
chr8	145051905	rs144692936	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,9:31:24:0.375:2	./.	./.	./.	./.	./.	./.	./.
chr8	145057868	rs11544989	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,6:30:11:0.545:2	0/1:0,51:28:52:1.00:2	0/1:27,30:28:57:0.526:2	0/1:34,28:28:62:0.452:2	0/1:50,21:28:72:0.296:2	0/1:64,24:27:88:0.273:2	0/1:48,26:27:75:0.351:2	./.	0/1:23,21:28:45:0.477:2
chr8	145058986	rs11136343	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,5:31:9:0.556:2	0/1:0,39:31:39:1.00:2	0/1:19,13:30:32:0.406:2	0/1:21,17:30:38:0.447:2	0/1:30,31:29:61:0.508:2	0/1:24,17:30:41:0.415:2	0/1:25,14:30:39:0.359:2	./.	0/1:32,28:30:60:0.467:2
chr8	145059425	rs11136344	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,5:30:9:0.556:2	0/1:0,51:30:51:1.00:2	0/1:17,20:29:37:0.541:2	0/1:28,17:29:45:0.378:2	0/1:25,14:27:39:0.359:2	0/1:30,23:29:53:0.434:2	0/1:22,26:31:48:0.542:2	./.	0/1:15,21:28:36:0.583:2
chr8	145060112	rs11136345	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,6:31:11:0.545:2	0/1:0,84:30:84:1.00:2	0/1:42,53:31:95:0.558:2	0/1:39,55:31:94:0.585:2	0/1:32,31:31:63:0.492:2	0/1:50,33:31:83:0.398:2	0/1:36,23:31:60:0.390:2	./.	0/1:19,24:33:43:0.558:2
chr8	145066168	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,5:29:170:0.029:2	./.	./.	./.	./.
chr8	145066775	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:33:183:0.022:2	./.	./.	./.	./.
chr8	145066886	rs13277282	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,98:32:98:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,156:33:156:1.00:2	0/1:0,145:32:145:1.00:2	0/1:0,157:32:157:1.00:2	0/1:0,153:32:153:1.00:2	0/1:0,182:32:182:1.00:2	0/1:0,140:33:140:1.00:2	0/1:0,127:33:127:1.00:2	0/1:0,115:32:115:1.00:2
chr8	145086736	rs201053154	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,21:9:117:0.179:2	./.	./.	./.	./.	./.	0/1:68,12:16:80:0.150:2	0/1:73,12:15:85:0.141:2
chr8	145095681	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,3:31:18:0.167:2	./.
chr8	145107795	rs11136253	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,28:32:28:1.00:2
chr8	145107915	rs200620019	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,21:31:37:0.568:2	./.	./.	./.	./.
chr8	145107986	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,13:29:38:0.342:2	0/1:16,4:30:20:0.200:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	145108151	rs61732533	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,40:32:83:0.482:2	./.	./.
chr8	145111529	rs11993554	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,4:30:16:0.250:2	./.	./.	./.	./.
chr8	145111615	rs10107332	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,47:32:87:0.540:2	./.	0/1:21,17:31:38:0.447:2
chr8	145111979	rs72695427	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,49:31:90:0.544:2	./.	./.	./.	0/1:28,46:32:74:0.622:2	./.	0/1:29,34:32:63:0.540:2	./.
chr8	145112820	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:30:99:0.040:2	./.	./.	./.	./.	./.
chr8	145112983	rs55916375	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,29:31:68:0.426:2	./.	./.	./.	./.
chr8	145113795	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,3:34:26:0.115:2	./.	./.
chr8	145114643	rs6558292	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,6:30:14:0.429:2	./.	./.	./.	./.
chr8	145114844	rs7004867	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,7:31:24:0.292:2	./.	./.	./.	./.
chr8	145114924	rs7003860	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,13:30:26:0.500:2	./.	./.	./.	./.
chr8	145139727	rs4977165	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,35:32:72:0.486:2	./.	./.	./.	./.
chr8	145150832	rs7820984	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:29:23:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,37:28:37:1.00:2	0/1:0,28:28:28:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,24:29:24:1.00:2	0/1:0,19:29:19:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,17:28:17:1.00:2	0/1:0,10:29:10:1.00:2
chr8	145154222	rs34674752	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,37:31:73:0.507:2	./.	./.
chr8	145154257	rs11541804	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,29:32:56:0.518:2	./.	0/1:45,31:31:76:0.408:2	0/1:42,27:32:70:0.391:2	./.	./.	./.	./.
chr8	145160646	rs11136256	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:30:28:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,2:29:2:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,35:29:35:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,59:29:60:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,32:28:32:1.00:2
chr8	145161823	rs11546144	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:33:23:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,38:32:38:1.00:2	0/1:19,25:32:44:0.568:2	0/1:0,33:32:33:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,21:33:21:1.00:2
chr8	145223288	rs34819224	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:28:35:1.00:2	0/1:0,13:30:14:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,48:29:48:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,71:30:71:1.00:2	0/1:1,56:28:57:0.982:2	0/1:0,79:30:81:1.00:2	0/1:0,50:28:51:1.00:2	0/1:0,40:29:40:1.00:2	0/1:0,25:29:25:1.00:2
chr8	145234422	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:30:95:0.042:2
chr8	145234474	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:32:67:0.060:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	145267982	rs373393781	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:28:85:0.047:2	./.	./.
chr8	145294052	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:28:13:0.308:2	./.	./.	./.	./.	./.	./.	./.
chr8	145309825	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,11:31:27:0.407:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	145315726	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,3:32:6:0.500:2	./.	./.	0/1:8,4:33:12:0.333:2	0/1:0,5:32:5:1.00:2	./.	./.	0/1:3,3:28:6:0.500:2	0/1:1,3:33:4:0.750:2	0/1:1,4:30:5:0.800:2	./.
chr8	145438921	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.
chr8	145439183	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:32:135:0.030:2	./.	./.	./.	./.
chr8	145486405	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,25:29:25:1.00:2	./.	./.	./.	./.	./.
chr8	145487673	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,16:30:16:1.00:2	./.	./.	./.	./.	./.
chr8	145489049	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,15:30:34:0.441:2	./.
chr8	145541264	rs375426675	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,3:33:27:0.111:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	145541368	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,12:15:71:0.169:2	./.	./.	./.
chr8	145541766	rs55962377	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,54:31:94:0.574:2	0/1:63,60:31:123:0.488:2	./.	./.	./.
chr8	145541789	rs151256660	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,28:33:58:0.483:2
chr8	145542375	rs55907012	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,35:31:63:0.556:2	./.
chr8	145580011	rs372210529	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:32:114:0.035:2	./.	./.	./.	./.
chr8	145580535	rs61746974	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,25:28:54:0.463:2	./.	0/1:23,38:30:61:0.623:2	0/1:39,90:30:129:0.698:2	./.	./.	./.	./.
chr8	145581767	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	145583069	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:32:86:0.047:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	145603114	rs6599528	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,66:33:131:0.504:2	0/1:52,33:33:85:0.388:2	0/1:14,10:33:24:0.417:2	0/1:2,164:33:166:0.988:2	0/1:86,72:33:158:0.456:2	0/1:0,165:33:165:1.00:2	0/1:88,69:33:157:0.439:2	0/1:169,4:34:173:0.023:2	./.	0/1:93,68:32:162:0.422:2	0/1:100,78:33:178:0.438:2
chr8	145617910	rs7843675	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:32:11:0.455:2	./.	0/1:2,3:31:5:0.600:2	0/1:8,8:30:16:0.500:2	./.	./.	./.	./.
chr8	145618597	rs1871532	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:1,8:32:9:0.889:2	0/1:5,10:31:15:0.667:2	./.	./.	./.	./.	0/1:4,4:34:8:0.500:2	./.
chr8	145620764	rs11556134	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,26:29:55:0.473:2	0/1:20,18:29:39:0.474:2	./.	./.	./.
chr8	145623963	rs4317614	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,48:31:120:0.400:2	0/1:34,24:32:58:0.414:2	0/1:9,9:29:18:0.500:2	0/1:87,76:31:164:0.466:2	0/1:103,86:31:189:0.455:2	0/1:84,82:31:166:0.494:2	./.	./.	./.	0/1:57,37:30:94:0.394:2	0/1:64,56:31:121:0.467:2
chr8	145624744	rs151272774	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,21:31:39:0.538:2	./.	./.	./.	./.	./.	./.
chr8	145624887	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:32:56:0.071:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	145639726	rs2272662	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,161:27:168:0.964:2	0/1:0,74:29:74:1.00:2	./.	0/1:81,90:29:171:0.526:2	0/1:78,85:27:163:0.521:2	0/1:0,144:29:144:1.00:2	0/1:103,65:28:168:0.387:2	0/1:95,63:28:158:0.399:2	./.	0/1:88,78:28:166:0.470:2	0/1:75,64:28:140:0.460:2
chr8	145640411	rs2977838	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:30:26:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,44:29:44:1.00:2	0/1:18,22:32:40:0.550:2	0/1:0,39:30:39:1.00:2	0/1:0,24:29:24:1.00:2
chr8	145640611	rs370684039	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,3:33:52:0.058:2	./.	./.	./.	./.	./.
chr8	145641328	rs17855765	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,25:30:26:1.00:2	0/1:0,23:30:24:1.00:2	0/1:6,12:28:19:0.667:2	0/1:8,7:29:15:0.467:2	0/1:1,28:29:29:0.966:2	./.	0/1:0,15:31:15:1.00:2	0/1:0,23:30:23:1.00:2
chr8	145641564	rs2280839	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,13:31:13:1.00:2	0/1:0,8:33:8:1.00:2	0/1:10,10:30:20:0.500:2	0/1:8,7:31:15:0.467:2	0/1:0,15:31:15:1.00:2	./.	0/1:0,14:29:14:1.00:2	0/1:0,9:26:9:1.00:2
chr8	145642002	rs2280838	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,47:30:47:1.00:2	0/1:0,58:29:58:1.00:2	0/1:28,17:29:45:0.378:2	0/1:18,18:31:36:0.500:2	0/1:0,59:30:59:1.00:2	./.	0/1:0,30:31:31:1.00:2	0/1:0,19:29:19:1.00:2
chr8	145642111	rs13251676	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,26:28:69:0.377:2	./.	./.	./.	./.	./.	./.	0/1:11,8:26:19:0.421:2
chr8	145655860	rs34999346	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,13:33:35:0.371:2	0/1:14,18:32:32:0.563:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr8	145661320	rs2721140	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.
chr8	145661675	rs7830832	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	./.
chr8	145665407	rs2229315	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,50:31:50:1.00:2	0/1:0,14:29:14:1.00:2	0/1:25,11:31:36:0.306:2	0/1:1,12:30:13:0.923:2	0/1:0,42:31:42:1.00:2	./.	0/1:0,27:31:27:1.00:2	0/1:0,18:32:18:1.00:2
chr8	145665516	rs2306383	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:33:67:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,101:33:101:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,111:33:111:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,103:33:103:1.00:2	0/1:0,100:33:100:1.00:2	0/1:0,89:32:89:1.00:2
chr8	145665761	rs2229313	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,56:31:56:1.00:2	0/1:0,68:31:68:1.00:2	0/1:27,40:31:67:0.597:2	0/1:17,19:31:36:0.528:2	0/1:0,45:32:45:1.00:2	0/1:14,28:33:42:0.667:2	0/1:0,44:31:44:1.00:2	0/1:0,27:31:27:1.00:2
chr8	145675888	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:33:189:0.021:2	./.	./.	./.
chr8	145689667	rs142152732	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,13:28:27:0.481:2	./.
chr8	145689915	rs2721167	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:31:16:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,18:32:18:1.00:2
chr8	145692385	rs2250891	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	0/1:0,4:28:4:1.00:2	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	0/1:0,2:27:2:1.00:2
chr8	145693720	rs2250657	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:29:39:1.00:2	0/1:0,15:28:15:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,49:28:49:1.00:2	0/1:0,50:28:50:1.00:2	0/1:0,29:28:29:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,67:28:67:1.00:2	0/1:0,31:28:31:1.00:2	0/1:0,36:28:36:1.00:2	0/1:0,43:29:43:1.00:2
chr8	145725934	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.
chr8	145729727	rs1063739	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,22:30:36:0.611:2	0/1:16,14:31:30:0.467:2	0/1:0,2:31:2:1.00:2	0/1:31,34:31:65:0.523:2	0/1:36,34:31:70:0.486:2	0/1:19,23:30:42:0.548:2	0/1:16,30:30:46:0.652:2	0/1:27,23:31:52:0.460:2	0/1:0,53:31:53:1.00:2	0/1:18,23:31:41:0.561:2	0/1:8,11:31:19:0.579:2
chr8	145731725	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,3:30:23:0.130:2	./.	./.	./.	./.
chr8	145732205	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,38:31:66:0.576:2	./.	./.	./.	./.	./.	./.
chr8	145735113	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,4:32:20:0.200:2	./.	./.	./.	./.	./.	./.	./.
chr8	145737636	rs4925828	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:33:22:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,28:31:28:1.00:2	0/1:1,33:32:34:0.971:2	0/1:0,74:32:74:1.00:2	0/1:0,53:34:53:1.00:2	0/1:0,44:33:44:1.00:2	0/1:0,36:32:36:1.00:2
chr8	145737701	rs34666647	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,15:32:31:0.484:2	./.	./.	./.	./.
chr8	145737816	rs4251691	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,9:32:23:0.391:2	0/1:7,5:32:12:0.417:2	0/1:0,3:31:3:1.00:2	0/1:11,17:30:28:0.607:2	0/1:16,13:31:29:0.448:2	0/1:1,12:31:13:0.923:2	0/1:17,14:32:31:0.452:2	0/1:26,14:30:40:0.350:2	0/1:0,33:31:33:1.00:2	0/1:8,6:33:14:0.429:2	0/1:3,9:30:12:0.750:2
chr8	145738368	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,4:31:84:0.048:2	./.	./.	./.	./.	./.	./.
chr8	145739583	rs201734382	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,42:31:91:0.462:2	./.	./.	./.	./.	./.	./.
chr8	145741702	rs4244612	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,9:29:23:0.391:2	0/1:5,7:32:12:0.583:2	./.	0/1:5,7:30:12:0.583:2	0/1:7,6:31:13:0.462:2	./.	0/1:9,4:25:13:0.308:2	0/1:8,11:31:19:0.579:2	0/1:0,4:32:4:1.00:2	0/1:6,4:33:10:0.400:2	./.
chr8	145741765	rs4244613	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,4:29:12:0.333:2	./.	./.	0/1:3,4:30:7:0.571:2	0/1:4,3:30:7:0.429:2	0/1:3,6:29:9:0.667:2	0/1:8,4:31:12:0.333:2	0/1:4,4:27:8:0.500:2	./.	0/1:4,5:31:9:0.556:2	0/1:3,5:29:8:0.625:2
chr8	145742514	rs2721190	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:32:24:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,22:33:22:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,14:31:14:1.00:2
chr8	145742879	rs2306386	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:1,3:32:4:0.750:2	./.	0/1:4,4:31:8:0.500:2	0/1:6,4:31:10:0.400:2	./.	./.	./.	0/1:0,5:29:5:1.00:2	./.	0/1:0,2:29:2:1.00:2
chr8	145745182	rs2721172	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:33:82:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,104:33:104:1.00:2	0/1:0,179:32:179:1.00:2	0/1:0,128:33:128:1.00:2	0/1:0,124:32:125:1.00:2	0/1:0,155:32:155:1.00:2	0/1:0,84:33:84:1.00:2	0/1:0,68:33:68:1.00:2	0/1:0,83:32:83:1.00:2
chr8	145747920	rs13277542	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:29:6:1.00:2	./.	./.	./.	0/1:1,3:29:4:0.750:2	./.	./.	./.	./.	./.	./.
chr8	145748699	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:29:87:0.047:2	./.
chr8	145756170	rs873884	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,16:29:25:0.640:2	0/1:9,9:31:18:0.500:2	./.	0/1:18,16:27:34:0.471:2	0/1:0,20:29:20:1.00:2	0/1:11,11:30:22:0.500:2	0/1:0,22:30:22:1.00:2	0/1:9,9:29:19:0.500:2	0/1:15,8:31:23:0.348:2	0/1:7,5:31:12:0.417:2	./.
chr8	145771103	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:32:102:0.040:2	./.	./.	./.
chr8	145806262	rs117042905	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,8:32:12:0.667:2	./.	./.
chr8	145948440	rs61732715	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,35:33:51:0.686:2	./.	./.	./.	./.
chr8	146003895	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:33:104:0.038:2	./.	./.
chr8	146005666	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:33:188:0.021:2	./.	./.
chr8	146016869	rs11539893	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,23:28:39:0.590:2	./.	./.	./.	./.
chr8	146029112	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:33:184:0.022:2	./.	./.	./.	./.	./.
chr8	146032842	rs62531506	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,12:32:24:0.500:2	0/1:9,8:30:17:0.471:2	./.	0/1:5,15:31:20:0.750:2	0/1:29,19:31:48:0.396:2	0/1:19,32:31:51:0.627:2	0/1:19,29:31:48:0.604:2	./.	./.	./.	./.
chr8	146062872	rs138582829	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,25:29:54:0.472:2	./.
chr8	146067054	rs1735169	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,21:32:45:0.467:2	./.	./.	0/1:39,31:32:70:0.443:2	./.	0/1:13,22:32:35:0.629:2	0/1:0,32:31:32:1.00:2	0/1:8,9:32:17:0.529:2
chr8	146068322	rs9004	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,11:32:21:0.524:2	./.	./.	./.	./.	0/1:19,12:33:31:0.387:2	0/1:0,20:32:20:1.00:2	0/1:18,18:32:36:0.500:2
chr8	146068451	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,7:31:35:0.200:2	./.
chr8	146068521	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:32:43:0.093:2	./.
chr8	146076611	rs140849685	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,30:32:52:0.577:2	./.	./.	./.	./.	./.	./.	./.
chr8	146076708	rs1209879	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,83:30:164:0.509:2	./.	./.	0/1:85,75:31:160:0.469:2	./.	0/1:75,72:32:147:0.490:2	0/1:0,130:31:130:1.00:2	0/1:61,45:31:106:0.425:2
chr8	146115367	rs2735906	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,26:30:70:0.371:2	0/1:29,15:32:45:0.341:2	0/1:0,9:32:9:1.00:2	0/1:55,39:32:96:0.415:2	0/1:49,43:31:92:0.467:2	./.	0/1:49,29:32:78:0.372:2	0/1:0,73:32:73:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,66:32:66:1.00:2	0/1:2,91:31:93:0.978:2
chr8	146156247	rs3735789	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,21:32:47:0.447:2	./.	./.	./.	0/1:55,3:34:58:0.052:2	./.	0/1:34,26:33:60:0.433:2
chr8	146157112	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr8	146157130	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:33:76:0.053:2	./.	./.	./.	./.
chr8	146157339	rs3735787	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,34:29:60:0.567:2	./.	0/1:89,4:31:93:0.043:2	./.	./.	./.	0/1:57,51:30:108:0.472:2
chr8	146171437	rs3735785	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,31:31:63:0.492:2	./.	./.	./.	./.	./.	0/1:24,21:31:45:0.467:2
chr9	14810	rs71509922	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:171,9:31:180:0.050:2	./.	./.	./.	./.	./.	./.	./.
chr9	14816	rs200377821	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:31:12:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	14863	rs71509923	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,10:32:11:0.909:2	0/1:0,3:31:3:1.00:2	./.	0/1:160,10:32:170:0.059:2	0/1:103,8:31:111:0.072:2	0/1:74,5:26:79:0.063:2	0/1:106,16:30:122:0.131:2	0/1:144,11:32:155:0.071:2	0/1:147,10:33:157:0.064:2	0/1:91,15:31:106:0.142:2	0/1:153,10:30:163:0.061:2
chr9	14889	rs71509924	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:1,6:32:7:0.857:2	./.	./.	./.	./.	./.	0/1:82,4:32:86:0.047:2	0/1:58,25:30:84:0.301:2	0/1:75,38:33:113:0.336:2	./.	./.
chr9	14926	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,11:32:30:0.367:2	0/1:12,3:32:15:0.200:2	./.	0/1:98,9:32:107:0.084:2	0/1:54,7:31:61:0.115:2	./.	0/1:37,6:32:43:0.140:2	./.	0/1:68,9:33:77:0.117:2	./.	0/1:102,16:32:118:0.136:2
chr9	15066	rs371198505	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:32:10:0.400:2	0/1:136,53:31:189:0.280:2	./.	./.	0/1:98,23:32:121:0.190:2	0/1:164,35:31:199:0.176:2	0/1:164,28:33:192:0.146:2	./.	./.
chr9	15126	.	G	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:41,13:34:54:0.241:2	0/1:24,4:33:28:0.143:2	./.	0/1:75,9:33:84:0.107:2	0/1:59,6:32:65:0.092:2	0/1:94,6:30:100:0.060:2	0/1:61,4:32:65:0.062:2	0/1:64,9:33:73:0.123:2	0/1:65,7:34:72:0.097:2	./.	0/1:58,7:30:65:0.108:2
chr9	15140	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,6:32:37:0.162:2	./.
chr9	15156	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,15:32:35:0.429:2	0/1:12,5:32:17:0.294:2	./.	0/1:57,10:32:67:0.149:2	0/1:41,7:31:48:0.146:2	0/1:48,7:29:55:0.127:2	0/1:44,7:30:51:0.137:2	0/1:50,9:32:59:0.153:2	0/1:37,8:33:45:0.178:2	0/1:22,4:29:26:0.154:2	0/1:43,7:30:50:0.140:2
chr9	15164	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:21,7:27:28:0.250:2	0/1:9,6:24:15:0.400:2	./.	0/1:60,4:31:64:0.063:2	./.	0/1:44,4:31:48:0.083:2	0/1:41,5:27:46:0.109:2	0/1:53,4:31:57:0.070:2	0/1:30,6:29:36:0.167:2	0/1:11,6:31:17:0.353:2	0/1:38,7:31:45:0.156:2
chr9	24899	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,3:29:8:0.375:2	0/1:0,6:31:6:1.00:2	./.	0/1:15,3:32:18:0.167:2	0/1:16,7:31:23:0.304:2	0/1:6,9:32:15:0.600:2	./.	0/1:14,10:32:24:0.417:2	./.	./.	0/1:6,3:31:9:0.333:2
chr9	30154	rs202045526	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:99,21:32:120:0.175:2	0/1:39,15:32:54:0.278:2	./.	0/1:130,15:31:145:0.103:2	./.	0/1:111,13:31:124:0.105:2	0/1:41,4:31:45:0.089:2	0/1:74,5:32:79:0.063:2	0/1:142,10:32:152:0.066:2	0/1:90,5:33:95:0.053:2	0/1:163,7:32:170:0.041:2
chr9	30189	rs200937027	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:101,30:33:131:0.229:2	0/1:44,24:32:68:0.353:2	./.	0/1:108,28:31:136:0.206:2	0/1:67,12:32:79:0.152:2	0/1:91,25:32:116:0.216:2	0/1:34,13:32:48:0.277:2	0/1:48,17:32:65:0.262:2	0/1:138,21:32:159:0.132:2	0/1:81,21:33:102:0.206:2	0/1:147,24:32:171:0.140:2
chr9	30267	rs200000155	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:156,15:32:171:0.088:2	0/1:87,7:32:94:0.074:2	./.	0/1:171,6:28:177:0.034:2	0/1:107,9:30:116:0.078:2	0/1:169,11:30:182:0.061:2	0/1:46,4:32:50:0.080:2	0/1:115,4:32:119:0.034:2	0/1:167,9:31:176:0.051:2	0/1:118,7:32:125:0.056:2	0/1:190,8:32:198:0.040:2
chr9	34925	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,8:32:177:0.045:2	./.	./.	./.
chr9	34955	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:149,5:32:154:0.032:2	./.	./.	./.	./.	0/1:99,11:30:110:0.100:2	./.	./.	0/1:139,4:32:143:0.028:2	./.
chr9	116800	rs79220013	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:39,33:31:72:0.458:2	0/1:28,16:31:44:0.364:2	./.	./.	0/1:30,27:30:57:0.474:2	0/1:33,31:30:64:0.484:2	0/1:18,18:31:36:0.500:2	./.	0/1:28,36:33:64:0.563:2	./.	./.
chr9	116818	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,3:32:41:0.073:2	./.	./.	./.	./.	./.	./.	./.
chr9	116832	rs4742632	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,19:27:38:0.500:2	0/1:16,10:23:27:0.385:2	./.	./.	0/1:22,17:28:39:0.436:2	0/1:18,22:27:40:0.550:2	0/1:7,11:28:18:0.611:2	./.	0/1:13,26:29:39:0.667:2	./.	./.
chr9	117056	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:125,5:31:130:0.038:2	./.	./.	0/1:158,5:31:164:0.031:2	./.	./.	./.	0/1:176,5:28:181:0.028:2	./.	./.	./.
chr9	117072	.	G	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:124,5:28:129:0.039:2	./.	./.	0/1:154,5:30:159:0.031:2	./.	0/1:175,6:30:182:0.033:2	./.	./.	./.	./.	./.
chr9	117266	.	T	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:30:5:0.600:2	0/1:30,6:33:36:0.167:2	0/1:19,4:31:23:0.174:2	0/1:27,5:31:32:0.156:2	./.	0/1:21,3:31:24:0.125:2	0/1:13,5:33:18:0.278:2	0/1:26,6:32:32:0.188:2	./.
chr9	117293	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:10,3:32:13:0.231:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,3:32:18:0.167:2	./.
chr9	117302	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,4:31:10:0.400:2	0/1:7,5:29:12:0.417:2	./.	0/1:13,3:31:16:0.188:2	0/1:4,4:29:8:0.500:2	0/1:12,5:29:17:0.294:2	./.	./.	0/1:2,4:30:6:0.667:2	0/1:6,8:29:14:0.571:2	./.
chr9	117305	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,3:27:14:0.214:2	./.
chr9	117506	rs2492215	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,3:31:11:0.273:2	./.	./.	./.
chr9	117608	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:29:91:0.044:2	./.
chr9	117663	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,5:31:161:0.031:2	./.
chr9	117666	rs7031810	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,23:26:48:0.479:2	0/1:14,13:24:27:0.481:2	./.	0/1:0,48:27:48:1.00:2	0/1:33,14:26:47:0.298:2	0/1:21,24:28:45:0.533:2	0/1:16,11:28:27:0.407:2	0/1:124,13:26:137:0.095:2	0/1:15,29:26:44:0.659:2	./.	./.
chr9	117696	rs9406415	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:31,24:32:55:0.436:2	0/1:23,16:32:39:0.410:2	./.	./.	0/1:30,27:30:57:0.474:2	0/1:24,28:29:52:0.538:2	0/1:21,12:27:33:0.364:2	./.	0/1:34,16:32:50:0.320:2	./.	./.
chr9	117713	rs2492216	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,58:29:58:1.00:2	0/1:2,35:29:37:0.946:2	./.	0/1:2,64:31:66:0.970:2	0/1:3,53:30:56:0.946:2	0/1:0,54:30:54:1.00:2	0/1:8,33:29:41:0.805:2	0/1:128,23:31:159:0.152:2	0/1:5,50:30:55:0.909:2	0/1:125,30:30:158:0.194:2	0/1:92,17:30:110:0.156:2
chr9	117800	rs2492217	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,5:27:66:0.076:2	./.	./.	0/1:80,4:31:84:0.048:2	./.	./.	./.
chr9	117867	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,3:31:34:0.088:2	./.	./.	./.	0/1:24,4:31:28:0.143:2
chr9	117877	rs7022056	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,15:29:42:0.357:2	0/1:7,5:24:12:0.417:2	./.	0/1:5,31:29:36:0.861:2	0/1:31,15:29:46:0.326:2	0/1:26,24:29:50:0.480:2	0/1:17,17:29:34:0.500:2	0/1:48,15:29:63:0.238:2	0/1:29,24:31:53:0.453:2	0/1:21,18:28:39:0.462:2	./.
chr9	117934	rs62533589	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,23:28:62:0.371:2	./.	./.	./.
chr9	117991	.	G	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:126,5:29:131:0.038:2	0/1:136,4:30:140:0.029:2	0/1:143,9:31:152:0.059:2	0/1:161,7:29:168:0.042:2	./.	./.	./.
chr9	117995	rs200476788	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,29:20:91:0.319:2	0/1:85,17:19:102:0.167:2	0/1:97,14:15:111:0.126:2	0/1:98,27:13:125:0.216:2	0/1:120,19:19:139:0.137:2	./.	./.	./.
chr9	117998	rs66612967	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,6:27:93:0.068:2	0/1:97,4:29:104:0.040:2	0/1:88,10:31:105:0.102:2	0/1:117,9:30:129:0.071:2	./.	0/1:26,49:27:76:0.653:2	./.
chr9	118004	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,5:27:129:0.039:2	./.	./.	./.
chr9	118032	rs9406416	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:45,41:31:86:0.477:2	0/1:43,35:31:79:0.449:2	./.	0/1:4,93:31:97:0.959:2	0/1:78,47:31:125:0.376:2	0/1:78,58:31:137:0.426:2	0/1:78,58:30:136:0.426:2	0/1:89,42:31:131:0.321:2	0/1:47,63:32:110:0.573:2	./.	./.
chr9	118094	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:162,5:27:167:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr9	118113	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:151,5:31:156:0.032:2	0/1:144,5:32:149:0.034:2	./.	./.	./.	./.	./.	./.
chr9	118122	rs2492218	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:147,5:32:152:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr9	118173	rs4146165	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:41,39:29:80:0.488:2	0/1:28,22:31:50:0.440:2	0/1:6,3:33:9:0.333:2	./.	0/1:35,24:26:59:0.407:2	0/1:53,4:32:57:0.070:2	0/1:17,18:27:35:0.514:2	0/1:30,30:30:60:0.500:2	0/1:45,27:27:72:0.375:2	./.	0/1:18,23:26:41:0.561:2
chr9	118194	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,6:32:65:0.092:2	./.	./.	./.	./.	0/1:43,6:33:49:0.122:2	./.	./.	./.	./.	./.
chr9	118250	rs6474602	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,22:30:37:0.595:2	0/1:13,14:30:27:0.519:2	./.	0/1:0,43:31:43:1.00:2	0/1:13,11:30:24:0.458:2	0/1:19,14:30:33:0.424:2	0/1:17,8:26:25:0.320:2	0/1:14,21:30:35:0.600:2	0/1:10,17:30:28:0.630:2	0/1:9,11:30:21:0.550:2	./.
chr9	118266	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,3:33:32:0.094:2	./.	./.	./.	./.	0/1:28,3:31:31:0.097:2	./.	./.	./.	./.	./.
chr9	118342	rs2492221	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,4:27:16:0.250:2	./.	./.	./.
chr9	118345	rs11794423	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,4:28:15:0.267:2	./.	./.	./.
chr9	118418	rs4146164	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,18:31:18:1.00:2	0/1:0,11:30:11:1.00:2	./.	./.	0/1:1,15:29:16:0.938:2	0/1:21,4:31:25:0.160:2	0/1:0,14:28:14:1.00:2	0/1:12,11:31:23:0.478:2	0/1:11,4:32:15:0.267:2	0/1:4,11:31:15:0.733:2	0/1:3,18:31:21:0.857:2
chr9	118449	rs2998956	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,16:31:39:0.410:2	0/1:10,5:32:15:0.333:2	./.	./.	0/1:16,6:31:22:0.273:2	0/1:19,10:32:29:0.345:2	0/1:18,5:30:23:0.217:2	0/1:40,3:33:43:0.070:2	./.	0/1:10,12:32:22:0.545:2	0/1:21,9:32:30:0.300:2
chr9	118535	rs7036059	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,79:31:81:0.975:2	0/1:1,58:32:59:0.983:2	./.	0/1:0,105:32:105:1.00:2	0/1:3,74:31:77:0.961:2	0/1:24,99:31:123:0.805:2	0/1:30,15:33:45:0.333:2	0/1:85,46:32:131:0.351:2	0/1:7,109:32:116:0.940:2	./.	./.
chr9	118586	rs9407470	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2	0/1:112,86:31:198:0.434:2	./.	./.	0/1:183,5:31:188:0.027:2
chr9	118603	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,6:32:107:0.056:2	./.	./.	./.	0/1:176,5:32:182:0.028:2
chr9	118613	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:32:186:0.022:2	./.
chr9	118629	rs201212420	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,16:31:116:0.138:2	0/1:157,12:32:169:0.071:2	0/1:163,5:34:169:0.030:2	./.	./.
chr9	118653	rs9406417	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,115:33:115:1.00:2	0/1:1,102:33:103:0.990:2	./.	./.	0/1:143,4:36:148:0.027:2	./.	0/1:80,5:34:85:0.059:2	0/1:69,60:32:129:0.465:2	0/1:52,52:34:104:0.500:2	0/1:65,56:33:124:0.463:2	0/1:2,120:32:122:0.984:2
chr9	118759	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,17:30:41:0.415:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	118899	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.
chr9	172167	rs12380	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:130,51:31:181:0.282:2	0/1:96,41:31:137:0.299:2	0/1:51,38:31:89:0.427:2	0/1:157,36:32:194:0.187:2	0/1:130,64:30:194:0.330:2	0/1:134,51:31:185:0.276:2	0/1:134,43:31:177:0.243:2	0/1:116,72:31:188:0.383:2	0/1:140,52:32:192:0.271:2	0/1:148,36:32:184:0.196:2	0/1:167,30:31:197:0.152:2
chr9	173293	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:156,17:29:174:0.098:2	0/1:186,10:31:196:0.051:2	0/1:184,11:32:195:0.056:2	./.	0/1:189,6:32:195:0.031:2	0/1:172,17:28:189:0.090:2	./.	0/1:178,9:31:188:0.048:2	./.	./.	./.
chr9	173346	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:191,5:31:196:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr9	178919	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:78,8:31:86:0.093:2	0/1:47,10:31:57:0.175:2	./.	./.	0/1:119,15:32:134:0.112:2	0/1:106,10:32:116:0.086:2	0/1:137,16:31:153:0.105:2	./.	0/1:104,7:33:111:0.063:2	./.	./.
chr9	178937	rs202206422	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,3:32:42:0.071:2	./.	./.	0/1:126,4:32:130:0.031:2	./.	0/1:127,8:32:135:0.059:2	./.	./.	./.	./.
chr9	214593	rs116104753	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,10:31:24:0.417:2	./.
chr9	214804	rs76707254	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,6:29:18:0.333:2
chr9	214864	rs2236547	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	0/1:12,4:33:16:0.250:2	0/1:14,5:32:19:0.263:2
chr9	215269	rs636922	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:31:9:0.444:2	./.	./.	./.	0/1:0,14:30:14:1.00:2	./.	./.	0/1:2,6:31:8:0.750:2
chr9	215277	rs115917982	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,16:29:20:0.800:2	./.
chr9	215494	rs7869327	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:32:9:0.333:2	./.	./.	./.	./.	./.	./.	0/1:16,30:32:46:0.652:2	0/1:34,34:31:68:0.500:2
chr9	215511	rs2023402	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:33:8:0.500:2	./.	0/1:32,36:32:68:0.529:2	./.	0/1:44,43:32:87:0.494:2	./.	./.	./.	0/1:37,39:33:76:0.513:2
chr9	215534	rs635615	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:29:7:0.429:2	0/1:26,20:31:46:0.435:2	0/1:22,28:31:50:0.560:2	./.	./.	0/1:0,56:31:56:1.00:2	./.	0/1:28,14:32:42:0.333:2	0/1:43,33:33:76:0.434:2
chr9	271638	rs506121	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,29:30:29:1.00:2	./.	0/1:12,10:31:22:0.455:2	./.	0/1:1,30:31:31:0.968:2	0/1:15,12:32:27:0.444:2	0/1:12,14:30:26:0.538:2	0/1:19,20:32:39:0.513:2
chr9	286491	rs3209441	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,73:31:136:0.537:2	0/1:71,59:31:130:0.454:2	./.	./.	./.	0/1:93,67:32:160:0.419:2	./.	./.
chr9	286593	rs529208	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,53:32:117:0.453:2	0/1:49,47:31:96:0.490:2	0/1:11,13:31:24:0.542:2	0/1:83,58:31:141:0.411:2	./.	0/1:92,60:31:152:0.395:2	./.	0/1:83,86:32:169:0.509:2	./.	0/1:1,146:31:147:0.993:2	0/1:0,172:32:172:1.00:2
chr9	312124	rs2039045	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:48,21:31:69:0.304:2	0/1:21,10:33:31:0.323:2	./.	0/1:29,37:33:66:0.561:2	./.	./.	./.	./.	0/1:29,37:33:66:0.561:2	./.	0/1:46,30:32:76:0.395:2
chr9	328162	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:33:161:0.025:2	./.	./.	./.
chr9	334337	rs10970979	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,38:32:84:0.452:2	0/1:27,24:32:51:0.471:2	./.	0/1:55,38:33:93:0.409:2	0/1:40,35:32:75:0.467:2	./.	./.	0/1:77,45:33:122:0.369:2	0/1:62,60:34:122:0.492:2	./.	./.
chr9	368128	rs17673268	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,13:31:21:0.619:2	./.	./.	0/1:72,74:31:146:0.507:2	./.	./.	./.	0/1:51,54:31:105:0.514:2	./.
chr9	368164	rs141335439	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,48:32:112:0.429:2	./.
chr9	368230	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:33:160:0.025:2	./.	./.	./.
chr9	370244	rs913703	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,25:30:41:0.610:2	./.	./.	./.	./.	0/1:40,37:33:77:0.481:2	0/1:33,27:32:60:0.450:2	./.
chr9	371452	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:32:101:0.040:2	./.	./.
chr9	377066	rs12348944	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,8:32:27:0.296:2	0/1:6,8:31:14:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	377111	rs10814431	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:12,9:32:21:0.429:2	0/1:7,7:33:14:0.500:2	./.	0/1:14,22:32:36:0.611:2	./.	./.	./.	./.	0/1:11,7:33:18:0.389:2	./.	./.
chr9	390512	rs2297075	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,89:33:193:0.461:2	./.	./.	./.	./.	0/1:100,91:34:191:0.476:2	./.	./.
chr9	396836	rs16937932	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,71:32:153:0.464:2	./.
chr9	399255	rs34627722	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,31:30:67:0.470:2	./.
chr9	421032	rs2297079	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:78,70:32:148:0.473:2	0/1:47,39:31:86:0.453:2	0/1:7,12:32:19:0.632:2	./.	0/1:71,51:32:122:0.418:2	0/1:1,131:32:132:0.992:2	0/1:1,100:32:101:0.990:2	0/1:81,72:32:154:0.471:2	0/1:86,54:33:140:0.386:2	0/1:68,67:32:135:0.496:2	0/1:60,58:32:118:0.492:2
chr9	429719	rs7854035	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:30:67:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,74:30:74:1.00:2	0/1:0,82:30:82:1.00:2	0/1:0,85:30:85:1.00:2	0/1:0,106:30:106:1.00:2	0/1:1,69:31:70:0.986:2	0/1:0,46:31:46:1.00:2	0/1:0,72:31:72:1.00:2
chr9	439376	rs34098809	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,13:29:34:0.382:2	0/1:10,12:30:22:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	441952	rs1887957	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:32:28:1.00:2	0/1:0,23:32:23:1.00:2	0/1:2,4:32:6:0.667:2	0/1:23,20:31:43:0.465:2	0/1:0,12:30:12:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,23:33:23:1.00:2	0/1:25,13:32:38:0.342:2	0/1:29,24:32:53:0.453:2	0/1:17,20:31:37:0.541:2	0/1:0,56:32:56:1.00:2
chr9	449798	rs10491684	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,41:32:91:0.451:2
chr9	449874	rs34908836	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,16:33:39:0.410:2	./.	0/1:21,28:32:49:0.571:2	./.
chr9	452090	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,4:32:60:0.067:2	./.	./.	./.	./.	./.	./.
chr9	463655	rs79568455	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:57,10:15:67:0.149:2	./.	./.	0/1:69,11:17:80:0.138:2	./.	./.	./.	0/1:72,11:19:83:0.133:2	0/1:93,14:16:107:0.131:2	0/1:57,6:20:63:0.095:2	0/1:64,12:22:76:0.158:2
chr9	676954	rs2296055	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:40,29:32:69:0.420:2	0/1:31,23:32:54:0.426:2	./.	0/1:50,47:32:97:0.485:2	./.	./.	0/1:41,52:32:93:0.559:2	0/1:68,67:31:135:0.496:2	0/1:55,52:33:107:0.486:2	./.	0/1:0,95:32:95:1.00:2
chr9	710818	rs61737970	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,26:32:72:0.361:2	./.	./.
chr9	710890	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:32:110:0.036:2
chr9	710915	rs61737971	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,36:31:69:0.522:2	./.	./.	./.	./.	./.
chr9	710966	rs7860464	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,32:31:67:0.478:2	0/1:16,22:33:38:0.579:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,54:32:94:0.574:2
chr9	711396	rs28374506	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,27:32:55:0.491:2	0/1:13,15:33:28:0.536:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,39:31:75:0.520:2
chr9	712060	rs4465020	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,40:33:135:0.296:2	0/1:63,49:32:112:0.438:2	./.	./.	0/1:64,37:32:101:0.366:2	0/1:64,34:34:98:0.347:2	0/1:47,27:32:74:0.365:2	./.
chr9	712066	rs34680571	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,40:29:77:0.519:2	0/1:26,20:28:46:0.435:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,54:28:100:0.540:2
chr9	712137	rs912175	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,14:33:30:0.467:2	0/1:11,13:33:24:0.542:2	./.	0/1:17,27:32:44:0.614:2	0/1:20,16:32:36:0.444:2	0/1:19,16:30:35:0.457:2	0/1:18,14:32:32:0.438:2	0/1:12,19:32:32:0.613:2	0/1:17,20:32:37:0.541:2	./.	./.
chr9	712156	rs912174	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,15:33:29:0.517:2	0/1:10,10:32:20:0.500:2	./.	0/1:15,16:31:31:0.516:2	0/1:16,15:32:31:0.484:2	0/1:12,9:31:21:0.429:2	0/1:13,12:33:25:0.480:2	0/1:14,16:33:30:0.533:2	0/1:16,17:34:33:0.515:2	./.	./.
chr9	712599	rs11789987	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,59:32:110:0.536:2	0/1:60,46:31:106:0.434:2	./.	./.	0/1:59,52:31:111:0.468:2	0/1:49,61:32:110:0.555:2	0/1:46,41:32:87:0.471:2	./.
chr9	712784	rs144505189	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,68:32:144:0.472:2	./.	./.	./.	./.
chr9	730290	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:34:76:0.053:2
chr9	732536	rs34832656	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,36:33:94:0.383:2	0/1:34,35:32:69:0.507:2	0/1:3,4:33:7:0.571:2	0/1:63,55:33:118:0.466:2	0/1:51,37:31:88:0.420:2	./.	./.	0/1:72,59:32:131:0.450:2	0/1:73,42:33:115:0.365:2	0/1:53,52:32:105:0.495:2	./.
chr9	735749	rs138465954	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:32:9:0.333:2	./.	./.	./.	./.
chr9	740901	rs2296049	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,24:32:81:0.296:2	0/1:42,20:32:62:0.323:2	0/1:5,8:30:13:0.615:2	0/1:89,72:31:161:0.447:2	0/1:113,72:31:185:0.389:2	./.	./.	0/1:70,52:31:122:0.426:2	0/1:72,63:33:135:0.467:2	0/1:46,33:31:79:0.418:2	./.
chr9	742342	rs10733535	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,77:33:77:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,48:33:48:1.00:2
chr9	894036	rs16925431	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,37:32:66:0.561:2	./.	./.	./.	./.
chr9	968054	rs35846503	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,11:31:22:0.500:2	0/1:8,5:32:13:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	990653	rs16927037	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,35:30:63:0.556:2	./.
chr9	990840	rs7021244	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,33:31:59:0.569:2	0/1:20,17:32:37:0.459:2	0/1:5,8:31:13:0.615:2	0/1:0,88:31:88:1.00:2	./.	./.	0/1:38,49:30:87:0.563:2	./.	./.	./.	./.
chr9	1056728	rs3824419	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,39:31:40:0.975:2	0/1:1,25:31:26:0.962:2	./.	0/1:20,17:32:37:0.459:2	./.	0/1:0,55:30:55:1.00:2	0/1:27,38:32:65:0.585:2	0/1:19,23:32:42:0.548:2	./.	0/1:20,18:30:38:0.474:2	./.
chr9	1056959	rs17641078	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:33:8:0.375:2	./.	0/1:3,74:32:77:0.961:2	./.	./.	./.	0/1:48,52:33:100:0.520:2	0/1:44,45:33:89:0.506:2	./.
chr9	1057204	rs4741029	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,40:33:78:0.513:2	0/1:46,39:32:85:0.459:2	./.	./.
chr9	2029199	rs10964471	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,51:32:118:0.432:2	0/1:49,45:31:94:0.479:2	0/1:46,59:31:105:0.562:2	./.	./.	./.	./.
chr9	2039593	rs146359524	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,44:32:101:0.436:2	./.
chr9	2039827	rs10964525	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:5,9:29:14:0.643:2	0/1:5,8:32:13:0.615:2	./.	0/1:10,21:30:31:0.677:2	./.	./.	./.	./.	./.	./.	./.
chr9	2073292	rs13288443	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,28:31:55:0.509:2	./.	./.	./.	./.
chr9	2101545	rs10738570	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,38:31:83:0.458:2	./.	./.	./.	0/1:74,53:32:127:0.417:2	./.	./.
chr9	2116037	rs6601	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,14:33:32:0.438:2	./.	0/1:26,4:30:30:0.133:2
chr9	2170493	rs184903732	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,41:32:83:0.500:2	./.	./.	./.
chr9	2191309	rs2296212	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:44,42:33:86:0.488:2	0/1:20,33:33:53:0.623:2	./.	./.	./.	./.	0/1:52,37:33:89:0.416:2	./.	./.	./.	0/1:45,61:34:106:0.575:2
chr9	2635545	rs6149	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,8:31:16:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:87,81:31:168:0.482:2
chr9	2648773	rs6148	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,80:31:176:0.455:2	0/1:91,87:32:178:0.489:2	0/1:105,79:32:184:0.429:2	0/1:94,86:33:180:0.478:2	0/1:75,85:33:160:0.531:2	0/1:76,75:32:151:0.497:2
chr9	2651962	rs6145	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,20:31:39:0.513:2	0/1:16,15:31:31:0.484:2	0/1:24,19:30:43:0.442:2	0/1:9,14:32:23:0.609:2	0/1:15,20:31:35:0.571:2	0/1:28,11:31:39:0.282:2
chr9	2717922	rs10967705	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:63,35:32:98:0.357:2	0/1:35,22:32:57:0.386:2	./.	./.	0/1:83,72:33:155:0.465:2	0/1:60,62:32:123:0.508:2	0/1:89,86:33:175:0.491:2	./.	0/1:77,64:32:141:0.454:2	0/1:1,119:32:120:0.992:2	0/1:0,82:33:82:1.00:2
chr9	2718498	rs10967709	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,14:28:22:0.636:2	0/1:15,33:27:48:0.688:2	./.	./.	0/1:11,8:27:19:0.421:2	./.	./.
chr9	2718534	rs12237048	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,18:30:18:1.00:2	0/1:0,20:29:20:1.00:2	0/1:6,4:30:10:0.400:2	./.	0/1:15,10:29:25:0.400:2	./.	0/1:0,7:28:7:1.00:2	0/1:21,7:27:28:0.250:2	./.	0/1:15,5:30:20:0.250:2	0/1:0,22:27:22:1.00:2
chr9	2718654	rs7859993	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,18:31:34:0.529:2	./.
chr9	2718717	rs7860945	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,21:29:27:0.778:2	./.
chr9	2729475	rs41312842	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,31:30:73:0.425:2	./.	./.	./.	./.	./.	./.
chr9	2729686	rs12352254	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,18:32:50:0.360:2	0/1:44,29:32:73:0.397:2	./.	./.	./.	./.	./.
chr9	2804393	rs12171	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,61:33:168:0.363:2
chr9	2811505	rs2270888	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,31:32:84:0.369:2	0/1:28,29:31:57:0.509:2	0/1:1,4:31:5:0.800:2	0/1:64,36:30:100:0.360:2	./.	./.	0/1:5,113:31:118:0.958:2	./.	0/1:50,40:32:90:0.444:2	0/1:53,39:31:92:0.424:2	0/1:56,24:31:80:0.300:2
chr9	2828742	rs2270891	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,17:32:41:0.415:2
chr9	2828757	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,12:32:26:0.462:2	./.	./.	./.	./.
chr9	2828765	rs2173904	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,9:33:34:0.265:2	0/1:13,8:31:21:0.381:2	0/1:0,7:31:7:1.00:2	0/1:30,11:32:41:0.268:2	./.	./.	0/1:13,12:31:25:0.480:2	./.	0/1:20,13:33:33:0.394:2	0/1:13,16:33:29:0.552:2	0/1:0,32:31:32:1.00:2
chr9	2838470	rs10968457	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,55:32:141:0.390:2
chr9	2916741	rs10117905	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,94:31:95:0.989:2	0/1:0,43:31:43:1.00:2	0/1:7,8:31:15:0.533:2	0/1:62,71:32:133:0.534:2	./.	./.	0/1:54,55:31:109:0.505:2	0/1:76,68:31:144:0.472:2	./.	0/1:107,5:32:112:0.045:2	./.
chr9	2916753	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:31:93:0.043:2	./.	./.	./.	./.
chr9	2921825	rs4013197	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,30:30:90:0.333:2	./.	0/1:56,43:30:99:0.434:2	./.	0/1:36,46:30:82:0.561:2	0/1:38,43:31:81:0.531:2	0/1:24,23:32:47:0.489:2	./.
chr9	2948195	rs7857490	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,10:30:13:0.769:2	0/1:88,56:30:144:0.389:2	0/1:58,32:31:90:0.356:2	0/1:2,105:30:107:0.981:2	0/1:0,132:31:132:1.00:2	0/1:0,130:31:130:1.00:2	0/1:92,58:31:150:0.387:2	0/1:67,52:31:119:0.437:2	0/1:76,78:32:154:0.506:2
chr9	2992542	rs188949682	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,9:31:19:0.474:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	3013021	rs61732423	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,28:32:56:0.500:2	0/1:12,12:31:24:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	3247768	rs76378105	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,11:32:29:0.379:2	./.	./.	./.	./.	./.
chr9	3247951	rs2229356	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:29:7:0.429:2	./.	./.	./.	./.	./.
chr9	3344830	rs76210876	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,10:31:20:0.500:2	./.	./.	./.	./.	./.
chr9	3828312	rs147357710	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,21:30:53:0.396:2	./.	./.	./.
chr9	3898773	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,67:30:133:0.504:2	./.	./.	./.	./.
chr9	4118111	rs6415788	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	0/1:0,3:33:3:1.00:2	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.
chr9	4118208	rs806052	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,16:32:16:1.00:2	./.	0/1:0,5:33:5:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,6:32:6:1.00:2	./.	0/1:0,6:33:6:1.00:2	0/1:0,6:28:6:1.00:2
chr9	4286239	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,47:31:108:0.435:2	./.
chr9	4286255	rs117802495	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,55:31:153:0.359:2	./.	./.	./.	./.	./.	./.	./.
chr9	4544624	rs2228621	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,35:29:70:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr9	4564432	rs2228622	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,44:33:81:0.543:2	0/1:30,19:32:49:0.388:2	0/1:5,7:33:12:0.583:2	0/1:75,74:33:149:0.497:2	0/1:4,136:32:140:0.971:2	0/1:82,64:33:146:0.438:2	./.	0/1:89,62:33:151:0.411:2	0/1:0,126:34:126:1.00:2	./.	./.
chr9	4566036	rs73383440	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,25:31:55:0.455:2	./.	./.	./.	./.	./.	./.	./.
chr9	4576680	rs301430	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:80,74:29:154:0.481:2	0/1:40,44:29:84:0.524:2	./.	0/1:104,79:29:183:0.432:2	./.	0/1:81,92:29:173:0.532:2	0/1:93,78:29:173:0.456:2	0/1:0,175:29:175:1.00:2	0/1:77,90:30:167:0.539:2	0/1:84,70:30:154:0.455:2	0/1:0,148:29:148:1.00:2
chr9	4585528	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,28:31:77:0.364:2	./.	./.	./.	./.	./.	./.	./.
chr9	4622453	rs10974657	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:33:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	4625429	rs4742022	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:32:9:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	4662034	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,28:30:60:0.467:2	./.	./.
chr9	4663679	rs41279555	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,14:31:59:0.237:2	./.
chr9	4664077	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:30:99:0.040:2	./.	./.	./.	./.	./.
chr9	4664260	rs75920411	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,53:33:99:0.535:2	./.	./.	./.
chr9	4664749	rs1485202	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,45:30:129:0.349:2	./.	./.	./.	0/1:37,61:30:98:0.622:2	./.	./.	0/1:68,61:31:129:0.473:2
chr9	4664829	rs2295961	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,62:30:135:0.459:2	./.
chr9	4664836	rs2295962	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,5:31:14:0.357:2	./.	0/1:113,82:30:195:0.421:2	./.	0/1:100,89:31:189:0.471:2	./.	./.	0/1:66,64:31:130:0.492:2	./.
chr9	4664852	rs2295963	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,8:29:19:0.421:2	./.	0/1:114,80:28:194:0.412:2	./.	0/1:103,93:30:196:0.474:2	0/1:113,78:29:191:0.408:2	./.	0/1:67,80:29:147:0.544:2	./.
chr9	4685008	rs2295967	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,45:32:102:0.441:2
chr9	4688600	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,45:31:134:0.336:2	./.	./.	./.	./.	./.	./.	./.
chr9	4718449	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:32:57:0.070:2	./.	./.	./.	./.
chr9	4718469	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:32:52:0.077:2	./.	./.	./.	./.
chr9	4719255	rs199935643	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,31:31:61:0.508:2	./.	./.	./.	./.	./.
chr9	4833154	rs34215378	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,55:32:133:0.414:2	./.	./.
chr9	4849515	rs35815255	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,48:33:128:0.375:2	./.	./.	./.	./.	./.	./.	./.
chr9	5050706	rs2230722	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,17:31:48:0.354:2	0/1:12,8:30:20:0.400:2	0/1:5,3:26:8:0.375:2	0/1:27,13:30:40:0.325:2	0/1:27,29:30:56:0.518:2	0/1:36,23:29:59:0.390:2	./.	0/1:51,22:29:73:0.301:2	./.	./.	0/1:33,35:29:68:0.515:2
chr9	5066712	rs190968273	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,14:31:50:0.280:2	./.	./.	./.
chr9	5081780	rs2230724	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,58:33:59:0.983:2	0/1:1,27:32:28:0.964:2	0/1:1,5:31:6:0.833:2	0/1:22,31:32:53:0.585:2	0/1:0,25:32:25:1.00:2	0/1:0,54:31:54:1.00:2	./.	0/1:0,65:31:65:1.00:2	0/1:18,37:32:55:0.673:2	0/1:19,20:32:39:0.513:2	0/1:39,29:32:68:0.426:2
chr9	5090757	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:33:65:0.062:2	./.	./.
chr9	5231712	rs12720	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,34:31:58:0.586:2	0/1:15,20:30:35:0.571:2	./.	0/1:34,23:30:57:0.404:2	0/1:32,28:30:60:0.467:2	0/1:24,28:30:52:0.538:2	./.	./.	0/1:43,35:31:78:0.449:2	./.	0/1:34,38:31:72:0.528:2
chr9	5335470	rs2273782	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,49:31:49:1.00:2	0/1:48,26:32:74:0.351:2	./.	./.	0/1:40,45:32:85:0.529:2	./.	./.
chr9	5557672	rs7854303	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,176:33:176:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,174:33:174:1.00:2	0/1:0,138:32:138:1.00:2	0/1:0,171:32:173:1.00:2	0/1:0,137:32:137:1.00:2	0/1:2,160:32:162:0.988:2	0/1:0,186:33:186:1.00:2	0/1:0,174:32:174:1.00:2	0/1:0,190:33:190:1.00:2
chr9	5557708	rs7854413	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,8:31:18:0.444:2	./.	./.	0/1:63,68:32:131:0.519:2	./.	./.	./.	./.	./.
chr9	5732483	rs7850299	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:32:13:0.308:2	./.	./.	0/1:46,61:32:107:0.570:2	./.	0/1:0,101:32:101:1.00:2	./.	./.	0/1:79,53:33:132:0.402:2
chr9	5762600	rs3739646	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,60:32:123:0.492:2
chr9	5772931	rs186010947	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,52:31:97:0.536:2	./.	./.	./.	./.	./.	./.	./.
chr9	5774225	rs3739648	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,119:29:120:0.992:2	./.	./.	0/1:45,34:30:79:0.430:2
chr9	5832728	rs1131727	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.
chr9	5892525	rs2233178	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,53:32:114:0.465:2	./.	./.	./.	./.	0/1:41,42:33:83:0.506:2	0/1:57,46:32:103:0.447:2
chr9	5920886	rs17579502	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,32:31:101:0.317:2	./.	./.	./.	./.	./.
chr9	5921028	rs139423434	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,14:32:27:0.519:2	./.	./.	./.
chr9	5921340	rs77465944	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,79:32:163:0.485:2	./.
chr9	5968416	rs3739649	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:33:16:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,14:33:14:1.00:2	0/1:1,14:32:15:0.933:2	0/1:0,17:33:17:1.00:2	0/1:6,13:33:19:0.684:2	0/1:0,21:33:21:1.00:2
chr9	5968637	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:34:76:0.053:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	5969249	rs10739080	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,71:33:72:0.986:2	0/1:0,35:32:35:1.00:2	./.	0/1:1,68:32:69:0.986:2	0/1:23,22:31:45:0.489:2	0/1:30,24:32:54:0.444:2	0/1:1,35:32:36:0.972:2	0/1:0,64:33:64:1.00:2	0/1:0,81:33:81:1.00:2	0/1:31,24:33:55:0.436:2	0/1:41,30:33:71:0.423:2
chr9	6007500	rs1061767	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,46:29:96:0.484:2	./.	./.	0/1:28,31:30:59:0.525:2
chr9	6007767	rs2773341	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.
chr9	6012601	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,4:32:133:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr9	6012734	rs106033	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:60,5:35:65:0.077:2	./.	0/1:0,9:33:9:1.00:2	./.	./.	0/1:40,26:32:66:0.394:2	./.	./.	./.	0/1:24,23:32:47:0.489:2	./.
chr9	6015011	rs343500	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,18:30:37:0.486:2	./.
chr9	6015099	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	6253571	rs10975519	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,7:32:10:0.700:2	0/1:76,40:32:116:0.345:2	0/1:28,42:31:70:0.600:2	./.	0/1:31,45:32:76:0.592:2	0/1:63,71:32:134:0.530:2	./.	./.	0/1:50,57:32:107:0.533:2
chr9	6328947	rs3847262	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:33:80:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,116:32:116:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,116:32:116:1.00:2	0/1:0,107:33:107:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,108:32:108:1.00:2
chr9	6329888	rs898673	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:32:53:1.00:2	0/1:1,30:32:31:0.968:2	0/1:0,8:32:8:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,49:32:50:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,84:33:84:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,101:33:101:1.00:2
chr9	6330380	rs1052335	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,60:30:112:0.536:2	./.	./.	0/1:40,44:30:84:0.524:2	./.	./.	./.	./.
chr9	6330948	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.
chr9	6486907	rs199507879	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:137,15:17:152:0.099:2	./.	./.	0/1:158,17:12:175:0.097:2	./.	./.	./.	./.	./.	0/1:136,16:14:152:0.105:2	0/1:148,15:13:163:0.092:2
chr9	6486916	rs145394234	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,58:30:142:0.408:2	./.	./.	./.
chr9	6506038	rs33962342	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,9:31:19:0.474:2	./.	./.	./.	./.	0/1:67,63:32:130:0.485:2	./.	./.	0/1:90,70:31:160:0.438:2
chr9	6534760	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,4:30:54:0.074:2	./.	./.	./.	./.	./.	./.	./.
chr9	6536172	rs144937031	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,6:30:147:0.041:2	./.	./.	./.	./.	./.
chr9	6550835	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:31:114:0.035:2	./.	./.	./.	./.	./.
chr9	6587205	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,5:33:139:0.036:2	./.	./.	./.	./.	./.	./.	./.
chr9	6589230	rs121964976	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,39:31:74:0.527:2	./.	./.	./.	./.	./.	./.	./.
chr9	6592159	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,3:32:36:0.083:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	6610326	rs35374927	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,63:32:129:0.488:2	./.	0/1:81,72:32:153:0.471:2	./.	./.	0/1:70,63:33:133:0.474:2	0/1:75,49:32:124:0.395:2	0/1:59,52:33:111:0.468:2
chr9	6645251	rs12341698	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,18:31:37:0.486:2	0/1:9,13:31:22:0.591:2	./.	./.	./.	./.	./.	./.	0/1:30,55:31:85:0.647:2	./.	0/1:2,55:29:57:0.965:2
chr9	6748784	rs10975818	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,10:31:17:0.588:2	./.	0/1:10,13:31:23:0.565:2	0/1:20,13:32:33:0.394:2
chr9	6849518	rs61750314	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,25:32:62:0.403:2	./.	./.	./.	./.	./.	./.
chr9	6981041	rs10975949	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,25:32:67:0.373:2
chr9	6984172	rs10815499	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,58:31:114:0.509:2	./.	0/1:59,51:32:110:0.464:2	./.	./.
chr9	6984236	rs2296067	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,11:31:23:0.478:2	./.	./.	0/1:2,105:31:107:0.981:2	./.	./.	0/1:137,4:33:141:0.028:2	0/1:45,53:32:98:0.541:2	./.
chr9	7013874	rs35006356	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,12:29:32:0.375:2	./.	./.	./.	./.	./.	./.
chr9	7013909	rs35389625	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,14:32:43:0.326:2	./.	0/1:33,41:33:74:0.554:2	./.	./.
chr9	7046901	rs1407856	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:39,38:32:77:0.494:2	0/1:28,28:32:56:0.500:2	0/1:0,10:32:10:1.00:2	./.	./.	0/1:0,83:32:83:1.00:2	./.	./.	./.	./.	./.
chr9	7046917	rs1417290	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,22:32:44:0.500:2	./.	./.	0/1:33,26:32:59:0.441:2	./.
chr9	7076463	rs1570512	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:13,16:32:29:0.552:2	0/1:6,14:31:20:0.700:2	0/1:0,3:31:3:1.00:2	./.	0/1:4,10:32:14:0.714:2	0/1:0,37:31:37:1.00:2	./.	./.	0/1:22,22:33:44:0.500:2	0/1:23,9:32:32:0.281:2	0/1:38,19:32:57:0.333:2
chr9	7103816	rs3763651	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:54,49:32:103:0.476:2	0/1:22,29:32:51:0.569:2	0/1:3,10:31:13:0.769:2	./.	0/1:109,81:31:190:0.426:2	./.	0/1:68,81:32:149:0.544:2	0/1:0,159:31:159:1.00:2	0/1:80,56:32:136:0.412:2	./.	0/1:58,43:31:101:0.426:2
chr9	7169833	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2
chr9	7170006	rs7022348	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,67:31:67:1.00:2	0/1:31,14:31:45:0.311:2	./.	./.	./.	0/1:50,32:31:82:0.390:2	./.	./.
chr9	7174673	rs913588	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,33:32:62:0.532:2	0/1:16,17:31:33:0.515:2	./.	./.	./.	0/1:37,28:30:65:0.431:2	0/1:2,39:31:41:0.951:2	0/1:41,22:30:63:0.349:2	0/1:45,39:31:84:0.464:2	0/1:1,50:31:51:0.980:2	0/1:51,56:31:107:0.523:2
chr9	7799606	rs14059	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:12,18:30:30:0.600:2	./.	./.	./.	0/1:15,14:29:29:0.483:2	./.	0/1:0,16:28:16:1.00:2	./.	./.	0/1:9,4:32:13:0.308:2	./.
chr9	7799653	rs1127430	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:9,9:25:18:0.500:2	0/1:3,3:31:6:0.500:2	./.	./.	0/1:6,12:28:18:0.667:2	./.	0/1:0,9:28:9:1.00:2	./.	./.	0/1:4,3:30:7:0.429:2	./.
chr9	8319964	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:32:75:0.053:2	./.
chr9	8389364	rs2279776	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,22:33:68:0.324:2	0/1:29,22:32:51:0.431:2	0/1:0,10:33:10:1.00:2	0/1:42,44:33:86:0.512:2	0/1:35,31:32:66:0.470:2	./.	0/1:34,45:32:79:0.570:2	0/1:60,35:33:95:0.368:2	./.	0/1:0,81:33:81:1.00:2	0/1:0,103:33:103:1.00:2
chr9	8454566	rs7031287	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,10:33:19:0.526:2	0/1:12,5:33:17:0.294:2	./.	0/1:9,18:32:27:0.667:2	0/1:0,5:32:5:1.00:2	0/1:0,20:32:20:1.00:2	./.	./.	./.	./.	./.
chr9	8465598	rs2281747	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:76,67:31:143:0.469:2	0/1:48,36:32:84:0.429:2	./.	0/1:82,63:32:145:0.434:2	0/1:71,59:32:130:0.454:2	./.	./.	./.	./.	./.	./.
chr9	8485834	rs35929428	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,33:31:71:0.465:2	./.	./.	./.	./.	0/1:66,40:33:106:0.377:2	./.	0/1:0,69:32:69:1.00:2
chr9	8486143	rs370631792	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,61:31:124:0.492:2	./.	./.	./.	./.	./.
chr9	8492902	rs12346849	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:106,85:32:191:0.445:2	./.	./.	./.	./.	./.	./.
chr9	8518052	rs10977171	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,75:32:196:0.383:2	./.	./.	./.	./.	./.
chr9	8518143	rs7026388	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,72:29:152:0.474:2	./.	./.	./.	./.	./.	./.
chr9	8523519	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2
chr9	8733761	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:33:84:0.048:2
chr9	12694255	rs34509359	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,42:31:91:0.462:2	./.	./.	./.
chr9	12698471	rs35866166	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,53:32:100:0.530:2	./.	./.	./.
chr9	12775889	rs3750501	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,8:27:8:1.00:2	0/1:0,4:27:4:1.00:2	0/1:0,3:29:3:1.00:2	./.	0/1:0,11:27:11:1.00:2	./.	./.	0/1:3,3:25:6:0.500:2	0/1:0,5:28:5:1.00:2	0/1:0,5:26:6:1.00:2	./.
chr9	12821754	rs140682520	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,11:31:24:0.458:2	./.	./.	./.	./.	./.
chr9	13112116	rs10809904	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:31:50:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,40:30:40:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,54:33:54:1.00:2	0/1:1,37:32:38:0.974:2	0/1:0,56:31:56:1.00:2
chr9	13121772	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:32:146:0.027:2	./.
chr9	13140137	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,33:32:71:0.465:2
chr9	13150531	rs10756457	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:28,23:34:51:0.451:2	0/1:8,11:33:19:0.579:2	0/1:3,3:33:6:0.500:2	./.	0/1:31,14:33:45:0.311:2	0/1:37,18:33:55:0.327:2	./.	0/1:36,26:33:62:0.419:2	0/1:23,20:34:43:0.465:2	0/1:13,24:33:37:0.649:2	0/1:34,19:33:53:0.358:2
chr9	13176312	rs2274856	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,9:32:14:0.643:2	./.	0/1:41,31:32:72:0.431:2	0/1:44,39:32:83:0.470:2	./.	0/1:43,27:32:72:0.386:2	./.	./.	0/1:77,78:32:155:0.503:2
chr9	13188803	rs192227753	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,10:32:39:0.263:2	./.	./.	./.	./.	./.	./.
chr9	13219570	rs13297480	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:121,73:30:194:0.376:2	0/1:107,85:30:192:0.443:2	./.	./.	./.	./.	./.
chr9	13928011	rs2382426	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:53,49:33:102:0.480:2	0/1:34,24:32:58:0.414:2	./.	./.	./.	./.	./.	0/1:32,22:31:54:0.407:2	./.	./.	0/1:60,72:32:132:0.545:2
chr9	13928028	rs2382427	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:51,53:33:104:0.510:2	0/1:30,33:32:63:0.524:2	0/1:10,3:31:13:0.231:2	./.	0/1:38,6:31:44:0.136:2	0/1:0,65:32:65:1.00:2	./.	0/1:2,47:32:49:0.959:2	0/1:50,33:33:83:0.398:2	./.	0/1:60,78:32:138:0.565:2
chr9	14120469	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,68:32:132:0.515:2	./.
chr9	14306011	rs75551109	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,10:33:29:0.345:2	./.	./.	./.
chr9	14662260	rs17215796	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:33:12:0.250:2	./.	./.	./.	0/1:66,32:33:98:0.327:2	0/1:1,106:33:108:0.991:2	./.	./.	0/1:64,59:31:123:0.480:2
chr9	14720357	rs7036635	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.	0/1:19,22:32:41:0.537:2	./.	./.	./.	./.
chr9	14720361	rs17289263	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,16:33:39:0.410:2	./.	./.	./.	./.
chr9	14722477	rs3747532	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,5:32:17:0.294:2	./.	./.	./.	0/1:1,140:33:141:0.993:2	./.	./.	0/1:70,52:32:122:0.426:2	./.
chr9	14722616	rs10115703	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,6:30:21:0.286:2	./.	./.	./.	./.
chr9	14737506	rs10961689	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,59:33:113:0.522:2	0/1:23,35:33:58:0.603:2	0/1:0,7:32:7:1.00:2	0/1:0,87:33:87:1.00:2	0/1:42,43:32:85:0.506:2	0/1:0,96:32:96:1.00:2	0/1:1,125:33:126:0.992:2	0/1:0,103:32:103:1.00:2	0/1:1,105:33:106:0.991:2	0/1:65,51:32:116:0.440:2	0/1:0,106:32:106:1.00:2
chr9	14747412	rs4741426	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:52,71:32:123:0.577:2	0/1:36,29:31:65:0.446:2	./.	./.	./.	./.	./.	./.	./.	0/1:50,52:32:102:0.510:2	./.
chr9	14770658	rs17219005	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,46:30:117:0.393:2	./.	./.	0/1:64,37:30:101:0.366:2	0/1:61,48:30:109:0.440:2	0/1:63,47:31:110:0.427:2	./.	./.
chr9	14775853	rs1032474	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,69:29:160:0.431:2	0/1:64,34:29:98:0.347:2	0/1:1,19:29:20:0.950:2	0/1:91,73:29:164:0.445:2	0/1:1,122:29:123:0.992:2	0/1:0,182:29:182:1.00:2	0/1:0,135:30:135:1.00:2	0/1:0,157:29:157:1.00:2	0/1:103,76:29:179:0.425:2	0/1:80,62:29:142:0.437:2	0/1:95,71:29:166:0.428:2
chr9	14775859	rs10733289	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:95,76:32:171:0.444:2	0/1:63,39:32:102:0.382:2	./.	0/1:89,78:31:167:0.467:2	./.	./.	0/1:5,143:31:148:0.966:2	0/1:100,75:30:175:0.429:2	0/1:110,76:31:186:0.409:2	0/1:89,77:32:166:0.464:2	./.
chr9	14776027	rs2131880	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,39:32:82:0.476:2	./.	0/1:101,4:31:105:0.038:2	0/1:54,55:32:109:0.505:2	./.	0/1:69,44:32:113:0.389:2	./.	./.
chr9	14776140	rs10961700	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,55:29:137:0.401:2	./.	./.	./.
chr9	14789071	rs200716268	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:32:5:0.800:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	14797516	rs7025814	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,12:32:23:0.522:2	./.	./.	./.	./.	0/1:48,46:32:94:0.489:2	./.	./.	./.
chr9	14801687	rs10738380	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:86,92:29:180:0.517:2	0/1:48,51:29:100:0.515:2	./.	./.	./.	./.	0/1:113,71:30:185:0.386:2	./.	./.	./.	./.
chr9	14801710	rs35870000	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,27:30:41:0.659:2	0/1:106,84:30:190:0.442:2	0/1:113,82:31:195:0.421:2	0/1:103,82:30:186:0.443:2	./.	./.	0/1:107,84:32:191:0.440:2	0/1:0,188:32:188:1.00:2	0/1:97,87:31:184:0.473:2
chr9	14801738	rs16932300	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,71:32:153:0.464:2	./.	./.	./.	./.	./.
chr9	14816829	rs7041710	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,12:31:19:0.632:2	./.	0/1:9,11:32:20:0.550:2	0/1:19,9:32:28:0.321:2	0/1:18,18:33:36:0.500:2	./.	./.
chr9	14819370	rs7023244	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,38:31:73:0.521:2	0/1:22,18:31:40:0.450:2	./.	./.	./.	0/1:47,36:31:83:0.434:2	0/1:59,46:31:105:0.438:2	./.	./.	./.	0/1:39,35:32:74:0.473:2
chr9	14824088	rs7864984	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:33:4:0.750:2	./.	./.	./.	0/1:32,3:32:35:0.086:2	./.	./.	./.	./.
chr9	14824799	rs12236053	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,32:31:58:0.552:2	./.	0/1:45,21:32:66:0.318:2	0/1:36,36:30:72:0.500:2	0/1:48,40:33:88:0.455:2	./.	./.
chr9	14846036	rs2779500	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,55:32:119:0.462:2	0/1:43,34:32:77:0.442:2	0/1:14,7:33:21:0.333:2	0/1:0,158:33:158:1.00:2	0/1:101,59:32:160:0.369:2	./.	0/1:80,75:32:155:0.484:2	0/1:80,86:33:166:0.518:2	0/1:82,66:33:148:0.446:2	0/1:0,99:33:99:1.00:2	0/1:55,66:33:121:0.545:2
chr9	14859356	rs10961757	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:33,44:33:77:0.571:2	0/1:27,24:32:51:0.471:2	0/1:5,4:33:9:0.444:2	./.	0/1:31,22:30:53:0.415:2	./.	./.	0/1:41,36:32:77:0.468:2	./.	./.	./.
chr9	15188106	rs1407977	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,38:28:93:0.409:2	0/1:24,25:28:49:0.510:2	0/1:8,5:27:13:0.385:2	0/1:65,35:29:100:0.350:2	0/1:40,31:27:71:0.437:2	0/1:0,91:29:91:1.00:2	0/1:0,63:28:63:1.00:2	0/1:44,44:28:88:0.500:2	./.	./.	0/1:83,47:28:130:0.362:2
chr9	15444615	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,4:33:27:0.148:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	15447095	rs184190195	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:30:12:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	15459821	rs3087653	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,32:33:62:0.516:2	0/1:22,25:33:47:0.532:2	./.	./.	./.	0/1:52,44:33:96:0.458:2	./.	./.	0/1:65,40:33:105:0.381:2	./.	./.
chr9	15474055	rs199723617	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,4:31:102:0.039:2	./.	./.	./.	./.	./.	./.
chr9	15474067	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,4:32:101:0.040:2	./.	./.	./.	./.	./.	./.
chr9	15478546	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:31:138:0.029:2	./.	0/1:145,5:30:150:0.033:2	./.	./.
chr9	15486870	rs2821529	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,25:30:70:0.357:2	./.	0/1:60,37:30:97:0.381:2	./.	./.	./.	./.
chr9	15571630	rs443563	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,26:32:52:0.500:2	./.	0/1:30,18:33:48:0.375:2	./.	./.	./.	./.
chr9	15578863	rs79217038	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,14:31:45:0.311:2	./.
chr9	15591372	rs4741510	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:59,41:32:100:0.410:2	0/1:31,12:31:43:0.279:2	0/1:10,3:30:13:0.231:2	./.	./.	0/1:44,43:30:87:0.494:2	0/1:43,28:31:72:0.394:2	0/1:50,41:31:91:0.451:2	0/1:1,96:32:97:0.990:2	0/1:41,44:31:85:0.518:2	./.
chr9	15744429	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,8:19:74:0.108:2	./.
chr9	15777785	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:32:59:0.068:2
chr9	15784560	rs55780067	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,41:28:69:0.594:2	./.	./.	0/1:32,37:30:69:0.536:2	./.	./.
chr9	15784631	rs1539172	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,25:33:41:0.610:2	0/1:14,17:33:31:0.548:2	0/1:1,3:34:4:0.750:2	0/1:18,28:33:46:0.609:2	0/1:23,22:32:45:0.489:2	0/1:33,30:32:63:0.476:2	./.	0/1:21,22:33:43:0.512:2	./.	0/1:18,22:31:40:0.550:2	0/1:0,44:33:44:1.00:2
chr9	16419519	rs117452684	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,28:30:64:0.444:2	./.	./.	./.	./.	./.	./.	./.
chr9	16419554	rs144217211	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,36:30:58:0.621:2
chr9	16435714	rs3739715	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,37:32:88:0.420:2	./.
chr9	16436244	rs138108118	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:32:159:0.025:2	./.	./.
chr9	16436647	rs117470554	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:77,53:31:130:0.408:2	0/1:38,41:30:79:0.519:2	./.	./.	./.	./.	./.	0/1:82,86:30:168:0.512:2	./.	0/1:65,67:31:132:0.508:2	./.
chr9	16436952	rs148873573	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,63:32:113:0.558:2	./.	./.	./.	./.	./.
chr9	16685539	rs7046068	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:33:48:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,8:33:8:1.00:2	0/1:34,29:33:63:0.460:2	0/1:1,42:32:43:0.977:2	0/1:0,39:31:39:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,56:33:56:1.00:2	0/1:0,38:34:38:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,43:32:43:1.00:2
chr9	16738403	rs76485966	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,46:32:113:0.407:2
chr9	17135115	rs41306071	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:30:7:1.00:2	0/1:7,5:30:12:0.417:2	0/1:5,4:30:9:0.444:2	./.	0/1:3,7:29:10:0.700:2	0/1:9,10:30:19:0.526:2	./.	0/1:16,5:28:21:0.238:2	./.
chr9	17166876	rs190366799	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:30:4:0.750:2	./.	0/1:51,18:30:69:0.261:2	./.	./.	./.	./.	./.	./.
chr9	17273731	rs3808795	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:68,48:32:116:0.414:2	0/1:28,31:32:59:0.525:2	./.	0/1:44,62:32:106:0.585:2	./.	./.	./.	./.	./.	./.	./.
chr9	17340864	rs3808782	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,82:31:163:0.503:2	./.	./.	./.
chr9	17342383	rs1442527	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,32:31:32:1.00:2	0/1:46,45:31:91:0.495:2
chr9	17394536	rs7035276	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,6:32:6:1.00:2	0/1:0,5:33:5:1.00:2	./.	0/1:0,4:32:4:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,4:29:4:1.00:2	0/1:0,7:33:7:1.00:2	0/1:2,2:34:4:0.500:2	0/1:0,6:32:6:1.00:2	./.	./.
chr9	17394996	rs3739489	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,81:31:81:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,80:32:80:1.00:2	0/1:41,43:32:85:0.512:2	0/1:0,71:33:71:1.00:2	0/1:0,54:32:54:1.00:2	0/1:51,37:33:88:0.420:2
chr9	17409366	rs2780211	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:33:75:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,44:31:44:1.00:2	0/1:1,58:32:59:0.983:2	0/1:0,49:32:49:1.00:2	0/1:42,21:33:63:0.333:2	0/1:0,78:33:78:1.00:2	0/1:1,56:32:57:0.982:2	0/1:65,52:33:117:0.444:2
chr9	17484437	rs200652348	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,4:33:22:0.182:2	./.	./.	./.	./.	./.	./.
chr9	18504916	rs2277160	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,11:30:27:0.423:2	0/1:3,7:32:10:0.700:2	./.	0/1:7,10:33:17:0.588:2	0/1:7,5:29:12:0.417:2	0/1:4,9:32:13:0.692:2	0/1:0,18:31:18:1.00:2	0/1:6,5:31:11:0.455:2	0/1:7,12:32:19:0.632:2	0/1:0,11:33:11:1.00:2	0/1:0,15:30:15:1.00:2
chr9	18635952	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,61:33:147:0.415:2	./.	./.	./.	./.
chr9	18639300	rs776755	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,5:30:15:0.333:2	0/1:7,12:31:19:0.632:2	./.	./.	./.	./.	./.
chr9	18681821	rs13293151	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:30:6:1.00:2	0/1:40,28:29:68:0.412:2	0/1:0,54:29:54:1.00:2	./.	0/1:41,45:28:86:0.523:2	0/1:44,27:28:71:0.380:2	0/1:25,25:30:50:0.500:2	0/1:16,16:29:32:0.500:2	0/1:32,27:29:59:0.458:2
chr9	18706959	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,33:28:80:0.413:2	0/1:31,21:28:52:0.404:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	18775810	rs934472	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,39:30:41:0.951:2	0/1:0,28:31:28:1.00:2	./.	0/1:21,14:31:35:0.400:2	0/1:32,17:31:49:0.347:2	./.	./.	0/1:36,42:31:78:0.538:2	./.	./.	0/1:3,50:31:53:0.943:2
chr9	18776784	rs2060362	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,10:31:15:0.667:2	./.	./.	./.	./.	./.	./.
chr9	18776819	rs2060363	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,13:31:22:0.591:2	./.	./.	./.	./.	./.	./.
chr9	18776840	rs1549986	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,12:31:12:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,24:32:24:1.00:2	0/1:11,10:32:21:0.476:2	0/1:0,17:31:17:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,10:32:10:1.00:2
chr9	18776997	rs199730614	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,25:29:49:0.510:2	./.	./.
chr9	18777196	rs41268983	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,7:28:21:0.333:2	0/1:9,4:29:13:0.308:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	18777368	rs7033684	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:30:17:1.00:2	0/1:0,12:31:12:1.00:2	./.	0/1:0,8:31:8:1.00:2	0/1:5,7:30:12:0.583:2	0/1:6,6:31:12:0.500:2	./.	0/1:0,7:31:7:1.00:2	0/1:0,7:32:7:1.00:2	./.	0/1:0,11:30:11:1.00:2
chr9	18777422	rs45579937	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,19:30:31:0.613:2	0/1:9,10:29:19:0.526:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	18777601	rs138492683	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,50:31:99:0.505:2	./.	./.	./.	./.	./.
chr9	18777625	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:32:78:0.051:2	./.	./.	./.	./.	./.
chr9	18829952	rs41304755	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,30:31:70:0.435:2	0/1:18,20:31:38:0.526:2	./.	0/1:70,50:32:120:0.417:2	0/1:85,46:32:131:0.351:2	0/1:2,116:32:118:0.983:2	./.	0/1:50,38:32:88:0.432:2	./.	./.	./.
chr9	18829958	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:121,4:32:125:0.032:2	./.	./.	./.	./.	./.	./.
chr9	18887908	rs75551645	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,80:33:172:0.465:2
chr9	18950787	rs6475273	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,176:30:176:1.00:2	0/1:0,138:30:139:1.00:2	0/1:0,31:29:31:1.00:2	0/1:0,165:30:168:1.00:2	0/1:0,163:30:165:1.00:2	0/1:0,181:30:181:1.00:2	0/1:1,182:30:183:0.995:2	0/1:108,74:30:183:0.407:2	0/1:92,72:31:164:0.439:2	0/1:0,174:30:174:1.00:2	./.
chr9	18950895	rs7021572	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,81:32:164:0.494:2	0/1:56,56:32:112:0.500:2	0/1:0,24:32:25:1.00:2	0/1:82,81:33:163:0.497:2	0/1:0,153:32:153:1.00:2	0/1:0,160:32:160:1.00:2	0/1:1,105:33:106:0.991:2	0/1:85,62:33:147:0.422:2	0/1:84,77:34:161:0.478:2	0/1:0,165:33:165:1.00:2	./.
chr9	19032907	rs17810415	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,20:31:44:0.455:2	./.	0/1:2,7:33:9:0.778:2	0/1:11,17:33:28:0.607:2	0/1:7,10:34:17:0.588:2
chr9	19049665	rs145113359	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,26:32:55:0.473:2	./.	./.	./.	./.	./.	./.
chr9	19050413	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:120,4:33:124:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr9	19058425	rs11515236	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,34:31:73:0.466:2	0/1:40,14:32:54:0.259:2	0/1:0,7:31:7:1.00:2	0/1:42,21:32:63:0.333:2	0/1:27,11:32:38:0.289:2	0/1:41,11:31:52:0.212:2	0/1:0,27:32:27:1.00:2	./.	./.	0/1:1,44:32:45:0.978:2	./.
chr9	19058483	rs150852615	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,28:32:72:0.389:2	./.	0/1:71,39:32:110:0.355:2
chr9	19058743	rs10511670	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,17:33:44:0.386:2	./.	0/1:122,72:32:194:0.371:2	0/1:97,89:32:186:0.478:2	0/1:109,84:33:193:0.435:2	./.	./.	0/1:110,80:33:190:0.421:2	./.
chr9	19058821	rs10511671	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,15:29:39:0.385:2	./.	0/1:67,54:28:122:0.446:2	0/1:75,77:29:152:0.507:2	0/1:55,52:29:107:0.486:2	./.	./.	0/1:88,68:30:156:0.436:2	./.
chr9	19058921	rs62622380	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,79:33:183:0.432:2	./.	0/1:121,72:33:193:0.373:2
chr9	19058934	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,12:31:177:0.068:2	./.	./.	./.	./.
chr9	19060197	rs41269003	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,11:30:28:0.393:2	./.	./.	0/1:31,29:31:60:0.483:2	./.
chr9	19063108	rs13302748	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:50,42:33:92:0.457:2	0/1:33,34:32:67:0.507:2	./.	0/1:35,35:32:70:0.500:2	0/1:37,24:32:61:0.393:2	0/1:46,36:31:82:0.439:2	./.	0/1:32,31:32:63:0.492:2	./.	./.	0/1:96,69:33:165:0.418:2
chr9	19063181	rs375714104	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:59,4:30:63:0.063:2	./.	./.	./.	0/1:84,4:31:88:0.045:2	./.	./.	./.	./.	0/1:151,4:31:156:0.026:2
chr9	19070237	rs143282588	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,4:32:93:0.043:2	./.	./.	./.	./.	./.	./.
chr9	19070296	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,4:30:65:0.062:2	./.	./.	./.	./.	./.	./.
chr9	19076673	rs13286328	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:74,57:30:131:0.435:2	0/1:35,34:30:69:0.493:2	./.	0/1:103,80:30:183:0.437:2	0/1:72,33:28:105:0.314:2	0/1:75,73:30:148:0.493:2	./.	0/1:100,85:30:185:0.459:2	./.	./.	0/1:92,88:29:180:0.489:2
chr9	19080497	rs372020124	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:32:195:0.021:2	./.	./.	0/1:194,6:32:200:0.030:2	./.
chr9	19080549	rs149772323	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,15:32:186:0.081:2	0/1:163,10:31:175:0.058:2	./.	./.	./.
chr9	19083006	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:79,6:30:85:0.071:2	./.	0/1:143,8:30:151:0.053:2	0/1:100,8:30:108:0.074:2	0/1:128,21:30:149:0.141:2	./.	./.	0/1:120,15:31:135:0.111:2	./.	0/1:146,8:31:154:0.052:2
chr9	19087154	rs7875404	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:61,44:33:105:0.419:2	0/1:24,15:32:39:0.385:2	./.	./.	./.	./.	0/1:48,42:32:90:0.467:2	./.	./.	0/1:37,37:33:74:0.500:2	./.
chr9	19093287	rs41269011	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,66:33:148:0.446:2	./.	0/1:74,64:33:138:0.464:2
chr9	19094360	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:168,5:30:173:0.029:2	./.	./.	./.	./.	0/1:168,6:31:174:0.034:2	./.	./.
chr9	19094396	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.	./.	./.	./.	0/1:113,6:32:119:0.050:2	./.	./.
chr9	19116543	rs2229536	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,76:31:198:0.384:2	./.	./.	0/1:108,82:31:190:0.432:2	./.
chr9	19119674	rs35568725	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,35:32:84:0.417:2	./.	./.	0/1:32,34:33:66:0.515:2	./.
chr9	19121163	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,3:34:42:0.071:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	19126281	rs2228416	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,43:29:92:0.467:2	0/1:42,16:30:58:0.276:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	19290794	rs41269019	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,9:32:40:0.225:2	./.	./.	./.	./.	./.	./.
chr9	19341045	rs928128	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,10:30:18:0.556:2	./.	./.	./.	0/1:6,114:29:120:0.950:2	./.	0/1:88,71:31:159:0.447:2	0/1:55,66:30:121:0.545:2	./.
chr9	19346710	rs17818730	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,26:32:59:0.441:2	./.	./.	0/1:41,35:31:76:0.461:2
chr9	19380200	rs184998286	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,64:31:120:0.533:2	./.	./.	./.	./.
chr9	19380239	rs41270113	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,35:29:82:0.427:2	0/1:2,65:29:67:0.970:2	./.	./.	0/1:19,26:28:45:0.578:2	./.
chr9	19423972	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:32:148:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	19450627	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,5:29:184:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	19576928	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:142,4:32:146:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr9	19576949	rs2383101	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,106:29:106:1.00:2	0/1:0,71:29:71:1.00:2	0/1:0,19:30:19:1.00:2	0/1:1,184:29:185:0.995:2	0/1:0,168:29:168:1.00:2	0/1:103,93:29:196:0.474:2	0/1:112,80:29:192:0.417:2	0/1:3,171:29:174:0.983:2	0/1:0,157:30:157:1.00:2	0/1:1,164:29:165:0.994:2	0/1:0,165:29:165:1.00:2
chr9	19622268	rs4977308	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,25:29:54:0.463:2	0/1:19,20:29:39:0.513:2	0/1:2,5:28:7:0.714:2	0/1:0,76:30:76:1.00:2	0/1:34,26:28:60:0.433:2	0/1:49,28:29:77:0.364:2	0/1:44,32:29:76:0.421:2	0/1:69,28:29:97:0.289:2	0/1:45,31:30:76:0.408:2	0/1:2,56:29:58:0.966:2	0/1:0,32:30:32:1.00:2
chr9	20414376	rs1761445	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,12:31:20:0.600:2	./.	./.	./.	./.
chr9	20764870	rs10511687	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:43,27:33:70:0.386:2	0/1:15,22:32:37:0.595:2	./.	0/1:0,83:33:83:1.00:2	./.	0/1:45,23:31:68:0.338:2	./.	./.	./.	0/1:32,27:33:59:0.458:2	0/1:49,55:34:104:0.529:2
chr9	20866974	rs7875872	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:32:56:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,96:33:96:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,64:33:64:1.00:2	0/1:1,125:32:126:0.992:2	0/1:0,100:34:100:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,107:33:107:1.00:2
chr9	20916865	rs60488560	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,50:33:84:0.595:2	./.	./.	0/1:68,38:33:106:0.358:2	./.	./.	./.
chr9	20948311	rs35470485	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:32,44:32:76:0.579:2	0/1:10,10:32:20:0.500:2	./.	0/1:43,30:32:73:0.411:2	./.	./.	./.	./.	./.	./.	./.
chr9	20948352	rs148495154	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,33:31:77:0.429:2	./.	./.	./.	./.	./.	./.
chr9	20953049	rs3206852	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:24,37:31:61:0.607:2	0/1:16,17:31:33:0.515:2	./.	./.	./.	./.	0/1:24,26:32:50:0.520:2	0/1:25,26:32:51:0.510:2	0/1:40,31:33:71:0.437:2	0/1:24,33:31:57:0.579:2	0/1:43,42:31:85:0.494:2
chr9	20986339	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,3:30:23:0.130:2	./.	./.	./.	./.
chr9	20988426	rs4977881	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,61:32:62:0.984:2	0/1:0,36:30:36:1.00:2	./.	0/1:49,34:32:83:0.410:2	0/1:21,15:30:36:0.417:2	0/1:23,34:30:57:0.596:2	0/1:2,43:31:45:0.956:2	0/1:25,24:32:49:0.490:2	0/1:61,24:32:85:0.282:2	0/1:46,28:32:74:0.378:2	0/1:50,46:32:96:0.479:2
chr9	20990374	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,32:30:67:0.478:2	./.	./.	./.
chr9	21029330	rs2298260	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,48:34:101:0.480:2	0/1:37,33:32:70:0.471:2	0/1:6,12:33:18:0.667:2	0/1:59,52:33:111:0.468:2	0/1:41,25:32:66:0.379:2	0/1:53,52:33:105:0.495:2	0/1:36,23:32:59:0.390:2	./.	./.	./.	./.
chr9	21077716	rs1051922	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,28:31:61:0.459:2	0/1:21,15:32:36:0.417:2	./.	0/1:48,50:31:99:0.510:2	0/1:33,33:30:66:0.500:2	0/1:29,36:31:65:0.554:2	0/1:1,49:31:50:0.980:2	0/1:65,38:31:103:0.369:2	./.	./.	./.
chr9	21077799	rs149697542	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,40:32:67:0.597:2	./.	./.	./.
chr9	21141670	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,4:32:116:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr9	21141892	rs182862961	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,9:32:21:0.429:2	./.	./.	./.	./.	./.	./.
chr9	21166435	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,5:29:65:0.077:2	./.	./.	./.	./.	./.	0/1:118,10:28:128:0.078:2
chr9	21166438	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,6:30:66:0.091:2	./.	./.	./.	./.	./.	0/1:121,10:31:131:0.076:2
chr9	21166515	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,6:30:171:0.035:2	./.
chr9	21166520	rs140583107	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,7:33:190:0.037:2	./.
chr9	21166552	rs199902055	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,7:31:188:0.037:2	./.
chr9	21187003	.	C	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,5:33:195:0.026:2	0/1:142,14:33:156:0.090:2	0/1:186,8:32:194:0.041:2	./.	0/1:172,26:32:198:0.131:2	0/1:179,17:33:196:0.087:2	0/1:167,30:32:197:0.152:2	0/1:172,20:32:193:0.104:2
chr9	21187069	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:138,8:30:146:0.055:2	./.	./.	./.	./.	./.	./.
chr9	21187121	rs113045626	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,7:32:30:0.233:2	./.	./.	0/1:134,64:31:198:0.323:2	./.	0/1:103,91:31:194:0.469:2	0/1:110,80:32:190:0.421:2	0/1:108,60:31:168:0.357:2	./.
chr9	21187146	rs201186279	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,12:32:170:0.071:2	./.	./.	./.	./.
chr9	21187177	rs200841604	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:155,34:31:189:0.180:2	./.	./.	./.	./.	./.	0/1:174,22:32:196:0.112:2
chr9	21187197	rs200551386	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,16:31:186:0.086:2	./.	0/1:161,17:32:178:0.096:2	0/1:150,20:33:170:0.118:2	0/1:163,16:32:179:0.089:2	./.
chr9	21187311	rs1062571	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:103,66:31:170:0.391:2	0/1:43,41:31:84:0.488:2	0/1:0,22:30:22:1.00:2	./.	0/1:10,99:30:109:0.908:2	0/1:121,61:30:182:0.335:2	0/1:81,43:31:124:0.347:2	0/1:90,93:30:183:0.508:2	0/1:16,147:31:163:0.902:2	0/1:3,129:31:132:0.977:2	0/1:110,71:30:182:0.392:2
chr9	21187326	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,5:32:185:0.027:2
chr9	21187344	rs142712065	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2
chr9	21187434	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,6:27:192:0.031:2	./.	./.
chr9	21187439	rs199767373	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,5:31:189:0.026:2	./.	0/1:181,8:31:189:0.042:2	0/1:175,9:30:184:0.049:2	0/1:171,6:32:177:0.034:2	0/1:189,6:32:195:0.031:2
chr9	21187471	rs113055208	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,6:30:191:0.031:2	./.	0/1:179,9:30:188:0.048:2	0/1:185,7:26:193:0.036:2	0/1:171,12:31:183:0.066:2	0/1:188,6:32:194:0.031:2
chr9	21187507	rs1062562	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,6:29:193:0.031:2	./.	0/1:176,8:30:185:0.043:2	./.
chr9	21201749	rs372572608	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:107,4:31:111:0.036:2	./.	./.	./.	./.	./.	./.
chr9	21201780	rs149946231	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,8:30:169:0.048:2	./.	./.	./.	./.
chr9	21201811	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:176,11:31:187:0.059:2	./.	./.	./.	./.	./.	0/1:189,5:30:194:0.026:2
chr9	21201831	rs143268397	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,10:32:181:0.055:2	0/1:168,5:33:173:0.029:2	0/1:182,12:32:194:0.062:2	./.
chr9	21201934	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,7:29:153:0.046:2	./.	./.	./.
chr9	21201979	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:120,5:32:125:0.040:2	./.	./.	./.	./.	./.	./.	./.	0/1:138,5:34:143:0.035:2	./.	./.
chr9	21202040	rs200751233	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,6:33:97:0.062:2	./.	0/1:86,6:30:92:0.065:2
chr9	21202073	rs76903863	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,7:29:97:0.072:2	./.	0/1:73,6:31:79:0.076:2
chr9	21202105	rs75174189	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,6:33:99:0.061:2	./.	0/1:72,5:28:77:0.065:2
chr9	21206569	rs148033880	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,14:32:67:0.215:2	./.	0/1:121,19:32:140:0.136:2	0/1:175,20:32:195:0.103:2	./.	0/1:180,19:32:199:0.095:2	0/1:165,33:33:198:0.167:2	0/1:177,22:33:199:0.111:2	0/1:170,26:33:196:0.133:2
chr9	21206627	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,5:31:174:0.029:2	./.	./.	./.	./.	./.
chr9	21206633	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:132,4:30:136:0.029:2	./.	./.	./.	./.	./.	./.
chr9	21206687	.	T	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,18:31:189:0.095:2	./.	0/1:169,22:31:191:0.115:2	0/1:177,21:32:198:0.106:2	0/1:159,15:31:174:0.086:2	./.
chr9	21206712	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,39:31:178:0.219:2	./.	./.	./.	./.
chr9	21206743	rs112963053	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:138,28:31:166:0.169:2	./.	./.	./.	./.	./.	0/1:139,51:32:190:0.268:2
chr9	21206763	rs56035072	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,28:31:162:0.173:2	./.	0/1:139,27:31:166:0.163:2	0/1:143,30:32:173:0.173:2	0/1:139,34:32:173:0.197:2	./.
chr9	21206916	rs28368145	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,35:30:75:0.467:2	./.	./.	./.	./.	./.	0/1:78,71:30:149:0.477:2
chr9	21206919	rs28368144	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,35:28:74:0.473:2	./.	./.	./.	./.	./.	0/1:81,71:29:152:0.467:2
chr9	21207000	rs10113875	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:87,12:30:99:0.121:2	0/1:98,27:31:125:0.216:2	./.	0/1:106,19:28:125:0.152:2	0/1:95,38:29:133:0.286:2	0/1:119,19:29:139:0.138:2	0/1:115,26:29:141:0.184:2
chr9	21207005	rs10113876	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,3:34:17:0.176:2	./.	0/1:94,12:32:106:0.113:2	0/1:103,29:33:132:0.220:2	./.	0/1:113,20:32:133:0.150:2	0/1:103,37:33:140:0.264:2	0/1:120,25:32:145:0.172:2	0/1:111,23:32:134:0.172:2
chr9	21207031	rs10117060	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,10:33:27:0.370:2	./.	0/1:124,33:32:157:0.210:2	0/1:114,29:31:143:0.203:2	./.	0/1:109,33:32:142:0.232:2	0/1:108,32:33:140:0.229:2	0/1:119,23:33:142:0.162:2	0/1:128,25:33:153:0.163:2
chr9	21207037	rs10119910	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,10:31:27:0.370:2	./.	0/1:123,40:31:163:0.245:2	0/1:111,29:31:140:0.207:2	./.	0/1:101,47:32:148:0.318:2	0/1:108,37:32:145:0.255:2	0/1:126,21:32:147:0.143:2	0/1:117,35:32:152:0.230:2
chr9	21216755	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.
chr9	21216782	rs371533595	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,6:32:169:0.036:2	./.
chr9	21216864	rs28368164	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,17:32:53:0.321:2	./.	./.	./.	./.	./.	0/1:71,30:33:101:0.297:2
chr9	21216908	rs28368163	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,8:31:46:0.174:2	./.	./.	./.	./.	./.	0/1:73,16:31:89:0.180:2
chr9	21216910	rs28368162	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,9:30:46:0.196:2	./.	./.	./.	./.	./.	0/1:72,16:31:88:0.182:2
chr9	21216934	rs28368161	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,12:30:47:0.255:2	./.	./.	./.	./.	./.	0/1:64,41:31:105:0.390:2
chr9	21217022	rs28368160	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,17:32:35:0.486:2	./.	./.	./.	./.	./.	0/1:49,55:32:105:0.529:2
chr9	21217111	rs28368159	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,23:31:39:0.590:2	./.	./.	./.	./.	./.	0/1:43,49:31:93:0.533:2
chr9	21217166	rs28368158	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,24:31:48:0.500:2	./.	./.	./.	./.	./.	0/1:45,55:31:100:0.550:2
chr9	21227622	rs9298814	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,9:33:34:0.265:2	./.	0/1:109,52:32:161:0.323:2	0/1:104,22:33:126:0.175:2	0/1:185,5:34:190:0.026:2	0/1:111,29:33:140:0.207:2	0/1:103,28:32:131:0.214:2	0/1:98,36:32:134:0.269:2	0/1:101,40:33:141:0.284:2
chr9	21227651	rs7025879	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,7:33:28:0.250:2	./.	0/1:83,32:31:115:0.278:2	0/1:108,28:31:136:0.206:2	./.	0/1:90,28:32:118:0.237:2	0/1:107,48:33:157:0.310:2	0/1:95,41:33:136:0.301:2	0/1:120,57:33:177:0.322:2
chr9	21227763	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:32:197:0.025:2	./.	./.	./.
chr9	21227821	rs141849715	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,29:32:179:0.162:2	./.	./.	./.	./.
chr9	21227942	rs10117962	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:30:12:0.250:2	./.	./.	0/1:50,27:30:77:0.351:2	./.	0/1:51,46:30:97:0.474:2	0/1:74,50:31:124:0.403:2	0/1:35,49:30:84:0.583:2	./.
chr9	21228040	rs12552812	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:30:11:0.727:2	./.	./.	0/1:83,50:29:133:0.376:2	./.	0/1:68,44:27:112:0.393:2	0/1:92,55:30:147:0.374:2	0/1:48,60:28:108:0.556:2	./.
chr9	21228182	rs10757201	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,16:31:55:0.291:2	./.	./.	0/1:125,69:31:194:0.356:2	./.	0/1:138,57:32:195:0.292:2	0/1:113,77:33:190:0.405:2	0/1:122,65:33:187:0.348:2	./.
chr9	21228183	rs10757202	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,16:32:55:0.291:2	./.	./.	0/1:126,70:32:196:0.357:2	./.	0/1:140,57:33:197:0.289:2	0/1:116,77:34:193:0.399:2	0/1:122,65:33:188:0.348:2	./.
chr9	21239388	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,7:32:190:0.037:2	0/1:153,6:32:159:0.038:2	0/1:185,5:33:190:0.026:2	./.	./.	./.
chr9	21239404	.	A	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:138,5:30:143:0.035:2	0/1:177,7:30:184:0.038:2	0/1:150,6:31:156:0.038:2	0/1:169,5:31:174:0.029:2	./.	./.	./.
chr9	21239407	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,6:29:182:0.033:2	./.	./.	./.	./.	./.
chr9	21239447	rs28383771	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,41:31:118:0.347:2	./.	./.	./.	./.	./.	./.
chr9	21239468	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,6:32:89:0.067:2	./.	./.	./.	./.	./.	0/1:176,9:34:185:0.049:2
chr9	21239504	rs140823004	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:130,5:32:135:0.037:2	0/1:52,8:32:60:0.133:2	./.	0/1:85,6:33:91:0.066:2	./.	./.	./.	0/1:148,13:33:161:0.081:2
chr9	21239519	rs370576305	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,3:33:49:0.061:2	./.	./.	./.	./.	./.	./.
chr9	21239572	rs148123186	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,4:32:37:0.108:2	./.	./.	0/1:76,4:32:80:0.050:2	./.	./.	./.
chr9	21239578	rs141933410	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,7:29:111:0.063:2
chr9	21239589	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,5:31:30:0.167:2	./.	./.	0/1:67,4:33:71:0.056:2	./.	./.	0/1:86,5:31:91:0.055:2
chr9	21239617	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:31:72:0.056:2
chr9	21304803	rs10757212	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,15:33:28:0.536:2	./.	0/1:71,50:32:121:0.413:2	0/1:92,56:31:148:0.378:2	./.	0/1:106,79:32:185:0.427:2	0/1:74,67:34:141:0.475:2	0/1:62,79:32:141:0.560:2	0/1:73,79:32:152:0.520:2
chr9	21304891	rs140371188	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,11:31:23:0.478:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	21305036	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:30:79:0.051:2	./.	./.	./.	./.
chr9	21305112	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:30:108:0.037:2	./.	./.
chr9	21333254	rs41270133	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,22:32:60:0.367:2	./.	./.	./.	./.	./.	0/1:41,41:32:82:0.500:2
chr9	21333709	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,25:32:52:0.481:2	./.
chr9	21334998	rs41270135	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:32:6:0.500:2
chr9	21335200	rs77356635	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,5:28:8:0.625:2	./.	./.	./.	./.	./.	0/1:1,3:29:4:0.750:2
chr9	21335404	rs7863385	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,16:30:31:0.516:2	./.	./.	./.	./.	./.	0/1:9,5:31:14:0.357:2
chr9	21350620	rs2988573	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,6:31:17:0.353:2	./.	./.	0/1:64,43:30:107:0.402:2	./.	0/1:54,40:31:94:0.426:2	0/1:79,46:32:125:0.368:2	0/1:72,43:31:115:0.374:2	./.
chr9	21350904	rs138085325	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,75:32:180:0.417:2	0/1:72,55:32:127:0.433:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	21368036	rs35000944	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,54:31:106:0.509:2	./.	./.	./.	./.	./.	0/1:85,65:32:150:0.433:2
chr9	21368097	rs653778	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,14:32:21:0.667:2	./.	./.	0/1:2,92:32:94:0.979:2	./.	0/1:88,62:32:150:0.413:2	0/1:104,61:33:165:0.370:2	0/1:84,42:32:126:0.333:2	./.
chr9	21368181	rs28383780	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,45:31:92:0.489:2	./.	./.	./.	./.	./.	0/1:80,85:32:166:0.515:2
chr9	21368609	rs643070	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,4:31:4:1.00:2	./.	./.	0/1:7,6:33:13:0.462:2	0/1:0,12:32:12:1.00:2	0/1:0,9:32:9:1.00:2	./.	0/1:2,6:31:8:0.750:2	0/1:0,9:34:9:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,8:32:8:1.00:2
chr9	21368927	rs641734	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,12:30:25:0.480:2	./.	./.	0/1:0,172:31:172:1.00:2	./.	0/1:100,88:31:188:0.468:2	0/1:101,91:32:192:0.474:2	0/1:66,63:31:129:0.488:2	./.
chr9	21409308	rs377683966	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,3:34:50:0.060:2
chr9	21409442	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:31:133:0.030:2	./.	./.	./.
chr9	21409901	rs10964982	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,41:30:113:0.363:2	./.	./.	./.	./.
chr9	21441053	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:27:195:0.026:2	./.
chr9	21441310	rs12685904	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,10:32:23:0.435:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	21481556	rs1125488	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,31:32:101:0.307:2	./.	./.	./.	./.
chr9	21482089	rs10125074	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:62,24:32:86:0.279:2	0/1:37,31:32:68:0.456:2	./.	0/1:58,32:31:90:0.356:2	0/1:31,14:30:45:0.311:2	0/1:57,36:31:93:0.387:2	0/1:35,11:32:46:0.239:2	0/1:47,29:30:76:0.382:2	0/1:0,83:33:83:1.00:2	0/1:0,57:32:57:1.00:2	0/1:1,94:32:95:0.989:2
chr9	21482181	rs2039380	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,14:32:23:0.609:2	./.	./.	./.	./.
chr9	21816758	rs7023954	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,29:32:65:0.446:2	0/1:23,8:31:31:0.258:2	./.	0/1:40,29:32:69:0.420:2	0/1:20,20:31:40:0.500:2	0/1:40,35:31:75:0.467:2	0/1:26,16:31:42:0.381:2	./.	./.	./.	0/1:62,43:32:105:0.410:2
chr9	21854740	rs10965163	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,63:30:109:0.578:2	./.	./.	./.	./.	./.	./.	./.
chr9	21968199	rs11515	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,48:30:49:0.980:2	0/1:0,11:30:11:1.00:2	0/1:3,3:33:6:0.500:2	0/1:0,34:29:34:1.00:2	0/1:16,15:30:31:0.484:2	0/1:24,23:31:47:0.489:2	0/1:24,9:31:33:0.273:2	0/1:0,43:29:43:1.00:2	0/1:19,26:30:45:0.578:2	0/1:0,37:30:37:1.00:2	0/1:45,27:30:72:0.375:2
chr9	21975017	rs3814960	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,4:31:4:1.00:2	0/1:0,4:32:4:1.00:2	./.	0/1:3,4:32:7:0.571:2	./.	./.	0/1:1,5:33:6:0.833:2	0/1:5,3:33:8:0.375:2	./.	./.	0/1:0,5:34:5:1.00:2
chr9	22029445	rs10965215	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,6:32:9:0.667:2	0/1:2,118:32:120:0.983:2	./.	./.	0/1:1,57:32:58:0.983:2	0/1:0,75:32:75:1.00:2	0/1:0,94:32:94:1.00:2	0/1:42,33:32:75:0.440:2	0/1:49,40:32:89:0.449:2
chr9	22447655	rs558612	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,13:31:27:0.481:2	0/1:9,6:33:15:0.400:2	./.	./.	0/1:14,18:27:34:0.563:2	0/1:13,14:31:28:0.519:2	./.	0/1:7,26:30:33:0.788:2	./.	./.	./.
chr9	22451638	rs186108346	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,51:32:94:0.543:2	./.	./.	./.	./.	./.	./.
chr9	24545052	rs187044520	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,44:33:95:0.463:2	./.	./.	./.	./.	./.	./.	./.
chr9	24545957	rs2772578	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,2:33:4:0.500:2	0/1:0,26:33:26:1.00:2	./.	0/1:1,34:32:35:0.971:2	0/1:10,28:33:38:0.737:2	0/1:0,48:32:48:1.00:2	./.	./.	./.
chr9	25677698	rs72631815	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:28:5:0.600:2	0/1:7,4:31:11:0.364:2	./.	./.	./.	0/1:0,8:29:8:1.00:2	./.	./.	./.
chr9	25677933	rs35110225	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:27:4:0.750:2	./.	./.	./.	./.	./.	./.	0/1:1,3:26:4:0.750:2	0/1:0,7:28:7:1.00:2	./.
chr9	25677953	rs34498078	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,4:28:4:1.00:2	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	0/1:0,2:30:2:1.00:2	./.	0/1:0,3:20:3:1.00:2	0/1:0,3:30:3:1.00:2	./.
chr9	25678026	rs373636066	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.
chr9	25678122	rs72631814	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:21:6:0.667:2	./.	./.	./.	./.	./.	./.	./.
chr9	25678639	rs61483294	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,17:31:38:0.447:2	./.	./.	./.	./.
chr9	25678640	rs10967034	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,18:32:35:0.514:2	0/1:10,10:33:20:0.500:2	./.	0/1:19,16:31:35:0.457:2	0/1:20,17:31:37:0.459:2	0/1:23,23:30:46:0.500:2	0/1:18,18:32:36:0.500:2	./.	0/1:13,17:32:30:0.567:2	./.	./.
chr9	25678797	rs34772164	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,3:25:7:0.429:2	0/1:3,5:30:8:0.625:2	./.	./.	0/1:5,9:32:14:0.643:2	0/1:7,3:30:10:0.300:2	./.
chr9	26842442	rs41271167	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,92:31:196:0.469:2	./.	./.	./.
chr9	26892654	rs3739548	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,5:30:19:0.263:2
chr9	26913886	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,16:33:26:0.615:2	./.	./.	./.	./.	./.
chr9	26923209	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:30:94:0.043:2	./.
chr9	26978170	rs10812505	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,35:32:94:0.372:2
chr9	26978259	rs11555693	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,25:31:59:0.424:2
chr9	26984277	rs12004404	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,20:32:28:0.714:2	./.	./.	./.
chr9	27009100	rs17694549	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,7:32:20:0.350:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	27062721	rs3429	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,14:32:14:1.00:2	./.	0/1:66,20:31:87:0.233:2	./.	0/1:48,52:32:100:0.520:2	./.	./.	./.	./.
chr9	27183463	rs682632	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:31:29:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,4:29:4:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,26:30:26:1.00:2	0/1:1,29:28:30:0.967:2	0/1:0,44:30:44:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,60:31:60:1.00:2
chr9	27190655	rs1334811	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,18:32:35:0.514:2	./.	./.	./.	./.
chr9	27197368	rs35357088	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,18:31:40:0.450:2	./.	./.	./.	./.	./.
chr9	27197486	rs35030851	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:32:11:0.455:2	./.	./.	./.	./.	0/1:51,56:32:107:0.523:2	./.	./.	./.
chr9	27202870	rs639225	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:89,69:29:158:0.437:2	0/1:45,25:27:70:0.357:2	0/1:8,4:30:12:0.333:2	0/1:109,58:28:167:0.347:2	./.	0/1:66,54:29:120:0.450:2	./.	0/1:144,6:28:150:0.040:2	./.	0/1:0,104:29:104:1.00:2	0/1:88,66:28:154:0.429:2
chr9	27203002	rs45563539	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:30:6:0.667:2	./.	./.	./.	./.	0/1:59,68:31:127:0.535:2	./.	./.	./.
chr9	27205021	rs542913	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,83:32:175:0.477:2	./.	./.	./.	./.	./.	0/1:80,51:32:131:0.389:2	0/1:67,84:33:151:0.556:2
chr9	27213580	rs3737188	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:19,24:30:43:0.558:2	./.	0/1:0,3:30:3:1.00:2	./.	./.	0/1:26,19:29:45:0.422:2	./.	./.	./.	0/1:28,19:30:47:0.404:2	./.
chr9	27220066	rs2273719	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,52:31:91:0.571:2	0/1:70,65:31:135:0.481:2
chr9	27294380	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:30:93:0.043:2	./.	./.	./.	./.
chr9	27296705	rs3824406	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,10:30:24:0.417:2	0/1:98,83:30:181:0.459:2	./.	./.	0/1:76,72:29:148:0.486:2	0/1:3,156:30:159:0.981:2	0/1:88,82:31:170:0.482:2	./.	./.
chr9	27330636	rs13297974	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,54:31:118:0.462:2
chr9	27378301	rs1330920	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,23:28:40:0.575:2	0/1:27,20:28:47:0.426:2	0/1:35,24:27:59:0.407:2	0/1:18,4:28:22:0.182:2	./.	0/1:0,36:28:36:1.00:2
chr9	27455135	rs34959338	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:42,45:32:88:0.517:2	0/1:22,26:32:48:0.542:2	0/1:1,2:31:3:0.667:2	./.	./.	0/1:65,43:31:108:0.398:2	0/1:58,36:32:94:0.383:2	./.	./.	./.	./.
chr9	27524731	rs700785	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:31:90:1.00:2	0/1:0,53:30:54:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,118:30:118:1.00:2	0/1:0,85:30:85:1.00:2	0/1:0,134:30:134:1.00:2	0/1:0,104:30:104:1.00:2	0/1:1,128:30:129:0.992:2	0/1:0,114:30:114:1.00:2	0/1:53,52:30:105:0.495:2	0/1:0,149:30:149:1.00:2
chr9	27556780	rs10122902	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,47:31:105:0.448:2	0/1:47,33:31:80:0.413:2	./.	./.	./.	0/1:39,44:31:83:0.530:2
chr9	27560267	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:32:181:0.022:2	./.	./.	./.
chr9	27561628	rs17769294	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,37:31:81:0.457:2	0/1:32,36:34:68:0.529:2	./.	./.	./.	0/1:62,51:33:113:0.451:2
chr9	32407371	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:32:56:0.071:2	./.
chr9	32419071	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:30:197:0.025:2	./.	./.	./.	./.	./.
chr9	32425869	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:33:96:0.042:2
chr9	32425898	rs34319839	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,90:30:160:0.563:2	./.	./.	./.
chr9	32425910	rs3780473	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,3:31:17:0.176:2	./.	0/1:102,96:32:198:0.485:2	0/1:0,169:32:169:1.00:2	0/1:104,92:32:197:0.469:2	./.	./.	./.	./.
chr9	32427396	rs35370505	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,79:33:142:0.560:2	./.	./.	./.
chr9	32448905	rs61629844	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,24:32:106:0.229:2	./.	./.	./.
chr9	32448959	rs55872609	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,41:31:150:0.273:2	./.	./.	./.
chr9	32450043	rs61261358	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,79:30:173:0.459:2	./.	./.	./.
chr9	32450187	rs12985	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,36:28:59:0.610:2	0/1:23,12:29:35:0.343:2	./.	0/1:2,58:28:60:0.967:2	0/1:30,28:29:58:0.483:2	0/1:2,62:28:64:0.969:2	0/1:23,20:31:43:0.465:2	0/1:35,19:28:54:0.352:2	0/1:30,22:30:52:0.423:2	0/1:24,23:30:47:0.489:2	./.
chr9	32459450	rs3205166	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:39,40:33:79:0.506:2	0/1:33,21:32:54:0.389:2	0/1:10,11:32:21:0.524:2	./.	0/1:30,23:32:53:0.434:2	0/1:1,87:32:88:0.989:2	0/1:30,22:31:52:0.423:2	0/1:34,25:32:59:0.424:2	./.	0/1:40,39:33:79:0.494:2	./.
chr9	32480251	rs17217280	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,37:32:103:0.359:2	./.	./.	./.	./.	./.	./.
chr9	32526146	rs10813831	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:34,18:30:52:0.346:2	0/1:21,14:31:35:0.400:2	0/1:5,4:30:9:0.444:2	./.	./.	0/1:1,48:30:50:0.980:2	0/1:61,43:31:104:0.413:2	./.	0/1:30,32:31:62:0.516:2	0/1:34,30:32:64:0.469:2	./.
chr9	32541532	rs12348918	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:44,42:30:86:0.488:2	0/1:29,17:30:46:0.370:2	0/1:4,3:31:7:0.429:2	./.	./.	0/1:1,92:30:93:0.989:2	0/1:52,30:28:82:0.366:2	./.	0/1:58,56:30:114:0.491:2	0/1:44,37:29:81:0.457:2	./.
chr9	32542204	rs10971019	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:164,5:33:169:0.030:2	./.	0/1:12,13:33:25:0.520:2	./.	0/1:79,81:32:160:0.506:2	./.	0/1:80,70:33:150:0.467:2	0/1:92,86:33:178:0.483:2	0/1:87,67:33:154:0.435:2	0/1:67,111:33:180:0.624:2	0/1:108,87:32:195:0.446:2
chr9	32542278	rs17857515	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,48:33:116:0.414:2	./.	./.	./.	./.	./.	./.	./.
chr9	32550912	rs112527210	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	./.	./.	./.	./.	./.	./.
chr9	32567239	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:33:101:0.040:2	./.	./.	./.	./.
chr9	32567441	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.
chr9	32567655	rs67236328	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,17:32:59:0.288:2	./.	./.	./.	./.	./.	./.
chr9	32568024	rs598349	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,10:32:17:0.588:2	0/1:3,3:29:6:0.500:2	./.	./.	0/1:0,11:32:11:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,16:34:16:1.00:2	0/1:0,10:33:10:1.00:2	0/1:12,8:33:20:0.400:2
chr9	32568168	rs611653	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:19,21:30:40:0.525:2	0/1:4,16:31:20:0.800:2	0/1:1,3:26:4:0.750:2	./.	0/1:0,13:31:13:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,33:31:34:1.00:2	0/1:0,40:31:40:1.00:2	0/1:22,18:31:40:0.450:2
chr9	32568327	rs34955317	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,20:32:31:0.645:2	./.	./.	./.	./.	./.	./.
chr9	32568495	rs140972723	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,18:32:48:0.375:2	./.
chr9	32630280	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.	./.
chr9	32630472	rs10758145	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,184:32:187:0.984:2	0/1:89,80:33:169:0.473:2	./.	./.
chr9	32630793	.	A	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,5:31:33:0.152:2	./.	0/1:117,6:31:123:0.049:2	./.	0/1:121,4:32:125:0.032:2	0/1:162,4:32:166:0.024:2	./.	./.	./.
chr9	32630814	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,5:31:33:0.152:2	./.	0/1:98,6:31:104:0.058:2	./.	0/1:107,4:32:111:0.036:2	0/1:146,4:32:150:0.027:2	./.	./.	./.
chr9	32630820	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,5:32:32:0.156:2	./.	0/1:95,6:32:104:0.059:2	./.	0/1:107,4:33:115:0.036:2	0/1:136,4:33:143:0.029:2	./.	./.	./.
chr9	32630879	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:94,4:32:98:0.041:2	./.	0/1:180,5:31:185:0.027:2	./.	./.	./.	0/1:131,11:31:142:0.077:2	./.	0/1:165,5:32:170:0.029:2	./.
chr9	32630894	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:85,4:32:89:0.045:2	./.	0/1:172,5:33:177:0.028:2	./.	./.	./.	0/1:137,11:30:148:0.074:2	./.	0/1:173,5:33:178:0.028:2	./.
chr9	32630916	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:84,4:32:88:0.045:2	./.	0/1:180,5:30:185:0.027:2	./.	./.	./.	0/1:147,11:30:158:0.070:2	./.	0/1:160,5:30:165:0.030:2	./.
chr9	32631369	rs10971047	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,83:31:182:0.456:2	./.	./.	./.
chr9	32631393	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:183,5:31:189:0.027:2	./.	./.	0/1:190,5:33:195:0.026:2	./.	./.	./.
chr9	32631705	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,6:32:181:0.033:2	./.
chr9	32631911	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,5:30:191:0.026:2
chr9	32631966	rs45559233	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,84:31:193:0.435:2	./.	./.	./.
chr9	32632179	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:31:179:0.022:2	./.	./.	./.
chr9	32632408	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:31:160:0.025:2	./.	./.	./.	./.
chr9	32632532	rs35905429	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,81:31:197:0.413:2	./.	./.	./.	0/1:98,91:32:189:0.481:2	./.
chr9	32632885	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.	./.	./.
chr9	32632947	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:33:152:0.026:2	./.	./.	./.	./.
chr9	32633619	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:174,4:33:178:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr9	32633778	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,6:31:96:0.063:2	./.	./.	./.
chr9	32633799	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:106,5:31:111:0.045:2	./.	./.	./.	./.	./.	./.	0/1:108,6:29:114:0.053:2	./.	0/1:95,6:31:101:0.059:2	./.
chr9	32633800	.	A	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:111,5:31:116:0.043:2	./.	./.	./.	./.	./.	./.	0/1:110,6:28:116:0.052:2	./.	0/1:97,6:31:103:0.058:2	./.
chr9	32634093	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,7:31:175:0.040:2	./.	./.	./.	./.
chr9	32634147	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,6:32:174:0.034:2	./.	./.	./.
chr9	32634155	rs201005521	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,6:32:173:0.035:2	./.	./.	./.
chr9	32634260	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.
chr9	32634324	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:165,6:32:171:0.035:2	./.	./.	./.	0/1:191,5:31:196:0.026:2	./.	./.	./.	./.	./.
chr9	32634349	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:167,4:32:171:0.023:2	0/1:155,6:32:161:0.037:2	./.	./.	./.	0/1:193,6:29:199:0.030:2	./.	./.	./.	./.	./.
chr9	32634467	rs17219559	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:92,92:32:184:0.500:2	0/1:86,97:32:183:0.530:2	0/1:31,21:32:52:0.404:2	./.	./.	./.	0/1:115,71:32:186:0.382:2	./.	./.	./.	0/1:103,84:31:187:0.449:2
chr9	32634539	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:32:156:0.026:2	./.
chr9	32634577	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:33:129:0.031:2	./.
chr9	32635512	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.	./.	./.	./.
chr9	32784838	rs1810807	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,151:33:155:0.974:2	0/1:2,79:32:81:0.975:2	./.	./.	0/1:74,79:32:153:0.516:2	0/1:77,89:32:166:0.536:2	0/1:2,132:32:135:0.985:2	./.	./.	./.	0/1:84,57:33:142:0.404:2
chr9	32785076	rs10971128	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,75:31:165:0.455:2	./.	./.	./.
chr9	32785399	rs644337	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,42:31:42:1.00:2	0/1:0,21:30:21:1.00:2	./.	0/1:0,27:30:27:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,19:27:19:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,41:29:41:1.00:2
chr9	32785888	rs167280	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,47:33:47:1.00:2	0/1:0,30:32:30:1.00:2	./.	0/1:36,26:32:62:0.419:2	0/1:25,26:32:51:0.510:2	0/1:0,43:32:43:1.00:2	0/1:0,39:33:39:1.00:2	0/1:33,18:32:51:0.353:2	0/1:0,48:33:48:1.00:2	0/1:40,33:33:73:0.452:2	0/1:42,36:33:78:0.462:2
chr9	32786553	rs300639	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,115:33:115:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,15:33:15:1.00:2	0/1:1,152:33:153:0.993:2	0/1:0,83:32:83:1.00:2	0/1:0,116:32:117:1.00:2	0/1:0,40:32:40:1.00:2	0/1:2,122:32:125:0.984:2	0/1:3,112:33:115:0.974:2	0/1:0,120:32:120:1.00:2	0/1:118,76:33:194:0.392:2
chr9	32786586	rs300638	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,137:32:137:1.00:2	0/1:0,63:31:63:1.00:2	0/1:10,6:30:16:0.375:2	0/1:119,73:31:192:0.380:2	0/1:67,33:30:100:0.330:2	0/1:0,120:31:120:1.00:2	0/1:0,43:31:43:1.00:2	0/1:97,40:31:137:0.292:2	0/1:0,129:32:129:1.00:2	0/1:100,54:30:154:0.351:2	0/1:0,181:32:181:1.00:2
chr9	32786653	rs300637	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,83:32:83:1.00:2	0/1:0,49:32:49:1.00:2	0/1:9,3:31:12:0.250:2	0/1:73,36:31:109:0.330:2	0/1:38,24:31:62:0.387:2	0/1:0,59:31:59:1.00:2	0/1:0,22:32:22:1.00:2	0/1:59,24:32:83:0.289:2	0/1:0,107:32:107:1.00:2	0/1:65,33:31:98:0.337:2	0/1:57,32:32:89:0.360:2
chr9	32787720	rs214130	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,33:32:33:1.00:2	0/1:0,9:32:9:1.00:2	./.	0/1:25,26:31:51:0.510:2	0/1:8,9:31:17:0.529:2	0/1:0,37:30:37:1.00:2	0/1:0,22:31:22:1.00:2	0/1:26,31:30:57:0.544:2	0/1:0,54:32:54:1.00:2	0/1:16,22:31:38:0.579:2	0/1:0,53:32:53:1.00:2
chr9	32788611	rs10813876	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,10:29:24:0.417:2	0/1:102,90:29:192:0.469:2	0/1:56,51:29:107:0.477:2	./.	./.	0/1:69,63:28:132:0.477:2	./.	0/1:66,89:30:155:0.574:2	./.
chr9	32788677	rs300636	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:32:70:1.00:2	0/1:0,44:32:44:1.00:2	0/1:6,5:29:11:0.455:2	0/1:49,42:31:91:0.462:2	0/1:31,24:31:55:0.436:2	0/1:0,52:30:52:1.00:2	0/1:0,48:31:48:1.00:2	0/1:35,21:31:56:0.375:2	0/1:1,58:32:59:0.983:2	0/1:45,31:32:76:0.408:2	0/1:50,28:32:78:0.359:2
chr9	32788764	rs12375613	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,14:31:35:0.400:2	./.	./.	./.
chr9	32788927	rs62541977	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,16:32:27:0.593:2	0/1:6,12:32:18:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	32986040	rs1981011	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:34:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	32986041	rs10123944	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:34:3:1.00:2	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	0/1:0,4:33:4:1.00:2	./.	./.	0/1:1,5:30:6:0.833:2	0/1:6,5:30:11:0.455:2
chr9	32987706	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:33:100:0.040:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	33026572	rs20583	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:32:4:1.00:2	0/1:45,30:33:75:0.400:2	0/1:26,17:33:43:0.395:2	0/1:28,24:33:52:0.462:2	0/1:33,22:32:55:0.400:2	0/1:2,98:33:100:0.980:2	0/1:44,41:33:85:0.482:2	0/1:53,32:33:85:0.376:2	./.
chr9	33071802	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:33:143:0.028:2	./.	./.
chr9	33135238	rs1065765	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,50:32:108:0.463:2	./.	./.	0/1:26,16:31:42:0.381:2	./.
chr9	33240225	rs706107	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:75,68:31:143:0.476:2	0/1:61,37:32:98:0.378:2	0/1:15,7:31:22:0.318:2	./.	0/1:106,88:31:194:0.454:2	0/1:99,84:31:183:0.459:2	./.	./.	./.	./.	./.
chr9	33255128	rs41274029	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,41:32:70:0.586:2	./.	./.	./.	./.
chr9	33264355	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:31:137:0.029:2	./.	./.	./.	./.
chr9	33278124	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:32:127:0.031:2	./.	./.	./.	./.	./.
chr9	33278164	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:29:101:0.040:2	./.	./.	./.	./.	./.
chr9	33278170	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:30:97:0.041:2	./.	./.	./.	./.	./.
chr9	33290532	rs830576	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,43:32:43:1.00:2	0/1:0,18:31:18:1.00:2	./.	0/1:0,56:32:56:1.00:2	0/1:30,37:32:67:0.552:2	0/1:28,24:31:52:0.462:2	0/1:0,49:33:49:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,49:31:49:1.00:2
chr9	33311139	rs149591764	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,56:32:99:0.566:2	0/1:20,28:31:48:0.583:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	33318728	rs137968719	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.	./.	./.	./.
chr9	33318908	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,55:32:152:0.362:2	./.
chr9	33351635	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:33:135:0.030:2	./.	./.	./.	./.
chr9	33369943	rs2230122	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,22:31:50:0.440:2	./.	./.	0/1:13,14:32:27:0.519:2	./.	0/1:23,39:32:62:0.629:2	0/1:27,23:32:50:0.460:2	./.
chr9	33385165	rs3569	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:37,3:32:40:0.075:2	./.	./.	./.	0/1:47,5:30:52:0.096:2	./.	./.	./.	./.	0/1:46,3:32:49:0.061:2	./.
chr9	33385235	rs202043723	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,3:34:28:0.107:2	./.	./.
chr9	33385241	rs62542743	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,16:32:21:0.762:2	0/1:2,4:32:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	33385287	rs74557595	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,3:29:19:0.158:2	./.	./.	./.	./.	./.
chr9	33385690	rs139024279	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,3:33:34:0.088:2	./.	./.	./.	./.	./.	./.	./.
chr9	33385808	rs62542744	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,3:33:40:0.075:2	./.
chr9	33385815	rs62542745	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,5:29:60:0.083:2	./.	./.	./.
chr9	33385828	rs73478963	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,5:30:29:0.172:2	./.	./.	./.	0/1:48,9:30:57:0.158:2	0/1:30,8:30:38:0.211:2	0/1:41,6:30:47:0.128:2	0/1:53,10:27:63:0.159:2	0/1:27,5:32:32:0.156:2	0/1:27,8:32:35:0.229:2	./.
chr9	33385852	rs202183465	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,5:32:21:0.238:2	./.	./.	./.	0/1:32,10:30:42:0.238:2	0/1:27,9:32:36:0.250:2	0/1:26,9:26:35:0.257:2	0/1:49,12:28:61:0.197:2	0/1:25,5:32:30:0.167:2	0/1:24,9:31:33:0.273:2	0/1:31,3:32:34:0.088:2
chr9	33385863	rs62542746	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,9:29:24:0.375:2	./.	./.	0/1:20,5:30:25:0.200:2	0/1:26,13:31:39:0.333:2	0/1:21,11:31:32:0.344:2	0/1:21,14:30:35:0.400:2	0/1:33,25:31:58:0.431:2	0/1:22,7:32:29:0.241:2	0/1:20,15:32:35:0.429:2	0/1:25,6:31:31:0.194:2
chr9	33386144	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:110,6:31:116:0.052:2	0/1:69,4:32:73:0.055:2	./.	./.	0/1:188,5:32:193:0.026:2	./.	./.	0/1:177,6:32:183:0.033:2	./.	0/1:137,7:31:144:0.049:2	0/1:118,5:28:123:0.041:2
chr9	33386146	rs76608797	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:114,6:32:120:0.050:2	0/1:67,4:33:71:0.056:2	./.	./.	0/1:188,5:31:193:0.026:2	./.	./.	0/1:178,6:31:184:0.033:2	./.	0/1:137,7:29:144:0.049:2	0/1:122,5:30:127:0.039:2
chr9	33386167	rs79172651	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:98,5:32:103:0.049:2	./.	./.	./.	./.	./.	./.	0/1:151,7:32:158:0.044:2	./.	./.	0/1:114,4:32:118:0.034:2
chr9	33386430	rs74589499	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,3:32:31:0.097:2	./.	./.	0/1:80,4:31:84:0.048:2	0/1:75,7:29:82:0.085:2	0/1:77,6:30:83:0.072:2	0/1:82,7:31:89:0.079:2	./.	./.	0/1:75,4:31:79:0.051:2
chr9	33386465	rs74668961	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,5:31:50:0.100:2	./.	./.	0/1:157,4:32:161:0.025:2	0/1:107,7:32:114:0.061:2	0/1:137,6:30:143:0.042:2	0/1:153,8:31:161:0.050:2	./.	./.	0/1:108,6:27:114:0.053:2
chr9	33386469	rs78695486	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:46,5:31:51:0.098:2	./.	0/1:101,5:25:106:0.047:2	0/1:153,4:33:157:0.025:2	0/1:111,7:32:118:0.059:2	0/1:152,6:32:158:0.038:2	0/1:159,6:30:165:0.036:2	./.	./.	0/1:112,6:26:118:0.051:2
chr9	33386510	rs77962308	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:109,24:31:133:0.180:2	0/1:59,15:32:74:0.203:2	./.	0/1:123,28:30:151:0.185:2	0/1:152,10:30:162:0.062:2	0/1:118,23:30:141:0.163:2	0/1:151,14:30:165:0.085:2	0/1:150,20:29:170:0.118:2	0/1:139,16:31:155:0.103:2	0/1:128,33:30:161:0.205:2	0/1:130,14:31:144:0.097:2
chr9	33386511	rs72707424	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:110,24:32:134:0.179:2	0/1:60,15:32:75:0.200:2	./.	0/1:124,28:31:152:0.184:2	0/1:151,11:30:162:0.068:2	0/1:118,23:31:141:0.163:2	0/1:151,14:31:165:0.085:2	0/1:146,21:31:167:0.126:2	0/1:139,16:32:155:0.103:2	0/1:128,33:32:161:0.205:2	0/1:127,14:33:142:0.099:2
chr9	33386526	rs79202054	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:104,31:30:135:0.230:2	0/1:64,23:31:87:0.264:2	./.	0/1:119,34:31:154:0.222:2	0/1:145,12:30:157:0.076:2	0/1:114,36:30:150:0.240:2	0/1:150,22:32:172:0.128:2	0/1:142,32:32:174:0.184:2	0/1:137,28:32:165:0.170:2	0/1:123,41:32:164:0.250:2	0/1:131,22:31:153:0.144:2
chr9	33386972	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:132,13:32:145:0.090:2	./.	./.	0/1:66,6:30:72:0.083:2	0/1:121,9:31:130:0.069:2	./.	./.	./.
chr9	33386989	rs77244521	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:84,17:30:101:0.168:2	0/1:44,6:32:50:0.120:2	./.	0/1:139,21:31:160:0.131:2	0/1:90,21:30:111:0.189:2	0/1:109,20:29:129:0.155:2	0/1:81,10:29:91:0.110:2	0/1:126,29:31:155:0.187:2	0/1:131,8:29:139:0.058:2	0/1:102,20:31:122:0.164:2	0/1:93,11:29:104:0.106:2
chr9	33387004	rs76863051	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:96,20:32:116:0.172:2	0/1:57,7:32:64:0.109:2	0/1:24,4:30:28:0.143:2	0/1:131,29:30:160:0.181:2	0/1:113,32:30:145:0.221:2	0/1:121,31:32:153:0.204:2	0/1:93,16:31:109:0.147:2	0/1:131,34:32:165:0.206:2	0/1:140,10:30:150:0.067:2	0/1:104,24:31:128:0.188:2	0/1:106,18:29:124:0.145:2
chr9	33387007	rs146743129	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,7:31:115:0.061:2	./.	./.	./.	./.
chr9	33387044	rs199711780	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,5:32:172:0.029:2	./.	./.
chr9	33387047	rs4008658	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,36:32:123:0.293:2	0/1:56,24:32:80:0.300:2	0/1:22,9:32:31:0.290:2	0/1:123,45:33:168:0.268:2	0/1:113,44:32:157:0.280:2	0/1:102,49:32:151:0.325:2	0/1:98,39:33:137:0.285:2	0/1:103,60:33:163:0.368:2	0/1:124,46:33:170:0.271:2	0/1:110,60:32:170:0.353:2	0/1:110,54:32:164:0.329:2
chr9	33387060	rs4008659	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,5:34:135:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,6:32:158:0.038:2
chr9	33387073	rs73645276	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:86,35:32:121:0.289:2	0/1:60,25:32:85:0.294:2	0/1:19,9:33:28:0.321:2	0/1:115,38:33:153:0.248:2	0/1:109,37:32:146:0.253:2	0/1:101,43:32:145:0.299:2	0/1:88,32:33:120:0.267:2	0/1:106,43:32:150:0.289:2	0/1:110,44:33:154:0.286:2	0/1:108,54:33:162:0.333:2	0/1:113,49:33:162:0.302:2
chr9	33391479	rs4080365	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:38,13:32:51:0.255:2	0/1:18,9:32:27:0.333:2	./.	0/1:57,35:31:92:0.380:2	0/1:39,28:31:67:0.418:2	./.	0/1:57,25:31:82:0.305:2	0/1:49,37:30:86:0.430:2	0/1:50,13:32:64:0.206:2	0/1:51,37:31:88:0.420:2	0/1:34,27:31:62:0.443:2
chr9	33391522	rs182339228	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:38,4:30:42:0.095:2	./.	./.	0/1:49,9:28:58:0.155:2	0/1:38,9:31:47:0.191:2	0/1:28,5:32:33:0.152:2	0/1:42,15:29:57:0.263:2	0/1:51,9:29:60:0.150:2	0/1:37,8:29:45:0.178:2	./.	0/1:34,5:30:39:0.128:2
chr9	33395108	rs2381003	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:96,16:32:112:0.143:2	0/1:56,4:33:60:0.067:2	./.	0/1:147,14:32:161:0.087:2	0/1:163,27:31:190:0.142:2	0/1:143,21:32:164:0.128:2	0/1:158,18:31:176:0.102:2	0/1:160,21:32:181:0.116:2	0/1:136,8:33:144:0.056:2	0/1:111,14:32:126:0.112:2	0/1:142,13:32:155:0.084:2
chr9	33395135	rs2381005	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:32:120:0.034:2	0/1:149,4:33:153:0.026:2
chr9	33395196	rs642636	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:33:73:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,108:33:108:1.00:2	0/1:0,99:31:99:1.00:2	0/1:0,93:32:93:1.00:2	0/1:2,121:32:123:0.984:2	0/1:0,117:32:117:1.00:2	0/1:0,99:33:99:1.00:2	0/1:0,93:33:93:1.00:2	0/1:0,97:33:97:1.00:2
chr9	33395198	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,5:29:75:0.067:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	33395216	rs73645286	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:56,8:31:64:0.125:2	./.	./.	0/1:72,7:33:79:0.089:2	0/1:82,5:31:87:0.057:2	0/1:73,5:29:78:0.064:2	0/1:88,11:32:99:0.111:2	0/1:79,11:30:90:0.122:2	./.	0/1:67,9:32:76:0.118:2	0/1:67,9:32:76:0.118:2
chr9	33442952	rs2228332	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,86:31:88:0.977:2	./.	./.	0/1:0,124:31:124:1.00:2	0/1:79,62:32:141:0.440:2	0/1:1,75:32:76:0.987:2	0/1:0,94:31:94:1.00:2
chr9	33447424	rs591810	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:33,27:29:60:0.450:2	0/1:16,16:30:32:0.500:2	0/1:10,9:29:19:0.474:2	./.	0/1:1,100:29:101:0.990:2	./.	0/1:67,38:28:105:0.362:2	0/1:0,124:29:124:1.00:2	0/1:0,96:30:96:1.00:2	0/1:0,68:29:68:1.00:2	0/1:0,85:30:85:1.00:2
chr9	33462202	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:30:122:0.033:2	./.	./.	./.	./.
chr9	33466219	rs3739681	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,18:32:28:0.643:2	0/1:7,7:31:14:0.500:2	./.	./.	./.	./.	./.	./.	0/1:16,18:32:34:0.529:2	./.	./.
chr9	33466576	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:31:47:0.085:2
chr9	33524684	rs3843933	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,32:31:33:0.970:2	0/1:0,15:31:15:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,33:29:33:1.00:2	0/1:30,16:28:46:0.348:2	0/1:0,37:29:37:1.00:2	0/1:12,7:31:19:0.368:2	0/1:16,16:30:32:0.500:2	0/1:0,36:31:36:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,31:30:31:1.00:2
chr9	33533472	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:198:0.020:2	./.	./.	./.	./.
chr9	33541134	rs2763820	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:33:195:0.026:2	0/1:108,5:31:113:0.044:2	./.	./.	./.	./.	./.	./.	./.	0/1:188,6:29:194:0.031:2	./.
chr9	33541197	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:33:71:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	33541216	rs111814125	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,6:29:85:0.071:2	./.	./.	0/1:79,12:29:91:0.132:2	./.	./.	./.	./.	./.	./.
chr9	33543178	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:33:38:0.079:2	./.	./.	./.	./.
chr9	33548175	rs41304751	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,52:30:93:0.559:2	./.	./.	./.	0/1:45,50:29:95:0.526:2	0/1:47,45:30:92:0.489:2	0/1:46,47:29:93:0.505:2	./.
chr9	33548450	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,5:31:78:0.064:2	./.	./.	./.	./.	./.	./.
chr9	33558110	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:193,5:34:198:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr9	33566234	rs62559879	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:47,47:33:94:0.500:2	0/1:26,32:33:58:0.552:2	./.	0/1:60,50:33:110:0.455:2	./.	./.	./.	./.	0/1:63,81:34:144:0.563:2	./.	./.
chr9	33566370	rs4141844	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,25:32:47:0.532:2	./.	./.	./.	0/1:38,23:33:61:0.377:2	0/1:40,28:33:68:0.412:2	0/1:32,37:33:69:0.536:2	./.
chr9	33568687	rs7032174	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,27:33:43:0.628:2	./.	./.	./.	0/1:29,18:33:47:0.383:2	0/1:37,30:34:67:0.448:2	0/1:29,27:33:56:0.482:2	./.
chr9	33568710	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:30:84:0.048:2	./.	./.
chr9	33568718	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:32:91:0.044:2	./.	./.
chr9	33568789	rs10971566	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:27,20:33:47:0.426:2	0/1:28,16:32:44:0.364:2	./.	0/1:29,26:32:55:0.473:2	./.	./.	./.	0/1:19,10:32:29:0.345:2	0/1:37,46:33:83:0.554:2	./.	0/1:42,38:34:80:0.475:2
chr9	33572347	rs7853994	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:91,87:32:178:0.489:2	0/1:74,46:32:120:0.383:2	./.	0/1:84,91:33:175:0.520:2	./.	./.	./.	./.	0/1:102,81:34:183:0.443:2	./.	./.
chr9	33617792	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:33:11:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	33617828	rs41315987	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,3:32:13:0.231:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	33618358	rs855512	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:33:75:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,6:34:6:1.00:2	0/1:66,53:33:119:0.445:2	0/1:61,82:32:143:0.573:2	0/1:62,44:33:107:0.415:2	0/1:3,127:33:130:0.977:2	0/1:63,92:32:155:0.594:2	0/1:44,57:34:101:0.564:2	0/1:1,105:32:106:0.991:2	0/1:0,129:33:129:1.00:2
chr9	33618460	rs966447	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,45:32:46:0.978:2	0/1:2,31:33:33:0.939:2	0/1:0,4:32:4:1.00:2	0/1:30,29:32:59:0.492:2	0/1:51,52:32:103:0.505:2	0/1:36,36:31:72:0.500:2	0/1:1,97:32:98:0.990:2	0/1:62,48:32:110:0.436:2	0/1:39,31:32:70:0.443:2	0/1:0,72:33:72:1.00:2	0/1:0,80:33:80:1.00:2
chr9	33618497	rs2380835	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,33:31:34:0.971:2	0/1:1,21:31:22:0.955:2	0/1:0,4:33:4:1.00:2	0/1:21,17:31:38:0.447:2	0/1:44,43:31:87:0.494:2	0/1:34,37:30:71:0.521:2	0/1:0,74:31:74:1.00:2	0/1:39,35:31:74:0.473:2	0/1:25,24:31:49:0.490:2	0/1:0,59:31:59:1.00:2	0/1:0,67:32:67:1.00:2
chr9	33638046	rs7044689	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,16:32:49:0.327:2	0/1:38,23:33:61:0.377:2	./.	./.	./.	0/1:22,13:31:35:0.371:2	./.
chr9	33662389	rs1832325	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,20:31:43:0.465:2	0/1:19,19:33:38:0.500:2	./.	./.	./.	./.	./.
chr9	33662424	rs41313962	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,29:32:60:0.483:2	0/1:39,33:33:72:0.458:2	./.	./.
chr9	33662557	rs41302224	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,18:32:42:0.429:2	0/1:38,17:33:55:0.309:2	./.	./.
chr9	33662593	rs16933245	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,12:31:28:0.429:2	0/1:22,9:30:31:0.290:2	./.	./.
chr9	33794809	rs201061108	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:97,14:31:111:0.126:2	0/1:70,8:31:78:0.103:2	0/1:17,3:30:20:0.150:2	0/1:114,38:31:152:0.250:2	0/1:132,39:31:171:0.228:2	0/1:142,34:30:176:0.193:2	0/1:141,37:31:178:0.208:2	0/1:132,37:30:169:0.219:2	0/1:134,27:32:161:0.168:2	0/1:106,22:32:128:0.172:2	0/1:133,24:32:157:0.153:2
chr9	33794812	rs199873220	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:100,15:30:115:0.130:2	0/1:71,8:31:79:0.101:2	0/1:16,3:31:19:0.158:2	0/1:114,38:30:152:0.250:2	0/1:134,39:30:173:0.225:2	0/1:140,34:30:174:0.195:2	0/1:140,37:30:177:0.209:2	0/1:132,37:30:170:0.219:2	0/1:137,28:32:165:0.170:2	0/1:107,22:30:129:0.171:2	0/1:133,24:32:157:0.153:2
chr9	33796657	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,3:34:66:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	33796660	.	T	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:102,9:31:111:0.081:2	0/1:61,5:31:66:0.076:2	./.	0/1:118,6:32:124:0.048:2	./.	0/1:127,8:31:135:0.059:2	0/1:106,8:30:114:0.070:2	./.	0/1:130,7:31:137:0.051:2	0/1:111,8:31:119:0.067:2	0/1:112,6:31:118:0.051:2
chr9	33796672	rs77765166	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:94,13:31:107:0.121:2	0/1:61,6:32:67:0.090:2	./.	0/1:116,7:32:123:0.057:2	./.	0/1:119,11:31:130:0.085:2	0/1:96,11:31:107:0.103:2	./.	0/1:132,10:33:142:0.070:2	0/1:103,11:32:114:0.096:2	0/1:108,8:30:116:0.069:2
chr9	33796673	rs76740888	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:96,12:29:108:0.111:2	0/1:62,6:31:68:0.088:2	./.	0/1:114,7:31:121:0.058:2	./.	0/1:118,11:31:129:0.085:2	0/1:95,11:29:107:0.104:2	./.	0/1:132,10:33:142:0.070:2	0/1:103,11:32:114:0.096:2	0/1:104,8:31:112:0.071:2
chr9	33796799	rs200709040	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,13:31:86:0.151:2	0/1:54,11:32:65:0.169:2	0/1:8,3:31:11:0.273:2	0/1:79,10:30:89:0.112:2	0/1:49,9:30:58:0.155:2	0/1:90,5:32:95:0.053:2	0/1:72,29:31:101:0.287:2	0/1:84,9:31:93:0.097:2	0/1:69,11:33:80:0.138:2	0/1:98,13:31:111:0.117:2	0/1:72,17:31:89:0.191:2
chr9	33797861	rs151192741	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,16:29:94:0.170:2	0/1:71,13:29:84:0.155:2	0/1:7,3:30:10:0.300:2	0/1:131,38:28:169:0.225:2	0/1:128,15:28:143:0.105:2	0/1:139,37:28:176:0.210:2	0/1:146,41:28:187:0.219:2	0/1:145,21:28:166:0.127:2	0/1:151,24:30:175:0.137:2	0/1:136,54:29:190:0.284:2	0/1:118,56:27:174:0.322:2
chr9	33797881	rs372122039	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:112,12:32:124:0.097:2	0/1:81,11:32:92:0.120:2	./.	0/1:138,33:30:171:0.193:2	0/1:170,9:31:179:0.050:2	0/1:138,29:31:167:0.174:2	0/1:147,36:32:183:0.197:2	0/1:149,11:30:161:0.069:2	0/1:161,18:32:179:0.101:2	0/1:133,42:31:175:0.240:2	0/1:130,46:31:176:0.261:2
chr9	33797896	rs113220686	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:99,4:33:103:0.039:2	./.	0/1:156,5:33:161:0.031:2	./.	./.	./.	0/1:146,6:34:152:0.039:2	./.	./.	./.
chr9	33797917	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:145,7:31:152:0.046:2	./.	./.	0/1:135,19:34:154:0.123:2	./.	0/1:133,13:34:146:0.089:2	0/1:130,20:32:150:0.133:2	./.	0/1:157,5:34:162:0.031:2	0/1:134,25:33:159:0.157:2	0/1:123,26:32:149:0.174:2
chr9	33797951	rs150316320	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:136,6:33:142:0.042:2	./.	./.	./.	./.	./.	0/1:108,5:32:113:0.044:2	./.	./.	./.	./.
chr9	33797962	rs374178684	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:124,5:30:130:0.039:2	./.	./.	./.	./.	0/1:96,4:31:106:0.040:2	0/1:95,4:31:103:0.040:2	./.	./.	./.	./.
chr9	33798017	rs855581	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,78:30:80:0.975:2	0/1:2,55:31:57:0.965:2	0/1:0,7:29:7:1.00:2	0/1:1,80:31:81:0.988:2	0/1:3,61:30:64:0.953:2	0/1:0,67:31:67:1.00:2	0/1:1,67:30:68:0.985:2	0/1:1,54:31:56:0.982:2	0/1:0,83:32:83:1.00:2	0/1:0,89:30:89:1.00:2	0/1:0,73:31:73:1.00:2
chr9	33798052	rs377380263	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,36:31:77:0.468:2	0/1:29,22:31:51:0.431:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	33798543	rs200731425	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:89,6:32:95:0.063:2	0/1:27,3:31:30:0.100:2	0/1:158,6:33:164:0.037:2	0/1:142,14:34:156:0.090:2	0/1:147,10:33:157:0.064:2	0/1:141,18:32:159:0.113:2	0/1:156,11:34:167:0.066:2	0/1:164,4:32:168:0.024:2	0/1:158,9:32:167:0.054:2	0/1:146,6:31:152:0.039:2
chr9	33798574	rs201773718	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:163,8:32:171:0.047:2	0/1:102,13:31:115:0.113:2	0/1:44,6:28:50:0.120:2	0/1:141,14:30:155:0.090:2	0/1:132,20:31:152:0.132:2	0/1:139,15:30:154:0.097:2	0/1:123,23:31:146:0.158:2	0/1:138,16:31:154:0.104:2	0/1:143,8:30:151:0.053:2	0/1:131,19:31:150:0.127:2	0/1:139,12:31:151:0.079:2
chr9	33798596	rs377148991	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:145,8:28:153:0.052:2	0/1:99,13:31:112:0.116:2	0/1:39,6:29:45:0.133:2	0/1:105,14:30:119:0.118:2	0/1:105,21:27:126:0.167:2	0/1:104,15:29:119:0.126:2	0/1:102,23:30:125:0.184:2	0/1:114,17:30:131:0.130:2	0/1:114,7:31:121:0.058:2	0/1:118,19:29:137:0.139:2	0/1:121,12:29:133:0.090:2
chr9	33799086	rs150624305	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:31:146:0.027:2	./.	./.	./.	./.	./.
chr9	33799098	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:32:158:0.025:2	./.	./.	./.	./.	./.
chr9	33799099	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:32:158:0.025:2	./.	./.	./.	./.	./.
chr9	33799163	rs376841271	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:113,13:31:126:0.103:2	0/1:62,6:31:68:0.088:2	./.	0/1:118,21:30:139:0.151:2	0/1:95,16:30:111:0.144:2	0/1:131,13:29:144:0.090:2	0/1:122,24:31:146:0.164:2	0/1:159,20:30:179:0.112:2	0/1:125,8:30:133:0.060:2	0/1:122,4:31:126:0.032:2	0/1:108,9:31:117:0.077:2
chr9	33927899	rs307692	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,84:30:85:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,7:27:7:1.00:2	0/1:0,129:30:129:1.00:2	0/1:0,178:30:178:1.00:2	0/1:0,128:29:129:1.00:2	0/1:0,184:30:184:1.00:2	0/1:0,174:29:174:1.00:2	0/1:0,140:31:140:1.00:2	0/1:0,82:31:82:1.00:2	0/1:0,71:30:72:1.00:2
chr9	33935736	rs307652	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,34:32:58:0.586:2	0/1:12,14:33:26:0.538:2	0/1:3,3:35:6:0.500:2	0/1:42,33:33:75:0.440:2	0/1:35,35:32:70:0.500:2	0/1:39,23:32:62:0.371:2	0/1:1,68:32:69:0.986:2	0/1:0,71:32:71:1.00:2	0/1:41,32:33:73:0.438:2	./.	0/1:0,71:33:71:1.00:2
chr9	33941759	rs307658	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:50,47:33:97:0.485:2	0/1:18,20:32:38:0.526:2	0/1:9,4:32:13:0.308:2	./.	./.	./.	0/1:75,47:32:122:0.385:2	0/1:112,78:32:190:0.411:2	0/1:80,63:34:143:0.441:2	./.	./.
chr9	33971740	rs3739690	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,12:31:24:0.500:2	0/1:10,9:29:19:0.474:2	0/1:15,16:30:31:0.516:2	0/1:13,6:31:19:0.316:2	0/1:14,22:30:36:0.611:2	./.	./.	0/1:0,27:31:27:1.00:2
chr9	33986766	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,36:33:78:0.462:2	0/1:27,30:33:57:0.526:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	34017106	rs1785506	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,25:33:59:0.424:2	0/1:27,18:33:45:0.400:2	0/1:5,11:32:16:0.688:2	0/1:1,123:33:124:0.992:2	0/1:0,93:32:93:1.00:2	0/1:6,89:32:95:0.937:2	0/1:50,39:33:89:0.438:2	0/1:70,54:33:124:0.435:2	0/1:53,57:33:110:0.518:2	0/1:0,99:32:99:1.00:2	0/1:0,90:33:90:1.00:2
chr9	34093400	rs149115505	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,71:30:146:0.486:2	./.	./.	./.	./.	./.	./.	./.
chr9	34107504	rs1378	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:30:4:0.750:2	0/1:23,36:32:59:0.610:2	./.	./.	0/1:42,21:32:63:0.333:2	0/1:29,26:32:55:0.473:2	0/1:47,37:32:84:0.440:2	./.	0/1:41,27:32:68:0.397:2
chr9	34107505	rs11557154	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,20:31:48:0.417:2	./.	./.	./.	./.	./.
chr9	34125258	rs61735450	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,17:32:53:0.321:2	0/1:18,16:31:34:0.471:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	34254420	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,25:31:40:0.625:2	./.	./.	./.	./.	./.	./.	./.
chr9	34255783	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2
chr9	34255988	rs41274039	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,69:29:148:0.466:2	./.	./.	./.	./.	./.	./.
chr9	34256347	rs10814083	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:2,43:32:46:0.956:2	0/1:0,22:32:22:1.00:2	0/1:7,5:31:12:0.417:2	./.	./.	0/1:34,42:32:76:0.553:2	./.	0/1:35,44:30:79:0.557:2	0/1:37,40:32:77:0.519:2	0/1:30,23:33:53:0.434:2	./.
chr9	34257095	rs41274041	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,49:31:115:0.426:2	./.	0/1:68,56:32:124:0.452:2	0/1:57,47:32:104:0.452:2	./.
chr9	34306410	rs17350674	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,33:31:88:0.375:2	0/1:64,54:31:118:0.458:2	./.	./.	./.	./.	./.
chr9	34310927	rs10972048	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,153:29:155:0.987:2	0/1:0,141:28:141:1.00:2	0/1:1,30:28:31:0.968:2	0/1:1,160:29:161:0.994:2	0/1:76,50:28:126:0.397:2	./.	0/1:1,125:29:126:0.992:2	0/1:4,167:29:171:0.977:2	0/1:93,103:29:196:0.526:2	0/1:1,141:29:142:0.993:2	0/1:0,178:29:178:1.00:2
chr9	34311020	rs41274845	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,70:30:128:0.547:2	./.	./.
chr9	34371788	rs7852399	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,58:29:111:0.523:2	./.	./.	0/1:37,61:29:98:0.622:2	./.	./.
chr9	34372198	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,3:30:22:0.136:2	./.	./.	./.
chr9	34372347	rs12377	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:29,24:31:53:0.453:2	0/1:16,20:32:36:0.556:2	0/1:3,4:28:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	34372783	rs4879781	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,31:33:31:1.00:2	0/1:0,17:31:17:1.00:2	./.	0/1:0,51:32:51:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,45:34:45:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,35:31:35:1.00:2
chr9	34372873	rs4879782	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:30:44:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,58:32:58:1.00:2	0/1:25,28:32:53:0.528:2	0/1:27,22:31:49:0.449:2	0/1:0,18:32:18:1.00:2	0/1:25,21:31:46:0.457:2	0/1:0,42:30:42:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,40:31:40:1.00:2
chr9	34372931	rs2297776	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,19:31:39:0.487:2	./.	0/1:26,26:31:52:0.500:2	0/1:9,17:29:26:0.654:2	./.
chr9	34379692	rs3737242	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,70:29:143:0.490:2	./.	0/1:68,84:30:152:0.553:2	0/1:83,53:28:137:0.390:2	./.
chr9	34382726	rs3808876	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,133:32:134:1.00:2	0/1:3,67:32:70:0.957:2	0/1:0,14:32:14:1.00:2	0/1:2,160:32:162:0.988:2	0/1:92,85:32:177:0.480:2	0/1:102,76:32:178:0.427:2	0/1:100,89:32:189:0.471:2	0/1:111,76:33:187:0.406:2	0/1:65,70:33:135:0.519:2	0/1:80,50:31:130:0.385:2	0/1:0,159:32:159:1.00:2
chr9	34397545	rs11790577	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,65:32:67:0.970:2	0/1:1,33:32:34:0.971:2	0/1:5,5:29:10:0.500:2	0/1:39,37:33:76:0.487:2	0/1:30,24:33:54:0.444:2	0/1:27,52:32:79:0.658:2	./.	0/1:49,34:32:83:0.410:2	./.	0/1:35,43:32:78:0.551:2	./.
chr9	34459025	rs11547035	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,6:31:11:0.545:2	0/1:60,48:30:108:0.444:2	./.	./.	./.	./.	./.	./.	0/1:55,57:29:112:0.509:2
chr9	34491481	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,34:32:85:0.400:2	./.	./.	./.	./.	./.
chr9	34500821	rs11793196	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,27:32:27:1.00:2	0/1:0,21:31:21:1.00:2	./.	./.	./.	./.	0/1:15,9:29:24:0.375:2	./.	./.	0/1:15,14:31:29:0.483:2	./.
chr9	34506756	rs150261456	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,91:31:174:0.523:2	./.	./.	./.	./.
chr9	34552018	rs41274855	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,62:30:126:0.500:2	./.	./.	./.	./.	./.
chr9	34622030	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	34622389	rs3808869	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:34:6:1.00:2	0/1:1,44:33:46:0.978:2	0/1:17,14:31:31:0.452:2	0/1:17,25:33:42:0.595:2	./.	0/1:31,22:32:53:0.415:2	0/1:27,18:34:45:0.400:2	./.	0/1:15,18:32:33:0.545:2
chr9	34627940	rs13283357	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,11:31:19:0.579:2	./.	0/1:10,10:32:20:0.500:2	0/1:10,3:32:13:0.231:2
chr9	34646709	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:171,4:32:175:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr9	34649442	rs2070074	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:33:5:0.800:2	./.	./.	./.	./.	./.	0/1:38,37:33:75:0.493:2	./.	0/1:30,26:31:56:0.464:2
chr9	34660864	rs11575580	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,40:32:76:0.526:2	./.	./.	./.	0/1:36,38:32:74:0.514:2	./.	./.	0/1:46,27:31:73:0.370:2
chr9	34661994	rs11575584	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,33:31:62:0.532:2	./.	0/1:46,37:32:83:0.446:2
chr9	34723270	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:30:128:0.031:2	./.	./.
chr9	34723296	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,17:10:111:0.153:2	./.	./.	./.	./.	./.	./.	./.
chr9	34723744	rs4878588	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,21:30:48:0.438:2	0/1:25,10:31:35:0.286:2	./.	0/1:40,42:32:82:0.512:2	0/1:40,53:32:93:0.570:2	0/1:2,86:31:88:0.977:2	./.	./.	./.	0/1:35,37:32:72:0.514:2	0/1:41,56:31:98:0.577:2
chr9	34723935	rs2297134	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,26:32:52:0.500:2	0/1:12,11:32:23:0.478:2	./.	0/1:52,35:31:87:0.402:2	0/1:42,34:31:76:0.447:2	0/1:6,56:31:62:0.903:2	./.	./.	./.	0/1:31,30:31:61:0.492:2	0/1:32,35:31:67:0.522:2
chr9	34723988	rs147591106	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,37:30:73:0.507:2	./.	0/1:42,34:31:76:0.447:2	0/1:18,40:30:58:0.690:2	0/1:12,25:29:37:0.676:2
chr9	34724059	rs117821239	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,5:32:34:0.147:2	./.	./.	0/1:45,4:30:49:0.082:2	0/1:27,4:30:31:0.129:2	0/1:1,13:29:14:0.929:2	./.	./.	./.	0/1:36,7:27:43:0.163:2	0/1:39,9:29:48:0.188:2
chr9	34724241	rs3739881	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:71,60:32:131:0.458:2	0/1:38,36:32:74:0.486:2	./.	0/1:86,75:31:161:0.466:2	0/1:93,79:30:172:0.459:2	0/1:1,174:31:175:0.994:2	./.	./.	./.	0/1:65,64:32:129:0.496:2	0/1:75,80:31:155:0.516:2
chr9	34724786	rs72617336	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:82,54:33:136:0.397:2	0/1:64,56:32:120:0.467:2	./.	0/1:72,53:32:125:0.424:2	0/1:64,33:31:97:0.340:2	0/1:10,100:32:110:0.909:2	0/1:96,4:33:101:0.040:2	./.	./.	0/1:57,43:33:100:0.430:2	0/1:59,66:33:126:0.528:2
chr9	34724796	rs150496452	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:80,50:30:130:0.385:2	0/1:56,48:30:104:0.462:2	./.	0/1:70,53:30:123:0.431:2	0/1:59,30:29:90:0.337:2	0/1:13,92:29:105:0.876:2	./.	./.	./.	0/1:52,36:30:89:0.409:2	0/1:60,58:30:118:0.492:2
chr9	34724987	rs201739024	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:159,30:31:189:0.159:2	0/1:87,20:33:107:0.187:2	0/1:36,4:28:40:0.100:2	0/1:168,25:32:193:0.130:2	./.	0/1:152,43:33:196:0.221:2	./.	./.	0/1:172,21:35:193:0.109:2	0/1:165,24:33:189:0.127:2	0/1:166,27:32:193:0.140:2
chr9	34725047	rs78716275	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:127,59:32:186:0.317:2	0/1:108,47:32:155:0.303:2	./.	0/1:120,53:32:173:0.306:2	0/1:71,74:31:145:0.510:2	0/1:82,112:32:194:0.577:2	./.	./.	./.	0/1:108,61:33:169:0.361:2	0/1:131,50:33:181:0.276:2
chr9	34725048	rs201196002	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,71:33:187:0.380:2	0/1:105,48:32:153:0.314:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	34725069	rs114933270	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:142,40:29:182:0.220:2	0/1:115,47:30:162:0.290:2	./.	0/1:142,44:29:186:0.237:2	./.	0/1:122,68:29:190:0.358:2	./.	./.	0/1:155,41:30:196:0.209:2	0/1:136,44:29:180:0.244:2	0/1:143,49:29:192:0.255:2
chr9	34725116	rs62547038	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,59:31:185:0.319:2	./.	0/1:156,42:32:198:0.212:2	0/1:127,63:31:190:0.332:2	0/1:131,65:30:196:0.332:2
chr9	34725196	rs201229466	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,18:31:85:0.212:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	34725368	rs151104708	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:32:38:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,6:33:6:1.00:2	0/1:1,47:32:49:0.979:2	0/1:0,32:33:33:1.00:2	./.	0/1:1,109:32:110:0.991:2	0/1:0,100:32:100:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,41:31:41:1.00:2
chr9	34725742	rs62547039	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,26:32:59:0.441:2	0/1:22,16:29:38:0.421:2	./.	0/1:33,22:32:55:0.400:2	0/1:36,17:31:53:0.321:2	0/1:0,46:31:46:1.00:2	0/1:33,25:31:58:0.431:2	0/1:72,4:31:76:0.053:2	0/1:46,34:31:80:0.425:2	0/1:0,44:32:44:1.00:2	0/1:0,44:32:44:1.00:2
chr9	34725875	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,6:30:73:0.082:2	./.	./.	./.	0/1:58,11:32:69:0.159:2	0/1:83,5:33:88:0.057:2	./.	./.
chr9	34726182	rs521630	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,70:33:185:0.378:2	./.	0/1:108,86:34:194:0.443:2	0/1:1,73:33:74:0.986:2	0/1:0,161:33:162:1.00:2
chr9	34726204	rs521574	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:147,5:32:152:0.033:2	0/1:91,5:32:96:0.052:2	0/1:33,3:33:36:0.083:2	0/1:159,10:29:169:0.059:2	0/1:79,8:30:87:0.092:2	0/1:0,12:33:12:1.00:2	./.	./.	./.	0/1:112,8:32:120:0.067:2	0/1:186,10:32:196:0.051:2
chr9	34726418	rs2937382	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,5:30:28:0.179:2	./.	0/1:28,7:26:35:0.200:2	./.	0/1:26,9:26:35:0.257:2
chr9	34726524	rs1810820	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,14:32:31:0.452:2	./.	0/1:16,25:32:41:0.610:2	0/1:14,19:32:33:0.576:2	0/1:13,18:32:31:0.581:2
chr9	34726620	rs200501328	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,23:27:55:0.418:2	./.	./.	./.	./.
chr9	34726671	rs1854574	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,29:32:54:0.537:2	0/1:9,10:32:19:0.526:2	0/1:0,4:32:4:1.00:2	0/1:53,25:32:80:0.321:2	0/1:43,18:32:61:0.295:2	./.	0/1:24,18:32:42:0.429:2	0/1:4,47:32:51:0.922:2	0/1:39,34:32:73:0.466:2	./.	./.
chr9	34726848	rs193234006	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,12:32:32:0.375:2	./.	./.	./.	./.	./.	./.
chr9	34838441	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:74,4:31:79:0.051:2	./.	./.	./.	./.	./.	./.
chr9	34838461	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,5:31:89:0.056:2	./.	./.	./.	./.	./.	./.
chr9	35042268	rs71521249	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,17:31:37:0.459:2	./.	./.	./.	./.	./.	./.
chr9	35043291	rs615474	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:32:65:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,82:30:82:1.00:2	0/1:29,37:31:66:0.561:2	0/1:0,73:31:73:1.00:2	0/1:3,81:32:84:0.964:2	0/1:0,65:31:65:1.00:2	0/1:42,15:32:57:0.263:2	0/1:0,59:32:59:1.00:2
chr9	35044493	rs2298312	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,28:30:55:0.509:2	0/1:18,12:30:30:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	35045126	rs116478544	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,40:31:74:0.541:2
chr9	35057441	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,4:32:47:0.085:2	./.	./.	./.	./.	./.	./.
chr9	35068334	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:32:156:0.026:2	./.	./.
chr9	35076755	rs2237857	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,19:31:46:0.413:2	./.	./.	./.	./.	./.	./.
chr9	35089403	rs2298314	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,33:31:49:0.673:2	0/1:14,9:32:23:0.391:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	35091819	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:31:36:0.111:2	./.	./.	./.
chr9	35091880	rs10814196	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:31:13:0.538:2	0/1:7,5:32:12:0.417:2	./.	./.	./.	0/1:16,7:30:23:0.304:2	0/1:7,9:29:16:0.563:2	./.	0/1:18,7:31:25:0.280:2	./.	0/1:10,17:31:27:0.630:2
chr9	35100673	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,12:30:19:0.632:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	35105257	rs7030595	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:51,54:32:105:0.514:2	0/1:19,27:32:46:0.587:2	./.	./.	0/1:73,57:32:130:0.438:2	./.	./.	./.	./.	0/1:99,4:33:103:0.039:2	./.
chr9	35107765	rs13287211	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,19:30:20:0.950:2	0/1:3,9:30:12:0.750:2	./.	0/1:6,10:31:17:0.625:2	0/1:10,5:29:15:0.333:2	0/1:9,7:31:16:0.438:2	./.	0/1:12,11:31:23:0.478:2
chr9	35107858	rs7039828	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,15:31:15:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,31:33:31:1.00:2
chr9	35228031	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:130,4:33:134:0.030:2	./.	./.	./.	./.	./.	./.
chr9	35377637	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:110,4:30:114:0.035:2	./.	./.	./.	./.	./.	./.
chr9	35378401	rs55720245	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,21:32:55:0.382:2	./.	./.	./.	./.
chr9	35398605	rs41315995	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,40:30:79:0.506:2	./.	./.	./.	./.	./.
chr9	35546735	rs1535422	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:33:89:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,8:34:8:1.00:2	0/1:0,102:33:102:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,124:33:124:1.00:2	0/1:1,128:33:129:0.992:2	0/1:3,135:33:138:0.978:2	0/1:0,97:34:97:1.00:2	0/1:0,100:33:100:1.00:2	0/1:1,103:33:104:0.990:2
chr9	35546789	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:110,4:33:114:0.035:2	./.	./.	./.	./.	./.	./.
chr9	35547646	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:30:62:0.065:2	./.
chr9	35555969	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:33:42:0.095:2	./.	./.	./.	./.	./.
chr9	35559213	rs2295842	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,36:31:38:0.947:2	0/1:0,25:31:25:1.00:2	./.	./.	./.	0/1:26,25:31:51:0.490:2	0/1:30,16:30:46:0.348:2	./.	0/1:32,21:30:53:0.396:2	0/1:30,18:31:48:0.375:2	./.
chr9	35563245	rs187370786	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,36:31:68:0.529:2	./.	./.	./.	./.	./.	./.
chr9	35606884	rs2275422	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,30:30:30:1.00:2	0/1:0,12:29:12:1.00:2	./.	./.	./.	0/1:20,22:29:42:0.524:2	0/1:21,21:30:42:0.500:2	0/1:26,24:29:51:0.480:2	0/1:0,26:30:26:1.00:2	0/1:10,14:31:24:0.583:2	0/1:21,11:31:32:0.344:2
chr9	35607339	rs184069844	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,43:32:88:0.489:2	./.	./.	./.	./.
chr9	35609346	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,4:28:82:0.049:2	./.	./.	./.	./.	./.	./.	./.
chr9	35609537	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,3:32:23:0.130:2	./.	./.	./.	./.	./.	./.	./.
chr9	35660901	rs2275420	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:14,17:31:31:0.548:2	0/1:13,6:32:19:0.316:2	./.	./.	./.	./.	./.	0/1:29,16:31:45:0.356:2	./.	./.	0/1:23,22:31:45:0.489:2
chr9	35660990	rs1339374	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,43:31:43:1.00:2	0/1:0,29:31:29:1.00:2	./.	0/1:0,51:31:51:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,47:31:47:1.00:2	0/1:1,36:32:37:0.973:2	0/1:2,65:31:67:0.970:2	0/1:0,36:31:36:1.00:2	./.	0/1:0,54:32:54:1.00:2
chr9	35661057	rs10441685	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,24:33:49:0.490:2	./.	./.	./.	./.	0/1:30,25:33:55:0.455:2
chr9	35661088	rs10441686	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,31:31:67:0.463:2
chr9	35661943	rs72727021	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:33,31:33:64:0.484:2	0/1:27,24:32:51:0.471:2	./.	./.	./.	./.	./.	0/1:63,37:33:100:0.370:2	./.	./.	./.
chr9	35662251	rs2297879	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,58:28:121:0.483:2	./.	0/1:77,41:29:119:0.347:2	0/1:71,61:28:132:0.462:2	./.	./.	./.	./.
chr9	35662256	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:159,4:31:163:0.025:2	./.	./.	./.	./.	./.	./.
chr9	35665153	rs45567235	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:5,6:32:11:0.545:2	0/1:0,5:32:5:1.00:2	./.	./.	./.	./.	./.	0/1:6,14:28:20:0.700:2	./.	./.	./.
chr9	35674053	rs2071676	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,29:32:63:0.460:2	0/1:20,12:29:32:0.375:2	./.	0/1:48,34:31:82:0.415:2	0/1:2,101:31:103:0.981:2	0/1:46,43:30:89:0.483:2	0/1:51,51:31:102:0.500:2	0/1:54,39:31:93:0.419:2	0/1:0,58:32:58:1.00:2	./.	0/1:32,26:31:58:0.448:2
chr9	35674101	rs12553173	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:21,27:32:48:0.563:2	0/1:13,15:32:28:0.536:2	./.	./.	./.	./.	./.	0/1:34,39:32:73:0.534:2	./.	./.	0/1:27,21:33:48:0.438:2
chr9	35674347	rs77984049	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,34:32:61:0.557:2
chr9	35679251	rs3829078	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:56,69:30:125:0.552:2	0/1:45,34:29:79:0.430:2	./.	./.	./.	./.	./.	0/1:96,77:29:173:0.445:2	./.	./.	./.
chr9	35683148	rs56249943	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:104,91:30:195:0.467:2	./.	./.	./.	0/1:105,86:31:192:0.450:2	./.	./.
chr9	35704150	rs10814270	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,21:32:57:0.368:2	./.	./.	./.
chr9	35704358	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,5:31:22:0.227:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	35704380	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2	./.	./.
chr9	35705759	rs11541908	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,21:31:45:0.467:2	./.	./.	0/1:17,18:31:35:0.514:2	./.	./.	./.	./.
chr9	35708425	rs35461988	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:34:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	35712003	rs2295795	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,6:29:23:0.261:2	./.	./.	0/1:31,5:32:36:0.139:2	./.	./.	./.	./.
chr9	35713015	rs201169620	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,9:17:57:0.158:2
chr9	35748669	rs34312177	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:38,32:33:70:0.457:2	0/1:13,21:32:34:0.618:2	./.	./.	./.	./.	./.	0/1:58,51:32:109:0.468:2	./.	./.	./.
chr9	35749845	rs2236288	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,43:32:102:0.422:2	0/1:38,36:32:74:0.486:2	./.	./.	./.	./.	0/1:42,38:31:80:0.475:2	./.
chr9	35752019	rs375988790	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,34:30:87:0.391:2
chr9	35752048	rs62620193	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,35:31:66:0.530:2	0/1:26,29:32:55:0.527:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	35792423	rs2228580	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,26:32:50:0.520:2	./.	./.	./.	./.	./.	0/1:17,20:32:37:0.541:2	./.
chr9	35802583	rs5812	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,95:32:199:0.477:2	./.	./.	./.	./.	./.	0/1:84,78:31:162:0.481:2	./.
chr9	35811228	rs41277075	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,13:32:41:0.317:2	./.	./.	./.	./.	0/1:24,24:32:48:0.500:2
chr9	35818894	rs186035105	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,20:30:29:0.690:2	./.	./.	./.	./.	./.	./.
chr9	35818996	rs10972591	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,15:32:27:0.556:2	./.
chr9	35826038	rs13294245	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,18:32:39:0.462:2	./.	./.	./.	./.	./.	0/1:19,17:30:36:0.472:2	./.
chr9	35826058	rs13294256	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,20:28:42:0.476:2	./.	./.	./.	./.	./.	0/1:19,13:29:32:0.406:2	./.
chr9	35841612	rs151064858	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,32:32:88:0.364:2	./.	./.	./.	./.	./.	./.	./.
chr9	35841783	rs2236293	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:35,36:33:71:0.507:2	0/1:39,20:31:59:0.339:2	./.	./.	0/1:58,53:32:112:0.477:2	./.	0/1:1,139:32:140:0.993:2	0/1:76,71:33:147:0.483:2	./.	0/1:43,45:33:88:0.511:2	0/1:55,59:32:114:0.518:2
chr9	35870001	rs7044405	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,30:28:81:0.370:2	0/1:33,21:30:54:0.389:2	./.	0/1:1,88:29:89:0.989:2	0/1:75,46:28:121:0.380:2	0/1:0,94:30:94:1.00:2	./.	0/1:57,42:30:99:0.424:2	0/1:0,91:31:91:1.00:2	0/1:1,75:30:76:0.987:2	0/1:39,38:30:77:0.494:2
chr9	35870225	rs72727089	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,37:33:85:0.435:2	0/1:30,19:31:49:0.388:2	0/1:7,6:33:13:0.462:2	0/1:85,68:32:153:0.444:2	0/1:57,78:32:135:0.578:2	./.	./.	0/1:61,83:32:144:0.576:2	0/1:0,102:33:102:1.00:2	./.	./.
chr9	35906315	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:33:43:0.093:2	./.	./.	./.	./.
chr9	35906471	rs76452347	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,19:29:43:0.442:2	./.	./.	./.	./.	./.
chr9	35906519	rs79284865	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,8:30:21:0.381:2	0/1:12,10:32:22:0.455:2	0/1:14,5:30:19:0.263:2	./.	./.	0/1:6,5:31:11:0.455:2
chr9	35906601	rs112212538	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:2,3:30:5:0.600:2	0/1:0,5:32:5:1.00:2	./.	0/1:0,3:33:3:1.00:2	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.
chr9	35906624	rs75458097	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,5:31:10:0.500:2	./.	./.	./.	./.
chr9	35906655	rs149557496	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,9:29:18:0.500:2
chr9	35906804	rs139404483	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,56:33:121:0.463:2	./.	./.	./.	./.	./.	./.	./.
chr9	35906984	rs144123850	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,23:31:54:0.426:2	./.	./.	./.	./.	./.	./.
chr9	35957355	rs2233568	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,8:30:12:0.667:2	0/1:64,51:32:115:0.443:2	./.	0/1:0,104:32:104:1.00:2	0/1:58,37:33:95:0.389:2	./.	0/1:70,49:34:119:0.412:2	0/1:66,47:33:113:0.416:2	0/1:0,116:32:116:1.00:2
chr9	35957669	rs2233564	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:27:7:0.571:2	0/1:44,49:28:93:0.527:2	./.	0/1:0,99:29:99:1.00:2	0/1:56,59:30:115:0.513:2	./.	0/1:53,42:29:97:0.442:2	0/1:39,33:29:73:0.458:2	0/1:0,69:29:69:1.00:2
chr9	35958047	rs2233558	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,4:32:8:0.500:2	0/1:41,34:32:75:0.453:2	./.	0/1:0,66:32:66:1.00:2	0/1:64,33:31:97:0.340:2	./.	0/1:49,45:32:94:0.479:2	0/1:35,32:31:67:0.478:2	0/1:0,77:32:77:1.00:2
chr9	36063812	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:33:107:0.037:2	./.
chr9	36083539	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:34:104:0.038:2	./.	./.
chr9	36087876	rs16932912	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,101:31:188:0.537:2	./.
chr9	36091234	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:32:116:0.035:2	./.
chr9	36105264	rs11788747	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,62:30:139:0.446:2	0/1:79,37:30:116:0.319:2	0/1:86,67:30:153:0.438:2	0/1:1,100:30:101:0.990:2	0/1:96,96:30:192:0.500:2	./.	0/1:61,47:30:108:0.435:2	0/1:2,145:30:147:0.986:2
chr9	36110063	rs10972727	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,82:31:156:0.526:2	0/1:95,77:31:172:0.448:2	0/1:88,92:30:180:0.511:2	0/1:0,143:31:143:1.00:2	0/1:92,75:31:167:0.449:2	./.	./.	0/1:2,150:31:152:0.987:2
chr9	36147871	rs16932994	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,14:31:31:0.452:2	0/1:8,7:31:15:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	36169598	rs3739609	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,45:30:116:0.388:2	0/1:45,35:29:80:0.438:2	0/1:11,5:31:16:0.313:2	0/1:91,83:30:174:0.477:2	0/1:96,95:29:192:0.497:2	./.	0/1:109,82:30:191:0.429:2	0/1:90,95:30:185:0.514:2	0/1:0,137:30:137:1.00:2	0/1:69,79:29:148:0.534:2	0/1:94,58:29:152:0.382:2
chr9	36169723	rs34789048	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:40,25:30:65:0.385:2	0/1:14,13:31:27:0.481:2	./.	./.	./.	./.	./.	0/1:65,21:30:87:0.244:2	./.	./.	./.
chr9	36170317	rs140578907	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,15:33:41:0.366:2	./.
chr9	36171092	rs61735202	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,36:32:70:0.514:2	./.	./.	./.	./.
chr9	36674842	rs2274473	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,13:31:29:0.448:2	0/1:12,7:31:19:0.368:2	0/1:0,2:32:2:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,27:32:27:1.00:2	0/1:14,15:31:29:0.517:2	0/1:28,13:33:41:0.317:2	0/1:0,17:31:17:1.00:2	0/1:0,41:32:41:1.00:2
chr9	36840623	rs3780135	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,12:32:24:0.500:2	0/1:11,7:31:18:0.389:2	0/1:0,3:31:3:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,15:30:15:1.00:2	0/1:8,14:30:22:0.636:2	0/1:0,15:32:15:1.00:2	0/1:15,17:31:32:0.531:2	0/1:0,16:32:16:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,21:32:21:1.00:2
chr9	37002745	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,9:27:83:0.108:2	./.	./.
chr9	37006455	rs41312838	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,12:31:24:0.500:2	./.	./.	./.	./.
chr9	37302155	rs10814518	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,17:32:36:0.472:2	0/1:14,11:31:25:0.440:2	./.	./.	./.	./.	./.	0/1:40,12:32:52:0.231:2
chr9	37305610	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,8:32:174:0.046:2	./.	./.	./.
chr9	37305663	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,6:32:186:0.032:2	./.	./.	./.
chr9	37354735	rs150280320	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:32:64:0.063:2	./.	./.
chr9	37354782	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:32:42:0.095:2	./.	./.
chr9	37354785	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:29:38:0.105:2	./.	./.
chr9	37424913	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,3:34:61:0.049:2	./.	./.	./.
chr9	37428544	rs142509393	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,21:32:40:0.525:2	./.
chr9	37429814	rs309458	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,14:32:14:1.00:2	0/1:0,7:28:7:1.00:2	0/1:0,3:29:3:1.00:2	0/1:0,21:29:21:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,23:29:23:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,27:30:27:1.00:2
chr9	37441455	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:101,4:31:105:0.038:2	./.	./.	./.	./.	./.	./.
chr9	37441650	rs17502738	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,30:31:55:0.545:2	0/1:12,14:31:26:0.538:2	./.	0/1:0,38:32:38:1.00:2	0/1:26,32:32:58:0.552:2	0/1:0,41:31:41:1.00:2	0/1:0,36:31:36:1.00:2	./.	./.	./.	./.
chr9	37441808	rs309450	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:30:103:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,72:30:72:1.00:2	0/1:0,92:30:92:1.00:2	0/1:0,94:30:94:1.00:2	0/1:0,87:29:87:1.00:2	0/1:0,99:29:99:1.00:2	0/1:0,104:31:104:1.00:2	0/1:0,106:30:106:1.00:2	0/1:0,120:30:120:1.00:2
chr9	37486603	rs1571234	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:89,95:31:185:0.516:2	0/1:59,69:31:128:0.539:2	0/1:0,34:32:34:1.00:2	./.	0/1:111,87:32:198:0.439:2	./.	0/1:109,89:31:198:0.449:2	0/1:110,89:32:199:0.447:2	0/1:0,186:32:186:1.00:2	0/1:1,184:32:185:0.995:2	0/1:1,183:30:184:0.995:2
chr9	37489378	rs11542231	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:37,25:30:62:0.403:2	0/1:19,19:32:38:0.500:2	./.	./.	./.	./.	0/1:31,26:28:57:0.456:2	./.	./.	./.	0/1:0,80:30:80:1.00:2
chr9	37492721	rs3739575	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,52:31:99:0.525:2	./.
chr9	37503124	rs7047823	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:30:89:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,109:30:109:1.00:2	0/1:0,109:30:109:1.00:2	0/1:0,105:30:105:1.00:2	0/1:0,111:30:111:1.00:2	0/1:0,124:30:125:1.00:2	0/1:0,110:31:111:1.00:2	0/1:0,94:31:94:1.00:2	0/1:0,103:31:103:1.00:2
chr9	37512595	rs371625911	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:32:155:0.026:2	./.	./.	./.	./.	./.
chr9	37521777	rs35979885	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,15:32:28:0.536:2	0/1:15,7:31:22:0.318:2	./.	0/1:19,26:31:45:0.578:2	0/1:40,18:30:58:0.310:2	0/1:13,26:30:39:0.667:2	0/1:35,38:32:73:0.521:2	./.	./.	./.	./.
chr9	37525118	rs79835897	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,5:32:15:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	37529141	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:165,7:30:172:0.041:2	./.	./.	./.	./.	./.	./.
chr9	37532023	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:32:97:0.041:2	./.	./.	./.
chr9	37537557	rs7044153	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,24:32:24:1.00:2	0/1:5,9:32:14:0.643:2	0/1:1,51:32:52:0.981:2	0/1:2,63:31:65:0.969:2	0/1:0,49:32:49:1.00:2	0/1:0,53:32:53:1.00:2	0/1:46,26:32:72:0.361:2	0/1:25,23:33:48:0.479:2	0/1:18,27:32:45:0.600:2	0/1:0,45:32:45:1.00:2
chr9	37592452	rs7021977	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,36:32:92:0.391:2	0/1:35,20:31:55:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	37692654	rs3747539	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,20:33:43:0.465:2	0/1:18,13:32:31:0.419:2	0/1:16,22:32:38:0.579:2	0/1:21,7:27:28:0.250:2	0/1:21,22:32:43:0.512:2	./.	./.	0/1:38,22:33:60:0.367:2
chr9	37729786	rs1359590	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,40:30:76:0.533:2	0/1:47,45:31:92:0.489:2	0/1:35,25:31:60:0.417:2	./.	0/1:44,31:32:75:0.413:2	./.	./.	0/1:12,19:32:31:0.613:2
chr9	37735680	rs61740795	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,28:33:61:0.459:2	./.	./.
chr9	37740637	rs2281872	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,7:28:17:0.412:2	./.	0/1:1,137:29:138:0.993:2	0/1:65,78:29:143:0.545:2	./.	./.	0/1:48,59:29:107:0.551:2	0/1:66,47:30:113:0.416:2	0/1:55,52:28:107:0.486:2
chr9	37745413	rs3747541	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,15:30:38:0.395:2	0/1:34,25:31:59:0.424:2	./.	./.	0/1:25,32:32:57:0.561:2	./.	0/1:39,33:31:72:0.458:2
chr9	37746746	rs150663101	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,18:32:46:0.391:2	./.	./.	./.	./.	./.	./.	./.
chr9	37770716	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,3:34:55:0.055:2	./.	./.	./.	./.	./.	./.	./.
chr9	37780831	rs3208406	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:26,30:33:56:0.536:2	0/1:14,22:33:36:0.611:2	./.	0/1:17,36:32:53:0.679:2	./.	./.	0/1:0,23:33:23:1.00:2	0/1:35,30:32:65:0.462:2	./.	0/1:20,25:33:45:0.556:2	./.
chr9	37782111	rs7158	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,32:30:73:0.438:2	0/1:46,41:31:87:0.471:2	./.	./.	0/1:76,38:30:114:0.333:2	./.	0/1:54,59:31:113:0.522:2
chr9	37801223	rs370374517	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,9:28:19:0.474:2	./.	./.	./.	./.	./.	./.	./.
chr9	37801261	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:31:38:0.105:2
chr9	37887862	rs4008243	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:132,34:32:166:0.205:2	0/1:89,26:33:115:0.226:2	0/1:33,8:28:41:0.195:2	0/1:143,16:30:159:0.101:2	0/1:117,24:32:141:0.170:2	0/1:117,28:32:145:0.193:2	0/1:100,20:32:120:0.167:2	0/1:132,19:33:151:0.126:2	0/1:149,15:31:164:0.091:2	0/1:107,20:32:127:0.157:2	0/1:160,35:33:195:0.179:2
chr9	37888529	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:123,4:32:127:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr9	37948724	rs3827519	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,28:33:52:0.538:2	./.	0/1:30,19:32:50:0.388:2	./.	./.	./.	./.	0/1:29,18:32:47:0.383:2
chr9	37974743	rs1138374	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,21:30:45:0.467:2	0/1:18,12:29:30:0.400:2	./.	0/1:0,74:29:74:1.00:2	0/1:34,40:28:74:0.541:2	0/1:49,32:29:82:0.395:2	0/1:1,60:29:61:0.984:2	0/1:56,42:29:98:0.429:2	0/1:47,42:30:89:0.472:2	0/1:27,28:27:55:0.509:2	0/1:32,39:29:71:0.549:2
chr9	38068532	rs3750444	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.
chr9	38395928	rs2073477	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:16,15:32:31:0.484:2	0/1:12,7:32:19:0.368:2	./.	./.	0/1:15,11:32:26:0.423:2	./.	./.	./.	./.	./.	0/1:14,11:29:25:0.440:2
chr9	38395940	rs2228094	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:28:30:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,41:29:41:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,27:28:27:1.00:2	0/1:0,40:29:40:1.00:2	0/1:0,37:28:37:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,25:29:25:1.00:2	0/1:0,25:28:25:1.00:2
chr9	38396002	rs2228093	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:5,5:28:10:0.500:2	0/1:11,5:30:16:0.313:2	0/1:4,3:29:7:0.429:2	./.	0/1:16,5:29:21:0.238:2	./.	./.	./.	./.	./.	0/1:6,11:28:17:0.647:2
chr9	38396065	rs2073478	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,13:27:27:0.481:2	0/1:8,11:31:19:0.579:2	./.	0/1:0,41:32:41:1.00:2	0/1:22,20:30:42:0.476:2	0/1:0,60:31:60:1.00:2	0/1:1,35:31:36:0.972:2	0/1:21,18:31:39:0.462:2	./.	0/1:0,37:31:37:1.00:2	0/1:13,28:31:41:0.683:2
chr9	38396372	rs145426005	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,27:32:54:0.500:2	./.	./.	./.	./.	./.	./.
chr9	38396502	rs4878199	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:31:51:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,67:30:67:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,54:32:54:1.00:2
chr9	38397355	rs3043	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,54:33:54:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,49:32:49:1.00:2	0/1:49,36:32:85:0.424:2	./.	0/1:2,58:33:60:0.967:2	0/1:2,74:33:76:0.974:2
chr9	38397915	rs7859877	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,42:32:67:0.627:2	0/1:33,13:32:46:0.283:2	./.	0/1:0,56:31:56:1.00:2	0/1:30,19:30:49:0.388:2	0/1:0,62:29:62:1.00:2	0/1:1,60:31:61:0.984:2	0/1:30,29:30:59:0.492:2	./.	0/1:0,54:31:54:1.00:2	0/1:35,46:31:81:0.568:2
chr9	38398150	rs10758495	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:117,80:31:197:0.406:2	0/1:54,44:29:98:0.449:2	0/1:14,7:30:21:0.333:2	./.	0/1:59,43:31:102:0.422:2	./.	./.	./.	./.	./.	0/1:109,84:29:193:0.435:2
chr9	38398304	rs10973781	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:33:8:0.500:2	./.	./.	./.
chr9	38527248	rs147844301	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,6:32:89:0.067:2	./.	./.	./.	0/1:78,4:32:82:0.049:2
chr9	38527267	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,5:31:93:0.054:2	./.	./.	./.	./.
chr9	38527813	rs372232706	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,6:32:37:0.162:2	./.	./.	./.	./.
chr9	38527857	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,4:33:20:0.200:2	./.	./.	./.	./.
chr9	38528113	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,4:32:61:0.066:2	./.	./.	./.	./.	./.	./.	./.
chr9	38528144	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,43:33:95:0.453:2	./.	./.
chr9	38528158	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,4:33:94:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr9	38528531	rs10814706	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:33:3:0.667:2	0/1:24,18:33:42:0.429:2	0/1:16,14:31:30:0.467:2	./.	./.	./.	./.	./.	0/1:1,69:33:70:0.986:2
chr9	38575602	rs12341435	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,7:33:29:0.241:2	./.	./.	./.	./.
chr9	38577092	rs2993206	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,77:33:160:0.481:2	./.	./.
chr9	38577101	rs2996335	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,77:32:164:0.470:2	./.	./.
chr9	38577902	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:31:65:0.063:2	./.	./.	./.
chr9	38577938	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:29:74:0.054:2	./.	./.
chr9	38578044	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:156,6:33:162:0.037:2	./.	./.	./.	./.	./.	./.	./.
chr9	38578106	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:175,8:32:183:0.044:2	0/1:108,4:31:113:0.036:2	./.	./.	./.	./.	./.	./.
chr9	38578113	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,4:30:107:0.037:2	./.	./.	./.	./.	./.	./.
chr9	38586222	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,6:29:198:0.030:2	./.	./.	./.	./.	./.	./.
chr9	38586247	rs150196189	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,94:33:199:0.472:2	./.	./.
chr9	38586255	rs1765392	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,6:30:198:0.030:2	0/1:191,5:32:196:0.026:2	./.	./.	./.	./.	./.
chr9	38586262	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.	./.	./.
chr9	38588602	rs2799163	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,3:32:14:0.214:2	./.	0/1:40,32:33:72:0.444:2	./.	./.	./.	./.	./.	./.
chr9	38595886	rs2996347	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.	0/1:61,38:32:99:0.384:2	./.	./.	0/1:134,4:32:138:0.029:2	./.	./.	./.
chr9	38596059	rs192086168	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,66:33:156:0.423:2	./.	./.
chr9	38596342	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,3:33:37:0.081:2	./.	./.	./.	./.
chr9	38601190	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:33:138:0.029:2
chr9	38603131	rs3005823	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,34:32:34:1.00:2	./.	0/1:178,22:31:200:0.110:2	./.	./.	0/1:111,86:32:197:0.437:2	0/1:132,61:33:193:0.316:2	./.	./.
chr9	38603165	rs632223	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:181,5:33:186:0.027:2	./.	./.	./.	./.	./.	./.
chr9	38603188	rs632200	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:190,6:32:196:0.031:2	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2
chr9	38603220	rs631858	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:191,6:29:197:0.030:2	0/1:192,6:31:198:0.030:2	./.	./.	./.	./.	0/1:191,5:28:196:0.026:2	0/1:188,6:28:194:0.031:2
chr9	38615629	rs148902919	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,36:31:112:0.321:2	./.	./.	./.	./.	./.	./.
chr9	38615698	rs1832313	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,13:30:13:1.00:2	0/1:55,47:29:102:0.461:2	0/1:66,27:29:93:0.290:2	0/1:65,71:29:136:0.522:2	0/1:59,40:30:99:0.404:2	0/1:70,64:29:134:0.478:2	0/1:83,40:31:124:0.325:2	./.	0/1:79,69:30:148:0.466:2
chr9	38615976	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.	./.
chr9	38620180	rs142303885	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,49:30:84:0.583:2	./.	./.	./.	./.	./.	./.	./.
chr9	38621344	rs1815549	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,8:29:19:0.421:2	0/1:0,4:32:4:1.00:2	0/1:7,4:29:11:0.364:2	0/1:4,12:30:16:0.750:2	./.	0/1:1,2:31:3:0.667:2
chr9	39078872	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.
chr9	39085764	rs2150942	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:175,23:31:198:0.116:2	./.	0/1:181,15:32:196:0.077:2	./.	./.	./.	0/1:176,17:30:193:0.088:2
chr9	39085808	rs199999906	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:193,6:28:199:0.030:2	0/1:146,52:31:198:0.263:2	./.	0/1:147,46:30:193:0.238:2	./.	./.	./.	0/1:155,37:32:193:0.193:2
chr9	39086695	rs2183892	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,78:32:180:0.433:2	./.	0/1:102,78:32:180:0.433:2	./.	./.	./.	0/1:130,69:33:199:0.347:2
chr9	39100051	rs201370424	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,3:32:25:0.120:2	0/1:133,10:32:143:0.070:2	0/1:149,14:32:163:0.086:2	0/1:136,18:32:154:0.117:2	./.	./.	0/1:146,19:32:165:0.115:2	./.	./.
chr9	39102531	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:166,24:31:190:0.126:2	0/1:177,21:31:198:0.106:2	0/1:81,6:30:87:0.069:2	./.	./.	0/1:182,15:31:197:0.076:2	0/1:185,13:32:198:0.066:2	./.	./.	0/1:173,17:33:190:0.089:2	0/1:176,20:31:196:0.102:2
chr9	39102543	rs199595353	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:154,35:31:189:0.185:2	0/1:168,20:32:188:0.106:2	0/1:73,19:32:92:0.207:2	./.	./.	./.	0/1:179,19:32:198:0.096:2	./.	./.	0/1:172,18:32:190:0.095:2	./.
chr9	39102567	rs201126171	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:183,16:32:199:0.080:2	0/1:180,18:32:198:0.091:2	./.	./.	0/1:180,15:30:196:0.077:2	0/1:171,26:31:197:0.132:2	0/1:178,14:30:192:0.073:2	0/1:175,18:29:193:0.093:2
chr9	39102618	rs200462507	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:136,48:32:184:0.261:2	0/1:143,53:31:196:0.270:2	0/1:90,29:31:119:0.244:2	0/1:131,57:32:188:0.303:2	0/1:141,54:32:195:0.277:2	0/1:140,57:31:197:0.289:2	0/1:145,48:33:193:0.249:2	0/1:131,66:32:197:0.335:2	./.	0/1:156,37:32:193:0.192:2	0/1:155,38:32:193:0.197:2
chr9	39103742	rs143450172	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:130,11:31:141:0.078:2	0/1:161,6:32:167:0.036:2	0/1:174,5:34:180:0.028:2	0/1:153,9:32:162:0.056:2	./.	./.	./.
chr9	39103743	rs7852039	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,4:32:88:0.045:2	./.	./.	0/1:72,71:31:143:0.497:2	./.	./.	./.	./.	./.	0/1:100,95:31:195:0.487:2
chr9	39103763	rs56870272	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:112,57:32:169:0.337:2	./.	./.	./.	./.	./.	./.
chr9	39103775	rs72721583	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,8:29:28:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	39103904	rs148916792	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:103,16:32:119:0.134:2	0/1:109,14:32:123:0.114:2	./.	0/1:126,12:29:138:0.087:2	0/1:93,8:31:101:0.079:2	0/1:121,14:30:135:0.104:2	0/1:118,16:31:134:0.119:2	0/1:126,7:30:133:0.053:2	./.	0/1:124,6:31:130:0.046:2	0/1:138,10:32:148:0.068:2
chr9	39109245	rs2778208	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,4:33:43:0.093:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	39118108	rs146758409	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:57,22:31:79:0.278:2	0/1:167,27:31:194:0.139:2	0/1:168,26:31:194:0.134:2	./.	0/1:168,30:30:198:0.152:2	0/1:160,30:31:190:0.158:2	./.	./.	./.
chr9	39118109	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,17:32:197:0.086:2	./.	./.	./.	./.	./.
chr9	39118196	rs146296802	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:70,87:31:157:0.554:2	0/1:72,107:32:179:0.598:2	./.	0/1:145,49:31:194:0.253:2	0/1:160,31:31:191:0.162:2	0/1:71,98:30:169:0.580:2	0/1:155,30:31:186:0.162:2	0/1:128,59:31:187:0.316:2	0/1:61,94:31:155:0.606:2	0/1:66,90:31:156:0.577:2	0/1:36,105:31:142:0.745:2
chr9	39118205	rs113579706	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,114:30:165:0.695:2	0/1:58,112:31:172:0.659:2	0/1:73,51:30:124:0.411:2	0/1:44,143:30:187:0.765:2	0/1:59,117:30:176:0.665:2	0/1:53,125:30:178:0.702:2	0/1:77,98:30:176:0.560:2	0/1:116,73:29:189:0.386:2	0/1:44,124:30:168:0.738:2	0/1:43,117:30:160:0.731:2	0/1:27,134:30:161:0.832:2
chr9	39118207	rs148861698	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,106:33:163:0.650:2	0/1:59,110:32:169:0.651:2	0/1:78,44:33:122:0.361:2	0/1:52,140:33:192:0.729:2	0/1:58,115:33:174:0.665:2	0/1:54,121:33:175:0.691:2	0/1:82,92:33:174:0.529:2	0/1:118,73:33:191:0.382:2	0/1:44,124:34:168:0.738:2	0/1:49,110:33:159:0.692:2	0/1:29,131:32:160:0.819:2
chr9	39140526	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,5:33:199:0.025:2	./.
chr9	39140589	rs1758287	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:135,29:30:165:0.177:2	0/1:134,10:29:144:0.069:2	./.	./.	./.	0/1:149,20:32:169:0.118:2	./.	./.
chr9	39144271	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:166,18:32:184:0.098:2	0/1:180,7:33:187:0.037:2	0/1:58,8:33:66:0.121:2	0/1:177,11:31:188:0.059:2	0/1:182,14:32:196:0.071:2	0/1:173,15:32:188:0.080:2	0/1:175,21:30:196:0.107:2	0/1:183,12:32:195:0.062:2	0/1:185,6:33:191:0.031:2	0/1:153,34:32:187:0.182:2	0/1:179,10:32:190:0.053:2
chr9	39144276	.	A	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:165,18:31:183:0.098:2	0/1:177,8:30:185:0.043:2	0/1:68,4:32:72:0.056:2	./.	./.	./.	0/1:176,19:31:195:0.097:2	0/1:186,6:29:192:0.031:2	./.	./.	0/1:180,14:32:194:0.072:2
chr9	39149855	.	C	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:160,20:29:180:0.111:2	0/1:132,29:31:161:0.180:2	0/1:46,8:29:54:0.148:2	0/1:170,22:30:192:0.115:2	./.	0/1:171,16:30:187:0.086:2	0/1:173,22:31:195:0.113:2	0/1:145,40:30:185:0.216:2	./.	0/1:165,27:31:192:0.141:2	0/1:157,35:30:192:0.182:2
chr9	39149925	rs201640644	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:164,7:29:171:0.041:2	0/1:165,16:28:181:0.088:2	0/1:37,3:32:40:0.075:2	0/1:159,39:29:198:0.197:2	./.	0/1:171,5:27:176:0.028:2	0/1:173,11:30:184:0.060:2	0/1:144,39:31:183:0.213:2	./.	0/1:155,27:31:182:0.148:2	0/1:170,11:31:181:0.061:2
chr9	39171471	rs143761191	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,83:32:180:0.461:2	./.	./.	./.	./.	./.
chr9	39171477	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:191,5:32:196:0.026:2	./.	./.	./.	./.	0/1:185,6:32:191:0.031:2	./.	./.	./.	./.
chr9	39177438	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:176,16:33:192:0.083:2	0/1:158,17:33:175:0.097:2	0/1:60,5:31:65:0.077:2	0/1:183,12:32:195:0.062:2	0/1:179,15:31:194:0.077:2	0/1:181,11:29:192:0.057:2	0/1:171,26:31:197:0.132:2	0/1:171,27:32:198:0.136:2	0/1:169,18:33:187:0.096:2	0/1:166,18:33:184:0.098:2	0/1:175,7:31:182:0.038:2
chr9	39193147	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:177,5:32:182:0.027:2	./.	./.	./.	./.	./.	./.
chr9	39239052	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:133,8:32:141:0.057:2	./.	./.	./.	./.	./.	./.	./.
chr9	39266927	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,44:32:178:0.247:2	0/1:89,48:31:137:0.350:2	./.	0/1:140,47:32:187:0.251:2	./.	./.	./.	./.
chr9	39266976	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,10:29:127:0.079:2	./.	./.	0/1:99,13:33:112:0.116:2	./.	./.
chr9	39266990	.	G	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:111,7:31:118:0.059:2	0/1:75,9:33:84:0.107:2	./.	0/1:86,6:33:92:0.065:2	0/1:65,7:29:72:0.097:2	0/1:110,7:33:118:0.060:2	0/1:76,7:34:83:0.084:2	0/1:117,7:32:124:0.056:2	./.	0/1:99,4:29:103:0.039:2	0/1:108,7:33:115:0.061:2
chr9	39357770	rs199634585	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:14,9:32:23:0.391:2	0/1:4,4:32:8:0.500:2	./.	0/1:9,6:31:15:0.400:2	./.	0/1:7,5:29:12:0.417:2	./.	0/1:7,3:33:10:0.300:2	0/1:13,5:29:18:0.278:2	./.	0/1:4,12:32:16:0.750:2
chr9	39358131	rs199681025	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,75:28:121:0.620:2	./.
chr9	39358265	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:32:47:0.085:2	./.
chr9	39358337	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,3:34:34:0.088:2	./.	./.	./.	./.
chr9	39358546	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,9:27:22:0.409:2	./.	./.	./.	./.	./.	./.	./.
chr9	39359254	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	./.	0/1:3,3:34:6:0.500:2	./.	./.	./.	./.
chr9	39359641	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:32:11:0.273:2	./.	./.	./.	0/1:17,3:31:20:0.150:2	./.	./.	./.
chr9	39360061	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,4:30:27:0.148:2	./.
chr9	39360612	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	./.	./.	0/1:5,3:34:8:0.375:2	./.	./.
chr9	39360949	rs200551382	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	0/1:0,5:29:5:1.00:2	./.	0/1:0,3:29:3:1.00:2	./.	./.	0/1:0,3:27:3:1.00:2
chr9	39361076	rs200116475	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,51:32:102:0.500:2
chr9	39361204	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,5:32:199:0.025:2	./.	./.	./.
chr9	39361247	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,4:34:31:0.129:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	39361466	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,9:31:31:0.300:2	./.
chr9	39361536	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,4:31:15:0.267:2	./.	./.
chr9	39361591	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,2:35:6:0.333:2
chr9	39444673	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,16:29:77:0.208:2	./.	./.	./.	./.	./.	./.
chr9	39444966	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,3:31:13:0.231:2	./.	./.	0/1:24,23:30:47:0.489:2	0/1:25,24:32:49:0.490:2	./.	0/1:20,37:31:57:0.649:2	0/1:36,24:31:60:0.400:2	./.
chr9	39445010	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:47,25:30:72:0.347:2	0/1:28,14:33:42:0.333:2	./.	./.	0/1:38,6:31:44:0.136:2	./.	0/1:50,21:31:71:0.296:2	0/1:44,25:31:69:0.362:2	./.	./.	./.
chr9	39445739	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,3:34:66:0.045:2	./.	./.	./.	./.	./.	./.	./.
chr9	39446117	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,23:32:74:0.311:2	./.	./.	./.	./.	./.
chr9	39446126	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,38:32:130:0.292:2
chr9	39446545	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:47,71:31:118:0.602:2	0/1:37,25:31:62:0.403:2	./.	./.	0/1:28,27:30:55:0.491:2	./.	0/1:37,27:31:64:0.422:2	0/1:59,33:31:92:0.359:2	./.	./.	./.
chr9	39446809	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,49:32:155:0.316:2	./.	./.	./.
chr9	39446875	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:33:180:0.022:2
chr9	39887382	rs199666589	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,59:30:191:0.311:2	./.
chr9	39887478	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:26:10:0.300:2	./.	0/1:1,2:33:3:0.667:2	./.	0/1:1,3:33:4:0.750:2
chr9	39887797	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,3:31:26:0.115:2	./.	./.	./.	./.	./.	./.
chr9	39888505	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	./.	./.	./.	./.	./.
chr9	39888848	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:29:10:0.300:2	./.
chr9	39888892	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,4:33:18:0.222:2	./.	./.
chr9	39888962	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:31:12:0.250:2	./.	./.	./.	./.	./.	./.	./.
chr9	39889085	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,5:32:14:0.357:2	./.	./.	./.	./.	./.	./.	./.
chr9	39889312	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,4:32:32:0.125:2	./.
chr9	39890304	rs201178432	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,3:31:15:0.200:2	./.	./.	./.	./.	./.	./.
chr9	39890309	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,5:30:24:0.208:2	0/1:19,5:31:24:0.208:2	./.	./.	./.	0/1:12,5:31:17:0.294:2	./.	0/1:16,5:29:21:0.238:2	0/1:23,6:31:29:0.207:2	0/1:14,5:31:19:0.263:2	0/1:28,3:33:31:0.097:2
chr9	39890327	rs202096173	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,6:34:52:0.115:2
chr9	39890330	rs200324517	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:27,13:33:40:0.325:2	0/1:28,5:33:33:0.152:2	0/1:2,4:32:6:0.667:2	./.	./.	./.	0/1:34,13:32:47:0.277:2	./.	0/1:34,7:34:41:0.171:2	0/1:17,10:33:27:0.370:2	./.
chr9	40702760	rs192661010	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,131:33:138:0.949:2	./.	0/1:92,74:33:166:0.446:2	0/1:134,47:34:181:0.260:2	0/1:95,58:33:153:0.379:2	0/1:61,93:34:154:0.604:2	0/1:161,35:33:196:0.179:2	./.
chr9	40702775	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,5:29:145:0.035:2	0/1:116,7:30:123:0.057:2	./.	./.	./.	./.	./.	./.
chr9	40702846	rs200010477	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,22:31:96:0.229:2	./.
chr9	40703031	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,6:32:69:0.087:2	./.	./.	./.	0/1:65,4:30:69:0.058:2	./.	0/1:77,4:32:81:0.049:2	0/1:42,6:31:48:0.125:2
chr9	40703127	rs200152887	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,3:32:26:0.115:2	0/1:27,3:31:30:0.100:2	./.	./.	./.	./.	./.	./.
chr9	40703280	rs199955241	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,3:31:8:0.375:2
chr9	40703622	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.
chr9	40703785	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.
chr9	40705193	rs200314502	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:10,8:29:18:0.444:2	./.	./.	0/1:3,10:30:13:0.769:2	./.	0/1:11,6:31:17:0.353:2	./.	0/1:12,8:30:20:0.400:2	0/1:15,3:35:18:0.167:2	./.	0/1:11,4:30:15:0.267:2
chr9	40705251	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:12,14:32:26:0.538:2	0/1:11,5:33:16:0.313:2	./.	0/1:9,12:31:21:0.571:2	./.	0/1:25,6:30:31:0.194:2	./.	0/1:28,5:30:33:0.152:2	0/1:15,6:32:21:0.286:2	./.	./.
chr9	40705431	rs202193882	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,3:31:17:0.176:2	./.	0/1:11,4:30:15:0.267:2	./.
chr9	40705785	rs202092534	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,67:32:190:0.353:2	./.	0/1:127,60:32:187:0.321:2	./.
chr9	40705798	rs201218409	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,54:32:198:0.273:2	0/1:115,79:32:194:0.407:2
chr9	40706047	rs202084999	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,5:32:43:0.116:2	./.
chr9	40706117	rs201679456	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:15,5:31:20:0.250:2	0/1:6,4:32:10:0.400:2	./.	./.	./.	./.	./.	0/1:11,4:26:15:0.267:2	0/1:10,4:26:14:0.286:2	./.	./.
chr9	40706227	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,4:31:16:0.250:2	./.	./.	./.	./.	./.
chr9	40715869	rs201587798	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:31:63:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,30:32:30:1.00:2	0/1:1,42:33:43:0.977:2	0/1:0,49:32:49:1.00:2	0/1:40,10:32:51:0.200:2	0/1:0,38:32:38:1.00:2
chr9	40715882	rs78730316	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,3:29:9:0.333:2	0/1:85,43:29:128:0.336:2	0/1:33,32:29:65:0.492:2	0/1:65,28:29:93:0.301:2	./.	./.	./.	./.	./.
chr9	40715896	rs72509212	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,5:32:18:0.278:2	0/1:120,71:30:191:0.372:2	0/1:53,43:31:96:0.448:2	0/1:75,47:31:122:0.385:2	./.	./.	./.	./.	./.
chr9	40715909	rs200376235	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,25:32:108:0.231:2	./.
chr9	40715914	rs62565542	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,27:30:116:0.233:2	./.
chr9	40715924	rs62565543	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:154,6:31:160:0.038:2	./.	0/1:93,6:33:99:0.061:2	./.	./.	0/1:133,8:32:141:0.057:2	0/1:87,6:34:93:0.065:2
chr9	40715926	rs62566171	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:158,6:30:164:0.037:2	./.	0/1:102,6:30:108:0.056:2	./.	./.	0/1:139,8:31:147:0.054:2	0/1:95,6:32:101:0.059:2
chr9	40715937	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,5:33:155:0.032:2
chr9	40715944	rs62566172	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:147,24:29:171:0.140:2	0/1:151,15:30:166:0.090:2	0/1:124,30:29:154:0.195:2	./.	./.	0/1:144,15:29:159:0.094:2	0/1:122,33:27:155:0.213:2
chr9	40716147	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,52:33:195:0.267:2	./.	./.	./.	./.	./.
chr9	40716224	rs144118204	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,96:31:105:0.914:2	0/1:12,83:32:95:0.874:2	0/1:12,14:31:26:0.538:2	0/1:70,117:31:187:0.626:2	0/1:120,42:31:162:0.259:2	0/1:107,53:31:160:0.331:2	0/1:60,53:30:113:0.469:2	0/1:80,65:31:145:0.448:2	0/1:17,126:32:143:0.881:2	./.	0/1:81,81:31:162:0.500:2
chr9	40772275	rs139779674	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:34:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	40772563	rs77619302	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:73,75:32:148:0.507:2	0/1:42,46:32:88:0.523:2	./.	./.	./.	./.	0/1:58,40:32:98:0.408:2	./.	./.	0/1:115,46:32:161:0.286:2	./.
chr9	40772608	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,4:31:85:0.047:2	./.	./.	0/1:56,10:30:66:0.152:2	./.	./.	0/1:97,4:31:101:0.040:2	./.	./.	./.
chr9	40773337	rs78487056	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,90:32:91:0.989:2	./.	0/1:55,46:32:101:0.455:2	./.	./.	0/1:12,69:33:81:0.852:2	0/1:91,27:31:118:0.229:2	0/1:69,51:32:120:0.425:2
chr9	40773715	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,15:32:69:0.221:2	./.	./.	./.	./.	./.
chr9	40773724	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,38:32:119:0.319:2
chr9	40774068	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,5:33:185:0.027:2	./.	./.	./.
chr9	40774092	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.
chr9	40774395	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,20:33:200:0.100:2	./.	./.	./.
chr9	40774857	.	C	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,7:29:99:0.071:2	./.	./.	0/1:85,16:32:101:0.158:2	0/1:88,10:31:98:0.102:2	./.
chr9	40775035	rs201851610	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,6:33:6:1.00:2	0/1:0,7:32:7:1.00:2	./.	0/1:0,6:31:6:1.00:2	0/1:39,5:32:44:0.114:2	0/1:33,6:32:39:0.154:2	0/1:0,5:32:5:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,10:30:10:1.00:2
chr9	40784183	rs4339693	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,24:33:24:1.00:2	0/1:0,8:32:8:1.00:2	./.	0/1:0,20:32:20:1.00:2	0/1:21,7:32:28:0.250:2	0/1:43,10:32:53:0.189:2	0/1:0,12:32:12:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,19:33:19:1.00:2	0/1:1,18:32:19:0.947:2	0/1:0,25:32:25:1.00:2
chr9	40784589	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:30:142:0.028:2	./.	./.	./.	./.	./.
chr9	41321420	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,3:30:14:0.214:2	./.	./.	./.	./.	./.
chr9	41321849	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,36:32:155:0.232:2	0/1:137,33:31:170:0.194:2
chr9	41321862	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,26:33:143:0.182:2	./.	0/1:105,21:32:126:0.167:2	./.
chr9	41322013	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:53,15:31:68:0.221:2	0/1:23,8:31:31:0.258:2	0/1:2,4:30:6:0.667:2	./.	0/1:24,8:31:32:0.250:2	0/1:23,13:31:36:0.361:2	0/1:18,8:30:26:0.308:2	./.	./.	./.	./.
chr9	41322396	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,7:33:22:0.318:2	./.	./.
chr9	41323005	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,3:33:20:0.150:2	./.
chr9	41323469	rs202207548	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,3:32:14:0.214:2	./.
chr9	41323789	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.
chr9	41324616	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,19:32:33:0.576:2	0/1:10,5:30:15:0.333:2	./.	0/1:19,16:31:35:0.457:2	0/1:13,3:31:16:0.188:2	0/1:23,20:31:43:0.465:2	./.	0/1:4,23:31:27:0.852:2	./.	0/1:4,12:32:16:0.750:2	0/1:4,13:32:17:0.765:2
chr9	41324697	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,16:31:36:0.444:2	0/1:10,3:31:13:0.231:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	41324729	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,4:28:31:0.129:2	./.	./.	./.	./.
chr9	41324872	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:130,4:33:134:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr9	41503145	.	T	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,34:32:108:0.315:2	./.	0/1:110,22:32:132:0.167:2	0/1:95,12:32:107:0.112:2	0/1:94,7:32:101:0.069:2	0/1:101,23:33:124:0.185:2	0/1:85,17:33:102:0.167:2	./.
chr9	41503160	.	T	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,55:32:90:0.611:2	0/1:46,24:32:70:0.343:2	./.	./.	0/1:71,26:32:97:0.268:2	0/1:30,50:32:80:0.625:2	0/1:36,26:32:62:0.419:2	0/1:83,40:32:123:0.325:2
chr9	41503231	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:32:47:0.085:2	./.
chr9	41503416	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,6:28:16:0.375:2	0/1:12,8:32:20:0.400:2	./.	0/1:11,11:32:22:0.500:2	0/1:6,6:31:12:0.500:2	0/1:21,17:31:38:0.447:2	./.	0/1:3,34:31:37:0.919:2	./.	0/1:3,9:31:12:0.750:2	0/1:4,5:33:9:0.556:2
chr9	41503665	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:34:4:0.750:2	./.
chr9	41504170	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:33:6:0.667:2	./.
chr9	41504196	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,3:32:16:0.188:2	./.	./.	./.
chr9	41504618	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.
chr9	41505029	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	41505578	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,4:33:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:11,4:31:15:0.267:2	./.	./.
chr9	41505636	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,5:34:15:0.333:2	./.	./.	./.	./.	0/1:19,4:28:23:0.174:2	./.	./.	0/1:18,6:32:24:0.250:2	./.	0/1:21,5:29:26:0.192:2
chr9	41506019	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:54,11:31:65:0.169:2	0/1:24,10:31:34:0.294:2	./.	./.	0/1:31,17:29:48:0.354:2	0/1:54,13:31:67:0.194:2	0/1:29,7:29:36:0.194:2	./.	./.	./.	./.
chr9	41506170	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,36:32:198:0.182:2	./.	0/1:140,52:32:192:0.271:2	./.
chr9	41506183	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,27:32:195:0.138:2	0/1:146,50:32:196:0.255:2
chr9	41506383	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:33:47:0.085:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	41506502	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,3:28:16:0.188:2
chr9	41589692	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,16:31:72:0.222:2	./.	./.	./.	./.	./.	./.
chr9	41589985	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:31:10:0.500:2	./.	./.	0/1:27,26:31:53:0.491:2	0/1:25,7:30:32:0.219:2	./.	0/1:37,38:32:75:0.507:2	0/1:35,23:32:58:0.397:2	./.
chr9	41590029	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:40,25:32:65:0.385:2	0/1:17,10:31:27:0.370:2	./.	./.	0/1:29,21:31:50:0.420:2	./.	0/1:23,11:32:34:0.324:2	0/1:52,17:31:69:0.246:2	./.	./.	./.
chr9	41590758	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,6:32:86:0.070:2	./.	./.	./.	./.	0/1:74,5:34:79:0.063:2	./.	./.
chr9	41591136	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,23:33:106:0.217:2	./.	./.	./.	./.	./.
chr9	41591145	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,24:32:130:0.185:2
chr9	41591564	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:50,31:31:81:0.383:2	0/1:28,20:31:48:0.417:2	./.	./.	0/1:37,27:30:64:0.422:2	./.	0/1:34,28:31:62:0.452:2	0/1:46,59:31:105:0.562:2	./.	./.	./.
chr9	41591828	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,52:32:119:0.437:2	./.	./.	./.
chr9	42368530	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,28:28:172:0.163:2	./.	./.	./.	./.	./.
chr9	42368549	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,40:31:110:0.364:2	0/1:53,40:30:93:0.430:2	0/1:7,7:30:14:0.500:2	0/1:84,31:31:115:0.270:2	./.	0/1:123,26:31:149:0.174:2	./.	0/1:94,29:31:123:0.236:2	./.	./.	0/1:87,24:31:111:0.216:2
chr9	42368600	rs75596179	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,9:30:55:0.164:2	0/1:42,12:30:54:0.222:2	./.	./.	./.	0/1:43,11:31:54:0.204:2	./.	./.
chr9	42368614	rs200348657	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,5:32:39:0.128:2	./.	./.	0/1:31,5:32:36:0.139:2	0/1:13,6:29:19:0.316:2	0/1:25,3:31:28:0.107:2
chr9	42380179	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:34:131:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	42410046	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,8:32:43:0.186:2	0/1:23,3:32:26:0.115:2	./.	0/1:68,9:32:77:0.117:2	0/1:43,7:33:50:0.140:2	0/1:48,9:31:57:0.158:2	0/1:31,4:30:35:0.114:2	0/1:43,5:33:48:0.104:2	0/1:55,8:33:63:0.127:2	./.	0/1:47,7:33:54:0.130:2
chr9	42410110	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,4:33:51:0.078:2	./.	./.	./.	./.	./.	./.	./.
chr9	42410119	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,5:30:32:0.156:2	./.	./.	./.
chr9	42410290	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2
chr9	42410368	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:28:7:0.429:2	./.	0/1:2,3:31:5:0.600:2	./.
chr9	42671895	.	A	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:91,24:31:115:0.209:2	0/1:46,12:32:58:0.207:2	./.	0/1:160,13:28:173:0.075:2	0/1:92,12:31:104:0.115:2	0/1:151,20:31:171:0.117:2	0/1:69,9:32:78:0.115:2	0/1:132,16:32:149:0.108:2	0/1:181,14:32:195:0.072:2	0/1:173,11:32:184:0.060:2	0/1:180,10:31:190:0.053:2
chr9	42671960	.	C	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,30:30:61:0.500:2	0/1:17,22:32:39:0.564:2	0/1:3,2:35:5:0.400:2	0/1:47,29:31:76:0.382:2	0/1:15,37:30:53:0.712:2	0/1:29,45:31:74:0.608:2	0/1:15,39:30:55:0.722:2	0/1:26,46:32:73:0.639:2	0/1:60,35:31:95:0.368:2	0/1:63,30:30:95:0.323:2	0/1:17,63:31:82:0.788:2
chr9	42718072	.	C	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,39:31:111:0.351:2	0/1:36,23:31:59:0.390:2	0/1:15,6:31:21:0.286:2	0/1:130,41:30:171:0.240:2	0/1:84,37:31:121:0.306:2	0/1:126,57:30:183:0.311:2	0/1:88,55:31:143:0.385:2	0/1:114,41:31:155:0.265:2	0/1:83,53:32:136:0.390:2	0/1:101,29:30:130:0.223:2	0/1:59,29:32:88:0.330:2
chr9	42718200	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:125,19:32:144:0.132:2	0/1:73,25:32:98:0.255:2	./.	./.	0/1:155,28:29:183:0.153:2	0/1:156,27:30:183:0.148:2	0/1:146,33:30:179:0.184:2	./.	0/1:122,53:31:175:0.303:2	0/1:116,55:31:171:0.322:2	0/1:130,27:31:157:0.172:2
chr9	42718314	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:21,3:32:24:0.125:2	./.	./.	./.	./.	0/1:43,4:32:47:0.085:2	./.	./.	0/1:63,5:28:68:0.074:2	./.
chr9	42718387	.	A	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,10:29:122:0.082:2	0/1:85,8:26:93:0.086:2	./.	0/1:69,5:30:74:0.068:2	./.	0/1:79,10:29:89:0.112:2	0/1:71,6:27:77:0.078:2	./.
chr9	42718394	.	C	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,11:24:58:0.190:2	0/1:24,4:28:28:0.143:2	0/1:20,3:30:23:0.130:2	0/1:112,15:28:127:0.118:2	0/1:97,8:27:105:0.076:2	0/1:83,16:28:99:0.162:2	0/1:73,16:26:89:0.180:2	0/1:92,15:27:107:0.140:2	0/1:81,11:29:92:0.120:2	0/1:62,21:28:83:0.253:2	0/1:51,9:27:60:0.150:2
chr9	42718563	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,10:31:63:0.159:2	./.	./.
chr9	42718608	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,5:30:29:0.172:2	./.
chr9	42718904	.	G	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,4:34:4:1.00:2	./.	./.	0/1:3,4:31:7:0.571:2	0/1:1,4:28:5:0.800:2	0/1:1,15:32:16:0.938:2	0/1:1,9:31:10:0.900:2	0/1:1,8:31:9:0.889:2	./.	./.	./.
chr9	42719198	.	T	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:110,12:27:123:0.098:2	0/1:91,5:26:96:0.052:2	./.	0/1:168,6:26:174:0.034:2	0/1:176,8:27:184:0.043:2	0/1:161,7:28:168:0.042:2	./.	0/1:173,13:27:186:0.070:2	./.	0/1:127,7:28:134:0.052:2	0/1:106,6:23:112:0.054:2
chr9	42719282	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,8:31:45:0.178:2	./.
chr9	42719333	.	G	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,10:29:40:0.250:2	0/1:23,8:32:31:0.258:2	./.	0/1:57,10:31:67:0.149:2	0/1:46,6:33:52:0.115:2	0/1:51,13:30:64:0.203:2	0/1:39,6:32:45:0.133:2	0/1:52,12:32:64:0.188:2	0/1:35,10:32:45:0.222:2	0/1:29,9:32:38:0.237:2	0/1:46,4:32:50:0.080:2
chr9	42719471	.	C	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:77,15:32:94:0.163:2	0/1:30,9:31:41:0.231:2	./.	0/1:70,13:32:83:0.157:2	0/1:65,8:34:75:0.110:2	0/1:75,12:33:87:0.138:2	0/1:66,12:33:79:0.154:2	0/1:73,10:33:84:0.120:2	./.	0/1:56,12:33:68:0.176:2	0/1:75,18:33:94:0.194:2
chr9	42719520	.	C	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:143,19:29:162:0.117:2	0/1:70,19:30:89:0.213:2	0/1:31,5:29:36:0.139:2	0/1:167,30:30:197:0.152:2	0/1:125,23:30:148:0.155:2	0/1:149,48:29:197:0.244:2	0/1:131,22:29:153:0.144:2	0/1:161,32:29:193:0.166:2	0/1:157,41:31:198:0.207:2	0/1:153,42:31:195:0.215:2	0/1:158,41:30:199:0.206:2
chr9	42719528	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,6:35:194:0.031:2	./.	./.
chr9	42719583	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,5:29:166:0.030:2	./.	./.	./.	./.	./.
chr9	42719622	.	C	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:179,12:31:191:0.063:2	0/1:162,12:31:174:0.069:2	./.	0/1:190,8:30:198:0.040:2	0/1:190,6:30:196:0.031:2	0/1:189,7:30:196:0.036:2	0/1:185,11:31:196:0.056:2	0/1:188,5:30:193:0.026:2	./.	0/1:189,8:32:197:0.041:2	0/1:185,7:31:192:0.036:2
chr9	42719629	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:117,56:32:173:0.324:2	0/1:109,60:32:169:0.355:2	0/1:42,13:31:55:0.236:2	0/1:150,48:31:198:0.242:2	0/1:115,81:31:196:0.413:2	0/1:109,86:31:195:0.441:2	0/1:103,91:32:194:0.469:2	0/1:77,112:32:189:0.593:2	0/1:152,42:33:194:0.216:2	0/1:162,32:32:194:0.165:2	0/1:94,92:31:186:0.495:2
chr9	42719755	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:149,14:33:163:0.086:2	0/1:89,9:32:98:0.092:2	./.	./.	./.	./.	0/1:168,5:32:173:0.029:2	0/1:134,5:31:139:0.036:2	./.	./.	0/1:162,5:34:167:0.030:2
chr9	42719780	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:32:166:0.024:2	./.
chr9	42719793	.	G	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:127,27:32:154:0.175:2	0/1:83,15:32:98:0.153:2	0/1:26,3:32:29:0.103:2	0/1:159,10:33:169:0.059:2	0/1:118,4:31:122:0.033:2	0/1:151,7:31:158:0.044:2	0/1:141,10:32:151:0.066:2	0/1:153,8:29:161:0.050:2	0/1:180,11:33:191:0.058:2	0/1:156,8:32:164:0.049:2	0/1:166,12:33:179:0.067:2
chr9	42719803	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,6:33:186:0.032:2	./.
chr9	42719804	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,10:27:165:0.061:2	0/1:93,9:32:102:0.088:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	42719863	.	C	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:110,48:34:158:0.304:2	0/1:80,29:32:109:0.266:2	0/1:28,4:33:32:0.125:2	0/1:177,10:33:187:0.053:2	0/1:137,7:30:144:0.049:2	./.	0/1:168,22:33:190:0.116:2	0/1:158,24:32:182:0.132:2	0/1:170,6:34:176:0.034:2	0/1:187,7:31:194:0.036:2	0/1:160,17:34:177:0.096:2
chr9	42719865	.	C	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:116,45:32:161:0.280:2	0/1:83,27:32:110:0.245:2	0/1:29,3:32:32:0.094:2	0/1:180,8:31:188:0.043:2	0/1:137,6:31:143:0.042:2	./.	0/1:167,19:32:186:0.102:2	0/1:164,21:31:185:0.114:2	0/1:170,6:32:176:0.034:2	./.	0/1:160,13:31:173:0.075:2
chr9	42719874	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,7:30:186:0.038:2	./.
chr9	42719903	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,5:32:136:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	42719906	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:34:105:0.038:2	./.	./.	./.	0/1:111,4:34:115:0.035:2	./.
chr9	42719922	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:119,4:31:123:0.033:2	./.	./.	0/1:91,4:30:95:0.042:2	./.	./.	./.	./.	./.	./.	./.
chr9	42719943	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:31:63:0.063:2	./.	./.	./.	./.	./.
chr9	42719951	.	A	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:66,7:29:73:0.096:2	0/1:40,5:31:45:0.111:2	./.	./.	0/1:44,4:32:48:0.083:2	0/1:52,11:32:63:0.175:2	./.	0/1:61,7:33:68:0.103:2	0/1:83,5:31:88:0.057:2	0/1:52,7:33:59:0.119:2	0/1:73,10:32:83:0.120:2
chr9	42719957	.	G	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:57,9:31:66:0.136:2	0/1:37,4:31:41:0.098:2	./.	./.	./.	./.	0/1:38,5:30:43:0.116:2	./.	0/1:72,7:31:79:0.089:2	./.	0/1:66,8:31:74:0.108:2
chr9	42719973	.	T	G,C	.	PASS	AC=5,1;AF=0.278,0.056;AN=18;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	0/1:33:50:0.149:2	0/1:31:33:0.121:2	./.	0/1:34:33:0.094:2	./.	./.	0/2:28:30:0.133:2	0/1:31:41:0.179:2	./.	./.	0/1:33:61:0.069:2
chr9	42719976	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:28:47:0.085:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:31:60:0.067:2
chr9	42719981	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,3:32:30:0.100:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,5:33:56:0.089:2
chr9	42719984	.	T	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,3:32:26:0.115:2	./.	./.	0/1:31,3:32:34:0.088:2	0/1:39,3:32:42:0.071:2	0/1:34,3:32:37:0.081:2	./.
chr9	42720009	.	T	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,3:32:16:0.188:2	./.	./.	./.	0/1:20,4:33:24:0.167:2	./.	0/1:35,4:32:39:0.103:2
chr9	42720012	rs200982178	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,4:31:13:0.308:2	0/1:13,4:31:17:0.235:2	./.	./.	0/1:7,6:32:13:0.462:2	0/1:15,5:31:20:0.250:2	0/1:5,3:32:8:0.375:2	0/1:12,6:29:18:0.333:2	0/1:9,7:33:16:0.438:2	./.	0/1:21,13:32:34:0.382:2
chr9	42720116	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.
chr9	42720332	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:35:2:1.00:2	./.
chr9	43091410	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:34:10:0.300:2	./.	./.	./.
chr9	43091467	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,8:31:17:0.471:2	./.
chr9	43091509	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.
chr9	43091716	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,7:29:22:0.318:2	./.	./.	./.
chr9	43091725	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,3:33:45:0.067:2	./.	./.	./.	./.	./.	./.	./.
chr9	43091789	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,10:33:53:0.189:2	0/1:25,4:32:29:0.138:2	./.	0/1:74,7:33:81:0.086:2	0/1:51,9:32:60:0.150:2	0/1:41,4:32:45:0.089:2	0/1:38,5:33:43:0.116:2	./.	./.	0/1:45,3:34:48:0.063:2	0/1:55,7:33:62:0.113:2
chr9	43092252	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	0/1:0,2:35:2:1.00:2
chr9	43092253	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	0/1:0,2:34:2:1.00:2
chr9	43133276	rs200706370	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,4:30:28:0.143:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	43133298	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:49,7:32:56:0.125:2	./.	./.	./.	./.	./.	./.	0/1:40,4:32:44:0.091:2	./.	./.	0/1:41,5:32:46:0.109:2
chr9	43624850	rs201333660	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:11,4:30:15:0.267:2	0/1:13,3:33:16:0.188:2	./.	./.	./.	./.	0/1:10,3:33:13:0.231:2	./.	0/1:18,4:32:22:0.182:2	./.	0/1:11,4:33:15:0.267:2
chr9	43625066	rs200378007	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:67,52:33:119:0.437:2	0/1:49,33:32:82:0.402:2	./.	./.	./.	./.	./.	./.	./.	0/1:60,47:33:107:0.439:2	./.
chr9	43625257	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:32:171:0.023:2	./.	./.	./.
chr9	43625266	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,5:32:108:0.046:2	./.	./.	0/1:163,6:33:169:0.036:2	./.	./.	./.
chr9	43625271	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:32:162:0.025:2	./.	./.	./.
chr9	43625382	rs143826416	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:59,46:32:105:0.438:2	0/1:30,20:32:50:0.400:2	0/1:2,14:31:16:0.875:2	./.	./.	./.	0/1:40,27:32:67:0.403:2	./.	0/1:39,35:33:74:0.473:2	0/1:43,46:33:89:0.517:2	./.
chr9	43625611	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,4:32:23:0.174:2	./.	0/1:20,3:33:23:0.130:2	./.
chr9	43625791	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:13,5:32:18:0.278:2	0/1:11,4:29:15:0.267:2	./.	0/1:15,8:29:23:0.348:2	./.	0/1:12,4:30:16:0.250:2	./.	0/1:20,3:31:23:0.130:2	0/1:11,5:31:16:0.313:2	./.	0/1:17,4:31:21:0.190:2
chr9	43625849	.	C	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,3:31:11:0.273:2	0/1:5,3:31:8:0.375:2	./.	0/1:5,4:33:9:0.444:2	0/1:10,3:31:13:0.231:2	0/1:14,3:34:17:0.176:2	./.	./.	0/1:12,6:31:18:0.333:2	./.	./.
chr9	43626059	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.
chr9	43626110	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.
chr9	43626820	rs138779714	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,8:33:16:0.500:2	./.	./.	./.	0/1:6,3:32:9:0.333:2	0/1:7,10:33:17:0.588:2	0/1:9,4:33:13:0.308:2	0/1:6,6:33:12:0.500:2
chr9	43628184	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,3:32:32:0.094:2	./.
chr9	43628255	rs199903287	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,65:32:90:0.722:2	0/1:39,33:31:72:0.458:2	./.	./.	0/1:102,39:32:142:0.277:2	0/1:34,58:33:92:0.630:2	0/1:29,36:32:65:0.554:2	0/1:83,38:32:121:0.314:2
chr9	43628270	.	A	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,14:30:101:0.139:2	./.	0/1:89,13:32:102:0.127:2	0/1:99,6:32:105:0.057:2	0/1:175,7:32:182:0.038:2	0/1:89,18:33:107:0.168:2	0/1:94,12:33:106:0.113:2	./.
chr9	43685260	.	G	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:98,16:31:115:0.140:2	0/1:67,27:32:94:0.287:2	0/1:18,4:31:22:0.182:2	0/1:71,40:30:111:0.360:2	0/1:46,23:30:69:0.333:2	0/1:50,43:31:93:0.462:2	0/1:61,16:30:77:0.208:2	0/1:99,55:29:154:0.357:2	0/1:38,35:31:73:0.479:2	0/1:82,26:29:108:0.241:2	0/1:42,17:30:59:0.288:2
chr9	43685298	rs74568672	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:57,40:31:97:0.412:2	0/1:51,22:32:73:0.301:2	0/1:5,12:32:17:0.706:2	./.	./.	./.	0/1:52,24:32:76:0.316:2	./.	./.	0/1:59,35:32:94:0.372:2	./.
chr9	43685357	rs372133350	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,15:30:41:0.366:2	0/1:15,17:30:32:0.531:2	./.	./.	0/1:32,8:29:40:0.200:2	0/1:15,13:31:28:0.464:2	0/1:32,13:30:45:0.289:2	0/1:16,13:29:29:0.448:2
chr9	43709661	rs201831014	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:107,7:28:114:0.061:2	0/1:63,7:33:70:0.100:2	0/1:0,2:28:2:1.00:2	./.	0/1:109,4:30:113:0.035:2	./.	./.	./.	./.	0/1:125,5:30:130:0.038:2	./.
chr9	43709677	rs189379164	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,5:31:160:0.031:2	./.	./.	0/1:136,5:32:141:0.035:2	./.	./.
chr9	43709726	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,11:31:195:0.056:2	0/1:142,11:32:153:0.072:2	./.	0/1:179,17:31:196:0.087:2	./.	./.	./.	./.
chr9	43737458	rs200069715	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,72:32:167:0.431:2	./.	./.	./.	./.	./.	./.	./.
chr9	43800989	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,50:31:194:0.258:2	0/1:155,42:31:197:0.213:2	0/1:150,45:31:195:0.231:2	./.	./.	0/1:139,57:32:196:0.291:2	./.	./.
chr9	43816656	rs199925161	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,191:32:191:1.00:2	0/1:0,189:31:189:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,192:32:192:1.00:2	0/1:0,184:31:184:1.00:2	0/1:1,197:31:198:0.995:2	0/1:2,194:31:196:0.990:2	0/1:2,193:32:195:0.990:2	0/1:0,192:32:192:1.00:2	0/1:0,190:32:190:1.00:2	0/1:94,98:32:193:0.510:2
chr9	43816717	rs201844561	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:106,8:31:114:0.070:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	43816734	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,64:32:195:0.328:2	./.	./.	./.	./.	./.
chr9	43816735	rs200986004	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:120,10:32:130:0.077:2	./.	./.	./.	0/1:175,21:32:196:0.107:2	./.	./.	./.	./.
chr9	43818057	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,76:32:78:0.974:2	./.	./.	./.	./.	./.	./.	./.
chr9	43818062	rs78142446	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:98,72:31:170:0.424:2	0/1:59,62:31:121:0.512:2	0/1:0,18:29:18:1.00:2	0/1:0,79:31:79:1.00:2	0/1:1,47:31:48:0.979:2	./.	0/1:72,53:31:125:0.424:2	0/1:96,57:30:153:0.373:2	0/1:5,83:32:88:0.943:2	0/1:0,167:31:167:1.00:2	0/1:97,89:31:186:0.478:2
chr9	43822668	rs143137380	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:144,49:31:193:0.254:2	0/1:143,52:32:195:0.267:2	0/1:20,32:31:52:0.615:2	./.	./.	./.	0/1:132,62:31:194:0.320:2	./.	./.	0/1:133,64:31:197:0.325:2	./.
chr9	43822686	rs200662463	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:123,61:32:184:0.332:2	0/1:126,72:32:198:0.364:2	0/1:47,15:31:62:0.242:2	./.	./.	0/1:128,59:31:187:0.316:2	0/1:142,51:32:193:0.264:2	0/1:154,36:32:190:0.189:2	./.	0/1:167,31:32:198:0.157:2	0/1:118,68:32:186:0.366:2
chr9	43822704	rs201563712	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:126,62:32:188:0.330:2	0/1:128,68:32:196:0.347:2	0/1:40,16:29:56:0.286:2	./.	./.	0/1:139,52:31:192:0.272:2	0/1:140,57:32:197:0.289:2	0/1:165,29:32:194:0.149:2	./.	0/1:166,29:32:195:0.149:2	0/1:100,76:33:176:0.432:2
chr9	43822749	rs200531555	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,12:30:42:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	43822762	rs200440031	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:126,65:31:192:0.340:2	0/1:93,58:31:151:0.384:2	0/1:26,9:30:35:0.257:2	./.	./.	0/1:136,28:30:164:0.171:2	0/1:111,68:31:179:0.380:2	0/1:158,31:30:190:0.164:2	./.	0/1:158,25:30:183:0.137:2	0/1:112,79:31:191:0.414:2
chr9	43828112	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	0/1:191,4:33:195:0.021:2	./.	./.
chr9	43844153	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:25,3:31:28:0.107:2	0/1:141,25:31:166:0.151:2	0/1:155,7:30:162:0.043:2	./.	./.	./.	0/1:174,8:32:182:0.044:2	0/1:130,7:31:137:0.051:2	./.
chr9	43844193	rs199599712	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:134,56:30:191:0.295:2	0/1:114,53:32:167:0.317:2	0/1:31,8:31:39:0.205:2	0/1:187,12:30:199:0.060:2	./.	0/1:173,26:30:199:0.131:2	0/1:159,38:30:197:0.193:2	0/1:164,31:31:195:0.159:2	./.	0/1:153,43:31:196:0.219:2	0/1:140,51:30:191:0.267:2
chr9	43844263	rs200600495	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:146,41:30:187:0.219:2	0/1:135,36:30:171:0.211:2	0/1:45,9:31:54:0.167:2	0/1:167,11:28:178:0.062:2	./.	0/1:174,17:32:191:0.089:2	0/1:133,37:30:170:0.218:2	0/1:162,34:31:197:0.173:2	./.	0/1:144,31:30:175:0.177:2	0/1:131,55:31:186:0.296:2
chr9	43849812	rs141780724	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:137,42:30:179:0.235:2	0/1:138,46:30:184:0.250:2	0/1:38,16:30:54:0.296:2	./.	./.	0/1:162,21:31:183:0.115:2	0/1:143,32:29:175:0.183:2	0/1:167,16:31:183:0.087:2	./.	0/1:169,18:30:187:0.096:2	0/1:131,34:30:165:0.206:2
chr9	43849817	rs4063192	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,80:32:171:0.468:2	0/1:101,83:32:184:0.451:2	0/1:17,32:31:49:0.653:2	0/1:123,67:32:191:0.353:2	0/1:127,64:32:191:0.335:2	0/1:131,51:31:182:0.280:2	0/1:118,58:32:176:0.330:2	0/1:151,34:32:185:0.184:2	0/1:128,61:33:189:0.323:2	0/1:105,79:32:184:0.429:2	0/1:133,33:31:166:0.199:2
chr9	43853495	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,25:26:134:0.187:2	./.	./.	./.	./.	./.	./.
chr9	43853533	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,6:33:184:0.033:2	0/1:169,6:32:175:0.034:2	./.
chr9	43853546	rs200740249	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:39,10:30:50:0.204:2	0/1:148,37:30:185:0.200:2	0/1:158,25:32:184:0.137:2	./.	./.	./.	0/1:158,28:31:186:0.151:2	./.	./.
chr9	43876038	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:185,9:33:194:0.046:2	0/1:188,8:32:196:0.041:2	0/1:86,7:32:93:0.075:2	0/1:162,28:32:190:0.147:2	0/1:167,29:32:196:0.148:2	0/1:194,5:32:199:0.025:2	0/1:186,11:32:197:0.056:2	./.	0/1:166,26:32:192:0.135:2	0/1:187,7:33:194:0.036:2	./.
chr9	43876040	rs200325053	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:135,58:30:193:0.301:2	0/1:144,51:30:195:0.262:2	0/1:43,43:30:86:0.500:2	0/1:159,30:29:189:0.159:2	0/1:163,30:29:193:0.155:2	0/1:174,24:30:198:0.121:2	0/1:119,68:30:187:0.364:2	0/1:191,5:29:198:0.026:2	0/1:164,27:30:192:0.141:2	0/1:115,76:31:191:0.398:2	0/1:180,11:32:193:0.058:2
chr9	43876049	.	G	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:179,9:31:188:0.048:2	0/1:180,8:31:188:0.043:2	./.	./.	./.	0/1:193,5:31:198:0.025:2	./.	./.	0/1:168,7:32:175:0.040:2	0/1:180,7:28:187:0.037:2	./.
chr9	43876136	rs376052271	A	G,T	.	PASS	AC=3,1;AF=0.250,0.083;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9-variant11	GT:BQ:DP:FA:SS	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	0/1:33:3:0.667:2	./.	0/2:32:2:1.00:2	./.	./.	./.	./.	0/1:35:2:1.00:2	0/1:34:2:1.00:2	./.
chr9	43885033	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:32:162:0.025:2	./.	./.	./.	./.	./.
chr9	43890322	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:160,38:30:198:0.192:2	./.	./.	./.	./.	./.	./.	./.
chr9	43890411	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:120,12:26:132:0.091:2	./.	0/1:126,7:25:133:0.053:2	0/1:113,5:27:118:0.042:2	0/1:177,6:26:183:0.033:2	./.	./.	./.
chr9	43890444	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,6:30:144:0.042:2	./.	./.	./.
chr9	43891588	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:160,35:31:195:0.179:2	0/1:155,42:31:197:0.213:2	0/1:72,13:31:85:0.153:2	0/1:167,28:31:195:0.144:2	0/1:151,40:31:192:0.209:2	0/1:171,25:30:196:0.128:2	0/1:161,38:31:199:0.191:2	0/1:166,29:31:195:0.149:2	./.	0/1:172,17:32:189:0.090:2	0/1:173,15:30:188:0.080:2
chr9	43891639	rs200586830	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:180,14:31:194:0.072:2	0/1:178,19:30:197:0.096:2	./.	./.	0/1:169,24:30:193:0.124:2	0/1:175,22:32:197:0.112:2	0/1:174,20:31:194:0.103:2	0/1:155,32:31:187:0.171:2
chr9	43891663	rs202175921	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:171,24:33:195:0.123:2	0/1:175,21:32:196:0.107:2	0/1:73,20:32:93:0.215:2	./.	./.	./.	0/1:179,20:32:199:0.101:2	./.	./.	0/1:167,20:32:187:0.107:2	./.
chr9	43891675	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:136,51:31:187:0.273:2	0/1:135,60:31:195:0.308:2	0/1:74,15:31:89:0.169:2	./.	./.	0/1:156,24:30:180:0.133:2	0/1:170,26:30:196:0.133:2	./.	./.	0/1:173,20:30:193:0.104:2	0/1:173,21:31:194:0.108:2
chr9	43894176	rs201790539	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,4:32:23:0.174:2	0/1:133,14:31:147:0.095:2	0/1:138,18:29:156:0.115:2	0/1:104,25:30:129:0.194:2	./.	./.	0/1:136,40:32:176:0.227:2	./.	./.
chr9	43908492	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:173,25:32:198:0.126:2	./.	0/1:168,31:33:199:0.156:2	./.	./.	./.	0/1:158,42:33:200:0.210:2
chr9	43915893	rs200215881	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,5:36:134:0.037:2	0/1:107,4:33:111:0.036:2	./.	./.	./.	./.	./.	./.	0/1:186,5:33:191:0.026:2	0/1:85,4:34:89:0.045:2	./.
chr9	44869077	rs10124432	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,9:31:20:0.450:2	0/1:10,7:32:17:0.412:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	44869141	rs10120065	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:8,6:32:14:0.429:2	0/1:8,5:34:13:0.385:2	./.	./.	./.	./.	0/1:4,11:33:15:0.733:2	./.	./.	./.	./.
chr9	44991094	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:128,6:30:134:0.045:2	./.	./.	./.	0/1:154,5:32:159:0.031:2	./.	./.	./.
chr9	44991095	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,6:30:135:0.044:2	./.	./.	./.	0/1:154,5:33:160:0.031:2	./.	./.	./.
chr9	44991110	.	A	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:140,7:32:147:0.048:2	./.	0/1:48,3:34:51:0.059:2	0/1:128,19:32:147:0.129:2	0/1:149,9:30:158:0.057:2	0/1:161,5:32:166:0.030:2	./.	0/1:152,15:33:167:0.090:2	0/1:148,9:34:157:0.057:2	0/1:154,5:31:159:0.031:2	0/1:132,8:30:140:0.057:2
chr9	44991152	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:132,36:29:168:0.214:2	0/1:143,17:31:160:0.106:2	0/1:51,13:31:64:0.203:2	0/1:127,35:31:162:0.216:2	0/1:143,22:32:166:0.133:2	0/1:158,19:31:178:0.107:2	0/1:151,13:31:164:0.079:2	0/1:136,35:31:171:0.205:2	0/1:144,19:31:163:0.117:2	0/1:144,18:31:162:0.111:2	0/1:105,42:31:147:0.286:2
chr9	44991163	.	C	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:140,28:31:168:0.167:2	0/1:128,26:32:154:0.169:2	0/1:46,12:31:59:0.207:2	0/1:132,27:31:159:0.170:2	0/1:129,33:31:162:0.204:2	0/1:152,28:31:180:0.156:2	0/1:128,31:32:159:0.195:2	0/1:159,13:31:172:0.076:2	0/1:119,33:31:153:0.217:2	0/1:141,22:32:163:0.135:2	0/1:127,28:29:155:0.181:2
chr9	44991170	.	G	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:136,27:32:163:0.166:2	0/1:121,27:33:148:0.182:2	0/1:48,12:32:60:0.200:2	0/1:128,22:33:150:0.147:2	0/1:126,29:33:155:0.187:2	0/1:149,31:32:180:0.172:2	0/1:115,31:33:146:0.212:2	0/1:168,13:32:181:0.072:2	0/1:115,34:32:150:0.228:2	0/1:140,23:32:163:0.141:2	0/1:135,23:30:158:0.146:2
chr9	44991181	.	C	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:125,37:29:162:0.228:2	0/1:119,22:30:141:0.156:2	0/1:42,14:30:56:0.250:2	0/1:115,41:29:156:0.263:2	0/1:111,30:29:141:0.213:2	0/1:155,21:30:176:0.119:2	0/1:120,18:30:138:0.130:2	0/1:142,40:30:182:0.220:2	0/1:130,25:31:155:0.161:2	0/1:140,24:30:164:0.146:2	0/1:104,53:30:157:0.338:2
chr9	45727901	.	A	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:148,7:29:155:0.045:2	0/1:151,9:31:160:0.056:2	0/1:21,3:30:25:0.125:2	0/1:139,20:32:159:0.126:2	0/1:137,6:31:143:0.042:2	./.	0/1:172,5:35:177:0.028:2	0/1:158,11:33:169:0.065:2	0/1:138,8:35:147:0.055:2	0/1:150,11:29:161:0.068:2	0/1:130,8:29:138:0.058:2
chr9	45727943	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:139,26:30:165:0.158:2	0/1:147,24:32:171:0.140:2	0/1:39,6:30:45:0.133:2	0/1:127,38:31:165:0.230:2	0/1:129,16:31:146:0.110:2	0/1:152,21:31:173:0.121:2	0/1:163,13:31:176:0.074:2	0/1:151,25:30:176:0.142:2	0/1:138,20:31:158:0.127:2	0/1:138,21:30:159:0.132:2	0/1:116,29:32:146:0.200:2
chr9	45727952	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:33:180:0.022:2	./.	./.	./.	./.	./.
chr9	45727954	rs200321883	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:137,30:31:167:0.180:2	0/1:150,22:32:172:0.128:2	0/1:31,11:32:42:0.262:2	0/1:149,25:32:174:0.144:2	0/1:119,27:32:146:0.185:2	0/1:156,24:32:180:0.133:2	0/1:147,22:32:169:0.130:2	0/1:147,31:32:178:0.174:2	0/1:122,26:33:149:0.176:2	0/1:126,30:32:156:0.192:2	0/1:137,16:32:153:0.105:2
chr9	45727961	rs200792266	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:140,29:31:169:0.172:2	0/1:143,19:32:162:0.117:2	0/1:29,12:33:41:0.293:2	0/1:148,25:33:173:0.145:2	0/1:121,28:32:149:0.188:2	0/1:156,22:31:178:0.124:2	0/1:138,21:33:159:0.132:2	0/1:148,31:33:179:0.173:2	0/1:119,22:33:141:0.156:2	0/1:126,32:32:158:0.203:2	0/1:138,18:31:156:0.115:2
chr9	45727972	.	C	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:142,30:30:172:0.174:2	0/1:123,28:31:151:0.185:2	0/1:35,5:30:40:0.125:2	0/1:129,47:30:176:0.267:2	0/1:118,20:29:138:0.145:2	0/1:152,24:30:176:0.136:2	0/1:125,19:29:144:0.132:2	0/1:150,28:30:178:0.157:2	0/1:117,26:29:143:0.182:2	0/1:137,24:31:161:0.149:2	0/1:116,42:30:158:0.266:2
chr9	45733631	rs372398628	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:185,10:32:195:0.051:2	./.	0/1:165,11:32:176:0.063:2	0/1:173,6:31:179:0.034:2	0/1:187,8:32:195:0.041:2	./.	0/1:185,11:30:196:0.056:2	0/1:184,5:32:189:0.026:2	./.	0/1:187,5:31:192:0.026:2
chr9	45733666	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:177,11:32:188:0.059:2	./.	./.	./.	./.	./.	./.	./.
chr9	45733677	.	A	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:192,5:32:197:0.025:2	0/1:135,6:33:141:0.043:2	0/1:184,8:31:192:0.042:2	0/1:187,4:33:191:0.021:2	0/1:191,5:33:196:0.026:2	./.	0/1:188,9:32:197:0.046:2	0/1:185,5:30:190:0.026:2	0/1:189,4:32:193:0.021:2	0/1:174,5:31:179:0.028:2
chr9	45733681	rs146523101	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:84,101:32:185:0.546:2	0/1:98,99:32:197:0.503:2	0/1:93,55:31:148:0.372:2	./.	./.	0/1:156,36:30:193:0.188:2	0/1:150,40:31:190:0.211:2	0/1:85,110:31:195:0.564:2	./.	0/1:144,49:31:193:0.254:2	0/1:84,97:31:181:0.536:2
chr9	45733685	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:190,5:31:195:0.026:2	0/1:155,6:30:161:0.037:2	0/1:184,7:30:191:0.037:2	./.	./.	./.	0/1:183,8:31:191:0.042:2	./.	./.	0/1:182,5:29:187:0.027:2
chr9	45733796	rs150431769	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,98:26:101:0.980:2	0/1:1,121:25:123:0.992:2	./.	./.	./.	0/1:121,36:27:157:0.229:2	./.	./.
chr9	45733847	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,3:31:34:0.088:2	./.	./.	./.	./.	./.	./.
chr9	45734190	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,4:24:22:0.182:2	0/1:33,5:31:38:0.132:2	./.	./.	./.	./.	0/1:71,4:33:75:0.053:2	./.
chr9	45734227	rs202126047	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:66,4:31:70:0.057:2	./.	0/1:5,10:31:15:0.667:2	0/1:18,13:33:31:0.419:2	0/1:107,9:32:116:0.078:2	./.	./.	0/1:69,4:33:73:0.055:2	0/1:48,5:33:53:0.094:2	0/1:54,6:34:60:0.100:2
chr9	45734327	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	0/1:115,4:35:119:0.034:2	./.	./.	./.	./.	./.
chr9	45734505	.	A	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:169,13:33:182:0.071:2	0/1:128,13:31:141:0.092:2	0/1:39,3:32:42:0.071:2	./.	./.	./.	0/1:181,16:32:197:0.081:2	0/1:166,13:31:179:0.073:2	./.	./.	0/1:175,20:33:195:0.103:2
chr9	45734516	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,8:30:183:0.044:2	./.	./.	./.	./.
chr9	45734668	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,4:32:19:0.211:2	0/1:6,4:31:10:0.400:2	./.	./.	./.	./.	./.	./.
chr9	45734671	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:24,5:32:29:0.172:2	0/1:9,3:33:12:0.250:2	./.	./.	./.	./.	0/1:25,3:32:28:0.107:2	0/1:21,4:32:25:0.160:2	./.	./.	0/1:12,8:32:20:0.400:2
chr9	45734702	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,3:31:18:0.167:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	45734744	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	46386633	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,7:33:44:0.159:2	0/1:35,3:32:38:0.079:2	./.	./.	./.
chr9	46386657	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:44,5:33:49:0.102:2	./.	./.	./.	./.	./.	0/1:45,17:32:62:0.274:2	0/1:51,5:32:56:0.089:2	./.	./.	./.
chr9	46386688	rs370666051	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,54:31:64:0.844:2	0/1:13,43:31:56:0.768:2	0/1:4,13:31:17:0.765:2	0/1:81,46:30:127:0.362:2	0/1:67,35:30:102:0.343:2	0/1:14,41:29:55:0.745:2	0/1:55,72:31:127:0.567:2	0/1:39,64:30:103:0.621:2	0/1:49,48:31:97:0.495:2	0/1:38,45:31:83:0.542:2	0/1:41,44:30:85:0.518:2
chr9	46386692	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,4:31:104:0.038:2	./.	./.	./.	./.	./.	./.
chr9	46386695	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,4:30:109:0.037:2	./.	./.	./.	./.	./.	./.
chr9	46386713	rs374226215	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:167,4:32:171:0.023:2	./.	./.	./.	./.	./.	./.
chr9	46386740	rs374969031	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:122,70:32:192:0.365:2	0/1:75,53:31:128:0.414:2	0/1:25,21:31:46:0.457:2	0/1:137,52:32:190:0.275:2	0/1:152,35:31:187:0.187:2	0/1:114,76:31:190:0.400:2	0/1:125,64:32:189:0.339:2	0/1:102,86:32:188:0.457:2	0/1:121,71:32:192:0.370:2	0/1:122,64:31:186:0.344:2	0/1:134,54:32:188:0.287:2
chr9	46386791	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:174,4:33:178:0.022:2	0/1:175,6:33:181:0.033:2	./.	./.	./.	0/1:183,4:32:188:0.021:2	./.	./.	./.	./.	./.
chr9	46386806	rs371471403	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:113,65:33:178:0.365:2	0/1:106,70:32:176:0.398:2	0/1:82,23:32:105:0.219:2	0/1:148,46:32:194:0.237:2	0/1:146,44:33:190:0.232:2	0/1:117,68:33:185:0.368:2	0/1:154,40:33:194:0.206:2	0/1:130,66:33:196:0.337:2	0/1:137,55:34:192:0.286:2	0/1:130,56:33:186:0.301:2	0/1:129,54:33:183:0.295:2
chr9	46386846	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:161,16:31:178:0.090:2	0/1:168,16:30:184:0.087:2	0/1:114,12:30:126:0.095:2	0/1:174,16:28:190:0.084:2	0/1:178,13:31:191:0.068:2	0/1:172,14:31:187:0.075:2	./.	./.	0/1:181,6:30:187:0.032:2	0/1:176,13:31:189:0.069:2	0/1:167,8:32:175:0.046:2
chr9	46386867	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,15:30:175:0.086:2	./.	./.	./.
chr9	46386897	.	C	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:162,13:31:175:0.074:2	0/1:169,7:32:176:0.040:2	0/1:87,13:32:100:0.130:2	./.	./.	./.	0/1:153,9:32:162:0.056:2	0/1:166,9:32:175:0.051:2	./.	./.	0/1:167,6:33:173:0.035:2
chr9	46386902	rs201226291	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:96,71:30:167:0.425:2	0/1:83,81:30:164:0.494:2	0/1:63,32:30:95:0.337:2	0/1:147,49:30:196:0.250:2	0/1:139,57:29:196:0.291:2	0/1:99,68:29:167:0.407:2	0/1:106,55:30:161:0.342:2	0/1:124,55:30:179:0.307:2	0/1:125,46:30:171:0.269:2	0/1:124,58:29:182:0.319:2	0/1:109,65:30:174:0.374:2
chr9	46386906	.	A	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:154,8:32:162:0.049:2	0/1:158,5:32:163:0.031:2	./.	./.	./.	0/1:157,4:31:161:0.025:2	0/1:156,5:30:161:0.031:2	0/1:163,13:28:176:0.074:2	./.	0/1:173,4:32:177:0.023:2	./.
chr9	46386910	rs199721242	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:90,62:32:152:0.408:2	0/1:81,79:32:160:0.494:2	0/1:59,31:33:90:0.344:2	0/1:147,43:33:190:0.226:2	0/1:138,52:31:191:0.274:2	0/1:86,56:32:142:0.394:2	0/1:104,54:32:158:0.342:2	0/1:120,54:32:174:0.310:2	0/1:123,44:32:167:0.263:2	0/1:122,55:32:177:0.311:2	0/1:99,56:31:155:0.361:2
chr9	46386915	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:136,5:30:141:0.035:2	./.	0/1:72,7:31:79:0.089:2	./.	./.	./.	0/1:152,5:30:157:0.032:2	0/1:165,6:30:171:0.035:2	./.	./.	./.
chr9	46386921	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:165,16:30:181:0.088:2	./.	./.	./.	./.	./.	./.	./.
chr9	46386956	rs200544395	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,28:31:73:0.389:2	0/1:36,34:31:70:0.486:2	0/1:23,12:33:35:0.343:2	0/1:139,25:32:165:0.152:2	0/1:120,25:30:145:0.172:2	0/1:46,25:30:71:0.352:2	0/1:63,33:30:96:0.344:2	0/1:88,36:31:125:0.290:2	0/1:132,24:30:157:0.154:2	0/1:82,20:31:102:0.196:2	0/1:87,25:31:113:0.223:2
chr9	46386994	rs144952187	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,9:27:9:1.00:2	0/1:2,5:31:7:0.714:2	0/1:8,4:30:12:0.333:2	0/1:112,14:27:126:0.111:2	0/1:71,10:28:81:0.123:2	0/1:4,19:28:23:0.826:2	0/1:6,17:26:23:0.739:2	0/1:38,28:29:66:0.424:2	0/1:97,19:30:116:0.164:2	0/1:44,12:30:56:0.214:2	0/1:54,30:29:84:0.357:2
chr9	46386995	rs199845075	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,9:28:9:1.00:2	0/1:2,5:31:7:0.714:2	0/1:8,4:31:12:0.333:2	0/1:113,14:28:127:0.110:2	0/1:70,10:28:80:0.125:2	0/1:4,19:29:23:0.826:2	0/1:3,19:27:22:0.864:2	0/1:38,28:29:66:0.424:2	0/1:97,20:28:117:0.171:2	0/1:43,12:31:55:0.218:2	0/1:52,31:30:83:0.373:2
chr9	46387008	rs200904791	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,10:33:10:1.00:2	0/1:2,5:32:7:0.714:2	0/1:6,3:33:9:0.333:2	0/1:104,15:34:120:0.126:2	0/1:65,12:29:77:0.156:2	0/1:1,23:31:24:0.958:2	0/1:15,4:32:19:0.211:2	0/1:31,30:33:61:0.492:2	0/1:90,15:33:106:0.143:2	0/1:39,13:32:52:0.250:2	0/1:43,30:31:73:0.411:2
chr9	46387010	rs201280073	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,9:28:16:0.600:2	./.	./.	./.	./.
chr9	46390311	.	G	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,12:29:16:0.750:2	0/1:0,12:31:12:1.00:2	./.	0/1:32,21:30:53:0.396:2	0/1:41,16:31:57:0.281:2	0/1:3,18:31:21:0.857:2	0/1:29,23:31:52:0.442:2	0/1:36,21:30:57:0.368:2	0/1:47,21:32:68:0.309:2	0/1:22,16:32:38:0.421:2	0/1:18,17:31:35:0.486:2
chr9	46390350	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,33:29:47:0.702:2	0/1:4,23:29:27:0.852:2	0/1:5,4:29:9:0.444:2	0/1:56,38:28:94:0.404:2	0/1:65,39:29:104:0.375:2	0/1:5,42:29:47:0.894:2	0/1:48,42:29:90:0.467:2	0/1:57,46:29:103:0.447:2	0/1:76,38:30:114:0.333:2	0/1:32,33:30:65:0.508:2	0/1:35,40:30:75:0.533:2
chr9	46390357	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,5:25:94:0.053:2
chr9	46390359	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:33:110:0.036:2	./.	./.	./.	0/1:90,6:30:96:0.063:2
chr9	46390417	.	T	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:71,5:31:76:0.066:2	0/1:52,10:30:62:0.161:2	0/1:20,4:31:24:0.167:2	./.	./.	./.	0/1:152,15:31:167:0.090:2	./.	./.	./.	0/1:143,17:32:161:0.106:2
chr9	46390430	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,54:30:71:0.761:2	0/1:17,44:30:61:0.721:2	0/1:10,17:30:27:0.630:2	0/1:103,74:30:177:0.418:2	0/1:104,80:30:184:0.435:2	0/1:22,92:30:114:0.807:2	0/1:83,74:31:157:0.471:2	0/1:59,91:31:150:0.607:2	0/1:114,67:30:181:0.370:2	0/1:83,90:31:173:0.520:2	0/1:67,87:31:154:0.565:2
chr9	46390447	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:70,4:29:74:0.054:2	0/1:56,11:32:67:0.164:2	0/1:26,4:33:30:0.133:2	./.	./.	./.	0/1:158,11:32:169:0.065:2	./.	./.	./.	0/1:136,12:31:148:0.081:2
chr9	46390448	.	G	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:56,11:31:67:0.164:2	0/1:26,4:32:30:0.133:2	./.	./.	./.	0/1:158,11:30:169:0.065:2	./.	./.	./.	0/1:134,12:30:146:0.082:2
chr9	46390489	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,5:27:114:0.044:2
chr9	46390495	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,6:27:104:0.058:2
chr9	46390533	.	A	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,8:33:9:0.889:2	0/1:3,11:31:14:0.786:2	./.	0/1:112,10:31:122:0.082:2	0/1:94,12:33:107:0.113:2	0/1:3,17:34:20:0.850:2	0/1:70,20:31:90:0.222:2	0/1:50,19:32:69:0.275:2	0/1:107,9:32:116:0.078:2	0/1:34,9:34:43:0.209:2	0/1:46,14:27:60:0.233:2
chr9	46390552	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:30:36:0.111:2	./.	./.	./.
chr9	46390577	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,3:33:38:0.079:2	./.	./.	./.	./.	./.	./.
chr9	46390587	.	G	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	0/1:1,5:31:6:0.833:2	./.	0/1:15,3:33:18:0.167:2	./.	0/1:6,5:27:11:0.455:2	./.
chr9	46390602	rs140293803	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,3:26:3:1.00:2	./.	./.	0/1:21,4:29:25:0.160:2	./.	0/1:0,5:25:5:1.00:2	./.	0/1:7,3:27:10:0.300:2	./.	0/1:2,4:28:6:0.667:2	./.
chr9	46390627	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:34:7:0.429:2	./.	./.
chr9	46390648	rs371898791	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	0/1:2,3:31:5:0.600:2
chr9	46390898	rs377538973	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	46390924	rs374993202	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	46390949	rs370690358	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.
chr9	46687658	.	G	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:127,11:32:138:0.080:2	0/1:110,18:32:128:0.141:2	0/1:37,4:30:41:0.098:2	0/1:72,30:32:102:0.294:2	0/1:113,40:32:153:0.261:2	./.	./.	0/1:81,39:32:120:0.325:2	./.	0/1:75,43:32:118:0.364:2	0/1:102,33:32:135:0.244:2
chr9	46687679	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,4:30:87:0.046:2	./.	./.	./.	./.	./.	./.	./.
chr9	46687740	.	T	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,16:32:28:0.571:2	0/1:6,10:32:16:0.625:2	0/1:3,2:34:5:0.400:2	0/1:16,25:32:41:0.610:2	0/1:14,13:32:27:0.481:2	0/1:22,23:30:45:0.511:2	0/1:15,8:32:23:0.348:2	0/1:15,15:31:30:0.500:2	0/1:13,19:32:32:0.594:2	0/1:19,21:32:40:0.525:2	0/1:22,13:31:35:0.371:2
chr9	46687845	.	G	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,5:30:14:0.357:2	0/1:6,6:32:12:0.500:2	./.	./.	0/1:9,3:31:12:0.250:2	0/1:7,7:32:14:0.500:2	./.	./.	0/1:9,5:33:14:0.357:2	./.	./.
chr9	46687867	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,3:31:11:0.273:2	0/1:4,4:31:8:0.500:2	./.	0/1:3,5:32:8:0.625:2	0/1:14,6:30:20:0.300:2	0/1:5,3:31:8:0.375:2	0/1:7,4:31:11:0.364:2	0/1:10,3:31:13:0.231:2	0/1:13,3:30:16:0.188:2	0/1:13,3:30:16:0.188:2	0/1:5,3:30:8:0.375:2
chr9	46688016	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:35:6:0.500:2	./.	./.
chr9	46688032	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,4:27:9:0.444:2	./.	./.	./.
chr9	47311440	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:174,22:31:196:0.112:2	./.	0/1:178,21:33:199:0.106:2	./.	./.	./.	0/1:162,29:32:191:0.152:2
chr9	47312377	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,17:34:142:0.120:2
chr9	47312410	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,11:33:170:0.065:2
chr9	65503676	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,4:34:14:0.286:2	./.	./.	./.	./.	./.
chr9	65503786	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,4:30:21:0.190:2	./.	./.	./.	./.	./.
chr9	65503856	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,6:32:36:0.167:2	./.
chr9	65504105	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,34:33:176:0.193:2	0/1:119,32:32:151:0.212:2
chr9	65504118	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,44:32:147:0.299:2	./.	0/1:120,36:33:156:0.231:2	./.
chr9	65504269	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:58,15:31:73:0.205:2	0/1:36,4:31:40:0.100:2	0/1:2,3:31:5:0.600:2	./.	0/1:25,12:29:37:0.324:2	0/1:46,11:31:57:0.193:2	0/1:17,7:29:24:0.292:2	./.	./.	./.	./.
chr9	65504652	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,4:33:15:0.267:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	65506092	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,3:32:12:0.250:2	./.	./.	./.
chr9	65506118	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.
chr9	65506623	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.	./.	./.	./.
chr9	65506872	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,15:33:37:0.405:2	0/1:9,3:31:12:0.250:2	./.	0/1:10,19:32:29:0.655:2	0/1:7,19:31:26:0.731:2	0/1:27,24:31:51:0.471:2	./.	0/1:3,31:31:34:0.912:2	./.	0/1:6,22:31:28:0.786:2	0/1:4,13:32:17:0.765:2
chr9	65506953	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,7:32:25:0.280:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	66553445	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,2:36:6:0.333:2
chr9	66553457	rs201494396	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,15:30:21:0.714:2	./.	./.	./.	./.	./.	./.	./.
chr9	66553463	rs199818526	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,13:28:20:0.650:2	./.	./.	./.	./.	./.	./.	./.
chr9	66553512	rs7018543	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,3:33:19:0.158:2	0/1:2,3:33:5:0.600:2	0/1:2,4:32:6:0.667:2	./.	./.	0/1:0,5:32:5:1.00:2	./.	./.
chr9	66553697	rs4266758	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,3:32:3:1.00:2	0/1:3,4:32:7:0.571:2	./.	0/1:1,9:34:10:0.900:2	0/1:0,2:33:2:1.00:2	0/1:2,4:33:6:0.667:2	./.	0/1:4,5:36:9:0.556:2	0/1:0,11:34:11:1.00:2	0/1:1,5:33:6:0.833:2	0/1:135,13:32:149:0.088:2
chr9	66553727	rs184674502	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,16:32:16:1.00:2	0/1:3,9:32:12:0.750:2	./.	0/1:1,24:31:25:0.960:2	0/1:0,18:31:18:1.00:2	0/1:5,21:31:27:0.808:2	0/1:3,17:31:20:0.850:2	0/1:1,21:32:22:0.955:2	0/1:0,42:31:42:1.00:2	0/1:1,17:31:18:0.944:2	0/1:160,25:31:185:0.135:2
chr9	66553728	rs199817412	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,4:32:20:0.200:2	./.	./.	0/1:20,7:30:27:0.259:2	0/1:20,4:31:24:0.167:2	0/1:16,12:31:28:0.429:2	0/1:21,4:32:25:0.160:2	./.	0/1:32,13:29:45:0.289:2	0/1:13,9:31:22:0.409:2	0/1:174,11:31:185:0.059:2
chr9	66553736	rs17852433	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,10:32:24:0.417:2	0/1:13,5:32:18:0.278:2	./.	0/1:26,9:32:35:0.257:2	0/1:13,16:32:29:0.552:2	0/1:25,11:29:36:0.306:2	0/1:18,14:31:32:0.438:2	0/1:27,10:31:37:0.270:2	0/1:41,15:33:56:0.268:2	0/1:24,12:32:36:0.333:2	./.
chr9	66553812	rs201314663	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,7:31:16:0.438:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	67793240	.	G	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:112,43:30:155:0.277:2	0/1:129,51:31:180:0.283:2	0/1:30,12:30:42:0.286:2	0/1:92,75:30:167:0.449:2	0/1:142,42:28:184:0.228:2	0/1:149,31:30:180:0.172:2	0/1:143,32:30:175:0.183:2	0/1:135,40:31:175:0.229:2	0/1:127,35:29:162:0.216:2	0/1:128,45:29:173:0.260:2	0/1:95,53:30:148:0.358:2
chr9	67793251	.	C	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:126,23:33:150:0.154:2	0/1:154,27:32:182:0.149:2	./.	0/1:138,26:32:164:0.159:2	0/1:151,29:32:180:0.161:2	0/1:140,24:33:164:0.146:2	0/1:148,28:31:176:0.159:2	0/1:146,15:33:161:0.093:2	0/1:126,29:33:155:0.187:2	0/1:138,24:33:162:0.148:2	0/1:119,24:32:143:0.168:2
chr9	67793258	.	G	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:127,24:32:151:0.159:2	0/1:152,25:32:177:0.141:2	0/1:40,4:32:44:0.091:2	0/1:135,28:31:163:0.172:2	0/1:152,25:31:177:0.141:2	0/1:136,24:30:160:0.150:2	0/1:146,27:31:173:0.156:2	0/1:140,16:29:156:0.103:2	0/1:129,31:32:160:0.194:2	0/1:136,25:32:161:0.155:2	0/1:118,28:31:146:0.192:2
chr9	67793269	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:119,23:30:142:0.162:2	0/1:126,44:31:170:0.259:2	0/1:36,12:31:48:0.250:2	0/1:97,51:30:149:0.345:2	0/1:134,34:31:169:0.202:2	0/1:130,22:32:152:0.145:2	0/1:148,26:32:174:0.149:2	0/1:131,25:31:156:0.160:2	0/1:130,21:30:151:0.139:2	0/1:124,34:31:159:0.215:2	0/1:103,37:32:140:0.264:2
chr9	67793311	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:141,5:30:146:0.034:2	0/1:104,10:34:114:0.088:2	./.	0/1:116,9:34:125:0.072:2	0/1:99,4:33:103:0.039:2	0/1:147,4:34:151:0.026:2	0/1:115,7:32:122:0.057:2	0/1:137,4:34:141:0.028:2	./.	0/1:114,6:25:120:0.050:2	0/1:131,5:31:136:0.037:2
chr9	67793326	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:32:115:0.035:2	./.
chr9	67793327	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:30:113:0.035:2	./.
chr9	67927007	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,3:32:27:0.111:2	./.	./.	./.	./.	0/1:32,4:29:36:0.111:2	./.	./.	./.	./.	./.
chr9	67930466	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:32:10:0.300:2	./.	./.	0/1:3,3:34:6:0.500:2
chr9	67968354	rs199688120	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,6:32:75:0.080:2	./.	./.	0/1:181,16:31:197:0.081:2	0/1:163,30:32:195:0.155:2	0/1:183,15:32:198:0.076:2	0/1:178,18:32:196:0.092:2	0/1:128,60:32:189:0.319:2	0/1:181,15:31:196:0.077:2
chr9	67968458	rs200972432	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,18:29:116:0.157:2	./.	0/1:103,22:29:125:0.176:2	0/1:59,31:29:91:0.344:2	0/1:90,10:29:100:0.100:2	0/1:100,18:31:118:0.153:2	0/1:41,68:29:109:0.624:2	0/1:111,22:30:133:0.165:2
chr9	67968476	rs201373069	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,58:33:124:0.468:2	0/1:55,48:32:103:0.466:2	0/1:13,5:32:18:0.278:2	0/1:54,45:31:99:0.455:2	0/1:44,38:31:82:0.463:2	0/1:52,38:32:90:0.422:2	0/1:29,43:32:72:0.597:2	0/1:45,36:33:81:0.444:2	0/1:56,44:33:100:0.440:2	0/1:55,34:33:89:0.382:2	0/1:69,57:32:127:0.452:2
chr9	67968540	rs200294490	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,6:31:59:0.102:2	./.	./.	./.	./.	./.	./.	./.
chr9	67968549	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,8:27:44:0.182:2	./.	./.	./.
chr9	67968756	rs200586073	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,4:29:10:0.400:2	./.	./.	0/1:5,3:30:8:0.375:2	./.	./.	./.
chr9	67968798	rs201758821	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:31:11:0.364:2	0/1:6,5:31:11:0.455:2
chr9	67968855	rs199788894	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:32:11:0.273:2	./.	./.	./.	./.	./.	./.	./.
chr9	67984847	rs199579102	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,3:31:20:0.150:2	0/1:17,6:29:23:0.261:2	0/1:25,3:33:28:0.107:2
chr9	67984949	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,3:31:32:0.094:2	./.	./.	./.	./.	./.	./.	./.
chr9	67984952	rs200755615	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,9:31:32:0.281:2	0/1:12,4:32:16:0.250:2	./.	0/1:16,13:30:29:0.448:2	0/1:21,3:30:24:0.125:2	0/1:21,5:32:26:0.192:2	0/1:8,3:32:11:0.273:2	0/1:24,5:31:29:0.172:2	0/1:26,10:31:36:0.278:2	0/1:16,7:28:23:0.304:2	0/1:36,12:32:48:0.250:2
chr9	69200366	.	G	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:68,17:30:85:0.200:2	0/1:42,9:29:51:0.176:2	./.	0/1:78,17:29:95:0.179:2	0/1:105,17:28:123:0.139:2	0/1:65,16:28:81:0.198:2	0/1:111,13:27:125:0.105:2	0/1:107,28:27:135:0.207:2	0/1:69,19:28:88:0.216:2	0/1:57,16:28:73:0.219:2	0/1:24,13:25:37:0.351:2
chr9	69200516	rs200592617	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:139,50:30:189:0.265:2	0/1:141,43:31:184:0.234:2	0/1:131,28:28:159:0.176:2	0/1:147,45:28:192:0.234:2	0/1:165,26:29:191:0.136:2	0/1:151,42:28:193:0.218:2	0/1:168,29:30:197:0.147:2	0/1:167,26:29:193:0.135:2	0/1:155,40:28:195:0.205:2	0/1:145,40:28:185:0.216:2	0/1:112,50:29:162:0.309:2
chr9	69200873	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.
chr9	69201147	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:121,6:28:128:0.047:2	./.	./.	./.	./.	./.	./.	./.
chr9	69201177	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:138,5:29:143:0.035:2	./.	0/1:133,6:25:139:0.043:2	./.	./.	./.	./.
chr9	69201284	.	G	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:118,7:26:125:0.056:2	./.	./.	0/1:109,6:29:115:0.052:2	./.	./.	./.	./.	0/1:92,7:30:99:0.071:2	./.	0/1:80,5:29:85:0.059:2
chr9	69201291	.	T	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:63,48:29:111:0.432:2	0/1:34,32:30:66:0.485:2	./.	0/1:96,14:27:110:0.127:2	0/1:55,37:28:92:0.402:2	0/1:85,22:28:107:0.206:2	0/1:44,34:28:78:0.436:2	0/1:77,34:28:111:0.306:2	0/1:52,42:31:94:0.447:2	0/1:36,26:29:62:0.419:2	0/1:70,11:30:81:0.136:2
chr9	69201362	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,19:28:97:0.196:2	./.	0/1:53,31:29:84:0.369:2	./.	./.	./.
chr9	69201479	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,26:26:150:0.174:2	./.	./.	./.
chr9	69201597	rs199761834	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,6:32:50:0.120:2	./.	./.	./.	./.	./.	./.	./.
chr9	69201606	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,8:32:67:0.119:2	./.	./.	./.
chr9	69201615	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,6:26:57:0.107:2	./.	./.	./.
chr9	69201837	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,3:34:21:0.143:2	./.	./.	./.	./.	./.	./.	./.	0/1:17,3:34:20:0.150:2	./.	./.
chr9	69201942	.	C	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,8:31:44:0.182:2	0/1:69,4:33:73:0.055:2	0/1:42,4:33:46:0.087:2	0/1:48,4:27:52:0.077:2	./.	./.	./.
chr9	69202009	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,8:31:194:0.041:2	./.	./.	./.
chr9	69202040	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:103,87:31:190:0.458:2	0/1:66,55:32:121:0.455:2	./.	0/1:160,35:32:196:0.179:2	0/1:148,32:32:180:0.178:2	0/1:115,80:31:195:0.410:2	./.	0/1:140,58:32:198:0.293:2	0/1:192,5:34:197:0.025:2	./.	0/1:145,53:32:198:0.268:2
chr9	69202059	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:50,13:32:63:0.206:2	0/1:146,48:32:194:0.247:2	0/1:147,52:32:200:0.261:2	./.	0/1:149,45:32:194:0.232:2	./.	0/1:156,41:33:197:0.208:2	./.	./.
chr9	69202107	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,7:30:104:0.067:2	./.	0/1:179,13:31:192:0.068:2	./.	./.	./.	./.	./.	./.
chr9	69202123	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,11:32:184:0.060:2	./.	0/1:164,19:33:183:0.104:2	./.	./.
chr9	69202195	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,11:27:144:0.076:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	69247501	rs200551401	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:40,21:16:61:0.344:2	./.	./.	0/1:39,22:13:61:0.361:2	0/1:18,28:12:46:0.609:2	0/1:31,25:9:56:0.446:2	0/1:27,30:13:57:0.526:2	0/1:34,12:11:46:0.261:2	0/1:36,38:17:74:0.514:2	0/1:45,33:16:78:0.423:2	0/1:33,16:14:49:0.327:2
chr9	69247550	rs200506336	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,51:33:52:0.981:2	0/1:0,21:31:21:1.00:2	0/1:0,9:31:9:1.00:2	0/1:1,45:32:46:0.978:2	0/1:0,34:32:34:1.00:2	0/1:0,46:31:46:1.00:2	0/1:2,44:32:46:0.957:2	0/1:0,32:32:32:1.00:2	0/1:0,65:33:65:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,52:31:52:1.00:2
chr9	69247582	rs201502273	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,7:32:68:0.103:2	./.	0/1:47,4:32:51:0.078:2	./.	./.	./.
chr9	69255602	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,27:33:197:0.137:2	./.
chr9	69255640	.	C	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:159,37:31:198:0.189:2	0/1:158,36:30:194:0.186:2	0/1:62,16:30:78:0.205:2	0/1:181,16:31:197:0.081:2	0/1:166,28:29:194:0.144:2	0/1:162,36:30:198:0.182:2	0/1:176,22:31:198:0.111:2	0/1:154,43:31:197:0.218:2	0/1:176,22:31:198:0.111:2	0/1:173,23:30:196:0.117:2	0/1:159,38:30:197:0.193:2
chr9	69256816	rs62557779	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:100,80:32:180:0.444:2	0/1:104,90:32:194:0.464:2	0/1:168,26:31:194:0.134:2	0/1:157,27:30:184:0.147:2	0/1:170,20:31:191:0.105:2	0/1:110,77:31:187:0.412:2	./.	0/1:110,72:31:182:0.396:2	./.	./.	0/1:128,41:31:170:0.243:2
chr9	69256869	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:191,7:33:198:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr9	69261279	.	A	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,14:32:107:0.131:2	./.	./.	./.	0/1:156,40:33:196:0.204:2	./.	0/1:157,42:34:199:0.211:2	0/1:117,81:33:198:0.409:2	./.
chr9	69262437	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:116,37:31:153:0.242:2	0/1:140,45:31:185:0.243:2	./.	0/1:154,26:31:180:0.144:2	0/1:144,38:31:182:0.209:2	0/1:130,43:30:173:0.249:2	0/1:143,36:31:179:0.201:2	./.	0/1:135,43:32:178:0.242:2	./.	./.
chr9	69382208	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,12:28:109:0.110:2	./.	./.	./.	./.	./.
chr9	69382227	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:95,22:31:117:0.188:2	0/1:75,11:32:86:0.128:2	./.	0/1:52,13:30:65:0.200:2	./.	0/1:68,9:30:77:0.117:2	./.	0/1:70,10:30:80:0.125:2	./.	./.	0/1:69,13:31:82:0.159:2
chr9	69423520	rs199749672	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,16:28:74:0.216:2	./.	./.	./.	./.
chr9	69423558	rs199996482	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:137,25:29:163:0.154:2	0/1:84,21:31:105:0.200:2	0/1:14,3:29:17:0.176:2	0/1:99,63:29:162:0.389:2	0/1:60,15:28:75:0.200:2	0/1:160,36:29:197:0.184:2	0/1:144,10:25:155:0.065:2	0/1:160,24:29:184:0.130:2	0/1:152,39:30:194:0.204:2	0/1:177,15:29:192:0.078:2	0/1:154,29:29:184:0.158:2
chr9	69423641	rs201906409	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:157,31:33:188:0.165:2	0/1:157,38:31:195:0.195:2	0/1:56,28:32:84:0.333:2	0/1:102,74:33:176:0.420:2	0/1:117,76:32:193:0.394:2	0/1:145,51:32:196:0.260:2	0/1:154,24:32:179:0.135:2	0/1:155,24:33:179:0.134:2	0/1:141,57:34:198:0.288:2	0/1:172,24:33:196:0.122:2	0/1:161,37:33:198:0.187:2
chr9	69423668	rs199885239	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,4:32:77:0.052:2	./.	./.	0/1:188,11:31:199:0.055:2	0/1:106,14:32:120:0.117:2	0/1:145,22:32:167:0.132:2	0/1:182,12:33:194:0.062:2	0/1:148,43:33:191:0.225:2	0/1:170,18:34:188:0.096:2
chr9	69423721	rs201112034	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:30:83:0.048:2	0/1:44,7:29:51:0.137:2	./.	0/1:86,4:31:91:0.044:2	0/1:61,14:29:75:0.187:2	0/1:91,8:31:99:0.081:2
chr9	69423740	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:31:59:0.068:2	./.	./.	0/1:59,3:34:62:0.048:2	./.	./.
chr9	69423796	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.	0/1:17,5:32:22:0.227:2	0/1:0,9:33:9:1.00:2	0/1:8,6:29:14:0.429:2	0/1:28,6:32:34:0.176:2
chr9	69440042	rs200967970	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	./.	./.	./.	./.	./.	./.
chr9	69440046	rs202121326	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	0/1:10,3:34:13:0.231:2
chr9	69440144	rs71226084	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,6:31:32:0.188:2	0/1:9,4:32:13:0.308:2	./.	./.	./.	./.	./.	./.
chr9	69440226	rs71243579	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:63,8:33:71:0.113:2	0/1:45,4:33:49:0.082:2	./.	0/1:0,5:33:5:1.00:2	0/1:2,2:33:4:0.500:2	0/1:37,6:32:43:0.140:2	./.	0/1:29,7:32:36:0.194:2	0/1:0,8:34:8:1.00:2	0/1:40,9:33:49:0.184:2	0/1:61,6:30:67:0.090:2
chr9	70176767	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,13:32:47:0.277:2	./.
chr9	70176851	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:174,17:27:191:0.089:2	0/1:111,13:26:124:0.105:2	0/1:43,8:28:51:0.157:2	0/1:184,7:27:191:0.037:2	0/1:186,10:28:196:0.051:2	0/1:186,10:26:196:0.051:2	0/1:189,9:30:198:0.045:2	0/1:173,18:27:191:0.094:2	0/1:179,14:27:193:0.073:2	0/1:182,12:28:194:0.062:2	0/1:181,9:26:190:0.047:2
chr9	70177441	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,5:32:43:0.116:2	./.
chr9	70177486	rs199726212	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,14:30:98:0.143:2	./.	./.
chr9	70177555	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:32:138:0.029:2	./.	./.	./.
chr9	70177655	rs201783089	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,46:30:95:0.484:2	0/1:40,31:30:71:0.437:2	0/1:11,11:29:22:0.500:2	0/1:116,51:29:167:0.305:2	0/1:77,25:29:102:0.245:2	0/1:109,62:29:171:0.363:2	0/1:61,19:26:80:0.238:2	0/1:91,40:28:131:0.305:2	0/1:69,30:30:99:0.303:2	0/1:71,34:30:105:0.324:2	0/1:80,33:27:113:0.292:2
chr9	70177662	.	T	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:73,6:30:79:0.076:2	./.	0/1:172,8:26:180:0.044:2	0/1:95,5:29:100:0.050:2	./.	./.	./.	./.	0/1:106,5:30:111:0.045:2	./.
chr9	70177822	rs199878768	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,2:27:2:1.00:2	0/1:0,2:28:2:1.00:2	./.	0/1:0,8:27:8:1.00:2	0/1:0,4:29:4:1.00:2	0/1:0,14:27:14:1.00:2	0/1:0,7:28:7:1.00:2	0/1:0,4:25:4:1.00:2	0/1:0,5:28:5:1.00:2	0/1:2,7:26:9:0.778:2	0/1:0,5:25:5:1.00:2
chr9	70177849	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,3:32:22:0.136:2	0/1:15,3:32:18:0.167:2	./.	./.	0/1:24,6:31:30:0.200:2	0/1:36,4:29:40:0.100:2	0/1:27,5:32:32:0.156:2	./.	0/1:19,9:32:28:0.321:2	0/1:26,5:31:31:0.161:2	./.
chr9	70177977	.	G	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,21:31:71:0.296:2	0/1:30,15:32:45:0.333:2	0/1:7,3:31:10:0.300:2	0/1:102,37:31:139:0.266:2	0/1:79,29:31:108:0.269:2	0/1:81,45:31:126:0.357:2	0/1:61,29:31:90:0.322:2	0/1:90,37:31:127:0.291:2	0/1:44,33:32:77:0.429:2	0/1:58,26:31:84:0.310:2	0/1:41,16:33:57:0.281:2
chr9	70178013	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:62,6:26:68:0.088:2	0/1:39,5:27:44:0.114:2	./.	./.	0/1:91,10:28:101:0.099:2	0/1:108,10:26:118:0.085:2	0/1:65,6:23:71:0.085:2	./.	0/1:44,12:29:56:0.214:2	0/1:54,15:27:69:0.217:2	./.
chr9	70178208	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2
chr9	70178410	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,59:32:140:0.421:2	0/1:51,32:32:83:0.386:2	0/1:5,4:32:9:0.444:2	0/1:110,67:32:177:0.379:2	0/1:72,33:32:105:0.314:2	0/1:84,52:31:136:0.382:2	0/1:71,38:32:109:0.349:2	0/1:80,58:32:138:0.420:2	0/1:134,65:32:200:0.327:2	0/1:72,57:32:130:0.442:2	0/1:91,52:33:143:0.364:2
chr9	70178429	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:195,4:33:199:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr9	70178477	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,27:32:196:0.138:2	./.	0/1:170,15:33:185:0.081:2	./.	./.
chr9	70178493	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:139,18:30:157:0.115:2	./.	./.	./.	./.	./.	./.
chr9	70178565	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:31:65:0.062:2	./.	./.	./.	./.
chr9	70178579	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,8:33:76:0.105:2
chr9	70427683	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,14:31:45:0.311:2	./.
chr9	70427767	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:161,15:28:177:0.085:2	0/1:109,14:26:123:0.114:2	0/1:43,8:29:51:0.157:2	0/1:177,14:28:191:0.073:2	0/1:185,10:22:195:0.051:2	0/1:179,15:27:194:0.077:2	0/1:188,9:29:197:0.046:2	0/1:183,14:29:197:0.071:2	0/1:186,12:29:198:0.061:2	0/1:168,21:26:189:0.111:2	0/1:179,11:27:190:0.058:2
chr9	70428061	.	C	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	0/1:0,2:29:2:1.00:2	0/1:1,8:31:9:0.889:2	0/1:3,3:33:6:0.500:2	0/1:0,3:30:3:1.00:2	0/1:3,3:33:6:0.500:2	0/1:3,6:32:9:0.667:2	./.
chr9	70428357	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,11:30:48:0.229:2	./.
chr9	70428402	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,8:30:93:0.086:2	./.	./.
chr9	70428571	.	G	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,16:26:53:0.308:2	0/1:25,9:26:34:0.265:2	0/1:10,4:30:14:0.286:2	0/1:123,8:26:131:0.061:2	0/1:71,18:27:89:0.202:2	0/1:91,22:23:113:0.195:2	0/1:62,9:27:71:0.127:2	0/1:58,11:26:69:0.159:2	0/1:56,17:28:73:0.233:2	0/1:70,12:26:82:0.146:2	0/1:52,12:25:64:0.188:2
chr9	70428578	.	T	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,11:30:125:0.088:2	0/1:87,5:30:92:0.054:2	./.	0/1:57,6:30:63:0.095:2	./.	./.	./.	./.
chr9	70428651	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,4:32:72:0.056:2	0/1:79,4:33:83:0.048:2	./.	./.	./.	./.	./.
chr9	70428765	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:110,25:31:135:0.185:2	0/1:68,20:33:88:0.227:2	./.	./.	0/1:156,35:30:191:0.183:2	0/1:164,30:31:194:0.155:2	0/1:166,25:30:191:0.131:2	./.	0/1:150,42:32:192:0.219:2	0/1:132,50:31:182:0.275:2	0/1:145,25:30:170:0.147:2
chr9	70428893	.	G	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:76,45:32:121:0.372:2	0/1:32,19:31:51:0.373:2	0/1:9,10:30:19:0.526:2	0/1:89,51:30:140:0.364:2	0/1:74,46:30:120:0.383:2	0/1:120,57:30:177:0.322:2	0/1:73,33:31:106:0.311:2	0/1:114,67:31:181:0.370:2	0/1:97,54:32:151:0.358:2	0/1:89,57:32:146:0.390:2	0/1:58,35:31:93:0.376:2
chr9	70428929	.	T	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:84,19:28:103:0.184:2	0/1:38,9:27:47:0.191:2	./.	./.	0/1:114,10:26:124:0.081:2	0/1:124,19:29:143:0.133:2	0/1:89,14:27:103:0.136:2	./.	0/1:101,30:29:132:0.229:2	0/1:102,27:27:130:0.209:2	0/1:75,14:29:89:0.157:2
chr9	70429124	.	C	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:20,5:27:25:0.200:2	./.	./.	0/1:26,6:31:32:0.188:2	./.	0/1:26,6:25:32:0.188:2	./.	0/1:33,6:29:39:0.154:2	./.	0/1:13,3:32:16:0.188:2	0/1:16,3:30:19:0.158:2
chr9	70429326	.	G	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:82,35:32:118:0.299:2	0/1:43,31:31:74:0.419:2	./.	0/1:127,45:32:172:0.262:2	0/1:55,31:31:86:0.360:2	0/1:81,56:31:137:0.409:2	0/1:64,35:32:99:0.354:2	0/1:80,66:32:146:0.452:2	0/1:115,45:32:160:0.281:2	0/1:77,49:31:126:0.389:2	0/1:99,75:32:174:0.431:2
chr9	70429393	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,5:30:196:0.026:2	0/1:170,28:32:198:0.141:2	./.	0/1:173,20:32:193:0.104:2	./.	./.
chr9	70429409	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,3:31:17:0.176:2	./.	0/1:153,28:30:181:0.155:2	./.	./.	./.	./.	./.	./.
chr9	70429495	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,18:33:82:0.220:2
chr9	70429703	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	70475005	.	G	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,34:30:57:0.596:2	0/1:19,9:33:28:0.321:2	0/1:10,3:31:13:0.231:2	0/1:49,34:32:83:0.410:2	0/1:19,47:30:66:0.712:2	0/1:29,60:30:89:0.674:2	0/1:7,50:31:57:0.877:2	0/1:23,52:31:76:0.693:2	0/1:79,46:29:125:0.368:2	0/1:53,17:29:70:0.243:2	0/1:46,74:32:124:0.617:2
chr9	70475070	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,21:32:87:0.241:2	0/1:39,16:32:55:0.291:2	0/1:18,3:32:21:0.143:2	0/1:157,8:32:166:0.048:2	0/1:98,11:29:109:0.101:2	0/1:151,23:32:174:0.132:2	0/1:105,6:32:111:0.054:2	0/1:127,20:31:147:0.136:2	0/1:172,19:32:192:0.099:2	0/1:171,8:32:179:0.045:2	0/1:158,27:30:185:0.146:2
chr9	70483186	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,31:33:193:0.161:2	./.
chr9	70483189	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.	./.	./.
chr9	70483224	.	C	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:158,35:31:193:0.181:2	0/1:160,38:31:198:0.192:2	0/1:66,18:29:84:0.214:2	0/1:182,16:29:198:0.081:2	0/1:177,22:30:200:0.111:2	0/1:176,23:29:199:0.116:2	0/1:168,27:30:195:0.138:2	0/1:167,31:29:198:0.157:2	0/1:174,21:31:195:0.108:2	0/1:177,20:31:197:0.102:2	0/1:171,27:31:198:0.136:2
chr9	70484398	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:159,12:31:171:0.070:2	0/1:183,15:31:198:0.076:2	0/1:193,5:29:198:0.025:2	0/1:183,9:31:192:0.047:2	0/1:176,10:30:187:0.054:2	0/1:183,8:31:191:0.042:2	./.	0/1:183,9:32:192:0.047:2	./.	./.	./.
chr9	70484451	rs202024368	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:135,30:32:165:0.182:2	0/1:173,25:34:198:0.126:2	./.	./.	./.	./.	./.	./.	./.
chr9	70488860	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:135,7:30:142:0.049:2	./.	./.	./.	./.	./.	./.	0/1:190,9:29:199:0.045:2	./.
chr9	70490018	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:159,18:30:177:0.102:2	0/1:155,15:31:170:0.088:2	./.	0/1:162,6:31:168:0.036:2	./.	0/1:170,7:31:177:0.040:2	0/1:169,11:29:180:0.061:2	./.	0/1:171,10:29:181:0.055:2	./.	./.
chr9	70856998	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:157,31:31:188:0.165:2	0/1:140,50:32:190:0.263:2	./.	0/1:184,11:29:195:0.056:2	0/1:150,44:32:194:0.227:2	0/1:159,32:31:191:0.168:2	0/1:165,29:32:194:0.149:2	./.	0/1:168,27:33:195:0.138:2	./.	./.
chr9	70858156	.	T	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:131,18:33:149:0.121:2	./.	./.	./.	0/1:168,29:33:197:0.147:2	./.	0/1:164,35:34:199:0.176:2	0/1:113,82:32:196:0.421:2	./.
chr9	70862549	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:168,29:31:197:0.147:2	0/1:182,15:34:197:0.076:2	./.	./.	./.	./.	./.	./.	./.
chr9	70862602	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:147,37:33:185:0.201:2	0/1:157,37:32:194:0.191:2	0/1:169,14:31:183:0.077:2	0/1:176,16:33:192:0.083:2	0/1:176,16:31:192:0.083:2	0/1:167,27:32:194:0.139:2	./.	0/1:170,17:34:187:0.091:2	./.	./.	0/1:177,12:29:189:0.063:2
chr9	70863777	rs373301918	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:165,19:31:184:0.103:2	0/1:147,25:31:172:0.145:2	0/1:83,9:28:92:0.098:2	0/1:183,15:30:198:0.076:2	0/1:140,14:30:154:0.091:2	0/1:183,17:29:200:0.085:2	0/1:164,9:32:173:0.052:2	0/1:175,20:30:196:0.103:2	0/1:188,9:30:197:0.046:2	0/1:191,7:30:198:0.035:2	0/1:181,17:30:199:0.086:2
chr9	70863815	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,32:33:181:0.177:2	./.
chr9	70917874	rs373388570	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,8:31:195:0.042:2	./.	./.	./.
chr9	70917883	rs201887492	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,35:31:183:0.191:2	./.	./.	./.	./.	./.	./.	./.
chr9	70917898	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:32:121:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	70918001	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,23:27:111:0.213:2	./.	./.	./.
chr9	70918118	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,34:28:98:0.347:2	./.	0/1:62,23:28:85:0.271:2	./.	./.	./.
chr9	70918189	.	A	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:77,63:29:140:0.450:2	0/1:39,30:30:69:0.435:2	0/1:16,5:30:21:0.238:2	0/1:104,9:28:113:0.080:2	0/1:56,43:28:99:0.434:2	0/1:95,25:28:120:0.208:2	0/1:51,29:29:80:0.363:2	0/1:81,23:29:104:0.221:2	0/1:65,30:30:95:0.316:2	0/1:44,34:29:78:0.436:2	0/1:55,24:30:79:0.304:2
chr9	70918196	.	C	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:139,12:29:151:0.079:2	./.	./.	0/1:117,6:30:123:0.049:2	0/1:110,9:30:119:0.076:2	./.	0/1:95,7:30:102:0.069:2	0/1:120,6:29:126:0.048:2	0/1:93,12:28:105:0.114:2	./.	./.
chr9	70918296	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:140,4:33:144:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr9	70918333	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,5:27:86:0.058:2	./.	./.	./.	0/1:91,7:29:99:0.071:2	./.	./.
chr9	70918542	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:30:6:0.500:2	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.
chr9	70918647	rs199944841	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,3:27:11:0.273:2	./.	./.	./.	./.	./.
chr9	70918694	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,3:32:17:0.176:2	./.	./.	./.	./.	./.	./.	./.
chr9	70918964	rs377378837	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:150,27:29:177:0.153:2	0/1:155,21:30:176:0.119:2	0/1:90,4:30:94:0.043:2	0/1:157,31:30:188:0.165:2	0/1:153,33:28:186:0.177:2	0/1:161,26:28:187:0.139:2	0/1:150,39:29:189:0.206:2	0/1:165,27:28:192:0.141:2	0/1:157,31:30:188:0.165:2	0/1:136,39:28:175:0.223:2	0/1:145,31:28:176:0.176:2
chr9	70919114	rs375902116	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:76,11:26:87:0.126:2	0/1:39,12:28:51:0.235:2	0/1:16,3:30:19:0.158:2	0/1:90,16:26:106:0.151:2	0/1:117,13:26:130:0.100:2	0/1:78,11:28:89:0.124:2	0/1:49,17:30:66:0.258:2	0/1:110,14:27:124:0.113:2	0/1:64,18:30:82:0.220:2	0/1:64,10:29:74:0.135:2	0/1:33,10:29:43:0.233:2
chr9	70919276	rs370692831	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:141,50:32:191:0.262:2	0/1:88,35:32:123:0.285:2	0/1:13,8:32:21:0.381:2	0/1:161,34:31:196:0.174:2	0/1:112,17:31:129:0.132:2	0/1:156,33:32:190:0.175:2	0/1:106,30:32:136:0.221:2	0/1:136,28:31:164:0.171:2	0/1:109,59:33:168:0.351:2	0/1:106,28:31:134:0.209:2	0/1:156,34:32:190:0.179:2
chr9	70919325	rs374846563	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:147,46:31:193:0.238:2	0/1:149,48:31:197:0.244:2	0/1:34,11:30:45:0.244:2	0/1:155,40:30:195:0.205:2	0/1:173,19:30:192:0.099:2	0/1:154,41:30:195:0.210:2	0/1:163,34:30:197:0.173:2	0/1:163,33:30:196:0.168:2	0/1:134,59:31:193:0.306:2	0/1:162,37:30:199:0.186:2	0/1:146,49:30:195:0.251:2
chr9	70919413	rs368170841	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:133,57:32:190:0.300:2	0/1:144,46:31:190:0.242:2	0/1:86,39:30:125:0.312:2	0/1:143,53:31:197:0.270:2	0/1:167,27:31:195:0.139:2	0/1:136,56:31:193:0.292:2	0/1:159,40:32:199:0.201:2	0/1:138,57:31:195:0.292:2	0/1:125,65:32:190:0.342:2	0/1:129,66:32:195:0.338:2	0/1:134,58:31:192:0.302:2
chr9	70919491	rs371601345	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:127,42:30:169:0.249:2	0/1:132,55:30:187:0.294:2	0/1:78,34:28:112:0.304:2	0/1:138,37:30:176:0.211:2	0/1:118,42:29:160:0.263:2	0/1:126,43:30:169:0.254:2	0/1:136,35:27:172:0.205:2	0/1:128,40:29:168:0.238:2	0/1:136,40:31:176:0.227:2	0/1:123,44:30:168:0.263:2	0/1:126,36:30:162:0.222:2
chr9	70919524	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,13:14:96:0.137:2	./.	./.	./.	0/1:154,20:14:175:0.115:2	0/1:172,13:16:186:0.070:2	./.	./.	./.
chr9	70919542	rs374837919	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:160,33:32:193:0.171:2	0/1:143,51:32:194:0.263:2	0/1:62,31:32:93:0.333:2	0/1:163,31:33:194:0.160:2	0/1:161,31:31:192:0.161:2	0/1:164,31:32:195:0.159:2	0/1:145,18:32:163:0.110:2	0/1:175,22:31:197:0.112:2	0/1:169,28:33:197:0.142:2	0/1:152,38:32:190:0.200:2	0/1:157,34:32:191:0.178:2
chr9	70919616	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:184,11:32:195:0.056:2	0/1:179,11:31:190:0.058:2	0/1:104,7:31:111:0.063:2	0/1:189,7:31:196:0.036:2	./.	0/1:191,7:31:198:0.035:2	0/1:186,6:31:192:0.031:2	./.	./.	0/1:191,5:33:196:0.026:2	0/1:186,13:32:199:0.065:2
chr9	70919734	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,11:32:200:0.055:2	./.	./.	./.
chr9	70919842	rs202132489	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:187,6:28:193:0.031:2	./.	./.	./.	./.	./.	0/1:172,5:27:177:0.028:2	./.	0/1:194,5:30:199:0.025:2	./.	./.
chr9	70919884	rs200991697	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:191,7:31:198:0.035:2	./.	./.	./.	0/1:161,6:30:167:0.036:2	./.	0/1:158,5:30:163:0.031:2	./.	./.	0/1:179,5:33:184:0.027:2	0/1:186,7:32:193:0.036:2
chr9	70993152	rs141603287	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:56,12:30:68:0.176:2	0/1:63,10:32:73:0.137:2	./.	0/1:107,12:31:119:0.101:2	./.	0/1:84,33:32:117:0.282:2	0/1:97,14:32:111:0.126:2	0/1:117,11:30:128:0.086:2	0/1:105,6:33:111:0.054:2	0/1:95,11:32:106:0.104:2	./.
chr9	70999315	rs17081271	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:115,80:32:195:0.410:2	0/1:64,44:32:108:0.407:2	./.	0/1:110,90:32:200:0.450:2	0/1:111,87:32:198:0.439:2	0/1:108,84:32:192:0.438:2	./.	0/1:112,86:32:198:0.434:2	0/1:110,84:33:194:0.433:2	./.	./.
chr9	71396239	rs8114	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,4:32:8:0.500:2	./.	./.	0/1:1,6:32:7:0.857:2	0/1:0,13:31:13:1.00:2	0/1:0,18:31:18:1.00:2	0/1:6,8:31:14:0.571:2	0/1:0,9:30:9:1.00:2	./.	0/1:4,4:32:8:0.500:2	0/1:0,20:31:20:1.00:2
chr9	71396426	rs12349968	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:27,15:32:42:0.357:2	0/1:11,9:32:20:0.450:2	./.	./.	0/1:12,17:30:29:0.586:2	./.	./.	./.	./.	./.	./.
chr9	71396746	rs975123	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:33:31:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,40:32:41:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,45:32:45:1.00:2	./.	0/1:0,39:33:39:1.00:2	0/1:0,56:33:56:1.00:2
chr9	71397187	rs75064770	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,9:32:24:0.375:2	./.	./.	./.	./.	./.	./.
chr9	71397734	rs1412988	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,61:33:144:0.424:2	0/1:55,42:33:97:0.433:2	0/1:0,19:31:19:1.00:2	0/1:0,185:33:185:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,138:32:139:1.00:2	0/1:0,117:33:117:1.00:2	0/1:0,169:32:169:1.00:2	0/1:2,166:34:168:0.988:2	0/1:0,119:33:119:1.00:2	0/1:0,173:33:173:1.00:2
chr9	71397747	rs2017	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:84,52:32:136:0.382:2	0/1:54,39:32:93:0.419:2	0/1:16,6:32:22:0.273:2	0/1:1,189:33:190:0.995:2	./.	0/1:87,73:32:160:0.456:2	0/1:0,121:32:121:1.00:2	0/1:0,174:32:174:1.00:2	0/1:2,168:33:170:0.988:2	0/1:64,58:33:122:0.475:2	0/1:88,89:33:177:0.503:2
chr9	71398086	rs12006032	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,42:31:105:0.400:2	./.	./.	./.	./.	./.	./.
chr9	71398277	rs146520243	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,45:32:112:0.402:2	0/1:43,20:32:63:0.317:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	71398954	rs146591524	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,58:31:105:0.552:2	0/1:30,32:32:62:0.516:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	71532547	rs61752951	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,33:33:66:0.500:2	0/1:27,25:33:52:0.481:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	71532572	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:33:87:0.046:2	./.
chr9	71623368	rs367968925	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:32:109:0.037:2	./.	./.	./.	./.
chr9	71628139	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:33:129:0.031:2	./.	./.	./.	./.	./.
chr9	71628207	rs3730386	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,3:32:17:0.176:2	0/1:44,48:32:92:0.522:2	./.	./.	./.	./.	0/1:46,32:32:78:0.410:2	./.	./.
chr9	71831298	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,5:32:41:0.122:2	./.	./.	./.	./.
chr9	71841018	rs17062695	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,73:33:124:0.589:2	./.	./.	./.	./.
chr9	71842705	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:33:73:0.055:2	./.
chr9	71843023	rs2309428	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:29:24:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,5:29:5:1.00:2	0/1:1,44:29:45:0.978:2	0/1:1,42:29:43:0.977:2	0/1:1,36:28:37:0.973:2	0/1:13,17:29:30:0.567:2	0/1:0,46:29:46:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,36:29:36:1.00:2
chr9	71851877	rs34774441	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,12:31:25:0.480:2	./.
chr9	71862975	rs2282336	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:32:38:1.00:2	0/1:1,23:32:24:0.958:2	0/1:3,3:32:6:0.500:2	0/1:18,22:31:40:0.550:2	./.	./.	0/1:34,30:31:65:0.469:2	0/1:18,23:32:41:0.561:2	./.	0/1:17,21:32:38:0.553:2	./.
chr9	71862987	rs2095876	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:1,24:32:25:0.960:2	0/1:3,4:30:7:0.571:2	0/1:26,22:32:48:0.458:2	./.	./.	0/1:42,31:30:73:0.425:2	0/1:19,25:32:44:0.568:2	./.	0/1:22,20:32:42:0.476:2	./.
chr9	71998936	rs35386391	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,22:31:58:0.379:2	./.	./.	./.
chr9	72000798	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:30:78:0.051:2	./.	./.	./.	./.	./.
chr9	72003036	rs867366	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,81:32:172:0.471:2	0/1:56,54:32:111:0.491:2	0/1:19,14:33:33:0.424:2	0/1:123,67:33:190:0.353:2	0/1:1,125:32:126:0.992:2	./.	./.	./.	0/1:98,96:34:194:0.495:2	./.	0/1:97,92:33:189:0.487:2
chr9	72067059	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.	./.	./.	./.
chr9	72082835	rs141287424	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,57:32:123:0.463:2	./.	./.	./.	./.	./.
chr9	72131577	rs34788368	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,28:30:68:0.412:2	./.	./.	./.	./.
chr9	72333436	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:33:125:0.032:2	./.	./.
chr9	72472831	rs10780682	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,15:33:30:0.500:2	0/1:9,9:33:18:0.500:2	./.	0/1:14,15:33:29:0.517:2	0/1:5,8:32:13:0.615:2	0/1:13,7:33:20:0.350:2	0/1:5,5:28:10:0.500:2	0/1:24,11:33:35:0.314:2	0/1:14,18:33:32:0.563:2	./.	0/1:35,27:32:62:0.435:2
chr9	72501780	rs142028833	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,59:32:114:0.518:2	./.	./.	./.	./.	./.
chr9	72723165	rs181738196	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,32:30:67:0.478:2	./.	./.	./.	./.
chr9	72741247	rs2296772	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,43:32:106:0.406:2	./.	0/1:42,32:31:74:0.432:2	./.
chr9	72741298	rs2296773	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,29:32:69:0.420:2	./.	0/1:27,17:34:44:0.386:2	./.
chr9	72741312	rs1998972	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:32:54:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,66:31:66:1.00:2	0/1:39,26:30:65:0.400:2	0/1:1,73:31:74:0.986:2	0/1:0,80:31:80:1.00:2	0/1:35,25:31:60:0.417:2	0/1:0,55:32:55:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,64:31:65:1.00:2
chr9	72897434	rs1180116	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,152:31:152:1.00:2	0/1:0,86:31:86:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,155:30:155:1.00:2	0/1:0,82:30:82:1.00:2	0/1:0,121:30:121:1.00:2	0/1:0,92:30:92:1.00:2	0/1:2,127:31:129:0.984:2	0/1:114,78:32:192:0.406:2	0/1:0,116:31:116:1.00:2	0/1:0,171:31:171:1.00:2
chr9	72897440	rs1180117	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,64:28:156:0.410:2	0/1:42,44:30:86:0.512:2	./.	./.	0/1:4,123:29:127:0.969:2	./.	0/1:63,55:30:119:0.466:2	./.
chr9	72912914	rs61752954	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:32:18:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr9	72933753	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:31:56:0.071:2	./.	./.	./.
chr9	72933774	rs11142365	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,26:29:60:0.433:2	0/1:25,20:28:45:0.444:2	./.	./.	0/1:36,32:28:68:0.471:2	./.	./.	./.
chr9	73150365	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.
chr9	73150873	rs17535963	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,24:33:77:0.312:2	./.	./.	./.	./.	0/1:2,57:32:59:0.966:2	0/1:23,19:31:42:0.452:2	0/1:38,29:31:67:0.433:2
chr9	73150918	rs41287373	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,43:30:113:0.381:2	./.	./.	./.	./.	0/1:2,86:31:88:0.977:2	0/1:26,31:30:57:0.544:2	0/1:60,40:31:100:0.400:2
chr9	73150984	rs6560142	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,120:32:124:0.968:2	0/1:1,74:32:75:0.987:2	0/1:7,7:31:14:0.500:2	0/1:75,73:31:148:0.493:2	0/1:71,64:31:135:0.474:2	./.	0/1:2,115:31:117:0.983:2	0/1:96,73:31:169:0.432:2	./.	0/1:44,44:31:88:0.500:2	0/1:54,72:31:127:0.571:2
chr9	73151059	rs148848073	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,93:32:191:0.489:2	./.	./.	./.	./.
chr9	73151715	rs7033976	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:30:70:1.00:2	0/1:0,32:31:32:1.00:2	0/1:5,7:30:12:0.583:2	0/1:0,75:31:75:1.00:2	0/1:31,36:30:67:0.537:2	./.	0/1:0,76:30:76:1.00:2	0/1:36,52:30:88:0.591:2	0/1:0,70:31:70:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,63:30:63:1.00:2
chr9	73151970	rs3739776	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,102:33:102:1.00:2	0/1:0,63:32:63:1.00:2	./.	0/1:42,33:32:75:0.440:2	0/1:41,31:31:72:0.431:2	./.	0/1:4,58:32:62:0.935:2	0/1:40,44:32:84:0.524:2	./.	0/1:39,33:33:72:0.458:2	0/1:67,53:33:120:0.442:2
chr9	73167874	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:33:174:0.023:2	./.	./.
chr9	73225639	rs117283138	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,46:32:91:0.505:2
chr9	73240431	rs73451725	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:28:10:0.400:2	./.	./.	./.	./.	./.	./.	0/1:58,44:31:102:0.431:2	./.
chr9	73255554	rs12351775	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,47:31:108:0.435:2	./.	./.	./.
chr9	73376414	rs4745036	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,50:33:83:0.602:2	./.	0/1:53,24:33:77:0.312:2
chr9	73391369	rs11142587	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,19:34:49:0.388:2	./.	0/1:36,35:33:71:0.493:2
chr9	73408518	rs10868890	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,64:32:64:1.00:2	0/1:0,33:32:33:1.00:2	./.	0/1:0,56:32:56:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,79:31:79:1.00:2	./.	0/1:0,48:32:48:1.00:2	0/1:41,38:32:79:0.481:2
chr9	73461337	rs7862440	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:102,81:32:183:0.443:2	0/1:83,66:31:149:0.443:2	0/1:0,20:32:20:1.00:2	./.	0/1:113,76:30:189:0.402:2	0/1:0,168:31:168:1.00:2	0/1:3,165:32:168:0.982:2	0/1:0,158:32:158:1.00:2	0/1:0,176:32:176:1.00:2	0/1:84,100:32:185:0.543:2	0/1:104,75:33:179:0.419:2
chr9	73479436	rs370736548	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,6:22:18:0.333:2	./.	./.	./.	0/1:20,6:16:26:0.231:2	0/1:16,8:18:24:0.333:2	0/1:15,11:19:26:0.423:2	0/1:9,7:16:16:0.438:2	0/1:21,6:24:27:0.222:2	0/1:9,7:21:16:0.438:2	0/1:20,5:24:25:0.200:2
chr9	74305020	rs17475375	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,39:32:104:0.375:2	./.	0/1:34,18:31:52:0.346:2	./.
chr9	74305098	rs2297089	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,35:32:65:0.538:2	./.
chr9	74319576	rs25696	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,47:32:100:0.475:2	./.	./.
chr9	74319677	rs17057133	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,41:30:85:0.482:2	./.	./.
chr9	74332970	rs25692	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:29,23:31:52:0.442:2	0/1:17,8:33:25:0.320:2	./.	./.	./.	./.	./.	0/1:31,21:31:52:0.404:2	./.	./.	./.
chr9	74344821	rs25693	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,19:30:56:0.339:2	./.	./.	./.	./.	./.	0/1:25,30:30:55:0.545:2	0/1:41,44:29:85:0.518:2
chr9	74345158	rs25694	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,35:31:65:0.538:2	./.	./.	./.	./.	./.	0/1:17,19:32:36:0.528:2	0/1:29,28:32:57:0.491:2
chr9	74345807	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:31:104:0.038:2	./.	./.	./.	./.	./.
chr9	74349846	rs25695	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,69:32:112:0.616:2	./.	./.	./.	./.	./.	0/1:40,24:32:64:0.375:2	0/1:56,53:33:109:0.486:2
chr9	74354983	rs25691	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,5:29:26:0.192:2	./.	./.	./.	./.	./.	0/1:13,16:29:29:0.552:2	0/1:39,19:28:58:0.328:2
chr9	74355028	rs25690	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,18:29:44:0.409:2	./.	./.	./.	./.	./.	0/1:16,23:29:39:0.590:2	0/1:27,23:28:50:0.460:2
chr9	74360096	rs25689	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:38,33:32:71:0.465:2	0/1:12,15:31:27:0.556:2	./.	0/1:37,26:31:63:0.413:2	./.	0/1:38,34:30:72:0.472:2	./.	./.	./.	0/1:27,15:32:42:0.357:2	0/1:44,31:32:75:0.413:2
chr9	74360209	rs3739783	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,14:30:33:0.424:2	0/1:15,9:27:24:0.375:2	./.	./.	./.	0/1:18,20:28:38:0.526:2	./.	./.	./.	./.	./.
chr9	74360234	rs25688	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,10:31:26:0.385:2	./.	./.	./.	./.	./.	0/1:20,21:31:41:0.512:2	0/1:24,17:32:41:0.415:2
chr9	74360395	rs76670837	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,12:29:43:0.279:2	./.	0/1:32,23:29:55:0.418:2	./.	./.	./.	./.
chr9	74361234	rs188485494	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	74587708	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,41:31:149:0.277:2	0/1:74,17:32:91:0.187:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	74671719	rs13295099	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,6:32:19:0.316:2	0/1:4,5:33:9:0.556:2	./.	0/1:11,4:34:15:0.267:2	0/1:9,7:32:16:0.438:2	0/1:0,17:32:17:1.00:2	0/1:6,7:29:13:0.538:2	0/1:5,6:33:11:0.545:2	0/1:9,8:34:17:0.471:2	0/1:11,4:27:15:0.267:2	0/1:26,18:33:44:0.409:2
chr9	74817561	rs77548027	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,8:18:82:0.098:2
chr9	74817641	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:32:44:0.091:2
chr9	74825614	rs148805997	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,39:34:90:0.433:2	./.
chr9	74834384	rs10869148	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,10:33:27:0.370:2	0/1:14,15:31:29:0.517:2	./.	./.	0/1:19,10:30:29:0.345:2	0/1:34,10:31:44:0.227:2	./.	./.	./.	0/1:37,17:31:54:0.315:2	0/1:39,29:32:68:0.426:2
chr9	74840668	rs61752956	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,21:31:53:0.396:2	./.
chr9	74846104	rs17057536	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:71,58:33:129:0.450:2	0/1:38,29:32:67:0.433:2	0/1:12,6:33:18:0.333:2	./.	0/1:51,63:31:114:0.553:2	0/1:73,57:32:130:0.438:2	./.	./.	./.	0/1:63,66:32:129:0.512:2	0/1:71,64:32:135:0.474:2
chr9	74860104	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,4:32:91:0.044:2	./.	./.	./.	./.	./.	./.	./.
chr9	74862331	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,4:32:143:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr9	74975066	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,4:32:113:0.035:2	./.	./.	./.	./.	./.	./.
chr9	74975067	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,4:30:112:0.036:2	./.	./.	./.	./.	./.	./.
chr9	74975076	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:107,4:31:111:0.036:2	./.	./.	./.	./.	./.	./.
chr9	74975136	rs2809270	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,109:32:109:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,2:30:2:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,88:32:88:1.00:2	0/1:1,63:32:64:0.984:2	0/1:0,108:32:108:1.00:2	0/1:0,109:33:109:1.00:2	0/1:0,102:33:102:1.00:2	0/1:0,107:32:107:1.00:2
chr9	74979391	rs11143280	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,3:32:10:0.300:2	./.	./.	./.	./.	./.	./.
chr9	75303653	rs2589615	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:13,19:33:32:0.594:2	0/1:15,12:32:27:0.444:2	./.	0/1:0,28:32:28:1.00:2	./.	0/1:0,22:31:22:1.00:2	./.	./.	0/1:21,18:32:39:0.462:2	0/1:16,6:32:22:0.273:2	0/1:26,20:33:46:0.435:2
chr9	75315438	rs1796993	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,6:31:22:0.273:2	./.	./.	./.	./.	0/1:20,14:32:34:0.412:2	./.	./.
chr9	75407159	rs17058153	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,92:30:184:0.500:2	./.	./.	./.	./.	./.
chr9	75431076	rs34532421	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:53,42:32:95:0.442:2	0/1:28,29:32:57:0.509:2	0/1:13,4:31:17:0.235:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	75545882	rs13959	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:18,24:32:42:0.571:2	0/1:19,6:32:25:0.240:2	0/1:8,3:32:11:0.273:2	./.	0/1:0,49:32:49:1.00:2	./.	0/1:1,45:31:46:0.978:2	0/1:32,39:32:71:0.549:2	0/1:0,52:33:52:1.00:2	0/1:27,17:32:44:0.386:2	0/1:32,36:32:68:0.529:2
chr9	75775235	rs1050305	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,27:33:49:0.551:2	./.	./.	./.	./.	./.	0/1:19,20:32:39:0.513:2	./.
chr9	75784999	rs147263644	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,5:30:49:0.102:2	./.	./.
chr9	77257346	rs2273975	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:32,26:30:59:0.448:2	0/1:8,13:32:21:0.619:2	./.	0/1:26,30:31:56:0.536:2	./.	0/1:36,40:30:76:0.526:2	0/1:49,17:32:66:0.258:2	./.	0/1:37,32:32:69:0.464:2	0/1:38,18:31:56:0.321:2	./.
chr9	77367203	rs55679040	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,14:29:35:0.400:2	./.	./.	./.
chr9	77376633	rs2274925	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,69:32:162:0.426:2	./.	./.
chr9	77376647	rs2274924	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,61:34:155:0.394:2	./.	./.
chr9	77403574	rs74431358	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,8:16:67:0.119:2	./.	0/1:69,10:15:79:0.127:2	./.	./.	./.	./.	0/1:44,7:19:51:0.137:2
chr9	77407636	rs4145894	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,21:31:55:0.382:2	0/1:3,55:31:58:0.948:2	0/1:51,36:31:87:0.414:2	./.	0/1:32,49:32:81:0.605:2	0/1:23,35:32:58:0.603:2	0/1:1,101:32:102:0.990:2
chr9	77415284	rs7859201	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:32:69:1.00:2	0/1:0,47:33:47:1.00:2	0/1:7,11:34:18:0.611:2	0/1:56,48:33:104:0.462:2	./.	./.	./.	./.	./.	./.	./.
chr9	77416972	rs11144089	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,59:31:137:0.431:2	0/1:37,32:31:69:0.464:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	77436641	rs7018994	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,19:28:39:0.500:2	0/1:15,16:30:31:0.516:2	./.	./.	0/1:42,32:29:74:0.432:2	0/1:35,27:29:62:0.435:2	0/1:31,36:28:67:0.537:2	./.	0/1:23,30:30:53:0.566:2	0/1:31,19:29:50:0.380:2	0/1:0,62:29:63:1.00:2
chr9	77457237	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.	./.	./.	./.	./.	./.
chr9	77563087	rs2769058	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:32:7:0.571:2	0/1:48,29:31:77:0.377:2	0/1:25,9:29:34:0.265:2	./.	./.	0/1:32,29:31:61:0.475:2	0/1:42,25:32:67:0.373:2	0/1:31,37:31:68:0.544:2	0/1:43,32:31:75:0.427:2
chr9	77684690	rs3752955	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:32:8:1.00:2	0/1:36,38:31:74:0.514:2	0/1:16,16:31:32:0.500:2	./.	0/1:0,45:30:45:1.00:2	./.	0/1:34,45:31:79:0.570:2	0/1:23,19:30:42:0.452:2	./.
chr9	77684824	rs146012983	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,19:32:50:0.380:2	./.	./.	./.	./.	./.
chr9	77752510	rs2273769	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,66:32:134:0.493:2	0/1:58,50:31:108:0.463:2	0/1:76,83:32:159:0.522:2	./.	./.	./.	./.	./.
chr9	77761642	rs2146044	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,17:29:34:0.500:2	0/1:13,8:29:21:0.381:2	./.	./.	./.	0/1:30,30:29:60:0.500:2	0/1:17,9:30:26:0.346:2	./.	./.	./.	./.
chr9	78506145	rs7020560	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:28:15:0.533:2	./.	./.	./.	0/1:17,3:31:20:0.150:2	./.	./.	./.
chr9	78506187	rs7040769	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,19:32:38:0.500:2	./.	./.	./.	0/1:33,14:31:47:0.298:2	./.	./.	0/1:12,7:31:19:0.368:2
chr9	78773953	rs2297342	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:26,25:32:51:0.490:2	0/1:11,21:31:32:0.656:2	./.	./.	./.	./.	0/1:66,50:32:116:0.431:2	0/1:47,53:32:100:0.530:2	./.	0/1:35,44:32:79:0.557:2	./.
chr9	78790138	rs11999771	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,5:32:19:0.263:2	./.	./.	./.
chr9	78790143	rs77068135	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,4:31:19:0.211:2	./.	./.	./.
chr9	78790153	rs4281168	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,15:31:15:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,3:32:3:1.00:2	./.	0/1:1,19:31:20:0.950:2	0/1:1,21:30:22:0.955:2	0/1:0,19:32:19:1.00:2	0/1:0,14:32:14:1.00:2	./.	0/1:0,14:33:14:1.00:2	0/1:0,15:31:15:1.00:2
chr9	78790182	rs62556619	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:26:7:0.571:2	0/1:4,4:27:8:0.500:2	./.	./.	./.	0/1:12,4:27:16:0.250:2	./.	./.	./.	./.	./.
chr9	78790187	rs10118321	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:27:7:1.00:2	0/1:1,7:27:8:0.875:2	./.	./.	./.	0/1:10,6:27:16:0.375:2	./.	./.	./.	./.	./.
chr9	78790192	rs200914896	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,7:33:14:0.500:2	0/1:5,3:31:8:0.375:2	./.	./.	./.	./.
chr9	78790207	rs10124596	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:33:7:0.429:2	./.	./.	./.	./.	./.
chr9	78790212	rs62556620	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:28:5:0.600:2	0/1:3,3:27:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	78794542	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:33:52:0.077:2	./.	./.	./.	./.	./.
chr9	78803507	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,46:33:99:0.465:2	./.
chr9	78803512	rs10521468	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:31:8:0.750:2	./.	0/1:60,44:30:104:0.423:2	0/1:96,70:31:166:0.422:2	./.	./.	./.	0/1:52,51:31:103:0.495:2	./.
chr9	78809646	rs34619779	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,32:31:82:0.390:2	./.	./.	0/1:49,52:32:101:0.515:2
chr9	78853916	rs17062264	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,39:31:100:0.390:2	./.	./.
chr9	78907125	rs1546150	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,18:32:18:1.00:2	0/1:0,7:31:7:1.00:2	./.	./.	./.	./.	./.	0/1:0,6:31:6:1.00:2	./.	./.	./.
chr9	78910241	rs2842480	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,101:32:191:0.529:2	./.	0/1:108,89:33:197:0.452:2	./.	./.	./.
chr9	78910273	rs2643325	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,87:31:183:0.475:2	./.	0/1:112,71:31:183:0.388:2	./.	./.	./.
chr9	78917107	rs11144823	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,16:33:36:0.444:2	./.	./.	./.
chr9	78925765	rs61744750	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,13:32:25:0.520:2	./.	./.	./.	./.	./.
chr9	78936358	rs1110222	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,20:32:41:0.488:2	0/1:13,5:32:18:0.278:2	./.	./.	0/1:16,33:32:49:0.673:2	0/1:16,25:30:41:0.610:2	0/1:23,21:32:44:0.477:2	0/1:20,33:32:53:0.623:2	./.	./.	./.
chr9	78936492	rs1110223	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,13:31:37:0.351:2	0/1:18,13:33:31:0.419:2	./.	./.	0/1:23,29:32:52:0.558:2	0/1:25,19:32:44:0.432:2	0/1:33,21:32:54:0.389:2	0/1:32,27:32:59:0.458:2	./.	./.	./.
chr9	78937974	rs3001772	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,13:31:38:0.342:2	0/1:14,12:32:26:0.462:2	0/1:5,4:31:9:0.444:2	0/1:40,28:31:68:0.412:2	0/1:0,60:31:60:1.00:2	0/1:42,35:31:77:0.455:2	0/1:0,64:32:64:1.00:2	0/1:1,47:31:48:0.979:2	0/1:32,26:32:58:0.448:2	./.	./.
chr9	78938043	rs2495207	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:36,25:30:61:0.410:2	0/1:16,16:30:32:0.500:2	./.	./.	0/1:48,52:29:100:0.520:2	0/1:46,50:29:96:0.521:2	0/1:35,37:29:73:0.514:2	0/1:61,41:30:102:0.402:2	./.	./.	./.
chr9	78938186	rs2803429	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,17:30:37:0.459:2	0/1:15,9:33:24:0.375:2	./.	./.	0/1:23,12:32:35:0.343:2	0/1:20,22:32:42:0.524:2	0/1:15,17:32:32:0.531:2	0/1:27,13:31:40:0.325:2	./.	./.	./.
chr9	78942956	rs2259969	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,52:28:101:0.515:2	0/1:22,26:28:48:0.542:2	0/1:18,5:29:23:0.217:2	0/1:89,80:29:169:0.473:2	0/1:0,182:29:182:1.00:2	0/1:66,54:29:120:0.450:2	0/1:2,191:29:193:0.990:2	0/1:0,172:29:172:1.00:2	0/1:78,73:29:151:0.483:2	./.	./.
chr9	78947461	rs146437583	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,39:32:104:0.375:2	./.	./.	./.
chr9	78969059	rs7036921	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,44:31:97:0.454:2	0/1:46,32:31:78:0.410:2	./.	./.	./.	0/1:91,82:30:173:0.474:2	0/1:109,70:31:180:0.391:2	./.	0/1:71,67:31:138:0.486:2	./.	./.
chr9	78973431	rs72745135	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,69:33:128:0.539:2	0/1:43,35:32:78:0.449:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	79003516	rs10781358	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,33:29:67:0.493:2	./.	0/1:29,45:29:74:0.608:2
chr9	79007448	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,24:31:51:0.471:2	./.
chr9	79009106	rs2490582	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,3:31:3:1.00:2	0/1:0,8:32:8:1.00:2	./.	0/1:0,6:32:6:1.00:2	0/1:0,6:34:6:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,3:28:3:1.00:2	0/1:0,6:30:6:1.00:2	./.
chr9	79117751	rs2282683	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:28:10:0.500:2	0/1:27,28:30:55:0.509:2	./.	0/1:32,35:30:67:0.522:2	0/1:35,30:29:65:0.462:2	./.	0/1:41,35:29:76:0.461:2	./.	0/1:32,36:30:68:0.529:2
chr9	79118329	rs1057406	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,5:30:19:0.263:2	0/1:106,84:30:190:0.442:2	./.	0/1:88,86:30:174:0.494:2	0/1:92,93:30:185:0.503:2	./.	0/1:100,79:31:179:0.441:2	./.	0/1:87,61:31:148:0.412:2
chr9	79118661	rs1057419	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:29:88:1.00:2	0/1:1,48:28:49:0.980:2	0/1:6,7:30:13:0.538:2	0/1:0,95:29:95:1.00:2	0/1:40,35:28:75:0.467:2	0/1:25,46:29:71:0.648:2	0/1:29,49:29:78:0.628:2	0/1:52,33:28:85:0.388:2	0/1:28,59:29:87:0.678:2	0/1:0,61:28:61:1.00:2	0/1:1,108:29:109:0.991:2
chr9	79118813	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:27:58:0.069:2	./.	./.	./.	./.	./.
chr9	79118903	rs707739	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,5:33:7:0.714:2	0/1:16,28:32:44:0.636:2	./.	0/1:21,22:32:43:0.512:2	0/1:27,34:32:61:0.557:2	./.	0/1:21,13:33:34:0.382:2	./.	0/1:23,33:32:56:0.589:2
chr9	79119482	rs41288763	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,14:30:36:0.389:2	./.	./.	./.	./.	./.
chr9	79119752	rs683969	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:32,43:32:75:0.573:2	0/1:21,17:32:38:0.447:2	./.	./.	0/1:18,21:31:39:0.538:2	./.	0/1:29,30:31:59:0.508:2	0/1:0,61:32:61:1.00:2	./.	./.	./.
chr9	79120003	rs143046583	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,20:33:43:0.465:2
chr9	79120298	rs12340744	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,77:31:176:0.438:2	./.	./.	./.
chr9	79120475	rs589561	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:33:4:0.750:2	0/1:10,6:32:16:0.375:2	0/1:4,5:32:9:0.556:2	0/1:1,10:33:11:0.909:2	0/1:0,6:32:6:1.00:2	0/1:11,7:31:18:0.389:2	./.	0/1:8,3:34:11:0.273:2
chr9	79121085	rs785907	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,14:32:14:1.00:2	0/1:0,6:32:6:1.00:2	./.	0/1:0,12:32:12:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,11:31:11:1.00:2	0/1:5,9:33:14:0.643:2	0/1:0,13:32:13:1.00:2	0/1:0,10:32:10:1.00:2
chr9	79121286	rs12342009	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,10:31:16:0.625:2	./.	./.	./.
chr9	79121380	rs11144931	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:33:15:0.600:2	./.	0/1:12,11:31:23:0.478:2	./.	./.	0/1:18,10:31:28:0.357:2	./.	0/1:13,9:33:22:0.409:2
chr9	79121384	rs56097164	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:11,12:31:23:0.522:2	0/1:4,9:32:13:0.692:2	./.	0/1:6,9:32:15:0.600:2	./.	0/1:12,11:31:23:0.478:2	./.	./.	0/1:18,11:32:29:0.379:2	./.	0/1:12,9:32:21:0.429:2
chr9	79121783	rs72749246	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,19:32:40:0.475:2	0/1:14,9:32:23:0.391:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	79121906	rs1130268	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,30:31:31:0.968:2	0/1:0,26:32:26:1.00:2	./.	0/1:33,19:31:52:0.365:2	0/1:28,12:30:40:0.300:2	0/1:19,22:31:41:0.537:2	./.	0/1:32,35:30:67:0.522:2	./.	0/1:0,55:32:57:1.00:2	0/1:41,21:32:62:0.339:2
chr9	79234288	rs190592343	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,13:31:39:0.333:2	./.	./.	./.	./.	./.	./.	./.
chr9	79318367	rs4745571	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,36:32:40:0.900:2	0/1:24,18:30:42:0.429:2	./.	0/1:19,13:32:32:0.406:2	./.	0/1:29,20:32:49:0.408:2	./.	./.
chr9	79318471	rs560094	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,15:32:40:0.375:2	0/1:16,12:32:28:0.429:2	./.	0/1:0,43:31:43:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,23:30:23:1.00:2	0/1:1,24:32:25:0.960:2	0/1:23,24:31:47:0.511:2	0/1:0,33:31:33:1.00:2	0/1:0,38:31:38:1.00:2	0/1:37,18:32:55:0.327:2
chr9	79318677	rs561970	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,29:33:39:0.744:2	0/1:14,10:33:24:0.417:2	./.	0/1:1,30:33:31:0.968:2	0/1:1,30:32:31:0.968:2	0/1:0,35:32:36:1.00:2	0/1:0,35:33:35:1.00:2	0/1:28,23:30:51:0.451:2	0/1:0,46:33:46:1.00:2	0/1:0,34:32:34:1.00:2	0/1:33,29:32:62:0.468:2
chr9	79318921	rs620985	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,79:32:140:0.564:2	0/1:26,40:31:66:0.606:2	0/1:7,5:33:12:0.417:2	0/1:2,92:32:94:0.979:2	0/1:53,34:32:87:0.391:2	0/1:1,109:33:110:0.991:2	0/1:5,91:32:96:0.948:2	0/1:65,44:32:109:0.404:2	0/1:0,108:33:108:1.00:2	0/1:71,42:32:113:0.372:2	0/1:66,74:32:141:0.529:2
chr9	79318995	rs11145014	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,23:32:59:0.390:2	./.	./.
chr9	79318998	rs620552	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,46:32:83:0.554:2	0/1:27,22:32:49:0.449:2	0/1:8,5:31:13:0.385:2	0/1:1,61:31:62:0.984:2	0/1:0,56:31:56:1.00:2	0/1:0,55:31:56:1.00:2	0/1:0,43:32:43:1.00:2	0/1:47,40:32:87:0.460:2	0/1:0,57:32:57:1.00:2	0/1:0,61:32:61:1.00:2	0/1:35,54:32:90:0.607:2
chr9	79319874	rs3739523	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,30:30:84:0.357:2	./.	./.	./.	./.	./.	./.
chr9	79320095	rs3739524	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,17:32:35:0.486:2	./.	./.	./.	./.	0/1:22,19:33:41:0.463:2	./.
chr9	79320640	rs512110	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,35:32:62:0.565:2	0/1:27,23:32:50:0.460:2	./.	0/1:0,69:31:69:1.00:2	0/1:1,51:31:52:0.981:2	0/1:0,91:31:91:1.00:2	0/1:1,65:30:66:0.985:2	0/1:36,41:31:77:0.532:2	0/1:0,95:31:95:1.00:2	0/1:0,48:31:48:1.00:2	0/1:45,43:32:88:0.489:2
chr9	79320847	rs2077181	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,53:33:103:0.515:2	./.	./.	0/1:147,5:33:152:0.033:2	./.	0/1:38,38:33:76:0.500:2	./.
chr9	79321276	rs517634	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,29:30:66:0.439:2	0/1:18,27:30:45:0.600:2	0/1:3,5:29:8:0.625:2	0/1:1,70:30:71:0.986:2	0/1:0,81:30:81:1.00:2	0/1:0,70:30:70:1.00:2	0/1:0,92:29:92:1.00:2	0/1:43,44:30:87:0.506:2	0/1:0,62:31:62:1.00:2	0/1:0,58:30:58:1.00:2	0/1:48,48:30:96:0.500:2
chr9	79321353	rs200041998	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,31:31:63:0.492:2
chr9	79321735	rs200519903	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,33:33:61:0.541:2
chr9	79321871	rs577993	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:100,91:34:191:0.476:2	0/1:106,91:33:197:0.462:2	0/1:30,13:32:43:0.302:2	0/1:1,186:33:187:0.995:2	0/1:101,97:33:198:0.490:2	0/1:1,180:33:181:0.994:2	0/1:2,193:33:195:0.990:2	0/1:110,86:33:196:0.439:2	0/1:0,183:34:183:1.00:2	0/1:112,87:34:199:0.437:2	0/1:118,76:34:194:0.392:2
chr9	79322068	rs683866	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,63:31:128:0.492:2	0/1:34,29:32:63:0.460:2	0/1:1,4:32:5:0.800:2	0/1:1,138:31:139:0.993:2	0/1:67,48:31:115:0.417:2	0/1:1,142:31:143:0.993:2	0/1:1,128:31:129:0.992:2	0/1:77,76:31:153:0.497:2	0/1:0,146:32:146:1.00:2	0/1:59,48:32:107:0.449:2	0/1:64,68:32:132:0.515:2
chr9	79322210	rs180808157	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,62:32:145:0.428:2	./.	./.	./.
chr9	79322674	rs680775	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,21:28:36:0.583:2	0/1:17,19:29:36:0.528:2	0/1:0,9:28:9:1.00:2	0/1:0,57:29:57:1.00:2	0/1:0,32:27:32:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,34:28:34:1.00:2	0/1:21,13:30:34:0.382:2	0/1:0,46:29:46:1.00:2	0/1:0,40:30:40:1.00:2	0/1:28,26:29:54:0.481:2
chr9	79322710	rs11145016	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,30:30:54:0.556:2	0/1:12,18:31:30:0.600:2	./.	0/1:17,8:31:25:0.320:2	./.	./.	./.	./.
chr9	79322720	rs680729	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,29:33:43:0.674:2	0/1:14,13:32:27:0.481:2	0/1:1,4:33:5:0.800:2	0/1:1,54:32:55:0.982:2	0/1:0,29:31:29:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,22:32:22:1.00:2	0/1:20,7:32:27:0.259:2	0/1:0,38:33:38:1.00:2	0/1:0,31:32:31:1.00:2	0/1:27,21:32:48:0.438:2
chr9	79322921	rs41288771	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,61:31:137:0.445:2	./.	./.	./.	./.	./.	./.
chr9	79323891	rs184197058	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,75:31:193:0.391:2	./.	./.	./.
chr9	79324179	rs530978	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,81:32:145:0.559:2	0/1:69,53:32:122:0.434:2	0/1:12,10:31:22:0.455:2	0/1:1,182:31:183:0.995:2	0/1:92,84:31:176:0.477:2	0/1:0,177:31:177:1.00:2	0/1:3,175:32:178:0.983:2	0/1:98,90:32:188:0.479:2	0/1:2,187:33:189:0.989:2	0/1:96,75:32:171:0.439:2	0/1:88,98:32:186:0.527:2
chr9	79324408	rs41289953	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,53:32:114:0.465:2	0/1:48,25:32:73:0.342:2	./.	./.	./.	./.
chr9	79324439	rs12238013	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,26:32:73:0.356:2	./.	./.	./.	./.	0/1:58,56:32:114:0.491:2	./.
chr9	79324741	rs557352	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,14:33:38:0.368:2	0/1:9,11:32:20:0.550:2	0/1:3,3:32:6:0.500:2	0/1:0,49:33:49:1.00:2	0/1:10,7:32:17:0.412:2	0/1:1,36:33:37:0.973:2	0/1:4,25:33:29:0.862:2	0/1:31,25:32:56:0.446:2	0/1:0,37:33:37:1.00:2	0/1:21,8:30:29:0.276:2	0/1:26,32:32:58:0.552:2
chr9	79324955	rs11145017	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,30:31:86:0.349:2	./.	./.	./.	./.	0/1:58,42:32:100:0.420:2	./.
chr9	79325297	rs11145018	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,87:30:154:0.565:2	./.	./.	./.	./.	0/1:69,72:30:141:0.511:2	./.
chr9	79325558	rs600859	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,36:31:66:0.554:2	0/1:18,10:30:28:0.357:2	./.	0/1:0,78:30:78:1.00:2	0/1:17,25:29:42:0.595:2	0/1:0,52:30:52:1.00:2	0/1:1,33:29:34:0.971:2	0/1:30,24:30:54:0.444:2	0/1:0,32:32:32:1.00:2	0/1:26,21:28:47:0.447:2	0/1:29,30:29:59:0.508:2
chr9	79325615	rs611461	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,46:27:80:0.575:2	0/1:25,18:27:43:0.419:2	./.	0/1:0,79:28:79:1.00:2	0/1:0,77:27:77:1.00:2	0/1:0,85:27:85:1.00:2	0/1:0,87:27:87:1.00:2	0/1:54,47:27:101:0.465:2	0/1:0,61:28:61:1.00:2	0/1:0,68:26:68:1.00:2	0/1:39,49:28:88:0.557:2
chr9	79325759	rs11145019	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,54:29:119:0.454:2	./.	./.	./.	./.	0/1:34,31:29:65:0.477:2	./.
chr9	79635450	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,4:32:19:0.211:2
chr9	79827964	rs17723908	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,28:32:72:0.389:2	0/1:42,15:33:57:0.263:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	79897117	rs11145366	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:32:14:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	79917873	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:30:98:0.041:2	./.	./.	./.	./.
chr9	79917907	rs200280742	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:33:138:0.029:2	./.
chr9	79936415	rs17423984	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,53:30:93:0.570:2
chr9	79946961	rs17424026	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,66:32:118:0.559:2	0/1:51,50:32:101:0.495:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	79954545	rs7025532	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,13:32:17:0.765:2	./.	./.	./.	./.	./.	./.	./.	0/1:63,54:33:117:0.462:2
chr9	79968362	rs141138349	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,13:32:31:0.419:2	./.	./.	./.	./.
chr9	79984232	rs17340192	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,36:31:98:0.367:2
chr9	79986057	rs3737289	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:35,29:33:64:0.453:2	0/1:24,26:31:50:0.520:2	0/1:4,9:33:13:0.692:2	./.	0/1:33,22:32:55:0.400:2	./.	0/1:36,34:32:70:0.486:2	./.	0/1:21,28:34:49:0.571:2	./.	0/1:36,39:32:75:0.520:2
chr9	79997212	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,3:35:44:0.068:2	./.	./.	./.	./.	./.	./.
chr9	80030867	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.
chr9	80030913	rs370565019	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:32:102:0.039:2
chr9	80040495	rs61755085	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,13:33:33:0.394:2	./.	./.	./.	./.	./.	./.	./.
chr9	80040566	rs1801259	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:32:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	80046326	rs28395813	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,77:32:182:0.423:2	./.	./.	0/1:92,95:31:187:0.508:2
chr9	80049298	rs1801258	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:33:5:1.00:2	0/1:45,41:31:86:0.477:2	0/1:33,32:32:65:0.492:2	0/1:21,21:32:42:0.500:2	0/1:31,33:31:64:0.516:2	0/1:49,26:31:75:0.347:2	./.	0/1:24,22:33:46:0.478:2	./.
chr9	80336239	rs1059532	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,5:30:152:0.033:2	./.	./.	./.
chr9	80336254	rs1059531	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,5:29:172:0.029:2	./.	./.	./.
chr9	80537095	rs200106152	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,5:31:179:0.028:2	./.	./.	./.	./.	./.
chr9	80537112	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,10:29:195:0.051:2	./.	0/1:189,7:28:196:0.036:2	./.	./.	./.
chr9	80537223	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,5:32:167:0.030:2	./.	0/1:191,5:33:196:0.026:2	./.	./.	./.
chr9	80646047	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:30:38:0.105:2	./.	./.	./.	./.	./.
chr9	80851350	rs10867166	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:29:7:0.571:2	./.	./.	./.	0/1:4,7:30:11:0.636:2	0/1:9,5:31:14:0.357:2	0/1:1,5:31:6:0.833:2	0/1:1,5:29:6:0.833:2	0/1:8,6:31:14:0.429:2	0/1:6,9:30:15:0.600:2	./.
chr9	80869783	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,4:32:51:0.078:2	./.	./.	./.	./.	./.	./.
chr9	80912115	rs2277148	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,15:30:15:1.00:2	0/1:7,10:28:17:0.588:2	0/1:5,8:29:13:0.615:2	0/1:0,9:30:9:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,7:25:7:1.00:2	0/1:4,3:32:7:0.429:2
chr9	80919756	rs3739474	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,40:30:105:0.381:2	0/1:39,31:30:70:0.443:2	0/1:5,13:30:18:0.722:2	0/1:90,55:29:145:0.379:2	0/1:86,57:29:143:0.399:2	0/1:0,129:30:129:1.00:2	0/1:2,140:28:143:0.986:2	0/1:0,159:29:159:1.00:2	0/1:1,147:30:148:0.993:2	0/1:69,71:29:140:0.507:2	0/1:95,64:29:159:0.403:2
chr9	82006446	rs11138190	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,36:31:85:0.424:2	0/1:32,55:32:87:0.632:2	0/1:35,38:32:73:0.521:2	./.	0/1:31,31:33:62:0.500:2	./.	0/1:27,14:32:41:0.341:2
chr9	82006605	rs61731303	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,39:30:93:0.429:2	0/1:40,25:31:65:0.385:2	./.	./.	./.	./.	./.	./.	0/1:56,51:31:107:0.477:2	./.	./.
chr9	82006704	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,5:31:80:0.063:2	./.	./.	./.	./.	./.	./.
chr9	82187750	rs1934610	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,15:30:15:1.00:2	0/1:0,13:29:13:1.00:2	./.	0/1:15,17:29:32:0.531:2	0/1:0,37:28:38:1.00:2	0/1:0,40:30:40:1.00:2	0/1:2,25:28:27:0.926:2	0/1:3,32:31:35:0.914:2	0/1:0,21:30:21:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,7:32:7:1.00:2
chr9	82189914	rs2791566	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:29:22:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,2:28:2:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,13:28:13:1.00:2	0/1:0,18:27:18:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,21:29:21:1.00:2	0/1:0,24:28:24:1.00:2
chr9	82264763	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:29:102:0.039:2
chr9	82333712	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:33:122:0.033:2	./.	./.	./.	./.
chr9	82336742	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,6:32:64:0.094:2
chr9	84200529	rs2228172	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,28:29:53:0.528:2	./.	./.	./.	0/1:1,52:29:53:0.981:2	./.	./.
chr9	84205860	rs8782	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:32:9:0.444:2	./.	0/1:2,35:31:37:0.946:2	./.	./.	./.	0/1:0,80:32:80:1.00:2	0/1:33,14:29:47:0.298:2	0/1:0,49:31:49:1.00:2
chr9	84208115	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:32:13:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	84214974	rs7039820	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:37,29:33:66:0.439:2	0/1:15,10:33:25:0.400:2	./.	0/1:1,66:33:67:0.985:2	./.	./.	./.	./.	0/1:51,29:33:80:0.363:2	./.	0/1:59,37:33:96:0.385:2
chr9	84215034	rs2777781	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,23:31:41:0.561:2	0/1:17,9:32:26:0.346:2	./.	./.	0/1:12,10:30:22:0.455:2	0/1:29,17:30:46:0.370:2	./.	0/1:37,15:30:52:0.288:2	./.	0/1:0,40:31:40:1.00:2	./.
chr9	84267147	rs2228173	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:32:8:1.00:2	0/1:0,100:33:100:1.00:2	0/1:0,80:32:81:1.00:2	0/1:0,103:32:103:1.00:2	0/1:0,99:33:99:1.00:2	0/1:65,54:32:119:0.454:2	0/1:0,98:33:98:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,90:32:90:1.00:2
chr9	84268878	rs2796447	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,34:32:64:0.531:2	0/1:20,31:33:51:0.608:2	./.	./.	./.	0/1:42,34:33:76:0.447:2
chr9	84303175	rs370440694	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	84543573	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:131,54:30:185:0.292:2	./.	./.	./.	./.	./.	./.	./.
chr9	84545038	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:32:171:0.023:2	./.	./.	./.	./.	./.
chr9	84545948	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,32:33:135:0.237:2
chr9	84545955	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,10:30:23:0.435:2	./.	./.	0/1:93,40:29:133:0.301:2	./.	./.	./.	./.	0/1:129,9:29:138:0.065:2
chr9	84545957	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,29:30:133:0.218:2
chr9	84545966	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,12:31:24:0.500:2	./.	./.	0/1:96,39:30:135:0.289:2	./.	./.	./.	./.	0/1:130,18:32:148:0.122:2
chr9	84546136	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:31:160:0.025:2
chr9	84546386	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,18:31:136:0.132:2	./.	./.	./.
chr9	84546440	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,5:33:168:0.030:2
chr9	84546588	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,50:31:189:0.265:2
chr9	84546867	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,28:32:100:0.280:2	./.	./.	./.	./.	./.
chr9	84547036	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,8:33:68:0.118:2	./.	./.	./.	./.	0/1:104,13:32:117:0.111:2
chr9	84547056	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,5:32:84:0.060:2	./.	./.	./.	./.	0/1:124,7:33:131:0.053:2
chr9	84547312	rs201894691	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,57:32:192:0.298:2	0/1:94,37:32:131:0.282:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	84558645	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:150,43:31:193:0.223:2	./.	./.	./.	./.	./.	./.	./.
chr9	84561040	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,36:32:157:0.229:2
chr9	84561047	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,8:29:16:0.500:2	./.	./.	0/1:95,58:29:153:0.379:2	./.	./.	./.	./.	0/1:156,12:28:168:0.071:2
chr9	84561049	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,40:31:167:0.240:2
chr9	84561058	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,8:31:20:0.400:2	./.	./.	0/1:91,59:29:150:0.393:2	./.	./.	./.	./.	0/1:174,15:30:189:0.079:2
chr9	84561313	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:32:77:0.052:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	84561478	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,17:31:123:0.138:2	./.	./.	./.
chr9	84561680	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,40:32:188:0.213:2
chr9	84561959	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,3:32:15:0.200:2	./.	./.	0/1:71,43:31:114:0.377:2	./.	./.	./.	./.	./.
chr9	84562128	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,10:33:73:0.137:2	./.	./.	./.	./.	0/1:106,10:34:116:0.086:2
chr9	84562148	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,6:32:99:0.061:2	./.	./.	./.	./.	0/1:126,7:34:133:0.053:2
chr9	84562404	rs199715321	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,40:31:195:0.205:2	0/1:132,32:31:164:0.195:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	84603808	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:27:197:0.025:2	./.	./.	./.	./.
chr9	84603813	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2	./.	./.	./.	./.
chr9	84604752	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,5:28:100:0.050:2	./.	./.	./.	./.
chr9	84604753	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,5:29:100:0.050:2	./.	./.	./.	./.
chr9	84605787	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,5:32:146:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	84605810	rs375482322	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,5:27:165:0.030:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	84606157	rs200253689	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,14:33:138:0.101:2
chr9	84606174	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,28:33:164:0.171:2
chr9	84606251	rs113761190	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,53:32:194:0.273:2
chr9	84606335	rs184877684	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,23:31:192:0.120:2
chr9	84606343	rs189290500	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,21:31:185:0.114:2
chr9	84606642	rs139704066	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,45:31:89:0.506:2
chr9	84606704	rs145293869	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,6:32:71:0.085:2	./.	./.	./.	0/1:61,54:33:115:0.470:2
chr9	84606864	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,4:35:148:0.027:2	./.	./.	./.	./.	./.	0/1:123,10:35:133:0.075:2	./.
chr9	84606943	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,9:32:157:0.057:2	./.
chr9	84607065	rs372226061	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:29:91:0.044:2	./.	./.	./.	./.
chr9	84607724	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:191,6:32:197:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr9	84607740	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:189,6:30:195:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr9	84607758	rs10867826	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,100:31:187:0.535:2	0/1:64,55:32:119:0.462:2	0/1:17,10:31:27:0.370:2	0/1:191,6:30:197:0.030:2	0/1:76,74:31:150:0.493:2	0/1:95,98:31:193:0.508:2	./.	0/1:79,106:31:185:0.573:2	0/1:101,84:32:185:0.454:2	0/1:101,94:32:195:0.482:2	0/1:95,98:32:193:0.508:2
chr9	84607883	rs372310314	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,6:32:197:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	84608198	rs145142439	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,32:29:70:0.457:2	./.	./.
chr9	84608680	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,11:32:36:0.306:2	./.	./.	./.
chr9	84608982	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,3:32:41:0.073:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	84609057	rs12340419	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,46:30:110:0.418:2	./.	./.	./.	./.	./.
chr9	84609913	rs12341627	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,7:31:17:0.412:2	./.	./.	0/1:22,39:31:61:0.639:2	./.	./.	./.	./.	0/1:39,26:31:65:0.400:2
chr9	84676003	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,3:37:121:0.025:2	./.	./.
chr9	85613354	rs34303676	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,41:31:69:0.594:2	./.	./.	./.
chr9	85627399	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:32:84:0.048:2	./.	./.
chr9	85627408	rs4146960	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,25:32:82:0.305:2	0/1:29,19:32:48:0.396:2	0/1:0,6:31:6:1.00:2	0/1:2,79:31:81:0.975:2	0/1:23,22:31:45:0.489:2	0/1:0,70:31:70:1.00:2	./.	0/1:42,30:31:72:0.417:2	0/1:43,34:33:77:0.442:2	0/1:46,52:32:98:0.531:2	0/1:51,53:32:104:0.510:2
chr9	85640799	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:33:85:0.047:2	./.	./.	./.	./.
chr9	85858109	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	85863091	rs10114696	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,9:28:31:0.290:2	0/1:22,13:30:35:0.371:2	./.	0/1:1,45:29:46:0.978:2	0/1:17,19:29:36:0.528:2	0/1:16,23:30:39:0.590:2	0/1:0,27:28:27:1.00:2	./.
chr9	85863174	rs4877747	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:30:8:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	85912746	rs34913088	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,59:29:115:0.513:2	./.	./.	./.
chr9	86238086	rs2811903	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	0/1:0,5:31:5:1.00:2	./.	./.
chr9	86258357	rs140430693	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,39:32:79:0.494:2	./.	./.	./.	./.
chr9	86258685	rs1052690	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:4,4:33:8:0.500:2	0/1:6,4:33:10:0.400:2	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	0/1:2,9:33:11:0.818:2	./.
chr9	86278913	rs2781004	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:53,44:32:98:0.454:2	0/1:27,27:33:54:0.500:2	./.	./.	./.	./.	0/1:68,58:32:126:0.460:2	0/1:81,58:32:139:0.417:2	./.	0/1:49,34:33:83:0.410:2	./.
chr9	86284178	rs1044175	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,63:31:119:0.529:2	0/1:32,32:32:64:0.500:2	0/1:8,4:29:12:0.333:2	0/1:89,67:31:156:0.429:2	./.	./.	0/1:0,156:31:156:1.00:2	0/1:118,79:30:197:0.401:2	0/1:89,79:32:168:0.470:2	0/1:82,71:31:153:0.464:2	0/1:98,56:31:154:0.364:2
chr9	86399635	rs141041688	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,20:32:51:0.392:2	./.	./.	./.	./.
chr9	86457226	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,27:32:58:0.466:2	./.	./.	./.	./.
chr9	86465131	rs58077086	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:111,84:33:195:0.431:2	0/1:106,92:32:198:0.465:2	./.	0/1:12,166:33:178:0.933:2	0/1:10,174:32:184:0.946:2	0/1:114,80:33:194:0.412:2	./.	./.	./.	0/1:88,94:33:182:0.516:2	0/1:116,68:32:184:0.370:2
chr9	86468715	rs295274	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,36:31:77:0.468:2	0/1:27,24:31:51:0.471:2	0/1:4,8:30:12:0.667:2	0/1:0,75:31:75:1.00:2	0/1:2,57:30:59:0.966:2	0/1:0,73:30:73:1.00:2	0/1:1,60:31:61:0.984:2	./.	0/1:2,78:32:80:0.975:2	0/1:46,25:32:71:0.352:2	0/1:1,110:32:111:0.991:2
chr9	86474167	rs144389488	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:34:147:0.027:2	./.	./.
chr9	86474262	rs79324787	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,41:33:90:0.456:2
chr9	86495335	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:173,15:31:188:0.080:2	0/1:123,10:31:133:0.075:2	./.	./.	./.	0/1:181,11:31:192:0.057:2	./.	./.	0/1:163,18:32:183:0.099:2	./.	./.
chr9	86504005	rs13289566	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,56:31:58:0.966:2	./.	0/1:61,51:32:112:0.455:2	./.	0/1:87,51:31:138:0.370:2
chr9	86518744	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:31:121:0.033:2	./.	./.	./.	./.	./.
chr9	86530368	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,8:31:186:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	86554460	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:30:67:0.060:2	./.
chr9	86588230	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:28:78:0.051:2	./.	./.
chr9	86617265	rs1982151	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,19:32:19:1.00:2	0/1:0,13:32:13:1.00:2	./.	0/1:0,17:32:17:1.00:2	0/1:0,12:32:12:1.00:2	0/1:16,13:32:29:0.448:2	./.	0/1:3,5:33:8:0.625:2	./.	0/1:0,16:33:16:1.00:2	0/1:20,18:32:38:0.474:2
chr9	86618233	rs2118168	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:31:41:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,57:30:57:1.00:2
chr9	86900369	rs56350726	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,25:30:72:0.347:2	./.	./.	./.	./.	./.	./.
chr9	86900926	rs7853758	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,46:31:77:0.597:2	0/1:15,12:32:27:0.444:2	./.	./.	./.	0/1:39,40:30:79:0.506:2	./.	0/1:64,39:32:103:0.379:2	0/1:54,39:33:93:0.419:2	./.	0/1:53,40:31:93:0.430:2
chr9	86917301	rs10868138	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,21:32:33:0.636:2	./.	./.	./.	./.	./.	./.
chr9	86920236	rs7867504	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,61:30:61:1.00:2	0/1:0,50:30:50:1.00:2	./.	./.	0/1:32,35:28:67:0.522:2	0/1:61,44:30:105:0.419:2	./.	0/1:64,61:29:125:0.488:2	0/1:58,39:32:97:0.402:2	./.	0/1:56,46:29:102:0.451:2
chr9	87317248	rs79043758	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,52:32:118:0.441:2
chr9	87563460	rs2289657	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,63:31:143:0.441:2	./.	./.	./.	0/1:76,68:31:145:0.472:2	./.	./.
chr9	87563527	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:30:127:0.031:2	./.	./.	./.
chr9	87636313	rs138503321	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,55:31:107:0.514:2	./.	./.	./.	./.	./.	./.	./.
chr9	88236202	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:30:35:0.114:2	./.	./.	./.	./.
chr9	88248029	rs35531424	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,36:30:87:0.414:2	./.	./.	./.	./.	./.	./.	./.
chr9	88270218	rs201333759	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,13:30:20:0.650:2	./.	./.	./.	./.
chr9	88275838	rs606606	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,35:31:70:0.500:2	./.	./.	./.	./.	./.
chr9	88631496	rs149863465	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,46:32:92:0.500:2	./.	./.
chr9	88636887	rs7450	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,16:30:16:1.00:2	./.	./.	./.	0/1:13,5:32:18:0.278:2	./.	0/1:6,4:31:10:0.400:2	./.
chr9	88648217	rs142242230	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,107:33:188:0.569:2	./.
chr9	88650029	rs7046093	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,113:31:113:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,131:32:131:1.00:2	0/1:0,140:31:140:1.00:2	0/1:85,67:32:152:0.441:2	0/1:0,176:32:176:1.00:2	0/1:0,151:32:151:1.00:2	./.	0/1:0,102:31:102:1.00:2	0/1:0,106:32:106:1.00:2
chr9	88692336	rs3750390	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,70:32:180:0.389:2	./.	./.	./.	./.
chr9	88694179	rs3750389	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,24:32:43:0.558:2	./.	./.	0/1:29,21:32:50:0.420:2	0/1:27,31:32:58:0.534:2	./.	0/1:17,16:32:33:0.485:2	./.
chr9	88881000	rs140993292	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,59:30:146:0.404:2	./.	./.	./.
chr9	88897342	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,4:31:28:0.143:2	./.	./.	./.	./.	./.	./.
chr9	88897375	rs376706009	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,12:30:25:0.480:2	./.	./.	./.	./.	./.	./.
chr9	88937908	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:32:101:0.040:2	./.
chr9	88938668	rs61730257	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,51:30:120:0.425:2	./.	./.	./.	./.	./.	./.	./.
chr9	88959938	rs791323	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,22:31:22:1.00:2	./.	0/1:1,77:31:78:0.987:2	./.	0/1:51,65:31:116:0.560:2	./.	0/1:84,89:33:173:0.514:2	./.	0/1:78,72:33:150:0.480:2
chr9	89561839	rs192178222	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,42:32:77:0.545:2	./.	./.	./.	./.	./.
chr9	90114006	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:33:112:0.036:2	./.	./.
chr9	90114064	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:28:7:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	90219920	rs36207428	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,28:31:59:0.475:2	./.	./.	./.	./.	./.	0/1:24,31:31:55:0.564:2
chr9	90261453	rs17053276	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,22:32:46:0.478:2	./.	./.	./.	./.
chr9	90262235	rs12343465	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,50:31:97:0.515:2	./.	./.	./.	./.
chr9	90262282	rs36213062	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,42:31:87:0.483:2	./.	./.	./.	./.
chr9	90263746	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:31:135:0.030:2	./.	./.	./.	./.	./.
chr9	90264985	rs376519149	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,11:32:41:0.268:2	./.	./.	./.	./.
chr9	90265015	rs3818584	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,20:31:39:0.513:2	0/1:39,17:30:56:0.304:2	0/1:22,11:32:33:0.333:2	0/1:24,17:31:41:0.415:2	0/1:1,43:31:44:0.977:2	0/1:31,16:31:47:0.340:2	0/1:33,23:29:56:0.411:2
chr9	90283509	rs3750539	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,9:31:12:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	90283514	rs3750538	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,9:31:11:0.818:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	90321136	rs36220445	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,41:33:79:0.519:2	./.	./.
chr9	90321583	rs3118863	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,44:31:44:1.00:2	0/1:0,14:32:14:1.00:2	./.	0/1:21,29:31:50:0.580:2	0/1:29,49:31:78:0.628:2	0/1:21,30:31:51:0.588:2	0/1:20,14:32:34:0.412:2	0/1:27,35:31:62:0.565:2	0/1:20,16:32:36:0.444:2	0/1:14,19:31:34:0.576:2	0/1:0,26:31:26:1.00:2
chr9	90322023	rs1056719	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,23:30:23:1.00:2	0/1:0,9:31:9:1.00:2	./.	0/1:1,26:31:27:0.963:2	0/1:11,13:28:24:0.542:2	0/1:20,10:30:30:0.333:2	0/1:20,23:32:43:0.535:2	0/1:0,29:31:29:1.00:2	0/1:18,9:31:27:0.333:2	0/1:0,14:31:14:1.00:2	0/1:0,39:31:39:1.00:2
chr9	90343505	rs11541204	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,14:32:50:0.280:2	./.
chr9	90343780	rs2378757	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,30:32:30:1.00:2	0/1:0,24:33:24:1.00:2	./.	0/1:0,26:33:26:1.00:2	0/1:1,19:32:20:0.950:2	0/1:22,14:32:36:0.389:2	0/1:14,10:31:24:0.417:2	0/1:19,21:33:40:0.525:2	0/1:11,12:33:23:0.522:2	0/1:0,31:33:31:1.00:2	./.
chr9	90388370	rs7853691	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:3,60:32:63:0.952:2	0/1:0,20:31:20:1.00:2	./.	0/1:32,27:32:59:0.458:2	./.	./.	0/1:47,4:34:51:0.078:2	./.	0/1:46,15:30:61:0.246:2	0/1:19,24:31:43:0.558:2	./.
chr9	90388459	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:33:161:0.025:2	./.
chr9	90388501	rs11141967	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,67:30:148:0.453:2
chr9	90388539	rs10735592	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:2,80:30:83:0.976:2	0/1:0,56:31:56:1.00:2	./.	0/1:56,56:30:112:0.500:2	./.	./.	0/1:3,55:31:58:0.948:2	0/1:60,52:31:112:0.464:2	0/1:46,35:31:81:0.432:2	0/1:50,35:31:85:0.412:2	0/1:2,94:30:96:0.979:2
chr9	90396135	rs9410963	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,24:32:24:1.00:2	0/1:14,15:32:29:0.517:2	./.	./.	0/1:0,17:32:17:1.00:2
chr9	90401704	rs144526721	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,91:32:186:0.489:2	./.	./.
chr9	90500189	rs77127003	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,23:28:40:0.575:2	./.	./.	./.	./.	./.	./.	./.
chr9	90500193	rs59256416	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,36:32:72:0.500:2	0/1:37,37:31:74:0.500:2	./.	./.	./.
chr9	90500224	rs58932350	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,37:32:79:0.468:2	0/1:36,33:31:69:0.478:2	./.	./.	./.
chr9	90500405	rs7850542	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,23:31:42:0.561:2	0/1:21,11:29:32:0.344:2	0/1:28,12:32:40:0.300:2	0/1:0,28:32:28:1.00:2	0/1:0,38:33:38:1.00:2	0/1:25,19:34:44:0.432:2	./.	0/1:11,19:32:30:0.633:2
chr9	90501448	rs4076795	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:31:18:0.500:2	0/1:6,6:31:12:0.500:2	0/1:13,11:30:24:0.458:2	0/1:0,17:31:17:1.00:2	0/1:0,25:30:25:1.00:2	0/1:15,11:32:26:0.423:2	./.	0/1:11,11:31:22:0.500:2
chr9	90501514	rs4076794	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,18:33:35:0.514:2	./.	./.	0/1:25,11:32:36:0.306:2	0/1:0,31:33:31:1.00:2	./.	./.	./.
chr9	90502458	rs10868670	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,9:32:16:0.563:2	0/1:42,22:32:64:0.344:2	0/1:61,26:31:87:0.299:2	0/1:48,30:32:78:0.385:2	0/1:2,70:32:72:0.972:2	0/1:0,74:31:74:1.00:2	0/1:48,39:33:88:0.448:2	./.	0/1:59,34:33:93:0.366:2
chr9	90502705	rs61745319	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,44:30:77:0.571:2	0/1:34,31:30:66:0.477:2	./.	./.	./.
chr9	90502819	rs10868671	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,24:30:48:0.500:2	0/1:26,16:31:42:0.381:2	0/1:0,30:29:30:1.00:2	0/1:0,28:30:28:1.00:2	0/1:14,26:31:40:0.650:2	./.	0/1:12,9:32:21:0.429:2
chr9	90503007	rs11789780	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,11:32:22:0.500:2	0/1:9,7:32:16:0.438:2	0/1:3,18:31:21:0.857:2	0/1:14,16:32:30:0.533:2	0/1:12,17:34:29:0.586:2	./.	0/1:11,13:32:24:0.542:2
chr9	90503313	rs76003300	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,39:29:77:0.506:2	./.	./.	./.
chr9	90503451	rs11142017	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	0/1:29,32:29:61:0.525:2	0/1:31,34:31:65:0.523:2	0/1:1,84:30:86:0.988:2	0/1:40,51:31:91:0.560:2	0/1:45,39:30:84:0.464:2	./.	0/1:32,27:30:59:0.458:2
chr9	90503628	rs77208054	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,16:31:34:0.471:2	0/1:15,16:30:31:0.516:2	./.	./.	./.
chr9	90532983	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,10:31:47:0.213:2	./.	./.	./.	./.	./.	./.	./.
chr9	90533053	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,19:33:39:0.487:2	0/1:18,11:31:29:0.379:2	./.	0/1:24,30:32:54:0.556:2	0/1:31,5:32:36:0.139:2	0/1:35,12:33:47:0.255:2	./.	0/1:32,23:33:55:0.418:2	./.	0/1:30,12:32:42:0.286:2	0/1:43,7:32:50:0.140:2
chr9	90533078	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,11:31:33:0.333:2	0/1:12,15:32:27:0.556:2	./.	0/1:23,16:32:39:0.410:2	0/1:26,6:32:32:0.188:2	0/1:34,8:31:42:0.190:2	./.	0/1:26,14:31:40:0.350:2	./.	0/1:13,14:33:27:0.519:2	0/1:24,18:32:42:0.429:2
chr9	90534206	rs2481989	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,34:30:168:0.204:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	90534833	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:31:197:0.025:2	0/1:191,5:33:196:0.026:2	./.	./.
chr9	90534867	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,6:29:194:0.031:2	0/1:189,5:32:194:0.026:2	./.	./.
chr9	90534874	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:31:193:0.026:2	./.	./.	./.
chr9	90535386	rs375322331	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,31:32:82:0.378:2	./.	./.	./.	./.
chr9	90536727	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,79:33:145:0.545:2	./.	./.	./.	./.	./.	./.	./.
chr9	90537568	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:32:103:0.039:2	./.	./.	./.	./.	./.
chr9	90537856	rs79747501	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:8,138:32:146:0.945:2	0/1:3,98:31:101:0.970:2	0/1:12,21:31:33:0.636:2	0/1:7,111:33:118:0.941:2	0/1:35,29:32:64:0.453:2	0/1:96,66:32:162:0.407:2	0/1:42,64:33:106:0.604:2	0/1:7,129:32:136:0.949:2	./.	0/1:2,135:33:137:0.985:2	0/1:104,65:31:169:0.385:2
chr9	90537892	rs147621256	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,39:33:39:1.00:2	0/1:10,6:33:16:0.375:2	0/1:3,58:33:62:0.951:2	0/1:33,13:33:46:0.283:2	0/1:76,27:32:103:0.262:2	0/1:40,14:34:54:0.259:2	0/1:0,37:32:37:1.00:2	./.	0/1:1,45:33:46:0.978:2	0/1:122,46:33:168:0.274:2
chr9	90538186	.	C	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,9:16:73:0.123:2	./.	0/1:53,9:14:62:0.145:2	0/1:44,7:18:51:0.137:2
chr9	90538288	rs199825147	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,20:30:54:0.370:2	./.	0/1:32,10:31:42:0.238:2	./.	./.
chr9	90538360	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,27:33:114:0.237:2	./.	./.	./.
chr9	90588903	rs665983	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,43:32:44:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,68:31:68:1.00:2	0/1:40,37:31:77:0.481:2	0/1:0,68:31:68:1.00:2	0/1:53,33:32:87:0.384:2	0/1:0,76:31:76:1.00:2	0/1:0,68:33:68:1.00:2	0/1:54,21:31:75:0.280:2	0/1:0,57:31:57:1.00:2
chr9	90588970	rs28364935	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,18:30:37:0.486:2	./.	./.	./.
chr9	91150392	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:32:49:0.082:2	./.	./.	./.	./.	./.
chr9	91262387	rs28550932	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,51:32:101:0.505:2	./.	./.	0/1:69,45:32:114:0.395:2	0/1:0,122:32:122:1.00:2
chr9	91262472	rs41304240	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,92:30:198:0.465:2	./.	0/1:90,78:31:168:0.464:2	./.
chr9	91262493	rs72751473	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,83:33:184:0.451:2	./.	./.
chr9	91262494	rs72751474	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,82:33:183:0.451:2	./.	./.
chr9	91262522	rs28429833	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,83:31:175:0.474:2	./.	./.	0/1:77,68:31:145:0.469:2	0/1:2,166:31:168:0.988:2
chr9	91610036	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:35:69:0.058:2	./.	./.
chr9	91610498	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:31:89:0.045:2	./.	./.	./.
chr9	91610543	rs3934594	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:57,38:32:95:0.400:2	0/1:31,25:33:56:0.446:2	0/1:0,8:32:8:1.00:2	./.	0/1:2,64:31:66:0.970:2	0/1:53,37:32:90:0.411:2	0/1:61,42:31:103:0.408:2	./.	0/1:63,46:33:109:0.422:2	./.	0/1:1,98:32:99:0.990:2
chr9	91610929	rs7045576	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:21,22:34:43:0.512:2	0/1:14,12:33:26:0.462:2	0/1:0,3:32:3:1.00:2	./.	0/1:0,22:32:22:1.00:2	0/1:35,22:32:57:0.386:2	0/1:0,25:34:25:1.00:2	./.	0/1:33,29:34:62:0.468:2	./.	0/1:2,53:34:55:0.964:2
chr9	91610987	rs41286041	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,20:31:55:0.364:2	./.	./.	./.
chr9	91616843	rs34075341	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,94:32:189:0.497:2	0/1:96,95:32:191:0.497:2	./.	./.	./.	./.
chr9	91617520	rs117135373	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,39:30:83:0.470:2	0/1:43,35:31:79:0.449:2	./.	./.	./.	./.
chr9	91617816	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:31:48:0.083:2	./.	./.	./.	./.
chr9	91617872	rs41287351	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,13:31:26:0.500:2	0/1:17,10:33:27:0.370:2	./.	./.	./.	./.
chr9	91618102	rs7853537	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,15:28:26:0.577:2	0/1:23,11:30:34:0.324:2	./.	./.	./.	./.
chr9	91618698	rs117145268	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,5:32:11:0.455:2	0/1:2,8:32:10:0.800:2	./.	./.	./.	./.
chr9	91619274	rs1129925	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	0/1:0,4:31:4:1.00:2
chr9	91619784	rs1867	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:1,58:32:59:0.983:2	0/1:1,15:32:16:0.938:2	0/1:2,3:31:5:0.600:2	./.	./.	./.	./.	./.	0/1:40,36:32:76:0.474:2	./.	0/1:1,66:33:67:0.985:2
chr9	91652414	rs2282125	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	./.	0/1:18,21:30:39:0.538:2	0/1:17,16:32:33:0.485:2	0/1:31,33:31:64:0.516:2	./.	0/1:1,25:31:26:0.962:2	./.
chr9	91652415	rs75048868	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,36:33:64:0.563:2	./.	./.
chr9	91652416	rs78082920	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,36:33:64:0.563:2	./.	./.
chr9	91652977	rs56005403	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,7:31:18:0.389:2	./.
chr9	91653138	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,4:30:57:0.070:2	./.	./.	./.	./.	./.	./.	./.
chr9	91656963	rs3750399	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,17:31:18:0.944:2	./.	0/1:0,21:31:21:1.00:2	0/1:21,20:30:41:0.488:2	0/1:12,14:32:26:0.538:2	0/1:16,9:32:25:0.360:2	0/1:0,20:31:20:1.00:2	./.
chr9	91771148	rs4876971	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,34:30:67:0.507:2	./.	./.	./.	./.	0/1:34,24:33:58:0.414:2	./.	./.
chr9	91771642	rs10867158	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,8:33:16:0.500:2	./.	./.	./.	./.	0/1:18,17:32:35:0.486:2	./.	./.
chr9	91978397	rs13295305	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,28:32:54:0.519:2	0/1:22,22:32:44:0.500:2	./.	./.	./.	./.	0/1:26,25:32:51:0.490:2	./.
chr9	91978783	rs45515192	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,34:33:66:0.515:2	0/1:31,31:32:62:0.500:2	./.	./.	./.	./.	0/1:19,22:32:41:0.537:2	./.
chr9	91993724	rs45483393	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,94:32:194:0.485:2	./.	./.	./.
chr9	92003679	rs11526468	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,9:29:16:0.563:2	0/1:7,3:26:10:0.300:2	./.	./.	0/1:18,11:31:29:0.379:2	0/1:21,16:30:37:0.432:2	0/1:13,15:32:28:0.536:2	0/1:22,10:33:32:0.313:2	./.	0/1:14,16:32:30:0.533:2	0/1:10,12:31:22:0.545:2
chr9	92017914	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,30:34:67:0.448:2	./.	./.
chr9	93606309	rs35758162	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,33:30:91:0.363:2	./.	./.	./.	./.	./.	./.	0/1:27,21:27:48:0.438:2
chr9	93637015	rs2290890	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	93639973	rs2290888	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:33:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	93640009	rs2290887	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:30:11:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	94171676	rs371734515	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:32:78:0.051:2	./.	./.	./.	./.
chr9	94172399	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:33:45:0.089:2	./.	./.	./.
chr9	94172975	rs33973463	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,68:32:132:0.515:2	./.	./.	./.	./.	./.	./.
chr9	94456643	rs923771	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:33:39:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,7:33:7:1.00:2	0/1:35,22:33:57:0.386:2	./.	0/1:36,15:32:51:0.294:2	0/1:0,47:32:47:1.00:2	0/1:35,23:33:58:0.397:2	0/1:39,30:32:69:0.435:2	0/1:28,15:33:43:0.349:2	0/1:0,39:33:39:1.00:2
chr9	94456705	rs923770	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,21:31:21:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,4:31:4:1.00:2	0/1:22,16:30:38:0.421:2	./.	0/1:27,13:30:40:0.325:2	0/1:0,12:31:12:1.00:2	0/1:32,7:32:39:0.179:2	0/1:31,14:32:45:0.311:2	0/1:20,8:31:28:0.286:2	0/1:0,23:31:23:1.00:2
chr9	94456714	rs923769	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:32:19:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,4:31:4:1.00:2	0/1:18,13:29:31:0.419:2	./.	0/1:28,14:31:42:0.333:2	0/1:0,12:31:12:1.00:2	0/1:29,7:31:36:0.194:2	0/1:29,17:33:46:0.370:2	0/1:21,6:31:27:0.222:2	0/1:0,23:31:23:1.00:2
chr9	94479584	rs76945345	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,10:31:21:0.476:2	0/1:15,12:31:27:0.444:2	./.	./.	0/1:13,17:31:30:0.567:2	0/1:8,8:31:16:0.500:2	./.
chr9	94486321	rs10761129	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:29:19:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,4:31:4:1.00:2	0/1:7,7:30:14:0.500:2	./.	0/1:15,10:30:25:0.400:2	0/1:0,11:29:11:1.00:2	0/1:16,6:29:22:0.273:2	0/1:5,6:31:11:0.545:2	0/1:12,14:27:26:0.538:2	0/1:6,5:30:11:0.455:2
chr9	94486622	rs2230577	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	94486688	rs10992063	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,37:30:37:1.00:2	0/1:0,15:30:15:1.00:2	0/1:3,3:31:6:0.500:2	./.	./.	./.	0/1:31,32:30:63:0.508:2	0/1:33,24:30:57:0.421:2	0/1:26,12:32:38:0.316:2	0/1:12,17:32:29:0.586:2	0/1:15,29:31:44:0.659:2
chr9	94495608	rs10820900	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,21:30:21:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,7:32:7:1.00:2	./.	0/1:22,7:30:29:0.241:2	0/1:21,4:31:25:0.160:2	./.	0/1:0,19:31:19:1.00:2	0/1:0,16:32:16:1.00:2	./.	0/1:6,3:32:9:0.333:2
chr9	94518328	rs12683181	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,46:32:49:0.939:2	0/1:0,38:32:38:1.00:2	0/1:0,7:31:7:1.00:2	0/1:25,26:31:51:0.510:2	0/1:22,19:31:41:0.463:2	0/1:32,25:30:57:0.439:2	./.	0/1:2,57:31:59:0.966:2	0/1:32,38:31:70:0.543:2	0/1:64,4:28:68:0.059:2	0/1:50,28:32:78:0.359:2
chr9	94800581	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:28:72:0.056:2	./.	./.
chr9	94871090	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	94985637	rs556155	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,42:34:90:0.467:2	./.	./.
chr9	95050104	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:116,4:32:120:0.033:2	./.	./.	./.	./.	./.	./.
chr9	95050468	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,32:32:89:0.360:2	./.	./.	./.	./.	./.	./.	./.
chr9	95068046	rs1133908	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,144:32:147:0.980:2	0/1:3,84:31:87:0.966:2	0/1:14,11:31:25:0.440:2	0/1:124,72:32:196:0.367:2	0/1:105,58:31:163:0.356:2	./.	./.	0/1:135,65:31:200:0.325:2	./.	0/1:0,131:32:131:1.00:2	0/1:120,74:31:194:0.381:2
chr9	95069285	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:32:38:0.105:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	95073514	rs374302480	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:29:98:0.041:2	./.	./.	./.	./.
chr9	95073519	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:31:94:0.043:2	./.	./.	./.	./.
chr9	95073521	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:31:93:0.043:2	./.	./.	./.	./.
chr9	95077691	rs149236794	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,12:33:22:0.545:2	./.	./.	./.	./.
chr9	95078273	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:31:134:0.030:2	./.	./.
chr9	95078413	rs41305617	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,51:33:96:0.531:2	./.	0/1:57,45:33:102:0.441:2	./.
chr9	95219597	rs4744132	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:31:73:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,87:31:87:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,64:31:65:1.00:2	0/1:0,68:31:68:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,115:32:115:1.00:2
chr9	95237027	rs200538582	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,28:33:70:0.400:2	0/1:44,36:32:80:0.450:2	./.	./.	./.	./.	0/1:83,27:33:110:0.245:2	./.
chr9	95274338	rs2296667	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,178:33:179:0.994:2	0/1:0,85:33:85:1.00:2	0/1:14,5:32:19:0.263:2	0/1:100,88:33:189:0.468:2	0/1:50,56:33:106:0.528:2	./.	./.	0/1:104,93:33:197:0.472:2	./.	0/1:0,143:33:143:1.00:2	0/1:90,106:33:196:0.541:2
chr9	95277130	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,11:12:77:0.145:2
chr9	95279985	rs968040	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:0,44:32:44:1.00:2	./.	0/1:38,31:32:69:0.449:2	0/1:27,20:32:47:0.426:2	./.	./.	0/1:32,41:33:73:0.562:2	./.	0/1:0,58:33:58:1.00:2	0/1:39,36:32:75:0.480:2
chr9	95284873	rs9299405	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,38:33:38:1.00:2	0/1:0,16:33:16:1.00:2	./.	0/1:13,18:33:31:0.581:2	0/1:10,10:32:20:0.500:2	./.	./.	0/1:21,13:33:34:0.382:2	./.	0/1:0,21:32:21:1.00:2	0/1:21,23:33:44:0.523:2
chr9	95284982	rs10120210	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,146:30:147:0.993:2	0/1:0,84:29:85:1.00:2	0/1:14,13:30:27:0.481:2	0/1:83,97:30:180:0.539:2	0/1:0,129:29:130:1.00:2	./.	0/1:108,79:29:187:0.422:2	0/1:95,102:29:197:0.518:2	./.	0/1:2,179:29:181:0.989:2	0/1:102,90:29:192:0.469:2
chr9	95397460	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:32:48:0.083:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	95420983	rs10992393	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,19:33:19:1.00:2	0/1:0,22:32:22:1.00:2	./.	./.	./.	./.	./.	0/1:12,21:31:33:0.636:2	./.	0/1:12,14:33:26:0.538:2	0/1:18,15:31:33:0.455:2
chr9	95475743	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:31:113:0.035:2	./.	./.	./.	./.
chr9	95608528	rs139399797	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,33:32:77:0.429:2	./.	./.	./.	./.
chr9	95608658	rs144795971	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,73:32:157:0.465:2
chr9	95610283	rs10992490	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:34:83:0.049:2	./.	./.	./.	./.
chr9	95618093	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:34:187:0.021:2
chr9	95738781	rs3802381	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:31:42:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,8:32:8:1.00:2	0/1:38,25:31:63:0.397:2	0/1:0,53:31:53:1.00:2	./.	0/1:30,35:30:65:0.538:2	0/1:35,33:31:68:0.485:2	./.	0/1:0,58:31:58:1.00:2	0/1:0,48:31:49:1.00:2
chr9	95772651	rs113145792	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,10:30:30:0.333:2	./.	./.	./.	./.	./.	./.	./.
chr9	95780465	rs7048975	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:31:86:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,82:30:82:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,87:30:87:1.00:2	./.	0/1:0,84:30:84:1.00:2	0/1:0,94:31:94:1.00:2	0/1:0,103:31:103:1.00:2	0/1:0,86:31:86:1.00:2
chr9	95782667	rs11790517	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,27:30:27:1.00:2	0/1:0,20:31:20:1.00:2	./.	./.	./.	./.	./.	0/1:30,42:30:72:0.583:2	./.	0/1:26,24:30:50:0.480:2	./.
chr9	95784620	rs41273410	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	0/1:27,22:32:49:0.449:2	./.	./.	./.	./.	./.	./.
chr9	95797755	rs55839347	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,39:33:90:0.433:2	./.	./.
chr9	95838070	rs1131768	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,19:32:38:0.500:2	./.	./.	./.	./.
chr9	95840256	rs1131773	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,85:31:168:0.506:2	./.	./.	./.	./.
chr9	95869981	rs74414352	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,32:31:77:0.416:2	./.
chr9	95872885	rs17593496	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,31:30:84:0.373:2	./.	0/1:37,37:31:74:0.500:2	0/1:28,48:32:76:0.632:2	./.	./.
chr9	95872996	rs33945538	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,29:32:49:0.592:2	./.	0/1:33,20:32:53:0.377:2	./.	./.
chr9	95875381	rs56145587	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,7:28:12:0.583:2	./.
chr9	95887320	rs2275848	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,64:30:65:0.985:2	0/1:1,38:31:39:0.974:2	0/1:0,7:30:7:1.00:2	0/1:0,97:30:97:1.00:2	0/1:1,123:31:124:0.992:2	0/1:83,41:30:124:0.331:2	0/1:0,150:31:150:1.00:2	0/1:85,83:31:168:0.494:2	./.	0/1:1,63:30:64:0.984:2	0/1:0,79:31:79:1.00:2
chr9	95993170	rs7048527	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,17:31:41:0.415:2	./.	0/1:15,34:32:49:0.694:2	0/1:17,25:31:42:0.595:2	./.	0/1:17,14:32:31:0.452:2	./.
chr9	95993326	rs11787888	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,78:29:178:0.438:2	./.	./.	./.	./.	./.	./.	./.
chr9	96015256	rs4744201	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,44:31:44:1.00:2	0/1:0,36:31:36:1.00:2	./.	0/1:24,26:29:50:0.520:2	0/1:41,31:30:72:0.431:2	0/1:38,41:30:79:0.519:2	0/1:25,23:30:48:0.479:2	0/1:33,29:30:62:0.468:2	0/1:0,54:32:54:1.00:2	./.	0/1:16,21:31:37:0.568:2
chr9	96021254	rs55768771	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,31:32:64:0.484:2
chr9	96021312	rs10761203	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,60:31:62:0.968:2	0/1:0,57:30:57:1.00:2	./.	0/1:30,48:30:79:0.615:2	0/1:30,62:29:92:0.674:2	0/1:51,55:29:106:0.519:2	0/1:21,46:30:67:0.687:2	0/1:47,38:30:85:0.447:2	0/1:0,84:31:84:1.00:2	./.	0/1:24,28:31:52:0.538:2
chr9	96021423	rs45534637	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,9:30:10:0.900:2	./.	./.
chr9	96021811	rs141835681	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.	./.
chr9	96024182	rs12000967	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.	./.	./.	./.	./.	./.	./.
chr9	96025002	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,4:32:31:0.129:2	./.	./.	./.	./.	./.	./.	./.
chr9	96026243	rs55981123	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,9:32:16:0.563:2	0/1:54,51:31:105:0.486:2	./.	./.	./.	./.	./.	./.	./.
chr9	96031223	rs116057316	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,49:32:87:0.563:2	./.	./.	./.	./.	./.	./.	./.
chr9	96051123	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:31:75:0.053:2	./.
chr9	96051254	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:30:93:0.043:2	./.	./.	./.	./.	./.
chr9	96051521	rs2169756	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,3:33:3:1.00:2	./.	0/1:0,4:31:4:1.00:2	0/1:0,2:30:2:1.00:2	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	0/1:0,2:30:2:1.00:2
chr9	96052295	rs4744216	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	./.	./.	./.	./.	./.	0/1:30,15:29:45:0.333:2	./.
chr9	96054833	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:33:65:0.062:2
chr9	96055063	rs41278286	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,12:31:12:1.00:2	./.	0/1:40,33:29:73:0.452:2	./.	0/1:46,32:30:78:0.410:2	0/1:46,59:30:105:0.562:2	./.	0/1:0,65:31:65:1.00:2	./.
chr9	96055153	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:20:4:0.750:2	./.	./.	./.	./.	./.
chr9	96080699	rs36081907	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,28:31:58:0.483:2	./.	./.	./.	./.	./.	./.	./.
chr9	96097662	rs4744219	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,23:30:48:0.479:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	96097669	rs62572859	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:135,57:33:192:0.297:2	./.	./.	./.	./.	./.	0/1:25,158:32:183:0.863:2	./.
chr9	96097673	rs62574460	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,16:27:54:0.296:2	./.	./.	./.	0/1:137,56:29:193:0.290:2	0/1:117,71:28:189:0.378:2	0/1:136,59:29:197:0.303:2	./.	./.
chr9	96097747	rs78436873	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:8,174:32:182:0.956:2	0/1:8,161:32:170:0.953:2	0/1:34,43:32:77:0.558:2	0/1:8,180:32:188:0.957:2	0/1:9,184:32:193:0.953:2	0/1:4,183:32:187:0.979:2	0/1:92,108:32:200:0.540:2	0/1:97,94:32:191:0.492:2	0/1:88,103:32:191:0.539:2	0/1:8,182:32:190:0.958:2	0/1:4,182:32:186:0.978:2
chr9	96097916	rs199652907	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,9:28:37:0.243:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	96209943	rs10821128	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:58,47:32:105:0.448:2	0/1:36,32:31:68:0.471:2	./.	0/1:69,46:33:115:0.400:2	0/1:70,42:32:112:0.375:2	0/1:72,57:32:130:0.442:2	0/1:45,35:33:80:0.438:2	0/1:64,52:32:116:0.448:2	./.	./.	./.
chr9	96212813	rs41274386	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,29:31:73:0.397:2	./.	./.	./.	./.	./.
chr9	96213291	rs10992740	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,64:29:140:0.457:2	0/1:94,86:29:180:0.478:2	./.	./.	./.	./.
chr9	96213529	rs7853605	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,7:33:11:0.636:2	./.	./.	0/1:4,5:33:9:0.556:2	0/1:1,2:35:3:0.667:2	./.
chr9	96214928	rs1055710	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.
chr9	96238578	rs10821135	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:52,39:32:91:0.429:2	0/1:20,19:32:39:0.487:2	./.	0/1:67,56:31:123:0.455:2	0/1:43,42:31:85:0.494:2	0/1:0,116:31:116:1.00:2	0/1:54,36:31:90:0.400:2	0/1:64,53:32:117:0.453:2	0/1:70,59:32:129:0.457:2	0/1:51,60:32:111:0.541:2	0/1:85,67:32:152:0.441:2
chr9	96278291	rs200536689	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,3:30:16:0.188:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	96278460	rs143424746	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:178,9:30:187:0.048:2	0/1:177,4:33:181:0.022:2	./.	0/1:177,15:31:192:0.078:2	0/1:182,10:33:193:0.052:2	0/1:176,8:30:184:0.043:2	0/1:186,9:28:195:0.046:2	0/1:182,11:33:193:0.057:2	./.	0/1:166,20:32:186:0.108:2	0/1:161,14:32:175:0.080:2
chr9	96278534	rs143822208	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,4:30:58:0.069:2	./.	./.	./.	0/1:167,10:28:177:0.056:2	0/1:180,16:28:196:0.082:2	0/1:126,15:29:141:0.106:2	./.	./.
chr9	96278538	rs199540473	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:141,16:33:157:0.102:2	./.	./.	./.	./.	./.	0/1:147,36:32:183:0.197:2	./.
chr9	96278545	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,6:30:51:0.118:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	96291782	rs150073581	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,22:29:65:0.338:2	./.
chr9	96292010	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,36:29:72:0.500:2	./.	./.	./.	./.	./.
chr9	96320239	rs150176698	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,11:32:22:0.500:2	./.
chr9	96324547	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:130,4:33:134:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr9	96326682	rs371349890	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:40,4:32:44:0.091:2	./.	./.	0/1:74,11:25:85:0.129:2	./.	./.	0/1:91,8:24:99:0.081:2	0/1:90,10:27:100:0.100:2	./.	0/1:53,5:28:58:0.086:2	./.
chr9	96407920	rs7038310	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,25:31:53:0.472:2	0/1:24,24:31:48:0.500:2	./.	./.	./.	./.	./.
chr9	96407974	rs371297871	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,28:30:48:0.583:2	./.	./.	./.
chr9	96407983	rs9695734	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:15,14:32:29:0.483:2	0/1:10,10:32:20:0.500:2	0/1:2,4:33:6:0.667:2	./.	0/1:31,32:32:63:0.508:2	./.	./.	./.	./.	./.	./.
chr9	96422528	rs147020467	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,16:31:43:0.381:2	./.
chr9	96429439	rs41297181	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:101,72:32:173:0.416:2	0/1:78,43:31:121:0.355:2	./.	./.	./.	./.	./.
chr9	96439235	rs201060871	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,35:31:76:0.461:2	./.
chr9	96714491	rs11793856	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,12:26:23:0.522:2	0/1:6,4:26:10:0.400:2	0/1:1,4:30:5:0.800:2	0/1:0,32:28:32:1.00:2	./.	./.	0/1:16,14:26:30:0.467:2	0/1:21,16:27:37:0.432:2	0/1:13,8:26:21:0.381:2	./.	0/1:13,5:22:18:0.278:2
chr9	96870172	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:34:125:0.032:2
chr9	97055310	rs1536690	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,12:32:24:0.500:2	./.	0/1:57,37:32:94:0.394:2	./.	0/1:2,119:32:121:0.983:2	./.	0/1:68,68:33:136:0.500:2	./.	./.
chr9	97055327	rs35177967	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,53:32:112:0.473:2	./.	./.	./.
chr9	97062137	rs62620753	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,12:30:24:0.500:2	./.	0/1:21,21:32:42:0.500:2	./.	./.
chr9	97080827	rs202219124	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:68,24:28:92:0.261:2	0/1:49,14:29:63:0.222:2	0/1:7,3:30:10:0.300:2	0/1:48,66:29:114:0.579:2	0/1:61,20:29:81:0.247:2	0/1:43,54:29:97:0.557:2	0/1:34,49:30:83:0.590:2	0/1:62,24:30:86:0.279:2	0/1:82,27:29:109:0.248:2	./.	0/1:76,30:29:106:0.283:2
chr9	97081209	rs201752892	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,55:31:193:0.285:2	0/1:99,47:31:146:0.322:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	97081356	rs143377616	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:71,19:28:90:0.211:2	0/1:65,15:28:80:0.188:2	./.	0/1:1,30:27:31:0.968:2	0/1:127,11:25:138:0.080:2	0/1:0,26:28:26:1.00:2	0/1:0,25:26:25:1.00:2	0/1:103,11:25:114:0.096:2	0/1:105,10:29:115:0.087:2	./.	0/1:94,13:28:109:0.121:2
chr9	97081465	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,6:31:43:0.140:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	97081468	rs200435941	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,33:32:180:0.183:2	./.	./.	./.	./.
chr9	97082691	rs180908800	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,11:31:74:0.149:2	./.
chr9	97088121	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,10:30:87:0.115:2	0/1:40,8:29:48:0.167:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	97088148	rs7047404	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,10:31:16:0.625:2	./.	./.	./.	0/1:34,31:32:65:0.477:2	./.	0/1:37,54:31:91:0.593:2	./.	./.
chr9	97088197	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,11:33:94:0.117:2	0/1:47,4:32:51:0.078:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	97209135	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:114,4:32:118:0.034:2	./.	./.	./.	./.	./.	./.
chr9	97325726	rs41281154	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,21:30:51:0.412:2	./.	./.	./.	0/1:14,13:28:27:0.481:2
chr9	97329625	rs61755092	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,45:31:115:0.391:2	./.	./.	./.	./.	./.	./.	./.
chr9	97349591	rs2280301	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,21:30:57:0.368:2	./.	./.	./.	./.
chr9	97349666	rs573212	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:32:95:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,147:33:147:1.00:2	0/1:0,145:32:145:1.00:2	0/1:0,155:33:155:1.00:2	0/1:107,76:32:183:0.415:2	0/1:0,145:32:145:1.00:2	0/1:89,81:34:170:0.476:2	0/1:70,69:33:139:0.496:2	0/1:62,45:33:107:0.421:2
chr9	97365720	rs1769257	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:31:65:1.00:2	0/1:0,44:31:44:1.00:2	0/1:10,3:29:13:0.231:2	0/1:0,105:31:105:1.00:2	0/1:2,102:31:104:0.981:2	0/1:0,127:31:127:1.00:2	0/1:1,125:31:126:0.992:2	0/1:86,60:31:146:0.411:2	0/1:51,51:31:102:0.500:2	0/1:55,45:31:100:0.450:2	0/1:0,93:30:93:1.00:2
chr9	97369149	rs1769259	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,107:32:107:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,147:32:147:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,171:31:171:1.00:2	0/1:0,102:31:102:1.00:2	0/1:0,118:31:118:1.00:2	0/1:69,72:32:141:0.511:2	0/1:65,63:32:128:0.492:2	0/1:0,152:32:152:1.00:2
chr9	97369151	rs1042144	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:65,47:31:112:0.420:2	0/1:41,24:32:65:0.369:2	./.	0/1:88,62:31:150:0.413:2	0/1:42,30:31:72:0.417:2	0/1:101,75:31:176:0.426:2	./.	./.	./.	./.	0/1:88,64:31:152:0.421:2
chr9	97768286	rs10761364	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,21:33:21:1.00:2	0/1:0,17:33:17:1.00:2	./.	0/1:0,48:33:48:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,28:34:28:1.00:2	0/1:1,27:33:28:0.964:2	0/1:0,58:33:58:1.00:2
chr9	97869350	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:30:125:0.032:2	./.	./.	./.	./.	./.
chr9	98209594	rs357564	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,17:32:17:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,2:31:2:1.00:2	./.	0/1:2,5:32:7:0.714:2	0/1:0,15:31:15:1.00:2	0/1:2,4:31:6:0.667:2	./.	0/1:6,9:31:15:0.600:2	0/1:3,9:31:12:0.750:2	./.
chr9	98231084	rs2227970	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,48:30:87:0.552:2	./.	./.	./.	./.	./.	./.	./.
chr9	98238358	rs2066836	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,11:32:24:0.458:2	./.	0/1:22,13:32:35:0.371:2	0/1:0,25:31:25:1.00:2	./.	0/1:6,4:33:10:0.400:2	./.
chr9	98238379	rs1805155	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,12:30:22:0.545:2	./.	./.	./.	./.	./.	./.	./.
chr9	98244242	rs1805154	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,10:31:33:0.303:2	./.
chr9	98638288	rs690528	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	0/1:2,5:25:7:0.714:2	./.	./.	./.	./.	./.	./.
chr9	98638306	rs56108623	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,6:32:6:1.00:2
chr9	98691075	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:31:90:0.044:2	./.
chr9	98691137	rs2274654	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:1,37:32:38:0.974:2	0/1:2,20:32:22:0.909:2	./.	./.	./.	./.	./.	0/1:16,16:29:32:0.500:2	./.	./.	./.
chr9	98766861	rs12683634	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,66:32:66:1.00:2	0/1:0,34:31:34:1.00:2	./.	./.	./.	./.	./.	0/1:52,46:32:98:0.469:2	./.	./.	./.
chr9	98775459	rs10512243	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,31:30:31:1.00:2
chr9	98997810	rs2066479	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:24,34:32:58:0.586:2	0/1:16,16:32:32:0.500:2	./.	./.	0/1:1,58:32:59:0.983:2	./.	./.	./.	./.	./.	./.
chr9	99015183	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:32:49:0.082:2	./.	./.	./.	./.
chr9	99064331	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,4:29:98:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr9	99114385	rs370264773	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,63:31:115:0.548:2	./.	./.	./.	./.	./.
chr9	99130564	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:32:163:0.025:2
chr9	99150582	rs33944528	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,30:28:45:0.667:2	./.
chr9	99212630	rs144856432	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,20:28:29:0.690:2	./.	./.	./.	./.
chr9	99233284	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.	./.	./.
chr9	99250463	rs7030316	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:31:11:0.364:2	./.	./.	./.	0/1:44,18:31:62:0.290:2	0/1:51,33:30:84:0.393:2	./.	./.	0/1:39,39:30:78:0.500:2
chr9	99285691	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:33:74:0.054:2
chr9	99285693	rs7867765	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:31:79:0.051:2
chr9	99296333	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:186,6:33:192:0.031:2	0/1:144,8:32:152:0.053:2	./.	0/1:189,11:33:200:0.055:2	0/1:176,20:32:196:0.102:2	0/1:188,6:33:194:0.031:2	./.	./.	./.	0/1:188,9:33:197:0.046:2	0/1:166,29:32:195:0.149:2
chr9	99296354	rs199641449	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,5:30:176:0.028:2	0/1:186,6:28:194:0.031:2	0/1:191,4:32:195:0.021:2	./.	./.
chr9	99296357	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,17:34:169:0.101:2	./.	./.	./.	./.
chr9	99522502	rs142307404	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,9:32:29:0.310:2	./.
chr9	99525454	rs200741975	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:34:69:0.058:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	99525909	rs10978862	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,37:30:79:0.468:2	0/1:19,37:28:56:0.661:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	99581568	rs34763627	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,13:31:22:0.591:2	./.	./.	0/1:2,26:33:28:0.929:2	./.	0/1:15,12:33:27:0.444:2	0/1:14,18:33:32:0.563:2
chr9	99581811	rs4645656	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,14:30:36:0.389:2	0/1:18,14:31:32:0.438:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	99581916	rs7870376	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,50:34:127:0.394:2	0/1:49,31:33:80:0.388:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	99607221	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:30:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	99607230	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:29:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	99607241	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,4:33:16:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	99691351	rs144537164	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,23:27:109:0.211:2	0/1:72,19:27:91:0.209:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	99694023	rs201487837	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,26:33:90:0.289:2	0/1:26,23:32:49:0.469:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	99694087	rs200229358	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,40:27:86:0.465:2	0/1:38,20:28:58:0.345:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	99694501	rs200740362	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,7:31:24:0.292:2	./.	./.	./.	0/1:67,21:32:88:0.239:2	./.	0/1:102,57:32:160:0.358:2	./.	./.
chr9	99694689	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,4:30:95:0.042:2	./.	./.	0/1:114,4:30:118:0.034:2	./.	./.	./.
chr9	99697735	rs2257573	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,3:34:55:0.055:2	./.	./.	./.	./.
chr9	99699485	rs7866127	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,43:32:75:0.573:2	./.	0/1:42,39:32:82:0.481:2	0/1:1,84:31:85:0.988:2	./.
chr9	99699577	rs201094122	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,49:32:142:0.345:2
chr9	99700212	rs202040012	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,20:33:56:0.357:2	./.
chr9	99700710	rs201544487	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,24:32:197:0.122:2	./.	./.	./.	./.
chr9	99700713	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,7:30:49:0.143:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	99700909	rs201491123	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:88,24:28:112:0.214:2	0/1:50,21:32:71:0.296:2	./.	0/1:139,18:31:157:0.115:2	0/1:178,17:29:196:0.087:2	0/1:151,24:30:175:0.137:2	0/1:163,9:29:172:0.052:2	./.	0/1:168,8:31:176:0.045:2	./.	0/1:161,15:31:176:0.085:2
chr9	99700969	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,27:29:137:0.197:2	0/1:73,22:31:95:0.232:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	99701351	.	G	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,24:30:95:0.253:2	0/1:35,10:32:45:0.222:2	0/1:8,6:28:14:0.429:2	0/1:56,46:29:102:0.451:2	0/1:64,20:30:84:0.238:2	0/1:33,57:31:90:0.633:2	0/1:32,36:29:68:0.529:2	0/1:77,17:30:94:0.181:2	0/1:93,21:31:114:0.184:2	./.	0/1:87,31:30:118:0.263:2
chr9	99735214	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,25:32:69:0.362:2	./.	./.
chr9	99960736	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,28:33:199:0.141:2	0/1:175,22:33:197:0.112:2	./.	./.	./.
chr9	99960808	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,51:31:193:0.267:2	./.
chr9	99961131	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,24:32:195:0.124:2	./.
chr9	99961515	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:174,9:33:183:0.049:2	0/1:119,13:31:132:0.098:2	./.	./.	0/1:142,19:31:161:0.118:2	./.	0/1:157,13:31:170:0.076:2	0/1:178,20:30:198:0.101:2	./.	./.	0/1:189,9:31:198:0.045:2
chr9	99962210	rs7018753	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,25:32:58:0.431:2	./.
chr9	100070351	rs12683119	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,87:32:88:0.989:2	./.	0/1:70,57:32:127:0.449:2	./.	0/1:42,27:33:69:0.391:2	0/1:0,62:32:62:1.00:2
chr9	100085111	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:32:104:0.038:2	./.	./.
chr9	100087345	rs3747496	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,49:27:49:1.00:2	./.	0/1:20,27:28:47:0.574:2	./.	0/1:24,24:29:48:0.500:2	0/1:0,42:28:42:1.00:2
chr9	100105735	rs1947717	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,56:33:56:1.00:2	./.	0/1:24,35:32:59:0.593:2	./.	0/1:35,29:33:64:0.453:2	0/1:0,62:33:62:1.00:2
chr9	100105782	rs2061634	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,36:33:36:1.00:2	./.	0/1:14,18:32:32:0.563:2	./.	0/1:29,20:33:49:0.408:2	0/1:0,42:31:42:1.00:2
chr9	100124555	rs143570099	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,12:31:25:0.480:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	100128003	rs148165882	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,42:34:83:0.506:2	./.	./.
chr9	100128850	rs145284892	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,55:33:103:0.534:2	./.
chr9	100190780	rs1381532	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:40,36:33:76:0.474:2	0/1:35,19:33:54:0.352:2	./.	0/1:41,41:33:82:0.500:2	0/1:55,35:32:90:0.389:2	0/1:0,85:33:85:1.00:2	0/1:42,37:33:79:0.468:2	./.	0/1:44,40:33:84:0.476:2	0/1:38,22:33:60:0.367:2	./.
chr9	100193238	rs143579801	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,28:30:60:0.467:2	./.	./.	./.	./.	./.	./.	./.
chr9	100194406	rs2045732	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,32:32:69:0.464:2	0/1:31,15:32:46:0.326:2	0/1:9,8:33:17:0.471:2	0/1:67,42:33:109:0.385:2	0/1:49,24:33:73:0.329:2	0/1:0,75:32:75:1.00:2	0/1:36,22:33:58:0.379:2	./.	0/1:46,60:34:106:0.566:2	0/1:49,46:33:95:0.484:2	./.
chr9	100201551	rs7853578	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	100227275	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:33:118:0.034:2
chr9	100286543	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,4:30:98:0.041:2	./.	./.	./.	./.	./.	./.
chr9	100365265	rs41274254	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,8:31:14:0.571:2	./.	./.	./.	./.	./.
chr9	100388119	rs10817858	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,38:31:95:0.400:2	./.	./.	./.	./.	0/1:67,37:32:104:0.356:2
chr9	100388197	rs2773347	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:33:61:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,14:32:14:1.00:2	0/1:1,73:33:74:0.986:2	0/1:0,46:32:46:1.00:2	./.	0/1:35,31:32:66:0.470:2	0/1:31,43:33:74:0.581:2	0/1:0,87:33:87:1.00:2	0/1:33,24:33:57:0.421:2	0/1:61,64:32:125:0.512:2
chr9	100616583	rs3021523	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,25:25:26:0.962:2	0/1:0,24:26:24:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,57:26:57:1.00:2	0/1:23,11:26:34:0.324:2	0/1:0,35:26:36:1.00:2	0/1:14,15:26:29:0.517:2	0/1:0,41:26:41:1.00:2	0/1:0,35:28:35:1.00:2	0/1:1,37:27:38:0.974:2	0/1:0,25:25:25:1.00:2
chr9	100617375	rs7046645	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:32:42:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,4:25:4:1.00:2	0/1:0,57:31:57:1.00:2	0/1:29,38:31:67:0.567:2	0/1:0,41:32:41:1.00:2	0/1:25,23:32:48:0.479:2	0/1:0,55:31:55:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,50:31:50:1.00:2
chr9	100617433	rs7043516	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,21:28:56:0.375:2	./.	0/1:0,26:29:26:1.00:2	./.
chr9	100617479	rs1443434	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:31:51:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,2:30:2:1.00:2	0/1:0,68:32:68:1.00:2	0/1:28,23:31:51:0.451:2	0/1:0,75:31:75:1.00:2	0/1:30,29:32:59:0.492:2	0/1:29,42:32:71:0.592:2	0/1:0,71:33:71:1.00:2	./.	0/1:0,52:32:52:1.00:2
chr9	100617583	rs1443435	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,101:32:102:0.990:2	0/1:1,61:32:62:0.984:2	0/1:0,16:34:16:1.00:2	0/1:0,131:32:132:1.00:2	0/1:59,60:32:119:0.504:2	0/1:0,152:32:152:1.00:2	0/1:77,43:32:120:0.358:2	0/1:79,95:32:174:0.546:2	0/1:1,115:32:116:0.991:2	./.	0/1:0,119:32:119:1.00:2
chr9	100618111	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:33:51:0.078:2	./.	./.	./.
chr9	100618578	rs76305281	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,16:32:40:0.400:2	./.
chr9	100618660	rs10984009	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,14:30:25:0.560:2	./.	0/1:17,5:32:22:0.227:2	./.
chr9	100672338	rs2282192	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:39,45:31:84:0.536:2	0/1:32,17:31:49:0.347:2	./.	./.	0/1:28,29:31:57:0.509:2	0/1:41,28:30:70:0.406:2	0/1:0,72:31:72:1.00:2	./.	0/1:43,41:32:84:0.488:2	./.	0/1:45,45:31:90:0.500:2
chr9	100675816	rs1127703	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:30:5:1.00:2	0/1:1,40:30:41:0.976:2	./.	0/1:10,18:31:28:0.643:2	./.	0/1:18,10:31:28:0.357:2	./.	0/1:14,15:30:29:0.517:2	0/1:18,19:31:37:0.514:2
chr9	100684719	rs3183928	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:33:7:1.00:2	0/1:0,25:32:25:1.00:2	./.	0/1:17,12:31:29:0.414:2	./.	0/1:0,33:30:33:1.00:2	./.	0/1:0,15:32:15:1.00:2	0/1:10,9:30:19:0.474:2
chr9	100684757	rs3183927	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,13:32:13:1.00:2	./.	0/1:11,8:32:19:0.421:2	./.	0/1:0,14:32:14:1.00:2	./.	0/1:0,6:32:6:1.00:2	0/1:4,4:26:8:0.500:2
chr9	100689693	rs1059003	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,44:30:95:0.463:2	./.	0/1:53,32:29:85:0.376:2	./.
chr9	100692330	rs35223978	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,67:32:131:0.511:2	./.
chr9	100698466	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,5:29:189:0.026:2
chr9	100745902	rs3739672	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,35:32:70:0.500:2	./.	0/1:40,21:32:63:0.344:2	0/1:39,17:32:56:0.304:2	0/1:35,39:32:74:0.527:2	0/1:41,30:30:73:0.423:2	0/1:33,21:32:54:0.389:2	0/1:46,27:31:73:0.370:2
chr9	100773640	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,6:32:195:0.031:2	./.	./.	./.	./.
chr9	100819102	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,4:30:40:0.100:2	./.	./.	./.	./.	./.	./.
chr9	100819192	rs3739670	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:18,20:31:38:0.526:2	0/1:14,11:31:25:0.440:2	./.	0/1:37,23:31:60:0.383:2	./.	./.	0/1:38,34:31:72:0.472:2	0/1:39,49:31:88:0.557:2	0/1:20,54:32:74:0.730:2	0/1:27,32:31:59:0.542:2	0/1:22,12:32:34:0.353:2
chr9	100823084	rs13049	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:4,86:33:90:0.956:2	0/1:0,61:32:61:1.00:2	0/1:9,6:32:15:0.400:2	./.	0/1:59,42:32:101:0.416:2	0/1:61,62:32:123:0.504:2	0/1:0,130:32:130:1.00:2	0/1:1,140:32:141:0.993:2	0/1:0,143:33:143:1.00:2	0/1:0,114:32:114:1.00:2	0/1:78,70:33:148:0.473:2
chr9	100823135	rs1058446	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:48,48:32:96:0.500:2	0/1:26,29:33:55:0.527:2	0/1:10,6:32:16:0.375:2	./.	./.	0/1:56,57:32:113:0.504:2	0/1:72,48:32:120:0.400:2	0/1:64,59:32:123:0.480:2	./.	0/1:34,62:32:96:0.646:2	./.
chr9	100843417	rs4237190	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:3,46:33:49:0.939:2	0/1:1,25:32:26:0.962:2	0/1:4,6:30:10:0.600:2	./.	0/1:47,37:32:84:0.440:2	0/1:58,33:32:91:0.363:2	0/1:4,81:32:85:0.953:2	0/1:0,70:31:70:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,41:32:41:1.00:2	0/1:22,24:33:46:0.522:2
chr9	100862339	rs35830621	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,38:33:77:0.494:2	./.
chr9	100895443	rs735111	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,74:32:176:0.420:2	./.	./.
chr9	100971348	rs3739666	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,25:30:67:0.373:2	0/1:29,16:30:45:0.356:2	0/1:1,8:31:9:0.889:2	0/1:0,78:30:78:1.00:2	0/1:1,109:29:110:0.991:2	./.	0/1:74,59:30:133:0.444:2	0/1:60,63:30:123:0.512:2	./.	0/1:38,29:29:67:0.433:2	0/1:42,24:31:66:0.364:2
chr9	100975393	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,34:31:73:0.466:2	./.	./.	./.
chr9	100991430	rs1573025	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,38:31:79:0.481:2	0/1:49,44:31:93:0.473:2	./.	./.	./.
chr9	100995721	rs879369	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:31,32:29:63:0.508:2	0/1:31,16:28:47:0.340:2	./.	./.	0/1:46,41:30:87:0.471:2	./.	0/1:56,44:28:100:0.440:2	0/1:55,31:26:86:0.360:2	./.	./.	0/1:41,32:30:73:0.438:2
chr9	100995758	rs879368	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,70:30:143:0.490:2	0/1:84,59:30:143:0.413:2	./.	./.	0/1:57,47:30:104:0.452:2
chr9	101056122	rs10985765	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,25:33:54:0.463:2	0/1:45,41:33:86:0.477:2	./.	./.	./.
chr9	101068562	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:34:197:0.020:2	./.	./.
chr9	101068580	rs2304389	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:88,63:33:151:0.417:2	0/1:58,44:32:102:0.431:2	./.	./.	./.	./.	0/1:95,99:32:194:0.510:2	0/1:99,91:33:190:0.479:2	./.	./.	./.
chr9	101073380	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,13:34:68:0.191:2	./.
chr9	101340301	rs2808536	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:34,25:27:59:0.424:2	0/1:14,20:28:34:0.588:2	./.	./.	0/1:1,63:29:64:0.984:2	0/1:0,44:29:44:1.00:2	0/1:46,41:29:87:0.471:2	0/1:36,34:29:70:0.486:2	0/1:0,79:30:79:1.00:2	0/1:0,59:29:60:1.00:2	0/1:0,55:27:55:1.00:2
chr9	101340316	rs3750344	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,29:29:69:0.420:2	0/1:19,36:30:55:0.655:2	./.
chr9	101533220	rs6415847	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:31:48:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,72:31:72:1.00:2	0/1:2,49:30:52:0.961:2	0/1:0,61:30:61:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,55:30:55:1.00:2	0/1:1,69:31:70:0.986:2
chr9	101558444	rs76903503	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.
chr9	101570336	rs1137654	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,29:30:48:0.604:2	./.	./.	./.	./.	./.	./.	./.
chr9	101594103	rs41306504	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,52:31:131:0.397:2	./.	./.	./.	./.	./.
chr9	101594229	rs145236923	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,17:30:31:0.548:2	./.	./.	./.	./.	./.
chr9	101611335	rs2273846	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,31:28:80:0.388:2	./.	./.	./.	./.	./.
chr9	101748234	rs2075662	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:17,20:31:37:0.541:2	0/1:14,19:31:33:0.576:2	./.	./.	./.	./.	./.	0/1:53,36:31:89:0.404:2	./.	./.	./.
chr9	101748356	rs2075663	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,15:29:17:0.882:2	0/1:0,18:30:18:1.00:2	0/1:0,6:30:6:1.00:2	0/1:17,18:30:35:0.514:2	0/1:1,29:29:30:0.967:2	0/1:15,21:29:36:0.583:2	./.	0/1:20,29:29:49:0.592:2	./.	0/1:25,19:29:44:0.432:2	0/1:20,23:30:43:0.535:2
chr9	101749581	rs80261930	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,27:32:50:0.540:2	./.	./.	./.	./.	./.	./.	./.
chr9	101778272	rs35250850	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:25:11:0.500:2	./.	0/1:43,33:27:76:0.434:2	./.	./.	./.	./.	./.	./.
chr9	101778346	rs35529307	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,30:30:50:0.600:2	./.	./.	./.	0/1:20,26:30:46:0.565:2	./.	./.	./.
chr9	101804329	rs7854112	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:11,13:31:25:0.542:2	0/1:3,6:33:9:0.667:2	./.	0/1:8,14:32:22:0.636:2	./.	0/1:22,10:32:33:0.313:2	./.	0/1:16,9:32:25:0.360:2	./.	./.	0/1:22,17:30:39:0.436:2
chr9	101822220	rs4480177	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,52:33:105:0.495:2	0/1:50,44:32:94:0.468:2	0/1:13,5:32:18:0.278:2	0/1:44,52:32:96:0.542:2	./.	0/1:50,46:32:96:0.479:2	./.	0/1:37,36:32:73:0.493:2	./.	./.	0/1:71,59:32:130:0.454:2
chr9	101831995	rs10519	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:31:14:0.571:2	./.	./.	0/1:25,33:30:58:0.569:2	./.	./.	./.	./.	./.
chr9	101980367	rs35626507	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,89:28:90:0.989:2	./.	./.	./.	./.
chr9	101984648	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,3:36:106:0.028:2	./.	./.	./.	./.
chr9	102067769	rs143577538	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,22:29:43:0.512:2	./.	./.	./.	./.	./.
chr9	102067887	rs395420	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:33:26:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,23:32:23:1.00:2	0/1:2,29:31:31:0.935:2	0/1:0,14:31:14:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,18:34:18:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,41:33:41:1.00:2
chr9	102068058	rs184437	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,59:32:138:0.428:2	0/1:80,71:33:151:0.470:2	0/1:89,77:33:166:0.464:2	0/1:0,145:34:145:1.00:2	./.	./.
chr9	102068344	rs790287	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,37:31:39:0.949:2	0/1:0,21:33:21:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,36:33:36:1.00:2	0/1:0,44:32:44:1.00:2
chr9	102068521	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,11:30:30:0.367:2	./.	./.	./.	./.	./.	./.
chr9	102068770	rs7871150	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:31:11:0.273:2	./.	./.	./.	./.	./.	./.	./.
chr9	102068832	rs170462	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:32:22:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,21:32:21:1.00:2
chr9	102595069	rs41274654	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,38:31:88:0.432:2	0/1:49,29:30:78:0.372:2	0/1:53,24:31:77:0.312:2	./.	0/1:43,38:31:81:0.469:2	0/1:0,83:32:83:1.00:2	./.	0/1:53,44:32:97:0.454:2
chr9	102595685	rs10988904	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,9:31:20:0.450:2	0/1:63,62:32:125:0.496:2	0/1:47,46:31:93:0.495:2	0/1:79,50:31:129:0.388:2	0/1:79,54:32:133:0.406:2	./.	./.	0/1:65,53:33:118:0.449:2	./.
chr9	102677589	rs41305451	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:18,24:33:42:0.571:2	0/1:5,14:33:19:0.737:2	./.	./.	./.	./.	./.	./.	./.	0/1:10,7:33:17:0.412:2	./.
chr9	102730754	rs200852564	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,7:13:23:0.318:2	./.	./.	./.	./.	./.	0/1:18,7:19:25:0.280:2
chr9	102730769	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,7:13:23:0.304:2	./.	./.	./.	./.	./.	./.	./.
chr9	102820161	rs202156757	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,61:32:122:0.500:2
chr9	102866870	rs145303373	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,16:33:37:0.432:2	./.
chr9	103008977	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:31:177:0.023:2	./.	./.	./.	./.
chr9	103054941	rs76868679	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,12:30:43:0.279:2	./.	./.	./.	./.	./.
chr9	103054951	rs2787374	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,29:30:64:0.453:2	0/1:17,11:31:28:0.393:2	0/1:2,4:33:6:0.667:2	0/1:29,17:31:47:0.370:2	./.	0/1:1,42:32:43:0.977:2	./.	0/1:40,27:32:67:0.403:2	0/1:0,50:32:50:1.00:2	0/1:26,15:32:41:0.366:2	0/1:26,14:31:40:0.350:2
chr9	103064530	rs7472	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,36:32:69:0.522:2	0/1:15,14:31:29:0.483:2	./.	0/1:42,34:31:76:0.447:2	0/1:41,20:30:61:0.328:2	./.	0/1:0,68:31:68:1.00:2	0/1:45,36:31:81:0.444:2	./.	0/1:31,22:31:53:0.415:2	0/1:45,45:31:91:0.500:2
chr9	103065917	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:33:199:0.020:2
chr9	103204577	rs35438121	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,8:32:16:0.500:2	0/1:8,6:31:14:0.429:2	./.	./.	0/1:13,12:32:25:0.480:2	0/1:0,31:32:31:1.00:2	./.	0/1:21,21:32:42:0.500:2	0/1:9,10:34:19:0.526:2	./.	./.
chr9	103213081	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:141,4:31:145:0.028:2	./.	./.	./.	./.	./.	./.
chr9	103235853	rs77849433	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:33:4:0.750:2	./.	./.	0/1:1,4:30:5:0.800:2	0/1:1,5:32:6:0.833:2	./.	0/1:1,10:25:11:0.909:2	./.	./.	./.
chr9	103348215	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:32:80:0.050:2	./.	./.
chr9	103348634	rs2780956	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,6:24:13:0.462:2	./.	0/1:0,14:29:14:1.00:2	0/1:10,8:30:18:0.444:2	0/1:13,7:33:20:0.350:2	./.	0/1:0,14:32:14:1.00:2
chr9	103947810	rs41296085	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,77:32:164:0.470:2	./.	./.	0/1:49,55:33:104:0.529:2	./.	./.	./.	./.
chr9	104032338	rs7847596	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,56:33:119:0.475:2	./.	./.
chr9	104079706	rs16920154	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,19:30:27:0.704:2	./.	./.	./.	./.
chr9	104124952	rs75971020	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,10:18:143:0.070:2
chr9	104130469	rs41281027	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:31,20:31:51:0.392:2	0/1:10,9:32:19:0.474:2	./.	./.	0/1:12,15:33:27:0.556:2	0/1:24,24:32:48:0.500:2	./.	./.	0/1:29,25:33:54:0.463:2	./.	./.
chr9	104133628	rs1572983	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:31:3:1.00:2	0/1:0,24:32:24:1.00:2	0/1:16,10:32:26:0.385:2	0/1:19,18:31:37:0.486:2	0/1:0,26:32:26:1.00:2	0/1:16,32:32:48:0.667:2	0/1:21,24:33:45:0.533:2	0/1:0,19:33:19:1.00:2	./.
chr9	104152790	rs17853010	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,11:29:46:0.239:2	./.	./.	./.	./.
chr9	104152846	rs8131	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,18:31:65:0.277:2	./.	./.	./.	./.
chr9	104170350	rs1047968	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:29:11:0.273:2	./.	./.	./.	./.	./.	./.	0/1:34,25:30:59:0.424:2	0/1:31,56:30:87:0.644:2
chr9	104170372	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:31:78:0.051:2	./.	./.	./.	./.	./.
chr9	104171523	rs45455902	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:33:5:0.600:2	./.	./.	./.	./.	./.	./.	0/1:12,17:33:29:0.586:2	0/1:20,11:33:31:0.355:2
chr9	104171856	rs17772514	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,8:31:19:0.421:2	./.	./.	./.	./.	./.	./.	0/1:54,31:31:85:0.365:2	0/1:58,35:32:93:0.376:2
chr9	104189856	rs1800546	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,39:32:86:0.453:2	./.	./.	./.	./.
chr9	104238730	rs17187712	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:59,59:32:118:0.500:2	0/1:37,31:30:68:0.456:2	./.	./.	0/1:69,74:31:143:0.517:2	./.	./.	./.	0/1:87,95:32:182:0.522:2	0/1:84,75:31:159:0.472:2	./.
chr9	104239321	rs11546567	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:34,32:32:66:0.485:2	0/1:27,12:30:39:0.308:2	0/1:2,4:31:6:0.667:2	./.	./.	./.	./.	./.	./.	0/1:24,31:32:55:0.564:2	./.
chr9	104302625	rs16920477	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,60:32:110:0.545:2	./.	./.	./.	./.	./.
chr9	104309445	rs2273976	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,3:29:10:0.300:2	0/1:5,126:30:131:0.962:2	./.	./.	./.	0/1:74,31:29:105:0.295:2	0/1:80,66:31:146:0.452:2	./.	./.
chr9	104314511	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:31:110:0.036:2	./.	./.	./.	./.	./.
chr9	104324545	rs10521057	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,34:32:88:0.386:2	./.	./.	./.	0/1:69,48:32:117:0.410:2
chr9	104335682	rs3739722	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,20:32:30:0.667:2	./.	0/1:73,105:31:178:0.590:2	./.	0/1:188,7:33:195:0.036:2	./.	./.	./.	./.
chr9	104335690	rs16920497	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,86:31:188:0.457:2	./.	./.	./.	./.	./.
chr9	104341613	rs79786742	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,33:27:75:0.440:2	./.
chr9	104356952	rs143889374	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,29:31:63:0.460:2	0/1:30,30:31:60:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	104385711	rs10989563	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,47:32:83:0.566:2
chr9	104385712	rs10989564	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,8:30:14:0.571:2	0/1:1,64:30:65:0.985:2	0/1:37,39:30:76:0.513:2	./.	0/1:0,68:30:69:1.00:2	0/1:40,37:29:77:0.481:2	0/1:50,55:30:105:0.524:2	0/1:42,30:30:72:0.417:2	0/1:0,76:31:77:1.00:2
chr9	104432873	rs942142	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:34:5:0.600:2	0/1:2,63:33:65:0.969:2	./.	0/1:47,23:32:70:0.329:2	0/1:39,43:33:82:0.524:2	0/1:42,37:32:79:0.468:2	./.	./.	0/1:39,37:30:76:0.487:2
chr9	104433034	rs10512285	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,10:32:14:0.714:2	0/1:1,132:32:133:0.992:2	./.	0/1:66,61:32:127:0.480:2	0/1:62,65:31:127:0.512:2	0/1:60,57:32:119:0.487:2	./.	./.	0/1:66,72:32:138:0.522:2
chr9	104433179	rs373293493	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:33:179:0.022:2	./.	./.	./.	./.
chr9	104433235	rs10989589	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,12:30:23:0.522:2	0/1:1,170:30:171:0.994:2	./.	0/1:87,78:30:165:0.473:2	0/1:76,64:30:140:0.457:2	0/1:79,83:30:162:0.512:2	./.	./.	0/1:110,80:30:190:0.421:2
chr9	104433347	rs13284303	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,62:31:62:1.00:2	./.	0/1:24,35:31:59:0.593:2	0/1:33,23:31:56:0.411:2	0/1:27,42:30:69:0.609:2	./.	./.	./.
chr9	104449063	rs2506354	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,75:31:77:0.987:2	0/1:0,58:31:58:1.00:2	0/1:6,9:31:15:0.600:2	./.	0/1:69,61:31:130:0.469:2	0/1:58,49:30:108:0.458:2	0/1:74,53:31:127:0.417:2	0/1:70,59:31:130:0.457:2	0/1:0,110:32:111:1.00:2	0/1:60,27:31:87:0.310:2	0/1:0,91:31:91:1.00:2
chr9	104449098	rs10989591	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,24:29:70:0.343:2	./.	./.	./.	0/1:0,56:31:56:1.00:2
chr9	104449209	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,35:32:77:0.455:2
chr9	104449294	rs33945236	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,5:30:16:0.313:2	0/1:2,109:29:111:0.982:2	./.	0/1:90,69:30:159:0.434:2	0/1:86,44:30:131:0.338:2	0/1:110,80:29:190:0.421:2	./.	./.	./.
chr9	104499575	rs1337677	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:31:56:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,7:31:7:1.00:2	0/1:1,69:31:70:0.986:2	0/1:56,47:30:103:0.456:2	0/1:0,67:31:67:1.00:2	0/1:0,90:31:90:1.00:2	0/1:0,111:30:111:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,46:29:46:1.00:2
chr9	105340615	rs41301539	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,41:33:98:0.418:2	./.	./.
chr9	105405415	rs10820216	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:41,24:32:65:0.369:2	0/1:30,26:31:57:0.464:2	0/1:3,5:31:8:0.625:2	./.	./.	0/1:1,71:31:72:0.986:2	./.	0/1:48,33:32:81:0.407:2	./.	0/1:36,40:31:76:0.526:2	0/1:44,32:33:76:0.421:2
chr9	105405434	rs10990214	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:39,22:33:61:0.361:2	0/1:28,23:32:51:0.451:2	0/1:3,4:32:7:0.571:2	./.	./.	0/1:31,28:32:59:0.475:2	./.	./.	./.	./.	./.
chr9	105763912	rs10820335	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,39:33:93:0.419:2	./.	0/1:49,28:32:77:0.364:2	0/1:28,16:29:44:0.364:2	0/1:33,15:32:48:0.313:2	./.	0/1:40,27:33:67:0.403:2	0/1:62,34:32:96:0.354:2
chr9	106857737	rs147385187	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,56:31:131:0.427:2	./.	./.	./.	./.	./.
chr9	106860779	rs61755310	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,20:33:49:0.408:2	0/1:22,16:32:38:0.421:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	106860846	rs377071933	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:30:111:0.036:2	./.	./.	./.	./.	./.
chr9	106896809	rs7872034	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,31:32:80:0.388:2	0/1:21,22:32:43:0.512:2	0/1:3,3:32:6:0.500:2	0/1:2,89:32:91:0.978:2	0/1:36,37:31:73:0.507:2	0/1:41,29:30:70:0.414:2	0/1:0,70:32:70:1.00:2	0/1:0,84:31:84:1.00:2	0/1:0,73:33:73:1.00:2	./.	./.
chr9	107266596	rs7049042	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,89:33:90:0.989:2	0/1:0,43:32:43:1.00:2	0/1:0,8:33:8:1.00:2	0/1:21,34:32:55:0.618:2	0/1:0,56:32:56:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,61:33:61:1.00:2	0/1:31,36:32:67:0.537:2	0/1:48,43:34:91:0.473:2	./.	0/1:43,59:33:102:0.578:2
chr9	107266694	rs61748307	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,63:32:151:0.417:2	0/1:44,35:32:79:0.443:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	107266774	rs1949755	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,122:30:122:1.00:2	0/1:0,79:30:79:1.00:2	0/1:13,11:30:24:0.458:2	0/1:72,80:30:152:0.526:2	0/1:1,125:29:126:0.992:2	0/1:2,122:29:124:0.984:2	0/1:1,100:30:101:0.990:2	0/1:97,74:30:171:0.433:2	0/1:76,60:30:136:0.441:2	./.	0/1:63,66:29:129:0.512:2
chr9	107266833	rs79177442	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,35:30:78:0.449:2	./.	./.	./.	./.	./.	./.
chr9	107266844	rs1403812	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,98:31:98:1.00:2	0/1:0,69:31:69:1.00:2	0/1:5,8:31:13:0.615:2	0/1:62,50:32:112:0.446:2	0/1:1,78:31:79:0.987:2	0/1:0,112:32:112:1.00:2	0/1:0,95:31:95:1.00:2	0/1:94,53:32:147:0.361:2	0/1:54,47:32:101:0.465:2	./.	0/1:54,54:31:108:0.500:2
chr9	107266943	rs1403811	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:31:92:1.00:2	0/1:0,46:31:46:1.00:2	0/1:7,5:29:12:0.417:2	0/1:62,46:30:108:0.426:2	0/1:0,83:30:83:1.00:2	0/1:1,84:30:85:0.988:2	0/1:0,74:31:74:1.00:2	0/1:49,47:30:96:0.490:2	0/1:53,49:31:102:0.480:2	./.	0/1:41,45:31:86:0.523:2
chr9	107267304	rs7030820	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,43:32:69:0.623:2	0/1:23,28:31:51:0.549:2	./.	0/1:30,33:32:64:0.524:2	0/1:0,56:32:56:1.00:2	0/1:50,49:31:99:0.495:2	0/1:2,85:32:87:0.977:2	0/1:58,57:32:115:0.496:2	0/1:32,46:33:78:0.590:2	./.	0/1:58,67:31:125:0.536:2
chr9	107267352	rs7847413	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,40:32:77:0.519:2	./.	./.	./.	./.	./.
chr9	107289212	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:33:67:0.060:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	107298285	rs41312212	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	107298444	rs41305445	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,20:30:42:0.476:2	./.	./.	0/1:22,20:33:42:0.476:2	./.	./.
chr9	107299001	rs41304943	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,31:31:64:0.484:2	./.	./.	0/1:28,38:32:66:0.576:2	./.	./.
chr9	107331504	rs7026705	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:31:6:1.00:2	./.	./.	0/1:0,43:30:43:1.00:2	./.	0/1:0,41:31:41:1.00:2	./.	0/1:6,19:31:25:0.760:2	0/1:25,19:32:44:0.432:2
chr9	107331727	rs78431564	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,48:33:120:0.400:2	./.	./.	./.	./.	./.	./.	./.
chr9	107360783	rs372091946	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,5:31:109:0.046:2	./.	0/1:65,7:31:72:0.097:2	0/1:104,4:32:108:0.037:2	./.	./.
chr9	107360826	rs1851725	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,8:28:21:0.381:2	./.	./.	./.	./.	0/1:77,50:29:127:0.394:2	./.	./.	0/1:93,76:28:169:0.450:2
chr9	107360851	rs1523678	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,8:30:20:0.400:2	./.	./.	./.	./.	0/1:84,66:30:150:0.440:2	./.	./.	0/1:95,86:30:181:0.475:2
chr9	107360922	rs1851724	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,25:29:25:1.00:2	./.	./.	0/1:3,179:30:182:0.984:2	0/1:189,5:28:194:0.026:2	0/1:2,175:30:177:0.989:2	./.	0/1:92,79:30:171:0.462:2	0/1:97,73:30:170:0.429:2
chr9	107361129	rs4117966	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,21:30:36:0.583:2	./.	./.	./.	./.	0/1:112,76:31:188:0.404:2	./.	./.	0/1:91,96:31:187:0.513:2
chr9	107361149	rs77631815	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,5:30:191:0.026:2	./.	./.	0/1:177,12:33:189:0.063:2
chr9	107361217	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,7:32:172:0.041:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	107361312	rs1851723	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,12:33:22:0.545:2	./.	./.	0/1:9,179:33:189:0.952:2	./.	0/1:75,119:32:194:0.613:2	./.	0/1:104,84:32:188:0.447:2	./.
chr9	107361346	rs2417534	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,8:29:24:0.333:2	./.	./.	./.	./.	0/1:131,57:32:188:0.303:2	./.	./.	0/1:137,54:31:191:0.283:2
chr9	107361385	rs114970602	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,19:28:199:0.095:2	0/1:176,15:29:192:0.079:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	107361398	rs201642516	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,6:29:137:0.044:2	./.	./.	./.
chr9	107361439	rs4629933	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,7:31:24:0.292:2	./.	./.	0/1:64,35:31:99:0.354:2	./.	0/1:80,19:31:99:0.192:2	./.	0/1:135,15:31:150:0.100:2	0/1:143,10:32:153:0.065:2
chr9	107361452	rs199665292	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,6:30:60:0.100:2	./.	./.	./.
chr9	107361460	rs116283639	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,10:33:33:0.303:2	./.	./.	0/1:62,54:32:116:0.466:2	./.	0/1:81,55:32:136:0.404:2	./.	0/1:135,24:32:159:0.151:2	0/1:134,29:32:163:0.178:2
chr9	107361490	rs7042502	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,25:31:59:0.424:2	./.	./.	0/1:88,63:31:151:0.417:2	./.	0/1:107,64:32:171:0.374:2	./.	0/1:147,31:32:178:0.174:2	0/1:141,39:33:180:0.217:2
chr9	107361599	rs6479260	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,22:32:47:0.478:2	./.	./.	./.	./.	0/1:140,53:32:193:0.275:2	./.	./.	0/1:144,50:33:194:0.258:2
chr9	107361627	rs200876197	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,7:32:38:0.184:2	./.	./.	./.	./.	0/1:141,39:31:180:0.217:2	./.	./.	0/1:167,27:32:194:0.139:2
chr9	107361629	rs79218331	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,8:29:180:0.044:2	./.	./.	./.	./.	./.
chr9	107361642	rs1851722	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,88:31:150:0.587:2	./.	0/1:122,44:32:166:0.265:2	./.	0/1:114,44:32:158:0.278:2	./.
chr9	107367008	rs10156474	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,9:30:22:0.409:2	./.	./.	./.	0/1:156,4:31:160:0.025:2	0/1:103,87:31:190:0.458:2	./.	./.	0/1:109,77:30:186:0.414:2
chr9	107367066	rs78619003	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,75:32:187:0.401:2
chr9	107367132	rs10820679	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,6:31:17:0.353:2	./.	./.	0/1:1,137:30:138:0.993:2	0/1:149,4:31:153:0.026:2	0/1:82,68:31:150:0.453:2	./.	0/1:58,65:31:123:0.528:2	./.
chr9	107367431	rs1851716	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,6:32:29:0.207:2	./.	./.	./.	./.	0/1:143,55:31:200:0.278:2	./.	./.	0/1:133,65:32:198:0.328:2
chr9	107367526	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:34:198:0.020:2	./.	./.	./.	./.	./.
chr9	107367545	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,92:32:187:0.495:2	./.	./.	./.	./.	./.	./.	./.
chr9	107367560	rs141081999	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,53:29:191:0.279:2	0/1:117,47:29:164:0.287:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	107367599	rs372983641	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,10:32:84:0.119:2	./.	./.	./.	./.	0/1:175,23:32:198:0.116:2	./.	./.	0/1:177,16:32:194:0.083:2
chr9	107367612	rs55706329	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,20:31:76:0.263:2	./.	./.	./.	./.	0/1:120,62:30:182:0.341:2	./.	./.	0/1:106,83:30:189:0.439:2
chr9	107367629	rs200685389	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,6:31:64:0.094:2	./.	./.	./.	./.	0/1:164,8:33:172:0.047:2	./.	./.	0/1:170,10:33:180:0.056:2
chr9	107367638	.	T	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,4:30:59:0.068:2	./.	./.	./.	./.	0/1:157,6:30:164:0.037:2	./.	./.	0/1:161,8:31:169:0.047:2
chr9	107367666	rs144815315	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,6:31:104:0.058:2	./.	./.	./.
chr9	107367674	rs41312234	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,4:32:62:0.065:2	./.	./.	0/1:136,31:31:168:0.186:2	./.	0/1:131,46:31:177:0.260:2	./.	0/1:176,11:30:187:0.059:2	0/1:159,16:32:175:0.091:2
chr9	107367704	rs201900693	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,6:32:64:0.094:2	./.	./.	0/1:125,53:31:178:0.298:2	./.	0/1:123,59:32:182:0.324:2	./.	0/1:166,23:32:189:0.122:2	0/1:157,23:33:180:0.128:2
chr9	107367813	rs28538722	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,8:34:37:0.216:2	./.	./.	./.	./.	0/1:157,37:32:194:0.191:2	./.	./.	0/1:165,33:32:198:0.167:2
chr9	107367841	rs10991326	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,10:31:29:0.345:2	./.	./.	./.	./.	0/1:141,53:32:194:0.273:2	./.	./.	0/1:124,66:32:191:0.347:2
chr9	107367856	rs201895935	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,4:31:27:0.148:2	./.	./.	0/1:122,34:31:156:0.218:2	./.	0/1:153,20:30:173:0.116:2	./.	0/1:130,16:31:146:0.110:2	./.
chr9	107379676	rs185432775	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,12:27:172:0.070:2	./.	./.	./.	0/1:167,9:29:176:0.051:2	./.
chr9	107379895	rs10761054	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,4:31:18:0.222:2	./.	./.	0/1:2,133:29:135:0.985:2	./.	0/1:95,91:30:186:0.489:2	./.	0/1:63,64:31:127:0.504:2	./.
chr9	107380177	rs1813819	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,7:29:48:0.146:2	./.	./.	./.	./.	0/1:123,64:28:187:0.342:2	./.	./.	0/1:116,74:29:190:0.389:2
chr9	107380206	rs76976154	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:35:193:0.021:2
chr9	107380215	rs993658	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,26:31:70:0.371:2	./.	./.	./.	./.	0/1:108,76:31:184:0.413:2	./.	./.	0/1:101,87:31:188:0.463:2
chr9	107380243	rs75248888	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,7:29:192:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	107380251	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,5:27:99:0.051:2	./.	./.	0/1:164,19:31:183:0.104:2	./.	0/1:161,29:31:190:0.153:2	./.	0/1:187,8:32:195:0.041:2	0/1:188,5:30:193:0.026:2
chr9	107380281	.	A	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,5:30:109:0.046:2	./.	./.	0/1:154,31:32:185:0.168:2	./.	0/1:154,36:32:190:0.189:2	./.	0/1:185,11:32:196:0.056:2	0/1:185,8:33:193:0.041:2
chr9	107380371	rs150686997	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,6:33:172:0.035:2	./.
chr9	107380396	rs36091517	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,6:33:17:0.353:2	./.	./.	0/1:3,134:32:137:0.978:2	0/1:107,4:33:111:0.036:2	0/1:70,75:32:145:0.517:2	./.	0/1:65,76:33:141:0.539:2	./.
chr9	107380414	rs2900373	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:31:12:0.667:2	./.	./.	./.	./.	0/1:77,61:30:138:0.442:2	./.	./.	0/1:88,78:31:166:0.470:2
chr9	107380420	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:32:81:0.049:2	./.	./.	./.	./.
chr9	107456763	rs10991359	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.	0/1:24,36:32:60:0.600:2	./.	0/1:24,18:32:42:0.429:2	0/1:40,28:33:68:0.412:2	0/1:20,23:34:43:0.535:2	./.
chr9	107456892	rs13294411	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,32:29:74:0.432:2	./.	./.	./.	./.	./.	./.	./.
chr9	107456933	rs12347076	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:44,37:31:81:0.457:2	0/1:19,22:31:41:0.537:2	0/1:8,5:31:13:0.385:2	./.	./.	./.	./.	0/1:41,41:30:82:0.500:2	./.	./.	0/1:74,56:31:130:0.431:2
chr9	107457210	rs143393235	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:195,4:33:199:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr9	107457275	rs10820709	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:30,15:32:45:0.333:2	0/1:107,89:32:196:0.454:2	./.	0/1:98,97:32:195:0.497:2	./.	0/1:105,92:32:198:0.467:2	0/1:106,91:33:197:0.462:2	0/1:88,102:32:190:0.537:2	./.
chr9	107457532	rs10761073	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,66:32:148:0.446:2	0/1:42,54:32:96:0.563:2	0/1:0,21:31:21:1.00:2	0/1:95,69:31:164:0.421:2	./.	0/1:85,71:31:156:0.455:2	./.	0/1:0,130:32:130:1.00:2	0/1:88,76:33:164:0.463:2	0/1:73,60:32:133:0.451:2	0/1:83,83:32:166:0.500:2
chr9	107457725	rs12338899	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:24,18:30:42:0.429:2	0/1:17,12:32:29:0.414:2	./.	./.	./.	./.	./.	0/1:13,12:29:25:0.480:2	./.	./.	0/1:26,34:31:60:0.567:2
chr9	107510145	rs3753024	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,3:27:3:1.00:2	0/1:0,3:26:3:1.00:2	0/1:0,2:27:2:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,10:26:10:1.00:2	0/1:4,3:23:7:0.429:2	0/1:0,5:27:5:1.00:2	./.	0/1:2,4:29:6:0.667:2	./.	./.
chr9	107515214	rs2274870	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,103:33:104:0.990:2	0/1:0,54:32:54:1.00:2	./.	0/1:0,114:32:114:1.00:2	0/1:1,80:31:81:0.988:2	0/1:0,95:32:95:1.00:2	0/1:0,60:32:60:1.00:2	./.	0/1:73,53:33:126:0.421:2	0/1:48,54:33:102:0.529:2	./.
chr9	107531152	rs10761084	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:34:6:0.667:2	./.	./.	./.	./.	0/1:34,24:33:58:0.414:2	./.	./.	0/1:45,54:32:99:0.545:2
chr9	107533175	rs3739741	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,9:33:23:0.391:2	./.	./.	./.	./.	0/1:56,48:32:104:0.462:2	./.	./.	0/1:79,66:32:145:0.455:2
chr9	107535108	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,33:32:91:0.363:2	./.	./.
chr9	107535303	rs149753675	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,5:30:74:0.068:2	./.	./.	./.	./.	./.	./.
chr9	107546614	rs192904467	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,35:30:75:0.467:2	./.	./.	./.	./.
chr9	107547731	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,6:33:72:0.083:2	./.	./.	./.	./.	./.
chr9	107550222	rs9282537	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,52:31:125:0.419:2	0/1:40,48:31:88:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	107562804	rs2230808	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,54:33:102:0.529:2	0/1:27,35:33:63:0.565:2	0/1:8,3:32:11:0.273:2	0/1:0,68:33:68:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,104:33:104:1.00:2	0/1:41,42:32:83:0.506:2	0/1:0,79:33:79:1.00:2	0/1:1,122:34:123:0.992:2	0/1:1,102:33:103:0.990:2	0/1:0,86:33:86:1.00:2
chr9	107568668	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:32:153:0.026:2	./.	./.	./.	./.
chr9	107568705	rs2066716	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,30:30:72:0.417:2	./.	0/1:49,41:31:90:0.456:2	./.	./.	./.	./.	./.
chr9	107583775	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:34:53:0.075:2
chr9	107586753	rs2066714	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:97,80:32:177:0.452:2	0/1:54,44:32:98:0.449:2	./.	./.	0/1:72,71:32:143:0.497:2	./.	0/1:109,79:32:189:0.420:2	0/1:195,5:32:200:0.025:2	./.	./.	./.
chr9	107589255	rs2066718	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,24:31:61:0.393:2	./.	./.	./.	./.	./.	./.	./.
chr9	107589305	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,20:31:42:0.476:2	0/1:15,22:33:37:0.595:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	107591272	rs2853579	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,61:29:150:0.412:2	./.	./.	./.	./.
chr9	107599376	rs9282543	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:31:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	107602666	rs2246841	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,77:30:179:0.430:2	./.	./.	./.	./.	./.	./.	./.
chr9	107602678	rs2274873	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:60,49:32:109:0.450:2	0/1:26,39:32:65:0.600:2	0/1:8,4:32:12:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	107620867	rs2230806	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:45,24:33:69:0.348:2	0/1:39,31:32:70:0.443:2	./.	0/1:42,41:33:83:0.494:2	./.	0/1:35,41:32:76:0.539:2	0/1:46,30:33:76:0.395:2	./.	./.	./.	./.
chr9	107624029	rs2230805	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:20,27:32:47:0.574:2	0/1:10,17:32:27:0.630:2	./.	0/1:26,35:30:61:0.574:2	./.	0/1:33,37:29:70:0.529:2	0/1:26,22:31:48:0.458:2	./.	./.	./.	./.
chr9	107665978	rs1800978	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,11:30:27:0.407:2	./.	./.	./.	./.
chr9	108147763	rs3199966	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,12:32:38:0.316:2	0/1:12,8:30:20:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	108152199	rs2771040	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,27:33:64:0.422:2	0/1:20,18:33:38:0.474:2	0/1:5,5:32:10:0.500:2	0/1:0,76:33:76:1.00:2	0/1:0,38:31:38:1.00:2	0/1:47,40:32:87:0.460:2	0/1:0,51:32:51:1.00:2	0/1:2,93:32:95:0.979:2	0/1:0,76:33:76:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,85:33:85:1.00:2
chr9	108200580	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:31:114:0.035:2	./.	./.	./.	./.
chr9	108230553	rs41316532	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,46:31:115:0.400:2
chr9	108234294	rs34998811	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,14:33:37:0.378:2	./.	./.	./.	./.	./.	./.	./.
chr9	108366503	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:32:76:0.053:2	./.	./.
chr9	108366734	rs34787999	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,12:32:37:0.324:2	0/1:11,10:32:21:0.476:2	0/1:1,2:31:3:0.667:2	0/1:22,21:32:43:0.488:2	0/1:20,18:31:38:0.474:2	0/1:25,21:31:46:0.457:2	./.	./.	0/1:30,28:33:58:0.483:2	0/1:26,16:33:42:0.381:2	./.
chr9	108380355	rs17309806	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,55:32:125:0.440:2	0/1:39,48:32:87:0.552:2	0/1:5,5:31:10:0.500:2	0/1:70,55:31:125:0.440:2	0/1:63,39:30:102:0.382:2	0/1:74,52:31:126:0.413:2	./.	./.	0/1:67,48:32:115:0.417:2	0/1:59,44:31:103:0.427:2	./.
chr9	108424844	rs375137881	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:31:91:0.044:2	./.	./.	./.	./.
chr9	108425267	rs45563635	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:38,21:31:59:0.356:2	0/1:23,12:32:35:0.343:2	./.	./.	./.	./.	./.	./.	./.	0/1:31,26:30:57:0.456:2	./.
chr9	108425382	rs7027450	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:29:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	109687288	rs1000152	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,19:31:54:0.352:2	./.	0/1:26,26:30:52:0.500:2
chr9	109687403	rs17723637	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:29:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	0/1:43,33:32:76:0.434:2
chr9	109687568	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:31:152:0.026:2
chr9	109687918	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,8:24:109:0.073:2	./.	./.	./.	./.	./.
chr9	109688482	rs72741799	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,46:32:79:0.582:2
chr9	109689326	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,4:32:188:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr9	109689752	rs3814541	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,20:30:37:0.541:2
chr9	109689859	rs3814540	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,55:30:56:0.982:2	0/1:0,44:29:44:1.00:2	./.	./.	./.	./.	./.	./.	0/1:57,29:29:86:0.337:2	0/1:32,17:29:49:0.347:2	0/1:0,54:29:54:1.00:2
chr9	109690578	rs80154710	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:31:57:0.070:2	./.	./.
chr9	109691071	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,31:30:80:0.388:2	./.	./.
chr9	109691521	rs17785570	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,5:31:18:0.278:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	109691676	rs3814538	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,35:31:36:1.00:2	0/1:0,12:30:12:1.00:2	0/1:1,7:33:8:0.875:2	./.	./.	./.	./.	./.	0/1:18,18:32:36:0.500:2	0/1:18,13:33:31:0.419:2	0/1:0,33:33:33:1.00:2
chr9	110062449	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:30:51:0.078:2	./.
chr9	110073982	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,3:33:59:0.052:2	./.	./.	./.	./.
chr9	110084328	rs1805329	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,51:30:52:0.981:2	./.	./.	0/1:3,74:30:77:0.961:2	./.	./.	./.
chr9	110086268	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:30:83:0.048:2	./.
chr9	110249505	rs2236599	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,59:30:92:0.641:2	./.	./.	./.	0/1:45,57:30:102:0.559:2	0/1:53,37:30:90:0.411:2	./.	./.
chr9	111617341	rs3750467	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,29:34:69:0.420:2	./.	0/1:27,41:33:68:0.603:2	0/1:22,22:33:44:0.500:2	0/1:35,37:34:72:0.514:2
chr9	111617650	rs11543179	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	0/1:35,51:31:86:0.593:2	./.	./.	./.	0/1:33,27:32:60:0.450:2	0/1:16,30:30:46:0.652:2	./.
chr9	111618163	rs3750468	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,12:30:33:0.364:2	./.	./.	./.	0/1:18,16:32:34:0.471:2	0/1:15,15:30:30:0.500:2	./.
chr9	111618209	rs17728850	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,11:29:36:0.306:2	./.	./.	./.	0/1:12,12:28:24:0.500:2	0/1:11,16:27:27:0.593:2	./.
chr9	111618309	rs3750469	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,55:31:56:0.982:2	0/1:1,36:31:37:0.973:2	./.	0/1:2,111:32:113:0.982:2	0/1:41,51:30:92:0.554:2	0/1:47,45:31:92:0.489:2	./.	./.	./.	./.	./.
chr9	111618602	rs3908996	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,155:33:155:1.00:2	0/1:0,75:32:75:1.00:2	0/1:13,16:32:29:0.552:2	0/1:1,176:33:177:0.994:2	0/1:3,167:32:170:0.982:2	0/1:97,94:32:191:0.492:2	0/1:93,76:32:169:0.450:2	./.	0/1:1,183:34:184:0.995:2	0/1:0,147:33:147:1.00:2	0/1:95,89:33:184:0.484:2
chr9	111618617	rs10979558	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,10:31:26:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	111618796	rs7864946	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:24,5:32:29:0.172:2	./.	./.	./.	0/1:8,13:31:21:0.619:2	./.	./.	./.	0/1:13,9:33:22:0.409:2	0/1:16,9:31:25:0.360:2	./.
chr9	111618926	rs11787880	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,97:31:99:0.980:2	0/1:0,61:32:61:1.00:2	./.	0/1:0,110:32:110:1.00:2	0/1:22,53:32:75:0.707:2	0/1:45,70:33:115:0.609:2	0/1:61,45:32:106:0.425:2	./.	0/1:78,53:33:131:0.405:2	0/1:59,59:32:118:0.500:2	0/1:66,63:32:129:0.488:2
chr9	111625242	rs41278347	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,54:32:95:0.568:2	./.	./.	./.	./.	./.	./.
chr9	111625913	rs4978370	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:31:50:1.00:2	0/1:0,31:30:31:1.00:2	0/1:8,4:26:12:0.333:2	0/1:0,69:32:69:1.00:2	0/1:0,56:31:56:1.00:2	0/1:43,38:32:82:0.469:2	0/1:44,47:31:91:0.516:2	./.	0/1:2,44:32:46:0.957:2	0/1:0,38:31:38:1.00:2	0/1:37,26:31:63:0.413:2
chr9	111625916	rs1054744	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,4:25:12:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	111641825	rs1538660	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,46:32:102:0.451:2	./.
chr9	111644396	rs2275495	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:16,16:32:32:0.500:2	0/1:16,11:32:27:0.407:2	./.	./.	./.	./.	0/1:35,16:31:51:0.314:2	./.	0/1:33,21:33:54:0.389:2	./.	0/1:34,28:32:62:0.452:2
chr9	111651620	rs3204145	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,23:33:43:0.535:2	./.
chr9	111653574	rs1063110	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,59:33:59:1.00:2	0/1:31,28:32:59:0.475:2	0/1:34,24:33:58:0.414:2	0/1:31,26:32:57:0.456:2	0/1:2,68:33:70:0.971:2	0/1:14,30:34:44:0.682:2	0/1:33,31:33:64:0.484:2	0/1:25,30:33:55:0.545:2
chr9	111659439	rs2230794	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,12:33:28:0.429:2	./.	./.	./.	0/1:108,85:33:193:0.440:2	./.	./.	./.	0/1:90,83:33:174:0.480:2
chr9	111659483	rs2230793	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:58,77:32:135:0.570:2	0/1:19,40:32:59:0.678:2	0/1:14,12:32:26:0.462:2	./.	./.	./.	0/1:99,71:33:170:0.418:2	./.	0/1:86,56:32:142:0.394:2	0/1:80,71:33:152:0.470:2	0/1:76,71:33:147:0.483:2
chr9	111660851	rs2230792	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:18,31:33:49:0.633:2	0/1:6,13:32:19:0.684:2	./.	./.	./.	./.	0/1:14,9:32:23:0.391:2	./.	0/1:25,16:32:41:0.390:2	0/1:19,13:31:32:0.406:2	0/1:34,21:32:55:0.382:2
chr9	111663754	rs2230791	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,33:31:103:0.320:2	./.	./.
chr9	111663793	rs10979605	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,30:32:96:0.313:2	./.	./.
chr9	111668652	rs838827	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,52:33:112:0.464:2	0/1:38,29:33:67:0.433:2	./.	./.	./.	./.	./.	./.	0/1:59,70:34:130:0.543:2	./.	./.
chr9	111679872	rs12340246	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,20:31:56:0.357:2	./.	./.	./.	0/1:56,41:32:97:0.423:2
chr9	111727670	rs7021366	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,25:32:58:0.431:2	0/1:21,24:32:45:0.533:2	./.	./.	./.	0/1:35,33:33:68:0.485:2	0/1:32,24:32:56:0.429:2	./.
chr9	111754288	rs838836	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,3:33:20:0.150:2	0/1:14,6:33:20:0.300:2	0/1:0,6:34:6:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,41:33:41:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,24:32:24:1.00:2	0/1:13,11:34:24:0.458:2	0/1:0,27:32:27:1.00:2	0/1:0,41:32:41:1.00:2
chr9	111755008	rs2297581	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,108:30:189:0.571:2	0/1:88,55:29:143:0.385:2	./.	./.	./.	0/1:112,71:31:183:0.388:2	0/1:66,65:30:131:0.496:2	./.
chr9	111812908	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:32:178:0.022:2
chr9	111822651	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:30:61:0.066:2	./.	./.	./.	./.	./.
chr9	111868885	rs2271878	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,25:33:46:0.543:2	0/1:20,6:32:26:0.231:2	./.	./.	./.	0/1:19,15:34:34:0.441:2	0/1:13,13:32:26:0.500:2	./.
chr9	111881856	rs1051474	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.
chr9	111881927	rs6825	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,14:32:42:0.333:2	0/1:0,18:32:18:1.00:2	./.	./.	./.	0/1:20,4:32:24:0.167:2	0/1:19,10:33:29:0.345:2	./.
chr9	111938834	rs201310807	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,26:31:56:0.464:2	./.	./.	./.	./.	./.	./.	./.
chr9	111938926	rs10979729	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:31:11:0.727:2	./.	./.	./.	0/1:33,34:31:67:0.507:2	./.	./.	./.	0/1:42,42:32:84:0.500:2
chr9	111945049	rs3750450	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,12:32:13:0.923:2	0/1:0,44:32:44:1.00:2	0/1:21,15:31:36:0.417:2	0/1:18,40:31:58:0.690:2	0/1:0,44:32:44:1.00:2	0/1:0,81:31:81:1.00:2	0/1:1,61:32:62:0.984:2	0/1:65,4:32:69:0.058:2	0/1:1,77:31:78:0.987:2
chr9	111956526	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,6:31:124:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	111956599	rs3750447	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,87:32:178:0.489:2	0/1:42,57:31:99:0.576:2	0/1:20,20:31:40:0.500:2	0/1:99,78:32:177:0.441:2	0/1:76,107:32:183:0.585:2	0/1:109,82:31:191:0.429:2	0/1:99,77:31:176:0.438:2	0/1:2,175:32:177:0.989:2	0/1:99,86:33:185:0.465:2	./.	0/1:80,87:32:168:0.521:2
chr9	112082510	rs117569740	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	./.	./.
chr9	112145729	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:147,4:34:151:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr9	112145796	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:31:131:0.031:2	./.	./.	./.	./.	./.
chr9	112145799	rs2304742	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,52:32:103:0.505:2	0/1:27,33:32:60:0.550:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	112166845	rs34302609	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,30:31:59:0.508:2	./.	./.	./.	./.
chr9	112172674	rs17803052	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,62:33:141:0.440:2	0/1:55,42:33:97:0.433:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	112219474	rs3793524	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:46,40:30:86:0.465:2	0/1:35,26:31:61:0.426:2	./.	./.	0/1:52,33:31:85:0.388:2	./.	0/1:61,30:32:91:0.330:2	./.	./.	./.	./.
chr9	112629858	rs2769154	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,15:31:15:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,3:29:3:1.00:2	0/1:0,17:27:17:1.00:2	0/1:0,23:28:23:1.00:2	0/1:5,11:29:16:0.688:2	./.	0/1:0,39:30:39:1.00:2	./.	0/1:10,7:29:17:0.412:2	./.
chr9	112687381	rs41278409	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,61:32:117:0.521:2	0/1:37,30:32:67:0.448:2	./.	./.	./.	./.	./.	./.	0/1:89,70:32:160:0.440:2	0/1:49,67:31:116:0.578:2	./.
chr9	112898576	rs151065500	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,68:31:158:0.430:2	./.	./.
chr9	112899034	rs115538409	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,61:32:133:0.459:2	./.	./.
chr9	112899361	rs4978872	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,35:32:36:0.972:2	0/1:0,20:32:20:1.00:2	./.	0/1:0,34:33:34:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,30:33:30:1.00:2	0/1:20,25:33:45:0.556:2	0/1:0,68:32:68:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,35:31:35:1.00:2	0/1:31,15:33:46:0.326:2
chr9	112900199	rs914358	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:40,21:29:61:0.344:2	0/1:25,17:29:42:0.405:2	./.	0/1:42,38:29:80:0.475:2	./.	./.	./.	0/1:57,39:29:96:0.406:2	0/1:42,30:30:72:0.417:2	./.	0/1:30,31:28:61:0.508:2
chr9	112900785	rs3739456	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,14:29:43:0.326:2	./.	0/1:42,22:31:64:0.344:2	0/1:26,23:30:49:0.469:2	./.	0/1:0,34:30:34:1.00:2	./.
chr9	112963504	rs10120707	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,116:32:116:1.00:2	0/1:0,93:31:93:1.00:2	0/1:0,20:32:20:1.00:2	0/1:1,137:32:139:0.993:2	0/1:0,127:32:127:1.00:2	0/1:0,151:32:151:1.00:2	0/1:0,115:32:115:1.00:2	0/1:1,149:31:150:0.993:2	0/1:0,156:33:156:1.00:2	0/1:0,146:32:146:1.00:2	0/1:87,61:32:148:0.412:2
chr9	112963702	rs4978888	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,10:32:10:1.00:2	0/1:0,7:31:7:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	112969703	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,4:30:39:0.103:2	./.	./.	./.	./.	./.
chr9	113006420	rs5843	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,61:33:62:0.984:2	0/1:0,44:32:44:1.00:2	./.	./.	0/1:24,27:31:52:0.529:2	0/1:68,5:31:73:0.068:2	0/1:31,18:32:49:0.367:2	0/1:0,70:31:70:1.00:2	0/1:0,71:32:71:1.00:2	0/1:1,68:32:70:0.986:2	./.
chr9	113006431	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:31:92:0.043:2	./.	./.	./.	./.	./.
chr9	113091523	rs7041938	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,5:32:17:0.294:2	./.	./.	./.	./.	./.	./.	./.
chr9	113096587	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:32:49:0.082:2	./.
chr9	113132221	rs17204533	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,27:31:65:0.415:2	0/1:39,37:31:76:0.487:2	./.	./.	0/1:50,38:32:88:0.432:2	./.	0/1:40,16:33:56:0.286:2	./.
chr9	113148181	rs145193955	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,58:33:127:0.457:2	./.	./.
chr9	113148239	rs10817003	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,86:30:162:0.531:2	./.	./.	./.	./.	./.	./.
chr9	113166697	rs1410049	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,4:32:12:0.333:2	0/1:76,74:31:150:0.493:2	0/1:58,37:31:95:0.389:2	0/1:0,127:31:127:1.00:2	0/1:0,118:32:118:1.00:2	0/1:102,78:32:180:0.433:2	0/1:89,77:32:166:0.464:2	0/1:0,149:32:149:1.00:2	0/1:1,178:32:179:0.994:2
chr9	113166702	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2
chr9	113168501	rs41278435	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,52:32:136:0.382:2	./.	./.	./.
chr9	113169126	rs2281937	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,61:31:62:0.984:2	0/1:1,58:31:59:0.983:2	./.	./.	./.	0/1:32,29:32:61:0.475:2
chr9	113169203	.	T	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:26,12:20:38:0.316:2	0/1:16,6:22:22:0.273:2	./.	./.	0/1:48,19:14:67:0.284:2	0/1:38,13:20:51:0.255:2	0/1:54,13:16:67:0.194:2	0/1:55,15:17:70:0.214:2	0/1:26,12:14:38:0.316:2	0/1:30,11:21:41:0.268:2	0/1:31,5:21:36:0.139:2
chr9	113169630	rs7046213	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,7:28:30:0.233:2	0/1:96,74:29:170:0.435:2	0/1:75,70:31:145:0.483:2	0/1:1,148:32:149:0.993:2	0/1:0,164:32:164:1.00:2	0/1:98,61:28:159:0.384:2	0/1:106,71:29:177:0.401:2	0/1:1,154:31:155:0.994:2	0/1:0,169:30:169:1.00:2
chr9	113169631	rs7030192	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,70:30:143:0.490:2	0/1:1,147:31:149:0.993:2	0/1:0,163:31:163:1.00:2	./.	./.	0/1:84,73:32:158:0.465:2	0/1:94,80:31:174:0.460:2
chr9	113169775	rs111245230	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,43:31:95:0.453:2	./.	./.	./.	./.	./.	./.
chr9	113189954	rs41279045	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,60:30:124:0.484:2	./.	./.	./.
chr9	113189966	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,58:32:127:0.457:2	./.	./.
chr9	113191533	rs75212846	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,11:31:17:0.647:2	./.	./.	./.
chr9	113191597	rs76469101	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:29:7:0.571:2	./.	./.	./.
chr9	113192655	rs2986671	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:52,53:33:105:0.505:2	0/1:28,18:33:46:0.391:2	./.	0/1:43,51:33:94:0.543:2	0/1:44,37:32:81:0.457:2	./.	./.	0/1:34,53:33:87:0.609:2	./.	./.	./.
chr9	113196733	rs7852962	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,57:32:112:0.509:2	./.	./.	./.	./.	0/1:37,34:32:71:0.479:2	./.
chr9	113208188	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.	./.	./.	./.	./.
chr9	113208250	rs7863519	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,42:32:78:0.538:2	./.	./.	0/1:63,52:31:115:0.452:2	./.	0/1:59,57:32:116:0.491:2	./.
chr9	113209195	rs1889323	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,13:33:34:0.382:2	0/1:12,19:33:31:0.613:2	0/1:21,17:32:38:0.447:2
chr9	113212387	rs78239740	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,35:30:73:0.479:2	0/1:35,33:29:68:0.485:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	113212454	rs10817021	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,66:32:135:0.489:2	0/1:48,34:32:82:0.415:2	0/1:86,64:32:150:0.427:2
chr9	113220820	rs10980398	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,8:32:22:0.364:2	0/1:9,16:33:25:0.640:2	./.	0/1:19,22:32:41:0.537:2	0/1:18,11:32:29:0.379:2	./.	./.	0/1:10,21:32:31:0.677:2	./.	./.	./.
chr9	113221247	rs7038903	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,27:30:68:0.397:2	./.	./.	./.	./.	0/1:53,30:29:83:0.361:2	./.
chr9	113233720	rs10980402	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:59,49:32:108:0.454:2	0/1:61,37:31:98:0.378:2	./.	0/1:58,53:32:112:0.477:2	0/1:61,43:32:104:0.413:2	./.	./.	0/1:60,47:32:107:0.439:2	./.	./.	./.
chr9	113234507	rs10817025	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:69,68:33:137:0.496:2	0/1:48,35:31:83:0.422:2	0/1:7,9:32:16:0.563:2	./.	./.	./.	./.	0/1:96,74:32:170:0.435:2	0/1:4,183:33:187:0.979:2	0/1:76,61:32:137:0.445:2	0/1:103,88:33:191:0.461:2
chr9	113244732	rs41296069	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,52:31:108:0.481:2	./.	./.	./.	0/1:97,43:31:140:0.307:2	./.	./.	./.
chr9	113251951	rs13286541	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:57,41:29:98:0.418:2	0/1:43,32:29:75:0.427:2	0/1:10,7:31:17:0.412:2	./.	./.	./.	./.	./.	0/1:78,86:30:164:0.524:2	./.	./.
chr9	113259152	rs10817033	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,94:29:163:0.577:2	0/1:104,77:29:181:0.425:2	./.	./.	./.	./.	./.
chr9	113261483	rs872665	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:43,52:30:95:0.547:2	0/1:25,26:31:51:0.510:2	./.	./.	./.	./.	0/1:55,61:30:118:0.526:2	0/1:65,45:30:110:0.409:2	0/1:77,65:31:142:0.458:2	./.	./.
chr9	113276356	rs3818764	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,13:32:18:0.722:2	0/1:75,59:33:134:0.440:2	./.	./.	0/1:91,93:32:184:0.505:2	./.	./.	0/1:76,42:31:118:0.356:2	0/1:86,94:32:182:0.522:2
chr9	113308525	rs41305611	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,66:32:123:0.537:2	./.	./.	./.	./.	0/1:48,56:33:104:0.538:2	./.
chr9	113312217	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:34:129:0.031:2	./.
chr9	113312231	rs61751937	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,75:32:146:0.514:2	./.	0/1:104,73:32:177:0.412:2	./.	./.	./.
chr9	113341821	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:37:7:0.429:2	./.	./.	./.	./.	./.	./.	./.
chr9	113449489	rs35142681	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,88:32:167:0.527:2	./.
chr9	113449510	rs55786136	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,92:31:175:0.526:2	./.
chr9	113457726	rs10980531	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:34,32:33:66:0.485:2	0/1:29,21:32:50:0.420:2	./.	./.	0/1:35,16:31:51:0.314:2	./.	./.	0/1:39,54:32:93:0.581:2	./.	./.	./.
chr9	113457799	rs35176182	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:30,28:30:58:0.483:2	0/1:19,23:30:42:0.548:2	0/1:2,3:30:5:0.600:2	./.	0/1:29,23:30:52:0.442:2	./.	0/1:34,22:30:57:0.393:2	./.	./.	./.	./.
chr9	113459655	rs41279051	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:41,26:32:67:0.388:2	0/1:28,17:31:45:0.378:2	0/1:8,7:33:15:0.467:2	./.	0/1:25,29:31:54:0.537:2	./.	0/1:46,40:31:86:0.465:2	./.	./.	./.	0/1:54,35:31:90:0.393:2
chr9	113538122	rs2274419	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:41,29:31:70:0.414:2	0/1:21,25:32:46:0.543:2	0/1:7,5:32:12:0.417:2	./.	./.	./.	./.	./.	./.	./.	0/1:58,38:31:96:0.396:2
chr9	113550168	rs2766999	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,56:33:122:0.459:2	0/1:48,36:32:84:0.429:2	0/1:12,7:34:19:0.368:2	0/1:5,92:32:97:0.948:2	./.	0/1:102,46:32:148:0.311:2	./.	./.	0/1:96,62:33:158:0.392:2	0/1:1,122:32:124:0.992:2	0/1:109,81:32:190:0.426:2
chr9	113563143	rs578430	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,37:33:88:0.420:2
chr9	113637854	rs3739709	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:56,44:31:100:0.440:2	0/1:34,19:30:53:0.358:2	0/1:13,6:31:19:0.316:2	./.	./.	./.	0/1:84,49:32:133:0.368:2	./.	./.	./.	0/1:61,60:32:121:0.496:2
chr9	113703969	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:32:116:0.034:2	./.	./.	./.	./.	./.
chr9	113704224	rs17788474	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,19:32:38:0.500:2	0/1:15,17:32:32:0.531:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	114089882	rs61748723	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,50:32:128:0.391:2	./.	./.	./.	./.	./.
chr9	114090279	rs314452	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,19:31:39:0.487:2	0/1:12,13:32:25:0.520:2	0/1:1,3:30:4:0.750:2	0/1:2,54:33:56:0.964:2	./.	0/1:36,25:32:61:0.410:2	./.	0/1:0,74:32:74:1.00:2	0/1:0,45:33:45:1.00:2	./.	./.
chr9	114090367	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:33:111:0.036:2	./.	./.	./.
chr9	114125854	rs2297525	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,20:31:43:0.465:2	./.	./.	./.	./.	./.
chr9	114174415	rs2418163	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,20:32:46:0.435:2	0/1:16,13:33:29:0.448:2	0/1:2,5:33:7:0.714:2	0/1:30,29:33:59:0.492:2	./.	0/1:27,10:33:37:0.270:2	./.	0/1:2,49:33:51:0.961:2	0/1:1,43:34:44:0.977:2	./.	./.
chr9	114190337	rs16916100	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,30:31:73:0.411:2	./.	./.	./.	./.	./.
chr9	114195577	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:29:89:0.045:2	./.	./.	./.	./.
chr9	114195587	rs2297530	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,35:31:72:0.486:2	./.	./.	./.	./.	./.
chr9	114246967	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:33:190:0.021:2
chr9	114326547	rs7036102	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,15:31:44:0.341:2	./.	./.	./.	./.	./.	./.
chr9	114345788	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,6:28:73:0.082:2	./.
chr9	114355237	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:31:91:0.044:2	./.
chr9	114359624	rs1053959	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:2,36:32:38:0.947:2	0/1:0,7:31:7:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,19:31:19:1.00:2	./.	0/1:23,19:32:42:0.452:2	0/1:36,20:31:56:0.357:2	0/1:43,38:32:81:0.469:2	0/1:38,23:32:61:0.377:2	0/1:39,33:33:72:0.458:2
chr9	114359657	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:32:48:0.083:2	./.	./.	./.	./.
chr9	114366094	rs966627	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,26:33:64:0.406:2	0/1:22,18:32:40:0.450:2	0/1:9,8:32:17:0.471:2	0/1:59,44:34:103:0.427:2	0/1:76,25:32:101:0.248:2	./.	./.	./.	0/1:85,47:34:133:0.356:2	0/1:45,27:34:72:0.375:2	./.
chr9	114371300	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:32:168:0.024:2	./.	./.	./.
chr9	114371322	rs4978450	T	C,A	.	PASS	AC=3,3;AF=0.167,0.167;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant9-variant10-variant11	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0/2:32:135:0.515:2	0/2:31:62:0.452:2	0/1:33:15:0.600:2	0/2:31:149:0.470:2	./.	./.	0/1:32:196:0.421:2	./.	./.	0/1:32:146:0.486:2	./.
chr9	114371493	rs12351897	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:71,92:32:163:0.564:2	0/1:33,39:32:72:0.542:2	./.	0/1:65,87:31:152:0.572:2	0/1:63,76:31:139:0.547:2	./.	./.	./.	./.	./.	./.
chr9	114411891	rs1322259	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,18:32:55:0.327:2	./.	./.	./.	./.	./.	./.	./.
chr9	114411945	rs7019332	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,18:30:40:0.450:2	0/1:14,13:30:28:0.481:2	./.	0/1:15,17:30:32:0.531:2	./.	./.	0/1:0,30:30:30:1.00:2	0/1:24,32:30:56:0.571:2
chr9	114429129	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:33:97:0.041:2	./.	./.
chr9	114453925	rs1322254	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,15:32:29:0.517:2	./.	./.	./.	./.
chr9	114454544	rs7869279	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,87:33:87:1.00:2	0/1:0,47:32:47:1.00:2	./.	0/1:36,40:33:76:0.526:2	0/1:20,23:33:43:0.535:2	0/1:24,30:31:54:0.556:2	./.	./.	./.	0/1:30,33:33:63:0.524:2	0/1:41,53:33:94:0.564:2
chr9	114454580	rs1475110	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:32:92:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,63:33:63:1.00:2	0/1:0,90:33:90:1.00:2
chr9	114454732	rs12343237	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,16:32:37:0.432:2	./.	./.	./.	./.
chr9	114462322	rs6477845	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:31:22:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,2:29:2:1.00:2	0/1:0,41:31:41:1.00:2	0/1:42,17:30:59:0.288:2	0/1:10,18:30:28:0.643:2	0/1:22,16:29:38:0.421:2	0/1:20,16:31:36:0.444:2	0/1:29,18:30:47:0.383:2	0/1:16,15:30:31:0.484:2	0/1:0,43:30:43:1.00:2
chr9	114464487	rs1407390	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:33:75:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,70:32:70:1.00:2	0/1:11,16:31:27:0.593:2	0/1:28,34:32:62:0.548:2	0/1:23,20:32:43:0.465:2	0/1:45,24:32:69:0.348:2	0/1:42,35:32:77:0.455:2	0/1:25,33:32:58:0.569:2	0/1:0,102:32:102:1.00:2
chr9	114468966	rs7036568	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,25:33:40:0.625:2	./.	./.	0/1:9,9:32:18:0.500:2	0/1:13,16:32:29:0.552:2	0/1:14,34:32:48:0.708:2	./.	0/1:18,18:33:37:0.500:2
chr9	114475404	rs28551718	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,16:32:24:0.667:2	./.	./.	./.	./.
chr9	114476748	rs11791445	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,9:32:18:0.500:2	0/1:101,57:32:158:0.361:2	./.	./.	./.	0/1:110,53:32:163:0.325:2	0/1:120,77:32:197:0.391:2	./.	0/1:101,95:32:196:0.485:2
chr9	114480562	rs1322257	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,14:32:34:0.412:2	./.	./.	./.	./.
chr9	114484747	rs375505127	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,6:28:25:0.240:2	./.	./.	./.	./.	./.	./.
chr9	114484783	rs12352352	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,19:32:41:0.463:2	./.	./.	./.	0/1:33,17:32:50:0.340:2	0/1:50,29:33:79:0.367:2	./.	0/1:33,36:33:69:0.522:2
chr9	114490229	rs10512411	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:33:10:0.400:2	0/1:61,50:33:111:0.450:2	./.	./.	./.	0/1:74,55:33:129:0.426:2	0/1:72,63:33:135:0.467:2	./.	0/1:78,56:32:134:0.418:2
chr9	114490308	rs7470491	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,92:28:94:0.979:2	0/1:0,44:29:44:1.00:2	0/1:0,12:29:12:1.00:2	0/1:1,83:28:84:0.988:2	0/1:37,25:27:62:0.403:2	0/1:44,51:28:95:0.537:2	0/1:46,17:30:63:0.270:2	0/1:77,38:29:115:0.330:2	0/1:65,48:29:113:0.425:2	0/1:36,37:29:73:0.507:2	0/1:0,134:29:134:1.00:2
chr9	114508557	rs41306457	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,23:33:42:0.548:2	./.	./.	./.
chr9	114510473	rs10981047	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,9:33:27:0.333:2	./.	./.	./.	./.
chr9	114521086	rs41308926	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,12:32:23:0.522:2	0/1:38,21:30:59:0.356:2	./.	./.	./.	./.	./.
chr9	114694486	rs7850023	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:68,54:29:122:0.443:2	0/1:26,28:27:54:0.519:2	./.	./.	0/1:41,62:28:103:0.602:2	./.	./.	./.	./.	./.	0/1:0,170:29:170:1.00:2
chr9	114804173	rs3849117	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,46:30:94:0.489:2	./.	0/1:54,34:30:88:0.386:2	./.	./.	./.	./.	./.
chr9	114840837	rs147151457	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,15:31:53:0.283:2	./.	./.	./.	./.	./.	./.
chr9	114911574	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:33:142:0.028:2	./.
chr9	115095743	rs7040447	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,14:32:14:1.00:2	0/1:2,11:31:13:0.846:2	0/1:0,4:33:4:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,22:31:22:1.00:2	0/1:14,8:33:22:0.364:2	0/1:1,17:33:18:0.944:2	0/1:22,14:32:36:0.389:2	0/1:0,25:33:25:1.00:2	0/1:9,14:32:23:0.609:2	0/1:11,5:32:16:0.313:2
chr9	115171272	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,4:30:101:0.040:2	./.	./.	./.	./.	./.	./.
chr9	115421605	rs61729758	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,9:32:31:0.290:2	./.	./.	./.	./.	./.	./.	./.
chr9	115567184	rs1891402	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,144:30:144:1.00:2	0/1:0,82:30:82:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,189:30:189:1.00:2	0/1:1,182:29:183:0.995:2	0/1:2,179:29:181:0.989:2	0/1:0,187:30:187:1.00:2	0/1:1,174:30:176:0.994:2	0/1:0,165:31:165:1.00:2	0/1:1,183:31:185:0.995:2	0/1:0,167:30:167:1.00:2
chr9	115580008	rs10117709	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:32:64:1.00:2	0/1:1,57:32:58:0.983:2	0/1:0,7:32:7:1.00:2	0/1:0,100:33:100:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,76:32:76:1.00:2	0/1:5,53:33:58:0.914:2	0/1:0,92:33:92:1.00:2	0/1:95,41:34:136:0.301:2	0/1:1,83:32:84:0.988:2	0/1:1,145:33:146:0.993:2
chr9	115598610	rs76424583	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,38:33:89:0.427:2	./.	./.
chr9	115600827	rs41280189	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,47:32:86:0.547:2	./.	./.
chr9	115600848	rs7023478	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:30:70:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,9:27:9:1.00:2	0/1:0,103:30:103:1.00:2	0/1:0,53:29:54:1.00:2	0/1:0,90:29:91:1.00:2	0/1:1,78:30:79:0.987:2	0/1:0,102:29:102:1.00:2	0/1:0,72:30:72:1.00:2	0/1:0,48:29:48:1.00:2	0/1:0,80:30:80:1.00:2
chr9	115626566	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,22:11:154:0.145:2	./.	./.	./.	./.
chr9	115652605	rs142789300	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,33:32:60:0.550:2	./.	./.
chr9	115652836	rs3802492	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,12:30:31:0.387:2	0/1:12,3:32:15:0.200:2	./.	./.	0/1:1,29:30:30:0.967:2	0/1:24,18:31:42:0.429:2	0/1:19,12:30:31:0.387:2	./.	0/1:32,26:30:58:0.448:2	0/1:16,16:31:32:0.500:2	0/1:18,18:31:36:0.500:2
chr9	115652881	rs3802491	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,8:28:17:0.471:2	./.	0/1:13,13:32:26:0.500:2	./.	0/1:7,9:31:16:0.563:2	0/1:8,17:32:25:0.680:2	./.	./.
chr9	115759519	rs10981589	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,40:32:117:0.342:2	./.
chr9	115760001	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:29:77:0.052:2	./.	./.	./.	./.	./.
chr9	115818949	rs2282076	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:26,27:30:53:0.509:2	./.	0/1:0,52:29:52:1.00:2	0/1:1,49:29:50:0.980:2	0/1:25,21:30:46:0.457:2	0/1:22,15:32:37:0.405:2	0/1:8,15:30:23:0.652:2	0/1:0,29:30:29:1.00:2
chr9	115925104	rs3810906	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:95,95:32:190:0.500:2	0/1:65,73:32:138:0.529:2	./.	./.	./.	./.	./.	0/1:110,78:33:188:0.415:2	./.	./.	0/1:113,76:33:189:0.402:2
chr9	115931593	rs1128122	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,90:33:185:0.486:2	./.	0/1:108,76:33:184:0.413:2	./.	./.
chr9	115931692	rs3810909	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:79,63:32:142:0.444:2	0/1:64,33:32:97:0.340:2	./.	./.	./.	./.	./.	0/1:86,97:32:183:0.530:2	./.	./.	./.
chr9	115931703	rs3810910	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:71,80:31:151:0.530:2	0/1:37,60:31:97:0.619:2	./.	./.	0/1:76,54:30:130:0.415:2	0/1:89,66:31:155:0.426:2	./.	./.	./.	0/1:67,79:31:146:0.541:2	./.
chr9	115931728	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,5:28:177:0.028:2
chr9	115932012	rs57348436	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,62:31:130:0.477:2	./.	0/1:36,36:31:72:0.500:2	./.	./.
chr9	115933885	rs1128118	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,36:30:98:0.367:2	./.	0/1:58,62:31:120:0.517:2	./.	./.
chr9	115933978	rs1128117	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,48:32:111:0.432:2	./.	0/1:66,62:33:128:0.484:2	./.	./.
chr9	115933980	rs1128116	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,48:31:111:0.432:2	./.	0/1:62,62:32:124:0.500:2	./.	./.
chr9	115941046	rs3810912	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:30:5:0.800:2	./.	./.	0/1:15,20:30:35:0.571:2	0/1:27,25:30:52:0.481:2	./.	./.	0/1:20,18:29:38:0.474:2	./.
chr9	115950156	rs10465129	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,62:31:135:0.459:2
chr9	115950706	rs10435864	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,16:34:35:0.457:2	0/1:2,8:32:10:0.800:2	./.	./.	0/1:9,12:32:21:0.571:2	0/1:0,38:32:38:1.00:2	0/1:22,9:32:31:0.290:2	./.	./.	0/1:0,28:33:28:1.00:2	0/1:15,6:34:22:0.286:2
chr9	115968862	rs45623732	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,17:32:42:0.405:2	0/1:23,12:33:35:0.343:2	./.	./.	0/1:24,25:32:49:0.510:2	./.
chr9	115969523	rs201405437	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,80:32:191:0.419:2	./.	./.	./.
chr9	115983540	rs2233914	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,40:32:70:0.571:2
chr9	116028559	rs10124895	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,11:32:27:0.407:2	0/1:12,8:29:20:0.400:2	./.	./.	0/1:5,7:31:12:0.583:2	0/1:17,13:30:30:0.433:2	0/1:16,11:31:27:0.407:2	./.	0/1:28,19:31:47:0.404:2	./.	./.
chr9	116044998	rs11552582	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:34:11:0.636:2	./.	0/1:54,54:32:108:0.500:2	0/1:68,51:33:119:0.429:2	0/1:63,46:33:109:0.422:2	./.	0/1:85,52:34:137:0.380:2	./.	0/1:66,84:34:150:0.560:2
chr9	116060124	rs3750534	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:30:10:0.400:2	./.	0/1:52,37:30:89:0.416:2	0/1:47,46:31:93:0.495:2	0/1:32,32:30:64:0.500:2	./.	0/1:46,28:31:74:0.378:2	./.	0/1:28,33:30:61:0.541:2
chr9	116060221	rs3750533	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:30:8:0.750:2	./.	0/1:43,36:30:79:0.456:2	0/1:44,39:30:83:0.470:2	0/1:44,27:30:71:0.380:2	./.	0/1:34,29:31:63:0.460:2	./.	0/1:20,21:31:41:0.512:2
chr9	116060487	rs3750532	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:34:13:0.385:2	./.	0/1:42,34:30:76:0.447:2	0/1:31,23:30:54:0.426:2	0/1:34,22:32:56:0.393:2	./.	0/1:35,28:34:63:0.444:2	./.	0/1:14,26:32:40:0.650:2
chr9	116082647	rs41307479	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,29:32:90:0.322:2	0/1:57,37:33:94:0.394:2	./.	./.	./.	./.	./.
chr9	116085413	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:32:122:0.033:2	./.	./.	./.
chr9	116085423	rs10817479	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,33:31:79:0.418:2	./.	0/1:41,33:31:74:0.446:2	./.	./.	./.	./.	./.
chr9	116122954	rs752757	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,27:32:38:0.711:2	0/1:21,17:32:38:0.447:2	./.	0/1:1,63:32:64:0.984:2	0/1:54,48:32:102:0.471:2	./.	0/1:54,45:32:99:0.455:2	./.	0/1:30,39:32:69:0.565:2	./.	./.
chr9	116132092	rs818711	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,31:32:65:0.477:2
chr9	116132275	rs3750529	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,30:32:44:0.682:2	./.	0/1:15,25:32:40:0.625:2	./.	./.
chr9	116132334	rs3088235	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,15:30:32:0.469:2	0/1:15,22:29:37:0.595:2	./.	./.	./.	0/1:8,17:31:25:0.680:2	./.
chr9	116136025	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:32:44:0.091:2	./.
chr9	116136155	rs17765613	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,14:32:25:0.560:2	./.
chr9	116136198	rs1043836	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,21:31:44:0.477:2	0/1:13,17:32:30:0.567:2	0/1:0,4:31:4:1.00:2	0/1:41,44:31:85:0.518:2	./.	0/1:0,66:31:67:1.00:2	0/1:2,66:32:68:0.971:2	0/1:0,80:32:80:1.00:2	0/1:23,27:33:50:0.540:2	./.	0/1:0,54:31:55:1.00:2
chr9	116153891	rs1800435	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,105:32:106:0.991:2	./.	0/1:54,45:31:99:0.455:2	./.	0/1:51,50:31:101:0.495:2	./.	./.	./.
chr9	116153900	rs1139488	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:46,32:30:78:0.410:2	0/1:21,14:29:35:0.400:2	./.	./.	0/1:46,49:30:95:0.516:2	./.	0/1:2,80:30:82:0.976:2	./.	0/1:0,92:31:93:1.00:2	./.	./.
chr9	116154437	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,40:32:86:0.465:2	./.	./.
chr9	116181419	rs113088354	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,25:31:48:0.521:2
chr9	116186544	rs41313331	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:25,27:32:52:0.519:2	0/1:15,17:32:32:0.531:2	0/1:0,7:31:7:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	116191187	rs143283507	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,13:32:38:0.342:2	./.	./.	./.	./.
chr9	116269882	rs145778128	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,29:31:62:0.468:2	0/1:27,20:31:47:0.426:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	116270869	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,10:31:17:0.588:2	./.	./.
chr9	116346287	rs3810927	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,28:29:48:0.583:2	0/1:14,6:30:20:0.300:2	0/1:6,3:30:9:0.333:2	0/1:35,29:29:64:0.453:2	./.	0/1:34,29:28:63:0.460:2	./.	0/1:53,30:29:83:0.361:2	./.	0/1:27,17:31:44:0.386:2	0/1:0,48:29:48:1.00:2
chr9	116356373	rs12350531	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,130:32:131:0.992:2	0/1:1,82:32:83:0.988:2	0/1:9,6:32:15:0.400:2	0/1:1,156:32:157:0.994:2	0/1:0,89:32:89:1.00:2	0/1:0,141:32:141:1.00:2	0/1:0,121:33:121:1.00:2	0/1:1,168:32:169:0.994:2	./.	0/1:1,117:33:118:0.992:2	0/1:1,139:32:140:0.993:2
chr9	116356516	rs12341266	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:33:23:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,27:31:27:1.00:2	./.	0/1:0,14:33:14:1.00:2	0/1:0,22:32:22:1.00:2
chr9	116356529	rs10817493	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,20:32:20:1.00:2	0/1:0,19:32:19:1.00:2	./.	0/1:0,22:32:22:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,22:32:23:1.00:2	./.	0/1:0,14:30:14:1.00:2	0/1:0,16:31:16:1.00:2
chr9	116356776	rs61749208	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:32:8:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	116764283	rs4978561	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:50,24:32:74:0.324:2	0/1:15,23:31:38:0.605:2	./.	0/1:65,51:32:116:0.440:2	./.	0/1:62,63:31:125:0.504:2	./.	0/1:80,64:32:144:0.444:2	./.	0/1:64,41:32:105:0.390:2	0/1:55,63:32:118:0.534:2
chr9	116770776	rs3748183	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:16,26:31:42:0.619:2	0/1:17,7:31:24:0.292:2	./.	0/1:43,49:30:92:0.533:2	./.	0/1:42,26:30:68:0.382:2	./.	0/1:46,43:31:89:0.483:2	./.	0/1:43,37:31:80:0.463:2	0/1:39,31:30:70:0.443:2
chr9	116770785	rs3748182	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:17,24:33:41:0.585:2	0/1:15,7:32:22:0.318:2	./.	0/1:39,43:31:82:0.524:2	./.	0/1:37,24:32:61:0.393:2	./.	0/1:41,36:32:77:0.468:2	./.	0/1:39,35:33:75:0.473:2	0/1:37,28:31:65:0.431:2
chr9	116791161	rs7030167	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,20:28:31:0.645:2	0/1:6,7:30:13:0.538:2	0/1:0,3:31:3:1.00:2	0/1:20,34:30:54:0.630:2	0/1:1,34:29:35:0.971:2	0/1:19,17:31:36:0.472:2	0/1:0,28:30:28:1.00:2	0/1:42,20:29:62:0.323:2	0/1:0,24:30:24:1.00:2	0/1:16,15:28:31:0.484:2	0/1:14,11:28:25:0.440:2
chr9	116794918	rs73658317	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,39:29:81:0.481:2	./.	./.	./.	./.	./.	./.	./.
chr9	116810204	rs12378906	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,31:30:68:0.456:2	0/1:41,51:30:92:0.554:2	./.	./.	0/1:55,34:30:89:0.382:2	./.	./.
chr9	116811394	rs16912115	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,103:32:195:0.528:2	./.	./.	./.	./.	./.	./.	./.
chr9	116812084	rs7856141	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,33:31:70:0.471:2	0/1:32,28:31:60:0.467:2	./.	./.	0/1:23,29:32:52:0.558:2	./.	./.
chr9	116856174	rs34105930	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,24:31:74:0.324:2	./.	./.	./.	./.	./.	./.	./.
chr9	116856481	rs35719524	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:33,19:31:52:0.365:2	0/1:17,10:29:27:0.370:2	0/1:1,3:32:4:0.750:2	./.	0/1:1,45:31:46:0.978:2	./.	./.	./.	./.	./.	./.
chr9	116856657	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:32:68:0.059:2	./.	./.	./.	./.	./.
chr9	116930100	rs2567707	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,18:31:47:0.383:2	./.	0/1:1,32:31:33:0.970:2	0/1:1,43:30:44:0.977:2	./.	./.	0/1:15,16:31:31:0.516:2
chr9	116930194	rs2567706	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:30:9:0.667:2	./.	0/1:38,24:31:62:0.387:2	./.	0/1:2,28:31:30:0.933:2	0/1:0,48:30:48:1.00:2	./.	./.	0/1:10,9:31:19:0.474:2
chr9	116930633	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	116930880	rs34973417	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,39:31:68:0.574:2	0/1:10,12:31:22:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	116931099	rs2241671	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,21:31:38:0.553:2	0/1:20,21:30:41:0.512:2	0/1:26,18:29:44:0.409:2	0/1:0,34:31:34:1.00:2	0/1:0,38:31:38:1.00:2	./.	./.	0/1:0,33:30:33:1.00:2
chr9	116931445	rs2808770	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,33:31:52:0.635:2	./.	0/1:2,38:32:40:0.950:2	0/1:0,33:32:33:1.00:2	./.	./.	0/1:15,23:32:38:0.605:2
chr9	116931666	rs2567705	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,37:30:37:1.00:2	./.	0/1:0,24:31:24:1.00:2	0/1:3,32:31:35:0.914:2	0/1:22,4:32:26:0.154:2	./.	0/1:16,12:30:28:0.429:2
chr9	116931737	rs2808771	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,10:31:35:0.286:2	./.	0/1:0,25:30:25:1.00:2	0/1:2,30:30:32:0.938:2	./.	./.	0/1:14,7:31:21:0.333:2
chr9	116940594	rs3810930	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,89:33:184:0.484:2	./.	./.	./.	./.	./.
chr9	116958214	rs2567710	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:31,25:31:56:0.446:2	0/1:24,22:32:46:0.478:2	./.	./.	./.	./.	./.	0/1:71,46:31:117:0.393:2	./.	./.	0/1:62,39:30:101:0.386:2
chr9	116958216	rs2567711	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:31:55:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,13:31:13:1.00:2	0/1:43,40:30:83:0.482:2	0/1:0,101:31:101:1.00:2	0/1:1,88:30:89:0.989:2	0/1:0,107:31:107:1.00:2	0/1:71,48:31:119:0.403:2	0/1:1,99:31:100:0.990:2	./.	0/1:0,100:31:101:1.00:2
chr9	116967405	rs13290696	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,30:33:60:0.500:2	./.	./.	0/1:15,12:31:27:0.444:2
chr9	116968512	rs41312204	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,20:32:34:0.588:2	./.	./.	./.	./.	0/1:106,85:32:191:0.445:2	0/1:92,104:33:196:0.531:2	./.	0/1:92,95:32:187:0.508:2
chr9	116968576	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:32:123:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	116973273	rs34350265	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,49:32:104:0.471:2	0/1:51,40:31:92:0.440:2	./.	0/1:46,39:31:85:0.459:2
chr9	116980052	rs10982110	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:31:34:1.00:2	0/1:0,23:32:23:1.00:2	0/1:1,4:31:5:0.800:2	0/1:30,27:31:57:0.474:2	0/1:54,16:31:70:0.229:2	0/1:0,36:30:36:1.00:2	0/1:6,55:31:61:0.902:2	0/1:35,26:30:61:0.426:2	0/1:25,34:33:59:0.576:2	0/1:0,45:31:45:1.00:2	0/1:36,32:32:68:0.471:2
chr9	116980089	rs16927409	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,21:32:45:0.467:2	0/1:30,12:32:42:0.286:2	./.	0/1:22,26:31:48:0.542:2
chr9	117002517	rs2014134	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,23:32:23:1.00:2	0/1:0,11:31:11:1.00:2	./.	./.	0/1:25,15:30:40:0.375:2	0/1:14,20:31:35:0.588:2	0/1:0,46:31:46:1.00:2	./.	./.	0/1:0,24:31:24:1.00:2	0/1:24,24:31:48:0.500:2
chr9	117002787	rs41305461	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:31:11:0.545:2	./.	./.	./.	./.	./.	./.	./.
chr9	117014868	rs191152162	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,75:30:152:0.493:2	./.	./.	./.
chr9	117033022	rs4143245	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,67:31:68:0.985:2	0/1:0,39:28:40:1.00:2	./.	./.	./.	0/1:72,48:30:120:0.400:2	./.	0/1:59,54:29:113:0.478:2	0/1:54,52:31:106:0.491:2	0/1:56,34:31:90:0.378:2	0/1:0,84:30:84:1.00:2
chr9	117044538	rs2636879	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,6:31:10:0.600:2	0/1:0,74:31:74:1.00:2	./.	./.	./.	0/1:50,45:30:95:0.474:2	0/1:39,37:32:76:0.487:2	./.	./.
chr9	117044751	rs2787330	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,41:32:88:0.471:2	0/1:28,20:32:48:0.417:2	0/1:0,11:32:11:1.00:2	0/1:0,112:32:112:1.00:2	0/1:84,80:31:164:0.488:2	0/1:0,119:32:119:1.00:2	0/1:99,73:32:172:0.424:2	0/1:92,64:32:156:0.410:2	0/1:2,101:32:103:0.981:2	0/1:0,70:31:70:1.00:2	0/1:0,76:32:76:1.00:2
chr9	117050998	rs10982134	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,26:31:65:0.400:2	0/1:49,30:30:79:0.380:2	0/1:78,4:32:82:0.049:2	0/1:48,25:32:73:0.342:2	./.	0/1:32,24:32:56:0.429:2	./.
chr9	117051020	rs1687410	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:30:5:0.600:2	0/1:36,34:31:70:0.486:2	./.	./.	./.	./.	./.	./.	./.
chr9	117051202	rs1687409	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,5:33:113:0.044:2	./.	./.	./.
chr9	117051271	rs10817583	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,21:28:45:0.467:2	./.	./.	./.	./.	./.	./.	./.
chr9	117051586	rs72762675	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,5:31:19:0.263:2	0/1:24,13:30:37:0.351:2	./.	0/1:24,16:31:40:0.400:2	./.	0/1:19,11:29:30:0.367:2	./.
chr9	117063396	rs73656040	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,21:32:47:0.447:2
chr9	117063778	rs111895877	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,5:26:10:0.500:2	0/1:3,3:32:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	117064345	rs1546048	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,21:31:52:0.404:2	0/1:13,10:33:23:0.435:2	0/1:6,3:31:9:0.333:2	0/1:23,20:32:43:0.465:2	0/1:10,12:29:22:0.545:2	./.	0/1:0,47:32:47:1.00:2	0/1:0,76:31:76:1.00:2	./.	0/1:0,56:31:56:1.00:2	./.
chr9	117064405	rs10817586	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:23,30:32:53:0.566:2	0/1:12,13:31:25:0.520:2	./.	0/1:1,46:33:47:0.979:2	./.	0/1:0,36:32:36:1.00:2	0/1:22,18:33:40:0.450:2	./.	0/1:0,43:33:43:1.00:2	0/1:33,29:32:62:0.468:2	0/1:44,26:32:70:0.371:2
chr9	117085526	rs147960186	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:141,48:33:189:0.254:2	0/1:111,71:32:182:0.390:2	0/1:73,31:32:104:0.298:2	0/1:64,123:32:188:0.658:2	./.	0/1:36,152:32:188:0.809:2	0/1:132,64:33:196:0.327:2	0/1:40,150:33:190:0.789:2	0/1:123,67:33:190:0.353:2	0/1:57,129:33:186:0.694:2	0/1:60,122:33:182:0.670:2
chr9	117086035	rs138003853	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,18:27:136:0.132:2
chr9	117087351	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:33:56:0.071:2	./.	./.	./.	./.	./.
chr9	117087412	rs1126801	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,48:31:50:0.960:2	./.	./.	./.	./.	./.
chr9	117092297	rs147969317	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:151,23:32:174:0.132:2	0/1:153,24:33:177:0.136:2	0/1:81,11:31:92:0.120:2	0/1:123,66:32:189:0.349:2	./.	0/1:112,75:32:189:0.401:2	0/1:164,30:32:194:0.155:2	0/1:101,90:32:191:0.471:2	0/1:166,26:33:192:0.135:2	0/1:133,55:33:188:0.293:2	0/1:135,45:33:180:0.250:2
chr9	117093948	rs147918827	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:153,5:30:159:0.032:2	./.	./.	0/1:129,4:32:133:0.030:2	./.	./.	./.
chr9	117103973	rs2250242	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,22:32:48:0.458:2	0/1:13,12:32:25:0.480:2	./.	0/1:0,49:32:49:1.00:2	0/1:35,22:32:57:0.386:2	0/1:20,27:31:47:0.574:2	0/1:31,36:31:67:0.537:2	0/1:33,30:32:63:0.476:2	0/1:27,39:33:66:0.591:2	0/1:0,37:30:37:1.00:2	0/1:23,20:32:43:0.465:2
chr9	117110002	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,7:15:32:0.219:2	./.	./.	./.
chr9	117110046	rs3748178	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,6:30:13:0.462:2	0/1:9,9:32:18:0.500:2	./.	0/1:6,6:32:12:0.500:2
chr9	117110115	rs200970909	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,5:20:30:0.172:2	./.	./.	0/1:36,12:11:48:0.250:2	0/1:53,11:12:64:0.172:2	0/1:40,10:13:50:0.200:2	0/1:46,13:11:59:0.220:2	0/1:66,15:13:81:0.185:2	./.	0/1:26,8:17:34:0.235:2	./.
chr9	117121912	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:31:74:0.054:2	./.	./.	./.	./.	./.
chr9	117122202	rs3748177	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:52,37:31:89:0.416:2	0/1:25,25:31:50:0.500:2	0/1:1,4:26:5:0.800:2	./.	0/1:78,67:31:145:0.462:2	0/1:73,44:30:117:0.376:2	0/1:102,81:31:183:0.443:2	0/1:1,145:31:146:0.993:2	0/1:58,51:32:109:0.468:2	./.	0/1:0,73:31:74:1.00:2
chr9	117124045	rs45550039	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,32:31:75:0.427:2	./.	./.
chr9	117124731	rs3748176	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:14,8:33:22:0.364:2	0/1:7,5:33:12:0.417:2	0/1:0,3:32:3:1.00:2	./.	0/1:11,14:31:25:0.560:2	0/1:17,19:32:36:0.528:2	0/1:12,4:32:16:0.250:2	0/1:5,41:33:46:0.891:2	0/1:9,5:29:14:0.357:2	./.	0/1:0,18:31:18:1.00:2
chr9	117139142	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,5:28:150:0.033:2	./.
chr9	117139280	rs41306498	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:27:15:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	117166206	rs2274158	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,13:32:43:0.302:2	./.	./.	0/1:15,9:33:24:0.375:2
chr9	117166246	rs2274159	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,17:27:47:0.362:2	0/1:34,17:28:51:0.333:2	./.	0/1:3,42:28:45:0.933:2	0/1:26,13:31:39:0.333:2	./.	0/1:0,23:30:23:1.00:2
chr9	117166311	rs34963246	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,18:30:41:0.439:2	./.	./.	./.	./.
chr9	117166338	rs6478078	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:33:35:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,44:33:44:1.00:2	0/1:0,30:34:30:1.00:2	0/1:0,37:33:37:1.00:2	0/1:0,25:32:25:1.00:2
chr9	117169033	rs942519	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:30:8:0.625:2	./.	0/1:50,28:27:78:0.359:2	0/1:48,38:29:86:0.442:2	./.	0/1:1,71:27:72:0.986:2	0/1:45,45:30:90:0.500:2	./.	0/1:2,40:28:42:0.952:2
chr9	117170241	rs12339210	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,62:30:110:0.564:2	./.	./.	0/1:56,37:29:93:0.398:2
chr9	117170310	rs2274160	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,24:31:72:0.333:2	0/1:55,15:32:70:0.214:2	./.	./.	./.	./.
chr9	117185705	rs34252199	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,15:31:17:0.882:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	117186677	rs4979387	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:29:89:1.00:2	0/1:0,45:29:45:1.00:2	0/1:9,10:30:19:0.526:2	0/1:2,148:30:150:0.987:2	0/1:0,162:31:162:1.00:2	0/1:82,82:30:164:0.500:2	0/1:83,63:32:146:0.432:2	0/1:2,145:30:147:0.986:2	0/1:81,65:29:146:0.445:2	0/1:1,103:29:104:0.990:2	0/1:1,70:29:71:0.986:2
chr9	117186712	rs4978584	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,49:30:122:0.402:2	./.	./.	0/1:32,29:29:61:0.475:2
chr9	117188566	rs10817610	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:31:53:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,64:30:64:1.00:2	0/1:0,88:30:88:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,104:31:104:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,61:31:61:1.00:2
chr9	117240774	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:32:54:0.074:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	117266855	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,4:31:30:0.133:2	./.	./.	./.
chr9	117266965	rs2297815	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:28:5:0.600:2	./.	0/1:1,7:28:8:0.875:2	0/1:8,4:26:12:0.333:2	./.	0/1:2,6:29:8:0.750:2	./.	./.	./.
chr9	117399263	rs41278669	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,5:32:8:0.625:2	0/1:71,59:33:130:0.454:2	./.	./.	./.	0/1:57,45:32:103:0.441:2	0/1:63,58:33:121:0.479:2	./.	./.
chr9	117552885	rs3810936	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,176:32:176:1.00:2	0/1:0,149:32:149:1.00:2	0/1:17,27:31:44:0.614:2	0/1:0,186:32:186:1.00:2	0/1:1,180:32:181:0.994:2	0/1:0,173:32:173:1.00:2	0/1:94,93:32:187:0.497:2	0/1:2,192:32:194:0.990:2	0/1:1,182:33:183:0.995:2	0/1:93,87:32:181:0.483:2	0/1:1,186:31:187:0.995:2
chr9	117553249	rs4246905	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,24:30:24:1.00:2	0/1:0,5:28:5:1.00:2	./.	0/1:0,37:30:37:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,22:29:22:1.00:2	0/1:17,8:24:26:0.320:2	0/1:0,20:31:20:1.00:2	0/1:0,22:30:22:1.00:2	0/1:19,14:30:33:0.424:2	0/1:0,37:30:37:1.00:2
chr9	117668142	rs3181195	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,43:32:80:0.538:2	0/1:25,21:32:46:0.457:2	0/1:0,12:32:12:1.00:2	0/1:50,52:32:102:0.510:2	0/1:0,31:32:31:1.00:2	0/1:2,92:32:94:0.979:2	0/1:1,51:32:52:0.981:2	0/1:48,35:32:83:0.422:2	0/1:51,39:34:90:0.433:2	0/1:40,38:32:78:0.487:2	0/1:69,71:32:140:0.507:2
chr9	117792583	rs13321	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,27:32:54:0.500:2	0/1:19,23:32:42:0.548:2	0/1:0,10:31:10:1.00:2	0/1:39,27:33:66:0.409:2	0/1:0,53:32:53:1.00:2	0/1:0,76:32:76:1.00:2	0/1:1,75:32:76:0.987:2	0/1:45,37:33:82:0.451:2	./.	0/1:28,24:33:52:0.462:2	0/1:0,69:33:69:1.00:2
chr9	117797508	rs368349567	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,12:33:37:0.324:2	0/1:5,13:31:18:0.722:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	117797597	rs12347433	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,10:32:22:0.455:2	0/1:13,27:31:40:0.675:2	./.	0/1:16,15:32:31:0.484:2	./.	./.	./.	0/1:0,27:32:27:1.00:2
chr9	117803271	rs2274750	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,38:31:102:0.376:2	0/1:26,27:30:53:0.509:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	117804544	rs1061495	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,19:31:37:0.514:2	0/1:15,11:29:26:0.423:2	0/1:4,5:32:9:0.556:2	0/1:26,30:29:56:0.536:2	./.	./.	./.	0/1:36,36:30:72:0.500:2	./.	./.	0/1:33,21:29:54:0.389:2
chr9	117808785	rs2104772	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:95,98:33:193:0.508:2	0/1:56,54:32:110:0.491:2	0/1:15,9:32:24:0.375:2	./.	0/1:2,97:31:99:0.980:2	./.	0/1:86,65:32:151:0.430:2	0/1:109,74:32:183:0.404:2	./.	./.	0/1:99,95:32:194:0.490:2
chr9	117819436	rs17819466	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,54:31:54:1.00:2	./.	./.	./.	0/1:19,15:32:34:0.441:2	./.
chr9	117826096	rs113301777	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,68:30:154:0.442:2	./.	./.	./.	0/1:73,44:30:117:0.376:2	./.
chr9	117826124	rs139931208	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,74:32:130:0.569:2	0/1:85,68:32:153:0.444:2	./.	./.	./.
chr9	117835899	rs1138545	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,4:32:15:0.267:2	0/1:80,75:31:155:0.484:2	0/1:98,65:32:163:0.399:2	./.	./.	./.	./.	./.	./.
chr9	117838696	rs77983149	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:109,19:14:128:0.148:2	./.	./.	0/1:105,25:18:130:0.192:2	0/1:131,23:18:154:0.149:2	0/1:121,21:15:142:0.148:2	0/1:119,25:18:144:0.174:2	0/1:117,19:17:136:0.140:2	0/1:123,26:20:149:0.174:2	0/1:127,25:17:152:0.164:2	0/1:107,28:22:135:0.207:2
chr9	117840334	rs61739209	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,96:31:173:0.555:2	./.	./.	./.	./.	./.	./.	./.
chr9	117846570	rs2274836	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:28,20:31:48:0.417:2	0/1:13,15:32:28:0.536:2	0/1:5,6:30:11:0.545:2	./.	0/1:39,26:30:65:0.400:2	./.	0/1:47,42:31:89:0.472:2	./.	0/1:0,63:32:63:1.00:2	0/1:32,34:32:66:0.515:2	./.
chr9	117846580	rs1061494	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,24:30:47:0.511:2	0/1:17,12:29:29:0.414:2	0/1:7,6:30:13:0.462:2	0/1:1,71:30:72:0.986:2	./.	0/1:1,72:30:73:0.986:2	./.	0/1:51,40:30:91:0.440:2	./.	0/1:35,31:29:66:0.470:2	0/1:27,31:29:58:0.534:2
chr9	117848197	rs3827816	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,90:31:173:0.520:2	./.	./.	./.	./.
chr9	117848201	rs3827815	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,97:31:190:0.511:2	./.	0/1:95,79:32:174:0.454:2	0/1:97,64:32:161:0.398:2	./.	./.	0/1:63,45:31:108:0.417:2
chr9	117848368	rs61729478	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,125:32:125:1.00:2	./.	./.
chr9	117848394	rs1757095	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:29:81:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,9:27:9:1.00:2	0/1:1,128:29:129:0.992:2	0/1:0,146:29:146:1.00:2	0/1:0,104:30:104:1.00:2	0/1:1,127:30:128:0.992:2	0/1:77,61:29:139:0.442:2	0/1:0,109:30:109:1.00:2	0/1:0,74:30:74:1.00:2	0/1:0,75:29:75:1.00:2
chr9	117849170	rs200913956	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,14:20:122:0.115:2	0/1:123,18:19:141:0.128:2	0/1:104,16:16:120:0.133:2	0/1:129,12:16:141:0.085:2	0/1:117,19:17:136:0.140:2	0/1:92,14:15:107:0.132:2	./.	./.
chr9	117849314	rs2992147	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,52:32:106:0.491:2	0/1:32,19:32:51:0.373:2	0/1:6,5:32:11:0.455:2	0/1:0,126:32:126:1.00:2	./.	0/1:0,123:31:123:1.00:2	./.	0/1:90,80:32:170:0.471:2	./.	0/1:42,42:32:84:0.500:2	0/1:54,42:32:96:0.438:2
chr9	117853022	rs944510	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,40:31:76:0.526:2	0/1:18,32:31:50:0.640:2	0/1:12,8:29:20:0.400:2	0/1:0,104:31:104:1.00:2	./.	0/1:0,101:30:101:1.00:2	./.	0/1:60,48:30:108:0.444:2	./.	0/1:69,58:31:127:0.457:2	0/1:57,51:31:108:0.472:2
chr9	118163563	rs2269700	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:32:68:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,51:31:51:1.00:2	./.	0/1:32,28:30:60:0.467:2	0/1:36,26:32:62:0.419:2	0/1:53,36:32:89:0.404:2	0/1:0,97:33:97:1.00:2	./.	0/1:40,32:32:72:0.444:2
chr9	118949998	rs12375498	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,22:31:55:0.400:2	0/1:12,13:32:25:0.520:2	0/1:0,8:31:8:1.00:2	0/1:54,34:31:88:0.386:2	./.	./.	./.	0/1:44,30:32:75:0.405:2	./.	0/1:32,30:32:62:0.484:2	./.
chr9	119028233	rs117124330	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,39:29:89:0.438:2	./.	./.	./.	./.	./.	./.	./.
chr9	119065043	rs35565319	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,32:32:79:0.405:2	0/1:40,44:31:84:0.524:2	./.	./.	0/1:61,39:32:101:0.390:2
chr9	119106881	rs7020782	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:30:70:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,10:31:10:1.00:2	0/1:2,95:29:97:0.979:2	0/1:60,41:30:101:0.406:2	0/1:1,99:30:100:0.990:2	0/1:3,119:30:122:0.975:2	0/1:77,51:30:128:0.398:2	0/1:0,83:30:83:1.00:2	0/1:1,75:30:76:0.987:2	0/1:1,65:31:66:0.985:2
chr9	119106912	rs142033727	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,63:31:134:0.470:2	./.	./.	./.	./.	./.	./.
chr9	119158814	rs8456	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,56:32:60:0.933:2	0/1:0,25:31:25:1.00:2	0/1:3,3:32:6:0.500:2	0/1:54,12:32:66:0.182:2	0/1:0,60:31:60:1.00:2	0/1:0,73:32:73:1.00:2	0/1:49,28:32:77:0.364:2	0/1:0,78:32:78:1.00:2	0/1:59,38:33:97:0.392:2	0/1:48,29:33:77:0.377:2	0/1:0,86:32:86:1.00:2
chr9	119187839	rs7518	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,22:31:38:0.579:2	./.	./.	0/1:21,19:32:40:0.475:2	./.	0/1:32,37:32:69:0.536:2	0/1:22,15:32:37:0.405:2	./.
chr9	119199820	rs7018569	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:30:32:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,21:29:21:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,25:29:25:1.00:2	0/1:0,52:29:52:1.00:2
chr9	119380687	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,5:30:81:0.062:2	./.	./.	./.	./.	./.	./.
chr9	119461033	rs141806013	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,20:29:28:0.714:2	./.	./.	./.	./.	./.
chr9	119461243	rs3747835	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,30:32:63:0.476:2	./.	./.	./.
chr9	119461275	rs1661300	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:29,21:31:50:0.420:2	0/1:18,18:31:36:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:34,30:31:64:0.469:2	./.
chr9	119462112	rs3019	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,120:31:120:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,111:30:111:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,119:30:119:1.00:2	./.	0/1:0,114:30:114:1.00:2	0/1:0,121:31:121:1.00:2	0/1:0,115:30:115:1.00:2	0/1:0,143:31:143:1.00:2
chr9	119463189	rs2281627	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,18:33:33:0.545:2	0/1:11,9:31:20:0.450:2	./.	./.	./.	./.	./.	./.	0/1:20,13:32:33:0.394:2	./.	./.
chr9	119495697	rs7863560	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:28:59:1.00:2	0/1:0,23:28:23:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,70:29:70:1.00:2	0/1:0,53:28:53:1.00:2	0/1:0,72:28:72:1.00:2	0/1:0,78:29:78:1.00:2	0/1:0,85:29:85:1.00:2	0/1:0,81:30:81:1.00:2	0/1:0,60:28:60:1.00:2	0/1:0,80:28:80:1.00:2
chr9	119770480	rs3761845	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,76:33:77:0.987:2	0/1:0,54:32:54:1.00:2	./.	0/1:79,37:31:116:0.319:2	0/1:0,61:32:61:1.00:2	./.	0/1:59,28:33:87:0.322:2	0/1:0,105:33:105:1.00:2	0/1:0,75:34:75:1.00:2	0/1:58,31:33:89:0.348:2	0/1:0,92:33:92:1.00:2
chr9	120053776	rs7848630	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:29:42:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,48:28:48:1.00:2	0/1:0,79:28:80:1.00:2	0/1:0,63:28:63:1.00:2	0/1:0,66:29:66:1.00:2	0/1:0,87:29:87:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,32:27:32:1.00:2	0/1:0,46:28:46:1.00:2
chr9	120470870	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:33:150:0.027:2
chr9	120475602	rs4986791	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,31:31:55:0.564:2	./.	./.	./.	./.	./.	./.
chr9	121929575	rs28453	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,40:30:112:0.357:2	0/1:43,32:30:75:0.427:2	./.	./.	./.	./.	./.
chr9	121930307	rs1043379	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:31:8:0.750:2	./.	./.	./.	0/1:50,71:31:121:0.587:2	./.	./.	./.	./.
chr9	121976291	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:31:78:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	122001000	rs2274157	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:74,56:31:130:0.431:2	0/1:30,36:32:66:0.545:2	./.	0/1:153,6:31:159:0.038:2	0/1:82,54:30:136:0.397:2	0/1:65,50:31:115:0.435:2	0/1:93,57:31:150:0.380:2	./.	./.	0/1:79,76:31:155:0.490:2	0/1:79,62:31:141:0.440:2
chr9	122075586	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:33:76:0.053:2	./.	./.
chr9	123170733	rs4837768	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:32:66:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,9:33:9:1.00:2	0/1:30,38:33:68:0.559:2	0/1:0,64:32:64:1.00:2	0/1:0,88:32:88:1.00:2	0/1:84,6:31:90:0.067:2	0/1:38,43:32:81:0.531:2	0/1:1,56:33:57:0.982:2	0/1:0,71:32:71:1.00:2	0/1:0,74:32:75:1.00:2
chr9	123201844	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:131,4:31:135:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr9	123206019	rs374650359	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	123220829	rs2501727	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,78:34:155:0.503:2	./.	./.
chr9	123239643	rs41296081	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,55:30:119:0.466:2	./.	./.	./.	./.	./.	./.	./.
chr9	123239646	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:32:158:0.025:2	./.	./.	./.	./.	./.
chr9	123287277	rs145165171	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,47:31:96:0.490:2	./.	./.	./.	./.	./.
chr9	123291036	rs4836822	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:34:76:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,11:34:11:1.00:2	0/1:1,71:33:72:0.986:2	0/1:0,49:32:49:1.00:2	0/1:0,72:32:72:1.00:2	0/1:2,66:33:68:0.971:2	0/1:2,85:33:87:0.977:2	0/1:18,40:34:58:0.690:2	0/1:0,69:34:69:1.00:2	0/1:0,76:33:76:1.00:2
chr9	123301346	rs3750494	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,53:34:120:0.442:2	./.	./.
chr9	123301414	rs61756286	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,11:32:20:0.550:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	123313120	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,4:31:59:0.068:2	./.	./.	./.	./.	./.	./.	./.
chr9	123342259	rs932975	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:31:79:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,132:30:132:1.00:2	0/1:0,117:30:117:1.00:2	0/1:0,135:30:135:1.00:2	0/1:0,112:31:112:1.00:2	0/1:0,125:30:125:1.00:2	0/1:0,131:32:131:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,97:31:98:1.00:2
chr9	123342275	rs932974	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:31:62:1.00:2	0/1:0,32:29:32:1.00:2	0/1:0,6:32:6:1.00:2	0/1:1,104:30:106:0.990:2	0/1:0,90:30:90:1.00:2	0/1:1,104:30:105:0.990:2	0/1:1,91:30:92:0.989:2	0/1:0,95:30:95:1.00:2	0/1:1,104:31:105:0.990:2	0/1:0,40:29:40:1.00:2	0/1:0,75:29:75:1.00:2
chr9	123367681	rs56019987	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:78,51:29:129:0.395:2	0/1:40,37:29:77:0.481:2	0/1:4,5:29:9:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	123476257	rs149898889	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:30:6:0.500:2
chr9	123583192	rs1060817	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,29:31:58:0.500:2	0/1:22,17:33:39:0.436:2	./.	0/1:35,29:32:64:0.453:2	0/1:32,14:32:46:0.304:2	0/1:20,21:31:41:0.512:2	0/1:1,29:32:30:0.967:2	0/1:1,61:32:62:0.984:2	0/1:20,25:32:45:0.556:2	0/1:1,35:32:36:0.972:2	0/1:2,56:31:58:0.966:2
chr9	123586737	rs10760117	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,26:33:46:0.565:2	0/1:15,17:33:32:0.531:2	0/1:0,6:32:6:1.00:2	0/1:36,24:33:60:0.400:2	0/1:21,22:32:43:0.512:2	0/1:28,32:32:60:0.533:2	0/1:0,27:32:27:1.00:2	0/1:0,49:32:49:1.00:2	0/1:17,40:33:57:0.702:2	0/1:0,29:31:29:1.00:2	0/1:0,81:32:81:1.00:2
chr9	123626311	rs10985064	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:44,38:30:82:0.463:2	0/1:21,20:30:42:0.488:2	./.	0/1:63,44:30:107:0.411:2	./.	0/1:56,43:31:100:0.434:2	./.	./.	./.	./.	./.
chr9	123631561	rs41273396	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,71:32:140:0.507:2	./.	./.	./.
chr9	123632045	rs1056567	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,61:31:62:0.984:2	0/1:0,44:32:44:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,67:33:67:1.00:2	0/1:48,53:31:101:0.525:2	0/1:0,75:32:75:1.00:2	0/1:1,87:31:88:0.989:2	0/1:0,112:32:112:1.00:2	0/1:28,36:32:64:0.563:2	0/1:0,83:32:83:1.00:2	0/1:0,58:31:58:1.00:2
chr9	123632181	.	T	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:58,5:27:63:0.079:2	./.	./.	0/1:66,11:16:77:0.143:2	0/1:103,17:15:120:0.142:2	./.	0/1:80,9:21:89:0.101:2	0/1:98,10:17:108:0.093:2	./.	./.	./.
chr9	123671520	rs2239657	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:32:77:1.00:2	0/1:0,40:32:40:1.00:2	0/1:9,5:31:14:0.357:2	0/1:66,46:31:112:0.411:2	0/1:0,154:32:154:1.00:2	0/1:77,79:32:156:0.506:2	0/1:1,125:31:126:0.992:2	0/1:86,81:31:167:0.485:2	0/1:60,47:33:107:0.439:2	0/1:0,90:32:90:1.00:2	0/1:0,105:32:105:1.00:2
chr9	123675895	rs113495277	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,7:29:21:0.333:2	./.	./.	./.	./.
chr9	123722581	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:32:181:0.022:2
chr9	123769200	rs17611	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:13,18:31:31:0.581:2	0/1:14,15:31:29:0.517:2	0/1:1,4:28:5:0.800:2	./.	0/1:0,19:32:19:1.00:2	0/1:26,13:31:39:0.333:2	0/1:0,30:32:30:1.00:2	./.	./.	0/1:0,61:32:61:1.00:2	0/1:44,30:32:74:0.405:2
chr9	123780005	rs25681	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:36,22:32:58:0.379:2	0/1:20,10:31:30:0.333:2	0/1:2,5:30:7:0.714:2	./.	0/1:1,35:30:36:0.972:2	0/1:49,37:30:86:0.430:2	0/1:0,51:31:51:1.00:2	./.	./.	0/1:0,50:31:50:1.00:2	0/1:41,36:32:77:0.468:2
chr9	123782299	rs2230214	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,4:31:56:0.071:2	./.	./.	./.	0/1:57,29:33:86:0.337:2	./.	./.
chr9	123783934	rs10985126	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,89:32:190:0.468:2	./.	./.	./.	./.	0/1:116,76:33:192:0.396:2	./.	./.
chr9	123800218	rs17216529	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,34:32:66:0.515:2	./.	./.	./.	./.	./.	./.	./.
chr9	123805380	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,4:28:54:0.074:2	./.	./.	./.	./.	./.	./.	./.
chr9	123850770	rs10818503	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:75,50:32:125:0.400:2	0/1:74,46:31:120:0.383:2	0/1:12,11:31:23:0.478:2	0/1:79,83:31:162:0.512:2	0/1:0,105:31:105:1.00:2	0/1:69,65:31:134:0.485:2	0/1:0,104:31:104:1.00:2	0/1:89,74:31:163:0.454:2	0/1:0,152:33:152:1.00:2	0/1:2,102:31:104:0.981:2	0/1:0,147:32:147:1.00:2
chr9	123860689	rs10818504	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,17:32:34:0.500:2	0/1:9,16:33:25:0.640:2	./.	./.	0/1:0,25:32:25:1.00:2	0/1:29,21:32:50:0.420:2	0/1:0,50:32:50:1.00:2	./.	./.	0/1:0,42:32:42:1.00:2	0/1:37,46:33:83:0.554:2
chr9	123875921	rs77083332	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,13:33:17:0.765:2	./.	./.	./.	./.	./.
chr9	123917020	rs3736855	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:26,21:31:47:0.447:2	0/1:13,4:30:17:0.235:2	./.	./.	0/1:1,25:28:26:0.962:2	0/1:11,14:29:25:0.560:2	0/1:2,26:28:28:0.929:2	./.	./.	0/1:2,21:31:23:0.913:2	0/1:37,27:31:64:0.422:2
chr9	123929770	rs61745682	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,5:29:17:0.294:2	0/1:55,64:33:119:0.538:2	./.	./.	./.	0/1:71,86:32:157:0.548:2	0/1:88,73:33:161:0.453:2	./.	0/1:58,44:32:103:0.431:2
chr9	123932039	rs72760254	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,22:33:39:0.564:2	./.	./.
chr9	124043867	rs10985200	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,68:30:124:0.548:2	0/1:47,32:30:79:0.405:2	0/1:64,54:30:118:0.458:2	0/1:72,52:31:124:0.419:2	./.	0/1:0,87:31:87:1.00:2	0/1:55,47:31:102:0.461:2
chr9	124044995	rs3810942	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,39:32:70:0.557:2	0/1:45,44:32:89:0.494:2	0/1:44,36:32:80:0.450:2	0/1:59,43:32:102:0.422:2	./.	0/1:2,86:33:88:0.977:2	0/1:46,53:33:99:0.535:2
chr9	124045336	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:30:128:0.031:2	./.
chr9	124045958	rs4837829	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,12:32:56:0.214:2	0/1:37,20:32:57:0.351:2	0/1:39,28:33:67:0.418:2	0/1:52,22:33:74:0.297:2	./.	0/1:1,34:32:35:0.971:2	0/1:36,20:33:56:0.357:2
chr9	124045971	rs4837830	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,8:31:51:0.157:2	0/1:43,9:30:52:0.173:2	0/1:45,13:30:59:0.224:2	0/1:62,9:30:71:0.127:2	./.	0/1:11,22:30:33:0.667:2	0/1:46,8:28:55:0.148:2
chr9	124045972	rs4837831	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,8:30:53:0.151:2	0/1:46,9:30:55:0.164:2	0/1:55,13:30:68:0.191:2	0/1:63,9:29:72:0.125:2	./.	0/1:29,22:30:51:0.431:2	0/1:54,8:32:62:0.129:2
chr9	124045974	rs78220606	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,6:33:45:0.133:2	0/1:34,16:32:50:0.320:2	0/1:51,9:29:60:0.150:2	0/1:56,12:32:68:0.176:2	./.	0/1:23,10:32:33:0.303:2	0/1:43,11:33:54:0.204:2
chr9	124046537	rs181405494	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,63:31:119:0.529:2	./.	./.	./.	./.	./.
chr9	124046691	rs55716465	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,28:31:65:0.431:2	0/1:34,19:30:53:0.358:2	./.	./.	./.	0/1:26,34:32:60:0.567:2	./.	./.
chr9	124046722	rs3827678	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,22:32:40:0.564:2	0/1:25,19:32:44:0.432:2	0/1:10,19:32:30:0.655:2	0/1:18,24:33:42:0.571:2	./.	0/1:0,46:32:46:1.00:2	0/1:25,15:33:40:0.375:2
chr9	124047019	rs117409177	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,35:32:73:0.479:2	./.
chr9	124047056	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:30:83:0.048:2
chr9	124047237	rs7046030	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,7:32:14:0.500:2	0/1:70,64:32:134:0.478:2	0/1:85,72:32:157:0.459:2	./.	./.	./.	0/1:82,65:33:147:0.442:2	./.	./.
chr9	124047246	rs913767	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:164,4:33:168:0.024:2	./.	0/1:7,9:34:16:0.563:2	0/1:64,58:33:122:0.475:2	0/1:0,151:33:151:1.00:2	0/1:62,64:32:126:0.508:2	0/1:68,77:33:145:0.531:2	0/1:98,70:33:168:0.417:2	0/1:77,65:34:142:0.458:2	0/1:0,147:33:147:1.00:2	0/1:78,60:33:138:0.435:2
chr9	124065198	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:30:64:0.065:2	./.	./.
chr9	124083614	rs2304393	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,29:30:64:0.453:2	./.	0/1:43,23:31:66:0.348:2	./.	./.	./.	./.
chr9	124093750	rs371780814	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,3:36:11:0.273:2	./.	./.	./.	./.	./.	./.
chr9	124103576	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:34:147:0.027:2
chr9	124522305	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,60:30:179:0.335:2	./.	./.
chr9	124522546	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:35:70:0.057:2	./.	./.
chr9	124535478	rs191595599	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,6:32:6:1.00:2
chr9	124914613	rs4679	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,27:32:62:0.435:2	0/1:20,20:31:40:0.500:2	0/1:0,4:31:4:1.00:2	0/1:32,40:32:72:0.556:2	0/1:24,38:31:63:0.613:2	./.	0/1:1,54:31:55:0.982:2	0/1:0,59:31:59:1.00:2	0/1:56,34:32:90:0.378:2	0/1:0,52:31:52:1.00:2	0/1:35,42:31:77:0.545:2
chr9	124931957	rs41302655	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,26:31:66:0.400:2	./.
chr9	124971946	rs41273919	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,29:30:55:0.527:2	./.
chr9	125033303	rs149753530	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,5:28:152:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	125042736	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:31:158:0.025:2	./.	./.	./.
chr9	125042761	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:32:158:0.025:2	./.	./.	./.
chr9	125042771	rs149296425	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,5:31:153:0.033:2	./.	./.	./.
chr9	125133479	rs1236913	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,21:27:21:1.00:2	0/1:0,3:27:3:1.00:2	./.	0/1:11,24:28:35:0.686:2	0/1:0,16:26:16:1.00:2	0/1:0,21:27:21:1.00:2	0/1:0,17:29:17:1.00:2	0/1:0,45:26:45:1.00:2	0/1:0,19:29:19:1.00:2	0/1:0,25:26:25:1.00:2	0/1:10,3:26:13:0.231:2
chr9	125140267	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:32:89:0.045:2	./.	./.	./.	./.
chr9	125140823	rs5787	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:32:12:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	125143792	rs5788	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:74,44:31:118:0.373:2	./.	./.	./.	./.	./.	0/1:87,67:31:154:0.435:2
chr9	125143973	rs5789	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,26:31:47:0.553:2
chr9	125152621	rs5794	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,28:31:60:0.467:2
chr9	125239253	rs1962091	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:32:7:0.429:2	0/1:11,12:32:23:0.522:2	./.	./.	0/1:9,15:34:24:0.625:2	./.	./.	./.	0/1:0,36:32:36:1.00:2
chr9	125240005	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:32:182:0.022:2	./.	./.	0/1:163,4:32:167:0.024:2
chr9	125240121	rs149776676	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:32:85:0.047:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	125240131	rs376132321	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:33:86:0.047:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	125240164	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:72,5:32:77:0.065:2	./.	./.	./.	0/1:70,5:29:75:0.067:2	./.	./.	./.	./.	./.	./.
chr9	125240175	rs147391208	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,48:32:82:0.585:2	./.	./.	./.
chr9	125273122	rs113674730	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,4:31:74:0.054:2	./.	./.	./.	./.	./.	./.
chr9	125273233	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:32:192:0.021:2
chr9	125273259	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,5:32:186:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	125273269	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,5:30:186:0.027:2
chr9	125273281	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2
chr9	125273297	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,5:33:188:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	125281999	rs145918200	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,75:33:191:0.393:2	./.	./.
chr9	125289033	rs41277122	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:47,40:33:87:0.460:2	0/1:37,24:32:61:0.393:2	./.	0/1:69,64:32:133:0.481:2	./.	./.	./.	./.	./.	./.	./.
chr9	125289083	rs16911867	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:34,28:31:64:0.452:2	0/1:23,16:32:39:0.410:2	./.	0/1:65,51:32:117:0.440:2	./.	0/1:41,42:30:84:0.506:2	./.	./.	./.	./.	./.
chr9	125289521	rs10818708	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,17:32:39:0.436:2	0/1:21,14:30:35:0.400:2	./.	0/1:2,57:31:59:0.966:2	0/1:26,16:30:42:0.381:2	0/1:2,49:31:51:0.961:2	./.	./.	./.	0/1:22,17:32:39:0.436:2	0/1:28,36:31:64:0.563:2
chr9	125315542	rs1831369	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:43,54:32:97:0.557:2	0/1:26,28:32:54:0.519:2	./.	0/1:48,37:31:85:0.435:2	./.	0/1:77,39:31:116:0.336:2	./.	./.	./.	./.	./.
chr9	125315557	rs1831370	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,86:30:87:0.989:2	0/1:1,48:29:49:0.980:2	./.	0/1:49,46:30:95:0.484:2	./.	0/1:78,43:29:121:0.355:2	0/1:2,113:30:115:0.983:2	0/1:81,70:29:152:0.464:2	0/1:65,64:29:129:0.496:2	0/1:47,42:30:89:0.472:2	0/1:52,62:29:115:0.544:2
chr9	125315778	rs1411271	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,117:33:118:0.992:2	0/1:0,68:32:68:1.00:2	./.	0/1:74,74:33:148:0.500:2	./.	0/1:79,76:32:155:0.490:2	0/1:1,166:33:167:0.994:2	0/1:102,97:33:199:0.487:2	0/1:88,64:34:152:0.421:2	0/1:69,72:33:141:0.511:2	0/1:74,74:33:148:0.500:2
chr9	125316028	rs41297203	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,63:32:125:0.504:2	./.	0/1:65,54:31:119:0.454:2	./.	./.	./.	0/1:73,80:32:153:0.523:2	0/1:68,82:32:150:0.547:2
chr9	125316033	rs1341042	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,168:32:169:0.994:2	0/1:2,114:31:116:0.983:2	./.	0/1:73,57:32:130:0.438:2	./.	0/1:70,53:32:123:0.431:2	0/1:2,147:31:149:0.987:2	0/1:70,74:32:144:0.514:2	0/1:90,68:32:158:0.430:2	0/1:92,73:31:165:0.442:2	0/1:86,66:32:152:0.434:2
chr9	125316042	rs1341043	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,163:32:164:0.994:2	0/1:2,126:32:128:0.984:2	./.	0/1:83,62:32:145:0.428:2	./.	0/1:79,64:32:143:0.448:2	0/1:3,154:32:157:0.981:2	0/1:78,82:32:160:0.513:2	0/1:98,66:33:164:0.402:2	0/1:96,74:32:170:0.435:2	0/1:94,73:32:167:0.437:2
chr9	125316179	rs1341044	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,182:32:182:1.00:2	0/1:0,159:32:159:1.00:2	./.	0/1:1,188:33:189:0.995:2	0/1:96,96:32:192:0.500:2	0/1:1,190:32:191:0.995:2	0/1:1,188:32:189:0.995:2	0/1:91,86:32:177:0.486:2	0/1:104,77:33:181:0.425:2	0/1:0,184:32:184:1.00:2	0/1:2,184:32:186:0.989:2
chr9	125316350	rs1411272	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,91:32:92:0.989:2	0/1:1,28:32:29:0.966:2	./.	0/1:29,33:31:62:0.532:2	./.	0/1:24,35:31:59:0.593:2	0/1:0,27:32:27:1.00:2	0/1:33,23:32:56:0.411:2	0/1:33,39:32:72:0.542:2	0/1:39,31:32:70:0.443:2	0/1:45,46:32:91:0.505:2
chr9	125330125	rs10739614	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,35:33:36:0.972:2	0/1:0,32:32:32:1.00:2	./.	0/1:24,19:31:44:0.442:2	0/1:24,19:32:43:0.442:2	0/1:35,27:32:62:0.435:2	0/1:0,45:33:45:1.00:2	0/1:24,29:32:53:0.547:2	0/1:25,31:33:57:0.554:2	0/1:29,34:32:63:0.540:2	0/1:29,36:32:65:0.554:2
chr9	125330184	rs10985702	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:25,33:29:59:0.569:2	0/1:17,22:29:39:0.564:2	./.	0/1:39,42:30:81:0.519:2	./.	0/1:57,59:30:116:0.509:2	./.	./.	./.	./.	./.
chr9	125330325	rs10985703	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:40,34:33:74:0.459:2	0/1:19,23:32:42:0.548:2	./.	0/1:67,67:32:135:0.500:2	./.	0/1:49,41:32:90:0.456:2	./.	0/1:152,4:33:156:0.026:2	./.	./.	./.
chr9	125330678	rs10985704	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,44:31:45:1.00:2	0/1:0,40:32:40:1.00:2	./.	0/1:31,19:31:50:0.380:2	0/1:21,31:29:52:0.596:2	0/1:12,18:32:30:0.600:2	0/1:0,43:32:43:1.00:2	0/1:42,23:31:65:0.354:2	0/1:31,26:33:57:0.456:2	0/1:23,25:32:48:0.521:2	0/1:32,32:29:64:0.500:2
chr9	125330739	rs1999182	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,54:29:54:1.00:2	0/1:0,39:31:39:1.00:2	./.	0/1:45,41:29:86:0.477:2	0/1:36,37:29:73:0.507:2	0/1:33,26:30:59:0.441:2	0/1:0,60:29:60:1.00:2	0/1:60,37:30:97:0.381:2	0/1:43,51:30:94:0.543:2	0/1:51,36:30:87:0.414:2	0/1:56,40:30:96:0.417:2
chr9	125377087	rs972925	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,113:29:116:0.983:2	0/1:0,59:29:59:1.00:2	0/1:0,20:26:20:1.00:2	0/1:85,86:29:171:0.503:2	0/1:98,95:29:193:0.492:2	0/1:102,88:29:190:0.463:2	0/1:1,190:29:191:0.995:2	0/1:1,178:29:179:0.994:2	0/1:109,81:28:190:0.426:2	0/1:76,70:29:146:0.479:2	./.
chr9	125377505	rs1329957	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,136:32:137:0.993:2	0/1:1,85:32:86:0.988:2	0/1:0,23:32:23:1.00:2	0/1:0,156:33:156:1.00:2	0/1:1,153:32:154:0.994:2	0/1:0,156:32:156:1.00:2	0/1:0,155:33:156:1.00:2	0/1:3,171:32:174:0.983:2	0/1:85,72:34:157:0.459:2	0/1:0,159:33:159:1.00:2	0/1:0,179:32:179:1.00:2
chr9	125390874	rs1556189	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,91:32:92:0.989:2	0/1:0,65:31:65:1.00:2	0/1:0,18:33:18:1.00:2	0/1:63,55:32:118:0.466:2	0/1:66,68:31:135:0.507:2	0/1:91,65:32:156:0.417:2	0/1:106,59:33:165:0.358:2	0/1:0,189:32:189:1.00:2	0/1:101,60:33:161:0.373:2	0/1:69,58:33:128:0.457:2	0/1:92,64:33:157:0.410:2
chr9	125391026	rs1476858	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:32:49:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,3:34:3:1.00:2	0/1:25,24:32:49:0.490:2	0/1:26,11:32:37:0.297:2	0/1:27,26:33:53:0.491:2	0/1:33,30:32:63:0.476:2	0/1:0,50:31:50:1.00:2	0/1:24,26:33:51:0.520:2	0/1:18,17:31:35:0.486:2	./.
chr9	125391127	rs1476859	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,11:30:32:0.344:2	0/1:23,7:30:30:0.233:2	./.	0/1:0,35:31:35:1.00:2	./.	./.	./.
chr9	125391241	rs1476860	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,23:31:46:0.500:2	0/1:28,32:32:60:0.533:2	./.	0/1:0,57:32:57:1.00:2	./.	./.	./.
chr9	125391369	rs1536929	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:29:29:1.00:2	0/1:0,23:28:23:1.00:2	0/1:0,7:31:7:1.00:2	0/1:32,21:30:53:0.396:2	0/1:29,33:29:62:0.532:2	0/1:26,21:30:47:0.447:2	0/1:48,41:30:89:0.461:2	0/1:0,46:29:46:1.00:2	0/1:31,23:30:54:0.426:2	0/1:14,20:30:35:0.588:2	./.
chr9	125391409	rs1536928	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,27:33:28:0.964:2	0/1:0,22:32:22:1.00:2	0/1:0,7:32:7:1.00:2	0/1:27,31:33:58:0.534:2	./.	./.	0/1:36,34:33:70:0.486:2	./.	0/1:34,31:33:65:0.477:2	0/1:24,22:33:46:0.478:2	./.
chr9	125391677	rs12347681	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,64:29:159:0.403:2	0/1:65,42:30:107:0.393:2	./.	0/1:3,134:29:137:0.978:2	./.	./.	./.
chr9	125424507	rs70156	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,83:31:151:0.550:2	0/1:95,79:32:174:0.454:2	0/1:147,4:32:151:0.026:2	0/1:95,97:32:192:0.505:2	0/1:78,89:33:167:0.533:2	./.	./.
chr9	125486411	rs199861911	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:30:130:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	125486542	rs143746640	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:122,43:32:165:0.261:2	0/1:87,25:32:112:0.223:2	./.	./.	./.	./.	0/1:107,46:32:153:0.301:2	./.	./.	0/1:118,41:31:159:0.258:2	./.
chr9	125486686	rs149895531	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:169,14:26:185:0.077:2	0/1:127,9:28:136:0.066:2	./.	./.	./.	./.	./.	./.	./.	0/1:169,5:29:174:0.029:2	./.
chr9	125486697	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:169,15:31:184:0.082:2	0/1:135,10:32:145:0.069:2	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	0/1:186,10:30:196:0.051:2	0/1:187,7:33:195:0.036:2
chr9	125486717	rs76170289	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:164,22:30:188:0.118:2	0/1:130,21:30:151:0.139:2	./.	0/1:179,12:29:191:0.063:2	0/1:190,7:30:197:0.036:2	./.	0/1:174,17:30:191:0.089:2	0/1:176,13:30:191:0.069:2	0/1:188,8:30:196:0.041:2	0/1:172,19:30:191:0.099:2	0/1:165,22:30:187:0.118:2
chr9	125486968	rs2215530	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,179:33:179:1.00:2	0/1:0,159:32:159:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,180:32:180:1.00:2	0/1:1,168:32:169:0.994:2	0/1:0,183:32:183:1.00:2	0/1:2,180:32:182:0.989:2	0/1:0,190:33:190:1.00:2	0/1:0,181:33:181:1.00:2	0/1:0,174:33:174:1.00:2	0/1:0,172:33:172:1.00:2
chr9	125487011	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:176,5:34:182:0.028:2	0/1:150,13:33:163:0.080:2	0/1:45,3:35:48:0.063:2	0/1:171,11:31:182:0.060:2	0/1:184,7:33:191:0.037:2	0/1:174,14:31:188:0.074:2	./.	0/1:186,6:33:192:0.031:2	0/1:186,6:34:192:0.031:2	./.	0/1:176,8:33:186:0.043:2
chr9	125512193	rs10760252	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,163:31:163:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,193:30:193:1.00:2	0/1:0,190:30:190:1.00:2	0/1:0,192:30:192:1.00:2	0/1:0,189:30:189:1.00:2	0/1:0,196:30:196:1.00:2	0/1:0,183:31:183:1.00:2	0/1:0,175:30:175:1.00:2	0/1:0,184:31:184:1.00:2
chr9	125512408	rs41309328	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:77,13:31:90:0.144:2	0/1:41,5:27:46:0.109:2	./.	./.	./.	./.	0/1:51,6:32:57:0.105:2	./.	./.	0/1:68,7:31:75:0.093:2	./.
chr9	125512441	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:67,5:28:72:0.069:2	0/1:42,4:33:46:0.087:2	./.	./.	./.	./.	0/1:48,5:33:53:0.094:2	./.	./.	0/1:53,7:31:60:0.117:2	./.
chr9	125512575	rs4838012	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,162:30:177:0.915:2	0/1:3,95:31:98:0.969:2	0/1:2,26:31:28:0.929:2	0/1:9,177:30:186:0.952:2	0/1:24,164:30:188:0.872:2	0/1:16,166:30:182:0.912:2	0/1:11,177:31:188:0.941:2	0/1:17,162:30:179:0.905:2	0/1:8,176:31:184:0.957:2	0/1:7,177:31:184:0.962:2	0/1:9,166:31:175:0.949:2
chr9	125512770	rs10985760	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:32:37:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,25:32:25:1.00:2	0/1:2,21:31:23:0.913:2	0/1:0,19:32:19:1.00:2	0/1:1,34:33:35:0.971:2	0/1:0,26:31:26:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,40:32:40:1.00:2
chr9	125512788	rs10818740	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:32:55:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,8:32:8:1.00:2	0/1:1,33:32:34:0.971:2	0/1:2,37:33:39:0.949:2	0/1:1,42:32:43:0.977:2	0/1:0,32:33:32:1.00:2	0/1:1,56:32:57:0.982:2	0/1:0,44:32:44:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,60:32:60:1.00:2
chr9	125512795	rs10818741	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:29:64:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,40:31:40:1.00:2	0/1:2,51:31:53:0.962:2	0/1:1,68:31:69:0.986:2	0/1:0,51:31:51:1.00:2	0/1:1,83:31:84:0.988:2	0/1:0,66:32:66:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,71:31:71:1.00:2
chr9	125512826	rs28670025	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,143:33:143:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,146:32:146:1.00:2	0/1:1,129:32:130:0.992:2	0/1:1,145:32:146:0.993:2	0/1:0,141:32:141:1.00:2	0/1:0,155:32:155:1.00:2	0/1:0,134:33:134:1.00:2	0/1:0,135:33:135:1.00:2	0/1:0,139:32:139:1.00:2
chr9	125524313	rs5027522	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:101,4:29:105:0.038:2	./.	./.	./.	0/1:172,6:31:178:0.034:2	./.	./.
chr9	125524367	rs5027523	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,5:34:138:0.036:2	./.	./.
chr9	125524836	rs7875715	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,134:33:134:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,133:33:133:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,124:32:124:1.00:2	0/1:0,87:33:87:1.00:2	0/1:0,160:32:160:1.00:2	0/1:0,180:33:180:1.00:2	0/1:0,109:32:109:1.00:2	0/1:0,176:33:176:1.00:2
chr9	125562651	rs55961642	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,56:31:120:0.467:2	./.	./.	0/1:71,68:30:139:0.489:2	./.	./.	./.
chr9	125562784	rs115002018	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,38:31:88:0.432:2	./.	./.	./.
chr9	125627639	rs117294809	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,18:31:35:0.514:2	./.	./.	./.	./.
chr9	125637471	rs2596699	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,84:33:84:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,107:32:107:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,98:32:98:1.00:2	0/1:0,70:31:70:1.00:2	0/1:0,98:33:98:1.00:2	0/1:0,113:33:113:1.00:2	0/1:0,97:33:97:1.00:2	0/1:0,143:33:143:1.00:2
chr9	125637648	rs2596698	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:33:65:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,60:33:60:1.00:2	0/1:0,74:33:74:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,75:33:75:1.00:2
chr9	125652757	rs10818759	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	./.	0/1:81,59:32:140:0.421:2	./.	./.	./.	./.
chr9	125772740	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:29:64:0.063:2	./.	./.	./.	./.	./.
chr9	125772742	.	G	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:37,15:25:52:0.288:2	./.	./.	0/1:38,7:27:45:0.156:2	0/1:53,24:22:77:0.312:2	0/1:60,22:25:82:0.268:2	0/1:64,20:22:84:0.238:2	0/1:52,21:26:73:0.288:2	0/1:58,15:24:73:0.205:2	0/1:38,8:24:46:0.174:2	0/1:47,11:26:58:0.190:2
chr9	125861741	rs2302590	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:34:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	125863896	rs145451585	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,57:30:114:0.500:2	./.	./.	./.
chr9	125874200	rs75170643	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,24:31:44:0.545:2	./.	./.	./.	./.	./.
chr9	125874370	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,21:31:40:0.525:2	./.
chr9	125874636	rs700089	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,30:27:30:1.00:2	0/1:0,20:29:20:1.00:2	./.	0/1:0,44:28:44:1.00:2	0/1:0,53:28:53:1.00:2	0/1:0,42:29:42:1.00:2	0/1:1,25:28:26:0.962:2	0/1:1,57:27:58:0.983:2	0/1:0,49:29:49:1.00:2	0/1:0,39:28:39:1.00:2	0/1:1,39:28:40:0.975:2
chr9	125874650	rs183944207	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,35:29:63:0.556:2	./.	./.	./.	./.	./.	./.
chr9	125874723	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,37:32:74:0.500:2	./.	./.
chr9	125875541	rs700090	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:29:52:1.00:2	0/1:0,37:29:37:1.00:2	0/1:1,8:29:9:0.889:2	0/1:1,74:29:75:0.987:2	0/1:0,90:29:90:1.00:2	0/1:0,64:27:64:1.00:2	0/1:1,80:28:81:0.988:2	0/1:0,67:28:67:1.00:2	0/1:0,62:30:63:1.00:2	0/1:0,46:30:47:1.00:2	0/1:1,68:30:69:0.986:2
chr9	125875664	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:33:120:0.033:2
chr9	125920376	rs803736	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,24:31:24:1.00:2	0/1:0,12:31:12:1.00:2	./.	0/1:0,28:31:28:1.00:2	0/1:1,25:31:26:0.962:2	0/1:0,23:30:23:1.00:2	0/1:2,22:31:24:0.917:2	0/1:0,30:32:30:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,32:32:32:1.00:2
chr9	126028395	rs7863265	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:33:7:1.00:2	./.	0/1:69,50:32:119:0.420:2	0/1:0,90:33:90:1.00:2	0/1:72,48:33:121:0.400:2	0/1:0,130:33:130:1.00:2	0/1:0,113:33:113:1.00:2	0/1:35,57:32:92:0.620:2	./.
chr9	126029070	rs4838037	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,19:31:19:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	126125318	rs2808415	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:31:25:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,30:31:32:1.00:2	0/1:0,41:29:41:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,11:32:11:1.00:2
chr9	126128211	rs1105223	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:29:6:0.667:2	./.	./.	./.	./.	./.
chr9	126128253	rs1105222	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:28:6:0.667:2	./.	./.	./.	./.	./.
chr9	126129904	rs10818812	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,28:31:47:0.596:2	./.	0/1:35,22:31:57:0.386:2	./.	0/1:23,32:31:55:0.582:2	0/1:29,28:32:57:0.491:2	0/1:26,17:33:43:0.395:2	0/1:8,11:32:19:0.579:2
chr9	126132919	rs33984675	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,19:30:19:1.00:2	0/1:0,13:32:13:1.00:2	./.	0/1:33,16:30:49:0.327:2	0/1:17,18:30:35:0.514:2	./.	0/1:0,33:30:33:1.00:2	./.	0/1:26,13:31:39:0.333:2	./.	0/1:10,11:29:21:0.524:2
chr9	126133252	rs55965026	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,30:31:65:0.462:2	./.	./.	./.	./.	./.
chr9	126133497	rs13290763	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,97:33:99:0.980:2	0/1:0,39:32:39:1.00:2	./.	0/1:65,60:32:125:0.480:2	0/1:40,54:32:94:0.574:2	./.	0/1:0,101:32:101:1.00:2	./.	0/1:69,66:33:135:0.489:2	./.	0/1:29,36:33:65:0.554:2
chr9	126133547	rs2488602	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:28:82:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,111:28:111:1.00:2	0/1:0,87:28:87:1.00:2	0/1:0,131:29:131:1.00:2	0/1:0,100:29:100:1.00:2	0/1:0,156:29:156:1.00:2	0/1:0,114:29:114:1.00:2	0/1:0,70:28:70:1.00:2	0/1:0,52:28:52:1.00:2
chr9	126134542	rs61740213	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,124:31:125:0.992:2	./.	0/1:69,68:30:138:0.496:2	0/1:96,88:32:184:0.478:2	0/1:86,70:31:156:0.449:2	0/1:70,46:31:116:0.397:2	0/1:57,52:32:109:0.477:2	0/1:0,90:31:90:1.00:2
chr9	126136139	rs73571431	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.
chr9	126136247	rs2488599	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,17:32:17:1.00:2	0/1:0,16:32:16:1.00:2	0/1:2,4:32:6:0.667:2	./.	0/1:20,11:33:31:0.355:2	0/1:9,6:32:15:0.400:2	0/1:13,16:30:29:0.552:2	0/1:13,14:32:27:0.519:2	0/1:18,5:31:23:0.217:2	./.	./.
chr9	126144746	rs2491348	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:30:49:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,59:32:59:1.00:2	0/1:1,35:31:36:0.972:2	0/1:0,48:31:49:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,37:32:37:1.00:2
chr9	126144758	rs2808409	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:30:54:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,61:29:61:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,64:30:64:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,67:30:67:1.00:2	0/1:0,48:29:49:1.00:2
chr9	126144759	rs149353656	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,30:31:68:0.441:2	./.	./.	./.
chr9	126146189	rs75693594	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:46,8:22:54:0.148:2	./.	./.	./.	0/1:84,15:26:99:0.152:2	0/1:53,13:26:66:0.197:2	0/1:41,10:26:51:0.196:2	0/1:74,16:26:90:0.178:2	0/1:41,11:26:52:0.212:2	0/1:37,8:28:45:0.178:2	0/1:44,7:28:51:0.137:2
chr9	126165702	rs112018705	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:30:9:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	126220114	rs61736953	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,23:31:64:0.359:2	./.	./.	./.	./.
chr9	126520068	rs9785285	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:30:14:0.571:2	./.	./.	./.	0/1:39,39:29:78:0.500:2	./.	./.	./.	./.
chr9	126776281	rs201094464	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,12:27:24:0.500:2	./.	./.	./.	./.
chr9	126783433	rs1042486	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,22:32:22:1.00:2	0/1:0,18:32:18:1.00:2	./.	0/1:0,44:33:44:1.00:2	0/1:1,70:32:71:0.986:2	0/1:0,41:33:41:1.00:2	0/1:53,24:33:77:0.312:2	./.	0/1:0,43:33:43:1.00:2	./.	0/1:23,29:32:53:0.558:2
chr9	126794808	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,3:29:14:0.214:2	./.	./.
chr9	127101924	rs10760354	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,141:32:141:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,178:32:178:1.00:2	0/1:0,184:32:184:1.00:2	0/1:1,171:32:172:0.994:2	0/1:0,182:32:182:1.00:2	0/1:1,187:32:188:0.995:2	0/1:0,162:33:162:1.00:2	0/1:2,152:32:154:0.987:2	0/1:1,150:31:151:0.993:2
chr9	127177161	rs4574	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,14:34:44:0.318:2	0/1:16,16:31:32:0.500:2	./.	0/1:25,46:33:71:0.648:2	0/1:28,24:31:52:0.462:2	0/1:39,21:33:60:0.350:2	0/1:33,26:32:59:0.441:2	0/1:1,68:31:69:0.986:2	0/1:32,16:34:48:0.333:2	0/1:30,31:32:61:0.508:2	0/1:45,29:31:74:0.392:2
chr9	127213429	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:33:72:0.056:2
chr9	127214880	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:31:46:0.087:2	./.	./.
chr9	127215344	rs7861556	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.
chr9	127215772	rs72616654	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:33:10:1.00:2	0/1:9,3:32:12:0.250:2	0/1:8,4:23:12:0.333:2	0/1:0,17:31:17:1.00:2	0/1:10,14:30:24:0.583:2	./.	0/1:0,8:31:8:1.00:2	0/1:6,5:31:11:0.455:2
chr9	127215778	rs67997410	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:34:2:1.00:2	0/1:0,10:32:10:1.00:2	0/1:9,3:31:12:0.250:2	0/1:8,4:31:12:0.333:2	0/1:0,17:31:17:1.00:2	0/1:11,14:30:25:0.560:2	./.	0/1:0,8:31:8:1.00:2	0/1:6,5:32:11:0.455:2
chr9	127217210	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,29:29:40:0.725:2	./.	./.	./.
chr9	127217361	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,4:33:62:0.065:2	./.	./.	./.	./.	./.	./.	./.
chr9	127220952	rs12347840	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:30:61:1.00:2	0/1:0,36:30:36:1.00:2	0/1:9,9:28:18:0.500:2	0/1:0,82:29:82:1.00:2	0/1:0,74:29:74:1.00:2	0/1:46,46:29:92:0.500:2	0/1:1,93:30:94:0.989:2	0/1:52,58:29:110:0.527:2	./.	0/1:0,56:30:56:1.00:2	0/1:0,65:29:65:1.00:2
chr9	127228596	rs4838184	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,15:28:15:1.00:2	0/1:2,140:29:142:0.986:2	0/1:76,54:28:130:0.415:2	0/1:110,70:29:180:0.389:2	0/1:1,131:28:133:0.992:2	0/1:107,82:29:189:0.434:2	0/1:79,65:29:144:0.451:2	0/1:0,117:29:117:1.00:2	0/1:90,78:28:168:0.464:2
chr9	127230891	rs10760365	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:31:9:0.444:2	0/1:62,66:31:128:0.516:2	./.	0/1:70,70:30:140:0.500:2	0/1:56,54:31:110:0.491:2	0/1:69,70:31:139:0.504:2	0/1:68,62:32:130:0.477:2	0/1:51,64:31:115:0.557:2	0/1:47,22:30:69:0.319:2
chr9	127231774	rs1570580	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:28:5:0.600:2	0/1:37,44:30:82:0.543:2	./.	0/1:54,35:29:89:0.393:2	0/1:57,42:30:99:0.424:2	0/1:73,49:29:122:0.402:2	0/1:47,32:30:79:0.405:2	0/1:31,29:29:60:0.483:2	0/1:31,33:30:64:0.516:2
chr9	127232855	rs151185470	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,21:30:36:0.583:2	./.	./.	./.	./.	./.	./.	./.
chr9	127316676	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:32:158:0.025:2
chr9	127456067	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,11:30:32:0.344:2	./.	./.	./.	./.	./.
chr9	127563364	rs913231	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,51:31:51:1.00:2	0/1:1,35:31:36:0.972:2	./.	0/1:35,34:31:69:0.493:2	0/1:0,54:30:54:1.00:2	0/1:40,34:31:74:0.459:2	0/1:37,26:30:63:0.413:2	0/1:56,35:31:91:0.385:2	0/1:0,89:32:89:1.00:2	0/1:33,42:31:75:0.560:2	0/1:0,41:31:41:1.00:2
chr9	127566378	rs7874348	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,8:24:21:0.381:2	0/1:4,4:25:8:0.500:2	./.	0/1:22,18:29:40:0.450:2	0/1:36,22:29:58:0.379:2	0/1:23,19:29:42:0.452:2	0/1:24,34:28:58:0.586:2	./.	0/1:0,25:28:25:1.00:2	0/1:0,30:27:30:1.00:2	0/1:13,24:28:37:0.649:2
chr9	127572232	rs139197654	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,82:31:161:0.509:2	./.	./.	./.	./.
chr9	127616537	rs12375547	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:32,36:33:68:0.529:2	0/1:26,24:34:50:0.480:2	0/1:8,4:34:12:0.333:2	./.	0/1:77,63:32:140:0.450:2	0/1:0,114:32:114:1.00:2	./.	./.	./.	0/1:0,109:33:109:1.00:2	./.
chr9	127618776	rs2274970	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:29:26:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,31:29:31:1.00:2	0/1:1,30:29:31:0.968:2	0/1:0,13:28:13:1.00:2	0/1:0,27:27:27:1.00:2	0/1:1,40:28:41:0.976:2	0/1:0,28:28:28:1.00:2	0/1:14,17:30:31:0.548:2	0/1:0,37:28:37:1.00:2
chr9	127618839	rs10760381	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,36:32:36:1.00:2	0/1:1,53:32:54:0.981:2	0/1:1,79:33:80:0.988:2	0/1:0,36:34:36:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,45:32:45:1.00:2
chr9	127643456	rs687434	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:52,36:32:88:0.409:2	0/1:37,34:31:71:0.479:2	./.	./.	0/1:51,40:32:91:0.440:2	0/1:0,112:31:112:1.00:2	./.	./.	./.	0/1:52,47:32:99:0.475:2	./.
chr9	127661645	rs634710	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,15:32:35:0.429:2	0/1:14,13:31:27:0.481:2	./.	./.	0/1:27,19:31:46:0.413:2	0/1:0,35:30:35:1.00:2	./.	./.	./.	0/1:0,35:31:35:1.00:2	./.
chr9	127674200	rs583134	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,112:30:113:1.00:2	0/1:0,96:29:96:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,132:30:132:1.00:2	0/1:1,109:29:110:0.991:2	0/1:0,145:30:145:1.00:2	0/1:0,92:29:93:1.00:2	0/1:0,196:30:196:1.00:2	0/1:0,145:31:145:1.00:2	0/1:0,130:30:130:1.00:2	0/1:0,164:30:164:1.00:2
chr9	127764305	rs764304	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,11:31:34:0.324:2	0/1:10,4:31:14:0.286:2	./.	0/1:28,13:32:41:0.317:2	0/1:18,16:32:34:0.471:2	./.	0/1:16,16:31:32:0.500:2	0/1:24,13:31:37:0.351:2	0/1:27,22:32:49:0.449:2	./.	0/1:24,24:32:48:0.500:2
chr9	127818276	rs589292	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,13:31:32:0.406:2	0/1:6,7:31:13:0.538:2	./.	./.	0/1:22,14:30:36:0.389:2	0/1:0,27:29:27:1.00:2	./.	./.	./.	./.	./.
chr9	127912014	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,5:28:132:0.038:2	./.	./.	./.	./.
chr9	127951863	rs466994	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,6:32:12:0.500:2	0/1:1,5:31:6:0.833:2	./.	./.	0/1:7,7:31:14:0.500:2	0/1:0,13:29:13:1.00:2	./.	0/1:2,4:29:6:0.667:2	0/1:7,3:30:10:0.300:2	0/1:5,3:29:8:0.375:2	0/1:5,4:31:9:0.444:2
chr9	127962916	rs501963	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,4:32:14:0.286:2	0/1:3,9:32:12:0.750:2	./.	./.	0/1:13,9:30:22:0.409:2	0/1:0,22:31:22:1.00:2	./.	0/1:22,10:31:32:0.313:2	0/1:12,11:33:23:0.478:2	0/1:9,8:31:17:0.471:2	0/1:17,12:31:29:0.414:2
chr9	127962972	rs10986636	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,24:31:58:0.414:2	0/1:30,16:31:46:0.348:2	./.	0/1:27,26:29:53:0.491:2
chr9	127975654	rs1128362	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,21:30:58:0.362:2	0/1:42,33:30:75:0.440:2	./.	0/1:38,22:30:60:0.367:2
chr9	127996048	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:32:138:0.029:2	./.	./.	./.	./.
chr9	127998925	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:29:105:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	127999308	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:178,6:32:184:0.033:2	./.	./.	./.	./.	./.	./.	0/1:181,16:32:197:0.081:2	0/1:166,5:33:171:0.029:2	./.	./.
chr9	128001345	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:186,6:31:192:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr9	128001351	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,6:32:196:0.031:2	./.	./.	0/1:167,4:32:171:0.023:2	./.	./.	./.	./.
chr9	128001394	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,5:33:200:0.025:2	./.	./.	0/1:186,6:32:193:0.031:2	./.
chr9	128064326	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:30:62:0.065:2	./.	./.	./.	./.	./.
chr9	128069703	rs13299973	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,20:32:47:0.426:2	./.	./.	./.	./.	0/1:23,28:34:51:0.549:2	./.	./.
chr9	128072273	rs568409	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,8:32:18:0.444:2	0/1:0,98:32:98:1.00:2	./.	0/1:64,62:32:126:0.492:2	0/1:0,107:32:107:1.00:2	0/1:59,49:33:108:0.454:2	0/1:71,41:33:112:0.366:2	0/1:0,106:33:106:1.00:2	0/1:68,53:32:121:0.438:2
chr9	128074807	rs432757	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:33:72:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,100:33:100:1.00:2	0/1:0,100:32:100:1.00:2	0/1:57,83:32:140:0.593:2	0/1:0,128:33:128:1.00:2	0/1:0,95:33:95:1.00:2	0/1:3,124:33:127:0.976:2	0/1:0,78:33:78:1.00:2	0/1:0,112:34:112:1.00:2
chr9	128246786	rs2070113	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:98,89:32:187:0.476:2	0/1:78,68:32:146:0.466:2	./.	./.	0/1:92,103:31:195:0.528:2	./.	./.	./.	./.	0/1:102,83:32:185:0.449:2	./.
chr9	128432108	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:31:146:0.027:2	./.	./.
chr9	129102840	rs1888156	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:32:11:0.455:2	./.	./.	0/1:40,48:31:88:0.545:2	./.	./.	./.	0/1:38,28:33:66:0.424:2	0/1:51,54:32:105:0.514:2
chr9	129143435	rs2286889	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,7:32:20:0.350:2	./.	./.	./.	./.	0/1:17,12:31:29:0.414:2
chr9	129453229	rs2277158	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,35:33:62:0.565:2	0/1:21,23:32:44:0.523:2	0/1:10,6:33:16:0.375:2	0/1:67,38:33:105:0.362:2	0/1:84,72:33:156:0.462:2	0/1:70,44:33:114:0.386:2	./.	0/1:2,121:33:123:0.984:2	0/1:0,96:34:96:1.00:2	0/1:0,69:33:69:1.00:2	0/1:43,27:32:70:0.386:2
chr9	129455587	rs13295990	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,27:32:60:0.458:2	0/1:22,21:32:43:0.488:2	0/1:6,6:33:12:0.500:2	0/1:18,29:30:47:0.617:2	0/1:21,19:28:40:0.475:2	0/1:44,34:32:78:0.436:2	./.	0/1:0,63:30:63:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,60:32:60:1.00:2	0/1:23,17:30:40:0.425:2
chr9	129458227	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,33:31:79:0.418:2	0/1:33,13:31:46:0.283:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	129594815	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	129594920	rs34789090	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,26:33:51:0.510:2	./.	./.
chr9	129595228	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,4:31:57:0.070:2	./.	./.	./.	./.	./.	./.	./.
chr9	129595895	rs3118994	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,14:32:30:0.467:2	0/1:12,13:29:25:0.520:2	0/1:0,5:30:5:1.00:2	0/1:23,25:30:48:0.521:2	0/1:0,49:30:49:1.00:2	0/1:0,43:29:43:1.00:2	0/1:2,35:30:38:0.946:2	0/1:24,18:28:42:0.429:2	0/1:18,21:31:39:0.538:2	0/1:0,41:30:41:1.00:2	0/1:1,43:30:44:0.977:2
chr9	129597840	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:33:66:0.061:2	./.	./.	./.	./.	./.
chr9	129600085	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:32:47:0.085:2	./.	./.	./.	./.	./.
chr9	129643124	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,24:32:53:0.453:2	0/1:38,15:31:53:0.283:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	129643296	rs10819246	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,82:32:186:0.441:2	0/1:97,78:32:175:0.446:2	./.	./.
chr9	129644666	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:32:58:0.069:2	./.	./.	./.	./.	./.
chr9	129645251	rs41274420	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,54:33:108:0.500:2	0/1:41,54:34:95:0.568:2	./.	./.
chr9	129645299	rs76698109	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,32:32:79:0.405:2	./.	./.	./.
chr9	129645991	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,10:16:76:0.132:2	./.	./.	./.
chr9	129646333	rs41274422	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,28:33:65:0.431:2	./.
chr9	129646471	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,3:33:43:0.070:2
chr9	129646775	rs12178	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,13:29:22:0.591:2	0/1:17,7:29:24:0.292:2	./.	./.
chr9	129647028	rs571606	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,12:29:28:0.429:2	0/1:14,3:33:17:0.176:2	./.	0/1:9,30:33:39:0.769:2	0/1:20,12:31:32:0.375:2	./.	./.	./.	./.	0/1:17,16:33:33:0.485:2	0/1:0,45:32:45:1.00:2
chr9	129647222	rs624903	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,10:30:21:0.476:2	0/1:6,8:31:14:0.571:2	./.	0/1:11,28:32:39:0.718:2	0/1:11,9:29:20:0.450:2	./.	./.	./.	./.	0/1:17,18:32:35:0.514:2	0/1:0,34:32:34:1.00:2
chr9	129752239	rs10819260	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,41:31:84:0.488:2	./.	./.	./.	0/1:41,37:31:78:0.474:2	0/1:35,33:32:68:0.485:2	0/1:45,24:32:69:0.348:2	./.
chr9	129831659	rs1281158	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,18:31:18:1.00:2	0/1:0,20:32:20:1.00:2	./.	0/1:1,14:31:15:0.933:2	0/1:1,13:31:14:0.929:2	0/1:0,13:31:13:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,38:32:38:1.00:2
chr9	129854199	rs2297866	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:35,22:33:57:0.386:2	0/1:38,19:31:58:0.333:2	0/1:2,16:32:18:0.889:2	./.	./.	0/1:0,98:31:98:1.00:2	0/1:69,56:31:126:0.448:2	./.	./.	./.	./.
chr9	129946311	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:33:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	130075769	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:148,5:31:153:0.033:2	./.	./.	./.	./.	./.	./.
chr9	130095316	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,12:32:18:0.667:2	./.
chr9	130164993	rs1138739	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:11,20:32:31:0.645:2	0/1:15,11:32:26:0.423:2	./.	./.	0/1:8,12:32:20:0.600:2	./.	./.	./.	0/1:6,22:32:28:0.786:2	./.	./.
chr9	130165973	rs34064803	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,39:32:87:0.448:2	./.	0/1:2,73:31:75:0.973:2	./.	./.	./.
chr9	130165995	rs1138740	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:25,19:30:44:0.432:2	0/1:13,16:31:29:0.552:2	./.	./.	0/1:55,47:29:102:0.461:2	./.	./.	./.	0/1:37,46:31:83:0.554:2	./.	./.
chr9	130191186	rs13292096	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,19:30:45:0.422:2	0/1:19,14:30:33:0.424:2	0/1:0,11:28:11:1.00:2	0/1:34,20:29:54:0.370:2	0/1:20,22:30:42:0.524:2	0/1:23,17:28:40:0.425:2	0/1:0,26:29:26:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,44:30:44:1.00:2	0/1:29,22:29:51:0.431:2	0/1:30,29:29:59:0.492:2
chr9	130197414	rs4504745	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,79:31:170:0.465:2	0/1:66,37:32:103:0.359:2	0/1:0,18:31:18:1.00:2	0/1:100,67:33:168:0.401:2	0/1:72,76:33:148:0.514:2	0/1:97,85:33:182:0.467:2	0/1:1,144:33:145:0.993:2	0/1:2,159:33:161:0.988:2	0/1:0,157:34:158:1.00:2	0/1:109,63:32:172:0.366:2	0/1:95,89:32:184:0.484:2
chr9	130206669	rs2298182	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,35:31:59:0.593:2	0/1:23,13:30:36:0.361:2	./.	./.	./.	0/1:2,43:31:45:0.956:2	./.	./.
chr9	130206762	rs2248025	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:27,21:32:48:0.438:2	0/1:22,13:32:35:0.371:2	0/1:0,7:31:7:1.00:2	./.	./.	0/1:27,17:32:44:0.386:2	0/1:4,43:31:47:0.915:2	0/1:2,58:31:60:0.967:2	./.	0/1:26,13:31:39:0.333:2	0/1:29,19:31:48:0.396:2
chr9	130206942	rs113446664	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,3:32:34:0.088:2	./.
chr9	130206963	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,3:33:36:0.083:2	./.
chr9	130206972	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,3:31:40:0.075:2	./.
chr9	130207072	rs151218737	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:27:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	130213615	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,6:30:99:0.061:2	./.	./.	./.	./.
chr9	130219669	rs2243906	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,11:29:34:0.324:2	0/1:10,6:30:16:0.375:2	0/1:0,6:31:6:1.00:2	0/1:41,28:28:69:0.406:2	0/1:43,38:29:81:0.469:2	0/1:50,52:30:102:0.510:2	0/1:1,90:30:91:0.989:2	0/1:0,95:29:95:1.00:2	0/1:0,51:30:51:1.00:2	0/1:26,24:30:50:0.480:2	0/1:37,20:30:57:0.351:2
chr9	130242166	rs1539567	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,22:27:59:0.373:2	0/1:11,19:28:30:0.633:2	0/1:0,9:29:9:1.00:2	0/1:40,57:28:97:0.588:2	0/1:34,37:28:71:0.521:2	0/1:0,92:28:92:1.00:2	0/1:0,59:27:59:1.00:2	0/1:2,91:28:94:0.978:2	0/1:0,70:28:70:1.00:2	0/1:22,26:27:48:0.542:2	0/1:25,21:27:46:0.457:2
chr9	130259618	rs2248822	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,4:31:16:0.250:2	0/1:5,5:33:10:0.500:2	./.	0/1:19,7:32:26:0.269:2	0/1:10,14:31:24:0.583:2	0/1:0,20:32:20:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,26:32:26:1.00:2	0/1:6,9:31:15:0.600:2	0/1:11,5:33:16:0.313:2
chr9	130270782	rs11545937	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,22:31:23:0.957:2	./.	./.	./.
chr9	130272440	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,29:32:62:0.468:2	0/1:18,21:32:39:0.538:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	130341253	rs4240420	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:32:32:1.00:2	0/1:0,23:32:23:1.00:2	0/1:2,6:29:8:0.750:2	0/1:2,40:32:42:0.952:2	0/1:0,23:33:23:1.00:2	0/1:0,33:32:33:1.00:2	0/1:24,14:30:38:0.368:2	0/1:1,36:33:37:0.973:2	0/1:0,36:34:36:1.00:2	0/1:22,21:32:43:0.488:2	0/1:0,31:32:31:1.00:2
chr9	130416076	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:31:122:0.033:2	./.	./.	./.	./.	./.
chr9	130438089	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,4:32:143:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr9	130475011	rs522328	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,111:30:112:0.991:2	0/1:2,59:30:61:0.967:2	0/1:0,24:31:24:1.00:2	0/1:103,87:29:190:0.458:2	0/1:111,83:32:194:0.428:2	0/1:0,189:30:189:1.00:2	0/1:111,84:31:195:0.431:2	0/1:0,185:30:185:1.00:2	./.	0/1:83,65:30:148:0.439:2	0/1:0,140:29:140:1.00:2
chr9	130475442	rs497632	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,62:32:65:0.954:2	0/1:0,42:32:42:1.00:2	0/1:0,12:33:12:1.00:2	0/1:52,40:33:92:0.435:2	0/1:45,36:33:81:0.444:2	0/1:0,77:32:77:1.00:2	0/1:62,57:32:119:0.479:2	0/1:0,97:33:97:1.00:2	./.	0/1:20,24:33:44:0.545:2	0/1:0,83:32:83:1.00:2
chr9	130476667	rs61745122	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,52:33:83:0.627:2	./.	./.	./.	./.	./.
chr9	130476683	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,4:31:105:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr9	130487070	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,4:33:22:0.182:2	./.	./.
chr9	130489558	rs472144	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,79:32:80:0.988:2	0/1:0,47:32:47:1.00:2	0/1:0,13:33:13:1.00:2	0/1:53,60:33:113:0.531:2	0/1:77,37:31:114:0.325:2	0/1:0,121:32:121:1.00:2	0/1:84,72:33:156:0.462:2	0/1:0,133:32:133:1.00:2	./.	0/1:61,41:32:102:0.402:2	0/1:0,92:32:92:1.00:2
chr9	130489682	rs148801626	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,24:33:61:0.393:2	./.	./.
chr9	130489743	rs13298768	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,13:31:14:0.929:2	0/1:0,8:33:8:1.00:2	0/1:0,2:31:2:1.00:2	0/1:10,12:32:22:0.545:2	0/1:6,4:32:10:0.400:2	0/1:10,5:32:15:0.333:2	./.	0/1:1,18:32:19:0.947:2	./.	./.	0/1:0,27:32:27:1.00:2
chr9	130493513	rs482095	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,85:33:89:0.955:2	0/1:1,63:32:64:0.984:2	0/1:0,12:33:12:1.00:2	0/1:102,68:34:170:0.400:2	0/1:81,59:32:140:0.421:2	0/1:0,149:32:149:1.00:2	0/1:82,72:33:154:0.468:2	0/1:1,155:33:156:0.994:2	./.	0/1:65,44:33:109:0.404:2	0/1:0,97:33:97:1.00:2
chr9	130494486	rs114990094	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,51:30:107:0.477:2	./.	./.	./.	./.
chr9	130494542	rs199747582	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,4:33:120:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr9	130494957	rs538066	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:31:47:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,71:31:71:1.00:2	0/1:1,106:31:108:0.991:2	0/1:0,88:31:88:1.00:2	0/1:0,101:31:102:1.00:2	0/1:1,90:30:91:0.989:2	0/1:0,87:32:87:1.00:2	0/1:0,71:30:71:1.00:2	0/1:0,65:30:65:1.00:2
chr9	130495585	rs151195997	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,15:30:42:0.357:2	./.	./.	./.	./.
chr9	130495633	rs564754	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:29:31:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,2:31:2:1.00:2	0/1:14,18:30:32:0.563:2	0/1:20,12:29:32:0.375:2	0/1:0,24:32:24:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,40:30:40:1.00:2	./.	0/1:12,11:29:23:0.478:2	0/1:0,24:28:24:1.00:2
chr9	130502018	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:33:46:0.087:2
chr9	130504070	rs514024	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:31:33:1.00:2	0/1:1,33:31:34:0.971:2	0/1:0,7:32:7:1.00:2	0/1:30,34:32:64:0.531:2	0/1:26,34:32:60:0.567:2	0/1:0,70:32:70:1.00:2	0/1:33,18:32:51:0.353:2	0/1:0,94:31:94:1.00:2	./.	./.	0/1:0,39:32:39:1.00:2
chr9	130509439	rs2233505	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,51:30:122:0.418:2	./.	./.	./.	./.
chr9	130536717	rs10760500	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:31:4:0.750:2	0/1:23,13:31:36:0.361:2	0/1:22,10:31:32:0.313:2	0/1:0,43:30:43:1.00:2	0/1:32,13:31:45:0.289:2	0/1:0,54:30:54:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,33:30:33:1.00:2	./.
chr9	130569880	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,6:32:98:0.061:2	./.	./.	./.	./.	./.	./.	./.
chr9	130578203	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,4:32:84:0.048:2	./.	./.	./.	./.	./.	./.	./.
chr9	130586688	rs3739817	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,7:31:16:0.438:2	./.	./.	0/1:72,44:31:116:0.379:2	./.	./.	./.	./.	./.
chr9	130588091	rs41322046	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,21:28:46:0.457:2	./.	./.
chr9	130591990	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:32:146:0.027:2	./.	./.	./.	./.
chr9	130605385	rs11545664	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:31:5:0.800:2	./.	./.	./.	0/1:1,37:32:38:0.974:2	./.	./.	0/1:20,8:32:28:0.286:2	./.
chr9	130630639	rs913986	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:27:24:1.00:2	0/1:0,9:27:10:1.00:2	0/1:0,4:28:4:1.00:2	0/1:0,18:27:18:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,28:28:29:1.00:2	0/1:0,33:28:33:1.00:2	0/1:0,24:27:24:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,32:28:32:1.00:2	0/1:0,24:28:24:1.00:2
chr9	130630749	rs8192462	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,38:33:73:0.521:2	./.
chr9	130660232	rs3758330	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:38,21:34:59:0.356:2	0/1:19,15:31:34:0.441:2	./.	./.	0/1:75,91:32:166:0.548:2	0/1:51,47:32:98:0.480:2	./.	./.	./.	./.	./.
chr9	130674597	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,4:33:106:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr9	130674756	rs35701259	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,72:32:154:0.468:2	./.	./.	./.
chr9	130690412	rs10760515	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,15:25:15:1.00:2	0/1:1,11:28:12:0.917:2	0/1:0,3:27:3:1.00:2	0/1:4,15:28:19:0.789:2	0/1:0,31:27:31:1.00:2	0/1:0,33:28:33:1.00:2	0/1:1,25:27:28:0.962:2	0/1:0,36:26:36:1.00:2	0/1:0,27:29:27:1.00:2	0/1:14,15:28:29:0.517:2	0/1:0,19:27:19:1.00:2
chr9	130691993	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:32:141:0.028:2	./.	./.	./.	./.
chr9	130698029	rs7997	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:33:38:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,11:32:11:1.00:2	0/1:58,29:34:87:0.333:2	0/1:0,80:32:80:1.00:2	0/1:0,75:33:75:1.00:2	0/1:2,80:33:82:0.976:2	0/1:49,35:33:84:0.417:2	0/1:0,77:33:77:1.00:2	0/1:32,32:32:64:0.500:2	0/1:0,66:33:66:1.00:2
chr9	130698043	rs6781	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:29:36:1.00:2	0/1:0,39:28:39:1.00:2	0/1:0,12:29:12:1.00:2	0/1:53,30:30:83:0.361:2	0/1:0,74:29:74:1.00:2	0/1:0,76:29:76:1.00:2	0/1:2,63:29:65:0.969:2	0/1:44,35:29:79:0.443:2	0/1:0,75:31:75:1.00:2	0/1:31,32:29:63:0.508:2	0/1:0,66:30:66:1.00:2
chr9	130707081	rs2274426	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:32:18:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,4:34:4:1.00:2	0/1:16,10:33:26:0.385:2	0/1:0,28:32:28:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,18:32:18:1.00:2	0/1:10,9:30:19:0.474:2	0/1:0,17:32:17:1.00:2	0/1:20,4:32:24:0.167:2	0/1:0,10:31:10:1.00:2
chr9	130715906	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:34:65:0.062:2	./.	./.
chr9	130829020	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,10:30:33:0.303:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	130829039	rs1539350	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:30:20:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,25:31:26:1.00:2	0/1:1,13:29:14:0.929:2	0/1:0,21:31:21:1.00:2	0/1:2,34:30:36:0.944:2	0/1:0,14:33:14:1.00:2	0/1:0,16:31:16:1.00:2	0/1:1,16:31:17:0.941:2
chr9	130830742	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	130860866	rs947624	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:30:51:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,75:30:75:1.00:2	0/1:2,72:29:74:0.973:2	0/1:0,72:29:72:1.00:2	0/1:0,86:30:86:1.00:2	0/1:0,78:29:78:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,61:30:61:1.00:2	0/1:0,73:29:73:1.00:2
chr9	130864676	rs7859709	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:29:54:1.00:2	0/1:0,17:28:17:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,95:29:95:1.00:2	0/1:0,181:29:181:1.00:2	0/1:0,123:30:123:1.00:2	0/1:0,185:30:185:1.00:2	0/1:0,117:29:117:1.00:2	0/1:0,71:30:71:1.00:2	0/1:0,81:30:81:1.00:2	0/1:2,97:28:99:0.980:2
chr9	130883511	rs2040004	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,131:31:131:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,181:31:181:1.00:2	0/1:0,193:30:193:1.00:2	0/1:0,180:30:180:1.00:2	0/1:0,186:31:186:1.00:2	0/1:2,185:31:187:0.989:2	0/1:0,186:32:186:1.00:2	0/1:0,193:31:193:1.00:2	0/1:0,161:31:161:1.00:2
chr9	130884753	rs13283456	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,12:31:29:0.429:2	0/1:9,12:30:21:0.571:2	./.	./.	./.	./.	./.	0/1:0,26:30:26:1.00:2
chr9	130925823	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,4:30:64:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr9	130938661	rs11549266	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:21,27:32:48:0.563:2	0/1:13,18:31:31:0.581:2	./.	./.	./.	./.	./.	0/1:48,42:31:90:0.467:2	./.	./.	0/1:26,12:32:38:0.316:2
chr9	130965797	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,3:31:27:0.111:2	./.
chr9	130980937	rs2229917	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,72:30:119:0.605:2	./.	./.	./.	./.	./.	./.
chr9	130984755	rs3003609	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,21:31:37:0.568:2	0/1:13,17:32:30:0.567:2	0/1:0,5:32:5:1.00:2	0/1:0,70:31:70:1.00:2	0/1:44,47:31:91:0.516:2	0/1:0,69:31:69:1.00:2	./.	0/1:55,27:31:82:0.329:2	0/1:49,34:32:83:0.410:2	0/1:0,54:31:54:1.00:2	0/1:35,39:31:74:0.527:2
chr9	130984809	rs35048348	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:24,15:31:39:0.385:2	0/1:19,6:31:25:0.240:2	./.	./.	./.	./.	0/1:62,47:31:109:0.431:2	./.	./.	./.	./.
chr9	131007001	rs146892675	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,22:28:49:0.449:2	./.	./.	./.	./.	./.	./.
chr9	131019696	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,5:28:20:0.250:2	./.	0/1:11,3:32:14:0.214:2	./.	./.	./.	./.
chr9	131019737	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,5:32:20:0.250:2	./.	0/1:14,3:32:17:0.176:2	./.	./.	./.	./.
chr9	131019747	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,4:37:25:0.160:2	./.	./.	./.	./.	./.	./.
chr9	131020400	rs41276654	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,11:27:18:0.611:2	./.	./.	./.	./.	./.	./.
chr9	131027963	rs12335848	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,3:31:32:0.094:2	./.	./.	./.	./.
chr9	131028097	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:29:112:0.036:2	./.	./.	./.
chr9	131028255	rs41276660	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,41:32:92:0.446:2	./.	./.
chr9	131036144	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:33:136:0.029:2	./.
chr9	131038188	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:31:83:0.048:2	./.	./.	./.
chr9	131077830	rs191030207	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,12:31:34:0.353:2	./.	./.	./.	./.	./.	./.
chr9	131084628	rs11539570	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,12:29:26:0.462:2	0/1:10,10:30:20:0.500:2	./.	./.	./.	0/1:16,13:28:30:0.448:2	./.	./.	./.	./.	./.
chr9	131085373	rs3003601	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,3:27:3:1.00:2	0/1:0,2:29:2:1.00:2	0/1:0,10:28:10:1.00:2	0/1:0,10:26:10:1.00:2	0/1:0,29:29:29:1.00:2	0/1:0,10:26:10:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,13:29:13:1.00:2	0/1:0,4:26:4:1.00:2	0/1:0,5:30:5:1.00:2
chr9	131088076	rs2270203	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,52:32:134:0.388:2	./.	./.
chr9	131095792	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,52:32:115:0.452:2	./.
chr9	131186822	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,8:18:53:0.151:2	0/1:40,7:18:47:0.149:2
chr9	131193519	rs3174220	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,20:33:37:0.541:2	./.	./.	./.	./.
chr9	131196695	rs7258	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,10:31:22:0.455:2	./.	./.	0/1:24,13:32:37:0.351:2	./.	0/1:22,12:32:34:0.353:2
chr9	131196704	rs7259	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,12:30:24:0.500:2	0/1:23,19:31:42:0.452:2	./.	0/1:24,15:32:39:0.385:2	./.	0/1:25,15:31:40:0.375:2
chr9	131223323	rs370139700	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:32:14:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	131233697	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,6:34:151:0.040:2	./.	./.
chr9	131235321	rs4512487	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:30:46:1.00:2	0/1:1,33:30:34:0.971:2	0/1:0,8:31:8:1.00:2	0/1:0,81:30:81:1.00:2	0/1:0,110:30:110:1.00:2	0/1:0,84:31:84:1.00:2	0/1:0,118:30:118:1.00:2	0/1:2,109:30:111:0.982:2	0/1:1,71:31:72:0.986:2	0/1:1,63:29:64:0.984:2	0/1:0,64:30:64:1.00:2
chr9	131246996	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,6:33:144:0.042:2	./.	./.	./.	./.
chr9	131260808	rs16930426	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,58:32:139:0.417:2	./.	./.	./.	./.
chr9	131262457	rs372276840	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:32:183:0.022:2	./.	./.	./.	./.
chr9	131285955	rs2275260	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,25:32:51:0.490:2	./.	0/1:25,33:31:58:0.569:2	0/1:42,26:32:68:0.382:2	./.	./.	./.	0/1:35,31:32:66:0.470:2
chr9	131345434	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:31:107:0.037:2
chr9	131346218	rs10760566	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:33:85:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,88:32:89:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,93:33:93:1.00:2	0/1:0,96:31:96:1.00:2	0/1:0,107:33:107:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,101:32:101:1.00:2
chr9	131346694	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:35:52:0.077:2	./.	./.
chr9	131353809	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,32:30:66:0.485:2	./.	./.	./.	./.
chr9	131360750	rs2227864	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,129:31:129:1.00:2	0/1:1,47:31:48:0.979:2	0/1:0,12:31:12:1.00:2	0/1:0,145:30:145:1.00:2	0/1:1,159:30:160:0.994:2	0/1:0,158:30:158:1.00:2	0/1:6,187:31:193:0.969:2	0/1:1,186:31:187:0.995:2	0/1:0,157:31:157:1.00:2	0/1:1,109:31:110:0.991:2	0/1:73,61:31:134:0.455:2
chr9	131373995	rs184863049	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,11:30:20:0.550:2	./.	./.	./.
chr9	131375701	rs1415568	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:32:102:1.00:2	0/1:0,67:33:67:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,140:32:140:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,142:33:142:1.00:2	0/1:0,133:32:133:1.00:2	0/1:0,158:33:158:1.00:2	0/1:0,141:33:141:1.00:2	0/1:0,113:32:114:1.00:2	0/1:0,163:33:164:1.00:2
chr9	131379967	rs2227862	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,90:31:90:1.00:2	0/1:1,78:32:79:0.987:2	0/1:46,62:32:108:0.574:2	0/1:1,85:32:86:0.988:2	0/1:0,82:32:82:1.00:2	0/1:0,59:32:59:1.00:2	0/1:37,44:32:81:0.543:2
chr9	131386744	rs138320965	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,4:32:61:0.066:2	./.	./.	./.	./.	./.	./.
chr9	131395568	rs2228952	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,26:31:59:0.441:2	./.	./.	./.	./.
chr9	131397479	rs4837291	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:32:86:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,139:31:141:1.00:2	0/1:0,146:31:146:1.00:2	0/1:56,62:31:118:0.525:2	0/1:0,159:31:159:1.00:2	0/1:0,127:33:128:1.00:2	0/1:0,90:32:90:1.00:2	0/1:45,21:32:66:0.318:2
chr9	131398636	rs10760570	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:31:18:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,40:30:40:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,26:30:26:1.00:2	0/1:1,19:30:20:0.950:2	0/1:0,21:31:21:1.00:2	0/1:6,17:30:23:0.739:2
chr9	131403096	rs2298045	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:29:36:1.00:2	0/1:0,24:29:24:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,61:29:61:1.00:2	0/1:0,85:29:85:1.00:2	0/1:0,58:29:58:1.00:2	0/1:0,79:31:79:1.00:2	0/1:3,85:30:88:0.966:2	0/1:0,55:31:55:1.00:2	0/1:0,61:30:61:1.00:2	0/1:26,15:29:41:0.366:2
chr9	131403144	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,4:26:53:0.075:2	./.	./.	./.	./.	./.	./.
chr9	131418828	rs4837292	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	./.
chr9	131465167	rs1572915	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	0/1:0,2:34:2:1.00:2	0/1:0,2:34:2:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,7:32:7:1.00:2
chr9	131483551	rs11539209	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,47:31:106:0.443:2	./.	./.
chr9	131483749	rs2900268	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,20:32:21:0.952:2	0/1:0,25:31:25:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,19:32:19:1.00:2
chr9	131484998	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:32:143:0.028:2	./.	./.	./.	./.	./.
chr9	131515547	rs8507	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,13:29:13:1.00:2	0/1:0,17:32:17:1.00:2	./.	0/1:12,14:32:26:0.538:2	0/1:0,24:31:24:1.00:2	0/1:14,15:32:29:0.517:2	0/1:0,34:32:34:1.00:2	0/1:21,16:31:37:0.432:2	0/1:19,13:32:32:0.406:2	./.	0/1:11,15:31:26:0.577:2
chr9	131565554	rs1572912	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,10:31:22:0.455:2	0/1:84,61:31:145:0.421:2	./.	0/1:74,54:31:128:0.422:2	0/1:89,70:30:159:0.440:2	0/1:83,93:30:176:0.528:2	0/1:84,66:31:150:0.440:2	0/1:2,101:31:103:0.981:2	./.
chr9	131584631	rs2280844	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,26:31:74:0.351:2	./.	0/1:55,38:31:93:0.409:2	./.	./.	./.
chr9	131584649	rs55985529	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,65:32:155:0.419:2	./.	./.	./.	./.
chr9	131585069	rs2280843	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:32:66:1.00:2	0/1:0,35:32:35:1.00:2	0/1:6,5:34:11:0.455:2	0/1:53,47:33:100:0.470:2	0/1:0,95:32:95:1.00:2	0/1:0,90:32:90:1.00:2	0/1:2,98:32:100:0.980:2	0/1:1,97:32:98:0.990:2	0/1:47,49:33:96:0.510:2	./.	0/1:0,73:32:73:1.00:2
chr9	131586374	rs7033070	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:32:5:0.600:2	0/1:27,28:32:55:0.509:2	./.	./.	./.	./.	0/1:44,35:33:79:0.443:2	0/1:1,38:32:39:0.974:2	./.
chr9	131588652	rs2997914	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,2:34:2:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,98:32:98:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,104:31:104:1.00:2	0/1:0,58:33:58:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,57:32:57:1.00:2
chr9	131588813	rs6478853	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,16:29:49:0.327:2	./.	./.	./.	./.	0/1:27,26:31:53:0.491:2	0/1:0,36:31:36:1.00:2	./.
chr9	131588888	rs6478854	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,9:32:23:0.391:2	./.	0/1:19,8:32:27:0.296:2	./.	0/1:35,23:32:58:0.397:2	0/1:11,15:33:26:0.577:2	0/1:0,26:32:26:1.00:2	./.
chr9	131591372	rs2293967	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,73:29:175:0.417:2	./.	./.	./.	./.	./.
chr9	131600322	rs41275926	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,68:29:134:0.507:2	./.
chr9	131669776	rs16930747	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,38:31:91:0.418:2	./.	0/1:75,78:30:153:0.510:2	./.	./.	./.
chr9	131670457	rs3750320	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,8:31:18:0.444:2	0/1:60,48:32:108:0.444:2	./.	0/1:64,71:31:135:0.526:2	./.	0/1:68,82:31:150:0.547:2	./.	0/1:50,38:32:88:0.432:2	./.
chr9	131670814	rs11999256	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,24:31:52:0.462:2	./.	./.	./.	./.	./.
chr9	131670901	rs11999276	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,50:32:84:0.595:2	./.	./.	./.	./.	./.
chr9	131670919	rs3750319	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,35:30:66:0.530:2	0/1:21,20:31:41:0.488:2	0/1:5,5:32:10:0.500:2	0/1:45,45:32:90:0.500:2	0/1:0,93:31:93:1.00:2	0/1:0,83:30:83:1.00:2	0/1:4,88:31:93:0.957:2	0/1:2,82:31:84:0.976:2	0/1:29,36:32:65:0.554:2	./.	0/1:0,57:30:57:1.00:2
chr9	131670952	rs3750318	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,29:34:78:0.372:2	./.	./.
chr9	131671246	rs16930757	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,73:30:146:0.500:2	./.	./.	./.	./.	./.
chr9	131671438	rs11999752	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,54:30:107:0.505:2	./.	./.	./.	./.	./.
chr9	131678578	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:31:56:0.071:2	./.	./.	./.
chr9	131684640	rs73624815	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,8:30:26:0.308:2	./.	./.	./.	./.	./.
chr9	131689361	rs751340	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:65,70:32:136:0.519:2	0/1:40,40:31:80:0.500:2	./.	0/1:86,84:32:170:0.494:2	./.	0/1:0,178:32:178:1.00:2	0/1:2,180:32:182:0.989:2	0/1:1,177:32:178:0.994:2	0/1:95,83:34:178:0.466:2	0/1:73,73:32:146:0.500:2	./.
chr9	131702891	rs2273866	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:30,29:32:59:0.492:2	0/1:17,13:33:30:0.433:2	./.	0/1:30,20:33:50:0.400:2	./.	0/1:27,23:32:50:0.460:2	0/1:3,59:32:62:0.952:2	0/1:1,61:32:62:0.984:2	0/1:32,30:31:62:0.484:2	0/1:28,37:33:65:0.569:2	./.
chr9	131702955	rs10988159	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,23:32:52:0.442:2	./.	./.	./.	./.	./.
chr9	131709631	rs116439010	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,17:32:48:0.354:2	./.	./.	./.	./.	./.
chr9	131709858	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2
chr9	131721090	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,22:32:43:0.512:2	./.	./.	./.	./.	./.
chr9	131730989	rs189789611	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:32:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	131755891	rs17485583	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,99:31:193:0.513:2	./.	./.	./.	./.
chr9	131757125	rs17481317	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,41:32:68:0.603:2	./.	./.	./.	./.	./.
chr9	131767668	rs2287363	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,16:31:31:0.516:2	0/1:12,15:32:27:0.556:2	0/1:2,3:34:5:0.600:2	0/1:18,23:32:41:0.561:2	./.	0/1:1,49:33:50:0.980:2	0/1:1,40:33:41:0.976:2	0/1:1,47:33:48:0.979:2	0/1:17,22:33:39:0.564:2	0/1:14,15:33:29:0.517:2	./.
chr9	131767806	rs61751465	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:27,21:33:48:0.438:2	0/1:14,10:32:24:0.417:2	./.	./.	./.	./.	./.	./.	./.	0/1:11,12:34:23:0.522:2	./.
chr9	131767939	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:190:0.021:2	./.	./.	./.	./.	./.
chr9	131771505	rs1129098	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:7,11:33:18:0.611:2	0/1:7,12:30:19:0.632:2	./.	0/1:13,13:32:26:0.500:2	./.	0/1:18,7:32:25:0.280:2	0/1:5,4:29:9:0.444:2	0/1:0,22:33:22:1.00:2	0/1:12,10:32:22:0.455:2	0/1:7,7:28:14:0.500:2	./.
chr9	131775316	rs189126211	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,69:33:144:0.479:2	./.	./.	./.	./.	./.	./.
chr9	131798918	rs142576457	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,7:31:13:0.538:2	./.	./.	./.	./.
chr9	131799261	rs11564101	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:29:9:0.667:2	./.	./.	./.	./.	./.	./.	0/1:29,28:27:60:0.491:2	./.
chr9	131804785	rs11544968	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,17:30:29:0.586:2	./.	./.	0/1:9,4:29:13:0.308:2	./.
chr9	131846957	rs11541836	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:30:71:1.00:2	0/1:0,45:29:45:1.00:2	0/1:17,14:31:32:0.452:2	0/1:71,63:30:134:0.470:2	0/1:1,164:29:165:0.994:2	0/1:77,71:30:148:0.480:2	0/1:114,83:29:197:0.421:2	0/1:6,155:30:161:0.963:2	0/1:0,117:30:117:1.00:2	0/1:0,120:29:121:1.00:2	0/1:61,58:29:119:0.487:2
chr9	131859565	rs142099725	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,26:31:48:0.542:2	./.	./.	./.	./.	./.
chr9	131860901	rs3118635	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:32:60:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,93:31:93:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,70:31:70:1.00:2	0/1:0,77:31:77:1.00:2	0/1:0,104:31:104:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,64:32:64:1.00:2
chr9	131866523	rs2228304	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,53:33:132:0.402:2	0/1:80,85:33:165:0.515:2	0/1:157,4:33:161:0.025:2	./.	./.	./.
chr9	131873256	rs3118625	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,53:30:148:0.358:2	./.	./.	./.	./.	./.	./.	0/1:45,53:31:98:0.541:2
chr9	131909736	rs2480452	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,22:30:34:0.647:2
chr9	131939567	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr9	132084427	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:29:94:0.043:2	./.	./.	./.
chr9	132084621	rs913770	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,11:30:23:0.478:2	./.	./.	0/1:23,23:30:46:0.500:2	0/1:17,12:32:29:0.414:2	./.	./.
chr9	132374678	rs3087721	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,30:33:86:0.349:2	./.	./.	./.	./.	./.	./.	0/1:31,30:33:61:0.492:2
chr9	132375432	rs2302779	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,18:31:34:0.529:2	./.	./.	./.	0/1:17,13:31:30:0.433:2	./.
chr9	132377900	rs918165	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,3:29:13:0.231:2	0/1:12,14:32:26:0.538:2	0/1:5,3:32:8:0.375:2	./.	./.	0/1:11,7:32:18:0.389:2	0/1:7,3:32:10:0.300:2
chr9	132400480	rs3739851	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,27:33:27:1.00:2	0/1:0,19:33:19:1.00:2	./.	0/1:1,32:31:33:0.970:2	0/1:10,21:32:31:0.677:2	0/1:10,12:33:22:0.545:2	0/1:24,22:32:46:0.478:2	0/1:0,53:32:53:1.00:2	0/1:0,31:31:31:1.00:2	0/1:15,9:31:24:0.375:2	0/1:7,13:33:20:0.650:2
chr9	132401703	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:30:87:0.046:2	./.	./.	./.
chr9	132402908	rs2241247	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:32:94:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,18:32:18:1.00:2	0/1:2,120:33:122:0.984:2	0/1:0,170:32:170:1.00:2	0/1:0,149:32:149:1.00:2	0/1:0,171:32:171:1.00:2	0/1:0,190:32:190:1.00:2	0/1:0,130:33:130:1.00:2	0/1:0,125:33:125:1.00:2	0/1:0,117:32:117:1.00:2
chr9	132515247	rs11792431	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,8:32:29:0.276:2	./.	./.	./.	./.	0/1:15,5:33:20:0.250:2	./.	./.
chr9	132566536	rs149002140	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,54:30:105:0.514:2	./.
chr9	132569532	rs16936946	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:104,67:31:171:0.392:2	./.	./.	./.	./.	./.	./.
chr9	132569553	rs1043178	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,74:31:139:0.536:2	0/1:54,47:32:101:0.465:2	0/1:16,10:31:26:0.385:2	0/1:90,87:31:177:0.492:2	./.	0/1:91,83:31:175:0.477:2	./.	0/1:3,177:31:181:0.983:2	./.	0/1:103,67:30:170:0.394:2	./.
chr9	132580901	rs1801968	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,61:32:122:0.500:2	./.	./.	./.	./.
chr9	132585058	rs2296793	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:90,55:32:145:0.379:2	0/1:99,92:32:191:0.482:2	./.	0/1:193,4:34:197:0.020:2	./.	./.	./.
chr9	132591509	rs3818553	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,23:28:46:0.500:2	0/1:26,20:30:46:0.435:2	0/1:25,26:29:51:0.510:2	./.	./.	./.	./.
chr9	132595960	rs144757496	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,9:32:35:0.257:2	./.
chr9	132597021	rs3814547	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,8:31:33:0.242:2	0/1:41,26:32:67:0.388:2	0/1:26,20:32:46:0.435:2	./.	./.	./.	./.
chr9	132597062	rs41278736	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:32:9:0.444:2	./.	./.	./.	0/1:12,12:34:24:0.500:2	./.	./.	0/1:10,16:33:26:0.615:2	./.
chr9	132597414	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	132618578	rs4836674	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:31:34:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,50:32:51:1.00:2	0/1:1,44:31:45:0.978:2	0/1:0,37:31:37:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,37:33:37:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,43:32:43:1.00:2
chr9	132618650	rs41278740	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,7:28:10:0.700:2	./.	./.	./.	./.	./.	./.	0/1:32,41:30:73:0.562:2	./.
chr9	132620364	rs10819568	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:29:38:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,12:29:12:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,59:29:59:1.00:2	0/1:0,74:29:74:1.00:2	0/1:0,61:29:61:1.00:2	0/1:0,68:29:68:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,48:30:48:1.00:2
chr9	132620746	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,4:30:101:0.040:2	./.	./.	./.	./.	./.	./.
chr9	132623293	rs1503375	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:31:34:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,44:30:44:1.00:2	0/1:0,37:31:37:1.00:2
chr9	132623868	rs10115249	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:27:59:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,9:28:9:1.00:2	0/1:0,58:29:58:1.00:2	0/1:0,65:28:65:1.00:2	0/1:0,83:28:83:1.00:2	0/1:0,75:28:75:1.00:2	0/1:1,87:28:88:0.989:2	0/1:0,60:28:60:1.00:2	0/1:2,56:29:58:0.966:2	0/1:0,43:27:43:1.00:2
chr9	132631642	rs36055332	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,53:31:132:0.402:2	./.	./.	./.	./.	./.	./.	./.
chr9	132631680	rs6478920	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:29:74:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,11:27:11:1.00:2	0/1:0,118:29:118:1.00:2	0/1:0,141:29:141:1.00:2	0/1:0,128:29:128:1.00:2	0/1:0,110:29:110:1.00:2	0/1:0,114:29:114:1.00:2	0/1:0,96:30:96:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,59:29:59:1.00:2
chr9	132636031	rs4332226	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,12:30:12:1.00:2	0/1:0,13:28:13:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,27:29:27:1.00:2	0/1:2,26:29:28:0.929:2	0/1:28,19:30:47:0.404:2	0/1:0,20:30:20:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,17:28:17:1.00:2
chr9	132636033	rs4415421	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,12:28:12:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,28:28:28:1.00:2	0/1:2,26:29:28:0.929:2	0/1:28,19:30:47:0.404:2	0/1:0,20:28:20:1.00:2	0/1:0,25:29:25:1.00:2	0/1:0,20:28:20:1.00:2	0/1:0,27:28:27:1.00:2	0/1:0,16:27:16:1.00:2
chr9	132637691	rs35071307	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,31:29:50:0.620:2	./.	./.	./.	./.
chr9	132637712	rs735115	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,9:30:13:0.692:2	./.	0/1:35,42:32:77:0.545:2	./.	./.	0/1:0,88:32:88:1.00:2	./.	0/1:15,25:32:40:0.625:2	0/1:16,20:31:36:0.556:2
chr9	132662786	rs1023000	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:31:55:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,8:31:8:1.00:2	0/1:21,33:30:54:0.611:2	0/1:17,43:30:60:0.717:2	0/1:26,33:30:59:0.559:2	0/1:0,44:30:44:1.00:2	./.	0/1:1,73:32:74:0.986:2	0/1:25,39:30:64:0.609:2	./.
chr9	132662825	rs111319812	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,10:32:29:0.345:2	./.	./.	./.	./.	./.
chr9	132686186	rs4836680	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:32:79:1.00:2	0/1:1,45:32:46:0.978:2	0/1:0,14:32:14:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,103:32:103:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,89:32:90:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,95:32:95:1.00:2
chr9	132848699	rs640343	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,27:32:61:0.443:2	./.	./.	./.	./.
chr9	132866764	rs200527400	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,5:27:126:0.040:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	132872686	rs4837460	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:33:82:1.00:2	0/1:0,43:33:43:1.00:2	0/1:0,9:33:9:1.00:2	0/1:1,88:33:89:0.989:2	0/1:0,83:32:83:1.00:2	0/1:0,104:33:104:1.00:2	0/1:29,46:33:75:0.613:2	0/1:0,114:33:114:1.00:2	0/1:0,99:34:99:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,124:34:124:1.00:2
chr9	132988709	rs2277200	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,12:31:23:0.522:2	0/1:5,8:32:13:0.615:2	./.	0/1:14,19:31:33:0.576:2	0/1:31,16:30:48:0.340:2	0/1:25,21:32:47:0.457:2	0/1:23,26:33:49:0.531:2	0/1:11,24:32:35:0.686:2	0/1:14,20:32:34:0.588:2	./.	0/1:13,14:31:27:0.519:2
chr9	133048501	rs6478957	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:29:31:1.00:2	0/1:0,31:31:31:1.00:2	0/1:7,4:32:11:0.364:2	0/1:0,74:30:74:1.00:2	0/1:72,57:29:129:0.442:2	./.	0/1:67,91:30:159:0.576:2	0/1:0,123:31:123:1.00:2	0/1:41,42:29:83:0.506:2	0/1:0,70:31:70:1.00:2	0/1:0,59:30:59:1.00:2
chr9	133057987	rs10988681	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,27:33:67:0.403:2	./.	0/1:31,21:33:52:0.404:2	./.	./.
chr9	133065241	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:34:79:0.051:2
chr9	133069743	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:181,12:33:193:0.062:2	./.	./.	./.	./.	./.	./.	./.
chr9	133069775	rs187454751	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,96:33:182:0.527:2
chr9	133230268	rs117597984	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,15:31:20:0.750:2
chr9	133235901	rs61748916	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,64:31:165:0.388:2	./.	./.	0/1:68,59:31:127:0.465:2
chr9	133235927	rs61748897	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,69:30:169:0.408:2	./.	./.	0/1:71,52:31:123:0.423:2
chr9	133259836	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,36:31:87:0.414:2	0/1:31,25:32:56:0.446:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	133259888	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:32:111:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	133260082	rs61734903	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:25:5:0.600:2	./.	./.	./.	0/1:10,9:30:19:0.474:2	./.	./.	./.	./.
chr9	133294244	rs13294886	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:36,27:30:63:0.429:2	0/1:20,20:31:40:0.500:2	0/1:5,4:29:9:0.444:2	./.	0/1:39,34:29:73:0.466:2	0/1:0,71:29:72:1.00:2	0/1:0,84:30:84:1.00:2	./.	0/1:0,58:30:59:1.00:2	./.	0/1:30,24:28:54:0.444:2
chr9	133305911	rs11244308	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,40:32:98:0.408:2	./.	./.	0/1:35,31:32:67:0.470:2
chr9	133306791	rs35509713	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,32:28:54:0.593:2	./.	./.	0/1:11,29:31:40:0.725:2	./.	./.
chr9	133306833	rs34741230	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,34:31:65:0.523:2	./.	./.	0/1:8,32:32:40:0.800:2	./.	./.
chr9	133307815	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:30:99:0.040:2	./.
chr9	133309014	rs7860727	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,3:30:19:0.158:2	./.	0/1:8,7:28:15:0.467:2	0/1:0,8:31:8:1.00:2	./.	./.
chr9	133346226	rs10901072	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,36:31:62:0.581:2	./.	./.	0/1:23,18:31:41:0.439:2
chr9	133346920	rs652313	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:30:28:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,19:28:19:1.00:2	0/1:0,25:29:25:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,33:30:33:1.00:2	0/1:23,12:27:35:0.343:2	0/1:1,29:30:30:0.967:2	0/1:0,34:30:34:1.00:2	0/1:22,13:31:35:0.371:2
chr9	133364757	rs1057484	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,12:30:29:0.414:2	0/1:11,5:30:16:0.313:2	./.	./.	./.	0/1:13,11:29:24:0.458:2	./.	./.	./.	./.	0/1:22,25:28:47:0.532:2
chr9	133506944	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:33:53:0.075:2	./.
chr9	133511390	rs117877479	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:32:7:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	133511393	rs76482042	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,42:32:83:0.506:2	./.	./.	./.	./.
chr9	133553993	rs7021384	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:40,38:33:78:0.487:2	0/1:25,10:32:35:0.286:2	0/1:0,7:31:7:1.00:2	./.	./.	0/1:63,34:32:97:0.351:2	./.	0/1:77,61:33:138:0.442:2	0/1:0,98:34:98:1.00:2	0/1:48,45:32:93:0.484:2	0/1:0,87:33:87:1.00:2
chr9	133569200	rs148203698	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,13:32:33:0.394:2	0/1:7,9:32:16:0.563:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	133738340	rs34549764	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,47:33:117:0.402:2	./.	./.	./.	./.	./.	./.	./.
chr9	133738359	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,56:30:121:0.463:2	./.	./.	./.	./.
chr9	133759546	rs34717358	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,9:29:21:0.429:2	./.	./.	./.	./.
chr9	133759793	rs143837301	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:30:5:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	133760592	rs2229067	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,11:28:23:0.478:2	./.	./.	./.	./.
chr9	133760617	rs11558834	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,14:32:32:0.438:2	./.	./.	./.	./.	./.	./.	./.
chr9	133761001	rs1056171	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,15:27:50:0.300:2	0/1:17,15:27:32:0.469:2	0/1:0,6:29:6:1.00:2	0/1:2,54:29:56:0.964:2	0/1:39,41:28:80:0.513:2	./.	0/1:40,28:28:68:0.412:2	0/1:49,27:29:76:0.355:2	0/1:33,23:29:56:0.411:2	./.	./.
chr9	133768987	rs111763002	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,40:32:90:0.444:2	./.	./.	./.	./.
chr9	133769169	rs3847193	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,8:31:16:0.500:2	0/1:59,33:31:92:0.359:2	0/1:52,51:31:103:0.495:2	./.	0/1:55,54:31:109:0.495:2	./.	0/1:62,51:32:113:0.451:2	./.	0/1:48,29:30:77:0.377:2
chr9	133779448	rs11792889	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,14:30:14:1.00:2	./.	0/1:64,55:29:119:0.462:2	./.	0/1:55,38:30:93:0.409:2	./.	0/1:51,30:30:81:0.370:2	./.	0/1:53,32:28:85:0.376:2
chr9	133780768	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,4:33:78:0.051:2	./.	./.	./.	./.	./.	./.	./.
chr9	133787225	rs6597650	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,30:29:58:0.517:2	0/1:20,20:29:40:0.500:2	0/1:7,6:31:13:0.462:2	0/1:0,75:29:75:1.00:2	0/1:37,23:30:60:0.383:2	./.	./.	./.	./.	./.	0/1:23,7:29:30:0.233:2
chr9	133884820	rs3739512	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.	./.	./.	./.
chr9	133901819	rs2275137	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,23:31:45:0.511:2	./.	./.	./.	./.	./.
chr9	133901820	rs2275136	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,23:32:45:0.511:2	./.	./.	./.	./.	./.
chr9	133911598	rs2275132	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,10:32:33:0.303:2	0/1:17,7:30:24:0.292:2	0/1:0,4:33:4:1.00:2	0/1:20,12:32:32:0.375:2	0/1:0,37:31:37:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,19:29:19:1.00:2	0/1:2,31:30:33:0.939:2	0/1:0,24:31:24:1.00:2	0/1:0,25:31:25:1.00:2	./.
chr9	133911706	rs2275131	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,10:31:36:0.278:2	0/1:17,17:31:34:0.500:2	0/1:0,10:31:10:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,64:31:64:1.00:2	./.	0/1:0,64:31:64:1.00:2	0/1:21,33:33:54:0.611:2	0/1:13,7:30:20:0.350:2	./.
chr9	133914570	rs2293518	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,40:33:76:0.526:2	./.	0/1:44,38:33:82:0.463:2	./.	0/1:1,96:32:97:0.990:2	0/1:43,16:32:59:0.271:2	./.	0/1:29,33:33:62:0.532:2
chr9	133924451	rs869457	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,39:32:60:0.650:2	./.	0/1:22,24:32:46:0.522:2	./.	0/1:41,32:32:73:0.438:2	0/1:26,39:32:66:0.600:2	0/1:14,30:31:44:0.682:2	./.
chr9	133927878	rs10901333	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,15:30:33:0.455:2	./.	0/1:23,12:32:35:0.343:2	./.	0/1:23,16:32:39:0.410:2	0/1:20,23:34:43:0.535:2	0/1:21,17:32:38:0.447:2	./.
chr9	133928345	rs12349966	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,6:31:20:0.300:2	./.	0/1:19,13:31:32:0.406:2	./.	0/1:13,25:31:38:0.658:2	0/1:9,14:31:23:0.609:2	0/1:11,17:31:28:0.607:2	./.
chr9	133936571	rs3739510	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:31:24:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,27:29:27:1.00:2	0/1:12,4:31:16:0.250:2	0/1:0,33:31:33:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,35:30:35:1.00:2	0/1:12,10:31:22:0.455:2	0/1:3,8:30:11:0.727:2	0/1:0,15:30:15:1.00:2
chr9	133942516	rs140540789	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,36:33:66:0.545:2
chr9	133942558	rs34652877	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,30:30:59:0.508:2	./.
chr9	133946909	rs10901344	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,31:31:32:1.00:2	0/1:0,25:31:25:1.00:2	0/1:6,3:31:9:0.333:2	./.	0/1:40,34:31:74:0.459:2	0/1:33,18:30:51:0.353:2	0/1:0,66:31:66:1.00:2	./.	./.	./.	0/1:31,24:31:55:0.436:2
chr9	133946915	rs10901345	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,29:32:29:1.00:2	0/1:0,24:33:24:1.00:2	0/1:6,3:34:9:0.333:2	./.	0/1:37,33:32:70:0.471:2	0/1:32,18:30:50:0.360:2	0/1:0,58:33:58:1.00:2	./.	./.	./.	0/1:29,24:32:53:0.453:2
chr9	133948049	rs2275140	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:29:61:1.00:2	0/1:0,17:30:17:1.00:2	0/1:1,5:25:6:0.833:2	0/1:0,50:32:50:1.00:2	0/1:1,42:32:43:0.977:2	0/1:0,45:31:45:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,43:31:43:1.00:2	0/1:21,24:33:45:0.533:2	0/1:24,21:32:45:0.467:2	0/1:0,40:31:40:1.00:2
chr9	133954548	rs11244275	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,83:32:186:0.446:2	./.	./.	./.	./.
chr9	133961026	rs147092908	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,44:32:86:0.512:2
chr9	133962930	rs7024108	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,114:31:114:1.00:2	0/1:44,55:30:99:0.556:2	0/1:40,68:30:108:0.630:2	./.	0/1:0,83:31:83:1.00:2	0/1:28,46:31:74:0.622:2	0/1:30,44:32:74:0.595:2	0/1:25,33:31:58:0.569:2
chr9	133963008	rs4740412	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:22,22:31:44:0.500:2	0/1:7,11:31:18:0.611:2	0/1:3,3:32:6:0.500:2	./.	./.	0/1:22,19:31:41:0.463:2	0/1:0,32:32:32:1.00:2	./.	./.	./.	./.
chr9	133986980	rs353526	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:32:23:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,21:34:21:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,22:33:22:1.00:2	0/1:0,27:33:27:1.00:2
chr9	133987060	rs353525	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:32:16:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,25:33:25:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,19:32:19:1.00:2
chr9	133995629	rs112844133	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,17:30:45:0.378:2	0/1:11,17:32:28:0.607:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	133996460	rs111758824	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,18:31:54:0.333:2	0/1:16,23:32:39:0.590:2	0/1:1,7:32:8:0.875:2	0/1:46,47:33:93:0.505:2	0/1:29,31:32:60:0.517:2	0/1:32,37:32:69:0.536:2	0/1:0,64:32:64:1.00:2	0/1:64,46:32:110:0.418:2	0/1:2,61:33:63:0.968:2	0/1:1,92:32:93:0.989:2	0/1:42,25:32:67:0.373:2
chr9	133996503	rs353510	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:31:55:1.00:2	0/1:0,33:32:33:1.00:2	0/1:1,7:29:8:0.875:2	0/1:50,43:31:93:0.462:2	0/1:49,31:31:80:0.388:2	0/1:44,34:30:78:0.436:2	0/1:1,64:31:65:0.985:2	0/1:67,52:31:119:0.437:2	0/1:1,61:32:62:0.984:2	0/1:0,86:32:86:1.00:2	0/1:43,29:31:72:0.403:2
chr9	134001158	rs77164468	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,36:33:91:0.400:2	0/1:36,42:32:78:0.538:2	./.	./.	./.	./.	./.	./.	0/1:90,82:32:173:0.477:2	./.	./.
chr9	134020092	rs103612	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,35:31:62:0.565:2	0/1:12,22:31:34:0.647:2	0/1:0,9:29:9:1.00:2	0/1:34,29:32:63:0.460:2	0/1:28,28:31:56:0.500:2	./.	0/1:0,47:30:47:1.00:2	0/1:43,53:31:96:0.552:2	0/1:0,86:31:86:1.00:2	0/1:1,65:30:66:0.985:2	0/1:31,34:31:65:0.523:2
chr9	134021630	rs2296710	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:40,42:28:82:0.512:2	0/1:33,25:29:58:0.431:2	./.	0/1:52,57:29:109:0.523:2	0/1:98,74:29:173:0.430:2	0/1:1,114:30:115:0.991:2	./.	0/1:85,98:30:184:0.536:2	./.	./.	0/1:55,43:28:99:0.439:2
chr9	134062733	rs61751471	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,38:27:83:0.458:2	0/1:34,26:26:60:0.433:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	134073807	rs61751472	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,20:28:52:0.385:2	0/1:21,15:28:36:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	134136248	rs9966	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,21:30:35:0.600:2	0/1:4,6:31:10:0.600:2	./.	./.	./.	./.	./.	./.	0/1:15,18:31:33:0.545:2	0/1:24,15:29:39:0.385:2	0/1:11,14:31:25:0.560:2
chr9	134136515	rs352952	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,84:33:84:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,176:33:176:1.00:2	0/1:0,173:32:173:1.00:2	0/1:0,167:32:167:1.00:2	0/1:0,177:33:177:1.00:2	0/1:0,180:32:180:1.00:2	0/1:0,147:33:147:1.00:2	0/1:0,129:32:129:1.00:2	0/1:0,109:32:109:1.00:2
chr9	134136677	rs352951	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:30:25:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,61:30:61:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,31:29:31:1.00:2
chr9	134183379	rs2966332	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,6:31:6:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,2:30:2:1.00:2	./.	0/1:2,6:31:8:0.750:2	0/1:0,12:31:12:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,19:30:19:1.00:2	0/1:2,4:32:6:0.667:2	0/1:0,10:31:10:1.00:2	./.
chr9	134183503	rs2986606	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,19:30:19:1.00:2	0/1:0,9:28:9:1.00:2	0/1:0,3:31:3:1.00:2	./.	0/1:9,5:29:14:0.357:2	0/1:0,10:32:10:1.00:2	./.	0/1:0,8:30:8:1.00:2	0/1:8,9:29:17:0.529:2	0/1:0,9:30:9:1.00:2	0/1:0,2:30:2:1.00:2
chr9	134305641	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:34:88:0.045:2	./.	./.	./.	./.	./.
chr9	134334588	rs34553878	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,41:33:87:0.471:2	./.	0/1:61,65:32:127:0.516:2	0/1:55,56:32:111:0.505:2	./.	./.	./.	./.
chr9	134346315	rs4310250	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,118:33:118:1.00:2	0/1:0,55:32:55:1.00:2	0/1:3,15:33:18:0.833:2	0/1:0,167:33:167:1.00:2	0/1:0,167:33:167:1.00:2	0/1:0,186:33:186:1.00:2	0/1:1,182:33:183:0.995:2	0/1:87,87:33:174:0.500:2	0/1:0,136:33:136:1.00:2	0/1:0,149:33:149:1.00:2	0/1:0,130:32:130:1.00:2
chr9	134349860	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:32:108:0.037:2	./.	./.	./.	./.	./.
chr9	134349941	rs374552895	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:29:106:0.038:2	./.	./.
chr9	134350231	rs17458486	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,19:30:38:0.500:2	./.	./.	./.
chr9	134350323	rs10736851	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,4:32:8:0.500:2	0/1:3,3:30:6:0.500:2	./.	0/1:6,13:32:19:0.684:2	0/1:0,9:32:9:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,3:24:3:1.00:2	0/1:5,7:32:12:0.583:2	./.	0/1:2,10:31:12:0.833:2	0/1:6,11:32:17:0.647:2
chr9	134350458	rs10751478	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,6:31:23:0.261:2	0/1:15,4:32:19:0.211:2	0/1:3,7:31:10:0.700:2	0/1:14,14:32:28:0.500:2	0/1:1,24:32:25:0.960:2	0/1:0,36:31:36:1.00:2	0/1:0,42:31:42:1.00:2	0/1:20,29:32:49:0.592:2	0/1:12,11:34:23:0.478:2	0/1:0,23:32:23:1.00:2	0/1:8,12:30:20:0.600:2
chr9	134350647	rs10793873	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:30:33:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,60:30:61:1.00:2	0/1:0,23:29:23:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,33:31:33:1.00:2	0/1:1,52:29:53:0.981:2	0/1:0,49:30:49:1.00:2	0/1:0,44:29:44:1.00:2	0/1:0,69:30:69:1.00:2
chr9	134351065	rs7858488	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,10:30:10:1.00:2	0/1:0,8:28:8:1.00:2	./.	0/1:0,18:31:18:1.00:2	0/1:0,24:29:24:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,18:30:18:1.00:2	0/1:5,8:31:14:0.615:2	0/1:1,14:29:15:0.933:2	0/1:0,14:30:14:1.00:2	0/1:0,25:28:25:1.00:2
chr9	134351343	rs11243403	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,20:31:20:1.00:2	0/1:0,13:32:13:1.00:2	./.	0/1:1,25:30:26:0.962:2	0/1:16,12:31:28:0.429:2	0/1:18,12:32:30:0.400:2	0/1:14,13:32:27:0.481:2	0/1:14,17:31:31:0.548:2	0/1:1,30:32:31:0.968:2	0/1:0,14:33:14:1.00:2	0/1:16,15:32:31:0.484:2
chr9	134351500	rs113338693	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,9:33:13:0.692:2	./.	./.	./.
chr9	134351770	rs78591540	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:10,7:32:17:0.412:2	0/1:10,6:32:16:0.375:2	./.	0/1:11,13:30:24:0.542:2	./.	./.	./.	./.	0/1:20,13:31:33:0.394:2	./.	0/1:20,7:32:27:0.259:2
chr9	134358108	rs2275498	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.	./.	./.	0/1:9,9:31:18:0.500:2	./.	./.	./.
chr9	134366901	rs183938437	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,18:30:39:0.462:2	./.	./.	./.	./.	./.
chr9	134371165	rs41296113	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,6:29:11:0.545:2	./.	./.	./.
chr9	134385435	rs3887873	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:39,34:32:73:0.466:2	0/1:22,33:32:55:0.600:2	./.	0/1:62,53:32:115:0.461:2	./.	./.	./.	./.	0/1:49,32:32:81:0.395:2	./.	./.
chr9	134385436	rs2296949	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:31:73:1.00:2	0/1:0,54:31:54:1.00:2	0/1:6,5:32:11:0.455:2	0/1:0,112:31:112:1.00:2	0/1:0,87:31:87:1.00:2	0/1:0,88:29:88:1.00:2	0/1:0,90:31:90:1.00:2	0/1:58,51:30:109:0.468:2	0/1:0,76:32:76:1.00:2	0/1:0,64:30:64:1.00:2	0/1:1,78:30:79:0.987:2
chr9	134386744	rs10901065	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:32:32:1.00:2	0/1:0,23:31:23:1.00:2	0/1:6,4:32:10:0.400:2	0/1:0,60:32:60:1.00:2	0/1:1,64:32:65:0.985:2	0/1:0,59:31:59:1.00:2	0/1:0,74:33:74:1.00:2	0/1:43,33:32:76:0.434:2	0/1:0,58:33:58:1.00:2	0/1:0,38:33:38:1.00:2	0/1:1,75:32:76:0.987:2
chr9	134386781	rs4740164	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:30:13:0.538:2	./.	./.	./.	./.	0/1:45,55:30:100:0.550:2	./.	./.	./.
chr9	134387488	rs3739494	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:29:47:1.00:2	0/1:0,31:29:31:1.00:2	0/1:2,3:27:5:0.600:2	0/1:1,57:30:58:0.983:2	0/1:0,58:29:58:1.00:2	0/1:0,69:29:69:1.00:2	0/1:0,71:29:71:1.00:2	0/1:57,53:30:110:0.482:2	0/1:0,56:30:56:1.00:2	0/1:0,45:28:45:1.00:2	0/1:0,51:30:51:1.00:2
chr9	134390832	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,31:28:81:0.383:2	./.	./.	./.	./.	./.	./.	./.
chr9	134390870	rs11243406	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,30:32:64:0.476:2	./.	./.
chr9	134395574	rs34954751	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,23:30:63:0.365:2	./.	0/1:2,29:31:31:0.935:2	./.
chr9	134397464	rs12115566	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,47:29:104:0.461:2
chr9	134401335	rs2296957	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:31:40:1.00:2	0/1:0,18:31:18:1.00:2	0/1:2,3:31:5:0.600:2	0/1:0,57:31:57:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,54:31:54:1.00:2	0/1:50,35:31:85:0.412:2	0/1:0,61:32:61:1.00:2	0/1:0,49:32:49:1.00:2	0/1:33,30:31:63:0.476:2
chr9	134406071	rs7867616	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,35:32:60:0.583:2	0/1:20,10:32:30:0.333:2	0/1:0,11:32:11:1.00:2	0/1:25,22:31:47:0.468:2	0/1:0,63:30:63:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,70:32:70:1.00:2	0/1:31,32:32:63:0.508:2	0/1:0,56:32:56:1.00:2	0/1:1,46:31:47:0.979:2
chr9	134463198	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,4:33:107:0.037:2	./.	./.	./.	./.	./.	./.	./.
chr9	134463412	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,3:30:16:0.188:2	./.
chr9	134471752	rs200827749	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:33:80:0.050:2	./.	./.	./.	./.	./.
chr9	134473655	rs11243446	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,38:32:77:0.494:2
chr9	134501651	rs113690899	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,10:31:16:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	134504631	rs200382304	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,35:31:73:0.479:2	0/1:26,14:32:40:0.350:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	134769346	rs367842385	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:139,4:31:143:0.028:2	./.	./.	./.	./.	./.	./.
chr9	134889748	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:150,4:32:154:0.026:2	./.	./.	./.	./.	./.	./.
chr9	134889767	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:32:168:0.024:2	./.
chr9	134952884	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,6:30:82:0.073:2	./.	./.	./.	./.	./.	./.
chr9	134955076	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:110,19:32:129:0.147:2	./.	./.	./.	0/1:91,17:32:108:0.157:2	0/1:58,7:31:65:0.108:2	./.
chr9	135073877	rs3824574	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,3:32:9:0.333:2	0/1:38,33:29:71:0.465:2	./.	./.	0/1:20,19:30:39:0.487:2	0/1:25,35:30:60:0.583:2	0/1:21,27:31:48:0.563:2	./.	./.
chr9	135073967	rs3739930	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,31:31:87:0.356:2	0/1:61,36:30:97:0.371:2	./.	0/1:92,49:31:141:0.348:2	0/1:47,28:31:75:0.373:2	./.	0/1:0,62:32:62:1.00:2
chr9	135102254	rs2149171	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,9:30:14:0.643:2	0/1:0,87:31:87:1.00:2	0/1:2,142:31:144:0.986:2	0/1:0,83:31:83:1.00:2	0/1:34,60:31:94:0.638:2	0/1:0,126:31:126:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,58:32:58:1.00:2
chr9	135105944	rs2274855	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,39:31:39:1.00:2	0/1:0,25:30:25:1.00:2	./.	./.	./.	./.	0/1:17,24:31:41:0.585:2	./.	./.	./.	./.
chr9	135105964	rs4962173	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:29:36:1.00:2	0/1:0,26:29:26:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,57:29:57:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,54:28:54:1.00:2	0/1:0,46:28:46:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,24:29:24:1.00:2
chr9	135139826	rs3739927	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:12,13:27:25:0.520:2	0/1:7,6:29:13:0.462:2	./.	./.	0/1:20,16:28:36:0.444:2	./.	0/1:19,21:26:40:0.525:2	./.	./.	./.	0/1:24,13:25:37:0.351:2
chr9	135139901	rs1056899	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,22:31:22:1.00:2	0/1:0,11:31:11:1.00:2	./.	0/1:7,21:30:28:0.750:2	0/1:5,7:31:12:0.583:2	./.	0/1:13,10:30:23:0.435:2	0/1:17,3:32:20:0.150:2	0/1:6,12:31:18:0.667:2	./.	0/1:13,7:33:20:0.350:2
chr9	135140096	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,69:32:167:0.413:2	./.	./.	./.
chr9	135172412	rs2296869	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,72:32:72:1.00:2	0/1:0,42:31:42:1.00:2	./.	./.	0/1:33,31:31:64:0.484:2	./.	0/1:54,38:32:92:0.413:2	./.	./.	./.	0/1:72,41:32:113:0.363:2
chr9	135173512	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:30:120:0.033:2	./.	./.	./.
chr9	135173685	rs2296871	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,40:33:40:1.00:2	0/1:0,33:32:33:1.00:2	./.	./.	0/1:22,15:33:37:0.405:2	./.	0/1:15,14:33:29:0.483:2	./.	./.	./.	0/1:28,46:32:74:0.622:2
chr9	135202230	rs151237267	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,28:29:84:0.333:2	./.	./.	./.	./.	./.
chr9	135202552	rs143661911	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,66:31:153:0.431:2	./.	./.	./.	./.
chr9	135202829	rs543573	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:28:7:1.00:2	0/1:1,108:28:109:0.991:2	0/1:38,33:28:71:0.465:2	0/1:1,119:28:120:0.992:2	0/1:38,49:28:87:0.563:2	0/1:1,102:28:103:0.990:2	0/1:1,113:29:114:0.991:2	0/1:0,94:29:94:1.00:2	0/1:75,59:29:134:0.440:2
chr9	135203231	rs1183768	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:32:11:1.00:2	0/1:1,68:32:69:0.986:2	0/1:38,13:33:51:0.255:2	0/1:0,62:32:62:1.00:2	0/1:42,19:33:61:0.311:2	0/1:3,38:32:41:0.927:2	0/1:0,89:33:89:1.00:2	0/1:0,57:32:57:1.00:2	0/1:88,48:33:136:0.353:2
chr9	135203409	rs1185193	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:32:8:1.00:2	0/1:1,49:33:50:0.980:2	0/1:25,16:33:41:0.390:2	0/1:1,48:33:49:0.980:2	0/1:23,29:33:52:0.558:2	0/1:0,49:33:49:1.00:2	0/1:1,61:33:62:0.984:2	0/1:0,34:33:34:1.00:2	0/1:53,37:33:90:0.411:2
chr9	135203838	rs3739921	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,21:31:55:0.382:2	0/1:17,13:31:30:0.433:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	135204249	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:33:84:0.048:2	./.	./.
chr9	135205006	rs882709	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:83,46:33:129:0.357:2	0/1:33,29:32:62:0.468:2	./.	./.	0/1:71,35:32:106:0.330:2	./.	0/1:63,34:31:97:0.351:2	./.	./.	./.	0/1:103,78:32:182:0.431:2
chr9	135206460	rs9411449	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,22:32:22:1.00:2	0/1:9,14:32:23:0.609:2	0/1:0,36:32:36:1.00:2	0/1:11,5:32:16:0.313:2	0/1:0,21:32:21:1.00:2	0/1:1,34:34:35:0.971:2	0/1:1,36:33:37:0.973:2	0/1:38,28:33:66:0.424:2
chr9	135211702	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:33:114:0.035:2	./.	./.
chr9	135251366	rs1752676	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:30:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	135263573	rs556386	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:32:25:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,51:30:51:1.00:2
chr9	135273607	rs504525	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,99:32:100:0.990:2	0/1:0,64:32:64:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,120:32:120:1.00:2	0/1:1,71:31:72:0.986:2	0/1:0,99:32:99:1.00:2	0/1:0,78:33:78:1.00:2	0/1:59,63:32:124:0.516:2	0/1:0,103:33:103:1.00:2	0/1:56,45:33:101:0.446:2	0/1:1,161:32:162:0.994:2
chr9	135277007	rs3739916	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,75:33:196:0.383:2	./.	./.
chr9	135277130	rs3739915	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,61:29:127:0.480:2	0/1:64,62:29:126:0.492:2	./.	0/1:68,62:30:130:0.477:2
chr9	135277341	rs8999	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,28:29:63:0.444:2	./.	./.	./.
chr9	135374898	rs562350	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,72:29:72:1.00:2	0/1:0,30:28:30:1.00:2	./.	0/1:41,49:29:90:0.544:2	0/1:60,48:29:108:0.444:2	./.	./.	./.	0/1:0,76:30:76:1.00:2	0/1:0,68:29:68:1.00:2	./.
chr9	135413085	rs34650498	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,12:32:34:0.353:2	./.	0/1:15,17:33:32:0.531:2	./.	./.	./.	./.
chr9	135462765	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:27:38:0.105:2	./.	./.	./.	./.	./.
chr9	135470414	rs306547	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:29:74:1.00:2	0/1:0,38:29:38:1.00:2	0/1:8,8:30:16:0.500:2	0/1:69,59:29:128:0.461:2	0/1:0,74:30:74:1.00:2	0/1:4,98:29:102:0.961:2	0/1:0,101:29:101:1.00:2	0/1:55,49:29:104:0.471:2	0/1:0,113:30:113:1.00:2	./.	0/1:0,127:28:127:1.00:2
chr9	135470473	rs35447016	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,28:31:68:0.412:2	./.
chr9	135517399	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:31:104:0.038:2	./.	./.	./.	./.	./.
chr9	135521303	rs306537	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,22:32:58:0.379:2	./.	./.
chr9	135521364	rs112468660	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:29:100:0.040:2	./.	./.	./.
chr9	135538050	rs35918594	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,22:32:39:0.564:2	./.	./.	./.	./.	./.	./.	./.
chr9	135546021	rs146201597	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.
chr9	135546255	rs140834695	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,55:30:94:0.585:2	./.	./.	./.
chr9	135554566	rs371169	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,39:32:55:0.709:2	./.	./.	0/1:24,23:32:47:0.489:2	./.	0/1:1,54:33:55:0.982:2	./.	0/1:46,33:33:79:0.418:2
chr9	135555136	rs139080117	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,31:32:54:0.574:2	./.	./.	./.	./.	./.	./.	./.
chr9	135602886	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,55:30:138:0.399:2	./.	./.	./.
chr9	135668029	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:30:73:0.055:2	./.
chr9	135668160	rs150636539	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,51:31:107:0.477:2	./.	./.	./.	./.	./.	./.	./.
chr9	135730257	rs17407084	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:92,76:31:168:0.452:2	./.	0/1:172,4:33:176:0.023:2	./.	./.	./.	./.
chr9	135753629	rs2231400	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,36:32:96:0.375:2	./.	./.	./.	./.	./.	./.
chr9	135763794	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,60:32:118:0.508:2
chr9	135763816	rs2073869	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,11:30:18:0.611:2	0/1:72,83:31:155:0.535:2	./.	0/1:73,77:31:150:0.513:2	./.	./.	./.	./.	0/1:47,54:31:101:0.535:2
chr9	135772717	rs4962081	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:31:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	135782221	rs7862221	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,17:33:34:0.500:2	0/1:12,13:32:25:0.520:2	./.	0/1:16,14:32:30:0.467:2	./.	./.	./.	0/1:24,37:33:61:0.607:2
chr9	135786394	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:33:101:0.040:2
chr9	135786904	rs1073123	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,55:30:126:0.437:2	0/1:71,72:29:143:0.503:2	./.	0/1:70,58:30:128:0.453:2	./.	./.	./.	0/1:45,57:30:102:0.559:2
chr9	135895156	rs148740450	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	./.	./.	0/1:0,3:32:3:1.00:2	0/1:1,2:33:3:0.667:2	0/1:1,4:33:5:0.800:2	./.
chr9	135895217	rs375354028	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:33:5:0.600:2	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	./.	./.
chr9	135895245	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,2:34:5:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	135895382	rs201332355	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,6:29:16:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:27:8:0.500:2
chr9	135895592	rs199570423	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:116,4:32:120:0.033:2	0/1:76,7:32:83:0.084:2	./.	0/1:125,4:30:129:0.031:2	./.	./.	0/1:145,4:32:149:0.027:2	0/1:142,7:31:149:0.047:2	./.	0/1:134,7:32:141:0.050:2	0/1:128,9:31:137:0.066:2
chr9	135895642	rs191769526	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:116,66:31:182:0.363:2	0/1:71,40:31:111:0.360:2	./.	./.	0/1:111,63:31:174:0.362:2	./.	0/1:134,58:31:192:0.302:2	./.	./.	./.	./.
chr9	135895805	rs117959031	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,33:31:34:0.971:2	0/1:0,23:32:23:1.00:2	./.	./.	0/1:103,10:31:113:0.088:2	./.	0/1:108,9:30:117:0.077:2	./.	0/1:114,19:32:133:0.143:2	0/1:130,17:32:147:0.116:2	0/1:117,17:32:134:0.127:2
chr9	135895937	rs200773551	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:25,4:32:29:0.138:2	./.	./.	./.	0/1:28,3:31:31:0.097:2	./.	0/1:35,5:33:40:0.125:2	./.	./.	./.	./.
chr9	135895949	rs151323788	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:31:8:1.00:2	0/1:9,13:30:22:0.591:2	./.	0/1:37,20:30:57:0.351:2	0/1:22,3:31:25:0.120:2	0/1:1,38:31:39:0.974:2	0/1:26,13:32:39:0.333:2	./.	0/1:32,23:31:55:0.418:2
chr9	135895966	rs139763728	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,12:31:12:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,7:28:7:1.00:2	0/1:0,20:28:20:1.00:2	./.	0/1:32,20:28:52:0.385:2	0/1:11,4:29:15:0.267:2	0/1:0,31:29:31:1.00:2	0/1:1,24:29:25:0.960:2	0/1:28,10:29:38:0.263:2	0/1:0,38:28:38:1.00:2
chr9	135896157	rs4000879	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,10:33:79:0.127:2	./.	./.	0/1:53,9:32:62:0.145:2	./.	./.	./.	./.
chr9	135896317	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,4:33:12:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	135929882	rs368226509	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,34:32:98:0.347:2	./.
chr9	135931485	rs187879215	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,16:32:50:0.320:2	./.	./.	./.	./.	./.	./.	./.
chr9	135937449	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,31:31:120:0.258:2	./.	0/1:106,11:33:117:0.094:2	./.	./.
chr9	135939911	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,4:31:75:0.053:2	./.	./.	./.	./.	./.	./.	./.
chr9	135944195	rs201748116	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,7:32:35:0.200:2	./.	./.	./.	0/1:145,50:32:195:0.256:2	./.	0/1:140,45:33:185:0.243:2	./.	./.
chr9	135944524	rs201255412	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,10:32:23:0.435:2	0/1:79,89:32:168:0.530:2	0/1:120,33:32:153:0.216:2	./.	0/1:146,18:31:164:0.110:2	0/1:93,68:32:161:0.422:2	0/1:147,25:33:172:0.145:2	./.	./.
chr9	135944577	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,18:31:116:0.158:2
chr9	135944586	rs200119384	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:83,21:31:104:0.202:2	0/1:35,18:32:53:0.340:2	./.	0/1:103,34:31:137:0.248:2	0/1:53,56:31:109:0.514:2	0/1:72,58:31:130:0.446:2	./.	0/1:75,68:31:143:0.476:2	./.	./.	0/1:75,32:31:107:0.299:2
chr9	135945890	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,6:25:130:0.046:2	./.	./.	./.	./.
chr9	135945988	rs201074543	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:81,4:28:85:0.047:2	./.	0/1:185,10:27:195:0.051:2	0/1:174,20:26:194:0.103:2	0/1:168,15:25:183:0.082:2	./.	0/1:182,13:26:195:0.067:2	./.	./.	./.
chr9	135945997	rs201677850	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:123,8:32:131:0.061:2	0/1:78,6:31:84:0.071:2	./.	0/1:181,11:30:193:0.057:2	0/1:172,23:29:195:0.118:2	0/1:165,25:30:190:0.132:2	./.	0/1:181,15:29:197:0.077:2	./.	./.	0/1:179,6:31:185:0.032:2
chr9	135946015	rs77696629	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:135,11:29:146:0.075:2	0/1:81,7:30:88:0.080:2	./.	0/1:175,15:31:190:0.079:2	0/1:161,35:30:196:0.179:2	0/1:151,37:30:188:0.197:2	0/1:99,84:32:183:0.459:2	0/1:164,30:31:194:0.155:2	0/1:163,21:32:184:0.114:2	0/1:113,10:30:123:0.081:2	0/1:172,14:30:186:0.075:2
chr9	135946599	rs488087	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:30:10:1.00:2	0/1:2,8:28:10:0.800:2	./.	./.	0/1:0,14:31:14:1.00:2	./.	./.	./.
chr9	135974079	rs1062356	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:84,78:33:162:0.481:2	0/1:52,33:33:85:0.388:2	0/1:0,26:34:26:1.00:2	0/1:0,181:33:181:1.00:2	0/1:0,187:33:187:1.00:2	0/1:0,185:33:185:1.00:2	0/1:131,64:33:195:0.328:2	0/1:0,180:33:180:1.00:2	0/1:0,135:34:135:1.00:2	0/1:0,122:33:122:1.00:2	0/1:88,94:33:182:0.516:2
chr9	135974100	rs886017	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,15:31:26:0.577:2	./.	./.	./.	0/1:134,53:32:187:0.283:2	0/1:108,80:32:188:0.426:2	0/1:0,142:33:142:1.00:2	0/1:0,126:33:126:1.00:2	./.
chr9	135977511	rs35267131	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,21:30:38:0.553:2	./.
chr9	135977920	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:34:112:0.036:2	./.	./.	./.	./.
chr9	135982088	rs2073822	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:61,36:31:97:0.371:2	0/1:25,27:30:52:0.519:2	./.	0/1:64,57:30:121:0.471:2	0/1:0,135:29:135:1.00:2	0/1:4,129:29:133:0.970:2	./.	0/1:2,116:29:118:0.983:2	./.	./.	0/1:45,46:29:91:0.505:2
chr9	135982633	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.	./.	./.	./.	./.
chr9	135983504	rs2285375	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,28:30:68:0.412:2	0/1:15,18:29:33:0.545:2	0/1:6,5:30:11:0.455:2	0/1:47,37:29:84:0.440:2	0/1:3,80:29:83:0.964:2	0/1:0,72:30:72:1.00:2	./.	0/1:0,90:30:90:1.00:2	./.	./.	0/1:45,32:30:77:0.416:2
chr9	135985796	rs3761824	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,19:30:40:0.475:2	./.	./.	0/1:35,29:30:64:0.453:2	./.	0/1:23,22:31:45:0.489:2	0/1:16,15:32:31:0.484:2	./.
chr9	136029138	rs35902535	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,28:30:66:0.424:2	0/1:18,15:29:33:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	136029418	rs150021604	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,21:32:47:0.447:2	0/1:10,18:31:28:0.643:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	136031346	rs2073927	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,49:32:51:0.961:2	0/1:1,31:32:32:0.969:2	0/1:0,6:31:6:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,84:32:84:1.00:2	0/1:45,47:32:92:0.511:2	./.	0/1:0,100:32:100:1.00:2	0/1:38,31:33:69:0.449:2	./.	./.
chr9	136037742	rs2073924	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,22:31:23:0.957:2	0/1:2,23:31:25:0.920:2	0/1:0,10:32:10:1.00:2	0/1:27,31:31:58:0.534:2	./.	./.	./.	./.	0/1:25,20:33:45:0.444:2	./.	./.
chr9	136081283	rs147134232	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,51:30:107:0.477:2	0/1:40,24:30:64:0.375:2	0/1:10,8:30:18:0.444:2	0/1:109,38:30:147:0.259:2	0/1:103,29:30:132:0.220:2	0/1:139,27:30:166:0.163:2	0/1:95,29:30:125:0.234:2	0/1:104,33:31:137:0.241:2	0/1:78,39:32:118:0.333:2	./.	./.
chr9	136081289	rs146582704	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,49:32:106:0.462:2	0/1:45,25:32:70:0.357:2	0/1:11,8:33:19:0.421:2	0/1:110,35:32:145:0.241:2	0/1:112,30:32:142:0.211:2	0/1:143,27:33:170:0.159:2	0/1:103,30:32:133:0.226:2	0/1:107,33:32:141:0.236:2	0/1:90,37:33:127:0.291:2	./.	./.
chr9	136081319	rs11244035	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,43:32:127:0.339:2	./.	./.
chr9	136081356	rs148158748	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:50,24:32:74:0.324:2	0/1:41,16:31:57:0.281:2	./.	0/1:87,23:33:110:0.209:2	0/1:92,9:31:101:0.089:2	0/1:109,18:32:127:0.142:2	0/1:82,7:33:89:0.079:2	0/1:83,10:32:93:0.108:2	0/1:97,7:31:104:0.067:2	./.	./.
chr9	136081362	rs149232831	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,20:31:69:0.290:2	0/1:37,16:30:53:0.302:2	./.	0/1:79,17:30:96:0.177:2	0/1:83,8:30:91:0.088:2	0/1:99,15:31:114:0.132:2	0/1:75,6:32:81:0.074:2	0/1:77,8:31:85:0.094:2	0/1:91,6:30:98:0.062:2	./.	./.
chr9	136083528	rs3192921	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,5:32:26:0.192:2	./.	0/1:22,4:32:26:0.154:2	0/1:24,5:31:29:0.172:2	0/1:23,5:27:28:0.179:2	./.	./.
chr9	136083580	rs2073870	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,24:28:43:0.558:2	0/1:9,19:26:28:0.679:2	0/1:0,8:31:8:1.00:2	0/1:0,57:29:57:1.00:2	0/1:0,49:28:49:1.00:2	0/1:0,70:29:70:1.00:2	0/1:0,83:28:83:1.00:2	0/1:0,82:28:82:1.00:2	0/1:0,61:30:61:1.00:2	0/1:0,50:29:50:1.00:2	0/1:22,21:28:43:0.488:2
chr9	136084554	rs140009577	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,61:31:196:0.311:2	./.	./.	./.	./.	./.
chr9	136100565	rs45612939	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,27:32:55:0.491:2	./.	./.	./.	./.	./.
chr9	136101557	rs4379511	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,34:30:82:0.415:2	0/1:26,31:29:57:0.544:2	0/1:0,23:29:23:1.00:2	0/1:2,121:29:123:0.984:2	0/1:0,182:29:182:1.00:2	0/1:0,153:29:153:1.00:2	0/1:1,187:29:188:0.995:2	0/1:1,155:29:156:0.994:2	0/1:0,106:30:106:1.00:2	0/1:0,95:30:95:1.00:2	0/1:56,50:29:106:0.472:2
chr9	136102199	rs4507838	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,32:28:66:0.485:2	0/1:24,10:29:34:0.294:2	0/1:0,5:29:5:1.00:2	0/1:0,69:28:69:1.00:2	0/1:1,54:28:55:0.982:2	0/1:0,55:28:56:1.00:2	0/1:0,54:29:54:1.00:2	0/1:2,58:27:60:0.967:2	0/1:0,79:28:80:1.00:2	0/1:0,48:27:49:1.00:2	0/1:46,41:28:87:0.471:2
chr9	136102219	rs112037471	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	136131188	rs8176749	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:29:12:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	136131289	rs8176748	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:20,26:29:46:0.565:2	0/1:18,10:29:28:0.357:2	./.	./.	0/1:13,24:29:37:0.649:2	./.	0/1:3,28:30:31:0.903:2	0/1:31,19:31:50:0.380:2	./.	0/1:0,44:29:44:1.00:2	./.
chr9	136131316	rs41302905	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,29:31:53:0.547:2	./.	./.	./.	./.	./.
chr9	136131347	rs8176745	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:19,13:31:32:0.406:2	0/1:15,8:31:23:0.348:2	./.	./.	0/1:11,14:31:25:0.560:2	./.	0/1:3,24:30:27:0.889:2	0/1:25,14:29:39:0.359:2	./.	0/1:0,19:30:19:1.00:2	./.
chr9	136131415	rs8176743	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:33:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	136131429	rs56116432	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,23:30:40:0.575:2	./.	./.	./.	./.	./.
chr9	136131437	rs8176742	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:8,9:29:17:0.529:2	0/1:4,8:30:12:0.667:2	./.	./.	0/1:19,13:29:32:0.406:2	./.	0/1:0,31:29:31:1.00:2	0/1:18,11:30:29:0.379:2	./.	0/1:0,26:31:26:1.00:2	./.
chr9	136131461	rs8176741	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:31:9:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	136131472	rs8176740	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:12,11:31:23:0.478:2	0/1:2,9:31:11:0.818:2	./.	./.	0/1:24,19:30:43:0.442:2	./.	0/1:0,40:30:40:1.00:2	0/1:24,16:30:40:0.400:2	./.	0/1:0,33:31:33:1.00:2	./.
chr9	136131592	rs7853989	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,8:31:20:0.421:2	./.	./.	./.	./.	./.
chr9	136131651	rs1053878	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,12:31:19:0.632:2	./.	./.	./.	./.	./.	./.	./.
chr9	136132873	rs8176720	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:58,43:28:101:0.426:2	0/1:31,29:27:60:0.483:2	0/1:8,10:29:18:0.556:2	./.	0/1:83,65:28:148:0.439:2	0/1:73,74:29:147:0.503:2	0/1:1,151:29:153:0.993:2	0/1:95,63:28:158:0.399:2	./.	0/1:0,104:28:104:1.00:2	./.
chr9	136133506	rs512770	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,14:34:26:0.538:2	0/1:10,4:33:14:0.286:2	0/1:0,9:32:9:1.00:2	0/1:0,44:32:44:1.00:2	0/1:34,18:32:52:0.346:2	0/1:21,12:32:33:0.364:2	./.	0/1:23,13:33:36:0.361:2	0/1:0,39:33:39:1.00:2	./.	0/1:0,30:32:30:1.00:2
chr9	136133531	rs4962040	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:15,17:30:32:0.531:2	0/1:11,8:30:19:0.421:2	0/1:2,6:30:8:0.750:2	./.	0/1:37,19:29:56:0.339:2	0/1:21,13:29:34:0.382:2	./.	./.	0/1:17,18:30:35:0.514:2	./.	0/1:5,18:31:23:0.783:2
chr9	136135195	rs549331	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,30:30:84:0.361:2	0/1:43,12:31:55:0.218:2	0/1:2,11:33:14:0.846:2	0/1:0,90:33:90:1.00:2	0/1:140,48:33:188:0.255:2	0/1:0,108:32:108:1.00:2	./.	0/1:126,67:33:193:0.347:2	0/1:0,92:33:92:1.00:2	./.	0/1:0,99:32:99:1.00:2
chr9	136135237	rs549443	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,44:29:109:0.404:2	0/1:54,23:28:77:0.299:2	0/1:2,9:30:11:0.818:2	0/1:0,101:29:101:1.00:2	0/1:133,45:29:178:0.253:2	0/1:0,124:30:124:1.00:2	./.	0/1:118,57:30:175:0.326:2	0/1:1,105:31:106:0.991:2	./.	0/1:0,103:29:103:1.00:2
chr9	136135238	rs549446	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,44:30:109:0.404:2	0/1:52,23:29:75:0.307:2	0/1:2,9:29:11:0.818:2	0/1:0,101:29:101:1.00:2	0/1:133,45:30:179:0.253:2	0/1:0,124:30:124:1.00:2	./.	0/1:118,57:30:175:0.326:2	0/1:1,105:30:106:0.991:2	./.	0/1:0,103:29:103:1.00:2
chr9	136136770	rs688976	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,13:30:24:0.542:2	0/1:7,13:30:20:0.650:2	0/1:0,12:32:12:1.00:2	0/1:0,56:32:56:1.00:2	0/1:21,21:32:42:0.500:2	0/1:0,40:31:40:1.00:2	./.	0/1:44,27:32:71:0.380:2	0/1:1,62:32:63:0.984:2	./.	0/1:0,54:32:54:1.00:2
chr9	136136773	rs8176696	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,11:33:25:0.440:2	0/1:12,8:32:20:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	136137547	rs55876802	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,4:32:138:0.029:2	./.	0/1:76,47:31:123:0.382:2	./.	./.	./.	./.	./.
chr9	136199466	rs886089	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,14:32:15:0.933:2	0/1:0,5:32:5:1.00:2	./.	./.	./.	./.	./.	./.	0/1:10,6:31:16:0.375:2	./.	0/1:6,7:32:13:0.538:2
chr9	136199503	rs886090	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,18:31:19:0.947:2	0/1:0,6:32:6:1.00:2	./.	./.	./.	./.	./.	./.	0/1:16,5:32:21:0.238:2	./.	0/1:9,6:32:15:0.400:2
chr9	136211185	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,43:32:97:0.443:2	./.	./.	./.	./.	./.	./.
chr9	136215098	rs146152905	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,88:32:188:0.468:2	./.	./.
chr9	136215142	rs77451162	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,60:33:119:0.504:2	./.	./.	./.
chr9	136215642	rs7019683	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,46:31:119:0.387:2	0/1:49,46:32:96:0.484:2	./.	0/1:90,56:32:148:0.384:2	./.	0/1:47,39:31:86:0.453:2	./.
chr9	136216882	rs7700	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,18:31:48:0.375:2	0/1:27,26:31:53:0.491:2	./.	./.	./.	0/1:19,24:31:43:0.558:2	./.
chr9	136218190	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,7:30:28:0.250:2
chr9	136221752	rs116779216	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,68:32:139:0.489:2	./.	./.	./.
chr9	136227260	rs12763	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,25:31:43:0.581:2	0/1:0,26:31:26:1.00:2	0/1:2,40:33:42:0.952:2	0/1:0,25:32:25:1.00:2	0/1:0,43:32:43:1.00:2	0/1:16,17:33:33:0.515:2	0/1:0,30:32:30:1.00:2	0/1:19,17:30:36:0.472:2
chr9	136228006	rs34939258	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,7:30:14:0.500:2	0/1:16,9:30:25:0.360:2	./.	./.	./.	0/1:10,16:31:26:0.615:2	./.
chr9	136245903	rs7852803	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,13:32:36:0.361:2	0/1:29,8:32:37:0.216:2	./.	0/1:32,32:32:65:0.500:2	./.	0/1:19,17:32:36:0.472:2	./.
chr9	136255389	rs113247190	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	136262354	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:32:120:0.034:2	./.	./.
chr9	136268038	rs3124748	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,51:31:129:0.395:2	0/1:107,54:31:161:0.335:2	0/1:52,63:31:115:0.548:2	0/1:81,49:32:130:0.377:2	0/1:69,50:31:119:0.420:2	0/1:64,57:32:121:0.471:2	0/1:43,54:31:98:0.557:2	0/1:65,41:32:106:0.387:2
chr9	136268084	rs3124747	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:31:68:1.00:2	0/1:0,31:31:31:1.00:2	0/1:7,9:29:16:0.563:2	0/1:1,109:31:110:0.991:2	0/1:53,78:29:131:0.595:2	0/1:60,37:31:97:0.381:2	./.	./.	0/1:53,63:32:116:0.543:2	0/1:58,40:30:98:0.408:2	0/1:38,44:31:82:0.537:2
chr9	136268897	rs36079470	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,18:33:41:0.439:2	./.	./.	./.
chr9	136268912	rs28510482	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,20:31:51:0.392:2	0/1:18,15:30:34:0.455:2	0/1:19,14:30:33:0.424:2	0/1:20,16:30:36:0.444:2	./.	0/1:1,32:30:33:0.970:2	0/1:13,18:32:31:0.581:2
chr9	136268952	rs33919837	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,16:32:35:0.457:2	0/1:15,12:29:27:0.444:2	./.	./.	./.	./.	./.
chr9	136269119	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:31:136:0.029:2	./.	./.	./.	./.
chr9	136269143	rs17150554	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,53:32:123:0.431:2	0/1:49,56:32:105:0.533:2	./.	./.	./.	./.	./.
chr9	136270538	rs41302673	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:31:10:0.600:2	./.	./.	./.	./.	./.	./.	./.
chr9	136277480	rs2285486	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,5:32:7:0.714:2	0/1:67,58:29:125:0.464:2	0/1:0,129:28:129:1.00:2	0/1:0,117:29:117:1.00:2	0/1:2,106:29:108:0.981:2	0/1:0,148:29:149:1.00:2	0/1:59,50:31:109:0.459:2	0/1:0,93:29:93:1.00:2	0/1:75,50:28:125:0.400:2
chr9	136277482	rs2285487	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,69:32:132:0.523:2	0/1:72,46:32:118:0.390:2	./.	./.	./.	./.	./.
chr9	136279935	rs6597630	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,52:31:129:0.403:2	0/1:73,82:31:155:0.529:2	./.	./.	./.	./.	./.
chr9	136287582	rs34024143	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,16:31:33:0.485:2	0/1:20,20:32:41:0.500:2	./.	./.	./.	./.	./.
chr9	136290672	rs28571612	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,28:32:57:0.491:2	./.	./.	./.	./.	./.	./.
chr9	136291063	rs3118667	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,54:32:54:1.00:2	0/1:0,89:32:89:1.00:2	0/1:37,29:32:66:0.439:2	0/1:0,61:32:61:1.00:2	0/1:2,59:32:61:0.967:2	0/1:27,20:33:47:0.426:2	0/1:0,48:32:48:1.00:2	0/1:21,19:32:40:0.475:2
chr9	136291361	rs34054981	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,34:29:76:0.453:2	0/1:29,37:28:66:0.561:2	./.	./.	./.	./.	./.
chr9	136301982	rs2301612	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,43:32:43:1.00:2	0/1:1,22:32:23:0.957:2	0/1:11,3:33:14:0.214:2	./.	0/1:38,35:31:73:0.479:2	0/1:0,55:31:55:1.00:2	./.	./.	0/1:40,23:32:63:0.365:2	./.	0/1:22,9:33:32:0.290:2
chr9	136302925	rs201457594	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,50:31:89:0.562:2
chr9	136304497	rs3124768	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:124,5:32:129:0.039:2	./.	0/1:13,10:30:23:0.435:2	0/1:1,128:30:130:0.992:2	0/1:57,53:29:110:0.482:2	./.	0/1:2,134:30:136:0.985:2	0/1:107,62:29:169:0.367:2	0/1:81,75:31:156:0.481:2	0/1:0,132:29:132:1.00:2	0/1:70,61:30:131:0.466:2
chr9	136305530	rs28647808	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,87:30:148:0.588:2	0/1:58,43:29:101:0.426:2	./.	./.	./.	./.	./.
chr9	136307626	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,8:31:86:0.093:2	./.	./.	./.	./.	./.	./.
chr9	136307746	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,4:30:37:0.108:2	./.
chr9	136307825	rs41314453	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,70:31:139:0.504:2	0/1:67,50:31:117:0.427:2	./.	./.	./.	./.	./.
chr9	136308542	rs3124767	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,12:31:12:1.00:2	0/1:0,2:33:2:1.00:2	./.	0/1:0,6:29:6:1.00:2	0/1:0,3:29:3:1.00:2	0/1:1,4:33:5:0.800:2	0/1:0,6:31:6:1.00:2	./.
chr9	136319600	rs34934621	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,31:32:71:0.437:2	0/1:40,39:32:79:0.494:2	./.	./.	./.	./.	./.
chr9	136324239	rs1055432	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:2,46:30:48:0.958:2	0/1:0,27:32:27:1.00:2	0/1:7,5:30:12:0.417:2	./.	./.	0/1:31,30:30:61:0.492:2	./.	./.	0/1:38,31:31:69:0.449:2	./.	0/1:26,25:31:51:0.490:2
chr9	136328657	rs3124765	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,53:30:54:0.981:2	0/1:0,35:29:35:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,101:30:101:1.00:2	0/1:77,80:29:157:0.510:2	0/1:0,95:29:95:1.00:2	0/1:0,140:29:140:1.00:2	./.	0/1:51,46:30:97:0.474:2	0/1:0,62:29:62:1.00:2	0/1:0,54:29:54:1.00:2
chr9	136338580	rs41297217	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.	./.	0/1:42,33:31:75:0.440:2	./.	./.	./.	./.	./.
chr9	136338598	rs41309954	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,37:30:76:0.487:2	./.	./.	./.	./.	./.
chr9	136339181	rs28584627	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,9:30:23:0.391:2	0/1:18,18:31:36:0.500:2	./.	./.	./.	./.	./.
chr9	136340200	rs2073935	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,11:30:11:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,3:33:3:1.00:2	0/1:0,25:33:25:1.00:2	0/1:11,3:29:14:0.214:2	0/1:0,27:32:27:1.00:2	0/1:0,6:33:6:1.00:2	./.	0/1:8,10:33:18:0.556:2	0/1:0,8:31:8:1.00:2	./.
chr9	136379890	rs17758315	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,18:29:37:0.500:2	0/1:11,11:29:22:0.500:2	0/1:2,12:31:14:0.857:2	0/1:0,51:30:51:1.00:2	0/1:19,32:30:51:0.627:2	0/1:18,11:31:29:0.379:2	0/1:0,33:30:33:1.00:2	0/1:0,41:29:41:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,31:31:31:1.00:2	./.
chr9	136404920	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,4:33:37:0.108:2	./.	./.	./.	./.	./.
chr9	136412170	rs2073874	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,46:29:46:1.00:2	0/1:0,17:31:17:1.00:2	./.	0/1:42,53:29:95:0.558:2	0/1:0,73:31:73:1.00:2	0/1:0,74:30:74:1.00:2	0/1:1,95:30:96:0.990:2	0/1:0,89:31:89:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,61:30:61:1.00:2	0/1:0,64:31:64:1.00:2
chr9	136412236	rs2073875	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,55:33:56:0.982:2	0/1:0,21:32:21:1.00:2	0/1:0,2:32:2:1.00:2	0/1:41,42:32:83:0.506:2	0/1:0,63:32:63:1.00:2	0/1:0,55:32:55:1.00:2	0/1:1,79:32:81:0.988:2	0/1:0,66:32:66:1.00:2	0/1:0,56:33:56:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,61:31:62:1.00:2
chr9	136412255	rs2073876	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,52:29:54:0.963:2	0/1:0,21:29:21:1.00:2	0/1:0,2:29:2:1.00:2	0/1:44,38:27:82:0.463:2	0/1:0,57:29:57:1.00:2	0/1:0,53:29:53:1.00:2	0/1:1,71:29:72:0.986:2	0/1:0,63:29:63:1.00:2	0/1:0,61:30:61:1.00:2	0/1:0,45:29:45:1.00:2	0/1:0,47:28:47:1.00:2
chr9	136412296	rs2073877	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,24:31:63:0.381:2	0/1:9,12:32:21:0.571:2	./.	0/1:39,24:31:63:0.381:2	0/1:0,44:30:44:1.00:2	./.	0/1:37,28:31:65:0.431:2	./.	./.	./.	0/1:23,18:31:41:0.439:2
chr9	136419581	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,6:29:11:0.545:2	./.	./.	./.	./.
chr9	136421044	rs144844522	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	0/1:3,4:32:7:0.571:2	./.	./.
chr9	136433542	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:33:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	136434598	rs146170989	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,16:30:34:0.471:2	0/1:15,13:32:28:0.464:2	./.	./.	0/1:2,107:30:109:0.982:2	0/1:0,64:31:64:1.00:2	0/1:1,79:30:80:0.988:2	0/1:2,86:30:88:0.977:2	0/1:0,41:32:41:1.00:2	./.	0/1:3,44:30:48:0.936:2
chr9	136435473	rs147931149	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	./.
chr9	136435557	rs368922820	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,11:29:18:0.611:2	./.	./.	./.	./.	./.
chr9	136438985	rs182725390	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:10,12:29:22:0.545:2	0/1:14,6:29:20:0.300:2	./.	./.	./.	./.	0/1:29,35:28:64:0.547:2	./.	./.	./.	./.
chr9	136501569	rs76856960	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,7:31:27:0.259:2	./.	./.	./.	./.	./.	./.	./.
chr9	136505114	rs1108580	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,33:32:33:1.00:2	0/1:0,14:31:14:1.00:2	./.	0/1:23,17:34:40:0.425:2	0/1:24,18:32:42:0.429:2	0/1:2,26:31:28:0.929:2	0/1:21,23:31:44:0.523:2	0/1:30,15:33:45:0.333:2	0/1:12,15:34:27:0.556:2	0/1:10,20:32:30:0.667:2	0/1:30,11:33:41:0.268:2
chr9	136518097	rs77905	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,15:30:16:0.938:2	0/1:102,86:29:188:0.457:2	0/1:100,92:30:192:0.479:2	./.	0/1:76,111:30:187:0.594:2	0/1:1,182:29:183:0.995:2	0/1:111,67:30:178:0.376:2	0/1:74,90:30:164:0.549:2	./.
chr9	136522274	rs6271	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,47:32:101:0.465:2	0/1:49,13:32:62:0.210:2	./.	./.	./.	0/1:95,84:32:180:0.469:2	./.	./.	0/1:66,85:33:151:0.563:2	./.	0/1:42,60:33:102:0.588:2
chr9	136536679	rs129932	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,8:32:19:0.421:2	0/1:69,75:31:144:0.521:2	0/1:84,104:31:188:0.553:2	./.	0/1:53,80:31:133:0.602:2	0/1:0,158:31:158:1.00:2	./.	0/1:61,35:32:96:0.365:2	./.
chr9	136536793	rs2519123	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,51:30:97:0.526:2	0/1:27,21:29:48:0.438:2	0/1:0,18:30:18:1.00:2	0/1:71,48:30:120:0.403:2	0/1:92,42:29:134:0.313:2	./.	0/1:49,33:30:82:0.402:2	0/1:0,136:30:136:1.00:2	./.	0/1:58,26:30:85:0.310:2	./.
chr9	136555629	rs886016	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,38:29:38:1.00:2	0/1:17,8:29:25:0.320:2	./.	0/1:10,11:28:21:0.524:2	0/1:0,21:28:21:1.00:2	0/1:9,11:29:20:0.550:2	0/1:10,10:28:20:0.500:2	./.
chr9	136559460	rs2073817	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,40:31:77:0.519:2	0/1:27,17:32:44:0.386:2	0/1:3,5:29:8:0.625:2	0/1:3,105:31:108:0.972:2	0/1:54,52:30:106:0.491:2	./.	0/1:26,35:30:61:0.574:2	0/1:2,89:30:91:0.978:2	0/1:34,44:31:78:0.564:2	0/1:33,41:32:74:0.554:2	./.
chr9	136561367	rs2502740	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,11:32:20:0.579:2	0/1:3,4:31:7:0.571:2	./.	./.	0/1:17,4:33:21:0.190:2	0/1:0,25:32:25:1.00:2	0/1:12,16:32:28:0.571:2	./.	0/1:10,11:32:21:0.524:2	./.	0/1:6,10:32:16:0.625:2
chr9	136568066	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:30:69:0.058:2	./.	./.	./.
chr9	136573412	rs2073815	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,31:32:32:0.969:2	0/1:0,27:32:27:1.00:2	./.	./.	0/1:29,27:31:56:0.482:2	0/1:26,31:31:57:0.544:2	./.	./.	./.	0/1:32,15:32:47:0.319:2	0/1:21,28:31:49:0.571:2
chr9	136582482	rs35218200	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,34:30:93:0.366:2	./.	./.	0/1:29,19:31:48:0.396:2
chr9	136583821	rs182442608	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,61:29:128:0.477:2	./.	./.	./.	./.	./.	./.
chr9	136599146	rs573904	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:30,19:32:49:0.388:2	0/1:13,17:32:30:0.567:2	0/1:4,8:29:12:0.667:2	./.	./.	0/1:32,35:31:67:0.522:2	./.	./.	./.	0/1:20,33:30:54:0.623:2	0/1:17,25:31:42:0.595:2
chr9	136635612	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:112,4:32:116:0.034:2	./.	./.	./.	./.	./.	./.
chr9	136640122	rs7875953	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:33:151:0.026:2	./.	./.	./.
chr9	136643908	rs56233098	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,23:29:39:0.590:2	./.	./.
chr9	136643994	rs602990	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:17,11:28:28:0.393:2	0/1:9,14:29:23:0.609:2	./.	0/1:20,27:28:47:0.574:2	./.	0/1:22,26:27:48:0.542:2	./.	0/1:30,32:29:62:0.516:2	0/1:0,42:29:42:1.00:2	0/1:0,20:30:20:1.00:2	0/1:13,8:28:21:0.381:2
chr9	136645079	rs540626	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,26:32:51:0.510:2	0/1:15,7:32:22:0.318:2	0/1:5,3:32:8:0.375:2	0/1:34,31:32:65:0.477:2	./.	0/1:31,27:33:58:0.466:2	./.	0/1:39,24:32:63:0.381:2	0/1:30,34:33:64:0.531:2	0/1:0,40:32:40:1.00:2	0/1:19,19:32:38:0.500:2
chr9	136653551	rs56296048	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:122,58:31:180:0.322:2	./.	./.	./.	./.	0/1:102,60:32:162:0.370:2	./.
chr9	136662928	rs7865299	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,52:34:104:0.500:2	./.	0/1:32,37:33:69:0.536:2
chr9	136675302	rs41302915	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,8:31:22:0.364:2	./.	./.	0/1:12,9:33:21:0.429:2	./.	0/1:11,16:32:27:0.593:2	./.
chr9	136857287	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,3:33:48:0.063:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	136907005	rs467387	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:31,38:32:69:0.551:2	0/1:26,28:32:54:0.519:2	./.	./.	./.	./.	0/1:20,38:31:58:0.655:2	./.	./.	0/1:26,30:32:56:0.536:2	./.
chr9	136913355	rs464826	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:37,21:33:58:0.362:2	0/1:28,12:32:40:0.300:2	0/1:9,7:32:16:0.438:2	./.	0/1:86,64:31:150:0.427:2	./.	0/1:68,63:32:131:0.481:2	0/1:0,125:32:125:1.00:2	0/1:54,47:33:101:0.465:2	0/1:34,39:32:73:0.534:2	0/1:37,34:31:71:0.479:2
chr9	136915508	rs2301576	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,9:29:21:0.429:2	./.	./.
chr9	137004991	rs28657441	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,24:31:39:0.615:2	./.	./.	./.	./.
chr9	137005023	rs11556390	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,26:31:26:1.00:2	0/1:0,13:33:13:1.00:2	./.	0/1:0,69:30:69:1.00:2	0/1:35,18:29:53:0.340:2	./.	./.	0/1:35,35:32:70:0.500:2	./.	./.	./.
chr9	137007451	rs28562287	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,23:32:57:0.404:2	./.	./.	./.	./.
chr9	137007505	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:30:90:0.044:2	./.	./.	./.	./.
chr9	137007520	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:31:107:0.037:2	./.	./.	./.
chr9	137007525	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,3:32:18:0.167:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	137007531	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,3:31:18:0.167:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	137017126	rs34523253	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,60:30:124:0.484:2	./.	./.	./.	./.
chr9	137017170	rs138223746	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,39:31:99:0.394:2	./.	0/1:50,32:31:83:0.390:2	./.
chr9	137020431	rs28620999	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,142:28:144:0.986:2	./.	0/1:50,35:29:85:0.412:2	./.	0/1:45,35:27:81:0.438:2
chr9	137023024	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:35:122:0.033:2	./.
chr9	137023059	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,5:31:133:0.038:2	./.
chr9	137023067	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,5:30:130:0.038:2	./.
chr9	137541413	rs12554943	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,11:28:35:0.314:2	./.	./.	./.	./.	0/1:27,31:29:58:0.534:2	./.	./.
chr9	137619195	rs3124299	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,40:31:41:0.976:2	0/1:0,40:32:40:1.00:2	0/1:9,7:31:16:0.438:2	0/1:29,36:32:65:0.554:2	0/1:32,37:32:69:0.536:2	0/1:39,45:32:84:0.536:2	./.	0/1:50,39:32:89:0.438:2	./.	0/1:28,20:33:48:0.417:2	0/1:40,29:33:69:0.420:2
chr9	137630587	rs3128612	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,11:33:29:0.379:2	0/1:16,11:32:27:0.407:2	./.	0/1:23,9:30:32:0.281:2	0/1:21,3:31:24:0.125:2	0/1:25,15:32:40:0.375:2	0/1:0,20:34:20:1.00:2	0/1:33,9:32:42:0.214:2	0/1:0,22:33:22:1.00:2	0/1:13,8:32:21:0.381:2	0/1:30,30:33:60:0.500:2
chr9	137642654	rs61735045	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,45:32:95:0.474:2	./.	./.	./.	./.	./.	./.	./.
chr9	137655607	rs41298367	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,28:32:74:0.384:2
chr9	137672012	rs3124932	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,6:29:23:0.261:2	0/1:4,7:32:11:0.636:2	./.	0/1:0,24:30:24:1.00:2	0/1:15,9:30:24:0.375:2	0/1:31,20:29:51:0.392:2	0/1:24,10:30:34:0.294:2	0/1:25,28:29:53:0.528:2	./.	0/1:27,10:30:37:0.270:2	0/1:15,17:30:32:0.531:2
chr9	137674488	rs41310213	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,39:32:63:0.619:2	0/1:14,24:31:38:0.632:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	137676938	rs139788610	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,14:30:24:0.583:2	./.	./.	./.	./.	./.	./.	./.
chr9	137686906	rs4072883	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,6:31:16:0.375:2	0/1:5,6:31:11:0.545:2	0/1:2,3:30:5:0.600:2	0/1:13,9:31:22:0.409:2	0/1:0,19:31:19:1.00:2	0/1:13,11:30:24:0.458:2	0/1:0,20:31:20:1.00:2	0/1:13,13:29:26:0.500:2	0/1:0,17:30:17:1.00:2	./.	0/1:11,11:31:22:0.500:2
chr9	137686951	rs41310207	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,29:31:56:0.518:2	./.	./.	./.	./.	./.
chr9	137686987	rs79481146	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,40:32:82:0.488:2	./.	./.	./.	./.	./.
chr9	137687183	rs76855839	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,15:31:34:0.441:2	./.	./.	./.	./.	./.	./.	./.
chr9	137688741	rs78511105	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,9:26:24:0.375:2	./.	./.	./.	./.	./.	./.	./.
chr9	137690318	rs4240707	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,51:32:97:0.526:2	0/1:0,65:31:65:1.00:2	./.	0/1:1,87:32:88:0.989:2	0/1:62,34:31:96:0.354:2	0/1:1,70:32:71:0.986:2	./.	0/1:40,31:31:71:0.437:2
chr9	137701080	rs149616140	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,10:30:19:0.526:2	./.	./.	./.	./.	./.	./.	./.
chr9	137707834	rs3827848	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:33:8:0.500:2	./.	./.	./.	0/1:61,65:33:126:0.516:2	./.	0/1:0,148:33:148:1.00:2	./.	0/1:62,56:32:118:0.475:2
chr9	137708884	rs61739195	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,46:31:80:0.575:2	./.	./.	./.	./.	./.
chr9	137708934	rs10858282	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,24:30:67:0.358:2	0/1:2,33:31:35:0.943:2	./.	0/1:40,17:32:57:0.298:2	./.	0/1:0,38:32:38:1.00:2	./.	0/1:37,24:32:61:0.393:2
chr9	137709683	rs77176843	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,48:31:92:0.522:2
chr9	137710837	rs11792181	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,15:31:36:0.417:2	./.	./.	./.	./.	./.	./.
chr9	137711997	rs2228560	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,52:29:79:0.658:2	0/1:27,26:28:53:0.491:2	0/1:0,9:29:9:1.00:2	0/1:52,44:29:96:0.458:2	0/1:50,45:28:95:0.474:2	0/1:58,59:30:117:0.504:2	0/1:0,124:28:124:1.00:2	0/1:63,41:29:104:0.394:2	0/1:0,79:30:79:1.00:2	./.	0/1:34,43:29:77:0.558:2
chr9	137717735	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,13:31:42:0.310:2	./.	./.	./.
chr9	137721880	rs193275092	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,4:33:102:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr9	137726870	rs61729481	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,41:30:80:0.513:2	./.	./.	./.
chr9	137772768	rs141131781	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,30:31:69:0.435:2
chr9	137775139	rs3128624	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:40,33:32:73:0.452:2	0/1:24,16:32:40:0.400:2	./.	./.	0/1:37,25:29:62:0.403:2	0/1:2,94:31:96:0.979:2	./.	./.	./.	0/1:28,43:33:71:0.606:2	./.
chr9	137775155	rs4520243	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:33,37:27:70:0.529:2	0/1:23,17:29:40:0.425:2	./.	./.	0/1:37,28:27:65:0.431:2	0/1:1,83:28:84:0.988:2	./.	./.	./.	0/1:31,44:29:75:0.587:2	./.
chr9	137775212	rs7037264	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,15:30:57:0.263:2	0/1:29,26:29:55:0.473:2	./.	0/1:0,49:30:49:1.00:2	0/1:35,30:30:65:0.462:2	0/1:37,36:32:73:0.493:2	0/1:33,20:31:54:0.377:2	0/1:0,43:30:43:1.00:2
chr9	137779026	rs17549193	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,70:31:135:0.519:2	0/1:68,64:31:132:0.485:2	./.	./.	0/1:99,58:32:157:0.369:2	0/1:93,46:33:139:0.331:2	0/1:60,49:33:109:0.450:2	./.
chr9	137779083	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:32:180:0.022:2	./.	./.
chr9	137779091	rs7851696	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,97:31:97:1.00:2	./.	./.	./.	0/1:2,124:31:126:0.984:2
chr9	137801800	rs1071583	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,40:32:91:0.444:2	0/1:39,22:33:61:0.361:2	0/1:0,19:33:19:1.00:2	0/1:0,153:33:153:1.00:2	0/1:2,118:32:120:0.983:2	0/1:0,129:33:129:1.00:2	./.	0/1:0,181:33:181:1.00:2	0/1:0,152:34:153:1.00:2	0/1:57,47:33:104:0.452:2	0/1:69,96:32:165:0.582:2
chr9	137804360	rs2274845	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,23:28:44:0.523:2	0/1:10,11:29:21:0.524:2	0/1:0,6:27:6:1.00:2	0/1:0,44:27:44:1.00:2	0/1:0,42:26:42:1.00:2	0/1:0,52:28:53:1.00:2	./.	0/1:2,57:29:59:0.966:2	0/1:0,43:27:43:1.00:2	0/1:30,25:29:56:0.455:2	0/1:21,23:26:44:0.523:2
chr9	137805415	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:30:105:0.038:2	./.	./.	./.
chr9	137808283	rs10441778	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,30:29:56:0.536:2	./.	./.	./.	./.	./.
chr9	137809685	rs10858293	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,14:30:33:0.424:2	0/1:23,31:30:54:0.574:2	./.	./.	0/1:37,34:29:71:0.479:2	0/1:23,27:31:50:0.540:2	0/1:21,18:31:39:0.462:2	0/1:18,15:29:33:0.455:2
chr9	137968951	rs56222438	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,68:32:151:0.453:2	0/1:82,81:31:164:0.497:2	./.	./.	./.	0/1:87,79:32:166:0.476:2	0/1:65,60:32:125:0.480:2	./.
chr9	137979926	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:147,4:31:151:0.026:2	./.	./.	./.	./.	./.	./.
chr9	137979961	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,20:30:36:0.556:2	./.	./.	./.	./.	./.	./.
chr9	137982127	rs500461	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,14:32:30:0.467:2	0/1:9,12:31:21:0.571:2	0/1:3,3:32:6:0.500:2	0/1:0,47:33:47:1.00:2	0/1:4,81:32:85:0.953:2	0/1:2,70:32:72:0.972:2	0/1:0,111:32:111:1.00:2	0/1:0,107:32:107:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,56:32:56:1.00:2
chr9	137998702	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,4:30:19:0.211:2	./.	./.
chr9	138011508	rs115071335	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,82:31:189:0.434:2	./.	./.	./.
chr9	138236031	rs914398	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,7:29:18:0.389:2	0/1:5,6:28:11:0.545:2	./.	./.	0/1:0,8:27:8:1.00:2	0/1:11,9:29:20:0.450:2	0/1:0,8:29:8:1.00:2	./.	0/1:9,10:30:19:0.526:2	./.	./.
chr9	138236212	rs914397	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:33:66:1.00:2	0/1:1,44:33:45:0.978:2	0/1:0,9:33:9:1.00:2	0/1:46,40:32:86:0.465:2	0/1:0,33:32:33:1.00:2	0/1:1,58:32:59:0.983:2	0/1:0,24:32:24:1.00:2	0/1:1,41:33:42:0.976:2	0/1:46,23:33:69:0.333:2	0/1:0,55:31:55:1.00:2	0/1:60,33:33:93:0.355:2
chr9	138376649	rs3748192	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,10:29:20:0.500:2	0/1:0,42:32:42:1.00:2	./.	0/1:22,11:32:33:0.333:2	0/1:18,17:32:35:0.486:2	0/1:15,15:33:30:0.500:2	./.	./.
chr9	138376972	rs3928777	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,4:26:25:0.160:2	0/1:1,16:29:17:0.941:2	./.	0/1:11,9:27:20:0.450:2	0/1:13,6:30:19:0.316:2	0/1:11,11:31:22:0.500:2	./.	./.
chr9	138377433	rs3827827	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,48:29:91:0.527:2	0/1:1,111:30:112:0.991:2	./.	./.	./.	./.	./.	./.
chr9	138377498	rs34151777	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,13:33:30:0.433:2	./.	./.
chr9	138377657	rs1808998	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,10:31:17:0.588:2	0/1:1,16:31:17:0.941:2	./.	0/1:14,11:29:25:0.440:2	0/1:9,10:28:19:0.526:2	0/1:9,8:30:17:0.471:2	./.	./.
chr9	138377719	rs146855291	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,20:32:44:0.455:2	./.	./.	./.	./.	./.
chr9	138377738	rs61729479	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,36:33:63:0.571:2	0/1:41,43:32:84:0.512:2	0/1:29,25:33:54:0.463:2	./.	./.
chr9	138377853	rs2004074	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,22:33:37:0.595:2	0/1:2,48:32:50:0.960:2	./.	0/1:24,23:31:47:0.489:2	0/1:40,37:32:77:0.481:2	0/1:22,35:33:57:0.614:2	./.	./.
chr9	138378856	rs2078266	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:29:49:1.00:2	0/1:0,34:29:34:1.00:2	0/1:4,5:28:9:0.556:2	0/1:0,66:29:66:1.00:2	0/1:0,93:28:93:1.00:2	0/1:0,91:30:91:1.00:2	0/1:1,88:29:89:0.989:2	0/1:66,50:29:117:0.431:2	0/1:0,62:31:62:1.00:2	0/1:27,21:30:48:0.438:2	0/1:0,58:29:58:1.00:2
chr9	138379002	rs1975518	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,5:30:5:1.00:2	0/1:0,4:28:4:1.00:2	./.	0/1:0,9:31:9:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,7:32:7:1.00:2
chr9	138379059	rs3748198	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,12:30:22:0.545:2	0/1:10,18:30:28:0.643:2	0/1:5,8:31:13:0.615:2	./.	./.
chr9	138380232	rs41299044	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,31:29:48:0.646:2	0/1:33,34:29:67:0.507:2	0/1:46,21:29:67:0.313:2	./.	./.
chr9	138380379	rs111701898	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,66:30:132:0.500:2	0/1:80,80:30:160:0.500:2	0/1:66,63:31:129:0.488:2	./.	./.
chr9	138391299	rs7037251	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,64:29:64:1.00:2	0/1:40,31:30:71:0.437:2	./.	0/1:57,49:30:106:0.462:2	./.	0/1:32,32:31:64:0.500:2	./.
chr9	138395484	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:33:156:0.026:2	./.	./.	./.
chr9	138395969	rs3748199	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,8:30:17:0.471:2	./.	./.	0/1:8,9:30:17:0.529:2	./.	./.	./.	./.
chr9	138413373	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,5:32:93:0.054:2	./.	./.	./.	./.
chr9	138413938	rs113368614	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,19:32:191:0.101:2	./.	./.	./.	./.	./.
chr9	138415730	rs117161567	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,57:32:131:0.435:2	./.	./.	./.	./.
chr9	138415731	rs117638349	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,57:30:130:0.438:2	./.	./.	./.	./.
chr9	138415740	rs55884352	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,90:32:187:0.481:2	./.	./.	./.	./.	./.	./.
chr9	138416755	rs148215832	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,16:32:34:0.471:2	./.	./.	./.	./.	./.	./.	./.
chr9	138438059	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,20:31:188:0.106:2	./.	./.	./.	./.	./.
chr9	138439090	rs111808171	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,15:30:27:0.556:2	./.	./.	./.	./.	./.	./.	./.
chr9	138439792	rs72766542	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,21:30:41:0.512:2	0/1:21,12:30:33:0.364:2	./.
chr9	138439806	rs72766543	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,13:31:36:0.361:2	0/1:12,8:31:20:0.400:2	./.	./.	0/1:16,14:31:30:0.467:2	0/1:16,16:29:32:0.500:2	0/1:10,11:31:21:0.524:2	0/1:16,23:31:39:0.590:2	0/1:20,15:31:36:0.429:2	./.	./.
chr9	138439809	rs72766544	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,13:30:36:0.361:2	0/1:11,8:32:19:0.421:2	./.	0/1:15,11:32:26:0.423:2	0/1:16,14:33:30:0.467:2	0/1:16,16:32:32:0.500:2	0/1:9,11:31:20:0.550:2	0/1:15,23:31:38:0.605:2	0/1:20,15:33:35:0.429:2	./.	./.
chr9	138440525	rs2590500	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,7:29:10:0.700:2	0/1:25,33:28:58:0.569:2	./.	./.	0/1:57,22:29:79:0.278:2	0/1:36,41:29:77:0.532:2	./.	0/1:29,21:29:50:0.420:2	0/1:0,50:28:50:1.00:2
chr9	138440527	rs2590501	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,7:30:10:0.700:2	0/1:25,33:30:58:0.569:2	./.	./.	0/1:55,22:30:77:0.286:2	0/1:37,41:29:78:0.526:2	./.	0/1:31,21:30:52:0.404:2	0/1:0,49:30:49:1.00:2
chr9	138440554	rs55695858	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,19:31:44:0.432:2	0/1:16,20:33:36:0.556:2	./.	0/1:40,19:33:59:0.322:2	0/1:36,11:33:47:0.234:2	0/1:38,30:32:68:0.441:2	0/1:20,28:32:48:0.583:2	0/1:43,24:33:67:0.358:2	0/1:31,29:34:60:0.483:2	./.	./.
chr9	138440562	rs3178137	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,18:30:42:0.429:2	0/1:20,18:32:38:0.474:2	./.	0/1:38,20:31:58:0.345:2	0/1:28,10:32:38:0.263:2	0/1:40,26:31:66:0.394:2	0/1:20,16:30:36:0.444:2	0/1:45,19:31:64:0.297:2	0/1:29,28:32:57:0.491:2	./.	./.
chr9	138440624	rs3827835	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,16:29:40:0.400:2	0/1:15,11:28:26:0.423:2	./.	./.	./.	0/1:29,15:28:44:0.341:2	./.	0/1:28,22:28:50:0.440:2	0/1:29,17:28:46:0.370:2	./.	./.
chr9	138440641	rs2853652	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:28:40:1.00:2	0/1:0,21:28:21:1.00:2	0/1:0,3:28:3:1.00:2	0/1:0,44:28:44:1.00:2	0/1:0,24:29:24:1.00:2	0/1:21,16:28:37:0.432:2	0/1:0,25:30:25:1.00:2	0/1:0,52:28:52:1.00:2	0/1:29,14:27:43:0.326:2	0/1:15,17:30:32:0.531:2	0/1:0,62:28:62:1.00:2
chr9	138441760	rs7859414	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,53:31:59:0.898:2	0/1:9,31:31:40:0.775:2	0/1:6,3:32:9:0.333:2	0/1:87,28:30:115:0.243:2	./.	0/1:93,30:29:123:0.244:2	./.	./.	0/1:54,12:31:66:0.182:2	./.	./.
chr9	138515958	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,4:31:133:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr9	138515991	rs12351198	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:3,94:33:97:0.969:2	0/1:0,69:32:69:1.00:2	./.	./.	./.	./.	0/1:41,29:32:70:0.414:2	./.	./.	./.	./.
chr9	138516119	rs17040344	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,20:32:37:0.541:2	./.	./.	0/1:35,24:32:59:0.407:2	0/1:11,25:32:36:0.694:2	./.
chr9	138516190	rs35762223	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,25:29:25:1.00:2	0/1:0,12:31:12:1.00:2	./.	./.	./.	0/1:18,17:28:35:0.486:2	0/1:15,8:28:23:0.348:2	./.	0/1:18,11:30:29:0.379:2	0/1:7,9:31:16:0.563:2	./.
chr9	138516452	rs199882249	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:107,6:35:113:0.053:2	./.	./.	./.	./.	./.	./.
chr9	138518010	rs1333240	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:30:74:1.00:2	0/1:0,62:29:62:1.00:2	0/1:0,10:28:10:1.00:2	0/1:0,115:29:115:1.00:2	0/1:0,111:29:111:1.00:2	0/1:0,104:29:104:1.00:2	0/1:1,80:30:81:0.988:2	0/1:0,102:29:102:1.00:2	0/1:0,109:30:109:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,103:29:103:1.00:2
chr9	138518015	rs202181415	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,14:18:63:0.222:2	./.	0/1:5,5:18:10:0.500:2	0/1:84,34:17:119:0.288:2	0/1:69,33:14:104:0.324:2	0/1:78,29:16:107:0.271:2	0/1:53,16:18:69:0.232:2	0/1:71,27:18:98:0.276:2	0/1:89,18:19:107:0.168:2	0/1:42,29:20:71:0.408:2	0/1:73,33:21:107:0.311:2
chr9	138523332	rs1333234	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:46,46:32:92:0.500:2	0/1:27,25:32:52:0.481:2	0/1:1,6:32:7:0.857:2	./.	0/1:0,57:31:57:1.00:2	0/1:0,80:31:80:1.00:2	0/1:41,21:31:62:0.339:2	0/1:30,26:32:56:0.464:2	0/1:0,73:32:73:1.00:2	0/1:30,34:32:65:0.531:2	0/1:0,114:32:114:1.00:2
chr9	138586198	rs572335	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,10:31:21:0.476:2	0/1:3,3:33:6:0.500:2	./.	0/1:6,4:30:10:0.400:2	0/1:0,12:33:12:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,14:32:14:1.00:2
chr9	138586940	rs55674357	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,7:31:24:0.292:2	./.	./.
chr9	138586966	rs3119932	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,10:29:12:0.833:2	./.	./.	0/1:4,6:26:10:0.600:2	0/1:0,2:30:2:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,7:25:7:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,21:29:21:1.00:2	0/1:0,7:27:7:1.00:2
chr9	138586967	rs3119933	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,10:27:12:0.833:2	./.	./.	0/1:5,6:28:11:0.545:2	0/1:0,2:29:2:1.00:2	0/1:1,19:30:20:0.950:2	0/1:0,6:31:6:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,9:32:9:1.00:2	0/1:1,19:29:21:0.950:2	0/1:0,7:29:7:1.00:2
chr9	138590928	rs471525	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,2:29:2:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,3:33:3:1.00:2	0/1:0,6:31:6:1.00:2	./.	0/1:0,4:32:4:1.00:2	./.
chr9	138591230	rs558113	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,17:32:72:0.236:2	0/1:28,19:33:47:0.404:2	0/1:0,15:32:15:1.00:2	0/1:3,79:32:82:0.963:2	0/1:0,73:32:73:1.00:2	0/1:2,71:32:73:0.973:2	0/1:1,99:32:100:0.990:2	0/1:0,106:32:106:1.00:2	0/1:43,49:33:92:0.533:2	0/1:0,45:32:45:1.00:2	0/1:0,78:33:78:1.00:2
chr9	138591246	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:30:121:0.033:2	./.	./.	./.	./.
chr9	138591266	rs559326	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,21:33:79:0.266:2	0/1:27,14:32:41:0.341:2	0/1:0,18:32:18:1.00:2	0/1:5,78:32:83:0.940:2	0/1:0,79:31:79:1.00:2	0/1:2,87:32:89:0.978:2	0/1:2,111:32:113:0.982:2	0/1:0,104:32:104:1.00:2	0/1:0,104:33:104:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,70:32:70:1.00:2
chr9	138594163	rs146292575	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,8:33:16:0.500:2	./.	./.
chr9	138606428	rs201051863	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2
chr9	138651622	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:177,4:33:181:0.022:2	./.	./.	./.	./.	./.	./.
chr9	138662273	rs17038714	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,56:32:103:0.544:2	./.	./.	0/1:70,43:32:113:0.381:2	./.	./.	./.	0/1:2,24:32:26:0.923:2
chr9	138664762	rs61744696	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:24:11:0.364:2	./.	./.	./.	./.	./.	./.	0/1:7,14:32:21:0.667:2	./.
chr9	138669261	rs914428	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,8:32:19:0.421:2	0/1:83,61:32:144:0.424:2	0/1:71,79:32:151:0.527:2	0/1:83,60:31:143:0.420:2	0/1:73,82:32:155:0.529:2	0/1:97,60:32:157:0.382:2	0/1:58,71:32:129:0.550:2	./.	0/1:50,53:32:103:0.515:2
chr9	138671304	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:29:72:0.056:2	./.
chr9	138709897	rs41309387	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,25:29:74:0.338:2	./.	./.	./.	./.	./.	./.
chr9	138713964	rs76232173	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,8:20:85:0.094:2	./.	0/1:77,5:23:82:0.061:2	./.	./.	./.	./.
chr9	138713975	rs35871460	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,41:30:72:0.569:2	./.	./.	./.	./.	./.	./.	./.
chr9	138742077	rs35981196	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,13:31:32:0.406:2	./.	./.	./.	./.	./.
chr9	138758297	rs74583827	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,25:29:47:0.532:2
chr9	138831516	rs201327657	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,5:29:188:0.027:2	./.
chr9	138831567	rs1044193	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,13:33:29:0.448:2	./.	0/1:101,72:32:173:0.416:2	./.	0/1:84,100:33:184:0.543:2	0/1:97,86:33:184:0.470:2	./.	0/1:3,156:32:159:0.981:2	./.
chr9	138837003	rs28757690	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,35:31:67:0.522:2	./.	./.	./.	./.	./.	./.	./.
chr9	138837786	rs375089690	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,3:37:67:0.045:2	./.	./.
chr9	138838140	rs7028495	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:29:58:1.00:2	0/1:0,35:29:35:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,117:30:117:1.00:2	0/1:0,77:29:77:1.00:2	0/1:0,84:29:84:1.00:2	0/1:0,133:29:133:1.00:2	0/1:0,95:29:95:1.00:2	0/1:0,68:29:68:1.00:2	0/1:0,80:30:80:1.00:2	0/1:1,89:29:90:0.989:2
chr9	138852904	rs74667710	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,12:28:28:0.429:2	./.	./.	./.	./.	./.	./.	./.
chr9	138903733	rs61742050	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,6:31:13:0.462:2	./.	./.	./.	./.	./.
chr9	138905076	rs7025705	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,28:31:35:0.800:2	./.	./.	./.	./.	./.	./.	./.
chr9	138905136	rs2280486	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,18:30:43:0.419:2	0/1:11,24:31:35:0.686:2	0/1:4,5:30:9:0.556:2	0/1:21,47:31:69:0.691:2	0/1:0,90:30:90:1.00:2	0/1:44,35:30:79:0.443:2	./.	0/1:49,52:30:101:0.515:2	0/1:0,89:31:90:1.00:2	0/1:18,33:31:51:0.647:2	./.
chr9	138908250	rs2275107	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:14,35:31:49:0.714:2	0/1:12,6:32:18:0.333:2	0/1:8,10:32:18:0.556:2	./.	0/1:31,48:30:79:0.608:2	./.	./.	0/1:30,36:31:66:0.545:2	0/1:28,34:31:62:0.548:2	./.	./.
chr9	139100805	rs9696116	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,20:30:38:0.526:2	0/1:27,9:29:36:0.250:2	0/1:5,3:29:8:0.375:2	0/1:27,23:27:50:0.460:2	0/1:21,32:28:53:0.604:2	0/1:37,31:29:69:0.456:2	./.	0/1:34,31:29:65:0.477:2	./.	0/1:1,52:30:53:0.981:2	0/1:28,15:29:43:0.349:2
chr9	139110654	rs12684650	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,11:31:23:0.500:2	0/1:7,8:31:15:0.533:2	./.	0/1:14,17:31:31:0.548:2	0/1:20,26:31:46:0.565:2	0/1:17,15:30:32:0.469:2	./.	0/1:24,21:32:45:0.467:2	./.	0/1:0,15:29:15:1.00:2	0/1:16,18:32:34:0.529:2
chr9	139110959	rs10123062	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,16:31:42:0.381:2	./.	./.	./.	./.	./.	./.	./.
chr9	139118673	rs12380852	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:32:13:0.308:2	./.	./.	0/1:84,82:33:166:0.494:2	./.	./.	0/1:76,63:32:139:0.453:2	./.	./.
chr9	139228962	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:30:81:0.049:2	./.
chr9	139229069	rs61739402	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,28:31:64:0.438:2	./.	./.	./.	./.	./.	./.	./.
chr9	139235415	rs60980157	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,9:31:12:0.750:2	0/1:3,3:32:6:0.500:2	0/1:1,2:31:3:0.667:2	0/1:14,15:29:29:0.517:2	./.	0/1:11,4:28:15:0.267:2	./.	./.	./.	0/1:2,3:30:5:0.600:2	0/1:9,9:29:18:0.500:2
chr9	139235526	rs59873903	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,30:28:70:0.429:2	./.	0/1:22,40:28:62:0.645:2	./.	0/1:31,32:29:63:0.508:2	0/1:29,20:30:49:0.408:2	./.	./.
chr9	139235559	rs113795708	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,40:30:87:0.460:2	./.	./.	./.	./.	./.	./.	./.
chr9	139235606	rs78403475	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,41:31:96:0.432:2	./.	./.	./.
chr9	139243143	rs76185667	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,5:30:15:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	139252495	rs3812547	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:37,34:27:72:0.479:2	0/1:41,26:29:67:0.388:2	0/1:2,6:29:8:0.750:2	./.	0/1:0,171:29:172:1.00:2	0/1:72,68:29:143:0.486:2	0/1:0,188:29:189:1.00:2	0/1:0,173:29:176:1.00:2	0/1:0,115:29:115:1.00:2	0/1:34,49:28:83:0.590:2	0/1:35,31:29:67:0.470:2
chr9	139256468	rs3812552	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,4:33:20:0.200:2	0/1:18,19:31:37:0.514:2	./.	./.	./.
chr9	139256541	rs3812554	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,10:27:13:0.769:2	0/1:12,5:28:17:0.294:2	./.	./.	./.
chr9	139256577	rs147703592	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,17:28:26:0.654:2
chr9	139258608	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:32:45:0.089:2	./.	./.
chr9	139266405	rs10781499	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:42,43:32:85:0.506:2	0/1:21,21:32:42:0.500:2	./.	0/1:92,76:32:168:0.452:2	./.	0/1:82,91:32:173:0.526:2	0/1:84,110:33:194:0.567:2	0/1:99,75:32:174:0.431:2	./.	0/1:74,46:33:120:0.383:2	0/1:51,74:33:125:0.592:2
chr9	139266496	rs4077515	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:28,33:31:61:0.541:2	0/1:14,21:31:35:0.600:2	./.	0/1:55,58:31:113:0.513:2	./.	0/1:37,68:31:105:0.648:2	0/1:49,80:31:129:0.620:2	0/1:59,59:30:118:0.500:2	./.	0/1:31,24:31:55:0.436:2	0/1:25,40:30:65:0.615:2
chr9	139270806	rs73670241	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,38:30:70:0.543:2	./.	./.	./.	./.	./.
chr9	139270829	rs73565172	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,39:30:93:0.419:2	./.	./.	./.	./.	./.	./.	./.
chr9	139270901	rs61745672	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,42:31:92:0.457:2	./.	./.	0/1:44,49:32:93:0.527:2	./.	./.	./.
chr9	139272045	rs79283598	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,22:29:52:0.423:2	./.	./.	./.
chr9	139272058	rs10781507	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:11,8:27:19:0.421:2	0/1:10,12:29:22:0.545:2	./.	0/1:25,20:30:45:0.444:2	./.	0/1:27,20:28:47:0.426:2	0/1:33,21:30:54:0.389:2	0/1:27,28:28:55:0.509:2	./.	0/1:24,6:28:30:0.200:2	0/1:15,32:29:48:0.681:2
chr9	139272502	rs3812565	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	0/1:2,6:31:8:0.750:2	./.	0/1:2,4:25:6:0.667:2	./.
chr9	139273288	rs3829112	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,21:30:63:0.333:2	0/1:60,33:31:93:0.355:2	./.	./.	./.
chr9	139273402	rs3812567	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,47:32:92:0.516:2	0/1:26,30:32:56:0.536:2	0/1:0,9:33:9:1.00:2	0/1:0,135:32:135:1.00:2	0/1:55,42:31:97:0.433:2	0/1:0,108:31:108:1.00:2	0/1:52,61:32:113:0.540:2	0/1:54,73:32:127:0.575:2	0/1:0,144:33:144:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,101:31:101:1.00:2
chr9	139275204	rs3812570	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:23,16:31:39:0.410:2	0/1:6,12:32:18:0.667:2	./.	0/1:2,61:32:63:0.968:2	./.	0/1:0,41:31:41:1.00:2	0/1:48,20:31:68:0.294:2	0/1:34,33:31:67:0.493:2	./.	0/1:28,16:32:44:0.364:2	0/1:7,33:32:40:0.825:2
chr9	139275294	rs3812571	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:20,26:31:46:0.565:2	0/1:5,11:33:16:0.688:2	./.	0/1:21,28:32:49:0.571:2	./.	0/1:0,50:32:51:1.00:2	0/1:30,15:31:45:0.333:2	0/1:28,35:32:63:0.556:2	./.	0/1:19,11:34:30:0.367:2	0/1:16,24:32:40:0.600:2
chr9	139276407	rs34569521	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:32:8:0.625:2	./.	./.	./.	0/1:27,45:32:72:0.625:2	./.	./.	./.	./.
chr9	139276430	rs34850728	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:30:6:0.500:2	./.	./.	./.	0/1:30,40:30:70:0.571:2	./.	./.	./.	0/1:10,13:29:23:0.565:2
chr9	139279173	rs10781510	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:12,7:31:19:0.368:2	0/1:4,11:32:15:0.733:2	./.	0/1:17,10:31:27:0.370:2	./.	0/1:5,7:30:12:0.583:2	./.	0/1:10,7:30:17:0.412:2	./.	0/1:7,6:32:13:0.462:2	0/1:14,8:32:22:0.364:2
chr9	139288692	rs11145863	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,21:32:68:0.309:2	0/1:50,21:33:71:0.296:2	./.	./.	./.
chr9	139289825	rs4266763	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:54,47:29:101:0.465:2	0/1:27,52:28:79:0.658:2	./.	0/1:76,58:30:134:0.433:2	./.	0/1:73,58:29:131:0.443:2	0/1:76,85:30:161:0.528:2	0/1:85,75:29:160:0.469:2	./.	0/1:54,55:29:110:0.505:2	0/1:77,71:28:148:0.480:2
chr9	139292762	rs75200747	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,19:32:42:0.452:2	./.	./.	./.	./.	./.
chr9	139297266	rs17855450	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,8:32:19:0.421:2	./.	./.	./.	./.	./.
chr9	139298580	rs1131992	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,58:31:142:0.408:2	0/1:83,78:31:161:0.484:2	./.	./.	./.
chr9	139298593	rs1051957	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:60,46:29:106:0.434:2	0/1:30,30:30:60:0.500:2	./.	0/1:93,68:30:163:0.422:2	./.	0/1:0,133:30:133:1.00:2	0/1:75,57:30:132:0.432:2	0/1:76,79:30:157:0.510:2	./.	0/1:68,53:30:121:0.438:2	0/1:31,44:28:75:0.587:2
chr9	139299080	rs73565196	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,35:32:69:0.507:2	./.	./.	./.	./.	./.	./.	./.
chr9	139299637	rs3812577	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,18:33:57:0.316:2	./.	./.	./.
chr9	139301655	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:31:109:0.037:2	./.	./.	./.
chr9	139301960	rs3812580	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,24:31:50:0.480:2	./.	./.	./.	./.	./.	./.	./.
chr9	139306467	rs10870144	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,69:30:196:0.352:2	0/1:108,75:31:183:0.410:2	./.	./.	./.
chr9	139311471	rs3812581	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:23,20:32:43:0.465:2	0/1:10,12:32:22:0.545:2	./.	0/1:40,36:32:76:0.474:2	./.	0/1:40,35:31:75:0.467:2	0/1:46,37:31:83:0.446:2	./.	./.	0/1:35,29:32:64:0.453:2	0/1:27,18:30:45:0.400:2
chr9	139316601	rs10870165	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:25,21:29:46:0.457:2	0/1:23,19:29:42:0.452:2	./.	0/1:1,85:30:86:0.988:2	./.	0/1:48,40:30:88:0.455:2	0/1:25,33:29:58:0.569:2	0/1:44,36:30:80:0.450:2	./.	0/1:26,23:30:49:0.469:2	0/1:24,19:28:43:0.442:2
chr9	139324737	rs33982662	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:16,23:31:40:0.590:2	0/1:11,6:31:17:0.353:2	./.	0/1:19,18:31:37:0.486:2	./.	0/1:29,29:28:58:0.500:2	./.	0/1:35,32:30:67:0.478:2	./.	0/1:16,22:31:38:0.579:2	0/1:22,19:30:41:0.463:2
chr9	139326959	rs35774078	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,27:31:58:0.466:2	./.	./.	./.	./.	./.
chr9	139327034	rs10870194	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:13,7:26:20:0.350:2	0/1:8,3:30:11:0.273:2	./.	0/1:0,27:29:27:1.00:2	./.	0/1:0,28:31:29:1.00:2	0/1:17,16:31:33:0.485:2	0/1:17,15:31:32:0.469:2	./.	0/1:20,13:31:33:0.394:2	0/1:11,12:26:23:0.522:2
chr9	139327439	rs10781542	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:41,23:33:64:0.359:2	0/1:22,11:33:33:0.333:2	./.	0/1:0,108:33:108:1.00:2	./.	0/1:1,100:33:101:0.990:2	0/1:58,66:33:124:0.532:2	0/1:76,58:33:134:0.433:2	./.	0/1:37,31:33:68:0.456:2	0/1:44,31:32:76:0.413:2
chr9	139328542	rs35498378	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,7:33:20:0.350:2	./.	./.	0/1:25,9:33:34:0.265:2	./.	./.	./.	./.
chr9	139329245	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,4:32:112:0.036:2	./.	./.	./.	./.	./.	./.
chr9	139342721	rs139964816	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,21:31:41:0.512:2	./.	./.	./.	./.	./.
chr9	139342747	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:32:38:0.079:2	./.	0/1:23,4:30:27:0.148:2
chr9	139342835	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:32:9:0.333:2	./.	./.
chr9	139342946	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,5:27:14:0.357:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	139350595	rs17610266	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,40:31:86:0.465:2	./.	./.	./.	./.	./.
chr9	139353898	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:33:88:0.045:2
chr9	139354501	rs113207461	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,32:32:78:0.410:2	./.	./.	./.	./.	./.	./.	./.
chr9	139368953	rs3812594	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:14,11:33:25:0.440:2	0/1:18,8:31:26:0.308:2	./.	0/1:36,16:32:52:0.308:2	./.	0/1:1,46:31:47:0.979:2	./.	0/1:29,27:32:56:0.482:2	./.	0/1:20,6:33:26:0.231:2	0/1:35,16:33:51:0.314:2
chr9	139369062	rs3812595	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:20,12:32:32:0.375:2	0/1:9,9:32:18:0.500:2	./.	0/1:42,25:31:67:0.373:2	./.	0/1:1,45:31:46:0.978:2	./.	0/1:37,26:31:63:0.413:2	./.	0/1:24,13:32:37:0.351:2	0/1:32,26:30:58:0.448:2
chr9	139369066	rs148167113	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,25:31:63:0.397:2	./.	./.	./.
chr9	139369212	rs17567909	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,5:31:6:0.833:2	./.	./.	./.	0/1:33,25:33:58:0.431:2	./.	./.	./.	./.
chr9	139369756	rs374699588	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,8:33:30:0.267:2	./.
chr9	139370217	rs76562693	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,27:31:54:0.500:2
chr9	139371342	rs11999525	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:12,11:31:23:0.478:2	./.	./.	0/1:23,14:32:37:0.378:2	./.	0/1:0,29:31:29:1.00:2	./.	0/1:25,12:30:37:0.324:2	./.	0/1:11,5:32:16:0.313:2	0/1:12,7:33:19:0.368:2
chr9	139371405	rs11999532	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:14,10:32:24:0.417:2	0/1:10,7:33:17:0.412:2	./.	0/1:32,29:32:62:0.475:2	./.	0/1:0,63:32:63:1.00:2	./.	0/1:40,20:33:60:0.333:2	./.	0/1:17,13:32:30:0.433:2	0/1:12,22:31:34:0.647:2
chr9	139371562	rs7852966	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,62:32:135:0.459:2	./.	./.	./.	./.
chr9	139371786	rs6560632	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:42,36:31:78:0.462:2	0/1:20,17:32:37:0.459:2	./.	0/1:0,93:32:93:1.00:2	./.	0/1:0,89:31:89:1.00:2	0/1:33,41:33:74:0.554:2	0/1:55,43:32:98:0.439:2	./.	0/1:26,31:33:57:0.544:2	0/1:43,50:32:93:0.538:2
chr9	139378914	rs34376913	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:9,4:28:13:0.308:2	./.	0/1:15,17:32:32:0.531:2	./.	0/1:0,29:33:29:1.00:2	./.	0/1:13,7:31:20:0.350:2	./.	0/1:12,3:34:15:0.200:2	0/1:8,6:31:14:0.429:2
chr9	139379393	rs73566994	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,8:31:25:0.320:2	./.	./.	./.	./.	./.	./.	./.
chr9	139379653	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,4:30:109:0.037:2	./.	./.	./.	./.	./.	./.
chr9	139380320	rs1139057	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,31:32:85:0.365:2	./.	0/1:39,22:33:61:0.361:2	0/1:23,23:32:46:0.500:2	0/1:37,25:32:62:0.403:2
chr9	139380345	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,35:31:104:0.337:2	./.	./.	./.
chr9	139390958	rs11574911	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:31:9:0.556:2	./.	./.	./.	./.	./.	./.	./.
chr9	139391636	rs2229974	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:39,41:31:80:0.513:2	0/1:31,26:31:57:0.456:2	0/1:6,7:29:13:0.538:2	./.	0/1:73,103:31:176:0.585:2	./.	./.	0/1:90,77:31:167:0.461:2	0/1:0,120:32:120:1.00:2	0/1:46,49:31:95:0.516:2	0/1:34,63:31:97:0.649:2
chr9	139397707	rs10521	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:27,21:32:48:0.438:2	0/1:11,14:32:25:0.560:2	0/1:6,3:25:9:0.333:2	./.	0/1:37,37:31:74:0.500:2	./.	./.	0/1:52,31:30:83:0.373:2	0/1:0,51:32:51:1.00:2	0/1:20,19:31:39:0.487:2	0/1:27,21:30:48:0.438:2
chr9	139401233	rs61751543	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,18:32:32:0.563:2	./.	./.	./.
chr9	139401831	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,9:15:64:0.141:2
chr9	139403472	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:32:176:0.023:2	./.	./.	./.	./.
chr9	139404400	rs373787791	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,31:30:59:0.525:2	./.	./.	./.	./.
chr9	139407932	rs2229971	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,55:30:113:0.487:2	0/1:82,58:31:140:0.414:2	0/1:51,45:29:96:0.469:2	0/1:89,80:30:169:0.473:2	0/1:71,64:30:135:0.474:2	./.	./.	./.
chr9	139407980	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,4:32:72:0.056:2	./.	./.	./.	./.	./.	./.	./.
chr9	139409115	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,9:16:83:0.108:2	./.	./.	./.	./.	./.	./.	./.
chr9	139410467	rs11574889	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,6:31:13:0.462:2
chr9	139413097	rs200520088	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,7:20:37:0.194:2	0/1:32,8:14:40:0.200:2	./.	0/1:32,19:21:51:0.373:2	0/1:26,18:16:44:0.409:2	0/1:35,12:19:47:0.255:2	0/1:29,12:16:42:0.293:2	0/1:28,19:18:47:0.404:2	0/1:38,11:16:49:0.224:2	0/1:23,9:21:32:0.281:2	0/1:12,6:17:18:0.333:2
chr9	139413179	rs201158068	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,42:31:87:0.483:2	./.	./.
chr9	139413211	rs202145498	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,8:15:58:0.143:2	0/1:42,11:14:54:0.208:2	0/1:61,16:18:81:0.208:2	./.	./.	0/1:19,5:18:25:0.208:2
chr9	139413908	rs2229975	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:32:10:0.556:2	./.	./.	./.	0/1:30,24:30:54:0.444:2	./.	./.	./.	./.
chr9	139417332	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.
chr9	139417464	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,5:20:8:0.625:2	./.	./.	./.	./.	./.
chr9	139418260	rs4489420	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,3:30:14:0.214:2	0/1:46,30:28:76:0.395:2	0/1:27,16:26:43:0.372:2	./.	0/1:0,30:29:30:1.00:2	0/1:33,26:28:59:0.441:2	./.	./.	./.
chr9	139564668	rs2297538	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,23:31:39:0.590:2	0/1:11,17:31:28:0.607:2	0/1:0,4:32:4:1.00:2	0/1:41,43:30:84:0.512:2	./.	0/1:0,61:30:61:1.00:2	0/1:58,41:31:99:0.414:2	./.	0/1:40,30:29:70:0.429:2	0/1:19,25:31:44:0.568:2	0/1:22,16:30:38:0.421:2
chr9	139565483	rs184078699	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,6:25:36:0.167:2	./.	./.	./.
chr9	139566748	rs78568191	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,35:27:79:0.443:2	./.	./.
chr9	139571430	rs142993240	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,29:31:59:0.500:2
chr9	139616742	rs945384	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:30:24:1.00:2	0/1:0,14:27:14:1.00:2	0/1:0,5:28:5:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,25:31:25:1.00:2	0/1:2,40:29:42:0.952:2	0/1:0,32:31:32:1.00:2	0/1:0,35:30:35:1.00:2	0/1:1,29:30:30:0.967:2
chr9	139617626	rs7038042	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,24:30:48:0.500:2	0/1:25,13:32:38:0.342:2	0/1:14,20:32:34:0.588:2	./.	0/1:16,15:31:31:0.484:2	./.	./.	./.
chr9	139617662	rs11849	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:33:7:0.857:2	./.	0/1:1,3:31:4:0.750:2	./.	./.	./.	./.	./.
chr9	139617742	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,16:32:25:0.640:2	./.	./.	./.	./.	./.	./.
chr9	139617836	rs6874	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,17:32:51:0.333:2	./.	./.	./.	./.	./.
chr9	139634495	rs9886752	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:22,17:31:39:0.436:2	0/1:20,7:31:27:0.259:2	./.	./.	./.	./.	./.	0/1:47,14:30:61:0.230:2	./.	./.	0/1:25,23:31:48:0.479:2
chr9	139635430	rs7848807	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:6,12:32:18:0.667:2	0/1:7,3:34:10:0.300:2	./.	./.	./.	./.	./.	0/1:19,20:31:39:0.513:2	./.	./.	0/1:4,15:31:19:0.789:2
chr9	139642895	rs200698922	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:32:103:0.039:2	./.	./.	./.	./.	./.
chr9	139648915	rs143742468	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,10:30:29:0.345:2	./.	./.	./.	./.
chr9	139648918	rs2282261	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:14,8:29:22:0.364:2	0/1:7,7:30:14:0.500:2	./.	./.	./.	./.	./.	0/1:18,11:28:29:0.379:2	./.	./.	0/1:8,9:27:17:0.529:2
chr9	139649580	rs879467	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,9:31:27:0.333:2	0/1:3,14:31:17:0.824:2	0/1:0,10:32:10:1.00:2	0/1:20,11:29:31:0.355:2	0/1:0,40:30:40:1.00:2	0/1:1,40:29:41:0.976:2	0/1:0,32:31:32:1.00:2	0/1:21,23:32:45:0.523:2	0/1:0,36:32:36:1.00:2	0/1:0,26:30:26:1.00:2	0/1:17,8:31:25:0.320:2
chr9	139649612	rs2282258	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:14,17:32:31:0.548:2	0/1:15,5:31:20:0.250:2	./.	./.	./.	./.	./.	0/1:29,24:32:53:0.453:2	./.	./.	0/1:8,14:31:22:0.636:2
chr9	139652329	rs7045416	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:9,6:29:15:0.400:2	0/1:9,6:33:15:0.400:2	./.	./.	./.	./.	./.	0/1:26,22:33:48:0.458:2	./.	./.	0/1:13,9:31:22:0.409:2
chr9	139652338	rs9411272	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:8,8:30:16:0.500:2	0/1:6,7:31:13:0.538:2	0/1:0,7:29:7:1.00:2	0/1:26,20:31:46:0.435:2	0/1:0,31:29:31:1.00:2	0/1:0,37:29:37:1.00:2	0/1:0,50:30:50:1.00:2	0/1:21,28:30:49:0.571:2	0/1:0,46:31:46:1.00:2	./.	0/1:9,14:29:23:0.609:2
chr9	139656670	rs2297722	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,35:32:36:0.972:2	0/1:1,21:31:22:0.955:2	0/1:0,8:31:8:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,48:30:48:1.00:2	0/1:21,22:31:43:0.512:2	0/1:2,53:31:55:0.964:2	0/1:0,46:30:46:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,44:31:44:1.00:2
chr9	139656706	rs2297723	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,60:32:62:0.968:2	0/1:0,38:31:38:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,85:32:85:1.00:2	0/1:1,96:32:97:0.990:2	0/1:31,52:31:83:0.627:2	0/1:0,97:33:97:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,51:32:51:1.00:2	0/1:1,64:30:66:0.985:2
chr9	139657834	rs9987876	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:30:23:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,47:30:48:1.00:2	0/1:18,23:32:41:0.561:2	0/1:0,50:30:51:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,23:31:23:1.00:2
chr9	139658923	rs143124770	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,56:31:135:0.415:2	./.	./.	./.	./.
chr9	139690840	rs1055995	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,25:30:54:0.463:2	0/1:8,17:29:25:0.680:2	0/1:0,10:27:10:1.00:2	0/1:26,25:29:51:0.490:2	0/1:0,97:28:97:1.00:2	./.	0/1:0,78:29:78:1.00:2	0/1:1,92:28:93:0.989:2	0/1:0,51:30:51:1.00:2	0/1:0,42:30:42:1.00:2	0/1:26,22:27:48:0.458:2
chr9	139693596	rs945386	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:30,24:29:54:0.444:2	0/1:21,11:28:32:0.344:2	./.	0/1:47,52:30:99:0.525:2	./.	./.	0/1:55,45:29:100:0.450:2	0/1:1,83:29:84:0.988:2	./.	0/1:34,23:30:57:0.404:2	0/1:0,65:28:65:1.00:2
chr9	139694521	rs4546744	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:11,6:32:17:0.353:2	./.	./.	0/1:17,7:32:24:0.292:2	./.	./.	0/1:19,8:31:27:0.296:2	0/1:1,27:30:28:0.964:2	./.	0/1:5,8:31:13:0.615:2	0/1:0,7:31:7:1.00:2
chr9	139694569	rs7859194	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	0/1:0,2:28:2:1.00:2
chr9	139698977	rs11145892	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,20:30:33:0.606:2	./.	./.	./.	./.	./.	./.	./.
chr9	139700605	rs2811795	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,13:29:29:0.448:2	0/1:9,15:29:24:0.625:2	0/1:0,10:32:10:1.00:2	0/1:0,72:29:73:1.00:2	0/1:0,70:29:70:1.00:2	0/1:0,68:30:68:1.00:2	0/1:48,49:29:98:0.505:2	0/1:52,56:30:108:0.519:2	0/1:1,62:30:63:0.984:2	0/1:18,25:29:43:0.581:2	./.
chr9	139701108	rs2254143	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,20:31:43:0.465:2	0/1:14,17:31:31:0.548:2	0/1:0,4:33:4:1.00:2	0/1:26,19:31:45:0.422:2	0/1:0,69:32:69:1.00:2	0/1:0,50:32:50:1.00:2	0/1:32,30:30:62:0.484:2	0/1:38,37:33:75:0.493:2	0/1:0,44:33:44:1.00:2	0/1:26,12:32:38:0.316:2	./.
chr9	139701280	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:176,4:32:180:0.022:2	./.	./.	./.	./.	./.	./.
chr9	139726239	rs2811748	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:2,32:31:34:0.941:2	0/1:0,20:32:20:1.00:2	0/1:1,88:32:89:0.989:2	0/1:0,101:32:101:1.00:2	0/1:0,90:32:90:1.00:2	0/1:51,46:32:97:0.474:2	0/1:76,43:32:119:0.361:2	0/1:0,63:32:63:1.00:2	0/1:0,59:33:59:1.00:2	0/1:33,24:32:57:0.421:2
chr9	139731969	rs2811742	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	0/1:0,2:31:2:1.00:2	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.
chr9	139732331	rs2811741	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,49:33:102:0.480:2	0/1:33,42:31:75:0.560:2	0/1:0,26:33:26:1.00:2	0/1:87,98:32:185:0.530:2	0/1:0,186:32:186:1.00:2	0/1:0,178:32:178:1.00:2	0/1:94,96:32:190:0.505:2	0/1:99,91:31:190:0.479:2	0/1:0,145:33:145:1.00:2	0/1:88,75:31:163:0.460:2	0/1:0,126:32:126:1.00:2
chr9	139732462	rs2811740	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,38:30:71:0.535:2	0/1:31,36:30:67:0.537:2	./.	./.	./.	./.	0/1:28,37:30:65:0.569:2
chr9	139740600	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	139748483	rs45449193	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,27:31:42:0.643:2
chr9	139749067	rs7869864	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:32:45:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,7:30:7:1.00:2	0/1:11,24:30:35:0.686:2	0/1:0,38:31:38:1.00:2	0/1:15,17:30:32:0.531:2	0/1:12,23:32:35:0.657:2	0/1:5,25:31:30:0.833:2	0/1:0,36:32:36:1.00:2	0/1:1,32:32:33:0.970:2	0/1:0,19:30:19:1.00:2
chr9	139749788	rs145077934	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,71:31:152:0.467:2	./.	./.	./.	./.	./.	./.
chr9	139750061	rs138811323	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,31:30:64:0.484:2	./.	./.	./.	./.	./.
chr9	139751164	rs117093136	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,40:30:103:0.388:2	./.	./.	./.
chr9	139751625	rs143519494	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,31:31:72:0.431:2	./.	./.	./.	./.	./.	./.	./.
chr9	139752899	rs2275156	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:27:3:1.00:2	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	0/1:0,4:24:4:1.00:2	0/1:0,3:26:3:1.00:2	./.
chr9	139814799	rs148589670	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,54:33:125:0.432:2	./.	./.
chr9	139815553	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:30:119:0.034:2	./.	./.	./.	./.
chr9	139836077	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:33:73:0.055:2	./.	./.
chr9	139839904	rs2071006	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:30:33:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,5:30:5:1.00:2	0/1:1,16:30:17:0.941:2	0/1:0,38:30:38:1.00:2	./.	./.	./.	0/1:0,32:31:32:1.00:2	0/1:0,28:30:28:1.00:2	0/1:14,14:28:28:0.500:2
chr9	139840543	rs7850844	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,67:33:67:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,43:32:43:1.00:2
chr9	139840560	rs17613	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,22:30:52:0.423:2	./.	0/1:29,15:31:45:0.341:2	./.	./.	./.
chr9	139840580	rs20574	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,16:31:45:0.356:2	./.	0/1:28,13:31:41:0.317:2	./.	./.	./.
chr9	139841132	rs150744928	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,17:29:31:0.548:2	./.	./.
chr9	139841212	rs41309980	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,21:28:33:0.636:2	./.	0/1:8,4:29:12:0.333:2	./.	./.	./.
chr9	139848688	rs4880175	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,83:32:83:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,12:31:12:1.00:2	0/1:1,124:31:126:0.992:2	0/1:0,189:31:189:1.00:2	0/1:97,81:31:178:0.455:2	0/1:2,189:31:191:0.990:2	0/1:123,77:31:200:0.385:2	0/1:0,134:32:134:1.00:2	0/1:0,145:32:145:1.00:2	0/1:69,56:31:125:0.448:2
chr9	139849843	rs55888789	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:1,38:31:39:0.974:2	0/1:0,27:32:27:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:0,40:31:40:1.00:2	./.
chr9	139863841	rs11787585	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,8:31:17:0.471:2	./.	0/1:48,86:30:134:0.642:2	./.	0/1:42,44:31:86:0.512:2	0/1:68,68:30:136:0.500:2	./.	./.	./.
chr9	139863909	rs11787588	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:32:11:0.727:2	./.	0/1:22,34:31:56:0.607:2	./.	0/1:27,23:32:50:0.460:2	0/1:37,25:32:62:0.403:2	./.	./.	./.
chr9	139864341	rs2386136	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	0/1:1,4:24:5:0.800:2	0/1:0,3:27:3:1.00:2	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.
chr9	139864438	rs12351283	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,21:31:47:0.447:2	./.	0/1:27,18:32:45:0.400:2	0/1:41,26:32:67:0.388:2	./.	./.	./.
chr9	139866247	rs11790360	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:32:11:0.273:2	./.	0/1:62,37:31:99:0.374:2	0/1:1,73:32:74:0.986:2	0/1:53,41:32:94:0.436:2	0/1:0,85:32:85:1.00:2	./.	./.	0/1:40,32:33:72:0.444:2
chr9	139872048	rs4880179	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:29:73:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,6:26:6:1.00:2	0/1:0,94:29:94:1.00:2	0/1:2,104:30:106:0.981:2	0/1:0,93:30:93:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,92:29:92:1.00:2	0/1:0,87:30:87:1.00:2	0/1:0,75:30:75:1.00:2	0/1:0,50:29:50:1.00:2
chr9	139879170	rs17578859	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,12:31:23:0.522:2	0/1:22,20:31:42:0.476:2	0/1:23,20:29:43:0.465:2	./.	./.	0/1:12,13:32:25:0.520:2
chr9	139879364	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,28:31:49:0.571:2	0/1:14,14:31:28:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	139888186	rs141642761	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,10:32:35:0.286:2	./.	./.	./.	./.
chr9	139888201	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,8:30:26:0.308:2	0/1:6,9:31:15:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	139890105	rs141765089	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,32:32:53:0.604:2	./.	./.	./.	./.	./.	./.	./.
chr9	139904037	rs7048567	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:29:46:1.00:2	0/1:0,24:28:24:1.00:2	0/1:0,11:30:11:1.00:2	0/1:1,98:29:99:0.990:2	0/1:0,123:28:123:1.00:2	0/1:49,56:29:105:0.533:2	0/1:53,53:30:106:0.500:2	0/1:66,47:30:113:0.416:2	0/1:0,65:30:65:1.00:2	0/1:0,59:30:59:1.00:2	0/1:28,21:29:50:0.429:2
chr9	139904722	rs34125425	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,19:32:28:0.679:2	./.	./.	./.	./.	./.
chr9	139905141	rs112887513	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,80:30:180:0.444:2	./.	./.	./.	./.	./.
chr9	139906359	rs2271862	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:31:40:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,68:31:68:1.00:2	0/1:0,170:31:170:1.00:2	0/1:37,36:30:73:0.493:2	0/1:77,69:31:146:0.473:2	0/1:59,53:31:112:0.473:2	0/1:0,100:32:100:1.00:2	0/1:0,54:31:54:1.00:2	0/1:23,19:31:42:0.452:2
chr9	139908438	rs144831765	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,7:29:8:0.875:2	./.	./.	./.	./.
chr9	139908464	rs147917446	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	./.	./.	./.	./.
chr9	139911983	rs12348881	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,79:27:182:0.436:2	0/1:51,48:27:99:0.485:2	0/1:96,66:27:162:0.407:2	./.	./.	./.	./.
chr9	139912484	rs908832	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:28:51:1.00:2	0/1:0,33:28:33:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,69:29:69:1.00:2	0/1:0,146:28:146:1.00:2	0/1:0,75:29:75:1.00:2	0/1:0,107:29:107:1.00:2	0/1:0,92:29:92:1.00:2	0/1:0,76:29:76:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,58:28:58:1.00:2
chr9	139912670	rs200143545	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,6:32:59:0.102:2	./.	./.	./.	./.
chr9	139913239	rs908828	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:33:43:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,66:33:66:1.00:2	0/1:1,119:32:120:0.992:2	0/1:0,83:33:83:1.00:2	0/1:0,102:33:102:1.00:2	0/1:0,79:33:79:1.00:2	0/1:1,61:33:62:0.984:2	0/1:0,48:33:48:1.00:2	0/1:0,29:33:29:1.00:2
chr9	139915470	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,4:30:18:0.222:2	./.
chr9	139916833	rs35590326	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,27:30:66:0.409:2	0/1:55,32:30:87:0.368:2	0/1:36,30:30:66:0.455:2	./.	./.	./.	./.
chr9	139916879	rs34039859	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,42:29:99:0.424:2	./.	0/1:72,59:30:131:0.450:2	./.	./.	./.	./.
chr9	139918686	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:33:51:0.078:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	139923265	rs4880189	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,13:31:13:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,22:34:22:1.00:2	0/1:18,12:30:30:0.400:2	0/1:1,9:31:10:0.900:2	0/1:0,13:32:13:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,12:32:12:1.00:2	0/1:9,4:30:13:0.308:2
chr9	139925927	rs1139444	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,4:32:5:0.800:2	0/1:4,4:26:8:0.500:2	./.	./.	./.	./.	./.
chr9	139925983	rs117125309	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,38:31:56:0.679:2	./.	./.	./.	./.	./.
chr9	139926402	rs7469569	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:32:31:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,67:33:67:1.00:2	0/1:32,36:31:68:0.529:2	./.	0/1:39,35:31:74:0.473:2	0/1:0,113:32:113:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,39:31:39:1.00:2	0/1:38,34:32:72:0.472:2
chr9	139929435	rs12337910	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,7:31:23:0.304:2	0/1:7,3:32:10:0.300:2	0/1:6,11:31:18:0.647:2	./.	./.	./.	./.
chr9	139934298	rs140247910	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,41:31:69:0.594:2	./.	./.	./.	./.	./.	./.	./.
chr9	139937795	rs10781535	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:32:62:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,91:32:92:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,82:32:82:1.00:2	0/1:2,91:32:93:0.978:2	0/1:0,95:33:95:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,65:32:65:1.00:2
chr9	139937799	rs10781536	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:30:63:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,17:31:17:1.00:2	0/1:1,64:30:66:0.985:2	0/1:0,87:30:87:1.00:2	0/1:0,85:30:85:1.00:2	0/1:0,80:30:80:1.00:2	0/1:0,93:30:94:1.00:2	0/1:0,90:31:92:1.00:2	0/1:0,49:31:50:1.00:2	0/1:0,65:31:65:1.00:2
chr9	139943112	rs17853460	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,4:33:13:0.308:2	./.	./.	./.	./.	0/1:8,3:33:11:0.273:2
chr9	139943151	rs146486854	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,14:30:25:0.560:2	./.	./.	./.	./.
chr9	139943156	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,27:31:39:0.692:2	./.	./.	./.
chr9	139943429	rs7873815	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	139944736	rs17853462	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,12:31:68:0.176:2	0/1:31,8:32:39:0.205:2	0/1:4,3:32:7:0.429:2	0/1:56,6:33:63:0.097:2	0/1:42,7:29:49:0.143:2	0/1:30,23:29:53:0.434:2	0/1:49,11:30:60:0.183:2	0/1:61,27:29:88:0.307:2	0/1:54,11:31:65:0.169:2	0/1:40,14:31:54:0.259:2	0/1:31,35:31:66:0.530:2
chr9	139945363	rs2292925	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,17:31:42:0.405:2	./.	./.	./.	./.	0/1:24,14:30:38:0.368:2
chr9	139972900	rs10870176	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,3:32:5:0.600:2	0/1:4,4:33:8:0.500:2	./.	0/1:0,3:31:3:1.00:2	0/1:6,3:34:9:0.333:2	0/1:0,3:35:3:1.00:2	./.
chr9	139973129	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,6:32:111:0.054:2	./.	./.	./.	./.	./.	./.
chr9	139973582	rs75127829	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,25:30:59:0.424:2	./.	./.	./.
chr9	139973820	rs7037849	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,44:32:93:0.473:2	0/1:27,10:32:37:0.270:2	./.	0/1:80,59:31:139:0.424:2	0/1:103,65:31:168:0.387:2	./.	0/1:2,143:30:145:0.986:2	./.	0/1:69,78:32:147:0.531:2	./.	0/1:0,104:31:104:1.00:2
chr9	139977139	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,4:33:62:0.065:2	./.	./.	./.	./.	./.	./.	./.
chr9	139981627	rs968733	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,20:32:20:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,42:32:43:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,65:30:65:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,31:30:31:1.00:2
chr9	140002136	rs117994893	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,6:31:11:0.545:2	./.
chr9	140002187	rs12000517	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:28:4:1.00:2	./.	0/1:0,4:29:4:1.00:2	./.	0/1:0,4:29:4:1.00:2	./.	0/1:0,6:29:6:1.00:2	./.
chr9	140002220	rs10117795	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,7:32:7:1.00:2	0/1:0,5:31:5:1.00:2	./.	0/1:1,12:30:13:0.923:2	0/1:0,5:30:5:1.00:2	0/1:5,8:31:13:0.615:2	0/1:0,4:29:4:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,10:31:10:1.00:2	./.
chr9	140002261	rs11790092	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,10:28:29:0.345:2	0/1:7,11:24:18:0.611:2	0/1:0,3:26:3:1.00:2	0/1:22,24:27:46:0.522:2	0/1:23,10:28:33:0.303:2	0/1:26,31:26:57:0.544:2	./.	0/1:1,50:27:51:0.980:2	0/1:18,15:25:33:0.455:2	0/1:0,35:25:35:1.00:2	./.
chr9	140002300	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,4:33:96:0.042:2	./.	./.	./.	./.	./.	./.	./.
chr9	140002875	rs34355967	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,34:31:70:0.486:2	./.	./.
chr9	140002989	rs4880091	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:29:61:1.00:2	0/1:1,61:28:62:0.984:2	0/1:0,19:29:19:1.00:2	0/1:0,111:29:111:1.00:2	0/1:0,108:29:108:1.00:2	0/1:60,72:30:132:0.545:2	0/1:1,160:30:161:0.994:2	0/1:0,155:29:155:1.00:2	0/1:0,150:30:150:1.00:2	0/1:0,112:29:112:1.00:2	0/1:0,95:28:95:1.00:2
chr9	140002995	rs118117962	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,48:32:106:0.453:2	./.	./.	./.	./.	./.	./.
chr9	140006202	rs13631	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,13:31:47:0.277:2	0/1:21,14:32:35:0.400:2	./.	0/1:33,27:30:60:0.450:2	0/1:30,13:30:43:0.302:2	./.	0/1:2,37:30:39:0.949:2	./.	0/1:43,16:31:59:0.271:2	./.	0/1:0,67:30:67:1.00:2
chr9	140006425	rs10747048	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:29:37:1.00:2	0/1:0,33:28:33:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,74:29:74:1.00:2	0/1:0,136:28:136:1.00:2	0/1:44,47:29:91:0.516:2	0/1:1,98:28:99:0.990:2	0/1:0,112:28:112:1.00:2	0/1:0,83:29:84:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,58:28:58:1.00:2
chr9	140008750	rs10747049	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,8:31:8:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,3:33:3:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,14:32:14:1.00:2	0/1:7,5:33:12:0.417:2	0/1:0,13:30:13:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,3:29:3:1.00:2
chr9	140008934	rs11145999	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,5:33:7:0.714:2	0/1:0,2:31:2:1.00:2	0/1:4,5:32:9:0.556:2	./.	0/1:8,9:32:17:0.529:2	./.	0/1:0,17:31:17:1.00:2	0/1:6,12:31:18:0.667:2	0/1:0,16:33:16:1.00:2	./.
chr9	140008950	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,4:32:23:0.174:2	./.
chr9	140051238	rs6293	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:30:5:0.600:2	./.	0/1:15,7:30:22:0.318:2	./.	./.	0/1:0,8:31:8:1.00:2	./.	0/1:9,6:27:15:0.400:2	./.
chr9	140051376	rs1126442	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:28:13:0.538:2	./.	0/1:25,30:29:55:0.545:2	./.	./.	0/1:0,86:30:86:1.00:2	./.	0/1:6,32:29:38:0.842:2	./.
chr9	140053136	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,4:24:28:0.143:2	./.	./.	./.	./.
chr9	140077639	rs11549105	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,4:29:12:0.333:2	./.	0/1:91,98:31:189:0.519:2	./.	./.	0/1:106,88:31:194:0.454:2	./.	./.	./.
chr9	140079522	rs11549106	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:26:8:0.750:2	./.	0/1:47,44:30:91:0.484:2	./.	./.	0/1:42,46:30:88:0.523:2	./.	./.	./.
chr9	140082529	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:31:29:0.138:2	./.	./.	./.
chr9	140108857	rs73563696	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,36:28:79:0.456:2	./.	./.	0/1:23,28:29:51:0.549:2	./.
chr9	140110555	rs62587579	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,20:31:61:0.328:2	./.	0/1:30,33:31:63:0.524:2	./.	./.	./.
chr9	140115394	.	T	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,13:14:34:0.394:2	./.	./.	0/1:27,25:14:52:0.481:2	0/1:24,17:12:41:0.415:2	0/1:25,20:10:45:0.444:2	./.	0/1:24,19:11:43:0.442:2	0/1:25,22:11:47:0.468:2	./.	./.
chr9	140115401	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,16:10:52:0.308:2	./.	./.
chr9	140115554	rs144152667	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,21:31:53:0.396:2	./.	./.	./.
chr9	140119572	rs7389591	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,3:32:15:0.200:2	./.	./.	0/1:4,13:32:17:0.765:2	./.	./.	0/1:7,4:33:11:0.364:2	./.
chr9	140120396	rs6606566	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,3:30:3:1.00:2	./.	./.	0/1:0,6:29:6:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,4:29:4:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,2:31:2:1.00:2	./.	./.	./.
chr9	140127051	rs34372115	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:5,5:33:10:0.500:2	0/1:0,5:32:5:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:5,9:28:14:0.643:2	./.
chr9	140128085	rs28407527	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,35:33:67:0.522:2	0/1:20,12:33:32:0.375:2	0/1:8,6:33:14:0.429:2	0/1:44,40:32:84:0.476:2	./.	0/1:0,88:32:89:1.00:2	0/1:5,154:33:159:0.969:2	0/1:68,62:32:130:0.477:2	./.	0/1:42,43:32:85:0.506:2	./.
chr9	140130580	rs146854507	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,8:32:21:0.381:2	0/1:5,8:31:13:0.615:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	140130606	rs28542318	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,18:31:18:1.00:2	0/1:0,14:31:14:1.00:2	./.	0/1:0,22:31:22:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,15:31:15:1.00:2	0/1:3,4:31:7:0.571:2	0/1:0,7:32:7:1.00:2	0/1:0,10:31:10:1.00:2
chr9	140137186	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,33:31:60:0.550:2	./.	./.	./.	./.	./.	./.	./.
chr9	140137382	rs201369773	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,22:13:78:0.282:2	0/1:71,16:10:87:0.184:2	0/1:52,7:22:60:0.119:2	0/1:54,17:14:71:0.239:2	0/1:64,10:14:75:0.135:2	0/1:42,7:16:49:0.143:2	./.	./.
chr9	140139184	rs4073074	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,45:30:110:0.409:2	./.	./.	./.
chr9	140139757	rs9775264	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,43:29:44:0.977:2	0/1:0,31:30:31:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,62:29:62:1.00:2	0/1:0,55:29:55:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,74:29:74:1.00:2	0/1:0,71:30:71:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,39:30:39:1.00:2
chr9	140140104	rs13300833	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,38:25:68:0.567:2	./.	./.	./.	./.	./.
chr9	140140111	rs74872755	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,37:31:78:0.474:2	./.	./.	./.
chr9	140140117	rs114429903	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,28:31:57:0.491:2	./.	./.	./.	./.
chr9	140147152	rs28376526	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,11:28:20:0.550:2	0/1:2,7:28:9:0.778:2	0/1:5,3:26:8:0.375:2	0/1:11,8:27:19:0.421:2	0/1:0,40:28:40:1.00:2	0/1:0,36:28:36:1.00:2	0/1:0,10:28:10:1.00:2	0/1:0,25:26:25:1.00:2	0/1:14,14:30:28:0.500:2	0/1:6,5:29:11:0.455:2	0/1:6,8:28:14:0.571:2
chr9	140147273	rs61759822	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:6,6:29:12:0.500:2	0/1:8,5:32:13:0.385:2	./.	./.	./.	./.	./.	./.	./.	0/1:3,8:31:11:0.727:2	./.
chr9	140166597	rs61751916	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,72:32:155:0.465:2	./.
chr9	140167022	rs3204123	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,24:31:64:0.375:2	0/1:18,14:32:32:0.438:2	0/1:8,5:31:13:0.385:2	0/1:61,50:30:111:0.450:2	0/1:0,105:31:105:1.00:2	0/1:2,110:31:112:0.982:2	0/1:0,62:31:62:1.00:2	0/1:53,54:31:107:0.505:2	0/1:40,39:31:79:0.494:2	0/1:22,31:30:53:0.585:2	0/1:21,20:31:41:0.488:2
chr9	140173960	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.
chr9	140175374	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:31:64:0.063:2	./.	./.
chr9	140176294	rs28455773	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,17:29:41:0.415:2	0/1:0,33:28:33:1.00:2	0/1:0,37:28:37:1.00:2	0/1:14,19:31:33:0.576:2	0/1:2,36:28:38:0.947:2	0/1:25,20:29:45:0.444:2	0/1:18,11:30:29:0.379:2	0/1:24,13:30:37:0.351:2
chr9	140176814	rs112239920	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2
chr9	140177040	rs13301565	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,43:30:83:0.518:2	0/1:39,30:32:69:0.435:2	0/1:0,15:30:15:1.00:2	0/1:76,52:30:128:0.406:2	0/1:0,99:30:99:1.00:2	0/1:0,116:30:116:1.00:2	0/1:0,98:30:98:1.00:2	0/1:0,154:29:154:1.00:2	0/1:86,71:31:157:0.452:2	0/1:1,84:30:85:0.988:2	0/1:0,152:30:152:1.00:2
chr9	140242594	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:33:160:0.025:2	./.	./.
chr9	140242634	rs4078069	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,17:29:25:0.680:2	0/1:67,80:29:147:0.544:2	./.	./.	./.	./.	./.	./.	./.
chr9	140243589	rs114716688	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,14:32:20:0.700:2	./.	./.	./.	./.	./.	./.	./.
chr9	140243679	rs372293078	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,10:32:23:0.435:2	./.	./.
chr9	140243844	rs28545754	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,16:30:19:0.842:2	0/1:5,6:32:11:0.545:2	./.	0/1:6,17:30:23:0.739:2	0/1:0,32:29:32:1.00:2	0/1:24,31:30:55:0.564:2	0/1:12,16:29:28:0.571:2	0/1:23,33:30:56:0.589:2	0/1:8,19:31:27:0.704:2	0/1:2,12:31:14:0.857:2	0/1:2,7:31:9:0.778:2
chr9	140243880	rs35097575	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,13:31:27:0.481:2	./.	./.	./.	./.
chr9	140243968	rs79140116	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,18:30:27:0.667:2	./.	./.	./.	./.	0/1:1,5:32:6:0.833:2
chr9	140243973	rs116575725	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,9:31:14:0.643:2	./.	./.
chr9	140245853	rs201801336	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,34:32:72:0.472:2	./.	./.
chr9	140247103	rs115998217	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,9:30:12:0.750:2	./.	./.
chr9	140247143	rs7020732	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,16:31:27:0.593:2	./.	0/1:2,3:32:5:0.600:2	0/1:0,59:32:59:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,34:32:34:1.00:2	0/1:7,7:33:14:0.500:2	0/1:17,13:31:30:0.433:2	0/1:0,27:32:27:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,9:28:9:1.00:2
chr9	140248774	rs142930083	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,25:32:45:0.556:2	./.
chr9	140248846	rs115029477	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,15:33:37:0.405:2	./.	./.
chr9	140249147	rs143654067	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,20:32:41:0.488:2	./.	./.
chr9	140250818	rs7389423	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:8,10:33:18:0.556:2	0/1:11,11:32:22:0.500:2	0/1:2,3:32:5:0.600:2	0/1:0,44:32:44:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,32:30:32:1.00:2	0/1:18,26:32:44:0.591:2	0/1:36,24:33:60:0.400:2	0/1:1,33:33:34:0.971:2	0/1:0,29:34:29:1.00:2	0/1:0,30:33:30:1.00:2
chr9	140262424	rs11507683	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,9:31:30:0.300:2	./.	0/1:14,19:29:33:0.576:2	./.	./.	./.	./.	0/1:15,16:29:31:0.516:2
chr9	140262426	rs11533158	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,9:32:21:0.429:2	0/1:3,4:32:7:0.571:2	./.	0/1:9,19:31:28:0.679:2	0/1:0,31:31:31:1.00:2	0/1:19,14:30:33:0.424:2	0/1:14,18:31:32:0.563:2	0/1:27,28:32:55:0.509:2	0/1:22,20:32:42:0.476:2	0/1:9,9:32:18:0.500:2	0/1:16,16:33:32:0.500:2
chr9	140267490	rs143312119	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,27:29:63:0.429:2	./.	./.	./.
chr9	140268046	rs7389250	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,18:33:43:0.419:2	./.	0/1:11,16:34:27:0.593:2	./.	./.
chr9	140277794	rs80074261	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,12:32:30:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	140277826	rs13291830	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:84,78:31:162:0.481:2	0/1:79,66:32:145:0.455:2	0/1:19,8:32:27:0.296:2	0/1:0,180:31:180:1.00:2	./.	0/1:95,97:32:192:0.505:2	0/1:63,80:31:143:0.559:2	0/1:77,109:31:186:0.586:2	0/1:75,93:32:169:0.554:2	0/1:1,165:32:166:0.994:2	0/1:0,161:31:161:1.00:2
chr9	140322570	rs146657444	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,101:31:163:0.620:2	./.	./.	./.	./.	./.
chr9	140327663	rs34155071	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,18:33:18:1.00:2	0/1:0,17:32:17:1.00:2	./.	0/1:23,15:32:38:0.395:2	./.	0/1:6,13:29:19:0.684:2	0/1:1,10:33:11:0.909:2	0/1:1,18:32:19:0.947:2	0/1:7,11:34:18:0.611:2	./.	./.
chr9	140328047	rs183058926	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,7:31:12:0.583:2	./.	./.	./.	./.	./.	./.
chr9	140330976	rs13297080	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:1,44:32:45:0.978:2	0/1:0,18:33:18:1.00:2	0/1:0,105:32:105:1.00:2	0/1:87,75:32:162:0.463:2	0/1:0,124:32:124:1.00:2	0/1:2,131:31:133:0.985:2	0/1:0,140:32:140:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,69:32:69:1.00:2
chr9	140332478	rs6606582	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,37:30:38:0.974:2	0/1:0,23:27:23:1.00:2	0/1:0,7:25:7:1.00:2	0/1:0,81:29:81:1.00:2	0/1:77,44:28:121:0.364:2	0/1:0,83:29:83:1.00:2	0/1:0,105:29:105:1.00:2	0/1:0,111:29:111:1.00:2	0/1:0,76:29:76:1.00:2	0/1:0,75:28:75:1.00:2	0/1:0,69:29:69:1.00:2
chr9	140344464	rs150450906	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,11:32:16:0.688:2	./.	./.	./.	./.	./.	./.	./.
chr9	140347233	rs149475082	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,4:32:17:0.235:2	./.	./.	./.	./.	./.	./.	./.
chr9	140356422	rs28452008	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,13:32:13:1.00:2	0/1:0,7:32:7:1.00:2	./.	0/1:27,14:31:41:0.341:2	./.	0/1:11,14:33:25:0.560:2	0/1:8,6:32:14:0.429:2	0/1:0,16:32:16:1.00:2	0/1:5,16:33:21:0.762:2	0/1:5,3:33:8:0.375:2	./.
chr9	140357943	rs78550888	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:33:10:0.600:2	./.	./.	0/1:19,33:32:52:0.635:2	./.	./.	0/1:26,23:33:49:0.469:2	0/1:15,25:33:40:0.625:2	./.
chr9	140357972	rs1891627	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:30:16:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,22:32:22:1.00:2	0/1:2,33:30:35:0.943:2	0/1:0,35:31:35:1.00:2	0/1:2,31:30:33:0.939:2	0/1:0,35:31:35:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,19:30:20:1.00:2
chr9	140358581	rs4962237	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,31:29:47:0.660:2	0/1:19,27:30:46:0.587:2
chr9	140358896	rs35177111	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,46:31:106:0.434:2	./.	./.	./.	./.	./.	./.	./.
chr9	140361847	rs61738892	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,66:31:119:0.555:2	./.	./.	./.	./.	./.	./.
chr9	140373607	rs61747526	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,6:31:9:0.667:2	0/1:6,6:32:12:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	140374861	rs1891630	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:31:75:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,104:32:104:1.00:2	0/1:2,149:32:151:0.987:2	0/1:0,105:32:105:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,132:32:132:1.00:2	0/1:0,88:33:88:1.00:2	0/1:0,83:33:83:1.00:2	0/1:0,73:32:73:1.00:2
chr9	140375394	rs377193603	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,23:32:43:0.535:2	./.	./.	./.	./.	./.	./.	./.
chr9	140392616	rs61754920	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,33:31:68:0.485:2	./.	./.	0/1:79,53:31:132:0.402:2	./.	./.	./.	./.
chr9	140395253	rs144383658	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,37:32:86:0.430:2	./.	./.	./.
chr9	140414410	rs11137410	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,37:33:75:0.493:2	./.	./.	./.	./.
chr9	140459011	rs200475571	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,7:33:17:0.412:2	./.	./.	./.	./.	./.	./.	./.	./.
chr9	140470607	rs139694147	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,26:33:61:0.426:2	0/1:12,6:31:18:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	140477058	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,5:28:101:0.050:2	./.	./.	./.
chr9	140509075	rs72765183	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,25:31:47:0.532:2	./.	./.	./.	./.
chr9	140509302	rs35018943	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,17:31:37:0.459:2	./.	0/1:7,10:31:17:0.588:2	./.	./.	./.	0/1:14,7:32:21:0.333:2
chr9	140611268	rs376810828	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,32:32:84:0.381:2
chr9	140611382	rs144323841	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,6:34:14:0.429:2	./.	./.
chr9	140611436	rs3812497	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,18:30:18:1.00:2	0/1:14,14:30:28:0.500:2	./.	0/1:6,11:29:17:0.647:2	0/1:9,12:29:21:0.571:2
chr9	140638416	rs1129767	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,14:32:23:0.609:2	0/1:23,22:31:45:0.489:2	./.	0/1:10,18:33:28:0.643:2	./.
chr9	140638461	rs1129768	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,16:28:33:0.485:2	0/1:2,36:30:38:0.947:2	0/1:33,32:29:65:0.492:2	0/1:11,26:31:37:0.703:2	0/1:0,41:30:41:1.00:2	0/1:20,18:30:40:0.474:2
chr9	140648742	rs45450992	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,15:33:42:0.357:2	./.	./.	./.	0/1:45,38:32:83:0.458:2
chr9	140669639	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:30:84:0.048:2	./.	./.	./.
chr9	140732888	rs201175632	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,19:31:32:0.594:2	0/1:6,8:31:14:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr9	140777299	rs71238527	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,25:31:141:0.177:2	./.	0/1:88,25:30:114:0.221:2	0/1:102,24:31:126:0.190:2	./.	0/1:86,18:32:104:0.173:2	0/1:73,7:32:80:0.088:2	./.
chr9	140777306	rs4422842	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:53,45:32:98:0.459:2	0/1:25,20:31:45:0.444:2	./.	0/1:87,46:33:133:0.346:2	0/1:52,34:31:87:0.395:2	0/1:61,52:32:113:0.460:2	0/1:71,48:33:119:0.403:2	0/1:77,65:32:142:0.458:2	0/1:55,42:34:97:0.433:2	0/1:52,22:32:74:0.297:2	0/1:54,33:31:87:0.379:2
chr9	140777325	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:31:79:0.051:2	./.	./.
chr9	140865989	rs2229951	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:51,40:32:91:0.440:2	0/1:36,28:31:64:0.438:2	./.	./.	0/1:83,65:31:148:0.439:2	./.	./.	./.	0/1:66,63:32:129:0.488:2	./.	./.
chr9	140881314	rs7034745	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,24:32:65:0.369:2	./.	./.	./.	./.	./.	./.	0/1:30,24:32:54:0.444:2
chr9	141008876	rs2229948	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,20:32:36:0.556:2	0/1:10,4:31:14:0.286:2	./.	0/1:25,17:32:42:0.405:2	0/1:3,21:32:24:0.875:2	0/1:1,34:31:35:0.971:2	0/1:32,14:32:46:0.304:2	0/1:0,54:32:54:1.00:2	0/1:0,46:33:46:1.00:2	0/1:26,21:32:47:0.447:2	0/1:0,43:32:43:1.00:2
chr9	141016262	rs2278973	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,56:29:58:0.966:2	0/1:0,22:29:22:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,47:29:47:1.00:2	0/1:48,31:30:79:0.392:2	0/1:49,36:30:85:0.424:2	0/1:2,64:30:66:0.970:2	0/1:3,63:29:66:0.955:2	0/1:0,75:30:75:1.00:2	0/1:30,20:27:50:0.400:2	0/1:0,43:29:43:1.00:2
chr9	141106704	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:150,21:30:171:0.123:2	0/1:141,14:28:156:0.090:2	./.	./.	./.	./.	./.	./.	./.	0/1:164,21:30:185:0.114:2	./.
chr9	141106719	rs200708228	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:153,22:28:175:0.126:2	0/1:132,19:30:151:0.126:2	0/1:24,5:31:29:0.172:2	0/1:150,25:30:175:0.143:2	0/1:136,59:30:195:0.303:2	0/1:161,34:30:195:0.174:2	0/1:139,59:30:198:0.298:2	0/1:170,29:30:199:0.146:2	0/1:110,62:30:172:0.360:2	0/1:176,21:30:197:0.107:2	0/1:98,59:31:158:0.376:2
chr9	141106745	.	T	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:189,6:29:195:0.031:2	./.	./.	0/1:165,18:30:183:0.098:2	0/1:191,8:29:199:0.040:2	./.	0/1:183,14:27:197:0.071:2	0/1:168,16:28:184:0.087:2	0/1:173,13:32:186:0.070:2	./.	0/1:146,16:27:162:0.099:2
chr9	141107530	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:174,8:28:182:0.044:2	./.	./.	./.	./.	0/1:168,4:34:172:0.023:2	./.	./.
chr9	141107536	rs367832601	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:179,7:32:186:0.038:2	0/1:141,5:30:146:0.034:2	./.	./.	./.	./.	./.	./.
chr9	141107545	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:138,16:31:154:0.104:2	0/1:153,7:29:160:0.044:2	./.	./.	./.	./.	0/1:157,13:28:170:0.076:2	./.	./.	./.	./.
chr9	141107548	rs199863448	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:144,16:30:160:0.100:2	0/1:154,7:30:161:0.043:2	./.	./.	./.	./.	0/1:157,13:27:171:0.076:2	./.	./.	./.	./.
chr9	141109759	rs116196122	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,62:29:189:0.333:2	./.	./.	./.
chr9	141111594	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,5:34:20:0.250:2	./.	./.	./.	./.
chr9	141111600	rs202205020	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,5:31:15:0.333:2	./.	./.	./.	0/1:6,4:34:10:0.400:2	./.
chr9	141111667	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,5:33:35:0.143:2	0/1:15,3:35:18:0.167:2	0/1:11,4:34:15:0.267:2	./.
chr9	141121460	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,7:26:192:0.036:2	./.
chr9	141121501	.	T	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:142,54:32:196:0.276:2	0/1:147,46:32:193:0.238:2	./.	0/1:182,14:32:196:0.071:2	./.	./.	0/1:176,18:32:195:0.093:2	0/1:168,24:32:192:0.125:2	./.	./.	./.
chr9	141121504	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,11:30:123:0.089:2	./.	./.	./.	./.	./.	./.	0/1:183,12:31:195:0.062:2	./.
chr9	141121505	.	A	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:114,11:33:125:0.088:2	0/1:176,16:34:192:0.083:2	0/1:178,16:33:194:0.082:2	0/1:177,17:34:194:0.088:2	0/1:180,17:33:197:0.086:2	./.	0/1:176,20:35:197:0.102:2	0/1:179,15:33:194:0.077:2	0/1:177,15:33:192:0.078:2
chr9	141121527	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:146,22:30:168:0.131:2	0/1:164,26:31:190:0.137:2	./.	0/1:172,18:33:190:0.095:2	0/1:166,27:32:193:0.140:2	0/1:172,21:32:193:0.109:2	0/1:176,14:34:190:0.074:2	./.	0/1:157,27:32:184:0.147:2
chr9	141121531	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:171,12:30:185:0.066:2	0/1:184,12:30:197:0.061:2	0/1:164,7:28:172:0.041:2	./.	0/1:183,9:28:192:0.047:2	0/1:176,16:29:192:0.083:2	0/1:191,5:29:196:0.026:2	./.	0/1:184,10:32:194:0.052:2	./.	./.
chr9	141121537	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:187,4:33:191:0.021:2	0/1:189,8:33:197:0.041:2	0/1:164,10:32:174:0.057:2	0/1:147,45:33:192:0.234:2	0/1:168,28:33:196:0.143:2	0/1:174,18:33:192:0.094:2	0/1:191,8:30:199:0.040:2	0/1:165,29:33:194:0.149:2	0/1:169,28:33:197:0.142:2	./.	0/1:186,6:34:192:0.031:2
chr10	93015	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,4:33:30:0.133:2	0/1:28,3:34:31:0.097:2	./.	./.	./.
chr10	93099	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:34:13:0.308:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	93425	rs41304577	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,4:29:25:0.160:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	93489	rs200311430	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,3:33:22:0.136:2	./.	./.	./.	./.	./.	0/1:23,3:30:26:0.115:2
chr10	93505	rs147114528	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:33:12:0.250:2	./.	./.	0/1:16,3:33:19:0.158:2	./.	./.	./.	./.	0/1:17,6:34:23:0.261:2	./.
chr10	93528	rs200635479	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:29:10:0.300:2	./.	./.	./.	./.	./.	./.	./.
chr10	93559	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:27:16:0.375:2	./.	./.	./.	./.	./.	0/1:18,3:33:21:0.143:2	./.
chr10	93603	rs6560827	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,8:31:27:0.296:2	0/1:6,10:32:17:0.625:2	./.	0/1:12,3:31:15:0.200:2	0/1:5,10:31:15:0.667:2	0/1:27,4:30:31:0.129:2	0/1:11,11:27:22:0.500:2	0/1:38,7:31:45:0.156:2	0/1:5,6:32:11:0.545:2	0/1:22,16:29:38:0.421:2	0/1:11,16:29:27:0.593:2
chr10	93711	rs41305669	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,3:31:27:0.111:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	93714	rs41288743	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,3:33:28:0.107:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	93732	rs148025238	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:45,3:33:48:0.063:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,4:34:37:0.108:2	./.
chr10	93744	rs41298226	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:48,5:27:53:0.094:2	0/1:23,3:32:26:0.115:2	./.	./.	./.	./.	./.	./.	./.	0/1:36,9:31:45:0.200:2	./.
chr10	93778	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:31:66:0.061:2	0/1:39,4:28:43:0.093:2	./.	./.	./.	./.	./.	./.	./.	0/1:63,19:30:82:0.232:2	./.
chr10	93816	rs9329305	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,18:29:119:0.151:2	0/1:56,16:31:72:0.222:2	0/1:6,12:32:18:0.667:2	0/1:91,47:31:138:0.341:2	0/1:17,17:30:34:0.500:2	0/1:27,58:30:85:0.682:2	0/1:42,4:31:46:0.087:2	0/1:84,22:31:106:0.208:2	0/1:33,32:30:65:0.492:2	0/1:74,53:31:127:0.417:2	0/1:49,46:30:95:0.484:2
chr10	93945	rs4431953	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,98:31:186:0.527:2	0/1:37,49:31:86:0.570:2	0/1:16,6:30:22:0.273:2	0/1:28,107:31:136:0.793:2	0/1:71,87:31:158:0.551:2	0/1:128,46:31:174:0.264:2	0/1:80,114:31:194:0.588:2	0/1:137,47:31:184:0.255:2	0/1:5,107:32:112:0.955:2	0/1:82,74:31:156:0.474:2	0/1:72,90:31:162:0.556:2
chr10	93978	rs189892388	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:136,45:31:181:0.249:2	0/1:102,19:32:121:0.157:2	0/1:26,4:33:30:0.133:2	./.	0/1:118,70:31:188:0.372:2	0/1:132,60:31:192:0.313:2	0/1:137,56:31:193:0.290:2	0/1:142,55:31:197:0.279:2	./.	0/1:129,58:31:187:0.310:2	0/1:129,60:32:189:0.317:2
chr10	93987	rs61839057	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:166,20:28:186:0.108:2	0/1:115,13:30:128:0.102:2	./.	./.	./.	./.	./.	./.	./.	0/1:169,20:28:189:0.106:2	./.
chr10	93994	rs61839058	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:166,19:27:185:0.103:2	0/1:123,12:25:135:0.089:2	./.	./.	./.	./.	./.	./.	./.	0/1:171,18:28:190:0.095:2	./.
chr10	94018	rs9329307	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:160,10:27:170:0.059:2	./.	0/1:31,5:30:36:0.139:2	0/1:175,7:27:182:0.038:2	./.	./.	./.	0/1:170,6:29:176:0.034:2	./.	./.	0/1:166,6:25:173:0.035:2
chr10	94025	rs143154682	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:142,26:27:168:0.155:2	0/1:106,18:28:124:0.145:2	./.	./.	./.	./.	./.	./.	./.	0/1:153,28:31:181:0.155:2	./.
chr10	94026	rs10904032	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:80,79:31:159:0.497:2	0/1:50,70:31:120:0.583:2	./.	0/1:107,53:32:160:0.331:2	0/1:127,44:31:171:0.257:2	./.	0/1:63,95:32:158:0.601:2	0/1:129,39:32:168:0.232:2	0/1:92,71:32:163:0.436:2	0/1:133,45:32:179:0.253:2	0/1:113,55:31:168:0.327:2
chr10	94607	rs150100936	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,3:31:32:0.094:2	./.	./.	./.	./.	./.
chr10	294953	rs1017361	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:33:45:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,52:32:52:1.00:2	0/1:20,41:33:61:0.672:2	0/1:0,41:33:41:1.00:2	0/1:0,62:33:62:1.00:2	0/1:0,76:34:76:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,119:33:119:1.00:2
chr10	323283	rs3740304	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:30:4:0.750:2	./.	0/1:15,17:27:33:0.531:2	0/1:0,45:28:45:1.00:2	./.	./.	./.	./.	0/1:16,17:27:33:0.515:2
chr10	332199	rs2288680	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,10:31:19:0.526:2	./.	./.	./.	./.	./.	0/1:13,10:31:23:0.435:2	./.
chr10	332290	rs17158977	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:33:49:0.082:2	./.	./.	./.
chr10	395299	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,10:32:23:0.435:2	./.
chr10	395368	rs79727010	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,27:31:52:0.519:2	./.	./.	./.	./.	./.
chr10	429977	rs10904083	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,28:30:49:0.583:2	0/1:15,18:31:33:0.545:2	./.	./.	0/1:39,62:28:102:0.614:2	0/1:0,77:29:79:1.00:2	./.	0/1:42,69:29:112:0.622:2	./.	./.	0/1:33,41:31:76:0.554:2
chr10	430496	rs145500543	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,29:30:69:0.433:2	./.	./.	./.	./.	./.
chr10	435966	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:191,4:32:197:0.021:2	./.	./.	./.	./.	./.	./.
chr10	445061	rs6560837	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:29:29:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,46:29:48:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,66:28:67:1.00:2	0/1:0,44:29:44:1.00:2	0/1:0,48:29:48:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,26:29:26:1.00:2	0/1:0,29:29:30:1.00:2
chr10	459940	rs4881274	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,13:29:24:0.542:2	0/1:16,13:31:29:0.448:2	0/1:0,7:31:7:1.00:2	0/1:20,28:30:48:0.583:2	0/1:16,11:30:27:0.407:2	0/1:0,44:30:44:1.00:2	./.	0/1:17,19:30:36:0.528:2	0/1:18,10:29:28:0.357:2	0/1:7,21:30:28:0.750:2	0/1:15,20:30:35:0.571:2
chr10	530775	rs11252681	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,10:31:18:0.556:2	./.	./.	./.	./.	./.
chr10	530779	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,7:32:17:0.412:2	./.
chr10	696237	rs10904535	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,82:31:82:1.00:2	0/1:41,37:31:78:0.474:2	0/1:3,43:32:46:0.935:2	0/1:1,94:31:95:0.989:2	0/1:0,64:33:64:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,30:31:30:1.00:2
chr10	1034412	rs12772979	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,27:31:45:0.600:2	0/1:14,11:31:25:0.440:2	0/1:1,5:30:6:0.833:2	0/1:32,25:31:57:0.439:2	0/1:42,20:29:62:0.323:2	./.	./.	0/1:47,39:29:86:0.453:2	0/1:22,22:31:44:0.500:2	./.	0/1:19,24:29:43:0.558:2
chr10	1046712	rs2306409	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,57:32:129:0.442:2	0/1:77,98:32:176:0.560:2	0/1:67,65:32:132:0.492:2	0/1:95,90:32:185:0.486:2	./.	./.	0/1:0,101:32:101:1.00:2	0/1:60,49:32:109:0.450:2
chr10	1065710	rs1044261	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,67:31:150:0.447:2	./.	./.	./.	./.	./.	./.	./.
chr10	1068639	rs13377037	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,23:32:65:0.354:2	./.	./.	./.	./.	./.	./.	./.
chr10	1088692	rs118002486	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,30:31:85:0.353:2
chr10	1090074	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:33:133:0.030:2
chr10	1132215	rs11250255	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,37:31:101:0.366:2	./.	./.	./.	./.
chr10	1142208	rs10794716	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,84:29:84:1.00:2	0/1:0,59:29:59:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,122:29:122:1.00:2	0/1:0,97:29:97:1.00:2	0/1:0,112:29:112:1.00:2	0/1:0,157:29:157:1.00:2	0/1:0,134:29:134:1.00:2	0/1:0,95:30:95:1.00:2	0/1:0,77:29:77:1.00:2	0/1:0,111:29:111:1.00:2
chr10	1230968	rs2271275	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,21:30:38:0.553:2	0/1:4,3:31:7:0.429:2	./.	0/1:12,14:31:26:0.538:2	0/1:10,9:31:19:0.474:2	0/1:0,57:30:57:1.00:2	0/1:0,21:28:21:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,17:31:17:1.00:2	0/1:3,12:30:15:0.800:2
chr10	1246189	rs78822513	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,17:30:36:0.472:2	./.	./.	./.	./.	./.
chr10	1279723	rs141751719	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:33:179:0.022:2	./.	./.	./.
chr10	1421326	rs3793733	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,76:31:163:0.469:2	./.	./.	./.
chr10	1577146	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,47:31:84:0.560:2
chr10	1577876	rs11250595	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:26,35:30:61:0.574:2	0/1:11,12:31:23:0.522:2	./.	./.	0/1:33,22:30:55:0.400:2	0/1:30,35:30:65:0.538:2	./.	0/1:51,31:31:82:0.378:2	./.	./.	0/1:0,73:30:73:1.00:2
chr10	3143643	rs4881080	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:28:31:1.00:2	0/1:0,19:28:19:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,35:29:35:1.00:2	0/1:0,32:29:32:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,23:29:23:1.00:2	0/1:0,16:32:16:1.00:2
chr10	3143667	rs11542777	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,30:30:66:0.455:2	./.	./.	./.	./.	./.	./.
chr10	3143673	rs41288715	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,19:28:35:0.543:2	./.
chr10	3146071	rs140594448	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,50:30:109:0.459:2	./.	./.	./.	./.	./.
chr10	3147675	rs148314524	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,5:29:180:0.028:2	./.	./.	./.	./.
chr10	3149402	rs10903967	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,26:29:26:1.00:2	0/1:0,12:29:12:1.00:2	./.	0/1:33,12:29:45:0.267:2	0/1:1,14:30:15:0.933:2	0/1:5,15:28:20:0.750:2	0/1:11,8:29:19:0.421:2	0/1:21,17:30:38:0.447:2	0/1:17,14:30:31:0.452:2	0/1:1,25:30:26:0.962:2	./.
chr10	3150898	rs11251721	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,19:31:19:1.00:2	./.	./.	./.	0/1:93,102:31:195:0.523:2	0/1:88,83:31:171:0.485:2	0/1:68,73:32:141:0.518:2	./.	0/1:41,61:31:102:0.598:2
chr10	3150973	rs1132173	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:62,61:32:123:0.496:2	0/1:47,31:32:78:0.397:2	./.	./.	0/1:100,60:32:160:0.375:2	0/1:83,78:31:161:0.484:2	0/1:99,74:31:173:0.428:2	./.	./.	0/1:83,85:32:168:0.506:2	./.
chr10	3154461	rs2306302	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,54:32:117:0.466:2	./.	./.	./.	./.	./.
chr10	3155353	rs3816699	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	0/1:26,23:30:49:0.469:2	0/1:28,29:30:57:0.509:2	0/1:21,25:31:46:0.543:2	./.	0/1:26,7:26:33:0.212:2
chr10	3155620	rs1052309	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,46:29:46:1.00:2	0/1:0,33:29:33:1.00:2	./.	0/1:60,22:29:82:0.268:2	0/1:0,64:29:64:1.00:2	0/1:48,29:29:77:0.377:2	./.	0/1:47,24:29:71:0.338:2	0/1:35,28:31:63:0.444:2	0/1:0,33:30:34:1.00:2	0/1:22,5:21:27:0.185:2
chr10	3155698	rs4881086	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:30:4:1.00:2	0/1:18,20:31:38:0.526:2	./.	0/1:12,19:30:32:0.613:2	0/1:32,19:31:51:0.373:2	0/1:8,22:31:30:0.733:2	0/1:10,15:32:25:0.600:2	./.	0/1:11,10:30:21:0.476:2
chr10	3159006	rs61755068	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:31:14:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	3172115	rs11542778	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,22:31:41:0.537:2	0/1:4,8:32:12:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	3172121	rs1052333	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:31:5:1.00:2	./.	0/1:14,20:32:34:0.588:2	0/1:21,28:31:49:0.571:2	./.	./.	0/1:21,11:34:32:0.344:2	0/1:9,34:31:43:0.791:2	./.
chr10	3172145	rs1052337	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,14:31:34:0.412:2	./.	./.
chr10	3179703	rs4881107	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:10,14:32:24:0.583:2	0/1:11,4:32:15:0.267:2	0/1:0,4:30:4:1.00:2	./.	0/1:10,5:30:15:0.333:2	0/1:22,14:30:36:0.389:2	./.	0/1:23,5:27:29:0.179:2	0/1:0,17:31:17:1.00:2	0/1:10,7:31:17:0.412:2	./.
chr10	3179708	rs4881108	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:10,13:33:23:0.565:2	0/1:11,4:32:15:0.267:2	0/1:0,4:30:4:1.00:2	./.	0/1:13,6:30:19:0.316:2	0/1:21,13:32:34:0.382:2	./.	0/1:29,7:32:36:0.194:2	0/1:0,18:32:18:1.00:2	0/1:13,7:33:20:0.350:2	./.
chr10	3179738	rs79334726	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,24:33:39:0.615:2	./.	0/1:12,26:31:38:0.684:2	./.	./.	./.	./.	./.
chr10	3180227	rs6901	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,38:30:38:1.00:2	0/1:0,37:30:37:1.00:2	./.	0/1:49,46:31:95:0.484:2	0/1:1,40:30:41:0.976:2	0/1:26,52:31:78:0.667:2	0/1:0,51:31:51:1.00:2	0/1:0,97:30:97:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,65:30:65:1.00:2	0/1:34,47:31:81:0.580:2
chr10	3180288	rs35779348	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,31:33:64:0.484:2	./.	./.
chr10	3180298	rs10175	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,54:31:113:0.478:2	0/1:40,28:30:68:0.412:2	0/1:74,26:30:100:0.260:2	./.	0/1:51,52:31:103:0.505:2	0/1:26,30:30:56:0.536:2	./.	./.
chr10	3180316	rs11414	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,25:30:49:0.510:2	0/1:17,14:31:31:0.452:2	./.	0/1:45,43:31:88:0.489:2	0/1:34,22:31:56:0.393:2	0/1:0,80:31:80:1.00:2	./.	0/1:37,44:32:81:0.543:2	0/1:0,35:31:35:1.00:2	0/1:37,31:29:68:0.456:2	./.
chr10	3181003	rs2279217	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,100:33:100:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,13:32:13:1.00:2	0/1:65,72:33:137:0.526:2	0/1:1,129:33:130:0.992:2	0/1:55,52:33:107:0.486:2	0/1:1,95:32:96:0.990:2	0/1:0,100:33:100:1.00:2	0/1:0,91:33:91:1.00:2	0/1:0,81:33:81:1.00:2	0/1:62,38:32:100:0.380:2
chr10	3181110	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:32:183:0.022:2	./.	./.	./.	./.	./.
chr10	3181126	rs17849904	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,66:32:159:0.415:2	./.
chr10	3189380	rs3740607	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,66:32:66:1.00:2	0/1:0,36:31:36:1.00:2	./.	0/1:31,57:32:88:0.648:2	0/1:0,74:31:75:1.00:2	./.	0/1:5,60:32:65:0.923:2	0/1:1,88:31:89:0.989:2	0/1:43,65:32:109:0.602:2	0/1:0,65:32:66:1.00:2	0/1:33,43:30:76:0.566:2
chr10	3190166	rs59486411	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,17:32:57:0.298:2	./.	./.	0/1:24,21:32:45:0.467:2	./.	./.
chr10	3190265	rs4881111	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:33:66:1.00:2	0/1:0,40:32:40:1.00:2	0/1:9,5:34:14:0.357:2	0/1:27,29:32:56:0.518:2	0/1:1,62:32:63:0.984:2	./.	0/1:0,65:32:65:1.00:2	0/1:1,84:32:85:0.988:2	0/1:35,40:34:75:0.533:2	0/1:0,53:32:53:1.00:2	0/1:36,31:33:67:0.463:2
chr10	3191823	rs2388556	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.	./.	0/1:33,31:31:64:0.484:2	./.	./.	0/1:36,25:33:61:0.410:2	./.	./.
chr10	3191830	rs41305673	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,33:32:67:0.493:2	./.	./.	./.	./.	./.	./.	./.
chr10	3197871	rs201227300	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,76:31:176:0.432:2	./.	./.	./.	./.
chr10	3200292	rs3182535	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,57:32:59:0.983:2	0/1:0,32:31:32:1.00:2	0/1:0,8:29:8:1.00:2	0/1:57,31:31:88:0.352:2	0/1:0,61:30:61:1.00:2	0/1:40,30:30:70:0.429:2	0/1:0,69:30:69:1.00:2	0/1:0,73:31:73:1.00:2	0/1:2,72:31:74:0.973:2	0/1:0,44:30:44:1.00:2	0/1:34,31:31:65:0.477:2
chr10	3202065	rs4242746	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,31:31:60:0.517:2	0/1:23,23:30:46:0.500:2	0/1:0,10:30:10:1.00:2	0/1:58,40:30:98:0.408:2	0/1:0,47:30:47:1.00:2	0/1:70,25:31:95:0.263:2	0/1:2,57:30:59:0.966:2	0/1:63,29:29:92:0.315:2	0/1:68,45:30:113:0.398:2	0/1:0,51:30:51:1.00:2	0/1:81,42:30:124:0.341:2
chr10	3206027	rs4609511	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,20:29:36:0.556:2	0/1:19,14:30:33:0.424:2	0/1:0,3:32:3:1.00:2	0/1:0,58:30:58:1.00:2	0/1:0,42:29:42:1.00:2	0/1:16,18:30:34:0.529:2	0/1:0,51:30:51:1.00:2	0/1:31,33:29:64:0.516:2	0/1:30,23:31:53:0.434:2	0/1:0,31:31:31:1.00:2	0/1:23,25:30:48:0.521:2
chr10	3207632	rs3814596	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,17:32:17:1.00:2	./.	./.	0/1:38,35:32:73:0.479:2	./.	./.	0/1:49,36:33:85:0.424:2	./.	./.
chr10	3207705	rs9423502	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,15:32:25:0.600:2	./.	./.	./.	./.	./.	./.
chr10	3208512	rs1127047	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,7:32:20:0.350:2	./.	./.	./.	./.	./.	./.
chr10	3208557	rs12359035	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,9:32:25:0.360:2	0/1:11,9:32:20:0.450:2	0/1:0,5:32:5:1.00:2	0/1:1,26:31:27:0.963:2	0/1:1,12:32:13:0.923:2	0/1:20,15:31:35:0.429:2	0/1:0,16:29:16:1.00:2	0/1:21,14:31:35:0.400:2	0/1:17,14:31:31:0.452:2	0/1:0,23:31:23:1.00:2	0/1:15,14:29:29:0.483:2
chr10	4875551	rs200006258	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:111,10:19:121:0.083:2	./.	./.	0/1:143,17:14:160:0.106:2	./.	0/1:143,18:14:162:0.112:2	0/1:144,19:13:163:0.117:2	0/1:147,26:13:174:0.150:2	./.	./.	0/1:120,11:15:131:0.084:2
chr10	4879748	rs76596595	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,10:30:32:0.313:2	./.	./.
chr10	4887988	rs2924267	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,8:32:14:0.571:2	0/1:35,40:32:75:0.533:2	0/1:74,37:32:111:0.333:2	./.	./.	0/1:69,43:32:112:0.384:2	0/1:46,25:33:71:0.352:2	./.	./.
chr10	4889403	rs12240276	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,34:33:79:0.430:2	./.	./.	0/1:74,48:33:122:0.393:2	./.
chr10	5008232	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:186,11:31:197:0.056:2	./.	./.	./.	./.	./.	./.
chr10	5009193	rs11548049	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:31:148:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	5009208	rs200733341	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,12:31:183:0.066:2	./.	0/1:176,9:31:185:0.049:2	0/1:182,11:31:193:0.057:2	./.	./.
chr10	5010572	rs1138600	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,153:30:196:0.781:2	0/1:48,144:30:192:0.750:2	0/1:38,119:29:157:0.758:2	0/1:53,145:31:198:0.732:2	0/1:104,93:30:197:0.472:2	0/1:99,96:30:195:0.492:2	0/1:54,146:30:200:0.730:2	0/1:114,84:30:198:0.424:2	0/1:90,107:31:197:0.543:2	0/1:108,89:31:197:0.452:2	0/1:89,106:30:195:0.544:2
chr10	5011075	rs139588200	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,5:30:156:0.032:2	./.	./.	./.	./.
chr10	5014488	rs377035250	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,14:29:143:0.098:2	0/1:124,16:30:140:0.114:2	./.	0/1:124,4:31:128:0.031:2	./.	./.	0/1:134,17:31:152:0.113:2	./.
chr10	5014878	rs377451501	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:186,7:34:194:0.036:2	./.	./.	./.	0/1:189,7:33:196:0.036:2	0/1:189,5:27:194:0.026:2	0/1:188,5:33:193:0.026:2	./.
chr10	5014935	rs142200840	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,84:32:194:0.433:2	./.	./.	./.
chr10	5018132	rs201420087	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:110,48:33:158:0.304:2	0/1:119,50:33:169:0.296:2	0/1:69,36:33:105:0.343:2	0/1:57,98:33:155:0.632:2	0/1:123,67:32:190:0.353:2	0/1:168,13:33:181:0.072:2	0/1:134,36:33:170:0.212:2	./.	./.	0/1:107,68:32:175:0.389:2	0/1:155,15:31:170:0.088:2
chr10	5019959	rs8483	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:112,76:30:188:0.404:2	0/1:127,64:30:191:0.335:2	./.	0/1:132,59:30:191:0.309:2	0/1:132,58:30:191:0.305:2	./.	./.	./.	./.	0/1:133,64:30:197:0.325:2	./.
chr10	5032163	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:163,21:30:184:0.114:2	0/1:170,25:30:196:0.128:2	./.	0/1:170,22:29:192:0.115:2	0/1:176,18:29:194:0.093:2	./.	./.	./.	./.	0/1:168,25:30:193:0.130:2	./.
chr10	5032241	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,4:34:194:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr10	5034016	rs200698968	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:123,49:33:172:0.285:2	0/1:108,55:33:163:0.337:2	0/1:78,22:32:100:0.220:2	0/1:58,117:33:175:0.669:2	0/1:124,60:33:184:0.326:2	0/1:164,25:33:189:0.132:2	0/1:123,58:33:181:0.320:2	./.	./.	0/1:104,79:33:183:0.432:2	0/1:166,25:34:191:0.131:2
chr10	5040878	rs148364394	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:178,5:31:183:0.027:2	./.	./.	./.	./.	./.	./.
chr10	5040936	rs144450879	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:118,5:27:123:0.041:2	./.	./.	./.	./.	./.	./.
chr10	5041398	rs56259037	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,132:31:194:0.680:2	0/1:58,133:30:191:0.696:2	0/1:65,130:30:196:0.667:2	0/1:65,129:31:194:0.665:2	0/1:119,77:30:196:0.393:2	0/1:112,84:30:197:0.429:2	0/1:65,133:31:198:0.672:2	0/1:133,66:30:199:0.332:2	0/1:126,70:31:196:0.357:2	0/1:120,79:30:199:0.397:2	0/1:113,83:30:196:0.423:2
chr10	5042664	rs2275929	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:31:11:0.636:2	./.	0/1:28,16:31:44:0.364:2	0/1:33,34:30:67:0.507:2	0/1:36,29:30:65:0.446:2	./.	./.	0/1:46,38:31:84:0.452:2	0/1:78,57:32:136:0.422:2
chr10	5042784	rs13945	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,38:31:106:0.358:2	./.	0/1:94,62:31:156:0.397:2	0/1:112,75:32:187:0.401:2	./.	./.
chr10	5043747	rs142672563	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,50:32:152:0.333:2	./.	./.	./.	./.	./.	./.
chr10	5136651	rs12529	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,25:34:62:0.403:2	0/1:15,13:32:28:0.464:2	0/1:5,4:33:9:0.444:2	0/1:1,76:33:77:0.987:2	0/1:23,39:33:62:0.629:2	0/1:37,38:32:75:0.507:2	./.	0/1:33,62:33:95:0.653:2	0/1:0,86:34:86:1.00:2	0/1:32,60:34:92:0.652:2	0/1:37,22:33:59:0.373:2
chr10	5138607	rs7741	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,31:32:73:0.425:2	0/1:31,25:32:56:0.446:2	./.	./.	0/1:37,25:31:62:0.403:2	./.
chr10	5138747	rs11551177	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,15:32:29:0.517:2	./.	0/1:107,86:32:193:0.446:2	./.	0/1:103,81:32:184:0.440:2	./.	./.	./.	./.
chr10	5139685	rs12387	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:98,95:32:193:0.492:2	0/1:65,41:33:106:0.387:2	0/1:0,23:31:23:1.00:2	0/1:0,185:32:185:1.00:2	0/1:1,98:31:99:0.990:2	0/1:0,148:31:148:1.00:2	0/1:0,111:31:111:1.00:2	0/1:96,91:31:187:0.487:2	0/1:0,166:33:166:1.00:2	0/1:0,166:32:166:1.00:2	0/1:86,105:32:191:0.550:2
chr10	5141609	rs34186955	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,43:30:102:0.422:2	./.	./.	./.	./.	./.	./.
chr10	5144734	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:34:188:0.021:2
chr10	5144836	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,12:32:196:0.061:2	./.	./.	./.
chr10	5149649	rs34320249	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:34:7:0.571:2	./.	0/1:28,10:33:38:0.263:2	./.	0/1:14,18:33:32:0.563:2	./.	./.	./.	./.
chr10	5149703	rs3209896	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:38,15:32:53:0.283:2	0/1:15,10:33:25:0.400:2	./.	0/1:40,34:32:74:0.459:2	./.	0/1:33,19:32:52:0.365:2	0/1:19,9:33:28:0.321:2	0/1:17,21:32:38:0.553:2	0/1:0,41:33:41:1.00:2	0/1:0,61:32:61:1.00:2	./.
chr10	5197881	rs1781931	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,54:32:109:0.495:2	0/1:36,26:31:62:0.419:2	0/1:5,9:31:14:0.643:2	0/1:62,36:33:98:0.367:2	./.	./.	./.	0/1:86,61:32:147:0.415:2	0/1:3,119:34:122:0.975:2	0/1:48,46:32:94:0.489:2	./.
chr10	5199934	rs1781935	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,36:32:78:0.462:2	0/1:16,20:33:36:0.556:2	0/1:4,10:33:14:0.714:2	0/1:0,57:33:58:1.00:2	0/1:44,40:31:84:0.476:2	0/1:70,26:32:96:0.271:2	./.	0/1:63,37:32:100:0.370:2	0/1:1,89:33:90:0.989:2	0/1:52,37:32:89:0.416:2	0/1:48,39:32:87:0.448:2
chr10	5200861	rs2020172	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,34:31:62:0.548:2	0/1:18,20:31:38:0.526:2	./.	./.	0/1:35,25:31:60:0.417:2	./.
chr10	5202060	rs1781940	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:150,43:29:194:0.223:2	0/1:108,27:32:135:0.200:2	0/1:7,15:30:22:0.682:2	0/1:3,153:31:156:0.981:2	0/1:46,68:31:115:0.596:2	0/1:30,56:31:86:0.651:2	./.	0/1:126,69:30:196:0.354:2	0/1:0,135:31:135:1.00:2	0/1:68,52:30:120:0.433:2	0/1:140,54:31:195:0.278:2
chr10	5202104	rs2801889	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:157,33:32:190:0.174:2	0/1:166,17:32:183:0.093:2	0/1:0,12:31:12:1.00:2	0/1:2,103:32:105:0.981:2	0/1:0,82:32:82:1.00:2	0/1:1,60:31:61:0.984:2	0/1:0,48:31:48:1.00:2	0/1:1,189:32:190:0.995:2	0/1:0,95:32:95:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,180:33:181:1.00:2
chr10	5202145	rs111558200	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:170,6:31:176:0.034:2	0/1:176,6:32:182:0.033:2	0/1:3,5:31:8:0.625:2	0/1:20,38:30:58:0.655:2	0/1:23,22:30:45:0.489:2	0/1:30,11:29:41:0.268:2	./.	./.	0/1:40,23:31:63:0.365:2	0/1:40,22:31:63:0.355:2	0/1:161,5:30:167:0.030:2
chr10	5203748	rs3750573	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:42,38:33:80:0.475:2	0/1:25,18:31:43:0.419:2	0/1:5,8:34:13:0.615:2	./.	0/1:24,27:32:51:0.529:2	./.	0/1:27,38:33:66:0.585:2	0/1:47,41:33:88:0.466:2	./.	./.	0/1:56,39:33:95:0.411:2
chr10	5203772	rs77303730	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,26:32:66:0.394:2	./.	./.	0/1:54,30:33:84:0.357:2
chr10	5203864	rs11253021	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,34:32:52:0.654:2	0/1:28,20:33:48:0.417:2	./.	./.	0/1:25,24:32:49:0.490:2	./.
chr10	5204928	rs7097295	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,29:31:73:0.397:2	0/1:17,27:31:44:0.614:2	./.	./.	0/1:33,35:32:68:0.515:2	./.
chr10	5242164	rs17306779	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,105:32:108:0.972:2	0/1:0,66:32:66:1.00:2	0/1:7,12:31:19:0.632:2	0/1:89,58:33:147:0.395:2	./.	./.	./.	0/1:1,132:32:133:0.992:2	./.	./.	0/1:78,64:32:142:0.451:2
chr10	5247784	rs3829125	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:46,101:32:147:0.687:2	0/1:26,67:32:93:0.720:2	./.	./.	./.	./.	./.	0/1:32,60:32:92:0.652:2	./.	./.	0/1:49,84:32:134:0.632:2
chr10	5255025	rs4880718	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:29:96:1.00:2	0/1:0,56:29:56:1.00:2	0/1:0,18:28:18:1.00:2	0/1:0,130:29:130:1.00:2	0/1:0,90:29:90:1.00:2	0/1:0,143:29:144:1.00:2	0/1:0,154:29:154:1.00:2	0/1:0,151:29:151:1.00:2	0/1:0,144:29:144:1.00:2	0/1:0,117:28:117:1.00:2	0/1:0,160:29:160:1.00:2
chr10	5260682	rs17134592	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:61,58:33:119:0.487:2	0/1:39,24:32:63:0.381:2	./.	./.	./.	./.	./.	0/1:89,91:32:180:0.506:2	./.	./.	0/1:70,73:33:143:0.510:2
chr10	5415954	rs10904481	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:27,31:31:58:0.534:2	0/1:9,13:30:22:0.591:2	./.	./.	0/1:27,18:28:45:0.400:2	./.	0/1:23,23:30:46:0.500:2	./.	./.	0/1:27,26:32:53:0.491:2	./.
chr10	5435918	rs7097775	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,105:32:105:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,18:32:18:1.00:2	0/1:2,139:32:141:0.986:2	0/1:117,81:32:198:0.409:2	./.	0/1:95,96:32:191:0.503:2	0/1:99,87:32:186:0.468:2	0/1:0,138:33:138:1.00:2	0/1:80,57:32:137:0.416:2	0/1:80,57:32:137:0.416:2
chr10	5435975	rs142943186	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,67:31:148:0.453:2	./.	./.	./.	./.	./.
chr10	5436073	rs34080891	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,45:33:99:0.455:2	0/1:25,24:32:49:0.490:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	5436260	rs7910290	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:32:87:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,18:30:18:1.00:2	0/1:1,113:31:114:0.991:2	0/1:73,50:30:123:0.407:2	./.	0/1:70,52:31:122:0.426:2	0/1:63,61:31:125:0.492:2	0/1:0,113:31:113:1.00:2	0/1:56,56:31:112:0.500:2	0/1:72,39:31:111:0.351:2
chr10	5437365	rs11253156	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:33:65:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,97:32:97:1.00:2	0/1:69,61:31:130:0.469:2	./.	0/1:72,68:32:141:0.486:2	0/1:57,74:32:131:0.565:2	0/1:0,103:33:103:1.00:2	0/1:42,37:32:79:0.468:2	0/1:44,40:32:84:0.476:2
chr10	5446794	rs7477466	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:31:40:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,48:32:48:1.00:2	0/1:22,24:31:46:0.522:2	./.	0/1:34,38:32:72:0.528:2	0/1:30,46:31:76:0.605:2	0/1:1,45:32:46:0.978:2	0/1:15,17:31:32:0.531:2	0/1:32,39:32:71:0.549:2
chr10	5471200	rs4604777	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:33:35:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,3:34:3:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,56:32:56:1.00:2
chr10	5495218	rs4567355	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:32:91:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,111:31:111:1.00:2	0/1:2,86:32:88:0.977:2	0/1:1,138:32:139:0.993:2	0/1:0,113:32:113:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,104:32:104:1.00:2
chr10	5541181	rs10904516	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,7:33:17:0.412:2	0/1:27,13:31:40:0.325:2	./.	0/1:15,11:31:26:0.423:2	./.	./.	./.
chr10	5541183	rs10904517	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,7:31:18:0.389:2	0/1:27,13:29:40:0.325:2	./.	0/1:16,11:31:27:0.407:2	./.	./.	./.
chr10	5541230	rs11546426	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:27,15:32:42:0.357:2	0/1:23,14:31:37:0.378:2	./.	./.	0/1:25,15:30:40:0.375:2	0/1:58,30:31:88:0.341:2	0/1:22,32:30:54:0.593:2	0/1:35,38:30:73:0.521:2	./.	./.	./.
chr10	5567366	rs1142825	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,47:30:48:0.979:2	0/1:0,30:31:30:1.00:2	0/1:0,5:30:5:1.00:2	0/1:24,41:29:65:0.631:2	0/1:19,26:29:45:0.578:2	./.	./.	./.	./.	./.	0/1:6,11:28:17:0.647:2
chr10	5567695	rs4242797	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:31:62:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,84:31:84:1.00:2	0/1:0,156:31:156:1.00:2	0/1:1,109:31:110:0.991:2	0/1:0,134:31:134:1.00:2	0/1:1,123:31:124:0.992:2	0/1:0,89:32:89:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,55:31:55:1.00:2
chr10	5567864	rs4589189	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,5:30:13:0.385:2	./.	0/1:0,8:30:8:1.00:2	0/1:14,6:32:20:0.300:2	./.	0/1:6,8:32:14:0.571:2	0/1:9,8:29:17:0.471:2
chr10	5567914	rs4589188	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,4:31:15:0.267:2	./.	0/1:1,10:31:11:0.909:2	0/1:8,10:30:18:0.556:2	./.	0/1:7,5:31:12:0.417:2	0/1:6,11:30:17:0.647:2
chr10	5567967	rs1131482	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,31:28:31:1.00:2	0/1:0,13:31:13:1.00:2	./.	0/1:12,8:30:20:0.400:2	0/1:6,23:29:29:0.793:2	./.	./.	./.	./.	./.	0/1:21,14:29:35:0.400:2
chr10	5762874	rs76832615	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,53:32:125:0.424:2
chr10	5781628	rs2254067	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,25:30:45:0.556:2	0/1:15,13:32:28:0.464:2	0/1:0,11:32:11:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,47:31:47:1.00:2	0/1:19,14:32:33:0.424:2	0/1:0,46:31:46:1.00:2	0/1:38,39:31:77:0.506:2	0/1:0,58:32:58:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,62:32:62:1.00:2
chr10	5781969	rs2797486	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,13:33:25:0.520:2	0/1:12,9:33:21:0.429:2	0/1:1,4:33:5:0.800:2	0/1:0,21:32:21:1.00:2	0/1:0,22:33:22:1.00:2	0/1:19,9:31:28:0.321:2	0/1:0,28:33:28:1.00:2	0/1:22,15:33:37:0.405:2	0/1:0,36:34:36:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,45:33:45:1.00:2
chr10	5782022	rs4748636	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,14:31:39:0.359:2
chr10	5784151	rs45575338	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,36:32:91:0.396:2	./.	./.	./.	0/1:77,59:32:136:0.434:2
chr10	5788608	rs2797491	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,34:33:74:0.459:2	0/1:17,18:32:35:0.514:2	0/1:0,14:33:14:1.00:2	0/1:0,86:33:86:1.00:2	0/1:0,50:32:51:1.00:2	0/1:44,21:31:65:0.323:2	0/1:0,63:32:63:1.00:2	0/1:45,36:32:81:0.444:2	0/1:0,75:33:75:1.00:2	0/1:0,56:32:56:1.00:2	0/1:1,67:33:68:0.985:2
chr10	5789652	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:31:86:0.047:2	./.	./.	./.	./.
chr10	5790420	rs2669142	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:29:73:1.00:2	0/1:0,35:27:35:1.00:2	0/1:0,4:29:4:1.00:2	0/1:2,84:28:86:0.977:2	0/1:0,71:28:71:1.00:2	0/1:0,81:28:81:1.00:2	0/1:0,89:28:89:1.00:2	0/1:0,75:28:75:1.00:2	0/1:0,84:29:84:1.00:2	0/1:0,65:28:65:1.00:2	0/1:0,97:27:97:1.00:2
chr10	5799613	rs2275774	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,63:32:134:0.470:2	./.	./.	./.	./.
chr10	5804531	rs2797501	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,18:32:68:0.265:2	0/1:13,11:31:24:0.458:2	0/1:0,8:31:8:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,23:30:23:1.00:2	0/1:44,12:30:56:0.214:2	0/1:1,23:31:24:0.958:2	0/1:38,19:31:57:0.333:2	0/1:0,57:32:57:1.00:2	0/1:0,33:31:33:1.00:2	0/1:1,81:32:82:0.988:2
chr10	5808086	rs1129614	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,49:31:132:0.371:2	./.	./.	./.	0/1:92,63:32:155:0.406:2
chr10	5827901	rs17403348	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,42:31:80:0.525:2	0/1:14,31:30:45:0.689:2	./.
chr10	5853817	rs1567707	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:24,17:33:41:0.415:2	0/1:15,13:33:28:0.464:2	./.	./.	./.	./.	0/1:8,7:32:15:0.467:2	0/1:8,12:32:20:0.600:2	./.	./.	0/1:38,24:33:63:0.387:2
chr10	5855225	rs3736460	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:8,17:32:25:0.680:2	0/1:4,8:32:12:0.667:2	./.	./.	./.	./.	./.	0/1:14,34:32:48:0.708:2	./.	./.	./.
chr10	5920121	rs1052420	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,47:29:48:0.979:2	0/1:0,30:29:30:1.00:2	0/1:0,10:28:10:1.00:2	0/1:0,85:29:85:1.00:2	0/1:44,43:29:87:0.494:2	0/1:0,60:28:60:1.00:2	0/1:64,44:29:108:0.407:2	0/1:60,62:29:122:0.508:2	0/1:0,93:30:93:1.00:2	0/1:0,56:30:56:1.00:2	0/1:0,75:29:75:1.00:2
chr10	5924996	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:31:70:0.057:2	./.	./.	./.	./.
chr10	5925047	rs61729847	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,34:31:85:0.400:2	./.	./.	./.	./.	./.	./.
chr10	5925971	rs631947	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:32:20:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,38:30:38:1.00:2	0/1:41,29:31:70:0.414:2	0/1:0,49:30:49:1.00:2	0/1:35,32:31:67:0.478:2	0/1:29,37:31:66:0.561:2	0/1:0,37:31:37:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,45:32:45:1.00:2
chr10	5936425	rs12781700	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:30:7:0.714:2	./.	./.	0/1:39,41:29:80:0.513:2	./.	0/1:40,36:30:76:0.474:2	./.	0/1:40,42:28:82:0.512:2	0/1:36,42:29:78:0.538:2
chr10	5979222	rs34731660	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,53:29:121:0.438:2	./.	./.	./.	./.	./.	./.
chr10	5995112	rs41290325	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,46:32:115:0.400:2
chr10	6001696	rs3136618	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:6,8:33:14:0.571:2	0/1:7,7:32:14:0.500:2	./.	./.	0/1:18,19:32:37:0.514:2	./.	./.	./.	./.	0/1:11,7:34:18:0.389:2	0/1:12,10:32:22:0.455:2
chr10	6002340	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:33:126:0.032:2
chr10	6002368	rs2228059	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:62,62:31:124:0.500:2	0/1:35,27:30:62:0.435:2	./.	./.	0/1:59,61:31:120:0.508:2	./.	./.	0/1:195,4:33:199:0.020:2	./.	0/1:45,59:31:104:0.567:2	0/1:80,84:32:164:0.512:2
chr10	6008172	rs2296139	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,8:33:16:0.500:2	./.	0/1:106,46:32:152:0.303:2	0/1:76,77:32:153:0.503:2	./.	0/1:104,82:32:186:0.441:2	./.	./.	./.
chr10	6060053	rs143550766	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,50:30:97:0.515:2	./.	./.	./.	./.	./.
chr10	6063508	rs2228149	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,130:31:130:1.00:2	./.	./.	./.	./.	./.	./.
chr10	6143292	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,6:31:139:0.043:2	./.	./.	./.
chr10	6265906	rs12783826	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	6268205	rs35877496	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,62:30:119:0.521:2	0/1:22,31:31:53:0.585:2	./.	./.	./.	0/1:0,82:31:84:1.00:2	./.	0/1:81,51:30:132:0.386:2	./.	./.	./.
chr10	6268253	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,4:30:72:0.056:2	./.	./.	./.	./.	./.	./.
chr10	6271083	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:142,4:32:146:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr10	6472891	rs11258747	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:14,5:33:19:0.263:2	0/1:6,6:33:12:0.500:2	./.	0/1:14,8:31:22:0.364:2	./.	./.	0/1:0,25:31:25:1.00:2	./.	./.	0/1:10,6:34:16:0.375:2	./.
chr10	6498723	rs11258943	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,59:32:130:0.454:2	0/1:33,25:32:58:0.431:2	0/1:10,11:31:21:0.524:2	0/1:51,63:32:114:0.553:2	./.	./.	0/1:1,108:32:109:0.991:2	./.	./.	0/1:57,43:32:100:0.430:2	./.
chr10	6520963	rs35751269	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,75:31:169:0.444:2	./.	./.	./.	./.	./.	./.	./.
chr10	6520981	rs17301189	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,75:31:189:0.397:2	./.	./.	./.	./.
chr10	6527143	rs2236379	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,26:33:47:0.553:2	0/1:11,19:32:30:0.633:2	./.	0/1:26,31:32:57:0.544:2	0/1:27,17:32:44:0.386:2	0/1:26,37:32:63:0.587:2	./.	./.	./.	0/1:34,31:32:65:0.477:2	./.
chr10	6553071	rs17555072	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,90:32:193:0.466:2	./.	./.	./.	./.	./.
chr10	7285632	rs2248474	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,26:31:26:1.00:2	0/1:0,20:30:20:1.00:2	./.	0/1:0,31:30:31:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,42:30:42:1.00:2	0/1:0,19:29:19:1.00:2	0/1:0,27:30:27:1.00:2	0/1:19,14:30:33:0.424:2	0/1:0,23:30:23:1.00:2	0/1:0,24:30:24:1.00:2
chr10	7390300	rs1751658	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:20,19:32:39:0.487:2	0/1:11,11:30:22:0.500:2	./.	./.	./.	./.	./.	0/1:21,20:30:41:0.488:2	./.	./.	./.
chr10	7412260	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:33:55:0.073:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	7605067	rs3824658	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,57:33:95:0.600:2	0/1:30,35:32:65:0.538:2	0/1:15,4:33:19:0.211:2	0/1:0,106:33:106:1.00:2	0/1:0,93:32:93:1.00:2	./.	0/1:0,110:33:110:1.00:2	0/1:0,151:32:151:1.00:2	0/1:1,115:33:116:0.991:2	0/1:4,92:33:96:0.958:2	0/1:68,55:32:123:0.447:2
chr10	7605101	rs10795551	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,121:32:121:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,128:33:128:1.00:2	0/1:0,106:31:106:1.00:2	0/1:0,159:32:159:1.00:2	0/1:0,144:32:144:1.00:2	0/1:0,177:33:177:1.00:2	0/1:0,132:33:132:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,139:32:139:1.00:2
chr10	7608165	rs61731873	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,65:30:134:0.489:2	./.	./.	./.	./.
chr10	7618501	rs2275068	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:28:16:1.00:2	0/1:0,17:28:17:1.00:2	0/1:3,3:30:6:0.500:2	0/1:15,10:28:25:0.400:2	0/1:13,19:26:32:0.594:2	0/1:8,24:26:32:0.750:2	0/1:11,15:29:26:0.577:2	0/1:16,11:28:27:0.407:2	0/1:0,17:28:17:1.00:2	0/1:0,14:28:14:1.00:2	0/1:11,8:28:19:0.421:2
chr10	7618509	rs34213756	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,8:32:18:0.444:2
chr10	7618583	rs189789587	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,19:30:51:0.373:2	./.	./.	./.	./.	./.
chr10	7618686	rs2275069	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:3,43:31:46:0.935:2	0/1:7,5:33:12:0.417:2	0/1:50,33:32:83:0.398:2	0/1:44,38:31:82:0.463:2	0/1:46,31:31:78:0.403:2	0/1:49,39:32:88:0.443:2	0/1:55,34:33:89:0.382:2	0/1:1,57:33:58:0.983:2	0/1:2,64:32:66:0.970:2	0/1:43,42:31:85:0.494:2
chr10	7621771	rs17431370	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,41:29:90:0.456:2	./.	./.	0/1:63,26:29:89:0.292:2	./.	./.	./.
chr10	7622009	rs41298373	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,5:26:13:0.385:2	./.	./.	./.
chr10	7628027	rs11255206	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,31:31:71:0.437:2	./.	./.	./.	./.	./.
chr10	7657984	rs35566317	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,31:29:63:0.492:2	./.	./.	./.	./.	./.
chr10	7679393	rs6602256	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,10:32:24:0.417:2	0/1:19,8:33:27:0.296:2	./.	./.	./.	0/1:15,20:31:35:0.571:2	./.	0/1:36,19:31:55:0.345:2	./.	0/1:15,8:31:23:0.348:2	0/1:18,27:32:45:0.600:2
chr10	7747155	rs76983422	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,9:29:18:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	7749183	rs73621253	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:11,19:32:30:0.633:2	0/1:12,10:32:22:0.455:2	./.	./.	0/1:12,9:31:21:0.429:2	./.	./.	./.	0/1:29,22:33:51:0.431:2	./.	./.
chr10	7759595	rs7072478	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,14:31:23:0.609:2	0/1:23,21:32:44:0.477:2	./.	0/1:11,18:30:29:0.621:2
chr10	7759679	rs35076349	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:34,29:30:63:0.460:2	0/1:26,14:30:40:0.350:2	0/1:8,3:30:11:0.273:2	./.	0/1:28,38:28:66:0.576:2	./.	./.	./.	0/1:50,37:29:87:0.425:2	./.	./.
chr10	7763661	rs7075296	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,108:33:108:1.00:2	0/1:0,70:33:70:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,181:33:181:1.00:2	0/1:0,167:32:167:1.00:2	0/1:0,152:32:152:1.00:2	0/1:1,172:33:173:0.994:2	0/1:0,178:33:178:1.00:2	0/1:0,180:33:180:1.00:2	0/1:0,113:33:113:1.00:2	0/1:0,145:33:145:1.00:2
chr10	7763669	rs147906523	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,90:33:189:0.476:2	./.	./.	./.	./.	./.	./.	./.
chr10	7774364	rs138441817	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,49:33:90:0.544:2	./.	./.	./.
chr10	7780646	rs3740217	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,33:33:84:0.393:2	0/1:24,20:33:44:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	7808035	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:33:50:0.080:2	./.
chr10	7808086	rs3736968	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:12,10:34:22:0.455:2	0/1:8,6:32:14:0.429:2	0/1:0,6:30:6:1.00:2	./.	./.	./.	./.	./.	0/1:19,23:34:42:0.548:2	0/1:0,47:34:47:1.00:2	./.
chr10	7820834	rs35628791	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,84:31:190:0.442:2	./.	0/1:99,84:31:183:0.459:2	./.	./.	./.
chr10	7841143	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:32:71:0.056:2	./.	./.	./.	./.
chr10	7844777	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:32:152:0.026:2
chr10	8006519	rs17366712	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,7:30:18:0.389:2	./.	./.	./.	./.	./.
chr10	8006798	rs4747647	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:13,20:32:33:0.606:2	0/1:13,9:32:22:0.409:2	./.	0/1:14,23:33:37:0.622:2	./.	./.	0/1:0,28:32:28:1.00:2	0/1:29,17:33:46:0.370:2	0/1:14,25:32:39:0.641:2	0/1:0,28:32:28:1.00:2	0/1:27,20:33:47:0.426:2
chr10	8006836	rs61731332	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,30:32:59:0.508:2	./.	./.	./.
chr10	8007559	rs10795583	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:10,5:30:15:0.333:2	./.	./.	0/1:3,8:31:11:0.727:2	./.	./.	0/1:0,13:32:13:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,20:31:20:1.00:2
chr10	8007560	rs1244229	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:10,5:30:15:0.333:2	./.	./.	0/1:0,11:29:11:1.00:2	./.	0/1:8,8:30:16:0.500:2	0/1:0,13:30:13:1.00:2	0/1:0,23:28:23:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,19:29:20:1.00:2
chr10	8093018	rs140379849	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,9:30:32:0.281:2	./.	./.	./.
chr10	8093034	rs501764	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,15:32:15:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,31:31:31:1.00:2	./.	0/1:25,9:31:34:0.265:2	0/1:0,25:33:25:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,43:31:43:1.00:2
chr10	8093185	rs485411	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:30:27:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,4:31:4:1.00:2	0/1:1,64:30:65:0.985:2	0/1:38,28:30:66:0.424:2	0/1:0,63:30:63:1.00:2	./.	0/1:51,39:30:90:0.433:2	0/1:0,57:31:57:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,50:30:50:1.00:2
chr10	8100632	rs2228254	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,12:31:27:0.444:2	./.	./.	./.	./.	./.
chr10	8100647	rs2229359	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,16:31:28:0.571:2	0/1:20,5:30:25:0.200:2	./.	./.	./.
chr10	8106031	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,4:29:106:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr10	8115908	rs11567941	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:21,18:27:39:0.462:2	0/1:12,13:27:26:0.520:2	./.	./.	0/1:46,32:28:79:0.410:2	./.	./.	./.	./.	./.	./.
chr10	11299735	rs2277212	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,89:32:91:0.978:2	0/1:1,45:32:46:0.978:2	0/1:6,5:31:11:0.455:2	0/1:61,33:31:94:0.351:2	0/1:37,34:30:71:0.479:2	0/1:57,37:31:94:0.394:2	0/1:51,37:30:88:0.420:2	0/1:0,113:30:113:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,70:30:70:1.00:2	0/1:1,110:30:111:0.991:2
chr10	11356160	rs2246449	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:80,61:32:141:0.433:2	0/1:47,50:32:97:0.515:2	./.	./.	0/1:4,112:31:116:0.966:2	./.	0/1:2,100:31:102:0.980:2	0/1:145,4:32:150:0.027:2	./.	./.	./.
chr10	11361021	rs149654846	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,31:30:77:0.403:2	./.	./.	./.	./.	./.	./.
chr10	11361074	rs185757990	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,45:29:58:0.776:2	./.	./.	./.
chr10	11504752	rs12570211	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,41:30:77:0.532:2	./.	./.	0/1:46,28:31:74:0.378:2	./.	./.
chr10	11505175	rs3740204	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:5,10:33:15:0.667:2	0/1:2,3:32:5:0.600:2	./.	0/1:7,5:34:12:0.417:2	./.	0/1:9,6:32:15:0.400:2	0/1:6,4:32:10:0.400:2	0/1:5,12:32:17:0.706:2	0/1:8,6:33:14:0.429:2	./.	./.
chr10	11505490	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,5:27:154:0.032:2	./.	./.
chr10	11505743	rs113611342	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,5:31:8:0.625:2	./.	./.	./.	./.	./.	./.
chr10	11532807	rs882205	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,12:33:17:0.706:2	./.	./.	./.	0/1:71,61:33:133:0.462:2	./.	./.	0/1:70,45:33:115:0.391:2	./.
chr10	11784900	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.
chr10	11789382	rs4750090	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:31:66:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,81:31:81:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,108:31:108:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,114:32:114:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,87:31:87:1.00:2	0/1:0,78:32:78:1.00:2
chr10	11789405	rs4750091	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:31:71:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,83:31:83:1.00:2	0/1:0,106:31:106:1.00:2	0/1:0,103:32:103:1.00:2	0/1:0,108:31:108:1.00:2	0/1:0,103:32:103:1.00:2	0/1:0,84:31:84:1.00:2	0/1:0,80:31:80:1.00:2
chr10	11789468	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	11791568	rs192975215	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,7:32:9:0.778:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	11797436	rs7899215	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:33:54:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,79:33:79:1.00:2	0/1:0,120:33:120:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,126:33:126:1.00:2	0/1:0,103:33:103:1.00:2	0/1:0,88:33:88:1.00:2	0/1:0,76:33:76:1.00:2	0/1:0,79:33:79:1.00:2
chr10	11797467	rs7910140	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:30:47:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,84:30:84:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,85:30:85:1.00:2	0/1:0,87:30:88:1.00:2	0/1:0,72:30:72:1.00:2	0/1:0,55:30:55:1.00:2	0/1:1,56:31:58:0.982:2
chr10	11797500	rs35986488	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,17:31:39:0.436:2	0/1:10,14:31:24:0.583:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	11805249	rs61739577	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,25:29:51:0.490:2	0/1:19,23:31:42:0.548:2	./.	./.	./.	0/1:27,14:31:41:0.341:2	0/1:25,12:31:37:0.324:2
chr10	11805339	rs17850531	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:31:3:1.00:2	0/1:20,14:31:34:0.412:2	./.	./.	0/1:20,15:31:35:0.429:2	./.	0/1:1,35:31:36:0.972:2	./.	0/1:18,20:31:38:0.526:2
chr10	11805354	rs12258196	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,13:30:29:0.448:2	0/1:9,6:30:15:0.400:2	0/1:0,3:31:3:1.00:2	0/1:20,13:30:33:0.394:2	0/1:15,14:27:29:0.483:2	0/1:0,37:29:37:1.00:2	0/1:1,28:30:29:0.966:2	./.	0/1:0,24:29:24:1.00:2	0/1:11,13:29:24:0.542:2	0/1:0,26:28:26:1.00:2
chr10	11805357	rs10906011	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,14:31:30:0.467:2	0/1:8,6:29:14:0.429:2	0/1:0,3:30:3:1.00:2	0/1:20,13:30:33:0.394:2	0/1:16,14:30:30:0.467:2	0/1:0,37:30:37:1.00:2	0/1:1,28:31:29:0.966:2	./.	0/1:0,24:32:24:1.00:2	0/1:11,13:31:24:0.542:2	0/1:0,25:30:25:1.00:2
chr10	11912431	rs12253600	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:9,9:33:18:0.500:2	0/1:3,2:34:5:0.400:2	./.	0/1:16,13:31:29:0.448:2	./.	0/1:7,15:31:22:0.682:2	./.	./.	0/1:15,9:32:24:0.375:2	./.	0/1:8,7:32:15:0.467:2
chr10	11912819	rs190443890	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,25:32:51:0.490:2	./.
chr10	12001221	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,6:33:148:0.041:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	12043790	rs11595168	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,34:32:74:0.459:2	0/1:14,19:32:33:0.576:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	12046546	rs7079388	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,28:33:79:0.354:2
chr10	12071397	rs11257490	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,6:31:14:0.429:2	0/1:21,28:30:49:0.571:2	./.	./.	./.	./.	0/1:27,35:32:62:0.565:2	./.	./.
chr10	12071444	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:28:67:0.060:2	./.	./.	./.
chr10	12111090	rs1279138	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:32:42:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,44:33:44:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,47:31:47:1.00:2
chr10	12126552	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:33:65:0.062:2	./.	./.	./.
chr10	12131081	rs3740015	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:38,25:32:63:0.397:2	0/1:26,19:32:45:0.422:2	./.	0/1:62,41:32:103:0.398:2	0/1:0,142:32:143:1.00:2	0/1:72,60:31:132:0.455:2	0/1:3,104:32:107:0.972:2	0/1:1,144:32:145:0.993:2	0/1:0,117:33:117:1.00:2	0/1:40,45:32:85:0.529:2	0/1:54,54:33:108:0.500:2
chr10	12131218	rs3740016	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,8:30:18:0.444:2
chr10	12139803	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,31:32:56:0.564:2	./.
chr10	12139884	rs35537424	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,30:31:70:0.429:2	./.	./.	./.	./.	./.	./.	./.
chr10	12143105	rs2062988	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,46:33:90:0.511:2	0/1:28,24:33:52:0.462:2	./.	0/1:56,46:33:102:0.451:2	0/1:0,83:32:83:1.00:2	0/1:59,50:33:109:0.459:2	0/1:0,65:32:65:1.00:2	0/1:0,109:33:109:1.00:2	0/1:1,118:33:119:0.992:2	0/1:48,47:33:95:0.495:2	0/1:2,104:32:106:0.981:2
chr10	12148259	rs1701472	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:33:80:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,115:32:115:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,114:33:114:1.00:2	0/1:0,149:32:149:1.00:2	0/1:0,119:33:119:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,120:32:120:1.00:2
chr10	12148262	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:33:140:0.029:2	./.	./.
chr10	12148286	rs1615510	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:30:94:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,156:31:156:1.00:2	0/1:0,135:30:135:1.00:2	0/1:0,143:30:143:1.00:2	0/1:0,151:31:151:1.00:2	0/1:1,181:31:182:0.995:2	0/1:1,171:31:172:0.994:2	0/1:0,133:30:133:1.00:2	0/1:0,156:31:158:1.00:2
chr10	12149939	rs1722462	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:31:41:1.00:2	0/1:1,29:32:30:0.967:2	0/1:1,10:30:11:0.909:2	0/1:0,59:31:59:1.00:2	0/1:0,99:31:99:1.00:2	0/1:1,93:31:94:0.989:2	0/1:1,83:31:84:0.988:2	0/1:0,118:31:118:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,56:32:56:1.00:2	0/1:41,40:31:81:0.494:2
chr10	12159668	rs12416681	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:32:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:51,42:32:93:0.452:2
chr10	12160799	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,11:33:27:0.407:2	./.	./.	./.	./.
chr10	12171740	rs11257552	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.
chr10	12191933	rs10466280	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,25:33:51:0.490:2	0/1:15,16:32:31:0.516:2	0/1:4,4:30:8:0.500:2	0/1:26,36:32:62:0.581:2	./.	0/1:0,48:31:48:1.00:2	0/1:17,20:32:37:0.541:2	0/1:26,29:32:55:0.527:2	0/1:23,31:33:55:0.574:2	0/1:24,22:33:46:0.478:2	./.
chr10	12197843	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,12:16:153:0.078:2	./.	./.	0/1:122,9:21:132:0.069:2
chr10	12203010	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,5:33:196:0.026:2	./.	./.	./.
chr10	12209752	rs6686	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,29:30:64:0.453:2	0/1:24,12:30:36:0.333:2	0/1:3,5:31:8:0.625:2	0/1:39,20:30:59:0.339:2	./.	0/1:0,49:29:49:1.00:2	0/1:24,29:30:53:0.547:2	0/1:43,28:29:71:0.394:2	0/1:45,37:31:82:0.451:2	0/1:30,27:31:57:0.474:2	0/1:45,40:29:85:0.471:2
chr10	12212186	rs11257577	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,16:33:42:0.381:2	0/1:19,21:33:40:0.525:2	0/1:1,7:32:8:0.875:2	0/1:37,20:33:57:0.351:2	0/1:0,38:31:38:1.00:2	./.	0/1:24,8:33:32:0.250:2	0/1:36,22:32:58:0.379:2	0/1:32,19:33:51:0.373:2	0/1:40,21:33:61:0.344:2	0/1:41,41:30:82:0.500:2
chr10	12228298	rs2272207	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,30:31:71:0.423:2
chr10	12292344	rs10951	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,25:32:60:0.417:2	0/1:21,15:32:36:0.417:2	0/1:0,7:30:7:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,41:31:41:1.00:2	0/1:26,17:31:45:0.395:2	0/1:48,22:33:70:0.314:2	0/1:0,67:31:67:1.00:2	0/1:24,26:31:50:0.520:2	0/1:1,44:31:45:0.978:2	0/1:34,20:31:54:0.370:2
chr10	12292348	rs12590	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,24:28:43:0.558:2	0/1:18,39:29:57:0.684:2	./.	0/1:26,24:30:50:0.480:2	./.	./.
chr10	12292454	rs1051055	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:29:39:1.00:2	0/1:1,14:29:15:0.933:2	0/1:0,8:30:8:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,33:29:33:1.00:2	0/1:36,21:30:57:0.368:2	0/1:15,10:30:25:0.400:2	0/1:0,52:30:52:1.00:2	0/1:2,59:28:61:0.967:2	0/1:0,47:29:47:1.00:2	0/1:40,24:31:64:0.375:2
chr10	12867598	rs1757051	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:31:29:1.00:2	0/1:0,14:31:14:1.00:2	0/1:4,3:36:7:0.429:2	0/1:1,51:33:52:0.981:2	0/1:20,15:31:35:0.429:2	0/1:0,34:32:34:1.00:2	0/1:20,14:31:34:0.412:2	0/1:0,36:32:36:1.00:2	0/1:0,45:33:45:1.00:2	0/1:15,18:31:33:0.545:2	0/1:0,56:31:56:1.00:2
chr10	12940444	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	12940455	rs10906249	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,6:27:6:1.00:2	0/1:0,2:27:3:1.00:2	0/1:0,2:31:2:1.00:2	./.	0/1:0,9:28:9:1.00:2	0/1:0,6:25:6:1.00:2	0/1:0,2:28:2:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,6:26:6:1.00:2	./.
chr10	13043280	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:32:136:0.029:2	./.	./.	./.
chr10	13151224	rs2234968	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	./.	0/1:16,17:32:33:0.515:2	0/1:2,31:31:33:0.939:2	./.	./.	0/1:9,12:31:21:0.571:2
chr10	13158262	rs2244380	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:31:52:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,47:31:47:1.00:2	0/1:15,10:30:25:0.400:2	0/1:0,52:29:52:1.00:2	0/1:1,35:30:36:0.972:2	0/1:0,52:30:52:1.00:2	0/1:0,48:32:48:1.00:2	0/1:24,25:31:49:0.510:2	0/1:0,59:30:59:1.00:2
chr10	13166015	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	13166076	rs523747	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,14:30:14:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,2:30:2:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,39:31:39:1.00:2
chr10	13178750	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:33:93:0.043:2	./.	./.
chr10	13178848	rs34650519	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:29:91:0.044:2	./.
chr10	13206233	rs7090944	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,38:33:99:0.384:2	0/1:37,19:32:56:0.339:2	0/1:0,12:31:12:1.00:2	0/1:0,127:32:127:1.00:2	0/1:45,31:31:76:0.408:2	0/1:0,109:30:109:1.00:2	0/1:61,32:32:93:0.344:2	0/1:4,107:31:111:0.964:2	0/1:0,120:33:120:1.00:2	0/1:77,56:32:133:0.421:2	0/1:0,139:31:139:1.00:2
chr10	13214427	rs17152897	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,35:32:66:0.530:2	./.	./.	./.	./.	./.	./.
chr10	13230915	rs35114749	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,71:31:131:0.542:2	./.	./.	./.
chr10	13230934	rs7904071	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,28:32:67:0.418:2	0/1:21,32:32:53:0.604:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	13230950	rs2296222	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,42:31:95:0.442:2	./.	./.	0/1:56,45:31:101:0.446:2	./.	0/1:26,27:31:53:0.509:2	./.
chr10	13234356	rs7905784	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,30:32:58:0.517:2	0/1:27,10:33:37:0.270:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	13237101	rs145055712	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,50:32:94:0.532:2	./.	./.
chr10	13239651	rs2274110	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:34:9:0.444:2	./.	./.	./.	./.	./.	0/1:0,44:33:44:1.00:2	./.	0/1:36,26:33:62:0.419:2
chr10	13271674	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:31:127:0.031:2	./.
chr10	13275553	rs3829925	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:29:38:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,25:27:25:1.00:2	0/1:0,50:29:50:1.00:2	0/1:26,20:29:46:0.435:2	0/1:0,35:29:35:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,32:29:32:1.00:2	0/1:0,60:29:60:1.00:2
chr10	13275764	rs41291317	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,24:29:51:0.471:2	0/1:13,16:29:29:0.552:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	13276179	rs942418	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:29:94:1.00:2	0/1:0,54:29:54:1.00:2	0/1:0,13:29:13:1.00:2	0/1:0,120:30:120:1.00:2	0/1:0,134:30:134:1.00:2	0/1:0,165:30:165:1.00:2	0/1:0,131:30:132:1.00:2	0/1:0,129:30:129:1.00:2	0/1:0,122:31:122:1.00:2	0/1:0,93:29:93:1.00:2	0/1:0,99:28:99:1.00:2
chr10	13276241	rs187657704	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,39:32:100:0.390:2	./.	./.	./.	./.	./.	./.
chr10	13330402	rs473407	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,23:30:44:0.523:2	0/1:15,14:30:29:0.483:2	./.	./.	./.	0/1:26,23:31:49:0.469:2	./.	0/1:44,19:30:63:0.302:2	./.	./.	./.
chr10	13337588	rs1747682	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,16:32:16:1.00:2	0/1:0,8:31:8:1.00:2	./.	0/1:0,18:32:18:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,19:32:19:1.00:2
chr10	13340236	rs28938169	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:61,32:33:93:0.344:2	0/1:24,11:33:35:0.314:2	./.	0/1:46,29:31:75:0.387:2	./.	./.	./.	./.	./.	./.	./.
chr10	13341493	rs3802587	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,20:30:41:0.500:2
chr10	13375906	rs10752297	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,16:30:16:1.00:2	./.	0/1:0,40:29:40:1.00:2	0/1:0,79:30:79:1.00:2	0/1:57,42:29:99:0.424:2	0/1:50,45:29:95:0.474:2	0/1:62,40:29:102:0.392:2	0/1:0,71:29:71:1.00:2	0/1:49,66:28:115:0.574:2
chr10	13378334	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,27:32:59:0.458:2	./.	./.
chr10	13380726	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:34:98:0.041:2	./.	./.	./.	./.
chr10	13380774	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:30:89:0.045:2
chr10	13386769	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,5:27:146:0.034:2	./.	./.	./.	./.
chr10	13386815	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,6:28:152:0.039:2	./.	./.	./.	./.
chr10	13386824	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,5:30:160:0.031:2	./.	./.	./.	./.
chr10	13386859	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:135,4:31:139:0.029:2	./.	./.	./.	./.	./.	./.
chr10	13481427	rs12415754	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:32:8:1.00:2	0/1:37,27:31:64:0.422:2	0/1:59,37:31:96:0.385:2	./.	0/1:64,56:31:120:0.467:2	0/1:59,38:32:97:0.392:2	./.	./.	0/1:58,41:31:100:0.414:2
chr10	13494594	rs2277222	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,28:32:28:1.00:2	0/1:71,82:33:153:0.536:2	0/1:45,47:32:92:0.511:2	./.	0/1:66,50:33:116:0.431:2	0/1:91,95:33:186:0.511:2	./.	./.	0/1:88,101:32:189:0.534:2
chr10	13534851	rs2251555	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,23:30:44:0.523:2	0/1:17,15:33:32:0.469:2	./.	./.	0/1:25,18:32:43:0.419:2	0/1:21,14:32:35:0.400:2	./.	0/1:32,11:32:43:0.256:2	./.	0/1:28,16:33:44:0.364:2	0/1:0,52:32:52:1.00:2
chr10	13633835	rs10906419	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,75:32:76:0.987:2	0/1:0,29:32:29:1.00:2	0/1:5,9:33:14:0.643:2	0/1:37,53:33:90:0.589:2	0/1:65,30:32:95:0.316:2	0/1:61,35:33:96:0.365:2	0/1:64,36:32:100:0.360:2	0/1:70,52:32:123:0.426:2	./.	./.	./.
chr10	13647711	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:31:66:0.061:2	./.	./.	./.
chr10	13653615	rs62640925	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,38:31:62:0.613:2	./.	./.	./.	./.	./.	./.	./.
chr10	13653653	rs1135102	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:34:10:0.500:2	0/1:35,44:33:79:0.557:2	0/1:27,33:32:60:0.550:2	0/1:28,23:32:51:0.451:2	0/1:39,42:33:81:0.519:2	./.	0/1:45,34:33:79:0.430:2	0/1:0,54:33:54:1.00:2	0/1:30,28:33:58:0.483:2
chr10	13699338	rs199968440	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,6:16:15:0.400:2
chr10	13702435	rs138059200	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,78:31:163:0.479:2	./.	./.	./.	./.	./.
chr10	13735887	rs41291333	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:17,18:31:35:0.514:2	0/1:8,11:31:19:0.579:2	./.	0/1:23,33:30:57:0.589:2	./.	./.	./.	./.	./.	./.	0/1:15,24:29:39:0.615:2
chr10	13735947	rs2296596	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,27:31:62:0.435:2	0/1:16,14:33:30:0.467:2	./.	0/1:55,38:32:93:0.409:2	0/1:82,53:32:135:0.393:2	./.	./.	./.	./.	./.	0/1:29,24:33:53:0.453:2
chr10	13782517	rs10508466	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:121,69:32:190:0.363:2	./.	./.	./.	./.	./.	./.
chr10	14478618	rs11259096	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:59,40:34:99:0.404:2	0/1:23,28:32:51:0.549:2	./.	./.	./.	./.	./.	0/1:78,60:33:138:0.435:2	./.	./.	./.
chr10	14880394	rs45622935	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,42:30:99:0.424:2	./.	./.	./.
chr10	14880395	rs45480695	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,42:30:99:0.424:2	./.	./.	./.
chr10	14891406	rs17155992	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,21:32:58:0.362:2	./.	./.	./.	./.
chr10	14909255	rs61751214	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,37:33:63:0.587:2	./.	./.
chr10	14939067	rs45473500	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,16:30:41:0.390:2
chr10	14941654	rs17353856	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:65,39:32:104:0.375:2	0/1:28,39:32:67:0.582:2	./.	0/1:80,69:30:149:0.463:2	./.	0/1:80,72:31:153:0.474:2	./.	./.	./.	./.	./.
chr10	14944444	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:141,4:32:146:0.028:2	./.	./.	./.	./.	./.	./.
chr10	14970134	rs181619477	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,20:32:63:0.317:2	./.	./.	./.	./.	./.	./.	./.
chr10	14974905	rs12768894	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,36:29:93:0.387:2	0/1:30,29:28:59:0.492:2	0/1:5,6:29:11:0.545:2	0/1:63,53:29:116:0.457:2	./.	0/1:58,51:29:109:0.468:2	./.	./.	./.	./.	./.
chr10	14976414	rs7076862	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,42:32:95:0.442:2	0/1:50,24:32:74:0.324:2	0/1:10,7:31:17:0.412:2	0/1:89,49:31:138:0.355:2	0/1:84,38:31:122:0.311:2	0/1:2,94:31:96:0.979:2	0/1:4,74:31:78:0.949:2	./.	./.	0/1:0,107:32:107:1.00:2	0/1:79,58:32:137:0.423:2
chr10	14976727	rs35441642	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,56:30:123:0.455:2	./.	./.
chr10	15008493	rs4750568	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:58,47:32:106:0.448:2	0/1:36,33:32:69:0.478:2	./.	0/1:58,62:32:120:0.517:2	./.	0/1:1,120:32:122:0.992:2	./.	0/1:2,171:32:174:0.988:2	0/1:0,133:33:133:1.00:2	./.	0/1:75,66:33:141:0.468:2
chr10	15098897	rs12767853	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,13:33:23:0.565:2	./.	./.	./.	./.
chr10	15106413	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,71:33:185:0.384:2	./.	./.
chr10	15106441	rs10906818	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:68,63:33:131:0.481:2	0/1:27,38:33:65:0.585:2	./.	./.	0/1:43,34:32:77:0.442:2	0/1:54,54:32:108:0.500:2	0/1:111,4:34:115:0.035:2	0/1:62,68:33:130:0.523:2	0/1:63,75:34:138:0.543:2	0/1:59,71:34:130:0.546:2	./.
chr10	15113876	rs141112464	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,50:28:92:0.543:2	./.	./.	./.	./.	./.	./.
chr10	15130758	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:29:48:0.083:2	./.	./.	./.	./.	./.
chr10	15138615	rs7896053	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,7:32:9:0.778:2	0/1:162,4:32:166:0.024:2	./.	./.	./.	./.	./.	0/1:114,4:32:118:0.034:2	./.
chr10	15145361	rs35539850	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,28:29:61:0.459:2	0/1:29,20:31:49:0.408:2	./.	./.	./.
chr10	15145855	rs15772	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:33:6:0.500:2	./.	./.	./.	0/1:13,13:31:26:0.500:2	0/1:16,20:31:36:0.556:2	./.	./.	./.
chr10	15145917	rs12249258	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:28:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	15183463	rs75191203	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,5:33:14:0.357:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	15255283	rs139938475	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,9:32:14:0.643:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	15255292	rs3814168	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,60:29:115:0.522:2
chr10	15256194	rs3814165	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,41:32:92:0.446:2	0/1:28,24:31:52:0.462:2	0/1:5,5:31:10:0.500:2	0/1:3,105:31:108:0.972:2	0/1:34,31:31:65:0.477:2	0/1:60,48:31:108:0.444:2	0/1:28,37:32:65:0.569:2	./.	./.	./.	./.
chr10	15296844	rs141312276	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,32:33:80:0.400:2	./.	./.	./.
chr10	15317863	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:35:109:0.037:2	./.	./.	./.	./.
chr10	15573050	rs1041135	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:33:71:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,122:33:122:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,118:33:118:1.00:2	0/1:0,95:33:95:1.00:2	0/1:0,104:33:104:1.00:2	0/1:0,122:34:122:1.00:2	0/1:1,76:33:77:0.987:2	0/1:0,140:33:140:1.00:2
chr10	15617521	rs112914197	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,39:33:77:0.513:2	./.	./.	./.
chr10	15648335	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:35:144:0.028:2
chr10	15649698	rs9333269	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,28:30:101:0.280:2
chr10	15655745	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:34:45:0.089:2	./.
chr10	15713667	rs7100510	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:8,6:31:14:0.429:2	./.	0/1:0,2:32:2:1.00:2	0/1:5,7:33:12:0.583:2	0/1:0,8:31:8:1.00:2	0/1:0,11:33:11:1.00:2	0/1:7,7:33:14:0.500:2	./.	0/1:8,15:33:23:0.652:2	0/1:0,10:32:10:1.00:2	./.
chr10	16547058	rs7904014	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:62,52:33:114:0.456:2	0/1:44,41:33:85:0.482:2	./.	0/1:0,103:33:103:1.00:2	./.	./.	0/1:71,38:32:109:0.349:2	./.	0/1:85,58:34:143:0.406:2	0/1:0,104:33:104:1.00:2	0/1:104,66:32:170:0.388:2
chr10	16562600	rs72772306	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,87:31:171:0.509:2	./.	./.	./.	./.	./.	0/1:111,55:31:166:0.331:2	./.
chr10	16794623	rs10445	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,25:31:50:0.500:2	0/1:24,40:32:64:0.625:2	./.	./.
chr10	16796919	rs1049632	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:14,12:31:26:0.462:2	0/1:18,13:32:31:0.419:2	./.	./.	./.	./.	0/1:10,11:31:21:0.524:2	0/1:31,15:32:46:0.326:2	0/1:30,20:31:50:0.400:2	0/1:16,12:32:28:0.429:2	./.
chr10	16796949	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:31:57:0.070:2	./.	./.	./.
chr10	16796954	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:30:57:0.070:2	./.	./.	./.
chr10	16870912	rs1801232	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,47:31:105:0.448:2	./.
chr10	16882518	rs703064	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,5:29:13:0.385:2	0/1:84,63:29:147:0.429:2	0/1:1,107:28:108:0.991:2	0/1:5,102:28:107:0.953:2	0/1:7,112:27:119:0.941:2	0/1:57,71:29:128:0.555:2	0/1:86,58:29:144:0.403:2	0/1:53,60:29:114:0.531:2	0/1:3,142:28:145:0.979:2
chr10	16911739	rs184750323	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,70:31:148:0.473:2	./.	./.	./.	./.
chr10	16911784	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:32:151:0.026:2
chr10	16916484	rs142581908	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,54:31:108:0.500:2	./.	./.	./.
chr10	16918972	rs1801241	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,35:29:67:0.522:2	0/1:17,19:28:36:0.528:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	16918997	rs1801240	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,9:32:10:0.900:2	./.	./.	./.	0/1:62,77:33:139:0.554:2	./.	./.	./.	./.
chr10	16919052	rs1801239	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,7:30:9:0.778:2	./.	./.	./.	0/1:68,78:29:146:0.534:2	./.	./.	./.	./.
chr10	16943371	rs2796835	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:33:80:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,84:33:84:1.00:2	0/1:0,107:33:107:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,76:34:76:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,96:32:96:1.00:2
chr10	16948215	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:32:81:0.049:2	./.	./.	./.
chr10	16948266	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:33:126:0.032:2	./.	./.	./.
chr10	16948390	rs3740168	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,31:29:60:0.517:2	0/1:26,19:28:45:0.422:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	16949550	rs3740165	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:31:16:0.563:2	./.	./.	./.	./.	0/1:80,59:30:139:0.424:2	./.	./.	./.
chr10	16967401	rs1276712	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:30:85:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,89:30:90:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,65:29:65:1.00:2	0/1:0,81:29:81:1.00:2	0/1:0,83:30:83:1.00:2	0/1:0,85:30:85:1.00:2	0/1:0,116:31:117:1.00:2
chr10	16967417	rs144360241	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,29:33:67:0.433:2	./.
chr10	16967586	rs62619939	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:28:7:0.571:2	./.	./.	./.	0/1:18,14:29:32:0.438:2	./.	./.	./.	./.
chr10	16967769	rs146319349	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,25:31:45:0.556:2	./.	./.	./.	./.
chr10	16979661	rs1801234	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:14,9:30:23:0.391:2	0/1:6,6:31:12:0.500:2	./.	./.	0/1:7,10:29:17:0.588:2	./.	./.	./.	0/1:16,11:32:27:0.407:2	0/1:10,11:31:21:0.524:2	0/1:17,17:29:34:0.500:2
chr10	16979709	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:30:38:0.105:2
chr10	16979714	rs41289305	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,6:28:21:0.286:2	0/1:12,7:29:19:0.368:2	./.	./.	./.	./.	./.	./.	0/1:6,9:30:15:0.600:2	./.	./.
chr10	16989272	rs61841454	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,41:32:121:0.339:2
chr10	17024503	rs1801231	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,61:30:61:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,62:33:62:1.00:2	0/1:26,28:32:54:0.519:2	0/1:0,57:31:57:1.00:2
chr10	17024615	rs1801229	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,21:30:21:1.00:2	0/1:0,10:31:10:1.00:2	./.	0/1:1,36:30:37:0.973:2	0/1:0,24:30:24:1.00:2	0/1:0,15:28:15:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,26:31:26:1.00:2	0/1:11,14:30:25:0.560:2	0/1:0,24:31:24:1.00:2
chr10	17032358	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,6:30:198:0.030:2	./.	./.	./.
chr10	17110213	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:31:83:0.048:2	./.	./.	./.	./.	./.
chr10	17110639	rs148869805	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,46:30:103:0.447:2	./.	./.	./.	./.	./.
chr10	17113563	rs1801225	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,6:29:12:0.500:2	0/1:5,3:32:8:0.375:2	./.	0/1:6,3:32:9:0.333:2	0/1:6,3:30:9:0.333:2	0/1:3,9:32:12:0.750:2	./.	0/1:0,18:32:18:1.00:2	./.	0/1:2,2:33:4:0.500:2	0/1:13,11:32:24:0.458:2
chr10	17147521	rs1801224	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:31:67:1.00:2	0/1:1,34:31:35:0.971:2	0/1:4,5:32:9:0.556:2	0/1:0,73:32:73:1.00:2	0/1:34,33:32:67:0.493:2	0/1:44,46:31:90:0.511:2	0/1:42,48:32:90:0.533:2	0/1:1,73:32:74:0.986:2	0/1:0,72:33:72:1.00:2	0/1:46,28:32:74:0.378:2	0/1:54,34:32:88:0.386:2
chr10	17152994	rs1801223	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	0/1:25,24:31:49:0.490:2	0/1:28,27:31:55:0.491:2	./.	./.	0/1:34,18:32:52:0.346:2	./.
chr10	17156151	rs1801222	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:33:10:1.00:2	0/1:0,126:32:126:1.00:2	0/1:58,70:32:128:0.547:2	0/1:1,124:32:125:0.992:2	0/1:0,159:32:159:1.00:2	0/1:54,98:32:152:0.645:2	./.	0/1:0,72:32:72:1.00:2	0/1:62,68:32:130:0.523:2
chr10	17157572	rs41289313	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:104,85:32:190:0.450:2	./.	./.	./.	./.	./.	0/1:55,51:32:106:0.481:2
chr10	17194026	rs17139991	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,8:31:9:0.889:2	./.	./.	./.	./.	./.
chr10	17196670	rs3736820	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,13:31:23:0.565:2	./.	./.	./.	./.	./.
chr10	17199778	rs11254408	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,7:30:20:0.350:2	./.	./.	./.	./.	./.
chr10	17202360	rs374843389	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	17204187	rs11254413	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:28:6:1.00:2	0/1:28,21:30:49:0.429:2	0/1:15,9:30:24:0.375:2	0/1:0,38:29:38:1.00:2	0/1:29,11:31:40:0.275:2	0/1:40,12:31:52:0.231:2	0/1:35,20:32:55:0.364:2	./.	./.
chr10	17204247	rs10904892	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,11:30:11:1.00:2	0/1:0,6:30:6:1.00:2	./.	./.	./.	./.	0/1:5,6:23:11:0.545:2	0/1:3,6:31:9:0.667:2	0/1:6,7:30:13:0.538:2	0/1:1,6:27:7:0.857:2	0/1:1,12:29:13:0.923:2
chr10	17204248	rs200006483	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:11,10:27:21:0.476:2	0/1:6,4:31:10:0.400:2	./.	./.	./.	./.	0/1:10,5:25:15:0.333:2	0/1:9,6:26:15:0.400:2	0/1:13,8:24:21:0.381:2	0/1:6,10:28:16:0.625:2	0/1:13,13:28:26:0.500:2
chr10	17210881	rs7096233	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,13:30:30:0.433:2	./.	./.	./.	./.	./.
chr10	17216556	rs2273734	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:31:9:1.00:2	0/1:40,29:32:69:0.420:2	0/1:35,32:31:67:0.478:2	0/1:2,55:31:57:0.965:2	0/1:45,17:32:62:0.274:2	0/1:45,34:32:79:0.430:2	0/1:49,30:32:79:0.380:2	./.	./.
chr10	17365146	rs150777747	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:31:9:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	17495623	rs369560766	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,4:27:59:0.068:2	./.	./.	./.	./.	./.	./.
chr10	17636309	rs1053926	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,14:29:31:0.452:2	./.	./.	./.	./.	0/1:91,53:30:144:0.368:2	./.	0/1:65,57:31:122:0.467:2	0/1:93,67:30:160:0.419:2
chr10	17636310	rs55951542	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:32:69:0.058:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	17659131	rs11254692	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:29:4:1.00:2	./.	./.	./.	0/1:0,4:27:4:1.00:2	0/1:0,4:29:4:1.00:2	./.	./.
chr10	17659149	rs7895850	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	0/1:0,4:30:4:1.00:2	0/1:0,4:31:4:1.00:2	./.	./.
chr10	17686334	rs17141457	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:121,72:31:193:0.373:2	0/1:91,96:30:188:0.513:2	./.	0/1:94,101:30:197:0.518:2	./.	./.	./.	./.
chr10	17750825	rs138000495	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:33:85:0.047:2	./.	./.	./.	./.
chr10	17756596	rs12221	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:37,35:32:72:0.486:2	0/1:25,16:31:41:0.390:2	0/1:8,6:31:14:0.429:2	./.	./.	0/1:28,56:31:84:0.667:2	./.	0/1:55,40:31:95:0.421:2	./.	./.	./.
chr10	17838114	rs150996096	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,30:31:72:0.417:2	./.	./.	0/1:2,55:32:57:0.965:2	./.	./.	./.
chr10	17838224	.	C	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,17:32:17:1.00:2	./.	./.	0/1:82,76:31:158:0.481:2	0/1:71,59:32:131:0.454:2	./.	0/1:69,90:33:159:0.566:2	0/1:80,71:32:151:0.470:2	./.
chr10	17869577	rs370136276	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:113,76:32:189:0.402:2	0/1:113,78:32:191:0.408:2	./.	0/1:100,92:32:192:0.479:2	./.	0/1:106,86:31:192:0.448:2	./.	./.	./.	./.	./.
chr10	17875762	rs374113136	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr10	17875816	rs56331215	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,8:30:55:0.145:2	0/1:45,9:31:54:0.167:2	./.	./.	./.	0/1:0,12:30:12:1.00:2	./.	./.	./.	./.	./.
chr10	17891705	rs1926736	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,136:30:137:1.00:2	0/1:0,102:29:102:1.00:2	0/1:0,36:30:36:1.00:2	0/1:109,88:30:197:0.447:2	0/1:101,95:29:197:0.485:2	0/1:3,146:30:149:0.980:2	0/1:4,189:30:193:0.979:2	0/1:93,100:29:193:0.518:2	0/1:95,97:31:193:0.505:2	0/1:107,85:30:192:0.443:2	0/1:100,89:30:189:0.471:2
chr10	17894998	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:106,72:32:178:0.404:2	./.	./.	./.	./.	./.	./.	./.
chr10	17908610	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,4:30:35:0.114:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	17912929	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,63:33:132:0.477:2	./.	0/1:78,52:32:130:0.400:2	./.	./.	0/1:96,71:34:167:0.425:2	./.	./.
chr10	17952354	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,62:32:136:0.456:2	./.	0/1:71,61:31:132:0.462:2	./.	./.	0/1:93,52:32:146:0.359:2	./.	./.
chr10	18085101	rs143773270	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,35:32:71:0.493:2	./.	./.	0/1:0,75:33:75:1.00:2	./.	./.	./.
chr10	18085211	rs145947891	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,17:32:17:1.00:2	./.	./.	0/1:62,63:32:125:0.504:2	0/1:82,49:31:131:0.374:2	./.	0/1:119,75:33:194:0.387:2	0/1:73,61:32:135:0.455:2	./.
chr10	18116531	rs201810168	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:112,71:33:183:0.388:2	0/1:100,90:32:190:0.474:2	./.	0/1:124,71:32:195:0.364:2	./.	0/1:130,60:30:190:0.316:2	./.	./.	./.	./.	./.
chr10	18122716	rs111490411	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,26:34:26:1.00:2	0/1:0,17:33:17:1.00:2	./.	./.	./.	0/1:110,30:33:141:0.214:2	./.	./.	./.	./.	./.
chr10	18138629	rs145296111	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,126:31:146:0.869:2	0/1:13,101:31:114:0.886:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	18138639	rs71497223	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:132,9:32:142:0.064:2	0/1:102,6:30:108:0.056:2	0/1:2,4:32:6:0.667:2	0/1:2,11:32:13:0.846:2	0/1:0,14:31:14:1.00:2	0/1:152,7:32:159:0.044:2	0/1:1,15:32:16:0.938:2	0/1:0,23:31:23:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,9:30:9:1.00:2
chr10	18138656	rs71497224	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,3:29:3:1.00:2	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.
chr10	18138665	rs71497225	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,3:21:3:1.00:2	./.	./.	./.	./.	./.	./.
chr10	18141918	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,89:32:189:0.471:2	./.	./.	./.	./.	./.	./.	./.
chr10	18159846	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,60:33:135:0.444:2	./.	0/1:76,62:32:138:0.449:2	./.	./.	0/1:74,63:33:137:0.460:2	./.	./.
chr10	18196593	rs151100905	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:29:3:1.00:2	./.	./.	0/1:2,4:33:6:0.667:2	./.	./.
chr10	18199267	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,63:32:150:0.420:2	./.	0/1:84,53:31:137:0.387:2	./.	./.	0/1:76,62:32:138:0.449:2	./.	./.
chr10	18242304	rs691112	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,41:32:41:1.00:2	0/1:1,4:32:5:0.800:2	0/1:0,94:32:94:1.00:2	0/1:27,23:31:50:0.460:2	0/1:0,74:32:74:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,63:33:63:1.00:2	0/1:0,54:33:54:1.00:2	0/1:0,73:32:73:1.00:2
chr10	18242311	rs10764176	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,31:32:76:0.408:2	./.	./.	0/1:33,28:33:61:0.459:2	0/1:27,27:33:54:0.500:2	0/1:41,30:31:71:0.423:2
chr10	18254587	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,31:33:59:0.525:2	./.	./.
chr10	18254595	rs62619938	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,17:30:31:0.548:2	./.	./.	./.	0/1:20,18:32:38:0.474:2	./.
chr10	18254606	rs691513	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,22:29:53:0.415:2	0/1:20,17:29:37:0.459:2	./.	0/1:15,10:30:25:0.400:2	0/1:22,16:29:38:0.421:2	./.	./.	0/1:27,20:30:47:0.426:2
chr10	18266989	rs2478568	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,28:31:59:0.475:2	0/1:23,9:31:32:0.281:2	0/1:18,17:31:35:0.486:2	0/1:7,8:32:15:0.533:2	0/1:24,13:32:37:0.351:2	0/1:21,23:33:44:0.523:2	0/1:16,15:32:31:0.484:2	0/1:0,58:32:58:1.00:2
chr10	18270341	rs72778328	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,41:30:77:0.532:2
chr10	18280214	rs59434947	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,4:26:20:0.200:2	./.	./.	./.
chr10	18439808	rs74120235	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,6:31:12:0.500:2	0/1:12,3:31:15:0.200:2	./.	0/1:1,9:34:10:0.900:2	./.	./.
chr10	18439906	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,4:34:91:0.044:2	./.	./.	./.	./.	./.	./.	./.
chr10	18807333	rs138423466	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:20,23:31:43:0.535:2	0/1:16,4:33:20:0.200:2	0/1:2,8:31:10:0.800:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	18827167	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,6:34:132:0.045:2	./.	./.
chr10	18828191	rs143060134	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,27:33:64:0.422:2
chr10	18828371	rs2228645	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:33,32:31:65:0.492:2	0/1:26,14:31:40:0.350:2	./.	./.	./.	./.	./.	0/1:3,94:31:97:0.969:2	./.	0/1:49,24:32:74:0.329:2	./.
chr10	18828635	rs58225473	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,20:31:50:0.408:2	0/1:12,8:31:20:0.400:2	0/1:1,4:32:5:0.800:2	0/1:23,32:32:55:0.582:2	./.	./.	./.	./.	./.	0/1:28,27:32:55:0.491:2	0/1:16,10:30:26:0.385:2
chr10	18840772	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:33:155:0.026:2	./.	./.
chr10	19492702	rs16918344	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,64:29:142:0.451:2	./.	./.	./.	./.	./.	./.
chr10	19493309	rs10508578	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,55:31:125:0.440:2	./.	./.	./.	./.	./.	./.
chr10	19493993	rs4601653	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,32:32:62:0.516:2	./.	./.	./.	./.	./.	./.
chr10	19498278	rs2358355	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,42:32:42:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,5:31:5:1.00:2	./.	0/1:16,12:32:28:0.429:2	0/1:0,45:31:45:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,37:32:37:1.00:2	0/1:32,31:31:63:0.492:2
chr10	19620407	rs7100382	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,134:33:134:1.00:2	0/1:1,75:32:76:0.987:2	0/1:14,11:33:25:0.440:2	0/1:0,164:33:164:1.00:2	0/1:99,80:32:179:0.447:2	./.	./.	0/1:92,81:33:173:0.468:2	0/1:109,65:34:174:0.374:2	0/1:0,158:33:158:1.00:2	0/1:1,162:33:163:0.994:2
chr10	19620439	rs7100403	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,10:30:23:0.435:2	0/1:1,160:30:161:0.994:2	0/1:110,73:30:183:0.399:2	./.	./.	0/1:92,87:29:179:0.486:2	0/1:101,70:32:171:0.409:2	0/1:0,161:30:161:1.00:2	0/1:1,151:30:152:0.993:2
chr10	19636779	rs76551926	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,47:32:87:0.540:2	./.
chr10	19636813	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:31:144:0.028:2	./.	./.	./.
chr10	19636869	rs1609746	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,7:31:10:0.700:2	0/1:0,80:30:80:1.00:2	0/1:44,34:30:78:0.436:2	./.	./.	0/1:63,29:30:92:0.315:2	0/1:49,35:32:84:0.417:2	0/1:0,58:30:58:1.00:2	0/1:1,98:31:100:0.990:2
chr10	19641035	rs10827306	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,10:34:20:0.500:2	0/1:2,167:33:169:0.988:2	0/1:91,69:33:160:0.431:2	./.	./.	0/1:84,94:33:178:0.528:2	0/1:84,90:33:174:0.517:2	0/1:0,115:33:115:1.00:2	0/1:0,141:33:141:1.00:2
chr10	19641055	rs190271447	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,7:32:17:0.412:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	19676553	rs12773592	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,14:32:19:0.737:2	./.	./.	./.	./.	0/1:50,59:32:109:0.541:2	./.	./.	./.
chr10	19676561	rs12771333	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,13:31:18:0.722:2	./.	./.	./.	./.	0/1:50,55:30:105:0.524:2	./.	./.	./.
chr10	19678449	rs78832888	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,57:29:130:0.438:2	./.	./.	./.	./.	./.
chr10	19678497	rs10763975	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,110:32:111:0.991:2	0/1:0,64:32:64:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,92:32:92:1.00:2	0/1:77,60:32:137:0.438:2	0/1:84,75:31:159:0.472:2	./.	0/1:0,153:32:153:1.00:2	0/1:72,49:32:121:0.405:2	0/1:0,89:32:89:1.00:2	0/1:0,96:33:96:1.00:2
chr10	19678499	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,9:31:188:0.048:2	./.	./.	./.	./.
chr10	19780463	rs16918863	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:9,19:33:28:0.679:2	0/1:9,6:32:15:0.400:2	./.	./.	./.	./.	./.	0/1:37,3:32:40:0.075:2	./.	./.	./.
chr10	19780543	rs10827499	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:29,7:32:36:0.194:2	0/1:15,7:32:22:0.318:2	./.	./.	./.	./.	0/1:0,34:31:34:1.00:2	0/1:35,18:31:53:0.340:2	0/1:3,33:32:36:0.917:2	0/1:11,17:32:28:0.607:2	./.
chr10	19787418	rs12256835	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:38,47:33:85:0.553:2	0/1:31,27:33:58:0.466:2	./.	./.	0/1:35,32:32:67:0.478:2	./.	./.	0/1:54,60:32:114:0.526:2	./.	./.	./.
chr10	19820255	rs41276112	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,47:30:98:0.480:2	./.	./.	./.	./.	./.
chr10	19884264	rs10827628	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,125:29:127:1.00:2	0/1:1,75:29:77:0.987:2	0/1:0,24:30:24:1.00:2	0/1:79,62:28:142:0.440:2	0/1:6,125:29:132:0.954:2	0/1:1,149:29:151:0.993:2	./.	./.	0/1:82,75:30:158:0.478:2	0/1:3,104:28:109:0.972:2	0/1:0,112:29:115:1.00:2
chr10	20106038	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,9:32:14:0.643:2	./.
chr10	20357183	rs7072650	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,26:32:49:0.531:2	./.	0/1:23,28:32:51:0.549:2	./.	./.	0/1:27,36:33:63:0.571:2	./.	./.
chr10	20500592	rs16920092	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,165:32:167:0.988:2	0/1:78,80:33:158:0.506:2	./.	0/1:104,96:33:200:0.480:2	./.	0/1:88,56:33:144:0.389:2	./.
chr10	20506418	rs3817405	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:32:55:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,4:32:4:1.00:2	0/1:39,32:31:71:0.451:2	0/1:0,45:31:45:1.00:2	0/1:32,25:31:57:0.439:2	0/1:30,22:32:52:0.423:2	0/1:0,61:32:61:1.00:2	0/1:39,27:33:67:0.409:2	0/1:18,34:33:52:0.654:2	0/1:1,69:32:70:0.986:2
chr10	20534333	rs2778979	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:28:65:1.00:2	0/1:0,39:28:39:1.00:2	0/1:0,4:27:4:1.00:2	0/1:0,98:28:98:1.00:2	0/1:0,92:28:92:1.00:2	0/1:0,98:28:98:1.00:2	0/1:1,88:28:89:0.989:2	0/1:0,122:28:122:1.00:2	0/1:0,84:29:85:1.00:2	0/1:0,68:28:68:1.00:2	0/1:0,72:27:72:1.00:2
chr10	21108377	rs1006363	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,52:31:104:0.500:2	0/1:36,25:32:61:0.410:2	0/1:15,8:32:23:0.348:2	0/1:62,62:31:124:0.500:2	0/1:53,48:31:101:0.475:2	0/1:68,64:31:132:0.485:2	./.	./.	./.	0/1:89,49:31:138:0.355:2	./.
chr10	21112137	rs4748728	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,14:33:30:0.467:2
chr10	21129675	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:32:68:0.059:2	./.	./.	./.	./.
chr10	21134282	rs41277370	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,17:33:54:0.315:2
chr10	21139389	rs4025981	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,49:33:97:0.505:2
chr10	21414892	rs625223	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,46:32:71:0.648:2	0/1:22,23:32:45:0.511:2	./.	0/1:44,44:32:88:0.500:2	0/1:2,50:32:52:0.962:2	0/1:42,40:33:82:0.488:2	./.	./.	0/1:40,53:33:93:0.570:2	./.	./.
chr10	21415006	rs11591355	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,12:28:27:0.444:2	./.	./.	./.	./.	./.	./.
chr10	21805480	rs201836118	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:17,4:33:21:0.190:2	./.	0/1:38,7:33:45:0.156:2	0/1:34,13:33:48:0.277:2	0/1:32,9:33:41:0.220:2	0/1:41,6:28:47:0.128:2	./.	0/1:36,5:33:41:0.122:2	./.	./.
chr10	21805486	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:21,3:33:24:0.125:2	./.	0/1:44,4:32:48:0.083:2	0/1:43,6:28:49:0.122:2	0/1:40,4:31:44:0.091:2	./.	./.	0/1:47,4:30:51:0.078:2	./.	./.
chr10	21806832	rs946711	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,5:28:20:0.250:2	0/1:2,4:29:6:0.667:2	./.	0/1:15,12:30:27:0.444:2	0/1:14,8:30:22:0.364:2	0/1:0,24:29:24:1.00:2	0/1:16,12:29:28:0.429:2	./.	./.	./.	./.
chr10	21827796	rs1802669	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,26:32:49:0.531:2	0/1:16,10:32:26:0.385:2	./.	0/1:25,22:31:47:0.468:2	0/1:30,26:32:56:0.464:2	0/1:0,51:31:51:1.00:2	0/1:27,20:33:47:0.426:2	./.	./.	./.	0/1:47,29:33:76:0.382:2
chr10	21845854	rs185388808	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,26:31:61:0.426:2	./.	./.	./.	./.	./.
chr10	21906135	rs146946726	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,88:33:169:0.521:2	./.	./.	./.	./.
chr10	22002732	rs34551826	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,32:33:73:0.438:2	./.	./.
chr10	22048330	rs9045	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:41,21:33:62:0.339:2	0/1:22,25:32:47:0.532:2	./.	./.	./.	./.	./.	0/1:1,59:31:60:0.983:2	0/1:38,22:32:60:0.367:2	./.	./.
chr10	22839628	rs2230469	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,7:33:12:0.583:2	0/1:92,63:33:155:0.406:2	0/1:48,35:33:83:0.422:2	0/1:52,50:33:102:0.490:2	0/1:53,35:32:88:0.398:2	0/1:85,44:33:129:0.341:2	0/1:0,107:34:107:1.00:2	0/1:63,67:34:130:0.515:2	0/1:94,86:33:180:0.478:2
chr10	23003226	rs1132816	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:21,23:31:44:0.523:2	0/1:18,21:30:39:0.538:2	./.	./.	./.	./.	0/1:68,42:30:110:0.382:2	0/1:91,63:29:155:0.409:2	0/1:38,44:32:83:0.537:2	./.	./.
chr10	23290952	rs12259839	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,90:31:184:0.489:2	0/1:94,56:30:151:0.373:2	./.	./.	./.	./.	./.
chr10	23297252	rs10828395	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,32:31:68:0.471:2	0/1:30,24:32:54:0.444:2	./.	./.	./.	./.
chr10	23297301	rs11817610	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:30:7:1.00:2	0/1:3,54:31:57:0.947:2	0/1:25,19:31:44:0.432:2	./.	0/1:16,15:30:32:0.484:2	0/1:0,47:30:47:1.00:2	0/1:1,77:32:78:0.987:2	0/1:0,54:31:54:1.00:2	0/1:0,88:31:89:1.00:2
chr10	23297860	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,5:27:121:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr10	23408278	rs7427	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,67:33:69:0.971:2	0/1:1,57:33:58:0.983:2	0/1:5,6:33:11:0.545:2	0/1:51,53:33:104:0.510:2	./.	0/1:52,42:32:94:0.447:2	./.	./.	0/1:57,66:34:123:0.537:2	0/1:1,95:33:96:0.990:2	0/1:73,37:33:110:0.336:2
chr10	23482635	rs7918487	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:30:17:1.00:2	0/1:0,9:31:9:1.00:2	./.	0/1:24,13:30:37:0.351:2	0/1:8,12:32:20:0.600:2	0/1:9,15:31:24:0.625:2	0/1:10,16:33:26:0.615:2	0/1:13,11:31:24:0.458:2	./.	0/1:11,6:32:17:0.353:2	0/1:15,22:30:37:0.595:2
chr10	23556110	rs4382803	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,5:33:9:0.556:2	./.	./.	0/1:12,3:32:15:0.200:2	./.	./.	./.
chr10	23633566	rs2036917	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,50:31:51:0.980:2	0/1:0,30:31:30:1.00:2	0/1:6,6:30:12:0.500:2	0/1:58,41:31:99:0.414:2	0/1:48,50:30:98:0.510:2	./.	0/1:0,81:31:81:1.00:2	0/1:32,48:31:80:0.600:2	./.	0/1:32,30:31:62:0.484:2	0/1:29,34:31:63:0.540:2
chr10	23729523	rs1511822	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,30:30:57:0.526:2
chr10	23730261	rs190447538	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,50:32:111:0.450:2	./.	./.	./.
chr10	24564653	rs11014002	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,65:31:132:0.492:2
chr10	24669877	rs17506606	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	0/1:0,12:32:12:1.00:2	0/1:10,11:34:21:0.524:2	./.	./.	./.	./.	0/1:19,16:31:35:0.457:2
chr10	24721946	rs2274831	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,11:30:18:0.611:2	./.	0/1:22,53:30:75:0.707:2	./.	0/1:47,50:29:97:0.515:2	./.	./.	./.	./.
chr10	24762465	rs3748215	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,51:29:134:0.381:2	./.	0/1:89,75:29:164:0.457:2	./.	./.
chr10	24790393	rs1112284	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,46:30:47:0.979:2	0/1:0,39:29:39:1.00:2	./.	0/1:50,41:30:91:0.451:2	./.	./.	./.	0/1:1,128:29:130:0.992:2	0/1:46,31:32:77:0.403:2	./.	./.
chr10	24813454	rs10828663	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,49:30:50:0.980:2	0/1:0,18:32:18:1.00:2	./.	0/1:37,32:31:69:0.464:2	./.	./.	./.	./.	0/1:30,32:31:62:0.516:2	0/1:17,29:31:46:0.630:2	./.
chr10	24833137	rs2250411	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,11:31:27:0.407:2	./.	0/1:14,10:31:24:0.417:2	0/1:27,13:32:40:0.325:2	0/1:0,30:32:30:1.00:2	0/1:21,11:32:32:0.344:2	0/1:17,20:30:37:0.541:2
chr10	24873369	rs1127893	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,55:31:114:0.482:2	0/1:27,23:32:50:0.460:2	0/1:4,8:32:12:0.667:2	0/1:41,30:33:71:0.423:2	0/1:31,44:32:75:0.587:2	0/1:1,88:32:89:0.989:2	./.	0/1:65,61:32:126:0.484:2	./.	0/1:49,44:33:93:0.473:2	./.
chr10	24873452	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:32:184:0.022:2	./.	./.
chr10	24873587	.	G	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:161,13:31:174:0.075:2	0/1:109,4:32:113:0.035:2	./.	0/1:189,4:33:193:0.021:2	0/1:173,10:32:183:0.055:2	0/1:174,7:32:182:0.039:2	0/1:178,9:31:187:0.048:2	0/1:173,5:32:178:0.028:2	0/1:183,4:34:187:0.021:2	./.	0/1:180,6:30:186:0.032:2
chr10	24874496	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,6:32:143:0.042:2	./.	./.	./.	./.
chr10	24874828	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,13:30:199:0.065:2	./.	./.	0/1:186,9:28:195:0.046:2
chr10	24874970	rs201814092	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,60:30:120:0.500:2	./.	./.	./.	./.	./.	./.
chr10	24880837	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,3:31:12:0.250:2	0/1:110,8:28:118:0.068:2	./.	./.	0/1:130,9:30:139:0.065:2	./.	./.	./.	./.
chr10	24880932	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,5:35:74:0.068:2	./.	./.	0/1:49,6:34:55:0.109:2	./.
chr10	24884065	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:126,4:31:130:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr10	24884079	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:34:191:0.021:2
chr10	24884082	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:33:192:0.021:2
chr10	24885736	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:33:187:0.021:2	./.	./.	./.	./.	./.
chr10	24885785	rs111419738	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,5:30:151:0.033:2	./.	./.	./.	./.	./.
chr10	24885788	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,5:27:144:0.035:2	./.	./.	./.	./.	./.
chr10	24889622	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:47,6:32:53:0.113:2	./.	0/1:131,4:30:135:0.030:2	./.	./.	./.	./.	0/1:126,5:31:131:0.038:2	./.	./.
chr10	24889821	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:76,5:31:81:0.062:2	./.	./.	./.	./.	0/1:130,6:28:136:0.044:2	./.	0/1:163,5:32:168:0.030:2	./.	./.
chr10	24890978	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,22:32:59:0.373:2	0/1:24,18:32:42:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	24908449	rs144055293	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,5:32:140:0.036:2	./.	./.
chr10	24908528	rs61758699	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,3:32:48:0.063:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	24908590	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,6:33:78:0.077:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:31:102:0.039:2
chr10	24908656	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,5:32:69:0.072:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:31:101:0.040:2
chr10	24908686	rs3748222	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,33:33:66:0.500:2	0/1:23,28:32:52:0.549:2	0/1:7,7:32:14:0.500:2	0/1:45,41:32:86:0.477:2	0/1:33,16:32:49:0.327:2	0/1:2,73:31:75:0.973:2	./.	0/1:41,45:31:86:0.523:2	./.	./.	./.
chr10	24908949	rs143885641	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,59:32:87:0.678:2	./.	./.	./.	./.	./.	./.	./.
chr10	24923998	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:34:83:0.048:2	./.	./.	./.
chr10	24924010	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,4:33:90:0.044:2	./.	./.	./.	./.	./.	./.	./.
chr10	24959275	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:135,4:31:139:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr10	24959276	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:135,4:32:139:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr10	24959322	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,4:32:65:0.062:2	./.	./.	./.	./.	./.	./.	./.
chr10	25241502	rs143356584	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,68:29:131:0.519:2	./.	./.	./.	./.	./.	./.	./.
chr10	25312348	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:32:172:0.023:2
chr10	25312689	rs4748997	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,9:32:21:0.429:2	0/1:9,8:32:17:0.471:2	./.	0/1:0,28:33:28:1.00:2	0/1:10,8:30:18:0.444:2	0/1:9,15:32:24:0.625:2	0/1:0,14:33:14:1.00:2	./.	0/1:10,18:32:28:0.643:2	./.	./.
chr10	25312868	rs41279890	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,48:30:85:0.565:2	./.	./.	./.
chr10	25313348	rs41279894	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,9:28:20:0.450:2	./.	./.	./.
chr10	25313818	rs7086282	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,8:32:16:0.500:2	./.	./.	0/1:0,17:32:17:1.00:2	0/1:5,12:31:17:0.706:2	0/1:8,7:31:15:0.467:2	0/1:0,19:32:19:1.00:2	0/1:6,14:30:20:0.700:2	0/1:8,6:32:14:0.429:2	./.	./.
chr10	25314538	rs12249889	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,19:33:43:0.442:2	0/1:12,12:31:24:0.500:2	./.	0/1:0,46:32:46:1.00:2	0/1:21,17:31:38:0.447:2	0/1:25,16:31:41:0.390:2	0/1:0,38:32:38:1.00:2	./.	0/1:13,14:32:27:0.519:2	./.	./.
chr10	25314637	rs12256642	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,33:30:82:0.402:2	0/1:19,15:30:34:0.441:2	0/1:3,5:29:8:0.625:2	0/1:0,76:30:76:1.00:2	0/1:45,33:29:78:0.423:2	0/1:54,48:29:102:0.471:2	0/1:0,80:30:80:1.00:2	./.	0/1:53,28:31:81:0.346:2	./.	./.
chr10	25464667	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	25701341	rs2480345	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,111:32:111:1.00:2	0/1:2,58:33:60:0.967:2	0/1:18,9:33:27:0.333:2	0/1:91,79:33:170:0.465:2	0/1:0,153:32:153:1.00:2	0/1:0,146:32:146:1.00:2	0/1:104,71:33:175:0.406:2	0/1:1,178:33:179:0.994:2	0/1:90,66:33:156:0.423:2	0/1:3,129:32:132:0.977:2	0/1:4,123:33:127:0.969:2
chr10	25878055	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:31:62:0.065:2	./.	./.
chr10	25888180	rs10828833	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,16:32:16:1.00:2	./.	0/1:11,7:30:18:0.389:2	0/1:13,4:31:17:0.235:2	0/1:0,23:32:23:1.00:2	./.	./.	./.
chr10	26286159	rs12257119	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,53:33:101:0.525:2	./.
chr10	26310470	rs35010955	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,39:31:107:0.364:2	./.	./.	./.	./.	./.	./.
chr10	26310506	rs34067308	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,34:31:96:0.354:2	./.	./.	./.	./.	./.	./.
chr10	26355906	rs3824700	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,11:32:32:0.344:2	0/1:5,8:32:13:0.615:2	./.	./.	0/1:0,13:31:13:1.00:2	0/1:12,11:32:23:0.478:2	0/1:16,5:33:21:0.238:2	./.	0/1:14,21:33:35:0.600:2	0/1:16,14:32:30:0.467:2	0/1:27,23:32:50:0.460:2
chr10	26355992	rs3824699	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:33:26:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,5:31:5:1.00:2	0/1:13,33:32:46:0.717:2	0/1:0,10:32:10:1.00:2	0/1:27,13:32:40:0.325:2	0/1:1,19:32:20:0.950:2	0/1:21,24:33:45:0.533:2	0/1:0,49:33:49:1.00:2	0/1:11,11:31:22:0.500:2	0/1:29,11:33:40:0.275:2
chr10	26357747	rs35379457	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,13:32:34:0.382:2	0/1:20,9:31:29:0.310:2	./.	./.	0/1:0,39:30:39:1.00:2	0/1:35,27:30:62:0.435:2	0/1:26,21:31:47:0.447:2	./.	0/1:37,25:32:62:0.403:2	0/1:39,11:32:50:0.220:2	0/1:45,33:31:78:0.423:2
chr10	26357748	rs3817420	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,29:32:29:1.00:2	0/1:1,9:32:10:0.900:2	0/1:43,27:31:70:0.386:2	0/1:0,39:30:39:1.00:2	0/1:36,27:30:63:0.429:2	0/1:0,47:31:47:1.00:2	0/1:50,27:32:77:0.351:2	0/1:0,62:32:62:1.00:2	0/1:38,13:31:51:0.255:2	0/1:45,33:31:78:0.423:2
chr10	26385578	rs41279908	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,48:32:110:0.436:2	./.
chr10	26414458	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:32:122:0.033:2	./.	./.
chr10	26434455	rs33947968	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,16:31:39:0.410:2	./.	./.	./.	./.	./.	./.
chr10	26446312	rs3758449	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:74,47:32:121:0.388:2	0/1:37,37:32:74:0.500:2	0/1:13,7:31:20:0.350:2	./.	0/1:0,90:30:90:1.00:2	0/1:84,67:31:151:0.444:2	0/1:67,63:32:130:0.485:2	./.	0/1:53,79:32:132:0.598:2	0/1:52,62:31:114:0.544:2	0/1:77,57:32:134:0.425:2
chr10	26462790	rs3740232	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:26,27:32:53:0.509:2	0/1:15,10:33:25:0.400:2	0/1:5,3:33:8:0.375:2	./.	0/1:20,15:31:35:0.429:2	0/1:38,27:31:65:0.415:2	0/1:32,12:32:44:0.273:2	./.	./.	./.	0/1:41,31:32:72:0.431:2
chr10	26463043	rs3740231	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:37,27:32:64:0.422:2	0/1:27,16:31:43:0.372:2	0/1:5,3:31:8:0.375:2	./.	0/1:0,18:31:19:1.00:2	0/1:33,24:29:57:0.421:2	0/1:14,12:32:26:0.462:2	./.	./.	./.	0/1:29,32:31:61:0.525:2
chr10	26463130	rs1999240	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:32:87:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,12:31:12:1.00:2	0/1:44,37:31:81:0.457:2	0/1:0,63:31:63:1.00:2	0/1:48,38:31:86:0.442:2	0/1:0,66:32:66:1.00:2	0/1:41,41:32:82:0.500:2	0/1:45,41:32:86:0.477:2	./.	0/1:45,45:31:90:0.500:2
chr10	26505822	rs2839671	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,9:32:17:0.529:2	0/1:11,6:31:17:0.353:2	./.	./.	0/1:8,12:34:20:0.600:2	./.	0/1:15,11:32:26:0.423:2
chr10	26534937	rs2839677	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,34:32:71:0.479:2	./.	./.	./.	./.	./.	./.
chr10	26559571	rs1556234	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,38:33:90:0.422:2	./.	./.	./.	./.	./.	./.
chr10	26575391	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:33:138:0.029:2	./.	./.
chr10	26789919	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,7:29:151:0.046:2	./.
chr10	26789974	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,10:17:110:0.091:2	./.	./.	./.	./.
chr10	26789980	rs200684484	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:73,10:22:83:0.120:2	./.	./.	0/1:92,19:18:111:0.171:2	0/1:101,22:14:123:0.179:2	0/1:98,26:17:124:0.210:2	0/1:104,22:15:126:0.175:2	0/1:96,20:14:116:0.172:2	./.	0/1:65,18:17:83:0.217:2	./.
chr10	27303605	rs2274741	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,45:31:76:0.592:2	./.	./.	./.	./.	./.	./.	./.
chr10	27317840	rs10829163	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,37:32:85:0.435:2	./.	./.	./.	./.	./.	./.	./.
chr10	27322306	rs146819984	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:32:10:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	27326145	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:30:99:0.040:2	./.	./.	./.	./.	./.
chr10	27326147	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:31:101:0.040:2	./.	./.	./.	./.	./.
chr10	27326148	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:31:101:0.040:2	./.	./.	./.	./.	./.
chr10	27349268	rs149655759	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,36:28:85:0.424:2	./.	./.	./.	./.	./.	./.	./.
chr10	27381349	rs2297145	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,12:32:37:0.324:2	./.	./.	./.	./.	./.	./.	./.
chr10	27382671	rs368037668	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,3:31:18:0.167:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	27389197	rs7897309	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,4:28:5:0.800:2	./.	./.	0/1:0,4:30:4:1.00:2	0/1:0,2:27:2:1.00:2	0/1:0,2:29:2:1.00:2	./.	0/1:0,3:32:3:1.00:2	./.	./.	0/1:0,2:29:2:1.00:2
chr10	27434483	rs2274634	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,13:32:45:0.295:2	./.	./.	./.	./.	./.	./.	./.
chr10	27436566	rs62622019	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,99:33:194:0.510:2	./.	./.	./.	./.	./.	./.	./.
chr10	27443083	rs2274637	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,5:28:136:0.037:2	./.	./.	./.	./.
chr10	27447563	rs200991902	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:31:111:0.036:2	./.	./.	./.	./.	./.
chr10	27459670	rs1981296	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:14,15:31:29:0.517:2	0/1:10,11:32:21:0.524:2	0/1:0,6:31:6:1.00:2	./.	0/1:1,21:30:22:0.955:2	0/1:0,18:30:18:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,16:30:16:1.00:2	0/1:19,8:32:27:0.296:2	0/1:0,20:31:20:1.00:2	0/1:1,31:32:32:0.969:2
chr10	27459746	rs3802526	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,17:32:31:0.548:2	./.	./.	./.	./.	./.	./.	./.
chr10	27475444	rs10741130	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:26,32:30:58:0.552:2	0/1:8,16:28:24:0.667:2	0/1:4,5:29:9:0.556:2	./.	0/1:1,46:28:47:0.979:2	0/1:0,72:28:72:1.00:2	0/1:0,57:29:57:1.00:2	0/1:2,66:28:68:0.971:2	0/1:38,44:29:82:0.537:2	0/1:0,63:29:63:1.00:2	0/1:0,78:28:78:1.00:2
chr10	27497191	rs7918793	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,48:32:108:0.444:2	./.	./.	./.	./.	./.	./.	./.
chr10	27508758	rs10764690	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:44,49:28:94:0.527:2	0/1:34,26:29:60:0.433:2	0/1:10,14:29:24:0.583:2	./.	0/1:0,102:28:102:1.00:2	0/1:0,124:28:124:1.00:2	0/1:0,105:29:105:1.00:2	0/1:3,129:29:132:0.977:2	0/1:83,77:30:160:0.481:2	0/1:0,92:28:92:1.00:2	0/1:1,126:29:127:0.992:2
chr10	27687225	rs2505323	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:33:54:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,14:32:14:1.00:2	0/1:36,35:33:71:0.493:2	0/1:0,45:32:45:1.00:2	0/1:0,76:32:76:1.00:2	0/1:19,28:33:47:0.596:2	0/1:1,69:32:70:0.986:2	0/1:0,82:33:82:1.00:2	0/1:32,30:33:62:0.484:2	0/1:50,43:34:93:0.462:2
chr10	27687285	rs199682342	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,4:33:49:0.082:2	./.	./.	./.	./.	./.	./.	./.
chr10	27687463	rs61739217	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,12:30:19:0.632:2	./.	./.	./.
chr10	27687775	rs1638630	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:33:52:1.00:2	0/1:0,25:33:25:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,67:33:67:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,28:32:29:1.00:2	0/1:0,60:33:60:1.00:2	0/1:0,64:33:64:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,77:33:77:1.00:2
chr10	27687965	rs2505327	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:29:82:1.00:2	0/1:0,58:29:58:1.00:2	0/1:1,4:31:5:0.800:2	0/1:57,43:29:100:0.430:2	0/1:1,62:29:63:0.984:2	0/1:0,99:29:99:1.00:2	0/1:43,37:30:80:0.463:2	0/1:1,93:29:94:0.989:2	0/1:0,94:30:94:1.00:2	0/1:49,51:28:100:0.510:2	0/1:65,72:29:137:0.526:2
chr10	27687994	rs2484173	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:31:76:1.00:2	0/1:0,51:29:51:1.00:2	0/1:0,8:29:8:1.00:2	0/1:56,36:30:92:0.391:2	0/1:1,59:29:60:0.983:2	0/1:0,82:29:82:1.00:2	0/1:39,35:29:74:0.473:2	0/1:0,97:30:97:1.00:2	0/1:0,86:30:86:1.00:2	0/1:40,47:30:87:0.540:2	0/1:56,64:30:120:0.533:2
chr10	27688109	rs2429485	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,12:31:12:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,2:32:2:1.00:2	0/1:7,7:31:14:0.500:2	0/1:0,10:31:10:1.00:2	0/1:1,13:28:14:0.929:2	0/1:5,5:31:10:0.500:2	0/1:0,16:31:16:1.00:2	0/1:0,16:32:16:1.00:2	0/1:7,6:31:13:0.462:2	0/1:5,8:33:13:0.615:2
chr10	27692279	rs2484180	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,28:30:28:1.00:2	0/1:0,17:28:17:1.00:2	./.	0/1:8,19:26:27:0.704:2	0/1:25,16:28:41:0.390:2	0/1:9,7:27:16:0.438:2	0/1:11,6:27:17:0.353:2	./.	0/1:2,36:30:38:0.947:2	0/1:22,16:30:38:0.421:2	0/1:33,20:28:53:0.377:2
chr10	27702169	rs6482625	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,55:30:116:0.474:2	./.	./.	0/1:55,48:30:103:0.466:2	./.	./.	0/1:43,53:30:96:0.552:2	0/1:62,46:29:108:0.426:2
chr10	27702427	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:29:43:0.093:2	./.	./.	./.
chr10	27702688	rs7087552	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,16:31:51:0.314:2	0/1:80,4:32:84:0.048:2	./.	0/1:24,16:32:40:0.400:2	./.	./.	0/1:29,23:32:52:0.442:2	0/1:29,29:32:58:0.500:2
chr10	27702725	rs6482626	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,11:30:37:0.297:2	./.	./.	0/1:20,8:32:28:0.286:2	./.	./.	0/1:30,13:31:43:0.302:2	0/1:19,17:30:36:0.472:2
chr10	27702726	rs11015753	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,34:30:58:0.586:2	0/1:25,45:29:70:0.643:2	./.	0/1:1,66:30:67:0.985:2	./.	./.	./.
chr10	27702744	rs11015754	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,46:31:48:0.958:2	./.	./.	./.
chr10	27702786	rs201849238	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,6:15:24:0.250:2	./.	./.	./.	./.	./.
chr10	27964435	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:33:147:0.027:2	./.	./.	./.	./.
chr10	27964470	rs2253230	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,7:32:21:0.333:2	0/1:63,63:31:126:0.500:2	./.	./.	./.	./.	0/1:74,67:32:141:0.475:2	0/1:64,48:32:112:0.429:2	0/1:2,120:31:122:0.984:2
chr10	28023688	rs148956781	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,9:32:17:0.529:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	28149593	rs148295264	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,93:33:197:0.472:2	./.	./.	./.	./.
chr10	28151445	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:32:109:0.037:2	./.	./.	./.	./.	./.
chr10	28228865	rs7893462	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,55:29:115:0.478:2	0/1:44,25:29:69:0.362:2	0/1:0,10:29:10:1.00:2	0/1:61,81:29:142:0.570:2	0/1:63,62:28:125:0.496:2	./.	./.	0/1:0,137:29:137:1.00:2	0/1:0,166:30:166:1.00:2	0/1:55,57:30:112:0.509:2	0/1:66,77:29:144:0.538:2
chr10	28233163	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,15:13:81:0.188:2	./.	./.	./.	./.
chr10	28247860	rs61842728	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:31:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	28250610	rs147175768	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:127,22:33:149:0.148:2	0/1:88,17:33:105:0.162:2	./.	./.	0/1:95,44:32:139:0.317:2	0/1:123,58:32:181:0.320:2	0/1:144,42:32:186:0.226:2	0/1:124,59:32:183:0.322:2	0/1:146,32:33:178:0.180:2	./.	0/1:144,21:33:165:0.127:2
chr10	28250635	rs202113129	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:100,12:29:112:0.107:2	0/1:66,15:28:81:0.185:2	./.	./.	0/1:83,30:27:113:0.265:2	0/1:106,41:29:147:0.279:2	0/1:119,26:29:145:0.179:2	0/1:101,42:29:143:0.294:2	0/1:114,17:30:131:0.130:2	./.	0/1:122,16:28:139:0.116:2
chr10	28257852	rs199740026	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,16:32:105:0.152:2	./.	./.	./.	./.	0/1:165,33:33:198:0.167:2	./.	./.	./.
chr10	28257853	rs149372312	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:161,37:33:198:0.187:2	0/1:162,31:34:193:0.161:2	./.	./.	0/1:148,44:36:192:0.229:2	./.	./.
chr10	28260151	rs4405206	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,93:33:93:1.00:2	./.	./.
chr10	28378613	rs11006853	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,70:32:128:0.547:2
chr10	28378758	rs2997211	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,35:32:35:1.00:2	0/1:0,31:32:31:1.00:2	./.	0/1:0,42:32:42:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,52:31:52:1.00:2	0/1:27,30:30:57:0.526:2	0/1:37,35:31:72:0.486:2	0/1:0,47:32:47:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,46:32:46:1.00:2
chr10	28878776	rs77910453	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,9:26:96:0.094:2
chr10	29169122	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:34:139:0.029:2	./.	./.	./.	./.	./.
chr10	29169220	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:31:114:0.035:2	./.	./.
chr10	29578084	rs17851935	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,47:34:48:0.979:2	0/1:0,35:33:35:1.00:2	0/1:1,5:28:6:0.833:2	0/1:1,53:33:54:0.981:2	./.	0/1:2,53:33:55:0.964:2	0/1:6,64:33:70:0.914:2	0/1:48,48:33:97:0.500:2	0/1:1,67:33:68:0.985:2	./.	0/1:50,34:31:84:0.405:2
chr10	29578132	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:30:64:0.063:2	./.	./.	./.
chr10	29581493	rs3818551	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,15:31:28:0.536:2	0/1:97,86:30:183:0.470:2	./.	0/1:101,80:30:181:0.442:2	0/1:109,86:30:195:0.441:2	./.	0/1:82,83:32:165:0.503:2	./.	0/1:66,60:30:126:0.476:2
chr10	29581527	rs11007514	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,89:29:169:0.527:2	./.	./.	./.	./.	0/1:73,63:29:137:0.463:2
chr10	29747173	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:31:128:0.031:2	./.	./.	./.
chr10	29747417	rs1887465	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	0/1:21,18:32:39:0.462:2	./.	./.	./.	0/1:16,10:33:26:0.385:2	0/1:26,28:33:54:0.519:2
chr10	29754609	rs1057952	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,8:31:21:0.381:2	./.	./.	0/1:70,45:29:115:0.391:2	./.	./.	./.	0/1:56,58:30:114:0.509:2	0/1:82,52:29:134:0.388:2
chr10	29754644	rs7921306	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,7:29:20:0.350:2	./.	./.	0/1:53,41:28:94:0.436:2	./.	./.	./.	./.	0/1:73,48:29:121:0.397:2
chr10	29754675	rs56248456	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,31:30:67:0.463:2	./.	./.
chr10	29759225	rs11007607	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,42:29:135:0.313:2	./.
chr10	29769515	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,5:29:123:0.041:2	./.
chr10	29769705	rs143178190	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,15:30:26:0.577:2	./.	./.	./.	./.	./.	./.	./.
chr10	29779847	rs199726033	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:84,14:28:98:0.143:2	./.	0/1:12,4:29:16:0.250:2	0/1:94,15:29:109:0.138:2	0/1:63,11:30:74:0.149:2	0/1:100,7:31:107:0.065:2	0/1:67,13:28:80:0.163:2	0/1:101,12:30:113:0.106:2	./.	./.	0/1:99,10:29:109:0.092:2
chr10	29783856	rs147715501	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,7:30:112:0.063:2	0/1:108,7:27:115:0.061:2	0/1:144,11:30:155:0.071:2	0/1:109,7:30:116:0.060:2	0/1:147,6:31:153:0.039:2	./.	./.	0/1:141,7:31:148:0.047:2
chr10	29783885	rs1056782	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:33:12:0.250:2	./.	./.	0/1:133,66:32:199:0.332:2	./.	./.	./.	0/1:60,56:33:116:0.483:2	0/1:111,62:33:173:0.358:2
chr10	29783908	rs78773460	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:142,27:28:169:0.160:2	0/1:133,17:28:150:0.113:2	0/1:158,38:27:196:0.194:2	0/1:119,44:27:163:0.270:2	0/1:155,41:28:196:0.209:2	./.	./.	0/1:136,34:28:170:0.200:2
chr10	29784072	rs2368406	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:99,9:34:108:0.083:2	0/1:47,4:32:51:0.078:2	0/1:11,7:33:18:0.389:2	0/1:81,64:33:145:0.441:2	0/1:2,52:33:54:0.963:2	0/1:84,45:32:129:0.349:2	0/1:83,60:33:143:0.420:2	0/1:0,82:32:82:1.00:2	0/1:0,29:34:29:1.00:2	0/1:59,11:32:70:0.157:2	0/1:1,81:33:82:0.988:2
chr10	29784114	rs6481601	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:28:68:1.00:2	0/1:0,28:27:28:1.00:2	0/1:0,8:28:8:1.00:2	0/1:0,80:27:80:1.00:2	0/1:0,23:28:24:1.00:2	0/1:0,64:28:64:1.00:2	0/1:0,67:26:67:1.00:2	0/1:0,49:27:49:1.00:2	0/1:1,21:30:22:0.955:2	0/1:0,26:28:26:1.00:2	0/1:1,46:28:47:0.979:2
chr10	29812422	rs7070135	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,15:30:40:0.385:2	./.
chr10	29812602	rs7070678	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,67:32:133:0.504:2	./.	0/1:55,59:32:114:0.518:2	./.	./.	0/1:80,58:33:138:0.420:2	0/1:50,52:32:102:0.510:2	./.
chr10	29821089	rs17756919	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,11:28:40:0.275:2	0/1:14,6:29:20:0.300:2	0/1:21,9:30:30:0.300:2	./.	./.	0/1:12,15:30:27:0.556:2	./.	./.
chr10	29821475	rs41284748	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:23,37:32:60:0.617:2	0/1:15,18:32:33:0.545:2	0/1:5,6:32:11:0.545:2	./.	./.	./.	0/1:70,80:32:150:0.533:2	./.	./.	./.	./.
chr10	29821523	rs1328323	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,59:32:130:0.454:2	0/1:78,52:32:130:0.400:2	0/1:43,52:32:95:0.547:2	./.	./.	0/1:0,123:33:123:1.00:2	./.	./.
chr10	29822032	rs1247696	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,78:31:79:0.987:2	0/1:0,46:31:46:1.00:2	0/1:0,13:29:13:1.00:2	0/1:0,94:30:94:1.00:2	0/1:0,94:30:94:1.00:2	0/1:0,79:30:79:1.00:2	0/1:0,80:30:80:1.00:2	0/1:0,98:30:98:1.00:2	0/1:0,76:31:76:1.00:2	0/1:38,42:30:80:0.525:2	0/1:0,99:30:99:1.00:2
chr10	29822159	rs7076239	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:123,69:32:192:0.359:2	0/1:110,82:32:192:0.427:2	0/1:116,72:32:188:0.383:2	./.	./.	0/1:0,154:33:154:1.00:2	./.	./.
chr10	29833998	rs2368393	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,18:32:53:0.340:2	0/1:32,27:31:59:0.458:2	0/1:38,30:32:68:0.441:2	./.	./.	0/1:45,41:33:86:0.477:2	./.	0/1:33,16:32:49:0.327:2
chr10	29834003	rs2368392	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,17:31:52:0.327:2	0/1:29,26:31:55:0.473:2	0/1:34,33:31:67:0.493:2	./.	./.	0/1:43,41:32:84:0.488:2	./.	0/1:32,17:32:49:0.347:2
chr10	29839787	rs10160013	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,13:29:42:0.310:2	0/1:23,31:28:54:0.574:2	0/1:28,35:29:63:0.556:2	./.	./.	0/1:34,35:29:69:0.507:2	./.	0/1:30,36:27:66:0.545:2
chr10	29839798	rs17834991	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:31,22:27:53:0.415:2	0/1:22,11:28:33:0.333:2	./.	./.	./.	./.	0/1:32,27:27:59:0.458:2	./.	./.	./.	./.
chr10	29839864	rs1270874	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,50:31:119:0.420:2	0/1:25,24:30:49:0.490:2	0/1:0,20:30:20:1.00:2	0/1:0,89:30:89:1.00:2	0/1:1,131:30:132:0.992:2	0/1:0,140:30:141:1.00:2	0/1:0,147:30:147:1.00:2	0/1:81,66:30:147:0.449:2	0/1:61,74:31:135:0.548:2	0/1:0,70:30:70:1.00:2	0/1:0,118:30:119:1.00:2
chr10	29840038	rs3740003	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,76:31:143:0.531:2	0/1:86,47:30:133:0.353:2	0/1:59,39:30:98:0.398:2	./.	./.	0/1:74,67:31:142:0.475:2	./.	0/1:81,94:30:175:0.537:2
chr10	29840164	rs3740002	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,5:31:15:0.333:2	0/1:15,14:31:29:0.483:2	0/1:12,6:29:18:0.333:2	./.	./.	0/1:13,13:33:26:0.500:2	./.	0/1:18,22:31:40:0.550:2
chr10	29843833	rs1547169	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,22:32:44:0.500:2	0/1:24,12:32:36:0.333:2	0/1:27,23:30:50:0.460:2	./.	./.	0/1:26,12:32:38:0.316:2	./.	0/1:29,24:31:53:0.453:2
chr10	29891260	rs12416605	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:28,18:30:46:0.391:2	0/1:12,9:31:21:0.429:2	0/1:0,4:29:4:1.00:2	./.	./.	./.	0/1:33,27:29:60:0.450:2	./.	./.	./.	0/1:26,20:29:46:0.435:2
chr10	30306804	rs2478839	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,38:31:38:1.00:2	0/1:11,9:31:20:0.450:2	0/1:13,13:31:26:0.500:2	0/1:12,17:32:29:0.586:2	./.	./.	0/1:9,16:31:25:0.640:2	0/1:26,17:31:43:0.395:2
chr10	30316072	rs3739998	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:34:7:0.429:2	0/1:0,33:32:33:1.00:2	0/1:26,14:31:40:0.350:2	0/1:23,21:32:44:0.477:2	./.	./.	./.	0/1:30,22:32:52:0.423:2	0/1:28,42:33:70:0.600:2
chr10	30316208	rs2185724	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:19,21:32:40:0.525:2	0/1:18,10:32:28:0.357:2	0/1:1,6:33:7:0.857:2	./.	0/1:48,60:31:108:0.556:2	0/1:47,26:32:73:0.356:2	0/1:4,108:32:112:0.964:2	0/1:54,34:33:88:0.386:2	0/1:0,67:33:67:1.00:2	0/1:30,23:32:53:0.434:2	0/1:33,31:32:64:0.484:2
chr10	30316872	rs3739996	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:78,46:30:124:0.371:2	0/1:31,34:29:65:0.523:2	0/1:6,9:29:15:0.600:2	./.	0/1:93,79:29:172:0.459:2	0/1:93,50:29:143:0.350:2	0/1:1,182:29:183:0.995:2	0/1:92,81:29:173:0.468:2	0/1:1,110:30:111:0.991:2	0/1:57,56:28:113:0.496:2	0/1:66,64:28:130:0.492:2
chr10	30317073	rs9337951	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,11:31:19:0.579:2	0/1:0,143:31:143:1.00:2	0/1:77,62:31:140:0.446:2	0/1:88,86:31:174:0.494:2	./.	./.	./.	0/1:71,64:32:135:0.474:2	0/1:98,82:31:180:0.456:2
chr10	30317826	rs7920682	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:26,24:30:50:0.480:2	0/1:23,29:29:53:0.558:2	./.	./.	0/1:47,22:29:69:0.319:2	0/1:34,42:29:76:0.553:2	0/1:2,104:29:106:0.981:2	0/1:22,46:29:68:0.676:2	0/1:0,77:31:77:1.00:2	0/1:26,26:29:52:0.500:2	0/1:48,38:28:86:0.442:2
chr10	30317838	rs7920686	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,19:30:39:0.487:2	0/1:22,25:30:47:0.532:2	./.	./.	0/1:44,18:30:62:0.290:2	0/1:33,40:30:73:0.548:2	0/1:1,92:30:93:0.989:2	0/1:25,39:29:64:0.609:2	0/1:0,64:31:64:1.00:2	0/1:24,21:29:45:0.467:2	0/1:43,31:28:74:0.419:2
chr10	30317949	rs2478835	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,7:30:9:0.778:2	0/1:0,53:29:53:1.00:2	0/1:39,26:29:65:0.400:2	0/1:33,31:29:64:0.484:2	./.	./.	./.	0/1:29,33:30:62:0.532:2	0/1:24,27:29:51:0.529:2
chr10	30318345	rs11813359	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,66:32:138:0.478:2	./.	0/1:52,52:33:105:0.500:2	./.	./.	./.
chr10	30629226	rs1047991	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:43,31:32:74:0.419:2	0/1:27,23:32:50:0.460:2	./.	./.	0/1:51,23:31:74:0.311:2	0/1:52,50:31:102:0.490:2	0/1:54,38:31:92:0.413:2	./.	0/1:2,100:32:102:0.980:2	./.	./.
chr10	30728101	rs1042058	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,43:30:90:0.478:2	0/1:32,23:28:55:0.418:2	0/1:0,10:28:10:1.00:2	0/1:59,60:30:119:0.504:2	./.	0/1:0,107:29:107:1.00:2	0/1:1,120:29:121:0.992:2	./.	0/1:0,131:30:131:1.00:2	0/1:0,90:30:90:1.00:2	0/1:0,156:29:156:1.00:2
chr10	30728250	rs2907	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,22:33:50:0.440:2	0/1:19,13:33:32:0.406:2	0/1:0,7:33:7:1.00:2	0/1:29,42:33:71:0.592:2	./.	0/1:3,50:33:53:0.943:2	0/1:1,45:33:46:0.978:2	./.	0/1:0,47:33:47:1.00:2	0/1:1,58:33:59:0.983:2	0/1:1,92:33:93:0.989:2
chr10	30749728	rs376945200	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,26:32:56:0.464:2
chr10	30901756	rs9954	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,40:32:100:0.400:2	0/1:53,18:32:71:0.254:2	0/1:0,10:31:10:1.00:2	0/1:94,24:32:118:0.203:2	0/1:2,42:32:44:0.955:2	./.	./.	./.	0/1:86,51:32:137:0.372:2	0/1:56,47:32:103:0.456:2	0/1:1,125:32:126:0.992:2
chr10	30918549	rs201069868	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:100,21:33:122:0.174:2	0/1:56,14:33:70:0.200:2	0/1:13,4:33:17:0.235:2	0/1:125,30:31:155:0.194:2	./.	0/1:136,32:32:169:0.190:2	0/1:108,15:32:123:0.122:2	0/1:149,11:33:160:0.069:2	0/1:121,38:31:159:0.239:2	./.	0/1:118,12:33:130:0.092:2
chr10	30918597	rs74551644	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:102,21:33:123:0.171:2	0/1:54,8:32:62:0.129:2	0/1:10,3:33:13:0.231:2	0/1:115,19:33:134:0.142:2	./.	0/1:116,15:31:131:0.115:2	0/1:108,8:33:116:0.069:2	0/1:122,5:32:127:0.039:2	0/1:106,21:33:127:0.165:2	./.	0/1:101,6:32:107:0.056:2
chr10	31134214	rs3740236	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:64,61:30:125:0.488:2	0/1:34,38:29:72:0.528:2	./.	0/1:64,62:30:126:0.492:2	./.	./.	./.	0/1:68,60:30:128:0.469:2	./.	0/1:64,62:30:126:0.492:2	./.
chr10	31138438	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:32:142:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	31138577	rs34186436	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,49:30:129:0.383:2	./.	./.
chr10	31138817	rs10160116	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:67,63:31:130:0.485:2	0/1:39,35:31:74:0.473:2	0/1:11,3:30:14:0.214:2	./.	./.	./.	./.	0/1:63,53:31:117:0.457:2	0/1:60,49:32:109:0.450:2	./.	./.
chr10	31139150	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:32:130:0.031:2	./.
chr10	31146615	rs16932010	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:14,16:32:30:0.533:2	0/1:13,9:32:22:0.409:2	./.	0/1:23,9:32:32:0.281:2	./.	./.	./.	./.	./.	0/1:0,31:32:31:1.00:2	0/1:21,23:33:44:0.523:2
chr10	31146643	rs4237394	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:21,13:34:34:0.382:2	0/1:14,15:33:29:0.517:2	0/1:7,5:34:12:0.417:2	./.	./.	./.	./.	0/1:32,11:33:44:0.256:2	0/1:22,19:34:41:0.463:2	./.	./.
chr10	31809916	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:30:85:0.047:2	./.	./.	./.
chr10	31810782	rs118020901	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,30:29:57:0.526:2	./.	./.	./.	./.	./.	./.
chr10	32120678	rs2808100	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,70:31:134:0.522:2	0/1:53,61:31:114:0.535:2	./.	./.	./.	./.	0/1:74,64:31:138:0.464:2	0/1:105,92:32:197:0.467:2
chr10	32128208	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,35:34:66:0.530:2	./.	./.
chr10	32128611	rs2808096	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,16:32:31:0.516:2	0/1:9,15:32:24:0.625:2	./.	./.	./.	./.	0/1:18,11:33:29:0.379:2	0/1:33,27:33:60:0.450:2
chr10	32141460	rs2799021	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,28:32:82:0.341:2	0/1:41,38:32:79:0.481:2	./.	./.	./.	./.	0/1:46,33:33:79:0.418:2	0/1:63,56:33:119:0.471:2
chr10	32320100	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,4:32:116:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr10	32323764	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:33:109:0.037:2	./.	./.	./.
chr10	32327779	rs45615333	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,18:34:38:0.486:2	./.	./.
chr10	32560772	rs200028097	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,10:15:109:0.092:2	./.	./.	./.	./.	0/1:68,11:16:79:0.139:2
chr10	32580205	rs72789797	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,16:29:69:0.232:2	./.	./.	./.
chr10	32635834	rs11597888	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,8:31:24:0.333:2	0/1:0,15:31:15:1.00:2	./.	./.	./.	./.
chr10	32745183	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:160,5:27:165:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr10	32745248	rs56391924	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:32:16:0.375:2	./.	./.	./.	0/1:42,66:33:108:0.611:2	./.	./.	./.	./.
chr10	32745262	rs7897978	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,47:29:82:0.573:2	./.	./.	./.	./.	0/1:40,35:29:75:0.467:2	./.	./.
chr10	32807434	rs41276068	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,25:31:59:0.424:2	./.	./.	./.	./.	0/1:27,26:32:53:0.491:2	./.	./.
chr10	32856746	rs12268559	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,5:31:6:0.833:2	./.	./.	./.	0/1:8,15:32:23:0.652:2	./.	./.	./.	./.
chr10	32974969	rs1762526	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:33:80:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,15:32:15:1.00:2	0/1:1,80:32:81:0.988:2	0/1:0,66:31:66:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,53:32:53:1.00:2	0/1:1,73:32:74:0.986:2	0/1:0,72:33:72:1.00:2	0/1:0,67:32:67:1.00:2	0/1:1,107:33:108:0.991:2
chr10	33018351	rs1414548	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,59:33:59:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,47:32:47:1.00:2
chr10	33123774	rs11009107	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:49,37:30:86:0.430:2	0/1:44,21:30:65:0.323:2	0/1:5,4:30:9:0.444:2	./.	0/1:24,22:30:46:0.478:2	0/1:57,51:30:108:0.472:2	0/1:36,33:31:69:0.478:2	0/1:42,48:30:90:0.533:2	./.	0/1:0,71:29:71:1.00:2	0/1:0,162:29:162:1.00:2
chr10	33123824	rs4448627	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:33:82:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,99:33:99:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,138:32:138:1.00:2	0/1:0,56:33:56:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,119:34:119:1.00:2	0/1:0,70:33:70:1.00:2	0/1:0,139:33:139:1.00:2
chr10	33137551	rs2504011	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:53,37:31:91:0.411:2	0/1:26,20:30:46:0.435:2	./.	./.	0/1:28,26:30:54:0.481:2	0/1:46,39:31:85:0.459:2	0/1:28,11:31:39:0.282:2	0/1:55,22:30:77:0.286:2	./.	0/1:2,64:30:66:0.970:2	0/1:0,101:30:101:1.00:2
chr10	33143396	rs1418538	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,85:33:85:1.00:2	0/1:0,63:32:63:1.00:2	0/1:1,92:32:93:0.989:2
chr10	33190567	rs2153875	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:89,67:31:156:0.429:2	0/1:55,51:32:106:0.481:2	0/1:18,14:31:32:0.438:2	0/1:67,74:30:141:0.525:2	0/1:0,116:31:116:1.00:2	0/1:1,96:31:97:0.990:2	0/1:58,61:31:119:0.513:2	0/1:71,45:30:116:0.388:2	0/1:0,131:32:131:1.00:2	0/1:1,102:31:103:0.990:2	0/1:0,169:31:169:1.00:2
chr10	33200468	rs17851763	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,10:31:14:0.714:2	./.	./.	./.	0/1:89,54:31:143:0.378:2	./.	./.	./.	./.
chr10	33209266	rs2230396	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,31:33:96:0.330:2	0/1:42,23:32:65:0.354:2	0/1:0,13:30:13:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,67:32:67:1.00:2	0/1:97,41:32:138:0.297:2	0/1:0,108:33:108:1.00:2	0/1:0,82:33:82:1.00:2	0/1:1,146:33:147:0.993:2
chr10	33211227	rs2230395	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:28,26:33:54:0.481:2	0/1:31,25:32:56:0.446:2	./.	./.	./.	./.	./.	0/1:62,73:32:135:0.541:2	./.	./.	./.
chr10	33214802	rs2298141	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,21:28:21:1.00:2	0/1:14,10:24:24:0.417:2	./.	./.	0/1:23,18:28:41:0.439:2	./.	./.
chr10	33217110	rs2230394	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:80,57:32:137:0.416:2	0/1:41,40:32:81:0.494:2	./.	./.	./.	./.	./.	0/1:73,60:31:133:0.451:2	./.	./.	./.
chr10	33469181	rs1048804	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:79,69:29:148:0.466:2	0/1:50,47:29:97:0.485:2	0/1:11,15:31:26:0.577:2	0/1:110,74:29:184:0.402:2	0/1:79,68:28:147:0.463:2	0/1:100,89:29:189:0.471:2	0/1:92,80:28:172:0.465:2	0/1:3,177:28:180:0.983:2	0/1:69,95:29:164:0.579:2	0/1:71,92:29:164:0.564:2	0/1:99,80:29:179:0.447:2
chr10	33469286	rs2229936	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,62:31:143:0.434:2	./.	./.	./.
chr10	33474644	rs61760432	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,28:32:68:0.412:2	0/1:24,20:32:44:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	33475282	rs2228638	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,67:32:122:0.549:2	0/1:56,53:31:109:0.486:2
chr10	33502240	rs2070303	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,19:31:35:0.543:2	./.	./.	./.	0/1:10,14:31:24:0.583:2	0/1:25,13:30:38:0.342:2
chr10	33502539	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,6:31:193:0.031:2	./.
chr10	33502596	rs144422380	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:33:160:0.025:2	./.	./.
chr10	33510663	rs2229935	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:30:9:0.556:2	./.	0/1:28,21:32:49:0.429:2	0/1:0,66:31:66:1.00:2	./.	./.	./.	0/1:0,49:33:49:1.00:2	0/1:0,83:33:83:1.00:2
chr10	33510768	rs2229934	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,17:30:38:0.447:2	0/1:0,48:31:48:1.00:2	./.	./.	./.	0/1:0,44:31:44:1.00:2	0/1:1,67:32:69:0.985:2
chr10	33538407	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:33:59:0.068:2	./.	./.
chr10	33552695	rs2070296	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,43:31:71:0.606:2	./.	./.	./.	./.	./.
chr10	33552696	rs7079053	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:30:62:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,63:29:63:1.00:2	0/1:0,41:29:41:1.00:2	0/1:0,70:30:70:1.00:2	0/1:0,42:30:42:1.00:2	0/1:0,44:29:44:1.00:2	0/1:0,70:30:70:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,86:29:86:1.00:2
chr10	33623251	rs3750733	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:30:4:0.750:2	./.	./.	./.	./.	./.
chr10	34408636	rs11009651	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,3:31:11:0.273:2	0/1:6,3:33:9:0.333:2	./.	0/1:4,4:25:8:0.500:2	0/1:4,4:32:8:0.500:2	./.	./.	0/1:16,6:30:22:0.273:2	./.	./.	0/1:7,4:27:11:0.364:2
chr10	34620077	rs16935326	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,40:32:90:0.444:2	./.	./.
chr10	34620220	rs3781128	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,20:33:39:0.513:2	0/1:9,10:32:19:0.526:2	./.	0/1:22,20:32:42:0.476:2	0/1:9,12:31:21:0.571:2	0/1:14,18:30:32:0.563:2	./.	0/1:19,20:31:39:0.513:2	0/1:1,36:33:37:0.973:2	0/1:0,34:32:34:1.00:2	0/1:0,44:33:44:1.00:2
chr10	34671754	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:141,4:31:145:0.028:2	./.	./.	./.	./.	./.	./.
chr10	34673109	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:31:78:0.051:2	./.	./.	./.
chr10	34688287	rs2796011	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:32:63:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,60:32:60:1.00:2
chr10	34739254	rs137940178	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,24:33:66:0.364:2	./.	./.
chr10	35302705	rs12830	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:31:13:0.462:2	0/1:5,5:32:10:0.500:2	./.	./.	./.	0/1:2,7:31:9:0.778:2	0/1:6,5:31:11:0.455:2	0/1:0,5:30:5:1.00:2	0/1:12,9:33:21:0.429:2	0/1:4,7:32:11:0.636:2	./.
chr10	35305251	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:32:131:0.031:2	./.	./.	./.	./.
chr10	35321414	rs16935840	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,5:31:18:0.278:2	0/1:16,14:30:30:0.467:2	0/1:17,8:31:25:0.320:2	0/1:25,19:32:44:0.432:2	./.	./.	./.
chr10	35338699	rs7900480	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:32,24:33:56:0.429:2	0/1:12,8:33:20:0.400:2	./.	./.	0/1:29,19:33:48:0.396:2	0/1:28,27:32:55:0.491:2	0/1:31,25:33:56:0.446:2	0/1:0,57:32:57:1.00:2	0/1:31,21:34:52:0.404:2	0/1:35,9:33:44:0.205:2	./.
chr10	35360236	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:133,4:31:137:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr10	35360237	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:132,4:32:136:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr10	35426755	rs17499247	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:42,48:32:90:0.533:2	0/1:29,19:33:48:0.396:2	0/1:6,5:32:11:0.455:2	./.	0/1:28,35:32:63:0.556:2	0/1:59,47:32:106:0.443:2	0/1:19,18:32:39:0.486:2	0/1:0,96:32:96:1.00:2	0/1:59,50:33:109:0.459:2	0/1:40,34:32:74:0.459:2	./.
chr10	35437334	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.	./.	./.
chr10	35437380	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:33:132:0.030:2	./.	./.
chr10	35484099	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,4:31:115:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr10	35772402	rs3802509	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,150:33:150:1.00:2	0/1:3,118:32:121:0.975:2	0/1:25,11:32:36:0.306:2	./.	0/1:75,49:32:124:0.395:2	0/1:91,76:32:167:0.455:2	./.	0/1:0,150:33:150:1.00:2	0/1:85,84:34:169:0.497:2	0/1:0,158:33:158:1.00:2	0/1:74,77:33:151:0.510:2
chr10	35896957	rs595652	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:32:9:0.667:2	./.	./.	./.	./.	./.	./.	0/1:17,14:32:31:0.452:2	./.
chr10	35897017	rs145646764	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,18:31:44:0.409:2	./.
chr10	35897487	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,15:25:35:0.429:2
chr10	35928303	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,6:31:11:0.600:2	./.	./.	./.	./.	./.
chr10	36811969	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:162,5:33:167:0.030:2	0/1:107,4:32:111:0.036:2	./.	0/1:142,4:33:146:0.027:2	./.	./.	./.	./.
chr10	36812050	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,5:28:146:0.034:2	./.	./.	./.
chr10	36812317	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:32:198:0.025:2	0/1:194,4:33:198:0.020:2
chr10	36812362	rs2503084	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,149:32:175:0.851:2	0/1:26,148:32:174:0.851:2	./.	0/1:100,98:32:198:0.495:2	0/1:116,78:32:194:0.402:2	0/1:125,67:31:192:0.349:2	0/1:119,63:32:182:0.346:2	0/1:119,79:31:198:0.399:2	0/1:119,69:33:188:0.367:2	0/1:103,96:32:199:0.482:2	0/1:102,90:32:192:0.469:2
chr10	36812385	.	T	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:177,18:28:195:0.092:2	0/1:175,18:27:193:0.093:2	0/1:43,9:28:52:0.173:2	./.	0/1:173,21:28:194:0.108:2	0/1:171,18:28:189:0.095:2	0/1:179,21:28:200:0.105:2	0/1:174,22:27:196:0.112:2	0/1:177,22:30:199:0.111:2	./.	./.
chr10	36812857	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:154,5:31:159:0.031:2	./.	./.	./.	./.	./.	./.
chr10	36812899	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:153,4:32:158:0.025:2	./.	./.	./.	./.	./.	./.
chr10	36812923	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:32:179:0.022:2	./.	./.	./.	./.
chr10	36812934	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:32:191:0.021:2	./.	./.	./.	./.
chr10	37419218	rs61737412	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,22:32:51:0.431:2	./.	0/1:53,30:32:83:0.361:2	./.	./.
chr10	37419292	rs116939015	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	37433964	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,4:31:39:0.103:2	./.	./.	./.
chr10	37436323	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.
chr10	37438725	rs200260827	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:142,7:32:150:0.047:2	./.	./.	./.	./.	0/1:148,4:32:152:0.026:2	./.	./.	./.	./.	./.
chr10	37441002	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:30:68:0.059:2	./.
chr10	37441023	rs370765794	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,6:30:106:0.057:2	./.	./.	./.	./.	./.
chr10	37441033	rs17590127	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:138,6:32:145:0.042:2	0/1:56,5:32:61:0.082:2	./.	./.	./.	0/1:134,4:32:138:0.029:2	0/1:117,4:33:121:0.033:2	./.
chr10	37442591	rs200154690	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,14:31:105:0.133:2	./.	./.	./.	./.	./.	./.
chr10	37447358	rs1200881	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,58:32:103:0.563:2	0/1:25,42:32:67:0.627:2	0/1:5,7:32:12:0.583:2	0/1:2,92:32:94:0.979:2	0/1:21,20:32:41:0.488:2	0/1:45,38:32:83:0.458:2	./.	0/1:29,35:32:64:0.547:2	0/1:45,67:33:112:0.598:2	0/1:0,85:32:85:1.00:2	0/1:2,148:33:150:0.987:2
chr10	37447380	rs192283187	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,6:31:94:0.064:2	./.	./.	./.	./.	./.
chr10	37447445	rs16937417	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,38:33:92:0.413:2	./.	./.	./.
chr10	37447446	rs201976592	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,10:30:126:0.079:2	0/1:46,5:31:51:0.098:2	0/1:84,5:32:90:0.056:2	./.	0/1:132,5:31:137:0.036:2	./.
chr10	37447491	rs201234943	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,4:32:71:0.056:2	0/1:34,4:32:38:0.105:2	./.	./.	./.	./.	./.	./.
chr10	37451730	rs41276126	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,40:31:85:0.471:2	./.	./.	./.
chr10	37451754	rs41276128	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,41:32:61:0.672:2	./.	./.	./.
chr10	37451768	rs41276130	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,19:32:33:0.576:2	./.	0/1:33,31:32:65:0.484:2	./.	./.
chr10	37454048	rs41304589	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,59:34:123:0.480:2	0/1:35,36:33:71:0.507:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	37454067	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:173,4:33:177:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr10	37454089	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:174,4:32:178:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr10	37455581	rs372025602	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:152,5:32:157:0.032:2	./.	0/1:136,5:29:141:0.035:2	./.	./.	./.	0/1:111,7:30:118:0.059:2	0/1:108,6:30:114:0.053:2	./.	0/1:157,8:30:166:0.048:2
chr10	37455583	rs41276132	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:147,5:34:152:0.033:2	./.	0/1:134,5:32:139:0.036:2	./.	./.	./.	0/1:101,7:33:108:0.065:2	0/1:104,6:32:110:0.055:2	./.	0/1:160,8:31:168:0.048:2
chr10	37458438	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:126,18:32:144:0.125:2	./.	./.	./.	./.	./.	./.
chr10	37458629	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:30:100:0.040:2	./.	./.
chr10	37462618	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,62:29:185:0.335:2	./.	0/1:149,19:30:168:0.113:2	./.	./.
chr10	37462619	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,62:27:187:0.332:2	./.	0/1:143,19:29:162:0.117:2	./.	./.
chr10	37462680	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,9:31:124:0.073:2	./.	0/1:191,6:31:197:0.030:2	./.	./.
chr10	37462774	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,6:33:157:0.038:2	./.	./.	./.
chr10	37465130	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:31:161:0.025:2	./.	./.	./.	./.	./.
chr10	37470230	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:120,22:33:142:0.155:2	./.	./.	./.	./.	./.	./.
chr10	37474419	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,54:29:171:0.316:2	./.	0/1:145,29:30:174:0.167:2	./.	./.
chr10	37474420	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,54:27:170:0.318:2	./.	0/1:147,29:29:176:0.165:2	./.	./.
chr10	37474481	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,8:31:130:0.062:2	./.	0/1:189,10:31:199:0.050:2	./.	./.
chr10	37474575	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,16:32:127:0.126:2	./.	./.	./.
chr10	37474644	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:34:122:0.033:2	./.
chr10	37478445	rs143202734	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:32:54:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,5:32:5:1.00:2	0/1:1,54:31:55:0.982:2	0/1:0,53:32:53:1.00:2	./.	0/1:78,32:32:110:0.291:2	0/1:0,26:31:26:1.00:2	0/1:0,56:33:57:1.00:2	0/1:0,46:32:46:1.00:2	0/1:1,92:33:93:0.989:2
chr10	37478486	rs202089883	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,17:32:60:0.283:2	./.	./.	./.	./.	./.	./.
chr10	37482012	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,4:32:112:0.036:2	./.	./.	./.	./.	./.	./.	./.
chr10	37482101	rs373828396	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,4:32:33:0.121:2	./.	./.	./.
chr10	37486195	rs189399999	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,8:30:181:0.044:2	./.	./.
chr10	37486343	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:33:157:0.025:2	./.	0/1:163,11:34:175:0.063:2	./.	0/1:172,4:33:176:0.023:2	./.
chr10	37486412	rs2997347	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,8:31:118:0.068:2	./.	./.	./.
chr10	37488689	rs1209750	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:75,69:30:144:0.479:2	0/1:51,46:30:97:0.474:2	0/1:17,9:30:26:0.346:2	0/1:2,113:30:115:0.983:2	0/1:48,28:29:76:0.368:2	0/1:65,56:30:121:0.463:2	0/1:33,29:29:62:0.468:2	0/1:3,96:30:99:0.970:2	0/1:0,134:30:135:1.00:2	0/1:0,121:30:122:1.00:2	0/1:2,179:30:181:0.989:2
chr10	37490169	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:120,4:32:124:0.032:2	./.	0/1:164,12:32:177:0.068:2	0/1:94,7:32:101:0.069:2	./.	0/1:90,5:31:95:0.053:2	0/1:156,18:32:174:0.103:2	./.	0/1:170,13:33:183:0.071:2	0/1:176,7:32:183:0.038:2
chr10	37490199	.	G	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:161,11:31:172:0.064:2	0/1:96,7:31:103:0.068:2	./.	0/1:91,5:28:96:0.052:2	0/1:166,14:31:180:0.078:2	./.	0/1:163,11:31:174:0.063:2	0/1:168,4:32:172:0.023:2
chr10	37505141	rs1200876	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,23:31:43:0.535:2	./.	0/1:43,25:31:68:0.368:2	./.	./.	./.	0/1:0,45:31:45:1.00:2	0/1:31,19:32:50:0.380:2
chr10	37505159	rs34552277	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,28:32:71:0.394:2	0/1:24,18:31:42:0.429:2	./.	0/1:33,22:32:55:0.400:2	0/1:28,18:30:46:0.391:2	./.	./.	0/1:64,26:32:90:0.289:2	0/1:60,12:32:72:0.167:2	./.	0/1:29,36:32:65:0.554:2
chr10	37505179	rs57914746	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,40:32:94:0.426:2	0/1:27,26:31:53:0.491:2	0/1:10,3:31:13:0.231:2	0/1:38,31:32:69:0.449:2	0/1:35,23:30:58:0.397:2	./.	./.	0/1:72,28:32:100:0.280:2	0/1:71,18:33:89:0.202:2	./.	0/1:39,44:32:83:0.530:2
chr10	37505192	rs1200875	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,37:31:75:0.493:2	./.	0/1:55,37:31:92:0.402:2	./.	./.	0/1:75,22:32:97:0.227:2	0/1:0,79:32:79:1.00:2	0/1:51,45:32:96:0.469:2
chr10	37506782	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,6:31:82:0.073:2	./.
chr10	37506789	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,6:31:74:0.081:2	./.
chr10	37506790	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,6:32:74:0.081:2	./.
chr10	37507935	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:32:59:0.068:2	./.
chr10	37507982	rs35138017	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,36:32:72:0.500:2	./.	./.	./.	./.	./.	./.
chr10	37508450	rs1148259	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:52,40:30:92:0.435:2	0/1:20,21:30:41:0.512:2	0/1:4,4:29:8:0.500:2	./.	0/1:38,19:29:57:0.333:2	0/1:43,20:29:63:0.317:2	0/1:33,14:31:47:0.298:2	./.	./.	./.	./.
chr10	38120642	rs1208731	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,35:32:72:0.486:2	./.	./.	./.	./.	./.	0/1:0,81:31:81:1.00:2	0/1:54,47:32:101:0.465:2
chr10	38120720	rs1779132	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,19:31:75:0.253:2	./.	./.	./.	./.	./.	0/1:0,67:32:67:1.00:2	0/1:56,40:32:96:0.417:2
chr10	38120868	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:31:121:0.033:2	./.	./.	./.	./.	./.
chr10	38120945	rs1211708	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,68:30:146:0.466:2	./.	./.	./.	./.	./.	0/1:0,103:30:103:1.00:2	0/1:94,69:31:163:0.423:2
chr10	38122026	rs114578096	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,14:31:22:0.636:2	./.	./.
chr10	38241057	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,5:27:135:0.037:2	./.	./.	./.	./.
chr10	38241067	rs1208606	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,71:33:166:0.428:2	./.	./.	./.	./.	./.	0/1:3,124:33:127:0.976:2	0/1:84,67:32:151:0.444:2
chr10	38241293	rs190592805	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,24:30:62:0.387:2	./.	./.	./.	./.	./.	./.	./.
chr10	38343679	rs146079384	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,18:32:49:0.367:2	./.	./.	./.	./.	./.
chr10	38344303	rs138763916	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,6:32:142:0.042:2	./.	./.
chr10	38344676	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:30:62:0.065:2	./.	./.	./.	./.
chr10	38344700	rs2505232	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,30:32:30:1.00:2	0/1:10,7:32:17:0.412:2	0/1:2,92:33:94:0.979:2	./.	0/1:48,40:31:88:0.455:2	0/1:0,65:33:65:1.00:2	0/1:3,60:33:63:0.952:2	0/1:0,57:33:57:1.00:2	0/1:0,57:33:57:1.00:2	0/1:55,31:33:86:0.360:2
chr10	38344780	rs150886172	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,5:29:41:0.122:2	./.	./.	./.	./.
chr10	38344795	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,5:32:35:0.143:2	./.	./.	./.	./.
chr10	38344895	rs12256916	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,19:33:33:0.576:2	./.	./.
chr10	38345178	rs139631793	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,23:30:53:0.434:2	./.	./.	./.
chr10	38345455	rs12242343	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,40:33:65:0.615:2	./.	./.
chr10	38345465	rs10508862	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,13:33:38:0.342:2	./.	./.	./.	./.	./.	0/1:1,31:34:32:0.969:2	0/1:26,22:33:48:0.458:2
chr10	38406392	rs2021319	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,30:31:66:0.455:2	./.	./.
chr10	38406867	rs199784003	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,8:32:26:0.308:2
chr10	38407519	rs176889	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:30:36:1.00:2	0/1:0,26:29:26:1.00:2	0/1:2,3:28:5:0.600:2	0/1:2,43:29:45:0.956:2	./.	0/1:0,28:28:28:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,47:28:47:1.00:2	0/1:1,63:30:64:0.984:2	0/1:0,30:29:30:1.00:2	0/1:38,43:29:81:0.531:2
chr10	38672144	rs3087759	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,86:33:200:0.430:2	./.	0/1:39,154:33:193:0.798:2	0/1:132,62:33:194:0.320:2
chr10	38672172	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,17:31:198:0.086:2	./.	./.	./.	./.	./.
chr10	38680963	rs201592932	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:84,108:32:192:0.563:2	0/1:95,97:32:192:0.505:2	0/1:97,33:31:130:0.254:2	0/1:150,45:32:195:0.231:2	./.	0/1:160,40:31:200:0.200:2	0/1:149,48:33:197:0.244:2	0/1:142,55:31:197:0.279:2	0/1:144,52:33:196:0.265:2	./.	./.
chr10	38681024	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:147,48:31:195:0.246:2	0/1:128,47:31:175:0.269:2	0/1:49,23:31:72:0.319:2	0/1:139,52:32:191:0.272:2	0/1:122,53:31:175:0.303:2	0/1:135,47:31:182:0.258:2	0/1:133,52:31:185:0.281:2	0/1:137,61:32:198:0.308:2	0/1:143,47:33:190:0.247:2	0/1:141,46:32:187:0.246:2	0/1:135,46:31:181:0.254:2
chr10	42907201	rs2505860	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:73,42:33:115:0.365:2	0/1:37,24:32:62:0.393:2	./.	./.	0/1:70,46:31:116:0.397:2	0/1:72,57:31:129:0.442:2	./.	0/1:95,83:32:178:0.466:2	0/1:0,139:33:139:1.00:2	./.	./.
chr10	42907260	rs2505861	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:68,38:29:106:0.358:2	0/1:30,28:29:58:0.483:2	./.	./.	0/1:48,46:29:94:0.489:2	0/1:62,41:29:103:0.398:2	./.	0/1:81,46:29:127:0.362:2	0/1:0,114:30:114:1.00:2	./.	./.
chr10	42920832	rs2505872	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:34,18:33:52:0.346:2	0/1:18,15:32:33:0.455:2	./.	./.	0/1:27,4:33:31:0.129:2	0/1:37,22:32:59:0.373:2	./.	0/1:31,17:32:48:0.354:2	0/1:0,48:32:48:1.00:2	./.	./.
chr10	42920884	rs2489720	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,10:32:29:0.345:2	0/1:16,10:32:26:0.385:2	./.	./.	0/1:22,3:32:25:0.120:2	0/1:38,24:31:62:0.387:2	./.	0/1:26,14:32:40:0.350:2	0/1:0,38:33:38:1.00:2	./.	./.
chr10	43088127	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:33:158:0.025:2	./.
chr10	43088186	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:33:162:0.025:2	./.
chr10	43088655	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:30:84:0.048:2	./.	./.
chr10	43088670	rs140658159	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:33:87:0.046:2	./.	./.
chr10	43088760	rs138165805	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,6:32:113:0.053:2	./.	./.	./.	./.
chr10	43088774	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,6:32:108:0.056:2	./.	./.	./.	./.
chr10	43089147	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,5:26:72:0.069:2	./.	./.	./.	./.
chr10	43089156	rs7904627	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:47,58:32:105:0.552:2	0/1:31,11:32:42:0.262:2	./.	0/1:60,44:31:104:0.423:2	./.	./.	0/1:42,22:32:64:0.344:2	./.	0/1:61,46:33:107:0.430:2	./.	./.
chr10	43089965	rs210280	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:33:76:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,61:31:62:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,49:32:50:1.00:2	0/1:18,31:31:49:0.633:2	0/1:0,55:33:55:1.00:2	0/1:0,64:32:64:1.00:2	0/1:2,66:32:68:0.971:2
chr10	43090103	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:32:41:0.098:2	./.
chr10	43132398	rs61842935	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,25:30:65:0.385:2	0/1:61,53:31:114:0.465:2	./.	./.	./.	./.	./.
chr10	43232594	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,40:30:61:0.656:2	./.	./.	./.
chr10	43281089	rs7074877	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,39:29:81:0.481:2	0/1:24,29:30:53:0.547:2	./.	0/1:51,46:30:97:0.474:2	0/1:52,46:29:98:0.469:2	0/1:57,50:29:107:0.467:2	0/1:69,30:29:99:0.303:2	0/1:2,90:29:92:0.978:2	0/1:64,46:30:110:0.418:2	0/1:65,42:29:107:0.393:2	./.
chr10	43285793	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:31:126:0.032:2	./.
chr10	43287123	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:32:47:0.085:2
chr10	43287148	rs2272881	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:32:49:0.082:2
chr10	43292121	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:32:156:0.026:2	./.	./.
chr10	43292647	rs787795	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:31,26:33:57:0.456:2	0/1:16,11:33:27:0.407:2	0/1:3,3:32:6:0.500:2	./.	./.	0/1:39,21:33:60:0.350:2	./.	./.	0/1:29,15:34:44:0.341:2	./.	./.
chr10	43312807	rs11239786	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:22,14:33:36:0.389:2	0/1:8,4:33:12:0.333:2	./.	./.	./.	./.	./.	0/1:9,4:33:13:0.308:2	0/1:18,11:33:29:0.379:2	0/1:5,11:33:16:0.688:2	./.
chr10	43315765	rs2419108	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,4:30:54:0.074:2	./.	0/1:35,4:28:39:0.103:2	0/1:32,4:30:36:0.111:2	./.	./.	./.	./.
chr10	43315804	rs200151761	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,3:33:34:0.088:2	./.	./.	./.	./.	./.	./.	./.
chr10	43316002	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,4:32:37:0.108:2	./.	./.	./.	./.
chr10	43316099	rs61736599	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,105:31:194:0.541:2	0/1:77,78:30:155:0.503:2	0/1:93,98:30:191:0.513:2	0/1:109,79:30:189:0.420:2	./.	./.	./.	./.
chr10	43318659	rs200996070	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:32:164:0.024:2	./.	./.	./.	./.	./.
chr10	43595931	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:31:146:0.027:2	./.	./.	./.	./.
chr10	43595968	rs1800858	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:30:56:1.00:2	0/1:0,29:30:29:1.00:2	0/1:9,12:31:21:0.571:2	0/1:43,50:30:93:0.538:2	0/1:54,38:29:92:0.413:2	0/1:2,92:30:94:0.979:2	0/1:0,91:30:91:1.00:2	0/1:2,86:31:89:0.977:2	0/1:0,85:31:85:1.00:2	0/1:47,47:30:94:0.500:2	0/1:44,37:29:81:0.457:2
chr10	43606687	rs1800860	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:30:6:1.00:2	./.	0/1:36,22:29:58:0.379:2	0/1:0,71:29:71:1.00:2	0/1:0,67:29:67:1.00:2	0/1:41,28:28:69:0.406:2	0/1:32,24:30:56:0.429:2	0/1:0,47:29:47:1.00:2	0/1:0,42:27:42:1.00:2
chr10	43609939	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,4:31:76:0.053:2	./.	./.	./.	./.	./.	./.
chr10	43609941	rs121913312	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,24:31:42:0.571:2	0/1:15,13:31:28:0.464:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	43610119	rs1799939	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,14:31:34:0.412:2	0/1:7,10:31:17:0.588:2	./.	./.	./.	./.	./.	./.	0/1:15,16:33:31:0.516:2	./.	./.
chr10	43613843	rs1800861	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,83:30:83:1.00:2	0/1:2,56:32:58:0.966:2	0/1:0,12:30:12:1.00:2	0/1:86,78:31:165:0.476:2	0/1:111,73:31:184:0.397:2	0/1:0,130:31:130:1.00:2	0/1:1,184:31:185:0.995:2	0/1:2,180:31:182:0.989:2	0/1:1,119:32:120:0.992:2	0/1:1,96:31:97:0.990:2	0/1:0,118:31:118:1.00:2
chr10	43615633	rs1800863	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,22:31:42:0.524:2	0/1:9,10:30:19:0.526:2	./.	./.	./.	./.	./.	./.	0/1:26,26:31:52:0.500:2	./.	./.
chr10	43659396	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,4:33:133:0.030:2	./.	./.	./.	./.	./.	./.
chr10	43678796	rs2435381	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,18:31:22:0.818:2	./.	./.	0/1:82,80:30:162:0.494:2	0/1:59,60:31:119:0.504:2	./.	0/1:76,66:32:142:0.465:2	0/1:3,108:31:111:0.973:2	0/1:81,76:31:158:0.484:2
chr10	43678885	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:31:66:0.061:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	43678886	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:34:112:0.036:2	0/1:60,5:32:65:0.077:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	43678894	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:31:121:0.033:2	0/1:61,5:31:67:0.076:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	43678899	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:114,4:31:118:0.034:2	0/1:56,8:31:64:0.125:2	./.	./.	./.	./.	0/1:85,4:32:89:0.045:2	./.	./.	./.	./.
chr10	43691691	rs1254968	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,16:32:45:0.356:2	0/1:38,26:31:64:0.406:2	./.	0/1:62,3:34:65:0.046:2	./.	./.	./.	./.
chr10	43883342	rs1126487	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,23:31:54:0.426:2	0/1:23,16:31:39:0.410:2	0/1:13,6:30:19:0.316:2	0/1:44,30:30:75:0.405:2	0/1:41,47:30:88:0.534:2	0/1:56,50:30:106:0.472:2	0/1:57,41:31:98:0.418:2	0/1:47,44:31:91:0.484:2	0/1:1,68:31:69:0.986:2	./.	./.
chr10	43976983	rs12359980	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:11,22:29:33:0.667:2	0/1:10,18:30:28:0.643:2	0/1:4,4:31:8:0.500:2	./.	0/1:14,22:29:36:0.611:2	./.	./.	0/1:38,19:29:57:0.333:2	0/1:31,43:30:74:0.581:2	./.	./.
chr10	44052903	rs2230661	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,55:33:109:0.505:2	0/1:33,26:32:59:0.441:2	0/1:0,13:32:13:1.00:2	0/1:2,106:33:108:0.981:2	0/1:49,40:33:89:0.449:2	0/1:1,102:32:103:0.990:2	./.	0/1:41,57:32:98:0.582:2	./.	0/1:34,49:33:83:0.590:2	0/1:0,130:33:130:1.00:2
chr10	44053013	rs2230660	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,36:33:78:0.462:2	0/1:33,26:32:59:0.441:2	0/1:0,10:32:10:1.00:2	0/1:0,89:32:89:1.00:2	0/1:37,14:32:51:0.275:2	0/1:1,83:31:85:0.988:2	./.	0/1:52,28:32:80:0.350:2	./.	0/1:46,44:32:90:0.489:2	0/1:2,88:32:90:0.978:2
chr10	44053585	rs2999278	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,19:33:47:0.404:2	0/1:9,9:30:18:0.500:2	0/1:0,3:31:3:1.00:2	0/1:0,48:32:48:1.00:2	0/1:18,7:31:25:0.280:2	0/1:0,36:31:36:1.00:2	./.	0/1:25,22:31:47:0.468:2	./.	0/1:14,19:32:33:0.576:2	0/1:0,52:32:52:1.00:2
chr10	44111800	rs17447580	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,34:30:68:0.500:2	./.	./.	./.	./.	./.	./.
chr10	44111806	rs10899839	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,40:31:64:0.625:2	0/1:23,18:31:41:0.439:2	./.	./.	./.	0/1:43,46:31:89:0.517:2	./.	0/1:54,31:31:85:0.365:2	0/1:51,39:31:90:0.433:2	./.	./.
chr10	44112245	rs12354886	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,20:31:38:0.526:2	0/1:10,4:31:14:0.286:2	./.	./.	0/1:20,18:31:38:0.474:2	0/1:23,11:32:34:0.324:2	./.	0/1:15,14:32:29:0.483:2	0/1:37,17:31:54:0.315:2	./.	./.
chr10	44141597	rs199726414	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,60:32:96:0.625:2	./.	./.
chr10	44345134	rs78197031	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,25:31:74:0.338:2	./.	./.	./.
chr10	45430328	rs116008784	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,4:27:27:0.148:2	./.	./.	./.
chr10	45430462	rs17417442	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:33:9:0.444:2	0/1:29,24:32:53:0.453:2	0/1:24,31:32:55:0.564:2	0/1:0,49:33:49:1.00:2	0/1:23,38:32:61:0.623:2	./.	0/1:35,22:34:57:0.386:2	./.	0/1:26,19:31:45:0.422:2
chr10	45473317	rs3740094	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,14:32:20:0.700:2	./.	./.
chr10	45478092	rs870957	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,33:30:66:0.500:2	0/1:18,14:30:32:0.438:2	0/1:1,4:30:5:0.800:2	0/1:45,45:30:90:0.500:2	./.	./.	0/1:2,119:29:122:0.983:2	0/1:75,59:29:134:0.440:2	./.	0/1:44,36:29:80:0.450:2	0/1:45,36:29:81:0.444:2
chr10	45479434	rs871043	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,27:33:46:0.587:2	0/1:13,7:33:20:0.350:2	0/1:9,4:32:13:0.308:2	0/1:47,30:33:77:0.390:2	./.	./.	0/1:0,62:32:62:1.00:2	0/1:39,39:32:78:0.500:2	./.	0/1:2,36:33:38:0.947:2	0/1:36,24:32:60:0.400:2
chr10	45496120	rs12269028	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,14:31:30:0.467:2	0/1:17,10:30:27:0.370:2	0/1:0,39:32:39:1.00:2	0/1:8,13:32:21:0.619:2	0/1:14,13:31:27:0.481:2	0/1:0,40:33:40:1.00:2	0/1:7,19:32:26:0.731:2	0/1:34,25:31:59:0.424:2
chr10	45496126	rs41301609	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,7:28:24:0.292:2	./.
chr10	45496219	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,4:32:28:0.143:2	./.	./.
chr10	45499009	rs3740093	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,7:29:12:0.583:2	./.
chr10	45499122	rs146334981	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,9:29:41:0.220:2
chr10	45499272	rs3740092	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,10:29:20:0.500:2	./.
chr10	45499799	rs11471	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,8:33:26:0.308:2	0/1:10,12:32:22:0.545:2	0/1:0,33:33:33:1.00:2	0/1:16,17:32:33:0.515:2	0/1:14,16:33:30:0.533:2	0/1:0,51:33:51:1.00:2	0/1:0,24:31:24:1.00:2	0/1:33,16:33:49:0.327:2
chr10	45499974	rs11239310	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	45500221	rs11494	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,9:33:14:0.643:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	45799491	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,6:32:131:0.046:2	./.	./.	./.	./.
chr10	45869748	rs4987105	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,18:31:32:0.563:2	0/1:18,35:31:53:0.660:2	./.	./.	./.	./.	./.	./.
chr10	45924111	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,50:32:103:0.485:2
chr10	45938522	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:31:97:0.041:2	./.	./.	./.
chr10	45939617	rs2229136	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:20,6:30:26:0.231:2	0/1:10,8:28:18:0.444:2	0/1:0,3:31:3:1.00:2	./.	./.	0/1:24,16:29:40:0.400:2	./.	./.	0/1:17,4:32:21:0.190:2	./.	./.
chr10	45953767	rs7908745	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,16:31:47:0.340:2	0/1:25,19:33:44:0.432:2	0/1:0,9:32:9:1.00:2	0/1:24,28:33:52:0.538:2	0/1:22,13:32:35:0.371:2	0/1:0,37:32:37:1.00:2	0/1:2,36:33:38:0.947:2	0/1:18,26:32:44:0.591:2	0/1:1,50:34:51:0.980:2	0/1:21,17:32:39:0.447:2	0/1:29,41:33:70:0.586:2
chr10	45956828	rs3764990	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:15,26:32:41:0.634:2	0/1:8,11:31:19:0.579:2	0/1:0,3:29:3:1.00:2	./.	./.	0/1:19,24:31:43:0.558:2	./.	./.	0/1:15,16:34:31:0.516:2	./.	0/1:17,18:31:35:0.514:2
chr10	45958676	rs17157825	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:24,19:31:43:0.442:2	0/1:15,13:31:28:0.464:2	0/1:3,4:31:7:0.571:2	./.	./.	0/1:36,30:31:66:0.455:2	./.	./.	./.	./.	0/1:42,19:31:61:0.311:2
chr10	45958856	rs2291428	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:33:4:1.00:2	0/1:28,20:32:48:0.417:2	0/1:35,21:32:56:0.375:2	0/1:17,24:32:41:0.585:2	0/1:3,40:31:43:0.930:2	0/1:28,18:31:46:0.391:2	0/1:15,15:34:30:0.500:2	0/1:22,15:32:37:0.405:2	./.
chr10	45958881	rs2291429	A	G,C	.	PASS	AC=3,6;AF=0.111,0.222;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0/1:29:42:0.310:2	0/1:30:29:0.379:2	0/2:31:3:1.00:2	0/2:33:53:0.519:2	0/2:32:47:0.298:2	./.	0/2:32:36:0.944:2	0/2:33:45:0.356:2	./.	0/2:33:34:0.324:2	0/1:31:36:0.361:2
chr10	46111950	rs1060848	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,72:30:158:0.459:2	./.	./.	./.	./.	./.
chr10	46121789	rs35101253	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,42:32:80:0.525:2
chr10	46143825	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:32:132:0.030:2	./.	./.	./.	./.	./.
chr10	46143958	rs17854567	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,30:31:68:0.441:2	./.	0/1:43,30:29:73:0.411:2	0/1:16,31:30:47:0.660:2	./.	./.	0/1:36,21:30:57:0.368:2	./.
chr10	46147080	rs17768650	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,18:31:43:0.419:2	./.	./.	./.	./.	./.
chr10	46222724	rs10793625	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.
chr10	46222791	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,3:31:11:0.273:2	./.	./.	0/1:12,6:28:18:0.333:2	./.	./.	./.
chr10	46224381	rs17157971	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,59:31:124:0.476:2	./.	./.	./.	./.	./.
chr10	46224468	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:33:156:0.026:2	./.	./.	./.
chr10	46242038	rs2446526	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,78:32:189:0.413:2	./.	./.	./.	./.	./.
chr10	46242094	rs200354637	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,85:30:193:0.440:2	./.	./.	./.	./.	./.
chr10	46245556	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:33:196:0.020:2	./.	./.	./.	./.
chr10	46245557	rs190175456	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:108,78:31:186:0.419:2	0/1:106,83:30:189:0.439:2	./.	0/1:110,90:31:200:0.450:2	0/1:130,66:30:196:0.337:2	0/1:109,90:30:199:0.452:2	0/1:109,86:31:195:0.441:2	0/1:113,86:30:199:0.432:2	./.	0/1:122,78:31:200:0.390:2	./.
chr10	46246238	rs201469599	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,86:30:181:0.475:2	./.	./.
chr10	46248121	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,6:31:194:0.031:2	./.	./.	./.	./.	./.
chr10	46248641	rs199748321	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:15,6:33:21:0.286:2	0/1:11,3:33:14:0.214:2	./.	0/1:23,3:32:26:0.115:2	./.	0/1:19,3:34:22:0.136:2	./.	./.	./.	./.	./.
chr10	46248649	rs184073575	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,13:32:14:0.929:2	0/1:4,4:32:8:0.500:2	./.	0/1:3,4:33:7:0.571:2	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.
chr10	46249912	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:33:178:0.022:2	./.	./.	./.	./.
chr10	46249913	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:32:178:0.022:2	./.	./.	./.	./.
chr10	46249967	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:31:97:0.041:2	./.	./.	./.	./.
chr10	46250545	rs199533081	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,17:31:183:0.093:2	./.	./.	./.	./.	./.
chr10	46250563	rs201816041	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,9:31:168:0.054:2	./.	./.	./.	./.	./.
chr10	46254772	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:32:61:0.066:2	./.	./.	./.	./.
chr10	46254776	rs199848673	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,5:32:67:0.075:2	./.	0/1:0,3:33:3:1.00:2	./.	./.
chr10	46254783	rs186891138	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,13:34:71:0.183:2	./.	./.	./.	0/1:9,15:35:24:0.625:2	./.	0/1:157,11:34:168:0.065:2
chr10	46258869	rs201877917	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,48:32:199:0.241:2	./.	./.	./.	./.	./.
chr10	46282536	rs200104009	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,36:31:180:0.200:2	./.	./.	./.	./.	./.
chr10	46284412	rs199859824	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,43:30:79:0.544:2	0/1:42,33:30:75:0.440:2	0/1:37,34:29:71:0.479:2	0/1:45,41:31:86:0.477:2	0/1:50,48:30:98:0.490:2	./.	0/1:24,39:31:63:0.619:2	./.
chr10	46285948	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,4:31:31:0.129:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	46285954	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,49:31:180:0.272:2	./.	./.	./.	./.	./.
chr10	46287737	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,62:31:90:0.689:2	./.	./.	./.	./.	./.
chr10	46321510	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,3:29:18:0.167:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	46321527	rs200049550	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,26:32:66:0.394:2	./.	0/1:33,28:31:61:0.459:2	0/1:24,8:32:32:0.250:2	0/1:35,24:32:59:0.407:2	./.	0/1:34,30:32:64:0.469:2	./.
chr10	46321555	.	G	C,A	.	PASS	AC=3,1;AF=0.250,0.083;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant10	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	0/1:34:14:0.429:2	./.	./.	./.	./.	./.	./.	0/2:29:41:0.200:2	0/1:33:29:0.138:2	./.	0/1:30:15:0.200:2
chr10	46321582	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,3:32:23:0.130:2	./.	./.	./.	./.	./.	./.	./.
chr10	46321738	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,7:32:32:0.219:2	./.	./.	./.	./.	./.
chr10	46321880	rs201179318	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,25:30:122:0.205:2	./.	./.	0/1:67,21:30:88:0.239:2	0/1:116,21:31:137:0.153:2	./.	0/1:93,18:31:111:0.162:2	./.
chr10	46321904	rs202104169	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,9:27:80:0.113:2	0/1:45,4:29:49:0.082:2	0/1:7,4:29:11:0.364:2	0/1:105,63:29:168:0.375:2	0/1:88,31:27:119:0.261:2	0/1:112,13:30:125:0.104:2	0/1:78,30:29:108:0.278:2	0/1:132,50:29:182:0.275:2	0/1:110,26:29:136:0.191:2	0/1:83,46:29:129:0.357:2	0/1:114,45:29:159:0.283:2
chr10	46321905	rs200463969	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,23:31:126:0.183:2	./.	./.	./.	./.	./.
chr10	46322037	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,5:26:6:0.833:2	0/1:0,4:28:4:1.00:2	./.	0/1:80,7:26:87:0.080:2	./.	0/1:38,5:24:43:0.116:2	./.	./.	0/1:39,5:26:44:0.114:2	0/1:53,5:26:58:0.086:2	0/1:53,9:25:62:0.145:2
chr10	46322154	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,3:32:37:0.081:2	./.	./.	./.	./.	./.
chr10	46322245	.	G	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,8:31:34:0.235:2	0/1:40,8:30:48:0.167:2	./.	0/1:37,8:32:45:0.178:2	./.	./.	./.
chr10	46322252	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,5:28:70:0.071:2	./.	./.	./.	./.	./.	./.	./.
chr10	46322375	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:32:10:0.300:2	./.	./.	./.	./.	./.
chr10	46322491	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:43,6:30:49:0.122:2	0/1:32,4:30:36:0.111:2	./.	./.	0/1:54,6:31:60:0.100:2	0/1:28,4:30:32:0.125:2	0/1:30,5:28:35:0.143:2	0/1:53,9:27:62:0.145:2	0/1:52,7:31:59:0.119:2	./.	0/1:83,5:34:88:0.057:2
chr10	46322511	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,5:32:66:0.076:2	./.	0/1:33,5:30:38:0.132:2	./.	./.	./.	0/1:54,4:31:58:0.069:2	./.
chr10	46322549	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:52,6:30:58:0.103:2	./.	./.	0/1:45,5:32:50:0.100:2	./.	./.	./.	./.	./.	./.	0/1:41,4:31:45:0.089:2
chr10	46322589	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,3:32:39:0.077:2	./.	./.	./.
chr10	46322679	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,4:31:64:0.063:2	./.	./.	./.	./.	./.	./.
chr10	46322682	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:61,30:30:91:0.330:2	0/1:36,17:31:53:0.321:2	./.	0/1:48,17:30:65:0.262:2	0/1:43,21:31:64:0.328:2	0/1:42,18:30:60:0.300:2	0/1:40,12:29:52:0.231:2	0/1:54,14:29:68:0.206:2	0/1:53,14:31:67:0.209:2	0/1:38,21:31:59:0.356:2	0/1:66,13:29:79:0.165:2
chr10	46322687	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,7:32:74:0.095:2	./.	0/1:59,3:34:62:0.048:2	./.	./.	./.	./.	./.
chr10	46322764	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:165,6:30:171:0.035:2	0/1:68,5:31:73:0.068:2	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.
chr10	46322812	.	T	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:120,64:31:184:0.348:2	0/1:99,50:31:149:0.336:2	0/1:9,4:31:13:0.308:2	0/1:122,71:31:193:0.368:2	0/1:48,28:31:77:0.368:2	0/1:105,79:31:184:0.429:2	0/1:51,47:32:98:0.480:2	0/1:115,56:32:171:0.327:2	0/1:106,81:33:187:0.433:2	0/1:118,72:32:190:0.379:2	0/1:145,50:31:195:0.256:2
chr10	46565000	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,35:31:144:0.243:2	./.	./.	./.	./.
chr10	46565036	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:124,28:33:152:0.184:2	0/1:47,11:32:58:0.190:2	./.	./.	./.	./.	0/1:127,20:32:147:0.136:2	./.	0/1:158,27:33:185:0.146:2	./.	0/1:151,26:32:177:0.147:2
chr10	46568147	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:133,52:32:185:0.281:2	0/1:83,32:31:115:0.278:2	./.	0/1:128,67:32:195:0.344:2	0/1:122,50:32:172:0.291:2	0/1:167,19:32:186:0.102:2	0/1:130,44:32:174:0.253:2	./.	0/1:166,28:32:194:0.144:2	0/1:121,45:32:166:0.271:2	0/1:136,55:32:192:0.288:2
chr10	46568164	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:141,28:31:170:0.166:2	./.	./.	./.	./.	./.	./.
chr10	46587495	rs200270205	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:55,19:32:74:0.257:2	0/1:21,15:32:36:0.417:2	./.	./.	./.	./.	0/1:39,11:33:50:0.220:2	./.	0/1:62,12:32:74:0.162:2	./.	0/1:75,28:32:103:0.272:2
chr10	46605808	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,6:26:194:0.031:2	./.	0/1:179,9:29:188:0.048:2	./.	./.	./.
chr10	46657885	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,7:30:34:0.206:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	46657956	.	A	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:132,58:33:190:0.305:2	0/1:135,39:33:174:0.224:2	0/1:20,14:33:34:0.412:2	./.	0/1:120,45:33:165:0.273:2	0/1:121,61:33:182:0.335:2	./.	0/1:71,120:33:191:0.628:2	./.	0/1:139,54:33:193:0.280:2	./.
chr10	46663921	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,78:33:193:0.404:2
chr10	46663926	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,13:32:64:0.203:2	./.	./.	./.	./.	./.	./.	./.	0/1:115,78:33:193:0.404:2
chr10	46669246	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,42:30:170:0.247:2	0/1:62,32:31:94:0.340:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	46918609	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:164,29:31:193:0.150:2	./.	0/1:164,33:30:197:0.168:2	./.	./.	./.	./.
chr10	46923700	rs150065715	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:100,84:32:184:0.457:2	0/1:108,58:32:166:0.349:2	0/1:31,15:31:46:0.326:2	0/1:161,33:30:194:0.170:2	0/1:151,41:31:192:0.214:2	0/1:102,86:31:188:0.457:2	0/1:162,36:30:198:0.182:2	0/1:107,81:31:188:0.431:2	0/1:116,76:32:192:0.396:2	0/1:167,32:32:199:0.161:2	0/1:114,75:32:189:0.397:2
chr10	46923803	rs200588185	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,37:31:103:0.363:2	0/1:41,23:32:64:0.359:2	0/1:9,3:32:12:0.250:2	0/1:82,14:31:96:0.146:2	./.	0/1:86,20:31:106:0.189:2	0/1:70,15:31:85:0.176:2	./.	0/1:81,51:33:132:0.386:2	./.	0/1:77,25:32:102:0.245:2
chr10	46927827	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:30:114:0.035:2	./.	./.	./.	./.
chr10	46927902	.	A	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:168,31:29:199:0.156:2	0/1:104,26:28:131:0.200:2	./.	0/1:160,39:28:199:0.196:2	0/1:140,13:28:153:0.085:2	0/1:183,12:28:195:0.062:2	0/1:172,26:29:199:0.131:2	0/1:174,25:28:199:0.126:2	0/1:185,13:28:198:0.066:2	0/1:132,33:29:165:0.200:2	0/1:176,22:26:198:0.111:2
chr10	46934819	rs112896108	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,4:31:99:0.040:2	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.
chr10	46934832	rs3120373	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,14:32:14:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,52:33:52:1.00:2	./.	0/1:0,75:32:75:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,55:33:55:1.00:2	0/1:0,93:33:93:1.00:2	./.	0/1:0,37:33:38:1.00:2
chr10	46934866	.	C	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	0/1:0,3:33:3:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,5:34:5:1.00:2	./.	0/1:0,7:33:7:1.00:2
chr10	46934889	rs112581523	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	0/1:0,4:31:4:1.00:2
chr10	46963951	rs55945664	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,4:31:23:0.174:2	./.	0/1:154,42:31:196:0.214:2	0/1:150,45:31:195:0.231:2	./.	0/1:109,74:31:183:0.404:2	./.	0/1:122,24:31:146:0.164:2	./.
chr10	46965018	rs3127785	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,43:29:53:0.811:2	0/1:15,39:30:54:0.722:2	0/1:6,6:29:12:0.500:2	0/1:35,73:30:108:0.676:2	0/1:23,83:29:106:0.783:2	0/1:89,25:29:114:0.219:2	0/1:35,93:29:128:0.727:2	0/1:102,41:29:143:0.287:2	0/1:98,19:30:117:0.162:2	0/1:21,68:30:89:0.764:2	0/1:42,30:30:72:0.417:2
chr10	46965727	rs1889849	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,29:32:38:0.763:2	0/1:7,19:32:26:0.731:2	0/1:4,3:32:7:0.429:2	0/1:23,30:32:53:0.566:2	0/1:19,52:31:71:0.732:2	0/1:32,36:31:68:0.529:2	0/1:33,67:32:100:0.670:2	0/1:45,33:33:78:0.423:2	0/1:34,28:32:62:0.452:2	0/1:10,34:33:44:0.773:2	0/1:38,25:33:63:0.397:2
chr10	46967672	rs2152530	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,96:32:145:0.662:2	0/1:23,59:32:82:0.720:2	0/1:6,20:32:26:0.769:2	0/1:51,134:32:185:0.724:2	0/1:54,137:31:191:0.717:2	0/1:105,82:32:187:0.439:2	0/1:55,126:32:181:0.696:2	0/1:103,88:32:191:0.461:2	0/1:90,98:33:188:0.521:2	0/1:53,117:32:170:0.688:2	0/1:119,69:32:188:0.367:2
chr10	46968665	rs200814731	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,9:32:45:0.200:2	./.	0/1:33,15:32:48:0.313:2	./.	./.	./.	./.
chr10	46969312	rs55894256	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,18:29:77:0.234:2	0/1:51,9:30:60:0.150:2	./.	./.	./.	./.	./.
chr10	46998894	rs3127817	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,28:27:42:0.718:2	0/1:12,24:30:36:0.667:2	0/1:5,4:31:9:0.444:2	0/1:22,42:29:64:0.656:2	0/1:14,26:28:40:0.650:2	0/1:32,22:25:54:0.407:2	0/1:18,22:25:40:0.550:2	0/1:20,52:27:72:0.722:2	0/1:23,14:27:37:0.378:2	0/1:11,27:28:39:0.711:2	0/1:11,18:22:31:0.621:2
chr10	46998995	rs4926045	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:12,4:31:16:0.250:2	./.	./.	0/1:15,7:33:22:0.318:2	./.	0/1:5,5:31:10:0.500:2	0/1:7,5:31:12:0.417:2	0/1:14,12:32:26:0.462:2	0/1:10,4:31:14:0.286:2	0/1:13,4:33:17:0.235:2	0/1:6,3:33:9:0.333:2
chr10	46998999	rs3127818	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,11:31:16:0.688:2	0/1:2,7:30:9:0.778:2	./.	0/1:7,15:32:22:0.682:2	0/1:2,9:31:11:0.818:2	0/1:5,5:32:10:0.500:2	0/1:7,5:30:12:0.417:2	0/1:13,14:31:27:0.519:2	0/1:4,10:33:14:0.714:2	0/1:3,14:31:17:0.824:2	0/1:4,5:31:9:0.556:2
chr10	46999019	rs3127819	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,16:31:22:0.727:2	0/1:1,7:32:8:0.875:2	0/1:0,2:32:2:1.00:2	0/1:7,16:31:23:0.696:2	0/1:2,10:33:12:0.833:2	0/1:10,3:33:13:0.231:2	0/1:7,7:31:14:0.500:2	0/1:14,17:32:31:0.548:2	0/1:7,11:33:18:0.611:2	0/1:4,13:32:17:0.765:2	0/1:6,5:31:11:0.455:2
chr10	46999030	rs4925989	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:18,7:32:25:0.280:2	./.	./.	0/1:20,8:32:28:0.286:2	./.	0/1:2,11:30:13:0.846:2	0/1:12,5:30:17:0.294:2	0/1:16,11:32:27:0.407:2	0/1:10,8:30:18:0.444:2	0/1:12,3:32:15:0.200:2	0/1:3,6:32:9:0.667:2
chr10	46999096	rs202094243	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,4:30:29:0.138:2	./.	./.	./.	./.	./.	0/1:21,7:30:28:0.250:2	./.
chr10	46999151	rs3127820	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,9:33:12:0.750:2	0/1:4,5:28:9:0.556:2	./.	0/1:6,15:32:21:0.714:2	0/1:10,4:33:14:0.286:2	0/1:9,12:29:21:0.571:2	0/1:6,4:27:10:0.400:2	0/1:9,9:30:18:0.500:2	0/1:7,8:32:15:0.533:2	0/1:7,12:30:19:0.632:2	0/1:3,7:32:10:0.700:2
chr10	46999178	rs7090312	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,3:32:12:0.250:2	./.	0/1:1,7:32:8:0.875:2	0/1:16,3:33:19:0.158:2	0/1:12,7:31:19:0.368:2	0/1:9,12:32:21:0.571:2	0/1:9,3:33:12:0.250:2	0/1:8,6:32:14:0.429:2	0/1:6,4:32:10:0.400:2	0/1:14,5:33:19:0.263:2	0/1:3,3:32:6:0.500:2
chr10	46999189	rs3127678	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,9:28:12:0.750:2	0/1:1,7:27:8:0.875:2	./.	0/1:5,11:26:16:0.688:2	0/1:12,7:28:19:0.368:2	./.	0/1:5,4:26:9:0.444:2	./.	0/1:6,4:20:11:0.400:2	0/1:3,12:24:15:0.800:2	./.
chr10	46999190	rs3127679	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,13:29:13:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,5:28:5:1.00:2	0/1:0,15:28:15:1.00:2	0/1:6,14:29:20:0.700:2	0/1:0,16:28:16:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,14:26:14:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,9:29:9:1.00:2
chr10	46999198	rs3127680	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,15:30:18:0.833:2	0/1:2,6:31:8:0.750:2	./.	0/1:4,10:26:14:0.714:2	0/1:14,9:30:23:0.391:2	0/1:13,9:31:22:0.409:2	0/1:6,5:30:11:0.455:2	0/1:13,5:29:18:0.278:2	0/1:10,7:28:17:0.412:2	0/1:3,16:30:19:0.842:2	./.
chr10	46999465	rs3127682	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,18:29:24:0.750:2	0/1:2,10:27:12:0.833:2	./.	0/1:8,18:29:26:0.692:2	0/1:22,18:27:40:0.450:2	0/1:5,7:29:12:0.583:2	0/1:11,16:29:27:0.593:2	0/1:15,14:28:29:0.483:2	0/1:23,13:30:36:0.361:2	0/1:6,12:29:18:0.667:2	./.
chr10	46999484	rs11204658	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,5:30:26:0.192:2	./.	./.	0/1:24,10:30:34:0.294:2	0/1:32,7:28:39:0.179:2	0/1:8,8:32:16:0.500:2	0/1:23,10:31:33:0.303:2	0/1:20,15:32:35:0.429:2	0/1:10,24:32:34:0.706:2	0/1:13,5:31:18:0.278:2	0/1:5,13:30:18:0.722:2
chr10	46999577	rs11204659	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,8:30:38:0.211:2	0/1:22,10:30:32:0.313:2	./.	0/1:63,17:31:80:0.213:2	0/1:62,10:30:72:0.139:2	0/1:20,18:30:38:0.474:2	0/1:47,17:30:64:0.266:2	0/1:33,37:30:70:0.529:2	0/1:20,14:31:34:0.412:2	0/1:32,12:31:44:0.273:2	0/1:14,20:31:34:0.588:2
chr10	46999596	rs7895979	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,10:31:45:0.222:2	0/1:29,11:32:41:0.275:2	./.	0/1:83,21:31:104:0.202:2	0/1:91,14:29:105:0.133:2	0/1:32,24:30:56:0.429:2	0/1:69,18:31:87:0.207:2	0/1:53,46:31:99:0.465:2	0/1:29,20:32:49:0.408:2	0/1:44,10:31:55:0.185:2	0/1:23,22:30:45:0.489:2
chr10	46999601	rs9422022	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,12:30:45:0.267:2	./.	./.	0/1:78,12:26:90:0.133:2	0/1:102,6:28:108:0.056:2	./.	./.	0/1:93,9:29:102:0.088:2	./.	0/1:40,17:30:57:0.298:2	0/1:43,5:26:48:0.104:2
chr10	46999604	rs3127683	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,33:31:45:0.733:2	0/1:2,37:32:39:0.949:2	0/1:0,4:32:4:1.00:2	0/1:12,80:32:92:0.870:2	0/1:52,57:31:110:0.523:2	0/1:3,55:31:58:0.948:2	0/1:24,56:32:80:0.700:2	0/1:9,93:31:102:0.912:2	0/1:3,44:32:47:0.936:2	0/1:17,40:30:57:0.702:2	0/1:5,42:31:47:0.894:2
chr10	46999732	rs4579877	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,25:33:94:0.266:2	0/1:31,19:32:50:0.380:2	0/1:6,7:31:13:0.538:2	0/1:100,45:33:145:0.310:2	0/1:90,33:31:123:0.268:2	0/1:54,65:31:120:0.546:2	0/1:92,55:32:147:0.374:2	0/1:65,73:32:138:0.529:2	0/1:46,51:33:97:0.526:2	0/1:93,21:33:114:0.184:2	0/1:54,57:32:111:0.514:2
chr10	46999747	rs3127821	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,61:33:85:0.718:2	0/1:19,28:33:47:0.596:2	0/1:7,6:34:13:0.462:2	0/1:42,90:31:132:0.682:2	0/1:65,42:32:107:0.393:2	0/1:65,49:32:114:0.430:2	0/1:80,39:32:119:0.328:2	0/1:67,64:32:131:0.489:2	0/1:51,45:33:96:0.469:2	0/1:20,74:32:94:0.787:2	0/1:54,45:31:99:0.455:2
chr10	46999863	rs4445576	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,10:31:48:0.208:2	0/1:33,7:32:41:0.175:2	./.	0/1:32,26:33:58:0.448:2	./.	0/1:25,16:33:41:0.390:2	./.
chr10	46999922	rs4926046	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,17:30:50:0.340:2	0/1:25,8:28:33:0.242:2	0/1:0,3:32:3:1.00:2	0/1:22,12:30:34:0.353:2	./.	0/1:27,15:30:42:0.357:2	0/1:16,6:30:22:0.273:2	./.	0/1:27,22:31:49:0.449:2	./.	0/1:8,12:30:20:0.600:2
chr10	47000004	rs3127822	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:29:61:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,94:30:94:1.00:2	0/1:0,139:31:139:1.00:2	0/1:0,126:30:126:1.00:2	0/1:0,133:30:133:1.00:2	0/1:0,129:30:129:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,79:30:79:1.00:2	0/1:0,66:30:66:1.00:2
chr10	47000071	rs4244614	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,19:32:63:0.302:2	0/1:39,17:31:56:0.304:2	0/1:11,13:32:24:0.542:2	0/1:85,24:32:109:0.220:2	0/1:129,28:32:157:0.178:2	0/1:85,71:31:156:0.455:2	0/1:88,41:31:129:0.318:2	0/1:74,84:32:158:0.532:2	0/1:62,65:33:127:0.512:2	0/1:47,18:32:65:0.277:2	0/1:29,31:33:60:0.517:2
chr10	47000079	rs3127823	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,45:30:65:0.692:2	0/1:16,39:28:55:0.709:2	0/1:13,9:29:22:0.409:2	0/1:25,81:28:106:0.764:2	0/1:87,59:28:146:0.404:2	0/1:68,75:28:143:0.524:2	0/1:66,61:29:127:0.480:2	0/1:85,69:29:155:0.448:2	0/1:71,58:30:129:0.450:2	0/1:20,40:28:61:0.667:2	0/1:32,28:28:60:0.467:2
chr10	47000097	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:31:59:0.068:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	47000146	rs3127684	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,16:31:21:0.762:2	0/1:3,17:32:20:0.850:2	./.	0/1:10,27:31:37:0.730:2	0/1:25,15:31:40:0.375:2	0/1:21,19:30:40:0.475:2	0/1:15,17:32:32:0.531:2	0/1:32,25:31:57:0.439:2	0/1:23,19:32:42:0.452:2	0/1:6,14:32:20:0.700:2	0/1:11,11:31:22:0.500:2
chr10	47000188	rs3127824	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,2:32:2:1.00:2	0/1:0,3:31:3:1.00:2	./.	0/1:0,5:31:5:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,2:31:2:1.00:2	./.	0/1:0,2:33:2:1.00:2	0/1:0,4:29:4:1.00:2	./.
chr10	47000239	rs7912299	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,2:34:4:0.500:2	0/1:0,4:33:4:1.00:2	./.	0/1:0,5:32:5:1.00:2	0/1:1,3:31:4:0.750:2	./.	./.	0/1:0,2:33:2:1.00:2	./.	0/1:2,5:33:7:0.714:2	./.
chr10	47000321	rs28689656	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:6,10:31:16:0.625:2	0/1:14,8:33:22:0.364:2	./.	0/1:10,12:32:22:0.545:2	./.	0/1:4,10:31:14:0.714:2	./.	0/1:12,9:33:21:0.429:2	0/1:7,7:34:14:0.500:2	0/1:7,11:32:18:0.611:2	0/1:15,6:27:21:0.286:2
chr10	47000366	rs28512259	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,5:33:15:0.333:2	./.	./.	0/1:13,4:33:17:0.235:2	0/1:5,18:31:23:0.783:2	0/1:11,7:32:18:0.389:2	0/1:9,9:29:18:0.500:2	./.	./.	0/1:14,6:26:20:0.300:2	./.
chr10	47000374	rs28587692	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,3:31:13:0.231:2	./.	./.	0/1:13,8:31:21:0.381:2	0/1:19,5:31:24:0.208:2	0/1:11,5:26:16:0.313:2	./.	./.	0/1:16,6:30:22:0.273:2	0/1:14,7:29:21:0.333:2	0/1:22,3:30:25:0.120:2
chr10	47000381	rs28549106	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,14:31:14:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,4:29:4:1.00:2	0/1:0,26:30:26:1.00:2	0/1:12,12:31:24:0.500:2	0/1:0,15:30:15:1.00:2	0/1:11,12:32:23:0.522:2	0/1:0,22:30:22:1.00:2	0/1:2,19:29:21:0.905:2	0/1:0,27:31:27:1.00:2	0/1:0,26:31:26:1.00:2
chr10	47000426	rs28666990	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,56:33:56:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,50:32:50:1.00:2	0/1:4,60:32:64:0.938:2	0/1:0,48:32:48:1.00:2	0/1:0,57:32:58:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,55:32:55:1.00:2
chr10	47000487	rs3127825	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,44:33:55:0.800:2	0/1:6,17:32:23:0.739:2	0/1:1,3:32:4:0.750:2	0/1:21,38:33:59:0.644:2	0/1:20,13:33:33:0.394:2	0/1:25,38:32:63:0.603:2	0/1:29,34:32:63:0.540:2	0/1:22,30:32:52:0.577:2	0/1:18,28:34:46:0.609:2	0/1:12,35:33:47:0.745:2	0/1:24,36:33:60:0.600:2
chr10	47000508	rs61840973	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,7:32:27:0.259:2	0/1:36,8:32:44:0.182:2	./.	0/1:23,18:30:41:0.439:2	./.	0/1:35,7:32:42:0.167:2	./.
chr10	47000547	rs3127685	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:7,13:32:20:0.650:2	0/1:1,3:33:4:0.750:2	0/1:0,2:33:2:1.00:2	0/1:5,9:32:14:0.643:2	0/1:5,5:32:10:0.500:2	0/1:8,6:30:14:0.429:2	0/1:9,4:32:13:0.308:2	0/1:5,10:30:15:0.667:2	0/1:8,3:33:11:0.273:2	0/1:2,10:32:12:0.833:2	0/1:9,14:32:23:0.609:2
chr10	47086915	rs59974223	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,38:31:191:0.199:2	./.	0/1:147,51:32:198:0.258:2	./.	./.	./.
chr10	47086978	rs3740294	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,36:30:198:0.182:2	./.	0/1:156,41:29:197:0.208:2	./.	./.	./.
chr10	47087078	rs2229967	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,13:31:18:0.722:2	./.	./.	0/1:107,48:32:155:0.310:2	./.	0/1:112,72:31:184:0.391:2	0/1:71,88:32:159:0.553:2	./.	./.
chr10	47087133	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:33:171:0.023:2	./.	./.	./.	./.
chr10	47087371	rs1048156	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,29:32:137:0.212:2	0/1:106,37:32:143:0.259:2	./.	0/1:81,94:32:175:0.537:2	./.	0/1:86,32:33:118:0.271:2	0/1:86,29:33:115:0.252:2
chr10	47087474	rs1129838	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,92:32:93:0.989:2	0/1:1,71:32:72:0.986:2	0/1:0,3:31:3:1.00:2	0/1:0,92:32:92:1.00:2	0/1:25,79:31:104:0.760:2	0/1:26,78:31:104:0.750:2	0/1:0,103:32:103:1.00:2	0/1:34,39:31:73:0.534:2	0/1:0,96:33:96:1.00:2	0/1:14,44:31:58:0.759:2	0/1:24,55:32:79:0.696:2
chr10	47087501	rs3824733	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:60,19:31:79:0.241:2	0/1:56,11:31:67:0.164:2	./.	0/1:46,34:31:80:0.425:2	0/1:71,19:30:90:0.211:2	0/1:63,25:31:89:0.284:2	0/1:59,28:32:87:0.322:2	./.	0/1:69,25:32:94:0.266:2	0/1:37,17:30:54:0.315:2	0/1:51,23:32:75:0.311:2
chr10	47087608	rs1936339	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:31:72:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,77:31:77:1.00:2	0/1:0,108:30:108:1.00:2	0/1:0,97:30:97:1.00:2	0/1:0,78:30:78:1.00:2	0/1:1,128:30:129:0.992:2	0/1:0,62:31:62:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,63:30:63:1.00:2
chr10	47087609	rs79871698	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,23:31:72:0.319:2	0/1:27,9:31:36:0.250:2	./.	./.	./.	./.	./.	./.	0/1:53,13:31:66:0.197:2	./.	./.
chr10	47087680	rs1048157	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,97:32:97:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,142:31:142:1.00:2	0/1:76,114:31:190:0.600:2	0/1:53,135:31:188:0.718:2	0/1:0,192:32:192:1.00:2	0/1:103,91:31:194:0.469:2	0/1:0,150:32:150:1.00:2	0/1:33,92:32:125:0.736:2	0/1:43,93:32:136:0.684:2
chr10	47087731	rs1048158	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,113:31:113:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,17:31:17:1.00:2	0/1:1,155:32:156:0.994:2	0/1:70,96:31:166:0.578:2	0/1:53,116:31:169:0.686:2	0/1:0,166:31:166:1.00:2	0/1:101,77:32:179:0.433:2	0/1:0,173:32:173:1.00:2	0/1:36,82:32:118:0.695:2	0/1:51,95:32:146:0.651:2
chr10	47087830	rs1129839	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,102:32:103:0.990:2	0/1:0,60:32:60:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,119:32:119:1.00:2	0/1:18,56:32:74:0.757:2	0/1:28,86:32:114:0.754:2	0/1:0,112:32:112:1.00:2	0/1:74,67:32:141:0.475:2	0/1:0,115:33:115:1.00:2	0/1:17,56:33:73:0.767:2	0/1:34,93:33:127:0.732:2
chr10	47158882	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	./.	./.
chr10	47158904	rs151312129	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:112,75:28:188:0.401:2	0/1:106,72:29:178:0.404:2	0/1:60,37:28:98:0.381:2	0/1:11,184:28:195:0.944:2	0/1:30,165:28:196:0.846:2	0/1:108,88:29:197:0.449:2	0/1:119,74:28:193:0.383:2	./.	0/1:115,79:29:194:0.407:2	0/1:8,184:28:192:0.958:2	0/1:25,154:29:181:0.860:2
chr10	47162137	rs199613697	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:165,30:33:195:0.154:2	0/1:164,32:33:196:0.163:2	./.	0/1:143,53:35:196:0.270:2	./.	0/1:153,44:33:197:0.223:2	./.	0/1:154,42:34:196:0.214:2	./.	./.	./.
chr10	47164956	.	C	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:138,32:32:170:0.188:2	0/1:105,14:33:119:0.118:2	0/1:58,3:34:61:0.049:2	0/1:163,21:34:184:0.114:2	0/1:189,7:31:196:0.036:2	0/1:169,12:33:181:0.066:2	./.	0/1:172,10:31:182:0.055:2	./.	0/1:181,11:29:192:0.057:2	./.
chr10	47164958	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:140,32:30:172:0.186:2	0/1:105,14:30:119:0.118:2	./.	0/1:169,21:30:190:0.111:2	0/1:192,5:32:197:0.025:2	0/1:175,12:31:187:0.064:2	./.	0/1:182,10:31:192:0.052:2	./.	0/1:180,10:30:190:0.053:2	./.
chr10	47166232	rs201596209	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:159,32:30:191:0.168:2	./.	./.	./.	./.	./.	0/1:157,28:32:187:0.151:2	0/1:161,28:29:189:0.148:2
chr10	47166293	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,16:32:79:0.203:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	47167115	rs200833954	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:85,90:30:175:0.514:2	0/1:59,97:31:156:0.622:2	./.	0/1:58,133:30:191:0.696:2	0/1:165,28:31:193:0.145:2	0/1:104,83:30:187:0.444:2	0/1:143,49:31:192:0.255:2	0/1:150,36:33:186:0.194:2	0/1:162,25:31:187:0.134:2	0/1:95,82:31:177:0.463:2	0/1:128,50:30:178:0.281:2
chr10	47168582	rs200196522	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,38:30:195:0.195:2	./.	0/1:164,32:30:196:0.163:2	./.	./.	./.
chr10	47169805	rs199537740	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	0/1:0,3:32:3:1.00:2	0/1:1,2:33:3:0.667:2	0/1:0,4:32:4:1.00:2	./.
chr10	47173867	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,52:31:192:0.271:2	./.	./.	./.	./.
chr10	47173871	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:188,8:30:196:0.041:2	./.	0/1:189,6:31:196:0.031:2	./.	./.	./.	./.	./.	0/1:188,4:32:193:0.021:2	./.
chr10	47173903	rs200576154	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:177,16:32:193:0.083:2	0/1:152,20:33:172:0.116:2	./.	0/1:177,16:32:193:0.083:2	0/1:174,21:30:195:0.108:2	0/1:186,9:31:195:0.046:2	0/1:175,23:30:198:0.116:2	./.	0/1:180,16:33:196:0.082:2	0/1:168,25:33:193:0.130:2	0/1:164,27:32:191:0.141:2
chr10	47173928	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:159,23:31:182:0.126:2	0/1:167,25:31:192:0.130:2	./.	0/1:170,22:31:192:0.115:2	0/1:179,19:28:198:0.096:2	0/1:182,10:28:192:0.052:2	0/1:152,37:31:189:0.196:2	./.	0/1:172,24:32:196:0.122:2	0/1:160,34:31:194:0.175:2	0/1:158,30:31:189:0.160:2
chr10	47181599	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,8:28:49:0.163:2	./.	./.	./.
chr10	47181664	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,62:32:174:0.356:2	./.	./.
chr10	47192981	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,10:31:81:0.123:2	./.	0/1:101,13:31:114:0.114:2	./.	./.	./.
chr10	47193065	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,38:29:188:0.202:2	./.	0/1:164,34:31:198:0.172:2	./.	./.	./.
chr10	47193382	.	A	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	0/1:0,5:33:5:1.00:2	./.	./.	./.	0/1:0,6:34:6:1.00:2	./.
chr10	47193460	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,29:32:92:0.315:2	./.	0/1:59,19:31:78:0.244:2	./.	./.	./.
chr10	47747083	rs200231986	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:158,35:33:193:0.181:2	0/1:174,13:31:187:0.070:2	./.	0/1:167,27:33:194:0.139:2	0/1:160,36:31:196:0.184:2	0/1:187,10:32:197:0.051:2	0/1:178,20:31:198:0.101:2	./.	0/1:184,12:33:196:0.061:2	0/1:180,14:32:194:0.072:2	./.
chr10	47747086	.	A	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:166,28:31:194:0.144:2	0/1:177,13:31:190:0.068:2	./.	0/1:169,26:32:195:0.133:2	0/1:163,34:30:197:0.173:2	0/1:190,8:31:198:0.040:2	0/1:180,17:31:197:0.086:2	./.	0/1:185,11:32:196:0.056:2	0/1:181,10:32:193:0.052:2	0/1:172,19:32:191:0.099:2
chr10	47747159	rs201008374	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:151,45:28:196:0.230:2	0/1:129,64:28:193:0.332:2	./.	0/1:84,107:29:191:0.560:2	0/1:146,49:28:195:0.251:2	0/1:140,53:29:193:0.275:2	0/1:132,65:28:197:0.330:2	./.	0/1:142,55:30:197:0.279:2	0/1:84,107:28:191:0.560:2	0/1:141,57:27:198:0.288:2
chr10	47752439	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,53:32:194:0.273:2	./.	0/1:146,44:32:190:0.232:2	./.	./.	./.
chr10	47753906	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:105,76:31:181:0.420:2	0/1:76,84:32:160:0.525:2	./.	0/1:56,132:30:188:0.702:2	0/1:140,38:30:178:0.213:2	0/1:95,85:29:180:0.472:2	0/1:134,39:31:174:0.225:2	0/1:149,29:31:179:0.163:2	0/1:137,41:32:178:0.230:2	0/1:85,94:31:179:0.525:2	0/1:137,38:31:175:0.217:2
chr10	47754733	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,25:32:113:0.221:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	47754794	rs200976247	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,38:30:186:0.204:2	./.	./.	./.	./.	./.	0/1:145,47:31:192:0.245:2	0/1:153,39:31:192:0.203:2
chr10	47756065	rs77623921	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,4:32:87:0.046:2	./.	./.	0/1:116,72:30:188:0.383:2	./.	./.	0/1:93,93:31:187:0.500:2	./.	./.
chr10	47756662	rs202221168	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:3,41:32:44:0.932:2	0/1:0,18:32:18:1.00:2	0/1:0,9:31:9:1.00:2	./.	0/1:4,15:32:19:0.789:2	./.	0/1:8,11:32:19:0.579:2	0/1:2,47:32:49:0.959:2	./.	./.	0/1:0,37:32:37:1.00:2
chr10	47758889	rs200846894	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:102,38:32:140:0.271:2	0/1:65,20:31:85:0.235:2	./.	0/1:119,33:31:152:0.217:2	./.	0/1:186,9:31:195:0.046:2	./.	0/1:114,38:31:153:0.250:2	./.	./.	./.
chr10	47762120	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:183,7:30:190:0.037:2	0/1:174,8:30:182:0.044:2	./.	0/1:175,19:29:194:0.098:2	./.	0/1:186,5:29:191:0.026:2	./.	./.	0/1:178,13:29:192:0.068:2	0/1:164,23:28:187:0.123:2	0/1:173,5:29:179:0.028:2
chr10	47762142	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:174,6:32:180:0.033:2	./.	./.	./.	./.	./.	./.	0/1:177,4:33:181:0.022:2	0/1:158,6:33:164:0.037:2	./.
chr10	47903154	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,15:28:176:0.085:2	./.	./.	./.	./.	./.
chr10	47903185	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,21:32:198:0.106:2	./.	./.	./.	./.	./.
chr10	47906691	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:191,5:33:196:0.026:2	0/1:190,7:30:197:0.036:2	./.	./.	0/1:189,10:29:199:0.050:2	0/1:187,9:31:196:0.046:2	0/1:190,8:32:198:0.040:2	0/1:186,12:30:198:0.061:2	./.	0/1:185,8:31:193:0.041:2	./.
chr10	47906753	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,6:29:198:0.030:2	0/1:194,5:31:199:0.025:2	./.	./.	0/1:189,6:25:195:0.031:2	./.	./.	./.
chr10	47907393	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:47,5:30:52:0.096:2	./.	0/1:66,5:30:71:0.070:2	./.	0/1:105,5:29:110:0.045:2	0/1:106,5:30:111:0.045:2	./.	./.	0/1:91,6:29:97:0.062:2	./.
chr10	47909190	rs200434804	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,35:29:41:0.854:2	0/1:2,21:31:23:0.913:2	./.	./.	./.	0/1:2,52:26:54:0.963:2	0/1:168,5:31:173:0.029:2	./.	0/1:2,39:29:41:0.951:2	0/1:0,6:31:6:1.00:2	0/1:173,7:30:182:0.039:2
chr10	47909267	rs199891675	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,3:29:25:0.120:2	0/1:7,3:33:11:0.300:2	./.	./.	./.	./.	./.	./.	0/1:9,10:32:20:0.526:2	./.	./.
chr10	47909775	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:114,19:31:133:0.143:2	0/1:71,11:31:82:0.134:2	./.	0/1:103,30:30:133:0.226:2	./.	0/1:119,24:30:143:0.168:2	./.	./.	./.	./.	./.
chr10	47909792	rs201373575	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:31:71:0.057:2	./.
chr10	47909831	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	47911538	rs201713949	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,5:31:134:0.037:2	./.	./.	./.	./.	./.
chr10	47911549	rs201672329	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,91:29:118:0.771:2	./.	./.	./.	./.	./.
chr10	47911590	rs201265056	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:36,34:31:70:0.486:2	0/1:30,32:31:62:0.516:2	./.	./.	./.	./.	0/1:63,35:32:98:0.357:2	./.	0/1:4,102:32:106:0.962:2	./.	0/1:87,44:32:131:0.336:2
chr10	47911591	rs201686643	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:37,34:31:71:0.479:2	0/1:29,32:31:62:0.525:2	./.	./.	./.	./.	0/1:65,35:33:100:0.350:2	./.	0/1:4,102:33:106:0.962:2	./.	0/1:89,43:33:132:0.326:2
chr10	47911661	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,49:32:192:0.255:2	./.	./.	./.	./.	./.
chr10	47915891	rs192916706	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:5,25:30:30:0.833:2	0/1:0,17:29:17:1.00:2	./.	0/1:0,34:29:34:1.00:2	./.	0/1:15,8:28:23:0.348:2	0/1:104,12:29:117:0.103:2	0/1:38,24:28:62:0.387:2	./.	0/1:40,11:30:51:0.216:2	0/1:155,21:30:176:0.119:2
chr10	47915898	rs183064568	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:85,28:29:113:0.248:2	0/1:8,15:31:23:0.652:2	0/1:93,42:30:135:0.311:2	./.	0/1:15,24:34:39:0.615:2	0/1:12,38:32:50:0.760:2	0/1:135,41:31:176:0.233:2
chr10	47922266	rs200758601	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,45:32:79:0.570:2	./.	./.	./.
chr10	47922316	rs370319242	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,6:33:76:0.079:2	./.	./.
chr10	47943094	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,20:29:92:0.217:2	./.	./.	./.	./.	./.
chr10	47943541	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,27:31:153:0.176:2	./.	./.	./.	./.	./.
chr10	47946953	rs200028787	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,5:31:33:0.152:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	47946959	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,20:30:177:0.114:2	./.	./.	./.	./.	./.
chr10	48003992	rs142685947	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:99,81:31:180:0.450:2	0/1:109,84:31:193:0.435:2	0/1:107,81:30:188:0.431:2	0/1:9,182:30:191:0.953:2	0/1:7,186:30:193:0.964:2	0/1:19,173:30:192:0.901:2	./.	0/1:19,174:30:193:0.902:2	0/1:119,76:31:195:0.390:2	./.	0/1:17,170:31:187:0.909:2
chr10	48007175	rs181366390	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,68:34:179:0.380:2	./.	./.
chr10	48029324	rs201370112	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:32:39:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,7:34:7:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,16:31:16:1.00:2	0/1:1,18:32:20:0.947:2	0/1:0,36:33:36:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,23:31:23:1.00:2
chr10	48235892	rs200283865	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,41:32:127:0.328:2	./.	0/1:72,36:32:108:0.333:2	./.	./.	./.
chr10	48235970	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,10:33:84:0.119:2	./.	0/1:84,4:32:88:0.045:2	./.	./.	./.	./.	./.
chr10	48235975	rs199638710	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:86,9:30:95:0.095:2	./.	0/1:11,4:28:15:0.267:2	0/1:71,6:29:77:0.078:2	0/1:47,7:29:54:0.130:2	0/1:75,7:30:82:0.085:2	0/1:54,4:30:58:0.069:2	0/1:81,7:30:88:0.080:2	0/1:51,8:31:59:0.136:2	./.	0/1:74,5:32:80:0.063:2
chr10	48235978	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,5:30:77:0.065:2	./.	./.	./.	./.	./.
chr10	48236287	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,23:30:197:0.117:2	./.	0/1:163,29:29:192:0.151:2	./.	./.	./.
chr10	48236371	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,6:31:75:0.080:2	./.	0/1:86,5:33:91:0.055:2	./.	./.	./.
chr10	48247686	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,43:33:141:0.305:2	./.	./.
chr10	48255419	.	G	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:170,24:31:194:0.124:2	0/1:158,21:32:179:0.117:2	./.	0/1:171,24:31:195:0.123:2	0/1:170,27:30:197:0.137:2	0/1:186,12:28:198:0.061:2	0/1:176,20:31:196:0.102:2	./.	0/1:188,7:32:195:0.036:2	0/1:178,18:31:196:0.092:2	0/1:168,24:32:192:0.125:2
chr10	48255444	.	T	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:174,20:33:194:0.103:2	0/1:181,14:30:195:0.072:2	./.	0/1:177,15:33:192:0.078:2	0/1:173,22:32:195:0.113:2	0/1:189,8:29:197:0.041:2	0/1:178,19:32:197:0.096:2	./.	./.	0/1:185,11:33:196:0.056:2	0/1:173,18:34:191:0.094:2
chr10	48255476	.	G	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:171,13:31:185:0.071:2	0/1:195,4:32:199:0.020:2	0/1:188,6:29:194:0.031:2	0/1:183,6:32:190:0.032:2	./.	0/1:188,9:32:197:0.046:2	0/1:186,10:29:196:0.051:2	./.
chr10	48255480	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,55:31:196:0.281:2	./.	./.	./.	./.
chr10	48260769	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,45:33:195:0.232:2	./.	0/1:148,39:32:187:0.209:2	./.	./.	./.
chr10	48262236	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:82,94:29:176:0.534:2	0/1:86,67:31:153:0.438:2	./.	0/1:43,140:31:184:0.765:2	0/1:140,36:31:176:0.205:2	0/1:91,87:29:178:0.489:2	0/1:145,35:30:180:0.194:2	0/1:131,44:31:175:0.251:2	0/1:142,41:31:183:0.224:2	0/1:96,77:31:173:0.445:2	0/1:141,40:32:181:0.221:2
chr10	48263058	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,25:32:99:0.253:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	48263119	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:150,44:30:195:0.227:2	./.	./.	./.	./.	./.	0/1:141,50:31:191:0.262:2	0/1:152,44:32:196:0.224:2
chr10	48264393	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:132,14:29:146:0.096:2	0/1:124,13:29:137:0.095:2	./.	0/1:176,9:31:185:0.049:2	./.	0/1:168,8:34:176:0.045:2	./.	./.	./.	./.	./.
chr10	48264395	.	G	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:134,14:31:148:0.095:2	0/1:119,13:33:133:0.098:2	./.	0/1:176,9:33:185:0.049:2	./.	0/1:169,8:33:177:0.045:2	./.	0/1:190,5:31:195:0.026:2	./.	./.	./.
chr10	48267214	.	C	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:151,37:33:188:0.197:2	0/1:164,30:33:194:0.155:2	./.	0/1:156,33:34:189:0.175:2	./.	0/1:138,59:33:197:0.299:2	./.	0/1:164,30:33:194:0.155:2	./.	./.	./.
chr10	48270448	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:171,10:30:181:0.055:2	0/1:173,9:30:184:0.049:2	./.	0/1:156,28:28:184:0.152:2	./.	0/1:168,11:30:179:0.061:2	0/1:178,6:30:184:0.033:2	./.	0/1:185,5:30:190:0.026:2	0/1:180,13:27:193:0.067:2	0/1:187,5:31:192:0.026:2
chr10	48270470	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:163,6:32:169:0.036:2	./.	./.	0/1:181,8:32:189:0.042:2	./.	./.	0/1:192,5:31:198:0.025:2	./.	./.	./.	./.
chr10	48370595	rs11204210	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,33:29:57:0.579:2	./.	./.	./.	0/1:29,27:31:56:0.482:2	./.	./.	./.
chr10	48372645	rs72792030	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:31:10:0.600:2	./.	./.	./.	./.	0/1:48,50:31:98:0.510:2	./.	./.	./.
chr10	48373123	rs35515471	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,6:30:18:0.333:2	./.	0/1:98,62:29:160:0.388:2	./.	0/1:97,74:29:171:0.433:2	0/1:68,78:29:146:0.534:2	./.	./.	./.
chr10	48373576	rs3167875	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	0/1:26,31:29:57:0.544:2	./.	0/1:33,14:29:47:0.298:2	0/1:33,29:29:62:0.468:2	./.	./.	./.
chr10	48373663	rs148792094	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:31:10:0.600:2	./.	0/1:51,54:31:105:0.514:2	./.	0/1:68,50:31:118:0.424:2	0/1:73,71:31:144:0.493:2	./.	./.	./.
chr10	48389102	rs139452142	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.
chr10	48389242	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:33:43:0.093:2	./.	./.	./.	./.
chr10	48389841	rs111245635	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,8:32:16:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	48389906	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,27:30:47:0.574:2	./.	./.	./.	./.	./.	./.	./.
chr10	48416449	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:32:127:0.031:2	./.	./.
chr10	48426591	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,4:32:40:0.100:2	./.	./.	./.	./.	./.	./.	./.
chr10	48751825	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:33:99:0.040:2	./.
chr10	48751893	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,28:30:181:0.155:2	./.	./.	./.	./.
chr10	48751929	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:101,43:32:144:0.299:2	0/1:73,12:33:85:0.141:2	./.	./.	./.	./.	0/1:146,37:32:183:0.202:2	./.	0/1:161,35:33:196:0.179:2	./.	0/1:136,50:32:186:0.269:2
chr10	48754890	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:31:136:0.029:2	./.	./.	./.	./.	./.
chr10	48755040	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:141,43:32:184:0.234:2	0/1:75,41:32:116:0.353:2	./.	0/1:150,41:32:191:0.215:2	0/1:128,50:32:178:0.281:2	0/1:169,19:31:188:0.101:2	0/1:104,56:31:160:0.350:2	./.	0/1:167,23:33:190:0.121:2	0/1:113,61:32:174:0.351:2	0/1:148,46:33:194:0.237:2
chr10	48755057	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:142,32:31:174:0.184:2	./.	./.	./.	./.	./.	./.
chr10	48774332	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:33:104:0.038:2	./.	./.
chr10	48774376	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:45,30:33:75:0.400:2	0/1:32,9:30:41:0.220:2	./.	./.	./.	./.	0/1:37,12:32:49:0.245:2	./.	0/1:45,13:33:58:0.224:2	./.	0/1:84,10:32:94:0.106:2
chr10	48792732	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,7:30:188:0.037:2	./.	0/1:177,12:29:189:0.063:2	./.	./.	./.
chr10	48844786	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,15:30:49:0.306:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	48844857	.	A	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:118,45:33:163:0.276:2	0/1:133,50:33:183:0.273:2	0/1:44,16:33:60:0.267:2	./.	0/1:139,37:33:176:0.210:2	0/1:113,60:33:173:0.347:2	./.	0/1:73,119:33:192:0.620:2	./.	0/1:121,52:33:173:0.301:2	./.
chr10	48850821	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,66:33:195:0.338:2
chr10	48850826	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,22:33:69:0.319:2	./.	./.	./.	./.	./.	./.	./.	0/1:128,69:33:197:0.350:2
chr10	48856145	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,33:29:153:0.216:2	0/1:71,14:31:85:0.165:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	49207736	.	C	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:99,26:29:125:0.208:2	./.	0/1:15,6:29:21:0.286:2	./.	./.	./.	./.	0/1:101,22:28:124:0.179:2	./.	./.	0/1:31,7:30:38:0.184:2
chr10	49207801	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,17:32:191:0.089:2	./.	./.
chr10	49313245	rs2270911	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,3:32:16:0.188:2	./.	./.	./.	./.	0/1:33,144:30:177:0.814:2	./.	0/1:106,62:31:168:0.369:2	./.	./.	./.
chr10	49319202	rs56128797	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,4:32:12:0.333:2	./.	./.	./.	./.
chr10	49365422	.	A	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:175,23:34:198:0.116:2	0/1:172,19:32:191:0.099:2	0/1:66,6:33:72:0.083:2	./.	0/1:179,18:32:197:0.091:2	0/1:179,19:32:198:0.096:2	./.	0/1:163,34:33:197:0.173:2	./.	0/1:168,26:32:194:0.134:2	./.
chr10	49371388	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,27:33:198:0.136:2
chr10	49371393	rs151138817	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,8:32:86:0.093:2	./.	./.	./.	./.	./.	./.	./.	0/1:171,27:33:198:0.136:2
chr10	49380999	rs367862519	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,64:27:74:0.877:2	0/1:3,31:26:34:0.912:2	./.	0/1:8,52:27:60:0.867:2	0/1:15,40:25:55:0.727:2	0/1:7,50:26:57:0.877:2	0/1:14,34:26:48:0.708:2	./.	0/1:186,10:28:196:0.051:2	0/1:6,48:26:54:0.889:2	0/1:5,66:25:71:0.930:2
chr10	49382926	rs144837285	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:32:23:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,41:32:41:1.00:2	0/1:1,20:31:22:0.952:2	0/1:0,27:29:27:1.00:2	0/1:6,21:32:27:0.778:2	0/1:0,26:32:26:1.00:2	0/1:188,5:34:193:0.026:2	0/1:0,28:30:30:1.00:2	0/1:1,34:32:35:0.971:2
chr10	49383976	rs200957845	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,34:27:142:0.239:2	./.	./.	./.	./.	./.	./.
chr10	49388901	rs200503523	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:80,109:32:189:0.577:2	0/1:81,109:32:190:0.574:2	./.	0/1:102,91:32:193:0.472:2	0/1:89,110:32:199:0.553:2	0/1:140,55:32:195:0.282:2	0/1:146,49:33:195:0.251:2	./.	0/1:148,43:33:191:0.225:2	0/1:79,113:32:193:0.589:2	0/1:86,103:32:189:0.545:2
chr10	49389016	rs199919944	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:59,101:32:160:0.631:2	0/1:46,108:33:154:0.701:2	./.	0/1:54,126:32:180:0.700:2	0/1:69,85:32:154:0.552:2	0/1:56,133:33:189:0.704:2	0/1:57,86:32:143:0.601:2	0/1:123,49:32:172:0.285:2	0/1:120,63:33:183:0.344:2	0/1:45,97:32:143:0.683:2	0/1:46,145:32:191:0.759:2
chr10	49420008	rs1864345	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,34:33:34:1.00:2	0/1:0,35:32:35:1.00:2	./.	0/1:0,63:32:63:1.00:2	0/1:23,38:31:61:0.623:2	0/1:36,38:31:74:0.514:2	./.	./.	0/1:24,19:33:43:0.442:2	0/1:0,43:32:43:1.00:2	0/1:36,27:34:63:0.429:2
chr10	49447720	rs55802136	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,33:33:84:0.393:2
chr10	49642974	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:32:78:0.051:2	./.
chr10	49667795	rs3853761	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:29:48:1.00:2	0/1:0,28:28:28:1.00:2	0/1:0,14:28:14:1.00:2	0/1:0,66:27:66:1.00:2	0/1:0,74:28:74:1.00:2	0/1:0,61:29:61:1.00:2	0/1:0,72:27:72:1.00:2	0/1:1,86:28:87:0.989:2	0/1:0,78:29:78:1.00:2	0/1:0,43:28:43:1.00:2	0/1:0,39:28:39:1.00:2
chr10	49687683	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,83:29:141:0.589:2	./.	./.	./.	./.	./.	./.
chr10	49687800	rs4080665	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,10:33:20:0.500:2	0/1:5,6:33:11:0.545:2	0/1:0,2:34:2:1.00:2	0/1:0,27:32:27:1.00:2	0/1:11,10:31:21:0.476:2	0/1:0,17:31:17:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,7:32:7:1.00:2
chr10	49732141	rs7089439	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.
chr10	49933974	rs7072606	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,24:32:49:0.490:2	./.	0/1:23,19:32:42:0.452:2	./.	./.
chr10	49934020	rs34731704	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,29:33:60:0.483:2	0/1:15,13:33:28:0.464:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	49944168	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,4:33:55:0.073:2	./.	./.	./.	./.	./.	./.
chr10	49984994	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:35:172:0.023:2	./.	./.	./.
chr10	49998824	rs10857644	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,70:31:141:0.496:2	./.	./.	./.
chr10	50013402	rs2170132	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,4:31:7:0.571:2	./.	./.	./.	./.	./.	0/1:8,15:32:23:0.652:2	./.	./.	0/1:6,7:33:13:0.538:2
chr10	50014139	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:33:133:0.030:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	50025396	rs7097397	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,70:32:70:1.00:2	0/1:0,29:31:29:1.00:2	./.	0/1:30,44:30:74:0.595:2	0/1:23,33:32:56:0.589:2	./.	0/1:0,41:31:41:1.00:2	./.	./.	0/1:18,14:31:32:0.438:2	0/1:0,33:31:33:1.00:2
chr10	50038800	rs3747874	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,158:33:159:0.994:2	0/1:0,94:32:94:1.00:2	./.	./.	0/1:100,79:32:179:0.441:2	./.	0/1:0,187:33:187:1.00:2	./.	0/1:191,5:34:196:0.026:2	./.	0/1:2,150:33:152:0.987:2
chr10	50040722	rs12761517	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:35,15:33:50:0.300:2	0/1:12,7:32:19:0.368:2	./.	./.	0/1:26,35:32:61:0.574:2	./.	0/1:2,74:32:76:0.974:2	./.	./.	./.	0/1:34,33:31:67:0.493:2
chr10	50083111	rs113299420	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:90,88:32:178:0.494:2	0/1:48,45:32:93:0.484:2	./.	0/1:84,102:33:186:0.548:2	./.	./.	./.	./.	./.	./.	0/1:113,84:33:197:0.426:2
chr10	50098740	rs41283285	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,46:31:125:0.368:2	./.	0/1:76,70:31:146:0.479:2	./.	./.	./.	./.
chr10	50109895	rs35423873	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:40,32:32:72:0.444:2	0/1:18,17:31:35:0.486:2	./.	./.	0/1:43,24:32:67:0.358:2	./.	0/1:0,56:32:56:1.00:2	./.	./.	./.	0/1:57,27:29:84:0.321:2
chr10	50109902	rs2663046	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:32:69:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,101:31:101:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,107:31:107:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,74:31:74:1.00:2
chr10	50121721	rs35986885	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:38,33:33:71:0.465:2	0/1:19,16:32:35:0.457:2	./.	./.	0/1:33,24:32:57:0.421:2	./.	0/1:1,55:32:56:0.982:2	./.	./.	./.	0/1:62,29:33:91:0.319:2
chr10	50121760	rs41283291	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:46,48:31:94:0.511:2	0/1:18,15:32:33:0.455:2	./.	./.	0/1:63,35:31:98:0.357:2	./.	0/1:2,78:31:80:0.975:2	./.	./.	./.	0/1:55,29:32:84:0.345:2
chr10	50121784	rs10776653	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,100:30:101:1.00:2	0/1:0,46:30:46:1.00:2	./.	0/1:1,127:32:128:0.992:2	0/1:84,65:30:149:0.436:2	./.	0/1:4,127:30:131:0.969:2	./.	./.	0/1:51,45:30:96:0.469:2	0/1:2,97:29:99:0.980:2
chr10	50121785	rs11101561	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,74:31:133:0.556:2	./.	./.	./.	./.	./.	./.	./.
chr10	50121964	rs60751127	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,59:31:131:0.450:2	./.	./.	./.	./.	./.	./.	./.
chr10	50122109	rs17772611	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:24,36:32:60:0.600:2	0/1:20,9:32:29:0.310:2	./.	./.	0/1:17,22:31:39:0.564:2	./.	0/1:0,46:31:46:1.00:2	./.	./.	./.	0/1:41,30:32:71:0.423:2
chr10	50122181	rs7094610	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,6:31:12:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:7,6:32:13:0.462:2	0/1:5,5:28:10:0.500:2
chr10	50149895	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,7:18:43:0.163:2	./.	./.	./.	./.	./.
chr10	50183042	rs61733240	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,83:30:165:0.503:2	./.	./.	./.	./.	0/1:1,110:31:111:0.991:2
chr10	50184949	rs2271565	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,83:32:85:0.988:2	0/1:0,57:31:57:1.00:2	0/1:2,14:31:16:0.875:2	./.	0/1:98,90:31:188:0.479:2	./.	0/1:92,84:32:176:0.477:2	0/1:108,86:32:194:0.443:2	0/1:81,71:32:152:0.467:2	./.	./.
chr10	50186415	rs2292584	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,29:32:29:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,6:32:6:1.00:2	./.	0/1:19,12:33:31:0.387:2	./.	0/1:21,24:33:45:0.533:2	0/1:29,26:32:55:0.473:2	0/1:38,27:31:65:0.415:2	./.	./.
chr10	50227785	rs1913525	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:33:37:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,46:34:46:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,32:32:32:1.00:2
chr10	50315779	rs201953245	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,32:31:61:0.525:2	./.	./.	./.	./.	./.	0/1:23,12:33:35:0.343:2	./.
chr10	50315893	rs13088	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:26,35:33:61:0.574:2	0/1:12,17:32:29:0.586:2	0/1:1,10:32:11:0.909:2	./.	0/1:30,30:32:60:0.500:2	0/1:35,40:33:75:0.533:2	0/1:38,31:32:69:0.449:2	0/1:1,60:33:61:0.984:2	./.	0/1:27,23:32:50:0.460:2	0/1:23,30:32:53:0.566:2
chr10	50339754	rs73302786	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,67:30:149:0.450:2	0/1:60,86:31:146:0.589:2	0/1:88,61:31:149:0.409:2	./.	./.	./.	0/1:63,45:31:108:0.417:2
chr10	50339925	rs12765281	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:9,11:31:20:0.550:2	0/1:6,6:30:12:0.500:2	0/1:0,7:31:7:1.00:2	./.	0/1:9,9:30:18:0.500:2	0/1:7,6:30:13:0.462:2	0/1:5,4:32:9:0.444:2	0/1:1,5:30:6:0.833:2	./.	./.	./.
chr10	50339962	rs75297145	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,14:31:24:0.583:2	0/1:9,5:31:14:0.357:2	0/1:7,9:32:16:0.563:2	./.	./.	./.	0/1:8,8:33:16:0.500:2
chr10	50340190	rs41280539	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,21:31:55:0.382:2
chr10	50340304	rs17773851	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:17,16:32:33:0.485:2	0/1:12,11:31:23:0.478:2	0/1:0,8:33:8:1.00:2	./.	0/1:49,34:31:83:0.410:2	0/1:34,21:30:55:0.382:2	0/1:31,40:31:71:0.563:2	0/1:0,81:31:81:1.00:2	./.	./.	./.
chr10	50341954	rs34110351	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:49,53:32:102:0.520:2	0/1:41,37:32:78:0.474:2	0/1:0,14:32:15:1.00:2	./.	0/1:96,72:32:168:0.429:2	0/1:96,64:32:160:0.400:2	0/1:94,72:32:166:0.434:2	0/1:1,156:32:157:0.994:2	./.	./.	./.
chr10	50363935	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:31:55:0.073:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	50369666	rs112677967	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,44:32:91:0.484:2	./.	./.
chr10	50374930	rs45563932	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,10:30:26:0.385:2	0/1:12,13:30:25:0.520:2	./.	./.	0/1:26,35:30:61:0.574:2	0/1:20,18:31:38:0.474:2	0/1:39,15:29:54:0.278:2	0/1:1,69:30:71:0.986:2	./.	./.	./.
chr10	50376004	rs61748312	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,23:34:35:0.657:2	./.
chr10	50396388	rs17009534	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,88:31:187:0.476:2
chr10	50530724	rs151171891	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,72:32:153:0.471:2	./.	./.	./.
chr10	50531214	rs4838383	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,30:34:65:0.462:2	0/1:36,23:31:59:0.390:2	./.
chr10	50531227	rs200497882	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,26:32:66:0.394:2	./.	./.	./.
chr10	50531549	rs56206226	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,16:31:32:0.500:2	0/1:6,8:29:14:0.571:2	./.	./.	./.	./.	./.	./.	0/1:32,22:32:54:0.407:2	0/1:22,22:31:44:0.500:2	0/1:15,13:32:28:0.464:2
chr10	50531604	rs7093235	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,18:29:18:1.00:2	0/1:0,11:27:11:1.00:2	./.	0/1:0,34:29:35:1.00:2	0/1:0,32:28:32:1.00:2	0/1:0,21:28:21:1.00:2	0/1:0,26:29:26:1.00:2	0/1:0,20:28:20:1.00:2	0/1:0,32:29:32:1.00:2	0/1:0,22:28:22:1.00:2	0/1:0,26:28:26:1.00:2
chr10	50531606	rs55780106	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,8:31:20:0.400:2	0/1:6,6:31:12:0.500:2	./.	./.	./.	./.	./.	./.	0/1:19,12:32:32:0.387:2	0/1:9,13:30:22:0.591:2	0/1:16,12:31:28:0.429:2
chr10	50531931	rs75053680	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:30:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	50531972	rs45554335	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,31:31:50:0.620:2	0/1:14,13:32:27:0.481:2	./.	./.	./.	./.	./.	./.	0/1:14,23:33:37:0.622:2	0/1:13,18:33:31:0.581:2	0/1:17,20:31:37:0.541:2
chr10	50532588	rs10857469	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,11:32:26:0.423:2	./.	./.	./.	./.	./.	./.
chr10	50532683	rs7921186	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:32:60:1.00:2	0/1:0,43:33:43:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,28:32:28:1.00:2	0/1:1,39:33:40:0.975:2	0/1:0,34:32:34:1.00:2	0/1:0,47:33:47:1.00:2
chr10	50532812	rs11101093	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,66:31:161:0.410:2	./.	./.	./.	./.	./.	./.
chr10	50533237	rs12217617	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,21:30:39:0.538:2	0/1:17,10:30:27:0.370:2	./.	./.	./.	./.	./.	./.	0/1:18,26:32:44:0.591:2	0/1:8,10:31:18:0.556:2	0/1:22,17:30:39:0.436:2
chr10	50533302	rs115708984	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,4:32:75:0.053:2	./.	./.	./.	./.	./.	./.	./.
chr10	50533463	rs10857470	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,20:29:48:0.417:2	./.	./.	./.	./.	./.	./.
chr10	50533617	rs2377940	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:27:50:1.00:2	0/1:0,28:28:28:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,82:28:82:1.00:2	0/1:0,72:27:72:1.00:2	0/1:0,72:28:72:1.00:2	0/1:0,102:28:102:1.00:2	0/1:1,109:28:110:0.991:2	0/1:47,40:29:87:0.460:2	0/1:48,34:28:82:0.415:2	0/1:0,70:27:70:1.00:2
chr10	50533776	rs10857471	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,3:30:11:0.273:2	0/1:5,3:31:8:0.375:2	./.	0/1:7,12:28:19:0.632:2	0/1:2,4:30:6:0.667:2	0/1:5,7:28:12:0.583:2	0/1:6,3:29:9:0.333:2	0/1:0,9:28:9:1.00:2	./.	0/1:10,8:27:18:0.444:2	./.
chr10	50533841	rs11101094	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,7:26:19:0.368:2	./.	./.	./.	./.	./.	./.
chr10	50534151	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:33:29:0.138:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	50534350	rs11101095	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,6:30:8:0.750:2	./.	./.	./.	./.	./.	./.
chr10	50534395	rs41301109	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,5:33:9:0.556:2	0/1:1,6:31:7:0.857:2	./.
chr10	50534599	rs10857472	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,4:33:14:0.286:2	0/1:0,3:32:3:1.00:2	0/1:1,2:33:3:0.667:2	0/1:6,3:31:9:0.333:2	0/1:5,7:32:12:0.583:2	0/1:5,11:31:16:0.688:2	0/1:1,7:31:8:0.875:2	0/1:1,5:32:6:0.833:2	0/1:3,6:33:9:0.667:2	0/1:6,4:33:10:0.400:2	./.
chr10	50534862	rs12411843	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:10,13:29:23:0.565:2	0/1:5,14:28:19:0.737:2	./.	0/1:16,19:27:35:0.543:2	./.	0/1:10,13:26:23:0.565:2	./.	./.	0/1:20,17:27:37:0.459:2	0/1:6,21:28:27:0.778:2	0/1:0,26:28:26:1.00:2
chr10	50535186	rs71500272	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:28,25:30:53:0.472:2	0/1:17,13:30:30:0.433:2	./.	0/1:38,18:30:56:0.321:2	./.	0/1:19,41:30:60:0.683:2	./.	./.	./.	./.	0/1:0,53:30:53:1.00:2
chr10	50666950	rs201813523	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,18:30:52:0.346:2	./.	./.	./.	./.	./.
chr10	50667105	rs2228529	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:38,39:30:77:0.506:2	0/1:13,17:28:30:0.567:2	./.	./.	./.	./.	./.	0/1:56,43:29:99:0.434:2	./.	./.	./.
chr10	50678317	rs4253211	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,22:32:43:0.512:2	./.	./.	./.	./.	./.	./.	0/1:111,58:33:169:0.343:2	./.
chr10	50678369	rs2228527	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:95,96:29:191:0.503:2	0/1:79,85:29:164:0.518:2	./.	./.	./.	./.	./.	0/1:122,76:29:198:0.384:2	./.	./.	./.
chr10	50678717	rs2228526	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:35,52:31:87:0.598:2	0/1:32,23:29:55:0.418:2	./.	./.	./.	./.	./.	0/1:69,35:29:104:0.337:2	./.	./.	./.
chr10	50681033	rs2229760	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,41:31:87:0.471:2	0/1:27,27:31:54:0.500:2	./.	0/1:1,130:31:131:0.992:2	0/1:72,56:31:128:0.438:2	0/1:1,112:31:113:0.991:2	0/1:92,89:31:181:0.492:2	./.	0/1:61,62:32:123:0.504:2	0/1:45,43:31:88:0.489:2	0/1:0,116:31:116:1.00:2
chr10	50681566	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:33:192:0.021:2	./.	./.
chr10	50723684	rs4253073	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:31:67:1.00:2	0/1:0,36:32:36:1.00:2	0/1:6,3:32:9:0.333:2	0/1:0,71:31:71:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,37:32:37:1.00:2	0/1:22,25:31:47:0.532:2	0/1:0,63:32:63:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,77:31:77:1.00:2
chr10	50724016	rs4253072	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,99:32:99:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,114:31:114:1.00:2	0/1:0,101:31:101:1.00:2	0/1:0,113:30:113:1.00:2	0/1:0,111:31:111:1.00:2	0/1:0,109:32:109:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,115:32:115:1.00:2
chr10	50724716	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,39:34:107:0.364:2	./.	./.
chr10	50732139	rs4253047	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,25:30:57:0.439:2	./.	./.	./.	./.	./.	./.	./.
chr10	50732280	rs2228528	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:26:8:0.625:2	./.	./.	./.	./.	./.	./.	0/1:17,33:31:50:0.660:2	./.
chr10	50740876	rs2228524	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,64:32:64:1.00:2	0/1:0,40:32:40:1.00:2	./.	0/1:0,86:32:86:1.00:2	0/1:0,94:31:94:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,66:32:66:1.00:2	0/1:53,47:32:100:0.470:2	0/1:1,87:33:88:0.989:2	0/1:24,25:32:49:0.510:2	0/1:0,66:31:66:1.00:2
chr10	50820345	rs8187730	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,14:30:14:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,38:30:39:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,24:29:24:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,19:30:19:1.00:2
chr10	50820424	rs2269338	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,49:30:51:0.961:2	./.	./.	0/1:11,19:29:30:0.633:2	./.	0/1:23,16:31:39:0.410:2	0/1:21,17:31:38:0.447:2	0/1:18,12:30:30:0.400:2
chr10	50824106	rs41306415	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,65:32:147:0.442:2	./.	./.	./.	./.	./.	./.
chr10	50824117	rs1880676	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,124:31:124:1.00:2	0/1:98,75:32:173:0.434:2	0/1:99,91:31:190:0.479:2	0/1:81,87:32:168:0.518:2	0/1:63,47:31:110:0.427:2	./.
chr10	50824619	rs3810950	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,39:30:39:1.00:2	0/1:27,25:32:52:0.481:2	0/1:33,32:32:65:0.492:2	0/1:24,27:33:51:0.529:2	0/1:24,14:32:38:0.368:2	./.
chr10	50833543	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:32:98:0.041:2	./.	./.	./.	./.	./.
chr10	50854637	rs8178991	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,58:32:129:0.450:2	./.	./.
chr10	50856652	rs4838544	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:32:66:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,67:30:67:1.00:2	0/1:0,91:30:91:1.00:2	0/1:0,95:30:95:1.00:2	0/1:0,101:30:101:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,88:31:88:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,64:32:64:1.00:2
chr10	50863147	rs8178992	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,31:31:49:0.633:2	0/1:10,11:31:21:0.524:2	0/1:0,13:32:13:1.00:2	0/1:0,82:32:82:1.00:2	0/1:1,88:31:89:0.989:2	0/1:0,69:31:70:1.00:2	0/1:0,124:31:125:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,87:32:87:1.00:2	0/1:2,60:31:62:0.968:2	0/1:0,52:30:52:1.00:2
chr10	50863188	rs80097077	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,58:32:127:0.457:2	./.	./.	./.
chr10	50872912	rs3793801	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,60:31:117:0.513:2	./.	./.	./.	./.	./.	./.	./.
chr10	50901938	rs1133837	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:62,58:32:120:0.483:2	0/1:49,34:32:83:0.410:2	./.	0/1:51,61:32:114:0.545:2	./.	0/1:1,147:31:148:0.993:2	0/1:9,110:32:119:0.924:2	0/1:1,153:32:154:0.994:2	0/1:92,60:33:152:0.395:2	0/1:51,70:32:121:0.579:2	0/1:75,61:32:136:0.449:2
chr10	50916484	rs1258236	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,88:33:89:0.989:2	0/1:0,50:32:50:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,118:32:118:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,127:32:127:1.00:2	0/1:0,91:33:91:1.00:2	0/1:1,89:32:90:0.989:2	0/1:74,53:32:127:0.417:2
chr10	50916542	rs4838554	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,88:32:88:1.00:2	0/1:1,65:32:66:0.985:2	./.	0/1:84,49:32:133:0.368:2	0/1:51,44:31:95:0.463:2	0/1:2,131:31:133:0.985:2	0/1:6,98:31:104:0.942:2	0/1:8,143:31:151:0.947:2	./.	0/1:56,52:31:108:0.481:2	0/1:82,63:32:145:0.434:2
chr10	50944160	rs75372646	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,32:31:59:0.542:2
chr10	50948830	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:34:195:0.021:2	./.	./.	./.	./.
chr10	50950976	rs11101224	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,47:31:93:0.505:2	./.	./.	0/1:18,42:30:60:0.700:2	./.	./.	0/1:21,20:32:41:0.488:2
chr10	50952101	rs36032010	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,37:33:86:0.430:2	./.	./.	./.	./.	0/1:54,48:33:102:0.471:2	0/1:43,53:33:96:0.552:2	./.
chr10	50953929	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:34:137:0.029:2	./.	./.
chr10	50954847	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,10:31:111:0.090:2	./.	./.
chr10	50959965	rs7090775	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,53:32:115:0.461:2
chr10	50960209	rs1258184	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:28:6:1.00:2	0/1:20,18:32:38:0.474:2	0/1:17,28:31:45:0.622:2	./.	./.	./.	0/1:0,46:32:46:1.00:2	0/1:21,22:31:43:0.512:2	./.
chr10	50960718	rs145063180	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,39:32:86:0.453:2	./.	./.	./.	./.	./.	0/1:42,26:30:68:0.382:2	./.
chr10	51093294	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,89:29:193:0.464:2	./.	./.	./.	./.	./.
chr10	51123950	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,7:32:116:0.060:2	./.	./.	./.	./.	./.
chr10	51188031	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,35:29:76:0.461:2	0/1:66,36:30:102:0.353:2	0/1:34,40:28:74:0.541:2	0/1:49,42:30:91:0.462:2	0/1:45,47:30:92:0.511:2	./.	0/1:22,29:31:51:0.569:2	./.
chr10	51189573	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,52:30:184:0.283:2	./.	./.	./.	./.	./.
chr10	51191357	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,73:32:93:0.785:2	./.	./.	./.	./.	./.
chr10	51225182	.	G	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:34,4:32:38:0.105:2	./.	./.	./.	0/1:24,3:31:27:0.111:2	0/1:25,6:31:32:0.194:2	./.	./.	./.	0/1:8,4:28:12:0.333:2	./.
chr10	51225281	rs199655682	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:11,4:33:15:0.267:2	0/1:18,5:31:23:0.217:2	./.	./.	./.	./.	0/1:4,3:31:7:0.429:2	0/1:1,2:34:3:0.667:2	./.	./.	./.
chr10	51225365	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,4:31:23:0.174:2	./.	./.	./.	./.	./.
chr10	51225388	rs200580701	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:20,17:31:37:0.459:2	0/1:16,9:31:25:0.360:2	0/1:3,3:30:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	51225507	rs77529392	C	T,A	.	PASS	AC=4,1;AF=0.267,0.067;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9	GT:BQ:DP:FA:SS	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0/1:32:160:0.519:2	./.	./.	0/1:32:197:0.457:2	0/1:32:191:0.372:2	0/2:32:198:0.020:2	0/1:32:126:0.484:2	./.
chr10	51225623	rs200187422	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,15:30:61:0.246:2	0/1:29,8:31:37:0.216:2	0/1:3,3:29:6:0.500:2	0/1:14,13:30:27:0.481:2	0/1:8,24:30:32:0.750:2	0/1:9,12:32:21:0.571:2	0/1:43,9:31:52:0.173:2	0/1:12,25:31:37:0.676:2	0/1:52,6:32:59:0.103:2	0/1:6,10:31:17:0.625:2	0/1:14,13:30:27:0.481:2
chr10	51225664	rs201637608	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,3:34:14:0.214:2
chr10	51225665	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,7:28:34:0.206:2	./.	./.	0/1:9,3:27:12:0.250:2
chr10	51225724	rs200027998	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:41,7:29:48:0.146:2	./.	./.	./.	0/1:13,3:28:16:0.188:2	./.	./.	0/1:9,4:24:13:0.308:2	./.	./.	./.
chr10	51225801	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,6:33:36:0.167:2	./.	./.	./.	./.	./.
chr10	51225872	.	G	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:30:14:0.500:2	./.	0/1:24,13:30:37:0.351:2	0/1:50,33:29:83:0.398:2	./.	0/1:74,34:29:108:0.315:2	./.	./.	./.
chr10	51225879	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,7:30:77:0.091:2	./.	./.	./.	./.	./.	./.	./.
chr10	51226118	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:59,26:30:85:0.306:2	0/1:33,12:30:45:0.267:2	./.	0/1:76,4:31:80:0.050:2	0/1:43,16:29:59:0.271:2	0/1:52,16:28:68:0.235:2	./.	0/1:73,22:29:95:0.232:2	./.	0/1:48,4:28:52:0.077:2	0/1:24,4:31:28:0.143:2
chr10	51226138	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,6:32:70:0.086:2	./.	0/1:58,4:32:62:0.065:2	0/1:37,4:29:41:0.098:2	./.	./.	./.	./.
chr10	51226176	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,7:30:54:0.130:2	./.	./.	./.	./.	0/1:42,6:32:48:0.125:2	./.	./.
chr10	51226179	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,3:33:53:0.057:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	51226216	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,3:32:42:0.071:2	0/1:55,5:33:60:0.083:2	./.	./.	./.
chr10	51226309	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,26:31:75:0.347:2	0/1:38,18:30:56:0.321:2	./.	0/1:50,33:31:83:0.398:2	0/1:49,9:31:58:0.155:2	0/1:58,14:30:72:0.194:2	0/1:55,12:31:67:0.179:2	0/1:58,17:30:75:0.227:2	0/1:45,33:32:78:0.423:2	0/1:38,19:32:57:0.333:2	0/1:57,14:30:71:0.197:2
chr10	51226314	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,5:32:73:0.068:2	0/1:67,9:33:76:0.118:2	./.	./.	0/1:62,4:29:66:0.061:2	./.
chr10	51226391	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,5:28:146:0.034:2	0/1:96,8:30:104:0.077:2	./.	0/1:184,6:27:190:0.032:2	./.	./.
chr10	51226439	rs201124655	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:127,68:32:195:0.349:2	0/1:75,44:32:119:0.370:2	0/1:17,5:32:22:0.227:2	0/1:105,86:31:191:0.450:2	0/1:44,35:31:79:0.443:2	0/1:120,79:31:199:0.397:2	0/1:55,56:31:111:0.505:2	0/1:129,47:32:176:0.267:2	0/1:108,82:32:190:0.432:2	0/1:120,69:32:189:0.365:2	0/1:144,42:32:187:0.226:2
chr10	51361729	rs202084750	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:135,5:26:140:0.036:2	./.	./.	0/1:0,3:27:3:1.00:2	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	./.	0/1:2,3:27:5:0.600:2
chr10	51361732	rs183831125	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:140,4:32:145:0.028:2	./.	./.	0/1:0,3:31:3:1.00:2	0/1:0,3:24:3:1.00:2	0/1:0,3:28:3:1.00:2	./.	./.	./.	0/1:0,4:28:4:1.00:2	0/1:0,2:33:2:1.00:2
chr10	51361785	rs200401326	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:143,27:28:170:0.159:2	0/1:149,44:30:193:0.228:2	0/1:23,6:32:29:0.207:2	0/1:111,83:30:194:0.428:2	0/1:95,34:29:129:0.264:2	0/1:137,60:30:197:0.305:2	0/1:170,23:30:194:0.119:2	0/1:137,61:30:198:0.308:2	0/1:151,33:30:184:0.179:2	0/1:112,61:30:173:0.353:2	0/1:111,81:30:192:0.422:2
chr10	51361850	rs201204635	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:108,82:30:191:0.432:2	0/1:114,75:31:189:0.397:2	0/1:56,34:30:90:0.378:2	0/1:108,84:31:194:0.438:2	0/1:129,62:30:191:0.325:2	0/1:121,73:30:194:0.376:2	0/1:141,56:30:197:0.284:2	0/1:127,71:31:198:0.359:2	0/1:110,84:31:194:0.433:2	0/1:119,74:31:193:0.383:2	0/1:114,78:31:193:0.406:2
chr10	51361901	rs199667579	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:109,87:33:196:0.444:2	0/1:119,79:33:198:0.399:2	0/1:52,36:33:88:0.409:2	0/1:111,83:32:194:0.428:2	0/1:127,72:32:199:0.362:2	0/1:105,94:32:199:0.472:2	0/1:121,76:33:197:0.386:2	0/1:118,78:33:196:0.398:2	0/1:113,83:34:196:0.423:2	0/1:105,92:33:197:0.467:2	0/1:118,76:33:194:0.392:2
chr10	51362945	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:155,35:27:190:0.184:2	0/1:153,43:27:196:0.219:2	0/1:33,6:28:39:0.154:2	0/1:75,76:28:151:0.503:2	0/1:148,47:27:195:0.241:2	0/1:135,65:27:200:0.325:2	0/1:67,68:27:135:0.504:2	0/1:143,46:28:189:0.243:2	0/1:61,82:29:144:0.573:2	0/1:77,63:28:140:0.450:2	0/1:59,55:26:115:0.482:2
chr10	51363169	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:126,63:32:189:0.333:2	0/1:121,70:32:191:0.366:2	0/1:45,30:31:75:0.400:2	0/1:109,69:32:178:0.388:2	0/1:130,58:32:188:0.309:2	0/1:107,73:32:180:0.406:2	0/1:108,80:32:188:0.426:2	0/1:109,66:32:175:0.377:2	0/1:109,70:33:179:0.391:2	0/1:113,73:32:186:0.392:2	0/1:112,64:32:176:0.364:2
chr10	51363227	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:102,53:32:155:0.342:2	0/1:110,60:32:170:0.353:2	0/1:35,16:32:51:0.314:2	0/1:101,44:32:146:0.303:2	0/1:127,49:32:176:0.278:2	0/1:92,66:32:158:0.418:2	0/1:115,51:32:166:0.307:2	0/1:113,35:33:148:0.236:2	0/1:118,35:33:153:0.229:2	0/1:101,55:32:156:0.353:2	0/1:104,51:32:155:0.329:2
chr10	51363249	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,45:31:146:0.308:2	0/1:121,59:31:180:0.328:2	0/1:37,13:32:50:0.260:2	0/1:109,44:32:153:0.288:2	0/1:118,48:32:166:0.289:2	0/1:92,64:32:156:0.410:2	0/1:117,38:31:156:0.245:2	0/1:110,38:32:149:0.257:2	0/1:116,29:32:146:0.200:2	0/1:101,40:30:141:0.284:2	0/1:110,43:31:153:0.281:2
chr10	51363294	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:98,43:33:141:0.305:2	0/1:113,58:33:171:0.339:2	0/1:29,9:33:38:0.237:2	0/1:126,37:33:163:0.227:2	0/1:120,45:32:165:0.273:2	0/1:97,67:32:164:0.409:2	0/1:127,40:33:167:0.240:2	0/1:107,52:33:159:0.327:2	0/1:116,34:33:150:0.227:2	0/1:111,44:32:155:0.284:2	0/1:115,42:33:157:0.268:2
chr10	51363304	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:106,41:31:147:0.279:2	0/1:126,56:32:182:0.308:2	0/1:29,7:31:36:0.194:2	0/1:133,39:31:172:0.227:2	0/1:121,46:31:167:0.275:2	0/1:102,65:30:167:0.389:2	0/1:130,38:32:168:0.226:2	0/1:114,40:31:155:0.260:2	0/1:115,38:31:153:0.248:2	0/1:108,43:31:151:0.285:2	0/1:120,44:30:164:0.268:2
chr10	51363348	.	G	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:120,46:28:166:0.277:2	0/1:123,66:30:189:0.349:2	0/1:31,11:29:42:0.262:2	0/1:142,41:30:184:0.224:2	0/1:127,58:30:185:0.314:2	0/1:113,67:29:180:0.372:2	0/1:118,59:29:177:0.333:2	0/1:139,52:29:191:0.272:2	0/1:116,39:29:155:0.252:2	0/1:115,53:29:169:0.315:2	0/1:126,42:27:168:0.250:2
chr10	51363391	.	G	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:121,59:33:180:0.328:2	0/1:123,67:32:190:0.353:2	0/1:27,21:32:48:0.438:2	0/1:137,54:33:191:0.283:2	0/1:125,65:32:190:0.342:2	0/1:112,82:32:194:0.423:2	0/1:125,59:32:184:0.321:2	0/1:145,42:32:187:0.225:2	0/1:132,44:34:176:0.250:2	0/1:108,76:32:184:0.413:2	0/1:119,64:33:184:0.350:2
chr10	51363403	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:119,64:33:183:0.350:2	0/1:124,68:33:192:0.354:2	0/1:29,26:32:55:0.473:2	0/1:125,65:33:190:0.342:2	0/1:127,63:32:190:0.332:2	0/1:112,83:32:195:0.426:2	0/1:128,58:32:186:0.312:2	0/1:139,54:33:193:0.280:2	0/1:129,54:32:183:0.295:2	0/1:105,73:32:178:0.410:2	0/1:108,74:33:182:0.407:2
chr10	51363551	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,39:30:195:0.200:2	./.	./.	./.	./.	./.
chr10	51363659	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:99,97:32:196:0.495:2	0/1:85,70:31:155:0.452:2	0/1:30,33:31:63:0.524:2	0/1:112,65:32:177:0.367:2	0/1:73,56:31:129:0.434:2	0/1:81,71:31:152:0.467:2	0/1:75,55:31:130:0.423:2	0/1:89,74:32:163:0.454:2	0/1:120,77:32:197:0.391:2	0/1:76,70:31:146:0.479:2	0/1:113,82:33:195:0.421:2
chr10	51363729	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:67,38:31:105:0.362:2	0/1:48,33:32:81:0.407:2	0/1:6,13:32:19:0.684:2	0/1:81,39:32:120:0.325:2	0/1:40,25:32:65:0.385:2	0/1:58,36:31:94:0.383:2	0/1:36,19:32:55:0.345:2	0/1:53,43:32:96:0.448:2	0/1:67,38:32:105:0.362:2	0/1:49,34:32:83:0.410:2	0/1:79,54:31:133:0.406:2
chr10	51363758	.	A	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,22:33:71:0.310:2	0/1:34,12:31:46:0.261:2	0/1:4,8:32:12:0.667:2	0/1:47,25:32:72:0.347:2	0/1:30,17:32:47:0.362:2	0/1:42,16:32:58:0.276:2	0/1:20,14:31:34:0.412:2	0/1:33,21:33:54:0.389:2	0/1:42,21:34:63:0.333:2	0/1:42,19:32:61:0.311:2	0/1:43,21:32:64:0.328:2
chr10	51364707	.	G	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:89,62:32:151:0.411:2	0/1:108,68:32:176:0.386:2	0/1:46,20:31:66:0.303:2	0/1:99,58:32:157:0.369:2	0/1:112,76:32:189:0.404:2	0/1:102,60:31:162:0.370:2	0/1:101,68:31:169:0.402:2	0/1:93,57:32:150:0.380:2	0/1:92,60:33:152:0.395:2	0/1:96,55:32:151:0.364:2	0/1:114,68:32:182:0.374:2
chr10	51364715	.	C	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:99,34:31:133:0.256:2	0/1:121,47:31:168:0.280:2	0/1:42,22:30:64:0.344:2	./.	0/1:122,47:30:169:0.278:2	0/1:122,37:31:159:0.233:2	./.	0/1:104,30:31:134:0.224:2	./.	./.	./.
chr10	51364733	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,47:31:131:0.362:2	0/1:92,37:32:129:0.287:2	0/1:42,16:30:58:0.276:2	0/1:100,46:29:146:0.315:2	0/1:72,35:30:107:0.327:2	0/1:112,54:29:166:0.325:2	0/1:66,39:31:105:0.371:2	0/1:76,45:30:121:0.372:2	0/1:100,43:31:143:0.301:2	0/1:83,40:31:123:0.325:2	0/1:111,58:30:169:0.343:2
chr10	51364758	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,44:31:135:0.326:2	0/1:73,18:33:92:0.198:2	0/1:25,10:33:35:0.286:2	0/1:97,36:32:133:0.271:2	0/1:53,31:31:84:0.369:2	0/1:107,41:32:148:0.277:2	0/1:64,24:32:89:0.273:2	0/1:64,32:32:96:0.333:2	0/1:102,33:32:135:0.244:2	0/1:73,36:33:109:0.330:2	0/1:115,53:33:168:0.315:2
chr10	51370889	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,39:27:121:0.322:2	0/1:67,32:27:99:0.323:2	0/1:16,12:29:28:0.429:2	0/1:100,62:28:162:0.383:2	0/1:94,58:28:152:0.382:2	0/1:98,59:28:157:0.376:2	0/1:93,40:28:133:0.301:2	0/1:101,57:29:158:0.361:2	0/1:109,62:29:171:0.363:2	0/1:73,69:28:142:0.486:2	0/1:47,36:26:83:0.434:2
chr10	51371565	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,43:26:131:0.331:2	0/1:57,29:28:86:0.337:2	0/1:6,9:31:15:0.600:2	0/1:80,59:29:139:0.424:2	0/1:80,50:26:131:0.385:2	0/1:81,54:27:135:0.400:2	0/1:91,58:28:149:0.389:2	0/1:76,69:28:145:0.476:2	0/1:91,64:28:155:0.413:2	0/1:52,59:28:111:0.532:2	0/1:89,62:28:153:0.411:2
chr10	51371581	.	G	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:93,57:26:150:0.380:2	0/1:74,27:28:101:0.267:2	0/1:5,7:28:12:0.583:2	0/1:82,56:26:138:0.406:2	0/1:88,43:26:132:0.328:2	0/1:74,48:26:122:0.393:2	0/1:102,46:27:148:0.311:2	0/1:75,58:28:133:0.436:2	0/1:118,65:26:184:0.355:2	0/1:70,63:27:134:0.474:2	0/1:96,69:27:165:0.418:2
chr10	51371608	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:117,47:30:164:0.287:2	0/1:77,32:30:109:0.294:2	0/1:3,3:29:6:0.500:2	0/1:65,44:30:109:0.404:2	0/1:65,46:30:111:0.414:2	0/1:49,45:28:94:0.479:2	0/1:144,50:29:194:0.258:2	0/1:67,60:29:127:0.472:2	0/1:141,53:30:194:0.273:2	0/1:55,49:30:104:0.471:2	0/1:71,64:29:135:0.474:2
chr10	51374435	rs201973475	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:120,53:33:173:0.306:2	0/1:125,66:32:191:0.346:2	0/1:47,17:32:64:0.266:2	0/1:104,87:32:191:0.455:2	0/1:135,59:32:194:0.304:2	0/1:105,86:32:191:0.450:2	0/1:131,62:32:193:0.321:2	0/1:112,79:32:191:0.414:2	0/1:108,83:33:191:0.435:2	0/1:109,82:33:191:0.429:2	0/1:123,69:33:192:0.359:2
chr10	51381453	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:107,59:33:166:0.355:2	0/1:101,92:33:193:0.477:2	0/1:27,27:32:54:0.500:2	0/1:126,48:33:174:0.276:2	0/1:104,81:32:185:0.438:2	0/1:108,71:33:179:0.397:2	0/1:106,67:33:174:0.387:2	0/1:100,71:33:171:0.415:2	0/1:89,51:34:140:0.364:2	0/1:98,51:33:149:0.342:2	0/1:99,66:32:165:0.400:2
chr10	51381481	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,69:33:170:0.406:2	0/1:108,81:33:189:0.429:2	0/1:28,32:32:60:0.533:2	0/1:114,72:32:187:0.387:2	0/1:116,71:32:187:0.380:2	0/1:103,78:32:181:0.431:2	0/1:117,66:33:183:0.361:2	0/1:122,60:33:183:0.330:2	0/1:106,50:33:156:0.321:2	0/1:95,73:32:168:0.435:2	0/1:102,73:32:175:0.417:2
chr10	51381519	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:105,66:31:171:0.386:2	0/1:115,77:32:192:0.401:2	0/1:34,30:32:64:0.469:2	0/1:115,65:32:180:0.361:2	0/1:114,78:31:192:0.406:2	0/1:108,74:32:182:0.407:2	0/1:118,70:32:188:0.372:2	0/1:102,81:32:183:0.443:2	0/1:102,58:33:161:0.363:2	0/1:97,76:31:173:0.439:2	0/1:106,70:32:176:0.398:2
chr10	51381775	.	T	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:123,55:32:178:0.309:2	0/1:135,40:32:175:0.229:2	0/1:64,24:32:88:0.273:2	0/1:128,56:33:184:0.304:2	0/1:132,49:33:181:0.271:2	0/1:146,49:32:195:0.251:2	0/1:134,54:33:188:0.287:2	0/1:121,69:32:190:0.363:2	0/1:139,49:34:188:0.261:2	0/1:131,56:32:187:0.299:2	0/1:132,58:32:190:0.305:2
chr10	51381836	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:106,90:33:196:0.459:2	0/1:123,72:32:195:0.369:2	0/1:53,51:32:104:0.490:2	0/1:112,87:33:199:0.437:2	0/1:126,71:32:197:0.360:2	0/1:122,72:32:197:0.371:2	0/1:113,86:33:199:0.432:2	0/1:114,82:33:196:0.418:2	0/1:123,74:34:197:0.376:2	0/1:107,88:33:195:0.451:2	0/1:130,68:33:198:0.343:2
chr10	51384373	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:97,84:30:181:0.464:2	0/1:118,76:30:194:0.392:2	0/1:52,22:29:74:0.297:2	0/1:122,69:30:191:0.361:2	0/1:123,62:30:185:0.335:2	0/1:124,66:29:190:0.347:2	0/1:133,64:29:197:0.325:2	0/1:106,77:30:183:0.421:2	0/1:130,64:30:194:0.330:2	0/1:123,70:30:193:0.363:2	0/1:99,84:31:183:0.459:2
chr10	51387654	.	T	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:114,82:29:196:0.418:2	0/1:105,94:29:199:0.472:2	0/1:97,99:29:197:0.505:2	0/1:117,82:30:199:0.412:2	0/1:116,82:29:198:0.414:2	0/1:121,76:30:197:0.386:2	0/1:134,64:29:198:0.323:2	0/1:128,69:30:197:0.350:2	0/1:118,77:31:195:0.395:2	0/1:120,79:30:199:0.397:2	0/1:134,63:29:197:0.320:2
chr10	51464611	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,8:28:53:0.151:2	0/1:91,14:28:105:0.133:2	0/1:23,9:30:32:0.281:2	0/1:62,9:30:71:0.127:2	0/1:56,11:31:67:0.164:2	0/1:49,4:29:53:0.075:2	./.
chr10	51464628	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,5:31:68:0.074:2	./.	./.	./.	0/1:56,4:33:60:0.067:2	./.	./.	./.
chr10	51464656	rs202010272	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,18:32:38:0.474:2	0/1:12,7:33:19:0.368:2	./.	./.	./.	0/1:27,20:32:50:0.426:2	0/1:15,6:33:23:0.286:2	./.	0/1:19,7:34:26:0.269:2	0/1:11,5:32:16:0.313:2	0/1:10,3:32:13:0.231:2
chr10	51464683	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,3:31:30:0.100:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	51464773	rs191620360	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:21,5:32:26:0.192:2	./.	0/1:2,3:32:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	51464873	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,5:32:57:0.088:2	0/1:43,4:32:47:0.085:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	51464962	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,18:33:93:0.194:2	./.	0/1:76,14:34:90:0.156:2	./.	./.
chr10	51464975	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,13:30:166:0.078:2	./.	0/1:116,6:31:122:0.049:2	./.	./.	./.
chr10	51464993	rs199828000	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,15:32:106:0.142:2
chr10	51465013	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,5:26:148:0.034:2	./.	./.	./.
chr10	51465046	.	G	T,C	.	PASS	AC=3,1;AF=0.250,0.083;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:BQ:DP:FA:SS	./.	./.	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0/1:31:97:0.134:2	./.	./.	0/1:32:115:0.078:2	0/2:33:138:0.087:2	./.	0/1:30:106:0.104:2	./.
chr10	51465097	rs4043638	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:51,5:31:57:0.089:2	0/1:25,4:26:29:0.138:2	./.	0/1:44,5:31:49:0.102:2	./.	./.	./.	./.	./.	./.	./.
chr10	51465122	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,6:27:66:0.092:2	./.	./.	./.
chr10	51465138	rs201025969	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:31:62:0.065:2	./.	./.	./.
chr10	51465139	rs4043639	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:31:60:0.067:2	./.	./.	./.
chr10	51465429	rs183573385	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:106,91:31:197:0.462:2	./.	./.	./.	./.	./.	./.
chr10	51465476	rs201859993	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:32:174:0.023:2	./.	./.	./.
chr10	51465552	rs76363375	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:32:68:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,78:33:78:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,83:32:83:1.00:2
chr10	51465650	rs199898426	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,44:32:76:0.579:2	0/1:21,21:32:42:0.500:2	./.	0/1:9,37:32:46:0.804:2	0/1:30,8:31:38:0.211:2	0/1:30,53:31:83:0.639:2	0/1:6,34:32:40:0.850:2	0/1:51,19:32:70:0.271:2	0/1:11,33:33:44:0.750:2	0/1:10,20:32:30:0.667:2	0/1:44,16:30:61:0.267:2
chr10	51465690	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,6:34:59:0.102:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	51465780	.	G	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:140,9:32:149:0.060:2	0/1:81,5:33:86:0.058:2	./.	0/1:118,8:31:126:0.063:2	0/1:97,8:31:105:0.076:2	0/1:122,21:31:143:0.147:2	0/1:93,4:30:98:0.041:2	./.	0/1:98,14:32:112:0.125:2	0/1:106,16:31:122:0.131:2	0/1:175,5:31:181:0.028:2
chr10	51465783	rs4043619	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:136,21:30:157:0.134:2	0/1:81,10:30:91:0.110:2	0/1:13,3:30:16:0.188:2	0/1:116,25:31:142:0.177:2	0/1:86,29:30:115:0.252:2	0/1:123,28:31:151:0.185:2	0/1:94,12:31:106:0.113:2	0/1:144,37:30:181:0.204:2	0/1:107,20:31:127:0.157:2	0/1:107,24:30:131:0.183:2	0/1:155,42:31:197:0.213:2
chr10	51465788	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:122,37:32:159:0.233:2	./.	0/1:137,31:32:168:0.185:2	0/1:92,25:32:117:0.214:2	./.	./.	0/1:114,25:31:139:0.180:2	./.
chr10	51465865	rs374114362	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:130,27:30:158:0.172:2	0/1:160,27:31:187:0.144:2	./.	0/1:155,32:29:187:0.171:2	0/1:166,26:29:192:0.135:2	0/1:162,27:29:189:0.143:2	0/1:139,54:30:194:0.280:2	0/1:160,31:33:191:0.162:2	0/1:158,31:32:189:0.164:2	0/1:152,31:31:184:0.169:2	./.
chr10	51465920	rs4043622	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:172,21:31:193:0.109:2	0/1:159,21:31:180:0.117:2	0/1:108,5:31:113:0.044:2	0/1:174,23:32:197:0.117:2	0/1:187,8:32:195:0.041:2	0/1:182,16:31:198:0.081:2	0/1:180,18:31:198:0.091:2	0/1:195,4:32:199:0.020:2	0/1:176,22:33:198:0.111:2	0/1:182,17:31:199:0.085:2	0/1:184,9:32:193:0.047:2
chr10	51549545	rs4935176	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,100:31:101:0.990:2	0/1:0,62:32:62:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,90:31:90:1.00:2	0/1:0,70:31:70:1.00:2	0/1:0,77:31:77:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,99:31:99:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,117:32:117:1.00:2	0/1:0,114:32:114:1.00:2
chr10	51568378	rs10761581	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,95:32:97:0.979:2	0/1:0,64:32:64:1.00:2	0/1:13,11:33:24:0.458:2	./.	0/1:56,62:30:118:0.525:2	0/1:65,71:32:136:0.522:2	0/1:59,57:31:116:0.491:2	0/1:55,85:32:140:0.607:2	0/1:70,78:32:148:0.527:2	0/1:110,4:33:114:0.035:2	./.
chr10	51579211	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:32:43:0.093:2
chr10	51582894	rs41306524	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,27:31:63:0.429:2	./.	0/1:13,20:32:33:0.606:2	0/1:22,24:32:46:0.522:2	0/1:38,26:31:64:0.406:2	./.	0/1:24,28:31:52:0.538:2	./.
chr10	51584623	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,5:32:92:0.054:2
chr10	51584644	rs117257055	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:32:102:0.039:2
chr10	51584652	rs373872053	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:32:96:0.042:2
chr10	51584865	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,5:31:73:0.068:2	./.	./.	./.	./.	./.
chr10	51585232	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:28:59:0.068:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	51585275	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,3:33:56:0.054:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	51607097	.	A	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:102,95:29:197:0.482:2	0/1:109,88:28:197:0.447:2	0/1:108,86:28:194:0.443:2	0/1:109,87:30:196:0.444:2	0/1:116,81:28:198:0.411:2	0/1:117,81:29:198:0.409:2	0/1:118,77:29:195:0.395:2	0/1:100,96:29:196:0.490:2	0/1:119,80:30:199:0.402:2	0/1:105,88:29:193:0.456:2	0/1:118,76:29:194:0.392:2
chr10	51610377	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,92:30:193:0.477:2	0/1:103,93:29:196:0.474:2	0/1:40,35:30:75:0.467:2	0/1:104,93:30:197:0.472:2	0/1:120,74:30:196:0.381:2	0/1:117,81:29:198:0.409:2	0/1:114,79:30:193:0.409:2	0/1:101,93:30:194:0.479:2	0/1:108,90:31:198:0.455:2	0/1:106,90:29:196:0.459:2	0/1:98,98:29:196:0.500:2
chr10	51612914	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:133,53:33:186:0.285:2	0/1:99,68:33:167:0.407:2	0/1:70,47:31:118:0.402:2	0/1:114,74:33:188:0.394:2	0/1:123,69:32:192:0.359:2	0/1:128,69:33:197:0.350:2	0/1:130,65:33:196:0.333:2	0/1:124,69:33:193:0.358:2	0/1:123,65:34:188:0.346:2	0/1:122,59:33:181:0.326:2	0/1:124,61:33:186:0.330:2
chr10	51612975	.	A	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:124,50:30:174:0.287:2	0/1:108,69:31:179:0.390:2	0/1:88,28:31:116:0.241:2	0/1:140,48:32:188:0.255:2	0/1:132,55:31:187:0.294:2	0/1:132,53:31:185:0.286:2	0/1:138,46:32:184:0.250:2	0/1:138,39:31:177:0.220:2	0/1:136,46:33:182:0.253:2	0/1:139,49:32:188:0.261:2	0/1:131,46:31:177:0.260:2
chr10	51613231	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:97,75:33:172:0.436:2	0/1:116,74:32:190:0.389:2	0/1:39,22:31:61:0.361:2	0/1:92,59:32:151:0.391:2	0/1:99,81:33:180:0.450:2	0/1:110,57:33:167:0.341:2	0/1:93,65:33:158:0.411:2	0/1:92,59:32:151:0.391:2	0/1:112,44:33:156:0.282:2	0/1:122,53:32:175:0.303:2	0/1:91,62:32:153:0.405:2
chr10	51613269	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:96,81:33:177:0.458:2	0/1:95,68:32:163:0.417:2	0/1:34,23:32:57:0.404:2	0/1:100,78:32:178:0.438:2	0/1:99,66:32:165:0.400:2	0/1:114,71:32:185:0.384:2	0/1:90,68:33:158:0.430:2	0/1:97,75:33:172:0.436:2	0/1:102,69:33:171:0.404:2	0/1:108,75:33:183:0.410:2	0/1:104,71:33:175:0.406:2
chr10	51613297	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:96,82:32:178:0.461:2	0/1:109,84:32:194:0.435:2	0/1:30,21:31:51:0.412:2	0/1:109,72:32:181:0.398:2	0/1:116,71:31:187:0.380:2	0/1:107,78:32:185:0.422:2	0/1:100,82:32:182:0.451:2	0/1:107,69:33:176:0.392:2	0/1:103,73:33:176:0.415:2	0/1:109,71:31:180:0.394:2	0/1:95,82:33:178:0.463:2
chr10	51620317	rs200147310	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:89,95:33:184:0.516:2	0/1:82,105:32:187:0.561:2	0/1:33,38:32:71:0.535:2	0/1:110,84:32:194:0.433:2	0/1:107,86:32:193:0.446:2	0/1:88,101:32:189:0.534:2	0/1:111,81:33:192:0.422:2	0/1:124,67:33:191:0.351:2	0/1:102,92:34:194:0.474:2	0/1:102,86:33:188:0.457:2	0/1:114,81:33:195:0.415:2
chr10	51623147	rs373071373	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,69:29:130:0.531:2	0/1:49,68:32:117:0.581:2	0/1:24,26:29:50:0.520:2	0/1:92,85:30:177:0.480:2	0/1:78,83:29:161:0.516:2	0/1:107,63:30:170:0.371:2	0/1:57,75:30:132:0.568:2	0/1:84,88:30:172:0.512:2	0/1:80,93:31:173:0.538:2	0/1:69,74:29:143:0.517:2	0/1:90,86:30:177:0.489:2
chr10	51623174	rs141118546	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:92,62:25:155:0.403:2	0/1:48,44:29:92:0.478:2	0/1:15,15:27:30:0.500:2	0/1:89,65:25:156:0.422:2	0/1:78,62:26:141:0.443:2	0/1:109,55:25:164:0.335:2	0/1:81,73:26:154:0.474:2	0/1:97,72:25:170:0.426:2	0/1:93,86:25:181:0.480:2	0/1:93,69:25:162:0.426:2	0/1:92,51:26:144:0.357:2
chr10	51623190	rs137912947	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:90,69:25:160:0.434:2	0/1:45,42:26:87:0.483:2	0/1:12,12:30:24:0.500:2	0/1:86,80:26:166:0.482:2	0/1:89,76:26:166:0.461:2	0/1:108,59:25:167:0.353:2	0/1:78,90:26:169:0.536:2	0/1:89,84:27:173:0.486:2	0/1:86,86:26:173:0.500:2	0/1:97,76:24:174:0.439:2	0/1:89,70:24:159:0.440:2
chr10	51827763	rs11552621	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:34:3:1.00:2	./.	./.	./.	./.
chr10	51827934	rs55875820	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,14:29:23:0.609:2	0/1:9,12:31:21:0.571:2	0/1:4,5:26:9:0.556:2	0/1:0,39:28:39:1.00:2	0/1:1,19:30:20:0.950:2	0/1:14,17:29:31:0.548:2	./.	0/1:5,23:29:28:0.821:2	0/1:17,20:30:37:0.541:2	0/1:1,34:31:35:0.971:2	0/1:1,13:30:14:0.929:2
chr10	51847030	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,24:30:183:0.131:2	./.	./.	./.	./.	./.
chr10	51847061	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,27:32:194:0.139:2	./.	./.	./.	./.	./.
chr10	51850549	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:187,9:31:196:0.046:2	0/1:185,7:30:193:0.036:2	./.	0/1:184,9:32:193:0.047:2	0/1:187,13:29:200:0.065:2	0/1:187,12:31:199:0.060:2	0/1:184,12:30:197:0.061:2	0/1:191,7:31:198:0.035:2	./.	./.	./.
chr10	51850611	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,6:30:196:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr10	51851251	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,6:30:75:0.080:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	51853125	rs199799735	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,9:29:190:0.047:2	./.	./.	./.	./.	./.
chr10	51853140	rs200918302	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,11:32:186:0.059:2
chr10	51853633	rs199520696	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:163,27:32:192:0.142:2	0/1:155,38:32:193:0.197:2	0/1:48,25:31:73:0.342:2	0/1:177,17:30:194:0.088:2	./.	0/1:180,16:31:196:0.082:2	./.	./.	./.	./.	./.
chr10	51854886	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:32:122:0.033:2	./.	./.	./.	./.
chr10	51855397	rs200893903	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,5:26:136:0.037:2	0/1:38,3:32:41:0.073:2	./.	./.	./.	./.
chr10	51855408	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,13:29:132:0.098:2	./.	./.	./.	./.	./.
chr10	51855449	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:62,27:30:89:0.303:2	0/1:48,12:32:60:0.200:2	./.	./.	./.	./.	0/1:63,20:32:83:0.241:2	./.	0/1:12,61:33:73:0.836:2	./.	0/1:47,32:30:79:0.405:2
chr10	51855450	.	T	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:60,27:33:87:0.310:2	0/1:49,12:33:61:0.197:2	./.	./.	./.	./.	0/1:63,20:33:83:0.241:2	./.	0/1:12,61:34:73:0.836:2	./.	0/1:48,33:31:81:0.407:2
chr10	51855520	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,48:32:197:0.245:2	./.	./.	./.	./.	./.
chr10	51859751	rs201610656	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:76,11:25:88:0.126:2	./.	./.	0/1:3,9:29:12:0.750:2	./.	./.	./.	./.	./.	./.	./.
chr10	51859758	rs200416566	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,99:31:114:0.868:2	0/1:88,69:32:157:0.439:2	0/1:73,68:31:141:0.482:2	./.	0/1:83,78:32:161:0.484:2	0/1:20,95:32:115:0.826:2	0/1:80,92:31:172:0.535:2
chr10	51863872	rs199954057	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:188,6:32:194:0.031:2	0/1:182,10:31:192:0.052:2	0/1:40,3:32:43:0.070:2	0/1:194,5:32:199:0.025:2	0/1:153,5:32:158:0.032:2	0/1:191,7:29:198:0.035:2	0/1:164,10:32:175:0.057:2	0/1:192,7:33:199:0.035:2	0/1:193,5:33:198:0.025:2	0/1:187,8:31:195:0.041:2	0/1:185,10:32:195:0.051:2
chr10	51866125	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,32:33:129:0.248:2	./.	./.	./.
chr10	51877774	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,4:31:57:0.070:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	51885927	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,5:32:24:0.208:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	51886949	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,18:31:96:0.189:2	./.	0/1:95,4:31:99:0.040:2	./.	./.	./.
chr10	51887396	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,27:30:135:0.200:2	./.	./.	./.	./.	./.
chr10	51890805	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,17:31:36:0.472:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	51890811	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,12:30:159:0.075:2	./.	./.	./.	./.	./.
chr10	51893265	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:126,4:30:130:0.031:2	./.	./.	./.	./.	./.	./.
chr10	51949283	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:122,5:31:127:0.039:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	51952464	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,5:33:114:0.044:2	./.	./.
chr10	52002980	rs3739979	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,88:32:189:0.466:2	./.	0/1:108,87:32:195:0.446:2	0/1:117,76:31:193:0.394:2	0/1:97,98:32:195:0.503:2	./.	./.	0/1:89,85:32:174:0.489:2
chr10	52005153	rs7097319	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,47:29:98:0.480:2	./.	0/1:52,28:29:80:0.350:2	0/1:64,43:30:107:0.402:2	0/1:66,59:30:127:0.472:2	./.	./.	0/1:56,35:30:91:0.385:2
chr10	52103707	rs10763354	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,36:30:64:0.563:2	0/1:34,27:29:61:0.443:2	0/1:52,29:30:81:0.358:2	0/1:38,36:30:74:0.486:2	0/1:54,42:30:97:0.438:2	0/1:37,30:31:67:0.448:2	./.	0/1:0,91:30:91:1.00:2
chr10	52504892	rs201594069	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,4:32:10:0.444:2	./.	./.	./.	./.
chr10	52509111	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,13:33:187:0.070:2	./.	./.
chr10	52512235	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.	./.	./.	./.
chr10	52512292	rs201860672	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:126,4:30:130:0.031:2	./.	0/1:190,7:30:197:0.036:2	./.	./.	0/1:188,7:29:195:0.036:2	./.	./.	./.
chr10	52573698	rs41274048	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,174:31:177:0.983:2	0/1:77,70:31:147:0.476:2	./.	./.	./.	./.	./.	./.
chr10	52573772	rs41274050	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,45:32:90:0.506:2	./.
chr10	52610540	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,4:32:71:0.056:2	./.	./.	./.	./.	./.	./.	./.
chr10	52913020	rs55806342	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,75:33:132:0.568:2	0/1:51,39:33:90:0.433:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	53059406	rs2043556	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,5:33:8:0.625:2	0/1:5,3:31:8:0.375:2	./.	./.	./.	./.	./.	./.	0/1:15,3:33:18:0.167:2	0/1:0,13:32:13:1.00:2	./.
chr10	53457686	rs202146491	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,24:31:44:0.545:2
chr10	53457687	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,24:31:45:0.533:2
chr10	53457688	rs200381309	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,24:31:45:0.533:2
chr10	53458047	rs3740228	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,67:29:132:0.508:2	0/1:38,21:31:59:0.356:2	./.	./.	./.	0/1:72,80:30:152:0.526:2	0/1:85,58:31:143:0.406:2	./.	./.	./.	0/1:77,61:30:139:0.442:2
chr10	53458167	rs3824686	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,20:30:34:0.588:2
chr10	53458998	rs2292828	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,16:29:47:0.340:2	0/1:9,13:31:22:0.591:2	./.	./.	./.	0/1:21,19:30:40:0.475:2	0/1:27,19:31:46:0.413:2	./.	./.	./.	0/1:27,21:30:48:0.438:2
chr10	53822301	rs34997494	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,36:33:67:0.537:2	0/1:34,38:32:72:0.528:2	./.	./.	./.	./.
chr10	54074757	rs2241529	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,90:29:91:0.989:2	0/1:0,44:29:44:1.00:2	0/1:0,19:31:19:1.00:2	0/1:92,68:29:160:0.425:2	./.	0/1:0,142:30:142:1.00:2	0/1:103,55:29:158:0.348:2	0/1:79,66:29:145:0.455:2	0/1:0,123:31:123:1.00:2	0/1:44,44:30:89:0.500:2	./.
chr10	54527968	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:34:199:0.020:2	./.	./.
chr10	54528266	rs930507	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,18:34:40:0.450:2	0/1:9,3:31:12:0.250:2	./.	0/1:0,24:32:24:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,17:32:17:1.00:2	0/1:2,11:32:13:0.846:2	0/1:20,10:33:30:0.333:2	0/1:6,15:33:21:0.714:2	0/1:0,34:33:34:1.00:2
chr10	54531235	rs1800450	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:86,56:31:142:0.394:2	0/1:39,35:31:74:0.473:2	./.	./.	./.	./.	./.	./.	./.	0/1:88,65:31:153:0.425:2	./.
chr10	54531242	rs5030737	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:92,78:30:171:0.459:2	./.	./.	./.	./.	./.	0/1:74,61:31:136:0.452:2
chr10	55566395	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:138,4:31:142:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr10	55566406	rs17704703	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:66,63:28:129:0.488:2	0/1:36,33:27:69:0.478:2	./.	0/1:98,89:29:187:0.476:2	./.	0/1:4,188:28:193:0.979:2	./.	./.	./.	0/1:67,51:29:118:0.432:2	./.
chr10	55568972	rs11003863	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,55:30:112:0.491:2	./.	./.	./.	0/1:80,52:30:132:0.394:2	0/1:56,61:30:117:0.521:2	./.	./.
chr10	55582905	rs10825114	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,22:31:49:0.449:2	./.	./.	./.	./.	./.	./.	./.
chr10	55584850	rs145964073	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,14:32:44:0.318:2	./.
chr10	55755491	rs2135720	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,44:32:88:0.500:2	./.	0/1:39,34:32:73:0.466:2	./.	0/1:37,34:32:71:0.479:2	0/1:0,60:33:60:1.00:2	0/1:33,26:32:59:0.441:2	./.
chr10	55782767	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:158,4:32:162:0.025:2	./.	./.	./.	./.	./.	./.
chr10	55949151	rs16905686	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,6:29:9:0.667:2	0/1:54,18:32:72:0.250:2	./.	0/1:28,51:31:79:0.646:2	./.	0/1:48,34:31:82:0.415:2	0/1:45,40:33:85:0.471:2	./.	./.
chr10	55955444	rs4935502	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,5:33:8:0.625:2	0/1:56,39:33:95:0.411:2	./.	0/1:36,27:32:63:0.429:2	./.	0/1:34,29:33:63:0.460:2	0/1:68,28:34:96:0.292:2	./.	./.
chr10	55955485	rs7921598	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,37:31:77:0.481:2	./.	0/1:45,37:33:82:0.451:2	0/1:40,79:33:119:0.664:2	0/1:48,49:32:97:0.505:2	0/1:58,60:33:118:0.508:2
chr10	55955610	rs10825269	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,26:32:64:0.406:2	./.	0/1:22,31:32:53:0.585:2	0/1:44,46:33:90:0.511:2	0/1:26,25:32:51:0.490:2	0/1:60,36:33:96:0.375:2
chr10	56128976	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,5:28:88:0.057:2	./.
chr10	56287569	rs41274636	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,21:31:35:0.600:2	0/1:28,10:32:38:0.263:2	./.	./.
chr10	56423968	rs11004439	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:31:5:0.800:2	./.	./.	./.	./.	./.	./.	./.	0/1:19,16:30:35:0.457:2
chr10	58118630	rs2241666	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,70:29:71:0.986:2	0/1:2,58:28:60:0.967:2	0/1:24,5:29:29:0.172:2	0/1:92,49:29:141:0.348:2	./.	0/1:61,64:29:125:0.512:2	0/1:67,51:29:118:0.432:2	0/1:0,122:29:122:1.00:2	0/1:66,53:30:119:0.445:2	0/1:1,115:29:116:0.991:2	0/1:84,46:28:130:0.354:2
chr10	58119248	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,4:30:82:0.049:2	./.	./.	./.	./.	./.	./.	./.
chr10	58119825	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:33:57:0.070:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	60145342	rs1937	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,27:33:58:0.466:2	0/1:21,9:32:30:0.300:2	./.	0/1:52,49:33:101:0.485:2	0/1:72,59:33:131:0.450:2	./.	./.	0/1:67,65:32:132:0.492:2	./.	./.	./.
chr10	60154186	rs41283688	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,52:32:128:0.409:2	./.	./.	./.	./.	./.
chr10	60154203	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:33:139:0.029:2	./.	./.
chr10	60573753	rs9416746	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,129:32:130:0.992:2	0/1:0,98:32:98:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,176:32:176:1.00:2	0/1:60,57:32:118:0.487:2	0/1:104,96:32:200:0.480:2	0/1:1,129:32:130:0.992:2	0/1:0,139:32:139:1.00:2	./.	0/1:88,48:32:136:0.353:2	./.
chr10	60577393	rs4344442	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,104:33:104:1.00:2	0/1:0,54:33:54:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,129:33:129:1.00:2	0/1:71,50:32:121:0.413:2	0/1:81,54:33:135:0.400:2	0/1:0,118:33:118:1.00:2	0/1:0,121:33:122:1.00:2	./.	0/1:39,38:33:77:0.494:2	./.
chr10	60588553	rs4948550	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,40:32:41:1.00:2	0/1:20,11:32:31:0.355:2	0/1:17,13:30:30:0.433:2	0/1:4,44:31:48:0.917:2	0/1:2,41:31:43:0.953:2	./.	0/1:30,16:32:46:0.348:2	./.
chr10	61005244	rs2452505	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:33:76:1.00:2	0/1:0,41:33:41:1.00:2	0/1:7,8:33:15:0.533:2	0/1:50,50:33:102:0.500:2	0/1:0,72:32:73:1.00:2	0/1:0,81:33:81:1.00:2	0/1:0,90:33:90:1.00:2	0/1:72,63:33:135:0.467:2	0/1:41,43:34:84:0.512:2	0/1:0,77:33:77:1.00:2	0/1:76,70:34:146:0.479:2
chr10	61043244	rs61738820	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,15:31:30:0.500:2	./.	./.	0/1:15,18:32:33:0.545:2	./.	0/1:17,13:32:30:0.433:2	./.
chr10	61115712	rs181247579	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,24:31:53:0.453:2	./.	./.	./.	./.	./.	./.	./.
chr10	61414011	rs2242206	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,72:32:186:0.389:2	0/1:87,69:31:156:0.442:2	0/1:108,84:31:192:0.438:2
chr10	61414127	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:31:50:0.080:2	./.	./.	./.	./.	./.
chr10	61414176	rs56370926	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	0/1:3,6:31:9:0.667:2	./.	./.	./.	./.
chr10	61552692	rs1053266	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,12:27:19:0.632:2	0/1:1,113:29:115:0.991:2	0/1:2,138:29:140:0.986:2	./.	./.	./.	0/1:1,115:29:118:0.991:2	./.	./.
chr10	61552763	rs61740504	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,94:30:192:0.490:2	./.	./.	./.	./.	./.	./.
chr10	61552774	rs1053265	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,118:29:119:1.00:2	0/1:0,29:28:30:1.00:2	0/1:2,162:28:170:0.988:2	0/1:3,165:28:172:0.982:2	./.	./.	./.	./.	0/1:1,171:28:181:0.994:2	0/1:86,91:27:185:0.514:2
chr10	61665886	rs1171830	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,17:28:26:0.654:2	0/1:3,10:29:13:0.769:2	./.	0/1:0,74:27:74:1.00:2	0/1:0,104:27:104:1.00:2	0/1:30,28:25:58:0.483:2	0/1:54,41:26:95:0.432:2	0/1:52,33:27:85:0.388:2	0/1:31,22:27:53:0.415:2	0/1:37,19:27:56:0.339:2	./.
chr10	61718447	rs200484770	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,20:30:42:0.476:2	./.	./.	./.	./.
chr10	61719159	rs10994091	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,41:31:41:1.00:2	0/1:0,31:32:31:1.00:2	./.	./.	./.	0/1:24,12:31:36:0.333:2	0/1:27,17:31:44:0.386:2	0/1:1,43:30:44:0.977:2	0/1:45,18:31:63:0.286:2	0/1:0,30:32:30:1.00:2	0/1:1,47:32:49:0.979:2
chr10	61719385	rs12776262	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:3,148:31:151:0.980:2	0/1:4,130:32:134:0.970:2	0/1:20,12:32:32:0.375:2	./.	./.	./.	./.	0/1:2,149:32:151:0.987:2	./.	0/1:0,138:32:138:1.00:2	0/1:2,180:32:182:0.989:2
chr10	61719682	rs41274664	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,20:31:37:0.541:2	0/1:16,11:31:27:0.407:2	./.	./.	./.	./.	./.
chr10	61828656	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:32:161:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	61828954	rs7923682	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,84:33:198:0.424:2	0/1:99,93:33:192:0.484:2	./.	./.	./.	./.
chr10	61831271	rs10821668	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:73,63:33:136:0.463:2	0/1:40,40:33:80:0.500:2	./.	./.	./.	./.	./.	0/1:63,58:32:121:0.479:2	./.	./.	./.
chr10	61831290	rs28932171	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,48:32:97:0.495:2	0/1:47,36:33:83:0.434:2	./.	./.	./.	./.
chr10	61831744	rs10740006	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:22,20:31:42:0.476:2	0/1:12,4:31:16:0.250:2	./.	./.	./.	./.	./.	0/1:30,25:29:55:0.455:2	./.	./.	./.
chr10	61831984	rs11599164	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,43:30:105:0.410:2	0/1:30,42:31:74:0.583:2	./.	./.	./.	./.
chr10	61832626	rs41274674	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,67:30:164:0.409:2	0/1:86,90:31:176:0.511:2
chr10	61834156	rs3134609	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,80:31:184:0.435:2	./.	./.
chr10	61834573	rs17208576	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,31:32:84:0.369:2	0/1:27,29:32:56:0.518:2	./.	./.	./.	./.
chr10	61835057	rs117475706	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,48:32:101:0.475:2	0/1:43,41:32:84:0.488:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	61868716	rs3750800	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:24,18:33:42:0.429:2	0/1:12,11:33:23:0.478:2	./.	0/1:25,23:33:48:0.479:2	./.	./.	./.	./.	0/1:39,23:32:62:0.371:2	./.	./.
chr10	61900132	rs190645026	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,33:32:77:0.429:2	./.	./.	./.	./.	./.	./.
chr10	61965625	rs2297979	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,40:30:108:0.370:2	./.	0/1:6,85:30:91:0.934:2	./.	0/1:42,41:31:83:0.494:2	0/1:1,125:31:126:0.992:2
chr10	61973217	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:31:38:0.079:2	./.	./.	./.	./.	./.
chr10	62029934	rs71495633	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,17:33:30:0.567:2	./.	./.
chr10	62444407	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:30:109:0.037:2	./.	./.	./.	./.	./.
chr10	62444420	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:33:101:0.040:2	./.	./.	./.	./.	./.
chr10	62444447	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,3:34:74:0.041:2	./.	./.	./.
chr10	62444766	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:157,4:31:161:0.025:2	./.	./.	0/1:159,8:33:167:0.048:2	0/1:122,4:32:126:0.032:2	0/1:166,4:32:170:0.024:2	0/1:145,5:28:150:0.033:2	0/1:173,6:27:179:0.034:2	./.	./.	0/1:182,4:32:186:0.022:2
chr10	62444808	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:172,8:31:180:0.044:2	./.	0/1:164,5:31:169:0.030:2	./.	0/1:158,6:30:164:0.037:2	./.	./.	./.
chr10	62444822	rs1837949	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,90:32:192:0.469:2	0/1:40,54:31:94:0.574:2	./.	./.	0/1:85,67:32:152:0.441:2	0/1:94,95:33:189:0.503:2	0/1:75,81:33:156:0.519:2	0/1:108,86:33:194:0.443:2
chr10	62444866	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:115,7:30:122:0.057:2	./.	./.	./.	./.	0/1:185,6:28:191:0.031:2	./.
chr10	62444896	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:113,4:31:117:0.034:2	./.	./.	./.	./.	./.	./.
chr10	62444900	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:112,4:34:116:0.034:2	./.	./.	./.	./.	./.	./.
chr10	62444965	rs1837950	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,82:29:169:0.485:2	0/1:65,70:29:135:0.519:2	0/1:15,6:30:21:0.286:2	0/1:89,94:29:183:0.514:2	0/1:53,54:29:107:0.505:2	0/1:1,156:29:157:0.994:2	0/1:1,118:30:119:0.992:2	0/1:80,78:29:158:0.494:2	0/1:0,180:30:180:1.00:2	0/1:0,159:30:159:1.00:2	0/1:62,104:29:166:0.627:2
chr10	62445028	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,5:33:166:0.030:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	62445040	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,5:33:156:0.032:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	62648445	rs138917834	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,13:28:25:0.520:2
chr10	63170292	rs7083475	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,77:32:159:0.484:2	0/1:101,77:32:178:0.433:2	0/1:73,87:33:160:0.544:2	./.	./.	0/1:2,144:34:146:0.986:2	0/1:66,57:33:123:0.463:2	0/1:73,53:33:126:0.421:2
chr10	63172694	rs16916115	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:19,7:28:26:0.269:2	0/1:15,4:29:19:0.211:2	./.	./.	./.	./.	0/1:13,5:29:18:0.278:2	./.	./.	./.	./.
chr10	63520698	rs1992625	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,61:32:61:1.00:2	0/1:0,43:33:43:1.00:2	0/1:3,3:32:6:0.500:2	./.	0/1:0,72:32:72:1.00:2	0/1:38,41:32:79:0.519:2	0/1:0,62:33:62:1.00:2	0/1:42,55:32:97:0.567:2	./.	0/1:0,66:32:66:1.00:2	0/1:0,83:33:83:1.00:2
chr10	63829539	rs76296217	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,20:32:35:0.571:2	0/1:18,12:33:30:0.400:2	./.
chr10	63958112	rs3125734	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,25:28:45:0.556:2	0/1:15,22:26:37:0.595:2	./.	./.	0/1:22,29:26:51:0.569:2	0/1:34,29:28:63:0.460:2	0/1:1,37:28:38:0.974:2	0/1:37,33:27:70:0.471:2	0/1:31,27:27:58:0.466:2	./.	0/1:27,12:25:39:0.308:2
chr10	63964653	rs41274060	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,18:32:18:1.00:2	0/1:0,22:32:22:1.00:2	./.	./.	./.	./.	./.	0/1:18,13:32:31:0.419:2	0/1:22,19:33:41:0.463:2	0/1:9,15:31:24:0.625:2	0/1:22,18:33:40:0.450:2
chr10	63977980	rs61850830	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,14:31:35:0.400:2	./.	0/1:0,28:28:28:1.00:2	./.	./.	./.	./.	./.
chr10	63995983	rs3852448	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,110:30:111:0.991:2	0/1:2,81:31:83:0.976:2	0/1:14,13:28:27:0.481:2	0/1:64,55:29:119:0.462:2	0/1:53,49:29:102:0.480:2	0/1:1,95:28:96:0.990:2	0/1:0,102:29:102:1.00:2	0/1:0,111:29:111:1.00:2	0/1:0,134:30:134:1.00:2	0/1:0,100:30:100:1.00:2	0/1:98,51:29:149:0.342:2
chr10	64000878	rs1368158	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,57:33:57:1.00:2	0/1:0,38:33:38:1.00:2	0/1:5,3:34:8:0.375:2	./.	0/1:31,15:32:46:0.326:2	./.	0/1:0,34:33:34:1.00:2	0/1:1,48:33:49:0.980:2	0/1:0,43:34:43:1.00:2	0/1:0,45:32:45:1.00:2	0/1:45,50:33:95:0.526:2
chr10	64159333	rs3758490	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:29,20:31:49:0.408:2	0/1:9,9:32:18:0.500:2	./.	0/1:0,43:31:43:1.00:2	./.	0/1:29,18:31:47:0.383:2	./.	0/1:1,74:30:75:0.987:2	0/1:30,23:32:53:0.434:2	0/1:0,42:32:42:1.00:2	0/1:28,19:31:47:0.404:2
chr10	64415184	rs7076156	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:53,39:30:92:0.424:2	0/1:27,20:29:47:0.426:2	./.	0/1:2,58:29:60:0.967:2	0/1:31,46:29:77:0.597:2	0/1:49,40:30:89:0.449:2	0/1:41,40:30:81:0.494:2	0/1:59,47:29:106:0.443:2	0/1:0,92:29:92:1.00:2	0/1:0,82:29:82:1.00:2	0/1:44,46:28:90:0.511:2
chr10	64564892	rs2236295	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,6:32:6:1.00:2	0/1:2,7:31:9:0.778:2	./.	./.
chr10	64564934	rs10995311	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.	./.	0/1:0,9:29:9:1.00:2	0/1:3,4:29:7:0.571:2	./.	0/1:3,4:30:7:0.571:2
chr10	64565011	rs61744064	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,26:30:26:1.00:2	0/1:0,29:31:29:1.00:2	./.	./.	0/1:15,13:31:28:0.464:2	0/1:17,29:31:46:0.630:2	./.	./.	0/1:17,12:31:29:0.414:2	./.	./.
chr10	64566258	rs224082	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:31:8:0.375:2	./.	0/1:29,33:31:62:0.532:2	0/1:61,42:29:103:0.408:2	./.	./.	./.	0/1:31,17:30:48:0.354:2	0/1:57,53:31:110:0.482:2
chr10	64566572	rs10995312	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,49:33:50:0.980:2	0/1:1,28:32:29:0.966:2	./.	./.	0/1:12,7:32:19:0.368:2	0/1:17,12:30:29:0.414:2	./.	./.	0/1:20,19:32:39:0.487:2	./.	./.
chr10	64567364	rs1509964	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,28:31:29:0.966:2	0/1:0,18:31:18:1.00:2	./.	./.	0/1:13,15:30:28:0.536:2	0/1:25,14:29:39:0.359:2	./.	./.	0/1:16,22:31:38:0.579:2	./.	./.
chr10	64567938	rs9990	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,37:32:37:1.00:2	0/1:0,28:32:28:1.00:2	0/1:6,3:30:9:0.333:2	./.	0/1:13,12:31:25:0.480:2	0/1:28,19:30:47:0.404:2	./.	./.	0/1:25,26:33:51:0.510:2	./.	./.
chr10	64573771	rs224083	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,114:30:115:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,23:29:23:1.00:2	0/1:0,170:29:170:1.00:2	0/1:0,127:29:128:1.00:2	0/1:0,168:29:169:1.00:2	0/1:0,143:29:143:1.00:2	0/1:0,149:30:149:1.00:2	0/1:0,112:31:113:1.00:2	0/1:0,126:30:126:1.00:2	0/1:0,153:29:153:1.00:2
chr10	64573939	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:34:154:0.026:2	./.	./.	./.	./.	./.
chr10	64913275	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:30:38:0.105:2	./.	./.	./.
chr10	64913306	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:32:59:0.068:2	./.	./.	./.
chr10	64913517	rs145813277	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,20:31:103:0.194:2	./.	./.	./.	./.	0/1:129,27:31:156:0.173:2
chr10	64913597	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,12:33:99:0.121:2	./.	./.	./.	./.	0/1:146,12:32:158:0.076:2
chr10	64927823	rs1935	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:30:66:1.00:2	0/1:0,43:29:43:1.00:2	0/1:7,6:30:13:0.462:2	0/1:49,52:30:101:0.515:2	./.	0/1:36,31:29:67:0.463:2	0/1:33,34:30:67:0.507:2	0/1:0,88:30:88:1.00:2	0/1:0,94:30:94:1.00:2	0/1:4,64:29:68:0.941:2	0/1:1,104:29:105:0.990:2
chr10	64945364	rs3211105	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:32:24:1.00:2	0/1:0,18:32:18:1.00:2	0/1:3,6:31:9:0.667:2	0/1:19,11:32:30:0.367:2	0/1:14,11:32:25:0.440:2	0/1:1,31:31:32:0.969:2	0/1:0,24:30:24:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,54:31:54:1.00:2
chr10	64952835	rs41274064	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,17:32:39:0.436:2	./.	./.	./.	./.
chr10	64967445	rs1904294	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:32:85:1.00:2	0/1:0,56:32:56:1.00:2	0/1:1,16:32:17:0.941:2	0/1:0,69:32:69:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,97:31:97:1.00:2	0/1:1,94:32:95:0.989:2	0/1:0,75:33:76:1.00:2	0/1:0,69:33:69:1.00:2	0/1:0,102:32:102:1.00:2
chr10	64973978	rs41274068	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,32:30:74:0.432:2	./.	./.	./.	./.	./.
chr10	64974537	rs10761725	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:31:71:1.00:2	0/1:0,52:31:52:1.00:2	0/1:3,5:30:8:0.625:2	0/1:37,30:31:67:0.448:2	0/1:26,32:30:58:0.552:2	0/1:1,63:30:64:0.984:2	0/1:0,62:31:62:1.00:2	0/1:2,74:31:76:0.974:2	0/1:0,92:31:92:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,99:32:99:1.00:2
chr10	65370085	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:31:58:0.069:2	./.	./.	./.	./.	./.
chr10	65380587	rs1133386	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,6:30:31:0.194:2	0/1:10,4:30:14:0.286:2	./.	./.	./.	0/1:9,7:27:16:0.438:2	./.	./.	./.	./.	./.
chr10	68040325	rs4548513	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,25:32:47:0.532:2	0/1:16,14:32:30:0.467:2	./.	./.	0/1:41,19:31:60:0.317:2	0/1:1,45:30:46:0.978:2	0/1:24,14:31:38:0.368:2	0/1:37,34:31:71:0.479:2	0/1:0,78:32:78:1.00:2	0/1:22,38:31:60:0.633:2	./.
chr10	69571336	rs3740049	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,55:30:131:0.420:2	./.
chr10	69571365	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,51:30:92:0.560:2	./.
chr10	69748482	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:35:46:0.087:2	./.	./.	./.	./.	./.
chr10	69773841	rs866255	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:47,22:32:69:0.319:2	0/1:42,25:32:68:0.373:2	./.	./.	0/1:35,23:30:58:0.397:2	./.	0/1:41,24:32:65:0.369:2	./.	0/1:51,39:31:90:0.433:2	0/1:53,36:31:89:0.404:2	0/1:58,51:31:110:0.468:2
chr10	69792613	rs138028356	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,19:31:48:0.396:2	./.	./.	./.	./.	./.	./.
chr10	69881254	rs140148105	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,17:32:35:0.486:2	./.	./.	./.	./.	./.	./.
chr10	69905300	rs2817760	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,15:31:37:0.405:2	./.	./.	./.
chr10	69909802	rs10997948	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,29:32:29:1.00:2	0/1:2,18:32:20:0.900:2	0/1:0,7:31:7:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	69926097	rs2673794	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,23:31:55:0.418:2	0/1:0,72:31:73:1.00:2	0/1:44,39:32:83:0.470:2	0/1:51,39:30:90:0.433:2	0/1:1,94:31:95:0.989:2	0/1:0,50:32:50:1.00:2	./.	0/1:0,51:31:51:1.00:2
chr10	69926319	rs61854624	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,25:31:46:0.543:2	0/1:25,17:30:42:0.405:2	./.	./.	0/1:41,33:31:74:0.446:2	./.	./.	./.
chr10	69926325	rs2673793	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,23:32:41:0.561:2	0/1:17,17:31:34:0.500:2	./.	./.	0/1:37,29:32:66:0.439:2	./.	./.	./.
chr10	69926334	rs10823148	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,15:33:35:0.429:2	0/1:41,21:33:62:0.339:2	0/1:21,22:33:43:0.512:2	0/1:26,33:32:59:0.559:2	0/1:2,35:34:37:0.946:2	./.	0/1:0,36:32:36:1.00:2
chr10	69933921	rs10997975	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,45:31:133:0.338:2	0/1:88,74:31:162:0.457:2	0/1:90,51:32:141:0.362:2	0/1:88,66:31:154:0.429:2	0/1:1,156:32:157:0.994:2	./.	0/1:2,183:32:185:0.989:2
chr10	69933969	rs7916821	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,32:30:100:0.320:2	0/1:66,63:30:129:0.488:2	0/1:89,32:31:121:0.264:2	0/1:80,54:30:134:0.403:2	0/1:1,117:32:118:0.992:2	./.	0/1:3,125:32:128:0.977:2
chr10	69934258	rs3814182	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,34:32:73:0.466:2	./.	0/1:30,27:31:57:0.474:2	0/1:53,18:32:71:0.254:2	0/1:0,104:31:104:1.00:2	0/1:29,35:32:64:0.547:2	./.	0/1:0,53:31:53:1.00:2
chr10	69934259	rs62620248	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,28:34:67:0.418:2	./.	./.
chr10	69948844	rs10733838	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,43:33:43:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,52:34:52:1.00:2	0/1:1,41:33:42:0.976:2	0/1:0,58:33:58:1.00:2
chr10	69959204	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:32:117:0.034:2	./.
chr10	69959242	rs7079481	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,76:30:116:0.655:2	0/1:66,52:30:119:0.441:2	0/1:71,42:30:113:0.372:2	0/1:71,56:30:127:0.441:2	0/1:0,133:31:133:1.00:2	./.	0/1:1,127:31:128:0.992:2
chr10	69970172	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:143,4:31:147:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr10	69991749	rs61854782	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,23:30:55:0.418:2	0/1:29,14:31:43:0.326:2	0/1:31,24:31:55:0.436:2	./.	0/1:27,32:31:59:0.542:2	./.	0/1:33,29:31:62:0.468:2	./.
chr10	69991853	rs7916697	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,7:33:21:0.333:2	0/1:4,8:32:12:0.667:2	0/1:9,5:31:14:0.357:2	0/1:0,8:33:8:1.00:2	0/1:4,9:32:13:0.692:2	0/1:0,13:33:13:1.00:2	0/1:7,5:33:12:0.417:2	0/1:0,23:32:23:1.00:2
chr10	70044031	rs4142048	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,40:28:73:0.548:2	0/1:35,27:26:62:0.435:2	0/1:30,45:29:75:0.600:2	./.	./.	./.	0/1:35,17:29:52:0.327:2	./.
chr10	70045157	rs35708572	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,4:31:22:0.182:2	0/1:16,6:33:22:0.273:2	./.	./.
chr10	70051810	rs3835100	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:30:33:1.00:2	0/1:1,11:32:12:0.917:2	0/1:0,9:32:9:1.00:2	0/1:12,17:31:29:0.586:2	0/1:11,9:29:20:0.450:2	0/1:0,12:32:12:1.00:2	0/1:0,8:31:8:1.00:2	0/1:2,20:32:22:0.909:2	0/1:0,32:33:32:1.00:2	0/1:6,10:32:16:0.625:2	0/1:1,40:33:41:0.976:2
chr10	70051928	rs10823171	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,8:28:22:0.364:2	0/1:14,4:27:18:0.222:2	0/1:0,15:30:15:1.00:2	0/1:0,23:28:23:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,32:30:32:1.00:2	0/1:9,11:30:20:0.550:2	0/1:0,20:29:20:1.00:2
chr10	70066553	rs12359690	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,109:32:110:0.991:2	0/1:2,48:32:50:0.960:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	70101417	rs16925347	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,24:32:39:0.615:2	./.	./.	./.	./.	./.
chr10	70101558	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:196,4:32:200:0.020:2	./.	./.	./.	./.	./.
chr10	70105560	rs1162753	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,13:31:13:1.00:2	0/1:74,72:32:146:0.493:2	0/1:58,37:31:95:0.389:2	0/1:0,105:31:105:1.00:2	0/1:0,132:32:132:1.00:2	0/1:0,152:31:152:1.00:2	0/1:1,182:32:183:0.995:2	0/1:1,101:32:102:0.990:2	0/1:0,136:32:136:1.00:2
chr10	70166913	rs59831114	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:26:4:1.00:2	./.	./.	./.
chr10	70191631	rs61855090	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,29:31:62:0.468:2	./.	./.	./.	./.	./.	./.	./.
chr10	70225504	rs3758626	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,10:33:24:0.417:2	./.	./.	0/1:22,24:32:46:0.522:2	0/1:1,15:31:16:0.938:2	./.	./.	0/1:9,8:32:17:0.471:2	./.	./.	./.
chr10	70227964	rs10998205	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,19:31:38:0.500:2	0/1:7,10:30:17:0.588:2	./.	./.	./.	./.	./.	./.
chr10	70231701	rs1535539	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,5:31:11:0.455:2	0/1:13,5:32:18:0.278:2	./.	0/1:11,14:31:25:0.560:2	0/1:3,5:31:8:0.625:2	./.	./.	./.	./.	./.	./.
chr10	70332580	rs10823229	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:31:5:1.00:2	0/1:24,14:32:38:0.368:2	./.	0/1:36,15:30:51:0.294:2	0/1:1,26:34:27:0.963:2	./.	0/1:0,65:32:65:1.00:2	0/1:15,14:31:30:0.483:2	./.
chr10	70332618	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,4:32:25:0.160:2	./.	./.	./.	./.
chr10	70332672	rs12773594	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,21:31:35:0.600:2	0/1:8,8:32:16:0.500:2	./.	0/1:19,15:31:34:0.441:2	0/1:16,16:32:32:0.500:2	./.	./.	./.	./.	./.	./.
chr10	70332862	rs12221107	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,5:26:14:0.357:2	./.	./.	./.	./.	./.	./.
chr10	70405237	rs12241767	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,13:31:18:0.722:2	./.	./.	./.	./.	./.	./.
chr10	70405539	rs16925541	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,19:31:53:0.365:2	./.	./.	./.	./.	./.	./.
chr10	70405855	rs3998860	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:33:43:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,6:33:6:1.00:2	0/1:1,67:32:68:0.985:2	0/1:36,41:32:77:0.532:2	0/1:0,89:33:89:1.00:2	0/1:1,67:33:68:0.985:2	0/1:1,81:33:82:0.988:2	0/1:0,61:33:61:1.00:2	0/1:31,15:33:47:0.326:2	0/1:0,72:32:72:1.00:2
chr10	70446274	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,5:21:43:0.116:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	70446407	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,34:33:83:0.410:2	./.	./.
chr10	70450568	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,3:32:46:0.065:2	./.
chr10	70496773	rs79020072	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:98,15:19:113:0.133:2	./.	./.	0/1:98,18:17:116:0.155:2	0/1:79,16:16:95:0.168:2	0/1:96,24:15:120:0.200:2	0/1:110,23:15:133:0.173:2	0/1:114,28:14:142:0.197:2	0/1:131,13:16:144:0.090:2	0/1:77,19:18:96:0.198:2	0/1:104,23:17:127:0.181:2
chr10	70502288	rs1300253	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,96:32:187:0.513:2	0/1:77,53:32:130:0.408:2	0/1:0,32:31:32:1.00:2	0/1:1,184:32:187:0.995:2	0/1:110,85:31:195:0.436:2	0/1:1,190:31:191:0.995:2	0/1:4,167:32:171:0.977:2	0/1:0,187:32:187:1.00:2	0/1:0,192:32:192:1.00:2	0/1:115,75:31:191:0.395:2	0/1:0,184:32:184:1.00:2
chr10	70515251	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:33:191:0.021:2	./.	./.	./.	./.	./.
chr10	70641860	rs1341667	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:33:4:1.00:2	0/1:1,38:33:39:0.974:2	0/1:42,26:31:68:0.382:2	0/1:26,27:32:53:0.509:2	0/1:0,34:32:34:1.00:2	0/1:31,30:32:61:0.492:2	0/1:1,62:33:63:0.984:2	0/1:23,20:31:43:0.465:2	0/1:38,29:30:67:0.433:2
chr10	70644077	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:31:129:0.031:2	./.
chr10	70645063	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:34:99:0.040:2	./.	./.
chr10	70645376	rs10509305	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:42,36:29:78:0.462:2	0/1:23,31:28:54:0.574:2	./.	./.	0/1:47,32:28:79:0.405:2	./.	./.	0/1:42,38:29:80:0.475:2	./.	./.	./.
chr10	70645697	rs10509306	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,51:31:115:0.443:2	./.	./.	./.	./.	./.	./.
chr10	70666668	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,4:33:85:0.047:2	./.	./.	./.	./.	./.	./.	./.
chr10	70696713	rs5030895	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:32:53:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,80:32:80:1.00:2
chr10	70696818	rs61743874	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:31:2:1.00:2	0/1:22,21:31:43:0.488:2	./.	./.	./.	./.	./.	./.	./.
chr10	70700944	rs5030900	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:32:9:1.00:2	0/1:1,70:32:71:0.986:2	0/1:29,20:31:49:0.408:2	0/1:40,47:32:87:0.540:2	0/1:0,57:33:57:1.00:2	0/1:31,37:32:68:0.544:2	0/1:0,75:33:75:1.00:2	0/1:1,68:32:69:0.986:2	0/1:45,55:32:100:0.550:2
chr10	70706108	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:31:69:0.058:2	./.	./.	./.	./.	./.
chr10	70726887	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:128:0.031:2	./.	./.	./.	./.
chr10	70748784	rs2255607	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:29:12:0.500:2	./.	0/1:4,3:34:7:0.429:2	0/1:0,8:32:8:1.00:2	0/1:9,7:32:16:0.438:2	0/1:0,10:33:10:1.00:2	0/1:0,6:32:6:1.00:2	./.
chr10	70760200	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	70760271	rs62625033	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,18:30:38:0.474:2	./.
chr10	70775959	rs35893997	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,77:32:82:0.939:2	./.	./.	./.	./.
chr10	70776067	rs41279644	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,34:30:59:0.576:2	./.	./.	./.	./.	./.
chr10	70856852	rs2229498	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,39:33:82:0.476:2	0/1:20,24:33:44:0.545:2	0/1:4,6:32:11:0.600:2	0/1:50,48:32:98:0.490:2	0/1:0,70:32:71:1.00:2	0/1:1,95:32:96:0.990:2	0/1:0,75:32:75:1.00:2	0/1:0,115:33:115:1.00:2	0/1:0,104:34:104:1.00:2	0/1:2,72:33:74:0.973:2	0/1:0,102:32:102:1.00:2
chr10	70856875	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,4:33:87:0.046:2	./.	./.	./.	./.	./.	./.
chr10	70884013	rs5030909	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:29:15:0.533:2	./.	0/1:13,22:27:35:0.629:2	./.	./.	0/1:29,33:27:62:0.532:2	0/1:13,14:29:27:0.519:2	0/1:20,21:28:41:0.512:2	0/1:10,8:27:18:0.444:2
chr10	70892791	rs5030932	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,7:32:8:0.875:2	./.	0/1:23,6:32:29:0.207:2	./.	./.	0/1:26,26:33:52:0.500:2	0/1:28,19:34:47:0.404:2	0/1:29,12:32:41:0.293:2	0/1:25,32:33:57:0.561:2
chr10	70967698	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,4:31:71:0.056:2	./.	./.	./.	./.	./.	./.
chr10	70968505	rs28932172	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,43:31:66:0.652:2	./.	./.	./.	./.	./.
chr10	70987060	rs10823320	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,55:32:116:0.474:2	./.	./.	./.	./.	./.	./.
chr10	70992664	rs874556	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,5:29:6:0.833:2	0/1:3,13:29:16:0.813:2	0/1:0,10:30:10:1.00:2	0/1:11,9:29:20:0.450:2	./.	0/1:8,5:30:13:0.385:2	0/1:5,7:29:12:0.583:2	./.	0/1:0,19:30:19:1.00:2
chr10	71000434	rs184445568	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,55:31:143:0.385:2	./.	./.	./.
chr10	71005939	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,66:31:139:0.475:2	./.	./.	./.	./.	./.
chr10	71010375	rs5030948	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,34:31:62:0.548:2	0/1:0,47:32:47:1.00:2	./.	0/1:17,19:32:36:0.528:2
chr10	71018660	rs1111335	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:28:55:1.00:2	0/1:0,42:28:42:1.00:2	0/1:0,10:29:10:1.00:2	0/1:1,72:28:73:0.986:2	./.	0/1:0,96:28:96:1.00:2	0/1:0,104:29:104:1.00:2	0/1:0,100:29:100:1.00:2	0/1:0,84:29:84:1.00:2	0/1:0,76:28:76:1.00:2	0/1:0,69:27:69:1.00:2
chr10	71026510	rs906219	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:28:4:1.00:2	0/1:1,46:31:47:0.979:2	./.	./.	0/1:0,41:32:41:1.00:2	./.	./.	0/1:27,11:31:38:0.289:2	./.
chr10	71055459	rs4746837	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,35:33:38:0.921:2	0/1:0,30:33:30:1.00:2	0/1:0,4:33:4:1.00:2	0/1:11,20:33:31:0.645:2	0/1:2,31:31:33:0.939:2	0/1:2,34:33:36:0.944:2	0/1:0,22:33:22:1.00:2	0/1:2,27:32:29:0.931:2	0/1:0,35:33:35:1.00:2	./.	./.
chr10	71060610	rs906220	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:30:75:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,62:29:62:1.00:2	0/1:0,42:30:42:1.00:2	0/1:2,48:29:50:0.960:2	0/1:0,60:31:60:1.00:2	0/1:72,26:31:98:0.265:2	0/1:53,39:29:92:0.424:2
chr10	71060634	rs906221	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,33:32:33:1.00:2	0/1:2,38:31:40:0.950:2	0/1:0,46:33:46:1.00:2	0/1:58,18:31:76:0.237:2	0/1:39,28:32:67:0.418:2
chr10	71103597	rs1133189	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,44:32:44:1.00:2	0/1:0,27:32:27:1.00:2	./.	0/1:32,33:32:65:0.508:2	./.	./.	0/1:43,27:31:70:0.386:2	./.	./.	./.	0/1:26,28:33:54:0.519:2
chr10	71142420	rs748235	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:32:42:1.00:2	0/1:0,31:32:31:1.00:2	0/1:3,4:31:7:0.571:2	0/1:28,34:32:62:0.548:2	0/1:0,71:31:71:1.00:2	0/1:1,83:31:84:0.988:2	0/1:44,24:31:68:0.353:2	0/1:44,27:32:71:0.380:2	0/1:0,47:32:47:1.00:2	0/1:25,24:31:49:0.490:2	0/1:21,25:33:46:0.543:2
chr10	71144167	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:35:120:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	71152041	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:32:151:0.026:2	./.
chr10	71164655	rs2229170	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,36:29:71:0.507:2	0/1:2,57:30:59:0.966:2	0/1:45,39:30:84:0.464:2	./.	./.	./.	./.	./.
chr10	71168685	rs55953810	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:33:19:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,6:33:6:1.00:2
chr10	71175736	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:90,5:33:95:0.053:2	./.	./.	./.	./.	./.	./.
chr10	71176012	rs5030920	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:32:16:0.375:2	./.	./.	./.	./.	0/1:83,73:32:156:0.468:2	0/1:62,39:32:101:0.386:2	0/1:32,39:32:71:0.549:2	./.
chr10	71243537	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,6:31:185:0.032:2	./.	./.
chr10	71243629	rs62625031	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,48:32:111:0.432:2
chr10	71258055	rs75591379	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,8:20:79:0.101:2
chr10	71332204	rs4536103	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	0/1:0,5:31:5:1.00:2
chr10	71332301	rs41277236	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,5:32:9:0.556:2	./.	./.	./.	./.
chr10	71390392	rs1947741	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,42:31:97:0.433:2	0/1:0,90:30:90:1.00:2	0/1:56,48:31:104:0.462:2	0/1:61,30:31:91:0.330:2	0/1:40,40:31:80:0.500:2	0/1:0,78:31:78:1.00:2	0/1:24,32:31:56:0.571:2
chr10	71390393	rs977096	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:35,33:28:68:0.485:2	0/1:18,14:27:32:0.438:2	./.	./.	./.	./.	0/1:51,56:29:107:0.523:2	0/1:33,61:29:94:0.649:2	./.	./.	0/1:34,24:28:58:0.414:2
chr10	71391538	rs1381932	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:23,39:28:62:0.629:2	0/1:13,14:29:27:0.519:2	./.	./.	./.	./.	0/1:84,48:28:132:0.364:2	0/1:71,52:27:123:0.423:2	./.	./.	0/1:31,41:29:72:0.569:2
chr10	71392557	rs12020	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,12:30:28:0.429:2	0/1:13,14:30:27:0.519:2	./.	./.	0/1:9,3:27:12:0.250:2	0/1:0,15:30:15:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,17:29:17:1.00:2	0/1:9,6:29:15:0.400:2	0/1:2,6:27:8:0.750:2	0/1:0,7:31:7:1.00:2
chr10	71392692	rs1052152	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:81,62:31:143:0.434:2	0/1:44,41:30:85:0.482:2	./.	./.	0/1:128,69:31:197:0.350:2	0/1:1,183:31:184:0.995:2	0/1:2,187:31:189:0.989:2	0/1:3,179:31:182:0.984:2	0/1:103,85:32:188:0.452:2	0/1:1,161:31:162:0.994:2	0/1:0,155:31:155:1.00:2
chr10	71392763	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:32:186:0.022:2
chr10	71562437	rs10998973	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,29:32:49:0.592:2	0/1:27,28:31:55:0.509:2	0/1:0,23:31:23:1.00:2	0/1:69,87:31:156:0.558:2	0/1:101,91:31:192:0.474:2	./.	0/1:79,69:31:148:0.466:2	0/1:101,57:32:158:0.361:2	0/1:0,107:32:107:1.00:2	0/1:59,33:32:92:0.359:2	./.
chr10	71640255	rs2395272	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,32:31:66:0.485:2
chr10	71647223	rs11816811	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,22:33:37:0.595:2	./.
chr10	71657272	rs1227746	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:33:40:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,63:33:63:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,52:34:52:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,65:33:65:1.00:2
chr10	71658512	rs1227747	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:30:73:1.00:2	0/1:1,49:30:50:0.980:2	0/1:0,11:31:11:1.00:2	0/1:0,82:30:82:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,63:29:63:1.00:2	0/1:0,56:30:56:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,94:31:94:1.00:2	0/1:0,67:30:67:1.00:2	0/1:1,68:31:69:0.986:2
chr10	71678058	rs2274181	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:8,7:29:15:0.467:2	0/1:3,6:30:9:0.667:2	./.	./.	0/1:6,3:27:9:0.333:2	./.	./.	0/1:11,10:30:21:0.476:2	./.	./.	./.
chr10	71685557	rs80290126	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,20:32:60:0.333:2	./.
chr10	71690231	rs58566350	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,20:32:46:0.435:2	./.
chr10	71695147	rs114352207	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,10:33:26:0.385:2	./.
chr10	71712674	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:34:174:0.023:2
chr10	71712697	rs144348670	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,6:25:191:0.031:2
chr10	71851653	rs116804623	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,43:31:70:0.614:2	./.	./.	./.
chr10	71860014	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,3:30:24:0.125:2	./.
chr10	71874048	rs1053495	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,16:31:29:0.552:2	0/1:7,4:32:11:0.364:2	./.	./.	./.	0/1:13,14:31:27:0.519:2	./.	./.	0/1:18,18:33:36:0.500:2	./.	./.
chr10	71874683	rs2271696	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,13:30:33:0.394:2	./.	./.	./.	./.	./.	./.	./.
chr10	71874734	rs2271695	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,26:31:56:0.464:2	./.	./.	./.	./.	./.	./.	./.
chr10	71874866	rs61736904	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,37:33:98:0.378:2	./.	./.	./.	./.	./.	./.	./.
chr10	71876382	rs2394656	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,16:31:49:0.327:2	0/1:19,10:31:29:0.345:2	0/1:0,4:31:4:1.00:2	0/1:26,27:30:53:0.509:2	0/1:0,61:30:61:1.00:2	0/1:49,45:31:94:0.479:2	0/1:0,70:31:70:1.00:2	0/1:3,74:31:77:0.961:2	0/1:34,36:32:70:0.514:2	0/1:0,41:31:41:1.00:2	0/1:1,63:31:64:0.984:2
chr10	71880858	rs10999147	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,12:29:36:0.333:2	0/1:25,17:29:42:0.405:2	./.	./.	./.	./.	./.
chr10	71883746	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:32:117:0.034:2	./.	./.	./.	./.
chr10	71905569	rs3750774	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	0/1:0,3:30:3:1.00:2	./.	0/1:0,2:32:2:1.00:2	0/1:2,4:31:6:0.667:2	0/1:0,3:27:3:1.00:2	0/1:1,4:30:5:0.800:2	./.
chr10	71905695	rs10999158	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:26:4:1.00:2	0/1:0,2:28:2:1.00:2	./.	./.	0/1:10,5:31:15:0.333:2	0/1:8,6:27:14:0.429:2	0/1:8,7:31:15:0.467:2	./.	0/1:8,6:31:14:0.429:2	0/1:3,4:30:7:0.571:2	0/1:0,4:24:4:1.00:2
chr10	71905947	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:33:4:0.750:2	./.	./.	./.	./.	./.	./.	./.
chr10	71906150	rs4746970	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:31:4:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.
chr10	71921400	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:31:137:0.029:2	./.	./.	./.	./.
chr10	71921451	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:32:101:0.040:2	./.	./.	./.	./.
chr10	71921591	rs2271690	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,44:31:87:0.506:2	0/1:27,14:31:41:0.341:2	0/1:5,3:29:8:0.375:2	0/1:2,68:30:70:0.971:2	0/1:28,24:31:52:0.462:2	0/1:39,34:30:73:0.466:2	0/1:45,30:31:75:0.400:2	0/1:47,41:30:88:0.466:2	0/1:67,42:31:109:0.385:2	0/1:51,43:31:94:0.457:2	./.
chr10	71977594	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,4:31:66:0.061:2	./.	./.	./.	./.	./.	./.	./.
chr10	71977639	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,4:32:81:0.049:2	./.	./.	./.	./.	./.	./.	./.
chr10	71993094	rs7077538	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:33:4:0.750:2	./.	./.	./.	./.
chr10	72015409	rs10999212	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,70:31:135:0.519:2	./.	0/1:54,60:31:114:0.526:2	0/1:41,40:31:81:0.494:2	0/1:22,39:32:61:0.639:2
chr10	72015573	rs3812694	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,56:32:109:0.514:2	./.	./.	./.
chr10	72025954	rs3812696	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,82:32:182:0.451:2	./.	./.	./.	./.	./.	./.
chr10	72164252	.	A	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,3:31:37:0.081:2	0/1:40,5:29:45:0.111:2	0/1:43,4:31:47:0.085:2	0/1:25,4:31:29:0.138:2	./.	./.	./.	./.
chr10	72164273	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,5:25:41:0.122:2	./.	0/1:23,4:30:27:0.148:2	./.	./.	./.	./.
chr10	72164298	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,4:30:29:0.138:2	./.	0/1:18,4:33:22:0.182:2	./.	./.	./.	./.
chr10	72179746	rs1043098	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:32:6:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,27:31:27:1.00:2	0/1:21,16:31:37:0.432:2	./.	0/1:29,20:32:49:0.408:2	./.	0/1:41,21:32:62:0.339:2	./.
chr10	72181460	rs3793809	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,48:32:106:0.453:2	0/1:42,60:32:102:0.588:2	0/1:0,16:30:16:1.00:2	0/1:0,187:32:187:1.00:2	0/1:0,161:32:161:1.00:2	0/1:0,177:31:177:1.00:2	0/1:100,92:32:192:0.479:2	0/1:110,84:32:194:0.433:2	0/1:4,180:33:184:0.978:2	0/1:92,66:32:158:0.418:2	0/1:0,186:32:186:1.00:2
chr10	72195439	rs1904589	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:31:7:1.00:2	0/1:1,75:30:76:0.987:2	0/1:0,61:31:61:1.00:2	0/1:26,31:30:57:0.544:2	./.	0/1:42,49:28:91:0.538:2	0/1:23,35:30:58:0.603:2	0/1:19,20:30:39:0.513:2	0/1:40,27:29:68:0.403:2
chr10	72289701	rs2275059	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:18,22:30:40:0.550:2	0/1:11,14:32:25:0.560:2	./.	0/1:27,25:31:52:0.481:2	./.	./.	./.	./.	./.	./.	./.
chr10	72289778	rs2275060	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	0/1:23,23:30:46:0.500:2	0/1:20,16:28:36:0.444:2	0/1:19,13:31:32:0.406:2	./.	./.	./.	0/1:21,15:30:36:0.417:2
chr10	72291172	rs61737673	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,27:30:57:0.474:2	./.	./.	./.	./.	./.	./.	./.
chr10	72293713	rs12764399	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,43:30:98:0.439:2	0/1:25,27:32:52:0.519:2	./.	./.	./.	./.	./.	./.	0/1:50,67:32:117:0.573:2	./.	./.
chr10	72294183	rs146549491	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,27:31:60:0.450:2	./.	./.
chr10	72307101	rs3740447	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:42,26:33:68:0.382:2	0/1:12,22:32:34:0.647:2	./.	0/1:41,36:32:77:0.468:2	./.	./.	./.	./.	./.	./.	./.
chr10	72324143	rs7093516	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:33:96:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,14:32:14:1.00:2	0/1:1,103:32:104:0.990:2	0/1:1,156:32:157:0.994:2	0/1:0,145:33:145:1.00:2	0/1:0,148:33:148:1.00:2	0/1:0,186:32:186:1.00:2	0/1:0,152:33:153:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,113:33:113:1.00:2
chr10	72326400	rs10999406	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,21:31:44:0.477:2	./.	./.	./.	./.	0/1:0,26:33:26:1.00:2	./.
chr10	72358577	rs885822	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,182:31:182:1.00:2	0/1:1,126:31:127:0.992:2	0/1:0,26:30:26:1.00:2	0/1:100,87:31:187:0.465:2	0/1:0,182:31:182:1.00:2	0/1:0,181:31:181:1.00:2	0/1:104,86:31:190:0.453:2	0/1:1,181:31:182:0.995:2	0/1:89,95:32:184:0.516:2	0/1:1,185:31:186:0.995:2	0/1:1,174:31:175:0.994:2
chr10	72358655	rs885821	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,93:33:182:0.511:2	0/1:114,78:32:192:0.406:2	./.	./.	./.	./.	./.	0/1:0,159:33:159:1.00:2
chr10	72358722	rs28933375	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,12:33:23:0.522:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	72360197	rs116554195	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:27:14:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	72360224	rs115281140	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:30:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	72462188	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:136,4:31:140:0.029:2	./.	./.	./.	./.	./.	./.
chr10	72468473	rs61749230	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,37:32:89:0.416:2	./.	./.
chr10	72489959	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:30:94:0.043:2	./.	./.	./.	./.
chr10	72500763	rs10823607	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,110:31:112:0.982:2	0/1:1,50:30:51:0.980:2	0/1:12,8:28:20:0.400:2	0/1:0,151:30:151:1.00:2	0/1:1,183:30:184:0.995:2	0/1:120,74:30:194:0.381:2	0/1:1,185:30:186:0.995:2	0/1:112,75:30:187:0.401:2	0/1:82,93:31:175:0.531:2	0/1:0,122:30:122:1.00:2	0/1:0,130:29:130:1.00:2
chr10	72500863	rs10999500	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,51:30:113:0.451:2	0/1:30,15:29:45:0.333:2	0/1:6,9:29:15:0.600:2	0/1:1,114:30:115:0.991:2	./.	./.	0/1:2,151:30:153:0.987:2	0/1:87,74:30:161:0.460:2	0/1:68,54:31:122:0.443:2	0/1:0,91:30:91:1.00:2	0/1:1,87:30:88:0.989:2
chr10	72503344	rs10999502	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,60:32:142:0.423:2	./.	./.	./.	0/1:96,97:32:193:0.503:2	./.	./.	./.
chr10	72503351	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,6:34:49:0.122:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	72513635	rs12774070	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,8:28:23:0.348:2	0/1:8,8:29:16:0.500:2	./.	./.	0/1:0,41:31:42:1.00:2	0/1:18,22:31:40:0.550:2	./.	./.	0/1:21,10:31:31:0.323:2	./.	./.
chr10	72513682	rs2587475	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:33:9:1.00:2	0/1:0,8:32:8:1.00:2	./.	./.	0/1:0,19:31:19:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,10:30:10:1.00:2	./.	0/1:11,5:32:16:0.313:2	0/1:0,11:30:11:1.00:2	0/1:8,4:31:12:0.333:2
chr10	72517830	rs10999516	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,22:29:70:0.314:2	./.	./.	./.	0/1:37,27:29:65:0.422:2	0/1:25,37:30:62:0.597:2	./.	./.
chr10	72517837	rs6480463	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,21:32:40:0.525:2	0/1:7,15:32:22:0.682:2	0/1:2,11:32:13:0.846:2	0/1:25,44:32:69:0.638:2	0/1:36,28:33:64:0.438:2	./.	0/1:0,59:33:59:1.00:2	0/1:33,36:32:69:0.522:2	0/1:37,23:33:60:0.383:2	0/1:14,25:31:39:0.641:2	0/1:0,37:33:37:1.00:2
chr10	72518009	rs4747096	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,32:31:75:0.427:2	./.	./.	./.	0/1:54,38:32:92:0.413:2	0/1:33,31:33:64:0.484:2	./.	./.
chr10	72520254	rs61736607	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:7,5:31:12:0.417:2	0/1:13,9:32:22:0.409:2	./.	./.	./.	./.	./.	./.	./.	0/1:13,11:31:24:0.458:2	./.
chr10	72520259	rs61573157	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,5:26:12:0.417:2	0/1:8,12:31:20:0.600:2	./.	./.	0/1:17,7:32:24:0.292:2	0/1:15,7:30:22:0.318:2	./.	./.	./.	./.	./.
chr10	72520330	rs10823615	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,13:30:27:0.481:2	0/1:16,10:29:26:0.385:2	./.	0/1:16,24:29:40:0.600:2	0/1:11,19:27:30:0.633:2	0/1:25,10:29:37:0.286:2	./.
chr10	72520567	rs10823616	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,13:32:34:0.382:2	./.	./.	0/1:30,17:33:47:0.362:2	0/1:12,15:33:27:0.556:2	./.	./.
chr10	72532037	rs2253793	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:56,40:33:96:0.417:2	0/1:22,27:33:49:0.551:2	0/1:5,11:32:16:0.688:2	./.	./.	./.	0/1:0,53:32:53:1.00:2	./.	0/1:84,72:34:156:0.462:2	0/1:48,33:33:81:0.407:2	0/1:65,64:33:129:0.496:2
chr10	72535007	rs2254174	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,42:31:42:1.00:2	0/1:0,25:32:25:1.00:2	./.	0/1:0,71:32:71:1.00:2	0/1:1,55:32:56:0.982:2	0/1:31,43:32:74:0.581:2	0/1:0,102:33:102:1.00:2	0/1:0,73:32:73:1.00:2	0/1:35,20:34:55:0.364:2	0/1:26,19:32:45:0.422:2	0/1:0,52:33:52:1.00:2
chr10	72536936	rs2254433	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,14:31:35:0.400:2	0/1:22,12:31:34:0.353:2	./.	./.	0/1:20,20:32:40:0.500:2	0/1:12,18:34:30:0.600:2	./.	./.
chr10	72537086	rs4747099	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,13:30:26:0.500:2	./.	./.
chr10	72538346	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:137,4:32:142:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr10	72539428	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,13:32:42:0.310:2	./.	./.	./.	./.	./.	./.
chr10	72604263	rs12770335	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:25,32:31:57:0.561:2	0/1:20,18:32:38:0.474:2	./.	./.	0/1:15,21:30:36:0.583:2	./.	./.	./.	./.	./.	./.
chr10	72614524	rs11597050	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,21:33:53:0.396:2	./.
chr10	72617401	rs35130985	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,4:32:115:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr10	72619205	rs827255	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:32:60:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,87:31:87:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,104:33:104:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,93:32:93:1.00:2
chr10	72629567	rs827249	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,12:31:25:0.480:2	./.	./.	./.	./.	./.	0/1:108,87:33:196:0.446:2	./.	./.
chr10	72631626	rs865832	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:18,14:30:32:0.438:2	0/1:25,6:32:31:0.194:2	./.	./.	0/1:27,20:31:47:0.426:2	./.	./.	0/1:18,18:32:36:0.500:2	0/1:31,16:33:47:0.340:2	./.	./.
chr10	72633267	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,10:16:119:0.084:2
chr10	73044580	rs12770025	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,22:31:49:0.449:2	0/1:17,12:31:29:0.414:2	0/1:0,12:32:12:1.00:2	0/1:0,78:32:78:1.00:2	0/1:42,28:31:70:0.400:2	0/1:0,65:31:65:1.00:2	0/1:2,44:31:46:0.957:2	0/1:26,32:30:58:0.552:2	0/1:0,56:31:56:1.00:2	0/1:0,39:32:39:1.00:2	0/1:21,17:32:38:0.447:2
chr10	73048746	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:34:186:0.022:2	./.	./.
chr10	73051188	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:33:104:0.038:2	./.	./.
chr10	73051440	rs10509332	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,14:27:27:0.519:2	./.	./.	./.
chr10	73055618	rs17546061	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,74:31:158:0.468:2	./.	./.	./.
chr10	73057755	rs10823720	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,31:33:64:0.484:2	./.	./.	./.
chr10	73082563	rs2277257	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,46:29:47:0.979:2	0/1:0,30:29:30:1.00:2	0/1:1,4:32:5:0.800:2	0/1:3,72:29:75:0.960:2	0/1:41,49:29:90:0.544:2	./.	./.	0/1:47,36:29:83:0.434:2	./.	0/1:33,31:30:64:0.484:2	./.
chr10	73104056	rs2243540	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:32:42:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,37:33:37:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,36:31:36:1.00:2
chr10	73111408	rs780668	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,74:32:75:0.987:2	0/1:0,72:32:72:1.00:2	0/1:0,19:31:19:1.00:2	0/1:77,69:30:146:0.473:2	0/1:0,183:31:183:1.00:2	0/1:1,145:31:146:0.993:2	0/1:5,179:31:184:0.973:2	0/1:1,181:31:182:0.995:2	0/1:82,59:33:141:0.418:2	0/1:0,110:31:110:1.00:2	0/1:97,47:31:144:0.326:2
chr10	73115941	rs2252997	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:32:85:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,28:31:28:1.00:2	0/1:83,54:32:137:0.394:2	0/1:0,172:33:172:1.00:2	0/1:2,104:33:106:0.981:2	0/1:0,157:33:157:1.00:2	0/1:2,163:33:165:0.988:2	0/1:0,145:33:145:1.00:2	0/1:1,83:33:84:0.988:2	0/1:0,90:32:90:1.00:2
chr10	73115942	rs2252996	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:31:85:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,28:29:28:1.00:2	0/1:82,53:31:135:0.393:2	0/1:0,171:31:171:1.00:2	0/1:2,104:30:106:0.981:2	0/1:0,157:31:157:1.00:2	0/1:2,162:31:165:0.988:2	0/1:0,145:32:145:1.00:2	0/1:1,82:31:83:0.988:2	0/1:0,90:31:90:1.00:2
chr10	73121913	rs2487068	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:28:87:1.00:2	0/1:2,53:28:55:0.964:2	0/1:0,19:29:19:1.00:2	0/1:104,73:28:178:0.412:2	0/1:1,149:28:150:0.993:2	0/1:68,70:28:138:0.507:2	0/1:1,164:28:165:0.994:2	0/1:1,162:28:163:0.994:2	./.	0/1:0,109:29:109:1.00:2	0/1:0,90:27:90:1.00:2
chr10	73121945	rs1084004	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,113:32:113:1.00:2	0/1:1,77:32:78:0.987:2	0/1:0,21:33:21:1.00:2	0/1:111,80:32:192:0.419:2	0/1:1,185:32:186:0.995:2	0/1:0,186:33:186:1.00:2	0/1:0,189:32:189:1.00:2	0/1:2,183:32:185:0.989:2	0/1:0,174:34:174:1.00:2	0/1:0,156:33:156:1.00:2	0/1:0,109:32:110:1.00:2
chr10	73199588	rs41281302	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,35:32:73:0.479:2	./.	./.	./.	./.	./.	./.	./.
chr10	73199595	rs7902757	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,36:29:75:0.480:2	./.	./.	./.	./.	./.	./.	./.
chr10	73270906	rs3802720	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:30:85:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,10:30:10:1.00:2	0/1:52,45:29:97:0.464:2	0/1:0,94:29:94:1.00:2	0/1:68,50:29:118:0.424:2	0/1:63,52:29:115:0.452:2	0/1:1,146:29:147:0.993:2	./.	0/1:42,32:30:74:0.432:2	0/1:0,76:29:77:1.00:2
chr10	73270982	rs3802719	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:31:51:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,13:32:13:1.00:2	0/1:43,29:31:72:0.403:2	0/1:1,44:32:45:0.978:2	0/1:44,16:31:60:0.267:2	0/1:55,38:32:93:0.409:2	0/1:0,72:32:72:1.00:2	./.	0/1:34,21:31:55:0.382:2	0/1:0,47:33:47:1.00:2
chr10	73406504	rs2305209	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,5:32:14:0.357:2	./.	./.	0/1:57,51:32:108:0.472:2	./.	0/1:2,108:32:110:0.982:2	0/1:54,55:33:109:0.505:2	./.	./.
chr10	73434888	rs1227049	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:31:11:0.545:2	./.	./.	./.	0/1:44,28:32:72:0.389:2	./.	0/1:30,35:33:65:0.538:2	./.	./.
chr10	73434906	rs10999947	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:32:12:0.417:2	./.	0/1:31,49:31:80:0.613:2	0/1:37,35:31:72:0.486:2	./.	0/1:51,32:31:83:0.386:2	./.	./.	0/1:32,26:31:58:0.448:2
chr10	73455201	rs3752752	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:29:61:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,93:29:93:1.00:2	0/1:53,56:29:109:0.514:2	0/1:49,41:29:90:0.456:2	0/1:49,51:29:100:0.510:2	0/1:6,113:29:119:0.950:2	0/1:0,87:29:87:1.00:2	./.	0/1:28,30:27:58:0.517:2
chr10	73455273	rs3752751	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:28:46:1.00:2	0/1:0,21:28:21:1.00:2	0/1:0,3:29:3:1.00:2	0/1:0,58:29:58:1.00:2	0/1:43,37:28:80:0.463:2	0/1:23,36:29:59:0.610:2	0/1:31,44:29:75:0.587:2	0/1:3,87:28:90:0.967:2	0/1:0,57:29:57:1.00:2	./.	0/1:29,20:27:49:0.408:2
chr10	73464812	rs111033458	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,10:31:28:0.357:2	./.
chr10	73466709	rs10823829	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,61:30:119:0.513:2	./.	./.	./.	./.
chr10	73472868	rs2394838	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,6:31:33:0.182:2	./.	0/1:31,23:32:54:0.426:2	0/1:24,19:32:43:0.442:2	0/1:27,23:32:50:0.460:2	./.	./.
chr10	73472882	rs2166631	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,7:31:29:0.241:2	./.	0/1:26,13:30:39:0.333:2	0/1:24,20:30:44:0.455:2	0/1:26,21:32:47:0.447:2	./.	./.
chr10	73491829	rs56107171	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,63:33:189:0.333:2	./.	./.	./.
chr10	73492073	rs41281318	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,78:32:153:0.510:2	./.	./.	./.
chr10	73492079	rs1227065	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:30:55:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,82:30:82:1.00:2	0/1:65,49:30:114:0.430:2	0/1:49,59:30:108:0.546:2	0/1:46,64:30:110:0.582:2	0/1:1,141:30:142:0.993:2	0/1:0,85:31:85:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,88:30:88:1.00:2
chr10	73494395	rs77770890	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,70:30:173:0.405:2	./.	./.	./.	./.	./.	./.	0/1:61,72:29:133:0.541:2
chr10	73498355	rs56181447	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,39:32:104:0.375:2	./.	./.	./.	./.
chr10	73500654	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.	./.	./.	./.
chr10	73501556	rs1227051	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:30:70:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,109:30:110:1.00:2	0/1:71,74:29:146:0.510:2	0/1:58,51:29:111:0.468:2	0/1:75,70:30:145:0.483:2	0/1:0,112:30:112:1.00:2	0/1:1,102:30:103:0.990:2	0/1:0,72:29:72:1.00:2	0/1:0,91:30:91:1.00:2
chr10	73520632	rs3747869	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:33:75:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,138:33:138:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,79:34:79:1.00:2	0/1:56,50:33:106:0.472:2	0/1:1,92:33:93:0.989:2
chr10	73521371	rs3747867	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,41:30:43:0.976:2	0/1:1,25:32:26:0.962:2	0/1:3,10:31:13:0.769:2	./.	0/1:65,62:30:129:0.488:2	0/1:49,39:30:88:0.443:2	0/1:52,46:31:98:0.469:2	./.	0/1:38,24:31:62:0.387:2	./.	./.
chr10	73521578	rs3747866	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,11:28:18:0.611:2	./.	0/1:65,96:30:161:0.596:2	./.	./.	./.	./.	./.	./.
chr10	73533177	rs3747862	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,25:31:25:1.00:2	./.	./.	./.	0/1:12,7:31:19:0.368:2	./.	0/1:30,8:30:38:0.211:2	0/1:11,8:33:19:0.421:2
chr10	73537614	rs17712523	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:99,92:31:191:0.482:2	./.	./.	0/1:105,74:32:179:0.413:2	./.	./.	./.
chr10	73537978	rs10762480	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:1,86:31:87:0.989:2	0/1:0,34:32:34:1.00:2	0/1:9,8:31:17:0.471:2	./.	./.	0/1:51,61:31:112:0.545:2	0/1:95,72:31:167:0.431:2	./.	0/1:40,52:31:92:0.565:2	./.	./.
chr10	73537992	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,6:32:127:0.047:2	./.	./.	./.
chr10	73539073	rs111033270	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:32:136:0.029:2
chr10	73544086	rs3802711	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:2,76:33:78:0.974:2	0/1:0,27:32:27:1.00:2	0/1:4,14:32:18:0.778:2	./.	./.	./.	0/1:48,30:31:78:0.385:2	./.	0/1:50,53:33:103:0.515:2	./.	./.
chr10	73550117	rs11592462	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,43:32:43:1.00:2	0/1:42,20:33:62:0.323:2	./.	./.	0/1:41,22:33:63:0.349:2	./.	0/1:22,15:33:37:0.405:2	0/1:19,18:32:37:0.486:2
chr10	73550969	rs10466026	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,55:30:55:1.00:2	0/1:0,35:31:35:1.00:2	0/1:8,6:30:14:0.429:2	./.	./.	0/1:0,94:30:94:1.00:2	0/1:84,55:30:139:0.396:2	0/1:65,56:29:121:0.463:2	0/1:33,17:30:50:0.340:2	./.	./.
chr10	73558128	rs41281334	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,59:32:117:0.504:2	./.	./.	./.
chr10	73558886	rs4747194	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,46:32:48:0.958:2	0/1:0,25:32:25:1.00:2	./.	./.	./.	0/1:0,51:32:51:1.00:2	0/1:33,28:33:61:0.459:2	0/1:42,25:31:67:0.373:2	0/1:31,33:32:64:0.516:2	./.	./.
chr10	73558952	rs4747195	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:1,60:32:61:0.984:2	0/1:0,34:32:34:1.00:2	0/1:2,3:33:5:0.600:2	./.	./.	0/1:0,66:32:66:1.00:2	0/1:43,32:31:75:0.427:2	0/1:48,34:33:82:0.415:2	0/1:49,37:34:86:0.430:2	./.	./.
chr10	73560498	rs41281336	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,23:32:50:0.460:2
chr10	73562744	rs10823849	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,62:32:62:1.00:2	0/1:0,29:32:29:1.00:2	0/1:10,3:32:13:0.231:2	./.	./.	0/1:1,103:31:104:0.990:2	0/1:63,62:32:125:0.496:2	0/1:90,47:33:137:0.343:2	0/1:55,57:33:112:0.509:2	./.	./.
chr10	73565712	rs201733315	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,37:28:61:0.607:2	./.	./.	./.	./.	./.
chr10	73569749	rs11000009	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	./.	./.	0/1:24,23:31:47:0.489:2	./.	0/1:18,21:33:39:0.538:2	./.	0/1:23,23:31:46:0.500:2
chr10	73571521	rs11000013	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,13:30:20:0.650:2	./.	0/1:15,12:31:27:0.444:2	./.	0/1:12,9:31:21:0.429:2
chr10	73571765	rs45583140	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,69:33:146:0.473:2	./.	./.	./.	./.	./.
chr10	73574843	rs2290021	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,25:31:36:0.694:2	./.	0/1:13,19:31:32:0.594:2	./.	./.	./.
chr10	73574898	rs200124827	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:33:4:0.750:2	./.
chr10	73591639	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,4:32:87:0.046:2	./.	./.	./.	./.	./.	./.	./.
chr10	73610982	rs2070188	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:2,46:28:48:0.958:2	0/1:0,32:30:32:1.00:2	0/1:0,11:29:11:1.00:2	./.	./.	0/1:46,50:29:96:0.521:2	./.	./.	./.	./.	./.
chr10	73767859	rs3740129	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,5:31:5:1.00:2	0/1:2,3:33:5:0.600:2	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.
chr10	73768085	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:30:67:0.060:2	./.	./.	./.
chr10	73831972	rs201723515	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:30:126:0.032:2	./.	./.	./.	./.
chr10	73846698	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,4:31:77:0.052:2	./.	./.	./.	./.	./.	./.	./.
chr10	73970495	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:30:35:0.114:2	./.	./.	./.	./.	./.
chr10	73983736	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:172,4:33:176:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr10	73992862	rs9275	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,11:28:28:0.393:2	./.	./.	./.	./.	./.	./.
chr10	74096385	rs41282264	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,25:30:75:0.333:2	./.	./.	./.	./.	./.	./.
chr10	74100831	rs41282266	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,32:29:69:0.464:2	./.	./.
chr10	74114536	rs142855784	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,26:32:49:0.531:2	./.	./.	./.	./.
chr10	74127993	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:31:50:0.080:2	./.
chr10	74128030	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:33:85:0.047:2	./.	./.	./.	./.	./.
chr10	74267961	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	74268031	rs3793927	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,4:31:10:0.400:2	0/1:8,9:33:17:0.529:2	./.	0/1:1,9:32:10:0.900:2	0/1:7,4:33:11:0.364:2	0/1:0,4:32:4:1.00:2	0/1:3,15:32:18:0.833:2	./.	0/1:0,22:33:22:1.00:2	./.	0/1:18,8:33:26:0.308:2
chr10	74326407	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:32:96:0.042:2	./.	./.	./.	./.	./.
chr10	74673103	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,3:35:80:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr10	74881951	rs34284214	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	74923670	rs34275727	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,53:32:129:0.411:2	./.	./.	./.	./.	./.
chr10	74934480	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,7:32:89:0.079:2	./.	./.	./.
chr10	74934487	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,6:29:88:0.068:2	./.	./.	./.
chr10	74934537	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,6:30:77:0.078:2	./.	./.	./.
chr10	75003686	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:33:69:0.058:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	75005888	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,4:28:76:0.053:2	./.	./.	./.	./.	./.	./.
chr10	75006864	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:32:36:0.111:2	./.	./.	./.
chr10	75053046	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:33:90:0.044:2	./.	./.	./.
chr10	75082729	rs140368528	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,23:32:58:0.397:2
chr10	75095254	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:31:135:0.030:2	./.	./.	./.
chr10	75184892	rs192959143	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,46:32:114:0.404:2	./.	./.	./.	./.	./.	./.	./.
chr10	75258891	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:33:85:0.047:2	./.	./.
chr10	75258901	rs61761603	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,20:33:49:0.408:2	./.	./.	./.	./.	./.
chr10	75264736	rs61761602	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,63:33:92:0.685:2	./.
chr10	75434362	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,10:29:198:0.051:2	0/1:155,7:31:162:0.043:2	./.	0/1:149,9:30:158:0.057:2	./.	./.	0/1:180,12:32:192:0.063:2	0/1:158,13:31:172:0.076:2
chr10	75434381	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:179,10:32:190:0.053:2	0/1:169,8:31:177:0.045:2	./.	0/1:152,11:32:163:0.067:2	./.	./.	0/1:180,11:31:191:0.058:2	0/1:158,14:33:173:0.081:2
chr10	75434641	rs201458716	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:17,6:31:23:0.261:2	./.	0/1:2,4:32:6:0.667:2	./.	./.	./.	./.	0/1:25,5:30:30:0.167:2	./.	./.	0/1:11,4:33:15:0.267:2
chr10	75434701	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,3:33:27:0.111:2	./.	./.
chr10	75434752	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:46,5:32:51:0.098:2	0/1:24,7:31:31:0.226:2	./.	./.	./.	./.	./.	./.	./.	0/1:36,5:32:41:0.122:2	0/1:41,5:33:46:0.109:2
chr10	75434898	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:87,5:31:92:0.054:2	./.	./.	./.	./.	./.	./.
chr10	75434973	.	T	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,9:29:9:1.00:2	0/1:0,3:34:3:1.00:2	./.	0/1:0,4:33:4:1.00:2	0/1:42,4:31:46:0.087:2	0/1:0,4:35:4:1.00:2	./.	0/1:0,3:32:3:1.00:2	0/1:0,6:34:6:1.00:2	./.	0/1:0,9:30:9:1.00:2
chr10	75435236	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:32:114:0.035:2	0/1:132,4:32:136:0.029:2
chr10	75435239	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,7:30:149:0.047:2	./.	./.	./.	./.	./.
chr10	75435363	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:163,33:33:197:0.168:2	./.	./.	./.	./.	./.	./.
chr10	75435505	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,5:33:88:0.057:2	0/1:61,4:32:65:0.062:2	./.	./.	./.	./.
chr10	75435543	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,3:33:39:0.077:2	./.	./.
chr10	75435546	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,3:34:67:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	75435673	rs200986858	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:128,23:32:151:0.152:2	0/1:94,19:31:113:0.168:2	./.	0/1:144,36:31:180:0.200:2	0/1:113,18:31:131:0.137:2	0/1:111,41:31:152:0.270:2	0/1:103,14:32:118:0.120:2	./.	0/1:128,30:33:158:0.190:2	0/1:89,30:32:119:0.252:2	0/1:150,18:30:168:0.107:2
chr10	75435676	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:154,13:31:168:0.078:2	./.	0/1:11,4:31:15:0.267:2	0/1:181,12:31:193:0.062:2	0/1:130,9:26:139:0.065:2	0/1:160,7:32:167:0.042:2	0/1:130,5:31:135:0.037:2	0/1:140,11:31:151:0.073:2	0/1:171,9:32:180:0.050:2	0/1:121,6:30:127:0.047:2	0/1:152,28:31:180:0.156:2
chr10	75435681	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:187,11:33:198:0.056:2	./.	0/1:169,13:31:182:0.071:2	0/1:131,15:31:146:0.103:2	./.	./.	0/1:132,8:31:140:0.057:2	./.
chr10	75435758	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:140,26:30:166:0.157:2	0/1:175,18:32:193:0.093:2	./.	0/1:173,16:31:189:0.085:2	0/1:174,19:30:193:0.098:2	0/1:171,21:30:192:0.109:2	0/1:158,36:30:194:0.186:2	0/1:169,17:30:186:0.091:2	0/1:174,13:31:187:0.070:2	0/1:171,16:31:187:0.086:2	./.
chr10	75435813	.	G	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:187,10:33:197:0.051:2	0/1:172,16:31:189:0.085:2	0/1:106,14:29:120:0.117:2	0/1:184,16:32:200:0.080:2	0/1:191,7:30:198:0.035:2	0/1:184,14:29:199:0.071:2	./.	./.	0/1:190,7:32:197:0.036:2	0/1:180,18:30:198:0.091:2	0/1:193,4:33:197:0.020:2
chr10	75490340	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,4:32:26:0.154:2	./.	./.	./.
chr10	75490376	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,4:30:28:0.143:2	./.	./.	./.
chr10	75490431	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,4:29:43:0.093:2	./.	./.	./.	./.	./.	./.
chr10	75490480	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,4:30:52:0.077:2	./.	./.	./.	./.	./.	./.
chr10	75490496	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,4:31:57:0.070:2	./.	./.	./.	./.	./.	./.
chr10	75490948	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:32:125:0.032:2	./.	./.	./.
chr10	75533275	rs140577849	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:33:143:0.028:2
chr10	75545616	rs374377773	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:28:7:0.429:2	./.
chr10	75548443	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,5:31:76:0.066:2	./.	./.	./.	./.	./.
chr10	75551088	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:34:118:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	75552331	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:33:137:0.029:2	./.	./.
chr10	75558867	rs2271271	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,122:31:124:0.984:2	0/1:0,74:31:74:1.00:2	0/1:11,15:29:26:0.577:2	0/1:1,125:30:126:0.992:2	0/1:100,48:31:148:0.324:2	0/1:2,146:30:148:0.986:2	0/1:118,60:31:178:0.337:2	0/1:2,141:30:143:0.986:2	0/1:1,140:32:141:0.993:2	0/1:92,72:31:164:0.439:2	0/1:1,161:31:162:0.994:2
chr10	75563076	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,56:29:118:0.479:2	./.	./.	./.	./.
chr10	75563746	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:34:50:0.080:2	./.	./.
chr10	75597289	rs2242255	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:48,38:31:86:0.442:2	0/1:23,15:31:38:0.395:2	./.	./.	0/1:37,30:31:67:0.448:2	0/1:43,59:30:102:0.578:2	./.	./.	./.	./.	./.
chr10	75632760	rs2675671	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:28,34:31:63:0.548:2	0/1:19,18:31:37:0.486:2	./.	0/1:0,78:31:78:1.00:2	./.	0/1:53,36:30:89:0.404:2	0/1:48,20:31:68:0.294:2	0/1:4,84:31:88:0.955:2	0/1:0,97:32:97:1.00:2	0/1:40,18:31:58:0.310:2	0/1:5,79:31:84:0.940:2
chr10	75673101	rs2227564	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,85:29:89:0.955:2	0/1:2,54:29:56:0.964:2	0/1:8,8:31:16:0.500:2	0/1:1,112:29:113:0.991:2	0/1:119,74:30:193:0.383:2	0/1:0,151:29:151:1.00:2	0/1:130,60:29:190:0.316:2	0/1:1,142:29:143:0.993:2	0/1:0,106:30:106:1.00:2	0/1:73,60:30:134:0.451:2	0/1:0,111:30:111:1.00:2
chr10	75673844	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,4:30:72:0.056:2	./.	./.	./.	./.	./.	./.
chr10	75673879	rs2227568	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,14:30:29:0.483:2	0/1:7,17:31:24:0.708:2	./.	./.	0/1:21,15:31:36:0.417:2	0/1:22,11:31:33:0.333:2	./.	./.	./.	./.	./.
chr10	75834653	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:30:76:0.053:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	75865065	rs767809	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,24:32:46:0.522:2	0/1:13,15:32:28:0.536:2	0/1:0,9:32:9:1.00:2	0/1:31,11:31:42:0.262:2	0/1:0,68:32:68:1.00:2	0/1:0,60:31:60:1.00:2	0/1:2,61:31:63:0.968:2	0/1:47,33:32:80:0.413:2	0/1:32,38:32:70:0.543:2	0/1:0,46:32:46:1.00:2	0/1:0,63:31:63:1.00:2
chr10	75871735	rs2131956	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,29:32:63:0.460:2	0/1:31,19:31:50:0.380:2	0/1:0,12:32:12:1.00:2	0/1:41,54:32:95:0.568:2	0/1:2,115:32:117:0.983:2	0/1:0,97:32:97:1.00:2	0/1:0,107:32:107:1.00:2	0/1:43,64:31:108:0.598:2	0/1:0,99:33:100:1.00:2	0/1:0,68:31:68:1.00:2	0/1:0,67:32:67:1.00:2
chr10	75936611	rs10824095	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,13:30:28:0.464:2	0/1:3,10:30:13:0.769:2	0/1:0,5:28:5:1.00:2	0/1:10,22:29:32:0.688:2	0/1:0,28:28:28:1.00:2	0/1:0,29:28:29:1.00:2	0/1:0,24:29:24:1.00:2	0/1:6,18:30:24:0.750:2	0/1:0,34:30:34:1.00:2	0/1:0,21:29:21:1.00:2	0/1:0,24:28:24:1.00:2
chr10	76158278	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:36:99:0.040:2	./.	./.
chr10	76360211	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2	./.	./.
chr10	76818077	rs11594934	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,19:32:33:0.576:2	./.
chr10	76854564	rs3088142	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:31:72:1.00:2	0/1:1,40:31:41:0.976:2	0/1:3,8:29:11:0.727:2	0/1:53,54:30:107:0.505:2	./.	0/1:53,50:30:103:0.485:2	./.	./.	0/1:1,101:31:102:0.990:2	0/1:49,46:30:95:0.484:2	./.
chr10	76855412	rs3740317	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:4,95:31:99:0.960:2	0/1:0,76:31:76:1.00:2	./.	0/1:82,70:31:152:0.461:2	./.	0/1:101,76:30:177:0.429:2	./.	./.	0/1:64,57:31:121:0.471:2	0/1:76,61:32:137:0.445:2	./.
chr10	76855421	rs3740316	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,7:31:23:0.304:2	./.	./.	./.	./.	./.	0/1:64,59:33:123:0.480:2	./.	./.
chr10	76861680	rs6480771	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:2,32:29:34:0.941:2	0/1:0,14:28:14:1.00:2	./.	0/1:31,14:27:45:0.311:2	./.	0/1:34,26:28:60:0.433:2	./.	./.	0/1:0,22:27:22:1.00:2	0/1:18,29:29:47:0.617:2	./.
chr10	76867753	rs41280430	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:28:9:0.333:2	./.	./.	./.	./.	./.	0/1:43,22:29:65:0.338:2	./.	./.
chr10	76867899	rs7912300	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,79:32:79:1.00:2	0/1:0,26:32:26:1.00:2	./.	0/1:74,48:33:122:0.393:2	./.	0/1:55,43:33:98:0.439:2	./.	./.	0/1:57,43:33:100:0.430:2	0/1:53,30:31:83:0.361:2	./.
chr10	76982043	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:174,9:33:183:0.049:2	./.	0/1:173,6:32:179:0.034:2	0/1:157,11:33:168:0.065:2	./.	./.	./.	./.
chr10	77807027	rs1898071	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,45:33:85:0.529:2	0/1:21,36:33:57:0.632:2	0/1:9,8:32:17:0.471:2	0/1:54,41:33:95:0.432:2	./.	0/1:52,43:31:95:0.453:2	0/1:51,33:32:84:0.393:2	0/1:0,110:32:110:1.00:2	0/1:70,56:33:126:0.444:2	0/1:32,34:32:66:0.515:2	./.
chr10	78637575	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2
chr10	78651385	rs45586138	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,16:31:22:0.727:2	./.	./.	./.	./.	./.
chr10	78944590	rs1131824	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,17:31:32:0.531:2	./.	./.	0/1:31,8:32:39:0.205:2	0/1:30,21:32:51:0.412:2	0/1:30,17:33:47:0.362:2	0/1:7,13:32:20:0.650:2	0/1:31,16:32:47:0.340:2
chr10	79163756	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:31:45:0.089:2	./.	./.	./.
chr10	79566632	rs1058198	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:33,38:31:71:0.535:2	0/1:17,16:31:33:0.485:2	0/1:0,16:29:16:1.00:2	./.	0/1:58,53:31:111:0.477:2	./.	./.	0/1:79,36:32:115:0.313:2	0/1:1,88:32:89:0.989:2	0/1:56,26:31:82:0.317:2	0/1:0,63:32:63:1.00:2
chr10	79576772	rs35837544	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:87,63:32:150:0.420:2	./.	./.	./.	./.	./.	./.
chr10	79579222	rs1248634	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,8:30:17:0.471:2	0/1:12,10:30:22:0.455:2	./.	0/1:11,11:29:22:0.500:2	./.	./.	./.
chr10	79580976	rs41274586	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,39:33:77:0.506:2	./.
chr10	79584178	rs1248629	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:19,22:33:41:0.537:2	0/1:23,12:32:35:0.343:2	0/1:0,11:33:11:1.00:2	./.	0/1:3,83:32:86:0.965:2	0/1:51,44:33:95:0.463:2	./.	0/1:0,100:32:100:1.00:2	0/1:0,92:33:92:1.00:2	0/1:26,24:33:50:0.480:2	0/1:1,77:33:78:0.987:2
chr10	79616605	rs1248696	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:28:36:1.00:2	0/1:0,30:27:30:1.00:2	0/1:0,5:28:5:1.00:2	0/1:0,78:27:78:1.00:2	0/1:0,71:27:71:1.00:2	0/1:0,69:27:69:1.00:2	0/1:1,59:26:60:0.983:2	0/1:0,68:27:68:1.00:2	0/1:0,72:28:72:1.00:2	0/1:21,27:27:48:0.563:2	0/1:0,53:28:53:1.00:2
chr10	79628875	rs1248655	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:38,29:28:67:0.433:2	0/1:9,22:28:31:0.710:2	0/1:0,8:30:8:1.00:2	./.	0/1:0,77:28:77:1.00:2	0/1:46,43:28:89:0.483:2	./.	0/1:0,83:29:83:1.00:2	0/1:0,101:30:101:1.00:2	0/1:23,32:29:55:0.582:2	./.
chr10	79741258	rs375599173	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.	./.	./.
chr10	79760818	rs35536566	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,16:29:34:0.471:2	./.	./.	./.	./.	./.	./.
chr10	79762028	rs16935534	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,44:31:101:0.436:2	./.	./.	./.	./.	./.	./.
chr10	79764493	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,4:32:70:0.057:2	./.	./.	./.	./.	./.	./.
chr10	79793688	rs3740253	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,20:30:47:0.426:2	0/1:16,11:30:27:0.407:2	0/1:4,3:31:7:0.429:2	0/1:37,48:29:85:0.565:2	./.	0/1:53,34:30:87:0.391:2	0/1:44,51:29:95:0.537:2	0/1:1,88:28:89:0.989:2	0/1:55,32:30:87:0.368:2	0/1:36,28:31:64:0.438:2	0/1:32,34:29:66:0.515:2
chr10	79795376	rs6496	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,16:31:23:0.696:2	0/1:3,7:30:10:0.700:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	79797684	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,5:19:15:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	79797685	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,7:17:18:0.389:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	79799939	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,14:12:71:0.197:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	79799944	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:47,14:16:61:0.230:2	./.	./.	./.	0/1:88,12:15:100:0.120:2	./.	./.	./.	./.	./.
chr10	79800374	rs114512325	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:32:11:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	79814319	rs72642283	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,24:30:60:0.400:2	./.	./.	./.	./.	./.	./.
chr10	79814609	rs143953715	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,4:30:17:0.235:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	80037707	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:30:35:0.114:2	./.
chr10	80037743	rs10159677	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:13,21:33:34:0.618:2	0/1:17,14:32:31:0.452:2	./.	0/1:21,33:32:54:0.611:2	./.	./.	0/1:2,68:32:70:0.971:2	./.	./.	0/1:0,40:33:40:1.00:2	./.
chr10	81058925	rs139658854	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	81064950	rs34305410	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,24:32:61:0.393:2	./.	./.	./.	./.	./.
chr10	81109458	rs2233719	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,47:31:119:0.395:2	./.	0/1:54,32:31:86:0.372:2	./.	./.	./.	./.	./.
chr10	81146091	rs74319619	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,10:31:15:0.667:2	0/1:8,11:31:19:0.579:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	81192359	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.
chr10	81192414	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.	./.	./.	./.	./.
chr10	81192496	rs144987484	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,42:32:78:0.538:2
chr10	81272627	rs200689309	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,9:30:185:0.049:2	./.	./.	0/1:164,19:32:183:0.104:2	./.	./.
chr10	81272659	rs201647668	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,7:31:143:0.049:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	81272720	rs200745296	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,15:30:134:0.112:2	./.	./.	0/1:113,5:32:118:0.042:2	./.	./.
chr10	81272729	rs377107792	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,38:31:127:0.299:2	./.	./.	./.	./.	./.
chr10	81272731	.	C	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:112,6:26:118:0.051:2	0/1:59,5:26:64:0.078:2	./.	./.	./.	./.	0/1:62,6:28:68:0.088:2	./.	./.	0/1:56,5:26:61:0.082:2	0/1:103,6:25:109:0.055:2
chr10	81272806	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:36:90:0.044:2
chr10	81272814	rs200388618	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,41:33:105:0.390:2	./.	0/1:71,34:34:105:0.324:2	./.	./.
chr10	81272881	rs199829110	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,28:33:94:0.298:2	0/1:47,12:33:59:0.203:2	./.	./.	./.	0/1:126,32:32:158:0.203:2	./.	./.	0/1:92,35:33:127:0.276:2	./.	./.
chr10	81273085	rs1250784	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,10:31:32:0.313:2	./.	0/1:39,22:32:62:0.361:2	./.	./.
chr10	81273490	rs1250785	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:22:6:0.667:2	./.	0/1:1,3:34:4:0.750:2	./.	./.
chr10	81273732	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,18:31:96:0.188:2	0/1:48,13:31:61:0.213:2	./.	./.	./.	0/1:140,16:31:156:0.103:2	./.	./.	0/1:112,10:30:122:0.082:2	./.	./.
chr10	81273804	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:134,32:32:166:0.193:2	0/1:60,19:31:79:0.241:2	./.	./.	./.	./.	0/1:117,4:34:121:0.033:2	./.	./.	./.	./.
chr10	81273853	rs139857142	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,15:31:107:0.140:2	0/1:106,23:30:129:0.178:2	./.	./.	0/1:104,29:32:133:0.218:2
chr10	81273879	rs1250786	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,60:32:83:0.723:2	./.	0/1:76,91:33:167:0.545:2	./.	./.
chr10	81273886	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,7:31:166:0.042:2	./.	./.	0/1:163,6:33:169:0.036:2	./.	./.
chr10	81274029	rs150049823	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,12:31:85:0.141:2	0/1:92,19:32:111:0.171:2	./.	0/1:67,5:28:72:0.069:2	0/1:96,10:31:106:0.094:2	./.	0/1:77,5:31:82:0.061:2	./.
chr10	81274062	rs199493583	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,16:30:116:0.138:2	0/1:47,6:30:53:0.113:2	./.	./.	./.	0/1:153,9:30:162:0.056:2	./.	./.	0/1:102,18:31:120:0.150:2	./.	./.
chr10	81274136	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,6:29:178:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	81274334	rs1250787	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,172:33:172:1.00:2	0/1:109,81:33:190:0.426:2	0/1:110,79:33:189:0.418:2	./.	0/1:98,80:32:178:0.449:2
chr10	81274347	rs199491910	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,6:33:198:0.030:2	./.	./.	0/1:179,10:30:189:0.053:2	./.	./.
chr10	81274640	rs199491911	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:30:29:0.138:2	0/1:35,14:31:49:0.286:2	./.	./.	0/1:37,15:31:52:0.288:2
chr10	81275154	rs143226021	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,13:31:44:0.295:2	./.	0/1:43,20:29:63:0.317:2	./.	./.
chr10	81275443	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,23:32:191:0.120:2	0/1:97,5:31:102:0.049:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	81275477	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:170,21:31:192:0.110:2	0/1:133,9:31:142:0.063:2	./.	./.	./.	0/1:193,6:32:199:0.030:2	./.	./.	0/1:184,11:31:195:0.056:2	./.	./.
chr10	81275626	rs116942435	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,32:30:73:0.438:2	0/1:108,28:31:136:0.206:2	./.	./.	0/1:123,34:30:157:0.217:2
chr10	81275651	rs192862574	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,3:36:103:0.029:2	./.	./.
chr10	81275669	rs1250789	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,12:33:35:0.343:2	./.	0/1:46,30:33:76:0.395:2	./.	./.
chr10	81275738	rs1250790	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,23:32:63:0.365:2	./.	0/1:42,33:31:75:0.440:2	./.	./.
chr10	81275743	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,9:33:94:0.096:2	./.	./.	./.	./.	./.
chr10	81275840	rs1250791	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,41:27:131:0.313:2	./.	0/1:97,52:29:149:0.349:2	./.	./.
chr10	81275976	rs141772176	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,31:32:67:0.463:2	0/1:55,35:32:90:0.389:2	./.	./.	0/1:68,69:32:137:0.504:2
chr10	81276176	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,6:29:53:0.113:2	./.	./.	./.	./.	0/1:60,6:29:66:0.091:2	./.	./.	0/1:46,4:33:50:0.080:2	./.	./.
chr10	81317045	rs1965708	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:189,5:31:194:0.026:2	./.	./.	./.	./.	0/1:113,74:31:187:0.396:2	0/1:124,66:31:190:0.347:2	./.	./.	0/1:114,70:31:184:0.380:2
chr10	81317292	rs1965707	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,80:32:144:0.556:2	0/1:150,25:32:175:0.143:2	0/1:147,30:33:177:0.169:2	0/1:128,28:32:156:0.179:2	0/1:142,21:32:163:0.129:2
chr10	81317313	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,23:29:169:0.136:2	./.	./.	./.	./.	./.
chr10	81318663	rs17886395	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,61:31:139:0.439:2	0/1:86,57:32:143:0.399:2	./.	0/1:88,71:31:159:0.447:2	./.	./.
chr10	81319092	rs192907309	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,5:33:188:0.027:2	./.	./.	./.	./.	./.
chr10	81319184	rs201847938	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:173,12:31:185:0.065:2	0/1:147,19:30:166:0.114:2	0/1:107,5:30:112:0.045:2	0/1:181,7:29:188:0.037:2	0/1:186,6:29:192:0.031:2	./.	./.	./.	0/1:187,5:31:192:0.026:2	0/1:175,16:30:191:0.084:2	0/1:173,6:29:179:0.034:2
chr10	81319214	rs1059046	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,148:31:149:0.993:2	0/1:0,97:31:97:1.00:2	0/1:1,73:30:74:0.986:2	0/1:3,171:31:174:0.983:2	0/1:2,174:30:176:0.989:2	0/1:115,73:30:188:0.388:2	./.	./.	0/1:127,64:31:191:0.335:2	0/1:1,140:30:141:0.993:2	0/1:114,75:30:189:0.397:2
chr10	81371341	rs3997772	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,14:32:31:0.452:2	0/1:23,10:31:33:0.303:2	./.	0/1:9,8:31:17:0.471:2	./.	./.
chr10	81371363	rs143148279	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:32:38:0.079:2	0/1:50,4:33:54:0.074:2	./.	./.	./.
chr10	81371398	rs3997773	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,4:30:53:0.075:2	0/1:62,6:31:68:0.088:2	0/1:39,4:30:43:0.093:2	0/1:57,8:32:65:0.123:2	./.	./.	0/1:56,6:32:62:0.097:2
chr10	81371406	rs3997774	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,4:31:53:0.075:2	0/1:57,6:31:63:0.095:2	0/1:39,4:31:43:0.093:2	0/1:54,10:31:64:0.156:2	./.	./.	0/1:53,7:30:60:0.117:2
chr10	81371421	rs2678553	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,4:30:62:0.065:2	./.	0/1:33,14:29:47:0.298:2	./.	0/1:23,17:27:41:0.425:2	./.	./.
chr10	81371637	rs1059047	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:167,21:29:189:0.112:2	0/1:165,27:28:193:0.141:2	0/1:107,17:28:124:0.137:2	0/1:179,17:27:196:0.087:2	0/1:176,19:28:195:0.097:2	0/1:122,74:29:196:0.378:2	./.	./.	0/1:181,12:30:193:0.062:2	0/1:165,26:29:192:0.136:2	0/1:183,10:28:193:0.052:2
chr10	81371698	rs72659390	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,96:31:189:0.508:2	./.	./.	0/1:101,94:32:195:0.482:2	0/1:93,103:31:196:0.526:2	./.	./.	0/1:75,106:31:181:0.586:2
chr10	81371729	rs1136450	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,156:31:158:0.987:2	0/1:3,117:31:121:0.975:2	0/1:2,35:31:37:0.946:2	0/1:118,59:32:177:0.333:2	0/1:5,117:31:123:0.959:2	0/1:126,64:31:190:0.337:2	./.	./.	0/1:131,54:32:186:0.292:2	0/1:4,143:32:147:0.973:2	0/1:128,55:31:183:0.301:2
chr10	81372081	rs1136451	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,79:29:186:0.425:2	0/1:130,60:29:190:0.316:2	./.	0/1:104,78:31:182:0.429:2	./.	./.
chr10	81372994	rs1059056	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:187,10:32:197:0.051:2	./.	./.	./.	./.	./.	0/1:187,6:33:193:0.031:2	./.
chr10	81373521	rs141764116	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,72:29:196:0.367:2	./.	./.	./.	./.	./.
chr10	81373542	rs3997777	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,87:32:196:0.444:2	0/1:143,47:32:190:0.247:2	0/1:150,45:33:195:0.231:2	0/1:144,48:33:192:0.250:2	0/1:148,47:33:195:0.241:2
chr10	81373770	rs10351	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	81373777	rs4253527	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,90:30:198:0.455:2	./.	0/1:104,77:31:181:0.425:2	./.	./.
chr10	81373789	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:31:197:0.025:2	./.	./.	./.	./.
chr10	81463704	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:164,17:33:181:0.094:2	./.	0/1:110,33:32:143:0.231:2	0/1:103,21:32:124:0.169:2	0/1:86,22:32:108:0.204:2	./.	./.	./.
chr10	81465798	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:64,10:27:74:0.135:2	0/1:31,5:31:36:0.139:2	./.	./.	./.	./.	0/1:64,17:30:81:0.210:2	./.	0/1:56,14:29:70:0.200:2	./.	./.
chr10	81465826	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,17:31:88:0.193:2	0/1:55,12:32:67:0.179:2	0/1:79,14:31:94:0.151:2	./.	./.	./.
chr10	81466009	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,53:30:129:0.411:2	./.	./.	./.	./.	./.
chr10	81466030	rs201336686	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,21:27:126:0.167:2	./.	./.	./.	./.	./.
chr10	81466221	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,7:31:71:0.099:2	./.	./.	./.
chr10	81466340	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,6:32:99:0.061:2	0/1:63,7:31:70:0.100:2	./.	./.	./.	0/1:182,4:32:186:0.022:2	./.	0/1:182,5:31:187:0.027:2	./.	./.	./.
chr10	81470400	rs201697958	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:97,78:31:175:0.446:2	0/1:76,58:31:134:0.433:2	0/1:17,5:31:22:0.227:2	./.	./.	./.	./.	0/1:138,53:31:191:0.277:2	./.	./.	0/1:172,4:34:178:0.023:2
chr10	81470420	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,36:29:150:0.240:2	./.	./.	./.	./.	./.
chr10	81470483	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:36,10:32:46:0.217:2	0/1:28,10:31:38:0.263:2	./.	./.	./.	./.	./.	0/1:48,8:32:56:0.143:2	./.	./.	./.
chr10	81604352	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,3:33:51:0.059:2	./.	./.	./.	./.
chr10	81604471	.	A	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:80,5:32:85:0.059:2	0/1:21,3:29:24:0.125:2	./.	./.	0/1:176,4:32:180:0.022:2	0/1:177,5:32:182:0.027:2	0/1:174,6:31:180:0.033:2	0/1:178,4:32:182:0.022:2	./.	0/1:167,4:32:171:0.023:2
chr10	81608531	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:89,70:31:159:0.440:2	0/1:74,46:32:120:0.383:2	0/1:27,8:27:35:0.229:2	./.	./.	./.	./.	0/1:132,45:31:177:0.254:2	./.	./.	./.
chr10	81608551	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,28:30:142:0.197:2	./.	./.	./.	./.	./.
chr10	81608614	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:34,13:31:47:0.277:2	0/1:23,6:32:29:0.207:2	./.	./.	0/1:34,6:32:40:0.150:2	./.	./.	0/1:42,6:32:48:0.125:2	./.	./.	./.
chr10	81609619	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,71:32:73:0.973:2	0/1:44,31:32:75:0.413:2	./.	0/1:1,34:33:35:0.971:2	./.	./.
chr10	81609718	.	G	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,8:33:8:1.00:2	0/1:0,3:30:3:1.00:2	./.	0/1:176,12:33:188:0.064:2	./.	0/1:180,8:30:188:0.043:2	./.	0/1:164,18:32:182:0.099:2	./.	./.	0/1:0,2:32:2:1.00:2
chr10	81609720	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,7:32:177:0.040:2	./.	./.	./.
chr10	81610177	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:30:116:0.034:2	./.	./.	./.	./.	./.
chr10	81610187	rs201377212	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.
chr10	81610228	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.
chr10	81697818	rs1051246	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,19:33:64:0.297:2	0/1:25,18:32:43:0.419:2	./.	./.	./.	0/1:66,52:32:118:0.441:2	0/1:51,55:33:106:0.519:2	./.	./.	./.	./.
chr10	81697868	rs3088308	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,46:29:98:0.469:2	./.	./.	./.	./.	./.
chr10	81701722	rs2243639	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,14:30:32:0.438:2	0/1:9,9:31:18:0.500:2	./.	0/1:0,40:30:40:1.00:2	0/1:55,22:30:77:0.286:2	0/1:0,44:29:44:1.00:2	0/1:1,56:29:57:0.982:2	0/1:0,41:30:41:1.00:2	0/1:0,32:30:32:1.00:2	0/1:24,14:30:38:0.368:2	0/1:0,32:29:32:1.00:2
chr10	81702210	rs17878336	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:22,17:30:39:0.436:2	0/1:11,9:28:20:0.450:2	./.	./.	./.	./.	0/1:29,34:27:63:0.540:2	./.	./.	./.	./.
chr10	81706281	rs6413520	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,6:29:19:0.316:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	81706324	rs721917	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,16:29:23:0.696:2	0/1:1,161:29:162:0.994:2	0/1:102,72:29:174:0.414:2	0/1:2,163:29:165:0.988:2	0/1:107,89:29:196:0.454:2	0/1:111,86:29:197:0.437:2	0/1:0,167:30:167:1.00:2	0/1:63,66:29:129:0.512:2	0/1:1,140:28:141:0.993:2
chr10	81841692	rs1932574	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:18,19:31:37:0.514:2	0/1:16,18:31:34:0.529:2	0/1:0,2:33:2:1.00:2	./.	0/1:0,32:30:32:1.00:2	0/1:19,10:32:29:0.345:2	0/1:1,32:31:33:0.970:2	0/1:0,37:31:37:1.00:2	0/1:20,17:31:37:0.459:2	./.	./.
chr10	81917708	rs1079242	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:41,30:30:71:0.423:2	0/1:31,14:28:45:0.311:2	./.	0/1:61,54:30:115:0.470:2	./.	./.	0/1:49,58:29:107:0.542:2	./.	0/1:57,44:30:101:0.436:2	./.	0/1:43,48:29:91:0.527:2
chr10	81925866	rs72807973	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,9:30:43:0.209:2	./.
chr10	81926702	rs1049550	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:21,9:28:30:0.300:2	0/1:14,13:31:27:0.481:2	./.	0/1:12,11:30:23:0.478:2	./.	./.	0/1:33,19:29:52:0.365:2	./.	0/1:20,18:31:38:0.474:2	./.	0/1:13,11:26:24:0.458:2
chr10	81926718	rs2228427	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,8:29:28:0.286:2	./.	./.	0/1:15,17:31:32:0.531:2	./.	./.
chr10	81927002	rs147610631	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,9:32:29:0.310:2	./.
chr10	81927059	rs2229554	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,22:31:37:0.595:2	./.	./.
chr10	81928830	rs34003188	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,45:29:94:0.479:2	./.	./.	./.
chr10	82033594	rs2993763	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,45:32:84:0.536:2	0/1:30,47:32:77:0.610:2	./.	./.	./.	0/1:0,108:31:108:1.00:2	0/1:70,45:32:115:0.391:2	./.	0/1:1,99:33:100:0.990:2	0/1:42,50:32:93:0.543:2	0/1:59,46:33:105:0.438:2
chr10	82034355	rs118204006	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:34:134:0.030:2	./.	./.	./.
chr10	82034842	rs10887711	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,19:29:19:1.00:2	0/1:0,15:29:15:1.00:2	./.	./.	./.	0/1:0,28:29:28:1.00:2	0/1:22,15:29:37:0.405:2	./.	0/1:0,28:30:28:1.00:2	0/1:15,13:31:29:0.464:2	0/1:21,8:26:29:0.276:2
chr10	82034854	rs10788546	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,19:30:20:0.950:2	0/1:0,15:31:15:1.00:2	./.	./.	./.	0/1:0,33:30:33:1.00:2	0/1:22,16:31:38:0.421:2	./.	0/1:0,27:31:27:1.00:2	0/1:16,10:30:26:0.385:2	0/1:17,9:29:26:0.346:2
chr10	82040052	rs1143694	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,41:32:41:1.00:2	0/1:0,26:32:26:1.00:2	./.	./.	./.	0/1:0,81:32:81:1.00:2	0/1:64,37:32:101:0.366:2	./.	0/1:0,54:33:54:1.00:2	0/1:29,29:32:58:0.500:2	0/1:0,64:32:64:1.00:2
chr10	82045354	rs10887721	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,28:32:49:0.571:2	./.	./.	0/1:46,39:33:85:0.459:2	./.	./.
chr10	82095968	rs1340383	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,18:30:18:1.00:2	0/1:0,13:33:13:1.00:2	./.	./.	./.	0/1:3,7:33:10:0.700:2	0/1:0,19:33:19:1.00:2	./.	0/1:0,32:33:32:1.00:2	0/1:8,11:34:19:0.579:2	0/1:0,22:33:22:1.00:2
chr10	82098881	rs35605779	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,49:32:111:0.450:2	./.	./.
chr10	82122793	rs1538818	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,45:31:98:0.459:2	./.	./.	./.	./.	./.
chr10	82126600	rs1047951	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,20:31:38:0.526:2	./.	./.	./.	./.	./.
chr10	82276061	rs72821609	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,19:31:48:0.396:2	./.	./.	./.	./.
chr10	82331292	rs72805712	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:12,17:31:29:0.586:2	0/1:12,6:32:18:0.333:2	./.	./.	./.	./.	./.	./.	./.	0/1:12,17:30:29:0.586:2	./.
chr10	82363340	rs7069048	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,14:32:35:0.400:2	0/1:16,8:32:24:0.333:2	./.	0/1:14,12:32:26:0.462:2	0/1:13,12:31:25:0.480:2	0/1:11,14:30:25:0.560:2	0/1:5,17:30:22:0.773:2	./.	./.	0/1:0,18:32:18:1.00:2	./.
chr10	82363404	rs7075840	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,12:29:42:0.286:2	0/1:18,7:29:25:0.280:2	0/1:7,5:31:12:0.417:2	0/1:22,15:27:37:0.405:2	0/1:10,3:28:13:0.231:2	0/1:19,17:28:36:0.472:2	0/1:11,7:25:18:0.389:2	./.	./.	0/1:0,21:28:21:1.00:2	./.
chr10	82369202	rs12243537	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,18:31:41:0.439:2	./.
chr10	82369219	rs17107368	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,28:32:67:0.418:2	./.	./.	./.	0/1:28,22:32:50:0.440:2
chr10	82394146	rs71483314	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,23:32:57:0.404:2	0/1:16,14:31:30:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	84744926	rs17101193	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,19:28:36:0.528:2	./.	./.	0/1:19,20:30:39:0.513:2
chr10	84745040	rs17101196	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,9:30:42:0.214:2	./.	./.	0/1:24,28:31:52:0.538:2
chr10	84745256	rs2295933	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,18:30:18:1.00:2	0/1:0,20:31:20:1.00:2	./.	./.	./.	0/1:25,7:30:32:0.219:2	0/1:22,7:29:29:0.241:2	./.	0/1:25,13:31:38:0.342:2	0/1:15,3:32:18:0.167:2	./.
chr10	85909822	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:33:179:0.022:2	./.	./.	./.
chr10	85933688	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:30:40:0.100:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	85944472	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,15:31:34:0.441:2	./.
chr10	85944485	rs144656005	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	85956268	rs12781048	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,32:33:92:0.348:2
chr10	85956349	rs11593005	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,25:31:72:0.347:2	0/1:22,18:31:40:0.450:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	85960395	rs4933975	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,64:29:142:0.451:2	0/1:47,38:29:85:0.447:2	0/1:13,16:30:29:0.552:2	0/1:111,79:31:190:0.416:2	0/1:4,182:29:186:0.978:2	0/1:0,186:29:186:1.00:2	0/1:106,86:29:192:0.448:2	./.	0/1:110,86:30:197:0.439:2	0/1:98,72:30:170:0.424:2	0/1:3,180:30:183:0.984:2
chr10	85962879	rs147346345	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,58:32:133:0.439:2	0/1:40,53:32:93:0.570:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	85972043	rs10749482	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,47:33:150:0.313:2	0/1:57,58:32:115:0.504:2	0/1:0,102:33:102:1.00:2	./.	0/1:181,8:34:189:0.042:2	0/1:45,53:32:98:0.541:2	0/1:31,64:32:95:0.674:2	./.
chr10	85974013	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:25:43:0.093:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	85974231	rs45584033	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,14:31:28:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr10	85974236	rs3814213	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,23:29:23:1.00:2	0/1:0,18:29:18:1.00:2	./.	0/1:15,13:28:28:0.464:2	0/1:0,11:29:11:1.00:2	0/1:0,24:30:24:1.00:2	./.	./.	0/1:8,13:30:21:0.619:2	0/1:7,4:29:11:0.364:2	0/1:1,14:29:15:0.933:2
chr10	85978939	rs4244947	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,23:31:48:0.479:2	0/1:15,10:31:25:0.400:2	./.	0/1:8,13:31:21:0.619:2	0/1:0,29:29:29:1.00:2	0/1:0,33:30:33:1.00:2	./.	./.	0/1:35,20:31:55:0.364:2	0/1:8,11:31:19:0.579:2	0/1:0,47:31:47:1.00:2
chr10	85978991	rs7895270	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,11:32:24:0.458:2	0/1:16,10:30:26:0.385:2	0/1:1,28:31:29:0.966:2	./.	./.	0/1:24,20:33:44:0.455:2	./.	./.
chr10	85981801	rs6585847	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,29:32:75:0.387:2	0/1:34,11:32:45:0.244:2	0/1:5,7:33:12:0.583:2	0/1:49,28:31:77:0.364:2	0/1:0,31:31:31:1.00:2	0/1:0,46:31:46:1.00:2	./.	./.	0/1:41,15:32:56:0.268:2	0/1:49,14:32:63:0.222:2	0/1:0,60:31:60:1.00:2
chr10	85981842	rs12217769	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:20,11:29:31:0.355:2	0/1:14,7:32:21:0.333:2	./.	./.	0/1:5,6:31:11:0.545:2	./.	./.	./.	./.	0/1:19,8:32:27:0.296:2	0/1:0,18:31:18:1.00:2
chr10	85981889	rs12218853	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:15,22:29:37:0.595:2	0/1:12,10:31:22:0.455:2	./.	./.	0/1:28,18:31:46:0.391:2	./.	./.	./.	./.	0/1:25,11:31:36:0.306:2	0/1:0,32:31:32:1.00:2
chr10	85984323	rs11200925	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:20,28:32:48:0.583:2	0/1:12,16:31:28:0.571:2	0/1:3,3:32:6:0.500:2	./.	0/1:38,23:32:61:0.377:2	./.	./.	./.	./.	0/1:22,28:33:50:0.560:2	0/1:1,103:32:104:0.990:2
chr10	85984423	rs11200926	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:19,21:32:40:0.525:2	0/1:15,19:31:34:0.559:2	0/1:3,6:33:9:0.667:2	./.	0/1:19,43:32:63:0.694:2	./.	./.	./.	./.	0/1:32,31:32:63:0.492:2	0/1:0,53:31:53:1.00:2
chr10	85984444	rs11200927	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,40:33:85:0.471:2	./.
chr10	85984723	rs11200928	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:22,17:31:39:0.436:2	0/1:7,15:32:22:0.682:2	0/1:0,3:29:3:1.00:2	./.	0/1:32,16:29:48:0.333:2	./.	./.	./.	./.	0/1:20,17:30:37:0.459:2	0/1:0,51:31:51:1.00:2
chr10	85985225	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:29:48:0.083:2	./.	./.	./.	./.	./.
chr10	85991784	rs3814211	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,36:32:83:0.434:2	0/1:32,28:31:60:0.467:2	./.
chr10	85992122	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:147,4:32:151:0.026:2	./.	./.	./.	./.	./.	./.
chr10	85992478	rs3814210	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,47:32:86:0.547:2	0/1:22,17:32:39:0.436:2	./.	0/1:69,50:32:119:0.420:2	0/1:76,50:31:126:0.397:2	0/1:70,50:32:120:0.417:2	0/1:67,54:31:121:0.446:2	0/1:81,50:31:131:0.382:2	0/1:61,61:33:123:0.500:2	0/1:59,36:32:95:0.379:2	./.
chr10	85992511	rs3814209	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,52:30:86:0.605:2	0/1:18,22:30:40:0.550:2	./.	0/1:62,55:30:117:0.470:2	0/1:72,48:29:120:0.400:2	0/1:63,58:29:121:0.479:2	0/1:76,50:29:126:0.397:2	0/1:83,60:30:143:0.420:2	0/1:69,59:31:128:0.461:2	0/1:61,37:30:98:0.378:2	./.
chr10	85993836	rs4933986	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,15:28:15:1.00:2	0/1:0,9:25:9:1.00:2	./.	0/1:0,10:28:10:1.00:2	0/1:0,11:27:11:1.00:2	0/1:0,7:26:7:1.00:2	0/1:0,6:25:6:1.00:2	0/1:0,22:28:22:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,9:27:9:1.00:2	0/1:0,7:25:7:1.00:2
chr10	85993910	rs3814206	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,22:32:37:0.611:2	0/1:15,11:32:26:0.423:2	./.	0/1:26,15:31:41:0.366:2	0/1:15,24:30:39:0.615:2	0/1:13,17:32:30:0.567:2	0/1:29,22:31:51:0.431:2	0/1:31,12:32:43:0.279:2	0/1:20,23:31:43:0.535:2	0/1:25,9:30:34:0.265:2	0/1:1,31:32:32:0.969:2
chr10	85997105	rs11200933	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,22:29:22:1.00:2
chr10	85997250	rs10887259	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:29:4:1.00:2	./.	./.	./.	0/1:0,3:22:4:1.00:2	./.	./.	./.
chr10	86004865	rs11200938	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,50:32:106:0.472:2	./.	./.	./.	./.	./.	./.	./.
chr10	86004873	rs2279227	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:58,40:30:98:0.408:2	0/1:17,21:30:38:0.553:2	./.	0/1:62,49:30:111:0.441:2	./.	0/1:60,47:29:107:0.439:2	0/1:100,55:29:155:0.355:2	0/1:0,122:30:122:1.00:2	0/1:37,35:29:72:0.486:2	0/1:0,99:29:99:1.00:2	0/1:0,78:29:78:1.00:2
chr10	86008715	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,25:32:47:0.532:2	./.
chr10	86012713	rs1042454	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,36:31:75:0.480:2	./.	0/1:22,25:31:47:0.532:2	0/1:54,32:32:86:0.372:2	0/1:3,76:31:79:0.962:2	0/1:33,31:33:64:0.484:2	0/1:1,67:32:68:0.985:2	./.
chr10	86017740	rs61730895	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,24:30:48:0.500:2	./.
chr10	86131003	rs17103381	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,64:32:110:0.582:2	./.
chr10	86131059	rs3814205	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,74:33:132:0.561:2	0/1:38,45:32:83:0.542:2	./.	./.	./.	0/1:57,65:33:122:0.533:2	0/1:66,58:33:124:0.468:2	./.
chr10	86273249	rs11557865	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,10:31:22:0.455:2	0/1:15,21:32:36:0.583:2	./.	./.	./.	0/1:26,22:31:48:0.458:2	0/1:19,14:32:33:0.424:2	./.
chr10	87484382	rs2306265	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,11:32:32:0.344:2	./.
chr10	87489288	rs3812646	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,13:33:43:0.302:2	./.
chr10	87489317	rs3812645	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,7:32:29:0.241:2	./.
chr10	87489318	rs3812644	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,7:27:29:0.241:2	./.
chr10	87898729	rs17106320	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,41:31:91:0.451:2	./.
chr10	87966371	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,8:30:105:0.076:2	./.	./.	./.	./.	./.
chr10	88203068	rs7094132	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:30:38:1.00:2	0/1:0,18:29:18:1.00:2	0/1:1,4:28:5:0.800:2	0/1:0,45:29:45:1.00:2	0/1:0,44:29:44:1.00:2	0/1:0,41:29:41:1.00:2	0/1:34,32:29:66:0.485:2	0/1:1,48:29:49:0.980:2	0/1:0,37:30:37:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,51:29:51:1.00:2
chr10	88277457	rs10887621	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,45:31:85:0.529:2	0/1:31,25:32:56:0.446:2	0/1:6,10:30:16:0.625:2	0/1:80,67:31:147:0.456:2	0/1:64,40:32:104:0.385:2	0/1:58,61:31:119:0.513:2	./.	0/1:67,62:31:129:0.481:2	0/1:72,55:33:127:0.433:2	./.	./.
chr10	88277674	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:32:102:0.039:2	./.
chr10	88414569	rs2675703	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:33:4:1.00:2	0/1:24,24:32:48:0.500:2	./.	./.	./.	0/1:23,41:32:64:0.641:2	./.	0/1:24,21:33:45:0.467:2	0/1:0,22:32:22:1.00:2
chr10	88414570	rs11202106	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,13:32:36:0.361:2	0/1:25,18:31:43:0.419:2	./.	./.	0/1:0,31:32:31:1.00:2	./.	./.
chr10	88419076	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,3:29:14:0.214:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	88422028	rs34191521	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,28:30:50:0.560:2	./.	./.	0/1:27,21:29:48:0.438:2	./.
chr10	88422116	rs1079610	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:31:4:1.00:2	0/1:23,26:30:49:0.531:2	0/1:19,14:31:33:0.424:2	0/1:23,16:31:39:0.410:2	0/1:0,39:31:39:1.00:2	0/1:17,32:31:49:0.653:2	0/1:0,29:32:29:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,19:31:19:1.00:2
chr10	88422151	rs3740337	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,9:31:26:0.346:2	0/1:26,10:32:36:0.278:2	./.	./.	0/1:0,24:34:24:1.00:2	./.	./.
chr10	88441223	rs35507268	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	88466442	rs138251566	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,45:28:132:0.341:2	./.	./.	./.	./.	./.
chr10	88466465	rs45459491	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,55:33:111:0.495:2	0/1:36,26:33:62:0.419:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	88476170	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	0/1:2,3:23:5:0.600:2	./.	./.	./.	./.	./.
chr10	88477842	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:31:152:0.026:2	./.	./.	./.	./.	./.
chr10	88635779	rs11528010	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.	0/1:84,65:32:149:0.436:2	0/1:125,70:31:195:0.359:2	./.	0/1:187,9:29:196:0.046:2	./.
chr10	88649915	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:32:188:0.021:2	./.	./.	./.	./.	./.
chr10	88649928	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:195,4:33:199:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr10	88649942	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr10	88649952	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,4:33:194:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr10	88651895	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:31:36:0.111:2	./.
chr10	88672076	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:33:103:0.039:2	./.	./.	./.	./.
chr10	88676986	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,39:29:182:0.214:2	./.	0/1:171,24:33:195:0.123:2	./.	./.
chr10	88679035	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:152,6:26:158:0.038:2	./.	./.	./.	./.	./.	./.
chr10	88679061	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,5:31:119:0.042:2	./.	./.	./.	./.	0/1:133,4:32:138:0.029:2	./.	./.
chr10	88679129	rs201509164	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,8:31:113:0.071:2	./.	0/1:91,13:32:105:0.125:2	./.	./.
chr10	88679200	rs35572415	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:30:14:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	88681397	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:129,5:28:134:0.037:2	./.	./.	./.	./.	./.	0/1:133,7:31:140:0.050:2	./.	./.	./.	./.
chr10	88683146	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:134,4:33:138:0.029:2	./.	./.	./.	./.	./.	./.
chr10	88696622	rs34587013	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,48:31:109:0.440:2	./.	./.	./.	./.	./.	0/1:45,31:32:76:0.408:2
chr10	88702090	rs137969913	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,24:33:47:0.511:2	./.	./.
chr10	88702350	rs4934281	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,21:31:21:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,17:31:18:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,14:32:14:1.00:2
chr10	88702390	rs10887673	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:30:3:1.00:2	0/1:2,5:33:7:0.714:2	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.
chr10	88703243	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,9:16:86:0.105:2
chr10	88717140	rs4244973	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:31:28:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,32:31:32:1.00:2
chr10	88717154	rs3750823	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:34:2:1.00:2	0/1:0,38:33:38:1.00:2	./.	0/1:0,33:32:33:1.00:2	0/1:26,22:32:48:0.458:2	0/1:0,37:32:37:1.00:2	0/1:0,26:33:26:1.00:2	0/1:15,20:32:35:0.571:2	0/1:20,16:33:36:0.444:2
chr10	88719760	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:31:96:0.042:2	./.	./.	./.	./.
chr10	88719789	rs760113	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:43,49:30:93:0.533:2	0/1:27,38:29:65:0.585:2	0/1:8,8:31:16:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	88722398	rs9864	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:26,36:31:62:0.581:2	0/1:23,19:31:42:0.452:2	0/1:9,3:29:12:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	88730312	rs4869	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,39:28:71:0.549:2	0/1:23,23:29:46:0.500:2	0/1:4,9:29:13:0.692:2	0/1:0,103:29:103:1.00:2	0/1:0,81:29:81:1.00:2	0/1:0,91:29:91:1.00:2	0/1:3,108:29:111:0.973:2	0/1:0,90:29:90:1.00:2	0/1:0,85:30:85:1.00:2	0/1:2,83:29:85:0.976:2	0/1:3,100:29:103:0.971:2
chr10	88761451	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,6:32:135:0.044:2	./.
chr10	88761463	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:31:147:0.027:2	./.
chr10	88768112	.	T	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:110,15:31:125:0.120:2	0/1:192,7:32:199:0.035:2	0/1:151,10:31:161:0.062:2	0/1:177,19:32:196:0.097:2	0/1:192,4:32:196:0.020:2	0/1:192,6:32:198:0.030:2	0/1:184,6:31:190:0.032:2
chr10	88768131	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:136,6:31:142:0.042:2	./.	0/1:166,5:31:171:0.029:2	0/1:187,10:32:197:0.051:2	./.	0/1:186,9:32:195:0.046:2	./.
chr10	88768138	.	A	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:131,11:32:142:0.077:2	0/1:187,5:32:192:0.026:2	0/1:157,7:33:164:0.043:2	0/1:183,9:32:192:0.047:2	./.	./.	./.
chr10	88768185	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:132,7:29:139:0.050:2	./.	./.	./.	./.	./.	./.
chr10	88768253	rs2641563	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,11:30:19:0.579:2	0/1:0,137:30:137:1.00:2	0/1:2,89:29:91:0.978:2	0/1:1,134:29:135:0.993:2	0/1:1,81:29:82:0.988:2	0/1:0,136:29:136:1.00:2	0/1:1,146:31:147:0.993:2	0/1:0,115:30:115:1.00:2	0/1:0,123:30:123:1.00:2
chr10	88768408	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:115,8:29:124:0.065:2	./.	./.	./.	./.	./.	0/1:95,4:31:99:0.040:2	./.	./.	0/1:70,4:30:74:0.054:2	./.
chr10	88768423	rs2641562	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,6:30:11:0.545:2	0/1:23,99:29:122:0.811:2	0/1:57,37:29:94:0.394:2	0/1:22,88:29:110:0.800:2	0/1:46,43:29:89:0.483:2	0/1:21,86:28:107:0.804:2	0/1:11,66:30:77:0.857:2	0/1:42,36:28:78:0.462:2	0/1:19,85:28:104:0.817:2
chr10	88768438	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:102,26:30:128:0.203:2	0/1:46,21:31:67:0.313:2	0/1:8,3:30:11:0.273:2	0/1:113,20:31:135:0.150:2	0/1:84,16:32:101:0.160:2	0/1:99,21:29:120:0.175:2	0/1:82,15:31:97:0.155:2	0/1:113,15:32:128:0.117:2	0/1:74,11:31:85:0.129:2	0/1:74,14:30:88:0.159:2	0/1:100,15:30:115:0.130:2
chr10	88768460	rs201134601	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:33:137:0.029:2
chr10	88768576	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:189,4:32:193:0.021:2	0/1:190,6:32:196:0.031:2	./.	./.	0/1:189,5:33:194:0.026:2	./.	0/1:183,5:32:188:0.027:2	./.	./.	./.	./.
chr10	88768582	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:187,7:32:194:0.036:2	0/1:188,7:32:196:0.036:2	./.	0/1:189,5:32:194:0.026:2	0/1:188,8:32:196:0.041:2	./.	0/1:176,11:32:187:0.059:2	0/1:188,5:32:193:0.026:2	./.	./.	./.
chr10	88768657	rs1745901	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,21:28:41:0.512:2	0/1:2,177:29:179:0.989:2	0/1:0,175:29:175:1.00:2	0/1:0,185:29:185:1.00:2	0/1:2,171:29:173:0.988:2	0/1:7,171:29:178:0.961:2	0/1:0,181:31:181:1.00:2	0/1:2,177:30:179:0.989:2	0/1:0,153:29:153:1.00:2
chr10	88768659	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:33:185:0.022:2	./.	./.	./.
chr10	88768725	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,6:24:160:0.038:2	./.	./.	./.
chr10	88769470	.	C	G,T	.	PASS	AC=4,2;AF=0.222,0.111;AN=18;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	0/1:30:31:0.097:2	./.	./.	0/2:30:27:0.200:2	./.	0/1:33:23:0.143:2	0/2:31:22:0.150:2	./.	0/1:33:19:0.211:2	0/1:33:35:0.147:2	./.
chr10	88769498	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,7:34:43:0.163:2	./.	./.	0/1:28,3:32:31:0.097:2	./.	./.	0/1:55,5:33:60:0.083:2	./.
chr10	88769515	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,4:30:41:0.098:2	./.	0/1:27,5:28:32:0.156:2	./.	0/1:38,4:32:42:0.095:2	./.	./.
chr10	88769638	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:187,6:30:193:0.031:2	./.	./.	0/1:184,7:32:191:0.037:2	./.	./.	0/1:183,7:30:190:0.037:2	0/1:185,8:32:193:0.041:2
chr10	88769650	rs183691307	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:32:183:0.022:2
chr10	88769657	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:182,6:31:188:0.032:2	./.	./.	0/1:162,8:31:170:0.047:2	./.	./.	0/1:175,6:30:181:0.033:2	0/1:174,6:31:180:0.033:2
chr10	88782084	rs3802666	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:33:4:1.00:2	0/1:11,4:33:15:0.267:2	0/1:9,9:32:18:0.500:2	0/1:0,14:32:14:1.00:2	0/1:35,16:33:51:0.314:2	0/1:0,38:32:38:1.00:2	0/1:20,16:32:36:0.444:2	0/1:3,5:33:8:0.625:2	0/1:4,11:30:15:0.733:2
chr10	88782100	rs7079587	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,6:33:15:0.400:2	./.	./.	./.	./.	./.	./.
chr10	88782111	rs61857037	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,4:32:15:0.267:2
chr10	88782151	rs3802668	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:32:3:0.667:2	0/1:6,3:31:9:0.333:2	0/1:2,3:31:5:0.600:2	0/1:0,11:32:11:1.00:2	0/1:16,6:31:22:0.273:2	0/1:1,17:32:18:0.944:2	0/1:8,3:33:11:0.273:2	0/1:2,4:28:6:0.667:2	./.
chr10	88820461	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,5:30:192:0.026:2	./.
chr10	88820789	rs9421572	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,7:32:17:0.412:2	./.	./.	./.	./.	./.	0/1:77,65:34:142:0.458:2	./.	./.
chr10	88822488	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:32:123:0.033:2	./.	./.	./.
chr10	88827853	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,4:32:34:0.118:2	./.	./.	./.	./.	./.	./.
chr10	88827881	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,4:31:32:0.125:2	./.	./.	./.	./.	./.	./.
chr10	88827906	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,4:31:28:0.143:2	./.	./.	./.	./.	./.	./.
chr10	88835720	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,4:33:23:0.174:2	./.	./.	./.	./.	./.
chr10	88835773	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,4:31:17:0.235:2	./.	./.	./.	./.	./.
chr10	88835789	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,4:32:17:0.235:2	./.	./.	./.	./.	./.
chr10	88911453	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:159,10:33:169:0.059:2	0/1:115,12:33:127:0.094:2	0/1:133,5:31:138:0.036:2	0/1:123,13:32:136:0.096:2	0/1:152,8:33:160:0.050:2	./.	0/1:151,10:31:161:0.062:2	0/1:189,6:31:195:0.031:2
chr10	88911841	rs77879311	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,28:29:63:0.444:2	./.	0/1:25,33:30:58:0.569:2	0/1:27,20:31:47:0.426:2	./.	./.	./.	0/1:42,34:29:76:0.447:2
chr10	88911936	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,6:24:84:0.071:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:35:127:0.031:2
chr10	88912065	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,13:31:194:0.067:2	./.	./.	./.
chr10	88912087	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,8:32:193:0.041:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,10:31:196:0.051:2
chr10	88912174	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,29:31:200:0.146:2	./.	./.	./.	./.	./.
chr10	88930249	rs11202365	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,47:33:49:0.959:2	0/1:1,60:32:61:0.984:2	0/1:3,8:32:11:0.727:2	0/1:52,42:32:94:0.447:2	0/1:41,27:32:68:0.397:2	./.	./.	0/1:39,48:32:87:0.552:2	0/1:59,53:33:112:0.473:2	./.	./.
chr10	88930676	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:179,21:31:200:0.105:2	./.	0/1:177,23:31:200:0.115:2	./.	./.	./.	./.
chr10	88935742	.	T	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:176,19:33:195:0.097:2	0/1:181,10:32:191:0.052:2	0/1:50,5:32:55:0.091:2	0/1:187,11:32:198:0.056:2	0/1:186,10:31:196:0.051:2	0/1:179,20:31:199:0.101:2	0/1:195,4:36:199:0.020:2	0/1:178,21:31:199:0.106:2	0/1:180,20:33:200:0.100:2	0/1:186,9:31:195:0.046:2	0/1:178,21:30:199:0.106:2
chr10	88935845	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:146,4:31:150:0.027:2	./.	./.	0/1:125,4:31:129:0.031:2	./.	0/1:143,7:31:150:0.047:2	./.	./.	./.	./.	./.
chr10	88939962	rs7081609	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,175:33:175:1.00:2	0/1:0,120:33:120:1.00:2	0/1:28,11:33:39:0.282:2	0/1:0,141:33:141:1.00:2	0/1:120,72:33:192:0.375:2	0/1:0,157:33:157:1.00:2	0/1:2,117:33:119:0.983:2	0/1:4,138:33:142:0.972:2	0/1:120,73:34:193:0.378:2	0/1:1,138:33:139:0.993:2	0/1:2,157:33:159:0.987:2
chr10	88939973	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,5:31:181:0.028:2
chr10	88946889	rs11816168	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:116,77:32:193:0.399:2	./.	./.	0/1:195,4:33:199:0.020:2	./.	./.	./.
chr10	88985865	rs4081196	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,3:34:65:0.046:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	88985906	rs78856879	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,15:28:15:1.00:2	./.	0/1:3,16:29:19:0.842:2	0/1:2,12:27:14:0.857:2	0/1:6,27:29:33:0.818:2	./.	./.	./.
chr10	88985911	rs76809735	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,3:32:36:0.083:2	0/1:1,8:32:9:0.889:2	0/1:0,2:32:2:1.00:2	./.
chr10	88985926	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,3:31:25:0.120:2	./.	./.	./.	./.	./.
chr10	88985962	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,4:30:31:0.129:2	./.	0/1:25,7:29:32:0.219:2	0/1:15,4:29:19:0.211:2	0/1:27,6:29:33:0.182:2	./.	./.	./.
chr10	88988048	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,31:32:147:0.211:2	./.	./.	./.	./.	./.	./.	./.
chr10	88988115	rs200168540	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,15:30:66:0.231:2	0/1:36,10:31:46:0.217:2	0/1:10,4:31:14:0.286:2	0/1:62,15:29:77:0.195:2	0/1:33,4:29:37:0.108:2	./.	./.	0/1:27,23:31:50:0.460:2	0/1:45,18:31:63:0.286:2	./.	./.
chr10	88988216	rs372485168	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,52:31:152:0.342:2	./.	./.	./.	./.	./.
chr10	88988307	rs201394628	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,7:30:108:0.065:2	./.
chr10	88988443	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,4:32:21:0.190:2	0/1:53,7:31:60:0.117:2	./.	0/1:40,7:31:47:0.149:2	./.
chr10	88988555	rs200884340	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:137,8:31:145:0.055:2	0/1:84,10:30:94:0.106:2	./.	0/1:71,5:31:76:0.066:2	./.	0/1:27,4:31:31:0.129:2	0/1:38,8:32:46:0.174:2	0/1:123,9:30:132:0.068:2	0/1:95,9:32:104:0.087:2	0/1:56,4:30:60:0.067:2	./.
chr10	88992622	rs200484233	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:10,35:32:45:0.778:2	0/1:5,25:32:30:0.833:2	0/1:21,3:30:24:0.125:2	./.	./.	./.	./.	0/1:32,6:33:38:0.158:2	./.	./.	0/1:119,34:32:157:0.222:2
chr10	88992641	rs145500179	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,4:32:33:0.121:2	./.	0/1:1,19:30:20:0.950:2	0/1:1,150:31:151:0.993:2	0/1:9,148:30:157:0.943:2	0/1:2,125:30:127:0.984:2	0/1:49,74:31:123:0.602:2	./.	0/1:1,184:31:185:0.995:2	0/1:5,142:31:147:0.966:2	0/1:1,125:30:126:0.992:2
chr10	88992644	rs199899922	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:4,25:32:29:0.862:2	0/1:1,21:32:22:0.955:2	./.	./.	./.	./.	./.	0/1:12,8:32:20:0.400:2	./.	./.	./.
chr10	88992687	rs200976015	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,9:31:64:0.141:2	0/1:15,14:33:29:0.483:2	./.	0/1:60,5:30:65:0.077:2	./.
chr10	88992696	rs201798557	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,10:32:51:0.196:2	0/1:13,12:33:25:0.480:2	./.	0/1:52,8:32:60:0.133:2	./.
chr10	88992705	rs202126908	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,5:32:74:0.068:2	./.	./.
chr10	88994307	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,11:32:168:0.065:2	./.	0/1:172,20:32:192:0.104:2	./.	./.	./.
chr10	88994452	rs199530790	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:15,4:28:19:0.211:2	0/1:1,5:32:6:0.833:2	./.	0/1:7,3:30:10:0.300:2	./.	0/1:3,7:30:10:0.700:2	./.	0/1:21,4:30:25:0.160:2	./.	./.	./.
chr10	89118125	rs77153116	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:63,33:30:96:0.344:2	0/1:101,96:29:197:0.487:2	0/1:138,59:30:197:0.299:2	0/1:53,139:30:192:0.724:2	0/1:104,91:30:195:0.467:2	./.	0/1:151,47:31:198:0.237:2	0/1:151,45:31:196:0.230:2	0/1:98,95:31:193:0.492:2
chr10	89120266	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,17:32:121:0.140:2	./.	./.	./.	./.	./.	./.	./.
chr10	89120333	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:11,3:30:14:0.214:2	./.	0/1:17,5:23:22:0.227:2	./.	./.	./.	0/1:22,4:30:26:0.154:2	./.	./.	./.
chr10	89120661	rs139769515	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,15:32:35:0.429:2	0/1:30,18:33:48:0.375:2	./.	0/1:29,12:31:41:0.293:2	./.
chr10	89120773	rs200025867	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,4:31:92:0.043:2	./.	0/1:38,7:30:45:0.156:2	0/1:45,16:31:61:0.262:2	0/1:154,14:29:168:0.083:2	0/1:73,10:32:83:0.120:2	0/1:66,5:30:71:0.070:2	0/1:68,7:31:75:0.093:2
chr10	89124767	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,5:31:123:0.041:2	./.	./.	./.
chr10	89124840	rs200082791	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	89124859	rs201741914	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,12:30:14:0.857:2	./.	0/1:1,9:30:10:0.900:2	./.	./.	0/1:1,10:30:11:0.909:2	./.	0/1:0,19:28:19:1.00:2
chr10	89124862	rs200907148	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:31:5:0.800:2	0/1:0,5:32:5:1.00:2	./.	./.	0/1:3,3:31:6:0.500:2	./.	./.	./.	./.	./.	./.
chr10	89124905	rs147808443	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,33:32:50:0.660:2	0/1:6,75:32:81:0.926:2	./.	0/1:39,35:32:74:0.473:2	./.
chr10	89124914	rs149114452	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,29:32:48:0.604:2	0/1:6,69:32:75:0.920:2	./.	0/1:31,35:33:66:0.530:2	./.
chr10	89312005	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,6:32:189:0.032:2	./.	./.
chr10	89468953	rs17173698	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,10:31:24:0.417:2	./.
chr10	89514501	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,4:30:70:0.057:2	./.	./.	./.	./.	./.	./.	./.
chr10	89544268	rs147215571	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:33:131:0.031:2	./.	./.	./.
chr10	89544320	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:87,4:33:91:0.044:2	./.	./.	./.	./.	./.	./.
chr10	89544338	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,4:31:102:0.039:2	./.	./.	./.	./.	./.	./.
chr10	89622081	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:31:89:0.045:2
chr10	89622936	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,54:27:113:0.478:2	./.	./.
chr10	89622941	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:31:115:0.035:2	./.	./.
chr10	89717695	rs190070312	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,45:32:97:0.464:2	./.	./.	./.	./.	./.	./.
chr10	90122332	rs188639368	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,43:32:87:0.494:2	./.	./.	./.	./.	./.	./.
chr10	90342837	rs2296545	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,31:29:60:0.517:2	0/1:14,18:29:32:0.563:2	0/1:5,12:30:17:0.706:2	0/1:55,55:30:110:0.500:2	./.	./.	0/1:54,52:29:106:0.491:2	0/1:3,101:29:104:0.971:2	./.	0/1:43,30:30:73:0.411:2	./.
chr10	90353737	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.
chr10	90356568	rs77091298	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:30:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	90356598	rs1409136	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:29:23:1.00:2	0/1:0,7:27:7:1.00:2	0/1:1,4:29:5:0.800:2	0/1:2,17:29:19:0.895:2	0/1:6,6:30:12:0.500:2	0/1:0,16:28:16:1.00:2	0/1:7,6:29:13:0.462:2	0/1:0,16:28:16:1.00:2	0/1:13,13:30:26:0.500:2	0/1:8,7:30:15:0.467:2	0/1:12,17:28:29:0.586:2
chr10	90429652	rs814628	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:52,50:32:102:0.490:2	0/1:28,21:32:49:0.429:2	./.	./.	0/1:56,56:32:113:0.500:2	0/1:65,42:32:107:0.393:2	./.	./.	0/1:51,55:33:106:0.519:2	./.	./.
chr10	90433345	rs6586145	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,26:32:95:0.274:2	./.	./.	./.	./.	./.	./.	./.
chr10	90433479	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:31:93:0.043:2	./.	./.	./.	./.	./.
chr10	90438207	rs1228187	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:51,63:33:114:0.553:2	0/1:24,27:33:51:0.529:2	./.	./.	0/1:67,71:33:138:0.514:2	0/1:56,51:32:107:0.477:2	./.	./.	0/1:2,117:34:119:0.983:2	./.	./.
chr10	90490921	rs412227	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:34,24:33:58:0.414:2	0/1:20,10:33:30:0.333:2	./.	./.	0/1:21,33:32:54:0.611:2	0/1:42,38:32:80:0.475:2	0/1:21,38:33:59:0.644:2	0/1:48,28:32:76:0.368:2	0/1:32,34:34:66:0.515:2	0/1:33,22:33:55:0.400:2	./.
chr10	90491938	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,4:32:84:0.048:2	./.	./.	./.	./.	./.	./.	./.
chr10	90503075	rs390152	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,17:32:40:0.425:2	0/1:9,19:32:28:0.679:2	./.	./.	0/1:17,17:32:34:0.500:2	0/1:19,36:32:55:0.655:2	0/1:23,24:32:47:0.511:2	0/1:23,28:31:51:0.549:2	0/1:31,25:33:56:0.446:2	0/1:33,24:32:57:0.421:2	./.
chr10	90512306	rs1214464	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,29:31:53:0.547:2	0/1:18,17:30:35:0.486:2	./.	./.	0/1:29,19:32:48:0.396:2	0/1:19,34:30:53:0.642:2	0/1:29,15:31:44:0.341:2	0/1:42,27:30:69:0.391:2	0/1:35,35:31:70:0.500:2	0/1:36,30:31:66:0.455:2	./.
chr10	90524237	rs430517	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:34,22:33:56:0.393:2	0/1:14,20:33:34:0.588:2	./.	./.	0/1:27,25:30:52:0.481:2	0/1:41,26:32:67:0.388:2	0/1:41,20:32:61:0.328:2	0/1:30,25:31:55:0.455:2	0/1:49,39:33:88:0.443:2	0/1:43,26:32:69:0.377:2	./.
chr10	90530660	rs10788611	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:41,16:33:57:0.281:2	0/1:21,16:32:37:0.432:2	./.	./.	0/1:24,20:30:44:0.455:2	0/1:21,18:32:39:0.462:2	./.	./.	0/1:24,27:32:51:0.529:2	0/1:34,21:31:55:0.382:2	./.
chr10	90530683	rs114737713	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,29:31:52:0.558:2	./.	./.	./.	./.	./.
chr10	90537942	rs11202851	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:61,44:32:105:0.419:2	0/1:32,29:32:61:0.475:2	./.	./.	./.	./.	0/1:48,42:33:90:0.467:2	0/1:53,45:32:99:0.459:2	./.	./.	./.
chr10	90574957	rs61740492	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,10:33:25:0.400:2	./.	./.	./.
chr10	90580144	rs10788615	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:29,31:32:60:0.517:2	0/1:26,15:32:41:0.366:2	./.	./.	0/1:51,44:32:95:0.463:2	./.	./.	./.	./.	0/1:36,31:32:67:0.463:2	./.
chr10	90583092	rs2304804	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,22:30:72:0.306:2	./.	./.	./.	./.	./.	./.
chr10	90585819	rs7893917	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:12,18:32:30:0.600:2	0/1:15,12:30:27:0.444:2	./.	./.	0/1:8,12:32:20:0.600:2	./.	0/1:13,11:33:24:0.458:2	0/1:25,25:31:50:0.500:2	./.	0/1:23,17:31:40:0.425:2	./.
chr10	90665355	rs17114071	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,38:31:84:0.452:2	./.	./.	./.	0/1:34,33:31:67:0.493:2	0/1:42,43:32:86:0.506:2
chr10	90673024	rs12254856	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,4:30:13:0.308:2	0/1:54,54:30:108:0.500:2	./.	./.	./.	./.	./.	./.	0/1:47,53:31:100:0.530:2
chr10	90673047	rs34270879	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,40:31:109:0.367:2	./.
chr10	90673116	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,6:34:143:0.042:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	90695068	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,5:29:86:0.058:2	./.	./.	./.	./.	./.	./.	./.
chr10	90697896	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:32:184:0.022:2	./.	./.	./.	./.
chr10	90703590	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,4:34:62:0.065:2	./.	./.	./.	./.	./.	./.
chr10	90770584	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,4:32:118:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr10	90771829	rs2234978	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,41:33:41:1.00:2	0/1:0,21:32:21:1.00:2	./.	0/1:0,41:33:41:1.00:2	0/1:7,11:31:18:0.611:2	0/1:0,44:32:44:1.00:2	0/1:1,28:32:29:0.966:2	0/1:15,14:33:29:0.483:2	0/1:22,29:33:51:0.569:2	0/1:18,19:33:37:0.514:2	0/1:0,69:33:69:1.00:2
chr10	90966546	rs4078488	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,66:32:142:0.465:2	./.	./.	0/1:57,34:30:91:0.374:2	./.
chr10	90966828	rs45579235	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,29:31:72:0.403:2	./.	./.	./.	./.	./.	./.
chr10	90966996	rs10887932	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,22:33:48:0.458:2	./.	./.	0/1:25,11:33:36:0.306:2	./.
chr10	91007339	rs1051339	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:14,16:31:30:0.533:2	0/1:4,13:32:17:0.765:2	./.	./.	0/1:13,14:31:27:0.519:2	./.	./.	./.	./.	0/1:20,20:31:40:0.500:2	./.
chr10	91007360	rs1051338	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,12:32:30:0.400:2	0/1:0,19:32:19:1.00:2	./.	0/1:19,17:33:36:0.472:2	0/1:14,18:32:32:0.563:2	0/1:19,6:33:25:0.240:2
chr10	91065949	rs17468739	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,29:30:60:0.483:2	./.	./.	./.
chr10	91066075	rs2070845	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,3:33:18:0.167:2	0/1:16,24:32:40:0.600:2	./.	./.	./.
chr10	91066460	rs954439	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:31:8:0.375:2	./.	./.	0/1:30,29:29:59:0.492:2	0/1:22,22:30:44:0.500:2	0/1:0,74:29:74:1.00:2	./.	0/1:24,29:31:53:0.547:2	0/1:36,31:29:67:0.463:2
chr10	91066769	rs1727	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,29:33:60:0.483:2	0/1:18,15:32:33:0.455:2	0/1:5,4:33:9:0.444:2	0/1:29,21:33:50:0.420:2	0/1:28,23:31:51:0.451:2	0/1:23,22:32:45:0.489:2	0/1:12,23:32:35:0.657:2	0/1:28,25:33:53:0.472:2	0/1:40,26:34:66:0.394:2	0/1:21,22:33:43:0.512:2	0/1:0,65:33:65:1.00:2
chr10	91067047	rs138979563	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,19:32:35:0.543:2	./.	./.	./.	./.
chr10	91099630	rs3780878	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,17:30:46:0.370:2	0/1:30,19:27:49:0.388:2	./.	./.	./.
chr10	91099657	rs17119665	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,23:30:52:0.442:2	./.	./.	./.	./.	./.
chr10	91137848	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:31:109:0.037:2	./.	./.	./.	./.	./.
chr10	91143090	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,4:30:64:0.063:2	./.	./.	./.	./.	./.	./.
chr10	91143208	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:33:35:0.114:2	./.	./.	./.
chr10	91143222	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:33:35:0.114:2	./.	./.	./.
chr10	91143529	rs304494	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,28:31:52:0.538:2	0/1:23,22:30:45:0.489:2	0/1:0,70:31:70:1.00:2	./.	0/1:37,26:32:63:0.413:2	0/1:32,48:31:80:0.600:2
chr10	91143608	rs73369750	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,13:30:30:0.433:2	./.	./.	./.	./.	./.
chr10	91162182	rs41284944	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,27:30:68:0.397:2	./.	./.	./.	./.	./.
chr10	91162497	rs303211	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,117:33:118:0.992:2	0/1:1,60:33:61:0.984:2	0/1:0,17:32:17:1.00:2	0/1:0,142:33:143:1.00:2	0/1:46,45:32:91:0.495:2	0/1:0,114:32:114:1.00:2	0/1:1,79:32:80:0.988:2	0/1:0,128:32:128:1.00:2	0/1:1,155:33:156:0.994:2	0/1:54,46:32:101:0.460:2	0/1:0,143:33:143:1.00:2
chr10	91162677	rs303210	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	./.	./.	./.	./.	./.	0/1:16,12:31:28:0.429:2	0/1:20,28:31:48:0.583:2
chr10	91178000	rs304448	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:31:8:0.750:2	./.	./.	0/1:69,57:31:126:0.452:2	0/1:53,57:32:110:0.518:2	0/1:75,53:32:128:0.414:2	./.	0/1:45,59:31:104:0.567:2	0/1:98,44:32:142:0.310:2
chr10	91344169	rs1063943	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,50:31:51:0.980:2	./.	./.	./.	./.
chr10	91352966	rs2296616	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,60:32:133:0.451:2	0/1:36,50:31:86:0.581:2	0/1:9,8:32:17:0.471:2	0/1:92,98:32:190:0.516:2	0/1:94,97:31:191:0.508:2	0/1:100,93:31:193:0.482:2	0/1:1,195:32:196:0.995:2	./.	0/1:0,152:32:152:1.00:2	0/1:84,67:32:151:0.444:2	0/1:2,173:32:175:0.989:2
chr10	91371571	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:34:133:0.030:2	./.
chr10	91404448	rs11185826	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:34:4:0.500:2	0/1:2,4:27:6:0.667:2	./.	./.	./.	0/1:5,6:30:11:0.545:2	0/1:5,3:32:8:0.375:2	./.	0/1:1,4:33:5:0.800:2	./.	./.
chr10	91468925	rs1129777	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,11:32:31:0.355:2	./.	./.	./.	0/1:24,28:33:52:0.538:2	./.	0/1:52,37:32:89:0.416:2
chr10	91470834	rs1048057	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,30:28:75:0.400:2	0/1:16,18:28:34:0.529:2	./.	./.	./.	0/1:42,30:29:72:0.417:2	0/1:30,19:29:50:0.388:2	./.	./.	./.	./.
chr10	91479211	rs17484219	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,16:31:24:0.667:2	0/1:14,19:30:33:0.576:2	./.	./.	./.	0/1:14,11:31:25:0.440:2	0/1:36,28:32:64:0.438:2
chr10	91484780	rs8181361	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:36,10:31:46:0.217:2	0/1:10,6:33:16:0.375:2	0/1:2,3:31:5:0.600:2	./.	./.	0/1:16,16:31:32:0.500:2	0/1:15,16:32:31:0.516:2	./.	./.	./.	./.
chr10	91487649	rs12572012	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	0/1:36,18:31:54:0.333:2	./.	./.	./.	0/1:49,46:33:95:0.484:2	./.	0/1:58,42:32:100:0.420:2
chr10	91488979	rs3758388	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,7:32:19:0.368:2	./.	0/1:37,25:32:62:0.403:2	./.	./.	./.	0/1:58,53:33:111:0.477:2	./.	0/1:105,88:32:193:0.456:2
chr10	91497631	rs1062465	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:27,42:31:69:0.609:2	0/1:16,21:32:37:0.568:2	0/1:1,2:32:3:0.667:2	./.	./.	0/1:34,35:31:69:0.507:2	0/1:19,19:30:38:0.500:2	./.	./.	./.	./.
chr10	91498127	rs1886996	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:30,33:30:63:0.524:2	0/1:9,8:28:17:0.471:2	0/1:0,4:30:4:1.00:2	./.	0/1:0,44:29:44:1.00:2	0/1:0,38:29:38:1.00:2	0/1:21,18:30:39:0.462:2	./.	0/1:51,40:30:91:0.440:2	0/1:23,27:30:50:0.540:2	0/1:0,92:30:93:1.00:2
chr10	91498254	rs1886997	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:20,26:32:46:0.565:2	0/1:18,14:32:32:0.438:2	0/1:1,3:32:4:0.750:2	./.	./.	0/1:28,37:32:65:0.569:2	0/1:15,10:31:25:0.400:2	./.	./.	./.	./.
chr10	91498318	rs1886998	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,13:33:26:0.500:2	0/1:10,5:32:15:0.333:2	./.	./.	./.	0/1:13,10:32:23:0.435:2	./.	./.	./.	./.	./.
chr10	91503660	rs1126480	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:42,38:33:80:0.475:2	0/1:30,14:32:44:0.318:2	0/1:3,4:33:7:0.571:2	./.	./.	0/1:37,29:33:66:0.439:2	0/1:26,14:34:40:0.350:2	./.	./.	./.	./.
chr10	91522548	rs34354493	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,11:31:31:0.355:2	0/1:13,21:32:34:0.618:2	./.	./.	./.	0/1:18,19:33:37:0.514:2	0/1:38,25:33:63:0.397:2
chr10	91532583	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:32:167:0.024:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	92503619	rs3740048	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:29,32:33:62:0.525:2	0/1:14,8:33:22:0.364:2	./.	./.	./.	./.	./.	./.	./.	0/1:14,27:32:41:0.659:2	./.
chr10	92631778	rs11544145	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,82:29:83:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr10	92635826	rs147884661	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,7:29:44:0.159:2	./.	./.	./.	./.	./.	./.
chr10	93170250	rs7081569	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.
chr10	93221077	rs7920604	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,60:33:96:0.625:2	./.	./.
chr10	93390149	rs1044563	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,10:33:29:0.345:2	./.	./.
chr10	93579306	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:141,4:32:145:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr10	93601163	rs150996069	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,29:28:88:0.330:2	./.	./.	./.	./.	./.
chr10	93608142	rs3758499	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,29:31:51:0.569:2	0/1:32,27:32:59:0.458:2	./.	./.	0/1:13,19:32:32:0.594:2	./.
chr10	93668051	rs80269321	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,20:32:43:0.465:2	./.	./.
chr10	93668110	rs1107947	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,12:29:39:0.308:2	./.	./.	0/1:26,22:31:48:0.458:2	0/1:18,24:32:42:0.571:2	0/1:35,17:29:52:0.327:2	./.
chr10	93749103	rs74490737	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,38:33:72:0.528:2	./.	./.
chr10	93787052	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,28:33:67:0.418:2	./.	./.
chr10	93841227	rs2676811	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:29:49:1.00:2	0/1:0,31:29:31:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,40:30:40:1.00:2	0/1:1,67:30:68:0.985:2	0/1:0,58:29:58:1.00:2	0/1:0,85:29:85:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,44:30:44:1.00:2
chr10	93870839	rs200566432	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,13:14:154:0.086:2
chr10	93999850	rs3824734	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,4:30:4:1.00:2	./.	./.	0/1:0,5:33:5:1.00:2	./.	0/1:0,9:31:9:1.00:2	0/1:6,3:29:9:0.333:2	0/1:0,10:31:10:1.00:2	0/1:0,7:33:7:1.00:2	0/1:1,6:31:7:0.857:2	0/1:0,4:33:4:1.00:2
chr10	94223511	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:146,6:29:152:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr10	94390010	rs200035618	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,7:29:20:0.350:2	./.	./.	./.	./.	./.
chr10	94393483	rs116840343	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,39:31:85:0.459:2	./.	./.	./.	./.	./.	./.	./.
chr10	94397295	rs116942055	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:32:52:0.077:2	./.	./.	./.	./.
chr10	94405202	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	94413508	rs34417963	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,48:29:110:0.440:2	./.	./.	./.	./.	./.	./.	./.
chr10	94594565	rs2490741	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,35:32:68:0.515:2	0/1:28,26:32:56:0.481:2	0/1:0,9:30:9:1.00:2	0/1:55,72:31:127:0.567:2	0/1:3,60:31:63:0.952:2	0/1:0,98:30:98:1.00:2	0/1:0,81:31:81:1.00:2	./.	0/1:0,105:31:105:1.00:2	0/1:0,89:30:89:1.00:2	./.
chr10	94675653	rs369735626	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,3:31:34:0.088:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	94679782	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,24:33:86:0.279:2	./.	./.
chr10	94695555	rs1326330	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,15:31:27:0.556:2	0/1:4,6:31:10:0.600:2	./.	./.	0/1:15,6:31:21:0.286:2	0/1:19,8:30:27:0.296:2	./.	./.	0/1:0,23:30:23:1.00:2	0/1:10,7:29:17:0.412:2	./.
chr10	94695617	rs1326331	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,36:32:36:1.00:2	0/1:0,18:32:18:1.00:2	./.	0/1:0,35:32:35:1.00:2	0/1:22,7:31:29:0.241:2	0/1:31,15:31:46:0.326:2	0/1:25,14:32:39:0.359:2	0/1:0,43:31:43:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,44:32:44:1.00:2
chr10	94714427	rs11187225	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,5:32:10:0.500:2	./.	./.	0/1:11,10:33:21:0.476:2	./.
chr10	94822594	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:29:6:0.500:2	./.	./.	./.	./.
chr10	94822686	rs55843714	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:10,12:31:22:0.545:2	0/1:5,6:31:11:0.545:2	0/1:0,3:30:3:1.00:2	./.	0/1:0,37:31:37:1.00:2	0/1:1,25:30:26:0.962:2	./.	./.	0/1:14,5:32:19:0.263:2	0/1:6,6:31:12:0.500:2	0/1:3,6:32:9:0.667:2
chr10	94824166	rs11187265	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,37:32:86:0.430:2	./.	./.	0/1:27,33:32:60:0.550:2	./.
chr10	95072906	rs787666	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,138:32:139:0.993:2	0/1:0,62:31:62:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,120:32:120:1.00:2	0/1:0,142:32:142:1.00:2	0/1:77,64:32:141:0.454:2	0/1:0,133:32:133:1.00:2	0/1:0,159:32:159:1.00:2	0/1:0,151:33:151:1.00:2	./.	0/1:0,138:32:139:1.00:2
chr10	95082882	rs34048939	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:102,62:32:164:0.378:2	0/1:36,46:32:82:0.561:2	0/1:26,7:31:33:0.212:2	0/1:101,63:32:164:0.384:2	./.	0/1:97,64:31:161:0.398:2	./.	./.	./.	./.	./.
chr10	95082894	rs35527060	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:99,62:32:161:0.385:2	0/1:38,42:32:80:0.525:2	0/1:23,6:31:29:0.207:2	0/1:84,60:32:144:0.417:2	./.	0/1:90,58:31:149:0.392:2	./.	./.	./.	./.	./.
chr10	95083039	rs11594445	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,78:32:80:0.975:2	./.	0/1:64,39:32:103:0.379:2	./.	./.	./.	./.
chr10	95095792	rs79155397	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:39,23:31:62:0.371:2	0/1:18,10:31:28:0.357:2	./.	0/1:30,25:31:55:0.455:2	./.	./.	./.	0/1:35,40:32:75:0.533:2	0/1:49,43:32:92:0.467:2	./.	./.
chr10	95099965	rs111875089	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,14:31:23:0.609:2	./.	./.	./.	./.	./.
chr10	95111005	rs35669278	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:35,27:31:63:0.435:2	0/1:10,16:32:26:0.615:2	./.	0/1:49,45:33:94:0.479:2	./.	./.	./.	0/1:37,63:32:100:0.630:2	0/1:47,46:33:93:0.495:2	./.	./.
chr10	95121271	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:148,4:32:152:0.026:2	./.	./.	./.	./.	./.	./.
chr10	95132729	rs74150216	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,100:31:194:0.515:2	./.	./.
chr10	95162660	rs41290206	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:59,47:32:106:0.443:2	0/1:50,20:32:70:0.286:2	./.	0/1:72,28:32:100:0.280:2	./.	./.	./.	0/1:69,39:32:108:0.361:2	./.	./.	./.
chr10	95216623	rs701882	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,3:32:3:1.00:2	./.	0/1:9,7:32:16:0.438:2	0/1:0,18:32:18:1.00:2	./.	0/1:0,20:34:20:1.00:2	0/1:15,8:33:23:0.348:2	0/1:17,13:34:30:0.433:2	0/1:17,18:33:35:0.514:2	0/1:0,28:34:28:1.00:2
chr10	95259979	rs3740370	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,5:31:12:0.417:2	./.	0/1:9,12:33:21:0.571:2	./.	0/1:0,18:33:18:1.00:2	./.	0/1:10,13:34:23:0.565:2
chr10	95262890	rs61865305	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,8:32:24:0.333:2	./.	./.	./.	./.	./.	./.
chr10	95262967	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:31:95:0.042:2
chr10	95262981	rs7080916	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:30:60:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,90:30:90:1.00:2	0/1:0,55:29:55:1.00:2	0/1:0,86:29:86:1.00:2	0/1:0,69:29:69:1.00:2	./.	0/1:0,81:30:81:1.00:2	0/1:0,80:29:80:1.00:2	0/1:0,97:28:97:1.00:2
chr10	95276718	rs7072484	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,25:31:44:0.568:2	./.	0/1:22,28:32:50:0.560:2
chr10	95278683	rs75139274	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,9:32:28:0.321:2	./.	0/1:88,57:32:145:0.393:2	./.	./.	./.	./.	./.	./.
chr10	95278721	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,4:26:33:0.121:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	95279506	rs2293277	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:33:27:1.00:2	0/1:0,26:32:26:1.00:2	0/1:2,3:33:5:0.600:2	0/1:0,35:32:35:1.00:2	0/1:0,22:31:22:1.00:2	0/1:36,17:32:53:0.321:2	0/1:0,27:33:27:1.00:2	0/1:2,27:31:29:0.931:2	0/1:16,21:33:37:0.568:2	0/1:1,27:33:28:0.964:2	0/1:28,36:32:64:0.563:2
chr10	95326676	rs61866610	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,38:31:56:0.679:2	./.	./.	./.	./.	./.
chr10	95347070	rs138801183	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,12:33:102:0.118:2	./.
chr10	95372734	rs1131978	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,15:29:35:0.429:2	0/1:8,9:30:17:0.529:2	0/1:16,15:29:31:0.484:2	./.	./.	./.	./.	0/1:7,16:30:23:0.696:2
chr10	95372764	rs12781149	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,9:31:23:0.391:2	./.	./.	./.	./.	./.	0/1:10,20:29:30:0.667:2
chr10	95381773	rs701865	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,5:32:8:0.625:2	0/1:40,20:32:61:0.333:2	0/1:33,17:31:50:0.340:2	0/1:32,21:32:53:0.396:2	0/1:36,30:32:66:0.455:2	./.	0/1:46,39:33:85:0.459:2	./.	0/1:37,31:31:69:0.456:2
chr10	95389041	rs714550	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.	0/1:51,23:33:74:0.311:2	./.	0/1:46,37:33:83:0.446:2	./.	0/1:93,46:34:139:0.331:2	./.	0/1:61,46:33:107:0.430:2
chr10	95389083	rs714549	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	0/1:33,16:32:49:0.327:2	./.	0/1:45,35:32:80:0.438:2	./.	0/1:72,39:32:112:0.351:2	./.	0/1:45,36:32:81:0.444:2
chr10	95395364	rs3737228	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,33:30:73:0.452:2	0/1:32,26:30:59:0.448:2	0/1:40,33:30:73:0.452:2	0/1:28,39:30:67:0.582:2	./.	./.	./.	./.
chr10	95441272	rs11187583	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,26:32:94:0.277:2	./.	./.	./.	./.	0/1:0,41:32:41:1.00:2	./.	0/1:51,29:32:81:0.363:2
chr10	95454681	rs2275438	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,24:34:25:0.960:2	0/1:0,21:32:21:1.00:2	0/1:2,3:34:5:0.600:2	./.	0/1:14,3:32:17:0.176:2	./.	0/1:0,9:32:9:1.00:2	0/1:16,11:32:27:0.407:2	./.	0/1:0,23:34:23:1.00:2	0/1:28,20:34:48:0.417:2
chr10	95458141	rs11187597	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,43:30:43:1.00:2	0/1:0,34:30:34:1.00:2	0/1:1,4:31:5:0.800:2	./.	0/1:15,24:30:39:0.615:2	./.	0/1:0,34:30:34:1.00:2	0/1:29,17:30:46:0.370:2	./.	0/1:0,36:30:36:1.00:2	0/1:37,33:30:70:0.471:2
chr10	95459817	rs726817	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,22:30:23:0.957:2	0/1:0,21:31:21:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,57:31:57:1.00:2	0/1:22,13:30:35:0.371:2	./.	0/1:0,29:31:29:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,39:31:39:1.00:2	0/1:6,54:31:60:0.900:2	0/1:0,40:31:40:1.00:2
chr10	95518093	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,19:33:36:0.528:2
chr10	95552653	rs1111820	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:28:44:1.00:2	0/1:0,21:28:21:1.00:2	0/1:0,7:28:7:1.00:2	0/1:19,13:27:32:0.406:2	0/1:0,33:29:33:1.00:2	0/1:0,40:29:40:1.00:2	0/1:0,42:28:42:1.00:2	0/1:0,37:29:37:1.00:2	0/1:0,37:29:37:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,43:27:43:1.00:2
chr10	95661034	rs192237765	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,46:31:85:0.541:2	./.	./.	./.	./.
chr10	95718600	rs11815169	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:106,77:31:183:0.421:2	./.	0/1:119,66:29:185:0.357:2	./.	0/1:107,71:29:178:0.399:2	0/1:103,83:31:186:0.446:2	0/1:109,78:31:187:0.417:2	0/1:109,70:29:179:0.391:2
chr10	95718709	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:33:196:0.020:2	./.	./.	./.	./.
chr10	95718760	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:31:89:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	95718790	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	95718794	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:33:92:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	95718884	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,7:24:153:0.046:2	0/1:112,5:27:117:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,6:29:168:0.036:2
chr10	95718949	rs11813252	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,52:31:117:0.444:2	./.	0/1:70,57:31:127:0.449:2	./.	./.	./.	./.	./.
chr10	95718961	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:32:101:0.040:2	./.	./.	./.
chr10	95718989	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,6:27:87:0.069:2	./.	./.	0/1:79,6:26:85:0.071:2	./.
chr10	95719110	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:178,8:30:186:0.043:2	0/1:187,5:34:192:0.026:2	./.	0/1:191,6:32:197:0.030:2	./.	./.	./.
chr10	95719142	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:33:199:0.020:2	./.	./.	./.	0/1:186,4:33:190:0.021:2
chr10	95719201	rs144783321	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:106,92:32:198:0.465:2	./.	0/1:100,82:33:182:0.451:2	./.	./.	./.	./.	./.
chr10	95720112	rs144462822	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,34:31:77:0.442:2	./.	0/1:37,35:31:72:0.486:2	./.	./.	./.	./.	./.
chr10	95720247	rs187242740	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,88:32:190:0.463:2	./.	0/1:96,101:31:197:0.513:2	./.	./.	./.	./.	./.
chr10	95720412	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:29:94:0.043:2	./.	./.	./.	./.
chr10	95720415	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:30:98:0.041:2	./.	./.	./.	./.
chr10	95720429	rs111525022	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,63:33:144:0.438:2	./.	0/1:84,75:33:159:0.472:2	./.	./.	./.	./.	./.
chr10	95720490	rs12570608	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,60:30:147:0.408:2	0/1:84,59:31:144:0.413:2	0/1:77,47:29:124:0.379:2	0/1:86,89:30:175:0.509:2
chr10	95720501	rs12571819	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,56:29:136:0.412:2	0/1:85,59:29:144:0.410:2	0/1:74,50:29:125:0.403:2	0/1:90,90:29:180:0.500:2
chr10	95720515	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,5:31:102:0.049:2	./.	./.	./.	./.	./.	./.
chr10	95720516	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:99,5:30:105:0.048:2	./.	./.	./.	./.	./.	./.
chr10	95720613	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:187,4:32:191:0.021:2	0/1:185,4:32:189:0.021:2	./.	0/1:186,4:33:191:0.021:2	0/1:183,4:33:187:0.021:2	./.	./.	./.
chr10	95720767	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:133,4:31:137:0.029:2	0/1:123,4:30:127:0.031:2	./.	0/1:132,4:31:136:0.029:2	./.	./.	./.	./.
chr10	95720824	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:138,4:33:142:0.028:2	./.	./.	./.	./.	./.	./.
chr10	95720825	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:138,4:33:142:0.028:2	./.	./.	./.	./.	./.	./.
chr10	95720906	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:175,6:29:181:0.033:2	./.	0/1:152,7:31:159:0.044:2	./.	./.	./.	./.
chr10	95721077	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:32:177:0.023:2	./.	./.	./.
chr10	95791613	rs17109671	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:83,47:30:130:0.362:2	0/1:37,43:30:80:0.538:2	./.	0/1:89,68:30:157:0.433:2	0/1:52,42:31:94:0.447:2	./.	0/1:76,55:30:131:0.420:2	0/1:63,71:30:134:0.530:2	0/1:99,64:31:163:0.393:2	./.	./.
chr10	95791763	rs17109674	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,31:32:70:0.443:2	0/1:25,15:32:40:0.375:2	./.	0/1:53,26:31:79:0.329:2	0/1:21,26:31:47:0.553:2	./.	0/1:22,22:29:44:0.500:2	0/1:20,26:30:46:0.565:2	0/1:39,41:32:80:0.513:2	./.	./.
chr10	95892129	rs17508082	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:12,30:29:42:0.714:2	0/1:7,7:29:14:0.500:2	./.	./.	./.	./.	0/1:15,17:28:32:0.531:2	./.	0/1:25,22:29:47:0.468:2	./.	./.
chr10	95931087	rs17417407	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:74,77:32:151:0.510:2	0/1:51,53:32:104:0.510:2	0/1:15,8:30:23:0.348:2	./.	./.	./.	./.	./.	0/1:123,68:32:191:0.356:2	0/1:0,119:32:119:1.00:2	./.
chr10	96025697	rs41291134	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,27:32:62:0.435:2	./.	./.	./.	./.	./.
chr10	96039597	rs2274224	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,33:31:89:0.371:2	0/1:20,13:32:33:0.394:2	0/1:4,4:33:8:0.500:2	0/1:41,32:30:73:0.438:2	0/1:46,37:29:83:0.446:2	0/1:45,38:31:83:0.458:2	0/1:1,76:31:77:0.987:2	0/1:40,74:31:114:0.649:2	0/1:1,112:33:113:0.991:2	0/1:57,20:29:77:0.260:2	./.
chr10	96039606	rs61732525	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,49:33:112:0.438:2	./.	./.
chr10	96058298	rs3765524	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:34,42:31:76:0.553:2	0/1:18,18:31:36:0.500:2	./.	./.	0/1:40,24:30:64:0.375:2	0/1:28,31:30:59:0.525:2	0/1:0,71:31:71:1.00:2	./.	0/1:29,32:32:61:0.525:2	0/1:31,40:31:71:0.563:2	./.
chr10	96064385	rs184591536	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,20:32:58:0.345:2	./.	./.	./.	./.	./.	./.	./.
chr10	96066341	rs2274223	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:35,29:30:64:0.453:2	0/1:23,22:29:45:0.489:2	0/1:3,4:30:7:0.571:2	./.	0/1:48,40:30:88:0.455:2	0/1:66,62:29:128:0.484:2	0/1:8,108:30:116:0.931:2	./.	0/1:55,45:32:101:0.450:2	0/1:62,52:30:114:0.456:2	./.
chr10	96076495	rs942676	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,13:32:36:0.361:2	./.	0/1:18,32:32:50:0.640:2	./.	0/1:34,27:32:61:0.443:2	./.	./.	./.
chr10	96087728	rs3203713	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,55:31:112:0.491:2	./.	0/1:54,67:32:121:0.554:2	./.	./.	0/1:91,78:32:169:0.462:2	./.
chr10	96098373	rs17517578	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,22:27:55:0.400:2	./.	0/1:41,41:29:82:0.500:2	./.	./.	0/1:42,18:30:60:0.300:2	./.
chr10	96100119	rs3740359	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:94,79:31:173:0.457:2	0/1:61,50:32:111:0.450:2	./.	./.	./.	./.	0/1:86,71:31:157:0.452:2	./.	0/1:103,67:31:170:0.394:2	./.	./.
chr10	96100270	rs72814643	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,19:25:34:0.559:2
chr10	96104665	rs3758526	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,10:32:27:0.370:2	./.	./.	./.	./.	0/1:19,22:30:41:0.537:2	0/1:37,18:30:55:0.327:2
chr10	96106240	rs11187895	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:39,37:31:76:0.487:2	0/1:30,20:29:50:0.400:2	./.	./.	./.	./.	0/1:32,11:31:43:0.256:2	./.	0/1:47,38:30:85:0.447:2	./.	./.
chr10	96114835	rs12572897	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,15:31:36:0.417:2	./.	./.	./.	./.	0/1:60,33:32:93:0.355:2	0/1:75,31:33:106:0.292:2
chr10	96122543	rs7100430	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,9:33:19:0.474:2	0/1:4,5:26:9:0.556:2	./.	./.	0/1:7,11:31:18:0.611:2	0/1:6,5:31:11:0.455:2	0/1:1,16:32:17:0.941:2	./.	0/1:8,8:33:16:0.500:2	0/1:7,14:33:21:0.667:2	./.
chr10	96162803	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.
chr10	96163039	rs2477534	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,2:27:2:1.00:2	./.	0/1:0,5:26:5:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr10	96163311	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr10	96271344	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:33:75:0.053:2	./.	./.	./.
chr10	96305729	rs10882474	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,35:29:105:0.333:2	0/1:40,20:29:60:0.333:2	0/1:9,6:29:15:0.400:2	0/1:49,22:30:71:0.310:2	0/1:33,15:29:48:0.313:2	./.	0/1:29,18:29:47:0.383:2	./.	0/1:41,14:29:55:0.255:2	0/1:34,22:29:56:0.393:2	0/1:0,23:28:23:1.00:2
chr10	96313960	rs11188019	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,62:33:133:0.466:2	0/1:36,40:33:76:0.526:2	0/1:6,14:33:20:0.700:2	0/1:92,67:33:159:0.421:2	0/1:43,57:32:100:0.570:2	./.	0/1:52,36:33:88:0.409:2	./.	0/1:82,83:34:165:0.503:2	0/1:67,80:33:147:0.544:2	0/1:0,182:33:182:1.00:2
chr10	96313999	rs58643119	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,40:32:113:0.354:2	./.	./.	./.	./.	./.	./.	./.
chr10	96443723	rs56113807	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,18:30:48:0.375:2	./.	./.	./.	./.	./.	./.	./.
chr10	96447887	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,4:30:107:0.037:2	./.	./.	./.	./.	./.	./.
chr10	96447930	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:116,4:31:120:0.033:2	./.	./.	./.	./.	./.	./.
chr10	96454687	rs116092201	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,35:33:72:0.486:2	./.	./.	./.	./.	./.	./.	./.
chr10	96480239	rs200741772	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:32:86:0.047:2	./.	./.	./.	./.
chr10	96480279	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:32:62:0.065:2	./.	./.	./.	./.
chr10	96493058	rs1126545	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,30:31:62:0.484:2	0/1:56,37:30:93:0.398:2	./.	./.	./.	0/1:63,42:32:105:0.400:2	0/1:89,48:32:137:0.350:2
chr10	96495049	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:32:133:0.030:2	./.	./.	./.	./.	./.
chr10	96534922	rs17878459	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,89:29:190:0.468:2
chr10	96540257	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,5:30:55:0.091:2	./.	./.	./.	./.	./.	0/1:73,4:33:77:0.052:2
chr10	96541616	rs4244285	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,6:31:9:0.667:2	0/1:18,25:31:43:0.581:2	./.	./.	./.	0/1:21,9:33:30:0.300:2	0/1:20,24:33:44:0.545:2
chr10	96602605	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:32:103:0.039:2	./.
chr10	96602622	rs3758580	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,32:30:67:0.478:2	0/1:45,49:31:94:0.521:2	./.	./.	./.	0/1:58,48:31:106:0.453:2	0/1:64,56:31:120:0.467:2
chr10	96609690	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:31:106:0.038:2	./.
chr10	96609697	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:31:105:0.038:2	./.
chr10	96702047	rs1799853	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,69:32:152:0.454:2	./.	0/1:98,60:32:158:0.380:2	./.	./.	./.
chr10	96707537	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,5:31:82:0.061:2	./.	./.	./.	./.	./.
chr10	96707594	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,4:32:83:0.048:2	./.	./.	0/1:120,4:33:124:0.032:2	./.	./.	./.
chr10	96707595	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,4:32:84:0.048:2	./.	./.	0/1:122,5:29:127:0.039:2	./.	./.	./.
chr10	96741098	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,5:32:96:0.052:2	./.
chr10	96741115	rs141283168	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,5:33:89:0.056:2	./.
chr10	96748635	rs2017319	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,96:32:155:0.619:2	./.	./.	./.	./.	./.	./.	./.
chr10	96748737	rs1057911	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:31:12:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	96798749	rs10509681	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,38:31:79:0.481:2	./.	0/1:34,42:33:76:0.553:2	./.	./.	./.
chr10	96802804	rs146806199	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,39:33:111:0.351:2	./.	./.	./.	./.	./.
chr10	96805661	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:32:62:0.065:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	96818119	rs1058930	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:52,56:33:109:0.519:2	0/1:30,29:32:59:0.492:2	./.	./.	./.	./.	0/1:42,35:32:78:0.455:2	./.	0/1:59,51:33:110:0.464:2	0/1:34,31:32:65:0.477:2	0/1:61,63:33:124:0.508:2
chr10	96827030	rs11572080	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,53:32:120:0.442:2	./.	0/1:63,55:32:118:0.466:2	./.	./.	./.
chr10	96954298	rs591157	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,19:31:42:0.452:2	0/1:14,23:31:37:0.622:2	0/1:0,3:33:3:1.00:2	0/1:37,32:32:69:0.464:2	./.	0/1:39,17:32:56:0.304:2	./.	0/1:43,24:32:67:0.358:2	0/1:85,4:35:89:0.045:2	0/1:33,17:31:50:0.340:2	0/1:42,40:32:82:0.488:2
chr10	96954360	rs11188225	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:33:8:1.00:2	0/1:60,49:32:109:0.450:2	./.	0/1:40,31:32:71:0.437:2	./.	./.	./.	0/1:36,30:32:66:0.455:2	0/1:59,52:32:112:0.468:2
chr10	96967024	rs200758572	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,22:31:65:0.338:2	./.	./.	./.	./.	./.
chr10	96971638	rs75252129	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,85:31:146:0.582:2	./.	./.	./.	./.	./.
chr10	96997820	rs1049814	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,46:30:106:0.434:2	0/1:60,79:30:139:0.568:2	./.	0/1:91,66:29:157:0.420:2	0/1:84,79:30:163:0.485:2	./.	./.	./.
chr10	97023630	rs2296961	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	./.	0/1:32,34:32:66:0.515:2	./.	./.	./.	0/1:0,73:32:73:1.00:2	0/1:47,24:32:71:0.338:2
chr10	97023769	rs377056135	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,5:27:189:0.026:2	./.	./.	./.	./.
chr10	97023784	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,5:30:179:0.028:2	./.	./.	./.	./.
chr10	97074887	rs35348091	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,51:28:112:0.455:2
chr10	97096460	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:30:63:0.063:2	./.	./.	./.
chr10	97106165	rs726176	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:32:5:0.800:2	0/1:1,31:33:32:0.969:2	./.	./.	0/1:14,11:33:25:0.440:2	0/1:23,21:33:44:0.477:2	0/1:26,24:34:50:0.480:2	./.	0/1:0,61:34:61:1.00:2
chr10	97116219	rs7076888	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,39:31:39:1.00:2	0/1:1,36:31:37:0.973:2	./.	0/1:48,40:29:88:0.455:2	0/1:55,49:30:104:0.471:2	./.	./.	0/1:56,50:30:106:0.472:2	0/1:48,31:31:79:0.392:2	0/1:27,33:30:60:0.550:2	0/1:36,21:30:57:0.368:2
chr10	97127462	rs6583998	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,8:33:8:1.00:2	./.	./.	0/1:1,11:30:12:0.917:2	0/1:3,5:30:8:0.625:2	0/1:4,4:29:8:0.500:2	0/1:2,3:32:5:0.600:2	0/1:10,6:31:16:0.375:2	0/1:0,21:33:21:1.00:2	0/1:6,5:32:11:0.455:2	0/1:0,5:33:5:1.00:2
chr10	97141487	rs61739184	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,42:32:120:0.350:2	./.	./.	./.
chr10	97141523	rs2274490	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:30:76:1.00:2	0/1:0,39:31:39:1.00:2	0/1:6,10:30:16:0.625:2	0/1:0,58:30:58:1.00:2	0/1:38,18:30:56:0.321:2	0/1:40,33:30:73:0.452:2	0/1:36,26:30:62:0.419:2	./.	0/1:0,48:31:49:1.00:2	./.	./.
chr10	97143826	rs35808802	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,40:33:89:0.449:2	0/1:33,28:33:61:0.459:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	97158880	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:33:182:0.022:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	97174269	rs11188316	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:33:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	97174306	rs34507864	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,51:32:116:0.440:2	./.	./.	./.	./.	./.
chr10	97174352	rs2281939	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,27:32:87:0.310:2	./.	0/1:50,27:30:77:0.351:2	./.
chr10	97174537	rs7081076	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,37:31:108:0.343:2	./.	./.	./.
chr10	97174605	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:32:42:0.095:2	./.	./.	./.	./.	./.
chr10	97192324	rs943542	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,30:31:30:1.00:2	0/1:1,33:31:34:0.971:2	0/1:0,42:32:42:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,56:32:56:1.00:2
chr10	97380872	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,28:32:70:0.400:2	./.	./.	./.
chr10	97386497	rs3765571	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,59:30:130:0.454:2	./.	./.	./.	./.	./.	./.
chr10	97388162	rs2275272	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,18:29:37:0.486:2	./.	./.	./.	./.	./.	0/1:28,28:32:56:0.500:2
chr10	97402883	rs200858692	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:32:170:0.024:2	./.	./.	./.	./.	./.
chr10	97402912	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:32:142:0.028:2	./.	./.	./.	./.	./.
chr10	97402930	rs192921117	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:32:11:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	97443319	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,29:26:67:0.433:2	./.	./.	./.	./.	./.
chr10	97444321	rs141088838	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,18:32:50:0.360:2	./.	./.	./.	./.	./.
chr10	97445357	rs55859130	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,19:31:36:0.528:2	./.	./.	./.	./.	./.	./.
chr10	97447373	rs10786229	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:25,29:31:54:0.537:2	0/1:15,15:31:30:0.500:2	0/1:4,3:32:7:0.429:2	./.	0/1:13,18:30:31:0.581:2	./.	0/1:0,55:32:55:1.00:2	0/1:0,67:32:67:1.00:2	0/1:32,29:32:61:0.475:2	./.	./.
chr10	97453433	rs41291570	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,23:31:50:0.469:2	./.	./.	./.	./.	./.
chr10	97453464	rs11553577	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,17:32:49:0.347:2	./.	./.	./.	./.	0/1:29,22:34:51:0.431:2	./.	./.
chr10	97599537	rs61731067	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,73:32:135:0.541:2	./.	./.	./.	./.	0/1:57,44:33:101:0.436:2	./.	./.
chr10	97602222	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:32:159:0.025:2	./.	./.	./.
chr10	97607409	rs149326648	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,46:31:113:0.407:2	./.	./.	./.
chr10	97698338	rs35298116	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,39:32:85:0.459:2
chr10	97698370	rs4918979	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,39:32:78:0.500:2	0/1:26,26:32:52:0.500:2	0/1:0,4:32:4:1.00:2	0/1:60,40:31:100:0.400:2	0/1:2,54:31:56:0.964:2	0/1:1,72:31:73:0.986:2	./.	0/1:1,75:32:76:0.987:2	0/1:56,46:32:103:0.451:2	0/1:0,75:32:75:1.00:2	0/1:38,49:32:87:0.563:2
chr10	97772084	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,6:31:15:0.400:2	./.	./.
chr10	97772358	rs17383738	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,27:28:66:0.409:2	./.	./.	./.	./.	./.	0/1:41,23:28:64:0.359:2	./.
chr10	97784683	rs76996378	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,18:33:55:0.327:2	0/1:27,17:31:44:0.386:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	97816587	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,5:31:74:0.068:2	./.	./.	./.
chr10	97916272	rs200299587	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,20:31:45:0.444:2	./.	./.	./.	./.	./.	./.	./.
chr10	97917843	rs61731060	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,20:32:41:0.488:2	0/1:20,23:33:43:0.535:2	./.	./.	./.	./.	./.	./.	0/1:39,38:34:77:0.494:2	0/1:19,26:33:45:0.578:2	./.
chr10	97919550	rs61729856	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:18,16:29:34:0.471:2	0/1:12,5:28:17:0.294:2	0/1:4,3:29:7:0.429:2	./.	./.	./.	./.	./.	0/1:15,18:29:33:0.545:2	0/1:11,7:29:18:0.389:2	./.
chr10	97919742	rs7081962	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,17:31:42:0.405:2	./.	./.	./.	./.	./.	./.
chr10	97919839	rs41291606	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	0/1:2,3:33:5:0.600:2	0/1:4,4:32:8:0.500:2	./.
chr10	97920793	rs74935399	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,18:32:28:0.643:2	0/1:7,11:33:18:0.611:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	97920798	rs12761705	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,10:31:23:0.435:2	0/1:12,15:31:27:0.556:2	0/1:0,15:30:15:1.00:2	./.	0/1:9,15:31:25:0.625:2	./.	0/1:14,10:32:24:0.417:2	0/1:25,12:30:37:0.324:2
chr10	97921013	rs74457030	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,15:33:41:0.366:2	0/1:10,15:31:25:0.600:2	./.	./.	./.	./.	./.	./.	0/1:23,19:33:42:0.452:2	0/1:30,21:31:51:0.412:2	./.
chr10	97922061	rs76356742	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,10:32:22:0.455:2	./.	./.	./.	./.	./.
chr10	97922667	rs10748660	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,36:32:106:0.340:2	./.	./.	0/1:0,63:32:63:1.00:2	0/1:75,58:32:133:0.436:2	0/1:60,63:32:123:0.512:2	./.	0/1:64,73:31:137:0.533:2
chr10	97922999	rs3748226	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,24:31:51:0.471:2	./.	./.	0/1:1,41:32:42:0.976:2	0/1:43,26:32:69:0.377:2	0/1:42,24:33:66:0.364:2	./.	0/1:41,44:33:85:0.518:2
chr10	97923243	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,20:32:39:0.513:2	./.	./.	./.	./.	./.
chr10	97923366	rs12354644	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,8:33:22:0.364:2	0/1:8,13:33:21:0.619:2	0/1:1,25:33:26:0.962:2	./.	0/1:10,8:33:18:0.444:2	./.	0/1:12,9:34:21:0.429:2	0/1:9,9:32:18:0.500:2
chr10	97956741	rs200501515	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,4:34:35:0.114:2	./.	./.	./.	./.	./.	./.
chr10	97990583	rs727852	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:31:87:1.00:2	0/1:0,32:29:32:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,111:30:111:1.00:2	0/1:106,67:30:173:0.387:2	0/1:0,142:30:142:1.00:2	0/1:71,66:30:137:0.482:2	0/1:0,141:30:141:1.00:2	0/1:74,48:32:122:0.393:2	0/1:59,32:30:91:0.352:2	0/1:0,100:30:100:1.00:2
chr10	98078127	rs7081385	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,73:31:73:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,66:32:66:1.00:2
chr10	98078239	rs6584066	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,83:33:83:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,8:31:8:1.00:2	0/1:1,124:33:125:0.992:2	0/1:0,83:32:83:1.00:2	0/1:0,93:33:93:1.00:2	0/1:0,112:33:112:1.00:2	0/1:1,115:33:116:0.991:2	0/1:0,92:34:92:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,83:33:84:1.00:2
chr10	98105840	rs61858888	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,53:30:120:0.442:2	./.	./.	./.	./.	./.
chr10	98115019	rs41306852	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,12:32:40:0.300:2
chr10	98115056	rs11188733	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:20,18:33:38:0.474:2	0/1:16,5:33:21:0.238:2	./.	./.	./.	./.	./.	./.	./.	0/1:14,9:33:23:0.391:2	./.
chr10	98127893	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	98133483	rs61741039	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:33:3:0.667:2	0/1:2,29:32:31:0.935:2	0/1:12,17:31:29:0.586:2	./.	0/1:0,27:31:27:1.00:2	./.	./.	./.	./.
chr10	98138817	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,16:11:90:0.180:2	0/1:113,23:10:136:0.169:2	./.	./.	./.	0/1:58,11:14:69:0.159:2
chr10	98146800	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,10:14:63:0.159:2	./.
chr10	98172999	rs41291632	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,42:32:89:0.472:2	./.	./.	./.	./.	./.
chr10	98182449	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:33:83:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	98205904	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:31:168:0.024:2	./.	./.	./.	./.
chr10	98287261	rs3789957	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,36:30:65:0.554:2	0/1:18,12:27:30:0.400:2	0/1:4,5:29:9:0.556:2	0/1:1,87:29:88:0.989:2	0/1:0,36:30:36:1.00:2	./.	0/1:0,53:28:53:1.00:2	0/1:40,39:30:79:0.494:2	0/1:0,73:30:73:1.00:2	0/1:27,46:29:73:0.630:2	0/1:47,37:28:84:0.440:2
chr10	98287792	rs12779720	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:32:11:0.273:2	./.	./.	0/1:53,60:32:113:0.531:2	./.	./.	./.	./.	0/1:74,41:33:115:0.357:2
chr10	98319503	rs3818390	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	0/1:0,7:30:7:1.00:2	./.	0/1:0,8:31:8:1.00:2	0/1:6,9:29:15:0.600:2	0/1:0,6:33:6:1.00:2	./.	./.
chr10	98369536	rs3748236	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:29:10:0.500:2	0/1:66,70:29:136:0.515:2	./.	0/1:55,53:29:108:0.491:2	./.	./.	./.	./.	0/1:60,69:28:129:0.535:2
chr10	98380137	rs12784975	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,5:31:13:0.385:2	0/1:48,36:32:84:0.429:2	./.	0/1:47,55:31:102:0.539:2	./.	0/1:69,61:32:130:0.469:2	./.	./.	0/1:50,36:33:86:0.419:2
chr10	98380277	rs3748234	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,43:32:90:0.478:2	0/1:35,22:31:57:0.386:2	0/1:1,10:30:11:0.909:2	0/1:68,52:31:120:0.433:2	0/1:0,111:32:111:1.00:2	./.	0/1:0,101:32:101:1.00:2	./.	0/1:0,115:32:116:1.00:2	0/1:45,46:32:92:0.505:2	0/1:68,75:32:143:0.524:2
chr10	98386558	rs4344416	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:32:55:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,84:31:84:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,76:32:76:1.00:2	0/1:1,115:32:116:0.991:2	0/1:0,90:33:90:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,85:32:85:1.00:2
chr10	98392816	rs41291642	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,16:28:66:0.242:2	0/1:39,23:28:62:0.371:2	./.	0/1:42,33:28:76:0.440:2	./.	./.	./.	./.
chr10	98411293	rs35668691	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,33:32:66:0.500:2	0/1:31,27:33:58:0.466:2	./.
chr10	98469507	rs3748229	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,23:32:42:0.548:2	0/1:17,18:31:35:0.514:2	./.	0/1:24,34:32:58:0.586:2	0/1:1,42:31:43:0.977:2	0/1:21,23:31:44:0.523:2	0/1:31,25:30:56:0.446:2	0/1:32,27:32:59:0.458:2	0/1:23,29:32:52:0.558:2	./.	0/1:22,19:31:41:0.463:2
chr10	98469693	rs17112076	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,61:31:135:0.452:2	./.	./.	./.	./.	0/1:58,50:33:108:0.463:2	0/1:0,94:31:94:1.00:2	./.
chr10	98742021	rs7098255	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,19:32:30:0.633:2
chr10	98742043	rs112594620	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:31:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	98742088	rs7082522	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,21:31:38:0.553:2
chr10	98742605	rs3814163	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,9:32:25:0.360:2
chr10	98742750	rs3829856	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,13:32:53:0.245:2	./.	./.	./.	./.	0/1:39,29:33:68:0.426:2	./.	./.
chr10	98762709	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:31:139:0.029:2
chr10	98778796	rs200648437	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:66,8:23:74:0.108:2	./.	./.	0/1:83,10:20:93:0.108:2	0/1:89,7:23:97:0.073:2	0/1:101,12:20:113:0.106:2	0/1:83,10:20:93:0.108:2	0/1:91,15:19:106:0.142:2	0/1:100,9:17:109:0.083:2	0/1:71,9:20:80:0.113:2	0/1:76,7:20:83:0.084:2
chr10	98802783	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:104,4:31:108:0.037:2	./.	./.	./.	./.	./.	./.
chr10	98803252	rs35388136	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:69,55:29:125:0.444:2	0/1:47,43:29:90:0.478:2	./.	0/1:82,86:29:168:0.512:2	./.	0/1:97,81:29:178:0.455:2	./.	./.	0/1:0,153:30:153:1.00:2	0/1:52,64:29:116:0.552:2	./.
chr10	98806512	rs17112342	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,12:29:37:0.324:2	./.	./.	./.	./.	./.	./.	./.
chr10	98808866	rs2805588	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:31:33:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,36:32:36:1.00:2
chr10	98819317	rs2817676	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:29:29:1.00:2	0/1:1,14:30:15:0.933:2	0/1:0,3:32:3:1.00:2	0/1:26,20:29:46:0.435:2	0/1:32,25:30:57:0.439:2	0/1:0,40:30:40:1.00:2	0/1:23,32:30:55:0.582:2	0/1:22,20:30:42:0.476:2	0/1:0,32:31:32:1.00:2	0/1:0,22:31:22:1.00:2	0/1:19,16:30:35:0.457:2
chr10	98819864	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,4:33:106:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr10	98820528	rs33970910	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,8:33:28:0.286:2	./.	./.	./.	./.	./.	0/1:12,7:32:19:0.368:2
chr10	98924600	rs41307074	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,14:31:37:0.378:2	./.	./.	./.	./.	./.
chr10	99003811	rs34038589	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,45:30:99:0.455:2	./.	./.	./.
chr10	99006083	rs13439	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,14:30:29:0.483:2	0/1:11,10:29:21:0.476:2	./.	./.	./.	0/1:16,3:31:19:0.158:2	./.	./.
chr10	99019177	rs2253301	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,183:29:183:1.00:2	0/1:0,193:28:193:1.00:2	0/1:0,60:29:60:1.00:2	0/1:0,181:29:181:1.00:2	0/1:3,189:28:192:0.984:2	0/1:0,187:29:187:1.00:2	0/1:116,80:30:196:0.408:2	0/1:1,187:29:188:0.995:2	0/1:0,178:30:178:1.00:2	0/1:0,187:29:187:1.00:2	0/1:0,182:29:182:1.00:2
chr10	99024572	rs793524	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,13:33:34:0.382:2	0/1:3,13:32:16:0.813:2	./.	./.	./.	0/1:21,23:34:44:0.523:2	./.	./.
chr10	99079892	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,24:34:41:0.585:2	./.	./.
chr10	99080434	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,3:34:27:0.111:2	./.	./.	./.	./.	./.	./.	./.
chr10	99080585	rs3781373	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,15:32:15:1.00:2	0/1:0,10:31:10:1.00:2	./.	0/1:5,5:30:10:0.500:2	0/1:5,11:29:16:0.688:2	0/1:0,10:31:10:1.00:2	0/1:10,8:31:18:0.444:2	0/1:18,18:31:36:0.500:2	0/1:13,11:33:24:0.458:2	0/1:0,21:31:21:1.00:2	0/1:12,6:32:18:0.333:2
chr10	99080871	rs1334891	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:2,68:31:70:0.971:2	0/1:0,32:31:32:1.00:2	0/1:2,4:31:6:0.667:2	./.	./.	0/1:2,102:31:104:0.981:2	0/1:64,64:31:128:0.500:2	./.	0/1:54,45:32:99:0.455:2	0/1:0,81:31:81:1.00:2	./.
chr10	99080981	rs1334892	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,10:31:10:1.00:2	0/1:0,6:31:6:1.00:2	./.	0/1:11,6:30:17:0.353:2	0/1:3,4:27:7:0.571:2	0/1:0,14:30:14:1.00:2	0/1:1,5:29:6:0.833:2	0/1:6,13:31:19:0.684:2	0/1:4,5:30:9:0.556:2	0/1:1,16:31:17:0.941:2	0/1:2,3:32:5:0.600:2
chr10	99081117	rs11189129	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:30:7:0.429:2	./.	./.	./.	./.	0/1:13,23:30:36:0.639:2	./.	./.	./.
chr10	99116903	rs1048445	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,5:32:8:0.625:2	0/1:33,44:32:77:0.571:2	0/1:39,36:32:75:0.480:2	./.	./.	0/1:39,44:33:83:0.530:2	./.	./.	0/1:47,33:33:80:0.413:2
chr10	99118382	rs2297988	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,45:30:96:0.469:2	0/1:37,40:29:77:0.519:2	./.	./.	0/1:0,88:29:88:1.00:2	./.	./.	0/1:0,74:29:74:1.00:2
chr10	99125924	rs139305944	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,35:32:68:0.515:2	./.	./.	./.
chr10	99125949	rs2275580	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:1,21:32:22:0.955:2	./.	0/1:31,23:32:54:0.426:2	0/1:43,34:31:77:0.442:2	0/1:0,65:32:65:1.00:2	0/1:40,33:32:73:0.452:2	./.	0/1:34,35:33:69:0.507:2	0/1:0,60:32:60:1.00:2	./.
chr10	99126249	rs2275581	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,27:30:62:0.435:2	0/1:26,42:30:68:0.618:2	./.	./.	0/1:27,26:31:53:0.491:2	./.	./.	0/1:29,25:30:54:0.463:2
chr10	99126513	rs45527941	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,13:32:33:0.394:2	./.	./.	./.
chr10	99129230	rs6584122	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,10:31:23:0.435:2	./.	./.	./.	./.	0/1:62,58:29:120:0.483:2	0/1:54,43:30:97:0.443:2	./.	./.
chr10	99130282	rs11189170	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,5:32:14:0.357:2	./.	./.	./.	./.	0/1:76,70:31:146:0.479:2	./.	./.	./.
chr10	99130755	rs61739160	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,20:32:50:0.400:2
chr10	99139140	rs41300217	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,16:31:35:0.457:2	./.	./.
chr10	99141205	rs2275089	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,12:30:13:0.923:2	0/1:85,68:30:153:0.444:2	0/1:83,75:30:158:0.475:2	./.	./.	0/1:0,138:30:139:1.00:2	./.	./.	0/1:1,111:30:112:0.991:2
chr10	99141484	rs12218483	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:106,84:32:190:0.442:2	0/1:105,86:31:191:0.450:2	./.	./.	0/1:93,91:32:184:0.495:2	./.	./.	0/1:104,87:31:191:0.455:2
chr10	99150237	rs41300219	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,26:32:59:0.441:2	./.	./.	./.
chr10	99155984	rs3814553	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,5:32:7:0.714:2	0/1:40,32:30:73:0.444:2	0/1:41,42:31:83:0.506:2	./.	./.	0/1:2,91:32:93:0.978:2	./.	./.	0/1:0,46:31:46:1.00:2
chr10	99160152	rs1048442	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:34:7:0.429:2	0/1:23,44:31:67:0.657:2	0/1:34,36:31:70:0.514:2	./.	./.	0/1:3,79:32:82:0.963:2	./.	./.	0/1:0,77:31:78:1.00:2
chr10	99160965	rs2275091	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:33:69:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,121:33:121:1.00:2	0/1:1,124:32:125:0.992:2	0/1:0,121:32:121:1.00:2	0/1:93,74:33:167:0.443:2	0/1:0,117:32:117:1.00:2	0/1:0,96:33:96:1.00:2	0/1:0,103:32:103:1.00:2	./.
chr10	99186142	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,6:29:25:0.240:2	./.	./.	./.	./.	./.	./.
chr10	99190253	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,3:33:27:0.111:2	./.	./.	./.	./.
chr10	99190755	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:31:99:0.040:2	./.	./.	./.	./.
chr10	99190764	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:29:99:0.040:2	./.	./.	./.	./.
chr10	99190878	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,7:31:90:0.078:2	./.	./.	./.	./.	./.
chr10	99192206	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,21:29:124:0.169:2	./.	./.	./.	./.	./.	./.
chr10	99205686	rs2297666	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:32:60:1.00:2	0/1:3,24:32:27:0.889:2	0/1:8,14:33:22:0.636:2	0/1:46,33:30:79:0.418:2	./.	./.	0/1:42,39:32:81:0.481:2	0/1:56,49:32:105:0.467:2	0/1:48,39:33:88:0.448:2	0/1:1,67:31:68:0.985:2	./.
chr10	99205731	rs4919098	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,8:29:23:0.348:2	./.	./.	0/1:0,114:30:114:1.00:2	./.	0/1:91,84:29:175:0.480:2	0/1:63,62:32:125:0.496:2	./.	./.
chr10	99211504	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,4:29:40:0.100:2	./.	./.	./.	./.	./.	./.
chr10	99215722	rs200975188	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,4:30:25:0.160:2	./.	./.	./.	./.
chr10	99219885	rs2152092	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,51:32:94:0.543:2	0/1:2,144:32:146:0.986:2	0/1:54,65:32:119:0.546:2	./.	0/1:57,79:32:136:0.581:2	./.	./.	0/1:36,36:32:72:0.500:2
chr10	99220707	rs3740526	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,54:30:55:0.982:2	0/1:0,33:31:33:1.00:2	0/1:6,6:31:12:0.500:2	0/1:32,31:30:63:0.492:2	./.	0/1:33,23:29:56:0.411:2	0/1:37,49:30:86:0.570:2	0/1:43,22:30:65:0.338:2	0/1:1,52:30:53:0.981:2	0/1:1,55:29:56:0.982:2	0/1:36,28:31:64:0.438:2
chr10	99221255	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	99225645	rs12360068	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,23:30:61:0.377:2	./.	./.	./.
chr10	99225846	rs17112809	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,41:31:101:0.406:2
chr10	99229394	rs2275583	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,24:29:53:0.453:2	./.	./.	0/1:44,30:29:74:0.405:2	./.	./.	0/1:25,31:30:56:0.554:2
chr10	99229489	rs11592973	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,30:31:62:0.484:2	0/1:20,28:31:48:0.583:2	0/1:56,35:31:91:0.385:2	./.	./.	./.	./.	./.
chr10	99240019	.	C	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:12,4:23:16:0.250:2	./.	./.	0/1:10,5:22:15:0.333:2	./.	./.	./.	./.	./.	0/1:12,6:15:18:0.333:2	0/1:20,7:19:27:0.259:2
chr10	99240022	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,3:29:20:0.150:2	./.	./.
chr10	99240048	rs7897727	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:31:9:0.333:2	0/1:0,10:32:10:1.00:2	0/1:2,3:32:5:0.600:2	./.	0/1:4,7:31:11:0.636:2	./.	./.	0/1:8,8:31:16:0.500:2
chr10	99240758	rs2275586	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:32:95:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,86:33:86:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,88:32:88:1.00:2	0/1:43,47:33:90:0.522:2	0/1:0,137:32:137:1.00:2	0/1:0,74:33:74:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,95:31:95:1.00:2
chr10	99327674	rs148532930	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,39:31:93:0.419:2	./.	./.	./.	./.	./.
chr10	99332488	rs12221474	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,10:29:18:0.556:2	./.	./.	./.	0/1:53,28:30:81:0.346:2	0/1:75,56:29:131:0.427:2	./.	./.	0/1:35,24:26:59:0.407:2
chr10	99337572	rs7094973	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,18:30:18:1.00:2	0/1:0,10:32:10:1.00:2	./.	0/1:0,38:30:38:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,32:31:32:1.00:2	0/1:16,22:31:38:0.579:2	0/1:21,7:33:28:0.250:2	0/1:0,29:31:29:1.00:2	0/1:0,24:32:24:1.00:2	0/1:24,10:33:34:0.294:2
chr10	99350017	rs7093840	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,25:29:25:1.00:2	./.	0/1:13,11:29:24:0.458:2	0/1:16,11:28:27:0.407:2	0/1:9,15:28:24:0.625:2	0/1:9,17:29:26:0.654:2	./.	0/1:1,20:26:21:0.952:2
chr10	99350128	rs7093643	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,6:34:8:0.750:2	0/1:1,37:32:38:0.974:2	./.	0/1:10,20:33:30:0.667:2	0/1:21,13:31:34:0.382:2	0/1:11,18:32:29:0.621:2	0/1:13,23:34:36:0.639:2	./.	0/1:1,36:32:37:0.973:2
chr10	99358901	rs41290456	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,39:32:71:0.549:2	./.	./.	./.	./.
chr10	99361645	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:118,4:33:122:0.033:2	./.	./.	./.	./.	./.	./.
chr10	99371344	rs12261752	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,16:29:35:0.457:2	0/1:10,20:27:30:0.667:2	0/1:0,33:29:33:1.00:2	./.	0/1:19,18:29:37:0.486:2	./.	./.
chr10	99376092	rs3814555	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,18:33:47:0.383:2	./.	0/1:17,19:33:36:0.528:2	./.	0/1:47,29:33:76:0.382:2	0/1:37,11:35:48:0.229:2	./.	0/1:20,18:33:38:0.474:2
chr10	99376152	rs3814556	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,16:31:40:0.400:2	./.	0/1:17,11:30:28:0.393:2	./.	0/1:32,23:30:55:0.418:2	0/1:33,8:32:41:0.195:2	./.	0/1:25,21:30:46:0.457:2
chr10	99377059	rs187104161	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,14:30:39:0.359:2	./.	./.	./.	./.	./.	./.
chr10	99410790	rs7915721	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,40:32:80:0.500:2	./.	0/1:55,43:32:98:0.439:2	./.	0/1:73,50:32:123:0.407:2	0/1:52,44:33:96:0.458:2	./.	0/1:0,84:32:84:1.00:2
chr10	99416635	rs367733994	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:137,4:32:141:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr10	99422648	rs7905087	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,43:33:82:0.524:2	0/1:2,57:33:59:0.966:2	0/1:48,37:33:85:0.435:2	0/1:0,80:32:80:1.00:2	0/1:31,40:32:71:0.563:2	0/1:0,94:33:94:1.00:2	./.	0/1:59,53:32:112:0.473:2
chr10	99426839	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:31:173:0.023:2	./.	./.	./.	./.	./.
chr10	99439541	rs2275047	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,57:32:119:0.479:2	0/1:0,125:31:125:1.00:2	0/1:59,45:32:104:0.433:2	0/1:2,91:31:93:0.978:2	0/1:82,71:31:153:0.464:2	0/1:0,116:33:116:1.00:2	./.	0/1:0,76:32:76:1.00:2
chr10	99439556	rs11556392	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,6:30:17:0.353:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	99498234	rs3818876	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,29:33:29:1.00:2	0/1:0,8:32:8:1.00:2	./.	0/1:1,24:32:25:0.960:2	./.	0/1:0,19:31:19:1.00:2	./.	0/1:0,21:31:21:1.00:2	./.	0/1:0,16:32:16:1.00:2	0/1:9,10:31:19:0.526:2
chr10	99502897	rs17108378	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,26:32:27:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	99504630	rs10882993	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:30:23:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,23:30:23:1.00:2	./.	0/1:0,28:29:28:1.00:2	./.	0/1:0,47:30:47:1.00:2	./.	0/1:0,28:28:28:1.00:2	0/1:23,16:29:39:0.410:2
chr10	99510189	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	99625319	rs56007204	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,51:32:53:0.962:2	0/1:0,28:32:28:1.00:2	0/1:7,7:32:14:0.500:2	0/1:60,42:31:102:0.412:2	0/1:64,70:32:134:0.522:2	0/1:75,38:31:113:0.336:2	0/1:79,89:31:168:0.530:2	./.	./.	./.	./.
chr10	99655648	rs577537	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,30:30:30:1.00:2	0/1:0,25:31:25:1.00:2	./.	0/1:30,31:30:61:0.508:2	0/1:22,31:31:53:0.585:2	0/1:49,32:30:81:0.395:2	0/1:51,27:31:78:0.346:2	./.	./.	./.	./.
chr10	99661339	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,78:31:155:0.503:2	./.	./.	./.
chr10	99664456	rs7068503	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,25:34:55:0.455:2	./.	./.
chr10	99667840	rs35333633	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,9:30:20:0.450:2	./.	./.	./.	./.	./.	./.	./.	0/1:45,38:30:83:0.458:2
chr10	99696003	rs35027739	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,40:29:75:0.533:2	./.	./.	0/1:23,44:30:68:0.657:2	./.	./.	./.
chr10	99770893	rs200610109	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:48,8:17:56:0.143:2	./.	./.	./.	./.	./.	./.	0/1:59,9:14:68:0.132:2	./.	./.	./.
chr10	99968703	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:32:165:0.024:2
chr10	99969475	rs34494334	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,6:31:9:0.667:2	0/1:35,20:33:55:0.364:2	0/1:23,7:31:30:0.233:2	0/1:32,25:32:57:0.439:2	./.	0/1:37,18:32:55:0.327:2	./.	./.	./.
chr10	99969507	rs35122894	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,33:32:55:0.600:2	./.
chr10	99969568	rs11189513	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,72:30:73:0.986:2	0/1:2,35:30:37:0.946:2	./.	./.	./.	0/1:58,55:30:113:0.487:2	0/1:50,20:29:70:0.286:2	./.	0/1:1,76:31:77:0.987:2	./.	0/1:76,44:29:121:0.367:2
chr10	99991408	rs1952061	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:30:102:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,103:30:103:1.00:2	0/1:0,40:29:40:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,106:29:106:1.00:2	0/1:0,120:30:120:1.00:2	0/1:0,101:29:101:1.00:2	0/1:0,127:30:127:1.00:2
chr10	100012192	rs367592797	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,33:31:80:0.413:2
chr10	100013438	rs17524355	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,5:33:7:0.714:2	0/1:40,37:32:77:0.481:2	0/1:43,50:31:93:0.538:2	0/1:71,53:31:124:0.427:2	./.	0/1:69,70:32:139:0.504:2	./.	./.	./.
chr10	100017453	rs1983864	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,56:33:56:1.00:2	0/1:1,35:32:36:0.972:2	./.	./.	./.	0/1:47,41:32:88:0.466:2	0/1:54,56:32:110:0.509:2	./.	0/1:0,96:33:96:1.00:2	./.	0/1:42,22:32:64:0.344:2
chr10	100018844	rs7077073	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,68:30:68:1.00:2	0/1:1,38:31:39:0.974:2	./.	./.	./.	0/1:24,33:29:57:0.579:2	0/1:10,17:30:27:0.630:2	./.	0/1:1,43:31:44:0.977:2	./.	0/1:22,20:32:42:0.476:2
chr10	100020880	rs33995374	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,13:31:26:0.500:2	./.	0/1:0,24:31:24:1.00:2	0/1:9,8:31:17:0.471:2
chr10	100144782	rs2296441	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,25:27:49:0.521:2	0/1:20,17:29:37:0.459:2	0/1:20,18:29:38:0.474:2	0/1:29,28:28:58:0.491:2	0/1:11,19:28:30:0.633:2	0/1:12,5:31:18:0.294:2	./.
chr10	100147060	rs4345897	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,24:31:39:0.615:2	0/1:31,24:30:55:0.436:2	0/1:25,12:30:37:0.324:2	0/1:31,30:31:61:0.492:2	0/1:21,18:32:39:0.462:2	0/1:36,36:31:72:0.500:2	0/1:27,20:31:47:0.426:2	./.
chr10	100148176	rs2147896	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:32:8:0.375:2	0/1:62,59:29:121:0.488:2	0/1:70,49:29:119:0.412:2	0/1:36,44:30:80:0.550:2	0/1:92,45:29:137:0.328:2	0/1:53,64:29:117:0.547:2	0/1:63,39:30:102:0.382:2	0/1:44,34:30:78:0.436:2	./.
chr10	100167396	rs12763326	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,11:31:47:0.234:2	./.	0/1:51,10:33:61:0.164:2	0/1:39,16:31:55:0.291:2	0/1:26,15:31:41:0.366:2	./.	./.
chr10	100179851	rs2296436	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,7:30:10:0.700:2	0/1:66,50:32:116:0.431:2	./.	./.	./.	./.	./.	./.	./.
chr10	100179883	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:32:121:0.033:2	./.	./.	./.	./.	./.
chr10	100183570	rs2296434	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,6:30:8:0.750:2	0/1:42,40:30:82:0.488:2	./.	./.	./.	./.	./.	./.	./.
chr10	100184062	rs2296433	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,14:31:35:0.400:2	./.	0/1:17,9:32:28:0.346:2	0/1:23,9:30:32:0.281:2	0/1:18,17:32:35:0.486:2	./.	./.
chr10	100184063	rs2296432	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,14:32:36:0.389:2	./.	0/1:18,10:33:28:0.357:2	0/1:24,9:32:33:0.273:2	0/1:19,17:33:36:0.472:2	./.	./.
chr10	100189568	rs11592273	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,26:30:67:0.388:2	./.	./.	./.	./.	./.	./.
chr10	100190920	rs1801287	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,15:32:34:0.455:2	./.	./.	0/1:104,86:31:190:0.453:2	0/1:97,84:31:181:0.464:2	0/1:98,92:31:190:0.484:2	0/1:3,129:32:132:0.977:2	0/1:87,57:31:144:0.396:2	0/1:65,43:31:108:0.398:2
chr10	100219374	rs10883100	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:30:45:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,69:31:69:1.00:2	./.	./.	0/1:51,35:31:86:0.407:2	0/1:54,32:30:86:0.372:2	0/1:50,29:32:79:0.367:2	0/1:31,26:30:57:0.456:2	0/1:34,29:31:63:0.460:2
chr10	100221596	rs74375744	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,7:31:10:0.700:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	101090160	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,4:27:21:0.190:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	101090428	rs2862600	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:31:53:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,3:33:3:1.00:2	0/1:33,40:32:73:0.548:2	0/1:41,42:32:83:0.506:2	0/1:0,84:32:84:1.00:2	0/1:0,85:32:85:1.00:2	0/1:1,93:32:94:0.989:2	0/1:0,76:32:76:1.00:2	0/1:39,22:32:61:0.361:2	0/1:0,48:32:48:1.00:2
chr10	101166544	rs2234971	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,90:31:189:0.476:2	./.	./.	./.	./.	./.
chr10	101293035	rs41290504	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:31:12:0.583:2	./.	./.	0/1:67,60:32:127:0.472:2	0/1:3,124:32:127:0.976:2	0/1:79,76:32:155:0.490:2	0/1:62,54:33:116:0.466:2	0/1:40,49:32:89:0.551:2	0/1:52,44:32:96:0.458:2
chr10	101294936	rs113459553	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,84:32:190:0.442:2	./.	./.	./.	./.	./.
chr10	101445591	rs3740078	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:32:11:0.273:2	./.	0/1:54,20:32:74:0.270:2	./.	./.	0/1:2,105:32:107:0.981:2	./.	0/1:56,24:32:80:0.300:2	./.
chr10	101451194	rs72832512	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,75:29:76:0.987:2	0/1:0,24:30:24:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	101451259	rs11190245	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	0/1:38,33:31:71:0.465:2	./.	./.	0/1:0,108:32:108:1.00:2	./.	0/1:40,32:33:72:0.444:2	./.
chr10	101473218	rs2231687	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,38:33:38:1.00:2	0/1:0,22:32:22:1.00:2	./.	0/1:0,40:33:40:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,38:32:38:1.00:2	0/1:18,17:32:35:0.486:2	0/1:0,42:31:42:1.00:2	0/1:0,47:33:47:1.00:2	0/1:1,37:32:38:0.974:2	0/1:29,21:33:50:0.420:2
chr10	101492104	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.	./.	./.	./.
chr10	101502968	rs3740076	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:4,164:29:168:0.976:2	0/1:1,115:28:116:0.991:2	./.	./.	./.	./.	./.	0/1:120,78:28:198:0.394:2	./.	0/1:111,70:29:181:0.387:2	./.
chr10	101542578	rs717620	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,15:32:33:0.455:2	0/1:14,4:33:18:0.222:2	./.	0/1:5,8:32:13:0.615:2	./.	./.	./.	0/1:19,18:33:37:0.486:2
chr10	101544396	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,8:20:91:0.088:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	101544447	rs927344	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,83:32:84:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,8:27:8:1.00:2	0/1:0,88:31:88:1.00:2	0/1:1,74:31:75:0.987:2	0/1:0,88:30:88:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,104:31:104:1.00:2	0/1:0,98:32:98:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,102:31:102:1.00:2
chr10	101554213	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:31:74:0.054:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	101563815	rs2273697	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,185:32:189:0.979:2	0/1:2,93:32:95:0.979:2	./.	./.	./.	0/1:103,90:31:193:0.466:2	./.	0/1:90,108:32:198:0.545:2	0/1:3,186:33:189:0.984:2	0/1:105,83:32:188:0.441:2	./.
chr10	101604207	rs3740066	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,18:32:37:0.486:2	0/1:27,14:31:41:0.341:2	0/1:37,10:31:47:0.213:2	0/1:26,13:31:39:0.333:2	0/1:32,25:32:57:0.439:2	./.	./.	0/1:0,28:33:28:1.00:2
chr10	101610371	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:34:100:0.040:2	./.	./.	./.	./.
chr10	101636917	rs11190304	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,54:31:139:0.388:2	./.	./.	./.	./.	./.
chr10	101639796	rs2255901	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,176:30:177:0.994:2	0/1:0,111:31:111:1.00:2	0/1:18,17:30:35:0.486:2	0/1:1,189:29:190:0.995:2	0/1:110,77:29:187:0.412:2	0/1:122,76:29:198:0.384:2	0/1:100,83:29:183:0.454:2	0/1:1,184:29:185:0.995:2	./.	./.	0/1:2,186:30:188:0.989:2
chr10	101639877	rs11190305	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,21:32:37:0.568:2	0/1:1,173:32:174:0.994:2	0/1:97,79:31:176:0.449:2	0/1:101,86:31:187:0.460:2	0/1:107,78:32:185:0.422:2	0/1:6,178:32:184:0.967:2	./.	./.	0/1:0,166:31:166:1.00:2
chr10	101645498	rs2490763	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:29:66:1.00:2	0/1:1,36:27:37:0.973:2	0/1:3,4:30:7:0.571:2	0/1:2,89:29:91:0.978:2	0/1:33,30:28:63:0.476:2	0/1:63,36:29:99:0.364:2	0/1:81,26:30:108:0.243:2	0/1:2,103:28:105:0.981:2	./.	./.	0/1:0,85:29:85:1.00:2
chr10	101645499	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:33:94:0.043:2	./.
chr10	101657880	rs7919323	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,13:32:19:0.684:2	0/1:0,117:32:117:1.00:2	0/1:63,39:31:102:0.382:2	0/1:85,63:32:148:0.426:2	0/1:73,39:31:112:0.348:2	0/1:0,119:32:119:1.00:2	./.	./.	0/1:3,117:32:120:0.975:2
chr10	101715899	rs2862923	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,87:32:87:1.00:2	0/1:0,53:32:53:1.00:2	0/1:5,7:33:12:0.583:2	./.	0/1:24,19:32:43:0.442:2	0/1:41,50:32:91:0.549:2	./.	0/1:1,78:32:79:0.987:2	./.	./.	0/1:0,119:32:119:1.00:2
chr10	101716112	rs35924554	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,48:33:48:1.00:2	0/1:1,27:32:28:0.964:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	101716370	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:32:47:0.085:2	./.	./.	./.	./.	./.
chr10	101716865	rs146379907	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,4:33:33:0.121:2	./.	./.	./.	./.	./.	./.	./.
chr10	101802262	rs61733667	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,62:32:65:0.954:2	0/1:2,46:32:48:0.958:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	101824954	rs3750717	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,19:31:33:0.576:2
chr10	101829514	rs61751507	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,112:29:113:0.991:2	0/1:1,78:30:79:0.987:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	101912064	rs2862954	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,130:29:133:0.977:2	0/1:99,80:28:179:0.447:2	0/1:115,52:30:167:0.311:2	0/1:98,75:29:173:0.434:2	0/1:130,61:30:191:0.319:2	0/1:112,48:29:160:0.300:2	0/1:2,149:28:151:0.987:2
chr10	101937969	rs3750707	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,12:33:22:0.545:2	./.	./.	./.
chr10	101953745	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:34:114:0.035:2
chr10	101959721	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.
chr10	101964312	rs17880383	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,31:30:106:0.292:2	./.	0/1:65,27:30:92:0.293:2	./.	./.	./.	./.
chr10	101977883	rs2230804	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:32:10:0.500:2	./.	0/1:0,30:31:30:1.00:2	0/1:35,23:31:58:0.397:2	0/1:28,19:32:47:0.404:2	0/1:0,51:31:51:1.00:2	./.	0/1:26,21:32:47:0.447:2	0/1:0,66:32:66:1.00:2
chr10	101978767	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:34:90:0.044:2	./.	./.
chr10	101993033	rs35490714	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,24:32:67:0.358:2
chr10	102006625	rs7073610	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:33:10:0.600:2	./.	./.	./.	./.	0/1:36,73:32:109:0.670:2	./.	./.	./.
chr10	102006637	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,4:35:95:0.042:2	./.	./.	./.	./.	./.	./.	./.
chr10	102016044	rs2270962	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:30:7:0.714:2	./.	./.	./.	./.	0/1:70,48:30:118:0.407:2	./.	./.	./.
chr10	102046380	rs33965491	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,10:32:20:0.500:2	./.	./.	./.
chr10	102048208	rs12782963	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,7:30:27:0.259:2	./.	./.	./.
chr10	102050242	rs6584356	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:31:5:0.800:2	./.	./.	./.	./.	0/1:27,27:31:54:0.500:2	./.	./.	./.
chr10	102056745	rs2278842	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,4:30:12:0.333:2	./.	./.	./.	./.	0/1:63,57:31:121:0.475:2	./.	0/1:50,36:31:86:0.419:2	./.
chr10	102056866	rs150484120	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:33:14:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	102089663	rs569511	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,6:29:19:0.316:2	0/1:49,34:28:83:0.410:2	./.	0/1:36,38:28:74:0.514:2	./.	./.	0/1:42,41:30:83:0.494:2	./.	0/1:56,43:31:99:0.434:2
chr10	102107251	rs1054411	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,27:29:28:0.964:2	0/1:0,18:27:18:1.00:2	./.	0/1:25,28:29:53:0.528:2	0/1:33,36:29:69:0.522:2	./.	0/1:18,13:30:31:0.419:2	0/1:28,19:27:47:0.404:2	0/1:26,20:30:46:0.435:2	0/1:0,45:29:45:1.00:2	./.
chr10	102116311	rs2234970	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,156:32:157:1.00:2	0/1:1,75:33:78:0.987:2	0/1:9,13:33:22:0.591:2	0/1:100,88:33:188:0.468:2	0/1:104,92:32:197:0.469:2	./.	0/1:101,94:32:195:0.482:2	0/1:106,89:33:195:0.456:2	0/1:97,87:33:184:0.473:2	0/1:103,88:33:192:0.461:2	./.
chr10	102222957	rs3793771	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,64:33:64:1.00:2	0/1:0,38:33:38:1.00:2	./.	./.	./.	0/1:45,35:33:80:0.438:2	./.	./.	./.	./.	0/1:1,118:33:119:0.992:2
chr10	102247408	rs2298075	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,36:31:36:1.00:2	0/1:0,22:30:22:1.00:2	./.	./.	./.	0/1:29,23:30:52:0.442:2	./.	./.	./.	./.	0/1:0,43:30:43:1.00:2
chr10	102247526	rs2298074	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,58:32:58:1.00:2	0/1:0,34:33:34:1.00:2	./.	./.	./.	0/1:37,44:32:81:0.543:2	./.	./.	./.	./.	0/1:0,67:31:67:1.00:2
chr10	102256974	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:33:80:0.050:2	./.	./.
chr10	102258991	rs41290542	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,26:31:66:0.394:2	./.	./.	./.	./.	0/1:46,25:33:71:0.352:2
chr10	102265183	rs2295772	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,65:31:68:0.956:2	0/1:4,34:32:38:0.895:2	./.	./.	./.	0/1:48,46:30:94:0.489:2	./.	./.	./.	./.	0/1:1,59:31:60:0.983:2
chr10	102265815	rs2295773	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,57:33:59:0.966:2	0/1:1,41:32:42:0.976:2	./.	./.	./.	0/1:41,57:32:98:0.582:2	./.	./.	./.	./.	0/1:1,60:32:61:0.984:2
chr10	102265847	rs2295774	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,83:31:86:0.965:2	0/1:2,52:30:54:0.963:2	./.	./.	./.	0/1:60,61:30:122:0.504:2	./.	./.	./.	./.	0/1:1,91:30:92:0.989:2
chr10	102269085	rs3793706	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,39:31:39:1.00:2	0/1:0,18:31:18:1.00:2	./.	./.	./.	0/1:41,24:31:65:0.369:2	./.	./.	./.	./.	0/1:0,65:32:65:1.00:2
chr10	102269206	rs3763695	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,21:31:21:1.00:2	0/1:0,7:33:7:1.00:2	./.	./.	./.	0/1:9,12:33:21:0.571:2	./.	./.	./.	./.	0/1:0,21:34:21:1.00:2
chr10	102295836	rs2295778	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,30:31:53:0.566:2	0/1:48,23:32:71:0.324:2	0/1:20,18:34:38:0.474:2	0/1:27,13:32:40:0.325:2	./.
chr10	102307921	rs11190609	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,22:29:47:0.468:2	./.
chr10	102506070	rs4472867	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:32:6:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,54:29:54:1.00:2	0/1:0,71:29:71:1.00:2	0/1:0,28:30:28:1.00:2	0/1:46,34:28:80:0.425:2	0/1:0,36:30:36:1.00:2	0/1:0,25:27:25:1.00:2	0/1:0,38:29:38:1.00:2
chr10	102568983	rs1800898	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,18:28:33:0.545:2	0/1:28,17:29:45:0.378:2	./.	./.	0/1:5,20:27:25:0.800:2	0/1:12,19:30:31:0.613:2
chr10	102676686	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:32:46:0.087:2	./.	./.	./.	./.
chr10	102684380	rs10883563	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:30:27:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,36:30:36:1.00:2	0/1:6,9:31:15:0.600:2	./.	0/1:12,9:31:21:0.429:2	0/1:16,17:31:33:0.515:2	0/1:1,21:31:22:0.955:2	0/1:22,13:30:35:0.371:2	0/1:0,45:31:45:1.00:2
chr10	102690781	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:34:105:0.038:2	./.
chr10	102707526	rs12780429	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,18:32:29:0.621:2
chr10	102734778	rs4919510	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,9:32:13:0.692:2	./.	0/1:0,9:31:9:1.00:2	0/1:6,6:33:12:0.500:2	./.	./.	./.	./.
chr10	102738766	rs118166648	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:26:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	102746503	rs2863095	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,29:29:50:0.580:2	./.	0/1:0,45:30:45:1.00:2	0/1:26,14:29:40:0.350:2	./.	./.	./.	./.
chr10	102749095	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:33:125:0.032:2	./.	./.	./.
chr10	102750783	rs3740487	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,16:33:41:0.390:2	./.	0/1:1,50:32:51:0.980:2	0/1:35,26:32:61:0.426:2	./.	./.	./.	./.
chr10	102762544	rs41291476	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,27:30:51:0.529:2	./.	./.	./.	./.	./.	./.	./.
chr10	102765221	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.
chr10	102766574	rs807024	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:29:13:0.385:2	./.	0/1:0,10:30:10:1.00:2	0/1:5,4:31:9:0.444:2	0/1:12,6:30:18:0.333:2	./.	./.	./.
chr10	102780375	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,54:31:100:0.540:2	./.	./.	./.
chr10	102792230	rs59193147	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,3:31:15:0.200:2	./.	./.	./.	./.	./.	0/1:49,41:32:90:0.456:2	./.	./.
chr10	102824349	rs807037	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,17:31:17:1.00:2	0/1:27,28:32:55:0.509:2	0/1:1,48:31:49:0.980:2	0/1:0,63:32:63:1.00:2	0/1:0,80:32:80:1.00:2	./.	0/1:31,39:33:70:0.557:2	0/1:34,10:33:44:0.227:2	0/1:1,43:32:44:0.977:2
chr10	102849398	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:32:46:0.087:2	./.	./.	./.	./.
chr10	102850093	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:30:53:0.075:2	./.	./.	./.
chr10	102850205	rs11190820	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,33:29:56:0.589:2	./.	./.	0/1:30,20:30:50:0.400:2
chr10	102850291	rs7920881	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:28:11:1.00:2	./.	0/1:68,36:30:104:0.346:2	0/1:63,44:30:107:0.411:2	0/1:57,49:31:106:0.462:2	./.	./.	./.	0/1:70,45:31:115:0.391:2
chr10	102988345	rs941909	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.
chr10	103285900	rs17767748	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,73:31:178:0.410:2	./.	./.	./.	./.	./.	./.
chr10	103292795	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,5:29:94:0.053:2
chr10	103339235	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,27:32:53:0.509:2	./.	./.	./.
chr10	103340056	rs3730477	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,43:31:48:0.896:2	0/1:0,27:32:27:1.00:2	0/1:0,8:32:8:1.00:2	0/1:46,44:32:90:0.489:2	./.	./.	./.	0/1:50,42:32:92:0.457:2	0/1:35,35:32:70:0.500:2	./.	0/1:40,27:32:67:0.403:2
chr10	103340144	rs3730476	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,43:29:47:0.915:2	0/1:0,29:30:29:1.00:2	0/1:0,15:30:15:1.00:2	0/1:40,43:31:83:0.518:2	0/1:54,52:30:106:0.491:2	./.	./.	0/1:63,48:29:111:0.432:2	0/1:57,49:31:106:0.462:2	./.	0/1:37,35:28:72:0.486:2
chr10	103344589	rs36010384	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,22:32:62:0.355:2	./.	./.	./.	./.	./.	./.
chr10	103361088	rs7874	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,103:31:107:0.963:2	0/1:0,43:31:43:1.00:2	0/1:0,10:29:10:1.00:2	0/1:71,71:30:142:0.500:2	./.	./.	./.	0/1:92,73:30:165:0.442:2	0/1:75,80:30:155:0.516:2	./.	0/1:91,44:31:135:0.326:2
chr10	103368654	rs7006	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,40:29:41:0.976:2	0/1:0,41:29:41:1.00:2	0/1:0,6:31:6:1.00:2	0/1:1,71:29:72:0.986:2	./.	./.	0/1:42,46:29:88:0.523:2	0/1:52,32:30:84:0.381:2	0/1:51,44:30:95:0.463:2	./.	0/1:36,34:30:70:0.486:2
chr10	103384489	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,27:32:58:0.466:2	./.
chr10	103432710	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:32:108:0.037:2	./.	./.	./.	./.
chr10	103530299	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:32:83:0.048:2	./.	./.	./.	./.
chr10	103558701	rs17697840	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,18:32:53:0.340:2	./.
chr10	103577726	rs41291488	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,23:29:37:0.622:2	./.
chr10	103588868	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:33:67:0.060:2	./.	./.	./.	./.	./.
chr10	103769193	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,10:29:19:0.526:2	./.	./.	./.	./.
chr10	103792795	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:31:122:0.033:2
chr10	103825675	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.
chr10	103827737	rs3816	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,53:30:126:0.421:2	0/1:54,31:30:85:0.365:2	./.	./.	./.	0/1:97,55:30:152:0.362:2
chr10	103870304	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:31:93:0.043:2	./.	./.	./.	./.	./.
chr10	103899047	rs143974270	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,70:31:141:0.496:2	./.	./.	./.	./.	./.
chr10	103900729	rs61731871	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,13:31:34:0.382:2	./.
chr10	103920475	rs1049455	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,8:31:16:0.500:2	./.	./.	./.	./.	./.	./.	0/1:22,33:31:55:0.600:2	./.
chr10	103921974	rs147801768	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,42:32:83:0.506:2	./.	./.	./.	./.	./.	./.	./.
chr10	103988265	rs36103207	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,110:32:116:0.948:2	0/1:2,71:32:73:0.973:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	103991381	rs2281983	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,5:31:14:0.357:2	0/1:55,53:30:108:0.491:2	0/1:54,76:30:131:0.585:2	0/1:53,64:30:117:0.547:2	0/1:1,112:31:113:0.991:2	0/1:48,65:30:113:0.575:2	0/1:0,76:32:76:1.00:2	0/1:0,79:31:79:1.00:2	0/1:25,40:31:65:0.615:2
chr10	104135174	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:33:86:0.047:2	./.
chr10	104136469	rs2180707	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:29:18:1.00:2	0/1:0,6:28:6:1.00:2	0/1:0,4:28:4:1.00:2	0/1:0,13:25:13:1.00:2	0/1:0,14:28:14:1.00:2	0/1:0,5:27:5:1.00:2	0/1:0,19:29:19:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,19:29:19:1.00:2	0/1:0,17:29:17:1.00:2	0/1:0,14:27:14:1.00:2
chr10	104136771	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:34:56:0.071:2	./.	./.
chr10	104139097	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:171,4:32:175:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr10	104140350	rs11191274	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,70:32:110:0.636:2	./.	./.	./.	./.	0/1:40,46:33:86:0.535:2	./.	./.
chr10	104140355	rs112809254	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:33:13:0.308:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	104157814	rs187541224	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,44:33:119:0.373:2	./.	./.	./.	./.
chr10	104159196	rs4919633	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	0/1:0,4:29:4:1.00:2	./.	./.	./.
chr10	104160434	rs4919634	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:30:85:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,86:30:86:1.00:2	0/1:0,165:30:165:1.00:2	0/1:1,159:29:160:0.994:2	0/1:0,182:29:182:1.00:2	0/1:0,166:30:166:1.00:2	0/1:0,142:31:142:1.00:2	0/1:0,113:29:113:1.00:2	0/1:0,97:29:97:1.00:2
chr10	104160959	rs11574851	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,17:30:53:0.321:2	./.	./.	./.	./.
chr10	104167034	rs75779120	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,40:31:40:1.00:2	0/1:0,18:30:18:1.00:2	0/1:1,5:30:6:0.833:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	104174895	rs2282295	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,82:30:151:0.543:2	./.	./.	./.
chr10	104176471	rs117436403	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,23:32:35:0.657:2
chr10	104182676	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,4:28:53:0.075:2	./.	./.	./.	./.	./.	./.
chr10	104184081	rs1044476	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,29:33:63:0.460:2	./.	./.	0/1:34,39:33:73:0.534:2
chr10	104184953	rs11597439	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:32:24:1.00:2	0/1:0,15:31:15:1.00:2	0/1:4,6:31:10:0.600:2	0/1:26,17:32:44:0.395:2	0/1:34,19:32:53:0.358:2	0/1:22,19:32:41:0.463:2	./.	0/1:31,17:32:48:0.354:2	./.	./.	0/1:10,14:32:24:0.583:2
chr10	104210735	rs2281878	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:28:3:1.00:2	./.	./.	./.	./.	./.
chr10	104211193	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,4:28:34:0.118:2	./.	./.	./.	./.
chr10	104229785	rs41306870	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:31:47:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,6:31:6:1.00:2	0/1:42,47:33:89:0.528:2	0/1:55,56:31:111:0.505:2	./.	0/1:0,89:32:89:1.00:2	0/1:0,99:31:99:1.00:2	0/1:43,62:32:105:0.590:2	0/1:24,25:30:49:0.510:2	0/1:34,30:31:64:0.469:2
chr10	104230437	rs3740416	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,19:31:27:0.704:2	0/1:2,29:31:31:0.935:2	./.	./.	./.	./.	0/1:6,13:31:19:0.684:2
chr10	104231054	rs11191295	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,50:32:52:0.962:2	0/1:0,49:32:49:1.00:2	0/1:0,11:31:11:1.00:2	0/1:33,53:32:86:0.616:2	0/1:105,77:32:182:0.423:2	./.	0/1:7,148:32:155:0.955:2	0/1:4,137:32:141:0.972:2	0/1:70,48:33:118:0.407:2	0/1:56,32:32:88:0.364:2	0/1:52,28:33:80:0.350:2
chr10	104240716	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,5:27:81:0.062:2	./.	./.	./.
chr10	104377110	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,58:33:112:0.518:2	./.	./.
chr10	104386934	rs17114803	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,39:31:39:1.00:2	./.	./.	./.	./.	0/1:23,49:33:72:0.681:2
chr10	104416093	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:30:71:0.056:2	./.	./.	./.	./.	./.
chr10	104436641	rs8354	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,32:30:32:1.00:2	./.	./.	./.	./.	0/1:0,37:31:37:1.00:2
chr10	104491481	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:31:112:0.036:2	./.	./.	./.	./.	./.
chr10	104572963	rs284860	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:31:9:0.444:2	0/1:26,16:31:42:0.381:2	0/1:22,28:32:50:0.560:2	./.	0/1:27,17:31:44:0.386:2	./.	0/1:0,35:32:35:1.00:2	0/1:18,20:32:38:0.526:2	./.
chr10	104591286	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:32:96:0.042:2
chr10	104596924	rs6163	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,65:33:67:0.970:2	0/1:0,40:32:40:1.00:2	0/1:9,5:31:14:0.357:2	0/1:43,21:32:64:0.328:2	0/1:27,25:32:52:0.481:2	0/1:0,44:32:44:1.00:2	0/1:37,31:32:68:0.456:2	0/1:2,86:32:88:0.977:2	./.	0/1:37,29:34:66:0.439:2	0/1:2,85:32:87:0.977:2
chr10	104596981	rs6162	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,57:32:58:0.983:2	0/1:0,35:32:35:1.00:2	0/1:8,9:32:17:0.529:2	0/1:55,29:31:84:0.345:2	0/1:32,25:31:57:0.439:2	0/1:0,49:31:49:1.00:2	0/1:29,25:32:54:0.463:2	0/1:1,62:31:63:0.984:2	./.	0/1:33,33:32:66:0.500:2	0/1:0,81:32:81:1.00:2
chr10	104638723	rs11191439	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,6:30:8:0.750:2	0/1:44,32:29:76:0.421:2	0/1:25,13:29:38:0.342:2	./.	0/1:27,17:29:44:0.386:2	0/1:34,14:26:48:0.292:2	./.	./.	./.
chr10	104678501	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:32:78:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	104814162	rs2275271	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,9:31:17:0.529:2	0/1:2,146:30:148:0.986:2	0/1:89,71:29:160:0.444:2	0/1:0,165:30:165:1.00:2	0/1:91,73:30:164:0.445:2	0/1:5,140:30:145:0.966:2	./.	0/1:75,83:29:158:0.525:2	0/1:1,148:29:149:0.993:2
chr10	104835919	rs943037	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,79:31:79:1.00:2	./.	./.	./.	0/1:22,23:31:45:0.511:2	0/1:37,36:32:73:0.493:2
chr10	104836853	rs35647154	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,15:32:34:0.441:2	./.	./.	0/1:14,20:32:34:0.588:2	0/1:19,22:31:41:0.537:2	./.	./.	./.
chr10	104849468	rs3740387	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,13:31:22:0.591:2	0/1:0,147:32:147:1.00:2	0/1:64,57:31:121:0.471:2	0/1:1,139:31:140:0.993:2	0/1:61,60:31:121:0.496:2	0/1:1,151:31:152:0.993:2	./.	0/1:62,85:32:147:0.578:2	0/1:1,180:32:181:0.994:2
chr10	104851301	rs17094683	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,53:30:53:1.00:2	./.	./.	./.	0/1:30,23:31:53:0.434:2	0/1:42,32:30:74:0.432:2
chr10	104851396	rs11191553	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,43:31:45:0.956:2	0/1:13,15:32:28:0.536:2	./.	0/1:15,15:32:30:0.500:2	0/1:0,39:32:39:1.00:2	./.	./.	0/1:52,26:32:78:0.333:2
chr10	104855670	rs1926029	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,12:32:14:0.857:2	0/1:0,88:32:88:1.00:2	0/1:44,44:31:88:0.500:2	./.	0/1:68,41:32:109:0.376:2	0/1:0,53:31:53:1.00:2	./.	./.	0/1:74,66:31:140:0.471:2
chr10	104934709	rs10883841	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,13:32:47:0.277:2	./.	./.	./.	0/1:24,27:33:51:0.529:2	./.	./.	0/1:31,13:31:44:0.295:2
chr10	105006274	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:32:106:0.038:2	./.	./.	0/1:139,7:31:146:0.048:2
chr10	105006291	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:32:102:0.040:2	./.	./.	0/1:133,7:34:140:0.050:2
chr10	105006771	rs61869770	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,16:32:24:0.667:2	./.	0/1:14,14:32:28:0.500:2	./.	0/1:41,21:32:62:0.339:2	./.	./.
chr10	105006884	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:33:126:0.032:2	./.	./.	./.	./.	./.
chr10	105007528	rs4917386	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,75:31:76:0.987:2	0/1:0,46:31:46:1.00:2	0/1:6,4:31:10:0.400:2	./.	0/1:41,41:30:82:0.500:2	./.	0/1:54,35:31:89:0.393:2	0/1:59,55:30:114:0.482:2	0/1:42,42:31:84:0.500:2	0/1:28,40:31:68:0.588:2	./.
chr10	105074021	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:33:120:0.033:2	./.	0/1:128,6:34:134:0.045:2	0/1:140,4:32:144:0.028:2	./.
chr10	105108506	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,6:32:95:0.063:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	105108509	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,5:33:95:0.053:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	105108555	rs201230559	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:31:105:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	105108724	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:31:169:0.024:2
chr10	105110716	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.
chr10	105110717	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.
chr10	105110775	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.	./.	./.
chr10	105127816	rs189802876	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	105141492	rs143908412	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,41:30:66:0.621:2	./.	./.	./.	./.	./.	./.
chr10	105154089	rs7911488	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,97:32:97:1.00:2	./.	./.	./.	0/1:28,28:32:56:0.500:2	0/1:37,33:32:70:0.471:2
chr10	105165787	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:33:140:0.029:2	./.	./.	./.
chr10	105174869	rs2271750	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,9:32:20:0.450:2	0/1:91,50:32:141:0.355:2	0/1:5,106:33:111:0.955:2	./.	0/1:91,55:33:146:0.377:2	0/1:99,90:32:189:0.476:2	./.	./.	./.
chr10	105177645	rs11598673	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:32:13:0.538:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	105182764	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:35:194:0.021:2	./.	./.
chr10	105194086	rs2986014	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,14:32:21:0.667:2	./.	0/1:1,25:31:26:0.962:2	./.	./.	./.	0/1:10,13:32:23:0.565:2	0/1:21,13:31:34:0.382:2
chr10	105205302	rs7831	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,47:31:89:0.528:2	./.	0/1:0,78:31:78:1.00:2	./.	./.	./.	0/1:30,49:32:79:0.620:2	0/1:52,34:32:86:0.395:2
chr10	105218252	rs2986017	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:28:44:1.00:2	0/1:0,27:28:27:1.00:2	0/1:0,3:28:3:1.00:2	0/1:18,12:25:30:0.400:2	./.	0/1:1,17:26:18:0.944:2	0/1:1,8:27:9:0.889:2	0/1:14,7:25:21:0.333:2	0/1:15,17:30:32:0.531:2	0/1:0,15:25:15:1.00:2	0/1:9,7:29:16:0.438:2
chr10	105218254	rs4918016	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,42:28:44:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,3:30:3:1.00:2	./.	./.	./.	./.	0/1:15,7:29:22:0.318:2	0/1:15,17:30:32:0.531:2	0/1:7,8:25:15:0.533:2	./.
chr10	105218359	rs2986018	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:30:86:1.00:2	0/1:0,57:29:57:1.00:2	0/1:3,9:29:12:0.750:2	0/1:69,47:31:116:0.405:2	./.	0/1:1,103:30:105:0.990:2	0/1:1,77:31:78:0.987:2	0/1:72,57:29:129:0.442:2	0/1:73,53:31:126:0.421:2	0/1:0,80:30:80:1.00:2	0/1:51,28:30:79:0.354:2
chr10	105233110	rs2986035	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:29:34:1.00:2	0/1:0,17:30:17:1.00:2	0/1:2,4:23:6:0.667:2	0/1:16,20:29:36:0.556:2	./.	0/1:0,73:28:73:1.00:2	0/1:2,32:29:34:0.941:2	0/1:33,22:30:55:0.400:2	0/1:0,54:30:54:1.00:2	0/1:0,37:29:37:1.00:2	0/1:14,28:28:43:0.667:2
chr10	105350066	rs138760268	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:33:137:0.029:2	./.	./.	./.	./.	./.
chr10	105361816	rs4918031	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,38:33:40:0.950:2	0/1:0,36:32:36:1.00:2	0/1:5,3:33:8:0.375:2	0/1:26,37:32:63:0.587:2	0/1:0,67:31:67:1.00:2	0/1:29,35:31:65:0.547:2	0/1:0,73:33:73:1.00:2	0/1:0,77:32:77:1.00:2	0/1:30,43:34:73:0.589:2	0/1:0,48:32:48:1.00:2	0/1:19,33:33:52:0.635:2
chr10	105362104	rs11191741	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,5:31:17:0.294:2	./.	0/1:56,47:31:103:0.456:2	0/1:57,45:30:102:0.441:2	0/1:2,76:31:78:0.974:2	0/1:71,49:31:120:0.408:2	./.	0/1:44,30:32:74:0.405:2	./.
chr10	105362209	rs4917396	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,109:32:109:1.00:2	0/1:0,77:32:77:1.00:2	0/1:9,10:33:19:0.526:2	0/1:103,79:32:182:0.434:2	0/1:95,98:32:193:0.508:2	0/1:87,76:32:163:0.466:2	0/1:0,182:32:182:1.00:2	0/1:1,175:32:176:0.994:2	0/1:89,84:33:173:0.486:2	0/1:0,150:32:150:1.00:2	0/1:72,69:33:141:0.489:2
chr10	105363289	rs3740471	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,10:25:10:1.00:2	0/1:0,18:29:18:1.00:2	./.	0/1:16,9:28:25:0.360:2	./.	./.	./.	0/1:25,23:30:48:0.479:2	./.	./.	0/1:10,8:30:18:0.444:2
chr10	105657316	rs10786775	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,51:33:51:1.00:2	0/1:0,57:33:57:1.00:2	./.	0/1:65,44:33:109:0.404:2	0/1:0,106:33:106:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,85:33:85:1.00:2	0/1:3,108:32:111:0.973:2	0/1:53,48:34:101:0.475:2	0/1:0,63:33:63:1.00:2	./.
chr10	105657363	rs11191853	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,23:29:69:0.333:2	0/1:39,25:29:64:0.391:2	0/1:41,26:30:67:0.388:2	./.	./.	./.	./.
chr10	105659826	rs2487999	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,190:31:190:1.00:2	0/1:0,101:31:101:1.00:2	0/1:0,35:30:35:1.00:2	0/1:107,92:31:199:0.462:2	0/1:0,132:31:132:1.00:2	0/1:0,193:30:193:1.00:2	0/1:1,183:31:184:0.995:2	0/1:1,193:30:194:0.995:2	0/1:101,94:31:195:0.482:2	0/1:0,151:31:151:1.00:2	./.
chr10	105758670	rs10883960	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:3,66:32:69:0.957:2	0/1:0,32:32:32:1.00:2	./.	0/1:41,44:32:85:0.518:2	./.	./.	0/1:43,31:32:74:0.419:2	0/1:56,59:32:115:0.513:2	0/1:49,51:32:100:0.510:2	./.	0/1:1,141:32:142:0.993:2
chr10	105762591	rs805657	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,19:29:37:0.514:2	./.	0/1:21,10:30:31:0.323:2	./.
chr10	105763026	rs3740469	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:2,22:32:24:0.917:2	0/1:0,9:31:9:1.00:2	./.	0/1:5,12:31:17:0.706:2	./.	./.	0/1:11,4:32:15:0.267:2	0/1:13,8:26:21:0.381:2	0/1:14,21:33:35:0.600:2	./.	0/1:0,26:31:26:1.00:2
chr10	105765745	rs805662	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,27:33:47:0.574:2	./.
chr10	105793750	rs17116350	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:2,92:31:94:0.979:2	0/1:0,54:31:54:1.00:2	./.	0/1:73,63:32:136:0.463:2	./.	./.	0/1:104,78:32:182:0.429:2	0/1:79,86:32:165:0.521:2	0/1:81,72:33:153:0.471:2	./.	0/1:0,118:31:118:1.00:2
chr10	105796819	rs2476958	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:32:27:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,50:32:50:1.00:2
chr10	105798872	rs2274100	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,34:30:34:1.00:2	0/1:0,12:29:12:1.00:2	./.	0/1:0,53:29:53:1.00:2	0/1:1,29:29:30:0.967:2	0/1:0,32:30:32:1.00:2	0/1:0,36:28:36:1.00:2	0/1:0,36:28:36:1.00:2	0/1:0,45:29:45:1.00:2	0/1:32,15:26:47:0.319:2	0/1:1,58:29:59:0.983:2
chr10	105799216	rs2296219	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,121:32:121:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,134:31:134:1.00:2	0/1:2,111:31:113:0.982:2	0/1:0,151:31:151:1.00:2	0/1:0,164:31:164:1.00:2	0/1:0,115:32:115:1.00:2	0/1:1,126:32:127:0.992:2	0/1:73,70:32:143:0.490:2	0/1:0,130:32:130:1.00:2
chr10	105801230	rs41290934	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,11:31:20:0.550:2	./.	./.	./.	./.	./.	./.	./.
chr10	105801253	rs4918079	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:31:19:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,3:24:3:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,44:30:44:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,39:31:39:1.00:2	0/1:14,14:31:28:0.500:2	0/1:0,51:32:51:1.00:2
chr10	105805497	rs813944	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	0/1:0,15:31:15:1.00:2	0/1:0,28:30:28:1.00:2	0/1:12,8:30:21:0.400:2	0/1:28,15:29:43:0.349:2	0/1:27,19:32:46:0.413:2	0/1:13,24:30:37:0.649:2	./.
chr10	105810400	rs805722	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,99:32:103:0.961:2	0/1:0,44:32:44:1.00:2	0/1:9,13:32:22:0.591:2	0/1:53,52:32:105:0.495:2	0/1:1,91:32:92:0.989:2	0/1:0,121:32:121:1.00:2	0/1:2,108:33:110:0.982:2	0/1:4,134:33:138:0.971:2	0/1:91,46:33:137:0.336:2	0/1:63,49:32:112:0.438:2	0/1:0,97:33:97:1.00:2
chr10	105811218	rs12260615	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,83:30:166:0.500:2	./.	0/1:90,96:30:186:0.516:2	0/1:81,88:31:169:0.521:2	0/1:107,73:30:180:0.406:2	./.
chr10	105815116	rs17821926	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,42:31:75:0.560:2	./.	./.	0/1:42,35:31:77:0.455:2	0/1:48,39:32:87:0.448:2	./.	./.	0/1:0,94:32:94:1.00:2
chr10	105816916	rs805698	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:33:69:1.00:2	0/1:1,38:33:39:0.974:2	0/1:0,15:32:15:1.00:2	0/1:0,122:33:122:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,151:32:151:1.00:2	0/1:0,130:33:130:1.00:2	0/1:0,181:32:181:1.00:2	0/1:0,96:33:96:1.00:2	0/1:0,94:33:94:1.00:2	0/1:0,104:33:104:1.00:2
chr10	105817891	rs11191910	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,5:30:11:0.455:2	0/1:28,32:32:60:0.533:2	./.	./.	./.	./.	0/1:36,42:34:78:0.538:2	0/1:37,21:33:58:0.362:2	./.
chr10	105819956	rs805701	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,171:31:171:1.00:2	0/1:0,134:32:134:1.00:2	0/1:23,18:32:41:0.439:2	0/1:100,76:31:176:0.432:2	0/1:1,165:32:166:0.994:2	0/1:96,85:31:181:0.470:2	0/1:0,172:32:172:1.00:2	0/1:100,71:32:171:0.415:2	0/1:180,5:32:185:0.027:2	./.	0/1:0,181:32:181:1.00:2
chr10	105824333	rs805708	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,96:31:97:0.990:2	0/1:2,56:31:58:0.966:2	0/1:5,3:32:8:0.375:2	0/1:59,45:31:104:0.433:2	0/1:0,100:30:100:1.00:2	0/1:59,49:30:109:0.454:2	0/1:0,90:31:90:1.00:2	0/1:62,62:31:124:0.500:2	./.	./.	0/1:1,70:31:71:0.986:2
chr10	105830191	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,41:32:88:0.466:2	./.	./.	./.	./.	./.	./.	./.
chr10	105830279	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:29:70:0.057:2	./.	./.	./.
chr10	105882765	rs10786783	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,6:31:11:0.545:2	./.	0/1:21,9:31:30:0.300:2	0/1:8,12:33:20:0.600:2	0/1:5,7:28:12:0.583:2	./.
chr10	105927460	rs17750886	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,16:32:39:0.410:2	0/1:23,8:32:31:0.258:2	./.	./.
chr10	105944815	rs145800519	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,50:31:113:0.442:2	./.	./.
chr10	105957714	rs10883979	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:32:6:1.00:2	0/1:69,90:33:159:0.566:2	./.	./.	0/1:56,36:32:92:0.391:2	./.	./.	./.	./.
chr10	105963553	rs11191947	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,11:31:22:0.500:2	./.	./.	0/1:8,8:30:16:0.500:2	./.	./.	./.	./.
chr10	105971911	rs117768807	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:30:9:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	106019482	rs146967406	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:32:110:0.036:2	./.	./.	./.
chr10	106022789	rs4925	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,20:32:41:0.488:2	./.	./.	./.	./.	0/1:29,23:33:52:0.442:2	./.	0/1:0,28:32:28:1.00:2
chr10	106027059	rs11509438	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,30:32:72:0.417:2	./.	./.	./.	./.
chr10	106039185	rs156697	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,6:34:12:0.500:2	0/1:32,26:33:58:0.448:2	./.	./.	0/1:52,55:32:107:0.514:2	./.	0/1:43,43:34:86:0.500:2	./.	0/1:1,74:33:75:0.987:2
chr10	106074338	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,4:34:82:0.049:2	./.	./.	./.	./.	./.	./.	./.
chr10	106074970	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:34:102:0.039:2	./.	./.
chr10	106075081	rs34043167	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,56:31:56:1.00:2	0/1:1,43:31:44:0.977:2	./.	./.	./.	./.	./.	0/1:40,41:29:81:0.506:2	./.	./.	./.
chr10	106075216	rs376948772	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,31:30:101:0.307:2	./.	./.	./.	./.	./.	./.	./.
chr10	106075649	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,5:26:107:0.047:2	./.	./.	./.
chr10	106075752	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,4:33:99:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr10	106118265	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,37:32:74:0.500:2
chr10	106152111	rs11192036	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,9:32:21:0.429:2	./.	./.	0/1:16,19:32:35:0.543:2	0/1:9,14:31:23:0.609:2	./.	./.	0/1:14,10:30:24:0.417:2
chr10	106153199	rs150206828	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,44:33:77:0.571:2
chr10	106401517	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.
chr10	106602537	rs41317264	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:16,12:31:28:0.429:2	0/1:6,6:32:12:0.500:2	./.	0/1:14,20:31:34:0.588:2	./.	./.	./.	./.	./.	./.	./.
chr10	106907440	rs791125	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,132:31:134:0.992:2	0/1:0,91:31:91:1.00:2	./.	0/1:84,105:31:189:0.556:2	0/1:0,136:31:136:1.00:2	0/1:100,82:31:182:0.451:2	0/1:101,91:32:192:0.474:2	0/1:86,83:31:169:0.491:2	0/1:3,190:32:193:0.984:2	0/1:74,63:32:137:0.460:2	0/1:62,81:32:143:0.566:2
chr10	106982952	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:34:192:0.021:2	./.	./.	./.
chr10	108367020	rs7082289	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,27:33:53:0.509:2	0/1:19,10:32:29:0.345:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	108380213	rs4917481	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:50,48:32:98:0.490:2	0/1:23,25:32:48:0.521:2	./.	./.	./.	./.	./.	0/1:90,66:31:156:0.423:2	./.	0/1:57,61:32:118:0.517:2	./.
chr10	108389111	rs3802553	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:33,54:31:87:0.621:2	0/1:20,12:31:32:0.375:2	./.	./.	./.	./.	./.	./.	./.	0/1:48,28:31:76:0.368:2	./.
chr10	111637635	rs2273740	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,26:32:53:0.491:2	0/1:27,9:33:36:0.250:2	./.	0/1:26,24:32:50:0.480:2	./.	./.	0/1:25,24:33:49:0.490:2
chr10	111987960	rs61745504	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:29:5:0.800:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	112004577	rs74157243	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,10:16:43:0.233:2	./.	./.	./.	./.	0/1:40,6:18:46:0.130:2	0/1:46,6:18:52:0.115:2	./.	0/1:40,10:16:50:0.200:2	0/1:54,15:17:69:0.217:2	./.
chr10	112004579	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,14:14:91:0.154:2
chr10	112266771	rs1889567	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,77:32:77:1.00:2	0/1:0,56:32:56:1.00:2	0/1:6,6:31:12:0.500:2	./.	./.	0/1:65,55:31:120:0.458:2	0/1:80,51:32:131:0.389:2	0/1:62,52:32:114:0.456:2	0/1:0,103:33:103:1.00:2	./.	0/1:68,51:32:119:0.429:2
chr10	112266822	rs1889566	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:31:44:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,88:30:88:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,76:31:76:1.00:2	0/1:0,83:31:83:1.00:2	0/1:0,68:31:68:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,55:31:55:1.00:2
chr10	112266823	rs1889565	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:31:45:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,88:31:88:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,76:31:76:1.00:2	0/1:0,83:31:83:1.00:2	0/1:0,68:31:68:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,55:32:55:1.00:2
chr10	112266827	rs145865805	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,45:31:93:0.484:2	./.	./.	./.	./.	./.	./.	./.
chr10	112337235	rs146433240	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,28:31:69:0.406:2	./.	./.	./.	./.	./.	./.	./.
chr10	112338377	rs78663177	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,18:29:50:0.360:2	./.	./.	0/1:39,31:32:70:0.443:2	./.	./.
chr10	112349422	rs75323904	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,39:32:92:0.424:2	./.	./.	0/1:48,69:33:117:0.590:2	./.	./.
chr10	112356199	rs147404470	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,24:30:51:0.471:2	./.	./.	./.
chr10	112356294	rs371216768	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,17:32:30:0.567:2	0/1:4,3:32:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	112361870	rs2419565	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,109:30:109:1.00:2	0/1:0,71:30:71:1.00:2	0/1:1,8:29:9:0.889:2	0/1:0,149:30:149:1.00:2	0/1:0,93:30:93:1.00:2	0/1:0,131:30:131:1.00:2	0/1:0,73:29:73:1.00:2	0/1:0,146:30:146:1.00:2	0/1:0,174:30:174:1.00:2	0/1:1,132:30:133:0.992:2	0/1:0,155:30:155:1.00:2
chr10	112543134	rs61735272	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,70:30:187:0.374:2	./.	./.	./.	./.
chr10	112544634	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,52:30:99:0.525:2	./.	./.	./.	./.	./.
chr10	112572141	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,20:31:24:0.833:2	./.	./.	./.	./.	./.
chr10	112572458	rs1417635	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:31:19:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,32:31:32:1.00:2
chr10	112583294	rs116908219	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,14:31:38:0.368:2	./.	./.	./.	./.	./.	./.	./.
chr10	112595719	rs942077	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:33:32:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,44:33:44:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,42:34:42:1.00:2	0/1:0,42:33:43:1.00:2	0/1:0,49:32:49:1.00:2
chr10	112641053	rs7081726	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:32:25:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,47:34:47:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,50:32:50:1.00:2
chr10	112650360	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,4:32:133:0.030:2	./.	./.	./.	./.	./.	./.
chr10	112654238	rs41292602	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,9:33:30:0.300:2	./.	./.	./.	./.	./.	./.	./.
chr10	112838284	rs199783285	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,14:29:34:0.412:2	./.	./.	./.	./.	./.	./.
chr10	112839368	rs11195419	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,35:30:89:0.393:2	./.	./.	0/1:28,38:31:66:0.576:2	./.
chr10	112839579	rs553668	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:31:60:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,39:33:39:1.00:2	0/1:13,15:31:28:0.536:2	0/1:0,40:32:40:1.00:2	0/1:17,11:31:28:0.393:2	0/1:0,27:33:27:1.00:2	0/1:0,54:34:54:1.00:2	0/1:0,36:33:36:1.00:2	0/1:0,61:32:61:1.00:2
chr10	112839601	rs3750625	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,20:32:45:0.444:2	./.
chr10	112839756	rs41286894	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,66:30:134:0.493:2	./.
chr10	113917085	rs2254537	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,42:33:107:0.393:2	0/1:32,37:33:69:0.536:2	0/1:4,11:33:15:0.733:2	0/1:87,72:33:159:0.453:2	./.	0/1:43,56:33:99:0.566:2	0/1:0,144:33:144:1.00:2	0/1:2,123:33:125:0.984:2	0/1:0,133:34:133:1.00:2	0/1:0,118:33:118:1.00:2	0/1:0,105:33:105:1.00:2
chr10	113920465	rs2277207	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,57:32:123:0.463:2	0/1:51,42:32:93:0.452:2	0/1:18,5:33:23:0.217:2	0/1:105,71:31:176:0.403:2	./.	0/1:98,79:31:177:0.446:2	0/1:88,68:32:156:0.436:2	0/1:4,167:32:171:0.977:2	0/1:2,156:32:158:0.987:2	0/1:2,153:32:155:0.987:2	0/1:80,90:32:170:0.529:2
chr10	113921449	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,11:28:106:0.104:2	0/1:87,10:28:97:0.103:2	0/1:107,9:28:116:0.078:2	./.	./.	./.	./.
chr10	113921450	rs199856746	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:41,10:31:51:0.196:2	./.	./.	0/1:67,12:28:79:0.152:2	0/1:91,31:26:122:0.254:2	0/1:87,16:29:103:0.155:2	0/1:101,29:26:130:0.223:2	0/1:99,24:26:123:0.195:2	0/1:68,20:29:88:0.227:2	0/1:47,9:29:56:0.161:2	0/1:51,9:31:61:0.150:2
chr10	113926224	rs35019520	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,26:32:53:0.491:2	./.	./.	./.	./.
chr10	113935379	rs10787428	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,27:32:66:0.409:2	0/1:44,13:33:57:0.228:2	0/1:10,6:33:16:0.375:2	0/1:47,50:33:97:0.515:2	./.	0/1:50,53:32:103:0.515:2	0/1:89,45:33:134:0.336:2	0/1:1,131:33:132:0.992:2	0/1:0,84:34:84:1.00:2	0/1:0,78:32:78:1.00:2	0/1:26,23:31:49:0.469:2
chr10	113940329	rs2792751	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:11,13:28:24:0.542:2	0/1:13,15:28:28:0.536:2	./.	0/1:35,16:28:51:0.314:2	./.	0/1:33,18:28:51:0.353:2	0/1:1,32:29:33:0.970:2	0/1:0,47:29:47:1.00:2	0/1:0,41:28:41:1.00:2	0/1:0,35:29:35:1.00:2	0/1:0,63:28:63:1.00:2
chr10	114053546	rs726009	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:29:11:1.00:2	0/1:0,116:30:116:1.00:2	0/1:50,45:30:95:0.474:2	0/1:1,115:29:116:0.991:2	./.	./.	./.	0/1:57,40:30:97:0.412:2	0/1:48,58:29:106:0.547:2
chr10	114059303	rs41310278	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:31:10:0.300:2	./.	./.	./.	./.	./.	./.	./.	0/1:22,14:33:36:0.389:2
chr10	114061907	rs185314722	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,5:30:23:0.217:2	./.	./.	./.	./.	./.
chr10	114154752	rs146605626	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,28:32:60:0.467:2	./.
chr10	114154815	rs11195943	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,30:32:63:0.484:2	0/1:17,13:33:30:0.433:2	./.	./.	./.	0/1:50,46:32:96:0.479:2	0/1:64,49:33:113:0.434:2	0/1:82,55:33:138:0.401:2	./.	./.	./.
chr10	114169276	rs3736946	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,46:29:105:0.438:2	0/1:41,20:29:61:0.328:2	./.	./.	./.	0/1:54,47:28:101:0.465:2	0/1:54,43:28:97:0.443:2	0/1:50,72:29:122:0.590:2	./.	./.	./.
chr10	114186624	rs2256368	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,40:30:40:1.00:2	0/1:0,26:31:26:1.00:2	./.	0/1:0,28:30:28:1.00:2	0/1:20,7:31:27:0.259:2	0/1:0,25:30:25:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,27:31:27:1.00:2	0/1:32,20:31:52:0.385:2	0/1:0,24:30:24:1.00:2	0/1:0,41:30:41:1.00:2
chr10	114200355	rs2306159	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:32:7:1.00:2	0/1:46,43:32:89:0.483:2	0/1:0,58:31:58:1.00:2	./.	0/1:39,55:31:94:0.585:2	0/1:52,53:32:105:0.505:2	0/1:69,47:33:116:0.405:2	0/1:0,70:32:70:1.00:2	0/1:0,103:32:103:1.00:2
chr10	114427978	rs17353359	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:62,32:31:94:0.340:2	0/1:57,27:32:84:0.321:2	./.	./.	./.	./.	0/1:56,43:32:99:0.434:2	./.	./.	./.	./.
chr10	114710674	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:28:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	114849244	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,4:31:70:0.057:2	./.	./.	./.	./.	./.	./.	./.
chr10	114925369	rs77961654	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,44:29:77:0.571:2	./.	./.	./.	./.	./.
chr10	115334124	rs3740530	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,11:32:19:0.579:2	0/1:39,22:31:61:0.361:2	0/1:43,27:32:70:0.386:2	0/1:0,67:31:67:1.00:2	./.	./.	0/1:58,54:33:112:0.482:2	0/1:44,29:33:73:0.397:2	0/1:0,58:33:58:1.00:2
chr10	115341753	rs2245056	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:28,20:33:48:0.417:2	0/1:10,12:33:22:0.545:2	./.	0/1:20,19:32:39:0.487:2	./.	0/1:0,34:31:34:1.00:2	./.	0/1:19,23:31:42:0.548:2	0/1:9,14:32:23:0.609:2	0/1:18,10:29:28:0.357:2	0/1:18,11:31:29:0.379:2
chr10	115341846	rs2245058	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:8,6:29:14:0.429:2	0/1:3,5:30:8:0.625:2	./.	0/1:9,14:31:23:0.609:2	./.	0/1:0,9:30:9:1.00:2	./.	0/1:13,10:30:23:0.435:2	0/1:8,6:31:14:0.429:2	0/1:6,9:30:15:0.600:2	0/1:5,4:32:9:0.444:2
chr10	115344027	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:31:175:0.023:2	./.	./.	./.
chr10	115350388	rs11575691	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,15:31:34:0.441:2	0/1:17,23:32:40:0.575:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	115350597	rs1885434	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:58,51:32:109:0.468:2	0/1:39,33:32:72:0.458:2	./.	0/1:79,46:32:125:0.368:2	./.	0/1:0,118:32:118:1.00:2	./.	0/1:63,71:32:134:0.530:2	0/1:63,57:33:120:0.475:2	0/1:52,53:32:105:0.505:2	./.
chr10	115352005	rs11196389	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:25,26:29:51:0.510:2	0/1:21,5:30:26:0.192:2	./.	0/1:19,24:30:43:0.558:2	./.	./.	./.	./.	./.	0/1:25,19:30:44:0.432:2	./.
chr10	115370254	rs12243176	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:31,32:30:63:0.508:2	0/1:20,20:29:40:0.500:2	0/1:5,9:31:14:0.643:2	./.	0/1:62,50:30:112:0.446:2	0/1:2,119:30:121:0.983:2	./.	0/1:68,84:31:152:0.553:2	0/1:63,69:32:132:0.523:2	0/1:54,44:31:98:0.449:2	0/1:0,88:30:88:1.00:2
chr10	115370274	rs10749138	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:26,23:29:49:0.469:2	0/1:18,19:29:37:0.514:2	0/1:5,7:27:12:0.583:2	./.	0/1:51,39:27:90:0.433:2	0/1:2,97:28:99:0.980:2	./.	0/1:54,65:28:119:0.546:2	0/1:53,51:29:104:0.490:2	0/1:45,35:30:80:0.438:2	0/1:0,73:27:73:1.00:2
chr10	115372156	rs1539587	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,57:30:111:0.514:2
chr10	115374600	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:30:114:0.035:2	./.	./.	./.	./.
chr10	115374670	rs3121453	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,58:29:132:0.439:2	0/1:33,32:29:65:0.492:2	./.	./.	./.	0/1:2,98:30:100:0.980:2	./.	0/1:99,70:29:169:0.414:2	0/1:102,73:30:175:0.417:2	./.	./.
chr10	115375528	rs11196397	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:98,79:31:177:0.446:2	0/1:117,69:32:186:0.371:2	0/1:33,24:28:57:0.421:2	0/1:110,83:31:193:0.430:2	0/1:104,83:31:187:0.444:2	./.	./.	./.	./.	./.	0/1:1,175:31:177:0.994:2
chr10	115377290	rs77678145	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,22:31:49:0.449:2	./.
chr10	115381747	rs868738	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,96:33:188:0.511:2	0/1:95,76:32:171:0.444:2	./.	./.	./.	0/1:0,185:32:185:1.00:2	./.	0/1:106,80:32:186:0.430:2	0/1:93,96:34:189:0.508:2	0/1:95,86:33:181:0.475:2	./.
chr10	115389356	rs2286736	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,26:32:57:0.456:2	0/1:21,15:32:36:0.417:2	./.	./.	./.	0/1:25,43:31:69:0.632:2	0/1:36,44:31:80:0.550:2	0/1:41,61:32:102:0.598:2	./.	0/1:24,35:32:59:0.593:2	./.
chr10	115389366	rs2286735	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,30:31:63:0.476:2	0/1:27,17:31:44:0.386:2	./.	./.	./.	0/1:28,45:31:73:0.616:2	0/1:42,42:31:84:0.500:2	0/1:44,62:31:106:0.585:2	./.	0/1:25,35:31:60:0.583:2	./.
chr10	115392919	rs2270182	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,60:30:137:0.438:2	./.	0/1:73,60:31:133:0.451:2	0/1:78,76:32:154:0.494:2	./.	./.
chr10	115393929	rs3189030	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,41:32:86:0.477:2	0/1:28,14:32:42:0.333:2	0/1:5,6:32:11:0.545:2	0/1:66,66:31:132:0.500:2	0/1:100,55:31:155:0.355:2	./.	./.	./.	0/1:50,66:32:116:0.569:2	0/1:50,31:31:82:0.383:2	0/1:2,93:32:95:0.979:2
chr10	115405615	rs3127106	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:30:75:1.00:2	0/1:1,30:30:31:0.968:2	0/1:6,7:27:13:0.538:2	0/1:59,58:30:117:0.496:2	0/1:60,51:29:111:0.459:2	0/1:64,57:30:121:0.471:2	0/1:60,53:29:113:0.469:2	0/1:64,60:29:124:0.484:2	0/1:60,46:31:106:0.434:2	0/1:0,65:30:65:1.00:2	0/1:0,100:30:100:1.00:2
chr10	115405664	rs3121478	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:31:41:1.00:2	0/1:0,24:32:24:1.00:2	0/1:7,3:31:10:0.300:2	0/1:35,29:30:64:0.453:2	0/1:29,31:30:60:0.517:2	0/1:36,28:31:64:0.438:2	0/1:36,31:30:67:0.463:2	0/1:39,33:30:72:0.458:2	0/1:30,27:31:57:0.474:2	0/1:0,37:31:37:1.00:2	0/1:0,56:31:56:1.00:2
chr10	115409840	rs2275799	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,61:31:121:0.504:2	./.	0/1:102,58:31:160:0.363:2	0/1:86,61:32:147:0.415:2	./.	./.
chr10	115410234	rs2185913	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:92,98:32:190:0.516:2	0/1:68,61:32:129:0.473:2	0/1:13,20:32:33:0.606:2	0/1:94,87:33:181:0.481:2	0/1:100,82:33:182:0.451:2	./.	./.	./.	./.	./.	0/1:2,186:32:188:0.989:2
chr10	115411598	rs4918861	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,33:31:69:0.478:2	./.	0/1:63,43:32:106:0.406:2	0/1:46,36:32:82:0.439:2	./.	./.
chr10	115411614	rs2154028	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:30:63:1.00:2	0/1:0,43:30:43:1.00:2	0/1:6,4:32:10:0.400:2	0/1:39,45:29:84:0.536:2	0/1:58,45:29:103:0.437:2	0/1:0,71:29:71:1.00:2	0/1:59,45:28:104:0.433:2	0/1:0,102:29:102:1.00:2	0/1:1,77:30:78:0.987:2	0/1:0,81:30:81:1.00:2	0/1:0,79:28:79:1.00:2
chr10	115412793	rs3737322	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,52:31:108:0.481:2	./.	0/1:63,51:32:114:0.447:2	0/1:51,38:32:89:0.427:2	./.	./.
chr10	115417289	rs1891762	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:31:73:1.00:2	0/1:0,47:32:47:1.00:2	0/1:5,7:31:12:0.583:2	0/1:45,44:32:89:0.494:2	0/1:54,41:31:95:0.432:2	0/1:0,110:31:110:1.00:2	0/1:79,65:32:144:0.451:2	0/1:0,114:31:114:1.00:2	0/1:0,116:33:116:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,126:32:126:1.00:2
chr10	115422474	rs3127122	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,36:33:70:0.514:2	0/1:14,20:32:34:0.588:2	./.	./.	./.	0/1:2,65:31:67:0.970:2	./.	0/1:39,22:32:61:0.361:2	0/1:36,46:32:82:0.561:2	0/1:31,39:32:70:0.557:2	./.
chr10	115451781	rs12358524	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:119,4:31:123:0.033:2	./.	./.	./.	./.	./.	0/1:38,40:30:78:0.513:2
chr10	115457264	rs11555408	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:33:6:0.500:2	0/1:51,49:33:100:0.490:2	0/1:40,52:32:92:0.565:2	./.	0/1:37,46:33:83:0.554:2	./.	./.	./.	./.
chr10	115489152	rs2227310	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:20,23:33:43:0.535:2	0/1:15,10:32:25:0.400:2	./.	0/1:31,21:33:52:0.404:2	./.	./.	./.	./.	0/1:24,22:33:46:0.478:2	0/1:19,13:33:32:0.406:2	0/1:25,24:32:49:0.490:2
chr10	115489167	rs2227309	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:22,21:32:43:0.488:2	0/1:17,14:32:31:0.452:2	./.	0/1:35,26:32:61:0.426:2	./.	./.	./.	./.	./.	0/1:18,13:32:31:0.419:2	0/1:22,26:31:48:0.542:2
chr10	115525175	rs4631835	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,41:31:79:0.519:2	0/1:29,28:29:57:0.491:2	0/1:0,12:29:12:1.00:2	0/1:61,46:30:107:0.430:2	0/1:0,63:29:63:1.00:2	0/1:0,110:30:110:1.00:2	0/1:0,82:30:82:1.00:2	0/1:56,45:29:101:0.446:2	0/1:61,46:31:107:0.430:2	0/1:58,49:30:107:0.458:2	0/1:3,130:29:133:0.977:2
chr10	115526177	rs10885500	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,40:33:81:0.494:2	0/1:23,16:31:39:0.410:2	./.	./.	./.	0/1:43,32:31:75:0.427:2	./.	./.	0/1:61,47:33:108:0.435:2	./.	./.
chr10	115529576	rs41292632	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:32:8:1.00:2	0/1:21,27:32:48:0.563:2	0/1:0,17:31:17:1.00:2	0/1:24,22:31:46:0.478:2	0/1:0,28:32:28:1.00:2	./.	./.	./.	0/1:27,24:31:51:0.471:2
chr10	115535599	rs3750901	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,13:32:13:1.00:2	0/1:77,63:33:140:0.450:2	0/1:0,95:32:95:1.00:2	0/1:66,54:32:120:0.450:2	0/1:4,101:32:105:0.962:2	./.	./.	./.	0/1:75,79:32:154:0.513:2
chr10	115536895	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:34:72:0.056:2	./.	./.
chr10	115540411	rs11196483	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:29:4:1.00:2	0/1:33,20:31:53:0.377:2	0/1:1,35:29:36:0.972:2	0/1:26,12:29:38:0.316:2	0/1:0,40:31:40:1.00:2	0/1:42,21:30:63:0.333:2	./.	0/1:24,16:29:40:0.400:2	0/1:0,49:29:49:1.00:2
chr10	115609915	rs3750898	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:33:44:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,2:32:2:1.00:2	0/1:1,59:33:60:0.983:2	0/1:2,36:32:38:0.947:2	0/1:26,27:31:53:0.509:2	0/1:0,34:32:34:1.00:2	0/1:28,40:32:68:0.588:2	0/1:0,65:34:65:1.00:2	0/1:0,53:32:53:1.00:2	0/1:33,31:32:64:0.484:2
chr10	115612530	rs41292634	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,83:32:199:0.417:2	./.	./.	./.
chr10	115614740	rs17235038	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,60:32:148:0.405:2	./.	./.	./.
chr10	115614775	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:32:144:0.028:2	./.	./.	./.
chr10	115636660	rs184120553	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,8:28:34:0.235:2	./.	./.	./.	./.	./.	./.
chr10	115644040	rs7913176	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:21,30:31:51:0.588:2	0/1:13,9:31:22:0.409:2	./.	0/1:38,23:30:61:0.377:2	./.	./.	0/1:21,15:30:36:0.417:2	./.	0/1:45,27:32:72:0.375:2	0/1:30,15:29:45:0.333:2	0/1:45,22:31:67:0.328:2
chr10	115661591	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:32:173:0.023:2	./.	./.	./.	./.
chr10	115804036	rs1801252	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	0/1:10,3:30:13:0.231:2	./.	./.	./.	./.	./.
chr10	115804119	rs140442073	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,11:30:29:0.379:2	./.	./.	./.	./.
chr10	115805056	rs1801253	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,9:29:29:0.310:2	0/1:12,5:26:17:0.294:2	0/1:0,4:27:4:1.00:2	0/1:30,23:26:53:0.434:2	0/1:26,21:27:47:0.447:2	0/1:0,39:27:39:1.00:2	0/1:2,31:27:33:0.939:2	0/1:26,25:27:51:0.490:2	0/1:21,10:27:31:0.323:2	0/1:4,6:27:10:0.600:2	0/1:15,11:27:26:0.423:2
chr10	115805531	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,4:31:27:0.148:2	./.	./.	./.	./.
chr10	115805539	rs11196607	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,8:16:32:0.250:2	./.	./.	0/1:20,6:18:26:0.231:2	0/1:11,5:19:16:0.313:2	0/1:19,9:17:28:0.321:2	0/1:14,8:15:22:0.364:2	./.	./.	0/1:14,11:14:26:0.440:2	0/1:28,7:16:35:0.200:2
chr10	115805544	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,7:17:24:0.304:2	./.	0/1:18,10:16:29:0.357:2	0/1:17,10:14:27:0.370:2	./.	./.	0/1:13,9:13:22:0.409:2	0/1:21,7:16:28:0.250:2
chr10	115805549	rs377360766	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,8:12:27:0.296:2	0/1:14,10:11:24:0.417:2	./.	./.	0/1:11,9:10:20:0.450:2	./.
chr10	115805559	rs10536225	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,4:27:16:0.250:2	0/1:11,6:15:17:0.353:2	./.	./.	./.	./.
chr10	115805669	rs143711992	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,13:28:40:0.325:2	./.	./.	./.	./.
chr10	115894702	rs146555801	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,24:31:43:0.558:2	./.	./.	./.	./.
chr10	115910928	rs7095762	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:57,43:31:100:0.430:2	0/1:33,22:32:55:0.400:2	0/1:7,6:31:13:0.462:2	./.	0/1:1,82:30:83:0.988:2	./.	./.	./.	./.	0/1:0,72:31:72:1.00:2	./.
chr10	115922492	rs12782946	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:67,48:33:115:0.417:2	0/1:38,24:32:62:0.387:2	./.	./.	./.	./.	./.	./.	./.	0/1:75,62:32:138:0.453:2	./.
chr10	115922774	rs1061159	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:37,32:32:69:0.464:2	0/1:23,15:31:38:0.395:2	0/1:10,6:30:16:0.375:2	./.	0/1:1,45:30:46:0.978:2	./.	./.	./.	./.	0/1:0,61:30:62:1.00:2	./.
chr10	115933905	rs17091403	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,26:30:52:0.500:2	./.	./.	./.	./.	./.
chr10	115964481	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:31:46:0.087:2	./.	./.
chr10	115970639	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,4:30:86:0.047:2	./.	./.	./.	./.	./.	./.	./.
chr10	115985821	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:31:128:0.031:2	./.
chr10	115986953	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:33:183:0.022:2
chr10	116008497	rs9664945	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:88,77:31:165:0.467:2	0/1:44,36:30:80:0.450:2	0/1:12,10:30:22:0.455:2	./.	0/1:0,109:30:109:1.00:2	./.	./.	./.	./.	0/1:0,147:31:148:1.00:2	./.
chr10	116020974	rs71484937	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:67,45:28:112:0.402:2	0/1:33,29:28:62:0.468:2	./.	./.	./.	./.	./.	./.	./.	0/1:46,50:28:97:0.521:2	./.
chr10	116032519	rs597371	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:31:7:0.857:2	./.	0/1:0,62:31:62:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,65:32:65:1.00:2	0/1:39,25:31:64:0.391:2	./.	0/1:30,33:32:63:0.524:2	./.
chr10	116046147	rs74943198	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,14:30:33:0.424:2	./.	./.	./.	./.
chr10	116049297	rs141684486	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,21:29:44:0.477:2	./.	./.	./.	./.	./.
chr10	116050008	rs11196686	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,60:30:121:0.496:2	./.	./.	./.
chr10	116056991	rs17091542	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,27:28:57:0.474:2	./.	./.	./.	./.
chr10	116059095	rs41314501	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,46:31:104:0.442:2	./.	./.	./.	./.	0/1:43,41:32:84:0.488:2
chr10	116059994	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:32:97:0.041:2	./.	./.
chr10	116060266	rs62641718	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,36:32:83:0.434:2	./.	./.	./.	./.
chr10	116060387	rs2286396	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:32:39:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,10:32:10:1.00:2	0/1:2,52:33:54:0.963:2	0/1:1,65:33:66:0.985:2	0/1:0,66:32:66:1.00:2	0/1:35,45:31:80:0.563:2	0/1:56,32:32:88:0.364:2	0/1:2,56:33:58:0.966:2	0/1:0,47:32:47:1.00:2	0/1:42,18:31:60:0.300:2
chr10	116060427	rs2781806	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,13:31:48:0.271:2	./.	./.	./.	./.	./.	./.
chr10	116073696	rs3813722	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,102:30:103:0.990:2	0/1:1,71:31:72:0.986:2	0/1:14,6:30:20:0.300:2	0/1:3,184:31:188:0.984:2	0/1:103,87:31:190:0.458:2	0/1:0,193:31:193:1.00:2	0/1:0,194:31:194:1.00:2	0/1:2,189:31:191:0.990:2	0/1:114,78:32:192:0.406:2	0/1:1,141:31:142:0.993:2	0/1:100,59:31:159:0.371:2
chr10	116073801	rs621375	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:32:14:0.500:2	./.	0/1:77,77:31:154:0.500:2	./.	./.	./.	0/1:65,59:33:124:0.476:2	./.	0/1:56,47:31:103:0.456:2
chr10	116091629	rs117043677	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,27:33:69:0.397:2	./.	./.
chr10	116100461	rs41300231	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,34:30:93:0.366:2	./.	./.	./.	./.	./.	./.	./.
chr10	116164206	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:30:6:0.500:2	./.	./.	./.	./.	./.
chr10	116207696	rs145263500	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,98:31:194:0.505:2
chr10	116222839	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:31:83:0.048:2	./.
chr10	116245112	rs139090722	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:4,13:32:17:0.765:2	0/1:3,7:32:10:0.700:2	./.	0/1:19,13:32:32:0.406:2	./.	./.	./.	./.	./.	./.	./.
chr10	116307504	rs2247528	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,13:32:13:1.00:2	0/1:0,16:30:16:1.00:2	./.	0/1:13,8:27:21:0.381:2	0/1:4,14:27:18:0.778:2	0/1:0,12:30:12:1.00:2	0/1:13,3:32:16:0.188:2	0/1:0,8:29:8:1.00:2	0/1:2,7:31:9:0.778:2	0/1:0,18:30:18:1.00:2	0/1:7,8:28:15:0.533:2
chr10	116335246	rs985273	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,63:31:162:0.389:2	0/1:97,57:31:154:0.370:2	./.	./.
chr10	116417737	rs201341957	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,39:28:83:0.470:2	./.	./.	./.	./.	./.
chr10	116417874	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,62:32:122:0.508:2	./.	./.	./.	./.
chr10	116602805	rs17092491	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,82:32:184:0.446:2	./.	./.	./.
chr10	116615045	rs3180654	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,19:28:49:0.388:2	0/1:14,19:28:33:0.576:2	0/1:34,22:29:56:0.393:2	./.	./.	0/1:26,25:30:51:0.490:2	0/1:38,15:28:53:0.283:2	0/1:34,36:29:70:0.514:2
chr10	116659253	rs10885629	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,69:32:161:0.429:2	0/1:72,56:32:128:0.438:2	0/1:92,71:31:163:0.436:2	./.	0/1:1,161:32:162:0.994:2	0/1:101,77:34:178:0.433:2	0/1:66,60:33:126:0.476:2	0/1:85,89:31:174:0.511:2
chr10	116698112	rs199739741	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,7:16:41:0.175:2	0/1:34,11:12:46:0.244:2	0/1:31,10:15:42:0.244:2	./.
chr10	116719498	rs62623677	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,17:33:52:0.327:2	./.	./.
chr10	116719543	rs7099565	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,25:32:63:0.397:2	0/1:15,16:31:31:0.516:2	0/1:40,25:33:65:0.385:2	./.	0/1:28,24:32:52:0.462:2	0/1:46,19:32:65:0.292:2	0/1:44,26:31:70:0.371:2	0/1:39,31:33:70:0.443:2
chr10	116889272	rs77597486	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,14:32:34:0.412:2	./.	./.	./.	./.	./.	./.	0/1:90,81:33:171:0.474:2	./.
chr10	117040903	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,4:33:120:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr10	117040929	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,5:30:107:0.047:2	./.	./.	./.	./.
chr10	117075090	rs80279793	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,17:11:84:0.202:2	./.	0/1:108,33:10:142:0.234:2	0/1:82,10:14:93:0.109:2	./.	0/1:71,9:15:80:0.113:2
chr10	117075175	rs1953758	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:32:44:1.00:2	0/1:0,39:31:39:1.00:2	0/1:9,3:29:12:0.250:2	0/1:0,82:30:82:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,79:30:79:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,88:31:88:1.00:2	0/1:0,75:32:75:1.00:2	0/1:44,29:32:73:0.397:2	0/1:0,73:32:73:1.00:2
chr10	117226713	rs17093114	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,45:30:83:0.542:2	./.
chr10	117228794	rs10885721	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,46:29:85:0.541:2	0/1:28,18:28:46:0.391:2	./.	0/1:2,75:29:77:0.974:2	0/1:30,21:29:51:0.412:2	0/1:41,42:29:83:0.506:2	./.	0/1:1,81:29:82:0.988:2	0/1:50,45:29:95:0.474:2	0/1:47,30:29:77:0.390:2	0/1:57,50:30:107:0.467:2
chr10	117486763	rs2254619	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:5,6:31:11:0.545:2	./.	0/1:0,19:31:19:1.00:2	0/1:9,4:30:13:0.308:2	0/1:16,7:31:23:0.304:2	./.	0/1:5,9:30:14:0.643:2	0/1:8,6:29:14:0.429:2	./.	0/1:16,7:32:23:0.304:2
chr10	117849353	rs2072276	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,27:30:49:0.551:2	./.	./.	./.	./.	0/1:18,29:30:47:0.617:2	./.	./.
chr10	117884950	rs2245020	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,56:31:126:0.444:2	0/1:22,24:31:46:0.522:2	0/1:12,8:28:20:0.400:2	0/1:1,169:31:170:0.994:2	0/1:94,95:31:189:0.503:2	0/1:1,174:30:175:0.994:2	0/1:92,86:31:179:0.483:2	./.	0/1:112,78:32:190:0.411:2	0/1:74,68:30:142:0.479:2	0/1:88,71:31:159:0.447:2
chr10	118030415	rs8192662	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,42:31:96:0.438:2	./.	./.	./.	0/1:32,42:31:74:0.568:2	0/1:33,34:31:67:0.507:2
chr10	118228763	rs7077408	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,22:31:53:0.415:2	0/1:8,13:33:21:0.619:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	118231305	rs10510020	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:62,70:33:132:0.530:2	0/1:37,31:32:68:0.456:2	./.	./.	./.	./.	0/1:71,65:33:136:0.478:2	./.	./.	./.	./.
chr10	118231360	rs10736251	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:31:86:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,96:31:96:1.00:2	0/1:0,80:30:80:1.00:2	0/1:0,99:31:99:1.00:2	0/1:0,65:30:65:1.00:2	0/1:0,90:31:90:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,110:31:110:1.00:2	0/1:0,95:31:95:1.00:2
chr10	118231363	rs1897519	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,83:32:84:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,65:31:65:1.00:2	0/1:1,86:32:87:0.989:2	0/1:0,87:33:87:1.00:2	0/1:0,109:31:109:1.00:2	0/1:0,95:31:95:1.00:2
chr10	118313265	rs2915748	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,24:29:55:0.436:2	0/1:22,18:29:40:0.450:2	0/1:0,6:28:6:1.00:2	0/1:0,72:29:72:1.00:2	0/1:0,65:29:65:1.00:2	0/1:0,70:29:70:1.00:2	0/1:26,30:30:56:0.536:2	0/1:0,81:29:81:1.00:2	0/1:1,70:30:71:0.986:2	0/1:0,41:30:41:1.00:2	0/1:0,66:30:66:1.00:2
chr10	118315603	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,5:32:68:0.074:2	./.
chr10	118363642	rs3010501	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:33:82:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,4:34:4:1.00:2	0/1:49,33:32:82:0.402:2	0/1:0,57:32:57:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,46:33:46:1.00:2	0/1:50,35:32:85:0.412:2	0/1:59,32:34:91:0.352:2	0/1:1,61:33:62:0.984:2	0/1:47,39:33:86:0.453:2
chr10	118364967	rs2305204	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,26:32:79:0.329:2	./.	./.	./.	./.	./.	./.	./.
chr10	118368606	rs1049125	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:19,20:29:39:0.513:2	0/1:18,12:28:30:0.400:2	./.	0/1:19,28:28:47:0.596:2	./.	./.	0/1:32,20:30:52:0.385:2	./.	0/1:23,21:31:44:0.477:2	./.	0/1:29,30:30:59:0.508:2
chr10	118380511	rs3010502	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,107:32:107:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,122:32:122:1.00:2	0/1:0,137:32:137:1.00:2	0/1:0,142:32:142:1.00:2	0/1:0,133:32:133:1.00:2	0/1:0,98:32:98:1.00:2	0/1:0,121:32:121:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,135:32:135:1.00:2
chr10	118387282	rs11544712	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,4:34:11:0.364:2	0/1:4,4:32:8:0.500:2	./.	./.	0/1:0,4:34:4:1.00:2	./.	0/1:2,3:33:5:0.600:2
chr10	118397884	rs4751995	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,67:32:67:1.00:2	0/1:0,47:31:47:1.00:2	./.	0/1:29,40:32:69:0.580:2	./.	0/1:36,30:31:66:0.455:2	0/1:22,18:31:40:0.450:2	0/1:46,21:32:67:0.313:2	0/1:39,42:33:81:0.519:2	./.	0/1:1,89:32:90:0.989:2
chr10	118397894	rs4751996	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,72:32:72:1.00:2	0/1:0,51:32:51:1.00:2	./.	0/1:34,43:33:77:0.558:2	./.	0/1:37,35:31:72:0.486:2	0/1:22,23:32:45:0.511:2	0/1:52,23:32:75:0.307:2	0/1:46,47:32:93:0.505:2	./.	0/1:0,97:31:97:1.00:2
chr10	118397971	rs10885997	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,33:31:64:0.516:2	0/1:24,23:30:47:0.489:2	./.	./.	./.	0/1:38,40:30:78:0.513:2	0/1:19,26:31:45:0.578:2	0/1:46,32:31:78:0.410:2	0/1:53,46:31:99:0.465:2	./.	0/1:0,65:30:65:1.00:2
chr10	118404620	rs2301179	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,17:30:17:1.00:2	0/1:0,19:31:19:1.00:2	./.	0/1:13,16:30:29:0.552:2	./.	0/1:20,4:31:24:0.167:2	./.	0/1:14,12:32:26:0.462:2	0/1:17,7:31:24:0.292:2	./.	0/1:0,35:29:35:1.00:2
chr10	118434493	rs183824836	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,88:32:190:0.463:2	./.	./.	./.
chr10	118443411	rs371127167	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,6:24:75:0.080:2	./.	./.	./.	./.	./.	./.
chr10	118620459	rs11197835	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,49:33:108:0.454:2	0/1:40,31:32:71:0.437:2	0/1:12,3:32:15:0.200:2	0/1:0,127:32:127:1.00:2	0/1:1,115:32:116:0.991:2	0/1:2,128:32:130:0.985:2	./.	0/1:104,70:32:174:0.402:2	0/1:4,135:33:139:0.971:2	0/1:2,92:32:94:0.979:2	0/1:1,131:33:132:0.992:2
chr10	119003564	rs363387	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,23:31:55:0.418:2	./.	./.
chr10	119026498	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr10	119026566	rs363227	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:29:79:1.00:2	0/1:0,54:29:54:1.00:2	0/1:0,9:30:9:1.00:2	0/1:1,82:29:83:0.988:2	0/1:33,30:29:63:0.476:2	0/1:0,72:29:72:1.00:2	0/1:0,100:29:100:1.00:2	0/1:1,118:30:119:0.992:2	0/1:48,47:30:95:0.495:2	0/1:45,72:29:117:0.615:2	0/1:79,68:28:147:0.463:2
chr10	119043458	rs140922572	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,90:32:158:0.570:2	./.	./.	./.	./.	./.	./.	./.
chr10	119043554	rs363294	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,44:32:122:0.361:2	./.	./.	./.
chr10	119044126	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:196,4:33:200:0.020:2	./.	./.	./.
chr10	119044365	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:118,4:34:122:0.033:2	./.	./.	./.	./.	./.	./.
chr10	119133968	rs3814230	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,68:30:130:0.523:2	./.	0/1:73,53:30:126:0.421:2	./.	0/1:39,41:30:80:0.513:2	0/1:48,25:31:73:0.342:2	0/1:30,30:29:60:0.500:2
chr10	119134058	rs3814229	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,62:32:116:0.534:2	./.	0/1:59,55:33:114:0.482:2	./.	0/1:29,30:32:59:0.508:2	0/1:26,30:31:56:0.536:2	0/1:18,44:31:63:0.710:2
chr10	119134707	rs78645354	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:29:6:0.667:2	./.	0/1:4,5:31:9:0.556:2	./.	0/1:4,4:31:8:0.500:2	./.	./.	./.
chr10	119303012	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.
chr10	119307728	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,15:29:32:0.469:2	./.
chr10	119768551	rs7923321	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,97:32:97:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,14:32:14:1.00:2	0/1:3,139:31:142:0.979:2	0/1:1,94:31:95:0.989:2	0/1:0,131:31:131:1.00:2	0/1:1,81:31:82:0.988:2	0/1:1,155:32:156:0.994:2	0/1:2,144:33:146:0.986:2	0/1:0,102:32:102:1.00:2	0/1:0,164:32:164:1.00:2
chr10	119774577	rs141500760	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:33:8:0.375:2	0/1:18,15:33:33:0.455:2	./.	./.	./.	0/1:21,31:32:52:0.596:2	./.	./.	./.
chr10	120070427	rs4751651	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,22:30:22:1.00:2	0/1:0,12:32:12:1.00:2	./.	./.	0/1:6,7:29:13:0.538:2	0/1:1,20:31:21:0.952:2	0/1:14,12:31:26:0.462:2	0/1:0,27:30:27:1.00:2	./.	0/1:0,18:31:18:1.00:2	0/1:23,17:32:40:0.425:2
chr10	120070814	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,6:32:50:0.120:2	./.	./.	./.	./.	./.	./.	./.
chr10	120353843	rs8192524	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,3:30:5:0.600:2	./.	./.	./.	./.	./.	0/1:9,3:30:12:0.250:2	./.	0/1:8,4:32:12:0.333:2	0/1:8,7:32:15:0.467:2
chr10	120353910	rs1613448	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,4:31:4:1.00:2	0/1:0,2:31:2:1.00:2	./.	0/1:0,4:31:4:1.00:2	0/1:0,4:29:4:1.00:2	./.	./.	0/1:0,3:32:3:1.00:2	./.	0/1:0,7:32:7:1.00:2	./.
chr10	120354109	rs8192521	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,5:26:11:0.455:2	./.	./.	./.	./.
chr10	120354472	rs938700	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:24,14:32:38:0.368:2	0/1:18,19:31:37:0.514:2	./.	./.	./.	./.	./.	0/1:33,38:30:71:0.535:2	./.	0/1:30,28:31:58:0.483:2	0/1:14,29:29:43:0.674:2
chr10	120446114	rs12440	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:47,35:33:82:0.427:2	0/1:32,25:32:57:0.439:2	./.	./.	./.	./.	./.	0/1:62,46:31:108:0.426:2	0/1:59,48:33:107:0.449:2	./.	./.
chr10	120454726	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,6:29:87:0.069:2	./.	./.	./.
chr10	120790586	rs79664216	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	120791060	rs614465	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:33:86:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,45:33:45:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,75:33:75:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,77:33:77:1.00:2
chr10	120791826	rs117407828	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,28:32:51:0.549:2	./.	./.	./.	./.	./.
chr10	120791884	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,8:27:25:0.320:2	./.
chr10	120792039	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:32:59:0.068:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	120792684	rs546753	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,18:32:18:1.00:2	0/1:0,7:31:7:1.00:2	./.	0/1:0,11:33:11:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,16:32:16:1.00:2	0/1:1,10:32:11:0.909:2	0/1:0,18:33:18:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,23:31:23:1.00:2
chr10	120792703	rs546808	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,21:31:21:1.00:2	0/1:0,12:30:12:1.00:2	./.	0/1:0,17:29:17:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,23:30:23:1.00:2	0/1:3,14:31:17:0.824:2	0/1:0,38:32:38:1.00:2	0/1:0,17:29:17:1.00:2	0/1:0,44:31:44:1.00:2
chr10	120793603	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:31:129:0.031:2	./.	./.	./.
chr10	120828969	rs7908387	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:29:72:1.00:2	0/1:0,40:28:40:1.00:2	0/1:2,4:30:6:0.667:2	0/1:0,72:29:72:1.00:2	0/1:0,52:28:52:1.00:2	0/1:1,78:29:79:0.987:2	0/1:0,57:29:57:1.00:2	0/1:2,77:29:79:0.975:2	0/1:0,104:30:104:1.00:2	0/1:0,66:29:66:1.00:2	0/1:0,103:28:103:1.00:2
chr10	120863670	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:28:42:0.095:2	./.	0/1:37,4:29:41:0.098:2	./.	./.
chr10	120896027	rs11198799	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,147:32:186:0.790:2	0/1:40,157:32:197:0.797:2	0/1:13,40:31:53:0.755:2	0/1:31,148:32:179:0.827:2	0/1:28,165:32:193:0.855:2	0/1:21,166:32:187:0.888:2	0/1:36,151:32:187:0.807:2	0/1:40,156:32:196:0.796:2	0/1:23,171:33:194:0.881:2	0/1:37,152:32:189:0.804:2	0/1:32,148:33:182:0.822:2
chr10	120917445	rs2275111	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,11:32:28:0.393:2	./.	0/1:61,43:31:104:0.413:2	./.	0/1:0,88:32:88:1.00:2	0/1:52,53:32:105:0.505:2	./.	./.	0/1:60,41:32:101:0.406:2
chr10	120919246	rs2181118	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:30:73:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,122:29:122:1.00:2	0/1:0,147:29:147:1.00:2	0/1:0,127:30:128:1.00:2	0/1:0,135:29:135:1.00:2	0/1:0,137:29:137:1.00:2	0/1:0,95:29:95:1.00:2	0/1:0,83:29:83:1.00:2	0/1:0,91:29:91:1.00:2
chr10	120920588	rs10749291	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:32:6:0.500:2	./.	0/1:8,9:33:17:0.529:2	./.	0/1:0,11:32:11:1.00:2	0/1:16,15:33:31:0.484:2	./.	./.	0/1:9,33:33:42:0.786:2
chr10	120933324	rs3758609	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,26:33:39:0.667:2	0/1:9,22:31:31:0.710:2	0/1:0,7:31:7:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,42:31:42:1.00:2	0/1:1,45:32:46:0.978:2	0/1:0,70:32:70:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,59:32:60:1.00:2
chr10	120936550	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,5:31:61:0.082:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	121093277	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,26:33:38:0.684:2	./.	./.	./.
chr10	121189967	rs184367494	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,9:31:18:0.500:2	./.
chr10	121196335	rs2230349	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,39:31:109:0.358:2	./.	./.	./.
chr10	121199310	rs1109490	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:24,16:28:40:0.400:2	0/1:8,17:28:25:0.680:2	0/1:4,4:29:8:0.500:2	./.	0/1:9,12:27:21:0.571:2	0/1:28,17:28:45:0.378:2	0/1:26,15:28:41:0.366:2	./.	./.	./.	./.
chr10	121212263	rs149159651	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,35:32:71:0.493:2
chr10	121275099	rs11550215	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,70:31:158:0.446:2	./.	0/1:84,90:32:174:0.517:2	./.	./.
chr10	121296029	rs11199005	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,30:29:55:0.545:2	./.	0/1:28,32:28:61:0.533:2	./.	./.
chr10	121336171	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:33:152:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	121336248	rs12356865	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:32:8:0.500:2	./.	./.	./.	0/1:54,38:33:92:0.413:2	./.	./.	./.	./.
chr10	121429633	rs2234962	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:11,14:27:25:0.560:2	0/1:17,11:28:28:0.393:2	./.	0/1:25,12:29:37:0.324:2	./.	0/1:22,9:27:31:0.290:2	./.	./.	./.	0/1:11,14:29:25:0.560:2	./.
chr10	121429645	rs61756328	G	A,T	.	PASS	AC=1,1;AF=0.167,0.167;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/2:28:38:0.105:2	0/1:30:25:0.280:2	./.	./.	./.	./.	./.
chr10	121436068	rs3858339	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,7:29:31:0.226:2	./.	0/1:11,17:30:28:0.607:2	./.	./.	./.	0/1:16,20:30:36:0.556:2
chr10	121436286	rs3858340	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,7:31:20:0.350:2	./.	0/1:8,8:32:16:0.500:2	./.	./.	./.	0/1:7,9:33:16:0.563:2
chr10	121436362	rs196295	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:33:32:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,34:30:34:1.00:2	0/1:14,9:32:23:0.391:2	0/1:21,19:31:40:0.475:2	0/1:1,44:32:45:0.978:2	0/1:34,25:32:59:0.424:2	0/1:0,26:32:26:1.00:2	0/1:1,25:32:26:0.962:2	0/1:0,34:30:34:1.00:2
chr10	121551581	rs2289306	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,40:32:94:0.426:2	0/1:42,31:32:73:0.425:2	./.	./.	./.	0/1:65,58:31:123:0.472:2	0/1:54,37:31:91:0.407:2	0/1:69,39:32:108:0.361:2	0/1:56,58:32:114:0.509:2	0/1:0,63:32:63:1.00:2	0/1:76,52:31:128:0.406:2
chr10	121556411	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,6:32:78:0.077:2	./.	./.	./.	./.	./.	./.	./.
chr10	121556976	rs145230512	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,17:31:39:0.436:2	0/1:21,10:30:31:0.323:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	121557047	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,4:30:114:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr10	121565883	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,21:31:54:0.389:2
chr10	121579040	rs17099318	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,83:31:151:0.550:2	./.	./.	./.
chr10	121586827	rs56055506	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,24:33:39:0.615:2	0/1:16,9:32:25:0.360:2	./.	./.	./.	0/1:21,18:31:39:0.462:2	./.	0/1:26,22:32:48:0.458:2	./.	0/1:16,18:32:34:0.529:2	./.
chr10	121586882	rs3188055	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,21:32:44:0.477:2	./.	0/1:28,42:33:70:0.600:2	0/1:36,30:34:66:0.455:2	0/1:20,20:33:40:0.500:2	0/1:35,18:33:53:0.340:2
chr10	121596498	rs34118671	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,20:32:43:0.465:2	0/1:26,20:32:46:0.435:2	./.	./.	./.	0/1:34,40:31:74:0.541:2	./.	./.	./.	0/1:43,33:31:76:0.434:2	./.
chr10	121598173	rs12772291	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,28:33:67:0.418:2	./.
chr10	121618382	rs34469768	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,12:32:30:0.400:2	./.	./.	./.
chr10	121632073	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.
chr10	121663664	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,5:29:130:0.038:2	./.	./.	./.
chr10	121671651	rs17099368	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,50:28:121:0.413:2	./.	./.	./.
chr10	121679013	rs2475298	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,28:33:28:1.00:2	0/1:0,11:33:11:1.00:2	./.	0/1:0,15:33:15:1.00:2	0/1:0,21:32:21:1.00:2	0/1:14,12:32:26:0.462:2	0/1:0,21:32:21:1.00:2	0/1:0,22:33:22:1.00:2	0/1:14,16:34:30:0.533:2	0/1:8,8:33:16:0.500:2	0/1:22,10:33:32:0.313:2
chr10	121685559	rs12771873	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,10:32:43:0.233:2	./.	./.	./.
chr10	121685654	rs202164600	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,94:33:190:0.495:2	./.	./.
chr10	121692617	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,4:32:57:0.070:2	./.	./.	./.	./.	./.	./.	./.
chr10	121693246	rs34826964	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,38:30:57:0.667:2	./.	./.	./.
chr10	122216862	rs67319648	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,4:31:16:0.250:2	0/1:59,4:29:63:0.063:2	./.	./.	0/1:44,26:29:70:0.371:2	./.	0/1:32,25:32:57:0.439:2	./.	0/1:21,14:31:35:0.400:2
chr10	122348969	rs1047369	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,22:31:54:0.407:2	0/1:17,19:32:36:0.528:2	./.	./.	./.	./.	./.	./.	0/1:1,57:32:58:0.983:2	./.	./.
chr10	122358342	rs4752442	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:31:45:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,62:31:62:1.00:2
chr10	122358463	rs2901257	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,24:32:59:0.407:2	0/1:20,15:32:35:0.429:2	./.	0/1:0,69:32:69:1.00:2	0/1:0,73:32:73:1.00:2	./.	0/1:4,97:32:101:0.960:2	0/1:56,33:32:89:0.371:2	0/1:57,38:33:95:0.400:2	0/1:29,44:32:73:0.603:2	0/1:0,90:33:90:1.00:2
chr10	122358604	rs56171222	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:26,26:32:52:0.500:2	0/1:13,7:33:20:0.350:2	./.	./.	0/1:44,45:31:89:0.506:2	./.	./.	./.	./.	./.	./.
chr10	122358657	rs3067585	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,28:27:30:1.00:2	./.	./.	0/1:0,34:28:36:1.00:2	./.	./.	0/1:0,16:28:18:1.00:2	./.
chr10	122359040	rs11594669	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:32,33:32:65:0.508:2	0/1:23,19:31:42:0.452:2	0/1:3,3:32:6:0.500:2	./.	./.	0/1:44,22:32:66:0.333:2	./.	./.	0/1:40,21:33:61:0.344:2	0/1:35,23:33:58:0.397:2	./.
chr10	122359344	rs9943454	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:71,67:33:138:0.486:2	0/1:41,23:33:64:0.359:2	./.	0/1:56,57:32:113:0.504:2	./.	0/1:68,57:32:125:0.456:2	./.	0/1:87,43:33:130:0.331:2	./.	./.	./.
chr10	122359580	rs10886722	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:41,32:32:73:0.438:2	0/1:29,26:32:55:0.473:2	0/1:4,4:31:8:0.500:2	./.	./.	0/1:47,39:31:86:0.453:2	./.	./.	0/1:48,51:32:99:0.515:2	0/1:36,29:32:65:0.446:2	./.
chr10	122610930	rs112459242	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,17:32:39:0.436:2	0/1:18,24:31:42:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	122619740	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,30:31:59:0.508:2	./.	./.
chr10	122624679	rs10886789	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,9:33:10:0.900:2	./.	./.	./.	./.	0/1:52,45:32:97:0.464:2	0/1:54,44:33:98:0.449:2	0/1:30,31:33:61:0.508:2	./.
chr10	122626682	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,4:32:73:0.055:2	./.	./.	./.	./.	./.	./.	./.
chr10	122645376	rs7899928	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,17:29:17:1.00:2	./.	./.	./.	./.	0/1:32,57:30:89:0.640:2	0/1:36,34:32:70:0.486:2	0/1:22,29:31:51:0.569:2	./.
chr10	122649482	rs2289337	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,28:30:28:1.00:2	0/1:18,42:31:60:0.700:2	0/1:28,11:31:39:0.282:2	0/1:31,25:31:56:0.446:2	./.	./.	./.
chr10	122663585	rs1652727	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:9,13:29:22:0.591:2	0/1:3,6:30:9:0.667:2	0/1:0,4:29:4:1.00:2	./.	0/1:0,28:30:28:1.00:2	0/1:0,13:30:13:1.00:2	0/1:6,5:28:11:0.455:2	0/1:2,20:31:22:0.909:2	0/1:24,7:33:31:0.226:2	0/1:8,13:31:21:0.619:2	./.
chr10	122665459	rs3740307	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,23:33:56:0.411:2	./.
chr10	123239112	rs1047057	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,23:32:50:0.460:2	0/1:20,5:31:25:0.200:2	0/1:0,7:32:7:1.00:2	0/1:30,18:31:48:0.375:2	./.	0/1:0,64:31:64:1.00:2	0/1:38,23:32:61:0.377:2	0/1:0,65:31:65:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,61:31:61:1.00:2	0/1:37,27:31:64:0.422:2
chr10	123239187	rs4647917	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,13:30:31:0.419:2	0/1:4,10:32:14:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	123243238	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:32:84:0.048:2	./.	./.	./.	./.	./.
chr10	123247563	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:119,4:31:123:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr10	123256161	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,3:33:55:0.055:2	./.	./.
chr10	123274672	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,16:30:183:0.087:2
chr10	123298158	rs1047100	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:33:68:1.00:2	0/1:1,58:32:59:0.983:2	0/1:11,10:34:21:0.476:2	0/1:0,96:33:96:1.00:2	0/1:80,53:32:133:0.398:2	0/1:0,119:32:119:1.00:2	0/1:0,119:33:119:1.00:2	0/1:1,149:32:151:0.993:2	0/1:0,111:33:111:1.00:2	0/1:59,53:32:112:0.473:2	0/1:55,63:32:118:0.534:2
chr10	123310871	rs755793	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,32:29:57:0.561:2	0/1:21,11:28:32:0.344:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	123549691	rs35350755	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,26:30:66:0.394:2	0/1:15,14:30:29:0.483:2	0/1:5,6:30:11:0.545:2	0/1:37,21:28:58:0.362:2	0/1:2,39:29:41:0.951:2	0/1:0,50:30:50:1.00:2	0/1:36,16:29:52:0.308:2	0/1:2,65:30:67:0.970:2	0/1:37,43:29:80:0.538:2	0/1:46,25:30:71:0.352:2	0/1:1,76:29:77:0.987:2
chr10	123596254	rs4237536	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,18:30:33:0.545:2	0/1:16,17:29:33:0.515:2	0/1:0,6:30:6:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,42:30:42:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,40:30:40:1.00:2	0/1:0,67:30:67:1.00:2
chr10	123600713	rs144950702	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:28:9:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	123673339	rs10749435	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,22:33:53:0.415:2	0/1:15,14:32:29:0.483:2	0/1:0,3:33:3:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,25:34:25:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,63:34:63:1.00:2	0/1:0,41:33:41:1.00:2	0/1:0,63:33:64:1.00:2
chr10	123687456	rs79570924	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:6,3:31:9:0.333:2	0/1:2,4:32:6:0.667:2	./.	0/1:15,13:30:28:0.464:2	./.	./.	./.	./.	./.	./.	./.
chr10	123719928	rs41287994	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,62:32:131:0.473:2	./.	./.	./.	./.
chr10	123719929	rs12777180	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,62:32:154:0.403:2	./.	./.	./.	./.	./.
chr10	123730504	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,4:32:43:0.093:2	./.	./.	./.	./.	./.	./.	./.
chr10	123733511	rs10887034	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,60:34:60:1.00:2	./.	./.	./.	./.	0/1:44,23:34:67:0.343:2	./.	0/1:53,47:34:100:0.470:2
chr10	123810060	rs11200367	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,47:31:102:0.461:2	./.	./.	./.
chr10	123842402	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,3:31:30:0.100:2	./.
chr10	123842523	rs11200385	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:10,6:31:16:0.375:2	0/1:10,5:31:15:0.333:2	./.	./.	./.	./.	0/1:1,13:31:14:0.929:2	./.	./.	./.	./.
chr10	123842825	rs11816938	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,15:28:44:0.341:2	./.	0/1:23,18:29:41:0.439:2	./.	./.	./.
chr10	123843946	rs60531929	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,8:31:20:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	123844172	rs41288002	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,14:31:53:0.264:2	./.	./.	./.	./.	./.	./.
chr10	123844403	rs74901704	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,11:30:21:0.524:2	./.	./.	./.	./.	./.	./.	./.
chr10	123844503	rs10887063	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:12,12:32:24:0.500:2	0/1:7,6:32:13:0.462:2	./.	./.	./.	./.	0/1:12,5:31:17:0.294:2	./.	./.	./.	./.
chr10	123845211	rs11200387	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:16,7:29:25:0.304:2	0/1:6,5:30:11:0.455:2	./.	./.	./.	./.	0/1:11,23:30:34:0.676:2	./.	./.	./.	./.
chr10	123845322	rs7073433	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:29:29:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,19:29:19:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,29:30:29:1.00:2	0/1:1,33:31:34:0.971:2	0/1:1,31:30:32:0.969:2	0/1:0,26:30:26:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,25:31:25:1.00:2
chr10	123845897	rs1106992	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:13,9:33:22:0.409:2	0/1:8,9:32:17:0.529:2	./.	./.	./.	./.	0/1:0,41:32:41:1.00:2	./.	./.	./.	./.
chr10	123846288	rs4752642	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:19,25:31:44:0.568:2	0/1:8,15:31:23:0.652:2	./.	./.	./.	./.	0/1:1,65:30:66:0.985:2	./.	./.	./.	./.
chr10	123846485	rs4751871	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:15,12:33:27:0.444:2	0/1:8,11:33:19:0.579:2	./.	./.	./.	./.	0/1:1,45:32:46:0.978:2	./.	./.	./.	./.
chr10	123846490	rs7920896	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,26:31:44:0.591:2	./.	0/1:20,19:30:39:0.487:2	./.	./.	./.
chr10	123846860	rs11599291	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:28,27:32:55:0.491:2	0/1:19,13:33:32:0.406:2	./.	./.	./.	./.	0/1:0,75:33:75:1.00:2	./.	./.	./.	./.
chr10	123847178	rs116907408	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:32:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	123847355	rs10788237	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:13,7:32:20:0.350:2	0/1:11,7:32:18:0.389:2	./.	./.	./.	./.	0/1:1,45:30:46:0.978:2	./.	0/1:17,19:31:36:0.528:2	./.	./.
chr10	123903133	rs12765679	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,17:31:36:0.472:2	0/1:17,15:31:32:0.469:2	0/1:20,16:31:36:0.444:2	./.	./.	./.	./.	./.
chr10	123970019	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,22:11:133:0.165:2	0/1:123,14:13:138:0.102:2	0/1:115,16:12:131:0.122:2	./.	0/1:120,17:12:138:0.124:2	./.	0/1:112,16:15:129:0.125:2	0/1:104,24:17:129:0.188:2
chr10	123970021	rs201905665	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:81,25:25:106:0.236:2	./.	./.	0/1:105,34:20:139:0.245:2	0/1:115,31:20:146:0.212:2	0/1:104,41:22:145:0.283:2	0/1:123,37:20:160:0.231:2	0/1:109,35:20:144:0.243:2	0/1:117,22:19:139:0.158:2	0/1:102,40:23:142:0.282:2	0/1:98,42:25:140:0.300:2
chr10	123970530	rs2295873	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:27:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	123970569	rs2295874	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,8:30:21:0.381:2	0/1:8,7:30:15:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	123970722	rs2295876	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,14:28:25:0.560:2	0/1:11,11:31:22:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	123976242	rs34944231	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,39:31:80:0.488:2	./.
chr10	123976391	rs10444046	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,29:31:29:1.00:2	0/1:0,26:30:26:1.00:2	./.	0/1:12,5:31:17:0.294:2	0/1:10,11:29:21:0.524:2	0/1:11,11:30:22:0.500:2	0/1:0,20:30:20:1.00:2	./.	./.	0/1:7,4:31:11:0.364:2	0/1:20,8:31:28:0.286:2
chr10	123985898	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:120,4:33:125:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr10	123996970	rs61753077	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,14:32:30:0.467:2	./.	./.	./.	./.	./.	./.	./.
chr10	123996976	rs2295879	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,4:28:17:0.235:2	0/1:8,4:31:12:0.333:2	./.	0/1:18,14:32:32:0.438:2	0/1:18,14:30:32:0.438:2	./.	0/1:19,8:30:27:0.296:2	./.	./.	./.	./.
chr10	123997021	rs145179415	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:33:35:0.114:2	./.
chr10	124001539	rs11200496	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:17,13:30:31:0.433:2	0/1:10,6:32:16:0.375:2	./.	0/1:0,34:31:34:1.00:2	./.	./.	./.	./.	0/1:1,30:33:31:0.968:2	./.	./.
chr10	124009124	rs56075957	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,96:32:185:0.519:2	./.	./.	./.	./.	0/1:3,176:32:179:0.983:2	./.	./.
chr10	124036328	rs11200524	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,22:31:46:0.478:2	./.	./.	./.	./.
chr10	124066731	rs7100442	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,26:32:51:0.510:2	0/1:34,39:33:74:0.534:2	./.	./.	./.
chr10	124089036	rs2421013	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,11:33:32:0.344:2	0/1:8,7:32:15:0.467:2	./.	0/1:25,25:33:50:0.500:2	0/1:26,27:32:53:0.509:2	0/1:24,23:33:47:0.489:2	0/1:36,19:33:55:0.345:2	0/1:27,38:32:65:0.585:2	0/1:32,18:32:50:0.360:2	0/1:30,11:34:41:0.268:2	0/1:16,14:33:30:0.467:2
chr10	124089075	rs986178	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,19:32:52:0.380:2	0/1:26,17:30:43:0.395:2	./.	0/1:24,18:32:42:0.429:2	./.	./.	./.	./.
chr10	124096035	rs3817281	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,20:30:51:0.392:2	0/1:20,20:31:40:0.500:2	./.	./.	./.	0/1:35,15:33:50:0.300:2	./.	0/1:0,19:32:19:1.00:2	0/1:44,9:26:53:0.170:2	0/1:47,18:33:65:0.277:2	0/1:38,31:30:69:0.449:2
chr10	124096041	rs1129973	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,17:29:50:0.340:2	0/1:23,21:30:44:0.477:2	./.	./.	./.	0/1:35,17:31:52:0.327:2	./.	0/1:0,22:30:22:1.00:2	0/1:41,13:29:54:0.241:2	0/1:44,18:30:62:0.290:2	0/1:43,27:29:70:0.386:2
chr10	124096061	rs1048347	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,13:29:43:0.302:2	0/1:26,15:31:41:0.366:2	./.	./.	./.	0/1:40,19:32:59:0.322:2	./.	0/1:0,44:32:44:1.00:2	0/1:39,16:32:55:0.291:2	0/1:40,27:32:67:0.403:2	0/1:45,28:30:73:0.384:2
chr10	124159835	rs9988734	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,7:32:14:0.500:2	0/1:24,15:33:39:0.385:2	./.	./.	0/1:25,11:33:36:0.306:2	./.	./.
chr10	124175436	rs142473166	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,24:32:60:0.400:2	./.
chr10	124183732	rs4405249	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,41:31:41:1.00:2	0/1:0,27:30:27:1.00:2	./.	0/1:0,76:31:76:1.00:2	0/1:25,19:30:44:0.432:2	0/1:1,58:30:59:0.983:2	0/1:0,49:29:49:1.00:2	0/1:0,75:30:75:1.00:2	0/1:1,71:32:72:0.986:2	0/1:0,45:31:45:1.00:2	0/1:35,29:31:64:0.453:2
chr10	124189197	rs1045216	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,81:29:81:1.00:2	0/1:0,46:28:46:1.00:2	./.	0/1:43,38:29:81:0.469:2	./.	0/1:55,53:26:108:0.491:2	0/1:2,117:29:119:0.983:2	0/1:80,58:29:138:0.420:2	0/1:65,61:29:126:0.484:2	0/1:2,74:29:76:0.974:2	0/1:55,30:26:85:0.353:2
chr10	124214251	rs10490923	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,48:31:154:0.314:2	./.	./.	./.	./.	0/1:63,65:31:128:0.508:2	./.	0/1:72,59:32:131:0.450:2
chr10	124214355	rs2736911	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,7:32:15:0.467:2	./.	0/1:58,74:31:132:0.561:2	0/1:70,72:32:142:0.507:2	./.	./.	./.	./.	./.
chr10	124214448	rs10490924	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:47,42:31:89:0.472:2	0/1:26,18:32:44:0.409:2	./.	./.	./.	./.	0/1:53,52:32:105:0.495:2	./.	./.	0/1:60,35:32:96:0.368:2	./.
chr10	124216397	rs36213074	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,64:32:145:0.441:2	./.	./.	./.	./.	0/1:85,83:33:168:0.494:2	./.	0/1:109,77:32:186:0.414:2
chr10	124216410	rs11412729	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,65:32:152:0.430:2	./.	./.	./.	./.	0/1:96,95:33:192:0.497:2	./.	0/1:113,78:32:194:0.408:2
chr10	124329672	rs3740220	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:32:54:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,3:32:3:1.00:2	0/1:33,25:33:58:0.431:2	./.	0/1:2,79:31:81:0.975:2	0/1:37,23:33:60:0.383:2	0/1:40,37:32:77:0.481:2	0/1:58,42:33:100:0.420:2	0/1:0,63:32:63:1.00:2	0/1:38,26:32:64:0.406:2
chr10	124329673	rs3740221	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:32:54:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,3:32:3:1.00:2	0/1:33,25:32:58:0.431:2	./.	0/1:2,79:31:81:0.975:2	0/1:37,23:32:60:0.383:2	0/1:40,37:32:77:0.481:2	0/1:57,42:32:99:0.424:2	0/1:0,63:32:63:1.00:2	0/1:38,26:32:64:0.406:2
chr10	124329710	rs11523871	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:31:50:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,4:32:4:1.00:2	0/1:21,33:31:54:0.611:2	./.	0/1:0,68:30:68:1.00:2	0/1:31,16:30:47:0.340:2	0/1:33,35:30:68:0.515:2	0/1:51,27:31:78:0.346:2	0/1:0,47:30:47:1.00:2	0/1:34,21:31:55:0.382:2
chr10	124329746	rs3740222	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:31:35:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,3:31:3:1.00:2	0/1:14,24:30:39:0.632:2	./.	0/1:0,44:29:44:1.00:2	0/1:14,9:30:23:0.391:2	0/1:22,14:30:36:0.389:2	0/1:32,12:31:44:0.273:2	0/1:0,26:32:26:1.00:2	0/1:21,17:30:39:0.447:2
chr10	124330427	rs3013236	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:31:75:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,17:30:17:1.00:2	0/1:72,52:30:124:0.419:2	./.	0/1:0,98:30:98:1.00:2	0/1:70,30:31:100:0.300:2	0/1:60,52:31:112:0.464:2	0/1:67,49:32:116:0.422:2	0/1:0,75:31:75:1.00:2	0/1:47,46:31:93:0.495:2
chr10	124330458	rs374525872	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:33:67:0.060:2	./.
chr10	124330464	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:32:65:0.062:2	./.
chr10	124331867	rs7084792	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,111:32:111:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,118:32:118:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,115:33:115:1.00:2	0/1:0,105:33:105:1.00:2	0/1:0,110:32:110:1.00:2
chr10	124337292	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:33:172:0.023:2	./.	./.
chr10	124337296	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:32:181:0.022:2	./.	./.	./.
chr10	124339332	rs3013245	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,67:29:70:0.957:2	0/1:2,39:30:41:0.951:2	0/1:0,3:31:3:1.00:2	0/1:0,76:30:76:1.00:2	0/1:0,85:29:85:1.00:2	0/1:2,91:29:93:0.978:2	0/1:2,81:29:83:0.976:2	0/1:0,87:30:87:1.00:2	0/1:2,74:30:76:0.974:2	0/1:0,90:29:90:1.00:2	0/1:6,55:29:61:0.902:2
chr10	124339362	rs202149132	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:32:79:0.051:2
chr10	124342118	rs141757453	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,22:31:44:0.500:2	0/1:13,8:32:21:0.381:2	0/1:3,6:32:9:0.667:2	0/1:43,9:31:52:0.173:2	0/1:12,6:32:18:0.333:2	0/1:13,26:31:39:0.667:2	0/1:27,13:32:40:0.325:2	0/1:11,35:32:46:0.761:2	0/1:23,25:33:48:0.521:2	0/1:26,20:32:46:0.435:2	0/1:18,14:31:32:0.438:2
chr10	124343863	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,30:32:181:0.166:2
chr10	124343873	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,6:33:164:0.038:2
chr10	124345766	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:32:135:0.030:2	./.	./.	./.	./.	./.
chr10	124345811	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.
chr10	124345824	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,5:33:186:0.027:2	./.	0/1:185,5:32:190:0.026:2	./.	./.	0/1:133,4:32:137:0.029:2
chr10	124345859	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,5:29:76:0.066:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	124351879	rs142523929	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,14:33:33:0.424:2	./.	./.	./.	./.
chr10	124351954	rs4752722	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,9:32:28:0.321:2
chr10	124352092	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:28:52:0.077:2	./.	./.	./.
chr10	124354821	rs144450471	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,27:32:43:0.628:2	0/1:11,10:32:21:0.476:2	0/1:3,9:30:12:0.750:2	0/1:43,8:32:51:0.157:2	0/1:22,6:31:28:0.214:2	0/1:20,19:31:39:0.487:2	0/1:12,13:32:25:0.520:2	0/1:25,6:30:31:0.194:2	0/1:27,26:32:53:0.491:2	0/1:23,40:32:63:0.635:2	0/1:13,26:32:39:0.667:2
chr10	124354824	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,8:31:43:0.186:2
chr10	124356566	rs181123368	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,26:31:172:0.151:2
chr10	124356576	rs376412183	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,14:30:168:0.085:2
chr10	124358315	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,4:33:89:0.045:2	./.	./.	./.	./.	./.	./.	./.
chr10	124358498	rs144489236	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,31:32:57:0.544:2	0/1:18,17:33:35:0.486:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	124377777	.	T	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:47,7:33:54:0.130:2	./.	./.	./.	0/1:81,5:31:86:0.058:2	./.	./.	0/1:95,4:32:99:0.040:2	0/1:62,4:33:66:0.061:2	0/1:82,6:32:88:0.068:2	0/1:62,4:33:66:0.061:2
chr10	124380661	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:33:57:0.070:2	./.	./.
chr10	124380869	rs201533269	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,13:31:40:0.325:2
chr10	124380870	rs199679394	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,13:32:40:0.325:2
chr10	124380871	rs200490714	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,13:30:40:0.325:2
chr10	124402677	rs1052715	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,41:27:88:0.466:2	0/1:31,31:28:62:0.500:2	0/1:10,11:28:21:0.524:2	0/1:87,80:28:167:0.479:2	0/1:104,88:28:193:0.458:2	0/1:84,75:27:159:0.472:2	./.	0/1:98,93:28:191:0.487:2	0/1:0,108:29:108:1.00:2	./.	0/1:63,61:27:126:0.492:2
chr10	124457452	rs2947594	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,78:31:78:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,4:32:4:1.00:2	0/1:45,36:31:81:0.444:2	0/1:36,43:31:79:0.544:2	0/1:0,93:31:93:1.00:2	0/1:28,32:32:60:0.533:2	0/1:0,71:31:71:1.00:2	0/1:1,102:32:103:0.990:2	0/1:1,73:32:74:0.986:2	0/1:54,64:31:118:0.542:2
chr10	124457906	rs2901343	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:59,36:33:95:0.379:2	0/1:38,24:32:62:0.387:2	0/1:0,15:32:15:1.00:2	./.	./.	./.	./.	./.	0/1:72,71:33:143:0.497:2	0/1:55,45:33:100:0.450:2	./.
chr10	124459139	rs11813597	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:52,45:31:100:0.464:2	0/1:29,23:29:52:0.442:2	0/1:0,12:31:12:1.00:2	./.	./.	./.	./.	./.	0/1:64,58:31:122:0.475:2	0/1:44,37:30:81:0.457:2	./.
chr10	124594540	rs188322992	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,32:31:69:0.464:2	./.	./.	./.	./.
chr10	124595760	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,6:32:60:0.100:2	./.	./.	./.	./.	./.
chr10	124610027	rs1891110	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,66:33:129:0.512:2	0/1:56,32:32:88:0.364:2	0/1:0,16:32:16:1.00:2	0/1:79,78:32:157:0.497:2	0/1:2,138:32:140:0.986:2	0/1:2,160:32:162:0.988:2	0/1:1,123:32:124:0.992:2	./.	./.	0/1:63,61:33:124:0.492:2	0/1:85,80:33:165:0.485:2
chr10	124712377	rs141733396	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,84:33:178:0.472:2	./.	./.	./.
chr10	124742792	rs3736583	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,38:33:38:1.00:2	0/1:0,26:32:26:1.00:2	./.	0/1:41,19:32:60:0.317:2	0/1:0,27:32:27:1.00:2	0/1:0,30:30:30:1.00:2	0/1:1,30:32:31:0.968:2	0/1:1,32:32:33:0.970:2	0/1:16,19:32:35:0.543:2	0/1:0,27:32:27:1.00:2	0/1:1,48:32:49:0.980:2
chr10	124742858	rs45498396	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,22:31:53:0.415:2	0/1:16,17:32:33:0.515:2	./.	0/1:30,20:31:50:0.400:2	0/1:12,21:31:33:0.636:2	./.	0/1:18,13:32:31:0.419:2	0/1:2,61:31:63:0.968:2	0/1:11,24:33:35:0.686:2	./.	0/1:30,21:32:51:0.412:2
chr10	124742895	rs3736582	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,38:30:40:0.950:2	0/1:0,20:28:21:1.00:2	0/1:0,2:31:2:1.00:2	0/1:12,23:31:35:0.657:2	0/1:0,29:28:29:1.00:2	0/1:0,34:30:34:1.00:2	./.	0/1:1,62:30:63:0.984:2	0/1:9,24:30:33:0.727:2	0/1:0,22:29:22:1.00:2	0/1:2,35:29:37:0.946:2
chr10	124746472	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,60:31:149:0.403:2	./.	./.	./.	./.	./.
chr10	124746478	rs182903832	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,46:30:95:0.484:2	0/1:35,40:29:75:0.533:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	124749740	rs11190	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:71,62:32:133:0.466:2	0/1:40,44:32:84:0.524:2	0/1:14,5:33:19:0.263:2	./.	0/1:46,65:33:111:0.586:2	0/1:76,67:32:143:0.469:2	./.	./.	./.	./.	0/1:102,80:33:182:0.440:2
chr10	124768583	rs12263012	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:14,6:30:20:0.300:2	0/1:10,4:32:14:0.286:2	0/1:10,3:30:13:0.231:2	./.	0/1:18,9:30:27:0.333:2	0/1:9,15:31:24:0.625:2	./.	./.	./.	./.	0/1:5,6:27:11:0.545:2
chr10	124768614	rs117921026	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,8:26:15:0.533:2	0/1:3,6:29:9:0.667:2	./.	0/1:15,4:27:19:0.211:2	0/1:6,10:26:16:0.625:2	./.	./.	0/1:10,11:28:21:0.524:2	0/1:12,6:32:18:0.333:2	./.	0/1:2,3:32:5:0.600:2
chr10	124800774	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:33:81:0.049:2	./.	./.	./.	./.	./.
chr10	124800853	rs1140591	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,68:32:68:1.00:2	./.
chr10	124806770	rs1131430	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,16:32:34:0.471:2	./.	./.	./.	./.	./.	0/1:30,36:33:66:0.545:2
chr10	125426412	rs12263344	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,45:26:45:1.00:2	0/1:0,22:27:22:1.00:2	0/1:14,5:28:19:0.263:2	./.	0/1:0,42:27:42:1.00:2	0/1:0,56:26:56:1.00:2	0/1:30,13:26:43:0.302:2	0/1:40,27:27:67:0.403:2	0/1:43,26:26:69:0.377:2	0/1:0,29:26:29:1.00:2	0/1:22,8:28:30:0.267:2
chr10	125426565	rs4980313	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,97:28:97:1.00:2	0/1:0,61:28:61:1.00:2	0/1:0,16:28:16:1.00:2	0/1:0,135:27:135:1.00:2	0/1:0,153:26:153:1.00:2	0/1:0,122:27:122:1.00:2	0/1:0,108:27:108:1.00:2	0/1:0,138:26:138:1.00:2	0/1:1,125:28:126:0.992:2	0/1:0,106:27:106:1.00:2	0/1:0,87:26:87:1.00:2
chr10	125506302	rs7088479	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:31:48:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,39:30:39:1.00:2
chr10	125521533	rs10794566	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:30:27:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,3:32:3:1.00:2	0/1:20,23:31:43:0.535:2	0/1:0,40:29:40:1.00:2	0/1:17,19:30:36:0.528:2	0/1:0,38:30:38:1.00:2	./.	0/1:0,26:31:26:1.00:2	0/1:13,13:29:26:0.500:2	0/1:0,20:28:20:1.00:2
chr10	125521590	rs10794567	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:30:39:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,6:30:6:1.00:2	0/1:31,27:29:58:0.466:2	0/1:0,54:30:54:1.00:2	0/1:22,31:30:53:0.585:2	0/1:0,55:30:55:1.00:2	./.	0/1:0,61:31:61:1.00:2	0/1:17,13:29:30:0.433:2	0/1:0,32:30:32:1.00:2
chr10	125521626	rs62640889	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,40:31:77:0.519:2	./.	./.	./.	./.	./.	0/1:22,26:31:48:0.542:2	./.
chr10	125526627	rs7078024	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,27:31:65:0.422:2	./.	./.	./.	./.	./.
chr10	125528048	rs1219725	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,19:32:19:1.00:2	./.	./.	0/1:26,28:32:55:0.519:2	0/1:20,19:32:39:0.487:2	0/1:15,8:32:23:0.348:2	0/1:14,25:33:39:0.641:2	0/1:7,9:33:16:0.563:2
chr10	125601975	rs17679897	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:33:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	125798111	rs28375663	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:30:11:0.545:2	./.	./.	./.	./.	./.	./.	./.	0/1:43,50:28:94:0.538:2
chr10	125804310	rs61740019	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,42:31:103:0.408:2	./.	./.	./.	./.	./.
chr10	126089434	rs11461	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,41:32:100:0.410:2	./.	./.	./.	0/1:51,41:32:92:0.446:2	0/1:64,52:33:116:0.448:2	0/1:0,80:32:80:1.00:2	0/1:0,104:32:104:1.00:2
chr10	126097491	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:32:65:0.062:2	./.	0/1:80,5:33:85:0.059:2	./.	./.
chr10	126136112	rs7075981	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,4:32:8:0.500:2	0/1:19,8:29:27:0.296:2	./.	./.	0/1:10,6:30:16:0.375:2	0/1:16,15:28:31:0.484:2	./.	./.	./.
chr10	126136239	rs146495217	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,8:28:22:0.364:2	./.	./.	0/1:15,23:26:38:0.605:2	0/1:20,8:27:28:0.286:2	./.	./.	./.
chr10	126136682	rs3916136	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.
chr10	126138345	rs112863004	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,20:30:45:0.444:2	./.	./.	./.	./.
chr10	126172863	rs6597801	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,32:29:79:0.405:2	0/1:25,26:30:51:0.510:2	0/1:0,8:30:8:1.00:2	0/1:70,56:30:126:0.444:2	0/1:0,168:29:168:1.00:2	0/1:0,100:30:100:1.00:2	0/1:0,137:30:137:1.00:2	0/1:0,137:30:137:1.00:2	0/1:0,97:31:97:1.00:2	0/1:57,37:30:94:0.394:2	0/1:0,84:30:84:1.00:2
chr10	126480381	rs144443222	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	0/1:0,2:36:2:1.00:2
chr10	126517989	rs2303611	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,76:31:134:0.567:2	0/1:45,32:31:77:0.416:2	0/1:7,10:30:17:0.588:2	0/1:84,60:30:144:0.417:2	0/1:64,53:30:117:0.453:2	0/1:86,69:30:155:0.445:2	0/1:67,45:30:112:0.402:2	0/1:1,132:30:133:0.992:2	0/1:2,147:31:149:0.987:2	0/1:96,61:31:157:0.389:2	0/1:0,167:31:167:1.00:2
chr10	126631257	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:32:143:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	126655341	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:33:127:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	126670356	rs17152433	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,48:32:117:0.410:2	./.	./.	0/1:55,43:32:98:0.439:2	./.
chr10	126678180	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,21:29:54:0.389:2	./.	./.	./.	./.
chr10	126714714	rs2946994	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,17:28:17:1.00:2	./.	0/1:0,96:28:96:1.00:2	./.	./.	./.	0/1:47,70:29:117:0.598:2	0/1:65,32:27:97:0.330:2	0/1:40,52:27:92:0.565:2
chr10	126714966	rs3012075	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:27:7:0.857:2	./.	0/1:0,27:29:27:1.00:2	./.	./.	./.	0/1:16,17:31:33:0.515:2	0/1:28,21:29:49:0.429:2	0/1:17,11:32:28:0.393:2
chr10	126715054	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:33:83:0.048:2	./.	./.
chr10	126715075	rs3781413	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,19:26:52:0.365:2	0/1:24,7:28:31:0.226:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,8:30:33:0.242:2
chr10	126715118	rs185994757	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,21:30:47:0.447:2	./.	./.	./.	./.	./.
chr10	126715154	rs3781412	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,22:32:24:0.917:2	./.	0/1:20,16:31:36:0.444:2	0/1:4,3:33:7:0.429:2	0/1:0,21:30:21:1.00:2	./.	0/1:9,10:30:19:0.526:2	./.
chr10	126715245	rs202010294	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	126715276	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,4:31:56:0.071:2	./.	./.	./.	./.	./.	./.	./.
chr10	126715436	rs3781411	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,52:33:94:0.553:2	0/1:31,26:31:57:0.456:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,43:32:92:0.467:2
chr10	126715540	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,21:28:57:0.368:2	./.	./.	./.	./.	./.	./.
chr10	126715629	rs3781409	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,114:29:114:1.00:2	./.	0/1:53,42:29:95:0.442:2	0/1:34,42:29:76:0.553:2	0/1:3,96:29:99:0.970:2	0/1:44,36:31:80:0.450:2	0/1:41,35:30:76:0.461:2	./.
chr10	127350536	rs199568733	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,19:31:56:0.339:2	0/1:21,23:32:44:0.523:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	127409810	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:30:102:0.039:2	./.	./.	./.
chr10	127414270	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:33:66:0.061:2
chr10	127414350	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:32:52:0.077:2	./.
chr10	127441439	rs17153510	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,11:31:24:0.458:2	./.	./.	./.	./.	./.
chr10	127512179	rs113227232	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,35:31:61:0.574:2	./.	./.	./.	./.	./.	./.	./.
chr10	127520048	rs17153605	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,39:28:103:0.382:2	./.	./.	./.	./.	./.
chr10	127529908	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,4:28:74:0.054:2	./.	./.	./.	./.	./.	./.	./.
chr10	127530325	rs3208565	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:31:5:0.800:2	0/1:2,56:31:58:0.966:2	0/1:33,29:30:62:0.468:2	0/1:29,25:31:54:0.463:2	0/1:41,32:30:73:0.438:2	0/1:46,22:30:68:0.324:2	./.	0/1:22,17:31:39:0.436:2	./.
chr10	127585173	rs78146775	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr10	127585179	rs74162871	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,4:28:5:0.800:2	0/1:5,4:28:9:0.444:2	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.
chr10	127585240	rs5013161	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.
chr10	127693474	rs149457380	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,79:32:187:0.422:2	./.	./.	./.	./.	./.
chr10	127724778	rs1044122	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,24:32:54:0.444:2	./.	./.	0/1:0,39:33:39:1.00:2	./.	0/1:0,20:32:20:1.00:2
chr10	127730728	rs34265990	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,17:33:39:0.436:2	./.
chr10	127737930	rs2292692	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,38:32:110:0.345:2	./.	./.	./.	./.	./.	./.
chr10	127753388	rs2279091	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:21,33:30:54:0.611:2	0/1:18,11:30:30:0.379:2	./.	./.	./.	./.	./.	0/1:61,63:29:127:0.508:2	0/1:46,36:30:82:0.439:2	./.	0/1:20,19:30:40:0.487:2
chr10	127753478	rs1278279	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:30,35:31:65:0.538:2	0/1:14,19:31:33:0.576:2	./.	./.	0/1:84,72:31:156:0.462:2	./.	0/1:89,65:32:154:0.422:2	./.	./.	./.	./.
chr10	127760061	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,4:32:194:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr10	127967533	rs117627830	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,37:32:75:0.500:2	./.	./.	./.	./.
chr10	128019025	rs3740199	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:5,79:30:84:0.940:2	0/1:0,56:30:56:1.00:2	./.	0/1:0,102:30:102:1.00:2	./.	0/1:0,111:30:111:1.00:2	0/1:69,54:30:123:0.439:2	./.	0/1:80,59:31:139:0.424:2	0/1:50,41:31:91:0.451:2	0/1:0,149:30:149:1.00:2
chr10	128118348	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:33:121:0.033:2
chr10	128147771	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,4:32:67:0.060:2	./.	./.	./.	./.	./.	./.	./.
chr10	128191368	rs10510159	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,31:34:65:0.477:2	0/1:26,21:32:47:0.447:2	0/1:2,3:32:5:0.600:2	0/1:31,27:33:58:0.466:2	./.	0/1:1,76:32:77:0.987:2	0/1:2,71:33:73:0.973:2	0/1:51,34:32:85:0.400:2	./.	./.	./.
chr10	128192711	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:70,10:15:80:0.125:2	./.	./.	./.	./.	./.	./.	0/1:71,14:11:85:0.165:2	./.	./.	0/1:82,15:14:97:0.155:2
chr10	128192826	rs139034793	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,74:32:189:0.392:2	./.	./.	./.	./.	./.
chr10	128192985	rs11245007	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,44:31:76:0.579:2	0/1:15,14:32:29:0.483:2	0/1:5,5:32:10:0.500:2	0/1:45,38:32:83:0.458:2	./.	0/1:36,35:30:71:0.493:2	0/1:0,66:31:66:1.00:2	0/1:4,74:31:78:0.949:2	0/1:0,74:32:74:1.00:2	./.	./.
chr10	128193368	rs11245008	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,12:31:21:0.571:2	0/1:8,10:31:18:0.556:2	./.	./.
chr10	128202435	rs1436803	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,48:30:48:1.00:2	0/1:0,48:30:48:1.00:2	./.	0/1:0,67:30:67:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,67:31:67:1.00:2	0/1:40,58:31:98:0.592:2	0/1:0,42:31:42:1.00:2	0/1:47,46:29:93:0.495:2
chr10	128797642	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:33:119:0.034:2	./.	./.
chr10	128807078	rs9418678	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,9:31:14:0.643:2	./.	0/1:33,12:30:46:0.267:2	./.	./.	./.	./.	./.	./.
chr10	128810642	rs9418773	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:2,99:31:101:0.980:2	0/1:0,64:32:64:1.00:2	0/1:11,4:32:15:0.267:2	./.	./.	./.	./.	0/1:94,59:32:153:0.386:2	./.	./.	0/1:77,59:31:136:0.434:2
chr10	128830409	rs2229597	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,7:30:9:0.778:2	./.	0/1:37,36:29:73:0.493:2	0/1:29,35:29:64:0.547:2	0/1:52,42:29:94:0.447:2	./.	./.	./.	./.
chr10	128926013	rs1060561	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,78:32:78:1.00:2	0/1:0,35:31:35:1.00:2	0/1:8,3:31:11:0.273:2	0/1:1,74:32:75:0.987:2	0/1:1,44:31:45:0.978:2	0/1:61,38:32:99:0.384:2	0/1:47,43:31:90:0.478:2	0/1:66,48:32:114:0.421:2	0/1:0,97:33:97:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,88:32:89:1.00:2
chr10	128974220	rs11594560	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:3,129:32:132:0.977:2	0/1:0,56:31:56:1.00:2	0/1:3,10:32:13:0.769:2	./.	./.	./.	0/1:73,60:32:133:0.451:2	./.	./.	./.	0/1:0,161:31:161:1.00:2
chr10	128974621	rs2489386	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,68:31:68:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,54:31:54:1.00:2	./.	0/1:3,37:31:40:0.925:2	0/1:1,44:32:45:0.978:2	0/1:0,43:32:43:1.00:2	./.
chr10	129160458	rs2296635	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,22:31:48:0.458:2	0/1:17,11:31:28:0.393:2	0/1:3,4:31:7:0.571:2	0/1:23,13:29:36:0.361:2	./.	0/1:30,24:30:54:0.444:2	./.	0/1:5,65:31:70:0.929:2	./.	0/1:23,16:30:39:0.410:2	./.
chr10	129207429	rs2229599	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,4:30:22:0.182:2	./.	./.	./.
chr10	129216658	rs2229600	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:11,10:31:21:0.476:2	0/1:6,9:29:15:0.600:2	0/1:0,3:30:3:1.00:2	./.	./.	0/1:19,17:30:36:0.472:2	./.	./.	0/1:21,26:30:47:0.553:2	./.	./.
chr10	129242515	rs11371	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,19:32:33:0.576:2	0/1:11,14:32:25:0.560:2	./.	./.	0/1:55,27:31:82:0.329:2	0/1:42,25:32:67:0.373:2	0/1:66,29:32:95:0.305:2	0/1:40,34:32:74:0.459:2	0/1:44,21:33:65:0.323:2	0/1:18,25:32:43:0.581:2	0/1:28,22:33:50:0.440:2
chr10	129245684	rs869801	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:28,38:30:66:0.576:2	0/1:15,7:31:22:0.318:2	0/1:2,8:31:10:0.800:2	./.	./.	0/1:59,40:30:99:0.404:2	./.	./.	./.	./.	0/1:6,72:30:78:0.923:2
chr10	129249662	rs2229603	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,8:31:8:1.00:2	0/1:0,8:31:8:1.00:2	./.	0/1:12,8:32:20:0.400:2	0/1:1,19:31:20:0.950:2	0/1:0,19:31:19:1.00:2	0/1:2,23:31:25:0.920:2	0/1:2,12:30:14:0.857:2	0/1:1,31:31:32:0.969:2	0/1:13,6:31:19:0.316:2	0/1:0,24:30:24:1.00:2
chr10	129249676	rs2229604	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:34:4:1.00:2	0/1:0,5:32:5:1.00:2	./.	./.	./.	0/1:0,13:32:13:1.00:2	0/1:18,4:32:22:0.182:2	./.	./.	0/1:9,3:34:12:0.250:2	./.
chr10	129249693	rs2229605	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:33:4:1.00:2	0/1:0,3:33:3:1.00:2	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.	0/1:8,3:33:11:0.273:2	./.	./.	./.
chr10	129347785	rs990310	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,74:31:166:0.446:2	./.	./.	./.
chr10	129350856	rs4751440	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:31,19:32:50:0.380:2	0/1:12,10:33:22:0.455:2	0/1:3,5:33:8:0.625:2	./.	0/1:18,8:33:26:0.308:2	0/1:29,22:32:51:0.431:2	0/1:18,10:33:28:0.357:2	./.	./.	./.	./.
chr10	129676579	rs35146970	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,71:31:157:0.452:2	./.	./.	./.	./.	./.	./.	./.
chr10	129682074	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:34:64:0.063:2	./.	./.
chr10	129690826	rs35070529	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,23:32:42:0.548:2	./.	./.
chr10	129845903	rs11540423	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:36,18:30:54:0.333:2	0/1:16,16:31:32:0.500:2	./.	0/1:28,20:31:48:0.417:2	./.	./.	0/1:42,25:28:67:0.373:2	./.	./.	0/1:0,51:31:51:1.00:2	./.
chr10	129859992	rs4462251	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,46:32:106:0.434:2	0/1:49,26:32:75:0.347:2	0/1:12,5:33:17:0.294:2	0/1:0,106:32:106:1.00:2	./.	0/1:45,56:31:101:0.554:2	0/1:47,40:32:87:0.460:2	0/1:41,37:32:78:0.474:2	0/1:71,56:33:127:0.441:2	0/1:2,103:32:105:0.981:2	./.
chr10	129871690	rs2275803	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,12:33:18:0.667:2	./.	./.	0/1:63,74:32:138:0.540:2	0/1:85,93:32:178:0.522:2	./.	0/1:82,50:33:132:0.379:2	./.	./.
chr10	129899543	rs10082504	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,41:30:74:0.554:2	./.	./.	./.	./.	./.
chr10	129899578	rs8473	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,48:30:112:0.429:2	0/1:38,42:30:80:0.525:2	0/1:0,15:30:15:1.00:2	0/1:98,74:30:172:0.430:2	0/1:41,55:30:96:0.573:2	0/1:2,111:30:113:0.982:2	0/1:66,70:31:136:0.515:2	./.	0/1:76,57:31:133:0.429:2	0/1:77,44:31:121:0.364:2	0/1:0,142:30:142:1.00:2
chr10	129899629	rs16912247	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,12:32:18:0.667:2	./.	./.	./.	./.	./.	0/1:76,64:33:140:0.457:2	./.	./.
chr10	129899778	rs11106	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,63:32:132:0.477:2	0/1:49,37:32:86:0.430:2	0/1:10,4:32:14:0.286:2	0/1:80,78:33:158:0.494:2	0/1:61,45:32:106:0.425:2	0/1:1,142:32:144:0.993:2	0/1:81,66:32:147:0.449:2	./.	./.	0/1:66,80:34:146:0.548:2	0/1:1,180:33:181:0.994:2
chr10	129900858	rs3191122	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:54,66:33:120:0.550:2	0/1:31,41:33:72:0.569:2	./.	0/1:53,75:33:128:0.586:2	0/1:50,33:32:83:0.398:2	./.	0/1:56,65:32:121:0.537:2	./.	./.	0/1:68,53:32:121:0.438:2	0/1:0,163:33:163:1.00:2
chr10	129901066	rs114687140	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,55:31:90:0.611:2	./.	./.	./.	./.	./.
chr10	129901393	rs11016071	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,10:30:29:0.345:2	./.	./.	0/1:1,185:30:186:0.995:2	./.	./.	./.	./.	./.
chr10	129901501	rs2071496	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:84,77:32:161:0.478:2	0/1:35,50:32:85:0.588:2	./.	0/1:57,62:33:119:0.521:2	0/1:94,72:32:166:0.434:2	./.	0/1:93,74:33:167:0.443:2	./.	./.	0/1:85,52:31:137:0.380:2	0/1:1,153:32:154:0.994:2
chr10	129901721	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,15:14:177:0.085:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	129901722	rs10082432	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,9:30:24:0.375:2	./.	./.	0/1:4,118:30:122:0.967:2	./.	./.	./.	./.	./.
chr10	129901726	rs10082533	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,10:30:23:0.435:2	./.	./.	0/1:3,117:30:120:0.975:2	./.	./.	./.	./.	./.
chr10	129901747	rs10764749	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:67,85:31:152:0.559:2	0/1:58,60:32:118:0.508:2	./.	0/1:70,94:31:164:0.573:2	0/1:58,78:30:136:0.574:2	./.	0/1:76,73:30:149:0.490:2	./.	./.	0/1:61,61:31:122:0.500:2	0/1:0,167:31:167:1.00:2
chr10	129901825	rs10082391	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,14:32:31:0.452:2	./.	./.	0/1:0,182:31:182:1.00:2	./.	./.	./.	./.	./.
chr10	129901946	rs1050767	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,8:31:20:0.400:2	0/1:158,4:32:162:0.025:2	./.	0/1:5,128:32:133:0.962:2	./.	./.	./.	./.	./.
chr10	129902158	rs12777740	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,4:32:15:0.267:2	./.	./.	0/1:2,154:31:156:0.987:2	./.	./.	./.	./.	./.
chr10	129902281	rs1063535	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,40:32:94:0.426:2	0/1:43,27:31:70:0.386:2	0/1:0,16:31:16:1.00:2	0/1:64,48:32:112:0.429:2	0/1:74,56:31:130:0.431:2	0/1:3,103:31:106:0.972:2	0/1:41,51:32:92:0.554:2	./.	0/1:59,38:33:97:0.392:2	0/1:53,48:33:101:0.475:2	0/1:2,74:32:76:0.974:2
chr10	129902368	rs79661992	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	0/1:27,10:31:37:0.270:2	./.	./.	./.	./.	./.
chr10	129902712	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:33:108:0.037:2	./.	./.	./.	./.
chr10	129902739	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:30:119:0.034:2	./.	./.	./.	./.
chr10	129903016	rs7071768	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:92,90:32:182:0.495:2	0/1:55,61:32:116:0.526:2	0/1:0,19:32:19:1.00:2	0/1:97,93:33:190:0.489:2	0/1:59,88:32:147:0.599:2	0/1:2,180:32:182:0.989:2	0/1:114,70:33:185:0.380:2	./.	0/1:92,83:34:175:0.474:2	0/1:83,99:32:184:0.544:2	0/1:0,173:33:173:1.00:2
chr10	129903465	rs2857028	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:78,98:29:176:0.557:2	0/1:67,65:29:132:0.492:2	./.	0/1:89,92:30:181:0.508:2	0/1:49,58:28:107:0.542:2	./.	0/1:78,73:29:151:0.483:2	./.	0/1:174,6:30:180:0.033:2	0/1:65,97:29:162:0.599:2	0/1:2,166:29:168:0.988:2
chr10	129903491	rs2782873	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:32:156:0.026:2	./.	0/1:183,6:34:189:0.032:2	./.	./.
chr10	129903802	rs11016073	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,97:32:182:0.533:2	./.	./.	0/1:103,80:32:183:0.437:2	./.	0/1:93,94:33:187:0.503:2	0/1:85,83:32:168:0.494:2	./.
chr10	129904474	rs61738284	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,61:31:143:0.427:2	./.	./.	./.	./.	./.
chr10	129904477	rs11591817	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,10:32:19:0.526:2	./.	./.	0/1:2,139:31:141:0.986:2	./.	./.	./.	./.	./.
chr10	129904560	rs2853346	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:77,92:32:169:0.544:2	0/1:55,46:32:101:0.455:2	./.	0/1:108,72:31:180:0.400:2	./.	./.	0/1:83,63:31:146:0.432:2	./.	0/1:103,81:32:184:0.440:2	0/1:97,82:32:179:0.458:2	./.
chr10	129904917	rs1894410	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,18:31:37:0.486:2	./.	./.	0/1:41,23:31:64:0.359:2	./.	./.	./.
chr10	129905429	rs7918199	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,91:31:194:0.469:2	./.	./.	./.	./.	./.
chr10	129905896	rs3740423	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:88,88:30:178:0.500:2	0/1:88,60:30:148:0.405:2	./.	0/1:97,94:30:191:0.492:2	0/1:94,98:30:192:0.510:2	./.	0/1:101,88:30:189:0.466:2	./.	./.	0/1:98,90:30:190:0.479:2	0/1:2,186:30:189:0.989:2
chr10	129906364	rs4750685	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,49:30:96:0.510:2	./.	./.	./.	./.	./.
chr10	129906427	rs41306015	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:31:9:0.444:2	./.	./.	./.	./.	./.	0/1:49,32:31:82:0.395:2	./.	./.
chr10	129906468	rs4750936	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:29:7:0.429:2	./.	./.	0/1:3,93:31:96:0.969:2	./.	./.	./.	./.	./.
chr10	129906607	rs41305024	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,80:33:182:0.440:2	./.	./.	./.	./.	./.	./.	./.
chr10	129906674	rs41300566	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,14:33:42:0.333:2	./.	./.	./.	./.	./.	0/1:102,88:34:190:0.463:2	./.	./.
chr10	129906738	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:34:122:0.033:2	./.	./.	./.
chr10	129906869	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,51:31:127:0.402:2
chr10	129906980	rs2152143	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:101,92:33:193:0.477:2	0/1:74,84:33:158:0.532:2	./.	0/1:111,85:32:196:0.434:2	0/1:93,98:32:191:0.513:2	./.	0/1:96,92:32:188:0.489:2	./.	./.	0/1:98,90:33:188:0.479:2	0/1:0,186:33:186:1.00:2
chr10	129907489	rs2853344	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,9:30:20:0.450:2	./.	./.	./.	./.	./.	0/1:97,82:32:180:0.458:2	./.	./.
chr10	129907544	rs2240	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,7:32:22:0.318:2	./.	./.	0/1:1,176:32:177:0.994:2	./.	./.	./.	./.	./.
chr10	129907610	rs34916904	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,61:32:134:0.455:2	./.	./.	./.	./.	./.	./.
chr10	129910475	rs997983	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,37:32:83:0.446:2	./.	./.	./.	./.	./.
chr10	129911856	rs11016076	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,82:30:83:0.988:2	./.	./.	./.	./.	./.
chr10	129913960	rs7095325	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	0/1:19,8:31:27:0.296:2	./.	./.	0/1:3,3:32:6:0.500:2	./.	0/1:15,27:32:42:0.643:2
chr10	129917560	rs2071498	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,77:33:77:1.00:2	0/1:2,41:32:43:0.953:2	./.	0/1:0,77:33:77:1.00:2	0/1:46,28:32:74:0.378:2	0/1:0,97:32:97:1.00:2	0/1:2,61:32:63:0.968:2	./.	0/1:73,74:33:147:0.503:2	0/1:0,71:32:71:1.00:2	0/1:0,114:33:114:1.00:2
chr10	129921195	rs1063536	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,82:32:164:0.500:2	./.	./.	./.	./.	0/1:95,101:33:196:0.515:2
chr10	131265545	rs16906252	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,28:29:50:0.560:2	./.	./.	./.	./.	./.	./.	./.
chr10	131506192	rs1803965	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,14:32:24:0.583:2	0/1:10,8:32:18:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,5:31:26:0.192:2
chr10	131506262	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	131506283	rs12917	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,15:31:25:0.600:2	0/1:11,7:31:18:0.389:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,14:28:37:0.378:2
chr10	131565064	rs2308321	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:24,15:29:39:0.385:2	0/1:11,14:27:25:0.560:2	./.	0/1:44,39:28:83:0.470:2	./.	./.	0/1:55,44:28:99:0.444:2	./.	./.	./.	./.
chr10	131565170	rs2308327	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:30,14:31:44:0.318:2	0/1:10,18:31:28:0.643:2	./.	0/1:24,27:32:51:0.529:2	./.	./.	0/1:21,24:32:45:0.533:2	./.	./.	./.	./.
chr10	131641443	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,32:32:76:0.421:2	./.	./.	./.	./.	./.	./.
chr10	131757281	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:29:45:0.089:2	./.
chr10	131761693	rs75074888	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,64:30:125:0.512:2	./.	./.	./.
chr10	131934747	rs13991	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:32:15:0.533:2	./.	./.	./.	./.	./.	./.	./.
chr10	131958304	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:32:91:0.044:2
chr10	131959150	rs2274217	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,22:30:58:0.379:2	./.	./.	./.	0/1:32,36:31:68:0.529:2	./.	0/1:11,26:32:37:0.703:2	0/1:25,16:29:41:0.390:2
chr10	131967693	rs17297984	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:133,5:33:138:0.036:2	./.	0/1:13,3:30:16:0.188:2	0/1:0,100:31:100:1.00:2	0/1:45,44:30:89:0.494:2	./.	0/1:127,7:32:134:0.052:2	0/1:74,54:30:128:0.422:2	./.	0/1:71,45:31:116:0.388:2	0/1:83,88:31:171:0.515:2
chr10	133058649	rs149055623	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,14:29:32:0.438:2	./.
chr10	133107496	rs61732111	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,32:31:56:0.571:2	./.	./.	./.	./.	./.	./.	0/1:21,24:32:45:0.533:2
chr10	133107539	rs148480002	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,18:31:36:0.500:2	./.	./.	./.	./.	./.
chr10	133761285	rs34473884	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,63:33:134:0.470:2	./.	0/1:78,77:32:155:0.497:2	./.	./.	0/1:81,67:33:148:0.453:2	./.	./.
chr10	133786586	rs1050704	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,58:32:141:0.411:2	./.	0/1:63,63:31:126:0.500:2	./.	./.	./.	./.	0/1:63,88:31:151:0.583:2
chr10	133786610	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:31:117:0.034:2	0/1:119,8:32:127:0.063:2	./.	./.	./.
chr10	133786615	rs377253213	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr10	133918372	rs10870252	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,7:28:18:0.389:2	./.	./.	./.	./.	0/1:31,59:30:90:0.656:2	./.	./.	./.
chr10	133918420	rs11146177	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:55,21:31:76:0.276:2	0/1:19,7:32:26:0.269:2	./.	./.	./.	./.	./.	0/1:52,30:31:82:0.366:2	0/1:1,49:32:50:0.980:2	0/1:2,47:30:49:0.959:2	0/1:22,19:31:42:0.463:2
chr10	133930958	rs376645431	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:30:134:0.030:2	./.	./.	./.
chr10	133948634	rs2814182	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:27:30:1.00:2	0/1:0,12:28:12:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,25:28:25:1.00:2	0/1:8,13:28:21:0.619:2	0/1:12,11:27:23:0.478:2	0/1:0,25:27:25:1.00:2	0/1:0,27:27:27:1.00:2	0/1:7,11:29:18:0.611:2	0/1:13,12:28:25:0.480:2	./.
chr10	133950642	rs75996870	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,48:30:93:0.516:2	./.	./.	./.	./.	./.	0/1:27,35:30:62:0.565:2	./.
chr10	133954011	rs2818387	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,36:31:80:0.450:2	0/1:23,21:32:44:0.477:2	0/1:9,13:30:22:0.591:2	0/1:79,48:31:127:0.378:2	0/1:60,47:31:107:0.439:2	0/1:73,52:30:125:0.416:2	0/1:0,128:32:128:1.00:2	0/1:66,43:31:109:0.394:2	0/1:73,72:32:145:0.497:2	./.	0/1:59,46:31:105:0.438:2
chr10	133955427	rs11592585	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:25,20:29:45:0.444:2	0/1:9,11:27:20:0.550:2	0/1:14,3:30:17:0.176:2	./.	./.	./.	0/1:4,121:29:125:0.968:2	0/1:35,37:28:72:0.514:2	0/1:35,35:29:70:0.500:2	./.	./.
chr10	133961494	rs2818384	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:31:51:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,6:31:6:1.00:2	0/1:38,23:31:61:0.377:2	0/1:32,32:31:64:0.500:2	0/1:40,33:31:73:0.452:2	0/1:0,75:31:75:1.00:2	0/1:53,50:31:103:0.485:2	0/1:32,40:32:72:0.556:2	./.	0/1:43,26:32:69:0.377:2
chr10	133963466	rs9419380	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,19:32:33:0.576:2	0/1:7,5:32:12:0.417:2	0/1:0,6:32:6:1.00:2	0/1:40,25:32:66:0.385:2	0/1:48,50:32:98:0.510:2	0/1:40,38:32:78:0.487:2	0/1:0,112:31:112:1.00:2	0/1:62,45:31:107:0.421:2	0/1:0,65:33:66:1.00:2	0/1:34,19:32:53:0.358:2	0/1:32,29:32:61:0.475:2
chr10	133963499	rs117391524	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:35,23:31:58:0.397:2	0/1:14,11:31:25:0.440:2	./.	0/1:45,56:31:101:0.554:2	./.	./.	./.	./.	./.	./.	./.
chr10	134013906	rs56326856	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,59:31:104:0.567:2	./.	./.	./.	./.	./.	0/1:33,33:31:66:0.500:2	./.
chr10	134013974	rs114312744	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,26:32:53:0.491:2	./.
chr10	134013990	rs2247705	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:31:44:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,49:31:49:1.00:2	0/1:30,38:31:69:0.559:2	0/1:28,32:32:60:0.533:2	0/1:0,72:31:72:1.00:2	0/1:42,30:31:72:0.417:2	0/1:32,13:33:45:0.289:2	0/1:2,40:32:42:0.952:2	0/1:14,14:31:28:0.500:2
chr10	134017295	rs12313	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:29:20:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,15:31:15:1.00:2	0/1:7,5:32:12:0.417:2	0/1:12,7:32:19:0.368:2	0/1:0,4:30:4:1.00:2	0/1:6,7:30:13:0.538:2	0/1:9,10:32:19:0.526:2	0/1:0,12:29:12:1.00:2	0/1:5,4:32:9:0.444:2
chr10	134017388	rs1052556	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,26:32:80:0.325:2	0/1:20,31:31:51:0.608:2	0/1:19,5:34:24:0.208:2	0/1:48,40:32:88:0.455:2	./.	./.	./.	./.	./.	./.	./.
chr10	134021634	rs146688423	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,31:32:80:0.392:2	./.
chr10	134036193	rs2818401	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,36:32:36:1.00:2	0/1:0,29:31:29:1.00:2	./.	0/1:1,24:33:25:0.960:2	0/1:38,26:33:64:0.406:2	0/1:34,21:33:55:0.382:2	0/1:0,33:31:33:1.00:2	0/1:30,25:32:55:0.455:2	0/1:38,39:32:77:0.506:2	0/1:0,35:33:35:1.00:2	0/1:28,13:32:41:0.317:2
chr10	134038765	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,10:13:61:0.164:2	./.	./.	./.
chr10	134039074	rs200300817	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,53:32:114:0.465:2	./.	./.
chr10	134039242	rs2130894	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:48,37:31:85:0.435:2	0/1:37,22:32:59:0.373:2	./.	0/1:57,47:30:104:0.452:2	./.	./.	0/1:68,62:31:130:0.477:2	./.	0/1:63,57:32:120:0.475:2	0/1:50,42:32:92:0.457:2	0/1:46,40:32:86:0.465:2
chr10	134040367	rs12413251	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:33:11:0.636:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	134143942	rs1052281	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:56,22:30:79:0.282:2	0/1:23,17:32:40:0.425:2	0/1:0,12:31:12:1.00:2	./.	0/1:51,39:31:90:0.433:2	./.	0/1:3,50:31:53:0.943:2	./.	0/1:92,36:31:128:0.281:2	0/1:46,33:30:79:0.418:2	0/1:80,31:31:111:0.279:2
chr10	134143985	rs1132165	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:50,32:32:82:0.390:2	0/1:27,19:32:46:0.413:2	0/1:0,11:29:11:1.00:2	./.	0/1:43,21:31:64:0.328:2	./.	0/1:4,29:31:33:0.879:2	./.	0/1:102,30:31:132:0.227:2	0/1:57,36:31:93:0.387:2	0/1:73,14:30:87:0.161:2
chr10	134143986	rs1132164	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:49,32:32:81:0.395:2	0/1:27,19:32:46:0.413:2	0/1:0,11:31:11:1.00:2	./.	0/1:43,21:31:64:0.328:2	./.	0/1:4,29:31:33:0.879:2	./.	0/1:102,30:31:132:0.227:2	0/1:55,36:31:91:0.396:2	0/1:74,14:31:88:0.159:2
chr10	134144005	rs7085852	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,6:32:29:0.207:2	./.	./.	./.	0/1:75,8:27:83:0.096:2
chr10	134145136	rs7086691	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:23,10:31:34:0.303:2	0/1:16,3:33:19:0.158:2	0/1:0,3:32:3:1.00:2	./.	0/1:31,4:33:35:0.114:2	./.	0/1:4,12:29:16:0.750:2	./.	0/1:45,12:31:57:0.211:2	0/1:25,4:23:29:0.138:2	0/1:28,8:33:36:0.222:2
chr10	134145138	rs7080014	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:24,9:30:33:0.273:2	0/1:17,3:30:20:0.150:2	0/1:0,3:29:3:1.00:2	./.	0/1:31,4:27:35:0.114:2	./.	0/1:4,12:29:16:0.750:2	./.	0/1:47,12:28:59:0.203:2	./.	0/1:28,7:27:35:0.200:2
chr10	134145153	rs7100410	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:24,4:29:28:0.143:2	./.	./.	./.	./.	./.	0/1:4,5:21:10:0.556:2	./.	0/1:44,7:26:51:0.137:2	0/1:24,4:27:30:0.143:2	0/1:24,4:30:28:0.143:2
chr10	134145166	rs13882	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,5:28:8:0.625:2	./.	./.	0/1:23,5:28:28:0.179:2	./.
chr10	134145288	rs12778987	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:4,4:27:8:0.500:2	0/1:3,4:29:7:0.571:2	./.	./.	0/1:2,3:30:5:0.600:2	./.	0/1:2,10:30:12:0.833:2	./.	0/1:5,8:31:13:0.615:2	0/1:1,8:30:9:0.889:2	./.
chr10	134145293	rs12784130	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:4,4:32:8:0.500:2	0/1:3,5:32:8:0.625:2	0/1:0,2:32:2:1.00:2	./.	0/1:2,4:33:6:0.667:2	./.	0/1:0,14:31:14:1.00:2	./.	0/1:4,8:33:12:0.667:2	0/1:0,9:28:9:1.00:2	0/1:10,7:28:17:0.412:2
chr10	134145296	rs372900819	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,4:30:6:0.667:2	./.	./.	./.	./.	./.	./.
chr10	134145314	rs11146335	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.	./.	0/1:4,3:32:7:0.429:2	0/1:15,9:33:24:0.375:2	./.	0/1:0,5:29:5:1.00:2	./.	./.	./.
chr10	134145336	rs12784321	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	0/1:2,5:31:7:0.714:2	./.	./.	./.	./.	0/1:0,8:29:8:1.00:2	./.	0/1:2,4:31:6:0.667:2	0/1:0,7:32:7:1.00:2	0/1:4,6:27:10:0.600:2
chr10	134147172	rs12414718	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,15:32:34:0.441:2	./.	./.	./.	0/1:25,26:30:51:0.510:2
chr10	134161517	rs2474329	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:21,19:32:40:0.475:2	0/1:18,19:31:37:0.514:2	0/1:4,5:32:9:0.556:2	./.	0/1:40,25:32:65:0.385:2	./.	0/1:40,26:33:66:0.394:2	./.	0/1:43,38:32:81:0.469:2	0/1:27,20:32:47:0.426:2	./.
chr10	134161633	rs2474328	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:29:30:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,2:29:2:1.00:2	0/1:16,17:31:33:0.515:2	0/1:0,31:29:31:1.00:2	0/1:16,10:30:26:0.385:2	0/1:0,31:28:31:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,17:29:17:1.00:2	0/1:15,17:28:33:0.531:2
chr10	134218175	rs111647732	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:37,29:30:66:0.439:2	0/1:18,23:31:41:0.561:2	0/1:6,9:30:15:0.600:2	./.	./.	./.	./.	./.	./.	0/1:48,27:31:75:0.360:2	./.
chr10	134218260	rs200128649	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:28:7:0.429:2
chr10	134218269	rs11146363	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,5:30:8:0.625:2	./.	./.	./.	0/1:0,6:25:6:1.00:2	0/1:4,4:31:8:0.500:2	./.	0/1:0,8:30:8:1.00:2	0/1:0,4:32:4:1.00:2	0/1:6,4:28:10:0.400:2	0/1:0,4:26:4:1.00:2
chr10	134218296	rs10747057	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:29:3:1.00:2	./.	0/1:0,2:31:2:1.00:2	./.
chr10	134218863	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:33:5:0.800:2	./.
chr10	134219066	rs76595411	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.
chr10	134230605	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:145,4:33:149:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr10	134261296	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,6:31:104:0.058:2	./.	./.	./.	./.	./.
chr10	134459388	rs1133400	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,12:30:32:0.375:2	./.	./.	./.	./.	0/1:23,21:32:44:0.477:2	./.	./.
chr10	134521802	rs41301113	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,70:33:190:0.368:2	0/1:108,87:32:195:0.446:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	134521814	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,95:31:196:0.485:2	./.	./.	./.
chr10	134521983	.	A	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:88,33:8:121:0.273:2	./.	./.	0/1:112,32:12:144:0.222:2	0/1:119,29:12:148:0.196:2	0/1:100,35:11:135:0.259:2	0/1:105,37:10:142:0.261:2	0/1:93,42:12:135:0.311:2	./.	0/1:91,34:8:125:0.272:2	0/1:109,26:11:135:0.193:2
chr10	134521998	.	A	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:65,41:9:106:0.387:2	0/1:57,18:14:75:0.240:2	./.	0/1:75,41:11:116:0.353:2	0/1:91,42:11:133:0.316:2	0/1:80,54:10:134:0.403:2	0/1:79,54:10:133:0.406:2	0/1:61,54:11:115:0.470:2	0/1:83,31:8:115:0.272:2	0/1:74,39:10:113:0.345:2	0/1:82,35:8:117:0.299:2
chr10	134522004	rs114253485	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,48:20:114:0.425:2	0/1:40,28:13:69:0.412:2	0/1:9,10:13:19:0.526:2	0/1:68,55:17:123:0.447:2	0/1:87,52:16:139:0.374:2	0/1:79,57:16:137:0.419:2	0/1:74,58:15:133:0.439:2	0/1:66,59:17:126:0.472:2	0/1:86,45:17:131:0.344:2	0/1:58,47:18:107:0.448:2	0/1:68,56:18:125:0.452:2
chr10	134540331	rs33999092	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,37:30:77:0.481:2	./.	./.	./.	./.	./.
chr10	134540400	rs945943	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,31:32:75:0.413:2	./.
chr10	134598628	rs2804003	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,19:30:19:1.00:2	0/1:0,16:31:16:1.00:2	./.	0/1:0,19:30:19:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,13:32:13:1.00:2
chr10	134598946	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,6:32:71:0.085:2	./.	./.	./.	./.	./.	./.
chr10	134622046	rs73387072	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,17:31:20:0.850:2	./.	./.	./.	./.	./.
chr10	134622104	rs148457914	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:31:6:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	134622408	rs2767434	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:39,33:31:72:0.458:2	0/1:26,23:31:49:0.469:2	./.	./.	0/1:49,47:32:96:0.490:2	0/1:76,53:33:129:0.411:2	0/1:0,102:32:102:1.00:2	0/1:99,62:32:161:0.385:2	0/1:0,109:33:109:1.00:2	0/1:43,34:31:77:0.442:2	0/1:0,64:31:64:1.00:2
chr10	134623959	rs2254419	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,40:30:84:0.476:2	0/1:27,28:30:55:0.509:2	./.	0/1:76,56:30:133:0.424:2	0/1:100,66:30:166:0.398:2	0/1:81,76:30:157:0.484:2	0/1:0,186:30:186:1.00:2	0/1:117,81:30:198:0.409:2	0/1:0,121:31:121:1.00:2	0/1:58,40:29:98:0.408:2	0/1:0,75:29:75:1.00:2
chr10	134624225	rs12416624	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:32:16:0.563:2	./.	0/1:4,5:30:9:0.556:2	./.	0/1:12,3:30:15:0.200:2	./.	./.	./.
chr10	134624504	rs2274429	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,28:32:56:0.500:2	0/1:25,13:32:38:0.342:2	./.	./.	./.	./.	./.	./.	0/1:32,29:33:61:0.475:2	0/1:28,24:31:52:0.462:2	0/1:27,20:31:47:0.426:2
chr10	134626383	rs7090011	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,10:31:14:0.714:2	./.	./.	./.	./.	./.
chr10	134646988	rs4880433	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:34,50:30:85:0.595:2	0/1:38,20:30:58:0.345:2	0/1:0,18:31:18:1.00:2	./.	0/1:78,45:30:123:0.366:2	0/1:55,49:30:105:0.471:2	./.	./.	./.	0/1:55,52:31:107:0.486:2	./.
chr10	134659626	rs10870341	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,12:27:37:0.324:2	0/1:47,22:26:69:0.319:2	0/1:38,19:27:57:0.333:2	./.	0/1:58,24:28:82:0.293:2	./.	./.	./.
chr10	134663933	rs151247898	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,25:29:51:0.490:2	./.	./.	./.	./.	./.	./.	./.
chr10	134671094	rs73391289	G	C,A	.	PASS	AC=1,2;AF=0.111,0.222;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0/2:32:60:0.450:2	0/2:31:36:0.528:2	./.	./.	./.	0/1:32:47:0.532:2	./.	./.	./.	./.	./.
chr10	134671148	rs144154094	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,45:30:101:0.446:2	./.	./.	./.	0/1:88,58:30:146:0.397:2	./.	./.	./.
chr10	134671150	rs148181302	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,45:29:102:0.441:2	./.	./.	./.	0/1:89,58:28:147:0.395:2	./.	./.	./.
chr10	134671154	rs189775198	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,54:30:115:0.470:2	./.	./.	./.	0/1:88,67:30:155:0.432:2	./.	./.	./.
chr10	134680921	rs141926275	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,38:29:98:0.388:2	./.	./.	./.	0/1:62,45:29:107:0.421:2	./.	./.	./.
chr10	134680995	rs150661681	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,39:32:92:0.424:2	./.	./.	./.	0/1:57,43:32:100:0.430:2	./.	./.	./.
chr10	134682802	rs7084629	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,14:29:17:0.824:2	./.	./.	./.	0/1:11,28:29:40:0.718:2	./.	./.	./.
chr10	134682833	rs149742494	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,20:30:29:0.690:2	./.	./.	./.	0/1:17,37:31:54:0.685:2	./.	./.	./.
chr10	134682855	rs7908950	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:12,14:30:26:0.538:2	0/1:6,5:30:11:0.455:2	0/1:0,3:31:3:1.00:2	./.	0/1:12,21:29:33:0.636:2	0/1:12,23:30:35:0.657:2	./.	./.	./.	0/1:9,12:31:21:0.571:2	./.
chr10	134682864	rs144551659	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,26:31:39:0.667:2	./.	./.	./.	./.	./.	./.	./.
chr10	134691424	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:182,9:32:191:0.047:2	./.	./.	./.	0/1:175,13:30:188:0.069:2	./.	./.	./.
chr10	134691427	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:173,10:33:183:0.055:2	./.	./.	./.	0/1:168,13:33:181:0.072:2	./.	./.	./.
chr10	134691472	rs181912601	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,51:31:190:0.268:2	./.	./.	./.	0/1:120,49:31:169:0.290:2	./.	./.	./.
chr10	134691496	rs187274296	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,34:33:182:0.187:2	./.	./.	./.	0/1:123,32:32:155:0.206:2	./.	./.	./.
chr10	134693092	rs139343897	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:32:14:0.571:2	./.	./.	./.	0/1:5,3:32:8:0.375:2	./.	./.	./.
chr10	134693118	rs149909284	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:34:9:0.667:2	./.	./.	./.	0/1:5,3:34:8:0.375:2	./.	./.	./.
chr10	134694391	rs145022957	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:32:13:0.308:2	./.	./.	./.	0/1:10,8:32:18:0.444:2	./.	./.	./.
chr10	134694526	rs148582169	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,22:30:53:0.415:2	./.	./.	./.	0/1:52,55:29:107:0.514:2	./.	./.	./.
chr10	134698626	rs73393250	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,43:33:101:0.426:2	./.	./.	./.	0/1:37,28:31:65:0.431:2	./.	./.	./.
chr10	134722022	rs7075277	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,35:29:73:0.479:2	0/1:12,35:29:47:0.745:2	0/1:14,4:32:18:0.222:2	0/1:72,63:30:135:0.467:2	./.	0/1:61,35:30:96:0.365:2	./.	0/1:88,67:30:155:0.432:2	./.	0/1:46,35:28:81:0.432:2	./.
chr10	134723471	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,19:32:34:0.559:2	./.
chr10	134726214	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:32:64:0.063:2
chr10	134726621	rs4880467	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:70,67:30:137:0.489:2	0/1:47,36:29:83:0.434:2	0/1:11,17:30:28:0.607:2	./.	./.	./.	./.	./.	./.	0/1:80,64:30:144:0.444:2	./.
chr10	134733684	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,18:32:33:0.545:2	./.	./.	./.	./.	./.
chr10	134735672	rs7915371	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:28:92:1.00:2	0/1:0,61:29:61:1.00:2	0/1:13,6:29:19:0.316:2	0/1:96,67:29:163:0.411:2	./.	0/1:95,91:29:187:0.489:2	./.	0/1:98,86:29:184:0.467:2	./.	0/1:57,51:30:108:0.472:2	0/1:89,66:28:155:0.426:2
chr10	134736019	rs41302993	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,4:34:15:0.267:2	0/1:3,5:32:8:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	134736026	rs4880286	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:11,4:30:15:0.267:2	0/1:4,6:32:10:0.600:2	0/1:3,5:32:8:0.625:2	./.	./.	0/1:33,32:32:66:0.492:2	./.	./.	./.	0/1:12,15:33:27:0.556:2	0/1:7,10:32:17:0.588:2
chr10	134736052	rs4880287	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:8,6:33:14:0.429:2	0/1:6,5:33:11:0.455:2	0/1:4,4:32:8:0.500:2	./.	./.	0/1:32,25:32:57:0.439:2	./.	./.	./.	0/1:15,14:32:29:0.483:2	0/1:8,7:31:15:0.467:2
chr10	134736076	rs4880288	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,17:33:17:1.00:2	0/1:0,15:32:15:1.00:2	./.	0/1:26,8:32:34:0.235:2	./.	0/1:27,16:32:43:0.372:2	./.	0/1:6,3:32:9:0.333:2	./.	0/1:16,12:32:28:0.429:2	0/1:6,4:31:10:0.400:2
chr10	134738232	rs4075501	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:30:19:1.00:2	0/1:1,11:30:12:0.917:2	0/1:5,5:31:10:0.500:2	0/1:18,12:31:30:0.400:2	./.	0/1:20,13:31:33:0.394:2	./.	0/1:16,13:30:29:0.448:2	./.	0/1:18,4:32:22:0.182:2	0/1:9,8:30:17:0.471:2
chr10	134748331	rs12781609	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:19,21:32:40:0.525:2	0/1:11,8:32:19:0.421:2	0/1:4,6:31:10:0.600:2	./.	./.	0/1:20,17:31:37:0.459:2	./.	./.	./.	0/1:26,21:32:47:0.447:2	0/1:35,26:32:61:0.426:2
chr10	134752184	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,77:32:152:0.507:2	./.	./.	./.
chr10	134756013	rs7898115	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	134902396	rs10776692	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:31:3:1.00:2	0/1:5,8:28:13:0.615:2	0/1:3,4:28:7:0.571:2	0/1:0,13:29:13:1.00:2	0/1:0,4:30:4:1.00:2	./.	0/1:0,3:27:3:1.00:2	0/1:2,10:27:12:0.833:2	0/1:0,6:27:6:1.00:2
chr10	134902398	rs10776693	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:28:3:1.00:2	0/1:5,8:28:13:0.615:2	0/1:3,4:30:7:0.571:2	0/1:0,13:27:13:1.00:2	0/1:0,4:29:4:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,3:28:3:1.00:2	0/1:2,10:29:12:0.833:2	0/1:0,6:27:6:1.00:2
chr10	134942166	rs2806452	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,19:28:32:0.594:2	./.	./.	0/1:29,17:28:46:0.370:2	0/1:1,34:25:35:0.971:2	0/1:0,48:28:48:1.00:2	./.	0/1:28,10:24:38:0.263:2	0/1:0,23:28:23:1.00:2	0/1:0,17:25:17:1.00:2	0/1:9,8:28:17:0.471:2
chr10	134942319	rs2806453	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,9:32:11:0.818:2	./.	./.	./.	./.	./.	./.	./.
chr10	134942698	rs150943550	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,6:27:13:0.462:2
chr10	134973995	rs71503783	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:30:14:0.571:2	0/1:5,4:31:9:0.444:2	./.	./.	./.	0/1:0,5:27:5:1.00:2	0/1:0,6:31:6:1.00:2	0/1:2,5:32:7:0.714:2
chr10	134981777	rs79557483	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,20:31:53:0.377:2	./.	./.	./.	./.
chr10	134981837	rs2998151	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,42:27:42:1.00:2	0/1:0,16:30:16:1.00:2	./.	0/1:30,37:28:67:0.552:2	0/1:0,57:28:57:1.00:2	0/1:0,56:28:56:1.00:2	./.	0/1:0,56:28:56:1.00:2	0/1:0,54:29:54:1.00:2	0/1:0,43:29:43:1.00:2	0/1:37,25:28:62:0.403:2
chr10	134997480	rs57510763	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,20:32:20:1.00:2	0/1:66,49:30:115:0.426:2	0/1:86,40:31:126:0.317:2	./.	0/1:3,120:32:123:0.976:2	./.	0/1:54,29:32:83:0.349:2	0/1:39,47:32:86:0.547:2	0/1:45,38:32:83:0.458:2
chr10	134999602	rs3008393	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,3:32:3:1.00:2	0/1:0,2:33:2:1.00:2	./.	0/1:1,15:29:16:0.938:2	0/1:0,8:29:8:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,16:32:16:1.00:2	./.	0/1:0,9:32:9:1.00:2	0/1:0,8:32:8:1.00:2
chr10	135000148	rs3810965	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,3:33:4:0.750:2	./.	./.	./.	./.	./.	./.
chr10	135000159	rs3810964	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.
chr10	135010568	rs35152544	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,44:32:75:0.587:2
chr10	135012162	rs2998139	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:28:6:1.00:2	0/1:23,22:29:45:0.489:2	0/1:24,11:25:35:0.314:2	./.	0/1:0,22:29:22:1.00:2	./.	0/1:23,11:29:34:0.324:2	0/1:20,14:25:34:0.412:2	0/1:11,12:26:23:0.522:2
chr10	135012652	rs3008388	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,5:28:21:0.238:2	0/1:17,5:29:22:0.227:2	./.	0/1:0,4:30:4:1.00:2	./.	0/1:18,7:28:25:0.280:2	./.	./.
chr10	135013871	rs62623421	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,13:31:28:0.464:2
chr10	135020707	rs140585873	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,13:28:14:0.929:2	./.	./.	./.	./.
chr10	135024207	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:35:131:0.031:2	./.	./.
chr10	135032376	rs3008370	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,49:33:85:0.576:2	./.	./.
chr10	135051562	rs2998143	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,3:30:8:0.375:2	./.
chr10	135061112	rs12355840	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,25:30:26:1.00:2	0/1:0,9:32:9:1.00:2	./.	0/1:0,19:29:19:1.00:2	0/1:0,23:30:26:1.00:2	0/1:0,20:29:20:1.00:2	./.	./.	./.	0/1:8,10:31:21:0.556:2	0/1:5,5:28:11:0.500:2
chr10	135076596	rs2230576	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:28:42:1.00:2	0/1:0,44:29:44:1.00:2	0/1:0,4:25:4:1.00:2	0/1:34,37:30:71:0.521:2	0/1:0,49:29:49:1.00:2	0/1:0,81:28:81:1.00:2	0/1:0,83:28:83:1.00:2	0/1:0,89:28:89:1.00:2	0/1:0,65:29:65:1.00:2	0/1:0,43:27:43:1.00:2	0/1:26,33:28:59:0.559:2
chr10	135082346	rs2275720	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,13:32:13:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,6:33:6:1.00:2	0/1:14,4:32:18:0.222:2	0/1:0,32:31:32:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,11:33:11:1.00:2	0/1:5,6:27:11:0.545:2	0/1:1,10:33:11:0.909:2
chr10	135084322	rs3008321	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:31:38:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,8:32:8:1.00:2	0/1:44,25:32:69:0.362:2	0/1:0,70:31:70:1.00:2	0/1:0,68:31:69:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,43:32:43:1.00:2
chr10	135085321	rs1131720	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:33:34:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,10:32:10:1.00:2	0/1:31,21:33:52:0.404:2	0/1:1,31:31:32:0.969:2	0/1:2,56:32:58:0.966:2	0/1:0,15:32:15:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,21:31:21:1.00:2
chr10	135085426	rs1131719	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,163:31:166:0.988:2	0/1:0,84:32:84:1.00:2	0/1:0,31:31:31:1.00:2	0/1:92,84:32:176:0.477:2	0/1:0,186:32:186:1.00:2	0/1:2,176:32:178:0.989:2	0/1:0,191:32:191:1.00:2	0/1:1,179:33:180:0.994:2	0/1:0,184:33:184:1.00:2	0/1:1,176:32:177:0.994:2	0/1:0,176:32:177:1.00:2
chr10	135085754	rs1131718	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:33:16:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,6:32:6:1.00:2	0/1:12,15:32:27:0.556:2	0/1:0,49:31:49:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,36:33:36:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,37:33:37:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,28:33:28:1.00:2
chr10	135086380	rs3008324	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:31:48:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,5:32:5:1.00:2	0/1:37,43:30:80:0.538:2	0/1:0,81:31:81:1.00:2	0/1:0,85:30:85:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,84:31:84:1.00:2	0/1:0,53:32:54:1.00:2	0/1:1,36:32:37:0.973:2	0/1:0,44:32:44:1.00:2
chr10	135087460	rs11101675	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:10,4:31:14:0.286:2	./.	./.	0/1:15,10:31:25:0.400:2	./.	./.	./.	./.	0/1:10,7:34:17:0.412:2	./.	./.
chr10	135087521	rs3008326	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:30:35:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,2:31:2:1.00:2	0/1:31,25:30:56:0.446:2	0/1:0,44:30:44:1.00:2	0/1:0,58:30:58:1.00:2	0/1:2,67:31:69:0.971:2	0/1:25,25:29:50:0.500:2	0/1:0,32:31:32:1.00:2	0/1:0,21:30:21:1.00:2	0/1:17,12:29:29:0.414:2
chr10	135087541	rs188248547	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,26:31:52:0.500:2	./.	./.	./.
chr10	135087542	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,14:29:25:0.560:2
chr10	135089035	rs2275725	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:31:52:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,7:32:7:1.00:2	0/1:27,21:30:48:0.438:2	0/1:0,36:30:36:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,40:30:40:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,24:29:24:1.00:2	0/1:0,21:30:21:1.00:2
chr10	135097434	rs2995326	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:30:96:1.00:2	0/1:0,58:30:58:1.00:2	0/1:2,15:31:17:0.882:2	0/1:59,88:31:147:0.599:2	0/1:2,111:29:113:0.982:2	0/1:1,134:30:135:0.993:2	0/1:4,99:30:103:0.961:2	0/1:0,112:30:112:1.00:2	0/1:0,146:31:146:1.00:2	0/1:2,116:30:118:0.983:2	0/1:1,145:30:146:0.993:2
chr10	135098621	rs35736540	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,23:32:77:0.299:2
chr10	135098672	rs3008334	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:1,29:32:30:0.967:2	0/1:0,3:31:3:1.00:2	0/1:41,43:31:84:0.512:2	0/1:0,84:30:84:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,87:31:87:1.00:2	0/1:0,70:31:70:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,59:32:59:1.00:2
chr10	135106008	rs138296826	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:27:59:0.068:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	135106153	rs202119147	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,30:30:71:0.423:2	./.	./.	./.	./.	./.	./.	./.
chr10	135112940	rs2298120	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,15:31:32:0.469:2	./.	./.	./.	./.	./.	./.	0/1:15,12:31:27:0.444:2
chr10	135123721	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,38:32:83:0.458:2	./.	./.	./.	./.	./.	./.
chr10	135160950	rs4838721	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,36:30:36:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,5:26:5:1.00:2	./.	0/1:0,48:30:48:1.00:2	0/1:0,69:30:69:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,56:30:56:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,37:31:37:1.00:2	0/1:19,24:31:43:0.558:2
chr10	135165623	rs34780987	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,31:31:61:0.508:2	./.
chr10	135165790	rs4369319	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:27:41:1.00:2	0/1:0,22:28:22:1.00:2	0/1:0,2:29:2:1.00:2	0/1:0,49:28:49:1.00:2	0/1:0,43:28:43:1.00:2	0/1:0,52:29:52:1.00:2	0/1:0,43:28:43:1.00:2	0/1:0,61:29:61:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,29:29:29:1.00:2	0/1:0,33:28:33:1.00:2
chr10	135180430	rs2230261	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:30:23:1.00:2	0/1:0,18:28:18:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,70:28:70:1.00:2	0/1:0,35:29:35:1.00:2	0/1:0,36:29:36:1.00:2	0/1:2,67:29:69:0.971:2	0/1:0,34:30:34:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,33:29:33:1.00:2
chr10	135184126	rs1049951	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:30:55:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,5:30:5:1.00:2	0/1:40,30:31:70:0.429:2	0/1:0,42:32:42:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,47:31:47:1.00:2
chr10	135186806	rs10466126	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	./.
chr10	135197498	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,13:31:32:0.406:2	./.	./.	./.	./.	./.
chr10	135204846	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,7:28:49:0.143:2	./.
chr10	135204950	rs1046175	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:29:23:1.00:2	0/1:0,16:28:16:1.00:2	0/1:0,2:34:2:1.00:2	0/1:10,11:30:21:0.524:2	0/1:0,11:28:11:1.00:2	0/1:0,38:28:38:1.00:2	0/1:0,9:27:9:1.00:2	0/1:0,13:26:13:1.00:2	0/1:0,31:28:31:1.00:2	0/1:0,20:28:20:1.00:2	0/1:0,28:28:28:1.00:2
chr10	135205009	rs1046178	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:29:52:1.00:2	0/1:0,28:29:29:1.00:2	0/1:0,5:30:5:1.00:2	0/1:19,24:29:43:0.558:2	0/1:0,43:28:43:1.00:2	0/1:0,54:29:54:1.00:2	0/1:0,15:26:15:1.00:2	0/1:0,37:27:37:1.00:2	0/1:0,55:29:55:1.00:2	0/1:1,35:27:36:0.972:2	0/1:1,57:28:58:0.983:2
chr10	135215108	rs139199152	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,29:31:45:0.644:2	./.	./.	./.	./.	./.	./.	./.
chr10	135233541	rs2255246	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:28:56:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,100:29:100:1.00:2	0/1:0,95:29:95:1.00:2	0/1:0,93:29:93:1.00:2	0/1:0,145:29:145:1.00:2	0/1:0,113:29:113:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,51:28:51:1.00:2	0/1:0,54:29:54:1.00:2
chr10	135237166	rs2492666	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,9:29:20:0.450:2	0/1:4,8:31:12:0.667:2	./.	./.	0/1:26,20:30:46:0.435:2	0/1:0,21:30:21:1.00:2	0/1:3,29:31:32:0.906:2	0/1:0,26:30:26:1.00:2	0/1:26,10:30:36:0.278:2	0/1:0,31:31:31:1.00:2	./.
chr10	135237196	rs4838682	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,12:29:24:0.500:2	0/1:6,10:29:16:0.625:2	./.	./.	0/1:33,26:31:59:0.441:2	0/1:0,30:30:30:1.00:2	0/1:2,41:29:43:0.953:2	0/1:0,30:30:31:1.00:2	0/1:35,13:28:48:0.271:2	0/1:0,35:31:35:1.00:2	./.
chr10	135345657	rs60452492	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,35:33:78:0.449:2	./.	./.	./.	./.
chr10	135345675	rs6413419	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,32:31:80:0.400:2	./.	./.	./.	./.	./.
chr10	135347397	rs915909	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:29:92:1.00:2	0/1:0,49:28:49:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,107:28:107:1.00:2	0/1:2,119:28:121:0.983:2	0/1:0,141:29:141:1.00:2	0/1:0,130:29:130:1.00:2	0/1:0,135:29:135:1.00:2	0/1:0,103:29:103:1.00:2	0/1:0,99:28:100:1.00:2	0/1:0,99:28:99:1.00:2
chr10	135351362	rs2515641	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:33:70:1.00:2	0/1:2,41:33:43:0.953:2	0/1:0,17:32:17:1.00:2	0/1:47,44:33:91:0.484:2	0/1:1,51:32:52:0.981:2	0/1:35,35:31:70:0.500:2	0/1:0,58:32:58:1.00:2	0/1:1,82:32:83:0.988:2	0/1:0,83:33:83:1.00:2	0/1:1,60:33:61:0.984:2	0/1:0,90:32:91:1.00:2
chr10	135368590	rs3737031	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:30:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	135370269	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:111,4:32:115:0.035:2	./.	./.	./.	./.	./.	./.
chr10	135370302	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,4:32:99:0.040:2	./.	./.	./.	./.	./.	./.
chr10	135370633	rs8181356	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:32:11:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	135370639	rs8181357	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:32:8:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	135372870	rs11101825	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:33:12:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	135373591	rs3813873	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,11:32:22:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	135378959	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,4:27:48:0.083:2	./.	./.	./.	./.	./.	./.
chr10	135438605	rs370574049	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,4:32:76:0.053:2	./.	./.	0/1:100,6:31:106:0.057:2	./.	0/1:70,4:34:74:0.054:2	./.
chr10	135438635	rs199913567	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,18:32:97:0.188:2	0/1:49,12:32:61:0.197:2	0/1:6,4:32:10:0.400:2	0/1:102,16:31:119:0.136:2	0/1:116,11:28:127:0.087:2	0/1:95,11:29:106:0.104:2	0/1:110,16:31:127:0.127:2	0/1:118,25:30:143:0.175:2	0/1:80,9:33:89:0.101:2	0/1:81,22:32:104:0.214:2	0/1:86,12:30:98:0.122:2
chr10	135438682	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,14:32:146:0.096:2	./.	./.
chr10	135438699	rs375116888	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:189,5:31:195:0.026:2	./.	./.	./.	./.	./.	0/1:183,5:30:188:0.027:2	./.
chr10	135438710	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,17:32:181:0.094:2
chr10	135438753	rs375000694	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:126,39:31:165:0.236:2	0/1:84,24:32:108:0.222:2	0/1:8,7:32:15:0.467:2	0/1:154,32:32:186:0.172:2	0/1:142,26:31:168:0.155:2	0/1:144,31:32:175:0.177:2	0/1:126,21:32:148:0.143:2	0/1:140,32:32:172:0.186:2	0/1:153,24:32:177:0.136:2	0/1:138,40:32:178:0.225:2	0/1:132,40:32:172:0.233:2
chr10	135438806	rs202242175	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:174,9:28:183:0.049:2	0/1:97,6:32:103:0.058:2	./.	0/1:172,9:30:181:0.050:2	0/1:157,13:31:170:0.076:2	0/1:162,13:31:175:0.074:2	0/1:158,11:31:170:0.065:2	0/1:173,20:31:193:0.104:2	0/1:150,4:33:154:0.026:2	0/1:138,8:27:146:0.055:2	0/1:172,5:30:177:0.028:2
chr10	135438810	.	G	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:150,27:29:177:0.153:2	0/1:91,8:29:99:0.081:2	./.	0/1:133,25:28:158:0.158:2	0/1:137,13:30:150:0.087:2	0/1:123,26:29:149:0.174:2	0/1:148,10:29:158:0.063:2	0/1:160,15:28:175:0.086:2	0/1:147,11:31:158:0.070:2	0/1:132,7:31:139:0.050:2	0/1:142,21:28:163:0.129:2
chr10	135438834	rs374581917	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:145,35:31:180:0.194:2	0/1:82,15:31:97:0.155:2	./.	0/1:134,33:31:167:0.198:2	0/1:156,16:30:172:0.093:2	0/1:117,38:31:155:0.245:2	0/1:167,17:32:184:0.092:2	0/1:141,29:31:170:0.171:2	0/1:159,21:32:180:0.117:2	0/1:152,21:32:173:0.121:2	0/1:132,28:31:160:0.175:2
chr10	135438836	rs199658046	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:163,4:32:167:0.024:2	./.	./.	./.	0/1:167,5:31:172:0.029:2	./.	./.	./.
chr10	135438888	rs150376644	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:139,29:32:168:0.173:2	0/1:128,30:32:158:0.190:2	0/1:14,3:32:17:0.176:2	0/1:151,22:33:173:0.127:2	0/1:171,14:32:185:0.076:2	0/1:125,31:33:156:0.199:2	0/1:173,14:34:187:0.075:2	0/1:141,30:32:171:0.175:2	0/1:157,11:34:168:0.065:2	0/1:161,19:32:180:0.106:2	0/1:144,28:33:172:0.163:2
chr10	135438929	rs201901202	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:126,8:34:134:0.060:2	0/1:122,17:32:139:0.122:2	./.	./.	./.	0/1:124,9:34:133:0.068:2	./.	0/1:135,13:33:148:0.088:2	./.	./.	0/1:131,12:33:143:0.084:2
chr10	135438967	rs145018822	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:113,8:34:121:0.066:2	./.	./.	./.	0/1:113,8:33:121:0.066:2	./.	./.	./.	./.	./.
chr10	135438977	rs79631365	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:112,8:29:121:0.067:2	0/1:95,13:29:108:0.120:2	./.	0/1:138,9:32:147:0.061:2	./.	0/1:113,9:31:123:0.074:2	0/1:139,6:28:145:0.041:2	./.	0/1:140,7:30:147:0.048:2	./.	0/1:119,7:32:126:0.056:2
chr10	135439015	rs75470891	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:111,5:31:117:0.043:2	0/1:90,4:29:94:0.043:2	./.	0/1:145,4:32:149:0.027:2	./.	0/1:121,4:31:125:0.032:2	./.	0/1:133,4:32:137:0.029:2	./.	./.	0/1:137,6:33:143:0.042:2
chr10	135439049	rs200347477	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:125,14:33:139:0.101:2	0/1:69,18:33:87:0.207:2	0/1:12,3:32:15:0.200:2	0/1:171,9:32:180:0.050:2	0/1:130,7:31:137:0.051:2	0/1:140,16:30:156:0.103:2	0/1:127,5:31:132:0.038:2	0/1:171,6:31:177:0.034:2	0/1:171,7:31:178:0.039:2	0/1:119,4:31:123:0.033:2	0/1:145,14:32:159:0.088:2
chr10	135439445	rs369894857	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,7:29:171:0.041:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	135439457	rs201371219	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:161,8:29:169:0.047:2	0/1:172,6:32:178:0.034:2	./.	0/1:176,6:34:182:0.033:2	./.	0/1:180,6:30:186:0.032:2	./.	0/1:179,8:33:188:0.043:2	./.	0/1:158,8:28:166:0.048:2	0/1:144,10:33:155:0.065:2
chr10	135439739	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:167,5:33:172:0.029:2	0/1:152,7:32:159:0.044:2	./.	./.	0/1:175,9:32:184:0.049:2	0/1:155,9:32:164:0.055:2	0/1:176,7:30:184:0.038:2	0/1:165,12:32:177:0.068:2	0/1:146,18:32:164:0.110:2	0/1:178,6:32:185:0.033:2	0/1:170,5:33:175:0.029:2
chr10	135439746	.	G	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:156,12:32:168:0.071:2	0/1:143,13:32:156:0.083:2	0/1:25,3:32:28:0.107:2	0/1:171,7:32:178:0.039:2	./.	0/1:159,6:32:165:0.036:2	0/1:169,8:33:177:0.045:2	0/1:166,15:31:181:0.083:2	0/1:156,5:33:161:0.031:2	0/1:163,12:33:175:0.069:2	0/1:160,8:32:168:0.048:2
chr10	135439770	.	T	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:138,4:33:142:0.028:2	0/1:139,5:31:144:0.035:2	./.	./.	0/1:148,8:32:156:0.051:2	0/1:129,6:32:135:0.044:2	0/1:145,5:33:150:0.033:2	0/1:143,7:27:150:0.047:2	0/1:134,10:33:144:0.069:2	0/1:151,5:34:156:0.032:2	./.
chr10	135439803	rs202189720	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:75,18:32:93:0.194:2	0/1:100,13:32:113:0.115:2	0/1:12,8:32:20:0.400:2	0/1:84,19:32:103:0.184:2	0/1:78,23:31:101:0.228:2	0/1:49,42:32:91:0.462:2	0/1:77,18:32:95:0.189:2	0/1:74,25:32:99:0.253:2	0/1:62,41:33:103:0.398:2	0/1:78,29:32:107:0.271:2	0/1:87,21:32:108:0.194:2
chr10	135439804	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:104,6:34:110:0.055:2	./.	./.	./.	./.	./.	0/1:91,5:32:96:0.052:2	./.	./.	0/1:102,4:33:106:0.038:2
chr10	135439817	rs200391649	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:75,8:31:83:0.096:2	0/1:69,9:33:78:0.115:2	./.	0/1:90,4:31:94:0.043:2	./.	0/1:64,8:31:72:0.111:2	0/1:84,4:32:88:0.045:2	0/1:80,7:32:87:0.080:2	./.	./.	0/1:85,6:31:91:0.066:2
chr10	135439822	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:32:77:0.052:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr10	135440121	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:32:149:0.027:2
chr10	135440122	rs200811760	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:152,13:33:165:0.079:2	./.	./.	0/1:133,11:33:145:0.076:2	0/1:126,13:31:139:0.094:2	0/1:104,11:30:115:0.096:2	0/1:119,4:33:123:0.033:2	0/1:100,10:32:110:0.091:2	0/1:141,18:34:159:0.113:2	0/1:124,12:32:136:0.088:2	0/1:130,20:33:150:0.133:2
chr10	135440159	rs199700359	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:170,18:31:189:0.096:2	0/1:152,26:31:178:0.146:2	0/1:31,7:31:38:0.184:2	0/1:180,16:31:197:0.082:2	0/1:167,23:30:191:0.121:2	0/1:180,13:30:193:0.067:2	0/1:179,19:31:198:0.096:2	0/1:173,23:30:196:0.117:2	./.	0/1:171,25:31:196:0.128:2	0/1:171,22:31:193:0.114:2
chr10	135440203	rs200661929	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,10:28:82:0.122:2	./.	./.	./.	./.	./.	./.	./.	./.
chr10	135440211	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:32:179:0.022:2	./.	./.	./.	./.
chr10	135440213	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:32:175:0.023:2	./.	./.	./.	./.
chr10	135440214	rs144521881	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:147,26:32:173:0.150:2	0/1:147,29:32:176:0.165:2	0/1:71,20:31:91:0.220:2	0/1:147,25:31:172:0.145:2	0/1:152,26:31:178:0.146:2	0/1:144,25:32:169:0.148:2	0/1:152,22:32:175:0.126:2	0/1:146,26:31:172:0.151:2	0/1:160,13:32:173:0.075:2	0/1:132,40:32:172:0.233:2	0/1:132,31:31:163:0.190:2
chr10	135440216	rs151005651	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:150,26:29:176:0.148:2	0/1:146,29:31:175:0.166:2	0/1:71,20:30:91:0.220:2	0/1:142,25:28:167:0.150:2	0/1:152,26:29:178:0.146:2	0/1:144,25:31:169:0.148:2	0/1:150,23:30:173:0.133:2	0/1:144,24:29:168:0.143:2	0/1:161,13:31:174:0.075:2	0/1:129,39:30:168:0.232:2	0/1:131,31:29:162:0.191:2
chr10	135440222	rs201375291	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:140,27:30:167:0.162:2	0/1:142,32:31:174:0.184:2	0/1:83,15:29:99:0.153:2	0/1:139,26:31:166:0.158:2	0/1:148,27:30:176:0.154:2	0/1:147,18:29:166:0.109:2	0/1:145,27:31:172:0.157:2	0/1:145,14:30:159:0.088:2	0/1:140,34:32:174:0.195:2	0/1:149,22:31:171:0.129:2	0/1:133,20:30:155:0.131:2
chr11	180225	rs13377545	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:98,88:33:187:0.473:2	0/1:117,74:32:191:0.387:2	0/1:81,45:31:126:0.357:2	0/1:69,122:34:191:0.639:2	0/1:111,87:33:198:0.439:2	0/1:97,96:33:193:0.497:2	0/1:116,55:33:172:0.322:2	0/1:118,58:33:176:0.330:2	0/1:102,90:34:192:0.469:2	0/1:129,28:33:157:0.178:2	0/1:96,69:33:165:0.418:2
chr11	180231	rs201265508	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:172,12:27:184:0.065:2	0/1:163,27:28:190:0.142:2	0/1:111,14:28:125:0.112:2	./.	0/1:184,8:30:193:0.042:2	0/1:178,13:31:191:0.068:2	0/1:143,26:29:169:0.154:2	0/1:138,27:29:165:0.164:2	0/1:186,5:32:191:0.026:2	0/1:122,23:26:146:0.159:2	0/1:146,10:28:156:0.064:2
chr11	180235	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:119,5:30:124:0.040:2	0/1:160,17:29:177:0.096:2	./.	0/1:172,20:30:192:0.104:2	0/1:144,28:31:172:0.163:2	0/1:159,13:31:172:0.076:2	0/1:174,15:31:189:0.079:2	./.	0/1:126,31:30:157:0.197:2
chr11	180257	rs199807399	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:101,6:33:107:0.056:2	0/1:184,12:34:196:0.061:2	0/1:170,25:32:195:0.128:2	0/1:175,20:34:195:0.103:2	0/1:157,13:33:171:0.076:2	./.	0/1:177,13:32:190:0.068:2	0/1:144,12:33:156:0.077:2	0/1:156,10:34:166:0.060:2
chr11	180258	rs200735701	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,21:30:102:0.206:2	./.	./.	./.	0/1:163,9:28:172:0.052:2	0/1:162,13:27:175:0.074:2	./.	0/1:96,58:28:154:0.377:2	0/1:157,9:28:167:0.054:2
chr11	180261	rs201966829	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:129,38:33:167:0.228:2	0/1:121,30:32:151:0.199:2	./.	0/1:179,17:32:196:0.087:2	./.	./.	0/1:154,17:31:171:0.099:2	0/1:156,19:32:175:0.109:2	./.	./.	./.
chr11	180283	rs199568356	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:178,6:29:185:0.033:2	./.	0/1:58,5:33:63:0.079:2	./.	./.	./.	0/1:137,18:32:155:0.116:2	0/1:157,8:28:165:0.048:2	./.	0/1:128,20:31:148:0.135:2	0/1:163,7:30:170:0.041:2
chr11	180302	.	G	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,7:28:148:0.048:2	0/1:150,18:27:169:0.107:2	./.	0/1:84,65:27:149:0.436:2	0/1:139,15:25:154:0.097:2
chr11	180318	rs201117392	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:143,36:31:179:0.201:2	0/1:95,29:32:124:0.234:2	./.	0/1:118,36:29:154:0.234:2	./.	0/1:125,46:30:171:0.269:2	0/1:87,34:31:121:0.281:2	./.	0/1:113,42:31:155:0.271:2	./.	0/1:111,42:31:154:0.275:2
chr11	180329	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,10:17:161:0.063:2	./.	./.	./.	./.	0/1:138,10:16:150:0.068:2	./.	./.	./.	./.	./.
chr11	193096	rs2280539	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,9:29:56:0.161:2	./.	0/1:0,9:29:9:1.00:2	0/1:46,30:29:76:0.395:2	0/1:99,16:30:116:0.139:2	0/1:19,68:29:87:0.782:2	0/1:90,31:30:121:0.256:2	./.	0/1:19,62:30:81:0.765:2	0/1:40,27:28:67:0.403:2	0/1:17,43:28:60:0.717:2
chr11	193112	rs7951297	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,7:30:49:0.143:2	0/1:38,4:33:42:0.095:2	./.	0/1:61,10:32:71:0.141:2	0/1:94,17:32:111:0.153:2	0/1:63,19:32:82:0.232:2	0/1:101,14:32:115:0.122:2	./.	0/1:65,17:31:82:0.207:2	./.	0/1:48,10:31:58:0.172:2
chr11	193146	rs61736219	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,7:30:34:0.206:2	./.
chr11	193722	rs2294082	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,15:30:94:0.160:2	0/1:51,20:28:71:0.282:2	0/1:66,15:29:81:0.185:2	./.	./.	0/1:92,28:31:120:0.233:2	./.	./.
chr11	193747	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,17:32:93:0.183:2	./.	./.	./.	./.
chr11	193863	rs2294081	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,32:31:49:0.653:2	0/1:18,14:32:33:0.438:2	0/1:1,10:32:11:0.909:2	0/1:33,54:32:87:0.621:2	0/1:14,65:31:79:0.823:2	0/1:15,49:32:64:0.766:2	0/1:37,63:32:100:0.630:2	0/1:20,77:32:97:0.794:2	0/1:20,60:33:81:0.750:2	0/1:0,69:32:69:1.00:2	0/1:26,57:32:83:0.687:2
chr11	193865	rs2686894	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,32:32:49:0.653:2	0/1:19,14:32:33:0.424:2	0/1:3,8:33:11:0.727:2	0/1:53,34:33:87:0.391:2	0/1:40,39:31:79:0.494:2	0/1:31,32:32:63:0.508:2	0/1:63,36:33:99:0.364:2	0/1:51,47:32:98:0.480:2	0/1:31,50:33:81:0.617:2	0/1:36,34:33:70:0.486:2	0/1:50,33:33:83:0.398:2
chr11	194441	rs61997072	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,35:31:179:0.196:2	0/1:139,24:31:163:0.147:2	./.	./.	./.	0/1:117,37:32:154:0.240:2	./.	./.
chr11	197337	rs3802984	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,29:30:51:0.569:2	0/1:13,9:31:22:0.409:2	0/1:27,17:29:44:0.386:2	./.	./.	0/1:13,12:30:25:0.480:2	./.	./.
chr11	197607	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:33:63:0.063:2	./.	./.
chr11	199492	rs72878024	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:12,14:30:26:0.538:2	0/1:9,10:29:19:0.526:2	./.	./.	./.	./.	./.	0/1:27,17:30:44:0.386:2	./.	./.	./.
chr11	209784	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:34:108:0.037:2	./.	./.
chr11	210576	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,8:30:107:0.075:2	./.	./.	./.	./.	./.	./.	./.
chr11	210660	rs34925440	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,31:31:80:0.388:2	./.	./.	./.
chr11	211279	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:34:90:0.044:2	./.
chr11	233067	rs11246020	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,77:30:175:0.440:2	0/1:91,72:32:163:0.442:2	./.	./.	./.	./.
chr11	233212	rs11555236	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,7:32:23:0.304:2	0/1:13,15:32:28:0.536:2	./.	./.	./.	./.
chr11	236091	rs28365927	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,3:29:13:0.231:2	0/1:8,9:32:17:0.529:2	0/1:10,3:32:13:0.231:2	./.	./.	0/1:12,7:33:19:0.368:2	0/1:11,3:33:14:0.214:2	./.
chr11	237087	rs1045288	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,12:33:26:0.462:2	0/1:12,11:33:23:0.478:2	0/1:4,5:32:9:0.556:2	0/1:34,23:32:57:0.404:2	0/1:44,30:33:75:0.405:2	0/1:1,53:32:54:0.981:2	0/1:2,50:33:52:0.962:2	0/1:0,70:32:70:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,33:32:33:1.00:2	0/1:25,13:33:38:0.342:2
chr11	244106	rs10902112	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:21,5:32:26:0.192:2	./.	./.	./.	0/1:0,9:33:9:1.00:2	0/1:0,6:34:6:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,8:32:8:1.00:2	0/1:71,12:31:83:0.145:2
chr11	244108	rs7107362	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:21,5:32:26:0.192:2	./.	./.	./.	0/1:0,9:32:9:1.00:2	0/1:0,6:34:6:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,8:33:8:1.00:2	0/1:73,12:33:85:0.141:2
chr11	244115	rs7128044	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:19,3:31:22:0.136:2	./.	./.	./.	0/1:0,6:30:6:1.00:2	0/1:0,3:29:3:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,6:27:6:1.00:2	0/1:0,6:30:6:1.00:2	0/1:76,9:30:85:0.106:2
chr11	244167	rs1128320	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:52,4:31:56:0.071:2	./.	./.	./.	0/1:29,3:31:32:0.094:2	0/1:0,8:33:8:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,6:29:6:1.00:2	0/1:72,5:30:77:0.065:2
chr11	244171	rs1128321	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:50,4:35:54:0.074:2	0/1:24,3:33:27:0.111:2	./.	./.	0/1:33,4:33:37:0.108:2	0/1:0,8:34:8:1.00:2	0/1:0,4:33:4:1.00:2	0/1:1,9:34:10:0.900:2	0/1:0,11:34:11:1.00:2	0/1:0,7:32:7:1.00:2	0/1:67,5:34:72:0.069:2
chr11	244197	rs1128322	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,5:28:49:0.102:2	0/1:21,6:27:27:0.222:2	0/1:9,3:30:12:0.250:2	0/1:44,4:29:48:0.083:2	0/1:24,5:29:29:0.172:2	0/1:0,16:28:16:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,10:29:10:1.00:2	0/1:49,10:27:59:0.169:2
chr11	244414	rs2272565	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:115,79:34:194:0.407:2	0/1:79,76:33:155:0.490:2	0/1:20,12:32:32:0.375:2	0/1:118,78:33:196:0.398:2	0/1:146,53:32:199:0.266:2	0/1:5,189:32:194:0.974:2	0/1:1,194:32:195:0.995:2	0/1:1,193:32:194:0.995:2	0/1:0,196:33:196:1.00:2	0/1:1,188:33:189:0.995:2	0/1:110,85:33:195:0.436:2
chr11	247378	rs142720939	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,61:32:132:0.466:2	0/1:46,40:31:86:0.465:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	250877	rs12793187	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,13:30:21:0.619:2	./.	./.	./.	./.
chr11	278534	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:28:79:0.051:2
chr11	279558	rs199475796	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.
chr11	280221	rs6421985	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,5:33:5:1.00:2	./.	0/1:0,8:31:8:1.00:2	./.	./.	./.
chr11	280464	rs77447196	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:32:6:0.500:2	./.	./.	0/1:1,2:34:3:0.667:2	./.	./.
chr11	280816	rs7482965	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,36:30:84:0.429:2	0/1:23,13:31:36:0.361:2	0/1:0,8:29:8:1.00:2	0/1:0,89:30:89:1.00:2	0/1:0,117:30:118:1.00:2	0/1:0,99:30:99:1.00:2	0/1:0,99:30:99:1.00:2	0/1:0,93:30:93:1.00:2	0/1:44,29:31:73:0.397:2	0/1:1,76:30:77:0.987:2	0/1:0,48:31:48:1.00:2
chr11	280817	rs7482279	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,36:32:84:0.429:2	0/1:24,13:32:37:0.351:2	0/1:0,8:31:8:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,118:32:118:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,93:32:93:1.00:2	0/1:44,29:33:73:0.397:2	0/1:1,76:33:77:0.987:2	0/1:0,48:32:48:1.00:2
chr11	284257	rs11246050	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,26:32:71:0.366:2	./.	./.	0/1:1,62:33:63:0.984:2	./.	0/1:14,30:32:44:0.682:2
chr11	284299	rs7108261	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,29:29:64:0.453:2	./.	./.	./.
chr11	284341	rs7108246	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,11:32:29:0.379:2	./.	./.	0/1:12,6:32:18:0.333:2	./.
chr11	284538	rs6598047	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,27:31:61:0.443:2	0/1:16,10:31:26:0.385:2	0/1:0,8:32:8:1.00:2	0/1:92,4:34:96:0.042:2	0/1:53,15:30:68:0.221:2	0/1:51,34:30:85:0.400:2	0/1:0,34:29:34:1.00:2	0/1:41,25:29:66:0.379:2	0/1:34,23:31:57:0.404:2	0/1:0,45:31:45:1.00:2	0/1:1,24:30:25:0.960:2
chr11	284563	rs150898666	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:33:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	290466	rs182102503	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,10:31:22:0.455:2	./.	./.	./.	./.	./.	./.	./.
chr11	290494	rs3809110	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,13:32:20:0.650:2	0/1:7,18:33:25:0.720:2	./.	./.
chr11	290816	rs10902120	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,17:27:30:0.567:2	0/1:13,5:29:18:0.278:2	./.	0/1:14,12:32:26:0.462:2	0/1:14,11:30:25:0.440:2	0/1:0,11:30:11:1.00:2	0/1:1,27:30:28:0.964:2	0/1:16,9:29:25:0.360:2	0/1:0,7:31:7:1.00:2	./.	0/1:0,18:29:18:1.00:2
chr11	290891	rs72636977	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,28:31:60:0.467:2	./.	./.	./.	./.	./.	./.
chr11	290918	rs72636978	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,40:30:82:0.488:2	./.	./.	./.	./.	./.	./.
chr11	293188	rs12801980	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,5:33:11:0.455:2	0/1:33,30:33:63:0.476:2	0/1:0,100:32:100:1.00:2	0/1:46,26:31:72:0.361:2	./.	0/1:55,53:33:108:0.491:2	0/1:28,30:33:58:0.517:2	0/1:21,25:32:46:0.543:2	0/1:19,25:33:44:0.568:2
chr11	299411	rs57285449	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,41:30:41:1.00:2	0/1:14,11:31:25:0.440:2	0/1:0,33:30:33:1.00:2	0/1:0,40:31:40:1.00:2	0/1:7,12:30:19:0.632:2	0/1:6,12:30:18:0.667:2	./.
chr11	308290	rs1058900	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,21:29:63:0.333:2	0/1:20,32:29:52:0.615:2	0/1:7,3:30:10:0.300:2	0/1:0,74:27:74:1.00:2	./.	0/1:2,97:28:99:0.980:2	./.	0/1:0,117:29:118:1.00:2	0/1:46,49:30:96:0.516:2	./.	0/1:0,88:28:88:1.00:2
chr11	308314	rs14408	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:46,21:30:67:0.313:2	0/1:18,24:28:42:0.571:2	./.	0/1:1,73:28:74:0.986:2	./.	./.	./.	0/1:90,35:29:125:0.280:2	./.	./.	0/1:58,24:28:82:0.293:2
chr11	308354	rs17174550	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,24:29:62:0.387:2	./.	./.	./.	./.	./.	./.	./.
chr11	308363	rs1058935	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,25:30:70:0.357:2	0/1:32,21:28:53:0.396:2	0/1:7,8:28:15:0.533:2	0/1:0,57:29:57:1.00:2	./.	0/1:0,98:29:98:1.00:2	./.	0/1:0,142:29:142:1.00:2	0/1:72,51:30:123:0.415:2	./.	0/1:0,76:29:76:1.00:2
chr11	308426	rs1058964	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,29:32:77:0.377:2	0/1:46,26:32:72:0.361:2	0/1:11,11:32:22:0.500:2	0/1:0,112:33:112:1.00:2	./.	0/1:0,117:31:117:1.00:2	0/1:144,5:32:149:0.034:2	0/1:0,147:32:147:1.00:2	0/1:87,49:33:136:0.360:2	./.	0/1:0,67:32:67:1.00:2
chr11	309127	rs1059091	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:103,82:29:185:0.443:2	0/1:66,49:30:115:0.426:2	./.	0/1:95,98:30:193:0.508:2	./.	./.	./.	0/1:99,98:28:197:0.497:2	./.	./.	0/1:91,107:29:198:0.540:2
chr11	314207	rs9667990	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:30:75:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,82:30:82:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,77:31:77:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,82:31:82:1.00:2	0/1:1,75:31:77:0.987:2	0/1:0,68:31:68:1.00:2
chr11	315018	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:186,4:33:191:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr11	320606	rs199749095	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:55,5:29:60:0.083:2	0/1:41,4:30:45:0.089:2	./.	0/1:129,15:30:144:0.104:2	./.	./.	./.	0/1:126,5:30:131:0.038:2	./.	./.	./.
chr11	320649	rs11553885	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:30,6:32:36:0.167:2	./.	./.	./.	./.	./.	./.	0/1:89,6:31:95:0.063:2	./.	./.	./.
chr11	372157	rs34063493	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:31:7:1.00:2	./.	./.	./.	0/1:49,44:31:93:0.473:2	0/1:3,89:30:92:0.967:2	./.	./.	0/1:36,34:31:70:0.486:2
chr11	372700	rs35475866	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:26:7:1.00:2	./.	./.	./.	0/1:27,38:27:65:0.585:2	0/1:4,47:26:51:0.922:2	./.	./.	0/1:26,25:26:51:0.490:2
chr11	375535	rs117222258	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,8:33:29:0.276:2	./.	./.	./.	./.	./.	./.	./.
chr11	380315	rs117291242	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,18:31:35:0.514:2	0/1:10,8:32:18:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	396915	rs12419281	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,11:31:11:1.00:2	0/1:0,5:31:5:1.00:2	./.	0/1:0,19:30:19:1.00:2	0/1:0,13:30:13:1.00:2	0/1:1,5:30:6:0.833:2	./.	./.	./.	./.	0/1:5,3:31:8:0.375:2
chr11	397045	rs113545301	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.
chr11	400024	rs151201080	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,42:30:77:0.545:2	./.	./.	./.	./.	./.	0/1:30,34:31:64:0.531:2
chr11	400040	rs1128982	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:14,18:30:32:0.563:2	0/1:10,9:31:19:0.474:2	./.	./.	0/1:31,32:30:63:0.508:2	./.	./.	./.	0/1:19,33:31:52:0.635:2	./.	0/1:28,28:29:56:0.500:2
chr11	400109	rs8858	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,18:32:18:1.00:2	0/1:1,8:31:9:0.889:2	./.	0/1:0,8:31:8:1.00:2	0/1:0,15:31:15:1.00:2	0/1:5,3:31:8:0.375:2	0/1:6,4:28:10:0.400:2	0/1:0,9:30:9:1.00:2	0/1:4,5:32:9:0.556:2	./.	0/1:0,12:32:12:1.00:2
chr11	403980	rs11748	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:0,30:32:30:1.00:2	0/1:7,6:31:13:0.462:2	0/1:0,88:31:88:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,99:31:99:1.00:2	./.	./.	0/1:28,21:33:49:0.429:2	./.	0/1:3,23:31:26:0.885:2
chr11	404317	rs1134578	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,37:29:38:0.974:2	0/1:0,22:31:22:1.00:2	0/1:4,6:25:10:0.600:2	0/1:0,89:30:89:1.00:2	0/1:1,76:31:77:0.987:2	0/1:1,66:29:67:0.985:2	./.	./.	0/1:28,36:31:64:0.563:2	./.	0/1:31,21:30:52:0.404:2
chr11	406043	rs7947	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:29:16:1.00:2	0/1:1,12:31:13:0.923:2	0/1:0,5:31:5:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,29:29:29:1.00:2	0/1:14,13:28:27:0.481:2	0/1:1,39:29:40:0.975:2	0/1:17,13:30:30:0.433:2	./.	0/1:0,31:30:31:1.00:2
chr11	406458	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:31:125:0.032:2	./.	./.	./.
chr11	406473	rs3087588	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:28:57:1.00:2	0/1:0,26:29:26:1.00:2	0/1:0,7:30:7:1.00:2	0/1:3,91:29:94:0.968:2	0/1:0,74:28:74:1.00:2	0/1:0,87:29:87:1.00:2	0/1:89,45:29:134:0.336:2	0/1:0,107:29:107:1.00:2	0/1:42,34:31:76:0.447:2	./.	0/1:0,77:29:77:1.00:2
chr11	406483	rs3210908	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:26:52:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,6:29:6:1.00:2	0/1:2,85:29:87:0.977:2	0/1:0,66:28:66:1.00:2	0/1:0,88:29:88:1.00:2	0/1:82,44:29:126:0.349:2	0/1:0,100:28:101:1.00:2	0/1:36,34:29:70:0.486:2	./.	0/1:0,72:29:72:1.00:2
chr11	408174	rs117739035	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,14:30:31:0.452:2	0/1:18,11:31:29:0.379:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	408742	rs139033656	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,21:30:46:0.457:2	./.	./.	./.	./.	./.
chr11	418572	rs373161873	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,4:31:109:0.037:2	./.	./.	./.	./.	./.	./.
chr11	420563	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,6:32:26:0.231:2	./.	./.	./.	./.
chr11	428385	rs10794323	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:30:42:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,64:30:64:1.00:2	0/1:40,33:30:74:0.452:2	0/1:0,42:29:43:1.00:2	0/1:1,54:30:55:0.982:2	0/1:0,68:30:68:1.00:2	0/1:25,28:31:53:0.528:2	0/1:26,26:29:52:0.500:2	0/1:0,33:30:33:1.00:2
chr11	428489	rs10794324	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,11:29:35:0.314:2	0/1:13,9:27:22:0.409:2	0/1:0,5:31:5:1.00:2	0/1:0,33:29:33:1.00:2	0/1:53,20:29:74:0.274:2	0/1:0,28:29:28:1.00:2	0/1:2,35:29:37:0.946:2	0/1:0,37:29:37:1.00:2	./.	0/1:15,14:29:29:0.483:2	0/1:0,23:28:23:1.00:2
chr11	429648	rs116804097	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,22:33:51:0.431:2	./.	./.	./.
chr11	429659	rs7111432	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:28:38:1.00:2	0/1:0,24:31:24:1.00:2	0/1:1,3:26:4:0.750:2	0/1:23,17:30:41:0.425:2	0/1:12,28:30:40:0.700:2	0/1:0,33:30:33:1.00:2	0/1:7,24:31:31:0.774:2	./.	0/1:23,32:32:55:0.582:2	0/1:24,15:29:39:0.385:2	0/1:8,11:30:19:0.579:2
chr11	430339	rs113926353	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,33:32:56:0.589:2	0/1:7,5:25:12:0.417:2	./.	./.	./.	0/1:33,25:33:58:0.431:2	./.	./.	./.	./.	./.
chr11	431834	rs55914928	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,19:26:19:1.00:2	0/1:0,20:29:20:1.00:2	./.	0/1:0,13:27:13:1.00:2	0/1:20,15:26:35:0.429:2	0/1:0,26:29:26:1.00:2	0/1:0,29:27:29:1.00:2	0/1:0,23:26:23:1.00:2	0/1:11,8:28:19:0.421:2	0/1:18,8:29:26:0.308:2	0/1:1,15:25:16:0.938:2
chr11	433387	rs7395065	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:33:69:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,107:32:107:1.00:2	0/1:0,135:31:135:1.00:2	0/1:0,127:31:127:1.00:2	0/1:0,149:31:149:1.00:2	0/1:0,154:31:154:1.00:2	0/1:0,120:31:120:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,90:31:90:1.00:2
chr11	433867	rs12575508	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:26,26:31:53:0.500:2	0/1:19,19:31:38:0.500:2	./.	0/1:33,51:29:84:0.607:2	./.	0/1:1,73:30:75:0.986:2	./.	./.	./.	0/1:32,36:30:68:0.529:2	./.
chr11	490035	rs61742833	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,54:30:78:0.692:2	./.	./.	./.	./.	./.	./.
chr11	494942	rs7983	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,19:30:53:0.358:2	0/1:12,19:31:31:0.613:2	./.	0/1:41,31:29:72:0.431:2	0/1:54,54:30:108:0.500:2	0/1:0,103:30:103:1.00:2	./.	./.	./.	0/1:1,57:30:58:0.983:2	./.
chr11	499059	rs17584	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:28,34:30:62:0.548:2	0/1:15,18:31:33:0.545:2	./.	0/1:37,53:30:90:0.589:2	./.	0/1:2,103:30:105:0.981:2	./.	./.	./.	0/1:24,33:30:57:0.579:2	./.
chr11	499066	rs17849355	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,54:32:91:0.593:2	./.	./.	./.	./.	./.	./.	./.
chr11	499120	rs17585	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:30:14:0.571:2	./.	0/1:88,54:31:142:0.380:2	./.	./.	./.	./.	./.	./.
chr11	499151	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,45:32:71:0.634:2	./.	./.	./.	./.	./.	./.
chr11	534242	rs12628	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,24:33:49:0.490:2	0/1:17,13:32:30:0.433:2	./.	0/1:34,25:32:59:0.424:2	0/1:52,43:32:95:0.453:2	0/1:0,50:32:50:1.00:2	./.	./.	0/1:24,20:33:44:0.455:2	0/1:0,46:33:46:1.00:2	./.
chr11	541601	rs116866926	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,43:31:87:0.494:2	./.	./.	./.	0/1:27,32:32:59:0.542:2	./.
chr11	549959	rs7942030	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:32:28:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,9:31:9:1.00:2	0/1:52,35:31:87:0.402:2	0/1:0,114:31:114:1.00:2	0/1:44,39:31:83:0.470:2	0/1:2,79:31:81:0.975:2	0/1:0,112:31:112:1.00:2	0/1:0,64:32:64:1.00:2	0/1:27,28:32:55:0.509:2	0/1:0,45:32:45:1.00:2
chr11	551235	rs35537971	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,22:27:37:0.595:2	0/1:5,8:32:13:0.615:2	./.	./.	0/1:6,19:30:25:0.760:2	0/1:0,39:29:39:1.00:2	./.	./.	./.	0/1:1,39:29:40:0.975:2	./.
chr11	551753	rs4963198	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,26:29:41:0.634:2	0/1:14,8:32:22:0.364:2	0/1:0,5:31:5:1.00:2	0/1:22,12:31:34:0.353:2	0/1:7,9:30:16:0.563:2	./.	0/1:1,19:31:20:0.950:2	0/1:1,26:32:27:0.963:2	0/1:0,44:32:44:1.00:2	./.	0/1:0,37:31:37:1.00:2
chr11	554018	rs112033363	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,56:31:93:0.602:2	./.	./.
chr11	554047	rs12793222	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,18:33:37:0.486:2	0/1:17,4:32:21:0.190:2	./.	./.	0/1:20,27:32:47:0.574:2	0/1:0,56:31:56:1.00:2	./.	./.	./.	0/1:0,39:32:39:1.00:2	./.
chr11	554166	rs10902170	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:33:19:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,2:32:2:1.00:2	0/1:7,7:33:14:0.500:2	0/1:0,15:31:15:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,29:32:30:1.00:2	0/1:8,17:34:25:0.680:2	0/1:0,7:30:7:1.00:2	0/1:0,15:31:15:1.00:2
chr11	554214	rs10902171	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,19:32:19:1.00:2	0/1:0,10:32:10:1.00:2	./.	0/1:10,6:32:16:0.375:2	0/1:0,20:32:20:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,42:32:42:1.00:2	0/1:12,15:34:27:0.556:2	0/1:0,10:32:10:1.00:2	0/1:0,19:32:19:1.00:2
chr11	556521	rs28406183	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:28:39:1.00:2	0/1:0,11:27:11:1.00:2	0/1:0,5:30:5:1.00:2	0/1:31,15:28:46:0.326:2	0/1:0,32:29:32:1.00:2	0/1:0,58:29:58:1.00:2	0/1:0,26:29:26:1.00:2	0/1:0,27:27:27:1.00:2	0/1:0,35:28:35:1.00:2	0/1:0,40:28:40:1.00:2	0/1:0,43:27:43:1.00:2
chr11	556857	rs7938269	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,15:30:16:0.938:2	0/1:0,12:31:12:1.00:2	0/1:0,4:34:4:1.00:2	0/1:15,10:31:25:0.400:2	0/1:0,27:33:27:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,10:28:10:1.00:2	0/1:0,14:30:14:1.00:2
chr11	557584	rs11822657	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,33:32:64:0.516:2	./.	./.
chr11	557989	rs7129811	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,21:31:49:0.429:2	0/1:15,14:31:29:0.483:2	./.	0/1:37,22:31:59:0.373:2	0/1:39,42:30:82:0.519:2	./.	0/1:0,75:31:75:1.00:2	0/1:4,91:31:95:0.958:2	0/1:34,26:31:60:0.433:2	./.	0/1:21,26:31:47:0.553:2
chr11	558165	rs79820513	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,12:28:30:0.400:2	0/1:13,10:29:23:0.435:2	./.	./.	./.	0/1:0,49:29:49:1.00:2	./.	./.	./.	0/1:28,22:30:50:0.440:2	./.
chr11	558884	rs2061586	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:30:43:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,11:31:11:1.00:2	0/1:34,28:29:62:0.452:2	0/1:0,58:30:58:1.00:2	0/1:0,71:30:71:1.00:2	0/1:0,29:31:29:1.00:2	0/1:1,59:30:60:0.983:2	0/1:13,22:29:35:0.629:2	0/1:0,56:30:56:1.00:2	0/1:0,27:28:27:1.00:2
chr11	560448	rs113263596	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	562219	rs2242183	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,34:31:76:0.447:2	0/1:56,53:31:109:0.486:2	./.	./.	./.
chr11	562421	rs2242182	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,15:31:27:0.556:2
chr11	562437	rs11246189	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,14:32:34:0.412:2	0/1:8,11:32:19:0.579:2	./.	./.	0/1:30,32:32:62:0.516:2	0/1:0,61:32:61:1.00:2	./.	./.	./.	0/1:0,47:32:47:1.00:2	./.
chr11	563227	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:30:15:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	563257	rs34954482	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,27:31:45:0.600:2
chr11	563400	rs34822421	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,7:30:17:0.412:2	./.	./.	./.	./.	./.	./.
chr11	563649	rs7109278	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,6:32:28:0.214:2
chr11	587425	rs12800061	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:38,44:32:82:0.537:2	0/1:14,24:32:38:0.632:2	./.	./.	0/1:85,66:31:151:0.437:2	0/1:1,123:31:125:0.992:2	./.	./.	./.	0/1:0,60:31:60:1.00:2	./.
chr11	591430	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:33:114:0.035:2	./.
chr11	607175	rs936468	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,12:32:15:0.800:2	./.	./.	./.	0/1:4,5:31:9:0.556:2	0/1:0,21:29:21:1.00:2	./.	./.	./.	0/1:0,14:31:14:1.00:2	./.
chr11	608593	rs149443419	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,15:33:31:0.484:2
chr11	609068	rs7928902	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,8:31:14:0.571:2	0/1:2,5:30:7:0.714:2	./.	./.	0/1:6,5:28:11:0.455:2	0/1:0,12:31:13:1.00:2	./.	./.	./.	0/1:0,5:27:5:1.00:2	./.
chr11	609353	rs11539530	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,10:31:30:0.333:2	0/1:7,12:32:19:0.632:2	./.	./.	0/1:29,23:31:52:0.442:2	0/1:1,37:32:38:0.974:2	./.	./.	./.	0/1:0,41:31:41:1.00:2	./.
chr11	609577	rs7123948	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,27:31:56:0.482:2	./.	./.	./.
chr11	610277	rs11246212	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:28:55:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,14:30:14:1.00:2	0/1:80,76:29:156:0.487:2	0/1:2,86:29:88:0.977:2	0/1:0,88:30:88:1.00:2	0/1:0,73:28:73:1.00:2	0/1:1,117:29:118:0.992:2	0/1:77,62:30:139:0.446:2	0/1:0,105:28:105:1.00:2	0/1:1,93:28:94:0.989:2
chr11	613035	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:33:67:0.060:2	./.	./.
chr11	613208	rs1131665	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:29,4:24:33:0.121:2	0/1:14,6:28:20:0.300:2	./.	./.	0/1:33,9:29:42:0.214:2	0/1:0,28:29:28:1.00:2	./.	0/1:37,9:28:46:0.196:2	./.	0/1:0,28:28:28:1.00:2	./.
chr11	613297	rs1061505	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	0/1:0,3:33:3:1.00:2	./.
chr11	614318	rs1061502	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,12:27:26:0.462:2	0/1:8,12:29:20:0.600:2	./.	./.	0/1:20,25:28:45:0.556:2	0/1:0,36:28:36:1.00:2	./.	0/1:27,16:27:43:0.372:2	./.	0/1:0,31:27:31:1.00:2	./.
chr11	614367	rs11246214	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,10:30:23:0.435:2	./.	./.	./.
chr11	614864	rs1061501	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,15:31:15:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,2:32:2:1.00:2	0/1:5,7:32:12:0.583:2	0/1:0,10:32:10:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,22:31:22:1.00:2	0/1:6,6:33:12:0.500:2	0/1:0,7:30:7:1.00:2	0/1:0,12:31:12:1.00:2
chr11	617378	rs61877856	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,5:25:16:0.313:2	./.	./.	./.	0/1:17,5:27:23:0.227:2	0/1:0,25:28:25:1.00:2	./.	0/1:17,16:27:33:0.485:2	./.	0/1:0,10:30:10:1.00:2	./.
chr11	617420	rs61877857	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:29:10:0.300:2	./.	./.	./.	./.	0/1:1,12:29:13:0.923:2	./.	0/1:4,6:29:10:0.600:2	./.	0/1:0,2:30:2:1.00:2	./.
chr11	617519	rs34889521	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,5:30:18:0.278:2	./.	./.	./.	0/1:29,6:29:35:0.171:2	0/1:1,11:29:12:0.917:2	./.	0/1:16,8:28:24:0.333:2	./.	0/1:0,14:27:14:1.00:2	./.
chr11	617537	rs2740380	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,8:26:10:0.800:2	0/1:0,3:31:3:1.00:2	0/1:0,2:30:2:1.00:2	0/1:12,11:29:23:0.478:2	0/1:5,26:31:31:0.839:2	./.	0/1:1,15:30:16:0.938:2	0/1:9,15:29:24:0.625:2	0/1:7,19:32:26:0.731:2	./.	0/1:9,8:29:17:0.471:2
chr11	617967	rs2740379	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:33:29:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,99:33:99:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,63:34:63:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,37:33:37:1.00:2
chr11	618013	rs7108757	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,20:28:34:0.588:2	0/1:12,9:27:21:0.429:2	./.	./.	0/1:38,23:29:61:0.377:2	0/1:0,64:29:64:1.00:2	./.	./.	./.	0/1:0,21:31:22:1.00:2	./.
chr11	618647	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,7:31:166:0.042:2	./.	./.
chr11	618683	rs200124815	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:158,9:20:169:0.054:2	./.	./.	0/1:163,8:28:171:0.047:2	0/1:162,9:27:171:0.053:2	./.	./.	./.	0/1:140,18:24:158:0.114:2	0/1:179,7:27:186:0.038:2	./.
chr11	618710	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:33:137:0.029:2	./.	./.
chr11	618713	rs139730150	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:142,5:32:148:0.034:2	./.	./.	./.	0/1:149,8:28:157:0.051:2	./.	./.	./.	0/1:129,7:31:136:0.051:2	./.	0/1:137,6:27:143:0.042:2
chr11	618740	rs142627719	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:139,6:28:145:0.041:2	./.	./.	./.	0/1:155,4:32:159:0.025:2	./.	./.	0/1:179,6:26:185:0.032:2	./.	./.	0/1:138,6:28:144:0.042:2
chr11	618776	rs149323039	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,7:26:156:0.045:2	./.	./.	./.
chr11	618806	rs146283589	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,8:22:75:0.107:2	./.	./.	0/1:143,5:30:148:0.034:2	./.	0/1:144,5:29:149:0.034:2	0/1:152,5:30:157:0.032:2	./.	./.	0/1:118,6:22:124:0.048:2
chr11	618833	rs139058512	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:138,4:31:142:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr11	618860	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:62,6:28:68:0.088:2	./.	0/1:131,7:32:138:0.051:2	./.	./.	./.	./.	./.	./.	./.
chr11	618998	rs2740375	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,19:26:40:0.487:2	0/1:12,21:30:33:0.636:2	0/1:0,2:27:2:1.00:2	0/1:14,20:24:34:0.588:2	0/1:8,12:25:20:0.600:2	./.	0/1:2,26:25:28:0.929:2	0/1:20,19:28:39:0.487:2	0/1:28,15:28:44:0.349:2	./.	0/1:11,15:21:26:0.577:2
chr11	619789	rs2246614	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,3:32:5:0.600:2	./.	0/1:0,2:32:2:1.00:2	0/1:2,4:32:6:0.667:2	./.	./.	0/1:0,8:32:8:1.00:2	./.	0/1:2,3:28:5:0.600:2	./.	0/1:0,4:32:4:1.00:2
chr11	621242	rs112269777	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,44:31:107:0.411:2	./.	./.	./.
chr11	621634	rs2740373	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,45:33:111:0.405:2	0/1:25,20:32:45:0.444:2	./.	./.	./.	0/1:5,162:32:167:0.970:2	./.	0/1:97,80:32:177:0.452:2	./.	0/1:74,46:33:120:0.383:2	./.
chr11	653968	rs10615	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:31,17:33:49:0.354:2	0/1:19,11:32:30:0.367:2	./.	0/1:44,40:33:84:0.476:2	./.	0/1:0,66:33:66:1.00:2	./.	./.	./.	0/1:24,14:32:39:0.368:2	./.
chr11	654043	rs10902188	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,36:29:83:0.434:2	./.	./.	./.	0/1:23,13:32:36:0.361:2	./.	./.
chr11	674638	rs35303725	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,68:31:129:0.527:2
chr11	680973	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:189,4:33:194:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr11	695842	rs7928305	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.
chr11	709401	rs10902202	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:18,9:33:27:0.333:2	0/1:10,7:32:17:0.412:2	0/1:4,3:33:7:0.429:2	./.	0/1:10,12:30:22:0.545:2	0/1:21,9:33:30:0.300:2	./.	./.	0/1:14,10:33:24:0.417:2	./.	./.
chr11	720197	rs3087546	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,15:30:22:0.682:2	0/1:0,167:31:167:1.00:2	0/1:88,68:30:156:0.436:2	./.	0/1:1,159:31:160:0.994:2	0/1:92,77:31:169:0.456:2	0/1:0,126:31:126:1.00:2	0/1:52,63:30:115:0.548:2	./.
chr11	721570	rs7635	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,13:30:40:0.325:2	./.	./.	0/1:1,44:30:45:0.978:2	0/1:30,25:31:55:0.455:2	0/1:24,17:30:41:0.415:2	./.
chr11	721931	rs7949926	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,18:32:34:0.529:2	0/1:9,7:33:16:0.438:2	./.	./.	./.	0/1:27,43:31:70:0.614:2	./.	./.	./.	./.	./.
chr11	722709	rs10902205	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,17:31:39:0.436:2	0/1:17,12:31:29:0.414:2	./.	./.	./.	0/1:28,26:30:54:0.481:2	./.	./.	./.	./.	./.
chr11	726178	rs28498399	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:32:29:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,4:28:4:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,20:31:20:1.00:2
chr11	771034	rs7930569	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	0/1:54,23:30:77:0.299:2	./.	./.	0/1:0,60:30:60:1.00:2	0/1:27,20:31:47:0.426:2	0/1:24,20:29:44:0.455:2	./.
chr11	772490	rs12224894	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,8:32:16:0.500:2	./.	0/1:44,33:31:77:0.429:2	./.	./.	0/1:1,60:32:61:0.984:2	0/1:25,34:33:59:0.576:2	0/1:13,16:33:29:0.552:2	./.
chr11	775111	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:31:90:0.044:2	./.	./.
chr11	792570	rs145322467	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,8:29:13:0.615:2	./.	./.	./.	0/1:4,6:31:10:0.600:2	./.
chr11	792955	rs141975755	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,67:32:171:0.392:2	./.	./.	./.	./.
chr11	793588	rs80335370	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,12:33:39:0.308:2	./.	0/1:17,25:32:42:0.595:2	./.	./.	0/1:23,20:33:43:0.465:2	0/1:22,20:31:42:0.476:2	0/1:11,22:33:33:0.667:2
chr11	799340	rs144262676	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,35:32:51:0.686:2	./.	./.	./.
chr11	799982	rs149669006	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,8:28:28:0.286:2	./.	./.	./.	./.
chr11	800630	rs147896191	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,3:26:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	801092	rs11539604	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:28,17:31:45:0.378:2	0/1:30,12:31:42:0.286:2	./.	./.	0/1:50,43:31:93:0.462:2	./.	./.	./.	./.	./.	./.
chr11	802379	rs10902221	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:30:9:0.556:2	./.	0/1:23,17:31:40:0.425:2	./.	0/1:27,19:31:46:0.413:2	0/1:2,41:29:43:0.953:2	0/1:15,10:28:25:0.400:2	0/1:26,11:31:37:0.297:2	./.
chr11	803441	rs142408616	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,57:32:126:0.452:2	./.	./.	./.	./.
chr11	804212	rs7104785	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:31:10:0.400:2	./.	0/1:37,49:30:86:0.570:2	./.	0/1:39,37:31:76:0.487:2	0/1:0,101:31:101:1.00:2	0/1:35,44:32:79:0.557:2	0/1:23,31:31:54:0.574:2	./.
chr11	823809	rs1135628	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,12:31:27:0.444:2	0/1:21,13:30:35:0.382:2	./.	0/1:17,11:28:28:0.393:2	./.	./.	./.	./.
chr11	828916	rs7126805	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:32:19:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,4:32:4:1.00:2	0/1:30,18:32:48:0.375:2	0/1:34,30:32:64:0.469:2	0/1:1,50:32:51:0.980:2	./.	0/1:0,29:32:29:1.00:2	0/1:24,12:32:36:0.333:2	0/1:21,11:32:32:0.344:2	./.
chr11	829539	rs28558789	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,36:30:37:0.973:2	0/1:0,23:30:23:1.00:2	0/1:0,4:30:4:1.00:2	0/1:24,24:31:48:0.500:2	0/1:32,10:31:42:0.238:2	0/1:0,32:29:32:1.00:2	./.	0/1:1,30:29:31:0.968:2	0/1:27,14:31:41:0.341:2	0/1:15,13:32:28:0.464:2	./.
chr11	830670	rs4075289	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:29:23:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,7:30:7:1.00:2	0/1:6,7:31:13:0.538:2	0/1:9,15:31:24:0.625:2	0/1:0,27:29:27:1.00:2	0/1:13,3:31:16:0.188:2	0/1:0,20:29:20:1.00:2	0/1:10,20:31:30:0.667:2	0/1:1,12:30:13:0.923:2	./.
chr11	837582	rs1130663	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,82:31:84:0.976:2	0/1:0,55:31:55:1.00:2	0/1:0,14:31:14:1.00:2	0/1:80,75:31:156:0.484:2	0/1:2,151:31:153:0.987:2	0/1:0,124:30:124:1.00:2	./.	0/1:1,148:30:149:0.993:2	0/1:78,66:32:144:0.458:2	0/1:66,57:31:123:0.463:2	./.
chr11	838033	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:32:188:0.021:2	./.	./.	./.	./.	./.
chr11	840477	rs4895	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:29:16:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,4:29:4:1.00:2	0/1:11,8:29:19:0.421:2	0/1:0,23:30:23:1.00:2	0/1:2,33:30:35:0.943:2	./.	0/1:1,20:29:21:0.952:2	0/1:15,10:32:25:0.400:2	0/1:9,7:27:16:0.438:2	./.
chr11	862652	rs28505621	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:33:92:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,14:34:14:1.00:2	0/1:0,159:32:159:1.00:2	0/1:0,192:32:192:1.00:2	0/1:0,181:32:181:1.00:2	0/1:0,156:32:156:1.00:2	0/1:1,194:32:195:0.995:2	0/1:0,127:33:127:1.00:2	0/1:0,114:32:114:1.00:2	0/1:0,100:31:100:1.00:2
chr11	864445	rs61867552	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,57:33:126:0.452:2	./.	./.	./.	./.
chr11	865527	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:113,4:33:117:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr11	870095	rs113580509	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	./.	./.	./.	./.	0/1:19,20:32:39:0.513:2	./.
chr11	870446	rs6682	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,29:31:83:0.349:2	./.	./.	0/1:49,37:29:87:0.430:2	./.	0/1:0,59:31:59:1.00:2	0/1:39,21:31:60:0.350:2	0/1:0,70:30:70:1.00:2
chr11	870467	rs1127800	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,34:32:85:0.400:2	./.	./.	0/1:39,20:34:59:0.339:2	./.
chr11	893472	rs113850108	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:31:126:0.032:2	./.
chr11	900929	rs10794339	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:31:7:1.00:2	0/1:29,25:33:54:0.463:2	0/1:41,29:32:70:0.414:2	0/1:29,23:32:53:0.442:2	0/1:30,31:31:62:0.508:2	0/1:21,26:32:47:0.553:2	0/1:0,34:32:34:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,37:31:37:1.00:2
chr11	902208	rs147635775	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,48:31:123:0.390:2	./.	./.	./.	./.	./.	./.	./.
chr11	903070	rs28380110	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:32:20:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,2:34:2:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,15:31:15:1.00:2
chr11	985547	rs10794358	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,68:31:71:0.958:2	0/1:0,36:32:36:1.00:2	0/1:0,7:29:7:1.00:2	0/1:67,59:30:126:0.468:2	0/1:1,193:30:194:0.995:2	0/1:0,114:30:114:1.00:2	0/1:1,181:31:182:0.995:2	0/1:3,178:31:181:0.983:2	./.	0/1:0,100:31:100:1.00:2	0/1:48,46:30:94:0.489:2
chr11	1013987	rs10902268	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,9:31:20:0.450:2	./.	0/1:39,49:30:88:0.557:2	0/1:33,37:32:70:0.529:2	./.	./.	./.	0/1:19,29:31:48:0.604:2	./.
chr11	1016238	rs144680251	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:121,4:34:125:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr11	1016609	rs73403291	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,7:31:129:0.054:2
chr11	1016614	rs148793744	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:95,20:31:115:0.174:2	0/1:103,19:32:122:0.156:2	./.	0/1:115,21:31:136:0.154:2	0/1:111,24:30:135:0.178:2	0/1:105,19:30:124:0.153:2	0/1:104,29:30:133:0.218:2	0/1:102,34:30:136:0.250:2	0/1:94,41:31:135:0.304:2	0/1:108,16:29:124:0.129:2	0/1:105,21:32:126:0.167:2
chr11	1016618	rs151061093	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:92,21:30:113:0.186:2	0/1:100,22:32:122:0.180:2	./.	0/1:104,28:32:132:0.212:2	0/1:108,26:31:134:0.194:2	0/1:98,18:31:116:0.155:2	0/1:103,30:31:133:0.226:2	0/1:94,46:31:140:0.329:2	0/1:86,50:33:136:0.368:2	0/1:104,21:31:125:0.168:2	0/1:100,26:31:126:0.206:2
chr11	1016630	rs369775657	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:104,5:27:109:0.046:2	0/1:99,9:30:108:0.083:2	./.	0/1:114,14:28:128:0.109:2	0/1:122,13:28:135:0.096:2	0/1:113,8:28:121:0.066:2	0/1:120,10:26:130:0.077:2	0/1:133,5:28:138:0.036:2	./.	0/1:110,9:28:119:0.076:2	0/1:110,12:29:122:0.098:2
chr11	1016654	rs77560588	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:90,8:30:99:0.082:2	./.	0/1:50,5:32:55:0.091:2	0/1:97,8:32:106:0.076:2	0/1:114,13:30:127:0.102:2	0/1:95,7:28:102:0.069:2	0/1:116,14:31:130:0.108:2	0/1:115,9:29:124:0.073:2	./.	0/1:90,14:30:104:0.135:2	0/1:114,9:31:123:0.073:2
chr11	1016655	rs77024070	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:93,5:28:98:0.051:2	./.	./.	0/1:96,8:30:104:0.077:2	0/1:114,9:31:124:0.073:2	0/1:95,5:31:100:0.050:2	0/1:122,6:31:128:0.047:2	./.	./.	0/1:91,8:31:99:0.081:2	0/1:112,10:29:122:0.082:2
chr11	1016665	rs77438942	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,17:28:95:0.179:2	0/1:79,11:31:90:0.122:2	0/1:45,8:31:53:0.151:2	0/1:87,20:30:107:0.187:2	0/1:94,26:29:120:0.217:2	0/1:89,11:28:100:0.110:2	0/1:109,18:30:127:0.142:2	0/1:120,13:27:133:0.098:2	0/1:105,5:30:110:0.045:2	0/1:85,20:29:105:0.190:2	0/1:97,16:28:113:0.142:2
chr11	1016704	rs75826443	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:91,5:31:96:0.052:2	0/1:57,8:30:65:0.123:2	./.	0/1:96,5:31:102:0.050:2	0/1:95,5:30:100:0.050:2	0/1:123,5:27:129:0.039:2	./.	./.	0/1:100,8:30:108:0.074:2	0/1:108,4:31:112:0.036:2
chr11	1016713	rs76406481	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:85,10:32:95:0.105:2	0/1:88,11:30:99:0.111:2	./.	0/1:98,7:30:106:0.067:2	0/1:91,14:31:105:0.133:2	0/1:94,12:30:106:0.113:2	0/1:117,10:31:128:0.079:2	0/1:131,5:33:136:0.037:2	./.	0/1:100,10:28:110:0.091:2	0/1:111,8:28:119:0.067:2
chr11	1016722	rs144616203	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:94,16:32:110:0.145:2	0/1:101,14:31:115:0.122:2	0/1:62,4:33:66:0.061:2	0/1:108,12:31:120:0.100:2	0/1:103,12:32:115:0.104:2	0/1:114,7:30:121:0.058:2	0/1:116,19:32:135:0.141:2	0/1:134,10:31:144:0.069:2	0/1:125,6:33:131:0.046:2	0/1:102,15:30:117:0.128:2	0/1:108,18:29:126:0.143:2
chr11	1016724	rs3208810	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,21:31:112:0.188:2	0/1:102,20:31:122:0.164:2	0/1:57,9:32:66:0.136:2	0/1:92,29:31:121:0.240:2	0/1:91,24:32:115:0.209:2	0/1:108,18:31:126:0.143:2	0/1:115,21:31:136:0.154:2	0/1:135,9:31:144:0.063:2	0/1:120,12:32:132:0.091:2	0/1:87,29:32:116:0.250:2	0/1:103,24:32:127:0.189:2
chr11	1016732	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:100,5:32:105:0.048:2	./.	./.	./.	0/1:113,5:31:118:0.042:2	./.	0/1:127,4:31:131:0.031:2	./.	./.	./.	0/1:106,4:32:110:0.036:2
chr11	1016733	.	G	T,A	.	PASS	AC=4,1;AF=0.267,0.067;AN=15;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant10-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0/1:33:105:0.049:2	0/1:33:113:0.036:2	0/2:31:83:0.049:2	./.	0/1:31:119:0.043:2	./.	./.	./.	./.	./.	0/1:33:112:0.036:2
chr11	1016742	rs201591120	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,6:32:120:0.050:2
chr11	1016756	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:106,16:33:122:0.131:2	0/1:116,15:31:131:0.115:2	0/1:99,6:30:105:0.057:2	0/1:127,7:32:134:0.052:2	0/1:131,10:33:141:0.071:2	0/1:129,13:32:142:0.092:2	0/1:139,9:31:148:0.061:2	0/1:148,9:32:157:0.057:2	0/1:144,16:34:160:0.100:2	0/1:103,15:32:118:0.127:2	0/1:118,19:32:137:0.139:2
chr11	1016770	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,5:31:124:0.041:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1016776	rs33988517	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:81,49:32:133:0.377:2	0/1:86,43:32:130:0.333:2	0/1:63,59:31:122:0.484:2	./.	0/1:81,57:32:138:0.413:2	0/1:86,49:31:135:0.363:2	./.	./.	./.	0/1:84,43:33:127:0.339:2	./.
chr11	1016795	rs111397691	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:121,4:32:125:0.032:2	0/1:104,18:31:122:0.148:2	0/1:136,6:32:142:0.042:2	0/1:121,12:32:133:0.090:2	0/1:115,13:32:128:0.102:2	0/1:142,5:31:147:0.034:2	0/1:148,5:28:153:0.033:2	0/1:135,12:34:147:0.082:2	0/1:114,12:32:126:0.095:2	0/1:122,11:32:133:0.083:2
chr11	1016818	.	A	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:99,8:32:107:0.075:2	0/1:118,4:31:122:0.033:2	0/1:108,7:32:115:0.061:2	0/1:120,5:33:125:0.040:2	./.	./.	0/1:119,4:32:123:0.033:2	0/1:113,7:32:120:0.058:2	./.	0/1:106,4:29:110:0.036:2	./.
chr11	1016819	rs369828826	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,14:33:105:0.133:2	0/1:95,24:32:119:0.202:2	0/1:103,12:32:115:0.104:2	0/1:98,23:33:121:0.190:2	0/1:92,14:32:106:0.132:2	0/1:101,16:31:118:0.137:2	0/1:100,20:32:120:0.167:2	0/1:95,22:32:117:0.188:2	0/1:104,10:33:114:0.088:2	0/1:93,12:33:105:0.114:2	0/1:102,12:33:114:0.105:2
chr11	1016825	.	G	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:102,8:32:110:0.073:2	0/1:98,18:30:116:0.155:2	0/1:121,7:31:128:0.055:2	0/1:96,11:31:107:0.103:2	0/1:95,17:31:112:0.152:2	0/1:110,7:32:117:0.060:2	./.	0/1:105,7:30:112:0.063:2	0/1:100,9:31:109:0.083:2	0/1:99,10:30:109:0.092:2
chr11	1016834	rs34740154	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:85,19:30:104:0.183:2	0/1:87,21:32:108:0.194:2	0/1:84,20:29:104:0.192:2	0/1:111,19:30:130:0.146:2	0/1:100,11:31:112:0.099:2	0/1:110,11:30:121:0.091:2	0/1:93,18:31:111:0.162:2	0/1:105,12:31:117:0.103:2	0/1:93,22:30:115:0.191:2	0/1:98,16:30:114:0.140:2	0/1:98,19:30:117:0.162:2
chr11	1016835	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:91,6:33:97:0.062:2	./.	0/1:97,6:33:103:0.058:2	./.	./.	./.	./.	0/1:112,4:33:116:0.034:2	./.	0/1:107,4:33:111:0.036:2	./.
chr11	1016842	rs34490696	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:90,7:32:97:0.072:2	./.	0/1:88,10:31:98:0.102:2	0/1:94,6:32:100:0.060:2	./.	0/1:86,4:32:90:0.044:2	./.	./.	0/1:82,4:32:86:0.047:2	./.	0/1:96,5:32:101:0.050:2
chr11	1016854	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,5:33:76:0.066:2	./.	./.	./.	./.	./.	./.	0/1:68,6:32:74:0.081:2	./.
chr11	1016869	rs35469308	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,26:30:70:0.371:2	0/1:39,35:32:75:0.473:2	0/1:35,13:30:48:0.271:2	0/1:46,22:31:68:0.324:2	0/1:48,19:30:68:0.284:2	0/1:37,34:30:71:0.479:2	0/1:34,17:32:51:0.333:2	0/1:50,18:30:68:0.265:2	0/1:42,16:31:59:0.276:2	0/1:32,27:31:59:0.458:2	0/1:49,28:31:77:0.364:2
chr11	1016889	rs373231068	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:67,8:30:75:0.107:2	0/1:37,9:28:46:0.196:2	./.	./.	./.	./.	./.	./.	0/1:65,5:25:70:0.071:2	0/1:68,5:28:73:0.068:2
chr11	1016890	rs113508205	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:77,8:31:85:0.094:2	0/1:59,15:32:74:0.203:2	0/1:24,21:31:45:0.467:2	0/1:71,10:32:81:0.123:2	0/1:66,7:32:73:0.096:2	0/1:70,5:32:75:0.067:2	0/1:60,9:30:69:0.130:2	0/1:70,8:32:78:0.103:2	0/1:59,10:32:69:0.145:2	0/1:61,9:30:70:0.129:2	0/1:55,18:30:73:0.247:2
chr11	1016894	rs34281988	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,23:31:81:0.284:2	0/1:52,16:31:68:0.235:2	0/1:40,3:32:43:0.070:2	0/1:49,24:30:73:0.329:2	0/1:54,15:29:69:0.217:2	0/1:54,16:30:70:0.229:2	0/1:45,23:30:68:0.338:2	0/1:68,9:31:77:0.117:2	0/1:46,15:32:61:0.246:2	0/1:46,21:30:67:0.313:2	0/1:54,14:29:68:0.206:2
chr11	1016910	rs113559934	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:59,10:29:69:0.145:2	0/1:65,4:31:69:0.058:2	./.	0/1:65,16:28:81:0.198:2	0/1:60,13:28:73:0.178:2	./.	0/1:64,10:29:74:0.135:2	0/1:59,6:30:65:0.092:2	0/1:53,6:31:59:0.102:2	0/1:61,9:26:70:0.129:2	0/1:54,7:26:61:0.115:2
chr11	1016914	rs74632841	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,15:31:70:0.214:2	0/1:63,9:32:72:0.125:2	0/1:24,7:32:31:0.226:2	0/1:78,4:31:82:0.049:2	0/1:64,11:30:75:0.147:2	0/1:64,13:30:77:0.169:2	0/1:70,9:30:79:0.114:2	0/1:61,10:30:71:0.141:2	0/1:52,13:31:66:0.200:2	0/1:68,9:31:77:0.117:2	0/1:52,12:31:64:0.188:2
chr11	1016916	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,4:29:74:0.054:2	./.	./.	./.	./.	./.	./.
chr11	1016918	rs34375705	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,12:29:71:0.169:2	0/1:65,9:32:74:0.122:2	0/1:28,3:32:31:0.097:2	0/1:64,17:31:81:0.210:2	0/1:66,6:31:72:0.083:2	0/1:52,11:29:63:0.175:2	0/1:59,13:28:73:0.181:2	0/1:63,6:30:69:0.087:2	./.	0/1:59,5:31:64:0.078:2	0/1:55,8:30:63:0.127:2
chr11	1016919	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:67,7:33:75:0.095:2	0/1:27,5:30:32:0.156:2	0/1:71,5:33:76:0.066:2	0/1:69,7:30:76:0.092:2	0/1:60,4:29:64:0.063:2	0/1:68,11:32:79:0.139:2	0/1:56,11:31:67:0.164:2	0/1:46,5:31:51:0.098:2	0/1:58,7:30:65:0.108:2	0/1:63,4:33:67:0.060:2
chr11	1016928	rs34053383	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,40:33:73:0.556:2	0/1:32,44:32:77:0.579:2	0/1:8,14:32:22:0.636:2	0/1:32,51:33:83:0.614:2	0/1:28,51:31:79:0.646:2	0/1:31,33:33:64:0.516:2	0/1:29,49:32:78:0.628:2	0/1:34,32:32:66:0.485:2	0/1:22,35:33:57:0.614:2	0/1:24,35:32:59:0.593:2	0/1:26,42:31:68:0.618:2
chr11	1016933	rs199579978	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:78,5:33:83:0.060:2	./.	./.	./.	0/1:77,5:29:82:0.061:2	0/1:62,6:28:68:0.088:2	./.	0/1:69,4:31:73:0.055:2	0/1:59,4:33:63:0.063:2	./.	./.
chr11	1016957	rs200695483	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,11:31:90:0.122:2
chr11	1016960	rs113980831	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:75,20:33:95:0.211:2	0/1:76,20:33:96:0.208:2	0/1:20,15:31:35:0.429:2	0/1:95,9:32:104:0.087:2	0/1:65,33:31:98:0.337:2	0/1:72,19:31:91:0.209:2	0/1:76,15:32:91:0.165:2	0/1:66,23:31:89:0.258:2	0/1:69,19:31:88:0.216:2	0/1:72,28:31:100:0.280:2	0/1:76,10:32:86:0.116:2
chr11	1016978	rs76461263	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:100,8:31:108:0.074:2	0/1:90,19:31:109:0.174:2	0/1:33,6:30:39:0.154:2	0/1:100,11:30:111:0.099:2	0/1:103,7:31:110:0.064:2	0/1:103,8:28:111:0.072:2	0/1:99,7:30:106:0.066:2	0/1:101,6:28:107:0.056:2	0/1:79,11:31:92:0.122:2	0/1:100,11:30:112:0.099:2	0/1:89,9:28:99:0.092:2
chr11	1016991	rs74788171	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:108,8:29:116:0.069:2	0/1:102,18:30:120:0.150:2	0/1:37,5:31:42:0.119:2	0/1:107,8:31:115:0.070:2	0/1:100,6:30:106:0.057:2	0/1:99,7:31:107:0.066:2	0/1:107,6:30:113:0.053:2	0/1:94,5:26:99:0.051:2	0/1:81,7:32:88:0.080:2	0/1:105,7:30:112:0.063:2	0/1:93,7:31:100:0.070:2
chr11	1017023	rs78989655	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:106,6:32:112:0.054:2	./.	./.	./.	0/1:124,4:32:128:0.031:2	./.	./.	./.	./.	./.
chr11	1017029	rs35621365	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,58:32:104:0.558:2	0/1:42,61:32:103:0.592:2	0/1:19,38:32:57:0.667:2	0/1:64,63:32:127:0.496:2	0/1:56,63:32:119:0.529:2	0/1:59,61:32:120:0.508:2	0/1:69,59:32:128:0.461:2	0/1:57,56:32:113:0.496:2	0/1:56,57:33:113:0.504:2	0/1:49,63:32:112:0.563:2	0/1:49,53:32:102:0.520:2
chr11	1017069	rs80333708	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:119,18:32:137:0.131:2	0/1:94,27:31:121:0.223:2	0/1:48,22:31:70:0.314:2	0/1:120,19:31:139:0.137:2	0/1:122,5:31:127:0.039:2	0/1:117,14:31:131:0.107:2	0/1:110,18:31:128:0.141:2	0/1:110,22:32:132:0.167:2	0/1:120,10:32:130:0.077:2	0/1:112,18:30:130:0.138:2	0/1:124,12:32:136:0.088:2
chr11	1017084	rs34649796	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:111,30:31:141:0.213:2	0/1:90,34:32:125:0.274:2	0/1:61,14:29:75:0.187:2	0/1:97,36:31:133:0.271:2	0/1:74,44:31:118:0.373:2	0/1:76,31:31:108:0.290:2	0/1:86,30:31:116:0.259:2	0/1:110,18:29:128:0.141:2	0/1:92,31:31:123:0.252:2	0/1:84,33:31:117:0.282:2	0/1:87,35:31:122:0.287:2
chr11	1017085	rs200257435	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,20:33:127:0.157:2
chr11	1017110	rs36130410	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:80,25:30:105:0.238:2	0/1:101,12:31:113:0.106:2	0/1:53,10:31:63:0.159:2	0/1:91,11:26:102:0.108:2	0/1:94,18:27:113:0.161:2	0/1:85,5:29:90:0.056:2	0/1:96,17:25:114:0.150:2	0/1:88,21:29:109:0.193:2	0/1:87,19:28:106:0.179:2	0/1:81,14:29:95:0.147:2	0/1:69,21:29:90:0.233:2
chr11	1017112	rs77753732	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:85,23:29:108:0.213:2	0/1:104,13:29:117:0.111:2	0/1:52,10:31:62:0.161:2	0/1:104,10:28:114:0.088:2	0/1:101,18:28:119:0.151:2	0/1:91,5:29:96:0.052:2	0/1:103,16:26:120:0.134:2	0/1:91,21:28:112:0.188:2	0/1:88,18:30:106:0.170:2	0/1:86,14:30:100:0.140:2	0/1:73,19:30:92:0.207:2
chr11	1017113	rs74202058	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:75,34:28:111:0.312:2	0/1:87,29:29:117:0.250:2	0/1:37,22:26:61:0.373:2	0/1:90,20:27:111:0.182:2	0/1:96,19:26:118:0.165:2	0/1:85,8:25:94:0.086:2	0/1:94,24:27:120:0.203:2	0/1:79,29:27:110:0.269:2	0/1:83,22:29:107:0.210:2	0/1:76,20:28:97:0.208:2	0/1:60,26:27:86:0.302:2
chr11	1017135	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:131,5:27:136:0.037:2	0/1:120,5:32:125:0.040:2	0/1:56,4:28:60:0.067:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1017152	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,4:29:62:0.065:2	./.	./.	0/1:100,4:32:105:0.038:2	./.	./.	./.	./.	0/1:102,5:33:107:0.047:2
chr11	1017154	rs112965257	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,5:32:63:0.079:2	./.	./.	0/1:103,5:32:108:0.046:2	0/1:128,5:33:133:0.038:2	./.	0/1:107,5:34:112:0.045:2	0/1:110,7:30:117:0.060:2	0/1:99,8:29:107:0.075:2
chr11	1017158	rs36143620	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,5:27:60:0.083:2	./.	./.	0/1:100,6:28:107:0.057:2	0/1:121,6:29:127:0.047:2	./.	0/1:107,5:32:113:0.045:2	0/1:108,8:30:116:0.069:2	0/1:102,8:29:110:0.073:2
chr11	1017173	rs61869004	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:84,28:30:113:0.250:2	0/1:89,34:31:123:0.276:2	0/1:50,8:30:58:0.138:2	0/1:78,34:29:112:0.304:2	0/1:101,25:29:126:0.198:2	0/1:69,17:30:86:0.198:2	0/1:88,30:30:120:0.254:2	0/1:89,32:28:121:0.264:2	0/1:66,35:31:101:0.347:2	0/1:83,21:30:104:0.202:2	0/1:63,36:31:100:0.364:2
chr11	1017183	rs34844844	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:98,18:32:116:0.155:2	0/1:97,21:29:118:0.178:2	0/1:44,11:30:55:0.200:2	0/1:77,29:30:106:0.274:2	0/1:109,25:31:134:0.187:2	0/1:74,9:30:83:0.108:2	0/1:113,10:32:123:0.081:2	0/1:110,13:31:123:0.106:2	0/1:88,13:32:101:0.129:2	0/1:80,27:31:107:0.252:2	0/1:81,19:32:100:0.190:2
chr11	1017186	rs74579726	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,6:29:109:0.055:2	./.
chr11	1017220	rs377056834	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,24:29:86:0.279:2	0/1:76,30:29:106:0.283:2	0/1:24,10:28:34:0.294:2	0/1:72,11:25:83:0.133:2	0/1:116,17:26:133:0.128:2	./.	0/1:98,11:28:109:0.101:2	0/1:100,11:29:111:0.099:2	0/1:58,8:27:66:0.121:2	0/1:73,14:28:87:0.161:2	0/1:74,17:25:91:0.187:2
chr11	1017231	rs35840539	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,19:33:82:0.232:2	0/1:83,23:32:106:0.217:2	0/1:23,9:33:32:0.281:2	0/1:66,17:31:83:0.205:2	0/1:109,12:31:121:0.099:2	0/1:87,13:32:100:0.130:2	0/1:87,24:31:111:0.216:2	0/1:101,13:32:114:0.114:2	0/1:51,16:33:67:0.239:2	0/1:78,16:30:94:0.170:2	0/1:65,29:31:94:0.309:2
chr11	1017239	rs56386804	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:84,7:31:91:0.077:2	0/1:103,7:29:110:0.064:2	0/1:26,4:32:30:0.133:2	0/1:75,19:30:94:0.202:2	0/1:114,9:30:123:0.073:2	0/1:82,16:29:98:0.163:2	0/1:94,26:31:120:0.217:2	0/1:92,24:30:116:0.207:2	0/1:52,29:32:81:0.358:2	0/1:80,13:30:93:0.140:2	0/1:72,27:30:99:0.273:2
chr11	1017240	rs62891761	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:67,20:31:87:0.230:2	0/1:87,18:31:105:0.171:2	./.	0/1:79,14:29:93:0.151:2	0/1:120,5:25:125:0.040:2	0/1:91,11:28:102:0.108:2	0/1:99,23:30:122:0.189:2	0/1:95,21:31:116:0.181:2	0/1:63,22:31:85:0.259:2	0/1:85,11:31:96:0.115:2	0/1:77,26:30:103:0.252:2
chr11	1017273	rs200476918	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:104,7:30:111:0.063:2	0/1:106,10:33:116:0.086:2	0/1:45,3:32:48:0.063:2	./.	0/1:98,12:31:110:0.109:2	0/1:99,10:31:109:0.092:2	0/1:116,8:32:124:0.065:2	0/1:105,11:32:116:0.095:2	0/1:110,7:32:117:0.060:2	0/1:92,6:32:98:0.061:2	./.
chr11	1017277	rs111373859	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:103,13:33:116:0.112:2	0/1:106,12:32:118:0.102:2	0/1:47,4:31:51:0.078:2	0/1:107,8:33:115:0.070:2	0/1:93,11:33:104:0.106:2	0/1:103,20:32:123:0.163:2	0/1:108,19:33:127:0.150:2	0/1:110,17:33:127:0.134:2	0/1:100,13:34:113:0.115:2	0/1:90,13:31:103:0.126:2	./.
chr11	1017302	rs35330958	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:103,9:30:112:0.080:2	0/1:55,7:29:62:0.113:2	0/1:91,4:31:95:0.042:2	./.	./.	0/1:115,4:31:119:0.034:2	./.	./.	./.	./.
chr11	1017307	rs372717767	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:85,11:32:96:0.115:2	0/1:100,10:27:111:0.091:2	0/1:57,9:30:66:0.136:2	0/1:93,4:31:97:0.041:2	0/1:101,4:30:105:0.038:2	0/1:98,9:31:107:0.084:2	0/1:115,6:32:121:0.050:2	0/1:93,9:32:102:0.088:2	0/1:101,9:31:110:0.082:2	0/1:87,11:26:98:0.112:2	./.
chr11	1017317	rs33943903	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:93,11:28:104:0.106:2	0/1:105,7:29:112:0.063:2	0/1:56,8:29:64:0.125:2	0/1:78,17:31:95:0.179:2	0/1:101,15:30:116:0.129:2	0/1:76,18:30:94:0.191:2	0/1:106,8:28:115:0.070:2	0/1:120,9:31:129:0.070:2	0/1:102,13:29:115:0.113:2	0/1:97,8:28:105:0.076:2	0/1:86,6:24:92:0.065:2
chr11	1017325	rs55903826	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:92,20:30:112:0.179:2	0/1:79,31:29:110:0.282:2	0/1:48,18:29:66:0.273:2	0/1:85,12:29:97:0.124:2	0/1:99,15:31:114:0.132:2	0/1:92,27:28:119:0.227:2	0/1:89,34:30:123:0.276:2	0/1:91,29:31:120:0.242:2	0/1:92,28:31:120:0.233:2	0/1:86,17:29:103:0.165:2	0/1:56,34:30:90:0.378:2
chr11	1017337	rs76686156	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,16:32:98:0.163:2	0/1:102,9:32:111:0.081:2	0/1:60,5:34:65:0.077:2	0/1:92,16:31:108:0.148:2	0/1:84,26:31:110:0.236:2	0/1:94,14:32:108:0.130:2	0/1:109,12:32:121:0.099:2	0/1:111,12:30:123:0.098:2	0/1:105,18:32:125:0.146:2	0/1:79,22:33:101:0.218:2	0/1:83,12:28:95:0.126:2
chr11	1017338	rs78943453	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,13:30:96:0.135:2	0/1:104,9:28:113:0.080:2	0/1:60,5:31:65:0.077:2	0/1:93,16:30:109:0.147:2	0/1:85,26:30:111:0.234:2	0/1:94,14:31:108:0.130:2	0/1:112,11:31:123:0.089:2	0/1:111,12:29:123:0.098:2	0/1:108,18:31:126:0.143:2	0/1:78,22:32:101:0.220:2	0/1:83,12:25:95:0.126:2
chr11	1017381	rs34912894	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:97,7:29:104:0.067:2	0/1:94,12:32:106:0.113:2	0/1:53,6:31:59:0.102:2	0/1:108,7:33:115:0.061:2	0/1:117,13:32:130:0.100:2	0/1:105,8:30:113:0.071:2	0/1:106,11:32:117:0.094:2	0/1:120,9:32:129:0.070:2	./.	0/1:105,11:30:116:0.095:2	0/1:99,9:30:108:0.083:2
chr11	1017384	rs34095361	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,13:31:104:0.125:2	0/1:89,22:31:111:0.198:2	0/1:47,12:32:59:0.203:2	0/1:98,21:32:119:0.176:2	0/1:105,25:31:130:0.192:2	0/1:94,20:31:114:0.175:2	0/1:98,23:32:121:0.190:2	0/1:108,22:31:130:0.169:2	0/1:106,10:28:116:0.086:2	0/1:95,24:30:119:0.202:2	0/1:88,20:29:108:0.185:2
chr11	1017386	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant8-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:105,8:32:113:0.071:2	0/1:57,5:31:62:0.081:2	./.	./.	./.	./.	0/1:111,5:29:117:0.043:2	./.	./.	./.
chr11	1017392	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:120,7:26:127:0.055:2	0/1:107,7:28:114:0.061:2	./.	./.	./.	0/1:110,5:29:115:0.043:2	./.
chr11	1017401	.	G	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:111,7:31:118:0.059:2	./.	0/1:95,6:27:101:0.059:2	0/1:121,4:30:125:0.032:2	0/1:98,7:31:105:0.067:2	0/1:111,8:30:119:0.067:2	0/1:109,5:29:114:0.044:2	0/1:102,14:30:116:0.121:2	0/1:106,6:32:112:0.054:2	0/1:82,11:30:93:0.118:2
chr11	1017417	.	G	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:102,8:25:110:0.073:2	0/1:109,9:30:118:0.076:2	./.	0/1:104,7:28:111:0.063:2	0/1:120,8:27:128:0.063:2	0/1:95,9:28:105:0.087:2	0/1:108,12:26:120:0.100:2	0/1:112,8:26:121:0.067:2	0/1:95,13:26:108:0.120:2	0/1:105,8:28:114:0.071:2	0/1:91,11:28:102:0.108:2
chr11	1017421	rs35549382	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:86,21:31:108:0.196:2	0/1:96,21:31:117:0.179:2	0/1:47,13:31:60:0.217:2	0/1:85,26:30:111:0.234:2	0/1:91,37:31:128:0.289:2	0/1:82,26:30:108:0.241:2	0/1:87,35:31:122:0.287:2	0/1:109,15:30:124:0.121:2	0/1:89,18:31:107:0.168:2	0/1:93,28:31:121:0.231:2	0/1:90,16:30:106:0.151:2
chr11	1017426	rs199866370	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:113,7:30:120:0.058:2	./.	./.	./.	./.	./.	./.
chr11	1017440	rs78729877	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:93,5:33:99:0.051:2	0/1:109,6:31:115:0.052:2	0/1:40,4:32:44:0.091:2	./.	0/1:90,11:30:101:0.109:2	0/1:84,8:31:92:0.087:2	0/1:105,6:32:112:0.054:2	./.	./.	0/1:108,6:32:114:0.053:2	./.
chr11	1017443	rs80266715	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,8:32:107:0.077:2	./.	./.	0/1:96,19:30:117:0.165:2	0/1:72,33:32:108:0.314:2	0/1:86,10:32:98:0.104:2	./.	0/1:89,14:32:103:0.136:2
chr11	1017464	rs112874139	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:96,5:31:101:0.050:2	0/1:112,6:31:118:0.051:2	0/1:31,4:30:35:0.114:2	./.	0/1:83,8:28:91:0.088:2	0/1:92,5:24:97:0.052:2	./.	./.	./.	0/1:107,11:31:118:0.093:2	./.
chr11	1017467	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,5:31:89:0.056:2	./.	./.	./.	./.	./.	./.
chr11	1017483	rs79986665	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:90,4:32:94:0.043:2	0/1:100,10:32:110:0.091:2	./.	0/1:92,7:26:99:0.071:2	0/1:79,10:31:89:0.112:2	0/1:80,11:32:91:0.121:2	0/1:90,7:33:97:0.072:2	0/1:99,11:31:110:0.100:2	0/1:80,4:29:84:0.048:2	0/1:107,5:30:112:0.045:2	0/1:88,8:30:96:0.083:2
chr11	1017485	rs112510411	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,8:26:84:0.096:2	0/1:85,6:23:91:0.066:2	./.	0/1:101,6:29:107:0.056:2	./.	./.	0/1:98,5:29:103:0.049:2
chr11	1017498	rs76707565	C	G,T	.	PASS	AC=7,1;AF=0.292,0.042;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0/1:28:99:0.104:2	./.	0/1:31:43:0.119:2	0/1:33:105:0.080:2	0/1:33:91:0.078:2	0/2:31:100:0.082:2	./.	0/1:32:106:0.058:2	0/1:32:98:0.041:2	./.	0/1:32:109:0.047:2
chr11	1017514	rs201376676	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,8:31:86:0.093:2	0/1:94,9:32:104:0.087:2	0/1:41,6:30:48:0.128:2	0/1:94,10:33:104:0.096:2	0/1:73,18:32:91:0.198:2	0/1:78,9:31:87:0.103:2	0/1:108,5:32:113:0.044:2	0/1:98,8:31:106:0.075:2	./.	0/1:91,6:32:97:0.062:2	0/1:88,4:33:92:0.043:2
chr11	1017519	rs112553306	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:92,8:30:100:0.080:2	./.	./.	./.	0/1:71,4:32:75:0.053:2	./.	./.	./.	./.	./.
chr11	1017522	rs199592093	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,4:31:47:0.085:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1017552	rs35868469	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,31:30:110:0.282:2	./.	./.	./.	./.	./.	./.	0/1:98,24:28:123:0.197:2
chr11	1017575	rs76222533	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:117,10:31:127:0.079:2	./.	./.	./.	./.	./.	./.
chr11	1017581	rs76886285	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:117,9:32:126:0.071:2	./.	./.	./.	./.	./.	./.
chr11	1017596	rs201522029	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:121,26:31:147:0.177:2	./.	./.	./.	./.	./.	./.	0/1:138,23:32:161:0.143:2
chr11	1017655	rs201234174	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:106,22:30:128:0.172:2	./.	./.	./.	./.	./.	./.	0/1:119,18:30:137:0.131:2
chr11	1017691	rs77359624	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:97,34:33:131:0.260:2	0/1:78,44:32:122:0.361:2	0/1:74,37:33:111:0.333:2	0/1:100,27:33:127:0.213:2	0/1:115,14:32:129:0.109:2	0/1:100,17:31:117:0.145:2	0/1:123,22:31:145:0.152:2	0/1:114,21:33:135:0.156:2	0/1:118,12:32:131:0.092:2	0/1:107,20:33:127:0.157:2	0/1:115,22:33:137:0.161:2
chr11	1017746	rs78848170	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:145,8:32:153:0.052:2	0/1:129,6:33:136:0.044:2	0/1:121,10:32:131:0.076:2	0/1:142,8:33:150:0.053:2	0/1:134,7:31:141:0.050:2	./.	0/1:148,9:33:157:0.057:2	0/1:144,10:31:154:0.065:2	0/1:139,7:34:146:0.048:2	0/1:134,8:32:142:0.056:2	0/1:147,6:31:153:0.039:2
chr11	1017767	rs75637734	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:141,5:29:146:0.034:2	0/1:123,5:30:128:0.039:2	0/1:116,8:25:124:0.065:2	0/1:126,11:30:137:0.080:2	0/1:125,6:29:131:0.046:2	0/1:137,5:30:142:0.035:2	0/1:143,9:31:152:0.059:2	0/1:138,14:30:152:0.092:2	0/1:111,7:31:119:0.059:2	0/1:110,14:28:124:0.113:2	0/1:129,10:29:139:0.072:2
chr11	1017768	rs201538911	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:117,11:30:128:0.086:2	./.	./.	./.	./.	./.	./.
chr11	1017773	rs57384288	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:119,15:31:134:0.112:2	./.	./.	0/1:131,12:31:144:0.084:2	0/1:115,19:30:134:0.142:2	0/1:89,27:32:116:0.233:2	./.	0/1:123,15:30:138:0.109:2
chr11	1017783	rs36101709	A	G,C	.	PASS	AC=3,1;AF=0.250,0.083;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant10	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	./.	0/1:29:143:0.035:2	./.	./.	./.	./.	0/2:28:131:0.086:2	./.	0/1:28:129:0.217:2	0/1:30:128:0.289:2	./.	./.
chr11	1017789	rs78819924	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,34:31:135:0.252:2	0/1:87,35:32:122:0.287:2	0/1:72,23:33:95:0.242:2	0/1:99,22:31:121:0.182:2	0/1:97,33:31:130:0.254:2	0/1:95,29:33:124:0.234:2	0/1:115,17:33:132:0.129:2	0/1:100,19:32:119:0.160:2	0/1:113,9:33:122:0.074:2	0/1:88,26:32:114:0.228:2	0/1:104,22:32:126:0.175:2
chr11	1017833	rs373775476	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,5:27:99:0.051:2
chr11	1017845	rs74610224	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:85,22:31:108:0.206:2	0/1:78,25:31:103:0.243:2	0/1:51,19:31:70:0.271:2	0/1:79,16:30:97:0.168:2	0/1:75,13:32:88:0.148:2	./.	0/1:102,17:33:120:0.143:2	0/1:77,13:30:93:0.144:2	0/1:103,10:32:113:0.088:2	0/1:69,17:31:89:0.198:2	0/1:82,11:29:95:0.118:2
chr11	1017858	rs79583615	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,12:29:103:0.117:2	0/1:79,19:29:98:0.194:2	0/1:57,15:30:72:0.208:2	0/1:87,10:31:97:0.103:2	0/1:68,17:28:85:0.200:2	0/1:81,14:29:95:0.147:2	0/1:102,8:31:110:0.073:2	0/1:97,14:30:111:0.126:2	0/1:122,5:30:127:0.039:2	0/1:85,13:30:98:0.133:2	0/1:91,8:30:99:0.081:2
chr11	1017883	rs79644784	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:76,5:26:82:0.062:2	./.	0/1:65,4:29:72:0.058:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1017893	rs76078620	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:68,13:29:81:0.160:2	0/1:64,9:30:73:0.123:2	0/1:60,7:30:67:0.104:2	0/1:71,12:31:83:0.145:2	0/1:75,5:33:80:0.063:2	0/1:73,7:32:80:0.088:2	0/1:100,10:30:110:0.091:2	0/1:76,11:31:87:0.126:2	./.	0/1:68,4:30:72:0.056:2	0/1:76,6:30:82:0.073:2
chr11	1017901	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,5:30:94:0.053:2	./.	./.	./.	./.
chr11	1017935	rs138784536	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:67,11:33:78:0.141:2	0/1:68,9:31:77:0.117:2	0/1:50,7:33:57:0.123:2	0/1:59,22:33:81:0.272:2	0/1:54,10:33:64:0.156:2	0/1:69,13:33:83:0.159:2	0/1:89,19:33:108:0.176:2	0/1:79,10:31:89:0.112:2	0/1:106,9:35:115:0.078:2	0/1:52,5:33:57:0.088:2	0/1:72,7:33:79:0.089:2
chr11	1017939	.	G	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:69,9:33:78:0.115:2	0/1:71,5:29:76:0.066:2	./.	0/1:72,8:34:80:0.100:2	0/1:63,5:34:68:0.074:2	0/1:81,7:29:88:0.080:2	0/1:89,11:34:100:0.110:2	0/1:73,8:33:81:0.099:2	0/1:100,4:36:105:0.038:2	0/1:48,4:27:52:0.077:2	0/1:70,5:33:75:0.067:2
chr11	1017949	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,8:31:84:0.095:2	./.	0/1:84,6:30:90:0.067:2	0/1:93,4:31:97:0.041:2	./.	./.	./.	./.
chr11	1017955	rs113926343	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:76,5:34:81:0.062:2	./.	./.	0/1:77,4:32:82:0.049:2	0/1:63,4:32:67:0.060:2	0/1:84,4:32:88:0.045:2	./.	0/1:80,5:31:85:0.059:2	./.	./.	./.
chr11	1017963	rs61869008	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,7:27:78:0.090:2	0/1:66,9:26:75:0.120:2	0/1:42,5:31:47:0.106:2	0/1:77,5:31:82:0.061:2	0/1:56,10:31:66:0.152:2	0/1:72,17:30:89:0.191:2	0/1:85,7:31:93:0.076:2	0/1:70,11:31:81:0.136:2	0/1:94,12:30:106:0.113:2	0/1:52,8:29:60:0.133:2	0/1:72,11:27:83:0.133:2
chr11	1017968	rs61869009	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,15:30:81:0.185:2	0/1:62,13:31:75:0.173:2	0/1:40,7:30:47:0.149:2	0/1:75,12:32:87:0.138:2	0/1:55,13:30:68:0.191:2	0/1:65,22:31:87:0.253:2	0/1:86,16:31:102:0.157:2	0/1:64,23:32:87:0.264:2	0/1:87,18:31:105:0.171:2	0/1:52,12:30:64:0.188:2	0/1:68,15:32:84:0.181:2
chr11	1017981	rs61869010	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,19:30:78:0.244:2	0/1:54,18:32:72:0.250:2	0/1:34,12:31:46:0.261:2	0/1:67,16:31:83:0.193:2	0/1:50,31:30:82:0.383:2	0/1:56,36:31:92:0.391:2	0/1:79,21:31:100:0.210:2	0/1:58,34:30:92:0.370:2	0/1:77,21:30:98:0.214:2	0/1:50,20:30:70:0.286:2	0/1:63,23:31:86:0.267:2
chr11	1017988	rs112579249	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:81,6:30:87:0.069:2	0/1:61,5:31:66:0.076:2	./.	0/1:75,7:31:82:0.085:2	0/1:87,4:31:91:0.044:2	./.	0/1:98,9:30:107:0.084:2	0/1:88,8:31:96:0.083:2	./.	./.	0/1:82,4:31:86:0.047:2
chr11	1017989	rs150241605	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,5:32:81:0.062:2	./.	0/1:90,6:32:96:0.063:2	./.	./.	./.	./.	./.
chr11	1018012	rs10751676	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,28:30:86:0.326:2	0/1:42,19:31:61:0.311:2	0/1:24,12:32:36:0.333:2	0/1:61,22:30:83:0.265:2	0/1:86,23:29:109:0.211:2	0/1:75,24:31:99:0.242:2	0/1:56,31:31:87:0.356:2	0/1:77,27:31:104:0.260:2	0/1:65,34:32:99:0.343:2	0/1:57,30:31:87:0.345:2	0/1:60,33:30:93:0.355:2
chr11	1018025	rs10751677	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,24:31:87:0.276:2	0/1:53,15:32:68:0.221:2	0/1:23,10:30:33:0.303:2	0/1:70,16:32:87:0.186:2	0/1:95,12:30:107:0.112:2	0/1:97,15:31:112:0.134:2	0/1:68,23:32:91:0.253:2	0/1:78,15:32:93:0.161:2	0/1:75,22:32:97:0.227:2	0/1:64,24:31:88:0.273:2	0/1:73,24:30:97:0.247:2
chr11	1018031	rs10751678	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,21:32:92:0.228:2	0/1:56,15:32:71:0.211:2	0/1:24,9:31:33:0.273:2	0/1:78,10:31:88:0.114:2	0/1:102,9:31:111:0.081:2	0/1:110,11:31:121:0.091:2	0/1:74,20:32:94:0.213:2	0/1:88,12:30:100:0.120:2	0/1:87,18:32:105:0.171:2	0/1:72,19:32:91:0.209:2	0/1:82,17:32:99:0.172:2
chr11	1018059	rs78336072	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,7:31:119:0.059:2	./.	./.	./.	./.
chr11	1018069	rs10736904	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:32:115:0.035:2	0/1:81,5:33:86:0.058:2	./.	./.	./.	./.	./.	./.	./.	0/1:105,5:33:110:0.045:2	./.
chr11	1018095	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:92,5:32:97:0.052:2	./.	0/1:110,5:27:115:0.043:2	./.	./.	0/1:126,5:26:131:0.038:2	./.	0/1:125,5:31:130:0.038:2	0/1:113,6:31:120:0.050:2	./.
chr11	1018116	rs10902269	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:128,7:31:135:0.052:2	0/1:89,14:29:103:0.136:2	0/1:26,3:31:29:0.103:2	0/1:129,5:30:135:0.037:2	0/1:141,6:30:147:0.041:2	0/1:137,11:30:148:0.074:2	0/1:144,9:30:153:0.059:2	0/1:124,7:30:131:0.053:2	0/1:134,13:31:147:0.088:2	0/1:123,13:30:136:0.096:2	0/1:133,11:29:145:0.076:2
chr11	1018138	rs71454075	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:107,7:26:114:0.061:2	./.	./.	./.	0/1:158,10:26:168:0.060:2	./.	./.	0/1:153,9:27:162:0.056:2	0/1:143,9:24:152:0.059:2	0/1:162,5:27:167:0.030:2
chr11	1018144	rs12807084	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:113,6:32:119:0.050:2	./.	./.	./.	0/1:163,9:31:173:0.052:2	./.	./.	0/1:155,6:33:161:0.037:2	0/1:143,7:31:150:0.047:2	0/1:161,5:33:166:0.030:2
chr11	1018262	rs78003962	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:160,7:31:168:0.042:2	./.	0/1:149,4:32:153:0.026:2	./.	./.	./.	./.
chr11	1018263	rs79680044	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:155,5:32:164:0.031:2	./.	./.	./.	./.	./.	./.
chr11	1018295	rs73403297	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:115,11:30:126:0.087:2	0/1:126,8:26:134:0.060:2	./.	0/1:138,7:26:145:0.048:2	0/1:132,18:29:151:0.120:2	0/1:133,10:29:143:0.070:2	0/1:131,12:27:143:0.084:2	0/1:143,9:28:152:0.059:2	0/1:119,11:31:130:0.085:2	0/1:108,13:30:121:0.107:2	0/1:123,8:29:131:0.061:2
chr11	1018300	rs113744996	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,73:32:147:0.497:2	./.	./.	./.
chr11	1018316	rs201954368	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:136,6:25:142:0.042:2	0/1:122,7:23:129:0.054:2	0/1:127,6:27:133:0.045:2	0/1:128,9:25:137:0.066:2	0/1:119,7:27:126:0.056:2	0/1:103,7:29:110:0.064:2	0/1:125,5:27:130:0.038:2
chr11	1018355	rs7396697	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:112,5:31:118:0.043:2	./.	./.	./.	0/1:123,6:29:129:0.047:2	./.	0/1:118,6:33:124:0.048:2	0/1:120,6:32:126:0.048:2	0/1:113,7:28:120:0.058:2	0/1:109,8:28:117:0.068:2	0/1:130,4:31:136:0.030:2
chr11	1018374	rs7396383	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,105:30:108:0.972:2	0/1:1,106:31:107:0.991:2	0/1:0,52:30:52:1.00:2	0/1:1,120:31:121:0.992:2	0/1:1,122:30:123:0.992:2	0/1:0,100:30:100:1.00:2	0/1:3,96:30:99:0.970:2	0/1:0,108:31:108:1.00:2	./.	0/1:0,109:31:109:1.00:2	0/1:1,120:31:121:0.992:2
chr11	1018382	rs76138285	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:133,4:31:137:0.029:2	./.	./.	0/1:119,6:30:125:0.048:2	0/1:117,6:31:123:0.049:2	./.	./.	./.
chr11	1018385	rs7396380	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:118,12:32:130:0.092:2	0/1:109,12:33:121:0.099:2	0/1:52,5:33:57:0.088:2	0/1:120,21:32:141:0.149:2	0/1:127,11:31:138:0.080:2	0/1:109,19:33:128:0.148:2	0/1:104,26:32:130:0.200:2	0/1:110,20:32:130:0.154:2	0/1:108,16:32:124:0.129:2	0/1:117,14:32:131:0.107:2	0/1:123,11:28:134:0.082:2
chr11	1018390	rs111785507	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:124,4:30:129:0.031:2	./.	./.	0/1:132,8:30:142:0.057:2	0/1:138,6:30:147:0.042:2	0/1:124,13:30:138:0.095:2	0/1:131,15:29:147:0.103:2	0/1:134,5:30:139:0.036:2	0/1:121,6:31:128:0.047:2	0/1:133,5:30:138:0.036:2	./.
chr11	1018419	rs148581741	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:121,8:31:129:0.062:2	0/1:112,10:30:122:0.082:2	0/1:64,8:30:72:0.111:2	0/1:138,9:29:147:0.061:2	0/1:150,6:28:156:0.038:2	0/1:131,12:29:143:0.084:2	0/1:138,8:25:146:0.055:2	0/1:129,7:27:136:0.051:2	0/1:127,7:31:134:0.052:2	0/1:128,7:31:135:0.052:2	0/1:127,4:31:132:0.031:2
chr11	1018436	rs12802800	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,42:29:139:0.302:2	0/1:96,32:29:128:0.250:2	./.	./.	./.
chr11	1018456	rs79920422	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:105,16:30:121:0.132:2	0/1:106,16:29:122:0.131:2	0/1:44,13:30:57:0.228:2	0/1:121,21:31:142:0.148:2	0/1:140,21:30:161:0.130:2	0/1:107,38:31:145:0.262:2	0/1:123,30:31:153:0.196:2	0/1:117,14:31:131:0.107:2	0/1:110,24:32:134:0.179:2	0/1:120,13:32:133:0.098:2	0/1:119,18:31:137:0.131:2
chr11	1018459	rs199760270	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,5:27:123:0.041:2	./.	./.	./.	./.	0/1:145,5:30:150:0.033:2	./.	./.	./.	./.	./.
chr11	1018462	rs79350029	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:113,6:32:119:0.050:2	0/1:121,7:32:128:0.055:2	0/1:51,5:31:56:0.089:2	0/1:128,12:32:140:0.086:2	0/1:156,9:32:166:0.055:2	0/1:137,7:31:144:0.049:2	0/1:138,11:32:149:0.074:2	0/1:106,14:30:120:0.117:2	0/1:116,17:32:133:0.128:2	0/1:111,17:32:128:0.133:2	0/1:122,10:32:133:0.076:2
chr11	1018473	rs112923701	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:117,4:32:121:0.033:2	./.	./.	./.	./.	0/1:140,5:31:145:0.034:2	./.	./.	./.	./.	./.
chr11	1018483	rs78265558	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:94,15:31:109:0.138:2	0/1:89,26:32:115:0.226:2	0/1:24,13:34:38:0.351:2	0/1:97,27:33:125:0.218:2	0/1:113,35:33:149:0.236:2	0/1:89,33:33:122:0.270:2	0/1:93,29:33:122:0.238:2	0/1:85,22:33:107:0.206:2	0/1:81,27:34:108:0.250:2	0/1:96,24:33:120:0.200:2	0/1:94,30:33:124:0.242:2
chr11	1018496	rs67341709	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:103,10:30:113:0.088:2	0/1:25,3:31:29:0.107:2	0/1:101,9:31:110:0.082:2	0/1:114,8:32:122:0.066:2	0/1:87,11:31:98:0.112:2	0/1:94,12:32:106:0.113:2	0/1:92,6:31:98:0.061:2	0/1:94,5:31:99:0.051:2	0/1:102,6:32:108:0.056:2	0/1:101,9:31:110:0.082:2
chr11	1018505	rs368974794	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:33:108:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1018523	rs73403301	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:81,4:30:85:0.047:2	./.	./.	./.	0/1:91,4:31:95:0.042:2	./.	./.	./.	./.	./.
chr11	1019375	rs9704308	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,139:31:141:0.993:2	0/1:1,176:31:177:0.994:2	0/1:0,63:30:63:1.00:2	0/1:0,143:31:143:1.00:2	0/1:0,149:31:149:1.00:2	0/1:0,147:30:147:1.00:2	0/1:0,154:31:154:1.00:2	0/1:0,170:31:170:1.00:2	0/1:0,150:31:150:1.00:2	0/1:0,147:31:147:1.00:2	0/1:0,149:31:149:1.00:2
chr11	1019464	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,10:19:146:0.068:2
chr11	1020095	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,6:32:85:0.071:2	./.	./.
chr11	1021268	rs113451874	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,43:34:86:0.500:2	./.	./.
chr11	1026048	rs55965773	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,43:31:86:0.500:2	0/1:29,28:32:57:0.491:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1026084	rs12801568	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,83:29:129:0.643:2	0/1:54,64:28:118:0.542:2	./.	./.	./.
chr11	1027174	rs79139625	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,21:29:32:0.656:2	./.	./.	./.	./.	./.	./.
chr11	1027811	rs7481521	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:31:36:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,3:32:3:1.00:2	0/1:13,13:32:26:0.500:2	0/1:0,33:31:33:1.00:2	0/1:1,30:31:31:0.968:2	0/1:11,11:29:22:0.500:2	0/1:7,10:31:17:0.588:2	./.	0/1:0,21:31:21:1.00:2	0/1:10,7:33:17:0.412:2
chr11	1029135	rs59763899	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,9:30:14:0.643:2	./.	./.
chr11	1029277	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1029320	rs11604757	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,10:33:15:0.667:2	0/1:2,7:29:9:0.778:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,12:32:22:0.545:2
chr11	1030228	rs200980330	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,8:27:59:0.136:2	0/1:29,6:31:35:0.171:2
chr11	1075747	rs2856111	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,39:32:82:0.476:2	./.
chr11	1075850	rs11825969	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,27:30:43:0.628:2
chr11	1075920	rs11825977	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,21:31:35:0.600:2
chr11	1078536	rs61732147	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:31:7:0.714:2	./.	./.	./.	./.	./.	./.	./.
chr11	1079680	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:148,4:33:152:0.026:2	./.	./.	./.	./.	./.	./.
chr11	1080391	rs41521547	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,42:31:70:0.600:2	./.	./.	./.	./.	0/1:19,21:32:40:0.525:2	./.
chr11	1080576	rs41349846	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:104,80:31:184:0.435:2	./.	./.	./.	./.	0/1:60,53:31:113:0.469:2	./.
chr11	1080954	rs11245929	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,53:32:128:0.414:2	./.	./.	./.	./.	0/1:34,28:33:62:0.452:2	./.
chr11	1081074	rs41411848	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,33:29:33:1.00:2	./.	./.	./.	./.	0/1:0,26:29:26:1.00:2	./.
chr11	1081112	rs41345745	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,42:33:43:0.977:2	./.	./.	./.	./.	0/1:0,28:32:28:1.00:2	./.
chr11	1081141	rs41375149	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,12:30:37:0.324:2	./.	./.	./.	./.	0/1:16,13:30:29:0.448:2	./.
chr11	1081151	rs41464048	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,29:27:31:0.935:2	./.	./.	./.	./.	0/1:0,23:24:23:1.00:2	./.
chr11	1081466	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:33:180:0.022:2	./.	./.
chr11	1081757	rs57737240	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,9:31:26:0.346:2	./.	0/1:1,146:31:147:0.993:2	./.	./.	./.	./.	0/1:0,79:32:79:1.00:2	./.
chr11	1082587	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:31:133:0.030:2	./.	./.	./.	./.
chr11	1082605	rs41480348	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:31:7:1.00:2	0/1:62,46:31:108:0.426:2	./.	./.	./.	./.	./.	./.	./.
chr11	1083293	rs7394853	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:30:9:0.556:2	./.	0/1:0,48:27:48:1.00:2	./.	./.	./.	./.	0/1:0,24:28:24:1.00:2	./.
chr11	1084362	rs11245936	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,13:32:22:0.591:2	./.	0/1:85,73:32:158:0.462:2	./.	./.	./.	./.	0/1:54,71:33:125:0.568:2	./.
chr11	1084821	rs10794288	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,3:30:14:0.214:2	./.	0/1:2,184:30:186:0.989:2	./.	./.	./.	./.	0/1:0,141:30:141:1.00:2	./.
chr11	1087591	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:32:67:0.060:2	./.	./.	./.	./.	./.
chr11	1087972	rs10902088	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:32:7:0.571:2	./.	0/1:4,115:30:119:0.966:2	./.	./.	0/1:69,56:31:125:0.448:2	./.	0/1:0,66:32:66:1.00:2	./.
chr11	1088815	rs7103978	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	0/1:77,31:29:108:0.287:2	./.	./.	0/1:81,55:29:136:0.404:2	./.	0/1:33,38:29:72:0.535:2	./.
chr11	1088835	rs41389046	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,28:31:95:0.295:2	./.	./.	0/1:63,49:30:112:0.438:2	./.	0/1:26,30:31:56:0.536:2	./.
chr11	1090343	rs12221966	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,8:34:22:0.364:2	./.	0/1:76,99:31:175:0.566:2	./.	0/1:184,4:34:188:0.021:2	0/1:99,90:32:189:0.476:2	./.	0/1:74,63:32:137:0.460:2	./.
chr11	1090928	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,7:19:38:0.184:2	./.	./.
chr11	1092113	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.	./.
chr11	1092388	rs111520984	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,86:31:170:0.506:2	./.	./.	0/1:88,81:31:169:0.479:2	./.	0/1:78,57:31:135:0.422:2	./.
chr11	1092459	rs374506032	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,5:25:74:0.068:2	./.	./.	0/1:66,6:28:72:0.083:2	./.	./.
chr11	1092492	rs111844333	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,6:26:48:0.125:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1092506	rs199927035	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:26,6:24:32:0.188:2	0/1:14,5:22:19:0.263:2	./.	./.	0/1:39,5:25:45:0.114:2	./.	./.	0/1:50,6:21:56:0.107:2	./.	./.	0/1:31,6:22:37:0.162:2
chr11	1092516	rs112894065	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,6:21:46:0.133:2	./.	./.	./.	./.	./.	0/1:36,5:24:42:0.122:2
chr11	1092524	rs200755841	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,5:31:52:0.096:2	./.	0/1:33,5:31:38:0.132:2	0/1:25,3:33:28:0.107:2	./.
chr11	1092554	rs199676812	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,11:28:46:0.239:2	0/1:22,8:27:30:0.267:2	0/1:8,3:32:11:0.273:2	0/1:47,11:24:58:0.190:2	0/1:41,13:25:54:0.241:2	0/1:36,10:29:46:0.217:2	0/1:45,10:28:55:0.182:2	0/1:53,9:23:62:0.145:2	0/1:39,6:32:45:0.133:2	0/1:33,8:27:41:0.195:2	0/1:56,9:23:65:0.138:2
chr11	1092557	rs200605255	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,19:27:50:0.380:2	0/1:22,6:27:28:0.214:2	0/1:8,3:30:11:0.273:2	0/1:39,17:21:56:0.304:2	0/1:39,14:25:54:0.264:2	0/1:32,14:28:47:0.304:2	0/1:43,16:31:59:0.271:2	0/1:45,17:22:62:0.274:2	0/1:35,12:29:47:0.255:2	0/1:32,10:27:42:0.238:2	0/1:50,13:27:63:0.206:2
chr11	1092595	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:52,7:29:59:0.119:2	./.	./.	0/1:62,8:24:70:0.114:2	0/1:45,4:27:49:0.082:2	0/1:55,5:25:60:0.083:2	0/1:65,7:26:73:0.097:2	0/1:57,5:30:62:0.081:2	0/1:61,6:26:67:0.090:2	0/1:41,5:27:46:0.109:2	0/1:59,7:26:66:0.106:2
chr11	1092618	rs201608750	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,5:26:97:0.052:2	./.	./.
chr11	1092622	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,14:30:97:0.146:2
chr11	1092624	.	C	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:89,4:29:93:0.043:2	./.	./.	0/1:118,5:26:124:0.041:2	0/1:115,9:25:124:0.073:2	0/1:108,7:24:115:0.061:2	0/1:126,8:29:135:0.060:2	0/1:125,11:29:136:0.081:2	0/1:128,5:28:133:0.038:2	0/1:103,10:30:113:0.088:2	./.
chr11	1092636	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:101,13:27:114:0.114:2	0/1:71,6:25:77:0.078:2	./.	0/1:122,17:26:139:0.122:2	0/1:128,16:23:144:0.111:2	0/1:127,9:29:136:0.066:2	0/1:132,14:26:147:0.096:2	0/1:137,14:28:151:0.093:2	0/1:146,6:31:152:0.039:2	0/1:125,15:25:140:0.107:2	0/1:113,12:26:125:0.096:2
chr11	1092644	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,5:29:137:0.037:2
chr11	1092647	rs201749895	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:123,13:25:136:0.096:2	0/1:82,6:25:88:0.068:2	./.	0/1:133,16:25:150:0.107:2	0/1:128,17:21:145:0.117:2	0/1:131,9:28:140:0.064:2	0/1:127,13:26:141:0.093:2	0/1:137,15:26:152:0.099:2	0/1:149,6:27:155:0.039:2	0/1:126,16:25:142:0.113:2	0/1:127,14:27:141:0.099:2
chr11	1092648	rs186349533	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:115,19:25:136:0.142:2	0/1:71,15:25:87:0.174:2	./.	0/1:135,15:27:150:0.100:2	0/1:124,20:24:145:0.139:2	0/1:121,20:25:142:0.142:2	0/1:117,23:25:142:0.164:2	0/1:133,20:26:153:0.131:2	0/1:132,21:26:154:0.137:2	0/1:114,27:26:142:0.191:2	0/1:121,19:22:141:0.136:2
chr11	1092684	rs201269049	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:120,23:26:143:0.161:2	0/1:94,25:26:120:0.210:2	0/1:25,6:19:32:0.194:2	0/1:115,24:23:141:0.173:2	0/1:124,27:28:152:0.179:2	0/1:105,36:25:143:0.255:2	0/1:128,24:24:152:0.158:2	0/1:128,17:27:146:0.117:2	0/1:116,31:27:147:0.211:2	0/1:105,39:27:144:0.271:2	0/1:112,28:26:141:0.200:2
chr11	1092692	rs199884046	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:131,10:28:141:0.071:2	./.	./.	0/1:139,12:30:151:0.079:2	./.	0/1:118,19:28:137:0.139:2	./.
chr11	1092699	rs191524914	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,34:27:123:0.281:2	0/1:85,27:29:116:0.241:2	0/1:23,10:30:33:0.303:2	0/1:95,30:31:126:0.240:2	0/1:95,30:28:125:0.240:2	0/1:89,28:27:120:0.239:2	0/1:94,41:30:135:0.304:2	0/1:113,37:30:151:0.247:2	0/1:95,29:28:126:0.234:2	0/1:91,33:28:124:0.266:2	0/1:89,22:28:115:0.198:2
chr11	1092715	rs199926071	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,65:29:119:0.546:2	0/1:46,61:30:107:0.570:2	0/1:15,18:29:33:0.545:2	0/1:57,48:29:106:0.457:2	0/1:84,47:29:132:0.359:2	0/1:51,58:28:110:0.532:2	0/1:75,61:29:137:0.449:2	0/1:82,48:30:132:0.369:2	0/1:55,66:29:122:0.545:2	0/1:69,52:29:121:0.430:2	0/1:52,50:29:102:0.490:2
chr11	1092726	rs147478427	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,28:29:109:0.257:2	0/1:70,24:26:94:0.255:2	0/1:20,8:23:28:0.286:2	0/1:83,25:22:108:0.231:2	0/1:89,29:20:119:0.246:2	0/1:69,34:25:103:0.330:2	0/1:113,24:23:137:0.175:2	0/1:96,27:22:123:0.220:2	0/1:84,27:22:111:0.243:2	0/1:68,35:22:103:0.340:2	0/1:61,26:22:87:0.299:2
chr11	1092731	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,6:30:114:0.053:2	0/1:98,9:26:107:0.084:2	./.	./.	./.	./.	./.	./.	0/1:114,5:33:119:0.042:2	./.	./.
chr11	1092760	rs77094665	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,55:29:105:0.524:2	0/1:44,40:30:84:0.476:2	0/1:15,12:31:27:0.444:2	0/1:53,53:30:106:0.500:2	0/1:71,55:29:126:0.437:2	0/1:55,35:30:90:0.389:2	0/1:71,57:31:128:0.445:2	0/1:63,58:30:122:0.479:2	0/1:62,52:29:114:0.456:2	0/1:52,55:27:107:0.514:2	0/1:52,39:26:91:0.429:2
chr11	1092813	rs12577898	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:7,3:33:10:0.300:2	./.	0/1:4,3:32:7:0.429:2	./.	0/1:9,3:31:12:0.250:2	./.	0/1:5,5:31:10:0.500:2	./.	./.	./.
chr11	1092858	rs199652746	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,12:27:26:0.462:2	0/1:9,8:30:17:0.471:2	0/1:0,4:30:4:1.00:2	0/1:16,18:28:34:0.529:2	0/1:20,11:26:31:0.355:2	0/1:23,11:28:34:0.324:2	0/1:14,14:28:28:0.500:2	0/1:17,11:28:28:0.393:2	0/1:12,11:28:23:0.478:2	0/1:9,11:32:20:0.550:2	0/1:17,9:27:26:0.346:2
chr11	1092859	rs12786542	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,4:27:26:0.154:2	./.	./.	./.	./.	./.	./.	./.	0/1:19,3:32:23:0.136:2	0/1:15,4:31:20:0.211:2	0/1:21,4:26:26:0.160:2
chr11	1092860	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,4:29:34:0.118:2	./.	./.	0/1:27,5:25:32:0.156:2	./.	./.	0/1:16,4:33:20:0.200:2	0/1:23,4:31:27:0.148:2
chr11	1092872	rs113722672	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,16:27:33:0.485:2	0/1:16,8:26:24:0.333:2	./.	0/1:29,11:24:40:0.275:2	0/1:19,19:25:39:0.500:2	0/1:24,21:26:45:0.467:2	0/1:25,14:29:39:0.359:2	0/1:26,16:29:42:0.381:2	0/1:18,14:26:32:0.438:2	0/1:16,9:26:25:0.360:2	0/1:15,16:29:31:0.516:2
chr11	1092882	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,4:32:40:0.100:2	./.	./.	./.	./.	./.	./.
chr11	1092884	rs201415503	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:28:44:0.091:2	./.	./.	./.
chr11	1092885	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,4:27:30:0.133:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1092891	.	C	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,6:30:41:0.146:2	0/1:39,5:28:44:0.114:2	0/1:38,9:28:47:0.191:2	0/1:38,5:30:43:0.116:2	0/1:33,4:29:37:0.108:2	./.	0/1:32,4:28:36:0.111:2
chr11	1092909	rs111487794	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,5:27:46:0.109:2	./.	./.	./.	./.
chr11	1092910	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,4:27:50:0.080:2	./.	./.	0/1:40,5:31:45:0.111:2	./.	0/1:31,3:31:35:0.088:2	./.	./.
chr11	1092928	rs376681392	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,4:30:37:0.121:2	./.	0/1:28,8:26:37:0.222:2	0/1:30,4:31:36:0.118:2	0/1:20,4:29:25:0.167:2	./.	0/1:20,7:31:27:0.259:2
chr11	1092941	.	C	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,3:29:19:0.158:2	./.	./.	0/1:29,6:28:35:0.171:2	./.	0/1:27,3:32:30:0.100:2	0/1:29,4:33:33:0.121:2	0/1:17,4:29:21:0.190:2	./.	0/1:21,4:29:25:0.160:2
chr11	1092951	rs187978467	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:28,4:31:32:0.125:2	0/1:11,5:26:16:0.313:2	./.	0/1:36,5:32:41:0.122:2	./.	0/1:31,3:32:34:0.088:2	0/1:20,8:31:28:0.286:2	0/1:21,6:31:27:0.222:2	0/1:17,6:27:23:0.261:2	0/1:30,4:25:35:0.118:2	0/1:19,5:32:24:0.208:2
chr11	1092954	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,3:31:34:0.088:2	./.	./.	./.	./.	./.	./.
chr11	1092978	rs192998922	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,5:29:38:0.132:2	./.	0/1:28,3:31:31:0.097:2	./.	./.	./.	0/1:25,11:28:36:0.306:2	./.
chr11	1092997	rs201261285	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,5:25:32:0.161:2	./.	./.	./.	0/1:27,3:32:30:0.100:2	./.
chr11	1092998	rs199740586	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:16,5:24:22:0.238:2	./.	./.	0/1:22,5:30:27:0.185:2	./.	0/1:25,8:27:33:0.242:2	./.	./.	./.	0/1:26,4:29:30:0.133:2	0/1:10,5:29:15:0.333:2
chr11	1093010	rs200689287	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,3:28:18:0.167:2	./.	./.	./.	./.	./.	./.
chr11	1093020	rs149298749	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:8,10:29:18:0.556:2	0/1:3,7:30:10:0.700:2	0/1:0,2:35:2:1.00:2	0/1:4,19:31:23:0.826:2	0/1:7,9:31:16:0.563:2	0/1:6,21:32:27:0.778:2	0/1:2,15:31:17:0.882:2	0/1:5,13:29:18:0.722:2	0/1:1,11:30:12:0.917:2	0/1:8,14:33:22:0.636:2	0/1:4,10:30:14:0.714:2
chr11	1093047	rs12575208	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,8:31:19:0.444:2	./.	./.	0/1:23,6:21:29:0.207:2	0/1:14,4:30:18:0.222:2	0/1:25,6:25:31:0.194:2	./.	./.	./.	0/1:8,4:26:12:0.333:2	0/1:10,4:29:14:0.286:2
chr11	1093057	rs11245947	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,14:30:17:0.875:2	0/1:3,6:29:9:0.667:2	./.	0/1:3,20:28:24:0.870:2	0/1:3,12:30:17:0.800:2	0/1:1,31:29:33:0.969:2	0/1:0,16:28:16:1.00:2	0/1:4,20:26:24:0.833:2	0/1:1,11:30:12:0.917:2	0/1:2,6:28:8:0.750:2	0/1:1,11:31:12:0.917:2
chr11	1093069	rs201496058	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,3:31:17:0.176:2	./.	./.	./.	0/1:9,3:26:12:0.250:2	./.	./.
chr11	1093088	rs11245948	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,6:30:21:0.286:2	./.	./.	./.	0/1:8,11:30:19:0.579:2	0/1:25,10:27:35:0.286:2	0/1:13,11:30:24:0.458:2	0/1:25,6:24:31:0.194:2	0/1:10,7:29:17:0.412:2	0/1:9,7:32:16:0.438:2	0/1:6,6:30:12:0.500:2
chr11	1093094	.	T	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:15,4:27:20:0.211:2	0/1:7,3:29:10:0.300:2	./.	0/1:20,5:30:25:0.200:2	./.	./.	0/1:18,8:31:26:0.308:2	./.	./.	./.	./.
chr11	1093135	rs56080332	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,4:27:28:0.143:2	./.	./.	./.	./.	./.
chr11	1093158	rs202045556	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:17,5:25:22:0.227:2	0/1:4,4:27:8:0.500:2	./.	0/1:17,5:28:22:0.227:2	./.	0/1:18,4:29:22:0.182:2	0/1:27,4:26:31:0.129:2	./.	0/1:18,4:32:22:0.182:2	./.	./.
chr11	1093167	rs12574966	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:18,5:30:23:0.217:2	0/1:3,4:24:7:0.571:2	./.	0/1:17,5:32:22:0.227:2	./.	0/1:21,4:27:25:0.160:2	0/1:25,6:25:31:0.194:2	0/1:31,4:27:35:0.114:2	0/1:18,4:32:22:0.182:2	./.	./.
chr11	1093219	rs371137719	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,3:29:23:0.130:2	./.	./.	./.	./.
chr11	1093272	rs56230143	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:30:29:0.138:2	0/1:5,6:32:11:0.545:2	./.	./.	./.	./.
chr11	1093273	rs55659850	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,3:31:15:0.200:2	0/1:24,4:25:29:0.143:2	0/1:5,6:28:11:0.545:2	./.	./.	./.	./.
chr11	1093274	rs11245949	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:12,3:30:15:0.200:2	./.	./.	./.	0/1:12,5:27:17:0.294:2	./.	./.	./.	0/1:9,8:29:17:0.471:2	./.	./.
chr11	1093286	rs201333212	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,6:27:27:0.222:2	0/1:17,3:33:20:0.150:2	0/1:27,6:29:33:0.182:2	./.	./.	./.	./.	./.
chr11	1093296	rs56068864	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,3:35:20:0.150:2	./.	./.	0/1:19,9:32:28:0.321:2	0/1:14,4:32:18:0.222:2	0/1:29,7:25:36:0.194:2	0/1:9,5:31:14:0.357:2	0/1:16,5:31:21:0.238:2	./.	0/1:12,4:33:16:0.250:2	0/1:6,4:27:10:0.400:2
chr11	1093298	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,5:29:28:0.179:2	./.	./.	./.	./.	./.	./.	./.
chr11	1093305	rs62637245	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,3:31:17:0.176:2	./.	0/1:10,5:29:15:0.333:2	0/1:19,3:32:22:0.136:2	./.	0/1:12,3:29:16:0.200:2	./.
chr11	1093341	rs55897629	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,3:29:16:0.188:2
chr11	1093342	rs55695633	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,4:24:16:0.267:2
chr11	1093346	rs371050870	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:18,3:29:21:0.143:2	./.	./.	./.	./.	./.	0/1:19,5:28:24:0.208:2	./.	./.	./.	0/1:15,4:30:19:0.211:2
chr11	1093348	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,3:33:25:0.130:2	./.	./.	./.	./.
chr11	1093354	rs56290335	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,9:26:22:0.429:2	./.	./.	0/1:18,7:26:25:0.280:2	0/1:15,8:30:23:0.348:2	0/1:28,19:29:47:0.404:2	0/1:15,12:28:27:0.444:2	0/1:22,13:25:35:0.371:2	0/1:15,5:28:20:0.250:2	0/1:15,8:26:23:0.348:2	0/1:14,6:31:20:0.300:2
chr11	1093364	rs113138128	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,4:33:31:0.129:2	0/1:40,4:27:44:0.091:2	./.	./.	0/1:20,3:29:23:0.130:2
chr11	1093365	rs56021606	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,10:32:53:0.189:2	./.	0/1:34,10:31:44:0.227:2	0/1:20,3:32:23:0.130:2	0/1:23,3:30:26:0.115:2	./.
chr11	1093368	rs111440994	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,5:32:43:0.116:2	0/1:19,3:31:22:0.136:2	./.	./.
chr11	1093392	rs55912427	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,5:27:39:0.128:2	./.	./.	./.	./.
chr11	1093393	rs199525790	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,5:25:27:0.185:2	./.
chr11	1093411	rs55824838	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,3:32:29:0.103:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1093412	rs113330607	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,4:27:29:0.138:2	./.	./.	0/1:20,9:29:29:0.310:2	0/1:24,4:26:28:0.143:2	0/1:35,10:27:45:0.222:2	0/1:33,12:30:45:0.267:2	0/1:31,11:29:42:0.262:2	0/1:22,4:33:27:0.154:2	./.	0/1:18,4:29:22:0.182:2
chr11	1093430	rs199573018	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,4:28:28:0.143:2	./.	./.	0/1:25,5:26:30:0.167:2	0/1:24,11:30:35:0.314:2	0/1:29,13:30:42:0.310:2	0/1:39,11:29:50:0.220:2	0/1:30,12:26:42:0.286:2	./.	0/1:21,7:30:28:0.250:2	0/1:20,7:28:27:0.259:2
chr11	1093452	rs34136803	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,9:30:24:0.375:2	0/1:9,3:31:13:0.250:2	./.	0/1:20,9:29:29:0.310:2	0/1:33,5:30:38:0.132:2	0/1:32,6:25:39:0.158:2	0/1:45,10:28:55:0.182:2	0/1:40,7:28:47:0.149:2	./.	0/1:24,5:25:29:0.172:2	0/1:28,4:31:32:0.125:2
chr11	1093512	rs34493663	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,11:28:29:0.379:2	0/1:14,4:27:18:0.222:2	./.	0/1:42,18:29:60:0.300:2	0/1:65,21:31:86:0.244:2	0/1:55,21:29:76:0.276:2	0/1:67,18:32:85:0.212:2	0/1:53,25:30:78:0.321:2	0/1:28,7:33:35:0.200:2	0/1:43,12:33:55:0.218:2	0/1:40,12:30:52:0.231:2
chr11	1093569	rs72842460	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:40,6:29:46:0.130:2	0/1:20,3:33:23:0.130:2	./.	0/1:62,16:29:78:0.205:2	0/1:83,10:28:93:0.108:2	0/1:78,9:32:87:0.103:2	0/1:88,10:30:98:0.102:2	0/1:78,16:30:94:0.170:2	0/1:64,8:29:72:0.111:2	0/1:55,8:30:63:0.127:2	./.
chr11	1093575	rs201450769	G	C,T	.	PASS	AC=3,2;AF=0.200,0.133;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:BQ:DP:FA:SS	./.	./.	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	./.	0/2:29:82:0.136:2	0/1:25:93:0.075:2	./.	0/2:30:105:0.095:2	0/1:27:94:0.106:2	./.	0/1:26:59:0.085:2	./.
chr11	1093582	rs55641679	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,4:27:46:0.087:2	./.	./.	0/1:70,12:31:82:0.146:2	0/1:87,6:32:93:0.065:2	0/1:77,5:28:82:0.061:2	0/1:88,11:31:99:0.111:2	0/1:81,10:31:91:0.110:2	0/1:70,4:33:74:0.054:2	0/1:49,5:31:54:0.093:2	./.
chr11	1093710	rs7944723	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:27,27:31:54:0.500:2	0/1:22,21:29:43:0.488:2	0/1:4,7:30:11:0.636:2	./.	0/1:0,105:30:105:1.00:2	0/1:59,44:29:103:0.427:2	0/1:62,55:29:117:0.470:2	0/1:0,114:30:116:1.00:2	0/1:60,36:30:96:0.375:2	0/1:1,66:30:67:0.985:2	0/1:42,35:29:77:0.455:2
chr11	1093769	rs41361144	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,38:32:91:0.418:2	./.	0/1:27,24:32:51:0.471:2	./.
chr11	1094690	rs10794291	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:41,24:30:65:0.369:2	0/1:15,14:32:29:0.483:2	./.	./.	0/1:30,26:31:56:0.464:2	0/1:40,30:32:70:0.429:2	./.	0/1:25,25:31:50:0.500:2	0/1:31,15:31:46:0.326:2	0/1:20,10:32:30:0.333:2	./.
chr11	1094753	rs10794292	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:67,44:32:111:0.396:2	0/1:30,38:31:68:0.559:2	0/1:5,4:31:9:0.444:2	./.	0/1:0,140:31:140:1.00:2	0/1:97,60:31:157:0.382:2	./.	0/1:1,115:31:116:0.991:2	0/1:80,54:32:134:0.403:2	0/1:1,78:31:79:0.987:2	./.
chr11	1095681	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:29:60:0.067:2
chr11	1096494	rs6421972	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:37,28:30:65:0.431:2	0/1:19,19:30:38:0.500:2	0/1:8,9:33:17:0.529:2	./.	0/1:0,144:32:144:1.00:2	0/1:59,69:32:128:0.539:2	./.	0/1:0,159:32:159:1.00:2	0/1:70,43:33:113:0.381:2	0/1:0,72:31:72:1.00:2	./.
chr11	1101078	rs11245954	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,53:31:122:0.434:2	./.	./.	0/1:71,54:30:125:0.432:2	./.	0/1:40,51:30:91:0.560:2	./.
chr11	1101649	rs7480563	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:26,22:33:48:0.458:2	0/1:17,9:31:26:0.346:2	./.	./.	0/1:0,71:32:71:1.00:2	./.	0/1:49,31:32:80:0.388:2	0/1:45,40:32:85:0.471:2	0/1:38,22:34:60:0.367:2	0/1:0,45:32:45:1.00:2	0/1:24,17:32:41:0.415:2
chr11	1103296	rs7126405	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,14:29:31:0.452:2	./.	0/1:83,92:30:175:0.526:2	./.	./.	0/1:77,91:30:171:0.542:2	./.	0/1:46,56:30:102:0.549:2	./.
chr11	1103873	rs11245957	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,48:31:87:0.552:2	./.	./.	0/1:41,31:31:72:0.431:2	./.	0/1:30,29:31:59:0.492:2	./.
chr11	1104123	rs12270802	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,41:30:102:0.402:2	./.	./.	0/1:53,51:32:104:0.490:2	./.	0/1:28,22:32:50:0.440:2	./.
chr11	1151695	rs28737416	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,14:28:24:0.583:2	./.	./.	./.	./.	0/1:10,12:28:22:0.545:2	./.
chr11	1156646	rs35783651	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,9:32:18:0.500:2	0/1:59,58:33:117:0.496:2	./.	0/1:84,64:31:148:0.432:2	0/1:81,78:32:159:0.491:2	./.	0/1:40,51:33:91:0.560:2	./.	./.
chr11	1158073	rs28691231	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,46:29:48:0.958:2	0/1:0,34:30:34:1.00:2	0/1:5,7:30:12:0.583:2	0/1:53,42:30:95:0.442:2	0/1:0,83:29:83:1.00:2	0/1:57,58:31:115:0.504:2	0/1:40,36:30:76:0.474:2	0/1:0,104:29:104:1.00:2	0/1:37,29:31:66:0.439:2	0/1:0,64:30:64:1.00:2	0/1:0,34:30:34:1.00:2
chr11	1158092	rs55863018	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,29:31:66:0.439:2	./.
chr11	1161315	rs28403537	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:28:55:1.00:2	0/1:0,31:27:31:1.00:2	0/1:0,11:28:11:1.00:2	0/1:58,43:27:101:0.426:2	0/1:0,85:27:85:1.00:2	0/1:60,52:28:112:0.464:2	0/1:0,70:28:70:1.00:2	0/1:0,78:27:78:1.00:2	0/1:0,86:29:87:1.00:2	0/1:0,49:26:49:1.00:2	0/1:33,29:28:62:0.468:2
chr11	1161841	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:29:90:0.044:2	./.
chr11	1246941	rs2672785	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,45:32:105:0.429:2	0/1:63,50:33:113:0.442:2	./.	./.	0/1:69,53:31:122:0.434:2
chr11	1247458	rs2075853	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,29:32:60:0.483:2	0/1:36,51:31:87:0.586:2	./.	./.	0/1:32,16:31:48:0.333:2
chr11	1248087	rs56293203	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,5:30:8:0.625:2	./.	./.	./.	./.
chr11	1248994	rs56179538	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,15:32:18:0.833:2	./.	./.	./.
chr11	1250488	rs2075859	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,36:30:69:0.522:2	0/1:20,31:31:51:0.608:2	./.	0/1:33,18:32:51:0.353:2	./.	0/1:11,18:31:29:0.621:2
chr11	1252708	rs2735709	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,37:29:82:0.451:2	0/1:43,40:30:83:0.482:2	./.	0/1:40,45:30:85:0.529:2	./.	0/1:32,38:29:70:0.543:2
chr11	1253942	rs908229	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:48,5:27:53:0.094:2	0/1:19,5:30:24:0.208:2	./.	0/1:71,6:28:77:0.078:2	0/1:60,9:29:69:0.130:2	0/1:43,26:27:69:0.377:2	0/1:32,14:27:46:0.304:2	0/1:79,8:27:87:0.092:2	0/1:25,28:29:53:0.528:2	0/1:49,5:29:54:0.093:2	0/1:18,11:30:29:0.379:2
chr11	1253969	rs72846370	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,5:33:46:0.109:2	./.	./.	0/1:36,5:34:41:0.122:2	./.	./.
chr11	1255486	rs190624357	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,66:28:124:0.532:2	./.	./.	./.
chr11	1255773	rs7116614	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,44:30:115:0.383:2	0/1:61,65:31:126:0.516:2	./.	0/1:62,41:32:105:0.398:2	./.	0/1:44,29:32:73:0.397:2
chr11	1258283	rs78669250	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:17,5:32:22:0.227:2	0/1:18,3:31:21:0.143:2	./.	0/1:30,3:33:33:0.091:2	./.	0/1:33,6:32:39:0.154:2	./.	./.	0/1:28,7:31:35:0.200:2	0/1:21,6:32:27:0.222:2	./.
chr11	1258286	rs77996005	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,5:32:22:0.227:2	0/1:16,4:30:20:0.200:2	./.	./.	./.	0/1:32,6:31:38:0.158:2	./.	./.	0/1:24,7:30:31:0.226:2	0/1:21,6:31:27:0.222:2	./.
chr11	1258295	rs79118814	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:15,5:27:20:0.250:2	0/1:15,4:26:19:0.211:2	./.	0/1:28,4:26:32:0.125:2	./.	0/1:31,6:29:37:0.162:2	./.	./.	0/1:21,7:24:28:0.250:2	0/1:20,7:27:27:0.259:2	./.
chr11	1262525	rs55669609	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,16:31:26:0.615:2	./.	./.	./.	0/1:5,11:30:16:0.688:2
chr11	1263452	rs370364390	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:165,4:31:169:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr11	1263687	rs55933911	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:30:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1263839	rs200669107	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:147,6:27:153:0.039:2	0/1:89,6:29:96:0.063:2	./.	0/1:165,6:30:171:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr11	1263863	rs373667069	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:99,4:32:103:0.039:2	./.	0/1:175,5:30:180:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr11	1263889	rs369964583	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,6:25:110:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1263929	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:153,7:27:161:0.044:2	./.	./.	./.	0/1:182,4:33:186:0.022:2	./.	./.	0/1:177,5:34:182:0.027:2	./.	./.	./.
chr11	1263942	rs200978241	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:151,8:29:159:0.050:2	./.	./.	./.	./.	./.	./.	0/1:160,9:30:169:0.053:2	./.	0/1:169,8:28:177:0.045:2	./.
chr11	1263965	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:33:124:0.032:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1263977	rs2943509	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:157,13:30:170:0.076:2	0/1:124,6:26:130:0.046:2	./.	./.	./.	./.	./.	0/1:163,10:29:173:0.058:2	./.	0/1:163,9:29:172:0.052:2	./.
chr11	1263999	rs200240073	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,7:32:129:0.054:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,95:32:170:0.559:2
chr11	1264048	rs189444561	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,7:32:149:0.047:2	0/1:107,6:33:113:0.053:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1264054	rs2943508	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:145,7:30:152:0.046:2	0/1:104,7:33:111:0.063:2	./.	./.	0/1:167,5:27:172:0.029:2	./.	./.	./.	./.	./.	./.
chr11	1264081	rs2943507	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,22:10:165:0.134:2	./.
chr11	1264115	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,5:30:179:0.028:2	./.	./.
chr11	1264160	rs2943506	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:126,17:29:143:0.119:2	0/1:106,8:31:114:0.070:2	./.	0/1:166,11:29:177:0.062:2	0/1:157,7:30:164:0.043:2	0/1:168,17:29:185:0.092:2	./.	0/1:170,9:29:179:0.050:2	0/1:158,17:29:175:0.097:2	0/1:152,8:27:160:0.050:2	0/1:127,9:29:136:0.066:2
chr11	1264183	rs146229325	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:125,10:27:136:0.074:2	./.	./.	0/1:72,82:29:154:0.532:2	0/1:6,148:29:155:0.961:2	./.	./.	./.	0/1:152,8:30:160:0.050:2	0/1:102,50:28:152:0.329:2	./.
chr11	1264187	rs192961952	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,73:32:159:0.459:2	./.	./.
chr11	1264200	rs199592046	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:118,6:29:124:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,10:29:148:0.068:2	./.
chr11	1264266	rs2943504	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:150,6:30:156:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr11	1264293	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,7:30:177:0.040:2	0/1:130,11:30:141:0.078:2	./.	0/1:110,6:33:116:0.052:2	./.	0/1:103,9:31:112:0.080:2
chr11	1264362	rs11605113	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,58:28:179:0.324:2	0/1:138,51:28:190:0.270:2	./.	0/1:115,55:27:170:0.324:2	./.	0/1:90,44:28:135:0.328:2
chr11	1264414	rs201462026	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,32:32:186:0.172:2	./.
chr11	1264418	rs201556927	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.
chr11	1264631	rs56726556	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,31:31:156:0.199:2	0/1:105,22:32:127:0.173:2	./.	0/1:108,48:32:156:0.308:2	./.	0/1:93,28:31:121:0.231:2
chr11	1264691	rs2943502	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:112,57:27:169:0.337:2	0/1:50,44:27:94:0.468:2	0/1:19,9:30:28:0.321:2	0/1:87,62:27:149:0.416:2	./.	0/1:1,91:27:92:0.989:2	0/1:1,41:26:42:0.976:2	0/1:92,49:27:141:0.348:2	0/1:0,65:28:65:1.00:2	0/1:78,41:27:119:0.345:2	0/1:1,40:26:41:0.976:2
chr11	1264742	rs137973688	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,15:30:66:0.227:2	0/1:24,15:30:39:0.385:2	./.	0/1:28,10:32:38:0.263:2	./.	0/1:30,12:31:42:0.286:2
chr11	1264823	rs4963031	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,51:32:122:0.418:2	0/1:55,38:32:93:0.409:2	0/1:12,8:33:20:0.400:2	0/1:97,88:33:185:0.476:2	./.	0/1:0,146:32:146:1.00:2	0/1:2,187:33:189:0.989:2	./.	0/1:1,139:33:140:0.993:2	0/1:98,49:32:147:0.333:2	0/1:2,92:33:95:0.979:2
chr11	1264890	rs12286473	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,77:31:179:0.430:2	0/1:0,181:30:182:1.00:2	./.	./.	./.	./.	0/1:62,88:32:150:0.587:2	./.
chr11	1264965	rs4963051	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,62:32:110:0.564:2	0/1:46,21:32:67:0.313:2	0/1:3,9:31:12:0.750:2	0/1:49,75:31:124:0.605:2	./.	0/1:53,68:31:121:0.562:2	0/1:26,33:31:59:0.559:2	./.	0/1:47,52:32:99:0.525:2	0/1:49,45:32:94:0.479:2	0/1:27,43:32:70:0.614:2
chr11	1265144	rs200113620	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,9:31:97:0.093:2	./.	./.	./.	./.	./.	./.
chr11	1265394	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,14:30:162:0.086:2	0/1:127,7:31:134:0.052:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1265422	rs199749553	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:90,67:31:157:0.427:2	0/1:73,39:31:112:0.348:2	0/1:23,13:29:36:0.361:2	0/1:108,44:29:153:0.289:2	./.	0/1:102,44:29:146:0.301:2	0/1:71,64:30:135:0.474:2	./.	0/1:82,40:31:122:0.328:2	0/1:90,50:30:140:0.357:2	0/1:88,58:30:146:0.397:2
chr11	1265444	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:176,9:31:185:0.049:2	./.	./.	./.	./.	./.	./.
chr11	1265474	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:33:144:0.028:2	./.	0/1:114,4:32:118:0.034:2
chr11	1265553	rs201542663	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,7:32:194:0.036:2	0/1:130,18:32:148:0.122:2	./.	0/1:172,18:33:192:0.095:2	./.	0/1:112,11:32:123:0.089:2
chr11	1265627	rs199752800	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,46:30:195:0.236:2	0/1:159,38:32:197:0.193:2	./.	0/1:146,37:32:183:0.202:2	./.	0/1:138,42:32:180:0.233:2
chr11	1265752	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,7:24:145:0.051:2	./.	0/1:142,5:27:160:0.034:2	./.	./.
chr11	1265786	rs200197337	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,64:29:181:0.354:2	0/1:122,66:30:188:0.351:2	./.	0/1:129,62:31:191:0.325:2	./.	0/1:98,65:30:164:0.399:2
chr11	1265817	rs201828261	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:167,16:31:184:0.087:2	0/1:171,14:28:185:0.076:2	./.	./.	./.	./.	./.	./.
chr11	1265871	rs201159218	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:140,29:32:169:0.172:2	0/1:158,25:31:183:0.137:2	./.	./.	./.	./.	./.	./.
chr11	1265872	rs200110372	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,26:32:163:0.160:2	0/1:161,23:32:185:0.125:2	0/1:157,5:32:162:0.031:2	0/1:143,24:32:167:0.144:2	./.	0/1:123,14:32:137:0.102:2
chr11	1265936	rs2943496	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:141,13:26:154:0.084:2	0/1:154,5:27:159:0.031:2	0/1:151,6:26:157:0.038:2	./.	0/1:76,55:29:131:0.420:2	0/1:144,6:25:150:0.040:2	./.	./.
chr11	1265993	rs201153963	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:33:141:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:32:131:0.031:2
chr11	1265999	rs371763448	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:152,6:32:158:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:31:127:0.031:2	./.
chr11	1266042	rs201747939	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:142,5:33:149:0.034:2	0/1:85,5:30:91:0.056:2	./.	0/1:187,4:32:194:0.021:2	0/1:186,4:32:191:0.021:2	./.	./.	./.	./.	0/1:148,20:30:168:0.119:2	0/1:148,7:24:158:0.045:2
chr11	1266182	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,8:30:188:0.043:2	./.	./.
chr11	1266252	rs377735149	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:34:167:0.024:2
chr11	1266413	rs199856425	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,35:31:134:0.261:2	./.	./.
chr11	1266428	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:136,37:31:173:0.214:2	./.	./.	./.	./.	./.	./.	./.
chr11	1266479	rs202133597	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,9:28:190:0.047:2	0/1:158,22:29:180:0.122:2	./.	0/1:161,12:30:174:0.069:2	./.	0/1:100,7:28:107:0.065:2
chr11	1266599	rs139960671	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,37:31:91:0.407:2	0/1:22,25:32:47:0.532:2	0/1:7,10:29:17:0.588:2	0/1:45,70:31:115:0.609:2	./.	0/1:60,75:31:135:0.556:2	0/1:45,48:32:93:0.516:2	./.	0/1:34,41:31:75:0.547:2	0/1:36,52:32:88:0.591:2	0/1:45,26:32:71:0.366:2
chr11	1266815	rs200874900	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:92,4:31:96:0.042:2	./.	./.	./.	./.	./.	./.
chr11	1267115	rs200554635	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,70:31:148:0.473:2
chr11	1267325	rs55813014	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,76:31:127:0.598:2	0/1:59,59:31:118:0.500:2	./.	0/1:55,32:33:87:0.368:2	./.	0/1:36,49:32:85:0.576:2
chr11	1267475	rs58125533	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:122,10:30:132:0.076:2	0/1:67,4:30:71:0.056:2	./.	0/1:165,6:31:171:0.035:2	./.	0/1:161,4:33:165:0.024:2	./.	./.	0/1:123,9:30:132:0.068:2	0/1:123,5:33:128:0.039:2	./.
chr11	1267502	rs141653894	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,73:29:172:0.424:2	./.	./.	./.	0/1:53,37:30:90:0.411:2
chr11	1267558	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:147,5:28:152:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr11	1267562	rs60268710	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,74:31:158:0.471:2	0/1:60,54:31:114:0.474:2	./.	0/1:58,48:32:107:0.453:2	./.	0/1:52,30:31:82:0.366:2
chr11	1267611	rs202123454	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:90,5:32:95:0.053:2	0/1:63,5:31:68:0.074:2	./.	0/1:151,7:31:158:0.044:2	0/1:125,4:30:129:0.031:2	./.	./.	./.	./.	0/1:89,8:30:97:0.082:2	./.
chr11	1267635	rs369652005	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,6:29:122:0.049:2	./.	./.	./.
chr11	1267642	rs181987147	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,48:32:118:0.407:2	./.	./.	./.
chr11	1267670	rs117757264	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:61,4:33:65:0.062:2	./.	./.	./.	0/1:148,4:31:152:0.026:2	./.	0/1:141,5:32:146:0.034:2	./.	0/1:46,49:32:95:0.516:2	./.
chr11	1267770	rs374646616	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,86:33:176:0.489:2	./.	./.
chr11	1267819	rs202223260	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:32:176:0.023:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1267917	rs3021163	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,51:30:164:0.311:2	0/1:104,43:30:147:0.293:2	./.	0/1:106,51:32:157:0.325:2	./.	0/1:75,32:30:107:0.299:2
chr11	1267960	rs2943531	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:75,84:30:159:0.528:2	0/1:40,36:32:77:0.474:2	0/1:23,11:32:34:0.324:2	0/1:0,126:31:126:1.00:2	0/1:105,26:31:131:0.198:2	0/1:0,147:31:147:1.00:2	0/1:0,148:30:148:1.00:2	0/1:89,89:32:179:0.500:2	0/1:0,138:32:138:1.00:2	0/1:71,71:30:142:0.500:2	0/1:0,98:31:98:1.00:2
chr11	1267971	rs78526728	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,27:30:122:0.221:2	0/1:121,9:30:130:0.069:2	./.	./.	./.	./.	./.	./.
chr11	1267972	rs75101148	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,28:32:121:0.231:2	0/1:120,9:30:129:0.070:2	./.	./.	./.	./.	./.	./.
chr11	1268063	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,5:33:127:0.039:2	./.	0/1:130,4:31:134:0.030:2
chr11	1268064	rs200948102	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,51:29:149:0.342:2	0/1:96,64:27:160:0.400:2	./.	0/1:78,46:29:124:0.371:2	./.	0/1:88,46:29:134:0.343:2
chr11	1268067	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:32:123:0.033:2	./.
chr11	1268133	rs201028355	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,39:29:194:0.201:2	0/1:165,30:27:195:0.154:2	./.	0/1:144,25:28:169:0.148:2	./.	0/1:133,25:27:158:0.158:2
chr11	1268139	rs200621045	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,5:28:164:0.030:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1268185	rs200708304	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,5:26:145:0.034:2	./.	./.	./.	./.	./.	./.	./.	0/1:175,12:33:187:0.064:2	./.
chr11	1268189	rs202028513	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,6:30:186:0.032:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1268304	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,6:25:181:0.033:2	./.	./.	0/1:184,7:29:191:0.037:2	./.	./.
chr11	1268340	rs368194612	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,21:30:179:0.117:2	0/1:178,12:31:190:0.063:2	./.	0/1:165,10:32:175:0.057:2	./.	0/1:165,8:28:173:0.046:2
chr11	1268481	rs186744090	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:56,8:29:64:0.125:2	0/1:16,4:25:20:0.200:2	0/1:104,12:29:116:0.103:2	./.	0/1:133,6:31:139:0.043:2	./.	0/1:81,8:27:89:0.090:2	./.	./.	./.
chr11	1268513	rs2943529	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,81:31:150:0.540:2	0/1:30,21:31:51:0.412:2	./.	0/1:56,50:32:106:0.472:2	./.	0/1:27,29:31:56:0.518:2
chr11	1268608	rs2943527	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:77,53:30:130:0.408:2	0/1:39,20:28:59:0.339:2	0/1:29,7:29:36:0.194:2	0/1:99,76:30:175:0.434:2	./.	0/1:0,162:29:162:1.00:2	0/1:3,139:30:142:0.979:2	./.	0/1:0,97:30:97:1.00:2	0/1:75,43:30:118:0.364:2	0/1:1,87:29:88:0.989:2
chr11	1268682	rs112219279	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,50:32:141:0.355:2	0/1:39,24:31:64:0.381:2	0/1:25,4:34:29:0.138:2	0/1:111,45:31:156:0.288:2	./.	0/1:93,64:31:157:0.408:2	0/1:67,34:32:101:0.337:2	./.	0/1:56,45:33:101:0.446:2	0/1:63,44:33:107:0.411:2	0/1:33,43:31:76:0.566:2
chr11	1268816	rs71469871	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,5:32:29:0.172:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1268931	rs2334757	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,5:31:102:0.049:2	./.	./.	./.	./.	./.
chr11	1269155	rs200085279	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,5:27:178:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1269215	rs79239311	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:117,66:31:183:0.361:2	0/1:11,171:30:182:0.940:2	./.	./.	./.	./.	0/1:122,60:30:182:0.330:2	./.
chr11	1269245	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,7:32:186:0.038:2	./.	./.	./.	./.	./.
chr11	1269324	rs201195475	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,15:32:193:0.078:2	0/1:130,8:33:138:0.058:2	./.	0/1:179,11:33:190:0.058:2	./.	./.
chr11	1269398	rs148995598	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,40:31:192:0.208:2	0/1:156,35:32:191:0.183:2	./.	0/1:152,38:31:191:0.200:2	./.	0/1:123,60:31:183:0.328:2
chr11	1269523	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,13:17:105:0.124:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1269557	rs201948297	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,18:29:184:0.098:2	0/1:176,12:30:188:0.064:2	./.	0/1:161,14:30:175:0.080:2	./.	0/1:157,7:32:164:0.043:2
chr11	1269601	rs190819085	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,80:31:159:0.503:2	0/1:59,36:32:95:0.379:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1269602	rs199586219	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,9:32:191:0.047:2	0/1:168,6:29:174:0.034:2	./.	0/1:154,16:31:170:0.094:2	./.	0/1:168,9:30:177:0.051:2
chr11	1269627	rs4963056	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,61:29:179:0.341:2	0/1:89,66:28:155:0.426:2	./.	0/1:116,71:30:187:0.380:2	./.	0/1:105,56:30:161:0.348:2
chr11	1269672	rs4963057	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,4:33:23:0.174:2	./.	0/1:179,6:25:185:0.032:2	0/1:113,66:31:179:0.369:2	0/1:77,73:31:150:0.487:2	0/1:182,7:32:189:0.037:2	0/1:81,74:33:155:0.477:2	0/1:146,6:29:152:0.039:2	0/1:80,47:32:127:0.370:2
chr11	1269734	rs201840224	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:164,6:33:170:0.035:2	0/1:181,6:25:187:0.032:2	./.	./.	./.	./.	./.
chr11	1269764	rs201915227	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:133,5:30:138:0.036:2	./.	./.	0/1:174,5:32:179:0.028:2	0/1:157,6:31:163:0.037:2	./.	./.	./.	./.	./.	./.
chr11	1269810	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:185,5:30:190:0.026:2	./.	./.	./.	./.	./.	./.
chr11	1269835	rs2943521	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:175,5:29:180:0.028:2	0/1:92,87:30:179:0.486:2	0/1:93,93:31:186:0.500:2	./.	0/1:97,82:32:179:0.458:2	./.	0/1:93,67:31:160:0.419:2
chr11	1269968	rs376022389	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,76:32:193:0.394:2	./.	./.	./.
chr11	1270073	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,6:32:194:0.031:2	./.	./.	./.	./.
chr11	1270184	rs200048522	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,35:30:132:0.265:2	./.	./.
chr11	1270199	rs371793071	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:127,52:30:179:0.291:2	./.	./.	./.	./.	./.	./.	./.
chr11	1270250	rs199641655	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:148,6:28:154:0.039:2	./.	./.	0/1:173,13:29:187:0.070:2	./.	0/1:177,15:30:193:0.078:2	0/1:151,21:27:172:0.122:2	./.	0/1:156,16:28:173:0.093:2	0/1:142,19:29:161:0.118:2	./.
chr11	1270382	rs199736618	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,7:34:76:0.092:2	./.	0/1:78,6:32:84:0.071:2	0/1:27,5:30:32:0.156:2	./.	./.	./.	./.
chr11	1270385	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,7:33:71:0.099:2	./.	./.	./.	./.	./.	./.	./.
chr11	1270586	rs201712842	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,30:29:89:0.337:2	./.	./.	./.	./.	./.	./.
chr11	1270836	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,65:29:165:0.394:2	0/1:70,63:30:133:0.474:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1270864	rs200110733	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:139,9:29:148:0.061:2	0/1:132,6:32:138:0.043:2	0/1:42,5:30:47:0.106:2	0/1:151,7:32:158:0.044:2	./.	0/1:139,7:30:146:0.048:2	0/1:146,6:30:152:0.039:2	./.	0/1:155,11:31:166:0.066:2	0/1:155,7:31:162:0.043:2	0/1:122,13:31:135:0.096:2
chr11	1270892	rs200912848	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:129,4:31:133:0.030:2	./.	0/1:162,4:31:166:0.024:2	./.	./.	0/1:158,4:32:162:0.025:2	0/1:166,5:31:171:0.029:2	./.	./.	./.
chr11	1270893	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant5-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:128,4:31:132:0.030:2	./.	0/1:160,6:29:166:0.036:2	./.	./.	0/1:160,4:32:165:0.024:2	0/1:166,6:28:172:0.035:2	./.	./.	./.
chr11	1271077	rs201326462	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:142,4:34:146:0.027:2	0/1:156,5:31:161:0.031:2	./.	./.	./.	./.	0/1:95,4:31:99:0.040:2
chr11	1271246	rs373415789	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:31:170:0.024:2	./.	./.	./.	./.
chr11	1271247	rs368056070	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,71:30:157:0.455:2	./.	./.	./.
chr11	1271321	rs2943517	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,81:30:148:0.547:2	0/1:85,42:32:127:0.331:2	./.	0/1:62,64:31:127:0.508:2	./.	0/1:65,38:30:103:0.369:2
chr11	1271333	rs201822078	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,7:27:124:0.056:2	./.	./.	./.	./.
chr11	1271429	rs2943516	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,84:31:175:0.483:2	0/1:66,98:32:164:0.598:2	./.	0/1:90,68:32:158:0.430:2	./.	0/1:60,46:32:107:0.434:2
chr11	1271508	rs12418291	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,79:31:181:0.436:2	0/1:83,97:31:180:0.539:2	./.	0/1:116,65:33:182:0.359:2	./.	0/1:71,46:32:117:0.393:2
chr11	1271582	rs200110193	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,7:29:172:0.041:2	./.	./.	./.	./.	0/1:171,6:31:177:0.034:2
chr11	1271741	rs200232123	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,15:30:183:0.082:2	0/1:178,7:28:185:0.038:2	./.	0/1:175,7:32:182:0.038:2	./.	0/1:152,10:28:162:0.062:2
chr11	1271786	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:146,6:32:152:0.039:2	./.	./.	./.	./.	./.	./.	./.	0/1:164,6:33:170:0.035:2	0/1:156,5:33:161:0.031:2	./.
chr11	1271809	rs2334756	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:146,8:34:155:0.052:2	./.	./.	0/1:175,5:31:180:0.028:2	0/1:168,15:32:183:0.082:2	./.	0/1:129,6:32:135:0.044:2	0/1:180,5:32:187:0.027:2	0/1:145,5:33:150:0.033:2	0/1:151,4:32:157:0.026:2	0/1:153,7:32:161:0.044:2
chr11	1271826	rs2943514	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:163,5:31:168:0.030:2	./.	./.	0/1:163,11:32:174:0.063:2	0/1:164,15:31:180:0.084:2	0/1:170,5:31:175:0.029:2	./.	./.	./.	./.	./.
chr11	1271827	rs377689715	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,6:31:143:0.042:2	./.	./.	./.	0/1:131,6:34:137:0.044:2
chr11	1271918	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,6:29:154:0.039:2	./.	./.	./.	./.	./.
chr11	1271919	rs199870039	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,10:27:155:0.065:2	0/1:144,14:23:158:0.089:2	./.	0/1:117,9:25:126:0.071:2	./.	0/1:116,14:27:130:0.108:2
chr11	1272009	.	T	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:180,7:27:187:0.037:2	./.	./.	./.	0/1:150,5:28:156:0.032:2	./.	0/1:147,13:30:160:0.081:2
chr11	1272034	rs188444809	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,7:26:112:0.063:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1272055	rs373476136	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:167,9:32:178:0.051:2	0/1:133,10:31:143:0.070:2	./.	0/1:182,7:32:189:0.037:2	./.	./.	0/1:187,5:32:193:0.026:2	0/1:188,4:32:192:0.021:2	./.	./.	0/1:169,9:29:179:0.051:2
chr11	1272059	rs199704716	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:161,16:29:177:0.090:2	0/1:130,12:31:144:0.085:2	./.	0/1:176,15:28:192:0.079:2	0/1:182,10:30:192:0.052:2	0/1:181,9:30:190:0.047:2	0/1:184,6:31:190:0.032:2	0/1:188,7:30:195:0.036:2	0/1:172,12:31:185:0.065:2	0/1:181,10:29:191:0.052:2	0/1:156,23:30:179:0.128:2
chr11	1272167	rs4963058	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,66:32:175:0.379:2	0/1:72,66:31:138:0.478:2	./.	./.	./.	./.	./.	./.	0/1:113,75:32:188:0.399:2	./.	./.
chr11	1272173	rs185816733	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,69:31:185:0.373:2	./.	./.	./.
chr11	1272226	rs2943512	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:140,14:14:155:0.091:2	./.	./.	./.	./.	0/1:88,79:31:167:0.473:2	0/1:94,77:31:171:0.450:2	./.	0/1:81,79:32:161:0.494:2	./.	0/1:76,74:31:151:0.493:2
chr11	1272339	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:33:143:0.028:2	./.
chr11	1272671	rs200249076	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:176,8:31:184:0.043:2	./.	./.	./.	./.	./.	./.
chr11	1272683	rs201272490	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:177,8:28:185:0.043:2	./.	./.	./.	./.	./.	./.
chr11	1272696	rs182667095	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:169,6:30:175:0.034:2	./.	./.	./.	./.	./.	./.
chr11	1272858	rs4963059	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,35:29:59:0.593:2	0/1:27,14:30:41:0.341:2	./.	0/1:27,22:31:49:0.449:2	./.	0/1:22,14:31:36:0.389:2
chr11	1276006	rs201530874	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:33:162:0.025:2	./.
chr11	1298430	rs5744015	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,16:31:33:0.485:2	0/1:8,6:32:14:0.429:2	./.	./.	./.	./.	./.	./.	0/1:14,11:33:25:0.440:2	./.	./.
chr11	1309956	rs3750920	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,23:33:75:0.307:2	0/1:30,21:32:51:0.412:2	0/1:0,19:33:19:1.00:2	0/1:1,86:32:87:0.989:2	0/1:2,154:32:156:0.987:2	./.	0/1:99,80:33:179:0.447:2	0/1:89,49:32:138:0.355:2	./.	0/1:1,87:33:88:0.989:2	0/1:43,40:33:83:0.482:2
chr11	1480477	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,21:11:115:0.183:2	./.	./.	./.
chr11	1480496	.	A	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:20,8:13:28:0.286:2	./.	./.	./.	0/1:40,20:9:60:0.333:2	./.	0/1:35,18:8:54:0.340:2	0/1:52,27:9:79:0.342:2	./.	./.	./.
chr11	1501670	rs10742185	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:30:51:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,71:30:71:1.00:2	0/1:1,88:30:89:0.989:2	0/1:0,78:30:78:1.00:2	0/1:0,112:30:112:1.00:2	0/1:0,118:30:118:1.00:2	0/1:0,96:30:96:1.00:2	0/1:0,60:30:60:1.00:2	0/1:38,56:30:94:0.596:2
chr11	1502097	rs10767696	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:33:58:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,98:32:98:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,110:33:110:1.00:2	0/1:1,120:32:121:0.992:2	0/1:0,128:32:128:1.00:2	0/1:0,92:33:93:1.00:2	0/1:0,59:33:59:1.00:2	0/1:48,36:33:84:0.429:2
chr11	1579379	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,8:26:185:0.043:2	./.	./.	./.
chr11	1580257	rs145496997	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,6:29:13:0.462:2	./.	./.	0/1:14,15:29:29:0.517:2	./.
chr11	1605904	rs113408385	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,4:28:29:0.143:2	./.	./.	./.
chr11	1606004	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,5:29:61:0.082:2	./.	./.	./.	./.	./.	./.
chr11	1606129	rs76191756	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,4:32:12:0.333:2	./.	./.	0/1:42,13:30:55:0.236:2	0/1:48,17:29:65:0.262:2	0/1:42,12:28:55:0.222:2	0/1:61,10:29:71:0.141:2	0/1:34,8:27:42:0.190:2	0/1:0,12:32:12:1.00:2	0/1:25,8:27:33:0.242:2
chr11	1606138	rs80025267	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:33:11:0.273:2	./.	./.	0/1:38,4:32:42:0.095:2	0/1:40,7:30:48:0.149:2	0/1:36,5:31:42:0.122:2	0/1:50,4:32:54:0.074:2	./.	0/1:1,7:32:8:0.875:2	./.
chr11	1606147	rs138363822	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,6:33:41:0.146:2	0/1:34,6:32:40:0.150:2	0/1:35,5:33:40:0.125:2	./.	0/1:0,9:31:9:1.00:2	./.
chr11	1606150	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,7:22:12:0.583:2	./.
chr11	1619163	rs142577062	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,25:30:31:0.806:2	0/1:10,6:33:16:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1619181	rs61869704	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,3:34:22:0.136:2	./.	./.	./.	0/1:25,3:35:28:0.107:2	./.	./.
chr11	1619193	rs199811378	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,3:33:13:0.231:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1619202	rs61869706	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:10,3:30:15:0.231:2	0/1:6,4:31:10:0.400:2	./.	./.	0/1:9,5:28:14:0.357:2	./.	./.	./.	./.	0/1:16,5:24:22:0.238:2	0/1:13,4:31:18:0.235:2
chr11	1619396	rs35925287	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:30:6:0.500:2	0/1:0,42:30:42:1.00:2	./.	./.	./.	0/1:19,23:30:42:0.548:2	./.	./.	./.
chr11	1628948	rs117085626	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,30:30:62:0.500:2
chr11	1628965	rs57186801	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,59:32:62:0.952:2	0/1:3,34:32:38:0.919:2	./.	./.	0/1:31,43:31:74:0.581:2	0/1:43,31:31:74:0.419:2	0/1:35,50:32:85:0.588:2	0/1:46,31:31:77:0.403:2	0/1:31,38:33:69:0.551:2	0/1:3,63:31:66:0.955:2	0/1:35,29:31:64:0.453:2
chr11	1628992	rs60210378	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,54:30:56:0.964:2	0/1:6,28:30:34:0.824:2	./.	./.	0/1:30,43:30:73:0.589:2	0/1:40,29:30:70:0.420:2	0/1:37,52:31:89:0.584:2	0/1:28,35:30:63:0.556:2	0/1:32,31:30:63:0.492:2	0/1:5,54:30:59:0.915:2	0/1:33,31:29:64:0.484:2
chr11	1629034	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,6:31:26:0.231:2	./.	./.	./.	0/1:50,7:30:57:0.123:2	./.	./.	./.
chr11	1629039	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,3:32:28:0.107:2	./.	./.	./.	0/1:52,5:31:57:0.088:2	./.	./.	./.
chr11	1629043	rs12795274	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,20:31:21:0.952:2	./.	./.	./.	0/1:45,9:30:55:0.167:2	./.	./.	0/1:45,6:29:51:0.118:2
chr11	1629046	rs12808755	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,7:30:30:0.233:2	./.	./.	./.	./.	./.	./.	./.
chr11	1629062	rs12804058	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,5:33:44:0.114:2	./.	./.	./.	./.	./.	./.	./.
chr11	1629151	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:30:77:0.052:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1629152	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:31:95:0.042:2	./.	./.	./.
chr11	1629156	rs75371407	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,5:31:104:0.048:2	./.	./.	./.
chr11	1629253	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,5:29:118:0.042:2	./.	./.	./.	./.
chr11	1629693	rs7129160	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,24:33:24:1.00:2	./.	./.	./.	0/1:7,11:30:18:0.611:2	./.	./.	./.
chr11	1642884	rs6578597	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:31:44:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,58:32:58:1.00:2	0/1:27,29:31:56:0.518:2	0/1:38,27:32:65:0.415:2	0/1:19,26:30:45:0.578:2	0/1:0,68:31:68:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,55:31:55:1.00:2	0/1:14,31:31:45:0.689:2
chr11	1642908	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,3:32:39:0.077:2	./.	./.	./.	./.
chr11	1642989	rs184758001	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,4:25:16:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1643036	rs58877168	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,5:25:15:0.333:2	./.	./.	./.
chr11	1643075	rs1715357	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,4:32:19:0.211:2	./.
chr11	1643224	rs189632420	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,4:33:17:0.235:2	./.	./.	./.	./.	./.	./.	./.
chr11	1643225	rs28421796	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,12:32:20:0.600:2	./.	./.	./.	./.	./.	./.	./.
chr11	1643228	rs61867574	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,14:28:15:0.933:2	0/1:0,6:29:6:1.00:2	./.	./.	0/1:9,10:27:19:0.526:2	0/1:10,13:28:23:0.565:2	./.	0/1:3,6:25:9:0.667:2	0/1:3,14:28:17:0.824:2	0/1:9,11:29:20:0.550:2	./.
chr11	1643234	rs186088038	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,6:30:29:0.207:2	./.	./.	0/1:3,3:29:6:0.500:2	./.	./.	./.	./.
chr11	1643246	rs142004120	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,27:27:37:0.730:2	./.	./.	./.	0/1:15,5:23:20:0.250:2	./.	./.	./.
chr11	1643252	rs190925107	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,9:26:54:0.167:2	./.	./.	./.	./.	0/1:29,5:26:34:0.147:2	./.	./.
chr11	1643258	rs28696103	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,3:35:64:0.047:2	./.	./.	./.	./.	./.	./.	./.
chr11	1643267	rs150695727	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:32:7:0.429:2	0/1:17,59:31:76:0.776:2	./.	./.	./.	0/1:25,25:30:50:0.500:2	./.	./.	./.
chr11	1643287	rs181332597	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,42:30:94:0.447:2	./.	./.	./.	./.	0/1:49,47:31:96:0.490:2	./.
chr11	1643303	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:148,5:30:153:0.033:2	./.	0/1:152,5:30:157:0.032:2	./.	./.	./.	./.
chr11	1643335	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:178,11:29:189:0.058:2	./.	./.	./.	./.	0/1:184,8:34:193:0.042:2	./.	0/1:175,4:32:179:0.022:2
chr11	1651120	rs66665994	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,29:31:32:0.906:2	0/1:0,20:31:20:1.00:2	./.	./.	./.	0/1:25,14:30:39:0.359:2	./.	0/1:14,17:31:31:0.548:2	0/1:0,24:31:24:1.00:2	0/1:16,13:31:29:0.448:2	0/1:13,14:31:27:0.519:2
chr11	1651140	rs143524208	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,8:27:9:0.889:2	./.	./.	./.	0/1:7,4:25:11:0.364:2	./.	./.	./.
chr11	1651161	rs71454094	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:0,6:27:6:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,5:29:9:0.556:2	./.
chr11	1651169	rs71454095	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:29:5:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,5:28:9:0.556:2	./.
chr11	1651199	rs144216147	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1651228	rs71454096	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,14:31:14:1.00:2	0/1:0,6:29:6:1.00:2	./.	./.	0/1:10,10:30:20:0.500:2	0/1:24,9:31:33:0.273:2	0/1:16,12:29:28:0.429:2	0/1:12,13:30:25:0.520:2	0/1:0,20:32:20:1.00:2	0/1:0,29:30:29:1.00:2	0/1:1,7:32:8:0.875:2
chr11	1651232	rs117674201	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,6:22:14:0.429:2
chr11	1651251	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:32:68:0.059:2	./.	./.	./.
chr11	1651352	rs75391124	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,41:28:77:0.539:2	./.	0/1:42,34:30:76:0.447:2	./.	./.	0/1:28,39:29:67:0.582:2	./.
chr11	1651540	rs61867581	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,22:31:22:1.00:2	0/1:0,18:31:18:1.00:2	./.	./.	./.	0/1:26,19:30:45:0.422:2	./.	0/1:20,20:29:40:0.500:2	0/1:0,32:30:32:1.00:2	0/1:16,16:31:32:0.500:2	0/1:20,5:25:26:0.200:2
chr11	1651550	rs61867582	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,23:29:24:1.00:2	0/1:0,19:30:19:1.00:2	./.	./.	./.	0/1:28,19:30:47:0.404:2	./.	0/1:20,21:28:41:0.512:2	0/1:0,41:30:41:1.00:2	0/1:19,19:31:38:0.500:2	0/1:22,5:25:28:0.185:2
chr11	1651555	rs147101544	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,5:28:31:0.161:2
chr11	1651613	rs71025765	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,23:30:61:0.377:2	./.	0/1:66,29:31:95:0.305:2	./.	./.	0/1:19,15:33:34:0.441:2	0/1:0,18:30:18:1.00:2
chr11	1651615	rs74396270	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,3:32:34:0.088:2	./.
chr11	1651622	rs199686073	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,12:31:37:0.324:2
chr11	1651625	rs200756510	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,9:30:41:0.220:2
chr11	1651643	rs4752771	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,23:32:32:0.719:2	0/1:4,20:32:24:0.833:2	./.	./.	./.	0/1:47,16:31:63:0.254:2	./.	0/1:68,24:31:92:0.261:2	0/1:16,30:33:46:0.652:2	0/1:39,23:31:62:0.371:2	./.
chr11	1651645	rs77039648	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:26,3:32:29:0.103:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:30:47:0.087:2	./.
chr11	1651652	rs111318317	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,24:31:46:0.522:2
chr11	1651830	rs4752770	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,89:31:90:1.00:2	0/1:0,47:31:47:1.00:2	0/1:10,3:33:13:0.231:2	./.	./.	0/1:71,60:31:131:0.458:2	./.	0/1:75,71:31:146:0.486:2	0/1:0,115:31:115:1.00:2	0/1:50,54:31:105:0.519:2	0/1:58,35:31:93:0.376:2
chr11	1651917	rs4752769	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:1,114:31:115:0.991:2	0/1:2,79:32:81:0.975:2	0/1:8,9:31:17:0.529:2	./.	./.	0/1:88,81:31:169:0.479:2	./.	0/1:109,84:31:193:0.435:2	0/1:0,140:32:140:1.00:2	0/1:69,82:32:151:0.543:2	0/1:88,69:31:157:0.439:2
chr11	1652021	rs10838011	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,7:31:11:0.636:2	0/1:0,97:30:97:1.00:2	./.	./.	0/1:84,4:29:88:0.045:2	0/1:53,61:31:114:0.535:2	./.	./.	./.
chr11	1652103	rs10838014	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,30:33:30:1.00:2	0/1:9,8:31:17:0.471:2	./.	0/1:17,9:33:26:0.346:2	0/1:22,9:33:31:0.290:2	./.	0/1:5,8:31:13:0.615:2	0/1:13,28:33:41:0.683:2
chr11	1718492	rs58645950	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,41:30:104:0.394:2	./.	./.	./.
chr11	1718833	rs73404785	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,52:29:117:0.444:2	./.	./.	./.
chr11	1769085	rs190833491	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,71:29:136:0.526:2	./.	./.	./.	./.	./.	0/1:34,53:30:87:0.609:2	./.
chr11	1775385	rs78735768	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,18:30:27:0.667:2	./.	./.	./.	./.	./.	./.
chr11	1778725	rs200471178	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,9:15:74:0.122:2	./.	./.	./.	./.	./.
chr11	1780205	rs11555039	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,69:27:160:0.431:2	./.	./.	0/1:83,76:28:159:0.478:2	./.	./.	./.
chr11	1780277	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:33:106:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1780867	rs2230067	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,12:32:30:0.400:2	./.	./.	0/1:24,13:31:37:0.351:2	./.	./.	./.
chr11	1782594	rs17571	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,47:30:87:0.540:2	./.	./.	0/1:54,58:30:112:0.518:2	./.	./.	./.
chr11	1855797	rs138498683	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,29:32:58:0.500:2	./.	./.	./.	./.
chr11	1855854	rs2063551	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,46:32:47:0.979:2	0/1:0,23:30:23:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,63:32:63:1.00:2	0/1:33,30:32:63:0.476:2
chr11	1857173	rs564271	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:28:33:1.00:2	0/1:0,15:26:15:1.00:2	0/1:0,3:23:3:1.00:2	0/1:0,58:28:59:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,64:28:64:1.00:2	0/1:0,57:27:57:1.00:2	0/1:1,43:28:44:0.977:2	0/1:0,44:27:45:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,33:27:34:1.00:2
chr11	1857243	rs907608	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,24:32:39:0.615:2	./.	0/1:28,19:32:47:0.404:2	./.	./.	./.
chr11	1857270	rs907609	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,20:31:28:0.714:2	./.	0/1:13,19:32:32:0.594:2	./.	./.	./.
chr11	1857747	rs3741232	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,4:33:12:0.333:2	0/1:4,58:32:62:0.935:2	./.	0/1:1,70:32:71:0.986:2	0/1:33,18:32:51:0.353:2	0/1:42,40:33:83:0.488:2	0/1:30,12:31:42:0.286:2	0/1:16,18:31:34:0.529:2	./.
chr11	1857751	rs3741231	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,4:33:12:0.364:2	0/1:4,62:32:66:0.939:2	./.	0/1:1,74:32:75:0.987:2	0/1:42,18:32:60:0.300:2	0/1:49,38:31:87:0.437:2	0/1:31,13:33:44:0.295:2	0/1:17,20:30:37:0.541:2	./.
chr11	1857762	rs3741230	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:2,35:32:37:0.946:2	0/1:0,25:32:25:1.00:2	0/1:3,10:31:13:0.769:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1857985	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:29:35:0.114:2	./.	./.	./.	./.	./.
chr11	1858262	rs484955	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,50:31:118:0.424:2	./.	./.	./.
chr11	1858479	rs138799724	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,6:30:12:0.500:2	./.	./.	./.	./.	./.
chr11	1858572	rs2292474	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,8:28:8:1.00:2	0/1:1,3:31:4:0.750:2	./.	./.	./.	./.
chr11	1861760	rs17845989	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,26:30:26:1.00:2	0/1:0,16:29:16:1.00:2	./.	0/1:0,36:31:36:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,27:30:28:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,12:31:12:1.00:2	0/1:5,9:32:14:0.643:2
chr11	1862086	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,55:32:91:0.604:2	./.	./.
chr11	1874404	rs2089910	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,2:33:4:0.500:2	0/1:20,11:33:31:0.355:2	./.	./.	0/1:15,3:30:18:0.167:2	./.	./.	0/1:11,13:31:24:0.542:2	0/1:7,17:33:24:0.708:2
chr11	1887806	rs7938342	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,18:30:18:1.00:2	0/1:0,11:31:11:1.00:2	./.	0/1:12,19:30:31:0.613:2	0/1:13,10:30:23:0.435:2	./.	0/1:12,9:31:21:0.429:2	./.	0/1:0,27:31:27:1.00:2	0/1:0,10:29:10:1.00:2	0/1:13,9:30:23:0.409:2
chr11	1890971	rs76102571	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:31:16:0.375:2	./.	./.	0/1:123,4:31:127:0.031:2	./.	./.	./.	./.	0/1:51,44:32:95:0.463:2
chr11	1890990	rs592373	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,97:30:98:0.990:2	0/1:0,61:29:61:1.00:2	0/1:4,6:26:10:0.600:2	0/1:38,47:30:85:0.553:2	0/1:37,45:28:82:0.549:2	./.	0/1:22,33:30:55:0.600:2	0/1:0,104:29:105:1.00:2	0/1:0,94:30:94:1.00:2	0/1:1,58:30:59:0.983:2	0/1:38,41:29:79:0.519:2
chr11	1891722	rs686722	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,27:31:28:0.964:2	0/1:0,15:31:15:1.00:2	0/1:0,4:31:4:1.00:2	0/1:13,27:31:40:0.675:2	./.	./.	./.	./.	0/1:12,18:32:30:0.600:2	0/1:14,5:33:19:0.263:2	0/1:13,16:31:29:0.552:2
chr11	1901366	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:31:162:0.025:2	./.	./.	./.	./.
chr11	1902768	rs621679	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:29:50:1.00:2	0/1:1,26:29:27:0.963:2	0/1:3,3:31:6:0.500:2	0/1:11,18:29:30:0.621:2	./.	./.	./.	./.	0/1:19,24:30:43:0.558:2	0/1:6,23:30:29:0.793:2	0/1:0,20:30:20:1.00:2
chr11	1902771	rs147746785	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,11:32:27:0.423:2	./.	./.	./.	./.	./.	./.
chr11	1902793	rs11545725	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:31:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1907964	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:34:86:0.047:2	./.	./.	./.	./.
chr11	1908465	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,5:30:126:0.040:2	0/1:154,7:28:161:0.043:2	./.	./.	./.
chr11	1910635	rs869444	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.
chr11	1910707	rs613638	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,5:31:5:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,7:27:7:1.00:2	./.	./.	0/1:0,2:35:2:1.00:2	0/1:0,5:30:5:1.00:2	./.
chr11	1911115	rs11041692	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,14:31:14:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,3:29:3:1.00:2	0/1:0,18:30:18:1.00:2	0/1:1,7:31:8:0.875:2	0/1:10,5:30:15:0.333:2	0/1:0,14:30:14:1.00:2	./.	0/1:0,12:31:12:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,14:29:14:1.00:2
chr11	1911253	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:32:8:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	1911439	rs17173834	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,14:30:37:0.378:2
chr11	1959704	rs140388684	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,31:30:93:0.333:2	./.	./.	./.	./.	./.
chr11	1959707	rs4727	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,103:31:103:1.00:2	./.	./.	./.	./.	./.	0/1:43,43:31:86:0.500:2	0/1:0,92:31:92:1.00:2
chr11	1977552	rs12812	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,21:31:37:0.568:2	0/1:10,23:31:33:0.697:2	./.	./.	./.	./.	./.
chr11	1993884	rs217734	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,26:33:43:0.605:2	./.	./.
chr11	1993975	rs190063	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,15:32:15:1.00:2	0/1:0,4:33:4:1.00:2	./.	0/1:0,26:31:26:1.00:2	0/1:15,9:32:24:0.375:2	0/1:10,4:29:14:0.286:2	0/1:0,24:32:24:1.00:2	0/1:0,28:32:28:1.00:2	0/1:1,27:33:28:0.964:2	0/1:0,12:32:12:1.00:2	0/1:0,15:33:15:1.00:2
chr11	2154797	.	T	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:41,16:12:57:0.281:2	./.	./.	./.	0/1:125,51:8:177:0.290:2	./.	0/1:129,36:9:166:0.218:2	./.	./.	0/1:69,20:10:89:0.225:2
chr11	2167543	rs1003483	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,5:32:19:0.263:2	0/1:7,6:31:13:0.462:2	0/1:8,11:31:19:0.579:2	./.	./.	0/1:0,13:34:13:1.00:2	0/1:16,7:33:23:0.304:2	0/1:0,9:32:9:1.00:2
chr11	2167618	rs1003484	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,3:29:9:0.333:2	0/1:8,5:27:13:0.385:2	0/1:2,3:29:5:0.600:2	0/1:4,5:30:9:0.556:2	0/1:0,7:25:7:1.00:2	./.	0/1:0,11:27:11:1.00:2
chr11	2169014	rs10770125	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:31:3:1.00:2	0/1:15,12:33:27:0.444:2	0/1:9,6:30:15:0.400:2	0/1:13,22:33:35:0.629:2	./.	./.	0/1:0,25:34:25:1.00:2	0/1:11,10:32:21:0.476:2	0/1:0,14:32:14:1.00:2
chr11	2181060	rs3842753	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,58:30:59:0.983:2	0/1:1,39:31:40:0.975:2	0/1:0,8:32:8:1.00:2	0/1:0,84:32:84:1.00:2	0/1:6,86:30:92:0.935:2	0/1:0,86:31:86:1.00:2	./.	0/1:109,47:32:156:0.301:2	0/1:2,91:31:93:0.978:2	0/1:84,39:30:123:0.317:2	0/1:0,76:30:76:1.00:2
chr11	2181073	rs3842752	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,97:31:192:0.505:2	./.	./.	./.	./.
chr11	2188238	rs6357	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,32:31:82:0.390:2	0/1:34,19:31:53:0.358:2	./.	./.	./.	0/1:28,20:31:48:0.417:2
chr11	2189081	rs191712999	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,24:32:53:0.453:2	0/1:9,14:31:23:0.609:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	2190951	rs6356	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,67:31:68:0.985:2	0/1:0,39:31:39:1.00:2	0/1:12,12:32:24:0.500:2	0/1:1,74:31:75:0.987:2	0/1:47,24:32:71:0.338:2	0/1:41,56:31:97:0.577:2	./.	0/1:55,26:31:81:0.321:2	0/1:0,97:33:97:1.00:2	./.	./.
chr11	2291715	rs7126721	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,3:24:3:1.00:2	0/1:0,9:30:9:1.00:2	./.	0/1:0,4:30:4:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr11	2291722	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:29:6:0.667:2	./.	./.
chr11	2291982	rs968528	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,54:29:56:0.982:2	0/1:2,52:30:54:0.963:2	./.	0/1:44,46:29:92:0.511:2	./.	./.	./.	0/1:78,34:28:112:0.304:2	./.	./.	./.
chr11	2292080	rs55930300	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,23:30:45:0.511:2	0/1:10,23:30:33:0.697:2	0/1:12,16:29:28:0.571:2
chr11	2320884	rs1501466	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,85:30:85:1.00:2	0/1:69,43:30:112:0.384:2	0/1:79,70:29:149:0.470:2	./.	./.	./.
chr11	2323022	rs12276847	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,17:31:18:0.944:2	0/1:0,18:30:18:1.00:2	0/1:5,3:28:8:0.375:2	0/1:28,17:28:45:0.378:2	0/1:41,26:29:67:0.388:2	./.	./.	./.	./.	0/1:16,16:27:32:0.500:2	0/1:11,30:30:41:0.732:2
chr11	2323029	rs756924	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:32:20:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,70:33:70:1.00:2	0/1:0,49:32:50:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,81:33:81:1.00:2	0/1:0,46:32:46:1.00:2	0/1:1,31:32:32:0.969:2	0/1:0,40:31:40:1.00:2
chr11	2324041	rs2074022	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:27:61:1.00:2	0/1:0,34:26:34:1.00:2	0/1:0,13:28:13:1.00:2	0/1:0,81:28:81:1.00:2	0/1:1,66:28:67:0.985:2	0/1:0,79:27:79:1.00:2	0/1:0,79:27:79:1.00:2	0/1:0,99:27:99:1.00:2	0/1:0,82:29:82:1.00:2	0/1:0,69:27:69:1.00:2	0/1:0,59:27:59:1.00:2
chr11	2325427	rs61744929	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,11:26:22:0.500:2	./.	./.	./.	0/1:13,11:28:24:0.458:2	./.	./.
chr11	2329995	rs11554947	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,97:32:97:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,180:32:180:1.00:2	0/1:4,151:31:155:0.974:2	0/1:0,168:31:168:1.00:2	0/1:1,169:32:170:0.994:2	0/1:1,182:32:183:0.995:2	0/1:0,142:32:142:1.00:2	0/1:0,95:32:95:1.00:2	0/1:2,83:31:85:0.976:2
chr11	2330563	rs2521275	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:32:19:1.00:2	0/1:2,10:32:12:0.833:2	0/1:0,6:32:6:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,15:32:15:1.00:2	0/1:1,30:33:31:0.968:2	0/1:0,21:32:21:1.00:2	0/1:0,19:32:19:1.00:2
chr11	2416705	rs143644902	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,56:28:104:0.538:2	./.	./.	./.	./.	./.
chr11	2423913	rs2234278	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,34:31:79:0.430:2	./.	./.	./.	./.
chr11	2424541	rs2234279	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,31:33:79:0.392:2	./.	./.	./.	./.
chr11	2424684	rs2234283	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:32:42:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,58:30:58:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,68:31:68:1.00:2	0/1:0,67:30:67:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,67:31:67:1.00:2	0/1:1,41:30:42:0.976:2
chr11	2425035	rs2234286	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,65:31:107:0.607:2	./.	./.
chr11	2427291	rs800342	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,26:29:27:0.963:2	0/1:0,22:32:22:1.00:2	./.	0/1:0,68:32:68:1.00:2	0/1:32,36:31:68:0.529:2	0/1:0,25:31:26:1.00:2	0/1:2,58:32:60:0.967:2	0/1:1,58:30:59:0.983:2	0/1:23,16:31:39:0.410:2	0/1:0,39:32:39:1.00:2	0/1:0,27:29:27:1.00:2
chr11	2432666	rs34364959	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:13,11:32:24:0.458:2	0/1:11,14:32:25:0.560:2	./.	0/1:33,19:30:52:0.365:2	./.	0/1:37,26:31:63:0.413:2	./.	./.	./.	0/1:14,10:32:24:0.417:2	./.
chr11	2432964	rs2074234	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,32:27:57:0.561:2	0/1:24,18:28:42:0.429:2	0/1:0,3:25:3:1.00:2	0/1:0,99:28:100:1.00:2	0/1:92,48:27:140:0.343:2	0/1:55,64:28:119:0.538:2	./.	./.	./.	0/1:0,85:28:85:1.00:2	0/1:28,33:27:61:0.541:2
chr11	2435426	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2
chr11	2435946	rs4929981	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	0/1:0,2:27:2:1.00:2	./.	0/1:0,4:29:4:1.00:2	0/1:0,4:29:4:1.00:2	./.	0/1:0,6:30:6:1.00:2
chr11	2435956	rs4929982	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	0/1:0,2:32:2:1.00:2	./.	0/1:0,4:32:4:1.00:2	0/1:0,9:33:9:1.00:2	./.	0/1:0,9:32:9:1.00:2
chr11	2436464	rs34551253	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:31:8:0.375:2	./.	./.	./.	./.	./.	./.	./.
chr11	2438963	rs34350821	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,15:30:34:0.441:2	0/1:6,10:31:16:0.625:2	0/1:2,3:31:5:0.600:2	0/1:27,42:31:69:0.609:2	0/1:28,26:29:54:0.481:2	0/1:27,24:29:51:0.471:2	./.	./.	./.	0/1:30,25:31:55:0.455:2	./.
chr11	2439542	rs3986599	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,40:32:80:0.500:2	0/1:9,19:32:28:0.679:2	0/1:2,9:32:11:0.818:2	0/1:0,75:32:75:1.00:2	0/1:46,26:32:72:0.361:2	0/1:0,48:32:48:1.00:2	0/1:0,45:32:46:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,42:31:42:1.00:2
chr11	2439767	rs886277	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,58:32:146:0.397:2	./.	0/1:57,65:32:122:0.533:2	0/1:75,54:32:129:0.419:2	0/1:91,61:32:152:0.401:2	0/1:0,101:33:101:1.00:2	./.	0/1:0,100:32:100:1.00:2
chr11	2608860	rs199472776	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,19:32:37:0.514:2	./.	./.	./.
chr11	2797237	rs1057128	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:15,19:31:34:0.559:2	0/1:19,11:31:30:0.367:2	./.	./.	./.	./.	0/1:45,55:32:100:0.550:2	./.	./.	0/1:24,24:31:48:0.500:2	./.
chr11	2869188	rs11601907	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,6:33:19:0.316:2	0/1:7,5:31:12:0.417:2	./.	./.	./.	0/1:15,33:30:48:0.688:2	./.	./.	./.	./.	./.
chr11	2920666	rs365605	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,27:31:76:0.355:2	0/1:19,21:30:40:0.525:2	0/1:8,4:31:12:0.333:2	0/1:52,35:30:87:0.402:2	0/1:50,26:31:76:0.342:2	0/1:3,116:30:119:0.975:2	0/1:45,65:32:110:0.591:2	./.	0/1:1,97:31:98:0.990:2	0/1:39,38:31:77:0.494:2	./.
chr11	2920764	rs74840067	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,20:31:39:0.513:2	./.
chr11	2924591	rs1048046	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,29:30:58:0.500:2	0/1:22,17:29:39:0.436:2	./.	./.	./.	./.	./.	./.	0/1:44,39:30:83:0.470:2	./.	./.
chr11	2924610	rs1048047	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,35:31:66:0.530:2	0/1:26,26:31:52:0.500:2	0/1:8,13:32:21:0.619:2	0/1:0,87:30:87:1.00:2	0/1:39,48:31:87:0.552:2	0/1:34,49:30:83:0.590:2	./.	0/1:43,62:31:106:0.590:2	0/1:1,94:32:95:0.989:2	0/1:25,35:32:60:0.583:2	0/1:32,29:31:61:0.475:2
chr11	2929552	rs429886	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:31:29:1.00:2	0/1:2,25:31:27:0.926:2	0/1:0,2:33:2:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,61:29:61:1.00:2	0/1:27,41:31:68:0.603:2	0/1:35,23:30:58:0.397:2	0/1:1,62:31:63:0.984:2	0/1:0,60:32:60:1.00:2	0/1:0,35:30:35:1.00:2	0/1:32,19:32:51:0.373:2
chr11	2938242	rs3764892	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:27,20:31:47:0.426:2	0/1:12,15:30:27:0.556:2	./.	./.	./.	./.	./.	0/1:29,32:29:62:0.525:2	0/1:22,35:31:57:0.614:2	0/1:40,6:29:46:0.130:2	0/1:0,60:30:60:1.00:2
chr11	2938255	rs3764893	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,61:28:61:1.00:2	./.	./.	0/1:35,34:27:69:0.493:2	./.	./.	0/1:32,6:25:40:0.158:2	./.
chr11	2938257	rs3764894	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,61:28:61:1.00:2	./.	./.	0/1:30,34:26:64:0.531:2	./.	./.	0/1:35,6:27:41:0.146:2	./.
chr11	2939220	rs147539952	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,3:33:42:0.071:2	./.	./.	./.	./.	./.	./.
chr11	2940236	rs444198	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,31:31:31:1.00:2	0/1:2,17:31:19:0.895:2	./.	./.	0/1:0,40:31:40:1.00:2	0/1:30,20:31:50:0.400:2	0/1:20,20:32:40:0.500:2	0/1:0,36:32:36:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,29:32:29:1.00:2
chr11	2943671	rs1129782	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,50:31:50:1.00:2	0/1:0,43:32:43:1.00:2	./.	./.	./.	./.	./.	./.	0/1:53,31:33:85:0.369:2	./.	0/1:23,19:33:42:0.452:2
chr11	2950558	rs13390	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,8:31:17:0.471:2	./.	./.	./.	./.
chr11	2950619	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.
chr11	2993353	rs2411767	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,45:32:101:0.446:2	./.	0/1:67,65:30:132:0.492:2
chr11	2999507	rs3814964	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:30,17:32:47:0.362:2	0/1:14,13:31:27:0.481:2	0/1:0,9:30:9:1.00:2	./.	0/1:2,32:30:34:0.941:2	0/1:0,61:30:61:1.00:2	0/1:32,13:30:45:0.289:2	./.	0/1:27,17:30:44:0.386:2	0/1:15,32:30:47:0.681:2	0/1:32,34:30:66:0.515:2
chr11	3000395	rs10488674	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,30:31:72:0.417:2	0/1:27,22:32:49:0.449:2	./.	./.	./.	./.	./.	./.	0/1:36,34:32:70:0.486:2	0/1:87,4:32:91:0.044:2	0/1:85,45:30:130:0.346:2
chr11	3028140	rs729662	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:16,21:32:37:0.568:2	0/1:8,9:33:17:0.529:2	0/1:0,12:31:12:1.00:2	./.	0/1:0,56:32:56:1.00:2	0/1:2,52:32:54:0.963:2	0/1:35,30:32:65:0.462:2	./.	0/1:27,34:33:61:0.557:2	0/1:29,13:33:42:0.310:2	0/1:22,21:32:43:0.488:2
chr11	3059360	rs12796489	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,39:32:90:0.433:2	./.	./.	./.	./.
chr11	3078536	rs4758463	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:28:3:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr11	3111866	rs2277301	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,41:31:75:0.547:2	0/1:15,25:32:40:0.625:2	0/1:3,3:31:6:0.500:2	0/1:36,37:29:73:0.507:2	./.	./.	./.	./.	0/1:28,29:31:57:0.509:2	./.	0/1:18,23:30:41:0.561:2
chr11	3114190	rs35733103	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,33:31:62:0.532:2	./.	./.	./.	0/1:23,27:32:50:0.540:2	./.	./.
chr11	3129027	rs3741350	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,25:33:49:0.510:2	0/1:13,13:32:26:0.500:2	0/1:2,4:32:6:0.667:2	0/1:0,82:33:82:1.00:2	0/1:28,44:31:72:0.611:2	0/1:33,29:32:62:0.468:2	./.	0/1:26,28:32:54:0.519:2	./.	0/1:42,26:33:68:0.382:2	./.
chr11	3140807	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,4:28:87:0.046:2	./.	./.	./.	./.	./.	./.
chr11	3141744	rs34950527	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,42:30:70:0.600:2	0/1:55,70:29:125:0.560:2	0/1:39,47:31:86:0.547:2	./.	0/1:39,23:30:62:0.371:2
chr11	3249253	rs34515898	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	0/1:25,27:32:52:0.519:2	./.	./.	0/1:29,20:32:49:0.408:2	0/1:24,21:32:45:0.467:2	./.	0/1:12,10:30:22:0.455:2
chr11	3249552	rs4391795	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,4:31:5:0.800:2	./.	./.	0/1:0,7:32:7:1.00:2	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.
chr11	3249829	rs11026040	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,26:31:53:0.500:2	0/1:41,28:32:69:0.406:2	./.	./.	0/1:21,28:31:49:0.571:2	./.
chr11	3249984	rs12295710	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,34:32:34:1.00:2	0/1:19,20:32:40:0.513:2	0/1:20,18:32:38:0.474:2	0/1:19,11:32:30:0.367:2	./.	0/1:13,15:30:28:0.536:2	./.	./.
chr11	3380465	.	T	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,4:32:39:0.103:2	0/1:38,4:32:42:0.095:2	./.	0/1:21,3:31:24:0.125:2	./.	./.	./.	0/1:56,6:31:62:0.097:2
chr11	3380510	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,5:34:70:0.071:2
chr11	3380633	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,3:30:29:0.103:2	./.	./.	./.	./.
chr11	3381028	rs375079282	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,12:30:35:0.343:2	./.	./.	./.	./.	./.	./.
chr11	3381369	rs62619253	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,31:29:73:0.431:2	./.	./.	./.	0/1:48,38:28:86:0.442:2	./.
chr11	3400237	rs2301567	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,23:30:49:0.469:2	./.
chr11	3659993	rs2271586	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,28:31:70:0.400:2	./.	./.	./.	0/1:48,37:34:85:0.435:2	./.	./.
chr11	3661140	rs4910876	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,13:32:13:1.00:2	0/1:0,16:31:16:1.00:2	./.	0/1:0,11:32:11:1.00:2	0/1:0,27:30:28:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,25:32:25:1.00:2
chr11	3663021	rs75902876	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,12:31:32:0.375:2	0/1:29,14:30:43:0.326:2	0/1:21,15:30:36:0.417:2	./.	./.	./.	./.
chr11	3681051	rs61998205	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,11:32:22:0.500:2	./.	./.
chr11	3681115	rs35136756	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,16:29:43:0.372:2	./.	./.
chr11	3681519	rs2280134	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,18:27:18:1.00:2	0/1:0,10:26:10:1.00:2	./.	0/1:0,13:24:13:1.00:2	0/1:9,4:29:13:0.308:2	0/1:0,14:27:14:1.00:2	./.	0/1:11,12:23:23:0.522:2	0/1:0,14:27:14:1.00:2	./.	0/1:0,17:22:17:1.00:2
chr11	3681549	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	3687626	rs2231547	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,9:28:22:0.409:2	./.	0/1:5,4:28:9:0.444:2
chr11	3687651	rs2231546	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,20:33:46:0.435:2	./.	0/1:16,19:32:35:0.543:2
chr11	3687743	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:32:161:0.025:2	./.	./.
chr11	3690540	rs143738030	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:33:88:0.045:2	./.
chr11	3714489	rs1875	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,26:30:49:0.531:2	./.	./.	./.	./.	0/1:23,19:31:42:0.452:2	./.
chr11	3723781	rs35404087	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,67:34:142:0.472:2	./.	./.
chr11	3723941	rs35488940	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,8:31:17:0.471:2	./.	./.	0/1:4,113:31:117:0.966:2	./.	./.	0/1:71,66:33:137:0.482:2	./.	./.
chr11	3752743	.	T	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:117,20:11:138:0.146:2	./.	./.	./.	./.	./.	./.	0/1:106,28:8:134:0.209:2	0/1:131,21:10:153:0.138:2	0/1:118,24:9:143:0.169:2	0/1:109,22:10:132:0.168:2
chr11	3789841	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:152,4:31:156:0.026:2	./.	./.	./.	./.	./.	./.
chr11	3819102	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,11:11:46:0.239:2	./.	./.
chr11	3849365	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:32:99:0.040:2	./.	./.	./.	./.	./.
chr11	4095738	rs199615736	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	4103524	rs2304891	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,86:32:86:1.00:2	./.	0/1:0,87:32:87:1.00:2	0/1:1,85:32:86:0.988:2	0/1:63,49:31:112:0.438:2	0/1:52,57:33:109:0.523:2	./.	0/1:41,45:31:86:0.523:2
chr11	4141132	rs183484	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:32:64:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,87:31:87:1.00:2	./.	0/1:0,89:31:89:1.00:2	0/1:1,100:31:101:0.990:2	0/1:69,53:31:122:0.434:2	0/1:46,50:33:96:0.521:2	./.	0/1:55,59:32:114:0.518:2
chr11	4159457	rs9937	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:29:33:1.00:2	0/1:1,23:29:24:0.958:2	0/1:0,4:30:4:1.00:2	0/1:0,53:30:53:1.00:2	./.	0/1:1,46:28:47:0.979:2	0/1:1,14:29:15:0.933:2	0/1:30,19:27:49:0.388:2	0/1:39,24:31:63:0.381:2	./.	0/1:46,24:30:70:0.343:2
chr11	4159466	rs1042858	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:33:34:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,25:33:25:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,60:33:60:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,59:33:59:1.00:2
chr11	4388905	rs11031960	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	0/1:23,8:29:31:0.258:2	./.	0/1:29,16:32:45:0.356:2	0/1:30,38:32:68:0.559:2	0/1:33,19:32:52:0.365:2	0/1:24,26:30:50:0.520:2	./.
chr11	4411241	rs926101	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,13:32:51:0.255:2	./.	./.	./.	./.	./.	./.	./.
chr11	4471276	rs331537	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,81:31:155:0.523:2	./.	./.	0/1:60,65:31:125:0.520:2	./.	./.	./.	./.
chr11	4471473	rs7934336	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,42:31:96:0.438:2	./.	./.	0/1:38,43:32:81:0.531:2	./.	./.	./.	./.
chr11	4510285	rs96489	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:70,50:30:120:0.417:2	0/1:47,41:28:88:0.466:2	./.	0/1:87,85:29:172:0.494:2	0/1:84,48:28:132:0.364:2	0/1:73,73:28:146:0.500:2	./.	0/1:112,86:29:198:0.434:2	./.	./.	0/1:103,60:28:163:0.368:2
chr11	4510342	rs138616789	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,77:32:174:0.443:2	./.	./.	./.	./.	./.
chr11	4510535	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,5:28:131:0.038:2	./.
chr11	4510587	rs331510	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,100:31:176:0.568:2	0/1:50,50:32:100:0.500:2	./.	./.	./.	0/1:72,106:31:178:0.596:2	./.	0/1:91,99:31:190:0.521:2	./.	./.	0/1:93,70:31:163:0.429:2
chr11	4510625	rs145681165	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2
chr11	4510629	rs138371378	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,99:30:187:0.529:2	./.	./.	./.	./.	./.	./.	./.
chr11	4566711	rs2709182	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,168:32:168:1.00:2	0/1:1,94:31:95:0.989:2	0/1:11,13:30:24:0.542:2	0/1:95,88:31:183:0.481:2	0/1:0,174:31:174:1.00:2	0/1:83,94:30:178:0.531:2	./.	0/1:0,184:31:184:1.00:2	0/1:92,89:32:182:0.492:2	./.	0/1:85,86:31:171:0.503:2
chr11	4566768	rs147386851	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,91:31:193:0.472:2
chr11	4566817	rs201225598	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,71:32:189:0.376:2	./.
chr11	4566870	rs61747520	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,87:31:169:0.515:2	./.	./.	0/1:104,78:32:182:0.429:2	./.	./.	./.
chr11	4566923	rs193125511	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,45:31:92:0.489:2	./.	./.	./.	./.	./.	./.	./.
chr11	4567185	rs12295898	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:88,90:30:178:0.506:2	0/1:55,71:29:126:0.563:2	0/1:20,7:30:27:0.259:2	./.	0/1:115,83:29:198:0.419:2	./.	./.	./.	./.	./.	./.
chr11	4567335	rs2657167	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,29:31:68:0.426:2	0/1:16,10:31:26:0.385:2	./.	0/1:35,33:33:69:0.485:2	0/1:30,27:32:57:0.474:2	0/1:29,37:31:66:0.561:2	./.	0/1:2,76:32:78:0.974:2	0/1:43,26:32:69:0.377:2	./.	0/1:35,34:32:69:0.493:2
chr11	4592718	rs11826422	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,44:32:114:0.386:2	./.	./.
chr11	4592725	rs11821558	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,47:32:117:0.402:2	./.	./.
chr11	4593500	rs74052438	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,64:32:126:0.508:2	./.	./.	./.	./.	./.	./.	./.
chr11	4594545	rs12795289	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,45:33:102:0.441:2
chr11	4598956	rs79448530	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:19,5:31:24:0.208:2	0/1:10,10:32:20:0.500:2	./.	./.	0/1:34,22:31:56:0.393:2	./.	./.	./.	./.	./.	./.
chr11	4608116	rs7128702	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:52,48:33:100:0.480:2	0/1:39,51:32:90:0.567:2	./.	./.	0/1:42,43:32:85:0.506:2	./.	./.	./.	./.	./.	./.
chr11	4608138	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,5:31:168:0.030:2	./.	0/1:164,8:31:172:0.047:2
chr11	4608242	rs61744242	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,54:32:198:0.273:2
chr11	4608262	rs12793957	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:155,37:32:192:0.193:2	0/1:154,33:31:187:0.176:2	./.	0/1:178,19:32:197:0.096:2	0/1:154,45:31:199:0.226:2	0/1:156,38:31:194:0.196:2	0/1:93,107:32:200:0.535:2	0/1:166,33:32:199:0.166:2	0/1:87,109:32:196:0.556:2	0/1:177,17:31:194:0.088:2	0/1:142,51:32:193:0.264:2
chr11	4608393	rs56002758	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:188,7:31:195:0.036:2	0/1:155,9:32:164:0.055:2	./.	0/1:180,9:32:189:0.048:2	0/1:183,11:32:194:0.057:2	0/1:177,10:31:187:0.053:2	0/1:174,14:32:188:0.074:2	./.	0/1:188,7:32:195:0.036:2	./.	0/1:172,15:33:187:0.080:2
chr11	4608405	rs2201338	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:187,4:32:191:0.021:2	./.	./.	0/1:177,4:36:181:0.022:2	./.	./.	./.	0/1:169,4:32:173:0.023:2
chr11	4608542	rs1847632	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:80,66:32:146:0.452:2	0/1:49,40:32:89:0.449:2	./.	0/1:72,75:32:147:0.510:2	./.	0/1:77,69:31:146:0.473:2	0/1:78,52:31:130:0.400:2	./.	0/1:86,56:33:142:0.394:2	./.	0/1:72,64:32:136:0.471:2
chr11	4608709	rs146669514	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:157,6:32:163:0.037:2	./.	./.	./.	./.	./.	./.
chr11	4608914	rs200542123	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:175,4:31:179:0.022:2	./.	./.	./.	./.	./.	./.	./.	0/1:82,95:33:177:0.537:2	./.	./.
chr11	4615390	rs2010722	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,153:31:153:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,23:30:23:1.00:2	0/1:135,59:30:194:0.304:2	0/1:0,147:30:147:1.00:2	0/1:0,146:30:147:1.00:2	0/1:0,177:30:177:1.00:2	0/1:3,188:30:191:0.984:2	0/1:2,178:31:180:0.989:2	0/1:0,163:30:163:1.00:2	0/1:40,135:31:175:0.771:2
chr11	4615410	rs201245587	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,27:31:196:0.138:2
chr11	4615508	rs2010719	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,172:29:174:0.989:2	0/1:2,117:29:119:0.983:2	./.	0/1:121,75:29:196:0.383:2	0/1:121,73:29:194:0.376:2	0/1:97,77:29:174:0.443:2	0/1:3,176:29:179:0.983:2	./.	0/1:2,171:30:173:0.988:2	./.	0/1:1,162:29:163:0.994:2
chr11	4615690	rs202168611	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:117,5:31:122:0.041:2	./.	./.	0/1:138,4:32:142:0.028:2	./.	./.	0/1:132,5:32:139:0.036:2	./.	0/1:118,8:32:126:0.063:2	./.	0/1:124,5:31:129:0.039:2
chr11	4615857	rs62622512	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:72,70:32:142:0.493:2	0/1:39,26:32:65:0.400:2	./.	./.	0/1:115,76:32:191:0.398:2	./.	./.	./.	./.	./.	./.
chr11	4616062	rs61997187	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:96,87:31:183:0.475:2	0/1:43,38:32:81:0.469:2	./.	./.	0/1:112,81:31:193:0.420:2	./.	./.	./.	./.	./.	./.
chr11	4616119	rs61997192	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:72,64:30:136:0.471:2	0/1:58,55:29:113:0.487:2	./.	./.	0/1:94,80:29:175:0.460:2	./.	./.	./.	./.	./.	./.
chr11	4661243	rs61740347	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:96,93:32:189:0.492:2	0/1:53,74:32:127:0.583:2	./.	./.	0/1:102,89:32:191:0.466:2	./.	./.	./.	./.	./.	./.
chr11	4661285	rs905871	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,89:32:190:0.468:2	0/1:88,101:32:189:0.534:2	./.	0/1:96,95:33:191:0.497:2	./.	0/1:1,177:32:178:0.994:2
chr11	4661568	rs61746547	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:67,50:29:117:0.427:2	0/1:43,37:28:80:0.463:2	./.	./.	0/1:78,82:29:160:0.513:2	./.	./.	./.	./.	./.	./.
chr11	4661750	rs138670452	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,50:31:126:0.397:2	./.	./.
chr11	4661826	rs79020081	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:64,30:31:94:0.319:2	0/1:35,21:32:56:0.375:2	./.	./.	0/1:81,50:31:131:0.382:2	./.	./.	./.	./.	./.	./.
chr11	4673788	rs17224476	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,47:32:104:0.452:2	0/1:30,27:32:57:0.474:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	4674575	rs3817098	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:61,42:31:103:0.408:2	0/1:29,33:31:62:0.532:2	./.	./.	0/1:59,69:30:128:0.539:2	0/1:68,66:31:135:0.493:2	0/1:66,53:32:119:0.445:2	./.	0/1:52,68:32:120:0.567:2	./.	0/1:0,108:31:108:1.00:2
chr11	4675056	rs1472230	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:30,16:33:46:0.348:2	0/1:17,12:32:29:0.414:2	./.	./.	0/1:19,14:33:33:0.424:2	0/1:21,20:32:41:0.488:2	0/1:21,24:32:45:0.533:2	./.	0/1:41,25:34:66:0.379:2	./.	0/1:0,61:33:61:1.00:2
chr11	4675158	rs721758	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,27:30:27:1.00:2	0/1:0,10:30:10:1.00:2	./.	0/1:35,13:30:48:0.271:2	0/1:0,25:30:25:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,30:31:30:1.00:2	0/1:17,10:31:27:0.370:2	0/1:0,38:31:38:1.00:2
chr11	4675199	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	4675379	rs10500609	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,10:29:23:0.435:2	./.	./.	./.	./.	./.	./.	./.
chr11	4675784	rs12282802	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,9:29:26:0.346:2	0/1:19,12:31:31:0.387:2	0/1:12,13:30:25:0.520:2	./.	0/1:12,10:33:22:0.455:2	./.	0/1:33,16:31:49:0.327:2
chr11	4675846	rs12276018	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,18:30:33:0.545:2	0/1:25,12:31:37:0.324:2	0/1:25,12:30:37:0.324:2	./.	0/1:26,18:33:44:0.409:2	./.	0/1:39,9:32:48:0.188:2
chr11	4675959	rs12282863	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,27:28:77:0.351:2	0/1:48,29:29:77:0.377:2	0/1:46,43:30:89:0.483:2	./.	0/1:78,65:31:143:0.455:2	./.	0/1:51,43:28:94:0.457:2
chr11	4676062	rs12280367	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:37,51:32:88:0.580:2	0/1:34,26:32:60:0.433:2	./.	./.	0/1:42,29:32:71:0.408:2	0/1:46,27:32:73:0.370:2	0/1:48,20:32:68:0.294:2	./.	0/1:48,43:33:91:0.473:2	./.	0/1:0,82:32:82:1.00:2
chr11	4676067	rs12421779	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,49:33:84:0.583:2	0/1:33,25:32:58:0.431:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,38:33:83:0.458:2
chr11	4676398	rs1055262	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,35:32:98:0.357:2	0/1:90,77:33:167:0.461:2	0/1:89,56:32:145:0.386:2	./.	0/1:108,77:34:185:0.416:2	./.	0/1:87,80:33:167:0.479:2
chr11	4676415	rs12418927	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,64:32:149:0.430:2	0/1:46,54:32:100:0.540:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,83:32:170:0.491:2
chr11	4676457	rs1472229	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,37:31:100:0.370:2	0/1:60,85:31:145:0.586:2	0/1:78,34:32:112:0.304:2	./.	0/1:86,57:33:143:0.399:2	./.	0/1:80,75:32:155:0.484:2
chr11	4676690	rs113949980	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:33:4:0.750:2
chr11	4703165	rs1123991	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,155:32:155:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,169:31:169:1.00:2	0/1:0,179:31:179:1.00:2	0/1:0,185:31:185:1.00:2	0/1:0,189:32:189:1.00:2	0/1:2,185:32:187:0.989:2	0/1:0,163:32:163:1.00:2	0/1:0,150:32:150:1.00:2	0/1:90,73:32:163:0.448:2
chr11	4790268	rs1030726	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,6:32:16:0.375:2	0/1:36,43:31:79:0.544:2	0/1:1,56:31:57:0.982:2	0/1:40,29:31:69:0.420:2	0/1:0,60:31:60:1.00:2	0/1:46,30:30:76:0.395:2	0/1:32,35:32:67:0.522:2	0/1:34,21:31:55:0.382:2	0/1:56,37:32:93:0.398:2
chr11	4790308	rs1030725	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,10:28:22:0.455:2	0/1:43,48:29:91:0.527:2	0/1:3,96:28:99:0.970:2	0/1:44,35:28:80:0.443:2	0/1:1,87:29:88:0.989:2	0/1:63,52:28:115:0.452:2	0/1:56,35:30:91:0.385:2	0/1:32,31:29:64:0.492:2	0/1:53,45:29:98:0.459:2
chr11	4790396	rs17324609	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,18:30:29:0.621:2	./.	0/1:1,130:31:131:0.992:2	0/1:58,54:31:112:0.482:2	0/1:87,49:31:136:0.360:2	./.	./.	0/1:44,45:32:89:0.506:2	./.
chr11	4790410	rs1030724	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,15:30:24:0.625:2	0/1:71,49:30:120:0.408:2	0/1:1,118:29:119:0.992:2	0/1:62,53:29:115:0.461:2	0/1:4,120:30:124:0.968:2	0/1:79,62:30:141:0.440:2	0/1:64,63:30:127:0.496:2	0/1:46,42:28:88:0.477:2	0/1:67,49:28:116:0.422:2
chr11	4790471	rs1030723	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,29:31:98:0.296:2	./.	./.	0/1:72,53:30:125:0.424:2	0/1:75,51:30:126:0.405:2	0/1:67,58:32:126:0.464:2	./.	0/1:76,44:30:120:0.367:2
chr11	4790474	rs11033793	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,28:32:100:0.280:2	./.	./.	0/1:76,53:29:129:0.411:2	0/1:73,51:29:126:0.411:2	0/1:65,58:31:125:0.472:2	./.	0/1:78,44:29:122:0.361:2
chr11	4790475	rs114809738	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,28:31:101:0.283:2	./.	./.	./.	./.	./.	./.	./.
chr11	4790482	rs12792898	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,10:32:14:0.714:2	./.	0/1:3,116:32:119:0.975:2	0/1:59,73:32:132:0.553:2	0/1:66,75:33:141:0.532:2	./.	./.	0/1:55,36:33:91:0.396:2	./.
chr11	4790575	rs12788102	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,18:32:28:0.643:2	./.	0/1:4,159:32:163:0.975:2	0/1:94,88:33:182:0.484:2	0/1:83,90:33:173:0.520:2	./.	./.	0/1:69,89:33:159:0.563:2	./.
chr11	4790605	rs112024216	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,14:33:20:0.700:2	./.	0/1:64,53:32:117:0.453:2	0/1:65,56:32:121:0.463:2	./.	./.	./.	./.	./.
chr11	4790671	rs11033795	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,36:30:77:0.468:2	0/1:3,57:29:60:0.950:2	0/1:44,49:29:93:0.527:2	0/1:3,50:30:53:0.943:2	0/1:45,31:30:76:0.408:2	0/1:49,34:30:83:0.410:2	0/1:26,27:29:53:0.509:2	0/1:57,38:30:95:0.400:2
chr11	4790758	rs11033796	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,34:31:79:0.430:2	0/1:1,46:31:48:0.979:2	0/1:47,46:30:93:0.495:2	0/1:3,56:32:59:0.949:2	0/1:43,37:32:80:0.463:2	0/1:60,27:32:87:0.310:2	0/1:23,31:32:54:0.574:2	0/1:38,41:31:79:0.519:2
chr11	4790857	rs11033797	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,30:32:79:0.380:2	0/1:1,38:32:39:0.974:2	0/1:51,36:32:87:0.414:2	0/1:1,53:32:54:0.981:2	0/1:32,36:32:68:0.529:2	0/1:36,25:33:61:0.410:2	0/1:39,22:33:61:0.361:2	0/1:35,44:33:80:0.557:2
chr11	4790868	rs75972277	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,29:32:74:0.392:2	./.	./.	./.	./.	./.	./.	./.
chr11	4790881	rs111736749	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,28:29:68:0.418:2	0/1:35,38:30:73:0.521:2	0/1:37,21:31:58:0.362:2	./.	0/1:40,44:30:84:0.524:2
chr11	4790948	rs11033800	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,6:32:10:0.600:2	0/1:28,16:32:44:0.364:2	0/1:2,52:32:54:0.963:2	0/1:24,32:30:56:0.571:2	0/1:0,60:31:60:1.00:2	0/1:34,22:31:56:0.393:2	0/1:29,15:33:44:0.341:2	0/1:28,17:31:45:0.378:2	0/1:27,33:31:60:0.550:2
chr11	4790951	rs11033801	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,6:33:10:0.600:2	0/1:27,16:33:43:0.372:2	0/1:2,51:32:53:0.962:2	0/1:23,32:32:55:0.582:2	0/1:0,60:32:60:1.00:2	0/1:32,22:32:54:0.407:2	0/1:27,15:33:42:0.357:2	0/1:27,15:32:42:0.357:2	0/1:27,32:33:59:0.542:2
chr11	4791111	rs17324812	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,118:33:121:0.983:2	0/1:0,93:32:93:1.00:2	./.	./.	./.	./.	./.	./.	0/1:194,4:35:199:0.020:2	./.	0/1:96,86:32:182:0.473:2
chr11	4824878	rs2053116	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,29:30:75:0.387:2	0/1:13,22:32:35:0.629:2	0/1:7,3:30:10:0.300:2	0/1:33,48:32:81:0.593:2	0/1:0,62:32:62:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,56:33:56:1.00:2	0/1:32,28:32:60:0.467:2	0/1:34,41:33:75:0.547:2	0/1:41,24:32:65:0.369:2	0/1:49,52:32:101:0.515:2
chr11	4825010	rs6578533	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,17:30:47:0.362:2	0/1:16,7:30:23:0.304:2	./.	0/1:31,22:30:53:0.415:2	0/1:1,39:30:40:0.975:2	0/1:0,53:30:53:1.00:2	0/1:0,54:30:54:1.00:2	0/1:31,28:30:59:0.475:2	0/1:33,37:31:70:0.529:2	0/1:33,17:30:50:0.340:2	0/1:17,22:29:39:0.564:2
chr11	4825225	rs7941731	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,26:32:50:0.520:2	0/1:21,13:30:34:0.382:2	0/1:3,4:33:7:0.571:2	0/1:29,29:32:58:0.500:2	0/1:1,73:31:74:0.986:2	0/1:0,75:31:75:1.00:2	0/1:1,61:31:62:0.984:2	0/1:40,50:32:90:0.556:2	0/1:42,31:33:73:0.425:2	0/1:24,17:32:41:0.415:2	0/1:26,15:31:41:0.366:2
chr11	4825349	rs17327254	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,46:32:111:0.414:2	./.	0/1:63,65:32:128:0.508:2	./.	./.	0/1:56,45:33:101:0.446:2	./.
chr11	4825816	rs79518998	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,27:31:68:0.397:2	./.	./.	./.	./.	./.	./.	./.
chr11	4842866	rs35003053	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:33:8:0.500:2	./.	0/1:0,82:32:82:1.00:2	0/1:56,49:32:105:0.467:2	0/1:52,30:32:82:0.366:2	./.	./.	0/1:50,43:32:93:0.462:2	./.
chr11	4843164	rs113211514	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,75:30:171:0.439:2	0/1:81,80:31:161:0.497:2	./.	./.	./.	./.	./.
chr11	4869649	rs12361955	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,6:32:9:0.667:2	0/1:58,55:32:113:0.487:2	0/1:0,136:32:137:1.00:2	0/1:66,52:31:118:0.441:2	0/1:85,69:32:154:0.448:2	./.	./.	0/1:50,71:32:121:0.587:2	./.
chr11	4869906	rs7117260	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:30:59:1.00:2	0/1:0,22:30:22:1.00:2	0/1:1,4:32:5:0.800:2	0/1:30,28:30:58:0.483:2	0/1:0,73:30:73:1.00:2	0/1:25,34:31:59:0.576:2	0/1:1,90:30:91:0.989:2	0/1:30,33:29:63:0.524:2	0/1:39,37:29:76:0.487:2	0/1:30,30:30:60:0.500:2	0/1:0,71:30:71:1.00:2
chr11	4870139	rs11602455	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,40:30:79:0.506:2	0/1:0,65:30:65:1.00:2	0/1:35,45:30:80:0.563:2	0/1:34,31:31:66:0.477:2	./.	./.	0/1:36,29:31:65:0.446:2	./.
chr11	4870261	rs11602499	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,6:32:14:0.429:2	0/1:96,77:32:173:0.445:2	0/1:1,143:31:144:0.993:2	0/1:110,84:32:194:0.433:2	0/1:116,78:32:194:0.402:2	./.	./.	0/1:72,50:32:122:0.410:2	./.
chr11	4870269	rs12417164	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:2,117:31:119:0.983:2	0/1:0,88:31:88:1.00:2	./.	./.	./.	./.	0/1:94,99:31:193:0.513:2	0/1:99,98:31:197:0.497:2	0/1:79,77:31:156:0.494:2	./.	0/1:0,130:31:130:1.00:2
chr11	4870284	rs35918613	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,9:34:17:0.529:2	./.	0/1:4,152:32:157:0.974:2	0/1:110,76:33:186:0.409:2	0/1:106,82:32:188:0.436:2	./.	./.	0/1:68,49:33:117:0.419:2	./.
chr11	4880892	rs11034368	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:34:10:0.500:2	0/1:42,38:32:80:0.475:2	0/1:0,57:32:57:1.00:2	0/1:40,42:32:82:0.512:2	0/1:35,21:33:56:0.375:2	./.	./.	0/1:23,20:33:43:0.465:2	./.
chr11	4880992	rs7947547	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:1,59:30:60:0.983:2	0/1:0,35:30:35:1.00:2	./.	./.	./.	./.	0/1:50,24:31:74:0.324:2	0/1:51,46:30:97:0.474:2	0/1:54,34:31:88:0.386:2	./.	0/1:0,83:31:83:1.00:2
chr11	4881229	rs112174626	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,25:33:66:0.379:2	./.	./.	./.	./.	./.	./.	./.
chr11	4903390	rs61995697	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,46:32:111:0.414:2	./.	./.	./.	./.	./.	./.	./.
chr11	4928621	rs11034596	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,25:31:63:0.403:2	./.	./.	./.	./.	0/1:30,35:33:65:0.538:2	./.	./.
chr11	4928841	rs7108225	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,59:29:145:0.407:2	0/1:46,39:29:85:0.459:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,95:30:163:0.583:2
chr11	4928866	rs7941509	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,64:32:106:0.604:2	0/1:32,34:31:66:0.515:2	0/1:11,7:30:18:0.389:2	0/1:59,59:31:118:0.500:2	0/1:0,73:30:73:1.00:2	0/1:0,116:31:116:1.00:2	0/1:0,78:30:78:1.00:2	0/1:72,42:31:114:0.368:2	0/1:74,57:31:131:0.435:2	0/1:50,48:31:98:0.490:2	0/1:66,53:32:119:0.445:2
chr11	4929061	rs10500627	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,51:33:74:0.689:2	./.	./.	./.	./.	0/1:65,46:33:111:0.414:2	./.	./.
chr11	4936608	rs12419598	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,25:32:52:0.481:2	0/1:13,11:32:24:0.458:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,18:32:44:0.409:2
chr11	4936613	rs16907312	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:26,25:31:51:0.490:2	0/1:12,11:32:23:0.478:2	./.	./.	./.	./.	0/1:21,19:30:40:0.475:2	0/1:36,24:31:60:0.400:2	0/1:25,33:32:58:0.569:2	./.	0/1:18,26:31:44:0.591:2
chr11	4944892	rs34583466	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:30:12:0.250:2	./.	0/1:2,95:28:97:0.979:2	0/1:54,52:29:106:0.491:2	0/1:80,58:28:138:0.420:2	./.	./.	0/1:48,31:28:79:0.392:2	./.
chr11	4944986	rs12796015	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:33:11:0.727:2	./.	0/1:1,67:32:68:0.985:2	0/1:53,35:32:88:0.398:2	0/1:50,57:33:107:0.533:2	./.	./.	0/1:37,28:32:65:0.431:2	./.
chr11	4945196	rs1378739	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,14:30:43:0.326:2	0/1:18,16:32:34:0.471:2	./.	./.	./.	0/1:22,28:31:50:0.560:2	./.	0/1:37,32:32:69:0.464:2	./.	0/1:18,16:33:34:0.471:2	0/1:21,21:34:42:0.500:2
chr11	4945199	rs34742470	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	0/1:4,51:31:55:0.927:2	0/1:30,21:31:51:0.412:2	0/1:39,24:30:63:0.381:2	./.	./.	0/1:19,16:31:35:0.457:2	./.
chr11	4945229	rs10836954	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,36:31:66:0.545:2	./.	./.	./.	./.	0/1:31,32:30:63:0.508:2	./.	./.
chr11	4945233	rs35264256	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,22:31:63:0.349:2	./.	./.	./.	./.	./.	./.	./.
chr11	4945236	rs35666095	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,22:32:62:0.355:2	./.	./.	./.	./.	./.	./.	./.
chr11	4967468	rs28698374	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,193:32:193:1.00:2	0/1:1,165:32:166:0.994:2	0/1:0,49:32:49:1.00:2	0/1:0,181:32:181:1.00:2	0/1:90,98:32:188:0.521:2	0/1:0,181:32:181:1.00:2	0/1:79,117:32:196:0.597:2	0/1:0,193:31:193:1.00:2	0/1:101,97:33:198:0.490:2	0/1:0,194:32:194:1.00:2	0/1:0,193:32:193:1.00:2
chr11	4967532	rs2595988	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:131,68:31:199:0.342:2	./.	0/1:156,42:30:198:0.212:2	./.	0/1:127,70:32:197:0.355:2	./.	./.
chr11	4967628	rs112033936	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:178,9:31:187:0.048:2	0/1:186,8:32:194:0.041:2	0/1:66,4:33:70:0.057:2	./.	./.	./.	./.	0/1:192,5:32:197:0.025:2	./.	0/1:171,10:31:181:0.055:2	0/1:179,11:29:190:0.058:2
chr11	4967651	rs76895759	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:141,49:31:190:0.258:2	0/1:103,79:30:182:0.434:2	0/1:6,128:30:134:0.955:2	0/1:169,28:31:197:0.142:2	0/1:131,55:31:186:0.296:2	0/1:117,74:31:191:0.387:2	0/1:108,62:31:170:0.365:2	0/1:185,9:29:195:0.046:2
chr11	4967678	rs12271991	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:182,14:32:196:0.071:2	0/1:177,21:32:198:0.106:2	./.	0/1:160,36:31:196:0.184:2	./.	0/1:117,60:30:177:0.339:2	0/1:187,11:31:198:0.056:2	0/1:186,14:31:200:0.070:2	0/1:155,42:32:197:0.213:2	0/1:171,27:31:199:0.136:2	0/1:155,34:32:189:0.180:2
chr11	4967759	rs143239713	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,64:33:195:0.328:2	./.	./.	./.	./.
chr11	4967831	rs2595987	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:166,27:32:194:0.140:2	0/1:152,24:32:176:0.136:2	0/1:172,12:30:184:0.065:2	0/1:187,11:30:198:0.056:2	0/1:188,9:34:197:0.046:2	0/1:3,48:33:51:0.941:2	0/1:190,9:31:200:0.045:2	./.
chr11	4968058	rs141671097	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,6:34:196:0.031:2	./.	./.	./.	./.	0/1:191,9:34:200:0.045:2	./.	./.
chr11	4968198	rs3845246	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,191:32:191:1.00:2	0/1:0,187:32:187:1.00:2	0/1:0,111:31:111:1.00:2	0/1:0,194:32:194:1.00:2	0/1:103,88:32:191:0.461:2	0/1:0,184:32:184:1.00:2	0/1:97,102:32:199:0.513:2	0/1:0,190:32:190:1.00:2	0/1:124,73:33:197:0.371:2	0/1:0,190:32:190:1.00:2	0/1:0,194:32:194:1.00:2
chr11	4976013	rs55827480	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:5,5:32:10:0.500:2	./.	./.	./.	./.	./.	0/1:95,6:29:101:0.059:2	./.	./.	0/1:95,6:33:101:0.059:2	0/1:0,13:32:13:1.00:2
chr11	4976077	rs2570573	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:5,13:33:18:0.722:2	0/1:0,6:32:6:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.	./.	0/1:170,8:29:178:0.045:2	0/1:188,10:31:199:0.051:2	./.	0/1:174,11:32:185:0.059:2	0/1:1,23:32:24:0.958:2
chr11	4976086	rs2570572	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,21:30:24:0.875:2	0/1:0,8:32:8:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,189:31:189:1.00:2	0/1:113,80:30:193:0.415:2	0/1:0,185:31:185:1.00:2	0/1:175,22:30:197:0.112:2	0/1:0,183:31:184:1.00:2	0/1:188,7:29:195:0.036:2	0/1:1,183:31:184:0.995:2	0/1:0,37:29:38:1.00:2
chr11	4976145	rs56066301	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:5,51:27:56:0.911:2	0/1:3,40:27:43:0.930:2	0/1:0,9:27:9:1.00:2	./.	./.	./.	0/1:176,22:26:198:0.111:2	0/1:164,29:27:193:0.150:2	./.	0/1:166,27:27:194:0.140:2	0/1:2,133:26:135:0.985:2
chr11	4976241	rs2570571	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,45:33:193:0.233:2	0/1:97,75:32:172:0.436:2	0/1:135,59:32:194:0.304:2	0/1:99,76:33:175:0.434:2	0/1:174,20:32:194:0.103:2	0/1:0,174:33:175:1.00:2	0/1:179,19:34:199:0.096:2	./.
chr11	4976291	rs55889636	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,138:31:160:0.863:2	0/1:18,90:32:108:0.833:2	0/1:3,25:30:28:0.893:2	0/1:117,75:31:192:0.391:2	./.	0/1:143,55:30:198:0.278:2	0/1:109,89:31:198:0.449:2	0/1:129,61:31:190:0.321:2	0/1:127,71:32:199:0.359:2	0/1:131,68:31:199:0.342:2	0/1:19,177:31:196:0.903:2
chr11	4976372	rs147155775	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,16:33:195:0.082:2	./.	./.	./.	./.
chr11	4976444	rs117546301	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:3,7:32:10:0.700:2	0/1:1,8:31:9:0.889:2	./.	./.	./.	./.	./.	0/1:153,8:31:161:0.050:2	./.	0/1:135,6:31:141:0.043:2	0/1:5,18:31:24:0.783:2
chr11	4976447	rs77497717	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,95:32:190:0.500:2	./.	0/1:101,89:32:190:0.468:2	./.	./.	0/1:123,76:33:199:0.382:2	./.	./.
chr11	4976554	rs2595986	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:154,43:29:197:0.218:2	0/1:157,32:31:189:0.169:2	0/1:155,33:31:188:0.176:2	0/1:163,8:31:171:0.047:2	0/1:3,76:31:79:0.962:2	0/1:193,4:32:197:0.020:2	0/1:1,60:31:61:0.984:2	./.
chr11	4976768	rs112749434	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,10:33:10:1.00:2	0/1:1,4:32:5:0.800:2	./.	0/1:147,33:32:180:0.183:2	./.	0/1:170,29:31:199:0.146:2	./.	./.	0/1:147,31:30:178:0.174:2	./.	0/1:4,18:33:22:0.818:2
chr11	4976788	rs35318834	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,132:31:190:0.695:2	./.	./.
chr11	4976811	rs28482315	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,97:32:97:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,189:31:189:1.00:2	0/1:105,94:31:199:0.472:2	0/1:0,187:31:187:1.00:2	0/1:167,31:31:198:0.157:2	0/1:0,189:32:189:1.00:2	0/1:154,44:32:198:0.222:2	0/1:0,188:32:188:1.00:2	0/1:1,176:32:178:0.994:2
chr11	5020416	rs2445290	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,180:33:184:0.978:2	0/1:3,181:32:184:0.984:2	0/1:37,19:32:56:0.339:2	0/1:0,188:33:189:1.00:2	0/1:0,194:32:194:1.00:2	0/1:0,180:32:180:1.00:2	0/1:1,186:32:187:0.995:2	0/1:2,184:33:186:0.989:2	0/1:1,187:33:188:0.995:2	0/1:0,188:32:188:1.00:2	0/1:0,173:33:174:1.00:2
chr11	5020509	rs11035066	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,96:31:194:0.495:2	0/1:105,92:31:198:0.467:2	0/1:2,178:31:180:0.989:2	./.	0/1:107,90:31:197:0.457:2	./.	0/1:91,99:31:190:0.521:2	./.
chr11	5020799	rs10768448	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:106,88:32:195:0.454:2	0/1:125,70:31:195:0.359:2	0/1:2,183:31:185:0.989:2	./.	0/1:95,100:31:195:0.513:2	./.	0/1:110,76:31:186:0.409:2	./.
chr11	5020832	rs10768450	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,84:32:195:0.431:2	0/1:124,71:31:195:0.364:2	0/1:2,191:31:193:0.990:2	./.	0/1:92,101:32:193:0.523:2	./.	0/1:98,93:32:191:0.487:2	./.
chr11	5021055	rs61734126	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,81:32:164:0.494:2	./.	./.
chr11	5021117	rs148976493	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,22:33:73:0.301:2	./.	./.	./.
chr11	5067984	rs2500016	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,8:34:12:0.667:2	0/1:2,192:33:194:0.990:2	0/1:81,78:32:159:0.491:2	0/1:1,155:32:156:0.994:2	./.	0/1:2,188:33:190:0.989:2	./.	0/1:90,73:33:163:0.448:2	./.
chr11	5068137	rs2500017	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,8:29:28:0.286:2	0/1:1,175:31:176:0.994:2	0/1:122,76:31:198:0.384:2	0/1:2,185:31:187:0.989:2	./.	0/1:1,181:31:182:0.995:2	./.	0/1:107,85:32:193:0.443:2	./.
chr11	5068177	rs2500018	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,12:32:30:0.400:2	0/1:1,188:31:189:0.995:2	0/1:109,87:31:196:0.444:2	0/1:1,183:31:185:0.995:2	./.	0/1:3,181:31:184:0.984:2	./.	0/1:96,92:31:188:0.489:2	./.
chr11	5068261	rs182304465	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,15:30:196:0.077:2	./.	./.	./.	./.
chr11	5068297	rs58664826	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,22:30:43:0.512:2	0/1:110,81:30:191:0.424:2	./.	./.	./.	0/1:119,78:30:197:0.396:2	./.	./.	./.
chr11	5068431	rs17350764	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:40,38:31:78:0.487:2	0/1:94,92:30:186:0.495:2	./.	./.	./.	0/1:101,88:30:189:0.466:2	./.	./.	./.
chr11	5068661	rs2500019	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,5:31:8:0.625:2	0/1:1,28:32:29:0.966:2	0/1:21,10:34:31:0.323:2	0/1:0,35:31:35:1.00:2	./.	0/1:3,21:31:24:0.875:2	./.	0/1:14,14:31:28:0.500:2	./.
chr11	5068662	rs57026471	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,5:32:8:0.625:2	0/1:16,13:32:29:0.448:2	./.	./.	./.	0/1:13,11:31:24:0.458:2	./.	./.	./.
chr11	5079946	rs2445332	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,26:32:81:0.321:2	0/1:25,10:31:35:0.286:2	0/1:0,7:30:7:1.00:2	0/1:0,81:31:81:1.00:2	0/1:2,42:30:44:0.955:2	0/1:1,73:30:74:0.986:2	0/1:0,49:31:49:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,102:31:102:1.00:2
chr11	5080068	rs2500052	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:45,3:33:48:0.063:2	./.	0/1:1,76:31:77:0.987:2	0/1:53,33:31:86:0.384:2	0/1:0,64:31:64:1.00:2	./.	0/1:0,96:31:96:1.00:2	0/1:49,54:33:103:0.524:2	0/1:53,37:32:90:0.411:2	./.
chr11	5080181	rs72873928	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,43:32:119:0.361:2	./.	./.	./.	./.	./.	./.	./.
chr11	5080234	rs2445333	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,44:32:104:0.423:2	0/1:0,111:32:111:1.00:2	./.	./.	0/1:99,59:33:158:0.373:2	0/1:55,46:33:101:0.455:2	./.
chr11	5080337	rs61746343	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,6:27:14:0.429:2	0/1:1,58:28:59:0.983:2	./.	./.	./.	0/1:0,47:28:47:1.00:2	./.	./.	./.
chr11	5080359	rs11035396	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,20:31:38:0.526:2	./.	0/1:18,13:31:31:0.419:2	./.	0/1:17,23:32:40:0.575:2	./.	./.
chr11	5080844	rs16909440	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:15,17:32:32:0.531:2	0/1:13,11:32:24:0.458:2	0/1:1,2:32:3:0.667:2	./.	./.	./.	0/1:18,24:32:42:0.571:2	./.	./.	0/1:18,18:32:36:0.500:2	0/1:1,55:33:56:0.982:2
chr11	5141902	rs10837374	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,37:33:74:0.500:2	0/1:31,21:33:52:0.404:2	0/1:0,8:33:8:1.00:2	0/1:0,65:33:65:1.00:2	0/1:0,32:32:32:1.00:2	0/1:1,71:32:72:0.986:2	0/1:1,33:33:34:0.971:2	0/1:1,72:33:73:0.986:2	0/1:0,53:34:53:1.00:2	0/1:45,25:32:70:0.357:2	0/1:50,49:33:99:0.495:2
chr11	5141980	rs4426129	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,30:30:55:0.545:2	0/1:19,16:30:35:0.457:2	0/1:0,12:29:12:1.00:2	0/1:0,43:30:43:1.00:2	0/1:2,20:29:22:0.909:2	0/1:0,58:30:58:1.00:2	0/1:0,32:30:32:1.00:2	0/1:2,61:30:63:0.968:2	0/1:0,48:31:48:1.00:2	0/1:27,15:29:42:0.357:2	0/1:35,28:30:63:0.444:2
chr11	5142134	rs11035760	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,16:31:36:0.444:2	./.	0/1:16,20:30:36:0.556:2	0/1:30,22:32:52:0.423:2	0/1:0,44:31:44:1.00:2	./.	./.
chr11	5142231	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:33:141:0.028:2
chr11	5142270	rs10837375	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,54:33:105:0.524:2	0/1:22,34:32:56:0.607:2	0/1:0,18:32:18:1.00:2	0/1:0,135:32:135:1.00:2	0/1:0,121:31:121:1.00:2	0/1:0,124:32:124:1.00:2	0/1:1,122:32:123:0.992:2	0/1:2,133:32:135:0.985:2	0/1:0,134:33:134:1.00:2	0/1:51,55:32:106:0.519:2	0/1:77,56:32:133:0.421:2
chr11	5142549	rs7947334	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:33:10:0.400:2	./.	0/1:24,29:31:53:0.547:2	./.	0/1:30,34:33:64:0.531:2	0/1:37,46:32:83:0.554:2	0/1:0,59:33:59:1.00:2	./.	./.
chr11	5142671	rs7944388	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,12:31:40:0.300:2	./.	0/1:29,20:32:49:0.408:2	./.	0/1:0,39:32:39:1.00:2	./.	./.
chr11	5152920	rs12289086	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,10:32:28:0.357:2	./.	./.	./.	./.	./.
chr11	5153261	rs2472530	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:48,39:29:87:0.448:2	0/1:26,30:29:56:0.536:2	0/1:1,8:30:9:0.889:2	./.	./.	./.	./.	./.	0/1:50,46:27:96:0.479:2	./.	./.
chr11	5153499	rs149098448	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,27:32:48:0.563:2
chr11	5172786	rs10768611	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:33:89:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,45:32:45:1.00:2	0/1:1,92:32:93:0.989:2	0/1:0,78:32:78:1.00:2	0/1:0,90:31:90:1.00:2	0/1:1,94:33:96:0.989:2	0/1:1,78:32:79:0.987:2	0/1:0,83:32:83:1.00:2
chr11	5173149	rs77308879	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,50:31:129:0.388:2	./.	0/1:72,64:32:136:0.471:2	./.	0/1:68,58:33:126:0.460:2	./.	./.
chr11	5221132	rs61736992	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:31:10:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	5221645	rs11512276	C	G,A	.	PASS	AC=3,5;AF=0.125,0.208;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	0/2:31:53:0.566:2	0/2:31:36:0.639:2	./.	0/1:28:63:0.397:2	./.	./.	0/2:31:69:1.00:2	0/1:30:63:0.468:2	0/2:31:65:1.00:2	0/2:32:57:0.421:2	0/1:29:62:0.452:2
chr11	5221825	rs11036212	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,39:31:72:0.542:2	0/1:24,27:31:51:0.529:2	0/1:0,8:30:8:1.00:2	0/1:60,41:31:101:0.406:2	0/1:0,88:30:89:1.00:2	0/1:0,100:30:101:1.00:2	0/1:0,99:30:99:1.00:2	0/1:62,38:31:100:0.380:2	0/1:0,98:32:98:1.00:2	0/1:30,35:31:65:0.538:2	0/1:57,42:31:99:0.424:2
chr11	5246870	rs113082294	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,40:29:88:0.455:2	./.	0/1:49,26:29:75:0.347:2	./.
chr11	5248243	rs63750898	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,43:32:91:0.473:2	0/1:35,29:31:64:0.453:2	0/1:0,9:31:9:1.00:2	0/1:55,69:32:124:0.556:2	0/1:1,79:32:80:0.988:2	0/1:0,113:31:114:1.00:2	0/1:0,105:31:105:1.00:2	0/1:52,59:31:111:0.532:2	0/1:0,118:32:118:1.00:2	0/1:71,60:33:131:0.458:2	0/1:52,56:32:108:0.519:2
chr11	5255385	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:33:126:0.032:2	./.	./.	./.	./.
chr11	5270686	rs1061234	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,2:32:2:1.00:2	0/1:0,9:31:9:1.00:2	0/1:24,3:30:27:0.111:2	./.	./.	0/1:1,6:31:7:0.857:2	0/1:0,20:31:20:1.00:2	0/1:188,8:29:196:0.041:2	0/1:0,17:31:17:1.00:2	0/1:162,7:30:169:0.041:2	0/1:175,8:31:183:0.044:2
chr11	5322520	rs12283334	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:18,17:30:35:0.486:2	0/1:11,10:31:21:0.476:2	./.	0/1:0,29:30:29:1.00:2	./.	0/1:28,15:28:43:0.349:2	./.	./.	./.	./.	./.
chr11	5322672	rs149911999	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:33:111:0.036:2	./.	./.	./.	./.
chr11	5322737	rs10837771	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:46,71:29:118:0.607:2	0/1:41,25:30:66:0.379:2	0/1:8,9:30:17:0.529:2	./.	./.	0/1:78,48:29:126:0.381:2	0/1:5,83:30:88:0.943:2	0/1:75,66:29:142:0.468:2	0/1:0,121:31:121:1.00:2	0/1:85,45:30:130:0.346:2	0/1:103,69:30:172:0.401:2
chr11	5323071	rs7118113	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:31:89:1.00:2	0/1:0,56:31:56:1.00:2	0/1:4,5:31:9:0.556:2	0/1:1,119:31:120:0.992:2	./.	0/1:0,105:31:105:1.00:2	0/1:1,71:31:72:0.986:2	0/1:56,57:30:113:0.504:2	0/1:1,114:32:115:0.991:2	0/1:38,60:32:98:0.612:2	0/1:70,59:31:129:0.457:2
chr11	5344592	rs11036814	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,46:33:102:0.451:2	0/1:31,43:31:74:0.581:2	./.
chr11	5344681	rs11036815	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:82,92:31:174:0.529:2	0/1:47,40:32:87:0.460:2	./.	0/1:97,83:31:181:0.461:2	0/1:2,134:31:136:0.985:2	0/1:93,97:31:190:0.511:2	0/1:83,79:32:162:0.488:2	./.	0/1:89,81:33:170:0.476:2	./.	0/1:0,177:32:177:1.00:2
chr11	5344683	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,6:33:163:0.037:2	./.	./.	./.	./.
chr11	5344772	rs10742622	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,135:30:135:1.00:2	0/1:0,71:29:71:1.00:2	0/1:0,12:28:12:1.00:2	0/1:0,124:30:124:1.00:2	0/1:0,115:29:115:1.00:2	0/1:0,147:29:147:1.00:2	0/1:0,150:30:150:1.00:2	0/1:0,142:29:142:1.00:2	0/1:0,182:30:182:1.00:2	0/1:0,102:29:102:1.00:2	0/1:0,132:30:132:1.00:2
chr11	5344847	rs10768793	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:33:95:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,8:28:8:1.00:2	0/1:0,85:33:85:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,87:31:87:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,109:32:109:1.00:2	0/1:0,119:33:119:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,106:33:106:1.00:2
chr11	5344902	rs7937237	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,38:31:39:0.974:2	0/1:0,26:32:26:1.00:2	0/1:0,2:34:2:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,46:33:46:1.00:2
chr11	5345128	rs10837814	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,26:32:60:0.433:2	0/1:18,21:32:39:0.538:2	0/1:5,8:31:13:0.615:2	0/1:43,44:31:87:0.506:2	./.	0/1:52,34:31:86:0.395:2	0/1:40,19:31:59:0.322:2	0/1:0,63:31:64:1.00:2	0/1:33,35:33:68:0.515:2	0/1:0,61:31:61:1.00:2	./.
chr11	5345170	rs7952293	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,69:30:70:0.986:2	0/1:0,46:29:46:1.00:2	0/1:0,11:29:11:1.00:2	0/1:1,90:30:91:0.989:2	0/1:2,67:29:69:0.971:2	0/1:0,84:29:84:1.00:2	0/1:1,81:29:82:0.988:2	0/1:1,97:29:98:0.990:2	0/1:0,71:30:71:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,79:30:79:1.00:2
chr11	5345486	rs4910750	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,117:31:117:1.00:2	0/1:1,72:32:73:0.986:2	0/1:0,25:31:25:1.00:2	0/1:0,188:31:188:1.00:2	0/1:2,125:31:127:0.984:2	0/1:0,189:31:189:1.00:2	0/1:1,134:31:135:0.993:2	0/1:0,164:31:164:1.00:2	0/1:0,160:32:160:1.00:2	0/1:0,144:31:144:1.00:2	0/1:0,159:31:161:1.00:2
chr11	5363879	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:131,4:31:135:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr11	5364276	rs4910551	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:3,9:33:12:0.750:2	./.	0/1:6,10:31:16:0.625:2	./.	0/1:14,9:30:23:0.391:2	./.	./.	./.	0/1:6,6:34:12:0.500:2	0/1:24,9:31:33:0.273:2
chr11	5364450	rs11036912	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:9,5:32:14:0.357:2	0/1:3,3:32:6:0.500:2	./.	0/1:8,10:31:18:0.556:2	./.	0/1:6,8:31:14:0.571:2	./.	./.	./.	0/1:5,13:33:18:0.722:2	0/1:7,11:30:18:0.611:2
chr11	5364503	rs142870806	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,24:31:36:0.667:2	./.
chr11	5364742	rs11036913	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:34:10:0.500:2	0/1:8,4:30:12:0.333:2	./.	./.	0/1:0,14:33:14:1.00:2	0/1:6,4:32:10:0.400:2	0/1:7,4:34:11:0.364:2	0/1:0,10:33:10:1.00:2	0/1:0,9:32:9:1.00:2	0/1:10,4:29:14:0.286:2	0/1:8,4:31:12:0.333:2
chr11	5372751	rs4910755	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:30:9:0.444:2	0/1:69,42:30:111:0.378:2	./.	./.	./.	./.	./.	0/1:0,97:31:97:1.00:2	0/1:80,49:30:129:0.380:2
chr11	5372856	rs4910756	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,9:32:20:0.450:2	0/1:113,65:32:178:0.365:2	./.	./.	./.	./.	./.	0/1:0,156:32:156:1.00:2	0/1:89,91:33:180:0.506:2
chr11	5372863	rs10837882	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,78:31:174:0.453:2	./.	./.
chr11	5372881	rs77135024	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,64:32:162:0.395:2	0/1:67,45:32:112:0.402:2	./.	./.	./.	0/1:84,76:31:160:0.475:2	./.	./.	./.	./.	./.
chr11	5373006	rs7483122	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,5:32:17:0.294:2	0/1:74,46:31:120:0.383:2	./.	./.	./.	./.	./.	0/1:1,93:32:94:0.989:2	0/1:64,70:32:134:0.522:2
chr11	5373104	rs5006889	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,9:34:102:0.088:2	./.	./.	./.	./.	./.	0/1:3,19:32:22:0.864:2	0/1:93,14:29:108:0.131:2
chr11	5373111	rs7479477	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,8:30:11:0.727:2	0/1:90,6:30:96:0.063:2
chr11	5373114	rs5006888	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:98,83:31:182:0.459:2	0/1:58,39:30:97:0.402:2	./.	0/1:2,82:31:84:0.976:2	./.	0/1:64,78:30:142:0.549:2	0/1:76,68:31:144:0.472:2	./.	0/1:114,76:31:190:0.400:2	0/1:2,8:29:10:0.800:2	0/1:95,6:29:102:0.059:2
chr11	5373129	rs5006887	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,3:30:16:0.188:2	0/1:93,8:31:101:0.079:2	./.	./.	./.	./.	./.	0/1:3,14:30:17:0.824:2	0/1:104,17:32:121:0.140:2
chr11	5373170	rs5006886	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,8:31:21:0.381:2	0/1:93,33:32:126:0.262:2	./.	./.	./.	./.	./.	0/1:2,67:32:70:0.971:2	0/1:104,44:32:148:0.297:2
chr11	5373242	rs5006885	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,15:33:25:0.600:2	0/1:110,61:33:171:0.357:2	./.	./.	./.	./.	./.	0/1:1,75:32:76:0.987:2	0/1:118,49:31:167:0.293:2
chr11	5373251	rs5006884	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,17:30:25:0.680:2	0/1:110,55:31:165:0.333:2	./.	./.	./.	./.	./.	0/1:2,72:31:74:0.973:2	0/1:114,47:31:161:0.292:2
chr11	5373311	rs5006883	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,16:33:21:0.762:2	0/1:102,64:33:166:0.386:2	./.	./.	./.	./.	./.	0/1:2,115:32:117:0.983:2	0/1:116,52:32:168:0.310:2
chr11	5373334	rs5006882	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,16:32:22:0.727:2	0/1:94,77:32:171:0.450:2	./.	./.	./.	./.	./.	0/1:3,139:32:142:0.979:2	0/1:106,61:31:168:0.365:2
chr11	5373497	rs7106330	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,94:33:186:0.505:2	0/1:70,68:32:138:0.493:2	./.	./.	./.	0/1:108,90:33:198:0.455:2	./.	./.	./.	./.	./.
chr11	5373562	rs5024042	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,7:31:19:0.368:2	0/1:81,68:31:149:0.456:2	./.	./.	./.	./.	./.	0/1:0,119:32:119:1.00:2	0/1:82,68:32:150:0.453:2
chr11	5373646	rs5024041	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,20:32:51:0.392:2	0/1:11,13:33:24:0.542:2	0/1:4,4:31:8:0.500:2	0/1:0,43:32:43:1.00:2	./.	0/1:17,26:33:43:0.605:2	0/1:22,22:32:44:0.500:2	./.	0/1:27,27:34:54:0.500:2	0/1:0,29:33:29:1.00:2	0/1:30,30:33:60:0.500:2
chr11	5410934	rs1498467	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:33:67:1.00:2	0/1:0,43:33:43:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,77:33:77:1.00:2	0/1:0,63:33:63:1.00:2	0/1:66,35:32:101:0.347:2	0/1:0,66:33:66:1.00:2	0/1:1,86:33:87:0.989:2	0/1:1,70:34:71:0.986:2	0/1:0,53:33:53:1.00:2	0/1:1,65:34:66:0.985:2
chr11	5411014	rs185267413	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,53:29:139:0.381:2	./.	./.	./.	./.	./.	./.
chr11	5411031	rs1498468	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,106:32:107:0.991:2	0/1:0,75:32:75:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,123:32:123:1.00:2	0/1:0,124:32:124:1.00:2	0/1:78,75:32:153:0.490:2	0/1:1,135:32:136:0.993:2	0/1:0,144:32:144:1.00:2	0/1:1,118:33:119:0.992:2	0/1:0,121:32:121:1.00:2	0/1:1,114:32:115:0.991:2
chr11	5411239	rs1498469	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,108:31:110:0.982:2	0/1:0,36:32:36:1.00:2	0/1:0,7:30:7:1.00:2	0/1:1,129:32:130:0.992:2	0/1:0,146:31:146:1.00:2	0/1:77,51:32:128:0.398:2	0/1:0,162:32:162:1.00:2	0/1:0,150:32:150:1.00:2	0/1:0,129:32:129:1.00:2	0/1:0,93:31:93:1.00:2	0/1:0,95:31:95:1.00:2
chr11	5411395	rs9783355	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,136:32:139:0.986:2	0/1:0,50:32:50:1.00:2	0/1:0,8:32:8:1.00:2	0/1:1,141:31:142:0.993:2	0/1:1,86:31:87:0.989:2	0/1:69,76:30:145:0.524:2	0/1:3,114:31:117:0.974:2	0/1:2,155:32:157:0.987:2	0/1:1,112:32:113:0.991:2	0/1:0,109:32:109:1.00:2	0/1:1,108:31:109:0.991:2
chr11	5411398	rs2736531	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,72:28:146:0.493:2	./.	./.	./.	./.	0/1:63,58:30:121:0.479:2	0/1:1,108:29:109:0.991:2	0/1:55,59:29:114:0.518:2
chr11	5411579	rs10768906	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:30:70:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,69:29:69:1.00:2	0/1:0,46:28:46:1.00:2	0/1:43,32:28:77:0.427:2	0/1:1,59:28:60:0.983:2	0/1:0,58:30:58:1.00:2	0/1:1,84:31:85:0.988:2	0/1:0,63:30:63:1.00:2	0/1:1,67:30:70:0.985:2
chr11	5411580	rs10768907	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:32:72:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,46:32:46:1.00:2	0/1:43,33:31:76:0.434:2	0/1:1,59:32:60:0.983:2	0/1:0,58:32:58:1.00:2	0/1:0,85:34:85:1.00:2	0/1:0,64:32:64:1.00:2	0/1:1,70:32:71:0.986:2
chr11	5423868	rs2647583	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,20:32:64:0.313:2	./.	./.	0/1:12,18:30:30:0.600:2	./.	./.	./.	./.
chr11	5423931	rs2736526	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,54:33:108:0.500:2	./.	./.	0/1:52,52:32:104:0.500:2	./.	./.	./.	./.
chr11	5424050	rs1909262	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,4:32:13:0.308:2	0/1:67,57:31:124:0.460:2	./.	./.	./.	./.	0/1:72,69:32:143:0.489:2	0/1:1,107:31:108:0.991:2	0/1:56,43:32:99:0.434:2
chr11	5424125	rs1909261	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,23:30:53:0.442:2	./.	./.	0/1:27,28:30:55:0.509:2	./.	./.	./.	./.
chr11	5424170	rs2647582	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,38:31:81:0.469:2	./.	./.	0/1:34,26:31:60:0.433:2	./.	./.	./.	./.
chr11	5424232	rs1909260	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,46:30:102:0.451:2	./.	./.	0/1:64,44:31:108:0.407:2	./.	./.	./.	./.
chr11	5424430	rs7929412	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,19:31:42:0.452:2	0/1:119,79:32:198:0.399:2	./.	./.	./.	./.	./.	0/1:1,183:32:184:0.995:2	0/1:111,83:32:194:0.428:2
chr11	5424504	rs872163	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,31:28:134:0.231:2	./.	./.	0/1:123,18:29:141:0.128:2	./.	./.	./.	./.
chr11	5424507	rs872164	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,31:31:135:0.230:2	./.	./.	0/1:128,18:30:146:0.123:2	./.	./.	./.	./.
chr11	5424532	rs872165	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,44:29:138:0.319:2	./.	./.	0/1:118,43:29:161:0.267:2	./.	./.	./.	./.
chr11	5424552	rs872166	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,48:30:147:0.327:2	./.	./.	0/1:109,54:29:163:0.331:2	./.	./.	./.	./.
chr11	5424701	rs16930511	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,81:35:165:0.491:2	./.	./.
chr11	5443442	rs2736590	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,7:31:10:0.700:2	0/1:57,62:32:119:0.521:2	./.	./.	./.	./.	0/1:48,35:32:83:0.422:2	0/1:0,71:32:71:1.00:2	0/1:58,51:32:109:0.468:2
chr11	5443700	rs2736588	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,8:32:19:0.421:2	0/1:77,56:31:133:0.421:2	./.	./.	./.	./.	0/1:77,64:32:141:0.454:2	0/1:0,107:32:107:1.00:2	0/1:82,48:32:130:0.369:2
chr11	5443739	rs2736587	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,7:34:17:0.412:2	0/1:76,54:32:130:0.415:2	./.	./.	./.	./.	0/1:70,70:33:140:0.500:2	0/1:1,104:33:105:0.990:2	0/1:85,57:33:142:0.401:2
chr11	5443867	rs10838092	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,16:30:39:0.410:2	0/1:127,61:31:188:0.324:2	./.	./.	./.	./.	0/1:102,72:33:174:0.414:2	0/1:1,159:31:160:0.994:2	0/1:96,67:32:164:0.411:2
chr11	5443887	rs10838093	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,13:28:33:0.394:2	0/1:117,61:29:179:0.343:2	./.	./.	./.	./.	0/1:83,64:29:147:0.435:2	0/1:1,130:29:131:0.992:2	0/1:97,63:29:160:0.394:2
chr11	5443893	rs10838094	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,13:29:31:0.419:2	0/1:115,60:29:175:0.343:2	./.	./.	./.	./.	0/1:81,67:31:148:0.453:2	0/1:2,128:30:130:0.985:2	0/1:96,65:31:161:0.404:2
chr11	5443963	rs10838095	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,6:30:22:0.273:2	0/1:120,70:30:190:0.368:2	./.	./.	./.	./.	0/1:102,89:31:192:0.466:2	0/1:2,166:30:168:0.988:2	0/1:104,84:29:188:0.447:2
chr11	5443992	rs111420940	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,84:32:198:0.424:2	./.	./.	./.
chr11	5444061	rs2736586	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,13:32:37:0.351:2	0/1:105,78:32:183:0.426:2	./.	./.	./.	./.	0/1:100,89:33:189:0.471:2	0/1:1,154:32:155:0.994:2	0/1:103,89:33:192:0.464:2
chr11	5444136	rs2647574	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,7:30:19:0.368:2	0/1:93,63:31:156:0.404:2	./.	./.	./.	./.	0/1:80,60:31:140:0.429:2	0/1:0,110:31:111:1.00:2	0/1:80,73:31:154:0.477:2
chr11	5444150	rs118011081	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,59:31:125:0.472:2	0/1:47,32:31:79:0.405:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	5444353	rs2647573	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:32:3:1.00:2	0/1:38,25:33:63:0.397:2	./.	./.	./.	./.	0/1:50,20:34:70:0.286:2	0/1:0,37:32:38:1.00:2	0/1:17,31:32:48:0.646:2
chr11	5461834	rs77336780	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,22:29:45:0.489:2	./.	0/1:35,42:29:77:0.545:2	./.	./.
chr11	5461861	rs76233016	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,27:33:64:0.422:2	0/1:18,23:32:41:0.561:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	5461991	rs1498486	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,86:32:87:0.989:2	0/1:0,40:31:40:1.00:2	0/1:1,4:30:5:0.800:2	./.	0/1:0,150:31:150:1.00:2	0/1:54,65:31:119:0.546:2	0/1:75,83:32:158:0.525:2	0/1:6,139:31:145:0.959:2	0/1:83,58:32:142:0.411:2	./.	0/1:58,62:32:120:0.517:2
chr11	5462085	rs11037444	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,5:31:12:0.417:2	0/1:0,90:32:90:1.00:2	./.	./.	./.	./.	./.	0/1:0,71:32:71:1.00:2	0/1:66,54:31:120:0.450:2
chr11	5462125	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,7:32:76:0.092:2	./.
chr11	5462255	rs11037445	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,3:32:9:0.333:2	0/1:0,74:33:74:1.00:2	./.	./.	./.	./.	./.	0/1:0,69:34:69:1.00:2	0/1:46,50:34:96:0.521:2
chr11	5462374	rs16930982	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,48:31:92:0.522:2	./.	./.	./.	./.	./.	./.	./.
chr11	5462702	rs16930998	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,12:32:20:0.600:2	./.	./.	./.	./.	./.	./.	./.
chr11	5474838	rs2030094	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,43:30:43:1.00:2	0/1:2,29:31:31:0.935:2	0/1:0,5:31:5:1.00:2	./.	0/1:1,83:30:84:0.988:2	./.	0/1:37,37:31:74:0.500:2	0/1:41,40:30:81:0.494:2	0/1:31,30:31:61:0.492:2	./.	0/1:53,32:32:85:0.376:2
chr11	5475118	rs12577167	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,73:32:153:0.477:2	./.	0/1:0,173:32:173:1.00:2	0/1:86,103:33:189:0.545:2	0/1:100,86:32:186:0.462:2	0/1:93,98:34:191:0.513:2	./.	./.
chr11	5475170	rs16931292	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,12:32:24:0.500:2	./.	0/1:1,106:32:107:0.991:2	./.	0/1:79,52:33:131:0.397:2	./.	./.	./.	0/1:73,77:32:151:0.513:2
chr11	5475505	rs75620804	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,72:32:161:0.447:2	./.	./.	./.
chr11	5475506	rs11037502	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,9:29:23:0.391:2	./.	0/1:2,170:31:173:0.988:2	./.	0/1:124,65:31:189:0.344:2	./.	./.	./.	0/1:90,84:32:174:0.483:2
chr11	5475597	rs11037503	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:1,50:31:51:0.980:2	0/1:0,37:30:37:1.00:2	0/1:4,5:31:9:0.556:2	./.	./.	./.	./.	0/1:34,28:30:62:0.452:2	0/1:25,27:32:52:0.519:2	./.	./.
chr11	5510284	rs417425	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,155:31:155:1.00:2	0/1:0,90:30:90:1.00:2	0/1:0,21:30:21:1.00:2	0/1:2,156:30:158:0.987:2	0/1:0,140:30:141:1.00:2	0/1:3,150:29:153:0.980:2	0/1:0,151:30:151:1.00:2	0/1:0,169:30:169:1.00:2	0/1:1,173:32:174:0.994:2	0/1:78,93:30:171:0.544:2	0/1:0,175:31:175:1.00:2
chr11	5510341	rs404280	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,127:30:127:1.00:2	0/1:2,60:30:62:0.968:2	0/1:0,15:29:15:1.00:2	0/1:98,65:30:163:0.399:2	0/1:2,112:29:114:0.982:2	0/1:0,118:29:118:1.00:2	0/1:3,121:30:124:0.976:2	0/1:92,42:29:134:0.313:2	0/1:109,59:31:168:0.351:2	./.	0/1:75,57:30:132:0.432:2
chr11	5510497	rs2467219	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,98:30:98:1.00:2	0/1:0,59:29:59:1.00:2	0/1:0,21:30:21:1.00:2	0/1:1,109:30:110:0.991:2	0/1:0,178:30:178:1.00:2	0/1:0,142:30:142:1.00:2	0/1:0,187:30:187:1.00:2	0/1:0,150:29:150:1.00:2	0/1:0,129:31:129:1.00:2	0/1:88,48:30:136:0.353:2	0/1:0,98:31:98:1.00:2
chr11	5510598	rs7950082	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,44:31:97:0.454:2	./.	./.	./.	./.	./.
chr11	5510626	rs444878	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:31:39:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,59:32:59:1.00:2	0/1:1,82:31:83:0.988:2	0/1:0,74:32:74:1.00:2	0/1:0,63:32:64:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,65:33:65:1.00:2	0/1:26,15:31:41:0.366:2	0/1:0,53:31:53:1.00:2
chr11	5510688	rs7101919	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,40:31:40:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,5:32:5:1.00:2	./.	./.	./.	./.	./.	0/1:30,22:33:52:0.423:2	./.	./.
chr11	5528918	rs2227271	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,58:32:58:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,4:25:4:1.00:2	./.	./.	0/1:43,20:32:63:0.317:2	0/1:52,39:31:91:0.429:2	./.	0/1:35,33:33:68:0.485:2	./.	0/1:40,22:32:62:0.355:2
chr11	5529139	rs2234456	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,38:31:38:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,5:31:5:1.00:2	./.	./.	0/1:40,33:31:73:0.452:2	0/1:43,42:30:85:0.494:2	./.	0/1:43,32:31:75:0.427:2	./.	0/1:30,39:31:69:0.565:2
chr11	5529152	rs2234455	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,41:28:72:0.569:2	./.	./.	./.	./.	./.	0/1:39,30:28:69:0.435:2	./.
chr11	5529163	rs140594143	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,50:32:110:0.459:2	./.	./.	./.	./.	./.	./.
chr11	5529865	rs186434	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:32:62:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,84:31:84:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,52:31:52:1.00:2
chr11	5529920	rs2234451	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,15:32:29:0.517:2
chr11	5530818	rs114824484	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,44:29:105:0.419:2	./.	./.	./.
chr11	5536309	rs12223282	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,36:32:99:0.364:2
chr11	5536415	rs10769023	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,19:30:19:1.00:2	./.	./.	./.	0/1:111,88:32:199:0.442:2	0/1:97,101:31:198:0.510:2	0/1:110,86:32:196:0.439:2	./.	./.
chr11	5536537	rs393044	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,180:33:180:1.00:2	0/1:0,128:32:128:1.00:2	0/1:0,30:31:30:1.00:2	0/1:1,190:32:191:0.995:2	0/1:0,152:31:152:1.00:2	0/1:0,174:32:174:1.00:2	0/1:0,175:32:175:1.00:2	0/1:0,187:32:187:1.00:2	0/1:0,183:33:183:1.00:2	0/1:0,166:32:166:1.00:2	0/1:0,185:32:186:1.00:2
chr11	5536848	rs2017433	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,76:31:76:1.00:2	0/1:0,47:32:47:1.00:2	./.	0/1:0,73:31:73:1.00:2	0/1:2,76:31:78:0.974:2	0/1:0,83:31:83:1.00:2	0/1:34,39:32:73:0.534:2	0/1:55,58:31:113:0.513:2	0/1:55,42:33:97:0.433:2	0/1:0,64:32:64:1.00:2	0/1:0,102:31:102:1.00:2
chr11	5536852	rs2017434	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:32:9:1.00:2	./.	./.	./.	0/1:46,31:31:77:0.403:2	0/1:61,55:32:116:0.474:2	0/1:41,54:33:95:0.568:2	./.	./.
chr11	5537045	rs872751	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:30:6:1.00:2	./.	./.	./.	0/1:34,38:31:72:0.528:2	0/1:49,34:30:83:0.410:2	0/1:43,39:31:82:0.476:2	./.	./.
chr11	5537147	rs148278465	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,51:32:105:0.486:2
chr11	5537161	rs2047456	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:29:4:1.00:2	./.	./.	./.	0/1:54,69:28:123:0.561:2	0/1:52,46:28:99:0.469:2	0/1:50,61:28:111:0.550:2	./.	./.
chr11	5537266	rs150539325	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,87:29:190:0.458:2
chr11	5537780	rs1809862	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:30:11:1.00:2	./.	./.	./.	0/1:78,78:32:156:0.500:2	0/1:80,76:32:156:0.487:2	0/1:100,65:32:165:0.394:2	./.	./.
chr11	5566030	rs1995158	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,78:30:78:1.00:2	0/1:0,60:29:60:1.00:2	0/1:0,4:31:4:1.00:2	0/1:68,54:31:122:0.443:2	0/1:53,39:28:92:0.424:2	0/1:0,92:30:92:1.00:2	0/1:0,104:30:104:1.00:2	0/1:1,95:29:96:0.990:2	0/1:1,101:30:102:0.990:2	./.	0/1:0,100:30:100:1.00:2
chr11	5566051	rs1995157	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:29:5:1.00:2	./.	0/1:69,42:30:111:0.378:2	0/1:53,41:31:94:0.436:2	0/1:48,53:30:101:0.525:2	0/1:1,97:31:98:0.990:2	0/1:0,87:32:87:1.00:2	./.	0/1:0,108:31:108:1.00:2
chr11	5566112	rs1995156	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,15:33:15:1.00:2	./.	0/1:102,60:32:162:0.370:2	0/1:66,48:32:114:0.421:2	0/1:97,85:33:182:0.467:2	0/1:2,147:33:149:0.987:2	0/1:5,105:33:110:0.955:2	./.	0/1:0,138:33:138:1.00:2
chr11	5566365	rs1566275	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:29:70:1.00:2	0/1:1,52:28:53:0.981:2	0/1:0,7:30:7:1.00:2	0/1:43,41:30:84:0.488:2	0/1:52,28:29:80:0.350:2	0/1:2,81:29:83:0.976:2	0/1:0,84:29:84:1.00:2	0/1:1,78:29:79:0.987:2	0/1:0,116:29:116:1.00:2	./.	0/1:0,103:29:103:1.00:2
chr11	5566472	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:31:134:0.030:2	./.	./.	./.
chr11	5566489	rs10769054	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,16:30:16:1.00:2	./.	0/1:76,62:30:138:0.449:2	0/1:62,64:30:126:0.508:2	0/1:71,62:30:133:0.466:2	0/1:3,156:30:159:0.981:2	0/1:1,135:31:136:0.993:2	./.	0/1:2,119:30:121:0.983:2
chr11	5602275	rs1077126	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:109,85:30:195:0.438:2	0/1:63,52:29:115:0.452:2	./.	0/1:106,90:29:196:0.459:2	0/1:112,75:29:187:0.401:2	0/1:0,184:29:184:1.00:2	0/1:102,89:29:191:0.466:2	0/1:102,92:29:194:0.474:2	0/1:99,89:30:188:0.473:2	./.	0/1:97,77:29:174:0.443:2
chr11	5602438	rs2341432	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,154:31:156:0.994:2	0/1:2,118:31:120:0.983:2	./.	0/1:102,86:31:188:0.457:2	0/1:0,190:31:190:1.00:2	0/1:2,186:31:188:0.989:2	0/1:0,179:31:179:1.00:2	0/1:113,79:31:193:0.411:2	0/1:115,77:32:192:0.401:2	./.	0/1:111,72:31:184:0.393:2
chr11	5602605	rs2341433	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,39:29:84:0.470:2	0/1:34,27:31:61:0.443:2	./.	0/1:57,44:30:101:0.436:2	0/1:55,47:29:102:0.461:2	0/1:0,119:30:119:1.00:2	0/1:51,63:29:114:0.553:2	0/1:63,71:30:134:0.530:2	0/1:47,45:30:92:0.489:2	./.	0/1:49,37:31:86:0.430:2
chr11	5602615	rs2341434	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,79:29:80:0.988:2	0/1:1,51:29:52:0.981:2	./.	0/1:58,40:30:99:0.408:2	0/1:1,97:29:98:0.990:2	0/1:1,120:29:121:0.992:2	0/1:1,103:29:104:0.990:2	0/1:62,69:29:131:0.527:2	0/1:45,45:30:90:0.500:2	./.	0/1:53,42:29:95:0.442:2
chr11	5602679	rs892336	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,145:32:147:0.986:2	0/1:0,78:32:78:1.00:2	./.	0/1:68,59:33:127:0.465:2	0/1:0,151:31:151:1.00:2	0/1:2,176:32:179:0.989:2	0/1:0,189:32:189:1.00:2	0/1:92,94:32:186:0.505:2	0/1:85,72:33:157:0.459:2	./.	0/1:81,71:32:152:0.467:2
chr11	5602790	rs2163946	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,147:32:150:0.980:2	0/1:2,72:32:74:0.973:2	./.	0/1:89,69:32:158:0.437:2	0/1:0,109:31:109:1.00:2	0/1:3,154:32:157:0.981:2	0/1:0,141:32:141:1.00:2	0/1:85,72:32:157:0.459:2	0/1:73,73:32:146:0.500:2	./.	0/1:86,65:32:151:0.430:2
chr11	5602928	rs10838375	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,161:32:162:0.994:2	0/1:0,123:32:123:1.00:2	./.	0/1:101,70:33:172:0.409:2	0/1:0,177:32:177:1.00:2	0/1:2,166:32:168:0.988:2	0/1:0,165:32:165:1.00:2	0/1:97,91:32:188:0.484:2	0/1:99,82:33:181:0.453:2	./.	0/1:77,77:31:154:0.500:2
chr11	5602929	rs74053516	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,72:30:151:0.477:2
chr11	5602968	rs10769086	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,150:31:150:1.00:2	0/1:0,97:31:97:1.00:2	0/1:0,36:31:36:1.00:2	0/1:106,78:31:184:0.424:2	0/1:0,136:30:136:1.00:2	0/1:1,151:30:153:0.993:2	0/1:1,160:31:161:0.994:2	0/1:0,179:31:179:1.00:2	0/1:0,164:31:164:1.00:2	./.	0/1:0,144:31:144:1.00:2
chr11	5624872	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:33:189:0.021:2	./.	./.	./.	./.
chr11	5625847	rs3751006	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:21,33:32:55:0.611:2	0/1:12,9:32:21:0.429:2	0/1:2,7:32:9:0.778:2	./.	./.	0/1:0,66:32:66:1.00:2	0/1:24,20:32:44:0.455:2	0/1:0,37:32:37:1.00:2	./.	0/1:23,31:32:54:0.574:2	0/1:0,83:33:83:1.00:2
chr11	5629607	rs10769121	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,20:31:34:0.588:2	./.	./.	./.	./.	0/1:4,180:31:184:0.978:2	0/1:178,4:32:182:0.022:2	0/1:99,87:31:186:0.468:2	0/1:91,93:31:184:0.505:2
chr11	5632018	rs61756355	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,45:33:87:0.517:2	./.	./.
chr11	5632212	rs10769124	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,65:31:137:0.474:2	0/1:44,40:31:84:0.476:2	0/1:0,19:31:19:1.00:2	0/1:66,67:31:133:0.504:2	./.	0/1:0,148:31:148:1.00:2	0/1:71,83:31:154:0.539:2	0/1:0,141:31:141:1.00:2	0/1:63,78:32:141:0.553:2	0/1:0,146:32:146:1.00:2	0/1:0,151:32:151:1.00:2
chr11	5655956	rs185832700	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,9:29:40:0.225:2	./.	./.	./.	./.	./.	./.	./.
chr11	5663688	rs6578670	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,29:31:61:0.475:2	./.	./.	./.
chr11	5664427	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:122,4:31:126:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr11	5664684	rs16933844	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,91:34:168:0.542:2	./.	./.
chr11	5664831	rs3740998	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:87,74:32:161:0.460:2	0/1:59,59:30:118:0.500:2	0/1:11,13:30:24:0.542:2	./.	0/1:185,4:32:189:0.021:2	0/1:0,184:31:185:1.00:2	./.	0/1:191,7:30:198:0.035:2	./.	./.	0/1:96,90:31:186:0.484:2
chr11	5686266	rs28381981	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,5:29:16:0.313:2	./.	./.	0/1:6,16:33:22:0.727:2
chr11	5700340	rs3740995	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:32:82:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,69:32:69:1.00:2	0/1:59,32:33:91:0.352:2	0/1:49,43:33:92:0.467:2	0/1:57,71:32:128:0.555:2	0/1:0,112:33:112:1.00:2	0/1:0,51:32:51:1.00:2	0/1:62,46:33:108:0.426:2
chr11	5701001	rs10838525	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,44:32:78:0.564:2	0/1:9,21:33:30:0.700:2	./.	0/1:0,64:32:64:1.00:2	0/1:1,72:32:73:0.986:2	0/1:37,27:31:64:0.422:2	./.	./.	0/1:0,66:33:66:1.00:2	./.	./.
chr11	5701067	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:126,4:32:130:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr11	5701074	rs11601507	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:76,39:31:115:0.339:2	0/1:37,14:32:51:0.275:2	./.	./.	./.	./.	./.	0/1:71,49:31:120:0.408:2	./.	./.	0/1:73,47:31:121:0.392:2
chr11	5701079	rs56348930	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,58:32:135:0.430:2	./.	./.	./.	./.	./.	./.	./.
chr11	5701281	rs3740996	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,68:31:140:0.486:2	./.	0/1:99,88:31:187:0.471:2	./.	./.	./.
chr11	5717762	rs10838543	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,13:28:30:0.433:2	0/1:18,12:29:30:0.400:2	./.	0/1:0,34:27:34:1.00:2	0/1:0,20:28:20:1.00:2	0/1:0,29:28:29:1.00:2	./.	0/1:1,39:29:40:0.975:2	0/1:2,43:28:45:0.956:2	./.	0/1:20,30:29:50:0.600:2
chr11	5718517	rs7935564	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,26:32:27:0.963:2	0/1:0,25:31:25:1.00:2	./.	0/1:0,22:30:22:1.00:2	0/1:0,13:31:13:1.00:2	0/1:1,21:31:22:0.955:2	./.	0/1:0,22:31:22:1.00:2	0/1:0,19:33:19:1.00:2	0/1:7,14:31:21:0.667:2	0/1:34,29:30:63:0.460:2
chr11	5719667	rs2291842	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,8:31:13:0.615:2	0/1:90,70:32:160:0.438:2	./.	0/1:93,92:32:185:0.497:2	0/1:107,86:32:193:0.446:2	./.	0/1:80,78:33:159:0.494:2	./.	./.
chr11	5719750	rs1063303	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,59:28:124:0.476:2	0/1:41,25:29:66:0.379:2	0/1:17,3:28:20:0.150:2	0/1:65,66:29:131:0.504:2	0/1:74,58:28:132:0.439:2	0/1:0,135:28:135:1.00:2	0/1:83,50:28:133:0.376:2	0/1:0,147:28:147:1.00:2	0/1:85,61:29:146:0.418:2	0/1:0,114:29:114:1.00:2	0/1:71,65:28:136:0.478:2
chr11	5727823	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:30:99:0.040:2	./.
chr11	5730294	rs61735276	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:31:10:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	5757785	rs12792180	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:29,23:32:52:0.442:2	0/1:18,11:31:29:0.379:2	./.	0/1:27,21:29:48:0.438:2	./.	0/1:24,27:30:52:0.529:2	./.	./.	0/1:33,15:33:48:0.313:2	./.	0/1:36,39:30:75:0.520:2
chr11	5757973	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:181,4:32:185:0.022:2	./.	./.	./.	./.	./.	./.
chr11	5758062	rs7397032	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:76,60:30:136:0.441:2	0/1:45,39:28:84:0.464:2	0/1:16,5:31:21:0.238:2	0/1:85,66:29:151:0.437:2	0/1:2,102:29:104:0.981:2	0/1:92,71:30:163:0.436:2	0/1:1,104:29:105:0.990:2	0/1:3,126:29:129:0.977:2	0/1:101,80:31:181:0.442:2	0/1:0,140:29:140:1.00:2	0/1:87,72:30:159:0.453:2
chr11	5758118	rs7396766	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,155:33:155:1.00:2	0/1:0,81:32:81:1.00:2	0/1:10,5:31:15:0.333:2	0/1:0,127:32:127:1.00:2	0/1:0,132:31:132:1.00:2	0/1:1,158:32:159:0.994:2	0/1:0,122:32:122:1.00:2	0/1:3,156:32:159:0.981:2	0/1:0,160:33:160:1.00:2	0/1:0,125:32:125:1.00:2	0/1:1,173:33:174:0.994:2
chr11	5758386	rs62621167	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,36:30:79:0.462:2	./.	./.	0/1:53,36:31:89:0.404:2	./.	./.	./.
chr11	5758646	rs4486660	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,35:28:79:0.443:2	./.	./.	./.	./.
chr11	5776287	rs7936512	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,168:31:168:1.00:2	0/1:1,82:31:83:0.988:2	0/1:0,23:31:23:1.00:2	0/1:0,164:31:164:1.00:2	0/1:0,178:31:178:1.00:2	0/1:0,174:30:174:1.00:2	0/1:0,161:31:162:1.00:2	0/1:1,165:31:166:0.994:2	0/1:0,169:32:169:1.00:2	0/1:0,160:31:160:1.00:2	0/1:0,182:31:183:1.00:2
chr11	5776470	rs7394584	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,123:29:123:1.00:2	0/1:0,69:28:69:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,118:28:118:1.00:2	0/1:0,118:28:118:1.00:2	0/1:0,133:28:134:1.00:2	0/1:0,93:28:93:1.00:2	0/1:0,123:28:123:1.00:2	0/1:0,145:29:145:1.00:2	0/1:0,93:27:93:1.00:2	0/1:0,100:28:100:1.00:2
chr11	5776479	rs75108386	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,9:33:13:0.692:2	./.	./.	./.	0/1:70,49:33:119:0.412:2	./.	./.	./.	./.
chr11	5776484	rs4910844	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,131:33:134:0.978:2	0/1:1,68:32:70:0.986:2	./.	0/1:85,59:32:144:0.410:2	0/1:70,84:32:154:0.545:2	./.	0/1:55,70:32:125:0.560:2	0/1:75,80:32:155:0.516:2	./.	./.	0/1:63,58:33:121:0.479:2
chr11	5776595	rs12363178	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,40:33:42:0.952:2	./.	./.	./.	0/1:103,73:33:176:0.415:2	./.	./.	./.	./.
chr11	5776623	rs7396938	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,163:31:163:1.00:2	0/1:0,137:31:137:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,180:31:180:1.00:2	0/1:0,186:31:186:1.00:2	0/1:0,182:30:182:1.00:2	0/1:0,193:31:193:1.00:2	0/1:0,187:31:188:1.00:2	0/1:1,180:32:181:0.994:2	0/1:1,151:31:152:0.993:2	0/1:0,149:31:149:1.00:2
chr11	5799468	rs12360738	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,20:29:20:1.00:2	./.	./.	./.	0/1:0,60:31:60:1.00:2	./.	./.	./.	./.
chr11	5809230	rs12794769	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,31:31:31:1.00:2	./.	./.	./.	0/1:6,117:31:123:0.951:2	./.	./.	./.	./.
chr11	5809308	rs7934670	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:29:34:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,125:31:125:1.00:2	0/1:0,100:31:100:1.00:2	0/1:0,178:31:178:1.00:2	0/1:0,113:31:113:1.00:2	0/1:2,146:31:148:0.986:2	0/1:0,169:32:169:1.00:2	0/1:0,155:32:155:1.00:2	0/1:0,103:32:104:1.00:2
chr11	5809477	rs10838637	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,132:33:133:0.992:2	0/1:0,97:33:97:1.00:2	./.	0/1:100,79:33:179:0.441:2	0/1:90,98:33:188:0.521:2	./.	0/1:98,99:33:197:0.503:2	0/1:96,84:33:180:0.467:2	./.	./.	0/1:95,87:33:182:0.478:2
chr11	5809548	rs7948009	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,22:31:22:1.00:2	0/1:62,78:31:140:0.557:2	0/1:66,72:30:138:0.522:2	0/1:2,146:31:150:0.986:2	0/1:79,69:31:148:0.466:2	0/1:77,77:31:155:0.500:2	0/1:0,144:32:145:1.00:2	0/1:0,104:31:104:1.00:2	0/1:79,59:31:138:0.428:2
chr11	5809673	rs10769224	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,78:31:78:1.00:2	0/1:0,44:31:44:1.00:2	./.	0/1:59,46:30:105:0.438:2	0/1:39,34:29:73:0.466:2	./.	0/1:54,55:30:109:0.505:2	0/1:61,47:30:108:0.435:2	./.	./.	0/1:56,47:31:103:0.456:2
chr11	5809746	rs10742787	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,71:31:74:0.959:2	0/1:0,48:30:48:1.00:2	./.	0/1:61,48:31:109:0.440:2	0/1:35,32:30:67:0.478:2	./.	0/1:26,48:31:74:0.649:2	0/1:51,33:31:84:0.393:2	./.	./.	0/1:51,34:31:85:0.400:2
chr11	5809811	rs12365487	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,13:30:13:1.00:2	./.	./.	./.	0/1:88,53:30:141:0.376:2	./.	./.	./.	./.
chr11	5841856	rs4758435	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,147:32:147:1.00:2	0/1:0,83:32:83:1.00:2	./.	0/1:0,187:31:187:1.00:2	0/1:0,163:31:163:1.00:2	0/1:1,177:31:178:0.994:2	0/1:110,87:31:197:0.442:2	0/1:2,184:32:186:0.989:2	0/1:0,178:32:178:1.00:2	0/1:0,155:32:155:1.00:2	0/1:0,161:31:161:1.00:2
chr11	5842310	rs8181529	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,78:33:194:0.402:2	0/1:106,85:33:191:0.445:2	0/1:0,189:32:189:1.00:2	./.	0/1:117,80:32:197:0.406:2	0/1:0,181:33:181:1.00:2	0/1:2,182:32:185:0.989:2	0/1:113,78:32:191:0.408:2
chr11	5842356	rs8181512	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,78:30:194:0.402:2	0/1:115,81:30:196:0.413:2	0/1:0,190:30:190:1.00:2	./.	0/1:103,90:30:193:0.466:2	0/1:0,181:30:181:1.00:2	0/1:1,183:30:184:0.995:2	0/1:110,77:30:189:0.412:2
chr11	5862222	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:31:147:0.027:2	./.	./.	./.
chr11	5862532	rs10742809	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,42:33:70:0.600:2	0/1:23,18:32:41:0.439:2	./.	0/1:47,48:33:96:0.505:2	0/1:47,41:32:88:0.466:2	0/1:45,40:32:85:0.471:2	0/1:46,39:33:85:0.459:2	0/1:47,60:33:107:0.561:2	./.	./.	0/1:54,50:33:104:0.481:2
chr11	5862653	rs4357719	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:68,63:29:131:0.481:2	0/1:33,48:30:81:0.593:2	./.	0/1:75,62:29:137:0.453:2	0/1:77,59:29:136:0.434:2	0/1:69,96:30:165:0.582:2	0/1:75,80:30:155:0.516:2	0/1:56,96:30:152:0.632:2	./.	./.	0/1:76,72:30:148:0.486:2
chr11	5862731	rs10838719	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:76,68:31:144:0.472:2	0/1:42,40:30:82:0.488:2	./.	0/1:3,166:30:169:0.982:2	0/1:1,149:30:150:0.993:2	0/1:92,77:31:169:0.456:2	0/1:108,62:31:170:0.365:2	0/1:5,168:30:173:0.971:2	0/1:96,86:31:182:0.473:2	0/1:77,83:30:161:0.519:2	0/1:0,174:30:174:1.00:2
chr11	5862780	rs4362172	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:66,72:32:138:0.522:2	0/1:34,31:32:65:0.477:2	./.	0/1:69,64:32:133:0.481:2	0/1:75,60:32:135:0.444:2	0/1:73,75:32:148:0.507:2	0/1:95,51:32:146:0.349:2	0/1:87,85:32:172:0.494:2	./.	./.	0/1:84,81:33:165:0.491:2
chr11	5862845	rs4592451	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,53:32:89:0.596:2	0/1:21,20:31:41:0.488:2	./.	0/1:38,43:32:81:0.531:2	0/1:33,34:31:67:0.507:2	0/1:40,49:32:89:0.551:2	0/1:39,40:31:79:0.506:2	0/1:49,37:32:86:0.430:2	./.	./.	0/1:54,41:32:95:0.432:2
chr11	5862937	rs4495918	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,32:31:65:0.492:2	0/1:29,21:32:50:0.420:2	./.	0/1:60,40:31:100:0.400:2	0/1:38,35:31:73:0.479:2	0/1:54,42:31:96:0.438:2	0/1:40,51:32:91:0.560:2	0/1:43,54:32:97:0.557:2	./.	./.	0/1:52,32:31:84:0.381:2
chr11	5862984	rs10769272	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:47,47:32:94:0.500:2	0/1:30,28:32:58:0.483:2	./.	0/1:52,47:33:99:0.475:2	0/1:38,36:32:74:0.486:2	0/1:55,46:32:101:0.455:2	0/1:41,50:32:91:0.549:2	0/1:52,56:31:108:0.519:2	./.	./.	0/1:52,35:33:87:0.402:2
chr11	5863013	rs4362173	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:48,54:33:102:0.529:2	0/1:29,32:32:61:0.525:2	./.	0/1:54,61:33:115:0.530:2	0/1:38,37:31:75:0.493:2	0/1:62,52:32:114:0.456:2	0/1:41,57:32:98:0.582:2	0/1:64,63:32:127:0.496:2	./.	./.	0/1:63,60:32:123:0.488:2
chr11	5863113	rs10742810	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,32:32:67:0.478:2	0/1:20,15:32:35:0.429:2	./.	0/1:64,42:31:106:0.396:2	0/1:29,35:31:64:0.547:2	0/1:50,32:31:82:0.390:2	0/1:48,40:31:88:0.455:2	0/1:66,46:30:112:0.411:2	./.	./.	0/1:56,45:31:101:0.446:2
chr11	5877979	rs12419602	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,32:32:76:0.421:2	0/1:25,13:32:38:0.342:2	0/1:7,8:32:15:0.533:2	0/1:33,42:31:75:0.560:2	0/1:53,34:31:87:0.391:2	0/1:24,26:31:50:0.520:2	./.	0/1:49,40:31:89:0.449:2	0/1:36,39:33:75:0.520:2	0/1:0,53:32:53:1.00:2	0/1:56,45:31:101:0.446:2
chr11	5878447	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:98,5:27:103:0.049:2	./.	./.	0/1:157,6:28:163:0.037:2	0/1:124,8:29:132:0.061:2	0/1:137,7:26:144:0.049:2	0/1:163,6:27:169:0.036:2	./.	./.	./.	./.
chr11	5878458	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:98,6:31:104:0.058:2	./.	./.	0/1:173,10:30:183:0.055:2	0/1:146,16:31:162:0.099:2	0/1:146,12:30:159:0.076:2	0/1:172,11:31:183:0.060:2	0/1:155,8:32:163:0.049:2	./.	./.	./.
chr11	5878576	rs139706671	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:105,6:30:111:0.054:2	./.	./.	0/1:114,9:31:123:0.073:2	0/1:108,7:31:115:0.061:2	0/1:133,8:30:141:0.057:2	0/1:123,4:31:127:0.031:2	0/1:116,4:32:120:0.033:2	./.	./.	./.
chr11	5878588	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:106,5:33:111:0.045:2	./.	./.	./.	./.	./.	./.
chr11	5878589	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,5:32:110:0.045:2	./.	./.	./.	./.	./.	./.
chr11	5878840	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:33:103:0.039:2	./.	./.	./.	./.	./.
chr11	5878890	rs371540443	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:30:105:0.038:2	./.	./.	./.	./.	./.
chr11	5878900	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:31:76:0.053:2	./.
chr11	5906048	rs4758168	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,186:32:186:1.00:2	0/1:0,110:31:110:1.00:2	0/1:14,10:32:24:0.417:2	0/1:0,191:32:191:1.00:2	0/1:1,179:31:180:0.994:2	0/1:0,197:31:197:1.00:2	0/1:96,100:31:196:0.510:2	0/1:0,191:31:191:1.00:2	0/1:83,113:32:196:0.577:2	0/1:0,175:32:175:1.00:2	0/1:0,186:32:187:1.00:2
chr11	5906073	rs4757986	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,183:32:183:1.00:2	0/1:0,151:31:151:1.00:2	0/1:15,11:31:26:0.423:2	0/1:0,192:31:192:1.00:2	0/1:0,186:31:186:1.00:2	0/1:0,185:31:185:1.00:2	0/1:102,93:31:195:0.477:2	0/1:0,189:32:189:1.00:2	0/1:81,114:32:195:0.585:2	0/1:1,189:31:190:0.995:2	0/1:1,182:32:183:0.995:2
chr11	5906143	rs11823809	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:97,76:33:173:0.439:2	0/1:88,107:32:195:0.549:2	0/1:41,26:32:67:0.388:2	0/1:93,92:33:185:0.497:2	0/1:85,101:33:186:0.543:2	0/1:87,106:32:193:0.549:2	./.	0/1:100,94:32:194:0.485:2	0/1:101,79:34:180:0.439:2	0/1:0,153:33:153:1.00:2	0/1:95,88:32:183:0.481:2
chr11	5906192	rs1453435	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,165:30:166:0.994:2	0/1:2,149:29:151:0.987:2	0/1:36,21:30:57:0.368:2	0/1:1,168:29:169:0.994:2	0/1:0,171:29:171:1.00:2	0/1:1,160:28:161:0.994:2	0/1:117,69:30:186:0.371:2	0/1:0,173:29:173:1.00:2	0/1:101,74:30:175:0.423:2	0/1:0,159:29:159:1.00:2	0/1:0,154:29:154:1.00:2
chr11	5906203	rs11823828	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:94,78:32:172:0.453:2	0/1:59,98:32:157:0.624:2	0/1:31,18:33:49:0.367:2	0/1:92,96:33:188:0.511:2	0/1:70,88:33:158:0.557:2	0/1:84,96:33:180:0.533:2	./.	0/1:87,91:32:178:0.511:2	0/1:97,68:33:166:0.412:2	0/1:0,151:33:151:1.00:2	0/1:83,85:33:168:0.506:2
chr11	5906205	rs4757987	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:84,86:31:170:0.506:2	0/1:103,55:31:158:0.348:2	./.	0/1:102,88:30:191:0.463:2	0/1:94,66:29:160:0.413:2	0/1:101,79:29:181:0.439:2	0/1:109,60:30:169:0.355:2	0/1:101,83:31:185:0.451:2	./.	./.	0/1:96,79:31:176:0.451:2
chr11	5906291	rs11823842	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:86,90:32:176:0.511:2	0/1:51,60:32:111:0.541:2	0/1:9,6:32:15:0.400:2	0/1:66,88:32:154:0.571:2	0/1:61,72:31:133:0.541:2	0/1:87,81:32:168:0.482:2	./.	0/1:73,81:32:154:0.526:2	0/1:101,77:33:178:0.433:2	0/1:0,159:31:159:1.00:2	0/1:70,84:32:154:0.545:2
chr11	5968728	rs1840178	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,43:28:87:0.500:2	0/1:28,32:29:60:0.533:2	0/1:9,7:29:16:0.438:2	0/1:68,54:29:122:0.443:2	./.	0/1:81,59:28:140:0.421:2	0/1:76,59:30:135:0.437:2	0/1:66,71:30:137:0.518:2	0/1:58,44:30:102:0.431:2	0/1:0,77:29:77:1.00:2	0/1:48,56:28:104:0.538:2
chr11	5968816	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:171,6:30:177:0.034:2	./.	./.	./.	./.	./.	./.
chr11	5969185	rs10769378	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,55:32:107:0.514:2	0/1:71,61:32:132:0.462:2	0/1:76,52:33:128:0.406:2	0/1:40,44:32:84:0.524:2	./.
chr11	5989223	rs61730422	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,24:32:53:0.453:2	0/1:33,35:32:68:0.515:2
chr11	5989293	rs7113548	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,30:33:60:0.500:2	0/1:26,17:32:43:0.395:2	./.	0/1:0,62:31:62:1.00:2	0/1:1,45:31:46:0.978:2	0/1:57,37:31:94:0.394:2	./.	0/1:40,33:32:73:0.452:2	./.	./.	./.
chr11	5989415	rs7114672	C	A,T	.	PASS	AC=2,5;AF=0.095,0.238;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0/2:31:87:0.575:2	0/2:32:51:0.551:2	0/2:31:15:0.333:2	0/2:30:81:0.963:2	./.	0/2:31:125:0.464:2	0/1:30:100:0.434:2	./.	0/1:32:119:0.586:2	./.	./.
chr11	6007200	rs182469194	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,41:31:110:0.373:2	./.	./.	./.	./.
chr11	6007272	rs4237768	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:30:88:1.00:2	0/1:0,65:28:65:1.00:2	0/1:0,20:29:20:1.00:2	0/1:1,105:30:106:0.991:2	0/1:2,142:29:144:0.986:2	0/1:0,130:29:130:1.00:2	0/1:79,70:28:149:0.470:2	0/1:0,148:29:148:1.00:2	0/1:0,124:30:124:1.00:2	0/1:61,48:29:109:0.440:2	0/1:52,60:29:112:0.536:2
chr11	6007396	rs61732631	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,57:31:141:0.404:2	./.	./.	./.	./.
chr11	6007613	rs4354673	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,121:32:124:0.984:2	0/1:0,59:32:59:1.00:2	0/1:0,20:32:20:1.00:2	0/1:2,119:31:121:0.983:2	0/1:1,132:31:133:0.992:2	0/1:0,148:31:148:1.00:2	0/1:81,89:31:170:0.524:2	0/1:3,161:31:164:0.982:2	0/1:5,120:32:125:0.960:2	0/1:54,43:32:97:0.443:2	0/1:57,51:31:108:0.472:2
chr11	6007680	rs4436524	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,87:31:88:0.989:2	0/1:0,56:29:56:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,104:30:104:1.00:2	0/1:0,139:29:139:1.00:2	0/1:0,106:30:106:1.00:2	0/1:62,56:29:118:0.475:2	0/1:4,120:29:124:0.968:2	0/1:0,134:30:134:1.00:2	0/1:59,39:30:98:0.398:2	0/1:45,49:30:96:0.521:2
chr11	6007743	rs4436525	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:30:56:1.00:2	0/1:1,44:29:45:0.978:2	0/1:0,6:29:6:1.00:2	0/1:1,72:29:73:0.986:2	0/1:0,105:29:105:1.00:2	0/1:0,69:29:69:1.00:2	0/1:53,52:29:105:0.495:2	0/1:0,103:29:103:1.00:2	0/1:0,85:31:85:1.00:2	0/1:47,26:29:73:0.356:2	0/1:46,46:28:92:0.500:2
chr11	6007772	rs61750896	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,52:30:114:0.456:2	./.	./.	./.	./.
chr11	6007899	rs4501959	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,67:30:124:0.540:2	0/1:53,52:32:105:0.495:2	0/1:59,35:32:94:0.372:2	./.	./.
chr11	6023291	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,5:34:112:0.045:2
chr11	6023302	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,5:33:117:0.043:2
chr11	6023581	rs11040248	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,20:33:42:0.476:2	0/1:19,10:31:29:0.345:2	./.	0/1:20,21:32:41:0.512:2	0/1:0,25:31:25:1.00:2	0/1:26,16:31:42:0.381:2	./.	0/1:25,31:32:56:0.554:2	./.	./.	0/1:23,23:32:46:0.500:2
chr11	6023640	rs11040249	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,48:30:83:0.578:2	0/1:28,14:30:43:0.333:2	./.	0/1:42,45:31:87:0.517:2	0/1:1,64:30:65:0.985:2	0/1:54,37:30:91:0.407:2	./.	0/1:48,54:30:102:0.529:2	./.	./.	0/1:39,44:30:83:0.530:2
chr11	6023818	rs10839221	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:50,48:31:98:0.490:2	0/1:33,22:31:55:0.400:2	./.	0/1:34,47:31:81:0.580:2	0/1:0,84:31:84:1.00:2	0/1:48,69:31:117:0.590:2	./.	0/1:59,58:31:117:0.496:2	./.	./.	0/1:50,57:31:107:0.533:2
chr11	6024044	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,3:31:15:0.200:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	6048056	rs11040335	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,68:29:69:0.986:2	0/1:0,53:29:53:1.00:2	0/1:5,4:31:9:0.444:2	0/1:51,60:29:111:0.541:2	0/1:50,47:30:97:0.485:2	0/1:68,48:28:116:0.414:2	0/1:44,37:30:81:0.457:2	0/1:2,93:30:95:0.979:2	./.	./.	./.
chr11	6048654	rs145879154	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:31:12:0.583:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	6129837	rs1462983	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,140:31:140:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,27:31:27:1.00:2	./.	0/1:122,73:30:195:0.374:2	0/1:109,63:31:172:0.366:2	0/1:1,157:31:158:0.994:2	0/1:109,63:31:172:0.366:2	0/1:110,77:32:189:0.412:2	0/1:96,86:31:182:0.473:2	0/1:107,74:31:181:0.409:2
chr11	6190828	rs190537696	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:32:76:0.053:2	./.	./.	./.
chr11	6190994	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,7:17:49:0.143:2	./.	./.	0/1:34,5:21:39:0.128:2
chr11	6221169	rs10839531	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,52:30:113:0.460:2	0/1:27,27:29:54:0.500:2	0/1:0,12:29:12:1.00:2	0/1:0,114:29:114:1.00:2	0/1:0,105:29:105:1.00:2	0/1:78,61:29:139:0.439:2	0/1:93,83:30:176:0.472:2	./.	0/1:3,101:30:104:0.971:2	0/1:4,84:29:88:0.955:2	0/1:0,112:29:112:1.00:2
chr11	6221214	rs11040799	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,46:33:105:0.438:2	0/1:29,30:33:59:0.508:2	0/1:0,15:32:15:1.00:2	0/1:0,122:33:122:1.00:2	0/1:61,57:32:118:0.483:2	0/1:80,63:32:143:0.441:2	0/1:105,89:33:194:0.459:2	./.	0/1:0,93:33:93:1.00:2	0/1:3,93:33:96:0.969:2	0/1:0,111:33:111:1.00:2
chr11	6221249	rs325609	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,106:30:189:0.561:2	./.	./.	./.
chr11	6231731	rs10769671	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,9:30:25:0.360:2	0/1:12,14:31:26:0.538:2	0/1:0,2:30:2:1.00:2	0/1:0,28:31:28:1.00:2	0/1:7,11:29:18:0.611:2	0/1:0,24:30:24:1.00:2	0/1:12,14:32:26:0.538:2	0/1:19,6:32:25:0.240:2	0/1:0,24:32:24:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,26:30:26:1.00:2
chr11	6235656	rs117940741	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,21:32:39:0.538:2	./.	./.
chr11	6238680	rs140870715	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,13:32:30:0.433:2	./.	./.
chr11	6238844	rs145525932	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,54:30:120:0.450:2	./.	./.	./.
chr11	6238960	rs3750943	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:7,3:31:10:0.300:2	./.	./.	./.	./.	./.	0/1:2,8:33:10:0.800:2	./.	0/1:5,5:32:10:0.500:2	./.	./.
chr11	6239139	rs11040809	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,4:32:12:0.333:2	0/1:5,6:31:11:0.545:2	./.	0/1:15,7:32:22:0.318:2	0/1:9,19:30:28:0.679:2	./.	0/1:9,6:29:15:0.400:2	0/1:20,15:31:35:0.429:2	./.	./.	./.
chr11	6239344	rs3750944	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:14,13:30:28:0.481:2	0/1:9,5:31:14:0.357:2	0/1:0,4:32:4:1.00:2	./.	./.	0/1:0,21:29:21:1.00:2	0/1:15,20:31:35:0.571:2	0/1:0,24:31:24:1.00:2	0/1:17,14:33:31:0.452:2	0/1:7,18:30:25:0.720:2	0/1:15,13:32:28:0.464:2
chr11	6243804	rs3750945	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:32:63:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,44:32:44:1.00:2	./.	0/1:0,59:33:59:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,62:32:62:1.00:2
chr11	6262715	rs7129498	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,82:31:154:0.532:2	./.	./.	./.
chr11	6262735	rs373497401	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,53:32:101:0.525:2	./.	./.	./.	./.	./.
chr11	6262810	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,24:28:66:0.369:2	./.	./.	./.	./.	./.	./.	./.
chr11	6265242	rs61746967	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,25:31:58:0.431:2	./.	./.	./.	./.	./.
chr11	6340525	rs12570	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,13:30:13:1.00:2	0/1:0,3:31:3:1.00:2	./.	0/1:0,5:32:5:1.00:2	0/1:0,6:31:6:1.00:2	./.	./.	0/1:3,3:33:6:0.500:2	0/1:0,4:34:4:1.00:2	0/1:0,6:32:6:1.00:2	0/1:1,2:33:3:0.667:2
chr11	6340706	rs1051992	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,11:27:11:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,2:30:2:1.00:2	0/1:1,14:28:15:0.933:2	./.	0/1:19,10:25:29:0.345:2	0/1:10,4:26:14:0.286:2	./.	./.	0/1:0,9:30:9:1.00:2	0/1:10,9:29:19:0.474:2
chr11	6341365	rs11544764	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	./.	./.
chr11	6341684	rs2682123	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,9:26:10:1.00:2	0/1:0,20:27:20:1.00:2	./.	0/1:0,18:26:18:1.00:2	0/1:0,55:29:55:1.00:2	0/1:0,24:27:24:1.00:2	0/1:15,16:28:31:0.516:2	0/1:0,30:27:30:1.00:2	0/1:0,32:27:32:1.00:2	0/1:1,16:28:17:0.941:2	0/1:0,12:25:12:1.00:2
chr11	6411836	rs199836262	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,8:31:26:0.308:2	./.	./.	./.
chr11	6411935	rs1050228	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:28:9:0.333:2	0/1:4,4:32:8:0.500:2	./.	0/1:2,3:33:5:0.600:2	./.	0/1:0,4:28:4:1.00:2	./.	./.
chr11	6411941	rs78250081	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	6412931	rs7951904	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	./.	./.	./.	./.	./.
chr11	6413366	rs72896268	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,35:31:72:0.486:2	./.	./.	./.	./.	./.
chr11	6415463	rs1050239	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:22,25:33:47:0.532:2	0/1:19,24:33:43:0.558:2	./.	0/1:27,38:32:65:0.585:2	./.	0/1:26,24:32:50:0.480:2	0/1:30,30:31:60:0.500:2	0/1:1,55:32:56:0.982:2	./.	0/1:0,50:33:50:1.00:2	0/1:28,33:33:61:0.541:2
chr11	6416769	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,4:28:89:0.045:2	./.	./.	./.	./.	./.	./.	./.
chr11	6417164	rs200270654	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,13:13:106:0.123:2	./.	./.	./.	./.	./.
chr11	6423932	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:99,4:32:103:0.039:2	./.	./.	./.	./.	./.	./.
chr11	6424610	rs1800423	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,9:30:20:0.450:2	./.	./.	./.	./.	./.
chr11	6432089	rs150119080	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,9:31:19:0.474:2
chr11	6477831	rs10606	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,16:32:28:0.593:2	0/1:11,7:32:18:0.389:2	./.	./.	./.	0/1:25,33:29:58:0.569:2	0/1:27,34:31:61:0.557:2	0/1:18,33:32:51:0.647:2	./.	./.	0/1:3,17:28:20:0.850:2
chr11	6478619	rs16913748	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,28:31:48:0.583:2	0/1:19,10:29:29:0.345:2	./.	./.	./.	0/1:36,16:30:52:0.308:2	0/1:32,33:29:65:0.508:2	0/1:37,45:30:82:0.549:2	./.	./.	0/1:23,24:31:47:0.511:2
chr11	6502727	rs11604726	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,11:33:37:0.306:2	0/1:16,14:32:30:0.467:2	./.	./.	./.	0/1:41,40:32:81:0.494:2	0/1:42,34:32:76:0.447:2	0/1:40,34:32:74:0.459:2	./.	./.	0/1:28,26:31:54:0.481:2
chr11	6502780	rs11555935	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,19:31:44:0.432:2	0/1:21,20:32:41:0.488:2	./.	./.	./.	0/1:51,47:32:98:0.480:2	0/1:54,46:32:100:0.460:2	0/1:43,36:31:79:0.456:2	./.	./.	0/1:41,29:32:70:0.414:2
chr11	6519642	rs11604149	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:56,41:31:97:0.423:2	0/1:28,28:32:56:0.500:2	./.	0/1:72,61:32:133:0.459:2	0/1:78,65:31:143:0.455:2	0/1:0,130:31:130:1.00:2	0/1:98,68:31:166:0.410:2	0/1:78,74:31:153:0.487:2	./.	0/1:0,100:31:100:1.00:2	0/1:63,47:31:110:0.427:2
chr11	6520015	rs11040899	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,37:32:80:0.463:2	0/1:23,23:31:46:0.500:2	./.	0/1:48,36:30:84:0.429:2	0/1:58,47:31:107:0.448:2	0/1:0,80:30:80:1.00:2	0/1:60,56:31:116:0.483:2	0/1:51,62:32:113:0.549:2	./.	0/1:0,56:31:56:1.00:2	0/1:32,26:31:58:0.448:2
chr11	6520164	rs2555158	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,27:31:66:0.409:2	0/1:20,24:32:44:0.545:2	./.	0/1:44,31:32:75:0.413:2	0/1:0,88:32:88:1.00:2	0/1:1,76:31:77:0.987:2	0/1:41,44:32:85:0.518:2	0/1:2,85:32:87:0.977:2	./.	0/1:0,49:32:49:1.00:2	0/1:38,27:33:65:0.415:2
chr11	6524072	rs11605196	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,22:31:37:0.595:2	0/1:24,25:29:49:0.510:2	./.	./.	./.	0/1:37,22:29:59:0.373:2	0/1:45,28:30:73:0.384:2	0/1:62,28:29:90:0.311:2	./.	./.	0/1:45,34:31:79:0.430:2
chr11	6530278	rs10839568	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,77:32:181:0.425:2	0/1:78,60:31:138:0.435:2	0/1:111,69:31:180:0.383:2	./.	./.	./.	0/1:0,122:32:122:1.00:2	./.
chr11	6532519	rs4758423	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,63:29:146:0.432:2	0/1:90,76:29:166:0.458:2	0/1:82,76:29:158:0.481:2	./.	./.	./.	0/1:0,100:30:101:1.00:2	./.
chr11	6541225	rs11603869	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,28:32:56:0.500:2	0/1:18,10:33:28:0.357:2	./.	./.	./.	0/1:32,24:32:56:0.429:2	0/1:27,22:32:49:0.449:2	0/1:23,25:32:48:0.521:2	./.	./.	0/1:39,42:32:81:0.519:2
chr11	6549779	rs4633449	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:32:45:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,8:32:8:1.00:2	0/1:45,25:33:70:0.357:2	./.	0/1:31,23:31:54:0.426:2	0/1:0,64:32:64:1.00:2	0/1:49,38:31:88:0.437:2	0/1:0,48:33:48:1.00:2	./.	0/1:0,75:32:75:1.00:2
chr11	6549995	rs7480644	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:33:34:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,6:31:6:1.00:2	0/1:22,24:31:46:0.522:2	./.	0/1:26,32:32:58:0.552:2	0/1:0,25:33:25:1.00:2	0/1:13,22:31:35:0.629:2	0/1:0,43:32:44:1.00:2	./.	0/1:0,43:32:43:1.00:2
chr11	6550004	rs2344828	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:30:31:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,6:29:6:1.00:2	0/1:19,20:29:39:0.513:2	./.	0/1:23,28:31:51:0.549:2	0/1:0,19:30:19:1.00:2	0/1:12,17:29:29:0.586:2	0/1:0,36:32:38:1.00:2	./.	0/1:0,41:30:41:1.00:2
chr11	6550309	rs2344829	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,13:32:13:1.00:2	0/1:82,82:32:164:0.500:2	./.	0/1:64,71:31:135:0.526:2	0/1:1,151:32:152:0.993:2	0/1:73,97:32:170:0.571:2	0/1:0,127:33:127:1.00:2	./.	0/1:0,132:32:133:1.00:2
chr11	6554941	rs4282961	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,69:31:114:0.605:2	0/1:0,89:30:89:1.00:2	0/1:47,36:30:84:0.434:2	./.	0/1:61,64:31:125:0.512:2	0/1:45,40:31:85:0.471:2	0/1:0,68:31:68:1.00:2	./.
chr11	6555244	rs180918289	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,27:31:66:0.409:2
chr11	6555365	rs7103810	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:31:65:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,5:32:5:1.00:2	0/1:1,68:33:69:0.986:2	0/1:0,87:32:87:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,111:33:111:1.00:2	0/1:55,47:32:102:0.461:2	0/1:50,47:34:97:0.485:2	0/1:0,76:32:76:1.00:2	0/1:0,42:31:42:1.00:2
chr11	6560454	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,4:33:65:0.062:2	./.	./.	./.	./.	./.	./.	./.
chr11	6561270	rs10839577	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,19:31:55:0.345:2	0/1:1,38:30:39:0.974:2	0/1:22,31:30:53:0.585:2	./.	0/1:47,43:30:90:0.478:2	0/1:28,32:31:60:0.533:2	0/1:0,37:30:37:1.00:2	./.
chr11	6567096	rs61735751	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,40:31:42:0.976:2	./.
chr11	6567591	rs145119715	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,81:31:169:0.479:2	./.	./.	./.	./.	./.
chr11	6567857	rs16915277	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,34:32:71:0.479:2	./.	./.	0/1:39,46:32:85:0.541:2	./.	./.	./.
chr11	6568041	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:31:136:0.029:2	./.	./.	./.	./.	./.
chr11	6568213	rs58186801	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,9:25:27:0.333:2	./.	0/1:10,11:29:21:0.524:2	./.	./.	./.	0/1:1,17:28:18:0.944:2	./.
chr11	6568290	rs11825154	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,30:32:66:0.455:2	./.	./.	0/1:27,16:32:43:0.372:2	./.	./.	./.
chr11	6569896	rs11606889	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	./.	./.	0/1:21,22:32:43:0.512:2	./.	./.	./.	0/1:21,18:31:39:0.462:2
chr11	6578004	rs11600179	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,44:31:104:0.423:2	0/1:53,48:32:101:0.475:2	./.	./.
chr11	6578084	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:116,4:30:121:0.033:2	./.	./.	./.	./.	./.	./.
chr11	6579106	rs11040920	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,7:27:18:0.389:2	./.	./.	0/1:7,16:30:23:0.696:2	0/1:0,13:29:13:1.00:2	./.
chr11	6579354	rs16915382	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,54:32:134:0.403:2	./.	./.	0/1:94,74:33:168:0.440:2	0/1:72,47:33:119:0.395:2	./.	./.
chr11	6580495	rs72901756	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,69:32:141:0.489:2	./.	./.
chr11	6585007	rs11040923	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,7:33:16:0.438:2	0/1:8,6:32:14:0.429:2	./.	0/1:0,21:32:21:1.00:2	0/1:19,13:32:32:0.406:2	./.	0/1:19,6:31:25:0.240:2	./.	./.	./.	0/1:0,14:32:14:1.00:2
chr11	6585670	rs16915423	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,69:32:145:0.476:2	./.	./.
chr11	6585838	rs11825255	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,14:29:26:0.538:2	./.	./.	0/1:18,15:31:33:0.455:2	0/1:16,20:31:36:0.556:2	./.	./.
chr11	6587847	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:33:127:0.031:2	./.	./.	./.	./.	./.
chr11	6588228	rs10769699	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:66,44:32:110:0.400:2	0/1:43,47:32:90:0.522:2	0/1:6,9:31:15:0.600:2	./.	./.	0/1:2,160:32:162:0.988:2	0/1:87,68:32:155:0.439:2	0/1:115,82:32:197:0.416:2	0/1:92,87:33:179:0.486:2	0/1:0,126:33:126:1.00:2	./.
chr11	6588553	rs56313830	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,32:30:87:0.368:2	./.	./.	0/1:48,42:31:90:0.467:2	0/1:43,28:31:72:0.394:2	./.	./.
chr11	6591520	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:31:40:0.100:2	./.	./.
chr11	6592015	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,3:31:40:0.075:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	6622574	rs142606127	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,32:32:55:0.593:2	./.	./.	./.	./.	./.	./.	./.
chr11	6622714	rs2288283	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:31:51:1.00:2	0/1:0,25:30:25:1.00:2	0/1:7,3:29:10:0.300:2	0/1:2,54:30:56:0.964:2	0/1:43,11:30:54:0.204:2	0/1:1,58:30:59:0.983:2	0/1:0,42:30:42:1.00:2	0/1:64,33:29:98:0.340:2	0/1:55,25:31:80:0.313:2	0/1:0,61:30:61:1.00:2	0/1:0,69:31:69:1.00:2
chr11	6623433	rs146487650	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,16:31:17:0.941:2	./.
chr11	6629651	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,7:30:182:0.039:2
chr11	6629665	rs1043388	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,48:33:116:0.414:2	0/1:38,34:32:72:0.472:2	./.	./.	./.	0/1:80,95:31:175:0.543:2	./.	./.	./.	./.	0/1:73,80:32:154:0.523:2
chr11	6630833	rs1043390	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,55:32:140:0.393:2	0/1:35,41:31:76:0.539:2	./.	./.	./.	0/1:114,72:31:186:0.387:2	./.	./.	./.	./.	0/1:88,85:32:173:0.491:2
chr11	6631016	rs2292195	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.	0/1:74,52:32:126:0.413:2	./.	0/1:102,74:32:176:0.420:2	./.	0/1:56,71:32:127:0.559:2	./.	./.
chr11	6632450	rs12451	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,9:32:12:0.750:2	./.	0/1:47,39:32:86:0.453:2	./.	0/1:59,39:32:98:0.398:2	./.	0/1:87,52:34:139:0.374:2	./.	./.
chr11	6636106	rs1128396	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,25:29:36:0.714:2	./.	./.	./.	./.	0/1:29,14:29:43:0.326:2
chr11	6637577	rs35706972	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,28:33:53:0.528:2	./.
chr11	6643976	rs7122587	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,7:30:23:0.304:2	./.	./.	./.	0/1:19,9:32:28:0.321:2	./.	./.
chr11	6644427	rs35599968	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,23:29:52:0.442:2	0/1:9,6:28:15:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	6644600	rs72911011	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:30:6:0.667:2	./.	0/1:32,24:29:56:0.429:2	./.	./.	./.	0/1:19,18:32:37:0.486:2	./.	./.
chr11	6645439	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:31:150:0.027:2	./.	./.	./.
chr11	6645522	rs117140835	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,43:29:88:0.489:2	./.	./.	./.	./.	./.	./.	./.
chr11	6648424	rs4758443	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	0/1:103,80:31:183:0.437:2	0/1:82,68:31:150:0.453:2	./.	./.	0/1:70,52:31:122:0.426:2	./.	0/1:40,46:31:86:0.535:2
chr11	6649874	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,66:31:108:0.611:2	./.	./.
chr11	6652618	rs2659871	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,7:34:15:0.467:2	./.	0/1:46,43:32:90:0.483:2	0/1:49,56:32:105:0.533:2	./.	./.	0/1:61,68:33:129:0.527:2	./.	0/1:61,57:33:118:0.483:2
chr11	6652976	rs138559226	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,87:32:157:0.554:2	./.	./.	./.	./.	./.
chr11	6653811	rs201160085	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,14:29:19:0.737:2	./.	./.	./.	./.	./.	./.
chr11	6655433	rs997263	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,5:31:14:0.357:2	./.	0/1:41,33:30:74:0.446:2	0/1:48,50:29:98:0.510:2	./.	./.	0/1:56,45:31:102:0.446:2	./.	0/1:53,38:30:91:0.418:2
chr11	6661068	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:92,4:32:96:0.042:2	./.	./.	./.	./.	./.	./.
chr11	6704051	rs16917042	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,40:32:90:0.444:2	./.	./.
chr11	6789294	rs7924459	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,6:32:21:0.286:2	./.	./.	0/1:110,88:32:198:0.444:2	./.	./.	0/1:116,77:33:193:0.399:2	./.	./.
chr11	6789445	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,5:30:166:0.030:2
chr11	6789452	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:32:163:0.025:2
chr11	6789929	rs11828782	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,100:33:103:0.971:2	0/1:1,51:32:52:0.981:2	./.	./.	0/1:6,97:32:103:0.942:2	0/1:64,47:32:111:0.423:2	0/1:2,92:32:94:0.979:2	0/1:83,59:33:142:0.415:2	./.	./.	0/1:72,47:31:119:0.395:2
chr11	6789961	rs199843483	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:120,6:29:126:0.048:2	./.	0/1:104,6:29:110:0.055:2	./.	./.	./.	./.
chr11	6790028	rs10839616	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:30:16:0.563:2	./.	./.	0/1:39,43:30:82:0.524:2	./.	./.	0/1:5,99:30:105:0.952:2	./.	./.
chr11	6790106	rs7102536	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,45:32:47:0.957:2	0/1:0,33:32:33:1.00:2	0/1:5,10:32:15:0.667:2	./.	0/1:0,69:32:69:1.00:2	0/1:2,57:32:59:0.966:2	0/1:0,89:33:89:1.00:2	0/1:31,33:33:64:0.516:2	0/1:0,58:33:58:1.00:2	./.	0/1:35,44:32:79:0.557:2
chr11	6806421	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:33:146:0.027:2	./.	./.	./.
chr11	6806496	rs11041022	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:68,52:31:120:0.433:2	0/1:45,40:30:85:0.471:2	./.	./.	0/1:6,125:29:131:0.954:2	0/1:77,68:30:145:0.469:2	0/1:12,137:30:149:0.919:2	0/1:82,75:29:158:0.478:2	./.	./.	./.
chr11	6806827	rs2659880	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:38,60:32:98:0.612:2	0/1:29,37:31:66:0.561:2	./.	./.	0/1:2,130:31:132:0.985:2	0/1:68,61:31:129:0.473:2	0/1:3,126:32:129:0.977:2	0/1:74,76:31:150:0.507:2	./.	./.	./.
chr11	6807163	rs2659879	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:75,49:32:124:0.395:2	0/1:40,31:32:71:0.437:2	./.	./.	0/1:2,89:31:91:0.978:2	0/1:72,64:32:136:0.471:2	0/1:4,67:32:71:0.944:2	0/1:105,49:32:154:0.318:2	./.	./.	./.
chr11	6816778	rs866347	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,123:32:123:1.00:2	0/1:2,68:32:72:0.971:2	0/1:0,16:32:16:1.00:2	0/1:1,185:31:186:0.995:2	0/1:0,129:30:129:1.00:2	0/1:0,142:31:142:1.00:2	0/1:3,147:31:150:0.980:2	0/1:2,169:31:171:0.988:2	0/1:2,185:32:187:0.989:2	0/1:0,182:31:182:1.00:2	0/1:0,164:31:164:1.00:2
chr11	6816843	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:34:172:0.023:2
chr11	6816875	rs7122644	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,14:32:21:0.667:2	./.	./.	0/1:76,66:31:143:0.465:2	./.	./.	0/1:1,159:32:160:0.994:2	./.	0/1:0,159:32:160:1.00:2
chr11	6867083	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:181,6:26:187:0.032:2	0/1:157,7:26:164:0.043:2	./.	0/1:165,26:28:191:0.136:2	./.	./.	./.	0/1:182,16:28:198:0.081:2	./.	0/1:175,23:29:198:0.116:2	./.
chr11	6867462	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:184,6:32:190:0.032:2	0/1:125,4:32:129:0.031:2	./.	0/1:179,10:32:190:0.053:2	./.	./.	./.	0/1:189,7:33:196:0.036:2	./.	0/1:181,16:32:197:0.081:2	./.
chr11	6867473	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:185,5:29:190:0.026:2	0/1:146,4:32:150:0.027:2	./.	0/1:177,16:32:193:0.083:2	./.	./.	./.	0/1:183,10:32:193:0.052:2	./.	0/1:179,19:31:198:0.096:2	./.
chr11	6867588	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:178,12:31:190:0.063:2	0/1:165,9:33:174:0.052:2	./.	0/1:174,14:31:188:0.074:2	./.	./.	./.	0/1:185,8:32:193:0.041:2	./.	0/1:178,10:33:188:0.053:2	./.
chr11	6891113	rs3930075	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:105,84:30:189:0.444:2	0/1:82,57:30:139:0.410:2	0/1:11,15:31:26:0.577:2	0/1:29,157:30:186:0.844:2	./.	./.	./.	0/1:132,64:30:196:0.327:2	./.	0/1:22,166:30:188:0.883:2	./.
chr11	6891385	rs2741764	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:53,59:28:112:0.527:2	0/1:42,33:30:75:0.440:2	./.	./.	0/1:3,121:28:124:0.976:2	0/1:61,77:29:138:0.558:2	0/1:1,111:28:112:0.991:2	0/1:77,78:29:155:0.503:2	./.	./.	./.
chr11	6891528	rs7117739	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,64:31:138:0.464:2	0/1:79,49:32:128:0.383:2	0/1:16,12:32:28:0.429:2	0/1:1,176:33:177:0.994:2	./.	./.	./.	0/1:107,82:32:189:0.434:2	./.	0/1:3,172:32:175:0.983:2	./.
chr11	6891605	rs10839631	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:100,70:30:170:0.412:2	0/1:91,54:29:145:0.372:2	0/1:11,11:31:22:0.500:2	0/1:3,185:31:188:0.984:2	./.	./.	./.	0/1:115,78:31:194:0.404:2	./.	0/1:3,155:31:158:0.981:2	./.
chr11	6891704	rs10839632	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,7:32:15:0.467:2	./.	./.	0/1:50,49:32:100:0.495:2	./.	./.	0/1:1,119:33:120:0.992:2	./.	0/1:5,110:32:115:0.957:2
chr11	6891758	rs7926083	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,57:30:108:0.528:2	0/1:32,26:28:58:0.448:2	0/1:10,4:28:14:0.286:2	0/1:2,124:30:126:0.984:2	./.	./.	./.	0/1:77,50:29:128:0.394:2	./.	0/1:0,100:29:100:1.00:2	./.
chr11	6898495	rs2595453	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,94:32:191:0.492:2	./.	0/1:100,94:33:194:0.485:2	0/1:113,78:33:191:0.408:2	./.	./.	./.
chr11	6898663	rs10839635	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,5:29:6:0.833:2	./.	./.	0/1:30,28:28:58:0.483:2	./.	./.	0/1:0,78:30:78:1.00:2	./.	0/1:0,55:31:55:1.00:2
chr11	6898789	rs140094304	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,35:33:63:0.556:2	./.	./.
chr11	6913127	rs2741804	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:42,35:29:77:0.455:2	0/1:21,21:29:42:0.500:2	./.	./.	0/1:0,60:28:60:1.00:2	0/1:24,42:29:66:0.636:2	0/1:2,74:28:76:0.974:2	0/1:46,35:28:81:0.432:2	./.	./.	./.
chr11	6913243	rs1965207	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,63:31:119:0.529:2	0/1:30,35:30:65:0.538:2	0/1:7,7:30:14:0.500:2	0/1:0,91:30:91:1.00:2	./.	./.	./.	0/1:78,92:29:170:0.541:2	./.	0/1:0,101:30:101:1.00:2	./.
chr11	6913244	rs1965208	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,118:30:118:1.00:2	0/1:0,64:30:64:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,91:29:91:1.00:2	0/1:0,143:32:143:1.00:2	0/1:2,141:32:143:0.986:2	0/1:0,168:33:168:1.00:2	0/1:0,165:31:165:1.00:2	0/1:0,134:33:134:1.00:2	0/1:0,100:29:100:1.00:2	0/1:0,142:32:142:1.00:2
chr11	6942409	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2
chr11	6942476	rs10839658	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,60:31:148:0.405:2	0/1:61,48:31:109:0.440:2	0/1:6,7:31:13:0.538:2	0/1:1,164:30:165:0.994:2	0/1:1,105:30:106:0.991:2	0/1:77,64:31:141:0.454:2	0/1:1,108:30:109:0.991:2	0/1:61,59:30:120:0.492:2	0/1:0,152:31:152:1.00:2	0/1:6,133:31:139:0.957:2	0/1:95,71:31:166:0.428:2
chr11	6942628	rs11605995	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:92,99:30:191:0.518:2	0/1:58,64:29:123:0.525:2	0/1:15,9:29:24:0.375:2	./.	./.	./.	./.	./.	./.	./.	0/1:104,87:30:192:0.455:2
chr11	6942695	rs12806437	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,93:31:191:0.487:2	./.	0/1:83,98:32:181:0.541:2	./.	./.	./.
chr11	6942726	rs10839659	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:109,72:30:181:0.398:2	0/1:66,54:29:120:0.450:2	0/1:8,8:29:16:0.500:2	0/1:107,85:29:192:0.443:2	0/1:3,165:29:168:0.982:2	0/1:93,85:29:178:0.478:2	0/1:2,181:30:183:0.989:2	0/1:106,89:29:195:0.456:2	0/1:1,186:30:187:0.995:2	0/1:97,62:30:159:0.390:2	./.
chr11	6942952	rs2035844	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:116,76:29:192:0.396:2	0/1:78,58:29:136:0.426:2	0/1:15,14:29:29:0.483:2	./.	./.	./.	./.	./.	./.	./.	0/1:86,106:29:192:0.552:2
chr11	6953858	rs11041108	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,17:32:32:0.531:2	0/1:11,8:32:19:0.421:2	./.	0/1:19,14:32:33:0.424:2	0/1:1,27:32:28:0.964:2	./.	0/1:14,10:32:24:0.417:2	./.	0/1:0,41:32:41:1.00:2	0/1:18,19:32:37:0.514:2	./.
chr11	6976988	rs2239731	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:31:28:1.00:2	0/1:0,18:32:18:1.00:2	0/1:3,6:31:9:0.667:2	0/1:32,22:31:54:0.407:2	0/1:0,23:31:23:1.00:2	0/1:25,13:30:38:0.342:2	0/1:12,7:31:19:0.368:2	0/1:33,20:30:53:0.377:2	0/1:0,30:32:30:1.00:2	0/1:0,30:32:30:1.00:2	0/1:53,26:32:79:0.329:2
chr11	6977175	rs2239730	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,8:32:21:0.381:2	./.	0/1:11,10:31:21:0.476:2	0/1:9,4:34:13:0.308:2	0/1:20,4:32:24:0.167:2	./.	./.	0/1:11,15:33:26:0.577:2
chr11	7022038	rs12575236	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,24:32:52:0.462:2	./.	0/1:14,29:32:44:0.674:2	0/1:16,12:32:28:0.429:2	./.	0/1:22,25:33:47:0.532:2	./.	./.
chr11	7022160	rs2857919	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:31:61:1.00:2	0/1:0,40:29:40:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,75:30:75:1.00:2	0/1:2,68:30:70:0.971:2	0/1:0,69:30:69:1.00:2	0/1:1,86:31:87:0.989:2	0/1:0,54:31:54:1.00:2	0/1:1,69:30:70:0.986:2
chr11	7022217	rs191766009	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,9:32:16:0.563:2	./.	./.	./.	./.
chr11	7022360	rs2239734	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,33:33:61:0.541:2	./.	0/1:35,18:33:53:0.340:2	./.	./.	0/1:27,27:33:54:0.500:2
chr11	7022531	rs1156525	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:2,58:32:60:0.967:2	0/1:0,32:32:32:1.00:2	./.	0/1:0,45:31:45:1.00:2	./.	0/1:21,31:30:52:0.596:2	0/1:0,27:31:27:1.00:2	0/1:18,13:30:31:0.419:2	0/1:27,34:32:61:0.557:2	0/1:21,25:31:46:0.543:2	./.
chr11	7022717	rs1156526	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,56:33:56:1.00:2	0/1:0,22:33:22:1.00:2	./.	0/1:0,34:32:34:1.00:2	./.	0/1:27,30:32:57:0.526:2	0/1:1,31:32:32:0.969:2	0/1:23,14:31:37:0.378:2	0/1:20,28:34:48:0.583:2	0/1:17,33:32:50:0.660:2	./.
chr11	7059960	rs12801277	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:33:60:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,55:34:55:1.00:2	0/1:0,41:32:42:1.00:2	0/1:0,54:33:54:1.00:2
chr11	7059981	rs61063081	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,26:31:27:0.963:2	./.	./.	./.	0/1:13,19:33:32:0.594:2	0/1:16,11:31:27:0.407:2	0/1:25,13:33:38:0.342:2
chr11	7063755	rs7123944	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:31:67:1.00:2	0/1:0,44:32:44:1.00:2	0/1:10,11:32:21:0.524:2	0/1:0,84:31:84:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,94:32:95:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,83:32:83:1.00:2
chr11	7063833	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,5:28:107:0.047:2
chr11	7063987	rs188283930	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,13:28:39:0.333:2	./.	./.	./.	./.
chr11	7064447	rs76670455	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	7071031	rs1552726	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,122:33:122:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,107:33:107:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,127:32:127:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,129:32:129:1.00:2	0/1:0,130:33:130:1.00:2	0/1:0,96:33:96:1.00:2	0/1:0,144:32:144:1.00:2
chr11	7079038	rs10839708	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:2,191:31:193:0.990:2	0/1:0,169:32:169:1.00:2	./.	0/1:3,184:31:187:0.984:2	./.	0/1:101,81:31:182:0.445:2	0/1:4,185:30:189:0.979:2	0/1:100,96:30:196:0.490:2	0/1:100,93:32:193:0.482:2	0/1:117,81:31:198:0.409:2	./.
chr11	7091569	rs17280682	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,35:31:37:0.946:2	./.	./.	./.	0/1:54,39:32:93:0.419:2	0/1:32,18:31:51:0.360:2	0/1:40,38:32:78:0.487:2
chr11	7110363	rs4758158	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:3,54:32:57:0.947:2	0/1:0,34:31:34:1.00:2	./.	0/1:43,50:31:93:0.538:2	./.	./.	0/1:38,46:32:84:0.548:2	./.	./.	0/1:37,28:32:65:0.431:2	./.
chr11	7110368	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:30:67:0.061:2	./.
chr11	7110548	rs11041170	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	0/1:0,54:30:54:1.00:2	./.	./.	./.	0/1:23,26:32:49:0.531:2	0/1:15,21:32:36:0.583:2	0/1:20,26:31:46:0.565:2
chr11	7324475	rs4412741	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,67:31:68:1.00:2	0/1:0,67:33:67:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,68:31:68:1.00:2
chr11	7324584	rs78477754	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,7:30:26:0.269:2	0/1:15,17:31:32:0.531:2	./.	./.	./.	0/1:15,5:32:20:0.250:2	./.	./.
chr11	7439264	rs34058874	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,21:32:21:1.00:2	0/1:68,35:33:103:0.340:2	0/1:52,33:32:85:0.388:2	0/1:60,60:32:120:0.500:2	./.	./.	./.	./.	./.
chr11	7441737	rs11041372	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,26:29:66:0.394:2	0/1:23,24:30:47:0.511:2	0/1:38,25:30:63:0.397:2	./.	./.	./.	./.	./.
chr11	7507182	rs118163706	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,60:33:150:0.400:2	./.	./.	./.	./.	./.
chr11	7509566	rs12805648	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,34:29:67:0.507:2	./.	./.	./.	0/1:26,29:31:55:0.527:2	0/1:43,40:30:83:0.482:2
chr11	7652163	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,6:33:16:0.375:2	0/1:6,6:31:12:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	7656809	rs11041490	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,165:32:166:0.994:2	./.	./.	./.	./.	./.
chr11	7662732	rs4643071	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:28:57:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,7:26:7:1.00:2	0/1:71,45:29:117:0.388:2	0/1:3,89:28:92:0.967:2	./.	0/1:0,121:29:121:1.00:2	0/1:0,141:29:142:1.00:2	0/1:59,58:30:117:0.496:2	./.	0/1:50,30:29:81:0.375:2
chr11	7662806	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.	./.	./.
chr11	7669736	rs149157151	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,77:31:141:0.550:2	./.	./.	./.	./.	./.	./.
chr11	7670440	rs4758209	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:30:76:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,105:30:105:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,82:29:82:1.00:2	0/1:0,84:30:84:1.00:2	0/1:0,107:29:107:1.00:2	0/1:0,142:30:142:1.00:2	0/1:0,98:30:98:1.00:2	0/1:0,145:29:145:1.00:2
chr11	7673015	rs5864	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,17:31:39:0.436:2	0/1:25,8:32:33:0.242:2	0/1:0,7:31:7:1.00:2	0/1:33,33:31:66:0.500:2	0/1:1,43:30:44:0.977:2	./.	0/1:1,69:31:70:0.986:2	0/1:1,46:31:47:0.979:2	0/1:29,20:32:49:0.408:2	./.	0/1:28,22:30:50:0.440:2
chr11	7686674	rs13854	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,28:32:70:0.400:2	0/1:34,23:32:57:0.404:2	0/1:0,6:32:6:1.00:2	0/1:50,48:32:98:0.490:2	0/1:0,73:32:73:1.00:2	0/1:2,108:32:110:0.982:2	0/1:0,93:33:93:1.00:2	0/1:0,99:32:99:1.00:2	0/1:73,61:34:134:0.455:2	./.	0/1:55,28:33:83:0.337:2
chr11	7687715	rs12801394	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,29:27:59:0.492:2	0/1:25,22:29:47:0.468:2	0/1:0,11:29:11:1.00:2	0/1:47,41:30:88:0.466:2	0/1:2,62:29:65:0.969:2	0/1:0,73:28:73:1.00:2	0/1:0,51:29:51:1.00:2	0/1:0,87:29:87:1.00:2	0/1:52,48:29:100:0.480:2	./.	0/1:38,59:30:97:0.608:2
chr11	7689018	rs149733078	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,6:32:117:0.051:2	./.	./.	./.	./.	./.
chr11	7694002	rs61729556	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,92:31:194:0.474:2	./.	./.	./.	./.	./.	./.	./.
chr11	7712471	rs4509745	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,53:31:53:1.00:2	0/1:0,32:31:32:1.00:2	./.	0/1:41,13:31:54:0.241:2	0/1:18,15:32:33:0.455:2	0/1:22,21:31:43:0.488:2	0/1:23,13:31:36:0.361:2	0/1:21,35:32:56:0.625:2	./.	0/1:35,6:32:41:0.146:2	0/1:36,28:32:64:0.438:2
chr11	7712523	rs4633461	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,24:31:57:0.421:2	./.	0/1:30,24:31:54:0.444:2	0/1:28,31:32:59:0.525:2	./.	./.
chr11	7712561	rs4519083	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,32:30:66:0.485:2	./.	0/1:30,35:31:65:0.538:2	0/1:25,35:32:60:0.583:2	./.	./.
chr11	7713176	rs74054133	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,35:31:62:0.565:2	./.	./.	0/1:27,45:32:72:0.625:2	./.	./.
chr11	7716855	rs4528317	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:31:72:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,64:30:64:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,46:30:47:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,78:32:78:1.00:2
chr11	7717233	rs62624491	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,22:33:45:0.489:2	0/1:23,12:32:35:0.343:2	./.	./.	./.	./.	./.	./.	0/1:40,23:33:63:0.365:2	./.	./.
chr11	7721870	rs10839849	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,48:31:110:0.436:2	0/1:39,45:32:84:0.536:2	0/1:0,19:31:19:1.00:2	0/1:1,184:31:185:0.995:2	0/1:1,161:31:162:0.994:2	0/1:0,169:31:170:1.00:2	0/1:2,184:31:186:0.989:2	0/1:2,185:31:188:0.989:2	0/1:95,83:32:178:0.466:2	0/1:0,124:31:125:1.00:2	0/1:0,178:32:178:1.00:2
chr11	7727872	rs12289558	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,11:32:34:0.324:2	./.	0/1:26,13:33:39:0.333:2	./.	./.	0/1:27,27:32:54:0.500:2	0/1:30,33:33:63:0.524:2
chr11	7727886	rs7927138	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:14,25:33:39:0.641:2	0/1:12,9:31:21:0.429:2	./.	./.	./.	./.	./.	0/1:0,51:32:51:1.00:2	./.	0/1:31,19:32:50:0.380:2	0/1:36,31:32:67:0.463:2
chr11	7817538	rs7949771	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,32:33:32:1.00:2	0/1:0,15:32:15:1.00:2	./.	0/1:11,5:33:16:0.313:2	./.	./.	./.	./.
chr11	7817665	rs72484720	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,187:31:188:0.995:2	0/1:0,185:30:185:1.00:2	./.	0/1:115,83:30:198:0.419:2	./.	./.	./.	./.
chr11	7817852	rs76615008	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,141:32:141:1.00:2	0/1:0,123:32:123:1.00:2	./.	0/1:71,55:33:126:0.437:2	./.	./.	./.	./.
chr11	7817856	rs78460198	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,146:31:146:1.00:2	0/1:0,124:32:124:1.00:2	./.	0/1:66,54:32:120:0.450:2	./.	./.	./.	./.
chr11	7817959	rs73406603	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,37:31:37:1.00:2	0/1:0,32:32:32:1.00:2	./.	0/1:17,6:31:23:0.261:2	./.	./.	./.	./.
chr11	7818056	rs73406604	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,33:33:33:1.00:2	0/1:1,29:33:30:0.967:2	./.	0/1:35,12:32:47:0.255:2	./.	./.	./.	./.
chr11	7818151	rs73406606	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,52:31:52:1.00:2	0/1:0,53:31:53:1.00:2	./.	0/1:35,34:32:69:0.493:2	./.	./.	./.	./.
chr11	7818166	rs190297076	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,22:32:49:0.449:2	./.	./.	./.
chr11	7818190	rs73406607	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,34:32:34:1.00:2	0/1:0,39:32:39:1.00:2	./.	0/1:12,20:33:32:0.625:2	./.	./.	./.	./.
chr11	7818313	rs73406609	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,40:30:40:1.00:2	0/1:0,34:30:34:1.00:2	./.	0/1:25,27:30:52:0.519:2	./.	./.	./.	./.
chr11	7818471	rs1482804	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,16:33:30:0.533:2	0/1:8,7:31:15:0.467:2	./.	./.	./.	./.	./.	./.	0/1:19,10:34:29:0.345:2	./.	./.
chr11	7846683	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:34:170:0.024:2
chr11	7846689	rs450205	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:34:177:0.023:2
chr11	7847129	rs149500920	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	7847208	rs1482791	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:44,50:32:94:0.532:2	0/1:10,28:31:38:0.737:2	0/1:4,4:32:8:0.500:2	./.	./.	./.	0/1:76,55:33:131:0.420:2	0/1:1,119:32:120:0.992:2	0/1:41,48:33:89:0.539:2	0/1:0,68:32:68:1.00:2	0/1:0,55:32:55:1.00:2
chr11	7847466	rs1482792	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,24:31:24:1.00:2	0/1:0,11:28:11:1.00:2	./.	0/1:1,23:30:24:0.958:2	0/1:0,14:30:14:1.00:2	./.	0/1:0,6:29:6:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,25:30:25:1.00:2
chr11	7847472	rs1482793	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:20,6:32:26:0.231:2	0/1:5,5:31:10:0.500:2	./.	./.	./.	./.	0/1:3,6:29:9:0.667:2	0/1:0,21:30:21:1.00:2	0/1:19,6:33:25:0.240:2	0/1:0,16:31:16:1.00:2	0/1:0,23:32:23:1.00:2
chr11	7949350	rs4758258	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,177:30:177:1.00:2	0/1:0,118:29:118:1.00:2	0/1:0,38:29:38:1.00:2	0/1:94,88:30:182:0.484:2	0/1:78,90:30:168:0.536:2	0/1:1,184:29:185:0.995:2	0/1:114,56:31:170:0.329:2	0/1:1,168:30:169:0.994:2	0/1:4,146:31:150:0.973:2	0/1:2,165:29:168:0.988:2	0/1:1,158:29:159:0.994:2
chr11	7949707	rs111488559	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,21:33:67:0.313:2	0/1:19,11:33:30:0.367:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	7949791	rs7933807	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,38:32:39:0.974:2	0/1:0,21:31:21:1.00:2	0/1:0,2:32:2:1.00:2	0/1:25,18:32:43:0.419:2	./.	./.	0/1:15,14:32:29:0.483:2	0/1:16,13:32:30:0.448:2	./.	0/1:9,17:33:26:0.654:2	0/1:13,20:31:33:0.606:2
chr11	7949860	rs7928451	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:2,37:30:39:0.949:2	0/1:0,19:31:19:1.00:2	./.	0/1:36,21:30:57:0.368:2	./.	./.	0/1:12,18:30:30:0.600:2	0/1:15,23:28:39:0.605:2	./.	0/1:14,19:30:33:0.576:2	0/1:28,44:30:72:0.611:2
chr11	7950024	rs12272735	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,85:32:190:0.447:2	0/1:0,173:31:173:1.00:2	0/1:178,5:33:183:0.027:2	0/1:96,92:32:188:0.489:2	0/1:7,168:33:175:0.960:2	0/1:87,66:32:154:0.431:2	0/1:94,66:32:160:0.413:2
chr11	7960172	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,16:31:177:0.090:2	./.
chr11	7982094	rs12363522	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,37:30:87:0.425:2	0/1:31,22:31:53:0.415:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	8009241	rs12421289	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,39:31:69:0.565:2	./.	./.	./.	./.	./.
chr11	8014479	rs4758267	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:32:86:1.00:2	0/1:1,38:32:39:0.974:2	0/1:0,16:30:16:1.00:2	0/1:49,52:31:101:0.515:2	./.	0/1:54,43:31:97:0.443:2	./.	./.	0/1:60,55:32:115:0.478:2	0/1:0,79:32:79:1.00:2	0/1:1,76:32:77:0.987:2
chr11	8016570	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,5:32:197:0.025:2	0/1:192,5:31:197:0.025:2	./.	./.	./.	./.	./.	./.
chr11	8016835	rs370553531	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,7:31:100:0.070:2	./.	./.
chr11	8016866	rs374187325	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,7:31:138:0.051:2	./.	./.
chr11	8061231	rs17847539	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,12:31:27:0.444:2	0/1:8,5:29:13:0.385:2
chr11	8103104	rs11041733	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	0/1:0,2:31:2:1.00:2	./.	0/1:2,3:30:5:0.600:2	0/1:0,20:27:20:1.00:2	0/1:0,9:27:9:1.00:2	./.	./.
chr11	8115699	rs4758289	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,59:30:121:0.504:2	./.	./.	./.	./.	0/1:47,48:31:95:0.505:2	0/1:56,39:29:95:0.411:2	0/1:39,32:29:73:0.451:2
chr11	8122091	rs72848487	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,45:30:88:0.511:2
chr11	8159843	rs73411617	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,20:31:50:0.400:2	./.
chr11	8159892	rs10839976	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,69:30:69:1.00:2	./.	./.	./.	./.	./.
chr11	8159907	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:32:42:0.095:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	8246181	rs1042359	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:29:11:0.545:2	./.	./.	./.	./.	./.	0/1:35,31:30:66:0.470:2	./.	0/1:55,34:28:90:0.382:2
chr11	8251921	rs3750952	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,34:28:76:0.447:2	0/1:32,20:29:52:0.385:2	./.	0/1:0,128:29:128:1.00:2	0/1:107,86:30:193:0.446:2	0/1:1,151:29:153:0.993:2	0/1:6,172:30:178:0.966:2	./.	0/1:68,53:30:121:0.438:2	0/1:0,89:29:89:1.00:2	0/1:46,35:30:81:0.432:2
chr11	8284943	rs368860054	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.
chr11	8414229	rs35296353	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,26:31:58:0.448:2	0/1:21,22:32:43:0.512:2	./.	./.	./.	0/1:37,27:31:65:0.422:2	./.	./.	./.	./.	./.
chr11	8435077	rs3751095	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:85,66:31:151:0.437:2	./.	0/1:62,54:32:116:0.466:2	./.	./.	./.	./.
chr11	8435078	rs3751096	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,66:32:155:0.426:2	./.	0/1:62,54:33:116:0.466:2	./.	./.	./.	./.
chr11	8462250	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:32:138:0.029:2	./.	./.	./.	./.	./.
chr11	8486310	rs1446464	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,9:32:24:0.375:2	0/1:58,46:32:104:0.442:2	0/1:47,40:31:87:0.460:2	0/1:63,40:31:104:0.388:2	0/1:39,39:32:78:0.500:2	./.	./.	./.	0/1:69,72:32:141:0.511:2
chr11	8646670	rs7947230	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,37:29:64:0.578:2	0/1:25,37:31:62:0.597:2	0/1:30,34:31:64:0.531:2	./.	./.	./.	./.
chr11	8646763	rs7935453	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,14:32:29:0.483:2	0/1:3,8:32:11:0.727:2	./.	./.	0/1:0,28:31:28:1.00:2	0/1:7,9:31:16:0.563:2	0/1:1,27:32:28:0.964:2	./.	./.	./.	./.
chr11	8662090	rs11042022	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:32:4:1.00:2	0/1:0,4:29:4:1.00:2	./.	./.	0/1:1,17:30:18:0.944:2	0/1:1,4:30:5:0.800:2	0/1:1,14:30:15:0.933:2	0/1:1,8:31:9:0.889:2	0/1:0,6:31:6:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,3:32:3:1.00:2
chr11	8662516	rs11042023	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,23:28:50:0.460:2	0/1:15,8:30:23:0.348:2	0/1:0,12:31:12:1.00:2	0/1:40,32:29:72:0.444:2	./.	0/1:42,40:28:82:0.488:2	./.	0/1:0,104:30:104:1.00:2	0/1:1,69:31:70:0.986:2	0/1:0,72:31:72:1.00:2	0/1:1,46:30:47:0.979:2
chr11	8662649	rs61743935	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:26,24:32:51:0.480:2	0/1:16,18:32:34:0.529:2	./.	./.	0/1:29,23:32:52:0.442:2	./.	0/1:50,30:32:80:0.375:2	./.	./.	./.	./.
chr11	8668082	rs61741649	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:105,79:33:184:0.429:2	0/1:77,86:33:163:0.528:2	./.	./.	0/1:91,76:32:167:0.455:2	./.	0/1:114,75:32:189:0.397:2	./.	./.	./.	./.
chr11	8671369	rs10840101	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:31:7:0.429:2	0/1:26,26:30:52:0.500:2	./.	./.	./.	0/1:51,27:30:78:0.346:2	./.	0/1:2,58:31:60:0.967:2	0/1:37,35:31:72:0.486:2
chr11	8706406	rs4670	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,58:31:120:0.483:2	./.	./.	./.	./.	0/1:75,83:30:158:0.525:2
chr11	8707233	rs6735	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,14:30:34:0.412:2	./.	0/1:28,5:31:33:0.152:2	./.	./.	./.	./.
chr11	8717003	rs2270956	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:32:6:1.00:2	./.	0/1:7,9:31:16:0.563:2	./.	0/1:14,12:33:26:0.462:2	0/1:1,37:31:38:0.974:2	./.	./.	0/1:19,14:33:33:0.424:2
chr11	8718154	rs144416409	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,29:32:54:0.537:2	./.	./.	./.	./.
chr11	8736168	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:32:193:0.026:2	./.	./.
chr11	8736222	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:160,4:31:164:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr11	8751564	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:24,9:13:33:0.273:2	./.	0/1:147,21:10:168:0.125:2	./.	./.	./.	./.	./.	./.	./.
chr11	8751640	rs3812762	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,18:33:18:1.00:2	./.	./.	0/1:107,67:32:174:0.385:2	./.	0/1:108,69:32:177:0.390:2	./.	./.	./.
chr11	8751889	rs3794153	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,5:32:8:0.625:2	./.	./.	0/1:5,4:31:9:0.444:2	./.	./.	0/1:0,9:33:9:1.00:2
chr11	8751957	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,4:28:31:0.129:2	./.	./.	./.	./.	./.
chr11	8933064	rs1133833	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:44,39:32:83:0.470:2	0/1:33,27:33:60:0.450:2	0/1:2,20:32:22:0.909:2	./.	./.	./.	./.	0/1:87,94:32:181:0.519:2	./.	./.	./.
chr11	8936464	rs35131475	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,77:32:177:0.435:2	./.	0/1:5,160:33:165:0.970:2	./.	./.	./.	./.
chr11	8942942	rs2653601	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:71,62:32:133:0.466:2	0/1:35,34:32:69:0.493:2	0/1:0,11:31:11:1.00:2	./.	./.	./.	./.	0/1:81,46:32:127:0.362:2	0/1:0,157:33:157:1.00:2	./.	./.
chr11	8942999	rs2568023	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,107:30:108:0.991:2	0/1:0,82:31:82:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,113:30:113:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,105:30:105:1.00:2	0/1:0,91:30:91:1.00:2	0/1:0,100:30:100:1.00:2	0/1:0,130:30:130:1.00:2	0/1:0,102:30:103:1.00:2	0/1:1,140:31:141:0.993:2
chr11	8947021	rs2653588	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:33:17:1.00:2	0/1:0,13:32:13:1.00:2	./.	0/1:0,21:31:21:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,23:34:23:1.00:2
chr11	8947179	rs2568077	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:34,39:32:73:0.534:2	0/1:26,20:32:46:0.435:2	0/1:0,18:31:18:1.00:2	./.	./.	./.	./.	0/1:56,42:32:98:0.429:2	0/1:2,87:33:89:0.978:2	./.	./.
chr11	8947283	rs3751066	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:38,28:32:66:0.424:2	0/1:26,19:31:45:0.422:2	./.	0/1:2,75:32:77:0.974:2	0/1:41,24:31:65:0.369:2	0/1:1,62:32:63:0.984:2	./.	0/1:40,34:33:76:0.459:2	./.	0/1:0,57:32:57:1.00:2	0/1:0,76:31:76:1.00:2
chr11	8947586	rs11042127	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:15,7:33:22:0.318:2	0/1:9,12:33:21:0.571:2	./.	0/1:22,14:33:36:0.389:2	./.	0/1:0,30:32:30:1.00:2	./.	./.	./.	0/1:14,13:32:27:0.481:2	./.
chr11	8948680	rs3751065	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,33:31:57:0.579:2	0/1:19,16:31:35:0.457:2	./.	0/1:0,82:31:83:1.00:2	0/1:40,32:30:72:0.444:2	0/1:0,78:30:78:1.00:2	./.	0/1:44,32:32:77:0.421:2	./.	0/1:1,77:32:78:0.987:2	0/1:0,84:31:84:1.00:2
chr11	8953721	rs34856936	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,18:29:36:0.514:2	./.	0/1:0,23:29:23:1.00:2	./.	./.	./.	./.
chr11	8959370	rs2742505	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:21,43:32:64:0.672:2	0/1:20,26:32:46:0.565:2	0/1:0,10:30:10:1.00:2	./.	./.	./.	./.	0/1:52,43:31:95:0.453:2	0/1:2,71:32:73:0.973:2	./.	./.
chr11	8959511	rs4910179	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,9:30:24:0.375:2	0/1:13,9:32:22:0.409:2	./.	0/1:2,19:34:21:0.905:2	0/1:15,12:32:27:0.444:2	0/1:0,33:32:33:1.00:2	./.	0/1:27,22:32:49:0.449:2	0/1:0,35:33:35:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,40:31:40:1.00:2
chr11	8959545	rs4909951	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,11:32:27:0.407:2	0/1:15,10:32:25:0.400:2	./.	0/1:2,20:32:22:0.909:2	0/1:0,25:32:25:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,30:32:30:1.00:2	0/1:24,18:32:42:0.429:2	./.	0/1:0,20:33:20:1.00:2	0/1:0,30:32:30:1.00:2
chr11	8977830	rs2568068	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:15,19:32:34:0.559:2	0/1:6,4:29:10:0.400:2	./.	0/1:26,15:32:41:0.366:2	./.	0/1:3,41:30:44:0.932:2	./.	./.	./.	0/1:22,9:31:31:0.290:2	./.
chr11	8985780	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,8:28:87:0.092:2	./.	./.	./.	./.	./.
chr11	9051475	rs3751057	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:108,84:33:192:0.438:2	0/1:75,46:31:121:0.380:2	./.	./.	./.	./.	./.	./.	./.	0/1:84,85:32:170:0.503:2	./.
chr11	9052423	rs7395988	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:34:56:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,76:33:76:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,96:33:96:1.00:2	0/1:1,73:33:74:0.986:2	0/1:0,90:34:90:1.00:2	0/1:0,61:33:62:1.00:2	0/1:0,51:33:51:1.00:2
chr11	9068979	rs72550808	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:74,75:33:149:0.503:2	./.	0/1:77,96:32:174:0.555:2	./.	./.	./.	./.
chr11	9069046	rs3751055	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,165:32:166:0.994:2	./.	./.
chr11	9087533	rs2003906	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,23:33:58:0.397:2	./.	./.	./.	./.	./.	./.	0/1:33,28:33:61:0.459:2
chr11	9225486	rs952374	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,49:32:50:0.980:2	0/1:1,38:32:39:0.974:2	./.	./.	./.	0/1:43,48:32:91:0.527:2	./.	./.	./.	./.	./.
chr11	9406349	rs4606477	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:33:36:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,94:33:94:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,59:33:59:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,30:31:30:1.00:2
chr11	9424845	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:28:46:0.087:2	./.	./.	./.	./.	./.
chr11	9424866	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:29:64:0.063:2	./.	./.	./.	./.	./.
chr11	9435847	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:30:92:0.043:2	./.	0/1:97,4:32:101:0.040:2	./.
chr11	9435857	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:30:98:0.041:2	./.	./.	./.	./.	./.
chr11	9435873	rs376273953	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,6:31:104:0.058:2	./.	0/1:111,4:31:115:0.035:2	./.	0/1:108,6:32:114:0.053:2	./.
chr11	9446769	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:27:43:0.093:2	./.	./.	./.
chr11	9455374	rs4910052	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,15:29:32:0.469:2	./.	./.	./.	./.	./.	./.	0/1:25,13:26:38:0.342:2
chr11	9519272	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,4:28:51:0.082:2	./.	./.	./.	./.	./.	./.
chr11	9534103	rs148786361	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,32:31:69:0.464:2	./.	./.	./.
chr11	9537904	rs10743108	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,16:33:30:0.533:2	0/1:16,8:33:24:0.333:2	0/1:0,4:34:4:1.00:2	0/1:0,59:33:59:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,54:33:54:1.00:2	0/1:0,37:33:37:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,28:33:29:1.00:2
chr11	9549142	rs11607631	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,31:31:65:0.477:2	./.	./.	./.	./.	0/1:38,26:31:64:0.406:2	./.	0/1:25,29:31:54:0.537:2
chr11	9595770	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:27:2:1.00:2
chr11	9595887	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.
chr11	9607032	rs10770042	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:35,33:33:68:0.485:2	0/1:14,13:32:27:0.481:2	./.	./.	0/1:34,17:32:51:0.333:2	./.	./.	./.	./.	0/1:31,16:33:47:0.340:2	./.
chr11	9749645	rs397686	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:13,5:31:18:0.278:2	0/1:5,10:28:15:0.667:2	./.	0/1:11,12:31:23:0.522:2	./.	0/1:9,8:29:17:0.471:2	./.	./.	0/1:12,11:31:23:0.478:2	./.	./.
chr11	9754188	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:32:93:0.043:2	./.	./.	./.	./.
chr11	9754221	rs360157	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,12:31:12:1.00:2	0/1:3,89:31:92:0.967:2	./.	0/1:61,29:31:90:0.322:2	0/1:58,51:31:109:0.468:2	0/1:2,83:31:85:0.976:2	0/1:0,92:33:92:1.00:2	./.	0/1:66,56:32:122:0.459:2
chr11	9769562	rs415895	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,16:33:45:0.356:2	0/1:12,7:32:19:0.368:2	0/1:0,8:33:8:1.00:2	0/1:1,48:32:49:0.980:2	./.	0/1:0,56:32:56:1.00:2	0/1:46,28:32:74:0.378:2	0/1:2,81:32:83:0.976:2	0/1:0,58:33:58:1.00:2	./.	0/1:27,20:31:48:0.426:2
chr11	9771457	rs61751344	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:24,18:31:42:0.429:2	0/1:10,6:32:16:0.375:2	./.	./.	./.	./.	./.	./.	./.	0/1:13,15:32:28:0.536:2	./.
chr11	9853777	rs12574508	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:25,27:33:52:0.519:2	0/1:19,12:33:31:0.387:2	./.	0/1:37,13:32:50:0.260:2	./.	0/1:15,21:32:36:0.583:2	./.	./.	./.	./.	./.
chr11	9878145	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:32:155:0.026:2	./.
chr11	9879827	rs371962413	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:33:94:0.043:2	./.
chr11	9879838	rs7102464	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,49:31:89:0.551:2	./.	./.	./.	./.	0/1:65,54:31:119:0.454:2	0/1:36,58:31:94:0.617:2	./.
chr11	10019879	rs16907355	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:32:15:0.400:2	./.	./.	./.	./.	./.	./.	./.
chr11	10503736	rs11042836	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,25:31:41:0.610:2	./.	./.	./.	./.	./.
chr11	10503756	rs16907852	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,14:31:35:0.400:2	./.	./.	0/1:14,16:33:30:0.533:2	./.	./.
chr11	10517126	rs143114453	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,22:32:55:0.400:2
chr11	10521749	rs114718879	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:118,74:31:193:0.385:2	./.	./.	./.	0/1:82,92:32:174:0.529:2	0/1:74,56:32:130:0.431:2	0/1:71,70:32:141:0.496:2
chr11	10521764	rs3741041	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,17:28:30:0.567:2	./.	./.	0/1:3,173:29:176:0.983:2	0/1:101,93:29:194:0.479:2	./.	./.	./.	0/1:70,61:29:131:0.466:2
chr11	10555589	rs1065052	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:30:10:0.400:2	./.	./.	0/1:0,60:29:60:1.00:2	0/1:29,21:28:50:0.420:2	./.	./.	./.	./.
chr11	10647702	rs2241489	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,10:30:17:0.588:2	0/1:1,25:30:26:0.962:2	0/1:16,8:31:24:0.333:2	./.	./.	./.	./.
chr11	10647977	rs74898367	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,63:31:123:0.512:2	./.	./.	./.	./.	./.
chr11	10647995	rs35468145	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,48:32:94:0.511:2	./.	./.	./.	./.	./.	./.
chr11	10650302	rs188666587	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,16:30:28:0.571:2
chr11	10650329	rs2278125	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:31:2:1.00:2	0/1:31,25:30:56:0.446:2	0/1:34,36:30:70:0.514:2	0/1:0,36:30:36:1.00:2	0/1:26,31:31:57:0.544:2	0/1:19,8:31:27:0.296:2	0/1:22,18:31:40:0.450:2	./.	./.
chr11	10650367	rs35857561	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,27:32:59:0.458:2	./.	./.	./.	0/1:27,16:32:43:0.372:2	./.	./.	./.
chr11	10655609	rs2162044	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,78:30:78:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,87:29:87:1.00:2	0/1:0,85:30:85:1.00:2	0/1:0,89:29:89:1.00:2	0/1:0,66:29:66:1.00:2	0/1:0,88:28:88:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,60:29:60:1.00:2	0/1:0,89:29:89:1.00:2
chr11	10673739	rs4909945	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,31:29:76:0.408:2	0/1:16,19:27:35:0.543:2	0/1:0,12:29:12:1.00:2	0/1:0,63:28:63:1.00:2	./.	0/1:49,31:28:80:0.388:2	0/1:66,41:29:107:0.383:2	0/1:50,57:29:107:0.533:2	0/1:50,29:29:79:0.367:2	0/1:36,26:29:62:0.419:2	0/1:51,30:27:81:0.370:2
chr11	10786142	rs3736326	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,32:32:61:0.525:2	0/1:26,20:32:46:0.435:2	0/1:0,12:31:12:1.00:2	0/1:52,51:31:103:0.495:2	0/1:23,48:30:71:0.676:2	0/1:0,97:31:97:1.00:2	./.	0/1:31,55:31:86:0.640:2	0/1:0,96:32:96:1.00:2	0/1:0,67:32:67:1.00:2	0/1:34,40:32:75:0.541:2
chr11	10786175	rs7118399	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:36,37:32:73:0.507:2	0/1:25,34:32:59:0.576:2	./.	./.	0/1:61,31:31:92:0.337:2	./.	0/1:1,76:31:77:0.987:2	0/1:86,50:31:136:0.368:2	./.	./.	0/1:65,44:31:109:0.404:2
chr11	10822350	rs7951708	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:32:96:1.00:2	0/1:0,44:32:45:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,76:31:76:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,76:31:76:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,80:32:81:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,98:31:98:1.00:2
chr11	10828361	rs10743151	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:46,37:31:83:0.446:2	0/1:25,10:32:35:0.286:2	0/1:0,18:31:18:1.00:2	./.	0/1:53,34:31:87:0.391:2	./.	0/1:0,67:32:67:1.00:2	0/1:42,32:32:74:0.432:2	0/1:72,57:32:129:0.442:2	0/1:1,67:32:68:0.985:2	0/1:0,121:31:121:1.00:2
chr11	10874594	rs2232928	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,35:31:35:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr11	10875055	rs1046297	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,27:33:52:0.519:2	./.	./.	./.	./.	./.
chr11	10876353	rs2232919	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,68:30:68:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr11	10876443	rs2232918	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,88:32:89:0.989:2	./.	./.	./.	./.	./.	./.	./.
chr11	11292700	rs10831567	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:18,7:32:25:0.280:2	0/1:4,7:32:11:0.636:2	./.	./.	0/1:0,54:32:54:1.00:2	./.	0/1:3,53:32:56:0.946:2	0/1:27,10:32:37:0.270:2	0/1:22,22:32:44:0.500:2	0/1:12,7:32:19:0.368:2	0/1:0,18:32:18:1.00:2
chr11	11348669	rs17435705	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,31:30:57:0.544:2	./.	./.	0/1:19,19:32:38:0.500:2	./.	./.
chr11	11354346	rs901553	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,16:28:44:0.364:2	0/1:27,30:28:57:0.526:2	0/1:39,18:29:57:0.316:2	0/1:37,29:30:66:0.439:2	./.	0/1:2,55:29:57:0.965:2	./.	./.
chr11	11913585	rs11022079	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,18:31:45:0.400:2	0/1:12,11:31:23:0.478:2	0/1:0,3:31:3:1.00:2	0/1:16,38:32:54:0.704:2	0/1:0,37:32:37:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,43:32:43:1.00:2	0/1:17,18:32:35:0.514:2	0/1:33,21:31:54:0.389:2	0/1:0,42:32:42:1.00:2	0/1:32,28:32:60:0.467:2
chr11	11941963	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:33:80:0.050:2	./.	./.	./.
chr11	11964588	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:33:82:0.049:2	./.	./.	./.
chr11	11976628	rs7933089	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,116:32:121:0.959:2	0/1:0,63:32:63:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,115:32:115:1.00:2	0/1:39,31:32:70:0.443:2	0/1:76,63:31:139:0.453:2	0/1:66,30:31:96:0.313:2	0/1:0,140:32:140:1.00:2	0/1:0,150:33:150:1.00:2	0/1:82,40:31:122:0.328:2	0/1:1,167:32:168:0.994:2
chr11	11977573	rs2307073	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:40,29:33:69:0.420:2	0/1:12,15:32:27:0.556:2	./.	0/1:32,31:32:63:0.492:2	./.	./.	./.	0/1:38,50:32:88:0.568:2	./.	./.	./.
chr11	11986061	rs3206824	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,8:30:8:1.00:2	0/1:0,4:32:4:1.00:2	0/1:1,3:32:4:0.750:2	0/1:0,21:32:21:1.00:2	0/1:9,5:30:14:0.357:2	0/1:15,4:31:19:0.211:2	0/1:9,7:32:16:0.438:2	0/1:0,19:30:19:1.00:2	0/1:0,19:32:19:1.00:2	0/1:9,8:32:17:0.471:2	0/1:0,23:32:23:1.00:2
chr11	12020245	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2	./.	./.	./.
chr11	12183846	rs28625145	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,49:30:50:0.980:2	0/1:30,21:31:51:0.412:2	0/1:0,41:32:41:1.00:2	0/1:2,55:31:57:0.965:2
chr11	12225829	rs201008424	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:85,9:17:94:0.096:2	./.	./.	0/1:69,6:23:75:0.080:2	./.	./.	./.
chr11	12225946	rs3763823	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,26:32:54:0.481:2	0/1:19,16:31:35:0.457:2	0/1:3,3:35:6:0.500:2	0/1:61,45:33:107:0.425:2	./.	0/1:0,70:31:70:1.00:2	0/1:0,84:32:84:1.00:2	0/1:1,87:32:88:0.989:2	0/1:55,49:34:105:0.471:2	0/1:0,78:32:78:1.00:2	0/1:37,31:32:68:0.456:2
chr11	12229655	rs2279390	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,52:32:91:0.571:2	0/1:0,97:32:97:1.00:2	./.	0/1:1,97:32:98:0.990:2	./.
chr11	12246233	rs3816921	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:32:15:0.600:2	./.	./.	./.	0/1:90,104:32:194:0.536:2	./.	./.	0/1:47,33:32:80:0.413:2	./.
chr11	12261007	rs61733868	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,58:32:132:0.439:2	./.	./.	./.
chr11	12262700	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:33:53:0.075:2	./.	./.
chr11	12265542	rs2270511	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,8:33:20:0.400:2	./.	./.	./.	0/1:112,78:32:190:0.411:2	0/1:95,90:32:185:0.486:2	./.	0/1:85,60:33:147:0.414:2	./.
chr11	12315186	rs10741578	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,32:32:63:0.508:2	0/1:39,27:31:66:0.409:2	0/1:33,30:32:63:0.476:2	0/1:0,56:31:56:1.00:2	./.
chr11	12315335	rs79609470	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,9:29:20:0.450:2	./.	./.	./.	./.	./.
chr11	12315407	rs10741579	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:31:25:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,17:32:17:1.00:2	0/1:10,4:30:14:0.286:2
chr11	12315716	rs1493951	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:30:31:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,17:32:17:1.00:2	0/1:23,23:33:46:0.500:2
chr11	12315848	rs1493952	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,7:32:10:0.700:2	0/1:5,6:30:11:0.545:2	0/1:7,3:29:10:0.300:2	0/1:0,8:30:8:1.00:2	./.
chr11	12315891	rs1493953	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,19:31:19:1.00:2	0/1:0,13:31:13:1.00:2	./.	0/1:0,9:31:9:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,9:33:9:1.00:2	0/1:3,9:29:12:0.750:2
chr11	12315915	rs1493954	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,3:29:12:0.250:2	0/1:5,5:28:10:0.500:2	0/1:10,5:28:15:0.333:2	0/1:9,10:30:19:0.526:2	0/1:0,15:29:15:1.00:2	./.
chr11	12316389	rs3812754	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:32:4:1.00:2	0/1:1,4:32:5:0.800:2	./.	0/1:1,4:33:5:0.800:2	./.	./.	./.	./.
chr11	12525925	rs11547363	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,86:31:184:0.467:2	./.	./.	./.	./.	./.	./.
chr11	12903443	rs2304733	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,53:31:96:0.552:2	0/1:21,19:32:40:0.475:2	0/1:2,11:30:13:0.846:2	0/1:49,83:31:132:0.629:2	0/1:2,153:31:155:0.987:2	0/1:56,56:31:112:0.500:2	0/1:0,145:31:145:1.00:2	0/1:93,79:31:172:0.459:2	0/1:70,61:31:131:0.466:2	0/1:0,92:32:92:1.00:2	0/1:36,46:31:82:0.561:2
chr11	13031846	rs12793946	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:54,56:31:111:0.509:2	0/1:42,46:31:88:0.523:2	./.	./.	0/1:98,94:30:192:0.490:2	./.	./.	./.	./.	./.	./.
chr11	13378457	rs62620045	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,39:30:78:0.500:2	0/1:49,48:31:97:0.495:2	./.	./.	./.	./.	./.
chr11	13378606	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:33:167:0.024:2
chr11	13427307	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,5:33:78:0.065:2	./.	./.	./.	./.	./.	./.
chr11	13441097	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:31:83:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	13441126	rs7114113	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,81:29:195:0.415:2	0/1:73,67:28:140:0.479:2	0/1:76,62:29:138:0.449:2	./.	./.	./.	./.	./.
chr11	13441229	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:162,5:30:167:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr11	13441253	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:132,4:31:136:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr11	13443241	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:132,5:28:137:0.036:2	./.	./.	./.	./.	./.	./.
chr11	13443250	rs3789325	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,58:33:113:0.513:2	0/1:76,58:32:134:0.433:2	0/1:68,54:33:122:0.443:2	./.	./.	./.	./.	./.
chr11	13514053	rs6256	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,35:33:55:0.636:2	0/1:16,29:33:45:0.644:2	./.	0/1:26,24:33:50:0.480:2	0/1:22,20:32:43:0.476:2	0/1:20,28:32:48:0.583:2	./.	./.	./.	0/1:41,24:33:65:0.369:2	./.
chr11	13514375	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:33:86:0.047:2	./.
chr11	13734555	rs12798176	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,50:32:121:0.413:2	./.	./.	./.
chr11	13743325	rs34341612	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,12:33:26:0.462:2	./.	./.	./.	./.
chr11	13984583	rs3761859	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,14:30:16:0.875:2	0/1:7,6:32:13:0.462:2	./.	./.	./.	0/1:17,9:31:26:0.346:2	./.	0/1:12,11:30:23:0.478:2	0/1:16,11:30:27:0.407:2	0/1:5,14:30:19:0.737:2	./.
chr11	14264916	rs2303973	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:33:12:0.667:2	./.	./.	0/1:48,48:32:96:0.500:2	./.	0/1:60,66:32:126:0.524:2	0/1:65,65:32:130:0.500:2	0/1:50,33:31:83:0.398:2	0/1:55,37:32:92:0.402:2
chr11	14280935	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:32:131:0.031:2	./.	./.	./.
chr11	14316304	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,6:22:117:0.051:2
chr11	14316305	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:31:82:0.049:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	14316344	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:32:108:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	14317370	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,3:31:33:0.091:2	./.	./.	./.	./.
chr11	14498536	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:33:79:0.051:2	./.	./.
chr11	14501147	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:33:191:0.021:2
chr11	14539450	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,5:32:139:0.036:2	./.	./.	./.
chr11	14541831	rs200731348	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,33:32:68:0.485:2	0/1:14,14:31:28:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	14632570	rs1403247	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,103:33:103:1.00:2	0/1:1,57:32:58:0.983:2	./.	0/1:75,58:33:134:0.436:2	0/1:2,103:32:105:0.981:2	0/1:88,68:33:156:0.436:2	0/1:0,133:32:133:1.00:2	0/1:80,65:33:146:0.448:2	0/1:25,82:33:107:0.766:2	0/1:0,92:32:92:1.00:2	0/1:2,171:33:173:0.988:2
chr11	14810665	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,5:33:11:0.455:2	./.	./.	./.	./.
chr11	14810762	rs4757268	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,21:33:35:0.600:2	0/1:8,6:33:14:0.429:2	./.	0/1:18,17:32:35:0.486:2	0/1:0,21:32:21:1.00:2	0/1:8,16:32:24:0.667:2	0/1:0,10:29:10:1.00:2	0/1:37,12:34:49:0.245:2	0/1:13,14:33:27:0.519:2	0/1:0,23:33:23:1.00:2	0/1:0,32:32:32:1.00:2
chr11	14913575	rs12794714	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,20:33:38:0.526:2	0/1:14,22:33:36:0.611:2	./.	0/1:61,52:32:113:0.460:2	0/1:0,109:32:109:1.00:2	./.	0/1:82,47:32:129:0.364:2	./.	0/1:66,43:34:109:0.394:2	0/1:0,66:33:66:1.00:2	0/1:0,83:33:83:1.00:2
chr11	14989319	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,7:13:27:0.259:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	14990543	rs5241	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,31:32:59:0.525:2	0/1:10,13:32:23:0.565:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	14991539	rs5239	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,176:31:177:0.994:2	0/1:0,72:32:73:1.00:2	0/1:0,26:32:26:1.00:2	0/1:2,187:32:189:0.989:2	0/1:0,185:32:185:1.00:2	0/1:0,186:32:186:1.00:2	0/1:1,187:33:188:0.995:2	0/1:0,185:32:185:1.00:2	0/1:0,184:33:184:1.00:2	0/1:0,181:32:181:1.00:2	0/1:0,171:32:172:1.00:2
chr11	15170686	rs61877970	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,69:32:133:0.519:2	./.	0/1:75,62:32:137:0.453:2	./.	./.	./.	0/1:42,25:31:67:0.373:2
chr11	15170702	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:31:78:0.051:2
chr11	15197503	rs202203397	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,28:31:52:0.538:2
chr11	15199957	rs1714376	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:32:32:1.00:2	0/1:1,16:31:17:0.941:2	0/1:0,6:30:6:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,31:31:31:1.00:2	0/1:32,22:30:54:0.407:2	0/1:24,22:33:46:0.478:2	0/1:0,32:30:32:1.00:2	0/1:0,39:32:39:1.00:2
chr11	15243047	rs61745838	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,85:31:191:0.445:2	./.	./.	./.	0/1:62,73:31:135:0.541:2	./.
chr11	15243190	rs61742947	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,75:31:155:0.484:2	./.	./.	./.
chr11	15247307	rs61748861	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,31:31:95:0.326:2	./.	./.	./.
chr11	15247308	rs185956954	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,31:30:95:0.326:2	./.	./.	./.
chr11	15247310	rs61748860	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,31:30:95:0.326:2	./.	./.	./.
chr11	15267586	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:32:96:0.042:2	./.	./.	./.
chr11	16133413	rs4617548	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,26:32:53:0.491:2	0/1:22,23:32:45:0.511:2	./.	0/1:2,60:33:62:0.968:2	0/1:15,21:32:36:0.583:2	0/1:19,29:32:48:0.604:2	0/1:19,12:33:31:0.387:2	0/1:36,25:31:61:0.410:2	0/1:25,36:32:61:0.590:2	0/1:0,38:31:38:1.00:2	0/1:63,5:32:68:0.074:2
chr11	16766194	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:31:73:0.055:2	./.	./.	./.
chr11	16810665	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,8:31:21:0.381:2	./.
chr11	16812397	rs35142528	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,7:32:21:0.333:2	./.	./.	./.	./.	0/1:55,61:31:116:0.526:2	./.	0/1:38,36:32:74:0.486:2	./.
chr11	16837788	rs217750	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,41:31:66:0.621:2	./.	./.	0/1:36,28:32:64:0.438:2	./.	./.
chr11	16838743	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:30:62:0.065:2	./.	./.	./.	./.
chr11	16848077	rs390974	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,25:31:48:0.521:2	0/1:10,13:31:23:0.565:2	./.	./.	./.	./.	./.	./.	0/1:19,27:32:46:0.587:2	./.	./.
chr11	17035718	rs61881311	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,5:31:5:1.00:2	0/1:0,4:32:4:1.00:2	0/1:1,2:34:3:0.667:2	./.	./.	./.	./.
chr11	17098800	rs191499881	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,27:32:59:0.458:2	./.	./.	./.	./.	./.	./.
chr11	17118687	rs11604561	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,22:32:56:0.393:2	./.	./.	./.	./.	0/1:29,34:34:63:0.540:2	0/1:28,21:33:49:0.429:2	./.
chr11	17167195	rs199769424	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,32:32:53:0.604:2	./.
chr11	17172071	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:34:193:0.021:2	./.	./.	./.	./.	./.
chr11	17172133	rs2302511	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,152:30:152:1.00:2	0/1:0,81:29:81:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,162:30:162:1.00:2	0/1:1,114:29:115:0.991:2	0/1:1,157:29:158:0.994:2	./.	0/1:3,164:29:167:0.982:2	0/1:0,165:30:165:1.00:2	0/1:0,173:30:173:1.00:2	0/1:0,177:29:177:1.00:2
chr11	17191019	rs214936	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,81:30:154:0.526:2	0/1:63,51:30:114:0.447:2	0/1:10,19:30:29:0.655:2	0/1:175,6:29:181:0.033:2	0/1:71,65:29:136:0.478:2	0/1:3,181:30:184:0.984:2	0/1:63,86:30:149:0.577:2	0/1:94,89:30:183:0.486:2	./.	./.	0/1:96,71:30:167:0.425:2
chr11	17333663	rs2521998	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:31:81:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,127:31:127:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,97:31:97:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,105:31:105:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,131:32:131:1.00:2
chr11	17351683	rs757081	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,10:33:23:0.435:2	0/1:6,10:31:16:0.625:2	./.	0/1:15,12:32:27:0.444:2	0/1:11,14:32:25:0.560:2	./.	0/1:11,5:32:16:0.313:2	0/1:9,8:32:17:0.471:2	0/1:11,17:33:28:0.607:2	0/1:12,16:31:28:0.571:2	0/1:15,14:33:29:0.483:2
chr11	17408630	rs5215	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,67:31:132:0.508:2	0/1:47,44:31:91:0.484:2	0/1:13,12:30:25:0.480:2	0/1:99,90:31:190:0.476:2	0/1:108,82:30:190:0.432:2	0/1:0,184:31:184:1.00:2	./.	0/1:111,83:31:194:0.428:2	./.	0/1:92,72:31:164:0.439:2	0/1:79,75:32:154:0.487:2
chr11	17408831	rs1800467	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,67:29:135:0.496:2	./.	./.
chr11	17409069	rs5218	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:30,22:32:52:0.423:2	0/1:21,9:30:30:0.300:2	./.	0/1:26,38:31:64:0.594:2	./.	0/1:32,44:30:76:0.579:2	./.	0/1:49,38:32:87:0.437:2	./.	./.	0/1:24,43:32:67:0.642:2
chr11	17409333	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:32:49:0.083:2	./.
chr11	17409479	rs375848765	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:34:154:0.026:2	./.	./.	./.	./.	./.
chr11	17409505	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:29:100:0.040:2	./.
chr11	17409572	rs5219	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,19:26:31:0.613:2	0/1:21,9:27:30:0.300:2	./.	0/1:20,26:27:46:0.565:2	0/1:36,15:27:51:0.294:2	0/1:0,60:28:60:1.00:2	./.	0/1:37,20:28:57:0.351:2	./.	0/1:24,18:28:42:0.429:2	0/1:23,12:29:35:0.343:2
chr11	17418477	rs757110	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,52:29:111:0.468:2	0/1:31,37:31:68:0.544:2	0/1:9,7:32:16:0.438:2	0/1:74,62:30:136:0.456:2	0/1:101,94:31:195:0.482:2	0/1:1,128:31:129:0.992:2	./.	0/1:86,87:31:173:0.503:2	./.	0/1:46,63:30:109:0.578:2	0/1:66,53:30:119:0.445:2
chr11	17419279	rs1799859	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:32:6:0.500:2	./.	0/1:49,29:32:78:0.372:2	0/1:26,26:33:52:0.500:2	./.	./.	./.	0/1:26,20:32:46:0.435:2	./.
chr11	17428564	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:27:71:0.056:2
chr11	17434284	rs1805036	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	17449929	rs1799858	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:31:10:0.500:2	./.	0/1:37,19:31:56:0.339:2	0/1:24,38:29:62:0.613:2	0/1:19,31:31:50:0.620:2	./.	./.	./.	0/1:45,29:31:74:0.392:2
chr11	17452429	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:31:84:0.048:2	./.	./.	./.
chr11	17452492	rs1799857	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:17,17:32:34:0.500:2	0/1:12,9:32:21:0.429:2	0/1:0,9:31:9:1.00:2	./.	0/1:26,14:32:40:0.350:2	0/1:19,34:31:53:0.642:2	0/1:1,63:31:64:0.984:2	0/1:30,25:32:55:0.455:2	./.	0/1:11,12:32:23:0.522:2	0/1:21,18:32:39:0.462:2
chr11	17464349	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:30:72:0.056:2
chr11	17496516	rs1048099	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:76,49:31:126:0.392:2	0/1:57,38:29:95:0.400:2	./.	0/1:1,161:30:162:0.994:2	0/1:101,66:29:167:0.395:2	0/1:98,73:30:171:0.427:2	./.	0/1:120,65:30:185:0.351:2	0/1:0,135:31:135:1.00:2	0/1:1,156:30:157:0.994:2	0/1:63,81:29:144:0.563:2
chr11	17517160	rs56165709	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,57:29:119:0.479:2	./.	./.	./.	./.	./.
chr11	17518351	rs201644053	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,79:30:163:0.485:2	./.	./.	./.	./.	./.	./.
chr11	17519742	rs1064074	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,35:29:81:0.432:2	0/1:26,26:27:52:0.500:2	./.	0/1:2,142:28:144:0.986:2	0/1:97,98:28:195:0.503:2	0/1:0,153:29:153:1.00:2	./.	0/1:1,187:28:189:0.995:2	0/1:73,87:28:160:0.544:2	0/1:74,72:29:146:0.493:2	0/1:72,61:28:134:0.459:2
chr11	17522638	rs10832796	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,15:29:39:0.385:2	0/1:18,17:31:35:0.486:2	0/1:4,3:31:7:0.429:2	0/1:31,31:30:62:0.500:2	0/1:37,26:31:63:0.413:2	./.	0/1:51,32:31:83:0.386:2	0/1:44,26:31:70:0.371:2	0/1:2,61:31:63:0.968:2	./.	./.
chr11	17526256	rs76769358	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,5:33:10:0.500:2	./.	./.	./.	./.	./.
chr11	17542439	rs2240487	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:77,88:30:165:0.533:2	0/1:53,54:30:107:0.505:2	0/1:8,6:29:14:0.429:2	0/1:83,66:30:149:0.443:2	0/1:110,58:28:168:0.345:2	0/1:1,157:29:160:0.994:2	0/1:92,92:29:184:0.500:2	0/1:98,68:29:166:0.410:2	./.	0/1:83,70:29:153:0.458:2	0/1:2,166:29:168:0.988:2
chr11	17573567	rs11823045	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:31:11:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	17573632	rs141597314	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,72:32:170:0.424:2	./.	./.	./.	./.	./.	./.	./.
chr11	17579783	rs61611064	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:16,23:31:39:0.590:2	0/1:12,22:31:34:0.647:2	0/1:6,4:29:10:0.400:2	./.	0/1:56,44:30:100:0.440:2	./.	./.	0/1:40,35:30:75:0.467:2	0/1:44,23:32:67:0.343:2	0/1:38,21:29:59:0.356:2	./.
chr11	17580175	rs7130190	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:28,15:30:43:0.349:2	0/1:10,13:30:23:0.565:2	./.	0/1:27,22:31:49:0.449:2	./.	./.	./.	0/1:39,51:31:90:0.567:2	./.	./.	./.
chr11	17580188	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:32:41:0.098:2	./.	./.
chr11	17593709	rs7106548	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:45,14:30:59:0.237:2	0/1:15,12:32:27:0.444:2	./.	./.	0/1:48,28:33:76:0.368:2	0/1:37,38:33:75:0.507:2	./.	0/1:0,87:32:87:1.00:2	0/1:34,38:33:72:0.528:2	0/1:45,37:32:82:0.451:2	0/1:35,24:33:59:0.407:2
chr11	17596313	rs4757548	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,44:31:67:0.657:2	0/1:20,17:31:37:0.459:2	./.	./.	0/1:85,56:31:141:0.397:2	0/1:50,48:31:98:0.490:2	./.	0/1:4,100:31:104:0.962:2	0/1:61,34:32:95:0.358:2	0/1:44,31:32:75:0.413:2	0/1:38,37:31:75:0.493:2
chr11	17598187	rs4756901	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,12:31:31:0.387:2	0/1:17,6:29:23:0.261:2	./.	./.	0/1:14,8:32:22:0.364:2	0/1:20,13:31:33:0.394:2	./.	0/1:0,27:31:27:1.00:2	0/1:11,9:32:20:0.450:2	0/1:15,9:31:24:0.375:2	0/1:17,7:31:24:0.292:2
chr11	17600033	rs2355466	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,11:29:18:0.611:2	0/1:5,6:29:11:0.545:2	./.	./.	0/1:0,38:30:38:1.00:2	0/1:17,19:29:36:0.528:2	./.	0/1:2,54:29:56:0.964:2	0/1:16,6:29:22:0.273:2	0/1:8,16:27:25:0.667:2	0/1:11,10:28:21:0.476:2
chr11	17614829	rs75133799	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,63:31:135:0.467:2	./.	./.	0/1:55,44:33:99:0.444:2	./.	./.
chr11	17615203	rs11024333	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,58:31:59:0.983:2	./.	./.	./.	./.	0/1:22,15:33:37:0.405:2	./.
chr11	17627613	rs7934079	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,50:32:51:0.980:2	0/1:0,29:31:29:1.00:2	./.	0/1:33,32:32:65:0.492:2	0/1:0,53:31:53:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,52:31:52:1.00:2	0/1:35,20:32:55:0.364:2	0/1:0,53:32:53:1.00:2	0/1:0,34:32:34:1.00:2	./.
chr11	17631751	rs2041028	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:32,26:31:58:0.448:2	0/1:14,13:31:27:0.481:2	./.	./.	0/1:2,64:30:66:0.970:2	0/1:32,31:30:63:0.492:2	./.	0/1:49,34:29:83:0.410:2	0/1:24,35:30:59:0.593:2	0/1:29,22:31:51:0.431:2	./.
chr11	17632306	rs1003490	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,14:30:31:0.452:2	0/1:9,12:30:21:0.571:2	./.	./.	0/1:25,37:29:62:0.597:2	0/1:18,21:30:39:0.538:2	./.	0/1:30,26:29:56:0.464:2	0/1:13,21:32:34:0.618:2	./.	./.
chr11	17632651	rs7111528	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:25,41:31:66:0.621:2	0/1:13,17:31:30:0.567:2	./.	./.	0/1:1,92:31:93:0.989:2	0/1:45,66:31:111:0.595:2	./.	0/1:60,57:31:117:0.487:2	0/1:44,48:33:92:0.522:2	0/1:24,47:32:71:0.662:2	./.
chr11	17635225	rs74727929	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,10:19:59:0.169:2	./.	./.	./.	./.	0/1:79,7:20:87:0.081:2	./.	./.	0/1:73,6:21:79:0.076:2	./.	0/1:63,7:18:70:0.100:2
chr11	17656686	rs11024350	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,12:30:35:0.343:2	./.	./.	./.	./.	0/1:18,20:32:38:0.526:2	./.
chr11	17660342	rs144908787	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,3:28:7:0.429:2	./.	./.	./.	./.	./.	./.
chr11	17663416	rs12422210	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,31:32:65:0.477:2	0/1:39,32:31:71:0.451:2	./.	0/1:33,34:32:67:0.507:2	0/1:28,24:32:52:0.462:2	./.	./.
chr11	17663444	rs10832824	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,91:29:91:1.00:2	0/1:42,33:30:75:0.440:2	./.	0/1:43,48:29:91:0.527:2	0/1:27,32:31:59:0.542:2	0/1:26,33:30:59:0.559:2	./.
chr11	17663742	rs2023483	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,76:31:76:1.00:2	0/1:32,42:30:74:0.568:2	0/1:60,4:28:64:0.063:2	0/1:40,48:30:89:0.545:2	0/1:34,18:32:52:0.346:2	0/1:23,23:29:46:0.500:2	./.
chr11	17667439	rs11024357	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,39:27:94:0.415:2	./.	./.	0/1:27,16:27:43:0.372:2
chr11	17793385	rs2229007	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,77:31:182:0.423:2	./.
chr11	17809639	rs10788	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,69:31:168:0.411:2	./.	./.	./.
chr11	17809724	rs1528	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,71:33:176:0.403:2	./.	./.	./.
chr11	17981047	rs211146	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:32:53:1.00:2	0/1:0,33:31:33:1.00:2	0/1:2,6:29:8:0.750:2	0/1:27,39:31:66:0.591:2	0/1:23,28:30:51:0.549:2	0/1:0,58:30:58:1.00:2	0/1:0,57:31:57:1.00:2	./.	0/1:0,67:32:67:1.00:2	0/1:0,54:32:54:1.00:2	0/1:38,33:31:71:0.465:2
chr11	18010289	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,4:31:93:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr11	18062214	rs191316407	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,6:34:18:0.333:2	./.	./.	./.	./.	./.	./.	./.
chr11	18102014	rs35394666	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,9:32:18:0.500:2	0/1:11,4:32:15:0.267:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	18108492	rs12363226	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,31:30:79:0.392:2	0/1:35,19:29:54:0.352:2	./.	./.	./.	0/1:51,45:29:96:0.469:2	./.	./.	0/1:61,74:31:135:0.548:2	./.	./.
chr11	18108512	rs35525096	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,37:29:70:0.529:2	0/1:21,32:29:53:0.604:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	18111804	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,4:33:148:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr11	18127464	rs77233279	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,23:30:39:0.590:2	./.	./.	./.	./.	0/1:4,10:31:14:0.714:2	./.
chr11	18158762	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:29:82:0.049:2	./.	./.	./.	./.
chr11	18158958	rs61733595	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:30:12:0.417:2	./.	./.	./.	0/1:76,66:31:142:0.465:2	./.	./.	./.	./.
chr11	18158993	rs12291017	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:59,50:30:109:0.459:2	0/1:38,14:30:52:0.269:2	0/1:7,5:30:12:0.417:2	./.	./.	./.	0/1:94,77:29:171:0.450:2	./.	./.	./.	./.
chr11	18159169	rs2468839	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:29:70:1.00:2	0/1:0,43:28:43:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,92:29:92:1.00:2	0/1:0,68:28:68:1.00:2	0/1:0,69:29:69:1.00:2	0/1:0,74:29:74:1.00:2	0/1:0,75:28:75:1.00:2	0/1:0,73:29:73:1.00:2	0/1:1,63:29:64:0.984:2	0/1:0,70:29:70:1.00:2
chr11	18159254	rs4274188	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,62:33:121:0.512:2	0/1:37,47:32:84:0.560:2	0/1:1,18:32:19:0.947:2	0/1:1,139:33:140:0.993:2	0/1:0,94:32:94:1.00:2	0/1:82,65:32:147:0.442:2	0/1:0,116:33:116:1.00:2	0/1:0,147:32:147:1.00:2	0/1:94,75:33:169:0.444:2	0/1:1,160:33:162:0.994:2	0/1:3,149:33:152:0.980:2
chr11	18159455	rs72863191	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,69:30:108:0.639:2	0/1:39,39:30:78:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	18159491	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,5:28:190:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr11	18159668	rs79562368	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,18:32:59:0.305:2	./.	./.	./.	./.
chr11	18159669	rs78408237	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,17:31:61:0.279:2	./.	./.	./.	./.
chr11	18159938	rs111567050	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:52,62:32:114:0.544:2	0/1:45,25:31:70:0.357:2	0/1:7,7:33:14:0.500:2	./.	./.	./.	0/1:71,33:32:104:0.317:2	./.	./.	./.	./.
chr11	18194827	rs2468774	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,61:33:123:0.496:2	./.	./.	0/1:78,71:33:149:0.477:2	0/1:69,61:32:130:0.469:2	0/1:64,45:33:109:0.413:2	0/1:65,34:32:99:0.343:2	0/1:57,36:33:93:0.387:2
chr11	18194878	rs2445180	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,81:33:177:0.458:2	./.	./.	0/1:0,187:33:187:1.00:2	0/1:98,89:33:187:0.476:2	0/1:89,59:33:148:0.399:2	0/1:82,62:33:144:0.431:2	0/1:77,53:33:130:0.408:2
chr11	18194944	rs11024531	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,57:29:114:0.500:2	0/1:48,32:31:80:0.400:2	0/1:3,5:33:8:0.625:2	0/1:81,67:30:148:0.453:2	0/1:66,79:30:145:0.545:2	./.	0/1:62,67:29:130:0.519:2	0/1:69,67:30:136:0.493:2	./.	./.	0/1:53,75:30:128:0.586:2
chr11	18194964	rs1869788	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,78:33:152:0.513:2	./.	./.	0/1:74,67:32:141:0.475:2	0/1:65,68:31:133:0.511:2	0/1:76,49:33:125:0.392:2	0/1:58,50:32:109:0.463:2	0/1:83,53:32:136:0.390:2
chr11	18195051	rs2445179	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,160:30:161:1.00:2	0/1:0,90:29:90:1.00:2	0/1:0,23:29:23:1.00:2	0/1:0,178:30:178:1.00:2	0/1:0,188:30:188:1.00:2	0/1:0,185:30:185:1.00:2	0/1:0,182:31:182:1.00:2	0/1:2,182:31:184:0.989:2	0/1:0,187:31:187:1.00:2	0/1:0,164:30:165:1.00:2	0/1:0,175:30:175:1.00:2
chr11	18195245	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:33:84:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	18195348	rs11024532	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:46,46:32:92:0.500:2	0/1:31,22:31:53:0.415:2	./.	./.	0/1:52,32:32:84:0.381:2	0/1:0,97:31:97:1.00:2	./.	./.	0/1:57,46:32:103:0.447:2	0/1:46,30:31:76:0.395:2	./.
chr11	18195448	rs4630269	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,45:31:96:0.469:2	./.	./.	0/1:35,32:30:67:0.478:2	0/1:29,49:30:78:0.628:2	0/1:33,46:32:79:0.582:2	0/1:36,38:31:74:0.514:2	0/1:46,48:32:94:0.511:2
chr11	18253176	rs2460827	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:31:41:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,42:30:42:1.00:2	0/1:0,26:29:26:1.00:2	0/1:0,37:30:37:1.00:2	0/1:1,34:31:35:0.971:2	0/1:0,39:29:39:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,47:30:47:1.00:2
chr11	18266970	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,4:31:118:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr11	18266989	rs202101890	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:113,4:34:117:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr11	18267027	rs2468844	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:32:77:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,100:31:100:1.00:2	0/1:49,31:31:80:0.388:2	0/1:1,79:31:80:0.988:2	0/1:43,53:31:96:0.552:2	0/1:0,110:31:110:1.00:2	0/1:2,92:32:94:0.979:2	0/1:0,87:31:87:1.00:2	0/1:42,30:32:72:0.417:2
chr11	18267057	rs116861605	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,31:32:78:0.397:2	./.	./.	./.	./.	./.
chr11	18267463	rs74872559	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:72,25:29:98:0.258:2	0/1:75,27:28:103:0.265:2	./.	0/1:156,11:27:167:0.066:2	0/1:105,16:28:121:0.132:2	0/1:168,12:28:180:0.067:2	0/1:157,6:34:163:0.037:2	0/1:104,10:28:114:0.088:2	./.	0/1:73,24:30:98:0.247:2	0/1:105,28:28:134:0.211:2
chr11	18267471	rs1136766	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,71:29:104:0.683:2	0/1:33,74:29:107:0.692:2	0/1:14,16:29:30:0.533:2	0/1:79,93:29:172:0.541:2	0/1:110,14:29:124:0.113:2	0/1:62,112:29:174:0.644:2	0/1:160,8:30:168:0.048:2	0/1:65,54:29:119:0.454:2	0/1:92,92:30:184:0.500:2	0/1:35,67:29:102:0.657:2	0/1:100,51:28:151:0.338:2
chr11	18267478	rs79620496	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:81,31:28:112:0.277:2	0/1:80,35:30:115:0.304:2	./.	0/1:154,15:30:169:0.089:2	0/1:102,25:30:127:0.197:2	0/1:170,12:30:182:0.066:2	0/1:148,7:27:155:0.045:2	0/1:121,13:31:134:0.097:2	./.	0/1:78,33:30:111:0.297:2	0/1:107,46:30:153:0.301:2
chr11	18269516	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:188,8:32:196:0.041:2	0/1:135,18:31:153:0.118:2	0/1:33,5:32:38:0.132:2	0/1:184,7:33:191:0.037:2	0/1:166,12:32:178:0.067:2	./.	0/1:160,9:33:170:0.053:2	0/1:182,14:34:196:0.071:2	./.	0/1:181,12:33:194:0.062:2	0/1:182,9:31:191:0.047:2
chr11	18290859	rs1136743	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,20:30:35:0.571:2	0/1:7,18:30:25:0.720:2	./.	0/1:52,6:29:58:0.103:2	0/1:18,8:31:26:0.308:2	0/1:46,6:32:52:0.115:2	0/1:33,4:28:37:0.108:2	0/1:63,6:22:69:0.087:2	./.	0/1:15,16:31:31:0.516:2	0/1:10,20:30:30:0.667:2
chr11	18290866	rs1136745	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,9:29:25:0.360:2	0/1:16,6:29:22:0.273:2	./.	0/1:38,6:29:44:0.136:2	0/1:14,4:29:18:0.222:2	0/1:41,6:27:47:0.128:2	./.	0/1:36,21:28:57:0.368:2	0/1:66,6:28:72:0.083:2	0/1:14,9:30:23:0.391:2	0/1:21,3:30:24:0.125:2
chr11	18290874	rs1136747	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:7,6:30:13:0.462:2	0/1:4,3:31:7:0.429:2	./.	./.	./.	./.	0/1:16,3:29:19:0.158:2	./.	./.	0/1:4,5:28:9:0.556:2	0/1:7,8:29:15:0.533:2
chr11	18290880	rs28720026	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,12:33:12:1.00:2	0/1:0,4:35:4:1.00:2	0/1:0,3:34:3:1.00:2	0/1:0,25:33:25:1.00:2	0/1:1,4:35:5:0.800:2	0/1:0,27:32:27:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,50:34:50:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,7:28:8:1.00:2
chr11	18291310	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,5:27:169:0.030:2	./.	./.	./.	./.	./.
chr11	18291321	rs12218	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,53:30:99:0.535:2	0/1:34,41:29:75:0.547:2	0/1:7,4:33:11:0.364:2	0/1:70,69:30:139:0.496:2	0/1:59,79:30:138:0.572:2	0/1:89,76:30:165:0.461:2	0/1:76,61:29:137:0.445:2	0/1:90,75:30:165:0.455:2	./.	0/1:0,93:29:93:1.00:2	0/1:63,61:29:124:0.492:2
chr11	18291356	rs1059571	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:32:108:0.037:2
chr11	18303533	rs61884288	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,51:32:138:0.370:2	./.
chr11	18306960	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:33:54:0.074:2	./.	./.
chr11	18309510	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:33:106:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	18319180	rs7128017	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,14:31:28:0.500:2	0/1:31,12:32:43:0.279:2	./.	0/1:23,29:31:52:0.558:2	0/1:0,65:33:65:1.00:2	./.	./.
chr11	18327684	rs1140047	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,29:31:75:0.387:2	0/1:23,16:31:39:0.410:2	0/1:7,7:31:14:0.500:2	0/1:0,75:31:75:1.00:2	0/1:1,40:30:41:0.976:2	0/1:0,63:30:63:1.00:2	0/1:0,69:30:69:1.00:2	0/1:1,58:31:59:0.983:2	0/1:0,95:31:95:1.00:2	0/1:0,48:31:48:1.00:2	0/1:65,33:31:100:0.337:2
chr11	18362829	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,3:33:53:0.057:2	./.	./.	./.	./.	./.	./.	./.
chr11	18369183	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,4:32:25:0.160:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	18421023	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,4:34:111:0.036:2	./.	./.	./.	./.	./.	./.	./.
chr11	18421047	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,4:32:95:0.042:2	./.	./.	./.	./.	./.	./.	./.
chr11	18422487	rs61736803	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:29:10:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:77,75:31:152:0.493:2
chr11	18424451	rs5030621	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:31:9:1.00:2	0/1:0,85:31:85:1.00:2	0/1:34,19:30:53:0.358:2	0/1:0,71:31:72:1.00:2	0/1:0,55:31:55:1.00:2	0/1:46,49:31:95:0.516:2	0/1:54,43:32:98:0.443:2	0/1:1,96:31:97:0.990:2	0/1:56,31:31:87:0.356:2
chr11	18424487	rs4820	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:32:4:1.00:2	0/1:0,56:33:56:1.00:2	0/1:35,11:32:46:0.239:2	0/1:0,57:32:57:1.00:2	0/1:0,47:33:47:1.00:2	0/1:31,30:33:61:0.492:2	0/1:48,31:34:79:0.392:2	0/1:1,58:33:59:0.983:2	0/1:50,24:32:74:0.324:2
chr11	18428876	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,5:32:190:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	18428880	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,5:32:182:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	18467821	rs2658565	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:32:74:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,70:33:70:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,51:33:51:1.00:2	0/1:0,90:34:90:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,99:34:99:1.00:2
chr11	18487305	rs17851143	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,57:30:128:0.445:2
chr11	18536234	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:30:99:0.040:2	./.	./.
chr11	18536342	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:32:58:0.069:2	./.	./.
chr11	18555901	rs56151250	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:17,25:29:42:0.595:2	0/1:12,9:32:21:0.429:2	./.	0/1:23,36:31:59:0.610:2	./.	0/1:0,41:32:41:1.00:2	0/1:24,18:30:42:0.429:2	./.	0/1:25,22:32:47:0.468:2	./.	./.
chr11	18555949	rs55999230	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:39,36:32:75:0.480:2	0/1:22,16:32:38:0.421:2	./.	0/1:25,62:33:87:0.713:2	./.	0/1:0,75:32:75:1.00:2	0/1:41,34:32:75:0.453:2	./.	0/1:37,43:33:80:0.538:2	./.	./.
chr11	18600322	rs10500835	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:17,8:32:25:0.320:2	0/1:16,9:29:25:0.360:2	./.	0/1:19,16:30:35:0.457:2	./.	0/1:15,20:28:35:0.571:2	0/1:17,8:31:25:0.320:2	./.	0/1:27,16:31:43:0.372:2	./.	./.
chr11	18633897	rs35411689	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,40:32:70:0.571:2	./.	0/1:36,46:33:82:0.561:2	./.	./.	./.
chr11	18633971	rs11605097	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:50,48:32:98:0.490:2	0/1:26,19:32:45:0.422:2	./.	0/1:77,64:31:141:0.454:2	0/1:4,69:31:73:0.945:2	./.	./.	0/1:72,39:32:111:0.351:2	./.	0/1:83,34:32:117:0.291:2	./.
chr11	18723210	rs144559255	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,16:30:16:1.00:2	./.	./.	./.	./.	./.	0/1:40,51:32:91:0.560:2	./.	./.
chr11	18727448	rs1867877	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,51:31:110:0.464:2	./.	./.	./.
chr11	18728529	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:33:175:0.023:2	./.	./.
chr11	18728650	rs2289965	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:23,24:28:47:0.511:2	0/1:16,9:27:25:0.360:2	./.	0/1:24,32:28:56:0.571:2	./.	./.	0/1:1,64:27:65:0.985:2	./.	./.	./.	0/1:27,27:27:54:0.500:2
chr11	18729367	rs57253324	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,31:30:72:0.431:2	./.	./.	./.	./.	./.
chr11	18729819	rs78892734	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,25:30:56:0.446:2
chr11	18731004	rs72880717	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,20:28:47:0.426:2	0/1:22,28:29:50:0.560:2	./.	./.	./.	0/1:35,55:29:90:0.611:2	./.	0/1:48,48:28:96:0.500:2	0/1:29,41:30:70:0.586:2	./.	0/1:32,26:28:58:0.448:2
chr11	18735465	rs11024769	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,184:31:191:0.963:2	./.	./.	./.	./.	0/1:86,69:32:155:0.445:2	./.
chr11	18735548	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:33:184:0.022:2	./.
chr11	18735947	rs7125943	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,65:29:115:0.565:2	0/1:44,27:29:71:0.380:2	0/1:6,10:30:16:0.625:2	0/1:0,151:30:151:1.00:2	0/1:0,136:29:136:1.00:2	./.	0/1:0,176:29:176:1.00:2	0/1:90,74:28:164:0.451:2	0/1:63,58:31:122:0.479:2	0/1:0,88:30:88:1.00:2	0/1:63,45:29:108:0.417:2
chr11	18737095	rs4424652	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,56:33:125:0.448:2	0/1:35,26:31:61:0.426:2	0/1:8,11:31:19:0.579:2	0/1:0,186:31:186:1.00:2	0/1:0,187:31:187:1.00:2	./.	0/1:1,183:32:184:0.995:2	0/1:113,83:31:196:0.423:2	0/1:79,71:32:150:0.473:2	0/1:0,114:32:114:1.00:2	0/1:66,61:32:127:0.480:2
chr11	18738281	rs10766494	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,37:31:84:0.440:2	0/1:35,25:31:60:0.417:2	0/1:13,6:30:19:0.316:2	0/1:0,111:30:111:1.00:2	0/1:0,100:29:100:1.00:2	./.	0/1:0,112:30:112:1.00:2	0/1:67,62:30:129:0.481:2	0/1:62,59:31:121:0.488:2	0/1:0,111:30:111:1.00:2	0/1:52,38:30:90:0.422:2
chr11	18738329	rs61886891	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:68,83:31:151:0.550:2	0/1:55,43:31:98:0.439:2	0/1:14,19:31:33:0.576:2	./.	./.	0/1:93,100:31:193:0.518:2	./.	0/1:95,102:31:197:0.518:2	0/1:78,115:32:193:0.596:2	./.	0/1:83,89:31:172:0.517:2
chr11	18741652	rs201892326	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,43:33:94:0.457:2	./.	./.	./.	./.	./.	./.	./.
chr11	18743180	rs10832975	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:51,27:31:78:0.346:2	0/1:17,16:32:33:0.485:2	0/1:0,13:31:13:1.00:2	./.	0/1:77,50:31:127:0.394:2	0/1:62,37:31:99:0.374:2	0/1:77,55:32:132:0.417:2	0/1:1,129:32:130:0.992:2	./.	./.	0/1:46,33:33:79:0.418:2
chr11	18751041	rs1550870	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,17:28:41:0.415:2	./.	0/1:0,45:28:45:1.00:2	./.	./.	./.	0/1:9,14:27:23:0.609:2	0/1:0,23:29:23:1.00:2
chr11	18764026	rs4757707	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:27:39:1.00:2	0/1:0,13:28:13:1.00:2	0/1:0,6:30:6:1.00:2	0/1:16,18:29:34:0.529:2	0/1:15,5:27:20:0.250:2	./.	0/1:7,21:27:28:0.750:2	0/1:1,49:27:50:0.980:2	0/1:1,39:29:40:0.975:2	0/1:15,22:29:37:0.595:2	./.
chr11	18793533	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:28:50:0.080:2	./.
chr11	18955412	rs138752944	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,28:32:46:0.609:2	./.	./.
chr11	18955413	rs140371088	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,28:31:45:0.622:2	./.	./.
chr11	18955744	rs11599929	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,25:30:48:0.521:2	./.	0/1:95,25:30:120:0.208:2	0/1:19,22:32:41:0.537:2	./.	0/1:19,23:31:42:0.548:2	./.	./.
chr11	18955861	rs72890000	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,27:31:53:0.509:2	./.	./.	./.	./.	./.	./.	./.
chr11	18956194	rs2014931	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:40,45:32:85:0.529:2	0/1:39,26:30:65:0.400:2	0/1:0,13:31:13:1.00:2	./.	0/1:49,59:31:109:0.546:2	0/1:151,39:31:190:0.205:2	0/1:61,54:31:115:0.470:2	0/1:46,148:31:194:0.763:2	./.	./.	0/1:59,32:31:91:0.352:2
chr11	18956196	rs78179510	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,36:30:102:0.353:2	./.	0/1:163,30:30:193:0.155:2	./.	./.	./.	./.	./.
chr11	18956530	rs3858489	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,3:33:13:0.231:2	0/1:17,5:33:22:0.227:2	./.	./.	0/1:12,5:31:17:0.294:2	0/1:42,6:30:48:0.125:2	0/1:13,5:32:18:0.278:2	0/1:14,12:28:26:0.462:2	./.	./.	0/1:12,11:32:23:0.478:2
chr11	19077627	rs118176470	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:30:11:0.727:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	19077755	rs11024969	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,30:28:53:0.566:2	./.	./.	./.	./.
chr11	19077765	rs10833049	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,45:31:46:0.978:2	0/1:24,24:32:48:0.500:2	./.	./.	./.	0/1:24,23:30:47:0.489:2
chr11	19077904	rs11024970	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,50:33:95:0.526:2	./.	./.	./.	./.
chr11	19077936	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:33:81:0.049:2	./.
chr11	19164618	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:31:56:0.071:2	./.	./.	./.	./.
chr11	19167850	rs2271001	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,32:33:68:0.471:2	0/1:15,21:31:36:0.583:2	0/1:0,13:32:13:1.00:2	0/1:27,44:32:71:0.620:2	0/1:32,28:32:60:0.467:2	0/1:36,40:32:76:0.526:2	0/1:34,34:32:68:0.500:2	0/1:40,28:31:68:0.412:2	0/1:37,48:33:85:0.565:2	./.	0/1:41,39:31:80:0.488:2
chr11	19204210	rs189477598	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,31:29:77:0.403:2	./.	./.	./.	./.	./.	./.
chr11	19207826	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,5:28:150:0.033:2	./.	./.	./.	./.	./.
chr11	19207841	rs13451	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:44,41:33:85:0.482:2	0/1:37,28:32:65:0.431:2	./.	./.	./.	./.	0/1:64,48:32:112:0.429:2	0/1:95,66:31:161:0.410:2	./.	./.	./.
chr11	19213922	rs190182843	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:31:11:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	19246829	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:31:143:0.028:2	./.	./.
chr11	19247281	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,4:32:77:0.052:2	./.	./.	./.	./.	./.	./.
chr11	19251826	rs11821023	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,32:32:66:0.485:2	./.	0/1:34,37:31:71:0.521:2	./.
chr11	19256582	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,10:32:135:0.075:2
chr11	19854088	rs6483617	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,5:29:6:0.833:2	0/1:39,27:33:66:0.409:2	0/1:29,21:32:50:0.420:2	0/1:1,62:32:63:0.984:2	0/1:0,56:32:56:1.00:2	./.	./.	0/1:0,63:32:63:1.00:2	0/1:0,59:33:59:1.00:2
chr11	19901632	rs11025310	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,31:32:49:0.633:2	0/1:12,18:31:30:0.600:2	./.	0/1:45,38:31:83:0.458:2	0/1:0,81:31:81:1.00:2	0/1:35,37:32:72:0.514:2	0/1:63,26:32:89:0.292:2	0/1:49,58:32:107:0.542:2	0/1:40,37:33:77:0.481:2	0/1:0,66:32:66:1.00:2	0/1:29,31:32:60:0.517:2
chr11	19914117	rs145926987	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,15:30:31:0.484:2	./.	./.	./.
chr11	19955500	rs1372989	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,10:34:10:1.00:2	0/1:0,6:32:6:1.00:2	./.	0/1:0,12:32:12:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,11:31:11:1.00:2
chr11	19970501	rs11025335	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:38,25:28:63:0.397:2	0/1:19,24:29:43:0.558:2	0/1:8,7:29:15:0.467:2	./.	./.	./.	./.	0/1:87,59:29:146:0.404:2	./.	./.	./.
chr11	19970558	rs2585773	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:27:51:1.00:2	0/1:0,39:28:39:1.00:2	0/1:0,7:28:7:1.00:2	0/1:0,69:27:69:1.00:2	0/1:1,87:27:88:0.989:2	0/1:0,71:28:71:1.00:2	0/1:0,126:28:126:1.00:2	0/1:0,97:27:97:1.00:2	0/1:0,74:27:74:1.00:2	0/1:0,53:28:53:1.00:2	0/1:0,63:26:63:1.00:2
chr11	19970579	rs2707084	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,54:29:55:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,51:32:51:1.00:2
chr11	20044631	rs200955221	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,49:32:119:0.412:2	./.	./.	./.	./.	./.	./.	./.
chr11	20044696	rs2449501	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:34:12:0.500:2	./.	./.	./.	0/1:50,39:32:89:0.438:2	./.	./.	./.	./.
chr11	20065673	rs3802799	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,40:31:92:0.435:2	./.	0/1:43,42:31:85:0.494:2	./.	0/1:44,50:31:94:0.532:2	./.	0/1:28,27:31:55:0.491:2	./.
chr11	20065779	rs3802800	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:32:27:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,36:32:37:1.00:2	0/1:0,35:31:35:1.00:2	0/1:14,18:30:32:0.563:2	0/1:0,55:32:55:1.00:2	0/1:24,24:33:49:0.500:2	0/1:0,24:34:24:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,37:32:37:1.00:2
chr11	20067064	rs7125647	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:16,25:30:41:0.610:2	0/1:11,13:31:24:0.542:2	0/1:2,4:31:6:0.667:2	./.	0/1:23,16:29:39:0.410:2	0/1:23,20:30:43:0.465:2	./.	0/1:31,35:30:66:0.530:2	0/1:26,22:31:48:0.458:2	0/1:0,32:31:32:1.00:2	0/1:0,30:31:31:1.00:2
chr11	20070533	rs145171062	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,65:30:113:0.575:2	./.	./.	./.
chr11	20089792	rs1442711	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,49:32:100:0.490:2	./.
chr11	20089944	rs1442710	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,16:28:45:0.356:2	./.
chr11	20099112	rs4757028	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,24:33:59:0.407:2	0/1:18,17:31:35:0.486:2	0/1:2,5:32:7:0.714:2	0/1:0,61:33:61:1.00:2	0/1:28,31:33:59:0.525:2	0/1:0,74:32:74:1.00:2	0/1:0,57:32:57:1.00:2	0/1:30,37:33:67:0.552:2	0/1:0,68:33:68:1.00:2	0/1:0,67:32:67:1.00:2	0/1:33,31:33:64:0.484:2
chr11	20099541	rs6483642	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,18:31:47:0.383:2	0/1:11,8:31:19:0.421:2	0/1:0,6:32:6:1.00:2	0/1:0,37:31:37:1.00:2	0/1:16,16:30:32:0.500:2	0/1:21,22:30:43:0.512:2	0/1:0,23:32:23:1.00:2	0/1:23,20:31:43:0.465:2	0/1:0,33:32:33:1.00:2	0/1:0,32:32:32:1.00:2	0/1:48,13:31:61:0.213:2
chr11	20101704	rs1867114	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,23:32:70:0.333:2	0/1:17,12:31:29:0.414:2	0/1:5,8:31:13:0.615:2	0/1:0,83:31:83:1.00:2	0/1:74,36:31:110:0.327:2	0/1:62,48:31:110:0.436:2	0/1:0,100:31:100:1.00:2	0/1:72,48:31:120:0.400:2	0/1:45,30:32:75:0.400:2	0/1:0,75:32:75:1.00:2	0/1:40,30:32:70:0.429:2
chr11	20101744	rs1867115	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,20:33:67:0.299:2	0/1:15,11:33:26:0.423:2	0/1:8,5:32:13:0.385:2	0/1:0,74:32:74:1.00:2	0/1:62,28:31:90:0.311:2	0/1:56,46:32:102:0.451:2	0/1:0,80:32:80:1.00:2	0/1:64,43:32:107:0.402:2	0/1:36,27:33:63:0.429:2	0/1:0,56:33:56:1.00:2	0/1:34,31:32:65:0.477:2
chr11	20104669	rs2028570	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,6:31:14:0.429:2	0/1:1,70:31:71:0.986:2	./.	0/1:39,37:31:76:0.487:2	0/1:31,28:31:59:0.475:2	0/1:43,28:31:71:0.394:2	0/1:41,39:31:80:0.488:2	0/1:35,28:32:63:0.444:2	0/1:22,29:32:51:0.569:2
chr11	20112417	rs2243624	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,17:29:57:0.298:2	./.	./.	./.	./.	./.	./.
chr11	20112492	rs1837971	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,29:33:30:0.967:2	0/1:2,15:33:18:0.882:2	./.	0/1:0,42:33:42:1.00:2	./.	0/1:32,22:32:54:0.407:2	0/1:32,19:32:51:0.373:2	0/1:30,23:33:53:0.434:2	0/1:14,16:34:30:0.533:2	0/1:11,12:34:23:0.522:2	0/1:36,22:33:58:0.379:2
chr11	20117232	rs2289566	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,176:32:176:1.00:2	0/1:76,53:31:129:0.411:2	./.	0/1:88,84:31:172:0.488:2	0/1:109,86:31:195:0.441:2	./.	0/1:74,68:31:142:0.479:2	0/1:109,76:32:185:0.411:2
chr11	20124914	rs2243411	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,134:29:134:1.00:2	0/1:0,68:29:68:1.00:2	0/1:0,26:29:26:1.00:2	0/1:0,185:29:185:1.00:2	0/1:0,157:29:157:1.00:2	0/1:0,183:30:183:1.00:2	0/1:0,160:29:160:1.00:2	0/1:1,171:29:172:0.994:2	0/1:0,179:30:179:1.00:2	0/1:1,159:30:160:0.994:2	0/1:1,137:29:138:0.993:2
chr11	20129311	rs35891966	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,29:30:52:0.558:2	./.	./.	./.
chr11	20178131	rs75944386	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,12:31:45:0.267:2	./.	./.	0/1:31,30:30:61:0.492:2	./.	./.	./.	./.
chr11	20178619	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,38:30:94:0.404:2	./.	./.	./.	./.	./.	./.
chr11	20178717	rs831464	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:3,11:31:14:0.786:2	0/1:5,7:30:12:0.583:2	0/1:1,3:29:4:0.750:2	./.	0/1:9,13:30:22:0.591:2	./.	./.	./.	0/1:6,6:32:12:0.500:2	./.	./.
chr11	20385927	rs145143466	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,10:30:34:0.294:2	./.	./.	./.	./.	./.
chr11	20388753	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:32:157:0.025:2	./.
chr11	20404613	rs3824886	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,60:32:60:1.00:2	0/1:2,55:32:57:0.965:2	0/1:2,62:33:64:0.969:2	0/1:0,58:33:58:1.00:2	0/1:1,78:32:79:0.987:2	0/1:0,47:32:47:1.00:2
chr11	20419261	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,6:28:86:0.070:2	./.	./.	./.	./.	./.
chr11	20424452	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	20515716	rs148386517	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,36:33:77:0.468:2	./.
chr11	20529886	rs6483700	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,118:32:119:0.992:2	0/1:0,62:32:62:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,151:31:151:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,154:31:154:1.00:2	0/1:0,169:32:169:1.00:2	0/1:0,121:32:122:1.00:2	0/1:0,126:32:126:1.00:2
chr11	20621186	rs76857783	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,54:31:130:0.415:2	./.	./.	./.	0/1:70,61:33:131:0.466:2	./.	./.
chr11	20622975	rs1443547	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:32:3:1.00:2	0/1:0,8:32:8:1.00:2	./.	0/1:0,4:28:4:1.00:2	./.	./.	./.	./.	./.
chr11	20623007	rs7109418	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,14:30:14:1.00:2	./.	0/1:10,7:31:17:0.412:2	0/1:10,9:32:19:0.474:2	0/1:0,11:32:11:1.00:2	0/1:14,6:28:20:0.300:2	./.
chr11	20623023	rs2241941	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,26:29:26:1.00:2	./.	0/1:15,17:30:32:0.531:2	0/1:22,12:29:34:0.353:2	0/1:0,20:31:20:1.00:2	0/1:21,11:30:32:0.344:2	0/1:9,6:30:15:0.400:2
chr11	20623042	rs1443548	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:33:5:1.00:2	0/1:1,49:33:50:0.980:2	0/1:0,48:31:48:1.00:2	0/1:20,35:31:55:0.636:2	0/1:1,52:32:53:0.981:2	0/1:33,19:32:52:0.365:2	0/1:0,27:33:27:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,22:32:22:1.00:2
chr11	20623156	rs1443549	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:32:62:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,10:34:10:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,152:33:152:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,123:33:123:1.00:2	0/1:0,141:32:141:1.00:2	0/1:0,78:33:78:1.00:2	0/1:0,62:33:62:1.00:2	0/1:0,48:32:48:1.00:2
chr11	20639400	rs7925597	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:30:74:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,3:28:3:1.00:2	0/1:0,75:30:75:1.00:2	0/1:0,61:29:61:1.00:2	0/1:0,76:30:76:1.00:2	0/1:0,65:30:65:1.00:2	0/1:0,95:29:95:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,84:30:84:1.00:2	0/1:0,93:30:93:1.00:2
chr11	20648364	rs3740870	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:23,14:33:37:0.378:2	0/1:13,16:33:29:0.552:2	./.	./.	./.	./.	./.	0/1:32,14:31:46:0.304:2	./.	./.	./.
chr11	20648380	rs1805091	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,29:30:29:1.00:2	0/1:0,20:32:20:1.00:2	0/1:1,3:29:4:0.750:2	./.	./.	0/1:22,21:30:44:0.488:2	./.	0/1:28,11:29:39:0.282:2	./.	./.	0/1:24,30:30:54:0.556:2
chr11	20673867	rs2276433	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,57:31:112:0.509:2	0/1:26,36:30:62:0.581:2	0/1:2,7:28:9:0.778:2	0/1:0,122:31:122:1.00:2	./.	./.	0/1:47,63:31:110:0.573:2	./.	./.	0/1:56,50:31:107:0.472:2	./.
chr11	20805286	rs8176785	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:33:43:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,55:33:55:1.00:2	0/1:23,30:33:53:0.566:2	0/1:0,69:32:69:1.00:2	0/1:4,61:33:65:0.938:2	0/1:2,69:33:71:0.972:2	0/1:25,29:34:54:0.537:2	0/1:0,55:34:55:1.00:2	0/1:0,64:33:64:1.00:2
chr11	20805335	rs2280363	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,20:30:50:0.400:2	./.	0/1:58,5:31:63:0.079:2	./.	0/1:28,29:31:57:0.509:2	./.	./.
chr11	21392487	rs4151056	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:29,27:31:56:0.482:2	0/1:15,11:32:26:0.423:2	0/1:9,3:31:12:0.250:2	./.	./.	./.	./.	./.	./.	0/1:36,30:32:66:0.455:2	./.
chr11	21581805	rs8176789	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:30:103:1.00:2	0/1:0,83:31:83:1.00:2	0/1:1,18:29:19:0.947:2	0/1:0,137:30:137:1.00:2	0/1:0,115:29:116:1.00:2	0/1:0,126:30:129:1.00:2	0/1:0,120:30:121:1.00:2	0/1:62,60:30:122:0.492:2	./.	./.	./.
chr11	22242729	rs4312063	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,31:30:31:1.00:2	0/1:0,20:29:20:1.00:2	./.	0/1:0,43:29:43:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,34:29:34:1.00:2	0/1:15,11:30:26:0.423:2	0/1:24,21:30:45:0.467:2	0/1:0,56:31:56:1.00:2	0/1:1,38:29:39:0.974:2	0/1:0,39:29:39:1.00:2
chr11	22271870	rs7481951	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,37:32:79:0.468:2	0/1:31,29:32:60:0.483:2	./.	0/1:25,49:31:74:0.662:2	0/1:1,44:32:45:0.978:2	0/1:30,29:31:59:0.492:2	./.	./.	0/1:42,62:33:104:0.596:2	0/1:42,34:32:76:0.447:2	0/1:0,138:33:138:1.00:2
chr11	22360140	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:33:52:0.077:2	./.	./.	./.	./.
chr11	22399187	rs1971865	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:31:68:0.059:2	./.	./.	./.
chr11	22646370	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:32:79:0.051:2	./.	./.
chr11	22646800	rs113910234	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,5:31:16:0.313:2	./.
chr11	22646984	rs61752920	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,18:28:24:0.750:2	./.	0/1:15,17:29:32:0.531:2	./.	0/1:15,16:30:31:0.516:2	./.	./.	./.
chr11	22646993	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,9:31:22:0.409:2
chr11	22647366	rs3740615	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,62:31:137:0.453:2	./.	0/1:72,57:31:129:0.442:2	./.	0/1:81,73:31:154:0.474:2	0/1:64,51:32:115:0.443:2	./.	./.
chr11	22696451	rs922571	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,23:32:45:0.511:2	0/1:13,13:30:26:0.500:2	0/1:0,6:31:6:1.00:2	0/1:44,26:30:70:0.371:2	0/1:2,42:31:44:0.955:2	0/1:2,34:31:36:0.944:2	0/1:22,33:31:55:0.600:2	0/1:38,23:29:61:0.377:2	0/1:39,27:33:66:0.409:2	0/1:0,39:32:39:1.00:2	0/1:0,35:32:35:1.00:2
chr11	22707327	rs61737410	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,15:32:22:0.682:2	0/1:4,10:32:14:0.714:2	./.	./.	./.	./.	./.	./.	0/1:9,13:32:22:0.591:2	./.	./.
chr11	22849347	rs79508587	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,12:31:33:0.364:2	./.	./.
chr11	24759855	rs1564992	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,101:29:103:0.981:2	./.	0/1:62,68:29:130:0.523:2	./.	./.	0/1:70,38:31:108:0.352:2	./.	0/1:95,53:31:148:0.358:2
chr11	24784862	rs2716532	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:0,53:32:53:1.00:2	0/1:9,3:32:12:0.250:2	0/1:0,65:31:65:1.00:2	0/1:20,19:31:39:0.487:2	0/1:46,53:31:99:0.535:2	0/1:22,16:31:38:0.421:2	0/1:2,50:31:52:0.962:2	0/1:0,62:32:62:1.00:2	0/1:44,21:32:65:0.323:2	0/1:0,106:32:106:1.00:2
chr11	25098911	rs116821457	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,22:31:43:0.512:2	0/1:10,19:33:29:0.655:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	25098938	rs7930185	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,18:33:37:0.486:2	0/1:18,10:33:28:0.357:2	./.	0/1:37,31:33:68:0.456:2	0/1:26,19:32:45:0.422:2	0/1:30,18:33:48:0.375:2	0/1:22,17:33:39:0.436:2	0/1:0,43:33:43:1.00:2	0/1:22,20:34:42:0.476:2	0/1:28,24:33:52:0.462:2	0/1:39,19:33:58:0.328:2
chr11	26568966	rs2663168	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:89,93:33:182:0.511:2	0/1:48,42:33:90:0.467:2	0/1:0,31:32:31:1.00:2	0/1:96,91:33:187:0.487:2	0/1:91,74:33:165:0.448:2	0/1:0,177:32:177:1.00:2	0/1:0,196:33:196:1.00:2	0/1:3,189:32:192:0.984:2	0/1:1,193:33:194:0.995:2	0/1:1,167:33:168:0.994:2	0/1:0,193:33:193:1.00:2
chr11	26586801	rs15783	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:43,30:31:73:0.411:2	0/1:17,22:30:39:0.564:2	0/1:0,12:31:12:1.00:2	./.	0/1:24,15:28:39:0.385:2	0/1:0,63:31:63:1.00:2	0/1:0,46:31:46:1.00:2	0/1:3,60:32:63:0.952:2	0/1:25,34:32:59:0.576:2	./.	0/1:0,84:32:85:1.00:2
chr11	26587133	rs293980	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:105,83:29:188:0.441:2	0/1:78,41:29:119:0.345:2	0/1:1,20:30:21:0.952:2	0/1:186,5:29:191:0.026:2	0/1:92,85:29:177:0.480:2	0/1:1,179:30:180:0.994:2	0/1:3,173:30:176:0.983:2	0/1:0,177:30:177:1.00:2	0/1:105,87:30:192:0.453:2	0/1:98,92:29:190:0.484:2	0/1:0,175:30:175:1.00:2
chr11	26587394	rs11029619	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,6:31:16:0.375:2	./.
chr11	26621117	rs11604868	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,93:30:197:0.472:2	./.	./.	./.	./.	./.
chr11	26656563	rs7946841	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,25:32:76:0.329:2	0/1:27,24:32:51:0.471:2	./.	0/1:0,33:32:33:1.00:2	./.	0/1:0,86:32:86:1.00:2	0/1:0,66:32:66:1.00:2	0/1:66,38:32:105:0.365:2
chr11	26677947	rs10835051	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,26:33:58:0.448:2	0/1:21,10:32:31:0.323:2	0/1:0,11:32:11:1.00:2	0/1:1,68:33:69:0.986:2	0/1:0,35:32:35:1.00:2	./.	0/1:0,53:32:53:1.00:2	0/1:37,31:32:68:0.456:2	0/1:1,54:33:55:0.982:2	0/1:0,52:32:52:1.00:2	0/1:1,90:32:91:0.989:2
chr11	26692733	rs7114378	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,11:32:21:0.524:2	0/1:101,76:32:177:0.429:2	./.	0/1:96,83:32:179:0.464:2	./.	0/1:85,68:32:153:0.444:2	./.	./.	./.
chr11	26692742	rs7128823	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,10:31:16:0.625:2	0/1:102,73:31:175:0.417:2	./.	0/1:85,79:30:164:0.482:2	./.	0/1:76,57:31:133:0.429:2	./.	./.	./.
chr11	26694979	rs4369354	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,31:29:69:0.449:2	0/1:31,18:29:49:0.367:2	0/1:31,19:31:50:0.380:2	0/1:0,52:30:52:1.00:2	./.	0/1:0,67:30:67:1.00:2	0/1:1,62:29:63:0.984:2	0/1:39,33:29:72:0.458:2
chr11	26700310	rs12278761	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,39:32:80:0.488:2	./.
chr11	26702664	rs10734383	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:31:71:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,84:31:84:1.00:2	0/1:0,58:30:58:1.00:2	0/1:0,98:30:98:1.00:2	0/1:0,65:30:66:1.00:2	0/1:0,86:30:86:1.00:2	0/1:0,87:31:87:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,82:30:82:1.00:2
chr11	26705310	rs3924551	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:32:5:0.800:2	0/1:15,17:32:32:0.531:2	0/1:21,22:31:43:0.512:2	0/1:0,66:31:66:1.00:2	0/1:0,44:32:44:1.00:2	0/1:46,3:33:49:0.061:2	0/1:0,34:34:34:1.00:2	./.	0/1:2,45:32:47:0.957:2
chr11	26718732	rs72883299	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:38,7:29:45:0.156:2	./.	./.	./.	0/1:37,10:20:47:0.213:2	0/1:39,11:17:50:0.220:2	0/1:36,12:21:48:0.250:2	0/1:26,8:22:34:0.235:2	0/1:48,5:25:53:0.094:2	0/1:37,9:27:46:0.196:2	0/1:27,11:27:38:0.289:2
chr11	26732923	rs4322349	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:32:9:0.444:2	./.	./.	./.	./.	0/1:41,48:32:89:0.539:2	./.	0/1:0,84:32:84:1.00:2	./.
chr11	26734209	rs10742156	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,19:32:19:1.00:2	0/1:0,103:32:103:1.00:2	0/1:0,100:33:100:1.00:2	0/1:0,133:32:133:1.00:2	0/1:0,140:33:140:1.00:2	0/1:0,140:33:140:1.00:2	0/1:0,103:34:103:1.00:2	0/1:0,107:33:107:1.00:2	0/1:0,112:33:112:1.00:2
chr11	27017619	rs34987309	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,28:32:46:0.609:2	./.	./.	./.	./.	./.	./.
chr11	27018019	rs2350934	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,14:31:34:0.412:2	./.
chr11	27018177	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,30:33:69:0.435:2	0/1:18,13:32:31:0.419:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	27076977	rs2305095	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,17:31:41:0.415:2	./.	./.	0/1:35,22:30:57:0.386:2	./.	./.	./.
chr11	27077118	rs10767598	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:33:72:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,67:32:67:1.00:2	0/1:1,86:34:87:0.989:2	0/1:0,82:33:82:1.00:2	0/1:0,78:33:78:1.00:2
chr11	27114788	rs3183973	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,25:32:44:0.568:2	0/1:16,15:32:31:0.484:2	./.	./.	./.	0/1:18,25:31:43:0.581:2	0/1:35,19:32:54:0.352:2	0/1:28,23:32:51:0.451:2	./.	0/1:30,17:32:47:0.362:2	./.
chr11	27147270	rs1044273	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,47:30:114:0.412:2	0/1:53,75:30:128:0.586:2	./.	./.	./.	./.
chr11	27148847	rs77035197	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,9:29:26:0.346:2	./.	./.	0/1:17,11:30:28:0.393:2	./.
chr11	27362257	rs80317617	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,84:32:192:0.438:2	./.	./.	./.	./.	./.
chr11	27362260	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr11	27362359	rs17244028	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,70:33:123:0.569:2	0/1:69,46:32:115:0.400:2	./.	./.	0/1:85,67:33:152:0.441:2	./.	0/1:73,47:33:120:0.392:2	./.
chr11	27384585	rs11549824	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,34:29:60:0.567:2	./.	./.	./.	./.	./.
chr11	27390089	rs2447997	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:33:44:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,58:33:58:1.00:2	0/1:0,71:33:71:1.00:2
chr11	27395524	rs181117893	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,49:32:106:0.462:2	./.	./.	./.	./.	./.	./.	./.
chr11	27406844	rs6484295	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:16,10:29:26:0.385:2	0/1:11,10:31:21:0.476:2	./.	./.	0/1:16,13:29:29:0.448:2	./.	0/1:20,19:28:39:0.487:2	./.	0/1:43,21:31:64:0.328:2	./.	0/1:23,16:31:39:0.410:2
chr11	27520274	rs140841859	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,50:33:117:0.427:2	./.	./.	./.	./.	./.
chr11	27679662	rs2353512	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:28:88:1.00:2	0/1:0,63:28:63:1.00:2	0/1:0,6:28:6:1.00:2	0/1:0,118:29:118:1.00:2	0/1:0,107:28:107:1.00:2	0/1:0,119:28:119:1.00:2	0/1:0,117:29:117:1.00:2	0/1:0,119:28:119:1.00:2	0/1:0,96:29:96:1.00:2	0/1:0,92:29:92:1.00:2	0/1:0,112:28:112:1.00:2
chr11	27679916	rs6265	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,62:31:62:1.00:2	0/1:0,48:31:48:1.00:2	./.	./.	0/1:54,33:32:87:0.379:2	./.	./.	./.	0/1:45,41:32:87:0.477:2	0/1:39,28:31:67:0.418:2	./.
chr11	27680744	rs11030101	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,19:32:40:0.475:2	./.	0/1:19,20:31:39:0.513:2	0/1:22,18:31:40:0.450:2	0/1:10,25:32:35:0.714:2	0/1:29,33:31:62:0.532:2
chr11	27681176	rs149254890	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,38:31:80:0.475:2	0/1:48,37:29:85:0.435:2	0/1:48,27:30:75:0.360:2	0/1:47,30:31:77:0.390:2	0/1:47,27:30:74:0.365:2	0/1:52,36:31:88:0.409:2
chr11	27681197	rs112614050	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,6:32:49:0.122:2	./.	0/1:16,29:31:45:0.644:2	./.	0/1:26,4:32:30:0.133:2	0/1:29,7:33:36:0.194:2	0/1:17,11:31:28:0.393:2
chr11	27720937	rs66866077	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,9:30:22:0.409:2	./.	0/1:15,10:31:25:0.400:2	./.	./.	./.	./.	./.
chr11	27720983	rs79679324	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,23:31:37:0.622:2	./.	./.	./.
chr11	28057957	rs10458896	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,69:32:129:0.535:2	0/1:38,49:32:87:0.563:2	0/1:10,9:33:19:0.474:2	0/1:57,69:32:126:0.548:2	./.	0/1:0,134:32:134:1.00:2	0/1:83,51:33:134:0.381:2	0/1:94,80:33:174:0.460:2	0/1:0,128:33:128:1.00:2	0/1:58,61:33:119:0.513:2	0/1:90,89:32:179:0.497:2
chr11	28110151	rs12272419	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,59:33:126:0.468:2	./.	./.	./.	./.	0/1:78,55:33:133:0.414:2	./.	./.
chr11	28134974	rs60970073	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,29:32:75:0.387:2	0/1:40,10:32:50:0.200:2	0/1:13,3:32:16:0.188:2	0/1:0,34:31:34:1.00:2	./.	0/1:0,24:30:24:1.00:2	0/1:59,18:32:77:0.234:2	0/1:87,14:32:102:0.139:2	0/1:0,32:32:32:1.00:2	0/1:108,13:32:121:0.107:2	0/1:2,49:31:51:0.961:2
chr11	28135042	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,5:31:123:0.041:2	./.	./.	./.	0/1:145,6:29:151:0.040:2
chr11	28352293	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:181,12:30:193:0.062:2	0/1:134,10:32:144:0.069:2	./.	0/1:182,16:32:198:0.081:2	0/1:172,18:31:190:0.095:2	./.	0/1:177,17:32:194:0.088:2	0/1:182,10:32:192:0.052:2	0/1:174,19:33:194:0.098:2	0/1:183,9:32:192:0.047:2	0/1:180,13:31:195:0.067:2
chr11	30033191	rs3802914	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:33,34:31:68:0.507:2	0/1:14,24:30:38:0.632:2	0/1:4,4:28:8:0.500:2	./.	0/1:53,39:31:92:0.424:2	./.	./.	0/1:38,43:30:81:0.531:2	./.	./.	0/1:35,41:31:76:0.539:2
chr11	30033461	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,4:30:39:0.103:2	./.	./.
chr11	30255185	rs6169	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,3:31:3:1.00:2	0/1:24,32:32:56:0.571:2	0/1:0,41:31:41:1.00:2	0/1:49,28:31:77:0.364:2	0/1:0,57:32:57:1.00:2	./.	0/1:0,57:33:57:1.00:2	0/1:0,50:32:50:1.00:2	./.
chr11	30255203	rs140328289	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,24:32:50:0.480:2	./.	./.	./.	./.	./.	./.
chr11	30902837	rs55719241	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:33:14:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	30925058	rs34110661	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:32:14:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	30926525	rs61747656	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,12:31:26:0.462:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	31327316	rs2616815	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,42:32:42:1.00:2	0/1:2,10:31:12:0.833:2	0/1:48,33:32:81:0.407:2	0/1:0,57:31:57:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,77:32:77:1.00:2	0/1:55,41:32:96:0.427:2	0/1:0,70:33:70:1.00:2	0/1:29,13:32:42:0.310:2	./.
chr11	31329373	rs2761591	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,34:32:82:0.415:2	./.
chr11	31455032	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	31703352	rs10767903	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr11	32112954	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,6:31:49:0.122:2
chr11	32112962	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,6:29:49:0.122:2
chr11	32120010	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:157,5:30:162:0.031:2	./.	./.	./.	./.	./.	./.
chr11	32120070	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:90,4:32:94:0.043:2	./.	./.	0/1:112,4:30:116:0.034:2	./.	./.	./.
chr11	32124978	rs4876	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:71,48:28:119:0.403:2	0/1:47,40:29:87:0.460:2	0/1:9,3:29:12:0.250:2	./.	0/1:65,76:29:141:0.539:2	./.	0/1:14,116:29:130:0.892:2	0/1:20,159:29:179:0.888:2	0/1:99,83:29:182:0.456:2	./.	0/1:91,61:27:152:0.401:2
chr11	32125011	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:32:163:0.025:2	./.	./.	./.	./.	./.
chr11	32125961	rs11529889	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:10,8:33:18:0.444:2	0/1:8,4:32:12:0.333:2	./.	./.	0/1:16,7:32:23:0.304:2	./.	0/1:0,15:32:15:1.00:2	0/1:0,28:32:28:1.00:2	0/1:36,10:33:46:0.217:2	./.	0/1:20,4:32:24:0.167:2
chr11	32417945	rs16754	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,18:31:34:0.529:2	./.	0/1:20,25:32:45:0.556:2	0/1:26,20:33:46:0.435:2	./.	./.	0/1:22,8:30:30:0.267:2
chr11	32456298	rs2234583	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,43:32:69:0.623:2	./.	0/1:11,11:31:22:0.500:2
chr11	32460464	rs6508	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,38:31:87:0.437:2	./.	0/1:51,30:31:81:0.370:2
chr11	32460575	rs11031784	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:32:10:1.00:2	0/1:25,26:31:51:0.510:2	./.	./.	./.	0/1:32,24:31:56:0.429:2	./.	0/1:35,32:31:67:0.478:2	0/1:21,29:33:50:0.580:2
chr11	32460624	rs3087923	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,18:26:18:1.00:2	0/1:1,13:28:14:0.929:2	./.	./.	./.	./.	./.	./.	0/1:18,17:29:35:0.486:2	./.	0/1:7,8:27:15:0.533:2
chr11	32460676	rs34163689	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:28:5:0.600:2	0/1:0,2:31:2:1.00:2
chr11	32460873	rs7943101	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:27:3:1.00:2	0/1:1,9:28:10:0.900:2	./.	./.	./.	0/1:5,8:30:13:0.615:2	./.	./.	./.
chr11	32460882	rs59090256	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,4:30:10:0.400:2	./.	0/1:9,6:30:15:0.400:2
chr11	32460913	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,7:29:17:0.412:2	./.	./.	./.
chr11	32461043	rs58239926	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,4:28:18:0.222:2
chr11	32461059	rs76286407	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:33:7:0.500:2	0/1:0,16:31:16:1.00:2
chr11	32461090	rs7946086	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,14:33:29:0.483:2	./.	./.	./.	0/1:16,7:32:23:0.304:2	./.	0/1:13,7:33:20:0.350:2	0/1:10,18:32:28:0.643:2
chr11	32461596	rs72893546	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.	./.	0/1:7,5:33:12:0.417:2	./.	./.	./.
chr11	32461619	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,6:30:7:0.857:2	./.	./.	./.
chr11	32461675	rs72893548	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:32:4:1.00:2	0/1:11,9:29:20:0.450:2	./.	./.	./.	0/1:10,7:26:17:0.412:2	./.	./.	./.
chr11	32462091	rs3858450	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,6:32:16:0.375:2	./.	0/1:12,10:31:22:0.455:2
chr11	32462206	rs11031787	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,14:32:37:0.378:2	0/1:20,22:32:42:0.524:2
chr11	32462576	rs4275604	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:9,11:33:20:0.550:2	./.	./.	./.	0/1:0,13:32:13:1.00:2	0/1:8,7:31:15:0.467:2	0/1:8,4:30:12:0.333:2	0/1:0,12:30:12:1.00:2
chr11	32462642	rs11031788	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,21:33:34:0.618:2	0/1:11,16:31:27:0.593:2
chr11	32462695	rs72893553	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,22:30:60:0.367:2	./.	./.	./.
chr11	32462873	rs72893557	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,50:32:123:0.407:2	./.	./.	./.
chr11	32608625	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,5:26:72:0.069:2	./.
chr11	32610177	rs114184976	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,8:32:29:0.276:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	32624405	rs201893	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,31:31:31:1.00:2	./.	0/1:26,11:32:37:0.297:2	0/1:0,39:33:39:1.00:2	0/1:26,13:32:39:0.333:2	0/1:41,36:32:77:0.468:2
chr11	32657266	rs201854	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,33:28:57:0.579:2	0/1:22,7:29:29:0.241:2	./.	0/1:29,17:30:46:0.370:2	0/1:0,24:30:24:1.00:2	0/1:0,46:29:46:1.00:2	0/1:0,13:29:13:1.00:2	0/1:2,31:29:33:0.939:2	0/1:0,38:30:38:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,71:30:71:1.00:2
chr11	32705076	rs72895286	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	./.	./.	./.	./.	./.	./.
chr11	32722320	rs11031943	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,3:30:14:0.214:2	0/1:10,7:31:17:0.412:2	0/1:0,2:27:2:1.00:2	0/1:7,7:31:14:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr11	32852167	rs61889489	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,28:31:48:0.583:2	./.	./.	./.	./.	./.	./.
chr11	32874926	rs11032025	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:31:8:0.375:2	./.	./.	0/1:21,26:31:47:0.553:2	0/1:19,31:31:51:0.620:2	0/1:43,31:29:74:0.419:2	0/1:0,53:30:53:1.00:2	0/1:0,56:31:56:1.00:2	0/1:32,30:29:62:0.484:2
chr11	32954344	rs1022586	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:31:90:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,94:30:94:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,108:32:108:1.00:2
chr11	32955122	rs2297781	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,39:29:75:0.520:2	./.	./.	0/1:50,47:30:97:0.485:2	./.
chr11	32956244	rs7940077	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:32:27:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,46:32:47:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,37:33:37:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,49:33:49:1.00:2
chr11	32956620	rs7481878	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,64:30:65:0.985:2	0/1:0,42:29:42:1.00:2	0/1:0,5:29:5:1.00:2	0/1:1,72:30:73:0.986:2	0/1:9,23:29:32:0.719:2	0/1:51,28:28:79:0.354:2	0/1:12,17:30:29:0.586:2	./.	0/1:1,83:31:84:0.988:2	0/1:33,34:29:67:0.507:2	0/1:85,4:31:89:0.045:2
chr11	32996805	rs11032076	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,6:31:18:0.333:2	0/1:32,4:32:36:0.111:2	0/1:12,5:31:17:0.294:2	0/1:0,35:32:35:1.00:2	./.	0/1:17,19:31:36:0.528:2	0/1:0,38:32:38:1.00:2
chr11	33053005	rs36077875	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,24:33:58:0.414:2	0/1:29,32:32:61:0.525:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	33053107	rs966191	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,19:32:50:0.380:2	0/1:25,23:32:48:0.479:2	0/1:4,3:32:7:0.429:2	0/1:1,40:32:41:0.976:2	0/1:19,14:32:33:0.424:2	./.	0/1:21,29:32:50:0.580:2	./.	0/1:0,54:33:54:1.00:2	0/1:0,67:33:67:1.00:2	./.
chr11	33065394	rs1064005	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,30:32:52:0.577:2	0/1:17,16:32:33:0.485:2	./.	0/1:2,72:32:74:0.973:2	0/1:28,26:31:54:0.481:2	./.	0/1:33,32:32:65:0.492:2	./.	0/1:53,29:32:82:0.354:2	0/1:0,40:32:40:1.00:2	./.
chr11	33076191	rs2273544	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,30:30:44:0.682:2	0/1:10,12:28:22:0.545:2	0/1:0,9:31:9:1.00:2	0/1:2,51:30:53:0.962:2	0/1:2,43:30:45:0.956:2	0/1:23,21:30:44:0.477:2	0/1:28,12:30:40:0.300:2	0/1:37,17:30:54:0.315:2	0/1:0,53:32:53:1.00:2	0/1:1,26:30:27:0.963:2	0/1:0,49:30:49:1.00:2
chr11	33079580	rs2273549	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,21:32:50:0.420:2	0/1:31,41:32:72:0.569:2	./.	0/1:47,21:33:68:0.309:2	0/1:36,17:33:53:0.321:2	./.	0/1:32,25:33:57:0.439:2
chr11	33087551	rs200877599	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,17:13:101:0.168:2	./.	0/1:86,21:11:108:0.196:2	./.	0/1:46,11:19:57:0.193:2	0/1:83,15:14:99:0.153:2
chr11	33094059	rs118146715	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,56:31:108:0.519:2	./.	./.	./.	./.	./.	./.	./.
chr11	33123824	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:33:118:0.034:2	./.	./.	./.	./.
chr11	33129997	rs11605353	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,6:33:29:0.207:2	0/1:9,5:32:14:0.357:2	./.	0/1:2,25:30:27:0.926:2	0/1:13,13:30:26:0.500:2	0/1:37,3:31:40:0.075:2	0/1:13,12:32:25:0.480:2	0/1:25,6:33:31:0.194:2	0/1:32,9:32:41:0.220:2	./.	./.
chr11	33350173	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,3:33:37:0.081:2	./.
chr11	33564123	rs2076623	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:27,28:32:55:0.509:2	0/1:13,21:31:34:0.618:2	./.	./.	0/1:1,46:32:47:0.979:2	0/1:35,27:31:62:0.435:2	0/1:0,51:32:51:1.00:2	0/1:38,32:32:70:0.457:2	0/1:31,27:34:58:0.466:2	./.	0/1:32,22:33:55:0.407:2
chr11	33566507	rs117590358	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,49:30:83:0.590:2	./.	./.	./.	./.	./.	./.
chr11	33581306	rs2281380	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,71:31:171:0.415:2	./.	0/1:99,77:32:176:0.438:2	./.	./.	./.	./.
chr11	33596277	rs139772715	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,43:31:100:0.430:2	./.	./.	./.	./.	./.	./.
chr11	33604885	rs2273117	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,13:33:26:0.500:2	0/1:5,5:32:10:0.500:2	./.	./.	0/1:26,19:32:45:0.422:2	0/1:21,26:32:47:0.553:2	0/1:33,16:33:49:0.327:2	0/1:32,28:33:60:0.467:2	0/1:30,15:32:45:0.333:2	./.	0/1:15,11:30:26:0.423:2
chr11	33604960	rs2273115	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,10:32:22:0.455:2	0/1:5,4:31:9:0.444:2	./.	./.	0/1:20,21:29:41:0.512:2	0/1:16,14:30:30:0.467:2	0/1:27,18:28:45:0.400:2	0/1:30,31:30:61:0.508:2	0/1:28,22:31:50:0.440:2	./.	0/1:12,18:31:30:0.600:2
chr11	33631423	rs2076622	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,8:31:34:0.235:2	./.	0/1:16,11:31:27:0.407:2	./.	./.	./.	./.
chr11	33640104	rs768474	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,35:30:71:0.493:2	0/1:29,25:30:54:0.463:2	./.	0/1:21,26:29:47:0.553:2	0/1:2,41:29:43:0.953:2	0/1:33,40:30:73:0.548:2	0/1:0,65:29:65:1.00:2	0/1:67,48:29:116:0.417:2	0/1:0,86:31:86:1.00:2	./.	0/1:43,58:28:101:0.574:2
chr11	33667333	rs1033543	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:56,52:30:108:0.481:2	0/1:32,34:30:66:0.515:2	./.	0/1:79,83:30:162:0.512:2	0/1:0,155:31:157:1.00:2	0/1:76,69:31:146:0.476:2	0/1:0,123:31:123:1.00:2	0/1:84,88:30:172:0.512:2	0/1:1,148:31:149:0.993:2	./.	0/1:77,69:31:146:0.473:2
chr11	33680371	rs12280103	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,43:29:88:0.489:2	./.	0/1:55,56:30:112:0.505:2	./.	./.	./.	./.
chr11	33689541	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:33:6:0.667:2	./.	./.	./.	./.
chr11	33773161	rs7479064	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,11:32:11:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,21:31:21:1.00:2	0/1:1,11:31:12:0.917:2	0/1:0,28:33:28:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,31:32:31:1.00:2
chr11	33775982	rs2272065	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,35:32:37:0.946:2	0/1:0,32:32:32:1.00:2	0/1:0,13:33:13:1.00:2	0/1:34,48:33:82:0.585:2	./.	0/1:34,33:32:67:0.493:2	0/1:0,44:33:44:1.00:2	0/1:0,69:32:69:1.00:2	0/1:19,30:33:49:0.612:2	0/1:9,26:31:35:0.743:2	./.
chr11	33777334	rs1402954	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,9:31:12:0.750:2	0/1:103,66:31:169:0.391:2	./.	./.	./.	./.	./.	./.	./.
chr11	33881016	rs3740617	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,120:32:121:0.992:2	0/1:0,49:32:49:1.00:2	0/1:0,7:31:7:1.00:2	0/1:1,127:32:128:0.992:2	./.	0/1:68,86:32:154:0.558:2	0/1:92,76:33:168:0.452:2	0/1:74,87:33:161:0.540:2	0/1:69,71:33:140:0.507:2	0/1:0,109:32:109:1.00:2	0/1:72,69:32:141:0.489:2
chr11	33886294	rs2038602	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,148:30:148:1.00:2	0/1:63,80:30:143:0.559:2	0/1:78,77:30:155:0.497:2	0/1:60,77:29:137:0.562:2	0/1:63,56:30:119:0.471:2	./.	0/1:39,32:29:72:0.451:2
chr11	34093269	rs191903758	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,23:29:46:0.500:2	./.
chr11	34097908	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:31:127:0.031:2	./.	./.	./.
chr11	34129779	rs140188192	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,8:32:33:0.242:2	./.
chr11	34130342	rs11552143	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,80:30:152:0.526:2	./.	0/1:72,70:30:142:0.493:2	0/1:62,79:29:142:0.560:2
chr11	34152939	rs2957516	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,143:32:143:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,189:32:189:1.00:2	0/1:0,193:32:193:1.00:2	0/1:0,192:32:192:1.00:2	0/1:1,193:32:195:0.995:2	0/1:0,193:32:194:1.00:2	0/1:0,184:33:184:1.00:2	0/1:1,190:33:191:0.995:2	0/1:1,190:32:191:0.995:2
chr11	34154641	rs2957518	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,2:29:2:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,52:32:52:1.00:2	0/1:38,30:31:68:0.441:2	0/1:0,55:33:55:1.00:2	0/1:31,14:32:45:0.311:2	0/1:24,17:32:41:0.415:2
chr11	34165079	rs72910804	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,13:31:33:0.394:2	./.	./.	./.	./.	./.
chr11	34378381	rs1925368	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:35,22:33:57:0.386:2	0/1:17,7:33:24:0.292:2	0/1:4,9:33:13:0.692:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	34482908	rs769217	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:31:12:0.417:2	./.	./.	0/1:64,57:31:121:0.471:2	./.	./.	./.	0/1:33,37:33:70:0.529:2	./.
chr11	34502345	rs2231828	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,115:30:116:0.991:2	0/1:0,70:29:70:1.00:2	./.	0/1:0,103:30:103:1.00:2	0/1:55,60:29:115:0.522:2	./.	0/1:57,41:30:98:0.418:2	0/1:65,58:29:123:0.472:2	./.	./.	0/1:90,84:29:174:0.483:2
chr11	34511541	rs2231825	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,96:32:96:1.00:2	0/1:1,44:32:45:0.978:2	./.	0/1:1,116:32:117:0.991:2	0/1:55,43:32:98:0.439:2	./.	0/1:76,48:32:124:0.387:2	0/1:81,69:32:150:0.460:2	./.	./.	0/1:82,71:31:154:0.464:2
chr11	34668143	rs2281910	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:31:5:0.800:2	0/1:38,46:31:84:0.548:2	./.	0/1:47,34:30:81:0.420:2	./.	./.	./.	0/1:41,43:31:84:0.512:2	./.
chr11	34668175	rs9804460	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,23:33:63:0.365:2	./.	./.
chr11	34678435	rs435537	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,13:29:13:1.00:2	0/1:0,7:32:7:1.00:2	./.	0/1:0,11:32:11:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,18:31:18:1.00:2
chr11	34680400	rs286891	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,64:31:66:0.970:2	./.	./.
chr11	34904298	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,5:27:192:0.026:2	./.	./.	./.
chr11	34909926	rs1571133	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,21:32:49:0.429:2	0/1:13,9:33:22:0.409:2	./.	0/1:0,31:33:31:1.00:2	0/1:24,13:33:37:0.351:2	0/1:38,20:32:58:0.345:2	0/1:19,17:32:36:0.472:2	0/1:30,24:31:54:0.444:2	./.	0/1:0,28:32:28:1.00:2	0/1:28,21:31:49:0.429:2
chr11	34910397	rs1977420	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,22:30:43:0.512:2	./.	0/1:16,9:29:25:0.360:2	./.	0/1:18,16:31:34:0.471:2	./.	0/1:20,3:32:23:0.130:2	./.
chr11	34916657	rs61734605	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,13:33:38:0.342:2	0/1:13,15:32:28:0.536:2	./.	0/1:24,9:32:33:0.273:2	0/1:17,16:30:33:0.485:2	./.	0/1:17,16:32:33:0.485:2	./.	./.	0/1:20,19:33:39:0.487:2	0/1:40,23:32:63:0.365:2
chr11	34937813	rs2956114	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,28:31:46:0.609:2	./.	0/1:26,37:31:63:0.587:2	./.	0/1:25,19:31:44:0.432:2	./.	0/1:9,10:31:19:0.526:2	./.
chr11	34937931	rs2956111	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:32:5:0.800:2	./.	./.	./.	./.	./.
chr11	34938265	rs2956109	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,20:30:37:0.541:2	0/1:7,11:32:18:0.611:2	./.	0/1:0,83:32:83:1.00:2	0/1:22,17:31:39:0.436:2	0/1:26,32:32:58:0.552:2	0/1:20,18:30:38:0.474:2	0/1:28,39:31:67:0.582:2	./.	0/1:0,46:32:46:1.00:2	0/1:27,25:32:52:0.481:2
chr11	34969112	rs11539202	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:40,36:34:76:0.474:2	0/1:12,11:32:23:0.478:2	./.	0/1:71,58:32:129:0.450:2	0/1:47,38:32:85:0.447:2	./.	0/1:76,55:33:131:0.420:2	./.	./.	0/1:58,41:32:99:0.414:2	0/1:77,37:32:114:0.325:2
chr11	34991727	rs497582	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,23:33:50:0.460:2	0/1:25,5:32:30:0.167:2	./.	0/1:0,88:33:88:1.00:2	0/1:14,25:32:39:0.641:2	0/1:0,49:32:49:1.00:2	0/1:29,41:32:70:0.586:2	0/1:2,75:32:77:0.974:2	./.	0/1:0,49:33:49:1.00:2	0/1:0,92:33:92:1.00:2
chr11	34999745	rs10768108	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:53,39:33:92:0.424:2	0/1:28,30:32:58:0.517:2	./.	0/1:0,79:32:80:1.00:2	0/1:37,27:32:64:0.422:2	0/1:49,45:31:94:0.479:2	0/1:40,29:32:69:0.420:2	0/1:1,111:33:112:0.991:2	./.	0/1:0,83:33:83:1.00:2	0/1:1,102:33:103:0.990:2
chr11	35201842	rs1071695	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:70,83:31:153:0.542:2	0/1:47,30:31:77:0.390:2	0/1:10,6:32:16:0.375:2	./.	./.	0/1:5,182:31:187:0.973:2	0/1:97,77:32:174:0.443:2	0/1:100,85:31:185:0.459:2	./.	./.	./.
chr11	35226155	rs9666607	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,17:33:44:0.386:2	0/1:21,14:33:35:0.400:2	0/1:0,8:34:8:1.00:2	0/1:42,25:33:67:0.373:2	./.	0/1:27,24:33:51:0.471:2	0/1:0,26:32:26:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,73:34:73:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,75:33:75:1.00:2
chr11	35227697	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:34:138:0.029:2	./.	./.	./.	./.	./.
chr11	35227726	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:32:140:0.029:2	./.	./.
chr11	35229673	rs1467558	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:32:75:1.00:2	0/1:0,43:32:44:1.00:2	0/1:0,14:32:14:1.00:2	0/1:1,76:32:77:0.987:2	0/1:0,53:32:53:1.00:2	0/1:0,85:31:86:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,77:33:77:1.00:2	0/1:39,35:32:74:0.473:2	0/1:0,85:32:85:1.00:2
chr11	35308369	rs1042113	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,156:32:156:1.00:2	./.	0/1:85,87:31:172:0.506:2
chr11	35327748	rs752949	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,46:33:47:0.979:2	./.	0/1:29,34:32:63:0.540:2
chr11	35456061	rs61736408	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,4:31:8:0.500:2	0/1:40,27:31:67:0.403:2	0/1:33,31:31:64:0.484:2	./.	./.	./.	./.	./.	0/1:33,38:31:71:0.535:2
chr11	35456153	rs35216474	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,11:32:21:0.524:2	0/1:76,73:33:149:0.490:2	0/1:89,95:31:184:0.516:2	./.	./.	./.	./.	./.	0/1:74,67:33:141:0.475:2
chr11	35456267	rs111324432	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,6:36:126:0.048:2	./.	./.
chr11	35463134	rs141335779	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,57:31:96:0.594:2
chr11	35641312	rs3740799	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,5:32:6:0.833:2	./.	./.
chr11	35827958	rs61881297	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,68:32:163:0.420:2	./.	0/1:75,75:32:150:0.500:2	./.
chr11	36103228	rs1138807	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:80,56:27:136:0.412:2	0/1:42,23:29:65:0.354:2	./.	./.	./.	./.	0/1:121,76:28:197:0.386:2	./.	./.	./.	0/1:67,56:29:124:0.455:2
chr11	36248854	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,15:11:69:0.217:2	./.	./.	./.	./.	./.	./.	./.
chr11	36422701	rs78731804	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,47:32:90:0.522:2	./.	0/1:31,22:32:53:0.415:2	./.
chr11	36422792	rs330261	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,28:30:29:0.966:2	0/1:0,17:31:17:1.00:2	0/1:0,4:27:4:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,42:30:42:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,42:30:44:1.00:2
chr11	36472800	rs3740958	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:60,58:33:118:0.492:2	0/1:45,37:32:82:0.451:2	0/1:17,13:33:30:0.433:2	./.	./.	./.	0/1:78,99:33:178:0.559:2	./.	0/1:86,100:34:186:0.538:2	0/1:79,80:33:159:0.503:2	./.
chr11	36484167	rs11033639	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,51:31:117:0.436:2	./.	./.	./.	./.	0/1:29,40:30:69:0.580:2
chr11	36484208	rs514352	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:29:50:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,12:29:12:1.00:2	0/1:0,58:29:58:1.00:2	0/1:0,83:28:83:1.00:2	0/1:0,96:28:96:1.00:2	0/1:0,57:29:57:1.00:2	0/1:0,77:28:77:1.00:2	0/1:0,70:31:70:1.00:2	0/1:0,54:28:54:1.00:2	0/1:0,52:29:52:1.00:2
chr11	36512152	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,4:32:65:0.062:2	./.	./.	./.	./.	./.	./.
chr11	36512156	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,4:30:65:0.062:2	./.	./.	./.	./.	./.	./.
chr11	36512196	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,4:28:52:0.077:2	./.	./.	./.	./.	./.	./.
chr11	36595600	rs3740955	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:17,33:29:50:0.660:2	0/1:10,16:29:26:0.615:2	0/1:0,4:31:4:1.00:2	./.	0/1:35,36:28:71:0.507:2	0/1:26,33:28:59:0.559:2	0/1:47,37:29:84:0.440:2	0/1:26,45:29:71:0.634:2	0/1:29,21:30:50:0.420:2	0/1:18,22:29:40:0.550:2	./.
chr11	36596151	rs199474679	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:32:123:0.033:2	./.	./.
chr11	36597313	rs2227973	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:23,35:31:58:0.603:2	0/1:17,13:32:30:0.433:2	./.	./.	./.	./.	0/1:26,20:32:46:0.435:2	./.	./.	0/1:28,28:32:56:0.500:2	./.
chr11	36597607	rs368073575	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,16:33:44:0.364:2	./.
chr11	36597734	rs1980131	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,21:31:49:0.429:2	./.	./.	./.
chr11	36599069	rs4151040	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,44:32:113:0.389:2	./.	./.	./.
chr11	36600232	rs4151045	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,84:32:84:1.00:2	./.	./.	./.
chr11	36600513	.	C	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,12:16:72:0.167:2	0/1:37,9:14:46:0.196:2	./.	0/1:70,8:17:78:0.103:2	0/1:45,10:17:55:0.182:2	0/1:55,12:16:67:0.179:2
chr11	36601170	rs1056403	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,19:29:39:0.487:2	0/1:17,7:29:24:0.292:2	./.	./.	0/1:28,17:30:45:0.378:2	0/1:21,22:30:43:0.512:2	0/1:23,17:30:40:0.425:2	0/1:26,19:26:45:0.422:2	0/1:20,22:29:42:0.524:2	0/1:22,11:26:33:0.333:2	./.
chr11	36669639	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:34:66:0.061:2
chr11	40137543	rs2953310	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,105:32:105:1.00:2	0/1:2,96:32:98:0.980:2	./.	0/1:64,60:32:124:0.484:2	./.	0/1:90,53:32:143:0.371:2	./.	0/1:104,86:32:190:0.453:2	0/1:107,76:33:183:0.415:2	./.	./.
chr11	40137835	rs144974170	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,81:31:172:0.471:2	./.	./.	./.	./.	./.
chr11	43345037	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,3:34:46:0.065:2	./.	./.
chr11	43356853	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:31:67:0.060:2	./.
chr11	43356888	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:31:44:0.091:2	./.
chr11	43472746	rs11551137	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	43702530	rs56168061	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:18,11:31:29:0.379:2	0/1:5,4:30:9:0.444:2	./.	./.	./.	./.	./.	./.	./.	0/1:22,8:30:30:0.267:2	./.
chr11	43876698	rs11555762	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:54,28:33:82:0.341:2	0/1:25,16:32:41:0.390:2	0/1:0,8:31:8:1.00:2	./.	0/1:13,11:30:24:0.458:2	0/1:37,45:31:82:0.549:2	./.	0/1:34,23:31:57:0.404:2	0/1:0,65:33:65:1.00:2	./.	0/1:0,109:32:109:1.00:2
chr11	43905533	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:32:131:0.031:2	./.
chr11	43908230	rs7101434	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,22:31:56:0.393:2	./.	./.	./.	./.	./.	./.
chr11	43911365	rs2434478	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:30:49:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,3:28:3:1.00:2	0/1:0,44:29:44:1.00:2	0/1:0,33:28:33:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,61:30:61:1.00:2	0/1:0,46:29:46:1.00:2	0/1:0,44:27:44:1.00:2
chr11	43923096	rs2271815	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,32:32:75:0.427:2	./.	./.	./.	./.	./.	./.	./.
chr11	43923166	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:33:81:0.049:2	./.
chr11	43940602	rs1130290	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:38,32:32:70:0.457:2	0/1:16,15:33:31:0.484:2	0/1:0,11:32:11:1.00:2	./.	0/1:0,57:31:57:1.00:2	0/1:62,28:31:90:0.311:2	0/1:37,30:33:67:0.448:2	0/1:56,39:33:95:0.411:2	./.	./.	./.
chr11	43940644	rs1048928	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:29,34:30:63:0.540:2	0/1:21,16:31:37:0.432:2	./.	0/1:0,74:29:74:1.00:2	./.	0/1:45,64:30:109:0.587:2	./.	0/1:47,49:29:96:0.510:2	0/1:0,91:30:91:1.00:2	0/1:51,31:30:82:0.378:2	0/1:58,31:29:89:0.348:2
chr11	43964842	rs7077	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:26:3:1.00:2	./.	0/1:0,3:24:3:1.00:2	./.	./.	./.
chr11	44080210	rs2074051	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,27:29:67:0.403:2	0/1:0,37:29:37:1.00:2	0/1:0,42:28:42:1.00:2	0/1:0,37:29:37:1.00:2	0/1:47,25:28:72:0.347:2	0/1:0,54:28:54:1.00:2	0/1:31,29:29:60:0.483:2	0/1:0,49:28:49:1.00:2
chr11	44089352	rs33952257	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:31:7:0.714:2	./.	./.	0/1:36,46:30:82:0.561:2	0/1:23,35:30:58:0.603:2	0/1:45,42:30:87:0.483:2	0/1:38,47:31:85:0.553:2	0/1:32,29:30:61:0.475:2	0/1:54,34:31:88:0.386:2
chr11	44092880	rs2074039	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,27:32:47:0.574:2	0/1:20,27:31:47:0.574:2	0/1:21,23:31:44:0.523:2	./.	./.	./.	./.	./.
chr11	44096238	rs178521	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,37:30:71:0.521:2	0/1:19,19:30:38:0.500:2	0/1:1,4:29:5:0.800:2	0/1:57,29:29:86:0.337:2	0/1:0,42:30:42:1.00:2	0/1:0,65:30:65:1.00:2	0/1:0,50:30:50:1.00:2	0/1:38,45:30:83:0.542:2	0/1:39,37:31:77:0.487:2	0/1:15,28:31:43:0.651:2	0/1:0,65:31:65:1.00:2
chr11	44101118	rs7950395	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,86:32:194:0.443:2	0/1:96,92:31:188:0.489:2	0/1:107,87:31:194:0.448:2	./.	./.	./.	./.	./.
chr11	44104981	rs3107275	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,7:32:10:0.700:2	0/1:51,50:32:101:0.495:2	0/1:43,39:31:82:0.476:2	0/1:0,67:32:67:1.00:2	0/1:57,30:32:87:0.345:2	0/1:58,42:32:100:0.420:2	0/1:42,36:32:78:0.462:2	0/1:36,30:32:66:0.455:2	0/1:0,105:32:105:1.00:2
chr11	44129526	rs35455466	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,56:30:137:0.409:2	./.
chr11	44151625	rs34084767	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,46:31:131:0.351:2	./.
chr11	44286566	rs3802805	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:20,26:32:46:0.565:2	0/1:15,15:32:30:0.500:2	./.	./.	./.	./.	0/1:17,20:31:37:0.541:2	./.	0/1:17,17:33:34:0.500:2	./.	./.
chr11	44289071	rs12419361	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,18:30:34:0.529:2	0/1:17,6:31:23:0.261:2	0/1:0,3:31:3:1.00:2	0/1:37,31:31:68:0.456:2	./.	0/1:36,24:31:60:0.400:2	./.	./.	./.	./.	./.
chr11	44296946	rs11037928	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,60:30:130:0.462:2	0/1:79,70:31:149:0.470:2	./.	./.	./.	./.
chr11	44297054	rs10769028	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,101:29:102:0.990:2	0/1:0,64:28:64:1.00:2	0/1:0,15:30:15:1.00:2	0/1:1,130:29:131:0.992:2	0/1:0,70:28:70:1.00:2	0/1:0,143:29:143:1.00:2	0/1:0,108:28:108:1.00:2	0/1:0,140:29:140:1.00:2	0/1:0,87:29:87:1.00:2	0/1:0,108:29:108:1.00:2	0/1:0,120:28:120:1.00:2
chr11	44331309	rs12421995	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.
chr11	44331509	rs3824915	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:29:87:1.00:2	0/1:2,56:28:58:0.966:2	0/1:2,4:29:6:0.667:2	0/1:6,106:29:112:0.946:2	0/1:79,52:28:131:0.397:2	./.	0/1:63,62:29:125:0.496:2	./.	0/1:52,52:29:104:0.500:2	0/1:44,67:28:112:0.604:2	./.
chr11	44636833	rs2303865	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,183:31:185:0.989:2	./.	./.	./.	./.	./.	./.	./.
chr11	44636839	rs883752	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:80,76:30:157:0.487:2	0/1:40,36:30:76:0.474:2	./.	./.	./.	./.	./.	./.	./.	0/1:108,73:30:181:0.403:2	./.
chr11	44639711	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:34:98:0.041:2	./.	./.	./.	./.	./.
chr11	44640268	rs1139971	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,33:28:34:0.971:2	0/1:2,34:29:36:0.944:2	./.	0/1:0,58:30:58:1.00:2	./.	0/1:51,21:29:72:0.292:2	./.	./.	0/1:36,31:31:67:0.463:2	0/1:0,33:28:33:1.00:2	0/1:0,46:28:46:1.00:2
chr11	44640640	rs7107335	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:35,17:33:52:0.327:2	0/1:7,14:32:21:0.667:2	./.	0/1:31,40:33:71:0.563:2	./.	./.	./.	./.	./.	0/1:30,23:32:53:0.434:2	0/1:30,30:32:60:0.500:2
chr11	44931425	rs148562544	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,7:30:20:0.350:2	./.
chr11	44940828	rs2291334	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,57:32:58:0.983:2	0/1:0,57:32:57:1.00:2	0/1:4,4:31:8:0.500:2	0/1:1,94:31:95:0.989:2	./.	0/1:66,50:31:116:0.431:2	0/1:71,56:31:127:0.441:2	./.	0/1:43,40:32:83:0.482:2	0/1:56,34:31:90:0.378:2	./.
chr11	44941412	rs146383863	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,46:32:108:0.426:2	./.	./.	./.	./.	./.
chr11	44956438	rs145296568	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,19:30:44:0.432:2	./.
chr11	45203848	rs1078931	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:21,18:32:39:0.462:2	0/1:22,9:32:31:0.290:2	./.	./.	./.	./.	0/1:0,55:32:55:1.00:2	./.	./.	./.	./.
chr11	45204411	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,4:31:62:0.065:2	./.	./.	./.	./.	./.	./.
chr11	45307610	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,11:32:23:0.478:2	./.	./.	./.	./.	./.	./.	./.
chr11	45307725	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.
chr11	45671427	rs148878468	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,29:31:55:0.527:2	0/1:17,13:31:30:0.433:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	45672261	rs3802762	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,75:30:78:0.962:2	0/1:0,60:29:60:1.00:2	0/1:16,14:27:30:0.467:2	0/1:2,106:30:108:0.981:2	0/1:1,133:30:134:0.993:2	0/1:1,139:30:140:0.993:2	0/1:85,76:29:161:0.472:2	0/1:1,152:30:153:0.993:2	0/1:1,106:31:107:0.991:2	0/1:0,91:30:91:1.00:2	0/1:0,74:30:74:1.00:2
chr11	45832509	rs7130656	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:25:5:0.600:2	./.	./.	./.	./.	./.	0/1:19,17:30:36:0.472:2	./.	./.
chr11	45923547	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:139,6:33:145:0.041:2	./.	./.	./.	./.	./.	./.
chr11	45923564	rs373364397	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:151,8:29:159:0.050:2	./.	./.	./.	./.	./.	./.
chr11	45926728	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:32:68:0.059:2	./.	./.
chr11	45935384	rs1132349	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,39:28:40:0.975:2	0/1:0,30:28:30:1.00:2	0/1:0,4:28:4:1.00:2	0/1:0,54:28:54:1.00:2	0/1:1,60:27:61:0.984:2	0/1:0,60:28:60:1.00:2	0/1:2,39:27:41:0.951:2	0/1:0,68:27:68:1.00:2	0/1:33,27:29:60:0.450:2	0/1:0,27:27:27:1.00:2	0/1:0,29:27:29:1.00:2
chr11	45937267	rs10742772	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,60:31:61:0.984:2	0/1:0,41:31:41:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,82:30:82:1.00:2	0/1:0,192:30:192:1.00:2	0/1:0,91:30:91:1.00:2	0/1:0,186:31:186:1.00:2	0/1:0,160:31:160:1.00:2	0/1:0,106:31:106:1.00:2	0/1:0,87:31:87:1.00:2	0/1:0,73:30:73:1.00:2
chr11	45937306	rs11553094	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,20:30:44:0.455:2	./.	./.	./.	./.	0/1:106,88:31:194:0.454:2	./.	./.	./.
chr11	45944484	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.
chr11	45946365	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.	./.	./.	./.
chr11	45949534	rs939105	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,126:31:126:1.00:2	0/1:4,76:32:80:0.950:2	0/1:0,22:30:22:1.00:2	0/1:0,182:31:182:1.00:2	0/1:1,179:30:180:0.994:2	0/1:0,185:31:185:1.00:2	0/1:4,190:30:195:0.979:2	0/1:3,184:31:187:0.984:2	0/1:94,100:32:194:0.515:2	0/1:0,141:31:142:1.00:2	0/1:0,157:31:157:1.00:2
chr11	45949746	rs11038714	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,11:28:36:0.306:2	./.	./.	./.
chr11	45975130	rs3736508	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,5:33:111:0.045:2	./.	./.	./.	./.
chr11	45986887	rs188195248	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:122,13:15:135:0.096:2	./.	./.	./.	0/1:129,18:12:147:0.122:2	0/1:124,18:16:142:0.127:2	./.	0/1:109,17:13:126:0.135:2	./.	0/1:104,17:14:121:0.140:2	0/1:104,15:14:119:0.126:2
chr11	46321561	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,80:33:184:0.437:2	./.	./.	./.
chr11	46334239	rs2288249	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,19:30:33:0.576:2	./.	./.	0/1:23,29:31:52:0.558:2	./.	./.	./.
chr11	46339011	rs35652107	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,31:29:50:0.620:2	./.	./.	0/1:33,25:30:58:0.431:2	./.	./.	./.
chr11	46342232	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,3:34:51:0.059:2	./.
chr11	46388276	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,5:26:6:0.833:2	./.
chr11	46389249	rs146222671	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.	./.	./.	./.
chr11	46391503	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,7:31:185:0.038:2	./.	./.	./.
chr11	46391536	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,6:32:187:0.032:2	./.	./.	./.
chr11	46396020	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,9:17:32:0.281:2	0/1:13,7:14:20:0.350:2	./.	./.	./.	./.
chr11	46403649	rs20542	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:20,19:29:39:0.487:2	0/1:9,14:30:23:0.609:2	./.	0/1:39,34:29:73:0.466:2	./.	./.	./.	./.	0/1:16,26:31:42:0.619:2	0/1:32,22:29:54:0.407:2	./.
chr11	46406767	rs2067482	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,86:30:195:0.441:2	./.	./.	0/1:110,80:30:190:0.421:2	./.	./.	./.
chr11	46564421	rs142012115	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,18:32:36:0.514:2	./.
chr11	46702920	rs4268467	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,168:32:169:0.994:2	0/1:0,166:33:166:1.00:2	0/1:0,36:33:36:1.00:2	0/1:0,168:33:168:1.00:2	0/1:0,188:32:188:1.00:2	0/1:1,182:32:184:0.995:2	0/1:0,189:33:189:1.00:2	0/1:0,192:32:192:1.00:2	0/1:0,190:34:190:1.00:2	0/1:0,160:32:160:1.00:2	0/1:0,165:33:165:1.00:2
chr11	46745003	rs5896	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,35:31:68:0.515:2	./.	./.	./.	./.	./.	0/1:20,43:31:63:0.683:2
chr11	46784666	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,4:34:106:0.038:2	./.	./.	./.	./.	./.	./.
chr11	46799779	rs200464289	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,13:15:104:0.126:2
chr11	46889607	rs111426027	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,48:29:103:0.466:2	./.	./.	./.
chr11	46890165	rs3816614	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,21:32:21:1.00:2	0/1:0,14:32:14:1.00:2	./.	0/1:0,55:32:55:1.00:2	0/1:26,25:31:51:0.490:2	0/1:0,36:32:36:1.00:2	0/1:1,62:32:63:0.984:2	0/1:0,45:31:45:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,35:33:35:1.00:2	0/1:20,11:33:31:0.355:2
chr11	46890179	rs150734530	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,21:33:46:0.457:2	./.
chr11	46890197	rs2290883	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,37:31:71:0.521:2	./.	./.	./.	./.	./.	0/1:16,25:31:41:0.610:2
chr11	46893108	rs2306029	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,30:28:68:0.441:2	0/1:18,15:30:33:0.455:2	0/1:9,4:29:13:0.308:2	0/1:41,38:28:79:0.481:2	./.	0/1:0,67:29:67:1.00:2	0/1:3,94:28:97:0.969:2	0/1:67,39:30:106:0.368:2	0/1:40,35:30:75:0.467:2	0/1:42,32:27:74:0.432:2	0/1:21,28:27:49:0.571:2
chr11	46895005	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,17:31:41:0.415:2	./.
chr11	46897446	rs2306033	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,77:31:166:0.464:2	./.	./.	./.	./.	./.	0/1:77,52:31:129:0.403:2
chr11	46898113	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,12:32:106:0.113:2	./.	./.	./.	./.
chr11	46898771	rs6485702	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:30:72:1.00:2	0/1:2,54:30:56:0.964:2	0/1:7,12:31:19:0.632:2	0/1:1,107:30:108:0.991:2	./.	0/1:0,113:30:113:1.00:2	0/1:9,125:31:134:0.933:2	0/1:75,54:30:129:0.419:2	0/1:0,115:31:116:1.00:2	0/1:1,81:30:82:0.988:2	0/1:51,55:30:106:0.519:2
chr11	46914583	rs10838631	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:32:24:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,30:32:30:1.00:2
chr11	46914598	rs10769215	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:28:22:1.00:2	0/1:0,11:28:11:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,35:29:35:1.00:2	0/1:0,31:29:31:1.00:2	0/1:0,32:28:32:1.00:2	0/1:0,46:29:46:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,32:29:32:1.00:2
chr11	46916179	rs72897663	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:33:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	0/1:56,38:32:94:0.404:2
chr11	47185680	rs11039114	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:46,32:31:78:0.410:2	0/1:27,17:32:44:0.386:2	./.	0/1:0,104:31:104:1.00:2	./.	./.	./.	./.	0/1:67,48:31:115:0.417:2	0/1:0,101:31:101:1.00:2	./.
chr11	47187067	rs7117346	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,32:27:35:0.914:2	./.	./.	./.	./.	./.	0/1:26,15:29:41:0.366:2	./.
chr11	47188314	rs4752820	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:32:36:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,40:30:40:1.00:2	0/1:0,77:30:77:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,30:30:30:1.00:2
chr11	47188411	rs3740691	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,33:31:51:0.647:2	0/1:12,15:31:27:0.556:2	0/1:5,8:30:13:0.615:2	0/1:2,39:30:41:0.951:2	0/1:24,35:29:59:0.593:2	0/1:0,62:31:62:1.00:2	./.	0/1:13,29:30:42:0.690:2	0/1:25,31:30:56:0.554:2	0/1:0,44:29:45:1.00:2	0/1:31,20:31:51:0.392:2
chr11	47199523	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:32:38:0.079:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	47238522	rs326212	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:31:52:1.00:2	0/1:0,35:29:35:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,89:30:89:1.00:2	0/1:0,91:30:91:1.00:2	0/1:0,108:30:108:1.00:2	0/1:0,99:31:99:1.00:2	0/1:0,125:30:125:1.00:2	0/1:0,102:31:102:1.00:2	0/1:0,99:30:99:1.00:2	0/1:0,101:29:101:1.00:2
chr11	47259507	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,6:30:179:0.034:2	./.	./.	./.	./.	./.
chr11	47259668	rs326222	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,94:33:95:0.989:2	0/1:0,64:33:64:1.00:2	0/1:8,3:32:11:0.273:2	0/1:0,116:33:116:1.00:2	./.	0/1:62,50:33:112:0.446:2	0/1:1,103:33:104:0.990:2	0/1:70,69:33:139:0.496:2	0/1:0,119:34:119:1.00:2	0/1:56,47:33:103:0.456:2	0/1:0,103:32:103:1.00:2
chr11	47261762	rs145420520	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,83:31:149:0.557:2	./.	./.	./.	./.	./.	./.
chr11	47267079	rs10838677	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,36:31:82:0.439:2	./.
chr11	47270255	rs2167079	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:32:11:0.545:2	./.	0/1:0,83:32:83:1.00:2	0/1:34,39:31:73:0.534:2	./.	0/1:54,62:32:116:0.534:2	./.	0/1:49,38:31:87:0.437:2	./.
chr11	47280762	rs11039155	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,31:32:69:0.449:2	./.	./.	./.	./.	./.	./.
chr11	47282024	rs2279238	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,34:30:70:0.486:2	./.	./.	./.	./.	./.	./.
chr11	47283563	rs191811598	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,55:31:99:0.556:2	./.	./.	./.	./.	./.	./.	./.
chr11	47298360	rs326214	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:31:77:1.00:2	0/1:1,47:31:48:0.979:2	0/1:10,9:28:19:0.474:2	0/1:0,147:31:147:1.00:2	./.	0/1:79,39:31:118:0.331:2	0/1:9,121:31:130:0.931:2	0/1:64,49:31:113:0.434:2	0/1:0,152:32:152:1.00:2	0/1:59,44:31:103:0.427:2	0/1:2,111:32:113:0.982:2
chr11	47303275	rs326217	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:30:10:0.500:2	./.	./.	./.	0/1:1,76:29:77:0.987:2	0/1:40,44:29:84:0.524:2	0/1:45,38:30:83:0.458:2	./.	0/1:35,43:29:78:0.551:2
chr11	47306090	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,11:31:23:0.478:2
chr11	47306585	rs1051006	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,13:31:42:0.310:2	./.	./.	./.	./.	./.	./.
chr11	47306628	rs3736101	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,30:33:53:0.566:2	0/1:21,24:30:45:0.533:2	./.	0/1:33,32:32:65:0.492:2	./.	./.	./.
chr11	47306630	rs35233100	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,19:28:45:0.422:2	./.	./.	./.	./.	./.
chr11	47330524	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,12:33:183:0.066:2	./.
chr11	47331116	rs1017594	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,84:32:84:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,145:32:145:1.00:2	0/1:0,176:33:176:1.00:2	0/1:0,145:33:145:1.00:2	0/1:0,180:33:180:1.00:2	0/1:0,148:33:148:1.00:2	0/1:0,158:34:158:1.00:2	0/1:0,116:33:116:1.00:2	0/1:0,160:33:160:1.00:2
chr11	47346038	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:90,4:32:94:0.043:2	./.	./.	./.	./.	./.	./.
chr11	47353447	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:31:111:0.036:2	./.	./.	./.
chr11	47354787	rs1052373	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:31:13:0.538:2	./.	0/1:0,115:30:116:1.00:2	0/1:61,37:30:98:0.378:2	./.	0/1:111,58:31:169:0.343:2	./.	0/1:41,37:31:78:0.474:2	./.
chr11	47355246	rs372003333	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,41:32:91:0.451:2	./.
chr11	47358997	rs3729953	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,33:29:64:0.516:2	./.
chr11	47362759	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,4:31:86:0.047:2	./.	./.	./.	./.	./.	./.	./.
chr11	47364657	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:30:58:0.069:2
chr11	47364662	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:32:82:0.049:2	./.	./.	./.	./.	./.
chr11	47368153	rs3729991	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,24:31:61:0.393:2	./.
chr11	47369443	rs11570058	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	0/1:31,16:32:47:0.340:2	0/1:23,33:32:56:0.589:2	./.	0/1:29,32:32:61:0.525:2	./.	./.	0/1:26,19:32:45:0.422:2
chr11	47370041	rs3729989	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,14:29:14:1.00:2	./.	0/1:81,71:29:152:0.467:2	0/1:65,45:29:110:0.409:2	./.	0/1:64,80:29:144:0.556:2	./.	./.	0/1:32,34:29:66:0.515:2
chr11	47371333	rs201098973	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,11:31:38:0.289:2	./.	./.	./.	./.	./.
chr11	47371598	rs3729986	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,30:31:76:0.395:2	0/1:20,28:31:48:0.583:2	./.	./.	./.	./.	./.	./.	0/1:30,47:32:77:0.610:2	./.	./.
chr11	47377030	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:32:111:0.036:2	./.	./.	./.	./.
chr11	47431703	rs61897432	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.	0/1:47,34:28:81:0.420:2	./.	./.	0/1:47,43:29:90:0.478:2	./.	./.	0/1:27,23:30:50:0.460:2
chr11	47431728	rs2010519	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:32:39:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,3:32:3:1.00:2	0/1:1,51:31:52:0.981:2	0/1:0,36:31:36:1.00:2	0/1:0,46:31:46:1.00:2	0/1:1,41:31:42:0.976:2	0/1:0,49:31:49:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,37:33:37:1.00:2	0/1:0,28:32:28:1.00:2
chr11	47431764	rs35741412	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	47434986	rs2293576	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,12:31:45:0.267:2	0/1:6,7:31:13:0.538:2	./.	0/1:27,27:30:54:0.500:2	0/1:11,26:30:37:0.703:2	0/1:22,9:28:31:0.290:2	./.	./.	./.	0/1:14,17:29:31:0.548:2	0/1:12,11:27:23:0.478:2
chr11	47436368	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:31:36:0.111:2	./.	./.	./.	./.
chr11	47440758	rs2293579	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,20:31:21:0.952:2	0/1:0,21:32:21:1.00:2	./.	0/1:30,19:32:49:0.388:2	0/1:39,27:31:66:0.409:2	0/1:18,21:32:39:0.538:2	./.	./.	0/1:30,14:32:44:0.318:2	0/1:13,14:32:27:0.519:2	0/1:12,16:33:28:0.571:2
chr11	47446704	rs199670547	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,16:14:163:0.099:2
chr11	47460306	rs7126210	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,37:32:37:1.00:2	0/1:0,24:32:24:1.00:2	./.	0/1:0,68:32:68:1.00:2	0/1:39,35:32:74:0.473:2	0/1:0,80:33:80:1.00:2	0/1:0,45:32:45:1.00:2	0/1:45,35:32:80:0.438:2	0/1:0,51:33:51:1.00:2	0/1:0,41:32:41:1.00:2	0/1:27,25:33:52:0.481:2
chr11	47463172	rs56040810	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,53:31:93:0.576:2	./.	./.
chr11	47463220	rs45603036	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,23:32:23:1.00:2	./.	0/1:57,72:31:129:0.558:2	./.	./.	0/1:75,69:32:144:0.479:2	./.	./.	0/1:48,30:31:78:0.385:2
chr11	47469439	rs7111873	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,33:29:35:0.943:2	0/1:0,28:29:28:1.00:2	./.	0/1:1,44:29:45:0.978:2	0/1:32,23:29:55:0.418:2	0/1:0,31:27:31:1.00:2	0/1:2,25:28:27:0.926:2	0/1:13,17:29:30:0.567:2	0/1:0,33:29:33:1.00:2	0/1:0,27:30:27:1.00:2	0/1:21,13:29:34:0.382:2
chr11	47505975	rs373407024	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:32:108:0.037:2	./.	./.	./.
chr11	47587452	rs11537751	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,21:31:33:0.636:2	0/1:9,8:32:17:0.471:2	./.	./.	./.	./.	./.	./.	0/1:34,29:32:63:0.460:2	./.	./.
chr11	47640429	rs1064608	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:28:14:0.571:2	./.	0/1:9,14:29:23:0.609:2	0/1:0,9:30:9:1.00:2	0/1:10,3:28:13:0.231:2	0/1:8,5:29:13:0.385:2	./.	./.
chr11	47701528	rs12286721	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:22,25:32:47:0.532:2	0/1:18,20:32:38:0.526:2	./.	0/1:52,39:30:91:0.429:2	./.	0/1:21,23:31:44:0.523:2	0/1:1,56:31:57:0.982:2	0/1:46,49:30:95:0.516:2	0/1:0,58:32:58:1.00:2	0/1:32,30:32:62:0.484:2	./.
chr11	47711913	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:32:60:0.067:2	./.	./.	./.
chr11	47712213	rs7941404	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,55:31:123:0.447:2	./.	./.	./.	./.	./.
chr11	47721104	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,4:31:46:0.087:2	./.	./.	./.	./.	./.	./.	./.
chr11	47745589	rs34242224	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	0/1:7,14:32:21:0.667:2	./.	./.	0/1:15,26:32:41:0.634:2	./.	./.	./.
chr11	47826090	rs11039402	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,46:32:101:0.455:2	0/1:32,39:32:71:0.549:2	0/1:0,13:32:13:1.00:2	0/1:81,89:33:170:0.524:2	0/1:0,110:32:110:1.00:2	0/1:75,77:32:152:0.507:2	./.	0/1:95,78:32:173:0.451:2	./.	0/1:78,63:32:141:0.447:2	0/1:1,173:32:174:0.994:2
chr11	47834592	rs7110289	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:31:38:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,29:32:29:1.00:2
chr11	47857253	rs3816605	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,40:27:90:0.471:2	0/1:75,55:27:130:0.423:2	0/1:1,25:28:28:0.962:2	0/1:59,46:26:110:0.438:2	0/1:3,75:24:84:0.962:2	0/1:60,39:24:104:0.394:2	./.	0/1:62,46:24:113:0.426:2	./.	./.	./.
chr11	47857258	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:91,16:14:108:0.150:2	./.	./.	0/1:99,22:14:122:0.182:2	./.	0/1:95,20:13:115:0.174:2	0/1:85,17:10:102:0.167:2	0/1:106,23:12:130:0.178:2	./.	0/1:75,28:12:103:0.272:2	0/1:88,20:11:108:0.185:2
chr11	47857265	rs180675017	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:98,12:16:110:0.109:2	./.	./.	./.	0/1:95,11:14:106:0.104:2	./.	./.	./.	./.	0/1:85,21:18:106:0.198:2	0/1:88,19:14:107:0.178:2
chr11	48145247	rs2270992	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:30:5:0.800:2	0/1:27,18:28:45:0.400:2	0/1:25,23:29:48:0.479:2	0/1:0,29:30:29:1.00:2	0/1:0,36:30:36:1.00:2	0/1:37,25:30:62:0.403:2	0/1:36,36:31:72:0.500:2	0/1:0,25:31:25:1.00:2	0/1:32,20:31:53:0.385:2
chr11	48145344	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,24:29:53:0.453:2	./.
chr11	48145375	rs1566734	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,56:33:56:1.00:2	0/1:0,26:33:26:1.00:2	./.	./.	0/1:29,30:32:59:0.508:2	./.	./.	./.	0/1:36,34:34:70:0.486:2	./.	0/1:41,36:33:77:0.468:2
chr11	48146622	rs1503185	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,29:31:30:0.967:2	0/1:0,26:32:26:1.00:2	./.	./.	0/1:26,17:31:43:0.395:2	./.	./.	./.	0/1:9,19:32:28:0.679:2	./.	0/1:23,22:32:45:0.489:2
chr11	48153040	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:30:29:0.138:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	48166267	rs4752904	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,6:30:15:0.400:2	0/1:53,33:29:86:0.384:2	0/1:21,37:28:58:0.638:2	0/1:0,105:29:105:1.00:2	0/1:0,84:29:85:1.00:2	0/1:74,53:29:127:0.417:2	0/1:46,49:30:95:0.516:2	0/1:32,37:29:69:0.536:2	0/1:51,55:29:107:0.519:2
chr11	48166642	rs34300475	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,10:31:180:0.056:2	./.	./.	./.
chr11	48188872	rs12809012	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:31:14:0.286:2	./.	./.	./.	./.	0/1:36,44:30:80:0.550:2	./.	./.	./.
chr11	48238421	rs10769329	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,151:29:151:1.00:2	0/1:0,97:29:97:1.00:2	0/1:0,23:28:23:1.00:2	0/1:1,192:29:193:0.995:2	0/1:0,191:28:191:1.00:2	0/1:0,189:29:189:1.00:2	0/1:1,193:29:194:0.995:2	0/1:0,187:28:187:1.00:2	0/1:0,188:29:188:1.00:2	0/1:0,173:29:173:1.00:2	0/1:0,190:29:190:1.00:2
chr11	48238549	rs11606506	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:88,64:30:152:0.421:2	0/1:84,43:31:127:0.339:2	./.	./.	0/1:106,87:29:193:0.451:2	./.	./.	./.	0/1:103,87:29:191:0.458:2	0/1:97,71:30:168:0.423:2	0/1:115,77:30:192:0.401:2
chr11	48238773	rs61731416	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,54:30:115:0.470:2	./.	./.	./.	./.	./.	./.
chr11	48239071	rs12292056	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,15:31:32:0.469:2	./.	./.	./.	./.	0/1:112,84:31:196:0.429:2	./.	./.	./.
chr11	48239182	rs7130086	C	A,T	.	PASS	AC=4,1;AF=0.267,0.067;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	./.	0/2:32:107:0.419:2	0/1:31:84:0.452:2	./.	./.	./.	0/1:34:80:0.363:2	0/1:32:76:0.395:2	0/1:33:94:0.383:2
chr11	48285663	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:31:148:0.027:2	./.	./.	./.
chr11	48285839	rs141012609	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,56:32:120:0.467:2
chr11	48285842	rs1503193	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:32:74:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,130:33:130:1.00:2	0/1:0,98:32:98:1.00:2	0/1:0,114:32:114:1.00:2	0/1:0,103:32:103:1.00:2	0/1:0,133:32:133:1.00:2	0/1:0,114:32:114:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,119:32:119:1.00:2
chr11	48285856	rs10838850	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,29:30:72:0.403:2	0/1:37,21:30:59:0.362:2	0/1:3,12:30:15:0.800:2	0/1:0,130:29:130:1.00:2	0/1:61,54:31:115:0.470:2	0/1:0,121:29:121:1.00:2	0/1:0,121:30:121:1.00:2	0/1:70,72:29:143:0.507:2	0/1:68,54:29:122:0.443:2	0/1:56,29:31:85:0.341:2	0/1:61,64:29:125:0.512:2
chr11	48286213	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:32:170:0.024:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	48286231	rs10838851	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:92,78:32:170:0.459:2	0/1:39,45:32:84:0.536:2	0/1:14,7:30:21:0.333:2	0/1:0,157:31:158:1.00:2	0/1:74,44:31:118:0.373:2	0/1:0,135:31:135:1.00:2	0/1:0,103:31:103:1.00:2	0/1:88,54:31:142:0.380:2	0/1:91,80:31:171:0.468:2	0/1:80,53:31:133:0.398:2	0/1:95,73:31:168:0.435:2
chr11	48286234	rs61732322	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,7:29:21:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	48286256	rs10838852	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,6:32:14:0.429:2	0/1:79,54:32:134:0.406:2	0/1:54,25:32:79:0.316:2	0/1:0,103:31:103:1.00:2	0/1:0,73:32:73:1.00:2	0/1:76,35:32:111:0.315:2	0/1:70,58:31:128:0.453:2	0/1:67,43:31:110:0.391:2	0/1:86,60:32:147:0.411:2
chr11	48328121	rs35930119	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,48:29:86:0.558:2	./.	./.	./.
chr11	48328644	rs753095	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,101:32:105:0.962:2	0/1:0,65:32:65:1.00:2	0/1:3,11:32:14:0.786:2	0/1:59,65:32:124:0.524:2	0/1:58,51:32:109:0.468:2	./.	./.	0/1:83,62:32:145:0.428:2	0/1:55,73:33:128:0.570:2	0/1:46,48:32:94:0.511:2	0/1:74,48:33:122:0.393:2
chr11	48346588	rs75900655	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:31:115:0.035:2
chr11	48346604	rs75647397	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:102,8:33:110:0.073:2	0/1:60,9:33:69:0.130:2	./.	0/1:91,12:33:103:0.117:2	./.	0/1:93,8:31:101:0.079:2	0/1:66,10:32:76:0.132:2	0/1:94,11:33:105:0.105:2	0/1:100,4:32:104:0.038:2	0/1:88,6:33:94:0.064:2	0/1:120,9:31:129:0.070:2
chr11	48346615	rs73463988	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:102,12:29:114:0.105:2	0/1:66,15:31:81:0.185:2	0/1:7,3:30:10:0.300:2	0/1:102,28:30:130:0.215:2	0/1:86,9:28:95:0.095:2	0/1:106,23:31:129:0.178:2	0/1:74,14:31:88:0.159:2	0/1:108,21:30:130:0.163:2	0/1:105,20:32:125:0.160:2	0/1:87,17:32:105:0.163:2	0/1:141,21:31:162:0.130:2
chr11	48346681	rs78490540	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:130,63:33:193:0.326:2	0/1:103,35:32:138:0.254:2	0/1:21,10:32:31:0.323:2	0/1:138,54:32:193:0.281:2	0/1:164,33:31:197:0.168:2	0/1:129,67:32:196:0.342:2	0/1:151,39:32:190:0.205:2	0/1:136,56:32:192:0.292:2	0/1:120,64:33:184:0.348:2	0/1:127,57:32:184:0.310:2	0/1:132,54:33:186:0.290:2
chr11	48346729	rs73463990	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:123,65:32:188:0.346:2	0/1:90,37:32:127:0.291:2	0/1:25,11:32:36:0.306:2	0/1:103,59:32:162:0.364:2	0/1:127,40:32:167:0.240:2	0/1:87,64:32:151:0.424:2	0/1:140,46:33:186:0.247:2	0/1:100,52:32:152:0.342:2	0/1:96,63:34:159:0.396:2	0/1:101,64:32:165:0.388:2	0/1:117,76:31:193:0.394:2
chr11	48346791	rs73463994	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:122,62:32:184:0.337:2	0/1:58,34:31:92:0.370:2	0/1:15,6:31:21:0.286:2	0/1:129,65:31:194:0.335:2	0/1:85,41:31:126:0.325:2	0/1:117,71:31:188:0.378:2	0/1:123,41:31:164:0.250:2	0/1:116,57:31:173:0.329:2	0/1:104,79:32:183:0.432:2	0/1:101,56:31:157:0.357:2	0/1:126,58:32:184:0.315:2
chr11	48346822	rs73463997	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:113,64:33:177:0.362:2	0/1:70,43:32:113:0.381:2	0/1:26,8:33:34:0.235:2	0/1:124,63:33:187:0.337:2	0/1:111,75:32:186:0.403:2	0/1:123,66:31:189:0.349:2	0/1:131,60:32:191:0.314:2	0/1:128,62:33:190:0.326:2	0/1:95,82:33:177:0.463:2	0/1:109,76:32:185:0.411:2	0/1:125,60:33:185:0.324:2
chr11	48346843	rs73463998	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:108,63:31:172:0.368:2	0/1:78,37:32:115:0.322:2	0/1:32,8:30:40:0.200:2	0/1:119,62:31:181:0.343:2	0/1:107,76:30:183:0.415:2	0/1:126,58:31:184:0.315:2	0/1:124,60:31:184:0.326:2	0/1:126,57:31:183:0.311:2	0/1:105,67:32:172:0.390:2	0/1:109,71:31:180:0.394:2	0/1:125,49:31:174:0.282:2
chr11	48346916	rs77069283	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:110,24:32:134:0.179:2	0/1:85,27:32:112:0.241:2	0/1:31,3:33:34:0.088:2	0/1:108,40:32:148:0.270:2	0/1:117,24:30:141:0.170:2	0/1:123,22:31:145:0.152:2	0/1:125,22:32:147:0.150:2	0/1:131,27:32:158:0.171:2	0/1:126,17:34:143:0.119:2	0/1:111,25:33:136:0.184:2	0/1:122,19:33:141:0.135:2
chr11	48346924	rs72911454	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:105,14:31:119:0.118:2	0/1:81,25:32:106:0.236:2	./.	0/1:111,27:32:138:0.196:2	0/1:131,15:29:146:0.103:2	0/1:127,19:31:146:0.130:2	0/1:126,20:32:146:0.137:2	0/1:140,20:33:160:0.125:2	0/1:133,13:33:146:0.089:2	0/1:105,13:32:118:0.110:2	0/1:117,12:31:129:0.093:2
chr11	48346932	rs80285195	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:108,12:29:120:0.100:2	0/1:82,21:31:103:0.204:2	./.	0/1:100,24:30:125:0.194:2	0/1:131,14:28:145:0.097:2	0/1:129,19:30:148:0.128:2	0/1:128,19:30:147:0.129:2	0/1:133,19:30:152:0.125:2	0/1:117,12:30:129:0.093:2	0/1:101,11:29:112:0.098:2	0/1:114,9:31:123:0.073:2
chr11	48346999	rs72473367	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:123,14:32:137:0.102:2	0/1:89,10:32:99:0.101:2	./.	0/1:125,5:29:130:0.038:2	0/1:129,9:32:138:0.065:2	0/1:121,13:28:134:0.097:2	./.	0/1:136,7:29:143:0.049:2	0/1:120,5:31:125:0.040:2	0/1:114,8:31:122:0.066:2	0/1:115,13:31:128:0.102:2
chr11	48347014	rs72473368	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:116,15:29:131:0.115:2	0/1:79,11:31:90:0.122:2	./.	0/1:119,7:29:127:0.056:2	0/1:129,13:30:143:0.092:2	0/1:120,22:30:142:0.155:2	0/1:122,14:28:136:0.103:2	0/1:137,12:29:149:0.081:2	0/1:115,10:30:125:0.080:2	0/1:113,12:31:125:0.096:2	0/1:106,17:31:124:0.138:2
chr11	48347023	rs67077733	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:116,18:29:134:0.134:2	0/1:80,14:30:94:0.149:2	0/1:20,4:33:24:0.167:2	0/1:124,9:28:134:0.068:2	0/1:120,22:28:142:0.155:2	0/1:103,35:30:138:0.254:2	0/1:124,16:29:142:0.114:2	0/1:127,16:28:144:0.112:2	0/1:100,20:30:120:0.167:2	0/1:108,23:30:131:0.176:2	0/1:110,25:29:135:0.185:2
chr11	48347067	rs73464001	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:140,15:31:155:0.097:2	0/1:94,6:32:100:0.060:2	0/1:33,7:30:40:0.175:2	0/1:135,11:31:146:0.075:2	0/1:138,22:31:160:0.138:2	0/1:131,32:30:163:0.196:2	0/1:136,15:32:151:0.099:2	0/1:138,13:32:151:0.086:2	0/1:115,25:32:140:0.179:2	0/1:128,24:33:152:0.158:2	0/1:114,24:32:138:0.174:2
chr11	48347082	rs148047717	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,6:32:143:0.042:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	48347100	rs73465905	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:133,13:31:146:0.089:2	0/1:127,5:32:132:0.038:2	0/1:36,6:31:42:0.143:2	0/1:129,8:32:137:0.058:2	0/1:142,14:30:156:0.090:2	0/1:137,20:30:157:0.127:2	0/1:144,5:30:149:0.034:2	0/1:142,9:30:151:0.060:2	0/1:109,19:32:128:0.148:2	0/1:126,21:32:147:0.143:2	0/1:132,20:31:152:0.132:2
chr11	48347140	rs10838874	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:67,81:32:148:0.547:2	0/1:64,69:32:133:0.519:2	0/1:18,21:32:39:0.538:2	0/1:127,4:32:131:0.031:2	0/1:75,72:31:147:0.490:2	./.	0/1:149,8:29:157:0.051:2	0/1:72,77:32:149:0.517:2	0/1:50,59:33:109:0.541:2	0/1:75,56:33:131:0.427:2	0/1:62,73:33:135:0.541:2
chr11	48347142	rs79891698	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:143,9:31:152:0.059:2	./.	./.	0/1:152,6:31:158:0.038:2	0/1:114,4:31:118:0.034:2	0/1:132,6:29:138:0.043:2	0/1:136,8:32:144:0.056:2
chr11	48347144	rs79124801	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:147,7:30:154:0.045:2	./.	./.	0/1:155,6:33:161:0.037:2	0/1:113,4:32:117:0.034:2	0/1:131,6:27:138:0.044:2	0/1:135,8:32:143:0.056:2
chr11	48347267	rs73465910	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:119,56:29:175:0.320:2	0/1:115,54:28:170:0.320:2	0/1:30,18:29:48:0.375:2	0/1:130,52:29:182:0.286:2	0/1:128,58:28:186:0.312:2	0/1:129,40:29:169:0.237:2	0/1:131,58:28:189:0.307:2	0/1:135,46:28:181:0.254:2	0/1:127,51:28:178:0.287:2	0/1:116,61:28:177:0.345:2	0/1:125,56:28:181:0.309:2
chr11	48347306	rs73465911	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:124,29:31:153:0.190:2	0/1:110,29:32:139:0.209:2	0/1:32,6:31:38:0.158:2	0/1:143,22:30:165:0.133:2	0/1:137,33:31:170:0.194:2	0/1:142,23:31:165:0.139:2	0/1:134,25:31:159:0.157:2	0/1:153,22:31:175:0.126:2	0/1:136,31:32:167:0.186:2	0/1:127,36:31:163:0.221:2	0/1:136,31:31:167:0.186:2
chr11	48347342	rs76958755	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,8:30:105:0.076:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	48347419	rs73465913	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,4:32:48:0.083:2	./.	./.	0/1:46,6:27:53:0.115:2	0/1:24,3:33:27:0.111:2	0/1:49,5:32:54:0.093:2	./.	0/1:40,4:28:44:0.091:2	0/1:44,6:33:50:0.120:2	0/1:32,3:32:35:0.086:2	0/1:69,7:29:76:0.092:2
chr11	48366958	rs76319939	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,13:31:68:0.191:2	0/1:41,21:33:62:0.339:2	0/1:3,3:32:6:0.500:2	0/1:55,19:32:74:0.257:2	0/1:30,10:33:40:0.250:2	0/1:52,34:31:86:0.395:2	0/1:22,5:28:27:0.185:2	0/1:54,24:33:78:0.308:2	0/1:66,15:33:81:0.185:2	0/1:34,12:33:46:0.261:2	0/1:57,27:31:84:0.321:2
chr11	48366971	rs377042306	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,11:32:73:0.151:2	0/1:45,18:32:63:0.286:2	0/1:4,4:32:8:0.500:2	0/1:56,22:32:78:0.282:2	0/1:43,9:32:52:0.173:2	0/1:55,30:32:85:0.353:2	0/1:21,5:31:26:0.192:2	0/1:66,26:32:92:0.283:2	0/1:71,16:32:87:0.184:2	0/1:40,10:32:50:0.200:2	0/1:65,24:31:89:0.270:2
chr11	48366972	rs75621879	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,11:31:73:0.153:2	0/1:45,18:32:63:0.286:2	0/1:4,4:33:8:0.500:2	0/1:55,22:32:77:0.286:2	0/1:44,9:32:53:0.170:2	0/1:53,30:31:83:0.361:2	0/1:25,5:31:30:0.167:2	0/1:66,26:33:92:0.283:2	0/1:72,16:32:88:0.182:2	0/1:40,10:33:50:0.200:2	0/1:64,24:32:88:0.273:2
chr11	48367073	rs7941588	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,44:33:69:0.638:2	0/1:10,29:33:39:0.744:2	0/1:0,8:34:8:1.00:2	0/1:28,73:32:101:0.723:2	0/1:0,74:32:74:1.00:2	0/1:1,81:32:82:0.988:2	0/1:0,62:32:62:1.00:2	0/1:1,86:33:87:0.989:2	0/1:0,81:33:81:1.00:2	0/1:1,49:33:50:0.980:2	0/1:0,85:33:85:1.00:2
chr11	48367097	rs73453179	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,10:34:56:0.179:2	0/1:19,8:32:27:0.296:2	0/1:4,3:31:7:0.429:2	0/1:71,21:34:92:0.228:2	0/1:76,12:32:88:0.136:2	0/1:70,11:30:81:0.136:2	0/1:55,7:31:62:0.113:2	0/1:71,10:34:81:0.123:2	0/1:55,13:35:68:0.191:2	0/1:44,5:34:49:0.102:2	0/1:72,7:33:79:0.089:2
chr11	48367195	rs79063955	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,4:29:53:0.075:2	./.	./.	./.	0/1:44,5:32:49:0.102:2	./.	0/1:45,4:30:49:0.082:2
chr11	48367249	rs74815769	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,12:32:73:0.164:2	0/1:24,14:32:38:0.368:2	0/1:4,4:32:8:0.500:2	0/1:68,26:31:95:0.277:2	0/1:62,25:31:87:0.287:2	0/1:51,43:31:94:0.457:2	0/1:52,17:32:69:0.246:2	0/1:58,27:31:85:0.318:2	0/1:63,28:32:91:0.308:2	0/1:61,33:32:94:0.351:2	0/1:68,24:31:92:0.261:2
chr11	48367252	rs76287086	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,11:29:74:0.149:2	0/1:27,13:33:40:0.325:2	0/1:4,4:31:8:0.500:2	0/1:72,26:31:98:0.265:2	0/1:61,25:32:86:0.291:2	0/1:51,43:32:94:0.457:2	0/1:53,17:32:70:0.243:2	0/1:62,27:31:89:0.303:2	0/1:65,28:32:93:0.301:2	0/1:62,33:31:95:0.347:2	0/1:68,24:32:92:0.261:2
chr11	48367311	rs73453180	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,44:29:135:0.326:2	0/1:41,33:30:74:0.446:2	0/1:7,9:31:16:0.563:2	0/1:99,64:29:163:0.393:2	0/1:88,38:29:126:0.302:2	0/1:86,73:28:159:0.459:2	0/1:98,48:30:146:0.329:2	0/1:110,74:30:184:0.402:2	0/1:104,60:30:164:0.366:2	0/1:96,60:29:156:0.385:2	0/1:105,65:30:170:0.382:2
chr11	48367363	rs73453183	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,30:32:112:0.268:2	0/1:33,22:32:55:0.400:2	0/1:6,6:31:12:0.500:2	0/1:106,56:31:162:0.346:2	0/1:81,25:31:106:0.236:2	0/1:93,35:31:128:0.273:2	0/1:110,40:31:150:0.267:2	0/1:120,52:31:173:0.302:2	0/1:103,49:32:152:0.322:2	0/1:117,39:31:156:0.250:2	0/1:104,42:32:147:0.288:2
chr11	48367387	rs78788561	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,17:31:89:0.191:2	0/1:40,16:32:56:0.286:2	0/1:9,3:33:12:0.250:2	0/1:90,32:30:122:0.262:2	0/1:82,13:31:95:0.137:2	0/1:93,16:31:109:0.147:2	0/1:103,22:29:125:0.176:2	0/1:106,30:30:136:0.221:2	0/1:99,23:32:122:0.189:2	0/1:115,22:31:137:0.161:2	0/1:100,23:31:123:0.187:2
chr11	48367419	rs77576379	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:33:83:0.048:2	./.	./.	0/1:92,4:33:96:0.042:2	./.	./.
chr11	48373748	rs73453188	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:97,19:32:116:0.164:2	0/1:53,23:32:76:0.303:2	0/1:16,4:32:20:0.200:2	0/1:88,41:33:129:0.318:2	0/1:75,22:32:97:0.227:2	0/1:116,47:31:164:0.288:2	0/1:80,21:31:101:0.208:2	0/1:103,36:31:140:0.259:2	0/1:131,32:32:163:0.196:2	0/1:72,29:31:102:0.287:2	0/1:111,48:32:159:0.302:2
chr11	48373770	rs73453191	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:120,17:32:137:0.124:2	0/1:62,22:31:85:0.262:2	./.	0/1:111,35:32:146:0.240:2	0/1:86,18:32:104:0.173:2	0/1:125,42:31:167:0.251:2	0/1:88,19:31:107:0.178:2	0/1:121,32:31:154:0.209:2	0/1:143,33:31:176:0.188:2	0/1:80,23:31:103:0.223:2	0/1:130,41:32:171:0.240:2
chr11	48373797	rs72896825	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,9:30:120:0.075:2	0/1:93,7:28:100:0.070:2	0/1:129,7:31:136:0.051:2	./.	./.	0/1:132,6:31:139:0.043:2	0/1:76,5:26:81:0.062:2	0/1:116,6:28:122:0.049:2
chr11	48373885	rs76292854	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:68,27:32:96:0.284:2	0/1:32,7:32:39:0.179:2	0/1:7,4:33:11:0.364:2	0/1:84,17:32:102:0.168:2	0/1:66,14:32:80:0.175:2	0/1:94,19:32:114:0.168:2	0/1:75,22:32:97:0.227:2	0/1:115,22:30:137:0.161:2	0/1:99,12:30:111:0.108:2	0/1:53,22:30:75:0.293:2	0/1:94,23:29:117:0.197:2
chr11	48373900	rs77877396	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,31:32:93:0.333:2	0/1:35,8:30:43:0.186:2	0/1:7,4:32:11:0.364:2	0/1:88,17:31:105:0.162:2	0/1:61,17:32:78:0.218:2	0/1:91,22:32:113:0.195:2	0/1:71,24:32:95:0.253:2	0/1:110,22:31:132:0.167:2	0/1:91,15:31:106:0.142:2	0/1:54,24:31:78:0.308:2	0/1:96,25:30:121:0.207:2
chr11	48373936	rs76304554	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,20:32:66:0.303:2	0/1:27,9:30:36:0.250:2	0/1:4,3:31:7:0.429:2	0/1:78,15:32:93:0.161:2	0/1:38,14:32:52:0.269:2	0/1:75,25:32:100:0.250:2	0/1:48,22:31:70:0.314:2	0/1:71,21:31:93:0.228:2	0/1:68,14:31:82:0.171:2	0/1:47,18:33:65:0.277:2	0/1:75,23:30:98:0.235:2
chr11	48373946	rs12797020	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:34,21:30:55:0.382:2	0/1:23,7:32:30:0.233:2	./.	./.	0/1:34,13:32:47:0.277:2	./.	./.	./.	0/1:42,30:33:72:0.417:2	0/1:47,14:31:61:0.230:2	0/1:56,32:31:88:0.364:2
chr11	48373976	rs80225178	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,9:32:36:0.250:2	0/1:18,5:32:23:0.217:2	./.	0/1:46,5:32:51:0.098:2	0/1:20,5:32:25:0.200:2	0/1:35,12:31:47:0.255:2	0/1:22,11:32:33:0.333:2	0/1:30,7:32:37:0.189:2	0/1:33,7:30:40:0.175:2	0/1:34,7:32:41:0.171:2	0/1:41,13:29:54:0.241:2
chr11	48373986	rs12420054	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:25,6:31:31:0.194:2	0/1:17,5:30:22:0.227:2	./.	0/1:40,5:32:45:0.111:2	./.	0/1:30,9:30:39:0.231:2	0/1:18,9:30:27:0.333:2	0/1:27,7:31:34:0.206:2	0/1:27,6:27:33:0.182:2	0/1:24,7:32:31:0.226:2	0/1:33,12:29:45:0.267:2
chr11	48510344	rs147863961	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:117,4:34:121:0.033:2	./.	./.	./.	./.	./.	./.
chr11	48510479	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr11	48510654	rs7103557	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,20:32:20:1.00:2	0/1:69,49:33:118:0.415:2	0/1:55,61:32:116:0.526:2	0/1:0,109:32:109:1.00:2	0/1:2,95:32:97:0.979:2	0/1:2,111:32:113:0.982:2	0/1:86,67:33:153:0.438:2	0/1:53,85:32:138:0.616:2	0/1:80,80:32:160:0.500:2
chr11	48510777	rs7103992	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,25:31:27:0.926:2	0/1:95,82:31:177:0.463:2	0/1:70,90:31:160:0.563:2	0/1:2,147:31:149:0.987:2	0/1:2,154:32:156:0.987:2	0/1:2,135:31:137:0.985:2	0/1:97,94:32:191:0.492:2	0/1:89,78:31:167:0.467:2	0/1:90,81:32:171:0.474:2
chr11	48510803	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,5:32:157:0.032:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	48510919	rs7103932	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:188,4:32:192:0.021:2	./.	./.	./.	0/1:188,6:32:194:0.031:2	./.	./.	./.	0/1:188,6:33:194:0.031:2	0/1:185,4:32:189:0.021:2	./.
chr11	48510954	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.
chr11	48511050	rs76991989	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,60:31:151:0.397:2	./.	./.	./.	./.	./.	./.
chr11	49175427	rs199517010	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,5:30:156:0.032:2	./.	./.
chr11	49175475	rs137991256	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,10:30:33:0.303:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	49186274	rs61886492	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:68,66:31:135:0.493:2	0/1:48,36:31:84:0.429:2	./.	0/1:105,69:30:174:0.397:2	./.	./.	./.	./.	./.	./.	./.
chr11	49196490	rs202716	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,69:30:70:0.986:2	0/1:0,36:29:36:1.00:2	./.	0/1:127,24:29:151:0.159:2	./.	./.	./.	./.	0/1:95,34:30:129:0.264:2	0/1:123,21:30:144:0.146:2	./.
chr11	49197416	rs144950409	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,17:34:42:0.405:2	0/1:13,18:33:31:0.581:2	./.	./.	./.	./.	./.	./.	0/1:20,21:32:41:0.512:2	0/1:28,8:31:36:0.222:2	./.
chr11	49204732	rs199782232	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,4:30:113:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr11	49207315	rs182169	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:3,41:29:44:0.932:2	0/1:0,25:29:25:1.00:2	./.	0/1:64,16:28:80:0.200:2	./.	./.	./.	./.	0/1:66,24:30:90:0.267:2	0/1:33,14:30:47:0.298:2	./.
chr11	49207360	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,5:31:72:0.069:2	./.	./.	./.	./.	./.
chr11	49208267	rs75940285	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:129,61:32:191:0.321:2	0/1:90,54:32:144:0.375:2	0/1:17,8:32:25:0.320:2	0/1:137,61:32:198:0.308:2	./.	0/1:138,60:31:198:0.303:2	./.	0/1:167,30:31:197:0.152:2	0/1:152,47:33:199:0.236:2	0/1:132,27:32:159:0.170:2	0/1:158,35:32:194:0.181:2
chr11	49208319	rs79155991	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:76,39:30:115:0.339:2	0/1:70,26:32:96:0.271:2	0/1:16,7:28:23:0.304:2	0/1:99,25:31:124:0.202:2	./.	0/1:104,25:29:129:0.194:2	./.	0/1:125,12:31:137:0.088:2	0/1:112,9:30:122:0.074:2	0/1:105,21:31:126:0.167:2	0/1:96,16:31:113:0.143:2
chr11	49221885	rs202680	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,61:33:61:1.00:2	0/1:0,21:33:21:1.00:2	./.	0/1:30,24:32:54:0.444:2	./.	./.	./.	./.	0/1:57,32:33:89:0.360:2	0/1:48,25:33:73:0.342:2	./.
chr11	49227620	rs202676	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,13:32:27:0.481:2	0/1:4,8:33:12:0.667:2	./.	./.	./.	./.	./.	./.	0/1:21,21:33:42:0.500:2	0/1:18,12:33:30:0.400:2	./.
chr11	49974169	rs79794374	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,63:30:138:0.457:2	0/1:35,39:28:74:0.527:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	49974371	rs28662375	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:32:82:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,104:31:104:1.00:2	0/1:0,104:31:104:1.00:2	0/1:0,102:31:102:1.00:2	0/1:0,85:31:85:1.00:2	0/1:0,103:32:103:1.00:2	0/1:0,110:32:110:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,90:32:90:1.00:2
chr11	49974600	rs138466175	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:32:199:0.020:2	./.
chr11	49974670	rs16914589	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,92:32:180:0.511:2	0/1:67,48:31:115:0.417:2	./.	./.	./.	./.	./.	./.	0/1:91,84:32:175:0.480:2	0/1:81,84:32:165:0.509:2	./.
chr11	49974770	rs140572207	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,49:31:98:0.500:2
chr11	50003191	rs4598671	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:54,49:32:103:0.476:2	0/1:37,29:33:66:0.439:2	./.	0/1:50,59:32:109:0.541:2	0/1:2,50:32:52:0.962:2	0/1:49,42:32:91:0.462:2	0/1:36,22:32:58:0.379:2	0/1:37,44:32:81:0.543:2	0/1:54,37:33:91:0.407:2	./.	0/1:0,113:33:113:1.00:2
chr11	50003577	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:32:108:0.037:2
chr11	51411460	rs34285763	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,8:33:25:0.320:2	0/1:8,9:33:17:0.529:2	0/1:25,26:32:51:0.510:2	0/1:9,11:33:20:0.550:2	0/1:20,13:33:33:0.394:2	./.	0/1:15,15:29:30:0.500:2	0/1:37,26:32:64:0.413:2
chr11	51411510	rs74522421	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,25:31:55:0.455:2	./.
chr11	51411740	rs35083184	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,58:32:113:0.513:2	0/1:34,24:31:58:0.414:2	0/1:62,56:31:118:0.475:2	0/1:57,35:31:92:0.380:2	0/1:69,38:32:107:0.355:2	./.	0/1:46,38:32:84:0.452:2	0/1:56,49:32:105:0.467:2
chr11	51411914	rs61890334	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:55,65:33:120:0.542:2	0/1:33,35:33:68:0.515:2	./.	0/1:61,80:33:141:0.567:2	./.	./.	./.	./.	./.	./.	./.
chr11	51412123	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:32:165:0.024:2	./.
chr11	51412327	rs56302591	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,19:31:43:0.442:2	0/1:29,27:31:56:0.482:2	0/1:37,18:30:55:0.327:2	0/1:19,17:31:36:0.472:2	0/1:30,17:31:47:0.362:2	./.	0/1:20,29:32:49:0.592:2	0/1:34,30:32:64:0.469:2
chr11	51412353	rs61890335	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:28,20:33:48:0.417:2	0/1:10,13:31:23:0.565:2	./.	0/1:12,19:32:31:0.613:2	./.	./.	./.	./.	./.	./.	./.
chr11	51412379	rs10902343	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:13,23:32:36:0.639:2	0/1:10,8:32:18:0.444:2	./.	./.	0/1:9,14:32:23:0.609:2	./.	./.	./.	0/1:22,11:34:33:0.333:2	0/1:19,6:33:25:0.240:2	./.
chr11	51515460	rs11246606	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,125:32:125:1.00:2	0/1:0,56:32:56:1.00:2	./.	0/1:69,88:32:157:0.561:2	0/1:54,43:31:97:0.443:2	./.	./.	0/1:174,5:30:179:0.028:2	0/1:68,58:32:126:0.460:2	0/1:58,66:32:124:0.532:2	./.
chr11	51515546	rs61890419	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:77,63:31:140:0.450:2	0/1:45,33:31:78:0.423:2	./.	0/1:87,90:31:177:0.508:2	./.	./.	./.	./.	./.	./.	./.
chr11	51515596	rs61890420	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:77,52:33:129:0.403:2	0/1:46,29:32:75:0.387:2	./.	0/1:84,74:31:158:0.468:2	./.	./.	./.	./.	./.	./.	./.
chr11	51515640	rs74396937	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:63,72:30:135:0.533:2	0/1:38,43:28:81:0.531:2	./.	./.	0/1:91,82:30:173:0.474:2	./.	./.	0/1:185,5:28:190:0.026:2	0/1:102,73:31:175:0.417:2	0/1:74,63:29:137:0.460:2	./.
chr11	51515830	rs61890421	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:43,40:33:83:0.482:2	0/1:41,16:32:57:0.281:2	./.	0/1:53,47:32:100:0.470:2	./.	./.	./.	./.	./.	./.	./.
chr11	51515834	rs61890422	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:41,39:32:80:0.488:2	0/1:43,16:32:59:0.271:2	./.	0/1:53,44:31:97:0.454:2	./.	./.	./.	./.	./.	./.	./.
chr11	51515912	rs77689730	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:54,36:33:90:0.400:2	0/1:27,46:32:73:0.630:2	./.	./.	0/1:63,58:31:122:0.479:2	./.	./.	./.	0/1:70,74:33:144:0.514:2	0/1:58,50:32:109:0.463:2	./.
chr11	51516000	rs11246607	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,20:31:20:1.00:2	./.	./.	0/1:103,78:31:181:0.431:2	0/1:103,85:32:188:0.452:2	0/1:100,83:31:183:0.454:2	0/1:98,85:33:183:0.464:2	./.	0/1:88,82:32:170:0.482:2
chr11	51516036	rs11246608	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,18:30:18:1.00:2	./.	./.	0/1:89,56:30:145:0.386:2	0/1:93,84:31:177:0.475:2	0/1:93,72:31:165:0.436:2	0/1:89,73:31:162:0.451:2	./.	0/1:96,76:31:172:0.442:2
chr11	51516144	rs11246609	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,17:32:17:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,3:32:3:1.00:2	0/1:31,9:31:40:0.225:2	0/1:7,7:31:14:0.500:2	0/1:24,7:33:31:0.226:2	0/1:21,7:32:28:0.250:2	0/1:18,5:33:23:0.217:2	0/1:0,10:32:10:1.00:2	0/1:19,13:32:32:0.406:2	0/1:40,14:32:54:0.259:2
chr11	55029787	rs12799381	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,32:32:65:0.492:2	0/1:31,20:33:51:0.392:2	./.	0/1:27,17:33:44:0.386:2	0/1:36,29:32:65:0.446:2	./.	0/1:31,29:33:60:0.483:2	0/1:41,40:33:81:0.494:2
chr11	55032425	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,83:33:191:0.435:2
chr11	55032462	rs79623326	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:178,15:32:193:0.078:2	0/1:145,8:31:153:0.052:2	./.	0/1:184,10:32:194:0.052:2	./.	0/1:192,6:31:198:0.030:2	./.	0/1:184,10:31:194:0.052:2	0/1:188,8:32:196:0.041:2	./.	./.
chr11	55032490	rs201114836	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,7:32:193:0.036:2	./.	./.	./.	./.
chr11	55032500	rs141034048	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:179,14:34:193:0.073:2	0/1:159,9:32:168:0.054:2	./.	0/1:190,8:33:198:0.040:2	0/1:193,4:33:197:0.020:2	0/1:188,5:32:193:0.026:2	./.	./.	0/1:190,9:31:199:0.045:2	0/1:194,4:35:198:0.020:2	./.
chr11	55032582	rs61894887	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:4,181:33:185:0.978:2	0/1:2,183:32:185:0.989:2	./.	0/1:117,79:33:196:0.403:2	./.	./.	./.	./.	./.	./.	./.
chr11	55032663	rs200778682	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:129,5:30:134:0.037:2	./.	./.	./.	0/1:120,7:28:127:0.055:2	./.	./.	./.	0/1:140,10:33:150:0.067:2	0/1:132,5:32:137:0.036:2	0/1:176,6:30:182:0.033:2
chr11	55033084	rs17849542	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,16:32:37:0.432:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	55033110	rs7129272	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:19,107:32:126:0.849:2	0/1:20,66:32:86:0.767:2	./.	0/1:109,81:33:190:0.426:2	./.	./.	./.	./.	./.	./.	./.
chr11	55033115	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,76:32:192:0.396:2	./.	./.	./.
chr11	55033116	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,6:30:70:0.086:2	./.	./.	./.	0/1:190,5:31:195:0.026:2	./.	./.
chr11	55033141	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:87,4:32:91:0.044:2	./.	./.	./.	./.	./.	./.
chr11	55110941	rs147336887	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,5:32:168:0.030:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	55111013	rs74777917	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:165,17:31:182:0.093:2	0/1:128,9:32:137:0.066:2	./.	0/1:152,14:31:166:0.084:2	./.	./.	./.	./.	./.	./.	./.
chr11	55111045	rs79540892	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:162,8:34:170:0.047:2	0/1:145,6:34:151:0.040:2	./.	0/1:162,6:34:168:0.036:2	./.	./.	./.	./.	./.	./.	./.
chr11	55111222	rs7121804	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:87,86:31:173:0.497:2	0/1:85,60:31:145:0.414:2	./.	0/1:103,82:30:185:0.443:2	./.	./.	./.	./.	./.	./.	./.
chr11	55111238	rs11229158	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,42:31:42:1.00:2	./.	0/1:189,5:31:194:0.026:2	0/1:0,191:31:191:1.00:2	0/1:110,82:31:192:0.427:2	0/1:97,94:31:191:0.492:2	./.	./.	0/1:103,84:31:187:0.449:2
chr11	55111500	rs117538213	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,43:33:108:0.398:2	./.	./.
chr11	55111584	rs10896659	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	0/1:1,21:32:22:0.955:2	0/1:4,9:32:13:0.692:2	0/1:6,6:31:12:0.500:2	./.	./.	0/1:17,14:32:31:0.452:2
chr11	55135435	rs1425193	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,10:30:14:0.714:2	./.	./.	0/1:49,35:31:84:0.417:2	0/1:29,17:32:46:0.370:2	0/1:50,39:31:89:0.438:2	./.	./.	./.
chr11	55135566	rs142258292	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,33:30:62:0.532:2	0/1:14,23:32:37:0.622:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	55135689	rs61916184	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:49,34:31:83:0.410:2	0/1:34,41:31:75:0.547:2	./.	0/1:35,39:31:74:0.527:2	./.	./.	./.	./.	./.	./.	./.
chr11	55135722	rs200584338	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:31:131:0.031:2	./.	./.	./.	./.	./.
chr11	55136121	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:32:160:0.025:2	./.	./.
chr11	55136219	rs7927370	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:101,62:31:163:0.380:2	0/1:59,53:32:112:0.473:2	./.	0/1:107,69:31:176:0.392:2	./.	./.	./.	./.	./.	./.	./.
chr11	55321823	rs17581532	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:36,28:33:64:0.438:2	0/1:19,19:31:38:0.500:2	./.	0/1:36,36:32:72:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr11	55322099	rs17496724	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:16,13:29:29:0.448:2	0/1:15,8:32:23:0.348:2	./.	0/1:33,16:31:49:0.327:2	./.	./.	./.	./.	./.	./.	./.
chr11	55322211	rs9804659	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,7:33:8:0.875:2	./.	./.	0/1:37,20:32:57:0.351:2	0/1:16,17:33:33:0.515:2	0/1:16,19:31:35:0.543:2	./.	./.	./.
chr11	55322298	rs8181485	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:55,59:32:114:0.518:2	0/1:25,14:32:39:0.359:2	./.	./.	0/1:43,38:32:81:0.469:2	./.	./.	./.	0/1:65,59:33:124:0.476:2	0/1:47,57:32:105:0.548:2	./.
chr11	55322422	rs74331841	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:91,62:30:153:0.405:2	0/1:42,38:31:80:0.475:2	./.	0/1:101,76:30:177:0.429:2	./.	./.	./.	./.	./.	./.	./.
chr11	55322464	rs61919569	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:115,73:32:189:0.388:2	0/1:65,42:32:108:0.393:2	./.	0/1:105,90:32:195:0.462:2	./.	./.	./.	./.	./.	./.	./.
chr11	55322490	rs61919570	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:115,76:32:192:0.398:2	0/1:76,42:32:118:0.356:2	./.	0/1:101,92:32:193:0.477:2	./.	./.	./.	./.	./.	./.	./.
chr11	55322539	rs12790125	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,18:32:37:0.486:2	./.	./.	0/1:113,83:31:196:0.423:2	./.	./.	./.	./.	0/1:87,94:32:181:0.519:2
chr11	55322606	rs17581700	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:87,86:29:173:0.497:2	0/1:64,59:29:123:0.480:2	./.	0/1:81,72:29:153:0.471:2	./.	./.	./.	./.	./.	./.	./.
chr11	55322638	rs12225462	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:80,62:31:143:0.437:2	0/1:47,45:31:92:0.489:2	./.	./.	0/1:51,68:31:119:0.571:2	./.	./.	./.	0/1:76,95:32:171:0.556:2	0/1:80,73:31:153:0.477:2	./.
chr11	55339652	rs1459101	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:30:14:0.571:2	./.	./.	0/1:43,50:30:93:0.538:2	0/1:42,59:30:101:0.584:2	0/1:42,52:29:94:0.553:2	./.	./.	./.
chr11	55339676	rs12800642	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,29:31:74:0.392:2	./.	./.	./.	./.	0/1:62,50:31:112:0.446:2
chr11	55339702	rs34100491	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:31:11:0.636:2	./.	./.	0/1:43,54:31:97:0.557:2	./.	./.	./.	./.	0/1:77,58:31:135:0.430:2
chr11	55339704	rs78612916	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:50,40:32:91:0.444:2	0/1:41,15:32:56:0.268:2	./.	0/1:62,35:32:97:0.361:2	./.	./.	./.	./.	./.	./.	./.
chr11	55339712	rs75881957	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:50,40:31:90:0.444:2	0/1:43,14:31:57:0.246:2	./.	0/1:67,35:31:102:0.343:2	./.	./.	./.	./.	./.	./.	./.
chr11	55339740	rs80210585	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:64,52:32:116:0.448:2	0/1:54,21:32:75:0.280:2	./.	0/1:87,58:32:145:0.400:2	./.	./.	./.	./.	./.	./.	./.
chr11	55339798	rs557667	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,11:31:28:0.393:2	./.	./.	0/1:104,79:32:183:0.432:2	0/1:67,45:33:112:0.402:2	0/1:122,63:32:185:0.341:2	./.	./.	./.
chr11	55339829	rs557590	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,137:32:137:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,172:33:172:1.00:2	0/1:0,106:33:106:1.00:2	0/1:0,154:32:154:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,160:33:160:1.00:2	0/1:83,62:34:145:0.428:2	0/1:1,165:33:167:0.994:2	0/1:0,140:33:140:1.00:2
chr11	55340170	rs61916568	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:77,87:32:164:0.530:2	0/1:52,47:32:99:0.475:2	./.	0/1:87,80:32:167:0.479:2	./.	./.	./.	./.	./.	./.	./.
chr11	55340318	rs143423274	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,112:30:196:0.571:2	./.	./.	./.	./.	./.	./.
chr11	55340379	rs559449	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:84,71:33:155:0.458:2	0/1:54,61:33:115:0.530:2	0/1:0,47:32:47:1.00:2	0/1:106,53:33:159:0.333:2	./.	0/1:0,150:33:150:1.00:2	0/1:85,75:32:160:0.469:2	0/1:100,67:33:167:0.401:2	./.	./.	0/1:70,82:33:152:0.539:2
chr11	55340466	rs56111016	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:47,28:32:75:0.373:2	0/1:16,10:32:26:0.385:2	./.	0/1:36,26:32:62:0.419:2	./.	./.	./.	./.	./.	./.	./.
chr11	55371132	rs7114415	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:21,18:30:39:0.462:2	0/1:15,9:31:24:0.375:2	./.	0/1:31,29:31:60:0.483:2	./.	./.	./.	./.	./.	./.	./.
chr11	55371807	rs11230346	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,12:27:12:1.00:2	./.	./.	0/1:0,40:31:40:1.00:2	./.	./.	./.	./.	0/1:73,75:32:148:0.507:2
chr11	55371828	rs491160	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:43,48:32:91:0.527:2	0/1:40,25:32:65:0.385:2	./.	0/1:53,36:32:89:0.404:2	./.	./.	./.	./.	./.	./.	./.
chr11	55406022	rs76160133	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:32,30:32:62:0.484:2	0/1:24,24:32:48:0.500:2	./.	./.	0/1:30,28:32:58:0.483:2	./.	./.	./.	0/1:38,39:33:77:0.506:2	0/1:21,26:33:47:0.553:2	./.
chr11	55406255	rs139375531	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,34:32:67:0.507:2	./.
chr11	55406524	rs61896975	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:103,69:32:172:0.401:2	0/1:47,48:31:95:0.505:2	./.	0/1:101,69:31:170:0.406:2	./.	./.	./.	./.	./.	./.	./.
chr11	55418693	rs11230541	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:104,84:33:188:0.447:2	0/1:76,66:33:142:0.465:2	./.	./.	0/1:92,76:32:168:0.452:2	./.	0/1:182,5:35:187:0.027:2	./.	0/1:98,94:35:192:0.490:2	0/1:111,80:33:191:0.419:2	./.
chr11	55418963	rs7949664	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:100,86:32:186:0.462:2	0/1:102,82:32:184:0.446:2	./.	0/1:97,97:32:194:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr11	55433040	rs11230600	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:32:13:0.385:2	./.	./.	0/1:37,37:31:74:0.500:2	0/1:41,36:31:77:0.468:2	0/1:46,44:32:91:0.489:2	./.	./.	./.
chr11	55541098	rs297118	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,146:30:146:1.00:2	0/1:0,74:31:75:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,148:30:148:1.00:2	0/1:1,109:30:110:0.991:2	0/1:0,118:30:118:1.00:2	0/1:0,100:29:100:1.00:2	0/1:0,171:30:171:1.00:2	0/1:2,167:31:170:0.988:2	0/1:0,127:31:127:1.00:2	0/1:1,184:30:185:0.995:2
chr11	55541620	rs7124871	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:52,33:31:85:0.388:2	0/1:26,19:32:45:0.422:2	./.	0/1:52,43:32:95:0.453:2	./.	./.	./.	./.	./.	./.	./.
chr11	55563336	rs76383258	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:78,84:32:162:0.519:2	0/1:59,56:32:115:0.487:2	./.	./.	0/1:97,73:32:170:0.429:2	./.	./.	./.	0/1:71,111:33:182:0.610:2	0/1:68,58:33:126:0.460:2	./.
chr11	55563602	rs68042892	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,99:32:187:0.529:2	0/1:79,49:31:128:0.383:2	./.	0/1:67,66:31:133:0.496:2	0/1:99,98:32:197:0.497:2	./.	0/1:84,53:32:137:0.387:2	0/1:108,81:32:189:0.429:2
chr11	55563738	rs67863827	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,91:31:180:0.506:2	0/1:92,65:31:157:0.414:2	./.	0/1:99,58:30:157:0.369:2	0/1:112,68:31:180:0.378:2	./.	0/1:78,85:32:163:0.521:2	0/1:96,68:31:164:0.415:2
chr11	55563761	rs61896309	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:82,74:30:156:0.474:2	0/1:44,53:30:97:0.546:2	./.	0/1:86,70:30:156:0.449:2	./.	./.	./.	./.	./.	./.	./.
chr11	55563776	rs297054	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,142:33:143:0.993:2	0/1:0,91:32:92:1.00:2	0/1:0,25:33:25:1.00:2	0/1:0,136:33:136:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,134:32:134:1.00:2	0/1:2,126:33:128:0.984:2	0/1:0,128:32:128:1.00:2	0/1:0,161:33:161:1.00:2	0/1:0,109:33:109:1.00:2	0/1:0,140:32:140:1.00:2
chr11	55563846	rs61896310	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:63,30:32:93:0.323:2	0/1:31,20:31:51:0.392:2	./.	0/1:51,27:31:78:0.346:2	./.	./.	./.	./.	./.	./.	./.
chr11	55563900	rs297055	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,23:28:43:0.535:2	./.	./.
chr11	55578987	rs67727364	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,44:31:83:0.530:2	0/1:57,44:31:101:0.436:2	./.	0/1:43,29:31:72:0.403:2	0/1:49,26:32:75:0.347:2	./.	0/1:34,32:31:66:0.485:2	0/1:46,37:32:83:0.446:2
chr11	55578991	rs66537410	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,44:31:82:0.537:2	0/1:62,46:31:108:0.426:2	./.	0/1:48,34:31:82:0.415:2	0/1:50,26:30:76:0.342:2	./.	0/1:33,35:31:68:0.515:2	0/1:46,39:30:85:0.459:2
chr11	55579068	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,7:30:164:0.043:2	./.
chr11	55579079	rs200312744	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,7:31:169:0.041:2	./.
chr11	55579102	rs34961497	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:121,66:31:187:0.353:2	0/1:91,80:31:171:0.468:2	./.	0/1:108,72:32:180:0.400:2	0/1:118,76:32:194:0.392:2	./.	0/1:88,95:32:183:0.519:2	0/1:111,76:32:187:0.406:2
chr11	55579145	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:174,6:32:180:0.033:2	0/1:147,4:32:151:0.026:2	./.	0/1:162,10:29:172:0.058:2	0/1:177,14:31:191:0.073:2	./.	0/1:160,13:31:173:0.075:2	0/1:176,6:31:182:0.033:2
chr11	55579182	rs139708815	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:165,11:34:176:0.063:2	0/1:126,11:32:137:0.080:2	./.	0/1:163,21:34:184:0.114:2	0/1:150,23:33:173:0.133:2	./.	0/1:135,18:33:153:0.118:2	0/1:167,10:34:177:0.056:2
chr11	55579419	rs34948392	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,99:33:194:0.510:2	0/1:119,77:32:196:0.393:2	./.	0/1:103,94:32:197:0.477:2	0/1:97,95:33:192:0.495:2	./.	0/1:115,78:32:193:0.404:2	0/1:96,98:33:194:0.505:2
chr11	55579801	rs12790505	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,33:31:69:0.478:2	0/1:11,24:31:35:0.686:2	./.	0/1:26,29:31:55:0.527:2	0/1:44,32:32:76:0.421:2	./.	0/1:34,22:32:57:0.393:2	0/1:33,44:32:77:0.571:2
chr11	55587117	rs297082	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:33:54:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,64:33:64:1.00:2	0/1:2,114:33:116:0.983:2	0/1:0,85:32:85:1.00:2	0/1:0,93:33:93:1.00:2
chr11	55587212	rs7948629	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:66,56:33:122:0.459:2	0/1:48,43:32:91:0.473:2	./.	0/1:86,104:33:190:0.547:2	./.	./.	./.	./.	./.	./.	./.
chr11	55587511	rs297081	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,183:32:183:1.00:2	0/1:0,152:33:152:1.00:2	0/1:0,41:33:41:1.00:2	0/1:0,181:33:181:1.00:2	0/1:0,190:32:190:1.00:2	0/1:0,182:32:182:1.00:2	0/1:0,183:33:183:1.00:2	0/1:0,185:32:185:1.00:2	0/1:0,191:33:191:1.00:2	0/1:0,168:32:168:1.00:2	0/1:0,186:32:186:1.00:2
chr11	55587587	rs62001009	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:111,74:30:185:0.400:2	./.	./.	./.	./.	./.	./.
chr11	55587914	rs55832853	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,11:31:16:0.688:2	./.	./.	0/1:44,32:30:76:0.421:2	0/1:47,36:31:83:0.434:2	0/1:44,55:30:99:0.556:2	./.	./.	./.
chr11	55587999	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,3:30:26:0.115:2	./.	./.	./.	./.	./.	./.
chr11	55594739	rs200949287	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,9:28:87:0.103:2	./.	0/1:100,4:30:104:0.038:2	0/1:113,6:30:119:0.050:2	./.	0/1:69,4:32:73:0.055:2	./.
chr11	55594743	rs201921378	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,9:31:92:0.098:2	./.	0/1:103,4:32:107:0.037:2	0/1:115,6:32:121:0.050:2	./.	./.	./.
chr11	55594869	rs56711116	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:106,63:31:169:0.373:2	0/1:84,78:31:162:0.481:2	./.	0/1:85,88:32:173:0.509:2	0/1:92,101:31:193:0.523:2	./.	0/1:100,80:32:180:0.444:2	0/1:80,95:31:175:0.543:2
chr11	55595012	rs35645945	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,27:32:107:0.252:2	0/1:83,19:31:102:0.186:2	./.	0/1:68,24:32:92:0.261:2	0/1:105,18:32:123:0.146:2	./.	0/1:72,15:32:87:0.172:2	0/1:84,21:32:105:0.200:2
chr11	55595017	rs117277709	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,24:29:103:0.233:2	0/1:84,17:30:101:0.168:2	./.	0/1:67,22:29:89:0.247:2	0/1:104,16:30:120:0.133:2	./.	0/1:76,10:31:86:0.116:2	0/1:80,20:30:100:0.200:2
chr11	55595018	rs61745634	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,24:32:101:0.238:2	0/1:85,17:31:102:0.167:2	./.	0/1:69,22:31:91:0.242:2	0/1:105,16:31:121:0.132:2	./.	0/1:76,10:32:86:0.116:2	0/1:79,21:31:100:0.210:2
chr11	55595081	rs7102394	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,93:33:192:0.484:2	./.	./.
chr11	55595114	rs34929168	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:122,49:31:171:0.287:2	0/1:140,36:31:176:0.205:2	./.	0/1:120,53:30:173:0.306:2	0/1:115,50:31:165:0.303:2	./.	0/1:114,59:31:173:0.341:2	0/1:100,54:31:154:0.351:2
chr11	55595115	rs35214936	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:122,49:31:171:0.287:2	0/1:142,36:31:178:0.202:2	./.	0/1:119,52:31:172:0.304:2	0/1:116,50:30:166:0.301:2	./.	0/1:117,59:32:176:0.335:2	0/1:100,54:30:154:0.351:2
chr11	55595116	rs75822385	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:123,49:32:174:0.285:2	0/1:143,36:32:179:0.201:2	./.	0/1:120,53:32:173:0.306:2	0/1:116,50:32:166:0.301:2	./.	0/1:117,59:32:176:0.335:2	0/1:103,54:32:157:0.344:2
chr11	55595324	rs7102663	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,75:32:153:0.490:2	./.	./.
chr11	55606302	rs6591699	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:98,66:32:164:0.402:2	0/1:49,50:32:99:0.505:2	0/1:8,4:31:12:0.333:2	./.	0/1:77,43:30:120:0.358:2	./.	0/1:97,51:31:148:0.345:2	0/1:102,83:32:185:0.449:2	0/1:0,159:32:159:1.00:2	0/1:118,66:32:185:0.359:2	./.
chr11	55606472	rs62001008	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,10:29:29:0.345:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	55606693	rs6591700	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,65:32:109:0.602:2	./.	./.
chr11	55606818	rs11231253	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:88,93:31:181:0.514:2	0/1:64,65:32:129:0.504:2	0/1:16,30:31:46:0.652:2	./.	0/1:86,84:31:170:0.494:2	./.	0/1:104,93:32:197:0.472:2	0/1:107,75:32:182:0.412:2	0/1:98,85:32:184:0.464:2	0/1:106,84:32:191:0.442:2	./.
chr11	55607057	rs61896326	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:60,42:31:102:0.412:2	0/1:24,30:32:54:0.556:2	./.	0/1:46,41:32:87:0.471:2	./.	0/1:43,35:31:78:0.449:2	./.	./.	./.	./.	./.
chr11	55607085	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:32:73:0.056:2	./.	./.	./.	./.
chr11	55607137	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,28:33:51:0.549:2	./.
chr11	55652939	rs190958552	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,48:28:103:0.475:2	./.	./.	./.	./.	./.
chr11	55652963	rs2063276	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:70,60:33:130:0.462:2	0/1:68,36:33:104:0.346:2	0/1:12,15:33:27:0.556:2	./.	0/1:54,44:32:98:0.449:2	./.	0/1:45,66:33:111:0.595:2	0/1:79,65:32:144:0.451:2	0/1:0,138:34:138:1.00:2	0/1:61,64:32:125:0.512:2	./.
chr11	55652971	rs2063277	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,130:32:134:0.970:2	0/1:19,85:32:104:0.817:2	0/1:0,29:32:29:1.00:2	0/1:10,153:32:163:0.939:2	0/1:0,112:32:112:1.00:2	0/1:0,154:31:154:1.00:2	0/1:0,129:32:129:1.00:2	0/1:1,157:32:158:0.994:2	0/1:0,149:33:149:1.00:2	0/1:0,137:32:137:1.00:2	0/1:14,156:33:170:0.918:2
chr11	55653021	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:33:127:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	55653164	rs10897403	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:33,21:31:54:0.389:2	0/1:24,21:31:45:0.467:2	0/1:6,9:31:15:0.600:2	./.	0/1:26,21:30:47:0.447:2	./.	0/1:24,29:30:53:0.547:2	0/1:24,34:31:58:0.586:2	0/1:18,29:32:47:0.617:2	0/1:27,28:31:55:0.509:2	./.
chr11	55653617	rs144396749	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,62:34:124:0.500:2	./.	./.
chr11	55655597	.	A	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:184,12:32:196:0.061:2	0/1:185,14:32:199:0.070:2	./.	0/1:181,8:32:189:0.042:2	0/1:184,10:31:194:0.052:2	0/1:182,9:31:191:0.047:2	0/1:177,8:30:186:0.043:2	0/1:174,17:33:191:0.089:2	0/1:186,12:35:198:0.061:2	0/1:172,14:32:186:0.075:2	0/1:179,11:32:190:0.058:2
chr11	55655656	rs201622380	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,4:32:50:0.080:2	./.	./.	./.	./.	0/1:174,20:33:194:0.103:2	./.	./.	./.
chr11	55656483	rs7483200	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:31,28:32:59:0.475:2	0/1:21,19:32:40:0.475:2	0/1:0,14:30:14:1.00:2	./.	0/1:38,26:30:64:0.406:2	0/1:38,30:31:68:0.441:2	0/1:18,17:32:35:0.486:2	0/1:40,28:30:68:0.412:2	0/1:0,57:32:57:1.00:2	0/1:32,44:31:76:0.579:2	0/1:35,63:31:98:0.643:2
chr11	55681130	rs34573569	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,17:31:32:0.531:2	0/1:11,17:31:28:0.607:2	./.	0/1:5,4:31:9:0.444:2	0/1:7,6:30:13:0.462:2	./.	0/1:9,16:32:25:0.640:2	0/1:16,16:29:33:0.500:2
chr11	55681149	rs62639688	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:19,14:32:33:0.424:2	0/1:12,11:33:23:0.478:2	./.	0/1:29,22:33:51:0.431:2	./.	0/1:24,15:32:39:0.385:2	./.	./.	./.	./.	./.
chr11	55681336	rs11231529	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:28:18:0.500:2	./.	./.	0/1:26,31:28:57:0.544:2	./.	./.	0/1:29,22:30:51:0.431:2	./.	0/1:32,21:30:53:0.396:2
chr11	55681375	rs17511601	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:22,20:33:42:0.476:2	0/1:9,15:32:24:0.625:2	./.	0/1:24,25:33:49:0.510:2	./.	0/1:18,18:31:36:0.500:2	./.	./.	./.	./.	./.
chr11	55681416	rs17596422	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:16,25:33:41:0.610:2	0/1:13,14:32:27:0.519:2	./.	0/1:26,23:33:49:0.469:2	./.	0/1:14,12:32:26:0.462:2	./.	./.	./.	./.	./.
chr11	55681494	rs2457239	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,74:33:74:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,66:32:66:1.00:2
chr11	55681566	rs61749302	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,27:33:53:0.509:2	0/1:29,12:33:41:0.293:2	./.	0/1:13,25:33:38:0.658:2	0/1:17,23:32:40:0.575:2	./.	0/1:29,15:33:44:0.341:2	0/1:27,26:34:53:0.491:2
chr11	55681580	rs17596519	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:18,17:30:35:0.486:2	0/1:18,15:29:33:0.455:2	./.	0/1:23,21:30:44:0.477:2	./.	0/1:19,18:28:37:0.486:2	./.	./.	./.	./.	./.
chr11	55681942	rs17511797	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:44,20:32:64:0.313:2	0/1:30,22:31:52:0.423:2	./.	0/1:34,23:31:57:0.404:2	./.	0/1:38,13:30:51:0.255:2	./.	./.	./.	./.	./.
chr11	55702961	rs9665861	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:32,18:31:50:0.360:2	0/1:24,9:32:33:0.273:2	./.	0/1:38,14:32:52:0.269:2	./.	0/1:27,18:31:45:0.400:2	./.	./.	./.	./.	./.
chr11	55703010	rs9665863	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:21,18:33:39:0.462:2	0/1:27,7:32:34:0.206:2	./.	0/1:30,18:32:48:0.375:2	./.	0/1:25,13:32:38:0.342:2	./.	./.	./.	./.	./.
chr11	55703011	rs61995929	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,23:32:42:0.548:2	./.	./.	./.
chr11	55703247	rs4465383	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:48,37:31:85:0.435:2	0/1:44,16:31:60:0.267:2	./.	0/1:0,69:30:69:1.00:2	0/1:42,35:30:77:0.455:2	0/1:34,41:30:75:0.547:2	0/1:50,37:30:87:0.425:2	0/1:61,51:30:112:0.455:2	./.	0/1:22,38:30:60:0.633:2	0/1:70,46:30:117:0.397:2
chr11	55703650	rs9666086	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:16,16:31:32:0.500:2	0/1:8,9:33:17:0.529:2	./.	0/1:11,9:32:20:0.450:2	./.	0/1:18,13:32:31:0.419:2	./.	./.	./.	./.	./.
chr11	55703728	rs4367963	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,27:28:67:0.403:2	0/1:37,33:29:70:0.471:2	./.	0/1:33,21:30:54:0.389:2	0/1:36,34:28:70:0.486:2	./.	0/1:37,32:28:69:0.464:2	0/1:42,33:30:75:0.440:2
chr11	55703766	rs17597589	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:37,29:28:66:0.439:2	0/1:29,26:29:55:0.473:2	./.	0/1:45,49:29:94:0.521:2	./.	0/1:62,40:29:102:0.392:2	./.	./.	./.	./.	./.
chr11	55703861	rs17597625	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:7,13:30:20:0.650:2	0/1:11,9:33:20:0.450:2	./.	0/1:9,21:33:30:0.700:2	./.	0/1:9,9:33:18:0.500:2	./.	./.	./.	./.	./.
chr11	55735106	rs61896163	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:57,43:33:100:0.430:2	0/1:38,34:33:72:0.472:2	./.	0/1:41,53:33:94:0.564:2	./.	0/1:32,42:33:74:0.568:2	./.	./.	./.	./.	./.
chr11	55735280	rs61896164	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:45,25:32:70:0.357:2	0/1:23,22:32:45:0.489:2	./.	0/1:55,51:32:106:0.481:2	./.	0/1:36,52:32:88:0.591:2	./.	./.	./.	./.	./.
chr11	55735518	rs61896165	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:15,14:31:29:0.483:2	0/1:17,16:31:33:0.485:2	./.	0/1:11,29:31:40:0.725:2	./.	0/1:17,20:31:37:0.541:2	./.	./.	./.	./.	./.
chr11	55735579	rs61896166	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:14,14:33:28:0.500:2	0/1:19,12:31:31:0.387:2	./.	0/1:18,25:33:43:0.581:2	./.	0/1:13,20:32:33:0.606:2	./.	./.	./.	./.	./.
chr11	55735649	rs61896167	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:30,16:31:46:0.348:2	0/1:23,12:32:35:0.343:2	./.	0/1:30,22:32:52:0.423:2	./.	0/1:19,23:31:42:0.548:2	./.	./.	./.	./.	./.
chr11	55735808	rs78226543	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:28,4:33:32:0.125:2	0/1:26,4:32:30:0.133:2	./.	0/1:19,6:32:25:0.240:2	./.	0/1:25,8:33:33:0.242:2	./.	./.	./.	./.	./.
chr11	55735813	rs80245253	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:29,3:31:32:0.094:2	0/1:20,5:33:25:0.200:2	./.	0/1:19,6:33:25:0.240:2	./.	0/1:24,5:32:29:0.172:2	./.	./.	./.	./.	./.
chr11	55735848	rs75026138	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:29,4:30:33:0.121:2	0/1:19,8:29:27:0.296:2	./.	0/1:21,6:30:27:0.222:2	./.	0/1:27,6:30:33:0.182:2	./.	./.	./.	./.	./.
chr11	55735857	rs76700680	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:17,6:27:23:0.261:2	./.	0/1:19,4:28:23:0.174:2	./.	0/1:30,6:28:36:0.167:2	./.	./.	./.	./.	./.
chr11	55761221	rs2449134	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:32:64:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,18:31:18:1.00:2	0/1:1,76:31:77:0.987:2	0/1:0,63:31:63:1.00:2	0/1:3,82:31:85:0.965:2	0/1:0,71:31:71:1.00:2	0/1:0,99:31:99:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,103:32:103:1.00:2	0/1:0,94:32:94:1.00:2
chr11	55761251	rs66470326	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,52:29:108:0.481:2	./.	./.	./.
chr11	55761256	rs77110658	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:34,34:33:68:0.500:2	0/1:27,17:32:44:0.386:2	./.	0/1:42,39:32:81:0.481:2	./.	0/1:48,26:31:74:0.351:2	./.	./.	./.	./.	./.
chr11	55761281	rs80272096	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:39,38:32:77:0.494:2	0/1:27,20:32:47:0.426:2	./.	0/1:35,38:31:73:0.521:2	./.	0/1:46,23:30:69:0.333:2	./.	./.	./.	./.	./.
chr11	55761528	rs35607186	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,51:31:113:0.451:2	0/1:30,28:29:58:0.483:2	./.	0/1:42,38:30:80:0.475:2	0/1:62,56:30:118:0.475:2	./.	0/1:36,33:31:69:0.478:2	0/1:54,49:29:103:0.476:2
chr11	55761738	rs2128152	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:29:103:1.00:2	0/1:0,72:29:72:1.00:2	0/1:0,32:29:32:1.00:2	0/1:0,116:29:116:1.00:2	0/1:0,150:29:150:1.00:2	0/1:0,138:30:138:1.00:2	0/1:0,132:29:132:1.00:2	0/1:0,166:29:166:1.00:2	0/1:0,177:30:177:1.00:2	0/1:0,122:29:122:1.00:2	0/1:0,149:29:149:1.00:2
chr11	55761786	rs61888467	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:75,34:30:109:0.312:2	0/1:41,18:29:59:0.305:2	./.	0/1:89,33:28:122:0.270:2	./.	0/1:104,41:29:145:0.283:2	./.	./.	./.	./.	./.
chr11	55761823	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,6:33:171:0.035:2
chr11	55762060	rs71490418	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,27:32:57:0.474:2	./.	./.	./.	./.	0/1:32,39:33:71:0.549:2
chr11	55798152	rs1482011	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:32:86:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,81:31:81:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,88:30:88:1.00:2	0/1:0,84:30:84:1.00:2	0/1:0,86:31:86:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,70:31:70:1.00:2	0/1:0,107:31:107:1.00:2
chr11	55798237	rs17528782	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:103,71:32:174:0.408:2	0/1:40,62:33:102:0.608:2	./.	0/1:110,89:32:199:0.447:2	./.	0/1:125,71:32:196:0.362:2	./.	./.	./.	./.	./.
chr11	55798517	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,16:32:101:0.158:2	./.
chr11	55798533	rs17528803	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:56,62:32:118:0.525:2	0/1:39,32:33:71:0.451:2	./.	0/1:58,48:33:107:0.453:2	./.	0/1:85,58:32:143:0.406:2	./.	./.	./.	./.	./.
chr11	55798761	rs61889974	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:14,8:33:22:0.364:2	0/1:8,9:31:17:0.529:2	./.	0/1:8,14:32:22:0.636:2	./.	0/1:14,15:32:29:0.517:2	./.	./.	./.	./.	./.
chr11	55798764	rs61889975	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:14,8:33:22:0.364:2	0/1:8,9:33:17:0.529:2	./.	0/1:7,14:33:21:0.667:2	./.	0/1:13,15:32:28:0.536:2	./.	./.	./.	./.	./.
chr11	55798823	rs17600939	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,9:29:12:0.750:2	./.	./.	./.	./.	./.
chr11	55861147	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,12:33:50:0.240:2	./.
chr11	55861153	rs17603011	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:45,39:30:84:0.464:2	0/1:19,24:28:43:0.558:2	./.	0/1:60,49:29:109:0.450:2	./.	0/1:52,41:28:93:0.441:2	./.	./.	./.	./.	./.
chr11	55861297	rs117967749	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:45,41:29:86:0.477:2	0/1:49,17:29:66:0.258:2	./.	0/1:54,35:28:89:0.393:2	./.	0/1:45,34:29:79:0.430:2	./.	./.	./.	./.	./.
chr11	55861307	rs112181516	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,3:35:61:0.049:2	./.	0/1:44,3:35:47:0.064:2	./.	./.	./.	./.	./.
chr11	55861484	rs61887096	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:83,38:28:121:0.314:2	0/1:52,22:29:74:0.297:2	./.	0/1:80,32:29:112:0.286:2	./.	0/1:68,40:28:108:0.370:2	./.	./.	./.	./.	./.
chr11	55861650	rs61887097	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:19,11:33:30:0.367:2	0/1:15,11:32:26:0.423:2	./.	0/1:37,18:33:55:0.327:2	./.	0/1:29,16:32:45:0.356:2	./.	./.	./.	./.	./.
chr11	55872537	rs61746549	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:33:79:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	55872620	rs61745328	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:32:163:0.025:2	./.	./.
chr11	55872657	rs28681529	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,57:33:138:0.413:2	0/1:61,39:32:100:0.390:2	./.	0/1:73,34:32:107:0.318:2	0/1:75,50:32:125:0.400:2	./.	0/1:85,57:32:142:0.401:2	0/1:99,73:32:172:0.424:2
chr11	55872731	rs371952790	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:32:176:0.023:2	./.	./.	./.	./.	./.
chr11	55872832	rs61750923	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:97,68:31:165:0.412:2	0/1:57,53:31:110:0.482:2	./.	0/1:92,97:32:189:0.513:2	./.	0/1:98,93:31:191:0.487:2	./.	./.	./.	./.	./.
chr11	55872876	rs2512961	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,97:32:179:0.542:2	0/1:55,54:32:109:0.495:2	0/1:0,34:31:34:1.00:2	0/1:97,83:31:180:0.461:2	0/1:0,116:31:116:1.00:2	0/1:89,98:31:187:0.524:2	0/1:0,124:31:124:1.00:2	0/1:0,166:31:166:1.00:2	0/1:0,177:32:177:1.00:2	0/1:0,142:31:142:1.00:2	0/1:0,183:32:183:1.00:2
chr11	55872943	rs200043073	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:168,8:32:176:0.045:2	0/1:135,6:32:141:0.043:2	./.	0/1:180,4:33:184:0.022:2	./.	0/1:163,11:32:174:0.063:2	./.	./.	./.	./.	./.
chr11	55872980	rs61734406	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:88,32:33:120:0.267:2	0/1:81,29:33:110:0.264:2	./.	0/1:94,44:32:138:0.319:2	0/1:159,5:33:164:0.030:2	0/1:103,35:33:138:0.254:2	0/1:177,4:33:181:0.022:2	0/1:183,7:32:190:0.037:2	./.	0/1:183,4:33:187:0.021:2	./.
chr11	55872990	rs61734403	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:90,30:32:120:0.250:2	0/1:83,27:34:110:0.245:2	./.	0/1:103,46:34:149:0.309:2	./.	0/1:109,29:33:138:0.210:2	./.	./.	./.	./.	./.
chr11	55873024	rs2449148	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,127:32:127:1.00:2	0/1:0,91:33:91:1.00:2	0/1:0,60:33:60:1.00:2	0/1:0,142:33:142:1.00:2	0/1:0,151:33:151:1.00:2	0/1:0,135:32:135:1.00:2	0/1:0,182:33:182:1.00:2	0/1:0,183:32:183:1.00:2	0/1:0,191:34:191:1.00:2	0/1:0,168:33:168:1.00:2	0/1:0,187:33:187:1.00:2
chr11	55873026	rs61734396	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:88,42:30:130:0.323:2	0/1:74,20:32:94:0.213:2	./.	0/1:89,58:31:147:0.395:2	./.	0/1:97,39:30:136:0.287:2	./.	./.	./.	./.	./.
chr11	55873028	rs141308613	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,38:31:58:0.655:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	55873144	rs72919590	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,63:30:137:0.460:2	./.	./.	0/1:48,51:29:99:0.515:2	./.	./.	0/1:61,54:30:115:0.470:2	./.
chr11	55873293	rs61731255	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:37,59:33:96:0.615:2	0/1:28,19:32:47:0.404:2	./.	0/1:34,44:33:78:0.564:2	./.	0/1:48,27:32:75:0.360:2	./.	./.	./.	./.	./.
chr11	55873368	rs1842696	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:32:66:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,73:32:73:1.00:2
chr11	55889867	rs148197076	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,7:25:142:0.049:2	./.	./.	./.
chr11	55889950	rs145348383	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:180,9:30:190:0.048:2	0/1:135,8:33:143:0.056:2	./.	0/1:137,13:33:150:0.087:2	0/1:186,11:33:197:0.056:2	./.	0/1:175,5:33:180:0.028:2	0/1:188,9:28:197:0.046:2
chr11	55889987	rs7107077	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,68:32:158:0.430:2	./.	./.
chr11	55890156	rs61746202	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:89,81:32:170:0.476:2	0/1:81,62:32:143:0.434:2	./.	0/1:112,63:31:175:0.360:2	./.	0/1:99,65:31:164:0.396:2	./.	./.	./.	./.	./.
chr11	55890257	rs1842691	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,139:32:139:1.00:2	0/1:0,87:31:87:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,143:31:143:1.00:2	0/1:0,130:31:130:1.00:2	0/1:0,127:31:127:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,176:31:176:1.00:2	0/1:0,170:32:170:1.00:2	0/1:0,147:31:147:1.00:2	0/1:0,190:32:190:1.00:2
chr11	55890273	rs61743852	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:101,37:32:138:0.268:2	0/1:66,27:32:93:0.290:2	./.	0/1:91,47:32:138:0.341:2	./.	0/1:96,44:31:140:0.314:2	./.	./.	./.	./.	./.
chr11	55890320	rs61743838	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:89,25:33:114:0.219:2	0/1:49,29:32:78:0.372:2	./.	0/1:108,45:33:153:0.294:2	./.	0/1:105,62:32:167:0.371:2	./.	./.	./.	./.	./.
chr11	55890355	rs78856925	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:80,33:33:113:0.292:2	0/1:47,31:32:78:0.397:2	./.	0/1:99,44:32:143:0.308:2	./.	0/1:105,63:32:168:0.375:2	./.	./.	./.	./.	./.
chr11	55890356	rs61746318	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:78,33:31:111:0.297:2	0/1:46,31:32:77:0.403:2	./.	0/1:102,44:31:146:0.301:2	./.	0/1:106,63:30:169:0.373:2	./.	./.	./.	./.	./.
chr11	55890449	rs17531522	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:78,53:29:131:0.405:2	0/1:44,41:30:85:0.482:2	./.	0/1:98,76:30:174:0.437:2	./.	0/1:81,78:29:159:0.491:2	./.	./.	./.	./.	./.
chr11	55890571	rs61743017	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:83,56:31:139:0.403:2	0/1:60,26:32:86:0.302:2	./.	0/1:115,56:32:171:0.327:2	./.	0/1:94,82:31:176:0.466:2	./.	./.	./.	./.	./.
chr11	55890609	rs61743026	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:75,37:33:112:0.330:2	0/1:48,19:32:67:0.284:2	./.	0/1:95,45:32:140:0.321:2	./.	0/1:73,55:31:128:0.430:2	./.	./.	./.	./.	./.
chr11	55890726	rs61747871	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:53,30:31:83:0.361:2	0/1:29,18:31:47:0.383:2	./.	0/1:38,21:31:59:0.356:2	./.	0/1:34,31:31:65:0.477:2	./.	./.	./.	./.	./.
chr11	55890732	rs11606538	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:28,45:31:73:0.616:2	0/1:22,27:32:49:0.551:2	./.	./.	0/1:22,13:31:35:0.371:2	./.	./.	./.	0/1:44,32:32:76:0.421:2	./.	./.
chr11	55890736	rs11604579	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:27,45:32:72:0.625:2	0/1:22,27:32:49:0.551:2	./.	./.	0/1:21,13:31:34:0.382:2	./.	./.	./.	0/1:43,33:33:76:0.434:2	./.	./.
chr11	55904352	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,4:31:109:0.037:2	./.	./.	./.	./.	./.	./.
chr11	55904751	rs1947923	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:46,49:29:95:0.516:2	0/1:25,32:29:57:0.561:2	./.	0/1:41,53:30:94:0.564:2	./.	0/1:47,51:28:98:0.520:2	./.	./.	./.	./.	./.
chr11	55905025	rs1947924	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:38,39:32:77:0.506:2	0/1:22,25:32:47:0.532:2	./.	0/1:42,24:31:66:0.364:2	./.	0/1:51,54:32:105:0.514:2	./.	./.	./.	./.	./.
chr11	55927080	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:32:80:0.050:2	./.
chr11	55927442	rs61746523	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:31,29:28:60:0.483:2	0/1:20,12:28:32:0.375:2	./.	0/1:31,43:30:74:0.581:2	./.	0/1:26,25:29:51:0.490:2	./.	./.	./.	./.	./.
chr11	55927584	rs141612231	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,30:30:73:0.411:2	./.	./.	./.	./.
chr11	55999737	rs7121880	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:58,34:31:92:0.370:2	0/1:28,28:30:56:0.500:2	./.	0/1:84,38:31:122:0.311:2	./.	0/1:62,55:30:118:0.470:2	./.	./.	./.	./.	./.
chr11	55999897	rs7122000	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:86,66:32:152:0.434:2	0/1:42,27:32:69:0.391:2	./.	0/1:88,59:31:147:0.401:2	./.	0/1:86,45:31:131:0.344:2	./.	./.	./.	./.	./.
chr11	56000079	rs77295387	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:115,84:30:199:0.422:2	./.	./.	./.	./.	./.	0/1:104,75:32:179:0.419:2
chr11	56000288	rs7122514	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:32,36:32:68:0.529:2	0/1:18,17:32:35:0.486:2	./.	0/1:31,16:31:47:0.340:2	./.	0/1:40,19:31:59:0.322:2	./.	./.	./.	./.	./.
chr11	56000403	rs10791893	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,14:33:14:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,31:33:31:1.00:2	0/1:22,9:32:31:0.290:2	0/1:0,26:32:26:1.00:2	0/1:0,32:34:32:1.00:2
chr11	56000471	rs11227599	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:29,6:32:35:0.171:2	0/1:12,9:32:21:0.429:2	./.	0/1:26,29:31:55:0.527:2	./.	0/1:22,26:31:48:0.542:2	./.	./.	./.	./.	./.
chr11	56000581	rs76457874	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:20,27:32:47:0.574:2	0/1:13,13:32:26:0.500:2	./.	0/1:42,30:31:72:0.417:2	./.	0/1:22,31:31:53:0.585:2	./.	./.	./.	./.	./.
chr11	56000600	rs3919907	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:31:11:1.00:2	./.	./.	0/1:39,26:30:65:0.400:2	0/1:43,30:31:73:0.411:2	./.	./.	./.	./.
chr11	56020244	rs61746551	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:98,94:32:192:0.490:2	0/1:103,88:32:191:0.461:2	./.	0/1:98,99:33:197:0.503:2	./.	0/1:96,101:33:197:0.513:2	./.	./.	./.	./.	./.
chr11	56043477	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,6:30:120:0.050:2	./.	./.	./.	./.	./.	./.	./.
chr11	56043486	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,6:29:135:0.044:2	./.	./.	./.	./.	./.	./.	./.
chr11	56043515	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:178,6:30:184:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr11	56043604	rs12360890	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:102,93:32:195:0.477:2	0/1:89,106:33:195:0.544:2	0/1:1,54:33:55:0.982:2	0/1:195,5:34:200:0.025:2	0/1:105,92:32:197:0.467:2	0/1:96,94:32:190:0.495:2	0/1:98,95:32:193:0.492:2	0/1:86,113:32:199:0.568:2	0/1:101,97:34:198:0.490:2	0/1:98,99:33:197:0.503:2	./.
chr11	56043702	rs7125697	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,187:32:188:0.995:2	0/1:0,182:32:182:1.00:2	0/1:0,59:32:59:1.00:2	0/1:1,175:33:176:0.994:2	0/1:0,194:32:194:1.00:2	0/1:0,183:32:183:1.00:2	0/1:0,181:32:181:1.00:2	0/1:0,179:33:179:1.00:2	0/1:98,93:33:191:0.487:2	0/1:0,169:33:169:1.00:2	0/1:111,86:32:197:0.437:2
chr11	56057898	rs61888286	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:75,34:32:109:0.312:2	0/1:30,25:32:55:0.455:2	./.	0/1:64,60:31:124:0.484:2	./.	0/1:63,42:31:105:0.400:2	./.	./.	./.	./.	./.
chr11	56058197	rs1842674	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:55,51:32:106:0.481:2	0/1:37,36:32:73:0.493:2	0/1:0,16:30:16:1.00:2	./.	0/1:32,37:31:69:0.536:2	0/1:60,29:31:89:0.326:2	0/1:30,27:29:57:0.474:2	0/1:58,47:31:105:0.448:2	0/1:47,41:32:88:0.466:2	0/1:40,40:32:80:0.500:2	./.
chr11	56058343	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:85,5:32:90:0.056:2	./.	./.	./.	./.	./.	./.
chr11	56058416	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:97,5:34:103:0.049:2	./.	./.	./.	0/1:52,5:33:57:0.088:2	./.	./.	./.	./.	./.	./.
chr11	56058452	rs374684309	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,3:34:35:0.086:2	./.	./.	./.	./.	./.	./.
chr11	56058474	rs17540861	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:22,27:31:49:0.551:2	0/1:9,11:32:20:0.550:2	./.	0/1:16,20:31:36:0.556:2	./.	0/1:8,11:30:19:0.579:2	./.	./.	./.	./.	./.
chr11	56058535	rs11600896	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:9,8:33:17:0.471:2	./.	./.	./.	0/1:5,5:31:10:0.500:2	./.	./.	0/1:5,4:32:9:0.444:2	0/1:3,3:32:6:0.500:2	./.	./.
chr11	56086147	rs960193	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,178:29:180:0.994:2	0/1:0,88:29:88:1.00:2	0/1:0,23:28:23:1.00:2	0/1:1,170:29:171:0.994:2	0/1:0,181:28:181:1.00:2	0/1:0,176:29:176:1.00:2	0/1:1,187:29:188:0.995:2	0/1:2,188:29:190:0.989:2	0/1:110,86:29:196:0.439:2	0/1:0,144:29:144:1.00:2	0/1:115,75:29:191:0.395:2
chr11	56086299	rs12291617	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,65:32:158:0.411:2	./.	./.
chr11	56086445	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:32:112:0.036:2	./.	./.
chr11	56113516	rs1905055	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:31:34:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,44:30:44:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,37:30:37:1.00:2	0/1:1,48:30:49:0.980:2	0/1:0,32:30:32:1.00:2	0/1:27,14:31:41:0.341:2	0/1:0,29:31:29:1.00:2	0/1:17,32:30:49:0.653:2
chr11	56113575	rs10896271	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:51,32:28:83:0.386:2	0/1:27,17:28:44:0.386:2	0/1:0,13:29:13:1.00:2	./.	0/1:32,24:30:56:0.429:2	0/1:43,32:28:75:0.427:2	0/1:55,44:29:99:0.444:2	0/1:39,52:29:91:0.571:2	0/1:57,34:28:91:0.374:2	0/1:33,28:28:61:0.459:2	./.
chr11	56113593	rs10896272	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:59,37:32:96:0.385:2	0/1:31,18:31:49:0.367:2	0/1:0,13:31:13:1.00:2	./.	0/1:42,26:31:68:0.382:2	0/1:56,50:31:106:0.472:2	0/1:61,51:32:112:0.455:2	0/1:51,50:32:101:0.495:2	0/1:60,52:32:112:0.464:2	0/1:44,39:32:83:0.470:2	./.
chr11	56113764	rs17614327	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:62,57:29:120:0.479:2	0/1:29,35:30:64:0.547:2	./.	0/1:67,48:28:116:0.417:2	./.	0/1:74,61:30:135:0.452:2	./.	./.	./.	./.	./.
chr11	56113901	rs145345631	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,47:32:86:0.547:2	0/1:31,21:32:52:0.404:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	56113941	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:34:95:0.042:2	./.
chr11	56127746	rs7942390	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:32:35:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,29:31:29:1.00:2
chr11	56127829	rs7927015	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:45,49:32:94:0.521:2	0/1:29,30:31:59:0.508:2	./.	0/1:42,51:31:93:0.548:2	./.	0/1:52,40:29:92:0.435:2	./.	./.	./.	./.	./.
chr11	56127971	rs62001034	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,48:32:111:0.432:2	./.	./.	./.	./.	./.	./.
chr11	56128062	rs7942730	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:69,58:32:127:0.457:2	0/1:34,22:32:56:0.393:2	./.	0/1:51,47:32:98:0.480:2	./.	0/1:76,80:32:156:0.513:2	./.	./.	./.	./.	./.
chr11	56128081	rs10896290	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,74:33:159:0.465:2	./.	0/1:89,62:33:151:0.411:2
chr11	56128406	rs62001032	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:48,33:32:81:0.407:2	0/1:17,28:32:45:0.622:2	./.	0/1:41,35:32:77:0.461:2	./.	0/1:29,27:32:56:0.482:2	./.	./.	./.	./.	./.
chr11	56128524	rs7928704	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,107:32:107:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,110:32:110:1.00:2	0/1:0,106:31:106:1.00:2	0/1:0,115:31:115:1.00:2	0/1:0,123:31:123:1.00:2	0/1:0,155:32:155:1.00:2	0/1:0,152:32:152:1.00:2	0/1:0,118:32:118:1.00:2	0/1:0,111:32:111:1.00:2
chr11	56143156	rs11228165	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:70,51:31:122:0.421:2	0/1:28,24:31:52:0.462:2	0/1:0,19:30:19:1.00:2	./.	0/1:51,43:31:95:0.457:2	0/1:73,41:31:114:0.360:2	0/1:75,49:31:124:0.395:2	0/1:89,74:31:163:0.454:2	0/1:83,52:32:135:0.385:2	0/1:46,42:31:88:0.477:2	./.
chr11	56143158	rs11228166	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:75,51:28:126:0.405:2	0/1:30,24:28:54:0.444:2	0/1:0,19:29:19:1.00:2	./.	0/1:52,43:28:95:0.453:2	0/1:74,41:29:115:0.357:2	0/1:77,49:29:126:0.389:2	0/1:90,73:29:164:0.448:2	0/1:87,52:29:139:0.374:2	0/1:47,42:28:89:0.472:2	./.
chr11	56143357	rs76949582	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,16:31:82:0.198:2	0/1:25,7:31:32:0.219:2	0/1:4,3:31:7:0.429:2	0/1:65,17:31:82:0.207:2	0/1:47,10:31:57:0.175:2	0/1:66,17:30:83:0.205:2	0/1:53,7:32:60:0.117:2	0/1:66,5:31:71:0.070:2	0/1:69,17:32:86:0.198:2	0/1:53,10:32:63:0.159:2	0/1:80,21:32:101:0.208:2
chr11	56143360	rs79469149	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,16:31:78:0.205:2	0/1:23,7:31:31:0.233:2	0/1:6,3:29:9:0.333:2	0/1:52,17:30:69:0.246:2	0/1:43,10:32:53:0.189:2	0/1:64,16:30:80:0.200:2	0/1:49,7:32:56:0.125:2	0/1:65,5:32:70:0.071:2	0/1:64,17:32:81:0.210:2	0/1:53,10:32:63:0.159:2	0/1:79,21:33:100:0.210:2
chr11	56143424	rs12788990	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,17:30:39:0.436:2	0/1:16,17:30:33:0.515:2	./.	0/1:19,17:33:36:0.472:2	0/1:18,25:32:43:0.581:2	./.	0/1:22,12:32:34:0.353:2	0/1:34,36:32:70:0.514:2
chr11	56143434	rs10791961	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:35,26:33:62:0.426:2	0/1:8,18:33:26:0.692:2	./.	0/1:24,20:33:44:0.455:2	./.	0/1:29,21:33:50:0.420:2	./.	./.	0/1:27,19:33:46:0.413:2	./.	0/1:36,35:33:71:0.493:2
chr11	56143489	rs74711788	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:50,4:26:54:0.074:2	0/1:28,3:32:31:0.097:2	./.	./.	0/1:30,4:31:34:0.118:2	./.	./.	0/1:55,4:28:59:0.068:2	./.	./.	0/1:56,5:32:61:0.082:2
chr11	56143490	rs79803210	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:50,4:30:54:0.074:2	0/1:28,3:31:31:0.097:2	./.	./.	./.	./.	./.	0/1:55,4:30:59:0.068:2	./.	./.	0/1:55,5:28:60:0.083:2
chr11	56143501	rs12272237	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,3:33:48:0.063:2	0/1:30,4:29:34:0.118:2	./.	./.	./.	./.	./.	0/1:48,4:28:52:0.077:2
chr11	56143570	rs11228169	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,43:32:89:0.483:2	0/1:26,23:33:49:0.469:2	0/1:5,6:32:11:0.545:2	0/1:43,54:33:97:0.557:2	0/1:48,48:32:96:0.500:2	0/1:51,44:32:95:0.463:2	0/1:59,51:32:110:0.464:2	0/1:49,50:32:99:0.505:2	0/1:64,36:33:100:0.360:2	0/1:37,27:32:64:0.422:2	0/1:35,42:33:77:0.545:2
chr11	56143592	rs17150411	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:122,23:33:145:0.159:2	0/1:80,11:33:91:0.121:2	0/1:17,9:33:26:0.346:2	./.	0/1:124,22:32:146:0.151:2	0/1:115,30:31:145:0.207:2	0/1:132,26:31:158:0.165:2	0/1:136,29:32:165:0.176:2	0/1:125,33:33:158:0.209:2	0/1:125,21:32:146:0.144:2	./.
chr11	56143690	rs4990123	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:162,7:30:169:0.041:2	0/1:152,17:31:170:0.101:2	./.	0/1:172,6:30:178:0.034:2	0/1:178,5:30:183:0.027:2	0/1:169,6:30:175:0.034:2	0/1:182,5:30:187:0.027:2	0/1:172,11:30:183:0.060:2	0/1:168,7:31:175:0.040:2	./.	0/1:171,7:31:178:0.039:2
chr11	56143696	rs4990122	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:152,9:32:161:0.056:2	./.	./.	./.	./.	./.	0/1:174,6:31:180:0.033:2	0/1:170,5:32:175:0.029:2	./.	./.
chr11	56143699	rs4990121	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:166,4:33:170:0.024:2	0/1:163,9:31:172:0.052:2	./.	0/1:175,4:32:179:0.022:2	0/1:181,4:32:185:0.022:2	./.	./.	0/1:177,6:31:183:0.033:2	0/1:178,5:32:183:0.027:2	./.	./.
chr11	56143966	rs12291978	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,9:32:32:0.281:2	./.	0/1:30,22:30:52:0.423:2
chr11	56143968	rs72925530	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,24:32:47:0.511:2	./.	./.	0/1:14,16:31:30:0.533:2	./.	./.	0/1:11,12:32:23:0.522:2	./.
chr11	56143977	rs12272403	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:19,15:32:34:0.441:2	0/1:12,12:31:24:0.500:2	./.	0/1:19,15:32:34:0.441:2	./.	0/1:14,15:31:29:0.517:2	./.	./.	0/1:19,7:32:26:0.269:2	./.	0/1:25,16:31:41:0.390:2
chr11	56184888	rs998544	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:69,52:31:121:0.430:2	0/1:37,33:32:70:0.471:2	0/1:0,16:30:16:1.00:2	./.	0/1:87,41:31:128:0.320:2	0/1:72,78:31:150:0.520:2	0/1:65,57:31:122:0.467:2	0/1:86,73:31:159:0.459:2	0/1:103,62:31:166:0.376:2	0/1:70,49:32:119:0.412:2	./.
chr11	56185023	rs149197985	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,48:31:102:0.475:2	0/1:30,29:30:59:0.492:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	56185159	rs7930678	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,44:33:91:0.484:2	./.	0/1:75,60:33:135:0.444:2
chr11	56185224	rs12785840	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,37:32:72:0.514:2	0/1:25,14:31:39:0.359:2	./.	0/1:42,32:31:74:0.432:2	0/1:35,48:32:83:0.578:2	./.	0/1:28,14:32:42:0.333:2	0/1:33,39:32:72:0.542:2
chr11	56185327	rs7933772	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,8:29:26:0.308:2	./.	0/1:18,23:33:41:0.561:2
chr11	56185345	rs6591324	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,35:29:35:1.00:2	0/1:0,26:30:26:1.00:2	./.	0/1:21,8:28:29:0.276:2	0/1:18,17:29:35:0.486:2	0/1:0,27:29:27:1.00:2	0/1:13,19:28:32:0.594:2	0/1:20,17:28:37:0.459:2	0/1:0,38:30:38:1.00:2	0/1:9,12:28:21:0.571:2	0/1:14,28:29:42:0.667:2
chr11	56185347	rs7111634	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:21,15:30:36:0.417:2	0/1:19,7:32:26:0.269:2	./.	0/1:21,8:32:29:0.276:2	./.	0/1:12,15:31:27:0.556:2	./.	./.	./.	./.	./.
chr11	56185401	rs7123108	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:32,19:31:51:0.373:2	0/1:19,13:31:32:0.406:2	./.	0/1:29,21:29:50:0.420:2	./.	0/1:12,29:29:41:0.707:2	./.	./.	./.	./.	./.
chr11	56185689	rs7931261	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,5:34:10:0.500:2	./.	./.
chr11	56230069	rs1945237	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:56,51:33:107:0.477:2	0/1:29,26:32:55:0.473:2	./.	0/1:55,57:32:112:0.509:2	./.	0/1:46,51:32:97:0.526:2	./.	./.	./.	./.	./.
chr11	56230120	rs61902868	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:30,28:33:58:0.483:2	0/1:17,13:33:30:0.433:2	./.	0/1:30,35:32:65:0.538:2	./.	0/1:33,28:32:61:0.459:2	./.	./.	./.	./.	./.
chr11	56230245	rs117658855	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,31:31:55:0.564:2	./.	./.	./.	./.	./.
chr11	56230328	rs61902869	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:62,42:32:104:0.404:2	0/1:25,36:32:61:0.590:2	./.	0/1:45,64:31:109:0.587:2	./.	0/1:54,40:31:94:0.426:2	./.	./.	./.	./.	./.
chr11	56230473	rs61902870	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:50,44:33:94:0.468:2	0/1:34,26:32:60:0.433:2	./.	0/1:54,47:32:101:0.465:2	./.	0/1:49,58:32:107:0.542:2	./.	./.	./.	./.	./.
chr11	56230611	rs79837116	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:36,30:32:66:0.455:2	0/1:19,12:31:31:0.387:2	./.	0/1:41,22:31:63:0.349:2	./.	0/1:28,32:32:61:0.533:2	./.	./.	./.	./.	./.
chr11	56230678	rs61902871	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:47,43:31:90:0.478:2	0/1:21,19:31:40:0.475:2	./.	0/1:32,35:32:67:0.522:2	./.	0/1:41,40:32:82:0.494:2	./.	./.	./.	./.	./.
chr11	56237410	rs617315	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,32:28:101:0.317:2	./.	./.	0/1:86,44:28:130:0.338:2
chr11	56237564	rs61902880	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:36,19:32:55:0.345:2	./.	./.	0/1:34,9:30:44:0.209:2	./.	0/1:30,10:31:40:0.250:2	./.	./.	./.	./.	./.
chr11	56237578	rs61902881	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:35,9:33:44:0.205:2	./.	./.	0/1:24,6:32:30:0.200:2	./.	0/1:32,4:32:36:0.111:2	./.	./.	./.	./.	./.
chr11	56237722	rs605734	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,48:32:100:0.480:2	./.	./.	0/1:74,61:32:135:0.452:2
chr11	56237728	rs79240946	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:37,26:32:63:0.413:2	0/1:27,24:32:51:0.471:2	./.	0/1:37,40:31:77:0.519:2	./.	0/1:34,41:31:75:0.547:2	./.	./.	./.	./.	./.
chr11	56237966	rs77400854	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:7,11:33:18:0.611:2	0/1:4,4:31:8:0.500:2	./.	0/1:7,12:33:19:0.632:2	./.	0/1:12,6:32:18:0.333:2	./.	./.	./.	./.	./.
chr11	56258310	rs150358569	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:113,9:27:122:0.074:2	./.	./.	0/1:123,4:33:127:0.031:2	./.	0/1:139,7:31:146:0.048:2	./.	./.	./.	./.	./.
chr11	56309846	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:31:145:0.028:2
chr11	56309896	rs17547207	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:41,35:33:76:0.461:2	0/1:26,24:33:50:0.480:2	./.	0/1:48,46:33:94:0.489:2	./.	0/1:42,34:32:76:0.447:2	./.	./.	./.	./.	./.
chr11	56309987	rs149604047	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,37:31:79:0.468:2	0/1:21,26:31:47:0.553:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	56310222	rs628524	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:31:70:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,69:30:69:1.00:2	0/1:0,83:30:83:1.00:2	0/1:0,79:30:79:1.00:2	0/1:0,84:30:84:1.00:2	0/1:1,64:30:65:0.985:2	0/1:58,31:31:89:0.348:2	0/1:0,70:31:70:1.00:2	0/1:0,69:31:69:1.00:2
chr11	56310356	rs17547284	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:35,19:32:54:0.352:2	0/1:21,9:32:30:0.300:2	./.	0/1:30,33:32:63:0.524:2	./.	0/1:27,24:31:51:0.471:2	./.	./.	./.	./.	./.
chr11	56310497	rs72913727	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,32:32:65:0.492:2	0/1:26,32:31:58:0.552:2	0/1:32,30:31:62:0.484:2	0/1:32,31:32:63:0.492:2	./.	./.	0/1:35,24:32:59:0.407:2	0/1:28,13:31:41:0.317:2
chr11	56344260	rs10896488	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,43:33:81:0.531:2	./.	./.	0/1:56,56:32:112:0.500:2
chr11	56344320	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,42:32:145:0.290:2	./.	./.	./.	./.	./.
chr11	56344377	rs2852415	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:119,4:33:123:0.033:2	./.	./.	./.	./.	./.	./.
chr11	56344993	rs10792043	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,92:32:179:0.514:2	0/1:61,59:32:120:0.492:2	0/1:1,16:31:17:0.941:2	0/1:118,81:31:199:0.407:2	0/1:2,114:31:116:0.983:2	0/1:106,81:31:187:0.433:2	0/1:5,154:31:159:0.969:2	0/1:5,168:31:173:0.971:2	0/1:106,83:32:189:0.439:2	0/1:2,154:31:156:0.987:2	0/1:4,180:32:184:0.978:2
chr11	56345102	rs372989747	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	56380095	rs200341456	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:33:186:0.022:2	./.	./.	./.
chr11	56380134	rs4939078	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,22:31:22:1.00:2	./.	0/1:39,52:31:91:0.571:2	./.	0/1:66,57:32:123:0.463:2	0/1:61,71:32:132:0.538:2	./.	0/1:83,46:32:129:0.357:2	./.
chr11	56380158	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:33:172:0.023:2	./.	./.
chr11	56380594	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:130,4:32:134:0.030:2	./.	./.	./.	./.	./.	./.
chr11	56380774	rs200578897	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:179,4:32:183:0.022:2	./.	0/1:193,4:32:197:0.020:2	0/1:190,7:32:197:0.036:2	./.	./.	./.
chr11	56380971	rs151301846	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,64:31:144:0.444:2	0/1:52,65:32:117:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	56409010	rs61747872	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,11:33:32:0.344:2	./.	./.	0/1:30,14:32:44:0.318:2	./.	./.	./.
chr11	56409603	rs11606499	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,20:31:41:0.488:2	./.	./.
chr11	56431216	rs11228710	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,157:32:157:1.00:2	0/1:0,90:32:90:1.00:2	0/1:2,18:31:20:0.900:2	0/1:76,80:32:156:0.513:2	0/1:63,80:31:143:0.559:2	0/1:62,77:31:139:0.554:2	0/1:60,69:32:129:0.535:2	0/1:1,171:31:172:0.994:2	0/1:89,80:33:169:0.473:2	0/1:54,54:32:108:0.500:2	0/1:98,97:32:195:0.497:2
chr11	56431407	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:32:146:0.027:2
chr11	56431834	rs56067375	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,77:33:144:0.535:2	0/1:78,61:32:139:0.439:2	0/1:72,73:32:145:0.503:2	0/1:76,67:32:143:0.469:2	./.	./.	0/1:53,57:32:110:0.518:2	0/1:95,73:32:168:0.435:2
chr11	56467881	rs73474900	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,13:32:44:0.295:2	0/1:26,14:32:40:0.350:2	0/1:1,3:30:4:0.750:2	0/1:30,26:32:56:0.464:2	0/1:38,29:32:67:0.433:2	0/1:35,32:31:67:0.478:2	0/1:55,17:32:72:0.236:2	0/1:51,29:32:80:0.363:2	0/1:30,20:32:50:0.400:2	0/1:36,20:31:56:0.357:2	0/1:31,22:31:53:0.415:2
chr11	56467926	rs1704284	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,32:32:70:0.464:2	0/1:30,23:32:53:0.434:2	0/1:5,9:32:14:0.643:2	0/1:45,44:32:89:0.494:2	0/1:55,46:32:101:0.455:2	0/1:51,53:32:104:0.510:2	0/1:90,32:32:122:0.262:2	0/1:85,49:32:134:0.366:2	0/1:46,43:33:89:0.483:2	0/1:45,28:32:73:0.384:2	0/1:41,42:32:83:0.506:2
chr11	56467945	rs36184181	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,23:33:84:0.274:2	0/1:38,16:32:54:0.296:2	0/1:5,9:29:14:0.643:2	0/1:83,12:32:95:0.126:2	0/1:78,22:31:100:0.220:2	0/1:91,16:33:107:0.150:2	0/1:124,10:32:134:0.075:2	0/1:116,25:31:141:0.177:2	./.	0/1:73,17:33:90:0.189:2	./.
chr11	56468020	rs532637	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,45:31:79:0.570:2	0/1:15,17:30:32:0.531:2	./.	0/1:3,59:30:62:0.952:2	0/1:28,25:30:53:0.472:2	0/1:0,62:30:62:1.00:2	0/1:32,41:31:73:0.562:2	0/1:90,16:30:106:0.151:2	0/1:29,45:32:74:0.608:2	0/1:44,33:30:77:0.429:2	0/1:36,37:31:73:0.507:2
chr11	56468021	rs532635	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:63,16:29:79:0.203:2	0/1:30,3:32:33:0.091:2	./.	0/1:57,9:29:67:0.136:2	0/1:44,8:29:52:0.154:2	0/1:57,11:29:68:0.162:2	0/1:58,15:30:74:0.205:2	0/1:97,12:29:109:0.110:2	0/1:57,17:31:74:0.230:2	0/1:68,12:30:80:0.150:2	0/1:66,10:29:76:0.132:2
chr11	56468044	rs3975155	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,35:31:68:0.515:2	0/1:20,18:32:38:0.474:2	0/1:0,9:32:9:1.00:2	0/1:54,8:27:62:0.129:2	0/1:16,25:31:41:0.610:2	./.	0/1:22,22:31:45:0.500:2	0/1:2,82:32:84:0.976:2	0/1:42,27:32:69:0.391:2	0/1:29,34:31:63:0.540:2	0/1:42,34:32:76:0.447:2
chr11	56468047	rs2865519	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,33:27:67:0.493:2	0/1:18,18:28:36:0.500:2	0/1:0,9:28:9:1.00:2	0/1:54,8:28:62:0.129:2	0/1:16,25:29:41:0.610:2	./.	0/1:23,22:28:45:0.489:2	0/1:2,82:28:84:0.976:2	0/1:40,27:29:67:0.403:2	0/1:29,33:28:62:0.532:2	0/1:40,34:29:74:0.459:2
chr11	56468048	rs2865520	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:32:66:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,65:30:65:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,84:31:84:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,73:31:73:1.00:2
chr11	56468111	rs602224	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:111,22:31:133:0.165:2	0/1:58,5:32:63:0.079:2	0/1:9,8:31:17:0.471:2	0/1:97,24:32:121:0.198:2	0/1:48,32:31:80:0.400:2	0/1:110,24:31:135:0.179:2	0/1:60,37:31:97:0.381:2	0/1:97,64:31:161:0.398:2	0/1:100,50:32:150:0.333:2	0/1:67,47:31:114:0.412:2	0/1:81,34:31:115:0.296:2
chr11	56468155	rs11228732	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,36:33:97:0.371:2	0/1:81,33:32:114:0.289:2	0/1:63,40:32:103:0.388:2	0/1:79,26:32:105:0.248:2	./.	0/1:79,60:32:139:0.432:2	0/1:71,42:32:113:0.372:2	0/1:75,39:30:114:0.342:2
chr11	56468198	rs4990194	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:62,8:26:70:0.114:2	./.	./.	0/1:63,5:31:68:0.074:2	./.	0/1:52,9:29:61:0.148:2	0/1:97,5:26:102:0.049:2	./.	./.	./.	./.
chr11	56468200	rs4990195	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:65,9:31:74:0.122:2	./.	./.	0/1:64,5:31:69:0.072:2	./.	0/1:54,9:31:63:0.143:2	./.	./.	./.	./.	./.
chr11	56468202	rs4990196	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:65,9:27:74:0.122:2	./.	./.	0/1:64,5:31:69:0.072:2	./.	0/1:56,9:29:65:0.138:2	0/1:95,5:25:101:0.050:2	./.	./.	./.	./.
chr11	56468212	rs591369	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,32:32:92:0.348:2	0/1:44,17:32:61:0.279:2	0/1:12,12:31:24:0.500:2	0/1:70,24:30:94:0.255:2	0/1:118,12:30:130:0.092:2	0/1:48,25:30:73:0.342:2	0/1:98,13:30:111:0.117:2	0/1:105,21:29:126:0.167:2	0/1:104,15:32:119:0.126:2	0/1:109,19:31:128:0.148:2	0/1:109,13:31:122:0.107:2
chr11	56468258	rs78340277	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:121,45:31:166:0.271:2	./.	./.	./.	./.	./.	0/1:116,48:31:164:0.293:2
chr11	56468259	rs503776	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,56:31:139:0.403:2	0/1:64,63:32:127:0.496:2	0/1:16,25:33:41:0.610:2	0/1:67,81:32:148:0.547:2	0/1:123,44:32:167:0.263:2	0/1:72,77:32:149:0.517:2	0/1:68,101:32:169:0.598:2	0/1:72,96:32:168:0.571:2	0/1:75,87:33:162:0.537:2	0/1:68,95:32:163:0.583:2	0/1:117,46:32:164:0.282:2
chr11	56468368	rs11228733	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,76:33:147:0.517:2	0/1:76,65:32:141:0.461:2	0/1:16,12:33:28:0.429:2	0/1:91,58:32:149:0.389:2	0/1:88,52:32:140:0.371:2	0/1:76,73:32:149:0.490:2	0/1:108,67:33:175:0.383:2	0/1:114,45:33:159:0.283:2	0/1:93,74:33:167:0.443:2	0/1:91,53:33:144:0.368:2	0/1:121,44:33:166:0.267:2
chr11	56468403	rs11228734	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:73,39:30:112:0.348:2	0/1:54,39:30:93:0.419:2	./.	0/1:77,30:30:107:0.280:2	0/1:75,23:28:99:0.235:2	0/1:84,35:29:119:0.294:2	0/1:101,22:30:123:0.179:2	0/1:116,20:28:137:0.147:2	0/1:89,25:30:114:0.219:2	0/1:83,26:30:109:0.239:2	0/1:144,25:30:170:0.148:2
chr11	56468416	rs11228735	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:75,23:31:98:0.235:2	0/1:53,26:31:79:0.329:2	./.	0/1:73,20:31:93:0.215:2	0/1:82,18:30:100:0.180:2	0/1:82,22:30:104:0.212:2	0/1:97,13:29:110:0.118:2	0/1:119,9:27:128:0.070:2	0/1:88,18:31:106:0.170:2	0/1:81,12:31:94:0.129:2	0/1:150,17:30:167:0.102:2
chr11	56468493	rs10792053	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:59,15:31:74:0.203:2	0/1:32,12:31:44:0.273:2	./.	0/1:76,17:30:93:0.183:2	0/1:92,16:30:108:0.148:2	0/1:80,11:28:91:0.121:2	0/1:100,11:30:112:0.099:2	0/1:113,24:29:137:0.175:2	0/1:62,14:30:76:0.184:2	0/1:70,7:27:77:0.091:2	0/1:105,10:30:115:0.087:2
chr11	56468554	rs12420076	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:56,17:33:73:0.233:2	0/1:25,18:32:43:0.419:2	./.	0/1:67,35:32:102:0.343:2	0/1:79,22:32:101:0.218:2	0/1:96,17:32:113:0.150:2	0/1:102,23:33:125:0.184:2	0/1:97,44:33:141:0.312:2	0/1:58,37:32:95:0.389:2	0/1:80,22:31:102:0.216:2	0/1:115,18:33:133:0.135:2
chr11	56468560	rs10896516	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:62,14:29:76:0.184:2	0/1:26,13:28:39:0.333:2	./.	0/1:71,31:29:102:0.304:2	0/1:78,15:26:93:0.161:2	0/1:92,15:26:107:0.140:2	0/1:95,18:27:113:0.159:2	0/1:100,39:28:139:0.281:2	0/1:56,30:29:86:0.349:2	0/1:79,21:29:100:0.210:2	0/1:114,12:30:126:0.095:2
chr11	56468561	rs10896517	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:64,14:29:78:0.179:2	0/1:27,13:30:40:0.325:2	./.	0/1:69,31:29:100:0.310:2	0/1:77,15:29:92:0.163:2	0/1:91,15:28:106:0.142:2	0/1:94,18:30:112:0.161:2	0/1:101,38:30:141:0.273:2	0/1:56,30:29:86:0.349:2	0/1:78,21:30:99:0.212:2	0/1:111,12:28:124:0.098:2
chr11	56468637	rs76884192	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:65,11:32:76:0.145:2	0/1:36,4:32:40:0.100:2	./.	0/1:81,20:31:101:0.198:2	0/1:61,10:31:71:0.141:2	0/1:71,16:31:87:0.184:2	0/1:77,8:32:85:0.094:2	0/1:66,26:31:92:0.283:2	0/1:77,21:32:98:0.214:2	0/1:71,21:31:92:0.228:2	0/1:97,12:32:109:0.110:2
chr11	56468638	rs7121276	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,32:33:99:0.323:2	./.	./.
chr11	56468646	rs78493274	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:64,11:32:75:0.147:2	0/1:38,4:31:42:0.095:2	./.	0/1:84,20:31:104:0.192:2	0/1:55,10:30:65:0.154:2	0/1:76,16:31:92:0.174:2	0/1:67,8:30:75:0.107:2	0/1:70,25:30:95:0.263:2	0/1:83,22:31:105:0.210:2	0/1:77,21:31:98:0.214:2	0/1:100,12:32:112:0.107:2
chr11	56468720	rs66943455	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:29:52:0.077:2	./.	./.
chr11	56508525	rs556056	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:14,15:34:29:0.517:2	0/1:12,11:32:23:0.478:2	./.	./.	./.	./.	0/1:13,18:31:31:0.581:2	0/1:13,34:32:47:0.723:2	0/1:0,29:33:29:1.00:2	0/1:14,24:33:38:0.632:2	0/1:28,24:32:52:0.462:2
chr11	56510623	rs513873	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:34,31:32:65:0.477:2	0/1:32,20:32:52:0.385:2	./.	./.	./.	./.	./.	0/1:33,47:32:80:0.588:2	0/1:0,83:32:83:1.00:2	./.	0/1:46,40:32:86:0.465:2
chr11	56510672	rs577576	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:32:66:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,86:33:86:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,65:33:65:1.00:2
chr11	56510694	rs1397053	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,31:29:57:0.544:2	0/1:0,51:29:51:1.00:2	./.	./.
chr11	56756399	rs10896563	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,69:30:144:0.479:2	./.	./.	./.	./.	./.	0/1:73,66:31:139:0.475:2	./.
chr11	56756415	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:160,4:32:164:0.024:2	./.	./.	./.	./.	./.	./.
chr11	56756664	rs2853083	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,3:29:13:0.231:2	0/1:0,88:30:88:1.00:2	0/1:52,34:30:86:0.395:2	./.	0/1:51,35:30:86:0.407:2	0/1:51,27:30:78:0.346:2	./.	0/1:50,39:32:89:0.438:2	./.
chr11	56756743	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,69:31:178:0.388:2	./.	./.	./.
chr11	56756744	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,69:31:180:0.383:2	./.	./.	./.
chr11	56949507	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,6:27:74:0.081:2	./.
chr11	56949691	rs12364102	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,43:31:98:0.439:2	./.	./.	./.	./.	./.	0/1:36,30:30:66:0.455:2	./.
chr11	56954846	rs716745	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:79,64:31:143:0.448:2	0/1:40,38:31:78:0.487:2	./.	0/1:111,77:31:188:0.410:2	0/1:109,90:31:199:0.452:2	./.	./.	./.	./.	0/1:71,88:31:159:0.553:2	./.
chr11	57004131	rs150922621	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,6:31:11:0.545:2	0/1:2,5:32:7:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	57004344	rs948847	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,28:30:73:0.384:2	0/1:17,6:31:23:0.261:2	0/1:0,7:30:7:1.00:2	0/1:49,48:30:98:0.495:2	0/1:52,47:30:99:0.475:2	0/1:0,70:30:70:1.00:2	0/1:1,85:31:86:0.988:2	0/1:46,48:31:94:0.511:2	0/1:0,76:31:76:1.00:2	0/1:32,42:31:74:0.568:2	0/1:0,84:32:84:1.00:2
chr11	57004577	rs11544374	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:19,19:33:38:0.500:2	0/1:17,12:32:29:0.414:2	./.	./.	0/1:30,19:31:49:0.388:2	./.	./.	0/1:38,28:31:66:0.424:2	./.	./.	./.
chr11	57076524	rs151252290	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,18:32:53:0.340:2
chr11	57076820	rs78489201	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,13:29:37:0.351:2	0/1:10,10:32:20:0.500:2	./.	./.	0/1:31,14:32:45:0.311:2	0/1:19,31:33:50:0.620:2	./.	./.	./.	./.	./.
chr11	57077351	rs200570663	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,10:16:94:0.106:2	./.	./.	0/1:83,10:16:93:0.108:2	./.	./.	0/1:63,10:16:73:0.137:2
chr11	57077464	rs10896602	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:40,49:33:89:0.551:2	0/1:33,36:32:69:0.522:2	./.	./.	0/1:48,61:33:109:0.560:2	0/1:69,74:33:143:0.517:2	0/1:53,73:33:127:0.579:2	0/1:84,67:33:151:0.444:2	./.	./.	0/1:80,67:33:147:0.456:2
chr11	57077618	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr11	57081146	rs12364724	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,38:30:71:0.535:2	./.	./.	./.	./.	./.	0/1:36,22:30:58:0.379:2	./.
chr11	57081197	rs4939134	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,47:32:108:0.435:2	0/1:22,26:32:48:0.542:2	0/1:0,14:32:14:1.00:2	0/1:81,65:32:146:0.445:2	0/1:83,50:32:134:0.376:2	0/1:52,38:30:90:0.422:2	0/1:64,69:31:133:0.519:2	./.	0/1:0,104:33:104:1.00:2	0/1:42,55:32:97:0.567:2	0/1:62,32:30:94:0.340:2
chr11	57087983	rs34448143	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,23:31:64:0.359:2	./.	./.	./.	./.	./.
chr11	57100225	rs2230650	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,69:30:132:0.523:2	./.	./.	./.	./.	./.	./.
chr11	57102096	rs2230649	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,22:32:50:0.440:2	./.	./.	./.	./.	./.	0/1:14,16:32:30:0.533:2	./.
chr11	57137371	rs2276039	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,30:31:65:0.469:2	0/1:28,25:31:53:0.472:2	0/1:0,9:32:9:1.00:2	0/1:82,65:31:147:0.442:2	0/1:70,55:31:125:0.440:2	0/1:60,60:31:121:0.500:2	0/1:95,51:31:146:0.349:2	0/1:89,66:31:155:0.426:2	0/1:57,57:32:114:0.500:2	0/1:50,56:32:106:0.528:2	0/1:76,36:32:112:0.321:2
chr11	57137424	rs2276038	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,25:31:54:0.463:2	0/1:18,20:31:38:0.526:2	0/1:0,6:31:6:1.00:2	0/1:44,39:31:83:0.470:2	0/1:36,27:31:63:0.429:2	0/1:38,29:30:68:0.433:2	0/1:38,31:30:69:0.449:2	0/1:59,32:31:91:0.352:2	0/1:32,38:32:70:0.543:2	0/1:26,34:31:60:0.567:2	0/1:0,58:31:58:1.00:2
chr11	57146225	rs34108746	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:43,30:33:73:0.411:2	0/1:22,19:32:41:0.463:2	./.	./.	0/1:61,50:32:111:0.450:2	0/1:58,45:33:103:0.437:2	./.	./.	./.	./.	0/1:40,42:32:82:0.512:2
chr11	57147016	rs540687	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:31:80:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,12:32:12:1.00:2	0/1:1,83:32:84:0.988:2	0/1:0,49:32:49:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,66:32:66:1.00:2
chr11	57148175	rs669661	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,133:29:133:1.00:2	0/1:0,93:29:93:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,182:30:182:1.00:2	0/1:0,182:30:182:1.00:2	0/1:2,185:29:187:0.989:2	0/1:0,178:30:178:1.00:2	0/1:0,193:29:193:1.00:2	0/1:0,189:29:189:1.00:2	0/1:0,151:30:151:1.00:2	0/1:0,136:29:136:1.00:2
chr11	57155001	rs536455	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:31:54:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,68:30:68:1.00:2	0/1:0,84:31:84:1.00:2	0/1:0,105:31:105:1.00:2	0/1:0,100:31:100:1.00:2	0/1:0,93:31:93:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,82:31:82:1.00:2
chr11	57155288	rs630396	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:29:77:1.00:2	0/1:0,45:28:45:1.00:2	0/1:0,13:29:13:1.00:2	0/1:0,101:29:101:1.00:2	0/1:0,125:29:125:1.00:2	0/1:0,104:29:104:1.00:2	0/1:0,87:29:87:1.00:2	0/1:0,84:29:84:1.00:2	0/1:0,101:30:101:1.00:2	0/1:0,77:28:77:1.00:2	0/1:1,84:29:85:0.988:2
chr11	57157405	rs490358	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,32:33:75:0.427:2	0/1:19,13:32:32:0.406:2	0/1:0,8:33:8:1.00:2	0/1:0,55:33:55:1.00:2	0/1:0,47:32:47:1.00:2	0/1:2,57:32:59:0.966:2	0/1:31,11:32:42:0.262:2	0/1:43,22:32:65:0.338:2	0/1:0,66:33:66:1.00:2	0/1:1,42:32:43:0.977:2	0/1:0,48:33:48:1.00:2
chr11	57235409	rs61745214	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,21:31:43:0.488:2
chr11	57235410	rs61745215	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,21:30:43:0.488:2
chr11	57244366	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	57261522	rs141990229	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,48:32:103:0.466:2
chr11	57310307	rs80123614	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:29:6:0.667:2	./.	./.	./.	./.	0/1:21,34:29:55:0.618:2	./.	./.	0/1:31,27:31:58:0.466:2
chr11	57313469	rs12223229	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,56:29:56:1.00:2	0/1:1,36:29:37:0.973:2	./.	./.	0/1:16,15:29:31:0.484:2	0/1:0,51:28:51:1.00:2	0/1:26,23:29:49:0.469:2	./.	./.	0/1:35,19:29:54:0.352:2	./.
chr11	57381989	rs4926	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,12:31:12:1.00:2	0/1:58,24:31:82:0.293:2	./.	0/1:46,44:31:90:0.489:2	./.	0/1:53,55:32:108:0.509:2	0/1:61,58:32:119:0.487:2	0/1:38,33:32:71:0.465:2	./.
chr11	57382029	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:33:112:0.036:2	./.	./.
chr11	57428812	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:184,4:32:188:0.021:2	./.	./.	./.	./.	./.	./.
chr11	57456006	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:29:61:0.066:2	./.
chr11	57460132	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:32:77:0.052:2
chr11	57463500	rs1783978	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,44:33:46:0.957:2	0/1:0,16:32:16:1.00:2	0/1:0,5:33:5:1.00:2	0/1:15,16:34:31:0.516:2	./.	0/1:0,38:33:38:1.00:2	0/1:30,27:33:57:0.474:2	0/1:19,22:33:41:0.537:2	0/1:29,12:35:41:0.293:2	0/1:31,10:33:41:0.244:2	./.
chr11	57464253	rs150928534	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,30:30:64:0.469:2	./.
chr11	57479502	rs376584624	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,17:31:33:0.515:2	./.	./.	./.	./.	./.	./.
chr11	57505438	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,8:30:178:0.045:2	./.
chr11	57509413	rs1127680	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,4:31:14:0.286:2	./.	./.	./.	./.
chr11	57563991	rs10896644	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,52:31:113:0.460:2	0/1:0,114:31:114:1.00:2	./.	0/1:77,58:31:135:0.430:2	0/1:80,68:31:148:0.459:2	0/1:48,72:32:120:0.600:2	0/1:68,74:32:142:0.521:2	0/1:0,116:31:116:1.00:2
chr11	57571232	rs11229137	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:31:77:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,94:29:94:1.00:2	0/1:0,87:30:87:1.00:2	0/1:0,107:30:107:1.00:2	0/1:0,97:30:97:1.00:2	0/1:0,91:30:91:1.00:2	0/1:0,109:31:109:1.00:2	0/1:0,80:30:80:1.00:2	0/1:0,76:31:76:1.00:2
chr11	57798723	rs921135	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,99:31:172:0.576:2	0/1:82,64:31:146:0.438:2	./.	./.	./.	0/1:117,79:32:196:0.403:2	0/1:82,71:32:153:0.464:2	./.	0/1:90,81:33:171:0.474:2	0/1:93,68:32:161:0.422:2	./.
chr11	57798942	rs2513726	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,82:32:190:0.432:2	0/1:86,55:32:141:0.390:2	./.	./.	./.	0/1:98,91:32:189:0.481:2	0/1:113,81:32:194:0.418:2	./.	0/1:96,95:33:191:0.497:2	0/1:106,92:32:198:0.465:2	./.
chr11	57799183	rs7123727	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,26:30:28:0.929:2	0/1:97,83:31:182:0.461:2	./.	./.	./.	0/1:104,83:31:187:0.444:2	./.	./.	./.
chr11	57799281	rs142616437	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,47:32:124:0.379:2	./.
chr11	57799371	rs1374570	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,29:33:55:0.527:2	0/1:14,23:32:37:0.622:2	0/1:0,8:30:8:1.00:2	0/1:22,22:32:44:0.500:2	0/1:11,19:33:30:0.633:2	0/1:24,29:33:53:0.547:2	0/1:21,23:33:44:0.523:2	0/1:1,42:32:43:0.977:2	./.	0/1:23,17:32:40:0.425:2	0/1:27,35:31:62:0.565:2
chr11	57947163	rs111629598	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,92:32:184:0.500:2
chr11	57947264	rs11229273	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:99,82:30:181:0.453:2	0/1:72,75:29:147:0.510:2	0/1:25,12:28:37:0.324:2	./.	./.	./.	./.	./.	0/1:103,88:31:191:0.461:2	0/1:94,78:28:172:0.453:2	0/1:103,83:30:186:0.446:2
chr11	57948374	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,22:32:44:0.500:2	./.	./.
chr11	57948796	rs72923632	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,4:31:16:0.250:2	./.	./.	0/1:76,52:30:128:0.406:2	0/1:74,62:31:136:0.456:2	./.	./.	./.	./.
chr11	57948952	rs2443443	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,16:32:16:1.00:2	0/1:0,14:32:14:1.00:2	./.	./.	0/1:13,8:31:21:0.381:2	0/1:14,7:30:21:0.333:2	./.	0/1:18,13:31:31:0.419:2	0/1:13,5:31:18:0.278:2	0/1:0,18:31:18:1.00:2	0/1:0,28:31:28:1.00:2
chr11	57958181	rs143799148	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,10:32:25:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	57958497	rs34337292	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,98:30:193:0.508:2	./.	0/1:99,97:31:196:0.495:2	./.	0/1:93,102:31:195:0.523:2	./.
chr11	57958775	rs7120468	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:49,52:31:101:0.515:2	0/1:26,41:32:67:0.612:2	./.	./.	0/1:56,58:31:114:0.509:2	./.	./.	./.	./.	0/1:41,39:32:80:0.488:2	0/1:57,51:32:108:0.472:2
chr11	57970967	rs138762515	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,9:32:89:0.101:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:32:78:0.051:2
chr11	57970980	rs11229277	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:43,47:32:91:0.522:2	0/1:33,31:32:64:0.484:2	0/1:5,6:32:11:0.545:2	./.	./.	./.	./.	./.	./.	./.	0/1:47,33:31:80:0.413:2
chr11	57970981	rs11229278	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:44,48:30:92:0.522:2	0/1:34,31:31:65:0.477:2	0/1:4,6:31:10:0.600:2	./.	./.	./.	./.	./.	./.	./.	0/1:48,33:30:81:0.407:2
chr11	57971171	rs200697120	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:123,32:32:155:0.206:2	0/1:98,17:31:115:0.148:2	0/1:18,5:32:23:0.217:2	./.	0/1:124,7:32:131:0.053:2	./.	./.	./.	./.	0/1:121,21:32:142:0.148:2	0/1:172,24:31:197:0.122:2
chr11	57971190	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:145,11:32:156:0.071:2	0/1:96,10:32:106:0.094:2	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:32:123:0.033:2	0/1:166,6:31:172:0.035:2
chr11	57971195	rs11229279	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:78,77:32:155:0.497:2	0/1:63,41:32:104:0.394:2	./.	./.	0/1:71,60:31:131:0.458:2	./.	./.	./.	./.	0/1:63,59:31:122:0.484:2	0/1:103,62:32:165:0.376:2
chr11	57971201	rs11229280	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:7,139:32:146:0.952:2	0/1:7,94:31:101:0.931:2	0/1:8,10:32:18:0.556:2	./.	0/1:73,62:31:135:0.459:2	./.	./.	./.	./.	0/1:62,60:32:122:0.492:2	0/1:5,158:31:163:0.969:2
chr11	57971273	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.	./.	./.	./.	./.
chr11	57971478	rs11229281	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:94,68:32:162:0.420:2	0/1:61,52:32:113:0.460:2	0/1:13,11:31:24:0.458:2	./.	./.	./.	./.	./.	./.	./.	0/1:101,81:33:182:0.445:2
chr11	57971512	rs147374552	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,67:32:152:0.441:2	./.	./.	./.	./.
chr11	57982229	rs1966836	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,72:33:72:1.00:2	0/1:0,54:33:54:1.00:2	0/1:4,4:34:8:0.500:2	./.	0/1:20,13:32:33:0.394:2	0/1:37,23:32:60:0.383:2	./.	0/1:28,29:33:57:0.509:2	./.	0/1:0,42:33:43:1.00:2	0/1:0,104:33:104:1.00:2
chr11	57982247	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:33:96:0.042:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	57982266	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:32:94:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	57982559	rs146969930	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,10:31:25:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	57982584	rs1966835	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,174:32:174:1.00:2	0/1:2,159:32:161:0.988:2	0/1:12,9:33:21:0.429:2	./.	0/1:101,65:32:166:0.392:2	./.	./.	./.	./.	0/1:99,75:33:174:0.431:2	0/1:0,175:33:175:1.00:2
chr11	57982620	rs1966834	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,146:29:146:1.00:2	0/1:3,132:30:135:0.978:2	./.	./.	0/1:80,65:30:147:0.448:2	./.	./.	./.	./.	0/1:78,69:29:148:0.469:2	0/1:0,165:30:165:1.00:2
chr11	57982726	rs1993089	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,101:30:103:0.981:2	0/1:1,86:31:88:0.989:2	0/1:5,4:30:9:0.444:2	./.	0/1:112,42:29:154:0.273:2	./.	./.	./.	./.	0/1:122,46:30:168:0.274:2	0/1:0,108:30:108:1.00:2
chr11	57982763	rs1993088	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,64:32:65:0.985:2	0/1:1,43:32:44:0.977:2	./.	./.	0/1:108,15:30:123:0.122:2	./.	./.	./.	./.	0/1:100,24:32:124:0.194:2	0/1:0,67:32:67:1.00:2
chr11	57982832	rs2867400	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,49:32:50:0.980:2	0/1:0,32:32:32:1.00:2	./.	./.	0/1:44,11:30:55:0.200:2	./.	./.	./.	./.	0/1:38,16:32:54:0.296:2	0/1:0,57:31:57:1.00:2
chr11	57982896	rs2903566	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,73:31:73:1.00:2	0/1:0,54:31:54:1.00:2	0/1:4,6:30:10:0.600:2	./.	0/1:24,23:30:47:0.489:2	./.	0/1:79,4:30:83:0.048:2	./.	./.	0/1:31,24:32:55:0.436:2	0/1:1,104:31:105:0.990:2
chr11	57983162	rs7103026	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,40:31:84:0.476:2	./.	0/1:63,23:33:86:0.267:2	./.	0/1:28,30:32:58:0.517:2	./.
chr11	57983194	rs7103033	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:43,35:33:78:0.449:2	0/1:26,30:32:56:0.536:2	./.	./.	0/1:27,15:31:42:0.357:2	./.	./.	./.	./.	0/1:26,19:32:46:0.422:2	0/1:61,46:31:108:0.430:2
chr11	57995777	rs11229301	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:51,34:30:86:0.400:2	0/1:33,27:31:60:0.450:2	0/1:0,18:31:18:1.00:2	./.	./.	0/1:78,71:30:149:0.477:2	./.	./.	./.	./.	./.
chr11	57996084	rs61902844	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:29:2:1.00:2	0/1:16,34:30:50:0.680:2	0/1:30,26:29:56:0.464:2	0/1:38,24:30:62:0.387:2	0/1:0,38:29:38:1.00:2	0/1:0,40:30:40:1.00:2	0/1:1,61:32:62:0.984:2	0/1:18,14:31:32:0.438:2	./.
chr11	57996312	rs4245219	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,161:32:161:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,171:32:171:1.00:2	0/1:0,147:32:147:1.00:2	0/1:1,170:32:171:0.994:2	0/1:0,136:32:136:1.00:2	0/1:0,165:32:165:1.00:2	0/1:1,161:33:162:0.994:2	0/1:0,141:32:141:1.00:2	0/1:0,131:32:131:1.00:2
chr11	58034543	rs10792156	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:98,69:32:168:0.413:2	0/1:66,39:32:105:0.371:2	./.	0/1:98,79:32:178:0.446:2	0/1:107,82:33:189:0.434:2	./.	./.	./.	./.	0/1:94,94:33:188:0.500:2	0/1:0,171:33:171:1.00:2
chr11	58125620	rs4127353	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:33:51:1.00:2	0/1:1,14:32:15:0.933:2	0/1:0,5:33:5:1.00:2	0/1:22,14:32:36:0.389:2	0/1:0,36:32:36:1.00:2	0/1:17,29:32:46:0.630:2	0/1:13,18:32:31:0.581:2	./.	0/1:0,41:33:42:1.00:2	0/1:18,21:32:39:0.538:2	0/1:0,51:32:51:1.00:2
chr11	58126305	rs4939208	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,111:30:111:1.00:2	0/1:1,73:31:74:0.986:2	0/1:0,19:30:19:1.00:2	0/1:60,71:30:131:0.542:2	0/1:0,103:29:103:1.00:2	0/1:70,42:30:112:0.375:2	0/1:79,47:30:126:0.373:2	./.	0/1:0,125:30:125:1.00:2	0/1:51,62:30:113:0.549:2	0/1:0,122:30:122:1.00:2
chr11	58169996	rs12279895	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,97:33:196:0.495:2	./.	0/1:105,82:32:187:0.439:2	0/1:101,79:33:180:0.439:2	0/1:0,171:32:171:1.00:2	./.	0/1:81,85:32:166:0.512:2	./.
chr11	58170025	rs12271646	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,80:31:172:0.465:2	./.	0/1:86,78:30:164:0.476:2	0/1:88,72:30:161:0.450:2	0/1:0,147:30:147:1.00:2	./.	0/1:77,81:31:158:0.513:2	./.
chr11	58170143	rs11229409	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,25:32:58:0.431:2	./.	0/1:24,34:32:58:0.586:2	0/1:19,23:32:42:0.548:2	0/1:0,62:32:62:1.00:2	./.	0/1:16,30:33:46:0.652:2	./.
chr11	58170291	rs11229410	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,14:33:37:0.378:2	./.	0/1:23,9:31:32:0.281:2	0/1:7,5:32:12:0.417:2	0/1:0,33:32:33:1.00:2	./.	0/1:18,19:32:37:0.514:2	./.
chr11	58170342	rs11229411	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,14:32:46:0.304:2	./.	0/1:23,13:31:36:0.361:2	0/1:15,9:32:24:0.375:2	0/1:0,38:32:38:1.00:2	./.	0/1:29,16:30:45:0.356:2	./.
chr11	58170374	rs12280114	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,14:31:52:0.269:2	./.	0/1:32,17:32:49:0.347:2	0/1:29,11:32:40:0.275:2	0/1:1,44:32:45:0.978:2	./.	0/1:29,20:32:49:0.408:2	./.
chr11	58170469	rs11229412	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,39:31:72:0.542:2	./.	0/1:62,43:31:105:0.410:2	0/1:35,33:31:68:0.485:2	0/1:2,105:31:107:0.981:2	./.	0/1:38,33:31:71:0.465:2	./.
chr11	58170738	rs11229413	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,11:27:23:0.478:2	./.	0/1:13,20:29:33:0.606:2	0/1:9,8:30:17:0.471:2	0/1:2,39:30:41:0.951:2	./.	0/1:18,19:31:37:0.514:2	./.
chr11	58190112	rs10466659	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,34:33:72:0.479:2	./.	./.	0/1:31,31:32:62:0.500:2	0/1:33,34:32:68:0.507:2	./.	./.	./.
chr11	58190136	rs4298923	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,27:30:50:0.540:2	0/1:14,14:29:28:0.500:2	0/1:0,6:31:6:1.00:2	0/1:25,17:30:42:0.405:2	0/1:35,18:30:53:0.340:2	0/1:20,22:30:42:0.524:2	0/1:23,18:30:41:0.439:2	0/1:22,16:30:38:0.421:2	0/1:27,27:30:54:0.500:2	./.	./.
chr11	58190493	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:31:104:0.038:2	./.	./.
chr11	58207203	rs11229457	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,27:31:69:0.391:2	./.	./.	0/1:28,18:32:46:0.391:2	0/1:50,20:32:70:0.286:2	./.	./.	./.
chr11	58207204	rs4938895	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:31:76:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,84:30:84:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,56:31:56:1.00:2
chr11	58318619	rs1047979	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,11:30:27:0.407:2	0/1:11,12:30:23:0.522:2	./.	0/1:47,37:31:84:0.440:2	0/1:65,45:29:110:0.409:2	0/1:45,18:29:63:0.286:2	0/1:48,51:30:99:0.515:2	0/1:27,36:30:63:0.571:2	0/1:50,29:30:79:0.367:2	0/1:0,45:30:45:1.00:2	0/1:0,48:28:48:1.00:2
chr11	58338030	rs141909528	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,6:33:22:0.273:2	./.	./.	./.	./.
chr11	58378424	rs8373	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,10:33:19:0.526:2	./.	./.	0/1:2,4:32:6:0.667:2	0/1:6,7:33:13:0.538:2	./.	./.	./.
chr11	58478084	rs675815	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,93:32:93:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,16:33:16:1.00:2	0/1:1,89:32:90:0.989:2	0/1:0,94:32:94:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,116:33:116:1.00:2	0/1:1,105:33:106:0.991:2	0/1:0,111:33:111:1.00:2	0/1:0,99:32:99:1.00:2
chr11	58602309	rs11229651	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,14:30:24:0.583:2	./.	./.	./.	./.	./.	./.
chr11	58604806	rs76354468	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,82:30:166:0.494:2	./.	./.	./.	0/1:64,61:31:125:0.488:2	./.
chr11	58722687	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,7:33:167:0.042:2	./.	0/1:165,7:34:172:0.041:2	./.	./.	./.
chr11	58723198	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,4:31:63:0.065:2	./.	./.	./.	./.	./.	./.
chr11	58894253	rs1938589	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,3:33:8:0.375:2	./.	./.	./.	./.	./.
chr11	58919390	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,3:32:43:0.070:2	./.	./.	./.	./.	./.	./.	./.
chr11	58919813	rs10896928	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,21:31:36:0.583:2	./.	0/1:25,22:30:47:0.468:2	./.	./.	./.
chr11	58940278	rs12796683	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,33:31:78:0.423:2	./.	./.	./.
chr11	58949876	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,4:30:44:0.091:2	./.	./.	./.	./.	./.	./.	./.
chr11	58958577	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,8:30:36:0.222:2	./.	./.	./.
chr11	58978940	rs544864	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:10,9:31:19:0.474:2	0/1:5,5:32:10:0.500:2	0/1:3,3:31:6:0.500:2	./.	./.	0/1:16,12:28:28:0.429:2	0/1:18,17:30:35:0.486:2	0/1:15,9:30:24:0.375:2	0/1:15,12:32:27:0.444:2	./.	./.
chr11	58979247	rs192064519	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,67:32:148:0.453:2	./.	./.	./.
chr11	58979530	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:33:134:0.030:2	./.	./.
chr11	58979762	rs201984349	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:31:66:0.061:2	./.	./.	./.	./.
chr11	58979779	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,42:33:76:0.553:2	./.	./.	./.	./.	./.	./.	./.
chr11	59132798	rs7941190	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,33:33:33:1.00:2	0/1:0,21:33:21:1.00:2	./.	0/1:0,29:33:29:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,14:32:14:1.00:2	0/1:16,10:33:26:0.385:2	0/1:0,25:33:25:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,24:32:24:1.00:2	0/1:17,14:31:31:0.452:2
chr11	59189912	rs1453547	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:32:9:0.556:2	./.	0/1:44,17:32:61:0.279:2	./.	0/1:37,29:31:66:0.439:2	./.	./.	./.	0/1:38,26:32:64:0.406:2
chr11	59210761	rs11605572	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	0/1:29,19:28:48:0.396:2	./.	0/1:21,23:28:44:0.523:2	./.	./.	./.	0/1:34,26:30:60:0.433:2
chr11	59211188	rs6591536	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,124:29:124:1.00:2	0/1:0,69:31:69:1.00:2	0/1:12,12:30:24:0.500:2	0/1:3,116:30:119:0.975:2	0/1:75,68:29:143:0.476:2	0/1:0,128:30:128:1.00:2	0/1:68,60:29:129:0.469:2	0/1:4,146:30:150:0.973:2	0/1:0,113:30:113:1.00:2	0/1:0,115:30:115:1.00:2	0/1:59,71:29:130:0.546:2
chr11	59211265	rs7941591	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,118:29:119:0.992:2	0/1:0,54:30:54:1.00:2	0/1:10,6:31:16:0.375:2	0/1:0,136:30:136:1.00:2	0/1:60,49:29:109:0.450:2	0/1:2,121:30:123:0.984:2	0/1:80,65:28:145:0.448:2	0/1:2,137:29:139:0.986:2	0/1:2,117:31:119:0.983:2	0/1:0,110:30:110:1.00:2	0/1:54,88:29:142:0.620:2
chr11	59211292	rs147488926	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,65:31:148:0.439:2	0/1:28,25:31:53:0.472:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	59211421	rs17591107	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,20:32:42:0.476:2	./.	0/1:108,88:32:196:0.449:2	./.	0/1:106,84:32:190:0.442:2	./.	./.	./.	0/1:104,89:32:193:0.461:2
chr11	59224569	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:106,87:31:193:0.451:2	./.	./.	./.	./.	./.	./.	./.
chr11	59224608	rs1453544	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,10:32:17:0.588:2	./.	0/1:93,76:31:169:0.450:2	./.	0/1:76,75:32:151:0.497:2	./.	./.	./.	0/1:104,63:32:167:0.377:2
chr11	59224720	rs1453543	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,117:32:118:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,132:32:132:1.00:2	0/1:1,80:32:81:0.988:2	0/1:2,133:32:135:0.985:2	0/1:0,97:32:97:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,103:33:103:1.00:2	0/1:0,111:31:111:1.00:2	0/1:0,148:32:148:1.00:2
chr11	59224765	rs17500380	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,45:33:119:0.378:2	./.	./.	./.	./.	./.	./.	./.
chr11	59224885	rs1453542	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,10:32:21:0.476:2	./.	0/1:63,72:31:135:0.533:2	./.	0/1:70,51:33:121:0.421:2	./.	./.	./.	0/1:71,66:32:138:0.482:2
chr11	59225221	rs1453541	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:28:14:0.500:2	./.	0/1:79,52:27:131:0.397:2	./.	0/1:86,70:29:156:0.449:2	./.	./.	./.	0/1:54,72:28:126:0.571:2
chr11	59271637	rs7120079	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:47,30:33:77:0.390:2	0/1:96,87:33:183:0.475:2	./.	./.	0/1:126,70:33:197:0.357:2	./.	./.	0/1:118,74:33:192:0.385:2	0/1:111,80:33:191:0.419:2
chr11	59282861	rs17501584	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,15:28:39:0.385:2	./.	./.	./.	./.	./.	./.
chr11	59283120	rs368696851	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:188,5:32:193:0.026:2	./.	./.	0/1:153,4:33:157:0.025:2	./.	./.	./.
chr11	59376193	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,5:32:140:0.036:2	./.	./.
chr11	59480951	rs499033	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:31:38:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,25:30:25:1.00:2	0/1:21,13:27:34:0.382:2	0/1:0,30:29:30:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,28:30:28:1.00:2	0/1:14,23:30:37:0.622:2
chr11	59481077	rs201391534	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,5:33:98:0.051:2
chr11	59559579	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:32:161:0.025:2	./.	./.	./.
chr11	59599184	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:34:117:0.034:2	./.	./.
chr11	59603280	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:33:119:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	59623378	rs34324219	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,44:31:89:0.494:2	0/1:46,28:31:74:0.378:2
chr11	59623433	rs1042613	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,40:30:113:0.354:2	./.	./.	0/1:50,29:30:79:0.367:2	./.	./.	./.	./.
chr11	59631535	rs34528912	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:63,45:32:108:0.417:2	0/1:35,34:31:69:0.493:2	./.	./.	./.	./.	./.	0/1:59,52:32:112:0.468:2	./.	0/1:56,36:32:92:0.391:2	./.
chr11	59807976	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,3:28:14:0.214:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	59807978	rs79964989	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,27:33:64:0.422:2	0/1:26,25:32:51:0.490:2	./.	./.	./.	./.	./.	./.	0/1:59,48:33:107:0.449:2	./.	0/1:47,52:33:99:0.525:2
chr11	59831716	rs1151065	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,40:30:85:0.471:2	./.	0/1:58,40:30:98:0.408:2	./.	./.	0/1:80,49:31:129:0.380:2	0/1:69,48:30:117:0.410:2	0/1:70,54:31:124:0.435:2
chr11	59837097	rs528823	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,5:32:15:0.333:2	0/1:85,86:31:171:0.503:2	./.	0/1:94,76:31:170:0.447:2	./.	./.	0/1:93,89:32:182:0.489:2	0/1:89,72:32:161:0.447:2	0/1:90,70:31:160:0.438:2
chr11	59863104	rs569108	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:37:56:0.071:2	./.
chr11	59940500	rs138650483	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,18:31:37:0.486:2	0/1:13,14:32:27:0.519:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	59940599	rs7232	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:33:7:1.00:2	0/1:14,19:29:33:0.576:2	0/1:14,8:30:22:0.364:2	0/1:24,21:30:45:0.467:2	0/1:14,9:33:23:0.391:2	0/1:14,17:30:31:0.548:2	0/1:13,15:33:28:0.536:2	0/1:8,17:32:25:0.680:2	0/1:14,16:32:30:0.533:2
chr11	59945745	rs12453	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:31:9:1.00:2	0/1:53,54:33:107:0.505:2	./.	0/1:55,38:33:93:0.409:2	0/1:19,30:33:49:0.612:2	0/1:42,34:33:76:0.447:2	0/1:62,63:33:125:0.504:2	0/1:46,41:33:87:0.471:2	0/1:3,102:33:105:0.971:2
chr11	59949075	rs113133013	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:118,4:33:122:0.033:2	./.	./.	./.	./.	./.	./.
chr11	60059810	rs10750931	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,63:33:126:0.500:2	0/1:28,29:32:57:0.509:2	./.	./.	./.	./.	./.	./.	0/1:89,86:34:175:0.491:2	0/1:40,71:32:111:0.640:2	./.
chr11	60070176	rs6591561	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:68,57:32:125:0.456:2	0/1:65,33:32:98:0.337:2	./.	./.	./.	./.	0/1:52,58:32:110:0.527:2	./.	0/1:81,59:32:140:0.421:2	0/1:71,61:32:132:0.462:2	./.
chr11	60073597	rs4644658	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,182:33:182:1.00:2	0/1:0,133:32:133:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,191:33:191:1.00:2	0/1:2,186:32:188:0.989:2	0/1:0,184:32:185:1.00:2	0/1:1,187:32:188:0.995:2	0/1:0,187:33:187:1.00:2	0/1:0,173:34:173:1.00:2	0/1:0,182:33:182:1.00:2	0/1:0,179:33:179:1.00:2
chr11	60102384	rs2304935	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,58:32:129:0.450:2	0/1:53,29:32:82:0.354:2	0/1:14,17:31:31:0.548:2	0/1:88,77:33:165:0.467:2	0/1:0,131:32:131:1.00:2	0/1:76,66:33:142:0.465:2	0/1:70,55:32:125:0.440:2	0/1:120,74:32:194:0.381:2	./.	./.	./.
chr11	60102396	rs2304934	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:79,69:32:148:0.466:2	0/1:58,37:32:95:0.389:2	0/1:17,22:32:39:0.564:2	0/1:98,84:32:182:0.462:2	0/1:2,148:32:150:0.987:2	0/1:89,71:32:160:0.444:2	0/1:88,63:33:151:0.417:2	0/1:120,76:32:196:0.388:2	./.	./.	./.
chr11	60102462	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:32:118:0.034:2	./.	./.	./.	./.
chr11	60102507	rs2304933	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,49:32:100:0.490:2	0/1:37,31:32:68:0.456:2	0/1:7,5:31:12:0.417:2	0/1:48,19:31:67:0.284:2	0/1:0,34:31:34:1.00:2	0/1:50,34:31:84:0.405:2	0/1:36,18:31:55:0.333:2	0/1:42,29:30:71:0.408:2	./.	./.	./.
chr11	60105366	rs2289613	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,16:27:37:0.432:2	./.	./.	./.	./.
chr11	60152563	rs950803	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:76,64:33:140:0.457:2	0/1:62,46:32:108:0.426:2	0/1:0,27:32:27:1.00:2	0/1:80,96:32:176:0.545:2	0/1:63,53:32:116:0.457:2	0/1:0,167:32:167:1.00:2	0/1:64,57:32:121:0.471:2	0/1:115,80:32:195:0.410:2	0/1:98,76:33:174:0.437:2	0/1:88,84:33:172:0.488:2	0/1:100,84:33:184:0.457:2
chr11	60152584	rs950802	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,14:30:31:0.452:2	0/1:93,102:30:195:0.523:2	0/1:69,66:29:135:0.489:2	0/1:118,75:29:193:0.389:2	0/1:75,56:30:131:0.427:2	0/1:115,80:30:195:0.410:2	0/1:110,76:31:186:0.409:2	0/1:93,88:31:181:0.486:2	0/1:100,85:31:185:0.459:2
chr11	60182970	rs7131283	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,50:31:107:0.467:2	0/1:46,31:31:77:0.403:2	0/1:0,17:30:17:1.00:2	0/1:47,57:31:104:0.548:2	0/1:41,45:30:86:0.523:2	0/1:1,99:30:100:0.990:2	0/1:0,60:31:60:1.00:2	0/1:52,48:30:100:0.480:2	0/1:71,55:31:126:0.437:2	0/1:53,43:31:96:0.448:2	0/1:0,149:32:149:1.00:2
chr11	60183189	rs117801657	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,26:31:51:0.510:2	./.	./.	./.
chr11	60184191	rs3825020	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,17:32:36:0.472:2	0/1:13,12:30:25:0.480:2	./.	0/1:22,19:31:41:0.463:2	0/1:16,7:31:23:0.304:2	0/1:0,32:31:32:1.00:2	0/1:23,13:31:36:0.361:2	0/1:25,16:32:41:0.390:2	0/1:28,19:31:47:0.404:2	0/1:30,9:31:39:0.231:2	0/1:0,41:33:41:1.00:2
chr11	60184319	rs147367847	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,16:32:38:0.421:2	./.	./.	./.	./.	./.
chr11	60184467	rs151183005	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,14:31:29:0.483:2	./.	./.	./.	./.	./.	./.	./.
chr11	60197299	rs34169848	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,6:32:15:0.400:2	0/1:7,3:30:10:0.300:2	./.	./.
chr11	60198328	rs708229	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,5:33:9:0.556:2	0/1:40,44:33:84:0.524:2	0/1:26,12:32:38:0.316:2	0/1:49,22:31:71:0.310:2	0/1:28,19:31:47:0.404:2	0/1:63,20:32:83:0.241:2	0/1:36,54:32:90:0.600:2	0/1:31,49:33:80:0.613:2	0/1:71,75:33:146:0.514:2
chr11	60230531	rs2070770	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,24:31:44:0.545:2	./.	./.	./.	./.
chr11	60264947	rs2298552	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:34,44:32:78:0.564:2	0/1:19,19:31:38:0.500:2	0/1:3,7:32:10:0.700:2	./.	./.	0/1:42,27:32:69:0.391:2	0/1:34,38:32:72:0.528:2	0/1:39,44:31:83:0.530:2	0/1:57,32:33:89:0.360:2	./.	0/1:40,53:32:93:0.570:2
chr11	60265002	rs2298553	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,24:31:45:0.533:2	0/1:17,10:31:27:0.370:2	./.	./.	./.	0/1:34,32:30:66:0.485:2	./.	0/1:28,28:31:56:0.500:2	0/1:34,25:33:59:0.424:2	./.	0/1:38,28:32:66:0.424:2
chr11	60285564	rs55756397	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,26:32:79:0.329:2	./.
chr11	60285575	rs10736706	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:30:69:1.00:2	0/1:0,46:29:46:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,54:29:54:1.00:2	0/1:0,83:30:83:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,67:30:67:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,82:29:82:1.00:2	0/1:1,109:30:110:0.991:2
chr11	60291413	rs6591595	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:33:26:1.00:2	0/1:0,37:33:37:1.00:2	0/1:0,10:32:10:1.00:2	0/1:1,40:33:41:0.976:2	0/1:0,23:32:23:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,19:33:19:1.00:2	0/1:32,16:32:48:0.333:2	0/1:0,40:34:40:1.00:2	0/1:0,30:33:30:1.00:2	0/1:28,20:33:48:0.417:2
chr11	60296834	rs12802514	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,53:33:94:0.564:2	./.	./.	./.	./.	./.	./.	./.
chr11	60296879	rs11230364	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,55:32:99:0.556:2	./.	./.	0/1:47,51:32:98:0.520:2
chr11	60531264	rs12363342	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,27:31:62:0.435:2	0/1:0,37:30:37:1.00:2	./.	0/1:1,54:30:55:0.982:2	./.	./.	0/1:19,6:30:25:0.240:2	./.
chr11	60531346	rs1032939	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,23:30:23:1.00:2	0/1:0,12:29:12:1.00:2	./.	0/1:19,20:29:39:0.513:2	./.	0/1:0,36:29:36:1.00:2	./.	./.	0/1:16,16:31:32:0.500:2	0/1:14,7:29:21:0.333:2	0/1:0,33:29:33:1.00:2
chr11	60559805	rs931861	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,45:29:98:0.459:2	0/1:35,26:28:61:0.426:2	0/1:5,7:32:12:0.583:2	0/1:0,115:30:115:1.00:2	0/1:0,67:29:67:1.00:2	0/1:0,107:30:107:1.00:2	0/1:0,84:29:84:1.00:2	0/1:0,104:29:104:1.00:2	0/1:60,75:31:135:0.556:2	0/1:1,68:29:69:0.986:2	0/1:0,108:30:108:1.00:2
chr11	60565921	rs12419635	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,9:30:25:0.360:2	0/1:4,13:31:17:0.765:2	./.	./.	./.	./.	./.	./.	0/1:28,35:33:63:0.556:2	./.	./.
chr11	60609972	rs2074422	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,59:30:104:0.567:2	0/1:55,60:30:115:0.522:2	./.	./.	./.	0/1:60,51:31:111:0.459:2	0/1:49,39:30:90:0.443:2	./.
chr11	60610065	rs141728952	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:11,10:31:21:0.476:2	0/1:8,7:33:15:0.467:2	./.	./.	./.	./.	./.	./.	./.	0/1:11,9:32:20:0.450:2	0/1:20,16:32:36:0.444:2
chr11	60620585	rs2467642	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,3:28:3:1.00:2	./.	./.	0/1:0,4:26:4:1.00:2	0/1:0,4:20:4:1.00:2	./.	0/1:0,2:30:2:1.00:2	0/1:0,7:26:7:1.00:2	./.	./.	0/1:0,6:28:6:1.00:2
chr11	60620590	rs2428461	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,5:32:5:1.00:2	./.	./.	0/1:0,4:31:4:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,3:33:3:1.00:2	0/1:0,3:34:3:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,2:32:2:1.00:2	./.	0/1:0,8:31:8:1.00:2
chr11	60620692	rs41352145	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,9:30:25:0.360:2	./.	./.	./.
chr11	60635091	rs550479	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,116:29:116:1.00:2	0/1:0,72:29:72:1.00:2	0/1:0,19:29:19:1.00:2	0/1:0,131:28:131:1.00:2	0/1:0,96:28:96:1.00:2	0/1:0,135:28:135:1.00:2	0/1:1,96:28:97:0.990:2	0/1:0,113:29:113:1.00:2	0/1:0,120:29:120:1.00:2	0/1:1,82:29:83:0.988:2	0/1:0,50:28:50:1.00:2
chr11	60635226	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:149,4:33:153:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr11	60637164	rs489172	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,34:31:79:0.430:2	0/1:25,20:31:45:0.444:2	0/1:0,12:30:12:1.00:2	0/1:0,91:31:92:1.00:2	0/1:2,97:30:99:0.980:2	0/1:48,56:30:104:0.538:2	0/1:62,42:31:104:0.404:2	0/1:0,122:30:122:1.00:2	0/1:0,94:31:94:1.00:2	0/1:45,45:31:90:0.500:2	0/1:0,75:30:75:1.00:2
chr11	60637920	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,10:30:66:0.152:2	./.
chr11	60638461	rs10897122	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,48:32:95:0.505:2	0/1:29,21:32:50:0.420:2	./.	./.	./.	0/1:62,59:32:121:0.488:2	0/1:107,72:32:179:0.402:2	./.	./.	0/1:49,39:31:88:0.443:2	0/1:40,34:32:74:0.459:2
chr11	60638470	rs566411	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:32:95:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,125:32:125:1.00:2	0/1:1,121:32:122:0.992:2	0/1:0,175:33:175:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,93:33:93:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,71:32:71:1.00:2
chr11	60666086	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:31:80:0.050:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	60666341	rs3763840	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,49:33:98:0.500:2	0/1:31,22:32:53:0.415:2	0/1:13,8:32:21:0.381:2	0/1:63,42:32:105:0.400:2	./.	./.	./.	./.	0/1:58,52:33:110:0.473:2	0/1:42,41:33:83:0.494:2	./.
chr11	60673868	rs17155470	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:7,6:30:13:0.462:2	./.	./.	0/1:5,11:29:16:0.688:2	./.	./.	./.	./.	0/1:6,5:29:11:0.455:2	0/1:2,3:29:5:0.600:2	./.
chr11	60689445	rs555835	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,30:27:30:1.00:2	0/1:0,25:28:25:1.00:2	./.	0/1:24,31:28:55:0.564:2	./.	0/1:42,24:26:66:0.364:2	0/1:22,13:27:35:0.371:2	./.	0/1:12,21:27:33:0.636:2	0/1:0,40:26:40:1.00:2	0/1:29,23:26:52:0.442:2
chr11	60695301	rs575123	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,24:31:24:1.00:2	0/1:0,20:33:21:1.00:2	./.	0/1:0,28:30:28:1.00:2	./.	0/1:22,17:31:39:0.436:2	0/1:6,21:31:27:0.778:2	./.	0/1:17,18:32:35:0.514:2	0/1:0,37:29:37:1.00:2	0/1:15,18:31:33:0.545:2
chr11	60696342	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,32:32:74:0.432:2	./.	./.	./.
chr11	60696399	rs61751216	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,19:32:40:0.475:2
chr11	60698054	rs2074416	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:10,9:31:19:0.474:2	0/1:5,6:31:11:0.545:2	./.	0/1:11,8:26:19:0.421:2	./.	./.	./.	./.	0/1:10,21:31:31:0.677:2	0/1:10,16:30:26:0.615:2	./.
chr11	60699580	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:32:74:0.054:2	./.
chr11	60701032	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:32:35:0.114:2	./.
chr11	60701136	rs9513	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	0/1:3,4:28:7:0.571:2	./.	./.
chr11	60703403	rs524523	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,64:29:123:0.525:2	./.	./.	./.	./.	./.	./.	./.
chr11	60703423	rs77148561	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,73:30:152:0.480:2	./.	./.	./.	./.	./.	./.
chr11	60703777	rs55920775	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,42:31:84:0.500:2	0/1:26,21:32:47:0.447:2	./.	./.	./.	0/1:56,60:30:116:0.517:2	0/1:78,68:31:146:0.466:2	./.	./.	0/1:38,45:31:83:0.542:2	0/1:42,58:32:100:0.580:2
chr11	60703882	rs61755079	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,77:31:178:0.433:2	./.	./.	./.	./.	./.	./.	./.
chr11	60703903	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,5:30:154:0.032:2	./.	./.
chr11	60704213	rs2469887	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:13,12:32:25:0.480:2	0/1:6,9:29:15:0.600:2	./.	0/1:0,36:30:36:1.00:2	./.	./.	./.	./.	0/1:12,21:31:33:0.636:2	0/1:10,14:30:24:0.583:2	./.
chr11	60705454	rs2905692	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:30:52:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,84:30:84:1.00:2	0/1:0,79:30:79:1.00:2	0/1:0,102:30:102:1.00:2	0/1:0,93:30:93:1.00:2	0/1:0,104:30:104:1.00:2	0/1:0,76:31:76:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,61:30:61:1.00:2
chr11	60709520	rs78193365	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,30:31:71:0.423:2	./.	./.	./.	./.	./.	./.
chr11	60709554	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,62:31:128:0.484:2	./.	./.	./.	./.	./.
chr11	60718792	rs150370599	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	./.	./.	./.	./.	./.
chr11	60776103	rs61899223	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,6:31:12:0.500:2	./.	0/1:1,6:32:7:0.857:2	0/1:31,23:32:54:0.426:2	./.	./.	0/1:28,4:32:32:0.125:2	./.	0/1:19,11:34:30:0.367:2	./.	./.
chr11	60776186	rs11230562	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:30:14:0.500:2	0/1:3,7:31:10:0.700:2	./.	./.	./.	0/1:10,6:31:16:0.375:2	./.	0/1:2,10:30:12:0.833:2	./.	./.	./.
chr11	60776209	rs11230563	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,13:32:25:0.520:2	0/1:10,4:32:14:0.286:2	0/1:0,3:32:3:1.00:2	0/1:1,36:32:37:0.973:2	0/1:0,19:30:19:1.00:2	./.	0/1:2,10:31:12:0.833:2	./.	0/1:12,14:32:26:0.538:2	./.	0/1:0,22:32:22:1.00:2
chr11	60776270	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:31:67:0.060:2	./.	./.	./.	./.	./.
chr11	60776306	rs2074225	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:30:26:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,6:31:6:1.00:2	0/1:1,40:31:43:0.976:2	0/1:0,40:31:40:1.00:2	0/1:24,24:30:48:0.500:2	0/1:5,6:31:11:0.545:2	0/1:18,25:31:43:0.581:2	0/1:0,43:31:43:1.00:2	./.	0/1:0,24:30:24:1.00:2
chr11	60776307	rs79848107	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:7,19:26:26:0.731:2	0/1:6,7:29:13:0.538:2	./.	0/1:21,22:29:43:0.512:2	./.	./.	0/1:6,5:28:11:0.455:2	./.	0/1:29,14:30:43:0.326:2	./.	./.
chr11	60777073	rs12360861	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,14:31:37:0.378:2	0/1:0,38:30:38:1.00:2	./.	./.	./.	./.	./.	0/1:0,31:31:31:1.00:2
chr11	60781419	rs148791898	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,7:31:24:0.292:2	./.
chr11	60785263	rs61755080	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,30:33:72:0.417:2	./.	./.	./.
chr11	60785352	rs1050922	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:30:34:1.00:2	0/1:0,24:29:24:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,44:30:44:1.00:2	0/1:1,41:30:42:0.976:2	0/1:35,24:31:59:0.407:2	0/1:21,21:30:42:0.500:2	0/1:0,64:30:64:1.00:2	0/1:25,22:31:47:0.468:2	./.	0/1:1,44:29:45:0.978:2
chr11	60785463	rs12417503	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:29:13:0.462:2	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.
chr11	60785464	rs2074233	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:3,5:32:8:0.625:2	0/1:5,7:32:12:0.583:2	./.	./.	./.	./.	./.	0/1:4,4:32:8:0.500:2	./.	./.	./.
chr11	60886913	rs2241002	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,34:28:34:1.00:2	0/1:0,15:31:15:1.00:2	./.	./.	./.	0/1:25,36:28:61:0.590:2	./.	./.	./.	./.	./.
chr11	60889246	rs34821010	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,8:31:16:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	60891421	rs12364279	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,14:32:25:0.560:2	./.	0/1:4,11:28:15:0.733:2	./.	./.	0/1:5,3:33:8:0.375:2	0/1:11,9:33:20:0.450:2
chr11	60892606	rs637186	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:31:56:1.00:2	0/1:0,45:29:45:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,83:30:83:1.00:2	0/1:0,84:31:84:1.00:2	0/1:0,78:31:78:1.00:2	0/1:1,84:32:85:0.988:2	0/1:0,56:31:56:1.00:2	0/1:0,67:31:67:1.00:2
chr11	60893235	rs2229177	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,18:30:30:0.600:2	0/1:11,4:31:15:0.267:2	0/1:3,7:30:10:0.700:2	0/1:22,21:30:43:0.488:2	./.	0/1:22,12:29:34:0.353:2	0/1:26,31:30:57:0.544:2	0/1:32,25:29:57:0.439:2	./.	0/1:15,16:31:31:0.516:2	./.
chr11	60899767	rs754382	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:33:36:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,60:32:60:1.00:2	0/1:36,41:31:77:0.532:2	0/1:46,26:32:72:0.361:2	0/1:0,46:32:46:1.00:2	0/1:40,42:32:82:0.512:2	./.	0/1:0,48:32:48:1.00:2	0/1:20,22:32:42:0.524:2
chr11	60906279	rs80029472	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:24,15:31:39:0.385:2	0/1:9,3:32:12:0.250:2	./.	./.	./.	./.	0/1:38,16:31:54:0.296:2	./.	./.	0/1:20,25:32:45:0.556:2	./.
chr11	60971027	rs373139279	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,15:32:68:0.221:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	60971069	rs1610547	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:153,23:31:177:0.131:2	0/1:160,18:30:178:0.101:2	0/1:28,17:30:46:0.378:2	0/1:6,137:28:143:0.958:2	0/1:134,53:28:190:0.283:2	0/1:129,62:29:191:0.325:2	0/1:172,18:31:191:0.095:2	0/1:135,53:28:189:0.282:2	0/1:3,136:29:139:0.978:2	0/1:168,16:32:185:0.087:2	0/1:158,20:32:180:0.112:2
chr11	60974032	rs202019324	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:106,50:33:156:0.321:2	0/1:71,32:33:103:0.311:2	0/1:10,3:32:13:0.231:2	./.	0/1:160,32:33:192:0.167:2	0/1:162,27:32:189:0.143:2	0/1:137,48:33:186:0.259:2	0/1:158,38:33:196:0.194:2	./.	0/1:152,36:33:188:0.191:2	0/1:134,53:33:187:0.283:2
chr11	60974036	.	G	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:107,47:33:155:0.305:2	0/1:70,31:32:101:0.307:2	0/1:10,3:30:13:0.231:2	./.	0/1:156,33:34:189:0.175:2	0/1:155,25:33:180:0.139:2	0/1:144,50:33:194:0.258:2	0/1:154,31:33:185:0.168:2	./.	0/1:151,36:33:187:0.193:2	0/1:138,50:32:188:0.266:2
chr11	60975897	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,10:33:40:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	60977398	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,9:33:194:0.046:2	./.	./.	./.	./.
chr11	60978581	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,3:31:17:0.176:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	60980141	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,4:30:23:0.174:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	60989863	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,7:32:48:0.146:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	60990558	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,38:31:154:0.247:2
chr11	60992861	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:114,52:32:166:0.313:2	0/1:77,28:32:105:0.267:2	0/1:9,17:33:26:0.654:2	./.	0/1:159,39:33:198:0.197:2	0/1:167,28:32:195:0.144:2	0/1:151,45:33:196:0.230:2	0/1:169,29:34:198:0.146:2	./.	0/1:138,41:33:179:0.229:2	0/1:128,59:33:189:0.316:2
chr11	60992865	.	G	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:120,53:32:173:0.306:2	0/1:76,26:32:102:0.255:2	0/1:9,17:34:26:0.654:2	./.	0/1:158,38:33:196:0.194:2	0/1:163,28:33:191:0.147:2	0/1:151,43:34:194:0.222:2	0/1:170,28:34:198:0.141:2	./.	0/1:147,40:33:187:0.214:2	0/1:125,60:32:185:0.324:2
chr11	60994726	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,7:32:27:0.259:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	60996227	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,9:34:193:0.047:2	./.	./.	./.	./.
chr11	60998970	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,8:31:32:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	61008689	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,12:32:40:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	61009384	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,39:32:140:0.279:2
chr11	61011687	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:108,42:32:150:0.280:2	0/1:85,22:32:107:0.206:2	0/1:8,15:32:23:0.652:2	./.	0/1:168,22:31:190:0.116:2	0/1:165,18:31:183:0.098:2	0/1:150,40:33:190:0.211:2	0/1:150,41:33:191:0.215:2	./.	0/1:149,37:33:186:0.199:2	0/1:140,51:32:191:0.267:2
chr11	61011691	.	G	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:110,38:32:148:0.257:2	0/1:86,22:32:108:0.204:2	0/1:8,14:32:22:0.636:2	./.	0/1:171,21:32:192:0.109:2	0/1:160,20:32:180:0.111:2	0/1:153,40:33:193:0.207:2	0/1:149,46:32:195:0.236:2	./.	0/1:146,38:34:184:0.207:2	0/1:138,51:32:189:0.270:2
chr11	61013552	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,10:33:24:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	61017171	rs111973782	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,11:29:21:0.524:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	61018642	rs12280940	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,20:29:39:0.513:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	61032619	rs61746696	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:29:10:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	61042059	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,3:32:41:0.073:2	./.
chr11	61099072	rs2230356	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,64:32:118:0.542:2	./.	./.	0/1:1,94:33:95:0.989:2
chr11	61106892	rs2513329	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:29:38:1.00:2	0/1:0,21:28:21:1.00:2	0/1:10,6:32:16:0.375:2	0/1:0,49:28:49:1.00:2	0/1:0,45:27:45:1.00:2	0/1:0,70:29:70:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,71:29:71:1.00:2	0/1:0,40:29:40:1.00:2	0/1:0,44:29:44:1.00:2	0/1:0,36:29:36:1.00:2
chr11	61108974	rs2260655	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:29:56:1.00:2	0/1:2,29:31:31:0.935:2	0/1:0,5:30:5:1.00:2	0/1:0,73:31:74:1.00:2	0/1:0,75:30:75:1.00:2	0/1:1,84:30:85:0.988:2	0/1:1,106:31:107:0.991:2	0/1:0,94:30:94:1.00:2	0/1:0,64:31:64:1.00:2	0/1:1,62:31:63:0.984:2	0/1:0,51:31:51:1.00:2
chr11	61111346	rs35723406	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,16:31:16:1.00:2	0/1:0,10:33:10:1.00:2	./.	./.	0/1:17,24:31:41:0.585:2	./.	./.	./.	./.	./.	./.
chr11	61112802	rs2305465	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:31:56:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,83:31:83:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,69:30:69:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,112:30:113:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,83:31:83:1.00:2	0/1:0,79:31:79:1.00:2
chr11	61165280	rs3741265	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,14:31:21:0.667:2	0/1:1,128:31:129:0.992:2	0/1:96,73:31:169:0.432:2	0/1:0,179:31:180:1.00:2	0/1:1,185:31:186:0.995:2	0/1:0,174:31:174:1.00:2	0/1:0,126:32:126:1.00:2	0/1:0,73:32:73:1.00:2	0/1:2,113:32:115:0.983:2
chr11	61165741	rs10897158	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,106:29:106:1.00:2	0/1:43,46:28:89:0.517:2	0/1:2,95:28:97:0.979:2	0/1:1,73:29:74:0.986:2	0/1:2,103:29:105:0.981:2	0/1:0,111:29:111:1.00:2	0/1:2,85:29:87:0.977:2	0/1:1,117:28:118:0.992:2
chr11	61179285	rs3019198	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,94:32:94:1.00:2	0/1:66,59:32:125:0.472:2	0/1:1,105:31:106:0.991:2	0/1:0,98:31:98:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,85:33:85:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,78:32:78:1.00:2
chr11	61249383	rs3019200	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,35:32:35:1.00:2	0/1:18,5:31:23:0.217:2	0/1:0,40:32:40:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,47:33:47:1.00:2
chr11	61253866	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:33:114:0.035:2	./.	./.
chr11	61291922	rs10897167	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,33:31:83:0.398:2	./.
chr11	61487690	rs198430	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,29:31:81:0.358:2	./.	./.	0/1:32,34:32:66:0.515:2	./.	0/1:37,15:33:52:0.288:2	./.
chr11	61505168	rs198444	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:28,40:30:68:0.588:2	0/1:22,14:32:36:0.389:2	0/1:9,13:30:22:0.591:2	./.	0/1:0,117:31:117:1.00:2	./.	./.	0/1:76,68:31:144:0.472:2	0/1:72,55:32:127:0.433:2	0/1:52,28:32:80:0.350:2	0/1:36,45:31:81:0.556:2
chr11	61511646	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:33:113:0.035:2	./.	./.	./.	./.
chr11	61536728	rs376809163	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,25:31:42:0.595:2
chr11	61539020	rs149803	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:11,20:28:31:0.645:2	0/1:10,5:30:15:0.333:2	./.	0/1:0,38:29:38:1.00:2	./.	0/1:0,29:29:29:1.00:2	./.	0/1:24,23:28:47:0.489:2	0/1:17,16:28:33:0.485:2	0/1:13,20:28:35:0.606:2	0/1:30,15:28:45:0.333:2
chr11	61547731	rs150031578	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:33:122:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	61548192	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:33:73:0.055:2	./.
chr11	61551356	rs174535	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,87:33:189:0.460:2	./.	0/1:81,62:33:143:0.434:2	0/1:73,59:33:132:0.447:2	./.	0/1:45,32:33:78:0.416:2	./.
chr11	61564299	rs4246215	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,39:29:81:0.481:2	./.	0/1:40,30:30:70:0.429:2	0/1:71,45:29:116:0.388:2	./.	0/1:39,57:30:97:0.594:2	./.
chr11	61582708	rs174561	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	0/1:4,3:31:7:0.429:2	0/1:5,3:31:8:0.375:2	./.	0/1:0,2:31:2:1.00:2	./.
chr11	61633140	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	61633182	rs482548	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,13:31:28:0.464:2	./.	./.	0/1:17,12:32:29:0.414:2	./.	./.	./.
chr11	61658800	rs174465	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.
chr11	61672235	rs174473	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,45:30:153:0.294:2	./.	./.	0/1:76,54:30:130:0.415:2	./.	./.	0/1:36,40:29:76:0.526:2
chr11	61672265	rs174474	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,55:32:184:0.299:2	./.	./.	0/1:100,76:32:176:0.432:2	./.	./.	0/1:43,48:32:91:0.527:2
chr11	61674118	rs174476	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,51:30:51:1.00:2	0/1:0,44:31:45:1.00:2	./.	0/1:1,67:30:70:0.985:2	./.	0/1:0,80:30:80:1.00:2	0/1:68,59:30:129:0.465:2	./.	0/1:52,33:31:85:0.388:2	0/1:33,27:31:60:0.450:2	0/1:26,25:30:52:0.490:2
chr11	61675644	rs174477	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,7:29:18:0.389:2	./.	./.	./.
chr11	61719387	rs1800007	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,40:31:71:0.563:2	0/1:0,55:32:55:1.00:2	0/1:56,3:33:59:0.051:2	0/1:0,66:32:66:1.00:2	0/1:24,29:32:53:0.547:2	./.
chr11	61722645	rs1109748	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:141,6:31:147:0.041:2	./.	0/1:89,60:30:149:0.403:2	./.	./.	./.	./.
chr11	61730036	rs149698	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:25,22:27:48:0.468:2	0/1:12,24:30:36:0.667:2	./.	0/1:2,63:30:65:0.969:2	./.	0/1:0,76:30:78:1.00:2	./.	./.	0/1:45,43:30:88:0.489:2	./.	0/1:54,50:29:104:0.481:2
chr11	61730183	rs1800008	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,10:29:27:0.370:2	./.	./.	0/1:18,22:31:40:0.550:2
chr11	61730234	rs1800009	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,13:31:40:0.325:2	0/1:13,21:31:34:0.618:2	./.	./.	0/1:24,20:29:44:0.455:2
chr11	61730553	rs17185413	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,40:32:97:0.412:2	./.	./.	0/1:59,44:31:103:0.427:2
chr11	61731534	rs195155	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:29:77:1.00:2	0/1:0,46:29:46:1.00:2	0/1:0,6:27:6:1.00:2	0/1:0,69:28:69:1.00:2	0/1:0,79:28:80:1.00:2	0/1:0,88:28:88:1.00:2	0/1:0,69:29:71:1.00:2	0/1:0,89:28:89:1.00:2	0/1:1,121:30:123:0.992:2	0/1:1,75:29:76:0.987:2	0/1:0,73:28:73:1.00:2
chr11	61895741	rs1675131	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,29:32:30:0.967:2	0/1:0,21:31:21:1.00:2	0/1:0,7:31:7:1.00:2	0/1:1,46:32:47:0.979:2	0/1:30,17:29:47:0.362:2	0/1:24,18:30:42:0.429:2	0/1:45,17:28:62:0.274:2	0/1:0,59:31:59:1.00:2	0/1:32,9:33:41:0.220:2	0/1:0,41:31:41:1.00:2	0/1:0,45:32:45:1.00:2
chr11	61897359	rs1675133	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:31:35:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,7:31:7:1.00:2	0/1:2,36:30:38:0.947:2	0/1:12,16:29:28:0.571:2	0/1:23,45:30:68:0.662:2	0/1:8,9:27:17:0.529:2	0/1:0,27:29:27:1.00:2	0/1:17,22:30:39:0.564:2	0/1:0,27:29:27:1.00:2	0/1:0,26:29:26:1.00:2
chr11	61897760	rs145887063	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,6:31:15:0.400:2	./.	./.	./.	./.
chr11	61906374	rs1675126	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:29:35:1.00:2	0/1:0,21:29:21:1.00:2	0/1:0,5:27:5:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,44:29:44:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,51:29:51:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,36:29:36:1.00:2
chr11	61908440	rs2277283	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,12:30:19:0.632:2	./.	./.	0/1:50,73:28:123:0.593:2	./.	0/1:87,65:29:152:0.428:2	0/1:70,44:30:114:0.386:2	0/1:78,47:29:125:0.376:2	./.
chr11	61908973	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:31:92:0.043:2	./.
chr11	61913196	rs7129085	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:31:58:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,122:31:122:1.00:2	0/1:83,49:31:132:0.371:2	0/1:62,60:30:122:0.492:2	0/1:48,61:31:109:0.560:2	0/1:1,132:31:133:0.992:2	0/1:61,52:32:113:0.460:2	0/1:1,83:31:84:0.988:2	0/1:2,61:31:63:0.968:2
chr11	61914369	rs35595038	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,4:28:4:1.00:2	./.	./.	./.	./.	./.	./.
chr11	61919292	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:34:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	62010863	rs2232950	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,53:32:126:0.424:2	0/1:96,90:32:186:0.484:2	0/1:94,64:33:158:0.405:2	./.	./.	0/1:78,74:33:152:0.487:2	0/1:92,91:32:183:0.497:2
chr11	62010929	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,4:32:133:0.030:2	./.	./.	./.	./.	./.	./.
chr11	62038538	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,31:32:74:0.419:2
chr11	62063869	rs56196602	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,10:31:21:0.476:2	./.	./.	./.	./.	./.
chr11	62066478	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,4:33:116:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr11	62284468	rs11555629	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:37,44:28:81:0.543:2	0/1:32,17:28:49:0.347:2	./.	./.	0/1:45,53:28:98:0.541:2	./.	./.	./.	./.	./.	./.
chr11	62284888	rs11555628	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,31:32:85:0.365:2	./.	0/1:49,33:31:82:0.402:2	./.	./.	./.	0/1:34,34:32:68:0.500:2	./.
chr11	62285441	rs61312994	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:40,17:33:57:0.298:2	0/1:16,14:32:30:0.467:2	./.	./.	0/1:22,22:33:46:0.500:2	./.	./.	./.	./.	./.	./.
chr11	62285596	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,19:31:46:0.413:2	./.
chr11	62285665	rs61625484	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:32,29:29:61:0.475:2	0/1:19,17:30:36:0.472:2	./.	./.	0/1:40,21:27:61:0.344:2	./.	./.	./.	./.	./.	./.
chr11	62286836	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:32:138:0.029:2
chr11	62287758	rs144063659	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,31:31:58:0.534:2	./.	./.	./.	./.
chr11	62287828	rs12292433	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:54,41:33:95:0.432:2	0/1:39,23:32:62:0.371:2	./.	./.	0/1:41,33:32:74:0.446:2	./.	./.	./.	./.	./.	./.
chr11	62289111	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:131,4:32:135:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr11	62289184	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,5:27:109:0.046:2	./.	./.	./.	./.	./.
chr11	62289202	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:31:119:0.034:2	./.	./.	./.	./.	./.
chr11	62289235	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,5:31:110:0.045:2	./.	./.	./.	./.	./.
chr11	62289925	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:31:119:0.034:2	./.	./.	./.
chr11	62290279	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:32:166:0.024:2	./.	./.	./.	./.	./.
chr11	62290294	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:31:153:0.026:2	./.	./.	./.	./.	./.
chr11	62290719	rs11231128	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:23,22:32:45:0.489:2	0/1:13,15:31:28:0.536:2	./.	./.	0/1:16,7:32:23:0.304:2	./.	./.	./.	./.	./.	./.
chr11	62291953	rs61895404	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,33:32:79:0.418:2	./.	./.	./.	./.
chr11	62292882	rs566144	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:32:75:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,104:31:104:1.00:2	0/1:1,61:31:62:0.984:2	0/1:0,76:31:76:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,97:31:97:1.00:2
chr11	62292999	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:34:144:0.028:2	./.	./.	./.	./.
chr11	62293786	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:31:193:0.026:2	./.	./.	./.	./.	./.
chr11	62293822	rs12366127	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,83:31:84:0.988:2	./.	./.	./.	./.
chr11	62293925	rs149615783	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,54:31:119:0.454:2	./.	./.
chr11	62293948	rs486903	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,37:30:85:0.435:2	0/1:28,26:31:54:0.481:2	0/1:0,6:30:6:1.00:2	0/1:58,40:30:98:0.408:2	0/1:32,14:29:46:0.304:2	0/1:35,39:30:74:0.527:2	./.	0/1:1,76:30:77:0.987:2	0/1:0,88:31:88:1.00:2	0/1:38,42:30:80:0.525:2	0/1:36,38:30:74:0.514:2
chr11	62294309	rs141117375	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,37:31:92:0.402:2
chr11	62294517	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,3:37:115:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr11	62295361	rs145871196	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:40,32:31:72:0.444:2	0/1:28,22:31:50:0.440:2	./.	./.	0/1:29,23:30:52:0.442:2	./.	./.	./.	./.	./.	./.
chr11	62295474	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr11	62295933	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:32:123:0.033:2	./.	./.	./.
chr11	62296030	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:103,5:31:108:0.046:2	0/1:50,4:31:54:0.074:2	./.	./.	./.	./.	0/1:120,4:32:124:0.032:2	./.	./.	./.	0/1:118,5:32:123:0.041:2
chr11	62296060	rs601430	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:114,4:32:118:0.034:2	./.	./.	./.	./.	./.	./.
chr11	62296070	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,6:33:89:0.068:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	62296098	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,4:32:74:0.054:2	./.	./.	./.	./.	./.	./.	./.	0/1:81,5:32:87:0.058:2	./.	./.
chr11	62296231	rs201187864	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,5:30:82:0.061:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	62296271	rs145366859	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,3:32:44:0.068:2	./.	./.	0/1:73,4:31:77:0.052:2	./.	./.	./.	./.	./.	./.
chr11	62296450	rs201325865	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,46:32:90:0.517:2	./.	./.
chr11	62296535	rs77055528	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:41,30:32:71:0.423:2	0/1:28,12:32:40:0.300:2	./.	./.	0/1:31,23:31:54:0.426:2	./.	./.	./.	./.	./.	./.
chr11	62296601	rs74853209	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:33,38:33:71:0.535:2	0/1:25,22:32:47:0.468:2	./.	./.	0/1:40,36:31:76:0.474:2	./.	./.	./.	./.	./.	./.
chr11	62297162	rs75855515	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:11,9:33:20:0.450:2	0/1:6,3:31:9:0.333:2	./.	./.	0/1:12,10:32:22:0.455:2	./.	./.	./.	./.	./.	./.
chr11	62297447	rs75436331	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:66,58:33:124:0.468:2	0/1:33,17:33:50:0.340:2	./.	./.	0/1:52,39:31:91:0.429:2	./.	./.	./.	./.	./.	./.
chr11	62298068	rs115627503	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,46:29:106:0.434:2
chr11	62298191	rs201951116	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,81:32:161:0.503:2	./.	./.	./.	./.
chr11	62298240	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:150,4:32:154:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr11	62298315	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,5:32:90:0.056:2	./.	./.	./.	./.	./.	./.	./.
chr11	62299945	rs11231130	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:28,29:32:57:0.509:2	0/1:15,23:32:38:0.605:2	./.	./.	0/1:37,27:32:64:0.422:2	./.	./.	./.	./.	./.	./.
chr11	62301521	rs186340112	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,76:31:142:0.535:2	./.	./.	./.
chr11	62334908	rs1061093	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,21:33:48:0.438:2	0/1:25,27:31:52:0.519:2	0/1:19,18:32:37:0.486:2	./.	0/1:1,63:32:64:0.984:2	0/1:32,13:32:45:0.289:2	0/1:24,18:32:42:0.429:2	./.
chr11	62340095	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:32:166:0.024:2	./.	./.
chr11	62346131	rs3888173	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,29:32:56:0.518:2	0/1:34,18:31:52:0.346:2	./.	./.	./.	./.
chr11	62369881	rs35156678	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,19:31:42:0.452:2	0/1:35,25:30:60:0.417:2	0/1:20,14:28:34:0.412:2	./.	0/1:6,45:31:51:0.882:2	0/1:22,30:32:52:0.577:2	0/1:17,14:31:31:0.452:2	./.
chr11	62369884	rs35880596	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,18:30:38:0.474:2	0/1:34,25:32:59:0.424:2	0/1:17,14:31:31:0.452:2	./.	0/1:6,45:32:51:0.882:2	0/1:21,29:33:50:0.580:2	0/1:15,14:32:29:0.483:2	./.
chr11	62370127	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.
chr11	62376557	rs35971607	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,28:30:68:0.412:2	./.	./.	./.
chr11	62378660	rs12808829	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:31:14:0.571:2	0/1:1,4:30:5:0.800:2	./.	./.	0/1:1,5:33:7:0.833:2	0/1:5,8:32:13:0.615:2	./.	./.
chr11	62378801	rs11553576	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,18:30:49:0.367:2	0/1:22,16:29:38:0.421:2	0/1:31,12:32:43:0.279:2	0/1:26,11:31:37:0.297:2	0/1:0,42:30:42:1.00:2	0/1:13,23:30:36:0.639:2	0/1:26,14:30:40:0.350:2	./.
chr11	62381106	rs1799959	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,14:30:14:1.00:2	0/1:0,6:29:6:1.00:2	./.	0/1:0,13:29:13:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,7:31:7:1.00:2	0/1:9,9:32:18:0.500:2	0/1:0,11:28:11:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,9:29:9:1.00:2
chr11	62381180	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,60:30:129:0.465:2	./.	./.	./.	./.	./.	./.
chr11	62381808	rs1801144	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,27:32:75:0.360:2	0/1:39,28:31:67:0.418:2	0/1:26,18:33:44:0.409:2	./.	0/1:1,65:32:66:0.985:2	0/1:38,34:33:72:0.472:2	0/1:24,39:32:63:0.619:2	./.
chr11	62382186	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,30:31:53:0.566:2	./.	./.	./.	./.	./.
chr11	62384610	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,3:32:30:0.100:2	./.
chr11	62397114	rs76572368	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,11:28:53:0.208:2	./.	./.	./.	0/1:37,14:28:51:0.275:2	./.
chr11	62416228	rs140531077	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,58:31:133:0.436:2	./.	./.	./.	./.
chr11	62416859	rs117991865	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,69:31:162:0.426:2	./.	./.	./.
chr11	62430659	rs597259	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:31:63:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,2:29:2:1.00:2	0/1:41,28:30:70:0.406:2	0/1:21,26:31:47:0.553:2	0/1:28,43:31:71:0.606:2	0/1:26,27:30:53:0.509:2	./.	0/1:0,80:32:80:1.00:2	0/1:30,29:31:59:0.492:2	0/1:0,97:31:98:1.00:2
chr11	62434173	rs11231181	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,12:31:34:0.353:2	0/1:16,21:31:37:0.568:2	0/1:15,29:32:44:0.659:2	./.	0/1:2,42:31:44:0.955:2	./.	0/1:14,10:32:24:0.417:2	./.
chr11	62439569	rs13941	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:32:30:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,5:30:5:1.00:2	0/1:22,36:30:58:0.621:2	0/1:25,29:31:54:0.537:2	0/1:28,21:31:49:0.429:2	0/1:17,17:32:34:0.500:2	./.	0/1:0,36:32:36:1.00:2	0/1:18,14:31:32:0.438:2	0/1:0,15:31:15:1.00:2
chr11	62439572	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,4:33:57:0.070:2	./.	./.	./.	./.	./.	./.	./.
chr11	62455503	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:33:58:0.069:2	./.	./.	./.
chr11	62458275	rs6856	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:38,19:33:57:0.333:2	0/1:21,15:33:36:0.417:2	./.	./.	0/1:26,31:31:57:0.544:2	./.	./.	0/1:2,65:33:67:0.970:2	./.	0/1:22,24:33:46:0.522:2	./.
chr11	62469929	rs72929434	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:50,56:31:106:0.528:2	0/1:29,29:30:58:0.500:2	./.	./.	0/1:65,39:29:104:0.375:2	./.	./.	0/1:0,108:30:108:1.00:2	./.	0/1:47,41:30:88:0.466:2	./.
chr11	62473763	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.	./.
chr11	62484531	rs142868058	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:106,67:30:173:0.387:2	./.	./.	./.	./.	./.	./.	./.
chr11	62484540	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:160,4:32:164:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr11	62496519	rs584845	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:29,34:32:63:0.540:2	0/1:16,17:33:33:0.515:2	./.	./.	0/1:52,43:32:95:0.453:2	./.	0/1:55,40:32:95:0.421:2	0/1:1,106:32:107:0.991:2	./.	0/1:33,40:33:73:0.548:2	./.
chr11	62505764	rs6675	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:6,7:33:13:0.538:2	./.	./.	./.	0/1:4,4:32:8:0.500:2	./.	./.	0/1:0,13:31:13:1.00:2	./.	0/1:11,5:30:16:0.313:2	./.
chr11	62519565	rs544641	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,9:31:23:0.391:2	./.	./.	./.	./.
chr11	62520537	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:143,4:33:147:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr11	62521475	rs201229122	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:18,26:31:44:0.591:2	0/1:28,20:32:48:0.417:2	./.	./.	0/1:97,43:33:140:0.307:2	./.	./.	0/1:2,87:32:89:0.978:2	./.	0/1:33,38:32:71:0.535:2	./.
chr11	62532798	rs41542313	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,74:30:181:0.409:2	./.	./.	./.	./.
chr11	62543291	rs111246317	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,13:28:26:0.500:2	./.
chr11	62557369	rs191664124	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,91:32:194:0.469:2	./.	./.	./.	./.
chr11	62557476	rs143268991	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,45:32:89:0.506:2
chr11	62559385	rs2584918	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,15:28:60:0.250:2	./.	./.	./.	./.
chr11	62559405	rs201573295	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,8:31:33:0.242:2	./.	./.	./.	./.
chr11	62563353	rs539465	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:33:17:1.00:2	0/1:0,7:32:7:1.00:2	./.	0/1:0,18:32:18:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,21:33:21:1.00:2
chr11	62563977	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:32:87:0.046:2
chr11	62564009	rs4693	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,9:31:27:0.333:2	0/1:9,10:32:19:0.526:2	0/1:1,2:32:3:0.667:2	0/1:22,22:32:44:0.500:2	0/1:21,25:31:46:0.543:2	0/1:0,27:30:27:1.00:2	0/1:2,32:32:34:0.941:2	0/1:2,25:31:27:0.926:2	./.	0/1:15,15:31:31:0.500:2	./.
chr11	62575025	rs2228626	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,61:33:122:0.500:2	./.	./.	./.	./.
chr11	62592961	rs2228627	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,48:32:131:0.366:2	./.	./.	./.	./.
chr11	62594689	rs144967757	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,30:31:78:0.385:2	./.	./.	./.
chr11	62598671	rs79941543	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,62:29:150:0.413:2	./.	./.	./.
chr11	62602983	rs2298636	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,40:32:95:0.426:2	./.	./.	./.	./.
chr11	62652779	rs4726	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,6:32:11:0.545:2	0/1:78,59:33:137:0.431:2	./.	0/1:52,49:32:101:0.485:2	./.	0/1:59,62:33:121:0.512:2	./.	./.	./.
chr11	62677188	rs5026237	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,11:32:39:0.282:2	./.	./.	./.	./.
chr11	62677220	rs2067480	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:27:4:0.750:2	0/1:38,38:31:76:0.500:2	./.	./.	./.	./.	./.	0/1:28,32:31:60:0.533:2	./.
chr11	62677529	rs2067478	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,13:29:33:0.394:2	./.	./.	./.	./.
chr11	62678306	rs2067477	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,13:31:20:0.650:2	0/1:87,101:31:188:0.537:2	./.	./.	./.	./.	./.	0/1:71,70:31:141:0.496:2	./.
chr11	62744658	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:32:88:0.045:2
chr11	62751812	rs11568629	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,11:31:35:0.314:2	./.	./.	./.	./.	./.	./.	./.
chr11	62751911	rs11568628	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,16:29:37:0.432:2	./.	./.	./.	./.	./.	./.	./.
chr11	62751983	rs11568630	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,26:31:51:0.510:2	./.	./.	./.	./.
chr11	62763544	rs45438191	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,35:30:68:0.515:2	./.	./.	./.	./.
chr11	62766431	rs2276299	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,25:33:45:0.556:2	0/1:11,16:31:27:0.593:2	./.	./.	0/1:49,34:32:83:0.410:2	0/1:27,25:32:52:0.481:2	./.	0/1:54,34:32:88:0.386:2	0/1:34,23:33:57:0.404:2	./.	./.
chr11	62782278	rs4149180	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,31:30:56:0.554:2	./.	0/1:21,36:29:57:0.632:2	./.	./.	./.	./.
chr11	62847453	rs7945121	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:29:49:1.00:2	0/1:1,58:28:59:0.983:2	0/1:7,4:28:11:0.364:2	0/1:0,114:29:114:1.00:2	0/1:0,51:29:51:1.00:2	0/1:28,53:29:81:0.654:2	0/1:0,68:29:68:1.00:2	0/1:0,78:28:78:1.00:2	0/1:51,51:29:102:0.500:2	0/1:56,49:29:105:0.467:2	0/1:65,58:29:123:0.472:2
chr11	62848445	rs11231340	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,84:33:85:0.988:2	0/1:0,66:32:66:1.00:2	0/1:2,4:32:6:0.667:2	0/1:65,44:33:109:0.404:2	0/1:2,81:32:83:0.976:2	./.	0/1:2,71:32:74:0.973:2	0/1:71,61:33:132:0.462:2	./.	0/1:58,41:33:100:0.414:2	./.
chr11	62848487	rs11231341	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:33:82:1.00:2	0/1:1,47:32:48:0.979:2	0/1:2,4:32:6:0.667:2	0/1:1,88:33:89:0.989:2	0/1:0,47:32:47:1.00:2	0/1:54,50:32:104:0.481:2	0/1:0,50:33:50:1.00:2	0/1:0,103:32:103:1.00:2	0/1:42,45:34:87:0.517:2	0/1:47,36:33:83:0.434:2	0/1:48,46:33:94:0.489:2
chr11	62848498	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:30:105:0.038:2	./.	./.	./.
chr11	62848568	rs11231342	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,34:33:35:0.971:2	0/1:0,24:31:24:1.00:2	0/1:2,4:32:6:0.667:2	0/1:26,42:32:68:0.618:2	0/1:1,32:31:33:0.970:2	./.	0/1:1,29:32:30:0.967:2	0/1:40,32:32:72:0.444:2	./.	0/1:29,9:32:38:0.237:2	./.
chr11	62850719	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:33:115:0.035:2	./.	./.
chr11	62863518	rs7113279	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,70:33:70:1.00:2	0/1:0,48:32:48:1.00:2	./.	0/1:55,55:33:110:0.500:2	0/1:3,89:32:92:0.967:2	./.	0/1:2,124:33:126:0.984:2	0/1:64,55:32:119:0.462:2	./.	0/1:56,35:33:91:0.385:2	./.
chr11	62886744	rs193179908	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,77:32:176:0.438:2	./.	./.	./.
chr11	62886800	rs4963245	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:17,33:33:50:0.660:2	0/1:20,23:33:43:0.535:2	0/1:4,3:33:7:0.429:2	./.	0/1:0,48:32:48:1.00:2	./.	0/1:2,61:33:63:0.968:2	./.	./.	./.	./.
chr11	62902172	rs1939782	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,138:32:139:0.993:2	0/1:0,79:32:79:1.00:2	0/1:0,16:33:16:1.00:2	0/1:1,139:32:140:0.993:2	0/1:0,143:32:143:1.00:2	0/1:0,148:32:148:1.00:2	0/1:0,124:32:124:1.00:2	0/1:0,157:32:157:1.00:2	0/1:0,163:33:163:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,186:31:186:1.00:2
chr11	62910849	rs1939749	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:32:54:1.00:2	0/1:0,32:32:32:1.00:2	0/1:1,3:30:4:0.750:2	0/1:0,47:31:47:1.00:2	0/1:0,40:31:40:1.00:2	0/1:13,19:31:32:0.594:2	0/1:3,41:31:44:0.932:2	0/1:0,47:31:47:1.00:2	0/1:20,21:33:41:0.512:2	0/1:0,48:32:48:1.00:2	0/1:29,28:31:57:0.491:2
chr11	62911079	rs1939748	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,95:33:96:0.990:2	0/1:0,54:33:54:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,112:33:112:1.00:2	0/1:0,102:32:102:1.00:2	0/1:70,47:32:117:0.402:2	0/1:0,120:32:120:1.00:2	0/1:2,114:33:116:0.983:2	0/1:74,42:34:116:0.362:2	0/1:0,94:32:94:1.00:2	0/1:85,51:33:138:0.375:2
chr11	62931484	rs6591771	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,56:30:122:0.459:2	0/1:41,31:29:72:0.431:2	0/1:4,6:31:10:0.600:2	0/1:72,43:29:115:0.374:2	./.	0/1:56,68:29:124:0.548:2	0/1:0,108:29:108:1.00:2	0/1:53,49:29:102:0.480:2	./.	0/1:2,78:29:80:0.975:2	./.
chr11	62932049	rs17157907	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,30:31:53:0.566:2	./.	./.	./.
chr11	62933622	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,5:33:157:0.032:2	./.	./.	0/1:132,4:32:136:0.029:2	./.
chr11	62933635	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,5:31:147:0.034:2	./.	./.	./.	./.
chr11	62933676	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,5:32:107:0.047:2	./.	./.	0/1:98,4:33:102:0.039:2	./.
chr11	62951221	rs11231397	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:93,84:33:177:0.475:2	0/1:41,57:32:98:0.582:2	./.	0/1:96,91:33:187:0.487:2	./.	0/1:80,97:32:177:0.548:2	0/1:2,178:33:180:0.989:2	./.	./.	0/1:101,86:33:187:0.460:2	./.
chr11	62984868	rs11231409	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:15,24:33:39:0.615:2	0/1:15,15:32:30:0.500:2	./.	0/1:29,25:32:55:0.463:2	./.	0/1:31,22:32:53:0.415:2	0/1:0,45:33:45:1.00:2	./.	./.	0/1:20,8:33:29:0.286:2	./.
chr11	62996860	rs35722529	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,64:31:164:0.390:2	./.	./.	./.
chr11	63057925	rs1790218	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,60:32:129:0.465:2	0/1:23,46:32:69:0.667:2	0/1:10,9:31:19:0.474:2	0/1:0,143:31:143:1.00:2	0/1:1,130:31:131:0.992:2	0/1:69,85:31:154:0.552:2	./.	0/1:93,67:31:160:0.419:2	0/1:0,152:32:152:1.00:2	./.	0/1:80,68:32:148:0.459:2
chr11	63064823	rs576641	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,44:33:86:0.512:2	0/1:36,26:32:62:0.419:2	0/1:0,7:33:7:1.00:2	0/1:0,132:33:132:1.00:2	0/1:3,155:32:158:0.981:2	0/1:82,79:33:161:0.491:2	./.	0/1:107,87:32:194:0.448:2	0/1:0,182:33:182:1.00:2	0/1:53,63:34:116:0.543:2	0/1:93,64:33:157:0.408:2
chr11	63064894	rs77350650	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,27:30:92:0.293:2	./.	./.	./.
chr11	63072184	rs72926329	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:51,42:31:93:0.452:2	0/1:28,21:31:49:0.429:2	./.	./.	0/1:28,26:32:54:0.481:2	./.	./.	./.	./.	./.	./.
chr11	63072310	rs1201559	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:57,40:31:97:0.412:2	0/1:41,19:31:60:0.317:2	./.	0/1:0,90:31:90:1.00:2	0/1:0,106:31:106:1.00:2	0/1:54,45:31:99:0.455:2	./.	0/1:86,66:31:152:0.434:2	0/1:2,144:32:146:0.986:2	./.	0/1:85,70:32:155:0.452:2
chr11	63141254	rs17654567	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,64:30:140:0.457:2	./.	./.	./.
chr11	63175626	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,4:29:94:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr11	63256441	rs940611	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:32:81:0.049:2	./.	./.	./.	./.	./.
chr11	63258416	rs10897424	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:27:43:1.00:2	0/1:0,8:26:8:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,55:27:55:1.00:2	0/1:0,46:26:46:1.00:2	0/1:0,44:27:44:1.00:2	0/1:0,20:27:21:1.00:2	0/1:1,47:27:48:0.979:2	0/1:0,40:29:40:1.00:2	0/1:0,36:26:36:1.00:2	0/1:0,30:26:30:1.00:2
chr11	63304371	rs190369964	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,61:31:111:0.550:2	./.	./.
chr11	63313644	rs584905	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,108:29:108:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,37:31:37:1.00:2	0/1:3,141:29:144:0.979:2	0/1:2,176:29:178:0.989:2	0/1:0,182:29:182:1.00:2	0/1:0,177:29:177:1.00:2	0/1:0,187:29:187:1.00:2	0/1:0,188:30:188:1.00:2	0/1:1,144:29:145:0.993:2	0/1:0,148:30:148:1.00:2
chr11	63365598	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,46:30:111:0.414:2	./.	./.
chr11	63381458	rs61929725	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:29:11:0.545:2	./.	0/1:47,46:31:93:0.495:2	./.	./.	./.	0/1:32,28:31:60:0.467:2	./.	./.
chr11	63400493	rs17656941	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,62:33:133:0.466:2	./.	./.
chr11	63400529	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:154,4:32:158:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr11	63449125	rs11551944	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,7:31:14:0.500:2	./.	./.
chr11	63487386	rs542998	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,58:32:59:0.983:2	0/1:2,31:33:33:0.939:2	0/1:5,4:32:9:0.444:2	0/1:0,95:33:95:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,83:32:83:1.00:2	0/1:45,36:33:81:0.444:2	0/1:1,89:33:90:0.989:2	0/1:43,26:34:70:0.377:2	0/1:0,57:33:57:1.00:2	0/1:0,88:32:88:1.00:2
chr11	63517666	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:32:115:0.035:2	./.
chr11	63520542	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:193,5:34:198:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr11	63520580	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:140,4:31:144:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr11	63585804	rs643634	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:12,12:30:24:0.500:2	0/1:0,22:30:22:1.00:2	0/1:0,14:31:14:1.00:2	./.	0/1:0,31:31:31:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,11:31:11:1.00:2	0/1:7,6:32:13:0.462:2
chr11	63586392	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:28:65:0.062:2	./.
chr11	63679369	rs320108	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,3:33:3:1.00:2	./.	./.	0/1:0,6:30:6:1.00:2	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	0/1:0,6:33:6:1.00:2	0/1:0,2:34:2:1.00:2
chr11	63681513	rs10897461	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:33:69:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,115:32:115:1.00:2	0/1:1,74:31:75:0.987:2	0/1:0,103:32:103:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,81:33:81:1.00:2	0/1:0,71:32:71:1.00:2	0/1:1,94:32:95:0.989:2
chr11	63713317	rs3740637	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,70:31:71:0.986:2	0/1:0,28:32:28:1.00:2	0/1:9,8:31:17:0.471:2	0/1:45,49:31:94:0.521:2	./.	./.	./.	./.	./.	./.	./.
chr11	63764651	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:31:147:0.027:2	./.	./.	./.
chr11	63766819	rs75347416	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,4:24:23:0.174:2	./.	./.	./.
chr11	63767186	rs709594	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,3:32:3:1.00:2	0/1:0,5:33:5:1.00:2	./.	0/1:1,9:32:10:0.900:2	./.	./.	./.	./.	./.	./.	./.
chr11	63883847	rs200588570	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,40:30:68:0.588:2
chr11	63883985	rs614397	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:29:11:1.00:2	0/1:49,27:27:76:0.355:2	0/1:53,49:28:102:0.480:2	0/1:4,79:28:83:0.952:2	0/1:55,55:29:110:0.500:2	0/1:2,88:28:90:0.978:2	0/1:0,74:29:74:1.00:2	0/1:0,48:28:48:1.00:2	0/1:0,62:28:62:1.00:2
chr11	63884027	rs614035	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:32:6:1.00:2	0/1:50,25:31:75:0.333:2	0/1:37,35:30:72:0.486:2	0/1:37,24:31:61:0.393:2	0/1:43,43:32:86:0.500:2	0/1:1,80:32:81:0.988:2	0/1:35,30:33:65:0.462:2	0/1:0,39:32:39:1.00:2	0/1:0,59:32:59:1.00:2
chr11	63884239	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,40:32:87:0.460:2	./.	./.
chr11	63884453	rs3751120	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,39:30:39:1.00:2	0/1:0,26:30:27:1.00:2	./.	./.	./.	./.	0/1:8,21:29:29:0.724:2	./.	./.	./.	./.
chr11	63884561	rs34856996	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:107,81:30:188:0.431:2	./.	./.	./.	./.	./.	./.
chr11	63884747	rs35247680	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,46:29:74:0.630:2
chr11	63885287	rs947939	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,61:31:133:0.459:2	./.	./.	0/1:74,62:33:136:0.456:2	./.	./.
chr11	63885305	rs3824854	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,65:32:152:0.428:2	./.	0/1:72,63:33:135:0.467:2	./.	./.	./.	./.	0/1:60,50:33:110:0.455:2
chr11	63885572	rs147439962	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,21:31:47:0.447:2	./.	./.	./.	./.
chr11	63885632	rs4379854	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:32:81:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,115:32:115:1.00:2	0/1:0,135:32:135:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,123:32:123:1.00:2	0/1:2,147:32:149:0.987:2	0/1:0,123:34:123:1.00:2	0/1:0,86:33:86:1.00:2	0/1:0,82:31:82:1.00:2
chr11	63885704	rs677447	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,14:31:14:1.00:2	0/1:44,29:31:73:0.397:2	0/1:54,52:31:106:0.491:2	0/1:38,40:29:78:0.513:2	0/1:53,59:31:112:0.527:2	0/1:3,123:31:126:0.976:2	0/1:45,40:31:85:0.471:2	0/1:1,51:31:52:0.981:2	0/1:0,59:30:59:1.00:2
chr11	63885769	rs688241	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,15:30:20:0.750:2	0/1:8,13:31:21:0.619:2	./.	./.	./.	./.	./.	./.
chr11	63886395	rs377157389	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,6:30:11:0.545:2	./.	./.	./.	./.	./.
chr11	63886539	rs663149	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:32:8:1.00:2	0/1:48,71:32:119:0.597:2	0/1:59,43:32:102:0.422:2	0/1:34,56:31:90:0.622:2	0/1:51,45:32:96:0.469:2	0/1:2,109:32:111:0.982:2	0/1:60,51:33:111:0.459:2	0/1:1,110:32:111:0.991:2	0/1:0,106:32:106:1.00:2
chr11	63965419	rs375422757	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,4:30:26:0.154:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	63970625	rs2070232	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,15:31:21:0.714:2	0/1:27,13:31:40:0.325:2	./.	./.	./.	./.	./.	./.
chr11	63974970	.	T	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,6:26:83:0.072:2	0/1:68,12:13:80:0.150:2	0/1:58,14:13:72:0.194:2	0/1:32,7:20:39:0.179:2	./.
chr11	63979162	rs17851033	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,39:33:82:0.476:2	0/1:40,40:33:80:0.500:2	./.	./.	./.	./.	./.	./.
chr11	63987216	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:32:71:0.056:2	./.	./.
chr11	63988045	rs3802932	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,25:30:25:1.00:2	0/1:0,6:31:6:1.00:2	./.	./.	./.	./.	0/1:3,6:32:9:0.667:2	./.	./.	./.	./.
chr11	63988102	rs3802933	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,32:30:67:0.478:2	./.	0/1:34,33:30:67:0.493:2	./.	./.	./.	./.	0/1:29,15:30:44:0.341:2
chr11	63990800	rs201257852	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,47:30:100:0.470:2	./.	./.	./.
chr11	63991581	rs11549690	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,24:32:55:0.436:2
chr11	63991801	rs1059440	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,22:29:48:0.458:2	./.	0/1:37,27:28:64:0.422:2	./.	./.	./.	./.	0/1:19,11:28:30:0.367:2
chr11	63993287	rs11549691	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,12:31:21:0.571:2	0/1:11,11:31:22:0.500:2	./.	./.	./.	./.	./.	./.
chr11	63997329	rs633561	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:29:46:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,56:29:56:1.00:2	0/1:1,72:30:73:0.986:2	0/1:0,47:28:47:1.00:2	0/1:0,73:29:73:1.00:2	0/1:0,82:29:82:1.00:2	0/1:0,71:30:71:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,56:29:56:1.00:2
chr11	63997338	rs633557	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:31:49:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,69:33:69:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,59:31:59:1.00:2
chr11	64004643	rs12294913	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,58:32:58:1.00:2	0/1:1,30:31:31:0.968:2	./.	./.	./.	./.	0/1:19,30:32:49:0.612:2	./.	./.	./.	./.
chr11	64004692	rs12366035	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:30:8:1.00:2	./.	0/1:41,31:31:72:0.431:2	./.	0/1:29,22:31:51:0.431:2	0/1:2,85:31:87:0.977:2	./.	0/1:60,27:32:87:0.310:2	0/1:82,46:32:128:0.359:2
chr11	64004723	rs56271783	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:1,42:27:43:0.977:2	0/1:1,29:28:30:0.967:2	./.	./.	./.	./.	0/1:12,12:27:24:0.500:2	./.	./.	./.	./.
chr11	64009879	rs4672	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,14:32:34:0.412:2
chr11	64011441	rs17849753	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:29:65:1.00:2	0/1:0,29:28:29:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,65:29:65:1.00:2	0/1:0,93:29:93:1.00:2	0/1:0,89:30:89:1.00:2	0/1:0,111:30:111:1.00:2	0/1:0,101:30:101:1.00:2	0/1:0,94:30:95:1.00:2	0/1:2,66:30:68:0.971:2	0/1:1,78:29:79:0.987:2
chr11	64012225	rs605187	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:33:41:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,65:33:65:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,66:32:66:1.00:2	0/1:1,72:33:73:0.986:2	0/1:0,88:33:88:1.00:2	0/1:0,63:34:63:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,54:32:54:1.00:2
chr11	64013898	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:32:192:0.021:2	./.	./.	./.	./.	./.
chr11	64013905	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:32:188:0.021:2	0/1:181,4:32:185:0.022:2	./.	./.	./.	./.
chr11	64014017	rs1063811	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:28:35:0.114:2	./.	./.
chr11	64022459	rs632439	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:31:64:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,66:29:66:1.00:2	0/1:0,88:29:88:1.00:2	0/1:0,58:29:58:1.00:2	0/1:0,80:29:80:1.00:2	0/1:1,67:30:68:0.985:2	0/1:0,72:30:72:1.00:2	0/1:1,67:29:69:0.985:2	0/1:0,72:29:72:1.00:2
chr11	64023971	rs7943988	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:29:7:1.00:2	./.	0/1:49,36:30:85:0.424:2	./.	0/1:46,40:29:86:0.465:2	0/1:3,101:29:104:0.971:2	./.	0/1:40,39:30:79:0.494:2	0/1:36,50:30:87:0.581:2
chr11	64026144	rs2244625	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,58:29:146:0.397:2	0/1:43,45:28:89:0.511:2	0/1:86,72:28:161:0.456:2	0/1:5,128:29:134:0.962:2	0/1:1,87:29:90:0.989:2	0/1:0,52:28:52:1.00:2	0/1:33,27:28:60:0.450:2
chr11	64026639	rs12146487	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,5:32:7:0.714:2	./.	./.	0/1:2,9:32:11:0.818:2	0/1:2,3:27:5:0.600:2	./.
chr11	64031241	rs35169799	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,31:32:31:1.00:2	0/1:1,16:30:17:0.941:2	./.	./.	./.	./.	0/1:37,27:31:64:0.422:2	./.	./.	./.	./.
chr11	64034866	rs7938380	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,11:29:17:0.647:2	./.	0/1:11,7:28:18:0.389:2	./.	./.	./.	./.	./.
chr11	64039175	rs2286615	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,13:28:22:0.591:2	./.	./.	0/1:11,6:31:17:0.353:2	0/1:3,12:30:15:0.800:2	./.
chr11	64044480	rs188080175	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,30:31:60:0.500:2	./.	./.	./.
chr11	64055562	rs116483940	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,18:29:46:0.391:2
chr11	64056178	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,28:33:66:0.424:2	./.	./.
chr11	64056629	rs112280262	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,16:30:22:0.727:2	./.	./.	./.	./.
chr11	64056744	rs183799439	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:35:165:0.024:2	./.	./.
chr11	64066859	rs2232417	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,11:33:11:1.00:2	0/1:0,3:33:3:1.00:2	./.	0/1:0,25:32:25:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,29:32:29:1.00:2	0/1:1,13:33:14:0.929:2	0/1:0,7:33:7:1.00:2	0/1:0,8:32:8:1.00:2
chr11	64066999	rs953778	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,10:32:10:1.00:2	0/1:0,3:34:3:1.00:2	./.	0/1:6,15:31:21:0.714:2	0/1:19,13:32:32:0.406:2	./.	0/1:9,27:32:36:0.750:2	./.	./.	./.	./.
chr11	64068310	rs2286614	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,33:30:54:0.635:2	./.	0/1:21,23:29:46:0.523:2	./.	./.	./.	./.	0/1:11,7:31:18:0.389:2
chr11	64071272	rs117629442	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,40:32:66:0.606:2	./.	./.	./.	./.	./.
chr11	64081445	rs2276014	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,42:31:81:0.519:2	./.	0/1:50,44:31:94:0.468:2	0/1:36,47:31:83:0.566:2	./.	./.	./.	0/1:31,26:32:57:0.456:2
chr11	64083221	rs200986301	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,4:32:62:0.065:2	./.	./.	./.	./.	./.	./.
chr11	64083252	rs72924126	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,4:31:32:0.125:2	./.	./.	./.	./.	./.	./.
chr11	64083328	rs79204587	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,10:31:76:0.132:2	./.	0/1:16,7:33:23:0.304:2	0/1:121,10:33:131:0.076:2	0/1:90,32:32:122:0.262:2	./.	0/1:83,31:33:114:0.272:2	0/1:122,14:31:136:0.103:2	0/1:89,19:32:109:0.176:2	./.	0/1:79,18:33:97:0.186:2
chr11	64083331	rs80310817	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:67,11:33:79:0.141:2	./.	0/1:16,7:34:23:0.304:2	0/1:131,10:32:141:0.071:2	0/1:92,31:33:123:0.252:2	./.	0/1:83,30:33:113:0.265:2	0/1:122,15:32:137:0.109:2	0/1:90,19:34:109:0.174:2	./.	0/1:84,18:32:102:0.176:2
chr11	64084953	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,4:29:69:0.058:2	./.	./.	./.	./.	./.	./.	./.
chr11	64084987	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr11	64085785	rs7938623	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:31:30:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,56:31:57:1.00:2	0/1:1,45:30:46:0.978:2	0/1:0,74:31:74:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,14:32:14:1.00:2
chr11	64107735	rs663743	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,40:31:82:0.488:2	./.	./.	0/1:36,34:33:70:0.486:2	0/1:32,28:31:60:0.467:2	./.
chr11	64108124	rs147780757	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,13:29:34:0.382:2	./.
chr11	64109118	rs647152	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,20:31:37:0.541:2	./.	./.	0/1:0,29:32:29:1.00:2	0/1:18,12:28:30:0.400:2	./.
chr11	64110668	rs574835	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,7:31:18:0.389:2	./.	./.	0/1:0,9:33:9:1.00:2	0/1:5,5:32:10:0.500:2	./.
chr11	64110683	rs479552	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,6:31:17:0.353:2	./.	./.	0/1:0,6:33:6:1.00:2	0/1:3,3:30:6:0.500:2	./.
chr11	64111928	rs685870	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	0/1:18,22:27:40:0.550:2	0/1:24,26:29:50:0.520:2	0/1:22,15:27:37:0.405:2	0/1:1,44:28:45:0.978:2	0/1:0,50:28:50:1.00:2	0/1:1,40:27:41:0.976:2	0/1:20,24:25:44:0.545:2
chr11	64112050	rs35864060	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,22:32:22:1.00:2	0/1:1,13:31:14:0.929:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	64116843	rs1318165	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:30:19:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,3:22:3:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,37:32:37:1.00:2	0/1:1,41:31:42:0.976:2
chr11	64124515	rs612448	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,64:29:141:0.454:2	0/1:69,53:30:122:0.434:2	./.	./.	0/1:1,87:32:88:0.989:2	0/1:38,47:30:85:0.553:2	./.
chr11	64124622	rs61886888	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,32:34:73:0.438:2	./.	./.
chr11	64124823	rs519763	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,14:31:29:0.483:2	0/1:20,21:30:41:0.512:2	./.	./.	0/1:0,53:31:53:1.00:2	0/1:10,11:30:21:0.524:2	./.
chr11	64124940	rs600377	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,30:29:76:0.395:2	0/1:41,20:28:61:0.328:2	./.	./.	0/1:0,68:30:68:1.00:2	0/1:22,23:29:45:0.511:2	./.
chr11	64127744	rs521950	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:30:10:0.300:2	./.	./.	0/1:0,3:34:3:1.00:2	./.	./.
chr11	64138805	rs11542299	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,22:27:53:0.415:2	./.	./.	0/1:0,29:30:29:1.00:2	0/1:18,21:27:39:0.538:2	./.
chr11	64217467	rs76247963	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,18:33:24:0.750:2	./.	./.
chr11	64359286	rs3825016	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:26:11:0.455:2	0/1:0,9:29:9:1.00:2	0/1:11,8:29:19:0.421:2	0/1:0,14:30:14:1.00:2	0/1:7,9:26:16:0.563:2	0/1:0,7:30:7:1.00:2	0/1:1,6:24:7:0.857:2	./.
chr11	64360274	rs11231825	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:32:5:0.800:2	0/1:50,42:30:92:0.457:2	0/1:1,126:30:127:0.992:2	0/1:56,52:30:108:0.481:2	0/1:1,105:30:106:0.991:2	0/1:65,44:29:109:0.404:2	0/1:0,103:31:104:1.00:2	0/1:38,40:31:78:0.513:2	./.
chr11	64367325	rs1630320	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:29:17:1.00:2	0/1:0,7:27:7:1.00:2	./.	0/1:0,20:29:20:1.00:2	0/1:0,26:27:26:1.00:2	0/1:0,9:28:9:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,31:29:31:1.00:2	0/1:0,13:27:13:1.00:2	0/1:0,23:28:23:1.00:2	0/1:0,7:26:7:1.00:2
chr11	64367862	rs7932775	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,27:32:27:1.00:2	0/1:0,8:32:8:1.00:2	./.	0/1:14,16:33:30:0.533:2	./.	0/1:16,20:32:36:0.556:2	./.	0/1:23,10:32:33:0.303:2	./.	0/1:10,10:32:20:0.500:2	0/1:7,13:32:20:0.650:2
chr11	64415767	rs3825074	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,49:30:52:0.942:2	0/1:2,28:32:30:0.933:2	0/1:5,6:32:11:0.545:2	0/1:27,28:30:56:0.509:2	./.	./.	./.	./.	./.	0/1:45,35:31:80:0.438:2	0/1:31,41:30:72:0.569:2
chr11	64416356	rs148473653	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,37:31:65:0.569:2	./.
chr11	64416369	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:112,4:32:117:0.034:2	./.	./.	./.	./.	./.	./.
chr11	64418900	rs526338	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,14:32:22:0.636:2	0/1:85,78:30:163:0.479:2	0/1:2,183:31:185:0.989:2	0/1:89,74:31:163:0.454:2	0/1:4,170:32:174:0.977:2	0/1:88,97:31:185:0.524:2	0/1:1,135:32:136:0.993:2	0/1:55,56:31:111:0.505:2	./.
chr11	64480641	rs2518907	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.
chr11	64494836	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,4:29:63:0.063:2	./.	./.	./.	./.	./.	./.
chr11	64496357	rs2230414	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,9:31:22:0.409:2
chr11	64503363	rs10897524	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,17:30:35:0.486:2
chr11	64519062	rs532747	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,27:32:53:0.509:2
chr11	64559898	rs10897526	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,18:33:18:1.00:2	0/1:2,22:33:24:0.917:2	./.	./.	./.	0/1:0,42:33:42:1.00:2	./.	./.	./.	0/1:16,28:33:44:0.636:2	0/1:0,27:33:27:1.00:2
chr11	64572018	rs2959656	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:28:63:1.00:2	0/1:0,38:27:38:1.00:2	0/1:0,7:27:7:1.00:2	0/1:0,92:28:92:1.00:2	0/1:1,89:26:91:0.989:2	0/1:0,68:27:68:1.00:2	0/1:1,89:27:90:0.989:2	0/1:0,79:27:79:1.00:2	0/1:0,72:28:72:1.00:2	0/1:0,79:28:79:1.00:2	0/1:0,74:26:74:1.00:2
chr11	64572557	rs540012	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:29:42:1.00:2	0/1:0,29:28:29:1.00:2	0/1:0,7:28:7:1.00:2	0/1:0,58:29:58:1.00:2	0/1:1,81:28:82:0.988:2	0/1:0,55:28:55:1.00:2	0/1:0,78:29:78:1.00:2	0/1:0,70:28:70:1.00:2	0/1:0,75:30:75:1.00:2	0/1:0,55:28:55:1.00:2	0/1:0,55:28:55:1.00:2
chr11	64572602	rs2071313	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,58:32:59:0.983:2	0/1:1,28:31:29:0.966:2	0/1:0,7:31:7:1.00:2	0/1:0,73:31:73:1.00:2	0/1:55,54:30:109:0.495:2	0/1:0,68:31:68:1.00:2	./.	./.	0/1:67,43:32:110:0.391:2	0/1:38,28:32:66:0.424:2	0/1:30,39:32:69:0.565:2
chr11	64577147	rs61736636	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:4,70:31:74:0.946:2	0/1:0,30:32:30:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:33,32:30:66:0.492:2	./.
chr11	64591972	rs10792447	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,26:32:63:0.413:2	0/1:22,26:32:48:0.542:2	0/1:4,5:30:9:0.556:2	0/1:0,99:31:100:1.00:2	0/1:30,44:32:74:0.595:2	0/1:1,75:31:76:0.987:2	0/1:37,42:32:79:0.532:2	0/1:1,100:32:101:0.990:2	0/1:51,68:32:119:0.571:2	0/1:50,31:32:81:0.383:2	0/1:50,44:31:94:0.468:2
chr11	64597205	rs7936466	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.
chr11	64597506	rs3741395	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:6,6:30:12:0.500:2	./.	./.	0/1:0,12:29:12:1.00:2	./.	0/1:0,15:28:15:1.00:2	./.	0/1:0,18:29:18:1.00:2	0/1:5,6:31:11:0.545:2	0/1:13,5:29:18:0.278:2	./.
chr11	64600381	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:32:83:0.048:2	./.	./.	./.	./.
chr11	64605548	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.
chr11	64609304	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:31:70:0.057:2	./.	./.
chr11	64621856	rs3897618	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:25:17:1.00:2	0/1:0,9:26:9:1.00:2	./.	0/1:0,16:28:16:1.00:2	0/1:0,13:26:13:1.00:2	0/1:0,14:26:14:1.00:2	0/1:0,5:25:5:1.00:2	0/1:0,6:25:6:1.00:2	0/1:0,18:26:18:1.00:2	0/1:0,14:24:14:1.00:2	0/1:0,8:28:8:1.00:2
chr11	64622042	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:33:163:0.025:2	./.
chr11	64622869	rs10897533	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:80,58:33:138:0.420:2	0/1:38,35:32:73:0.479:2	0/1:0,16:33:16:1.00:2	0/1:1,158:32:159:0.994:2	0/1:1,77:32:78:0.987:2	0/1:0,137:33:137:1.00:2	0/1:100,55:32:155:0.355:2	0/1:2,153:32:155:0.987:2	0/1:0,127:33:127:1.00:2	0/1:94,71:32:165:0.430:2	0/1:1,188:32:189:0.995:2
chr11	64627427	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	64645871	rs1211284	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,12:32:53:0.226:2	0/1:21,12:30:33:0.364:2	0/1:0,15:31:15:1.00:2	0/1:0,93:31:93:1.00:2	0/1:4,50:31:54:0.926:2	0/1:1,69:31:70:0.986:2	0/1:41,23:31:64:0.359:2	0/1:0,70:31:70:1.00:2	0/1:0,61:32:61:1.00:2	0/1:55,25:31:80:0.313:2	0/1:0,51:31:51:1.00:2
chr11	64664292	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:28:80:0.050:2	./.	./.	./.	./.	./.
chr11	64666179	rs200851828	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,21:11:81:0.259:2	./.	0/1:54,15:15:70:0.217:2	./.	./.	0/1:63,9:15:72:0.125:2	0/1:56,10:17:66:0.152:2
chr11	64666182	rs201703555	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,8:23:41:0.200:2	./.	0/1:4,7:17:11:0.636:2	0/1:65,21:18:87:0.244:2	0/1:46,34:17:80:0.425:2	0/1:35,29:19:65:0.453:2	0/1:43,30:19:73:0.411:2	0/1:47,32:17:79:0.405:2	0/1:59,23:21:82:0.280:2	0/1:46,27:22:73:0.370:2	0/1:36,22:18:58:0.379:2
chr11	64668522	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	64670130	rs148478613	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,51:31:112:0.455:2	./.	./.	./.	./.	./.	./.
chr11	64677293	rs656195	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,4:29:4:1.00:2	./.	./.	0/1:0,2:31:2:1.00:2	./.	0/1:0,2:32:2:1.00:2	0/1:0,3:28:3:1.00:2	./.	0/1:0,3:27:3:1.00:2	0/1:0,4:25:4:1.00:2	./.
chr11	64680819	rs618006	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,12:30:24:0.500:2	0/1:15,12:32:27:0.444:2	./.	0/1:0,48:30:48:1.00:2	0/1:22,24:30:46:0.522:2	0/1:0,61:30:61:1.00:2	0/1:12,17:30:29:0.586:2	0/1:35,23:31:58:0.397:2	0/1:25,15:32:40:0.375:2	0/1:15,10:28:26:0.400:2	0/1:0,22:30:22:1.00:2
chr11	64684488	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:31:71:0.056:2	./.	./.	./.	./.	./.
chr11	64694280	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:31:109:0.037:2	./.
chr11	64715310	rs148208871	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,20:32:33:0.606:2	./.	./.	./.	./.	./.	./.
chr11	64789194	rs664226	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,8:33:24:0.333:2	0/1:0,24:31:24:1.00:2	0/1:0,32:32:32:1.00:2	0/1:10,7:30:17:0.412:2	0/1:0,24:30:24:1.00:2	0/1:0,17:32:17:1.00:2	0/1:9,4:30:13:0.308:2	0/1:0,5:30:5:1.00:2
chr11	64789222	rs61736632	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,8:31:20:0.400:2	0/1:4,16:31:20:0.800:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	64799998	rs534236	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,25:29:47:0.532:2	0/1:18,16:28:34:0.471:2	0/1:0,50:29:50:1.00:2	0/1:38,11:32:49:0.224:2	0/1:0,39:29:39:1.00:2	0/1:20,18:29:38:0.474:2	0/1:17,8:27:25:0.320:2	0/1:1,28:29:29:0.966:2
chr11	64802388	rs35982635	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,40:32:71:0.563:2	0/1:40,60:32:100:0.600:2	./.	./.	./.	0/1:36,45:33:81:0.556:2	./.	./.
chr11	64806270	rs542175	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,41:31:82:0.500:2	0/1:58,54:31:112:0.482:2	./.	./.	./.	0/1:33,62:33:95:0.653:2	./.	./.
chr11	64806272	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:33:94:0.043:2	./.	./.
chr11	64807189	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:32:108:0.037:2	./.
chr11	64807235	rs495820	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,38:32:106:0.362:2	0/1:86,51:31:137:0.372:2	./.	./.	./.	0/1:43,41:31:84:0.488:2	./.	./.
chr11	64809090	rs12271134	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr11	64811900	rs193165731	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,33:32:70:0.471:2	./.	./.	./.	./.	./.
chr11	64822073	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:33:59:0.068:2	./.	./.	./.
chr11	64846718	rs111891963	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,8:33:18:0.444:2	0/1:10,3:30:13:0.231:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	64854812	rs35251366	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,62:32:116:0.534:2	0/1:74,55:31:129:0.426:2	./.	./.	./.	0/1:86,58:33:144:0.403:2	./.	./.
chr11	64877197	rs61736623	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,20:32:44:0.455:2	0/1:16,12:32:28:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	64880090	rs4930284	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.
chr11	64880743	rs11539360	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,10:32:19:0.526:2	0/1:5,4:31:9:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	64882789	rs1129195	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,15:29:48:0.313:2	0/1:25,9:31:34:0.265:2	./.	0/1:27,31:31:58:0.534:2	0/1:3,67:30:70:0.957:2	0/1:0,53:30:53:1.00:2	./.	0/1:1,52:31:53:0.981:2	0/1:0,62:32:62:1.00:2	./.	0/1:39,34:31:73:0.466:2
chr11	64882868	rs201273391	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,7:18:46:0.152:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,8:20:55:0.145:2
chr11	64884052	rs1546532	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:32:44:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,68:31:68:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,63:31:63:1.00:2
chr11	64889034	rs13807	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,42:29:97:0.433:2	./.	./.	./.	./.	./.	./.
chr11	64889235	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:30:64:0.063:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	64898226	rs9971407	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,3:30:4:0.750:2	0/1:2,4:29:6:0.667:2	./.	0/1:3,3:30:6:0.500:2	0/1:1,3:31:4:0.750:2	./.	./.
chr11	64899736	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:32:147:0.027:2	./.	./.	./.	./.	./.
chr11	64900270	rs3825073	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,28:30:55:0.509:2	0/1:28,32:29:61:0.533:2	0/1:28,28:29:56:0.500:2	./.	0/1:32,17:29:49:0.347:2	0/1:21,19:31:40:0.475:2	./.	./.
chr11	64937683	rs17743381	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,17:30:38:0.447:2	0/1:30,16:31:46:0.348:2	0/1:27,19:30:46:0.413:2	./.	0/1:18,28:31:46:0.609:2	0/1:20,17:31:37:0.459:2	./.	./.
chr11	64950970	rs17583	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,61:31:62:0.984:2	0/1:1,59:32:60:0.983:2	0/1:0,20:31:20:1.00:2	0/1:42,46:31:88:0.523:2	./.	0/1:51,47:30:98:0.480:2	0/1:87,62:31:149:0.416:2	./.	./.	0/1:35,43:31:78:0.551:2	./.
chr11	64972286	rs10895991	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,27:33:58:0.466:2	./.	0/1:24,27:31:51:0.529:2	./.	./.	./.
chr11	64973187	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,5:30:141:0.035:2	./.	./.	./.	./.
chr11	64975745	rs17886317	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,42:31:78:0.538:2	0/1:36,35:31:71:0.493:2	./.	./.	./.	0/1:34,43:32:77:0.558:2	./.	./.
chr11	64981472	rs239258	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,5:24:18:0.278:2	0/1:0,18:27:18:1.00:2	0/1:12,9:27:21:0.429:2	0/1:11,5:28:16:0.313:2	0/1:0,12:27:12:1.00:2	0/1:0,22:28:22:1.00:2	0/1:1,6:25:7:0.857:2	0/1:4,5:29:9:0.556:2
chr11	64981522	rs11605576	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,6:29:6:1.00:2	0/1:0,8:30:8:1.00:2	./.	0/1:2,9:30:11:0.818:2	./.	./.	0/1:3,13:29:16:0.813:2	./.	./.	0/1:0,3:30:3:1.00:2	./.
chr11	64981587	rs11605632	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,6:28:6:1.00:2	0/1:0,8:27:8:1.00:2	./.	0/1:0,5:29:5:1.00:2	0/1:6,7:28:13:0.538:2	./.	0/1:4,6:27:10:0.600:2	./.	0/1:4,6:30:10:0.600:2	0/1:0,5:30:5:1.00:2	./.
chr11	64981837	rs12420456	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,28:30:31:0.903:2	0/1:0,19:31:19:1.00:2	0/1:0,8:32:8:1.00:2	0/1:27,38:30:66:0.585:2	./.	0/1:21,26:32:47:0.553:2	0/1:30,28:30:58:0.483:2	./.	./.	0/1:20,18:31:38:0.474:2	./.
chr11	64981853	rs239259	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,37:31:73:0.507:2	0/1:22,23:30:45:0.511:2	0/1:27,29:31:56:0.518:2	0/1:0,54:30:54:1.00:2	0/1:27,19:32:46:0.413:2	0/1:21,20:31:41:0.488:2	0/1:11,10:30:21:0.476:2
chr11	64981871	rs61742578	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,15:28:55:0.273:2	0/1:36,25:28:61:0.410:2	./.	./.	./.	0/1:17,19:28:36:0.528:2	./.	./.
chr11	64985069	rs200277146	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,30:28:67:0.448:2	./.
chr11	64988507	.	T	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:61,21:10:82:0.256:2	./.	./.	0/1:55,18:11:73:0.247:2	0/1:50,23:9:73:0.315:2	0/1:76,32:12:108:0.296:2	0/1:85,32:9:118:0.274:2	0/1:98,43:11:142:0.305:2	0/1:73,24:9:99:0.247:2	0/1:51,16:15:67:0.239:2	0/1:62,25:13:88:0.287:2
chr11	64988513	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,5:22:37:0.135:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	64988520	.	T	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,17:11:82:0.210:2	0/1:54,20:11:74:0.270:2	./.	./.	0/1:110,30:9:141:0.214:2	./.	./.	0/1:83,16:12:99:0.162:2
chr11	64988541	rs61746998	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,41:32:92:0.446:2	0/1:50,37:30:87:0.425:2	./.	0/1:138,4:31:142:0.028:2	./.	0/1:63,46:32:109:0.422:2	./.	./.
chr11	64990041	rs514076	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,41:32:42:0.976:2	0/1:0,21:33:21:1.00:2	0/1:0,3:32:3:1.00:2	0/1:30,21:33:51:0.412:2	0/1:36,32:33:68:0.471:2	0/1:0,48:33:48:1.00:2	0/1:5,61:32:67:0.924:2	0/1:0,67:32:67:1.00:2	0/1:34,24:33:58:0.414:2	0/1:0,45:33:45:1.00:2	0/1:23,25:33:48:0.521:2
chr11	65000719	rs2904979	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:28:43:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,10:29:10:1.00:2	0/1:1,51:28:52:0.981:2	0/1:1,52:28:53:0.981:2	0/1:0,51:29:51:1.00:2	0/1:0,52:29:52:1.00:2	0/1:0,79:29:79:1.00:2	0/1:0,62:29:62:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,35:28:35:1.00:2
chr11	65003962	rs61743983	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,21:33:79:0.266:2	0/1:60,41:32:101:0.406:2	./.	./.	./.	0/1:40,34:34:74:0.459:2	./.	./.
chr11	65003983	rs61742143	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,24:33:71:0.338:2	0/1:51,37:31:88:0.420:2	./.	./.	./.	0/1:37,31:33:68:0.456:2	./.	./.
chr11	65004291	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,30:31:76:0.395:2	./.	./.	./.	./.	./.	./.
chr11	65004301	rs2904982	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:31:36:1.00:2	0/1:0,18:32:18:1.00:2	0/1:4,4:25:8:0.500:2	0/1:30,30:31:60:0.500:2	0/1:0,64:31:64:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,33:31:33:1.00:2
chr11	65004309	rs564476	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,33:31:64:0.516:2	./.	0/1:24,32:33:56:0.571:2	./.	./.	./.
chr11	65034170	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:33:93:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	65048481	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:34:143:0.028:2	./.	./.
chr11	65049197	rs141608215	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,30:31:83:0.361:2	./.	./.	./.	./.	./.	./.
chr11	65061679	rs142790860	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,45:33:97:0.464:2	0/1:45,38:33:83:0.458:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	65064690	rs487989	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:35:2:1.00:2	0/1:0,53:31:53:1.00:2	0/1:29,26:32:56:0.473:2	./.	./.	./.	0/1:16,25:33:41:0.610:2	./.	./.
chr11	65089128	rs4149841	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,20:31:39:0.513:2	0/1:14,14:32:28:0.500:2	./.	./.	./.	0/1:27,27:31:54:0.500:2	0/1:44,49:31:93:0.527:2	./.	./.	./.	./.
chr11	65089792	rs525141	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:30:43:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,56:27:56:1.00:2	0/1:0,54:28:54:1.00:2	0/1:1,50:29:51:0.980:2	0/1:0,53:28:53:1.00:2	0/1:0,54:29:54:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,39:28:39:1.00:2	0/1:1,66:29:67:0.985:2
chr11	65124408	rs61732319	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,13:32:29:0.448:2	0/1:13,13:31:26:0.500:2	./.	./.	./.	./.	./.	./.
chr11	65144075	rs624307	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:29:65:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,4:28:4:1.00:2	0/1:0,98:29:98:1.00:2	0/1:0,132:29:132:1.00:2	0/1:1,97:29:98:0.990:2	0/1:0,124:29:124:1.00:2	0/1:1,107:28:108:0.991:2	0/1:0,101:30:101:1.00:2	0/1:0,80:29:80:1.00:2	0/1:0,61:29:61:1.00:2
chr11	65161129	rs2073800	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,22:31:22:1.00:2	0/1:0,9:32:9:1.00:2	./.	0/1:21,15:32:36:0.417:2	0/1:2,42:30:44:0.955:2	0/1:23,12:30:35:0.343:2	0/1:13,12:30:25:0.480:2	0/1:19,22:31:41:0.537:2	0/1:18,13:31:31:0.419:2	0/1:0,24:31:24:1.00:2	0/1:7,7:32:15:0.500:2
chr11	65164357	rs12417665	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:33:9:0.333:2	./.	0/1:1,3:31:4:0.750:2	./.	./.
chr11	65168281	rs2073801	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,39:31:82:0.476:2	./.	./.	./.	./.	./.	./.	./.
chr11	65168284	rs61740646	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,53:31:128:0.414:2	./.	./.	./.	./.	./.	./.
chr11	65211940	rs550894	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,35:31:83:0.422:2	./.	./.	./.	./.	./.	./.	./.
chr11	65211979	rs12803915	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,31:32:74:0.419:2	./.	0/1:33,53:33:86:0.616:2	./.	0/1:40,32:32:72:0.444:2
chr11	65293463	rs55662663	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,25:32:50:0.500:2	./.	./.
chr11	65293819	rs75169347	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,29:31:77:0.377:2	./.	./.	./.	./.	./.	./.
chr11	65319751	rs11545200	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,29:30:43:0.674:2	./.	./.	./.	./.	./.	./.	./.
chr11	65338944	rs2236684	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,7:29:19:0.368:2	./.	./.	./.	0/1:21,11:28:32:0.344:2
chr11	65347636	rs1194100	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:32:37:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,73:31:73:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,28:31:28:1.00:2
chr11	65347702	rs372148950	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,6:34:119:0.050:2	./.	./.	./.	./.	./.
chr11	65348725	rs79021529	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,21:31:34:0.618:2	0/1:16,4:28:20:0.200:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	65349037	rs74684453	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,13:31:54:0.241:2	./.	./.	./.	./.	./.	./.
chr11	65349063	rs3741380	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,43:33:44:0.977:2	0/1:0,23:31:23:1.00:2	./.	0/1:26,22:32:48:0.458:2	0/1:3,28:31:31:0.903:2	0/1:0,35:31:35:1.00:2	0/1:15,14:32:29:0.483:2	0/1:28,5:32:33:0.152:2	0/1:18,16:32:34:0.471:2	0/1:0,31:33:31:1.00:2	0/1:23,17:31:40:0.425:2
chr11	65349756	rs6591182	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:32:31:1.00:2	0/1:1,28:32:29:0.966:2	0/1:4,3:31:7:0.429:2	0/1:42,28:33:70:0.400:2	0/1:0,44:31:44:1.00:2	0/1:1,56:33:57:0.982:2	0/1:39,28:32:67:0.418:2	0/1:40,27:32:67:0.403:2	0/1:34,15:33:49:0.306:2	0/1:0,49:32:49:1.00:2	0/1:43,24:32:67:0.358:2
chr11	65349849	rs1194099	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:29:17:1.00:2	0/1:0,9:30:9:1.00:2	./.	0/1:0,18:31:18:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,14:28:15:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,5:28:5:1.00:2	0/1:0,15:29:15:1.00:2
chr11	65350448	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:31:60:0.067:2
chr11	65351074	rs10896018	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,18:32:36:0.500:2	./.	./.	./.	0/1:24,25:33:49:0.510:2	./.	./.	./.
chr11	65353024	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr11	65357617	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:31:149:0.027:2	./.	./.	./.	./.
chr11	65366939	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:32:45:0.089:2	./.
chr11	65380916	rs2004649	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,40:29:40:1.00:2	0/1:1,22:31:23:0.957:2	./.	0/1:8,24:30:33:0.750:2	./.	0/1:0,44:29:44:1.00:2	0/1:17,11:29:28:0.393:2	0/1:0,35:29:35:1.00:2	./.	0/1:17,14:26:31:0.452:2	0/1:6,12:29:18:0.667:2
chr11	65383896	rs7947140	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:33:42:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,60:33:60:1.00:2	0/1:1,73:33:74:0.986:2	0/1:0,45:32:45:1.00:2	0/1:0,74:33:74:1.00:2	0/1:0,67:33:67:1.00:2	0/1:0,43:34:43:1.00:2	0/1:0,59:33:59:1.00:2	0/1:0,51:33:51:1.00:2
chr11	65384727	rs12790427	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,31:32:83:0.373:2	./.	./.
chr11	65385009	rs199899945	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,57:30:145:0.393:2	0/1:37,49:30:86:0.570:2	./.	./.	./.	0/1:79,57:30:136:0.419:2	./.	./.	./.	./.	./.
chr11	65385606	rs1151489	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:30:20:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,22:30:22:1.00:2
chr11	65386206	rs1193851	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:21,12:32:33:0.364:2	0/1:7,8:33:15:0.533:2	./.	0/1:14,15:33:29:0.517:2	./.	0/1:14,8:33:22:0.364:2	./.	0/1:19,12:33:31:0.387:2
chr11	65387378	rs61744384	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:32:73:1.00:2	0/1:0,29:31:29:1.00:2	0/1:6,7:33:13:0.538:2	0/1:57,38:32:95:0.400:2	0/1:89,59:32:148:0.399:2	0/1:1,112:31:113:0.991:2	0/1:92,89:32:181:0.492:2	0/1:2,112:32:114:0.982:2	./.	0/1:0,58:32:58:1.00:2	0/1:45,31:32:76:0.408:2
chr11	65392695	rs1205259	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,30:30:62:0.484:2	0/1:53,43:31:96:0.448:2	./.	0/1:49,39:31:88:0.443:2	./.	0/1:30,32:32:62:0.516:2	./.	0/1:20,15:31:35:0.429:2
chr11	65404018	rs77200859	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,4:33:15:0.267:2	./.	./.	./.
chr11	65412467	rs2306364	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,63:32:65:0.969:2	0/1:0,42:32:42:1.00:2	./.	0/1:92,68:32:161:0.425:2	0/1:63,105:32:168:0.625:2	0/1:1,143:32:144:0.993:2	./.	0/1:87,67:33:154:0.435:2	0/1:43,69:33:112:0.616:2	0/1:2,101:32:103:0.981:2	0/1:48,44:32:92:0.478:2
chr11	65417434	rs746429	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,33:32:33:1.00:2	0/1:0,33:32:33:1.00:2	./.	0/1:29,29:30:58:0.500:2	./.	0/1:1,54:32:55:0.982:2	./.	0/1:27,35:32:62:0.565:2	./.	0/1:22,24:32:46:0.522:2	0/1:15,26:32:41:0.634:2
chr11	65422158	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:32:73:0.055:2	./.	./.	./.	./.
chr11	65480925	rs200103121	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,8:26:57:0.143:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	65486633	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:124,4:31:128:0.031:2	./.	./.	./.	./.	./.	./.
chr11	65546857	rs610037	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,4:32:14:0.286:2	0/1:56,58:33:114:0.509:2	0/1:68,56:31:124:0.452:2	0/1:57,56:32:113:0.496:2	0/1:56,48:32:104:0.462:2	./.	0/1:0,117:33:117:1.00:2	./.	0/1:41,30:32:71:0.423:2
chr11	65546918	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,49:31:90:0.544:2	./.	./.	./.
chr11	65547333	rs12146493	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,70:29:165:0.424:2	./.	0/1:76,81:30:157:0.516:2	./.	0/1:102,72:31:174:0.414:2	./.	0/1:66,30:30:96:0.313:2
chr11	65601560	rs17854357	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,18:33:36:0.500:2	./.	0/1:18,12:32:30:0.400:2
chr11	65622836	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,4:31:83:0.049:2	./.	./.	./.	./.	./.	./.	./.
chr11	65623519	rs4621	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,55:30:86:0.640:2	0/1:32,43:31:75:0.573:2	0/1:11,9:29:20:0.450:2	0/1:0,139:30:139:1.00:2	0/1:1,176:30:177:0.994:2	0/1:1,158:30:159:0.994:2	./.	0/1:84,94:31:179:0.528:2	0/1:57,71:31:128:0.555:2	0/1:76,58:31:134:0.433:2	0/1:69,52:31:121:0.430:2
chr11	65628334	rs13817	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,10:30:15:0.667:2	0/1:3,4:32:7:0.571:2	0/1:0,2:31:2:1.00:2	0/1:0,33:29:33:1.00:2	0/1:1,33:27:34:0.971:2	0/1:0,31:28:31:1.00:2	./.	0/1:6,11:30:17:0.647:2	0/1:5,14:27:19:0.737:2	0/1:6,5:27:11:0.455:2	0/1:2,8:25:10:0.800:2
chr11	65629932	rs659857	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,22:31:49:0.449:2	0/1:25,15:31:40:0.375:2	0/1:2,4:33:6:0.667:2	0/1:0,65:32:65:1.00:2	0/1:2,47:31:49:0.959:2	0/1:0,52:32:52:1.00:2	./.	0/1:67,33:32:100:0.330:2	0/1:63,27:33:90:0.300:2	0/1:44,26:32:70:0.371:2	0/1:69,45:32:114:0.395:2
chr11	65629934	rs545500	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,22:32:49:0.449:2	0/1:23,15:32:38:0.395:2	0/1:2,4:33:6:0.667:2	0/1:0,65:31:65:1.00:2	0/1:2,46:30:49:0.958:2	0/1:0,52:31:52:1.00:2	./.	0/1:64,34:32:99:0.347:2	0/1:63,27:33:90:0.300:2	0/1:40,26:30:66:0.394:2	0/1:69,45:30:114:0.395:2
chr11	65631167	rs648732	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,29:32:71:0.408:2	0/1:21,22:32:43:0.512:2	0/1:13,3:32:16:0.188:2	0/1:0,91:32:91:1.00:2	0/1:2,122:32:124:0.984:2	0/1:0,106:31:106:1.00:2	./.	0/1:82,64:32:147:0.438:2	0/1:66,57:33:123:0.463:2	0/1:49,42:31:91:0.462:2	0/1:61,44:32:105:0.419:2
chr11	65631361	rs34891773	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,18:31:37:0.486:2	./.
chr11	65631973	rs630303	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,43:30:80:0.538:2	0/1:20,28:32:48:0.583:2	0/1:7,5:26:12:0.417:2	0/1:2,125:31:127:0.984:2	0/1:3,133:31:136:0.978:2	0/1:0,98:31:98:1.00:2	./.	0/1:79,67:32:146:0.459:2	0/1:66,48:33:114:0.421:2	0/1:26,41:31:67:0.612:2	0/1:51,50:32:102:0.495:2
chr11	65632262	rs558114	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,13:31:34:0.382:2	0/1:13,9:32:22:0.409:2	./.	0/1:0,21:30:21:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,47:31:47:1.00:2	./.	0/1:23,15:30:38:0.395:2	0/1:39,22:32:61:0.361:2	0/1:31,14:31:45:0.311:2	0/1:28,12:27:40:0.300:2
chr11	65636053	rs601314	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:28:32:1.00:2	0/1:0,26:27:26:1.00:2	0/1:0,19:28:19:1.00:2	0/1:0,69:28:69:1.00:2	0/1:0,89:27:89:1.00:2	0/1:0,82:28:82:1.00:2	0/1:0,94:28:94:1.00:2	0/1:0,84:27:84:1.00:2	0/1:0,56:28:56:1.00:2	0/1:0,46:27:46:1.00:2	0/1:0,32:28:32:1.00:2
chr11	65638719	rs633800	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,38:31:84:0.452:2	0/1:32,21:31:53:0.396:2	0/1:18,3:32:21:0.143:2	0/1:0,149:29:150:1.00:2	0/1:4,157:29:162:0.975:2	0/1:0,163:30:165:1.00:2	./.	0/1:92,92:29:185:0.500:2	0/1:50,50:31:100:0.500:2	0/1:66,50:30:116:0.431:2	0/1:61,50:29:111:0.450:2
chr11	65647407	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:31:112:0.036:2
chr11	65649774	rs604630	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,51:31:51:1.00:2	0/1:0,31:30:31:1.00:2	./.	0/1:0,74:29:74:1.00:2	0/1:0,53:29:53:1.00:2	0/1:1,50:28:51:0.980:2	0/1:0,84:30:84:1.00:2	0/1:1,81:29:82:0.988:2	0/1:0,77:31:77:1.00:2	0/1:0,49:29:49:1.00:2	0/1:0,71:29:71:1.00:2
chr11	65649984	rs687672	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:29:50:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,84:30:84:1.00:2	0/1:0,108:30:109:1.00:2	0/1:0,108:29:109:1.00:2	0/1:5,87:30:92:0.946:2	0/1:5,105:30:110:0.955:2	0/1:45,33:31:78:0.423:2	0/1:50,37:29:87:0.425:2	0/1:37,39:30:76:0.513:2
chr11	65650883	rs35841983	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,14:30:23:0.609:2	./.
chr11	65660720	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:28:68:0.059:2	./.	./.	./.
chr11	65664346	rs637571	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:10,14:33:24:0.583:2	0/1:13,13:32:26:0.500:2	./.	./.	./.	./.	0/1:1,35:32:36:0.972:2	0/1:17,23:32:40:0.575:2	0/1:21,10:33:32:0.323:2	./.	0/1:26,14:31:40:0.350:2
chr11	65684929	rs9667389	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:32:31:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,44:32:44:1.00:2	0/1:1,18:33:19:0.947:2	0/1:0,25:32:25:1.00:2	0/1:0,29:32:29:1.00:2
chr11	65685225	rs7947504	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:29:22:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,18:28:18:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,19:28:19:1.00:2	0/1:20,14:28:34:0.412:2	0/1:0,27:29:27:1.00:2	0/1:0,15:27:15:1.00:2	0/1:0,13:28:13:1.00:2
chr11	65713207	rs9795469	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:28:59:1.00:2	0/1:0,27:28:27:1.00:2	0/1:0,16:28:16:1.00:2	0/1:1,54:29:55:0.982:2	0/1:0,88:28:88:1.00:2	0/1:0,68:29:68:1.00:2	0/1:0,78:29:78:1.00:2	0/1:0,93:29:93:1.00:2	0/1:0,61:30:61:1.00:2	0/1:0,48:29:48:1.00:2	0/1:0,32:27:32:1.00:2
chr11	65714925	rs565921	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,15:31:25:0.600:2	0/1:12,15:31:27:0.556:2	./.	./.	./.
chr11	65727301	rs491973	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:19,16:32:35:0.457:2	0/1:20,10:32:30:0.333:2	0/1:9,4:35:13:0.308:2	./.	./.	./.	0/1:24,27:33:51:0.529:2	./.	0/1:42,26:32:68:0.382:2	./.	0/1:37,35:33:72:0.486:2
chr11	65727339	rs67530871	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,20:31:48:0.417:2	0/1:33,39:30:72:0.542:2	./.	./.	./.
chr11	65727341	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:32:38:0.105:2	./.	./.	./.	./.	./.
chr11	65732651	rs550435	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:15,21:31:36:0.583:2	0/1:11,10:32:21:0.476:2	0/1:1,4:31:5:0.800:2	./.	./.	./.	0/1:22,21:32:43:0.488:2	./.	0/1:24,25:31:49:0.510:2	./.	0/1:20,18:33:38:0.474:2
chr11	65733393	rs688862	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,30:33:61:0.492:2	0/1:18,14:32:32:0.438:2	0/1:12,4:33:16:0.250:2	0/1:3,86:33:89:0.966:2	0/1:1,76:32:77:0.987:2	0/1:0,66:32:66:1.00:2	./.	0/1:49,42:33:91:0.462:2	0/1:49,45:33:94:0.479:2	0/1:0,50:33:50:1.00:2	0/1:45,41:33:86:0.477:2
chr11	65735005	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:32:38:0.105:2	./.	./.	./.	./.
chr11	65735174	rs660118	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:23,12:32:35:0.343:2	0/1:13,8:32:21:0.381:2	0/1:5,5:29:10:0.500:2	./.	./.	./.	0/1:20,11:32:31:0.355:2	./.	0/1:25,18:32:43:0.419:2	./.	0/1:13,7:31:20:0.350:2
chr11	65735205	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:31:82:0.049:2	./.
chr11	65746136	rs11545221	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,57:30:114:0.500:2	0/1:104,80:28:185:0.435:2	./.	./.	./.
chr11	65766092	rs2276017	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,30:31:89:0.337:2	0/1:74,43:30:117:0.368:2	./.	./.	./.
chr11	65787666	rs3829937	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,32:32:76:0.421:2	0/1:31,18:32:49:0.367:2	0/1:42,31:32:73:0.425:2	./.	./.	0/1:34,19:34:53:0.358:2	0/1:19,20:33:39:0.513:2	./.
chr11	65788072	rs3814747	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:32:69:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,78:33:78:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,49:33:49:1.00:2
chr11	65790527	rs2845570	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,14:30:28:0.500:2	0/1:18,17:33:35:0.486:2	0/1:0,6:31:6:1.00:2	0/1:29,34:32:63:0.540:2	0/1:22,25:32:47:0.532:2	0/1:41,32:32:73:0.438:2	0/1:26,20:32:46:0.435:2	0/1:27,23:33:50:0.460:2	0/1:33,25:32:58:0.431:2	0/1:19,16:32:35:0.457:2	0/1:0,63:33:63:1.00:2
chr11	65792703	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr11	65793454	rs1203998	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:33,36:33:69:0.522:2	0/1:27,17:32:44:0.386:2	./.	./.	./.	./.	0/1:64,52:33:116:0.448:2	0/1:77,47:32:124:0.379:2	./.	./.	./.
chr11	65793797	rs1893316	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,43:31:79:0.544:2	0/1:28,14:31:42:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	65810612	rs35285455	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,8:32:9:0.889:2	./.	./.	./.	./.	./.	./.
chr11	65810749	rs7937692	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,5:33:5:1.00:2	./.	./.	0/1:0,8:32:8:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,13:34:13:1.00:2	0/1:0,9:30:9:1.00:2	./.
chr11	65826704	rs1049872	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,23:32:60:0.383:2	0/1:14,10:33:24:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	65827327	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,5:30:180:0.028:2	./.	./.	./.	./.
chr11	65835458	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:31:99:0.040:2	./.	./.	./.	./.
chr11	65998114	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,42:31:68:0.618:2	./.	./.	./.	./.	./.
chr11	66006323	rs476551	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,42:31:97:0.433:2	0/1:56,53:31:109:0.486:2	./.	./.	0/1:62,47:32:109:0.431:2	0/1:58,42:32:100:0.420:2	0/1:72,54:32:126:0.429:2
chr11	66031660	rs1151539	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,11:30:28:0.393:2	0/1:1,13:32:14:0.929:2	0/1:0,3:31:3:1.00:2	0/1:25,21:29:46:0.457:2	./.	./.	./.	0/1:25,21:30:46:0.457:2	./.	./.	0/1:22,25:31:47:0.532:2
chr11	66033218	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:159,4:32:163:0.025:2	./.	./.	./.	./.	./.	./.
chr11	66033423	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,11:17:93:0.118:2	./.	./.	./.	./.	./.	./.	./.
chr11	66033430	rs2276036	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,31:31:68:0.470:2	0/1:47,65:30:114:0.580:2	./.	./.	0/1:39,57:30:96:0.594:2	0/1:27,58:30:86:0.682:2	0/1:20,38:30:58:0.655:2
chr11	66055030	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	66055685	rs11544832	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,38:31:88:0.432:2	./.	./.	0/1:34,29:32:63:0.460:2
chr11	66056457	rs7945723	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:34:2:1.00:2	0/1:2,7:31:9:0.778:2	0/1:2,3:31:5:0.600:2	./.	./.	0/1:0,4:33:4:1.00:2	./.	./.
chr11	66059493	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2
chr11	66062023	rs34837704	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,13:31:22:0.591:2	./.	./.	./.	./.	0/1:68,66:31:134:0.493:2	./.	./.	0/1:23,23:31:46:0.500:2
chr11	66062610	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.
chr11	66083129	rs3741367	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:25:6:1.00:2	./.	0/1:53,52:26:105:0.495:2	./.	./.	0/1:77,35:28:112:0.313:2	./.	0/1:37,31:27:68:0.456:2	0/1:35,21:27:56:0.375:2
chr11	66083591	rs150281243	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,47:29:82:0.573:2	./.	./.	./.	./.	./.	./.
chr11	66083782	rs3741368	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.	0/1:22,28:31:51:0.560:2	./.	./.	0/1:30,32:30:62:0.516:2	./.	0/1:19,16:31:35:0.457:2	0/1:13,8:31:21:0.381:2
chr11	66099987	rs1784029	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,31:32:64:0.484:2	0/1:16,13:33:29:0.448:2	0/1:0,10:31:10:1.00:2	0/1:29,28:32:57:0.491:2	0/1:30,24:31:54:0.444:2	0/1:19,20:32:39:0.513:2	0/1:30,9:31:39:0.231:2	0/1:2,66:31:68:0.971:2	0/1:24,17:33:41:0.415:2	0/1:22,10:29:32:0.313:2	0/1:16,19:31:35:0.543:2
chr11	66100152	rs1784030	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:32:30:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,36:34:36:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,38:33:38:1.00:2
chr11	66101654	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	66102557	rs117873455	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,52:32:90:0.578:2	./.	./.	0/1:25,25:33:50:0.500:2
chr11	66103311	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:32:58:0.069:2	./.
chr11	66103323	.	T	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,9:20:64:0.141:2	0/1:83,10:19:93:0.108:2	0/1:44,7:18:51:0.137:2	./.	0/1:64,8:24:73:0.111:2	./.	0/1:36,7:20:43:0.163:2	./.
chr11	66103481	rs140145986	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,22:30:39:0.564:2	./.	./.	0/1:7,4:31:11:0.364:2
chr11	66105194	rs1052566	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:22,16:30:38:0.421:2	0/1:9,11:30:20:0.550:2	./.	0/1:20,19:30:39:0.487:2	./.	0/1:28,22:28:50:0.440:2	0/1:13,17:30:30:0.567:2	0/1:31,19:31:50:0.380:2	0/1:19,17:31:36:0.472:2	./.	./.
chr11	66106261	rs143489952	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,51:31:108:0.472:2	./.	./.	./.	./.	./.	0/1:61,45:30:107:0.425:2	./.
chr11	66107674	rs1784035	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:28:32:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,49:30:49:1.00:2	0/1:1,55:30:57:0.982:2	0/1:0,44:29:44:1.00:2	0/1:2,48:30:50:0.960:2	0/1:0,39:29:39:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,34:29:34:1.00:2
chr11	66109033	rs11537993	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,10:33:16:0.625:2	./.	0/1:74,82:33:156:0.526:2	./.	./.	0/1:83,64:32:147:0.435:2	./.	0/1:44,41:33:85:0.482:2	0/1:44,37:31:81:0.457:2
chr11	66114900	rs11537930	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,29:31:61:0.475:2	./.	./.	./.	./.	./.	0/1:22,8:32:30:0.267:2	./.
chr11	66188761	rs77600363	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,82:30:192:0.427:2	./.	0/1:65,67:31:134:0.508:2	0/1:73,53:30:126:0.421:2
chr11	66204624	rs145756140	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,48:32:113:0.425:2	./.	./.	./.	./.	./.	./.
chr11	66206169	rs11110	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,7:29:16:0.467:2	./.	./.	./.	0/1:7,6:32:13:0.462:2	0/1:10,7:27:17:0.412:2	0/1:11,6:32:17:0.353:2
chr11	66240882	rs2277302	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:26,24:29:50:0.480:2	0/1:12,11:30:23:0.478:2	./.	0/1:23,26:29:49:0.531:2	./.	./.	./.	0/1:35,25:29:60:0.417:2	./.	./.	0/1:30,18:26:48:0.375:2
chr11	66254085	rs11550299	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:39,31:29:70:0.443:2	0/1:30,32:32:62:0.516:2	./.	0/1:55,61:28:116:0.526:2	./.	./.	./.	0/1:63,57:29:120:0.475:2	./.	./.	0/1:67,60:28:127:0.472:2
chr11	66254090	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:31:132:0.030:2
chr11	66254142	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,4:30:84:0.048:2	./.	./.	./.	./.	./.	./.
chr11	66272142	rs1671063	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,19:29:31:0.613:2	0/1:17,8:28:25:0.320:2	./.	0/1:0,51:29:51:1.00:2	0/1:46,32:30:78:0.410:2	./.	./.	0/1:29,25:28:54:0.463:2	0/1:27,16:28:43:0.372:2	0/1:0,34:28:34:1.00:2	0/1:0,34:28:34:1.00:2
chr11	66272237	rs2305535	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:12,21:30:33:0.636:2	0/1:18,12:30:30:0.400:2	./.	0/1:27,36:30:63:0.571:2	./.	./.	./.	0/1:36,27:30:63:0.429:2	./.	./.	0/1:23,20:29:43:0.465:2
chr11	66282095	rs2298806	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:4,11:29:15:0.733:2	./.	./.	0/1:7,4:31:11:0.364:2	./.	./.	./.	0/1:6,10:29:16:0.625:2	./.	./.	0/1:16,6:26:22:0.273:2
chr11	66297363	rs3816492	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:9,11:30:21:0.550:2	0/1:13,6:31:19:0.316:2	./.	0/1:12,26:31:38:0.684:2	./.	./.	./.	0/1:18,17:30:35:0.486:2	./.	./.	0/1:9,12:31:21:0.571:2
chr11	66299515	rs8432	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,17:32:32:0.531:2	0/1:12,19:32:31:0.613:2	./.	0/1:0,46:32:46:1.00:2	0/1:44,21:30:65:0.323:2	./.	./.	0/1:29,39:33:68:0.574:2	0/1:27,22:33:49:0.449:2	0/1:0,49:31:49:1.00:2	0/1:0,30:32:30:1.00:2
chr11	66307264	rs141457375	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,40:31:104:0.385:2	./.	./.	./.	./.
chr11	66313203	rs2305534	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:3,4:30:7:0.571:2	./.	./.	./.	./.	./.	./.	0/1:10,4:31:15:0.286:2	./.	./.	./.
chr11	66313220	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr11	66323670	rs139548317	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:33:174:0.023:2	./.	./.	./.	./.
chr11	66327673	rs1671064	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,28:33:52:0.549:2	0/1:13,14:32:27:0.519:2	./.	0/1:0,57:32:57:1.00:2	0/1:49,38:32:87:0.437:2	./.	./.	./.	0/1:28,30:33:58:0.517:2	0/1:0,53:32:53:1.00:2	./.
chr11	66328055	rs2229455	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,18:27:56:0.321:2	./.	./.	./.	0/1:33,24:26:57:0.421:2	./.	./.	0/1:19,22:29:41:0.537:2
chr11	66328095	rs1815739	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,19:31:54:0.352:2	0/1:12,12:30:24:0.500:2	./.	0/1:2,87:31:89:0.978:2	0/1:91,73:30:164:0.445:2	./.	./.	0/1:46,48:31:94:0.511:2	0/1:51,40:31:91:0.440:2	0/1:0,61:31:61:1.00:2	0/1:24,26:30:50:0.520:2
chr11	66328198	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,57:33:103:0.553:2	./.
chr11	66328719	rs618838	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,16:32:42:0.381:2	0/1:15,14:30:29:0.483:2	./.	0/1:2,51:31:53:0.962:2	0/1:64,28:31:92:0.304:2	./.	./.	0/1:57,27:29:84:0.321:2	0/1:29,31:32:60:0.517:2	0/1:0,47:30:47:1.00:2	0/1:30,16:30:47:0.348:2
chr11	66328741	rs2229456	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,31:31:70:0.443:2	./.	./.	./.	0/1:66,34:29:100:0.340:2	./.	./.	0/1:35,15:30:50:0.300:2
chr11	66329639	rs77239910	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,36:32:90:0.400:2	./.	./.	./.	0/1:59,48:31:107:0.449:2	./.	./.	0/1:41,47:32:88:0.534:2
chr11	66329732	rs540874	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,42:30:69:0.609:2	0/1:28,20:30:48:0.417:2	./.	0/1:2,93:30:95:0.979:2	0/1:62,64:29:126:0.508:2	./.	./.	0/1:62,54:29:116:0.466:2	0/1:54,41:31:95:0.432:2	0/1:0,81:30:81:1.00:2	0/1:53,38:30:91:0.418:2
chr11	66331458	rs572846	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,9:30:35:0.257:2	0/1:8,13:29:21:0.619:2	./.	0/1:0,29:29:29:1.00:2	0/1:26,20:29:46:0.435:2	./.	./.	0/1:24,19:28:43:0.442:2	0/1:22,19:30:41:0.463:2	0/1:0,42:29:42:1.00:2	0/1:30,12:29:42:0.286:2
chr11	66333598	rs545009	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,28:32:55:0.509:2	0/1:8,15:32:23:0.652:2	./.	0/1:1,48:31:49:0.980:2	0/1:37,15:31:52:0.288:2	./.	./.	0/1:37,32:31:69:0.464:2	0/1:41,32:32:73:0.438:2	0/1:0,43:31:43:1.00:2	0/1:23,26:32:49:0.531:2
chr11	66333807	rs143313688	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,38:33:79:0.481:2	0/1:26,29:33:55:0.527:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	66335541	rs200958879	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,4:22:17:0.235:2	./.
chr11	66335548	rs1127894	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:6,6:29:12:0.500:2	./.	0/1:0,14:31:14:1.00:2	0/1:16,6:28:23:0.273:2	./.	./.	0/1:30,10:30:43:0.250:2	0/1:23,8:22:31:0.258:2	0/1:0,16:26:16:1.00:2	./.
chr11	66358126	rs486584	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:28,24:31:52:0.462:2	0/1:13,19:31:32:0.594:2	0/1:0,3:30:3:1.00:2	./.	0/1:31,24:29:55:0.436:2	0/1:0,38:30:38:1.00:2	0/1:0,38:28:38:1.00:2	0/1:23,43:29:66:0.652:2	0/1:45,27:30:72:0.375:2	./.	0/1:45,36:29:81:0.444:2
chr11	66360712	rs373408934	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:33:75:0.053:2	./.	./.	./.	./.	./.
chr11	66373305	rs1127145	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,18:30:52:0.346:2	./.	./.	./.	0/1:36,48:30:84:0.571:2	./.	./.	0/1:26,21:30:47:0.447:2
chr11	66385991	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:31:140:0.029:2	./.	./.	./.	./.
chr11	66391354	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:196,4:32:200:0.020:2	./.	./.	./.	./.	./.	./.
chr11	66392880	rs11550057	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,34:32:68:0.500:2	./.	./.	./.	0/1:61,39:31:100:0.390:2	./.	./.	0/1:25,22:32:47:0.468:2
chr11	66407209	rs113222915	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:125,4:31:129:0.031:2	./.	./.	./.	./.	./.	./.
chr11	66407578	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:31:106:0.038:2
chr11	66407594	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,4:32:69:0.058:2	./.	./.	./.	./.	./.	./.
chr11	66436334	rs148209474	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,24:30:49:0.490:2	0/1:23,17:31:40:0.425:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	66444206	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:196,4:33:200:0.020:2	./.	./.	./.	./.
chr11	66444524	rs144151416	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,3:34:65:0.046:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	66456135	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,22:30:40:0.550:2	./.
chr11	66457681	rs35532855	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,6:29:14:0.429:2	./.	./.	./.	./.	./.	./.
chr11	66458980	rs623022	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,8:30:29:0.276:2	0/1:8,11:32:19:0.579:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	66460527	rs639938	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,27:31:68:0.397:2	0/1:29,24:32:53:0.453:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	66468469	rs506028	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	66472274	rs4930388	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.
chr11	66475624	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:30:98:0.041:2	./.	./.	./.	./.	./.
chr11	66481633	rs34775878	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:80,49:32:129:0.380:2	0/1:44,25:32:69:0.362:2	./.	./.	0/1:100,55:31:155:0.355:2	./.	./.	./.	./.	./.	0/1:73,56:32:129:0.434:2
chr11	66488595	rs142080780	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,48:28:149:0.322:2	./.	./.	./.	./.	./.
chr11	66583571	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:29:83:0.048:2	./.	./.	./.	./.	./.
chr11	66589235	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,4:29:34:0.118:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	66610418	rs200048907	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	66610645	rs7570	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,9:33:38:0.237:2	./.	./.	./.	0/1:37,16:30:53:0.302:2	0/1:20,6:29:26:0.231:2	./.
chr11	66618340	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,31:32:55:0.564:2	./.
chr11	66625698	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,19:29:37:0.514:2	./.	./.	./.	./.
chr11	66626234	rs3741194	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.	./.	./.	0/1:6,4:31:10:0.400:2	./.	./.
chr11	66743098	rs118060724	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,7:33:10:0.700:2	0/1:5,3:31:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	66797605	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:34:79:0.051:2	./.	./.	./.	./.
chr11	66802252	rs151301486	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,16:32:49:0.327:2	./.	./.
chr11	66834252	rs2282502	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,7:32:8:0.875:2	./.	0/1:52,43:31:95:0.453:2	./.	0/1:0,115:31:115:1.00:2	./.	0/1:0,71:32:71:1.00:2	./.	0/1:32,35:32:67:0.522:2
chr11	66837965	rs4930409	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,29:31:29:1.00:2	0/1:0,9:28:9:1.00:2	./.	0/1:0,42:30:42:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,42:30:42:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,45:30:45:1.00:2
chr11	66995603	rs3741189	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:33:52:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,57:33:57:1.00:2	0/1:1,65:33:66:0.985:2	0/1:0,51:33:51:1.00:2	0/1:0,97:32:97:1.00:2	0/1:1,83:34:84:0.988:2	0/1:0,51:33:51:1.00:2	0/1:0,118:33:118:1.00:2
chr11	66999278	rs373144982	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:30:64:0.063:2	./.	./.	./.	./.	./.
chr11	67034266	rs2228418	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,8:31:8:1.00:2	0/1:0,4:31:4:1.00:2	./.	0/1:0,13:29:13:1.00:2	0/1:0,12:28:12:1.00:2	0/1:8,7:29:15:0.467:2	0/1:0,5:28:5:1.00:2	0/1:0,32:29:32:1.00:2	0/1:0,17:29:17:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,10:31:10:1.00:2
chr11	67044800	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,18:32:44:0.409:2	./.	./.
chr11	67049779	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:32:116:0.034:2	./.	./.	./.
chr11	67049984	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:115,4:32:120:0.034:2	./.	./.	./.	./.	./.	./.
chr11	67050292	rs2071007	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:31:22:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,31:30:31:1.00:2	0/1:12,23:30:35:0.657:2	0/1:0,45:31:45:1.00:2	0/1:0,34:31:34:1.00:2	0/1:1,30:31:31:0.968:2	0/1:0,18:31:18:1.00:2	0/1:0,27:32:27:1.00:2
chr11	67068859	rs2298815	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:30:30:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,3:29:3:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,44:29:44:1.00:2	0/1:0,40:28:40:1.00:2	0/1:0,34:26:35:1.00:2	0/1:0,45:28:45:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,32:28:32:1.00:2	0/1:0,34:28:34:1.00:2
chr11	67069011	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:31:81:0.049:2	./.	./.	./.	./.	./.
chr11	67071584	rs4244822	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,6:30:6:1.00:2	0/1:0,7:31:7:1.00:2	./.	0/1:0,20:27:20:1.00:2	0/1:0,14:25:14:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,19:27:19:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,12:29:12:1.00:2	0/1:0,12:26:12:1.00:2
chr11	67075102	rs199920598	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,12:17:96:0.125:2	./.	./.	./.	./.	./.
chr11	67075131	rs57238619	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,57:32:128:0.445:2	./.	./.	./.	./.	./.
chr11	67076953	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:31:107:0.037:2	./.	./.	./.
chr11	67079076	rs78252461	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,41:31:109:0.376:2	./.	./.	./.	./.	./.	./.	./.
chr11	67164788	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,15:30:15:1.00:2	./.	./.	./.	./.	./.	./.
chr11	67171736	rs2514256	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,16:31:32:0.500:2	./.	./.	./.	./.	./.
chr11	67173422	rs78320186	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,50:32:111:0.450:2	./.	./.	./.	./.	./.	./.	./.
chr11	67174472	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:32:90:0.044:2	./.	./.
chr11	67176898	rs11227788	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,16:30:31:0.516:2	./.	./.	./.	./.	./.
chr11	67186623	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,7:15:41:0.171:2	./.	./.	./.	./.	./.
chr11	67186995	rs41302427	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,16:30:22:0.727:2	./.	./.	./.	./.	./.
chr11	67191449	rs1790747	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,43:32:104:0.417:2	./.	./.	./.	./.	./.
chr11	67200812	rs55987642	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,13:29:19:0.684:2	./.	./.	./.	./.	./.
chr11	67200819	rs4930427	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,15:30:45:0.333:2	./.	0/1:0,24:29:24:1.00:2	./.	0/1:18,17:29:35:0.486:2	0/1:11,19:31:30:0.633:2	./.	0/1:15,17:31:32:0.531:2
chr11	67202156	rs13859	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:31:7:0.429:2	0/1:34,20:29:55:0.370:2	./.	0/1:0,75:30:76:1.00:2	./.	0/1:23,24:29:47:0.511:2	0/1:29,23:30:52:0.442:2	./.	0/1:17,17:30:34:0.500:2
chr11	67203442	rs60969594	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,77:32:188:0.410:2	./.	./.	./.	./.	./.
chr11	67206247	rs34026289	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,5:29:17:0.313:2	./.	./.	./.	./.	./.	./.
chr11	67220163	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:157,4:33:161:0.025:2	./.	./.	./.	./.	./.	./.
chr11	67223902	rs200503985	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	67225937	rs34573687	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,16:30:44:0.364:2	./.	./.	./.	./.	./.	./.
chr11	67226097	rs72934713	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,19:30:41:0.463:2	./.	./.	./.	./.	./.
chr11	67236492	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.
chr11	67236529	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2
chr11	67257823	rs641081	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:31:29:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,32:32:32:1.00:2
chr11	67258391	rs4930199	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,32:28:32:1.00:2	0/1:0,24:28:24:1.00:2	./.	0/1:0,37:30:37:1.00:2	0/1:0,41:29:41:1.00:2	0/1:0,36:28:36:1.00:2	0/1:0,17:28:17:1.00:2	0/1:0,24:27:24:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,26:28:26:1.00:2
chr11	67259712	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:30:52:0.077:2	./.	./.	./.	./.	./.
chr11	67261450	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:33:147:0.027:2	./.	./.	./.
chr11	67262411	rs144939807	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,28:32:54:0.519:2	./.	./.
chr11	67263767	rs618633	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:27:19:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,28:27:28:1.00:2	0/1:0,25:26:25:1.00:2	0/1:0,21:26:21:1.00:2	0/1:0,25:25:25:1.00:2	0/1:0,28:28:28:1.00:2	0/1:0,24:26:24:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,21:27:21:1.00:2
chr11	67265444	rs78790481	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:32:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	67275107	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,6:33:49:0.122:2	./.
chr11	67288594	rs2276118	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:33:46:1.00:2	0/1:0,14:32:14:1.00:2	0/1:4,3:32:7:0.429:2	0/1:33,35:30:68:0.515:2	0/1:33,29:32:62:0.468:2	0/1:31,41:32:72:0.569:2	0/1:0,64:32:64:1.00:2	0/1:38,48:32:86:0.558:2	0/1:0,57:33:57:1.00:2	0/1:0,44:33:44:1.00:2	0/1:27,29:31:56:0.518:2
chr11	67351585	rs4147581	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,11:33:38:0.289:2	0/1:10,7:33:17:0.412:2	0/1:6,3:32:9:0.333:2	0/1:36,14:32:50:0.280:2	0/1:33,12:31:45:0.267:2	./.	0/1:0,32:31:32:1.00:2	0/1:36,31:32:67:0.463:2	0/1:1,37:33:38:0.974:2	./.	0/1:25,8:30:33:0.242:2
chr11	67351964	rs192307201	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,69:31:126:0.548:2	./.	./.	./.	./.	./.
chr11	67352689	rs1695	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,19:28:50:0.380:2	0/1:21,24:28:45:0.533:2	./.	0/1:43,23:30:66:0.348:2	0/1:65,73:29:138:0.529:2	./.	./.	0/1:64,51:30:115:0.443:2	./.	0/1:41,52:27:93:0.559:2	0/1:25,41:29:66:0.621:2
chr11	67353579	rs1138272	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,30:30:83:0.361:2	./.	./.	./.	0/1:35,49:29:85:0.583:2	./.	./.	0/1:35,31:28:66:0.470:2
chr11	67353970	rs4891	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:22,21:27:43:0.488:2	0/1:12,10:28:22:0.455:2	./.	0/1:49,21:28:70:0.300:2	./.	0/1:38,30:31:68:0.441:2	./.	0/1:39,26:30:65:0.400:2	./.	0/1:25,17:29:42:0.405:2	0/1:34,25:30:59:0.424:2
chr11	67376922	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	67399173	rs146672518	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,15:33:28:0.536:2	0/1:3,12:30:15:0.800:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	67401721	rs151337371	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,13:32:44:0.295:2	0/1:18,13:31:31:0.419:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	67402362	rs3758938	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,25:29:53:0.472:2	0/1:19,8:28:27:0.296:2	0/1:3,7:30:10:0.700:2	0/1:36,28:30:64:0.438:2	./.	./.	./.	0/1:32,48:28:80:0.600:2	./.	0/1:25,24:27:49:0.490:2	0/1:17,14:28:31:0.452:2
chr11	67412771	rs17148450	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:28:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	67414492	rs948445	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:33:4:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.	0/1:0,13:33:13:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,6:33:6:1.00:2
chr11	67430698	rs3741172	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,80:26:80:1.00:2	0/1:35,37:24:72:0.514:2	./.	./.	./.	./.	0/1:19,24:23:43:0.558:2	./.
chr11	67430762	rs1551886	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,102:30:102:1.00:2	0/1:0,52:30:52:1.00:2	0/1:2,22:29:24:0.917:2	./.	0/1:91,70:29:161:0.435:2	0/1:1,143:30:144:0.993:2	0/1:0,167:30:167:1.00:2	0/1:4,183:30:187:0.979:2	0/1:0,144:30:144:1.00:2	0/1:57,81:29:138:0.587:2	0/1:0,104:29:104:1.00:2
chr11	67431914	rs17856219	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,57:32:57:1.00:2	0/1:35,48:31:83:0.578:2	./.	./.	./.	./.	0/1:33,23:33:56:0.411:2	./.
chr11	67432804	rs2447571	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:29:75:1.00:2	0/1:0,62:28:62:1.00:2	0/1:1,19:30:20:0.950:2	0/1:0,106:29:106:1.00:2	0/1:0,50:28:50:1.00:2	0/1:0,92:29:92:1.00:2	0/1:0,52:29:52:1.00:2	0/1:0,51:29:51:1.00:2	0/1:1,108:30:111:0.991:2	0/1:0,66:29:66:1.00:2	0/1:0,46:29:46:1.00:2
chr11	67432854	rs6591270	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:29:73:1.00:2	0/1:0,49:29:49:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,99:29:99:1.00:2	0/1:0,56:29:56:1.00:2	0/1:0,110:30:110:1.00:2	0/1:0,51:29:51:1.00:2	0/1:0,71:30:71:1.00:2	0/1:0,79:30:79:1.00:2	0/1:0,71:29:71:1.00:2	0/1:1,68:28:69:0.986:2
chr11	67433080	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:32:89:0.045:2	./.	./.	./.
chr11	67433869	rs1551888	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,59:30:59:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,14:30:14:1.00:2	./.	0/1:83,59:29:142:0.415:2	0/1:0,96:30:96:1.00:2	0/1:0,89:30:89:1.00:2	0/1:2,110:30:112:0.982:2	0/1:0,116:31:116:1.00:2	0/1:50,35:31:85:0.412:2	0/1:0,64:29:64:1.00:2
chr11	67434089	rs140248913	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,37:30:90:0.411:2	./.	./.	./.	./.	./.
chr11	67434416	rs4646823	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:31:82:1.00:2	0/1:0,34:32:34:1.00:2	0/1:1,19:30:20:0.950:2	0/1:192,4:32:196:0.020:2	0/1:120,77:31:197:0.391:2	0/1:0,148:30:149:1.00:2	0/1:0,198:31:198:1.00:2	0/1:2,181:31:183:0.989:2	0/1:0,123:32:123:1.00:2	0/1:70,55:32:125:0.440:2	0/1:0,111:30:111:1.00:2
chr11	67763107	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:31:95:0.042:2	./.	./.	./.
chr11	67767099	rs368427313	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:32:15:0.533:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	67771153	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.
chr11	67789138	rs2286168	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,44:31:107:0.411:2	./.	./.	./.	./.	0/1:38,46:31:84:0.548:2	./.	0/1:26,35:31:61:0.574:2
chr11	67789153	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,3:35:74:0.041:2
chr11	67789177	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,3:30:15:0.200:2	0/1:129,6:31:135:0.044:2	0/1:163,11:28:174:0.063:2	0/1:138,9:30:147:0.061:2	0/1:119,9:30:128:0.070:2	0/1:147,18:29:165:0.109:2	0/1:116,9:31:125:0.072:2	0/1:92,5:31:97:0.052:2	0/1:78,4:31:82:0.049:2
chr11	67793509	rs2286163	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,34:31:67:0.507:2	./.	./.	./.	./.	0/1:34,62:31:96:0.646:2	./.	0/1:38,38:30:76:0.500:2
chr11	67795299	rs308341	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,22:31:22:1.00:2	0/1:0,6:32:6:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	67795353	rs3751082	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,16:32:16:1.00:2	0/1:0,5:31:5:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	67799652	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:120,4:32:124:0.032:2	./.	./.	./.	./.	./.	./.
chr11	67799731	rs3133266	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,101:33:101:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,149:32:149:1.00:2	0/1:0,155:32:155:1.00:2	0/1:0,175:33:175:1.00:2	0/1:0,177:32:177:1.00:2	0/1:0,170:32:170:1.00:2	0/1:0,168:33:168:1.00:2	0/1:0,122:32:122:1.00:2	0/1:0,130:33:130:1.00:2
chr11	67814979	rs2471829	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,136:32:136:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,150:33:151:1.00:2	0/1:0,147:32:147:1.00:2	0/1:0,166:32:166:1.00:2	0/1:0,127:32:127:1.00:2	./.	0/1:0,147:34:148:1.00:2	0/1:0,159:33:159:1.00:2	0/1:0,139:33:139:1.00:2
chr11	67815367	rs34174828	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:30:99:0.040:2	./.
chr11	67816674	rs145144233	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,68:31:104:0.654:2	./.	./.	./.	./.	./.
chr11	67818269	rs75596506	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,19:30:50:0.380:2	./.	./.	./.	./.	./.	./.
chr11	67925476	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:33:114:0.035:2	./.
chr11	67933387	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:32:171:0.023:2
chr11	67957518	rs2512606	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,123:32:123:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,135:32:135:1.00:2	0/1:0,123:31:123:1.00:2	0/1:0,119:31:119:1.00:2	0/1:0,148:32:148:1.00:2	0/1:0,158:31:158:1.00:2	0/1:0,164:32:164:1.00:2	0/1:0,126:31:126:1.00:2	0/1:0,156:32:157:1.00:2
chr11	68030015	rs901827	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,6:29:15:0.400:2	0/1:0,108:29:108:1.00:2	./.	0/1:0,106:29:106:1.00:2	./.	0/1:72,58:29:130:0.446:2	0/1:46,44:29:90:0.489:2	./.	0/1:41,44:30:85:0.518:2
chr11	68030173	rs3802746	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,113:31:114:0.991:2	0/1:0,69:32:70:1.00:2	./.	./.	0/1:116,79:31:195:0.405:2	./.	0/1:3,181:31:184:0.984:2	./.	0/1:102,91:32:193:0.472:2	0/1:96,87:31:183:0.475:2	./.
chr11	68030303	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:32:152:0.026:2	./.	./.	./.	./.
chr11	68157478	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,4:32:106:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr11	68157499	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,4:30:93:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr11	68171013	rs545382	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,156:30:156:1.00:2	0/1:0,97:29:97:1.00:2	0/1:0,29:29:29:1.00:2	0/1:1,154:31:156:0.994:2	0/1:0,173:29:173:1.00:2	0/1:0,176:30:176:1.00:2	0/1:0,172:30:172:1.00:2	0/1:84,86:30:170:0.506:2	0/1:0,184:31:184:1.00:2	0/1:0,172:31:172:1.00:2	0/1:92,84:31:176:0.477:2
chr11	68174122	rs2277268	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,50:31:75:0.667:2	0/1:59,54:32:113:0.478:2	./.	./.	./.	./.	./.	./.
chr11	68174189	rs4988321	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	0/1:66,61:32:127:0.480:2	./.	0/1:38,27:32:65:0.415:2	./.	./.
chr11	68177510	rs2306862	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,7:29:17:0.412:2	0/1:48,51:29:99:0.515:2	./.	0/1:67,36:29:103:0.350:2	0/1:78,55:29:133:0.414:2	./.	0/1:55,52:31:107:0.486:2	0/1:43,36:31:79:0.456:2	./.
chr11	68192630	rs17149104	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,16:30:31:0.516:2
chr11	68192690	rs556442	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,52:30:52:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,3:23:3:1.00:2	./.	0/1:17,26:30:43:0.605:2	0/1:29,23:30:52:0.442:2	0/1:12,14:29:26:0.538:2	0/1:14,26:31:40:0.650:2	0/1:25,23:30:48:0.479:2	0/1:19,23:31:42:0.548:2	0/1:16,9:28:25:0.360:2
chr11	68193582	rs117289001	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,29:30:61:0.475:2	./.	./.	./.
chr11	68201295	rs3736228	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,26:29:49:0.542:2	./.	0/1:28,34:27:62:0.548:2	0/1:13,12:25:25:0.480:2	./.	0/1:21,26:29:49:0.553:2	0/1:20,26:27:47:0.565:2	./.
chr11	68213989	rs1127291	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,22:32:35:0.629:2
chr11	68312357	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,3:34:67:0.045:2	./.	./.	./.	./.	./.
chr11	68326103	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:31:85:0.047:2	./.
chr11	68326131	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,4:28:83:0.048:2	./.	./.	./.	./.	./.	./.
chr11	68334553	rs192937737	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,48:32:89:0.539:2	./.	./.	./.	./.
chr11	68377475	rs79540432	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,17:31:42:0.415:2	./.	./.	./.
chr11	68382119	rs111503828	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,38:32:98:0.388:2
chr11	68455556	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,49:31:95:0.516:2	./.	./.
chr11	68458470	rs1042577	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,23:28:23:1.00:2	0/1:0,8:30:8:1.00:2	./.	./.	0/1:17,29:29:46:0.630:2	0/1:0,35:28:35:1.00:2	./.	0/1:21,11:29:32:0.344:2	0/1:0,23:28:23:1.00:2	0/1:15,6:28:21:0.286:2	0/1:0,33:28:33:1.00:2
chr11	68512543	rs12365708	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:59,40:30:99:0.404:2	0/1:40,35:29:75:0.467:2	./.	./.	0/1:35,32:29:67:0.478:2	./.	./.	./.	./.	./.	./.
chr11	68514730	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,3:33:53:0.057:2	./.	./.	./.	./.	./.	./.
chr11	68549340	rs2228502	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,131:31:132:1.00:2	0/1:0,125:31:125:1.00:2	0/1:0,33:30:33:1.00:2	0/1:84,87:31:172:0.509:2	0/1:0,147:30:147:1.00:2	0/1:0,189:31:189:1.00:2	0/1:0,132:32:132:1.00:2	0/1:1,174:31:175:0.994:2	0/1:1,191:32:193:0.995:2	0/1:0,145:32:145:1.00:2	0/1:0,181:31:181:1.00:2
chr11	68560778	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:32:68:0.059:2	./.	./.	./.	./.	./.
chr11	68560787	rs2229737	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,24:32:59:0.407:2	0/1:6,12:32:18:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	68660885	.	G	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,7:17:45:0.156:2	./.	./.	./.	0/1:53,8:19:61:0.131:2	./.	./.	0/1:51,7:25:58:0.121:2
chr11	68671285	rs201297361	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,10:30:24:0.417:2
chr11	68671419	rs4930624	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:4,8:32:12:0.667:2	0/1:4,6:30:10:0.600:2	./.	./.	./.	./.	./.	0/1:34,23:28:57:0.404:2	./.	0/1:18,15:27:33:0.455:2	./.
chr11	68671477	rs1249463	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,14:28:20:0.700:2	0/1:6,7:28:13:0.538:2	./.	0/1:22,16:29:38:0.421:2	0/1:0,51:28:51:1.00:2	0/1:2,62:29:64:0.969:2	0/1:35,20:28:55:0.364:2	0/1:40,32:29:72:0.444:2	0/1:30,14:30:44:0.318:2	0/1:16,20:27:37:0.556:2	0/1:0,21:28:21:1.00:2
chr11	68678962	rs560096	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,42:32:104:0.404:2	0/1:19,25:33:44:0.568:2	0/1:0,17:33:17:1.00:2	0/1:60,86:33:146:0.589:2	0/1:0,110:32:110:1.00:2	0/1:2,125:32:127:0.984:2	0/1:64,79:33:143:0.552:2	0/1:78,90:32:168:0.536:2	0/1:67,74:33:141:0.525:2	0/1:54,50:33:104:0.481:2	0/1:0,134:33:134:1.00:2
chr11	68682402	rs10896380	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:39,30:29:69:0.435:2	0/1:33,32:28:65:0.492:2	0/1:8,4:31:12:0.333:2	./.	./.	./.	./.	0/1:65,51:28:116:0.440:2	./.	0/1:43,30:28:73:0.411:2	./.
chr11	68701948	rs11228413	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:63,47:31:110:0.427:2	0/1:45,34:31:79:0.430:2	0/1:7,4:31:11:0.364:2	./.	./.	./.	./.	0/1:94,97:30:191:0.508:2	./.	0/1:60,46:30:106:0.434:2	./.
chr11	68703959	rs622082	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,24:32:24:1.00:2	0/1:0,23:32:23:1.00:2	0/1:15,10:33:25:0.400:2	./.	./.	./.	0/1:0,19:32:19:1.00:2
chr11	68704028	rs2236654	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:16,10:30:26:0.385:2	0/1:6,3:33:9:0.333:2	./.	./.	./.	./.	./.	0/1:14,9:32:23:0.391:2	./.	0/1:7,9:32:16:0.563:2	./.
chr11	68704264	rs546382	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,77:32:78:0.987:2	0/1:0,66:32:66:1.00:2	0/1:40,27:32:67:0.403:2	./.	./.	./.	0/1:1,72:31:73:0.986:2
chr11	68705674	rs17612126	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,7:31:10:0.700:2	0/1:43,34:31:77:0.442:2	./.	./.	./.	./.	0/1:39,33:31:72:0.458:2	./.	./.
chr11	68748003	rs34847539	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:29:46:1.00:2	0/1:0,29:29:29:1.00:2	0/1:0,7:31:7:1.00:2	0/1:35,31:29:66:0.470:2	./.	0/1:30,36:30:66:0.545:2	0/1:38,48:30:86:0.558:2	0/1:0,93:30:93:1.00:2	0/1:50,32:30:82:0.390:2	0/1:0,55:30:55:1.00:2	./.
chr11	68773403	rs11544722	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,14:28:14:1.00:2	0/1:9,4:28:13:0.308:2	./.	./.	./.	./.	0/1:0,11:29:11:1.00:2
chr11	68777323	rs11544721	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:8,9:31:17:0.529:2	0/1:8,4:31:12:0.333:2	./.	0/1:12,9:32:21:0.429:2	./.	0/1:13,14:32:27:0.519:2	./.	0/1:14,4:31:18:0.222:2	0/1:13,10:34:23:0.435:2	0/1:12,11:33:23:0.478:2	./.
chr11	68822739	rs1470892	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:31:33:1.00:2	0/1:0,14:32:15:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,26:33:26:1.00:2
chr11	68831364	rs72928978	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,34:31:80:0.425:2	./.	./.	./.	./.	./.	./.
chr11	68840160	rs3750965	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:35,18:33:53:0.340:2	0/1:18,15:31:33:0.455:2	0/1:0,5:33:5:1.00:2	./.	0/1:35,38:33:73:0.521:2	0/1:46,33:33:79:0.418:2	0/1:48,49:32:97:0.505:2	0/1:0,69:32:69:1.00:2	0/1:0,64:34:64:1.00:2	./.	0/1:39,49:32:88:0.557:2
chr11	68840397	rs1466221	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:18,20:30:38:0.526:2	0/1:19,13:29:32:0.406:2	./.	0/1:44,25:30:69:0.362:2	./.	0/1:51,40:28:91:0.440:2	./.	./.	./.	0/1:0,58:31:58:1.00:2	0/1:47,28:29:75:0.373:2
chr11	68840399	rs61746574	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,28:31:76:0.368:2
chr11	68840412	rs1466220	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:19,22:32:41:0.537:2	0/1:22,13:33:35:0.371:2	./.	0/1:45,28:32:73:0.384:2	./.	0/1:51,38:32:89:0.427:2	./.	./.	./.	0/1:0,62:33:62:1.00:2	0/1:51,35:33:86:0.407:2
chr11	68846399	rs35264875	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,67:30:150:0.447:2	0/1:76,69:30:146:0.476:2	./.	./.	./.	./.	./.	./.
chr11	68848916	rs34510004	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,12:31:29:0.414:2	./.	./.
chr11	68851414	rs17855774	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,166:30:166:1.00:2	0/1:0,170:29:170:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,175:30:175:1.00:2	0/1:2,170:30:172:0.988:2	0/1:0,172:29:172:1.00:2	0/1:107,64:30:171:0.374:2	0/1:1,170:29:171:0.994:2	0/1:1,164:31:165:0.994:2	0/1:0,163:30:163:1.00:2	0/1:1,165:29:166:0.994:2
chr11	68851466	rs896973	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:115,75:32:190:0.395:2	0/1:108,79:32:187:0.422:2	./.	0/1:104,88:32:192:0.458:2	./.	0/1:103,91:31:194:0.469:2	./.	./.	./.	0/1:0,194:32:194:1.00:2	0/1:71,87:32:158:0.551:2
chr11	68854012	rs35337391	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,80:33:195:0.410:2	0/1:94,101:32:195:0.518:2	./.	./.	./.	./.	./.	./.
chr11	68855363	rs3829241	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:23,13:32:36:0.361:2	0/1:11,8:32:19:0.421:2	./.	0/1:22,20:32:42:0.476:2	./.	0/1:26,26:32:52:0.500:2	./.	./.	./.	0/1:0,60:31:60:1.00:2	./.
chr11	69063136	rs7117236	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:24,3:32:27:0.111:2	./.	0/1:32,24:31:56:0.429:2	0/1:0,31:31:31:1.00:2	0/1:17,17:30:34:0.500:2	0/1:13,22:32:36:0.629:2	./.	./.	./.	./.
chr11	69063393	rs7103126	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,100:31:192:0.521:2	0/1:1,181:29:182:0.995:2	0/1:118,74:29:192:0.385:2	0/1:111,78:30:190:0.413:2	./.	./.	./.	./.
chr11	69063476	rs116926312	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,55:31:129:0.426:2	./.
chr11	69063510	rs11539762	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,55:30:99:0.556:2	./.	0/1:64,34:30:98:0.347:2	0/1:71,61:31:132:0.462:2	./.	./.	./.	./.
chr11	69063527	rs150423809	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,46:30:102:0.455:2	./.	./.	./.	./.	./.	./.
chr11	69063572	rs17856376	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,24:30:60:0.400:2	./.	./.	./.	./.	./.	./.
chr11	69063726	rs142581206	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,41:30:66:0.621:2	./.	./.	./.	./.	./.	./.
chr11	69063728	rs11228610	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,47:30:86:0.553:2	./.	0/1:43,55:30:98:0.561:2	0/1:38,57:31:95:0.600:2	./.	./.	./.	./.
chr11	69063767	rs12274095	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,56:30:95:0.589:2	0/1:44,66:30:110:0.600:2	./.	./.	./.	./.
chr11	69462910	rs9344	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:13,20:34:33:0.606:2	0/1:6,14:32:20:0.700:2	./.	0/1:1,66:33:67:0.985:2	./.	0/1:0,75:32:75:1.00:2	0/1:0,47:33:47:1.00:2	0/1:46,25:33:71:0.352:2	0/1:0,44:33:44:1.00:2	0/1:0,52:33:52:1.00:2	0/1:33,24:33:57:0.421:2
chr11	69933891	rs76718681	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,69:32:157:0.439:2	./.	./.	./.
chr11	69934085	rs10898112	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:27,19:31:46:0.413:2	0/1:12,12:32:24:0.500:2	./.	./.	0/1:30,33:30:63:0.524:2	0/1:36,25:31:61:0.410:2	./.	./.	0/1:0,72:32:72:1.00:2	./.	0/1:14,14:31:28:0.500:2
chr11	69954438	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,79:31:146:0.541:2	./.
chr11	70002012	rs11235438	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,20:31:35:0.571:2	./.	./.	./.	0/1:23,21:31:44:0.477:2	./.	./.
chr11	70002087	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,18:10:117:0.155:2	./.
chr11	70007311	rs2276066	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,5:30:12:0.417:2	0/1:36,37:32:74:0.507:2	0/1:53,50:31:103:0.485:2	./.	0/1:1,107:32:108:0.991:2	0/1:1,113:30:114:0.991:2	0/1:47,28:32:75:0.373:2	0/1:44,29:30:73:0.397:2	./.
chr11	70007392	rs2276067	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,17:29:17:1.00:2	0/1:51,69:29:120:0.575:2	0/1:88,105:29:193:0.544:2	./.	0/1:2,180:29:182:0.989:2	0/1:0,182:29:182:1.00:2	0/1:88,59:30:147:0.401:2	0/1:66,66:30:132:0.500:2	./.
chr11	70007770	rs2186797	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,129:32:130:0.992:2	0/1:2,85:32:87:0.977:2	./.	./.	./.	0/1:92,88:32:181:0.489:2	./.	./.	0/1:84,86:33:170:0.506:2	./.	./.
chr11	70007798	rs35916165	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,7:32:13:0.538:2	0/1:186,5:33:191:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr11	70017041	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:32:114:0.035:2
chr11	70034026	rs34064841	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	70034096	rs3740722	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,10:30:18:0.556:2	./.	./.	0/1:5,12:32:17:0.706:2	./.	./.	./.	./.
chr11	70118489	rs546502	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,17:29:34:0.500:2	./.	0/1:19,23:30:42:0.548:2	./.	./.
chr11	70172724	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,28:30:41:0.683:2	./.	./.	./.
chr11	70172819	rs143160253	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,28:33:68:0.412:2	./.	./.	./.	./.	./.	./.	./.
chr11	70176302	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:31:38:0.105:2	./.
chr11	70185325	rs1061328	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,44:31:114:0.386:2	./.	./.	./.	0/1:59,62:32:121:0.512:2	./.	./.	0/1:50,40:32:91:0.444:2
chr11	70185358	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,4:32:114:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr11	70189916	rs17160805	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,47:31:73:0.644:2	0/1:18,19:32:37:0.514:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	70200529	rs17853270	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,10:29:22:0.455:2	./.	./.	./.	0/1:22,13:29:35:0.371:2	./.	./.	0/1:3,12:31:15:0.800:2
chr11	70253475	rs2298397	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,25:31:48:0.521:2	0/1:9,8:32:17:0.471:2	./.	0/1:0,44:31:44:1.00:2	0/1:30,22:29:52:0.423:2	./.	0/1:16,28:31:44:0.636:2	0/1:58,23:32:81:0.284:2	./.	./.	0/1:30,17:31:47:0.362:2
chr11	70279766	rs643301	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,9:31:14:0.643:2	./.	./.	./.	0/1:96,58:31:154:0.377:2	./.	0/1:94,74:33:168:0.440:2	./.	./.
chr11	70333000	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,4:34:19:0.211:2
chr11	70333590	rs148522202	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:34:74:0.054:2	./.
chr11	70506015	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,60:30:136:0.441:2	./.	./.	./.	./.
chr11	70653140	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:107,4:32:111:0.036:2	./.	./.	./.	./.	./.	./.
chr11	70666765	rs11237599	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	70798902	rs34650500	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,27:26:49:0.551:2	0/1:32,17:27:50:0.347:2	0/1:1,52:27:53:0.981:2	0/1:20,29:26:49:0.592:2	./.	0/1:14,18:29:33:0.563:2
chr11	71146577	rs909217	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,5:31:18:0.278:2	./.	0/1:5,5:28:10:0.500:2	0/1:13,14:30:27:0.519:2	./.	0/1:25,15:27:40:0.375:2	0/1:18,17:29:35:0.486:2	0/1:0,26:30:26:1.00:2	0/1:0,23:30:23:1.00:2	0/1:16,8:28:24:0.333:2	0/1:7,4:29:11:0.364:2
chr11	71146691	rs760241	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,20:28:20:1.00:2	0/1:0,22:27:22:1.00:2	./.	0/1:0,25:26:25:1.00:2	0/1:34,14:28:48:0.292:2	0/1:0,38:28:38:1.00:2	0/1:0,32:28:32:1.00:2	0/1:0,28:28:28:1.00:2	0/1:0,28:28:28:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,24:28:24:1.00:2
chr11	71146886	rs138659167	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:31:7:0.429:2
chr11	71152461	rs949177	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:30:88:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,128:31:128:1.00:2	0/1:70,76:30:146:0.521:2	0/1:0,137:30:137:1.00:2	0/1:0,168:30:168:1.00:2	0/1:0,152:30:152:1.00:2	0/1:1,136:31:137:0.993:2	0/1:2,106:30:108:0.981:2	0/1:0,108:30:108:1.00:2
chr11	71155129	rs4316537	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,7:31:10:0.700:2	./.	0/1:66,29:31:95:0.305:2	0/1:44,47:31:91:0.516:2	./.	./.	./.	./.	./.
chr11	71155149	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:29:86:0.047:2	./.	./.	./.	./.	./.
chr11	71155153	rs1790334	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:29:50:1.00:2	0/1:0,32:29:32:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,81:28:81:1.00:2	0/1:72,25:29:97:0.258:2	0/1:0,82:30:82:1.00:2	0/1:1,91:29:92:0.989:2	0/1:2,100:30:102:0.980:2	0/1:0,60:31:60:1.00:2	0/1:0,64:29:64:1.00:2	0/1:3,49:28:52:0.942:2
chr11	71155171	rs1044482	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:19,27:31:46:0.587:2	0/1:24,17:32:41:0.415:2	./.	0/1:39,36:30:75:0.480:2	./.	0/1:42,27:30:69:0.391:2	0/1:39,53:31:92:0.576:2	0/1:2,97:31:99:0.980:2	0/1:2,60:32:62:0.968:2	0/1:31,26:30:57:0.456:2	0/1:17,32:30:49:0.653:2
chr11	71169547	rs2276360	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:62,51:33:113:0.451:2	0/1:51,30:33:81:0.370:2	./.	0/1:84,71:33:155:0.458:2	./.	0/1:72,68:33:140:0.486:2	0/1:93,71:33:164:0.433:2	0/1:1,157:33:158:0.994:2	0/1:1,134:34:135:0.993:2	0/1:94,60:33:154:0.390:2	0/1:107,61:33:168:0.363:2
chr11	71174553	rs1629220	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,23:32:43:0.535:2	0/1:19,19:31:38:0.500:2	0/1:0,4:33:4:1.00:2	0/1:31,17:31:48:0.354:2	0/1:34,42:31:76:0.553:2	0/1:25,33:32:58:0.569:2	0/1:27,36:32:63:0.571:2	./.	./.	0/1:12,12:31:24:0.500:2	0/1:22,17:31:39:0.436:2
chr11	71183474	rs2282621	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:46,31:32:77:0.403:2	0/1:28,17:32:45:0.378:2	./.	0/1:45,49:31:94:0.521:2	./.	0/1:55,40:31:95:0.421:2	0/1:70,46:31:116:0.397:2	0/1:0,98:32:98:1.00:2	0/1:0,84:33:84:1.00:2	0/1:35,43:31:78:0.551:2	0/1:52,64:32:116:0.552:2
chr11	71183477	rs2282620	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:45,31:33:76:0.408:2	0/1:30,17:32:47:0.362:2	./.	0/1:45,49:31:94:0.521:2	./.	0/1:57,40:31:97:0.412:2	0/1:72,46:32:118:0.390:2	0/1:0,98:32:98:1.00:2	0/1:0,85:33:85:1.00:2	0/1:36,43:32:79:0.544:2	0/1:57,64:33:121:0.529:2
chr11	71184678	rs7950441	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,98:30:98:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,150:29:150:1.00:2	0/1:0,148:29:148:1.00:2	0/1:0,171:30:171:1.00:2	0/1:0,141:30:141:1.00:2	0/1:0,174:30:174:1.00:2	0/1:0,126:31:126:1.00:2	0/1:1,87:29:88:0.989:2	0/1:0,128:29:128:1.00:2
chr11	71185479	rs2276354	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:29:95:1.00:2	0/1:0,31:29:31:1.00:2	0/1:1,16:31:17:0.941:2	0/1:1,139:30:140:0.993:2	0/1:96,64:28:160:0.400:2	0/1:0,117:30:117:1.00:2	0/1:1,147:30:148:0.993:2	0/1:0,162:29:162:1.00:2	0/1:0,148:30:148:1.00:2	0/1:0,123:30:123:1.00:2	0/1:1,119:29:120:0.992:2
chr11	71185518	rs2186778	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,114:29:114:1.00:2	0/1:0,46:29:46:1.00:2	0/1:0,23:31:23:1.00:2	0/1:2,162:30:164:0.988:2	0/1:116,72:29:188:0.383:2	0/1:1,165:29:166:0.994:2	0/1:1,188:30:189:0.995:2	0/1:0,181:29:181:1.00:2	0/1:0,172:30:172:1.00:2	0/1:1,143:30:144:0.993:2	0/1:0,133:29:133:1.00:2
chr11	71189436	rs2276353	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:33:42:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,45:33:45:1.00:2	0/1:15,8:31:23:0.348:2	0/1:0,59:32:59:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,44:33:44:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,55:31:55:1.00:2
chr11	71189452	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,23:32:46:0.500:2	./.	./.
chr11	71191817	rs7121106	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,12:32:12:1.00:2	./.	0/1:34,48:32:82:0.585:2	./.	./.	./.	./.	./.	./.
chr11	71192439	rs59379414	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,18:33:18:1.00:2	./.	0/1:48,35:31:83:0.422:2	./.	./.	./.	./.	./.	./.
chr11	71193000	rs200077392	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:54,12:16:66:0.182:2	./.	./.	0/1:69,14:13:83:0.169:2	0/1:95,17:12:112:0.152:2	0/1:77,11:19:89:0.125:2	0/1:101,19:12:121:0.158:2	0/1:76,22:16:98:0.224:2	0/1:59,20:13:79:0.253:2	0/1:55,10:14:66:0.154:2	./.
chr11	71238453	rs147685834	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:22,15:32:37:0.405:2	0/1:15,10:29:25:0.400:2	./.	0/1:27,27:31:54:0.500:2	./.	0/1:38,26:32:64:0.406:2	./.	./.	./.	0/1:25,17:31:42:0.405:2	0/1:11,7:34:18:0.389:2
chr11	71238460	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,4:30:32:0.125:2	./.	./.	./.	./.	./.	./.
chr11	71238479	rs200751050	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,4:29:43:0.093:2	./.	./.	./.	./.	./.	./.
chr11	71238541	rs199810185	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:38,3:35:41:0.073:2	./.	./.	./.	0/1:20,3:32:23:0.130:2	./.	./.	./.	./.	./.	./.
chr11	71238607	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,6:26:71:0.085:2	./.	./.	./.
chr11	71238639	rs199903176	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:31:59:0.068:2	0/1:36,5:32:41:0.122:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	71238658	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:31:61:0.066:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	71238808	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:107,6:32:113:0.053:2	./.	./.	./.	./.	./.	./.	0/1:186,5:31:191:0.026:2	./.	./.	./.
chr11	71238820	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,6:33:102:0.059:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	71239086	rs11234042	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:48,47:31:95:0.495:2	0/1:41,23:31:64:0.359:2	./.	0/1:54,56:31:110:0.509:2	./.	0/1:49,61:31:110:0.555:2	./.	./.	./.	0/1:52,54:30:106:0.509:2	0/1:69,57:30:126:0.452:2
chr11	71239298	rs10898241	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:28,31:32:59:0.525:2	0/1:17,18:32:35:0.514:2	./.	0/1:41,23:32:64:0.359:2	./.	0/1:28,39:31:67:0.582:2	./.	./.	./.	0/1:31,39:32:70:0.557:2	0/1:32,43:32:75:0.573:2
chr11	71249152	rs112809261	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,9:31:26:0.346:2	./.	0/1:37,6:30:43:0.140:2	./.	0/1:3,12:32:15:0.800:2
chr11	71249158	rs200887508	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,3:30:20:0.150:2	./.	0/1:37,6:29:43:0.140:2	./.	0/1:4,9:26:13:0.692:2
chr11	71249183	rs55921335	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,7:28:7:1.00:2
chr11	71249275	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,3:28:16:0.188:2	./.	./.	./.	./.
chr11	71249307	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,3:33:24:0.125:2	./.	./.	./.	./.
chr11	71249386	rs7101792	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:31:40:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,81:31:81:1.00:2	0/1:0,124:31:124:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,50:31:50:1.00:2
chr11	71249458	rs372455775	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:32:48:0.085:2	./.	./.	./.	./.	./.	./.	./.	0/1:96,6:28:102:0.059:2	./.
chr11	71249471	rs112605265	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:31:113:0.035:2	./.	./.	0/1:97,6:29:104:0.058:2	./.
chr11	71249521	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,5:27:86:0.058:2	./.	./.	./.	./.	./.	./.	./.
chr11	71249545	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,5:30:91:0.055:2	./.	./.	./.	./.	./.
chr11	71249558	rs374587723	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,5:32:93:0.054:2	./.	./.	./.	./.	./.
chr11	71249605	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,24:30:95:0.253:2	./.	./.	0/1:87,15:29:102:0.147:2	./.	0/1:86,8:30:94:0.085:2	./.	0/1:62,4:32:66:0.061:2
chr11	71259822	rs10792769	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,87:33:89:0.978:2	./.	./.	0/1:24,21:32:45:0.467:2	./.	0/1:54,37:32:91:0.407:2	./.	./.
chr11	71259841	rs189729045	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,55:30:124:0.444:2	./.	./.	./.	./.	./.
chr11	71260243	rs2664	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,101:29:102:0.990:2	./.	./.	0/1:96,62:29:158:0.392:2	./.	0/1:82,64:29:146:0.438:2	./.	0/1:0,123:29:123:1.00:2
chr11	71260296	rs2663	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,90:31:90:1.00:2
chr11	71260348	rs2665	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,50:31:50:1.00:2	./.	./.	0/1:25,13:32:38:0.342:2	./.	0/1:35,23:33:58:0.397:2	./.	./.
chr11	71276632	rs36164574	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,59:32:60:0.983:2	./.	./.	0/1:42,31:31:73:0.425:2	./.	0/1:62,30:33:92:0.326:2	./.	0/1:3,54:32:57:0.947:2
chr11	71276681	rs113879786	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,19:32:23:0.826:2	./.	./.	0/1:14,9:28:23:0.391:2	./.	0/1:25,11:32:36:0.306:2	./.	0/1:0,13:32:13:1.00:2
chr11	71276702	rs113977776	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,8:30:13:0.615:2	./.	./.	./.	./.	0/1:21,3:30:24:0.125:2	./.	0/1:2,6:30:8:0.750:2
chr11	71276831	rs71473841	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,44:28:45:0.978:2	./.	./.	0/1:10,9:27:19:0.474:2	./.	0/1:16,10:28:26:0.385:2	./.	0/1:1,14:28:15:0.933:2
chr11	71277083	rs146926834	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,32:30:74:0.432:2	./.	./.	./.	./.	./.
chr11	71277273	rs66487667	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,88:30:90:0.978:2	./.	./.	0/1:30,36:30:67:0.545:2	./.	0/1:34,41:32:75:0.547:2	./.	./.
chr11	71277333	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,6:30:93:0.065:2	./.	./.	./.
chr11	71277598	rs7120471	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,32:32:34:0.941:2	./.	./.	0/1:36,32:31:68:0.471:2	./.	0/1:19,28:32:47:0.596:2	./.	0/1:1,41:33:42:0.976:2
chr11	71293474	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,3:33:61:0.051:2	./.	./.
chr11	71293818	rs200909312	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,14:32:57:0.246:2	./.	./.	./.	./.	./.	./.	./.
chr11	71293892	rs75907819	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:111,67:31:178:0.376:2	./.	0/1:73,85:31:158:0.538:2	./.	0/1:106,67:32:173:0.387:2	./.	./.
chr11	71304774	rs2096802	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:30:28:1.00:2	0/1:0,10:31:10:1.00:2	0/1:4,3:31:7:0.429:2	0/1:1,44:31:45:0.978:2	0/1:3,13:31:16:0.813:2	0/1:0,23:31:23:1.00:2	0/1:0,26:31:26:1.00:2	./.	0/1:0,21:32:21:1.00:2	0/1:8,18:32:26:0.692:2	./.
chr11	71304920	rs183367440	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,4:35:19:0.211:2	./.	./.	./.	./.	./.	./.
chr11	71305076	rs9735099	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,30:33:30:1.00:2	0/1:0,19:32:19:1.00:2	./.	0/1:0,16:31:16:1.00:2	0/1:5,4:33:9:0.444:2	0/1:0,10:32:10:1.00:2	0/1:0,9:30:9:1.00:2	./.	0/1:0,26:33:26:1.00:2	0/1:18,20:33:38:0.526:2	./.
chr11	71305139	rs111635283	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,6:32:10:0.600:2	./.	./.	0/1:7,9:33:16:0.563:2	./.	./.	0/1:13,12:33:25:0.480:2
chr11	71305224	rs184262147	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,3:30:12:0.250:2
chr11	71305236	rs9734262	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,5:33:5:1.00:2	0/1:0,10:33:10:1.00:2	./.	0/1:0,10:33:10:1.00:2	./.	0/1:0,5:32:5:1.00:2	0/1:0,3:32:3:1.00:2	./.	0/1:0,5:32:5:1.00:2	0/1:10,7:33:17:0.412:2	./.
chr11	71498671	rs12283346	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	71504475	rs3935309	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,33:30:34:0.971:2	0/1:0,30:29:30:1.00:2	0/1:0,6:31:6:1.00:2	0/1:34,89:29:123:0.724:2	0/1:52,23:28:75:0.307:2	0/1:0,64:29:64:1.00:2	0/1:0,56:30:56:1.00:2	./.	0/1:63,78:29:141:0.553:2	0/1:1,59:28:60:0.983:2	0/1:0,70:30:70:1.00:2
chr11	71507152	rs117374975	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,5:32:51:0.098:2	0/1:82,4:31:86:0.047:2	./.	./.	./.
chr11	71507157	rs150702586	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,5:29:52:0.096:2	0/1:88,4:31:92:0.043:2	./.	./.	./.
chr11	71507158	rs138882787	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,5:30:52:0.096:2	0/1:89,5:24:94:0.053:2	./.	./.	./.
chr11	71507186	rs74830167	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,18:30:39:0.462:2
chr11	71507205	rs57679800	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,5:31:64:0.078:2	./.	./.
chr11	71544246	rs201337068	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:147,47:31:194:0.242:2	0/1:142,48:29:190:0.253:2	0/1:59,13:29:72:0.181:2	0/1:159,39:31:199:0.197:2	0/1:130,56:30:186:0.301:2	0/1:137,43:30:180:0.239:2	0/1:132,50:30:182:0.275:2	0/1:170,24:31:194:0.124:2	0/1:134,62:31:196:0.316:2	0/1:128,46:29:174:0.264:2	0/1:151,39:31:190:0.205:2
chr11	71544269	rs11235192	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,139:32:191:0.728:2	0/1:54,97:32:151:0.642:2	0/1:9,42:32:51:0.824:2	0/1:81,114:32:195:0.585:2	0/1:105,37:32:142:0.261:2	0/1:66,126:32:192:0.656:2	0/1:54,100:32:154:0.649:2	./.	0/1:82,112:33:194:0.577:2	0/1:69,128:32:197:0.650:2	0/1:53,137:32:190:0.721:2
chr11	71548448	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:31:77:0.052:2	./.	./.	./.	./.
chr11	71548465	rs12285436	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,144:31:150:0.960:2	0/1:3,120:31:124:0.976:2	0/1:0,26:32:26:1.00:2	0/1:3,139:32:142:0.979:2	0/1:69,35:32:104:0.337:2	0/1:2,151:31:153:0.987:2	0/1:6,62:32:68:0.912:2	./.	0/1:2,125:32:127:0.984:2	0/1:0,154:32:154:1.00:2	0/1:3,156:31:159:0.981:2
chr11	71548492	rs12793731	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,86:32:89:0.966:2	0/1:3,83:32:86:0.965:2	0/1:0,13:31:13:1.00:2	0/1:3,69:32:72:0.958:2	./.	0/1:1,70:32:71:0.986:2	0/1:1,40:32:41:0.976:2	./.	0/1:1,65:32:66:0.985:2	0/1:38,29:32:67:0.433:2	0/1:47,44:32:91:0.484:2
chr11	71548520	rs12285495	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,35:31:37:0.946:2	0/1:2,46:32:48:0.958:2	0/1:0,5:32:5:1.00:2	0/1:1,44:31:45:0.978:2	0/1:34,12:30:46:0.261:2	0/1:1,41:31:42:0.976:2	0/1:0,24:32:24:1.00:2	./.	0/1:3,48:33:51:0.941:2	0/1:0,46:32:46:1.00:2	0/1:4,70:32:74:0.946:2
chr11	71548544	rs7120658	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,29:31:32:0.935:2	0/1:2,30:29:32:0.938:2	0/1:0,3:30:3:1.00:2	0/1:2,30:30:32:0.938:2	0/1:23,11:28:34:0.324:2	0/1:0,35:28:35:1.00:2	0/1:1,18:30:19:0.947:2	./.	0/1:1,44:30:45:0.978:2	0/1:0,34:30:34:1.00:2	0/1:2,52:29:54:0.963:2
chr11	71640096	rs376190587	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:49,13:25:62:0.210:2	./.	./.	0/1:75,11:21:86:0.128:2	./.	./.	./.	0/1:101,9:18:110:0.082:2	./.	0/1:37,6:22:43:0.140:2	./.
chr11	71668317	rs201746342	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,60:31:130:0.462:2
chr11	71671810	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:34:80:0.050:2	./.
chr11	71712875	rs201408229	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:130,15:15:145:0.103:2	./.	./.	0/1:163,17:14:180:0.094:2	./.	0/1:166,18:16:184:0.098:2	./.	0/1:175,14:16:189:0.074:2	./.	./.	./.
chr11	71714528	rs949323	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:32:58:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,73:31:73:1.00:2	0/1:1,55:32:56:0.982:2	0/1:0,79:32:79:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,51:30:51:1.00:2
chr11	71720030	rs74985106	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,40:30:92:0.435:2	./.
chr11	71724515	rs200358741	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,60:32:151:0.400:2
chr11	71724789	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,3:32:37:0.081:2	./.	./.
chr11	71729261	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:32:196:0.021:2	./.	./.	./.	./.
chr11	71806087	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,43:32:82:0.524:2	./.	./.
chr11	71847031	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,6:32:161:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:32:146:0.027:2
chr11	71847046	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,6:30:166:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	71850130	rs61734430	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,48:32:88:0.545:2	./.	0/1:58,63:31:121:0.521:2	./.	./.	./.	./.	./.
chr11	71939511	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,4:33:39:0.103:2	./.	./.
chr11	71941212	rs2276048	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,61:30:140:0.436:2	0/1:33,42:30:75:0.560:2	./.	0/1:91,45:30:136:0.331:2	./.	0/1:43,33:31:76:0.434:2	0/1:41,29:30:70:0.414:2
chr11	71942104	rs17162091	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,19:32:38:0.500:2	./.	0/1:42,33:32:75:0.440:2	./.	./.	./.
chr11	71942621	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:32:93:0.043:2	./.	./.	./.	./.	./.
chr11	71943960	rs61749194	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,32:30:83:0.386:2	./.	0/1:51,30:30:81:0.370:2	./.	./.	./.
chr11	71943961	rs61749195	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,32:31:85:0.376:2	./.	0/1:51,30:31:81:0.370:2	./.	./.	./.
chr11	71945332	rs61736312	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,43:29:93:0.462:2	./.	0/1:82,58:29:140:0.414:2	./.	./.	0/1:38,47:31:86:0.553:2
chr11	71948536	rs11548491	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,21:31:51:0.412:2	./.	0/1:30,27:31:57:0.474:2	./.	./.	0/1:25,20:30:45:0.444:2
chr11	72004653	rs150343959	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,37:30:86:0.430:2	./.	./.	./.	./.
chr11	72040784	rs36049191	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,21:32:37:0.568:2	./.	0/1:22,19:31:41:0.463:2	./.	./.	./.
chr11	72288599	rs1980091	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:7,7:31:14:0.500:2	0/1:6,9:32:15:0.600:2	./.	./.	0/1:0,26:31:26:1.00:2	./.	0/1:13,10:27:23:0.435:2	0/1:12,16:31:28:0.571:2	0/1:0,16:31:16:1.00:2	0/1:7,6:30:13:0.462:2	0/1:0,7:31:7:1.00:2
chr11	72289291	rs1135029	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,59:30:119:0.496:2	0/1:37,23:30:60:0.383:2	0/1:11,6:30:17:0.353:2	0/1:73,66:29:139:0.475:2	./.	0/1:0,153:29:153:1.00:2	0/1:107,83:30:190:0.437:2	0/1:97,94:30:191:0.492:2	./.	0/1:65,57:30:122:0.467:2	./.
chr11	72290629	rs392565	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:10,4:33:14:0.286:2	./.	./.	./.	0/1:0,6:32:6:1.00:2	./.	0/1:6,8:29:14:0.571:2	0/1:19,10:32:29:0.345:2	0/1:1,11:31:12:0.917:2	0/1:3,8:33:11:0.727:2	0/1:0,14:30:14:1.00:2
chr11	72291927	rs577536	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:32:58:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,74:33:74:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,62:32:62:1.00:2	0/1:1,68:33:69:0.986:2	0/1:0,60:32:60:1.00:2	0/1:1,52:33:53:0.981:2	0/1:0,49:33:49:1.00:2	0/1:0,46:33:46:1.00:2
chr11	72293602	rs4944557	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:30:42:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,40:29:40:1.00:2	0/1:0,48:29:48:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,66:29:66:1.00:2	0/1:0,59:30:59:1.00:2	0/1:1,51:29:52:0.981:2	0/1:0,52:29:52:1.00:2
chr11	72295502	rs366711	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,10:26:10:1.00:2	0/1:0,12:26:12:1.00:2	0/1:0,2:27:2:1.00:2	0/1:0,19:27:19:1.00:2	0/1:0,19:25:19:1.00:2	0/1:0,12:28:12:1.00:2	0/1:0,34:26:34:1.00:2	0/1:0,19:28:19:1.00:2	0/1:0,15:28:15:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,10:27:10:1.00:2
chr11	72295906	rs452228	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:27:38:1.00:2	0/1:0,16:27:16:1.00:2	0/1:0,3:28:3:1.00:2	0/1:0,45:27:45:1.00:2	0/1:0,51:28:51:1.00:2	0/1:0,56:28:56:1.00:2	0/1:0,57:27:57:1.00:2	0/1:0,66:26:66:1.00:2	0/1:0,52:27:52:1.00:2	0/1:1,61:28:62:0.984:2	0/1:1,37:26:39:0.974:2
chr11	72301503	rs341047	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:30:11:0.364:2	./.	./.
chr11	72396677	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,5:32:73:0.068:2	./.	./.	./.	./.	./.
chr11	72406825	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,4:32:194:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr11	72408055	rs56200889	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,4:28:14:0.286:2	0/1:6,6:32:12:0.500:2	./.	./.	0/1:0,19:30:19:1.00:2	0/1:9,5:31:14:0.357:2	./.	0/1:7,13:28:20:0.650:2	./.	./.	0/1:6,3:34:9:0.333:2
chr11	72408657	rs2291289	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,80:30:169:0.473:2	./.	./.	0/1:121,75:31:196:0.383:2	./.	./.	./.	0/1:63,73:31:136:0.537:2
chr11	72412699	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,18:32:32:0.563:2	0/1:14,11:33:25:0.440:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	72532708	rs11235603	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:33:6:1.00:2	0/1:0,4:26:4:1.00:2	0/1:0,7:32:7:1.00:2	./.	0/1:0,6:33:6:1.00:2	0/1:0,2:33:2:1.00:2	./.	0/1:0,4:31:4:1.00:2
chr11	72539432	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:31:69:0.058:2	./.
chr11	72945341	rs2511241	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,131:32:131:1.00:2	0/1:0,103:31:103:1.00:2	0/1:27,16:31:43:0.372:2	0/1:1,175:32:176:0.994:2	0/1:0,190:31:190:1.00:2	0/1:0,182:32:182:1.00:2	0/1:0,191:31:191:1.00:2	0/1:0,167:32:167:1.00:2	0/1:0,170:32:170:1.00:2	0/1:0,171:32:171:1.00:2	0/1:101,88:32:190:0.466:2
chr11	72946020	rs1783596	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:29:5:1.00:2	0/1:0,84:31:84:1.00:2	./.	0/1:49,51:30:100:0.510:2	0/1:72,68:31:140:0.486:2	0/1:0,117:30:117:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,40:30:40:1.00:2	0/1:0,62:31:62:1.00:2
chr11	72946140	rs3741156	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,10:31:27:0.370:2	./.	./.	./.	0/1:0,24:30:24:1.00:2	0/1:7,15:33:22:0.682:2	./.	./.
chr11	72946204	rs1626154	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,10:28:16:0.625:2	0/1:6,5:28:11:0.455:2	./.	0/1:5,10:31:15:0.667:2	0/1:2,6:31:8:0.750:2	./.
chr11	72946279	rs74472890	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,25:30:67:0.379:2	./.	./.	./.
chr11	72946308	rs17244555	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,66:31:68:0.971:2	./.	./.	./.	./.	./.	./.
chr11	73007854	rs11235715	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:14,25:32:39:0.641:2	0/1:13,8:32:21:0.381:2	./.	./.	0/1:14,17:31:31:0.548:2	./.	./.	./.	./.	./.	./.
chr11	73008914	rs3741152	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,52:31:121:0.430:2	./.	./.	./.	0/1:74,66:31:140:0.471:2	./.	0/1:60,54:32:115:0.474:2	./.
chr11	73009026	rs76870107	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,20:29:46:0.435:2	./.	./.	./.	./.	./.	./.
chr11	73009084	rs7125949	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,14:33:41:0.341:2	./.	./.	./.	0/1:32,33:33:65:0.508:2	./.	0/1:23,17:31:40:0.425:2	./.
chr11	73009432	rs7115806	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,85:32:176:0.483:2	./.	./.	./.	0/1:81,89:31:170:0.524:2	./.	0/1:80,90:31:170:0.529:2	./.
chr11	73020058	rs12272360	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,3:29:3:1.00:2	./.	./.	./.	./.	./.	./.
chr11	73020820	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,3:30:23:0.130:2	./.	./.
chr11	73020846	rs3741151	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,7:31:18:0.389:2	./.	./.	./.	0/1:21,22:31:43:0.512:2	./.	0/1:7,11:31:18:0.611:2	./.
chr11	73020904	rs368720535	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:34:7:0.857:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	73021084	rs3741149	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,17:31:40:0.425:2	./.	./.	./.	0/1:28,18:32:46:0.391:2	./.	0/1:26,15:32:41:0.366:2	./.
chr11	73022246	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,49:32:123:0.398:2	./.	./.	./.
chr11	73067002	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:30:72:0.056:2	./.	./.	./.	./.	./.
chr11	73073580	rs76764824	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,6:29:8:0.750:2	./.	./.	./.
chr11	73075584	rs373679245	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	73076590	rs61749197	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,62:32:126:0.492:2	./.	./.	./.	./.	./.	./.
chr11	73100232	rs11826896	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,18:31:54:0.333:2	0/1:31,18:30:49:0.367:2	./.	./.	0/1:34,32:30:66:0.485:2	./.	0/1:19,26:31:46:0.578:2	./.
chr11	73106237	rs11544311	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,26:32:56:0.473:2	./.	./.	./.	0/1:34,17:30:52:0.333:2	./.	0/1:21,17:32:38:0.447:2	./.
chr11	73106294	rs17851510	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,22:32:49:0.449:2	./.	./.	./.	0/1:22,17:32:39:0.436:2	./.	0/1:20,13:33:33:0.394:2	./.
chr11	73120653	rs10793060	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,85:32:189:0.450:2	0/1:105,84:32:189:0.444:2	./.	./.	0/1:82,76:31:158:0.481:2	./.	0/1:84,87:31:171:0.509:2	./.
chr11	73390774	rs78542404	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:30:3:1.00:2
chr11	73427317	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:188,8:30:196:0.041:2	./.	./.	./.	./.	0/1:191,5:33:196:0.026:2	./.
chr11	73427332	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:184,12:28:196:0.061:2	0/1:185,8:30:193:0.041:2	./.	./.	./.	0/1:192,5:30:197:0.025:2	./.
chr11	73427354	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:193,4:32:197:0.020:2	0/1:188,5:32:193:0.026:2	./.	./.	./.	./.	./.
chr11	73429856	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,5:33:179:0.028:2
chr11	73471674	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:163,6:29:169:0.036:2	./.	./.	./.	0/1:174,4:32:178:0.022:2	./.	./.
chr11	73471681	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:152,6:32:158:0.038:2	./.	./.	./.	0/1:172,4:36:176:0.023:2	./.	./.
chr11	73588122	rs192274848	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:31:88:0.045:2	./.	./.	./.	./.	./.
chr11	73620537	rs3741138	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,82:32:191:0.429:2	./.	0/1:106,88:33:194:0.454:2	./.	./.	./.	./.
chr11	73620635	rs140276370	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,62:31:120:0.517:2	./.	./.	./.	./.	./.	./.
chr11	73670645	rs653263	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,36:29:85:0.424:2	0/1:1,59:28:60:0.983:2	./.	0/1:0,69:28:69:1.00:2	0/1:66,60:29:126:0.476:2	0/1:55,39:29:94:0.415:2	0/1:51,43:29:94:0.457:2	./.
chr11	73681090	rs2306819	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,40:31:67:0.597:2	0/1:60,19:31:79:0.241:2	./.	0/1:45,36:30:81:0.444:2	0/1:51,40:31:91:0.440:2	./.	0/1:0,70:32:70:1.00:2	./.
chr11	73681135	rs72982975	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,44:30:44:1.00:2	0/1:36,15:30:51:0.294:2	./.	0/1:32,22:29:54:0.407:2	./.	./.	0/1:22,26:30:48:0.542:2	./.
chr11	73689104	rs660339	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,35:30:36:0.972:2	0/1:0,47:30:47:1.00:2	./.	0/1:0,42:31:43:1.00:2	./.	./.	0/1:17,15:30:32:0.469:2	./.
chr11	73715542	rs2075577	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,17:31:27:0.630:2	0/1:1,135:31:136:0.993:2	0/1:1,152:30:153:0.993:2	./.	0/1:2,161:31:163:0.988:2	0/1:100,82:31:183:0.451:2	./.	0/1:0,105:31:105:1.00:2	./.
chr11	73717247	rs2229707	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,7:32:8:0.875:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	73717254	rs1800006	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,7:30:8:0.875:2	./.	0/1:46,45:29:91:0.495:2	./.	0/1:32,27:30:59:0.458:2	./.	./.	./.	./.
chr11	73760413	rs111594125	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,49:31:115:0.426:2	./.	./.	./.	./.
chr11	73765731	rs117181508	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,9:32:30:0.300:2	./.	./.	./.
chr11	73768553	rs12419308	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,27:29:79:0.342:2	./.
chr11	73785326	rs4453265	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,8:33:14:0.571:2	0/1:0,144:32:145:1.00:2	0/1:71,95:32:166:0.572:2	./.	0/1:81,70:33:151:0.464:2	0/1:89,77:32:166:0.464:2	./.	0/1:0,100:33:101:1.00:2	./.
chr11	73789332	rs75137555	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,90:32:197:0.457:2	./.	./.	./.	./.
chr11	73796760	rs112581232	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,9:31:20:0.450:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	73796917	rs826058	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,80:32:81:0.988:2	0/1:28,19:31:47:0.404:2	./.	0/1:5,59:32:64:0.922:2	0/1:50,34:32:84:0.405:2	./.	0/1:0,53:32:53:1.00:2	./.
chr11	73814438	rs34050666	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,80:28:193:0.415:2	./.	./.	./.
chr11	73850002	rs72984881	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,34:29:80:0.425:2	./.	./.	./.	./.	./.	./.	./.
chr11	73946931	rs2302509	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,34:32:63:0.540:2	./.	./.	./.
chr11	73988118	rs145796670	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,76:32:191:0.398:2	./.	./.	./.
chr11	73997310	rs148426172	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,20:33:46:0.435:2	./.	./.	./.	./.
chr11	74047743	rs36014178	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:31:10:0.400:2	./.	./.	./.	./.	./.	./.	0/1:30,34:31:64:0.531:2	./.
chr11	74049569	rs3867270	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,75:30:75:1.00:2	0/1:0,61:29:61:1.00:2	./.	./.	0/1:45,38:30:83:0.458:2	0/1:0,94:29:94:1.00:2	./.	./.	./.	./.	0/1:1,112:29:113:0.991:2
chr11	74053547	rs592644	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,44:31:44:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,7:27:7:1.00:2	./.	0/1:32,10:31:42:0.238:2	0/1:0,48:31:48:1.00:2	0/1:12,14:31:26:0.538:2	./.	./.	0/1:36,16:32:52:0.308:2	0/1:0,50:31:50:1.00:2
chr11	74168411	rs2270676	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,43:32:99:0.434:2	0/1:66,62:30:128:0.484:2	./.	./.	./.	./.	./.	./.
chr11	74203256	rs141813641	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,12:30:19:0.632:2	./.	./.	0/1:70,45:30:115:0.391:2	./.	./.	./.	./.	./.
chr11	74203308	rs586088	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:47,45:31:92:0.489:2	0/1:31,27:30:58:0.466:2	0/1:6,10:30:16:0.625:2	./.	0/1:0,173:31:173:1.00:2	0/1:62,59:30:121:0.488:2	0/1:95,71:30:166:0.428:2	0/1:1,132:31:133:0.992:2	0/1:59,58:32:117:0.496:2	0/1:69,59:31:128:0.461:2	./.
chr11	74204328	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr11	74303686	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,7:20:40:0.179:2	./.
chr11	74329615	rs4944052	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,69:33:71:0.972:2	0/1:0,47:32:47:1.00:2	0/1:7,8:33:15:0.533:2	0/1:74,71:33:145:0.490:2	0/1:56,52:32:108:0.481:2	0/1:56,37:32:93:0.398:2	0/1:77,49:33:126:0.389:2	./.	0/1:56,67:33:123:0.545:2	0/1:46,33:33:79:0.418:2	./.
chr11	74413872	rs34528207	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:17,4:33:21:0.190:2	./.	./.	./.	0/1:17,13:32:30:0.433:2	0/1:33,20:34:53:0.377:2	./.	./.	./.	./.
chr11	74419357	rs1944937	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,31:33:32:0.969:2	0/1:0,15:32:15:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,41:32:41:1.00:2	0/1:22,18:32:40:0.450:2	0/1:27,17:32:44:0.386:2	0/1:0,41:31:41:1.00:2	0/1:0,56:32:56:1.00:2	0/1:20,20:32:40:0.500:2	0/1:0,34:32:34:1.00:2	0/1:0,32:32:32:1.00:2
chr11	74419378	rs7948433	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:29:11:1.00:2	0/1:21,21:29:42:0.500:2	./.	./.	./.	0/1:23,28:32:51:0.549:2	0/1:20,19:31:39:0.487:2	./.	0/1:0,33:30:33:1.00:2
chr11	74546905	rs1125609	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,14:31:26:0.538:2	0/1:9,9:32:18:0.500:2	./.	0/1:13,19:30:32:0.594:2	0/1:15,10:31:25:0.400:2	0/1:12,14:30:26:0.538:2	0/1:8,5:31:13:0.385:2	0/1:1,25:29:26:0.962:2	./.	0/1:3,23:31:26:0.885:2	./.
chr11	74559228	rs77341304	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,18:29:41:0.450:2	./.	./.	./.	./.	./.	./.	./.
chr11	74559446	rs4944960	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:30:6:1.00:2	0/1:67,46:32:113:0.407:2	./.	./.	./.	./.	./.	./.	./.
chr11	74559481	rs4944961	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:31:8:1.00:2	0/1:38,43:32:81:0.531:2	./.	./.	./.	./.	./.	./.	./.
chr11	74563077	rs2304683	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,16:31:17:0.941:2	0/1:59,37:31:96:0.385:2	./.	./.	./.	./.	./.	./.	./.
chr11	74705602	rs7115499	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,44:33:78:0.564:2	./.	./.	./.	0/1:41,25:32:66:0.379:2	./.	0/1:62,45:32:107:0.421:2
chr11	74705696	rs544115	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,52:32:115:0.452:2	0/1:34,24:32:58:0.414:2	0/1:0,21:32:21:1.00:2	0/1:0,127:32:127:1.00:2	0/1:79,56:32:135:0.415:2	0/1:99,67:33:166:0.404:2	0/1:77,68:32:146:0.469:2	./.	0/1:3,125:33:129:0.977:2	0/1:57,48:33:105:0.457:2	0/1:0,119:32:119:1.00:2
chr11	74716874	rs147894902	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,57:33:95:0.600:2	0/1:30,28:31:58:0.483:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	74800437	rs139499548	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,17:32:34:0.500:2	./.	./.	./.	./.
chr11	74862391	rs1944612	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,18:33:18:1.00:2	0/1:0,7:33:7:1.00:2	./.	0/1:0,22:33:22:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,12:34:12:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,27:33:27:1.00:2
chr11	74880370	rs35199625	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,75:32:129:0.581:2	./.	./.	./.	./.
chr11	74883577	rs12422149	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,29:31:67:0.433:2	0/1:24,26:31:50:0.520:2	./.	./.	./.	0/1:56,37:31:93:0.398:2	0/1:69,48:31:117:0.410:2	./.	./.	0/1:45,34:32:79:0.430:2	0/1:48,35:30:83:0.422:2
chr11	74904362	rs1621378	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,100:31:100:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,140:32:140:1.00:2	0/1:1,174:31:175:0.994:2	0/1:0,149:31:149:1.00:2	0/1:0,153:32:153:1.00:2	0/1:0,171:31:171:1.00:2	0/1:1,121:32:122:0.992:2	0/1:0,101:32:102:1.00:2	0/1:1,92:31:93:0.989:2
chr11	74994352	rs877711	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,8:31:31:0.258:2	./.	./.	./.	./.
chr11	74995350	rs647630	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,23:31:53:0.434:2	0/1:13,17:30:31:0.567:2	0/1:0,3:31:3:1.00:2	0/1:0,68:31:68:1.00:2	0/1:1,69:31:70:0.986:2	./.	0/1:33,39:31:72:0.542:2	./.	0/1:1,69:31:70:0.986:2	0/1:0,53:30:53:1.00:2	0/1:31,32:30:63:0.508:2
chr11	75001034	rs34999509	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,75:32:134:0.560:2	./.	./.	./.	./.
chr11	75110589	rs3133187	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,68:30:124:0.548:2	./.	./.	./.	0/1:71,48:31:119:0.403:2	./.
chr11	75133765	rs11539810	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,37:30:73:0.514:2	./.	./.	./.	0/1:20,19:31:39:0.487:2	./.
chr11	75134813	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,18:31:47:0.383:2	./.
chr11	75152243	rs571353	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,47:28:111:0.435:2	0/1:36,40:29:78:0.526:2	0/1:0,20:28:21:1.00:2	0/1:0,179:28:183:1.00:2	0/1:99,96:27:195:0.492:2	0/1:3,185:27:189:0.984:2	0/1:105,86:29:192:0.450:2	0/1:1,188:28:190:0.995:2	./.	0/1:76,67:29:144:0.469:2	0/1:1,140:28:145:0.993:2
chr11	75160575	rs518611	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,66:29:149:0.443:2	0/1:71,68:31:139:0.489:2	0/1:0,33:30:33:1.00:2	0/1:0,155:30:155:1.00:2	0/1:99,73:30:172:0.424:2	0/1:0,157:30:157:1.00:2	0/1:92,84:31:176:0.477:2	0/1:2,150:30:152:0.987:2	./.	0/1:83,84:30:167:0.503:2	0/1:1,156:30:157:0.994:2
chr11	75167793	rs12789498	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,46:32:93:0.495:2	./.	0/1:40,51:32:91:0.560:2	./.	0/1:36,19:30:55:0.345:2	./.
chr11	75277628	rs584961	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	0/1:4,6:32:10:0.600:2	0/1:0,13:32:13:1.00:2	0/1:0,8:29:8:1.00:2	./.	./.	./.	0/1:0,4:33:4:1.00:2
chr11	75277757	rs650241	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,17:26:55:0.309:2	./.	./.	0/1:20,19:26:39:0.487:2	0/1:20,13:28:33:0.394:2	./.	./.
chr11	75277992	rs651581	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:31:4:1.00:2	0/1:0,7:31:7:1.00:2	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	0/1:0,4:29:4:1.00:2	./.
chr11	75279846	rs649257	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,84:33:180:0.467:2	./.	./.	0/1:87,79:32:166:0.476:2	0/1:53,55:33:108:0.509:2	./.	./.
chr11	75282882	rs585821	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,25:29:61:0.410:2	./.	./.	0/1:37,42:30:79:0.532:2	0/1:28,31:30:59:0.525:2	./.	./.
chr11	75298468	rs61895095	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,47:32:88:0.534:2	./.	0/1:62,49:32:112:0.441:2	./.	./.
chr11	75298797	rs1231128	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,14:29:28:0.500:2	0/1:100,77:29:177:0.435:2	./.	./.	./.	0/1:92,87:30:179:0.486:2	./.	./.	0/1:0,170:29:170:1.00:2
chr11	75428958	rs554202	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:85,66:32:152:0.437:2	0/1:43,29:32:72:0.403:2	0/1:13,17:33:30:0.567:2	0/1:95,94:33:189:0.497:2	0/1:106,92:32:198:0.465:2	0/1:0,191:32:191:1.00:2	0/1:99,99:32:198:0.500:2	0/1:4,187:32:191:0.979:2	0/1:3,179:33:182:0.984:2	0/1:1,153:32:155:0.994:2	./.
chr11	75431049	rs35828061	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,16:32:43:0.372:2	./.	./.
chr11	75590975	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,5:30:166:0.030:2	./.	./.	./.	./.	./.
chr11	75776837	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:35:102:0.039:2	./.	./.
chr11	75852448	rs636420	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:33:10:0.300:2	./.	./.	./.
chr11	75905800	rs1533767	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:30:4:0.750:2	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.
chr11	76061913	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:33:92:0.043:2	./.	./.
chr11	76061929	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,7:33:94:0.074:2	./.	./.
chr11	76062107	rs34345847	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,25:33:184:0.136:2	0/1:159,31:33:190:0.163:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	76062335	rs35409987	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:175,18:31:193:0.093:2	0/1:175,14:32:189:0.074:2	./.	./.	./.	./.	./.	./.	0/1:176,19:33:195:0.097:2	./.	./.
chr11	76062809	rs9666380	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:33:120:0.033:2	./.	./.
chr11	76062948	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:32:156:0.026:2	./.	./.	./.	./.	./.
chr11	76063181	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,16:33:198:0.081:2	./.	./.
chr11	76063505	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:155,4:31:160:0.025:2	./.	./.	./.	./.	./.	./.
chr11	76063717	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:32:141:0.028:2	./.	./.	./.
chr11	76072052	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,5:32:96:0.052:2	./.	./.	./.	./.	./.	./.	./.
chr11	76072076	rs139107723	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,4:30:84:0.048:2	./.	0/1:59,4:31:63:0.063:2	0/1:68,6:30:74:0.081:2	./.	./.	./.	./.
chr11	76072085	rs76214254	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:32:58:0.069:2	0/1:62,6:32:69:0.088:2	./.	./.	./.	./.
chr11	76091812	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,9:33:26:0.346:2	./.	./.	./.
chr11	76091859	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,9:30:25:0.360:2	./.	./.	./.
chr11	76171068	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,7:23:145:0.048:2
chr11	76255684	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,5:30:60:0.083:2	./.
chr11	76255815	rs35962163	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,17:29:25:0.680:2	./.	./.	./.	./.	./.	./.
chr11	76257215	rs3753051	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:41,30:29:71:0.423:2	0/1:24,12:29:36:0.333:2	./.	./.	./.	./.	0/1:1,80:28:81:0.988:2	0/1:45,44:29:89:0.494:2	./.	./.	./.
chr11	76370792	rs4304809	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:31:42:1.00:2	0/1:0,23:29:24:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,104:30:104:1.00:2	0/1:0,64:30:64:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,70:30:70:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,42:30:42:1.00:2
chr11	76371418	rs79525962	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,20:30:41:0.500:2	./.	./.
chr11	76372052	rs3740779	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,28:31:67:0.424:2	0/1:15,19:32:34:0.559:2	0/1:7,3:33:10:0.300:2	0/1:0,91:32:91:1.00:2	0/1:69,74:32:143:0.517:2	0/1:0,83:32:84:1.00:2	0/1:0,97:32:97:1.00:2	0/1:55,41:32:96:0.427:2	./.	./.	0/1:35,22:30:57:0.386:2
chr11	76372064	rs34672185	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,45:30:101:0.446:2	./.	./.	./.	./.	./.
chr11	76372144	rs201402057	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:27:58:0.069:2	./.	./.	./.	./.	./.
chr11	76372418	rs3740778	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,35:29:59:0.593:2	0/1:15,8:30:23:0.348:2	0/1:0,5:29:5:1.00:2	0/1:0,75:30:75:1.00:2	0/1:51,50:30:101:0.495:2	0/1:0,95:30:95:1.00:2	0/1:2,101:30:103:0.981:2	0/1:0,121:29:121:1.00:2	0/1:0,77:30:77:1.00:2	0/1:31,37:30:68:0.544:2	0/1:0,48:30:48:1.00:2
chr11	76506888	rs11546727	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,32:32:70:0.457:2	./.
chr11	76507692	rs1149621	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,6:29:20:0.300:2	0/1:4,6:32:10:0.600:2	0/1:0,4:32:4:1.00:2	0/1:0,23:31:23:1.00:2	./.	0/1:0,20:31:20:1.00:2	./.	0/1:0,13:31:13:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,19:31:19:1.00:2
chr11	76508825	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:33:83:0.048:2	./.	./.	./.	./.
chr11	76508843	rs7912	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,66:32:129:0.512:2	0/1:30,47:33:77:0.610:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	76508939	rs76195152	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,45:32:149:0.302:2	./.	./.
chr11	76637651	rs4379869	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,51:32:51:1.00:2	0/1:1,33:31:34:0.971:2	./.	0/1:0,54:32:54:1.00:2	0/1:0,58:32:58:1.00:2	0/1:2,84:32:86:0.977:2	0/1:0,61:31:61:1.00:2	0/1:1,60:32:61:0.984:2
chr11	76637680	rs4479014	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:31:59:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,6:31:6:1.00:2	0/1:1,47:31:48:0.979:2	0/1:1,45:31:46:0.978:2	./.	0/1:42,23:31:65:0.354:2	0/1:0,58:31:58:1.00:2	0/1:55,50:32:105:0.476:2	0/1:0,59:31:59:1.00:2	0/1:0,52:31:52:1.00:2
chr11	76687399	rs1517909	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,26:33:26:1.00:2	0/1:0,20:31:20:1.00:2	./.	0/1:0,33:32:33:1.00:2	0/1:0,26:32:26:1.00:2	./.	0/1:0,32:32:32:1.00:2	0/1:0,35:32:35:1.00:2	0/1:2,49:33:51:0.961:2	0/1:0,35:33:35:1.00:2	0/1:0,50:33:50:1.00:2
chr11	76701606	rs3740767	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,83:32:84:0.988:2	0/1:0,55:32:55:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,49:32:49:1.00:2	./.	0/1:29,32:32:61:0.525:2	0/1:4,60:32:65:0.938:2	0/1:74,47:32:121:0.388:2	0/1:0,86:32:86:1.00:2	0/1:2,120:32:122:0.984:2
chr11	76709795	rs11237053	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:33:14:0.286:2	./.	./.	./.	0/1:72,35:32:107:0.327:2	./.	0/1:94,57:33:151:0.377:2	./.	0/1:87,57:32:144:0.396:2
chr11	76751587	rs34153015	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	0/1:0,3:29:3:1.00:2	./.	./.
chr11	76795962	rs34801837	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,6:31:129:0.047:2	./.	./.	./.
chr11	76796018	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,9:13:45:0.200:2	./.	./.	./.	./.	./.
chr11	76796027	rs201256547	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,11:19:61:0.180:2	./.	./.	./.
chr11	76814110	rs2233549	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:34,33:32:67:0.493:2	0/1:15,23:32:38:0.605:2	./.	./.	./.	./.	./.	./.	./.	0/1:33,33:32:66:0.500:2	./.
chr11	76827360	rs11604536	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,55:31:117:0.474:2	0/1:5,108:31:113:0.956:2	0/1:69,50:31:119:0.420:2	0/1:76,59:31:136:0.437:2	0/1:67,48:31:115:0.417:2	./.	./.
chr11	76833701	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:32:61:0.066:2
chr11	76853783	rs1052030	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,5:33:11:0.455:2	0/1:57,65:31:122:0.533:2	./.	./.	0/1:79,100:31:179:0.559:2	0/1:90,75:31:165:0.455:2	./.	0/1:1,90:31:91:0.989:2	0/1:54,41:31:95:0.432:2
chr11	76858906	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:32:149:0.027:2	./.	./.	./.
chr11	76868372	rs762667	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:49,4:34:53:0.075:2	0/1:15,6:33:21:0.286:2	./.	0/1:50,37:32:87:0.425:2	0/1:0,103:33:103:1.00:2	0/1:79,59:33:139:0.428:2	./.	0/1:0,86:34:86:1.00:2	./.	0/1:68,72:32:140:0.514:2
chr11	76883862	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:34:102:0.039:2	./.
chr11	76910766	rs7927472	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,20:30:31:0.645:2	0/1:20,12:31:32:0.375:2	./.	./.	0/1:19,11:31:30:0.367:2	0/1:0,49:30:49:1.00:2	./.	./.	0/1:0,47:31:47:1.00:2	0/1:27,25:31:52:0.481:2	0/1:24,20:29:44:0.455:2
chr11	76912636	rs2276288	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,25:33:48:0.521:2	0/1:15,9:32:24:0.375:2	./.	./.	0/1:60,57:31:117:0.487:2	0/1:1,94:32:95:0.989:2	0/1:56,51:32:107:0.477:2	./.	0/1:0,87:33:87:1.00:2	0/1:31,33:33:64:0.516:2	0/1:28,36:32:64:0.563:2
chr11	76912684	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:32:53:0.075:2	./.	./.
chr11	76913457	rs77625410	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,13:33:38:0.342:2	./.	./.	./.	./.
chr11	76916624	rs111033504	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,45:31:107:0.421:2	./.	./.	./.	./.	./.	./.	./.
chr11	76916645	rs45450893	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,50:30:97:0.521:2	./.	./.	./.	./.	./.
chr11	76917220	rs2276293	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,32:33:54:0.593:2	0/1:12,24:31:37:0.667:2	./.	./.	0/1:50,42:31:92:0.457:2	0/1:0,105:32:105:1.00:2	0/1:64,64:33:128:0.500:2	./.	0/1:46,28:34:74:0.378:2	0/1:45,37:32:82:0.451:2	./.
chr11	76919468	rs1320703	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,27:32:46:0.587:2	0/1:19,28:32:47:0.596:2	0/1:3,8:28:11:0.727:2	0/1:73,36:30:109:0.330:2	./.	0/1:0,98:31:98:1.00:2	0/1:72,58:31:130:0.446:2	./.	0/1:65,47:31:112:0.420:2	0/1:33,55:32:88:0.625:2	0/1:39,38:31:77:0.494:2
chr11	76919478	rs948962	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,29:32:48:0.604:2	0/1:21,30:32:51:0.588:2	0/1:6,8:30:14:0.571:2	0/1:82,46:30:128:0.359:2	./.	0/1:0,106:31:106:1.00:2	0/1:74,62:31:136:0.456:2	./.	0/1:70,47:32:117:0.402:2	0/1:38,58:32:96:0.604:2	0/1:43,38:32:81:0.469:2
chr11	76922946	rs11237123	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,9:31:19:0.474:2	./.	./.	0/1:53,39:31:92:0.424:2	./.	./.	./.	./.	0/1:46,41:31:87:0.471:2
chr11	76954812	rs11237145	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,8:29:29:0.276:2	0/1:27,14:27:41:0.341:2	0/1:24,12:28:36:0.333:2	0/1:32,19:29:51:0.373:2	0/1:37,11:30:48:0.229:2	0/1:1,31:28:32:0.969:2	./.
chr11	76954833	rs11237146	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,6:29:23:0.261:2	0/1:20,14:29:34:0.412:2	0/1:22,9:30:31:0.290:2	0/1:26,10:29:36:0.278:2	0/1:26,6:31:32:0.188:2	0/1:1,27:30:28:0.964:2	./.
chr11	77090939	rs1130059	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,18:33:30:0.600:2	./.	./.	./.	./.	./.	./.
chr11	77301341	rs2276415	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,66:33:122:0.541:2	./.	./.
chr11	77330747	rs75346522	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,52:33:98:0.531:2	./.	./.	./.	./.	./.	./.
chr11	77336079	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,6:33:174:0.034:2	./.	./.	./.	./.	./.
chr11	77378388	rs4945197	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,54:32:113:0.478:2	./.	./.
chr11	77378505	rs28930682	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,23:31:44:0.523:2	./.	./.
chr11	77409568	rs4945203	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,86:31:171:0.503:2	./.	./.
chr11	77412344	rs140281656	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,32:31:104:0.308:2	./.	./.	./.	./.	./.	./.
chr11	77412851	rs7950873	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,20:33:47:0.426:2	0/1:30,30:32:60:0.500:2	./.	0/1:34,28:31:62:0.452:2	./.
chr11	77553638	rs585721	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,19:31:38:0.500:2	0/1:25,17:33:42:0.405:2	0/1:29,19:32:48:0.396:2	./.
chr11	77583266	rs2186564	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,30:32:65:0.462:2	./.	./.
chr11	77612562	rs71469587	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:33:148:0.027:2	./.
chr11	77614590	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:183,7:32:190:0.037:2	./.	./.	./.	./.	./.	0/1:184,5:31:189:0.026:2
chr11	77614592	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:154,8:31:162:0.049:2	0/1:94,7:32:101:0.069:2	./.	0/1:174,11:31:185:0.059:2	0/1:176,10:31:186:0.054:2	0/1:181,6:27:187:0.032:2	0/1:170,5:32:175:0.029:2	0/1:180,6:31:186:0.032:2	./.	0/1:144,5:32:149:0.034:2	0/1:179,8:32:187:0.043:2
chr11	77614629	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant6-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:78,4:33:82:0.049:2	./.	./.	./.	0/1:180,4:32:184:0.022:2	./.	./.	./.	./.	0/1:170,4:32:174:0.023:2
chr11	77614671	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,5:31:136:0.037:2	./.	./.	./.	./.	./.
chr11	77629959	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:30:198:0.025:2	./.	./.	./.	./.	./.
chr11	77633484	rs202056445	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:183,14:28:197:0.071:2	0/1:174,23:26:197:0.117:2	./.	./.	0/1:172,26:28:198:0.131:2	0/1:173,21:29:194:0.108:2	./.	./.
chr11	77635882	rs7119720	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,55:32:179:0.307:2	./.	0/1:96,76:32:172:0.442:2	./.
chr11	77639466	rs11607043	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,18:31:174:0.103:2	./.	0/1:137,27:31:164:0.165:2	./.
chr11	77639511	rs11607479	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,19:32:158:0.120:2	./.	0/1:93,20:32:113:0.177:2	./.
chr11	77669844	rs141229541	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:34:193:0.021:2	./.	./.
chr11	77734209	rs11237362	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,14:27:14:1.00:2	0/1:0,7:28:7:1.00:2	./.	0/1:18,6:28:24:0.250:2	0/1:19,7:29:26:0.269:2	0/1:0,13:29:13:1.00:2	./.	0/1:0,8:30:8:1.00:2	0/1:14,9:29:23:0.391:2	./.	0/1:2,5:29:7:0.714:2
chr11	77774947	rs150131716	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,35:33:61:0.574:2	./.
chr11	77775352	rs117003832	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,68:32:162:0.420:2	./.	./.	./.	./.
chr11	77790653	rs534418	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:31:37:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,5:33:5:1.00:2	0/1:36,13:31:49:0.265:2	0/1:25,21:29:46:0.457:2	0/1:0,31:30:31:1.00:2	0/1:13,19:32:32:0.594:2	0/1:0,38:31:38:1.00:2	0/1:0,45:33:46:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,29:31:29:1.00:2
chr11	77790655	rs8875	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	0/1:27,20:28:47:0.426:2	./.	0/1:15,17:30:32:0.531:2	./.	./.	0/1:21,13:29:34:0.382:2	0/1:0,29:29:29:1.00:2
chr11	77825320	rs665278	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:31:11:0.455:2	./.	0/1:31,31:31:62:0.500:2	./.	0/1:25,56:32:81:0.691:2	./.	./.	0/1:23,32:32:55:0.582:2	0/1:0,75:32:75:1.00:2
chr11	77909014	rs2510044	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,55:32:110:0.500:2	./.	./.	./.	./.	./.
chr11	77920563	rs2510045	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,32:31:71:0.451:2	./.	./.	./.	0/1:23,28:32:51:0.549:2	./.
chr11	77920863	rs2512527	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,42:31:71:0.592:2	./.
chr11	77920929	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:33:11:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	77920930	rs2511188	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,31:32:86:0.360:2	./.	./.	./.	./.	./.
chr11	77921402	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,9:20:50:0.180:2	./.	./.	./.	./.	./.
chr11	77921527	rs2512526	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:32:66:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,96:31:96:1.00:2	0/1:0,96:32:96:1.00:2	0/1:1,114:32:115:0.991:2	0/1:0,123:31:124:1.00:2	0/1:0,111:33:111:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,91:31:91:1.00:2
chr11	77921625	rs373447126	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,86:32:184:0.473:2
chr11	77930345	rs2450122	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,36:31:70:0.514:2	./.	./.	./.	0/1:32,39:30:72:0.549:2	./.
chr11	77930447	rs61749244	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,70:33:143:0.490:2	./.	./.
chr11	77936166	rs1385600	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,25:28:55:0.455:2	./.	./.	./.	0/1:30,11:27:41:0.268:2	./.
chr11	77937657	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,4:26:20:0.200:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	77937800	rs2248407	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,69:31:131:0.527:2	./.	./.	./.	0/1:50,42:30:92:0.457:2	./.
chr11	78128775	rs11237488	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,6:31:8:0.750:2	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.
chr11	78189653	rs116930926	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,53:32:119:0.445:2
chr11	78277277	rs10751296	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:32:29:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,35:32:35:1.00:2	0/1:12,5:32:17:0.294:2	0/1:29,18:32:47:0.383:2	0/1:0,22:32:22:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,52:31:52:1.00:2	0/1:15,15:30:30:0.500:2	0/1:0,40:31:40:1.00:2
chr11	78279790	rs10501429	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:32:28:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,37:32:37:1.00:2	0/1:12,14:31:26:0.538:2	0/1:24,17:32:41:0.415:2	0/1:1,18:32:19:0.947:2	0/1:0,42:32:42:1.00:2	0/1:0,38:33:38:1.00:2	0/1:14,11:33:25:0.440:2	0/1:1,42:32:43:0.977:2
chr11	78282448	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:32:150:0.027:2	./.
chr11	78369573	rs75922333	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,63:31:135:0.467:2	./.	./.	0/1:87,63:31:150:0.420:2	./.	./.	./.
chr11	78372536	rs2277277	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:93,89:31:182:0.489:2	0/1:80,47:31:127:0.370:2	0/1:0,20:28:20:1.00:2	0/1:91,85:30:177:0.483:2	0/1:124,65:30:189:0.344:2	0/1:2,175:30:177:0.989:2	0/1:1,166:30:167:0.994:2	0/1:83,88:30:171:0.515:2	0/1:2,170:31:172:0.988:2	./.	0/1:93,69:30:162:0.426:2
chr11	78380045	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:32:159:0.025:2	./.	./.	./.	./.
chr11	78380199	rs61745709	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,69:32:164:0.421:2
chr11	78399121	rs1792148	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:37,50:32:87:0.575:2	0/1:26,20:32:46:0.435:2	./.	0/1:61,71:31:132:0.538:2	0/1:73,71:32:144:0.493:2	0/1:55,71:31:126:0.563:2	./.	0/1:68,80:31:148:0.541:2	./.	./.	0/1:58,55:32:113:0.487:2
chr11	78437182	rs689369	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,75:31:171:0.439:2	./.	./.	./.	0/1:4,176:32:180:0.978:2	./.
chr11	78443586	rs17826919	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:31:14:0.429:2	./.	0/1:58,40:31:98:0.408:2	./.	./.	0/1:62,53:31:115:0.461:2	./.	./.	./.
chr11	78443605	rs141471364	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,23:31:67:0.343:2	./.	./.	./.	./.	./.
chr11	78482113	rs34863597	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,76:32:168:0.452:2	./.	0/1:53,41:32:94:0.436:2	./.	./.
chr11	78482155	rs116862565	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,50:32:121:0.413:2	./.	./.
chr11	78498022	rs11237621	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:29:6:0.500:2	./.	./.	./.	0/1:0,8:29:9:1.00:2	./.
chr11	78565314	rs17137261	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,10:32:17:0.588:2	./.	./.	./.	./.	./.
chr11	82443672	rs6592081	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:29:4:1.00:2	0/1:6,3:25:9:0.333:2	./.	./.	./.	./.	./.	0/1:5,3:31:8:0.375:2
chr11	82443817	rs2291793	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,6:23:10:0.600:2
chr11	82564294	rs2229437	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,93:32:185:0.503:2	./.	0/1:94,77:33:171:0.450:2	./.	./.
chr11	82643760	rs7947780	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,9:32:21:0.429:2	0/1:8,4:32:12:0.333:2	./.	0/1:0,14:32:14:1.00:2	0/1:12,6:31:18:0.333:2	0/1:14,11:32:25:0.440:2	./.	0/1:16,16:31:32:0.500:2	0/1:14,12:32:26:0.462:2	0/1:9,8:33:17:0.471:2	0/1:16,17:31:33:0.515:2
chr11	82644764	rs11826199	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,28:31:48:0.583:2	./.	./.	./.	./.
chr11	82644904	rs7130899	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,19:29:47:0.404:2	0/1:14,14:30:28:0.500:2	./.	0/1:1,38:29:39:0.974:2	0/1:14,19:29:33:0.576:2	0/1:25,21:29:46:0.457:2	0/1:0,40:29:40:1.00:2	0/1:33,16:30:49:0.327:2	0/1:0,41:30:41:1.00:2	0/1:25,12:27:37:0.324:2	0/1:28,18:30:46:0.391:2
chr11	82698804	rs147598434	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,53:31:121:0.438:2	./.	./.	./.	./.	./.
chr11	82875359	rs7130527	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,33:31:53:0.623:2	0/1:19,13:32:32:0.406:2	./.	./.	./.	0/1:37,25:30:62:0.403:2
chr11	82879761	rs74589009	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,22:32:61:0.361:2
chr11	82879960	rs116312789	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,77:30:168:0.464:2	./.	./.	./.	./.	./.
chr11	82880341	rs12284052	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,6:31:23:0.261:2	./.	./.	0/1:86,65:31:151:0.430:2	0/1:76,47:31:124:0.382:2	./.	./.	./.	0/1:90,99:31:189:0.524:2
chr11	82880732	rs17513642	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,8:31:10:0.800:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	82893488	rs144555497	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,69:33:123:0.561:2	./.
chr11	82895826	rs118001085	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:29:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	0/1:33,18:30:51:0.353:2
chr11	82973004	rs8789	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,10:33:30:0.333:2	0/1:19,6:32:25:0.240:2	0/1:0,2:31:2:1.00:2	0/1:25,32:33:57:0.561:2	./.	0/1:0,46:32:46:1.00:2	0/1:21,11:33:32:0.344:2	./.	0/1:26,17:34:43:0.395:2	0/1:14,13:33:27:0.481:2	0/1:0,70:33:70:1.00:2
chr11	82984985	rs543562	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:24,26:32:50:0.520:2	0/1:22,17:32:39:0.436:2	./.	0/1:30,14:31:44:0.318:2	./.	./.	./.	0/1:23,23:31:46:0.500:2	./.	./.	./.
chr11	82996986	rs494791	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:33:23:1.00:2	0/1:1,19:33:20:0.950:2	0/1:0,4:33:4:1.00:2	0/1:0,40:33:40:1.00:2	./.	0/1:0,34:33:34:1.00:2	0/1:13,16:31:29:0.552:2	0/1:20,9:33:29:0.310:2	0/1:16,11:34:27:0.407:2	0/1:7,24:33:31:0.774:2	0/1:1,35:32:36:0.972:2
chr11	83182726	rs34857356	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,23:31:36:0.639:2	./.	./.	./.	./.	./.
chr11	83673990	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:167,4:33:171:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr11	84996285	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:34:142:0.028:2	./.	./.
chr11	85366671	rs146573578	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,74:33:195:0.379:2	./.	./.	./.	./.
chr11	85407364	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr11	85420401	rs61740616	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,46:31:93:0.495:2
chr11	85435730	rs550404	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,30:32:56:0.536:2	0/1:22,20:32:42:0.476:2	./.	0/1:33,26:30:59:0.441:2	0/1:19,21:31:40:0.525:2	0/1:0,45:30:45:1.00:2	0/1:0,28:31:28:1.00:2	./.	0/1:46,28:33:74:0.378:2	0/1:51,30:32:81:0.370:2	0/1:0,63:31:63:1.00:2
chr11	85435991	rs115708955	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,48:33:83:0.578:2
chr11	85436352	rs641393	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,36:32:74:0.486:2	0/1:22,25:32:47:0.532:2	0/1:6,3:31:9:0.333:2	0/1:52,34:31:86:0.395:2	0/1:41,20:31:61:0.328:2	0/1:0,44:31:44:1.00:2	0/1:5,47:31:52:0.904:2	./.	0/1:33,40:33:73:0.548:2	0/1:39,27:30:66:0.409:2	0/1:58,46:32:104:0.442:2
chr11	85436394	rs556669	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,20:32:37:0.541:2	0/1:12,18:32:30:0.600:2	./.	0/1:26,12:31:38:0.316:2	0/1:12,5:30:17:0.294:2	0/1:0,24:31:24:1.00:2	0/1:2,15:32:17:0.882:2	./.	0/1:11,19:33:30:0.633:2	0/1:21,10:30:31:0.323:2	0/1:0,55:32:55:1.00:2
chr11	85436500	rs580459	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,22:32:35:0.629:2	0/1:19,9:31:28:0.321:2	./.	0/1:17,17:32:34:0.500:2	0/1:17,10:32:27:0.370:2	0/1:0,37:30:37:1.00:2	0/1:4,27:32:31:0.871:2	./.	0/1:26,19:33:45:0.422:2	0/1:14,20:32:34:0.588:2	0/1:0,62:31:62:1.00:2
chr11	85436699	rs598346	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,32:28:71:0.451:2	0/1:34,17:30:51:0.333:2	0/1:2,5:28:7:0.714:2	0/1:39,36:29:75:0.480:2	0/1:25,20:30:45:0.444:2	0/1:0,38:28:38:1.00:2	0/1:0,33:29:33:1.00:2	./.	0/1:1,82:30:83:0.988:2	0/1:40,29:29:69:0.420:2	0/1:0,89:30:89:1.00:2
chr11	85436868	rs597480	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,86:32:160:0.538:2	0/1:48,33:32:81:0.407:2	0/1:14,12:31:26:0.462:2	0/1:84,69:32:153:0.451:2	0/1:79,67:32:146:0.459:2	0/1:4,148:31:152:0.974:2	0/1:2,118:32:120:0.983:2	./.	0/1:107,86:33:193:0.446:2	0/1:92,84:32:176:0.477:2	0/1:107,86:32:193:0.446:2
chr11	85445061	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:155,13:33:168:0.077:2	./.	./.	./.	./.	./.	./.	./.
chr11	85445365	rs74718633	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,38:31:69:0.551:2	./.	./.	./.
chr11	85445734	rs35751209	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,62:29:164:0.378:2
chr11	85447611	rs680498	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:66,47:30:113:0.416:2	0/1:30,29:29:59:0.492:2	./.	0/1:54,44:30:98:0.449:2	0/1:41,22:28:63:0.349:2	0/1:0,111:29:111:1.00:2	0/1:0,53:30:53:1.00:2	./.	0/1:65,61:31:126:0.484:2	0/1:55,42:30:97:0.433:2	0/1:0,142:30:142:1.00:2
chr11	85456703	rs647912	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,55:33:114:0.482:2	0/1:33,32:32:65:0.492:2	0/1:6,11:32:17:0.647:2	0/1:66,45:33:111:0.405:2	0/1:66,68:32:134:0.507:2	0/1:2,107:32:109:0.982:2	0/1:1,115:33:116:0.991:2	./.	0/1:68,69:33:137:0.504:2	0/1:64,50:33:115:0.439:2	0/1:67,50:32:117:0.427:2
chr11	85627108	rs7927222	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,60:33:120:0.500:2	0/1:41,41:32:82:0.500:2	./.	./.	./.	./.	0/1:46,44:33:90:0.489:2	0/1:72,78:33:150:0.520:2
chr11	85692181	rs76719109	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,30:30:53:0.566:2	0/1:25,17:29:42:0.405:2	0/1:2,4:29:6:0.667:2	0/1:57,35:31:92:0.380:2	./.	0/1:54,32:29:87:0.372:2	0/1:0,43:29:43:1.00:2	0/1:0,67:30:67:1.00:2	./.	0/1:30,43:29:73:0.589:2	0/1:0,112:29:112:1.00:2
chr11	85718641	rs10792821	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:23,16:32:39:0.410:2	./.	./.	0/1:17,12:32:29:0.414:2	./.	./.	./.	./.	./.	./.	./.
chr11	85725937	rs592297	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,24:32:43:0.558:2	0/1:7,8:32:15:0.533:2	./.	0/1:0,36:32:36:1.00:2	0/1:12,11:31:23:0.478:2	0/1:30,11:30:41:0.268:2	0/1:0,25:31:25:1.00:2	0/1:0,40:32:40:1.00:2	./.	0/1:0,30:32:30:1.00:2	0/1:0,56:32:56:1.00:2
chr11	85968623	rs974144	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,25:33:59:0.424:2	0/1:14,20:32:34:0.588:2	0/1:0,8:33:8:1.00:2	0/1:47,35:32:82:0.427:2	0/1:34,16:32:50:0.320:2	0/1:36,36:32:72:0.500:2	./.	0/1:55,35:32:90:0.389:2	0/1:0,81:33:81:1.00:2	./.	0/1:62,49:33:111:0.441:2
chr11	86048506	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:34:119:0.034:2	./.	./.
chr11	86055668	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:32:125:0.032:2	./.	./.	./.
chr11	86055671	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:31:133:0.030:2	./.	./.	./.
chr11	86055672	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:31:133:0.030:2	./.	./.	./.
chr11	86086220	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:29:38:0.105:2	./.	./.	./.
chr11	86098680	rs292109	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,14:33:41:0.341:2	0/1:11,13:33:24:0.542:2	0/1:0,6:32:6:1.00:2	0/1:10,11:33:21:0.524:2	0/1:0,16:31:16:1.00:2	0/1:28,8:31:36:0.222:2	0/1:8,11:34:19:0.579:2	0/1:12,11:33:23:0.478:2	0/1:0,22:33:22:1.00:2	0/1:19,7:32:26:0.269:2	0/1:17,18:32:35:0.514:2
chr11	86103702	rs10501615	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,76:29:177:0.429:2	./.	./.	./.	./.	./.
chr11	86123464	rs11234644	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,4:28:17:0.235:2	./.	./.	./.	./.	./.	0/1:38,21:31:59:0.356:2
chr11	86123467	rs3741006	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,17:33:48:0.354:2	0/1:13,10:31:23:0.435:2	0/1:0,7:32:7:1.00:2	0/1:18,20:31:38:0.526:2	0/1:6,12:31:18:0.667:2	0/1:0,43:32:43:1.00:2	./.	./.	0/1:0,57:32:57:1.00:2	0/1:2,41:32:43:0.953:2	./.
chr11	86133705	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:31:95:0.042:2	./.	./.	./.	./.
chr11	86153911	rs7548	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,19:31:38:0.500:2	0/1:13,10:32:23:0.435:2	./.	0/1:18,32:29:50:0.640:2	0/1:20,15:30:35:0.429:2	0/1:30,17:31:47:0.362:2	./.	./.	0/1:0,56:31:56:1.00:2	0/1:0,31:31:31:1.00:2	./.
chr11	86157410	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:28:48:0.083:2	./.	./.
chr11	86158235	rs3182235	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,20:30:42:0.476:2	0/1:21,25:32:46:0.543:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,33:31:62:0.532:2
chr11	86159223	rs34662182	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:28,34:32:62:0.548:2	0/1:29,19:32:48:0.396:2	./.	0/1:55,55:31:110:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr11	86161388	rs1042780	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	0/1:62,43:31:105:0.410:2	0/1:0,83:31:83:1.00:2	./.	./.	0/1:0,77:32:77:1.00:2	0/1:0,83:31:83:1.00:2	./.
chr11	86209110	rs35059554	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,26:31:66:0.394:2	0/1:17,25:31:42:0.595:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,22:32:54:0.407:2
chr11	86267633	rs17211115	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,17:32:51:0.333:2	./.	0/1:46,31:31:77:0.403:2	0/1:44,25:32:69:0.362:2	./.	./.	./.
chr11	86267678	rs4943943	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,9:32:11:0.818:2	./.	./.	0/1:51,45:31:96:0.469:2	./.	./.	0/1:55,30:32:85:0.353:2	0/1:0,47:31:47:1.00:2	./.
chr11	86267714	rs12287767	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,47:30:94:0.500:2	./.	0/1:72,46:30:118:0.390:2	0/1:69,46:29:115:0.400:2	./.	./.	./.
chr11	86518835	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,5:31:128:0.039:2	./.	./.	./.	./.	./.
chr11	86520632	rs2155080	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,65:32:70:0.929:2	0/1:3,37:32:40:0.925:2	./.	./.	0/1:24,25:32:49:0.510:2	0/1:40,30:31:70:0.429:2	./.	0/1:41,42:32:83:0.506:2	0/1:48,49:32:97:0.505:2	0/1:30,37:31:67:0.552:2	0/1:63,42:32:105:0.400:2
chr11	86520752	rs2155081	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,53:32:54:0.981:2	0/1:4,33:32:37:0.892:2	./.	./.	0/1:23,10:30:33:0.303:2	0/1:42,32:31:74:0.432:2	./.	0/1:40,22:31:62:0.355:2	0/1:37,38:31:75:0.507:2	0/1:39,21:32:60:0.350:2	0/1:48,28:32:76:0.368:2
chr11	86521896	rs79270994	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,8:33:29:0.276:2	0/1:14,9:32:23:0.391:2	./.	./.	./.	0/1:28,17:32:45:0.378:2	./.	./.	0/1:28,21:33:49:0.429:2	./.	0/1:28,28:33:56:0.500:2
chr11	86662231	rs199577384	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,77:29:182:0.423:2
chr11	87013438	rs2276102	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,40:33:42:0.952:2	0/1:0,44:32:44:1.00:2	./.	0/1:32,35:33:67:0.522:2	0/1:2,41:32:43:0.953:2	./.	0/1:0,50:32:50:1.00:2	0/1:23,17:33:40:0.425:2	0/1:0,68:34:68:1.00:2	0/1:27,18:32:45:0.400:2	0/1:0,87:33:87:1.00:2
chr11	87032287	rs11235097	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:25,17:33:42:0.405:2	0/1:13,15:32:28:0.536:2	./.	./.	./.	./.	0/1:19,24:33:43:0.558:2	./.	./.	./.	./.
chr11	87908448	rs302646	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:32:67:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,134:32:134:1.00:2	0/1:3,178:31:181:0.983:2	0/1:0,156:32:156:1.00:2	0/1:86,105:33:191:0.550:2	0/1:3,165:32:169:0.982:2	0/1:0,123:33:123:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,77:32:77:1.00:2
chr11	88027209	rs3888798	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,25:29:40:0.625:2	./.	./.	./.
chr11	88027393	rs17594	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,27:28:105:0.257:2	./.	./.	./.
chr11	88045583	rs217086	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:0,22:33:22:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,51:32:51:1.00:2	0/1:38,52:32:90:0.578:2	0/1:0,83:32:83:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,58:33:58:1.00:2	./.	0/1:0,66:32:66:1.00:2
chr11	88242024	rs2941563	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:27:22:1.00:2	0/1:0,8:26:8:1.00:2	0/1:0,5:27:5:1.00:2	0/1:1,41:27:42:0.976:2	0/1:0,41:27:41:1.00:2	0/1:0,36:24:36:1.00:2	0/1:0,40:29:40:1.00:2	0/1:0,40:28:40:1.00:2	0/1:0,24:28:24:1.00:2	0/1:1,28:26:29:0.966:2	0/1:0,14:28:14:1.00:2
chr11	88300345	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,5:31:129:0.039:2	./.
chr11	88645129	rs626218	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,189:31:189:1.00:2	0/1:2,144:31:146:0.986:2	0/1:0,28:29:28:1.00:2	0/1:2,192:30:194:0.990:2	0/1:3,125:30:128:0.977:2	0/1:0,168:30:168:1.00:2	0/1:78,55:31:133:0.414:2	0/1:1,177:30:178:0.994:2	0/1:0,181:31:181:1.00:2	0/1:0,179:31:179:1.00:2	0/1:1,173:32:174:0.994:2
chr11	88645211	rs72643348	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,54:30:161:0.335:2	./.	./.	./.	./.
chr11	88780591	rs202089075	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,4:30:59:0.068:2	./.	./.	./.	./.	./.	./.
chr11	88780864	rs201888695	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:32:193:0.021:2	./.	./.	./.	./.	./.
chr11	88911696	rs1042602	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,30:31:61:0.492:2	0/1:18,21:32:39:0.538:2	0/1:0,7:31:7:1.00:2	0/1:0,67:31:67:1.00:2	0/1:2,59:30:62:0.967:2	0/1:31,48:31:79:0.608:2	./.	0/1:2,60:31:62:0.968:2	0/1:38,24:31:62:0.387:2	0/1:21,21:31:42:0.500:2	./.
chr11	89017961	rs1126809	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,35:32:61:0.574:2	0/1:25,18:32:43:0.419:2	./.	./.	./.	0/1:24,47:31:71:0.662:2	0/1:36,39:32:75:0.520:2	./.	0/1:57,66:33:123:0.537:2	0/1:38,43:31:81:0.531:2	0/1:0,114:32:114:1.00:2
chr11	89069066	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.	./.	./.
chr11	89069068	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.	./.	./.
chr11	89073234	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,4:32:101:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr11	89088168	rs75735530	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,45:33:126:0.357:2	0/1:90,53:33:143:0.371:2	./.	./.	./.
chr11	89133449	rs317139	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,182:31:182:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,173:30:173:1.00:2	0/1:0,149:30:149:1.00:2	0/1:0,166:30:166:1.00:2	0/1:0,181:31:181:1.00:2	0/1:0,182:31:182:1.00:2	0/1:0,181:32:181:1.00:2	0/1:2,175:31:177:0.989:2	0/1:0,181:32:181:1.00:2
chr11	89133450	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,5:29:186:0.027:2	./.
chr11	89403597	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,9:32:197:0.046:2
chr11	89405142	rs3018757	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:184,5:32:189:0.026:2	./.	./.	./.	./.	./.	./.
chr11	89409275	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:183,4:34:187:0.021:2	./.	./.	./.	./.	./.	./.
chr11	89413781	rs10830339	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,60:32:63:0.952:2	0/1:0,33:32:33:1.00:2	0/1:0,10:32:10:1.00:2	0/1:4,61:32:65:0.938:2	./.	0/1:5,70:32:75:0.933:2	./.	0/1:81,29:32:110:0.264:2	0/1:81,29:33:110:0.264:2	0/1:58,26:32:84:0.310:2	0/1:105,38:33:144:0.266:2
chr11	89413850	rs10830340	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,82:32:85:0.965:2	0/1:0,58:32:58:1.00:2	0/1:0,16:31:16:1.00:2	0/1:2,95:31:97:0.979:2	./.	0/1:0,101:31:101:1.00:2	./.	0/1:102,37:31:139:0.266:2	0/1:98,35:32:133:0.263:2	0/1:83,46:31:129:0.357:2	0/1:114,56:33:170:0.329:2
chr11	89431695	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:146,5:30:151:0.033:2	./.	./.	./.	./.	./.	./.
chr11	89431712	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:121,5:28:126:0.040:2	./.	./.	./.	./.	./.	./.
chr11	89443808	rs11018745	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:33:30:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,3:33:3:1.00:2	0/1:0,19:32:19:1.00:2	./.	0/1:0,35:32:35:1.00:2	./.	0/1:24,9:32:33:0.273:2	0/1:14,18:33:32:0.563:2	0/1:18,13:32:31:0.419:2	0/1:18,18:34:36:0.500:2
chr11	89447375	rs17221124	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:34,29:33:63:0.460:2	0/1:10,14:32:24:0.583:2	./.	0/1:37,24:31:61:0.393:2	./.	0/1:30,14:31:44:0.318:2	./.	./.	./.	0/1:20,16:32:36:0.444:2	./.
chr11	89531446	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:31:147:0.027:2	./.	0/1:188,7:30:195:0.036:2	0/1:120,5:31:125:0.040:2	./.	./.
chr11	89531533	rs146898780	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,5:31:173:0.029:2	./.	0/1:73,8:33:81:0.099:2	0/1:55,3:34:58:0.052:2	./.
chr11	89531540	rs12417980	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,146:32:148:0.993:2	0/1:1,94:32:95:0.989:2	0/1:0,13:31:13:1.00:2	0/1:1,92:31:93:0.989:2	./.	0/1:0,104:31:104:1.00:2	./.	0/1:124,31:30:155:0.200:2	0/1:12,56:32:68:0.824:2	0/1:4,50:31:54:0.926:2	0/1:77,60:32:138:0.438:2
chr11	89531619	rs11824402	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,10:28:93:0.108:2	./.	0/1:46,17:30:63:0.270:2	0/1:36,20:28:56:0.357:2	./.
chr11	89531764	rs201172121	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:71,8:33:80:0.101:2	0/1:68,4:30:72:0.056:2	./.	./.	./.	./.	0/1:116,5:26:121:0.041:2	./.	0/1:72,5:32:77:0.065:2	./.	./.
chr11	89531780	rs149578071	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,6:29:79:0.076:2	./.	./.	./.	./.
chr11	89534173	rs202153712	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,9:24:109:0.083:2	./.	./.	./.
chr11	89534191	rs371223840	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,20:31:75:0.267:2	0/1:76,34:32:110:0.309:2	./.	./.	./.
chr11	89534940	.	A	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:193,4:32:197:0.020:2	./.	0/1:183,11:33:194:0.057:2	./.	0/1:191,5:33:197:0.026:2	./.	./.	0/1:189,7:34:197:0.036:2	./.	0/1:187,5:34:192:0.026:2
chr11	89534945	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:188,5:35:193:0.026:2	./.	./.	0/1:191,5:34:196:0.026:2	./.	0/1:192,6:33:198:0.030:2	0/1:192,4:33:196:0.020:2	./.	./.	0/1:192,7:32:199:0.035:2	0/1:188,4:33:193:0.021:2
chr11	89535074	.	T	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:195,4:32:199:0.020:2	0/1:172,4:33:176:0.023:2	0/1:175,10:32:185:0.054:2	./.	./.	0/1:189,6:33:195:0.031:2	0/1:177,11:33:188:0.059:2	0/1:194,4:32:198:0.020:2
chr11	89535088	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:154,4:35:158:0.025:2	./.	./.	./.	./.	./.	./.
chr11	89537258	rs143084203	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,33:31:150:0.220:2
chr11	89537332	rs368453739	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:135,4:34:140:0.029:2	0/1:96,8:32:104:0.077:2	./.	0/1:114,9:33:123:0.073:2	./.	0/1:118,7:33:125:0.056:2	./.	0/1:108,9:32:117:0.077:2	0/1:124,6:33:130:0.046:2	0/1:121,7:31:128:0.055:2	0/1:135,13:31:149:0.088:2
chr11	89537399	rs201177336	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:33:194:0.026:2	./.	./.	./.	./.	./.
chr11	89537413	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,4:35:194:0.021:2	./.	0/1:188,5:33:193:0.026:2	./.	./.	./.	./.	./.
chr11	89537440	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:177,7:32:185:0.038:2	./.	./.	./.	./.	./.	0/1:189,5:31:194:0.026:2	0/1:182,4:32:186:0.022:2	./.	./.	./.
chr11	89537496	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:31:158:0.025:2	./.	./.	./.
chr11	89537527	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:31:155:0.026:2	./.	./.	./.
chr11	89577934	.	A	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,102:33:189:0.540:2	0/1:83,50:33:133:0.376:2	0/1:10,9:31:19:0.474:2	0/1:108,78:32:186:0.419:2	0/1:115,29:31:145:0.201:2	0/1:85,103:32:188:0.548:2	./.	0/1:142,45:32:187:0.241:2	0/1:98,94:34:192:0.490:2	0/1:143,30:31:174:0.173:2	0/1:150,42:33:192:0.219:2
chr11	89577989	.	C	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:31,17:31:48:0.354:2	0/1:140,42:31:182:0.231:2	./.	0/1:108,60:31:168:0.357:2	./.	0/1:153,23:32:176:0.131:2	0/1:99,75:32:174:0.431:2	0/1:158,31:32:189:0.164:2	0/1:138,36:32:174:0.207:2
chr11	89577995	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:107,77:32:185:0.418:2	0/1:113,66:31:179:0.369:2	0/1:34,14:32:48:0.292:2	0/1:111,69:32:180:0.383:2	0/1:152,33:31:185:0.178:2	0/1:77,86:31:163:0.528:2	0/1:150,33:32:183:0.180:2	0/1:96,68:32:165:0.415:2	0/1:89,83:32:172:0.483:2	0/1:159,32:32:191:0.168:2	0/1:153,27:32:181:0.150:2
chr11	89578010	rs201016081	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:107,81:28:188:0.431:2	0/1:111,71:28:182:0.390:2	0/1:52,14:29:66:0.212:2	0/1:112,69:28:181:0.381:2	0/1:104,81:28:185:0.438:2	0/1:98,80:28:178:0.449:2	0/1:153,37:27:190:0.195:2	0/1:107,74:28:181:0.409:2	0/1:101,80:28:181:0.442:2	0/1:106,77:28:183:0.421:2	0/1:98,91:28:189:0.481:2
chr11	89578018	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:113,73:32:186:0.392:2	0/1:108,72:31:180:0.400:2	0/1:62,16:32:78:0.205:2	0/1:105,78:32:183:0.426:2	0/1:153,31:32:184:0.168:2	0/1:103,79:32:182:0.434:2	0/1:152,37:32:189:0.196:2	0/1:109,78:32:187:0.417:2	0/1:104,79:33:183:0.432:2	0/1:157,33:32:190:0.174:2	0/1:155,33:32:188:0.176:2
chr11	89578046	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,10:32:190:0.053:2	0/1:186,8:30:194:0.041:2	./.	./.	./.
chr11	89578056	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,13:33:194:0.067:2	0/1:189,7:34:196:0.036:2	./.	./.	./.
chr11	89578127	.	G	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:149,45:33:194:0.232:2	0/1:155,43:32:198:0.217:2	0/1:142,47:32:189:0.249:2	0/1:110,87:33:197:0.442:2	0/1:164,34:32:198:0.172:2	0/1:114,82:33:196:0.418:2	0/1:163,33:34:197:0.168:2	0/1:111,84:33:195:0.431:2	0/1:123,74:35:197:0.376:2	0/1:155,42:33:197:0.213:2	0/1:157,34:33:191:0.178:2
chr11	89578149	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:33:196:0.020:2	./.	./.	./.
chr11	89578241	rs200858583	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:99,79:31:178:0.444:2	0/1:82,88:31:170:0.518:2	0/1:33,6:33:39:0.154:2	0/1:69,61:31:130:0.469:2	0/1:48,61:31:109:0.560:2	0/1:85,71:32:156:0.455:2	0/1:89,32:32:121:0.264:2	0/1:65,54:32:119:0.454:2	0/1:81,70:33:151:0.464:2	0/1:45,100:32:145:0.690:2	0/1:37,118:32:155:0.761:2
chr11	89578666	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,5:32:197:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr11	89648197	.	A	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:128,64:32:192:0.333:2	0/1:106,92:32:198:0.465:2	0/1:61,54:31:115:0.470:2	0/1:134,63:31:197:0.320:2	0/1:109,81:31:190:0.426:2	0/1:14,182:31:196:0.929:2	0/1:120,80:31:200:0.400:2	0/1:126,71:31:197:0.360:2	0/1:5,185:32:190:0.974:2	0/1:13,180:31:193:0.933:2	0/1:14,179:32:193:0.927:2
chr11	89648203	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,7:32:198:0.036:2	./.	0/1:191,5:33:196:0.026:2	./.	0/1:189,7:32:196:0.036:2	./.	./.	./.
chr11	89648292	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:180,6:28:186:0.032:2	./.	./.	./.	./.	./.	./.
chr11	89662510	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,5:33:199:0.025:2	./.	./.	./.	./.
chr11	89662516	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,8:30:197:0.041:2
chr11	89662605	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:32:193:0.026:2	./.	./.	./.
chr11	89662611	rs200275703	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:107,85:32:192:0.443:2	0/1:129,67:32:196:0.342:2	0/1:70,41:31:111:0.369:2	0/1:125,74:32:199:0.372:2	0/1:124,72:30:196:0.367:2	0/1:4,188:31:193:0.979:2	0/1:113,77:31:190:0.405:2	0/1:117,79:31:196:0.403:2	0/1:1,193:32:194:0.995:2	0/1:5,189:32:194:0.974:2	0/1:3,188:32:191:0.984:2
chr11	89665555	rs201106937	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,11:30:16:0.688:2	./.	./.	./.	./.
chr11	89701844	rs145750208	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,3:33:5:0.600:2	./.	0/1:178,13:33:191:0.068:2	0/1:102,7:32:110:0.064:2	./.	./.	./.
chr11	89701891	rs200797811	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,43:33:126:0.344:2	0/1:17,73:32:90:0.811:2	./.	./.	./.
chr11	89701958	rs201411460	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,15:26:39:0.385:2	0/1:15,6:26:21:0.286:2	./.	./.	0/1:15,4:28:19:0.211:2
chr11	89702651	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,3:32:14:0.214:2	./.	./.	./.	./.	./.	./.	./.
chr11	89702695	rs371823755	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,3:31:3:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.
chr11	89704428	rs183559458	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	0/1:0,3:32:3:1.00:2	0/1:0,2:30:2:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,2:32:3:1.00:2	0/1:0,3:33:3:1.00:2
chr11	89704437	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	89706582	rs202214619	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:165,33:33:198:0.167:2	0/1:153,45:32:198:0.227:2	./.	./.	./.	./.	./.	./.
chr11	89706825	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,6:32:104:0.058:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	89706921	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	0/1:0,3:35:3:1.00:2	./.	./.	0/1:0,2:30:2:1.00:2
chr11	89732175	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:157,5:32:163:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr11	89732600	rs201270123	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:100,90:32:190:0.474:2	0/1:92,102:31:195:0.526:2	0/1:31,6:31:37:0.162:2	0/1:114,86:32:200:0.430:2	0/1:64,115:31:179:0.642:2	0/1:111,88:31:199:0.442:2	0/1:142,37:32:179:0.207:2	0/1:118,76:31:195:0.392:2	0/1:98,97:33:195:0.497:2	0/1:56,137:32:193:0.710:2	0/1:51,137:32:188:0.729:2
chr11	89732714	rs201822208	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:148,46:33:194:0.237:2	0/1:143,53:33:196:0.270:2	0/1:143,45:33:188:0.239:2	0/1:81,110:34:191:0.576:2	0/1:151,42:33:193:0.218:2	0/1:103,96:33:199:0.482:2	0/1:146,43:33:189:0.228:2	0/1:104,82:33:187:0.441:2	0/1:102,96:34:198:0.485:2	0/1:155,39:33:194:0.201:2	0/1:138,48:34:186:0.258:2
chr11	89732785	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:32:174:0.023:2	0/1:177,11:32:188:0.059:2	./.	./.	./.
chr11	89732795	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,8:31:184:0.043:2	./.	./.	./.
chr11	89732823	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:102,57:32:159:0.358:2	0/1:106,79:31:186:0.427:2	0/1:39,8:32:47:0.170:2	0/1:101,79:32:180:0.439:2	0/1:166,21:31:188:0.112:2	0/1:86,59:31:145:0.407:2	0/1:161,29:32:190:0.153:2	0/1:118,61:32:179:0.341:2	0/1:97,67:33:164:0.409:2	0/1:155,28:32:183:0.153:2	0/1:146,38:32:185:0.207:2
chr11	89732831	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:111,53:28:164:0.323:2	0/1:106,80:27:186:0.430:2	0/1:34,7:28:41:0.171:2	0/1:89,72:28:161:0.447:2	0/1:124,61:28:185:0.330:2	0/1:81,51:28:132:0.386:2	0/1:159,28:28:187:0.150:2	0/1:105,62:28:168:0.371:2	0/1:93,59:29:152:0.388:2	0/1:97,87:28:184:0.473:2	0/1:101,83:29:184:0.451:2
chr11	89732846	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:105,61:32:166:0.367:2	0/1:96,84:32:180:0.467:2	0/1:29,7:31:36:0.194:2	0/1:95,80:32:175:0.457:2	0/1:160,22:32:182:0.121:2	0/1:75,70:32:145:0.483:2	0/1:156,34:31:190:0.179:2	0/1:113,74:32:188:0.396:2	0/1:96,65:32:161:0.404:2	0/1:152,28:32:180:0.156:2	0/1:159,28:32:187:0.150:2
chr11	89732852	.	G	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,11:31:34:0.324:2	0/1:136,44:32:180:0.244:2	./.	0/1:86,66:30:152:0.434:2	./.	0/1:144,41:31:185:0.222:2	0/1:77,86:32:163:0.528:2	0/1:158,27:31:185:0.146:2	0/1:155,32:31:187:0.171:2
chr11	89819273	rs201374409	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,42:29:174:0.241:2	./.	./.	./.
chr11	89819304	rs200529838	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,48:32:169:0.286:2	./.
chr11	89819380	rs75726606	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,5:32:45:0.111:2	./.
chr11	89819403	rs200131392	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,16:29:19:0.842:2	0/1:41,12:29:53:0.226:2	./.	./.	./.
chr11	89819438	rs79837451	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,10:32:15:0.667:2	0/1:54,6:31:60:0.100:2	./.	./.	./.
chr11	89819833	rs200741634	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,11:33:16:0.688:2	0/1:0,9:32:9:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	89819885	rs201853154	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:33:5:0.600:2	0/1:9,10:30:19:0.526:2	./.	./.	./.
chr11	89820267	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,5:29:12:0.417:2	./.	./.
chr11	89868755	rs10734123	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,26:32:30:0.867:2	0/1:25,22:31:47:0.468:2	./.	0/1:23,13:31:36:0.361:2	./.
chr11	89880604	rs11018879	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,32:32:65:0.492:2	./.
chr11	89882185	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:194,6:30:200:0.030:2	./.	./.	./.	./.	./.	0/1:193,5:31:198:0.025:2	./.
chr11	89882194	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,5:30:199:0.025:2	./.
chr11	89916080	rs9804632	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,51:32:54:0.944:2	0/1:36,29:32:65:0.446:2	./.	0/1:31,27:33:58:0.466:2	./.
chr11	89935586	rs1045861	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:113,69:32:182:0.379:2	0/1:61,47:32:108:0.435:2	0/1:0,20:31:20:1.00:2	0/1:190,5:30:195:0.026:2	0/1:76,74:31:150:0.493:2	./.	0/1:1,154:31:157:0.994:2	0/1:117,76:31:193:0.394:2	0/1:114,79:32:193:0.409:2	0/1:104,95:31:199:0.477:2	0/1:5,182:32:187:0.973:2
chr11	89938659	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,6:32:159:0.038:2	./.	./.	./.
chr11	89938664	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:33:129:0.031:2	./.
chr11	89939448	rs1943381	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:30,21:33:51:0.412:2	0/1:17,5:30:22:0.227:2	0/1:0,4:32:4:1.00:2	./.	0/1:10,12:31:23:0.545:2	./.	0/1:0,21:32:21:1.00:2	0/1:8,15:33:23:0.652:2	0/1:16,26:33:42:0.619:2	0/1:25,7:33:33:0.219:2	0/1:3,57:33:60:0.950:2
chr11	89947263	rs3203992	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:34:128:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	89947335	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:33:98:0.041:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	92086513	rs10830902	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,23:32:59:0.390:2	0/1:21,16:30:37:0.432:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	92086649	rs10830903	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,20:32:46:0.435:2	0/1:17,20:33:37:0.541:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	92088177	rs7479732	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,37:31:69:0.536:2	0/1:27,19:31:46:0.413:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	92088312	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,4:32:188:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr11	92531356	rs7949157	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,98:30:98:1.00:2	0/1:0,69:30:69:1.00:2	./.	0/1:1,125:30:126:0.992:2	0/1:1,92:29:93:0.989:2	0/1:1,107:29:108:0.991:2	0/1:1,143:30:144:0.993:2	0/1:2,121:30:123:0.984:2	0/1:0,137:30:137:1.00:2	0/1:0,92:30:92:1.00:2	0/1:0,161:30:161:1.00:2
chr11	92532677	rs12362722	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,53:32:54:0.981:2	0/1:1,36:33:37:0.973:2	./.	0/1:0,70:32:70:1.00:2	0/1:0,53:32:53:1.00:2	0/1:1,69:32:70:0.986:2	0/1:0,80:32:80:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,57:33:57:1.00:2
chr11	92533057	rs16918105	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,58:33:118:0.492:2	./.	./.
chr11	92533378	rs191031398	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,17:31:35:0.486:2	./.	./.	./.
chr11	92533558	rs200944979	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,39:33:82:0.476:2	./.	./.	./.	./.	./.	./.	./.
chr11	92534442	rs3847531	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,55:27:56:0.982:2	0/1:0,25:28:25:1.00:2	./.	0/1:1,71:28:72:0.986:2	0/1:0,53:28:53:1.00:2	0/1:0,60:29:60:1.00:2	0/1:1,37:29:38:0.974:2	0/1:0,59:29:59:1.00:2	0/1:0,63:29:63:1.00:2	0/1:0,58:29:58:1.00:2	0/1:0,62:29:62:1.00:2
chr11	92535012	rs187454400	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,37:31:91:0.407:2	./.	./.
chr11	92538405	rs62622785	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,34:32:74:0.459:2	./.	./.	0/1:28,35:31:63:0.556:2	./.
chr11	92568196	rs374591402	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,7:31:135:0.052:2	./.
chr11	92573911	rs10765565	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,38:31:101:0.376:2	./.	0/1:75,39:31:114:0.342:2	0/1:78,60:32:138:0.435:2	0/1:52,70:33:122:0.574:2	0/1:68,39:33:108:0.364:2	0/1:69,47:31:116:0.405:2
chr11	92590448	rs4753069	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,30:30:56:0.536:2	0/1:14,23:30:37:0.622:2	./.	0/1:51,58:30:109:0.532:2	0/1:0,94:30:94:1.00:2	0/1:1,74:29:75:0.987:2	0/1:0,102:30:102:1.00:2	0/1:2,89:30:91:0.978:2	0/1:0,86:30:86:1.00:2	0/1:1,76:30:77:0.987:2	0/1:0,70:30:70:1.00:2
chr11	92623877	rs12277422	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,30:33:56:0.536:2	0/1:19,27:32:46:0.587:2	0/1:26,25:31:51:0.490:2	./.	0/1:38,27:32:65:0.415:2	0/1:29,26:33:55:0.473:2	0/1:20,23:33:43:0.535:2	./.
chr11	92623946	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:31:70:0.057:2	./.	./.	./.	./.
chr11	92714801	rs61746674	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,8:33:17:0.471:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	92895920	rs78676517	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,48:30:99:0.485:2	0/1:32,28:29:60:0.467:2	./.	./.	./.	0/1:2,100:29:102:0.980:2	./.	./.	./.	./.	./.
chr11	92901249	rs143001920	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,32:29:59:0.542:2	./.	./.	./.	./.
chr11	92918863	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,6:32:57:0.105:2	./.
chr11	93129483	rs12288277	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,26:29:64:0.406:2	./.	./.	0/1:22,17:30:39:0.436:2	./.	./.	0/1:29,33:28:62:0.532:2	0/1:59,43:29:102:0.422:2
chr11	93129484	rs12282288	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,26:31:64:0.406:2	./.	./.	0/1:22,17:31:39:0.436:2	./.	./.	0/1:29,33:30:62:0.532:2	0/1:58,43:30:101:0.426:2
chr11	93141580	rs2259633	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:32:45:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,5:31:5:1.00:2	0/1:2,46:31:48:0.958:2	0/1:27,12:31:39:0.308:2	0/1:31,16:31:47:0.340:2	0/1:0,28:32:28:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,42:33:42:1.00:2	0/1:37,10:32:47:0.213:2	0/1:0,77:32:77:1.00:2
chr11	93148179	rs61747195	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,57:30:137:0.416:2	./.	./.	./.	./.	./.
chr11	93212245	rs3207348	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,41:31:82:0.500:2	0/1:36,28:30:64:0.438:2	./.	./.
chr11	93212254	rs2658797	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,6:29:8:0.750:2	0/1:42,37:29:79:0.468:2	0/1:46,37:29:83:0.446:2	0/1:27,27:29:54:0.500:2	0/1:36,55:29:91:0.604:2	./.	./.	0/1:0,48:30:48:1.00:2	0/1:0,50:30:50:1.00:2
chr11	93400796	rs67112133	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,30:32:62:0.484:2	./.	./.	./.	./.
chr11	93402006	rs61743303	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,33:29:68:0.485:2	./.	./.	./.	./.
chr11	93402096	rs1944101	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:32:43:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,44:33:44:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,59:32:59:1.00:2
chr11	93408831	rs10831088	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,83:33:83:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,79:32:80:1.00:2	0/1:2,87:32:89:0.978:2	0/1:0,77:33:77:1.00:2	0/1:0,67:33:67:1.00:2	0/1:1,112:32:113:0.991:2
chr11	93425159	rs4753495	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,157:32:157:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,160:32:160:1.00:2	0/1:0,123:31:123:1.00:2	0/1:1,151:31:152:0.993:2	0/1:0,145:32:145:1.00:2	0/1:1,157:32:158:0.994:2	0/1:0,167:32:167:1.00:2	0/1:0,172:32:172:1.00:2	0/1:0,159:32:159:1.00:2
chr11	93430649	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,4:31:52:0.077:2	./.	./.	./.	./.	./.	./.
chr11	93430966	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,24:32:56:0.429:2	./.	./.	./.	./.
chr11	93431992	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:33:88:0.045:2	./.	./.	./.	./.	./.
chr11	93454524	rs17651231	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:28:16:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	93457532	rs78544176	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,21:32:45:0.467:2	0/1:41,22:33:63:0.349:2	./.	0/1:36,36:32:72:0.500:2
chr11	93460160	rs67879380	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,44:33:113:0.389:2	./.	./.	./.	./.
chr11	93462607	rs7131178	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:31:39:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,74:31:74:1.00:2
chr11	93469419	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,56:32:95:0.589:2	./.	./.	./.
chr11	93517874	rs7116967	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,5:32:5:1.00:2	0/1:8,11:32:19:0.579:2	./.	0/1:5,6:31:11:0.545:2	./.	0/1:0,6:33:6:1.00:2	0/1:2,3:29:5:0.600:2
chr11	93517886	rs2848477	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:33:3:1.00:2	0/1:0,2:31:2:1.00:2	0/1:3,4:32:7:0.571:2	./.	0/1:1,3:32:4:0.750:2	./.	0/1:0,2:32:2:1.00:2	./.
chr11	93529655	rs34057693	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,28:33:54:0.519:2	0/1:10,21:32:31:0.677:2	./.	0/1:26,22:33:48:0.458:2	./.	./.	./.	./.
chr11	93535027	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,10:18:121:0.083:2
chr11	93542936	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:34:138:0.029:2	./.	./.
chr11	93583590	rs11020541	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,18:32:32:0.563:2	./.	./.	./.	./.	0/1:16,12:33:28:0.429:2	./.	./.
chr11	93797619	rs1945783	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:30:86:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,8:29:8:1.00:2	0/1:2,141:30:143:0.986:2	0/1:0,61:29:61:1.00:2	0/1:0,105:30:105:1.00:2	0/1:1,93:30:95:0.989:2	0/1:0,111:30:111:1.00:2	0/1:0,126:30:126:1.00:2	0/1:0,87:30:87:1.00:2	0/1:0,118:30:118:1.00:2
chr11	93822102	rs116956001	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,30:29:65:0.462:2	./.	./.	./.	./.	./.
chr11	93844087	rs139585459	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,20:32:44:0.455:2	0/1:19,11:32:30:0.367:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	93862493	rs1138800	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,40:31:92:0.435:2	0/1:55,58:31:114:0.513:2	0/1:1,114:31:116:0.991:2	0/1:0,98:31:98:1.00:2	0/1:63,58:31:121:0.479:2	0/1:45,38:33:83:0.458:2	0/1:32,36:32:68:0.529:2	0/1:0,61:32:61:1.00:2
chr11	93911563	rs184999372	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:33:147:0.027:2	./.
chr11	93913036	rs12793348	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,33:29:66:0.500:2	0/1:20,19:29:39:0.487:2	./.	0/1:48,31:30:79:0.392:2	0/1:36,37:29:73:0.507:2	./.	./.	0/1:63,29:28:92:0.315:2	./.	./.	0/1:29,25:29:54:0.463:2
chr11	94113466	rs3740868	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,75:30:183:0.410:2	./.	./.	0/1:77,83:31:160:0.519:2	./.	./.	./.	./.
chr11	94113834	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:120,5:30:125:0.040:2	./.	./.	./.	./.	./.	./.
chr11	94199710	rs11020790	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,11:31:37:0.297:2
chr11	94199721	rs13447640	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,12:31:32:0.375:2
chr11	94225920	rs497763	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,17:31:39:0.436:2	0/1:4,8:32:12:0.667:2	./.	0/1:24,15:30:39:0.385:2	0/1:0,20:30:20:1.00:2	0/1:29,24:30:53:0.453:2	0/1:12,14:28:26:0.538:2	0/1:0,53:30:53:1.00:2	0/1:31,12:32:43:0.279:2	./.	0/1:22,18:31:40:0.450:2
chr11	94225953	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:31:69:0.058:2	./.	./.	./.	./.	./.
chr11	94225961	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:31:70:0.057:2	./.	./.	./.	./.	./.
chr11	94225999	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:31:44:0.091:2	./.	./.	./.	./.	./.
chr11	94231257	rs2509943	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,4:33:23:0.174:2	0/1:6,7:33:13:0.538:2	0/1:0,4:33:4:1.00:2	0/1:10,13:32:23:0.565:2	./.	0/1:15,8:32:23:0.348:2	0/1:12,9:31:21:0.429:2	./.	0/1:16,19:31:35:0.543:2	0/1:0,7:32:7:1.00:2	0/1:11,12:32:23:0.522:2
chr11	94231639	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:32:158:0.025:2	./.	./.	./.	./.	./.
chr11	94231675	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:32:147:0.027:2	./.	./.	./.	./.	./.
chr11	94278713	rs2230274	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,38:31:104:0.365:2	0/1:5,87:31:92:0.946:2	./.	./.	./.	0/1:29,29:33:58:0.500:2
chr11	94279266	rs7116255	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,60:32:120:0.500:2
chr11	94280189	rs10831240	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,91:32:183:0.500:2
chr11	94281011	rs12800677	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,41:33:90:0.456:2
chr11	94282014	rs10741490	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,24:32:56:0.429:2	0/1:1,37:32:38:0.974:2	0/1:21,12:33:33:0.364:2	0/1:26,20:33:46:0.435:2	./.	0/1:0,86:33:86:1.00:2
chr11	94282464	rs12805587	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,34:32:70:0.486:2
chr11	94300720	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:30:94:0.043:2	./.	./.
chr11	94320237	rs7110167	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,15:31:25:0.600:2	./.	0/1:16,14:31:30:0.467:2	0/1:0,26:31:27:1.00:2	0/1:15,18:31:33:0.545:2	0/1:13,20:32:33:0.606:2	./.	0/1:17,16:32:33:0.485:2
chr11	94322352	rs11020845	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,80:31:157:0.510:2	0/1:53,57:32:110:0.518:2	./.	./.
chr11	94322353	rs11020846	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,79:31:156:0.506:2	0/1:53,57:32:110:0.518:2	./.	./.
chr11	94326765	rs57607909	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,49:32:104:0.471:2	0/1:49,51:33:100:0.510:2	./.	./.
chr11	94335077	rs624184	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,32:32:91:0.352:2	./.	0/1:46,59:32:105:0.562:2	0/1:0,113:32:113:1.00:2	./.	./.	./.	0/1:100,59:33:159:0.371:2
chr11	94337220	rs593690	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,31:32:77:0.403:2	./.	0/1:44,33:31:77:0.429:2	0/1:4,39:32:43:0.907:2	0/1:44,27:31:71:0.380:2	0/1:44,42:33:86:0.488:2	0/1:37,34:32:71:0.479:2	0/1:64,43:32:107:0.402:2
chr11	94351167	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,36:29:152:0.237:2
chr11	94501751	rs192694640	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,13:30:29:0.448:2	./.	./.	./.	./.
chr11	94533373	rs2303960	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:32:9:0.667:2	./.	0/1:0,58:32:58:1.00:2	./.	./.	./.	./.	./.	./.
chr11	94602414	rs11020968	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,4:26:15:0.267:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	94731069	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:32:60:0.067:2	./.	./.	./.
chr11	94731376	rs17617964	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,42:30:87:0.483:2	./.	./.	./.	./.	./.	./.	./.
chr11	94731759	rs3740853	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:19,23:31:42:0.548:2	0/1:17,7:33:24:0.292:2	./.	0/1:31,29:30:60:0.483:2	./.	./.	./.	0/1:41,42:32:83:0.506:2	./.	0/1:22,21:32:43:0.488:2	./.
chr11	94732407	rs1054532	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,12:32:18:0.667:2	./.	0/1:2,175:31:177:0.989:2	./.	./.	./.	./.	./.	0/1:107,84:32:191:0.440:2
chr11	94732524	rs34091389	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,85:31:151:0.574:2
chr11	94800441	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,58:30:108:0.537:2	./.
chr11	94802318	rs1056986	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,17:33:17:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,2:30:2:1.00:2	./.	0/1:18,11:31:29:0.379:2	0/1:0,39:31:39:1.00:2	0/1:12,16:32:28:0.571:2	0/1:16,6:31:22:0.273:2	0/1:19,20:32:39:0.513:2	0/1:16,13:32:29:0.448:2	0/1:0,36:31:36:1.00:2
chr11	94802620	rs12627	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,28:32:28:1.00:2	0/1:0,16:31:16:1.00:2	./.	./.	0/1:6,9:31:15:0.600:2	0/1:0,20:30:20:1.00:2	0/1:17,12:31:29:0.414:2	0/1:17,8:31:25:0.320:2	0/1:22,16:32:38:0.421:2	0/1:12,9:31:21:0.429:2	0/1:0,21:32:21:1.00:2
chr11	94802776	rs681695	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,62:33:63:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,6:33:6:1.00:2	./.	0/1:27,25:32:52:0.481:2	0/1:1,55:33:56:0.982:2	0/1:41,15:33:56:0.268:2	0/1:46,20:33:66:0.303:2	0/1:48,36:33:84:0.429:2	0/1:25,27:32:52:0.519:2	0/1:0,63:33:63:1.00:2
chr11	94802863	rs78054640	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,5:31:11:0.455:2	0/1:15,12:33:27:0.444:2
chr11	94802952	rs681134	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,37:30:37:1.00:2	0/1:1,7:25:8:0.875:2	./.	./.	0/1:16,15:30:31:0.484:2	0/1:0,38:29:38:1.00:2	0/1:20,26:30:46:0.565:2	0/1:8,12:30:20:0.600:2	0/1:17,20:29:37:0.541:2	0/1:7,10:31:17:0.588:2	0/1:1,36:29:37:0.973:2
chr11	94803043	rs680673	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,23:32:23:1.00:2	0/1:1,11:32:12:0.917:2	0/1:0,4:29:4:1.00:2	./.	0/1:16,13:30:29:0.448:2	0/1:0,20:30:20:1.00:2	0/1:14,21:30:35:0.600:2	0/1:16,7:30:23:0.304:2	0/1:20,14:31:36:0.412:2	0/1:11,9:29:20:0.450:2	0/1:0,29:31:29:1.00:2
chr11	94803525	rs1267145	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:33:3:1.00:2	./.	./.	./.	0/1:0,4:35:4:1.00:2	0/1:0,5:32:5:1.00:2	./.	./.	./.	./.	0/1:0,12:33:12:1.00:2
chr11	94803548	rs201925344	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,6:17:22:0.273:2	./.	./.	./.	0/1:6,4:24:10:0.400:2	0/1:16,5:19:21:0.238:2	./.	./.	./.	./.	0/1:21,9:14:30:0.300:2
chr11	94862288	rs3740862	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:30:7:0.714:2	./.	./.	./.	./.	./.	0/1:68,54:31:122:0.443:2	./.	./.
chr11	94862577	rs3740861	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:97,81:32:178:0.455:2	0/1:100,92:31:192:0.479:2	./.	0/1:5,183:31:188:0.973:2	./.	0/1:99,85:31:184:0.462:2	0/1:111,82:31:193:0.425:2	./.	./.	./.	0/1:103,88:31:191:0.461:2
chr11	94917672	rs17621683	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,69:33:169:0.408:2	./.	./.
chr11	95512060	rs1150360	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:32:53:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,77:33:79:1.00:2	./.	0/1:0,58:32:58:1.00:2	0/1:21,26:33:47:0.553:2	0/1:4,72:33:76:0.947:2	./.	0/1:37,36:32:73:0.493:2	0/1:68,54:33:122:0.443:2
chr11	95521648	rs1727165	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,20:32:20:1.00:2	0/1:0,9:32:9:1.00:2	./.	0/1:0,36:32:36:1.00:2	./.	0/1:0,20:33:20:1.00:2	0/1:11,5:33:16:0.313:2	0/1:0,18:32:18:1.00:2	./.	0/1:8,12:31:20:0.600:2	0/1:16,14:33:30:0.467:2
chr11	95555088	rs11742	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,35:32:75:0.467:2	./.	0/1:38,34:31:72:0.472:2	./.	0/1:34,43:32:77:0.558:2	./.	./.	./.
chr11	95564259	rs644799	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:33:44:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,45:33:45:1.00:2	./.	0/1:0,58:32:58:1.00:2	0/1:13,19:32:32:0.594:2	0/1:0,64:32:64:1.00:2	./.	./.	./.
chr11	95569422	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:31:67:0.060:2	./.	./.	./.	./.	./.
chr11	95580926	rs566204	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,123:32:126:0.976:2	0/1:0,83:32:83:1.00:2	0/1:0,15:32:15:1.00:2	0/1:1,130:32:131:0.992:2	./.	0/1:2,138:32:140:0.986:2	0/1:62,56:32:118:0.475:2	0/1:3,165:32:168:0.982:2	./.	./.	./.
chr11	95657111	rs3824874	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:28:35:1.00:2	0/1:0,20:28:20:1.00:2	0/1:0,8:26:8:1.00:2	0/1:1,93:28:94:0.989:2	./.	0/1:1,69:27:70:0.986:2	0/1:51,31:29:82:0.378:2	0/1:3,96:28:99:0.970:2	./.	./.	./.
chr11	95712310	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:31:89:0.045:2	./.
chr11	95825797	rs7931870	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,13:33:16:0.813:2	0/1:49,65:32:114:0.570:2	0/1:0,144:32:144:1.00:2	./.	0/1:76,66:32:142:0.465:2	0/1:0,114:33:114:1.00:2	./.	0/1:1,103:33:104:0.990:2	0/1:0,120:33:120:1.00:2
chr11	95826485	rs61749253	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,89:31:167:0.533:2	./.	./.
chr11	96116444	rs10831519	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,25:31:67:0.373:2	0/1:24,19:31:43:0.442:2	./.	./.	./.	0/1:51,31:31:82:0.378:2	./.	./.
chr11	96126165	rs11549459	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,5:30:7:0.714:2	./.
chr11	96126361	rs4753751	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,12:29:23:0.522:2	0/1:10,9:27:19:0.474:2	./.	./.	0/1:0,15:28:15:1.00:2	./.	0/1:7,10:29:17:0.588:2	./.
chr11	99426941	rs372134165	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,17:29:59:0.288:2	./.
chr11	99690286	rs10790978	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,28:32:41:0.683:2	0/1:4,26:32:30:0.867:2	./.	0/1:11,39:33:50:0.780:2	0/1:17,23:32:40:0.575:2	0/1:18,29:32:47:0.617:2	0/1:11,10:32:21:0.476:2	0/1:21,26:32:47:0.553:2	0/1:36,27:34:63:0.429:2	0/1:25,22:31:47:0.468:2	0/1:32,36:33:68:0.529:2
chr11	99690376	rs12292659	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:57,19:33:76:0.250:2	0/1:46,6:31:52:0.115:2	./.	0/1:83,23:31:106:0.217:2	0/1:25,37:32:62:0.597:2	0/1:84,28:31:112:0.250:2	0/1:53,12:32:66:0.185:2	0/1:98,33:32:131:0.252:2	0/1:70,48:33:118:0.407:2	0/1:63,17:33:80:0.213:2	./.
chr11	99690428	rs7125822	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:38,26:30:64:0.406:2	0/1:29,10:29:39:0.256:2	./.	0/1:70,22:29:92:0.239:2	0/1:32,29:30:61:0.475:2	0/1:36,39:30:75:0.520:2	0/1:34,23:31:57:0.404:2	0/1:54,50:31:105:0.481:2	0/1:67,30:31:97:0.309:2	0/1:35,26:31:61:0.426:2	0/1:42,53:30:95:0.558:2
chr11	99690450	rs12222337	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:36,7:32:43:0.163:2	0/1:23,3:31:26:0.115:2	./.	0/1:51,9:32:60:0.150:2	./.	./.	./.	./.	./.	./.	./.
chr11	99690461	rs10893933	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:35,5:33:40:0.125:2	0/1:19,3:32:22:0.136:2	./.	0/1:43,5:32:48:0.104:2	./.	0/1:36,11:32:47:0.234:2	0/1:33,4:33:37:0.108:2	0/1:48,19:32:67:0.284:2	./.	0/1:32,8:32:40:0.200:2	0/1:59,4:32:63:0.063:2
chr11	99941283	rs61749257	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,20:30:50:0.400:2	./.	./.	./.	./.	./.	./.	./.
chr11	100061865	rs11223168	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,3:34:5:0.600:2	./.	0/1:5,7:34:12:0.583:2	./.	./.	0/1:2,7:29:9:0.778:2	./.
chr11	100226883	rs1216183	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,86:30:89:0.977:2	0/1:33,38:31:71:0.535:2	./.	./.	./.	0/1:59,52:31:111:0.468:2
chr11	100558549	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:35:56:0.071:2	./.	./.
chr11	100665888	rs61999341	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,8:31:16:0.500:2	./.	./.	./.
chr11	100814570	rs543146	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,21:31:41:0.512:2	0/1:40,3:33:43:0.070:2	./.	0/1:22,29:33:51:0.569:2	./.	0/1:31,23:31:55:0.426:2
chr11	100820663	rs17647207	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:31,24:31:55:0.436:2	0/1:13,15:30:28:0.536:2	0/1:2,7:31:9:0.778:2	./.	0/1:27,20:29:47:0.426:2	./.	0/1:25,13:28:38:0.342:2	./.	./.	./.	./.
chr11	100830613	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:32:145:0.028:2	./.	./.	./.	./.	./.
chr11	100830693	rs563460	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,32:28:88:0.364:2	0/1:23,18:30:41:0.439:2	0/1:14,12:29:26:0.462:2	0/1:59,47:30:106:0.443:2	0/1:76,27:28:103:0.262:2	0/1:0,122:28:122:1.00:2	0/1:58,48:29:106:0.453:2	0/1:57,45:28:102:0.441:2	0/1:0,110:29:110:1.00:2	0/1:0,105:29:105:1.00:2	0/1:0,98:29:98:1.00:2
chr11	100832470	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:32:103:0.039:2	./.	./.	./.	./.	./.
chr11	100832475	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:31:104:0.038:2	./.	./.	./.	./.	./.
chr11	100832476	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:32:103:0.039:2	./.	./.	./.	./.	./.
chr11	100833173	rs185460818	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,13:32:52:0.250:2	./.	./.	./.
chr11	100843944	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:29:73:0.055:2	./.	./.	./.	./.	./.
chr11	100843987	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:33:47:0.085:2	./.	./.	./.	./.	./.
chr11	100846936	rs654593	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,17:29:41:0.415:2	./.	0/1:24,23:28:47:0.489:2	./.	./.	0/1:24,15:30:39:0.385:2	0/1:17,27:29:44:0.614:2	0/1:29,15:27:44:0.341:2
chr11	100847050	rs569270	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,34:30:112:0.304:2	./.	0/1:85,29:30:114:0.254:2	./.	./.	0/1:82,52:31:134:0.388:2	0/1:84,50:30:134:0.373:2	0/1:64,31:28:96:0.326:2
chr11	100847069	rs569336	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,32:31:117:0.274:2	./.	0/1:82,24:31:106:0.226:2	./.	./.	0/1:81,54:32:135:0.400:2	./.	0/1:59,29:32:88:0.330:2
chr11	100858290	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,6:30:189:0.032:2	./.	./.	./.
chr11	100858310	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,6:31:179:0.034:2	./.	./.	./.
chr11	100859439	rs524811	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,17:32:30:0.567:2	./.	./.
chr11	100859496	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,4:29:69:0.058:2	./.	./.	./.	./.	./.	./.
chr11	100863096	rs515552	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,5:32:100:0.050:2	./.	0/1:53,71:34:124:0.573:2	./.	./.
chr11	100863319	rs61995873	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,34:33:86:0.395:2	./.	./.	./.	./.	./.	./.	./.
chr11	100863354	rs471933	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,33:32:103:0.320:2	./.	./.
chr11	100863611	rs79700319	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,95:31:189:0.503:2	./.	./.	./.	./.	./.	./.	./.
chr11	100863733	rs1047624	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,38:32:88:0.432:2	./.
chr11	100863753	rs79452957	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,28:31:63:0.444:2	./.
chr11	100863814	rs17654386	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,24:30:66:0.364:2	./.	./.	./.	./.	./.	0/1:32,22:30:54:0.407:2	./.
chr11	100863943	rs76026557	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:32:8:0.500:2	./.
chr11	100864146	rs17654410	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,35:33:93:0.376:2	./.
chr11	100864367	rs488365	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,10:29:15:0.667:2	./.	./.	0/1:15,12:30:27:0.444:2	0/1:8,8:28:16:0.500:2	0/1:0,31:29:31:1.00:2	0/1:11,7:31:18:0.389:2	0/1:12,10:29:22:0.455:2	0/1:0,15:31:15:1.00:2	0/1:14,11:32:25:0.440:2	0/1:0,28:32:28:1.00:2
chr11	100909991	rs500760	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,38:32:38:1.00:2	0/1:0,21:33:21:1.00:2	./.	0/1:1,35:33:36:0.972:2	./.	0/1:31,13:32:44:0.295:2	./.	0/1:0,42:33:42:1.00:2	./.	./.	./.
chr11	100922202	rs1042839	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,6:32:20:0.300:2	0/1:83,55:32:138:0.399:2	./.	0/1:85,70:31:155:0.452:2	./.	./.	./.	./.	./.
chr11	100933412	rs1042838	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,6:31:8:0.750:2	0/1:28,44:30:72:0.611:2	./.	0/1:33,33:30:66:0.500:2	./.	./.	./.	./.	./.
chr11	100998623	rs1379130	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,11:30:13:0.846:2	./.	0/1:17,20:29:37:0.541:2	0/1:15,30:27:46:0.667:2	./.	./.	./.	0/1:0,35:29:35:1.00:2	./.
chr11	100998771	rs3740753	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:30:11:0.273:2	./.	./.	./.	./.	./.	./.	./.
chr11	101323770	rs12805398	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	./.	./.	0/1:68,38:31:106:0.358:2	./.	./.	./.
chr11	101325788	rs72984209	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,7:31:9:0.778:2	./.	./.	0/1:51,48:31:99:0.485:2	./.	./.	0/1:62,39:33:101:0.386:2	./.	./.
chr11	101325821	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,5:32:103:0.049:2	0/1:62,5:32:67:0.075:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	101347093	rs12366144	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:29:11:1.00:2	./.	./.	./.	./.	./.	0/1:56,60:30:116:0.517:2	./.	./.
chr11	101762013	rs77442670	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,32:32:56:0.571:2
chr11	101771248	rs3858418	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,108:32:108:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,108:33:108:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,84:32:84:1.00:2
chr11	101832478	rs7926728	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,25:32:25:1.00:2	0/1:0,15:32:15:1.00:2	./.	0/1:0,18:31:18:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,29:32:29:1.00:2
chr11	101832689	rs61742172	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,20:32:64:0.313:2	./.
chr11	101832708	rs3740930	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,24:31:37:0.649:2	./.	./.	./.	./.	./.	./.
chr11	101833644	rs7109233	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:33:16:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,4:30:4:1.00:2	0/1:9,12:32:21:0.571:2	0/1:0,15:32:15:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,12:31:12:1.00:2	0/1:19,8:33:27:0.296:2	0/1:0,12:33:12:1.00:2	0/1:0,20:32:20:1.00:2
chr11	101852633	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:193,5:32:198:0.025:2	0/1:146,9:30:155:0.058:2	0/1:193,6:29:199:0.030:2	0/1:119,5:30:124:0.040:2	./.	0/1:191,6:32:197:0.030:2	0/1:172,5:31:177:0.028:2	./.
chr11	101857758	rs6590942	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:32:71:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,7:31:7:1.00:2	0/1:52,45:31:97:0.464:2	0/1:1,58:31:59:0.983:2	0/1:0,73:30:73:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,79:31:79:1.00:2	0/1:64,36:32:100:0.360:2	0/1:0,62:32:62:1.00:2	0/1:0,108:32:108:1.00:2
chr11	102080228	rs79981660	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,13:32:36:0.361:2	./.	./.
chr11	102094424	rs61749258	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,43:34:101:0.426:2	./.	./.
chr11	102199611	rs10895289	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:33:2:1.00:2	0/1:1,3:32:4:0.750:2	./.	./.	0/1:3,4:30:7:0.571:2	0/1:3,5:31:8:0.625:2	./.	./.	0/1:3,3:24:6:0.500:2	0/1:2,5:31:7:0.714:2	0/1:0,4:28:4:1.00:2
chr11	102220765	rs201622293	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,4:30:106:0.038:2	./.	./.	./.	./.	./.	./.
chr11	102220801	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:135,4:31:139:0.029:2	./.	./.	./.	./.	./.	./.
chr11	102220807	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:139,4:31:143:0.028:2	./.	./.	./.	./.	./.	./.
chr11	102221578	rs191312831	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,8:32:17:0.471:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	102248377	rs34510872	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,33:31:58:0.569:2	./.	./.	./.	./.	0/1:51,35:31:86:0.407:2
chr11	102272884	rs2155587	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,61:31:167:0.365:2	0/1:90,82:31:172:0.477:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	102398593	rs10502001	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,48:32:84:0.571:2	0/1:24,27:31:51:0.529:2	./.	0/1:45,41:32:86:0.477:2	0/1:29,30:32:59:0.508:2	./.	./.	./.	0/1:35,56:32:91:0.615:2	0/1:30,57:32:87:0.655:2	./.
chr11	102401411	rs55701929	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,20:31:41:0.488:2	0/1:8,5:32:13:0.385:2	./.	./.	./.	0/1:25,13:30:38:0.342:2	./.	./.	./.	./.	./.
chr11	102477377	rs1784424	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:56,60:31:116:0.517:2	0/1:35,34:32:69:0.493:2	0/1:4,7:32:11:0.636:2	./.	./.	./.	0/1:48,40:31:88:0.455:2	0/1:0,107:31:107:1.00:2	0/1:61,62:31:123:0.504:2	./.	0/1:0,116:31:117:1.00:2
chr11	102477395	rs1784423	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:52,52:33:105:0.500:2	0/1:32,26:33:58:0.448:2	0/1:4,3:34:7:0.429:2	./.	./.	./.	0/1:37,28:32:66:0.431:2	0/1:0,85:32:85:1.00:2	0/1:50,49:32:99:0.495:2	./.	0/1:0,90:32:90:1.00:2
chr11	102495998	rs2245803	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,15:29:32:0.469:2	0/1:10,7:28:17:0.412:2	0/1:0,5:29:5:1.00:2	0/1:0,52:29:52:1.00:2	0/1:14,19:28:33:0.576:2	0/1:27,28:28:55:0.509:2	0/1:9,17:30:26:0.654:2	0/1:0,63:29:63:1.00:2	0/1:0,49:29:49:1.00:2	./.	0/1:1,37:28:38:0.974:2
chr11	102562700	rs2509010	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,22:32:39:0.564:2	./.	./.	0/1:30,18:32:48:0.375:2	./.	0/1:29,20:32:49:0.408:2	0/1:58,38:32:96:0.396:2
chr11	102563739	rs1276289	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:16,18:30:34:0.529:2	0/1:10,11:32:21:0.524:2	./.	./.	0/1:0,43:31:43:1.00:2	./.	./.	0/1:41,13:31:54:0.241:2	./.	0/1:18,18:32:36:0.500:2	0/1:23,19:32:42:0.452:2
chr11	102567207	rs1276286	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:48,53:28:101:0.525:2	0/1:23,19:31:42:0.452:2	./.	./.	0/1:0,60:28:60:1.00:2	./.	./.	0/1:59,50:29:109:0.459:2	./.	0/1:47,37:30:84:0.440:2	0/1:60,58:30:118:0.492:2
chr11	102573569	rs3809018	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,37:31:93:0.398:2	0/1:62,41:30:103:0.398:2
chr11	102576358	rs2846707	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:32:82:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,83:32:83:1.00:2	0/1:70,27:33:97:0.278:2	0/1:0,96:32:96:1.00:2	0/1:0,47:32:47:1.00:2	./.	0/1:94,51:33:145:0.352:2	0/1:63,17:32:80:0.213:2	0/1:81,54:32:135:0.400:2
chr11	102576375	rs1939015	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:33:89:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,81:32:81:1.00:2	0/1:66,28:31:94:0.298:2	0/1:0,103:31:103:1.00:2	0/1:1,55:32:56:0.982:2	./.	0/1:0,142:33:142:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,130:32:130:1.00:2
chr11	102576382	rs12099177	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,20:33:91:0.220:2	./.
chr11	102584135	rs35231465	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:46,47:32:93:0.505:2	0/1:21,13:32:34:0.382:2	./.	./.	0/1:23,37:30:60:0.617:2	0/1:49,30:31:79:0.380:2	0/1:52,48:31:100:0.480:2	./.	./.	./.	./.
chr11	102587062	rs3740938	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,40:30:95:0.421:2	./.	0/1:30,36:32:66:0.545:2	./.
chr11	102593248	rs1940475	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,157:32:159:0.987:2	0/1:0,78:32:78:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,164:33:164:1.00:2	0/1:51,62:32:113:0.549:2	0/1:0,178:32:178:1.00:2	0/1:4,128:32:132:0.970:2	./.	0/1:73,95:32:168:0.565:2	./.	0/1:93,81:32:174:0.466:2
chr11	102595492	rs3765620	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:31:70:1.00:2	0/1:1,32:32:33:0.970:2	0/1:0,5:32:5:1.00:2	0/1:0,62:32:62:1.00:2	0/1:20,13:32:33:0.394:2	0/1:0,47:31:47:1.00:2	0/1:2,28:30:30:0.933:2	./.	0/1:58,21:32:79:0.266:2	./.	0/1:55,40:31:95:0.421:2
chr11	102649954	rs17860950	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,20:29:55:0.364:2
chr11	102650246	rs17860949	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,8:32:19:0.421:2	./.	./.	./.	./.	0/1:32,36:32:68:0.529:2	./.	0/1:28,27:32:55:0.491:2	./.
chr11	102650389	rs17293607	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:47,48:33:95:0.505:2	0/1:23,27:32:50:0.540:2	./.	./.	0/1:54,38:30:92:0.413:2	0/1:52,44:32:96:0.458:2	0/1:45,26:32:71:0.366:2	./.	./.	./.	./.
chr11	102650424	rs486055	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,31:32:75:0.413:2	0/1:24,18:32:42:0.429:2	./.	./.	./.	./.	./.	./.	0/1:66,39:32:105:0.371:2	./.	./.
chr11	102651313	rs17435959	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,53:32:96:0.552:2	./.
chr11	102662160	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,57:31:120:0.475:2	./.	./.	./.	./.	./.
chr11	102666316	rs470558	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:29:39:1.00:2	0/1:0,21:28:21:1.00:2	0/1:0,3:29:3:1.00:2	0/1:0,36:28:36:1.00:2	0/1:0,32:26:32:1.00:2	0/1:0,34:27:34:1.00:2	0/1:0,53:28:53:1.00:2	0/1:0,54:28:54:1.00:2	0/1:24,19:29:43:0.442:2	0/1:0,30:28:30:1.00:2	0/1:22,16:28:38:0.421:2
chr11	102668022	rs10488	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,44:31:97:0.454:2	./.	./.	./.	./.	./.	0/1:61,39:31:100:0.390:2	./.
chr11	102668759	rs371106856	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:35:57:0.070:2	./.	./.
chr11	102709425	rs520540	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,28:33:28:1.00:2	0/1:12,13:31:25:0.520:2	0/1:0,30:32:30:1.00:2	0/1:0,19:33:19:1.00:2	0/1:25,21:32:46:0.457:2	./.	0/1:18,25:33:43:0.581:2	./.
chr11	102713447	rs41380244	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,53:30:110:0.482:2	./.	./.	./.	./.	./.
chr11	102713465	rs602128	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,103:29:103:1.00:2	0/1:54,60:30:114:0.526:2	0/1:1,124:29:126:0.992:2	0/1:0,120:30:120:1.00:2	0/1:55,43:30:98:0.439:2	./.	0/1:48,38:30:86:0.442:2	./.
chr11	102713620	rs679620	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,18:28:18:1.00:2	0/1:7,8:29:15:0.533:2	0/1:0,23:28:23:1.00:2	0/1:0,23:28:23:1.00:2	0/1:8,6:26:14:0.429:2	./.	0/1:9,9:28:18:0.500:2	./.
chr11	102736642	rs652438	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,23:32:43:0.535:2	0/1:30,32:32:62:0.516:2	./.	0/1:21,15:33:36:0.417:2	./.
chr11	102738075	rs17368582	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,21:28:59:0.356:2	./.	./.	./.	./.	./.	./.
chr11	102738795	rs5003690	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,41:31:41:1.00:2
chr11	102742631	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.
chr11	102743681	rs201720785	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:32:86:0.047:2	./.
chr11	102980324	rs17301028	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:21,23:30:44:0.523:2	0/1:12,10:32:22:0.455:2	./.	./.	0/1:23,18:28:41:0.439:2	./.	./.	0/1:28,21:30:49:0.429:2	./.	./.	./.
chr11	102984832	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,5:26:90:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	102991197	rs17301182	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,24:32:48:0.500:2	0/1:12,14:32:26:0.538:2	./.	./.	./.	0/1:25,19:30:44:0.432:2	./.	0/1:25,16:29:41:0.390:2	0/1:34,17:32:51:0.333:2	./.	./.
chr11	103024105	rs191381310	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,39:32:71:0.549:2	./.	./.	./.	./.	./.	./.	./.
chr11	103027234	rs17301750	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,17:33:38:0.447:2	0/1:22,20:32:42:0.476:2	./.	./.	./.	0/1:33,21:32:54:0.389:2	./.	0/1:18,14:32:32:0.438:2	0/1:23,31:34:54:0.574:2	./.	./.
chr11	103029516	rs688906	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,23:33:53:0.434:2	0/1:19,16:32:35:0.457:2	0/1:0,2:32:2:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,52:32:52:1.00:2	0/1:26,37:32:63:0.587:2	0/1:0,43:33:43:1.00:2	0/1:37,30:33:67:0.448:2	0/1:48,27:32:75:0.360:2	0/1:39,27:33:66:0.409:2	0/1:0,73:33:73:1.00:2
chr11	103047007	rs585692	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,79:33:79:1.00:2	0/1:37,36:32:73:0.493:2	0/1:0,85:33:85:1.00:2
chr11	103048457	rs200190291	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,54:32:122:0.446:2	0/1:33,36:32:69:0.522:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	103057048	rs658804	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,23:33:50:0.460:2	0/1:16,10:32:26:0.385:2	0/1:0,7:33:7:1.00:2	0/1:1,54:32:55:0.982:2	0/1:0,40:32:40:1.00:2	0/1:27,23:32:50:0.460:2	0/1:0,40:32:40:1.00:2	0/1:34,14:31:48:0.292:2	0/1:24,31:33:55:0.564:2	0/1:29,18:33:47:0.383:2	0/1:0,66:31:66:1.00:2
chr11	103058099	rs377086701	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:33:136:0.029:2	./.	./.
chr11	103058126	rs586592	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,46:32:92:0.500:2	0/1:27,33:32:60:0.550:2	0/1:0,20:31:20:1.00:2	0/1:0,122:32:122:1.00:2	0/1:1,127:31:128:0.992:2	0/1:73,57:31:130:0.438:2	0/1:0,116:32:116:1.00:2	0/1:82,76:31:158:0.481:2	0/1:61,79:33:140:0.564:2	0/1:67,51:32:118:0.432:2	0/1:0,101:32:101:1.00:2
chr11	103082558	rs17394217	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,24:32:52:0.462:2	0/1:9,17:31:26:0.654:2	./.	./.	./.	0/1:37,30:32:67:0.448:2	./.	0/1:40,34:32:74:0.459:2	0/1:23,44:33:67:0.657:2	./.	./.
chr11	103082590	rs589623	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,43:33:83:0.518:2	0/1:24,19:31:43:0.442:2	0/1:0,15:31:15:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,35:32:35:1.00:2	0/1:43,59:31:102:0.578:2	0/1:0,50:31:50:1.00:2	0/1:55,54:31:109:0.495:2	0/1:58,33:32:91:0.363:2	0/1:61,29:32:90:0.322:2	0/1:0,98:32:98:1.00:2
chr11	103124071	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:34:188:0.021:2
chr11	103124135	rs11225634	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,39:31:124:0.315:2	0/1:37,32:29:69:0.464:2	./.	./.	./.	0/1:85,68:30:153:0.444:2	./.	0/1:90,71:29:161:0.441:2	0/1:75,73:30:148:0.493:2	./.	./.
chr11	103152919	rs12574626	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,3:29:19:0.158:2	./.	./.	./.	./.	0/1:17,12:31:29:0.414:2	./.	0/1:16,9:32:25:0.360:2	0/1:26,6:32:32:0.188:2	./.	./.
chr11	103153788	rs117178504	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,29:33:56:0.518:2	./.	./.	./.
chr11	103158278	rs10895391	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,81:31:83:0.976:2	0/1:0,67:31:67:1.00:2	./.	./.	0/1:62,29:31:91:0.319:2	0/1:63,34:31:97:0.351:2	0/1:29,47:31:76:0.618:2	0/1:62,47:31:109:0.431:2	0/1:84,40:32:124:0.323:2	0/1:47,30:31:77:0.390:2	./.
chr11	103229027	rs2566913	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,22:32:65:0.338:2	0/1:13,28:32:41:0.683:2	./.	0/1:5,30:33:35:0.857:2	0/1:12,22:32:34:0.647:2	./.	0/1:14,8:33:22:0.364:2	0/1:20,20:32:40:0.500:2	0/1:35,13:32:48:0.271:2	0/1:20,22:33:42:0.524:2	0/1:0,78:33:78:1.00:2
chr11	103349922	rs144717489	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,32:30:79:0.405:2	0/1:47,23:28:70:0.329:2	./.	./.	./.	./.	./.	./.
chr11	103780455	rs10791649	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:98,74:30:172:0.430:2	0/1:73,62:30:135:0.459:2	./.	0/1:88,92:30:180:0.511:2	0/1:1,183:30:185:0.995:2	./.	0/1:0,167:30:167:1.00:2	0/1:93,92:30:185:0.497:2	0/1:89,103:30:192:0.536:2	0/1:1,168:30:169:0.994:2	0/1:0,184:30:184:1.00:2
chr11	103818395	rs35045740	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,5:32:36:0.139:2	./.	0/1:31,11:32:42:0.262:2	./.	./.	./.	./.
chr11	103907956	rs7102675	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,14:32:27:0.519:2	./.	./.	./.	./.	./.	./.
chr11	103908735	rs1052313	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,39:31:106:0.368:2	0/1:43,36:30:79:0.456:2	0/1:56,45:31:101:0.446:2	0/1:59,43:31:102:0.422:2	./.	./.	./.	0/1:75,61:31:136:0.449:2
chr11	103908968	rs2279789	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,31:31:58:0.534:2	0/1:18,13:31:31:0.419:2	0/1:40,27:31:67:0.403:2	0/1:33,33:31:66:0.500:2	./.	./.	./.	0/1:42,38:31:80:0.475:2
chr11	103909166	rs260808	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,18:30:43:0.419:2	./.	0/1:29,21:31:50:0.420:2	./.	./.	./.	./.
chr11	103909771	rs117382829	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,14:32:31:0.452:2	./.	./.	./.	./.
chr11	103909897	rs4754098	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,8:33:24:0.333:2	0/1:10,9:33:19:0.474:2	0/1:17,9:33:26:0.346:2	0/1:8,12:32:20:0.600:2	./.	./.	./.	0/1:23,19:33:42:0.452:2
chr11	104819327	rs9507	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:33:75:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,92:33:92:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,74:32:74:1.00:2	0/1:2,119:32:121:0.983:2	0/1:0,98:34:98:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,84:33:84:1.00:2
chr11	104825649	rs1801319	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,47:31:94:0.500:2	./.	./.	./.	./.	./.	./.
chr11	104839222	rs658560	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,79:31:79:1.00:2	0/1:0,36:30:36:1.00:2	./.	0/1:0,72:31:72:1.00:2	0/1:37,30:31:67:0.448:2	0/1:0,77:31:77:1.00:2	0/1:35,32:31:67:0.478:2	0/1:57,30:32:88:0.345:2	0/1:1,87:32:88:0.989:2	0/1:0,58:33:58:1.00:2	0/1:2,88:32:90:0.978:2
chr11	104868195	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:33:86:0.047:2	./.	./.
chr11	104869708	rs523104	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,41:33:41:1.00:2	0/1:0,39:32:39:1.00:2	./.	0/1:0,51:32:51:1.00:2	./.	0/1:0,54:32:54:1.00:2	0/1:20,19:31:39:0.487:2	./.	0/1:45,19:33:64:0.297:2	0/1:2,53:33:55:0.964:2	0/1:1,74:32:75:0.987:2
chr11	104871031	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:34:196:0.020:2	./.	./.
chr11	104871091	rs113183781	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:34:194:0.021:2	./.	./.
chr11	104877927	rs507879	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,16:33:58:0.276:2	0/1:16,10:33:26:0.385:2	./.	0/1:30,22:33:52:0.423:2	0/1:0,34:32:34:1.00:2	./.	./.	./.	0/1:35,28:32:63:0.444:2	0/1:49,4:35:53:0.075:2	0/1:35,32:33:67:0.478:2
chr11	104879658	rs45483102	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,47:31:88:0.540:2
chr11	104893890	rs141170650	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,28:29:65:0.431:2	./.	./.	./.	./.	./.	0/1:20,19:29:39:0.487:2	./.
chr11	104899901	rs61751523	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,9:33:11:0.818:2	./.	./.	0/1:40,44:32:84:0.524:2	./.	./.	./.	./.	./.
chr11	104900488	rs580253	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,63:32:176:0.358:2	./.	./.
chr11	104905047	rs539595	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,84:32:191:0.440:2	./.	./.
chr11	104912221	rs542571	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,18:31:33:0.545:2	./.	./.
chr11	104915231	rs199997208	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,13:29:199:0.065:2	./.	./.
chr11	104916060	rs189692884	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,53:33:99:0.535:2	0/1:21,26:32:47:0.553:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	104971362	rs115239439	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,76:29:144:0.528:2	./.	./.	./.	./.	./.
chr11	104972101	rs77208579	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,20:31:55:0.364:2	./.	./.	./.	./.
chr11	105774579	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,5:31:162:0.031:2
chr11	105782654	rs72978094	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,44:33:75:0.587:2	./.	./.	./.	./.	./.	0/1:39,28:33:67:0.418:2	0/1:55,39:33:94:0.415:2
chr11	105842740	rs61736488	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,34:31:78:0.436:2	./.	./.	./.	./.	./.	./.
chr11	105845264	rs186295021	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,18:32:34:0.529:2	./.	./.	./.
chr11	105924230	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:31:83:0.048:2	./.
chr11	105950194	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:30:88:0.045:2	./.	./.	./.
chr11	105962161	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	106810223	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:30:86:0.047:2	./.	./.	./.
chr11	106849400	rs35760785	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,18:30:42:0.429:2	./.	./.	./.	0/1:44,30:32:74:0.405:2
chr11	107197640	rs3758911	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,14:31:33:0.424:2	0/1:19,14:32:33:0.424:2	./.	./.	0/1:22,24:31:46:0.522:2	0/1:28,25:32:53:0.472:2	0/1:12,14:32:26:0.538:2	0/1:35,28:32:63:0.444:2	./.	./.	./.
chr11	107299631	rs659040	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:56,35:30:91:0.385:2	0/1:35,30:31:65:0.462:2	./.	0/1:62,36:30:98:0.367:2	0/1:38,38:30:76:0.500:2	./.	./.	./.	0/1:74,32:31:106:0.302:2	./.	./.
chr11	107381630	rs183627082	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,34:31:56:0.607:2	./.	./.	./.	./.
chr11	107403032	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:33:140:0.029:2	./.	./.	./.	./.
chr11	107420530	rs645056	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:32:69:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,6:31:6:1.00:2	0/1:2,82:32:84:0.976:2	0/1:0,51:31:51:1.00:2	0/1:0,65:32:65:1.00:2	0/1:34,40:33:74:0.541:2	./.	0/1:54,39:33:93:0.419:2	0/1:33,35:32:68:0.515:2	0/1:50,43:32:93:0.462:2
chr11	107423875	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:34:69:0.058:2	./.	./.	./.	./.
chr11	107423920	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,3:33:54:0.056:2	./.	./.	./.	./.
chr11	107427622	rs78396710	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,6:24:82:0.073:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	107462522	rs117050555	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,47:29:85:0.553:2	./.	0/1:40,24:27:64:0.375:2	./.	./.	./.
chr11	107463159	rs4754233	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,94:32:185:0.508:2	./.	0/1:107,81:32:188:0.431:2	./.	./.	./.
chr11	107578721	rs583362	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,27:31:27:1.00:2	0/1:0,11:30:11:1.00:2	./.	0/1:8,9:32:17:0.529:2	./.	0/1:0,35:30:35:1.00:2	0/1:15,3:29:18:0.167:2	0/1:0,26:30:27:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,21:30:21:1.00:2	0/1:11,13:31:24:0.542:2
chr11	107799462	rs149871010	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,24:30:44:0.545:2	./.	./.	./.	./.
chr11	107917087	rs7117111	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:16,20:33:36:0.556:2	0/1:10,8:30:18:0.444:2	0/1:4,3:31:7:0.429:2	./.	0/1:5,16:32:21:0.762:2	0/1:0,37:32:37:1.00:2	0/1:15,7:32:22:0.318:2	0/1:0,29:31:29:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,34:31:34:1.00:2	0/1:23,17:32:40:0.425:2
chr11	107940837	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:34:79:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	107974994	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:32:83:0.048:2	./.	./.	./.
chr11	107974995	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:32:88:0.045:2	./.	./.	./.
chr11	107992325	rs34512802	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:2,3:30:5:0.600:2	./.	0/1:10,11:30:21:0.524:2	./.	./.	./.	0/1:0,34:30:34:1.00:2	./.	0/1:8,3:29:11:0.273:2	./.
chr11	107992346	rs11540420	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:2,3:33:5:0.600:2	./.	0/1:7,10:33:17:0.588:2	./.	./.	./.	0/1:0,32:32:32:1.00:2	./.	0/1:9,4:34:13:0.308:2	./.
chr11	108009660	rs35188041	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,7:31:18:0.389:2	./.	0/1:96,69:32:165:0.418:2	./.	./.	./.	./.	./.	0/1:103,74:32:177:0.418:2
chr11	108009745	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:90,4:29:94:0.043:2	./.	./.	./.	./.	./.	./.
chr11	108032062	rs113771275	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:34:198:0.020:2	./.	./.	./.	./.	./.
chr11	108032707	rs35303872	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,10:30:28:0.357:2	./.	./.	./.
chr11	108040484	rs34052882	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:44,16:33:62:0.267:2	0/1:14,9:32:23:0.391:2	./.	./.	./.	./.	./.	./.	./.	0/1:58,31:32:89:0.348:2	./.
chr11	108043988	rs2070661	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,25:32:25:1.00:2	./.	0/1:0,34:31:34:1.00:2	0/1:20,13:30:33:0.394:2	./.	0/1:17,8:30:25:0.320:2	0/1:0,38:31:38:1.00:2	0/1:40,21:32:61:0.344:2	0/1:0,34:31:34:1.00:2	./.
chr11	108044091	rs4144901	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,18:29:20:0.900:2	./.	./.	0/1:19,20:31:39:0.513:2	./.	./.
chr11	108059953	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:35:181:0.022:2
chr11	108093208	rs228589	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,76:30:78:0.974:2	0/1:1,37:32:38:0.974:2	0/1:6,3:31:9:0.333:2	0/1:1,97:30:98:0.990:2	0/1:57,24:30:81:0.296:2	./.	0/1:54,35:30:89:0.393:2	0/1:0,92:31:92:1.00:2	0/1:68,46:31:114:0.404:2	0/1:0,86:31:87:1.00:2	./.
chr11	108098576	rs1800054	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,15:32:30:0.500:2	./.	./.	./.	./.	./.
chr11	108106554	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:74,4:30:78:0.051:2	./.	./.	./.	./.	./.	./.
chr11	108114793	rs147915571	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:120,4:34:124:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr11	108119823	rs56128736	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,29:29:82:0.358:2
chr11	108122700	rs2235006	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,17:32:39:0.436:2	./.	./.	./.	./.	./.
chr11	108143456	rs1800057	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,17:28:42:0.405:2	./.	./.	./.	./.	./.	./.	./.
chr11	108163354	rs201277352	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,6:27:115:0.052:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	108163487	rs1800889	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,62:31:143:0.434:2
chr11	108175462	rs1801516	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,16:30:44:0.364:2	./.	0/1:17,19:31:36:0.528:2	./.	0/1:44,34:33:78:0.436:2	0/1:35,13:31:48:0.271:2	./.
chr11	108183167	rs659243	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,138:33:138:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,164:33:164:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,130:32:130:1.00:2	0/1:1,98:32:100:0.990:2	0/1:0,130:32:130:1.00:2	0/1:1,155:33:156:0.994:2	0/1:0,107:32:107:1.00:2	0/1:0,158:33:158:1.00:2
chr11	108264068	rs137901968	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,72:31:173:0.416:2	./.	./.	./.	./.	./.	./.	./.
chr11	108345599	rs369996182	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:33:199:0.020:2	./.	./.
chr11	108357137	rs74911261	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,50:32:89:0.562:2	./.	./.	./.	./.	./.	./.	./.
chr11	108380312	rs56194394	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,50:31:94:0.532:2	./.	./.
chr11	108380335	rs1943382	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:33:74:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,104:33:104:1.00:2	0/1:0,68:32:69:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,103:33:103:1.00:2	0/1:0,106:33:106:1.00:2	0/1:0,147:34:147:1.00:2	0/1:0,102:33:102:1.00:2	0/1:0,128:33:128:1.00:2
chr11	108381247	rs2640779	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,8:32:21:0.381:2	./.	0/1:69,68:32:137:0.496:2	./.	0/1:84,70:33:154:0.455:2	./.	./.	./.	0/1:1,165:33:167:0.994:2
chr11	108381610	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,6:32:157:0.038:2	./.	./.	./.
chr11	108383616	rs116692943	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,76:32:148:0.514:2	./.	./.	./.
chr11	108383676	rs10749920	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:51,51:29:102:0.500:2	0/1:36,40:29:76:0.526:2	./.	./.	./.	./.	./.	0/1:4,161:29:165:0.976:2	./.	0/1:54,65:29:119:0.546:2	./.
chr11	108384021	rs76626971	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,9:32:19:0.474:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	108384207	rs2846412	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:62,68:32:130:0.523:2	0/1:37,44:31:81:0.543:2	0/1:7,7:32:14:0.500:2	./.	0/1:46,40:31:86:0.465:2	./.	0/1:51,49:31:100:0.490:2	0/1:4,113:31:118:0.966:2	./.	0/1:40,75:32:115:0.652:2	0/1:0,145:32:145:1.00:2
chr11	108409784	rs2640785	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:32:9:0.667:2	./.	0/1:32,41:30:73:0.562:2	./.	0/1:39,32:30:71:0.451:2	./.	./.	./.	0/1:51,46:30:97:0.474:2
chr11	108464209	rs2640738	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:49,33:30:82:0.402:2	0/1:32,17:30:49:0.347:2	0/1:4,3:28:7:0.429:2	./.	./.	0/1:48,49:29:97:0.505:2	0/1:44,19:30:63:0.302:2	0/1:57,35:29:92:0.380:2	./.	./.	0/1:0,90:30:90:1.00:2
chr11	108559704	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:33:74:0.054:2	./.	./.	./.	./.
chr11	108788731	rs376045809	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:31:79:0.051:2
chr11	109964187	rs7116896	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.
chr11	110035262	rs1026608	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:33:10:0.400:2	./.	./.	./.	0/1:0,71:32:72:1.00:2	0/1:40,40:32:80:0.500:2	0/1:32,42:33:74:0.568:2	./.	./.
chr11	110035301	rs1026607	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,40:31:40:1.00:2	0/1:26,31:29:57:0.544:2	0/1:18,29:29:47:0.617:2	./.	./.
chr11	110036365	rs61756697	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,15:32:29:0.517:2	./.	./.	./.	./.
chr11	110103960	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:112,4:34:116:0.034:2	./.	0/1:122,5:32:127:0.039:2	./.	./.	./.	./.
chr11	110103984	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:28:198:0.025:2	./.	./.	./.	./.
chr11	110104001	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:191,5:31:197:0.026:2	./.	0/1:192,5:32:197:0.025:2	./.	./.	./.	./.
chr11	110106872	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:32:55:0.073:2	./.	./.	./.	./.
chr11	110118548	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:106,4:32:110:0.036:2	./.	./.	./.	./.	./.	./.	./.
chr11	110128835	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:130,4:34:134:0.030:2	./.	./.	./.	./.	./.	0/1:93,5:32:98:0.051:2	./.
chr11	110134917	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,3:33:48:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr11	110451885	rs10488765	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,22:30:47:0.468:2
chr11	110454313	rs7936020	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,55:30:145:0.379:2	./.	./.	./.
chr11	110454338	rs7936226	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,69:31:183:0.377:2	./.	./.	./.
chr11	110486279	rs192403835	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,12:31:39:0.308:2	./.	./.	./.
chr11	110501448	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:33:139:0.029:2	./.	./.
chr11	111167145	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,25:31:46:0.543:2	./.	./.
chr11	111167557	rs6589218	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,52:29:111:0.468:2	0/1:36,36:28:72:0.500:2	0/1:0,10:30:10:1.00:2	0/1:0,145:29:145:1.00:2	0/1:111,46:29:157:0.293:2	0/1:66,74:29:140:0.529:2	0/1:69,58:29:127:0.457:2	0/1:61,74:29:136:0.548:2	0/1:0,115:30:115:1.00:2	./.	0/1:1,85:28:86:0.988:2
chr11	111167776	rs7944895	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,27:33:59:0.458:2	0/1:22,22:32:44:0.500:2	0/1:0,16:31:16:1.00:2	0/1:0,72:33:72:1.00:2	0/1:27,25:31:52:0.481:2	0/1:47,40:33:87:0.460:2	0/1:40,22:33:62:0.355:2	0/1:22,50:33:72:0.694:2	0/1:0,88:34:88:1.00:2	./.	0/1:0,80:32:80:1.00:2
chr11	111167792	rs10891245	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,10:28:15:0.714:2	0/1:46,53:29:99:0.535:2	./.	0/1:56,48:29:104:0.462:2	./.	0/1:38,53:29:91:0.582:2	./.	./.	0/1:52,48:28:100:0.480:2
chr11	111168009	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:33:76:0.053:2	./.	./.
chr11	111168767	rs7127721	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,30:31:50:0.600:2	./.	0/1:0,44:31:44:1.00:2	./.	0/1:28,28:31:56:0.500:2	./.	./.	0/1:18,21:32:39:0.538:2
chr11	111169110	rs10244	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,20:29:29:0.690:2	./.	./.	./.	./.	./.	./.	0/1:23,35:29:58:0.603:2
chr11	111179054	rs3087587	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,13:31:40:0.325:2	0/1:17,9:30:26:0.346:2	./.	0/1:0,47:30:47:1.00:2	0/1:27,20:29:47:0.426:2	0/1:0,36:30:36:1.00:2	0/1:3,29:31:32:0.906:2	0/1:1,31:31:32:0.969:2	./.	0/1:1,36:31:37:0.973:2	0/1:18,21:30:39:0.538:2
chr11	111225028	rs11213848	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,43:31:82:0.524:2	./.	./.	./.	./.	./.	./.
chr11	111229616	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,17:30:39:0.436:2	./.	./.	./.	./.	./.
chr11	111338433	rs11603646	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,6:32:12:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	111368047	rs489078	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,117:32:117:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,154:32:154:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,135:31:135:1.00:2	0/1:0,156:32:156:1.00:2	0/1:2,156:33:158:0.987:2	0/1:0,169:34:169:1.00:2	0/1:0,118:33:118:1.00:2	0/1:0,159:33:159:1.00:2
chr11	111384230	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,3:34:44:0.068:2	./.	./.
chr11	111386775	rs61751529	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,33:30:60:0.550:2	./.	./.	./.	./.	./.	./.	./.
chr11	111420364	rs634679	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:29:57:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,82:29:82:1.00:2	0/1:0,92:29:92:1.00:2	0/1:0,82:29:82:1.00:2	0/1:0,99:29:99:1.00:2	0/1:0,84:29:84:1.00:2	0/1:0,78:29:78:1.00:2	0/1:0,44:30:44:1.00:2	0/1:0,58:28:58:1.00:2
chr11	111623033	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:29:81:0.049:2	./.	./.	./.	./.	./.
chr11	111635619	rs61757743	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,28:30:63:0.444:2	./.	./.	./.
chr11	111637041	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,17:12:71:0.239:2	0/1:37,13:12:50:0.260:2	./.
chr11	111724133	rs10502151	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,44:31:119:0.370:2	./.	0/1:130,4:31:134:0.030:2	0/1:1,115:31:116:0.991:2	./.	./.	./.
chr11	111747297	rs7124696	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:33,42:31:75:0.560:2	0/1:16,13:30:29:0.448:2	0/1:4,6:31:10:0.600:2	./.	0/1:19,27:30:46:0.587:2	0/1:0,73:29:73:1.00:2	./.	./.	./.	0/1:35,28:31:63:0.444:2	./.
chr11	111749349	rs611010	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:56,44:31:100:0.440:2	0/1:19,33:30:52:0.635:2	./.	0/1:77,58:31:135:0.430:2	0/1:0,78:31:78:1.00:2	0/1:0,105:31:105:1.00:2	0/1:55,48:31:103:0.466:2	0/1:0,122:31:122:1.00:2	0/1:69,52:32:121:0.430:2	0/1:0,83:32:83:1.00:2	./.
chr11	111754574	rs1045282	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,20:33:41:0.488:2	0/1:8,18:32:26:0.692:2	./.	./.	0/1:21,9:33:30:0.300:2	0/1:0,43:33:43:1.00:2	./.	./.	./.	0/1:30,11:31:41:0.268:2	./.
chr11	111795085	rs7124407	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:33:11:0.364:2	./.	./.	./.	0/1:0,19:32:19:1.00:2	./.	./.	./.
chr11	111848531	rs10891303	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,54:30:104:0.519:2	./.	./.	./.	0/1:0,106:30:106:1.00:2	./.	./.	./.
chr11	111896324	rs2303436	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,34:30:60:0.567:2	./.	./.	./.	0/1:5,83:30:88:0.943:2	./.	./.	./.
chr11	111908162	rs627441	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,20:30:35:0.571:2	./.	./.	./.	0/1:1,27:28:28:0.964:2	./.	./.	./.
chr11	111916647	rs10891314	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,9:32:41:0.220:2	./.	./.	./.	0/1:0,27:32:27:1.00:2	./.	./.	./.
chr11	111941959	rs1425917	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,72:31:153:0.471:2	0/1:90,88:32:178:0.494:2
chr11	111957652	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:33:58:0.069:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	111958677	rs11214077	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,83:29:138:0.601:2	./.	./.	./.	./.	./.	./.
chr11	111965573	rs200981457	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,4:28:76:0.053:2	./.	./.	./.	./.	0/1:105,4:30:109:0.037:2	./.
chr11	112014328	rs5744290	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:35,13:32:48:0.271:2	0/1:11,9:32:20:0.450:2	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:33:29:0.138:2	./.
chr11	112020916	rs549908	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,12:31:33:0.364:2	0/1:14,5:30:19:0.263:2	./.	0/1:18,18:31:37:0.500:2	0/1:21,15:31:36:0.417:2	0/1:13,21:30:34:0.618:2	0/1:0,18:31:18:1.00:2	0/1:20,17:30:37:0.459:2	./.	./.	./.
chr11	112040027	rs360712	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,44:33:87:0.506:2	0/1:34,42:32:76:0.553:2	./.	0/1:51,57:33:108:0.528:2	0/1:40,40:32:80:0.500:2	0/1:40,48:31:88:0.545:2	0/1:0,89:33:89:1.00:2	0/1:42,69:32:111:0.622:2	./.	./.	./.
chr11	112065434	rs10891338	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:29:53:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,54:29:54:1.00:2	0/1:0,56:29:56:1.00:2	0/1:0,76:30:76:1.00:2	0/1:0,66:29:66:1.00:2	0/1:1,46:29:47:0.979:2	0/1:0,47:31:47:1.00:2	0/1:0,48:29:48:1.00:2	0/1:3,73:30:76:0.961:2
chr11	112070431	rs146824071	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,9:33:32:0.281:2	./.
chr11	112084525	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:32:85:0.047:2	./.
chr11	112088499	rs2217401	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:33:34:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,47:33:47:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,37:33:37:1.00:2
chr11	112103886	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:123,4:31:127:0.031:2	./.	./.	./.	./.	./.	./.
chr11	112123095	rs2564872	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,30:32:46:0.667:2	0/1:21,9:32:30:0.300:2	0/1:0,6:32:6:1.00:2	0/1:2,80:33:82:0.976:2	0/1:21,30:32:51:0.588:2	0/1:26,37:32:63:0.587:2	./.	0/1:27,23:33:50:0.460:2	0/1:0,90:33:90:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,79:33:79:1.00:2
chr11	112832353	rs7105734	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,83:32:83:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,149:32:149:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,109:31:109:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,120:31:120:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,96:31:96:1.00:2	0/1:0,123:31:123:1.00:2
chr11	112832358	rs6589347	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:32:80:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,15:31:15:1.00:2	0/1:2,138:32:140:0.986:2	0/1:0,34:29:34:1.00:2	0/1:0,101:31:101:1.00:2	0/1:0,55:32:55:1.00:2	0/1:1,119:31:120:0.992:2	0/1:0,95:32:95:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,120:32:120:1.00:2
chr11	112832405	rs73002342	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,35:30:68:0.515:2	./.	./.	./.	./.	0/1:46,31:31:77:0.403:2	./.	./.
chr11	113103996	rs584427	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,147:33:150:0.980:2	0/1:0,76:32:76:1.00:2	0/1:9,16:33:25:0.640:2	0/1:110,86:32:196:0.439:2	./.	0/1:85,94:32:180:0.525:2	0/1:5,190:32:195:0.974:2	0/1:0,194:32:194:1.00:2	./.	0/1:81,81:32:162:0.500:2	0/1:1,184:32:185:0.995:2
chr11	113107077	rs111567425	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,83:33:187:0.444:2	./.	./.
chr11	113111501	rs2303377	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:100,83:31:183:0.454:2	0/1:67,75:32:144:0.528:2	./.	0/1:88,91:33:179:0.508:2	0/1:91,82:32:173:0.474:2	./.	0/1:193,5:32:198:0.025:2	./.	0/1:102,88:33:190:0.463:2	0/1:104,84:32:188:0.447:2	./.
chr11	113113515	rs635596	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,106:32:106:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,111:31:111:1.00:2	0/1:0,71:32:71:1.00:2	0/1:2,133:32:135:0.985:2	0/1:0,113:32:113:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,80:32:80:1.00:2
chr11	113141046	rs186731793	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,76:32:171:0.444:2	./.	./.	./.	./.	./.	./.
chr11	113194168	rs723077	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,27:33:27:1.00:2	0/1:0,22:33:22:1.00:2	./.	0/1:0,53:33:53:1.00:2	0/1:17,6:33:23:0.261:2	0/1:0,38:32:38:1.00:2	0/1:1,36:33:37:0.973:2	0/1:0,32:33:32:1.00:2	0/1:25,21:33:46:0.457:2	./.	./.
chr11	113200709	rs2303380	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,139:32:141:0.986:2	0/1:0,102:32:102:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,172:32:172:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,175:32:175:1.00:2	0/1:0,139:32:139:1.00:2	0/1:7,167:32:174:0.960:2	0/1:1,162:33:163:0.994:2	0/1:1,140:32:142:0.993:2	./.
chr11	113211370	rs10891537	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,48:29:49:0.980:2	0/1:0,30:29:30:1.00:2	./.	0/1:1,53:29:54:0.981:2	0/1:23,17:29:40:0.425:2	0/1:0,42:29:42:1.00:2	0/1:0,54:28:54:1.00:2	0/1:0,53:29:53:1.00:2	0/1:17,22:29:39:0.564:2	0/1:19,26:29:45:0.578:2	./.
chr11	113212553	rs6589372	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:32:15:0.400:2	./.	0/1:50,24:31:74:0.324:2	./.	./.	./.	0/1:72,48:33:120:0.400:2	0/1:56,32:32:88:0.364:2	./.
chr11	113220831	rs201793229	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:33:149:0.027:2	./.	./.	./.	./.	./.
chr11	113264272	rs17115439	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,100:33:100:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,123:32:123:1.00:2	0/1:0,117:32:117:1.00:2	0/1:0,126:32:126:1.00:2	0/1:4,113:32:117:0.966:2	0/1:1,162:32:163:0.994:2	0/1:0,171:33:171:1.00:2	0/1:0,113:33:113:1.00:2	./.
chr11	113264382	rs35877321	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,45:31:86:0.523:2	./.	./.	./.
chr11	113264470	rs4938013	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,15:31:15:1.00:2	0/1:0,8:32:8:1.00:2	./.	0/1:0,19:32:19:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,14:32:14:1.00:2	0/1:1,18:32:19:0.947:2	./.
chr11	113268059	rs11604671	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:33:31:1.00:2	0/1:0,24:31:24:1.00:2	0/1:5,5:31:10:0.500:2	0/1:0,68:32:68:1.00:2	0/1:53,50:32:103:0.485:2	0/1:0,62:32:62:1.00:2	0/1:0,84:32:84:1.00:2	0/1:2,101:32:105:0.981:2	0/1:34,24:34:59:0.414:2	0/1:27,25:32:52:0.481:2	./.
chr11	113269974	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,6:32:111:0.054:2	./.	./.	./.	./.
chr11	113270015	rs4938016	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:30:62:1.00:2	0/1:0,40:29:40:1.00:2	0/1:2,6:29:8:0.750:2	0/1:0,63:30:63:1.00:2	0/1:59,46:28:105:0.438:2	0/1:0,95:30:95:1.00:2	0/1:1,97:30:99:0.990:2	0/1:1,84:29:85:0.988:2	0/1:35,40:30:75:0.533:2	0/1:37,35:29:72:0.486:2	./.
chr11	113270042	rs34983219	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,115:32:118:0.975:2	0/1:57,37:32:94:0.394:2	./.	./.	./.
chr11	113270160	rs2734849	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:30:36:1.00:2	0/1:0,22:30:22:1.00:2	0/1:3,5:29:8:0.625:2	0/1:0,47:29:47:1.00:2	0/1:50,30:29:80:0.375:2	0/1:0,66:30:66:1.00:2	0/1:6,88:29:94:0.936:2	0/1:2,69:29:71:0.972:2	0/1:24,28:31:52:0.538:2	0/1:27,15:29:42:0.357:2	./.
chr11	113270374	rs2734848	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:30:30:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,6:31:6:1.00:2	0/1:2,60:31:62:0.968:2	0/1:0,56:31:57:1.00:2	0/1:0,43:31:43:1.00:2	0/1:1,64:31:65:0.985:2	0/1:0,51:31:51:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,30:31:30:1.00:2	./.
chr11	113270828	rs1800497	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,35:31:83:0.422:2	./.
chr11	113283459	rs6277	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,166:31:166:1.00:2	0/1:2,136:32:138:0.986:2	0/1:26,13:30:39:0.333:2	0/1:2,175:31:177:0.989:2	0/1:108,80:31:188:0.426:2	0/1:1,169:31:170:0.994:2	0/1:11,174:31:185:0.941:2	0/1:4,186:31:190:0.979:2	0/1:93,86:31:179:0.480:2	0/1:87,97:32:184:0.527:2	./.
chr11	113283477	rs6275	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,145:30:146:1.00:2	0/1:1,109:30:111:0.991:2	0/1:20,12:30:32:0.375:2	0/1:2,165:29:167:0.988:2	0/1:88,70:29:158:0.443:2	0/1:0,162:30:162:1.00:2	0/1:8,161:29:169:0.953:2	0/1:4,178:29:182:0.978:2	0/1:82,78:30:160:0.488:2	0/1:1,155:29:156:0.994:2	./.
chr11	113561025	rs11214703	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,67:31:145:0.462:2	./.	./.	./.	./.	./.	./.	./.
chr11	113561054	rs7110736	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,32:32:73:0.438:2	0/1:27,21:32:48:0.438:2	0/1:11,7:34:18:0.389:2	0/1:0,133:33:133:1.00:2	0/1:108,61:32:169:0.361:2	0/1:0,120:32:120:1.00:2	./.	0/1:87,82:32:169:0.485:2	0/1:0,106:34:106:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,106:33:106:1.00:2
chr11	113561057	rs7110738	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,31:32:73:0.425:2	0/1:30,21:32:51:0.412:2	0/1:11,7:33:18:0.389:2	0/1:0,132:33:132:1.00:2	0/1:107,60:32:167:0.359:2	0/1:0,120:32:120:1.00:2	./.	0/1:81,82:32:163:0.503:2	0/1:0,106:33:106:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,105:33:106:1.00:2
chr11	113565287	rs148395630	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:29:4:0.750:2	./.	./.	./.	./.	./.	./.	./.
chr11	113565322	rs17115841	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,3:31:16:0.188:2	0/1:10,6:33:16:0.375:2
chr11	113570385	rs11601425	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,9:31:20:0.450:2	./.	0/1:116,74:31:190:0.389:2	./.	./.	./.	./.	./.	0/1:45,43:31:88:0.489:2
chr11	113570405	rs4936280	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,49:28:112:0.438:2	0/1:40,31:29:71:0.437:2	0/1:9,6:29:15:0.400:2	0/1:0,148:29:148:1.00:2	0/1:117,71:28:188:0.378:2	0/1:0,153:30:153:1.00:2	./.	0/1:95,94:29:189:0.497:2	0/1:0,130:30:131:1.00:2	0/1:0,101:30:101:1.00:2	0/1:1,95:28:96:0.990:2
chr11	113570852	rs3802854	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,7:32:23:0.304:2	./.	./.	0/1:20,10:32:30:0.333:2	./.	./.
chr11	113576932	rs7926267	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,33:32:74:0.446:2	0/1:32,34:32:66:0.515:2	0/1:15,6:34:21:0.286:2	0/1:0,107:32:107:1.00:2	0/1:65,70:30:135:0.519:2	0/1:1,143:32:144:0.993:2	./.	0/1:83,58:30:141:0.411:2	0/1:0,148:32:148:1.00:2	0/1:1,81:32:82:0.988:2	0/1:0,109:31:109:1.00:2
chr11	113608355	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,54:31:102:0.529:2
chr11	113608417	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,33:32:70:0.471:2	./.
chr11	113670052	rs2459971	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,21:31:21:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,58:31:58:1.00:2	0/1:1,28:30:29:0.966:2	0/1:0,28:30:28:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,54:31:54:1.00:2	0/1:1,46:32:47:0.979:2	0/1:0,38:31:38:1.00:2	0/1:0,71:32:71:1.00:2
chr11	113679119	rs2465647	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,18:32:31:0.581:2	0/1:20,12:31:32:0.375:2	./.	0/1:0,51:31:51:1.00:2	0/1:0,27:32:27:1.00:2	0/1:25,22:32:47:0.468:2	0/1:2,41:32:43:0.953:2	0/1:34,26:32:60:0.433:2	0/1:23,23:31:46:0.500:2	0/1:32,17:33:49:0.347:2	0/1:0,47:32:47:1.00:2
chr11	113698002	rs17802314	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,18:32:56:0.321:2	./.	./.	./.	./.	./.
chr11	113700006	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:32:163:0.025:2	./.	./.	./.
chr11	113803028	rs1176744	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,9:32:16:0.563:2	0/1:101,97:32:198:0.490:2	0/1:68,59:32:128:0.465:2	./.	0/1:71,51:32:123:0.418:2	./.	0/1:117,77:33:195:0.397:2	0/1:88,59:33:147:0.401:2	0/1:0,180:32:180:1.00:2
chr11	113803104	rs2276305	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,76:32:146:0.521:2	./.	./.	./.	./.	./.	./.	./.
chr11	113803666	rs17116138	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,15:32:52:0.288:2	./.	./.	./.	./.	./.	./.
chr11	113846077	rs33940208	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,36:32:72:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr11	113848273	rs1985242	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:40,27:32:67:0.403:2	0/1:19,31:32:50:0.620:2	0/1:0,10:31:10:1.00:2	./.	0/1:48,42:31:90:0.467:2	0/1:40,25:31:65:0.385:2	0/1:0,60:31:60:1.00:2	./.	0/1:51,43:32:94:0.457:2	0/1:45,38:31:83:0.458:2	./.
chr11	113850006	rs61905785	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:24:7:0.429:2
chr11	113853876	rs139646314	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,4:32:65:0.062:2	./.	./.	./.	./.	./.	./.
chr11	113857365	rs56232120	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:31:12:0.583:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	113860425	rs1176713	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:13,21:31:34:0.618:2	0/1:7,5:31:12:0.417:2	./.	0/1:14,15:33:29:0.517:2	./.	0/1:15,19:32:34:0.559:2	./.	0/1:24,20:32:44:0.455:2	0/1:24,14:34:38:0.368:2	0/1:7,13:32:20:0.650:2	0/1:6,17:33:23:0.739:2
chr11	114278341	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,5:32:137:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	114310357	rs144263894	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,4:33:46:0.087:2	./.	./.	./.	./.	./.	./.	./.
chr11	114393652	rs10891692	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:56,47:33:103:0.456:2	0/1:34,33:32:67:0.493:2	./.	0/1:48,50:33:98:0.510:2	./.	0/1:54,52:32:106:0.491:2	0/1:45,42:32:87:0.483:2	./.	./.	./.	./.
chr11	114400962	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:31:171:0.023:2	./.	./.	./.	./.	./.
chr11	114401247	rs7941796	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,68:28:124:0.548:2	./.	./.	0/1:65,59:29:124:0.476:2	0/1:62,58:29:120:0.483:2	./.	./.
chr11	114401283	rs7941923	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,58:32:113:0.513:2	./.	./.	0/1:74,53:33:127:0.417:2	0/1:68,78:33:146:0.534:2	./.	./.
chr11	114441936	rs12421748	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,60:30:146:0.411:2	0/1:85,72:31:157:0.459:2	./.	./.
chr11	114441943	rs10891705	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:65,54:30:119:0.454:2	0/1:50,38:31:88:0.432:2	./.	0/1:69,56:30:125:0.448:2	./.	0/1:73,62:30:135:0.459:2	0/1:55,58:30:113:0.513:2	./.	./.	./.	./.
chr11	114442103	rs550897	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,30:33:81:0.370:2	0/1:16,11:31:27:0.407:2	./.	0/1:29,28:33:57:0.491:2	0/1:33,46:33:80:0.582:2	0/1:38,38:32:76:0.500:2	0/1:37,35:32:72:0.486:2	0/1:25,35:32:60:0.583:2	0/1:31,33:33:64:0.516:2	./.	./.
chr11	114453094	rs114870261	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,38:28:89:0.427:2	./.	./.	./.	./.	./.	./.
chr11	114453418	rs115348655	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,86:31:167:0.515:2	./.	./.	./.	./.	./.	./.
chr11	114568942	rs11215158	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:41,46:30:87:0.529:2	0/1:46,39:30:85:0.459:2	./.	./.	0/1:47,33:30:80:0.413:2	./.	./.	./.	0/1:56,40:31:96:0.417:2	0/1:2,119:30:121:0.983:2	0/1:49,62:30:112:0.559:2
chr11	114569054	rs1712838	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,46:32:97:0.474:2	0/1:32,37:32:69:0.536:2	0/1:0,12:33:12:1.00:2	0/1:0,106:32:106:1.00:2	0/1:52,45:31:97:0.464:2	0/1:72,42:32:115:0.368:2	0/1:0,109:32:109:1.00:2	0/1:2,107:32:109:0.982:2	0/1:62,46:32:108:0.426:2	./.	0/1:61,39:32:100:0.390:2
chr11	114569445	rs112829027	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,14:33:41:0.341:2
chr11	114576626	rs1356428	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,16:31:16:1.00:2	0/1:53,30:32:83:0.361:2	0/1:27,17:31:44:0.386:2	./.	0/1:21,18:31:39:0.462:2	0/1:0,75:32:75:1.00:2	0/1:47,36:32:83:0.434:2	./.	0/1:64,50:32:114:0.439:2
chr11	116631482	rs61730763	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,37:32:80:0.463:2	./.	./.	./.	./.	./.	./.	./.
chr11	116631573	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:32:159:0.025:2	./.
chr11	116633825	rs918144	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,13:31:26:0.500:2	0/1:9,14:32:23:0.609:2	./.	0/1:20,10:32:30:0.333:2	0/1:13,11:31:24:0.458:2	0/1:0,36:32:36:1.00:2	./.	./.	0/1:22,9:32:31:0.290:2	0/1:19,20:33:39:0.513:2	0/1:1,36:32:37:0.973:2
chr11	116633862	rs11820589	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,18:33:44:0.409:2	./.	0/1:24,21:31:45:0.467:2
chr11	116655600	rs35120633	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,87:32:169:0.515:2	./.	0/1:86,80:31:166:0.482:2
chr11	116662331	rs12287066	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,83:31:184:0.451:2	./.	0/1:63,71:30:134:0.530:2
chr11	116662407	rs3135506	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,52:33:111:0.468:2	./.	0/1:54,55:32:109:0.505:2
chr11	116662579	rs651821	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:0,43:32:43:1.00:2	0/1:7,4:32:11:0.364:2	0/1:0,67:31:67:1.00:2	0/1:56,40:31:96:0.417:2	0/1:0,75:31:75:1.00:2	0/1:0,81:32:82:1.00:2	0/1:0,108:31:108:1.00:2	0/1:41,51:33:92:0.554:2	0/1:0,74:32:74:1.00:2	0/1:0,76:32:76:1.00:2
chr11	116691634	rs5110	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,46:32:92:0.500:2	./.	./.	./.	./.
chr11	116691675	rs675	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:99,58:30:157:0.369:2	./.	./.	./.	./.	./.	./.
chr11	116692293	rs12721043	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:33:9:0.333:2
chr11	116692334	rs5104	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,6:30:6:1.00:2	0/1:0,4:31:4:1.00:2	./.	0/1:0,3:30:3:1.00:2	./.	0/1:0,11:31:11:1.00:2	0/1:0,8:28:8:1.00:2	0/1:0,8:31:8:1.00:2	0/1:2,4:33:6:0.667:2	0/1:0,5:31:6:1.00:2	0/1:0,7:30:7:1.00:2
chr11	116692558	rs5101	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,36:31:82:0.439:2	./.	./.	./.	./.	./.	./.	./.
chr11	116693464	rs5092	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:33:55:1.00:2	0/1:1,29:32:30:0.967:2	0/1:6,4:32:10:0.400:2	0/1:0,84:32:84:1.00:2	0/1:54,53:32:107:0.495:2	0/1:1,70:33:71:0.986:2	0/1:2,91:32:93:0.978:2	0/1:0,98:33:98:1.00:2	0/1:47,29:33:76:0.382:2	0/1:0,66:33:66:1.00:2	0/1:0,67:32:67:1.00:2
chr11	116701535	rs4520	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,78:32:78:1.00:2	0/1:0,46:32:46:1.00:2	0/1:8,9:34:17:0.529:2	0/1:0,112:33:112:1.00:2	./.	0/1:0,148:32:148:1.00:2	0/1:4,185:33:189:0.979:2	0/1:0,144:32:144:1.00:2	0/1:74,50:33:125:0.403:2	0/1:0,84:32:84:1.00:2	0/1:36,26:31:62:0.419:2
chr11	116706949	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:30:125:0.032:2	./.	./.	./.	./.	./.
chr11	116728630	rs12225230	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,68:30:134:0.507:2	./.	./.	0/1:58,65:30:123:0.528:2
chr11	116728957	rs373958184	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,46:30:110:0.418:2	0/1:41,39:30:80:0.488:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	116729013	rs539858	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,75:32:130:0.577:2	0/1:62,51:31:113:0.451:2	./.	./.	./.	./.	./.	./.
chr11	116729196	rs541586	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,98:33:183:0.536:2	0/1:96,86:32:182:0.473:2	./.	./.	./.	./.	./.	./.
chr11	117050007	rs61729992	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,34:29:68:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr11	117052532	rs61729990	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,35:30:75:0.467:2	./.	./.	./.	0/1:36,30:31:66:0.455:2	0/1:29,23:31:53:0.442:2
chr11	117053433	rs2046150	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,83:29:170:0.488:2	./.	./.	./.	0/1:67,61:31:128:0.477:2	0/1:71,66:30:137:0.482:2
chr11	117062989	rs12285035	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,49:31:104:0.471:2	./.	./.	./.	./.	./.	./.	./.
chr11	117063003	rs17120425	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,72:31:172:0.419:2	./.	./.	./.	./.	./.	./.
chr11	117073821	rs74335466	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,14:14:81:0.173:2	./.	./.
chr11	117074109	rs12970	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,53:31:133:0.398:2	0/1:49,54:31:103:0.524:2	./.	./.	./.	0/1:73,45:31:118:0.381:2	0/1:86,57:32:143:0.399:2
chr11	117076875	rs139944026	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,41:31:186:0.220:2	./.	./.	./.	0/1:150,34:32:184:0.185:2	0/1:131,57:32:189:0.303:2
chr11	117077034	rs28590104	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:28:5:0.800:2	0/1:30,36:31:66:0.545:2	0/1:0,45:30:45:1.00:2	0/1:0,80:30:80:1.00:2	./.	./.	./.	0/1:22,47:30:69:0.681:2	0/1:22,49:31:71:0.690:2
chr11	117078702	rs200068220	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:68,14:33:82:0.171:2	0/1:147,36:32:183:0.197:2	0/1:106,82:33:188:0.436:2	0/1:140,48:33:188:0.255:2	./.	./.	./.	0/1:139,41:32:180:0.228:2	0/1:141,33:31:174:0.190:2
chr11	117079612	rs145370185	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,42:31:197:0.213:2	./.	./.	./.
chr11	117079626	rs202038275	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,14:27:196:0.071:2	./.	./.	./.	0/1:170,16:29:186:0.086:2	0/1:164,23:29:187:0.123:2
chr11	117079654	rs471009	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,11:32:188:0.059:2	./.	./.	./.	0/1:181,9:33:190:0.047:2	0/1:171,15:30:186:0.081:2
chr11	117079687	rs148329047	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,39:31:178:0.219:2	./.	./.	./.	./.	./.	./.	./.
chr11	117096652	rs2277287	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,45:31:91:0.495:2	./.	0/1:51,61:31:112:0.545:2	./.	0/1:37,41:31:78:0.526:2	0/1:2,52:31:54:0.963:2
chr11	117097931	rs45528535	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,33:31:89:0.371:2	0/1:53,45:31:98:0.459:2	./.	./.	./.	./.	./.	./.
chr11	117097952	rs2306473	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,49:32:105:0.467:2	./.	./.	0/1:39,44:31:83:0.530:2
chr11	117160347	rs539765	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,93:27:93:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,116:28:116:1.00:2	0/1:0,144:28:144:1.00:2	0/1:0,126:28:126:1.00:2	0/1:0,156:28:156:1.00:2	0/1:0,186:28:186:1.00:2	0/1:0,148:29:148:1.00:2	0/1:0,96:29:96:1.00:2	0/1:0,112:28:112:1.00:2
chr11	117160380	rs143544031	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,41:31:99:0.414:2	0/1:30,34:32:64:0.531:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	117163824	rs638405	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,6:33:17:0.353:2	0/1:60,45:32:105:0.429:2	./.	0/1:0,115:31:115:1.00:2	./.	./.	0/1:63,55:33:118:0.466:2	./.	./.
chr11	117186506	rs28917234	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.
chr11	117222592	rs490262	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,67:31:67:1.00:2	./.	0/1:25,40:31:65:0.615:2	./.	./.	./.	./.	./.
chr11	117252415	rs200074826	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,24:30:70:0.343:2	./.	./.	./.
chr11	117252437	rs117083334	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,31:31:62:0.500:2	./.	./.	./.	./.	./.
chr11	117252489	rs897836	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:31:48:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,35:31:35:1.00:2
chr11	117266312	rs2305830	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:31,37:31:68:0.544:2	0/1:26,12:32:38:0.316:2	0/1:9,12:33:21:0.571:2	./.	./.	./.	0/1:53,47:32:100:0.470:2	./.	0/1:47,35:33:82:0.427:2	0/1:0,58:31:58:1.00:2	0/1:0,73:31:73:1.00:2
chr11	117267884	rs573455	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,40:30:40:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,3:29:3:1.00:2	./.	0/1:36,39:29:75:0.520:2	./.	0/1:42,35:30:77:0.455:2	./.	0/1:0,48:31:48:1.00:2	0/1:0,51:29:51:1.00:2	0/1:0,60:30:60:1.00:2
chr11	117282800	rs522885	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:32:71:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,95:31:95:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,109:31:109:1.00:2	0/1:0,116:31:116:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,74:32:74:1.00:2	0/1:2,75:32:77:0.974:2
chr11	117303108	rs76347292	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,12:30:28:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	117303858	rs11216382	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,40:32:83:0.482:2	0/1:17,24:31:41:0.585:2	./.	./.	./.	0/1:48,73:33:121:0.603:2	./.	./.	./.	./.	./.
chr11	117304196	rs2242133	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,8:31:45:0.178:2	./.	./.	./.	./.	./.	./.	./.
chr11	117307972	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,65:31:120:0.542:2	./.	./.	./.	./.
chr11	117308795	rs2253440	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,72:31:168:0.429:2	0/1:56,56:31:112:0.500:2	0/1:90,71:31:161:0.441:2	./.	./.	./.	0/1:39,34:32:73:0.466:2
chr11	117309989	rs11216386	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,66:32:141:0.468:2	./.	./.	./.	./.
chr11	117310022	rs11216387	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,74:29:165:0.448:2	./.	./.	./.	./.
chr11	117310107	rs61730454	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,24:31:74:0.324:2	./.
chr11	117335722	rs538847	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,107:32:107:1.00:2	0/1:0,57:31:57:1.00:2	0/1:12,4:32:16:0.250:2	0/1:80,66:33:146:0.452:2	./.	0/1:97,81:33:178:0.455:2	0/1:0,147:32:147:1.00:2	0/1:90,85:32:175:0.486:2	./.	./.	0/1:77,60:32:137:0.438:2
chr11	117342672	rs34573317	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,71:29:173:0.410:2	./.	./.	./.	./.	./.
chr11	117351231	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:32:84:0.048:2	./.	./.	./.	./.	./.
chr11	117376413	rs34138305	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,6:32:10:0.600:2	0/1:26,25:33:51:0.490:2	./.	0/1:19,30:32:49:0.612:2	./.	./.	./.	./.	./.
chr11	117391966	rs2276340	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:32:8:0.375:2	./.	./.	./.	./.	./.	0/1:32,50:32:82:0.610:2	./.	./.
chr11	117403235	rs3741280	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,11:29:12:0.917:2	./.	./.	0/1:60,40:31:100:0.400:2	0/1:49,27:31:76:0.355:2	./.	0/1:44,41:32:85:0.482:2	./.	./.
chr11	117691386	rs869789	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,6:30:24:0.250:2	./.
chr11	117691393	rs144519777	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,11:31:29:0.379:2	./.	./.	./.
chr11	117693255	rs529623	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,49:31:51:0.961:2	0/1:0,24:31:24:1.00:2	./.	0/1:47,38:31:85:0.447:2	0/1:46,40:32:86:0.465:2	0/1:49,46:32:95:0.484:2	0/1:1,85:32:86:0.988:2	0/1:0,103:32:103:1.00:2	0/1:51,31:34:82:0.378:2	./.	./.
chr11	117698762	rs7117314	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,19:31:39:0.487:2	0/1:13,12:31:25:0.480:2	./.	0/1:2,74:31:76:0.974:2	0/1:43,40:30:83:0.482:2	0/1:36,29:31:65:0.446:2	0/1:55,25:31:80:0.313:2	0/1:50,30:30:80:0.375:2	0/1:45,21:32:66:0.318:2	0/1:25,28:32:53:0.528:2	./.
chr11	117711062	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:29:62:0.065:2	./.	./.
chr11	117711092	rs71482118	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,17:31:41:0.415:2
chr11	117772955	rs73020481	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,13:32:41:0.317:2	./.	./.	./.	./.	./.	./.	./.
chr11	117774394	rs59590191	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,49:32:108:0.454:2	./.	./.	./.	./.	./.	./.	./.
chr11	117781435	rs2155194	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:32:63:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,58:33:58:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,97:32:97:1.00:2	0/1:2,60:34:62:0.968:2	0/1:0,59:33:59:1.00:2	0/1:0,61:32:61:1.00:2
chr11	117789272	rs371192091	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,44:32:82:0.537:2	./.	./.
chr11	117789342	rs75037497	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,9:27:46:0.196:2	./.	./.	./.	./.	./.	./.
chr11	117789345	rs33925760	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,9:31:46:0.196:2	./.	./.	./.	./.	./.	./.
chr11	117789357	rs199628947	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,3:33:32:0.094:2	./.	./.	./.	./.	./.	./.
chr11	117789360	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,4:29:31:0.129:2	./.	./.	./.	./.	./.	./.
chr11	117789386	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,4:24:33:0.121:2	./.	./.	./.	./.	./.
chr11	117789482	rs368879364	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,3:32:42:0.071:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	117859209	rs4252249	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,21:30:53:0.396:2	0/1:16,12:30:28:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	117864047	rs2256111	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:31:10:0.400:2	0/1:0,65:30:65:1.00:2	0/1:24,41:29:65:0.631:2	0/1:23,39:30:62:0.629:2	0/1:36,28:31:64:0.438:2	0/1:44,34:31:78:0.436:2	0/1:27,28:31:55:0.509:2	0/1:0,35:31:35:1.00:2	0/1:30,27:29:57:0.474:2
chr11	117864063	rs3135932	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:34,17:33:51:0.333:2	0/1:12,8:32:20:0.400:2	0/1:3,5:33:8:0.625:2	./.	./.	0/1:39,22:31:61:0.361:2	0/1:28,37:33:65:0.569:2	0/1:32,32:32:64:0.500:2	./.	./.	./.
chr11	117864113	rs2228054	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,14:32:30:0.467:2	0/1:9,6:32:15:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	117869670	rs2229113	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,11:31:22:0.500:2	0/1:6,3:30:9:0.333:2	0/1:2,5:31:7:0.714:2	0/1:0,24:31:24:1.00:2	0/1:15,5:33:20:0.250:2	0/1:10,4:25:14:0.286:2	0/1:21,17:29:38:0.447:2	0/1:18,17:30:35:0.486:2	0/1:19,9:32:28:0.321:2	0/1:0,17:31:17:1.00:2	0/1:9,10:30:19:0.526:2
chr11	117869878	rs2229114	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,29:30:71:0.408:2	./.	./.	./.
chr11	117870073	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:31:92:0.043:2	./.
chr11	117965530	rs2276122	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:38,61:32:99:0.616:2	0/1:22,35:32:57:0.614:2	./.	./.	./.	./.	./.	0/1:3,179:32:182:0.984:2	./.	./.	./.
chr11	117965595	rs2276123	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:52,30:33:82:0.366:2	0/1:37,21:32:58:0.362:2	./.	0/1:2,104:32:106:0.981:2	0/1:92,42:31:134:0.313:2	0/1:1,104:31:105:0.990:2	0/1:101,48:32:149:0.322:2	./.	./.	./.	./.
chr11	117982495	rs1941635	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:31:36:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,38:31:38:1.00:2	0/1:1,42:31:43:0.977:2	0/1:0,65:32:65:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,35:30:35:1.00:2
chr11	117985897	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:155,4:31:160:0.025:2	./.	./.	./.	./.	./.	./.
chr11	117988082	rs642215	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,44:33:88:0.500:2	0/1:30,25:32:55:0.455:2	0/1:0,8:33:8:1.00:2	0/1:0,112:33:112:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,95:32:95:1.00:2	0/1:1,95:32:96:0.990:2	0/1:57,57:32:114:0.500:2	0/1:0,87:33:87:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,74:33:74:1.00:2
chr11	117988654	rs7123209	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:33:14:0.429:2	./.	0/1:26,25:32:51:0.490:2	./.	./.	./.	0/1:0,64:33:64:1.00:2	0/1:0,47:32:47:1.00:2	0/1:3,61:32:64:0.953:2
chr11	118015832	rs45539032	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,93:30:189:0.492:2	./.	./.	./.	./.	./.	./.
chr11	118039455	rs17121819	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:178,4:34:182:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr11	118047107	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:29:60:0.067:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	118068752	rs2298831	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,12:32:23:0.522:2	./.	0/1:30,45:31:75:0.600:2	./.	./.	./.	0/1:78,100:33:178:0.562:2	./.	0/1:89,91:31:180:0.506:2
chr11	118074317	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:31:64:0.063:2	./.	./.	./.	./.
chr11	118074337	rs1793174	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,30:32:63:0.476:2	0/1:17,12:28:29:0.414:2	0/1:0,8:30:8:1.00:2	0/1:0,82:31:82:1.00:2	0/1:1,48:32:49:0.980:2	0/1:28,31:30:60:0.525:2	0/1:23,28:30:51:0.549:2	./.	0/1:51,21:30:72:0.292:2	0/1:1,55:31:57:0.982:2	0/1:42,34:31:76:0.447:2
chr11	118081345	rs17121881	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,45:31:92:0.489:2	0/1:28,32:32:60:0.533:2	0/1:11,9:29:20:0.450:2	0/1:1,124:31:125:0.992:2	0/1:62,56:30:118:0.475:2	0/1:87,72:30:159:0.453:2	0/1:63,54:31:117:0.462:2	./.	./.	0/1:68,51:31:119:0.429:2	./.
chr11	118081425	rs76639053	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,32:31:66:0.485:2	./.	./.	./.	./.	./.	./.
chr11	118083664	rs1715429	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,46:32:93:0.495:2	0/1:19,25:32:44:0.568:2	0/1:0,14:32:14:1.00:2	0/1:0,101:32:101:1.00:2	0/1:2,64:32:66:0.970:2	0/1:53,57:32:111:0.518:2	0/1:47,43:32:90:0.478:2	./.	0/1:75,72:33:148:0.490:2	0/1:0,77:32:77:1.00:2	0/1:62,50:32:112:0.446:2
chr11	118107805	rs1793140	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:98,91:32:189:0.481:2	0/1:61,40:32:101:0.396:2	0/1:1,28:32:29:0.966:2	0/1:0,188:32:188:1.00:2	0/1:2,188:31:190:0.989:2	0/1:117,74:32:191:0.387:2	0/1:95,94:32:189:0.497:2	0/1:191,4:33:195:0.021:2	0/1:118,74:32:192:0.385:2	0/1:0,176:32:176:1.00:2	0/1:100,84:32:185:0.457:2
chr11	118110977	rs2853006	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:79,84:33:165:0.515:2	0/1:53,65:33:118:0.551:2	0/1:0,45:33:45:1.00:2	0/1:0,176:33:177:1.00:2	0/1:2,178:33:180:0.989:2	0/1:93,90:33:183:0.492:2	0/1:97,91:33:188:0.484:2	./.	0/1:92,84:34:176:0.477:2	0/1:0,189:32:189:1.00:2	0/1:92,83:33:175:0.474:2
chr11	118134830	rs36040758	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,23:31:47:0.489:2	./.	./.	./.
chr11	118134885	rs181660176	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,17:29:40:0.425:2	./.	./.	./.
chr11	118178007	rs1126924	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:16,21:32:37:0.568:2	0/1:12,11:32:23:0.478:2	./.	./.	0/1:20,6:30:26:0.231:2	./.	0/1:13,9:32:22:0.409:2	./.	./.	0/1:17,14:32:31:0.452:2	0/1:29,22:32:51:0.431:2
chr11	118179197	rs1599810	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,10:33:28:0.357:2	0/1:5,8:31:13:0.615:2	./.	0/1:0,19:32:19:1.00:2	0/1:0,13:32:13:1.00:2	./.	0/1:9,11:32:20:0.550:2	./.	0/1:22,14:33:36:0.389:2	0/1:0,17:32:17:1.00:2	0/1:29,16:32:45:0.356:2
chr11	118182829	rs1945765	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,66:32:70:0.943:2	0/1:18,4:32:22:0.182:2	./.	./.	./.	0/1:76,43:33:119:0.361:2	0/1:54,31:31:85:0.365:2	./.
chr11	118185140	rs2298821	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:16,8:30:24:0.333:2	0/1:6,7:29:13:0.538:2	0/1:0,2:32:2:1.00:2	./.	0/1:22,9:29:31:0.290:2	./.	0/1:11,18:29:29:0.621:2	./.	./.	0/1:9,14:30:23:0.609:2	0/1:18,12:29:30:0.400:2
chr11	118186235	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,4:33:28:0.143:2	./.
chr11	118209960	rs2276424	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,32:31:73:0.438:2	0/1:17,22:32:39:0.564:2	0/1:0,11:33:11:1.00:2	0/1:0,63:32:63:1.00:2	0/1:27,18:32:45:0.400:2	./.	0/1:42,34:32:76:0.447:2	0/1:0,71:32:71:1.00:2	0/1:0,68:33:68:1.00:2	0/1:26,32:32:58:0.552:2	0/1:0,62:32:62:1.00:2
chr11	118221349	rs3753059	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:104,60:32:164:0.366:2	0/1:76,41:32:117:0.350:2	./.	0/1:111,76:32:187:0.406:2	0/1:113,65:32:178:0.365:2	./.	./.	./.	0/1:110,73:34:183:0.399:2	./.	./.
chr11	118221350	rs3753058	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:105,60:32:165:0.364:2	0/1:76,43:31:119:0.361:2	./.	0/1:113,77:31:190:0.405:2	0/1:111,66:31:177:0.373:2	./.	./.	./.	0/1:109,73:33:182:0.401:2	./.	./.
chr11	118272454	rs189530708	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,28:32:51:0.549:2	./.	./.	./.	./.	./.	./.	./.
chr11	118355642	rs9332801	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,64:32:132:0.485:2	./.	./.	./.	./.
chr11	118368665	rs7107305	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,24:32:45:0.533:2	./.	./.	./.	./.
chr11	118373196	rs377156559	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:142,4:34:146:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr11	118373861	rs2071702	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,6:31:18:0.333:2	./.	./.	./.	./.
chr11	118375478	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,4:32:33:0.121:2	./.	./.
chr11	118399392	rs118041771	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,61:30:134:0.455:2	./.	./.	./.	./.	./.
chr11	118402962	rs45558732	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,22:30:42:0.524:2	./.	./.	./.	./.
chr11	118404196	rs7129371	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,38:30:79:0.481:2	./.	./.	./.	./.	./.	./.
chr11	118404804	rs6589664	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,4:28:8:0.500:2	0/1:36,37:31:73:0.507:2	0/1:27,28:31:55:0.509:2	./.	./.	0/1:41,40:31:81:0.494:2	./.	0/1:0,64:32:64:1.00:2	./.
chr11	118405068	rs12289253	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,7:32:25:0.280:2	0/1:7,3:29:10:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	118405305	rs45505501	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,24:32:54:0.444:2	0/1:15,14:32:29:0.483:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	118430519	rs11552421	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:34,24:31:58:0.414:2	0/1:19,11:31:30:0.367:2	./.	./.	0/1:17,12:27:29:0.414:2	./.	./.	./.	./.	./.	./.
chr11	118454628	rs151181680	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,37:31:96:0.385:2	./.	./.	./.	./.
chr11	118471423	rs11216925	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:8,11:33:19:0.579:2	./.	./.	./.	0/1:3,7:30:10:0.700:2	./.	./.	./.	./.	./.	./.
chr11	118502121	rs17614795	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:33:6:0.500:2	./.
chr11	118509668	rs483598	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,23:31:53:0.434:2	0/1:19,15:33:34:0.441:2	0/1:2,6:32:8:0.750:2	0/1:34,38:32:72:0.528:2	0/1:36,38:32:74:0.514:2	0/1:30,33:32:63:0.524:2	./.	0/1:49,49:31:98:0.500:2	0/1:35,44:33:79:0.557:2	0/1:0,54:32:54:1.00:2	0/1:0,74:31:74:1.00:2
chr11	118514625	rs11216938	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,5:28:18:0.278:2	./.	./.	./.	0/1:10,7:32:17:0.412:2	0/1:2,16:30:18:0.889:2
chr11	118526306	rs150576411	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,21:31:40:0.525:2	./.	./.	./.	./.	./.	./.	./.
chr11	118529017	rs6589669	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,112:32:112:1.00:2	0/1:0,83:32:84:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,143:32:143:1.00:2	0/1:0,167:32:167:1.00:2	0/1:0,163:32:164:1.00:2	0/1:0,154:32:154:1.00:2	0/1:0,164:32:164:1.00:2	0/1:0,126:32:126:1.00:2	0/1:0,167:32:167:1.00:2	0/1:0,106:32:106:1.00:2
chr11	118529069	rs6589670	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,110:31:110:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,135:32:135:1.00:2	0/1:0,128:31:128:1.00:2	0/1:0,140:32:140:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,152:31:152:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,92:31:92:1.00:2	0/1:0,76:31:76:1.00:2
chr11	118529078	rs6589671	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,109:31:109:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,142:31:143:1.00:2	0/1:0,124:32:124:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,164:32:164:1.00:2	0/1:0,107:32:107:1.00:2	0/1:0,93:30:93:1.00:2	0/1:0,77:30:77:1.00:2
chr11	118529127	rs7928371	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:31:14:0.286:2	./.	./.	0/1:85,67:30:152:0.441:2	./.	./.	./.	0/1:55,47:29:102:0.461:2	0/1:3,78:29:82:0.963:2
chr11	118530611	rs2276065	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,15:29:35:0.429:2	./.	./.	./.	0/1:16,13:29:29:0.448:2	0/1:0,31:28:31:1.00:2
chr11	118531249	rs371512027	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:191,6:32:197:0.030:2	./.	./.	./.	./.	./.	./.
chr11	118531367	rs200440695	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,89:33:169:0.527:2
chr11	118534082	rs10790256	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,9:31:13:0.692:2	./.	./.	0/1:67,46:30:113:0.407:2	./.	./.	./.	0/1:69,57:31:126:0.452:2	0/1:2,131:31:133:0.985:2
chr11	118754649	rs10892307	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,23:33:53:0.434:2	./.	./.	./.	./.
chr11	118764442	rs73011422	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,53:31:108:0.491:2
chr11	118765255	rs147267963	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,23:31:38:0.605:2	./.	./.	./.	./.	./.	./.	./.
chr11	118765267	rs598207	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,14:32:38:0.368:2	0/1:10,10:33:20:0.500:2	./.	./.	./.	0/1:20,18:31:38:0.474:2	./.	0/1:22,12:32:34:0.353:2	./.	0/1:18,11:32:29:0.379:2	0/1:12,8:32:21:0.400:2
chr11	118765600	rs3922	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,30:31:45:0.682:2	0/1:20,30:29:50:0.600:2	./.	./.	0/1:1,47:25:48:0.979:2	0/1:30,25:28:55:0.455:2	0/1:0,67:27:67:1.00:2	0/1:39,25:28:64:0.391:2	./.	0/1:41,25:29:66:0.379:2	0/1:33,21:31:54:0.389:2
chr11	118765688	rs676925	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:22,30:33:52:0.577:2	0/1:19,19:32:38:0.500:2	0/1:8,5:34:13:0.385:2	./.	./.	0/1:43,32:32:75:0.427:2	./.	0/1:34,30:32:64:0.469:2	./.	0/1:52,30:32:82:0.366:2	0/1:37,31:32:68:0.456:2
chr11	118766018	rs45627033	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,7:32:20:0.350:2	0/1:4,5:32:9:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	118769442	rs7104819	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,25:30:44:0.568:2	0/1:12,15:30:27:0.556:2	./.	./.	0/1:2,40:29:42:0.952:2	0/1:45,31:29:76:0.408:2	0/1:2,46:28:48:0.958:2	0/1:41,31:27:72:0.431:2	./.	0/1:27,14:28:41:0.341:2	0/1:28,23:28:51:0.451:2
chr11	118769604	rs61751532	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,44:31:100:0.440:2	./.	./.
chr11	118770809	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:140,4:32:144:0.028:2	./.	./.	./.	./.	./.	./.
chr11	118828867	rs45530531	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,51:31:109:0.468:2
chr11	118828942	rs623500	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,30:33:83:0.361:2	./.	./.	./.	./.	./.	./.	./.
chr11	118849720	rs45602538	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,21:33:52:0.404:2	./.
chr11	118886089	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:31:72:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	118886117	rs10111	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,40:31:96:0.417:2	0/1:51,33:31:84:0.393:2	0/1:42,45:31:87:0.517:2	./.	./.	./.	./.	./.
chr11	118886587	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:33:186:0.022:2	./.	./.	./.
chr11	118886588	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,5:29:185:0.027:2	./.	./.	./.
chr11	118886603	rs149825323	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,49:32:102:0.480:2	./.	./.	./.	./.	./.	./.	./.
chr11	118888683	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:33:64:0.063:2	./.	./.
chr11	118888722	rs149646116	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,4:31:37:0.108:2	./.	./.	./.	./.	./.	./.
chr11	118889028	rs114452850	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,16:30:35:0.457:2	./.	./.	./.	./.	./.	./.	./.
chr11	118890908	rs61730037	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,31:28:62:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr11	118895686	rs8192696	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,31:33:81:0.383:2	0/1:1,110:32:111:0.991:2	0/1:48,40:32:88:0.455:2	./.	./.	./.	./.	./.
chr11	118895742	rs199764888	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,4:32:79:0.051:2	./.	./.	./.	./.	./.	./.
chr11	118899102	rs34123220	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,21:33:46:0.457:2	./.	./.	./.	./.	./.	./.	./.
chr11	118919206	rs568922	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,43:30:43:1.00:2	0/1:0,20:29:20:1.00:2	./.	0/1:41,30:30:71:0.423:2	0/1:0,70:29:70:1.00:2	0/1:0,65:30:65:1.00:2	0/1:0,66:29:66:1.00:2	0/1:0,74:29:74:1.00:2	0/1:0,76:31:76:1.00:2	0/1:0,59:30:60:1.00:2	0/1:0,61:28:61:1.00:2
chr11	118925341	rs538478	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,17:31:38:0.447:2	0/1:18,16:31:34:0.471:2	./.	./.	./.	0/1:45,30:30:75:0.400:2	0/1:51,47:31:98:0.480:2	0/1:63,29:31:92:0.315:2	0/1:34,27:32:61:0.443:2	0/1:28,25:30:54:0.472:2	0/1:25,20:31:45:0.444:2
chr11	118940957	rs1784302	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:30,19:33:49:0.388:2	0/1:17,17:32:34:0.500:2	./.	./.	0/1:0,27:31:27:1.00:2	0/1:35,26:32:61:0.426:2	0/1:38,23:32:61:0.377:2	0/1:30,21:32:51:0.412:2	0/1:33,29:32:62:0.468:2	0/1:22,18:32:40:0.450:2	0/1:34,19:31:53:0.358:2
chr11	118947634	rs540261	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,47:32:94:0.500:2	0/1:21,16:31:37:0.432:2	./.	./.	./.	0/1:65,50:31:115:0.435:2	0/1:105,76:31:181:0.420:2	0/1:91,61:32:152:0.401:2	0/1:94,30:33:124:0.242:2	0/1:56,46:32:102:0.451:2	0/1:65,41:32:107:0.387:2
chr11	118949331	rs1177562	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,24:30:44:0.545:2	0/1:19,13:29:32:0.406:2	./.	./.	0/1:0,47:31:47:1.00:2	0/1:12,27:31:39:0.692:2	0/1:21,22:32:43:0.512:2	0/1:18,29:31:47:0.617:2	0/1:26,31:32:57:0.544:2	0/1:31,16:31:47:0.340:2	0/1:36,24:31:60:0.400:2
chr11	118952173	rs15818	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:66,59:33:125:0.472:2	0/1:34,37:32:71:0.521:2	0/1:1,9:33:10:0.900:2	./.	0/1:0,163:32:163:1.00:2	0/1:88,52:32:140:0.371:2	0/1:91,76:33:167:0.455:2	0/1:99,77:32:176:0.438:2	0/1:86,83:34:169:0.491:2	0/1:72,53:33:125:0.424:2	0/1:66,56:33:122:0.459:2
chr11	118959331	rs17075	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,29:31:61:0.475:2	0/1:20,24:32:44:0.545:2	0/1:0,8:31:8:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,86:30:86:1.00:2	0/1:52,38:31:90:0.422:2	0/1:34,22:31:56:0.393:2	0/1:65,45:31:110:0.409:2	0/1:35,50:32:85:0.588:2	0/1:47,28:30:75:0.373:2	0/1:48,38:31:87:0.442:2
chr11	118962230	rs1131488	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:39,25:30:64:0.391:2	0/1:34,19:32:53:0.358:2	./.	./.	0/1:29,43:30:72:0.597:2	./.	0/1:36,38:29:74:0.514:2	0/1:38,52:30:90:0.578:2	./.	0/1:36,21:31:57:0.368:2	0/1:38,28:30:66:0.424:2
chr11	118962804	rs28990987	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,24:29:48:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr11	118962816	rs1784304	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,15:31:25:0.600:2	0/1:14,6:31:20:0.300:2	./.	0/1:26,24:30:50:0.480:2	0/1:37,37:30:74:0.500:2	0/1:40,23:30:63:0.365:2	./.	0/1:31,18:31:49:0.367:2	./.	0/1:0,34:31:34:1.00:2	./.
chr11	118963880	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:32:86:0.047:2	./.	./.	./.	./.	./.
chr11	118966122	rs28990980	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:29:5:0.600:2	./.	./.	./.
chr11	118967697	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:31:106:0.038:2	./.	./.	./.	./.	./.
chr11	118967758	rs643788	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,12:28:17:0.706:2	0/1:80,80:29:160:0.500:2	0/1:85,95:29:180:0.528:2	0/1:0,142:29:142:1.00:2	0/1:0,137:30:138:1.00:2	0/1:102,80:29:182:0.440:2	0/1:76,67:29:143:0.469:2	0/1:0,108:30:108:1.00:2	0/1:5,142:29:147:0.966:2
chr11	118983434	rs2239896	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,15:33:33:0.455:2	./.	./.	./.
chr11	118997799	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,4:32:93:0.043:2	./.	./.	./.	./.	./.	./.
chr11	119005088	rs512703	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:31:3:1.00:2	0/1:40,44:31:84:0.524:2	0/1:0,76:31:76:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,37:31:37:1.00:2	0/1:1,50:31:51:0.980:2
chr11	119005132	rs100803	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:29:4:1.00:2	./.	0/1:25,13:31:38:0.342:2	0/1:0,40:31:40:1.00:2	0/1:14,16:31:30:0.533:2	./.	0/1:11,16:30:27:0.593:2	0/1:0,20:31:20:1.00:2	0/1:0,27:31:28:1.00:2
chr11	119020905	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:32:56:0.071:2	./.	./.	./.
chr11	119027691	rs12271907	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,45:32:104:0.433:2	./.	./.	./.	./.	./.	./.	./.
chr11	119043071	rs60612369	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,79:31:197:0.401:2	./.	./.	./.	./.	./.	./.	./.
chr11	119043656	rs643423	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:30:5:1.00:2	0/1:21,22:31:43:0.512:2	0/1:28,8:30:36:0.222:2	0/1:0,44:30:44:1.00:2	0/1:13,15:31:28:0.536:2	0/1:0,31:29:31:1.00:2	0/1:13,12:28:25:0.480:2	0/1:0,34:32:34:1.00:2	0/1:0,50:30:50:1.00:2
chr11	119045300	rs80241894	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,43:33:89:0.483:2	./.	./.	./.	./.	./.	./.	./.
chr11	119045431	rs75827485	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,37:32:88:0.420:2	./.	./.	./.	./.	./.	./.	./.
chr11	119052826	rs4245191	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:29:4:1.00:2	./.	0/1:64,65:32:129:0.504:2	0/1:0,101:32:101:1.00:2	0/1:73,68:32:141:0.482:2	0/1:0,111:31:111:1.00:2	0/1:48,64:33:112:0.571:2	0/1:0,51:32:51:1.00:2	0/1:0,41:32:41:1.00:2
chr11	119056681	rs45612531	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,49:28:101:0.485:2	./.	0/1:54,58:31:112:0.518:2	./.	./.
chr11	119058115	rs374149447	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:34:92:0.044:2	./.	./.	./.	./.
chr11	119059404	rs1815811	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,18:29:18:1.00:2	0/1:92,5:32:97:0.052:2	0/1:54,62:30:116:0.534:2	0/1:1,108:31:110:0.991:2	0/1:53,58:31:111:0.523:2	0/1:0,122:31:123:1.00:2	0/1:53,39:32:92:0.424:2	0/1:0,109:32:109:1.00:2	0/1:4,87:31:92:0.956:2
chr11	119063908	rs2301574	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:31:9:0.667:2	./.	0/1:23,17:32:40:0.425:2	./.	./.	0/1:31,45:32:76:0.592:2	./.	0/1:25,22:32:47:0.468:2	0/1:24,14:30:38:0.368:2
chr11	119064558	rs12417928	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,46:31:95:0.484:2	./.	./.	./.	./.
chr11	119064572	rs76799613	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,43:29:73:0.589:2	./.	./.	./.	./.	./.	./.	./.
chr11	119065709	rs10750139	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:29:8:1.00:2	0/1:23,23:28:46:0.500:2	0/1:18,19:28:37:0.514:2	0/1:0,52:30:52:1.00:2	0/1:26,39:29:65:0.600:2	0/1:1,42:29:43:0.977:2	0/1:0,38:30:38:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,31:29:31:1.00:2
chr11	119144623	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,4:33:85:0.047:2	./.	./.	./.	./.	./.	./.	./.
chr11	119146829	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:33:173:0.023:2	./.
chr11	119181170	rs2249466	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,17:32:28:0.607:2	0/1:10,8:28:18:0.444:2	./.	0/1:0,50:32:51:1.00:2	0/1:26,18:32:44:0.409:2	0/1:1,39:32:40:0.975:2	0/1:28,26:32:54:0.481:2	0/1:13,35:32:48:0.729:2	0/1:0,35:33:35:1.00:2	0/1:40,20:32:60:0.333:2	0/1:0,31:33:31:1.00:2
chr11	119183067	rs35607515	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,78:31:168:0.464:2
chr11	119206066	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:32:172:0.023:2	./.
chr11	119206375	rs2511841	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,77:32:77:1.00:2	0/1:0,70:32:70:1.00:2	./.	0/1:2,179:32:181:0.989:2	0/1:129,65:32:194:0.335:2	0/1:1,142:32:143:0.993:2	./.	./.	0/1:101,61:33:162:0.377:2	0/1:78,70:33:148:0.473:2	0/1:0,134:33:134:1.00:2
chr11	119207341	rs2248863	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:62,39:32:101:0.386:2	0/1:31,42:31:73:0.575:2	./.	0/1:86,87:31:173:0.503:2	0/1:100,64:30:164:0.390:2	./.	./.	./.	./.	./.	./.
chr11	119207387	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,57:32:124:0.460:2	./.	./.	./.	./.
chr11	119207446	rs2248853	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,50:33:101:0.495:2	0/1:31,21:32:52:0.404:2	./.	0/1:65,37:31:102:0.363:2	0/1:45,31:32:76:0.408:2	./.	./.	./.	./.	./.	./.
chr11	119207880	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:31:96:0.042:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	119216231	rs2510143	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:30:33:1.00:2	0/1:0,19:29:19:1.00:2	0/1:0,2:28:2:1.00:2	0/1:24,15:30:39:0.385:2	0/1:0,33:29:33:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,27:28:27:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,33:30:33:1.00:2
chr11	119216279	rs36015759	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,19:29:30:0.633:2	./.	./.	./.	./.
chr11	119216504	rs3814762	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,15:31:21:0.714:2	0/1:11,4:32:15:0.267:2	./.	0/1:27,17:32:44:0.386:2	0/1:2,36:31:38:0.947:2	0/1:13,17:28:30:0.567:2	./.	0/1:1,39:30:40:0.975:2	0/1:21,11:31:32:0.344:2	0/1:8,12:31:20:0.600:2	0/1:0,29:31:29:1.00:2
chr11	119229964	rs2241646	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,43:31:83:0.518:2	0/1:26,20:32:46:0.435:2	0/1:6,7:31:13:0.538:2	0/1:65,46:32:111:0.414:2	0/1:0,78:31:78:1.00:2	0/1:71,43:31:114:0.377:2	./.	0/1:0,140:32:140:1.00:2	0/1:59,67:33:126:0.532:2	0/1:42,65:32:107:0.607:2	0/1:0,89:32:90:1.00:2
chr11	119243670	rs33929148	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,14:32:27:0.519:2	0/1:8,5:31:13:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	119244095	rs587985	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:2,4:32:6:0.667:2	./.	0/1:0,7:29:7:1.00:2	0/1:0,10:29:10:1.00:2	./.	./.	0/1:1,14:30:15:0.933:2	0/1:4,4:30:8:0.500:2	0/1:0,6:33:6:1.00:2	0/1:0,7:32:7:1.00:2
chr11	119510644	rs7940667	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:32:30:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,4:34:4:1.00:2	0/1:24,20:32:44:0.455:2	0/1:0,40:32:40:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,37:32:37:1.00:2
chr11	119986065	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	119986119	rs11604169	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,18:31:38:0.474:2	./.	./.	./.	./.	./.	./.
chr11	119999154	rs75068802	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,21:32:42:0.512:2	./.	./.	./.	./.	./.	./.	./.
chr11	119999191	rs569044	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:31:16:1.00:2	0/1:0,11:32:11:1.00:2	0/1:2,3:32:5:0.600:2	0/1:17,14:32:31:0.452:2	0/1:15,13:31:28:0.464:2	0/1:22,16:32:38:0.421:2	./.	0/1:0,27:32:27:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,28:32:28:1.00:2
chr11	120099658	rs2508489	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,32:26:33:0.970:2	0/1:0,20:26:20:1.00:2	0/1:0,2:28:2:1.00:2	0/1:0,37:28:37:1.00:2	0/1:0,37:27:37:1.00:2	0/1:0,40:27:40:1.00:2	0/1:0,18:26:18:1.00:2	0/1:2,22:27:24:0.917:2	0/1:0,20:28:20:1.00:2	0/1:0,24:28:24:1.00:2	0/1:0,13:28:13:1.00:2
chr11	120099679	rs2508490	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,49:30:50:0.980:2	0/1:0,24:30:24:1.00:2	./.	0/1:0,62:30:62:1.00:2	0/1:0,71:30:71:1.00:2	0/1:0,59:30:60:1.00:2	0/1:0,42:30:42:1.00:2	0/1:2,54:31:56:0.964:2	0/1:0,42:31:42:1.00:2	0/1:23,16:31:39:0.410:2	0/1:23,15:31:38:0.395:2
chr11	120099791	rs2465654	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,34:31:77:0.442:2	./.	./.	./.	./.	./.	./.	./.
chr11	120111041	rs10790371	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,36:30:71:0.507:2	./.	./.	./.	./.	./.	./.	./.
chr11	120139933	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:33:49:0.082:2	./.	./.	./.
chr11	120175749	rs7110845	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,25:27:55:0.455:2	0/1:19,13:27:32:0.406:2	0/1:5,5:30:10:0.500:2	0/1:44,35:29:79:0.443:2	0/1:27,33:28:60:0.550:2	0/1:39,44:28:83:0.530:2	./.	./.	./.	./.	./.
chr11	120198093	rs1893261	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,65:31:155:0.419:2	0/1:49,73:30:122:0.598:2	./.	0/1:69,80:31:149:0.537:2	0/1:2,172:31:174:0.989:2	0/1:73,76:32:149:0.510:2	./.	0/1:105,93:32:198:0.470:2
chr11	120200671	rs117207582	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,13:30:24:0.542:2	./.	./.	./.	./.	./.	./.	0/1:104,95:31:199:0.477:2	0/1:116,78:31:194:0.402:2
chr11	120278477	rs34172482	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,28:30:52:0.538:2	./.
chr11	120292570	rs532006	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:32:80:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,82:31:82:1.00:2	0/1:0,42:31:42:1.00:2	0/1:1,84:31:85:0.988:2	0/1:0,48:32:48:1.00:2	0/1:0,100:31:100:1.00:2	0/1:0,110:32:110:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,117:32:117:1.00:2
chr11	120318628	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	./.	./.	./.	./.	./.	0/1:27,16:30:43:0.372:2	./.
chr11	120322223	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:27:59:0.068:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	120327933	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:32:120:0.033:2	./.	./.	./.	./.	./.
chr11	120328858	rs766894	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,47:33:100:0.470:2	0/1:38,24:31:62:0.387:2	./.	0/1:29,23:32:52:0.442:2	0/1:1,73:31:74:0.986:2	0/1:60,73:32:133:0.549:2	./.	0/1:73,56:31:129:0.434:2
chr11	120351034	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:33:182:0.022:2	./.	./.
chr11	120355230	rs503473	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,14:32:14:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,4:32:4:1.00:2	0/1:12,4:32:16:0.250:2	0/1:8,6:31:14:0.429:2	0/1:0,15:32:15:1.00:2	0/1:12,10:31:22:0.455:2	./.	0/1:16,18:33:34:0.529:2	0/1:20,6:33:26:0.231:2	0/1:15,16:31:31:0.516:2
chr11	120355791	rs9625	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,40:32:141:0.284:2	0/1:47,33:31:80:0.413:2	./.	0/1:83,58:31:141:0.411:2	0/1:1,137:31:138:0.993:2	0/1:76,68:33:144:0.472:2	./.	0/1:103,78:32:181:0.431:2
chr11	120776001	rs2156634	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,29:31:50:0.580:2	0/1:16,10:32:26:0.385:2	0/1:0,7:31:7:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,47:31:47:1.00:2	0/1:25,27:30:52:0.519:2	0/1:0,42:30:42:1.00:2	0/1:1,63:30:64:0.984:2
chr11	120823608	rs2298725	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,45:32:76:0.592:2	0/1:35,25:32:60:0.417:2	./.	0/1:51,67:32:118:0.568:2	0/1:33,37:31:70:0.529:2	./.	0/1:32,52:32:84:0.619:2	./.	0/1:43,44:33:87:0.506:2	0/1:36,41:32:77:0.532:2	./.
chr11	120827609	rs644057	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,9:31:26:0.346:2	0/1:9,14:31:23:0.609:2	./.	0/1:20,14:33:34:0.412:2	0/1:20,12:31:32:0.375:2	0/1:24,31:33:55:0.564:2	0/1:31,38:32:69:0.551:2	./.	0/1:0,38:33:38:1.00:2	0/1:0,30:32:30:1.00:2	./.
chr11	120918288	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:34:128:0.031:2	./.	./.	./.
chr11	120973430	rs35507522	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,34:30:77:0.442:2	0/1:23,21:29:44:0.477:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	120989335	rs612969	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:29:13:0.385:2	./.	./.	0/1:0,65:30:65:1.00:2	0/1:2,62:30:64:0.969:2	0/1:44,57:29:101:0.564:2	0/1:42,44:31:86:0.512:2	0/1:1,53:30:54:0.981:2	0/1:48,44:30:92:0.478:2
chr11	120996292	rs536069	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,20:28:38:0.526:2	0/1:15,10:28:25:0.400:2	0/1:2,5:29:7:0.714:2	0/1:49,28:29:77:0.364:2	0/1:0,33:26:33:1.00:2	0/1:0,53:28:53:1.00:2	0/1:1,35:28:36:0.972:2	0/1:0,66:27:66:1.00:2	0/1:27,19:28:46:0.413:2	0/1:0,38:28:38:1.00:2	0/1:25,27:28:52:0.519:2
chr11	120998942	rs10502247	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,4:33:13:0.308:2	./.	./.	0/1:2,3:32:5:0.600:2	0/1:0,10:32:10:1.00:2	./.	./.	0/1:11,9:30:20:0.450:2	./.	./.	./.
chr11	121000774	rs520805	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,9:31:34:0.265:2	0/1:0,30:31:30:1.00:2	0/1:17,17:31:34:0.500:2	0/1:31,16:33:47:0.340:2	0/1:18,11:31:29:0.379:2	0/1:16,12:33:28:0.429:2
chr11	121000784	rs586473	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,7:33:19:0.368:2	0/1:7,3:32:10:0.300:2	./.	0/1:15,8:32:23:0.348:2	0/1:0,35:30:35:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,30:31:30:1.00:2	0/1:26,16:33:42:0.381:2	0/1:0,28:32:28:1.00:2	0/1:14,13:32:27:0.481:2
chr11	121000865	rs138065050	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,5:28:10:0.500:2	./.
chr11	121016818	rs12275038	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	0/1:4,6:30:10:0.600:2	./.	./.	./.	0/1:5,6:32:11:0.545:2	./.
chr11	121028587	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,5:27:80:0.063:2	./.
chr11	121028666	rs33981325	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,12:31:27:0.444:2	0/1:3,9:33:12:0.750:2	./.	./.	./.	./.
chr11	121032978	rs526433	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:31:43:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,13:28:13:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,35:29:35:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,44:29:44:1.00:2	0/1:0,54:29:55:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,25:30:26:1.00:2	0/1:28,15:31:43:0.349:2
chr11	121038810	rs2155369	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:88,89:30:178:0.503:2	0/1:63,53:31:117:0.457:2	./.	./.	0/1:3,181:30:184:0.984:2	./.	./.	0/1:92,98:30:190:0.516:2	./.	0/1:92,95:31:187:0.508:2	./.
chr11	121358855	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:31:163:0.025:2	./.	./.
chr11	121367626	rs12364988	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,28:30:28:1.00:2	0/1:2,21:30:23:0.913:2	./.	0/1:18,22:30:40:0.550:2	./.	0/1:11,19:30:30:0.633:2	0/1:0,21:29:21:1.00:2	0/1:0,43:29:44:1.00:2	0/1:0,49:31:49:1.00:2	0/1:16,21:28:37:0.568:2	0/1:0,37:30:37:1.00:2
chr11	121367627	rs117260922	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,22:31:40:0.550:2	./.	./.	./.	./.	./.	./.	0/1:25,18:31:43:0.419:2
chr11	121393684	rs2298813	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,14:30:35:0.400:2	./.
chr11	121403182	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:34:119:0.034:2	./.	./.
chr11	121403229	rs636588	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:33:73:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,116:33:116:1.00:2	0/1:0,121:32:121:1.00:2	0/1:0,98:33:98:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,74:32:74:1.00:2
chr11	121425955	rs78274293	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,41:32:101:0.406:2	./.	0/1:44,34:32:78:0.436:2	./.
chr11	121437819	rs1699107	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:33:45:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,56:33:56:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,57:34:57:1.00:2	0/1:0,59:33:59:1.00:2	0/1:0,50:32:50:1.00:2
chr11	121448090	rs2070045	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:38,39:31:77:0.506:2	0/1:19,25:30:44:0.568:2	./.	0/1:65,47:30:112:0.420:2	0/1:1,131:30:132:0.992:2	./.	./.	./.	./.	./.	./.
chr11	121456962	rs1699102	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,15:31:15:1.00:2	0/1:63,72:31:135:0.533:2	./.	0/1:0,134:31:134:1.00:2	0/1:0,125:32:125:1.00:2	0/1:2,140:31:142:0.986:2	0/1:1,99:32:100:0.990:2	0/1:2,105:32:107:0.981:2	0/1:0,97:32:97:1.00:2
chr11	121460846	rs2276412	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,23:33:42:0.548:2	0/1:35,28:31:63:0.444:2
chr11	121475922	rs3824968	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,79:32:79:1.00:2	0/1:0,42:32:42:1.00:2	./.	0/1:52,52:31:104:0.500:2	0/1:0,36:30:36:1.00:2	./.	./.	./.	./.	./.	./.
chr11	121491782	rs1792120	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:32:23:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,31:31:31:1.00:2
chr11	121986671	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:31:94:0.043:2	./.	./.	./.
chr11	122022927	rs543412	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:27,25:32:52:0.481:2	0/1:22,16:32:38:0.421:2	./.	./.	0/1:26,18:32:44:0.409:2	./.	./.	0/1:0,49:32:49:1.00:2	0/1:52,39:34:91:0.429:2	./.	./.
chr11	122646967	rs12790613	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:32:5:0.800:2	./.	./.	0/1:25,16:31:41:0.390:2	0/1:21,17:32:38:0.447:2	./.	./.	./.	./.
chr11	122659918	rs955051	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:42,37:31:79:0.468:2	0/1:22,22:32:44:0.500:2	0/1:5,5:33:10:0.500:2	./.	./.	0/1:1,81:32:82:0.988:2	./.	./.	0/1:48,44:32:92:0.478:2	./.	./.
chr11	122665437	rs872414	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,29:29:57:0.509:2	0/1:34,26:29:60:0.433:2	0/1:6,3:29:9:0.333:2	0/1:60,42:29:102:0.412:2	./.	0/1:1,73:29:74:0.986:2	./.	0/1:53,38:29:91:0.418:2	0/1:0,84:29:84:1.00:2	0/1:42,39:30:81:0.481:2	0/1:63,41:28:104:0.394:2
chr11	122667665	rs111571941	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,95:31:197:0.482:2	./.	./.	./.	./.	./.	./.
chr11	122724745	rs56388952	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,22:29:50:0.440:2	./.	./.	./.	./.	./.	./.
chr11	122724794	rs190108666	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,18:33:31:0.581:2
chr11	122738261	rs2272094	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,24:33:24:1.00:2	0/1:0,90:33:90:1.00:2	0/1:0,130:32:130:1.00:2	0/1:55,66:32:121:0.545:2	0/1:0,107:33:107:1.00:2	0/1:75,56:32:131:0.427:2	0/1:75,60:33:135:0.444:2	0/1:0,85:33:85:1.00:2	0/1:1,115:33:117:0.991:2
chr11	122738718	rs17126930	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,37:32:66:0.561:2	0/1:22,9:31:32:0.290:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	122742050	rs34242434	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,63:30:132:0.477:2	0/1:42,30:29:72:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	122756663	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,3:36:53:0.057:2	./.
chr11	122795688	rs11218891	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:58,55:33:113:0.487:2	0/1:39,20:31:59:0.339:2	0/1:1,20:33:21:0.952:2	./.	./.	./.	0/1:3,145:32:148:0.980:2	0/1:89,70:32:159:0.440:2	./.	0/1:67,60:32:127:0.472:2	./.
chr11	122805187	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,4:32:49:0.082:2	./.	./.	./.	./.	./.	./.
chr11	122805430	rs34439413	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,37:31:69:0.536:2	./.	./.	./.	./.	./.
chr11	122805606	rs33999612	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,17:29:33:0.515:2	./.	./.	./.	./.	./.
chr11	122830085	rs114655120	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,34:32:72:0.472:2	./.	./.	./.	./.	./.
chr11	122928622	rs4802	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,15:28:36:0.417:2	./.	./.	./.	./.	./.
chr11	122928972	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:31:150:0.027:2	./.	./.
chr11	122928979	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:32:113:0.035:2	./.	./.	./.	./.
chr11	122929013	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:33:153:0.026:2	./.	./.	./.	./.
chr11	122929020	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	0/1:169,4:33:173:0.023:2	./.	./.
chr11	122929038	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:174,4:33:178:0.022:2	./.	./.	./.	0/1:176,4:34:180:0.022:2	./.	./.
chr11	122929407	rs1064585	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,34:31:96:0.358:2	./.	./.	./.	./.	./.
chr11	122931430	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:141,4:32:145:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr11	122931436	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:153,4:33:157:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr11	122931448	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:168,4:31:173:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr11	122931470	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,5:33:166:0.030:2	./.
chr11	122932008	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,4:30:32:0.125:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	122944293	rs142456942	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,91:31:165:0.552:2	./.	./.	./.
chr11	123065683	rs2302605	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:31:16:0.563:2	0/1:5,13:30:18:0.722:2	0/1:17,12:31:29:0.414:2	0/1:6,9:32:15:0.600:2	0/1:0,20:30:20:1.00:2	0/1:0,17:31:17:1.00:2	0/1:5,7:30:12:0.583:2	0/1:0,12:31:12:1.00:2
chr11	123396844	rs17740690	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,82:32:161:0.509:2	./.
chr11	123464786	rs118067934	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,24:33:36:0.667:2	./.	./.
chr11	123477352	rs2279519	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:7,9:29:16:0.563:2	0/1:6,5:31:11:0.455:2	0/1:1,3:33:4:0.750:2	./.	./.	0/1:19,18:32:37:0.486:2	0/1:7,13:32:20:0.650:2	./.	./.	./.	0/1:0,48:32:48:1.00:2
chr11	123480981	rs10893053	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:29,13:29:42:0.310:2	0/1:17,16:30:33:0.485:2	0/1:8,5:33:13:0.385:2	./.	./.	0/1:43,27:30:70:0.386:2	0/1:60,37:30:97:0.381:2	./.	./.	./.	0/1:1,70:28:71:0.986:2
chr11	123493225	rs146845869	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,4:31:24:0.167:2	./.	./.	./.
chr11	123493257	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,4:33:21:0.190:2	./.	./.	./.	./.	./.
chr11	123513161	rs1275085	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:34:8:0.500:2	./.	./.	./.	0/1:44,44:32:88:0.500:2	./.	0/1:38,42:33:80:0.525:2	./.	0/1:31,26:32:57:0.456:2
chr11	123596703	rs3183878	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,23:32:49:0.469:2	0/1:33,33:31:66:0.500:2	./.	0/1:43,38:32:81:0.469:2	./.	./.	0/1:45,40:33:85:0.471:2
chr11	123598941	rs2282644	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,40:30:72:0.556:2	0/1:23,25:32:48:0.521:2	./.	0/1:1,65:33:66:0.985:2	0/1:39,19:32:58:0.328:2	./.	./.	./.	./.	./.	0/1:78,36:32:114:0.316:2
chr11	123600475	rs1144507	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:31,26:31:57:0.456:2	0/1:14,17:29:31:0.548:2	0/1:0,9:29:9:1.00:2	./.	0/1:22,37:28:59:0.627:2	0/1:0,68:31:68:1.00:2	0/1:2,69:30:71:0.972:2	./.	0/1:0,53:30:53:1.00:2	0/1:0,47:29:47:1.00:2	0/1:37,28:30:65:0.431:2
chr11	123624658	rs12364099	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:25,13:32:38:0.342:2	0/1:6,6:31:12:0.500:2	./.	./.	./.	./.	0/1:19,14:30:33:0.424:2	0/1:25,20:31:45:0.444:2	0/1:24,12:33:36:0.333:2	0/1:25,5:31:30:0.167:2	./.
chr11	123676231	rs4936845	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:64,43:31:107:0.402:2	0/1:36,28:31:64:0.438:2	./.	0/1:0,97:31:97:1.00:2	0/1:63,57:31:120:0.475:2	./.	./.	./.	0/1:63,86:33:149:0.577:2	./.	0/1:45,50:32:95:0.526:2
chr11	123676388	rs76301014	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,14:31:34:0.412:2	./.	./.	0/1:28,26:31:54:0.481:2	./.	./.	./.
chr11	123676413	rs7952150	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:14,24:32:38:0.632:2	0/1:14,16:32:30:0.533:2	0/1:3,8:31:11:0.727:2	./.	./.	./.	0/1:27,11:31:38:0.289:2	0/1:36,29:32:65:0.446:2	0/1:39,16:33:55:0.291:2	0/1:28,17:32:45:0.378:2	./.
chr11	123753937	rs1939927	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:29:103:1.00:2	0/1:0,71:30:73:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,91:30:91:1.00:2	0/1:1,79:29:81:0.988:2	0/1:2,86:30:88:0.977:2	0/1:49,55:30:105:0.529:2	0/1:61,49:29:111:0.445:2	0/1:0,113:31:113:1.00:2	0/1:40,53:30:94:0.570:2	0/1:0,119:29:120:1.00:2
chr11	123753958	rs35551906	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:31:8:0.375:2	./.	./.	./.	./.	./.	0/1:52,37:33:89:0.416:2	./.	./.
chr11	123754844	rs10893099	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:33:43:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,73:33:73:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,54:33:54:1.00:2	0/1:0,75:33:75:1.00:2	0/1:0,47:34:47:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,61:33:61:1.00:2
chr11	123777302	rs17127947	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,10:30:26:0.385:2	0/1:107,87:30:194:0.448:2	0/1:72,60:29:132:0.455:2	./.	./.	0/1:89,101:29:190:0.532:2	0/1:92,90:31:182:0.495:2	./.	./.
chr11	123777412	rs17127950	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:29:5:0.600:2	0/1:46,40:29:86:0.465:2	0/1:44,47:29:91:0.516:2	./.	./.	0/1:44,31:29:75:0.413:2	0/1:52,48:28:100:0.480:2	./.	./.
chr11	123777497	rs10750250	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:31:73:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,90:30:90:1.00:2	0/1:0,84:29:84:1.00:2	0/1:58,44:30:102:0.431:2	./.	0/1:55,47:30:102:0.461:2	0/1:56,43:31:99:0.434:2	./.	0/1:1,86:31:87:0.989:2
chr11	123777498	rs10893102	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,73:31:73:1.00:2	0/1:0,57:31:57:1.00:2	./.	0/1:49,43:31:92:0.467:2	0/1:47,39:31:86:0.453:2	0/1:58,43:31:101:0.426:2	./.	./.	./.	./.	0/1:52,39:31:91:0.429:2
chr11	123777502	rs61907183	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:30:12:0.417:2	./.	./.	./.	./.	./.	./.	./.	0/1:48,53:31:101:0.525:2
chr11	123777536	rs7926767	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,105:32:106:0.991:2	0/1:0,75:32:75:1.00:2	0/1:6,6:32:12:0.500:2	0/1:0,113:32:113:1.00:2	0/1:1,105:31:106:0.991:2	0/1:72,50:31:122:0.410:2	./.	0/1:73,62:32:135:0.459:2	0/1:77,43:33:120:0.358:2	./.	0/1:65,51:31:116:0.440:2
chr11	123777736	rs10790610	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,131:33:132:0.992:2	0/1:1,90:32:91:0.989:2	./.	0/1:74,75:32:149:0.503:2	0/1:57,61:32:118:0.517:2	0/1:68,64:32:132:0.485:2	./.	./.	./.	./.	0/1:72,83:34:155:0.535:2
chr11	123777861	rs61748875	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,10:32:12:0.833:2	0/1:64,59:33:123:0.480:2	0/1:73,43:32:116:0.371:2	./.	./.	0/1:98,76:33:174:0.437:2	0/1:76,79:33:155:0.510:2	./.	./.
chr11	123777986	rs7942047	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,101:32:101:1.00:2	0/1:1,49:31:50:0.980:2	0/1:0,4:30:4:1.00:2	0/1:0,57:32:57:1.00:2	0/1:1,66:31:67:0.985:2	0/1:54,29:32:83:0.349:2	./.	0/1:60,38:32:98:0.388:2	0/1:59,59:33:118:0.500:2	./.	0/1:0,110:32:110:1.00:2
chr11	123778031	rs7927385	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,74:32:74:1.00:2	0/1:0,33:32:33:1.00:2	./.	0/1:0,48:32:48:1.00:2	0/1:0,45:31:45:1.00:2	0/1:36,15:32:51:0.294:2	./.	0/1:32,26:31:58:0.448:2	0/1:47,47:32:94:0.500:2	./.	0/1:38,48:32:86:0.558:2
chr11	123810492	rs77776318	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,12:32:20:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	123813622	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:31:143:0.028:2
chr11	123813823	rs7129884	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,128:31:130:0.985:2	0/1:1,75:31:76:0.987:2	./.	0/1:76,76:31:152:0.500:2	0/1:95,77:31:172:0.448:2	0/1:76,75:30:151:0.497:2	./.	./.	./.	./.	0/1:84,66:31:150:0.440:2
chr11	123813940	rs7130003	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,77:33:78:0.987:2	0/1:1,41:33:42:0.976:2	./.	0/1:65,25:33:90:0.278:2	0/1:65,56:33:123:0.463:2	0/1:61,45:33:106:0.425:2	./.	./.	./.	./.	0/1:61,46:33:107:0.430:2
chr11	123814489	rs4936859	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,37:32:37:1.00:2	0/1:0,25:31:25:1.00:2	./.	0/1:30,16:33:46:0.348:2	0/1:12,16:33:28:0.571:2	0/1:34,28:32:62:0.452:2	./.	./.	./.	./.	0/1:19,22:33:41:0.537:2
chr11	123847831	rs138781398	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,36:32:109:0.330:2	./.	./.	./.	./.	./.
chr11	123848064	rs17759447	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,31:30:66:0.470:2	./.	./.	./.	./.	./.
chr11	123848121	rs17686210	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,30:33:61:0.492:2
chr11	123848212	rs17759513	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,22:32:54:0.407:2
chr11	123886307	rs79057843	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,35:30:35:1.00:2	0/1:58,99:30:157:0.631:2	0/1:33,75:29:108:0.694:2	0/1:42,93:30:135:0.689:2	0/1:113,84:31:197:0.426:2	0/1:103,83:31:186:0.446:2	0/1:98,92:31:190:0.484:2	0/1:2,179:31:181:0.989:2	./.
chr11	123886308	rs11219407	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:28:96:1.00:2	0/1:0,52:28:52:1.00:2	0/1:0,35:31:35:1.00:2	0/1:1,156:30:157:0.994:2	0/1:0,106:30:107:1.00:2	0/1:1,131:31:132:0.992:2	0/1:112,84:32:196:0.429:2	0/1:106,83:31:189:0.439:2	0/1:99,92:33:191:0.482:2	0/1:1,181:32:182:0.995:2	0/1:113,41:29:154:0.266:2
chr11	123886320	rs12224056	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,80:29:81:0.988:2	0/1:1,51:29:52:0.981:2	./.	0/1:132,45:30:177:0.254:2	0/1:111,30:30:141:0.213:2	0/1:123,32:30:155:0.206:2	./.	./.	./.	./.	0/1:127,36:30:163:0.221:2
chr11	123886352	rs547068	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,50:32:51:0.980:2	0/1:1,45:33:46:0.978:2	./.	0/1:156,20:32:176:0.114:2	0/1:155,16:34:171:0.094:2	0/1:158,16:33:174:0.092:2	./.	./.	./.	./.	0/1:137,20:33:157:0.127:2
chr11	123886363	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:184,5:33:189:0.026:2	./.	./.	./.	./.	./.	./.
chr11	123886546	rs199781271	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:111,83:31:194:0.428:2	0/1:120,75:30:195:0.385:2	./.	0/1:162,34:32:196:0.173:2	0/1:157,40:29:197:0.203:2	0/1:159,35:30:194:0.180:2	./.	./.	./.	./.	0/1:150,38:30:188:0.202:2
chr11	123886549	rs200481059	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:187,6:28:194:0.031:2	0/1:187,9:30:196:0.046:2	0/1:69,19:29:88:0.216:2	0/1:178,15:29:193:0.078:2	0/1:173,24:29:197:0.122:2	0/1:176,16:30:193:0.083:2	0/1:168,28:30:196:0.143:2	0/1:181,15:29:196:0.077:2	0/1:175,20:31:195:0.103:2	0/1:154,36:31:190:0.189:2	./.
chr11	123886550	rs140019860	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:105,85:30:190:0.447:2	0/1:119,77:31:196:0.393:2	./.	0/1:155,42:30:197:0.213:2	0/1:150,47:29:197:0.239:2	0/1:157,36:29:193:0.187:2	./.	./.	./.	./.	0/1:148,38:30:186:0.204:2
chr11	123886681	rs1893766	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,163:30:163:1.00:2	0/1:103,88:31:191:0.461:2	0/1:109,88:30:197:0.447:2	0/1:118,78:31:196:0.398:2	0/1:103,95:31:198:0.480:2	0/1:96,98:30:194:0.505:2	0/1:84,110:31:194:0.567:2	0/1:3,186:30:189:0.984:2	./.
chr11	123886717	rs503223	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:142,34:32:176:0.193:2	0/1:151,38:32:189:0.201:2	0/1:72,33:32:106:0.314:2	0/1:144,53:32:197:0.269:2	0/1:148,49:31:197:0.249:2	0/1:143,50:31:193:0.259:2	0/1:176,21:32:197:0.107:2	0/1:167,31:32:198:0.157:2	0/1:171,22:33:193:0.114:2	0/1:165,28:32:193:0.145:2	0/1:146,40:32:186:0.215:2
chr11	123886818	rs140418650	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:165,14:32:179:0.078:2	0/1:183,8:31:191:0.042:2	./.	0/1:185,11:32:196:0.056:2	0/1:189,5:29:194:0.026:2	./.	./.	./.	./.	./.	./.
chr11	123886865	rs4084209	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,178:32:181:0.989:2	0/1:0,184:32:184:1.00:2	0/1:0,49:32:49:1.00:2	0/1:2,180:33:182:0.989:2	0/1:7,190:32:197:0.964:2	0/1:0,191:32:191:1.00:2	0/1:107,89:33:196:0.454:2	0/1:108,87:32:196:0.446:2	0/1:114,74:33:188:0.394:2	0/1:1,177:32:178:0.994:2	0/1:90,106:32:196:0.541:2
chr11	123886890	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:32:195:0.021:2	./.
chr11	123886902	rs144455396	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,84:30:191:0.440:2	./.	./.	./.	./.	./.	./.	./.
chr11	123886984	rs4936880	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,38:29:38:1.00:2	0/1:102,90:30:192:0.469:2	0/1:121,72:30:193:0.373:2	0/1:92,90:29:182:0.495:2	0/1:104,87:30:191:0.455:2	0/1:111,83:29:194:0.428:2	0/1:97,99:31:196:0.505:2	0/1:0,163:30:163:1.00:2	./.
chr11	123887164	rs4936881	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,16:32:17:0.941:2	0/1:61,52:32:113:0.460:2	0/1:65,45:32:110:0.409:2	0/1:65,59:32:124:0.476:2	0/1:54,49:32:103:0.476:2	0/1:62,51:32:113:0.451:2	0/1:63,55:33:118:0.466:2	0/1:4,83:32:87:0.954:2	./.
chr11	123887175	rs61908597	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,53:31:95:0.558:2
chr11	123887184	rs4936882	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,60:32:61:0.984:2	0/1:0,52:32:52:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,78:33:78:1.00:2	0/1:2,68:31:70:0.971:2	0/1:0,79:31:79:1.00:2	0/1:37,39:33:76:0.513:2	0/1:48,42:32:90:0.467:2	0/1:48,40:33:88:0.455:2	0/1:0,52:33:52:1.00:2	0/1:48,32:33:80:0.400:2
chr11	123893728	rs200621698	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:120,30:30:150:0.200:2	0/1:84,20:31:104:0.192:2	./.	0/1:150,17:31:167:0.102:2	0/1:112,11:29:123:0.089:2	0/1:171,8:28:180:0.045:2	./.	./.	./.	./.	0/1:141,15:29:156:0.096:2
chr11	123893729	rs634361	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:120,30:27:150:0.200:2	0/1:81,21:26:102:0.206:2	./.	0/1:152,17:26:169:0.101:2	0/1:112,11:28:123:0.089:2	0/1:171,8:25:180:0.045:2	./.	./.	./.	./.	0/1:139,16:27:156:0.103:2
chr11	123893791	rs3017765	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:136,48:32:184:0.261:2	0/1:123,34:32:157:0.217:2	./.	0/1:170,17:34:187:0.091:2	0/1:182,12:33:194:0.062:2	0/1:183,12:31:195:0.062:2	./.	./.	./.	./.	0/1:155,37:33:192:0.193:2
chr11	123893801	rs74791330	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:29,16:32:45:0.356:2	0/1:160,32:31:192:0.167:2	0/1:165,32:31:197:0.162:2	0/1:173,23:31:196:0.117:2	0/1:174,23:32:197:0.117:2	0/1:161,30:31:192:0.157:2	0/1:169,26:33:195:0.133:2	0/1:136,55:32:191:0.288:2	./.
chr11	123893984	rs148015773	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:106,75:30:181:0.414:2	0/1:114,79:29:193:0.409:2	./.	0/1:159,26:31:185:0.141:2	0/1:158,38:29:196:0.194:2	0/1:158,34:31:192:0.177:2	./.	./.	./.	./.	0/1:146,43:29:189:0.228:2
chr11	123893987	rs142337884	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:182,7:28:189:0.037:2	0/1:181,11:29:192:0.057:2	0/1:49,17:28:66:0.258:2	0/1:145,34:29:179:0.190:2	0/1:166,25:28:191:0.131:2	0/1:165,28:30:193:0.145:2	0/1:181,17:29:198:0.086:2	0/1:172,19:29:193:0.099:2	0/1:174,18:31:192:0.094:2	0/1:147,45:29:193:0.234:2	./.
chr11	123893988	rs145930558	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:103,78:30:183:0.431:2	0/1:112,81:30:193:0.420:2	./.	0/1:158,31:29:189:0.164:2	0/1:158,38:29:197:0.194:2	0/1:153,40:29:193:0.207:2	./.	./.	./.	./.	0/1:137,43:30:180:0.239:2
chr11	123894117	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:187,7:30:194:0.036:2	./.	./.	./.	./.	./.	./.
chr11	123894119	rs12366219	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,68:30:69:0.986:2	0/1:98,96:30:194:0.495:2	0/1:106,84:29:190:0.442:2	0/1:103,93:30:196:0.474:2	0/1:137,60:30:197:0.305:2	0/1:125,71:30:196:0.362:2	0/1:138,59:31:197:0.299:2	0/1:2,183:30:185:0.989:2	./.
chr11	123894126	rs17128190	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2	./.	./.	./.	./.	./.	./.
chr11	123894136	rs28499345	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,160:31:162:0.994:2	0/1:2,135:31:137:0.985:2	0/1:1,50:31:51:0.980:2	0/1:1,163:32:164:0.994:2	0/1:1,157:31:158:0.994:2	0/1:0,157:32:158:1.00:2	0/1:137,55:31:192:0.286:2	0/1:127,64:32:191:0.335:2	0/1:130,59:32:190:0.312:2	0/1:0,156:32:156:1.00:2	0/1:3,153:32:156:0.981:2
chr11	123894234	rs11219413	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,179:29:183:0.978:2	0/1:0,171:29:171:1.00:2	./.	0/1:111,82:30:193:0.425:2	0/1:102,92:29:194:0.474:2	0/1:93,104:29:197:0.528:2	./.	./.	./.	./.	0/1:103,89:29:192:0.464:2
chr11	123894339	rs12363627	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,94:32:189:0.497:2	./.
chr11	123894402	rs12221656	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,154:30:156:0.987:2	0/1:2,123:30:126:0.984:2	./.	0/1:81,80:30:161:0.497:2	0/1:78,78:30:156:0.500:2	0/1:80,63:29:143:0.441:2	./.	./.	./.	./.	0/1:86,72:30:158:0.456:2
chr11	123894553	rs61908612	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,64:30:145:0.441:2
chr11	123894556	rs12574086	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:124,6:30:130:0.046:2	./.	./.	./.	./.	./.	0/1:71,69:31:140:0.493:2
chr11	123900367	rs200209804	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:135,6:30:141:0.043:2	0/1:183,7:25:190:0.037:2	0/1:164,6:29:170:0.035:2	./.	./.	./.	./.
chr11	123900388	rs141086209	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:185,8:31:193:0.041:2	0/1:187,4:32:193:0.021:2	0/1:188,10:28:198:0.051:2	0/1:181,7:33:188:0.037:2	./.	./.	./.
chr11	123900401	rs28485314	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:178,5:32:183:0.027:2	0/1:187,7:31:194:0.036:2	0/1:180,5:31:185:0.027:2	0/1:189,10:30:199:0.050:2	0/1:185,7:32:192:0.036:2	0/1:191,5:32:196:0.026:2	0/1:184,5:30:189:0.026:2	./.
chr11	123900495	rs143756909	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:32:195:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	123900524	rs140497683	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:32:194:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	123900564	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	123900965	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,6:34:183:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	123901027	rs148074790	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:161,10:32:171:0.058:2	./.	./.	0/1:184,4:32:188:0.021:2	./.	./.	0/1:145,4:33:149:0.027:2	0/1:155,8:32:163:0.049:2	./.	./.	0/1:173,4:33:177:0.023:2
chr11	123901165	rs187776113	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,16:32:140:0.115:2	./.
chr11	123909008	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:186,6:27:192:0.031:2	0/1:108,5:29:113:0.044:2	./.	./.	0/1:180,4:32:184:0.022:2	./.	./.	./.	./.	./.	0/1:187,7:27:194:0.036:2
chr11	123909011	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,6:28:193:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	123909016	rs180880238	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:188,5:31:193:0.026:2	0/1:104,5:32:109:0.046:2	./.	0/1:192,5:27:197:0.025:2	./.	./.	./.	./.	./.	./.	0/1:187,6:30:193:0.031:2
chr11	123909073	rs11219419	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,170:33:178:0.966:2	0/1:3,129:33:132:0.977:2	./.	0/1:96,86:33:182:0.473:2	0/1:119,71:33:191:0.374:2	0/1:110,78:33:188:0.415:2	./.	./.	./.	./.	0/1:116,62:32:178:0.348:2
chr11	123909106	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:183,4:33:187:0.021:2	./.	./.	./.	./.	./.	./.
chr11	123909108	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.	./.	./.	./.	./.
chr11	123909172	rs28414940	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,138:31:181:0.762:2	0/1:34,135:32:169:0.799:2	./.	0/1:131,61:32:192:0.318:2	0/1:131,60:31:191:0.314:2	0/1:127,65:31:192:0.339:2	./.	./.	./.	./.	0/1:110,70:32:180:0.389:2
chr11	123909342	rs470242	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,183:33:186:0.984:2	0/1:4,163:32:167:0.976:2	0/1:95,5:30:100:0.050:2	0/1:121,67:32:188:0.356:2	0/1:107,89:31:196:0.454:2	0/1:121,74:32:195:0.379:2	0/1:190,6:31:196:0.031:2	0/1:186,9:32:195:0.046:2	./.	0/1:188,6:31:194:0.031:2	0/1:109,76:32:186:0.411:2
chr11	123909441	rs470208	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	123909627	rs11219420	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,6:32:13:0.462:2	0/1:125,31:32:156:0.199:2	0/1:109,26:31:135:0.193:2	0/1:118,30:32:148:0.203:2	0/1:121,32:30:153:0.209:2	0/1:137,37:32:174:0.213:2	0/1:121,29:32:150:0.193:2	0/1:38,58:32:96:0.604:2	./.
chr11	123909637	rs4936889	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,8:30:10:0.800:2	0/1:113,39:29:153:0.257:2	0/1:100,27:29:127:0.213:2	0/1:93,37:30:130:0.285:2	0/1:119,29:31:149:0.196:2	0/1:130,38:30:169:0.226:2	0/1:96,36:30:132:0.273:2	0/1:6,74:30:81:0.925:2	./.
chr11	123909650	rs3894199	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:58,47:28:105:0.448:2	0/1:42,34:30:76:0.447:2	./.	0/1:84,30:29:114:0.263:2	0/1:74,29:30:103:0.282:2	0/1:78,29:31:107:0.271:2	./.	./.	./.	./.	0/1:98,22:29:120:0.183:2
chr11	123909653	rs4998340	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:60,44:30:104:0.423:2	0/1:40,32:31:72:0.444:2	./.	0/1:83,30:31:113:0.265:2	0/1:73,29:30:102:0.284:2	0/1:79,28:31:107:0.262:2	./.	./.	./.	./.	0/1:93,21:31:114:0.184:2
chr11	123909656	rs3894198	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:58,44:30:103:0.431:2	0/1:39,32:31:71:0.451:2	./.	0/1:81,30:30:111:0.270:2	0/1:70,30:29:100:0.300:2	0/1:77,28:30:105:0.267:2	./.	./.	./.	./.	0/1:82,21:29:103:0.204:2
chr11	123909690	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,7:25:63:0.111:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	123909691	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,7:29:62:0.115:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	123909695	rs3894197	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,69:32:69:1.00:2	0/1:67,27:33:94:0.287:2	0/1:68,51:32:119:0.429:2	0/1:59,56:33:115:0.487:2	0/1:0,97:33:97:1.00:2	0/1:59,23:34:82:0.280:2
chr11	124006972	rs2276054	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,22:32:63:0.349:2	./.	./.	./.	./.
chr11	124006993	rs2276053	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,16:31:49:0.327:2	./.	./.	./.	./.
chr11	124007890	rs34188444	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,22:33:63:0.349:2	./.	./.
chr11	124015994	rs1056615	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,36:31:57:0.632:2	0/1:24,20:31:44:0.455:2	./.	0/1:42,35:30:77:0.455:2	0/1:0,82:30:82:1.00:2	./.	0/1:0,89:30:89:1.00:2	0/1:0,77:31:77:1.00:2	0/1:51,30:31:81:0.370:2	./.	0/1:39,33:31:72:0.458:2
chr11	124016058	rs117689747	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,20:32:62:0.323:2	./.	./.
chr11	124095414	rs10893172	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:28,23:33:51:0.451:2	0/1:21,13:33:34:0.382:2	0/1:0,3:32:3:1.00:2	./.	./.	0/1:36,32:33:68:0.471:2	./.	./.	0/1:36,39:34:75:0.520:2	0/1:22,29:33:51:0.569:2	0/1:42,27:33:69:0.391:2
chr11	124095525	rs11219508	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:60,55:31:115:0.478:2	0/1:39,51:29:90:0.567:2	0/1:0,10:30:10:1.00:2	./.	./.	0/1:65,55:31:120:0.458:2	./.	./.	0/1:67,85:31:152:0.559:2	0/1:69,49:31:118:0.415:2	0/1:51,44:31:95:0.463:2
chr11	124095647	rs2466615	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,76:33:178:0.429:2	0/1:52,62:32:114:0.544:2	0/1:0,28:33:28:1.00:2	0/1:188,9:31:197:0.046:2	./.	0/1:3,181:32:184:0.984:2	0/1:108,77:33:185:0.416:2	./.	0/1:100,90:34:190:0.474:2	0/1:89,102:33:191:0.534:2	0/1:93,93:33:186:0.500:2
chr11	124095739	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:33:195:0.026:2	./.	./.	./.	./.
chr11	124095752	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:30:194:0.026:2	./.	./.	./.	./.
chr11	124095884	rs2466614	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,72:30:166:0.434:2	0/1:86,57:29:143:0.399:2	./.	./.	./.	./.
chr11	124096099	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,7:30:193:0.036:2	./.	./.	./.
chr11	124096116	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,6:31:188:0.032:2	./.	./.	./.
chr11	124096122	rs7946182	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:105,52:29:157:0.331:2	0/1:62,33:30:95:0.347:2	0/1:0,9:30:9:1.00:2	./.	./.	0/1:102,67:29:170:0.396:2	./.	./.	0/1:95,59:30:154:0.383:2	0/1:102,62:31:164:0.378:2	0/1:99,64:30:164:0.393:2
chr11	124096159	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:32:191:0.021:2	./.	./.	./.
chr11	124096195	rs7946214	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:119,39:32:158:0.247:2	0/1:57,27:31:84:0.321:2	0/1:1,14:30:15:0.933:2	./.	./.	0/1:98,54:31:152:0.355:2	./.	./.	0/1:132,44:33:176:0.250:2	0/1:109,46:30:155:0.297:2	0/1:123,65:30:188:0.346:2
chr11	124096247	rs2466613	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:105,65:33:171:0.382:2	0/1:57,42:32:99:0.424:2	0/1:1,22:32:23:0.957:2	./.	0/1:157,4:32:161:0.025:2	0/1:5,136:31:142:0.965:2	0/1:115,46:31:161:0.286:2	./.	0/1:125,59:33:184:0.321:2	0/1:113,75:32:188:0.399:2	0/1:95,95:32:190:0.500:2
chr11	124096275	rs2512268	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,41:32:133:0.308:2	0/1:93,32:32:125:0.256:2	./.	./.	./.	./.
chr11	124096277	rs2466612	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,40:29:132:0.303:2	0/1:91,32:30:123:0.260:2	./.	./.	./.	./.
chr11	124120593	.	C	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:140,5:31:145:0.034:2	./.	./.	0/1:164,22:31:186:0.118:2	0/1:140,9:30:149:0.060:2	0/1:175,13:31:188:0.069:2	0/1:155,20:32:175:0.114:2	0/1:180,18:32:198:0.091:2	./.	./.	0/1:156,5:31:161:0.031:2
chr11	124120821	rs12099154	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:101,88:29:189:0.466:2	0/1:102,83:29:186:0.449:2	0/1:0,44:30:44:1.00:2	./.	./.	0/1:104,82:29:186:0.441:2	./.	./.	0/1:111,79:30:190:0.416:2	0/1:109,86:29:195:0.441:2	0/1:100,93:29:193:0.482:2
chr11	124121199	rs4268525	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:64,63:32:127:0.496:2	0/1:41,33:31:74:0.446:2	./.	0/1:2,126:33:128:0.984:2	0/1:2,81:31:83:0.976:2	0/1:86,52:32:138:0.377:2	0/1:2,82:32:84:0.976:2	0/1:3,132:32:135:0.978:2	./.	0/1:67,60:32:127:0.472:2	0/1:83,86:33:169:0.509:2
chr11	124134743	rs2466637	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,23:32:45:0.511:2	0/1:9,10:32:19:0.526:2	./.	0/1:0,35:30:35:1.00:2	0/1:0,18:31:18:1.00:2	0/1:26,19:31:45:0.422:2	0/1:0,23:32:23:1.00:2	0/1:1,31:32:32:0.969:2	./.	0/1:18,10:31:28:0.357:2	0/1:24,24:31:48:0.500:2
chr11	124135009	rs2512168	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:97,72:29:170:0.426:2	0/1:52,48:31:100:0.480:2	./.	0/1:1,150:30:152:0.993:2	0/1:1,109:29:110:0.991:2	0/1:96,49:30:145:0.338:2	0/1:2,136:30:138:0.986:2	0/1:4,128:30:132:0.970:2	./.	0/1:119,59:31:178:0.331:2	0/1:94,50:30:144:0.347:2
chr11	124135152	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.
chr11	124135438	rs2512167	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:97,75:31:172:0.436:2	0/1:59,44:31:103:0.427:2	./.	0/1:4,144:31:148:0.973:2	0/1:0,91:30:92:1.00:2	0/1:80,50:31:130:0.385:2	0/1:2,101:31:103:0.981:2	0/1:2,116:31:118:0.983:2	./.	0/1:67,48:31:115:0.417:2	0/1:88,80:31:168:0.476:2
chr11	124135481	rs2466701	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:93,56:30:149:0.376:2	0/1:48,45:31:93:0.484:2	./.	0/1:4,125:30:129:0.969:2	0/1:3,107:30:110:0.973:2	0/1:104,58:29:162:0.358:2	0/1:2,102:30:104:0.981:2	0/1:1,130:30:131:0.992:2	./.	0/1:55,38:31:93:0.409:2	0/1:87,74:31:161:0.460:2
chr11	124135516	rs141463061	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,5:29:170:0.029:2	./.	./.	./.	./.	./.
chr11	124135619	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,8:30:194:0.041:2	0/1:185,7:31:192:0.036:2	./.	./.	./.	./.
chr11	124135662	rs2512166	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,74:33:174:0.425:2	0/1:80,104:33:184:0.565:2	./.	./.	./.	./.
chr11	124179835	rs4936918	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:62,64:31:126:0.508:2	0/1:38,26:30:64:0.406:2	./.	0/1:0,102:30:102:1.00:2	0/1:0,58:29:58:1.00:2	./.	0/1:42,34:31:76:0.447:2	0/1:0,106:30:106:1.00:2	./.	0/1:62,47:31:109:0.431:2	0/1:81,40:31:121:0.331:2
chr11	124180082	rs4936919	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,39:33:67:0.582:2	0/1:19,18:32:37:0.486:2	./.	0/1:5,85:33:90:0.944:2	0/1:4,44:33:48:0.917:2	./.	0/1:41,31:31:72:0.431:2	0/1:0,74:32:75:1.00:2	./.	0/1:40,33:32:73:0.452:2	0/1:57,38:32:95:0.400:2
chr11	124180282	rs7107539	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,17:32:33:0.515:2	0/1:15,6:32:21:0.286:2	./.	0/1:0,41:33:41:1.00:2	0/1:0,46:32:46:1.00:2	./.	0/1:34,27:32:61:0.443:2	0/1:2,51:32:53:0.962:2	./.	0/1:29,16:32:45:0.356:2	0/1:42,17:31:59:0.288:2
chr11	124180477	rs6590057	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:32,26:31:58:0.448:2	0/1:16,8:32:24:0.333:2	./.	./.	./.	./.	0/1:44,21:32:65:0.323:2	0/1:41,34:31:75:0.453:2	./.	./.	./.
chr11	124189219	rs150761485	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,41:28:91:0.451:2	./.
chr11	124189306	rs2466620	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,60:33:115:0.522:2	./.	./.
chr11	124189729	rs2512219	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,15:33:29:0.517:2	./.	./.
chr11	124252313	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:32:107:0.037:2	./.	./.	./.
chr11	124252417	rs139038842	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,66:32:151:0.437:2	./.	./.	./.
chr11	124252422	rs503220	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:65,49:33:114:0.430:2	0/1:45,26:32:71:0.366:2	0/1:11,6:32:17:0.353:2	./.	./.	0/1:82,27:32:109:0.248:2	./.	./.	0/1:82,56:33:138:0.406:2	0/1:45,44:32:89:0.494:2	0/1:77,59:32:136:0.434:2
chr11	124252617	rs470202	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	124252718	rs886201	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:128,63:31:191:0.330:2	0/1:120,48:31:168:0.286:2	0/1:54,12:30:66:0.182:2	./.	./.	0/1:145,47:30:192:0.245:2	./.	./.	0/1:141,48:30:189:0.254:2	0/1:154,34:30:188:0.181:2	0/1:146,41:31:187:0.219:2
chr11	124252750	rs886202	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:136,46:31:183:0.253:2	0/1:140,48:31:188:0.255:2	0/1:54,11:30:65:0.169:2	./.	./.	0/1:153,31:31:184:0.168:2	./.	./.	0/1:142,45:31:188:0.241:2	0/1:157,35:31:192:0.182:2	0/1:141,49:31:190:0.258:2
chr11	124252892	rs644147	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:124,51:33:175:0.291:2	0/1:80,41:32:121:0.339:2	0/1:25,10:33:35:0.286:2	./.	./.	0/1:105,54:32:159:0.340:2	./.	./.	0/1:122,58:34:180:0.322:2	0/1:100,52:33:152:0.342:2	0/1:117,55:33:172:0.320:2
chr11	124252904	rs3017589	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:34:153:0.026:2	./.
chr11	124253003	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,63:32:153:0.412:2	0/1:62,48:32:110:0.436:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	124253100	rs71491826	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:106,20:32:126:0.159:2	0/1:76,19:32:95:0.200:2	0/1:13,3:32:16:0.188:2	./.	./.	0/1:148,21:31:169:0.124:2	./.	./.	0/1:134,31:32:165:0.188:2	0/1:81,21:30:102:0.206:2	0/1:114,37:31:151:0.245:2
chr11	124253140	rs61911135	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:145,9:32:154:0.058:2	0/1:96,8:32:104:0.077:2	0/1:21,4:31:25:0.160:2	0/1:174,23:32:197:0.117:2	0/1:100,20:32:120:0.167:2	./.	0/1:121,12:31:133:0.090:2	0/1:173,21:31:194:0.108:2	0/1:161,9:31:170:0.053:2	0/1:143,14:32:157:0.089:2	0/1:151,11:33:162:0.068:2
chr11	124253147	rs530704	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:133,22:33:155:0.142:2	0/1:93,8:33:101:0.079:2	./.	./.	./.	0/1:138,21:31:159:0.132:2	./.	./.	0/1:145,14:32:159:0.088:2	0/1:153,12:33:165:0.073:2	0/1:145,11:32:156:0.071:2
chr11	124253161	rs530740	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:140,12:32:152:0.079:2	0/1:99,4:33:103:0.039:2	0/1:26,3:32:29:0.103:2	./.	./.	0/1:139,15:32:154:0.097:2	./.	./.	0/1:149,9:30:158:0.057:2	0/1:149,15:31:164:0.091:2	0/1:147,13:33:160:0.081:2
chr11	124253170	rs530765	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:137,9:34:146:0.062:2	./.	0/1:27,5:32:32:0.156:2	./.	./.	0/1:133,9:31:142:0.063:2	./.	./.	0/1:149,7:31:156:0.045:2	0/1:141,15:33:156:0.096:2	0/1:144,11:32:155:0.071:2
chr11	124253181	rs28373946	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,76:29:139:0.547:2	0/1:41,67:28:108:0.620:2	0/1:16,15:30:31:0.484:2	0/1:144,46:29:190:0.242:2	0/1:92,32:29:124:0.258:2	0/1:89,45:28:134:0.336:2	0/1:110,17:29:127:0.134:2	0/1:130,43:29:173:0.249:2	0/1:61,78:29:139:0.561:2	0/1:68,74:29:142:0.521:2	0/1:72,81:29:153:0.529:2
chr11	124266425	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,6:32:146:0.041:2	./.	./.	./.
chr11	124266430	rs112908778	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:148,5:30:153:0.033:2	0/1:77,4:33:81:0.049:2	./.	./.	./.	./.	./.	./.	0/1:148,4:32:152:0.026:2	0/1:111,4:32:115:0.035:2	0/1:147,12:32:159:0.075:2
chr11	124266726	rs199646713	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:166,29:31:195:0.149:2	0/1:169,22:31:191:0.115:2	0/1:47,9:31:56:0.161:2	./.	./.	0/1:163,26:29:189:0.138:2	./.	./.	0/1:162,31:31:193:0.161:2	0/1:172,26:30:198:0.131:2	0/1:162,31:31:193:0.161:2
chr11	124266758	rs112614178	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:153,33:32:186:0.177:2	0/1:160,34:32:194:0.175:2	0/1:47,9:31:56:0.161:2	./.	./.	0/1:158,30:31:188:0.160:2	./.	./.	0/1:155,35:32:190:0.184:2	0/1:153,39:31:192:0.203:2	0/1:153,39:32:192:0.203:2
chr11	124266906	rs530992	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:105,74:31:179:0.413:2	0/1:90,62:31:154:0.408:2	0/1:17,14:29:31:0.452:2	./.	./.	0/1:111,81:30:192:0.422:2	./.	0/1:171,7:29:179:0.039:2	0/1:105,71:31:176:0.403:2	0/1:109,59:31:168:0.351:2	0/1:106,83:31:189:0.439:2
chr11	124266912	rs28398895	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,161:33:180:0.894:2	0/1:18,122:32:140:0.871:2	0/1:6,21:32:27:0.778:2	0/1:0,172:33:172:1.00:2	0/1:2,170:32:172:0.988:2	0/1:109,80:32:189:0.423:2	0/1:92,91:33:183:0.497:2	0/1:2,152:32:154:0.987:2	0/1:40,129:33:169:0.763:2	0/1:19,142:33:161:0.882:2	0/1:27,160:33:187:0.856:2
chr11	124266927	rs142812088	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:157,9:30:166:0.054:2	0/1:115,9:32:124:0.073:2	./.	./.	./.	0/1:157,9:31:166:0.054:2	./.	./.	0/1:114,10:32:124:0.081:2	0/1:138,12:32:150:0.080:2	0/1:174,8:34:182:0.044:2
chr11	124267148	rs77374761	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,15:32:84:0.179:2	0/1:34,5:31:39:0.128:2	./.	./.	./.	0/1:96,12:31:108:0.111:2	./.	./.	0/1:67,22:31:89:0.247:2	0/1:51,10:32:61:0.164:2	0/1:88,4:32:92:0.043:2
chr11	124267177	rs61910862	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:29:48:1.00:2	0/1:0,19:29:19:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,80:29:80:1.00:2	0/1:0,45:27:45:1.00:2	./.	0/1:96,26:30:122:0.213:2	0/1:0,68:27:68:1.00:2	0/1:0,58:29:58:1.00:2	0/1:0,37:28:37:1.00:2	0/1:2,64:28:66:0.970:2
chr11	124267189	rs507335	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,48:29:49:0.980:2	0/1:0,17:28:17:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,77:29:77:1.00:2	0/1:3,37:27:40:0.925:2	./.	0/1:90,21:30:111:0.189:2	0/1:2,55:28:57:0.965:2	0/1:2,51:29:53:0.962:2	0/1:0,33:28:33:1.00:2	0/1:2,61:28:64:0.968:2
chr11	124294236	rs4057749	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,74:30:119:0.622:2	./.	./.
chr11	124294377	rs4057750	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,49:33:97:0.505:2	./.	./.
chr11	124294703	rs10750270	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,15:32:37:0.405:2	0/1:8,11:30:19:0.579:2	./.	0/1:2,28:31:30:0.933:2	0/1:10,14:32:24:0.583:2	0/1:10,14:32:24:0.583:2	0/1:0,18:32:18:1.00:2	0/1:0,22:32:22:1.00:2	./.	0/1:13,14:33:27:0.519:2	./.
chr11	124310622	rs4296049	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,39:29:41:0.951:2	0/1:2,25:29:27:0.926:2	0/1:3,3:30:6:0.500:2	0/1:22,19:29:41:0.463:2	./.	0/1:19,24:30:43:0.558:2	0/1:4,31:29:35:0.886:2	0/1:2,20:29:22:0.909:2	0/1:20,24:30:44:0.545:2	0/1:21,22:30:43:0.512:2	./.
chr11	124412655	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:33:42:0.095:2	./.	./.
chr11	124412838	rs61747005	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,12:32:32:0.375:2	0/1:13,16:31:29:0.552:2	./.
chr11	124440362	rs55861866	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:88,62:32:150:0.413:2	0/1:71,39:33:110:0.355:2	./.	0/1:115,84:33:199:0.422:2	0/1:119,78:32:197:0.396:2	0/1:101,93:32:194:0.479:2	./.	0/1:101,94:33:195:0.482:2	./.	./.	0/1:98,66:33:164:0.402:2
chr11	124440617	rs12792184	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,125:33:125:1.00:2	0/1:0,97:32:97:1.00:2	./.	0/1:2,176:32:178:0.989:2	0/1:127,58:31:185:0.314:2	0/1:3,172:31:175:0.983:2	0/1:0,189:32:189:1.00:2	0/1:0,183:32:183:1.00:2	0/1:1,184:33:185:0.995:2	./.	0/1:88,84:32:172:0.488:2
chr11	124481494	rs35027803	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,47:28:125:0.376:2	./.	0/1:37,37:30:74:0.500:2	./.
chr11	124489279	rs181086014	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,17:30:28:0.607:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	124506967	rs7941327	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,112:31:115:0.974:2	0/1:81,67:31:148:0.453:2	./.	./.	./.	./.	./.	./.
chr11	124524627	rs1942663	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,52:30:52:1.00:2	0/1:51,39:31:90:0.433:2	./.	./.	./.	./.	./.	./.
chr11	124545191	rs149627407	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,35:32:35:1.00:2	0/1:13,12:32:25:0.480:2	./.	./.	./.	./.	./.	./.
chr11	124618346	rs111738856	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,14:32:32:0.438:2	0/1:12,7:32:19:0.368:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	124624150	rs12792040	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,32:28:35:0.941:2	0/1:22,15:31:37:0.405:2	./.	./.	./.	./.	./.	./.
chr11	124742365	rs3862618	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:40,40:32:80:0.500:2	0/1:15,25:32:41:0.625:2	0/1:7,4:31:11:0.364:2	./.	./.	./.	./.	./.	0/1:52,44:31:96:0.458:2	0/1:52,39:32:91:0.429:2	./.
chr11	124742385	rs4935898	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,53:31:137:0.387:2	./.	./.	./.	./.	./.	./.
chr11	124744005	rs77513537	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,46:30:78:0.590:2	0/1:49,31:31:80:0.388:2
chr11	124745503	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,4:24:22:0.182:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	124747837	rs7933204	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,31:33:31:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,2:32:2:1.00:2	./.	0/1:13,3:30:16:0.188:2	0/1:13,11:32:24:0.458:2	0/1:0,20:32:20:1.00:2	./.	0/1:0,26:33:26:1.00:2	0/1:0,28:32:28:1.00:2	0/1:1,45:32:46:0.978:2
chr11	124751095	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,4:31:64:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr11	124756406	rs7104934	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:31:8:0.375:2	./.	./.	./.	./.	./.	./.	0/1:35,24:29:59:0.407:2	0/1:27,28:30:55:0.509:2
chr11	124756683	rs149560585	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,3:34:28:0.107:2	./.
chr11	124763647	rs7927528	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,11:33:17:0.647:2	./.	./.	./.	./.	./.	./.	0/1:45,48:32:93:0.516:2	0/1:71,36:32:107:0.336:2
chr11	124765734	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:31:80:0.050:2	./.	./.	./.
chr11	124766128	rs4078313	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:41,34:33:75:0.453:2	0/1:7,25:32:32:0.781:2	0/1:0,9:33:9:1.00:2	./.	./.	./.	./.	./.	0/1:59,28:33:87:0.322:2	0/1:0,76:32:76:1.00:2	0/1:48,38:32:86:0.442:2
chr11	124766203	rs12226461	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:35,39:30:74:0.527:2	0/1:14,21:30:35:0.600:2	0/1:3,12:32:15:0.800:2	./.	./.	./.	./.	./.	0/1:52,40:31:92:0.435:2	./.	./.
chr11	124767067	rs59648931	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:36,22:29:58:0.379:2	0/1:33,13:29:46:0.283:2	0/1:0,10:29:10:1.00:2	./.	./.	./.	./.	./.	0/1:26,24:27:50:0.480:2	0/1:30,24:28:54:0.444:2	./.
chr11	124767125	rs73016370	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,7:32:14:0.500:2	./.
chr11	124767686	rs55941905	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:53,38:32:91:0.418:2	0/1:28,29:32:57:0.509:2	0/1:7,6:32:13:0.462:2	./.	./.	./.	./.	./.	0/1:63,44:31:107:0.411:2	./.	./.
chr11	124789755	rs3802904	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:30:90:1.00:2	0/1:0,46:29:46:1.00:2	0/1:1,15:29:16:0.938:2	0/1:67,56:30:124:0.455:2	./.	0/1:53,44:30:97:0.454:2	0/1:0,86:30:86:1.00:2	./.	0/1:0,102:29:102:1.00:2	0/1:0,86:30:86:1.00:2	0/1:2,102:30:105:0.981:2
chr11	124789828	rs78859654	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,79:31:86:0.919:2	0/1:0,70:32:70:1.00:2	./.	./.	./.	0/1:53,47:32:100:0.470:2	./.	./.	./.	./.	0/1:62,51:32:113:0.451:2
chr11	124792627	rs11826299	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,8:30:25:0.320:2	./.	./.	./.	./.	./.	./.	./.	0/1:92,98:29:190:0.516:2
chr11	124793682	rs10790715	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:31:33:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,18:30:18:1.00:2	0/1:41,35:30:76:0.461:2	./.	0/1:34,40:30:74:0.541:2	0/1:0,89:30:89:1.00:2	./.	0/1:0,58:31:58:1.00:2	0/1:0,66:30:66:1.00:2	0/1:40,38:28:78:0.487:2
chr11	124793716	rs10790716	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,47:32:47:1.00:2	0/1:0,18:32:18:1.00:2	./.	./.	./.	0/1:36,38:31:74:0.514:2	0/1:52,47:31:99:0.475:2	./.	0/1:39,38:31:77:0.494:2	./.	./.
chr11	124794688	rs112686308	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,70:32:136:0.515:2	0/1:48,47:32:95:0.495:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	124794712	rs74570840	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,62:30:129:0.481:2	./.	./.	./.	./.	./.	./.
chr11	124794880	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,43:30:92:0.467:2	./.
chr11	124857562	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,4:31:27:0.148:2	./.	./.	./.	./.
chr11	124857595	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,3:32:28:0.107:2	./.	./.	./.	./.
chr11	124857596	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,3:32:27:0.111:2	./.	./.	./.	./.
chr11	124857708	rs4936966	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,15:30:36:0.417:2	./.	0/1:1,14:32:15:0.933:2	./.	./.	0/1:23,25:31:48:0.521:2
chr11	124857811	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:34:64:0.063:2	./.	./.	./.
chr11	124861377	rs61752520	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:29:5:1.00:2	./.	./.	./.	./.	./.	./.	0/1:25,23:28:48:0.479:2	./.
chr11	124862514	rs6590113	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,11:32:22:0.500:2	./.	0/1:0,52:33:52:1.00:2	./.	./.	0/1:28,18:32:46:0.391:2
chr11	124863136	rs7951202	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:31:7:0.857:2	./.	./.	0/1:14,11:30:25:0.440:2	./.	0/1:2,31:31:35:0.939:2	./.	./.	0/1:17,20:32:37:0.541:2
chr11	124908352	rs7107487	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,29:30:67:0.433:2	./.	0/1:0,47:29:47:1.00:2	./.	./.	./.
chr11	124947149	rs12276567	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:38,40:32:78:0.513:2	0/1:14,24:33:38:0.632:2	0/1:3,6:30:9:0.667:2	./.	./.	0/1:48,52:32:100:0.520:2	./.	0/1:61,45:32:106:0.425:2	./.	0/1:0,98:32:98:1.00:2	0/1:47,45:33:92:0.489:2
chr11	124947396	rs55752830	A	G,T	.	PASS	AC=7,1;AF=0.292,0.042;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	0/1:30:77:0.382:2	0/1:31:64:0.422:2	0/1:29:14:0.500:2	./.	./.	0/1:30:121:0.479:2	0/2:32:148:0.408:2	0/1:29:109:0.459:2	./.	0/1:30:87:0.989:2	0/1:30:109:0.450:2
chr11	124949044	rs33932952	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,45:30:114:0.395:2	./.	./.	./.
chr11	124949665	rs55889403	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,9:32:21:0.429:2	./.	./.	./.	./.	0/1:79,49:32:128:0.383:2	./.	./.	./.
chr11	124951311	rs75801851	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,14:32:30:0.467:2	0/1:6,9:31:15:0.600:2	./.	0/1:20,16:32:36:0.444:2	0/1:10,20:32:30:0.667:2	0/1:17,20:31:37:0.541:2	0/1:15,18:33:33:0.545:2	0/1:19,19:33:38:0.500:2	./.	./.	./.
chr11	124955032	rs948268	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,33:32:92:0.359:2	0/1:21,18:32:39:0.462:2	0/1:0,10:32:10:1.00:2	0/1:73,51:32:124:0.411:2	0/1:51,61:31:112:0.545:2	0/1:45,52:31:97:0.536:2	0/1:58,57:32:115:0.496:2	0/1:0,111:32:111:1.00:2	./.	0/1:0,88:32:88:1.00:2	0/1:52,44:32:96:0.458:2
chr11	124955324	rs371666898	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:32:62:0.065:2	./.	./.	./.	./.
chr11	124955861	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:31:109:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	125351472	rs597570	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:2,42:30:44:0.955:2	0/1:3,39:31:42:0.929:2	./.	./.	0/1:35,34:31:69:0.493:2	./.	./.	./.	./.	0/1:0,59:30:59:1.00:2	./.
chr11	125365285	rs11220099	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:2,73:31:75:0.973:2	0/1:0,31:31:31:1.00:2	./.	./.	0/1:55,31:32:87:0.360:2	./.	./.	./.	./.	0/1:0,105:31:106:1.00:2	./.
chr11	125365418	rs11220100	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:29:5:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	125442427	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:34:108:0.037:2
chr11	125452313	rs4627097	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,13:31:27:0.500:2	0/1:13,12:30:25:0.480:2	./.	0/1:18,4:30:22:0.182:2	0/1:9,12:28:21:0.571:2	0/1:0,27:29:27:1.00:2	0/1:0,24:30:24:1.00:2	./.	0/1:22,7:31:29:0.241:2	./.	./.
chr11	125465862	rs10082632	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,78:34:172:0.456:2
chr11	125465905	rs79017058	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,63:31:139:0.453:2
chr11	125476252	rs34964592	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,87:32:191:0.455:2
chr11	125479363	rs2241502	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:67,52:32:119:0.437:2	0/1:38,24:31:62:0.387:2	./.	0/1:67,45:31:112:0.402:2	0/1:68,45:31:114:0.398:2	0/1:67,50:31:117:0.427:2	0/1:47,51:32:98:0.520:2	./.	0/1:74,51:31:125:0.408:2	0/1:59,43:32:102:0.422:2	0/1:79,61:31:140:0.436:2
chr11	125482998	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.	./.
chr11	125488404	rs17140116	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,35:31:92:0.380:2
chr11	125525195	rs506504	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,12:32:28:0.429:2	0/1:18,8:32:26:0.308:2	0/1:0,11:31:11:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,40:31:40:1.00:2
chr11	125547869	rs34788353	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,60:33:144:0.417:2
chr11	125548018	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,37:32:90:0.411:2
chr11	125616542	rs117352114	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,43:32:87:0.494:2	./.
chr11	125617317	rs496459	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:32:5:1.00:2	0/1:27,35:33:62:0.565:2	./.	./.	./.	0/1:0,51:33:51:1.00:2	0/1:46,31:34:77:0.403:2	./.	0/1:28,31:32:59:0.525:2
chr11	125617606	rs537916	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:28:3:1.00:2	0/1:15,6:30:21:0.286:2	./.	./.	./.	0/1:0,11:28:11:1.00:2	0/1:14,11:31:25:0.440:2	./.	0/1:13,10:31:23:0.435:2
chr11	125617610	rs2114084	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,12:29:25:0.480:2	0/1:10,4:27:14:0.286:2	./.	0/1:7,14:28:21:0.667:2	0/1:19,8:28:27:0.296:2	0/1:19,15:28:34:0.441:2	0/1:9,8:27:17:0.471:2	./.	0/1:11,13:28:24:0.542:2	0/1:11,8:28:19:0.421:2	./.
chr11	125647286	rs76476146	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,60:32:116:0.522:2
chr11	125648503	rs494361	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,115:31:115:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,17:31:17:1.00:2	0/1:3,85:31:88:0.966:2	0/1:1,66:30:67:0.985:2	0/1:68,39:30:107:0.364:2	0/1:61,39:31:100:0.390:2	0/1:1,76:31:77:0.987:2	0/1:0,129:31:129:1.00:2	0/1:0,95:31:95:1.00:2	0/1:72,77:31:150:0.517:2
chr11	125659371	rs78883072	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,35:32:78:0.449:2
chr11	125707761	rs11220236	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,40:31:101:0.396:2	0/1:35,32:30:67:0.478:2	0/1:0,14:30:14:1.00:2	0/1:73,71:30:144:0.493:2	0/1:60,48:29:108:0.444:2	0/1:60,65:29:125:0.520:2	./.	0/1:0,124:30:124:1.00:2	0/1:76,76:31:152:0.500:2	0/1:53,55:30:108:0.509:2	0/1:58,48:30:106:0.453:2
chr11	125763746	rs3088241	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,84:33:167:0.503:2	0/1:84,60:32:144:0.417:2	0/1:0,34:31:34:1.00:2	0/1:81,87:32:168:0.518:2	0/1:104,85:32:189:0.450:2	0/1:93,89:32:182:0.489:2	0/1:186,6:33:192:0.031:2	0/1:0,175:32:175:1.00:2	0/1:119,75:33:194:0.387:2	0/1:88,108:33:196:0.551:2	0/1:103,70:33:173:0.405:2
chr11	125766044	rs549990	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,176:32:177:0.994:2	0/1:1,134:32:135:0.993:2	0/1:0,36:32:36:1.00:2	0/1:4,182:31:186:0.978:2	0/1:0,165:31:165:1.00:2	0/1:68,101:31:169:0.598:2	0/1:153,7:33:160:0.044:2	0/1:0,175:32:175:1.00:2	0/1:0,185:33:185:1.00:2	0/1:1,181:32:182:0.995:2	0/1:92,95:32:187:0.508:2
chr11	125766173	rs622756	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:33:102:1.00:2	0/1:0,48:33:48:1.00:2	0/1:1,4:34:5:0.800:2	0/1:3,84:33:87:0.966:2	0/1:0,57:33:57:1.00:2	0/1:42,41:32:83:0.494:2	./.	0/1:0,70:33:70:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,79:32:79:1.00:2	0/1:68,40:32:108:0.370:2
chr11	125766179	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,22:28:84:0.262:2	./.	./.
chr11	125769354	rs667782	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,5:29:6:0.833:2	./.	./.	0/1:28,18:29:46:0.391:2	./.	0/1:26,40:30:66:0.606:2	./.	./.	0/1:34,37:29:71:0.521:2
chr11	125770270	rs79600654	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,19:32:32:0.594:2	0/1:10,11:32:21:0.524:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	125770425	rs2236681	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,6:30:36:0.167:2	0/1:13,11:29:24:0.458:2	./.	0/1:26,12:28:38:0.316:2	0/1:12,5:28:17:0.294:2	./.	./.	0/1:21,8:30:29:0.276:2	0/1:43,24:30:67:0.358:2	0/1:25,9:29:34:0.265:2	./.
chr11	125788546	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:155,5:29:160:0.031:2	./.	./.	./.	./.	./.	./.
chr11	125788678	rs683155	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:80,59:28:139:0.424:2	0/1:55,37:29:92:0.402:2	0/1:0,7:30:7:1.00:2	0/1:75,54:28:129:0.419:2	0/1:76,25:28:101:0.248:2	0/1:90,50:29:140:0.357:2	0/1:65,49:28:114:0.430:2	0/1:2,143:29:145:0.986:2	0/1:85,54:29:139:0.388:2	0/1:69,69:29:139:0.500:2	0/1:86,58:28:144:0.403:2
chr11	125830970	rs684535	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:32:66:1.00:2	0/1:0,47:32:47:1.00:2	0/1:7,8:25:15:0.533:2	0/1:0,80:31:80:1.00:2	0/1:0,101:31:101:1.00:2	0/1:68,48:32:116:0.414:2	0/1:74,60:31:134:0.448:2	./.	0/1:60,48:32:108:0.444:2	0/1:48,53:32:101:0.525:2	0/1:0,108:31:108:1.00:2
chr11	125831701	rs2276061	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,83:31:84:0.988:2	0/1:0,38:32:38:1.00:2	0/1:5,8:30:13:0.615:2	0/1:55,47:31:102:0.461:2	0/1:99,76:31:175:0.434:2	./.	0/1:104,78:31:182:0.429:2	./.	0/1:83,81:31:164:0.494:2	0/1:61,55:30:116:0.474:2	0/1:1,90:31:91:0.989:2
chr11	125848261	rs3740904	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,39:33:39:1.00:2	0/1:0,25:32:25:1.00:2	0/1:2,6:32:8:0.750:2	./.	0/1:22,31:32:53:0.585:2	./.	0/1:22,29:32:51:0.569:2	./.	0/1:31,23:31:54:0.426:2	0/1:34,22:33:56:0.393:2	0/1:0,59:32:59:1.00:2
chr11	125851055	rs564214	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,7:31:15:0.467:2	./.	./.	./.	./.	0/1:3,81:30:84:0.964:2	./.	0/1:42,31:30:73:0.425:2	./.
chr11	125851181	rs684805	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,31:31:31:1.00:2	./.	0/1:11,8:32:19:0.421:2	./.
chr11	125871715	rs12274923	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,53:29:58:0.914:2	./.	0/1:40,38:30:78:0.487:2	./.
chr11	125871735	rs516664	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,38:31:41:0.927:2	./.	0/1:31,30:32:61:0.492:2	./.
chr11	125891162	rs35131477	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,17:27:37:0.459:2
chr11	125891269	rs3740912	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:31:60:1.00:2	0/1:0,41:31:41:1.00:2	0/1:4,3:28:7:0.429:2	0/1:58,30:30:88:0.341:2	0/1:34,22:30:56:0.393:2	0/1:0,77:30:77:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,97:30:97:1.00:2	0/1:0,83:31:83:1.00:2	0/1:46,44:32:90:0.489:2	0/1:55,37:30:92:0.402:2
chr11	125891340	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:32:43:0.093:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	126073392	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:34:55:0.073:2	./.	./.	./.
chr11	126074192	rs2276312	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:12,12:32:24:0.500:2	0/1:6,14:32:20:0.700:2	./.	./.	./.	./.	0/1:7,8:33:15:0.533:2	./.	./.	./.	./.
chr11	126081403	rs2282580	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,40:29:56:0.714:2	0/1:20,14:29:34:0.412:2	./.	0/1:31,31:30:62:0.500:2	0/1:21,28:29:49:0.571:2	0/1:33,31:30:64:0.484:2	0/1:33,23:29:56:0.411:2	./.	./.	./.	0/1:41,33:29:74:0.446:2
chr11	126135238	rs148731597	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:33:58:0.069:2	./.	./.
chr11	126139100	rs1786702	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:32:72:1.00:2	0/1:0,46:32:46:1.00:2	0/1:4,3:33:7:0.429:2	0/1:26,43:33:69:0.623:2	0/1:25,18:32:43:0.419:2	0/1:27,39:32:66:0.591:2	0/1:30,26:32:56:0.464:2	0/1:45,36:32:81:0.444:2	0/1:0,64:33:64:1.00:2	./.	0/1:0,73:32:73:1.00:2
chr11	126139139	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,45:30:104:0.433:2	0/1:29,33:31:62:0.532:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	126145226	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:31:135:0.030:2	./.	./.
chr11	126146290	rs201062084	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,11:16:38:0.289:2	./.	./.	0/1:60,25:13:86:0.294:2	0/1:69,23:14:92:0.250:2	0/1:44,20:13:65:0.313:2	0/1:66,26:14:92:0.283:2	0/1:65,34:12:99:0.343:2	0/1:65,18:11:84:0.217:2	0/1:42,26:16:68:0.382:2	0/1:32,13:19:45:0.289:2
chr11	126146387	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:104,4:30:108:0.037:2	./.	./.	./.	./.	./.	./.
chr11	126162607	rs3802814	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,30:31:77:0.390:2	0/1:38,48:31:86:0.558:2	./.	./.	./.	./.	./.	0/1:20,26:31:46:0.565:2
chr11	126162843	rs8177374	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,21:31:45:0.467:2	0/1:27,19:29:46:0.413:2	0/1:20,24:31:44:0.545:2	./.	./.	./.	./.	0/1:19,19:31:38:0.500:2
chr11	126162862	rs7932766	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,14:32:46:0.304:2	0/1:13,13:32:26:0.500:2	./.	./.	./.	./.	./.	./.	0/1:34,35:33:69:0.507:2	./.	0/1:26,21:32:47:0.447:2
chr11	126163612	rs8177376	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,23:33:50:0.460:2	0/1:11,12:32:23:0.522:2	./.	./.	./.	./.	./.	./.	0/1:31,38:33:69:0.551:2	./.	0/1:65,28:33:93:0.301:2
chr11	126174164	rs695029	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:25,21:32:46:0.457:2	0/1:28,21:32:49:0.429:2	./.	./.	./.	./.	0/1:41,38:32:79:0.481:2	./.	./.	./.	./.
chr11	126176578	rs637462	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:32:88:1.00:2	0/1:0,52:32:52:1.00:2	0/1:13,7:31:21:0.350:2	0/1:75,66:31:141:0.468:2	0/1:91,54:31:145:0.372:2	0/1:63,72:31:135:0.533:2	0/1:72,61:32:133:0.459:2	0/1:0,144:31:144:1.00:2	0/1:0,117:32:117:1.00:2	./.	0/1:0,98:31:98:1.00:2
chr11	126201403	rs616360	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,11:31:22:0.500:2	0/1:7,4:32:11:0.364:2	./.	./.	./.	./.	./.	./.	0/1:15,12:34:27:0.444:2	./.	0/1:13,20:33:33:0.606:2
chr11	126208226	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:33:181:0.022:2
chr11	126277216	rs2230278	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,35:31:79:0.443:2	0/1:27,15:30:42:0.357:2	./.	./.	./.	0/1:75,71:31:146:0.486:2	./.	0/1:5,134:31:139:0.964:2	0/1:0,124:32:124:1.00:2	./.	0/1:3,93:31:96:0.969:2
chr11	126278075	rs2230279	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,51:32:111:0.459:2	0/1:42,59:31:101:0.584:2	./.	./.	./.	0/1:104,84:31:188:0.447:2	./.	0/1:1,189:31:190:0.995:2	0/1:4,178:32:182:0.978:2	./.	0/1:1,140:32:141:0.993:2
chr11	126278203	rs2298475	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,51:32:115:0.443:2	./.	./.	./.	./.
chr11	126294817	rs948052	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,56:29:100:0.560:2	0/1:26,27:29:53:0.509:2	0/1:7,5:29:12:0.417:2	0/1:1,131:29:133:0.992:2	0/1:1,158:30:159:0.994:2	0/1:54,76:29:131:0.585:2	0/1:0,150:30:150:1.00:2	0/1:0,165:29:165:1.00:2	0/1:73,50:30:123:0.407:2	0/1:1,92:29:93:0.989:2	0/1:0,86:30:86:1.00:2
chr11	126343227	rs111418068	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,31:29:60:0.517:2
chr11	126391297	rs12269776	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,52:28:135:0.385:2	./.	./.	./.	./.	./.	./.
chr11	128333503	rs2230004	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:2,27:31:29:0.931:2	0/1:0,13:32:13:1.00:2	0/1:1,3:32:4:0.750:2	./.	./.	0/1:24,23:32:47:0.489:2	0/1:0,38:32:38:1.00:2	0/1:37,17:32:54:0.315:2	0/1:12,23:33:35:0.657:2	0/1:16,21:33:37:0.568:2	0/1:0,42:32:42:1.00:2
chr11	128350288	rs118149282	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,64:30:135:0.474:2	0/1:52,44:31:96:0.458:2	./.	./.
chr11	128355977	rs149636924	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,13:32:63:0.206:2	./.	./.	./.	./.	./.	./.	./.
chr11	128391855	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,4:33:28:0.143:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	128564179	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:29:12:0.583:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	128651893	rs35195224	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,65:33:139:0.468:2	0/1:46,43:32:89:0.483:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	128675292	rs7113191	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:35,31:33:66:0.470:2	0/1:28,20:32:48:0.417:2	./.	./.	0/1:23,26:32:49:0.531:2	./.	./.	./.	./.	0/1:33,30:33:63:0.476:2	./.
chr11	128772452	rs11221503	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:1,22:30:23:0.957:2	0/1:1,18:29:20:0.947:2	./.	./.	./.	./.	./.	./.	./.	0/1:20,9:30:29:0.310:2	./.
chr11	128781339	rs6590357	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:31:70:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,14:31:14:1.00:2	0/1:1,117:31:118:0.992:2	0/1:3,150:30:153:0.980:2	0/1:0,105:31:105:1.00:2	0/1:1,150:31:151:0.993:2	0/1:0,150:30:150:1.00:2	0/1:0,94:31:94:1.00:2	0/1:0,94:31:94:1.00:2	0/1:0,78:29:78:1.00:2
chr11	128781978	rs7118824	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:32:44:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,4:34:4:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,43:33:43:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,43:32:43:1.00:2
chr11	128782002	rs7118833	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:29:31:1.00:2	0/1:0,14:27:14:1.00:2	0/1:0,2:27:2:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,25:28:25:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,29:29:29:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,41:28:41:1.00:2	0/1:0,37:29:37:1.00:2
chr11	128782012	rs7102584	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:32:30:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,31:31:31:1.00:2
chr11	128786518	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,7:22:67:0.104:2	./.	./.	./.	./.	./.	./.	./.
chr11	128838850	rs116891747	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,38:32:69:0.551:2	./.	./.	./.	./.	./.	./.
chr11	128839156	rs3740829	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,60:32:128:0.469:2
chr11	128839526	rs60847789	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,25:30:45:0.556:2
chr11	128842742	rs139276969	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,62:32:123:0.508:2	0/1:26,39:32:65:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	128842873	rs581258	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:33:11:0.727:2	./.	./.	0/1:35,42:32:77:0.545:2	./.	0/1:52,42:32:94:0.447:2	./.	./.	0/1:64,62:33:126:0.492:2
chr11	128851333	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:135,4:32:139:0.029:2	./.	./.	./.	./.	./.	./.
chr11	128868239	rs670440	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,29:31:29:1.00:2	0/1:0,25:32:25:1.00:2	./.	0/1:0,55:32:55:1.00:2	0/1:10,12:32:22:0.545:2	0/1:28,32:32:61:0.533:2	0/1:0,35:31:35:1.00:2	0/1:31,15:33:46:0.326:2	0/1:0,60:33:60:1.00:2	0/1:0,50:32:51:1.00:2	./.
chr11	128993344	rs201676073	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,47:32:130:0.362:2
chr11	128994739	rs76444326	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,18:32:36:0.500:2	./.	./.	./.	./.	./.	./.
chr11	129321066	rs10791011	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,12:31:26:0.462:2	./.
chr11	129722553	rs558813	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,5:30:19:0.263:2	./.	0/1:78,55:31:133:0.414:2	./.	./.	./.	./.	./.	./.
chr11	129725604	rs200613797	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:70,8:20:78:0.103:2	./.	./.	0/1:105,12:15:118:0.103:2	./.	./.	./.	0/1:147,22:11:169:0.130:2	./.	./.	0/1:86,17:13:103:0.165:2
chr11	129727255	rs78733006	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,78:31:186:0.419:2	./.	./.	./.	./.	./.	./.	./.
chr11	129735822	rs117354966	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,21:32:57:0.368:2	0/1:19,16:32:35:0.457:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	129744071	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,33:33:69:0.478:2	./.	./.
chr11	129744075	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,5:29:84:0.060:2
chr11	129746707	rs2229650	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,39:31:108:0.361:2	./.	0/1:58,63:31:121:0.521:2	0/1:0,120:32:121:1.00:2	0/1:64,59:31:123:0.480:2	./.	./.	./.
chr11	129754644	rs1131972	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,6:29:7:0.857:2	0/1:1,61:30:62:0.984:2	0/1:0,47:29:47:1.00:2	0/1:1,51:29:52:0.981:2	0/1:1,54:29:55:0.982:2	0/1:0,47:28:47:1.00:2	0/1:28,42:31:70:0.600:2	0/1:0,49:29:50:1.00:2	./.
chr11	129754668	rs2303662	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,28:30:68:0.412:2	./.	0/1:29,26:29:55:0.473:2	0/1:3,64:30:67:0.955:2	0/1:0,57:31:57:1.00:2	./.	./.	./.
chr11	129758641	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:30:50:0.080:2	./.	./.	./.	./.	./.
chr11	129785594	rs3734073	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,43:32:114:0.377:2	0/1:67,80:31:147:0.544:2	0/1:69,60:32:129:0.465:2	./.	./.	0/1:52,40:33:92:0.435:2	0/1:51,52:33:103:0.505:2	./.
chr11	129785615	rs3734071	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	129794950	rs2241571	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,9:31:15:0.600:2	0/1:0,142:30:142:1.00:2	0/1:75,59:30:134:0.440:2	0/1:92,41:29:133:0.308:2	./.	./.	0/1:73,82:31:156:0.529:2	0/1:68,41:29:109:0.376:2	./.
chr11	129801043	rs2277033	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,32:32:32:1.00:2	0/1:100,86:32:187:0.462:2	0/1:98,89:32:187:0.476:2	0/1:86,97:32:183:0.530:2	./.	./.	0/1:93,80:33:173:0.462:2	0/1:97,86:32:183:0.470:2	./.
chr11	129801109	rs200906767	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:104,11:28:115:0.096:2	./.	./.	0/1:94,12:27:106:0.113:2	0/1:112,16:22:128:0.125:2	0/1:102,8:31:110:0.073:2	0/1:120,19:21:139:0.137:2	0/1:133,12:19:145:0.083:2	0/1:110,12:21:122:0.098:2	0/1:103,9:22:112:0.080:2	0/1:122,12:28:134:0.090:2
chr11	129830796	rs11221912	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,7:31:15:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	130058047	rs62642510	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,33:29:54:0.611:2	0/1:19,23:28:42:0.548:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,32:29:68:0.471:2
chr11	130066261	rs17667603	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	0/1:28,17:32:45:0.378:2	./.	./.	./.	./.	./.
chr11	130066335	rs476106	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,15:32:15:1.00:2	0/1:0,7:29:7:1.00:2	./.	./.	0/1:6,7:32:13:0.538:2	0/1:9,7:30:16:0.438:2	0/1:0,15:31:15:1.00:2	./.	0/1:0,20:32:20:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,16:30:16:1.00:2
chr11	130068491	rs11827924	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:42,34:31:76:0.447:2	0/1:29,24:32:53:0.453:2	./.	./.	0/1:1,96:31:97:0.990:2	./.	./.	./.	0/1:50,44:32:94:0.468:2	./.	./.
chr11	130068938	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:31:38:0.105:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	130078534	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:33:190:0.021:2	./.	./.	./.
chr11	130275533	rs61753089	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,44:31:107:0.411:2	./.	./.	./.	./.
chr11	130275749	rs11222085	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:20,26:32:46:0.565:2	0/1:13,23:31:36:0.639:2	./.	0/1:35,27:31:62:0.435:2	./.	./.	./.	./.	./.	0/1:29,25:32:54:0.463:2	0/1:39,25:31:64:0.391:2
chr11	130275999	rs34003913	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,29:31:57:0.509:2	./.	./.	./.	./.	./.	./.	0/1:19,18:32:37:0.486:2
chr11	130281488	rs2131535	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:30:24:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,7:30:7:1.00:2	0/1:28,12:30:40:0.300:2	0/1:21,14:30:35:0.400:2	0/1:1,38:29:39:0.974:2	0/1:0,52:30:52:1.00:2	./.	0/1:0,43:30:43:1.00:2	0/1:24,5:31:29:0.172:2	0/1:20,11:29:31:0.355:2
chr11	130288952	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,10:33:15:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	130332577	rs200083994	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:32:38:0.079:2
chr11	130339312	rs731446	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,21:30:35:0.600:2	0/1:19,15:31:34:0.441:2	0/1:5,6:31:11:0.545:2	0/1:0,52:32:52:1.00:2	0/1:0,78:32:78:1.00:2	0/1:43,17:32:60:0.283:2	0/1:46,30:31:76:0.395:2	0/1:31,36:31:67:0.537:2	0/1:34,39:33:73:0.534:2	0/1:0,43:32:43:1.00:2	0/1:22,18:31:40:0.450:2
chr11	130343668	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr11	130343686	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr11	130343702	rs61744317	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:29:4:1.00:2	./.	./.	./.	./.
chr11	130542882	rs7933829	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,32:31:82:0.390:2	./.	./.	./.
chr11	130543032	rs182248135	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,57:32:145:0.393:2	./.	./.	./.	./.
chr11	130750642	rs2298566	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,42:30:43:0.977:2	0/1:0,44:30:44:1.00:2	0/1:0,4:29:4:1.00:2	0/1:1,62:30:63:0.984:2	0/1:30,42:29:72:0.583:2	0/1:0,76:30:76:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,82:30:82:1.00:2	0/1:1,55:31:56:0.982:2	0/1:1,41:31:42:0.976:2	0/1:2,62:30:64:0.969:2
chr11	130773279	rs61759531	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,22:34:50:0.440:2	./.	./.
chr11	130776524	rs4414223	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,53:33:56:0.946:2	0/1:1,30:31:31:0.968:2	0/1:0,5:32:5:1.00:2	0/1:50,45:33:95:0.474:2	0/1:38,15:32:53:0.283:2	0/1:30,43:32:73:0.589:2	0/1:43,22:32:65:0.338:2	0/1:0,79:33:79:1.00:2	0/1:2,67:34:69:0.971:2	0/1:42,17:32:59:0.288:2	0/1:46,47:32:93:0.505:2
chr11	130776613	rs4373936	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,32:32:33:0.970:2	0/1:0,21:31:21:1.00:2	0/1:0,7:30:7:1.00:2	0/1:38,23:33:61:0.377:2	0/1:22,9:32:31:0.290:2	0/1:7,18:32:25:0.720:2	0/1:26,19:32:45:0.422:2	0/1:0,58:32:58:1.00:2	0/1:0,30:33:30:1.00:2	0/1:33,14:32:47:0.298:2	0/1:27,31:32:58:0.534:2
chr11	130777886	rs2276098	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,12:33:18:0.667:2	0/1:43,52:33:95:0.547:2	0/1:54,46:32:100:0.460:2	./.	./.	./.	./.	0/1:41,37:32:78:0.474:2	0/1:54,55:32:109:0.505:2
chr11	130780015	rs1781	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:33:30:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,6:32:6:1.00:2	0/1:12,14:32:26:0.538:2	0/1:27,15:32:42:0.357:2	0/1:16,16:33:32:0.500:2	0/1:23,17:33:40:0.425:2	0/1:0,31:32:31:1.00:2	0/1:0,41:33:41:1.00:2	0/1:20,19:32:39:0.487:2	0/1:26,17:33:43:0.395:2
chr11	130780225	rs681982	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,9:32:9:1.00:2	0/1:0,9:31:9:1.00:2	./.	0/1:0,15:31:15:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,20:31:20:1.00:2
chr11	130784396	rs62621284	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,5:32:13:0.385:2	0/1:56,55:33:111:0.495:2	0/1:49,52:31:101:0.515:2	./.	./.	./.	./.	0/1:59,52:33:111:0.468:2	0/1:61,58:31:119:0.487:2
chr11	130784444	rs201162937	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,9:30:21:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr11	130784488	rs61734874	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,11:27:20:0.550:2	0/1:92,84:30:176:0.477:2	0/1:90,71:29:161:0.441:2	./.	./.	./.	./.	0/1:101,63:29:164:0.384:2	0/1:102,80:30:182:0.440:2
chr11	130784616	rs3190345	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,33:32:54:0.611:2	0/1:18,17:31:35:0.486:2	./.	./.	./.	./.	0/1:27,25:31:52:0.481:2	0/1:40,23:32:63:0.365:2
chr11	130784647	rs1050081	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:32:3:0.667:2	0/1:19,20:32:39:0.513:2	0/1:20,15:32:35:0.429:2	./.	./.	./.	./.	0/1:22,21:34:43:0.488:2	0/1:43,16:32:59:0.271:2
chr11	130784683	rs7935349	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,23:30:41:0.561:2	./.	./.	./.	./.	./.	./.
chr11	130784694	rs61736758	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:31:5:0.600:2	0/1:32,18:32:50:0.360:2	0/1:26,17:32:43:0.395:2	./.	./.	./.	./.	0/1:19,17:31:36:0.472:2	0/1:54,15:32:69:0.217:2
chr11	130784707	rs61736752	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:30:5:0.600:2	0/1:37,23:31:60:0.383:2	0/1:31,15:30:46:0.326:2	./.	./.	./.	./.	0/1:21,17:29:38:0.447:2	0/1:53,23:30:76:0.303:2
chr11	130784754	rs3751037	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:33:64:1.00:2	0/1:1,35:32:36:0.972:2	0/1:0,9:33:9:1.00:2	0/1:0,91:33:91:1.00:2	0/1:34,23:32:57:0.404:2	0/1:0,56:33:56:1.00:2	0/1:2,77:33:79:0.975:2	0/1:0,84:33:84:1.00:2	0/1:0,90:34:90:1.00:2	0/1:0,58:33:58:1.00:2	0/1:65,42:33:108:0.393:2
chr11	130784886	rs117260465	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,12:29:39:0.308:2	./.	./.	./.	./.
chr11	130784971	rs3751036	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,47:33:47:1.00:2	0/1:2,37:32:39:0.949:2	0/1:0,40:32:40:1.00:2	0/1:1,50:30:51:0.980:2	0/1:0,51:32:51:1.00:2	0/1:1,50:33:51:0.980:2	0/1:0,41:32:41:1.00:2	0/1:37,31:32:68:0.456:2
chr11	130785205	rs3751035	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,5:33:11:0.455:2	0/1:21,21:31:42:0.500:2	0/1:48,21:32:69:0.304:2	./.	./.	./.	./.	0/1:18,9:32:27:0.333:2	0/1:31,17:33:48:0.354:2
chr11	130785304	rs3751034	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,14:30:42:0.333:2	0/1:17,24:31:41:0.585:2	./.	./.	./.	./.	0/1:11,16:30:27:0.593:2	0/1:28,26:30:54:0.481:2
chr11	132177633	rs2305271	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:31:32:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,5:28:5:1.00:2	0/1:0,45:30:45:1.00:2	0/1:40,25:30:65:0.385:2	0/1:0,52:31:52:1.00:2	0/1:0,51:30:51:1.00:2	./.	0/1:0,60:32:60:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,42:30:42:1.00:2
chr11	132306610	rs141333534	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,44:31:87:0.506:2	./.	./.	./.	./.	./.
chr11	133712409	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,5:32:189:0.026:2	./.	./.	./.
chr11	133714522	rs2282602	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,64:29:65:1.00:2	./.	./.	0/1:0,37:29:37:1.00:2	./.	0/1:47,33:31:81:0.413:2	0/1:0,49:30:49:1.00:2	./.
chr11	133788992	rs12800905	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,6:28:11:0.545:2	0/1:6,7:26:13:0.538:2	./.	./.	0/1:5,7:32:12:0.583:2	./.	0/1:6,5:31:11:0.455:2
chr11	133791166	rs150544201	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,19:31:58:0.328:2	0/1:17,31:31:48:0.646:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	133805585	rs329637	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,23:32:43:0.535:2	0/1:44,39:31:83:0.470:2	0/1:0,59:32:59:1.00:2	./.	./.	0/1:0,41:33:41:1.00:2	./.	0/1:21,5:33:26:0.192:2
chr11	133807819	rs329635	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,48:31:96:0.500:2	./.	./.	./.	./.	0/1:1,112:33:113:0.991:2	./.	./.
chr11	133814191	rs595986	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,85:29:85:1.00:2	0/1:0,64:29:64:1.00:2	0/1:4,9:30:13:0.692:2	./.	0/1:0,169:29:170:1.00:2	0/1:3,119:29:122:0.975:2	0/1:112,80:30:192:0.417:2	0/1:98,86:30:184:0.467:2	0/1:0,143:30:143:1.00:2	0/1:1,113:29:115:0.991:2	0/1:0,99:28:99:1.00:2
chr11	133815981	rs10894768	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:38,26:33:64:0.406:2	0/1:28,16:32:44:0.364:2	./.	0/1:62,40:33:102:0.392:2	./.	./.	0/1:89,33:32:122:0.270:2	./.	./.	./.	0/1:35,29:32:64:0.453:2
chr11	134018656	rs610382	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,33:33:70:0.471:2	0/1:27,25:32:52:0.481:2	./.	./.	./.	0/1:50,33:32:83:0.398:2	./.	0/1:54,50:32:104:0.481:2	./.	0/1:37,30:32:67:0.448:2	0/1:44,44:32:88:0.500:2
chr11	134023172	rs117140117	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,53:32:132:0.405:2	./.
chr11	134026934	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:34:116:0.034:2	./.	./.	./.	./.	./.
chr11	134047243	rs2276265	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,21:32:69:0.304:2	0/1:23,25:33:49:0.521:2	./.	./.	./.	0/1:75,85:32:160:0.531:2	./.	0/1:96,95:32:191:0.497:2	./.	0/1:44,49:32:93:0.527:2	0/1:72,56:32:128:0.438:2
chr11	134073019	rs2305379	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:49,30:31:79:0.380:2	0/1:30,15:32:45:0.333:2	./.	./.	./.	./.	./.	0/1:25,26:31:51:0.510:2	./.	0/1:26,41:31:67:0.612:2	./.
chr11	134073792	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,3:37:24:0.125:2	./.
chr11	134131659	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:32:156:0.026:2	./.	./.	./.	./.
chr11	134151975	rs472287	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,69:33:69:1.00:2	0/1:2,65:31:68:0.970:2	0/1:0,57:33:57:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,60:33:60:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,53:30:53:1.00:2
chr11	134158745	rs3824995	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,23:27:54:0.426:2	./.	./.	./.	./.	./.	./.
chr11	134182375	rs2509062	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,14:30:14:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,25:31:25:1.00:2
chr11	134188542	rs481252	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:31:6:1.00:2	0/1:61,48:31:109:0.440:2	0/1:60,40:30:100:0.400:2	0/1:61,55:30:116:0.474:2	0/1:59,68:31:127:0.535:2	0/1:4,116:31:120:0.967:2	./.	./.	0/1:0,119:31:119:1.00:2
chr11	134188559	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,45:32:88:0.511:2	0/1:32,40:32:72:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr11	134202036	rs7124693	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,25:29:52:0.481:2	./.	0/1:0,36:30:36:1.00:2	0/1:24,30:31:54:0.556:2	./.	./.	./.
chr11	134212782	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:30:57:0.070:2	./.	./.
chr11	134234226	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,4:31:99:0.040:2	./.	./.	./.	./.	./.	./.
chr11	134241035	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:34:82:0.049:2	./.	./.
chr11	134244123	rs3741097	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,61:31:157:0.389:2	./.	./.	0/1:68,82:30:150:0.547:2	0/1:73,68:31:141:0.482:2	./.	0/1:0,119:31:119:1.00:2	./.
chr12	248202	rs56204927	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.	./.	0/1:1,3:32:4:0.750:2	0/1:0,5:32:5:1.00:2	0/1:0,6:31:6:1.00:2	./.	0/1:0,3:33:3:1.00:2
chr12	274647	rs4980859	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,115:33:116:0.991:2	0/1:2,73:32:75:0.973:2	./.	0/1:0,143:33:143:1.00:2	0/1:75,80:32:155:0.516:2	0/1:91,85:32:176:0.483:2	0/1:91,72:33:163:0.442:2	0/1:101,86:33:187:0.460:2	0/1:2,176:33:178:0.989:2	./.	./.
chr12	280349	rs2291919	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,139:31:144:0.965:2	0/1:1,84:31:85:0.988:2	./.	0/1:82,105:31:187:0.561:2	0/1:100,95:31:195:0.487:2	0/1:92,98:31:190:0.516:2	0/1:86,104:30:190:0.547:2	0/1:99,90:31:189:0.476:2	0/1:4,184:32:188:0.979:2	./.	./.
chr12	305353	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,14:30:65:0.215:2	./.	./.	./.	./.	./.	./.	./.
chr12	305398	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:33:65:0.062:2
chr12	311949	rs216250	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,20:33:52:0.385:2	0/1:9,18:31:27:0.667:2	0/1:0,7:33:7:1.00:2	0/1:31,38:32:69:0.551:2	0/1:36,21:32:57:0.368:2	./.	0/1:37,40:33:77:0.519:2	./.	./.	0/1:19,30:33:49:0.612:2	0/1:0,72:33:72:1.00:2
chr12	319111	rs526690	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,23:29:50:0.460:2	0/1:16,18:28:34:0.529:2	./.	0/1:45,21:27:66:0.318:2	0/1:39,26:29:65:0.400:2	0/1:0,58:29:58:1.00:2	0/1:55,29:28:84:0.345:2	0/1:0,63:29:63:1.00:2	0/1:1,68:29:69:0.986:2	0/1:26,23:30:49:0.469:2	./.
chr12	319125	rs557881	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,26:30:52:0.510:2	0/1:15,17:30:32:0.531:2	./.	0/1:36,20:31:56:0.357:2	0/1:45,21:30:66:0.318:2	0/1:0,56:31:56:1.00:2	0/1:53,21:30:74:0.284:2	0/1:0,58:30:58:1.00:2	0/1:1,70:31:71:0.986:2	0/1:24,21:31:45:0.467:2	./.
chr12	332362	rs2289954	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,29:32:60:0.483:2	0/1:41,47:32:88:0.534:2	./.	./.	./.
chr12	406292	rs2229351	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:33:4:0.750:2	./.	0/1:27,20:32:47:0.426:2	0/1:16,23:32:39:0.590:2	./.	./.	./.	./.	0/1:27,12:33:39:0.308:2
chr12	406293	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,4:32:48:0.083:2	./.	./.	./.	./.	./.	./.
chr12	427575	rs11062385	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:31:11:0.273:2	./.	0/1:23,18:30:41:0.439:2	0/1:36,40:30:76:0.526:2	./.	./.	./.	./.	0/1:48,37:30:85:0.435:2
chr12	431586	rs74894801	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,9:32:16:0.563:2	./.	./.	./.	./.	./.	./.
chr12	438048	rs372588426	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:133,7:28:140:0.050:2	./.	./.	./.	./.	./.	./.
chr12	520941	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,40:29:68:0.588:2	./.	./.	./.	./.	./.
chr12	520947	rs4980895	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,32:30:60:0.533:2	0/1:56,26:30:82:0.317:2	./.	./.	./.	./.	./.
chr12	547595	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,32:29:73:0.438:2	./.	./.	./.	./.	./.
chr12	547601	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:33:89:0.045:2	./.	./.
chr12	547683	rs735295	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,59:29:129:0.457:2	0/1:49,25:28:74:0.338:2	./.	./.	./.	0/1:74,67:29:141:0.475:2	./.	./.	0/1:0,142:30:142:1.00:2	0/1:0,150:29:150:1.00:2	./.
chr12	549793	rs150919241	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,33:32:73:0.452:2
chr12	644337	rs2075033	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,4:33:31:0.129:2	./.	./.	./.	./.	./.	./.
chr12	654617	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:29:56:0.071:2
chr12	657404	rs11063529	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,12:32:12:1.00:2	0/1:62,54:33:116:0.466:2	./.	./.	0/1:108,51:32:159:0.321:2	0/1:3,158:32:161:0.981:2	0/1:2,119:33:121:0.983:2	0/1:70,43:33:113:0.381:2	./.
chr12	661279	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:31:161:0.025:2	./.	./.	./.	./.
chr12	661656	rs7298766	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,31:33:31:1.00:2	0/1:100,96:33:196:0.490:2	./.	./.	0/1:107,89:33:196:0.454:2	0/1:109,86:33:195:0.441:2	0/1:0,187:34:187:1.00:2	0/1:110,85:33:195:0.436:2	./.
chr12	662448	rs758790	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,9:28:36:0.250:2	0/1:10,6:29:16:0.375:2	0/1:0,13:30:13:1.00:2	0/1:24,17:29:41:0.415:2	0/1:29,19:30:48:0.396:2	./.	0/1:34,16:28:50:0.320:2	0/1:43,20:29:63:0.317:2	0/1:1,40:31:41:0.976:2	0/1:0,42:29:42:1.00:2	0/1:30,14:29:44:0.318:2
chr12	662838	rs1056008	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:29:6:1.00:2	0/1:21,15:29:36:0.417:2	./.	./.	0/1:19,16:30:35:0.457:2	0/1:29,19:27:49:0.396:2	0/1:0,25:29:25:1.00:2	0/1:12,12:31:24:0.500:2	./.
chr12	662873	rs148059237	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,10:26:22:0.455:2
chr12	670520	rs149363012	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,28:30:67:0.418:2
chr12	670541	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:32:106:0.038:2	./.	./.	./.
chr12	670595	rs36078145	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:25,14:32:39:0.359:2	0/1:11,18:30:29:0.621:2	0/1:3,7:31:10:0.700:2	./.	./.	./.	./.	./.	0/1:40,23:30:63:0.365:2	./.	./.
chr12	674486	rs144276869	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,77:31:149:0.517:2	./.
chr12	862989	rs3168640	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:29:40:1.00:2	0/1:0,17:28:17:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,74:29:74:1.00:2	0/1:0,63:28:63:1.00:2	0/1:0,73:29:73:1.00:2	0/1:0,84:28:84:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,36:29:36:1.00:2
chr12	863152	rs11554421	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.
chr12	863415	rs72647374	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,25:29:58:0.431:2	./.	./.	./.	./.	./.
chr12	939302	rs10774466	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,134:30:136:0.985:2	0/1:2,107:30:109:0.982:2	./.	0/1:2,180:31:182:0.989:2	0/1:96,59:30:155:0.381:2	0/1:110,83:30:193:0.430:2	0/1:1,156:31:158:0.994:2	0/1:116,78:30:194:0.402:2	0/1:1,154:31:156:0.994:2	0/1:1,137:31:138:0.993:2	0/1:101,77:29:179:0.433:2
chr12	968489	rs2286006	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,12:28:36:0.333:2	./.	./.	./.	./.	0/1:24,16:29:40:0.400:2	./.
chr12	971291	rs2286007	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:30:13:0.538:2	./.	./.	./.	./.	0/1:66,53:30:119:0.445:2	./.	./.	./.
chr12	987482	rs1012729	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,69:31:69:1.00:2	0/1:0,34:31:34:1.00:2	./.	0/1:0,106:30:107:1.00:2	0/1:81,58:30:139:0.417:2	0/1:72,62:30:134:0.463:2	0/1:2,110:31:112:0.982:2	0/1:58,48:31:106:0.453:2	0/1:2,103:31:105:0.981:2	0/1:0,67:30:67:1.00:2	0/1:71,51:31:122:0.418:2
chr12	988894	rs9804992	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:46,38:32:84:0.452:2	0/1:31,18:32:49:0.367:2	./.	./.	0/1:53,37:31:90:0.411:2	./.	./.	./.	./.	./.	0/1:51,44:31:95:0.463:2
chr12	990912	rs956868	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:33:66:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,45:32:45:1.00:2	0/1:3,74:32:77:0.961:2	0/1:0,83:32:83:1.00:2	0/1:0,66:33:66:1.00:2	0/1:19,23:33:42:0.548:2	0/1:2,71:32:73:0.973:2
chr12	993908	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2	./.	./.	./.
chr12	993930	rs7300444	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:77,64:31:141:0.454:2	0/1:49,53:31:102:0.520:2	./.	0/1:1,191:30:192:0.995:2	./.	0/1:119,76:29:195:0.390:2	0/1:1,149:30:150:0.993:2	0/1:117,77:30:194:0.397:2	0/1:0,184:31:184:1.00:2	0/1:90,76:31:166:0.458:2	./.
chr12	994014	rs10849577	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,61:28:134:0.455:2	./.
chr12	994487	rs7955371	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:33:50:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,77:33:77:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,77:31:77:1.00:2
chr12	994792	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:33:103:0.039:2
chr12	998365	rs12828016	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:36,35:32:71:0.493:2	0/1:27,28:31:55:0.509:2	0/1:0,7:30:7:1.00:2	./.	0/1:1,41:29:42:0.976:2	0/1:43,35:29:78:0.449:2	./.	0/1:58,43:31:101:0.426:2	./.	./.	0/1:1,96:31:97:0.990:2
chr12	1003794	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:32:134:0.030:2	./.	./.	./.	./.
chr12	1017197	rs4766334	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,73:32:73:1.00:2
chr12	1137217	rs35037408	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,19:29:40:0.475:2	0/1:15,10:28:25:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	1219400	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:31:136:0.029:2	./.	./.
chr12	1481038	rs35478691	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,8:33:25:0.320:2	./.	./.
chr12	1553797	rs12319376	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,8:34:17:0.500:2	0/1:6,8:31:14:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	1702852	rs150585689	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,28:31:67:0.418:2	0/1:24,29:31:53:0.547:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	1702912	rs35466364	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,10:29:21:0.476:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	1893222	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	1902905	rs33912216	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,38:30:49:0.776:2	0/1:35,61:29:96:0.635:2	./.	./.	0/1:27,39:30:66:0.591:2	0/1:38,46:31:84:0.548:2	./.
chr12	1908896	rs188700805	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,22:31:39:0.564:2	./.	./.	./.	./.	./.
chr12	1910786	rs62621429	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,25:31:54:0.463:2	./.
chr12	1919735	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:32:143:0.028:2	./.	./.	./.
chr12	1940514	rs41276696	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,21:29:48:0.438:2	./.	./.	./.	./.	./.
chr12	1949939	rs33972365	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,17:32:34:0.500:2	0/1:18,9:31:27:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	1983782	rs758160	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,96:32:191:0.503:2	0/1:113,81:32:194:0.418:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	1988167	rs7966806	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,3:30:14:0.214:2	0/1:6,4:28:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	1989018	rs60945277	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,33:29:53:0.623:2	0/1:14,15:28:29:0.517:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	1992144	rs183426606	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,90:31:190:0.474:2	./.	./.	./.	./.	./.	./.
chr12	1993423	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:32:77:0.052:2	./.	./.	./.
chr12	1995118	rs61386831	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,23:31:58:0.397:2	0/1:13,19:32:32:0.594:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	1995403	rs10735005	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,154:30:154:1.00:2	0/1:0,92:30:92:1.00:2	0/1:0,34:30:34:1.00:2	./.	0/1:103,93:30:196:0.474:2	0/1:1,194:30:195:0.995:2	0/1:2,194:30:196:0.990:2	0/1:0,196:30:196:1.00:2	0/1:0,192:31:192:1.00:2	0/1:82,111:30:194:0.575:2	0/1:0,172:30:172:1.00:2
chr12	2024081	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:28:194:0.026:2	./.	./.	./.	./.
chr12	2024092	rs73038195	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,59:32:106:0.557:2	0/1:29,30:32:59:0.508:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	2062166	rs144438349	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,4:33:96:0.042:2	./.	./.	./.	./.	./.	./.	./.
chr12	2558186	rs1544514	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,20:29:59:0.339:2	./.	./.	0/1:19,10:32:29:0.345:2	0/1:38,23:31:61:0.377:2	./.	./.	0/1:32,33:32:65:0.508:2
chr12	2694638	rs215976	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:14,8:30:22:0.364:2	0/1:7,9:31:16:0.563:2	./.	./.	0/1:16,9:31:25:0.360:2	./.	./.	./.	./.	./.	./.
chr12	2715785	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:162,4:31:166:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr12	2721137	rs216008	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:45,31:30:76:0.408:2	0/1:26,23:30:49:0.469:2	./.	./.	0/1:77,57:30:134:0.425:2	./.	./.	./.	./.	0/1:57,40:30:97:0.412:2	./.
chr12	2760898	rs56180838	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,58:31:107:0.542:2	0/1:40,25:30:65:0.385:2	./.	./.	./.	./.	./.
chr12	2788810	rs72552065	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,67:30:68:0.985:2	./.	./.	./.
chr12	2788879	rs1051375	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,20:33:40:0.500:2	0/1:8,10:32:18:0.556:2	0/1:0,6:32:6:1.00:2	0/1:7,18:31:25:0.720:2	0/1:5,11:31:16:0.688:2	0/1:12,11:31:23:0.478:2	0/1:2,6:33:8:0.750:2	0/1:0,22:32:22:1.00:2	0/1:0,17:32:17:1.00:2	0/1:3,6:32:9:0.667:2	0/1:0,13:32:13:1.00:2
chr12	2791130	rs10848683	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:32:25:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,37:33:37:1.00:2	0/1:1,37:32:38:0.974:2	0/1:1,43:32:44:0.977:2	0/1:0,22:33:22:1.00:2	0/1:0,22:33:22:1.00:2
chr12	2791132	rs10774053	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:31:25:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,37:32:37:1.00:2	0/1:1,37:31:38:0.974:2	0/1:1,43:31:44:0.977:2	0/1:0,22:32:22:1.00:2	0/1:0,22:32:22:1.00:2
chr12	2791205	rs10774054	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:33:24:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,46:34:46:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,40:33:40:1.00:2
chr12	2794921	rs200231105	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,6:31:61:0.098:2	./.
chr12	2794937	rs201777030	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:37,3:33:40:0.075:2	./.	0/1:55,4:30:59:0.068:2	./.	./.	0/1:85,6:31:91:0.066:2	./.	0/1:83,8:33:91:0.088:2	0/1:61,5:33:66:0.076:2	0/1:58,6:34:65:0.094:2
chr12	2794977	rs56270948	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,6:31:90:0.067:2	./.	0/1:127,5:30:132:0.038:2	./.	0/1:74,5:30:79:0.063:2	./.
chr12	2797693	rs199621004	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,8:14:46:0.174:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	2908330	rs56196860	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,23:30:59:0.390:2	./.	./.	./.	./.	./.	./.
chr12	2944024	rs35645225	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,36:29:81:0.444:2	0/1:28,32:30:60:0.533:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	2968078	rs28919870	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,9:32:17:0.529:2	./.	./.	./.	./.	./.	./.
chr12	2968458	rs2215292	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,26:33:26:1.00:2	0/1:0,15:32:15:1.00:2	./.	0/1:0,15:32:15:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,13:34:13:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,22:32:22:1.00:2
chr12	2973615	rs2072360	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:21,15:33:36:0.417:2	0/1:16,12:32:28:0.429:2	0/1:8,3:32:11:0.273:2	./.	./.	./.	./.	./.	./.	0/1:33,29:32:62:0.468:2	./.
chr12	2997397	rs2907608	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,51:32:51:1.00:2	0/1:0,30:32:30:1.00:2	0/1:2,6:29:8:0.750:2	./.	./.	0/1:38,29:31:67:0.433:2	./.	0/1:58,31:32:89:0.348:2	./.	0/1:33,37:32:70:0.529:2	./.
chr12	3046802	rs33973716	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:44,58:29:102:0.569:2	0/1:39,31:29:70:0.443:2	0/1:7,13:30:20:0.650:2	./.	0/1:39,20:28:59:0.339:2	./.	./.	./.	./.	./.	./.
chr12	3049698	rs998814	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:30,30:31:60:0.500:2	0/1:21,15:30:36:0.417:2	0/1:6,5:30:11:0.455:2	./.	0/1:30,31:29:61:0.508:2	./.	./.	./.	./.	./.	./.
chr12	3129932	rs71583736	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,39:33:76:0.513:2	./.	./.	./.
chr12	3131110	rs373793296	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:33:82:0.049:2	./.	./.	./.	./.	./.
chr12	3310439	rs740776	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:76,76:31:152:0.500:2	0/1:57,32:32:89:0.360:2	0/1:0,12:32:12:1.00:2	0/1:113,70:31:183:0.383:2	0/1:106,47:31:153:0.307:2	0/1:108,69:30:177:0.390:2	0/1:1,121:31:122:0.992:2	0/1:3,180:31:183:0.984:2	0/1:4,161:32:165:0.976:2	0/1:88,69:31:157:0.439:2	0/1:2,152:31:154:0.987:2
chr12	3387697	rs16930370	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:58,48:29:106:0.453:2	0/1:37,33:29:70:0.471:2	./.	0/1:83,57:29:140:0.407:2	0/1:80,88:29:168:0.524:2	./.	./.	./.	0/1:74,62:29:136:0.456:2	./.	0/1:75,77:29:152:0.507:2
chr12	3387735	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:33:106:0.038:2	./.	./.	./.	./.	./.
chr12	3389601	rs66501720	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,11:32:24:0.458:2	0/1:8,12:30:20:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	3391032	rs564247	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:32,28:28:60:0.467:2	0/1:29,16:29:45:0.356:2	0/1:11,4:31:15:0.267:2	./.	./.	./.	./.	0/1:63,50:29:113:0.442:2	./.	0/1:60,50:29:110:0.455:2	./.
chr12	3701464	rs34000611	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,28:30:44:0.636:2	0/1:31,31:31:62:0.500:2	./.	0/1:15,31:31:46:0.674:2	./.	./.	0/1:15,33:31:48:0.688:2	./.
chr12	3724583	rs11062745	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:69,54:29:123:0.439:2	0/1:43,36:29:80:0.456:2	./.	0/1:101,76:29:177:0.429:2	./.	./.	./.	./.	./.	./.	./.
chr12	3749874	rs7138453	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,106:31:179:0.592:2	0/1:56,61:29:117:0.521:2	0/1:0,26:30:26:1.00:2	0/1:2,189:30:191:0.990:2	./.	0/1:84,104:30:189:0.553:2	0/1:4,184:30:188:0.979:2	0/1:2,179:30:181:0.989:2	0/1:90,87:30:177:0.492:2	0/1:105,71:30:176:0.403:2	0/1:0,172:29:172:1.00:2
chr12	3749889	rs76779686	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,68:33:181:0.376:2	0/1:58,57:32:115:0.496:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	3749891	rs142228158	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,65:31:185:0.351:2	./.	./.	./.	./.
chr12	3765493	rs71534241	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,28:31:71:0.394:2	0/1:17,23:31:40:0.575:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	3782647	rs36030417	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:36,22:33:58:0.379:2	0/1:25,18:32:43:0.419:2	./.	./.	./.	./.	./.	0/1:38,29:33:67:0.433:2	0/1:47,22:33:69:0.319:2	./.	0/1:1,49:31:50:0.980:2
chr12	3782701	rs17697920	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:35,14:30:49:0.286:2	0/1:32,15:31:47:0.319:2	./.	./.	./.	./.	./.	0/1:50,30:31:80:0.375:2	0/1:35,34:31:69:0.493:2	./.	0/1:1,58:31:59:0.983:2
chr12	3788145	rs242018	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,53:32:53:1.00:2	0/1:0,35:32:35:1.00:2	./.	0/1:51,51:31:102:0.500:2	./.	./.	0/1:60,47:31:107:0.439:2	0/1:57,36:32:93:0.387:2	0/1:46,40:33:86:0.465:2	./.	./.
chr12	3788188	rs3803135	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:30,25:31:56:0.455:2	0/1:26,22:31:48:0.458:2	./.	./.	./.	./.	./.	0/1:73,49:32:122:0.402:2	0/1:73,51:32:125:0.411:2	./.	./.
chr12	3788222	rs242017	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,68:31:68:1.00:2	0/1:0,43:31:44:1.00:2	./.	0/1:55,43:31:98:0.439:2	./.	./.	0/1:91,38:30:129:0.295:2	0/1:70,47:31:117:0.402:2	0/1:78,57:31:135:0.422:2	./.	./.
chr12	3788260	rs242016	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:25,21:32:46:0.457:2	0/1:14,19:32:33:0.576:2	./.	0/1:34,33:31:67:0.493:2	./.	./.	0/1:51,24:31:75:0.320:2	./.	./.	./.	./.
chr12	3789452	rs17836273	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:35,35:31:70:0.500:2	0/1:17,17:32:34:0.500:2	./.	./.	./.	./.	./.	0/1:62,50:31:112:0.446:2	0/1:33,39:31:72:0.542:2	./.	./.
chr12	3806147	rs9788233	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:10,5:32:15:0.333:2	./.	./.	./.	./.	./.	./.	0/1:7,9:32:16:0.563:2	0/1:6,12:33:18:0.667:2	./.	./.
chr12	3931125	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,3:34:56:0.054:2	./.	./.	./.	./.	./.
chr12	3931307	rs187071509	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	4388084	rs3217805	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,17:32:34:0.500:2	0/1:8,15:32:23:0.652:2	0/1:15,10:31:25:0.400:2	0/1:13,19:31:32:0.594:2	0/1:16,20:31:36:0.556:2	./.	0/1:14,13:32:27:0.481:2	./.
chr12	4459032	rs7309402	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,16:32:52:0.308:2	./.	0/1:41,63:34:104:0.606:2	./.	0/1:62,54:33:116:0.466:2
chr12	4461485	rs7133330	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:6,5:33:11:0.455:2	./.	./.	./.	./.	./.	0/1:8,6:32:14:0.429:2	0/1:8,8:33:16:0.500:2	./.	0/1:9,6:34:15:0.400:2	./.
chr12	4461695	rs75781974	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,12:17:58:0.207:2	./.	./.	0/1:54,18:12:73:0.250:2	0/1:31,16:9:47:0.340:2	0/1:66,25:11:91:0.275:2	0/1:62,22:11:84:0.262:2	0/1:64,19:13:83:0.229:2	./.	0/1:49,9:16:58:0.155:2	0/1:60,12:14:72:0.167:2
chr12	4479549	rs7955866	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,29:30:52:0.558:2	./.	0/1:33,23:30:56:0.411:2	./.	./.	0/1:17,18:30:35:0.514:2	./.
chr12	4553332	rs2241280	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,95:30:153:0.621:2	0/1:0,154:30:154:1.00:2	0/1:77,74:30:151:0.490:2	0/1:93,72:30:165:0.436:2	0/1:74,69:29:143:0.483:2	0/1:98,74:31:172:0.430:2	./.	0/1:1,135:30:136:0.993:2
chr12	4553383	rs2241279	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,55:31:101:0.545:2	0/1:0,80:31:80:1.00:2	0/1:39,45:30:84:0.536:2	0/1:62,40:30:102:0.392:2	0/1:49,39:30:88:0.443:2	0/1:46,44:32:90:0.489:2	./.	0/1:0,96:31:96:1.00:2
chr12	4554413	rs11611403	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,26:31:51:0.510:2	./.	./.
chr12	4554548	rs7358740	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:30:32:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,29:29:29:1.00:2	0/1:0,36:27:36:1.00:2	0/1:0,38:28:38:1.00:2	0/1:0,32:27:32:1.00:2	0/1:0,44:28:44:1.00:2	0/1:0,26:29:26:1.00:2	0/1:0,33:28:33:1.00:2	0/1:0,16:25:16:1.00:2
chr12	4554630	rs11613495	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,9:27:21:0.429:2	./.	./.
chr12	4627414	rs35924298	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,7:31:23:0.304:2	./.	0/1:15,15:31:30:0.500:2	./.	0/1:12,19:31:31:0.613:2	./.	./.	./.
chr12	4662210	rs17850028	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:25,22:34:47:0.468:2	0/1:17,11:32:28:0.393:2	./.	./.	0/1:21,14:33:35:0.400:2	./.	./.	./.	./.	0/1:31,34:33:65:0.523:2	./.
chr12	4702173	rs2240763	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,25:32:58:0.431:2	./.
chr12	4705317	rs17845948	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:38,23:30:61:0.377:2	0/1:25,19:32:44:0.432:2	./.	./.	0/1:33,23:31:56:0.411:2	0/1:25,25:30:50:0.500:2	./.	0/1:39,41:30:80:0.513:2	0/1:31,32:31:63:0.508:2	0/1:31,19:31:50:0.380:2	./.
chr12	4716572	rs997373	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,15:29:44:0.341:2	./.	./.	./.	0/1:20,29:30:49:0.592:2
chr12	4725012	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,93:31:198:0.470:2	./.	./.	./.
chr12	4735737	rs2072358	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:83,96:33:179:0.536:2	0/1:75,80:33:155:0.516:2	0/1:19,15:33:34:0.441:2	./.	0/1:116,83:32:199:0.417:2	0/1:98,93:32:191:0.487:2	./.	0/1:123,74:33:197:0.376:2	0/1:103,93:33:196:0.474:2	0/1:89,98:32:187:0.524:2	./.
chr12	4736495	rs1990312	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:32:36:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,63:32:63:1.00:2
chr12	4736569	rs12366671	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,9:33:27:0.333:2	./.	./.	./.	0/1:21,32:32:53:0.604:2
chr12	4736631	rs11063265	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:29:70:1.00:2	0/1:0,50:29:50:1.00:2	0/1:1,11:26:12:0.917:2	0/1:1,65:28:66:0.985:2	0/1:1,59:28:60:0.983:2	0/1:0,78:29:78:1.00:2	0/1:1,54:28:55:0.982:2	0/1:0,65:29:65:1.00:2	0/1:0,69:28:69:1.00:2	0/1:0,51:28:51:1.00:2	0/1:1,77:27:78:0.987:2
chr12	4736677	rs11063266	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,105:32:105:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,122:32:122:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,102:32:102:1.00:2	0/1:2,76:33:78:0.974:2	0/1:0,96:32:96:1.00:2	0/1:1,106:34:107:0.991:2	0/1:0,96:33:96:1.00:2	0/1:1,131:32:132:0.992:2
chr12	4736690	rs10774251	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,101:32:101:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,126:33:126:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,95:33:95:1.00:2	0/1:2,73:32:75:0.973:2	0/1:0,100:32:100:1.00:2	0/1:0,111:34:112:1.00:2	0/1:0,91:33:91:1.00:2	0/1:1,132:33:133:0.992:2
chr12	4736922	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:33:158:0.025:2
chr12	4737042	rs7972737	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:75,64:30:139:0.460:2	0/1:44,34:31:78:0.436:2	0/1:9,8:31:17:0.471:2	0/1:1,163:30:164:0.994:2	0/1:105,90:30:195:0.462:2	0/1:96,80:30:176:0.455:2	0/1:109,86:31:195:0.441:2	0/1:104,90:30:195:0.464:2	0/1:111,78:31:189:0.413:2	0/1:76,77:31:153:0.503:2	0/1:97,97:31:194:0.500:2
chr12	4737318	rs7960207	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:30:56:1.00:2	0/1:0,49:28:49:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,60:29:60:1.00:2	0/1:0,36:28:36:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,30:28:30:1.00:2	0/1:0,65:29:65:1.00:2	0/1:0,74:30:74:1.00:2	0/1:0,57:29:57:1.00:2	0/1:0,66:28:66:1.00:2
chr12	4737459	rs2072356	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:33:77:1.00:2	0/1:2,46:32:48:0.958:2	0/1:0,10:33:10:1.00:2	0/1:0,64:32:64:1.00:2	0/1:3,54:32:57:0.947:2	0/1:0,85:32:85:1.00:2	0/1:34,23:32:57:0.404:2	0/1:0,76:32:76:1.00:2	0/1:0,107:34:107:1.00:2	0/1:0,43:33:43:1.00:2	0/1:38,37:33:75:0.493:2
chr12	4737715	rs2072355	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,111:32:111:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,145:33:145:1.00:2	0/1:1,118:32:119:0.992:2	0/1:0,156:31:156:1.00:2	0/1:61,49:32:110:0.445:2	0/1:0,123:32:123:1.00:2	0/1:0,149:33:149:1.00:2	0/1:0,100:33:100:1.00:2	0/1:95,90:33:185:0.486:2
chr12	4777656	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,61:33:138:0.442:2	0/1:35,30:32:65:0.462:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	4791451	rs34076756	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,43:32:97:0.443:2	./.	./.	./.	./.	./.	./.
chr12	4830000	rs10849133	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,68:30:69:0.986:2	./.	0/1:33,44:28:77:0.571:2	0/1:34,28:29:62:0.452:2	0/1:0,65:29:65:1.00:2	./.	0/1:43,48:31:91:0.527:2	./.
chr12	4835882	rs2286578	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:25,15:32:40:0.375:2	0/1:17,13:32:30:0.433:2	./.	0/1:0,41:32:41:1.00:2	./.	0/1:30,37:31:67:0.552:2	0/1:23,18:33:41:0.439:2	0/1:1,64:31:65:0.985:2	./.	0/1:14,23:33:37:0.622:2	./.
chr12	4848336	rs34806567	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,19:31:35:0.543:2	./.	./.	./.	./.	./.	./.
chr12	4848415	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,4:34:87:0.046:2	./.	./.	./.	./.	./.	./.	./.
chr12	4873163	rs1468556	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,62:32:150:0.413:2	0/1:41,52:32:93:0.559:2	0/1:17,14:32:31:0.452:2	0/1:1,186:32:187:0.995:2	./.	./.	0/1:108,85:32:193:0.440:2	0/1:0,173:32:173:1.00:2	./.	0/1:75,59:32:134:0.440:2	./.
chr12	4919267	rs758534	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:32:10:0.300:2	./.	./.	./.	0/1:0,9:31:9:1.00:2	0/1:0,10:32:10:1.00:2	./.	./.
chr12	4920782	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:33:55:0.073:2
chr12	4921228	rs2239503	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,73:33:73:1.00:2	0/1:39,31:31:70:0.443:2	./.
chr12	4921301	rs2239504	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,140:32:140:1.00:2	0/1:69,60:32:129:0.465:2	./.
chr12	4921689	rs2239505	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,14:31:23:0.609:2	./.	0/1:1,36:31:37:0.973:2	./.	./.	0/1:22,14:29:36:0.389:2	0/1:2,49:30:51:0.961:2
chr12	4922030	rs3319	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,183:33:185:0.989:2	0/1:104,92:33:196:0.469:2	./.
chr12	4922590	rs41276718	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,26:32:42:0.619:2	./.	./.	./.	./.
chr12	4922734	rs7303721	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,26:33:26:1.00:2	0/1:5,10:32:15:0.667:2	./.
chr12	4923049	rs7310372	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,42:33:42:1.00:2	0/1:22,16:33:38:0.421:2	./.
chr12	4923346	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,4:31:113:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr12	4923364	rs56748976	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,92:33:93:0.989:2	./.	./.
chr12	4923528	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:34:44:0.091:2	./.	./.
chr12	4923697	rs2058205	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,23:31:71:0.324:2	0/1:15,7:28:22:0.318:2	./.	0/1:18,11:32:29:0.379:2	./.	./.	./.	0/1:62,26:31:88:0.295:2
chr12	4923753	rs11615432	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:29,22:29:51:0.431:2	0/1:16,19:30:35:0.543:2	./.	./.	0/1:19,18:29:37:0.486:2	0/1:38,32:30:70:0.457:2	./.	./.	./.	./.	./.
chr12	5020919	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:32:58:0.069:2
chr12	5021228	rs1048500	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,31:32:67:0.463:2	0/1:18,12:32:30:0.400:2	./.	0/1:1,84:32:85:0.988:2	0/1:2,84:32:86:0.977:2	0/1:0,78:32:78:1.00:2	0/1:47,38:32:85:0.447:2	0/1:47,38:32:86:0.447:2	0/1:40,50:33:90:0.556:2	0/1:30,30:32:61:0.500:2	0/1:36,27:32:63:0.429:2
chr12	5021348	rs2227910	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:37,29:32:66:0.439:2	0/1:25,11:31:36:0.306:2	./.	0/1:1,73:32:74:0.986:2	0/1:0,62:32:62:1.00:2	0/1:0,57:32:57:1.00:2	0/1:46,50:32:96:0.521:2	0/1:45,36:33:81:0.444:2	0/1:29,32:33:61:0.525:2	0/1:37,33:32:71:0.471:2	0/1:35,40:33:75:0.533:2
chr12	5021955	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:33:91:0.044:2	./.	./.	./.
chr12	5021984	rs4766309	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,20:33:49:0.408:2	0/1:8,13:32:21:0.619:2	./.	0/1:0,50:32:50:1.00:2	0/1:1,49:32:50:0.980:2	0/1:0,60:32:60:1.00:2	0/1:26,20:32:46:0.435:2	0/1:38,33:32:71:0.465:2	0/1:23,28:33:51:0.549:2	0/1:28,21:33:49:0.429:2	0/1:36,32:33:68:0.471:2
chr12	5022041	rs4766310	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,14:33:23:0.609:2	0/1:3,6:33:9:0.667:2	./.	0/1:0,20:33:20:1.00:2	0/1:0,23:32:23:1.00:2	0/1:1,24:32:25:0.960:2	0/1:16,10:32:26:0.385:2	0/1:12,13:32:25:0.520:2	0/1:16,13:34:29:0.448:2	0/1:23,7:32:30:0.233:2	0/1:25,14:32:39:0.359:2
chr12	5022159	rs116918891	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,30:33:65:0.462:2	./.	./.	./.	./.	./.	./.	./.
chr12	5022260	rs142908193	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,24:33:56:0.429:2
chr12	5022438	rs4766311	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:38,29:32:67:0.433:2	0/1:28,21:32:49:0.429:2	./.	0/1:2,59:31:61:0.967:2	0/1:1,37:32:38:0.974:2	0/1:0,60:32:60:1.00:2	0/1:35,21:32:56:0.375:2	0/1:31,31:32:62:0.500:2	0/1:38,27:32:65:0.415:2	0/1:25,19:33:44:0.432:2	0/1:44,41:32:85:0.482:2
chr12	5022450	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,3:33:57:0.053:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	5023713	rs7974459	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,26:33:50:0.520:2	0/1:19,30:33:49:0.612:2	./.	0/1:0,60:33:60:1.00:2	0/1:0,54:32:54:1.00:2	0/1:1,59:32:60:0.983:2	0/1:37,22:32:59:0.373:2	0/1:40,30:32:71:0.429:2	0/1:38,31:34:69:0.449:2	0/1:20,33:32:55:0.623:2	0/1:33,32:33:65:0.492:2
chr12	5023959	rs7974559	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:85,39:31:124:0.315:2	0/1:28,25:31:53:0.472:2	./.	0/1:2,114:31:116:0.983:2	0/1:2,95:31:97:0.979:2	0/1:0,126:30:126:1.00:2	0/1:86,45:32:131:0.344:2	0/1:70,85:31:155:0.548:2	0/1:76,51:31:127:0.402:2	0/1:44,39:32:83:0.470:2	0/1:60,47:32:107:0.439:2
chr12	5024206	rs73050551	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,59:30:168:0.351:2	./.	0/1:96,78:29:174:0.448:2	./.	./.	./.	./.	./.
chr12	5025094	rs10849174	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:81,61:32:142:0.430:2	0/1:52,51:32:103:0.495:2	./.	0/1:0,189:32:189:1.00:2	0/1:2,170:32:173:0.988:2	0/1:0,179:32:179:1.00:2	0/1:82,86:32:168:0.512:2	0/1:80,111:32:191:0.581:2	0/1:81,102:33:183:0.557:2	0/1:72,72:33:145:0.500:2	0/1:98,89:32:188:0.476:2
chr12	5025516	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,3:33:42:0.071:2	./.	./.	./.	./.	./.	./.
chr12	5025756	rs73050554	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,60:31:163:0.368:2	./.	./.	./.
chr12	5026266	rs61907267	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,30:30:56:0.536:2	./.	./.	./.	0/1:41,47:30:88:0.534:2
chr12	5026287	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:33:52:0.077:2	./.	./.	./.	./.
chr12	5154462	rs2359641	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,100:29:103:0.971:2	0/1:0,65:29:65:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,127:28:127:1.00:2	0/1:2,152:27:154:0.987:2	0/1:0,116:28:116:1.00:2	0/1:0,126:28:126:1.00:2	0/1:0,138:28:138:1.00:2	0/1:1,105:29:106:0.991:2	0/1:2,99:27:102:0.980:2	0/1:3,76:27:79:0.962:2
chr12	5155624	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:34:147:0.027:2
chr12	5155663	rs1056468	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,5:31:12:0.417:2	0/1:54,59:31:113:0.522:2	./.	./.	0/1:41,58:30:99:0.586:2	0/1:3,106:30:109:0.972:2	0/1:2,129:31:131:0.985:2	0/1:64,83:30:148:0.565:2	./.
chr12	5603632	rs6332	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,5:32:7:0.714:2	0/1:3,4:32:7:0.571:2	./.	./.	0/1:1,12:31:13:0.923:2	0/1:11,5:31:16:0.313:2	./.	./.	0/1:5,6:33:11:0.545:2	0/1:0,10:30:10:1.00:2	0/1:7,5:30:12:0.417:2
chr12	5603935	rs10849277	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:28,17:32:45:0.378:2	0/1:13,12:32:25:0.480:2	0/1:0,4:32:4:1.00:2	./.	0/1:19,22:33:41:0.537:2	./.	./.	./.	./.	./.	./.
chr12	5674754	rs2277398	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:19,14:32:33:0.424:2	0/1:7,6:32:13:0.462:2	./.	./.	./.	./.	0/1:1,10:32:11:0.909:2	./.	0/1:0,24:33:24:1.00:2	0/1:8,10:32:18:0.556:2	0/1:0,43:32:44:1.00:2
chr12	5708722	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:31:167:0.024:2	./.
chr12	5756980	rs12825437	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,14:33:24:0.583:2	0/1:7,11:32:18:0.611:2	0/1:0,2:31:2:1.00:2	0/1:8,20:32:28:0.714:2	0/1:14,4:32:18:0.222:2	0/1:16,11:32:27:0.407:2	./.	./.	0/1:24,11:31:35:0.314:2	./.	./.
chr12	5841733	rs1860961	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,35:31:110:0.318:2	./.	./.	0/1:107,85:32:192:0.443:2	./.	./.	./.
chr12	5936910	rs11608829	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,27:32:35:0.771:2	./.
chr12	6030301	rs3741901	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,40:31:72:0.556:2	0/1:28,31:31:59:0.525:2
chr12	6030302	rs3741902	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:34:7:0.429:2	./.	./.	./.	./.	./.	0/1:46,30:32:77:0.395:2	./.	0/1:33,27:30:60:0.450:2
chr12	6030405	rs3741903	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:29:7:0.429:2	./.	./.	./.	./.	./.	0/1:55,39:28:94:0.415:2	./.	0/1:32,21:29:53:0.396:2
chr12	6030437	rs3741904	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,21:28:75:0.280:2
chr12	6061069	rs2270152	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,47:34:84:0.560:2	./.	0/1:44,41:33:85:0.482:2
chr12	6061559	rs7962217	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,36:32:78:0.462:2
chr12	6078429	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,41:32:70:0.586:2
chr12	6085358	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:132,4:31:136:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr12	6091000	rs216867	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:30:47:1.00:2	0/1:0,40:29:40:1.00:2	0/1:0,9:31:9:1.00:2	0/1:50,47:30:98:0.485:2	0/1:0,136:29:136:1.00:2	0/1:0,82:29:82:1.00:2	0/1:1,131:29:132:0.992:2	0/1:72,77:29:149:0.517:2	0/1:0,106:30:106:1.00:2	0/1:0,84:29:84:1.00:2	0/1:0,85:29:86:1.00:2
chr12	6094784	rs1053523	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,33:29:78:0.423:2	./.	./.	./.	0/1:34,36:30:70:0.514:2	./.	./.
chr12	6103094	rs34230288	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,29:30:49:0.592:2	0/1:41,31:31:72:0.431:2
chr12	6103175	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:29:80:0.050:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	6105387	rs216902	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,28:30:67:0.418:2	0/1:15,16:30:32:0.516:2	0/1:0,7:31:7:1.00:2	0/1:43,36:30:79:0.456:2	0/1:34,35:30:69:0.507:2	0/1:0,57:30:57:1.00:2	0/1:67,50:30:117:0.427:2	./.	./.	./.	0/1:26,38:30:64:0.594:2
chr12	6120878	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,5:33:185:0.027:2
chr12	6127833	rs1800386	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,28:31:48:0.583:2	./.	./.	./.
chr12	6127891	rs1800385	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,13:30:24:0.542:2	./.	./.	./.	./.	./.	./.	./.
chr12	6127919	rs1800384	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:34:11:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr12	6127943	rs216310	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,7:29:24:0.292:2	0/1:8,8:29:16:0.500:2	./.	0/1:0,9:29:9:1.00:2	0/1:35,8:27:43:0.186:2	0/1:16,10:27:26:0.385:2	0/1:34,17:30:51:0.333:2	0/1:0,26:28:26:1.00:2	0/1:24,6:28:30:0.200:2	./.	0/1:19,10:27:29:0.345:2
chr12	6128170	rs1800383	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,15:33:28:0.536:2	./.	0/1:21,12:33:33:0.364:2	./.	./.	./.	./.
chr12	6128443	rs216311	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,31:28:60:0.525:2	0/1:17,12:30:29:0.414:2	0/1:3,6:28:9:0.667:2	0/1:1,93:29:94:0.989:2	0/1:45,29:29:74:0.392:2	0/1:36,43:30:80:0.544:2	0/1:43,42:29:86:0.494:2	0/1:1,90:30:91:0.989:2	0/1:37,29:32:67:0.439:2	0/1:27,16:30:43:0.372:2	0/1:0,55:27:55:1.00:2
chr12	6132030	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,23:30:57:0.411:2
chr12	6132945	.	G	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:127,12:20:139:0.086:2	./.	./.	0/1:131,21:17:152:0.138:2	0/1:151,14:15:165:0.085:2	0/1:145,13:19:158:0.082:2	0/1:144,27:18:171:0.158:2	0/1:154,16:18:170:0.094:2	0/1:138,10:19:148:0.068:2	0/1:123,12:23:135:0.089:2	0/1:117,20:22:137:0.146:2
chr12	6132949	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:123,10:16:133:0.075:2	./.	./.	./.	0/1:151,11:18:162:0.068:2	./.	./.	./.
chr12	6138595	rs1800380	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:32,22:33:54:0.407:2	0/1:14,12:31:26:0.462:2	./.	./.	0/1:42,40:31:82:0.488:2	0/1:49,27:31:76:0.355:2	./.	./.	0/1:44,32:32:76:0.421:2	0/1:40,31:31:71:0.437:2	./.
chr12	6138597	rs370984712	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,27:32:74:0.365:2	./.	./.	./.	./.	./.
chr12	6140659	rs33978901	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,50:33:107:0.467:2	0/1:60,60:33:120:0.500:2
chr12	6143984	rs216321	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:29:74:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,12:25:12:1.00:2	0/1:0,92:29:92:1.00:2	0/1:1,126:28:127:0.992:2	0/1:0,104:28:104:1.00:2	0/1:68,76:29:144:0.528:2	0/1:1,109:29:110:0.991:2	0/1:0,85:29:85:1.00:2	0/1:1,71:29:72:0.986:2	0/1:0,86:28:86:1.00:2
chr12	6153514	rs1063857	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,11:30:14:0.786:2	0/1:66,47:28:113:0.416:2	0/1:87,60:29:147:0.408:2	0/1:61,48:29:109:0.440:2	./.	./.	0/1:44,45:30:89:0.506:2	./.	./.
chr12	6153534	rs1063856	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,11:33:17:0.647:2	0/1:65,49:32:114:0.430:2	0/1:103,62:31:165:0.376:2	0/1:59,54:31:113:0.478:2	./.	./.	0/1:49,49:33:98:0.500:2	./.	./.
chr12	6167118	rs35365059	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,16:32:53:0.308:2	./.	./.	./.	./.	./.	./.	./.
chr12	6167196	rs1800379	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:28:7:1.00:2	0/1:0,34:30:34:1.00:2	0/1:17,4:26:22:0.190:2	0/1:24,12:30:36:0.333:2	./.	./.	0/1:17,13:32:30:0.433:2	./.	./.
chr12	6172202	rs1800378	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,17:30:40:0.425:2	0/1:14,9:28:23:0.391:2	./.	0/1:28,24:29:52:0.462:2	0/1:57,40:29:97:0.412:2	0/1:32,23:28:55:0.418:2	0/1:43,33:29:76:0.434:2	0/1:47,29:29:76:0.382:2	0/1:1,57:30:58:0.983:2	0/1:0,34:28:34:1.00:2	0/1:0,36:29:36:1.00:2
chr12	6173433	rs1800377	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,61:30:156:0.394:2	./.	./.	./.	./.	./.	./.	./.
chr12	6174414	rs1800376	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,29:33:68:0.426:2	./.	./.	0/1:34,23:32:57:0.404:2	./.	./.	./.	./.
chr12	6174423	rs1800375	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,28:32:61:0.459:2	./.	./.	0/1:33,23:33:56:0.411:2	./.	./.	./.	./.
chr12	6182828	rs1800387	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,42:32:117:0.359:2	./.	./.	./.	./.
chr12	6230437	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,4:30:108:0.037:2	./.	./.	./.	./.	./.	./.	./.
chr12	6347006	rs181150196	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:33:18:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	6421495	rs740842	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,26:31:50:0.520:2	0/1:21,13:31:34:0.382:2	./.	0/1:43,41:30:84:0.488:2	0/1:24,30:29:54:0.556:2	0/1:0,80:29:80:1.00:2	0/1:1,83:30:84:0.988:2	./.	0/1:52,32:30:84:0.381:2	0/1:0,35:30:35:1.00:2	0/1:0,67:31:67:1.00:2
chr12	6421502	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:29:86:0.047:2	./.	./.	./.	./.	./.
chr12	6424188	rs35564399	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,14:28:48:0.292:2	0/1:13,6:28:19:0.316:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	6427052	rs1468603	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,29:31:64:0.453:2	0/1:17,13:30:30:0.433:2	0/1:0,8:29:8:1.00:2	0/1:53,33:29:86:0.384:2	0/1:60,65:30:125:0.520:2	0/1:2,87:29:89:0.978:2	0/1:2,114:30:116:0.983:2	./.	0/1:49,29:31:78:0.372:2	0/1:2,64:31:66:0.970:2	0/1:1,58:30:59:0.983:2
chr12	6437050	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,4:31:14:0.286:2	./.	./.	./.
chr12	6438994	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,19:12:99:0.192:2	./.	./.	./.	./.
chr12	6439470	rs12426675	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,37:33:60:0.617:2	0/1:48,3:34:51:0.059:2	./.	./.	0/1:32,51:33:83:0.614:2	./.	./.	./.
chr12	6440009	rs1800693	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:11,4:34:15:0.267:2	./.	0/1:16,22:33:38:0.579:2	0/1:8,18:33:26:0.692:2	0/1:20,19:33:39:0.487:2	0/1:2,44:32:46:0.957:2	./.	./.	./.	0/1:14,17:32:31:0.548:2
chr12	6450945	rs767455	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,32:32:60:0.533:2	0/1:18,11:30:29:0.379:2	0/1:9,8:31:17:0.471:2	0/1:64,44:31:108:0.407:2	0/1:107,42:31:149:0.282:2	0/1:88,39:32:127:0.307:2	0/1:6,77:31:83:0.928:2	./.	./.	./.	0/1:31,36:31:67:0.537:2
chr12	6457062	rs2228576	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,13:29:31:0.419:2	0/1:3,9:29:12:0.750:2	./.	0/1:0,30:30:30:1.00:2	0/1:0,12:30:12:1.00:2	0/1:18,16:30:34:0.471:2	0/1:0,8:29:8:1.00:2	0/1:11,6:31:17:0.353:2	./.	0/1:11,13:31:24:0.542:2	0/1:9,15:30:24:0.625:2
chr12	6458342	rs3764873	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,45:32:86:0.523:2	./.	./.	./.	./.	./.	./.	./.
chr12	6464581	rs11542844	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,43:31:92:0.467:2	./.	./.	./.
chr12	6472752	rs55797039	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,8:31:15:0.533:2	./.	./.	./.	./.
chr12	6472753	rs55859427	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,8:30:15:0.533:2	./.	./.	./.	./.
chr12	6483581	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:153,4:32:157:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr12	6495275	rs2364480	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,18:32:41:0.439:2	0/1:18,8:32:26:0.308:2	0/1:0,7:31:7:1.00:2	0/1:33,28:31:61:0.459:2	./.	0/1:0,69:32:69:1.00:2	0/1:0,91:32:91:1.00:2	0/1:57,35:32:92:0.380:2	0/1:40,32:34:72:0.444:2	0/1:0,54:32:54:1.00:2	0/1:0,54:33:54:1.00:2
chr12	6554628	rs25680	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,33:30:62:0.532:2	0/1:2,45:31:47:0.957:2	0/1:31,34:31:65:0.523:2	./.	./.	./.	0/1:33,11:32:44:0.250:2
chr12	6560473	rs2532502	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,93:28:94:1.00:2	0/1:0,70:29:70:1.00:2	0/1:11,6:31:17:0.353:2	0/1:0,184:29:184:1.00:2	0/1:0,185:29:185:1.00:2	0/1:0,167:29:167:1.00:2	0/1:0,181:29:181:1.00:2	0/1:95,91:29:186:0.489:2	0/1:0,175:30:175:1.00:2	0/1:0,121:29:121:1.00:2	0/1:0,148:29:148:1.00:2
chr12	6562285	rs2041384	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,39:30:83:0.470:2	./.	./.	0/1:55,58:30:113:0.513:2	./.	./.	0/1:41,17:28:58:0.293:2	0/1:24,34:31:58:0.586:2
chr12	6562293	rs2041385	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,40:30:78:0.513:2	./.	./.	0/1:58,57:30:118:0.496:2	./.	./.	0/1:45,18:29:63:0.286:2	0/1:27,36:30:64:0.571:2
chr12	6562753	rs2532501	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:29,4:29:33:0.121:2	./.	0/1:0,69:29:69:1.00:2	0/1:41,36:29:77:0.468:2	0/1:1,50:29:51:0.980:2	0/1:1,66:30:67:0.985:2	0/1:40,46:29:86:0.535:2	0/1:42,42:30:84:0.500:2	0/1:0,51:29:51:1.00:2	0/1:53,35:29:88:0.398:2
chr12	6562768	rs7295376	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,28:29:76:0.373:2	./.	./.	./.	./.	./.	./.
chr12	6562810	rs2532500	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,49:29:49:1.00:2	0/1:41,24:29:65:0.369:2	0/1:1,49:28:50:0.980:2	0/1:0,53:30:53:1.00:2	0/1:34,38:29:72:0.528:2	0/1:27,30:30:57:0.526:2	0/1:0,33:28:33:1.00:2	0/1:49,24:30:73:0.329:2
chr12	6562823	rs2041387	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,13:29:48:0.271:2	./.	./.	0/1:31,15:31:46:0.326:2	./.	./.	0/1:0,27:30:27:1.00:2	0/1:46,20:32:67:0.303:2
chr12	6562836	rs2041388	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,9:29:32:0.281:2	./.	./.	0/1:28,11:29:39:0.282:2	./.	0/1:39,3:32:42:0.071:2	0/1:11,12:31:23:0.522:2	0/1:44,18:30:62:0.290:2
chr12	6567907	rs1045546	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,52:32:106:0.491:2	./.	./.	./.
chr12	6568037	rs138882385	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,17:28:39:0.436:2
chr12	6572048	rs1045452	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,77:33:77:1.00:2	0/1:54,58:32:112:0.518:2	0/1:0,115:32:115:1.00:2	0/1:0,99:32:99:1.00:2	0/1:61,62:32:123:0.504:2	0/1:61,50:33:111:0.450:2	0/1:0,77:33:77:1.00:2	0/1:43,40:33:83:0.482:2
chr12	6575044	rs2072375	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,38:31:76:0.500:2	./.	./.	0/1:64,30:31:94:0.319:2	./.	./.	0/1:0,61:31:61:1.00:2	0/1:51,34:32:85:0.400:2
chr12	6575064	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:32:116:0.034:2	./.	./.	./.	./.
chr12	6604325	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:195,4:32:199:0.020:2	./.	./.	./.	./.	./.	./.
chr12	6618871	rs7309414	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,7:32:28:0.250:2	./.	0/1:0,25:30:25:1.00:2	0/1:10,9:31:19:0.474:2	./.	0/1:28,9:32:37:0.243:2	./.	./.
chr12	6619284	rs714774	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:32:68:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,19:33:19:1.00:2	0/1:64,33:32:97:0.340:2	0/1:0,42:32:42:1.00:2	0/1:1,53:33:54:0.981:2	0/1:58,22:33:80:0.275:2	0/1:0,55:32:55:1.00:2	0/1:0,102:32:102:1.00:2	0/1:61,32:32:93:0.344:2	0/1:66,55:33:121:0.455:2
chr12	6631169	rs917634	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:31:39:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,7:31:7:1.00:2	0/1:39,20:31:59:0.339:2	0/1:21,20:30:41:0.488:2	0/1:0,40:31:40:1.00:2	0/1:25,27:31:53:0.519:2	0/1:30,16:32:46:0.348:2	0/1:2,47:32:49:0.959:2	./.	0/1:31,30:31:61:0.492:2
chr12	6635274	rs10849482	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,17:31:53:0.321:2	./.	0/1:20,8:33:28:0.286:2	./.
chr12	6637845	rs2072374	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,17:32:17:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,4:33:4:1.00:2	0/1:21,24:31:45:0.533:2	0/1:0,36:32:36:1.00:2	0/1:0,44:33:44:1.00:2	0/1:22,20:31:42:0.476:2	0/1:0,44:33:44:1.00:2	0/1:0,32:32:32:1.00:2	0/1:26,14:32:40:0.350:2	0/1:26,17:32:43:0.395:2
chr12	6637941	rs10849484	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:31:14:0.500:2	./.	./.	./.	./.	0/1:41,41:30:82:0.500:2	./.	0/1:38,31:31:69:0.449:2	./.
chr12	6638116	rs740850	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,59:32:60:0.983:2	0/1:0,56:31:56:1.00:2	0/1:1,5:27:6:0.833:2	./.	0/1:43,32:31:75:0.427:2	./.	./.	0/1:64,41:30:105:0.390:2	0/1:36,48:32:84:0.571:2	./.	0/1:55,46:32:101:0.455:2
chr12	6639088	rs1043262	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,123:32:124:0.992:2	0/1:0,79:32:79:1.00:2	0/1:0,20:33:20:1.00:2	0/1:72,74:33:146:0.507:2	0/1:0,167:32:167:1.00:2	0/1:0,128:32:128:1.00:2	0/1:95,77:33:172:0.448:2	0/1:1,192:32:193:0.995:2	0/1:0,151:33:151:1.00:2	0/1:69,61:32:130:0.469:2	0/1:80,63:33:143:0.441:2
chr12	6639981	rs2240871	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,17:32:39:0.436:2	./.	0/1:0,40:32:40:1.00:2	0/1:30,16:32:46:0.348:2	./.	0/1:25,25:33:50:0.500:2	./.	./.
chr12	6643991	rs1136666	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:34:8:0.375:2	0/1:48,40:33:88:0.455:2	./.	0/1:0,78:32:78:1.00:2	0/1:36,33:32:69:0.478:2	0/1:70,40:32:110:0.364:2	0/1:35,30:34:65:0.462:2	./.	./.
chr12	6646320	rs1065691	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,20:29:36:0.556:2	0/1:12,13:30:25:0.520:2	0/1:0,33:29:33:1.00:2	0/1:31,22:29:53:0.415:2	./.	0/1:9,15:31:24:0.625:2	./.	./.
chr12	6646375	rs138863602	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,19:32:41:0.463:2	./.	./.
chr12	6647109	rs1803621	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,26:28:48:0.542:2	0/1:17,9:29:26:0.346:2	0/1:0,35:28:35:1.00:2	0/1:16,26:29:43:0.619:2	./.	0/1:26,12:31:38:0.316:2	./.	./.
chr12	6649716	rs139792267	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,64:31:108:0.593:2	./.	./.	./.
chr12	6664581	rs142794007	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,19:30:29:0.655:2	./.
chr12	6664671	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:32:5:0.600:2	0/1:0,4:29:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	6666496	rs61731913	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,77:32:156:0.494:2
chr12	6672570	rs114838415	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,10:32:20:0.500:2
chr12	6672928	rs115447939	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,27:32:50:0.540:2
chr12	6690870	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,16:14:153:0.105:2
chr12	6701640	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,4:31:99:0.040:2	./.	./.	./.	./.	./.	./.
chr12	6707526	rs11539543	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,11:32:40:0.275:2	./.
chr12	6709059	rs11539542	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:29:11:0.455:2	./.	./.	./.	./.	./.	./.	0/1:62,73:30:135:0.541:2	./.
chr12	6709757	rs201534121	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,7:16:44:0.159:2	./.
chr12	6711147	rs1639122	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,11:30:17:0.647:2	0/1:0,13:31:13:1.00:2	0/1:0,13:31:13:1.00:2	./.	0/1:4,3:24:7:0.429:2	./.	0/1:7,4:30:11:0.364:2
chr12	6715527	rs2267974	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,24:28:49:0.490:2	./.	0/1:25,6:32:31:0.194:2	./.	./.	./.	./.
chr12	6730566	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:32:56:0.071:2	./.	./.	./.	./.	./.
chr12	6787426	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,27:30:59:0.458:2	./.	./.	./.	./.	./.	./.
chr12	6787622	rs7964510	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,9:32:36:0.250:2	0/1:12,11:32:23:0.478:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	6833852	rs139143169	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,23:32:64:0.359:2	./.	./.
chr12	6839913	rs2286730	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,49:31:114:0.430:2	./.	./.	./.	0/1:55,34:33:89:0.382:2	./.	0/1:44,36:31:80:0.450:2
chr12	6840209	rs3168600	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,29:30:29:1.00:2	0/1:0,24:31:24:1.00:2	./.	0/1:1,44:31:45:0.978:2	./.	0/1:30,29:29:59:0.492:2	0/1:0,40:31:40:1.00:2	0/1:40,29:31:69:0.420:2	0/1:41,26:30:67:0.388:2	0/1:32,21:31:53:0.396:2	0/1:41,29:31:70:0.414:2
chr12	6858036	rs75658826	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,21:31:41:0.512:2	./.	./.
chr12	6858126	rs2302371	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,44:31:85:0.518:2	./.	./.	./.	./.	./.	0/1:8,15:31:23:0.652:2
chr12	6884585	rs149434241	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,54:30:125:0.432:2
chr12	6884651	rs199694393	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,12:22:61:0.197:2	./.	0/1:9,3:34:12:0.250:2	0/1:83,26:19:109:0.239:2	0/1:119,35:16:154:0.227:2	0/1:89,27:21:117:0.233:2	0/1:106,47:18:153:0.307:2	0/1:110,42:20:152:0.276:2	0/1:96,28:19:124:0.226:2	0/1:75,20:22:95:0.211:2	0/1:67,21:21:88:0.239:2
chr12	6887020	rs870849	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,20:32:54:0.370:2	0/1:30,20:31:50:0.400:2	./.	0/1:43,44:32:87:0.506:2	0/1:58,30:32:88:0.341:2	0/1:56,29:32:85:0.341:2	0/1:2,89:32:91:0.978:2	0/1:50,47:32:97:0.485:2	0/1:0,107:33:107:1.00:2	0/1:0,52:32:52:1.00:2	0/1:52,47:32:99:0.475:2
chr12	6923462	rs11064416	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,28:32:51:0.549:2
chr12	6924122	rs28917504	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,60:32:160:0.375:2
chr12	6925294	rs11064419	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,18:34:41:0.439:2
chr12	6925313	rs10849525	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,19:32:41:0.463:2
chr12	6925466	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:34:75:0.053:2	./.	./.
chr12	6926363	rs1055141	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,29:32:66:0.439:2	0/1:0,68:32:68:1.00:2	./.	0/1:48,31:33:79:0.392:2	0/1:37,44:33:81:0.543:2	0/1:43,33:33:76:0.434:2	./.	0/1:0,72:32:72:1.00:2
chr12	6928075	rs12821756	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,27:30:53:0.509:2	0/1:20,16:32:36:0.444:2	0/1:3,3:32:6:0.500:2	0/1:36,31:32:67:0.463:2	0/1:0,59:31:59:1.00:2	./.	0/1:33,45:32:78:0.577:2	0/1:40,36:31:76:0.474:2	0/1:36,51:32:87:0.586:2	./.	0/1:0,64:31:64:1.00:2
chr12	6932967	rs2040353	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,47:32:104:0.452:2	./.	./.
chr12	6933223	rs11575110	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,39:32:85:0.459:2	./.	./.
chr12	6933787	rs1051409	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,15:30:24:0.625:2	./.	./.	0/1:9,13:31:22:0.591:2	0/1:17,18:31:35:0.514:2	0/1:16,5:34:21:0.238:2	./.	0/1:15,8:30:23:0.348:2
chr12	6935955	rs35717080	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:16,12:32:29:0.429:2	0/1:9,9:33:18:0.500:2	./.	./.	0/1:12,5:32:17:0.294:2	./.	./.	0/1:15,8:30:23:0.348:2	./.	0/1:15,9:30:24:0.375:2	./.
chr12	6935977	rs11612427	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,2:37:5:0.400:2	./.	0/1:5,12:30:17:0.706:2	0/1:15,10:32:25:0.400:2	0/1:6,7:30:13:0.538:2	./.	0/1:11,7:32:18:0.389:2	0/1:13,8:32:21:0.381:2	./.
chr12	6939850	rs10744716	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,2:34:5:0.400:2	./.	./.	0/1:0,60:32:60:1.00:2	0/1:1,87:32:88:0.989:2	0/1:42,27:31:69:0.391:2	0/1:0,39:32:39:1.00:2	0/1:0,41:33:41:1.00:2	0/1:21,23:32:44:0.523:2
chr12	6939859	rs35359746	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,65:31:65:1.00:2	./.	./.	0/1:23,20:31:43:0.465:2	./.	./.
chr12	6940492	rs61916315	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,20:30:44:0.455:2	./.
chr12	6941021	rs1047771	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:33:7:0.571:2	./.	./.	./.	0/1:3,162:32:165:0.982:2	./.	./.	0/1:49,66:32:115:0.574:2	0/1:58,51:32:109:0.468:2
chr12	6942823	rs4963512	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:22,16:31:38:0.421:2	0/1:12,13:30:25:0.520:2	0/1:0,7:31:7:1.00:2	./.	0/1:38,21:29:59:0.356:2	0/1:0,40:29:40:1.00:2	0/1:0,63:30:63:1.00:2	0/1:24,32:29:56:0.571:2	0/1:0,52:31:52:1.00:2	0/1:0,27:30:27:1.00:2	0/1:22,28:30:50:0.560:2
chr12	6946247	rs1129646	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,15:30:15:1.00:2	0/1:0,2:28:2:1.00:2	./.	0/1:7,6:30:13:0.462:2	0/1:7,4:24:11:0.364:2	0/1:5,12:28:17:0.706:2
chr12	6947196	rs78623250	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,72:31:73:0.986:2	./.	./.	./.	./.	./.
chr12	6948468	rs1129649	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,35:31:36:0.972:2	./.	./.	0/1:13,14:32:27:0.519:2	0/1:14,12:32:26:0.462:2
chr12	6954864	rs5442	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,56:31:131:0.427:2	./.	./.	./.	0/1:85,86:32:171:0.503:2	./.	./.	./.
chr12	6954875	rs5443	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,4:33:89:0.045:2	./.	./.	./.	./.	0/1:62,70:32:132:0.530:2	0/1:99,95:32:194:0.490:2	0/1:94,83:32:178:0.469:2	0/1:0,137:33:138:1.00:2	0/1:42,64:33:106:0.604:2	0/1:48,51:32:99:0.515:2
chr12	6961405	rs192268986	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:31:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	6965194	rs2226955	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,78:31:170:0.459:2	0/1:85,66:32:151:0.437:2	0/1:100,74:32:174:0.425:2	0/1:0,151:33:151:1.00:2	0/1:99,62:32:161:0.385:2	0/1:126,66:32:192:0.344:2
chr12	6965928	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,21:29:42:0.500:2	./.
chr12	6976688	rs1800200	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,12:32:50:0.240:2	./.	./.
chr12	6978532	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:31:73:0.055:2	./.	./.	./.	./.
chr12	6982162	rs11064437	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,4:31:12:0.333:2	./.	./.
chr12	7016492	rs371255141	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,24:30:81:0.296:2	./.	./.	./.
chr12	7016596	rs140659005	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,45:33:94:0.479:2	./.	./.	./.
chr12	7022085	rs1057077	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,21:32:38:0.553:2	./.	0/1:35,19:32:54:0.352:2	0/1:0,28:33:28:1.00:2	./.	./.
chr12	7023123	rs710415	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,40:32:77:0.519:2	./.	0/1:35,53:32:88:0.602:2	0/1:0,76:33:76:1.00:2	./.	./.
chr12	7028806	rs34021779	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,59:32:137:0.434:2	./.	./.	./.	./.	./.	./.	./.
chr12	7044964	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,6:30:54:0.111:2	./.	./.	./.	./.
chr12	7045885	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,7:30:77:0.091:2	./.
chr12	7045891	rs150855426	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:144,8:32:152:0.053:2	./.	./.	0/1:81,8:33:90:0.090:2	./.	0/1:62,8:32:71:0.114:2	./.
chr12	7045897	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,7:31:52:0.135:2	./.	./.
chr12	7045903	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,6:31:52:0.115:2	./.	./.
chr12	7045906	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:30:45:0.089:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,8:30:55:0.145:2
chr12	7045912	rs144280633	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,6:30:42:0.143:2	0/1:29,3:31:32:0.094:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,8:29:52:0.154:2
chr12	7047143	rs7969685	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:2,4:25:6:0.667:2	0/1:2,3:31:5:0.600:2	./.	0/1:3,4:31:7:0.571:2	./.	0/1:1,2:33:3:0.667:2	0/1:0,8:30:8:1.00:2	./.	./.	./.	./.
chr12	7047964	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,7:32:26:0.269:2	0/1:7,3:31:10:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	7050949	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:33:108:0.037:2
chr12	7053338	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:122,7:22:129:0.054:2	./.	./.	./.	./.	./.	./.	./.
chr12	7055860	rs2301262	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,12:32:22:0.545:2	0/1:3,9:31:12:0.750:2	0/1:0,2:30:2:1.00:2	0/1:14,3:32:17:0.176:2	0/1:0,12:32:12:1.00:2	0/1:0,6:26:6:1.00:2	0/1:0,17:32:17:1.00:2	0/1:22,6:27:28:0.214:2	0/1:0,13:31:13:1.00:2	0/1:0,13:29:13:1.00:2	0/1:0,7:33:8:1.00:2
chr12	7065635	rs2110072	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:33:102:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,20:33:20:1.00:2	0/1:95,73:32:168:0.435:2	0/1:0,168:32:168:1.00:2	0/1:0,144:32:145:1.00:2	0/1:0,164:33:164:1.00:2	0/1:0,178:33:178:1.00:2	0/1:81,55:32:136:0.404:2	0/1:0,112:32:112:1.00:2	0/1:0,108:32:108:1.00:2
chr12	7077684	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:34:144:0.028:2	./.	./.
chr12	7080212	rs11428482	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:33:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	7090193	rs1984564	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,75:33:134:0.560:2	./.	./.
chr12	7091918	rs3764031	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,59:32:127:0.465:2	./.	./.
chr12	7170336	rs12146727	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,31:33:60:0.517:2	./.	0/1:42,26:32:68:0.382:2
chr12	7171620	rs7965055	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,33:31:74:0.446:2	0/1:64,38:31:102:0.373:2
chr12	7173893	rs117907409	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,55:31:117:0.470:2	./.	./.	./.
chr12	7175047	rs1143664	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,29:31:83:0.349:2	0/1:38,48:31:86:0.558:2
chr12	7188420	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:31:63:0.063:2	./.	./.	./.	./.	./.
chr12	7242039	rs113182443	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,11:30:44:0.250:2
chr12	7242204	rs1126605	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:32:7:0.714:2	./.	0/1:33,22:31:55:0.400:2	0/1:25,33:30:58:0.569:2	./.	0/1:33,45:32:78:0.577:2	0/1:0,66:32:66:1.00:2	./.	./.
chr12	7242299	rs1801046	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,12:30:33:0.364:2	0/1:13,7:30:20:0.350:2	./.	./.	./.	0/1:30,10:31:40:0.250:2	0/1:40,31:30:71:0.437:2	./.	./.	0/1:26,26:31:52:0.500:2	0/1:27,25:30:52:0.481:2
chr12	7242736	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:31:119:0.034:2	./.	./.	./.	./.	./.
chr12	7242740	rs139531404	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,53:32:101:0.530:2	./.	./.	./.
chr12	7244124	rs181434056	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:34:147:0.027:2	./.	./.	./.	./.
chr12	7244956	rs12422724	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,35:32:70:0.500:2	0/1:24,38:32:62:0.613:2	./.	./.	./.	0/1:80,73:30:153:0.477:2	0/1:100,88:30:188:0.468:2	./.	./.	0/1:57,42:30:100:0.424:2	0/1:58,49:31:107:0.458:2
chr12	7244962	rs12426834	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,32:31:67:0.478:2	0/1:25,38:31:63:0.603:2	./.	./.	./.	0/1:73,70:31:143:0.490:2	0/1:96,89:30:185:0.481:2	./.	./.	0/1:54,38:31:92:0.413:2	0/1:53,43:32:96:0.448:2
chr12	7249598	rs3742089	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,94:28:185:0.508:2	./.	./.	./.	0/1:0,112:28:112:1.00:2	./.
chr12	7252597	rs61917913	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,21:32:40:0.525:2	./.
chr12	7254669	rs3742088	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,19:31:28:0.679:2	./.
chr12	7277236	rs2290237	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,8:31:15:0.533:2	0/1:9,8:31:17:0.471:2	./.	0/1:10,15:30:25:0.600:2	0/1:18,10:29:28:0.357:2	./.	0/1:19,13:29:32:0.406:2	0/1:22,11:29:33:0.333:2	./.	./.	./.
chr12	7280880	rs7969705	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,104:33:186:0.559:2	./.
chr12	7281317	rs10963	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,77:31:178:0.435:2
chr12	7285685	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,5:32:186:0.027:2	./.	./.	./.	./.
chr12	7287956	rs34933247	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,89:32:195:0.456:2	./.
chr12	7288432	rs7302230	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,46:29:99:0.465:2	./.	./.	./.	./.	./.	./.	./.
chr12	7343499	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:32:158:0.025:2	./.	./.	./.	./.
chr12	7463241	rs7968241	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,15:31:30:0.500:2	0/1:11,12:32:23:0.522:2	0/1:5,4:31:9:0.444:2	0/1:31,11:32:42:0.262:2	0/1:9,24:33:33:0.727:2	0/1:25,14:31:39:0.359:2	0/1:3,47:32:50:0.940:2	0/1:24,22:33:46:0.478:2	./.	./.	0/1:0,37:32:37:1.00:2
chr12	7470759	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:184,4:35:188:0.021:2	./.	./.	./.	./.	./.	./.
chr12	7475081	rs7485773	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:37,40:30:77:0.519:2	0/1:26,15:31:41:0.366:2	./.	0/1:58,33:29:92:0.363:2	./.	./.	./.	./.	./.	./.	./.
chr12	7527124	rs35480970	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,35:27:80:0.438:2	0/1:29,25:28:54:0.463:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	7527486	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:30:121:0.033:2
chr12	7528404	rs150856487	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,60:32:104:0.577:2	./.	./.
chr12	7528471	rs7306824	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,43:32:44:0.977:2	0/1:0,40:32:40:1.00:2	0/1:9,5:32:14:0.357:2	0/1:35,36:32:71:0.507:2	0/1:27,25:30:52:0.481:2	./.	0/1:29,24:31:53:0.453:2	0/1:44,30:30:74:0.405:2	./.	0/1:31,25:31:56:0.446:2	0/1:44,43:32:87:0.494:2
chr12	7548996	rs4072796	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,21:32:41:0.512:2	0/1:7,11:33:18:0.611:2	./.	./.	./.	./.	./.	./.	0/1:23,12:34:35:0.343:2	./.	./.
chr12	7549009	rs4072797	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,18:29:31:0.581:2	0/1:5,5:32:10:0.500:2	./.	./.	./.	./.	./.	./.	0/1:20,10:31:30:0.333:2	./.	./.
chr12	7551022	rs6488268	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,140:31:140:1.00:2	0/1:0,86:31:86:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,122:30:122:1.00:2	0/1:0,160:29:160:1.00:2	0/1:0,146:30:146:1.00:2	0/1:0,116:30:117:1.00:2	0/1:0,180:30:180:1.00:2	0/1:0,148:31:148:1.00:2	0/1:0,135:31:135:1.00:2	0/1:0,150:31:150:1.00:2
chr12	7551050	rs6488269	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,147:32:148:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,19:33:19:1.00:2	0/1:0,108:32:108:1.00:2	0/1:1,154:31:155:0.994:2	0/1:0,136:31:136:1.00:2	0/1:0,135:32:135:1.00:2	0/1:0,188:32:188:1.00:2	0/1:0,150:33:150:1.00:2	./.	0/1:0,139:32:139:1.00:2
chr12	7559158	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:31:67:0.060:2
chr12	7559359	rs77463173	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,42:32:93:0.452:2	0/1:42,30:32:72:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	7585247	rs58195891	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:33:76:1.00:2	0/1:0,44:32:44:1.00:2	0/1:15,5:32:20:0.250:2	0/1:81,51:33:132:0.386:2	0/1:67,47:32:114:0.412:2	./.	0/1:51,60:32:111:0.541:2	0/1:78,69:33:147:0.469:2	0/1:48,48:33:96:0.500:2	0/1:0,77:33:77:1.00:2	0/1:0,122:32:122:1.00:2
chr12	7585971	rs10845159	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,42:28:110:0.382:2	0/1:72,57:29:129:0.442:2	0/1:0,110:28:110:1.00:2	0/1:74,65:30:141:0.468:2	./.	0/1:46,76:30:122:0.623:2	./.	./.
chr12	7585977	rs117072358	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,49:32:98:0.500:2	0/1:25,25:32:50:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,51:32:120:0.425:2
chr12	7632539	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,11:31:41:0.268:2	./.	./.
chr12	7636057	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,5:26:113:0.045:2	./.
chr12	7637769	rs61729512	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,48:32:48:1.00:2	./.	./.	./.	./.	./.	0/1:22,24:31:46:0.522:2	./.
chr12	7637964	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:34:70:0.057:2	./.	./.
chr12	7640589	rs7980201	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,73:33:74:0.986:2	./.	./.	./.	./.	./.	0/1:38,28:33:66:0.424:2	./.
chr12	7649484	rs4883263	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:32:75:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,19:32:19:1.00:2	0/1:1,90:32:91:0.989:2	0/1:61,66:32:127:0.520:2	0/1:0,97:32:97:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,107:32:107:1.00:2	0/1:0,118:33:118:1.00:2	0/1:49,44:32:93:0.473:2	0/1:0,98:32:98:1.00:2
chr12	7649653	rs4883264	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,24:33:50:0.480:2	0/1:19,22:33:41:0.537:2	0/1:3,5:27:8:0.625:2	0/1:1,80:32:81:0.988:2	0/1:63,53:31:116:0.457:2	0/1:0,63:31:63:1.00:2	0/1:0,108:32:108:1.00:2	0/1:64,54:33:118:0.458:2	0/1:47,53:33:100:0.530:2	0/1:42,20:32:62:0.323:2	0/1:43,30:33:73:0.411:2
chr12	7655137	rs3210140	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:27,20:33:47:0.426:2	0/1:20,12:32:32:0.375:2	./.	0/1:0,52:33:52:1.00:2	./.	0/1:32,28:32:60:0.467:2	0/1:0,43:33:43:1.00:2	0/1:47,38:33:85:0.447:2	0/1:38,28:33:66:0.424:2	0/1:34,23:33:57:0.404:2	0/1:39,17:33:56:0.304:2
chr12	7803646	rs10431309	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:35,26:32:61:0.426:2	0/1:10,9:33:19:0.474:2	./.	./.	0/1:27,36:32:63:0.571:2	./.	0/1:52,21:32:73:0.288:2	./.	0/1:38,35:32:73:0.479:2	0/1:35,28:32:63:0.444:2	0/1:52,37:33:89:0.416:2
chr12	7805236	rs2302515	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:32:18:1.00:2	0/1:0,21:32:21:1.00:2	0/1:3,3:32:6:0.500:2	0/1:0,12:32:12:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,20:32:20:1.00:2	0/1:14,10:34:24:0.417:2	0/1:0,20:31:20:1.00:2	0/1:0,29:33:29:1.00:2
chr12	7818444	rs7294364	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:87,88:29:175:0.503:2	0/1:58,41:31:100:0.414:2	0/1:12,21:29:33:0.636:2	./.	0/1:111,78:30:189:0.413:2	./.	./.	./.	0/1:91,85:31:176:0.483:2	./.	0/1:1,182:30:185:0.995:2
chr12	7818495	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,80:33:174:0.460:2
chr12	7842587	rs2302516	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:33:14:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	7842932	rs12819884	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,35:32:76:0.461:2	./.	./.	0/1:5,41:32:46:0.891:2	./.	./.	./.	./.
chr12	7867794	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,3:33:48:0.063:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	7867838	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:32:51:0.078:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	7867847	rs2024320	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:39,27:32:66:0.409:2	0/1:34,17:32:51:0.333:2	0/1:1,8:33:9:0.889:2	./.	0/1:29,23:31:52:0.442:2	0/1:55,29:33:84:0.345:2	./.	./.	./.	./.	0/1:60,37:31:97:0.381:2
chr12	7867894	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,5:31:89:0.056:2	./.	./.	./.	./.	./.
chr12	7867897	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:31:88:0.045:2	./.	./.	./.	./.	./.
chr12	7867958	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:34:162:0.025:2	./.	./.	./.	./.
chr12	7868853	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:87,19:14:106:0.179:2	./.	0/1:3,5:14:8:0.625:2	./.	0/1:41,11:12:52:0.212:2	0/1:59,16:13:75:0.213:2	./.	./.	0/1:75,25:14:100:0.250:2	./.	./.
chr12	7868859	.	A	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,20:20:93:0.215:2	./.	0/1:3,5:13:8:0.625:2	0/1:67,18:15:85:0.212:2	0/1:35,10:18:45:0.222:2	0/1:41,18:16:60:0.305:2	./.	0/1:76,16:13:92:0.174:2	0/1:63,32:13:96:0.337:2	0/1:62,16:12:78:0.205:2	0/1:76,21:13:99:0.216:2
chr12	7869655	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,7:21:133:0.053:2
chr12	7894056	rs73056605	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,75:31:169:0.444:2	./.	0/1:78,93:31:171:0.544:2	0/1:80,80:31:160:0.500:2	./.	./.	./.	0/1:106,79:31:185:0.427:2
chr12	7894080	rs113848396	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,85:32:166:0.512:2	./.	./.
chr12	7894095	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,4:30:113:0.035:2	./.	./.	./.	./.	./.	./.
chr12	7894096	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,4:31:112:0.036:2	./.	./.	./.	./.	./.	./.
chr12	7942354	rs2377097	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:46,3:33:49:0.061:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,3:35:41:0.073:2	./.
chr12	7945559	rs4294629	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:77,53:33:130:0.408:2	0/1:34,46:32:80:0.575:2	./.	0/1:96,51:32:147:0.347:2	0/1:0,66:32:66:1.00:2	0/1:6,129:32:135:0.956:2	0/1:3,108:32:111:0.973:2	0/1:8,140:32:148:0.946:2	0/1:4,109:32:113:0.965:2	0/1:0,130:32:130:1.00:2	0/1:7,165:33:172:0.959:2
chr12	7945576	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:32:137:0.029:2	./.	./.	./.	./.	./.
chr12	7945591	rs201427723	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:32:132:0.030:2	./.	./.	./.	./.	./.
chr12	7945640	rs2889551	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:53,26:31:79:0.329:2	0/1:29,25:30:54:0.463:2	./.	0/1:45,18:30:63:0.286:2	0/1:1,14:28:15:0.933:2	0/1:1,42:29:43:0.977:2	0/1:2,32:30:34:0.941:2	0/1:3,45:29:48:0.938:2	0/1:1,47:30:48:0.979:2	0/1:0,54:30:54:1.00:2	0/1:3,69:31:72:0.958:2
chr12	7945670	rs4354764	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,25:32:74:0.338:2	0/1:29,19:32:48:0.396:2	./.	0/1:33,22:31:55:0.400:2	0/1:3,7:31:10:0.700:2	0/1:4,28:32:32:0.875:2	0/1:3,20:32:23:0.870:2	0/1:4,36:32:40:0.900:2	0/1:3,29:32:32:0.906:2	0/1:3,33:33:36:0.917:2	0/1:5,53:32:58:0.914:2
chr12	7945757	rs4438116	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,94:30:98:0.959:2	0/1:4,77:31:82:0.951:2	0/1:62,43:31:105:0.410:2	0/1:53,51:31:104:0.490:2	0/1:55,41:31:96:0.427:2	0/1:62,51:32:113:0.451:2
chr12	7947304	rs4012939	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:112,42:33:154:0.273:2	0/1:54,33:33:87:0.379:2	./.	0/1:85,47:33:132:0.356:2	0/1:1,105:32:106:0.991:2	0/1:1,126:32:127:0.992:2	0/1:1,116:33:117:0.991:2	0/1:0,124:32:124:1.00:2	0/1:1,119:34:120:0.992:2	0/1:0,126:32:126:1.00:2	0/1:2,122:33:124:0.984:2
chr12	7947325	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,4:34:120:0.033:2	./.	0/1:83,4:30:87:0.046:2	./.	./.	./.	./.	./.
chr12	7947340	rs150847430	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,25:30:69:0.362:2	./.	./.
chr12	7947563	.	G	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:33:11:0.364:2	./.	./.	./.	./.	0/1:1,3:32:4:0.750:2	0/1:1,2:35:3:0.667:2	0/1:2,2:33:4:0.500:2
chr12	7947571	rs4012937	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:7,3:33:10:0.300:2	./.	./.	0/1:8,3:29:11:0.273:2	./.	./.	0/1:2,4:32:6:0.667:2	./.	./.	./.	./.
chr12	7966958	rs10845981	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:25,87:32:112:0.777:2	0/1:11,45:32:56:0.804:2	0/1:0,21:32:21:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	7966975	rs10845982	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:88,18:31:106:0.170:2	0/1:41,11:32:52:0.212:2	./.	0/1:2,43:31:45:0.956:2	0/1:5,35:30:40:0.875:2	./.	./.	0/1:116,22:30:138:0.159:2	./.	0/1:104,19:31:123:0.154:2	0/1:99,15:31:114:0.132:2
chr12	7967071	rs11837392	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,7:33:41:0.171:2	./.	./.
chr12	7967076	rs10845983	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,16:31:46:0.348:2	0/1:12,15:32:27:0.556:2	./.	0/1:20,19:32:39:0.487:2	0/1:2,24:32:26:0.923:2	./.	./.	0/1:31,20:32:51:0.392:2	./.	0/1:25,21:33:46:0.457:2	0/1:37,22:32:59:0.373:2
chr12	7984312	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,5:31:76:0.066:2	./.	./.	./.	./.	./.	./.	./.
chr12	8074055	rs199523896	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:126,48:33:174:0.276:2	0/1:90,31:32:121:0.256:2	./.	0/1:101,85:32:186:0.457:2	0/1:100,94:32:194:0.485:2	./.	./.	0/1:150,46:32:196:0.235:2	./.	0/1:133,36:32:169:0.213:2	0/1:97,49:32:146:0.336:2
chr12	8074072	rs112571065	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,6:33:161:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	8074168	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:84,5:31:89:0.056:2	./.	./.	0/1:41,7:32:48:0.146:2	0/1:32,7:31:39:0.179:2	./.	./.	0/1:55,4:30:59:0.068:2	./.	0/1:39,4:32:43:0.093:2	./.
chr12	8074173	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:78,5:32:83:0.060:2	./.	./.	./.	0/1:29,7:31:36:0.194:2	./.	./.	0/1:52,4:32:56:0.071:2	./.	./.	./.
chr12	8074192	rs25684	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:3,48:33:51:0.941:2	0/1:2,28:32:31:0.933:2	0/1:0,6:32:6:1.00:2	./.	0/1:19,9:33:28:0.321:2	0/1:1,30:32:31:0.968:2	./.	./.	0/1:22,23:33:45:0.511:2	./.	./.
chr12	8074227	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,3:33:20:0.150:2	./.	./.
chr12	8082367	rs17847967	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:166,14:32:180:0.078:2	0/1:129,15:30:144:0.104:2	0/1:38,3:32:41:0.073:2	0/1:184,13:32:197:0.066:2	0/1:110,23:31:133:0.173:2	0/1:189,9:31:198:0.045:2	0/1:193,7:32:200:0.035:2	0/1:185,15:31:200:0.075:2	0/1:185,12:32:197:0.061:2	0/1:182,14:32:196:0.071:2	0/1:176,18:31:194:0.093:2
chr12	8083982	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:33:173:0.023:2	./.	./.	./.	./.
chr12	8197424	rs35642012	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,24:27:56:0.429:2	0/1:12,10:28:22:0.455:2	./.	0/1:43,24:27:67:0.358:2	0/1:22,25:29:47:0.532:2	./.	./.	./.	0/1:0,57:28:57:1.00:2	./.	./.
chr12	8211784	rs56136109	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,46:32:105:0.438:2	./.	./.	./.	0/1:99,52:33:151:0.344:2	./.	./.
chr12	8278181	rs2024301	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,25:32:47:0.532:2	0/1:13,15:32:28:0.536:2	0/1:0,9:32:9:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,60:32:60:1.00:2	0/1:1,71:32:72:0.986:2	0/1:53,37:33:91:0.411:2	0/1:45,49:32:94:0.521:2	0/1:56,48:32:104:0.462:2
chr12	8289415	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:33:50:0.080:2	./.	./.	./.	./.
chr12	8289453	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,25:32:66:0.379:2	./.	./.	./.
chr12	8290801	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:31:173:0.023:2	./.	./.	./.
chr12	8328507	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,5:32:200:0.025:2	./.	./.
chr12	8329652	rs10743251	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,56:28:111:0.505:2	0/1:34,40:29:74:0.541:2	0/1:2,14:30:16:0.875:2	0/1:77,53:29:130:0.408:2	0/1:5,49:28:54:0.907:2	0/1:58,56:29:115:0.491:2	0/1:7,51:29:58:0.879:2	0/1:8,79:28:87:0.908:2	0/1:83,36:29:119:0.303:2	0/1:64,34:29:98:0.347:2	0/1:11,110:28:121:0.909:2
chr12	8329676	rs10743252	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,47:31:106:0.443:2	0/1:34,40:31:74:0.541:2	0/1:0,18:30:18:1.00:2	0/1:71,60:31:131:0.458:2	0/1:0,67:31:67:1.00:2	0/1:59,68:31:127:0.535:2	0/1:0,65:31:65:1.00:2	0/1:2,127:31:129:0.984:2	0/1:64,59:32:123:0.480:2	0/1:56,46:31:102:0.451:2	0/1:0,139:32:139:1.00:2
chr12	8329700	rs10743253	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,69:32:141:0.489:2	0/1:47,47:33:94:0.500:2	0/1:0,29:33:29:1.00:2	0/1:76,83:33:159:0.522:2	0/1:2,102:33:104:0.981:2	0/1:71,76:32:147:0.517:2	0/1:2,91:33:93:0.978:2	0/1:4,160:32:164:0.976:2	0/1:81,86:33:167:0.515:2	0/1:75,77:33:152:0.507:2	0/1:0,169:32:169:1.00:2
chr12	8329833	rs11043758	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,53:31:125:0.424:2	0/1:50,19:31:70:0.275:2	0/1:0,20:30:20:1.00:2	0/1:96,54:30:150:0.360:2	0/1:0,46:29:46:1.00:2	0/1:78,49:30:127:0.386:2	0/1:2,50:30:52:0.962:2	0/1:7,103:30:111:0.936:2	0/1:94,61:31:155:0.394:2	0/1:85,47:31:132:0.356:2	0/1:0,90:30:92:1.00:2
chr12	8330007	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:32:142:0.028:2	./.	./.	./.
chr12	8330033	.	A	G,C	.	PASS	AC=5,1;AF=0.278,0.056;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9-variant10-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	0/1:33:172:0.023:2	0/1:33:94:0.043:2	./.	0/2:32:171:0.030:2	./.	0/1:32:161:0.031:2	./.	./.	0/1:33:162:0.049:2	./.	0/1:34:189:0.048:2
chr12	8330041	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:32:156:0.026:2	./.	./.	./.	./.	0/1:183,6:29:189:0.032:2
chr12	8330056	.	A	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:155,4:34:159:0.025:2	./.	./.	./.	./.	./.	./.	./.	0/1:148,7:33:155:0.045:2	0/1:151,5:29:156:0.032:2	0/1:163,10:32:173:0.058:2
chr12	8330128	rs61922210	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:31,18:29:49:0.367:2	0/1:23,13:27:36:0.361:2	./.	./.	0/1:12,6:29:18:0.333:2	./.	./.	0/1:21,19:28:40:0.475:2	0/1:31,16:29:47:0.340:2	./.	./.
chr12	8374646	rs138275793	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,8:30:14:0.571:2	./.	./.	./.	./.	./.
chr12	8374770	rs9668474	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:30:69:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,12:28:12:1.00:2	0/1:0,98:29:98:1.00:2	0/1:0,46:28:46:1.00:2	0/1:0,66:28:66:1.00:2	0/1:0,49:29:49:1.00:2	0/1:0,125:29:125:1.00:2	0/1:2,41:30:43:0.953:2	0/1:0,35:28:35:1.00:2	0/1:0,56:29:56:1.00:2
chr12	8374812	rs17855656	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,30:31:41:0.750:2	./.	./.	./.	0/1:13,12:30:25:0.480:2	0/1:23,16:32:39:0.410:2
chr12	8374814	rs200251031	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,7:20:59:0.119:2	./.	./.	./.
chr12	8374929	rs182789716	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,7:32:14:0.500:2	./.	./.	./.	./.	./.
chr12	8375048	rs17857270	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,4:28:34:0.118:2	./.
chr12	8375052	rs17857269	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:32:35:0.114:2	./.
chr12	8375112	rs9668582	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,25:31:119:0.210:2	./.	0/1:50,15:30:65:0.231:2	./.	./.	./.	0/1:34,21:32:55:0.382:2	0/1:54,14:32:68:0.206:2
chr12	8376068	rs76702974	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,10:29:43:0.233:2	./.	./.	./.
chr12	8376110	rs9738115	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:30:19:1.00:2	0/1:0,38:28:38:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,12:28:12:1.00:2	0/1:19,23:28:42:0.548:2	0/1:0,23:30:23:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,41:30:41:1.00:2
chr12	8377330	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:30:8:0.375:2	./.	./.	./.	./.	./.	./.	./.
chr12	8377415	rs200454993	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,4:32:21:0.190:2	./.	./.	./.	./.	./.	./.	./.
chr12	8608730	rs118084065	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,17:35:48:0.354:2	0/1:17,13:32:30:0.433:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	8610580	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:31:85:0.047:2	./.
chr12	8666296	rs73250517	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,3:29:5:0.600:2	./.	./.	./.	./.	./.	./.
chr12	8666378	rs11045985	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,3:33:15:0.200:2	0/1:18,7:31:25:0.280:2	./.	0/1:4,6:33:10:0.600:2	0/1:20,6:31:26:0.231:2
chr12	8667897	rs4304840	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:180,4:32:185:0.022:2	./.	0/1:29,11:29:40:0.275:2	./.	./.	./.	0/1:96,83:30:179:0.464:2	0/1:96,80:29:177:0.455:2	./.	0/1:108,85:29:193:0.440:2	0/1:97,84:30:181:0.464:2
chr12	8693333	rs4620776	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:89,73:33:162:0.451:2	0/1:66,38:32:104:0.365:2	0/1:0,18:31:18:1.00:2	0/1:0,138:32:138:1.00:2	0/1:0,95:31:95:1.00:2	0/1:89,80:31:169:0.473:2	0/1:0,91:32:91:1.00:2	0/1:99,56:31:155:0.361:2	0/1:0,167:33:167:1.00:2	0/1:95,64:32:159:0.403:2	0/1:116,76:32:192:0.396:2
chr12	8693418	rs11834597	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,46:32:94:0.495:2	0/1:42,30:31:72:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	8757481	rs2028373	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,15:32:15:1.00:2	0/1:0,12:31:12:1.00:2	./.	0/1:1,26:31:27:0.963:2	0/1:16,4:26:20:0.200:2	0/1:17,13:31:30:0.433:2	0/1:7,7:33:14:0.500:2	./.	0/1:0,38:32:38:1.00:2	0/1:20,16:31:36:0.444:2	0/1:17,12:33:29:0.414:2
chr12	8808006	rs11046589	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,39:31:80:0.488:2	0/1:21,31:31:52:0.596:2	0/1:2,4:31:6:0.667:2	0/1:31,48:32:79:0.608:2	0/1:32,23:31:55:0.418:2	0/1:28,39:31:67:0.582:2	0/1:28,25:31:53:0.472:2	0/1:0,82:31:82:1.00:2	0/1:61,32:33:93:0.344:2	0/1:33,38:32:71:0.535:2	./.
chr12	8813498	rs12833793	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,25:31:50:0.521:2	./.	0/1:31,19:32:50:0.380:2	./.	./.	./.
chr12	8926011	rs2969089	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,157:32:157:1.00:2	0/1:0,114:32:114:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,178:32:178:1.00:2	0/1:0,191:32:191:1.00:2	0/1:0,181:32:181:1.00:2	0/1:1,190:32:191:0.995:2	0/1:0,193:32:193:1.00:2	0/1:0,192:32:192:1.00:2	0/1:1,174:32:175:0.994:2	0/1:0,182:31:182:1.00:2
chr12	8926015	rs2302488	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,82:31:183:0.448:2	./.	./.	./.	./.	./.	./.	./.
chr12	8926119	rs56225306	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,4:30:20:0.200:2	./.	0/1:70,64:30:134:0.478:2	./.	./.	./.	./.	./.	./.
chr12	8975873	rs79149293	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,15:32:39:0.385:2	./.	./.	./.	./.	./.	./.
chr12	8975901	rs17792974	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,26:33:52:0.500:2	./.	0/1:42,30:34:72:0.417:2	./.	./.
chr12	8990937	rs61921916	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,57:31:149:0.385:2	./.	./.	./.	./.
chr12	8991813	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:33:46:0.087:2	./.
chr12	8995756	rs7308106	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:17,15:33:32:0.469:2	0/1:5,9:32:14:0.643:2	./.	./.	./.	./.	0/1:24,20:31:44:0.455:2	./.	./.	./.	./.
chr12	9004512	rs1860927	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,49:31:101:0.485:2	0/1:31,20:32:51:0.392:2	0/1:12,7:31:19:0.368:2	0/1:0,119:31:119:1.00:2	0/1:67,49:31:116:0.422:2	0/1:0,163:30:163:1.00:2	0/1:0,106:31:106:1.00:2	0/1:0,140:31:140:1.00:2	0/1:0,152:32:152:1.00:2	0/1:71,61:31:132:0.462:2	0/1:0,135:30:135:1.00:2
chr12	9004892	rs1860926	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:32:38:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,77:33:77:1.00:2	0/1:1,69:32:70:0.986:2	0/1:0,88:33:88:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,78:32:78:1.00:2
chr12	9009779	rs56179521	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,9:31:13:0.692:2	./.	0/1:41,59:32:100:0.590:2	./.	./.	./.	./.	./.	./.
chr12	9009820	rs1558526	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,82:30:152:0.539:2	./.	./.	0/1:104,66:29:170:0.388:2	./.	./.	./.	0/1:74,72:31:146:0.493:2
chr12	9010671	rs11612600	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,5:29:14:0.357:2	0/1:38,40:31:78:0.513:2	0/1:27,25:30:52:0.481:2	./.	0/1:46,22:30:68:0.324:2	./.	./.	./.	0/1:24,38:31:62:0.613:2
chr12	9013755	rs1860967	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,35:30:65:0.538:2	0/1:0,83:31:83:1.00:2	0/1:44,25:31:69:0.362:2	0/1:1,89:31:90:0.989:2	0/1:41,34:33:75:0.453:2	./.	0/1:60,51:32:111:0.459:2
chr12	9016456	rs73040625	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:2,64:32:67:0.970:2	0/1:0,35:32:35:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:48,36:31:84:0.429:2	./.
chr12	9016573	rs10219561	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:29:53:1.00:2	0/1:0,40:29:40:1.00:2	0/1:0,3:28:3:1.00:2	0/1:0,52:28:52:1.00:2	0/1:0,63:28:63:1.00:2	0/1:0,64:27:64:1.00:2	0/1:1,70:28:71:0.986:2	0/1:0,63:29:63:1.00:2	0/1:0,59:30:60:1.00:2	0/1:0,44:30:44:1.00:2	0/1:0,74:30:75:1.00:2
chr12	9020489	rs7308811	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,6:30:13:0.462:2	0/1:0,114:29:114:1.00:2	0/1:39,56:28:95:0.589:2	0/1:0,102:29:102:1.00:2	0/1:0,88:29:88:1.00:2	0/1:0,127:29:127:1.00:2	0/1:0,118:29:118:1.00:2	0/1:55,43:29:98:0.439:2	0/1:0,94:28:94:1.00:2
chr12	9020563	rs61749073	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:33:9:0.444:2	./.	0/1:96,53:32:149:0.356:2	./.	./.	./.	./.	./.	./.
chr12	9020912	rs1476910	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:33:85:1.00:2	0/1:1,59:32:60:0.983:2	0/1:22,5:34:27:0.185:2	0/1:1,79:33:80:0.988:2	0/1:39,31:32:70:0.443:2	0/1:0,96:32:96:1.00:2	0/1:1,82:32:83:0.988:2	0/1:1,96:33:97:0.990:2	0/1:0,122:32:122:1.00:2	0/1:1,85:32:86:0.988:2	0/1:73,60:32:133:0.451:2
chr12	9070284	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:33:87:0.046:2	./.
chr12	9070366	rs4883198	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:31:92:1.00:2	0/1:0,48:31:48:1.00:2	0/1:8,5:30:13:0.385:2	0/1:75,55:30:130:0.423:2	0/1:98,80:30:178:0.449:2	0/1:2,155:30:157:0.987:2	0/1:2,172:30:174:0.989:2	0/1:0,181:30:181:1.00:2	0/1:103,82:31:185:0.443:2	0/1:0,107:31:108:1.00:2	0/1:0,151:31:151:1.00:2
chr12	9074259	rs1805741	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,88:31:98:0.898:2	0/1:7,62:32:69:0.899:2	0/1:20,13:31:33:0.394:2	0/1:73,64:31:137:0.467:2	0/1:86,73:31:159:0.459:2	0/1:13,115:31:128:0.898:2	0/1:32,145:31:177:0.819:2	0/1:27,140:31:167:0.838:2	0/1:88,62:32:150:0.413:2	0/1:9,105:32:114:0.921:2	0/1:17,88:31:105:0.838:2
chr12	9074268	rs142470174	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,59:30:145:0.407:2	./.	./.
chr12	9083336	rs1805777	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:31:34:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,6:28:6:1.00:2	0/1:2,24:29:26:0.923:2	0/1:2,9:33:11:0.818:2	0/1:5,23:32:30:0.821:2	0/1:2,9:32:11:0.818:2	0/1:18,21:32:39:0.538:2	0/1:7,22:33:29:0.759:2	0/1:1,11:33:12:0.917:2	0/1:4,23:33:27:0.852:2
chr12	9083351	rs201152545	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,15:31:57:0.263:2	0/1:16,5:32:21:0.238:2	./.	./.	./.	./.	./.	./.	0/1:50,6:34:56:0.107:2	./.	0/1:41,10:31:51:0.196:2
chr12	9085788	rs201210657	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:132,61:32:193:0.316:2	./.	./.	./.	./.	./.	./.
chr12	9086553	rs1805773	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:82,49:33:131:0.374:2	0/1:43,42:33:85:0.494:2	./.	./.	./.	./.	0/1:108,82:33:190:0.432:2	./.	0/1:111,55:33:166:0.331:2	0/1:13,129:33:142:0.908:2	./.
chr12	9086898	rs1049925	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,13:31:39:0.342:2	0/1:15,9:32:24:0.375:2	0/1:0,4:32:4:1.00:2	0/1:25,22:33:48:0.468:2	0/1:17,24:31:41:0.585:2	0/1:0,36:32:36:1.00:2	0/1:16,13:32:29:0.448:2	0/1:13,14:33:27:0.519:2	./.	0/1:42,3:34:46:0.067:2	0/1:6,25:33:32:0.806:2
chr12	9090528	rs62625019	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:83,37:32:120:0.308:2	0/1:45,18:32:63:0.286:2	./.	./.	./.	./.	0/1:112,26:32:138:0.188:2	./.	0/1:77,40:33:117:0.342:2	./.	./.
chr12	9090530	rs199586201	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,4:29:17:0.235:2	./.	./.	0/1:92,65:30:157:0.414:2	0/1:115,26:30:141:0.184:2	0/1:106,67:30:173:0.387:2	./.	0/1:95,10:30:105:0.095:2	0/1:124,16:32:141:0.114:2
chr12	9091914	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:181,7:31:188:0.037:2	0/1:169,6:32:175:0.034:2	./.	./.	./.	./.	./.	./.	0/1:191,4:34:195:0.021:2	./.	0/1:183,9:34:192:0.047:2
chr12	9091944	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,44:32:186:0.237:2	./.	0/1:188,9:33:197:0.046:2	./.	0/1:179,15:33:194:0.077:2	./.
chr12	9142297	rs1805723	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,19:29:43:0.442:2	0/1:8,4:26:12:0.333:2	./.	0/1:25,21:29:46:0.457:2	0/1:12,21:27:33:0.636:2	0/1:0,46:28:46:1.00:2	0/1:0,33:28:33:1.00:2	0/1:26,16:29:42:0.381:2	./.	./.	0/1:1,49:29:50:0.980:2
chr12	9161648	rs3026251	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,62:29:129:0.488:2	0/1:42,22:28:64:0.344:2	0/1:4,6:29:10:0.600:2	0/1:72,65:29:137:0.474:2	./.	0/1:54,69:28:124:0.561:2	0/1:61,50:28:111:0.450:2	./.	./.	0/1:71,69:28:140:0.493:2	./.
chr12	9220474	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:33:35:0.114:2	./.
chr12	9225397	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:128,4:31:132:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr12	9229951	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,6:27:87:0.069:2	./.	./.	./.	./.	./.
chr12	9230355	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:33:133:0.030:2	./.
chr12	9232268	rs669	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,59:33:115:0.513:2	0/1:34,24:32:58:0.414:2	0/1:11,9:32:20:0.450:2	0/1:70,75:32:145:0.517:2	0/1:52,49:32:101:0.485:2	0/1:123,4:31:127:0.031:2	./.	./.	0/1:0,164:32:164:1.00:2	./.	0/1:80,68:32:148:0.459:2
chr12	9243017	rs55761427	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,34:31:67:0.507:2	./.
chr12	9243846	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:84,4:29:88:0.045:2	./.	./.	./.	0/1:93,4:31:97:0.041:2	./.	0/1:67,9:30:76:0.118:2	0/1:113,17:29:130:0.131:2	./.	0/1:78,7:31:85:0.082:2	0/1:99,5:32:104:0.048:2
chr12	9243921	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,4:34:104:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr12	9243947	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,6:32:85:0.071:2	./.	./.	./.	./.	./.	0/1:74,5:33:79:0.063:2	./.
chr12	9244021	.	C	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,4:30:77:0.052:2	./.	0/1:66,6:32:72:0.083:2	./.	./.	0/1:39,6:30:45:0.133:2	./.
chr12	9248233	rs226405	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:29:102:1.00:2	0/1:0,62:28:62:1.00:2	0/1:1,8:29:9:0.889:2	0/1:0,106:29:106:1.00:2	0/1:0,92:29:92:1.00:2	0/1:0,126:29:126:1.00:2	0/1:2,92:30:94:0.979:2	0/1:0,115:29:115:1.00:2	0/1:0,115:30:115:1.00:2	0/1:0,73:29:73:1.00:2	0/1:1,121:29:122:0.992:2
chr12	9254241	rs2228222	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,42:31:82:0.512:2	./.
chr12	9265016	rs56202499	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,67:31:172:0.390:2	./.	./.	./.	./.
chr12	9303296	rs10842971	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,21:32:35:0.600:2	0/1:11,18:32:29:0.621:2	./.	0/1:21,27:30:48:0.563:2	0/1:14,16:31:30:0.533:2	./.	./.	./.	0/1:0,61:32:61:1.00:2	./.	0/1:42,34:32:76:0.447:2
chr12	9305473	rs10771357	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,45:32:92:0.489:2	0/1:35,32:32:67:0.478:2	0/1:0,19:33:19:1.00:2	0/1:75,55:33:130:0.423:2	0/1:81,43:33:124:0.347:2	0/1:1,112:32:113:0.991:2	0/1:2,127:33:129:0.984:2	0/1:1,158:33:159:0.994:2	./.	0/1:49,66:33:115:0.574:2	0/1:98,74:34:172:0.430:2
chr12	9307373	rs2377741	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,78:32:78:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,13:33:13:1.00:2	0/1:1,117:32:118:0.992:2	0/1:0,99:32:99:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,115:33:115:1.00:2	0/1:2,119:32:121:0.983:2	0/1:0,102:32:102:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,89:32:89:1.00:2
chr12	9309792	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:186,4:34:190:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr12	9312951	rs57006764	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,49:31:87:0.563:2	./.	./.	./.	./.
chr12	9315209	rs10771381	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:34:4:0.750:2	./.	0/1:22,25:32:47:0.532:2	0/1:36,25:32:61:0.410:2	0/1:0,65:33:65:1.00:2	0/1:0,76:33:76:1.00:2	./.	0/1:33,25:33:58:0.431:2	0/1:49,40:33:89:0.449:2
chr12	9316773	rs3213831	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,19:32:19:1.00:2	0/1:156,4:33:160:0.025:2	0/1:105,45:32:150:0.300:2	0/1:80,67:32:147:0.456:2	0/1:1,127:33:129:0.992:2	0/1:3,159:33:162:0.981:2	./.	0/1:78,53:32:131:0.405:2	0/1:80,67:33:147:0.456:2
chr12	9317784	rs2277413	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,76:30:155:0.490:2	./.	./.	./.	./.	./.	0/1:79,62:31:142:0.440:2	./.
chr12	9317794	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:32:152:0.026:2	./.	./.	./.
chr12	9317885	rs2277412	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:31:9:1.00:2	./.	0/1:68,25:31:93:0.269:2	0/1:54,44:32:98:0.449:2	0/1:4,51:32:55:0.927:2	0/1:1,51:32:52:0.981:2	./.	0/1:34,23:33:57:0.404:2	0/1:40,26:33:66:0.394:2
chr12	9334571	rs3741849	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,31:32:89:0.348:2	./.	./.	./.	./.	./.	./.	./.
chr12	9345273	rs10771407	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:31:80:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,6:30:6:1.00:2	0/1:55,65:30:120:0.542:2	0/1:0,87:30:87:1.00:2	0/1:0,97:30:97:1.00:2	0/1:0,90:31:90:1.00:2	0/1:2,142:30:144:0.986:2	0/1:0,95:31:95:1.00:2	0/1:0,86:30:86:1.00:2	0/1:0,87:31:87:1.00:2
chr12	9346792	rs12230214	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,62:33:127:0.488:2	0/1:58,26:32:84:0.310:2	./.	./.	./.	./.	./.	./.	0/1:95,79:34:174:0.454:2	0/1:78,48:33:126:0.381:2	./.
chr12	9356533	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,4:34:57:0.070:2	./.	./.	./.	./.	./.	./.	./.
chr12	9392148	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:187,7:30:194:0.036:2	./.	./.	./.	./.	./.	./.	./.
chr12	9571304	rs200117929	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,54:31:192:0.281:2	./.	./.	./.
chr12	9571392	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:144,9:29:153:0.059:2	./.	./.	./.	./.	./.	./.
chr12	9571420	rs74062844	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,116:31:116:1.00:2	0/1:0,61:30:61:1.00:2	./.	0/1:65,71:31:136:0.522:2	./.	./.	./.	./.	./.	./.	./.
chr12	9571467	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,6:29:80:0.076:2	./.	./.	./.	./.	./.	./.	./.
chr12	9571742	rs74062845	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,71:33:71:1.00:2	0/1:1,50:32:51:0.980:2	./.	0/1:64,53:32:117:0.453:2	./.	./.	./.	./.	./.	./.	./.
chr12	9571764	rs117821635	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.
chr12	9572801	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,3:32:25:0.120:2
chr12	9572819	rs10843740	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,14:30:44:0.318:2	0/1:37,21:31:58:0.362:2	0/1:38,35:30:73:0.479:2	0/1:26,20:32:46:0.435:2	0/1:19,19:32:38:0.500:2	0/1:7,35:31:42:0.833:2
chr12	9573130	rs7358608	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,46:29:156:0.295:2	0/1:96,34:31:130:0.262:2	0/1:113,84:31:198:0.426:2	0/1:105,40:32:145:0.276:2	0/1:62,41:31:103:0.398:2	0/1:59,75:30:134:0.560:2
chr12	9573223	rs4763936	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:152,23:31:175:0.131:2	0/1:106,18:30:124:0.145:2	0/1:2,21:30:23:0.913:2	0/1:97,72:31:170:0.426:2	0/1:28,125:31:153:0.817:2	0/1:38,115:31:154:0.752:2	0/1:121,31:30:152:0.204:2	0/1:130,20:31:150:0.133:2	./.	0/1:83,84:31:167:0.503:2	0/1:133,30:30:163:0.184:2
chr12	9573224	rs7358609	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,35:32:151:0.232:2	0/1:52,94:32:146:0.644:2	0/1:44,104:32:148:0.703:2	0/1:53,101:33:154:0.656:2	0/1:83,81:32:164:0.494:2	0/1:59,97:32:157:0.622:2
chr12	9574002	rs10771709	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:31:48:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,63:31:63:1.00:2	0/1:1,81:31:82:0.988:2	0/1:0,69:31:69:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,72:31:72:1.00:2
chr12	9574020	rs200847155	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:50,3:33:53:0.057:2	0/1:18,4:33:22:0.182:2	./.	./.	./.	./.	./.	0/1:77,7:32:84:0.083:2	0/1:66,5:34:71:0.070:2	./.	./.
chr12	9574042	rs7298124	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,26:28:53:0.500:2	0/1:37,27:29:64:0.422:2	0/1:4,67:28:71:0.944:2	0/1:36,33:30:69:0.478:2	0/1:34,25:28:59:0.424:2	0/1:1,52:30:53:0.981:2
chr12	9574480	rs7132464	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:32:102:1.00:2	0/1:0,60:33:60:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,118:33:119:1.00:2	0/1:0,126:32:126:1.00:2	0/1:2,124:32:126:0.984:2	0/1:2,138:32:140:0.986:2	0/1:1,124:33:125:0.992:2	0/1:0,118:32:118:1.00:2	0/1:0,104:33:104:1.00:2	0/1:0,125:32:125:1.00:2
chr12	9578140	rs188907648	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:31:129:0.031:2	./.	./.
chr12	9578146	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:34:115:0.035:2	./.	./.
chr12	9578178	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:32:145:0.028:2	./.	./.	./.	./.
chr12	9578197	rs76671194	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,70:31:89:0.787:2	0/1:10,57:31:67:0.851:2	0/1:4,9:31:13:0.692:2	0/1:21,68:31:89:0.764:2	0/1:21,90:31:111:0.811:2	0/1:44,88:31:132:0.667:2	0/1:92,52:31:144:0.361:2	0/1:27,99:31:126:0.786:2	0/1:37,34:32:71:0.479:2	0/1:23,71:31:94:0.755:2	0/1:11,60:31:71:0.845:2
chr12	9578672	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:181,13:27:194:0.067:2	0/1:164,16:26:180:0.089:2	0/1:28,6:29:34:0.176:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	9578696	rs61914674	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,52:31:187:0.278:2	./.	./.	./.
chr12	9580280	rs201256560	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,139:32:143:0.972:2	0/1:1,85:32:87:0.988:2	./.	0/1:150,36:32:186:0.194:2	0/1:167,8:32:175:0.046:2	./.	./.	./.	0/1:192,5:33:197:0.025:2	./.	0/1:178,8:32:186:0.043:2
chr12	9580293	rs200454162	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:141,8:30:149:0.054:2	./.	./.	0/1:158,32:30:190:0.168:2	0/1:162,6:29:168:0.036:2	./.	0/1:132,20:30:152:0.132:2	./.	0/1:149,47:31:196:0.240:2	./.	0/1:184,7:31:191:0.037:2
chr12	9580303	rs201526991	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:140,10:34:150:0.067:2	0/1:84,4:32:89:0.045:2	./.	0/1:166,31:33:197:0.157:2	0/1:156,4:33:160:0.025:2	./.	0/1:128,21:33:149:0.141:2	./.	0/1:148,43:33:191:0.225:2	./.	0/1:180,9:33:189:0.048:2
chr12	9580392	rs368360579	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:156,32:31:188:0.170:2	0/1:113,20:31:134:0.150:2	0/1:20,12:30:32:0.375:2	0/1:162,32:31:195:0.165:2	0/1:116,20:29:137:0.147:2	0/1:145,50:30:195:0.256:2	0/1:130,25:30:155:0.161:2	0/1:160,36:30:196:0.184:2	./.	0/1:163,30:31:193:0.155:2	0/1:161,31:30:193:0.161:2
chr12	9580395	rs61914681	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:95,94:28:189:0.497:2	0/1:53,78:29:131:0.595:2	0/1:17,17:30:34:0.500:2	0/1:63,134:29:197:0.680:2	0/1:59,68:29:127:0.535:2	0/1:93,106:29:199:0.533:2	0/1:52,98:28:150:0.653:2	0/1:91,105:28:196:0.536:2	0/1:52,139:29:191:0.728:2	0/1:83,109:28:192:0.568:2	0/1:82,111:29:195:0.575:2
chr12	9580403	rs61914682	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,95:32:183:0.519:2	0/1:61,84:32:145:0.579:2	0/1:22,20:32:42:0.476:2	0/1:103,90:31:193:0.466:2	0/1:68,70:31:138:0.507:2	0/1:93,104:31:197:0.528:2	0/1:89,80:32:169:0.473:2	0/1:92,103:32:195:0.528:2	0/1:97,99:32:196:0.505:2	0/1:86,109:32:195:0.559:2	0/1:82,114:31:196:0.582:2
chr12	9581765	rs138534619	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,143:31:192:0.745:2	0/1:67,97:32:164:0.591:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	9581791	rs4763566	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:31,37:30:68:0.544:2	0/1:140,55:33:195:0.282:2	0/1:93,100:30:193:0.518:2	0/1:142,42:31:184:0.228:2	./.	./.	./.	0/1:143,45:31:188:0.239:2	./.
chr12	9581798	rs11050925	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,36:31:192:0.188:2	./.	0/1:147,35:31:182:0.192:2	./.	./.
chr12	9583205	rs61340441	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,23:32:23:1.00:2	0/1:0,10:32:10:1.00:2	./.	0/1:12,14:31:26:0.538:2	./.	./.	./.	./.	./.	./.	./.
chr12	9583216	rs3864916	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,19:32:19:1.00:2	0/1:0,10:32:10:1.00:2	./.	0/1:0,22:32:22:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,8:33:8:1.00:2
chr12	9583221	rs3864915	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,16:30:16:1.00:2	0/1:0,10:31:10:1.00:2	./.	0/1:0,26:30:26:1.00:2	0/1:1,17:31:18:0.944:2	0/1:0,25:30:25:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,8:30:8:1.00:2
chr12	9583283	rs2429896	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:32:48:0.083:2	./.	./.	./.	./.
chr12	9583286	rs2429895	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:54,6:25:60:0.100:2	./.	./.	./.	./.	./.	0/1:45,5:26:50:0.100:2	./.	0/1:53,4:26:57:0.070:2	./.	./.
chr12	9583300	rs3891016	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:29:59:0.068:2	./.	./.	./.	./.
chr12	9583324	rs4012577	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,35:30:79:0.443:2	0/1:17,40:31:57:0.702:2	0/1:15,115:30:130:0.885:2	0/1:8,53:31:61:0.869:2	0/1:36,53:32:89:0.596:2	0/1:8,61:31:69:0.884:2
chr12	9584964	.	G	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:48,37:31:85:0.435:2	0/1:28,15:32:43:0.349:2	./.	0/1:57,14:28:71:0.197:2	./.	./.	./.	./.	./.	./.	./.
chr12	9584991	rs2553132	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:103,15:32:118:0.127:2	0/1:45,19:31:64:0.297:2	0/1:5,8:32:13:0.615:2	0/1:60,36:31:96:0.375:2	0/1:53,23:32:76:0.303:2	0/1:34,34:32:68:0.500:2	0/1:44,38:32:82:0.463:2	0/1:62,63:32:125:0.504:2	0/1:42,46:32:88:0.523:2	0/1:29,27:32:56:0.482:2	0/1:29,38:32:67:0.567:2
chr12	9585009	rs376159526	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:114,7:31:121:0.058:2	0/1:62,12:32:74:0.162:2	./.	./.	0/1:94,12:32:106:0.113:2	./.	./.	0/1:121,23:33:144:0.160:2	0/1:102,15:34:117:0.128:2	./.	0/1:70,12:33:82:0.146:2
chr12	9585079	rs369815872	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,11:30:20:0.550:2	0/1:159,29:30:189:0.154:2	0/1:140,53:30:193:0.275:2	0/1:172,23:30:195:0.118:2	./.	./.	./.	0/1:142,19:31:161:0.118:2	./.
chr12	9585121	rs61914692	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:94,20:31:114:0.175:2	0/1:62,9:32:71:0.127:2	./.	0/1:115,21:30:136:0.154:2	0/1:110,8:30:118:0.068:2	./.	./.	0/1:119,18:31:137:0.131:2	0/1:87,46:31:133:0.346:2	./.	0/1:115,23:31:138:0.167:2
chr12	9585129	rs202030916	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,10:30:16:0.625:2	0/1:104,22:29:126:0.175:2	0/1:70,30:29:100:0.300:2	0/1:111,16:28:127:0.126:2	./.	./.	./.	0/1:89,14:29:103:0.136:2	./.
chr12	9585573	rs71447582	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,46:31:163:0.282:2	./.	0/1:116,36:31:152:0.237:2	./.	./.
chr12	9585578	rs75926916	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,87:31:161:0.540:2	./.
chr12	9585598	rs200479049	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,100:28:101:1.00:2	0/1:0,100:29:100:1.00:2	0/1:0,16:30:16:1.00:2	0/1:2,86:29:88:0.977:2	0/1:2,58:27:60:0.967:2	0/1:0,94:29:94:1.00:2	0/1:2,56:27:58:0.966:2	0/1:3,75:28:78:0.962:2	0/1:0,64:29:64:1.00:2	0/1:0,117:29:117:1.00:2	0/1:2,85:28:87:0.977:2
chr12	9585631	rs75182719	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:116,34:33:150:0.227:2	0/1:99,18:32:117:0.154:2	0/1:6,16:32:22:0.727:2	0/1:87,81:32:168:0.482:2	0/1:42,87:31:129:0.674:2	0/1:100,27:31:127:0.213:2	0/1:89,58:32:147:0.395:2	0/1:162,34:32:196:0.173:2	0/1:59,109:33:168:0.649:2	0/1:114,35:33:149:0.235:2	0/1:155,38:32:193:0.197:2
chr12	9585658	rs200040906	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:136,43:33:179:0.240:2	0/1:96,22:32:118:0.186:2	0/1:16,13:33:29:0.448:2	0/1:110,75:32:185:0.405:2	0/1:55,95:31:151:0.633:2	0/1:129,32:32:161:0.199:2	0/1:105,65:32:170:0.382:2	0/1:155,40:32:196:0.205:2	0/1:66,126:33:193:0.656:2	0/1:134,43:33:177:0.243:2	0/1:156,37:33:193:0.192:2
chr12	9585908	rs201145593	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,17:32:31:0.548:2	./.	0/1:58,129:32:187:0.690:2	0/1:115,79:32:194:0.407:2	0/1:69,115:32:184:0.625:2	0/1:76,110:33:186:0.591:2	0/1:59,126:33:185:0.681:2	0/1:104,85:32:189:0.450:2	0/1:63,112:32:175:0.640:2
chr12	9585919	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,27:32:185:0.146:2	0/1:152,29:33:181:0.160:2	0/1:108,70:32:178:0.393:2	0/1:139,44:32:183:0.240:2	0/1:142,33:32:175:0.189:2	0/1:104,86:31:190:0.453:2
chr12	9586005	rs201987563	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,96:31:144:0.667:2	0/1:33,80:32:113:0.708:2	0/1:11,9:31:20:0.450:2	0/1:57,98:30:155:0.632:2	0/1:45,86:30:131:0.656:2	0/1:111,75:30:186:0.403:2	0/1:51,100:30:151:0.662:2	0/1:73,87:31:160:0.544:2	0/1:2,132:31:134:0.985:2	0/1:95,57:31:152:0.375:2	0/1:61,105:31:166:0.633:2
chr12	9586746	rs201559465	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:150,21:33:171:0.123:2	0/1:157,23:33:180:0.128:2	0/1:55,9:32:64:0.141:2	0/1:157,38:33:195:0.195:2	./.	0/1:172,24:32:196:0.122:2	./.	./.	0/1:147,48:34:195:0.246:2	0/1:146,15:34:161:0.093:2	./.
chr12	9589580	rs12425701	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,91:31:136:0.669:2	./.	./.	0/1:67,87:31:154:0.565:2	./.	0/1:103,72:32:175:0.411:2	./.	./.
chr12	9589621	rs145019589	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,6:32:35:0.171:2	./.	./.	0/1:108,15:31:123:0.122:2	0/1:26,15:28:41:0.366:2	0/1:1,20:31:21:0.952:2	0/1:87,20:28:107:0.187:2	0/1:91,14:31:105:0.133:2	0/1:119,14:32:133:0.105:2	0/1:0,15:31:15:1.00:2	0/1:23,15:28:38:0.395:2
chr12	9589625	rs76590171	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,10:27:23:0.435:2	0/1:79,19:27:98:0.194:2	0/1:86,12:27:98:0.122:2	0/1:111,13:28:125:0.105:2	0/1:9,6:29:15:0.400:2	0/1:19,18:28:37:0.486:2
chr12	9589629	.	A	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,23:28:25:0.920:2	0/1:0,8:29:8:1.00:2	./.	0/1:124,10:26:134:0.075:2	0/1:21,14:30:35:0.400:2	./.	./.	0/1:15,79:28:94:0.840:2	0/1:107,18:31:125:0.144:2	./.	0/1:24,17:29:41:0.415:2
chr12	9589681	rs77571608	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,61:32:122:0.500:2	0/1:3,5:33:8:0.625:2	./.	0/1:4,40:31:45:0.909:2	./.	0/1:3,63:33:66:0.955:2	./.	0/1:2,7:30:9:0.778:2
chr12	9590052	rs149680272	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,4:32:58:0.069:2	./.	0/1:19,50:31:69:0.725:2	0/1:107,81:31:188:0.431:2	0/1:44,138:30:182:0.758:2	0/1:121,75:30:197:0.383:2	./.	./.	./.	0/1:102,90:31:192:0.469:2	./.
chr12	9590774	rs201831474	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,20:31:34:0.588:2	0/1:135,25:31:160:0.156:2	0/1:86,54:31:140:0.386:2	0/1:116,38:30:154:0.247:2	./.	./.	./.	0/1:134,34:31:168:0.202:2	./.
chr12	9590812	rs199826744	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,9:31:23:0.391:2	0/1:62,7:31:69:0.101:2	0/1:28,20:31:48:0.417:2	0/1:72,26:30:98:0.265:2	./.	./.	./.	0/1:66,16:31:82:0.195:2	./.
chr12	9750669	rs1135816	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,12:33:29:0.414:2	0/1:24,15:32:39:0.385:2	0/1:16,8:33:24:0.333:2	0/1:0,34:33:34:1.00:2	0/1:35,19:30:54:0.352:2	./.	0/1:0,37:32:37:1.00:2
chr12	9822387	rs16914640	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:52,30:33:82:0.366:2	0/1:25,24:32:49:0.490:2	0/1:11,3:33:14:0.214:2	./.	./.	0/1:80,71:33:151:0.470:2	./.	./.	0/1:83,61:33:144:0.424:2	0/1:70,40:33:110:0.364:2	0/1:2,111:33:113:0.982:2
chr12	9833524	rs3764022	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:23,24:34:47:0.511:2	0/1:20,11:32:31:0.355:2	./.	./.	0/1:1,26:33:27:0.963:2	./.	0/1:18,19:33:37:0.514:2	0/1:30,16:32:46:0.348:2	./.	0/1:27,22:32:49:0.449:2	./.
chr12	9833628	rs3764021	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,36:32:37:0.973:2	0/1:0,20:32:20:1.00:2	./.	./.	0/1:1,26:32:27:0.963:2	0/1:31,22:31:53:0.415:2	0/1:20,17:32:37:0.459:2	0/1:46,40:32:86:0.465:2	0/1:37,40:33:77:0.519:2	0/1:30,20:32:50:0.400:2	0/1:0,78:32:78:1.00:2
chr12	9906179	rs11052883	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,25:32:60:0.417:2	./.	./.
chr12	9985915	rs2232548	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,18:32:18:1.00:2	./.	./.	./.	./.	./.
chr12	9985942	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,32:33:60:0.533:2
chr12	10015177	rs253146	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,26:33:48:0.542:2	0/1:15,21:32:36:0.583:2	0/1:0,4:33:4:1.00:2	0/1:34,30:33:64:0.469:2	0/1:22,8:32:30:0.267:2	0/1:2,41:32:44:0.953:2	0/1:18,15:33:33:0.455:2	0/1:16,18:33:34:0.529:2	0/1:17,19:34:36:0.528:2	./.	./.
chr12	10066186	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.
chr12	10069302	rs526680	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,109:32:171:0.637:2	0/1:43,49:32:92:0.533:2	0/1:13,17:31:30:0.567:2	0/1:107,89:31:196:0.454:2	0/1:92,81:31:174:0.468:2	0/1:96,102:31:198:0.515:2	0/1:5,189:32:195:0.974:2	0/1:115,82:31:197:0.416:2	0/1:81,117:32:198:0.591:2	0/1:75,85:31:160:0.531:2	0/1:0,192:32:192:1.00:2
chr12	10074776	rs61747889	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,31:27:70:0.443:2	./.	./.	./.
chr12	10131939	rs536947	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,11:31:22:0.500:2	0/1:0,8:32:8:1.00:2	0/1:17,3:31:20:0.150:2	0/1:11,8:33:19:0.421:2	0/1:2,4:32:6:0.667:2	./.
chr12	10137557	rs479499	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,21:33:36:0.583:2	0/1:15,8:32:23:0.348:2	./.	0/1:23,33:33:56:0.589:2	0/1:16,21:32:37:0.568:2	0/1:0,46:32:46:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,66:32:66:1.00:2	0/1:25,36:33:61:0.590:2	0/1:18,36:32:54:0.667:2	./.
chr12	10149851	rs583903	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:32:31:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,49:32:49:1.00:2
chr12	10150920	rs150507224	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:133,5:30:138:0.036:2	./.	./.	./.	./.	./.	./.
chr12	10150961	rs2273987	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:42,37:32:79:0.468:2	0/1:23,14:32:37:0.378:2	./.	./.	0/1:76,63:30:139:0.453:2	0/1:44,46:31:90:0.511:2	./.	0/1:51,72:32:123:0.585:2	./.	./.	./.
chr12	10150974	rs2273986	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,63:32:65:0.969:2	0/1:1,30:31:31:0.968:2	0/1:9,3:31:12:0.250:2	0/1:53,45:32:98:0.459:2	0/1:2,122:31:124:0.984:2	0/1:42,37:33:79:0.468:2	./.	0/1:48,69:32:117:0.590:2	0/1:47,53:33:100:0.530:2	0/1:37,35:31:72:0.486:2	0/1:1,49:32:50:0.980:2
chr12	10151642	rs612593	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:31:36:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,17:30:17:1.00:2	0/1:2,51:30:53:0.962:2	0/1:1,32:30:33:0.970:2	0/1:0,43:30:43:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,68:30:68:1.00:2
chr12	10163375	rs1359082	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:23,18:31:41:0.439:2	0/1:12,8:32:20:0.400:2	./.	./.	0/1:17,12:31:29:0.414:2	./.	./.	./.	0/1:28,23:32:51:0.451:2	0/1:30,23:30:53:0.434:2	0/1:34,19:32:53:0.358:2
chr12	10163379	rs1359083	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:23,21:32:44:0.477:2	0/1:12,8:32:20:0.400:2	./.	./.	0/1:18,14:32:32:0.438:2	./.	./.	./.	0/1:26,24:32:50:0.480:2	0/1:30,22:30:53:0.423:2	0/1:33,18:32:51:0.353:2
chr12	10165469	rs476474	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,131:30:131:1.00:2	0/1:0,80:30:80:1.00:2	0/1:0,25:30:25:1.00:2	0/1:70,68:30:138:0.493:2	0/1:1,151:30:152:0.993:2	0/1:0,129:30:129:1.00:2	0/1:1,138:30:139:0.993:2	0/1:100,58:31:158:0.367:2	0/1:0,133:32:133:1.00:2	0/1:0,114:31:114:1.00:2	0/1:0,132:30:132:1.00:2
chr12	10167277	rs637790	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,121:33:122:1.00:2	0/1:0,70:33:70:1.00:2	0/1:0,17:31:17:1.00:2	0/1:70,46:33:116:0.397:2	0/1:0,114:32:114:1.00:2	0/1:0,110:32:110:1.00:2	0/1:0,87:33:87:1.00:2	0/1:90,78:33:168:0.464:2	0/1:0,154:34:154:1.00:2	0/1:1,78:33:79:0.987:2	0/1:0,128:33:128:1.00:2
chr12	10206925	rs7315231	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,122:31:122:1.00:2	0/1:0,90:30:90:1.00:2	0/1:20,10:30:30:0.333:2	0/1:1,137:31:138:0.993:2	0/1:0,125:30:125:1.00:2	0/1:0,111:30:111:1.00:2	0/1:65,51:31:116:0.440:2	0/1:73,52:30:125:0.416:2	0/1:1,126:31:127:0.992:2	0/1:64,47:31:111:0.423:2	0/1:1,160:31:161:0.994:2
chr12	10213778	rs143589598	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,40:30:65:0.615:2	0/1:25,15:29:40:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	10224073	rs77910243	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,38:30:73:0.521:2	./.	./.	./.
chr12	10251445	rs2306894	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,95:32:97:0.979:2	0/1:0,45:32:45:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,138:32:138:1.00:2	0/1:0,148:32:148:1.00:2	0/1:0,105:32:105:1.00:2	0/1:5,142:32:147:0.966:2	0/1:0,137:32:137:1.00:2	0/1:0,126:33:126:1.00:2	0/1:0,115:32:115:1.00:2	0/1:1,128:32:129:0.992:2
chr12	10271055	rs7959451	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,91:33:91:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,123:32:123:1.00:2	0/1:52,27:32:79:0.342:2	0/1:0,105:32:106:1.00:2	0/1:1,82:32:83:0.988:2	0/1:2,129:32:131:0.985:2	0/1:0,116:33:116:1.00:2	0/1:0,103:32:103:1.00:2	0/1:1,120:33:121:0.992:2
chr12	10271127	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,39:32:104:0.375:2	./.	./.
chr12	10271156	rs374910100	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:33:98:0.041:2	./.	./.	./.
chr12	10271165	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,35:33:87:0.402:2	./.	./.
chr12	10279989	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:32:122:0.033:2	./.	./.	./.	./.	./.
chr12	10312518	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	10313448	rs11053646	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:44,39:33:83:0.470:2	0/1:13,18:32:31:0.581:2	0/1:3,5:31:8:0.625:2	./.	./.	./.	./.	0/1:59,41:33:100:0.410:2	./.	./.	./.
chr12	10339178	rs4764308	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,22:29:41:0.537:2	./.	0/1:27,23:30:50:0.460:2	./.	./.	./.	./.
chr12	10373118	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:141,4:31:146:0.028:2	./.	./.	./.	./.	./.	./.
chr12	10373130	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:143,4:31:147:0.027:2	./.	./.	./.	./.	./.	./.
chr12	10460692	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,5:30:75:0.067:2
chr12	10462052	rs10772256	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:32:81:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,55:33:55:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,85:33:85:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,98:32:98:1.00:2
chr12	10525740	rs1049172	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,39:32:108:0.361:2	0/1:33,32:32:65:0.492:2	0/1:10,3:32:13:0.231:2	0/1:102,65:32:167:0.389:2	0/1:0,74:31:74:1.00:2	0/1:74,67:32:141:0.475:2	0/1:0,98:32:98:1.00:2	0/1:0,121:32:121:1.00:2	0/1:99,67:33:166:0.404:2	./.	0/1:0,125:32:125:1.00:2
chr12	10532111	rs2255353	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,28:33:28:1.00:2	0/1:0,18:32:18:1.00:2	./.	0/1:0,39:32:39:1.00:2	0/1:0,24:31:24:1.00:2	0/1:17,17:31:34:0.500:2	0/1:0,17:32:17:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,61:32:61:1.00:2
chr12	10532326	rs2255336	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,108:34:108:1.00:2	0/1:1,69:32:70:0.986:2	0/1:5,8:33:13:0.615:2	0/1:0,142:33:142:1.00:2	0/1:0,91:32:91:1.00:2	0/1:75,65:32:140:0.464:2	0/1:0,109:32:109:1.00:2	0/1:0,171:32:171:1.00:2	0/1:0,176:34:176:1.00:2	0/1:0,135:33:135:1.00:2	0/1:0,177:33:177:1.00:2
chr12	10541428	rs368876244	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,13:32:18:0.722:2	0/1:6,8:32:14:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	10560333	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:32:151:0.026:2	./.	./.	./.	./.
chr12	10560957	rs2617170	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,28:31:72:0.389:2	0/1:45,22:32:67:0.328:2	0/1:7,5:32:12:0.417:2	0/1:57,43:33:100:0.430:2	0/1:0,62:32:62:1.00:2	0/1:51,31:33:82:0.378:2	0/1:0,84:33:84:1.00:2	0/1:1,108:33:109:0.991:2	0/1:59,35:34:94:0.372:2	./.	0/1:2,132:33:134:0.985:2
chr12	10562025	rs1841957	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,109:32:190:0.574:2	0/1:63,73:32:136:0.537:2	0/1:14,10:30:24:0.417:2	0/1:113,83:33:197:0.423:2	0/1:0,74:32:74:1.00:2	0/1:79,76:32:155:0.490:2	0/1:0,82:32:82:1.00:2	0/1:3,172:32:175:0.983:2	0/1:90,101:34:191:0.529:2	./.	0/1:0,190:33:190:1.00:2
chr12	10562089	rs1841958	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,90:32:168:0.536:2	0/1:63,61:33:124:0.492:2	0/1:14,17:32:32:0.548:2	0/1:76,86:33:162:0.531:2	0/1:0,76:32:76:1.00:2	0/1:81,91:32:172:0.529:2	0/1:0,91:32:91:1.00:2	0/1:1,173:32:174:0.994:2	0/1:81,84:34:165:0.509:2	./.	0/1:0,149:32:150:1.00:2
chr12	10569289	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:32:167:0.024:2	./.	./.	./.	./.	./.
chr12	10569343	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:33:131:0.031:2	./.	./.	./.	./.	./.
chr12	10570965	rs2682495	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,140:33:140:1.00:2	0/1:0,112:33:112:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,172:33:172:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,151:32:151:1.00:2	0/1:0,94:33:94:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,179:34:179:1.00:2	0/1:0,136:33:136:1.00:2	0/1:0,166:33:166:1.00:2
chr12	10571042	rs2741882	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,136:33:152:0.895:2	0/1:9,104:32:113:0.920:2	0/1:2,18:32:20:0.900:2	0/1:24,142:32:166:0.855:2	0/1:26,60:31:86:0.698:2	0/1:13,148:32:161:0.919:2	0/1:36,79:32:115:0.687:2	0/1:35,121:32:156:0.776:2	0/1:24,138:33:163:0.852:2	0/1:23,114:32:137:0.832:2	0/1:14,157:32:171:0.918:2
chr12	10571091	rs2682494	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,85:32:104:0.817:2	0/1:15,55:32:70:0.786:2	0/1:2,9:32:11:0.818:2	0/1:31,74:32:105:0.705:2	0/1:28,39:32:67:0.582:2	0/1:15,82:32:97:0.845:2	0/1:37,44:32:81:0.543:2	0/1:44,83:32:127:0.654:2	0/1:34,71:33:105:0.676:2	0/1:30,81:32:111:0.730:2	0/1:18,79:32:97:0.814:2
chr12	10571622	rs4093355	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:31:3:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.	0/1:0,7:31:7:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,4:30:4:1.00:2	./.	0/1:0,5:32:5:1.00:2	./.	0/1:0,8:30:8:1.00:2
chr12	10571650	rs28521176	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:28:2:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,6:28:6:1.00:2	0/1:0,2:28:2:1.00:2	./.	0/1:0,4:29:4:1.00:2	./.	./.
chr12	10571658	rs28626640	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,2:29:2:1.00:2	./.	0/1:0,2:28:2:1.00:2	./.	./.
chr12	10572982	rs2741881	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,120:32:120:1.00:2	0/1:0,70:33:70:1.00:2	0/1:0,13:32:13:1.00:2	0/1:2,121:33:123:0.984:2	0/1:0,50:32:50:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,134:33:135:1.00:2	0/1:0,107:33:107:1.00:2	0/1:0,143:32:144:1.00:2
chr12	10573094	rs2682491	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,36:31:95:0.379:2	0/1:25,11:29:36:0.306:2	0/1:9,4:29:13:0.308:2	0/1:63,34:31:97:0.351:2	0/1:23,30:30:53:0.566:2	0/1:40,22:31:62:0.355:2	0/1:19,26:31:45:0.578:2	0/1:43,46:31:89:0.517:2	0/1:58,32:30:90:0.356:2	./.	0/1:56,55:30:111:0.495:2
chr12	10573095	rs2682490	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:31:92:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,92:31:92:1.00:2	0/1:0,52:30:53:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,44:30:44:1.00:2	0/1:0,89:30:89:1.00:2	0/1:0,88:32:88:1.00:2	0/1:1,65:32:66:0.985:2	0/1:0,111:29:111:1.00:2
chr12	10573145	rs2682489	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,26:31:44:0.591:2	0/1:13,15:32:28:0.536:2	0/1:2,4:30:6:0.667:2	0/1:37,14:32:51:0.275:2	0/1:57,8:29:65:0.123:2	0/1:30,15:32:45:0.333:2	0/1:72,11:32:83:0.133:2	0/1:100,14:29:114:0.123:2	0/1:45,18:32:63:0.286:2	0/1:0,19:31:19:1.00:2	0/1:117,24:31:141:0.170:2
chr12	10584706	rs140704721	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:180,8:33:188:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr12	10586486	rs190618182	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:184,7:32:191:0.037:2	./.	./.	0/1:173,8:32:181:0.044:2	0/1:162,9:32:171:0.053:2	0/1:117,16:32:133:0.120:2	0/1:140,7:32:147:0.048:2	0/1:173,12:32:185:0.065:2	./.	./.	0/1:192,5:34:197:0.025:2
chr12	10586535	rs145337475	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:146,10:33:156:0.064:2	./.	0/1:3,4:32:7:0.571:2	0/1:120,17:33:137:0.124:2	0/1:121,11:32:132:0.083:2	0/1:77,27:32:104:0.260:2	0/1:97,7:32:104:0.067:2	0/1:125,23:31:148:0.155:2	0/1:135,6:33:141:0.043:2	0/1:112,4:32:116:0.034:2	0/1:123,10:33:133:0.075:2
chr12	10587111	rs61917677	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,128:33:186:0.688:2	0/1:36,100:33:136:0.735:2	0/1:0,14:33:14:1.00:2	0/1:43,103:33:146:0.705:2	0/1:0,121:32:121:1.00:2	0/1:0,109:32:109:1.00:2	0/1:0,102:33:102:1.00:2	0/1:0,167:32:167:1.00:2	0/1:46,137:33:183:0.749:2	0/1:85,59:33:144:0.410:2	0/1:1,191:32:192:0.995:2
chr12	10588444	rs111237999	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,5:34:100:0.051:2	0/1:176,6:34:182:0.033:2
chr12	10588454	rs111449827	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:132,12:33:144:0.083:2	0/1:100,9:33:109:0.083:2	./.	0/1:122,8:29:130:0.062:2	0/1:80,5:34:85:0.059:2	0/1:55,11:33:66:0.167:2	./.	0/1:124,8:30:132:0.061:2	0/1:149,14:32:163:0.086:2	0/1:110,17:32:127:0.134:2	0/1:180,17:30:198:0.086:2
chr12	10588530	rs75545535	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:162,34:30:196:0.173:2	0/1:145,35:28:180:0.194:2	0/1:18,11:29:29:0.379:2	0/1:163,29:29:192:0.151:2	0/1:107,69:29:176:0.392:2	0/1:137,52:29:190:0.275:2	0/1:120,76:29:196:0.388:2	0/1:109,83:29:192:0.432:2	0/1:161,28:31:189:0.148:2	./.	0/1:96,86:29:182:0.473:2
chr12	10588581	rs28403159	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:117,37:33:154:0.240:2	0/1:105,22:32:127:0.173:2	0/1:10,5:33:15:0.333:2	0/1:135,19:32:154:0.123:2	0/1:71,50:32:121:0.413:2	0/1:89,31:32:120:0.258:2	0/1:66,56:33:122:0.459:2	0/1:97,48:33:145:0.331:2	0/1:140,24:34:164:0.146:2	./.	0/1:112,62:32:174:0.356:2
chr12	10600132	rs34477392	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:166,7:30:173:0.040:2	./.	./.	./.	./.	./.	./.
chr12	10600154	rs35728724	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:190,6:30:196:0.031:2	./.	./.	./.	./.	./.	./.
chr12	10600208	rs35373876	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:34:123:0.033:2	./.	./.	./.	./.
chr12	10601891	.	A	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:42,3:33:45:0.067:2	0/1:187,7:33:194:0.036:2	0/1:128,5:35:133:0.038:2	0/1:190,4:34:194:0.021:2	./.	0/1:192,5:33:197:0.025:2	./.	0/1:185,6:33:191:0.031:2	./.
chr12	10601932	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:151,5:29:156:0.032:2	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.	./.
chr12	10601981	.	T	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:128,15:33:143:0.105:2	0/1:103,14:32:117:0.120:2	0/1:122,7:33:129:0.054:2	0/1:112,16:32:128:0.125:2	0/1:114,10:33:124:0.081:2	0/1:137,9:34:146:0.062:2	0/1:124,13:34:137:0.095:2	0/1:167,4:34:171:0.023:2
chr12	10603670	rs2253849	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,99:32:99:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,88:32:88:1.00:2	0/1:1,56:32:57:0.982:2	0/1:0,70:32:70:1.00:2	0/1:1,109:33:110:0.991:2	0/1:1,126:32:127:0.992:2	0/1:0,130:31:130:1.00:2
chr12	10748314	rs2168749	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,25:31:73:0.342:2	0/1:27,13:31:40:0.325:2	0/1:5,4:32:9:0.444:2	0/1:54,27:31:81:0.333:2	0/1:0,32:32:32:1.00:2	./.	0/1:32,23:32:55:0.418:2	0/1:1,58:32:59:0.983:2	0/1:38,34:32:72:0.472:2	./.	0/1:0,102:32:102:1.00:2
chr12	10748403	rs2682484	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,21:30:65:0.323:2	0/1:19,17:31:36:0.472:2	0/1:0,14:30:14:1.00:2	0/1:49,26:30:75:0.347:2	0/1:0,36:31:36:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,45:30:45:1.00:2	0/1:28,50:32:78:0.641:2	./.	0/1:0,88:32:88:1.00:2
chr12	10758907	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,6:33:79:0.076:2	./.	./.	./.
chr12	10758925	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,6:31:84:0.071:2	./.	./.	./.
chr12	10763201	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:29:83:0.048:2
chr12	10763205	rs11053880	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,7:32:10:0.700:2	./.	./.	0/1:24,33:31:57:0.579:2	0/1:36,31:31:67:0.463:2	./.	./.	./.	./.
chr12	10763236	rs10845182	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,51:33:129:0.395:2	0/1:42,46:33:88:0.523:2	0/1:0,21:32:21:1.00:2	0/1:91,66:32:157:0.420:2	0/1:0,91:31:91:1.00:2	0/1:0,129:31:129:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,157:32:157:1.00:2	0/1:86,67:33:153:0.438:2	./.	0/1:0,144:32:144:1.00:2
chr12	10782115	rs3759259	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,22:31:39:0.564:2	0/1:12,8:31:20:0.400:2	./.	0/1:17,18:30:36:0.514:2	0/1:0,30:30:30:1.00:2	0/1:0,27:30:27:1.00:2	0/1:18,10:28:28:0.357:2	0/1:26,22:30:48:0.458:2	0/1:38,26:31:64:0.406:2	0/1:0,34:31:34:1.00:2	0/1:23,15:30:38:0.395:2
chr12	10783729	rs2290717	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,23:27:47:0.489:2	0/1:15,12:27:28:0.444:2	0/1:0,11:27:11:1.00:2	0/1:29,26:25:55:0.473:2	./.	./.	0/1:39,11:28:50:0.220:2	0/1:40,17:27:57:0.298:2	0/1:32,24:31:56:0.429:2	./.	0/1:45,36:27:81:0.444:2
chr12	10854625	rs10845205	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:32:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	0/1:0,108:30:108:1.00:2
chr12	10871667	rs33016	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:30:75:1.00:2	0/1:0,47:28:47:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,65:29:65:1.00:2	0/1:0,68:29:68:1.00:2	0/1:0,93:29:93:1.00:2	0/1:0,76:29:76:1.00:2	0/1:0,90:29:90:1.00:2	0/1:0,104:29:104:1.00:2	0/1:1,75:29:76:0.987:2	0/1:0,78:29:78:1.00:2
chr12	10954258	rs619381	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,12:31:29:0.414:2	0/1:43,12:32:55:0.218:2
chr12	10958658	rs2537817	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:30:85:1.00:2	0/1:0,57:29:57:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,99:30:99:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,69:30:69:1.00:2	0/1:0,86:31:86:1.00:2	0/1:0,70:30:70:1.00:2	0/1:0,88:30:88:1.00:2
chr12	10959031	rs1548803	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,53:31:112:0.473:2	0/1:42,30:31:72:0.417:2	0/1:0,9:31:9:1.00:2	0/1:59,52:30:111:0.468:2	0/1:0,73:30:73:1.00:2	0/1:1,106:30:107:0.991:2	0/1:0,63:30:63:1.00:2	0/1:0,99:30:99:1.00:2	0/1:0,111:31:111:1.00:2	0/1:56,27:31:83:0.325:2	./.
chr12	10959416	rs142540719	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,28:31:59:0.475:2	./.
chr12	10962115	rs3741845	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,19:29:39:0.487:2	0/1:19,21:29:40:0.525:2	./.	0/1:33,20:29:54:0.377:2	0/1:0,26:30:26:1.00:2	0/1:1,29:30:30:0.967:2	0/1:0,30:29:30:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,49:29:49:1.00:2	0/1:17,12:29:29:0.414:2	./.
chr12	10962253	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:28:38:0.105:2	./.
chr12	10978402	rs597468	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,134:32:134:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,162:31:162:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,125:32:126:1.00:2	0/1:0,153:33:153:1.00:2	0/1:0,115:32:115:1.00:2	0/1:0,170:32:170:1.00:2
chr12	10999708	rs1047699	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,113:30:113:1.00:2	0/1:0,59:29:59:1.00:2	0/1:0,11:29:11:1.00:2	0/1:1,185:30:186:0.995:2	0/1:2,111:29:113:0.982:2	0/1:1,157:30:158:0.994:2	0/1:83,57:30:140:0.407:2	0/1:98,76:30:174:0.437:2	0/1:1,131:31:132:0.992:2	0/1:93,64:31:157:0.408:2	0/1:76,72:30:148:0.486:2
chr12	10999780	rs1063193	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:77,61:31:138:0.442:2	0/1:31,32:32:63:0.508:2	0/1:0,13:30:13:1.00:2	0/1:93,90:31:183:0.492:2	0/1:3,153:30:156:0.981:2	0/1:0,178:31:178:1.00:2	0/1:86,81:31:168:0.485:2	0/1:94,94:31:188:0.500:2	0/1:2,135:32:137:0.985:2	0/1:100,86:31:186:0.462:2	./.
chr12	11034970	rs370217783	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:119,4:30:123:0.033:2	./.	./.	0/1:179,11:31:190:0.058:2	./.	./.	./.	./.	./.	./.
chr12	11034979	rs375583668	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:179,11:31:190:0.058:2	./.	./.	./.	./.	./.	./.
chr12	11034980	rs61914782	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:142,40:31:182:0.220:2	0/1:100,33:32:133:0.248:2	./.	0/1:160,29:32:189:0.153:2	./.	./.	./.	./.	./.	./.	0/1:125,46:31:171:0.269:2
chr12	11035274	rs28607516	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,30:32:62:0.484:2	0/1:34,23:32:57:0.404:2	0/1:0,11:32:11:1.00:2	0/1:128,11:31:139:0.079:2	0/1:76,29:32:105:0.276:2	0/1:88,23:31:111:0.207:2	0/1:61,37:31:98:0.378:2	0/1:0,40:32:40:1.00:2	0/1:0,32:32:32:1.00:2	0/1:65,9:31:75:0.122:2	0/1:118,9:32:127:0.071:2
chr12	11061122	rs1015443	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:54,40:32:94:0.426:2	0/1:21,27:31:48:0.563:2	0/1:0,10:28:10:1.00:2	./.	0/1:25,31:32:56:0.554:2	0/1:51,36:32:87:0.414:2	0/1:37,27:32:64:0.422:2	0/1:0,81:32:81:1.00:2	0/1:0,95:33:95:1.00:2	0/1:37,22:31:59:0.373:2	./.
chr12	11081865	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,3:33:40:0.075:2	./.	./.	./.	./.	./.	./.
chr12	11083284	rs2923234	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:152,15:32:168:0.090:2	0/1:116,10:31:126:0.079:2	./.	0/1:160,27:31:188:0.144:2	./.	0/1:170,7:32:177:0.040:2	./.	./.	./.	0/1:188,10:33:198:0.051:2	0/1:118,23:32:141:0.163:2
chr12	11083356	rs116998526	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,98:32:185:0.530:2	0/1:73,77:31:150:0.513:2	0/1:49,5:34:54:0.093:2	0/1:133,57:32:190:0.300:2	0/1:171,27:32:198:0.136:2	0/1:177,19:33:196:0.097:2	0/1:134,53:32:187:0.283:2	0/1:163,31:33:194:0.160:2	0/1:148,45:33:193:0.233:2	0/1:178,13:34:191:0.068:2	0/1:117,74:32:192:0.387:2
chr12	11083465	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,8:30:180:0.044:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	11083474	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,8:31:173:0.046:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	11083515	rs200488155	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:127,43:30:170:0.253:2	0/1:118,34:30:152:0.224:2	./.	0/1:137,46:31:183:0.251:2	./.	./.	./.	./.	./.	./.	0/1:141,30:32:171:0.175:2
chr12	11083516	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:175,7:31:183:0.038:2	./.	./.	./.	./.	./.	./.
chr12	11083525	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:156,13:29:169:0.077:2	./.	./.	./.	./.	./.	./.
chr12	11091432	rs3741843	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,17:33:17:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,2:31:2:1.00:2	0/1:9,8:32:17:0.471:2	0/1:13,5:31:18:0.278:2	0/1:12,4:32:16:0.250:2	0/1:0,10:32:10:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,15:33:15:1.00:2	0/1:6,10:32:16:0.625:2	0/1:12,8:32:20:0.400:2
chr12	11091551	rs16925868	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,19:34:41:0.463:2	./.	./.	./.	./.
chr12	11091693	rs7138535	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:26,12:26:38:0.316:2	0/1:15,10:31:25:0.400:2	./.	0/1:30,22:29:52:0.423:2	./.	./.	./.	./.	./.	./.	0/1:34,32:30:66:0.485:2
chr12	11138683	rs10772397	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:56,48:33:104:0.462:2	0/1:29,25:33:54:0.463:2	0/1:0,11:31:11:1.00:2	./.	0/1:42,51:32:93:0.548:2	0/1:64,45:32:109:0.413:2	0/1:0,84:33:84:1.00:2	0/1:0,122:33:122:1.00:2	0/1:0,123:34:123:1.00:2	0/1:50,31:33:81:0.383:2	./.
chr12	11138852	rs1376251	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:46,32:31:78:0.410:2	0/1:24,29:31:53:0.547:2	./.	./.	./.	./.	0/1:50,30:31:80:0.375:2	0/1:48,37:30:85:0.435:2	0/1:41,39:31:80:0.488:2	0/1:36,28:31:64:0.438:2	./.
chr12	11138935	rs66679979	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,37:29:79:0.468:2	0/1:38,21:30:59:0.356:2	0/1:48,46:29:94:0.489:2	./.	./.	./.	0/1:46,29:30:75:0.387:2	0/1:41,48:29:89:0.539:2
chr12	11149711	rs10845279	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:68,49:31:117:0.419:2	0/1:32,24:31:56:0.429:2	./.	./.	./.	./.	0/1:0,50:31:50:1.00:2	0/1:54,44:32:98:0.449:2	0/1:66,55:32:121:0.455:2	0/1:47,41:32:88:0.466:2	./.
chr12	11149720	rs10845280	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:65,47:33:112:0.420:2	0/1:32,26:33:58:0.448:2	./.	./.	./.	./.	0/1:1,48:33:49:0.980:2	0/1:51,42:33:93:0.452:2	0/1:63,46:34:109:0.422:2	0/1:45,39:33:84:0.464:2	./.
chr12	11149769	rs10845281	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:51,38:30:89:0.427:2	0/1:31,25:29:56:0.446:2	./.	./.	./.	./.	0/1:0,49:30:49:1.00:2	0/1:40,44:28:84:0.524:2	0/1:68,37:30:106:0.352:2	0/1:43,34:29:77:0.442:2	./.
chr12	11150033	rs12226919	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:42,38:32:81:0.475:2	0/1:36,34:32:70:0.486:2	./.	./.	./.	./.	0/1:3,82:30:85:0.965:2	0/1:64,57:31:121:0.471:2	0/1:68,80:32:148:0.541:2	0/1:42,38:32:80:0.475:2	./.
chr12	11150046	rs12226920	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:44,37:32:82:0.457:2	0/1:33,27:32:60:0.450:2	./.	./.	./.	./.	0/1:2,70:30:72:0.972:2	0/1:52,40:31:92:0.435:2	0/1:67,72:32:139:0.518:2	0/1:39,29:32:68:0.426:2	./.
chr12	11150054	rs79420812	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,26:31:62:0.419:2	0/1:49,36:31:85:0.424:2	./.	0/1:35,25:31:60:0.417:2	./.
chr12	11150214	rs11054142	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:26,18:32:44:0.409:2	0/1:13,18:33:31:0.581:2	./.	./.	./.	./.	0/1:0,27:32:27:1.00:2	0/1:17,23:31:41:0.575:2	0/1:16,12:32:28:0.429:2	0/1:14,14:33:28:0.500:2	./.
chr12	11150240	rs7135018	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:14,24:33:38:0.632:2	0/1:15,15:32:30:0.500:2	./.	0/1:17,15:33:32:0.469:2	./.	./.	./.	./.	./.	./.	0/1:20,26:34:46:0.565:2
chr12	11150319	rs11054143	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:50,47:30:97:0.485:2	0/1:37,19:29:56:0.339:2	./.	./.	./.	./.	0/1:0,66:30:66:1.00:2	0/1:47,33:30:80:0.413:2	0/1:56,39:31:95:0.411:2	0/1:36,44:30:80:0.550:2	./.
chr12	11174276	rs10772420	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,34:32:85:0.400:2	0/1:24,25:32:49:0.510:2	0/1:0,13:31:13:1.00:2	0/1:69,42:31:111:0.378:2	0/1:47,27:31:74:0.365:2	0/1:39,40:32:79:0.506:2	0/1:47,34:32:81:0.420:2	0/1:64,45:32:109:0.413:2	0/1:74,71:33:145:0.490:2	./.	0/1:46,56:32:102:0.549:2
chr12	11174498	rs115299813	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,28:32:64:0.438:2	./.	./.	./.	./.
chr12	11174715	rs75356565	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,34:29:72:0.472:2	./.	./.	./.	./.
chr12	11174753	rs1868769	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,97:31:98:0.990:2	0/1:0,56:32:56:1.00:2	0/1:0,12:31:12:1.00:2	0/1:70,32:31:103:0.314:2	0/1:43,30:31:73:0.411:2	0/1:48,35:32:83:0.422:2	0/1:0,52:31:52:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,95:32:95:1.00:2	0/1:52,36:32:88:0.409:2	0/1:66,60:32:126:0.476:2
chr12	11175087	rs12313469	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,29:32:53:0.547:2	0/1:17,9:33:26:0.346:2	0/1:0,9:32:9:1.00:2	0/1:32,28:32:60:0.467:2	0/1:15,23:31:38:0.605:2	0/1:33,34:32:67:0.507:2	0/1:33,13:33:46:0.283:2	0/1:43,26:32:69:0.377:2	0/1:52,24:33:76:0.316:2	./.	0/1:38,17:33:55:0.309:2
chr12	11183042	rs3759246	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,5:29:146:0.034:2	./.
chr12	11183092	rs139069360	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,47:32:190:0.247:2	./.	./.	./.	./.
chr12	11183108	rs12318612	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,31:30:31:1.00:2	./.	0/1:97,54:29:152:0.358:2	0/1:97,75:30:172:0.436:2	./.	0/1:92,89:30:181:0.492:2	0/1:103,84:31:187:0.449:2	./.	./.
chr12	11183191	rs116737741	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,99:29:173:0.572:2	0/1:45,70:29:115:0.609:2	0/1:87,86:29:173:0.497:2	./.	./.	./.	0/1:63,69:30:132:0.523:2	0/1:84,78:29:162:0.481:2
chr12	11183217	rs10772423	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,78:32:149:0.523:2	0/1:47,57:32:104:0.548:2	0/1:0,11:31:11:1.00:2	0/1:90,54:31:144:0.375:2	0/1:60,29:31:89:0.326:2	0/1:86,66:31:152:0.434:2	0/1:101,7:32:108:0.065:2	0/1:74,55:32:129:0.426:2	0/1:100,62:32:162:0.383:2	./.	0/1:89,66:32:155:0.426:2
chr12	11183224	rs116926686	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,27:31:99:0.273:2	./.	./.	./.	./.
chr12	11183255	rs10845293	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,70:31:129:0.543:2	0/1:41,43:31:84:0.512:2	0/1:0,10:30:10:1.00:2	0/1:64,35:31:99:0.354:2	0/1:50,21:30:71:0.296:2	0/1:56,45:30:101:0.446:2	0/1:57,19:30:76:0.250:2	0/1:61,44:30:105:0.419:2	0/1:103,41:31:144:0.285:2	./.	0/1:94,53:29:148:0.361:2
chr12	11183286	rs10845294	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,12:32:12:1.00:2	./.	0/1:39,17:32:56:0.304:2	0/1:51,38:32:89:0.427:2	./.	0/1:62,33:33:95:0.347:2	0/1:76,35:32:111:0.315:2	./.	./.
chr12	11183451	rs10743938	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,117:32:117:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,21:32:21:1.00:2	0/1:50,55:32:105:0.524:2	0/1:45,39:31:84:0.464:2	0/1:69,79:31:148:0.534:2	0/1:1,94:32:95:0.989:2	./.	0/1:0,126:33:126:1.00:2	0/1:43,52:33:95:0.547:2	0/1:60,69:32:129:0.535:2
chr12	11183512	rs12370363	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:49,47:33:96:0.490:2	0/1:16,22:32:38:0.579:2	./.	0/1:32,37:33:69:0.536:2	./.	./.	./.	./.	./.	./.	0/1:45,45:32:90:0.500:2
chr12	11183524	rs75159539	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:95,7:33:102:0.069:2	0/1:36,6:34:42:0.143:2	./.	0/1:74,5:34:79:0.063:2	0/1:33,4:33:37:0.108:2	0/1:80,6:34:87:0.070:2	0/1:42,9:34:51:0.176:2	0/1:73,10:34:83:0.120:2	0/1:67,20:33:87:0.230:2	0/1:56,8:34:64:0.125:2	0/1:88,5:28:93:0.054:2
chr12	11183541	rs78152338	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,5:31:106:0.047:2	0/1:44,10:32:54:0.185:2	0/1:10,3:32:13:0.231:2	0/1:80,9:33:89:0.101:2	0/1:39,6:31:45:0.133:2	0/1:94,9:32:103:0.087:2	0/1:54,4:32:58:0.069:2	0/1:89,4:32:94:0.043:2	0/1:101,15:31:116:0.129:2	0/1:76,4:32:80:0.050:2	0/1:101,16:31:117:0.137:2
chr12	11183576	rs72475488	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,34:30:106:0.321:2	0/1:37,31:29:68:0.456:2	0/1:13,4:29:17:0.235:2	0/1:75,21:31:96:0.219:2	0/1:48,8:31:56:0.143:2	0/1:87,15:30:103:0.147:2	0/1:43,18:30:61:0.295:2	0/1:65,28:30:93:0.301:2	0/1:78,63:31:141:0.447:2	0/1:62,32:30:94:0.340:2	0/1:107,24:30:131:0.183:2
chr12	11183642	rs73049067	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,36:33:102:0.353:2	0/1:38,26:32:64:0.406:2	0/1:25,5:30:30:0.167:2	0/1:98,17:32:115:0.148:2	0/1:43,5:32:48:0.104:2	0/1:83,18:32:101:0.178:2	0/1:42,10:33:52:0.192:2	0/1:68,26:32:94:0.277:2	0/1:81,36:32:117:0.308:2	0/1:78,34:32:112:0.304:2	0/1:107,27:31:135:0.201:2
chr12	11183676	rs73049072	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,24:31:94:0.255:2	0/1:36,14:31:50:0.280:2	0/1:25,5:31:30:0.167:2	0/1:86,8:31:94:0.085:2	./.	0/1:86,13:30:99:0.131:2	0/1:43,4:31:47:0.085:2	0/1:72,18:30:90:0.200:2	0/1:73,16:31:89:0.180:2	0/1:78,19:30:97:0.196:2	0/1:107,17:31:124:0.137:2
chr12	11183697	rs73049074	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,16:32:79:0.203:2	0/1:34,6:32:40:0.150:2	0/1:21,4:32:25:0.160:2	0/1:78,8:33:86:0.093:2	./.	0/1:76,7:31:83:0.084:2	0/1:33,3:32:36:0.083:2	0/1:64,9:31:73:0.123:2	0/1:62,7:32:69:0.101:2	0/1:61,9:31:70:0.129:2	0/1:104,7:33:111:0.063:2
chr12	11183722	rs78562467	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:56,8:33:64:0.125:2	./.	./.	0/1:61,6:32:67:0.090:2	./.	./.	./.	0/1:46,3:33:49:0.061:2	0/1:50,4:33:54:0.074:2	0/1:53,4:33:57:0.070:2	./.
chr12	11183752	rs72475489	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,4:31:59:0.068:2	./.	./.	./.	./.	./.	./.	./.
chr12	11183832	rs10845295	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,33:31:66:0.500:2	0/1:45,19:32:64:0.297:2	0/1:0,12:31:12:1.00:2	0/1:47,51:31:98:0.520:2	0/1:14,29:32:43:0.674:2	0/1:34,42:31:76:0.553:2	./.	0/1:45,48:31:93:0.516:2	0/1:41,45:32:87:0.523:2	./.	0/1:51,54:31:105:0.514:2
chr12	11214006	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:32:181:0.022:2	./.	./.	./.
chr12	11214145	rs2708381	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:69,72:32:142:0.511:2	0/1:57,43:31:100:0.430:2	./.	0/1:88,93:31:181:0.514:2	./.	./.	./.	./.	./.	./.	0/1:83,78:33:161:0.484:2
chr12	11214212	rs2708380	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,87:31:153:0.569:2	0/1:53,37:31:90:0.411:2	0/1:0,25:30:25:1.00:2	0/1:86,77:31:164:0.472:2	0/1:43,48:30:91:0.527:2	0/1:69,80:30:149:0.537:2	./.	0/1:78,80:30:158:0.506:2	0/1:96,83:32:179:0.464:2	0/1:61,77:31:138:0.558:2	0/1:79,86:31:165:0.521:2
chr12	11214360	rs73260771	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,22:32:22:1.00:2	./.	0/1:30,23:33:53:0.434:2	0/1:57,52:32:109:0.477:2	./.	0/1:64,42:33:106:0.396:2	0/1:45,62:33:107:0.579:2	0/1:61,59:33:120:0.492:2	./.
chr12	11214437	rs72477410	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:81,8:32:89:0.090:2	0/1:33,3:32:36:0.083:2	./.	0/1:85,6:32:91:0.066:2	./.	./.	./.	0/1:69,5:32:74:0.068:2	0/1:81,7:31:88:0.080:2	0/1:67,7:33:74:0.095:2	./.
chr12	11214455	rs72477411	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:71,8:32:79:0.101:2	./.	./.	0/1:67,6:27:73:0.082:2	./.	./.	./.	0/1:69,5:32:74:0.068:2	0/1:72,7:32:79:0.089:2	0/1:65,7:32:72:0.097:2	./.
chr12	11214472	rs200936852	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:65,8:32:74:0.110:2	./.	./.	0/1:60,5:26:66:0.077:2	./.	./.	./.	0/1:69,5:32:74:0.068:2	0/1:73,7:32:80:0.088:2	0/1:58,7:32:65:0.108:2	./.
chr12	11214763	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:33:96:0.042:2	./.	./.
chr12	11214768	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:33:99:0.040:2	./.	./.
chr12	11214788	rs2598002	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,6:32:108:0.056:2	./.	./.
chr12	11214840	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:30:80:0.050:2	./.	./.	./.	./.	./.
chr12	11214847	rs201410559	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,7:31:80:0.088:2	./.	./.	./.	./.	./.	./.	./.
chr12	11214857	rs201891491	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,3:32:43:0.070:2	0/1:62,5:32:67:0.075:2	./.	./.	0/1:77,5:36:82:0.061:2	./.	./.
chr12	11214870	rs200226376	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,5:29:66:0.076:2	./.	./.	0/1:61,5:32:66:0.076:2	./.	./.
chr12	11243913	rs200029065	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:33:49:0.082:2	./.	./.	./.	./.
chr12	11243986	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,11:32:110:0.100:2	./.	./.	./.	./.
chr12	11244002	rs202095476	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,5:31:138:0.036:2	0/1:159,5:31:164:0.030:2	./.	./.
chr12	11244070	rs137904578	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,6:28:101:0.059:2	./.	0/1:67,25:33:92:0.272:2	./.	./.	./.	0/1:141,5:29:146:0.034:2
chr12	11244102	rs199943442	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:34:114:0.035:2	./.	./.
chr12	11244112	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:32:85:0.047:2	./.	./.	./.	./.	./.
chr12	11244149	rs73064964	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:66,4:31:70:0.057:2	0/1:50,5:31:55:0.091:2	./.	./.	./.	./.	0/1:86,5:32:91:0.055:2	0/1:77,4:31:81:0.049:2	0/1:85,4:32:89:0.045:2	./.	./.
chr12	11244166	rs35720106	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:5,66:30:71:0.930:2	0/1:5,50:31:55:0.909:2	./.	./.	./.	./.	0/1:7,75:31:82:0.915:2	0/1:8,61:29:69:0.884:2	0/1:4,70:31:74:0.946:2	0/1:6,69:31:75:0.920:2	./.
chr12	11244169	rs201144595	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:68,4:30:72:0.056:2	0/1:50,5:30:55:0.091:2	./.	./.	./.	./.	0/1:81,5:31:86:0.058:2	0/1:70,4:30:74:0.054:2	0/1:74,4:32:78:0.051:2	./.	./.
chr12	11244194	rs71443637	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:3,68:30:71:0.958:2	0/1:2,51:30:53:0.962:2	./.	./.	./.	./.	0/1:35,46:30:81:0.568:2	0/1:8,71:29:79:0.899:2	0/1:0,57:30:57:1.00:2	0/1:4,60:30:64:0.938:2	./.
chr12	11244230	rs144622176	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,41:32:119:0.345:2	./.	./.	./.	./.
chr12	11244319	rs116243872	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,77:32:175:0.440:2	./.	./.	./.	./.
chr12	11244369	rs200586631	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,47:31:113:0.416:2	./.	./.	./.	./.
chr12	11244390	rs73064966	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,5:27:124:0.040:2	0/1:81,4:33:85:0.047:2	./.	./.	./.
chr12	11244432	rs111982292	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:46,5:24:51:0.098:2	./.	./.	./.	./.	0/1:92,5:28:97:0.052:2	0/1:60,7:33:67:0.104:2	0/1:60,8:30:68:0.118:2	0/1:67,7:28:74:0.095:2	./.
chr12	11244470	rs201460452	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,5:26:52:0.096:2	0/1:54,6:24:60:0.100:2	0/1:72,6:26:79:0.077:2	./.
chr12	11244483	rs201210705	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,6:32:63:0.095:2	./.	./.
chr12	11244559	rs144614950	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,28:30:90:0.311:2	./.	./.	./.	./.
chr12	11244631	rs138563991	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,10:32:43:0.233:2	./.	./.	./.	./.
chr12	11244634	rs200893955	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,6:32:50:0.120:2	0/1:16,3:31:19:0.158:2	./.	./.	./.	0/1:36,4:30:40:0.100:2	0/1:39,4:28:43:0.093:2	0/1:40,5:30:45:0.111:2	0/1:55,5:23:60:0.083:2	./.	0/1:52,8:31:60:0.133:2
chr12	11244646	rs201583586	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,6:30:45:0.133:2	0/1:15,3:30:18:0.167:2	./.	./.	./.	0/1:41,4:31:45:0.089:2	0/1:36,4:26:40:0.100:2	0/1:41,5:30:46:0.109:2	0/1:55,5:31:60:0.083:2	./.	0/1:61,7:30:68:0.103:2
chr12	11244673	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:33:50:0.080:2	./.	0/1:63,4:33:67:0.060:2	./.
chr12	11244687	rs113197337	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,6:32:48:0.125:2	./.	./.	./.	./.	0/1:65,4:33:69:0.058:2	0/1:29,4:33:33:0.121:2	0/1:47,5:33:52:0.096:2	0/1:70,4:27:74:0.054:2	0/1:66,4:31:70:0.057:2	0/1:88,7:33:95:0.074:2
chr12	11244723	rs191086711	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:32:68:0.059:2	./.
chr12	11244725	rs68157013	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,41:30:41:1.00:2	0/1:0,27:29:27:1.00:2	./.	./.	0/1:44,5:29:49:0.102:2	./.	0/1:22,23:30:45:0.511:2	0/1:4,40:30:44:0.909:2	0/1:0,63:31:63:1.00:2	0/1:7,59:30:66:0.894:2	./.
chr12	11244734	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,4:31:71:0.056:2	./.	./.	./.	./.	./.	./.	./.
chr12	11286088	rs2599404	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,61:33:132:0.462:2	0/1:58,39:33:97:0.402:2	0/1:0,16:32:16:1.00:2	0/1:77,67:33:144:0.465:2	0/1:35,32:32:67:0.478:2	0/1:63,81:32:144:0.563:2	0/1:52,41:33:93:0.441:2	0/1:80,77:32:157:0.490:2	0/1:78,70:34:148:0.473:2	0/1:64,67:33:131:0.511:2	0/1:62,76:32:138:0.551:2
chr12	11286149	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:132,4:33:136:0.029:2	./.	./.	./.	./.	0/1:146,4:32:150:0.027:2	./.	./.	./.	./.	0/1:168,6:32:174:0.034:2
chr12	11286164	rs200661425	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:143,9:30:152:0.059:2	0/1:83,4:30:87:0.046:2	./.	0/1:97,6:32:104:0.058:2	./.	0/1:148,13:30:161:0.081:2	0/1:71,5:31:76:0.066:2	0/1:114,4:31:118:0.034:2	0/1:149,5:31:154:0.032:2	0/1:136,4:32:140:0.029:2	0/1:174,7:30:181:0.039:2
chr12	11286184	rs201738458	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:136,14:30:150:0.093:2	0/1:91,11:31:102:0.108:2	./.	0/1:101,16:29:117:0.137:2	./.	0/1:159,14:30:173:0.081:2	0/1:74,13:30:87:0.149:2	0/1:118,13:27:131:0.099:2	0/1:143,12:31:156:0.077:2	0/1:134,21:30:155:0.135:2	0/1:172,15:30:187:0.080:2
chr12	11286214	rs200082783	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:154,5:27:159:0.031:2	0/1:105,5:31:110:0.045:2	./.	./.	./.	./.	./.	0/1:155,9:29:164:0.055:2	./.	0/1:165,12:31:177:0.068:2	./.
chr12	11286249	rs77777159	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:142,10:32:152:0.066:2	0/1:114,10:30:124:0.081:2	./.	0/1:147,13:33:160:0.081:2	./.	0/1:149,6:31:156:0.039:2	0/1:96,9:32:105:0.086:2	0/1:148,15:31:163:0.092:2	0/1:141,8:33:149:0.054:2	0/1:156,19:32:175:0.109:2	0/1:156,11:33:167:0.066:2
chr12	11286379	rs112849631	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,51:29:104:0.490:2	./.	./.	./.	./.
chr12	11286749	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.	./.
chr12	11286790	rs2600355	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,26:33:68:0.382:2	0/1:14,20:33:34:0.588:2	0/1:0,5:32:5:1.00:2	0/1:26,20:33:46:0.435:2	0/1:11,8:32:19:0.421:2	0/1:28,21:32:49:0.429:2	0/1:17,13:32:30:0.433:2	0/1:18,23:32:41:0.561:2	0/1:23,26:32:49:0.531:2	0/1:33,19:33:52:0.365:2	0/1:48,36:33:84:0.429:2
chr12	11286797	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:46,14:32:60:0.233:2	./.	./.	0/1:42,3:32:45:0.067:2	./.	0/1:41,4:32:45:0.089:2	./.	./.	./.	./.	./.
chr12	11286807	rs113282241	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,14:32:53:0.264:2	./.	./.	./.	./.	0/1:37,5:29:42:0.119:2	./.	./.	./.	./.	./.
chr12	11286820	rs111958076	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,14:31:44:0.318:2	./.	./.	./.	./.	0/1:33,4:30:37:0.108:2	./.	./.	./.	./.	./.
chr12	11338613	rs1650017	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:32:19:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,7:27:7:1.00:2	0/1:32,11:32:43:0.256:2	0/1:27,22:31:49:0.449:2	0/1:27,20:32:47:0.426:2	0/1:0,15:31:15:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,39:31:39:1.00:2	0/1:52,5:30:57:0.088:2
chr12	11338614	rs1669411	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:32:19:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,7:30:7:1.00:2	0/1:33,11:32:44:0.250:2	0/1:27,22:31:49:0.449:2	0/1:27,20:32:47:0.426:2	0/1:0,15:32:15:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,39:32:39:1.00:2	0/1:51,5:28:56:0.089:2
chr12	11338669	rs1669412	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:33,21:32:54:0.389:2	0/1:15,9:32:24:0.375:2	./.	0/1:50,24:31:74:0.324:2	./.	./.	0/1:23,23:32:46:0.500:2	./.	./.	./.	0/1:43,15:31:58:0.259:2
chr12	11338750	rs1451772	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:40,26:31:66:0.394:2	0/1:18,12:33:30:0.400:2	./.	0/1:52,23:33:75:0.307:2	./.	./.	0/1:23,22:32:45:0.489:2	./.	./.	./.	0/1:43,31:33:74:0.419:2
chr12	11338781	rs1669413	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:32:62:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,11:31:11:1.00:2	0/1:41,24:32:65:0.369:2	0/1:22,18:31:40:0.450:2	0/1:41,31:32:72:0.431:2	0/1:0,35:31:35:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,40:32:40:1.00:2	0/1:50,35:32:85:0.412:2
chr12	11338957	rs5020531	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,15:32:24:0.625:2	0/1:5,7:32:12:0.583:2	./.	./.	0/1:5,7:31:12:0.583:2	0/1:7,11:32:18:0.611:2	0/1:9,3:33:12:0.250:2	0/1:1,12:32:13:0.923:2	0/1:0,11:33:11:1.00:2	0/1:1,6:33:7:0.857:2	./.
chr12	11338983	rs1650019	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,28:33:28:1.00:2	0/1:0,14:33:14:1.00:2	./.	0/1:18,12:33:30:0.400:2	0/1:4,7:32:11:0.636:2	0/1:12,14:31:26:0.538:2	0/1:0,8:32:8:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,17:33:17:1.00:2	0/1:1,9:33:10:0.900:2	0/1:20,17:33:37:0.459:2
chr12	11339020	rs35969491	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,19:32:28:0.679:2	0/1:8,5:32:13:0.385:2	./.	./.	0/1:4,4:33:8:0.500:2	0/1:14,14:32:28:0.500:2	./.	0/1:1,6:30:7:0.857:2	0/1:0,24:32:24:1.00:2	0/1:0,12:32:12:1.00:2	./.
chr12	11420484	rs11054203	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:19:3:1.00:2	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	0/1:0,3:33:3:1.00:2	./.	0/1:0,2:32:2:1.00:2	./.
chr12	11420517	rs12368171	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:30,9:32:39:0.231:2	0/1:10,3:33:13:0.231:2	./.	0/1:18,7:33:25:0.280:2	./.	0/1:26,7:34:33:0.212:2	0/1:21,4:30:25:0.160:2	0/1:27,5:31:32:0.156:2	0/1:21,8:32:29:0.276:2	0/1:22,7:32:29:0.241:2	0/1:20,4:33:24:0.167:2
chr12	11420534	rs200117404	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,9:27:46:0.196:2	./.	./.	./.	./.
chr12	11420584	rs28628341	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:32:81:0.049:2	0/1:112,4:32:116:0.034:2	./.
chr12	11420610	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,3:33:52:0.058:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	11420715	rs11054207	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:53,5:26:58:0.086:2	./.	./.	0/1:30,8:26:38:0.211:2	./.	./.	0/1:26,5:27:32:0.161:2	./.	./.	./.	0/1:28,5:24:33:0.152:2
chr12	11420773	rs200940772	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,4:26:26:0.154:2	./.	./.	./.	./.	./.	0/1:75,6:29:81:0.074:2	./.	./.	./.
chr12	11420778	rs11054206	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,8:29:51:0.157:2	./.	0/1:3,5:22:8:0.625:2	0/1:25,6:26:32:0.194:2	0/1:15,6:25:21:0.286:2	0/1:17,7:27:24:0.292:2	./.	0/1:69,9:27:82:0.115:2	./.	0/1:56,6:29:63:0.097:2	0/1:24,5:31:29:0.172:2
chr12	11420878	.	T	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,8:18:60:0.133:2	./.	./.	./.	./.	0/1:50,5:27:55:0.091:2	./.	0/1:53,5:30:58:0.086:2	0/1:42,7:31:49:0.143:2	0/1:75,5:27:80:0.063:2	./.
chr12	11420904	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:31:42:0.095:2	./.	./.	./.	./.
chr12	11420958	rs71455362	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:42,39:29:81:0.481:2	0/1:26,18:28:44:0.409:2	./.	./.	./.	./.	0/1:74,5:25:79:0.063:2	./.	./.	./.	./.
chr12	11422526	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:31:98:0.041:2	./.	./.	./.	./.	./.
chr12	11422535	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:31:97:0.041:2	./.	./.	./.	./.	./.
chr12	11422551	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:31:100:0.040:2	./.	./.	./.	./.	./.
chr12	11461292	rs1052808	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,131:31:131:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,33:31:33:1.00:2	0/1:92,78:31:170:0.459:2	0/1:50,59:31:109:0.541:2	0/1:74,77:32:151:0.510:2	0/1:0,109:32:109:1.00:2	0/1:2,173:32:175:0.989:2	0/1:2,129:32:131:0.985:2	0/1:0,106:31:106:1.00:2	0/1:80,79:32:159:0.497:2
chr12	11461338	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,8:28:186:0.043:2	./.	./.	0/1:173,6:31:179:0.034:2
chr12	11461396	rs374921001	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:32:155:0.026:2	./.	./.	./.
chr12	11461470	rs1052807	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,97:31:97:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,19:32:19:1.00:2	0/1:65,47:31:113:0.420:2	0/1:34,28:32:63:0.452:2	0/1:47,47:31:96:0.500:2	0/1:0,60:31:62:1.00:2	0/1:1,107:31:108:0.991:2	0/1:3,99:32:102:0.971:2	0/1:0,100:31:100:1.00:2	0/1:49,40:32:93:0.449:2
chr12	11461549	rs11054243	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:43,14:24:57:0.246:2	0/1:25,6:27:31:0.194:2	./.	./.	0/1:35,6:25:41:0.146:2	./.	0/1:25,6:25:31:0.194:2	0/1:36,11:29:47:0.234:2	0/1:24,15:29:41:0.385:2	0/1:37,11:29:48:0.229:2	0/1:46,13:29:59:0.220:2
chr12	11461553	rs11054244	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,17:31:59:0.288:2	0/1:24,9:32:33:0.273:2	./.	0/1:64,5:30:69:0.072:2	0/1:35,6:32:41:0.146:2	./.	0/1:22,13:32:35:0.371:2	0/1:33,14:31:47:0.298:2	0/1:23,20:32:43:0.465:2	0/1:33,15:30:48:0.313:2	0/1:43,20:32:63:0.317:2
chr12	11461570	rs59189129	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,22:29:51:0.431:2	0/1:12,14:31:26:0.538:2	0/1:1,3:31:4:0.750:2	0/1:53,11:32:64:0.172:2	0/1:41,6:30:47:0.128:2	0/1:40,8:31:48:0.167:2	0/1:22,19:29:41:0.463:2	0/1:24,17:30:41:0.415:2	0/1:27,11:32:38:0.289:2	0/1:29,24:31:53:0.453:2	0/1:59,8:30:67:0.119:2
chr12	11461580	rs12303607	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:37,15:30:52:0.288:2	0/1:11,12:31:24:0.522:2	./.	0/1:49,8:32:57:0.140:2	0/1:43,4:30:47:0.085:2	0/1:36,5:33:41:0.122:2	0/1:29,16:31:46:0.356:2	0/1:20,15:31:36:0.429:2	0/1:36,7:32:43:0.163:2	0/1:33,19:31:52:0.365:2	0/1:38,23:27:62:0.377:2
chr12	11461596	rs59021567	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:47,9:28:56:0.161:2	0/1:19,8:30:27:0.296:2	./.	0/1:61,6:29:69:0.090:2	0/1:46,5:25:51:0.098:2	0/1:41,7:32:48:0.146:2	0/1:33,16:31:49:0.327:2	0/1:42,7:32:49:0.143:2	0/1:50,11:33:61:0.180:2	0/1:47,10:30:57:0.175:2	0/1:65,4:30:69:0.058:2
chr12	11461706	rs12308381	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:50,18:26:69:0.265:2	0/1:26,8:26:34:0.235:2	./.	0/1:50,12:26:62:0.194:2	0/1:36,5:23:41:0.122:2	0/1:34,7:26:41:0.171:2	0/1:33,14:28:47:0.298:2	0/1:54,23:24:77:0.299:2	0/1:52,17:27:69:0.246:2	0/1:51,20:26:71:0.282:2	0/1:68,10:22:78:0.128:2
chr12	11461742	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,6:26:71:0.085:2	./.	0/1:59,5:27:64:0.078:2	./.
chr12	11461745	rs76859544	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:65,6:33:71:0.085:2	0/1:34,5:27:39:0.128:2	./.	./.	./.	./.	0/1:33,7:33:40:0.175:2	0/1:66,5:32:71:0.070:2	0/1:46,6:33:52:0.115:2	0/1:57,4:32:61:0.066:2	./.
chr12	11461769	rs144658455	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:58,6:24:64:0.094:2	0/1:42,4:28:46:0.087:2	./.	0/1:88,8:26:96:0.083:2	0/1:47,10:27:57:0.175:2	0/1:31,8:26:39:0.205:2	0/1:40,16:27:56:0.286:2	0/1:82,7:28:89:0.079:2	0/1:49,22:28:71:0.310:2	0/1:62,7:24:69:0.101:2	0/1:57,6:23:63:0.095:2
chr12	11461802	rs12829245	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:36,30:28:66:0.455:2	0/1:22,22:30:44:0.500:2	0/1:2,7:31:9:0.778:2	./.	0/1:37,20:28:57:0.351:2	0/1:35,13:29:48:0.271:2	./.	./.	0/1:64,24:29:88:0.273:2	0/1:47,24:30:71:0.338:2	./.
chr12	11462275	rs1834857	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,31:32:31:1.00:2	0/1:2,58:33:60:0.967:2	0/1:0,95:34:95:1.00:2	0/1:0,77:33:77:1.00:2	0/1:47,34:34:81:0.420:2
chr12	11506211	rs76504934	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,169:31:176:0.960:2	0/1:9,156:31:167:0.945:2	./.	0/1:5,167:32:172:0.971:2	0/1:17,153:31:170:0.900:2	0/1:11,167:32:178:0.938:2	0/1:132,56:32:190:0.298:2	0/1:140,55:32:195:0.282:2	0/1:122,70:33:194:0.365:2	0/1:71,121:31:192:0.630:2	0/1:11,160:31:171:0.936:2
chr12	11506281	rs61930108	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,43:31:44:0.977:2	./.	./.	./.	./.	0/1:135,49:31:184:0.266:2	./.	0/1:118,52:30:170:0.306:2	./.
chr12	11506286	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,5:29:140:0.036:2	./.	./.	./.	./.	./.
chr12	11506288	rs140825288	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,5:32:163:0.031:2	./.	./.	./.
chr12	11506303	rs201682460	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:134,6:31:140:0.043:2	0/1:98,7:28:105:0.067:2	./.	./.	./.	./.	0/1:147,6:30:153:0.039:2	0/1:148,6:31:154:0.039:2	./.	./.	0/1:132,9:30:141:0.064:2
chr12	11506347	rs371841290	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,78:30:106:0.736:2	0/1:15,33:31:49:0.688:2	./.	0/1:11,42:30:53:0.792:2	0/1:17,28:28:45:0.622:2	0/1:28,39:28:67:0.582:2	0/1:84,26:29:110:0.236:2	0/1:82,42:29:124:0.339:2	0/1:91,42:29:133:0.316:2	0/1:35,67:30:102:0.657:2	0/1:22,81:28:103:0.786:2
chr12	11506350	rs377208399	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	./.	./.	./.	0/1:101,22:29:124:0.179:2	./.	0/1:76,24:28:100:0.240:2	./.
chr12	11506356	rs201055825	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:93,8:18:101:0.079:2	./.	0/1:0,3:25:3:1.00:2	./.	./.	0/1:53,6:23:59:0.102:2	0/1:90,5:27:95:0.053:2	0/1:95,19:24:114:0.167:2	./.	0/1:76,17:25:93:0.183:2	./.
chr12	11506399	rs111543911	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,5:26:50:0.102:2	./.	./.	0/1:19,5:27:24:0.208:2	0/1:16,4:26:20:0.200:2	0/1:16,6:26:22:0.273:2	0/1:37,14:28:51:0.275:2	0/1:43,23:26:66:0.348:2	0/1:51,18:30:69:0.261:2	0/1:15,8:26:23:0.348:2	./.
chr12	11506403	rs113897264	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,38:31:39:0.974:2	0/1:0,24:30:24:1.00:2	./.	0/1:2,17:31:20:0.895:2	0/1:3,13:28:16:0.813:2	0/1:0,19:30:20:1.00:2	0/1:21,27:28:48:0.563:2	./.	0/1:33,29:31:62:0.468:2	0/1:2,15:31:17:0.882:2	0/1:0,41:30:41:1.00:2
chr12	11506408	rs113518684	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,14:29:49:0.286:2	0/1:39,15:30:54:0.278:2	0/1:43,20:31:64:0.317:2	./.	./.
chr12	11506427	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,3:33:55:0.055:2	./.	./.	./.
chr12	11506464	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:3,4:31:7:0.571:2	./.	./.	./.	./.	./.	./.	0/1:66,5:27:71:0.070:2	./.	./.	./.
chr12	11506473	rs61930109	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,2:30:2:1.00:2	./.	0/1:0,5:32:5:1.00:2	0/1:0,2:30:2:1.00:2	./.	./.	0/1:32,10:33:42:0.238:2	0/1:42,29:31:71:0.408:2	./.	0/1:0,24:31:24:1.00:2	0/1:0,5:27:5:1.00:2
chr12	11506486	.	G	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,8:31:11:0.727:2	./.	./.	0/1:62,4:28:66:0.061:2	./.	0/1:6,3:29:9:0.333:2
chr12	11506533	rs113485215	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:31:17:1.00:2	0/1:0,5:32:5:1.00:2	./.	0/1:1,9:32:10:0.900:2	0/1:0,4:28:4:1.00:2	0/1:2,17:30:19:0.895:2	0/1:28,17:32:45:0.378:2	0/1:87,24:29:111:0.216:2	0/1:49,11:28:60:0.183:2	0/1:46,9:31:55:0.164:2	0/1:0,19:31:19:1.00:2
chr12	11506539	rs372840161	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,3:32:11:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	11506582	rs199764037	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,15:30:42:0.375:2	0/1:12,9:29:21:0.429:2	./.	0/1:18,7:30:25:0.280:2	0/1:6,3:31:9:0.333:2	0/1:16,8:30:24:0.333:2	0/1:50,8:26:58:0.138:2	0/1:129,9:28:139:0.065:2	0/1:57,15:30:72:0.208:2	0/1:52,5:30:57:0.088:2	0/1:29,12:29:41:0.293:2
chr12	11506583	rs111877208	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:29:41:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,5:31:5:1.00:2	0/1:2,23:30:25:0.920:2	0/1:0,9:27:9:1.00:2	0/1:0,23:29:23:1.00:2	0/1:28,32:28:60:0.533:2	0/1:47,89:28:136:0.654:2	0/1:43,31:30:76:0.419:2	0/1:0,56:28:56:1.00:2	0/1:0,39:29:40:1.00:2
chr12	11506586	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,5:24:63:0.079:2	0/1:138,6:26:145:0.042:2	0/1:72,8:31:80:0.100:2	./.	./.
chr12	11506591	rs112485268	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,25:29:48:0.521:2	0/1:12,14:32:26:0.538:2	./.	0/1:16,14:30:30:0.467:2	0/1:5,6:30:11:0.545:2	0/1:15,12:30:27:0.444:2	0/1:56,20:29:77:0.263:2	0/1:123,23:29:146:0.158:2	0/1:66,17:31:83:0.205:2	0/1:53,8:29:61:0.131:2	0/1:25,27:30:52:0.519:2
chr12	11506647	rs372620668	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:57,17:30:74:0.230:2	0/1:26,6:31:32:0.188:2	./.	0/1:33,12:30:45:0.267:2	0/1:18,6:31:24:0.250:2	0/1:43,10:30:53:0.189:2	0/1:88,7:32:95:0.074:2	0/1:175,10:30:186:0.054:2	0/1:107,8:32:115:0.070:2	0/1:65,10:30:75:0.133:2	0/1:69,20:29:89:0.225:2
chr12	11506654	rs199775084	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:70,25:29:95:0.263:2	0/1:31,6:30:37:0.162:2	./.	0/1:32,12:27:44:0.273:2	0/1:19,6:28:25:0.240:2	0/1:47,10:28:57:0.175:2	0/1:94,8:29:102:0.078:2	0/1:179,12:29:191:0.063:2	0/1:112,11:29:123:0.089:2	0/1:70,12:23:82:0.146:2	0/1:74,19:27:93:0.204:2
chr12	11506669	rs74903687	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:37,75:30:112:0.670:2	0/1:16,31:31:47:0.660:2	./.	0/1:23,34:30:57:0.596:2	0/1:13,16:31:29:0.552:2	0/1:16,44:30:60:0.733:2	0/1:44,65:31:109:0.596:2	0/1:105,76:30:181:0.420:2	0/1:58,68:32:126:0.540:2	0/1:59,50:32:109:0.459:2	0/1:33,82:30:115:0.713:2
chr12	11506749	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:75,57:31:132:0.432:2	0/1:34,22:28:56:0.393:2	./.	0/1:28,26:31:54:0.481:2	0/1:17,8:32:25:0.320:2	0/1:34,40:31:74:0.541:2	0/1:33,46:31:79:0.582:2	0/1:76,55:32:132:0.420:2	0/1:71,45:31:117:0.388:2	0/1:91,24:31:116:0.209:2	0/1:68,60:31:128:0.469:2
chr12	11506774	rs202083397	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:65,43:31:108:0.398:2	0/1:26,16:31:42:0.381:2	./.	0/1:24,16:30:40:0.400:2	0/1:20,4:33:24:0.167:2	0/1:35,29:29:64:0.453:2	0/1:34,29:29:63:0.460:2	0/1:84,42:31:126:0.333:2	0/1:71,24:31:96:0.253:2	0/1:80,15:32:95:0.158:2	0/1:62,45:30:107:0.421:2
chr12	11506785	rs201935302	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:70,31:30:101:0.307:2	0/1:26,13:31:39:0.333:2	./.	0/1:22,16:29:38:0.421:2	./.	0/1:41,21:29:62:0.339:2	0/1:31,22:30:53:0.415:2	0/1:86,32:30:118:0.271:2	0/1:72,27:31:99:0.273:2	0/1:65,12:30:77:0.156:2	0/1:60,36:31:96:0.375:2
chr12	11506830	.	T	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:72,17:28:89:0.191:2	./.	./.	0/1:26,5:26:31:0.161:2	./.	./.	0/1:31,7:23:38:0.184:2	0/1:104,4:32:108:0.037:2	0/1:63,4:29:67:0.060:2	./.	0/1:59,19:29:78:0.244:2
chr12	11506893	rs10845341	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:30:68:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,44:31:44:1.00:2	0/1:2,13:31:15:0.867:2	0/1:0,38:30:38:1.00:2	0/1:30,15:28:45:0.333:2	0/1:53,66:30:119:0.555:2	0/1:49,36:32:85:0.424:2	0/1:1,73:31:74:0.986:2	0/1:0,86:31:86:1.00:2
chr12	11508406	rs1882252	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,10:31:17:0.588:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	11545931	rs200906432	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:134,8:32:145:0.056:2	./.	./.	./.	0/1:180,4:33:185:0.022:2	0/1:182,5:32:188:0.027:2	./.	./.	0/1:162,9:29:172:0.053:2	0/1:167,5:32:172:0.029:2
chr12	11545942	rs199917918	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,5:30:182:0.027:2	./.	./.	0/1:159,9:31:168:0.054:2	0/1:168,4:32:172:0.023:2
chr12	11545951	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,6:30:156:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	11545964	rs375050877	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:32:162:0.025:2	./.	./.	./.	./.	./.	./.	0/1:164,4:33:168:0.024:2	0/1:158,8:32:166:0.048:2	./.
chr12	11546006	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:156,9:27:165:0.055:2	0/1:140,6:23:146:0.041:2	./.	0/1:150,5:28:155:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr12	11546007	.	T	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:160,7:27:167:0.042:2	0/1:135,8:28:143:0.056:2	./.	./.	0/1:144,7:28:151:0.046:2	./.	0/1:150,5:28:155:0.032:2	./.	./.	0/1:131,6:26:137:0.044:2	0/1:155,10:27:166:0.061:2
chr12	11546009	.	T	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:161,6:30:167:0.036:2	0/1:139,6:29:145:0.041:2	./.	./.	0/1:143,5:28:148:0.034:2	./.	0/1:152,5:30:157:0.032:2	./.	./.	0/1:135,5:29:140:0.036:2	0/1:165,8:27:173:0.046:2
chr12	11546040	rs201848322	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,8:28:150:0.053:2	./.	./.	./.
chr12	11546067	rs372626172	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,14:31:107:0.131:2	./.	./.
chr12	11546072	rs202244094	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:29:92:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	11546086	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:33:159:0.025:2	./.	./.	./.
chr12	11546121	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:141,7:32:148:0.047:2	./.	./.	0/1:99,4:29:103:0.039:2	0/1:147,8:24:155:0.052:2	0/1:68,8:32:76:0.105:2	./.	./.
chr12	11546123	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:141,8:27:149:0.054:2	./.	./.	./.	0/1:146,8:25:154:0.052:2	0/1:68,8:32:76:0.105:2	./.	./.
chr12	11546137	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,5:27:101:0.050:2	./.	./.	./.	./.
chr12	11546187	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,5:30:135:0.037:2	./.	./.	./.	./.
chr12	11546192	rs10845349	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,125:27:155:0.806:2	0/1:13,44:29:57:0.772:2	./.	0/1:24,126:28:150:0.840:2	0/1:31,88:28:119:0.739:2	0/1:19,131:27:151:0.873:2	./.	0/1:116,58:27:174:0.333:2	./.	0/1:29,112:28:142:0.794:2	0/1:41,103:26:145:0.715:2
chr12	11546209	rs201443552	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:165,5:32:170:0.029:2	./.	./.	./.	./.	./.	0/1:172,5:29:177:0.028:2	./.	0/1:164,4:31:168:0.024:2	./.	0/1:154,7:29:162:0.043:2
chr12	11546242	rs200427016	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,15:28:38:0.395:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	11546253	rs373504228	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:163,5:28:168:0.030:2	./.	./.	./.	0/1:180,5:28:185:0.027:2	./.	./.	./.	./.	./.	0/1:161,6:26:167:0.036:2
chr12	11546262	rs199808121	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:128,9:29:137:0.066:2	./.	./.	./.	./.	0/1:173,9:26:183:0.049:2	./.	./.	./.	0/1:169,6:26:176:0.034:2
chr12	11546309	rs201308939	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:147,6:26:155:0.039:2	./.	./.	./.	./.	./.	0/1:180,4:34:185:0.022:2	./.	./.	./.
chr12	11546373	rs79111329	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,7:28:104:0.067:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	11546378	rs200759746	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:122,7:25:129:0.054:2	./.	./.	0/1:133,6:24:140:0.043:2	./.	./.	./.	./.	./.	0/1:160,7:30:167:0.042:2	0/1:139,7:30:146:0.048:2
chr12	11546430	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:152,5:28:157:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr12	11546493	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,6:25:175:0.034:2	./.
chr12	11546616	rs199923047	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:140,25:32:166:0.152:2	0/1:87,21:28:108:0.194:2	./.	0/1:173,8:26:182:0.044:2	0/1:147,12:29:159:0.075:2	0/1:176,6:28:182:0.033:2	0/1:169,14:31:183:0.077:2	0/1:177,6:27:183:0.033:2	0/1:171,8:32:179:0.045:2	0/1:150,21:31:171:0.123:2	0/1:137,20:30:158:0.127:2
chr12	11546625	rs200564286	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:111,4:32:115:0.035:2	./.	0/1:172,6:28:178:0.034:2	./.	./.	0/1:172,5:31:177:0.028:2	./.	0/1:172,5:28:177:0.028:2	./.	0/1:170,8:25:178:0.045:2
chr12	11546634	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:166,6:31:174:0.035:2	0/1:114,4:31:118:0.034:2	./.	0/1:170,7:27:177:0.040:2	./.	./.	0/1:169,13:30:182:0.071:2	0/1:174,7:29:181:0.039:2	./.	./.	0/1:153,13:29:166:0.078:2
chr12	11546677	rs201144571	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:145,24:29:170:0.142:2	0/1:98,23:28:122:0.190:2	./.	0/1:163,9:31:172:0.052:2	0/1:108,8:29:117:0.069:2	0/1:164,8:30:172:0.047:2	0/1:145,12:31:160:0.076:2	0/1:164,9:28:173:0.052:2	0/1:151,13:30:165:0.079:2	0/1:141,28:30:169:0.166:2	0/1:145,22:29:168:0.132:2
chr12	11546686	rs76832300	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:128,44:31:172:0.256:2	0/1:97,26:29:124:0.211:2	./.	0/1:138,30:30:168:0.179:2	0/1:96,21:30:118:0.179:2	0/1:155,23:30:178:0.129:2	0/1:109,57:30:166:0.343:2	0/1:135,39:31:174:0.224:2	0/1:124,39:30:163:0.239:2	0/1:151,19:30:171:0.112:2	0/1:122,42:31:164:0.256:2
chr12	11546742	rs201044388	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:117,33:30:150:0.220:2	0/1:65,22:29:87:0.253:2	./.	0/1:135,25:32:160:0.156:2	0/1:98,16:32:114:0.140:2	0/1:119,24:30:143:0.168:2	0/1:106,48:30:154:0.312:2	0/1:118,34:31:152:0.224:2	0/1:111,36:31:147:0.245:2	0/1:101,18:31:119:0.151:2	0/1:109,30:31:139:0.216:2
chr12	11546749	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:138,9:32:147:0.061:2	0/1:83,8:31:91:0.088:2	./.	0/1:149,7:32:156:0.045:2	0/1:99,5:26:104:0.048:2	./.	0/1:149,10:30:159:0.063:2	0/1:144,10:31:155:0.065:2	0/1:128,10:31:138:0.072:2	0/1:108,11:30:119:0.092:2	0/1:119,15:27:134:0.112:2
chr12	11546751	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,6:30:157:0.038:2	./.	./.	./.
chr12	11546764	rs201994479	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:121,8:30:129:0.062:2	./.	./.	./.	./.	./.	0/1:152,6:30:158:0.038:2	0/1:149,9:31:158:0.057:2	0/1:115,10:32:125:0.080:2	0/1:110,6:31:116:0.052:2	0/1:114,11:32:125:0.088:2
chr12	11546781	rs71443675	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:29:7:1.00:2	./.	./.	./.	./.	0/1:104,44:29:148:0.297:2	./.	./.	./.
chr12	11546799	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,6:29:111:0.054:2	./.	./.	./.	./.	0/1:105,5:25:110:0.045:2	./.	0/1:115,10:27:126:0.080:2	./.	./.	./.
chr12	11546808	rs1921331	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:90,9:31:99:0.091:2	0/1:44,9:25:53:0.170:2	./.	0/1:106,10:30:116:0.086:2	./.	0/1:101,7:29:108:0.065:2	0/1:86,8:31:94:0.085:2	0/1:112,10:32:122:0.082:2	0/1:79,8:28:87:0.092:2	0/1:76,6:26:82:0.073:2	0/1:67,10:31:77:0.130:2
chr12	11546817	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:80,8:26:88:0.091:2	./.	./.	0/1:103,6:28:109:0.055:2	./.	./.	./.	0/1:105,6:23:111:0.054:2	./.	./.	0/1:59,5:26:64:0.078:2
chr12	11548387	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:31:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	11992168	rs11611479	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,13:32:23:0.565:2	0/1:97,87:32:184:0.473:2	./.	0/1:0,171:31:171:1.00:2	./.	0/1:111,85:32:196:0.434:2	./.	./.	./.
chr12	12022495	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,3:33:47:0.064:2	./.	./.	./.
chr12	12240199	rs879732	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,37:32:68:0.544:2	0/1:21,18:32:39:0.462:2	0/1:10,5:32:15:0.333:2	0/1:0,55:31:55:1.00:2	0/1:35,30:31:65:0.462:2	0/1:52,26:29:78:0.333:2	0/1:31,25:32:56:0.446:2	0/1:0,58:31:58:1.00:2	0/1:0,89:32:89:1.00:2	0/1:45,32:32:77:0.416:2	0/1:0,96:32:96:1.00:2
chr12	12240299	rs17819796	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,61:30:135:0.452:2	./.	./.	./.
chr12	12247616	rs11054683	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,68:32:161:0.422:2	./.	0/1:111,63:32:174:0.362:2	./.	0/1:83,69:32:152:0.454:2	./.
chr12	12284908	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,17:11:168:0.102:2
chr12	12284915	rs1012672	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,7:26:18:0.389:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	12301898	rs2302685	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,101:31:101:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,135:31:135:1.00:2	0/1:0,110:31:110:1.00:2	0/1:61,59:30:120:0.492:2	0/1:63,56:30:119:0.471:2	0/1:0,143:31:143:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,105:32:106:1.00:2	0/1:52,49:32:101:0.485:2
chr12	12334006	rs10082834	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,14:31:35:0.400:2	./.	./.	0/1:26,22:30:48:0.458:2	0/1:13,18:31:31:0.581:2	./.
chr12	12336966	rs7978064	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,46:29:90:0.511:2	./.	0/1:30,33:29:63:0.524:2	./.	./.	0/1:50,32:30:82:0.390:2	0/1:32,17:30:49:0.347:2	./.
chr12	12397481	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:34:125:0.032:2	./.	./.	./.	./.
chr12	12483033	rs143567594	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,31:31:45:0.689:2	./.
chr12	12483275	rs1861676	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,50:31:114:0.439:2	0/1:51,32:32:83:0.386:2	0/1:1,4:32:5:0.800:2	0/1:0,93:32:93:1.00:2	0/1:33,28:30:61:0.459:2	0/1:67,42:31:109:0.385:2	0/1:3,61:32:64:0.953:2	0/1:3,87:31:90:0.967:2	0/1:85,48:32:133:0.361:2	0/1:69,34:32:103:0.330:2	0/1:79,54:31:133:0.406:2
chr12	12483318	rs3741801	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,42:31:95:0.442:2	./.	./.	./.	./.	./.	./.
chr12	12483713	rs4763282	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,55:31:106:0.519:2	0/1:27,37:32:64:0.578:2	0/1:0,10:32:10:1.00:2	0/1:61,38:33:99:0.384:2	0/1:41,30:32:71:0.423:2	0/1:71,48:32:119:0.403:2	0/1:0,66:33:66:1.00:2	0/1:1,99:33:100:0.990:2	0/1:64,50:34:114:0.439:2	0/1:46,35:33:81:0.432:2	0/1:96,64:33:160:0.400:2
chr12	12483714	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:33:77:0.053:2	./.	./.	./.	./.
chr12	12483764	rs17375215	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,31:31:83:0.373:2	./.	./.	./.	./.	./.	./.
chr12	12496086	rs3741798	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,33:31:77:0.429:2	0/1:29,24:32:53:0.453:2	0/1:40,44:30:84:0.524:2	./.	./.	./.	./.	./.
chr12	12618690	rs3751262	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,10:28:21:0.476:2	0/1:5,9:28:14:0.643:2	./.	./.	./.	./.	./.
chr12	12630346	rs12815760	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:26:10:0.500:2	./.	./.	./.	0/1:53,52:32:105:0.495:2	./.	./.	./.	./.
chr12	12633204	rs61758451	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,14:31:30:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	12640069	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:31:146:0.027:2	./.	./.	./.	./.	./.
chr12	12674026	rs139487616	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,4:31:98:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr12	12814330	rs3825268	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:34:147:0.027:2	./.	./.	./.
chr12	12814818	rs4763862	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:31:50:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,5:31:5:1.00:2	0/1:50,21:31:71:0.296:2	0/1:0,44:31:44:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,53:31:53:1.00:2	0/1:26,24:32:50:0.480:2	0/1:0,60:31:61:1.00:2	0/1:0,66:32:66:1.00:2
chr12	12815037	rs41276680	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,92:31:194:0.474:2	./.	./.	0/1:55,60:32:115:0.522:2	./.
chr12	12870966	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:115,4:30:119:0.034:2	./.	./.	./.	./.	./.	./.
chr12	12871099	rs2066827	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,5:31:10:0.500:2	./.	./.	./.	./.	./.	./.
chr12	12967095	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:31:138:0.029:2	./.	./.	./.	./.
chr12	12967127	rs1051374	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,47:31:120:0.392:2	./.	./.	./.	./.	./.	0/1:87,98:32:185:0.530:2
chr12	12980279	rs182964541	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:32:10:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	12980286	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:138,4:31:142:0.028:2	./.	./.	./.	./.	./.	./.
chr12	13061294	rs2075288	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,63:32:119:0.529:2	./.	0/1:0,139:32:139:1.00:2	0/1:72,77:31:149:0.517:2	./.	./.	./.	0/1:39,42:32:81:0.519:2
chr12	13068785	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:29:90:0.044:2
chr12	13102576	rs149059133	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,60:30:112:0.536:2	0/1:60,73:31:133:0.549:2	./.	./.	./.	./.
chr12	13102605	rs4630382	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:31:9:0.444:2	./.	./.	0/1:41,43:30:84:0.512:2	./.	./.	./.	0/1:40,25:30:65:0.385:2	0/1:37,25:31:62:0.403:2
chr12	13103266	rs3741822	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,9:31:18:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	13142265	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:32:134:0.030:2
chr12	13208552	rs4763924	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,22:30:66:0.333:2	./.	./.	./.	0/1:18,26:31:44:0.591:2	./.	./.	./.
chr12	13214537	rs3741818	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,154:32:154:1.00:2	0/1:4,89:32:93:0.957:2	0/1:8,21:33:29:0.724:2	0/1:95,94:32:189:0.497:2	0/1:0,177:32:177:1.00:2	0/1:0,182:32:182:1.00:2	0/1:0,176:32:176:1.00:2	0/1:82,105:33:187:0.561:2	0/1:0,178:33:178:1.00:2	0/1:1,171:32:172:0.994:2	0/1:4,178:32:182:0.978:2
chr12	13220182	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:33:145:0.028:2	./.
chr12	13221606	rs1386005	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,108:33:108:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,149:33:149:1.00:2	0/1:0,103:32:103:1.00:2	0/1:1,171:32:172:0.994:2	0/1:0,118:33:118:1.00:2	0/1:0,144:33:144:1.00:2	0/1:0,152:33:152:1.00:2	0/1:0,151:33:151:1.00:2	0/1:0,145:32:145:1.00:2
chr12	13232893	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,4:30:42:0.095:2	./.	./.	./.	./.	./.	./.
chr12	13243598	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:32:148:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	13526328	rs17821405	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:16,14:30:30:0.467:2	0/1:18,6:32:24:0.250:2	0/1:0,8:31:8:1.00:2	./.	0/1:15,10:32:25:0.400:2	./.	0/1:16,18:31:34:0.529:2	./.	./.	0/1:0,21:32:21:1.00:2	0/1:26,18:31:44:0.409:2
chr12	13715954	rs1805246	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	13715975	rs1805247	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,29:27:64:0.453:2	./.	./.	0/1:19,24:26:43:0.558:2	./.
chr12	13716638	rs1806191	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:18,16:29:34:0.471:2	0/1:27,28:31:55:0.509:2	./.	0/1:0,39:30:39:1.00:2	./.	0/1:34,33:30:68:0.493:2	./.	0/1:0,68:30:68:1.00:2	0/1:0,55:30:55:1.00:2	0/1:30,14:30:44:0.318:2	0/1:0,41:30:41:1.00:2
chr12	13717483	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,52:30:98:0.531:2	0/1:37,30:29:67:0.448:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	13717508	rs1806201	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:32:11:0.727:2	./.	./.	./.	0/1:82,65:32:147:0.442:2	./.	./.	./.	./.
chr12	13720043	rs3026160	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,54:32:117:0.462:2	./.	./.	./.	./.	./.	./.	0/1:38,41:33:79:0.519:2
chr12	13764774	rs1805482	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:25,22:32:47:0.468:2	0/1:16,15:31:31:0.484:2	./.	0/1:28,38:31:66:0.576:2	./.	./.	./.	0/1:0,55:31:55:1.00:2	0/1:39,28:32:67:0.418:2	./.	0/1:34,21:31:55:0.382:2
chr12	13768055	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,10:32:96:0.104:2
chr12	14018777	rs7301328	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:29:7:0.429:2	0/1:25,27:31:52:0.519:2	./.	./.	0/1:27,38:32:65:0.585:2	./.	./.	./.	0/1:22,39:30:61:0.639:2
chr12	14019128	rs34315573	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,8:31:16:0.500:2
chr12	14577892	rs2231909	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,10:31:17:0.588:2	0/1:7,4:32:11:0.364:2	./.	0/1:14,10:31:24:0.417:2	0/1:0,13:31:13:1.00:2	0/1:12,11:31:23:0.478:2	0/1:9,4:32:13:0.308:2	0/1:8,6:31:14:0.429:2	0/1:5,14:32:19:0.737:2	0/1:13,17:32:30:0.567:2	./.
chr12	14587301	rs3213764	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,8:33:18:0.444:2	./.	./.	0/1:56,44:31:100:0.440:2	0/1:43,49:33:92:0.533:2	0/1:50,59:33:109:0.541:2	0/1:54,52:34:106:0.491:2	./.	0/1:0,152:33:152:1.00:2
chr12	14656768	rs1600	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,52:33:106:0.491:2	0/1:39,45:33:84:0.536:2	0/1:6,6:32:12:0.500:2	0/1:63,81:33:144:0.563:2	0/1:3,80:32:84:0.964:2	0/1:67,42:32:109:0.385:2	0/1:47,49:32:96:0.510:2	0/1:60,64:32:124:0.516:2	0/1:71,76:33:147:0.517:2	0/1:0,92:32:92:1.00:2	./.
chr12	14664245	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,5:28:157:0.032:2	./.
chr12	14664595	rs10846013	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,14:32:40:0.350:2	./.	./.	./.	./.
chr12	14688644	rs7957558	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:32:92:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,90:31:90:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,123:32:123:1.00:2	0/1:0,110:33:110:1.00:2	0/1:0,76:32:76:1.00:2	0/1:93,93:32:186:0.500:2
chr12	14794062	rs10772800	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,93:32:93:1.00:2	0/1:0,62:32:63:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,183:31:183:1.00:2	0/1:0,124:31:124:1.00:2	0/1:0,182:31:182:1.00:2	0/1:0,145:32:145:1.00:2	0/1:2,149:31:151:0.987:2	0/1:0,150:32:150:1.00:2	0/1:0,126:31:126:1.00:2	0/1:0,117:32:117:1.00:2
chr12	14829893	rs1420635	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,116:33:116:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,157:33:157:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,123:32:123:1.00:2	0/1:0,83:33:83:1.00:2	0/1:1,147:32:148:0.993:2	0/1:0,150:33:150:1.00:2	0/1:0,127:33:128:1.00:2	0/1:0,174:33:174:1.00:2
chr12	14924028	rs16910259	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,22:29:35:0.629:2	0/1:19,24:29:43:0.558:2	0/1:26,18:31:44:0.409:2	./.	0/1:0,42:30:42:1.00:2	./.	0/1:24,13:31:37:0.351:2	./.
chr12	14927722	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,4:33:93:0.043:2	./.	./.	./.	./.	./.	./.
chr12	14927825	rs6645	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,5:32:28:0.179:2	./.	./.	0/1:20,9:31:29:0.310:2	./.	./.
chr12	14927994	rs2195199	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:32:3:1.00:2	0/1:0,26:32:26:1.00:2	0/1:1,17:30:18:0.944:2	0/1:0,21:32:21:1.00:2	./.	0/1:1,24:31:25:0.960:2	0/1:0,24:33:24:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,18:30:18:1.00:2
chr12	14928016	rs7969159	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	0/1:8,15:26:23:0.652:2	./.	./.	0/1:12,12:23:24:0.500:2	./.	./.
chr12	14928195	rs66661591	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:32:6:0.667:2	0/1:15,17:33:32:0.531:2	0/1:29,22:32:51:0.431:2	0/1:33,20:33:53:0.377:2	./.	0/1:3,34:32:37:0.919:2	./.	0/1:20,14:33:34:0.412:2	./.
chr12	14928884	rs187798121	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,35:32:75:0.467:2	./.	./.	./.	./.
chr12	14929429	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:118,4:31:122:0.033:2	./.	./.	./.	./.	./.	./.
chr12	14929642	rs11612057	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:31:4:0.750:2	0/1:17,19:31:36:0.528:2	./.	0/1:12,9:30:21:0.429:2	./.	0/1:1,41:31:42:0.976:2	./.	0/1:8,16:32:24:0.667:2	./.
chr12	14929667	rs3748289	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,19:31:39:0.487:2
chr12	14929872	rs6488710	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,37:32:37:1.00:2	0/1:0,38:32:38:1.00:2	./.	0/1:0,40:31:40:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,42:32:42:1.00:2
chr12	14930055	rs3789999	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,21:32:21:1.00:2	0/1:1,9:33:10:0.900:2	0/1:0,17:32:17:1.00:2	./.	0/1:2,13:32:15:0.867:2	0/1:0,13:33:13:1.00:2	0/1:1,13:32:14:0.929:2	0/1:0,33:32:33:1.00:2
chr12	14930840	rs11056185	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,66:33:129:0.512:2
chr12	14930869	rs79974352	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,13:31:33:0.394:2	./.	./.	0/1:17,22:31:39:0.564:2	./.	./.	./.
chr12	14940118	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,5:30:171:0.029:2	./.	./.	./.	./.	./.
chr12	14941923	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,4:32:43:0.095:2	./.	./.	./.	./.	./.	./.	./.
chr12	14954302	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:32:51:0.078:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	14954311	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:32:47:0.085:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	14959292	rs139378466	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,87:32:197:0.442:2	./.	./.
chr12	14959391	rs2241221	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:33:10:0.500:2	./.	./.	0/1:58,50:31:108:0.463:2	./.	./.	0/1:67,53:34:120:0.442:2	./.	./.
chr12	14959470	rs11609202	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,38:29:78:0.487:2
chr12	14976035	rs140864709	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,18:32:45:0.400:2	./.	./.	./.	./.	./.	./.
chr12	14976063	rs7304054	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:32:8:0.625:2	./.	./.	0/1:28,26:31:54:0.481:2	./.	./.	0/1:26,26:33:52:0.500:2	./.	./.
chr12	14976178	rs7307438	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:33:13:0.385:2	./.	./.	0/1:47,38:32:85:0.447:2	./.	./.	0/1:55,46:32:101:0.455:2	./.	./.
chr12	14976497	rs61920259	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,29:33:47:0.617:2	0/1:11,21:33:32:0.656:2	./.	./.	0/1:21,24:32:45:0.533:2	0/1:13,30:34:43:0.698:2	./.	./.
chr12	14976553	rs17761825	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,10:32:32:0.313:2	0/1:12,8:32:20:0.400:2	0/1:0,5:32:5:1.00:2	0/1:33,15:33:48:0.313:2	0/1:30,11:29:41:0.268:2	./.	./.	0/1:30,21:32:51:0.412:2	./.	0/1:34,25:33:59:0.424:2	./.
chr12	14976697	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,22:32:49:0.449:2	0/1:14,13:31:27:0.481:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	14982352	rs3088190	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,57:33:105:0.543:2
chr12	14993439	rs11276	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:31:5:1.00:2	0/1:57,53:31:110:0.482:2	0/1:50,38:31:88:0.432:2	0/1:49,55:30:104:0.529:2	./.	./.	0/1:51,59:32:110:0.536:2	0/1:38,35:30:73:0.479:2	0/1:51,65:31:116:0.560:2
chr12	14993608	rs3088189	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,13:30:13:1.00:2	0/1:76,50:31:126:0.397:2	0/1:60,41:31:101:0.406:2	0/1:62,51:31:113:0.451:2	./.	./.	0/1:60,56:32:116:0.483:2	0/1:44,33:32:77:0.429:2	0/1:64,45:32:109:0.413:2
chr12	14993854	rs1861698	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:31:8:1.00:2	0/1:47,52:32:99:0.525:2	0/1:28,35:32:63:0.556:2	0/1:40,41:32:81:0.506:2	./.	./.	0/1:58,51:32:109:0.468:2	0/1:32,27:32:59:0.458:2	0/1:57,49:31:106:0.462:2
chr12	15035081	rs4236	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,25:31:66:0.379:2	0/1:24,16:29:40:0.400:2	0/1:0,8:32:8:1.00:2	0/1:46,38:33:84:0.452:2	0/1:47,26:32:73:0.356:2	0/1:41,40:31:81:0.494:2	./.	./.	0/1:49,34:32:83:0.410:2	0/1:47,31:32:78:0.397:2	0/1:60,57:31:117:0.487:2
chr12	15095558	rs4703	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,58:32:58:1.00:2	0/1:0,26:32:26:1.00:2	./.	0/1:27,30:33:57:0.526:2	0/1:55,31:31:86:0.360:2	0/1:38,38:33:76:0.500:2	0/1:61,46:32:108:0.430:2	0/1:58,46:32:104:0.442:2	0/1:41,21:33:62:0.339:2	0/1:0,52:32:52:1.00:2	./.
chr12	15102751	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,4:28:43:0.093:2	./.	./.	./.	./.	./.	./.
chr12	15102799	rs41276686	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,22:33:44:0.500:2	./.	./.	./.
chr12	15103571	rs146450912	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,44:31:121:0.364:2	./.
chr12	15103605	rs2430711	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,100:31:100:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,116:30:116:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,103:30:104:1.00:2	0/1:0,75:30:75:1.00:2	0/1:0,89:30:89:1.00:2	0/1:0,88:31:88:1.00:2	0/1:0,80:30:80:1.00:2	0/1:2,97:30:99:0.980:2
chr12	15134353	rs2230872	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,44:30:114:0.386:2	0/1:37,20:29:57:0.351:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	15262179	rs1055151	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:3,79:30:82:0.963:2	0/1:0,43:31:43:1.00:2	0/1:5,4:29:9:0.444:2	./.	./.	0/1:66,36:29:102:0.353:2	0/1:68,41:29:109:0.376:2	./.	0/1:0,100:30:100:1.00:2	./.	0/1:79,44:30:124:0.358:2
chr12	15264274	rs191757230	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,15:32:29:0.517:2	./.	./.	./.	./.
chr12	15669737	rs1050646	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,49:33:100:0.495:2	0/1:47,29:33:76:0.382:2	./.
chr12	15679120	rs6488782	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:38,34:33:72:0.472:2	0/1:25,22:32:47:0.468:2	0/1:9,3:32:12:0.250:2	./.	./.	0/1:50,48:32:98:0.490:2	./.	./.	./.	0/1:0,116:33:116:1.00:2	./.
chr12	15733669	rs3748299	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,27:31:56:0.482:2
chr12	15803861	rs139258361	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,63:34:170:0.371:2	./.	./.
chr12	15807174	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,15:34:54:0.278:2	./.	./.	./.	./.	./.	./.	./.
chr12	16189694	rs2290979	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,38:30:90:0.422:2	./.	./.	./.	./.	./.	./.	./.
chr12	16713381	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:32:149:0.027:2	./.	./.	./.
chr12	18234256	rs941048	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,30:33:56:0.536:2	0/1:34,23:32:57:0.404:2	./.	./.	0/1:0,83:33:83:1.00:2
chr12	18435452	rs11044004	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,18:31:20:0.900:2	0/1:9,4:31:13:0.308:2	0/1:11,7:29:18:0.389:2	./.	0/1:6,9:32:15:0.600:2	./.
chr12	18443809	rs7133666	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,41:31:100:0.410:2	0/1:45,31:32:76:0.408:2	./.	./.	./.	./.	./.	./.
chr12	18446881	rs7301521	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,34:30:67:0.507:2	0/1:15,16:30:31:0.516:2	./.	./.	./.	./.	./.	./.
chr12	18466908	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,4:32:31:0.129:2	./.
chr12	18473881	rs34734874	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,62:33:62:1.00:2	0/1:1,44:33:45:0.978:2	./.	0/1:57,46:33:103:0.447:2	./.	./.	./.	./.	0/1:36,36:33:72:0.500:2	./.	./.
chr12	18473928	rs12309666	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,10:31:16:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	18499636	rs17847788	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,13:30:22:0.591:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	18649057	rs12312266	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:31:5:1.00:2	0/1:26,18:32:44:0.409:2	0/1:0,22:31:22:1.00:2	0/1:15,24:32:39:0.615:2	./.	./.	0/1:52,34:33:86:0.395:2	./.	./.
chr12	18656225	rs11044142	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,35:31:78:0.449:2	0/1:23,17:33:40:0.425:2	0/1:6,5:32:11:0.455:2	0/1:39,22:32:61:0.361:2	./.	0/1:36,35:31:71:0.493:2	./.	./.	0/1:0,67:33:67:1.00:2	./.	./.
chr12	18841059	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:31:64:0.063:2
chr12	18841115	rs10505830	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:30:14:0.429:2	./.	./.	./.	./.	./.	./.	./.
chr12	18891369	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:33:148:0.027:2	./.
chr12	19671627	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:32:90:0.044:2
chr12	20522252	rs12305038	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,3:31:3:1.00:2	0/1:0,4:31:4:1.00:2	./.	0/1:0,7:29:7:1.00:2	0/1:5,13:30:18:0.722:2	./.	0/1:0,9:31:9:1.00:2	./.	./.	./.	0/1:1,3:32:4:0.750:2
chr12	20766440	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:32:165:0.024:2	./.	./.	./.	./.
chr12	20766559	rs10743380	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,101:30:101:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,93:29:93:1.00:2	0/1:0,86:29:86:1.00:2	0/1:0,98:29:98:1.00:2	0/1:0,83:29:83:1.00:2	0/1:0,85:29:85:1.00:2	0/1:0,73:31:73:1.00:2	0/1:0,90:30:90:1.00:2	0/1:0,113:30:113:1.00:2
chr12	20801669	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,6:33:118:0.051:2	./.	./.
chr12	20801798	rs2229180	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,26:28:62:0.419:2	./.	./.	./.	./.	./.	./.
chr12	20852546	rs34243130	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,36:32:72:0.500:2	0/1:20,22:32:42:0.524:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	20864342	rs36010656	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,34:30:106:0.321:2	./.	./.	./.	./.
chr12	20864356	rs7963279	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,76:30:79:0.962:2	0/1:0,42:32:42:1.00:2	0/1:6,4:31:10:0.400:2	0/1:63,50:29:113:0.442:2	./.	./.	0/1:74,31:29:105:0.295:2	./.	./.	./.	0/1:74,58:30:132:0.439:2
chr12	20903749	rs375039592	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,70:31:108:0.654:2	0/1:42,56:32:98:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	20903757	rs10841611	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:74,34:33:108:0.315:2	0/1:56,40:32:96:0.417:2	./.	./.	0/1:0,111:32:111:1.00:2	./.	./.	0/1:1,175:33:176:0.994:2	0/1:0,154:33:154:1.00:2	0/1:72,73:32:145:0.503:2	0/1:78,88:33:166:0.530:2
chr12	20905250	rs6487138	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:26,37:32:63:0.587:2	0/1:27,19:33:46:0.413:2	./.	./.	0/1:0,39:31:39:1.00:2	./.	./.	0/1:1,55:31:56:0.982:2	0/1:0,78:32:78:1.00:2	0/1:47,33:32:80:0.413:2	0/1:51,49:32:100:0.490:2
chr12	21011381	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,3:30:31:0.097:2	./.	./.	./.	./.	./.	./.
chr12	21011450	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,6:31:99:0.061:2	./.	./.	./.	./.	./.
chr12	21011452	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:32:101:0.040:2	./.	./.	./.	./.	./.
chr12	21011480	rs4149117	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,35:31:93:0.376:2	0/1:23,31:32:56:0.574:2	0/1:2,15:33:17:0.882:2	0/1:1,110:32:112:0.991:2	0/1:0,55:32:55:1.00:2	0/1:0,81:33:81:1.00:2	0/1:0,46:33:46:1.00:2	0/1:1,81:32:82:0.988:2	0/1:0,112:33:113:1.00:2	0/1:3,100:33:104:0.971:2	0/1:0,121:32:121:1.00:2
chr12	21015760	rs7311358	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:97,51:31:148:0.345:2	0/1:51,33:31:84:0.393:2	0/1:0,17:31:17:1.00:2	0/1:1,149:30:150:0.993:2	0/1:0,102:30:102:1.00:2	0/1:0,160:30:160:1.00:2	0/1:2,112:31:114:0.982:2	0/1:0,140:31:140:1.00:2	0/1:0,170:32:170:1.00:2	0/1:0,144:31:144:1.00:2	0/1:0,149:32:149:1.00:2
chr12	21028179	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:33:173:0.023:2
chr12	21028208	rs60140950	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,58:33:127:0.457:2	0/1:83,60:33:143:0.420:2	./.
chr12	21036411	rs2053098	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,25:29:47:0.532:2	0/1:7,8:28:15:0.533:2	0/1:0,3:29:3:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,29:29:29:1.00:2	0/1:1,23:29:24:0.958:2	0/1:0,43:30:43:1.00:2	0/1:0,38:29:38:1.00:2	0/1:2,53:29:55:0.964:2
chr12	21054369	rs3764006	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,41:32:74:0.554:2	0/1:22,19:33:41:0.463:2	0/1:0,5:32:5:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,52:31:52:1.00:2	0/1:33,35:32:68:0.515:2	0/1:1,37:32:38:0.974:2	0/1:0,65:32:65:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,69:33:69:1.00:2	0/1:0,99:31:99:1.00:2
chr12	21069049	rs60571683	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:48,27:33:75:0.360:2	0/1:28,12:33:40:0.300:2	./.	./.	0/1:16,12:31:28:0.429:2	./.	./.	./.	./.	./.	./.
chr12	21174497	rs140440781	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,18:31:40:0.450:2	./.	./.	./.	./.	./.
chr12	21176135	rs1546308	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,192:33:193:0.995:2	0/1:1,147:32:148:0.993:2	0/1:0,46:33:46:1.00:2	0/1:2,185:33:187:0.989:2	0/1:0,193:32:194:1.00:2	0/1:105,95:32:200:0.475:2	0/1:0,190:33:190:1.00:2	0/1:1,191:33:192:0.995:2	0/1:0,187:34:188:1.00:2	0/1:1,190:33:191:0.995:2	0/1:0,188:33:188:1.00:2
chr12	21196424	rs11045676	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:22,30:31:52:0.577:2	0/1:13,17:31:30:0.567:2	./.	./.	0/1:12,13:31:25:0.520:2	./.	./.	./.	0/1:32,18:31:50:0.360:2	./.	./.
chr12	21200089	rs11045681	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:74,62:33:136:0.456:2	0/1:49,51:32:100:0.510:2	./.	./.	0/1:73,69:32:142:0.486:2	./.	./.	./.	0/1:91,104:34:195:0.533:2	./.	./.
chr12	21201663	rs11045689	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,93:30:93:1.00:2	0/1:38,25:30:63:0.397:2	0/1:46,37:29:83:0.446:2	0/1:0,76:29:76:1.00:2	0/1:1,72:30:73:0.986:2	0/1:45,56:31:102:0.554:2	./.	0/1:0,132:30:132:1.00:2
chr12	21207389	rs11045699	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:16,27:33:43:0.628:2	0/1:15,16:33:31:0.516:2	./.	./.	0/1:13,14:34:27:0.519:2	./.	./.	./.	0/1:29,23:34:52:0.442:2	./.	./.
chr12	21243001	rs73241801	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:32:10:0.300:2	./.	./.	./.	./.	./.	./.	0/1:31,25:32:56:0.446:2	./.
chr12	21325714	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:34:63:0.063:2	./.	./.
chr12	21329738	rs2306283	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,59:29:109:0.541:2	0/1:22,36:28:58:0.621:2	0/1:11,12:30:23:0.522:2	0/1:69,70:30:139:0.504:2	0/1:36,24:29:60:0.400:2	./.	./.	./.	0/1:0,106:30:106:1.00:2	0/1:0,93:29:93:1.00:2	./.
chr12	21329761	rs11045818	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,21:31:64:0.328:2	./.	./.	./.	0/1:74,65:33:139:0.468:2	./.	./.
chr12	21329813	rs11045819	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,18:31:48:0.375:2	./.	./.	./.	0/1:63,48:32:111:0.432:2	./.	./.
chr12	21331549	rs4149056	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,75:30:169:0.444:2	./.	0/1:120,75:30:195:0.385:2
chr12	21331599	rs4149057	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:76,50:32:126:0.397:2	0/1:52,29:33:81:0.358:2	0/1:7,5:32:12:0.417:2	0/1:68,58:33:126:0.460:2	0/1:1,93:32:94:0.989:2	0/1:109,56:33:165:0.339:2	0/1:1,89:32:90:0.989:2	0/1:4,121:32:125:0.968:2	0/1:85,74:34:159:0.465:2	./.	0/1:78,82:34:160:0.513:2
chr12	21331625	rs2291075	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,7:32:10:0.700:2	0/1:57,42:32:99:0.424:2	0/1:42,32:32:74:0.432:2	./.	./.	./.	0/1:0,116:33:116:1.00:2	0/1:67,51:32:118:0.432:2	0/1:61,58:32:119:0.487:2
chr12	21375307	rs71577817	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,8:35:17:0.471:2	./.
chr12	21391976	rs34671512	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,65:33:90:0.722:2	./.
chr12	21428307	rs11568565	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:55,29:31:84:0.345:2	0/1:30,16:31:46:0.348:2	./.	./.	./.	./.	./.	./.	./.	0/1:37,26:31:63:0.413:2	./.
chr12	21487544	rs10841795	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,10:31:20:0.500:2	./.	0/1:39,29:31:68:0.426:2	./.	./.	./.	./.	./.	./.
chr12	21593330	rs199611472	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,39:33:63:0.619:2	./.	./.
chr12	21598314	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:32:199:0.020:2	./.	./.
chr12	21614068	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:29:86:0.047:2
chr12	21623179	rs61754415	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:40,146:33:186:0.785:2	0/1:26,162:33:188:0.862:2	./.	./.	./.	./.	./.	./.	./.	0/1:117,79:33:196:0.403:2	./.
chr12	21623921	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:33:117:0.034:2
chr12	21623969	rs6500	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:5,98:32:103:0.951:2	0/1:0,45:32:45:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:39,48:33:87:0.552:2	./.
chr12	21630894	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.	./.
chr12	21654825	rs71539408	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,13:30:16:0.813:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	21654831	rs1060126	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,29:31:59:0.492:2	0/1:22,17:31:39:0.436:2	0/1:13,3:28:16:0.188:2	0/1:51,44:30:95:0.463:2	0/1:144,4:31:148:0.027:2	0/1:0,106:29:106:1.00:2	0/1:69,57:29:126:0.452:2	0/1:0,108:29:108:1.00:2	0/1:47,36:31:83:0.434:2	0/1:41,30:30:71:0.423:2	0/1:58,44:29:102:0.431:2
chr12	21690035	rs117639846	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:27,24:32:51:0.471:2	0/1:116,76:32:192:0.396:2	./.	./.	./.	./.	./.	./.	0/1:93,88:32:181:0.486:2
chr12	21712574	rs1871137	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:30:12:0.667:2	./.	0/1:28,28:29:56:0.500:2	0/1:0,68:30:68:1.00:2	0/1:3,32:31:35:0.914:2	0/1:1,52:30:53:0.981:2	0/1:2,80:31:82:0.976:2	0/1:0,47:31:47:1.00:2	./.
chr12	21713402	rs2306180	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:32:8:0.750:2	./.	0/1:40,39:32:79:0.494:2	0/1:0,78:32:78:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,90:31:90:1.00:2	0/1:2,81:33:83:0.976:2	0/1:0,99:32:99:1.00:2	./.
chr12	21727200	rs376889935	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:122,10:31:132:0.076:2	./.	./.	./.	./.	./.	./.
chr12	21757456	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:32:106:0.038:2	./.	./.	./.
chr12	21797029	rs1650294	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:32:32:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,54:31:54:1.00:2
chr12	21799929	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:33:59:0.068:2	./.	./.	./.	./.
chr12	21967641	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:32:85:0.047:2	./.
chr12	22017422	rs697250	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:33:44:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,5:33:5:1.00:2	0/1:1,63:33:64:0.984:2	0/1:0,34:32:34:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,61:33:61:1.00:2
chr12	22035760	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:115,4:30:119:0.034:2	./.	./.	./.	./.	./.	./.
chr12	22048242	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:113,5:30:118:0.042:2	./.	./.	./.	./.	./.	./.	./.
chr12	22063115	rs10770865	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,21:33:21:1.00:2	0/1:0,13:33:13:1.00:2	./.	0/1:0,12:33:12:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,33:34:33:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,52:34:52:1.00:2
chr12	22065832	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:32:40:0.100:2	./.	./.	./.	./.
chr12	22213786	rs10841930	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,24:32:51:0.471:2	./.	./.	./.
chr12	22218149	rs146887115	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,31:30:80:0.388:2	./.
chr12	22354921	rs704219	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,18:33:39:0.462:2	0/1:5,14:32:19:0.737:2	0/1:0,2:31:2:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,25:32:25:1.00:2	0/1:16,29:32:45:0.644:2	0/1:0,35:32:35:1.00:2	0/1:0,37:32:37:1.00:2	0/1:21,23:32:44:0.523:2	0/1:0,31:33:31:1.00:2	0/1:18,19:33:37:0.514:2
chr12	22402000	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,4:32:87:0.046:2	./.	./.	./.	./.	./.	./.
chr12	22602796	rs2063573	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:30:69:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,77:31:77:1.00:2	0/1:1,71:30:72:0.986:2	0/1:0,101:30:101:1.00:2	0/1:2,75:30:77:0.974:2	0/1:53,45:29:98:0.459:2	0/1:48,53:30:102:0.525:2	0/1:1,66:30:67:0.985:2	0/1:0,87:31:87:1.00:2
chr12	22624985	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,3:33:44:0.068:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	22778158	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,4:32:21:0.190:2	./.	./.	./.	./.	./.	./.	./.
chr12	22814036	rs4963793	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,26:33:60:0.433:2	./.	./.	./.
chr12	23793755	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,33:32:88:0.379:2	0/1:31,18:32:49:0.367:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	25101843	rs80215395	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,9:28:20:0.450:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	25148755	rs864161	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,100:29:100:1.00:2	0/1:0,60:28:60:1.00:2	./.	0/1:0,82:30:82:1.00:2	0/1:0,56:29:56:1.00:2	0/1:0,78:29:78:1.00:2	0/1:0,37:29:37:1.00:2	0/1:0,80:29:80:1.00:2	0/1:0,102:31:102:1.00:2	0/1:0,76:30:76:1.00:2	0/1:1,131:29:133:0.992:2
chr12	25148820	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,11:30:173:0.064:2	./.	./.	./.	./.	./.
chr12	25222360	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,35:32:84:0.417:2	./.
chr12	25242595	rs7969931	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,101:29:101:1.00:2	0/1:0,100:28:100:1.00:2	./.	0/1:81,93:28:174:0.534:2	0/1:55,60:27:115:0.522:2	0/1:0,165:28:165:1.00:2	0/1:1,122:28:123:0.992:2	0/1:0,165:29:165:1.00:2	0/1:1,185:29:186:0.995:2	0/1:100,46:28:146:0.315:2	0/1:0,186:28:186:1.00:2
chr12	25242758	rs77453388	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,20:33:33:0.606:2	./.	./.	./.	./.	./.	0/1:18,29:33:47:0.617:2	./.
chr12	25243115	rs1908946	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,31:33:31:1.00:2	0/1:3,11:32:14:0.786:2	./.	0/1:0,26:33:26:1.00:2	0/1:9,11:33:20:0.550:2	0/1:0,21:32:21:1.00:2	./.	0/1:0,24:33:24:1.00:2	0/1:0,27:34:27:1.00:2	0/1:0,16:32:16:1.00:2	0/1:45,15:32:60:0.250:2
chr12	25261735	rs859146	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:32:23:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,28:30:28:1.00:2
chr12	25272096	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:29:101:0.040:2	./.	./.
chr12	25311489	rs10842496	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,8:32:35:0.229:2	0/1:19,15:31:34:0.441:2	./.	./.	0/1:28,9:33:37:0.243:2	./.	0/1:15,9:31:24:0.375:2	./.
chr12	25314075	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:31:135:0.030:2	./.	./.	./.	./.
chr12	25343516	rs10842501	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,31:32:31:1.00:2	0/1:0,23:31:23:1.00:2	./.	0/1:39,10:30:49:0.204:2	0/1:22,9:31:31:0.290:2	0/1:30,12:30:42:0.286:2	0/1:12,6:31:18:0.333:2	0/1:15,7:31:22:0.318:2	0/1:0,34:31:34:1.00:2	0/1:27,10:32:37:0.270:2	0/1:0,33:32:33:1.00:2
chr12	25362777	rs1137282	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,43:29:105:0.410:2	./.	0/1:43,50:29:93:0.538:2	./.
chr12	25368462	rs4362222	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:31:62:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,90:33:90:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,89:32:89:1.00:2
chr12	25656706	rs78120781	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:27,22:30:49:0.449:2	./.	./.	./.	0/1:15,14:29:29:0.483:2	./.	./.	0/1:23,20:29:43:0.465:2	./.	./.	0/1:56,36:27:92:0.391:2
chr12	25671759	rs1479500	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,50:30:115:0.442:2	0/1:57,43:31:100:0.430:2	0/1:0,19:29:19:1.00:2	0/1:0,125:30:125:1.00:2	0/1:103,62:29:165:0.376:2	0/1:0,169:30:169:1.00:2	0/1:1,144:31:145:0.993:2	0/1:88,79:29:167:0.473:2	0/1:0,175:30:175:1.00:2	0/1:0,96:31:97:1.00:2	0/1:91,49:30:140:0.350:2
chr12	25679729	rs149733853	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,71:31:194:0.366:2	./.	./.	./.
chr12	25702314	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:32:90:0.044:2	./.	./.	./.	./.	./.
chr12	26276096	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:34:42:0.095:2	./.
chr12	26377232	rs34624361	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,74:32:168:0.440:2	0/1:54,40:32:94:0.426:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	26383834	rs12313670	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,22:31:55:0.400:2	./.	./.	./.	0/1:31,21:31:52:0.404:2	./.	./.	./.
chr12	26383959	rs12313736	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,29:30:74:0.392:2	./.	./.	./.	0/1:40,21:30:62:0.344:2	./.	./.	./.
chr12	26648092	rs2230381	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:32,32:33:64:0.500:2	0/1:22,26:33:48:0.542:2	./.	0/1:0,68:33:68:1.00:2	./.	./.	0/1:39,25:32:64:0.391:2	./.	./.	0/1:30,42:33:72:0.583:2	0/1:61,59:33:120:0.492:2
chr12	26732987	rs2230376	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	0/1:11,5:31:16:0.313:2	0/1:6,12:31:18:0.667:2	./.	0/1:6,7:32:13:0.538:2	./.	./.	./.
chr12	26733062	rs2230375	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	0/1:10,7:32:17:0.412:2	0/1:17,14:32:31:0.452:2	./.	0/1:5,15:32:20:0.750:2	./.	./.	./.
chr12	26749831	rs2230377	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:31:12:0.667:2	./.	0/1:44,44:31:88:0.500:2	0/1:44,47:31:91:0.516:2	./.	0/1:60,59:32:119:0.496:2	./.	./.	./.
chr12	26749945	rs2230374	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,35:30:78:0.449:2	./.	./.	./.	./.	./.	./.
chr12	26755546	rs3736185	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,32:33:61:0.525:2	0/1:16,28:33:44:0.636:2	0/1:0,10:32:10:1.00:2	0/1:1,123:32:124:0.992:2	0/1:4,69:31:73:0.945:2	0/1:0,90:32:90:1.00:2	./.	0/1:63,52:32:115:0.452:2	0/1:57,53:33:110:0.482:2	0/1:53,46:32:99:0.465:2	0/1:67,49:32:116:0.422:2
chr12	26775252	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:33:116:0.034:2	./.	./.	./.
chr12	26784850	rs2230372	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,88:32:92:0.957:2	0/1:1,66:32:67:0.985:2	0/1:8,11:28:19:0.579:2	0/1:69,70:31:139:0.504:2	0/1:101,89:32:190:0.468:2	0/1:0,145:31:145:1.00:2	0/1:2,186:32:188:0.989:2	0/1:94,87:32:181:0.481:2	0/1:83,70:33:153:0.458:2	./.	0/1:79,56:31:135:0.415:2
chr12	26806955	rs2230380	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,6:31:8:0.750:2	0/1:30,20:32:50:0.400:2	0/1:27,8:31:35:0.229:2	./.	./.	./.	./.	0/1:18,18:33:36:0.500:2	0/1:0,63:33:63:1.00:2
chr12	26809316	rs2230379	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,40:32:89:0.449:2	0/1:26,28:32:54:0.519:2	./.	./.	./.	0/1:46,46:31:92:0.500:2	0/1:0,87:31:87:1.00:2	0/1:57,48:31:105:0.457:2	./.	./.	./.
chr12	26809412	rs2230378	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,33:33:65:0.508:2
chr12	26810777	rs2291264	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,54:30:98:0.551:2	0/1:34,32:29:66:0.485:2	./.	./.	./.	0/1:67,50:28:117:0.427:2	0/1:2,78:29:80:0.975:2	0/1:2,97:28:99:0.980:2	./.	./.	./.
chr12	26810816	rs2291263	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,37:33:70:0.529:2	0/1:24,22:32:46:0.478:2	./.	./.	./.	0/1:39,26:32:65:0.400:2	0/1:1,42:32:43:0.977:2	0/1:35,30:31:65:0.462:2	./.	./.	./.
chr12	26811045	rs12313993	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,13:25:37:0.351:2	./.	./.	0/1:19,28:29:47:0.596:2	./.	./.
chr12	26839491	rs373326295	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,6:30:172:0.035:2	./.	./.
chr12	26864192	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,4:32:77:0.052:2	./.	./.	./.	./.	./.	./.
chr12	26868289	rs2230383	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,14:33:33:0.424:2	0/1:10,12:32:22:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	26868322	rs1900941	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,36:32:36:1.00:2	0/1:1,39:32:40:0.975:2	./.	./.	0/1:31,25:32:56:0.446:2	0/1:34,26:34:60:0.433:2	0/1:7,23:33:30:0.767:2	0/1:0,60:31:60:1.00:2
chr12	26943170	rs7314747	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,14:31:31:0.467:2	./.	./.	0/1:19,26:31:45:0.578:2	0/1:18,18:32:36:0.500:2	0/1:26,11:33:37:0.297:2	./.
chr12	27064232	rs3210635	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:19,25:32:44:0.568:2	0/1:17,12:32:29:0.414:2	./.	0/1:1,46:31:47:0.979:2	./.	0/1:27,18:32:45:0.400:2	./.	0/1:10,21:31:31:0.677:2	0/1:35,18:32:53:0.340:2	./.	./.
chr12	27143508	rs10771314	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,31:32:72:0.431:2	0/1:50,31:33:81:0.383:2
chr12	27175494	rs3963548	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:93,44:30:137:0.321:2	0/1:41,47:30:88:0.534:2	0/1:0,34:30:34:1.00:2	0/1:1,184:30:185:0.995:2	0/1:0,189:31:189:1.00:2	0/1:120,74:30:194:0.381:2	0/1:0,191:31:191:1.00:2	0/1:0,183:31:183:1.00:2	0/1:2,183:31:185:0.989:2	0/1:102,73:30:175:0.417:2	0/1:103,83:29:186:0.446:2
chr12	27175576	rs77394744	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,53:31:144:0.368:2	./.	./.	./.	./.	./.
chr12	27234184	rs61732116	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,19:31:31:0.613:2	./.	./.	./.	./.	./.
chr12	27234200	rs708165	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,11:31:36:0.306:2	0/1:5,8:33:13:0.615:2	0/1:0,2:32:2:1.00:2	0/1:15,18:32:33:0.545:2	./.	0/1:16,18:31:34:0.529:2	0/1:0,42:32:42:1.00:2	0/1:24,25:32:49:0.510:2	0/1:13,17:33:30:0.567:2	./.	0/1:21,20:33:41:0.488:2
chr12	27234914	rs61741737	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,12:32:32:0.375:2	./.	./.	./.	./.	0/1:21,17:31:38:0.447:2	./.
chr12	27234999	rs708167	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,60:32:135:0.448:2	0/1:58,48:32:106:0.453:2	0/1:10,14:32:24:0.583:2	0/1:73,83:32:156:0.532:2	./.	./.	0/1:4,80:32:84:0.952:2	0/1:65,59:31:124:0.476:2	0/1:69,84:32:153:0.549:2	./.	0/1:92,106:32:198:0.535:2
chr12	27235279	rs12228215	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,10:31:18:0.556:2	./.	./.	./.	0/1:75,52:30:127:0.409:2	./.	./.	./.	0/1:93,63:31:156:0.404:2
chr12	27235381	rs708168	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:89,71:31:160:0.444:2	0/1:77,64:31:141:0.454:2	./.	0/1:106,62:32:168:0.369:2	./.	./.	0/1:97,77:31:174:0.443:2	./.	0/1:118,67:32:185:0.362:2	./.	./.
chr12	27467515	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,74:31:137:0.540:2	./.	./.
chr12	27470866	rs6487601	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:32:37:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,6:33:6:1.00:2	0/1:2,40:32:42:0.952:2	0/1:0,27:32:27:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,48:32:48:1.00:2
chr12	27521205	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:31:142:0.028:2	./.	./.	./.	./.	./.
chr12	27540204	rs71541528	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:33:8:0.750:2	./.	./.	./.	./.	./.	./.	./.	0/1:31,32:34:63:0.508:2
chr12	27553566	rs1037921	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,22:32:51:0.431:2	./.
chr12	27627805	rs411816	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,6:32:6:1.00:2	0/1:39,23:31:62:0.371:2	0/1:0,60:32:60:1.00:2	0/1:36,18:31:54:0.333:2	0/1:0,57:32:57:1.00:2	0/1:45,29:32:75:0.392:2	0/1:51,29:32:80:0.363:2	0/1:27,29:33:56:0.518:2	0/1:0,62:32:62:1.00:2
chr12	27628607	rs117144045	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,16:32:26:0.615:2	./.
chr12	27641473	rs412978	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,15:31:34:0.441:2	./.	0/1:11,11:29:22:0.500:2	0/1:9,10:33:19:0.526:2	0/1:10,27:32:37:0.730:2	0/1:26,22:33:48:0.458:2	0/1:12,13:32:25:0.520:2	./.
chr12	27648710	rs3751223	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,32:32:90:0.356:2	./.	./.
chr12	27648777	rs61997182	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,21:30:40:0.525:2	./.	./.	./.	0/1:24,15:30:39:0.385:2	./.	./.	./.
chr12	27648786	rs306646	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,19:29:34:0.559:2	./.	0/1:16,18:31:34:0.529:2	./.	0/1:20,14:31:34:0.412:2	0/1:23,20:31:43:0.465:2	./.	./.
chr12	27654898	rs61731840	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,5:32:16:0.313:2	./.	0/1:48,43:32:91:0.473:2	./.	./.	./.	./.	./.	0/1:1,100:33:101:0.990:2
chr12	27788021	rs2075378	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:24,35:30:59:0.593:2	0/1:8,20:31:28:0.714:2	0/1:7,6:27:13:0.462:2	./.	0/1:31,20:29:51:0.392:2	0/1:2,67:31:69:0.971:2	0/1:19,26:31:45:0.578:2	./.	0/1:22,27:31:49:0.551:2	0/1:40,29:32:69:0.420:2	0/1:42,38:32:80:0.475:2
chr12	27800746	rs2194816	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:32:49:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,52:31:53:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,69:32:69:1.00:2
chr12	27809558	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:31:107:0.037:2	./.	./.	./.	./.	./.
chr12	27811771	rs192664204	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,41:30:80:0.513:2	./.	./.	./.	./.	./.	./.	./.
chr12	27826780	rs2052673	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:33:56:1.00:2	0/1:0,33:32:33:1.00:2	0/1:2,7:32:9:0.778:2	0/1:0,47:33:47:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,33:32:33:1.00:2	0/1:3,49:32:52:0.942:2	0/1:21,31:33:52:0.596:2	0/1:0,37:33:37:1.00:2	0/1:0,81:32:81:1.00:2
chr12	27849795	rs929948	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:33:26:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,6:29:6:1.00:2	0/1:18,14:33:32:0.438:2	0/1:24,32:32:56:0.571:2	./.	./.	0/1:0,41:32:41:1.00:2	0/1:25,27:34:52:0.519:2	0/1:19,31:34:50:0.620:2	0/1:0,38:32:38:1.00:2
chr12	27849796	rs929949	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:33:26:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,31:30:31:1.00:2	0/1:1,54:32:55:0.982:2	0/1:0,41:30:41:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,48:33:48:1.00:2	0/1:1,47:33:48:0.979:2	0/1:0,38:33:38:1.00:2
chr12	27850113	rs12819160	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,55:31:57:0.965:2	./.	./.	0/1:50,47:32:97:0.485:2	./.	./.
chr12	27867706	rs11049106	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:32:45:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,5:33:5:1.00:2	0/1:31,31:31:62:0.500:2	0/1:19,14:31:33:0.424:2	0/1:0,43:31:43:1.00:2	./.	0/1:0,64:32:64:1.00:2	0/1:38,25:32:63:0.397:2	0/1:33,16:31:49:0.327:2	0/1:0,56:33:56:1.00:2
chr12	27867724	rs372359182	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,4:33:63:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr12	27867727	rs1127787	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:33:8:0.375:2	./.	./.	0/1:1,36:32:37:0.973:2	./.	./.	0/1:43,25:34:68:0.368:2	./.	./.
chr12	27888478	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,55:33:118:0.466:2	./.
chr12	27915718	rs10842975	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,90:31:91:0.989:2	0/1:2,40:30:42:0.952:2	0/1:11,5:28:16:0.313:2	0/1:44,37:31:81:0.457:2	0/1:1,47:30:48:0.979:2	./.	0/1:39,22:30:61:0.361:2	0/1:0,89:31:89:1.00:2	./.	0/1:48,33:31:81:0.407:2	0/1:0,102:31:103:1.00:2
chr12	27915944	rs11049124	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,16:29:38:0.421:2	./.	./.	0/1:4,176:30:180:0.978:2	./.	./.	0/1:110,85:31:195:0.436:2	./.	./.
chr12	27916206	rs11049125	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,14:31:37:0.378:2	./.	./.	0/1:4,163:31:167:0.976:2	./.	./.	0/1:127,68:32:195:0.349:2	./.	./.
chr12	27916224	rs11049126	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,14:33:36:0.389:2	./.	./.	0/1:4,153:32:159:0.975:2	./.	./.	0/1:124,65:34:189:0.344:2	./.	./.
chr12	28412372	rs11049488	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,34:29:81:0.420:2	0/1:32,24:27:56:0.429:2	./.	0/1:34,28:30:62:0.452:2	0/1:39,31:30:70:0.443:2	0/1:0,80:31:80:1.00:2	0/1:24,32:30:56:0.571:2	0/1:45,43:31:88:0.489:2
chr12	28605426	rs10771427	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,13:32:13:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,2:31:2:1.00:2	0/1:8,8:33:16:0.500:2	0/1:0,8:30:8:1.00:2	0/1:14,9:31:23:0.391:2	0/1:1,13:31:14:0.929:2	0/1:21,12:31:33:0.364:2	0/1:0,20:32:20:1.00:2	0/1:0,21:32:21:1.00:2	0/1:1,39:31:40:0.975:2
chr12	29423460	rs2216854	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:55,57:30:112:0.509:2	0/1:42,26:30:68:0.382:2	./.	0/1:74,56:29:130:0.431:2	./.	./.	0/1:2,107:30:109:0.982:2	0/1:1,126:30:127:0.992:2	0/1:78,78:31:156:0.500:2	0/1:0,88:31:88:1.00:2	./.
chr12	29450001	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:31:84:0.048:2	./.	./.	./.
chr12	29450052	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:31:143:0.028:2	./.	./.	./.
chr12	29450060	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:32:160:0.025:2	./.	./.	./.
chr12	29469937	rs75418976	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:11,3:31:14:0.214:2	./.	./.	./.	0/1:8,8:32:16:0.500:2	./.	./.	./.	./.	./.	./.
chr12	29521193	rs12831730	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,10:31:23:0.435:2	0/1:87,74:30:161:0.460:2	0/1:61,53:30:114:0.465:2	0/1:1,126:29:127:0.992:2	./.	./.	./.	./.	./.
chr12	29596365	rs78265994	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:32:9:0.444:2	./.	./.	./.	./.	./.	0/1:11,25:33:36:0.694:2	./.	./.
chr12	29598292	rs7967676	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,10:33:27:0.370:2	./.
chr12	29604392	rs1347570	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:33:9:0.444:2	0/1:0,74:31:74:1.00:2	0/1:25,26:32:51:0.510:2	0/1:42,37:31:79:0.468:2	0/1:32,25:32:57:0.439:2	0/1:0,73:31:73:1.00:2	0/1:0,60:33:60:1.00:2	0/1:0,52:32:52:1.00:2	./.
chr12	29607855	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:32:103:0.039:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	29617550	rs11050243	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,23:31:33:0.697:2	./.	./.	./.	./.	./.	0/1:106,86:32:192:0.448:2	0/1:107,88:31:195:0.451:2	./.
chr12	29624882	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,6:33:43:0.140:2	./.	./.
chr12	29628016	rs2043623	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,11:30:25:0.440:2	0/1:2,115:31:117:0.983:2	0/1:50,36:30:87:0.419:2	0/1:75,45:31:120:0.375:2	0/1:49,36:31:85:0.424:2	0/1:0,144:31:144:1.00:2	0/1:101,63:33:164:0.384:2	0/1:0,101:32:101:1.00:2	./.
chr12	29630081	rs7975356	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,56:32:56:1.00:2	0/1:0,29:31:29:1.00:2	./.	0/1:0,78:31:78:1.00:2	0/1:0,57:30:57:1.00:2	0/1:1,63:30:64:0.984:2	0/1:2,75:31:77:0.974:2	0/1:0,66:31:66:1.00:2	0/1:53,44:32:97:0.454:2	0/1:32,43:31:75:0.573:2	0/1:0,79:31:79:1.00:2
chr12	29631765	rs190664130	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,17:29:36:0.472:2	./.	./.	./.	./.	./.	./.
chr12	29639186	rs3847680	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,25:32:76:0.329:2	0/1:28,11:32:39:0.282:2	0/1:4,12:33:16:0.750:2	0/1:0,58:33:58:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,62:33:62:1.00:2	0/1:0,64:33:64:1.00:2	./.	0/1:57,38:33:95:0.400:2
chr12	29642573	rs967181	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,33:32:56:0.589:2	0/1:20,10:32:30:0.333:2	0/1:3,4:34:7:0.571:2	0/1:0,63:32:63:1.00:2	0/1:58,26:32:84:0.310:2	0/1:0,67:31:67:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,73:32:73:1.00:2	0/1:2,60:33:62:0.968:2	./.	0/1:41,36:33:77:0.468:2
chr12	29642669	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:33:128:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	29648275	rs10843438	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:60,46:32:106:0.434:2	0/1:51,37:33:88:0.420:2	./.	0/1:1,108:33:109:0.991:2	0/1:1,57:32:58:0.983:2	0/1:0,93:32:93:1.00:2	0/1:1,88:33:89:0.989:2	0/1:2,127:32:129:0.984:2	0/1:4,153:33:157:0.975:2	./.	0/1:112,83:33:195:0.426:2
chr12	29736460	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.
chr12	29736480	rs2113879	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:31:13:0.462:2	./.	0/1:47,48:30:95:0.505:2	0/1:4,102:30:106:0.962:2	./.	./.	0/1:46,49:31:95:0.516:2	./.	./.
chr12	30823971	rs1054426	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,26:32:69:0.377:2	0/1:30,11:33:41:0.268:2	0/1:0,24:33:24:1.00:2	0/1:0,67:33:67:1.00:2	./.	0/1:50,37:32:87:0.425:2	0/1:0,47:32:47:1.00:2	0/1:0,98:32:98:1.00:2	./.	0/1:35,26:33:61:0.426:2	./.
chr12	30868002	rs13656	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,38:31:91:0.422:2	0/1:38,19:31:57:0.333:2	0/1:0,7:27:7:1.00:2	0/1:0,108:30:108:1.00:2	./.	0/1:63,44:29:108:0.411:2	0/1:1,58:30:59:0.983:2	0/1:0,96:30:96:1.00:2	0/1:55,46:31:101:0.455:2	0/1:0,109:30:109:1.00:2	./.
chr12	30872053	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:31:157:0.025:2	./.	./.	./.	./.	./.
chr12	30877391	rs7299800	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,10:30:22:0.455:2	./.	./.	./.	0/1:7,6:29:13:0.462:2	0/1:16,8:30:24:0.333:2	./.	./.
chr12	30881809	rs2304630	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:99,86:29:185:0.465:2	0/1:90,67:28:157:0.427:2	0/1:0,48:28:48:1.00:2	0/1:0,172:29:172:1.00:2	./.	0/1:96,87:29:183:0.475:2	0/1:1,187:29:188:0.995:2	0/1:3,164:29:167:0.982:2	0/1:105,71:30:176:0.403:2	0/1:1,184:29:185:0.995:2	./.
chr12	30888001	rs12146709	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,31:33:76:0.408:2	./.	./.	0/1:43,16:34:59:0.271:2	0/1:39,42:32:81:0.519:2	./.	./.	./.
chr12	30906358	rs17688567	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,61:33:103:0.592:2	0/1:39,27:31:66:0.409:2	./.
chr12	31135478	rs35089	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:30:58:1.00:2	0/1:0,37:29:37:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,114:30:114:1.00:2	0/1:0,144:29:144:1.00:2	0/1:54,68:30:122:0.557:2	0/1:0,136:30:136:1.00:2	0/1:0,108:29:108:1.00:2	0/1:50,60:30:110:0.545:2	0/1:0,89:29:89:1.00:2	0/1:0,75:30:75:1.00:2
chr12	31135579	rs2075333	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:30:18:1.00:2	0/1:0,15:27:15:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,16:28:16:1.00:2	0/1:27,18:28:45:0.400:2	0/1:1,30:26:31:0.968:2	0/1:0,20:30:20:1.00:2	./.	0/1:18,14:29:32:0.438:2	./.
chr12	31237550	rs201573354	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,8:31:62:0.129:2	./.	0/1:175,22:31:197:0.112:2	0/1:185,9:32:194:0.046:2	./.	./.	./.	0/1:186,9:30:195:0.046:2	./.
chr12	31237922	.	G	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,6:32:38:0.158:2	./.	0/1:180,9:29:189:0.048:2	0/1:184,10:27:194:0.052:2	0/1:183,12:31:195:0.062:2	0/1:179,13:33:192:0.068:2	0/1:177,8:31:185:0.043:2	0/1:174,15:31:189:0.079:2	0/1:172,14:31:187:0.075:2
chr12	31237978	rs74087925	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,17:30:175:0.097:2	0/1:135,52:30:189:0.278:2	0/1:127,71:31:198:0.359:2	0/1:127,49:30:177:0.278:2	0/1:150,12:30:162:0.074:2	0/1:131,42:30:174:0.243:2
chr12	31238059	rs200684958	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,3:30:28:0.111:2	0/1:150,15:32:165:0.091:2	0/1:160,24:29:184:0.130:2	0/1:154,21:30:175:0.120:2	0/1:168,20:29:188:0.106:2	0/1:147,16:31:163:0.098:2	0/1:169,14:33:183:0.077:2	0/1:155,16:29:171:0.094:2	0/1:151,23:27:175:0.132:2
chr12	31240862	rs7308754	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,41:32:142:0.289:2	0/1:55,40:32:95:0.421:2	0/1:25,12:32:37:0.324:2	0/1:40,124:33:164:0.756:2	./.	0/1:141,57:31:198:0.288:2	./.	./.	0/1:54,123:33:177:0.695:2	0/1:133,52:33:185:0.281:2	./.
chr12	31240925	rs7308773	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:92,79:30:171:0.462:2	0/1:59,55:30:114:0.482:2	0/1:20,23:30:43:0.535:2	0/1:4,144:30:148:0.973:2	./.	0/1:91,52:30:143:0.364:2	./.	./.	0/1:0,151:31:151:1.00:2	0/1:98,67:29:165:0.406:2	./.
chr12	31242070	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,5:31:183:0.027:2
chr12	31242073	rs201079030	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,6:25:190:0.032:2	./.	./.	./.	./.	0/1:178,6:25:184:0.033:2	0/1:184,6:25:190:0.032:2	./.
chr12	31242081	rs201968272	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,6:26:190:0.032:2
chr12	31242358	rs199585751	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,8:31:193:0.041:2	0/1:181,6:30:187:0.032:2	./.	./.	./.	0/1:182,5:28:187:0.027:2	./.	0/1:187,4:33:191:0.021:2
chr12	31242362	rs3950588	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:189,5:32:194:0.026:2	0/1:182,6:31:188:0.032:2	0/1:185,4:32:189:0.021:2	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2
chr12	31242399	rs3881298	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:94,87:28:182:0.481:2	0/1:78,72:29:150:0.480:2	0/1:34,15:29:49:0.306:2	0/1:2,186:29:188:0.989:2	0/1:190,6:28:196:0.031:2	0/1:96,97:29:193:0.503:2	./.	./.	0/1:0,187:29:187:1.00:2	0/1:102,85:29:187:0.455:2	./.
chr12	31242861	rs200751040	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:39,26:30:65:0.400:2	0/1:163,20:29:183:0.109:2	0/1:149,21:29:170:0.124:2	0/1:153,23:29:176:0.131:2	./.	./.	./.	0/1:135,19:28:154:0.123:2	./.
chr12	31242869	rs201738430	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:144,22:31:166:0.133:2	0/1:141,17:32:158:0.108:2	./.	0/1:166,25:31:191:0.131:2	0/1:150,32:31:182:0.176:2	./.	./.	0/1:164,20:30:184:0.109:2	0/1:146,44:32:190:0.232:2	./.	0/1:148,26:30:174:0.149:2
chr12	31242911	rs199683577	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:26,10:30:36:0.278:2	0/1:176,18:30:194:0.093:2	0/1:157,33:31:190:0.174:2	0/1:173,24:30:197:0.122:2	./.	./.	./.	0/1:168,23:30:191:0.120:2	./.
chr12	31242981	rs3892690	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,6:32:98:0.061:2	./.	./.	0/1:107,9:31:116:0.078:2	./.	./.	0/1:147,10:32:157:0.064:2	0/1:126,12:33:138:0.087:2	./.	0/1:103,9:32:112:0.080:2
chr12	31242999	.	G	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:111,10:30:121:0.083:2	0/1:73,8:31:81:0.099:2	./.	0/1:98,17:31:115:0.148:2	0/1:83,23:30:106:0.217:2	0/1:93,28:31:121:0.231:2	0/1:80,30:30:110:0.273:2	0/1:106,32:31:138:0.232:2	0/1:89,21:33:110:0.191:2	0/1:76,18:31:94:0.191:2	0/1:70,29:32:99:0.293:2
chr12	31243026	.	C	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:81,12:31:93:0.129:2	0/1:51,7:32:58:0.121:2	./.	0/1:84,10:31:94:0.106:2	./.	./.	./.	./.	./.	./.	./.
chr12	31244665	rs201612562	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,9:29:154:0.058:2	./.	0/1:135,27:30:162:0.167:2	0/1:145,16:31:161:0.099:2	0/1:68,6:29:74:0.081:2	0/1:55,9:31:64:0.141:2
chr12	31244689	.	G	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:151,14:31:165:0.085:2	./.	0/1:15,9:31:24:0.375:2	0/1:169,22:31:191:0.115:2	0/1:136,34:31:170:0.200:2	0/1:147,48:31:195:0.246:2	0/1:72,29:31:101:0.287:2	0/1:166,25:31:191:0.131:2	./.	0/1:92,10:32:102:0.098:2	0/1:91,7:31:98:0.071:2
chr12	31244703	rs374684190	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:148,40:31:188:0.213:2	0/1:97,20:33:117:0.171:2	0/1:22,5:33:27:0.185:2	0/1:161,30:32:191:0.157:2	0/1:135,55:32:190:0.289:2	0/1:164,32:32:196:0.163:2	0/1:112,11:31:123:0.089:2	0/1:150,43:32:193:0.223:2	0/1:164,26:34:190:0.137:2	0/1:78,39:32:117:0.333:2	0/1:89,29:33:118:0.246:2
chr12	31244706	.	G	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:174,14:31:188:0.074:2	0/1:111,7:33:119:0.059:2	0/1:22,9:30:31:0.290:2	0/1:167,20:31:187:0.107:2	0/1:153,37:31:190:0.195:2	0/1:145,49:32:194:0.253:2	0/1:96,34:32:130:0.262:2	0/1:168,24:33:192:0.125:2	./.	0/1:115,9:32:124:0.073:2	0/1:119,8:33:127:0.063:2
chr12	31244716	rs35588475	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,53:30:194:0.273:2	./.	./.	0/1:108,76:31:185:0.413:2	./.	./.
chr12	31244784	rs138190731	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:105,32:32:137:0.234:2	0/1:79,14:32:93:0.151:2	./.	0/1:118,11:31:129:0.085:2	./.	./.	./.	./.	./.	./.	./.
chr12	31246188	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,10:30:197:0.051:2	./.	0/1:174,18:29:193:0.094:2	./.	./.
chr12	31246195	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:80,24:30:104:0.231:2	0/1:180,16:32:196:0.082:2	0/1:173,22:31:195:0.113:2	0/1:174,23:32:197:0.117:2	./.	./.	./.	0/1:186,8:32:194:0.041:2	./.
chr12	31246221	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,19:32:182:0.104:2	0/1:135,14:32:149:0.094:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	31247582	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:174,21:32:195:0.108:2	0/1:138,20:32:158:0.127:2	./.	0/1:162,15:33:177:0.085:2	0/1:155,9:31:164:0.055:2	0/1:180,16:31:196:0.082:2	0/1:175,18:32:193:0.093:2	0/1:159,12:33:171:0.070:2	0/1:168,18:33:186:0.097:2	0/1:181,16:33:197:0.081:2	0/1:177,9:32:186:0.048:2
chr12	31247590	.	G	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:170,23:32:193:0.119:2	0/1:132,23:31:155:0.148:2	./.	0/1:124,30:30:155:0.195:2	0/1:152,10:26:163:0.062:2	0/1:167,17:28:184:0.092:2	0/1:157,29:30:186:0.156:2	0/1:164,13:30:177:0.073:2	0/1:140,34:32:174:0.195:2	0/1:171,16:30:188:0.086:2	0/1:169,9:28:179:0.051:2
chr12	31247593	.	C	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:180,13:33:194:0.067:2	0/1:151,8:32:159:0.050:2	0/1:19,5:31:24:0.208:2	0/1:142,21:31:163:0.129:2	0/1:152,14:32:166:0.084:2	0/1:153,29:32:182:0.159:2	0/1:150,31:32:181:0.171:2	0/1:167,12:31:179:0.067:2	./.	0/1:164,19:32:183:0.104:2	0/1:160,11:32:171:0.064:2
chr12	31247682	rs61917225	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:143,52:33:195:0.267:2	0/1:139,54:32:193:0.280:2	0/1:20,8:32:28:0.286:2	0/1:141,54:33:195:0.277:2	0/1:136,62:32:198:0.313:2	0/1:139,55:32:194:0.284:2	0/1:150,49:32:199:0.246:2	0/1:128,70:33:198:0.354:2	0/1:130,64:34:195:0.330:2	0/1:162,34:33:196:0.173:2	0/1:139,54:33:193:0.280:2
chr12	31247692	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:163,30:32:193:0.155:2	0/1:159,35:31:194:0.180:2	./.	0/1:170,21:32:191:0.110:2	./.	./.	./.	./.	./.	./.	./.
chr12	31247705	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:181,11:31:192:0.057:2	./.	./.	0/1:185,7:31:192:0.036:2	./.	0/1:174,17:31:191:0.089:2	./.	./.
chr12	31249244	rs9788048	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:77,19:31:96:0.198:2	0/1:55,16:32:71:0.225:2	./.	0/1:5,53:32:58:0.914:2	0/1:183,15:32:198:0.076:2	0/1:112,38:31:150:0.253:2	0/1:193,7:31:200:0.035:2	./.	0/1:1,48:32:49:0.980:2	0/1:119,22:33:141:0.156:2	./.
chr12	31249319	rs71455621	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:144,51:30:195:0.262:2	0/1:109,51:30:161:0.319:2	0/1:66,12:30:78:0.154:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	31249579	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.	./.	./.
chr12	31249845	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.	./.
chr12	31249861	rs2075322	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,34:29:82:0.415:2	0/1:31,25:30:56:0.446:2	0/1:9,8:31:17:0.471:2	0/1:0,115:30:115:1.00:2	./.	0/1:50,55:30:105:0.524:2	./.	0/1:187,6:28:193:0.031:2	0/1:0,114:30:115:1.00:2	0/1:46,45:30:91:0.495:2	./.
chr12	31250830	rs2911826	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:134,4:33:138:0.029:2	./.	./.	./.	0/1:188,4:33:192:0.021:2	./.	0/1:190,7:30:197:0.036:2	0/1:167,9:31:176:0.051:2	0/1:142,12:32:154:0.078:2	./.	0/1:139,5:27:144:0.035:2
chr12	31250875	rs145461857	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:154,12:33:166:0.072:2	0/1:71,4:33:75:0.053:2	./.	0/1:176,10:35:186:0.054:2	0/1:172,10:32:182:0.055:2	./.	0/1:178,17:32:195:0.087:2	0/1:168,27:33:195:0.138:2	0/1:160,36:33:196:0.184:2	./.	0/1:164,12:33:176:0.068:2
chr12	31253995	rs1046456	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,25:31:53:0.472:2	0/1:15,11:32:26:0.423:2	0/1:2,6:31:8:0.750:2	0/1:1,83:30:84:0.988:2	./.	0/1:45,25:31:70:0.357:2	./.	./.	0/1:0,86:32:86:1.00:2	0/1:27,16:27:43:0.372:2	./.
chr12	31254897	rs201399897	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,7:30:129:0.054:2	0/1:147,6:33:153:0.039:2	0/1:104,9:31:115:0.080:2	0/1:103,4:31:107:0.037:2	./.	0/1:108,12:32:120:0.100:2
chr12	31255227	rs141443776	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,5:27:87:0.057:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	31255383	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:31:105:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2
chr12	31256517	rs140335402	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,30:29:59:0.517:2	0/1:23,20:31:43:0.465:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	31256546	rs1046457	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:29,42:32:71:0.592:2	0/1:23,23:32:46:0.500:2	./.	0/1:0,75:30:77:1.00:2	./.	0/1:54,27:32:81:0.333:2	./.	./.	0/1:1,46:32:47:0.979:2	0/1:41,29:31:70:0.414:2	./.
chr12	31256905	rs1046458	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:37,26:28:63:0.413:2	0/1:23,18:28:41:0.439:2	./.	0/1:0,58:29:58:1.00:2	./.	0/1:37,41:28:78:0.526:2	0/1:71,6:31:77:0.078:2	./.	0/1:0,68:29:68:1.00:2	0/1:28,29:27:57:0.509:2	./.
chr12	31256929	rs56136512	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,12:31:31:0.387:2	./.	./.	./.	./.	./.	./.
chr12	31604928	rs3205175	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,50:30:91:0.549:2	./.	./.	./.	0/1:44,50:30:94:0.532:2
chr12	31604952	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:145,4:33:149:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr12	31605044	rs1056320	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,49:31:99:0.495:2	./.	./.	./.	0/1:85,71:32:156:0.455:2
chr12	31648826	rs4930979	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:32:5:0.800:2	./.	0/1:0,40:31:40:1.00:2	0/1:25,19:31:44:0.432:2	./.	0/1:0,47:31:47:1.00:2	0/1:0,49:32:49:1.00:2	0/1:27,22:31:49:0.449:2	0/1:39,36:32:75:0.480:2
chr12	31820809	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,6:31:198:0.030:2	./.	./.	./.
chr12	31841959	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,3:33:50:0.060:2	./.	./.	./.	./.	./.	./.
chr12	31850283	rs74744848	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:32:10:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	31944691	rs3759294	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,5:32:9:0.556:2	0/1:59,47:32:106:0.443:2	./.	./.	0/1:64,43:31:107:0.402:2	./.	0/1:4,97:33:101:0.960:2	0/1:45,38:32:83:0.458:2	0/1:61,53:32:114:0.465:2
chr12	31944985	rs3759295	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,43:31:85:0.506:2	./.	./.	0/1:69,40:32:109:0.367:2	./.	./.	./.
chr12	32134064	rs7298803	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:37,28:33:66:0.431:2	0/1:20,29:32:49:0.592:2	./.	./.	0/1:32,34:32:66:0.515:2	./.	0/1:27,26:32:53:0.491:2	./.	./.	0/1:28,48:33:76:0.632:2	./.
chr12	32134207	rs2388981	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:32:9:0.556:2	./.	./.	0/1:35,24:31:59:0.407:2	./.	./.	./.	./.	./.
chr12	32134240	rs2388982	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,79:32:79:1.00:2	0/1:49,29:32:78:0.372:2	0/1:0,61:31:61:1.00:2	0/1:35,32:31:67:0.478:2	0/1:0,76:31:76:1.00:2	0/1:53,60:33:113:0.531:2	0/1:26,50:32:76:0.658:2	0/1:52,45:33:97:0.464:2
chr12	32134638	rs2166807	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,21:33:21:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,16:33:16:1.00:2	0/1:6,3:31:9:0.333:2	0/1:0,19:33:19:1.00:2	0/1:3,5:32:8:0.625:2	0/1:0,25:33:25:1.00:2	0/1:5,3:35:8:0.375:2	0/1:0,13:32:13:1.00:2	0/1:0,20:33:20:1.00:2
chr12	32134815	rs16919122	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:40,32:32:72:0.444:2	0/1:18,15:32:33:0.455:2	./.	0/1:49,34:31:83:0.410:2	./.	./.	./.	./.	./.	./.	./.
chr12	32134912	rs77532308	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,37:32:86:0.430:2	./.	./.	./.	./.	./.
chr12	32134926	rs3207618	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,25:31:69:0.362:2	0/1:47,43:31:90:0.478:2
chr12	32134943	rs10771894	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,58:30:58:1.00:2	0/1:0,37:28:37:1.00:2	./.	0/1:3,68:30:71:0.958:2	0/1:38,34:29:72:0.472:2	./.	0/1:30,33:29:63:0.524:2	0/1:37,35:29:72:0.486:2	./.	0/1:25,37:30:62:0.597:2	./.
chr12	32135186	rs3759302	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	0/1:9,4:28:13:0.308:2	./.	./.	./.	./.	./.
chr12	32135441	rs3759301	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:32:25:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,10:32:10:1.00:2	0/1:15,12:30:27:0.444:2	0/1:0,18:32:18:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,37:32:37:1.00:2
chr12	32135938	rs11051718	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:38,16:32:54:0.296:2	0/1:22,13:31:35:0.371:2	./.	./.	0/1:22,32:33:54:0.593:2	./.	0/1:25,34:33:59:0.576:2	./.	./.	0/1:27,20:32:47:0.426:2	./.
chr12	32137447	rs3759300	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,7:31:14:0.500:2	0/1:54,55:33:109:0.505:2	./.	./.	./.	0/1:65,62:31:127:0.488:2	./.	./.	./.
chr12	32137512	rs3759299	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,25:32:47:0.532:2	0/1:18,23:31:41:0.561:2	0/1:3,6:32:9:0.667:2	0/1:33,34:32:67:0.507:2	0/1:18,18:31:36:0.500:2	./.	0/1:35,25:32:60:0.417:2	0/1:33,24:32:57:0.421:2	./.	0/1:17,34:31:51:0.667:2	./.
chr12	32137565	rs1057994	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,19:29:48:0.396:2	./.	./.	./.	./.	./.
chr12	32137852	rs3759297	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,14:30:25:0.560:2	./.	./.	./.	./.	./.
chr12	32138410	rs12827942	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:26,18:33:44:0.409:2	0/1:12,9:31:21:0.429:2	./.	./.	0/1:15,4:29:19:0.211:2	./.	0/1:11,17:31:28:0.607:2	./.	./.	0/1:17,16:29:33:0.485:2	./.
chr12	32481093	rs3748275	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:23,28:32:51:0.549:2	0/1:10,13:31:23:0.565:2	./.	./.	0/1:24,16:27:40:0.400:2	./.	./.	./.	0/1:19,20:32:39:0.513:2	./.	./.
chr12	32481369	rs34447944	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,15:31:54:0.278:2	./.	./.	0/1:30,21:30:51:0.412:2	./.	./.
chr12	32481458	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,6:26:79:0.077:2	./.	./.	./.	./.	./.	./.
chr12	32735236	rs904582	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,46:30:49:0.939:2	0/1:4,25:31:29:0.862:2	0/1:2,3:30:5:0.600:2	0/1:31,35:30:66:0.530:2	0/1:0,43:30:43:1.00:2	0/1:0,56:29:56:1.00:2	./.	0/1:38,37:30:75:0.493:2	0/1:0,59:30:59:1.00:2	0/1:9,24:30:33:0.727:2	0/1:1,60:30:61:0.984:2
chr12	32764184	rs10844253	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,25:32:25:1.00:2	./.	0/1:24,21:31:45:0.467:2	0/1:11,18:31:29:0.621:2	0/1:1,44:31:45:0.978:2	./.	0/1:25,24:31:49:0.490:2	0/1:23,27:32:50:0.540:2	0/1:29,17:30:46:0.370:2	0/1:26,23:31:49:0.469:2
chr12	32777362	rs11052110	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,82:31:83:0.988:2	0/1:0,31:31:31:1.00:2	0/1:3,4:32:7:0.571:2	0/1:44,36:31:80:0.450:2	0/1:37,20:31:57:0.351:2	0/1:0,75:31:75:1.00:2	./.	0/1:48,44:31:92:0.478:2	0/1:58,39:32:97:0.402:2	0/1:30,36:31:66:0.545:2	0/1:62,49:30:111:0.441:2
chr12	32778663	rs144693221	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,36:32:78:0.462:2	./.	./.
chr12	32791796	rs4575368	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,14:32:31:0.452:2	./.	./.	./.	0/1:20,16:33:36:0.444:2	./.	./.
chr12	32793234	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,48:30:91:0.527:2	./.
chr12	32854366	rs10844308	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:31:30:1.00:2	0/1:0,17:29:17:1.00:2	0/1:1,2:33:3:0.667:2	0/1:36,14:30:50:0.280:2	./.	0/1:0,21:29:21:1.00:2	./.	0/1:23,17:30:40:0.425:2	0/1:12,12:30:24:0.500:2	./.	./.
chr12	32860302	rs2272238	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,57:33:57:1.00:2	0/1:0,43:32:43:1.00:2	./.	0/1:43,32:32:75:0.427:2	./.	0/1:1,69:32:70:0.986:2	./.	0/1:36,28:32:65:0.438:2	0/1:49,40:32:89:0.449:2	./.	./.
chr12	32875406	rs10844318	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:29:69:1.00:2	0/1:1,30:29:31:0.968:2	0/1:0,11:29:11:1.00:2	0/1:37,31:30:68:0.456:2	./.	0/1:2,86:29:88:0.977:2	./.	0/1:51,49:30:100:0.490:2	0/1:60,40:29:100:0.400:2	./.	./.
chr12	32896365	rs1059422	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,20:32:20:1.00:2	./.	0/1:35,13:31:48:0.271:2	./.	0/1:0,50:33:50:1.00:2	./.	0/1:15,23:32:38:0.605:2	0/1:37,33:33:70:0.471:2	./.	./.
chr12	32896366	rs112608623	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,41:33:41:1.00:2	0/1:0,20:32:20:1.00:2	./.	0/1:35,13:31:48:0.271:2	./.	0/1:0,50:32:50:1.00:2	./.	0/1:15,23:31:38:0.605:2	0/1:37,33:34:70:0.471:2	./.	./.
chr12	32908237	rs11539445	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,34:27:35:0.971:2	0/1:0,34:30:35:1.00:2	0/1:4,5:29:9:0.556:2	0/1:26,41:30:67:0.612:2	./.	0/1:0,79:29:80:1.00:2	./.	0/1:51,48:30:100:0.485:2	0/1:22,47:30:69:0.681:2	./.	./.
chr12	32908518	rs11539444	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,56:30:59:0.949:2	0/1:1,28:30:30:0.966:2	0/1:4,7:29:11:0.636:2	0/1:38,45:29:83:0.542:2	./.	0/1:0,93:30:93:1.00:2	./.	0/1:67,38:29:105:0.362:2	0/1:47,38:31:85:0.447:2	./.	./.
chr12	32949168	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:32:134:0.030:2	./.	./.	./.	./.
chr12	32994073	rs146882581	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:42,35:32:77:0.455:2	0/1:15,16:31:31:0.516:2	./.	0/1:32,28:32:60:0.467:2	./.	0/1:28,27:31:55:0.491:2	./.	./.	./.	./.	./.
chr12	33021934	rs1046116	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,12:29:32:0.375:2	./.	./.	./.	0/1:30,26:28:56:0.464:2
chr12	33031101	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:176,9:31:185:0.049:2	./.	./.	./.	./.	./.	./.
chr12	33535289	rs10844571	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,60:33:62:0.968:2	0/1:2,40:32:42:0.952:2	./.	0/1:45,34:32:79:0.430:2	0/1:35,29:32:64:0.453:2	0/1:52,33:32:86:0.388:2	0/1:54,27:31:81:0.333:2	0/1:54,30:32:84:0.357:2	./.	./.	./.
chr12	33538179	rs11052670	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	0/1:38,31:32:69:0.449:2
chr12	33579122	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:34:190:0.021:2	./.
chr12	33579297	rs11052695	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,22:31:45:0.489:2	./.	0/1:34,19:31:53:0.358:2	./.	./.	./.	./.
chr12	33579408	rs10844596	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,24:32:37:0.649:2	./.	0/1:21,11:31:32:0.344:2	./.	./.	./.	./.
chr12	34176942	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:177,5:31:182:0.027:2	./.	0/1:191,5:32:196:0.026:2	./.	./.	./.	0/1:189,4:33:193:0.021:2	0/1:191,4:33:195:0.021:2	./.	./.
chr12	34176951	.	A	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:177,4:33:182:0.022:2	0/1:177,6:27:183:0.033:2	./.	0/1:188,6:32:194:0.031:2	./.	0/1:187,8:31:195:0.041:2	0/1:188,7:32:195:0.036:2	0/1:186,10:29:196:0.051:2	0/1:182,8:33:191:0.042:2	0/1:186,7:30:193:0.036:2	0/1:178,6:33:184:0.033:2
chr12	38710769	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:31:90:0.044:2	./.
chr12	38710830	rs148038148	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,35:29:64:0.547:2
chr12	38712142	rs6582584	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,150:33:150:1.00:2	0/1:0,162:32:162:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,173:33:173:1.00:2	0/1:0,180:32:180:1.00:2	0/1:0,187:32:187:1.00:2	0/1:0,165:33:165:1.00:2	0/1:0,180:33:180:1.00:2	0/1:0,189:33:190:1.00:2	0/1:0,175:33:175:1.00:2	0/1:0,192:33:192:1.00:2
chr12	38714082	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.	./.	./.	./.	./.
chr12	38714242	rs4882285	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,30:32:67:0.448:2	./.
chr12	38714351	rs140475027	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,42:32:115:0.365:2	./.	./.	./.	./.	./.	./.
chr12	38715000	rs35518352	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,101:33:102:0.990:2	0/1:0,45:32:45:1.00:2	0/1:13,8:33:21:0.381:2	0/1:4,82:33:86:0.953:2	./.	0/1:47,24:32:71:0.338:2	0/1:4,43:32:47:0.915:2	0/1:1,72:32:73:0.986:2	0/1:62,51:34:113:0.451:2	./.	0/1:66,48:33:115:0.421:2
chr12	39087609	rs3759139	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,98:32:98:1.00:2	0/1:1,57:32:58:0.983:2	0/1:11,9:31:20:0.450:2	0/1:2,124:31:126:0.984:2	./.	0/1:64,45:30:109:0.413:2	0/1:3,90:31:93:0.968:2	0/1:81,60:31:141:0.426:2	0/1:74,54:32:128:0.422:2	./.	0/1:69,56:32:125:0.448:2
chr12	39096664	rs7960616	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:32:73:1.00:2	0/1:1,41:32:42:0.976:2	0/1:2,5:31:7:0.714:2	0/1:3,107:32:110:0.973:2	./.	0/1:54,42:31:96:0.438:2	0/1:4,71:31:75:0.947:2	0/1:49,54:31:103:0.524:2	0/1:74,64:31:138:0.464:2	./.	0/1:83,57:32:140:0.407:2
chr12	39233771	rs3803020	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,29:32:29:1.00:2	0/1:0,16:32:16:1.00:2	./.	0/1:0,38:32:38:1.00:2	0/1:22,17:31:39:0.436:2	0/1:21,19:32:40:0.475:2	0/1:6,16:32:22:0.727:2	0/1:27,24:32:51:0.471:2	./.	./.	0/1:0,69:32:69:1.00:2
chr12	39299239	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,4:32:40:0.100:2	./.	./.	./.	./.	./.	./.
chr12	39695445	rs2271477	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:50,32:33:82:0.390:2	0/1:25,14:33:39:0.359:2	./.	./.	0/1:32,24:32:56:0.429:2	./.	./.	./.	./.	./.	./.
chr12	39709801	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:32:168:0.024:2	./.	./.	./.	./.
chr12	39713776	rs75223821	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,31:31:55:0.564:2	0/1:18,21:32:39:0.538:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	39719683	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,5:29:54:0.093:2	./.	./.	./.	./.	./.	./.
chr12	39724614	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:195,4:33:199:0.020:2	./.	./.	./.	./.	./.	./.
chr12	39726091	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,89:31:198:0.449:2	0/1:61,74:32:135:0.548:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	40001502	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,6:31:88:0.068:2
chr12	40085906	rs73270414	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,47:32:105:0.448:2
chr12	40153884	rs141841078	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:32:56:0.071:2	./.	./.	./.	./.
chr12	40499347	rs7305377	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,16:32:26:0.615:2	0/1:14,19:32:33:0.576:2	./.	0/1:18,14:32:32:0.438:2	0/1:34,45:31:79:0.570:2	0/1:16,19:32:35:0.543:2	0/1:28,24:31:52:0.462:2	./.	./.	./.	./.
chr12	40590585	rs147922178	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,34:31:94:0.366:2	./.	./.	./.	./.	./.
chr12	40619082	rs2256408	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:31:23:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,33:32:33:1.00:2
chr12	40631791	rs10878245	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,36:32:36:1.00:2	0/1:14,6:32:20:0.300:2	0/1:0,42:31:42:1.00:2	./.	0/1:22,10:32:32:0.313:2	./.	0/1:0,28:32:28:1.00:2	0/1:1,39:33:40:0.975:2
chr12	40645257	rs7955902	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,20:31:60:0.333:2	0/1:21,15:30:36:0.417:2	0/1:2,47:31:49:0.959:2	./.	0/1:24,16:32:40:0.400:2	./.	0/1:21,13:32:34:0.382:2	0/1:1,59:32:60:0.983:2
chr12	40657700	rs7308720	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:31:10:0.400:2	./.	0/1:25,13:33:38:0.342:2	./.	./.	./.	./.	./.	./.
chr12	40668469	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,33:31:59:0.559:2	0/1:32,16:31:48:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	40688695	rs7966550	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,38:32:39:0.974:2	0/1:0,26:32:26:1.00:2	./.	./.	0/1:27,13:31:40:0.325:2	./.	0/1:28,15:33:43:0.349:2	0/1:25,27:32:52:0.519:2	0/1:1,62:34:63:0.984:2	./.	./.
chr12	40702911	rs7133914	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:31:12:0.417:2	./.	0/1:54,40:32:94:0.426:2	./.	./.	./.	./.	./.	./.
chr12	40702987	rs11175964	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,13:32:18:0.722:2	./.	0/1:69,103:32:172:0.599:2	./.	./.	./.	./.	./.	./.
chr12	40713834	rs1427263	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,48:31:48:1.00:2	0/1:31,14:31:45:0.311:2	0/1:30,39:31:69:0.565:2	0/1:25,15:31:40:0.375:2	0/1:38,17:31:55:0.309:2	./.	0/1:0,38:32:38:1.00:2	0/1:56,32:31:88:0.364:2
chr12	40713873	rs11176013	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,29:33:29:1.00:2	0/1:21,8:32:29:0.276:2	0/1:23,21:32:44:0.477:2	./.	0/1:19,11:33:30:0.367:2	./.	0/1:1,20:34:21:0.952:2	0/1:22,19:34:41:0.463:2
chr12	40713901	rs11564148	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,19:30:31:0.613:2	./.	0/1:16,12:30:28:0.429:2	./.	0/1:7,6:31:13:0.462:2	./.	0/1:9,7:32:16:0.438:2	0/1:22,11:31:33:0.333:2
chr12	40716260	rs10878371	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,68:29:68:1.00:2	0/1:21,16:27:37:0.432:2	0/1:15,28:30:44:0.651:2	./.	0/1:31,26:29:57:0.456:2	./.	0/1:1,51:27:52:0.981:2	0/1:52,44:28:96:0.458:2
chr12	40742235	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,4:30:85:0.047:2	./.	./.	./.	./.	./.	./.
chr12	40742254	rs10878405	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,20:32:91:0.220:2	./.	0/1:68,30:31:98:0.306:2	./.	0/1:68,39:31:107:0.364:2	./.	0/1:0,77:32:77:1.00:2	0/1:92,66:31:158:0.418:2
chr12	40757330	rs33962975	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,9:32:24:0.375:2	./.	./.	./.	./.
chr12	40758652	rs3761863	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,19:31:19:1.00:2	./.	0/1:18,9:28:27:0.333:2	0/1:13,6:30:19:0.316:2	0/1:26,6:29:32:0.188:2	./.	0/1:0,17:29:17:1.00:2	0/1:0,36:31:36:1.00:2
chr12	40758825	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:32:46:0.087:2	./.	./.	./.	./.
chr12	40805948	rs10878538	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,12:34:21:0.571:2	./.	./.	./.	0/1:9,13:32:22:0.591:2	./.	0/1:5,8:32:13:0.615:2	0/1:25,10:32:35:0.286:2
chr12	40820208	rs11176575	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,7:31:44:0.159:2	./.	0/1:30,26:30:56:0.464:2	./.	0/1:25,16:31:41:0.390:2	./.	0/1:31,15:31:46:0.326:2	0/1:32,29:32:61:0.475:2
chr12	40821176	rs7955308	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:32:26:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,7:31:7:1.00:2	0/1:2,27:31:29:0.931:2	0/1:0,28:31:28:1.00:2	0/1:15,7:31:22:0.318:2	0/1:0,19:31:19:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,33:31:33:1.00:2
chr12	40821839	rs11176584	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,186:32:187:0.995:2	0/1:1,90:32:91:0.989:2	0/1:11,22:31:33:0.667:2	./.	0/1:1,146:31:147:0.993:2	./.	0/1:98,95:31:193:0.492:2	0/1:71,122:31:193:0.632:2	0/1:4,181:32:187:0.978:2	./.	./.
chr12	40821867	rs7958987	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,68:31:176:0.386:2	./.	0/1:115,60:30:175:0.343:2	./.	0/1:112,67:32:179:0.374:2	./.	0/1:96,49:31:145:0.338:2	0/1:79,87:32:166:0.524:2
chr12	40823354	rs11564245	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,31:33:61:0.508:2	./.	./.	./.	./.
chr12	40825487	rs2114567	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,14:32:37:0.378:2	./.	./.	./.	./.	./.	0/1:14,8:32:22:0.364:2	0/1:17,32:32:49:0.653:2
chr12	40826514	rs10506162	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,55:29:139:0.396:2	./.	./.	./.	./.
chr12	40827579	rs11564110	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:2,102:33:104:0.981:2	0/1:1,46:32:47:0.979:2	./.	./.	0/1:0,79:32:79:1.00:2	./.	0/1:50,47:32:97:0.485:2	0/1:85,56:32:141:0.397:2	0/1:4,112:33:116:0.966:2	./.	./.
chr12	40832126	rs10878584	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:31:7:0.571:2	0/1:0,57:32:57:1.00:2	0/1:35,41:32:76:0.539:2	0/1:41,47:31:88:0.534:2	0/1:30,39:32:69:0.565:2	0/1:29,33:33:62:0.532:2	./.	0/1:38,17:31:55:0.309:2	0/1:50,55:31:105:0.524:2
chr12	40832161	rs11176635	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,2:34:4:0.500:2	0/1:0,27:33:27:1.00:2	0/1:14,16:31:30:0.533:2	0/1:20,22:32:42:0.524:2	0/1:20,12:33:32:0.375:2	0/1:16,23:33:39:0.590:2	./.	0/1:22,10:33:33:0.313:2	0/1:30,25:33:55:0.455:2
chr12	40834376	rs10878592	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,88:33:88:1.00:2	0/1:42,30:32:72:0.417:2	0/1:71,37:32:108:0.343:2	0/1:45,23:31:68:0.338:2	0/1:80,36:33:116:0.310:2	./.	0/1:68,33:32:101:0.327:2	0/1:99,65:32:164:0.396:2
chr12	40834955	rs10784618	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:31,15:32:46:0.326:2	0/1:2,150:32:152:0.987:2	0/1:77,91:32:168:0.542:2	0/1:78,86:31:164:0.524:2	0/1:102,82:32:184:0.446:2	0/1:84,94:32:178:0.528:2	./.	0/1:84,87:32:171:0.509:2	0/1:98,87:32:185:0.470:2
chr12	40835734	rs7966110	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,12:32:22:0.545:2	0/1:2,170:33:172:0.988:2	0/1:87,48:32:135:0.356:2	0/1:57,103:33:160:0.644:2	0/1:78,62:33:140:0.443:2	0/1:104,79:33:183:0.432:2	./.	0/1:81,84:33:165:0.509:2	0/1:81,112:33:193:0.580:2
chr12	40835749	rs11176655	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,57:29:153:0.373:2	./.	./.	./.	./.	0/1:117,71:29:188:0.378:2
chr12	40838216	rs10784621	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,5:31:12:0.417:2	0/1:1,121:30:122:0.992:2	0/1:102,78:30:180:0.433:2	0/1:61,63:30:124:0.508:2	0/1:91,92:30:183:0.503:2	0/1:102,77:29:179:0.430:2	./.	0/1:47,53:29:100:0.530:2	0/1:103,67:30:170:0.394:2
chr12	40840325	rs10878597	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,6:33:15:0.400:2	0/1:0,154:33:154:1.00:2	0/1:50,44:33:94:0.468:2	0/1:83,66:32:150:0.443:2	0/1:91,85:32:176:0.483:2	0/1:86,101:33:187:0.540:2	./.	0/1:64,64:33:128:0.500:2	0/1:81,66:33:147:0.449:2
chr12	40841938	rs11176682	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,14:32:14:1.00:2	./.	./.	./.	0/1:2,6:32:8:0.750:2	./.	./.	0/1:4,3:33:7:0.429:2
chr12	40843504	rs12581232	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,32:29:81:0.395:2	./.	./.	./.	./.	0/1:59,60:30:119:0.504:2
chr12	40852535	rs17128233	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,9:34:12:0.750:2	./.
chr12	40857943	rs2933353	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,34:32:35:0.971:2	0/1:0,20:30:20:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,29:32:29:1.00:2	0/1:12,11:32:23:0.478:2	0/1:0,40:32:40:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,24:32:24:1.00:2	0/1:18,25:32:43:0.581:2
chr12	40859775	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,6:31:58:0.103:2	./.	./.	./.	./.
chr12	40903021	rs73110097	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:122,4:31:126:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr12	40903026	rs73110101	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:126,4:31:130:0.031:2	./.	./.	./.	./.	./.	0/1:63,41:32:104:0.394:2	./.
chr12	40903076	rs117252799	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,35:29:85:0.412:2	./.
chr12	40904843	rs1838352	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,35:30:37:0.972:2	0/1:0,23:29:23:1.00:2	./.	./.	0/1:13,25:30:38:0.658:2	./.	0/1:26,9:32:35:0.257:2	0/1:31,20:30:51:0.392:2	0/1:2,56:30:58:0.966:2	0/1:15,12:28:27:0.444:2	./.
chr12	40925908	rs7139187	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,121:32:121:1.00:2	0/1:1,51:32:52:0.981:2	0/1:5,3:32:9:0.375:2	0/1:1,89:33:90:0.989:2	0/1:46,35:32:81:0.432:2	0/1:131,4:33:136:0.030:2	0/1:29,36:33:65:0.554:2	0/1:0,105:32:105:1.00:2	0/1:0,90:33:90:1.00:2	0/1:0,58:33:58:1.00:2	0/1:47,51:33:99:0.520:2
chr12	40929013	rs61730702	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,29:32:72:0.403:2	./.	./.	./.	./.	./.	./.
chr12	40930709	rs7971316	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,13:33:31:0.419:2	0/1:10,5:32:15:0.333:2	./.	0/1:0,23:33:23:1.00:2	0/1:11,11:32:22:0.500:2	./.	0/1:13,16:33:29:0.552:2	0/1:0,25:32:25:1.00:2	0/1:0,31:34:31:1.00:2	0/1:0,25:33:25:1.00:2	0/1:21,20:34:41:0.488:2
chr12	40931655	rs76684015	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,84:31:86:0.977:2	0/1:67,6:30:73:0.082:2	./.	./.	0/1:57,50:31:107:0.467:2	./.	0/1:55,26:31:81:0.321:2	0/1:34,35:32:69:0.507:2
chr12	40932661	rs11177108	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,16:31:17:0.941:2	./.	./.	./.	0/1:17,12:30:29:0.414:2	./.	0/1:12,7:31:19:0.368:2	0/1:19,15:30:34:0.441:2
chr12	40935632	rs11177134	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,86:33:89:0.966:2	./.	./.	./.	0/1:55,40:33:95:0.421:2	./.	0/1:60,39:32:99:0.394:2	0/1:61,54:33:115:0.470:2
chr12	40938458	rs17128403	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,44:33:105:0.419:2	0/1:26,24:31:50:0.480:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	40939200	rs182952935	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,17:32:46:0.370:2	./.	./.	./.	./.	./.	./.
chr12	40942033	rs10784705	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:52,43:33:95:0.453:2	0/1:40,26:31:66:0.394:2	0/1:2,5:33:7:0.714:2	./.	0/1:37,22:32:59:0.373:2	./.	0/1:41,36:33:77:0.468:2	0/1:58,66:32:124:0.532:2	0/1:0,85:33:86:1.00:2	0/1:53,49:32:102:0.480:2	./.
chr12	40943970	rs1492316	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,17:32:47:0.362:2	0/1:14,13:32:27:0.481:2	./.	0/1:0,49:31:49:1.00:2	0/1:28,14:30:42:0.333:2	./.	0/1:18,31:31:49:0.633:2	0/1:1,44:31:45:0.978:2	0/1:0,54:32:54:1.00:2	0/1:0,43:33:43:1.00:2	0/1:42,40:32:82:0.488:2
chr12	40950944	rs73115401	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,13:33:28:0.481:2	./.
chr12	40951596	rs3751167	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,78:30:79:0.987:2	./.	./.	./.	0/1:68,35:29:103:0.340:2	./.	0/1:35,44:30:80:0.557:2	0/1:73,66:29:139:0.475:2
chr12	40951605	rs3751168	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,80:31:81:0.988:2	./.	./.	./.	0/1:68,39:30:107:0.364:2	./.	0/1:36,45:31:81:0.556:2	0/1:79,67:32:146:0.459:2
chr12	40951950	rs3751172	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,47:31:116:0.405:2	0/1:41,25:31:66:0.379:2	0/1:15,10:31:25:0.400:2	0/1:0,98:31:98:1.00:2	0/1:66,21:30:87:0.241:2	./.	0/1:72,32:31:104:0.308:2	0/1:1,94:30:95:0.989:2	0/1:1,94:32:95:0.989:2	0/1:0,77:31:77:1.00:2	0/1:80,75:30:155:0.484:2
chr12	40951961	rs3751173	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:67,42:33:109:0.385:2	0/1:40,24:33:64:0.375:2	0/1:15,9:33:24:0.375:2	./.	0/1:67,22:33:89:0.247:2	./.	0/1:70,29:33:99:0.293:2	0/1:48,47:33:95:0.495:2	0/1:1,86:34:87:0.989:2	0/1:36,39:33:75:0.520:2	./.
chr12	41330611	rs935105	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,90:31:91:0.989:2	0/1:0,50:30:50:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	41337435	rs1056019	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,107:32:107:1.00:2	0/1:0,61:31:61:1.00:2	0/1:12,6:31:18:0.333:2	0/1:111,73:30:184:0.397:2	0/1:3,89:31:92:0.967:2	0/1:0,114:30:114:1.00:2	./.	0/1:0,116:31:116:1.00:2	0/1:77,76:32:153:0.497:2	0/1:0,107:31:108:1.00:2	0/1:0,133:31:133:1.00:2
chr12	41374862	rs2229930	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,19:30:38:0.500:2	./.	./.	0/1:33,35:31:68:0.515:2	./.	./.	./.
chr12	41946539	rs285584	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,19:32:43:0.442:2	./.	./.	./.	./.	./.	./.
chr12	41966306	rs12298745	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,42:32:91:0.462:2	./.	./.	./.
chr12	41967079	rs11181011	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,8:29:19:0.421:2	./.	./.
chr12	41967677	rs3747556	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,89:33:89:1.00:2	./.	./.	./.	./.
chr12	42481732	rs7972986	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,7:30:14:0.500:2	0/1:10,13:30:23:0.565:2	./.	./.	0/1:10,7:32:17:0.412:2	./.	./.
chr12	42503467	rs7312933	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,12:28:31:0.387:2	0/1:7,4:29:11:0.364:2	0/1:0,4:29:4:1.00:2	0/1:20,19:29:39:0.487:2	./.	./.	0/1:0,17:28:17:1.00:2	0/1:19,15:29:34:0.441:2	0/1:19,30:29:49:0.612:2	0/1:19,20:29:39:0.513:2	./.
chr12	42512817	rs201566551	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:42,7:32:49:0.143:2	0/1:3,6:32:9:0.667:2	0/1:116,10:33:126:0.079:2	0/1:56,6:31:62:0.097:2	0/1:91,11:32:102:0.108:2	0/1:99,9:32:108:0.083:2	0/1:103,14:32:117:0.120:2	0/1:108,11:32:119:0.092:2	0/1:71,13:32:84:0.155:2	0/1:138,14:33:152:0.092:2
chr12	42512830	rs76740071	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:105,5:33:110:0.045:2	0/1:50,13:32:63:0.206:2	0/1:6,6:31:12:0.500:2	0/1:132,14:32:146:0.096:2	0/1:84,10:31:94:0.106:2	0/1:109,20:30:129:0.155:2	0/1:125,16:30:142:0.113:2	0/1:126,25:31:151:0.166:2	0/1:131,13:31:144:0.090:2	0/1:77,26:31:103:0.252:2	0/1:160,15:32:175:0.086:2
chr12	42512844	rs78707986	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:129,7:31:136:0.051:2	0/1:57,16:32:73:0.219:2	0/1:5,6:32:11:0.545:2	0/1:154,25:32:179:0.140:2	0/1:96,11:30:107:0.103:2	0/1:132,28:32:160:0.175:2	0/1:145,21:32:166:0.127:2	0/1:150,31:32:181:0.171:2	0/1:156,22:33:178:0.124:2	0/1:99,32:33:132:0.244:2	0/1:158,17:32:175:0.097:2
chr12	42512910	rs137952794	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:161,11:30:172:0.064:2	0/1:79,23:31:102:0.225:2	./.	0/1:149,24:31:173:0.139:2	0/1:146,17:30:163:0.104:2	0/1:134,37:30:171:0.216:2	0/1:149,23:31:172:0.134:2	0/1:142,29:31:171:0.170:2	0/1:156,11:30:167:0.066:2	0/1:139,37:30:177:0.210:2	0/1:147,17:31:164:0.104:2
chr12	42512917	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,66:33:173:0.382:2	0/1:70,32:33:102:0.314:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	42512924	rs147442957	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:164,9:30:174:0.052:2	0/1:81,20:31:101:0.198:2	./.	0/1:139,20:30:159:0.126:2	0/1:134,13:30:147:0.088:2	0/1:132,27:30:159:0.170:2	0/1:132,16:30:148:0.108:2	0/1:125,19:30:144:0.132:2	0/1:149,9:28:158:0.057:2	0/1:134,23:29:157:0.146:2	0/1:156,18:29:174:0.103:2
chr12	42512938	rs200822565	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:154,7:32:161:0.043:2	0/1:80,16:32:97:0.167:2	./.	0/1:119,12:32:131:0.092:2	0/1:118,12:32:130:0.092:2	0/1:111,20:32:131:0.153:2	0/1:114,8:32:122:0.066:2	0/1:117,13:32:130:0.100:2	0/1:129,6:32:135:0.044:2	0/1:137,17:32:154:0.110:2	0/1:172,15:32:187:0.080:2
chr12	42554505	rs1059360	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:43,39:33:82:0.476:2	0/1:30,21:32:51:0.412:2	0/1:15,6:32:21:0.286:2	./.	0/1:49,34:32:83:0.410:2	./.	0/1:1,103:32:104:0.990:2	./.	0/1:58,56:33:114:0.491:2	0/1:42,41:32:83:0.494:2	0/1:70,46:32:116:0.397:2
chr12	42554572	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:31:114:0.035:2	./.	./.	./.
chr12	42707519	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,3:33:58:0.052:2	./.	./.
chr12	42717811	rs17091074	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:31:10:0.400:2	0/1:31,23:31:54:0.426:2	0/1:29,18:31:47:0.383:2	0/1:49,33:31:82:0.402:2	./.	0/1:40,39:31:79:0.494:2	0/1:37,12:32:49:0.245:2	./.	./.
chr12	42839836	rs1669885	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:34:30:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,29:31:29:1.00:2
chr12	42854205	rs3747562	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,50:30:86:0.581:2	0/1:27,15:27:42:0.357:2	./.	0/1:29,46:28:75:0.613:2	0/1:34,28:28:62:0.452:2	0/1:40,55:29:95:0.579:2	./.	0/1:59,34:28:93:0.366:2	./.	0/1:48,32:29:80:0.400:2	0/1:51,33:29:84:0.393:2
chr12	42854208	rs3747563	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:36,49:33:86:0.576:2	0/1:28,15:33:43:0.349:2	./.	0/1:33,47:32:80:0.588:2	./.	0/1:43,55:32:98:0.561:2	./.	0/1:61,34:32:95:0.358:2	./.	0/1:51,29:33:80:0.363:2	0/1:49,33:32:82:0.402:2
chr12	42858366	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,6:30:149:0.040:2	./.
chr12	43769228	rs10506226	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,4:31:11:0.364:2	0/1:64,52:30:116:0.448:2	./.	./.	0/1:51,29:30:80:0.363:2	./.	./.	./.	0/1:70,57:31:127:0.449:2
chr12	43769276	rs10880473	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,4:33:13:0.308:2	0/1:68,58:33:126:0.460:2	./.	./.	0/1:52,32:32:84:0.381:2	./.	./.	./.	0/1:85,54:33:140:0.388:2
chr12	43771242	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:31:95:0.042:2	./.
chr12	43822171	rs7310011	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,11:32:30:0.367:2	0/1:80,74:31:154:0.481:2	./.	./.	./.	./.	./.	./.	./.
chr12	43826204	rs7297737	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:31:5:0.800:2	0/1:61,37:32:98:0.378:2	./.	./.	./.	./.	./.	./.	./.
chr12	43828141	rs7302446	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,10:31:22:0.455:2	0/1:59,68:32:127:0.535:2	./.	./.	./.	./.	./.	./.	./.
chr12	43860526	rs11182088	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,28:30:67:0.418:2	./.	0/1:29,10:30:39:0.256:2	0/1:15,13:30:28:0.464:2	0/1:33,30:29:63:0.476:2	0/1:40,38:31:78:0.487:2	./.	./.
chr12	44130262	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:32:163:0.025:2	./.	./.	./.	./.	./.
chr12	44148259	rs1057190	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,48:32:108:0.444:2	./.	0/1:47,42:33:89:0.472:2	./.	./.	./.
chr12	44172057	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,46:31:118:0.390:2	./.	./.	./.	./.	./.
chr12	44177446	rs11182263	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,14:31:36:0.389:2	./.	./.	./.	./.	./.	./.	./.
chr12	44180295	rs4251545	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,39:31:121:0.322:2	./.	0/1:80,77:31:157:0.490:2	./.	./.	./.
chr12	44189490	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,5:32:59:0.085:2	./.	./.	./.	./.	./.	./.
chr12	44190828	rs201203866	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,5:30:109:0.046:2	./.	./.	./.	./.	./.
chr12	44191625	rs12829856	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,51:31:51:1.00:2	./.	0/1:23,21:32:44:0.477:2	0/1:31,20:32:51:0.392:2	./.	./.
chr12	44198321	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,6:32:111:0.054:2	./.	./.	0/1:158,4:33:162:0.025:2
chr12	45097538	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:33:139:0.029:2	./.	./.
chr12	45108480	rs17574839	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,39:32:86:0.459:2	./.	./.	./.	./.	./.
chr12	45269284	rs7295923	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,59:30:61:0.983:2	0/1:1,36:31:37:0.973:2	0/1:3,7:28:10:0.700:2	./.	0/1:37,35:30:72:0.486:2	0/1:3,109:30:112:0.973:2	0/1:28,46:30:74:0.622:2	./.	./.	0/1:0,54:30:54:1.00:2	./.
chr12	45269317	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:32:103:0.039:2	./.	./.
chr12	45269320	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:33:139:0.029:2	./.	./.	./.	./.	./.
chr12	45307633	rs374144	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,43:30:67:0.642:2	0/1:32,15:28:47:0.319:2	./.	0/1:24,16:31:40:0.400:2	0/1:29,32:28:61:0.525:2	0/1:43,44:30:87:0.506:2	./.	./.
chr12	45410075	rs1224442	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:29:63:1.00:2	0/1:0,34:28:34:1.00:2	0/1:4,3:28:7:0.429:2	0/1:30,27:29:57:0.474:2	0/1:0,55:28:55:1.00:2	0/1:0,51:28:51:1.00:2	0/1:0,50:29:50:1.00:2	0/1:34,33:27:67:0.493:2	0/1:37,29:28:66:0.439:2	0/1:0,44:28:44:1.00:2	./.
chr12	45410155	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:125,4:32:129:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr12	45417666	rs2731038	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:29:22:1.00:2	0/1:0,25:28:25:1.00:2	0/1:0,4:29:4:1.00:2	0/1:15,18:29:33:0.545:2	0/1:0,21:29:21:1.00:2	0/1:0,26:27:26:1.00:2	0/1:1,15:29:16:0.938:2	0/1:14,14:28:28:0.500:2	0/1:15,18:28:33:0.545:2	0/1:0,26:29:26:1.00:2	./.
chr12	45567119	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,5:31:101:0.050:2	./.	./.	0/1:144,4:33:148:0.027:2	./.
chr12	45567478	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,7:30:195:0.036:2	0/1:142,7:28:149:0.047:2	./.	0/1:192,6:31:198:0.030:2	0/1:189,8:31:197:0.041:2	0/1:191,6:30:197:0.030:2	./.	./.
chr12	45567853	rs112846478	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,78:32:161:0.484:2
chr12	45568299	rs73279272	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:31:108:0.037:2	./.	./.	./.	./.	./.
chr12	45568319	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:30:107:0.037:2	./.	./.	./.	./.	./.
chr12	45782052	rs142960268	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,60:32:112:0.536:2	./.	./.	./.
chr12	46205275	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:33:97:0.041:2	./.	./.	./.
chr12	46230652	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:34:175:0.023:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	46242691	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:31:73:0.055:2	./.	./.	./.	./.	./.
chr12	46244784	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:32:155:0.026:2	./.	./.	./.	./.
chr12	46320944	rs28930670	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,46:32:112:0.411:2
chr12	46321514	rs7315731	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,9:31:19:0.474:2	0/1:10,13:31:23:0.565:2	./.	0/1:0,17:31:17:1.00:2	0/1:12,15:30:27:0.556:2	0/1:0,43:32:43:1.00:2	./.	./.
chr12	46322035	rs192115019	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,55:32:100:0.550:2	./.	./.	./.	./.
chr12	46322449	rs10880868	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,70:32:143:0.490:2	0/1:114,71:31:185:0.384:2	0/1:96,100:32:196:0.510:2	./.	./.
chr12	46349995	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:33:53:0.075:2	./.	./.
chr12	46367939	rs11183268	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,13:31:19:0.684:2	0/1:29,27:31:56:0.482:2	0/1:39,21:31:60:0.350:2	./.	0/1:2,29:31:31:0.935:2	0/1:44,34:31:78:0.436:2	0/1:0,77:32:77:1.00:2	./.	./.
chr12	46367944	rs11183269	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:33,36:33:69:0.522:2	0/1:14,25:32:39:0.641:2	./.	./.	0/1:21,38:32:59:0.644:2	0/1:36,44:32:80:0.550:2	./.	0/1:37,41:33:78:0.526:2	./.	./.	0/1:3,112:33:115:0.974:2
chr12	46591776	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:111,4:30:115:0.035:2	./.	./.	./.	./.	./.	./.
chr12	46758462	rs61748367	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,9:32:41:0.220:2	./.	./.	./.	./.
chr12	46758494	rs2307061	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,10:33:27:0.370:2	0/1:7,4:32:11:0.364:2	./.	./.	0/1:23,20:32:43:0.465:2	0/1:0,36:33:36:1.00:2	./.	0/1:0,33:32:33:1.00:2	./.	0/1:35,17:32:52:0.327:2	0/1:37,18:32:55:0.327:2
chr12	46761092	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,5:29:197:0.026:2
chr12	46761127	rs10880959	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:93,52:32:145:0.359:2	0/1:59,40:32:99:0.404:2	0/1:1,17:29:18:0.944:2	./.	0/1:55,39:31:94:0.415:2	0/1:1,133:31:134:0.993:2	./.	0/1:0,121:32:121:1.00:2	./.	0/1:87,78:32:165:0.473:2	0/1:94,76:32:170:0.447:2
chr12	47168898	rs180414	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,110:32:110:1.00:2	0/1:0,45:33:45:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,110:32:110:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,120:32:120:1.00:2	0/1:0,127:32:127:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,116:32:116:1.00:2
chr12	47181746	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,4:31:76:0.053:2	./.	./.	./.	./.	./.	./.
chr12	47182360	rs201596258	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,17:32:45:0.378:2	./.	./.	./.	./.
chr12	47471439	rs2269828	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:110,81:32:191:0.424:2	0/1:95,91:32:186:0.489:2	./.	0/1:83,114:32:197:0.579:2	./.	0/1:2,191:32:193:0.990:2	0/1:99,93:32:192:0.484:2	0/1:5,185:33:190:0.974:2	0/1:1,189:33:190:0.995:2	0/1:98,95:33:193:0.492:2	0/1:0,188:33:188:1.00:2
chr12	47630195	rs147692732	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,87:30:181:0.481:2	./.	./.	./.	./.	./.	./.	./.
chr12	48090118	rs12368459	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,48:33:100:0.480:2	./.	./.	./.	./.	./.	./.	./.
chr12	48111368	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:32:94:0.043:2	./.	./.	./.	./.
chr12	48111948	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:33:103:0.039:2	./.	./.
chr12	48137359	rs140273815	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,46:28:96:0.479:2	./.	./.	./.
chr12	48140583	rs111716416	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,28:26:62:0.459:2
chr12	48142636	rs12422983	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,7:30:9:0.778:2	0/1:55,43:31:99:0.439:2	./.	0/1:78,67:30:145:0.462:2	0/1:66,48:31:114:0.421:2	./.	0/1:0,101:32:101:1.00:2	0/1:36,48:32:84:0.571:2	0/1:55,27:31:82:0.329:2
chr12	48144925	rs2016123	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:30:28:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,44:30:44:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,37:31:37:1.00:2
chr12	48151822	rs11168230	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:32:11:1.00:2	0/1:45,21:32:66:0.318:2	./.	0/1:45,32:32:77:0.416:2	0/1:28,15:30:43:0.349:2	0/1:50,23:31:73:0.315:2	0/1:0,48:33:48:1.00:2	0/1:42,22:32:64:0.344:2	0/1:25,15:32:40:0.375:2
chr12	48152352	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,4:31:35:0.114:2	./.	./.	./.	./.	./.	./.	./.
chr12	48174275	rs59205218	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	./.	./.	./.	./.	0/1:57,43:31:100:0.430:2	0/1:42,44:31:86:0.512:2
chr12	48174351	rs199616405	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,8:12:21:0.381:2	./.	./.	./.	./.	./.	./.
chr12	48174641	rs7964310	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	./.	0/1:11,8:29:19:0.421:2	0/1:17,3:33:20:0.150:2
chr12	48177906	rs7306788	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:30:9:0.444:2	./.	./.	./.	./.	./.	./.	0/1:18,40:30:58:0.690:2	0/1:32,40:29:72:0.556:2
chr12	48181849	rs79823754	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,13:32:18:0.722:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	48188589	rs146168730	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,30:30:43:0.698:2	./.	./.	./.	./.	./.	./.
chr12	48190044	rs11831883	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,40:32:66:0.606:2	0/1:24,22:32:46:0.478:2	0/1:5,8:31:13:0.615:2	0/1:1,97:31:98:0.990:2	./.	0/1:47,68:30:115:0.591:2	./.	0/1:51,73:30:124:0.589:2	./.	0/1:39,28:32:67:0.418:2	0/1:30,24:31:54:0.444:2
chr12	48192752	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,37:31:70:0.529:2	./.	./.
chr12	48238757	rs731236	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:31:14:0.571:2	./.	./.	./.	0/1:2,78:30:80:0.975:2	./.	0/1:48,30:30:78:0.385:2	./.	0/1:30,18:30:48:0.375:2
chr12	48250935	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:33:112:0.036:2	0/1:99,4:31:103:0.039:2	./.
chr12	48272840	rs2228572	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,8:31:29:0.276:2
chr12	48272895	rs2228570	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:30:33:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,29:31:29:1.00:2	./.	0/1:25,9:30:34:0.265:2	0/1:15,24:31:39:0.615:2	0/1:0,42:31:43:1.00:2	./.	0/1:0,18:30:18:1.00:2	0/1:7,12:30:19:0.632:2
chr12	48358203	rs35299693	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,33:33:63:0.524:2	./.	./.	./.
chr12	48359984	rs2286025	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,14:32:23:0.609:2	./.	./.	./.	./.	./.	0/1:83,76:32:160:0.478:2	0/1:62,57:32:119:0.479:2	./.
chr12	48367976	rs2070739	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,24:30:40:0.600:2	./.	./.	./.	./.	./.	0/1:109,87:32:196:0.444:2	0/1:110,76:32:186:0.409:2	./.
chr12	48368085	rs12721379	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,57:33:141:0.407:2	./.	./.
chr12	48371115	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:32:140:0.029:2	./.	./.	./.
chr12	48373798	rs41272029	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,25:32:61:0.410:2	./.	./.	./.	./.	./.	./.
chr12	48375568	rs1635553	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,24:30:55:0.436:2	0/1:24,19:29:43:0.442:2	0/1:3,5:31:8:0.625:2	0/1:55,45:31:100:0.450:2	0/1:66,44:29:110:0.400:2	./.	0/1:51,38:30:89:0.427:2	0/1:74,43:30:117:0.368:2	0/1:38,66:30:104:0.635:2	./.	./.
chr12	48375965	rs2276457	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,10:32:20:0.500:2	0/1:5,8:31:13:0.615:2	./.	0/1:14,5:33:19:0.263:2	0/1:5,5:29:10:0.500:2	./.	0/1:16,14:32:30:0.467:2	0/1:5,16:32:21:0.762:2	0/1:11,4:33:15:0.267:2	./.	./.
chr12	48376291	rs2276454	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,18:30:45:0.400:2	0/1:10,15:30:25:0.600:2	./.	0/1:45,15:30:60:0.250:2	0/1:44,26:31:71:0.371:2	./.	0/1:48,34:31:82:0.415:2	0/1:52,38:30:90:0.422:2	0/1:30,16:31:46:0.348:2	./.	./.
chr12	48380682	rs10875714	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:35,14:31:49:0.286:2	0/1:12,11:32:23:0.478:2	./.	0/1:34,31:31:65:0.477:2	./.	./.	0/1:22,24:31:46:0.522:2	./.	0/1:23,21:32:44:0.477:2	./.	0/1:48,26:31:74:0.351:2
chr12	48387607	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,9:19:85:0.107:2	./.
chr12	48389023	rs10875716	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,23:31:52:0.451:2	./.	0/1:2,43:31:45:0.956:2	0/1:34,18:32:52:0.346:2	0/1:28,27:30:55:0.491:2	0/1:36,27:32:63:0.429:2	0/1:25,10:32:35:0.286:2	0/1:22,27:31:49:0.551:2
chr12	48389643	rs1034762	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,60:33:122:0.492:2	0/1:33,42:32:75:0.560:2	0/1:8,10:32:18:0.556:2	0/1:0,155:32:155:1.00:2	0/1:2,150:32:152:0.987:2	0/1:0,155:32:155:1.00:2	0/1:0,156:33:156:1.00:2	0/1:2,134:32:136:0.985:2	0/1:0,158:34:158:1.00:2	0/1:88,65:32:153:0.425:2	0/1:1,157:33:158:0.994:2
chr12	48391416	rs3737548	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:14,19:30:34:0.576:2	0/1:12,8:31:20:0.400:2	./.	0/1:15,32:29:47:0.681:2	./.	./.	0/1:19,16:31:35:0.457:2	./.	0/1:17,26:30:43:0.605:2	./.	0/1:24,26:29:50:0.520:2
chr12	48391657	rs34392760	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,14:30:43:0.326:2	./.	./.	./.	./.
chr12	48398080	rs3803183	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,14:30:38:0.368:2	0/1:9,7:31:16:0.438:2	0/1:6,9:30:15:0.600:2	0/1:0,51:29:51:1.00:2	0/1:0,64:29:64:1.00:2	0/1:0,62:29:62:1.00:2	0/1:2,27:29:29:0.931:2	0/1:2,60:29:62:0.968:2	0/1:0,37:30:37:1.00:2	0/1:24,19:30:43:0.442:2	0/1:0,34:30:34:1.00:2
chr12	48477422	rs886588	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,4:34:11:0.364:2	0/1:53,39:32:92:0.424:2	./.	./.	0/1:27,48:33:75:0.640:2	./.	0/1:45,64:34:109:0.587:2	./.	./.
chr12	48477492	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,30:32:83:0.361:2
chr12	48526659	rs2228501	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,42:33:93:0.452:2	./.	./.	./.
chr12	48526712	rs2228500	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,8:31:17:0.471:2	0/1:93,82:31:175:0.469:2	./.	./.	0/1:110,86:31:196:0.439:2	./.	0/1:101,60:32:161:0.373:2	./.	./.
chr12	48526719	rs11552507	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,59:32:124:0.476:2	./.
chr12	48527186	rs1049392	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:78,83:33:161:0.516:2	0/1:47,57:33:104:0.548:2	./.	./.	0/1:97,78:33:175:0.446:2	./.	./.	./.	./.	./.	0/1:110,78:33:188:0.415:2
chr12	48531545	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:31:140:0.029:2	./.	./.	./.	./.
chr12	48534572	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:34:135:0.030:2	./.	./.	./.	./.	./.
chr12	48534650	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:33:100:0.040:2	./.	./.
chr12	48537616	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:33:148:0.027:2	./.
chr12	48538908	rs41291971	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,30:31:79:0.380:2	./.	./.	./.
chr12	48539482	rs8716	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,18:32:41:0.439:2	0/1:28,13:31:41:0.317:2	0/1:2,46:29:48:0.958:2	0/1:30,14:30:44:0.318:2	0/1:26,21:31:47:0.447:2	0/1:26,20:32:46:0.435:2	0/1:20,15:30:35:0.429:2	0/1:27,22:32:49:0.449:2
chr12	48543237	rs75959434	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,80:32:161:0.497:2	./.	./.	./.	./.
chr12	48543584	rs3936179	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,47:32:96:0.490:2	./.	./.	./.
chr12	48578325	rs10783231	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:29:2:1.00:2	0/1:0,11:27:11:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,6:27:6:1.00:2	./.	./.	0/1:2,3:28:5:0.600:2	./.
chr12	48578442	rs73304926	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:7,9:29:16:0.563:2	0/1:7,7:31:14:0.500:2	./.	./.	0/1:14,8:28:22:0.364:2	./.	./.	./.	./.	./.	0/1:15,12:29:27:0.444:2
chr12	48578631	rs7486941	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,33:29:60:0.550:2	0/1:34,36:29:71:0.514:2	0/1:0,49:29:49:1.00:2	0/1:32,50:30:82:0.610:2	0/1:33,36:29:69:0.522:2	0/1:30,18:29:48:0.375:2	0/1:27,16:30:43:0.372:2	0/1:33,23:29:56:0.411:2
chr12	48578809	rs7485057	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,14:32:26:0.538:2	0/1:12,6:32:18:0.333:2	0/1:0,5:32:5:1.00:2	0/1:0,37:33:37:1.00:2	0/1:1,20:32:21:0.952:2	0/1:0,26:33:26:1.00:2	0/1:1,12:32:13:0.923:2	0/1:13,12:33:25:0.480:2	0/1:0,32:34:32:1.00:2	0/1:16,14:32:30:0.467:2	0/1:0,47:32:47:1.00:2
chr12	48579665	rs7487682	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,8:30:32:0.250:2	0/1:79,81:32:160:0.506:2	0/1:98,55:30:153:0.359:2	0/1:2,135:31:138:0.985:2	0/1:120,63:32:183:0.344:2	0/1:95,75:31:170:0.441:2	0/1:90,74:33:164:0.451:2	0/1:78,65:32:143:0.455:2	0/1:72,68:32:140:0.486:2
chr12	48596241	rs11168459	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,38:32:90:0.422:2	./.	./.	0/1:22,39:32:61:0.639:2	./.	0/1:52,35:32:87:0.402:2	./.	./.
chr12	48596254	rs11830378	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,25:30:69:0.362:2	./.	./.	./.
chr12	48596484	rs75413005	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,25:32:58:0.431:2	./.	./.	./.
chr12	48596546	rs75531856	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,26:30:65:0.400:2	./.	./.	./.
chr12	48596579	rs17224674	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,34:31:84:0.405:2	./.	./.	./.
chr12	48596641	rs75539159	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,79:29:164:0.482:2	./.	./.	./.
chr12	48596890	rs17823193	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,56:31:158:0.354:2	./.	./.	./.
chr12	48597053	rs17122812	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,12:32:34:0.353:2	./.	./.	0/1:13,11:31:24:0.458:2	./.	0/1:24,11:31:35:0.314:2	./.	./.
chr12	48597064	rs17224828	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,18:31:47:0.383:2	./.	./.	./.
chr12	48723324	rs2732441	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,6:30:8:0.750:2	0/1:20,18:29:38:0.474:2	0/1:24,21:29:45:0.467:2	0/1:0,38:31:38:1.00:2	./.	0/1:34,23:31:57:0.404:2	./.	0/1:22,17:32:39:0.436:2	0/1:17,8:31:25:0.320:2
chr12	48723595	rs1471997	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,8:31:24:0.333:2	./.	./.	0/1:8,7:32:15:0.467:2	./.	0/1:6,10:34:16:0.625:2	./.	./.
chr12	48723784	rs2291483	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:13,9:32:22:0.409:2	0/1:14,13:30:27:0.481:2	0/1:0,4:29:4:1.00:2	./.	0/1:24,14:30:38:0.368:2	./.	0/1:6,10:31:16:0.625:2	./.	0/1:14,10:31:24:0.417:2	./.	0/1:5,10:31:15:0.667:2
chr12	48724006	rs76054343	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:32:9:0.333:2	./.	./.	./.
chr12	48736985	rs2732481	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,8:32:18:0.444:2	0/1:109,74:29:184:0.404:2	0/1:118,75:30:194:0.389:2	0/1:1,180:30:181:0.994:2	./.	0/1:104,88:29:192:0.458:2	./.	0/1:69,48:29:117:0.410:2	0/1:95,84:29:179:0.469:2
chr12	48737245	rs2732484	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,47:32:106:0.448:2	0/1:40,37:32:78:0.481:2	0/1:1,104:31:105:0.990:2	./.	0/1:69,38:31:107:0.355:2	./.	0/1:57,36:31:94:0.387:2	0/1:75,55:31:130:0.423:2
chr12	48741753	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:33:124:0.032:2	./.	./.
chr12	48866481	rs141807268	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	48866585	rs7956679	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,10:33:23:0.435:2	./.	./.	0/1:22,22:32:44:0.500:2	./.
chr12	48866792	rs7966826	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,12:33:29:0.414:2	./.	0/1:95,4:33:99:0.040:2	0/1:47,39:31:86:0.453:2	./.
chr12	48879951	rs11168599	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:44,3:33:47:0.064:2	./.	0/1:25,38:33:63:0.603:2	0/1:24,28:32:52:0.538:2	0/1:0,75:32:75:1.00:2	0/1:29,23:32:52:0.442:2	0/1:35,44:32:79:0.557:2	0/1:47,32:34:79:0.405:2	./.	0/1:37,37:33:74:0.500:2
chr12	48884610	rs61940778	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,23:31:52:0.442:2	./.	./.	./.	0/1:44,50:32:94:0.532:2	./.	./.
chr12	48888594	rs11458	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,33:32:65:0.508:2	0/1:33,27:31:60:0.450:2	0/1:0,61:31:61:1.00:2	0/1:48,24:31:72:0.333:2	0/1:44,51:31:95:0.537:2	0/1:57,40:31:97:0.412:2	./.	0/1:38,41:32:79:0.519:2
chr12	48888689	rs9268	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,26:31:55:0.473:2	0/1:19,29:32:48:0.604:2	./.	0/1:32,16:33:48:0.333:2	0/1:1,62:32:63:0.984:2	0/1:0,101:32:101:1.00:2	0/1:57,23:32:80:0.288:2	0/1:4,80:32:84:0.952:2	0/1:0,70:32:71:1.00:2	./.	0/1:0,75:32:75:1.00:2
chr12	48919556	rs2731073	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,107:29:107:1.00:2	0/1:0,51:28:51:1.00:2	0/1:9,3:28:12:0.250:2	0/1:80,49:28:129:0.380:2	0/1:0,113:29:113:1.00:2	0/1:1,87:29:88:0.989:2	0/1:0,142:29:142:1.00:2	0/1:1,154:28:155:0.994:2	0/1:0,161:30:161:1.00:2	0/1:0,119:29:119:1.00:2	0/1:0,131:28:132:1.00:2
chr12	48919659	rs4075258	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,56:31:121:0.463:2	0/1:53,46:31:99:0.465:2	0/1:0,106:32:106:1.00:2	0/1:3,122:30:125:0.976:2	0/1:84,51:32:135:0.378:2	0/1:88,66:33:154:0.429:2	0/1:55,53:30:108:0.491:2	0/1:78,80:32:158:0.506:2
chr12	48919660	rs35367885	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,56:32:119:0.471:2	0/1:50,46:32:96:0.479:2	0/1:0,106:32:106:1.00:2	0/1:72,58:32:131:0.446:2	0/1:84,51:32:135:0.378:2	0/1:87,66:33:153:0.431:2	./.	0/1:79,79:32:158:0.500:2
chr12	48919793	rs2705143	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:44,49:30:93:0.527:2	0/1:30,26:30:56:0.464:2	0/1:5,3:25:8:0.375:2	./.	./.	./.	./.	./.	./.	0/1:33,54:30:87:0.621:2	./.
chr12	48919796	rs12425460	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,65:33:114:0.570:2	0/1:40,76:32:116:0.655:2	0/1:0,114:32:115:1.00:2	0/1:1,110:32:111:0.991:2	0/1:72,65:32:137:0.474:2	0/1:52,71:33:123:0.577:2	0/1:57,31:32:88:0.352:2	0/1:56,66:33:123:0.541:2
chr12	48920006	rs12425518	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,78:30:195:0.400:2	./.	./.	0/1:103,78:30:181:0.431:2	./.
chr12	48920073	rs61941963	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:86,67:32:153:0.438:2	0/1:37,41:32:78:0.526:2	./.	./.	0/1:86,81:31:167:0.485:2	./.	./.	0/1:89,88:32:177:0.497:2	0/1:90,70:32:160:0.438:2	./.	0/1:81,44:32:125:0.352:2
chr12	48963795	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,25:31:65:0.385:2	./.	./.
chr12	49048252	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,6:32:142:0.042:2	./.	./.
chr12	49048738	rs3741628	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,29:32:69:0.420:2	0/1:22,13:33:35:0.371:2	0/1:0,16:32:16:1.00:2	0/1:1,70:32:72:0.986:2	0/1:30,33:31:63:0.524:2	0/1:37,40:31:77:0.519:2	0/1:0,68:32:68:1.00:2	0/1:0,79:32:79:1.00:2	./.	0/1:40,29:32:69:0.420:2	0/1:0,81:33:81:1.00:2
chr12	49065727	rs7303113	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,30:29:57:0.526:2	0/1:17,15:26:32:0.469:2	0/1:0,7:30:7:1.00:2	0/1:44,30:29:74:0.405:2	./.	./.	./.	0/1:0,86:29:86:1.00:2	./.	./.	0/1:60,53:29:113:0.469:2
chr12	49086963	rs3741632	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:68,69:31:137:0.504:2	0/1:49,37:31:86:0.430:2	0/1:0,16:31:16:1.00:2	0/1:0,170:30:170:1.00:2	0/1:95,74:29:169:0.438:2	0/1:87,60:29:147:0.408:2	0/1:0,148:30:148:1.00:2	0/1:4,183:30:187:0.979:2	./.	0/1:67,65:31:132:0.492:2	0/1:3,145:30:148:0.980:2
chr12	49087184	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:31:101:0.040:2
chr12	49087593	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,13:12:57:0.228:2	0/1:29,12:15:41:0.293:2	./.	./.	./.	./.	./.	0/1:31,15:17:46:0.326:2
chr12	49087656	rs3013	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,10:30:24:0.417:2	0/1:13,10:30:23:0.435:2	0/1:0,2:30:2:1.00:2	0/1:13,5:30:18:0.278:2	./.	./.	./.	0/1:0,16:28:16:1.00:2	./.	./.	0/1:15,14:29:29:0.483:2
chr12	49091972	rs11420004	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,19:16:38:0.500:2	./.	./.	0/1:23,16:19:39:0.410:2	0/1:20,11:14:31:0.355:2	0/1:28,9:18:37:0.243:2	0/1:22,7:21:29:0.241:2	0/1:17,8:19:25:0.320:2	0/1:22,5:22:27:0.185:2	0/1:14,15:21:29:0.517:2	0/1:31,9:21:40:0.225:2
chr12	49091994	rs369674739	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,6:20:32:0.188:2	./.	./.	0/1:22,6:16:28:0.214:2	0/1:18,5:23:24:0.217:2	./.	./.	0/1:12,7:15:19:0.368:2	0/1:19,6:21:25:0.240:2	./.	0/1:23,8:18:31:0.258:2
chr12	49176503	rs200593680	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,14:26:40:0.350:2	./.
chr12	49176582	rs3730064	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,15:31:41:0.366:2	./.	./.
chr12	49176860	rs55770045	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,12:30:25:0.480:2	./.	./.	./.	./.	./.	./.	./.
chr12	49176872	rs3730308	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,11:29:20:0.550:2	./.	./.	0/1:6,5:29:11:0.455:2
chr12	49177113	rs2453486	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,20:27:51:0.392:2	0/1:19,21:26:40:0.525:2	0/1:7,6:25:13:0.462:2	0/1:43,26:25:69:0.377:2	./.	0/1:42,21:24:63:0.333:2	0/1:34,12:25:46:0.261:2	./.	0/1:27,27:25:54:0.500:2	./.	./.
chr12	49177213	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,6:26:180:0.033:2	./.	./.	./.	./.	./.
chr12	49221622	rs1045340	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,7:30:17:0.412:2	0/1:1,172:30:173:0.994:2	0/1:0,178:30:179:1.00:2	0/1:1,176:30:177:0.994:2	./.	./.	0/1:109,73:32:183:0.401:2	./.	./.
chr12	49224336	rs146973565	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,46:32:97:0.474:2	0/1:27,37:33:64:0.578:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	49230035	rs1057908	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,9:32:20:0.450:2	0/1:0,172:33:172:1.00:2	0/1:4,147:33:151:0.974:2	0/1:2,149:32:151:0.987:2	0/1:136,4:32:140:0.029:2	./.	0/1:97,68:33:165:0.412:2	./.	./.
chr12	49237825	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,79:33:164:0.482:2	0/1:92,69:32:161:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	49255798	rs1565933	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,46:33:109:0.422:2	0/1:46,25:33:71:0.352:2	0/1:23,11:33:34:0.324:2	0/1:77,87:33:166:0.530:2	0/1:87,74:32:161:0.460:2	0/1:92,81:32:173:0.468:2	0/1:121,70:33:191:0.366:2	0/1:107,86:33:193:0.446:2	0/1:1,151:34:154:0.993:2	./.	./.
chr12	49258571	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.	./.	./.
chr12	49308284	rs10747556	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,18:30:53:0.340:2	0/1:0,28:29:28:1.00:2	0/1:0,33:30:33:1.00:2	0/1:21,31:30:52:0.596:2	0/1:28,31:29:59:0.525:2	0/1:3,39:29:42:0.929:2	./.	./.
chr12	49312593	rs10875893	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,39:33:84:0.464:2	0/1:1,59:32:60:0.983:2	0/1:0,97:32:97:1.00:2	0/1:32,39:32:71:0.549:2	0/1:45,66:31:111:0.595:2	0/1:0,105:33:105:1.00:2	./.	./.
chr12	49314862	rs10875894	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,10:31:20:0.500:2	0/1:0,13:31:13:1.00:2	0/1:0,19:31:19:1.00:2	0/1:4,4:32:8:0.500:2	0/1:15,11:33:26:0.423:2	0/1:0,25:32:25:1.00:2	./.	./.
chr12	49314994	rs4760600	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,14:31:36:0.389:2	0/1:0,33:29:33:1.00:2	0/1:0,46:31:46:1.00:2	0/1:13,17:32:30:0.567:2	0/1:23,16:32:39:0.410:2	0/1:0,38:32:38:1.00:2	./.	./.
chr12	49315050	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:32:78:0.051:2	./.	./.	./.	./.	./.
chr12	49315200	rs117927481	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,33:32:71:0.465:2	./.	./.	./.	./.	./.	./.	./.
chr12	49333799	rs2228417	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,58:31:139:0.417:2	./.	./.	0/1:68,45:31:113:0.398:2	0/1:80,50:32:130:0.385:2
chr12	49334762	rs12122	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,128:33:129:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,182:33:182:1.00:2	0/1:1,184:33:185:0.995:2	./.	0/1:0,192:33:192:1.00:2	0/1:100,91:33:191:0.476:2	0/1:0,155:34:156:1.00:2	0/1:0,145:33:146:1.00:2	0/1:0,151:33:151:1.00:2
chr12	49359989	rs1051886	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,16:30:35:0.457:2	0/1:0,85:30:85:1.00:2	0/1:0,56:30:56:1.00:2	0/1:13,30:30:43:0.698:2	0/1:18,37:30:55:0.673:2	0/1:0,50:31:50:1.00:2	./.	./.
chr12	49390677	rs10783299	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,12:28:12:1.00:2	0/1:40,13:33:53:0.245:2	0/1:34,21:31:55:0.382:2	0/1:44,23:31:67:0.343:2	0/1:69,3:35:72:0.042:2	./.	./.	./.	0/1:35,25:28:60:0.417:2
chr12	49415640	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:32:114:0.035:2	./.	./.	./.	./.
chr12	49418435	rs55776396	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,5:32:6:0.833:2	0/1:42,37:32:79:0.468:2	./.	./.	./.	./.	./.	./.	./.
chr12	49424534	rs11168830	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:12,9:33:21:0.429:2	0/1:3,4:32:7:0.571:2	./.	./.	./.	./.	./.	0/1:6,8:32:14:0.571:2	./.	./.	./.
chr12	49425978	rs3741622	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,20:27:57:0.351:2	0/1:25,22:27:47:0.468:2	./.	./.	./.	./.	0/1:44,19:28:63:0.302:2
chr12	49426460	rs80132640	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,7:34:14:0.500:2	0/1:53,51:33:104:0.490:2	./.	./.	./.	./.	./.	./.	./.
chr12	49426852	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:33:107:0.037:2	./.	./.	./.	./.	./.
chr12	49427652	rs3782357	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,14:31:46:0.304:2	0/1:22,39:31:61:0.639:2	0/1:28,21:31:49:0.429:2	./.	./.	./.	./.	0/1:12,18:32:30:0.600:2
chr12	49427919	rs61942218	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,38:30:67:0.567:2	./.	./.
chr12	49431096	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:32:174:0.023:2	./.	./.	./.	./.	./.
chr12	49432644	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,5:27:196:0.026:2
chr12	49433015	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,16:29:27:0.593:2	./.	./.	./.	./.	./.
chr12	49434074	rs10747559	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:31:3:1.00:2	0/1:9,19:28:28:0.679:2	0/1:15,7:29:22:0.318:2	0/1:21,14:25:35:0.400:2	0/1:5,9:26:14:0.643:2	./.	0/1:11,17:30:28:0.607:2	./.	0/1:17,11:28:28:0.393:2
chr12	49434075	rs833819	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,14:32:27:0.519:2	./.
chr12	49437760	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:31:115:0.035:2	./.	./.	./.	./.	./.
chr12	49444545	rs2241726	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:30:3:1.00:2	0/1:11,8:28:19:0.421:2	0/1:9,7:30:16:0.438:2	0/1:9,8:29:17:0.471:2	./.	./.	./.	./.	0/1:9,7:28:16:0.438:2
chr12	49448463	rs55865069	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:29:7:0.571:2	0/1:25,33:32:58:0.569:2	./.	./.	./.	./.	./.	./.	./.
chr12	49460250	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:33:166:0.024:2
chr12	49484933	rs117527954	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,36:32:83:0.434:2	0/1:32,27:31:59:0.458:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	49494371	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:32:116:0.034:2	./.
chr12	49495321	rs35541634	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,59:30:118:0.500:2	./.	./.	./.	./.	./.
chr12	49498284	rs35343771	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,19:32:51:0.373:2	./.	./.	./.	./.	./.	./.
chr12	49500509	rs10747561	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:74,53:32:127:0.417:2	0/1:48,43:32:91:0.473:2	./.	0/1:86,74:32:160:0.463:2	0/1:85,58:32:143:0.406:2	./.	./.	./.	./.	0/1:81,76:32:157:0.484:2	./.
chr12	49522139	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:28:193:0.026:2	./.	./.	./.	./.	./.
chr12	49522238	rs199895521	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:153,44:30:197:0.223:2	0/1:148,44:31:192:0.229:2	0/1:29,7:30:36:0.194:2	0/1:165,33:30:198:0.167:2	0/1:158,37:30:195:0.190:2	0/1:158,39:29:197:0.198:2	./.	0/1:159,35:30:194:0.180:2	./.	0/1:155,42:30:197:0.213:2	./.
chr12	49522578	rs1057725	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:72,39:28:111:0.351:2	0/1:49,22:29:71:0.310:2	./.	0/1:90,37:29:128:0.291:2	0/1:72,31:28:103:0.301:2	./.	./.	./.	./.	0/1:80,29:30:109:0.266:2	./.
chr12	49522605	rs1057548	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:79,47:31:126:0.373:2	0/1:48,30:31:78:0.385:2	./.	0/1:100,53:30:153:0.346:2	0/1:78,45:30:123:0.366:2	./.	./.	./.	./.	0/1:101,39:30:140:0.279:2	./.
chr12	49522644	rs16924507	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,5:30:188:0.027:2	./.	0/1:189,6:32:195:0.031:2	0/1:183,6:31:189:0.032:2	./.
chr12	49523096	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,5:32:172:0.029:2	0/1:174,7:33:181:0.039:2	./.	./.	./.
chr12	49523112	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,5:33:143:0.035:2	./.	./.
chr12	49523124	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:30:119:0.034:2	./.	./.
chr12	49523127	rs3175477	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:30:125:0.032:2	./.	0/1:113,6:26:119:0.050:2	./.	./.
chr12	49523314	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:152,5:33:157:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr12	49579195	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:148,5:31:153:0.033:2	./.	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2	./.	0/1:182,5:31:187:0.027:2
chr12	49579290	rs150978489	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:191,7:31:198:0.035:2	./.	0/1:191,7:31:199:0.035:2	./.	0/1:189,8:31:197:0.041:2	./.	0/1:188,8:32:196:0.041:2	./.
chr12	49579477	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:31:171:0.023:2	0/1:182,9:30:192:0.047:2	./.	./.	0/1:183,5:32:188:0.027:2
chr12	49579486	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:31:157:0.025:2	0/1:181,11:31:192:0.057:2	./.	0/1:172,6:32:178:0.034:2	0/1:182,7:33:189:0.037:2
chr12	49579492	rs146680997	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,11:29:184:0.060:2	./.	0/1:178,6:30:184:0.033:2	0/1:173,7:29:180:0.039:2
chr12	49579696	rs697624	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:61,42:32:103:0.408:2	0/1:36,23:31:59:0.390:2	./.	0/1:65,47:32:113:0.420:2	0/1:38,39:32:77:0.506:2	./.	./.	0/1:165,4:32:169:0.024:2	./.	0/1:65,40:32:105:0.381:2	0/1:144,6:32:150:0.040:2
chr12	49580180	rs1056875	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,49:33:84:0.583:2	0/1:27,27:33:54:0.500:2	./.	0/1:60,48:33:108:0.444:2	0/1:68,53:32:121:0.438:2	./.	./.	./.	./.	0/1:54,44:34:98:0.449:2	./.
chr12	49580425	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:33:154:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	49580449	rs1055956	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,47:31:171:0.275:2	./.	./.	./.	./.	./.
chr12	49663385	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:33:131:0.031:2	./.
chr12	49663409	rs115048428	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:147,5:33:152:0.033:2	./.	./.	./.	./.	0/1:85,37:32:122:0.303:2	./.	./.	./.	./.	./.
chr12	49663415	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,5:31:154:0.032:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	49663660	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:149,5:31:154:0.032:2	0/1:185,5:29:191:0.026:2	./.	./.	./.	./.	0/1:109,4:31:113:0.035:2	./.
chr12	49663735	rs201347417	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:31:137:0.029:2	./.	./.	./.	./.	./.
chr12	49666113	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,6:35:196:0.031:2	./.	./.	./.	./.
chr12	49666152	rs199599214	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:144,10:31:154:0.065:2	0/1:105,7:32:112:0.063:2	./.	./.	0/1:168,9:31:177:0.051:2	./.	./.	./.	./.	0/1:145,6:31:151:0.040:2	./.
chr12	49666182	rs1057748	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:138,23:31:161:0.143:2	0/1:103,13:31:117:0.112:2	./.	0/1:158,11:31:169:0.065:2	0/1:149,15:30:164:0.091:2	./.	./.	./.	./.	0/1:143,11:31:154:0.071:2	./.
chr12	49666509	rs7974831	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,111:31:114:0.974:2	0/1:2,71:31:73:0.973:2	0/1:23,6:32:29:0.207:2	0/1:118,43:31:161:0.267:2	0/1:115,67:31:182:0.368:2	0/1:135,54:31:189:0.286:2	./.	0/1:136,56:31:192:0.292:2	./.	0/1:126,54:31:180:0.300:2	./.
chr12	49666677	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:33:194:0.026:2	./.	./.	./.	./.
chr12	49666679	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:33:193:0.026:2	./.	./.	./.	./.
chr12	49689009	rs57451017	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,21:32:48:0.438:2	0/1:12,15:31:27:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	49689046	rs58403142	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:28:10:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	49689316	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:31:46:0.087:2	./.
chr12	49690798	rs62636520	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:31:10:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	49691250	rs73112143	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,12:33:17:0.706:2	0/1:6,4:28:10:0.400:2	0/1:0,2:34:2:1.00:2	0/1:0,21:31:21:1.00:2	./.	./.	./.	./.	./.	0/1:15,7:31:22:0.318:2	./.
chr12	49717533	rs8285	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,13:31:41:0.317:2	./.	./.	./.	./.	./.	./.	./.
chr12	49721015	rs78961476	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,51:31:119:0.429:2	0/1:28,27:32:55:0.491:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	49722793	rs2230550	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,40:32:83:0.482:2	0/1:24,21:32:45:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	49723963	rs4243545	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,60:32:95:0.632:2	0/1:31,15:32:46:0.326:2	0/1:15,8:33:23:0.348:2	0/1:62,50:32:112:0.446:2	./.	./.	./.	./.	./.	0/1:41,48:32:89:0.539:2	./.
chr12	49743142	rs146774114	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,15:29:38:0.395:2	./.	./.	./.	./.	./.
chr12	49933229	rs148933979	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:31:3:1.00:2
chr12	49937813	rs1150057	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,10:30:20:0.500:2	./.	./.	./.	0/1:87,88:31:175:0.503:2	./.	./.	./.	./.
chr12	49950251	rs113209368	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,61:30:107:0.570:2	./.	./.	./.	./.	./.	./.	./.
chr12	49950982	rs11541357	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:29:12:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	49951232	rs2241418	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,7:31:33:0.212:2	./.	./.	./.	./.
chr12	49951377	rs59261129	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,5:32:15:0.333:2	./.	./.	./.	./.
chr12	49951528	rs144397719	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,37:32:66:0.561:2	./.	./.	./.	./.	./.	./.	./.
chr12	49952668	rs2303305	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,10:32:23:0.435:2	./.	./.	./.	./.
chr12	49956852	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,55:32:135:0.407:2	./.	./.	./.
chr12	49958615	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:34:86:0.047:2	./.
chr12	49959904	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:32:140:0.029:2	./.	./.
chr12	49960551	rs13066	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:33:9:0.556:2	./.	./.	./.	0/1:14,24:32:38:0.632:2	./.	./.	./.	./.
chr12	49993678	rs52824916	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,13:31:29:0.448:2	./.	./.	./.	0/1:113,61:32:174:0.351:2	./.	./.	./.	./.
chr12	49994257	rs200437763	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,9:17:123:0.074:2	./.	./.	./.	./.
chr12	50025207	.	A	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,15:15:76:0.200:2	./.	0/1:5,5:23:10:0.500:2	0/1:89,7:21:96:0.073:2	0/1:51,9:15:60:0.150:2	./.	./.	0/1:88,8:18:97:0.083:2	0/1:74,12:16:86:0.140:2	0/1:62,8:20:71:0.114:2	0/1:69,10:20:81:0.127:2
chr12	50026423	rs79252534	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	50028965	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,3:32:18:0.167:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	50037745	rs35275181	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:31:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	50047548	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:30:135:0.030:2	./.	./.	./.	./.	./.
chr12	50052254	rs183245861	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,26:30:68:0.382:2	./.	./.	./.
chr12	50100913	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,4:28:53:0.075:2	./.	./.	./.	./.	./.	./.
chr12	50152071	rs191728675	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,29:31:89:0.326:2	./.	./.	./.	./.
chr12	50152193	rs4563	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:33:15:0.533:2	./.	./.	./.	0/1:102,79:33:181:0.436:2	./.	./.	./.	./.
chr12	50156640	rs10506287	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,23:33:29:0.793:2	./.	./.	./.	./.
chr12	50185778	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:30:6:0.667:2	./.	./.	./.	./.
chr12	50186585	rs138292278	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,7:28:24:0.304:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	50189602	rs3813526	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,5:31:7:0.714:2	./.	./.	./.	./.
chr12	50189807	rs2720298	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,6:32:14:0.429:2	0/1:0,2:33:2:1.00:2	./.	0/1:8,9:31:17:0.529:2	0/1:6,12:31:18:0.667:2	./.	0/1:0,8:32:8:1.00:2	./.	./.	./.	0/1:11,5:32:16:0.313:2
chr12	50189834	rs2603104	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:31:17:1.00:2	0/1:0,3:31:3:1.00:2	./.	0/1:0,16:31:16:1.00:2	0/1:7,12:31:19:0.632:2	./.	0/1:1,17:30:18:0.944:2	./.	./.	./.	0/1:16,9:32:25:0.360:2
chr12	50190160	rs145718102	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,19:30:34:0.559:2	./.	./.	./.	./.	./.
chr12	50190653	rs3741555	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,11:30:27:0.407:2	./.	./.	./.	./.
chr12	50190667	rs3741554	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,9:30:29:0.310:2	./.	./.	./.	./.
chr12	50232169	rs11169172	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:32:7:0.571:2	./.	./.	./.	./.
chr12	50232242	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,4:33:32:0.125:2	./.	./.	./.	./.
chr12	50232496	rs17260403	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,19:32:32:0.594:2	./.	./.	./.	./.	0/1:15,20:33:35:0.571:2	./.
chr12	50291866	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:33:81:0.049:2	./.
chr12	50344816	rs104894331	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,9:14:39:0.237:2	./.	./.	./.	./.	./.	./.	./.
chr12	50348078	rs426496	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,13:30:13:1.00:2	0/1:0,11:27:11:1.00:2	./.	0/1:0,20:30:20:1.00:2	0/1:0,18:28:18:1.00:2	0/1:21,11:29:32:0.344:2	0/1:0,18:30:18:1.00:2	0/1:1,21:29:22:0.955:2	0/1:13,13:31:26:0.500:2	0/1:0,19:27:19:1.00:2	0/1:0,24:29:24:1.00:2
chr12	50358888	rs41308104	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,46:32:89:0.517:2
chr12	50367080	rs373075912	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:32:107:0.037:2	./.	./.	./.
chr12	50386398	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,4:33:18:0.222:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	50399091	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:31:110:0.036:2	./.	./.	./.	./.	./.
chr12	50399108	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:33:115:0.035:2	./.	./.	./.	./.	./.
chr12	50452708	rs653576	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,102:29:103:0.990:2	0/1:0,72:29:72:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,152:29:152:1.00:2	0/1:0,190:28:190:1.00:2	0/1:1,181:28:182:0.995:2	0/1:0,188:28:188:1.00:2	0/1:0,187:28:187:1.00:2	0/1:0,165:30:165:1.00:2	0/1:0,131:29:131:1.00:2	0/1:0,116:28:116:1.00:2
chr12	50503269	rs836180	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.	./.	./.	./.	0/1:58,26:32:84:0.310:2	./.	0/1:25,41:31:66:0.621:2	0/1:1,60:32:61:0.984:2
chr12	50529736	rs3741562	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:28,14:32:42:0.333:2	0/1:15,9:31:24:0.375:2	./.	0/1:27,27:31:54:0.500:2	./.	0/1:0,51:31:51:1.00:2	0/1:28,11:31:39:0.282:2	0/1:37,21:31:58:0.362:2	0/1:0,47:32:47:1.00:2	0/1:25,22:32:47:0.468:2	./.
chr12	50537815	rs7302981	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,34:31:34:1.00:2	0/1:0,18:30:18:1.00:2	./.	0/1:0,34:31:34:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,26:30:26:1.00:2	0/1:20,23:31:43:0.535:2	0/1:0,34:31:34:1.00:2	0/1:13,15:31:28:0.536:2	./.
chr12	50589674	rs200957875	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	50724501	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2
chr12	50727706	rs6580741	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:124,76:33:200:0.380:2	0/1:76,36:32:112:0.321:2	./.	0/1:102,89:33:192:0.466:2	./.	0/1:0,188:32:188:1.00:2	0/1:129,46:32:175:0.263:2	0/1:133,62:32:195:0.318:2	0/1:110,85:34:195:0.436:2	0/1:106,86:33:192:0.448:2	./.
chr12	50727811	rs6580742	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:97,88:30:186:0.476:2	0/1:60,54:31:114:0.474:2	./.	0/1:108,87:30:195:0.446:2	./.	./.	./.	0/1:123,70:30:193:0.363:2	./.	0/1:109,80:30:189:0.423:2	./.
chr12	50744119	rs7296291	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,35:29:76:0.461:2	0/1:37,14:30:51:0.275:2	0/1:0,12:30:12:1.00:2	0/1:37,51:29:88:0.580:2	0/1:0,50:30:50:1.00:2	./.	0/1:38,25:30:63:0.397:2	0/1:60,36:30:96:0.375:2	0/1:53,54:31:107:0.505:2	0/1:42,24:29:66:0.364:2	0/1:0,86:30:86:1.00:2
chr12	50744171	rs7312252	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,40:30:90:0.444:2	0/1:48,31:30:79:0.392:2	0/1:0,26:29:26:1.00:2	0/1:64,70:30:134:0.522:2	0/1:0,87:29:87:1.00:2	./.	0/1:69,51:30:120:0.425:2	0/1:68,62:30:132:0.477:2	0/1:69,73:31:142:0.514:2	0/1:62,49:30:111:0.441:2	0/1:0,125:29:125:1.00:2
chr12	50744753	rs10506292	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,10:34:42:0.238:2	0/1:12,11:32:23:0.478:2	0/1:0,3:34:3:1.00:2	0/1:22,23:33:45:0.511:2	0/1:0,23:33:23:1.00:2	./.	0/1:19,22:33:41:0.537:2	0/1:26,14:32:40:0.350:2	0/1:23,16:35:39:0.410:2	0/1:9,15:32:24:0.625:2	0/1:0,49:33:49:1.00:2
chr12	50745677	.	T	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,5:29:75:0.067:2	0/1:66,5:32:71:0.070:2	./.	0/1:58,4:33:62:0.065:2	./.	./.	0/1:44,4:28:48:0.083:2	0/1:62,8:32:70:0.114:2
chr12	50745703	rs201307392	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:29,7:31:36:0.194:2	./.	0/1:69,6:32:75:0.080:2	0/1:76,12:28:88:0.136:2	./.	0/1:68,8:27:76:0.105:2	0/1:73,9:32:82:0.110:2	./.	0/1:43,12:29:56:0.218:2	0/1:71,14:30:85:0.165:2
chr12	50745720	rs200575618	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,10:30:61:0.164:2	./.
chr12	50745779	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,5:30:43:0.116:2	0/1:30,5:28:36:0.143:2
chr12	50745791	rs144970699	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:30,3:32:33:0.091:2	./.	./.	./.	0/1:17,6:26:23:0.261:2	./.	0/1:27,3:33:30:0.100:2	./.	./.	./.	0/1:22,9:33:31:0.290:2
chr12	50745792	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,11:30:32:0.344:2	./.
chr12	50745811	rs34782671	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:37,5:31:42:0.119:2	./.	./.	0/1:50,6:28:56:0.107:2	0/1:10,5:27:16:0.333:2	./.	0/1:24,3:33:27:0.111:2	./.	./.	0/1:22,4:33:26:0.154:2	0/1:25,9:33:34:0.265:2
chr12	50745827	rs12317332	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,3:29:19:0.158:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	50745856	rs113879003	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,19:29:57:0.339:2	0/1:18,7:28:25:0.280:2	0/1:4,7:29:11:0.636:2	0/1:53,13:30:66:0.197:2	0/1:12,18:27:30:0.600:2	./.	0/1:41,13:28:54:0.241:2	0/1:52,22:28:74:0.297:2	0/1:44,16:28:60:0.267:2	0/1:25,13:28:38:0.342:2	0/1:14,36:30:50:0.720:2
chr12	50745857	rs12297653	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,13:31:57:0.228:2	./.	0/1:7,4:23:11:0.364:2	0/1:57,8:26:65:0.123:2	0/1:18,11:30:30:0.379:2	./.	0/1:47,7:31:54:0.130:2	0/1:67,8:29:75:0.107:2	0/1:56,4:31:60:0.067:2	./.	0/1:37,14:31:51:0.275:2
chr12	50745858	rs374020295	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:45,12:28:58:0.211:2	0/1:20,4:25:24:0.167:2	./.	0/1:57,8:28:65:0.123:2	0/1:20,11:27:31:0.355:2	./.	0/1:46,7:30:53:0.132:2	0/1:67,8:28:75:0.107:2	0/1:56,5:25:61:0.082:2	./.	0/1:37,14:30:51:0.275:2
chr12	50745924	rs34283706	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:40,5:32:47:0.111:2	./.	0/1:86,5:25:91:0.055:2	0/1:91,6:24:97:0.062:2	./.	./.	0/1:86,8:30:94:0.085:2	./.	./.	./.
chr12	50745972	rs34493444	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:48,6:19:54:0.111:2	./.	./.	./.	./.	./.	./.	0/1:87,5:25:92:0.054:2	./.	./.
chr12	50746022	rs7304692	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:50,7:32:57:0.123:2	0/1:46,8:25:54:0.148:2	./.	0/1:83,11:33:94:0.117:2	0/1:61,4:30:65:0.062:2	0/1:93,5:33:98:0.051:2	0/1:74,8:32:82:0.098:2	0/1:74,12:31:87:0.140:2	0/1:78,7:31:85:0.082:2	0/1:82,8:31:90:0.089:2	0/1:66,11:31:77:0.143:2
chr12	50746092	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,3:33:55:0.055:2	./.	./.	./.	./.
chr12	50746098	rs10876022	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:32:36:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,64:32:64:1.00:2	0/1:1,53:31:54:0.981:2	0/1:0,67:32:67:1.00:2	0/1:0,56:33:56:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,36:32:36:1.00:2
chr12	50746116	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,6:26:61:0.098:2	0/1:92,4:29:96:0.042:2	./.	./.	./.	./.	./.
chr12	50746140	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:30:126:0.032:2	./.	./.	./.	./.
chr12	50746166	rs368983791	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:135,7:28:143:0.049:2	./.	./.	./.	./.	./.	./.
chr12	50746230	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:168,5:27:173:0.029:2	./.	0/1:181,5:30:186:0.027:2	./.	./.	./.	./.	./.
chr12	50746243	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:100,11:14:111:0.099:2	./.	0/1:167,12:18:180:0.067:2	./.	./.	./.	./.	./.	0/1:154,6:26:160:0.038:2	./.
chr12	50746348	rs7304951	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,119:32:119:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,150:32:150:1.00:2	0/1:0,155:32:155:1.00:2	0/1:0,151:31:151:1.00:2	0/1:0,180:32:180:1.00:2	0/1:0,159:32:159:1.00:2	0/1:0,155:33:155:1.00:2	0/1:0,134:32:134:1.00:2	0/1:0,129:32:129:1.00:2
chr12	50746442	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:117,6:29:123:0.049:2	./.	./.	./.	./.	./.	./.	./.	0/1:130,8:24:138:0.058:2	./.	./.
chr12	50746459	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:31:120:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	50746511	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:29:58:0.069:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	50746514	rs71466905	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,6:32:109:0.055:2	0/1:52,5:32:57:0.088:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,6:33:103:0.058:2
chr12	50746917	rs10876023	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,27:32:52:0.519:2	0/1:8,9:31:17:0.529:2	0/1:0,8:33:8:1.00:2	0/1:51,30:32:81:0.370:2	0/1:4,42:33:46:0.913:2	./.	0/1:26,17:32:43:0.395:2	0/1:63,24:32:87:0.276:2	0/1:29,23:33:52:0.442:2	0/1:35,30:33:65:0.462:2	0/1:0,58:32:58:1.00:2
chr12	50747005	rs10876024	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,37:31:62:0.597:2	0/1:9,15:30:24:0.625:2	0/1:0,7:32:7:1.00:2	0/1:44,29:31:73:0.397:2	0/1:0,31:31:31:1.00:2	./.	0/1:26,16:30:42:0.381:2	0/1:47,26:30:73:0.356:2	0/1:21,25:31:46:0.543:2	0/1:29,30:30:59:0.508:2	0/1:0,51:30:51:1.00:2
chr12	50747102	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,5:26:67:0.075:2	./.	0/1:54,5:28:59:0.085:2	./.	./.	./.	./.
chr12	50748838	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:34:195:0.021:2
chr12	50749221	rs4435082	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:32:67:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,90:33:90:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,108:32:108:1.00:2
chr12	50749227	rs4625558	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:33:63:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,106:33:106:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,101:33:101:1.00:2	0/1:0,79:33:79:1.00:2	0/1:0,107:33:108:1.00:2
chr12	50749294	rs4421818	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:49,42:32:91:0.462:2	0/1:34,37:32:71:0.521:2	./.	0/1:72,53:33:125:0.424:2	./.	0/1:0,130:32:130:1.00:2	0/1:51,63:33:114:0.553:2	0/1:79,72:32:151:0.477:2	0/1:70,61:33:131:0.466:2	0/1:71,51:32:122:0.418:2	./.
chr12	50749554	rs74090114	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:33:117:0.034:2	./.	./.	./.	./.
chr12	50754563	rs12303082	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,39:33:91:0.429:2	0/1:33,10:33:43:0.233:2	0/1:0,6:33:6:1.00:2	0/1:50,46:33:96:0.479:2	0/1:1,66:31:67:0.985:2	./.	0/1:39,28:33:67:0.418:2	0/1:47,46:33:93:0.495:2	0/1:55,36:33:91:0.396:2	0/1:37,41:33:78:0.526:2	0/1:0,100:33:100:1.00:2
chr12	50821551	rs146142861	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,8:30:14:0.571:2	./.	./.	./.
chr12	50848132	rs17124706	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,16:29:31:0.516:2	./.	./.	./.	./.	./.
chr12	50869511	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,25:32:55:0.455:2	./.
chr12	50869599	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,8:31:120:0.067:2	./.	./.	./.
chr12	50869600	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,8:31:119:0.067:2	./.	./.	./.
chr12	51080364	rs74751916	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,27:33:50:0.540:2	./.	./.
chr12	51089734	rs11169524	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:37,18:33:55:0.327:2	0/1:33,16:33:49:0.327:2	./.	0/1:40,30:33:70:0.429:2	./.	0/1:2,59:33:61:0.967:2	0/1:44,29:33:73:0.397:2	0/1:73,44:32:117:0.376:2	0/1:48,42:33:90:0.467:2	0/1:32,38:33:70:0.543:2	0/1:48,41:33:89:0.461:2
chr12	51115128	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,6:33:195:0.031:2	./.	./.	./.	./.
chr12	51135275	rs1866422	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:30:63:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,84:30:84:1.00:2	0/1:0,82:30:82:1.00:2	0/1:0,107:30:107:1.00:2	0/1:0,99:30:99:1.00:2	0/1:0,110:30:110:1.00:2	0/1:0,99:31:99:1.00:2	0/1:0,83:30:83:1.00:2	0/1:0,83:29:83:1.00:2
chr12	51203371	rs1129406	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,16:32:32:0.500:2	./.	./.	0/1:11,10:31:21:0.476:2	0/1:24,5:31:29:0.172:2	0/1:0,40:30:40:1.00:2	0/1:0,19:31:19:1.00:2	0/1:13,23:31:36:0.639:2	0/1:27,36:32:63:0.571:2	0/1:22,20:31:42:0.476:2	0/1:29,24:32:53:0.453:2
chr12	51208122	rs2230674	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:90,54:32:144:0.375:2	./.	./.	./.	./.	./.	./.
chr12	51236802	rs10876100	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,49:31:89:0.551:2	0/1:2,106:31:108:0.981:2	./.	./.	0/1:48,38:31:86:0.442:2	0/1:48,41:33:89:0.461:2	./.	0/1:27,18:32:45:0.400:2
chr12	51236858	rs370303077	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,16:31:40:0.400:2	./.	./.	./.	./.	./.
chr12	51236931	rs829121	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,5:30:5:1.00:2	./.	./.	0/1:0,13:30:13:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,9:31:9:1.00:2
chr12	51237816	rs861204	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,13:31:34:0.382:2	0/1:37,24:31:62:0.393:2
chr12	51252568	rs373180169	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,9:31:17:0.529:2	./.	./.	./.	./.
chr12	51354803	rs12306808	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,48:30:134:0.358:2	0/1:0,70:30:70:1.00:2	./.	./.	0/1:70,49:31:119:0.412:2	0/1:86,85:32:171:0.497:2	0/1:59,56:31:115:0.487:2	./.
chr12	51386066	rs1048230	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:21,38:31:59:0.644:2	0/1:13,11:31:24:0.458:2	./.	./.	./.	./.	./.	0/1:48,53:31:101:0.525:2	./.	./.	0/1:25,55:31:80:0.688:2
chr12	51393116	rs224454	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,46:33:105:0.438:2	0/1:4,75:32:79:0.949:2	./.	./.	0/1:116,38:32:154:0.247:2	0/1:79,54:33:134:0.406:2	0/1:57,55:33:112:0.491:2	./.
chr12	51404467	rs427020	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,39:31:99:0.394:2	0/1:35,24:31:59:0.407:2	0/1:0,9:31:9:1.00:2	0/1:82,52:31:134:0.388:2	./.	./.	0/1:2,91:31:93:0.978:2	./.	0/1:74,76:31:150:0.507:2	./.	0/1:72,61:32:135:0.459:2
chr12	51442944	rs12379	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:87,61:31:148:0.412:2	0/1:38,17:31:55:0.309:2	./.	0/1:86,57:30:143:0.399:2	0/1:48,40:30:88:0.455:2	./.	0/1:154,5:30:159:0.031:2	0/1:0,107:30:107:1.00:2	0/1:86,68:32:154:0.442:2	0/1:0,122:31:122:1.00:2	0/1:87,64:31:152:0.424:2
chr12	51467836	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,4:30:85:0.047:2	./.	./.	./.	./.	./.	./.
chr12	51489009	rs13463	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:7,9:32:16:0.563:2	0/1:7,3:33:10:0.300:2	./.	0/1:21,12:32:33:0.364:2	./.	./.	./.	./.	./.	./.	./.
chr12	51634804	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,7:31:76:0.092:2	./.	./.	./.	./.
chr12	51636259	rs1049467	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,142:32:142:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,187:31:187:1.00:2	0/1:1,167:31:168:0.994:2	0/1:0,174:31:174:1.00:2	0/1:100,68:31:169:0.405:2	0/1:0,187:31:187:1.00:2	0/1:84,101:32:185:0.546:2	0/1:2,130:31:132:0.985:2	0/1:101,85:31:187:0.457:2
chr12	51681903	rs7954976	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:32:79:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,82:33:82:1.00:2	0/1:65,51:32:116:0.440:2	0/1:0,143:32:143:1.00:2	0/1:0,114:32:114:1.00:2	0/1:0,131:32:131:1.00:2	0/1:0,117:33:118:1.00:2	0/1:0,85:32:85:1.00:2	0/1:77,70:32:147:0.476:2
chr12	51685831	rs3210837	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:32:70:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,7:32:7:1.00:2	0/1:2,88:33:90:0.978:2	0/1:55,33:31:88:0.375:2	0/1:47,43:32:90:0.478:2	0/1:0,74:32:74:1.00:2	0/1:1,115:32:116:0.991:2	0/1:39,53:33:92:0.576:2	0/1:38,39:33:77:0.506:2	0/1:49,41:32:90:0.456:2
chr12	51693021	rs142121602	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,23:32:40:0.575:2	./.	./.	./.
chr12	51696500	rs7975715	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,40:31:82:0.488:2	./.	./.	./.	./.	./.	0/1:62,37:31:99:0.374:2
chr12	51707626	rs7312857	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:74,49:31:123:0.398:2	./.	./.	./.	./.	./.	0/1:111,76:31:187:0.406:2
chr12	51723499	rs17860364	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,3:31:14:0.214:2	./.	./.	./.	./.	./.	0/1:12,14:30:26:0.538:2
chr12	51733734	rs17860317	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,25:32:71:0.352:2	./.	./.	./.	./.	./.	0/1:29,26:32:55:0.473:2
chr12	51737562	rs17860300	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,13:31:47:0.277:2	0/1:31,13:32:44:0.295:2	./.	0/1:27,16:33:43:0.372:2	0/1:31,11:32:42:0.262:2	0/1:40,24:31:64:0.375:2	0/1:35,16:31:51:0.314:2	0/1:0,27:32:27:1.00:2	0/1:42,22:33:64:0.344:2	0/1:39,23:30:62:0.371:2	./.
chr12	51737607	rs17860299	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,16:31:22:0.727:2	./.	./.	./.	./.	./.	0/1:24,28:33:52:0.538:2
chr12	51739648	rs17860287	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,14:30:31:0.452:2	./.	./.	./.	./.	./.	0/1:11,30:30:41:0.732:2
chr12	51740385	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,7:30:34:0.206:2	./.	./.	./.	./.	./.	./.
chr12	51740388	rs907354	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:32:58:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,3:31:3:1.00:2	0/1:1,64:31:65:0.985:2	./.	0/1:0,70:30:70:1.00:2	0/1:0,80:31:80:1.00:2	./.	0/1:0,81:32:81:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,61:31:61:1.00:2
chr12	51740409	rs117443541	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:70,7:33:77:0.091:2	0/1:35,7:31:42:0.167:2	./.	0/1:75,10:32:85:0.118:2	0/1:1,19:31:20:0.950:2	0/1:81,11:31:92:0.120:2	0/1:92,8:30:100:0.080:2	0/1:0,27:32:27:1.00:2	0/1:89,9:33:98:0.092:2	0/1:78,10:32:88:0.114:2	0/1:68,9:31:77:0.117:2
chr12	51740410	rs116944010	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:71,7:32:78:0.090:2	0/1:35,7:29:42:0.167:2	./.	0/1:74,10:32:84:0.119:2	0/1:1,19:31:20:0.950:2	0/1:80,11:32:91:0.121:2	0/1:93,8:28:101:0.079:2	0/1:0,27:32:27:1.00:2	0/1:90,9:33:99:0.091:2	0/1:78,9:32:88:0.103:2	0/1:70,9:27:79:0.114:2
chr12	51771040	rs2277379	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,78:33:192:0.406:2	./.	./.	./.	./.	./.
chr12	51856159	rs71449805	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,20:32:46:0.435:2	./.	./.
chr12	51868968	rs200563022	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:98,7:19:106:0.067:2	./.	./.	./.	./.	./.	0/1:95,12:16:107:0.112:2	0/1:103,14:12:117:0.120:2	./.	0/1:83,13:16:97:0.135:2	0/1:90,8:20:98:0.082:2
chr12	52080965	rs4761829	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,174:32:174:1.00:2	0/1:0,189:31:189:1.00:2	0/1:19,18:31:37:0.486:2	0/1:0,186:31:186:1.00:2	0/1:0,189:31:189:1.00:2	0/1:101,94:30:195:0.482:2	0/1:1,189:31:190:0.995:2	0/1:1,185:31:186:0.995:2	0/1:0,178:32:178:1.00:2	0/1:0,189:32:189:1.00:2	0/1:0,178:32:178:1.00:2
chr12	52182545	rs9943809	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,77:30:161:0.478:2	./.	./.	0/1:51,50:31:101:0.495:2	./.
chr12	52184271	rs303815	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,28:31:28:1.00:2	0/1:0,27:32:27:1.00:2	./.	0/1:0,42:32:42:1.00:2	0/1:0,28:32:28:1.00:2	./.	0/1:23,16:33:39:0.410:2	0/1:0,33:32:33:1.00:2	0/1:0,31:33:31:1.00:2	0/1:31,23:31:54:0.426:2	0/1:0,48:32:48:1.00:2
chr12	52200742	rs60637	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:32:94:1.00:2	0/1:0,40:32:40:1.00:2	0/1:7,8:31:15:0.533:2	0/1:0,95:31:95:1.00:2	0/1:0,91:32:91:1.00:2	./.	0/1:69,44:31:113:0.389:2	0/1:1,112:32:113:0.991:2	0/1:0,89:32:89:1.00:2	0/1:36,30:32:66:0.455:2	0/1:0,65:32:65:1.00:2
chr12	52215102	rs303819	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	0/1:0,2:33:2:1.00:2	0/1:0,2:30:2:1.00:2	0/1:0,4:30:4:1.00:2	./.	./.
chr12	52282060	rs697634	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,53:31:94:0.564:2	./.	0/1:49,56:31:105:0.533:2	0/1:4,123:31:127:0.969:2	0/1:0,124:32:124:1.00:2	./.	0/1:52,42:31:94:0.447:2
chr12	52282873	rs697636	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,70:30:168:0.417:2	./.	0/1:94,67:30:161:0.416:2	0/1:3,131:31:135:0.978:2	0/1:1,108:31:109:0.991:2	./.	0/1:1,86:30:87:0.989:2
chr12	52284483	rs7303030	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,4:32:13:0.308:2	./.	./.	./.	0/1:0,5:33:5:1.00:2	./.	0/1:2,6:31:8:0.750:2
chr12	52284500	rs34494292	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,5:28:8:0.625:2	./.	./.	./.
chr12	52284620	rs117498175	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,11:31:25:0.440:2	./.	./.	./.	./.	./.	./.	./.
chr12	52284668	rs12368048	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,47:29:111:0.423:2	./.	0/1:51,46:31:97:0.474:2	0/1:43,34:30:78:0.442:2	0/1:0,44:30:44:1.00:2	./.	0/1:28,29:30:57:0.509:2
chr12	52285086	rs3180417	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,10:29:27:0.370:2	./.	./.	0/1:14,18:31:32:0.563:2
chr12	52307502	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:29:44:0.091:2	./.	./.	./.	./.
chr12	52307814	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,5:29:155:0.032:2	./.	./.	./.	./.	./.
chr12	52374844	rs199535385	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,15:14:80:0.188:2	./.	./.	./.	./.	./.	./.	./.
chr12	52374856	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,10:15:78:0.128:2	./.	./.	0/1:108,16:13:124:0.129:2	./.	./.	./.
chr12	52402998	rs73104710	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,13:32:41:0.317:2	0/1:18,9:32:27:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	52403036	rs11614892	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,18:25:37:0.486:2	./.	./.	./.	./.	./.	./.	./.
chr12	52408477	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,4:30:21:0.190:2	./.	./.	./.	./.	./.	./.
chr12	52408888	rs7974426	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2
chr12	52448157	rs2701124	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,26:32:58:0.448:2	./.	./.	./.	./.	./.	./.	./.
chr12	52565322	rs3741737	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:31:38:1.00:2	0/1:0,29:31:29:1.00:2	0/1:1,5:30:6:0.833:2	0/1:24,36:30:60:0.600:2	0/1:0,38:29:38:1.00:2	0/1:20,20:30:40:0.500:2	0/1:0,54:30:54:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,41:32:41:1.00:2	0/1:1,37:31:38:0.974:2
chr12	52566047	rs3741736	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:31:10:0.500:2	./.	0/1:1,51:31:52:0.981:2	./.	0/1:22,26:32:48:0.542:2	0/1:28,47:31:75:0.627:2	0/1:0,64:32:64:1.00:2	./.	0/1:21,23:32:44:0.523:2
chr12	52627373	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	52631313	rs6580870	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:30:62:1.00:2	0/1:0,32:30:32:1.00:2	0/1:9,9:30:18:0.500:2	0/1:64,44:30:108:0.407:2	0/1:0,51:30:51:1.00:2	0/1:0,76:30:76:1.00:2	0/1:1,72:30:73:0.986:2	0/1:0,85:30:85:1.00:2	0/1:48,36:30:84:0.429:2	0/1:0,58:30:58:1.00:2	0/1:35,58:30:93:0.624:2
chr12	52635360	rs999665	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:34,31:32:65:0.477:2	0/1:17,25:31:42:0.595:2	./.	./.	0/1:64,54:31:118:0.458:2	0/1:41,51:31:92:0.554:2	0/1:2,112:31:115:0.982:2	0/1:1,132:32:133:0.992:2	0/1:62,27:32:89:0.303:2	0/1:43,33:32:76:0.434:2	./.
chr12	52639302	rs2608009	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:32:50:1.00:2	0/1:0,37:31:37:1.00:2	0/1:14,5:33:19:0.263:2	0/1:42,26:31:68:0.382:2	0/1:0,79:32:79:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,86:31:86:1.00:2	0/1:28,48:33:76:0.632:2	0/1:0,58:31:58:1.00:2	0/1:26,27:31:53:0.509:2
chr12	52641986	rs146634518	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:99,4:33:103:0.039:2	./.	./.	./.	./.	./.	./.
chr12	52681056	rs4761856	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,35:32:61:0.574:2	0/1:17,20:32:37:0.541:2	0/1:4,3:30:7:0.429:2	0/1:20,37:31:57:0.649:2	./.	0/1:20,37:31:57:0.649:2	0/1:16,22:31:38:0.579:2	0/1:14,22:32:36:0.611:2	./.	./.	./.
chr12	52681080	rs4761784	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,34:32:58:0.586:2	0/1:16,22:32:38:0.579:2	0/1:3,3:34:6:0.500:2	0/1:12,25:32:37:0.676:2	./.	0/1:14,34:32:48:0.708:2	0/1:9,21:33:30:0.700:2	0/1:15,27:32:42:0.643:2	./.	./.	./.
chr12	52681416	rs7300801	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,33:32:79:0.418:2	0/1:31,26:32:57:0.456:2	0/1:4,8:34:12:0.667:2	0/1:75,46:33:121:0.380:2	0/1:74,56:32:130:0.431:2	./.	./.	0/1:93,69:32:162:0.426:2	0/1:2,78:34:81:0.975:2	0/1:0,67:33:67:1.00:2	0/1:0,53:34:53:1.00:2
chr12	52681437	rs3187034	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,22:28:71:0.310:2	0/1:31,23:29:54:0.426:2	0/1:5,6:30:11:0.545:2	0/1:77,36:29:113:0.319:2	0/1:80,42:29:122:0.344:2	./.	./.	0/1:97,46:29:144:0.322:2	0/1:3,62:30:67:0.954:2	0/1:0,58:30:58:1.00:2	0/1:4,46:29:50:0.920:2
chr12	52681912	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,37:33:126:0.294:2	./.	./.
chr12	52681925	rs6580873	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:28:67:1.00:2	0/1:0,43:28:43:1.00:2	0/1:0,15:28:15:1.00:2	0/1:0,109:28:109:1.00:2	0/1:65,46:28:111:0.414:2	0/1:75,55:29:130:0.423:2	0/1:51,44:28:96:0.463:2	0/1:0,111:28:111:1.00:2	0/1:0,98:28:98:1.00:2	0/1:0,114:28:114:1.00:2	0/1:0,102:28:102:1.00:2
chr12	52682141	rs12812669	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,17:29:46:0.378:2	0/1:13,9:31:22:0.409:2	0/1:4,5:31:9:0.556:2	0/1:28,26:31:54:0.481:2	0/1:23,43:31:66:0.652:2	./.	./.	0/1:28,29:31:57:0.509:2	0/1:30,31:32:63:0.508:2	0/1:31,16:31:47:0.340:2	0/1:28,21:30:49:0.429:2
chr12	52682172	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:32:96:0.042:2	./.	./.
chr12	52683002	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:140,46:32:186:0.247:2	0/1:155,34:32:189:0.180:2	0/1:132,18:32:150:0.120:2	./.	0/1:116,66:31:182:0.363:2	./.	0/1:163,30:32:193:0.155:2	0/1:171,18:33:189:0.095:2	0/1:155,27:33:182:0.148:2	./.	./.
chr12	52684024	rs201846944	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,44:30:187:0.237:2	0/1:158,27:29:185:0.146:2	0/1:148,34:29:182:0.187:2
chr12	52684902	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,36:31:184:0.196:2	./.	./.	./.	./.	./.	0/1:142,46:32:188:0.245:2	0/1:150,33:31:183:0.180:2
chr12	52684953	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:154,33:32:187:0.176:2	0/1:165,29:31:194:0.149:2	./.	./.	0/1:165,27:31:192:0.141:2	./.	./.	0/1:154,30:33:184:0.163:2	./.	./.	./.
chr12	52685096	rs2071588	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:5,8:32:13:0.615:2	./.	./.	0/1:7,3:31:10:0.300:2	./.	./.	./.	./.	./.	./.	./.
chr12	52695754	rs74651927	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,18:30:33:0.545:2	./.	./.	./.	./.	./.	0/1:16,5:32:21:0.238:2	0/1:9,9:29:18:0.500:2
chr12	52695760	rs201694571	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,9:31:17:0.529:2	./.	./.	./.	./.	./.	./.
chr12	52695787	rs112261068	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:26:5:0.600:2	./.	./.	./.	./.	./.	./.	./.
chr12	52695854	rs376835872	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:32:8:0.375:2	./.	./.	./.	./.	0/1:8,3:30:11:0.273:2	./.	./.	./.	./.	./.
chr12	52695922	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:180,5:29:186:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr12	52695940	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:178,4:33:182:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr12	52695997	rs199751260	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:161,33:32:194:0.170:2	0/1:146,42:32:188:0.223:2	./.	./.	0/1:163,33:32:196:0.168:2	./.	./.	0/1:173,23:32:196:0.117:2	./.	./.	./.
chr12	52696048	rs58580222	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,51:31:195:0.262:2	./.	./.	./.	./.	./.	0/1:155,38:30:193:0.197:2	0/1:144,45:31:189:0.238:2
chr12	52696930	rs58717266	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,31:32:180:0.173:2	0/1:139,42:28:181:0.232:2	0/1:142,31:30:173:0.179:2
chr12	52697952	rs144317368	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:156,25:31:181:0.138:2	0/1:155,36:32:191:0.188:2	0/1:120,24:31:144:0.167:2	./.	0/1:112,38:31:150:0.253:2	./.	0/1:168,10:32:178:0.056:2	0/1:155,16:31:171:0.094:2	0/1:123,19:32:142:0.134:2	./.	./.
chr12	52699031	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:32:191:0.021:2	./.	./.	./.	./.
chr12	52699033	rs61914259	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:100,13:31:113:0.115:2	0/1:67,8:32:75:0.107:2	0/1:17,6:28:23:0.261:2	0/1:140,23:30:163:0.141:2	0/1:163,7:27:170:0.041:2	0/1:158,8:31:166:0.048:2	0/1:182,14:31:196:0.071:2	0/1:170,9:30:179:0.050:2	0/1:159,32:32:192:0.168:2	0/1:142,13:32:155:0.084:2	0/1:128,14:31:143:0.099:2
chr12	52699044	rs61915660	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:112,11:30:123:0.089:2	0/1:70,4:32:74:0.054:2	0/1:18,4:30:22:0.182:2	0/1:164,17:30:182:0.094:2	./.	0/1:176,5:29:181:0.028:2	0/1:188,8:30:196:0.041:2	0/1:185,6:29:191:0.031:2	./.	0/1:157,13:31:170:0.076:2	0/1:144,11:30:155:0.071:2
chr12	52699548	rs2032360	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,39:29:82:0.476:2	0/1:30,29:29:59:0.492:2	0/1:14,11:31:25:0.440:2	0/1:129,22:28:151:0.146:2	0/1:1,154:29:155:0.994:2	./.	0/1:94,71:30:165:0.430:2	0/1:57,81:29:138:0.587:2	0/1:51,79:30:130:0.608:2	0/1:105,45:28:150:0.300:2	0/1:105,33:28:138:0.239:2
chr12	52699846	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,4:32:93:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr12	52699861	rs4761788	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,4:31:105:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr12	52700018	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:31:135:0.030:2	./.	./.	./.	./.
chr12	52700020	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,6:28:132:0.045:2	./.	./.	./.	./.
chr12	52708420	rs2857671	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,27:27:72:0.380:2	0/1:27,25:30:52:0.481:2	./.	0/1:68,44:27:112:0.393:2	0/1:0,90:27:93:1.00:2	0/1:2,88:27:93:0.978:2	0/1:85,41:27:126:0.325:2	0/1:74,48:27:123:0.393:2	0/1:0,82:28:86:1.00:2	0/1:0,63:27:66:1.00:2	0/1:0,80:28:82:1.00:2
chr12	52708565	rs2857670	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,19:31:36:0.528:2	0/1:8,13:31:21:0.619:2	./.	0/1:30,14:31:44:0.318:2	0/1:0,22:31:22:1.00:2	0/1:0,50:30:50:1.00:2	0/1:24,17:31:41:0.415:2	0/1:34,12:32:46:0.261:2	0/1:0,24:31:24:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,23:31:23:1.00:2
chr12	52709880	rs2852468	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,7:31:23:0.304:2	./.	0/1:1,14:31:15:0.933:2	./.	./.	0/1:9,8:30:17:0.471:2	0/1:0,6:31:6:1.00:2	0/1:0,12:31:12:1.00:2
chr12	52709883	rs2248473	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,7:32:21:0.333:2	./.	0/1:1,14:32:15:0.933:2	./.	./.	0/1:9,8:33:17:0.471:2	0/1:0,6:33:6:1.00:2	0/1:0,12:32:12:1.00:2
chr12	52710309	rs2257286	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,57:31:116:0.491:2	./.	0/1:1,134:31:135:0.993:2	./.	./.	0/1:63,53:32:116:0.457:2	0/1:2,104:32:106:0.981:2	0/1:5,94:31:99:0.949:2
chr12	52710715	rs2857669	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,77:32:171:0.450:2	./.	0/1:2,135:32:137:0.985:2	./.	./.	0/1:84,71:33:155:0.458:2	0/1:0,114:33:114:1.00:2	0/1:3,89:33:92:0.967:2
chr12	52710721	rs2852464	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,79:33:182:0.434:2	./.	0/1:4,143:32:147:0.973:2	./.	./.	0/1:87,73:33:161:0.456:2	0/1:0,116:33:116:1.00:2	0/1:4,88:33:93:0.957:2
chr12	52710790	rs143202217	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:33:128:0.031:2	./.	./.	./.
chr12	52711492	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.	./.
chr12	52711549	rs2857667	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,37:31:73:0.514:2	./.	0/1:2,53:30:55:0.964:2	./.	./.	0/1:25,27:31:52:0.519:2	0/1:2,85:31:87:0.977:2	0/1:0,56:31:56:1.00:2
chr12	52712975	rs3741715	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:67,40:31:107:0.374:2	0/1:39,29:32:68:0.426:2	0/1:12,10:31:23:0.455:2	./.	0/1:0,153:30:153:1.00:2	./.	0/1:83,67:31:150:0.447:2	0/1:82,81:31:163:0.497:2	0/1:85,79:31:164:0.482:2	./.	0/1:76,53:31:129:0.411:2
chr12	52713080	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:32:99:0.040:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	52713088	rs2857663	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,62:32:163:0.380:2	./.	./.	./.	./.	./.	0/1:80,75:32:155:0.484:2	./.
chr12	52713092	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:33:89:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	52713122	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:65,4:31:69:0.058:2	./.	./.	./.	./.	0/1:110,4:31:114:0.035:2	./.	./.	./.	./.
chr12	52714820	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,6:29:196:0.031:2	./.
chr12	52714868	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,5:32:120:0.042:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	52714883	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,5:29:107:0.047:2	./.	./.
chr12	52714889	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:31:101:0.040:2	./.	./.	0/1:89,5:32:94:0.053:2	0/1:75,4:31:79:0.051:2	./.
chr12	52756665	rs1621938	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:35:113:0.035:2	./.	./.
chr12	52756695	rs143063799	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,51:31:136:0.375:2	./.	./.	./.
chr12	52756731	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,6:29:131:0.046:2	0/1:110,6:31:116:0.052:2	./.	./.
chr12	52758778	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:104,8:28:112:0.071:2	./.	./.	./.	0/1:111,10:27:121:0.083:2	0/1:105,8:29:113:0.071:2	0/1:96,7:27:103:0.068:2	./.	./.	./.	0/1:87,9:27:96:0.094:2
chr12	52758784	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:103,8:31:111:0.072:2	./.	./.	./.	0/1:115,10:26:125:0.080:2	0/1:101,7:29:109:0.065:2	0/1:104,5:27:109:0.046:2	./.	./.	./.	0/1:87,8:31:95:0.084:2
chr12	52760902	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:146,4:31:150:0.027:2	./.	./.	0/1:138,5:32:143:0.035:2	./.	./.	./.
chr12	52760957	rs61630004	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:32:13:0.462:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	52773702	rs1791611	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,42:32:42:1.00:2	0/1:1,12:32:13:0.923:2	./.	./.	0/1:15,14:31:29:0.483:2	0/1:26,15:31:41:0.366:2	./.	0/1:25,24:31:49:0.490:2	./.	./.	./.
chr12	52774158	rs951772	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,32:31:32:1.00:2	0/1:0,25:31:25:1.00:2	./.	./.	0/1:27,22:30:49:0.449:2	0/1:15,23:31:38:0.605:2	./.	0/1:13,35:30:48:0.729:2	./.	./.	./.
chr12	52774235	rs951773	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:28:63:1.00:2	0/1:0,54:29:54:1.00:2	0/1:3,7:30:10:0.700:2	0/1:0,68:29:68:1.00:2	0/1:2,93:29:96:0.979:2	0/1:1,80:28:81:0.988:2	0/1:54,40:29:94:0.426:2	0/1:62,53:30:116:0.461:2	0/1:0,48:28:48:1.00:2	0/1:0,54:28:54:1.00:2	0/1:0,42:30:42:1.00:2
chr12	52774305	rs1732293	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,60:29:60:1.00:2	0/1:0,30:30:30:1.00:2	0/1:5,6:28:11:0.545:2	./.	0/1:35,40:28:75:0.533:2	0/1:35,38:30:73:0.521:2	./.	0/1:47,39:29:86:0.453:2	./.	./.	./.
chr12	52775167	rs139009727	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,34:31:56:0.607:2	./.	./.	./.	./.
chr12	52777439	rs1614888	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,73:29:74:0.986:2	0/1:0,34:30:34:1.00:2	./.	./.	0/1:46,45:30:91:0.495:2	0/1:37,27:30:64:0.422:2	./.	0/1:61,40:29:101:0.396:2	./.	./.	./.
chr12	52777502	rs1945297	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,84:31:86:0.977:2	0/1:0,46:31:46:1.00:2	0/1:6,3:32:9:0.333:2	./.	0/1:1,66:31:67:0.985:2	0/1:57,30:31:87:0.345:2	0/1:69,65:32:134:0.485:2	0/1:79,39:31:118:0.331:2	0/1:74,72:31:146:0.493:2	./.	./.
chr12	52777513	rs2245203	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,76:31:78:0.974:2	0/1:0,49:32:49:1.00:2	0/1:6,3:32:9:0.333:2	./.	0/1:36,27:31:63:0.429:2	0/1:65,33:31:99:0.337:2	./.	0/1:84,36:32:120:0.300:2	./.	./.	./.
chr12	52777578	rs1613931	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,16:30:18:0.889:2	0/1:0,21:31:21:1.00:2	./.	./.	0/1:13,10:32:23:0.435:2	0/1:40,9:31:49:0.184:2	./.	0/1:46,7:28:53:0.132:2	./.	./.	./.
chr12	52777580	rs1613929	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,16:31:18:0.889:2	0/1:0,21:31:21:1.00:2	./.	./.	0/1:13,10:31:23:0.435:2	0/1:41,9:31:50:0.180:2	./.	0/1:45,7:29:52:0.135:2	./.	./.	./.
chr12	52778947	rs1791631	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,57:30:58:0.983:2	0/1:0,30:29:30:1.00:2	./.	./.	0/1:39,27:29:66:0.409:2	0/1:51,42:30:93:0.452:2	./.	0/1:45,44:29:89:0.494:2	./.	./.	./.
chr12	52779244	rs1732304	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,23:30:24:0.958:2	0/1:0,24:29:24:1.00:2	0/1:1,7:30:8:0.875:2	./.	0/1:53,12:31:65:0.185:2	0/1:59,24:29:83:0.289:2	./.	0/1:45,14:28:59:0.237:2	./.	./.	./.
chr12	52788779	rs201660946	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,16:12:90:0.178:2	0/1:87,14:11:102:0.139:2	./.	0/1:113,19:12:132:0.144:2	./.	0/1:76,11:13:87:0.126:2	./.	0/1:45,11:13:56:0.196:2
chr12	52788928	rs2658658	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,77:31:77:1.00:2	./.	0/1:46,40:32:86:0.465:2	./.	./.	0/1:60,39:32:99:0.394:2	0/1:0,63:31:63:1.00:2	0/1:1,65:32:66:0.985:2
chr12	52788945	rs1732263	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:31:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	52789509	rs1732264	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:31:45:1.00:2	0/1:0,33:31:33:1.00:2	0/1:6,10:32:16:0.625:2	0/1:0,67:32:68:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,69:32:69:1.00:2	0/1:62,31:30:93:0.333:2	0/1:64,40:32:104:0.385:2	0/1:2,53:33:55:0.964:2	0/1:0,51:31:51:1.00:2	0/1:0,51:31:51:1.00:2
chr12	52789597	rs1732265	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,27:33:27:1.00:2	0/1:2,10:32:12:0.833:2	0/1:0,50:33:50:1.00:2	0/1:1,51:32:52:0.981:2	0/1:0,63:32:63:1.00:2	0/1:29,24:34:53:0.453:2	0/1:46,33:32:79:0.418:2	0/1:0,42:34:42:1.00:2	0/1:1,46:33:47:0.979:2	0/1:0,36:33:36:1.00:2
chr12	52789605	rs1732266	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:31:36:1.00:2	0/1:0,23:31:23:1.00:2	0/1:2,10:31:12:0.833:2	0/1:0,43:31:44:1.00:2	0/1:1,49:30:50:0.980:2	0/1:0,56:30:56:1.00:2	0/1:25,18:31:43:0.419:2	0/1:42,30:30:72:0.417:2	0/1:0,35:31:35:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,32:31:32:1.00:2
chr12	52790706	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:29:100:0.040:2	./.	./.	./.
chr12	52818377	rs61730614	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:43,67:32:110:0.609:2	0/1:38,31:32:69:0.449:2	0/1:8,5:32:13:0.385:2	./.	0/1:61,64:32:125:0.512:2	./.	./.	0/1:61,53:33:114:0.465:2	./.	./.	./.
chr12	52818504	rs298104	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,44:30:44:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,4:30:4:1.00:2	./.	0/1:0,51:29:51:1.00:2	0/1:14,23:30:37:0.622:2	0/1:0,46:30:46:1.00:2	0/1:0,53:29:53:1.00:2	0/1:19,28:31:47:0.596:2	0/1:16,22:31:38:0.579:2	0/1:17,17:31:34:0.500:2
chr12	52822136	rs199509605	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:45,3:33:48:0.063:2	./.	./.	0/1:61,6:27:67:0.090:2	0/1:65,6:26:71:0.085:2	./.	0/1:68,5:23:73:0.068:2	0/1:70,5:27:75:0.067:2	./.	0/1:49,5:25:54:0.093:2	./.
chr12	52822142	rs2232405	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,40:29:85:0.471:2	./.	./.	./.	./.	./.
chr12	52822258	rs401926	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,76:32:76:1.00:2	0/1:0,44:32:44:1.00:2	0/1:7,3:33:10:0.300:2	./.	0/1:0,101:32:101:1.00:2	0/1:49,39:32:88:0.443:2	0/1:0,79:33:79:1.00:2	0/1:1,104:32:105:0.990:2	0/1:41,32:33:73:0.438:2	0/1:30,37:32:67:0.552:2	0/1:43,33:32:76:0.434:2
chr12	52824352	rs395623	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:43,34:32:77:0.442:2	0/1:29,33:32:62:0.532:2	0/1:10,7:32:17:0.412:2	./.	0/1:93,90:32:183:0.492:2	./.	0/1:4,168:33:172:0.977:2	0/1:94,78:32:172:0.453:2	0/1:66,65:32:131:0.496:2	0/1:46,50:32:96:0.521:2	0/1:42,60:31:102:0.588:2
chr12	52825363	rs1798640	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,79:33:79:1.00:2	0/1:1,59:32:60:0.983:2	0/1:9,8:33:17:0.471:2	./.	0/1:0,143:32:143:1.00:2	0/1:49,56:32:105:0.533:2	0/1:1,140:33:141:0.993:2	0/1:0,138:33:138:1.00:2	0/1:69,59:34:128:0.461:2	0/1:39,58:33:97:0.598:2	0/1:74,51:33:125:0.408:2
chr12	52827608	rs2232387	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,73:29:140:0.525:2	./.	./.	./.	./.	./.
chr12	52827740	rs2232386	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:49,39:31:88:0.443:2	0/1:27,25:33:52:0.481:2	./.	./.	0/1:54,39:32:93:0.419:2	./.	./.	0/1:45,47:32:92:0.511:2	./.	./.	./.
chr12	52827786	rs2232385	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,25:32:54:0.463:2	./.	./.	./.	./.	./.
chr12	52827818	rs298109	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,47:28:47:1.00:2	0/1:0,28:27:28:1.00:2	./.	./.	0/1:0,48:28:48:1.00:2	0/1:18,25:28:43:0.581:2	0/1:0,45:28:45:1.00:2	0/1:1,59:27:60:0.983:2	0/1:26,26:29:52:0.500:2	0/1:20,15:29:35:0.429:2	0/1:31,30:27:61:0.492:2
chr12	52840983	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,5:28:114:0.044:2	./.	0/1:141,5:30:147:0.034:2	./.	./.	./.
chr12	52841065	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,5:30:113:0.044:2	./.	0/1:158,5:31:163:0.031:2	./.	./.	./.
chr12	52841166	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:52,5:32:57:0.088:2	./.	./.	0/1:83,4:31:87:0.046:2	0/1:80,4:29:84:0.048:2	0/1:91,5:32:97:0.052:2	./.	0/1:113,5:32:118:0.042:2	./.	./.	0/1:73,4:30:77:0.052:2
chr12	52841174	rs61746355	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,40:32:119:0.336:2	./.	./.	./.
chr12	52841192	rs147008947	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,4:31:83:0.048:2	./.	0/1:90,4:31:94:0.043:2	./.	0/1:109,5:31:114:0.044:2	./.	./.	0/1:69,4:31:74:0.055:2
chr12	52841202	rs148044538	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:30:87:0.046:2	./.	0/1:105,5:31:110:0.045:2	./.	./.	0/1:72,4:31:76:0.053:2
chr12	52841205	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,4:32:47:0.085:2	./.	./.	0/1:76,5:28:81:0.062:2	0/1:87,4:30:91:0.044:2	0/1:83,6:32:89:0.067:2	./.	0/1:102,4:32:106:0.038:2	./.	./.	./.
chr12	52841309	rs413862	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:33:169:0.024:2	./.	./.	./.
chr12	52841627	rs145280284	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:103,6:30:109:0.055:2	0/1:62,5:32:67:0.075:2	0/1:19,3:31:22:0.136:2	./.	0/1:191,5:32:196:0.026:2	./.	0/1:185,5:31:190:0.026:2	0/1:187,11:30:198:0.056:2	0/1:152,10:32:162:0.062:2	0/1:121,5:31:126:0.040:2	0/1:102,12:30:114:0.105:2
chr12	52841672	rs142297644	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:134,19:32:153:0.124:2	0/1:103,4:33:107:0.037:2	./.	./.	0/1:172,16:32:188:0.085:2	./.	./.	0/1:186,7:32:193:0.036:2	./.	./.	./.
chr12	52841765	rs388626	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,89:33:89:1.00:2	0/1:0,69:32:69:1.00:2	0/1:9,10:32:19:0.526:2	./.	0/1:2,133:32:135:0.985:2	0/1:59,51:32:110:0.464:2	0/1:1,136:32:137:0.993:2	0/1:1,137:32:138:0.993:2	0/1:57,64:33:121:0.529:2	0/1:62,48:32:110:0.436:2	0/1:49,52:32:101:0.515:2
chr12	52841771	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:124,4:34:128:0.031:2	./.	./.	./.	./.	./.	./.
chr12	52842736	rs437014	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,55:32:56:1.00:2	0/1:0,36:31:36:1.00:2	./.	./.	0/1:2,53:31:55:0.964:2	0/1:96,28:31:124:0.226:2	0/1:3,57:32:60:0.950:2	0/1:1,68:31:69:0.986:2	0/1:99,34:32:133:0.256:2	0/1:79,24:32:103:0.233:2	0/1:109,34:31:143:0.238:2
chr12	52843581	rs382894	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:157,15:32:172:0.087:2	0/1:77,7:32:84:0.083:2	./.	./.	0/1:183,6:28:189:0.032:2	0/1:193,5:33:198:0.025:2	./.	0/1:192,6:31:198:0.030:2	./.	0/1:156,7:33:163:0.043:2	0/1:188,9:31:197:0.046:2
chr12	52843779	rs380379	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:142,45:29:187:0.241:2	0/1:127,33:28:160:0.206:2	0/1:29,5:30:34:0.147:2	./.	0/1:158,40:29:198:0.202:2	0/1:176,20:29:196:0.102:2	0/1:157,38:30:195:0.195:2	0/1:164,26:30:190:0.137:2	0/1:170,22:29:192:0.115:2	0/1:174,15:28:189:0.079:2	0/1:160,32:29:192:0.167:2
chr12	52843783	.	T	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:169,20:33:189:0.106:2	0/1:149,15:32:164:0.091:2	./.	./.	0/1:163,36:33:199:0.181:2	0/1:177,19:32:196:0.097:2	0/1:175,23:33:198:0.116:2	0/1:187,9:32:196:0.046:2	./.	./.	./.
chr12	52843875	rs71453289	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:131,6:33:137:0.044:2	./.	./.	0/1:129,6:31:135:0.044:2	./.	./.	./.	./.	0/1:172,4:33:176:0.023:2	./.
chr12	52844243	rs28414881	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:117,20:32:137:0.146:2	0/1:118,15:30:133:0.113:2	0/1:48,10:32:58:0.172:2	./.	./.	./.	0/1:159,35:31:194:0.180:2	0/1:166,30:32:196:0.153:2	0/1:162,32:31:194:0.165:2	0/1:145,22:32:167:0.132:2	0/1:163,25:32:189:0.133:2
chr12	52844246	rs28542657	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:106,20:30:128:0.159:2	0/1:113,15:32:129:0.117:2	0/1:47,10:32:57:0.175:2	./.	./.	./.	0/1:154,36:31:191:0.189:2	0/1:163,30:31:195:0.155:2	0/1:158,33:31:192:0.173:2	0/1:143,23:30:169:0.139:2	0/1:159,24:33:186:0.131:2
chr12	52844265	rs652423	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:109,57:33:166:0.343:2	0/1:70,63:32:133:0.474:2	0/1:38,15:33:53:0.283:2	./.	0/1:106,87:31:193:0.451:2	0/1:95,101:32:196:0.515:2	0/1:52,138:33:190:0.726:2	0/1:118,79:33:197:0.401:2	0/1:117,73:33:190:0.384:2	0/1:114,83:32:197:0.421:2	0/1:117,75:32:193:0.391:2
chr12	52844302	rs201956073	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,58:32:182:0.319:2	0/1:62,48:32:110:0.436:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	52845435	rs80158424	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:142,46:31:188:0.245:2	0/1:133,35:31:168:0.208:2	./.	./.	0/1:117,74:30:191:0.387:2	0/1:145,41:29:186:0.220:2	0/1:154,41:31:195:0.210:2	0/1:156,36:30:192:0.188:2	./.	./.	./.
chr12	52845531	rs140878617	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:153,26:30:179:0.145:2	0/1:137,25:30:162:0.154:2	0/1:34,14:29:48:0.292:2	./.	./.	./.	0/1:161,35:30:196:0.179:2	0/1:165,28:31:193:0.145:2	0/1:151,30:30:181:0.166:2	0/1:139,50:30:189:0.265:2	0/1:135,45:30:181:0.250:2
chr12	52845574	rs144860693	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:104,33:31:137:0.241:2	0/1:86,34:31:120:0.283:2	./.	./.	0/1:132,37:30:169:0.219:2	./.	./.	0/1:110,38:30:148:0.257:2	./.	./.	./.
chr12	52845601	rs201122967	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:97,7:26:104:0.067:2	0/1:78,11:28:90:0.124:2	0/1:23,6:27:29:0.207:2	./.	./.	./.	0/1:96,13:30:109:0.119:2	0/1:123,11:26:134:0.082:2	0/1:115,17:30:133:0.129:2	0/1:100,15:30:115:0.130:2	0/1:74,15:29:89:0.169:2
chr12	52845665	rs141114189	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,3:32:18:0.167:2	./.	./.	./.	0/1:103,6:31:109:0.055:2	./.	0/1:66,42:28:109:0.389:2	./.	./.
chr12	52845716	rs445185	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:31:108:0.037:2	./.	./.	./.	./.	./.
chr12	52845801	rs428894	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:26,61:32:87:0.701:2	0/1:19,33:31:52:0.635:2	0/1:10,9:31:19:0.474:2	./.	0/1:18,76:31:94:0.809:2	0/1:73,36:32:109:0.330:2	0/1:27,64:32:91:0.703:2	0/1:39,75:32:114:0.658:2	0/1:47,31:32:78:0.397:2	0/1:50,31:33:81:0.383:2	0/1:25,18:34:43:0.419:2
chr12	52862974	rs112885852	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,5:29:167:0.030:2	./.	./.	./.	./.
chr12	52863038	rs410562	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:47,37:31:84:0.440:2	0/1:16,17:29:33:0.515:2	0/1:1,4:31:5:0.800:2	./.	./.	./.	0/1:62,72:31:134:0.537:2	0/1:66,40:31:106:0.377:2	0/1:42,31:30:73:0.425:2	0/1:38,47:31:85:0.553:2	0/1:53,45:31:98:0.459:2
chr12	52863064	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:74,5:31:79:0.063:2	./.	./.	./.	0/1:108,6:27:114:0.053:2	./.	./.	./.	0/1:51,3:33:54:0.056:2	./.	./.
chr12	52863074	rs391214	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:70,5:31:75:0.067:2	./.	./.	./.	0/1:116,5:32:121:0.041:2	./.	./.	./.	0/1:55,3:34:59:0.052:2	./.	./.
chr12	52863198	rs11540298	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:150,5:32:155:0.032:2	./.	./.	./.	./.	./.	./.
chr12	52863213	rs412533	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:40,36:32:76:0.474:2	0/1:43,28:32:71:0.394:2	0/1:3,8:32:11:0.727:2	./.	./.	./.	0/1:94,70:32:164:0.427:2	0/1:79,68:31:147:0.463:2	0/1:74,54:32:128:0.422:2	0/1:53,53:32:106:0.500:2	0/1:54,53:32:107:0.495:2
chr12	52863564	rs3894847	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:68,55:31:123:0.447:2	0/1:33,31:31:64:0.484:2	./.	./.	0/1:131,62:30:193:0.321:2	./.	./.	0/1:91,95:31:187:0.511:2	./.	./.	./.
chr12	52863621	rs382367	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,128:32:128:1.00:2	0/1:0,69:31:69:1.00:2	0/1:10,9:32:19:0.474:2	./.	0/1:126,52:32:178:0.292:2	./.	0/1:100,84:32:184:0.457:2	0/1:2,162:32:164:0.988:2	0/1:96,75:33:171:0.439:2	0/1:67,79:32:146:0.541:2	0/1:91,44:32:135:0.326:2
chr12	52865244	rs145658614	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:166,4:31:170:0.024:2	./.	./.	./.	0/1:191,6:29:197:0.030:2	0/1:189,7:30:196:0.036:2	0/1:193,7:30:200:0.035:2	./.	./.	./.	0/1:176,5:31:181:0.028:2
chr12	52865298	rs201562541	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:29:90:0.044:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	52865439	rs28499430	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:107,9:33:116:0.078:2	./.	./.	./.	0/1:78,4:34:82:0.049:2	./.	./.	./.	./.	./.	./.
chr12	52865443	rs7487256	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:85,39:32:124:0.315:2	0/1:40,38:31:78:0.487:2	./.	./.	0/1:6,79:32:85:0.929:2	0/1:96,48:32:144:0.333:2	0/1:68,57:33:126:0.456:2	0/1:92,81:33:173:0.468:2	./.	./.	./.
chr12	52865900	rs117030701	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:51,102:31:153:0.667:2	0/1:41,66:31:107:0.617:2	./.	./.	0/1:89,71:29:160:0.444:2	./.	./.	0/1:65,91:29:156:0.583:2	./.	./.	./.
chr12	52865918	rs425073	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:95,25:32:120:0.208:2	0/1:71,15:32:86:0.174:2	0/1:12,11:34:23:0.478:2	./.	./.	./.	0/1:107,50:32:157:0.318:2	0/1:137,46:32:183:0.251:2	0/1:100,25:33:125:0.200:2	0/1:77,32:32:109:0.294:2	0/1:113,25:33:139:0.181:2
chr12	52865925	rs17099602	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:94,19:30:113:0.168:2	0/1:74,10:32:84:0.119:2	0/1:9,7:32:16:0.438:2	./.	./.	./.	0/1:126,42:31:168:0.250:2	0/1:148,40:31:188:0.213:2	0/1:101,24:32:125:0.192:2	0/1:84,28:31:112:0.250:2	0/1:116,24:31:140:0.171:2
chr12	52865962	rs371638126	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,5:31:133:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	52865990	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:31:131:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	52866060	rs11608915	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,172:32:175:0.983:2	./.	0/1:97,77:31:175:0.443:2	./.	./.	0/1:11,112:33:123:0.911:2	0/1:7,93:32:100:0.930:2	0/1:4,83:32:87:0.954:2
chr12	52867059	rs199519828	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,9:28:87:0.103:2	0/1:110,6:31:116:0.052:2	./.	./.	./.
chr12	52867063	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,6:30:77:0.078:2	0/1:98,4:30:103:0.039:2	./.	./.	./.
chr12	52867066	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,5:31:73:0.068:2	0/1:90,4:31:94:0.043:2	./.	./.	./.
chr12	52867094	rs151117600	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:25,7:33:32:0.219:2	0/1:11,9:32:20:0.450:2	./.	./.	0/1:27,11:31:38:0.289:2	0/1:143,6:31:150:0.040:2	0/1:24,6:32:30:0.200:2	0/1:52,10:31:62:0.161:2	./.	./.	./.
chr12	52867105	rs1053684	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,4:32:26:0.154:2	0/1:16,5:32:21:0.238:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	52867190	rs394598	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:90,16:30:106:0.151:2	0/1:75,7:29:82:0.085:2	0/1:29,5:29:34:0.147:2	./.	./.	./.	0/1:145,36:29:181:0.199:2	0/1:174,17:30:191:0.089:2	0/1:167,26:31:193:0.135:2	0/1:136,17:29:153:0.111:2	0/1:163,11:31:174:0.063:2
chr12	52867233	rs200653200	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:90,21:29:112:0.189:2	0/1:53,15:28:68:0.221:2	./.	./.	0/1:123,34:31:158:0.217:2	./.	./.	0/1:129,29:31:158:0.184:2	./.	./.	./.
chr12	52867260	rs149028472	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:73,26:31:99:0.263:2	0/1:53,4:33:57:0.070:2	0/1:18,3:32:21:0.143:2	./.	./.	./.	0/1:114,25:31:139:0.180:2	0/1:83,23:31:106:0.217:2	0/1:114,16:32:130:0.123:2	0/1:82,15:28:97:0.155:2	0/1:85,18:32:104:0.175:2
chr12	52867324	rs28542082	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:52,8:27:60:0.133:2	./.	./.	./.	./.	./.	0/1:95,7:32:102:0.069:2	0/1:66,5:25:71:0.070:2	0/1:56,7:32:63:0.111:2	0/1:64,5:25:69:0.072:2	0/1:57,9:32:66:0.136:2
chr12	52867339	rs2885799	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:37,4:28:41:0.098:2	./.	./.	./.	./.	./.	0/1:93,5:27:98:0.051:2	0/1:51,4:29:55:0.073:2	0/1:58,5:30:63:0.079:2	0/1:51,4:27:55:0.073:2	./.
chr12	52867341	rs201833096	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,5:28:92:0.054:2	0/1:49,4:31:53:0.075:2	0/1:57,5:29:62:0.081:2	0/1:51,4:27:55:0.073:2	./.
chr12	52867342	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:34,4:30:38:0.105:2	./.	./.	./.	./.	./.	0/1:86,5:28:91:0.055:2	0/1:49,4:32:53:0.075:2	0/1:56,5:30:61:0.082:2	0/1:52,4:28:56:0.071:2	./.
chr12	52867460	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:73,10:32:83:0.120:2	./.	./.	./.	0/1:79,16:29:95:0.168:2	0/1:107,19:32:127:0.151:2	0/1:86,10:31:96:0.104:2	0/1:82,19:33:102:0.188:2	0/1:79,7:30:86:0.081:2	0/1:77,5:33:83:0.061:2	./.
chr12	52881544	rs11540301	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,80:32:176:0.455:2	./.	0/1:116,61:31:177:0.345:2	./.	./.	./.	./.
chr12	52881632	rs62617088	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,53:32:148:0.358:2	./.	0/1:96,49:31:145:0.338:2	./.	./.	./.	./.
chr12	52882209	rs62617089	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,61:32:144:0.424:2	0/1:42,39:33:81:0.481:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	52882267	rs145246640	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,5:31:15:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	52884681	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:31:197:0.025:2	./.	./.	./.	./.
chr12	52884735	rs12578949	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:71,65:30:136:0.478:2	0/1:48,42:30:90:0.467:2	./.	./.	0/1:9,135:30:144:0.938:2	./.	0/1:103,64:30:167:0.383:2	0/1:83,81:30:164:0.494:2	./.	./.	./.
chr12	52884883	rs201526730	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:169,7:32:176:0.040:2	0/1:86,5:33:92:0.055:2	./.	./.	0/1:132,10:33:142:0.070:2	0/1:180,7:32:187:0.037:2	0/1:170,10:33:180:0.056:2	0/1:193,6:34:199:0.030:2	./.	./.	./.
chr12	52885374	rs201950477	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,9:31:118:0.076:2	./.	./.	./.	./.
chr12	52885377	rs201568563	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,9:25:119:0.076:2	./.	./.	./.	./.
chr12	52885425	rs371264380	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,86:32:174:0.494:2	./.	./.
chr12	52886478	rs376545	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:111,73:32:184:0.397:2	0/1:70,69:32:139:0.496:2	0/1:27,11:34:38:0.289:2	./.	0/1:103,92:32:195:0.472:2	./.	0/1:3,181:33:184:0.984:2	0/1:103,81:32:184:0.440:2	0/1:108,77:33:185:0.416:2	0/1:115,74:32:189:0.392:2	0/1:123,61:32:184:0.332:2
chr12	52886490	rs711317	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,170:29:172:0.988:2	0/1:0,130:30:130:1.00:2	0/1:30,11:30:41:0.268:2	./.	0/1:97,92:29:189:0.487:2	./.	0/1:123,69:29:192:0.359:2	0/1:3,182:29:185:0.984:2	0/1:101,84:30:185:0.454:2	0/1:102,82:30:184:0.446:2	0/1:120,61:29:181:0.337:2
chr12	52886641	rs681063	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:168,18:30:186:0.097:2	0/1:79,4:30:83:0.048:2	0/1:22,3:31:25:0.120:2	./.	./.	./.	0/1:166,20:30:186:0.108:2	0/1:175,18:30:193:0.093:2	0/1:172,14:30:186:0.075:2	0/1:172,19:30:191:0.099:2	0/1:164,18:30:182:0.099:2
chr12	52886684	rs200254647	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:121,12:31:134:0.090:2	0/1:59,11:32:70:0.157:2	./.	./.	0/1:134,31:30:165:0.188:2	./.	./.	0/1:121,23:31:144:0.160:2	./.	./.	./.
chr12	52886711	rs201156103	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:87,16:31:104:0.155:2	./.	0/1:17,7:30:24:0.292:2	./.	./.	./.	0/1:106,15:30:121:0.124:2	0/1:102,14:29:116:0.121:2	0/1:112,14:32:126:0.111:2	0/1:90,16:29:107:0.151:2	0/1:85,10:33:95:0.105:2
chr12	52886775	rs201927660	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,7:29:113:0.062:2	./.	0/1:80,14:28:94:0.149:2	0/1:62,6:22:69:0.088:2	0/1:64,8:28:72:0.111:2
chr12	52886911	rs17845411	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:31,45:30:76:0.592:2	0/1:17,16:32:33:0.485:2	./.	./.	0/1:8,60:32:68:0.882:2	./.	0/1:59,40:32:99:0.404:2	0/1:45,40:32:85:0.471:2	./.	./.	./.
chr12	52886964	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,4:30:97:0.041:2	./.	./.	./.	./.	./.	./.
chr12	52908789	rs201553490	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,6:19:19:0.316:2	./.	./.	./.	./.	./.	./.
chr12	52908872	rs11549949	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:9,15:31:24:0.625:2	./.	./.	./.	0/1:28,11:31:39:0.282:2	./.	0/1:25,23:31:48:0.479:2	./.	./.	./.	./.
chr12	52908917	rs11549950	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:7,18:29:25:0.720:2	./.	./.	./.	0/1:21,8:30:29:0.276:2	./.	0/1:19,23:31:42:0.548:2	./.	./.	./.	./.
chr12	52911401	rs4761924	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:13,24:29:38:0.649:2	0/1:7,16:28:23:0.696:2	./.	./.	0/1:26,18:27:44:0.409:2	./.	0/1:24,28:29:52:0.538:2	./.	./.	./.	./.
chr12	52912768	rs1132948	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:29,42:31:71:0.592:2	0/1:22,16:31:38:0.421:2	./.	./.	0/1:45,36:30:81:0.444:2	./.	0/1:54,38:30:92:0.413:2	./.	./.	./.	./.
chr12	52912774	rs199722905	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:31:109:0.037:2	0/1:148,4:31:152:0.026:2	0/1:109,7:31:116:0.060:2	0/1:86,4:29:90:0.044:2	./.
chr12	52912805	rs200333163	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,6:31:181:0.033:2	0/1:181,12:30:194:0.062:2	0/1:150,16:31:166:0.096:2	0/1:105,9:30:114:0.079:2	0/1:104,11:31:115:0.096:2
chr12	52912870	rs17852231	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:63,57:31:120:0.475:2	0/1:40,21:30:61:0.344:2	./.	./.	0/1:119,68:30:187:0.364:2	./.	0/1:91,89:30:180:0.494:2	./.	./.	./.	./.
chr12	52912906	rs641621	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,22:33:99:0.222:2	0/1:87,31:32:118:0.263:2	./.	0/1:63,32:32:95:0.337:2	0/1:74,29:33:103:0.282:2
chr12	52912909	rs641615	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,22:32:94:0.234:2	0/1:85,31:30:116:0.267:2	./.	0/1:60,32:32:92:0.348:2	0/1:72,28:32:100:0.280:2
chr12	52912933	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:42,4:30:46:0.087:2	./.	./.	./.	./.	0/1:78,8:31:86:0.093:2	0/1:86,7:27:93:0.075:2	0/1:87,4:30:91:0.044:2	0/1:69,5:28:74:0.068:2	0/1:78,6:30:84:0.071:2
chr12	52913668	rs11170164	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,48:32:119:0.403:2	0/1:53,72:31:125:0.576:2	0/1:64,53:30:117:0.453:2
chr12	52913730	rs11549951	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:29,33:31:62:0.532:2	0/1:14,20:31:34:0.588:2	./.	./.	0/1:31,45:31:76:0.592:2	0/1:3,68:30:71:0.958:2	0/1:35,27:30:62:0.435:2	./.	./.	./.	./.
chr12	52913925	rs74093478	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,9:31:24:0.375:2	./.	./.	./.	./.	./.	./.
chr12	52938320	rs2292506	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:25,21:32:46:0.457:2	0/1:17,13:32:30:0.433:2	./.	./.	0/1:22,23:32:45:0.511:2	./.	./.	./.	./.	./.	0/1:42,29:32:71:0.408:2
chr12	52938364	rs2292507	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:17,23:31:40:0.575:2	0/1:12,15:31:27:0.556:2	./.	0/1:32,24:32:56:0.429:2	./.	0/1:40,31:31:71:0.437:2	./.	0/1:0,70:31:70:1.00:2	0/1:0,54:32:54:1.00:2	0/1:33,21:32:54:0.389:2	0/1:31,20:31:51:0.392:2
chr12	52938497	rs10783518	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:17,14:32:31:0.452:2	0/1:14,9:31:23:0.391:2	./.	0/1:38,28:31:66:0.424:2	./.	0/1:36,23:31:59:0.390:2	./.	0/1:0,71:31:71:1.00:2	0/1:0,41:32:41:1.00:2	0/1:20,19:30:39:0.487:2	0/1:24,16:32:40:0.400:2
chr12	52940168	rs603193	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,36:31:67:0.545:2	./.	./.	./.	./.
chr12	52943144	rs4761930	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:43,49:31:92:0.533:2	0/1:45,33:32:78:0.423:2	./.	0/1:64,53:30:117:0.453:2	./.	0/1:67,65:31:132:0.492:2	./.	0/1:1,154:31:155:0.994:2	0/1:0,122:31:122:1.00:2	0/1:52,64:32:116:0.552:2	0/1:53,49:30:102:0.480:2
chr12	52943998	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:31:117:0.034:2
chr12	52946498	rs665470	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,6:32:9:0.667:2	0/1:70,59:31:129:0.457:2	./.	./.	0/1:5,137:32:142:0.965:2	./.	./.	./.	./.
chr12	52946543	rs665522	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:31:4:0.750:2	0/1:58,56:31:114:0.491:2	./.	./.	0/1:8,82:31:90:0.911:2	./.	./.	./.	./.
chr12	52946797	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,16:28:38:0.421:2	./.
chr12	52946825	rs74095123	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:30:5:0.600:2	./.	./.	./.	0/1:25,16:30:41:0.390:2	./.	./.	./.	./.
chr12	52962167	rs143856828	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,28:31:45:0.622:2	./.	./.
chr12	52965173	rs670741	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,6:33:6:1.00:2	0/1:46,43:33:89:0.483:2	0/1:0,85:33:85:1.00:2	0/1:1,66:32:67:0.985:2	0/1:0,80:33:80:1.00:2	0/1:45,30:32:75:0.400:2	./.	0/1:30,26:32:56:0.464:2	0/1:34,25:31:59:0.424:2
chr12	52965722	rs673363	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,119:32:120:0.992:2	0/1:0,82:32:82:1.00:2	0/1:0,8:31:8:1.00:2	0/1:111,74:32:186:0.400:2	0/1:1,124:32:125:0.992:2	0/1:0,148:31:148:1.00:2	0/1:0,121:32:121:1.00:2	0/1:116,74:32:190:0.389:2	./.	0/1:87,90:32:177:0.508:2	0/1:110,68:31:178:0.382:2
chr12	52965761	rs673449	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,133:31:134:0.993:2	0/1:0,86:32:86:1.00:2	0/1:0,14:31:14:1.00:2	0/1:103,77:31:180:0.428:2	0/1:0,150:31:150:1.00:2	0/1:0,171:31:171:1.00:2	0/1:0,153:32:153:1.00:2	0/1:111,71:31:182:0.390:2	./.	0/1:101,75:32:176:0.426:2	0/1:101,51:31:153:0.336:2
chr12	52965782	rs673476	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,106:32:108:0.991:2	0/1:0,68:32:68:1.00:2	0/1:0,14:33:14:1.00:2	0/1:94,73:33:167:0.437:2	0/1:0,122:32:123:1.00:2	0/1:0,152:33:152:1.00:2	0/1:0,128:33:128:1.00:2	0/1:89,53:32:142:0.373:2	./.	0/1:95,55:32:150:0.367:2	0/1:72,45:32:117:0.385:2
chr12	52966249	rs73320318	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:30:13:0.462:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	52966390	rs11170176	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,78:32:143:0.545:2	./.	./.	./.	0/1:61,51:32:112:0.455:2	./.
chr12	52966428	rs11170177	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,55:33:106:0.524:2	./.	./.	./.	./.	./.
chr12	52967117	rs73107581	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,41:31:99:0.414:2	./.	./.	./.	./.	./.	./.
chr12	52967264	rs142401177	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,19:32:36:0.528:2	./.	./.	./.
chr12	52967436	rs11836189	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:16,17:32:33:0.515:2	0/1:12,7:32:19:0.368:2	0/1:0,12:30:12:1.00:2	./.	0/1:29,26:30:56:0.473:2	./.	0/1:23,33:31:56:0.589:2	./.	./.	./.	./.
chr12	52981442	rs11170183	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,50:31:101:0.495:2	0/1:73,65:31:138:0.471:2	0/1:54,40:31:94:0.426:2	./.	0/1:60,52:32:112:0.464:2	./.	./.	./.
chr12	52981627	rs7310138	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,12:30:32:0.375:2	./.	0/1:3,25:31:28:0.893:2	./.	./.	./.	./.
chr12	52984620	rs12818575	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,32:32:84:0.381:2	0/1:23,15:32:38:0.395:2	0/1:44,45:32:89:0.506:2	./.	0/1:62,32:32:94:0.340:2	./.	./.	./.
chr12	52985293	rs12824366	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,71:30:176:0.403:2	0/1:93,92:29:185:0.497:2	0/1:0,159:29:159:1.00:2	./.	0/1:89,68:29:157:0.433:2	./.	0/1:84,68:29:152:0.447:2	./.
chr12	52986187	rs12833456	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,26:33:78:0.333:2	0/1:21,23:32:44:0.523:2	0/1:0,51:32:51:1.00:2	./.	0/1:48,40:32:88:0.455:2	./.	0/1:33,22:32:55:0.400:2	./.
chr12	52992812	rs11170187	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,48:33:108:0.444:2	0/1:36,59:31:95:0.621:2	0/1:0,82:32:82:1.00:2	./.	0/1:49,50:32:99:0.505:2	./.	0/1:69,57:32:126:0.452:2	./.
chr12	52994955	rs61747192	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,39:31:62:0.629:2	./.	./.	./.	0/1:24,19:31:43:0.442:2	./.
chr12	53004603	rs7302968	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,31:30:31:1.00:2	./.	./.	./.	./.
chr12	53010111	rs581690	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:125,6:32:131:0.046:2	./.	./.	./.	0/1:119,7:29:126:0.056:2	./.	./.	./.	0/1:150,4:33:154:0.026:2	./.	0/1:136,4:33:140:0.029:2
chr12	53010135	rs590743	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,6:28:92:0.065:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:31:118:0.034:2
chr12	53011955	rs61736102	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:59,43:32:102:0.422:2	0/1:23,27:32:50:0.540:2	0/1:8,7:30:15:0.467:2	./.	./.	0/1:81,62:31:143:0.434:2	./.	./.	0/1:76,60:32:136:0.441:2	0/1:53,64:32:117:0.547:2	0/1:56,43:31:99:0.434:2
chr12	53012128	rs35417182	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,13:30:28:0.464:2	0/1:10,9:31:19:0.474:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	53044267	rs638043	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,109:28:110:0.991:2	./.	./.	./.	0/1:55,60:29:115:0.522:2	./.	0/1:0,80:29:81:1.00:2	./.
chr12	53044336	rs202095349	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,12:15:65:0.185:2	0/1:80,12:18:92:0.130:2	0/1:78,13:14:92:0.143:2	0/1:70,9:19:79:0.114:2	./.	0/1:52,9:20:61:0.148:2
chr12	53045615	rs75253159	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:23,5:28:28:0.179:2	0/1:21,4:29:25:0.160:2	./.	./.	0/1:32,15:28:47:0.319:2	./.	./.	./.	0/1:21,10:30:32:0.323:2	./.	0/1:15,7:25:22:0.318:2
chr12	53045626	rs2634041	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:15,19:29:34:0.559:2	0/1:15,13:29:28:0.464:2	./.	./.	0/1:21,27:28:48:0.563:2	./.	./.	./.	0/1:2,33:29:35:0.943:2	./.	0/1:0,27:28:27:1.00:2
chr12	53045777	rs11835758	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,5:29:12:0.455:2	./.	./.	./.	0/1:13,7:28:20:0.350:2	0/1:11,10:27:21:0.476:2	0/1:0,21:28:21:1.00:2	0/1:13,13:28:26:0.500:2	./.	./.	./.
chr12	53069014	rs14024	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,76:32:76:1.00:2	0/1:30,22:33:52:0.423:2	./.	./.	0/1:48,22:33:70:0.314:2	0/1:0,57:33:57:1.00:2	0/1:36,26:33:62:0.419:2	0/1:44,31:32:75:0.413:2
chr12	53069235	rs11170232	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:33:6:0.500:2	./.	./.	./.	./.	0/1:3,3:25:6:0.500:2	./.	0/1:6,4:31:10:0.400:2	./.	./.	./.
chr12	53069243	rs77846840	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.
chr12	53070121	rs698170	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,63:33:96:0.656:2	0/1:34,33:32:67:0.493:2	0/1:0,11:32:11:1.00:2	0/1:1,100:33:101:0.990:2	0/1:0,92:32:92:1.00:2	0/1:54,71:32:125:0.568:2	0/1:0,123:33:123:1.00:2	0/1:0,127:32:127:1.00:2	0/1:0,125:34:125:1.00:2	0/1:0,89:32:89:1.00:2	0/1:61,53:32:114:0.465:2
chr12	53070145	rs936958	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:41,61:31:102:0.598:2	0/1:33,31:31:64:0.484:2	0/1:6,13:32:19:0.684:2	./.	0/1:47,56:31:103:0.544:2	0/1:62,70:31:132:0.530:2	0/1:0,146:32:146:1.00:2	0/1:77,64:31:141:0.454:2	./.	./.	./.
chr12	53070174	rs17678945	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,42:31:118:0.356:2	0/1:39,31:31:70:0.443:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,72:31:138:0.522:2
chr12	53074058	rs828367	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,11:29:26:0.423:2	./.
chr12	53085089	rs636127	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:28:5:1.00:2	0/1:0,3:24:3:1.00:2	0/1:0,5:28:5:1.00:2	./.	./.	./.	./.	./.
chr12	53086626	rs828109	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,92:31:172:0.535:2	./.
chr12	53086645	rs3782489	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:91,63:32:154:0.409:2	0/1:54,61:32:115:0.530:2	0/1:11,19:31:30:0.633:2	./.	0/1:95,93:31:188:0.495:2	0/1:89,64:31:153:0.418:2	./.	0/1:94,92:31:186:0.495:2	./.	./.	./.
chr12	53088484	rs10783528	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,38:32:63:0.603:2	0/1:12,12:32:24:0.500:2	0/1:8,3:32:11:0.273:2	0/1:1,77:31:78:0.987:2	0/1:73,89:32:162:0.549:2	./.	./.	0/1:53,48:32:101:0.475:2	0/1:0,76:33:76:1.00:2	0/1:15,36:32:51:0.706:2	0/1:0,50:31:50:1.00:2
chr12	53088525	rs585664	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,24:32:69:0.348:2	./.
chr12	53090190	rs7138818	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,17:31:29:0.586:2	0/1:7,8:31:15:0.533:2	./.	./.	0/1:42,20:30:62:0.323:2	0/1:35,18:31:53:0.340:2	0/1:0,42:31:42:1.00:2	0/1:37,31:31:68:0.456:2	./.	./.	./.
chr12	53090223	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:33:47:0.085:2	./.	./.
chr12	53091566	rs1567759	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,44:32:85:0.518:2	0/1:27,26:32:53:0.491:2	0/1:9,8:33:17:0.471:2	0/1:129,4:32:133:0.030:2	0/1:70,40:32:110:0.364:2	0/1:69,53:32:122:0.434:2	0/1:2,123:32:125:0.984:2	0/1:82,58:32:140:0.414:2	./.	./.	./.
chr12	53091676	rs668313	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,21:33:46:0.457:2	./.
chr12	53096913	rs1625862	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,11:32:11:1.00:2	0/1:0,9:32:9:1.00:2	./.	0/1:0,11:32:11:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,17:31:17:1.00:2
chr12	53162528	rs2280480	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,51:30:125:0.408:2	./.	0/1:71,71:31:143:0.500:2	0/1:105,55:31:160:0.344:2	./.	./.	./.	./.
chr12	53162638	rs2280479	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,25:31:48:0.521:2	0/1:20,12:30:32:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,11:32:33:0.333:2
chr12	53162749	rs140093642	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,26:31:43:0.605:2	0/1:8,8:32:16:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,15:31:30:0.500:2
chr12	53162773	rs1464423	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,18:28:36:0.514:2	0/1:7,12:29:19:0.632:2	0/1:0,7:27:7:1.00:2	0/1:2,35:29:37:0.946:2	0/1:0,56:27:56:1.00:2	0/1:0,44:28:44:1.00:2	0/1:0,35:28:35:1.00:2	0/1:1,48:27:49:0.980:2	0/1:0,41:29:41:1.00:2	0/1:0,22:27:22:1.00:2	0/1:0,29:27:30:1.00:2
chr12	53163309	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,25:32:58:0.431:2	./.	./.	./.	./.	./.
chr12	53164848	rs7313832	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:29:4:1.00:2	0/1:55,44:30:99:0.444:2	0/1:0,85:30:86:1.00:2	0/1:64,45:31:109:0.413:2	0/1:66,66:30:132:0.500:2	0/1:2,114:31:117:0.983:2	0/1:0,99:32:99:1.00:2	0/1:0,90:31:90:1.00:2	0/1:45,45:32:91:0.500:2
chr12	53165940	rs6580904	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,30:31:30:1.00:2	0/1:1,180:31:182:0.994:2	0/1:1,166:31:167:0.994:2	0/1:1,174:31:176:0.994:2	0/1:2,183:31:186:0.989:2	0/1:0,179:31:179:1.00:2	0/1:4,176:32:180:0.978:2	0/1:1,169:31:170:0.994:2	0/1:92,78:32:170:0.459:2
chr12	53165949	rs12296548	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,87:32:150:0.580:2	0/1:40,35:31:75:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	53166603	rs61730600	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,16:30:28:0.571:2	0/1:11,13:29:24:0.542:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,16:29:41:0.390:2
chr12	53167395	rs11170271	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,26:31:52:0.500:2	./.	0/1:32,28:31:60:0.467:2	0/1:19,28:31:47:0.596:2	./.	./.	./.	./.
chr12	53170853	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,5:27:62:0.081:2	./.	./.	./.	./.	./.	./.	./.
chr12	53171001	rs11170272	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,11:30:33:0.333:2
chr12	53184683	rs17119107	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,16:29:33:0.485:2	0/1:7,20:31:27:0.741:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,13:30:26:0.500:2
chr12	53185492	rs61929765	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,84:31:174:0.483:2	0/1:2,132:31:134:0.985:2	./.	./.	./.	./.
chr12	53185493	rs376783753	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,82:31:178:0.461:2	./.	./.	./.	./.	./.	./.	./.
chr12	53185574	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:128:0.031:2	./.	./.	./.	./.
chr12	53186088	rs3887954	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,49:33:88:0.557:2	0/1:26,23:32:49:0.469:2	0/1:0,9:32:9:1.00:2	0/1:0,96:33:97:1.00:2	0/1:7,153:32:160:0.956:2	0/1:60,80:32:140:0.571:2	./.	0/1:0,148:32:148:1.00:2	0/1:56,68:34:125:0.548:2	0/1:0,76:33:76:1.00:2	0/1:37,46:32:83:0.554:2
chr12	53186122	rs4432093	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,46:32:83:0.554:2	0/1:18,25:32:43:0.581:2	0/1:0,6:31:6:1.00:2	0/1:1,79:31:80:0.988:2	0/1:3,138:31:141:0.979:2	0/1:49,60:30:109:0.550:2	./.	0/1:0,118:31:118:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,57:32:57:1.00:2	0/1:24,32:31:56:0.571:2
chr12	53186153	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,4:30:97:0.041:2	./.	./.	./.	./.	./.	./.
chr12	53187927	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:32:120:0.033:2	./.
chr12	53189446	rs117364830	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:29:41:0.098:2	./.	./.
chr12	53189449	rs147386788	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:28:44:0.093:2	./.	./.
chr12	53189577	rs62617086	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	53189696	rs28721426	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,2:35:5:0.400:2	./.	./.	./.	./.	./.	./.	0/1:10,8:33:18:0.444:2	0/1:7,10:32:17:0.588:2
chr12	53189791	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	53201484	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:104,4:33:108:0.037:2	./.	./.	./.	./.	./.	./.
chr12	53202183	rs7956809	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,37:30:70:0.529:2	./.	./.	0/1:20,35:29:55:0.636:2	0/1:39,42:31:81:0.519:2
chr12	53204614	rs2307027	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:32:87:1.00:2	0/1:0,54:32:54:1.00:2	0/1:11,6:32:17:0.353:2	0/1:0,98:31:98:1.00:2	0/1:0,82:31:82:1.00:2	0/1:78,56:32:134:0.418:2	0/1:60,45:32:105:0.429:2	0/1:1,106:32:107:0.991:2	0/1:0,138:33:138:1.00:2	0/1:1,90:32:91:0.989:2	0/1:1,136:32:137:0.993:2
chr12	53205757	rs7959052	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,73:29:166:0.440:2	0/1:116,59:28:175:0.337:2
chr12	53207528	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,28:32:68:0.412:2	./.	./.	./.	./.	./.
chr12	53207628	rs2638525	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,10:30:22:0.455:2	0/1:19,8:31:27:0.296:2
chr12	53216100	rs377207695	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,19:29:30:0.633:2	./.	./.	./.	./.	./.
chr12	53216184	rs4415849	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:30:34:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,2:29:2:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,38:29:38:1.00:2
chr12	53216989	rs17688627	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,47:31:93:0.511:2	0/1:0,105:30:105:1.00:2	./.	./.	./.	./.	0/1:38,37:30:75:0.493:2	./.
chr12	53217701	rs10876354	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,46:31:46:1.00:2	0/1:1,26:31:27:0.963:2	./.	0/1:40,24:31:64:0.375:2	0/1:1,64:30:65:0.985:2	0/1:30,27:30:57:0.474:2	./.	./.	./.	0/1:35,23:31:58:0.397:2	0/1:0,52:30:52:1.00:2
chr12	53223865	rs17688672	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,88:30:164:0.537:2	./.	./.
chr12	53227798	rs150909244	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,9:31:20:0.450:2	./.	./.	./.	./.	./.
chr12	53227803	rs2638497	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,16:30:16:1.00:2	0/1:0,8:28:8:1.00:2	./.	0/1:9,13:30:22:0.591:2	0/1:0,22:28:22:1.00:2	0/1:10,10:28:20:0.500:2	./.	./.	./.	0/1:1,10:29:11:0.909:2	0/1:0,23:29:23:1.00:2
chr12	53238347	rs61764062	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:31:8:0.500:2	./.	./.	./.	./.	0/1:42,35:31:77:0.455:2	./.	./.	./.
chr12	53240584	rs2682342	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:30:5:0.600:2	./.	./.	./.	./.	0/1:57,29:30:86:0.337:2	./.	./.	./.
chr12	53242415	rs17119683	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:32:10:0.600:2	./.	./.	./.	./.	0/1:94,87:31:181:0.481:2	./.	./.	./.
chr12	53242440	rs2013335	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:57,36:31:93:0.387:2	0/1:18,16:29:34:0.471:2	./.	0/1:2,129:30:131:0.985:2	0/1:2,132:29:134:0.985:2	0/1:70,80:30:150:0.533:2	./.	./.	0/1:80,62:31:142:0.437:2	0/1:50,61:30:111:0.550:2	0/1:0,118:29:118:1.00:2
chr12	53242579	rs2253798	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:28:5:0.600:2	./.	./.	./.	./.	0/1:15,5:33:20:0.250:2	./.	./.	./.
chr12	53292618	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:32:55:0.073:2	./.	./.	./.	./.	./.
chr12	53292644	rs62636489	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:31:49:0.082:2	./.	./.	./.	./.	./.
chr12	53292676	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,4:31:32:0.125:2	./.	./.	./.	./.	./.
chr12	53294381	rs8608	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:32:16:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,8:32:8:1.00:2	0/1:23,16:33:39:0.410:2	0/1:18,13:32:31:0.419:2	0/1:20,22:33:42:0.524:2	0/1:31,13:33:44:0.295:2	./.	0/1:2,25:34:27:0.926:2	0/1:24,11:33:35:0.314:2	0/1:23,5:31:28:0.179:2
chr12	53298675	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,3:32:22:0.136:2	./.	./.	./.	./.
chr12	53298699	rs201807576	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,3:32:24:0.125:2	./.	./.	./.	./.
chr12	53412665	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,5:31:87:0.057:2	0/1:68,4:32:72:0.056:2	./.
chr12	53412696	rs201771326	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,5:28:49:0.102:2	./.	./.	./.	0/1:72,4:32:76:0.053:2	./.	./.
chr12	53416288	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:33:102:0.039:2	./.	./.	./.	./.
chr12	53427621	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,5:32:188:0.027:2
chr12	53431276	.	C	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,5:28:78:0.064:2	./.	./.	0/1:84,10:30:94:0.106:2	./.	0/1:61,7:31:68:0.103:2	./.
chr12	53431298	rs146008363	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,94:32:146:0.644:2	./.	./.	./.
chr12	53431308	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,15:29:118:0.128:2	./.	./.	./.	./.	./.
chr12	53431353	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,7:33:197:0.036:2	./.	./.
chr12	53431395	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	53433089	rs1548204	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:31:77:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,115:32:115:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,118:32:118:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,107:32:107:1.00:2
chr12	53433486	rs8916	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:33:26:1.00:2	0/1:0,15:32:15:1.00:2	0/1:1,3:32:4:0.750:2	0/1:2,21:32:23:0.913:2	0/1:0,21:32:21:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,20:33:20:1.00:2	0/1:3,27:32:30:0.900:2	0/1:0,28:32:28:1.00:2	0/1:0,36:33:36:1.00:2	0/1:0,56:32:56:1.00:2
chr12	53442956	rs12369033	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:30:29:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,3:29:3:1.00:2	0/1:1,34:30:35:0.971:2	0/1:15,12:30:27:0.444:2	0/1:0,37:30:37:1.00:2	0/1:16,22:30:38:0.579:2	0/1:1,38:29:39:0.974:2	0/1:12,22:29:34:0.647:2	0/1:16,16:30:32:0.500:2	0/1:0,38:29:38:1.00:2
chr12	53442979	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,4:33:37:0.108:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	53449597	rs2293062	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,17:28:25:0.680:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	53451849	rs11170389	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,46:31:94:0.489:2	./.	./.	./.	./.
chr12	53452532	rs142054380	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,30:31:72:0.417:2	./.	./.	./.
chr12	53453456	rs34044566	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,25:28:42:0.595:2	./.	./.	./.	./.
chr12	53454504	rs142155111	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,15:31:55:0.273:2	./.	./.	./.	./.	./.
chr12	53457618	rs12816417	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,18:32:47:0.383:2	./.	./.	./.	./.
chr12	53468971	rs142430651	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,19:28:59:0.322:2	0/1:10,9:28:19:0.474:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	53497445	rs202025289	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,16:31:33:0.485:2	./.	./.	./.
chr12	53497927	rs17123210	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:33:12:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	53509339	rs3219199	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.
chr12	53509340	rs3219200	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.
chr12	53509933	rs2272296	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:30:16:0.563:2	./.	0/1:45,58:31:103:0.563:2	./.	0/1:85,58:31:143:0.406:2	./.	./.	./.	./.
chr12	53514612	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:31:151:0.026:2	./.	./.
chr12	53516949	rs140314253	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,71:32:189:0.376:2	./.	./.	./.	./.	./.
chr12	53563865	rs11170453	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,19:32:41:0.463:2	./.	./.	0/1:21,26:32:47:0.553:2	./.	./.	./.
chr12	53565710	rs147020312	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,20:34:56:0.357:2	./.	./.
chr12	53581376	rs3101059	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,23:31:42:0.548:2	0/1:13,8:32:21:0.381:2	./.	./.	./.	0/1:17,19:30:36:0.528:2	./.	./.	./.	./.	./.
chr12	53586198	rs2230397	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,19:29:44:0.442:2
chr12	53589930	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:31:62:0.065:2	./.	./.	./.	./.	./.
chr12	53605545	rs2229774	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,21:31:30:0.700:2	./.	0/1:24,6:32:30:0.200:2	./.	./.	./.	0/1:32,13:31:45:0.289:2
chr12	53647177	.	T	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,8:20:82:0.098:2	0/1:97,22:15:119:0.185:2	0/1:84,12:23:96:0.125:2	0/1:97,16:17:113:0.142:2	0/1:90,24:17:114:0.211:2	0/1:63,8:17:71:0.113:2	0/1:49,14:20:63:0.222:2	0/1:51,9:26:60:0.150:2
chr12	53647373	rs10876422	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,17:33:32:0.531:2	0/1:5,12:32:17:0.706:2	0/1:3,3:34:6:0.500:2	0/1:16,18:32:34:0.529:2	0/1:19,18:33:37:0.486:2	./.	0/1:0,34:33:34:1.00:2	0/1:32,18:33:51:0.360:2	0/1:0,22:33:22:1.00:2	0/1:17,19:33:36:0.528:2	0/1:21,17:33:38:0.447:2
chr12	53662624	rs6580942	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,18:31:18:1.00:2	0/1:0,16:32:16:1.00:2	./.	0/1:13,8:30:21:0.381:2	0/1:0,28:31:28:1.00:2	./.	0/1:0,21:30:21:1.00:2	0/1:16,11:28:27:0.407:2	0/1:0,22:31:22:1.00:2	0/1:15,4:29:19:0.211:2	0/1:0,34:31:34:1.00:2
chr12	53668689	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,10:20:92:0.109:2	./.	./.	0/1:74,7:22:82:0.086:2	0/1:81,9:22:90:0.100:2	./.	./.	./.
chr12	53670545	rs1318648	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,22:30:24:0.917:2	0/1:0,14:30:14:1.00:2	0/1:2,4:31:6:0.667:2	0/1:23,26:31:49:0.531:2	0/1:24,25:30:49:0.510:2	./.	0/1:0,54:31:54:1.00:2	0/1:20,34:30:54:0.630:2	0/1:1,45:31:46:0.978:2	0/1:27,17:31:44:0.386:2	0/1:19,22:31:41:0.537:2
chr12	53680011	rs111320105	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,12:35:41:0.293:2	./.	./.
chr12	53681883	rs1110719	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:31:43:1.00:2	0/1:0,35:31:35:1.00:2	0/1:5,6:31:11:0.545:2	0/1:0,48:31:48:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,67:30:67:1.00:2	0/1:1,42:31:43:0.977:2	0/1:0,41:30:41:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,56:31:56:1.00:2	0/1:22,17:31:39:0.436:2
chr12	53682326	rs1110720	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:31:19:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,3:32:3:1.00:2	0/1:11,8:30:19:0.421:2	0/1:19,11:30:30:0.367:2	./.	0/1:0,18:31:18:1.00:2	0/1:13,12:29:25:0.480:2	0/1:2,33:32:35:0.943:2	0/1:10,4:31:14:0.286:2	0/1:16,6:31:22:0.273:2
chr12	53682457	rs56358776	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,48:32:108:0.444:2	0/1:53,41:31:94:0.436:2	0/1:1,110:31:111:0.991:2	./.	0/1:55,61:32:116:0.526:2	./.	0/1:49,46:31:95:0.484:2	./.
chr12	53682986	rs3214023	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,75:32:75:1.00:2	0/1:0,55:32:55:1.00:2	./.	0/1:50,34:31:84:0.405:2	0/1:1,63:31:64:0.984:2	0/1:1,80:31:81:0.988:2	./.	0/1:59,40:31:99:0.404:2	./.	0/1:35,43:31:78:0.551:2	./.
chr12	53683222	rs112624761	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,13:31:33:0.394:2
chr12	53686703	rs1056685	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:31:55:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,76:31:76:1.00:2	0/1:0,119:31:119:1.00:2	0/1:0,84:30:84:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,99:31:99:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,48:30:48:1.00:2
chr12	53693528	rs143723459	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,10:33:17:0.588:2	./.	./.
chr12	53693532	rs1534284	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:27:20:1.00:2	0/1:0,20:28:20:1.00:2	0/1:0,5:27:5:1.00:2	0/1:0,32:28:32:1.00:2	0/1:0,23:27:23:1.00:2	0/1:0,31:27:31:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,17:28:17:1.00:2	0/1:0,16:28:16:1.00:2	0/1:0,9:28:9:1.00:2	0/1:0,9:26:9:1.00:2
chr12	53693533	rs1534283	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:31:20:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,9:31:9:1.00:2
chr12	53700848	rs1534282	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:31:58:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,88:31:88:1.00:2	0/1:4,92:31:96:0.958:2	0/1:0,100:31:100:1.00:2	0/1:0,76:31:76:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,63:31:63:1.00:2
chr12	53700860	rs711316	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:30:52:1.00:2	0/1:0,29:28:29:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,71:28:71:1.00:2	0/1:0,81:30:81:1.00:2	0/1:5,86:29:91:0.945:2	0/1:0,96:29:96:1.00:2	0/1:0,68:29:68:1.00:2	0/1:0,56:30:56:1.00:2	0/1:0,57:29:58:1.00:2
chr12	53701317	rs34451260	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,21:32:51:0.412:2
chr12	53701399	rs35282133	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,9:28:17:0.529:2
chr12	53703021	rs1546808	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,28:31:28:1.00:2	0/1:0,17:32:17:1.00:2	./.	0/1:1,57:31:58:0.983:2	0/1:1,40:31:41:0.976:2	0/1:0,63:30:63:1.00:2	0/1:3,46:31:49:0.939:2	0/1:3,82:31:85:0.965:2	0/1:0,65:32:65:1.00:2	0/1:0,41:31:41:1.00:2	0/1:34,29:30:63:0.460:2
chr12	53708910	rs11540353	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,129:32:131:0.985:2	./.	0/1:100,98:32:198:0.495:2	./.	./.	./.
chr12	53722098	rs7138938	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:28:88:1.00:2	0/1:0,45:27:45:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,126:29:126:1.00:2	0/1:0,120:28:120:1.00:2	0/1:0,118:28:119:1.00:2	0/1:0,107:28:107:1.00:2	0/1:0,109:27:109:1.00:2	0/1:0,110:29:110:1.00:2	0/1:0,103:27:103:1.00:2	0/1:1,92:28:93:0.989:2
chr12	53722128	rs7139272	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:30:90:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,146:30:146:1.00:2	0/1:0,193:31:193:1.00:2	0/1:0,146:31:146:1.00:2	0/1:0,188:31:188:1.00:2	0/1:0,160:31:160:1.00:2	0/1:0,142:31:142:1.00:2	0/1:0,138:32:138:1.00:2	0/1:64,56:31:120:0.467:2
chr12	53722362	rs113295055	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,23:27:32:0.719:2
chr12	53774029	.	A	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,10:20:59:0.169:2	0/1:48,6:20:54:0.111:2	./.	0/1:48,7:24:55:0.127:2	./.	0/1:31,10:18:41:0.244:2	./.	./.
chr12	53777171	rs3741651	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:42,52:32:94:0.553:2	0/1:21,20:33:41:0.488:2	0/1:5,12:33:17:0.706:2	./.	0/1:91,72:32:163:0.442:2	./.	./.	./.	./.	./.	./.
chr12	53823307	rs784890	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:31:9:0.556:2	./.	./.	./.	./.	./.	./.	./.	0/1:71,45:32:116:0.388:2
chr12	53854854	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:32:162:0.025:2
chr12	53900640	rs35822762	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,5:26:18:0.278:2
chr12	53928327	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:33:69:0.058:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	53946385	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:33:131:0.031:2	./.
chr12	53946410	rs33921258	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:39,26:32:65:0.400:2	0/1:38,18:32:56:0.321:2	0/1:5,3:31:8:0.375:2	./.	0/1:55,37:31:92:0.402:2	./.	./.	./.	./.	./.	./.
chr12	54106967	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,7:30:64:0.109:2	./.	./.	./.	./.	./.	./.	./.
chr12	54109659	rs3741659	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,118:32:118:1.00:2	./.	./.	./.	./.	0/1:46,42:31:88:0.477:2	./.	./.
chr12	54109703	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:33:132:0.030:2	./.	./.	./.	./.
chr12	54109733	rs3741658	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,33:30:58:0.569:2	0/1:18,16:29:34:0.471:2	0/1:8,4:27:12:0.333:2	0/1:0,96:31:96:1.00:2	0/1:52,44:30:96:0.458:2	./.	./.	./.	0/1:43,39:30:82:0.476:2	./.	0/1:47,44:28:91:0.484:2
chr12	54115301	rs148746301	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:34:198:0.020:2	./.	./.
chr12	54117513	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:32:56:0.071:2	./.	./.	./.	./.	./.
chr12	54367061	rs4759315	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:29:26:1.00:2	0/1:0,16:28:16:1.00:2	0/1:0,3:29:3:1.00:2	0/1:0,32:28:32:1.00:2	0/1:0,41:28:41:1.00:2	0/1:0,33:28:33:1.00:2	0/1:0,28:27:28:1.00:2	0/1:0,36:27:36:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,28:28:28:1.00:2	0/1:0,29:27:29:1.00:2
chr12	54367690	rs12427129	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	0/1:0,6:30:6:1.00:2	./.	./.	./.	./.	./.	./.
chr12	54379295	rs33927265	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,38:32:75:0.507:2	./.	./.	./.
chr12	54379670	rs4564384	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:24,28:31:52:0.538:2	0/1:4,17:29:21:0.810:2	./.	./.	0/1:21,13:28:34:0.382:2	./.	./.	./.	0/1:36,31:31:67:0.463:2	./.	./.
chr12	54385599	rs11614913	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:23,19:32:42:0.452:2	0/1:25,10:32:35:0.286:2	./.	0/1:41,34:31:75:0.453:2	./.	./.	./.	0/1:0,94:31:94:1.00:2	0/1:27,28:30:55:0.509:2	./.	./.
chr12	54394497	rs2241820	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,4:33:4:1.00:2	./.	./.	0/1:0,2:30:2:1.00:2	./.	0/1:0,15:30:15:1.00:2	0/1:0,3:25:3:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,5:31:5:1.00:2	./.	./.
chr12	54448106	rs75256744	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,29:29:52:0.558:2	0/1:44,31:28:75:0.413:2	0/1:55,33:28:88:0.375:2	./.	./.	./.	./.	./.
chr12	54448643	rs17854635	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,21:32:46:0.457:2
chr12	54674584	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:163,4:31:167:0.024:2	./.	./.	./.	./.	./.	./.
chr12	54677644	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,6:32:25:0.240:2	./.	./.	./.
chr12	54741781	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:32:172:0.023:2
chr12	54744254	rs116774775	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,30:32:71:0.429:2
chr12	54764088	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,61:32:103:0.592:2	./.	./.	./.	./.
chr12	54767812	rs2887875	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,38:30:71:0.535:2	./.	./.	./.	./.	0/1:23,28:31:51:0.549:2	./.	./.
chr12	54796757	rs7306692	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,26:31:65:0.400:2	0/1:63,31:32:94:0.330:2	0/1:59,40:31:99:0.404:2	0/1:57,31:33:88:0.352:2	0/1:37,25:32:62:0.403:2	0/1:0,84:32:85:1.00:2
chr12	54799450	rs1249378	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:28:74:1.00:2	0/1:0,26:29:26:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,100:29:100:1.00:2	0/1:0,112:29:112:1.00:2	0/1:0,93:30:93:1.00:2	0/1:0,130:29:130:1.00:2	0/1:0,112:28:112:1.00:2	0/1:0,83:29:83:1.00:2	0/1:0,88:29:88:1.00:2	0/1:0,83:28:83:1.00:2
chr12	54803278	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:32:55:0.073:2	./.
chr12	54905815	rs2458409	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,77:32:148:0.524:2	0/1:49,50:32:99:0.505:2	0/1:0,32:30:32:1.00:2	0/1:2,159:32:162:0.988:2	0/1:83,83:32:166:0.500:2	0/1:0,175:32:175:1.00:2	0/1:0,173:32:173:1.00:2	0/1:0,159:32:159:1.00:2	0/1:1,167:33:168:0.994:2	0/1:2,140:32:143:0.986:2	0/1:0,175:32:175:1.00:2
chr12	54911426	rs2270581	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,30:31:63:0.476:2	0/1:17,23:32:40:0.575:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,35:32:81:0.432:2
chr12	54911696	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:33:184:0.022:2	./.	./.
chr12	54925072	rs35861129	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,23:31:38:0.605:2	./.	./.
chr12	54967429	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:31:168:0.024:2	./.	./.	./.	./.
chr12	54969870	rs148673155	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,26:31:46:0.565:2	./.	./.	./.	./.	./.
chr12	54970454	rs1249950	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:17,16:33:33:0.485:2	0/1:12,10:32:22:0.455:2	0/1:0,2:34:2:1.00:2	./.	./.	0/1:0,52:33:52:1.00:2	0/1:42,44:32:86:0.512:2	./.	./.	0/1:0,46:32:46:1.00:2	0/1:0,46:32:46:1.00:2
chr12	54974803	rs8407	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:81,59:32:140:0.421:2	0/1:38,28:32:66:0.424:2	0/1:15,5:30:20:0.250:2	./.	./.	0/1:67,66:31:133:0.496:2	./.	./.	./.	0/1:5,132:31:137:0.964:2	0/1:76,69:32:145:0.476:2
chr12	54975837	rs1249958	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,36:32:37:1.00:2	0/1:0,13:31:13:1.00:2	./.	0/1:0,34:33:34:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,45:32:45:1.00:2
chr12	55248357	rs1048371	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,21:32:21:1.00:2	0/1:53,40:31:93:0.430:2	0/1:0,78:32:78:1.00:2	0/1:67,51:31:118:0.432:2	0/1:45,35:32:80:0.438:2	0/1:76,57:32:133:0.429:2	0/1:52,53:31:105:0.505:2	0/1:51,43:32:94:0.457:2	0/1:48,56:32:104:0.538:2
chr12	55250612	rs1349910	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:28:40:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,12:29:12:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,59:29:59:1.00:2	0/1:0,62:28:62:1.00:2	0/1:0,82:29:82:1.00:2	0/1:0,60:28:60:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,49:29:49:1.00:2	0/1:0,46:30:46:1.00:2
chr12	55355033	rs997173	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,41:31:87:0.471:2	0/1:32,36:32:68:0.529:2	./.	0/1:73,79:31:152:0.520:2	0/1:39,32:33:71:0.451:2	./.	./.
chr12	55356517	rs79969168	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,92:31:180:0.511:2	./.	./.	./.
chr12	55356823	rs151024475	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,52:29:96:0.542:2	./.	./.	./.	./.	./.	./.
chr12	55368188	rs17554194	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,21:33:43:0.488:2	0/1:18,28:33:46:0.609:2	./.
chr12	55368245	rs4758993	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,75:31:77:0.974:2	0/1:45,58:31:104:0.563:2	./.	0/1:54,36:31:90:0.400:2	0/1:1,72:33:73:0.986:2	0/1:0,81:31:81:1.00:2	./.
chr12	55421250	rs2656804	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,3:32:13:0.231:2	0/1:52,26:30:78:0.333:2	0/1:34,38:31:72:0.528:2	./.	0/1:51,51:32:102:0.500:2	./.	./.	./.	./.
chr12	55421299	rs2243885	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,3:30:10:0.300:2	0/1:52,36:32:88:0.409:2	0/1:36,32:31:68:0.471:2	./.	0/1:45,42:32:87:0.483:2	./.	./.	./.	./.
chr12	55421332	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,54:33:109:0.495:2	./.
chr12	55422233	rs79710610	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,31:34:52:0.596:2	./.	./.
chr12	55423744	rs77755589	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,10:33:15:0.667:2	./.	./.
chr12	55523685	rs12303066	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,10:31:20:0.500:2	./.	./.	0/1:102,64:30:166:0.386:2	0/1:5,141:31:146:0.966:2	0/1:73,96:31:169:0.568:2	./.	./.	0/1:97,93:32:190:0.489:2
chr12	55523795	rs118155337	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,58:30:108:0.537:2
chr12	55523860	rs7305779	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:29:8:0.500:2	./.	./.	0/1:19,20:32:39:0.513:2	0/1:5,32:31:37:0.865:2	0/1:17,24:31:41:0.585:2	./.	./.	0/1:16,29:31:45:0.644:2
chr12	55524008	rs139097998	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,92:31:170:0.541:2	./.	./.
chr12	55524172	rs7306491	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,15:30:28:0.536:2	./.	./.	0/1:108,46:30:155:0.299:2	0/1:0,112:31:112:1.00:2	0/1:85,55:30:141:0.393:2	./.	./.	0/1:73,83:30:157:0.532:2
chr12	55524314	rs7137261	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:32:12:0.583:2	./.	./.	0/1:52,45:32:97:0.464:2	0/1:2,80:32:82:0.976:2	0/1:54,60:32:114:0.526:2	./.	./.	0/1:47,58:32:105:0.552:2
chr12	55615229	rs151030005	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,84:30:191:0.440:2
chr12	55641075	rs7301705	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,12:31:34:0.353:2	0/1:3,39:32:43:0.929:2	0/1:14,17:33:31:0.548:2	./.	./.	0/1:0,48:32:48:1.00:2
chr12	55641255	rs4522268	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,11:33:16:0.688:2	./.	./.	0/1:66,51:32:117:0.436:2	0/1:4,84:33:88:0.955:2	0/1:79,48:33:127:0.378:2	./.	./.	0/1:0,118:33:118:1.00:2
chr12	55641295	rs4388990	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:33:12:0.667:2	./.	./.	0/1:68,51:32:119:0.429:2	0/1:4,69:32:74:0.945:2	0/1:55,42:33:97:0.433:2	./.	./.	0/1:0,123:33:123:1.00:2
chr12	55641328	rs6581025	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,7:31:10:0.700:2	./.	./.	0/1:61,41:31:102:0.402:2	0/1:4,67:31:71:0.944:2	0/1:48,40:31:88:0.455:2	./.	./.	0/1:1,106:31:107:0.991:2
chr12	55641585	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,4:34:93:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr12	55641811	rs79165229	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,26:31:45:0.578:2	./.	./.	./.	./.
chr12	55641920	rs73322883	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,13:31:28:0.464:2	./.	./.	./.	./.
chr12	55688267	rs7308594	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:31:11:1.00:2	./.	0/1:0,61:32:61:1.00:2	0/1:2,70:31:72:0.972:2	0/1:0,65:31:65:1.00:2	0/1:0,117:32:118:1.00:2	./.	0/1:0,83:32:83:1.00:2	0/1:0,93:32:93:1.00:2
chr12	55688895	rs78183586	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,25:32:58:0.431:2	./.	./.	./.	./.
chr12	55714772	rs7132431	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,92:31:159:0.582:2	0/1:35,60:31:95:0.632:2	0/1:0,16:30:16:1.00:2	0/1:0,166:30:166:1.00:2	0/1:0,149:30:149:1.00:2	0/1:1,156:30:157:0.994:2	0/1:0,148:30:148:1.00:2	0/1:3,188:30:191:0.984:2	0/1:96,98:32:194:0.505:2	0/1:1,128:31:129:0.992:2	0/1:111,82:31:193:0.425:2
chr12	55714876	rs7132347	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:61,93:32:154:0.604:2	0/1:67,66:33:133:0.496:2	0/1:0,26:32:26:1.00:2	./.	0/1:1,150:32:152:0.993:2	0/1:1,135:32:136:0.993:2	0/1:0,132:32:132:1.00:2	0/1:1,155:33:156:0.994:2	0/1:90,85:33:175:0.486:2	0/1:1,156:32:158:0.994:2	0/1:113,78:33:191:0.408:2
chr12	55715048	rs7132600	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:97,70:31:167:0.419:2	0/1:61,46:31:107:0.430:2	./.	0/1:4,138:31:142:0.972:2	./.	./.	0/1:74,53:31:127:0.417:2	./.	0/1:115,77:32:192:0.401:2	./.	./.
chr12	55715119	rs7132916	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,91:31:192:0.474:2	0/1:82,49:31:131:0.374:2	0/1:0,26:30:26:1.00:2	0/1:0,182:30:182:1.00:2	0/1:1,190:30:191:0.995:2	0/1:0,185:30:185:1.00:2	0/1:0,188:30:188:1.00:2	0/1:1,185:31:187:0.995:2	0/1:107,83:32:190:0.437:2	0/1:0,189:30:189:1.00:2	0/1:98,92:31:191:0.484:2
chr12	55725690	rs4318060	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:18,15:31:33:0.455:2	0/1:15,4:31:19:0.211:2	./.	0/1:0,34:30:34:1.00:2	./.	./.	0/1:26,15:30:41:0.366:2	./.	0/1:19,12:31:31:0.387:2	./.	./.
chr12	55794773	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,50:32:117:0.427:2	./.	./.
chr12	55794976	rs7971073	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:92,95:33:188:0.508:2	0/1:48,63:33:111:0.568:2	0/1:0,22:33:22:1.00:2	./.	0/1:0,95:32:95:1.00:2	0/1:0,128:32:128:1.00:2	0/1:49,75:33:125:0.605:2	0/1:2,148:33:150:0.987:2	0/1:93,94:33:187:0.503:2	./.	0/1:0,183:33:183:1.00:2
chr12	55820121	rs6581046	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,13:32:13:1.00:2	./.	0/1:0,75:32:75:1.00:2	0/1:0,87:31:87:1.00:2	0/1:60,47:32:107:0.439:2	0/1:1,112:31:113:0.991:2	0/1:144,5:32:149:0.034:2	0/1:2,64:31:66:0.970:2	0/1:74,38:31:112:0.339:2
chr12	55846623	rs11171467	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:115,71:33:186:0.382:2	0/1:85,87:32:172:0.506:2	./.	0/1:5,182:33:187:0.973:2	./.	./.	0/1:108,73:33:181:0.403:2	./.	0/1:118,73:33:191:0.382:2	./.	./.
chr12	55863224	rs60683621	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,9:31:13:0.692:2	./.	0/1:1,85:32:86:0.988:2	./.	./.	./.	./.	0/1:58,52:33:111:0.473:2	./.
chr12	55863381	rs10747756	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,29:33:80:0.363:2	0/1:22,26:31:48:0.542:2	0/1:0,13:33:13:1.00:2	0/1:0,100:33:100:1.00:2	0/1:0,61:32:61:1.00:2	0/1:1,100:32:101:0.990:2	0/1:0,84:32:84:1.00:2	0/1:2,98:32:100:0.980:2	0/1:57,58:33:115:0.504:2	0/1:0,60:32:60:1.00:2	0/1:56,26:32:82:0.317:2
chr12	55863398	rs12313730	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:31:12:0.417:2	./.	./.	./.	0/1:57,33:30:90:0.367:2	0/1:59,48:31:107:0.449:2	./.	./.	0/1:52,27:32:79:0.342:2
chr12	55886294	rs7133698	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,13:30:13:1.00:2	./.	0/1:1,68:29:70:0.986:2	0/1:2,103:28:105:0.981:2	0/1:49,45:28:94:0.479:2	0/1:0,90:30:92:1.00:2	./.	0/1:0,88:29:88:1.00:2	0/1:62,37:29:103:0.374:2
chr12	55886489	rs7304753	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:30:14:0.571:2	./.	0/1:5,62:30:67:0.925:2	./.	./.	./.	./.	0/1:44,45:31:89:0.506:2	./.
chr12	55887087	rs12579181	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,12:31:12:1.00:2	./.	./.	./.	./.	0/1:5,3:32:8:0.375:2	./.
chr12	55945119	rs7313899	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,100:32:100:1.00:2	0/1:1,68:32:69:0.986:2	0/1:0,7:32:7:1.00:2	0/1:0,120:32:120:1.00:2	0/1:0,90:31:90:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,121:32:121:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,88:33:88:1.00:2	0/1:0,119:32:119:1.00:2
chr12	56030938	rs10876838	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,64:32:65:0.985:2	0/1:1,55:32:56:0.982:2	./.	0/1:43,48:31:91:0.527:2	0/1:1,109:32:110:0.991:2	./.	0/1:54,56:32:110:0.509:2	0/1:54,44:32:98:0.449:2	0/1:1,76:33:77:0.987:2	0/1:0,69:33:69:1.00:2	0/1:24,27:33:51:0.529:2
chr12	56031273	rs7970885	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:31:43:1.00:2	0/1:1,25:32:26:0.962:2	0/1:3,5:32:8:0.625:2	0/1:38,37:31:76:0.493:2	0/1:0,77:31:77:1.00:2	./.	0/1:49,47:32:96:0.490:2	0/1:58,39:31:97:0.402:2	0/1:1,54:32:55:0.982:2	0/1:0,42:32:42:1.00:2	0/1:28,23:32:51:0.451:2
chr12	56031567	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,4:28:25:0.160:2
chr12	56031611	rs11171631	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:25:11:0.364:2	./.	./.	./.	./.
chr12	56075599	rs199581976	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,23:32:56:0.411:2	./.	./.
chr12	56077603	rs149095022	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,88:28:193:0.456:2	./.	./.	./.	./.	./.
chr12	56077740	rs11615467	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,32:31:59:0.542:2	./.
chr12	56082025	rs17117883	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,81:29:151:0.536:2	./.
chr12	56086993	rs144983062	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,35:31:81:0.432:2	./.	./.
chr12	56089357	rs1800974	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,47:30:96:0.495:2	0/1:24,32:30:56:0.571:2	./.	./.	./.	0/1:82,66:31:148:0.446:2	./.	0/1:108,75:31:183:0.410:2	0/1:0,127:31:127:1.00:2	./.	./.
chr12	56092542	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:29:95:0.042:2	./.	./.
chr12	56092668	rs74867235	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,12:31:30:0.400:2	./.	./.	./.	./.	./.	./.	0/1:15,8:30:23:0.348:2
chr12	56092682	rs3847675	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,6:26:11:0.545:2	./.	./.	./.	0/1:7,14:29:21:0.667:2
chr12	56094122	rs375762415	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,14:32:27:0.519:2	0/1:10,8:31:18:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	56094743	rs76770808	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,50:30:98:0.510:2	./.
chr12	56115585	rs3138142	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:16,9:32:25:0.360:2	0/1:4,4:32:8:0.500:2	./.	0/1:15,15:31:30:0.500:2	./.	./.	./.	./.	./.	./.	0/1:10,7:30:17:0.412:2
chr12	56151291	rs7068	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,14:33:14:1.00:2	0/1:4,4:33:8:0.500:2	./.	0/1:7,7:32:14:0.500:2	0/1:23,5:34:28:0.179:2	0/1:2,4:31:6:0.667:2	./.
chr12	56182846	rs3741504	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,24:34:67:0.358:2	0/1:23,21:33:44:0.477:2	0/1:3,3:33:6:0.500:2	0/1:48,40:33:88:0.455:2	./.	./.	0/1:2,60:33:62:0.968:2	./.	0/1:68,41:33:109:0.376:2	0/1:30,27:33:57:0.474:2	0/1:54,39:33:93:0.419:2
chr12	56215807	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:32:110:0.036:2	./.
chr12	56221287	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:32:59:0.069:2	./.	./.
chr12	56221651	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,31:31:91:0.341:2	./.	./.	./.	./.	./.
chr12	56233313	rs1056784	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,60:31:160:0.377:2	./.	0/1:53,64:33:117:0.547:2	./.	./.
chr12	56236531	rs7294345	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,9:31:9:1.00:2	0/1:0,6:28:6:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,29:29:29:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,14:29:14:1.00:2
chr12	56295734	rs7302270	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,100:33:100:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,110:32:110:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,96:32:96:1.00:2	0/1:1,123:33:125:0.992:2	0/1:0,143:33:143:1.00:2	0/1:0,117:33:117:1.00:2	0/1:0,133:32:133:1.00:2	0/1:0,141:33:141:1.00:2
chr12	56320843	.	G	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,13:29:29:0.448:2	./.	./.	0/1:32,13:28:45:0.289:2	0/1:30,13:23:43:0.302:2	0/1:35,12:24:47:0.255:2	0/1:44,15:24:59:0.254:2	0/1:50,20:27:70:0.286:2	0/1:31,18:24:49:0.367:2	0/1:21,7:27:28:0.250:2	0/1:21,13:29:34:0.382:2
chr12	56320848	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,5:22:44:0.114:2	./.	./.	0/1:49,9:17:58:0.155:2	./.	0/1:39,13:15:52:0.250:2	./.	0/1:26,8:19:34:0.235:2
chr12	56335107	rs1136082	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,12:31:32:0.375:2	0/1:10,4:32:14:0.286:2	0/1:0,3:32:3:1.00:2	0/1:11,13:32:24:0.542:2	0/1:0,19:30:19:1.00:2	0/1:0,13:31:13:1.00:2	0/1:12,6:31:18:0.333:2	0/1:0,33:31:33:1.00:2	0/1:26,18:31:44:0.409:2	0/1:20,9:32:29:0.310:2	0/1:0,17:32:17:1.00:2
chr12	56345808	rs80334579	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,81:31:82:0.988:2	./.	./.	./.	0/1:38,47:32:85:0.553:2	0/1:31,27:32:58:0.466:2	./.
chr12	56346203	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:34:121:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	56346656	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,4:31:17:0.235:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	56348028	rs1052206	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,11:28:46:0.239:2	0/1:16,18:31:34:0.529:2	0/1:0,11:28:11:1.00:2	0/1:38,28:29:66:0.424:2	0/1:0,34:29:34:1.00:2	0/1:0,52:29:52:1.00:2	0/1:53,33:29:86:0.384:2	0/1:0,67:29:67:1.00:2	0/1:33,30:31:63:0.476:2	0/1:33,22:30:55:0.400:2	0/1:0,45:30:45:1.00:2
chr12	56351346	rs1052165	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,21:32:52:0.404:2	0/1:16,17:33:33:0.515:2	./.	0/1:27,23:31:50:0.460:2	0/1:0,65:31:65:1.00:2	0/1:0,63:31:63:1.00:2	./.	0/1:37,26:32:63:0.413:2	0/1:29,35:33:64:0.547:2	0/1:28,26:32:54:0.481:2	0/1:0,46:33:46:1.00:2
chr12	56355204	rs188708664	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,11:28:15:0.733:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	56360876	rs2069398	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:9,7:33:16:0.438:2	0/1:18,6:32:24:0.250:2	./.	./.	./.	./.	./.	0/1:26,20:30:48:0.435:2	./.	./.	./.
chr12	56363319	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:85,4:31:89:0.045:2	./.	./.	./.	./.	./.	./.
chr12	56397776	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:33:168:0.024:2	./.	./.	./.	./.
chr12	56398295	rs200938021	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:47,8:22:55:0.145:2	./.	./.	./.	./.	./.	0/1:68,12:15:81:0.150:2	0/1:61,10:20:71:0.141:2	0/1:64,9:20:73:0.123:2	0/1:39,10:12:49:0.204:2	./.
chr12	56398454	rs773115	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,38:29:88:0.432:2	0/1:29,21:27:50:0.420:2	0/1:0,7:30:7:1.00:2	0/1:0,87:28:87:1.00:2	0/1:0,77:28:77:1.00:2	0/1:0,82:28:82:1.00:2	0/1:0,80:29:80:1.00:2	0/1:0,96:29:96:1.00:2	0/1:0,87:28:87:1.00:2	0/1:0,60:28:60:1.00:2	0/1:0,102:28:102:1.00:2
chr12	56428585	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:32:77:0.052:2
chr12	56435920	rs17118262	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,24:33:47:0.511:2	0/1:9,15:33:24:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	56435929	rs1131017	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:34:7:0.571:2	0/1:1,50:33:51:0.980:2	0/1:0,56:32:56:1.00:2	0/1:1,74:33:75:0.987:2	0/1:34,31:32:65:0.477:2	0/1:43,26:31:69:0.377:2	0/1:37,18:33:55:0.327:2	0/1:1,56:32:58:0.982:2	0/1:0,68:32:68:1.00:2
chr12	56435948	rs181174349	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,32:28:61:0.525:2	./.	./.	./.	./.
chr12	56478979	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:33:105:0.038:2	./.	./.
chr12	56481855	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,4:32:73:0.055:2	./.	./.	./.	./.	./.	./.	./.
chr12	56487201	rs2229046	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,28:33:65:0.431:2	0/1:17,20:33:37:0.541:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	56490332	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:35:103:0.039:2
chr12	56494991	rs2271189	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,5:31:6:0.833:2	0/1:32,32:31:64:0.500:2	./.	./.	0/1:58,31:31:89:0.348:2	0/1:43,34:31:77:0.442:2	0/1:19,21:31:40:0.525:2	./.	./.
chr12	56494998	rs773123	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,30:31:30:1.00:2	0/1:0,20:31:20:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	56501016	rs78028795	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,6:29:191:0.031:2	./.	./.	./.
chr12	56501328	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:34:69:0.058:2	./.	./.	./.
chr12	56504774	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,4:32:51:0.080:2	./.	./.	./.	./.	./.	./.
chr12	56505011	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:32:149:0.027:2	./.	./.
chr12	56528118	rs2292237	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:29:16:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	56531154	rs2271192	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,56:29:56:1.00:2	0/1:0,37:29:37:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	56532009	rs35075600	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,34:31:60:0.567:2	0/1:16,23:31:39:0.590:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	56554019	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:34:127:0.031:2	./.	./.
chr12	56555218	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,4:31:28:0.143:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	56558430	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,16:9:58:0.276:2	./.
chr12	56572604	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:33:40:0.100:2	./.	./.
chr12	56628999	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:34:43:0.093:2	./.	./.
chr12	56630764	rs17118409	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,23:31:42:0.548:2	./.	./.	./.	0/1:35,35:32:70:0.500:2	./.	./.	./.
chr12	56631012	rs139208152	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,9:30:39:0.231:2	./.	./.	./.	./.
chr12	56636975	rs59626664	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,8:32:18:0.444:2	./.	./.	./.	0/1:14,16:32:30:0.533:2	./.	./.	./.
chr12	56647911	rs808919	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,51:29:52:0.981:2	0/1:0,26:30:26:1.00:2	0/1:0,14:29:14:1.00:2	0/1:42,35:30:77:0.455:2	0/1:0,90:30:91:1.00:2	0/1:1,79:29:80:0.988:2	0/1:0,78:29:80:1.00:2	0/1:50,42:29:92:0.457:2	./.	0/1:1,57:29:58:0.983:2	0/1:0,62:29:62:1.00:2
chr12	56649601	rs1274490	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:32:70:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,9:33:9:1.00:2	0/1:53,41:32:94:0.436:2	0/1:0,104:31:104:1.00:2	0/1:0,96:31:96:1.00:2	0/1:0,104:32:105:1.00:2	0/1:48,52:32:100:0.520:2	0/1:0,101:32:101:1.00:2	0/1:1,60:31:61:0.984:2	0/1:0,66:32:66:1.00:2
chr12	56669799	rs61738833	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,6:28:22:0.273:2	./.	./.	./.	./.	0/1:95,103:32:198:0.520:2	./.	./.	./.
chr12	56676279	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,11:32:198:0.056:2	0/1:195,4:33:199:0.020:2	./.	./.	0/1:189,5:30:194:0.026:2
chr12	56676763	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,3:33:35:0.086:2	./.	./.	./.	./.	./.	./.
chr12	56679751	rs1802236	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,39:32:104:0.375:2	./.	./.	./.	0/1:89,83:32:172:0.483:2	./.	./.	./.
chr12	56711371	rs3809129	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,29:32:61:0.475:2	./.	./.	./.
chr12	56717368	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:32:74:0.054:2	./.	./.	./.
chr12	56718422	rs11171803	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,40:29:105:0.381:2	./.	./.	./.	0/1:64,60:28:124:0.484:2	./.	./.	./.
chr12	56721222	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,4:32:188:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr12	56721223	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:179,4:32:183:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr12	56722060	rs1918496	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:33:87:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,153:32:153:1.00:2	0/1:0,152:32:152:1.00:2	0/1:0,124:33:124:1.00:2	0/1:1,193:32:194:0.995:2	0/1:0,157:33:157:1.00:2	0/1:0,177:34:177:1.00:2	0/1:0,108:33:108:1.00:2	0/1:0,113:33:113:1.00:2
chr12	56733531	rs11171806	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,39:33:73:0.534:2	./.	./.	./.	0/1:49,25:32:74:0.338:2	./.	./.	./.
chr12	56733577	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,4:32:56:0.073:2	./.	./.	./.	./.	./.	./.	./.
chr12	56733851	rs199760416	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,20:30:37:0.541:2	./.
chr12	56740291	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:130,4:33:134:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr12	56740682	rs2066807	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,58:33:147:0.395:2	./.	./.	./.	./.	./.	./.	./.
chr12	56743367	rs2020854	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,44:32:153:0.288:2	./.	./.	./.	./.	./.	./.	./.
chr12	56814653	rs2291739	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,33:33:71:0.465:2	0/1:15,15:32:30:0.500:2	0/1:0,15:33:15:1.00:2	0/1:36,42:31:78:0.538:2	./.	./.	0/1:32,20:33:52:0.385:2	0/1:35,29:31:64:0.453:2	0/1:15,34:33:49:0.694:2	0/1:15,12:32:27:0.444:2	./.
chr12	56814656	rs61376834	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,30:31:65:0.469:2	./.	./.	./.
chr12	56815922	rs774047	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,36:33:64:0.563:2	0/1:31,12:32:43:0.279:2	./.	0/1:54,52:33:106:0.491:2	0/1:0,89:32:89:1.00:2	0/1:1,111:32:112:0.991:2	0/1:58,50:33:108:0.463:2	0/1:52,62:32:114:0.544:2	0/1:35,71:33:106:0.670:2	0/1:26,29:32:55:0.527:2	0/1:0,97:32:97:1.00:2
chr12	56822378	rs774027	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:50,27:32:77:0.351:2	0/1:29,19:32:48:0.396:2	./.	0/1:43,50:32:93:0.538:2	0/1:0,128:32:128:1.00:2	0/1:0,112:31:112:1.00:2	0/1:68,87:32:155:0.561:2	0/1:86,90:32:176:0.511:2	0/1:56,41:33:97:0.423:2	0/1:40,33:32:73:0.452:2	0/1:2,71:32:73:0.973:2
chr12	56825311	rs774033	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,30:28:62:0.484:2	0/1:19,10:30:29:0.345:2	./.	0/1:40,36:28:76:0.474:2	0/1:0,102:27:102:1.00:2	0/1:0,57:28:57:1.00:2	0/1:45,43:28:88:0.489:2	0/1:68,44:27:112:0.393:2	0/1:40,32:29:72:0.444:2	0/1:25,21:29:46:0.457:2	0/1:0,43:29:43:1.00:2
chr12	56827694	rs2279665	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,25:33:61:0.410:2	0/1:21,22:33:43:0.512:2	0/1:0,12:33:12:1.00:2	0/1:66,30:32:96:0.313:2	./.	./.	0/1:86,56:33:142:0.394:2	0/1:65,38:32:103:0.369:2	0/1:53,47:34:100:0.470:2	0/1:47,43:33:90:0.478:2	./.
chr12	56848155	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,21:30:61:0.344:2	./.	./.	./.	./.	./.	./.	./.
chr12	56862886	rs2657881	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:29:41:1.00:2	0/1:0,21:28:21:1.00:2	0/1:0,3:29:3:1.00:2	0/1:1,35:30:36:0.972:2	0/1:0,22:31:22:1.00:2	0/1:0,30:28:30:1.00:2	0/1:0,21:29:21:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,30:29:30:1.00:2
chr12	56863058	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:31:146:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	56865338	rs2657879	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,55:33:108:0.509:2	./.	./.	./.	./.	0/1:47,45:33:92:0.489:2	./.	0/1:63,56:33:119:0.471:2
chr12	56868810	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,5:26:70:0.071:2	./.	./.	./.	./.	./.
chr12	56956213	rs3759091	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,179:33:182:0.984:2	0/1:2,162:32:164:0.988:2	0/1:21,25:33:46:0.543:2	0/1:118,76:33:194:0.392:2	0/1:5,180:32:185:0.973:2	0/1:9,179:32:188:0.952:2	0/1:11,175:33:186:0.941:2	0/1:9,180:33:189:0.952:2	0/1:109,83:34:192:0.432:2	0/1:6,183:33:189:0.968:2	0/1:111,82:33:193:0.425:2
chr12	56963750	rs144911920	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:32:94:0.043:2	./.	./.	./.	./.
chr12	56975249	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:30:56:0.071:2	./.	./.	./.	./.
chr12	56982085	rs147777758	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:34:42:0.095:2	./.	./.	./.	./.
chr12	56995332	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,3:34:23:0.130:2	./.	./.
chr12	56995856	rs149132897	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,34:32:84:0.405:2	./.	./.
chr12	57003964	rs2230580	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:29:11:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	57005671	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:32:94:0.043:2	./.	./.	./.	./.	./.
chr12	57006925	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:33:143:0.028:2	./.	./.
chr12	57058609	rs17541818	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,42:33:105:0.400:2	./.	./.	./.	./.	./.	./.	./.
chr12	57065569	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,6:33:192:0.031:2	./.	./.	./.	./.
chr12	57066815	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:32:150:0.027:2	./.	./.	./.	./.	./.
chr12	57066820	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:30:141:0.028:2	./.	./.	./.	./.	./.
chr12	57106609	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:187,4:33:191:0.021:2	./.	./.	./.	./.	./.	./.	0/1:189,6:32:196:0.031:2	0/1:183,6:33:190:0.032:2	./.	./.
chr12	57106660	rs4788	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,73:31:145:0.503:2	0/1:46,42:31:88:0.477:2	0/1:10,5:31:15:0.333:2	0/1:77,86:30:163:0.528:2	./.	0/1:90,79:30:169:0.467:2	0/1:0,105:30:105:1.00:2	0/1:88,74:30:162:0.457:2	0/1:86,83:31:169:0.491:2	0/1:0,142:31:142:1.00:2	0/1:75,102:31:177:0.576:2
chr12	57108156	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:32:111:0.036:2	./.	./.	./.
chr12	57108203	rs4902	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,52:30:99:0.525:2	0/1:23,31:29:54:0.574:2	./.	./.	./.	0/1:47,52:30:99:0.525:2	0/1:4,62:31:66:0.939:2	0/1:61,42:30:103:0.408:2	0/1:48,66:31:114:0.579:2	0/1:44,50:30:94:0.532:2	0/1:52,50:30:102:0.490:2
chr12	57109792	rs2958149	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:37,31:29:68:0.456:2	0/1:25,25:29:50:0.500:2	./.	0/1:56,32:29:88:0.364:2	0/1:109,6:27:115:0.052:2	0/1:57,60:29:117:0.513:2	0/1:0,75:29:75:1.00:2	0/1:69,45:29:114:0.395:2	0/1:56,27:28:83:0.325:2	0/1:0,67:30:67:1.00:2	0/1:41,67:28:108:0.620:2
chr12	57109931	rs2926747	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:48,28:29:77:0.368:2	0/1:28,29:29:57:0.509:2	0/1:6,3:30:9:0.333:2	./.	./.	0/1:54,36:27:90:0.400:2	0/1:0,81:28:82:1.00:2	0/1:71,47:28:119:0.398:2	0/1:54,44:28:100:0.449:2	0/1:34,30:28:66:0.469:2	0/1:44,49:29:97:0.527:2
chr12	57110442	rs76076193	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,11:27:25:0.440:2	./.
chr12	57111587	rs200070725	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.
chr12	57111588	rs201249962	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.
chr12	57111948	rs58668145	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.
chr12	57111949	rs61032015	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:35:2:1.00:2	./.	./.	./.	./.
chr12	57112637	rs11171951	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,15:31:18:0.833:2	0/1:2,6:32:8:0.750:2	./.	./.	./.	0/1:6,7:31:13:0.538:2	0/1:0,8:30:8:1.00:2	0/1:5,3:31:8:0.375:2	0/1:7,6:32:13:0.462:2	0/1:4,3:32:7:0.429:2	0/1:7,9:28:16:0.563:2
chr12	57113709	rs200816397	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,5:22:37:0.135:2	./.
chr12	57114100	rs2926743	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,33:33:52:0.635:2	0/1:15,20:33:35:0.571:2	0/1:3,3:33:6:0.500:2	0/1:24,25:32:49:0.510:2	0/1:38,3:32:41:0.073:2	0/1:32,35:33:67:0.522:2	0/1:1,39:32:40:0.975:2	0/1:29,19:33:48:0.396:2	0/1:49,42:34:91:0.462:2	0/1:0,43:33:43:1.00:2	0/1:27,36:34:63:0.571:2
chr12	57114113	rs149200196	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,22:31:52:0.423:2	./.	./.	./.
chr12	57114307	rs2958127	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,20:31:45:0.444:2	0/1:17,7:32:24:0.292:2	./.	./.	./.	0/1:32,23:32:55:0.418:2	0/1:4,23:32:27:0.852:2	0/1:34,24:32:58:0.414:2	0/1:22,31:33:53:0.585:2	0/1:18,19:31:37:0.514:2	0/1:42,20:33:62:0.323:2
chr12	57114869	rs17118953	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,20:33:38:0.526:2	./.
chr12	57132303	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:35:75:0.053:2	./.	./.
chr12	57133140	rs1131514	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:28,20:33:49:0.417:2	0/1:26,16:31:42:0.381:2	0/1:7,7:33:14:0.500:2	./.	./.	0/1:44,21:32:65:0.323:2	0/1:0,46:33:46:1.00:2	0/1:35,44:33:79:0.557:2	0/1:29,24:33:53:0.453:2	0/1:26,19:33:45:0.422:2	0/1:30,28:33:58:0.483:2
chr12	57137828	rs1026565	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,12:32:40:0.300:2	0/1:10,11:32:21:0.524:2	./.	./.	./.	0/1:8,14:31:22:0.636:2	0/1:1,4:31:5:0.800:2	0/1:6,20:31:26:0.769:2	0/1:21,19:33:40:0.475:2	0/1:10,11:32:21:0.524:2	0/1:21,23:32:44:0.523:2
chr12	57146069	rs2277339	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,16:31:44:0.364:2	./.	./.	./.
chr12	57167656	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,5:24:56:0.089:2	./.	./.	./.	./.
chr12	57167657	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:30:58:0.069:2	./.	./.	./.	./.
chr12	57167706	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:29:95:0.042:2	./.	./.	./.	./.
chr12	57327904	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,4:31:70:0.057:2	./.	./.	./.	./.	./.	./.	./.
chr12	57390038	rs35493121	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,25:29:53:0.472:2	./.	./.	./.	./.
chr12	57397247	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:30:93:0.043:2	./.	./.	./.
chr12	57397690	rs141443423	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,74:33:164:0.451:2	./.	./.
chr12	57397876	rs117805856	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,89:29:186:0.478:2	./.	./.	./.	./.
chr12	57398294	rs748894	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,41:30:87:0.471:2	0/1:66,50:30:117:0.431:2
chr12	57398672	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.	./.	./.	./.	./.
chr12	57406444	rs733629	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,26:33:60:0.433:2	./.	./.	./.	./.
chr12	57422934	rs17119344	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,79:30:185:0.427:2	./.	./.	./.	./.
chr12	57457018	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:30:198:0.025:2	./.	./.
chr12	57485019	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:33:110:0.036:2	./.
chr12	57485455	rs2233271	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,5:32:8:0.625:2	./.	./.
chr12	57522754	.	A	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:136,25:10:161:0.155:2	./.	0/1:85,18:11:104:0.175:2	0/1:140,21:10:161:0.130:2	./.	0/1:88,20:14:108:0.185:2	./.
chr12	57532311	rs146149784	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:32:77:0.052:2	./.
chr12	57535266	rs1799986	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,30:31:67:0.448:2	0/1:71,33:32:104:0.317:2	./.	./.	./.	./.	0/1:31,39:32:70:0.557:2	./.
chr12	57548466	rs1800137	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,38:31:74:0.514:2	./.
chr12	57567762	rs1800194	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:35,32:31:67:0.478:2	0/1:20,8:32:28:0.286:2	./.	./.	0/1:74,37:31:111:0.333:2	./.	./.	./.	0/1:54,44:32:98:0.449:2	0/1:47,43:32:90:0.478:2	0/1:29,31:32:61:0.517:2
chr12	57569478	rs12814239	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,49:31:101:0.485:2	./.	./.	./.	./.
chr12	57574183	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:32:84:0.048:2	./.	./.	./.	./.
chr12	57577625	rs200133275	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:34:118:0.034:2
chr12	57578673	rs34577247	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,50:30:120:0.417:2
chr12	57585144	rs1800139	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,63:33:120:0.525:2	0/1:38,31:32:69:0.449:2	0/1:0,29:32:29:1.00:2	0/1:0,181:32:181:1.00:2	0/1:107,74:32:181:0.409:2	0/1:0,163:32:163:1.00:2	0/1:1,175:32:176:0.994:2	0/1:4,173:33:177:0.977:2	0/1:86,88:33:174:0.506:2	0/1:103,77:33:180:0.428:2	0/1:80,87:33:167:0.521:2
chr12	57588433	rs1800141	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,6:32:16:0.375:2	./.
chr12	57589659	rs1800154	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:14,12:33:26:0.462:2	0/1:16,12:30:28:0.429:2	./.	./.	0/1:24,30:31:54:0.556:2	./.	./.	./.	0/1:28,15:31:43:0.349:2	0/1:11,16:31:27:0.593:2	0/1:23,20:32:43:0.465:2
chr12	57589784	rs7397167	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,13:32:13:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,18:30:18:1.00:2
chr12	57590797	rs1800156	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:30,31:30:61:0.508:2	0/1:23,15:32:38:0.395:2	./.	./.	0/1:41,53:30:94:0.564:2	./.	./.	./.	0/1:37,30:31:67:0.448:2	0/1:21,34:29:55:0.618:2	0/1:14,21:31:35:0.600:2
chr12	57590869	rs7308698	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:32:85:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,135:32:135:1.00:2	0/1:0,182:32:182:1.00:2	0/1:0,129:33:129:1.00:2	0/1:0,155:33:155:1.00:2	0/1:1,157:33:158:0.994:2	0/1:0,128:33:128:1.00:2	0/1:1,93:32:94:0.989:2	0/1:0,58:31:58:1.00:2
chr12	57593101	rs1140648	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,24:32:57:0.421:2	0/1:16,7:32:23:0.304:2	0/1:0,5:32:5:1.00:2	0/1:0,77:32:77:1.00:2	0/1:83,69:32:153:0.454:2	0/1:0,78:32:78:1.00:2	0/1:4,163:32:167:0.976:2	0/1:0,109:32:109:1.00:2	0/1:38,15:34:53:0.283:2	0/1:27,37:33:64:0.578:2	0/1:23,34:32:57:0.596:2
chr12	57600281	rs1800160	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,44:31:98:0.449:2	./.	./.	./.	./.	./.
chr12	57619209	rs7979061	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,2:32:2:1.00:2	./.	./.	0/1:0,3:25:3:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr12	57619362	rs10783816	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:34,17:31:51:0.333:2	0/1:14,9:31:23:0.391:2	./.	./.	0/1:36,46:30:82:0.561:2	0/1:27,56:31:83:0.675:2	./.	./.	0/1:34,36:32:70:0.514:2	0/1:18,27:32:45:0.600:2	0/1:23,29:32:52:0.558:2
chr12	57619446	rs139684967	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,27:32:82:0.329:2	./.	./.
chr12	57626513	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,6:30:32:0.188:2
chr12	57627074	rs2229717	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,68:30:133:0.511:2	./.	./.	./.	0/1:51,41:31:92:0.446:2	./.
chr12	57637593	rs3204635	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,15:31:39:0.385:2	0/1:22,21:31:43:0.488:2	0/1:28,35:31:63:0.556:2	0/1:17,12:29:29:0.414:2	./.	./.	./.	./.
chr12	57649840	rs4075325	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,57:31:144:0.396:2	0/1:38,50:31:88:0.568:2	0/1:9,14:32:23:0.609:2	0/1:84,69:32:153:0.451:2	0/1:101,54:31:155:0.348:2	0/1:99,72:31:171:0.421:2	0/1:103,68:32:171:0.398:2	./.	0/1:99,87:32:186:0.468:2	./.	./.
chr12	57663561	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:31:104:0.038:2	./.	./.	./.	./.
chr12	57691865	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:33:82:0.049:2	./.	./.	./.	./.
chr12	57691913	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,4:33:91:0.044:2	./.	./.	./.	./.	./.	./.	./.
chr12	57696975	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,4:33:25:0.160:2	./.	./.	./.	./.	./.	./.
chr12	57843413	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:29:49:0.082:2	./.	./.	./.	./.
chr12	57843711	rs2229357	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,26:33:40:0.650:2	0/1:17,10:32:27:0.370:2	./.	./.	./.	./.	./.	./.	0/1:31,15:32:46:0.326:2	./.	./.
chr12	57850118	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,6:22:87:0.069:2
chr12	57859431	rs2228225	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:33:62:1.00:2	0/1:0,32:32:32:1.00:2	0/1:8,9:31:17:0.529:2	0/1:48,40:32:88:0.455:2	./.	./.	0/1:61,42:31:103:0.408:2	0/1:5,109:32:114:0.956:2	0/1:0,75:32:75:1.00:2	0/1:34,51:32:85:0.600:2	0/1:0,87:32:87:1.00:2
chr12	57860092	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:31:158:0.025:2	./.	./.	./.
chr12	57861785	rs61734545	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,38:29:71:0.535:2	./.	./.	./.	./.	./.	./.
chr12	57865321	rs2228224	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,17:29:18:0.944:2	0/1:0,12:31:12:1.00:2	0/1:2,4:28:6:0.667:2	0/1:4,11:28:15:0.733:2	./.	./.	0/1:5,8:29:13:0.615:2	0/1:1,16:29:17:0.941:2	0/1:0,11:30:11:1.00:2	0/1:11,7:23:18:0.389:2	0/1:0,24:30:24:1.00:2
chr12	57865821	rs2228226	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,38:33:38:1.00:2	0/1:0,25:32:25:1.00:2	./.	0/1:30,20:31:50:0.400:2	./.	./.	0/1:17,28:32:45:0.622:2	0/1:0,66:32:66:1.00:2	0/1:1,48:33:49:0.980:2	0/1:18,21:32:39:0.538:2	0/1:1,42:32:43:0.977:2
chr12	57869582	rs2277315	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,23:33:23:1.00:2	0/1:0,19:31:19:1.00:2	./.	0/1:18,8:30:26:0.308:2	./.	./.	0/1:13,12:32:25:0.480:2	0/1:0,27:31:27:1.00:2	0/1:0,19:33:20:1.00:2	0/1:18,9:31:27:0.333:2	0/1:1,7:33:8:0.875:2
chr12	57870155	rs11544238	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,15:30:15:1.00:2	0/1:0,19:31:19:1.00:2	./.	0/1:10,10:30:20:0.500:2	./.	./.	0/1:15,8:30:23:0.348:2	0/1:0,30:30:30:1.00:2	0/1:0,16:32:16:1.00:2	./.	0/1:0,11:31:11:1.00:2
chr12	57871437	rs34160414	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,8:30:31:0.258:2	./.	./.	./.	./.	./.	./.
chr12	57873042	rs33927108	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,23:32:55:0.418:2	./.	./.	./.	./.	./.
chr12	57873498	rs79948748	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,32:33:70:0.457:2	./.	./.	0/1:37,26:32:63:0.413:2	./.	./.	0/1:32,50:33:82:0.610:2	./.
chr12	57873578	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:31:132:0.030:2	./.	./.	./.
chr12	57882857	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,49:32:102:0.480:2	./.
chr12	57906731	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:124,4:31:128:0.031:2	./.	./.	./.	./.	./.	./.
chr12	57911098	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,4:31:66:0.061:2	./.	./.	./.	./.	./.	./.	./.
chr12	57911160	rs697221	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,14:31:22:0.636:2	0/1:0,11:31:11:1.00:2	0/1:7,10:32:17:0.588:2	0/1:5,7:31:12:0.583:2	./.	./.	0/1:7,8:31:15:0.533:2	./.
chr12	57918085	rs61741508	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,17:31:28:0.607:2
chr12	57958313	rs775322	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,7:31:13:0.538:2	0/1:75,52:31:127:0.409:2	0/1:0,48:32:48:1.00:2	0/1:0,105:32:105:1.00:2	0/1:1,67:32:68:0.985:2	./.	./.	0/1:39,33:32:72:0.458:2	./.
chr12	57969937	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:32:131:0.031:2	./.	./.	./.	./.
chr12	57975700	rs113247976	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,34:32:75:0.453:2	./.	./.	./.	./.	./.	./.	./.
chr12	57985204	rs11537654	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,12:29:24:0.500:2	./.	./.	0/1:94,87:30:181:0.481:2	0/1:3,168:31:171:0.982:2	./.	./.	0/1:81,62:31:143:0.434:2	./.
chr12	57994679	rs2277319	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,31:31:61:0.508:2	./.	./.	./.	./.	./.	./.
chr12	57994743	rs775235	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:32:42:1.00:2	0/1:1,15:32:16:0.938:2	0/1:0,4:33:4:1.00:2	0/1:0,42:32:42:1.00:2	0/1:1,46:33:47:0.979:2	0/1:0,62:33:62:1.00:2	0/1:0,49:32:49:1.00:2	0/1:1,52:32:53:0.981:2	0/1:0,40:33:40:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,48:32:48:1.00:2
chr12	57995089	rs812873	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:32:32:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,62:33:62:1.00:2	0/1:1,40:32:41:0.976:2	0/1:0,35:32:35:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,42:33:42:1.00:2
chr12	58001352	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.	./.	./.
chr12	58004070	rs113892147	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	58005682	rs60586224	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr12	58007898	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:35:107:0.037:2	./.
chr12	58009372	rs2277323	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:28,28:31:56:0.500:2	0/1:13,15:31:28:0.536:2	./.	0/1:45,36:29:81:0.444:2	./.	./.	./.	./.	./.	./.	0/1:40,41:30:81:0.506:2
chr12	58010163	rs1564374	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,13:30:24:0.542:2	0/1:11,8:29:19:0.421:2	./.	0/1:14,8:30:22:0.364:2	0/1:19,13:27:32:0.406:2	0/1:15,23:28:38:0.605:2	0/1:1,25:28:26:0.962:2	./.	./.	0/1:7,13:28:20:0.650:2	0/1:10,13:29:23:0.565:2
chr12	58010627	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,9:13:44:0.209:2
chr12	58015494	rs923828	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,12:30:24:0.500:2	0/1:2,14:30:16:0.875:2	0/1:1,3:29:4:0.750:2	0/1:32,15:29:47:0.319:2	0/1:27,34:29:61:0.557:2	0/1:28,27:28:55:0.491:2	./.	0/1:1,75:30:76:0.987:2	0/1:0,39:31:39:1.00:2	0/1:18,22:30:40:0.550:2	0/1:7,10:29:17:0.588:2
chr12	58017701	rs7314152	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	0/1:29,31:31:60:0.517:2	0/1:34,16:31:50:0.320:2	0/1:0,71:31:71:1.00:2	./.	./.	0/1:25,20:31:45:0.444:2	./.
chr12	58018668	rs111924104	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,45:28:93:0.484:2	./.	./.	./.	./.	./.	./.
chr12	58019472	rs774895	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:33:28:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,38:32:39:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,42:32:42:1.00:2
chr12	58020582	rs17454674	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,35:31:116:0.302:2
chr12	58022024	rs11616065	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,40:31:88:0.455:2	./.	./.	./.	./.	./.	./.
chr12	58023981	rs715930	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:107,72:31:179:0.402:2	0/1:65,79:32:144:0.549:2	./.	0/1:98,87:32:185:0.470:2	./.	./.	./.	./.	./.	./.	0/1:93,85:32:178:0.478:2
chr12	58024995	rs143174548	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:31:56:0.071:2	./.	./.
chr12	58025813	rs774896	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	./.	./.	./.	./.	./.	./.
chr12	58110259	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:101,4:31:105:0.038:2	./.	./.	./.	./.	./.	./.
chr12	58112189	rs799265	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,25:32:56:0.446:2	0/1:21,17:32:38:0.447:2	0/1:7,3:32:10:0.300:2	0/1:54,33:32:87:0.379:2	0/1:29,37:32:67:0.561:2	0/1:55,42:32:97:0.433:2	./.	0/1:5,97:32:102:0.951:2	0/1:2,74:33:76:0.974:2	0/1:24,31:32:55:0.564:2	0/1:38,21:32:59:0.356:2
chr12	58114651	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,3:34:67:0.045:2	./.	./.
chr12	58126223	rs77372675	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,5:24:53:0.094:2
chr12	58126234	rs17852479	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,25:29:40:0.641:2	0/1:17,9:32:26:0.346:2	0/1:2,5:31:8:0.714:2	0/1:32,21:25:55:0.396:2	./.	0/1:29,24:27:53:0.453:2	./.	0/1:2,44:27:49:0.957:2	0/1:1,51:31:52:0.981:2	0/1:18,14:27:32:0.438:2	0/1:27,20:26:48:0.426:2
chr12	58127896	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,4:33:65:0.062:2	./.	./.	./.	./.	./.	./.	./.
chr12	58150867	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:170,4:33:174:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr12	58151911	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:32:87:0.046:2	./.
chr12	58158558	rs8176345	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,35:28:91:0.385:2	./.	./.	0/1:39,22:30:61:0.361:2	./.
chr12	58163149	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:36:150:0.027:2	./.	./.	./.
chr12	58168426	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:32:83:0.048:2	./.	./.	./.	./.
chr12	58174306	rs923829	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	0/1:25,18:26:43:0.419:2	0/1:0,34:27:34:1.00:2	./.	./.	0/1:33,21:27:54:0.389:2	./.
chr12	58176614	rs10747783	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:33:18:0.500:2	./.	./.	0/1:32,37:32:69:0.536:2	0/1:0,33:32:33:1.00:2	./.	./.	0/1:43,18:31:61:0.295:2	./.
chr12	58177437	rs2014886	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:27:6:0.500:2	0/1:0,6:27:6:1.00:2	./.	./.	./.	./.
chr12	58203449	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,5:28:171:0.029:2	./.	./.
chr12	58204283	rs2172521	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,55:33:56:0.982:2	0/1:0,52:32:52:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,73:33:73:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,103:32:103:1.00:2	0/1:0,79:33:79:1.00:2	0/1:1,98:33:99:0.990:2	0/1:0,79:33:79:1.00:2
chr12	58335626	rs3751325	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,24:33:40:0.600:2	0/1:18,15:32:33:0.455:2	./.	0/1:19,18:32:37:0.486:2	0/1:17,12:32:29:0.414:2	./.	0/1:26,18:32:44:0.409:2	0/1:25,26:33:51:0.510:2	./.	./.	0/1:22,7:33:29:0.241:2
chr12	58350480	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:34:94:0.043:2
chr12	58350618	rs117230607	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,35:32:79:0.443:2	./.	./.
chr12	58350631	rs10122	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,22:32:42:0.524:2	0/1:13,10:31:23:0.435:2	0/1:2,3:30:5:0.600:2	0/1:25,27:31:52:0.519:2	0/1:10,19:31:29:0.655:2	./.	0/1:18,14:31:32:0.438:2	0/1:35,20:31:55:0.364:2	./.	./.	0/1:41,54:31:95:0.568:2
chr12	59267862	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,11:32:21:0.524:2	./.	./.	./.	./.	./.	./.	./.
chr12	59270333	rs2279718	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,61:33:115:0.530:2	./.	./.
chr12	59271433	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:30:114:0.035:2	./.
chr12	59279660	rs11172796	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,6:32:28:0.214:2	./.	./.
chr12	59313248	rs12426969	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,36:32:83:0.434:2	./.	./.
chr12	60173356	rs3763980	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:29:8:1.00:2	./.	./.	./.	0/1:21,26:31:47:0.553:2	./.	0/1:37,36:32:73:0.493:2	0/1:39,20:31:59:0.339:2	0/1:0,66:31:66:1.00:2
chr12	60173363	rs78708164	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,22:30:53:0.415:2	./.	./.	./.	./.	./.	./.
chr12	60173406	rs3763979	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,36:32:99:0.364:2	./.	./.	./.
chr12	62104219	rs7399207	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,5:34:16:0.313:2	0/1:10,8:33:18:0.444:2	./.	0/1:23,14:33:37:0.378:2	0/1:10,11:32:21:0.524:2	0/1:17,6:33:23:0.261:2	0/1:9,7:34:16:0.438:2	./.	0/1:16,9:34:25:0.360:2	./.	0/1:12,12:33:24:0.500:2
chr12	62696599	rs11174420	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:54,49:33:103:0.476:2	0/1:31,26:32:57:0.456:2	./.	0/1:69,73:32:142:0.514:2	./.	0/1:75,45:30:120:0.375:2	./.	./.	0/1:56,56:33:112:0.500:2	0/1:47,49:32:96:0.510:2	./.
chr12	62777662	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:33:119:0.034:2	./.
chr12	62778065	rs2044846	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,23:31:42:0.548:2	0/1:11,11:31:22:0.500:2	./.	0/1:0,58:30:58:1.00:2	0/1:15,11:29:27:0.423:2	0/1:24,17:30:41:0.415:2	0/1:0,33:30:34:1.00:2	0/1:21,14:31:35:0.400:2	0/1:27,29:31:58:0.518:2	0/1:0,38:31:38:1.00:2	0/1:30,25:29:55:0.455:2
chr12	62798004	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,6:30:82:0.073:2	./.	./.	./.	./.	./.	./.
chr12	62926398	rs7957417	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,51:32:93:0.548:2	0/1:24,19:32:43:0.442:2	0/1:10,4:32:14:0.286:2	0/1:45,59:31:104:0.567:2	0/1:46,45:31:91:0.495:2	0/1:56,45:31:101:0.446:2	0/1:1,77:31:79:0.987:2	0/1:70,60:31:130:0.462:2	./.	0/1:43,47:32:90:0.522:2	0/1:52,27:30:79:0.342:2
chr12	62928633	rs10219555	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,24:31:33:0.727:2	0/1:8,13:30:21:0.619:2	0/1:1,4:32:5:0.800:2	0/1:30,18:30:48:0.375:2	0/1:26,10:30:36:0.278:2	0/1:31,13:32:44:0.295:2	0/1:0,70:31:70:1.00:2	0/1:21,30:31:51:0.588:2	./.	0/1:21,13:31:34:0.382:2	0/1:29,24:31:53:0.453:2
chr12	62932052	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:33:51:0.078:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	62938748	rs140799300	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,21:31:39:0.538:2	./.	./.	./.	./.
chr12	62954470	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,4:29:88:0.045:2	./.	./.	./.	./.	./.	./.
chr12	62979216	rs11174557	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:31:6:0.667:2	0/1:45,53:32:98:0.541:2	./.	./.	./.	0/1:42,31:31:73:0.425:2	0/1:81,55:32:136:0.404:2	0/1:45,41:32:86:0.477:2	./.
chr12	62997180	rs10877887	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,4:32:21:0.190:2	0/1:6,5:32:11:0.455:2	./.	0/1:10,11:33:21:0.524:2	0/1:12,6:27:18:0.333:2	./.	0/1:0,11:32:11:1.00:2	0/1:13,16:31:29:0.552:2	./.	0/1:10,5:32:15:0.333:2	0/1:6,8:30:14:0.571:2
chr12	63225911	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:31:149:0.027:2	./.	./.	./.	./.	./.
chr12	63544209	rs1042615	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:28:7:1.00:2	0/1:0,39:29:39:1.00:2	./.	0/1:20,18:29:38:0.474:2	0/1:0,20:29:20:1.00:2	0/1:14,14:27:28:0.500:2	0/1:14,13:30:27:0.481:2	0/1:21,6:30:27:0.222:2	0/1:6,5:30:11:0.455:2
chr12	63954300	rs12314553	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,52:31:131:0.397:2	./.	0/1:92,53:31:145:0.366:2	0/1:155,31:32:186:0.167:2	./.	0/1:74,52:32:126:0.413:2	./.	./.
chr12	63954304	rs1054891	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,136:33:137:0.993:2	0/1:0,77:33:77:1.00:2	./.	0/1:1,129:33:130:0.992:2	0/1:1,107:32:108:0.991:2	0/1:93,54:32:147:0.367:2	0/1:157,30:33:187:0.160:2	./.	0/1:78,55:33:133:0.414:2	0/1:1,122:33:123:0.992:2	0/1:67,67:33:134:0.500:2
chr12	63954415	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:32:168:0.024:2	./.	./.	./.
chr12	63964554	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:34:194:0.026:2	./.
chr12	63964599	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:107,5:32:112:0.045:2	./.	0/1:99,4:30:103:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr12	63964600	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:28:84:0.048:2	0/1:108,5:30:113:0.044:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:30:109:0.037:2
chr12	63976224	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:33:197:0.020:2	./.	./.
chr12	63987923	rs144982569	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,39:32:76:0.513:2	./.	./.	./.	./.	./.	./.
chr12	64020241	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:33:142:0.028:2
chr12	64020321	rs7310030	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,6:30:6:1.00:2	0/1:0,3:32:3:1.00:2	./.	0/1:0,21:31:21:1.00:2	0/1:0,13:31:13:1.00:2	0/1:16,10:31:26:0.385:2	0/1:15,25:32:40:0.625:2	0/1:10,4:31:14:0.286:2	0/1:20,12:30:32:0.375:2	0/1:0,11:30:11:1.00:2	0/1:0,18:32:18:1.00:2
chr12	64038193	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2	./.	./.	./.
chr12	64038276	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,10:32:113:0.088:2	./.	./.	./.	./.	./.	./.
chr12	64062023	rs10878073	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,40:28:41:0.976:2	0/1:0,13:28:13:1.00:2	0/1:0,10:30:10:1.00:2	./.	0/1:10,8:27:18:0.444:2	0/1:27,15:29:42:0.357:2	./.	0/1:34,18:25:52:0.346:2	./.	0/1:21,19:29:40:0.475:2	0/1:36,24:28:60:0.400:2
chr12	64062052	rs10878074	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:2,30:30:32:0.938:2	0/1:1,9:31:11:0.900:2	0/1:0,2:29:2:1.00:2	./.	./.	0/1:20,9:31:29:0.310:2	./.	0/1:14,10:29:24:0.417:2	./.	0/1:19,13:28:32:0.406:2	0/1:29,16:31:46:0.356:2
chr12	64062065	rs10878075	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:2,25:28:27:0.926:2	0/1:1,8:29:9:0.889:2	0/1:0,2:31:2:1.00:2	./.	./.	0/1:21,10:32:31:0.323:2	./.	0/1:10,6:31:16:0.375:2	./.	0/1:18,15:28:33:0.455:2	0/1:27,14:30:41:0.341:2
chr12	64173807	rs61935924	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,10:28:29:0.345:2	./.
chr12	64472803	rs789710	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:33:68:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,69:33:69:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,66:34:66:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,57:33:57:1.00:2
chr12	64472833	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:31:53:0.075:2	./.	./.	./.	./.	./.
chr12	64519806	rs789722	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,16:31:17:0.941:2	0/1:103,87:30:190:0.458:2	0/1:109,87:30:196:0.444:2	./.	./.	0/1:118,75:30:193:0.389:2	./.	0/1:3,179:30:182:0.984:2	0/1:88,95:30:183:0.519:2
chr12	64519811	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2	./.
chr12	64536195	rs79960944	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,19:14:107:0.179:2	0/1:73,16:15:89:0.180:2	./.	0/1:89,30:16:119:0.252:2	0/1:64,23:16:88:0.264:2	0/1:77,13:19:90:0.144:2	0/1:64,13:18:78:0.169:2	0/1:54,12:16:66:0.182:2
chr12	64587633	rs699638	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:31:63:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,59:33:59:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,69:31:70:1.00:2
chr12	64609562	rs2335390	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:32:60:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,98:31:98:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,104:31:104:1.00:2	0/1:0,82:31:82:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,93:32:93:1.00:2
chr12	64668747	rs113778554	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,15:32:30:0.500:2	./.	./.	./.
chr12	64669090	rs1002392	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:32:43:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,48:31:48:1.00:2	0/1:1,36:32:37:0.973:2	0/1:2,52:32:54:0.963:2	0/1:0,46:33:46:1.00:2	0/1:17,13:32:30:0.433:2	0/1:0,66:32:66:1.00:2
chr12	64678480	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,46:31:125:0.368:2	./.	./.	./.	./.	./.
chr12	64746833	rs73118352	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,13:29:26:0.500:2	0/1:9,8:30:17:0.471:2	./.	./.	./.	0/1:21,12:32:33:0.364:2	./.	./.
chr12	64803798	rs11175383	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,7:34:31:0.226:2	0/1:4,7:30:11:0.636:2	./.	./.	0/1:11,8:32:19:0.421:2	./.	./.	./.
chr12	64811883	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:31:131:0.031:2	./.	./.
chr12	64812808	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:31:177:0.023:2	./.	./.	./.	./.	./.
chr12	64815109	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,6:31:121:0.050:2	./.	./.
chr12	64824044	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:32:72:0.056:2	./.
chr12	64825475	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	0/1:148,4:36:152:0.026:2	./.	./.
chr12	64828630	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:33:191:0.021:2
chr12	64838922	rs6581565	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,10:32:11:0.909:2	0/1:0,7:32:7:1.00:2	./.	./.	0/1:5,4:30:9:0.444:2	0/1:11,4:30:15:0.267:2	0/1:1,16:31:17:0.941:2	0/1:14,4:33:18:0.222:2	./.	0/1:0,7:29:7:1.00:2	0/1:0,17:32:17:1.00:2
chr12	64849716	rs41292019	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,55:30:94:0.585:2	./.	./.	./.
chr12	64875787	rs7486100	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,35:31:35:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,2:31:2:1.00:2	./.	0/1:17,15:31:32:0.469:2	0/1:25,26:31:51:0.510:2	0/1:3,34:30:37:0.919:2	0/1:24,21:31:45:0.467:2	./.	0/1:1,30:32:31:0.968:2	0/1:0,42:32:42:1.00:2
chr12	65004520	rs77813527	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,5:34:8:0.625:2	./.	0/1:0,10:33:10:1.00:2	./.	./.	0/1:1,2:32:3:0.667:2	./.
chr12	65141588	rs2230291	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:86,73:32:159:0.459:2	0/1:47,57:32:104:0.548:2	0/1:22,10:31:32:0.313:2	./.	./.	./.	0/1:99,55:31:154:0.357:2	./.	./.	0/1:112,72:31:184:0.391:2	0/1:97,93:32:190:0.489:2
chr12	65146532	rs1147096	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,11:32:25:0.440:2	0/1:6,5:32:11:0.455:2	./.	0/1:16,5:31:21:0.238:2	0/1:0,8:32:8:1.00:2	./.	0/1:14,6:32:20:0.300:2	0/1:0,14:31:14:1.00:2	./.	0/1:4,3:32:7:0.429:2	0/1:21,6:33:27:0.222:2
chr12	65514266	rs7301320	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,48:28:108:0.444:2	0/1:37,40:29:77:0.519:2	0/1:0,16:30:16:1.00:2	0/1:58,59:30:117:0.504:2	0/1:0,67:30:67:1.00:2	0/1:77,42:30:119:0.353:2	0/1:0,64:28:64:1.00:2	0/1:0,123:29:123:1.00:2	0/1:0,131:30:131:1.00:2	0/1:0,84:29:84:1.00:2	0/1:3,162:30:165:0.982:2
chr12	65563545	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,3:32:12:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	65604694	rs11175678	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,41:33:99:0.414:2
chr12	65612386	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:31:103:0.039:2	./.	./.	./.	./.	./.
chr12	65634808	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,6:28:116:0.052:2	./.	./.	./.
chr12	66517626	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,5:30:142:0.035:2
chr12	66522675	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:31:152:0.026:2	0/1:162,4:31:166:0.024:2	0/1:133,9:31:142:0.063:2	./.	./.	0/1:128,4:32:132:0.030:2
chr12	66531758	rs147884415	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,20:25:50:0.400:2
chr12	66539660	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:33:65:0.062:2	./.	./.
chr12	66546100	rs8793	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:47,55:33:102:0.539:2	0/1:39,29:32:68:0.426:2	./.	./.	0/1:40,35:32:75:0.467:2	0/1:51,38:32:89:0.427:2	0/1:40,24:32:64:0.375:2	./.	./.	0/1:47,33:33:80:0.413:2	0/1:67,65:33:132:0.492:2
chr12	66605228	rs1152888	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:32:58:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,9:32:9:1.00:2	0/1:1,65:32:66:0.985:2	0/1:0,56:31:56:1.00:2	0/1:0,55:32:55:1.00:2	0/1:2,42:33:44:0.955:2	0/1:0,60:32:60:1.00:2	0/1:0,78:33:78:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,107:32:107:1.00:2
chr12	66638926	rs146120640	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,35:32:59:0.593:2	./.	./.	./.	./.
chr12	66639001	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,44:33:84:0.524:2
chr12	66696410	rs3741604	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:43,45:31:88:0.511:2	0/1:19,17:32:36:0.472:2	0/1:0,28:31:28:1.00:2	./.	0/1:80,107:31:187:0.572:2	./.	0/1:0,174:31:174:1.00:2	0/1:86,84:31:170:0.494:2	./.	0/1:54,65:32:119:0.546:2	0/1:1,122:30:123:0.992:2
chr12	66698869	rs145590612	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,7:31:30:0.233:2	./.	./.	./.
chr12	66698895	rs4430553	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:23,18:33:41:0.439:2	0/1:8,9:32:17:0.529:2	0/1:0,6:32:6:1.00:2	./.	0/1:17,8:33:25:0.320:2	./.	0/1:0,15:32:15:1.00:2	0/1:25,6:33:31:0.194:2	./.	0/1:16,18:33:34:0.529:2	0/1:0,60:33:60:1.00:2
chr12	66704225	rs75770066	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,27:33:50:0.540:2
chr12	66717784	rs35536133	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,17:31:39:0.436:2	0/1:22,11:31:33:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	66717910	rs34109029	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,21:33:49:0.429:2	0/1:13,16:33:29:0.552:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	66725160	rs1185244	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,20:32:48:0.417:2	0/1:20,18:32:38:0.474:2	0/1:0,27:32:27:1.00:2	./.	0/1:29,20:32:49:0.408:2	0/1:0,34:32:34:1.00:2	./.	./.
chr12	66725202	rs1168312	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,25:30:58:0.431:2	0/1:30,29:30:59:0.492:2	./.	./.	./.	0/1:35,18:30:53:0.340:2	./.	./.
chr12	66731864	rs1168329	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,6:33:20:0.300:2	0/1:18,5:32:23:0.217:2	0/1:0,17:32:17:1.00:2	./.	0/1:7,9:34:16:0.563:2	0/1:0,24:34:24:1.00:2	./.	./.
chr12	66770869	rs149294743	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,17:32:32:0.531:2	./.	./.	./.	./.	./.	./.
chr12	66773075	rs145115262	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,88:33:168:0.524:2	./.	./.
chr12	66786091	rs13277	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:33:42:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,52:34:52:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,30:33:30:1.00:2
chr12	66786171	rs144494437	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,27:33:70:0.386:2
chr12	66814487	rs7397862	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,24:30:26:0.923:2	0/1:6,6:30:12:0.500:2	./.	0/1:6,11:28:17:0.647:2	0/1:11,16:30:27:0.593:2	0/1:11,10:30:22:0.476:2	0/1:0,23:31:23:1.00:2	0/1:20,8:30:28:0.286:2
chr12	67699536	rs17781675	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,17:32:29:0.586:2	./.	./.	0/1:20,18:31:38:0.474:2	0/1:26,25:31:51:0.490:2
chr12	67706466	rs1060350	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,28:30:63:0.444:2	0/1:22,19:30:41:0.463:2	0/1:0,62:30:62:1.00:2	./.	0/1:0,61:31:61:1.00:2	0/1:35,36:31:71:0.507:2	0/1:25,12:30:37:0.324:2	0/1:28,35:31:63:0.556:2
chr12	68051743	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:33:91:0.044:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	68052178	rs3741644	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,4:28:11:0.364:2	0/1:1,81:27:82:0.988:2	0/1:41,38:29:79:0.481:2	0/1:1,73:27:74:0.986:2	./.	0/1:5,71:27:77:0.934:2	0/1:37,24:28:61:0.393:2	0/1:25,31:29:56:0.554:2	0/1:0,86:27:86:1.00:2
chr12	68054686	rs1136138	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,10:30:14:0.714:2	0/1:0,42:30:42:1.00:2	0/1:24,14:31:38:0.368:2	0/1:0,30:29:30:1.00:2	./.	0/1:2,40:31:42:0.952:2	0/1:31,23:31:54:0.426:2	0/1:34,19:28:53:0.358:2	0/1:0,57:30:57:1.00:2
chr12	68055199	rs1904545	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:31,33:31:64:0.516:2	0/1:0,192:32:192:1.00:2	0/1:102,89:31:191:0.466:2	0/1:0,191:31:191:1.00:2	./.	0/1:3,186:31:190:0.984:2	0/1:106,86:33:192:0.448:2	0/1:99,93:32:193:0.484:2	0/1:1,187:32:188:0.995:2
chr12	68055812	rs10467153	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,8:33:22:0.364:2	./.	0/1:3,3:32:6:0.500:2	0/1:9,7:34:16:0.438:2	./.	0/1:12,4:33:16:0.250:2
chr12	68055952	rs71452350	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,12:33:23:0.522:2	./.	./.
chr12	68619450	rs11570981	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:165,4:32:169:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr12	68707287	rs2306392	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:31,25:32:56:0.446:2	0/1:26,15:32:41:0.366:2	0/1:2,3:31:5:0.600:2	./.	./.	0/1:0,35:31:35:1.00:2	./.	0/1:34,15:30:49:0.306:2	./.	0/1:15,23:32:38:0.605:2	0/1:39,38:31:77:0.494:2
chr12	68708761	rs2306393	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,4:30:4:1.00:2	0/1:26,30:32:56:0.536:2	0/1:34,29:31:63:0.460:2	0/1:0,75:30:75:1.00:2	0/1:24,20:31:44:0.455:2	0/1:36,24:31:60:0.400:2	0/1:3,58:32:61:0.951:2	0/1:0,61:32:61:1.00:2	0/1:46,27:33:73:0.370:2
chr12	68709892	rs17224810	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:51,46:32:97:0.474:2	0/1:26,23:32:49:0.469:2	0/1:5,4:34:9:0.444:2	./.	0/1:42,50:31:92:0.543:2	./.	0/1:32,33:32:65:0.508:2	./.	./.	0/1:44,40:32:84:0.476:2	./.
chr12	68720335	rs17224845	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,22:30:34:0.647:2	./.	./.	./.	./.	0/1:25,26:32:51:0.510:2	./.	./.
chr12	68720627	rs962976	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:32:77:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,15:30:15:1.00:2	0/1:75,41:31:116:0.353:2	0/1:27,27:31:54:0.500:2	0/1:0,69:31:69:1.00:2	0/1:59,29:32:88:0.330:2	0/1:73,33:31:106:0.311:2	0/1:0,103:32:103:1.00:2	0/1:0,74:31:74:1.00:2	0/1:80,62:32:142:0.437:2
chr12	68724951	rs3741808	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,38:33:38:1.00:2	0/1:1,30:32:31:0.968:2	./.	0/1:22,20:33:42:0.476:2	0/1:13,13:32:26:0.500:2	0/1:0,27:33:27:1.00:2	0/1:13,14:32:27:0.519:2	0/1:27,20:33:47:0.426:2	0/1:0,41:33:41:1.00:2	0/1:0,31:33:31:1.00:2	0/1:32,35:33:67:0.522:2
chr12	69047921	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,10:31:196:0.051:2	./.	./.	./.	./.	./.
chr12	69050230	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:33:103:0.039:2	./.
chr12	69050904	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:140,4:31:144:0.028:2	./.	./.	./.	./.	./.	./.
chr12	69050938	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,4:32:36:0.111:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	69082805	rs2259588	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,20:31:43:0.465:2	0/1:11,13:32:24:0.542:2	./.	./.	0/1:25,23:30:48:0.479:2	0/1:1,65:31:66:0.985:2	0/1:23,24:32:47:0.511:2	./.	./.	./.	./.
chr12	69090684	rs35054844	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,16:32:44:0.364:2	./.	./.	./.	./.	0/1:24,23:32:47:0.489:2	./.
chr12	69115698	rs17851475	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:37,15:33:52:0.288:2	0/1:22,18:33:40:0.450:2	./.	./.	0/1:22,24:31:46:0.522:2	0/1:0,54:32:54:1.00:2	0/1:46,31:32:77:0.403:2	./.	./.	./.	./.
chr12	69158567	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,3:35:80:0.038:2	./.	./.	./.	./.	./.	./.
chr12	69214168	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:31:136:0.029:2	./.	./.	./.
chr12	69222634	rs1795480	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,4:33:103:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr12	69233055	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,4:30:35:0.114:2	./.	./.	./.	./.	./.	./.	./.
chr12	69233215	rs769412	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,12:34:40:0.300:2	./.	./.	0/1:31,30:32:61:0.492:2	./.
chr12	69250412	rs201687643	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,55:33:115:0.478:2
chr12	69252715	rs1143653	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:33:10:0.400:2	./.	0/1:11,9:33:20:0.450:2	0/1:26,29:33:55:0.527:2	0/1:15,10:33:25:0.400:2	./.	0/1:24,22:34:46:0.478:2	./.	./.
chr12	69260779	rs33925480	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:72,49:32:121:0.405:2	0/1:48,31:32:79:0.392:2	./.	0/1:83,61:32:144:0.424:2	./.	0/1:61,65:31:126:0.516:2	./.	./.	./.	0/1:79,52:32:131:0.397:2	./.
chr12	69265578	rs2228654	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,61:32:131:0.466:2	0/1:53,57:32:110:0.518:2	0/1:18,13:33:31:0.419:2	0/1:93,86:32:179:0.480:2	0/1:61,57:32:118:0.483:2	0/1:81,82:32:163:0.503:2	0/1:64,69:32:133:0.519:2	0/1:3,187:32:190:0.984:2	0/1:66,74:33:140:0.529:2	0/1:85,77:31:162:0.475:2	0/1:5,160:33:165:0.970:2
chr12	69646914	rs2305641	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,32:31:92:0.348:2	0/1:41,28:31:69:0.406:2	0/1:43,34:31:77:0.442:2	0/1:3,51:32:54:0.944:2	0/1:42,28:32:70:0.400:2	./.	0/1:0,69:32:69:1.00:2	0/1:1,129:32:130:0.992:2
chr12	69742188	rs513342	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,102:30:198:0.515:2	0/1:83,93:31:176:0.528:2	./.	./.
chr12	69744014	rs1800973	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,37:30:74:0.500:2	0/1:22,31:31:53:0.585:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	69764717	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.
chr12	69783937	rs315121	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,5:31:17:0.294:2	0/1:23,15:32:38:0.395:2	./.	./.
chr12	69967862	rs547497	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,19:32:44:0.432:2	0/1:14,14:32:28:0.500:2	./.	0/1:13,20:32:33:0.606:2	0/1:17,17:31:34:0.500:2	0/1:18,16:32:34:0.471:2	0/1:15,21:32:36:0.583:2	0/1:0,52:32:52:1.00:2	./.	0/1:0,65:32:65:1.00:2	0/1:29,15:32:45:0.341:2
chr12	69968189	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:31:74:0.054:2
chr12	69981714	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:32:55:0.073:2	./.	./.	./.
chr12	69981731	rs186994183	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,12:31:26:0.462:2	./.	./.	./.	./.	./.	./.
chr12	69986788	rs1043434	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,24:30:45:0.533:2	./.	0/1:18,9:28:27:0.333:2	./.	./.	./.	./.	0/1:18,13:27:31:0.419:2
chr12	69995039	rs11177742	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,3:30:17:0.176:2	0/1:49,34:30:83:0.410:2	./.	0/1:57,39:30:96:0.406:2	./.	./.	./.	./.	./.
chr12	70004259	rs145823585	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:40,27:32:68:0.403:2	0/1:15,19:31:34:0.559:2	./.	./.	./.	./.	./.	0/1:78,58:31:136:0.426:2	./.	./.	./.
chr12	70004558	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:32:74:0.054:2
chr12	70037520	rs61747221	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:32:149:0.027:2	./.	./.	./.
chr12	70048829	rs17106884	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,39:33:76:0.513:2	./.	./.	./.	./.	./.	./.	./.
chr12	70048851	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,6:34:93:0.065:2	./.	./.
chr12	70049122	rs74799373	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,32:33:60:0.533:2	./.	./.	./.	./.
chr12	70070744	rs145416134	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,42:32:106:0.400:2	./.	./.	./.	./.	./.
chr12	70078387	rs11177791	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:37,23:34:60:0.383:2	0/1:16,23:33:39:0.590:2	0/1:2,4:33:6:0.667:2	./.	0/1:25,24:32:49:0.490:2	0/1:34,33:32:68:0.493:2	./.	0/1:42,25:33:67:0.373:2	./.	0/1:39,21:33:60:0.350:2	./.
chr12	70091432	rs775429	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:32:50:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,58:33:58:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,62:32:62:1.00:2
chr12	70091452	rs1025016	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,27:33:59:0.458:2	./.	./.	0/1:36,45:33:81:0.556:2
chr12	70193992	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,4:32:60:0.067:2	./.	./.	./.	./.	./.	./.
chr12	70736113	rs17108008	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:41,27:31:68:0.397:2	0/1:24,16:30:40:0.400:2	./.	./.	0/1:52,28:30:80:0.350:2	./.	./.	./.	./.	./.	0/1:45,59:30:104:0.567:2
chr12	70925864	rs17226367	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,7:32:23:0.304:2	./.	0/1:68,56:33:124:0.452:2	./.	./.	./.	./.	./.	0/1:69,59:33:128:0.461:2
chr12	70928616	rs3752703	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,28:32:51:0.549:2	0/1:11,12:32:23:0.522:2	./.	0/1:24,24:31:48:0.500:2	0/1:17,21:31:38:0.553:2	./.	./.	./.	./.	./.	./.
chr12	70928724	rs582954	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,30:33:53:0.566:2	0/1:9,25:32:34:0.735:2	0/1:0,6:32:6:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,47:32:47:1.00:2	0/1:1,64:32:65:0.985:2	0/1:0,47:32:47:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,62:32:62:1.00:2
chr12	70949014	rs61758735	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,62:32:160:0.388:2	./.
chr12	70953277	rs2303963	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,4:29:13:0.308:2	0/1:83,83:29:166:0.500:2	./.	0/1:94,72:29:166:0.434:2	0/1:70,61:29:131:0.466:2	0/1:90,90:30:180:0.500:2	0/1:87,101:31:188:0.537:2	./.	0/1:78,53:30:131:0.405:2
chr12	70963619	rs2304821	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:55,61:31:116:0.526:2	0/1:38,43:32:81:0.531:2	./.	./.	0/1:100,59:32:159:0.371:2	./.	./.	./.	0/1:87,66:32:153:0.431:2	./.	./.
chr12	70965792	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:32:49:0.082:2	./.	./.	./.
chr12	70983895	rs2165627	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:77,53:32:130:0.408:2	0/1:32,28:32:60:0.467:2	./.	./.	0/1:82,74:32:156:0.474:2	./.	0/1:5,161:32:166:0.970:2	./.	./.	./.	./.
chr12	70988287	rs34615667	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:54,45:28:99:0.455:2	0/1:35,21:27:56:0.375:2	./.	./.	0/1:64,49:29:113:0.434:2	./.	0/1:4,125:29:129:0.969:2	./.	./.	./.	./.
chr12	70989977	rs11178317	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,57:32:57:1.00:2	./.	./.	./.	./.	0/1:50,25:32:75:0.333:2
chr12	70990054	rs2465811	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:17,17:29:34:0.500:2	0/1:6,15:28:21:0.714:2	./.	./.	0/1:0,16:29:16:1.00:2	./.	./.	0/1:17,23:29:40:0.575:2	./.	0/1:0,31:28:31:1.00:2	./.
chr12	71002865	rs2717430	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:97,49:33:146:0.336:2	0/1:49,60:32:109:0.550:2	./.	./.	0/1:2,78:32:81:0.975:2	0/1:2,168:32:170:0.988:2	./.	0/1:1,124:32:125:0.992:2	./.	0/1:1,116:32:117:0.991:2	0/1:121,67:32:188:0.356:2
chr12	71002893	rs2252784	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:124,59:32:183:0.322:2	0/1:57,62:32:119:0.521:2	./.	./.	0/1:4,104:32:108:0.963:2	0/1:2,186:32:189:0.989:2	./.	0/1:1,178:32:179:0.994:2	./.	0/1:1,133:33:134:0.993:2	0/1:120,68:33:188:0.362:2
chr12	71016340	rs7298147	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	./.	0/1:27,24:31:51:0.471:2	./.	./.	./.	0/1:58,50:30:108:0.463:2
chr12	71029680	rs74101511	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,8:33:19:0.421:2	./.	./.	./.	./.	./.	./.	./.	0/1:107,71:31:178:0.399:2
chr12	71029733	rs2584021	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,77:32:176:0.438:2	0/1:114,78:31:193:0.406:2	./.	./.	./.
chr12	71078528	rs35390084	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,54:32:102:0.529:2	./.	0/1:69,66:31:135:0.489:2
chr12	71094955	rs35387004	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,28:31:68:0.412:2	./.	./.	./.
chr12	71139664	rs3803036	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:80,68:32:148:0.459:2	0/1:52,45:33:97:0.464:2	0/1:0,27:33:27:1.00:2	0/1:1,156:33:157:0.994:2	0/1:1,189:31:190:0.995:2	0/1:109,78:31:187:0.417:2	0/1:0,185:33:186:1.00:2	0/1:1,189:33:190:0.995:2	0/1:74,106:33:180:0.589:2	0/1:0,133:33:133:1.00:2	0/1:87,74:33:161:0.460:2
chr12	71158453	rs144705265	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,42:31:91:0.462:2	./.	./.	./.	./.
chr12	71314102	rs12830783	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,23:30:61:0.377:2
chr12	71519096	rs1051344	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,21:34:38:0.553:2	0/1:8,17:32:25:0.680:2	./.	0/1:0,32:33:32:1.00:2	0/1:0,28:33:28:1.00:2	./.	0/1:1,21:32:22:0.955:2	./.	0/1:31,28:34:59:0.475:2	0/1:18,22:32:40:0.550:2	0/1:0,50:33:50:1.00:2
chr12	71523134	rs1051334	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,27:33:51:0.529:2	0/1:23,12:32:35:0.343:2	0/1:2,6:33:8:0.750:2	0/1:0,72:33:72:1.00:2	0/1:0,42:32:42:1.00:2	./.	0/1:0,43:33:43:1.00:2	./.	0/1:31,36:34:67:0.537:2	0/1:20,36:33:56:0.643:2	0/1:0,76:33:76:1.00:2
chr12	71533534	rs3763978	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,21:34:51:0.412:2	0/1:21,18:33:39:0.462:2	0/1:5,4:33:9:0.444:2	0/1:2,76:33:78:0.974:2	0/1:2,81:32:83:0.976:2	./.	0/1:2,72:33:74:0.973:2	./.	0/1:47,42:34:89:0.472:2	0/1:19,20:32:39:0.513:2	0/1:0,88:33:88:1.00:2
chr12	71960208	rs1797372	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:31:40:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,7:31:7:1.00:2	0/1:1,49:32:50:0.980:2	0/1:0,31:31:31:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,44:30:44:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,77:32:77:1.00:2
chr12	71977644	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,8:29:193:0.042:2	./.	./.	./.	./.	./.	./.	./.
chr12	71977787	rs17109924	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,29:27:65:0.446:2	./.	./.	./.	./.	./.	0/1:76,74:29:150:0.493:2
chr12	71978118	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,69:31:180:0.383:2	./.	./.
chr12	71978131	rs113809442	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:74,43:29:117:0.368:2	./.	./.	./.	./.	./.	./.
chr12	72004900	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,4:28:15:0.267:2	./.
chr12	72008421	rs11541286	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,9:33:16:0.563:2	./.	./.	./.	./.	./.	0/1:25,21:33:46:0.457:2
chr12	72009051	rs17109991	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,40:32:70:0.571:2	./.	./.	./.	./.	./.
chr12	72013832	rs1298463	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:32:88:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,121:32:121:1.00:2	0/1:1,69:32:70:0.986:2	0/1:43,49:31:92:0.533:2	0/1:0,78:32:78:1.00:2	0/1:67,58:32:125:0.464:2	0/1:73,67:33:140:0.479:2	0/1:0,66:32:66:1.00:2	0/1:0,127:32:127:1.00:2
chr12	72018028	rs2304272	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,16:30:39:0.410:2	./.	./.	./.
chr12	72022775	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:30:75:0.053:2	./.
chr12	72030270	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	72050682	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:32:153:0.026:2
chr12	72070710	rs17110155	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,53:31:127:0.421:2	./.	./.	./.	./.	./.
chr12	72163657	rs147862360	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,7:32:15:0.467:2	./.	./.	./.	./.	./.	./.	./.
chr12	72164395	rs3741688	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,10:31:30:0.333:2	./.	./.	./.
chr12	72176401	rs34264044	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,58:30:126:0.464:2	./.	./.	./.	./.	./.
chr12	72179446	rs61754230	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,45:32:83:0.542:2	./.	./.	./.	./.	./.	./.	./.
chr12	72287056	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:27:35:0.114:2	./.	./.	./.	./.	./.
chr12	72307616	rs3759171	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:23,16:34:39:0.410:2	0/1:5,5:33:10:0.500:2	0/1:4,2:35:6:0.333:2	./.	./.	0/1:12,13:32:25:0.520:2	./.	0/1:18,21:33:39:0.538:2	./.	0/1:0,26:34:26:1.00:2	0/1:0,44:33:44:1.00:2
chr12	72307637	rs11178983	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,17:28:44:0.386:2	0/1:39,27:29:66:0.409:2
chr12	72312268	rs11178985	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,38:32:77:0.494:2	0/1:18,23:32:41:0.561:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,36:32:82:0.444:2
chr12	72335393	rs74510566	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,17:32:24:0.708:2	./.
chr12	72372862	rs7305115	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,25:31:26:0.962:2	0/1:0,16:32:16:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,32:31:32:1.00:2	0/1:15,19:30:34:0.559:2	0/1:15,16:30:31:0.516:2	0/1:0,36:31:36:1.00:2	0/1:0,42:32:42:1.00:2	0/1:23,21:31:44:0.477:2	0/1:26,30:30:56:0.536:2
chr12	72416235	rs4290270	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,44:33:44:1.00:2	0/1:0,18:33:18:1.00:2	./.	0/1:1,53:33:55:0.981:2	0/1:0,57:31:57:1.00:2	0/1:1,66:32:67:0.985:2	0/1:48,23:32:71:0.324:2	0/1:0,64:32:64:1.00:2	0/1:0,60:33:60:1.00:2	0/1:0,59:33:59:1.00:2	0/1:0,82:32:82:1.00:2
chr12	72956782	rs79522035	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,54:31:122:0.443:2	./.	./.	./.	./.	./.	./.	./.
chr12	73050722	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:32:116:0.035:2
chr12	74932159	rs590352	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,7:27:7:1.00:2	0/1:0,7:31:7:1.00:2	./.	0/1:0,23:32:23:1.00:2	0/1:9,9:31:18:0.500:2	0/1:7,10:31:17:0.588:2	./.	0/1:11,8:32:19:0.421:2	0/1:7,4:33:11:0.364:2	0/1:11,3:35:14:0.214:2	./.
chr12	74932565	rs625531	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:33:74:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,97:33:97:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,102:31:102:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,128:33:128:1.00:2	0/1:0,89:33:89:1.00:2	0/1:0,118:32:118:1.00:2
chr12	74933166	rs2605380	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:31:66:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,42:30:42:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,57:31:57:1.00:2
chr12	74933323	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,18:29:39:0.462:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	74933868	rs5002508	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,7:30:13:0.538:2	0/1:6,11:31:17:0.647:2	./.	0/1:6,7:32:13:0.538:2	0/1:8,8:29:16:0.500:2
chr12	74934072	rs1044583	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:106,80:32:186:0.430:2	0/1:84,92:33:176:0.523:2	0/1:106,75:33:181:0.414:2	./.	0/1:103,63:34:167:0.380:2	./.	./.
chr12	74934162	rs1389488	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,59:31:116:0.509:2	0/1:81,62:31:143:0.434:2	./.	0/1:73,66:31:139:0.475:2	0/1:82,95:31:177:0.537:2
chr12	74934589	rs73190463	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,21:31:66:0.318:2	0/1:31,19:31:50:0.380:2	./.	./.	./.	./.
chr12	74934634	rs1389487	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:30:53:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,3:25:3:1.00:2	0/1:0,44:30:44:1.00:2	0/1:0,31:28:31:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,24:30:24:1.00:2	0/1:1,41:30:42:0.976:2	0/1:0,51:30:51:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,54:30:54:1.00:2
chr12	74934637	rs1389486	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:32:53:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,3:29:3:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,54:32:54:1.00:2
chr12	74934743	rs8744	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:31:52:1.00:2	0/1:0,37:32:37:1.00:2	0/1:1,3:31:4:0.750:2	0/1:24,31:31:55:0.564:2	./.	./.	./.	0/1:17,15:32:32:0.469:2	0/1:24,12:32:36:0.333:2	0/1:18,19:31:37:0.514:2	0/1:26,35:31:61:0.574:2
chr12	75601389	rs61735712	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:25,24:31:49:0.490:2	0/1:3,12:31:15:0.800:2	./.	0/1:35,28:30:63:0.444:2	./.	./.	./.	./.	./.	0/1:12,32:31:44:0.727:2	./.
chr12	75601443	rs61932914	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:13,12:30:25:0.480:2	0/1:3,7:32:10:0.700:2	./.	0/1:16,13:29:29:0.448:2	./.	./.	./.	./.	./.	./.	./.
chr12	75683497	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:32:8:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	75715330	rs10879901	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,40:32:90:0.444:2	0/1:31,26:32:57:0.456:2	0/1:7,3:31:10:0.300:2	0/1:70,31:31:101:0.307:2	0/1:67,30:31:97:0.309:2	0/1:63,42:31:105:0.400:2	./.	./.	0/1:62,45:32:107:0.421:2	./.	./.
chr12	75785100	rs11180483	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,53:28:124:0.431:2	./.	0/1:89,64:29:153:0.418:2	0/1:74,67:28:141:0.475:2	0/1:5,130:28:135:0.963:2	0/1:82,58:30:140:0.414:2	0/1:84,67:29:151:0.444:2	0/1:66,72:29:138:0.522:2
chr12	75884254	rs28932170	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,17:33:32:0.531:2	0/1:14,9:32:23:0.391:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	75900382	rs11540407	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:13,13:31:26:0.500:2	0/1:8,4:31:12:0.333:2	0/1:1,3:32:4:0.750:2	./.	./.	./.	0/1:9,5:32:14:0.357:2	./.	0/1:21,12:32:33:0.364:2	./.	./.
chr12	75900588	rs2070162	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:25,24:33:50:0.490:2	0/1:22,16:32:38:0.421:2	0/1:8,3:35:11:0.273:2	./.	./.	./.	0/1:23,27:33:50:0.540:2	./.	0/1:53,46:34:99:0.465:2	./.	./.
chr12	76442232	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:34:102:0.039:2	./.	./.	./.	./.	./.
chr12	76447555	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:30:124:0.032:2
chr12	76449900	rs1059143	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,105:32:109:0.963:2	./.	0/1:14,8:33:22:0.364:2	0/1:70,56:32:129:0.444:2	0/1:0,75:31:75:1.00:2	0/1:72,56:32:129:0.438:2	0/1:0,66:32:66:1.00:2	0/1:65,41:32:108:0.387:2	0/1:0,129:34:129:1.00:2	0/1:0,101:33:101:1.00:2	0/1:0,192:33:192:1.00:2
chr12	76453966	rs4663	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,168:32:168:1.00:2	0/1:1,110:32:111:0.991:2	0/1:23,11:31:35:0.324:2	0/1:110,85:32:195:0.436:2	0/1:4,117:32:121:0.967:2	0/1:101,88:31:189:0.466:2	0/1:131,64:32:195:0.328:2	0/1:105,91:32:196:0.464:2	0/1:105,87:33:192:0.453:2	0/1:102,86:32:188:0.457:2	0/1:3,190:32:193:0.984:2
chr12	76453989	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,9:31:191:0.047:2	./.	./.	./.
chr12	76740149	rs35676114	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,29:30:68:0.426:2	./.	./.	./.	./.	./.
chr12	77191258	rs17813691	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,17:32:53:0.321:2	./.	./.	./.	./.	./.	./.	./.
chr12	77216281	rs17813975	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,40:31:83:0.482:2	0/1:41,20:31:61:0.328:2	./.	./.	./.	0/1:62,67:30:129:0.519:2	./.	./.	0/1:30,42:30:72:0.583:2	./.	0/1:62,45:31:107:0.421:2
chr12	77222210	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:31:166:0.024:2	./.	./.	./.	./.	./.
chr12	77242041	rs11115757	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:99,93:31:192:0.484:2	0/1:48,57:31:105:0.543:2	0/1:15,16:30:31:0.516:2	./.	./.	./.	0/1:122,77:30:199:0.387:2	./.	./.	./.	./.
chr12	77244642	rs11115779	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:41,38:32:79:0.481:2	0/1:25,33:33:58:0.569:2	0/1:5,7:33:12:0.583:2	./.	./.	./.	0/1:41,21:30:62:0.339:2	./.	./.	./.	./.
chr12	77252729	rs368010022	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:134,7:31:141:0.050:2	./.	./.	./.	./.	./.	./.
chr12	77257008	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,43:33:83:0.518:2	./.	./.
chr12	77419341	rs310831	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,38:32:73:0.521:2	./.
chr12	77419593	rs310830	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,15:32:45:0.333:2	./.
chr12	77421778	rs35158210	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:42,60:33:102:0.588:2	0/1:25,42:32:67:0.627:2	./.	./.	0/1:28,25:32:53:0.472:2	./.	./.	./.	./.	./.	0/1:70,68:31:138:0.493:2
chr12	77438436	rs2242384	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,48:28:113:0.425:2	0/1:44,36:31:80:0.450:2	./.	0/1:83,67:31:150:0.447:2	0/1:66,47:30:113:0.416:2	./.
chr12	77449790	rs310791	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:32:79:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,9:34:9:1.00:2	0/1:43,44:32:87:0.506:2	0/1:0,62:33:62:1.00:2	0/1:0,95:33:95:1.00:2	0/1:0,57:34:57:1.00:2	0/1:0,88:33:88:1.00:2	0/1:0,102:33:102:1.00:2	0/1:35,33:32:68:0.485:2	0/1:0,122:33:122:1.00:2
chr12	77458409	rs61744271	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,33:30:72:0.458:2	./.	./.	./.	./.	./.
chr12	78225299	rs61754235	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,66:30:151:0.437:2	./.	./.	./.
chr12	78225374	rs10735309	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:33:69:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,88:33:88:1.00:2	0/1:0,81:33:81:1.00:2	0/1:0,86:33:86:1.00:2	0/1:0,96:33:96:1.00:2	0/1:0,98:32:98:1.00:2	0/1:0,89:33:89:1.00:2	0/1:0,70:33:70:1.00:2	0/1:0,76:33:76:1.00:2
chr12	78334179	rs17817265	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,15:31:45:0.341:2	./.
chr12	78400884	rs34276383	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,6:33:14:0.429:2	0/1:6,5:32:11:0.455:2	./.	0/1:9,7:31:16:0.438:2	0/1:5,8:29:13:0.615:2	./.	0/1:4,8:31:12:0.667:2	./.	0/1:12,12:32:24:0.500:2	./.	./.
chr12	78530979	rs1852464	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,52:32:52:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,8:32:8:1.00:2	./.	0/1:0,38:31:38:1.00:2	./.	./.	0/1:37,29:31:66:0.439:2	0/1:37,22:31:59:0.373:2	0/1:0,62:32:62:1.00:2	./.
chr12	78540122	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:29:67:0.060:2	./.	./.	./.
chr12	78542699	rs366527	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:38,36:27:74:0.486:2	0/1:20,23:28:43:0.535:2	./.	./.	0/1:38,38:27:76:0.500:2	./.	./.	0/1:58,50:28:108:0.463:2	0/1:44,59:29:103:0.573:2	0/1:35,35:29:70:0.500:2	./.
chr12	78562618	rs383190	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,11:30:36:0.306:2	./.
chr12	78582496	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:30:73:0.055:2	./.	./.	./.
chr12	78598891	rs9971904	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,25:29:38:0.658:2	0/1:11,13:32:24:0.542:2	./.	0/1:23,23:31:46:0.500:2	0/1:0,56:31:56:1.00:2	./.	0/1:40,21:31:61:0.344:2	0/1:28,22:32:50:0.440:2	0/1:37,31:31:68:0.456:2	./.	0/1:20,20:32:41:0.500:2
chr12	79611374	rs2037743	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:15,12:32:27:0.444:2	0/1:12,7:32:19:0.368:2	./.	0/1:0,24:31:25:1.00:2	./.	0/1:0,28:30:28:1.00:2	0/1:0,34:31:34:1.00:2	0/1:20,21:31:41:0.512:2	0/1:0,15:32:15:1.00:2	0/1:11,10:32:21:0.476:2	0/1:0,35:30:35:1.00:2
chr12	80014907	rs2307223	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:31:65:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,11:31:13:1.00:2	0/1:2,125:30:127:0.984:2	0/1:0,127:30:127:1.00:2	0/1:61,60:30:121:0.496:2	0/1:67,64:31:131:0.489:2	0/1:1,159:30:161:0.994:2	0/1:66,59:31:125:0.472:2	0/1:65,51:31:118:0.440:2	0/1:0,135:32:135:1.00:2
chr12	80189495	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:32:192:0.021:2	./.	./.	./.	./.
chr12	80189517	rs113668494	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,56:31:142:0.394:2	./.	./.	./.	./.	./.	./.
chr12	80190560	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:36:87:0.046:2	./.	./.
chr12	80201087	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:33:45:0.089:2
chr12	80647355	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:33:163:0.025:2	./.	./.
chr12	80660267	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,5:30:196:0.026:2
chr12	80663952	rs11114378	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,24:30:79:0.304:2	./.	./.	0/1:42,32:30:74:0.432:2	./.	./.	./.
chr12	80712420	rs10778725	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:31:24:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,42:32:42:1.00:2
chr12	80722892	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:31:159:0.025:2	./.	./.	./.	./.
chr12	80735737	rs61735664	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,22:32:39:0.564:2	./.	./.	./.	./.	./.	./.	./.
chr12	80735771	rs10778727	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,52:30:53:0.981:2	0/1:0,27:30:27:1.00:2	0/1:6,5:31:11:0.455:2	0/1:36,26:30:62:0.419:2	0/1:24,30:30:54:0.556:2	0/1:0,53:29:53:1.00:2	0/1:40,24:30:64:0.375:2	0/1:33,30:29:63:0.476:2	./.	0/1:38,20:30:58:0.345:2	./.
chr12	80747168	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:32:146:0.027:2	./.	./.	./.
chr12	80747209	rs7312569	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,6:32:13:0.462:2	0/1:56,72:33:128:0.563:2	./.	./.	0/1:61,73:32:136:0.545:2	./.	0/1:97,72:33:169:0.426:2	0/1:62,34:33:96:0.354:2	0/1:2,99:33:101:0.980:2
chr12	80747242	rs7297767	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,85:32:86:0.988:2	0/1:0,51:32:51:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,103:32:103:1.00:2	0/1:59,51:32:110:0.464:2	0/1:0,95:31:95:1.00:2	0/1:1,107:32:108:0.991:2	0/1:72,82:33:154:0.532:2	0/1:0,122:33:122:1.00:2	0/1:0,94:32:95:1.00:2	0/1:0,97:32:97:1.00:2
chr12	80750659	rs11836060	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:31:10:0.400:2	0/1:62,30:32:93:0.326:2	./.	./.	0/1:43,26:32:69:0.377:2	./.	0/1:79,36:33:115:0.313:2	0/1:40,38:32:78:0.487:2	0/1:0,140:32:140:1.00:2
chr12	80761411	rs11114416	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,14:30:43:0.326:2	./.	./.	0/1:13,11:32:24:0.458:2	./.	0/1:24,14:31:38:0.368:2	0/1:15,8:32:23:0.348:2	0/1:1,38:33:39:0.974:2
chr12	80761430	rs1551118	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:31:37:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,3:29:3:1.00:2	0/1:0,28:31:29:1.00:2	0/1:12,7:30:19:0.368:2	0/1:0,29:30:29:1.00:2	0/1:1,18:31:19:0.947:2	0/1:17,13:31:30:0.433:2	0/1:0,34:31:34:1.00:2	0/1:1,14:30:15:0.933:2	0/1:0,38:31:38:1.00:2
chr12	80761465	rs2717482	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:33:34:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,22:33:22:1.00:2	0/1:17,5:33:22:0.227:2	0/1:0,37:32:37:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,19:33:19:1.00:2	0/1:0,43:33:43:1.00:2
chr12	80765800	rs1551122	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:33:41:1.00:2	0/1:0,13:32:13:1.00:2	0/1:5,4:33:9:0.444:2	0/1:25,31:33:56:0.554:2	0/1:32,13:33:45:0.289:2	0/1:0,41:32:41:1.00:2	0/1:12,15:33:27:0.556:2	0/1:31,22:33:53:0.415:2	./.	0/1:18,13:33:31:0.419:2	./.
chr12	80771813	rs2717477	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:32:56:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,56:31:56:1.00:2	0/1:47,18:31:65:0.277:2	0/1:2,54:31:56:0.964:2	0/1:0,59:32:59:1.00:2	0/1:33,27:31:60:0.450:2	0/1:0,45:32:45:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,54:32:54:1.00:2
chr12	80865948	rs61729291	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:43,52:31:95:0.547:2	0/1:43,22:29:65:0.338:2	./.	0/1:55,67:31:122:0.549:2	./.	./.	./.	./.	./.	./.	0/1:95,72:30:167:0.431:2
chr12	80878310	rs61729287	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,19:29:30:0.633:2	./.	./.	./.
chr12	80889829	rs10778752	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:31:81:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,112:31:112:1.00:2	0/1:1,61:30:62:0.984:2	0/1:0,117:30:117:1.00:2	0/1:4,104:31:108:0.963:2	0/1:1,144:31:145:0.993:2	0/1:4,154:31:158:0.975:2	0/1:0,111:31:111:1.00:2	0/1:0,111:30:112:1.00:2
chr12	80899901	rs11114486	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,12:32:50:0.240:2	0/1:28,12:32:40:0.300:2	0/1:0,14:31:14:1.00:2	0/1:48,35:31:83:0.422:2	0/1:29,14:31:43:0.326:2	0/1:38,22:31:60:0.367:2	./.	0/1:32,25:31:57:0.439:2	0/1:0,75:32:75:1.00:2	0/1:40,28:31:68:0.412:2	./.
chr12	80900348	rs7965277	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,5:33:16:0.313:2	./.	./.	0/1:5,9:33:14:0.643:2	0/1:2,4:31:6:0.667:2	0/1:7,6:31:13:0.462:2	0/1:0,8:31:8:1.00:2	0/1:10,4:32:14:0.286:2	./.	0/1:8,3:30:11:0.273:2	0/1:0,38:32:38:1.00:2
chr12	80900397	rs12824064	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,16:33:29:0.571:2	0/1:7,7:32:14:0.500:2	0/1:0,3:32:3:1.00:2	0/1:27,12:33:39:0.308:2	0/1:7,9:32:16:0.563:2	0/1:14,25:33:39:0.641:2	./.	0/1:14,27:32:41:0.659:2	0/1:0,45:33:45:1.00:2	0/1:17,14:33:31:0.452:2	./.
chr12	80935345	rs6539524	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,17:33:43:0.395:2	0/1:8,8:32:16:0.500:2	./.	0/1:19,16:32:35:0.457:2	0/1:8,9:33:17:0.529:2	0/1:21,13:32:34:0.382:2	0/1:0,20:33:20:1.00:2	0/1:22,28:33:50:0.560:2	./.	0/1:29,16:32:45:0.356:2	0/1:1,40:32:41:0.976:2
chr12	80935365	rs61729275	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,13:31:26:0.500:2	0/1:22,16:30:38:0.421:2	./.	./.	./.	./.	0/1:27,27:33:54:0.500:2
chr12	80936026	rs17713202	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:25,29:33:54:0.537:2	0/1:24,18:33:42:0.429:2	./.	0/1:35,30:33:65:0.462:2	./.	./.	0/1:18,24:33:42:0.571:2	0/1:36,18:33:54:0.333:2	./.	0/1:39,36:33:75:0.480:2	0/1:33,44:33:77:0.571:2
chr12	80936082	rs11114503	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,28:34:57:0.491:2	0/1:22,21:33:43:0.488:2	./.	0/1:33,54:32:87:0.621:2	0/1:20,13:33:33:0.394:2	0/1:26,39:32:65:0.600:2	0/1:1,42:33:43:0.977:2	0/1:46,37:33:83:0.446:2	./.	0/1:30,43:33:73:0.589:2	0/1:0,75:33:75:1.00:2
chr12	81007527	rs7963963	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,49:32:99:0.495:2	0/1:77,62:33:139:0.446:2
chr12	81043361	rs1528289	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,2:35:6:0.333:2	./.	./.	./.	./.	./.	./.	0/1:54,13:32:67:0.194:2	./.
chr12	81046562	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:33:54:0.074:2	./.
chr12	81329536	rs2682818	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:32:80:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,71:32:71:1.00:2	0/1:1,84:31:85:0.988:2	0/1:0,73:32:73:1.00:2	0/1:51,52:32:103:0.505:2	0/1:0,73:33:73:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,104:32:104:1.00:2
chr12	81503410	rs139584882	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,81:29:160:0.506:2	0/1:56,38:29:94:0.404:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	81528625	rs61745251	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,38:31:82:0.463:2	./.
chr12	81610702	rs61742651	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,21:31:50:0.420:2	./.	./.	./.	./.
chr12	81627238	rs1921038	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,7:31:16:0.438:2	./.	0/1:40,25:31:65:0.385:2	./.	./.	./.	./.	./.	./.
chr12	81657041	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:33:169:0.024:2	./.
chr12	81660798	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:32:114:0.035:2
chr12	81769581	rs10862301	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,9:30:25:0.360:2	0/1:109,80:30:189:0.423:2	./.	./.	./.	0/1:192,6:29:198:0.030:2	./.	0/1:76,69:31:145:0.476:2	0/1:105,91:30:196:0.464:2
chr12	81833745	rs2272083	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:31:8:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	81851600	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,4:34:43:0.093:2	./.	./.	./.	./.	./.	./.	./.
chr12	82752037	rs79245219	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,32:31:70:0.457:2	./.	./.	0/1:65,60:30:125:0.480:2	./.	./.	./.	./.
chr12	82752543	rs112592060	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,48:32:80:0.600:2	0/1:20,31:31:51:0.608:2	./.	./.	./.	0/1:81,51:32:132:0.386:2	./.	./.	./.	./.	0/1:50,32:32:82:0.390:2
chr12	82752559	rs113882703	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,45:30:79:0.570:2	0/1:18,29:29:47:0.617:2	./.	./.	./.	0/1:81,48:30:129:0.372:2	./.	./.	./.	./.	0/1:52,33:29:85:0.388:2
chr12	82780676	rs56337649	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,29:33:62:0.468:2	./.	./.	0/1:31,12:34:43:0.279:2	./.	./.	./.	./.
chr12	82783668	rs10778908	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,116:32:116:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,22:31:22:1.00:2	0/1:83,76:31:159:0.478:2	0/1:0,111:30:111:1.00:2	0/1:0,128:30:128:1.00:2	0/1:89,64:31:153:0.418:2	0/1:0,181:31:181:1.00:2	0/1:0,172:32:172:1.00:2	0/1:0,129:31:129:1.00:2	0/1:0,174:32:174:1.00:2
chr12	82783674	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,6:32:182:0.033:2	./.	./.	./.
chr12	82792666	rs10506872	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,19:32:36:0.528:2	0/1:15,15:33:30:0.500:2	./.	./.	./.	0/1:25,19:32:44:0.432:2	./.	./.	./.	./.	0/1:42,27:33:69:0.391:2
chr12	82792787	rs4296098	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:32:19:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,6:31:6:1.00:2	0/1:8,10:31:18:0.556:2	0/1:0,21:31:21:1.00:2	0/1:0,34:31:34:1.00:2	0/1:7,8:32:15:0.533:2	0/1:0,25:32:25:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,26:31:26:1.00:2
chr12	82792942	rs10506873	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,39:30:75:0.520:2	0/1:17,20:28:37:0.541:2	./.	./.	./.	0/1:42,21:30:63:0.333:2	./.	./.	./.	./.	0/1:51,20:29:71:0.282:2
chr12	83251120	rs200268500	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,9:15:86:0.105:2	./.	./.	./.
chr12	85264348	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.	./.
chr12	85277561	rs17183577	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,18:30:58:0.310:2	./.	0/1:23,26:31:49:0.531:2	./.	./.	./.	0/1:74,49:32:123:0.398:2
chr12	85277608	rs17183612	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,27:30:57:0.474:2	./.	0/1:27,18:28:45:0.400:2	./.	./.	./.	0/1:0,98:31:98:1.00:2
chr12	85432040	rs7312075	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,42:31:96:0.447:2	./.	./.	0/1:26,25:33:51:0.490:2	./.	./.
chr12	85438499	rs3765044	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,24:30:37:0.649:2	0/1:149,51:29:200:0.255:2	0/1:51,34:30:85:0.400:2	0/1:100,68:30:168:0.405:2	./.	./.	0/1:1,116:31:117:0.991:2	0/1:74,50:31:124:0.403:2	./.
chr12	85449465	rs7974418	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,77:32:78:0.987:2	0/1:0,40:32:40:1.00:2	0/1:7,7:32:14:0.500:2	0/1:99,30:30:129:0.233:2	0/1:0,50:31:50:1.00:2	0/1:47,40:30:87:0.460:2	0/1:0,49:32:49:1.00:2	0/1:42,48:31:90:0.533:2	0/1:2,68:32:70:0.971:2	0/1:47,24:32:71:0.338:2	0/1:89,69:32:158:0.437:2
chr12	85459134	rs140901570	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,37:30:103:0.359:2	./.	./.	./.	./.	./.	./.	./.
chr12	85466723	rs17012533	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:29:7:0.429:2	0/1:91,30:31:121:0.248:2	0/1:25,26:30:51:0.510:2	0/1:43,24:30:67:0.358:2	./.	./.	0/1:0,57:32:57:1.00:2	0/1:30,35:31:65:0.538:2	./.
chr12	85521611	rs181317257	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,33:32:64:0.516:2	./.	./.	./.	./.	./.
chr12	85531684	rs61740224	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	86198594	rs11831336	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,96:32:189:0.511:2	0/1:91,94:33:185:0.508:2
chr12	86198885	rs184264222	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,31:32:83:0.373:2	./.	./.	./.
chr12	86198935	rs7397266	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,24:31:66:0.364:2	0/1:64,49:32:113:0.434:2
chr12	86268179	rs1800832	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,27:32:71:0.380:2	0/1:36,36:34:72:0.500:2	./.	./.
chr12	86373221	rs17855890	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,41:33:67:0.612:2	./.	./.	./.	0/1:47,31:32:78:0.397:2	0/1:49,45:33:94:0.479:2	./.	./.
chr12	86373267	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,26:30:54:0.481:2	./.	./.	./.	./.	./.
chr12	88379788	rs11104703	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,78:32:160:0.491:2	./.
chr12	88380094	rs10777084	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,10:31:22:0.455:2	0/1:7,9:30:16:0.563:2	0/1:19,9:30:28:0.321:2	./.	0/1:13,15:31:28:0.536:2	./.
chr12	88390225	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:31:132:0.031:2	./.	./.
chr12	88429465	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,5:31:68:0.074:2
chr12	88440676	rs9262	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,88:33:88:1.00:2	0/1:0,47:32:47:1.00:2	./.	./.	./.	0/1:69,46:32:115:0.400:2	0/1:62,42:32:104:0.404:2	0/1:92,51:33:143:0.357:2	0/1:79,82:34:161:0.509:2	0/1:0,93:33:93:1.00:2	0/1:1,120:34:121:0.992:2
chr12	88444142	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:32:48:0.083:2	./.	./.	./.	./.	./.
chr12	88472911	rs117370446	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,48:32:98:0.490:2	./.	./.
chr12	88481632	rs117122459	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,45:32:70:0.643:2	./.	./.	./.	./.
chr12	88486522	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:32:185:0.022:2	./.
chr12	88500847	rs11104738	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,9:29:17:0.529:2	./.	./.	./.	./.
chr12	88505078	rs2468255	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,145:29:145:1.00:2	0/1:1,81:29:82:0.988:2	0/1:9,9:30:18:0.500:2	0/1:0,175:30:175:1.00:2	./.	0/1:98,96:29:194:0.495:2	0/1:2,91:30:93:0.978:2	0/1:0,138:30:138:1.00:2	0/1:110,78:30:188:0.415:2	0/1:0,145:30:145:1.00:2	0/1:2,181:31:183:0.989:2
chr12	88505633	rs45465996	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,24:32:41:0.585:2	0/1:17,4:32:21:0.190:2	./.	./.	./.	./.	./.	./.	0/1:26,21:33:47:0.447:2	./.	0/1:34,28:33:62:0.452:2
chr12	88532978	rs190383141	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,30:30:65:0.462:2	./.	./.	./.	./.	./.
chr12	88547277	rs2468230	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:33:39:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,77:33:77:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,78:33:78:1.00:2	0/1:0,60:33:60:1.00:2	0/1:0,62:32:62:1.00:2
chr12	88554483	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:31:168:0.024:2	./.	./.	./.	./.	./.
chr12	88560194	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:31:159:0.025:2
chr12	89743223	rs704075	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:32:94:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,131:32:131:1.00:2	0/1:0,114:31:114:1.00:2	0/1:0,130:31:130:1.00:2	0/1:0,116:31:116:1.00:2	0/1:0,138:32:138:1.00:2	0/1:0,152:32:152:1.00:2	0/1:0,95:31:95:1.00:2	0/1:0,135:31:135:1.00:2
chr12	89744773	rs770087	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,10:26:18:0.556:2	./.	./.	0/1:5,9:27:14:0.643:2	./.	./.	./.	0/1:0,16:25:16:1.00:2
chr12	89745477	rs2279574	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:30:8:1.00:2	0/1:43,36:29:79:0.456:2	0/1:0,98:30:98:1.00:2	0/1:34,42:30:76:0.553:2	0/1:39,64:31:103:0.621:2	0/1:42,54:30:96:0.563:2	0/1:0,45:30:45:1.00:2	0/1:39,26:30:65:0.400:2	./.
chr12	89745557	rs61734372	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	89853408	rs4842658	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,11:32:23:0.478:2	0/1:6,5:33:11:0.455:2	./.	0/1:0,18:32:18:1.00:2	0/1:0,13:29:13:1.00:2	0/1:15,8:31:23:0.348:2	0/1:0,15:31:15:1.00:2	0/1:0,19:32:19:1.00:2	0/1:1,18:33:19:0.947:2	0/1:0,6:31:6:1.00:2	0/1:11,10:31:21:0.476:2
chr12	89885848	rs76216585	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,16:32:55:0.291:2	./.	./.	./.
chr12	89916811	rs2230283	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,13:32:28:0.464:2	0/1:15,15:31:30:0.500:2	./.	0/1:0,26:31:26:1.00:2	./.	0/1:0,42:32:42:1.00:2	0/1:16,14:31:30:0.467:2	./.
chr12	89917037	rs2230282	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:14,14:32:28:0.500:2	0/1:14,7:32:21:0.333:2	./.	0/1:20,13:31:33:0.394:2	./.	./.	./.	0/1:0,27:32:27:1.00:2	./.	0/1:24,9:32:33:0.273:2	./.
chr12	89917518	rs2230281	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,33:32:65:0.508:2	0/1:28,18:32:46:0.391:2	./.	0/1:1,64:32:65:0.985:2	0/1:0,38:31:38:1.00:2	0/1:25,22:32:47:0.468:2	0/1:0,46:32:46:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,65:33:65:1.00:2	0/1:0,50:32:50:1.00:2	./.
chr12	89919638	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,5:27:10:0.500:2	./.	./.	./.	./.	./.
chr12	89985004	rs61736878	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,23:31:49:0.469:2	./.	./.	./.	./.	./.
chr12	90028901	rs1050395	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:54,55:33:109:0.505:2	0/1:21,18:32:39:0.462:2	./.	0/1:57,56:33:113:0.496:2	0/1:49,48:32:97:0.495:2	./.	./.	./.	./.	0/1:51,49:33:100:0.490:2	./.
chr12	91347643	rs78240650	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,48:30:107:0.449:2	./.	./.	./.	./.	./.
chr12	91347881	rs78693339	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,13:32:30:0.433:2	./.	./.	./.	./.	./.
chr12	91347999	rs115451948	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,7:30:25:0.280:2	./.	./.	./.	./.	./.
chr12	91348520	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,20:31:68:0.294:2	0/1:28,22:31:50:0.440:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	91348556	rs117919138	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,88:31:173:0.512:2	./.	./.	./.	./.	./.	./.
chr12	91348704	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:32:150:0.027:2
chr12	91348786	rs3803099	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,37:31:72:0.514:2	0/1:14,15:31:29:0.517:2	0/1:0,6:29:6:1.00:2	0/1:2,83:30:85:0.976:2	0/1:1,78:30:79:0.987:2	./.	0/1:43,45:30:88:0.511:2	./.	0/1:0,69:32:69:1.00:2	0/1:0,65:30:65:1.00:2	0/1:34,31:31:65:0.477:2
chr12	91348838	rs115628025	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,11:30:24:0.458:2	./.	./.	./.	./.	./.
chr12	91396247	rs76171854	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,51:31:100:0.510:2	./.	./.	./.	./.	./.
chr12	91445172	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,4:32:91:0.044:2	./.	./.	./.	./.	./.	./.	./.
chr12	91449984	rs12320366	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,27:33:58:0.466:2	0/1:19,7:33:26:0.269:2	./.	./.	./.	0/1:36,50:32:86:0.581:2	0/1:44,45:32:89:0.506:2	0/1:51,52:32:103:0.505:2	./.	./.	0/1:39,22:33:61:0.361:2
chr12	91449990	rs2735333	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,30:31:61:0.492:2	0/1:6,19:31:25:0.760:2	./.	0/1:0,62:30:62:1.00:2	0/1:0,108:30:108:1.00:2	./.	0/1:45,41:30:86:0.477:2	./.	0/1:0,88:32:88:1.00:2	0/1:1,72:31:73:0.986:2	0/1:25,37:31:62:0.597:2
chr12	91502161	rs147975710	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,47:29:103:0.456:2	./.	./.
chr12	92818482	rs12580153	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:11,16:30:27:0.593:2	0/1:14,7:31:21:0.333:2	./.	./.	0/1:23,4:29:27:0.148:2	./.	./.	0/1:18,14:29:32:0.438:2	./.	./.	./.
chr12	92818786	rs1515565	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,35:33:66:0.530:2	0/1:28,28:32:56:0.500:2	./.	0/1:2,72:33:74:0.973:2	0/1:25,16:32:41:0.390:2	./.	./.	0/1:24,30:32:54:0.556:2	0/1:52,47:33:99:0.475:2	./.	./.
chr12	93139348	rs17790310	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:26,23:32:49:0.469:2	0/1:17,17:32:34:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:22,32:33:54:0.593:2	./.
chr12	93147901	rs74784157	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,60:31:106:0.566:2	./.	./.	0/1:55,56:31:111:0.505:2	./.	./.	./.
chr12	93147907	rs9669519	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,91:32:91:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,22:31:22:1.00:2	./.	0/1:45,61:32:106:0.575:2	./.	0/1:114,8:32:122:0.066:2	0/1:57,54:33:111:0.486:2	./.	0/1:0,92:32:92:1.00:2	0/1:49,58:33:107:0.542:2
chr12	93150102	rs924326	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,182:30:182:1.00:2	0/1:0,118:29:118:1.00:2	0/1:0,34:30:34:1.00:2	./.	0/1:69,55:31:124:0.444:2	./.	./.	0/1:122,73:30:195:0.374:2	./.	0/1:1,171:30:172:0.994:2	0/1:109,84:30:193:0.435:2
chr12	93155535	rs1504907	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:32:44:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,46:32:46:1.00:2	0/1:24,13:31:37:0.351:2	./.	0/1:0,32:32:32:1.00:2	0/1:0,49:32:49:1.00:2	0/1:51,39:33:90:0.433:2	0/1:0,38:33:38:1.00:2	0/1:0,95:32:95:1.00:2
chr12	93181768	rs61756482	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,51:32:105:0.486:2	./.	./.	./.	./.
chr12	93192813	rs200343917	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,78:32:152:0.513:2	0/1:44,38:31:82:0.463:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	93196422	rs10745623	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,32:31:32:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,10:34:10:1.00:2	./.	0/1:0,38:32:38:1.00:2	0/1:19,12:31:31:0.387:2	0/1:9,26:30:35:0.743:2	0/1:18,19:32:37:0.514:2	0/1:25,13:32:38:0.342:2	0/1:1,47:32:48:0.979:2	0/1:25,29:33:54:0.537:2
chr12	93202801	rs7970286	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:43,37:32:80:0.463:2	0/1:20,14:32:34:0.412:2	./.	./.	./.	./.	./.	./.	./.	0/1:63,39:32:102:0.382:2	0/1:52,45:31:97:0.464:2
chr12	93258665	rs17194451	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,80:29:80:1.00:2	./.	./.	0/1:58,33:30:91:0.363:2	0/1:50,47:30:97:0.485:2	0/1:56,42:31:98:0.429:2	./.	0/1:32,37:30:69:0.536:2
chr12	93804551	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.	./.
chr12	93804919	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:167,16:33:183:0.087:2	0/1:96,7:29:103:0.068:2	./.	./.	0/1:155,5:34:160:0.031:2	./.	./.	./.
chr12	93804920	.	G	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:165,17:32:182:0.093:2	0/1:96,5:32:101:0.050:2	./.	./.	0/1:156,5:33:161:0.031:2	./.	./.	./.
chr12	93804938	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:157,8:32:165:0.048:2	./.	./.	./.	./.	./.	./.	./.
chr12	93895014	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,4:32:73:0.055:2	./.	./.	./.	./.	./.	./.	./.
chr12	94243853	rs56944668	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,28:30:76:0.368:2	0/1:41,38:30:79:0.481:2	./.	./.	./.	0/1:32,37:30:69:0.536:2	0/1:33,28:31:61:0.459:2
chr12	94543506	rs2230754	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:6,6:30:12:0.500:2	0/1:0,4:29:4:1.00:2	./.	0/1:18,10:22:28:0.357:2	./.	0/1:12,6:29:18:0.333:2	./.	./.	0/1:10,10:30:20:0.500:2	./.	./.
chr12	94634267	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2
chr12	94642023	rs2230756	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	94645255	rs2230757	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:90,98:29:188:0.521:2	0/1:91,43:29:134:0.321:2	./.	0/1:114,84:30:199:0.424:2	./.	./.	0/1:5,180:29:185:0.973:2	0/1:99,92:29:191:0.482:2	./.	0/1:0,185:29:185:1.00:2	./.
chr12	94658982	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,6:20:64:0.094:2	./.	./.	./.
chr12	94673277	rs2230760	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,11:33:34:0.324:2	./.	./.	./.
chr12	94769758	rs4761611	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:36,12:33:48:0.250:2	0/1:14,7:32:21:0.333:2	0/1:0,16:32:16:1.00:2	./.	0/1:11,27:32:38:0.711:2	0/1:29,14:33:43:0.326:2	0/1:0,39:33:39:1.00:2	0/1:0,69:33:69:1.00:2	0/1:32,30:34:62:0.484:2	0/1:0,58:33:58:1.00:2	0/1:3,71:32:75:0.959:2
chr12	94769769	rs74340001	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,14:32:44:0.318:2	0/1:14,6:32:20:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	94772742	rs2271979	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	./.	./.	./.	./.	0/1:35,35:33:70:0.500:2	./.	./.
chr12	94972290	rs2270893	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:32:42:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,9:32:9:1.00:2	0/1:32,43:33:75:0.573:2	0/1:0,83:31:83:1.00:2	./.	0/1:34,39:32:73:0.534:2	0/1:0,84:32:84:1.00:2	./.	./.	0/1:0,54:32:54:1.00:2
chr12	94975799	rs3747553	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:32:77:1.00:2	0/1:2,51:31:53:0.962:2	0/1:0,10:31:10:1.00:2	0/1:56,45:31:101:0.446:2	0/1:2,52:31:54:0.963:2	./.	0/1:40,32:31:72:0.444:2	0/1:0,82:31:82:1.00:2	0/1:45,50:33:95:0.526:2	./.	0/1:1,93:31:94:0.989:2
chr12	94975880	rs78957035	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,28:33:56:0.500:2	./.	./.
chr12	94976084	rs3747552	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,114:29:114:1.00:2	0/1:1,55:29:56:0.982:2	0/1:0,15:29:15:1.00:2	0/1:74,72:29:146:0.493:2	0/1:0,148:28:148:1.00:2	./.	0/1:84,67:29:151:0.444:2	0/1:1,167:29:168:0.994:2	0/1:72,65:29:137:0.474:2	./.	0/1:0,151:28:151:1.00:2
chr12	94976159	rs3747551	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:31:56:1.00:2	0/1:2,34:32:36:0.944:2	0/1:0,6:31:6:1.00:2	0/1:49,41:33:90:0.456:2	0/1:21,17:32:38:0.447:2	./.	0/1:30,23:33:53:0.434:2	0/1:47,33:32:80:0.413:2	./.	./.	0/1:1,84:32:85:0.988:2
chr12	95044161	rs1274523	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	0/1:0,4:32:4:1.00:2	./.	./.	0/1:0,2:33:2:1.00:2	./.	0/1:0,4:32:4:1.00:2	./.
chr12	95228286	rs2289030	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,22:33:41:0.537:2	0/1:19,18:33:37:0.486:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	95500727	rs7138545	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,91:32:91:1.00:2	0/1:0,76:32:76:1.00:2	0/1:7,9:32:16:0.563:2	./.	0/1:1,89:31:90:0.989:2	./.	0/1:84,77:32:161:0.478:2	0/1:3,161:32:164:0.982:2	./.	0/1:69,55:32:124:0.444:2	0/1:0,142:33:142:1.00:2
chr12	95502303	rs11107896	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,64:31:164:0.390:2	./.	./.	0/1:105,85:32:190:0.447:2	./.	./.	./.	./.
chr12	95528569	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:29:53:0.075:2	./.	./.	./.	./.
chr12	95531442	rs11829776	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,7:32:27:0.259:2	./.	./.	0/1:26,13:33:39:0.333:2	./.	./.	0/1:26,33:34:59:0.559:2
chr12	95535302	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,6:32:80:0.075:2	./.	./.	./.	./.	./.	./.	./.
chr12	95602672	rs2306884	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,94:32:189:0.497:2	./.	./.	./.
chr12	95602780	rs766404	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,69:31:178:0.388:2	./.	./.	./.
chr12	95604290	rs10507047	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,14:31:37:0.378:2	./.	./.	0/1:14,10:29:24:0.417:2	./.	./.	./.	./.
chr12	95660182	rs17855933	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,90:30:191:0.471:2	./.
chr12	95681554	rs12424550	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:31:11:0.455:2	./.	./.	./.	./.	./.	0/1:29,15:32:44:0.341:2	./.	0/1:29,25:31:54:0.463:2
chr12	95694111	rs17855934	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,17:29:50:0.340:2	./.
chr12	95694394	rs14121	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:32:4:1.00:2	0/1:0,45:31:45:1.00:2	./.	0/1:19,21:30:40:0.525:2	0/1:19,17:31:36:0.472:2	0/1:30,22:31:52:0.423:2	0/1:0,32:31:32:1.00:2	0/1:0,16:31:16:1.00:2	0/1:12,12:32:24:0.500:2
chr12	95906603	rs3794261	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,27:32:49:0.551:2	0/1:19,19:33:38:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	95927037	rs3812814	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,26:31:66:0.394:2
chr12	95927762	rs3812813	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:95,88:30:183:0.481:2	0/1:53,47:30:101:0.470:2	0/1:0,17:30:17:1.00:2	./.	./.	0/1:0,179:29:180:1.00:2	0/1:89,108:30:197:0.548:2	./.	0/1:101,75:30:176:0.426:2	./.	0/1:98,88:29:186:0.473:2
chr12	96077312	rs17851048	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,52:32:96:0.542:2	./.	./.	0/1:28,24:32:52:0.462:2	0/1:33,26:32:59:0.441:2
chr12	96131895	rs17288108	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,92:32:93:0.989:2	0/1:37,22:31:59:0.373:2	./.	./.	./.	./.	./.	./.
chr12	96252833	rs17024783	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,29:32:66:0.439:2	./.	./.	./.
chr12	96260947	rs7960706	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,80:33:83:0.964:2	0/1:0,40:33:40:1.00:2	./.	./.	0/1:56,33:32:89:0.371:2	0/1:57,49:32:106:0.462:2	0/1:61,33:32:94:0.351:2	0/1:61,46:32:107:0.430:2	0/1:2,92:33:94:0.979:2	./.	0/1:99,63:33:162:0.389:2
chr12	96266035	rs2117914	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,48:31:104:0.462:2	./.	./.	./.	./.	./.
chr12	96284650	rs6538681	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,48:31:49:0.980:2	0/1:0,42:30:42:1.00:2	0/1:2,7:30:9:0.778:2	0/1:0,35:30:35:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,36:31:36:1.00:2	./.	0/1:0,65:31:65:1.00:2	./.	0/1:24,22:31:46:0.478:2
chr12	96288860	rs10859974	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,35:31:86:0.407:2	./.	./.	./.	./.	./.
chr12	96292170	rs75959092	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:113,78:33:191:0.408:2	0/1:94,103:32:197:0.523:2	./.	./.	./.	0/1:124,72:34:196:0.367:2	./.	./.
chr12	96312686	rs12368787	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,30:31:93:0.323:2	0/1:27,18:32:45:0.400:2	./.	./.	./.	0/1:55,28:32:83:0.337:2	./.	./.
chr12	96337183	rs7955450	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.
chr12	96346594	rs1982138	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:2,3:32:5:0.600:2	./.	0/1:12,5:33:17:0.294:2	0/1:5,4:32:9:0.444:2	./.	./.	./.	0/1:0,7:33:7:1.00:2	./.	0/1:0,16:33:16:1.00:2
chr12	96368087	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:31:107:0.037:2	./.	./.	./.	./.
chr12	96374563	rs6538694	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,68:33:71:0.958:2	0/1:0,41:32:41:1.00:2	0/1:0,13:33:13:1.00:2	0/1:49,33:32:82:0.402:2	0/1:43,15:30:58:0.259:2	0/1:0,76:32:76:1.00:2	0/1:0,52:33:52:1.00:2	0/1:2,65:32:67:0.970:2	0/1:56,51:34:107:0.477:2	0/1:0,66:33:66:1.00:2	0/1:70,44:32:114:0.386:2
chr12	96374614	rs7297245	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,51:32:53:0.962:2	0/1:1,40:32:41:0.976:2	0/1:0,14:31:14:1.00:2	0/1:46,21:28:67:0.313:2	0/1:43,11:31:54:0.204:2	0/1:0,71:30:71:1.00:2	0/1:0,38:31:38:1.00:2	0/1:1,75:31:76:0.987:2	0/1:47,46:32:93:0.495:2	0/1:0,57:32:57:1.00:2	0/1:74,44:31:118:0.373:2
chr12	96380975	rs11108364	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,47:30:98:0.480:2	./.	./.	./.	./.	0/1:62,31:30:94:0.333:2
chr12	96384249	rs36014288	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,80:30:86:0.930:2	0/1:4,50:29:54:0.926:2	./.	./.	./.	0/1:79,75:30:155:0.487:2	./.	0/1:81,71:29:152:0.467:2	0/1:61,73:31:134:0.545:2	./.	./.
chr12	96387621	rs2302629	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,33:33:33:1.00:2	0/1:0,5:33:5:1.00:2	./.	0/1:14,26:32:40:0.650:2	0/1:9,3:31:12:0.250:2	0/1:0,21:32:21:1.00:2	0/1:9,10:30:19:0.526:2	0/1:24,12:31:36:0.333:2	0/1:1,35:33:36:0.972:2	./.	0/1:1,36:32:37:0.973:2
chr12	96387765	rs2302628	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:29,27:33:56:0.482:2	0/1:13,13:33:26:0.500:2	./.	./.	./.	./.	./.	0/1:36,28:31:64:0.438:2	./.	./.	./.
chr12	96411397	rs12049939	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,23:31:41:0.561:2	0/1:8,9:33:17:0.529:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	96429226	rs2228060	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,65:30:142:0.458:2	./.	./.	./.	./.	./.
chr12	97045481	rs74447642	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,9:30:19:0.474:2	0/1:73,61:30:134:0.455:2	./.	./.	./.	./.	0/1:100,63:32:163:0.387:2	./.	./.
chr12	97098549	rs11108643	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,99:32:100:0.990:2	0/1:0,52:32:52:1.00:2	0/1:6,5:32:11:0.455:2	0/1:44,42:32:86:0.488:2	0/1:39,18:32:57:0.316:2	./.	0/1:0,61:33:62:1.00:2	0/1:0,88:32:88:1.00:2	0/1:62,56:33:118:0.475:2	0/1:39,63:32:102:0.618:2	0/1:0,129:33:129:1.00:2
chr12	97102578	rs7968231	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:32:62:1.00:2	0/1:0,27:31:27:1.00:2	0/1:3,3:31:6:0.500:2	0/1:25,18:31:43:0.419:2	0/1:0,27:31:27:1.00:2	0/1:29,19:30:48:0.396:2	0/1:0,31:31:31:1.00:2	0/1:1,57:31:59:0.983:2	0/1:37,22:31:59:0.373:2	0/1:20,11:31:31:0.355:2	0/1:0,64:31:64:1.00:2
chr12	97114231	rs10860073	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,62:31:116:0.534:2	./.	./.	./.
chr12	97133737	rs17326839	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:5,5:29:10:0.500:2	./.	./.	./.	./.	./.	0/1:2,4:27:6:0.667:2	./.	./.	./.	0/1:0,13:28:13:1.00:2
chr12	97133803	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,4:33:20:0.200:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	97136218	rs7978894	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:16,17:31:33:0.515:2	0/1:7,13:32:20:0.650:2	./.	./.	./.	./.	0/1:10,12:33:22:0.545:2	0/1:0,32:32:32:1.00:2	./.	./.	0/1:0,27:32:27:1.00:2
chr12	97136239	rs1990828	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,32:32:33:0.970:2	0/1:0,20:32:20:1.00:2	./.	0/1:30,15:31:45:0.333:2	0/1:0,33:30:33:1.00:2	0/1:14,13:31:27:0.481:2	0/1:0,29:31:29:1.00:2	0/1:0,47:31:47:1.00:2	0/1:23,21:32:44:0.477:2	0/1:15,22:32:37:0.595:2	0/1:0,31:32:31:1.00:2
chr12	97137903	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:28:81:0.049:2	./.
chr12	97147607	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:32:45:0.089:2	./.
chr12	97150263	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,11:33:21:0.524:2	./.	./.	./.	./.	./.	./.	./.
chr12	97158930	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,54:31:118:0.458:2	./.	./.	./.	./.	./.
chr12	97158987	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,47:32:105:0.448:2	./.	./.	./.	./.	./.
chr12	98927830	rs17459334	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,31:31:76:0.408:2	./.	./.	./.	./.	0/1:43,31:32:74:0.419:2	./.
chr12	98940152	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,4:33:75:0.053:2	./.	./.	./.	./.	./.	./.	./.
chr12	98940206	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,4:29:78:0.051:2	./.	./.	./.	./.	./.	./.	./.
chr12	98940218	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.	./.	./.	./.
chr12	99007623	rs1048906	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:61,49:32:110:0.445:2	0/1:41,35:33:76:0.461:2	0/1:4,9:32:13:0.692:2	./.	./.	0/1:58,49:31:107:0.458:2	0/1:57,44:32:101:0.436:2	0/1:62,61:32:123:0.496:2	./.	./.	./.
chr12	99007874	rs140515964	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,24:32:55:0.436:2	./.	./.	./.	./.	./.
chr12	99007922	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,4:31:104:0.038:2	./.	./.	./.	./.	./.	./.
chr12	99020125	rs61756485	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,51:32:109:0.468:2	./.	./.	./.	./.	./.
chr12	99043291	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:32:152:0.026:2	./.	./.	./.	./.
chr12	99064783	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:32:124:0.032:2	./.	./.
chr12	99071283	rs73142307	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:30:9:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	99093226	rs117235991	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,14:31:35:0.400:2	./.	./.	./.	./.
chr12	99100374	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:33:169:0.024:2	./.	./.	./.
chr12	99139559	rs61932058	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,56:32:103:0.544:2	./.	./.	./.	./.
chr12	99194829	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:32:179:0.022:2
chr12	99446977	rs80197475	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,42:32:77:0.545:2	./.
chr12	99447016	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:34:67:0.060:2	./.
chr12	99640428	rs3751323	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:3,107:30:110:0.973:2	0/1:0,52:28:52:1.00:2	0/1:5,3:27:8:0.375:2	./.	./.	0/1:53,42:29:95:0.442:2	0/1:36,25:30:61:0.410:2	./.	./.	0/1:42,40:29:83:0.488:2	0/1:1,134:30:135:0.993:2
chr12	99640557	rs1552759	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,70:28:70:1.00:2	0/1:0,27:29:27:1.00:2	./.	0/1:29,18:30:47:0.383:2	0/1:0,31:28:31:1.00:2	0/1:2,53:27:55:0.964:2	0/1:0,47:28:47:1.00:2	./.	0/1:28,25:30:53:0.472:2	0/1:23,25:29:48:0.521:2	0/1:1,55:27:56:0.982:2
chr12	99837570	rs148678454	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,84:31:84:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr12	100042040	rs11109968	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,5:33:19:0.263:2	./.	0/1:40,17:32:57:0.298:2	./.	0/1:45,34:32:80:0.430:2	./.	./.	0/1:40,46:32:86:0.535:2	./.
chr12	100042163	rs11109969	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:31:12:0.500:2	./.	0/1:57,74:32:131:0.565:2	./.	0/1:76,52:32:128:0.406:2	./.	./.	0/1:50,31:33:81:0.383:2	./.
chr12	100042368	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,40:31:110:0.364:2	./.	./.	./.
chr12	100444984	rs7296162	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,20:32:65:0.308:2
chr12	100452027	rs60592197	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,18:32:45:0.400:2	./.	0/1:20,33:33:53:0.623:2	./.	./.
chr12	100453167	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,19:33:47:0.404:2	./.	./.	./.	./.
chr12	100476901	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:32:87:0.046:2	./.	./.	./.	./.	./.
chr12	100550996	rs12370675	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,72:32:145:0.497:2	./.	0/1:52,35:33:87:0.402:2	./.	./.
chr12	100604073	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:33:69:0.058:2	./.	./.
chr12	100657464	rs7307415	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,16:30:50:0.320:2	./.	0/1:38,30:30:68:0.441:2	./.	./.
chr12	100708367	rs33968174	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,33:31:86:0.384:2	./.	./.	./.	./.	./.	./.
chr12	100709420	rs10860577	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,5:32:17:0.294:2	0/1:69,54:32:123:0.439:2	./.	0/1:73,59:31:132:0.447:2	./.	0/1:75,51:32:126:0.405:2	./.	./.	./.
chr12	100711697	rs56002815	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,47:31:86:0.547:2	./.	./.	./.	./.	./.	./.	./.
chr12	100720404	rs199548769	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:32:65:0.062:2	./.	./.	./.	./.	./.
chr12	100720459	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:32:114:0.035:2	./.	./.	./.	./.	./.
chr12	100720470	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:32:112:0.036:2	./.	./.	./.	./.	./.
chr12	100732327	rs10860580	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,23:31:48:0.479:2	./.	0/1:16,17:30:33:0.515:2	0/1:11,11:31:22:0.500:2	0/1:20,29:31:49:0.592:2	./.	./.	./.
chr12	100813826	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:31:29:0.138:2	./.	./.	./.	./.	./.
chr12	100995528	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:30:59:0.068:2	./.	./.	./.	./.
chr12	101017445	rs1469385	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,55:33:56:0.982:2	0/1:0,31:32:31:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,64:33:64:1.00:2	0/1:28,20:32:48:0.417:2	0/1:0,61:32:61:1.00:2	0/1:44,21:33:65:0.323:2	0/1:0,62:33:62:1.00:2	0/1:0,93:33:93:1.00:2	0/1:4,39:32:43:0.907:2	0/1:0,87:32:87:1.00:2
chr12	101018014	rs1045602	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,16:32:31:0.516:2	0/1:12,7:32:19:0.368:2	./.	0/1:0,20:31:20:1.00:2	0/1:5,8:31:13:0.615:2	./.	0/1:5,4:29:9:0.444:2	0/1:0,23:32:23:1.00:2	./.	0/1:0,9:32:9:1.00:2	0/1:0,34:33:34:1.00:2
chr12	101018161	rs1045603	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:29:15:0.400:2	./.	./.	0/1:6,9:30:15:0.600:2	0/1:20,16:30:36:0.444:2	./.	0/1:7,5:31:12:0.417:2	./.
chr12	101295602	rs34182255	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,55:30:135:0.407:2	0/1:91,86:30:177:0.486:2	./.	./.	./.
chr12	101336201	rs34162417	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,38:33:70:0.543:2	0/1:20,24:33:44:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	101437344	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:29:107:0.037:2	./.	./.	./.	./.
chr12	101505435	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:32:159:0.025:2	./.	./.	./.	./.	./.
chr12	101520689	rs1055734	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,60:30:135:0.444:2	0/1:83,97:29:180:0.539:2	./.	./.	0/1:94,67:30:161:0.416:2	./.	./.
chr12	101552075	rs2671444	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:31:17:1.00:2	0/1:0,16:31:16:1.00:2	./.	0/1:12,8:31:20:0.400:2	0/1:0,4:31:4:1.00:2	0/1:18,6:30:24:0.250:2	0/1:0,6:31:6:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,16:32:16:1.00:2	0/1:16,6:29:22:0.273:2	0/1:23,11:32:34:0.324:2
chr12	101560328	rs164365	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,57:30:123:0.463:2	./.	./.	./.	0/1:75,41:30:116:0.353:2	./.	./.	0/1:75,81:31:156:0.519:2
chr12	101561940	rs9634221	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,45:32:90:0.500:2
chr12	101587518	rs1709189	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,30:32:68:0.441:2	./.	./.	./.	0/1:50,42:30:92:0.457:2	./.	./.	0/1:46,29:32:75:0.387:2
chr12	101603619	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,4:30:19:0.211:2	./.	./.
chr12	101679658	rs78440807	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,35:32:80:0.438:2
chr12	101683929	rs703715	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,26:31:63:0.413:2	0/1:21,11:31:32:0.344:2	0/1:27,16:31:43:0.372:2	0/1:13,6:32:19:0.316:2	./.	0/1:24,12:30:37:0.333:2	0/1:0,26:31:26:1.00:2	./.
chr12	101685852	rs11110737	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:34:6:0.500:2	0/1:27,24:33:51:0.471:2	0/1:16,16:32:32:0.500:2	0/1:18,28:32:46:0.609:2	0/1:22,17:32:39:0.436:2	0/1:29,36:31:65:0.554:2	0/1:27,23:33:50:0.460:2	./.	0/1:23,26:34:49:0.531:2
chr12	101693534	rs4764643	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,24:33:77:0.312:2	0/1:35,21:33:56:0.375:2	0/1:3,5:33:8:0.625:2	0/1:37,41:32:78:0.526:2	0/1:16,21:32:39:0.568:2	0/1:31,37:32:68:0.544:2	0/1:38,38:32:76:0.500:2	0/1:43,40:32:83:0.482:2	0/1:52,51:34:104:0.495:2	./.	0/1:84,56:33:140:0.400:2
chr12	101693834	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:33:160:0.025:2	./.
chr12	101703546	rs139171605	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,43:31:98:0.439:2	./.	./.	./.	./.	./.
chr12	101732655	rs56265469	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:2,117:32:119:0.983:2	0/1:2,51:30:53:0.962:2	./.	./.	0/1:79,6:30:85:0.071:2	./.	./.	0/1:90,50:31:140:0.357:2	./.	./.	0/1:71,91:31:162:0.562:2
chr12	101750814	rs10082778	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:33:87:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,94:31:94:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,114:31:114:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,128:32:128:1.00:2	0/1:0,136:33:136:1.00:2	0/1:0,87:33:87:1.00:2	0/1:0,136:32:136:1.00:2
chr12	101759270	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,4:33:87:0.046:2	./.	./.	./.	./.	./.	./.
chr12	101776996	rs1061436	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:34:3:1.00:2	0/1:15,22:32:37:0.595:2	0/1:11,25:32:36:0.694:2	0/1:13,22:31:36:0.629:2	0/1:0,42:31:42:1.00:2	0/1:14,19:32:33:0.576:2	0/1:13,12:32:25:0.480:2	./.	0/1:15,22:32:37:0.595:2
chr12	101777396	rs139767850	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,43:32:97:0.443:2	./.	./.	./.	./.	./.
chr12	101880128	rs61748064	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,13:33:43:0.302:2	./.	./.	./.	./.	./.	./.	./.
chr12	102008276	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,24:34:34:0.706:2	./.	./.
chr12	102036305	rs2293468	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:32:8:0.750:2	./.	0/1:37,28:31:65:0.431:2	0/1:0,45:30:45:1.00:2	./.	0/1:1,59:31:60:0.983:2	./.	./.	./.
chr12	102045163	rs3817552	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,27:32:50:0.540:2	0/1:0,64:33:64:1.00:2	./.	0/1:3,86:32:91:0.966:2	./.	./.	./.
chr12	102064118	rs7139095	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:33:81:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,77:33:77:1.00:2	0/1:0,79:32:79:1.00:2	0/1:1,88:32:89:0.989:2	0/1:0,57:33:57:1.00:2	0/1:2,91:32:93:0.978:2	0/1:0,93:34:93:1.00:2	0/1:0,81:32:81:1.00:2	0/1:2,85:32:87:0.977:2
chr12	102069077	rs764291	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,11:29:17:0.647:2	./.	./.	./.	./.	./.	./.	./.	0/1:83,43:29:126:0.341:2
chr12	102108301	rs2066920	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:67,56:33:123:0.455:2	0/1:44,32:31:76:0.421:2	0/1:1,5:33:6:0.833:2	./.	./.	./.	0/1:38,45:32:83:0.542:2	0/1:48,64:32:112:0.571:2	./.	./.	./.
chr12	102108345	rs3205421	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,59:32:163:0.364:2	0/1:105,88:32:193:0.456:2	./.	./.	./.	0/1:88,107:33:195:0.549:2	./.
chr12	102117558	rs141024430	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,25:32:51:0.490:2
chr12	102117589	rs11082	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,14:33:36:0.389:2	0/1:14,7:32:21:0.333:2	./.	./.	0/1:14,9:31:23:0.391:2	0/1:23,20:32:43:0.465:2	0/1:17,8:31:25:0.320:2	0/1:12,15:31:27:0.556:2	./.	0/1:16,11:33:27:0.407:2	./.
chr12	102158763	rs10778148	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:90,86:31:176:0.489:2	0/1:44,47:30:91:0.516:2	0/1:13,9:31:22:0.409:2	./.	0/1:66,58:30:124:0.468:2	0/1:62,87:31:150:0.584:2	0/1:73,52:30:125:0.416:2	0/1:96,85:31:181:0.470:2	./.	0/1:94,94:30:188:0.500:2	./.
chr12	102158997	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:32:79:0.051:2	./.	./.	./.
chr12	102183825	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:33:84:0.048:2	./.
chr12	102224367	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:31:88:0.045:2	./.	./.
chr12	102224436	rs4764655	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:16,15:27:31:0.484:2	0/1:17,4:28:21:0.190:2	0/1:7,5:29:12:0.417:2	./.	./.	./.	0/1:66,64:28:130:0.492:2	0/1:61,59:28:120:0.492:2	./.	./.	./.
chr12	102455729	rs3751129	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,18:31:47:0.383:2	./.	./.	0/1:21,12:31:33:0.364:2	0/1:18,15:31:33:0.455:2	./.	./.
chr12	102494849	rs17438178	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:50,37:31:87:0.425:2	0/1:24,21:32:45:0.467:2	./.	./.	./.	./.	./.	0/1:45,32:32:77:0.416:2	./.	./.	./.
chr12	102576351	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,6:32:99:0.061:2
chr12	103237468	rs772897	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,41:33:89:0.466:2	0/1:23,27:33:50:0.540:2	0/1:0,16:32:16:1.00:2	0/1:0,125:32:125:1.00:2	0/1:0,100:33:100:1.00:2	0/1:0,93:32:93:1.00:2	0/1:2,110:33:112:0.982:2	0/1:0,113:32:113:1.00:2	0/1:86,71:33:157:0.452:2	0/1:1,79:33:80:0.988:2	0/1:0,98:33:98:1.00:2
chr12	103246700	rs1042503	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:30:7:0.429:2	0/1:39,35:30:74:0.473:2	0/1:21,37:29:58:0.638:2	0/1:35,22:29:57:0.386:2	0/1:28,33:30:61:0.541:2	./.	./.	./.	./.
chr12	103248924	rs1126758	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,40:32:91:0.440:2	0/1:36,19:32:55:0.345:2	0/1:13,8:31:21:0.381:2	0/1:62,43:31:105:0.410:2	0/1:59,33:31:92:0.359:2	0/1:52,47:30:99:0.475:2	0/1:65,43:32:108:0.398:2	0/1:0,105:31:105:1.00:2	0/1:76,56:32:132:0.424:2	0/1:2,82:31:84:0.976:2	0/1:0,107:32:107:1.00:2
chr12	103352649	rs731682	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,52:30:82:0.634:2	./.	./.	0/1:55,52:30:107:0.486:2	./.	0/1:28,33:31:61:0.541:2	./.	./.
chr12	103696182	rs79387839	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,35:30:74:0.473:2	./.	0/1:36,47:29:83:0.566:2	0/1:14,28:30:42:0.667:2	0/1:32,38:31:70:0.543:2	./.
chr12	103795425	rs117838745	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,57:31:99:0.576:2
chr12	103872172	rs10778257	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:31:62:1.00:2	0/1:0,42:29:42:1.00:2	0/1:2,11:29:13:0.846:2	0/1:41,33:29:74:0.446:2	0/1:44,22:29:66:0.333:2	0/1:0,78:29:78:1.00:2	0/1:29,16:28:45:0.356:2	0/1:38,58:29:96:0.604:2	0/1:70,52:29:122:0.426:2	0/1:3,70:30:73:0.959:2	./.
chr12	104048407	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:33:55:0.073:2	./.	./.	./.
chr12	104048446	rs149524008	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,37:32:83:0.446:2
chr12	104048454	rs1609860	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:37,30:31:67:0.448:2	0/1:27,12:32:39:0.308:2	./.	0/1:39,40:31:79:0.506:2	./.	0/1:45,32:31:77:0.416:2	0/1:34,28:32:62:0.452:2	./.	./.	./.	./.
chr12	104062457	.	T	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,6:16:23:0.261:2	./.	./.	0/1:40,13:13:53:0.245:2	0/1:63,18:16:81:0.222:2	0/1:34,13:17:47:0.277:2	0/1:71,17:14:88:0.193:2	0/1:61,18:17:79:0.228:2	0/1:54,10:19:64:0.156:2	./.	./.
chr12	104067812	rs11614418	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,21:32:43:0.488:2	0/1:11,13:33:24:0.542:2	./.	0/1:44,23:31:67:0.343:2	0/1:1,53:31:54:0.981:2	0/1:26,31:32:57:0.544:2	./.	0/1:52,33:32:85:0.388:2	./.	0/1:0,41:32:41:1.00:2	0/1:25,15:33:40:0.375:2
chr12	104069795	rs7973658	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:27:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	104086631	rs703651	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,85:32:154:0.552:2	0/1:52,40:32:92:0.435:2	0/1:4,19:32:23:0.826:2	0/1:98,78:31:176:0.443:2	0/1:0,163:31:163:1.00:2	0/1:91,102:31:193:0.528:2	0/1:100,96:31:197:0.490:2	0/1:1,191:31:192:0.995:2	./.	0/1:1,126:31:127:0.992:2	0/1:116,75:31:191:0.393:2
chr12	104092996	rs697210	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:62,51:33:114:0.451:2	0/1:45,55:33:100:0.550:2	0/1:0,22:32:22:1.00:2	./.	./.	./.	./.	0/1:97,71:32:168:0.423:2	0/1:81,73:33:154:0.474:2	0/1:96,60:32:156:0.385:2	0/1:85,80:33:165:0.485:2
chr12	104100617	rs697212	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,94:30:183:0.514:2	./.	0/1:113,70:30:183:0.383:2	0/1:105,92:32:197:0.467:2	0/1:109,79:31:188:0.420:2	0/1:98,85:32:183:0.464:2	0/1:0,175:31:175:1.00:2	0/1:0,186:31:186:1.00:2
chr12	104123911	rs10778281	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,34:32:34:1.00:2	0/1:0,25:31:25:1.00:2	./.	./.	./.	./.	./.	0/1:12,15:31:27:0.556:2	./.	./.	./.
chr12	104124018	rs17034433	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:14,12:34:26:0.462:2	0/1:11,9:32:20:0.450:2	./.	./.	./.	./.	./.	0/1:14,19:31:33:0.576:2	./.	./.	./.
chr12	104136289	rs35102665	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,93:31:189:0.492:2	./.	./.	./.	./.	./.	./.
chr12	104136316	rs2292688	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:92,95:31:187:0.508:2	./.	./.	./.	./.	./.	./.
chr12	104138980	rs116894406	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,42:31:79:0.532:2	./.	./.	./.	./.
chr12	104139034	rs7306642	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,12:30:23:0.522:2	0/1:6,8:30:14:0.571:2	./.	./.	./.	0/1:19,20:30:39:0.513:2	./.	0/1:32,25:31:57:0.439:2	./.	./.	./.
chr12	104153004	rs2271637	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:32:12:0.417:2	./.	0/1:59,41:32:100:0.410:2	./.	./.	./.	0/1:60,35:32:95:0.368:2	./.	0/1:52,27:31:79:0.342:2
chr12	104171742	rs17034524	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,33:30:81:0.413:2	0/1:40,49:30:89:0.551:2	0/1:53,42:30:95:0.442:2	./.	0/1:38,15:30:53:0.283:2	0/1:26,40:30:68:0.606:2
chr12	104186946	rs1866295	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:28,25:33:53:0.472:2	0/1:20,11:33:31:0.355:2	./.	./.	./.	./.	0/1:29,13:32:42:0.310:2	./.	0/1:30,28:33:58:0.483:2	./.	0/1:30,29:32:59:0.492:2
chr12	104186995	rs61748068	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,59:32:116:0.509:2
chr12	104208868	rs10861107	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,22:30:62:0.355:2	0/1:27,11:31:38:0.289:2	0/1:2,3:30:5:0.600:2	0/1:36,32:29:68:0.471:2	0/1:23,20:30:43:0.465:2	0/1:32,33:30:65:0.508:2	./.	./.	./.	./.	./.
chr12	104327979	rs6615	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,50:32:95:0.526:2
chr12	104337001	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:31:76:0.053:2	./.	./.	./.
chr12	104341103	rs7645	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,44:33:101:0.436:2	0/1:23,25:33:48:0.521:2	./.	./.	./.	0/1:0,100:31:100:1.00:2	0/1:37,45:32:82:0.549:2	0/1:4,124:32:128:0.969:2	./.	0/1:64,54:32:118:0.458:2	./.
chr12	104341398	rs111907849	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,16:31:30:0.533:2	0/1:8,16:31:24:0.667:2	./.	./.	./.	0/1:1,44:30:45:0.978:2	0/1:10,19:30:29:0.655:2	0/1:0,40:30:40:1.00:2	./.	0/1:23,16:31:39:0.410:2	./.
chr12	104345384	rs2293624	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,41:30:100:0.410:2	0/1:33,25:31:58:0.431:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	104350408	rs116995648	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,75:31:141:0.532:2	./.	./.	./.	./.
chr12	104359779	rs372823872	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:31:14:0.429:2	0/1:18,8:27:26:0.308:2	0/1:16,4:32:20:0.200:2	./.	./.	0/1:13,3:31:16:0.188:2	0/1:31,3:31:34:0.088:2	./.
chr12	104359793	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,8:27:31:0.258:2	./.	./.	./.	./.	./.	./.
chr12	104373829	.	C	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:128,7:27:135:0.052:2	0/1:73,5:32:78:0.064:2	./.	0/1:117,21:31:138:0.152:2	./.	0/1:128,4:31:132:0.030:2	0/1:98,6:33:104:0.058:2	./.	./.	./.	./.
chr12	104373837	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:32:145:0.028:2	0/1:171,4:34:175:0.023:2	./.	./.
chr12	104374688	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:29:82:0.049:2	./.
chr12	104376608	rs61937629	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:185,8:30:193:0.041:2	./.	./.	./.	0/1:182,15:31:197:0.076:2	./.	./.	./.	0/1:190,9:33:199:0.045:2	0/1:179,16:32:195:0.082:2	./.
chr12	104376693	rs4135113	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,70:33:134:0.522:2	0/1:53,55:32:108:0.509:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	104376700	rs61937630	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,8:33:149:0.054:2	./.	./.
chr12	104378633	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:193,4:33:197:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr12	104380734	rs2888805	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,6:31:28:0.222:2
chr12	104380822	rs3953596	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:32:55:0.073:2
chr12	104387233	rs145520946	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,12:32:32:0.375:2	./.	./.	./.
chr12	104390525	rs3817602	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,34:32:69:0.493:2	0/1:18,21:32:39:0.538:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	104413436	rs11553765	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,49:33:111:0.441:2
chr12	104515108	rs115044997	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:16,8:31:24:0.333:2	0/1:3,4:31:7:0.571:2	./.	./.	0/1:6,9:27:15:0.600:2	./.	./.	./.	./.	0/1:12,6:32:18:0.333:2	./.
chr12	104517148	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:33:168:0.024:2	./.
chr12	104517156	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:32:160:0.025:2	./.
chr12	104517188	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:32:123:0.033:2	./.
chr12	104645363	rs7960443	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,16:33:30:0.533:2	0/1:9,6:33:15:0.400:2	0/1:0,2:32:2:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,19:33:19:1.00:2	0/1:32,19:33:51:0.373:2	0/1:24,9:33:33:0.273:2	0/1:2,64:32:66:0.970:2	0/1:0,37:33:37:1.00:2	0/1:0,28:32:28:1.00:2	0/1:27,28:32:55:0.509:2
chr12	104645384	rs73180108	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,20:30:56:0.357:2	./.	./.	./.	./.	./.
chr12	104645405	rs7975161	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,25:29:48:0.521:2	0/1:13,9:28:22:0.409:2	0/1:0,3:32:3:1.00:2	0/1:1,39:30:40:0.975:2	0/1:0,29:30:29:1.00:2	0/1:38,25:29:63:0.397:2	0/1:31,24:29:55:0.436:2	0/1:2,83:30:85:0.976:2	0/1:0,64:30:64:1.00:2	0/1:0,58:30:58:1.00:2	0/1:40,37:30:77:0.481:2
chr12	104698437	rs77135236	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	104698582	rs11111987	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:33:6:0.500:2	0/1:0,64:33:64:1.00:2	0/1:34,26:33:60:0.433:2	./.	0/1:49,5:35:54:0.093:2	0/1:0,81:33:81:1.00:2	./.	0/1:30,22:33:52:0.423:2	0/1:39,29:33:68:0.426:2
chr12	104709559	rs4964287	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:34,48:32:82:0.585:2	0/1:38,27:32:65:0.415:2	./.	./.	0/1:1,77:31:78:0.987:2	0/1:0,116:31:116:1.00:2	0/1:41,54:32:95:0.568:2	0/1:122,4:32:126:0.032:2	0/1:0,147:32:147:1.00:2	0/1:45,43:32:88:0.489:2	./.
chr12	104709574	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:33:164:0.024:2	./.	./.
chr12	104725402	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:31:81:0.049:2	./.	./.	./.	./.	./.
chr12	105199038	rs11112201	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:30,15:31:45:0.333:2	0/1:16,12:31:28:0.429:2	./.	./.	0/1:21,10:30:31:0.323:2	./.	./.	./.	0/1:35,26:31:61:0.426:2	./.	./.
chr12	105282893	rs17036463	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,66:29:121:0.545:2	./.	0/1:47,40:30:87:0.460:2	./.
chr12	105380143	rs12580271	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,26:29:68:0.382:2	./.
chr12	105380152	rs1129593	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:26,30:33:56:0.536:2	0/1:17,35:32:52:0.673:2	./.	./.	0/1:55,56:32:111:0.505:2	./.	./.	0/1:68,47:33:115:0.409:2	./.	0/1:1,64:30:65:0.985:2	./.
chr12	105380185	rs117368247	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,24:33:45:0.533:2	0/1:16,25:32:41:0.610:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	105433523	rs4964317	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,47:32:121:0.388:2	./.	0/1:67,37:31:104:0.356:2	./.	./.	0/1:1,97:32:98:0.990:2	./.	./.
chr12	105434467	rs11112330	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,42:32:71:0.600:2	./.	0/1:25,31:31:56:0.554:2	./.	./.	0/1:0,79:32:79:1.00:2	./.	./.
chr12	105443777	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:122,4:30:126:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr12	105464485	rs74449999	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,62:33:139:0.446:2	./.	./.
chr12	105504953	rs35294333	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,4:34:17:0.235:2	./.	./.	./.
chr12	105521009	rs199570381	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,8:18:80:0.101:2
chr12	105546139	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,4:31:89:0.045:2	./.	./.	./.	./.	./.	./.	./.
chr12	105546172	rs1663564	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,78:32:78:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,109:32:109:1.00:2	0/1:42,32:31:74:0.432:2	0/1:0,96:31:96:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,85:32:85:1.00:2	0/1:78,62:32:140:0.443:2
chr12	105568122	rs935241	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,180:32:182:0.989:2	0/1:0,127:31:127:1.00:2	0/1:2,25:32:28:0.926:2	0/1:0,189:32:189:1.00:2	./.	0/1:1,185:31:186:0.995:2	0/1:2,190:32:192:0.990:2	0/1:0,186:32:186:1.00:2	0/1:0,183:33:183:1.00:2	0/1:122,74:32:196:0.378:2	0/1:104,88:32:192:0.458:2
chr12	105568176	rs935240	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,131:32:134:0.978:2	0/1:0,103:32:103:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,146:32:146:1.00:2	./.	0/1:0,135:31:135:1.00:2	0/1:2,134:32:136:0.985:2	0/1:0,168:31:168:1.00:2	0/1:1,166:32:167:0.994:2	0/1:96,51:32:147:0.347:2	0/1:94,97:32:191:0.508:2
chr12	105583877	rs2272495	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:29:8:0.500:2	./.	./.	0/1:53,34:29:87:0.391:2	./.	./.	./.	0/1:39,28:30:67:0.418:2	./.
chr12	105600935	rs2293643	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:31:11:0.455:2	./.	./.	0/1:30,36:30:66:0.545:2	./.	./.	./.	0/1:24,38:31:62:0.613:2	./.
chr12	106460856	rs7136283	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,30:28:59:0.508:2	./.	./.	./.	./.
chr12	106460938	rs3741883	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,17:26:30:0.567:2	0/1:24,17:28:41:0.415:2	0/1:5,4:29:9:0.444:2	0/1:25,45:28:70:0.643:2	0/1:30,29:27:59:0.492:2	0/1:29,26:29:55:0.473:2	./.	./.	0/1:35,33:29:68:0.485:2	0/1:24,26:27:50:0.520:2	./.
chr12	106633162	rs145284636	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,6:30:14:0.429:2	./.	./.	./.	./.
chr12	106633569	rs3088113	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,17:28:31:0.567:2	0/1:8,6:29:14:0.429:2	./.	0/1:11,24:29:36:0.686:2	0/1:5,7:29:12:0.583:2	./.	./.	./.	./.	./.	./.
chr12	106633585	rs138167410	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,24:31:43:0.558:2	./.	./.	./.	./.	./.
chr12	106704974	rs4964460	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,11:29:24:0.458:2	0/1:8,14:31:22:0.636:2	0/1:0,6:30:6:1.00:2	0/1:0,46:30:46:1.00:2	0/1:1,31:29:32:0.969:2	0/1:23,12:30:35:0.343:2	0/1:0,35:31:35:1.00:2	0/1:18,21:30:39:0.538:2	0/1:0,41:31:41:1.00:2	0/1:0,28:31:28:1.00:2	0/1:20,17:30:37:0.459:2
chr12	106712207	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:33:112:0.036:2	./.	./.
chr12	106729425	rs17218950	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,7:29:21:0.333:2	./.	./.	./.	./.	./.
chr12	106740084	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:32:90:0.044:2	./.
chr12	106763362	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2	./.	./.	./.	./.	./.
chr12	106826199	rs138249161	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,70:33:158:0.443:2	0/1:45,49:32:94:0.521:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	106838328	rs372517855	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:33:111:0.036:2
chr12	106838340	rs10861607	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,44:32:86:0.512:2	./.	0/1:48,52:31:100:0.520:2	./.	./.	./.
chr12	106848414	rs17038460	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,19:34:43:0.442:2	0/1:8,8:29:16:0.500:2	./.	./.	./.	./.	./.	./.	0/1:34,24:34:58:0.414:2	./.	0/1:29,16:32:45:0.356:2
chr12	106903321	rs13561	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:29:8:0.500:2	./.	./.	0/1:27,16:29:43:0.372:2	./.	0/1:20,20:28:40:0.500:2	./.	./.	./.
chr12	106995136	rs7295853	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:28:12:0.667:2	./.	./.	./.	./.	0/1:37,20:27:57:0.351:2	./.	./.	./.
chr12	107083059	rs7961392	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,112:32:192:0.583:2	./.	0/1:67,95:32:162:0.586:2	0/1:78,112:32:190:0.589:2	0/1:98,93:33:191:0.487:2	./.	./.	./.
chr12	107090201	rs10778502	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:48,37:29:85:0.435:2	0/1:19,21:28:41:0.525:2	./.	0/1:43,44:27:87:0.506:2	0/1:69,39:29:108:0.361:2	0/1:57,54:29:111:0.486:2	0/1:72,47:27:119:0.395:2	./.	./.	./.	0/1:0,77:28:77:1.00:2
chr12	107109237	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:31:125:0.032:2	./.	./.	./.	./.	./.
chr12	107113769	rs17038732	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,88:31:188:0.468:2	./.	./.	./.	./.	./.	./.	./.
chr12	107141265	rs61743416	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,46:29:78:0.590:2	./.	./.	./.	./.	./.	./.	./.
chr12	107371788	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,8:32:16:0.500:2	./.	./.	./.	./.	./.
chr12	107372277	rs1043156	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,45:33:83:0.542:2	0/1:19,30:33:49:0.612:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,69:33:138:0.500:2
chr12	107395106	rs8192440	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,136:31:136:1.00:2	0/1:0,66:29:66:1.00:2	0/1:17,12:30:29:0.414:2	0/1:86,71:30:158:0.452:2	0/1:72,65:30:137:0.474:2	0/1:106,76:30:182:0.418:2	0/1:2,96:30:98:0.980:2	0/1:0,148:30:148:1.00:2	0/1:93,75:32:169:0.446:2	0/1:0,160:30:160:1.00:2	0/1:90,59:30:149:0.396:2
chr12	107712880	rs10082935	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,26:31:46:0.565:2	./.	./.	./.	0/1:1,38:30:39:0.974:2	./.	./.	./.
chr12	107713696	rs111260184	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:28:2:1.00:2	0/1:4,9:30:13:0.692:2	0/1:0,7:31:7:1.00:2	./.	./.	0/1:0,11:28:11:1.00:2	./.	./.	./.
chr12	107937768	rs1558781	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,33:31:93:0.355:2	./.	./.	./.	./.	./.	./.
chr12	108008872	rs76689600	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,10:17:47:0.217:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	108008884	rs140496495	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,71:31:136:0.522:2	./.	./.	./.
chr12	108012066	rs61753394	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,29:29:57:0.509:2	./.	./.	./.	./.
chr12	108035903	rs9919712	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,10:30:19:0.526:2	0/1:93,67:29:160:0.419:2	./.	./.	./.	./.	0/1:86,66:29:152:0.434:2	./.	0/1:65,56:29:121:0.463:2
chr12	108051318	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,29:33:171:0.170:2	./.	./.
chr12	108096769	rs11547907	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,24:29:55:0.436:2	./.	./.	./.	0/1:28,47:29:75:0.627:2
chr12	108102757	rs74918182	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:52,46:32:98:0.469:2	0/1:27,21:33:48:0.438:2	0/1:12,4:30:16:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	108138409	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,4:32:97:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr12	108154299	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,8:20:73:0.110:2	./.	./.	./.	./.	./.	./.	./.
chr12	108169637	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,5:34:13:0.385:2	./.	./.
chr12	108618630	rs3764002	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,11:32:51:0.216:2	./.	./.	0/1:39,23:31:62:0.371:2	./.	./.	./.
chr12	108641799	rs144706841	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,54:31:113:0.478:2	./.	./.	./.	./.	./.	./.
chr12	108685688	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:34:118:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	108686008	rs1057401	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:39,31:33:70:0.443:2	0/1:20,12:32:32:0.375:2	0/1:0,7:33:7:1.00:2	./.	./.	0/1:2,75:32:77:0.974:2	0/1:3,86:33:89:0.966:2	0/1:56,32:33:88:0.364:2	0/1:50,41:33:91:0.451:2	0/1:39,33:33:72:0.458:2	0/1:40,29:32:69:0.420:2
chr12	108910756	rs76973043	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,38:31:67:0.567:2
chr12	108910962	rs2303634	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:29:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	108912178	rs35664142	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,9:32:25:0.360:2	./.
chr12	108917330	rs34709181	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,21:30:29:0.724:2
chr12	108917389	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,4:33:25:0.160:2	./.	./.	./.
chr12	108918146	rs2303633	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,125:32:126:0.992:2	0/1:0,60:33:60:1.00:2	0/1:12,9:32:21:0.429:2	0/1:0,179:33:179:1.00:2	0/1:0,146:32:146:1.00:2	0/1:0,179:32:179:1.00:2	0/1:1,146:32:147:0.993:2	0/1:1,178:33:179:0.994:2	0/1:0,132:33:132:1.00:2	0/1:0,139:33:139:1.00:2	0/1:0,162:33:162:1.00:2
chr12	108923950	rs1549096	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,90:29:92:0.978:2	0/1:0,68:28:68:1.00:2	0/1:3,10:29:13:0.769:2	0/1:1,90:29:91:0.989:2	0/1:0,79:29:79:1.00:2	0/1:0,86:29:86:1.00:2	0/1:0,89:29:89:1.00:2	0/1:0,97:28:97:1.00:2	0/1:1,99:29:100:0.990:2	0/1:3,83:29:86:0.965:2	0/1:1,113:29:114:0.991:2
chr12	108923965	rs114192304	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,61:31:129:0.473:2
chr12	108941679	rs12579216	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,19:34:29:0.655:2	./.	./.
chr12	108954823	rs1063936	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:30:65:1.00:2	0/1:0,31:31:31:1.00:2	0/1:7,5:29:12:0.417:2	0/1:0,99:29:99:1.00:2	0/1:0,143:30:143:1.00:2	0/1:0,91:29:91:1.00:2	0/1:1,118:30:119:0.992:2	0/1:1,112:29:113:0.991:2	0/1:0,101:31:101:1.00:2	0/1:0,88:30:88:1.00:2	0/1:1,86:30:87:0.989:2
chr12	108954862	rs2072579	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,59:32:111:0.532:2	./.	0/1:70,44:31:114:0.386:2	0/1:63,50:33:113:0.442:2	0/1:61,46:33:107:0.430:2	0/1:47,51:33:98:0.520:2
chr12	108957944	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,4:33:106:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr12	108985479	rs112991728	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,12:28:38:0.316:2	./.	./.	./.	./.
chr12	108985707	rs7972096	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,12:26:25:0.480:2
chr12	108985785	rs73191224	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,38:32:89:0.427:2	0/1:36,37:33:73:0.507:2	0/1:32,31:33:63:0.492:2	./.
chr12	108985945	rs7975237	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,19:30:44:0.432:2	0/1:41,29:31:70:0.414:2	0/1:1,50:30:51:0.980:2	0/1:31,38:31:69:0.551:2	0/1:0,56:32:56:1.00:2	0/1:26,26:30:52:0.500:2	0/1:25,28:31:53:0.528:2
chr12	108985976	rs112073168	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,13:33:26:0.500:2	./.	./.
chr12	109017264	rs7300972	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,70:29:185:0.378:2
chr12	109017266	rs61729674	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,70:31:189:0.370:2
chr12	109017441	rs139943851	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,26:31:124:0.210:2
chr12	109017454	rs74792300	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,5:27:142:0.035:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,24:32:117:0.205:2
chr12	109017612	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,6:33:166:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	109017655	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,8:31:92:0.087:2	./.	./.	./.	./.
chr12	109017728	rs200073676	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,65:31:149:0.436:2	./.	./.	./.
chr12	109017898	rs2228315	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,87:29:174:0.500:2	0/1:80,48:31:128:0.375:2	./.	./.
chr12	109182049	rs3741778	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,14:27:27:0.519:2	0/1:14,14:28:28:0.500:2	./.	./.	./.	0/1:0,15:29:15:1.00:2	./.	./.
chr12	109182195	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,6:31:17:0.353:2	0/1:9,10:31:19:0.526:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	109182922	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:27:63:0.063:2	./.	./.
chr12	109186023	rs149188196	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,47:30:78:0.610:2	./.	./.	./.
chr12	109281310	rs7980427	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,68:33:135:0.504:2	./.	./.	./.	./.	0/1:4,146:33:150:0.973:2	./.	0/1:74,63:33:137:0.460:2
chr12	109286758	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,4:32:96:0.042:2	./.	./.	./.	./.	./.	./.	./.
chr12	109511256	rs7967322	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:33:55:1.00:2	0/1:1,53:32:54:0.981:2	0/1:0,7:31:7:1.00:2	0/1:53,34:33:87:0.391:2	0/1:0,52:31:52:1.00:2	0/1:0,66:32:67:1.00:2	0/1:57,57:32:114:0.500:2	0/1:40,57:32:97:0.588:2	0/1:0,95:33:95:1.00:2	0/1:37,32:30:69:0.464:2	0/1:51,46:33:97:0.474:2
chr12	109519806	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,5:33:196:0.026:2	./.	./.	./.	./.
chr12	109520769	rs16939904	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,63:28:115:0.548:2	./.	./.	./.	./.	./.	./.
chr12	109523588	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.	./.	./.
chr12	109527872	rs139644396	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,36:29:75:0.480:2	0/1:21,28:30:49:0.571:2	./.	./.	./.	0/1:42,17:29:59:0.288:2	./.	./.	./.	./.	./.
chr12	109577735	rs2878960	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:33:44:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,3:34:3:1.00:2	0/1:35,25:32:60:0.417:2	0/1:0,47:32:47:1.00:2	0/1:1,45:31:46:0.978:2	0/1:2,41:33:43:0.953:2	0/1:1,62:32:63:0.984:2	0/1:0,50:34:50:1.00:2	0/1:1,37:33:38:0.974:2	./.
chr12	109613825	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:32:160:0.025:2
chr12	109617865	rs11065772	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:27:43:1.00:2	0/1:0,16:27:16:1.00:2	0/1:0,9:28:9:1.00:2	0/1:36,33:28:69:0.478:2	0/1:2,67:27:69:0.971:2	0/1:0,64:28:64:1.00:2	0/1:32,23:27:55:0.418:2	0/1:1,69:27:70:0.986:2	0/1:0,70:29:70:1.00:2	0/1:0,63:28:63:1.00:2	0/1:36,40:28:77:0.526:2
chr12	109629457	rs7135947	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,87:30:162:0.544:2	0/1:72,64:31:138:0.471:2	0/1:0,37:30:37:1.00:2	0/1:99,74:30:173:0.428:2	0/1:4,162:30:166:0.976:2	0/1:95,83:31:178:0.466:2	0/1:91,90:31:182:0.497:2	0/1:92,83:31:175:0.474:2	0/1:0,174:30:174:1.00:2	0/1:1,175:30:176:0.994:2	0/1:95,80:30:176:0.457:2
chr12	109654486	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,4:31:82:0.049:2	./.	./.	./.	./.	./.	./.
chr12	109665242	rs60293430	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,7:29:10:0.700:2	./.	0/1:50,38:32:88:0.432:2	./.	./.	./.	./.	./.	./.
chr12	109675029	rs2241220	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,146:32:147:0.993:2	0/1:0,99:31:99:1.00:2	0/1:0,28:31:28:1.00:2	0/1:93,75:33:168:0.446:2	0/1:1,184:31:185:0.995:2	0/1:0,175:32:175:1.00:2	0/1:113,82:33:195:0.421:2	0/1:2,180:32:182:0.989:2	0/1:2,156:34:158:0.987:2	0/1:0,151:32:151:1.00:2	0/1:0,150:32:150:1.00:2
chr12	109692053	rs17848835	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,21:30:59:0.356:2	./.	./.	0/1:22,22:32:44:0.500:2	./.
chr12	109693982	rs3742023	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:47,68:32:115:0.591:2	0/1:26,24:32:50:0.480:2	./.	0/1:76,61:31:138:0.445:2	0/1:101,97:30:198:0.490:2	0/1:75,84:31:159:0.528:2	0/1:99,100:31:199:0.503:2	0/1:92,103:31:195:0.528:2	./.	0/1:74,60:32:134:0.448:2	0/1:2,128:32:130:0.985:2
chr12	109696838	rs2075260	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:32:39:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,19:32:19:1.00:2	0/1:25,42:31:67:0.627:2	0/1:0,75:31:75:1.00:2	0/1:40,31:31:71:0.437:2	0/1:1,54:31:55:0.982:2	0/1:43,37:31:80:0.463:2	0/1:45,36:32:81:0.444:2	0/1:0,47:32:47:1.00:2	0/1:0,63:31:63:1.00:2
chr12	109717697	rs10774641	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,14:31:26:0.538:2	0/1:9,8:32:17:0.471:2	0/1:0,3:31:3:1.00:2	0/1:11,14:32:25:0.560:2	0/1:0,27:32:27:1.00:2	0/1:9,8:32:17:0.471:2	0/1:8,7:30:15:0.467:2	0/1:12,14:32:26:0.538:2	./.	0/1:5,8:32:13:0.615:2	0/1:0,17:33:17:1.00:2
chr12	109719365	rs78569015	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,11:11:56:0.196:2	./.	./.	./.	./.	./.
chr12	109723233	rs17177336	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,40:31:87:0.460:2	0/1:26,24:31:50:0.480:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,36:31:91:0.396:2
chr12	109725688	rs7959782	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,29:29:66:0.439:2	./.	./.	0/1:44,38:30:82:0.463:2	0/1:49,34:30:83:0.410:2
chr12	109826634	rs11611277	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,70:33:149:0.470:2	0/1:89,73:32:162:0.451:2	0/1:90,77:33:167:0.461:2	0/1:81,66:33:147:0.449:2	./.
chr12	109835590	rs11611358	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:20,14:34:34:0.412:2	0/1:14,15:31:29:0.517:2	0/1:1,8:32:9:0.889:2	./.	0/1:25,16:30:41:0.390:2	./.	0/1:16,17:32:33:0.515:2	0/1:18,26:33:44:0.591:2	0/1:11,28:34:39:0.718:2	0/1:20,12:33:32:0.375:2	./.
chr12	109839042	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,38:32:65:0.585:2	./.	./.
chr12	109844678	rs11835066	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,7:31:12:0.583:2	./.	./.	./.	./.
chr12	109848567	rs7315991	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:22,13:33:35:0.371:2	0/1:9,9:32:18:0.500:2	./.	./.	0/1:7,11:32:18:0.611:2	./.	0/1:12,10:32:22:0.455:2	0/1:10,6:33:16:0.375:2	0/1:0,29:33:29:1.00:2	0/1:6,17:33:23:0.739:2	0/1:8,13:33:21:0.619:2
chr12	109853349	rs73194218	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,26:28:73:0.356:2	./.	./.	./.	./.	./.	./.
chr12	109872909	rs34725387	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,24:32:79:0.304:2
chr12	109883374	rs3825393	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:11,15:28:26:0.577:2	0/1:11,6:28:17:0.353:2	0/1:1,5:29:6:0.833:2	./.	./.	0/1:13,12:26:25:0.480:2	0/1:2,8:28:10:0.800:2	0/1:6,11:28:17:0.647:2	0/1:0,23:28:23:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,19:25:19:1.00:2
chr12	109894028	rs2302706	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,36:33:97:0.371:2	0/1:56,65:32:121:0.537:2	0/1:73,63:33:136:0.463:2	0/1:48,42:33:90:0.467:2	./.
chr12	109937534	rs7298565	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:60,55:33:115:0.478:2	0/1:37,32:32:69:0.464:2	0/1:0,21:32:21:1.00:2	./.	0/1:80,102:32:183:0.560:2	0/1:110,62:32:172:0.360:2	0/1:112,59:32:171:0.345:2	0/1:109,87:32:196:0.444:2	0/1:2,161:33:163:0.988:2	0/1:0,128:33:128:1.00:2	./.
chr12	109948213	rs61760194	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,17:32:40:0.425:2	./.	./.	./.
chr12	109968427	rs12679	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:32,30:32:62:0.484:2	0/1:28,18:32:46:0.391:2	./.	./.	./.	./.	./.	0/1:99,4:34:103:0.039:2	./.	./.	./.
chr12	109994870	rs9593	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:46,40:33:86:0.465:2	0/1:29,15:33:44:0.341:2	0/1:0,6:32:6:1.00:2	./.	0/1:39,29:31:68:0.426:2	0/1:43,33:32:76:0.434:2	0/1:41,27:33:68:0.397:2	0/1:70,38:32:108:0.352:2	0/1:0,106:33:106:1.00:2	0/1:0,76:33:76:1.00:2	./.
chr12	109994935	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,3:31:37:0.081:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	110002976	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,4:32:40:0.103:2	./.	./.	./.	./.	./.	./.
chr12	110011229	rs10774774	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:4,12:31:16:0.750:2	0/1:4,6:28:10:0.600:2	0/1:0,3:30:3:1.00:2	./.	0/1:8,5:25:13:0.385:2	0/1:1,9:30:10:0.900:2	./.	./.	0/1:0,21:32:21:1.00:2	0/1:10,8:31:18:0.444:2	./.
chr12	110011230	rs10774775	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:4,12:30:16:0.750:2	0/1:4,6:31:10:0.600:2	0/1:0,3:31:3:1.00:2	./.	0/1:8,5:30:13:0.385:2	0/1:1,9:31:10:0.900:2	./.	./.	0/1:0,21:32:21:1.00:2	0/1:10,8:31:18:0.444:2	./.
chr12	110013879	rs7957619	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.	0/1:32,21:30:53:0.396:2	./.	./.	./.	0/1:40,26:32:66:0.394:2	0/1:31,37:31:68:0.544:2	./.
chr12	110019233	rs34368092	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:31:10:0.600:2	./.	./.	./.	./.	./.	./.	0/1:11,20:32:31:0.645:2	./.
chr12	110019338	rs2287218	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,66:31:148:0.446:2	0/1:58,53:31:111:0.477:2	./.	0/1:32,50:31:82:0.610:2	./.
chr12	110024541	rs2270375	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,13:29:34:0.382:2	0/1:48,26:31:74:0.351:2	./.	0/1:22,26:30:48:0.542:2	./.
chr12	110024544	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:34:69:0.058:2	./.	./.	./.	./.	./.
chr12	110032853	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:32:43:0.093:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	110221524	rs55728855	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,29:30:64:0.453:2	./.	./.	./.	./.	./.	./.	./.
chr12	110226379	rs3742037	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,52:32:111:0.468:2	0/1:43,25:32:68:0.368:2	0/1:9,3:31:12:0.250:2	0/1:67,72:31:139:0.518:2	./.	./.	0/1:111,74:32:185:0.400:2	./.	./.	./.	./.
chr12	110232233	rs182609216	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,35:29:79:0.443:2	./.	./.	./.	./.	./.	./.
chr12	110238487	rs3742034	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,22:30:49:0.449:2	0/1:14,24:30:38:0.632:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	110240838	rs3825394	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,62:29:62:1.00:2	0/1:0,30:28:30:1.00:2	./.	0/1:69,40:30:109:0.367:2	./.	0/1:54,32:28:86:0.372:2	0/1:65,58:28:123:0.472:2	0/1:80,51:28:131:0.389:2	0/1:0,84:30:84:1.00:2	./.	./.
chr12	110293490	rs76870414	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,89:31:174:0.511:2
chr12	110296508	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,4:32:143:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr12	110340852	rs11539159	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:35,46:32:81:0.568:2	0/1:30,29:31:59:0.492:2	./.	./.	./.	./.	0/1:45,68:31:113:0.602:2	0/1:60,58:31:118:0.492:2	0/1:69,54:32:123:0.439:2	./.	0/1:44,51:31:95:0.537:2
chr12	110341933	rs10774978	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:8,12:33:20:0.600:2	0/1:11,6:32:17:0.353:2	./.	./.	./.	./.	0/1:0,39:32:39:1.00:2	0/1:14,14:32:28:0.500:2	0/1:8,10:33:18:0.556:2	./.	0/1:9,12:34:21:0.571:2
chr12	110342593	rs186211529	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,9:32:27:0.333:2	./.	./.	./.	./.	./.	./.	./.
chr12	110346433	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:33:72:0.056:2	./.	./.	./.	./.
chr12	110371897	rs16940703	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,36:33:89:0.404:2	./.	./.	./.	./.
chr12	110385079	rs2063388	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,85:30:192:0.443:2	./.	./.	./.	./.
chr12	110386611	rs74578156	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,4:32:17:0.235:2	./.	./.	./.	./.
chr12	110456175	rs2302689	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:76,48:30:124:0.387:2	0/1:29,31:29:60:0.517:2	./.	./.	./.	./.	0/1:2,116:29:118:0.983:2	0/1:88,110:29:198:0.556:2	0/1:97,77:31:174:0.443:2	./.	0/1:80,90:30:170:0.529:2
chr12	110474070	rs2287174	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,66:33:136:0.485:2	./.	./.	./.	./.
chr12	110496956	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,5:27:88:0.057:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	110618235	rs16940805	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,16:32:37:0.432:2	./.	./.	./.	./.	./.
chr12	110630438	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:31:153:0.026:2	./.	./.
chr12	110780107	rs56243033	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,89:32:159:0.560:2	./.	./.	./.	./.	./.
chr12	110788064	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,33:28:73:0.452:2	./.	./.	./.	./.	./.	./.
chr12	110841439	rs138457092	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,34:32:78:0.436:2	./.	./.	./.	./.
chr12	110922929	rs7956133	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,28:33:62:0.452:2	./.	./.	./.	./.
chr12	110924375	rs77563856	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,64:32:136:0.471:2
chr12	110960196	rs34513555	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,85:32:180:0.472:2	./.	./.	./.	./.
chr12	110974890	rs10849900	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,36:29:58:0.621:2	./.	0/1:36,31:28:67:0.463:2	./.	./.	./.	0/1:20,14:28:34:0.412:2	./.
chr12	111020696	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:34:3:0.667:2
chr12	111082886	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,4:30:30:0.133:2	./.	./.	./.	./.	./.
chr12	111158936	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:33:72:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	111160003	rs1973505	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:31,42:32:73:0.575:2	0/1:36,34:31:70:0.486:2	./.	./.	./.	./.	0/1:0,83:31:83:1.00:2	0/1:78,38:31:116:0.328:2	0/1:76,53:32:129:0.411:2	./.	0/1:56,65:32:121:0.537:2
chr12	111168492	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,8:33:80:0.100:2	./.
chr12	111342558	rs34300256	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,19:30:19:1.00:2	0/1:0,41:31:41:1.00:2	0/1:21,16:31:37:0.432:2	./.	0/1:26,10:32:36:0.278:2	./.
chr12	111353556	rs2301610	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,83:31:181:0.459:2	./.	./.
chr12	111747963	rs3742007	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,10:31:17:0.588:2	./.	./.	./.	./.	0/1:10,6:29:16:0.375:2	0/1:6,9:33:15:0.600:2	./.
chr12	111748071	rs73418724	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,12:33:16:0.750:2	0/1:9,3:32:12:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	111760251	rs3742006	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:31:11:0.273:2	./.	./.	./.	./.	0/1:6,7:32:13:0.538:2	0/1:1,5:32:6:0.833:2	./.
chr12	111785586	rs3803167	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,22:29:49:0.449:2	./.	./.	./.	./.	./.	0/1:9,12:28:21:0.571:2	./.
chr12	111786082	rs6490073	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:31:22:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,42:31:42:1.00:2	0/1:1,34:33:35:0.971:2	0/1:0,24:31:24:1.00:2	0/1:0,37:32:37:1.00:2
chr12	111884608	rs3184504	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:39,36:31:76:0.480:2	0/1:38,28:30:66:0.424:2	./.	0/1:60,63:30:123:0.512:2	./.	./.	0/1:67,60:31:127:0.472:2	0/1:1,156:30:157:0.994:2	./.	0/1:66,58:30:124:0.468:2	0/1:53,41:29:94:0.436:2
chr12	111885291	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,32:30:53:0.604:2
chr12	111907917	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,6:23:130:0.046:2	./.	./.	./.	./.	./.
chr12	111908489	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:32:136:0.029:2	./.
chr12	111924609	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,15:33:27:0.556:2	./.	./.	./.
chr12	111993712	rs7969300	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,12:32:35:0.343:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	112036797	rs4098854	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.
chr12	112165822	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,12:16:140:0.086:2	./.	./.	./.	./.
chr12	112165907	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:29:95:0.042:2
chr12	112184024	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:123,4:32:127:0.031:2	./.	./.	./.	./.	./.	./.
chr12	112191585	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:33:117:0.034:2	./.	./.	./.	./.	./.
chr12	112191641	rs2074055	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,40:31:67:0.597:2	0/1:26,15:31:41:0.366:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	112229137	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,55:28:141:0.390:2	./.	./.	./.	./.
chr12	112369577	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,5:28:117:0.043:2
chr12	112375990	rs3752630	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,42:32:85:0.494:2	./.	./.	./.	./.	./.	./.	./.
chr12	112451343	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,3:31:36:0.083:2	./.	./.	./.	./.
chr12	112457636	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:187,4:33:191:0.021:2	./.	./.	./.	./.	./.	0/1:178,5:30:183:0.027:2	./.
chr12	112460147	rs10774648	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,24:30:53:0.453:2	0/1:19,8:31:27:0.296:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	112460215	rs147970597	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,22:32:51:0.431:2	./.
chr12	112477055	rs12231744	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,62:34:136:0.456:2	0/1:58,34:33:92:0.370:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	112480954	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:30:68:0.059:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	112568373	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:33:46:0.087:2	./.
chr12	112580071	rs7970397	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,45:31:98:0.459:2	./.	./.	./.	./.	./.	./.	./.
chr12	112583447	rs79680080	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,85:33:172:0.494:2	./.	./.	./.	./.	./.	./.	./.
chr12	112605163	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,74:32:173:0.428:2	./.	./.	./.	./.
chr12	112616826	rs374106393	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2	./.	./.	./.
chr12	112667675	rs1005902	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:29,29:31:58:0.500:2	0/1:25,29:30:54:0.537:2	./.	0/1:36,64:31:100:0.640:2	./.	./.	./.	./.	./.	./.	./.
chr12	112669359	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,4:32:27:0.148:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	112688167	rs182972630	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,13:17:36:0.361:2	./.	./.	0/1:25,14:13:39:0.359:2	0/1:17,13:11:31:0.433:2	0/1:15,25:17:40:0.625:2	./.	0/1:24,18:12:42:0.429:2	0/1:27,11:13:38:0.289:2	0/1:8,13:13:21:0.619:2	0/1:13,12:17:25:0.480:2
chr12	112703732	rs2301757	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,45:30:101:0.446:2	0/1:43,25:29:68:0.368:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	112892433	rs76982592	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:149,4:31:154:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr12	112892449	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:120,4:31:124:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr12	112915511	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:33:128:0.031:2	./.	./.	./.
chr12	112919950	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,6:33:135:0.044:2	0/1:142,6:31:148:0.041:2	./.	./.	./.	./.	./.
chr12	112926888	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:134,5:32:139:0.036:2	./.	./.	./.	./.	./.	./.
chr12	112942547	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:33:161:0.025:2	./.	./.
chr12	113313470	rs2891411	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,58:32:58:1.00:2	./.	./.	0/1:48,26:31:74:0.351:2	0/1:1,102:32:103:0.990:2	0/1:27,25:33:52:0.481:2	0/1:24,20:32:44:0.455:2	0/1:39,26:32:65:0.400:2
chr12	113314621	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,9:31:23:0.391:2	0/1:8,7:32:15:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	113319600	rs2240194	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,23:33:51:0.451:2	0/1:18,20:31:38:0.526:2	0/1:0,7:32:7:1.00:2	0/1:0,51:31:51:1.00:2	0/1:57,32:31:89:0.360:2	./.	0/1:38,40:31:78:0.513:2	0/1:3,70:32:73:0.959:2	0/1:36,35:33:71:0.493:2	0/1:19,17:32:36:0.472:2	0/1:39,41:32:80:0.513:2
chr12	113325629	rs4141253	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,24:30:44:0.545:2	0/1:29,7:32:36:0.194:2	0/1:0,6:29:6:1.00:2	0/1:0,49:31:49:1.00:2	0/1:18,10:31:28:0.357:2	0/1:30,17:30:47:0.362:2	./.	0/1:2,62:30:64:0.969:2	0/1:39,38:32:77:0.494:2	0/1:27,27:30:54:0.500:2	0/1:40,26:31:66:0.394:2
chr12	113334570	rs149505251	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:34:47:0.085:2	./.
chr12	113348870	rs1131454	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,29:32:58:0.500:2	0/1:14,13:33:27:0.481:2	0/1:1,4:33:5:0.800:2	0/1:47,45:32:92:0.489:2	0/1:0,61:32:61:1.00:2	0/1:0,69:32:69:1.00:2	./.	./.	0/1:0,80:33:80:1.00:2	0/1:42,31:33:73:0.425:2	0/1:0,80:33:80:1.00:2
chr12	113357193	rs10774671	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,37:32:67:0.552:2	0/1:15,15:32:30:0.500:2	0/1:9,5:30:14:0.357:2	0/1:49,37:33:86:0.430:2	0/1:2,66:31:68:0.971:2	0/1:1,72:31:73:0.986:2	0/1:42,21:32:63:0.333:2	./.	0/1:0,74:33:74:1.00:2	0/1:44,34:32:78:0.436:2	0/1:0,48:33:48:1.00:2
chr12	113357209	rs1131476	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,35:30:70:0.507:2	0/1:15,17:31:32:0.531:2	0/1:8,6:29:14:0.429:2	0/1:53,43:30:96:0.448:2	0/1:1,74:29:75:0.987:2	0/1:1,84:29:85:0.988:2	0/1:0,65:30:65:1.00:2	./.	0/1:0,78:31:78:1.00:2	0/1:42,35:30:77:0.455:2	0/1:0,61:31:61:1.00:2
chr12	113357237	rs1051042	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,38:29:74:0.514:2	0/1:21,16:29:37:0.432:2	0/1:10,6:29:16:0.375:2	0/1:53,44:29:97:0.454:2	0/1:0,81:30:81:1.00:2	0/1:1,100:29:101:0.990:2	0/1:0,65:30:65:1.00:2	./.	0/1:0,92:30:92:1.00:2	0/1:42,28:30:70:0.400:2	0/1:0,70:30:70:1.00:2
chr12	113357442	rs2660	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:38,41:33:80:0.519:2	0/1:28,13:33:41:0.317:2	./.	0/1:56,41:33:97:0.423:2	0/1:3,59:32:62:0.952:2	0/1:1,79:32:80:0.988:2	0/1:0,73:32:73:1.00:2	./.	0/1:0,84:33:84:1.00:2	0/1:48,24:32:72:0.333:2	0/1:0,96:32:96:1.00:2
chr12	113376388	rs1859330	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:32:6:0.500:2	0/1:0,27:30:27:1.00:2	0/1:0,15:30:15:1.00:2	./.	./.	0/1:4,6:32:10:0.600:2	0/1:2,5:29:7:0.714:2	0/1:0,8:32:8:1.00:2
chr12	113376452	rs1859329	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:32:5:0.800:2	0/1:0,5:30:5:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,2:30:2:1.00:2	./.	0/1:5,3:32:8:0.375:2	./.	0/1:0,2:35:2:1.00:2
chr12	113382381	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,6:31:38:0.158:2	./.	./.	./.	./.	./.
chr12	113386779	rs2285933	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:41,3:33:44:0.068:2	0/1:6,7:31:13:0.538:2	./.	./.	0/1:44,37:32:81:0.457:2	0/1:57,47:31:104:0.452:2	./.	./.	./.	./.
chr12	113386950	rs2285932	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,10:28:24:0.417:2	0/1:5,5:29:10:0.500:2	0/1:4,5:28:9:0.556:2	0/1:14,18:30:32:0.563:2	0/1:0,34:27:34:1.00:2	0/1:1,29:28:30:0.967:2	0/1:0,37:28:37:1.00:2	./.	0/1:11,13:28:24:0.542:2	0/1:8,9:30:17:0.529:2	0/1:0,21:29:21:1.00:2
chr12	113388530	rs7307875	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,34:32:64:0.531:2	./.	./.	./.	./.
chr12	113398919	rs2072136	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,33:31:35:0.943:2	./.	./.	./.	0/1:26,26:32:52:0.500:2	./.	./.
chr12	113401199	rs45603631	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:52,54:32:106:0.509:2	0/1:29,25:31:54:0.463:2	./.	0/1:68,74:31:143:0.521:2	./.	0/1:83,78:31:161:0.484:2	0/1:71,69:32:140:0.493:2	./.	./.	0/1:48,36:32:84:0.429:2	0/1:59,54:32:113:0.478:2
chr12	113403684	rs2240188	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:31:11:0.727:2	./.	./.	0/1:40,37:31:77:0.481:2	0/1:54,58:31:112:0.518:2	./.	./.	./.	./.
chr12	113405785	rs878740	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,45:32:74:0.608:2	./.	./.	./.	./.
chr12	113407412	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:31:122:0.033:2	./.	./.	./.	./.
chr12	113424893	rs2072138	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,8:29:20:0.400:2	0/1:53,54:30:107:0.505:2	./.	0/1:60,66:30:126:0.524:2	./.	./.	./.	./.	./.
chr12	113424899	rs141972778	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,50:30:105:0.476:2	./.	./.	./.	./.	./.	./.	./.
chr12	113425154	rs1293767	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,8:31:25:0.320:2	0/1:5,19:32:24:0.792:2	./.	0/1:26,7:31:33:0.212:2	0/1:0,33:33:33:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,24:33:24:1.00:2	./.	0/1:21,19:32:40:0.475:2	0/1:23,14:32:37:0.378:2	0/1:0,43:31:43:1.00:2
chr12	113435450	rs1293755	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,42:32:74:0.568:2	0/1:33,28:32:61:0.459:2	0/1:9,3:31:12:0.250:2	0/1:81,40:31:121:0.331:2	0/1:0,80:31:80:1.00:2	0/1:0,95:30:95:1.00:2	0/1:0,83:31:83:1.00:2	0/1:172,5:31:177:0.028:2	0/1:61,45:32:106:0.425:2	0/1:71,28:32:99:0.283:2	0/1:0,108:31:109:1.00:2
chr12	113448288	rs15895	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,15:32:30:0.500:2	0/1:0,17:32:17:1.00:2	0/1:12,11:32:23:0.478:2	0/1:8,5:33:13:0.385:2	./.	0/1:21,10:33:31:0.323:2	0/1:13,13:33:26:0.500:2	0/1:0,34:32:34:1.00:2
chr12	113515329	rs201802722	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,5:26:28:0.179:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	113532617	rs12427377	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:31:9:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	113533124	rs2243396	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,21:31:21:1.00:2	0/1:7,4:32:11:0.364:2	0/1:0,48:31:48:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,82:30:82:1.00:2	0/1:26,25:31:51:0.490:2	0/1:0,40:31:40:1.00:2	0/1:0,66:31:66:1.00:2
chr12	113534736	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,19:31:35:0.543:2	./.	./.
chr12	113537773	rs12422659	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:32:7:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	113538415	rs73207006	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	113542098	rs12423570	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,12:33:18:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	113543517	rs202143463	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,10:14:44:0.227:2	./.	./.	./.	0/1:35,12:15:47:0.255:2	./.	0/1:30,8:14:38:0.211:2	./.
chr12	113553481	rs1284879	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:30:43:1.00:2	0/1:0,28:29:28:1.00:2	0/1:5,5:29:10:0.500:2	0/1:0,67:28:68:1.00:2	0/1:0,82:29:82:1.00:2	0/1:0,57:29:57:1.00:2	0/1:2,68:30:70:0.971:2	0/1:2,76:29:78:0.974:2	0/1:34,25:30:59:0.424:2	0/1:0,42:28:42:1.00:2	0/1:0,74:28:74:1.00:2
chr12	113565933	rs34598602	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	113573251	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:32:189:0.021:2	./.	./.
chr12	113589762	rs61738692	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	113596866	rs1048889	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:31:10:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	113614645	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,40:32:89:0.449:2	./.	./.	./.	./.	./.
chr12	113629471	rs34831139	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:31:11:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	113704091	rs138531225	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,7:31:10:0.700:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	113742148	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,4:30:53:0.075:2	./.	./.	./.	./.	./.	./.
chr12	113796566	rs7965471	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.
chr12	113812312	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:32:96:0.042:2	./.	./.	./.	./.
chr12	113821995	rs149632527	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:114,4:33:118:0.034:2	./.	./.	./.	./.	./.	./.
chr12	113822728	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:30:55:0.073:2	./.	./.	./.
chr12	113823012	rs146581080	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,87:32:144:0.604:2	./.	./.	./.	./.	./.	./.	./.
chr12	113825573	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:31:141:0.028:2	./.	./.	./.	./.
chr12	113825679	rs12425042	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:30:11:0.545:2	./.	0/1:54,42:31:96:0.438:2	./.	./.	./.	0/1:42,37:32:79:0.468:2	./.	./.
chr12	114261053	rs11066773	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,19:32:36:0.528:2	./.	./.	./.	./.	0/1:14,11:30:25:0.440:2	./.
chr12	114282496	rs2075387	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,9:33:17:0.529:2	0/1:13,13:32:26:0.500:2	./.	0/1:5,17:32:22:0.773:2	0/1:0,18:31:18:1.00:2
chr12	114362483	rs3782456	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,31:34:53:0.585:2	0/1:28,13:32:41:0.317:2	0/1:0,13:32:13:1.00:2	0/1:49,32:32:81:0.395:2	0/1:0,32:33:32:1.00:2	0/1:1,59:32:60:0.983:2	./.	0/1:49,39:32:88:0.443:2	0/1:60,49:33:109:0.450:2	0/1:1,43:34:44:0.977:2	0/1:67,54:32:121:0.446:2
chr12	114374887	rs2290787	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:60,40:29:101:0.400:2	0/1:30,38:29:68:0.559:2	0/1:8,7:28:15:0.467:2	./.	./.	./.	./.	./.	0/1:51,53:30:104:0.510:2	./.	./.
chr12	114377835	rs2290788	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,9:31:26:0.346:2	0/1:9,4:32:13:0.308:2	./.	./.	./.	./.	./.	./.	0/1:13,3:31:16:0.188:2	./.	./.
chr12	114377877	rs2290789	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,6:31:27:0.222:2	./.	./.	./.	./.	./.	./.	./.	0/1:17,12:31:29:0.414:2	./.	./.
chr12	114377885	rs2290790	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:29:5:0.600:2	0/1:25,23:30:48:0.479:2	0/1:0,43:29:43:1.00:2	0/1:24,21:30:45:0.467:2	./.	0/1:23,23:30:46:0.500:2	./.	0/1:0,22:30:22:1.00:2	0/1:13,5:30:18:0.278:2
chr12	114377899	rs7299217	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:31:26:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,17:30:17:1.00:2
chr12	114383651	rs12321179	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:48,49:31:97:0.505:2	0/1:23,23:30:46:0.500:2	0/1:3,4:30:7:0.571:2	./.	./.	./.	./.	./.	0/1:75,77:32:152:0.507:2	./.	./.
chr12	114383659	rs62621126	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,76:30:192:0.396:2	./.	./.	./.	0/1:64,50:30:115:0.439:2
chr12	114386639	rs17849837	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,25:26:51:0.490:2	0/1:9,14:26:23:0.609:2	./.	./.	./.	./.	./.	./.	0/1:25,39:29:64:0.609:2	./.	./.
chr12	114395651	rs10850256	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:42,41:33:83:0.494:2	0/1:31,41:33:72:0.569:2	0/1:11,6:33:17:0.353:2	./.	./.	./.	./.	./.	0/1:56,71:33:127:0.559:2	./.	./.
chr12	114397192	rs140397506	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,27:32:58:0.466:2	./.	./.
chr12	114803954	rs28730762	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,30:31:53:0.566:2
chr12	114837349	rs77357563	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,55:31:117:0.478:2	./.	./.	./.	./.	./.
chr12	115109736	rs34831817	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,34:32:65:0.523:2	./.	./.	./.	./.
chr12	115112507	rs146589414	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,9:31:18:0.500:2	./.	./.
chr12	115120703	rs138271676	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,3:33:56:0.054:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	115120935	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,4:32:24:0.167:2	./.
chr12	116403920	rs3088260	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,22:32:50:0.440:2	./.	./.	./.	./.	./.
chr12	116408538	rs2304460	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,37:31:63:0.587:2	0/1:13,21:30:34:0.618:2	0/1:2,3:32:5:0.600:2	0/1:40,52:31:92:0.565:2	0/1:54,48:31:102:0.471:2	./.	./.	./.	./.	./.	./.
chr12	116418600	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,13:31:51:0.255:2	./.	./.	./.	./.	./.	./.	./.
chr12	116421133	rs150222863	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,78:28:164:0.476:2	./.	./.	./.	./.
chr12	116425033	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:32:130:0.031:2	./.	./.
chr12	116429689	rs1865787	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:7,3:33:10:0.300:2	./.	0/1:1,2:33:3:0.667:2	0/1:7,7:32:14:0.500:2	./.	./.	./.	./.	./.	./.
chr12	116446445	rs3741768	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,45:32:104:0.433:2	0/1:28,28:31:56:0.500:2	0/1:11,5:32:16:0.313:2	0/1:69,55:31:124:0.444:2	0/1:57,46:31:103:0.447:2	./.	./.	./.	./.	./.	./.
chr12	117013842	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:33:195:0.026:2	0/1:174,4:34:178:0.022:2	./.	./.	./.	./.
chr12	117014085	rs111327250	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:155,5:31:160:0.031:2	./.	./.	0/1:176,4:32:180:0.022:2	./.	./.	0/1:157,7:30:164:0.043:2	./.	./.	./.	./.
chr12	117014217	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:30:86:0.047:2	./.	./.
chr12	117014231	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,5:30:80:0.063:2	./.
chr12	117014406	rs12422812	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,5:33:12:0.417:2	./.	./.	./.	./.	./.
chr12	117157598	rs150275614	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,26:30:62:0.419:2	./.	./.	./.	./.	./.	./.	./.
chr12	117160976	rs10507274	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:29:8:0.500:2	./.	./.	./.	./.	0/1:71,64:28:135:0.474:2	./.	0/1:47,40:30:87:0.460:2	0/1:63,56:29:119:0.471:2
chr12	117175608	rs73220422	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,14:30:23:0.609:2	./.	./.	./.	./.	./.	./.	./.	0/1:38,24:30:62:0.387:2
chr12	117204666	rs113021396	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:115,4:34:119:0.034:2	./.	./.	./.	./.	./.	./.	./.	0/1:54,60:34:114:0.526:2	./.	./.
chr12	117217141	rs4767452	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,64:29:64:1.00:2	0/1:0,35:28:35:1.00:2	0/1:0,10:29:10:1.00:2	./.	0/1:0,116:28:116:1.00:2	0/1:0,99:29:99:1.00:2	0/1:0,126:28:126:1.00:2	0/1:70,51:29:121:0.421:2	0/1:30,39:29:69:0.565:2	0/1:0,53:29:53:1.00:2	0/1:0,73:28:73:1.00:2
chr12	117383320	rs4076700	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,56:32:56:1.00:2	0/1:0,37:32:37:1.00:2	./.	0/1:40,15:31:55:0.273:2	0/1:0,53:30:53:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,62:32:62:1.00:2
chr12	117465857	rs4529958	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,29:29:57:0.509:2	0/1:15,20:30:35:0.571:2	0/1:0,13:29:13:1.00:2	0/1:0,118:30:118:1.00:2	0/1:0,115:29:115:1.00:2	0/1:0,102:30:102:1.00:2	0/1:70,62:30:132:0.470:2	0/1:55,50:29:105:0.476:2	0/1:46,47:31:93:0.505:2	0/1:53,32:30:85:0.376:2	0/1:2,89:28:91:0.978:2
chr12	117584066	rs3741467	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,60:31:166:0.361:2	0/1:101,72:31:173:0.416:2	./.	./.	./.
chr12	117669914	rs3741475	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,55:31:126:0.437:2	./.	0/1:71,53:29:124:0.427:2	./.	./.	0/1:48,66:32:114:0.579:2	./.	./.
chr12	117685270	rs1047735	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:33,41:32:74:0.554:2	0/1:26,19:32:45:0.422:2	./.	0/1:39,37:31:76:0.487:2	./.	0/1:53,46:31:99:0.465:2	./.	0/1:69,50:31:119:0.420:2	0/1:60,44:32:104:0.423:2	./.	./.
chr12	117693817	rs11068428	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:24,8:32:32:0.250:2	0/1:8,4:32:12:0.333:2	./.	0/1:18,20:31:38:0.526:2	./.	0/1:24,27:31:51:0.529:2	./.	0/1:25,27:31:52:0.519:2	0/1:18,9:32:27:0.333:2	./.	./.
chr12	117701714	rs2293054	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,15:29:32:0.469:2	0/1:8,9:28:17:0.529:2	0/1:0,10:29:10:1.00:2	0/1:25,20:30:45:0.444:2	0/1:1,57:29:58:0.983:2	0/1:34,30:30:64:0.469:2	0/1:1,58:30:59:0.983:2	0/1:18,18:29:36:0.500:2	0/1:22,26:30:48:0.542:2	./.	0/1:0,45:29:45:1.00:2
chr12	117710300	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,4:33:91:0.044:2	./.	./.	./.	./.	./.	./.	./.
chr12	117768686	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,4:29:58:0.069:2	./.	./.	./.	./.	./.	./.
chr12	117993064	rs7955803	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,21:32:44:0.477:2	./.	./.	./.	./.	./.	./.	0/1:81,91:32:172:0.529:2	./.
chr12	118020115	rs11068551	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,27:32:52:0.519:2	0/1:17,12:32:29:0.414:2	0/1:4,5:31:9:0.556:2	0/1:22,26:31:48:0.542:2	./.	0/1:1,59:31:60:0.983:2	./.	0/1:43,31:31:74:0.419:2	./.	0/1:26,27:32:53:0.509:2	0/1:24,31:32:55:0.564:2
chr12	118199286	rs617641	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,24:32:24:1.00:2	0/1:0,8:31:8:1.00:2	./.	0/1:0,36:32:36:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,45:33:45:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,44:32:44:1.00:2
chr12	118465820	rs5745873	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:33:7:0.714:2	./.	./.	./.	./.	./.	./.	./.	0/1:19,22:33:41:0.537:2
chr12	118467553	rs4767654	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,3:29:19:0.158:2	0/1:87,95:29:182:0.522:2	./.	0/1:1,134:29:135:0.993:2	0/1:84,41:29:126:0.328:2	./.	./.	0/1:86,64:29:150:0.427:2	0/1:1,188:29:189:0.995:2
chr12	118467645	rs5745879	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:32:13:0.308:2	./.	./.	./.	./.	./.	./.	./.	0/1:47,58:32:105:0.552:2
chr12	118473054	rs9788041	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,44:31:98:0.449:2	./.	0/1:0,113:30:113:1.00:2	0/1:70,70:30:140:0.500:2	./.	0/1:57,65:31:122:0.533:2	0/1:52,53:31:105:0.505:2	0/1:56,51:31:107:0.477:2
chr12	118506186	rs67405503	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:97,97:31:194:0.500:2	0/1:45,56:31:101:0.554:2	./.	0/1:3,180:30:183:0.984:2	0/1:75,47:30:122:0.385:2	./.	0/1:80,86:30:166:0.518:2	0/1:102,97:30:199:0.487:2	./.	./.	0/1:100,93:31:193:0.482:2
chr12	118509191	rs7307331	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,13:31:54:0.241:2	0/1:0,21:30:21:1.00:2	./.	0/1:34,12:31:47:0.261:2	0/1:0,31:30:31:1.00:2	./.	0/1:21,18:30:39:0.462:2	./.
chr12	118520021	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,77:32:138:0.558:2
chr12	118520170	rs7488309	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,31:31:59:0.525:2	0/1:24,30:32:54:0.556:2	0/1:0,13:30:13:1.00:2	0/1:37,38:30:75:0.507:2	0/1:27,37:31:64:0.578:2	0/1:36,27:30:63:0.429:2	0/1:25,32:31:57:0.561:2	0/1:34,33:31:67:0.493:2	0/1:31,32:32:63:0.508:2	./.	./.
chr12	118582477	rs1050625	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:30:11:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	118636879	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:185,6:28:191:0.031:2	./.	./.	./.	./.	./.	./.
chr12	118682751	rs428073	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,17:30:38:0.459:2	0/1:14,14:31:28:0.500:2	0/1:5,9:32:14:0.643:2	0/1:25,37:32:62:0.597:2	0/1:0,50:31:50:1.00:2	0/1:31,24:31:55:0.436:2	0/1:30,20:30:50:0.400:2	./.	0/1:30,38:33:68:0.559:2	0/1:0,60:32:60:1.00:2	0/1:0,52:31:52:1.00:2
chr12	118823958	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,4:31:82:0.049:2	./.	./.	./.	./.	./.	./.
chr12	118827781	rs2271007	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,49:31:112:0.438:2	./.	./.	./.	0/1:48,63:32:111:0.568:2	./.
chr12	118838472	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:32:57:0.070:2	./.	./.	./.	./.	./.
chr12	118838479	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:27:58:0.069:2	./.	./.	./.	./.	./.
chr12	119588962	rs2723880	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,17:31:31:0.548:2	0/1:14,4:32:18:0.222:2	./.	./.	0/1:2,21:31:23:0.913:2	0/1:14,18:31:32:0.563:2	0/1:20,13:32:33:0.394:2	./.	./.	0/1:18,26:31:45:0.591:2	0/1:18,17:29:35:0.486:2
chr12	119866533	rs1064319	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,15:32:43:0.349:2	0/1:37,30:32:67:0.448:2	./.	./.	./.	./.	./.
chr12	119916900	rs2519540	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,53:28:53:1.00:2	./.	./.	./.
chr12	119961587	rs78218795	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,32:31:69:0.464:2	./.	./.	./.	./.	./.	./.
chr12	120067561	rs2301653	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:30:90:1.00:2	0/1:0,72:29:72:1.00:2	0/1:0,11:31:11:1.00:2	0/1:74,52:30:126:0.413:2	0/1:67,86:29:153:0.562:2	0/1:0,163:30:163:1.00:2	0/1:5,175:30:180:0.972:2	0/1:0,140:30:140:1.00:2	0/1:71,48:31:119:0.403:2	0/1:70,53:30:123:0.431:2	0/1:55,53:30:108:0.491:2
chr12	120145987	rs56158046	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,44:32:79:0.557:2	./.	./.	./.	./.
chr12	120148363	rs35490437	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,50:32:101:0.500:2	./.
chr12	120151493	rs7311975	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,40:27:63:0.635:2	./.	./.	0/1:7,14:28:21:0.667:2	./.
chr12	120151501	rs74614893	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,19:28:40:0.475:2
chr12	120156141	rs278102	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,23:32:36:0.639:2	0/1:8,6:32:14:0.429:2	0/1:5,3:34:8:0.375:2	0/1:0,56:32:56:1.00:2	./.	0/1:16,29:31:45:0.644:2	0/1:10,28:31:38:0.737:2	./.	./.	./.	./.
chr12	120158314	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,4:34:81:0.049:2	./.	./.	./.	./.	./.	./.
chr12	120171995	rs278109	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:32:63:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,104:33:104:1.00:2	0/1:59,41:32:100:0.410:2	0/1:0,95:32:95:1.00:2	0/1:61,51:32:113:0.455:2	0/1:0,154:33:154:1.00:2	0/1:1,75:34:76:0.987:2	0/1:0,109:33:109:1.00:2	0/1:34,50:33:84:0.595:2
chr12	120189879	rs904655	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:34,37:28:71:0.521:2	0/1:30,17:30:47:0.362:2	./.	./.	0/1:65,58:29:123:0.472:2	0/1:69,32:29:101:0.317:2	./.	0/1:0,103:29:104:1.00:2	0/1:1,82:30:83:0.988:2	0/1:0,68:29:68:1.00:2	0/1:60,39:29:99:0.394:2
chr12	120189888	rs904654	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:36,37:28:73:0.507:2	0/1:32,17:30:49:0.347:2	./.	./.	0/1:66,56:29:122:0.459:2	0/1:68,32:29:100:0.320:2	./.	0/1:56,44:29:100:0.440:2	0/1:1,93:31:94:0.989:2	0/1:0,72:30:72:1.00:2	0/1:61,36:29:97:0.371:2
chr12	120263003	rs55707601	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,25:33:49:0.510:2	./.
chr12	120270637	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:33:156:0.026:2
chr12	120270638	rs17442937	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,60:31:117:0.513:2	./.
chr12	120436408	rs6490279	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,35:31:82:0.427:2	./.	./.	./.
chr12	120527791	rs2286041	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,53:32:118:0.453:2	./.	./.	./.
chr12	120535169	rs61748076	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:50,57:31:107:0.533:2	0/1:27,34:30:61:0.557:2	./.	0/1:77,60:30:137:0.438:2	./.	./.	./.	./.	./.	./.	./.
chr12	120575549	rs3864938	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,72:33:73:1.00:2	0/1:0,90:31:90:1.00:2	0/1:0,98:32:98:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,79:33:79:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,58:32:58:1.00:2
chr12	120589064	rs2286045	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,73:29:125:0.584:2	./.	./.	./.
chr12	120589160	rs2286046	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,17:31:17:1.00:2	./.	0/1:0,47:30:47:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,58:30:58:1.00:2	0/1:44,31:31:75:0.413:2	0/1:0,56:30:56:1.00:2	0/1:36,26:31:63:0.419:2	0/1:30,17:32:47:0.362:2	0/1:0,49:30:49:1.00:2
chr12	120591143	rs12312562	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,45:30:104:0.433:2	./.	./.	./.
chr12	120600880	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:31:156:0.026:2	./.	./.	./.
chr12	120608031	rs2286050	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,72:29:151:0.477:2	./.	./.	./.
chr12	120612953	rs199901349	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:16:13:0.385:2	./.	./.	./.	./.	0/1:8,6:26:14:0.429:2	0/1:7,6:18:13:0.462:2	./.
chr12	120637199	rs1045110	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,29:31:53:0.547:2	0/1:26,35:31:61:0.574:2	./.	./.	0/1:28,17:32:45:0.378:2	0/1:32,22:31:54:0.407:2	./.
chr12	120650264	rs25664	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,62:31:120:0.517:2	./.	./.	./.
chr12	120660780	rs78768932	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,70:31:149:0.470:2
chr12	120661977	rs4767884	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:28:41:1.00:2	0/1:0,27:27:27:1.00:2	0/1:0,9:28:9:1.00:2	0/1:0,77:29:77:1.00:2	0/1:0,104:28:104:1.00:2	0/1:0,65:29:65:1.00:2	0/1:50,47:28:97:0.485:2	0/1:0,101:29:101:1.00:2	0/1:51,33:29:84:0.393:2	0/1:29,33:29:62:0.532:2	0/1:0,62:29:62:1.00:2
chr12	120741382	rs61748115	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,6:32:18:0.333:2	./.	./.	./.	0/1:7,7:32:14:0.500:2	./.	./.
chr12	120750398	rs138164230	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,25:32:48:0.521:2	./.	./.	./.	./.	./.	./.	./.
chr12	120750517	rs16950058	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,28:32:78:0.359:2	./.	./.	./.	0/1:39,32:32:71:0.451:2	./.	./.
chr12	120762765	rs5637	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,84:31:189:0.444:2	0/1:110,88:32:198:0.444:2	./.	./.	0/1:100,91:32:191:0.476:2	0/1:112,79:33:191:0.414:2
chr12	120762837	rs13306723	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,83:30:178:0.466:2	./.	./.	./.	0/1:87,73:30:160:0.456:2	./.	./.
chr12	120763699	rs78096484	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:37,10:17:47:0.213:2	./.	./.	./.	0/1:59,12:15:71:0.169:2	0/1:49,10:18:59:0.169:2	0/1:73,18:15:91:0.198:2	0/1:69,12:20:81:0.148:2	./.	./.	0/1:54,7:19:62:0.115:2
chr12	120806706	rs11065094	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.
chr12	120875937	rs371574963	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,6:31:64:0.094:2	./.	./.	./.	./.	./.
chr12	120875949	rs375856274	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,6:29:63:0.095:2	./.	./.	./.	./.	./.
chr12	120876019	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:31:29:0.138:2	./.	./.
chr12	120884291	rs17431446	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:23,8:30:31:0.258:2	0/1:13,4:31:17:0.235:2	./.	./.	0/1:23,6:31:29:0.207:2	./.	./.	./.	./.	./.	./.
chr12	120884328	rs2235217	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,17:31:22:0.773:2	0/1:3,10:31:13:0.769:2	./.	0/1:6,23:31:29:0.793:2	0/1:4,14:30:18:0.778:2	0/1:0,33:29:33:1.00:2	./.	./.	0/1:13,11:31:24:0.458:2	0/1:1,10:28:11:0.909:2	0/1:3,3:32:6:0.500:2
chr12	120907271	rs11548262	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,29:31:58:0.500:2	./.	./.	./.	0/1:18,19:32:37:0.514:2
chr12	120907309	rs145350287	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,57:31:112:0.509:2	0/1:16,23:31:39:0.590:2	./.	./.	0/1:26,14:31:40:0.350:2	./.	./.
chr12	120907332	rs11548264	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:8,10:29:18:0.556:2	./.	./.	./.	0/1:44,43:29:87:0.494:2	./.	./.	./.	./.	./.	./.
chr12	120935887	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:30:74:0.054:2	./.	./.	./.	./.	./.
chr12	120954490	rs3742049	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,29:30:52:0.558:2	./.	./.	./.	0/1:40,36:30:76:0.474:2
chr12	120960057	rs503335	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,35:31:100:0.350:2	./.	./.	./.	0/1:62,76:31:138:0.551:2	0/1:56,69:32:125:0.552:2	./.	./.
chr12	120966921	rs3742052	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,13:32:31:0.419:2	0/1:8,7:32:15:0.467:2	0/1:1,2:33:3:0.667:2	0/1:30,19:32:49:0.388:2	0/1:18,18:28:36:0.500:2	0/1:0,41:32:41:1.00:2	./.	./.	0/1:16,20:31:36:0.556:2	0/1:16,16:32:32:0.500:2	0/1:23,22:32:45:0.489:2
chr12	121017171	rs7174	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,58:33:58:1.00:2	0/1:0,34:32:34:1.00:2	./.	0/1:35,49:33:84:0.583:2	0/1:0,73:31:73:1.00:2	0/1:0,52:31:52:1.00:2	0/1:1,65:32:66:0.985:2	0/1:37,43:33:80:0.538:2	0/1:33,40:34:73:0.548:2	0/1:0,37:32:37:1.00:2	0/1:0,74:33:74:1.00:2
chr12	121174899	rs3914	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:27:6:1.00:2	0/1:0,37:29:37:1.00:2	0/1:46,39:30:85:0.459:2	./.	0/1:27,19:30:46:0.413:2	0/1:39,25:29:64:0.391:2	0/1:16,19:29:35:0.543:2	0/1:20,12:30:32:0.375:2	0/1:23,12:27:35:0.343:2
chr12	121175678	rs1800556	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,51:31:91:0.560:2	./.	./.	./.	./.
chr12	121176083	rs1799958	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,9:30:18:0.500:2	0/1:59,39:32:98:0.398:2	./.	./.	./.	./.	./.	0/1:55,25:33:80:0.313:2	0/1:35,30:32:66:0.462:2
chr12	121176679	rs3915	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:31:10:1.00:2	0/1:1,73:31:74:0.986:2	0/1:59,39:31:98:0.398:2	./.	0/1:53,58:31:111:0.523:2	0/1:68,34:31:102:0.333:2	0/1:36,33:31:69:0.478:2	0/1:30,26:31:56:0.464:2	0/1:34,16:33:50:0.320:2
chr12	121206820	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,9:16:66:0.136:2	0/1:51,10:19:61:0.164:2	./.	./.	./.
chr12	121416622	rs1169289	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,6:31:14:0.429:2	0/1:0,68:32:68:1.00:2	./.	0/1:48,34:33:82:0.415:2	0/1:39,29:33:68:0.426:2	0/1:45,37:31:82:0.451:2	0/1:0,80:34:80:1.00:2	./.	0/1:2,28:29:30:0.933:2
chr12	121416650	rs1169288	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,5:28:12:0.417:2	0/1:0,67:32:67:1.00:2	./.	0/1:46,38:33:84:0.452:2	0/1:41,26:32:67:0.388:2	0/1:42,36:31:78:0.462:2	0/1:44,31:33:75:0.413:2	./.	0/1:3,31:31:34:0.912:2
chr12	121416864	rs1800574	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,26:31:43:0.605:2	./.	./.
chr12	121432117	rs56348580	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,8:28:8:1.00:2	0/1:0,7:28:7:1.00:2	0/1:0,3:34:3:1.00:2	0/1:7,5:27:12:0.417:2	0/1:0,17:28:17:1.00:2	./.	0/1:9,5:30:14:0.357:2	./.	./.	./.	./.
chr12	121434557	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:31:38:0.105:2	./.
chr12	121435342	rs2259820	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,49:32:88:0.557:2	./.	0/1:26,31:31:57:0.544:2	./.	0/1:30,76:31:106:0.717:2	0/1:36,30:32:66:0.455:2	0/1:42,27:30:69:0.391:2	0/1:0,44:31:44:1.00:2
chr12	121435427	rs2464196	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,47:30:108:0.439:2	./.	0/1:57,58:30:115:0.504:2	./.	0/1:49,59:30:108:0.546:2	0/1:40,43:31:83:0.518:2	0/1:47,38:30:85:0.447:2	0/1:4,98:30:104:0.961:2
chr12	121435475	rs2464195	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:121,73:31:194:0.376:2	./.	0/1:101,92:30:193:0.477:2	./.	0/1:84,102:31:186:0.548:2	0/1:3,133:32:136:0.978:2	0/1:75,70:31:145:0.483:2	0/1:1,135:32:136:0.993:2
chr12	121435587	rs2259816	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:113,82:31:195:0.421:2	./.	0/1:117,79:30:196:0.403:2	./.	0/1:115,76:30:191:0.398:2	0/1:0,180:32:180:1.00:2	0/1:89,81:30:170:0.476:2	0/1:1,157:31:158:0.994:2
chr12	121437114	rs55834942	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,81:32:152:0.536:2	./.	0/1:27,63:32:90:0.700:2	./.	./.	./.	./.
chr12	121437382	rs1169305	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,15:30:15:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,25:29:25:1.00:2	0/1:1,26:31:27:0.963:2	0/1:0,19:31:19:1.00:2	0/1:0,25:30:25:1.00:2	0/1:2,19:32:21:0.905:2	0/1:0,20:31:20:1.00:2	0/1:1,24:31:25:0.960:2
chr12	121437410	rs137853242	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:32:7:0.429:2
chr12	121442199	rs3751151	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,53:32:128:0.414:2	./.	0/1:98,76:32:174:0.437:2	0/1:86,64:32:150:0.427:2	./.	./.	./.
chr12	121442214	rs3751150	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,52:30:131:0.397:2	./.	./.	./.
chr12	121442241	rs73214128	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,55:30:134:0.410:2	./.	./.
chr12	121442883	rs11537856	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,15:32:33:0.455:2	./.	./.
chr12	121454148	rs11537857	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,7:33:19:0.368:2	./.	./.
chr12	121454257	rs2258227	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:0,15:31:15:1.00:2	0/1:3,4:32:7:0.571:2	0/1:1,69:31:70:0.986:2	0/1:0,87:31:87:1.00:2	0/1:49,24:32:73:0.329:2	0/1:57,39:32:96:0.406:2	0/1:0,103:32:103:1.00:2	0/1:0,71:33:71:1.00:2	0/1:36,24:33:60:0.400:2	0/1:0,40:33:40:1.00:2
chr12	121458400	rs12819210	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,14:30:32:0.438:2	0/1:16,14:32:30:0.467:2	./.	./.	0/1:8,15:32:23:0.652:2	./.
chr12	121471337	rs3213545	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,8:32:13:0.615:2	0/1:45,29:30:74:0.392:2	./.	0/1:45,17:30:62:0.274:2	./.	0/1:43,32:31:76:0.427:2	0/1:30,41:32:71:0.577:2	0/1:32,32:32:64:0.500:2	0/1:0,68:31:68:1.00:2
chr12	121592689	rs17525809	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,65:29:174:0.374:2	./.	./.	./.
chr12	121600238	rs28360447	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,32:34:71:0.451:2	./.	./.
chr12	121600253	rs208294	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:33:49:1.00:2	0/1:0,20:33:20:1.00:2	0/1:11,8:33:19:0.421:2	0/1:23,27:33:50:0.540:2	0/1:0,58:32:58:1.00:2	0/1:26,38:33:64:0.594:2	0/1:0,47:32:47:1.00:2	0/1:0,73:33:73:1.00:2	./.	0/1:14,23:34:37:0.622:2	0/1:35,38:33:73:0.521:2
chr12	121605355	rs7958311	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:41,37:32:78:0.474:2	0/1:24,21:32:45:0.467:2	./.	0/1:75,67:30:142:0.472:2	0/1:104,91:31:196:0.467:2	0/1:77,68:31:145:0.469:2	./.	0/1:107,74:32:181:0.409:2	./.	0/1:46,38:31:85:0.452:2	./.
chr12	121614934	rs7132846	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,54:32:135:0.409:2
chr12	121615103	rs1718119	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:60,45:30:105:0.429:2	0/1:34,32:31:66:0.485:2	0/1:8,12:30:20:0.600:2	./.	0/1:49,56:31:105:0.533:2	0/1:58,71:31:129:0.550:2	./.	0/1:90,51:31:142:0.362:2	0/1:0,114:31:114:1.00:2	./.	./.
chr12	121615131	rs2230911	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,45:32:108:0.417:2
chr12	121622196	rs2230912	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,10:29:20:0.500:2	./.	./.	0/1:1,14:30:15:0.933:2	./.	./.
chr12	121622239	rs3751144	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,11:31:21:0.524:2
chr12	121622304	rs3751143	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,10:29:32:0.313:2	./.	./.	0/1:16,18:30:34:0.529:2	./.	./.	0/1:13,14:31:27:0.519:2	0/1:13,12:29:25:0.480:2
chr12	121622419	rs3751142	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,16:31:34:0.485:2
chr12	121622520	rs1653624	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:30:61:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,100:30:100:1.00:2	0/1:0,85:30:85:1.00:2	0/1:0,92:30:92:1.00:2	0/1:0,107:31:107:1.00:2	0/1:0,85:30:85:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,60:31:60:1.00:2	0/1:1,77:31:78:0.987:2
chr12	121622563	rs1621388	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:36,38:32:74:0.514:2	0/1:20,15:32:35:0.429:2	0/1:14,9:32:23:0.391:2	./.	0/1:57,42:31:99:0.424:2	0/1:55,42:32:97:0.433:2	./.	0/1:49,48:31:97:0.495:2	0/1:0,132:33:132:1.00:2	./.	./.
chr12	121647974	rs200492184	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.
chr12	121659917	rs25642	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:21,18:31:39:0.462:2	0/1:18,10:32:29:0.357:2	./.	./.	0/1:27,10:30:37:0.270:2	./.	./.	./.	./.	./.	./.
chr12	121660787	rs25643	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:61,33:29:94:0.351:2	0/1:35,30:30:65:0.462:2	0/1:11,11:30:22:0.500:2	./.	0/1:5,189:30:194:0.974:2	0/1:86,84:30:170:0.494:2	./.	./.	0/1:1,174:31:175:0.994:2	./.	0/1:65,73:29:138:0.529:2
chr12	121666646	rs25644	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,49:31:90:0.544:2
chr12	121691088	rs3815990	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:68,30:30:98:0.306:2	0/1:21,19:30:40:0.475:2	./.	./.	0/1:103,57:30:160:0.356:2	./.	./.	./.	./.	./.	./.
chr12	121691096	rs1132780	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:32:195:0.021:2	./.	./.	0/1:74,52:31:126:0.413:2
chr12	121701681	rs2230776	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:20,12:33:32:0.375:2	0/1:12,14:32:26:0.538:2	./.	0/1:26,29:30:55:0.527:2	./.	./.	./.	0/1:34,38:30:72:0.528:2	./.	./.	./.
chr12	121707321	rs1109453	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,59:32:60:0.983:2	./.	0/1:46,37:33:83:0.446:2	./.	./.
chr12	121712077	rs3817190	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:5,4:33:9:0.444:2	./.	./.	0/1:3,3:31:6:0.500:2	./.	./.	0/1:0,8:30:8:1.00:2	0/1:1,3:30:4:0.750:2	0/1:8,4:34:12:0.333:2	./.	./.
chr12	121712301	rs28360477	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:13,17:32:30:0.567:2	0/1:7,9:31:16:0.563:2	./.	0/1:10,12:31:22:0.545:2	./.	./.	./.	./.	./.	./.	./.
chr12	121783698	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:196,4:33:200:0.020:2	./.	./.	./.	./.
chr12	121790072	rs76804421	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:33:129:0.031:2	./.
chr12	121840634	rs11831315	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,18:29:45:0.400:2	./.	./.	./.	./.	./.	./.
chr12	121878659	rs1064951	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:29:9:0.333:2	./.	0/1:36,22:29:58:0.379:2	0/1:15,30:29:45:0.667:2	0/1:2,47:29:49:0.959:2	./.	0/1:29,15:31:45:0.341:2	./.	0/1:21,14:30:35:0.400:2
chr12	121880500	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,4:32:20:0.200:2	./.	./.	./.	./.	./.
chr12	121880520	rs3751131	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,4:29:10:0.400:2	0/1:12,18:28:30:0.600:2	0/1:0,17:31:17:1.00:2	./.	0/1:9,11:31:20:0.550:2	./.	0/1:3,9:30:12:0.750:2
chr12	121881848	rs10849885	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:29:7:0.571:2	./.	0/1:64,27:31:91:0.297:2	0/1:37,33:31:70:0.471:2	0/1:1,76:31:77:0.987:2	./.	0/1:43,37:32:80:0.463:2	./.	0/1:45,30:30:75:0.400:2
chr12	121987524	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:32:144:0.028:2	./.	./.	./.	./.	./.
chr12	122018761	rs191586330	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,26:30:50:0.520:2	./.	./.	./.	./.
chr12	122064871	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:32:148:0.027:2	./.	./.
chr12	122079189	rs3741595	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,64:32:65:0.985:2	0/1:0,38:32:38:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	122079348	rs3741597	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,40:30:98:0.408:2	./.	./.	./.
chr12	122079429	rs3825174	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,70:32:175:0.400:2	./.	./.	./.
chr12	122079441	rs3825175	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,71:30:71:1.00:2	0/1:0,51:29:51:1.00:2	0/1:0,16:30:16:1.00:2	./.	./.	./.	0/1:66,60:28:126:0.476:2	0/1:90,62:30:152:0.408:2	0/1:79,62:29:142:0.440:2	./.	0/1:57,52:27:109:0.477:2
chr12	122092181	rs11043312	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:31:5:1.00:2	./.	./.	./.	./.	./.	0/1:16,7:31:23:0.304:2	./.	./.
chr12	122092327	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.	./.	./.
chr12	122186268	rs28651018	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:62,66:31:128:0.516:2	0/1:44,32:32:76:0.421:2	./.	0/1:0,187:30:187:1.00:2	0/1:1,186:31:187:0.995:2	0/1:111,80:30:192:0.419:2	0/1:0,180:31:180:1.00:2	0/1:2,185:31:187:0.989:2	0/1:101,90:31:191:0.471:2	0/1:0,134:31:134:1.00:2	0/1:98,72:31:170:0.424:2
chr12	122186317	rs28655666	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:57,61:32:118:0.517:2	0/1:40,31:31:71:0.437:2	./.	0/1:2,163:31:166:0.988:2	0/1:1,159:31:160:0.994:2	0/1:82,64:30:146:0.438:2	0/1:0,160:30:161:1.00:2	0/1:2,157:31:159:0.987:2	0/1:86,70:32:156:0.449:2	0/1:1,129:31:130:0.992:2	0/1:86,66:31:152:0.434:2
chr12	122209438	rs201837879	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2	./.	./.
chr12	122231101	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,5:28:85:0.059:2	./.	./.	./.	./.	./.	./.	./.
chr12	122242666	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.	./.	./.	./.	./.
chr12	122243905	rs1168666	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,86:31:87:0.989:2	0/1:1,48:32:49:0.980:2	0/1:0,12:30:12:1.00:2	0/1:0,120:31:120:1.00:2	0/1:83,51:30:134:0.381:2	0/1:0,123:31:123:1.00:2	0/1:88,65:31:153:0.425:2	0/1:4,152:31:156:0.974:2	0/1:0,111:32:111:1.00:2	0/1:1,104:32:105:0.990:2	0/1:0,105:31:105:1.00:2
chr12	122248329	rs190344718	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,12:32:33:0.364:2	./.	./.
chr12	122248582	rs895952	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,21:32:21:1.00:2	0/1:0,11:29:11:1.00:2	./.	0/1:0,9:32:9:1.00:2	0/1:7,9:31:16:0.563:2	0/1:0,21:31:21:1.00:2	./.	0/1:1,15:31:16:0.938:2	0/1:0,12:32:12:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,6:31:6:1.00:2
chr12	122255096	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,23:30:44:0.523:2	./.	./.	./.	./.	./.
chr12	122261456	rs3741593	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,8:32:16:0.500:2	0/1:6,6:30:12:0.500:2	./.	0/1:10,11:31:21:0.524:2	0/1:16,14:30:30:0.467:2	0/1:18,13:28:31:0.419:2	./.	0/1:17,12:32:29:0.414:2	0/1:7,22:32:29:0.759:2	0/1:0,23:31:23:1.00:2	0/1:7,8:31:15:0.533:2
chr12	122295335	rs1154510	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:30:25:1.00:2	0/1:0,12:29:12:1.00:2	0/1:0,5:29:5:1.00:2	0/1:18,10:29:28:0.357:2	0/1:0,35:30:35:1.00:2	0/1:22,18:29:40:0.450:2	0/1:0,39:30:39:1.00:2	0/1:35,20:30:55:0.364:2	0/1:0,23:29:23:1.00:2	0/1:0,27:30:27:1.00:2	0/1:25,12:28:37:0.324:2
chr12	122326812	rs2230681	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:30:48:1.00:2	0/1:1,25:31:26:0.962:2	0/1:0,12:31:12:1.00:2	0/1:46,42:31:88:0.477:2	0/1:0,107:31:107:1.00:2	0/1:54,39:31:94:0.419:2	0/1:0,94:32:94:1.00:2	0/1:82,54:31:136:0.397:2	0/1:0,86:33:86:1.00:2	0/1:0,65:31:65:1.00:2	0/1:38,23:31:61:0.377:2
chr12	122353796	rs14259	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,20:32:43:0.465:2	./.	0/1:17,26:32:43:0.605:2	./.	0/1:28,40:32:68:0.588:2	./.	0/1:22,26:33:48:0.542:2	0/1:32,30:32:62:0.484:2
chr12	122359491	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,4:30:55:0.073:2	./.	./.	./.	./.	./.	./.
chr12	122369762	rs7313748	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,83:32:183:0.454:2	./.	0/1:112,85:31:197:0.431:2	./.	0/1:97,95:32:192:0.495:2	./.	0/1:113,79:33:192:0.411:2	0/1:89,90:32:179:0.503:2
chr12	122372176	rs78614343	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,19:31:36:0.528:2	./.	./.	./.	./.	0/1:31,18:32:49:0.367:2	./.	./.
chr12	122372183	rs77540055	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,20:32:39:0.513:2	./.	./.	./.	./.	0/1:34,22:32:56:0.393:2	./.	./.
chr12	122380488	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:31:93:0.043:2	./.	./.	./.
chr12	122380513	rs140977068	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,22:32:41:0.537:2
chr12	122386948	rs78910014	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,34:33:82:0.415:2	./.	./.	./.	./.	0/1:55,37:34:92:0.402:2	./.	./.
chr12	122392038	rs11043265	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,28:31:59:0.475:2	0/1:29,15:31:44:0.341:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	122396395	rs17852561	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,38:31:72:0.528:2	./.	0/1:44,30:31:74:0.405:2	./.	0/1:40,38:30:78:0.487:2	./.	./.	0/1:52,39:30:91:0.429:2
chr12	122405912	rs1169081	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,16:31:31:0.533:2	./.	0/1:29,18:31:47:0.383:2	./.	0/1:33,29:32:62:0.468:2	./.	./.	0/1:36,37:32:73:0.507:2
chr12	122413196	rs77422261	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,49:33:88:0.557:2	0/1:24,18:32:42:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	122468687	rs2272132	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,52:30:130:0.400:2	./.	./.	./.	./.	0/1:79,63:32:142:0.444:2	./.	./.
chr12	122481879	rs34821485	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,11:31:32:0.344:2	0/1:17,12:30:29:0.414:2
chr12	122497001	rs28629903	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:24,11:33:35:0.314:2	0/1:8,13:32:21:0.619:2	0/1:0,14:33:14:1.00:2	./.	0/1:0,31:32:31:1.00:2	./.	0/1:26,17:33:43:0.395:2	0/1:32,32:33:64:0.500:2	./.	0/1:18,23:33:41:0.561:2	0/1:35,25:33:60:0.417:2
chr12	122617989	rs7978353	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:18,8:32:26:0.308:2	0/1:12,12:31:24:0.500:2	0/1:8,6:31:14:0.429:2	./.	0/1:0,62:31:62:1.00:2	./.	0/1:41,21:32:62:0.339:2	0/1:1,76:31:77:0.987:2	./.	0/1:20,25:32:45:0.556:2	./.
chr12	122618131	rs36045144	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,46:25:48:0.958:2	./.	./.	0/1:32,22:27:55:0.407:2	./.	./.	./.
chr12	122623000	rs4758686	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:32,23:31:55:0.418:2	0/1:16,19:28:35:0.543:2	0/1:0,7:30:7:1.00:2	./.	0/1:0,88:30:88:1.00:2	./.	0/1:45,61:30:106:0.575:2	0/1:37,31:28:68:0.456:2	./.	0/1:22,26:30:48:0.542:2	0/1:18,20:29:38:0.526:2
chr12	122657271	rs7974857	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,12:29:19:0.632:2	./.	0/1:107,67:31:174:0.385:2	./.	./.	./.	./.	./.	0/1:83,93:32:176:0.528:2
chr12	122658492	rs56719421	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,25:31:73:0.342:2	./.
chr12	122674758	rs4758651	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,54:30:102:0.529:2	0/1:34,29:31:63:0.460:2	0/1:5,7:30:12:0.583:2	0/1:61,63:31:124:0.508:2	0/1:1,178:31:179:0.994:2	0/1:89,77:30:166:0.464:2	0/1:0,148:31:148:1.00:2	0/1:90,79:31:169:0.467:2	0/1:1,151:31:152:0.993:2	0/1:39,54:30:93:0.581:2	0/1:0,61:31:62:1.00:2
chr12	122674780	rs11060094	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,46:30:109:0.422:2	0/1:42,35:31:77:0.455:2	0/1:9,8:30:17:0.471:2	0/1:80,68:31:148:0.459:2	./.	0/1:95,83:30:178:0.466:2	./.	0/1:92,97:30:189:0.513:2	./.	0/1:66,60:31:126:0.476:2	./.
chr12	122676013	rs11060167	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,23:29:74:0.311:2	./.	./.	./.	./.	./.	./.	0/1:40,26:29:66:0.394:2
chr12	122689161	rs12827843	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,11:26:25:0.440:2	./.	./.	./.	./.	./.	./.	0/1:8,7:27:15:0.467:2
chr12	122689181	rs7136356	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,14:31:33:0.424:2	./.	./.	./.	./.	./.	0/1:11,10:29:21:0.476:2	0/1:10,7:32:17:0.412:2
chr12	122689244	rs12828049	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,14:29:36:0.389:2	0/1:16,10:26:26:0.385:2	./.	./.	./.	./.	./.	0/1:13,7:27:20:0.350:2
chr12	122691738	rs4758675	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:32:58:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,75:32:75:1.00:2	0/1:1,64:32:65:0.985:2	0/1:0,55:33:55:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,45:32:45:1.00:2
chr12	122693085	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:29:85:0.047:2	./.
chr12	122745814	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,37:30:114:0.325:2	./.	./.	./.	./.	./.
chr12	122763670	rs17881033	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,4:34:18:0.222:2	0/1:4,9:33:13:0.692:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	122812503	rs1129167	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,11:32:15:0.733:2	0/1:74,51:32:125:0.408:2	0/1:2,101:31:103:0.981:2	0/1:53,53:31:106:0.500:2	0/1:68,49:32:117:0.419:2	0/1:54,41:31:95:0.432:2	0/1:2,107:33:109:0.982:2	0/1:32,40:32:72:0.556:2	./.
chr12	122812693	rs77289752	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:172,11:17:183:0.060:2	./.	./.	0/1:161,16:13:177:0.090:2	0/1:151,15:13:166:0.090:2	0/1:157,17:16:175:0.098:2	0/1:160,22:12:182:0.121:2	0/1:167,19:14:186:0.102:2	0/1:162,18:18:180:0.100:2	0/1:146,30:13:176:0.170:2	0/1:142,22:17:164:0.134:2
chr12	122812697	rs200453518	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:161,17:14:178:0.096:2	./.	0/1:18,6:17:24:0.250:2	0/1:150,25:16:175:0.143:2	0/1:131,27:12:158:0.171:2	0/1:143,32:17:175:0.183:2	0/1:143,36:13:179:0.201:2	0/1:152,30:15:182:0.165:2	./.	0/1:135,34:12:170:0.201:2	0/1:138,25:16:164:0.153:2
chr12	122812699	.	A	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:163,19:14:182:0.104:2	./.	./.	./.	./.	0/1:149,27:12:176:0.153:2	0/1:157,19:11:176:0.108:2	0/1:161,24:13:186:0.130:2	./.	0/1:148,24:13:172:0.140:2	./.
chr12	122812704	rs201510085	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:167,19:17:186:0.102:2	./.	./.	0/1:156,22:16:178:0.124:2	0/1:135,29:15:164:0.177:2	0/1:142,33:14:175:0.189:2	0/1:141,34:13:175:0.194:2	0/1:156,33:16:189:0.175:2	0/1:169,19:12:188:0.101:2	0/1:129,43:16:172:0.250:2	0/1:146,22:16:168:0.131:2
chr12	122812709	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:149,16:16:165:0.097:2	./.	./.	0/1:133,17:15:150:0.113:2	./.	./.	0/1:123,15:18:138:0.109:2	./.
chr12	122817580	rs17883517	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,87:32:188:0.463:2	./.	0/1:100,83:32:183:0.454:2	./.	./.	./.	./.	./.
chr12	122825398	rs61954403	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,51:31:100:0.515:2	./.	./.	./.	./.	./.	./.
chr12	122845695	rs200973285	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:44,7:23:51:0.137:2	./.	./.	0/1:68,9:17:77:0.117:2	./.	0/1:48,12:16:61:0.200:2	0/1:50,13:10:63:0.206:2	0/1:69,13:17:82:0.159:2	0/1:80,13:12:93:0.140:2	./.	./.
chr12	122845698	rs79909185	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,29:20:71:0.408:2	./.	./.	0/1:66,44:19:110:0.400:2	0/1:59,46:18:105:0.438:2	0/1:42,35:18:77:0.455:2	0/1:43,42:17:85:0.494:2	0/1:63,51:18:114:0.447:2	0/1:85,25:20:110:0.227:2	0/1:48,38:18:86:0.442:2	0/1:44,26:21:70:0.371:2
chr12	122862233	rs139445702	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,19:32:64:0.302:2	./.
chr12	123006792	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:33:121:0.033:2	./.
chr12	123030788	rs7968222	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,30:31:78:0.385:2	./.	./.	./.	./.	./.	0/1:55,32:30:87:0.368:2	./.
chr12	123032074	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,6:33:60:0.100:2	./.
chr12	123035913	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:33:116:0.034:2
chr12	123057708	rs191772462	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:31:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	123057792	rs61751322	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,24:30:38:0.632:2	./.	./.	./.	./.	./.	./.
chr12	123070218	rs36117464	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,64:31:135:0.474:2	./.
chr12	123087442	rs7307735	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:31:5:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,12:32:12:1.00:2	0/1:10,9:32:19:0.474:2	0/1:6,8:32:14:0.571:2	./.	0/1:2,30:32:32:0.938:2	0/1:12,13:31:25:0.520:2	0/1:0,35:32:35:1.00:2
chr12	123100056	rs201035166	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,4:30:17:0.235:2	./.	./.	./.
chr12	123102921	rs11837038	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,48:32:110:0.436:2	./.	./.	./.	./.	./.	0/1:55,49:32:104:0.471:2	./.
chr12	123103016	rs7301589	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,5:33:11:0.455:2	0/1:0,34:32:34:1.00:2	./.	0/1:44,18:31:62:0.290:2	./.	./.	./.	0/1:34,13:32:47:0.277:2	0/1:1,54:31:55:0.982:2
chr12	123103021	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,7:22:48:0.146:2
chr12	123105143	rs2270775	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:31:6:0.667:2	0/1:25,16:32:41:0.390:2	./.	0/1:25,21:31:46:0.457:2	./.	./.	./.	./.	0/1:0,58:32:58:1.00:2
chr12	123186880	rs28682471	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:185,6:31:191:0.031:2	./.	./.	./.	0/1:149,24:30:173:0.139:2	0/1:169,15:30:184:0.082:2	0/1:176,14:29:190:0.074:2	0/1:182,10:30:192:0.052:2	./.	0/1:188,8:29:196:0.041:2	./.
chr12	123186900	rs7314976	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,6:32:193:0.031:2	0/1:180,8:31:188:0.043:2	./.	0/1:183,8:26:191:0.042:2	./.	./.
chr12	123187073	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,5:31:181:0.028:2
chr12	123187239	rs676823	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:140,7:31:147:0.048:2	0/1:79,7:31:86:0.081:2	0/1:15,3:32:18:0.167:2	0/1:104,13:32:117:0.111:2	0/1:90,6:32:97:0.063:2	0/1:123,7:31:131:0.054:2	0/1:120,13:30:133:0.098:2	0/1:127,11:33:138:0.080:2	0/1:127,16:32:143:0.112:2	0/1:94,6:32:100:0.060:2	./.
chr12	123187258	rs470923	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,4:33:112:0.036:2	./.	./.	./.	./.	./.	./.	./.
chr12	123187276	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:31:117:0.034:2	./.	./.	./.
chr12	123187407	rs151172149	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,5:32:95:0.053:2	./.	0/1:77,4:31:81:0.049:2	./.	./.
chr12	123187751	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,6:28:62:0.097:2	./.	./.	./.	./.
chr12	123200158	rs470535	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:52,4:30:56:0.071:2	./.	0/1:125,8:33:133:0.060:2	./.	./.	./.	./.	./.	./.	./.
chr12	123200247	rs56308926	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,93:33:93:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,102:33:102:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,90:32:90:1.00:2	0/1:2,125:32:128:0.984:2	0/1:0,120:34:120:1.00:2	0/1:0,104:32:104:1.00:2	0/1:106,50:33:156:0.321:2
chr12	123200334	rs116821988	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:97,13:32:110:0.118:2	0/1:67,9:33:76:0.118:2	./.	0/1:2,18:32:20:0.900:2	./.	0/1:191,7:33:198:0.035:2	0/1:190,6:31:196:0.031:2	0/1:131,19:31:150:0.127:2	0/1:108,23:33:131:0.176:2	0/1:117,22:32:139:0.158:2	0/1:153,17:30:170:0.100:2
chr12	123200353	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,7:30:191:0.037:2	./.	./.	./.	./.	./.
chr12	123200354	rs200905183	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,78:32:186:0.419:2	0/1:106,81:32:187:0.433:2	./.	0/1:25,98:33:123:0.797:2	./.	./.
chr12	123200527	rs118091133	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:67,6:28:73:0.082:2	0/1:69,5:31:74:0.068:2	0/1:0,2:33:2:1.00:2	0/1:1,10:31:11:0.909:2	./.	0/1:116,5:30:121:0.041:2	0/1:9,9:31:18:0.500:2	0/1:133,13:30:146:0.089:2	0/1:0,14:30:15:1.00:2	0/1:88,8:29:96:0.083:2	./.
chr12	123200693	rs17884481	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,58:32:128:0.453:2	0/1:52,26:31:78:0.333:2	0/1:1,20:32:21:0.952:2	0/1:6,120:32:126:0.952:2	0/1:85,59:32:144:0.410:2	0/1:80,55:32:136:0.407:2	0/1:8,109:32:117:0.932:2	0/1:89,76:32:165:0.461:2	0/1:9,130:33:139:0.935:2	0/1:75,62:33:137:0.453:2	./.
chr12	123200768	rs1798192	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,41:32:94:0.436:2	0/1:32,22:31:54:0.407:2	0/1:0,18:33:18:1.00:2	0/1:1,148:32:149:0.993:2	0/1:94,59:32:153:0.386:2	0/1:65,69:32:134:0.515:2	0/1:1,147:32:148:0.993:2	0/1:76,70:32:146:0.479:2	0/1:0,115:33:115:1.00:2	0/1:58,47:31:105:0.448:2	./.
chr12	123200937	rs1696352	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,27:32:54:0.500:2	0/1:13,19:31:32:0.594:2	0/1:0,8:32:8:1.00:2	0/1:0,82:32:82:1.00:2	0/1:35,46:32:81:0.568:2	0/1:47,45:32:92:0.489:2	0/1:0,83:32:83:1.00:2	0/1:39,43:32:82:0.524:2	0/1:0,81:33:81:1.00:2	0/1:31,28:33:59:0.475:2	./.
chr12	123201291	rs3825156	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,13:28:13:1.00:2	./.	0/1:95,63:29:160:0.399:2	0/1:50,56:28:106:0.528:2	0/1:2,130:29:132:0.985:2	0/1:79,77:28:156:0.494:2	0/1:0,118:29:118:1.00:2	0/1:55,41:28:96:0.427:2	./.
chr12	123214121	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,47:31:102:0.461:2	./.	./.	./.	./.	./.	./.	./.
chr12	123286287	rs75175797	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:32:5:0.800:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	123297902	rs55716280	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	123333065	rs2135014	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:31:56:1.00:2	0/1:0,55:32:55:1.00:2	0/1:14,9:29:23:0.391:2	0/1:0,115:31:115:1.00:2	0/1:0,166:31:167:1.00:2	0/1:0,132:31:132:1.00:2	0/1:1,160:32:161:0.994:2	0/1:2,154:31:156:0.987:2	0/1:0,136:32:136:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,73:31:73:1.00:2
chr12	123342670	rs369312749	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,9:30:13:0.692:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	123344021	rs2271051	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,8:32:21:0.381:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	123345509	rs34149579	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,57:31:133:0.429:2	./.	./.	./.	./.
chr12	123345736	rs10847910	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:29:25:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,4:29:4:1.00:2	0/1:0,26:31:27:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,28:29:28:1.00:2	0/1:1,25:31:26:0.962:2	0/1:0,28:32:28:1.00:2	0/1:0,18:30:18:1.00:2	0/1:1,25:30:26:0.962:2
chr12	123435081	rs138231319	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,19:31:47:0.404:2	./.	./.
chr12	123444507	rs58843120	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,28:31:55:0.509:2	0/1:14,19:31:33:0.576:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	123460962	rs884956	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,24:33:53:0.453:2	0/1:18,15:32:33:0.455:2	0/1:4,3:33:7:0.429:2	0/1:60,33:32:93:0.355:2	0/1:48,34:32:82:0.415:2	0/1:0,54:32:54:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,76:33:76:1.00:2	0/1:0,79:33:79:1.00:2	0/1:22,30:31:52:0.577:2	0/1:39,26:33:65:0.400:2
chr12	123461284	rs36004829	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:32:10:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	123461303	rs187169897	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,36:30:105:0.343:2	./.	./.
chr12	123467118	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:135,4:33:139:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr12	123471094	rs12811109	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,32:31:77:0.416:2	0/1:48,54:30:102:0.529:2	./.	./.	./.	./.	0/1:40,21:32:61:0.344:2	0/1:18,19:32:37:0.514:2
chr12	123471207	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,4:32:31:0.129:2
chr12	123480034	rs61751326	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,13:30:21:0.619:2	./.	./.	./.	./.	./.	./.	./.	./.
chr12	123498382	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,4:33:51:0.078:2	./.	./.	./.	./.	./.	./.	./.
chr12	123645803	rs1051431	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:33:60:1.00:2	0/1:1,42:32:43:0.977:2	0/1:0,17:31:17:1.00:2	0/1:52,29:32:81:0.358:2	0/1:18,37:31:55:0.673:2	0/1:0,45:31:45:1.00:2	0/1:42,31:32:73:0.425:2	0/1:2,69:32:71:0.972:2	0/1:0,75:32:75:1.00:2	0/1:33,23:32:56:0.411:2	0/1:48,47:33:95:0.495:2
chr12	123664514	rs1727301	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,52:31:126:0.413:2	./.	0/1:58,33:30:91:0.363:2	./.	0/1:50,36:30:86:0.419:2	0/1:91,60:31:151:0.397:2	./.	0/1:76,56:31:132:0.424:2
chr12	123665695	rs1727306	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,59:32:60:0.983:2	0/1:0,65:32:65:1.00:2	0/1:0,14:33:14:1.00:2	0/1:70,56:33:126:0.444:2	0/1:45,31:32:76:0.408:2	0/1:0,100:33:100:1.00:2	0/1:57,48:34:105:0.457:2	0/1:2,117:33:119:0.983:2	0/1:0,120:33:120:1.00:2	0/1:37,44:33:81:0.543:2	0/1:54,36:34:90:0.400:2
chr12	123687307	rs189088477	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,90:31:197:0.457:2	./.	./.	./.	./.	./.	./.	./.
chr12	123687482	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,9:34:155:0.058:2	./.	./.
chr12	123705962	rs36121382	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,21:32:49:0.429:2	0/1:8,23:31:31:0.742:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	123738265	rs78651634	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,9:31:12:0.750:2	./.	./.	./.	0/1:59,34:32:93:0.366:2	./.	./.	0/1:57,34:31:91:0.374:2	./.
chr12	123738494	rs2280424	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,10:32:23:0.435:2	0/1:9,6:29:15:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	123746357	rs4759416	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:33:35:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,5:33:5:1.00:2	0/1:39,22:32:61:0.361:2	0/1:40,29:32:69:0.420:2	0/1:0,48:33:48:1.00:2	0/1:33,27:33:60:0.450:2	0/1:0,63:32:63:1.00:2	0/1:0,45:34:45:1.00:2	0/1:26,16:31:42:0.381:2	0/1:18,30:33:48:0.625:2
chr12	123794104	rs3825141	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,11:32:24:0.458:2	0/1:12,6:31:18:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	123799938	rs61751327	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,18:32:51:0.353:2	0/1:21,8:32:29:0.276:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	123799974	rs6488868	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,56:30:56:1.00:2	0/1:1,30:29:31:0.968:2	./.	0/1:41,25:30:66:0.379:2	0/1:28,18:28:46:0.391:2	0/1:0,83:30:83:1.00:2	0/1:28,19:29:47:0.404:2	0/1:1,61:30:62:0.984:2	0/1:0,83:30:83:1.00:2	0/1:34,19:31:53:0.358:2	0/1:32,24:30:56:0.429:2
chr12	123806219	rs1060105	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,87:31:195:0.446:2	0/1:92,71:31:163:0.436:2	./.	0/1:112,81:32:193:0.420:2	./.	./.	0/1:97,80:32:177:0.452:2	0/1:106,88:31:194:0.454:2
chr12	123810873	rs61388686	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,14:33:31:0.452:2	0/1:8,9:29:17:0.529:2	0/1:2,5:32:7:0.714:2	0/1:11,18:32:29:0.621:2	0/1:24,19:31:43:0.442:2	0/1:0,25:30:25:1.00:2	0/1:19,7:32:26:0.269:2	0/1:0,32:31:32:1.00:2	0/1:0,32:31:32:1.00:2	0/1:13,10:29:23:0.435:2	0/1:25,16:31:41:0.390:2
chr12	123825559	rs12322888	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,31:32:79:0.392:2	0/1:22,8:30:30:0.267:2	./.	0/1:44,27:32:71:0.380:2	./.	./.	0/1:31,34:30:65:0.523:2	0/1:41,23:33:65:0.359:2
chr12	123892095	rs61955126	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:31:84:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	123892235	rs61955128	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,6:32:30:0.200:2	./.	0/1:28,9:30:37:0.243:2	0/1:38,5:29:43:0.116:2	./.	./.	./.	./.
chr12	123950408	rs28728202	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,10:31:22:0.455:2	./.	./.	./.	./.	./.
chr12	123950556	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:30:35:0.114:2	./.
chr12	124008073	rs2292500	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:33:80:1.00:2	0/1:0,80:32:80:1.00:2	0/1:11,17:33:28:0.607:2	0/1:0,165:32:165:1.00:2	0/1:0,173:32:173:1.00:2	0/1:0,158:32:158:1.00:2	0/1:0,193:33:193:1.00:2	0/1:100,96:32:196:0.490:2	0/1:0,134:33:134:1.00:2	0/1:0,108:33:108:1.00:2	0/1:0,104:33:104:1.00:2
chr12	124017850	rs28492040	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:9,5:31:14:0.357:2	0/1:1,5:31:6:0.833:2	./.	./.	./.	./.	0/1:1,10:31:11:0.909:2	./.	./.	0/1:0,5:32:5:1.00:2	0/1:4,3:33:7:0.429:2
chr12	124069213	rs786446	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:33:25:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,44:33:44:1.00:2	0/1:0,37:33:37:1.00:2	0/1:0,43:32:43:1.00:2
chr12	124090453	rs786436	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,125:30:125:1.00:2	0/1:0,92:29:92:1.00:2	0/1:0,22:29:22:1.00:2	0/1:1,141:29:142:0.993:2	0/1:0,153:29:153:1.00:2	0/1:0,192:29:192:1.00:2	0/1:0,157:30:157:1.00:2	0/1:0,194:29:194:1.00:2	0/1:0,189:30:189:1.00:2	0/1:0,134:30:134:1.00:2	0/1:0,147:30:147:1.00:2
chr12	124097766	rs11057306	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,45:32:96:0.469:2	./.	./.	./.
chr12	124102356	rs142573698	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:101,82:30:183:0.448:2	./.	./.	./.	./.	./.	./.
chr12	124104049	rs15587	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:29,16:32:45:0.356:2	0/1:4,9:32:13:0.692:2	./.	./.	0/1:34,25:32:59:0.424:2	./.	0/1:4,46:33:50:0.920:2	./.	./.	0/1:0,62:33:62:1.00:2	0/1:37,29:32:66:0.439:2
chr12	124104551	rs10773019	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,10:32:39:0.256:2	./.	./.	./.	./.	./.
chr12	124104686	rs3204541	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:39,32:31:71:0.451:2	0/1:12,13:32:25:0.520:2	./.	./.	0/1:46,29:30:75:0.387:2	./.	0/1:1,85:31:86:0.988:2	./.	./.	0/1:0,51:30:51:1.00:2	0/1:86,40:32:126:0.317:2
chr12	124144395	rs1051793	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:65,58:29:123:0.472:2	0/1:34,22:29:56:0.393:2	./.	./.	0/1:58,66:29:124:0.532:2	./.	0/1:1,94:29:95:0.989:2	0/1:90,82:29:172:0.477:2	./.	0/1:1,104:28:105:0.990:2	0/1:111,63:28:174:0.362:2
chr12	124171417	rs79251326	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:121,75:32:196:0.383:2	./.	./.	./.	./.	./.	./.
chr12	124171538	rs149430216	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,80:30:170:0.471:2	./.	./.	./.	./.	./.
chr12	124172643	rs144567556	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,29:31:61:0.475:2	./.	./.	./.	./.	./.
chr12	124179417	rs7966867	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:60,47:33:107:0.439:2	0/1:38,27:32:65:0.415:2	./.	./.	0/1:33,18:31:51:0.353:2	0/1:72,37:32:109:0.339:2	0/1:3,55:32:58:0.948:2	0/1:75,30:32:106:0.286:2	./.	0/1:1,66:32:67:0.985:2	0/1:104,51:33:155:0.329:2
chr12	124181049	rs7298440	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:102,77:33:179:0.430:2	0/1:37,29:31:66:0.439:2	./.	./.	0/1:71,45:32:116:0.388:2	./.	0/1:5,136:32:141:0.965:2	0/1:110,80:32:190:0.421:2	./.	0/1:3,173:33:176:0.983:2	0/1:88,99:33:187:0.529:2
chr12	124189110	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,3:33:53:0.057:2
chr12	124209332	rs1139789	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,17:29:35:0.486:2	0/1:5,12:27:17:0.706:2	0/1:0,5:24:5:1.00:2	0/1:0,28:28:28:1.00:2	0/1:22,11:27:33:0.333:2	0/1:0,39:28:39:1.00:2	./.	0/1:17,15:28:32:0.469:2	./.	./.	0/1:21,4:26:25:0.160:2
chr12	124210782	rs1399961	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,33:30:73:0.458:2	0/1:22,15:30:37:0.405:2	0/1:0,6:30:6:1.00:2	0/1:2,66:30:68:0.971:2	0/1:15,12:28:27:0.444:2	0/1:0,68:30:68:1.00:2	./.	0/1:52,38:31:92:0.422:2	./.	./.	0/1:45,44:30:90:0.494:2
chr12	124221701	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,6:27:198:0.030:2	./.	./.	./.	./.
chr12	124229429	rs7135542	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,77:31:147:0.524:2	0/1:47,46:30:93:0.495:2	0/1:0,25:31:25:1.00:2	0/1:0,166:30:166:1.00:2	0/1:105,80:31:185:0.432:2	0/1:0,160:31:160:1.00:2	./.	0/1:101,96:31:197:0.487:2	./.	./.	0/1:88,64:31:152:0.421:2
chr12	124241506	rs17883456	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,70:32:129:0.543:2	0/1:0,130:32:130:1.00:2	./.	./.
chr12	124242557	rs75279884	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,42:32:97:0.433:2	./.
chr12	124265687	rs11057353	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,100:33:102:0.980:2	0/1:1,58:32:59:0.983:2	0/1:9,5:33:14:0.357:2	0/1:2,118:32:120:0.983:2	0/1:49,44:33:93:0.473:2	0/1:0,89:32:89:1.00:2	0/1:63,52:33:115:0.452:2	0/1:2,113:32:115:0.983:2	0/1:0,96:33:96:1.00:2	./.	0/1:82,44:32:126:0.349:2
chr12	124267703	rs11057355	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,23:30:63:0.365:2	0/1:9,16:30:25:0.640:2	0/1:8,4:30:12:0.333:2	0/1:0,53:29:53:1.00:2	0/1:35,32:30:67:0.478:2	0/1:0,56:29:56:1.00:2	0/1:48,45:29:93:0.484:2	0/1:0,88:29:88:1.00:2	0/1:0,67:29:67:1.00:2	0/1:34,31:29:65:0.477:2	0/1:40,36:29:76:0.474:2
chr12	124274474	rs10846559	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:32:33:1.00:2	0/1:1,22:32:23:0.957:2	0/1:7,4:32:11:0.364:2	0/1:0,36:33:36:1.00:2	0/1:22,12:31:34:0.353:2	0/1:0,50:32:50:1.00:2	0/1:26,9:31:35:0.257:2	./.	0/1:0,42:33:42:1.00:2	0/1:24,5:32:29:0.172:2	0/1:41,32:32:73:0.438:2
chr12	124281322	rs76791219	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:54,53:31:107:0.495:2	0/1:50,31:33:81:0.383:2	./.	./.	./.	./.	./.	./.	./.	0/1:55,37:32:92:0.402:2	./.
chr12	124283915	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:31:120:0.033:2	./.	./.	./.	./.
chr12	124288212	rs80041527	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,11:32:29:0.379:2	./.
chr12	124288264	rs77491573	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,28:32:51:0.549:2	./.
chr12	124293413	rs78301653	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,90:32:196:0.459:2	./.	./.	./.
chr12	124297863	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:32:84:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	124317874	rs78764267	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,32:31:108:0.296:2	0/1:36,23:32:59:0.390:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	124325977	rs4930729	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,55:30:106:0.519:2	0/1:41,32:29:73:0.438:2	0/1:0,24:29:24:1.00:2	0/1:0,152:30:152:1.00:2	0/1:0,134:29:134:1.00:2	0/1:0,139:30:139:1.00:2	0/1:0,143:30:143:1.00:2	0/1:0,151:29:151:1.00:2	./.	0/1:0,127:29:127:1.00:2	0/1:82,76:30:158:0.481:2
chr12	124330311	rs34934281	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,40:30:83:0.488:2	./.	0/1:66,35:30:101:0.347:2	./.	./.	./.	./.	./.
chr12	124377814	rs6488908	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,29:33:61:0.475:2	0/1:17,21:32:38:0.553:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	124387574	rs58411567	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,10:29:25:0.400:2	0/1:14,5:32:19:0.263:2	0/1:7,3:30:10:0.300:2	0/1:26,25:30:51:0.490:2	./.	./.	0/1:49,19:30:68:0.279:2	0/1:0,57:31:57:1.00:2	./.	./.	./.
chr12	124387586	rs61587964	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,10:29:27:0.370:2	0/1:14,7:30:21:0.333:2	0/1:8,3:29:11:0.273:2	0/1:27,23:30:50:0.460:2	./.	./.	0/1:46,18:28:64:0.281:2	0/1:0,54:29:54:1.00:2	./.	./.	./.
chr12	124417889	rs4930721	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:31:4:0.750:2	0/1:0,62:30:63:1.00:2	./.	./.	0/1:25,35:30:60:0.583:2	0/1:2,65:31:69:0.970:2	./.	./.	./.
chr12	124419261	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,16:14:122:0.131:2	./.	0/1:126,16:12:144:0.113:2	./.	./.	./.
chr12	124427306	rs11057401	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,7:31:11:0.636:2	0/1:0,83:31:83:1.00:2	./.	./.	0/1:27,39:32:66:0.591:2	0/1:1,60:32:62:0.984:2	./.	./.	./.
chr12	124496864	rs80197353	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,34:31:102:0.333:2	./.	./.	0/1:87,33:32:121:0.275:2	./.	0/1:97,51:33:148:0.345:2
chr12	124497105	rs117836072	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,6:32:28:0.214:2	./.	./.	./.	./.	./.	./.
chr12	124498324	rs78005948	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,33:30:92:0.359:2	./.	./.	0/1:101,42:32:143:0.294:2	./.	0/1:107,62:30:169:0.367:2
chr12	124498969	rs13012	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,6:31:11:0.545:2	./.
chr12	124499542	rs1048497	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,25:30:61:0.410:2	./.	./.	./.	./.	./.	./.	./.
chr12	124499584	rs76694118	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,35:32:72:0.486:2	0/1:34,44:31:78:0.564:2	./.	./.	./.
chr12	124499839	rs3768	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:32:3:0.667:2	0/1:0,39:32:39:1.00:2	./.	./.	./.	0/1:29,18:31:47:0.383:2	./.	./.	./.
chr12	124798801	rs12318072	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,91:32:165:0.552:2	./.	0/1:52,51:33:103:0.495:2	./.	0/1:57,42:32:99:0.424:2
chr12	124798817	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:31:138:0.029:2	./.	./.	./.	./.
chr12	124821696	rs2229842	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,12:28:26:0.462:2	./.	0/1:89,103:31:192:0.536:2	./.	./.	./.	./.	./.	./.
chr12	124824869	rs61755988	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,18:30:34:0.529:2
chr12	124826462	rs2229840	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,55:29:100:0.550:2	./.	0/1:62,51:29:113:0.451:2	./.	0/1:32,31:28:63:0.492:2
chr12	124829234	rs1263992	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,5:30:5:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,4:29:4:1.00:2	0/1:0,8:29:8:1.00:2	0/1:5,7:29:12:0.583:2	0/1:0,7:29:7:1.00:2	./.	0/1:0,4:29:4:1.00:2	0/1:4,7:29:11:0.636:2	0/1:0,8:29:8:1.00:2	./.
chr12	124829255	rs1244085	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,4:28:4:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,7:30:7:1.00:2	0/1:4,6:24:10:0.600:2	0/1:0,7:31:7:1.00:2	./.	0/1:0,4:31:4:1.00:2	0/1:4,6:32:10:0.600:2	0/1:0,6:29:6:1.00:2	./.
chr12	124835279	rs200297509	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,21:31:46:0.457:2	./.	./.	./.	./.
chr12	124856618	rs7961196	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,16:30:45:0.356:2	./.	0/1:20,28:32:48:0.583:2	./.	0/1:21,12:31:33:0.364:2	./.	0/1:6,8:31:14:0.571:2	0/1:14,5:31:19:0.263:2
chr12	124856660	rs3741513	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,8:31:8:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,4:30:4:1.00:2	0/1:8,8:31:16:0.500:2	0/1:0,4:31:4:1.00:2	0/1:9,9:30:18:0.500:2	./.	0/1:8,5:27:13:0.385:2	0/1:0,16:32:16:1.00:2	./.	0/1:2,4:32:6:0.667:2
chr12	124856830	rs142292731	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,17:30:27:0.630:2	./.	./.	./.	./.	./.
chr12	124887102	rs7488825	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,3:33:36:0.083:2	./.	./.
chr12	124957627	rs10846679	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:30:5:0.800:2	./.	./.	./.	./.	./.	0/1:19,21:28:40:0.525:2	./.	./.
chr12	124979789	rs872225	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,15:33:28:0.536:2	0/1:6,7:32:13:0.538:2	./.	./.	./.	0/1:16,17:32:33:0.515:2	./.	./.	0/1:34,9:33:43:0.209:2	0/1:21,14:32:35:0.400:2	0/1:0,18:32:18:1.00:2
chr12	125284748	rs5888	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,36:30:38:0.947:2	0/1:0,30:29:30:1.00:2	./.	0/1:62,29:30:91:0.319:2	0/1:99,30:29:129:0.233:2	0/1:0,54:30:54:1.00:2	0/1:115,35:30:150:0.233:2	0/1:0,84:29:84:1.00:2	./.	0/1:70,19:30:89:0.213:2	0/1:0,42:29:42:1.00:2
chr12	125396289	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant3-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:101,4:32:105:0.038:2	./.	./.	0/1:145,4:32:149:0.027:2	./.	./.	./.	./.	0/1:137,6:33:143:0.042:2	0/1:111,6:33:117:0.051:2	./.
chr12	125396296	rs14565	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:149,7:32:156:0.045:2	./.	./.	./.	./.	0/1:137,7:32:144:0.049:2	0/1:104,6:32:110:0.055:2	./.
chr12	125396377	rs16918544	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:31:134:0.030:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,6:31:190:0.032:2
chr12	125396386	.	G	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:186,5:31:191:0.026:2	0/1:145,4:33:149:0.027:2	./.	0/1:186,9:30:195:0.046:2	0/1:150,9:30:159:0.057:2	0/1:186,7:32:193:0.036:2	0/1:182,6:27:188:0.032:2	./.	0/1:185,5:33:190:0.026:2	0/1:183,6:28:190:0.032:2	0/1:181,10:28:191:0.052:2
chr12	125396398	rs8023	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,5:32:189:0.026:2	./.	0/1:183,5:34:188:0.027:2	0/1:183,7:30:191:0.037:2	0/1:180,10:32:190:0.053:2
chr12	125396488	rs1071727	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,70:32:171:0.409:2	0/1:104,62:32:166:0.373:2	0/1:14,7:33:21:0.333:2	0/1:1,175:33:177:0.994:2	0/1:112,49:33:161:0.304:2	0/1:1,165:32:166:0.994:2	0/1:1,118:33:119:0.992:2	0/1:123,46:32:169:0.272:2	0/1:3,171:33:174:0.983:2	0/1:0,129:33:129:1.00:2	0/1:107,71:32:178:0.399:2
chr12	125396503	rs6657	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:175,6:30:181:0.033:2	./.	./.	./.	0/1:166,5:29:171:0.029:2	./.	./.	./.	0/1:187,5:30:192:0.026:2	0/1:137,8:27:145:0.055:2	./.
chr12	125396523	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,5:29:178:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	125396563	rs1071757	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:34:193:0.026:2
chr12	125396605	rs76238525	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:187,7:33:195:0.036:2	./.	./.	0/1:186,7:32:194:0.036:2	0/1:189,4:32:193:0.021:2	0/1:188,8:30:196:0.041:2	0/1:192,5:33:197:0.025:2	./.	0/1:187,6:29:193:0.031:2	0/1:188,9:32:197:0.046:2	./.
chr12	125396653	rs111913856	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,54:30:188:0.287:2	0/1:149,38:28:187:0.203:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	125396674	rs1071722	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,19:32:194:0.098:2	./.
chr12	125396680	rs79404795	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:183,5:32:188:0.027:2	./.	0/1:184,8:33:193:0.042:2	0/1:186,9:31:195:0.046:2	./.	0/1:178,20:31:198:0.101:2	0/1:190,8:32:198:0.040:2	0/1:186,7:33:193:0.036:2	0/1:187,11:32:198:0.056:2	0/1:176,9:29:185:0.049:2
chr12	125396731	rs71458875	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:187,6:33:193:0.031:2	0/1:182,7:32:189:0.037:2	./.	0/1:192,6:30:198:0.030:2	./.	0/1:190,7:31:197:0.036:2	0/1:180,7:31:187:0.037:2	./.	0/1:185,10:32:195:0.051:2	0/1:178,5:32:183:0.027:2	./.
chr12	125396833	rs112961078	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:177,16:31:194:0.083:2	0/1:177,17:31:194:0.088:2	./.	0/1:180,12:30:192:0.063:2	0/1:193,6:28:199:0.030:2	0/1:174,16:31:190:0.084:2	0/1:182,7:30:189:0.037:2	./.	0/1:170,22:32:192:0.115:2	0/1:173,15:30:188:0.080:2	0/1:184,10:32:194:0.052:2
chr12	125396881	rs1071745	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,38:30:197:0.193:2	0/1:164,29:29:193:0.150:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	125396902	rs17840840	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,17:33:188:0.090:2	./.
chr12	125396908	.	A	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:100,4:32:104:0.038:2	0/1:189,8:34:197:0.041:2	0/1:186,9:32:195:0.046:2	0/1:187,10:32:197:0.051:2	0/1:195,5:28:200:0.025:2	./.	0/1:187,6:29:193:0.031:2	0/1:184,7:30:191:0.037:2	./.
chr12	125396959	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:165,5:32:170:0.029:2	./.	./.	./.	0/1:185,7:31:192:0.036:2	./.	./.	./.	./.	./.
chr12	125397061	rs17840844	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:110,76:31:186:0.409:2	0/1:119,68:31:187:0.364:2	0/1:42,17:31:59:0.288:2	0/1:27,153:32:180:0.850:2	0/1:112,78:32:190:0.411:2	0/1:23,169:31:192:0.880:2	0/1:18,175:32:193:0.907:2	./.	0/1:27,157:32:185:0.853:2	0/1:66,126:32:192:0.656:2	0/1:109,82:32:191:0.429:2
chr12	125397130	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:170,9:32:179:0.050:2	0/1:172,14:32:186:0.075:2	./.	./.	0/1:189,5:31:194:0.026:2	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2
chr12	125397136	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,5:28:181:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	125397172	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,5:30:188:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,6:28:194:0.031:2
chr12	125397187	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,7:30:181:0.039:2	./.	./.	./.	./.	./.	./.	./.	0/1:183,8:31:191:0.042:2	./.
chr12	125397196	rs1136634	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,7:29:188:0.037:2
chr12	125397207	rs201589267	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,6:32:190:0.032:2	0/1:175,6:31:181:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2
chr12	125397244	rs71458876	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,82:32:184:0.446:2	0/1:88,81:32:169:0.479:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	125397337	rs150274132	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,5:30:191:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	125397358	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:32:194:0.026:2	./.	./.	./.	./.
chr12	125397364	rs8963	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:111,72:32:183:0.393:2	0/1:124,54:32:178:0.303:2	0/1:53,46:32:99:0.465:2	0/1:25,165:32:191:0.868:2	0/1:137,59:31:197:0.301:2	0/1:12,178:32:190:0.937:2	0/1:28,162:32:190:0.853:2	0/1:121,72:32:194:0.373:2	0/1:19,169:33:188:0.899:2	0/1:24,167:32:191:0.874:2	0/1:111,83:32:195:0.428:2
chr12	125397439	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:32:182:0.022:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	125397652	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:32:183:0.022:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	125397750	rs7137123	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,180:32:182:0.994:2	0/1:0,118:32:119:1.00:2	0/1:0,27:32:27:1.00:2	0/1:1,186:32:187:0.995:2	0/1:0,181:32:181:1.00:2	0/1:0,191:32:191:1.00:2	0/1:0,183:32:183:1.00:2	0/1:0,179:32:179:1.00:2	0/1:0,181:33:181:1.00:2	0/1:0,176:32:176:1.00:2	0/1:0,180:32:181:1.00:2
chr12	125397814	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,5:28:181:0.028:2	./.	0/1:186,4:35:190:0.021:2	./.	0/1:182,5:31:187:0.027:2
chr12	125397895	rs199930220	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:171,13:30:184:0.071:2	0/1:108,11:31:119:0.092:2	0/1:24,3:32:27:0.111:2	0/1:177,11:26:188:0.059:2	0/1:177,15:30:192:0.078:2	0/1:183,10:29:193:0.052:2	0/1:163,20:30:183:0.109:2	0/1:183,10:30:193:0.052:2	0/1:166,26:31:192:0.135:2	0/1:169,15:31:184:0.082:2	0/1:169,10:30:179:0.056:2
chr12	125398039	rs1071862	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:107,74:32:181:0.409:2	0/1:101,78:32:179:0.436:2	0/1:37,22:32:59:0.373:2	0/1:2,178:32:180:0.989:2	0/1:112,82:31:194:0.423:2	0/1:2,179:32:182:0.989:2	0/1:2,191:31:193:0.990:2	0/1:117,70:32:187:0.374:2	0/1:0,188:32:188:1.00:2	0/1:2,182:32:184:0.989:2	0/1:109,77:31:186:0.414:2
chr12	125398084	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,5:30:187:0.027:2	0/1:177,5:28:182:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,6:32:164:0.037:2
chr12	125398119	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:31:168:0.024:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:32:180:0.022:2	./.
chr12	125398123	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:160,5:30:165:0.030:2	0/1:157,6:28:163:0.037:2	./.	./.	0/1:179,5:29:184:0.027:2	./.	0/1:181,6:28:187:0.032:2	./.	./.	./.	0/1:177,6:29:184:0.033:2
chr12	125398174	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,5:29:124:0.040:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:34:191:0.021:2
chr12	125398275	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:34:173:0.023:2	./.
chr12	125434580	rs4447263	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,29:32:29:1.00:2	0/1:6,3:33:9:0.333:2	0/1:34,26:32:60:0.433:2	0/1:43,42:31:85:0.494:2	0/1:0,79:32:79:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,79:32:79:1.00:2	0/1:34,36:33:70:0.514:2	0/1:39,27:33:66:0.409:2	0/1:20,31:31:51:0.608:2
chr12	125434716	rs4078216	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:30,18:30:48:0.375:2	0/1:12,20:31:32:0.625:2	./.	./.	./.	./.	0/1:1,64:32:65:0.985:2	./.	./.	./.	./.
chr12	125437019	rs4429156	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:32:45:1.00:2	0/1:0,31:30:31:1.00:2	0/1:11,7:29:18:0.389:2	0/1:37,31:31:68:0.456:2	0/1:38,26:31:64:0.406:2	0/1:0,54:32:54:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,57:31:57:1.00:2	0/1:34,20:31:54:0.370:2	0/1:29,17:31:46:0.370:2	0/1:31,12:31:43:0.279:2
chr12	125438516	rs4516060	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,44:30:44:1.00:2	0/1:0,26:30:26:1.00:2	./.	0/1:63,35:31:98:0.357:2	0/1:87,22:31:109:0.202:2	0/1:3,66:31:69:0.957:2	0/1:0,37:30:37:1.00:2	0/1:0,83:30:83:1.00:2	0/1:57,35:30:92:0.380:2	0/1:61,26:31:87:0.299:2	0/1:34,30:29:64:0.469:2
chr12	125438523	rs4258464	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,45:32:45:1.00:2	0/1:0,23:31:23:1.00:2	./.	0/1:62,33:31:95:0.347:2	0/1:86,23:31:109:0.211:2	0/1:3,62:31:65:0.954:2	0/1:0,38:31:38:1.00:2	0/1:0,86:31:86:1.00:2	0/1:53,36:31:89:0.404:2	0/1:59,27:31:86:0.314:2	0/1:32,30:31:62:0.484:2
chr12	125441347	rs12300199	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,17:29:99:0.175:2	./.	./.	./.	./.	./.	0/1:38,13:28:52:0.255:2
chr12	125441359	rs10773127	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,16:28:92:0.174:2	./.	./.	0/1:87,47:29:134:0.351:2	./.	./.	0/1:42,13:28:56:0.236:2
chr12	125448960	rs4076777	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:15,27:29:42:0.643:2	0/1:10,11:32:21:0.524:2	./.	./.	./.	./.	0/1:0,46:31:46:1.00:2	./.	./.	./.	./.
chr12	125451767	rs60252902	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,12:31:49:0.245:2	./.	./.	0/1:19,23:30:42:0.548:2
chr12	125453115	rs11057939	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,25:32:25:1.00:2	./.	./.	./.	./.	./.	./.	0/1:12,9:33:21:0.429:2
chr12	125453437	rs112583947	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,30:30:76:0.395:2	./.	./.	0/1:38,47:32:85:0.553:2	./.	./.
chr12	125461976	rs33931896	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,74:31:151:0.490:2	./.	./.	./.	./.	./.	0/1:66,68:31:134:0.507:2	./.
chr12	125467158	rs11558556	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,7:29:16:0.438:2	0/1:55,38:30:93:0.409:2	0/1:36,36:30:72:0.500:2	0/1:34,40:30:74:0.541:2	0/1:59,40:30:99:0.404:2	./.	0/1:54,57:31:111:0.514:2	0/1:42,37:30:79:0.468:2	0/1:57,48:31:105:0.457:2
chr12	125561151	rs11549081	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,32:30:54:0.593:2	0/1:28,32:31:60:0.533:2	./.	0/1:2,34:31:36:0.944:2	./.	./.	./.
chr12	125834095	rs1491893	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,30:30:65:0.462:2	0/1:13,14:30:27:0.519:2	0/1:4,6:31:10:0.600:2	0/1:0,61:31:61:1.00:2	0/1:28,34:30:62:0.548:2	0/1:43,30:30:73:0.411:2	./.	./.	0/1:42,36:31:78:0.462:2	0/1:0,43:30:43:1.00:2	./.
chr12	125834395	rs3803155	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,53:29:108:0.491:2	0/1:32,33:29:65:0.508:2	0/1:12,17:29:29:0.586:2	0/1:1,146:29:147:0.993:2	0/1:104,63:29:167:0.377:2	0/1:70,60:29:130:0.462:2	0/1:1,160:30:161:0.994:2	./.	0/1:0,157:30:157:1.00:2	0/1:2,132:30:134:0.985:2	0/1:0,146:29:147:1.00:2
chr12	125900095	rs3809261	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,52:33:98:0.542:2	./.	./.
chr12	126068417	rs6489006	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,122:31:123:0.992:2	0/1:0,59:30:59:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,161:30:161:1.00:2	0/1:0,140:30:140:1.00:2	0/1:1,152:30:153:0.993:2	0/1:0,156:30:156:1.00:2	0/1:1,187:30:188:0.995:2	0/1:0,134:31:135:1.00:2	0/1:1,134:30:135:0.993:2	0/1:0,136:30:136:1.00:2
chr12	126137053	rs61940805	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:152,15:28:167:0.090:2	0/1:101,9:30:110:0.082:2	./.	0/1:159,33:30:192:0.172:2	0/1:164,29:27:193:0.150:2	0/1:161,33:28:194:0.170:2	0/1:162,27:29:189:0.143:2	0/1:168,23:28:191:0.120:2	0/1:166,26:29:192:0.135:2	0/1:169,27:27:196:0.138:2	0/1:131,15:29:147:0.103:2
chr12	126137060	rs61021440	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:117,72:30:189:0.381:2	./.	./.	0/1:126,63:31:189:0.333:2	0/1:121,73:31:194:0.376:2	./.	0/1:122,69:30:191:0.361:2	./.
chr12	126139163	rs61756702	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,20:31:59:0.339:2	./.	./.	./.	./.
chr12	128899673	rs11059681	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:19,20:29:39:0.513:2	0/1:18,11:29:29:0.379:2	./.	./.	0/1:29,23:31:52:0.442:2	./.	./.	./.	./.	0/1:33,17:29:50:0.340:2	0/1:28,18:30:46:0.391:2
chr12	128900005	rs1683723	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,46:32:102:0.451:2	0/1:36,45:31:81:0.556:2	0/1:7,8:31:15:0.533:2	0/1:1,181:31:182:0.995:2	0/1:107,80:31:187:0.428:2	0/1:89,85:31:174:0.489:2	0/1:1,189:31:190:0.995:2	0/1:2,184:32:186:0.989:2	0/1:0,139:32:139:1.00:2	0/1:78,71:32:149:0.477:2	0/1:79,57:31:136:0.419:2
chr12	129028586	rs73426420	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:23,31:31:54:0.574:2	0/1:15,15:30:30:0.500:2	./.	./.	./.	./.	0/1:33,40:31:73:0.548:2	./.	./.	./.	./.
chr12	129100757	rs117965239	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,4:32:14:0.286:2	0/1:90,80:32:172:0.471:2	./.	./.	0/1:89,70:32:159:0.440:2	./.	./.	./.	./.
chr12	129153986	rs4272850	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:68,55:31:123:0.447:2	0/1:26,42:31:68:0.618:2	./.	./.	./.	./.	./.	0/1:90,86:31:176:0.489:2	0/1:98,60:32:158:0.380:2	0/1:44,50:32:94:0.532:2	0/1:2,130:32:132:0.985:2
chr12	129181810	rs885546	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:28:51:1.00:2	0/1:0,34:27:34:1.00:2	0/1:0,4:27:4:1.00:2	0/1:0,50:28:50:1.00:2	0/1:0,55:28:55:1.00:2	0/1:0,63:29:63:1.00:2	0/1:0,70:28:70:1.00:2	0/1:1,73:28:74:0.986:2	0/1:0,57:29:57:1.00:2	0/1:0,44:29:44:1.00:2	0/1:16,27:28:43:0.628:2
chr12	129181834	rs902060	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:33:71:1.00:2	./.	0/1:0,9:33:9:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,81:31:81:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,98:33:98:1.00:2	0/1:1,66:32:67:0.985:2	0/1:0,56:33:56:1.00:2	0/1:0,49:31:49:1.00:2
chr12	129189850	rs7959567	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,30:31:57:0.526:2	0/1:7,15:31:22:0.682:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	129189941	rs12424159	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,19:31:33:0.576:2	0/1:13,6:32:19:0.316:2	0/1:0,3:32:3:1.00:2	0/1:0,39:32:39:1.00:2	./.	0/1:7,21:31:28:0.750:2	0/1:0,48:32:48:1.00:2	./.	0/1:13,5:32:18:0.278:2	0/1:10,9:31:19:0.474:2	0/1:11,5:32:16:0.313:2
chr12	129190021	rs11059841	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,21:33:21:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,2:30:2:1.00:2	0/1:0,53:33:54:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,33:32:33:1.00:2	0/1:1,46:32:47:0.979:2	0/1:0,35:32:35:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,22:33:22:1.00:2	0/1:0,30:32:30:1.00:2
chr12	129190474	rs3812792	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,13:29:33:0.406:2	0/1:13,13:28:26:0.500:2	0/1:0,8:31:8:1.00:2	0/1:0,51:29:51:1.00:2	./.	0/1:26,32:28:58:0.552:2	0/1:1,68:28:69:0.986:2	./.	0/1:21,31:26:52:0.596:2	0/1:15,12:30:27:0.444:2	0/1:32,16:29:48:0.333:2
chr12	129190480	rs7316019	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,23:28:52:0.451:2	0/1:36,20:29:56:0.357:2	./.	0/1:16,33:27:49:0.673:2
chr12	129190600	rs369465968	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,25:32:53:0.472:2	./.
chr12	129190717	rs55760351	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,18:30:32:0.563:2	0/1:9,11:31:20:0.550:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	129278864	rs1059312	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:25,27:32:52:0.519:2	0/1:16,7:32:23:0.304:2	0/1:9,3:31:12:0.250:2	./.	./.	0/1:1,48:31:50:0.980:2	0/1:28,26:31:54:0.481:2	0/1:27,31:31:58:0.534:2	./.	0/1:14,23:32:37:0.622:2	./.
chr12	129293346	rs11059924	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,29:32:67:0.433:2	0/1:26,19:32:45:0.422:2	0/1:4,7:33:11:0.636:2	0/1:62,52:31:114:0.456:2	0/1:0,137:32:137:1.00:2	./.	0/1:76,78:32:155:0.506:2	./.	0/1:0,109:33:109:1.00:2	0/1:53,21:32:74:0.284:2	0/1:47,32:32:79:0.405:2
chr12	129299385	rs10847697	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,29:30:72:0.403:2	./.	./.	./.	./.	./.
chr12	129299446	rs33990080	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,32:33:79:0.405:2	./.	./.	./.	./.	./.
chr12	129360498	rs482401	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,47:32:109:0.431:2	./.	0/1:0,81:32:81:1.00:2	0/1:2,104:32:106:0.981:2
chr12	129373247	rs73440307	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,48:31:84:0.571:2
chr12	129558537	rs74344050	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,57:31:121:0.471:2	./.	./.	./.
chr12	129559228	rs140762080	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,87:32:187:0.465:2
chr12	129559421	rs73159540	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,81:31:165:0.491:2	./.	./.	./.	./.	0/1:73,75:32:148:0.507:2	./.	./.
chr12	129559557	rs10773594	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,13:32:23:0.565:2	0/1:8,8:32:16:0.500:2	0/1:0,4:32:4:1.00:2	0/1:20,18:31:38:0.474:2	0/1:0,31:32:31:1.00:2	0/1:19,14:30:33:0.424:2	0/1:11,17:30:28:0.607:2	0/1:0,28:31:28:1.00:2	./.	0/1:13,8:33:21:0.381:2	0/1:14,17:31:31:0.548:2
chr12	129566406	rs79031518	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,31:33:72:0.431:2	0/1:47,28:33:75:0.373:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	130185048	rs151244831	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,29:32:68:0.426:2	0/1:21,16:32:37:0.432:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	130647709	rs10848026	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,33:28:82:0.402:2	0/1:40,17:29:57:0.298:2	./.	./.	./.	./.	./.	./.	0/1:60,53:29:113:0.469:2	./.	./.
chr12	130649134	rs61751357	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,7:31:15:0.467:2	./.	./.	0/1:11,6:31:17:0.353:2	./.
chr12	130649543	rs4760085	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,34:29:34:1.00:2	0/1:0,16:28:16:1.00:2	./.	0/1:0,32:29:32:1.00:2	0/1:0,35:28:35:1.00:2	0/1:0,48:28:48:1.00:2	0/1:12,10:29:22:0.455:2	0/1:0,41:29:41:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,25:29:25:1.00:2	0/1:0,48:29:48:1.00:2
chr12	130649770	rs1046890	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:33:12:0.583:2	./.	0/1:0,46:32:46:1.00:2	0/1:0,64:32:64:1.00:2	0/1:39,26:33:65:0.400:2	./.	0/1:35,45:33:80:0.563:2	0/1:38,37:32:75:0.493:2	./.
chr12	130649962	rs3741568	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	0/1:1,25:32:26:0.962:2	0/1:0,28:30:28:1.00:2	0/1:26,11:32:37:0.297:2	./.	0/1:23,25:33:48:0.521:2	0/1:12,14:33:26:0.538:2	./.
chr12	130650016	rs1046893	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:39,35:34:74:0.473:2	0/1:30,19:32:49:0.388:2	0/1:1,4:32:5:0.800:2	./.	0/1:0,33:31:33:1.00:2	0/1:0,43:32:43:1.00:2	0/1:25,20:30:45:0.444:2	./.	0/1:42,28:34:70:0.400:2	0/1:27,29:33:56:0.518:2	./.
chr12	130650041	rs1046895	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,40:31:75:0.533:2	0/1:18,28:31:46:0.609:2	./.	./.	./.	./.	./.	./.	0/1:26,37:32:63:0.587:2	./.	./.
chr12	130650180	rs56085810	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,54:30:110:0.491:2	0/1:18,21:30:39:0.538:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	130839165	rs10848087	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,43:28:94:0.457:2	0/1:32,30:31:63:0.484:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,61:28:119:0.521:2
chr12	130847389	rs2242363	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,14:30:26:0.538:2	0/1:8,5:29:13:0.385:2	0/1:0,3:30:3:1.00:2	0/1:0,13:28:13:1.00:2	0/1:15,6:31:21:0.286:2	0/1:12,13:30:25:0.520:2	0/1:14,6:30:20:0.300:2	0/1:6,3:33:9:0.333:2	0/1:14,9:32:23:0.391:2	0/1:7,9:31:16:0.563:2	0/1:1,30:31:31:0.968:2
chr12	130884347	rs756186	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,19:31:34:0.559:2	0/1:18,13:30:31:0.419:2	./.	0/1:28,21:30:49:0.429:2	0/1:23,23:30:47:0.500:2	0/1:14,21:30:35:0.600:2	0/1:24,19:30:43:0.442:2	./.	0/1:0,50:31:50:1.00:2	./.	0/1:44,29:31:73:0.397:2
chr12	130912757	rs2277356	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:26,16:31:42:0.381:2	0/1:26,19:32:45:0.422:2	0/1:2,6:31:8:0.750:2	./.	./.	./.	./.	0/1:48,34:31:82:0.415:2	./.	0/1:28,26:31:54:0.481:2	./.
chr12	130941150	rs2277361	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,6:31:18:0.333:2	0/1:8,8:32:16:0.500:2	./.	0/1:12,13:33:25:0.520:2	0/1:0,20:31:20:1.00:2	./.	0/1:15,11:32:26:0.423:2	0/1:17,11:33:28:0.393:2	./.	0/1:14,6:33:20:0.300:2	0/1:11,14:33:25:0.560:2
chr12	131276448	rs4759786	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:32:89:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,120:32:120:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,100:31:100:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,151:32:152:1.00:2	0/1:0,119:33:119:1.00:2	0/1:0,103:32:103:1.00:2	0/1:0,105:33:105:1.00:2
chr12	131306314	rs17564	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:33:76:1.00:2	0/1:2,59:32:61:0.967:2	0/1:8,3:34:11:0.273:2	0/1:1,82:32:84:0.988:2	0/1:36,21:32:57:0.368:2	0/1:0,88:32:88:1.00:2	0/1:39,16:32:55:0.291:2	0/1:63,33:33:96:0.344:2	0/1:84,52:33:136:0.382:2	0/1:0,81:32:81:1.00:2	0/1:100,62:33:162:0.383:2
chr12	131311749	rs137928907	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,12:31:40:0.300:2	./.	./.	./.	./.	./.	./.	./.
chr12	131439237	rs7350616	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,7:31:21:0.333:2	0/1:79,72:29:152:0.477:2	./.	./.	0/1:80,84:29:165:0.512:2	./.	./.	./.	./.
chr12	131456080	rs201546462	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:61,5:29:66:0.076:2	./.	./.	0/1:89,12:18:101:0.119:2	./.	0/1:87,12:20:99:0.121:2	0/1:73,8:18:81:0.099:2	./.	./.	./.	./.
chr12	131466562	rs4759534	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:32:73:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,100:31:100:1.00:2	0/1:0,98:32:98:1.00:2	0/1:0,98:32:98:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,103:33:103:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,83:31:83:1.00:2
chr12	131569105	rs11061318	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,18:32:62:0.290:2	./.	./.
chr12	131590404	rs4759544	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,18:32:27:0.692:2	./.	0/1:12,10:33:22:0.455:2	./.	./.	0/1:5,8:32:13:0.615:2
chr12	131605443	rs11610576	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,48:32:99:0.485:2	0/1:30,33:32:63:0.524:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	131620588	rs868158	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,129:29:129:1.00:2	0/1:1,71:29:72:0.986:2	0/1:0,25:29:25:1.00:2	0/1:192,5:30:197:0.025:2	0/1:0,188:29:188:1.00:2	0/1:0,187:29:187:1.00:2	0/1:1,188:28:189:0.995:2	0/1:111,85:28:196:0.434:2	0/1:0,150:30:151:1.00:2	0/1:0,156:29:156:1.00:2	0/1:70,59:28:129:0.457:2
chr12	131622735	rs7302341	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,15:28:33:0.455:2	0/1:3,8:27:11:0.727:2	./.	0/1:4,41:29:45:0.911:2	0/1:40,30:29:70:0.429:2	0/1:32,16:29:48:0.333:2	./.	0/1:2,67:29:69:0.971:2	0/1:0,31:30:31:1.00:2	./.	0/1:0,35:29:35:1.00:2
chr12	132204043	rs35562367	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,31:32:67:0.463:2	./.	./.	./.
chr12	132237750	rs1051219	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,10:32:22:0.455:2	./.	0/1:96,68:31:164:0.415:2	./.	./.	./.	0/1:91,61:32:152:0.401:2	./.	0/1:73,61:31:134:0.455:2
chr12	132237848	rs1982528	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,65:30:66:0.985:2	0/1:0,35:31:35:1.00:2	0/1:0,9:30:9:1.00:2	0/1:1,96:29:97:0.990:2	0/1:0,117:30:117:1.00:2	0/1:0,130:30:130:1.00:2	./.	0/1:0,128:30:128:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,72:30:72:1.00:2
chr12	132250712	rs1051233	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	0/1:6,7:30:13:0.538:2	./.	./.	./.	0/1:15,7:31:22:0.318:2	./.	0/1:28,12:30:41:0.300:2
chr12	132271113	rs7136643	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,4:34:4:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,16:31:16:1.00:2
chr12	132325239	rs6598163	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,14:29:15:1.00:2	0/1:0,5:28:5:1.00:2	./.	./.	0/1:14,12:30:26:0.462:2	0/1:1,10:30:11:0.909:2	0/1:0,21:29:22:1.00:2	0/1:7,5:30:12:0.417:2	0/1:9,5:29:14:0.357:2	0/1:10,5:30:15:0.333:2	./.
chr12	132325376	rs34515698	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,12:31:19:0.632:2	./.	0/1:16,5:31:21:0.238:2	./.	./.	./.	0/1:8,6:30:14:0.429:2	./.
chr12	132326298	rs35466884	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,38:30:59:0.644:2	./.	0/1:47,21:30:68:0.309:2	./.	./.	./.	0/1:18,21:31:39:0.538:2	./.
chr12	132328566	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.	./.	./.	./.
chr12	132329723	rs35272225	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,110:30:123:0.894:2	./.	./.	./.	./.
chr12	132335592	rs11835665	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,4:30:11:0.364:2	0/1:53,49:30:102:0.480:2	0/1:42,41:28:83:0.494:2	./.	./.	./.	0/1:39,38:31:77:0.494:2	./.	./.
chr12	132391411	rs12425431	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,16:30:31:0.516:2	0/1:13,8:32:21:0.381:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	132392024	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,6:31:81:0.074:2	./.
chr12	132396603	rs11616018	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:31:55:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,14:31:14:1.00:2	0/1:51,51:30:102:0.500:2	0/1:0,103:31:103:1.00:2	0/1:2,100:31:103:0.980:2	0/1:0,124:31:124:1.00:2	0/1:79,62:31:141:0.440:2	0/1:0,118:32:119:1.00:2	0/1:0,70:32:72:1.00:2	0/1:0,74:30:74:1.00:2
chr12	132401566	rs11546871	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:31:6:1.00:2	0/1:27,21:31:48:0.438:2	./.	./.	./.	./.	./.	./.	0/1:1,44:32:45:0.978:2
chr12	132402020	rs4964918	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,14:32:14:1.00:2	0/1:0,18:32:18:1.00:2	./.	0/1:0,18:33:18:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,7:31:7:1.00:2	0/1:9,8:31:17:0.471:2	0/1:0,13:31:13:1.00:2	0/1:0,11:32:11:1.00:2	0/1:6,5:31:11:0.455:2
chr12	132403161	rs11609348	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:32:39:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,5:34:5:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,37:32:37:1.00:2
chr12	132445624	rs143562403	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,82:26:153:0.536:2	./.	./.	./.	./.	./.	./.	./.
chr12	132445675	rs61745448	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,92:32:192:0.479:2
chr12	132445896	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,6:31:18:0.333:2	0/1:9,5:33:14:0.357:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	132508389	rs7133119	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:29,38:29:67:0.567:2	0/1:15,33:29:48:0.688:2	./.	0/1:71,55:29:126:0.437:2	./.	./.	./.	./.	./.	./.	./.
chr12	132516656	rs200733426	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,40:31:109:0.367:2	./.	./.	./.	./.	./.	./.
chr12	132529360	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,17:10:117:0.147:2	./.	./.	./.	0/1:102,26:11:128:0.203:2	./.	./.	./.
chr12	132534931	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,6:19:52:0.115:2	./.	./.	./.	./.	./.	./.	./.
chr12	132547087	rs12366766	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,10:31:88:0.114:2	./.	./.	./.
chr12	132547090	rs7974276	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:27,22:33:49:0.449:2	0/1:16,10:32:26:0.385:2	./.	0/1:61,20:32:82:0.247:2	./.	./.	./.	0/1:77,13:29:90:0.144:2	./.	0/1:41,5:34:46:0.109:2	./.
chr12	132547093	rs10902490	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:46,7:29:53:0.132:2	./.	./.	0/1:60,29:31:89:0.326:2	./.	./.	./.	0/1:79,12:28:91:0.132:2	./.	0/1:42,6:27:48:0.125:2	./.
chr12	132547135	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:32:185:0.022:2	./.	./.	./.
chr12	132547138	rs111782215	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,7:32:187:0.037:2	./.	0/1:86,8:32:94:0.085:2	./.
chr12	132549293	rs77075957	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,18:30:19:0.947:2	./.	./.	./.	./.	./.	./.	./.
chr12	132561987	rs12311898	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,49:32:106:0.462:2	0/1:33,27:31:60:0.450:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	132562126	rs73164912	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,5:31:18:0.278:2	./.	./.	./.	./.	0/1:10,15:31:25:0.600:2	./.
chr12	132588733	rs61744086	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,18:31:45:0.400:2	0/1:22,23:32:45:0.511:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	132588992	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:147,16:27:163:0.098:2	./.	./.	./.	./.	./.	./.	./.
chr12	132589264	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,4:30:18:0.222:2	0/1:7,3:33:10:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	132589649	rs34521142	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:112,32:31:144:0.222:2	0/1:55,13:32:68:0.191:2	0/1:18,4:31:22:0.182:2	./.	./.	./.	./.	./.	./.	0/1:113,26:32:139:0.187:2	0/1:116,45:31:161:0.280:2
chr12	132593231	rs79965197	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:10,9:31:19:0.474:2
chr12	132598995	rs7136649	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:19,23:31:42:0.548:2	0/1:8,12:32:20:0.600:2	0/1:1,3:32:4:0.750:2	./.	./.	./.	./.	./.	./.	0/1:32,22:33:54:0.407:2	0/1:47,19:32:66:0.288:2
chr12	132625960	rs34067942	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:32:5:0.800:2
chr12	132626113	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,4:32:33:0.121:2	./.
chr12	132626425	rs60927391	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:40,37:31:77:0.481:2	0/1:20,21:31:41:0.512:2	0/1:4,9:31:13:0.692:2	./.	./.	./.	./.	./.	./.	0/1:50,39:30:89:0.438:2	0/1:52,50:31:102:0.490:2
chr12	132626668	rs1133690	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,32:30:49:0.653:2	0/1:11,13:29:24:0.542:2	./.	0/1:25,25:31:50:0.500:2	0/1:0,43:30:43:1.00:2	0/1:1,57:29:58:0.983:2	0/1:0,36:30:36:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,49:30:50:1.00:2	0/1:26,25:29:51:0.490:2	0/1:23,20:31:43:0.465:2
chr12	132627319	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:33:133:0.030:2	./.	./.	./.	./.
chr12	132631855	rs11543305	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,5:31:16:0.313:2	./.	0/1:13,14:30:27:0.519:2	./.	./.	0/1:8,12:32:20:0.600:2	0/1:10,4:31:14:0.286:2	./.
chr12	132632659	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:31:64:0.063:2	./.
chr12	132635521	rs7397057	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,30:30:30:1.00:2	0/1:2,10:31:12:0.833:2	./.	0/1:21,22:31:43:0.512:2	0/1:3,38:30:41:0.927:2	0/1:0,38:31:38:1.00:2	./.	0/1:1,53:30:54:0.981:2	0/1:2,41:31:44:0.953:2	0/1:0,24:33:24:1.00:2	0/1:0,37:29:37:1.00:2
chr12	132635845	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,23:31:45:0.511:2	./.	./.
chr12	132636859	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,3:28:15:0.200:2	./.	./.	./.	./.	./.	./.	./.
chr12	132682481	rs12308155	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,47:32:72:0.653:2	0/1:34,16:31:50:0.320:2	0/1:6,12:32:18:0.667:2	0/1:1,100:33:101:0.990:2	0/1:0,91:32:91:1.00:2	0/1:1,116:32:117:0.991:2	0/1:62,23:31:85:0.271:2	0/1:1,107:32:108:0.991:2	0/1:61,43:33:104:0.413:2	0/1:0,83:32:83:1.00:2	0/1:0,41:32:41:1.00:2
chr12	132682484	rs12306514	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,46:30:72:0.648:2	0/1:33,17:30:50:0.340:2	0/1:6,12:30:18:0.667:2	0/1:1,100:30:101:0.990:2	0/1:0,91:30:91:1.00:2	0/1:1,114:30:115:0.991:2	0/1:61,23:31:84:0.274:2	0/1:1,106:30:107:0.991:2	0/1:58,42:31:101:0.420:2	0/1:1,83:30:84:0.988:2	0/1:0,41:29:41:1.00:2
chr12	132688115	rs11246991	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,110:30:194:0.567:2	./.	./.	./.	./.	./.	0/1:51,41:29:92:0.446:2
chr12	132688137	rs7486927	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:2,83:30:85:0.976:2	0/1:0,38:30:38:1.00:2	./.	0/1:97,54:30:151:0.358:2	./.	0/1:2,148:29:150:0.987:2	0/1:87,80:30:167:0.479:2	0/1:99,76:30:175:0.434:2	0/1:53,45:31:98:0.459:2	0/1:0,90:30:90:1.00:2	0/1:0,82:29:82:1.00:2
chr12	132862868	rs78370891	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,168:31:173:0.977:2	./.	0/1:92,92:30:185:0.500:2	0/1:92,96:30:188:0.511:2	./.	./.	0/1:99,77:30:176:0.438:2	./.
chr12	132862879	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:31:179:0.022:2	./.	./.	./.	./.
chr12	132862976	rs28503969	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,97:29:98:0.990:2	0/1:0,49:30:49:1.00:2	0/1:1,10:30:11:0.909:2	./.	0/1:22,28:28:50:0.560:2	0/1:33,37:28:71:0.529:2	0/1:33,28:28:61:0.459:2	0/1:2,66:29:68:0.971:2	0/1:28,22:29:50:0.440:2	./.	0/1:21,26:29:47:0.553:2
chr12	133196596	rs7964634	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,10:31:24:0.417:2	0/1:10,3:30:13:0.231:2	./.	0/1:19,16:31:35:0.457:2	0/1:19,16:30:35:0.457:2	0/1:21,12:31:33:0.364:2	0/1:0,28:29:28:1.00:2	0/1:24,18:30:42:0.429:2	0/1:24,15:30:39:0.385:2	./.	0/1:0,7:31:7:1.00:2
chr12	133197103	rs111640791	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,3:30:30:0.100:2	./.
chr12	133208979	rs5745022	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,38:29:89:0.427:2	0/1:31,24:29:55:0.436:2	0/1:7,5:30:12:0.417:2	0/1:60,48:30:108:0.444:2	0/1:41,31:29:72:0.431:2	0/1:41,46:29:87:0.529:2	0/1:0,86:29:86:1.00:2	0/1:61,56:28:117:0.479:2	0/1:48,57:30:105:0.543:2	0/1:37,47:29:84:0.560:2	0/1:0,114:29:114:1.00:2
chr12	133212582	rs5744990	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:11,15:31:26:0.577:2	0/1:17,12:32:29:0.414:2	./.	0/1:19,17:31:36:0.472:2	./.	./.	0/1:12,19:31:31:0.613:2	./.	0/1:19,21:30:40:0.525:2	0/1:12,5:31:17:0.294:2	./.
chr12	133219831	rs5744944	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,4:32:12:0.333:2	./.	0/1:52,52:29:104:0.500:2	0/1:53,39:29:92:0.424:2	0/1:74,52:30:126:0.413:2	0/1:52,28:30:80:0.350:2	./.	./.	0/1:0,59:29:59:1.00:2
chr12	133219838	rs142508245	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,76:32:134:0.567:2	./.	./.	./.	./.
chr12	133220526	rs5744934	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,94:32:196:0.480:2	./.	./.	./.	./.	0/1:105,88:32:193:0.456:2
chr12	133234020	rs5744886	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,60:30:123:0.488:2	./.
chr12	133236000	rs5744857	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:31:13:0.462:2	./.	0/1:82,38:31:120:0.317:2	0/1:51,44:30:95:0.463:2	0/1:64,50:31:114:0.439:2	0/1:56,52:31:108:0.481:2	./.	./.	0/1:0,79:32:79:1.00:2
chr12	133253974	rs61732929	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,40:30:79:0.506:2	./.	./.	./.	./.	./.	./.	./.
chr12	133253995	rs5744751	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,37:30:85:0.435:2	./.	./.	0/1:47,19:31:66:0.288:2	./.	0/1:51,51:32:102:0.500:2	./.	./.
chr12	133256112	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:194,4:34:198:0.020:2	./.	./.	./.	./.	./.	./.
chr12	133272470	rs74727297	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,17:31:44:0.386:2	./.	./.	0/1:18,11:29:29:0.379:2	./.	0/1:27,24:32:51:0.471:2	./.	./.
chr12	133291495	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:33:184:0.022:2	./.	./.	./.
chr12	133294333	rs61978651	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,24:27:36:0.667:2	./.	0/1:10,12:29:23:0.545:2	./.	./.
chr12	133294371	rs117147264	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:10,10:33:20:0.500:2	0/1:5,7:31:12:0.583:2	./.	./.	./.	./.	./.	./.	./.	0/1:19,16:32:35:0.457:2	./.
chr12	133295353	rs12423651	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,87:32:165:0.527:2	./.	./.	0/1:116,77:31:193:0.399:2	./.	./.	./.
chr12	133295422	rs145248155	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,45:30:103:0.437:2	0/1:36,33:31:69:0.478:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr12	133303973	rs77646743	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,44:32:101:0.436:2	./.	0/1:33,42:33:75:0.560:2	./.	./.
chr12	133304640	rs200148522	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,37:32:91:0.407:2	./.	./.	./.
chr12	133306264	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:35:48:0.083:2	./.	./.
chr12	133306589	rs10781634	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:34,28:31:62:0.452:2	0/1:17,23:31:40:0.575:2	./.	0/1:39,32:31:71:0.451:2	./.	0/1:26,33:30:59:0.559:2	./.	0/1:39,41:31:80:0.513:2	0/1:26,49:31:75:0.653:2	0/1:37,26:31:63:0.413:2	./.
chr12	133306710	rs78905764	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,25:31:69:0.362:2	./.	0/1:33,25:32:58:0.431:2	./.	./.
chr12	133331364	rs34152718	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,22:32:46:0.478:2	./.	0/1:13,17:31:30:0.567:2	./.	./.
chr12	133331459	rs7968520	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:23,29:33:52:0.558:2	0/1:9,17:31:26:0.654:2	./.	./.	./.	./.	./.	./.	./.	0/1:26,29:33:55:0.527:2	./.
chr12	133331537	rs1132375	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:32,19:31:51:0.373:2	0/1:18,11:31:29:0.379:2	./.	0/1:24,18:31:42:0.429:2	./.	0/1:33,26:30:59:0.441:2	./.	0/1:30,31:30:61:0.508:2	0/1:34,38:32:72:0.528:2	0/1:30,21:31:51:0.412:2	./.
chr12	133353221	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:32:73:0.055:2	./.	./.	./.	./.	./.
chr12	133354262	rs143232411	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,51:30:107:0.477:2	./.	./.	./.	0/1:73,69:30:142:0.486:2	./.	./.	./.
chr12	133354313	rs148310828	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,13:32:20:0.650:2	./.	0/1:83,80:32:163:0.491:2	./.	./.	./.	./.	./.	./.
chr12	133357412	rs2291260	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:10,14:33:24:0.583:2	0/1:10,11:32:21:0.524:2	0/1:0,3:33:3:1.00:2	./.	0/1:27,28:32:55:0.509:2	./.	0/1:28,26:32:54:0.481:2	./.	./.	./.	0/1:30,16:33:46:0.348:2
chr12	133363006	rs12823938	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:12,12:31:24:0.500:2	0/1:8,7:31:15:0.467:2	0/1:0,3:31:3:1.00:2	./.	0/1:23,14:31:37:0.378:2	0/1:16,16:31:32:0.500:2	0/1:14,11:31:25:0.440:2	./.	./.	./.	0/1:6,10:32:16:0.625:2
chr12	133363376	rs7976379	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,17:31:37:0.459:2	0/1:18,24:32:42:0.571:2	0/1:0,12:31:12:1.00:2	0/1:0,88:30:88:1.00:2	0/1:0,127:30:127:1.00:2	0/1:56,37:30:93:0.398:2	0/1:0,117:31:117:1.00:2	0/1:74,51:30:125:0.408:2	0/1:54,38:32:92:0.413:2	0/1:0,74:31:74:1.00:2	0/1:0,67:31:67:1.00:2
chr12	133378440	rs2291258	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,11:31:28:0.393:2	0/1:10,5:31:15:0.333:2	./.	./.	./.	0/1:15,23:29:38:0.605:2	./.	0/1:14,22:30:36:0.611:2	0/1:13,13:29:26:0.500:2	0/1:7,25:30:32:0.781:2	./.
chr12	133384516	rs118103768	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:35:13:0.308:2	./.	0/1:46,32:30:78:0.410:2	./.	./.	./.	./.	./.	./.
chr12	133384864	rs3741486	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,94:32:96:0.979:2	./.	./.	./.	0/1:32,27:31:59:0.458:2	0/1:45,43:33:88:0.489:2	./.	0/1:54,59:32:113:0.522:2
chr12	133389998	rs7134809	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,29:30:50:0.580:2	./.	./.	./.	0/1:19,21:29:40:0.525:2	./.	./.	0/1:25,22:28:47:0.468:2
chr12	133393323	rs2291256	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,55:32:132:0.417:2	./.	./.
chr12	133420673	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,5:32:84:0.060:2	./.	./.	./.	./.	./.	./.	./.
chr12	133423662	rs2306536	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,8:32:21:0.381:2	0/1:9,5:30:14:0.357:2	./.	./.	./.	0/1:17,16:32:33:0.485:2	./.	0/1:16,23:31:39:0.590:2	0/1:19,16:31:35:0.457:2	./.	./.
chr12	133423695	rs2306537	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,17:32:39:0.436:2	./.	./.	./.	0/1:21,12:34:33:0.364:2	0/1:18,19:33:37:0.514:2	./.	0/1:22,19:33:41:0.463:2
chr12	133428242	rs2306541	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:21,10:29:31:0.323:2	0/1:8,5:27:13:0.385:2	0/1:0,7:26:7:1.00:2	./.	0/1:23,18:31:41:0.439:2	0/1:12,20:29:32:0.625:2	0/1:8,15:32:23:0.652:2	./.	./.	./.	0/1:10,13:32:23:0.565:2
chr12	133433173	rs2062163	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,113:32:113:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,26:32:26:1.00:2	0/1:98,81:32:179:0.453:2	0/1:0,158:32:158:1.00:2	0/1:0,190:32:190:1.00:2	0/1:0,192:32:192:1.00:2	0/1:0,183:32:183:1.00:2	0/1:0,176:33:176:1.00:2	0/1:1,161:33:162:0.994:2	0/1:0,185:32:185:1.00:2
chr12	133435716	rs35011845	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,65:30:148:0.439:2	./.	./.	./.	0/1:94,80:29:174:0.460:2	0/1:49,61:30:110:0.555:2	./.	0/1:47,49:28:97:0.510:2
chr12	133446245	rs75391939	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:107,85:33:192:0.443:2	./.	./.	./.	./.	./.	./.
chr12	133446282	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:33:129:0.031:2	./.	./.	./.	./.	./.
chr12	133502376	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,27:30:59:0.458:2	./.
chr12	133502476	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.	./.	./.	./.
chr12	133522186	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,9:30:94:0.096:2	0/1:113,4:33:117:0.034:2	./.	./.
chr12	133522200	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,6:26:104:0.058:2	./.	./.	./.
chr12	133587320	rs114975040	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,9:31:13:0.692:2	./.
chr12	133587642	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,4:30:61:0.066:2	./.	./.	./.	./.	./.	./.	./.
chr12	133587980	rs115409196	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:32:24:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,20:33:20:1.00:2	./.	./.	0/1:11,14:34:25:0.560:2	0/1:5,4:33:9:0.444:2	0/1:16,13:34:29:0.448:2
chr12	133618022	rs114793246	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,20:31:36:0.556:2	./.	./.	0/1:21,24:32:45:0.533:2	./.	0/1:11,23:31:34:0.676:2	./.
chr12	133634450	rs115172135	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:33:26:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,6:33:6:1.00:2	0/1:1,39:33:40:0.975:2	0/1:1,22:32:23:0.957:2	0/1:0,26:32:26:1.00:2	0/1:26,12:33:38:0.316:2	0/1:0,41:32:41:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,51:32:51:1.00:2
chr12	133657934	rs368136852	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,3:33:11:0.273:2
chr12	133682655	rs710945	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,13:32:24:0.542:2	0/1:9,7:34:16:0.438:2	./.	0/1:0,28:33:28:1.00:2	0/1:14,3:33:17:0.176:2	./.	0/1:0,21:32:21:1.00:2	0/1:2,30:33:32:0.938:2	0/1:16,25:35:41:0.610:2	0/1:0,28:33:28:1.00:2	0/1:21,16:34:37:0.432:2
chr12	133732512	rs11147259	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,36:30:112:0.321:2	./.	./.	./.	./.
chr12	133732624	rs3763151	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,9:32:20:0.450:2	./.	0/1:10,7:31:17:0.412:2	0/1:0,26:31:26:1.00:2	0/1:8,12:33:20:0.600:2	0/1:11,19:31:30:0.633:2	0/1:14,8:33:22:0.364:2
chr12	133768553	rs61960670	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:56,40:32:96:0.417:2	0/1:27,20:31:47:0.426:2	./.	0/1:1,112:31:113:0.991:2	./.	./.	0/1:45,37:32:82:0.451:2	./.	./.	0/1:50,47:30:97:0.485:2	./.
chr12	133778796	rs7975069	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,12:32:31:0.387:2	./.	0/1:35,12:31:47:0.255:2	0/1:2,55:32:58:0.965:2	0/1:30,28:32:58:0.483:2	0/1:29,10:32:39:0.256:2	0/1:41,28:31:69:0.406:2
chr12	133778887	rs75772856	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,17:32:61:0.279:2	./.	./.	./.
chr13	19600126	rs4770636	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:1,40:31:41:0.976:2	0/1:0,5:31:5:1.00:2	0/1:2,60:31:62:0.968:2	0/1:31,16:31:47:0.340:2	0/1:34,30:31:64:0.469:2	0/1:47,21:32:68:0.309:2	0/1:31,19:31:50:0.380:2	0/1:33,38:32:71:0.535:2	./.	0/1:59,25:31:84:0.298:2
chr13	19600200	rs9511166	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:31:40:1.00:2	0/1:1,30:30:31:0.968:2	0/1:0,4:30:4:1.00:2	0/1:0,51:30:51:1.00:2	0/1:30,22:30:52:0.423:2	0/1:31,13:30:44:0.295:2	0/1:28,7:31:35:0.200:2	0/1:20,13:29:33:0.394:2	0/1:29,21:31:50:0.420:2	./.	0/1:54,27:31:81:0.333:2
chr13	19600389	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:32:188:0.021:2	./.	./.	./.	./.	./.
chr13	19600475	rs9511168	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,104:32:104:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,85:32:85:1.00:2	0/1:50,18:31:68:0.265:2	0/1:49,41:31:90:0.456:2	0/1:43,38:31:81:0.469:2	0/1:34,40:31:76:0.541:2	0/1:72,42:32:114:0.368:2	./.	0/1:86,72:31:158:0.456:2
chr13	19748038	rs1803092	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,26:31:65:0.400:2	0/1:21,19:31:40:0.475:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	19748189	rs1052418	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:34:71:0.056:2	./.	./.	./.	./.
chr13	19751229	rs36216108	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,62:29:157:0.395:2	0/1:54,62:29:116:0.534:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	19751262	rs117337915	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:31:161:0.025:2	./.	./.	./.	./.
chr13	19751388	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:179,9:27:188:0.048:2	./.	0/1:187,5:31:192:0.026:2	./.	./.	./.	./.	./.
chr13	19751544	rs2297224	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,75:30:172:0.436:2	0/1:116,73:30:189:0.386:2	./.	0/1:99,81:31:180:0.450:2	0/1:83,83:31:166:0.500:2	./.	./.	0/1:4,180:30:184:0.978:2
chr13	19751657	rs9507566	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,84:32:170:0.494:2	0/1:70,48:31:118:0.407:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	19751694	rs9507567	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,73:30:143:0.518:2	0/1:50,43:30:93:0.462:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	19753554	rs36215076	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,72:31:171:0.421:2	0/1:43,42:30:85:0.494:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	19753575	rs36215075	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,82:30:187:0.439:2	0/1:44,43:29:87:0.494:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	19761397	rs115716378	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,44:30:91:0.484:2	./.	./.	./.	./.	./.	./.
chr13	19997229	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,6:30:107:0.056:2	./.
chr13	19997267	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,6:32:60:0.100:2	./.
chr13	19999072	rs202027026	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:31:102:0.039:2	./.
chr13	19999107	rs201240281	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,8:32:98:0.082:2	./.
chr13	19999130	rs199746756	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,6:30:75:0.080:2	./.
chr13	20000598	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:128,9:33:137:0.066:2	./.	./.	./.	0/1:107,21:32:128:0.164:2	./.	./.	0/1:122,11:34:133:0.083:2
chr13	20000613	rs76654056	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:77,9:29:86:0.105:2	0/1:45,5:30:50:0.100:2	./.	0/1:114,8:30:122:0.066:2	0/1:60,5:31:65:0.077:2	0/1:112,25:30:137:0.182:2	0/1:80,4:32:84:0.048:2	0/1:96,9:30:105:0.086:2	0/1:112,11:32:123:0.089:2	0/1:90,15:30:105:0.143:2	0/1:94,17:30:111:0.153:2
chr13	20000614	rs77380319	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:78,9:30:87:0.103:2	0/1:44,5:32:49:0.102:2	./.	0/1:111,8:30:119:0.067:2	0/1:57,5:31:62:0.081:2	0/1:106,25:31:131:0.191:2	0/1:81,4:32:85:0.047:2	0/1:94,9:32:103:0.087:2	0/1:110,11:31:121:0.091:2	0/1:90,15:30:105:0.143:2	0/1:91,20:30:111:0.180:2
chr13	20000621	.	T	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:74,8:33:82:0.098:2	0/1:40,5:33:45:0.111:2	./.	0/1:103,6:30:109:0.055:2	0/1:51,4:31:55:0.073:2	0/1:93,18:32:111:0.162:2	./.	./.	0/1:102,10:33:112:0.089:2	0/1:90,8:32:98:0.082:2	0/1:83,15:31:98:0.153:2
chr13	20000630	rs2497218	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,69:32:75:0.920:2	0/1:3,37:32:40:0.925:2	0/1:1,3:32:4:0.750:2	0/1:2,95:32:97:0.979:2	0/1:4,44:32:48:0.917:2	0/1:12,85:32:97:0.876:2	0/1:2,65:33:67:0.970:2	0/1:1,84:33:85:0.988:2	0/1:10,89:33:100:0.899:2	0/1:7,77:32:84:0.917:2	0/1:11,67:33:78:0.859:2
chr13	20006620	rs147012324	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:133,29:32:162:0.179:2	./.	./.	./.	0/1:133,21:31:154:0.136:2	./.	0/1:145,35:31:180:0.194:2	./.
chr13	20006680	rs201767816	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,4:32:17:0.235:2	0/1:117,5:32:122:0.041:2	./.	./.	./.	./.	./.	./.	0/1:103,14:32:117:0.120:2
chr13	20006681	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:33:115:0.035:2	./.
chr13	20006682	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:32:113:0.035:2	./.
chr13	20024273	.	C	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:164,7:32:171:0.041:2	0/1:103,7:32:110:0.064:2	./.	0/1:122,18:30:140:0.129:2	0/1:143,10:28:153:0.065:2	0/1:114,12:31:126:0.095:2	0/1:141,17:31:158:0.108:2	./.	0/1:133,21:32:154:0.136:2	0/1:132,12:30:144:0.083:2	0/1:164,10:31:174:0.057:2
chr13	20025336	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,6:28:82:0.073:2
chr13	20025375	rs4554999	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:25,16:32:41:0.390:2	0/1:23,16:33:39:0.410:2	./.	0/1:32,46:33:78:0.590:2	./.	./.	./.	./.	./.	./.	./.
chr13	20038584	rs7339103	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,135:33:139:0.971:2	0/1:0,50:33:50:1.00:2	0/1:0,12:32:12:1.00:2	0/1:1,158:33:160:0.994:2	0/1:1,78:32:79:0.987:2	./.	0/1:1,110:33:111:0.991:2	0/1:3,125:32:128:0.977:2	0/1:6,157:33:163:0.963:2	0/1:51,68:34:119:0.571:2	0/1:0,151:33:151:1.00:2
chr13	20038663	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:122,4:30:126:0.032:2	0/1:55,4:31:59:0.068:2	./.	./.	0/1:86,7:30:93:0.075:2	./.	./.	./.
chr13	20041425	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:32:159:0.025:2	./.	0/1:140,4:33:144:0.028:2	./.	./.	./.
chr13	20048175	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.	./.	./.
chr13	20048214	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:32:91:0.044:2	./.	./.	./.	./.
chr13	20049760	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:26,3:31:29:0.103:2	0/1:115,5:29:120:0.042:2	./.	./.	./.	0/1:111,6:31:117:0.051:2	./.	./.	./.
chr13	20066994	rs78472618	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,6:32:44:0.136:2	./.	./.	0/1:156,14:31:170:0.082:2	./.	./.	0/1:159,16:33:175:0.091:2	0/1:178,11:33:191:0.058:2	0/1:181,11:33:192:0.057:2
chr13	20067011	rs76437836	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:38,7:30:45:0.156:2	0/1:155,8:31:163:0.049:2	0/1:115,4:30:119:0.034:2	0/1:112,25:29:137:0.182:2	./.	./.	0/1:148,34:30:182:0.187:2	0/1:164,23:30:187:0.123:2	0/1:150,29:29:179:0.162:2
chr13	20077348	rs200774100	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,6:32:133:0.045:2	./.	0/1:105,5:28:110:0.045:2
chr13	20077352	rs201812089	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:55,4:30:59:0.068:2	./.	0/1:128,5:30:133:0.038:2	./.	0/1:109,4:31:113:0.035:2	./.	0/1:114,4:31:118:0.034:2	0/1:132,7:31:139:0.050:2	./.	0/1:105,7:32:112:0.063:2
chr13	20208089	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:31:93:0.043:2	./.	./.
chr13	20221029	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:31:110:0.036:2	./.	./.	./.
chr13	20221038	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:30:115:0.035:2	./.	./.	./.
chr13	20221125	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,11:32:95:0.116:2
chr13	20224202	rs75390100	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,13:29:31:0.419:2	./.	./.	./.
chr13	20224387	rs9578176	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,22:32:49:0.449:2	0/1:17,21:30:38:0.553:2	./.	0/1:36,28:31:64:0.438:2	0/1:12,19:30:31:0.613:2	0/1:33,22:30:55:0.400:2	./.	./.	./.	0/1:15,15:31:30:0.500:2	./.
chr13	20277322	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,6:31:193:0.031:2	./.	./.	./.	./.	./.
chr13	20277413	rs75085951	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,85:33:187:0.457:2	0/1:95,84:32:179:0.469:2	0/1:39,11:33:50:0.220:2	0/1:90,100:33:190:0.526:2	0/1:164,35:32:199:0.176:2	0/1:132,61:33:193:0.316:2	0/1:120,70:33:190:0.368:2	0/1:115,82:32:197:0.416:2	0/1:100,97:34:197:0.492:2	0/1:135,56:33:191:0.293:2	0/1:111,86:32:197:0.437:2
chr13	20279839	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:182,11:31:193:0.057:2	./.	./.	./.	./.	./.	./.
chr13	20279879	rs200516102	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:175,19:32:194:0.098:2	./.	./.	./.	./.	./.	./.
chr13	20325443	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:32:156:0.026:2	./.	./.	./.	./.	./.
chr13	20325466	rs199657239	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,79:32:155:0.510:2	0/1:56,38:31:94:0.404:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	20398669	rs9508907	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,120:31:121:1.00:2	0/1:0,65:30:65:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,119:30:119:1.00:2	0/1:67,38:31:105:0.362:2	0/1:82,48:31:130:0.369:2	0/1:0,79:31:79:1.00:2	0/1:79,53:31:132:0.402:2	0/1:0,154:32:154:1.00:2	0/1:65,44:29:109:0.404:2	0/1:1,180:31:181:0.994:2
chr13	20398742	rs9508908	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,169:32:169:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,160:31:160:1.00:2	0/1:106,69:31:175:0.394:2	0/1:102,89:31:191:0.466:2	0/1:0,125:32:125:1.00:2	0/1:104,85:32:189:0.450:2	0/1:0,190:32:190:1.00:2	0/1:95,63:32:158:0.399:2	0/1:0,180:32:180:1.00:2
chr13	20411701	rs7988277	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,25:32:53:0.472:2	0/1:25,14:32:39:0.359:2	./.	./.	./.	0/1:42,43:30:85:0.506:2	./.	./.	./.	0/1:36,23:32:59:0.390:2	./.
chr13	20412908	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,5:32:176:0.028:2
chr13	20412950	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:33:193:0.026:2
chr13	20413021	rs41292167	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,66:33:126:0.524:2	0/1:32,40:33:72:0.556:2	./.	./.	./.	0/1:88,56:33:144:0.389:2	./.	./.	./.	0/1:101,41:32:142:0.289:2	./.
chr13	20425911	rs9579717	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,17:32:56:0.304:2	0/1:21,20:32:41:0.488:2	./.	./.	./.	0/1:39,18:31:57:0.316:2	./.	./.	./.	0/1:60,19:32:79:0.241:2	./.
chr13	20425948	rs9579718	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,18:29:52:0.346:2	0/1:22,19:29:41:0.463:2	./.	./.	./.	0/1:34,19:29:53:0.358:2	./.	./.	./.	0/1:42,16:30:58:0.276:2	./.
chr13	20567730	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:32:77:0.052:2	./.	./.
chr13	20577165	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,7:32:116:0.060:2	./.	./.	./.	./.	0/1:165,4:32:169:0.024:2	./.
chr13	20577207	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:125,7:32:132:0.053:2	./.	./.	./.	./.	./.	./.
chr13	20610995	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:32:161:0.025:2	./.	./.	./.	./.
chr13	20716411	rs11617415	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,25:29:39:0.641:2	./.	0/1:8,15:29:23:0.652:2	0/1:9,10:26:19:0.526:2	0/1:15,11:28:27:0.423:2	0/1:9,24:30:33:0.727:2	0/1:9,13:28:22:0.591:2	./.
chr13	20716477	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,5:27:89:0.056:2	./.
chr13	20716533	rs968566	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:31:42:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,86:30:86:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,74:30:74:1.00:2	0/1:0,83:30:83:1.00:2	0/1:1,45:31:46:0.978:2	0/1:0,39:31:39:1.00:2	0/1:0,51:30:51:1.00:2
chr13	21013743	rs375891666	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,40:32:87:0.460:2	./.	./.	./.	./.
chr13	21063524	rs14236	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:14,25:25:39:0.641:2	0/1:12,8:28:20:0.400:2	./.	./.	./.	./.	0/1:52,32:29:84:0.381:2	./.	0/1:34,34:31:68:0.500:2	0/1:16,17:28:33:0.515:2	./.
chr13	21086599	rs7139733	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,31:31:31:1.00:2	0/1:16,11:30:27:0.407:2	./.	0/1:20,7:31:27:0.259:2	./.	./.	./.
chr13	21165807	rs73431345	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,15:32:23:0.652:2	./.
chr13	21189941	rs2442455	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,8:30:24:0.333:2	./.	0/1:13,9:30:22:0.409:2	./.	./.	./.	./.	0/1:19,16:33:35:0.457:2
chr13	21205192	rs9509307	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,16:32:45:0.356:2	0/1:10,5:32:15:0.333:2	0/1:22,16:31:38:0.421:2	0/1:12,19:32:31:0.613:2	0/1:1,21:31:22:0.955:2	0/1:27,22:32:49:0.449:2	0/1:0,26:31:26:1.00:2	0/1:35,23:32:58:0.397:2
chr13	21219022	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:32:83:0.048:2	./.
chr13	21237651	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:29:44:0.091:2	./.	./.
chr13	21306140	rs35948132	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,37:33:96:0.385:2	./.	./.
chr13	21361634	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:34:119:0.034:2
chr13	21374333	rs9579954	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:27:15:0.400:2	./.	./.	./.	0/1:78,52:29:130:0.400:2	./.	./.	./.	./.
chr13	21417116	rs150400673	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,41:33:74:0.562:2	0/1:22,12:33:34:0.353:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	21549384	rs55869942	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,40:32:83:0.482:2	./.	./.	./.	./.	./.	0/1:60,43:32:103:0.417:2
chr13	21562371	rs59928188	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:30:5:1.00:2	./.
chr13	21562832	rs2770928	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,3:34:3:1.00:2	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	0/1:0,3:32:3:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,2:30:2:1.00:2	./.
chr13	21562948	rs558614	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	0/1:0,2:31:2:1.00:2	0/1:0,5:30:5:1.00:2	./.	0/1:0,3:30:3:1.00:2
chr13	21620085	rs7317471	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,45:33:97:0.464:2	0/1:24,42:32:66:0.636:2	0/1:8,12:32:20:0.600:2	0/1:0,135:33:135:1.00:2	0/1:42,47:33:89:0.528:2	0/1:0,103:32:103:1.00:2	0/1:2,85:33:87:0.977:2	0/1:58,55:33:113:0.487:2	0/1:0,134:33:134:1.00:2	0/1:43,55:32:99:0.561:2	0/1:56,55:32:111:0.495:2
chr13	21620099	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:32:83:0.048:2	./.	./.	./.	./.
chr13	21720956	rs4620	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:43,26:33:69:0.377:2	0/1:24,15:32:39:0.385:2	./.	./.	0/1:29,25:31:54:0.463:2	0/1:44,22:32:66:0.333:2	0/1:3,41:32:44:0.932:2	0/1:36,28:32:64:0.438:2	./.	./.	0/1:53,41:33:94:0.436:2
chr13	21720977	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:33:59:0.068:2	./.	./.	./.	./.
chr13	21721018	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:33:83:0.048:2	./.	./.	./.	./.
chr13	21729226	rs17345383	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,38:33:112:0.339:2	./.	./.
chr13	21729252	rs11147976	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,45:33:150:0.300:2	./.
chr13	21729267	rs11147977	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,38:30:133:0.286:2	./.
chr13	21729950	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,7:21:57:0.123:2	0/1:32,15:20:47:0.319:2	./.	./.	0/1:29,13:19:42:0.310:2	./.	0/1:53,8:20:61:0.131:2	0/1:44,11:20:55:0.200:2
chr13	21732094	rs4770121	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,12:33:12:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,18:32:18:1.00:2	0/1:7,4:33:11:0.364:2	0/1:9,22:33:31:0.710:2	0/1:0,10:32:10:1.00:2
chr13	21732175	rs17279819	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,11:33:32:0.344:2	./.	./.
chr13	21732193	rs17345571	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,11:33:38:0.289:2	./.	./.
chr13	21734063	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:32:45:0.089:2	./.	./.
chr13	21735998	rs17345690	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,26:33:50:0.520:2	0/1:15,16:32:31:0.516:2	0/1:0,6:33:6:1.00:2	0/1:38,17:33:55:0.309:2	./.	./.	./.	./.	./.	./.	./.
chr13	21742311	rs61950353	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,66:31:198:0.333:2	./.
chr13	21746637	rs11546983	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,14:31:32:0.438:2	0/1:9,13:31:22:0.591:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	21750538	rs61950356	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,11:31:20:0.550:2	./.
chr13	21752154	rs598000	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:31:25:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,63:31:63:1.00:2
chr13	21752805	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,2:35:5:0.400:2	./.	./.
chr13	21957120	rs138594651	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,20:31:59:0.339:2	./.	./.	./.	./.
chr13	21965976	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:30:129:0.031:2	./.
chr13	22088527	rs75587181	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,40:32:86:0.465:2	./.	./.	./.	./.	./.
chr13	22275394	rs9509841	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,69:29:138:0.500:2	0/1:32,29:28:61:0.475:2	0/1:0,24:29:24:1.00:2	0/1:0,183:29:183:1.00:2	0/1:39,43:28:82:0.524:2	0/1:0,170:29:170:1.00:2	0/1:1,123:29:124:0.992:2	0/1:1,160:29:161:0.994:2	0/1:89,77:30:166:0.464:2	0/1:76,61:29:137:0.445:2	0/1:103,84:29:187:0.449:2
chr13	22275485	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:33:137:0.029:2	./.	./.
chr13	23808782	rs1800350	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,26:29:46:0.565:2	./.	./.	./.	./.
chr13	23824783	rs1800351	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,17:33:46:0.370:2	./.	./.	0/1:0,57:32:57:1.00:2	0/1:21,38:32:59:0.644:2	0/1:31,27:34:58:0.466:2	./.	./.
chr13	23824818	rs17314986	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,23:31:59:0.390:2	./.	./.	./.	./.	./.	0/1:44,22:33:66:0.333:2
chr13	23898509	rs1800353	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,30:31:66:0.455:2	0/1:18,24:31:42:0.571:2	0/1:1,4:30:5:0.800:2	0/1:0,86:30:86:1.00:2	0/1:0,96:30:96:1.00:2	0/1:39,51:29:90:0.567:2	0/1:1,93:31:94:0.989:2	0/1:60,41:31:101:0.406:2	0/1:43,51:33:94:0.543:2	0/1:26,31:31:57:0.544:2	0/1:1,62:31:63:0.984:2
chr13	23898664	rs1800354	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,25:32:25:1.00:2	./.	0/1:0,66:32:66:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,97:33:97:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,40:31:40:1.00:2
chr13	23905711	rs2737699	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,60:33:61:0.984:2	./.	./.	./.	./.
chr13	23907677	rs2737701	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,41:31:42:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,42:31:42:1.00:2	0/1:1,40:31:41:0.976:2	0/1:0,40:32:40:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,99:31:99:1.00:2
chr13	23907909	rs17078605	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,45:32:45:1.00:2	./.	./.	./.	./.
chr13	23908034	rs2737700	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,42:30:42:1.00:2	0/1:0,30:29:30:1.00:2	./.	0/1:37,23:29:60:0.383:2	0/1:21,23:31:44:0.523:2	0/1:37,32:28:69:0.464:2	./.	0/1:1,63:28:64:0.984:2	0/1:37,35:31:72:0.486:2	0/1:49,24:31:73:0.329:2	0/1:0,79:29:79:1.00:2
chr13	23909162	rs9552929	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,25:30:25:1.00:2	./.	./.	./.	./.
chr13	23909993	rs34928783	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,13:33:22:0.591:2	./.	./.	./.	./.	./.	./.
chr13	23911820	rs4143768	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,11:32:12:0.917:2	./.	./.	./.	./.
chr13	23914886	rs148878361	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,19:31:42:0.452:2	./.	./.	./.
chr13	23929095	rs1536365	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,27:31:52:0.529:2	./.	./.	0/1:36,31:33:67:0.463:2	0/1:26,12:31:38:0.316:2	./.
chr13	23929842	rs41315020	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,44:29:99:0.444:2	./.	./.	./.	./.	./.	./.	./.
chr13	23930055	rs2031640	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,71:31:157:0.452:2	./.	./.	0/1:101,88:32:189:0.466:2	0/1:62,59:32:121:0.488:2	./.
chr13	23985391	rs17078720	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,42:30:116:0.362:2	0/1:34,34:29:68:0.500:2	0/1:1,14:30:15:0.933:2	0/1:79,68:30:147:0.463:2	0/1:53,28:29:81:0.346:2	./.	0/1:56,40:30:96:0.417:2	./.	./.	0/1:71,53:30:124:0.427:2	0/1:0,117:30:117:1.00:2
chr13	24167505	rs9550987	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,11:32:31:0.355:2	0/1:1,33:31:34:0.971:2	./.	0/1:8,17:30:25:0.680:2	./.
chr13	24234517	rs3751364	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:28:58:1.00:2	0/1:0,49:29:49:1.00:2	0/1:6,3:29:9:0.333:2	0/1:40,24:30:64:0.375:2	0/1:60,49:28:109:0.450:2	0/1:0,91:29:91:1.00:2	0/1:0,93:28:93:1.00:2	0/1:0,93:29:93:1.00:2	0/1:0,83:29:83:1.00:2	./.	0/1:66,24:27:90:0.267:2
chr13	24242165	rs61745191	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:32:11:0.636:2	./.	./.	./.	./.	./.	./.	./.	./.
chr13	24243200	rs3751363	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:26:53:1.00:2	0/1:0,30:28:30:1.00:2	0/1:4,3:27:7:0.429:2	0/1:0,67:27:67:1.00:2	0/1:0,96:27:96:1.00:2	0/1:0,54:28:54:1.00:2	0/1:0,62:27:62:1.00:2	0/1:0,126:26:126:1.00:2	0/1:0,80:29:80:1.00:2	./.	0/1:0,62:27:62:1.00:2
chr13	24243204	rs3751362	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,25:28:67:0.373:2	0/1:42,49:28:91:0.538:2	./.	./.	./.	./.	./.	0/1:29,31:29:60:0.517:2
chr13	24380127	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:33:89:0.045:2	./.	./.
chr13	24411772	rs7333040	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:32:71:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,57:32:57:1.00:2	0/1:1,77:32:78:0.987:2	0/1:0,71:34:71:1.00:2	0/1:0,64:33:64:1.00:2	0/1:0,72:33:72:1.00:2
chr13	24436475	rs11551114	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,74:32:176:0.420:2
chr13	24436521	rs181059130	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,58:33:118:0.492:2	./.	./.	./.	./.	./.	./.	./.
chr13	24460599	rs370895487	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,3:33:53:0.057:2	./.	./.	./.	./.
chr13	24465537	rs140860568	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,59:32:138:0.428:2	./.	./.	./.	./.	./.	./.
chr13	24465562	rs41286068	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,5:29:192:0.026:2	./.	./.	./.	./.	./.
chr13	24465623	rs4083570	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:179,11:32:191:0.058:2	./.	0/1:160,10:31:170:0.059:2	0/1:188,8:32:196:0.041:2	0/1:193,4:34:197:0.020:2	0/1:182,4:33:186:0.022:2	0/1:99,10:32:110:0.092:2
chr13	24465703	rs56307205	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,10:33:101:0.099:2
chr13	24465717	rs3864970	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:171,6:26:177:0.034:2	./.	0/1:14,5:32:19:0.263:2	0/1:76,24:30:100:0.240:2	0/1:52,28:30:80:0.350:2	./.	0/1:132,7:30:139:0.050:2	./.	0/1:165,7:25:172:0.041:2	0/1:138,7:27:145:0.048:2	0/1:4,62:30:67:0.939:2
chr13	24465743	rs3864971	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,145:30:145:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,21:29:21:1.00:2	0/1:0,107:30:107:1.00:2	0/1:0,63:28:63:1.00:2	0/1:2,145:29:147:0.986:2	0/1:0,109:29:109:1.00:2	0/1:0,146:29:146:1.00:2	0/1:0,155:30:155:1.00:2	0/1:0,129:30:129:1.00:2	0/1:0,75:29:75:1.00:2
chr13	24465897	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,7:32:78:0.090:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	24468278	rs199574883	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,51:31:118:0.432:2	./.	./.	./.	./.
chr13	24468329	rs4067961	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,9:32:11:0.818:2
chr13	24471039	rs66990269	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:145,23:34:168:0.137:2	0/1:91,6:34:97:0.062:2	0/1:21,4:34:25:0.160:2	0/1:134,61:32:195:0.313:2	0/1:122,69:33:191:0.361:2	./.	0/1:193,5:33:198:0.025:2	./.	./.	./.	0/1:58,114:33:172:0.663:2
chr13	24471048	rs35159134	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,6:32:27:0.222:2	0/1:116,74:30:190:0.389:2	0/1:117,71:31:188:0.378:2	./.	0/1:189,7:31:196:0.036:2	./.	./.	./.	0/1:114,57:31:171:0.333:2
chr13	24471110	rs201194245	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,7:30:123:0.057:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	24797786	rs9511156	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,13:31:21:0.619:2	./.
chr13	24797913	rs1220546	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:16,23:32:39:0.590:2	0/1:9,20:32:29:0.690:2	./.	./.	0/1:23,15:31:38:0.395:2	./.	0/1:22,21:31:43:0.488:2	0/1:35,30:31:65:0.462:2	./.	./.	0/1:34,22:31:56:0.393:2
chr13	24798120	rs1220547	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,19:31:20:0.950:2	0/1:0,6:32:6:1.00:2	0/1:2,3:22:5:0.600:2	0/1:10,13:33:23:0.565:2	0/1:0,23:31:23:1.00:2	./.	0/1:6,4:31:10:0.400:2	0/1:14,9:31:23:0.391:2	0/1:10,5:33:15:0.333:2	0/1:11,14:32:25:0.560:2	0/1:8,7:32:15:0.467:2
chr13	24798506	rs41314440	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,27:31:41:0.659:2	./.	./.	./.	./.	0/1:7,10:34:17:0.588:2	./.	./.
chr13	24823699	rs41287016	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,33:31:63:0.524:2
chr13	24844994	rs35768526	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,68:30:129:0.527:2	./.	./.	0/1:111,64:30:175:0.366:2	./.	./.	0/1:87,64:29:151:0.424:2
chr13	24868919	rs35793500	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,47:29:98:0.480:2	./.	./.	./.
chr13	24876752	rs33990382	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,21:30:39:0.538:2	0/1:15,16:31:31:0.516:2	./.	./.	0/1:39,20:31:59:0.339:2	0/1:29,29:31:58:0.500:2	./.	0/1:34,28:30:62:0.452:2	./.	0/1:32,15:31:47:0.319:2	0/1:14,27:31:41:0.659:2
chr13	24890157	rs1974332	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,57:31:135:0.422:2	0/1:40,35:32:75:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	24890219	rs200137374	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,4:31:21:0.190:2	0/1:143,36:31:179:0.201:2	0/1:148,36:31:184:0.196:2	./.	./.	./.	./.	./.	0/1:156,20:31:177:0.114:2
chr13	24890228	rs4275724	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:93,54:32:147:0.367:2	0/1:38,31:33:69:0.449:2	0/1:20,3:33:23:0.130:2	0/1:141,35:34:176:0.199:2	0/1:149,39:33:188:0.207:2	./.	./.	./.	./.	./.	0/1:116,51:32:167:0.305:2
chr13	24895240	rs200205073	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,5:28:47:0.106:2	0/1:32,7:32:39:0.179:2	./.	0/1:0,9:31:9:1.00:2	0/1:0,10:32:10:1.00:2	./.	0/1:0,9:33:9:1.00:2	0/1:1,4:34:5:0.800:2	0/1:0,4:31:4:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,13:33:13:1.00:2
chr13	24895393	rs3751355	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:33:4:1.00:2	./.	0/1:0,3:29:3:1.00:2
chr13	24895437	rs202198487	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,23:33:37:0.622:2	0/1:14,14:32:28:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	24895559	rs3751357	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,30:32:89:0.337:2	0/1:33,28:31:61:0.459:2	0/1:0,12:32:13:1.00:2	0/1:1,93:32:94:0.989:2	0/1:0,68:31:68:1.00:2	0/1:91,37:32:128:0.289:2	0/1:0,44:33:44:1.00:2	0/1:1,82:32:83:0.988:2	0/1:3,75:32:78:0.962:2	0/1:1,57:33:58:0.983:2	0/1:0,122:32:122:1.00:2
chr13	24895617	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:122,7:29:129:0.054:2	./.	./.	./.	./.	0/1:128,9:29:137:0.066:2	./.	./.	0/1:139,8:31:147:0.054:2	0/1:116,4:32:120:0.033:2	./.
chr13	24895631	rs78083136	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,33:33:186:0.177:2
chr13	24895684	rs2862239	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,130:32:130:1.00:2	0/1:1,93:32:94:0.989:2	0/1:0,15:32:15:1.00:2	0/1:0,148:32:148:1.00:2	0/1:0,94:32:94:1.00:2	0/1:75,74:32:149:0.497:2	0/1:0,90:33:90:1.00:2	0/1:1,160:32:161:0.994:2	0/1:0,162:33:162:1.00:2	0/1:0,143:33:143:1.00:2	0/1:0,174:32:174:1.00:2
chr13	24895745	rs77554188	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,56:30:192:0.292:2
chr13	24895805	rs4589405	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,41:30:116:0.353:2	./.	./.	./.	./.	./.
chr13	24995256	rs375778177	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,6:31:197:0.030:2	0/1:193,5:31:198:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	24995332	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:187,9:31:196:0.046:2	./.	./.	./.	./.	./.	./.
chr13	24995367	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:173,16:31:189:0.085:2	0/1:180,14:32:194:0.072:2	./.	0/1:170,19:32:189:0.101:2	./.	./.	./.	./.	./.	0/1:170,22:32:192:0.115:2	./.
chr13	24995439	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:178,11:30:189:0.058:2	0/1:86,6:30:92:0.065:2	./.	0/1:141,13:31:154:0.084:2	./.	./.	./.	./.	./.	0/1:157,11:31:169:0.065:2	./.
chr13	24995441	.	C	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:177,13:27:190:0.068:2	0/1:86,6:31:92:0.065:2	./.	0/1:140,14:30:154:0.091:2	./.	./.	./.	./.	./.	0/1:156,11:30:167:0.066:2	./.
chr13	25000617	rs7571	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,85:32:176:0.483:2	0/1:49,49:32:98:0.500:2	0/1:10,11:31:21:0.524:2	0/1:1,170:32:171:0.994:2	0/1:97,101:31:198:0.510:2	0/1:123,75:32:199:0.379:2	0/1:122,76:32:198:0.384:2	./.	0/1:5,190:33:195:0.974:2	0/1:92,101:31:193:0.523:2	0/1:112,83:32:195:0.426:2
chr13	25008588	rs1372085	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:33:51:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,84:32:85:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,74:32:74:1.00:2	0/1:1,71:32:72:0.986:2	0/1:0,73:32:73:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,78:32:78:1.00:2
chr13	25008630	rs1822135	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:30:44:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,5:28:5:1.00:2	0/1:1,88:30:89:0.989:2	0/1:0,34:29:34:1.00:2	0/1:0,42:29:42:1.00:2	0/1:1,58:30:59:0.983:2	0/1:1,64:29:65:0.985:2	0/1:0,68:30:68:1.00:2	0/1:0,56:30:56:1.00:2	0/1:0,59:30:59:1.00:2
chr13	25008903	rs9318536	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:29:37:1.00:2	0/1:2,31:30:33:0.939:2	0/1:0,3:30:3:1.00:2	0/1:4,60:28:64:0.938:2	0/1:6,23:29:29:0.793:2	0/1:10,39:28:49:0.796:2	0/1:6,47:29:53:0.887:2	0/1:3,61:28:64:0.953:2	0/1:2,52:29:54:0.963:2	0/1:4,49:30:53:0.925:2	0/1:4,65:28:69:0.942:2
chr13	25009099	rs9511259	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:32:43:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,63:33:63:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,56:33:56:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,72:32:72:1.00:2
chr13	25009297	rs1050112	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:56,27:26:84:0.325:2	0/1:35,26:28:61:0.426:2	./.	0/1:1,94:26:95:0.989:2	0/1:34,33:25:68:0.493:2	0/1:56,42:27:98:0.429:2	0/1:40,34:27:75:0.459:2	./.	0/1:2,117:25:119:0.983:2	0/1:59,37:28:96:0.385:2	0/1:66,51:27:119:0.436:2
chr13	25009441	rs13428	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,44:31:97:0.454:2	0/1:36,31:30:67:0.463:2	0/1:8,5:31:13:0.385:2	0/1:0,92:31:92:1.00:2	0/1:47,34:30:81:0.420:2	0/1:58,43:30:101:0.426:2	0/1:35,39:31:74:0.527:2	./.	0/1:0,129:31:129:1.00:2	0/1:58,37:30:95:0.389:2	0/1:54,49:31:103:0.476:2
chr13	25009485	rs1050110	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,24:32:53:0.453:2	0/1:15,14:32:29:0.483:2	./.	0/1:0,44:32:44:1.00:2	0/1:26,24:32:51:0.480:2	0/1:32,21:32:53:0.396:2	0/1:13,15:32:28:0.536:2	./.	0/1:0,70:33:70:1.00:2	0/1:32,21:32:53:0.396:2	0/1:35,31:32:66:0.470:2
chr13	25016008	rs59195808	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,12:31:35:0.343:2	0/1:17,6:30:23:0.261:2	./.	0/1:0,31:30:31:1.00:2	0/1:18,7:30:25:0.280:2	0/1:34,11:28:45:0.244:2	0/1:13,15:30:28:0.536:2	./.	0/1:4,51:31:55:0.927:2	0/1:16,7:31:23:0.304:2	0/1:41,20:30:61:0.328:2
chr13	25016092	rs55888616	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,6:32:22:0.273:2	0/1:9,4:32:13:0.308:2	0/1:4,3:31:7:0.429:2	0/1:0,17:31:17:1.00:2	0/1:9,6:32:15:0.400:2	0/1:10,7:31:17:0.412:2	0/1:7,4:32:11:0.364:2	./.	0/1:0,21:32:21:1.00:2	./.	0/1:18,12:32:30:0.400:2
chr13	25016762	rs113301501	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:134,12:30:146:0.082:2	./.	./.	0/1:104,10:30:114:0.088:2	0/1:68,15:28:84:0.181:2	0/1:98,10:27:108:0.093:2	0/1:73,4:31:77:0.052:2	0/1:95,11:30:106:0.104:2	0/1:135,14:31:150:0.094:2	0/1:91,22:30:113:0.195:2	0/1:155,40:30:195:0.205:2
chr13	25020863	rs9318554	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,116:31:116:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,125:32:125:1.00:2	0/1:0,118:33:118:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,146:33:146:1.00:2
chr13	25021154	rs61947037	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:49,30:33:79:0.380:2	0/1:32,25:33:57:0.439:2	0/1:9,6:33:15:0.400:2	./.	0/1:40,42:32:82:0.512:2	0/1:53,37:32:90:0.411:2	0/1:74,27:32:101:0.267:2	0/1:5,84:32:89:0.944:2	./.	0/1:54,31:33:85:0.365:2	0/1:65,50:31:115:0.435:2
chr13	25021200	rs9318558	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,113:31:113:1.00:2	0/1:0,69:30:69:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,155:31:155:1.00:2	0/1:0,127:30:128:1.00:2	0/1:0,126:30:126:1.00:2	0/1:0,137:31:137:1.00:2	0/1:0,144:30:144:1.00:2	0/1:0,159:31:159:1.00:2	0/1:0,114:30:114:1.00:2	0/1:0,130:30:130:1.00:2
chr13	25021201	rs201405094	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:110,4:31:114:0.035:2	0/1:65,5:31:70:0.071:2	./.	./.	0/1:125,6:31:131:0.046:2	./.	0/1:132,7:32:139:0.050:2	0/1:134,15:32:149:0.101:2	./.	0/1:112,4:32:116:0.034:2	0/1:133,9:31:142:0.063:2
chr13	25021211	rs7333856	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,106:31:116:0.922:2	0/1:9,65:32:74:0.878:2	0/1:2,22:30:24:0.917:2	0/1:1,156:31:157:0.994:2	0/1:8,121:31:130:0.938:2	0/1:3,141:31:144:0.979:2	0/1:30,133:32:163:0.816:2	0/1:35,129:31:164:0.787:2	0/1:8,162:32:170:0.953:2	0/1:6,118:31:124:0.952:2	0/1:24,122:31:146:0.836:2
chr13	25021245	rs7334587	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,103:31:119:0.866:2	0/1:14,66:31:80:0.825:2	0/1:1,18:28:20:0.947:2	0/1:1,152:30:153:0.993:2	0/1:14,115:30:129:0.891:2	0/1:1,138:29:139:0.993:2	0/1:52,119:30:173:0.696:2	0/1:61,110:29:171:0.643:2	0/1:21,134:30:155:0.865:2	0/1:13,120:29:134:0.902:2	0/1:61,115:29:177:0.653:2
chr13	25021263	rs77269056	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:94,17:30:111:0.153:2	0/1:66,12:29:78:0.154:2	0/1:18,3:31:21:0.143:2	./.	0/1:118,15:29:133:0.113:2	./.	0/1:114,54:30:168:0.321:2	0/1:113,56:29:169:0.331:2	0/1:129,21:29:150:0.140:2	0/1:112,18:28:130:0.138:2	0/1:119,58:29:177:0.328:2
chr13	25021323	rs73172125	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:51,14:31:65:0.215:2	0/1:35,8:33:43:0.186:2	0/1:2,3:31:5:0.600:2	./.	0/1:45,17:32:62:0.274:2	./.	0/1:49,32:32:81:0.395:2	0/1:58,31:31:89:0.348:2	0/1:53,11:33:64:0.172:2	0/1:66,24:32:90:0.267:2	0/1:65,39:32:104:0.375:2
chr13	25023918	rs113198723	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:32:139:0.029:2	./.	./.	./.	./.
chr13	25023936	rs9581043	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:107,54:31:161:0.335:2	./.	./.	./.	./.	./.	./.
chr13	25027744	rs4770684	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,163:29:163:1.00:2	0/1:0,92:29:92:1.00:2	0/1:0,19:28:19:1.00:2	0/1:0,191:30:191:1.00:2	0/1:1,190:29:191:0.995:2	0/1:0,194:29:194:1.00:2	0/1:3,181:29:184:0.984:2	0/1:1,180:29:181:0.994:2	0/1:0,192:30:192:1.00:2	0/1:2,140:29:142:0.986:2	0/1:0,187:29:187:1.00:2
chr13	25029218	rs2275660	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,35:30:83:0.422:2	0/1:41,37:31:78:0.474:2	0/1:0,9:31:9:1.00:2	0/1:0,95:30:95:1.00:2	./.	0/1:0,134:30:134:1.00:2	0/1:0,165:31:165:1.00:2	0/1:3,160:31:164:0.982:2	0/1:0,114:32:115:1.00:2	0/1:1,135:30:137:0.993:2	0/1:0,103:30:104:1.00:2
chr13	25029295	rs7140044	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:35,32:31:67:0.478:2	0/1:25,34:31:59:0.576:2	./.	./.	0/1:74,68:30:142:0.479:2	./.	./.	./.	./.	./.	./.
chr13	25033393	rs9581061	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,13:30:34:0.382:2	./.	./.	./.	./.	./.	./.
chr13	25033470	rs3783078	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,16:29:32:0.500:2	./.	./.	./.	./.	./.	./.
chr13	25034161	rs34385526	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,29:32:55:0.527:2	./.	./.	./.	./.	./.	./.
chr13	25043158	rs201283074	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:30:44:0.091:2	./.	./.	./.	0/1:47,4:31:51:0.078:2
chr13	25044054	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:33:97:0.041:2	0/1:110,7:33:117:0.060:2	./.	./.	./.
chr13	25044056	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:30:100:0.040:2	./.	./.	./.	./.
chr13	25044059	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:31:100:0.040:2	0/1:114,7:31:121:0.058:2	./.	./.	./.
chr13	25044068	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:32:104:0.038:2	0/1:112,5:32:117:0.043:2	./.	./.	./.
chr13	25049676	rs73463182	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:33,50:32:83:0.602:2	0/1:25,18:33:43:0.419:2	./.	./.	0/1:1,61:32:62:0.984:2	./.	./.	./.	./.	./.	./.
chr13	25052261	rs4770696	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:30,16:29:46:0.348:2	0/1:7,5:32:12:0.417:2	0/1:3,3:32:6:0.500:2	./.	0/1:31,21:30:52:0.404:2	0/1:40,25:32:65:0.385:2	0/1:33,22:32:55:0.400:2	0/1:2,58:31:60:0.967:2	./.	0/1:33,12:31:45:0.267:2	0/1:30,14:32:45:0.318:2
chr13	25052314	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,5:31:94:0.053:2	./.	./.	./.	./.	0/1:85,5:31:90:0.056:2	./.	./.
chr13	25052321	rs149727830	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,10:28:106:0.094:2	./.	./.	./.	./.	0/1:93,6:28:99:0.061:2	./.	./.
chr13	25052393	rs79107024	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:70,9:31:79:0.114:2	0/1:38,6:32:44:0.136:2	./.	0/1:100,49:31:149:0.329:2	0/1:77,14:30:91:0.154:2	0/1:108,15:31:123:0.122:2	./.	./.	0/1:121,22:32:145:0.154:2	./.	./.
chr13	25058867	rs143070451	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,7:31:77:0.091:2	./.	./.	./.	./.	./.	./.
chr13	25068808	rs9318600	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,33:31:83:0.398:2	./.	./.	./.	./.	./.	./.
chr13	25072275	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:31:92:0.043:2	./.	./.	./.
chr13	25075859	rs1539096	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:36,37:33:73:0.507:2	0/1:31,17:33:48:0.354:2	./.	./.	0/1:0,35:32:35:1.00:2	0/1:34,18:32:52:0.346:2	0/1:17,19:32:36:0.528:2	0/1:0,55:33:55:1.00:2	./.	0/1:37,29:33:66:0.439:2	0/1:62,33:33:95:0.347:2
chr13	25075864	rs35200240	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,28:33:66:0.424:2	./.
chr13	25077856	rs111377921	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,7:28:34:0.206:2	./.	./.	./.	./.	./.	./.
chr13	25255705	rs41288276	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:15,13:33:28:0.464:2	0/1:14,15:31:29:0.517:2	./.	./.	0/1:5,5:31:10:0.500:2	./.	./.	./.	./.	./.	./.
chr13	25264847	rs146944052	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:11,11:32:22:0.500:2	0/1:4,4:32:8:0.500:2	./.	./.	0/1:7,4:32:11:0.364:2	./.	./.	./.	./.	./.	./.
chr13	25265139	rs2071490	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,52:32:108:0.481:2	0/1:51,29:32:80:0.363:2	0/1:4,7:32:11:0.636:2	0/1:92,66:33:158:0.418:2	./.	./.	./.	./.	./.	0/1:59,58:32:117:0.496:2	./.
chr13	25266932	rs963984	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:32,26:30:58:0.448:2	0/1:6,14:30:20:0.700:2	./.	./.	./.	./.	./.	./.	./.	0/1:26,18:29:44:0.409:2	./.
chr13	25272870	rs2289901	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,15:32:35:0.429:2	0/1:16,12:31:28:0.429:2	./.	./.	0/1:29,25:31:54:0.463:2	0/1:19,16:30:35:0.457:2	./.	0/1:23,50:30:73:0.685:2	0/1:19,18:30:37:0.486:2	./.	./.
chr13	25274913	rs9511415	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,31:31:50:0.620:2	./.	./.	./.	./.	./.	./.
chr13	25283539	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:33:66:0.061:2	./.	./.
chr13	25283596	rs2289909	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,24:32:62:0.387:2
chr13	25356053	rs9707144	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:30:35:1.00:2	0/1:0,13:29:13:1.00:2	0/1:6,3:32:9:0.333:2	0/1:21,20:30:41:0.488:2	./.	0/1:29,11:28:40:0.275:2	0/1:0,19:29:19:1.00:2	./.	0/1:43,13:32:56:0.232:2	0/1:30,16:29:46:0.348:2	./.
chr13	25363477	rs11616245	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,28:31:54:0.519:2	0/1:12,14:31:26:0.538:2	./.	./.	./.	0/1:7,17:30:24:0.708:2	0/1:0,18:30:18:1.00:2	./.	0/1:23,15:31:38:0.395:2	./.	./.
chr13	25367282	rs1451568	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,22:32:48:0.458:2	0/1:8,19:32:27:0.704:2	./.	./.	./.	0/1:37,20:32:57:0.351:2	0/1:0,38:32:38:1.00:2	./.	0/1:34,27:32:61:0.443:2	./.	./.
chr13	25367301	rs1158061	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:27,31:33:58:0.534:2	0/1:22,10:33:32:0.313:2	./.	0/1:16,20:32:36:0.556:2	./.	./.	./.	./.	./.	0/1:11,26:33:37:0.703:2	./.
chr13	25374636	rs35957316	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,17:34:32:0.531:2	0/1:17,10:33:27:0.370:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	25378476	rs9511451	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:53,5:31:58:0.086:2	./.	./.	0/1:35,38:31:73:0.521:2	0/1:0,36:29:36:1.00:2	0/1:33,31:30:64:0.484:2	./.	0/1:34,20:30:54:0.370:2	0/1:49,44:30:94:0.473:2	./.	0/1:0,79:29:79:1.00:2
chr13	25399778	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr13	25419176	rs6490984	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,55:29:55:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,43:31:43:1.00:2	0/1:1,53:30:54:0.981:2	0/1:0,75:31:75:1.00:2
chr13	25440318	rs9507425	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,9:31:18:0.500:2	0/1:94,57:31:151:0.377:2	0/1:1,77:31:78:0.987:2	0/1:88,70:31:158:0.443:2	./.	0/1:101,55:31:156:0.353:2	0/1:107,86:32:193:0.446:2	./.	0/1:7,164:32:171:0.959:2
chr13	25444744	rs188493382	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,28:33:83:0.337:2	./.	./.	./.	./.
chr13	25457454	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:31:131:0.031:2	./.	./.	./.	./.	./.
chr13	25466955	rs3742165	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:77,60:32:137:0.438:2	0/1:48,37:32:85:0.435:2	0/1:12,12:33:24:0.500:2	0/1:71,67:33:138:0.486:2	./.	./.	0/1:6,113:31:119:0.950:2	./.	0/1:79,55:31:134:0.410:2	0/1:94,71:32:165:0.430:2	./.
chr13	25479541	rs17402892	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,175:32:180:0.978:2	0/1:98,73:33:171:0.427:2	./.	0/1:124,62:31:186:0.333:2	./.	./.	0/1:82,110:32:192:0.573:2
chr13	25479605	rs78628025	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,95:32:193:0.492:2	./.	./.	./.	./.	./.
chr13	25479878	rs79951875	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,51:30:110:0.464:2	./.	./.	./.	./.	./.
chr13	25480616	rs17081368	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,30:32:69:0.435:2	0/1:30,21:32:51:0.412:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	25486847	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:32:185:0.022:2	./.	./.	./.	./.	./.
chr13	25486911	rs9511510	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,98:32:99:0.990:2	0/1:74,60:31:134:0.448:2	./.	0/1:60,43:31:103:0.417:2	./.	./.	0/1:88,66:32:154:0.429:2
chr13	25670676	rs117014540	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,73:31:152:0.480:2	./.	./.	./.	./.	./.	./.	./.
chr13	25670851	rs75475407	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:30:65:0.062:2	./.	./.	./.	./.
chr13	25670903	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,7:31:80:0.088:2	./.	./.	./.	0/1:144,4:33:148:0.027:2
chr13	25670907	rs76264750	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,7:31:83:0.084:2	./.	./.	./.	0/1:138,5:31:143:0.035:2
chr13	25671143	rs78671990	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:107,4:32:111:0.036:2	./.	./.	./.	./.	0/1:152,8:30:160:0.050:2	./.
chr13	25671172	rs79593984	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:132,4:31:136:0.029:2	./.	./.	./.	./.	0/1:161,9:30:170:0.053:2	./.
chr13	25671188	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:142,4:31:146:0.027:2	./.	./.	./.	./.	0/1:151,9:30:160:0.056:2	./.
chr13	25671214	rs201081849	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:123,5:33:128:0.039:2	./.	./.	./.	./.	0/1:168,5:34:173:0.029:2	./.	./.
chr13	25671271	rs79246694	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:132,4:33:136:0.029:2	./.	./.	0/1:142,5:33:147:0.034:2	./.	./.	./.	0/1:152,6:32:158:0.038:2	0/1:175,12:34:187:0.064:2	0/1:167,12:33:179:0.067:2	./.
chr13	25671274	rs76994938	C	T,A	.	PASS	AC=3,1;AF=0.250,0.083;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant10	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	0/1:31:136:0.037:2	./.	./.	./.	0/2:32:144:0.035:2	./.	./.	0/1:31:157:0.039:2	./.	0/1:32:180:0.067:2	./.
chr13	25671292	rs80261016	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:130,21:31:151:0.139:2	0/1:105,15:31:120:0.125:2	./.	0/1:130,23:31:153:0.150:2	0/1:144,4:31:148:0.027:2	0/1:163,16:30:179:0.089:2	./.	0/1:151,14:30:165:0.085:2	0/1:161,26:31:187:0.139:2	0/1:155,28:31:183:0.153:2	0/1:153,9:31:162:0.056:2
chr13	25671320	.	A	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:126,21:33:147:0.143:2	0/1:105,20:32:125:0.160:2	0/1:25,6:33:31:0.194:2	0/1:127,29:32:157:0.186:2	0/1:153,6:32:159:0.038:2	0/1:167,23:32:190:0.121:2	./.	0/1:148,14:33:162:0.086:2	./.	./.	0/1:143,12:30:155:0.077:2
chr13	25671369	rs76804900	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:132,43:30:176:0.246:2	0/1:84,28:31:112:0.250:2	./.	0/1:139,46:30:185:0.249:2	0/1:145,10:31:155:0.065:2	0/1:170,23:30:194:0.119:2	0/1:173,8:30:181:0.044:2	0/1:159,31:30:190:0.163:2	0/1:170,22:32:192:0.115:2	0/1:147,32:31:180:0.179:2	0/1:159,18:29:179:0.102:2
chr13	25671398	rs77306665	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:140,24:32:164:0.146:2	0/1:85,16:32:101:0.158:2	./.	0/1:160,27:31:187:0.144:2	0/1:142,7:32:149:0.047:2	0/1:162,9:30:171:0.053:2	0/1:186,5:31:191:0.026:2	0/1:155,23:31:178:0.129:2	0/1:180,8:30:188:0.043:2	0/1:162,17:33:179:0.095:2	0/1:147,10:31:157:0.064:2
chr13	25671429	rs77466429	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:147,9:31:157:0.058:2	0/1:80,7:32:87:0.080:2	./.	0/1:173,4:33:178:0.023:2	0/1:130,4:31:136:0.030:2	./.	./.	0/1:154,14:31:168:0.083:2	./.	0/1:156,7:30:163:0.043:2	./.
chr13	25672104	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,3:34:53:0.057:2	./.	./.	./.	./.
chr13	25672895	rs9581259	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,12:30:12:1.00:2	./.	0/1:11,4:30:15:0.267:2	0/1:8,6:30:14:0.429:2	0/1:5,4:30:9:0.444:2	./.	0/1:4,5:28:9:0.556:2	0/1:14,9:31:23:0.391:2
chr13	25715792	rs143780889	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,10:31:14:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.
chr13	25744148	rs150740704	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,29:31:66:0.446:2	./.	./.	./.	./.	./.
chr13	25744241	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,5:31:57:0.088:2
chr13	25823441	rs62619824	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:34,28:31:62:0.452:2	0/1:20,20:32:40:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:39,24:31:63:0.381:2	./.
chr13	25823451	rs17082035	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:42,26:33:68:0.382:2	0/1:24,20:33:44:0.455:2	./.	./.	./.	./.	./.	./.	./.	0/1:33,25:32:58:0.431:2	./.
chr13	25825889	rs4312169	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,31:33:65:0.477:2	0/1:22,6:32:28:0.214:2	0/1:0,5:33:5:1.00:2	0/1:0,64:32:64:1.00:2	0/1:35,15:31:50:0.300:2	0/1:23,34:32:57:0.596:2	0/1:0,55:32:55:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,69:33:69:1.00:2	0/1:30,29:33:59:0.492:2	0/1:0,88:33:88:1.00:2
chr13	25831888	rs7995033	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:33:3:1.00:2	0/1:0,17:33:17:1.00:2	0/1:12,4:32:16:0.250:2	0/1:11,11:30:22:0.500:2	0/1:0,16:31:16:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,13:34:13:1.00:2	0/1:14,11:32:25:0.440:2	0/1:0,27:33:27:1.00:2
chr13	25839959	rs142057652	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,6:31:20:0.300:2	./.	./.	./.
chr13	25876011	rs11556093	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:29:28:1.00:2	0/1:0,27:30:27:1.00:2	0/1:2,4:30:6:0.667:2	0/1:26,19:28:45:0.422:2	0/1:22,14:29:36:0.389:2	./.	0/1:0,27:29:27:1.00:2	0/1:1,26:29:27:0.963:2	0/1:0,47:30:47:1.00:2	0/1:19,14:28:33:0.424:2	0/1:21,17:29:38:0.447:2
chr13	25882049	rs200411850	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,6:17:37:0.162:2
chr13	25883385	rs371748238	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,4:31:39:0.103:2	./.	./.	./.	./.
chr13	26043182	rs7317185	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,68:29:120:0.567:2	./.	0/1:38,46:29:84:0.548:2	0/1:66,74:27:140:0.529:2	./.	./.	./.	./.
chr13	26112167	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,16:30:160:0.100:2	./.
chr13	26112189	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,33:31:124:0.266:2	./.	./.
chr13	26148966	rs6491066	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:0,57:32:57:1.00:2	./.	0/1:59,48:32:107:0.449:2	0/1:0,29:31:29:1.00:2	0/1:1,72:31:73:0.986:2	0/1:1,28:32:29:0.966:2	0/1:59,34:32:93:0.366:2	0/1:0,104:33:104:1.00:2	0/1:0,67:32:67:1.00:2	0/1:2,151:33:153:0.987:2
chr13	26153950	rs201822155	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,6:23:32:0.188:2	./.	./.	0/1:43,13:23:56:0.232:2	0/1:35,9:27:44:0.205:2	0/1:38,7:26:45:0.156:2	0/1:41,10:24:51:0.196:2	0/1:50,10:26:60:0.167:2	0/1:45,7:29:52:0.135:2	0/1:34,13:25:47:0.277:2	0/1:37,8:29:45:0.178:2
chr13	26153954	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,5:22:40:0.125:2	./.	./.	./.	./.	./.	./.
chr13	26273385	rs6491088	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:33:60:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,73:34:73:1.00:2	0/1:0,126:32:126:1.00:2	0/1:0,85:33:85:1.00:2	0/1:0,115:33:115:1.00:2	0/1:0,104:33:104:1.00:2	0/1:0,78:34:78:1.00:2	0/1:0,97:33:97:1.00:2	0/1:0,73:33:73:1.00:2
chr13	26343257	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:32:59:0.068:2	./.
chr13	26621188	rs183762831	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:27:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr13	26788114	rs301047	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:72,74:33:147:0.507:2	0/1:53,55:32:108:0.509:2	./.	./.	0/1:99,79:33:179:0.444:2	0/1:101,86:33:187:0.460:2	./.	./.	0/1:100,84:34:184:0.457:2	./.	./.
chr13	26788279	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,60:30:111:0.541:2	0/1:34,47:30:81:0.580:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	26788394	rs150137875	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,91:31:174:0.523:2	./.	./.	./.
chr13	26788698	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,4:28:21:0.190:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	26789231	rs147423327	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,45:31:110:0.409:2	./.	./.	./.	./.	./.
chr13	26911708	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,3:34:75:0.040:2
chr13	26975691	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,4:33:79:0.051:2	./.	./.	./.	./.	./.	./.	./.
chr13	27250823	rs3764108	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,63:29:63:1.00:2	0/1:0,61:29:61:1.00:2	0/1:32,21:29:53:0.396:2	./.	./.	0/1:33,30:30:63:0.476:2	./.
chr13	27334024	rs76476101	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,8:31:21:0.381:2	./.	0/1:17,4:24:21:0.190:2	./.	./.	0/1:11,13:27:24:0.542:2
chr13	27334084	rs9581737	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	0/1:18,15:31:33:0.455:2	./.	./.	./.	0/1:19,14:32:33:0.424:2	0/1:10,9:32:19:0.474:2	./.
chr13	27334183	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:33:79:0.051:2	./.	./.	./.	./.	./.
chr13	27645235	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,6:31:194:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr13	27645259	.	T	A,C	.	PASS	AC=1,1;AF=0.167,0.167;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:BQ:DP:FA:SS	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0/2:29:190:0.032:2	./.	./.	./.	./.	./.	0/1:32:165:0.024:2	./.
chr13	27645266	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:32:161:0.025:2	./.
chr13	27645278	rs202083728	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,5:32:136:0.037:2	./.
chr13	27649448	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.
chr13	27649466	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:32:51:0.078:2	./.
chr13	27649490	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:32:41:0.098:2	./.
chr13	27664279	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:31:132:0.030:2	./.	./.	./.	./.	./.
chr13	27669852	rs116940052	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,59:32:130:0.454:2	./.	./.	./.	./.	./.
chr13	27679905	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,3:32:32:0.094:2	./.	./.	./.	./.
chr13	27745778	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,3:32:16:0.188:2	./.
chr13	28008340	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:31:85:0.047:2	./.	./.
chr13	28009031	rs7323	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:36,47:33:84:0.566:2	0/1:19,11:33:30:0.367:2	./.	./.	./.	./.	./.	0/1:45,31:32:76:0.408:2	./.	./.	0/1:52,34:33:86:0.395:2
chr13	28009851	rs7669	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:32:4:0.750:2	0/1:27,37:31:64:0.578:2	./.	./.	./.	./.	./.	0/1:36,29:31:65:0.446:2	0/1:53,39:30:92:0.424:2
chr13	28009920	rs1218825	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:33:82:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,91:33:91:1.00:2	0/1:0,70:32:71:1.00:2	0/1:0,78:32:79:1.00:2	0/1:0,65:33:65:1.00:2	0/1:0,86:33:86:1.00:2	0/1:0,102:33:102:1.00:2	0/1:0,60:33:60:1.00:2	0/1:0,101:33:101:1.00:2
chr13	28010000	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,6:31:63:0.095:2	./.	./.	./.	./.	./.
chr13	28014173	rs140262959	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,21:32:56:0.375:2	0/1:12,25:30:37:0.676:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	28130473	rs115119970	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,30:33:81:0.370:2	./.	./.	./.	./.	./.	./.
chr13	28143229	rs8002697	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:38,21:32:59:0.356:2	0/1:31,14:32:45:0.311:2	./.	0/1:0,79:33:79:1.00:2	0/1:39,39:32:78:0.500:2	0/1:0,90:32:90:1.00:2	./.	0/1:49,43:33:92:0.467:2	0/1:33,31:33:64:0.484:2	0/1:0,72:32:72:1.00:2	0/1:34,27:33:61:0.443:2
chr13	28239926	rs138599839	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,14:31:35:0.400:2	0/1:8,11:31:19:0.579:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	28239940	rs11029	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:14,16:33:30:0.533:2	0/1:13,9:33:22:0.409:2	./.	./.	0/1:21,17:32:38:0.447:2	./.	0/1:21,17:31:38:0.447:2	./.	0/1:41,15:34:57:0.268:2	./.	0/1:17,25:33:42:0.595:2
chr13	28239970	rs14105	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:13,18:32:31:0.581:2	0/1:13,13:31:26:0.500:2	./.	./.	0/1:30,16:30:46:0.348:2	./.	0/1:32,28:31:60:0.467:2	./.	0/1:36,17:33:53:0.321:2	./.	0/1:15,23:32:38:0.605:2
chr13	28367061	rs1231058	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2
chr13	28519653	rs75863106	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,37:30:89:0.416:2	./.	./.	./.	./.
chr13	28537317	rs1805107	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:31:48:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,7:29:7:1.00:2	0/1:29,17:31:46:0.370:2	0/1:28,20:31:48:0.417:2	0/1:0,48:31:48:1.00:2	0/1:43,23:31:66:0.348:2	0/1:0,57:30:57:1.00:2	0/1:27,29:32:56:0.518:2	0/1:0,31:30:31:1.00:2	0/1:37,20:32:57:0.351:2
chr13	28562605	rs3897926	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,6:25:20:0.300:2	0/1:39,19:28:58:0.328:2	./.	0/1:21,18:27:39:0.462:2	0/1:0,40:28:40:1.00:2	0/1:21,36:28:57:0.632:2	./.
chr13	28623587	rs35602083	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,11:32:22:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr13	28624294	rs1933437	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,42:31:94:0.447:2	0/1:41,23:32:64:0.359:2	0/1:11,7:32:18:0.389:2	0/1:55,50:31:105:0.476:2	0/1:46,40:31:86:0.465:2	0/1:85,48:31:133:0.361:2	0/1:64,33:31:97:0.340:2	./.	0/1:84,64:32:148:0.432:2	0/1:58,27:31:85:0.318:2	0/1:56,67:31:123:0.545:2
chr13	28636084	rs7338903	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:31:57:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,63:32:63:1.00:2	0/1:1,57:32:58:0.983:2	0/1:0,65:31:65:1.00:2	0/1:0,69:31:69:1.00:2
chr13	28748524	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:30:55:0.073:2
chr13	28794511	rs45530141	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:33:9:0.333:2	./.	./.	./.	./.	0/1:39,22:31:61:0.361:2	./.	./.	./.
chr13	28866586	rs149369530	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,53:33:121:0.438:2	0/1:58,53:33:111:0.477:2	./.	./.
chr13	28883061	rs7993418	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,24:32:24:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,2:32:2:1.00:2	./.	0/1:0,23:30:23:1.00:2	0/1:2,29:31:31:0.935:2	0/1:12,8:32:20:0.400:2	0/1:0,23:32:23:1.00:2	0/1:0,36:32:36:1.00:2	0/1:17,6:32:23:0.261:2	0/1:28,22:32:50:0.440:2
chr13	28893642	rs2296189	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,37:29:76:0.487:2
chr13	28903835	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,5:32:156:0.032:2	./.	./.	./.	./.
chr13	28964198	rs17537350	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,24:31:52:0.462:2	./.	./.	./.	./.	./.	./.
chr13	28973259	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:31:154:0.026:2	./.	./.	./.
chr13	29275102	rs947027	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,91:32:91:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,148:32:148:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,167:33:167:1.00:2	0/1:0,88:32:89:1.00:2	0/1:0,175:33:175:1.00:2
chr13	29275129	rs705423	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,39:31:80:0.488:2	0/1:36,22:32:58:0.379:2	0/1:0,12:31:12:1.00:2	0/1:2,76:31:78:0.974:2	0/1:44,20:30:64:0.313:2	./.	0/1:33,16:30:49:0.327:2	0/1:61,33:31:94:0.351:2	0/1:93,49:32:142:0.345:2	0/1:58,23:31:81:0.284:2	0/1:107,52:31:160:0.327:2
chr13	29275635	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:30:112:0.036:2	./.	./.	./.
chr13	29599248	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:32:75:0.053:2	./.	./.	./.	./.	./.
chr13	29599410	rs116224145	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,24:31:48:0.500:2	./.	./.	./.	./.
chr13	29599609	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,4:31:100:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr13	29600415	rs2987346	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,45:32:76:0.592:2	./.	./.	./.	./.
chr13	29600571	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr13	29675049	rs140464903	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,14:32:32:0.438:2	./.	./.	./.	0/1:19,6:33:25:0.240:2	./.	0/1:11,12:33:23:0.522:2
chr13	29898768	rs928661	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:31:48:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,44:32:44:1.00:2	0/1:1,21:30:22:0.955:2	0/1:0,36:30:36:1.00:2	0/1:29,11:31:40:0.275:2	0/1:0,43:30:43:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,56:30:56:1.00:2
chr13	29898848	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:28:73:0.055:2	./.
chr13	30091714	rs2482089	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:31:86:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,80:30:80:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,77:30:77:1.00:2	0/1:0,94:30:94:1.00:2	0/1:0,105:31:105:1.00:2	0/1:0,67:30:67:1.00:2	0/1:0,121:31:121:1.00:2
chr13	30091819	rs2482090	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:32:87:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,77:31:77:1.00:2	0/1:0,109:31:109:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,121:32:121:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,152:32:152:1.00:2
chr13	30097417	rs117900613	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,16:32:33:0.485:2	./.	./.	./.
chr13	30097418	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,4:29:16:0.250:2	./.	./.	./.	./.	./.	./.	./.
chr13	30104749	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,4:30:122:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr13	30107118	rs200789208	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,8:13:33:0.242:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,7:21:42:0.167:2
chr13	30784566	rs11617724	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,46:28:118:0.390:2	./.	./.	./.	./.	./.
chr13	30804719	rs202084	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,4:31:19:0.211:2	./.	./.	./.	./.	./.	./.	./.
chr13	30829633	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:35:60:0.067:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	30854202	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:32:47:0.085:2	./.	./.	./.	./.	./.
chr13	31036681	rs1929606	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,155:30:155:1.00:2	0/1:0,100:30:100:1.00:2	0/1:0,27:30:27:1.00:2	0/1:1,174:30:175:0.994:2	0/1:0,138:30:138:1.00:2	0/1:0,175:30:175:1.00:2	0/1:0,113:30:113:1.00:2	0/1:0,161:30:161:1.00:2	0/1:0,167:31:168:1.00:2	0/1:0,170:30:170:1.00:2	0/1:1,168:30:169:0.994:2
chr13	31036837	rs1060348	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,15:32:27:0.556:2	0/1:11,13:31:24:0.542:2	./.	./.	./.	./.	./.	./.	0/1:13,11:32:24:0.458:2	./.	./.
chr13	31205275	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:31:51:0.078:2	./.
chr13	31221068	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:31:61:0.066:2	./.	./.
chr13	31221106	rs3742303	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,34:33:75:0.453:2
chr13	31231778	rs17609459	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,19:32:54:0.358:2	./.	./.	./.	./.	./.	./.
chr13	31231806	rs7984952	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,31:33:57:0.544:2	0/1:15,29:32:44:0.659:2	./.	0/1:43,35:33:78:0.449:2	0/1:0,69:32:69:1.00:2	0/1:46,35:32:81:0.432:2	0/1:57,63:33:120:0.525:2	0/1:65,58:33:123:0.472:2	./.	./.	0/1:0,89:33:89:1.00:2
chr13	31233063	rs3742302	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,14:32:45:0.311:2	0/1:12,11:32:23:0.478:2	./.	0/1:22,18:31:40:0.450:2	0/1:1,35:31:36:0.972:2	0/1:31,31:31:62:0.500:2	0/1:31,13:31:44:0.295:2	0/1:41,22:31:63:0.349:2	./.	./.	0/1:0,44:32:44:1.00:2
chr13	31326242	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:32:147:0.027:2	./.
chr13	31495179	rs11841583	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,12:32:18:0.667:2	./.	./.	./.	./.	./.	0/1:58,75:32:133:0.564:2	./.	./.
chr13	31495733	rs6563571	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	./.	./.	./.	./.	0/1:30,39:34:69:0.565:2	./.	./.
chr13	31513839	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:33:64:0.063:2	./.	./.
chr13	31531009	rs12857479	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,8:31:14:0.571:2	0/1:37,20:32:57:0.351:2	./.	0/1:0,51:32:51:1.00:2	0/1:28,16:32:44:0.364:2	0/1:36,11:33:47:0.234:2	./.	0/1:28,20:32:48:0.417:2	0/1:54,30:32:84:0.357:2
chr13	31543095	rs2274869	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,26:31:67:0.388:2	0/1:23,18:31:41:0.439:2	./.	./.	0/1:40,23:32:63:0.365:2	./.	./.	0/1:25,50:31:75:0.667:2
chr13	31725260	rs11556147	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:33:11:1.00:2	0/1:37,31:33:68:0.456:2	0/1:21,24:32:45:0.533:2	0/1:28,30:32:58:0.517:2	0/1:33,18:33:51:0.353:2	0/1:2,74:33:76:0.974:2	0/1:20,32:34:52:0.615:2	0/1:35,17:33:52:0.327:2	0/1:1,93:33:95:0.989:2
chr13	31729729	rs1047086	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,21:30:21:1.00:2	0/1:64,45:29:109:0.413:2	0/1:40,36:29:76:0.474:2	0/1:73,45:30:118:0.381:2	0/1:31,27:29:58:0.466:2	0/1:2,104:29:106:0.981:2	0/1:84,62:30:146:0.425:2	0/1:74,46:29:120:0.383:2	0/1:0,139:29:139:1.00:2
chr13	31821240	rs9564692	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,94:33:95:0.989:2	0/1:0,57:32:57:1.00:2	./.	0/1:2,137:31:139:0.986:2	./.	0/1:59,80:32:139:0.576:2	0/1:56,59:32:115:0.513:2	./.	./.	0/1:52,37:33:89:0.416:2	./.
chr13	31821992	rs4943266	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:33:16:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,22:33:22:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,25:32:25:1.00:2
chr13	31891743	rs34638481	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,31:32:77:0.403:2	0/1:20,29:32:49:0.592:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	31891746	rs1041073	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:32:74:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,132:32:132:1.00:2	0/1:58,51:31:109:0.468:2	0/1:0,118:31:118:1.00:2	0/1:3,116:31:119:0.975:2	0/1:75,85:31:160:0.531:2	0/1:60,53:32:114:0.469:2	0/1:67,38:31:105:0.362:2	0/1:0,102:31:102:1.00:2
chr13	31897996	rs80166501	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:102,10:24:112:0.089:2	./.	./.	./.	./.	./.	./.	0/1:137,12:15:149:0.081:2	0/1:149,17:19:167:0.102:2	0/1:133,14:20:147:0.095:2	0/1:117,11:15:128:0.086:2
chr13	32335880	rs9532479	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,11:32:39:0.282:2	0/1:20,21:31:41:0.512:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	32360547	rs7325513	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,65:32:65:1.00:2	0/1:0,35:32:35:1.00:2	./.	0/1:40,37:32:77:0.481:2	0/1:29,26:32:55:0.473:2	./.	0/1:2,51:33:53:0.962:2	0/1:40,43:32:83:0.518:2	0/1:50,48:33:98:0.490:2	0/1:0,67:33:67:1.00:2	0/1:61,41:32:102:0.402:2
chr13	32360583	rs9549106	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,13:33:35:0.371:2	./.	0/1:15,11:32:26:0.423:2	0/1:20,23:31:43:0.535:2	./.	./.	./.
chr13	32371361	rs17076657	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,43:29:109:0.394:2	./.	0/1:54,42:29:96:0.438:2	0/1:76,84:29:160:0.525:2	./.	./.	./.
chr13	32676096	rs12428144	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,14:31:33:0.424:2	./.	0/1:20,9:30:29:0.310:2	./.	./.	./.	./.	./.
chr13	32676114	rs364995	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,27:29:50:0.540:2	0/1:15,10:27:25:0.400:2	0/1:0,7:31:7:1.00:2	0/1:26,25:28:51:0.490:2	0/1:18,27:26:45:0.600:2	0/1:17,27:29:44:0.614:2	0/1:20,22:29:42:0.524:2	0/1:0,52:28:52:1.00:2	0/1:0,66:30:66:1.00:2	./.	0/1:32,32:29:64:0.500:2
chr13	32747654	rs17077179	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:71,57:32:128:0.445:2	0/1:25,20:32:45:0.444:2	./.	0/1:57,48:32:105:0.457:2	./.	./.	./.	./.	./.	./.	./.
chr13	32753937	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:31:67:0.060:2	./.	./.	./.
chr13	32776153	rs9567420	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,49:29:78:0.628:2	./.	./.	./.	0/1:22,30:29:52:0.577:2	./.
chr13	32776584	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:30:77:0.052:2	./.	./.	./.
chr13	32776603	rs2428249	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,33:29:69:0.478:2	0/1:13,13:29:26:0.500:2	./.	0/1:32,35:30:67:0.522:2	0/1:45,26:30:71:0.366:2	0/1:39,18:29:57:0.316:2	./.	0/1:34,33:30:67:0.493:2	0/1:26,33:30:59:0.559:2	0/1:19,15:28:34:0.441:2	./.
chr13	32776616	rs61750791	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,35:32:55:0.636:2	./.	./.	./.	0/1:20,16:32:36:0.444:2	./.
chr13	32785086	rs798981	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,29:30:62:0.475:2	0/1:3,8:30:11:0.727:2	./.	0/1:29,36:31:65:0.554:2	0/1:35,14:29:49:0.286:2	0/1:26,17:30:43:0.395:2	./.	0/1:39,38:29:77:0.494:2	0/1:42,43:31:85:0.506:2	0/1:31,25:30:58:0.446:2	./.
chr13	32799962	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,41:31:156:0.263:2	./.	./.	./.	./.	./.
chr13	32811607	rs2806639	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:33:7:0.571:2	0/1:1,45:32:46:0.978:2	./.	0/1:26,20:32:46:0.435:2	./.	0/1:28,18:32:46:0.391:2	0/1:21,30:34:51:0.588:2	./.	0/1:18,16:31:34:0.471:2
chr13	32813873	rs193120945	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,6:32:21:0.286:2	./.	./.	./.	./.
chr13	32828460	rs192351218	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:32:16:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr13	32832149	rs2520686	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,123:29:124:0.992:2	0/1:1,74:29:75:0.987:2	./.	./.	0/1:50,40:28:90:0.444:2	0/1:81,55:29:136:0.404:2	0/1:48,34:30:82:0.415:2	0/1:82,70:30:152:0.461:2	0/1:78,65:29:143:0.455:2	0/1:49,60:29:109:0.550:2	0/1:81,62:29:143:0.434:2
chr13	32863841	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:34:117:0.034:2
chr13	32884771	rs206111	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:68,46:33:114:0.404:2	0/1:40,35:32:75:0.467:2	0/1:6,5:32:11:0.455:2	0/1:68,76:33:144:0.528:2	0/1:64,33:31:97:0.340:2	0/1:57,60:32:117:0.513:2	0/1:68,66:32:134:0.493:2	0/1:92,61:32:153:0.399:2	0/1:69,65:33:134:0.485:2	0/1:0,120:32:120:1.00:2	0/1:0,114:32:114:1.00:2
chr13	32885654	rs445909	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	./.	./.
chr13	32885819	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:33:103:0.039:2	./.	./.	./.	./.	./.
chr13	32906480	rs766173	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,39:31:84:0.464:2	./.	./.	./.	./.	./.
chr13	32906729	rs144848	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:24,6:32:30:0.200:2	0/1:9,9:32:18:0.500:2	./.	./.	0/1:11,16:32:27:0.593:2	./.	0/1:11,14:32:25:0.560:2	0/1:10,14:33:24:0.583:2	./.	./.	./.
chr13	32906980	rs1801439	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,16:28:34:0.471:2	./.	./.	./.	./.	./.
chr13	32910721	rs1801499	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,34:31:77:0.442:2	./.	./.	./.	./.	./.
chr13	32911463	rs1799944	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,23:32:51:0.451:2	./.	./.	./.	./.	./.
chr13	32911888	rs1801406	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,39:33:39:1.00:2	0/1:13,7:32:20:0.350:2	./.	./.	./.	0/1:23,15:32:38:0.395:2	0/1:8,9:32:17:0.529:2	0/1:29,13:30:42:0.310:2
chr13	32912008	rs1799952	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,16:33:53:0.302:2	./.
chr13	32912299	rs543304	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:9,9:30:18:0.500:2	./.	./.	./.	./.	./.	0/1:9,6:28:15:0.400:2	0/1:11,7:28:18:0.389:2	0/1:10,7:34:17:0.412:2	./.	0/1:11,16:30:27:0.593:2
chr13	32913055	rs206075	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:32:42:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,6:31:6:1.00:2	0/1:1,42:32:43:0.977:2	0/1:0,53:32:54:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,59:33:59:1.00:2	0/1:0,40:32:40:1.00:2	0/1:1,49:32:50:0.980:2
chr13	32914236	rs4987117	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,21:31:60:0.350:2	./.	./.	./.	./.	./.	./.
chr13	32915005	rs206076	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:33:66:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,78:33:78:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,48:33:48:1.00:2	0/1:2,60:32:62:0.968:2	0/1:0,81:33:81:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,89:33:89:1.00:2
chr13	32929232	rs1799955	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,28:30:29:0.966:2	0/1:21,17:28:38:0.447:2	./.	./.	./.	./.	0/1:23,26:30:49:0.531:2	0/1:32,44:29:76:0.579:2
chr13	32929387	rs169547	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:33:82:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,78:33:78:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,101:33:101:1.00:2	0/1:0,115:33:115:1.00:2	0/1:0,109:32:109:1.00:2	0/1:0,144:33:144:1.00:2
chr13	32972626	rs11571833	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,4:31:17:0.235:2	./.	./.	./.
chr13	32977077	rs193282815	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,27:32:57:0.474:2	./.	./.	./.	./.	./.	./.
chr13	33017043	rs3742318	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,34:31:86:0.395:2	0/1:27,29:32:56:0.518:2	./.	./.	./.	0/1:47,43:31:90:0.478:2	0/1:2,34:33:36:0.944:2	0/1:37,33:32:70:0.471:2	./.	0/1:50,30:31:80:0.375:2	./.
chr13	33096361	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,6:31:43:0.140:2	./.
chr13	33101662	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,4:30:20:0.200:2	./.	./.	./.
chr13	33232435	rs2301393	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,43:33:95:0.453:2	0/1:27,35:32:62:0.565:2	0/1:10,6:33:16:0.375:2	0/1:64,41:32:105:0.390:2	0/1:0,54:32:54:1.00:2	0/1:33,51:33:84:0.607:2	0/1:38,28:32:66:0.424:2	0/1:47,46:32:93:0.495:2	0/1:1,102:33:103:0.990:2	./.	0/1:72,82:33:154:0.532:2
chr13	33262605	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,3:35:95:0.032:2	./.
chr13	33284136	rs199567336	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,25:29:51:0.490:2	./.	./.
chr13	33315206	rs733487	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,17:26:35:0.500:2	0/1:18,7:27:25:0.280:2	./.	0/1:21,22:26:43:0.512:2	0/1:1,24:25:25:0.960:2	0/1:36,17:25:53:0.321:2	0/1:12,10:22:24:0.455:2	0/1:24,13:24:37:0.351:2	0/1:0,22:28:23:1.00:2	./.	0/1:32,14:31:47:0.304:2
chr13	33332289	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,3:36:104:0.029:2	./.	./.
chr13	33344334	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,5:30:88:0.057:2	./.	./.	./.	./.	./.	./.
chr13	33590851	rs2772364	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,4:32:4:1.00:2	0/1:0,4:32:4:1.00:2	./.	0/1:0,4:32:4:1.00:2	0/1:0,4:27:4:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,10:28:10:1.00:2	0/1:0,6:32:6:1.00:2
chr13	33627955	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:33:86:0.047:2	./.	./.	./.	./.	./.
chr13	33628138	rs9536314	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,18:32:42:0.429:2	0/1:16,16:32:32:0.500:2	./.	./.	./.	0/1:23,21:32:44:0.477:2	0/1:7,15:31:22:0.682:2	0/1:12,9:31:21:0.429:2	./.	0/1:18,18:33:36:0.500:2	./.
chr13	33628193	rs9527025	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,12:33:45:0.267:2	0/1:12,13:32:25:0.520:2	./.	./.	./.	0/1:38,20:32:58:0.345:2	0/1:12,14:33:26:0.538:2	0/1:17,13:33:30:0.433:2	./.	0/1:22,17:33:39:0.436:2	./.
chr13	33628239	rs9527026	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,18:32:51:0.353:2	0/1:16,16:32:32:0.500:2	./.	./.	./.	0/1:50,24:30:74:0.324:2	0/1:21,10:29:31:0.323:2	0/1:29,22:31:51:0.431:2	./.	0/1:26,26:31:52:0.500:2	./.
chr13	33634983	rs564481	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,55:32:134:0.410:2	0/1:61,58:31:119:0.487:2	./.	./.	0/1:91,70:32:161:0.435:2	0/1:84,63:32:147:0.429:2	./.	0/1:0,126:32:126:1.00:2
chr13	33635463	rs648202	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,33:30:33:1.00:2	0/1:2,29:29:31:0.935:2	./.	0/1:33,26:29:59:0.441:2	0/1:0,21:28:21:1.00:2	0/1:1,23:29:24:0.958:2	0/1:0,24:27:24:1.00:2	0/1:1,31:29:32:0.969:2	0/1:0,32:30:32:1.00:2	0/1:0,32:28:32:1.00:2	0/1:0,55:30:55:1.00:2
chr13	33635835	rs649964	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:29:30:1.00:2	0/1:0,23:28:23:1.00:2	0/1:0,6:28:6:1.00:2	0/1:0,62:29:62:1.00:2	0/1:0,64:29:64:1.00:2	0/1:0,35:27:35:1.00:2	0/1:0,86:28:86:1.00:2	0/1:0,78:29:78:1.00:2	0/1:0,56:30:56:1.00:2	0/1:0,36:28:36:1.00:2	0/1:0,53:28:53:1.00:2
chr13	33685978	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:33:154:0.026:2	./.	./.	./.	./.
chr13	33686968	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,4:30:87:0.046:2	./.	./.	./.	./.	./.	./.
chr13	33700374	rs1980781	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,19:31:36:0.528:2	0/1:49,4:30:53:0.075:2	0/1:20,17:31:37:0.459:2	0/1:21,41:29:62:0.661:2	./.	0/1:25,22:31:47:0.468:2	./.
chr13	33703656	rs495680	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:33:7:1.00:2	0/1:63,60:32:123:0.488:2	0/1:31,36:31:67:0.537:2	./.	0/1:38,42:31:80:0.525:2	0/1:0,105:32:105:1.00:2	0/1:61,54:32:115:0.470:2	0/1:0,56:31:56:1.00:2	0/1:0,79:32:79:1.00:2
chr13	33703666	rs34425674	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,51:32:106:0.481:2	./.	./.	./.	./.	./.	./.	0/1:32,35:33:67:0.522:2
chr13	33704065	rs3742321	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	0/1:21,11:32:32:0.344:2	./.	0/1:11,4:30:15:0.267:2	0/1:16,14:31:30:0.467:2	./.	0/1:18,18:32:36:0.500:2	./.
chr13	33704154	rs596742	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:25,10:33:35:0.286:2	0/1:10,14:32:24:0.583:2	./.	./.	0/1:33,22:30:55:0.400:2	./.	./.	./.	./.	./.	./.
chr13	34404912	rs1805376	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,27:32:50:0.540:2	./.	./.	./.	./.
chr13	35615256	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:31:140:0.029:2	./.	./.	./.
chr13	35615296	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:33:97:0.041:2	./.	./.	./.
chr13	35624460	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,6:31:168:0.036:2	./.	./.	./.	./.
chr13	35624491	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:128:0.031:2	./.	./.	./.	./.
chr13	35632912	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:191,6:31:197:0.030:2	./.	./.	0/1:190,9:31:199:0.045:2	./.	0/1:192,7:30:199:0.035:2	0/1:192,6:25:198:0.030:2	0/1:189,9:31:198:0.045:2	0/1:190,6:31:196:0.031:2	./.	0/1:191,7:32:198:0.035:2
chr13	35632923	.	G	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,3:31:34:0.088:2	./.	./.	0/1:188,9:29:197:0.046:2	0/1:180,10:30:190:0.053:2	0/1:188,6:32:195:0.031:2	./.	0/1:183,11:31:195:0.057:2	./.
chr13	35632992	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,3:32:25:0.120:2	./.	./.	0/1:139,5:31:144:0.035:2	0/1:82,4:31:86:0.047:2	./.	0/1:146,6:32:152:0.039:2	0/1:143,4:32:147:0.027:2	./.
chr13	35644866	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,4:30:42:0.095:2	./.	./.	./.	./.	./.	./.
chr13	35644910	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,4:30:74:0.054:2	./.	./.	./.	./.	./.	./.
chr13	35644911	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,4:30:74:0.054:2	./.	./.	./.	./.	./.	./.
chr13	35672495	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,5:32:116:0.043:2
chr13	35672521	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,5:32:121:0.041:2
chr13	35683457	rs5011296	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,4:34:106:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr13	35683537	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:32:84:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	35683543	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:34:78:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	35684952	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:33:175:0.023:2	./.	./.	./.
chr13	35685022	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:32:166:0.024:2	./.	./.	./.
chr13	35691549	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,4:32:70:0.057:2	./.	./.	./.	./.	./.	./.	./.
chr13	35691560	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,4:32:78:0.051:2	./.	./.	./.	./.	./.	./.	./.
chr13	35692547	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:32:130:0.031:2	./.	./.	./.
chr13	35692561	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,6:32:137:0.044:2	./.	./.	./.
chr13	35692587	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:32:111:0.036:2	./.	./.	./.
chr13	35697631	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,4:31:68:0.059:2	./.	./.	./.	./.	./.	./.	0/1:119,6:31:125:0.048:2
chr13	35697709	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:33:144:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	36051321	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:34:81:0.049:2	./.
chr13	36158038	rs189755961	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,10:33:28:0.357:2	./.	./.	./.	./.	./.	./.	./.
chr13	36202269	rs11538677	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:52,65:33:117:0.556:2	0/1:42,45:32:87:0.517:2	./.	./.	./.	./.	./.	0/1:83,72:32:155:0.465:2	./.	./.	./.
chr13	36225929	rs7991019	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,28:33:61:0.459:2	0/1:17,27:32:44:0.614:2	0/1:24,40:32:64:0.625:2	0/1:15,15:33:30:0.500:2	0/1:39,23:33:62:0.371:2	./.	0/1:2,62:33:64:0.969:2	0/1:39,52:34:91:0.571:2
chr13	36229873	rs2274550	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,62:28:133:0.466:2	./.	0/1:68,59:29:127:0.465:2	./.	./.	./.	0/1:51,54:29:105:0.514:2
chr13	36242513	rs41292209	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	0/1:34,31:30:65:0.477:2	./.	./.	./.
chr13	36385031	rs2322807	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,43:31:80:0.538:2	./.	0/1:72,4:33:76:0.053:2	0/1:0,96:32:96:1.00:2	./.	0/1:28,25:30:53:0.472:2	0/1:19,36:32:55:0.655:2
chr13	36396914	rs139958301	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,79:31:173:0.457:2	0/1:58,54:31:112:0.482:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	36402426	rs2296645	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,13:30:26:0.500:2	0/1:10,4:31:14:0.286:2	./.	0/1:0,12:30:12:1.00:2	0/1:9,6:30:15:0.400:2	0/1:21,7:29:28:0.250:2	0/1:15,6:28:21:0.286:2	./.	0/1:18,7:30:25:0.280:2	0/1:23,22:29:45:0.489:2	./.
chr13	36686138	rs3748308	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,8:30:13:0.615:2	./.	0/1:2,98:29:100:0.980:2	./.	./.	./.	./.	0/1:50,51:30:101:0.505:2	./.
chr13	36700174	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,4:33:31:0.129:2
chr13	36744720	rs61750906	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,15:32:27:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.
chr13	36744800	rs2296967	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,106:31:108:0.981:2	./.	./.	0/1:106,64:32:170:0.376:2	./.	0/1:51,56:32:107:0.523:2	./.
chr13	36744861	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:32:171:0.023:2
chr13	36744910	rs2296968	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,31:32:61:0.508:2	./.	./.	./.	./.	./.
chr13	36744920	rs76803829	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,16:28:51:0.314:2	./.	./.	./.	./.
chr13	36801415	rs9546785	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:74,92:31:167:0.554:2	0/1:50,42:32:92:0.457:2	0/1:21,11:30:33:0.344:2	./.	./.	0/1:95,79:32:175:0.454:2	0/1:85,72:32:157:0.459:2	./.	./.	./.	0/1:0,154:32:155:1.00:2
chr13	36828237	rs9546897	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,11:32:21:0.524:2	./.	./.	./.	./.	0/1:15,16:32:31:0.516:2	0/1:14,6:29:20:0.300:2	./.	./.	./.	0/1:0,34:33:34:1.00:2
chr13	36857639	rs1998800	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,34:32:53:0.642:2	0/1:28,23:32:51:0.451:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	36871764	rs2281865	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,12:31:30:0.400:2	0/1:9,8:31:17:0.471:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	36886469	rs2274293	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,51:31:118:0.432:2	0/1:42,32:30:74:0.432:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	36939688	rs3736919	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,26:31:26:1.00:2	0/1:0,26:31:26:1.00:2	./.	./.	0/1:1,37:30:38:0.974:2	0/1:17,22:31:39:0.564:2	./.	./.	0/1:51,32:32:83:0.386:2	0/1:0,42:32:42:1.00:2	0/1:24,30:31:54:0.556:2
chr13	36939758	rs3736920	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,66:32:66:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,4:33:4:1.00:2	./.	0/1:0,49:32:49:1.00:2	0/1:0,44:32:44:1.00:2	0/1:15,14:32:29:0.483:2	./.	0/1:48,40:33:88:0.455:2	0/1:0,48:32:48:1.00:2	0/1:0,76:32:76:1.00:2
chr13	37012866	rs78810484	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:87,11:19:98:0.112:2	./.	./.	0/1:118,32:12:151:0.213:2	0/1:115,35:13:150:0.233:2	0/1:122,42:11:165:0.256:2	0/1:131,38:12:169:0.225:2	0/1:137,35:13:172:0.203:2	0/1:122,30:11:152:0.197:2	0/1:75,23:16:98:0.235:2	0/1:78,22:15:100:0.220:2
chr13	37269675	rs9603083	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,11:30:29:0.379:2	./.	./.	./.	./.
chr13	37269835	rs603802	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,50:30:95:0.526:2	0/1:40,20:31:60:0.333:2	0/1:0,16:31:16:1.00:2	0/1:77,46:30:123:0.374:2	0/1:33,36:30:69:0.522:2	0/1:41,68:30:109:0.624:2	0/1:0,85:30:85:1.00:2	0/1:0,129:30:129:1.00:2	0/1:1,114:31:115:0.991:2	0/1:0,68:30:68:1.00:2	0/1:63,60:31:123:0.488:2
chr13	37269995	rs147950648	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,11:31:21:0.524:2	./.	./.	./.	./.	./.	./.	./.
chr13	37270174	rs11619028	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,28:30:49:0.571:2	0/1:26,20:30:46:0.435:2	./.	0/1:20,14:30:34:0.412:2	0/1:22,13:30:35:0.371:2	0/1:29,16:30:45:0.356:2	./.	./.	./.	./.	0/1:44,30:30:74:0.405:2
chr13	37270714	rs151065693	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,35:30:66:0.530:2	./.	./.	./.	./.	./.	./.	./.
chr13	37271163	rs9547646	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	0/1:11,8:27:19:0.421:2	./.	0/1:8,5:30:13:0.385:2	0/1:0,11:30:11:1.00:2	0/1:11,11:30:22:0.500:2	0/1:6,6:26:12:0.500:2	./.
chr13	37271895	rs73173342	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,64:32:120:0.533:2
chr13	37580139	rs1127446	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,46:31:46:1.00:2	0/1:30,43:30:73:0.589:2	0/1:30,29:31:59:0.492:2	0/1:34,23:30:57:0.404:2	0/1:28,18:32:46:0.391:2	0/1:33,24:31:57:0.421:2	0/1:45,36:30:81:0.444:2
chr13	37583812	rs9594185	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,121:34:195:0.621:2	./.	./.
chr13	37583831	rs9469	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,8:33:22:0.364:2	./.	0/1:0,193:31:193:1.00:2	./.	0/1:97,99:31:196:0.505:2	0/1:124,75:32:199:0.377:2	0/1:120,72:32:193:0.375:2	0/1:106,91:32:197:0.462:2	0/1:112,73:31:185:0.395:2
chr13	37625601	rs1543738	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:32:33:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,2:34:2:1.00:2	0/1:0,50:31:50:1.00:2	0/1:1,62:30:63:0.984:2	0/1:3,61:31:64:0.953:2	0/1:1,55:30:56:0.982:2	0/1:53,33:32:86:0.384:2	0/1:2,68:31:70:0.971:2	0/1:0,59:31:59:1.00:2	0/1:35,38:32:73:0.521:2
chr13	37679268	rs9576175	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	0/1:0,41:30:41:1.00:2	0/1:0,43:31:43:1.00:2	0/1:25,25:32:50:0.500:2	./.	0/1:0,39:32:39:1.00:2	./.	0/1:20,35:31:55:0.636:2
chr13	37679535	rs9576176	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,59:31:59:1.00:2	0/1:1,56:32:57:0.982:2	0/1:27,27:32:54:0.500:2	./.	0/1:0,67:33:67:1.00:2	./.	0/1:19,24:32:43:0.558:2
chr13	37679729	rs9576177	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,8:30:8:1.00:2	0/1:4,6:31:10:0.600:2	./.	./.	0/1:0,6:33:6:1.00:2	./.	0/1:7,3:26:10:0.300:2
chr13	37679776	rs9576178	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	0/1:0,5:29:5:1.00:2	0/1:5,8:30:13:0.615:2	./.	./.	./.	0/1:8,10:29:18:0.556:2
chr13	38138689	rs9547952	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,20:32:54:0.370:2	./.	./.	./.	./.	./.	./.	./.
chr13	38211313	rs75661457	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,38:32:80:0.475:2	./.	./.	./.	0/1:30,22:33:52:0.423:2	./.
chr13	38211679	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:33:148:0.027:2
chr13	38357384	rs12875527	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,38:32:84:0.452:2	./.	./.	./.	./.
chr13	38357471	rs3904512	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,6:30:25:0.240:2	./.	0/1:22,17:30:40:0.436:2	0/1:31,19:29:50:0.380:2	./.	0/1:19,23:31:42:0.548:2	0/1:0,59:30:59:1.00:2
chr13	38924083	rs2231330	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,163:32:163:1.00:2	0/1:0,74:32:75:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,179:32:179:1.00:2	0/1:1,182:32:183:0.995:2	0/1:0,180:32:180:1.00:2	0/1:111,77:32:188:0.410:2	0/1:102,89:32:191:0.466:2	0/1:0,184:33:184:1.00:2	0/1:0,182:32:182:1.00:2	0/1:0,177:32:177:1.00:2
chr13	38924263	rs2231332	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,63:32:63:1.00:2	0/1:1,44:31:46:0.978:2	0/1:0,56:31:56:1.00:2	0/1:43,26:33:69:0.377:2	0/1:39,36:32:75:0.480:2	0/1:1,49:33:50:0.980:2	0/1:1,55:30:56:0.982:2	0/1:0,89:32:89:1.00:2
chr13	38932206	rs201311871	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,11:31:21:0.524:2	./.
chr13	38932208	rs368202830	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:9,13:32:22:0.591:2	0/1:0,10:32:10:1.00:2	./.	./.	0/1:5,3:31:8:0.375:2	./.	0/1:15,18:31:33:0.545:2	./.	0/1:12,33:32:45:0.733:2	0/1:2,11:31:13:0.846:2	0/1:19,30:32:49:0.612:2
chr13	39261565	rs141718695	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:14,11:31:25:0.440:2	0/1:11,10:31:21:0.476:2	./.	./.	./.	./.	0/1:8,4:32:12:0.333:2	./.	./.	./.	./.
chr13	39262057	rs1868464	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:31:56:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,14:29:14:1.00:2	0/1:1,113:30:114:0.991:2	0/1:0,158:30:158:1.00:2	0/1:0,137:30:137:1.00:2	0/1:0,149:30:149:1.00:2	0/1:1,145:31:147:0.993:2	0/1:0,87:32:87:1.00:2	0/1:1,84:30:86:0.988:2	0/1:0,66:31:66:1.00:2
chr13	39262826	rs190063725	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,18:31:33:0.545:2	./.	./.	./.
chr13	39263023	rs12874397	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:32:10:0.500:2	0/1:37,24:31:61:0.393:2	./.	0/1:20,38:31:58:0.655:2	./.	0/1:32,51:31:83:0.614:2	./.	0/1:33,25:30:58:0.431:2	./.
chr13	39263646	rs58363253	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,27:32:67:0.403:2	./.	./.	./.	./.	./.
chr13	39263714	rs2496423	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:31:40:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,57:32:57:1.00:2	0/1:1,69:31:70:0.986:2	0/1:0,49:32:49:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,51:33:51:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,51:31:51:1.00:2
chr13	39263731	rs41292755	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,31:31:77:0.403:2	./.	./.	./.	0/1:27,29:32:56:0.518:2	./.	./.
chr13	39263789	rs7327915	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,25:31:45:0.556:2	./.	./.	./.	./.	./.
chr13	39264083	rs7329939	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,59:32:113:0.522:2	./.	./.	./.	./.	./.
chr13	39264690	rs2496425	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,21:32:38:0.553:2	0/1:20,16:32:36:0.444:2	0/1:25,25:32:50:0.500:2	./.	./.	0/1:26,24:34:50:0.480:2	0/1:15,28:34:43:0.651:2	0/1:25,27:34:52:0.519:2
chr13	39266298	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,40:29:104:0.385:2	./.
chr13	39266484	rs1868463	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,19:30:37:0.514:2	./.	./.	./.
chr13	39343721	rs145208009	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,40:33:83:0.482:2	./.	./.
chr13	39343822	rs9603422	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:53,54:31:107:0.505:2	0/1:38,23:31:61:0.377:2	./.	0/1:82,66:31:148:0.446:2	./.	./.	0/1:108,55:31:163:0.337:2	./.	./.	./.	./.
chr13	39343926	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,4:31:48:0.083:2	./.	./.	./.	./.	./.	./.
chr13	39358881	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:33:74:0.054:2	./.	./.	./.
chr13	39422624	rs9548505	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:39,40:33:79:0.506:2	0/1:28,5:33:33:0.152:2	./.	./.	./.	./.	./.	0/1:56,46:33:102:0.451:2	./.	./.	0/1:31,40:33:71:0.563:2
chr13	39424253	rs9548506	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:28,19:33:47:0.404:2	0/1:20,10:33:30:0.333:2	./.	./.	./.	./.	./.	0/1:49,35:33:84:0.417:2	./.	./.	0/1:45,37:32:83:0.451:2
chr13	39424254	rs9548507	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:28,19:30:47:0.404:2	0/1:20,10:29:30:0.333:2	./.	./.	./.	./.	./.	0/1:46,35:29:81:0.432:2	./.	./.	0/1:45,38:29:83:0.458:2
chr13	39430314	rs9548509	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:31:23:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,55:31:55:1.00:2	0/1:10,22:32:32:0.688:2	0/1:0,22:31:22:1.00:2	0/1:23,15:32:38:0.395:2	0/1:15,22:33:37:0.595:2	0/1:0,47:33:47:1.00:2
chr13	39433606	rs9532292	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,78:29:78:1.00:2	0/1:0,38:30:38:1.00:2	./.	./.	./.	0/1:67,52:30:119:0.437:2	0/1:59,66:31:125:0.528:2	0/1:75,76:30:151:0.503:2	./.	0/1:59,39:28:98:0.398:2	0/1:0,104:28:105:1.00:2
chr13	39448668	rs17058710	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,54:33:122:0.443:2
chr13	39448699	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,5:29:137:0.037:2
chr13	39450214	rs181564966	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:31:9:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.
chr13	39454771	rs41306664	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,36:30:65:0.554:2	./.
chr13	39454843	rs41306662	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,17:31:64:0.266:2	./.	./.	./.	./.
chr13	39586343	rs9576697	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,5:32:6:0.833:2	0/1:0,64:32:64:1.00:2	./.	0/1:1,57:31:58:0.983:2	./.	./.	0/1:46,31:33:78:0.403:2	0/1:37,22:33:59:0.373:2	0/1:36,32:32:68:0.471:2
chr13	39586979	rs41286143	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:28,26:29:54:0.481:2	0/1:12,12:30:24:0.500:2	./.	./.	0/1:20,14:29:34:0.412:2	./.	./.	./.	./.	./.	./.
chr13	39587166	rs11147745	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,13:32:21:0.619:2	0/1:0,91:33:91:1.00:2	./.	0/1:1,100:33:101:0.990:2	./.	./.	0/1:68,65:34:133:0.489:2	0/1:50,65:32:115:0.565:2	0/1:82,43:32:125:0.344:2
chr13	39587677	rs3751379	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,57:29:59:0.966:2	./.	0/1:1,62:28:63:0.984:2	./.	./.	0/1:34,21:30:55:0.382:2	0/1:39,22:27:61:0.361:2	0/1:34,37:29:72:0.521:2
chr13	39587763	rs35453341	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,61:29:124:0.492:2	./.	./.	./.	./.	./.	./.	./.
chr13	39587813	rs148669353	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,48:33:103:0.471:2	./.
chr13	39587865	rs3751378	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,81:28:83:0.976:2	./.	0/1:0,60:28:60:1.00:2	./.	./.	0/1:34,32:29:66:0.485:2	0/1:38,25:28:63:0.397:2	0/1:35,30:27:65:0.462:2
chr13	39587889	rs3751377	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,60:32:61:0.984:2	./.	0/1:0,52:32:52:1.00:2	./.	./.	0/1:34,35:33:69:0.507:2	0/1:24,16:32:40:0.400:2	0/1:28,28:32:56:0.500:2
chr13	39598616	rs61945763	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:47,50:32:97:0.515:2	0/1:31,18:32:49:0.367:2	./.	./.	0/1:47,34:31:81:0.420:2	./.	./.	./.	./.	./.	0/1:55,47:32:102:0.461:2
chr13	40175311	rs34616166	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,33:31:61:0.541:2	./.	./.	./.	./.	./.
chr13	40229797	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,14:30:29:0.483:2	./.	./.	./.	./.	./.	./.	./.
chr13	40229891	rs3812882	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:32:3:1.00:2	0/1:7,9:31:16:0.563:2	0/1:8,14:30:22:0.636:2	0/1:3,16:29:19:0.842:2	0/1:0,21:31:21:1.00:2	0/1:8,14:30:22:0.636:2	0/1:2,18:32:20:0.900:2	0/1:0,15:31:15:1.00:2	./.
chr13	40229957	rs3812883	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,5:32:7:0.714:2	0/1:25,31:30:56:0.554:2	0/1:19,24:31:43:0.558:2	0/1:22,40:32:62:0.645:2	0/1:0,37:32:37:1.00:2	0/1:30,23:32:53:0.434:2	0/1:1,60:33:61:0.984:2	0/1:0,53:30:53:1.00:2	./.
chr13	40261746	rs183001074	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,9:33:24:0.375:2	./.	./.	./.	./.
chr13	40263979	rs9548882	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,28:33:62:0.452:2	0/1:23,15:33:38:0.395:2	0/1:5,5:32:10:0.500:2	0/1:61,32:32:93:0.344:2	0/1:23,20:31:43:0.465:2	./.	./.	./.	./.	./.	./.
chr13	40298621	rs9315728	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,6:30:8:0.750:2	./.	./.	0/1:16,3:33:19:0.158:2	0/1:11,5:31:16:0.313:2	./.	./.	./.	./.	./.	./.
chr13	40298622	rs115395592	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,17:32:25:0.680:2	0/1:0,5:30:5:1.00:2	./.	0/1:21,7:33:28:0.250:2	0/1:16,7:31:23:0.304:2	./.	./.	./.	./.	./.	./.
chr13	40298623	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,7:32:37:0.189:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	40298639	rs78336861	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,9:30:31:0.290:2	0/1:20,6:30:26:0.231:2	0/1:24,5:25:29:0.172:2	0/1:1,13:31:14:0.929:2	0/1:15,8:31:23:0.348:2	./.	./.	./.
chr13	40301659	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,5:28:157:0.032:2
chr13	41134254	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:32:125:0.032:2	./.	./.	./.
chr13	41134707	rs45624735	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,57:30:136:0.419:2	./.	./.	./.	./.	./.	./.	./.
chr13	41302007	rs181368210	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,38:32:83:0.458:2	./.	./.	./.	./.	./.
chr13	41323324	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,5:33:90:0.056:2	./.	./.	./.
chr13	41323341	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,5:31:93:0.054:2	./.	./.	./.
chr13	41323365	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,5:32:102:0.049:2	./.	./.	./.
chr13	41323397	rs13508	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,26:31:82:0.317:2	./.	./.	./.	0/1:40,30:31:70:0.429:2	./.	0/1:39,33:32:72:0.458:2	./.
chr13	41331027	rs1854421	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,14:33:41:0.341:2	./.	./.	./.
chr13	41373254	rs55943532	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:60,46:32:107:0.434:2	0/1:40,21:31:61:0.344:2	./.	0/1:60,72:31:132:0.545:2	./.	0/1:96,69:31:165:0.418:2	./.	0/1:103,88:32:191:0.461:2	./.	0/1:61,57:32:118:0.483:2	./.
chr13	41379272	rs9577152	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:26,22:33:48:0.458:2	0/1:7,16:32:23:0.696:2	./.	0/1:28,37:32:65:0.569:2	./.	0/1:49,43:32:92:0.467:2	./.	0/1:33,49:33:82:0.598:2	./.	0/1:40,36:32:76:0.474:2	./.
chr13	41382711	rs17849654	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:34:7:0.571:2	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	0/1:0,9:33:9:1.00:2	./.	0/1:2,8:32:10:0.800:2
chr13	41515118	rs34905611	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,36:31:80:0.450:2	./.	./.	./.	0/1:40,54:32:94:0.574:2	./.	./.
chr13	41515221	rs151034333	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,38:30:74:0.514:2	./.	./.	./.	./.	./.	./.	./.
chr13	41515286	rs1056820	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,64:31:64:1.00:2	0/1:0,30:32:30:1.00:2	./.	0/1:49,38:32:87:0.437:2	0/1:0,44:31:44:1.00:2	./.	0/1:18,29:31:47:0.617:2	0/1:0,57:31:57:1.00:2	0/1:1,58:33:59:0.983:2	0/1:0,45:31:45:1.00:2	0/1:48,45:32:93:0.484:2
chr13	41515337	.	T	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:64,12:17:76:0.158:2	./.	./.	0/1:80,13:13:93:0.140:2	0/1:58,13:12:71:0.183:2	0/1:63,14:12:77:0.182:2	0/1:52,9:15:61:0.148:2	./.	./.	./.	0/1:100,14:22:114:0.123:2
chr13	41515371	rs7987185	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:30:9:0.556:2	./.	./.	0/1:32,28:30:60:0.467:2	0/1:25,21:28:46:0.457:2	./.	./.	./.	./.
chr13	41517985	rs3764056	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,133:30:133:1.00:2	0/1:0,64:28:64:1.00:2	0/1:4,10:30:14:0.714:2	0/1:90,94:30:184:0.511:2	0/1:0,84:29:84:1.00:2	./.	0/1:72,45:30:117:0.385:2	0/1:3,165:29:168:0.982:2	0/1:1,174:30:175:0.994:2	0/1:0,136:30:137:1.00:2	0/1:101,89:30:190:0.468:2
chr13	41533052	rs7799	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:33:88:1.00:2	0/1:1,56:32:57:0.982:2	0/1:9,5:33:14:0.357:2	0/1:66,68:33:134:0.507:2	0/1:1,150:32:151:0.993:2	./.	0/1:78,79:32:157:0.503:2	0/1:0,148:33:148:1.00:2	0/1:3,157:33:160:0.981:2	0/1:0,110:32:110:1.00:2	0/1:74,62:33:136:0.456:2
chr13	41705130	rs61732683	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,8:32:9:0.889:2	./.	./.	./.	./.	./.	./.	./.	./.
chr13	41705495	rs584594	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:32:75:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,78:33:78:1.00:2	0/1:0,77:33:77:1.00:2	0/1:0,93:33:93:1.00:2	0/1:0,105:33:105:1.00:2	0/1:0,82:33:82:1.00:2	0/1:0,76:34:76:1.00:2	0/1:0,80:33:80:1.00:2	0/1:44,48:34:92:0.522:2
chr13	41705572	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,7:30:76:0.092:2	./.	./.	0/1:99,5:32:104:0.048:2	./.	./.	0/1:73,5:30:78:0.064:2	./.
chr13	41706800	rs9566703	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:32:36:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,56:33:56:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,44:34:45:1.00:2	0/1:0,33:32:33:1.00:2	0/1:31,18:33:50:0.367:2
chr13	41767338	rs2039134	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,69:32:71:0.972:2	0/1:0,46:31:46:1.00:2	0/1:0,7:32:7:1.00:2	0/1:2,81:32:83:0.976:2	0/1:0,60:31:60:1.00:2	0/1:75,42:31:117:0.359:2	0/1:60,40:31:100:0.400:2	0/1:82,41:32:123:0.333:2	0/1:0,87:32:87:1.00:2	0/1:3,66:32:69:0.957:2	0/1:82,40:32:122:0.328:2
chr13	41767341	rs2039135	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,69:31:71:0.972:2	0/1:1,45:31:46:0.978:2	0/1:0,7:32:7:1.00:2	0/1:3,81:31:84:0.964:2	0/1:1,59:31:60:0.983:2	0/1:76,42:31:118:0.356:2	0/1:55,40:31:95:0.421:2	0/1:82,41:32:123:0.333:2	0/1:0,85:31:86:1.00:2	0/1:3,65:31:68:0.956:2	0/1:81,39:31:120:0.325:2
chr13	41767872	rs139744157	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,65:32:148:0.439:2
chr13	41768220	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,6:32:56:0.107:2	./.	./.	./.	./.	./.	./.
chr13	41768611	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,4:31:34:0.118:2	./.
chr13	41768690	rs9525462	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,6:28:6:1.00:2	0/1:0,2:31:2:1.00:2	./.	0/1:0,3:30:3:1.00:2	0/1:0,6:30:6:1.00:2	0/1:4,5:32:9:0.556:2	0/1:0,4:29:4:1.00:2	./.	0/1:0,3:33:3:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,2:32:2:1.00:2
chr13	41834744	rs2297555	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,187:33:188:0.995:2	0/1:2,108:33:110:0.982:2	0/1:34,6:32:40:0.150:2	./.	0/1:2,154:32:156:0.987:2	0/1:111,89:32:200:0.445:2	0/1:124,73:32:197:0.371:2	0/1:104,92:32:196:0.469:2	0/1:1,194:33:195:0.995:2	0/1:0,186:32:186:1.00:2	0/1:91,102:33:193:0.528:2
chr13	41899938	rs116069877	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,99:34:175:0.566:2
chr13	41902939	rs3812896	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:33:45:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,38:33:38:1.00:2	0/1:19,23:32:42:0.548:2	0/1:1,28:33:29:0.966:2	0/1:30,21:33:51:0.412:2	0/1:0,45:33:45:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,60:33:60:1.00:2
chr13	42032572	rs7136	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,11:31:15:0.733:2	./.	./.	0/1:23,12:30:35:0.343:2	0/1:0,7:27:7:1.00:2	0/1:17,8:28:25:0.320:2	0/1:0,10:30:10:1.00:2	0/1:9,3:29:12:0.250:2	0/1:10,3:30:13:0.231:2	./.	0/1:14,6:27:20:0.300:2
chr13	42189142	rs73464952	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,34:31:74:0.459:2	./.	0/1:27,18:31:45:0.400:2	./.	./.	./.	./.	./.
chr13	42245220	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,3:32:49:0.061:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	42245247	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,3:33:49:0.063:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	42259195	rs78161810	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr13	42264380	rs2274810	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,14:30:40:0.350:2	./.	./.	0/1:17,30:31:47:0.638:2	./.	./.	./.
chr13	42273398	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:33:93:0.043:2	./.	./.	./.
chr13	42301395	rs41288291	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:32:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr13	42385446	rs9562353	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,22:30:54:0.407:2	./.	./.	0/1:34,28:28:62:0.452:2	0/1:42,29:31:71:0.408:2	./.	0/1:35,25:30:60:0.417:2
chr13	42404710	rs41288297	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,16:33:39:0.410:2	0/1:25,7:32:32:0.219:2	0/1:23,21:31:44:0.477:2	./.	./.	./.	0/1:22,16:33:38:0.421:2	./.
chr13	42434097	rs11618465	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:18,13:29:31:0.419:2	0/1:18,9:29:27:0.333:2	./.	./.	./.	./.	./.	./.	./.	0/1:24,17:30:41:0.415:2	./.
chr13	42442546	rs3742262	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.	./.	0/1:57,43:30:100:0.430:2	0/1:48,44:30:92:0.478:2	./.	./.	./.	0/1:77,51:30:128:0.398:2
chr13	42460099	rs189844979	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,38:32:62:0.613:2	./.	./.	./.	./.	./.	./.	./.
chr13	42465713	rs9562362	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,21:31:51:0.412:2	0/1:36,21:32:57:0.368:2	./.	./.	./.	0/1:29,33:33:62:0.532:2
chr13	42703682	rs3742261	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:32:8:0.625:2	./.	0/1:31,24:31:55:0.436:2	0/1:55,38:32:93:0.409:2	./.	0/1:53,28:32:81:0.346:2	./.	0/1:0,78:34:78:1.00:2	0/1:61,73:34:134:0.545:2
chr13	42729441	rs3208827	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,86:31:191:0.450:2	./.	0/1:54,59:31:113:0.522:2	./.
chr13	42764564	rs7324235	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,26:29:41:0.634:2	./.	./.	0/1:28,38:30:66:0.576:2	./.	0/1:0,37:30:37:1.00:2	0/1:35,38:30:73:0.521:2
chr13	42772717	rs9533031	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,88:32:89:0.989:2	0/1:2,47:31:49:0.959:2	0/1:8,5:32:13:0.385:2	0/1:1,68:32:69:0.986:2	0/1:47,33:31:80:0.413:2	0/1:0,90:31:90:1.00:2	0/1:35,33:32:68:0.485:2	./.	0/1:0,80:33:80:1.00:2	./.	0/1:48,36:31:84:0.429:2
chr13	42793479	rs180870	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,68:33:70:0.971:2	0/1:2,29:33:31:0.935:2	0/1:0,11:32:11:1.00:2	0/1:0,71:33:71:1.00:2	0/1:44,24:32:68:0.353:2	0/1:1,85:32:86:0.988:2	0/1:22,9:33:31:0.290:2	./.	0/1:0,84:33:84:1.00:2	./.	0/1:89,42:33:131:0.321:2
chr13	42803263	rs17646069	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:28:8:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr13	42872719	rs2273952	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,42:29:103:0.408:2	./.	0/1:86,56:30:142:0.394:2	./.	./.
chr13	42872779	rs2273951	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,54:30:175:0.309:2	./.	0/1:87,63:30:150:0.420:2	./.	./.
chr13	42876290	rs41288311	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,24:32:55:0.436:2	0/1:31,21:31:52:0.404:2	./.	./.	./.	./.	./.	./.	0/1:33,34:32:67:0.507:2	0/1:34,25:31:59:0.424:2	0/1:42,25:32:67:0.373:2
chr13	42877265	rs9315906	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,21:30:46:0.457:2	./.	0/1:38,27:32:65:0.415:2	./.	./.
chr13	42882620	rs17521586	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,14:33:31:0.452:2	./.	0/1:18,16:33:34:0.471:2	./.	./.
chr13	43148565	rs2296533	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,3:34:3:1.00:2	0/1:0,4:33:4:1.00:2	0/1:1,4:31:5:0.800:2	./.	./.	0/1:4,3:33:7:0.429:2	0/1:2,3:33:5:0.600:2	./.	./.	0/1:0,4:33:4:1.00:2	./.
chr13	43180660	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:32:133:0.030:2	./.
chr13	43181024	rs9562415	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,26:30:55:0.473:2	./.
chr13	43462422	rs1044856	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,86:31:150:0.573:2	./.	0/1:73,77:31:150:0.513:2	0/1:60,42:31:102:0.412:2	0/1:0,156:31:156:1.00:2	./.	./.	./.
chr13	43462607	rs11557739	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,31:30:66:0.470:2	./.	./.
chr13	43469157	rs1128105	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,8:33:24:0.333:2	0/1:7,4:33:11:0.364:2	./.	0/1:15,8:31:23:0.348:2	0/1:0,13:32:13:1.00:2	./.	./.	./.	./.	0/1:18,11:32:29:0.379:2	0/1:0,37:32:37:1.00:2
chr13	43469211	rs1359184	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,20:31:37:0.541:2	0/1:6,5:32:11:0.455:2	./.	0/1:25,7:30:32:0.219:2	0/1:0,13:29:13:1.00:2	./.	./.	./.	./.	0/1:20,8:31:28:0.286:2	0/1:0,47:29:47:1.00:2
chr13	43597865	rs12015	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,23:31:61:0.377:2	./.	./.	0/1:32,14:32:46:0.304:2	./.	0/1:26,16:32:42:0.381:2	0/1:9,22:33:31:0.710:2	./.
chr13	43639845	rs3783044	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,15:30:38:0.395:2
chr13	43788158	rs703207	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,75:31:148:0.507:2	0/1:36,27:31:63:0.429:2	0/1:0,15:31:15:1.00:2	0/1:1,115:31:117:0.991:2	0/1:0,89:30:89:1.00:2	0/1:62,61:30:123:0.496:2	0/1:0,87:31:87:1.00:2	0/1:1,154:31:155:0.994:2	0/1:2,141:32:143:0.986:2	0/1:66,56:30:122:0.459:2	0/1:0,150:31:150:1.00:2
chr13	43872647	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:32:89:0.045:2
chr13	44411421	rs79782223	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,66:31:161:0.410:2	./.	./.	./.	./.	./.	./.	./.
chr13	44411563	rs7332503	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,40:32:90:0.444:2	./.	./.	./.	./.	./.
chr13	44443506	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:33:137:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	44455233	rs34414396	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,49:30:105:0.467:2	./.
chr13	44457925	rs3764147	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:33,27:29:60:0.450:2	0/1:23,21:28:44:0.477:2	./.	0/1:33,47:29:80:0.588:2	./.	0/1:38,45:29:83:0.542:2	0/1:33,21:27:54:0.389:2	./.	0/1:52,45:29:97:0.464:2	./.	./.
chr13	44457984	rs9533673	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,46:33:85:0.541:2	0/1:55,57:33:112:0.509:2	./.	./.	./.
chr13	45148093	rs142800671	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,18:29:38:0.474:2	./.	./.	./.
chr13	45148257	rs9525983	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,68:29:138:0.496:2	./.	./.	./.	./.	./.	0/1:58,58:30:117:0.500:2	0/1:88,99:31:187:0.529:2
chr13	45148516	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,13:13:108:0.121:2	./.	./.	./.	./.	0/1:114,17:16:131:0.130:2	./.	0/1:100,10:16:110:0.091:2
chr13	45149662	rs9525984	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,46:31:110:0.418:2	./.	./.	./.	./.	./.	0/1:45,42:31:87:0.483:2	0/1:72,53:32:125:0.424:2
chr13	45149695	rs138186764	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,39:32:97:0.402:2	./.	./.	./.
chr13	45149698	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,39:31:72:0.542:2	./.	./.	./.	./.	./.	./.	./.
chr13	45515395	rs17066360	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:32:153:0.026:2	./.	./.	./.	./.
chr13	45517593	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,6:31:195:0.031:2	./.
chr13	45517747	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,5:27:67:0.075:2	./.	./.	./.	./.	./.	0/1:103,4:33:107:0.037:2
chr13	45523879	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:119,9:31:128:0.070:2	0/1:85,9:30:94:0.096:2	./.	0/1:174,7:31:181:0.039:2	0/1:177,12:30:189:0.063:2	0/1:190,7:30:197:0.036:2	0/1:182,15:31:197:0.076:2	0/1:188,10:31:198:0.051:2	0/1:187,8:31:195:0.041:2	0/1:172,12:31:184:0.065:2	0/1:191,5:31:196:0.026:2
chr13	45563425	rs114437324	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,3:31:25:0.120:2	./.	./.	./.	./.	./.	./.
chr13	45563446	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,3:31:35:0.086:2	./.	./.	./.	./.	./.	./.
chr13	45563464	rs1140993	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:30:34:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,8:33:8:1.00:2	0/1:30,29:31:59:0.492:2	0/1:3,47:30:50:0.940:2	0/1:0,50:30:50:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,51:30:51:1.00:2	0/1:1,32:32:33:0.970:2	0/1:0,36:30:36:1.00:2	0/1:1,33:31:34:0.971:2
chr13	45768759	rs9534059	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,33:30:89:0.371:2	./.	./.	0/1:54,40:33:94:0.426:2	0/1:61,25:29:86:0.291:2	./.
chr13	45841502	rs7331090	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,26:31:55:0.473:2	./.	./.	0/1:0,91:33:91:1.00:2	0/1:36,21:32:57:0.368:2	./.
chr13	45964859	rs17066656	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:32:197:0.020:2	0/1:187,5:31:192:0.026:2	./.	./.	./.
chr13	45964919	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,5:29:173:0.029:2	./.	./.	./.
chr13	46039306	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:28:64:0.063:2	./.
chr13	46067593	rs2985959	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:33:11:0.455:2	./.	0/1:43,38:32:81:0.469:2	0/1:53,31:32:84:0.369:2	0/1:46,37:32:83:0.446:2	0/1:67,47:32:114:0.412:2	./.	./.	0/1:0,104:33:104:1.00:2
chr13	46077381	rs3014960	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:32:70:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,47:31:48:1.00:2	0/1:0,76:31:76:1.00:2	0/1:0,47:31:47:1.00:2	0/1:70,34:31:104:0.327:2	0/1:0,87:32:87:1.00:2	0/1:50,36:32:86:0.419:2	0/1:0,103:31:103:1.00:2
chr13	46103935	rs2274285	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:33:68:1.00:2	0/1:0,36:32:36:1.00:2	0/1:2,6:32:8:0.750:2	0/1:0,54:33:54:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,65:32:66:1.00:2	0/1:2,40:33:42:0.952:2	0/1:34,36:32:70:0.514:2	0/1:41,39:32:80:0.488:2	0/1:24,27:32:51:0.529:2	0/1:0,83:33:83:1.00:2
chr13	46108853	rs3014902	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,78:32:78:1.00:2	0/1:0,44:33:44:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,90:33:90:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,79:33:79:1.00:2
chr13	46108854	rs2985989	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,78:33:78:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,45:32:45:1.00:2	0/1:1,83:32:84:0.988:2	0/1:0,58:32:58:1.00:2	0/1:38,30:33:68:0.441:2	0/1:46,35:34:81:0.432:2	0/1:31,33:33:64:0.516:2	0/1:0,80:33:80:1.00:2
chr13	46115693	rs41292933	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,27:30:64:0.422:2	./.	./.	./.	./.	./.	0/1:85,84:31:169:0.497:2
chr13	46115731	rs1536207	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,7:31:17:0.412:2	./.	0/1:28,25:31:53:0.472:2	0/1:45,45:31:90:0.500:2	./.	0/1:42,60:30:102:0.588:2	./.	./.	0/1:2,137:30:139:0.986:2
chr13	46154749	rs11618506	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,11:30:31:0.355:2	./.	./.	./.	./.
chr13	46164816	rs369115067	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,20:31:43:0.465:2	./.	./.	./.
chr13	46170609	rs3014939	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:0,44:31:44:1.00:2	./.	0/1:59,27:32:86:0.314:2	0/1:4,19:31:23:0.826:2	0/1:28,20:31:48:0.417:2	0/1:21,12:32:33:0.364:2	0/1:42,24:31:66:0.364:2	0/1:33,32:33:65:0.492:2	0/1:39,17:32:56:0.304:2	0/1:39,42:31:81:0.519:2
chr13	46170621	rs17066954	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,22:31:33:0.667:2	./.	./.	./.	./.
chr13	46170726	rs11272726	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,3:33:34:0.091:2	./.
chr13	46170735	rs28460344	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,3:32:27:0.111:2	0/1:28,5:28:33:0.152:2	./.
chr13	46170737	rs117004691	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,3:32:27:0.111:2	0/1:29,6:31:35:0.171:2	./.
chr13	46276608	rs41284144	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,55:30:107:0.514:2	./.	./.	./.	./.
chr13	46287373	rs80072371	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,4:33:12:0.333:2
chr13	46287517	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:29:92:0.043:2	./.
chr13	46288145	rs7317245	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:34:4:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr13	46357750	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:31:138:0.029:2	./.
chr13	46541673	rs9534264	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:69,58:31:127:0.457:2	0/1:40,21:30:61:0.344:2	./.	0/1:54,53:30:107:0.495:2	0/1:44,47:30:91:0.516:2	0/1:0,103:30:103:1.00:2	0/1:47,38:31:85:0.447:2	0/1:0,79:30:79:1.00:2	0/1:0,85:31:85:1.00:2	0/1:60,45:30:105:0.429:2	./.
chr13	46543129	rs374265061	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,55:33:131:0.420:2	./.	./.
chr13	46562935	rs1134071	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:56,55:27:111:0.495:2	0/1:26,38:28:64:0.594:2	./.	0/1:70,46:28:116:0.397:2	0/1:60,68:28:128:0.531:2	0/1:0,121:28:122:1.00:2	0/1:75,77:28:152:0.507:2	0/1:1,161:28:162:0.994:2	0/1:0,120:28:120:1.00:2	0/1:40,55:28:95:0.579:2	./.
chr13	46629944	rs1926447	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,19:32:43:0.442:2	0/1:14,13:32:27:0.481:2	0/1:0,2:32:2:1.00:2	0/1:22,27:33:49:0.551:2	0/1:18,13:33:31:0.419:2	0/1:0,43:32:43:1.00:2	0/1:20,6:32:26:0.231:2	0/1:0,43:33:43:1.00:2	0/1:0,55:33:55:1.00:2	0/1:24,11:32:35:0.314:2	./.
chr13	46629978	rs184648402	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,11:30:26:0.423:2	./.	./.	./.	./.	./.
chr13	46641466	rs9316179	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,82:29:82:1.00:2	0/1:62,47:30:109:0.431:2	0/1:103,75:29:178:0.421:2	./.	0/1:69,57:30:126:0.452:2	./.
chr13	46641481	rs7337140	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,58:28:115:0.504:2	0/1:37,37:29:74:0.500:2	0/1:12,11:29:23:0.478:2	0/1:76,77:29:153:0.503:2	0/1:51,41:28:92:0.446:2	0/1:0,82:29:82:1.00:2	0/1:54,37:30:91:0.407:2	0/1:93,79:29:172:0.459:2	0/1:2,155:30:157:0.987:2	0/1:56,53:28:109:0.486:2	0/1:1,146:28:147:0.993:2
chr13	46648094	rs3742264	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,23:32:24:0.958:2	0/1:6,17:32:23:0.739:2	0/1:14,11:31:25:0.440:2	./.	0/1:11,9:30:20:0.450:2	./.
chr13	46656669	rs2296642	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,30:30:60:0.500:2	0/1:13,14:29:27:0.519:2	./.	0/1:36,34:30:70:0.486:2	0/1:44,37:29:81:0.457:2	0/1:0,58:29:58:1.00:2	0/1:52,28:30:80:0.350:2	0/1:45,48:30:93:0.516:2	0/1:0,79:30:79:1.00:2	0/1:31,21:31:52:0.404:2	0/1:0,58:30:58:1.00:2
chr13	46705068	rs11558762	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,66:32:143:0.462:2	./.	0/1:69,63:33:132:0.477:2	0/1:73,55:33:128:0.430:2	./.
chr13	46708291	rs4941543	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,129:33:129:1.00:2	0/1:0,85:33:85:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,144:32:144:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,156:32:156:1.00:2	0/1:73,86:33:159:0.541:2	0/1:0,176:32:176:1.00:2	0/1:87,79:34:166:0.476:2	0/1:94,66:33:160:0.413:2	0/1:0,178:33:179:1.00:2
chr13	46728943	rs147167030	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,89:33:185:0.481:2	./.	./.	./.
chr13	46801970	rs7338697	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,16:32:36:0.444:2	0/1:5,6:31:11:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	46802177	rs6561303	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,38:33:77:0.494:2	0/1:23,24:32:47:0.511:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	46917469	rs2478046	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,34:32:94:0.362:2	0/1:45,62:32:108:0.579:2	0/1:55,47:33:102:0.461:2	./.	./.	./.	./.
chr13	46923401	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:32:54:0.074:2	./.
chr13	46946157	rs1408184	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,94:32:94:1.00:2	0/1:0,59:32:59:1.00:2	./.	0/1:58,56:31:114:0.491:2	0/1:72,45:31:117:0.385:2	0/1:64,77:31:141:0.546:2	0/1:60,54:31:114:0.474:2	0/1:141,4:32:145:0.028:2	./.	./.	./.
chr13	47127813	rs45540131	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,43:31:55:0.782:2	./.	./.
chr13	47243196	rs41284185	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,96:30:159:0.604:2	./.	./.	./.	./.	./.	./.	./.
chr13	47260054	rs842381	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:33:28:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,3:34:3:1.00:2	0/1:0,19:33:19:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,35:34:35:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,40:33:40:1.00:2
chr13	47273458	rs706621	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:33:50:1.00:2	0/1:0,23:33:23:1.00:2	0/1:2,6:33:8:0.750:2	0/1:0,72:33:73:1.00:2	0/1:47,32:32:79:0.405:2	0/1:0,65:32:65:1.00:2	0/1:50,29:33:79:0.367:2	0/1:0,69:33:69:1.00:2	0/1:58,39:34:97:0.402:2	0/1:26,26:34:52:0.500:2	0/1:0,62:33:62:1.00:2
chr13	47279454	rs842387	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,40:33:40:1.00:2	0/1:0,29:33:29:1.00:2	./.	0/1:0,41:32:41:1.00:2	0/1:43,28:31:71:0.394:2	0/1:0,45:31:45:1.00:2	0/1:26,17:29:43:0.395:2	0/1:1,59:31:60:0.983:2	0/1:17,13:33:30:0.433:2	0/1:21,20:32:41:0.488:2	0/1:0,57:32:57:1.00:2
chr13	47308109	rs2298086	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,154:30:154:1.00:2	0/1:0,84:29:84:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,168:30:168:1.00:2	0/1:0,78:29:79:1.00:2	0/1:0,134:29:134:1.00:2	0/1:0,123:30:123:1.00:2	0/1:0,180:29:181:1.00:2	0/1:1,162:30:163:0.994:2	0/1:0,133:30:133:1.00:2	0/1:0,135:30:135:1.00:2
chr13	47315984	rs3742274	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,107:29:107:1.00:2	0/1:0,57:28:57:1.00:2	0/1:0,24:28:24:1.00:2	0/1:0,134:28:134:1.00:2	0/1:0,150:29:151:1.00:2	0/1:0,136:28:136:1.00:2	0/1:0,128:28:128:1.00:2	0/1:0,129:28:129:1.00:2	0/1:0,130:29:130:1.00:2	0/1:0,98:28:98:1.00:2	0/1:0,120:28:120:1.00:2
chr13	47345630	rs15303	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,43:31:81:0.531:2	0/1:40,57:32:97:0.588:2	./.	./.
chr13	47354101	rs9778	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:17,10:29:27:0.370:2	0/1:8,3:33:11:0.273:2	0/1:0,3:31:3:1.00:2	./.	./.	./.	0/1:10,14:31:24:0.583:2	./.	./.	0/1:7,17:33:24:0.708:2	0/1:19,16:32:35:0.457:2
chr13	47358446	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr13	47409034	rs6314	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,103:30:196:0.526:2	./.	./.	./.	./.	./.
chr13	47466622	rs6305	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,78:31:154:0.506:2	./.	./.	./.	./.
chr13	47469940	rs6313	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,15:32:43:0.349:2	0/1:12,8:33:20:0.400:2	./.	0/1:10,19:32:29:0.655:2	0/1:12,17:33:29:0.586:2	./.	0/1:0,42:32:42:1.00:2	0/1:1,33:32:34:0.971:2	0/1:24,16:34:40:0.400:2	0/1:0,32:33:33:1.00:2	./.
chr13	47469968	rs1805055	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,28:32:49:0.571:2	0/1:6,9:32:15:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	48517492	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:193,5:28:198:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr13	48542757	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:81,4:33:85:0.047:2	./.	./.	0/1:65,4:32:69:0.058:2	./.	./.	./.	./.	./.	./.	./.
chr13	48547467	rs7320366	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:31:52:1.00:2	0/1:0,40:31:40:1.00:2	0/1:3,4:30:7:0.571:2	0/1:28,29:30:57:0.509:2	0/1:0,34:32:34:1.00:2	0/1:26,25:31:51:0.490:2	0/1:0,46:32:46:1.00:2	0/1:45,28:32:73:0.384:2	0/1:0,51:33:51:1.00:2	0/1:2,62:32:64:0.969:2	0/1:32,35:32:67:0.522:2
chr13	48986113	rs199857507	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,6:24:21:0.286:2	./.
chr13	48987032	rs2227311	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,8:32:16:0.500:2	./.
chr13	49051481	rs3092904	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:55,55:31:110:0.500:2	0/1:48,24:31:72:0.333:2	./.	0/1:47,39:31:86:0.453:2	./.	0/1:51,46:30:97:0.474:2	./.	0/1:48,42:30:90:0.467:2	./.	./.	./.
chr13	49085908	rs7334590	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,14:28:23:0.609:2	0/1:7,5:26:12:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	49086264	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,29:32:82:0.354:2	./.	./.
chr13	49281660	rs61735175	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,12:32:30:0.400:2	0/1:15,7:32:22:0.318:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	49282183	rs201965961	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,25:32:46:0.543:2	./.
chr13	49283031	rs34494076	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,59:32:105:0.562:2	0/1:49,36:32:85:0.424:2	0/1:12,14:32:26:0.538:2	0/1:85,76:32:161:0.472:2	0/1:101,65:31:166:0.392:2	./.	./.	0/1:100,90:32:190:0.474:2	./.	./.	./.
chr13	49283284	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,4:31:18:0.222:2	./.	./.	./.	./.	./.	./.	./.
chr13	49283482	rs74809557	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,37:31:66:0.561:2	0/1:32,16:31:48:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	49283487	rs912278	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,25:30:58:0.431:2	0/1:15,28:30:43:0.651:2	0/1:0,5:30:5:1.00:2	0/1:47,28:29:75:0.373:2	0/1:0,33:30:33:1.00:2	0/1:36,38:30:74:0.514:2	0/1:18,19:30:37:0.514:2	0/1:47,23:30:70:0.329:2	./.	0/1:1,48:30:49:0.980:2	0/1:33,40:29:73:0.548:2
chr13	49649417	rs111263636	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,86:33:183:0.470:2
chr13	49719998	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,6:31:155:0.039:2	./.
chr13	49775997	rs45604939	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,51:33:114:0.447:2	./.	./.	./.
chr13	49776080	rs9316430	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,29:32:53:0.547:2	0/1:15,14:31:29:0.483:2	./.	./.	./.	./.	./.	./.
chr13	49794650	rs9568169	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,60:32:93:0.645:2	0/1:0,58:32:58:1.00:2	0/1:35,40:31:75:0.533:2	0/1:32,42:31:74:0.568:2	./.	0/1:0,36:31:36:1.00:2	0/1:10,11:32:21:0.524:2
chr13	49840024	rs6561512	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:32:30:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,75:33:75:1.00:2	0/1:0,54:33:54:1.00:2	0/1:0,85:33:85:1.00:2
chr13	49841751	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:33:38:0.079:2	./.	./.	./.	./.
chr13	49913894	rs200103668	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,22:32:62:0.355:2	./.	./.	./.	./.	./.
chr13	49951142	rs8002829	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,62:32:63:1.00:2	0/1:0,24:32:24:1.00:2	./.	0/1:58,47:32:105:0.448:2	0/1:69,33:32:102:0.324:2	0/1:43,34:32:77:0.442:2	0/1:58,26:32:84:0.310:2	0/1:76,45:32:121:0.372:2	0/1:63,33:32:96:0.344:2	0/1:59,37:33:96:0.385:2	0/1:0,99:32:99:1.00:2
chr13	49951193	rs8002858	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,99:30:99:1.00:2	0/1:2,37:29:39:0.949:2	0/1:14,3:30:17:0.176:2	0/1:84,63:30:147:0.429:2	0/1:93,40:30:133:0.301:2	0/1:85,49:30:134:0.366:2	0/1:87,37:30:124:0.298:2	0/1:106,73:30:179:0.408:2	0/1:98,39:31:137:0.285:2	0/1:79,32:29:111:0.288:2	0/1:0,130:30:130:1.00:2
chr13	50038209	rs67216195	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,7:31:39:0.179:2	0/1:10,10:32:20:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	50050620	rs7998427	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,11:32:21:0.524:2	0/1:10,13:33:23:0.565:2	0/1:0,2:32:2:1.00:2	0/1:10,12:33:22:0.545:2	0/1:10,4:33:14:0.286:2	0/1:7,8:32:15:0.533:2	0/1:7,6:32:13:0.462:2	0/1:12,9:33:21:0.429:2	0/1:6,3:33:9:0.333:2	0/1:0,17:32:17:1.00:2	./.
chr13	50057097	rs2057413	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:32:96:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,16:30:16:1.00:2	0/1:47,40:31:87:0.460:2	0/1:28,33:30:61:0.541:2	0/1:50,33:29:83:0.398:2	0/1:45,32:31:77:0.416:2	0/1:48,52:31:100:0.520:2	0/1:66,35:31:101:0.347:2	0/1:0,61:31:61:1.00:2	./.
chr13	50057633	rs11619265	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,28:32:71:0.394:2	0/1:26,14:33:40:0.350:2	0/1:2,11:33:13:0.846:2	0/1:58,62:33:120:0.517:2	0/1:41,32:33:73:0.438:2	0/1:57,64:32:121:0.529:2	./.	0/1:50,52:33:102:0.510:2	./.	0/1:0,123:33:123:1.00:2	./.
chr13	50062650	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:32:121:0.033:2	./.	./.
chr13	50080847	rs2031532	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,31:32:31:1.00:2	0/1:0,26:32:26:1.00:2	./.	0/1:32,25:32:57:0.439:2	0/1:20,11:33:31:0.355:2	0/1:21,17:32:38:0.447:2	./.	0/1:23,35:32:58:0.603:2	0/1:31,26:32:57:0.456:2	0/1:0,42:32:42:1.00:2	./.
chr13	50123622	rs3751384	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,25:30:60:0.417:2	0/1:13,16:30:29:0.552:2	0/1:0,5:30:5:1.00:2	0/1:55,28:30:83:0.337:2	0/1:2,73:30:75:0.973:2	0/1:0,78:31:78:1.00:2	0/1:44,39:30:83:0.470:2	0/1:54,42:30:96:0.438:2	./.	0/1:0,52:30:52:1.00:2	0/1:30,23:30:53:0.434:2
chr13	50123649	rs3751383	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:31,36:31:67:0.537:2	0/1:25,14:29:39:0.359:2	./.	./.	./.	./.	./.	0/1:124,4:31:128:0.031:2	./.	./.	./.
chr13	50123688	rs3751382	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:32,36:32:68:0.529:2	0/1:17,20:32:37:0.541:2	./.	./.	./.	./.	./.	0/1:123,4:33:127:0.031:2	./.	./.	./.
chr13	50126382	rs2274278	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,39:32:40:0.975:2	0/1:0,21:33:21:1.00:2	0/1:0,3:32:3:1.00:2	0/1:19,34:33:53:0.642:2	0/1:0,53:32:53:1.00:2	0/1:0,39:32:39:1.00:2	0/1:41,33:32:74:0.446:2	0/1:25,35:32:60:0.583:2	0/1:25,30:33:55:0.545:2	0/1:0,33:33:33:1.00:2	0/1:19,23:32:42:0.548:2
chr13	50126389	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.	./.	./.
chr13	50134099	rs17073145	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,29:32:82:0.354:2	0/1:26,19:32:45:0.422:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	50134150	rs17073150	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,41:29:100:0.410:2	0/1:27,30:31:57:0.526:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	50140824	rs138308390	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,26:30:64:0.406:2	./.	./.	./.	./.	./.	./.
chr13	50141345	rs4942848	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,32:32:61:0.525:2	0/1:22,22:31:44:0.500:2	0/1:0,14:31:14:1.00:2	0/1:71,56:30:129:0.441:2	0/1:0,125:31:126:1.00:2	0/1:0,114:31:114:1.00:2	0/1:84,58:31:142:0.408:2	0/1:68,56:31:124:0.452:2	0/1:57,36:31:93:0.387:2	0/1:0,86:30:86:1.00:2	0/1:48,46:30:94:0.489:2
chr13	50141362	rs9562900	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:28,29:32:57:0.509:2	0/1:24,18:32:42:0.429:2	./.	./.	./.	./.	./.	0/1:117,4:32:121:0.033:2	./.	./.	./.
chr13	50204880	rs3803186	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,29:34:42:0.690:2	./.	./.
chr13	50205025	rs3803185	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,12:30:29:0.414:2	0/1:16,10:29:26:0.385:2	./.	0/1:22,27:30:49:0.551:2	0/1:25,16:28:41:0.390:2	0/1:0,50:30:50:1.00:2	./.	0/1:28,28:30:56:0.500:2	./.	./.	0/1:28,24:30:52:0.462:2
chr13	50205495	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,13:31:25:0.520:2
chr13	50205497	rs191040016	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,6:31:10:0.600:2	./.	./.	./.	./.	./.	./.
chr13	50206328	rs1535467	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:7,12:32:19:0.632:2	0/1:10,4:32:14:0.286:2	0/1:1,3:33:4:0.750:2	0/1:9,13:32:22:0.591:2	./.	0/1:0,24:32:24:1.00:2	./.	0/1:11,8:31:20:0.421:2	./.	./.	0/1:6,13:32:19:0.684:2
chr13	50206955	rs61959909	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,27:32:93:0.290:2	0/1:37,15:31:52:0.288:2	./.	./.	./.	./.	0/1:58,18:33:76:0.237:2	./.
chr13	50207133	rs9535277	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,19:30:35:0.543:2	0/1:18,22:30:40:0.550:2	./.	0/1:31,26:29:57:0.456:2	0/1:20,16:31:36:0.444:2	0/1:2,34:29:36:0.944:2	./.	0/1:25,17:29:42:0.405:2	./.	./.	0/1:37,24:31:61:0.393:2
chr13	50207220	rs9526582	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,8:27:28:0.286:2	0/1:14,4:31:18:0.222:2	./.	0/1:24,27:30:51:0.529:2	0/1:13,17:28:30:0.567:2	0/1:0,25:30:25:1.00:2	./.	0/1:24,21:30:45:0.467:2	./.	./.	0/1:33,24:30:57:0.421:2
chr13	50283819	rs17073322	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,28:27:57:0.491:2	./.	./.	./.	./.
chr13	50296115	rs1127021	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,41:29:42:0.976:2	0/1:0,16:28:16:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,80:30:80:1.00:2	0/1:30,19:30:49:0.388:2	0/1:0,49:29:49:1.00:2	0/1:34,27:29:61:0.443:2	0/1:43,32:29:75:0.427:2	0/1:0,64:30:64:1.00:2	./.	0/1:41,27:29:68:0.397:2
chr13	50587718	rs2760921	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,64:31:65:0.985:2	0/1:0,32:29:32:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,72:32:72:1.00:2
chr13	50588494	rs201280640	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	./.	0/1:1,4:32:5:0.800:2
chr13	50588496	rs10676627	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	0/1:1,2:31:3:0.667:2	./.	0/1:1,4:32:5:0.800:2
chr13	50590423	rs2066549	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,12:33:18:0.667:2	0/1:8,5:34:13:0.385:2	./.	./.	0/1:9,6:30:15:0.400:2	./.	0/1:13,11:33:24:0.458:2	./.
chr13	50590614	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,19:32:28:0.679:2	./.	./.
chr13	50590838	rs66756338	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,58:31:140:0.414:2	./.	0/1:72,71:32:144:0.497:2	0/1:73,67:31:140:0.479:2	./.	0/1:75,74:32:149:0.497:2	./.
chr13	50590871	rs2066550	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,55:31:107:0.514:2	0/1:35,46:32:81:0.568:2	./.	./.	./.	0/1:62,41:31:103:0.398:2	./.	./.	0/1:87,51:33:138:0.370:2	./.	./.
chr13	50591342	rs60828549	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,3:27:13:0.231:2	./.	0/1:7,6:32:13:0.462:2	0/1:10,7:32:17:0.412:2	./.	0/1:2,11:31:13:0.846:2	./.
chr13	50591480	rs2803836	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:31:73:1.00:2	0/1:0,49:29:49:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,70:30:70:1.00:2	0/1:0,48:29:48:1.00:2	0/1:0,93:29:93:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,59:28:59:1.00:2	0/1:0,65:30:65:1.00:2	0/1:1,52:30:53:0.981:2	0/1:1,83:29:84:0.988:2
chr13	50592060	rs61961301	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,67:32:135:0.496:2	./.	0/1:84,66:33:150:0.440:2	0/1:87,104:33:191:0.545:2	./.	0/1:49,65:33:114:0.570:2	./.
chr13	50592572	rs1043208	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,16:33:35:0.457:2	./.	0/1:13,19:33:32:0.594:2	0/1:44,18:32:62:0.290:2	./.	0/1:27,25:33:52:0.481:2	./.
chr13	50656582	rs2066575	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,33:30:66:0.500:2	0/1:15,13:32:28:0.464:2	./.	./.	0/1:39,31:31:70:0.443:2	./.	0/1:37,24:31:61:0.393:2	./.
chr13	51287408	rs41284836	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,34:32:34:1.00:2	0/1:25,36:32:61:0.590:2	./.	0/1:30,24:32:54:0.444:2	0/1:38,38:33:76:0.500:2	./.	./.
chr13	51417535	rs898861	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr13	51590433	rs17075173	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,66:31:139:0.475:2
chr13	51594741	rs1328361	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,39:31:98:0.398:2	0/1:30,42:32:72:0.583:2	0/1:2,3:33:5:0.600:2	0/1:2,101:31:103:0.981:2	./.	./.	0/1:7,105:32:112:0.938:2	./.	0/1:37,56:33:93:0.602:2	0/1:0,95:32:95:1.00:2	0/1:1,135:31:136:0.993:2
chr13	51603768	rs9568497	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,53:33:106:0.500:2	0/1:31,24:32:55:0.436:2	0/1:6,10:32:16:0.625:2	0/1:78,71:33:149:0.477:2	./.	./.	0/1:0,96:33:96:1.00:2	./.	./.	0/1:0,91:33:91:1.00:2	0/1:1,120:33:121:0.992:2
chr13	51922450	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,14:11:87:0.163:2
chr13	51939977	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,6:31:157:0.038:2	./.	0/1:170,4:32:174:0.023:2
chr13	51941943	rs61749884	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,69:31:153:0.451:2	./.	./.
chr13	51943250	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:30:83:0.048:2	./.
chr13	51943265	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:126,4:30:131:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr13	51948475	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:32:110:0.036:2	./.	./.	./.	./.	./.
chr13	51948534	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:32:79:0.051:2	./.	./.	./.	./.	./.
chr13	51956225	rs61749885	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,45:33:131:0.344:2	./.	./.
chr13	52313195	rs1885854	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,63:32:135:0.467:2	./.	0/1:62,37:33:99:0.374:2
chr13	52332329	rs35409673	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,61:32:117:0.521:2	0/1:35,38:32:73:0.521:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	52343391	rs10676	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:33:6:0.667:2	0/1:0,4:31:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	52365354	rs61729904	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,43:32:97:0.443:2	./.	0/1:46,35:30:81:0.432:2	./.	0/1:33,25:31:58:0.431:2	./.	./.	./.
chr13	52439521	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,9:15:67:0.134:2
chr13	52440130	rs1054515	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,7:28:23:0.304:2	./.	0/1:16,11:27:27:0.407:2	./.	0/1:9,12:30:21:0.571:2	./.	./.
chr13	52440287	rs41292778	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,52:30:82:0.634:2	./.	./.
chr13	52515354	rs1801249	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,71:32:73:0.973:2	0/1:0,38:32:38:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,60:32:60:1.00:2	0/1:39,28:32:67:0.418:2	0/1:0,62:32:62:1.00:2	0/1:38,33:32:71:0.465:2	0/1:3,77:32:80:0.963:2	0/1:0,79:32:79:1.00:2	0/1:1,50:31:51:0.980:2	0/1:0,79:31:79:1.00:2
chr13	52516529	rs373081328	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,12:31:32:0.375:2	./.	./.	./.	./.	./.
chr13	52520435	rs1801248	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,13:33:30:0.433:2	./.
chr13	52520471	rs1801247	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,26:30:47:0.553:2	0/1:26,25:31:51:0.490:2	./.	./.	./.	./.	./.	./.	0/1:18,23:31:41:0.561:2	0/1:19,18:29:37:0.486:2	./.
chr13	52523808	rs732774	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,28:32:28:1.00:2	0/1:1,18:32:19:0.947:2	./.	0/1:0,35:31:35:1.00:2	0/1:16,10:32:26:0.385:2	0/1:0,35:31:35:1.00:2	0/1:10,17:32:27:0.630:2	0/1:0,21:31:21:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,29:32:29:1.00:2
chr13	52523912	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,7:31:20:0.350:2	./.	./.	./.	./.	./.
chr13	52524488	rs1061472	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,55:32:58:0.948:2	0/1:0,28:33:28:1.00:2	0/1:0,3:24:3:1.00:2	0/1:0,41:32:41:1.00:2	0/1:41,26:32:67:0.388:2	0/1:1,67:32:68:0.985:2	0/1:54,40:32:94:0.426:2	0/1:0,75:32:75:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,67:32:67:1.00:2
chr13	52532623	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:31:160:0.025:2	./.	./.	./.	./.	./.
chr13	52544805	rs1801244	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:33:76:1.00:2	0/1:1,58:32:59:0.983:2	0/1:0,12:33:12:1.00:2	0/1:62,48:33:110:0.436:2	0/1:41,65:32:106:0.613:2	0/1:0,78:32:78:1.00:2	0/1:44,50:32:94:0.532:2	0/1:1,95:32:96:0.990:2	0/1:2,102:34:104:0.981:2	0/1:55,42:33:97:0.433:2	0/1:0,123:33:123:1.00:2
chr13	52548140	rs1801243	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,100:30:101:0.990:2	0/1:2,58:29:60:0.967:2	0/1:0,9:30:9:1.00:2	0/1:66,48:29:114:0.421:2	0/1:70,67:30:137:0.489:2	0/1:4,104:29:108:0.963:2	0/1:46,51:29:97:0.526:2	0/1:4,118:30:122:0.967:2	0/1:1,145:31:146:0.993:2	0/1:53,68:30:121:0.562:2	0/1:2,130:29:132:0.985:2
chr13	52598799	rs61958802	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,39:32:75:0.520:2	./.
chr13	52603047	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,8:31:57:0.140:2	./.	0/1:123,6:31:129:0.047:2	./.	./.
chr13	52603089	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,8:32:64:0.125:2	./.	0/1:121,6:32:127:0.047:2	./.	./.
chr13	52603194	rs3742289	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,122:31:123:0.992:2	0/1:0,70:32:70:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,138:31:138:1.00:2	0/1:46,45:31:91:0.495:2	0/1:1,135:31:136:0.993:2	0/1:41,50:31:91:0.549:2	0/1:3,133:31:136:0.978:2	0/1:0,153:32:153:1.00:2	0/1:1,109:32:110:0.991:2	0/1:1,188:31:190:0.995:2
chr13	52603216	rs144836764	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:33:131:0.031:2	./.	./.	./.
chr13	52603241	rs3742290	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,39:30:103:0.379:2	./.	./.	./.	./.	./.	./.	./.
chr13	52603504	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,3:33:34:0.088:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	52603540	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,3:33:40:0.075:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	52603605	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:33:38:0.079:2	./.
chr13	52603606	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:31:38:0.079:2	./.
chr13	52603665	rs1054780	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:32:46:0.087:2	./.	./.	0/1:53,3:33:56:0.054:2	./.
chr13	52603775	rs3742291	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,126:32:127:0.992:2	0/1:0,95:32:95:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,137:32:137:1.00:2	0/1:36,34:31:70:0.486:2	0/1:0,130:31:130:1.00:2	0/1:44,41:31:85:0.482:2	0/1:4,148:32:152:0.974:2	0/1:1,173:32:174:0.994:2	0/1:2,127:32:129:0.984:2	0/1:0,172:32:172:1.00:2
chr13	52604379	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:32:87:0.046:2	./.	./.	./.	./.	./.
chr13	52604946	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,5:31:81:0.062:2	./.	0/1:119,5:31:124:0.040:2	0/1:125,6:31:131:0.046:2	./.	0/1:104,5:28:109:0.046:2	./.
chr13	52605014	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:32:122:0.033:2	./.
chr13	52605043	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:130,4:31:134:0.030:2	./.	./.	./.	./.	./.	./.	0/1:139,5:28:144:0.035:2	./.	0/1:90,6:33:96:0.063:2	./.
chr13	52605675	rs2897964	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,76:30:77:0.987:2	0/1:1,54:29:55:0.982:2	0/1:0,14:30:14:1.00:2	0/1:1,89:29:90:0.989:2	0/1:60,32:28:92:0.348:2	0/1:0,117:29:117:1.00:2	0/1:53,42:29:95:0.442:2	0/1:2,102:29:104:0.981:2	0/1:1,91:31:92:0.989:2	0/1:1,78:30:79:0.987:2	0/1:0,108:29:108:1.00:2
chr13	52607169	rs1055062	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,50:32:51:0.980:2	0/1:0,19:32:19:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,27:32:27:1.00:2	0/1:11,13:32:24:0.542:2	0/1:0,39:32:39:1.00:2	0/1:15,10:32:25:0.400:2	0/1:1,27:33:29:0.964:2	0/1:2,35:32:37:0.946:2	0/1:1,32:33:33:0.970:2	0/1:0,50:32:50:1.00:2
chr13	52660472	rs35465612	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:32:13:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.
chr13	52661570	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,25:33:51:0.490:2	./.	./.	./.	./.
chr13	52667228	rs55715265	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,72:32:163:0.442:2	./.
chr13	52676275	rs34756139	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,19:33:34:0.559:2	./.	./.	./.	./.	./.	./.	./.
chr13	52709938	rs2296351	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,62:30:64:0.969:2	0/1:0,34:28:34:1.00:2	0/1:0,2:27:2:1.00:2	./.	0/1:0,62:28:62:1.00:2	0/1:0,64:29:64:1.00:2	0/1:28,27:29:55:0.491:2	0/1:2,61:29:63:0.968:2	0/1:0,114:30:114:1.00:2	./.	./.
chr13	52710327	rs189830443	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,32:31:99:0.323:2	./.	./.	./.	./.
chr13	52730259	rs17482764	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,35:32:76:0.461:2	./.	./.	./.	./.	./.	./.	0/1:42,38:32:80:0.475:2
chr13	52951802	rs9536041	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,45:31:98:0.459:2	./.
chr13	52952094	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,6:33:44:0.136:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	52952383	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,20:33:55:0.370:2
chr13	52952575	rs9536042	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,50:32:98:0.510:2	./.
chr13	52952680	rs9536043	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,29:30:43:0.674:2	./.
chr13	52971718	rs9536062	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,55:32:121:0.455:2	./.
chr13	52971893	rs3803264	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:32:43:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,3:33:3:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,34:31:34:1.00:2	0/1:1,34:29:35:0.971:2	0/1:0,47:32:47:1.00:2	0/1:0,17:32:17:1.00:2	0/1:1,33:32:34:0.971:2
chr13	53035665	rs35975899	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,14:32:29:0.483:2	./.
chr13	53035783	rs7337054	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,87:33:87:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,88:34:88:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,68:32:68:1.00:2
chr13	53035925	rs7335867	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:32:50:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,78:33:78:1.00:2	0/1:0,64:33:64:1.00:2	0/1:0,89:32:89:1.00:2
chr13	53217270	rs9536212	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	0/1:0,4:29:4:1.00:2	0/1:0,2:30:2:1.00:2	0/1:2,3:33:5:0.600:2	./.	0/1:0,5:28:5:1.00:2	./.	./.
chr13	53282749	rs61959654	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,86:31:189:0.455:2	./.
chr13	53418854	rs35458755	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,44:29:80:0.550:2	./.
chr13	53421562	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,6:30:8:0.750:2
chr13	53422553	rs3742301	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,14:30:27:0.519:2	0/1:4,5:31:9:0.556:2	0/1:9,8:28:17:0.471:2	./.	./.	0/1:4,8:30:12:0.667:2	./.
chr13	53602970	rs2298229	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,13:33:20:0.650:2	./.
chr13	53603077	rs35790097	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,11:31:24:0.458:2	./.	./.	./.	0/1:18,13:32:31:0.419:2
chr13	53608632	rs2298231	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,9:31:23:0.391:2	0/1:4,17:31:21:0.810:2	0/1:0,5:30:5:1.00:2	0/1:0,28:31:28:1.00:2	./.	0/1:21,12:28:33:0.364:2	0/1:15,10:31:25:0.400:2	0/1:0,15:29:15:1.00:2	0/1:14,17:32:31:0.548:2	0/1:0,28:31:28:1.00:2	0/1:27,23:31:50:0.460:2
chr13	55015081	rs811605	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,20:31:40:0.500:2	./.	./.	./.	0/1:28,23:32:51:0.451:2	./.	./.	./.
chr13	55015244	rs2785935	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:32:49:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,82:32:82:1.00:2	0/1:1,41:32:42:0.976:2	0/1:0,55:31:55:1.00:2	0/1:2,52:31:54:0.963:2	0/1:0,56:32:56:1.00:2	0/1:58,27:31:85:0.318:2	0/1:45,22:32:67:0.328:2	0/1:40,38:30:78:0.487:2
chr13	55015252	rs9591591	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,45:32:46:0.978:2	0/1:1,30:33:31:0.968:2	./.	./.	0/1:2,39:32:41:0.951:2	./.	0/1:1,55:32:56:0.982:2	0/1:30,28:32:58:0.483:2	0/1:51,25:33:76:0.329:2	./.	0/1:45,33:31:78:0.423:2
chr13	57715479	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,13:29:181:0.072:2	./.	./.	0/1:158,13:29:171:0.076:2
chr13	57716532	rs141549966	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,4:32:54:0.074:2	0/1:22,8:34:30:0.267:2	./.	./.	0/1:58,14:33:72:0.194:2	0/1:62,20:33:82:0.244:2	./.
chr13	57716793	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:143,12:29:156:0.077:2	./.	./.	./.	./.	./.	./.	./.
chr13	57716862	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,6:32:191:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr13	57716885	rs147534884	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,44:32:156:0.282:2	0/1:60,103:33:163:0.632:2	0/1:136,36:30:172:0.209:2	./.	0/1:144,42:33:186:0.226:2	./.
chr13	57717030	rs202049202	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,3:31:13:0.231:2	./.	./.	./.	./.	./.	./.
chr13	57721994	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,10:18:162:0.062:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	57722049	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,14:27:178:0.079:2	./.	./.	0/1:162,13:30:175:0.074:2
chr13	57723102	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,7:32:24:0.292:2	./.	./.	0/1:66,17:34:83:0.205:2	0/1:67,17:33:84:0.202:2	./.
chr13	57723363	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:138,15:31:153:0.098:2	./.	./.	./.	./.	./.	./.	./.
chr13	57723432	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,7:30:195:0.036:2	./.	./.	./.	./.	./.	./.	0/1:146,6:31:152:0.039:2
chr13	57723455	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,32:33:125:0.256:2	0/1:48,120:33:170:0.714:2	0/1:142,32:32:174:0.184:2	./.	0/1:145,30:29:177:0.171:2	./.
chr13	57728622	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,13:29:184:0.071:2	./.	./.	0/1:165,8:31:173:0.046:2
chr13	57729675	.	G	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,4:33:44:0.091:2	0/1:25,11:33:36:0.306:2	./.	./.	0/1:67,18:33:85:0.212:2	0/1:57,13:33:70:0.186:2	./.
chr13	57729936	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,13:30:124:0.105:2	./.	./.	./.	./.	./.	./.	./.
chr13	57730005	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:180,12:29:192:0.063:2	./.	./.	./.	./.	./.	./.	0/1:156,9:28:165:0.055:2
chr13	57730028	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,29:32:134:0.218:2	0/1:47,113:33:160:0.706:2	0/1:144,31:31:176:0.177:2	./.	0/1:150,22:29:172:0.128:2	./.
chr13	57735193	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,15:28:184:0.082:2	./.	./.	0/1:169,7:31:176:0.040:2
chr13	57736246	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,8:32:71:0.113:2	./.	./.	./.	0/1:66,11:34:77:0.143:2	0/1:57,9:34:66:0.136:2	./.
chr13	57736507	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:132,22:31:154:0.143:2	./.	./.	./.	./.	./.	./.	./.
chr13	57736576	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,9:31:193:0.047:2	./.	./.	./.	./.	./.	./.	0/1:168,10:27:178:0.056:2
chr13	57736599	rs148875346	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,35:32:129:0.271:2	0/1:53,111:32:164:0.677:2	0/1:151,35:33:186:0.188:2	./.	0/1:126,31:32:157:0.197:2	./.
chr13	57741758	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,16:28:185:0.086:2	./.	./.	0/1:160,8:28:168:0.048:2
chr13	57742811	.	G	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,4:33:39:0.103:2	0/1:15,3:31:18:0.167:2	./.	./.	0/1:78,17:34:95:0.179:2	0/1:49,14:33:63:0.222:2	./.
chr13	57743072	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:131,11:32:142:0.077:2	./.	./.	./.	./.	./.	./.	./.
chr13	57743141	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:181,9:30:190:0.047:2	./.	./.	./.	./.	./.	./.	0/1:172,13:31:185:0.070:2
chr13	57743164	rs143783332	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,36:31:142:0.254:2	0/1:64,110:32:175:0.632:2	0/1:146,33:32:180:0.184:2	./.	0/1:146,25:33:171:0.146:2	./.
chr13	58207031	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:32:45:0.089:2	./.
chr13	60240961	rs9538494	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,66:31:149:0.443:2	0/1:82,51:31:133:0.383:2	0/1:16,5:30:21:0.238:2	0/1:83,86:30:169:0.509:2	0/1:1,146:30:147:0.993:2	0/1:91,83:30:174:0.477:2	0/1:82,77:31:159:0.484:2	./.	0/1:102,92:32:194:0.474:2	./.	0/1:102,91:32:194:0.472:2
chr13	61102589	rs61968686	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,17:32:38:0.447:2	./.	./.	./.
chr13	61103155	rs147499826	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:33:95:0.043:2	./.
chr13	61985951	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,7:33:31:0.226:2	./.	./.	./.
chr13	61986918	rs3812872	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,30:32:31:0.968:2	0/1:0,25:32:25:1.00:2	0/1:0,6:28:6:1.00:2	0/1:1,20:30:21:0.952:2	0/1:0,16:31:16:1.00:2	0/1:21,14:31:35:0.400:2	0/1:9,8:31:17:0.471:2	0/1:16,15:31:31:0.484:2	./.	0/1:0,20:31:20:1.00:2	0/1:23,22:29:45:0.489:2
chr13	61989175	rs3812874	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,46:31:108:0.426:2	./.	./.	./.	./.
chr13	66878874	rs149158184	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,90:31:186:0.484:2	./.	./.	./.	./.	./.	./.	./.
chr13	67800935	rs9571740	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,61:31:61:1.00:2	0/1:0,34:30:34:1.00:2	./.	0/1:33,25:30:58:0.431:2	0/1:30,27:30:57:0.474:2	0/1:36,20:29:56:0.357:2	0/1:32,27:29:59:0.458:2	0/1:40,40:30:80:0.500:2	./.	0/1:30,21:30:51:0.412:2	./.
chr13	67802339	rs8000556	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:30:38:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,49:29:49:1.00:2	0/1:24,17:29:41:0.415:2	0/1:0,35:29:35:1.00:2	0/1:0,36:30:36:1.00:2	0/1:1,51:30:53:0.981:2	0/1:0,37:31:37:1.00:2	0/1:0,25:30:25:1.00:2	0/1:1,61:29:62:0.984:2
chr13	70413291	rs41283972	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,30:32:66:0.455:2	./.	./.	0/1:60,30:33:90:0.333:2
chr13	70681453	rs147593232	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,64:31:132:0.485:2	0/1:42,28:32:70:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	73293206	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,3:33:22:0.136:2	./.	./.	./.
chr13	73293211	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,3:32:17:0.176:2	./.	./.	./.
chr13	73301655	rs1465897	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,22:31:22:1.00:2	0/1:0,13:32:13:1.00:2	./.	0/1:0,35:31:35:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,32:29:32:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,11:28:11:1.00:2	0/1:0,14:28:14:1.00:2
chr13	73301728	rs1465896	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,2:30:2:1.00:2	0/1:0,5:31:5:1.00:2	./.	0/1:0,8:28:8:1.00:2	0/1:0,4:28:4:1.00:2	0/1:0,11:29:11:1.00:2	./.	0/1:0,3:27:3:1.00:2	0/1:0,4:27:4:1.00:2	0/1:0,3:29:3:1.00:2	0/1:0,2:28:2:1.00:2
chr13	73318710	rs75234913	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,35:33:52:0.673:2	0/1:8,12:33:20:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	73319236	rs9543107	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,10:32:32:0.313:2	./.	./.	./.	./.	./.	./.	./.
chr13	73320856	rs41286054	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,56:32:98:0.571:2	./.	./.	./.	./.	./.
chr13	73329358	rs10887	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,14:28:14:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,2:31:2:1.00:2	./.	0/1:0,9:29:9:1.00:2	0/1:17,7:30:24:0.292:2	0/1:0,15:28:15:1.00:2	0/1:15,6:30:22:0.286:2	0/1:0,29:30:29:1.00:2	0/1:21,12:30:33:0.364:2	0/1:1,39:30:40:0.975:2
chr13	73343039	rs2196979	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,86:32:86:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,6:32:6:1.00:2	./.	0/1:0,91:32:91:1.00:2	0/1:46,46:31:92:0.500:2	0/1:0,74:32:74:1.00:2	0/1:50,34:32:84:0.405:2	0/1:0,73:33:73:1.00:2	0/1:41,25:31:66:0.379:2	0/1:0,88:31:88:1.00:2
chr13	73346905	rs35288597	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,62:32:114:0.544:2	./.	0/1:63,38:32:101:0.376:2	./.
chr13	73349359	rs7332388	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,5:34:17:0.294:2	./.	0/1:63,61:32:124:0.492:2	0/1:83,43:32:126:0.341:2	0/1:1,90:33:91:0.989:2	./.	0/1:0,122:33:122:1.00:2	0/1:69,75:33:144:0.521:2	0/1:110,68:33:178:0.382:2
chr13	73350079	rs4883918	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,35:32:35:1.00:2	0/1:0,14:31:14:1.00:2	0/1:4,4:31:8:0.500:2	./.	0/1:19,15:31:34:0.441:2	./.	./.	0/1:22,23:32:45:0.511:2	./.	./.	0/1:31,23:32:54:0.426:2
chr13	73369642	rs1372000	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,20:32:50:0.400:2	0/1:39,42:32:81:0.519:2	0/1:26,35:32:61:0.574:2	./.	0/1:29,63:33:92:0.685:2	0/1:15,45:32:60:0.750:2	0/1:59,57:33:116:0.491:2
chr13	73401237	rs61999297	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,20:31:50:0.400:2	./.	0/1:22,26:32:48:0.542:2	./.
chr13	74339104	rs3764134	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,17:32:17:1.00:2	0/1:0,6:33:6:1.00:2	./.	0/1:16,6:33:22:0.273:2	./.	./.	0/1:5,3:32:8:0.375:2	0/1:7,11:32:18:0.611:2	0/1:0,12:32:12:1.00:2	0/1:0,7:32:7:1.00:2	0/1:19,11:32:30:0.367:2
chr13	74420323	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:31:111:0.036:2	./.
chr13	74518210	rs9573330	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:10,7:31:17:0.412:2	0/1:5,8:31:13:0.615:2	./.	./.	0/1:7,3:28:10:0.300:2	./.	./.	0/1:8,6:30:14:0.429:2	./.	0/1:0,7:32:7:1.00:2	0/1:4,9:32:13:0.692:2
chr13	75861001	rs557337	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:161,5:27:166:0.030:2	./.	./.	./.	./.	./.	./.	0/1:115,84:32:199:0.422:2	./.	0/1:2,176:32:178:0.989:2
chr13	75863116	rs76851570	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,55:32:106:0.519:2	./.	./.	./.	./.	./.
chr13	75866284	rs9600455	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,24:32:52:0.462:2	0/1:21,11:30:32:0.344:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	75873709	rs184774790	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,17:31:38:0.447:2	./.	./.	./.	./.	./.	./.	./.
chr13	75876389	rs2297208	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:33:42:1.00:2	0/1:1,36:32:37:0.973:2	0/1:1,6:32:7:0.857:2	0/1:33,28:32:61:0.459:2	0/1:24,14:31:38:0.368:2	0/1:14,33:31:47:0.702:2	0/1:24,22:32:46:0.478:2	0/1:38,24:32:62:0.387:2	./.	0/1:24,28:33:52:0.538:2	./.
chr13	75884118	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,4:30:84:0.048:2	./.	./.	./.	./.	./.	./.
chr13	75884216	rs1062087	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:30:40:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,23:29:23:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,27:30:27:1.00:2	0/1:25,25:30:50:0.500:2	0/1:0,44:30:44:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,40:30:40:1.00:2
chr13	75915362	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,6:32:123:0.049:2	./.	./.
chr13	75923324	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:32:69:0.058:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	75936519	rs7983969	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:27:53:1.00:2	0/1:0,28:27:28:1.00:2	0/1:0,4:27:4:1.00:2	0/1:0,85:28:85:1.00:2	0/1:0,73:27:73:1.00:2	0/1:0,58:27:58:1.00:2	0/1:0,48:27:48:1.00:2	0/1:0,57:27:57:1.00:2	0/1:0,47:28:47:1.00:2	0/1:0,47:27:47:1.00:2	0/1:1,44:26:45:0.978:2
chr13	75936608	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:30:141:0.029:2	./.	./.	./.	./.
chr13	75936636	rs17254379	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,47:30:126:0.373:2	./.	./.	./.	./.
chr13	76055602	rs77685055	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:27:9:0.556:2	./.	./.	0/1:20,20:29:40:0.500:2	./.	./.	./.	./.	./.
chr13	76055820	rs7327548	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:29:11:1.00:2	0/1:0,13:28:13:1.00:2	./.	./.	0/1:13,23:29:37:0.639:2	./.	./.	0/1:0,22:27:22:1.00:2	./.	0/1:16,6:30:22:0.273:2	./.
chr13	76101979	rs77512031	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,6:32:21:0.286:2	./.	./.	./.	./.	./.
chr13	76124151	rs8192738	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:31:7:1.00:2	0/1:61,52:32:113:0.460:2	0/1:0,82:31:82:1.00:2	./.	0/1:50,35:32:85:0.412:2	0/1:77,42:32:119:0.353:2	0/1:0,116:32:116:1.00:2	0/1:46,49:32:95:0.516:2	0/1:0,114:31:114:1.00:2
chr13	76143572	rs2296146	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,6:29:13:0.462:2	./.	./.	./.	./.	./.
chr13	76335109	rs17706535	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:33:3:1.00:2	0/1:13,29:32:42:0.690:2	./.	./.	0/1:0,17:32:17:1.00:2	./.	0/1:25,27:33:52:0.519:2	0/1:1,41:32:42:0.976:2	0/1:28,31:33:59:0.525:2
chr13	76378459	rs625033	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:34:28:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,45:33:45:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,35:33:35:1.00:2	0/1:25,12:32:37:0.324:2	0/1:0,41:33:41:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,55:33:55:1.00:2
chr13	76383353	rs9530469	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,33:32:81:0.407:2	0/1:75,50:31:125:0.400:2	./.	./.	0/1:64,65:33:129:0.504:2	./.	./.
chr13	76395464	rs41286126	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,10:31:26:0.385:2	./.	./.	0/1:28,18:33:46:0.391:2	./.	./.
chr13	76395620	rs9593132	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,55:31:119:0.462:2	./.	./.	./.	./.
chr13	76397731	rs4884021	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,33:30:61:0.541:2	0/1:32,40:30:72:0.556:2	./.	./.	./.
chr13	76409436	rs2273997	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:26,20:32:46:0.435:2	0/1:17,8:32:25:0.320:2	./.	0/1:0,40:32:40:1.00:2	./.	0/1:0,32:32:32:1.00:2	0/1:23,14:33:37:0.378:2	0/1:10,21:32:31:0.677:2	0/1:0,55:33:55:1.00:2	0/1:25,20:33:45:0.444:2	./.
chr13	76423248	rs7986131	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:23,15:31:38:0.395:2	0/1:17,10:29:27:0.370:2	./.	0/1:0,32:31:32:1.00:2	./.	0/1:1,38:30:39:0.974:2	0/1:2,36:29:38:0.947:2	0/1:1,38:30:39:0.974:2	0/1:0,52:31:52:1.00:2	0/1:0,22:30:22:1.00:2	0/1:20,23:29:43:0.535:2
chr13	76427347	rs7988661	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,25:31:43:0.581:2	./.	./.	./.
chr13	76427403	rs71434812	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,22:30:35:0.629:2	./.	./.	./.
chr13	76427410	rs7988841	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,23:28:37:0.622:2	./.	./.	./.
chr13	77460367	rs700371	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.
chr13	77527764	rs17385627	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,6:31:25:0.261:2	./.	./.	./.	./.	./.	./.	./.	0/1:98,72:31:170:0.424:2
chr13	77529486	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,12:33:20:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr13	77531361	rs41287034	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,34:31:69:0.493:2	./.
chr13	77531652	rs7995462	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,61:32:125:0.488:2	./.	./.	./.	./.	./.
chr13	77566090	rs77416795	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:33:4:1.00:2
chr13	77574606	rs138611001	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,19:30:42:0.452:2
chr13	77574983	rs1800209	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,24:33:51:0.471:2	./.	./.	./.
chr13	77625946	rs117836900	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,40:32:86:0.465:2	./.	./.	./.	./.	./.	./.	./.
chr13	77625982	rs370673788	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,48:31:103:0.466:2
chr13	77632470	rs2285386	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,7:31:24:0.292:2	./.	./.	./.	./.	./.	./.	./.	./.
chr13	77638801	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:33:135:0.030:2
chr13	77641899	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,50:31:95:0.526:2	./.	./.	./.	./.	./.	./.	./.
chr13	77672926	rs116957494	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,60:32:116:0.517:2	./.	./.	./.	./.	./.	./.
chr13	77724978	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:131,4:31:135:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr13	77738664	rs2274547	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,15:32:36:0.417:2	./.	./.	./.	./.	0/1:26,28:33:54:0.519:2	0/1:29,20:32:49:0.408:2	./.
chr13	77751892	rs4885445	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,16:33:16:1.00:2	0/1:1,10:33:11:0.909:2	./.	0/1:11,7:32:18:0.389:2	0/1:0,22:31:22:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,30:31:30:1.00:2	0/1:17,15:33:32:0.469:2	0/1:18,7:31:25:0.280:2	0/1:0,25:32:25:1.00:2
chr13	77765881	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:171,4:33:175:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr13	78142426	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,37:33:113:0.327:2
chr13	78146301	rs678047	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,91:32:91:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,82:31:82:1.00:2	0/1:0,107:31:107:1.00:2	0/1:1,100:32:101:0.990:2	0/1:0,91:33:91:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,107:32:107:1.00:2
chr13	78178550	rs2274016	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,3:29:14:0.214:2	./.	./.	./.	./.
chr13	78188078	rs8002725	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:75,38:33:113:0.336:2	0/1:38,21:33:59:0.356:2	./.	0/1:52,75:32:127:0.591:2	./.	0/1:74,61:33:135:0.452:2	./.	./.	0/1:78,87:33:165:0.527:2	0/1:73,64:33:137:0.467:2	./.
chr13	78192207	rs9574090	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,120:31:120:1.00:2	0/1:0,69:29:69:1.00:2	0/1:10,6:31:16:0.375:2	0/1:93,67:31:160:0.419:2	0/1:3,81:29:84:0.964:2	0/1:116,75:30:191:0.393:2	./.	0/1:109,78:30:187:0.417:2	0/1:95,98:31:193:0.508:2	0/1:0,131:30:131:1.00:2	0/1:1,151:30:152:0.993:2
chr13	78202064	rs374021238	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,24:33:37:0.649:2	./.	./.	./.	./.	./.	./.	./.
chr13	78208499	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:32:58:0.069:2	./.	./.	./.	./.
chr13	78216873	rs1053985	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:33:45:1.00:2	0/1:0,22:33:22:1.00:2	0/1:4,9:33:13:0.692:2	0/1:28,23:33:51:0.451:2	0/1:23,4:34:27:0.148:2	0/1:26,20:33:46:0.435:2	./.	0/1:0,43:32:43:1.00:2	0/1:33,21:33:54:0.389:2	0/1:36,15:33:51:0.294:2	0/1:31,25:31:56:0.446:2
chr13	78216915	rs2813739	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,38:32:80:0.475:2	./.	0/1:31,33:31:64:0.516:2	./.	./.	0/1:39,22:33:61:0.361:2	0/1:30,49:32:79:0.620:2	0/1:45,40:32:85:0.471:2
chr13	78320988	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:31:84:0.048:2	./.	./.	./.
chr13	78327455	rs148135081	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,23:33:59:0.390:2	./.	./.	./.	./.
chr13	78475313	rs5351	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,20:33:37:0.541:2	0/1:16,12:33:28:0.429:2	./.	0/1:24,6:34:30:0.200:2	0/1:22,15:32:37:0.405:2	0/1:1,34:32:35:0.971:2	0/1:33,12:33:45:0.267:2	0/1:1,35:32:36:0.972:2	0/1:21,26:33:47:0.553:2	0/1:1,36:32:38:0.973:2	0/1:19,15:30:34:0.441:2
chr13	78477674	rs5348	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:30:69:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,73:29:73:1.00:2	0/1:0,70:29:70:1.00:2	0/1:0,105:30:105:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,80:30:80:1.00:2	0/1:2,69:30:71:0.972:2
chr13	79189738	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:34:119:0.034:2	./.	./.
chr13	79233205	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:32:123:0.033:2	./.	./.	./.	./.	./.
chr13	79908498	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:198:0.020:2
chr13	79940811	rs7327603	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,13:33:30:0.464:2	0/1:5,19:30:24:0.792:2	0/1:2,8:32:10:0.800:2	0/1:1,41:31:42:0.976:2	./.	./.	0/1:0,30:32:30:1.00:2	0/1:27,12:30:39:0.308:2	0/1:11,17:33:28:0.607:2	0/1:0,41:32:41:1.00:2	0/1:0,30:32:30:1.00:2
chr13	79943022	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:32:183:0.022:2	./.	./.	./.
chr13	80055495	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	80095030	rs11549502	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,45:32:120:0.375:2	0/1:49,57:32:106:0.538:2	0/1:49,45:33:94:0.479:2	0/1:39,31:31:71:0.443:2	./.
chr13	80125237	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:32:111:0.036:2	./.
chr13	80911525	rs504122	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,36:31:73:0.493:2	0/1:32,26:31:58:0.448:2	0/1:4,4:31:8:0.500:2	0/1:1,77:31:78:0.987:2	0/1:43,53:31:96:0.552:2	./.	./.	0/1:0,102:31:102:1.00:2	0/1:56,51:32:107:0.477:2	./.	0/1:1,88:31:89:0.989:2
chr13	82264343	rs7326041	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,137:33:138:0.993:2	0/1:7,77:32:84:0.917:2	0/1:14,13:33:27:0.481:2	0/1:107,83:32:190:0.437:2	0/1:2,148:32:150:0.987:2	./.	0/1:0,164:33:164:1.00:2	0/1:124,67:32:192:0.351:2	./.	0/1:2,167:32:169:0.988:2	0/1:1,180:32:182:0.994:2
chr13	82264468	rs9574945	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:14,21:33:35:0.600:2	0/1:22,10:32:32:0.313:2	0/1:1,2:33:3:0.667:2	./.	0/1:19,25:31:44:0.568:2	./.	0/1:13,17:33:30:0.567:2	0/1:45,23:32:68:0.338:2	./.	0/1:0,41:33:41:1.00:2	0/1:0,39:33:39:1.00:2
chr13	82264883	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:31:111:0.036:2	./.	./.	./.	./.	./.
chr13	82264918	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr13	82264969	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:32:172:0.023:2	./.	./.	./.	./.
chr13	82264992	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:32:199:0.020:2	./.	./.	./.	./.
chr13	82265002	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:181,6:26:187:0.032:2	./.	0/1:190,7:29:197:0.036:2	./.	./.	./.	./.
chr13	82265050	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,9:29:182:0.049:2	./.	./.	./.	0/1:176,5:32:181:0.028:2	./.
chr13	82265080	rs74098205	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:62,69:32:131:0.527:2	0/1:51,40:32:91:0.440:2	./.	./.	0/1:69,4:30:73:0.055:2	./.	0/1:40,32:32:72:0.444:2	./.	./.	./.	./.
chr13	84454871	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:32:151:0.026:2
chr13	84455886	rs202038566	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,6:21:9:0.667:2	0/1:9,4:20:13:0.308:2	0/1:9,5:23:14:0.357:2	./.	./.	./.	./.
chr13	86369120	rs3825413	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:31:40:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,9:30:9:1.00:2	0/1:29,29:31:58:0.500:2	0/1:31,13:31:44:0.295:2	0/1:1,55:30:56:0.982:2	./.	0/1:38,38:30:76:0.500:2	0/1:0,50:31:50:1.00:2	./.	0/1:35,26:32:62:0.426:2
chr13	88330594	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:31:80:0.050:2	./.	./.	./.	./.	./.
chr13	92345579	rs553717	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,53:31:102:0.520:2	./.	./.	./.	./.	0/1:89,59:32:148:0.399:2
chr13	93879774	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,4:31:109:0.037:2	./.	./.	./.	./.	./.	./.
chr13	94197627	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:34:95:0.042:2	./.
chr13	95034749	rs1535692	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:90,95:31:185:0.514:2	0/1:58,56:31:114:0.491:2	./.	0/1:3,167:32:170:0.982:2	0/1:75,85:32:160:0.531:2	./.	./.
chr13	95034763	rs2274020	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,65:31:128:0.508:2	./.	./.	./.	./.	./.	0/1:65,65:31:130:0.500:2	./.
chr13	95092217	rs200349922	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:36:139:0.029:2
chr13	95097956	rs755684	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,14:31:14:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,4:32:4:1.00:2	0/1:19,15:31:34:0.441:2	0/1:0,18:30:18:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,23:31:23:1.00:2	0/1:17,19:31:36:0.528:2	0/1:15,6:32:21:0.286:2	0/1:0,34:32:34:1.00:2
chr13	95112423	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:33:152:0.026:2	./.	./.
chr13	95264604	rs9524559	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,17:33:53:0.321:2	0/1:20,12:32:32:0.375:2	./.	0/1:29,34:32:63:0.540:2	0/1:24,22:32:46:0.478:2	./.	./.	0/1:43,38:32:81:0.469:2	./.	0/1:29,28:32:57:0.491:2	0/1:0,70:33:70:1.00:2
chr13	95364046	rs1060474	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:31:37:1.00:2	0/1:1,35:31:36:0.972:2	0/1:4,3:32:7:0.429:2	0/1:35,22:32:57:0.386:2	0/1:0,36:31:36:1.00:2	0/1:21,23:32:44:0.523:2	0/1:25,9:31:34:0.265:2	./.	0/1:35,17:32:52:0.327:2	0/1:22,22:32:44:0.500:2	0/1:28,22:32:50:0.440:2
chr13	95364337	rs2253604	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.	./.	./.	0/1:0,4:31:4:1.00:2
chr13	95714976	rs1751034	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,43:32:45:0.956:2	0/1:0,30:32:30:1.00:2	0/1:0,3:32:3:1.00:2	0/1:37,28:32:65:0.431:2	0/1:0,39:31:39:1.00:2	0/1:18,27:32:45:0.600:2	0/1:8,20:31:28:0.714:2	0/1:27,47:32:74:0.635:2	0/1:0,67:32:67:1.00:2	0/1:0,51:32:51:1.00:2	0/1:38,35:32:73:0.479:2
chr13	95726541	rs1189466	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,38:29:38:1.00:2	0/1:0,22:30:22:1.00:2	./.	0/1:0,58:31:58:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,51:29:51:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,58:30:58:1.00:2	0/1:0,43:29:43:1.00:2
chr13	95727780	rs1678339	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:33:46:1.00:2	0/1:0,39:33:39:1.00:2	0/1:3,8:32:11:0.727:2	0/1:0,81:33:81:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,54:31:54:1.00:2	0/1:2,40:32:42:0.952:2	0/1:0,62:33:62:1.00:2	0/1:0,44:33:44:1.00:2	0/1:0,71:32:71:1.00:2
chr13	95815834	rs11568650	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,33:32:64:0.516:2	./.	./.	./.	./.	0/1:28,34:33:62:0.548:2	./.	./.
chr13	95816707	rs11568666	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,30:32:60:0.500:2	./.	./.	./.	./.
chr13	95858978	rs2274405	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:27:50:1.00:2	0/1:0,35:28:35:1.00:2	0/1:0,6:28:6:1.00:2	0/1:62,52:28:114:0.456:2	./.	0/1:36,33:28:69:0.478:2	0/1:1,100:28:101:0.990:2	0/1:0,94:28:94:1.00:2	0/1:0,77:29:77:1.00:2	0/1:45,38:28:83:0.458:2	0/1:40,36:29:76:0.474:2
chr13	95858996	rs2274406	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:31:38:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,5:30:5:1.00:2	0/1:48,39:32:87:0.448:2	./.	0/1:31,27:31:58:0.466:2	0/1:1,72:32:73:0.986:2	0/1:0,66:32:66:1.00:2	0/1:0,59:33:59:1.00:2	0/1:34,32:33:66:0.485:2	0/1:34,33:33:67:0.493:2
chr13	95859035	rs2274407	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,17:30:19:0.895:2	0/1:22,4:32:26:0.154:2	0/1:0,24:30:24:1.00:2	0/1:16,13:30:29:0.448:2	./.
chr13	95860141	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.	./.	./.	./.
chr13	95861804	rs899494	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,94:31:95:0.989:2	0/1:0,62:31:62:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,129:31:129:1.00:2	./.	0/1:53,70:30:123:0.569:2	0/1:2,119:31:121:0.983:2	0/1:0,129:31:129:1.00:2	0/1:0,123:31:123:1.00:2	0/1:0,91:31:91:1.00:2	0/1:58,70:31:128:0.547:2
chr13	96239805	rs11070136	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,32:32:83:0.386:2	0/1:18,13:32:31:0.419:2	./.	0/1:0,107:31:107:1.00:2	0/1:55,40:31:95:0.421:2	./.	./.	0/1:52,35:31:87:0.402:2	0/1:53,35:32:88:0.398:2	0/1:42,34:31:76:0.447:2	./.
chr13	96242564	rs34181737	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:32:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr13	96246312	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:35:74:0.054:2	./.	./.
chr13	96505874	rs35072323	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,21:31:36:0.583:2	./.	./.	./.	./.
chr13	96506596	rs45454901	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,59:30:115:0.513:2	./.	0/1:40,54:29:94:0.574:2	./.
chr13	96506664	rs11070154	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,82:32:84:0.976:2	0/1:0,38:32:38:1.00:2	./.	0/1:38,52:32:90:0.578:2	0/1:16,16:31:32:0.500:2	0/1:42,37:33:79:0.468:2	0/1:51,3:34:54:0.056:2	./.	0/1:1,74:33:75:0.987:2	0/1:41,32:33:73:0.438:2	./.
chr13	96529571	rs41315036	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,37:33:84:0.440:2	./.	0/1:27,28:33:55:0.509:2	./.
chr13	96530020	rs199906236	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,22:31:45:0.489:2	./.	./.	./.	./.
chr13	96540141	rs9525075	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:32:35:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,38:32:38:1.00:2	0/1:3,57:32:60:0.950:2	0/1:0,50:33:50:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,78:31:78:1.00:2
chr13	96540143	rs9525076	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:31:35:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,38:32:38:1.00:2	0/1:2,58:32:60:0.967:2	0/1:0,50:33:50:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,78:32:78:1.00:2
chr13	96540204	rs12876018	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,60:32:61:1.00:2	0/1:1,37:32:38:0.974:2	./.	0/1:62,35:32:97:0.361:2	./.	0/1:50,39:32:89:0.438:2	./.	./.	0/1:71,47:33:118:0.398:2	0/1:70,39:33:109:0.358:2	./.
chr13	96555149	rs33949518	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,22:31:39:0.564:2	./.	./.	./.	0/1:22,9:32:31:0.290:2	./.
chr13	96601679	rs35405829	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,26:30:69:0.377:2	./.	0/1:42,27:31:69:0.391:2	./.	0/1:95,57:32:152:0.375:2	./.	./.
chr13	96624836	rs35923904	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,31:33:64:0.484:2	./.	./.	./.	./.
chr13	96638636	rs816142	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:33:33:1.00:2	0/1:0,17:34:17:1.00:2	0/1:0,7:32:7:1.00:2	0/1:15,11:33:26:0.423:2	0/1:0,13:33:13:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,17:32:17:1.00:2	0/1:17,12:33:29:0.414:2	0/1:0,21:33:21:1.00:2	0/1:0,24:32:24:1.00:2	0/1:1,44:33:45:0.978:2
chr13	96638651	rs12863903	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,10:31:26:0.385:2	./.	./.	./.	0/1:15,7:29:22:0.318:2	./.
chr13	96651548	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr13	97639021	rs9584456	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,13:33:28:0.464:2	./.	./.	./.	./.
chr13	97639414	rs9284174	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,85:30:85:1.00:2	0/1:88,62:30:150:0.413:2	0/1:98,79:29:177:0.446:2	0/1:77,76:30:153:0.497:2	0/1:102,55:30:157:0.350:2	./.	./.
chr13	97639827	rs9300380	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,75:29:179:0.419:2	./.	./.	./.	./.
chr13	98645253	rs626716	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,58:33:102:0.569:2
chr13	98652797	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:34:141:0.028:2	./.	./.
chr13	98652834	rs202197617	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,22:23:78:0.282:2	./.	0/1:74,14:24:88:0.159:2	0/1:69,9:21:78:0.115:2	0/1:69,14:19:83:0.169:2	0/1:102,11:24:113:0.097:2	0/1:56,11:25:67:0.164:2	0/1:67,14:21:81:0.173:2
chr13	98667969	rs188444132	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,24:31:61:0.393:2	./.	./.	./.	./.	./.	./.
chr13	98671927	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:32:75:0.053:2	./.	./.
chr13	98829176	rs628778	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:28:43:1.00:2	0/1:0,17:26:17:1.00:2	0/1:0,6:30:6:1.00:2	0/1:31,15:28:47:0.326:2	0/1:0,39:27:39:1.00:2	0/1:0,55:26:55:1.00:2	0/1:0,29:28:29:1.00:2	0/1:0,53:26:53:1.00:2	0/1:1,29:28:30:0.967:2	0/1:0,19:26:19:1.00:2	0/1:0,15:25:15:1.00:2
chr13	98829217	rs16955011	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,11:31:15:0.733:2	./.	./.	./.	./.	./.	./.	./.
chr13	98896776	rs7318267	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:40,28:32:68:0.412:2	0/1:13,12:31:25:0.480:2	0/1:0,3:32:3:1.00:2	./.	./.	0/1:30,25:30:55:0.455:2	0/1:25,34:30:59:0.576:2	0/1:0,67:32:67:1.00:2	./.	0/1:14,25:31:39:0.641:2	./.
chr13	99017702	rs586538	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,27:33:96:0.284:2	./.	./.	./.	./.
chr13	99020363	rs45547431	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,7:32:10:0.700:2	./.	./.	./.	./.
chr13	99064244	rs11556829	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,47:32:84:0.560:2	./.	./.	./.	./.	0/1:47,44:33:91:0.484:2	./.	./.
chr13	99083321	rs61730892	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,14:31:26:0.538:2	0/1:11,13:30:24:0.542:2	./.	./.	./.	0/1:19,19:28:38:0.500:2	./.	./.	./.	./.	./.
chr13	99087849	rs200427694	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,43:32:78:0.551:2	./.	./.	./.	./.	./.
chr13	99088006	rs1792	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:44,27:31:71:0.380:2	0/1:29,22:32:51:0.431:2	./.	0/1:51,24:30:75:0.320:2	./.	0/1:46,29:30:75:0.387:2	./.	0/1:43,28:30:71:0.394:2	./.	0/1:0,54:31:54:1.00:2	./.
chr13	99088113	rs1998535	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:44,27:31:71:0.380:2	0/1:20,18:32:38:0.474:2	./.	0/1:25,42:31:67:0.627:2	./.	0/1:35,42:31:77:0.545:2	0/1:35,38:32:73:0.521:2	0/1:45,24:31:69:0.348:2	./.	0/1:0,69:32:69:1.00:2	./.
chr13	99091363	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:30:101:0.040:2	./.	./.
chr13	99100547	rs12261	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,83:32:174:0.477:2	0/1:56,48:32:104:0.462:2	0/1:13,18:33:31:0.581:2	0/1:0,179:33:179:1.00:2	./.	./.	0/1:113,78:33:191:0.408:2	./.	0/1:117,69:33:187:0.371:2	0/1:110,73:32:183:0.399:2	0/1:2,176:31:178:0.989:2
chr13	99105395	rs8481	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,9:31:9:1.00:2	./.	./.	./.	./.	./.	./.
chr13	99108729	rs41279124	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,8:32:30:0.267:2	./.	./.	./.	./.	./.	./.	0/1:18,9:33:27:0.333:2
chr13	99112680	rs4771305	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,41:31:42:0.976:2	0/1:0,22:32:22:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,64:31:64:1.00:2
chr13	99115962	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:29:95:0.042:2
chr13	99171577	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:166,6:33:172:0.035:2	./.	./.	./.	./.	./.	./.
chr13	99356612	rs1339067	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,25:29:37:0.676:2	0/1:0,185:30:185:1.00:2	0/1:102,92:28:194:0.474:2	0/1:1,184:29:186:0.995:2	0/1:1,186:29:187:0.995:2	0/1:89,97:29:186:0.522:2	0/1:0,182:30:182:1.00:2	0/1:122,70:30:192:0.365:2	0/1:95,86:29:181:0.475:2
chr13	99358401	rs4646227	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,29:31:66:0.439:2	./.	./.	./.	./.	./.	./.
chr13	99361031	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:32:68:0.059:2	./.	./.	./.
chr13	99376181	rs2297322	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,63:29:118:0.534:2	./.	0/1:105,58:30:163:0.356:2	./.	./.	./.	./.
chr13	99378513	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:33:115:0.035:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	99448441	rs9554522	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:67,40:32:107:0.374:2	0/1:38,51:33:89:0.573:2	0/1:15,3:33:18:0.167:2	0/1:0,127:31:127:1.00:2	0/1:67,61:31:128:0.477:2	0/1:80,77:32:157:0.490:2	./.	0/1:80,80:32:160:0.500:2	0/1:91,81:32:172:0.471:2	0/1:56,63:32:120:0.529:2	0/1:105,84:33:189:0.444:2
chr13	99457431	rs2296984	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:63,46:33:109:0.422:2	0/1:32,36:31:68:0.529:2	./.	0/1:2,98:32:100:0.980:2	0/1:37,38:31:75:0.507:2	0/1:58,59:32:117:0.504:2	./.	./.	0/1:48,61:33:109:0.560:2	0/1:38,49:32:87:0.563:2	./.
chr13	99461329	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:31:130:0.031:2	./.	./.	./.	./.	./.
chr13	99462477	rs12859979	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:18,18:31:36:0.500:2	0/1:17,11:32:28:0.393:2	./.	0/1:0,51:31:51:1.00:2	./.	0/1:22,30:31:52:0.577:2	./.	./.	./.	./.	./.
chr13	99483656	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:32:84:0.048:2	./.	./.	./.	./.
chr13	99533834	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,55:32:120:0.458:2	./.	./.	./.	./.
chr13	99533897	rs2296994	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,17:32:34:0.500:2	0/1:15,19:31:34:0.559:2	0/1:1,7:30:8:0.875:2	0/1:0,43:31:43:1.00:2	./.	0/1:43,28:30:71:0.394:2	./.	./.	0/1:33,36:32:69:0.522:2	./.	./.
chr13	99540394	rs3737021	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:8,10:32:18:0.556:2	0/1:2,11:31:13:0.846:2	./.	0/1:0,25:31:25:1.00:2	./.	0/1:9,5:30:14:0.357:2	./.	./.	0/1:21,12:31:33:0.364:2	./.	./.
chr13	99540395	rs1928104	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,10:28:18:0.556:2	0/1:2,11:28:13:0.846:2	./.	0/1:0,25:28:25:1.00:2	0/1:0,22:33:22:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,12:33:12:1.00:2	0/1:4,14:33:18:0.778:2	0/1:0,32:32:32:1.00:2	0/1:0,16:33:16:1.00:2	0/1:23,17:33:40:0.425:2
chr13	99540406	rs3737023	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:9,14:31:23:0.609:2	0/1:2,14:31:16:0.875:2	./.	0/1:0,35:32:35:1.00:2	./.	0/1:13,8:32:21:0.381:2	./.	./.	0/1:23,20:34:43:0.465:2	./.	./.
chr13	99550436	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,4:31:108:0.037:2	./.	./.	./.	./.	./.	./.	./.
chr13	99575568	rs12428661	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,21:31:42:0.500:2	0/1:15,15:32:30:0.500:2	0/1:2,5:32:7:0.714:2	0/1:0,52:31:52:1.00:2	./.	0/1:28,26:30:54:0.481:2	./.	./.	0/1:42,31:31:75:0.425:2	./.	0/1:29,29:31:60:0.500:2
chr13	99738554	rs117633128	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.
chr13	99853225	rs7332516	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,17:28:33:0.515:2	./.	0/1:15,13:30:28:0.464:2	./.
chr13	99853443	rs7338947	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,3:34:3:1.00:2	0/1:0,2:28:2:1.00:2	./.	0/1:0,6:28:6:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,6:28:6:1.00:2	0/1:0,5:28:5:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,2:30:2:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,2:29:2:1.00:2
chr13	99907341	rs3742130	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,48:30:109:0.440:2	./.	./.	./.	0/1:72,60:31:132:0.455:2	./.	0/1:74,55:31:129:0.426:2
chr13	99948097	rs2230343	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,19:28:66:0.288:2	./.	./.	./.	./.
chr13	99948178	rs2230342	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:113,66:30:179:0.369:2	0/1:52,45:30:97:0.464:2	0/1:89,73:30:162:0.451:2	0/1:54,59:30:113:0.522:2	./.	0/1:79,101:31:180:0.561:2	0/1:84,63:30:147:0.429:2	0/1:102,91:30:194:0.472:2
chr13	100206623	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:33:128:0.031:2	./.	./.	./.	./.	./.
chr13	100518580	rs3783185	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:29:44:1.00:2	0/1:0,41:28:41:1.00:2	0/1:0,6:29:6:1.00:2	0/1:51,41:29:92:0.446:2	0/1:0,50:27:50:1.00:2	0/1:0,59:28:59:1.00:2	0/1:42,24:29:66:0.364:2	0/1:1,82:29:83:0.988:2	0/1:44,46:30:90:0.511:2	0/1:1,56:28:57:0.982:2	0/1:0,80:28:80:1.00:2
chr13	100537232	rs912284	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,145:33:145:1.00:2	0/1:3,95:32:98:0.969:2	0/1:20,7:32:27:0.259:2	0/1:0,186:33:186:1.00:2	0/1:0,168:32:168:1.00:2	0/1:2,186:32:188:0.989:2	0/1:7,183:33:190:0.963:2	0/1:104,91:32:197:0.467:2	0/1:0,182:33:182:1.00:2	0/1:0,185:33:185:1.00:2	0/1:0,190:32:190:1.00:2
chr13	100543648	rs34411915	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,13:30:41:0.317:2	./.	./.	./.	./.
chr13	100623882	rs11619501	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,32:29:51:0.627:2	./.	./.	./.	0/1:49,39:31:88:0.443:2	./.	./.
chr13	100635377	rs1831992	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,6:32:15:0.400:2	0/1:10,3:30:13:0.231:2	./.	./.	./.	./.	./.	./.	0/1:15,14:30:29:0.483:2	./.	./.
chr13	100888122	rs538229	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,42:31:83:0.512:2	./.	./.	0/1:33,50:31:83:0.602:2	./.
chr13	100945533	rs9300598	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:32:62:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,89:32:89:1.00:2
chr13	101020733	rs61749895	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,42:32:94:0.447:2	0/1:38,25:32:63:0.397:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	101184455	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,15:32:25:0.600:2	./.	./.
chr13	101264749	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:33:121:0.033:2	./.	./.	./.
chr13	101287340	rs946837	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,89:31:89:1.00:2	0/1:43,38:31:81:0.469:2	0/1:59,42:31:101:0.416:2	./.	./.	0/1:51,43:32:94:0.457:2	0/1:51,35:31:86:0.407:2	0/1:56,33:32:89:0.371:2
chr13	101287365	rs946838	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,30:28:64:0.469:2	0/1:12,21:28:33:0.636:2	0/1:0,11:28:11:1.00:2	0/1:0,62:28:62:1.00:2	0/1:0,50:27:50:1.00:2	0/1:49,36:30:85:0.424:2	0/1:0,66:27:67:1.00:2	0/1:0,61:29:61:1.00:2	0/1:0,62:28:62:1.00:2	0/1:0,55:28:55:1.00:2	0/1:0,73:27:73:1.00:2
chr13	101287404	rs2297943	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:26,16:34:42:0.381:2	0/1:11,10:33:21:0.476:2	./.	./.	0/1:18,8:32:26:0.308:2	./.	0/1:19,13:32:32:0.406:2	0/1:11,26:32:37:0.703:2	0/1:20,13:33:33:0.394:2	0/1:11,17:32:28:0.607:2	0/1:18,24:32:42:0.571:2
chr13	101289836	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,25:30:51:0.490:2	./.	./.	./.	./.	./.	./.	./.
chr13	101308654	rs17579147	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,65:32:170:0.382:2	./.	./.	./.	./.
chr13	101315269	rs201804960	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,46:30:88:0.523:2	./.	./.	./.	./.	0/1:40,39:30:79:0.494:2
chr13	101320930	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.	./.	./.	./.
chr13	101322622	rs1283201	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,22:30:22:1.00:2	0/1:6,13:28:19:0.684:2	0/1:11,16:29:27:0.593:2	./.	./.	0/1:11,4:30:15:0.267:2	0/1:15,6:32:21:0.286:2	0/1:11,14:28:25:0.560:2
chr13	101720300	rs1289556	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:36,18:33:54:0.333:2	0/1:19,24:32:43:0.558:2	0/1:4,4:33:8:0.500:2	./.	./.	0/1:46,46:32:92:0.500:2	0/1:38,30:33:68:0.441:2	0/1:53,49:33:102:0.480:2	0/1:54,58:34:112:0.518:2	0/1:0,74:33:74:1.00:2	0/1:0,94:33:94:1.00:2
chr13	101733955	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:31:99:0.040:2	./.	./.	./.
chr13	101735211	rs17677552	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,23:32:48:0.479:2	0/1:20,11:32:31:0.355:2	0/1:2,3:32:5:0.600:2	0/1:0,65:32:65:1.00:2	0/1:41,33:32:74:0.446:2	0/1:54,29:32:83:0.349:2	./.	./.	./.	./.	./.
chr13	101736075	rs686141	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,21:33:22:0.955:2	0/1:0,14:32:14:1.00:2	0/1:0,9:34:9:1.00:2	0/1:0,39:33:39:1.00:2	0/1:17,11:32:28:0.393:2	0/1:0,22:31:22:1.00:2	0/1:13,10:33:23:0.435:2	0/1:19,28:33:47:0.596:2	0/1:27,15:33:42:0.357:2	0/1:0,21:32:21:1.00:2	0/1:2,23:29:25:0.920:2
chr13	101881777	rs3916906	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,22:32:22:1.00:2	0/1:0,20:32:20:1.00:2	./.	0/1:18,12:31:30:0.400:2	0/1:6,4:32:10:0.400:2	./.	0/1:1,17:32:18:0.944:2	0/1:14,7:32:21:0.333:2	./.	./.	./.
chr13	102227872	rs3916912	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,39:32:101:0.386:2	0/1:54,37:31:91:0.407:2	./.	./.	./.	0/1:42,37:33:79:0.468:2	./.	0/1:65,32:32:97:0.330:2
chr13	102366825	rs2281991	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,15:32:31:0.484:2	./.	./.	./.	./.	./.	0/1:104,88:34:193:0.458:2	./.	0/1:81,111:33:192:0.578:2
chr13	102367928	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,5:32:154:0.032:2	./.	./.	./.	./.
chr13	102375233	rs199536239	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:195,4:33:199:0.020:2	./.	./.	./.	./.	./.	./.
chr13	103275330	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:117,6:31:123:0.049:2	./.	./.	./.	./.	./.	./.	./.
chr13	103275386	rs2230854	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:32,34:28:66:0.515:2	0/1:20,20:29:40:0.500:2	./.	./.	./.	./.	0/1:30,33:29:63:0.524:2	./.	./.	0/1:31,36:30:67:0.537:2	0/1:82,28:30:110:0.255:2
chr13	103286390	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,5:28:190:0.026:2	./.	./.
chr13	103339365	rs660207	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:23,13:32:36:0.361:2	0/1:19,21:32:40:0.525:2	./.	./.	./.	./.	0/1:17,12:32:29:0.414:2	./.	./.	0/1:25,16:30:41:0.390:2	0/1:30,30:32:60:0.500:2
chr13	103346806	rs2390760	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,8:27:8:1.00:2	0/1:0,8:30:8:1.00:2	./.	0/1:0,4:30:4:1.00:2	0/1:0,4:30:4:1.00:2	./.	0/1:6,4:33:10:0.400:2	0/1:0,9:30:9:1.00:2	./.	./.	0/1:0,11:31:11:1.00:2
chr13	103382660	rs144153566	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,27:30:51:0.529:2	./.	./.	./.	./.	./.
chr13	103383417	rs9554897	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,15:33:15:1.00:2	0/1:87,53:33:140:0.379:2	./.	0/1:66,41:31:107:0.383:2	0/1:51,43:33:94:0.457:2	0/1:0,116:33:116:1.00:2	0/1:68,76:34:144:0.528:2	0/1:62,55:33:117:0.470:2	./.
chr13	103383728	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:33:50:0.080:2	./.
chr13	103384048	rs372262515	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,87:32:193:0.453:2
chr13	103384824	rs9300756	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,44:31:44:1.00:2	0/1:0,23:31:23:1.00:2	./.	0/1:17,16:31:33:0.485:2	0/1:0,36:31:36:1.00:2	0/1:20,17:31:37:0.459:2	0/1:16,15:31:31:0.484:2	./.	0/1:18,20:32:38:0.526:2	0/1:11,26:32:37:0.703:2	0/1:0,47:32:47:1.00:2
chr13	103385015	rs6491707	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,131:33:131:1.00:2	0/1:0,73:33:73:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,137:33:137:1.00:2	0/1:0,180:33:180:1.00:2	0/1:0,176:32:176:1.00:2	0/1:0,171:33:171:1.00:2	0/1:0,193:33:193:1.00:2	0/1:0,148:33:148:1.00:2	0/1:1,120:33:121:0.992:2	0/1:0,160:32:160:1.00:2
chr13	103385299	rs7335290	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,154:32:154:1.00:2	0/1:1,103:32:104:0.990:2	0/1:0,12:33:12:1.00:2	0/1:1,141:32:142:0.993:2	0/1:1,109:32:110:0.991:2	0/1:1,150:32:151:0.993:2	0/1:1,100:31:101:0.990:2	0/1:0,144:32:144:1.00:2	0/1:1,127:33:128:0.992:2	0/1:0,122:32:122:1.00:2	0/1:0,170:33:171:1.00:2
chr13	103385534	rs17592438	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,14:31:32:0.438:2	./.	./.	0/1:81,71:31:152:0.467:2	./.	0/1:78,102:32:180:0.567:2	./.	./.	./.
chr13	103385585	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,87:31:159:0.547:2	0/1:43,44:32:87:0.506:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	103385798	rs7983175	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:33:94:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,96:33:97:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,105:32:105:1.00:2	0/1:1,69:32:70:0.986:2	0/1:0,106:31:106:1.00:2	0/1:0,107:33:107:1.00:2	0/1:0,78:33:78:1.00:2	0/1:0,119:32:119:1.00:2
chr13	103386116	rs7982465	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,163:29:163:1.00:2	0/1:0,101:29:101:1.00:2	0/1:0,19:29:19:1.00:2	0/1:0,191:29:191:1.00:2	0/1:0,108:29:108:1.00:2	0/1:0,185:29:185:1.00:2	0/1:0,128:29:129:1.00:2	0/1:0,168:29:168:1.00:2	0/1:0,192:30:192:1.00:2	0/1:0,129:29:129:1.00:2	0/1:0,181:29:181:1.00:2
chr13	103386283	rs7982670	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,171:29:171:1.00:2	0/1:0,114:29:114:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,180:29:181:1.00:2	0/1:2,192:29:194:0.990:2	0/1:0,192:29:192:1.00:2	0/1:2,183:29:185:0.989:2	0/1:0,193:29:193:1.00:2	0/1:0,190:30:190:1.00:2	0/1:1,170:29:171:0.994:2	0/1:0,186:29:186:1.00:2
chr13	103388220	rs9300758	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:32:87:1.00:2	0/1:0,44:30:44:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,95:33:95:1.00:2	0/1:0,104:32:107:1.00:2	0/1:0,97:31:97:1.00:2
chr13	103388370	rs9518825	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,72:32:170:0.424:2	./.	./.	./.	./.	0/1:108,61:34:169:0.361:2	0/1:102,69:33:172:0.404:2	0/1:96,99:32:196:0.508:2
chr13	103388518	rs182913889	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,98:32:194:0.505:2	./.	./.	./.	./.
chr13	103388880	rs17592459	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,63:32:135:0.467:2	./.	./.	./.
chr13	103389885	rs77353067	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,70:32:148:0.476:2	./.	./.	./.
chr13	103390386	rs74471135	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,72:29:196:0.369:2	0/1:130,69:30:199:0.347:2	./.	./.	./.
chr13	103391605	rs17592480	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,23:33:72:0.319:2	0/1:19,24:33:43:0.558:2	./.	./.	./.
chr13	103391634	rs7322112	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,64:31:66:0.970:2	0/1:2,25:31:27:0.926:2	./.	0/1:18,27:31:45:0.600:2	0/1:0,48:30:48:1.00:2	0/1:3,49:30:52:0.942:2	0/1:1,44:31:45:0.978:2	0/1:0,35:30:35:1.00:2	0/1:33,26:30:59:0.441:2	0/1:20,21:31:41:0.512:2	0/1:45,35:31:81:0.438:2
chr13	103392127	rs74435572	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,16:32:34:0.471:2	0/1:25,17:32:42:0.405:2	./.	./.	./.
chr13	103392562	rs12585626	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,8:29:28:0.286:2	./.	./.	./.
chr13	103392681	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:33:84:0.048:2	./.	./.
chr13	103392709	rs79592880	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,15:30:51:0.294:2	0/1:54,30:31:84:0.357:2	./.	./.	./.
chr13	103394003	rs1449707	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,54:32:54:1.00:2	0/1:0,33:32:33:1.00:2	./.	0/1:25,24:31:49:0.490:2	0/1:0,37:31:37:1.00:2	0/1:0,54:31:54:1.00:2	0/1:1,36:30:37:0.973:2	0/1:0,34:31:34:1.00:2	0/1:39,21:32:60:0.350:2	0/1:28,21:31:49:0.429:2	0/1:43,33:31:76:0.434:2
chr13	103394239	rs16960471	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,75:32:153:0.490:2	./.	./.	./.
chr13	103394613	rs9585986	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,142:32:142:1.00:2	0/1:3,75:32:78:0.962:2	0/1:10,6:33:16:0.375:2	0/1:79,66:32:145:0.455:2	0/1:1,70:31:72:0.986:2	0/1:3,141:31:144:0.979:2	0/1:0,106:32:106:1.00:2	0/1:0,115:32:115:1.00:2	0/1:96,68:33:164:0.415:2	0/1:65,68:32:133:0.511:2	0/1:89,71:33:160:0.444:2
chr13	103394716	rs9585987	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,28:27:28:1.00:2	0/1:1,16:28:17:0.941:2	./.	0/1:20,11:27:31:0.355:2	0/1:0,24:27:24:1.00:2	0/1:0,32:28:32:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,25:28:25:1.00:2	0/1:19,14:26:33:0.424:2	0/1:17,19:29:36:0.528:2	0/1:22,15:26:37:0.405:2
chr13	103395018	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:33:118:0.034:2	./.	./.
chr13	103395769	rs117896704	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,86:30:190:0.453:2
chr13	103395819	rs1375720	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,142:31:142:1.00:2	0/1:0,114:31:114:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,140:31:140:1.00:2	0/1:2,97:30:99:0.980:2	0/1:0,170:31:170:1.00:2	0/1:0,108:31:108:1.00:2	0/1:0,153:30:153:1.00:2	0/1:0,164:32:164:1.00:2	0/1:0,142:31:142:1.00:2	0/1:0,163:32:163:1.00:2
chr13	103396227	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,15:32:35:0.429:2	./.	./.	./.
chr13	103396716	rs6491708	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,30:32:30:1.00:2	0/1:0,19:33:19:1.00:2	./.	0/1:18,14:33:32:0.438:2	0/1:0,25:32:25:1.00:2	0/1:0,25:33:25:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,15:31:15:1.00:2	0/1:22,16:32:38:0.421:2	0/1:5,9:33:14:0.643:2	0/1:23,15:33:38:0.395:2
chr13	103397387	rs7339187	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,24:32:51:0.471:2	./.	./.	./.
chr13	103397583	rs9582626	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,160:32:161:0.994:2	0/1:1,90:32:91:0.989:2	0/1:19,7:31:26:0.269:2	0/1:124,76:33:200:0.380:2	0/1:0,114:32:114:1.00:2	0/1:2,176:32:178:0.989:2	0/1:2,150:32:152:0.987:2	0/1:0,188:32:188:1.00:2	0/1:122,71:32:193:0.368:2	0/1:117,77:33:194:0.397:2	0/1:125,67:33:192:0.349:2
chr13	103397861	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,71:32:133:0.538:2	./.	./.	./.	./.	./.
chr13	103397890	rs75285783	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,44:31:97:0.454:2	0/1:66,41:31:107:0.383:2	./.	./.	./.
chr13	103397937	rs9300759	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,27:33:47:0.574:2	./.	./.	./.	./.	0/1:31,28:34:59:0.475:2	0/1:20,22:31:42:0.524:2	0/1:33,32:31:65:0.492:2
chr13	103399313	rs145707243	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,70:32:193:0.363:2	0/1:106,76:32:182:0.418:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	103399456	rs138353836	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,82:32:158:0.519:2	./.	./.	./.	./.	./.
chr13	103399837	rs58265842	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,8:29:21:0.381:2	0/1:16,14:31:30:0.467:2	./.	./.	./.
chr13	103400033	rs17592564	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,28:33:69:0.406:2	0/1:58,49:32:107:0.458:2	./.	./.	./.
chr13	103400083	rs1026158	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,144:30:146:0.986:2	0/1:0,92:31:92:1.00:2	0/1:10,8:30:18:0.444:2	0/1:76,61:30:137:0.445:2	0/1:1,108:29:109:0.991:2	0/1:1,113:30:114:0.991:2	0/1:43,57:30:100:0.570:2	./.	0/1:73,79:30:152:0.520:2	0/1:47,50:31:97:0.515:2	0/1:109,84:30:193:0.435:2
chr13	103400729	rs12583104	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,107:32:108:0.991:2	0/1:0,61:31:61:1.00:2	0/1:5,7:31:12:0.583:2	0/1:44,46:31:90:0.511:2	0/1:0,66:30:66:1.00:2	0/1:0,81:30:81:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,82:30:82:1.00:2	0/1:57,46:31:103:0.447:2	0/1:41,45:29:86:0.523:2	0/1:88,80:31:169:0.476:2
chr13	103401389	rs186865946	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,16:29:33:0.485:2	./.	./.	./.	./.	./.	./.
chr13	103402522	rs9300760	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,112:32:112:1.00:2	0/1:0,72:32:72:1.00:2	0/1:13,7:31:20:0.350:2	0/1:93,69:31:162:0.426:2	0/1:0,88:31:88:1.00:2	0/1:2,124:31:126:0.984:2	0/1:0,79:31:79:1.00:2	0/1:1,118:32:119:0.992:2	0/1:84,65:33:149:0.436:2	0/1:66,52:32:118:0.441:2	0/1:104,76:32:180:0.422:2
chr13	103410782	rs1375719	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:0,29:32:29:1.00:2	./.	0/1:20,17:33:37:0.459:2	0/1:0,29:32:29:1.00:2	0/1:20,13:32:33:0.394:2	0/1:25,6:32:31:0.194:2	./.	./.	./.	0/1:34,26:32:60:0.433:2
chr13	103410914	rs12855785	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,25:31:26:1.00:2	0/1:0,18:31:18:1.00:2	./.	0/1:14,6:30:20:0.300:2	0/1:0,17:29:17:1.00:2	0/1:16,8:29:24:0.333:2	./.	./.	./.	./.	0/1:20,16:29:36:0.444:2
chr13	103420680	rs1470654	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	0/1:21,15:31:36:0.417:2	0/1:37,9:31:46:0.196:2
chr13	103422350	rs118055120	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,11:31:34:0.324:2	./.	./.	./.	./.	./.	./.	./.
chr13	103449202	rs1047740	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,37:32:77:0.481:2	./.	./.	./.	0/1:35,37:32:72:0.514:2	./.	0/1:23,40:31:63:0.635:2	0/1:46,41:32:87:0.471:2
chr13	103450973	rs7994595	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,21:29:36:0.583:2	./.	./.	./.
chr13	103483991	rs34730033	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,24:32:48:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr13	103504517	rs1047768	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,55:31:55:1.00:2	0/1:0,22:30:22:1.00:2	./.	0/1:24,15:31:39:0.385:2	0/1:0,37:30:37:1.00:2	0/1:33,20:30:53:0.377:2	0/1:1,49:31:50:0.980:2	0/1:40,23:30:63:0.365:2	0/1:34,33:31:67:0.493:2	./.	0/1:41,43:30:84:0.512:2
chr13	103506686	rs4140390	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,27:33:64:0.422:2	./.	./.	./.	./.	./.	./.	./.
chr13	103513944	rs1047769	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,63:32:106:0.594:2	./.	./.	./.	./.	./.
chr13	103513951	rs4150313	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,60:29:138:0.438:2	./.	./.	./.	./.	./.	./.	./.
chr13	103514459	rs4150314	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,22:32:37:0.595:2	./.	./.	./.	./.
chr13	103520565	rs4150342	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,29:32:49:0.592:2	./.	./.	./.	./.
chr13	103525627	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:33:73:0.055:2	./.
chr13	103527849	rs9514066	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:30:52:1.00:2	0/1:0,35:28:35:1.00:2	0/1:0,8:28:8:1.00:2	0/1:0,49:29:49:1.00:2	0/1:0,47:28:47:1.00:2	0/1:0,57:29:57:1.00:2	0/1:0,56:29:56:1.00:2	0/1:0,49:29:49:1.00:2	0/1:0,64:30:64:1.00:2	0/1:0,54:29:54:1.00:2	0/1:0,49:28:49:1.00:2
chr13	103527930	rs9514067	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:30:43:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,44:29:44:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,45:30:45:1.00:2	0/1:1,55:31:56:0.982:2	0/1:0,31:30:31:1.00:2	0/1:0,50:30:51:1.00:2
chr13	103528002	rs17655	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,7:32:9:0.778:2	./.	./.	0/1:36,28:31:64:0.438:2	./.	0/1:38,32:33:70:0.457:2	0/1:43,40:33:83:0.482:2	0/1:28,32:33:60:0.533:2	0/1:33,35:32:68:0.515:2
chr13	103701690	rs56398830	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,48:32:101:0.475:2	0/1:55,71:32:127:0.563:2	./.	./.	./.	./.	0/1:38,52:32:90:0.578:2	./.
chr13	103701743	rs182021361	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,6:31:17:0.353:2	./.	./.	./.	./.	./.	./.	./.	./.
chr13	103705044	rs188096	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,127:33:127:1.00:2	0/1:0,91:33:91:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,121:33:121:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,113:33:113:1.00:2	0/1:49,54:33:103:0.524:2	0/1:0,108:33:108:1.00:2	0/1:0,112:34:112:1.00:2	0/1:0,101:33:101:1.00:2	./.
chr13	103705050	rs41281678	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,53:31:109:0.486:2	./.	./.	./.	./.	./.
chr13	103718308	rs55971546	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,19:32:54:0.352:2	./.	./.	./.	./.	./.
chr13	106118612	rs45476401	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,42:32:88:0.477:2	./.	./.	./.	./.	./.
chr13	106119446	rs2391191	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:33:13:0.462:2	0/1:7,4:33:11:0.364:2	./.	./.	./.	0/1:11,9:32:20:0.450:2	./.	./.	./.	./.	0/1:14,18:33:32:0.563:2
chr13	106142193	rs72549490	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,30:33:76:0.395:2
chr13	106142235	rs778294	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:32:8:0.750:2	./.	0/1:42,47:32:89:0.528:2	./.	./.	./.	0/1:57,33:34:90:0.367:2	./.	./.
chr13	107145463	rs7995379	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:31:37:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,66:30:66:1.00:2
chr13	107145610	rs41275060	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,12:29:21:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr13	107863003	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:30:65:0.062:2	./.	./.	./.	./.
chr13	107863032	rs147212926	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,30:31:63:0.476:2	./.	./.	./.	./.	./.	./.
chr13	108518444	rs1771137	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,25:29:39:0.641:2	./.	./.	./.	./.	./.	./.
chr13	108861913	rs1805386	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,58:31:122:0.475:2	./.	./.	./.	0/1:1,125:33:126:0.992:2	./.
chr13	108862103	rs138366433	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:31:63:0.063:2	./.	./.	./.
chr13	108863591	rs1805388	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,7:30:19:0.368:2	./.	0/1:0,60:32:60:1.00:2	./.	./.
chr13	108863609	rs1805389	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,5:31:14:0.357:2	./.	0/1:16,17:32:33:0.515:2	./.	./.
chr13	108882050	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,3:32:29:0.103:2	./.
chr13	108882193	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,4:31:100:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr13	108883548	rs41315042	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,15:30:28:0.536:2	./.	./.	./.	./.	./.	./.	./.
chr13	108885156	rs55665720	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,12:30:21:0.571:2	./.	./.	./.	0/1:0,21:33:21:1.00:2	./.
chr13	108885678	rs35286748	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,10:32:31:0.323:2	./.	./.	./.	./.
chr13	108885901	rs17464594	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,15:31:22:0.682:2	./.	./.	./.	0/1:0,22:33:22:1.00:2	./.
chr13	108885972	rs2148429	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,11:32:33:0.333:2	./.	./.
chr13	108886022	rs12585558	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:31:8:0.625:2	./.	./.	./.	./.	./.	./.	./.
chr13	108886062	rs187413323	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,12:33:28:0.429:2	./.	./.	./.	./.	./.	./.	./.
chr13	109438084	rs911973	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,9:32:19:0.474:2	./.	./.	./.	./.	./.
chr13	109459038	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:145,9:33:154:0.058:2	./.	./.	./.	./.	./.	./.
chr13	109496813	rs16973313	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:22,25:29:47:0.532:2	0/1:8,5:29:13:0.385:2	./.	0/1:31,36:29:67:0.537:2	./.	0/1:40,26:28:66:0.394:2	./.	./.	0/1:29,29:31:58:0.500:2	./.	./.
chr13	109518578	rs9559428	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,30:32:73:0.411:2	./.	0/1:31,37:33:68:0.544:2	./.	./.	0/1:46,43:33:89:0.483:2	./.
chr13	109535442	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:31:109:0.037:2	./.	./.	./.	./.	./.
chr13	109550367	rs76952704	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,60:31:113:0.531:2
chr13	109661359	rs3825491	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	./.	./.	./.	./.	0/1:36,32:33:68:0.471:2	0/1:30,28:32:58:0.483:2	./.
chr13	109707451	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr13	109707827	rs9521141	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,11:31:17:0.647:2	./.	0/1:40,30:30:70:0.429:2	0/1:65,49:32:114:0.430:2	./.	./.	./.	./.	./.
chr13	109777503	rs157024	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:34:12:0.583:2	./.	0/1:90,81:33:171:0.474:2	./.	./.	./.	./.	./.	./.
chr13	109792889	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.
chr13	109793177	rs150813880	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,6:31:18:0.333:2	./.
chr13	109793246	rs80260507	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,13:33:26:0.500:2	0/1:8,8:31:16:0.500:2	./.	./.	./.
chr13	109793474	rs28705148	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:30:22:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,32:31:32:1.00:2	0/1:4,32:32:36:0.889:2	0/1:0,39:31:39:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,27:32:27:1.00:2
chr13	109793720	rs7986595	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:29:19:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,33:28:33:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,21:28:21:1.00:2	0/1:0,29:28:29:1.00:2	0/1:0,23:29:23:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,17:27:17:1.00:2
chr13	109831917	rs188457804	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,54:32:121:0.446:2	./.	./.	./.
chr13	110408608	rs1865434	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,16:32:35:0.457:2	0/1:5,5:32:10:0.500:2	0/1:2,6:31:8:0.750:2	0/1:0,30:31:30:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,26:31:26:1.00:2	0/1:12,19:31:31:0.613:2	0/1:0,31:33:31:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,22:33:22:1.00:2
chr13	110435231	rs1805097	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,6:28:7:0.857:2	./.	0/1:6,7:28:13:0.538:2	0/1:0,4:31:4:1.00:2	./.	0/1:2,7:27:9:0.778:2
chr13	110435914	rs12853546	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:4,3:31:7:0.429:2	0/1:4,6:30:10:0.600:2	./.	0/1:11,13:27:24:0.542:2	./.	./.	0/1:18,18:28:36:0.500:2	./.	./.	./.	./.
chr13	110435953	rs4773092	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,9:31:30:0.300:2	0/1:18,11:29:29:0.379:2	0/1:26,13:29:39:0.333:2	0/1:26,21:29:47:0.447:2	0/1:1,25:30:26:0.962:2	0/1:0,17:31:17:1.00:2	0/1:0,17:31:17:1.00:2	0/1:7,6:30:13:0.462:2
chr13	110436232	rs3742210	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:29:14:0.571:2	0/1:4,3:29:7:0.429:2	0/1:5,4:29:9:0.444:2	0/1:0,6:27:6:1.00:2	0/1:0,12:28:12:1.00:2	0/1:1,9:29:10:0.900:2	0/1:0,8:26:8:1.00:2	0/1:3,5:27:8:0.625:2
chr13	110437802	rs199639786	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,14:15:74:0.189:2	./.	./.	./.	./.	./.
chr13	110804809	rs650724	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:40,21:32:62:0.344:2	0/1:15,15:32:30:0.500:2	./.	./.	./.	./.	./.	0/1:48,27:32:75:0.360:2	0/1:17,48:32:65:0.738:2	./.	./.
chr13	110813709	rs1133219	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:30:9:1.00:2	./.	./.	./.	./.	./.	0/1:33,28:32:61:0.459:2	./.	./.
chr13	110818598	rs3742207	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,15:30:15:1.00:2	./.	./.	0/1:90,70:29:160:0.438:2	0/1:85,62:29:147:0.422:2	./.	0/1:93,100:30:193:0.518:2	0/1:103,50:30:153:0.327:2	./.
chr13	110819586	rs589985	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:31:39:1.00:2	0/1:0,30:32:30:1.00:2	0/1:3,3:32:6:0.500:2	0/1:1,34:31:35:0.971:2	0/1:0,33:31:33:1.00:2	0/1:15,13:30:28:0.464:2	0/1:25,17:32:42:0.405:2	0/1:1,34:31:35:0.971:2	0/1:27,32:32:59:0.542:2	0/1:30,10:32:40:0.250:2	0/1:0,55:31:55:1.00:2
chr13	110827079	rs188620231	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,27:33:46:0.587:2	./.	./.	./.	./.	./.	./.	./.
chr13	110827574	rs874203	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:74,39:31:113:0.345:2	0/1:72,60:31:132:0.455:2	0/1:71,45:31:116:0.388:2	0/1:76,51:32:127:0.402:2	0/1:53,63:32:116:0.543:2	./.	./.
chr13	110827580	rs874204	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,42:31:130:0.323:2	0/1:79,67:30:146:0.459:2	0/1:74,47:32:121:0.388:2	0/1:83,55:31:138:0.399:2	0/1:59,65:31:124:0.524:2	./.	./.
chr13	110830236	rs139859950	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,19:32:26:0.731:2
chr13	110833702	rs16975492	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,23:31:55:0.418:2	0/1:23,29:30:52:0.558:2	0/1:34,37:32:71:0.521:2	0/1:49,38:32:87:0.437:2	0/1:24,43:33:67:0.642:2	./.	./.
chr13	110838814	rs61749897	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,20:30:40:0.500:2	./.	./.	./.	./.
chr13	110839550	rs536174	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:32:54:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,5:27:5:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,54:33:54:1.00:2	0/1:0,55:33:55:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,49:31:49:1.00:2
chr13	110850842	rs995224	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,10:32:27:0.370:2	./.	0/1:14,11:29:25:0.440:2	0/1:29,16:29:45:0.356:2	0/1:18,21:30:39:0.538:2	./.	./.
chr13	110857823	rs482757	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,62:31:64:0.969:2	0/1:0,37:31:37:1.00:2	0/1:0,15:31:15:1.00:2	0/1:1,61:31:62:0.984:2	0/1:26,15:31:41:0.366:2	0/1:0,72:30:72:1.00:2	./.	0/1:51,34:31:85:0.400:2	0/1:0,65:32:65:1.00:2	0/1:0,67:31:67:1.00:2	0/1:1,88:31:89:0.989:2
chr13	110857895	rs677877	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,39:32:40:0.975:2	0/1:0,23:32:23:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,39:34:39:1.00:2	0/1:11,16:32:27:0.593:2	0/1:0,47:32:47:1.00:2	./.	0/1:19,17:32:36:0.472:2	0/1:0,36:33:36:1.00:2	0/1:1,31:33:32:0.969:2	0/1:3,68:33:71:0.958:2
chr13	110859069	rs9588116	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,17:29:30:0.567:2	./.	0/1:0,17:29:17:1.00:2	0/1:9,14:29:23:0.609:2	./.	./.	./.
chr13	110859743	rs598893	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,97:32:97:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,94:31:94:1.00:2	0/1:56,36:30:92:0.391:2	0/1:1,97:31:98:0.990:2	./.	0/1:64,67:31:131:0.511:2	0/1:0,133:32:133:1.00:2	0/1:2,114:31:117:0.983:2	0/1:0,123:32:123:1.00:2
chr13	110861785	rs645114	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:33:56:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,4:34:4:1.00:2	0/1:0,42:32:43:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,29:33:29:1.00:2	0/1:26,34:33:60:0.567:2	0/1:61,42:32:103:0.408:2	0/1:37,29:33:66:0.439:2	0/1:0,106:32:106:1.00:2
chr13	110864225	rs532625	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:32:55:1.00:2	0/1:2,43:33:45:0.956:2	0/1:0,10:32:10:1.00:2	0/1:0,45:32:45:1.00:2	0/1:36,19:32:55:0.345:2	0/1:0,50:32:50:1.00:2	./.	./.	0/1:45,30:33:75:0.400:2	0/1:30,24:32:54:0.444:2	0/1:0,68:32:68:1.00:2
chr13	110895092	rs41275104	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,6:32:13:0.462:2	0/1:8,6:33:14:0.429:2	./.	./.	./.	./.	./.	./.	0/1:6,14:34:20:0.700:2	./.	./.
chr13	111077197	rs4238272	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,15:33:36:0.417:2	0/1:7,7:31:14:0.500:2	0/1:0,8:32:8:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,20:32:20:1.00:2	0/1:23,25:32:48:0.521:2	0/1:0,36:32:36:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,40:32:40:1.00:2
chr13	111098226	rs4103	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:31,34:31:65:0.523:2	0/1:9,13:32:22:0.591:2	./.	./.	0/1:43,42:31:85:0.494:2	0/1:41,43:30:84:0.512:2	0/1:0,80:30:80:1.00:2	0/1:0,77:31:77:1.00:2	./.	0/1:0,66:31:66:1.00:2	./.
chr13	111102042	rs76425569	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,19:31:38:0.500:2	0/1:14,27:32:41:0.659:2	0/1:20,26:32:46:0.565:2	0/1:32,18:32:50:0.360:2	./.	0/1:38,12:33:50:0.240:2	./.
chr13	111102126	rs74941798	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,3:32:5:0.600:2	0/1:1,4:34:5:0.800:2	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.
chr13	111109129	rs113122708	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,25:31:59:0.424:2	0/1:12,12:31:24:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	111109157	rs28502737	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,25:31:49:0.510:2	0/1:9,10:29:19:0.526:2	0/1:0,8:31:8:1.00:2	0/1:0,51:30:52:1.00:2	0/1:3,79:30:82:0.963:2	0/1:1,75:30:76:0.987:2	0/1:27,47:31:74:0.635:2	0/1:37,29:31:66:0.439:2	0/1:2,50:31:52:0.962:2	0/1:19,23:31:42:0.548:2	0/1:28,29:31:57:0.509:2
chr13	111109576	rs9521780	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,2:31:2:1.00:2	./.	./.	0/1:0,3:32:3:1.00:2	./.	0/1:0,2:34:2:1.00:2	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.
chr13	111109618	rs9515216	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,3:33:6:0.500:2	./.	./.	0/1:1,16:32:17:0.941:2	0/1:0,5:32:5:1.00:2	0/1:0,4:32:4:1.00:2	0/1:4,4:33:8:0.500:2	0/1:13,3:31:16:0.188:2	0/1:0,5:33:5:1.00:2	./.	0/1:3,4:33:7:0.571:2
chr13	111109643	rs112389576	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,4:32:10:0.400:2	0/1:6,6:32:12:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	111109670	rs9515217	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,22:33:34:0.647:2	0/1:10,9:33:19:0.474:2	0/1:7,10:31:17:0.588:2	./.	./.	0/1:19,15:34:34:0.441:2	./.	./.
chr13	111109859	rs9515218	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:68,46:27:114:0.404:2	0/1:30,28:29:58:0.483:2	0/1:0,16:29:16:1.00:2	0/1:1,142:28:143:0.993:2	0/1:9,127:27:136:0.934:2	0/1:0,115:28:115:1.00:2	0/1:124,57:27:181:0.315:2	0/1:113,82:27:195:0.421:2	0/1:0,87:28:87:1.00:2	0/1:72,64:28:136:0.471:2	0/1:63,55:27:118:0.466:2
chr13	111109882	rs9555703	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,77:28:156:0.494:2	0/1:78,58:29:136:0.426:2	0/1:132,60:29:192:0.313:2	0/1:112,76:29:188:0.404:2	./.	0/1:73,74:29:147:0.503:2	./.
chr13	111111173	rs7990214	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,20:32:48:0.417:2	0/1:25,20:32:45:0.444:2	0/1:0,9:32:9:1.00:2	0/1:2,66:32:68:0.971:2	0/1:0,90:32:90:1.00:2	0/1:0,76:32:76:1.00:2	0/1:44,54:33:98:0.551:2	0/1:44,58:32:102:0.569:2	0/1:0,85:33:85:1.00:2	0/1:37,28:32:65:0.431:2	0/1:30,28:33:58:0.483:2
chr13	111111235	rs7990383	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,12:31:27:0.444:2	0/1:11,16:32:27:0.593:2	0/1:0,5:30:5:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,33:30:33:1.00:2	0/1:18,17:29:35:0.486:2	0/1:19,26:30:45:0.578:2	0/1:0,40:32:40:1.00:2	0/1:23,21:30:44:0.477:2	0/1:26,15:31:41:0.366:2
chr13	111114519	rs112262533	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,18:31:51:0.353:2	0/1:23,14:33:37:0.378:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	111118366	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:31:160:0.025:2	./.
chr13	111119396	rs3803230	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,42:33:86:0.488:2	0/1:50,36:33:86:0.419:2	0/1:70,48:31:118:0.407:2	./.	./.	0/1:64,30:34:94:0.319:2	./.	./.
chr13	111121620	rs9583500	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:29:6:1.00:2	0/1:23,34:31:57:0.596:2	./.	./.	./.	./.	0/1:46,53:31:100:0.535:2	./.	0/1:47,36:30:83:0.434:2
chr13	111145633	rs2274544	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,11:30:20:0.550:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	111154058	rs439831	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:32:44:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,4:32:4:1.00:2	0/1:1,76:32:77:0.987:2	0/1:0,36:32:36:1.00:2	0/1:0,76:31:76:1.00:2	0/1:1,43:32:44:0.977:2	0/1:0,57:32:57:1.00:2	0/1:0,70:33:70:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,59:32:59:1.00:2
chr13	111154061	rs409858	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:32:44:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,76:33:76:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,43:32:44:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,70:34:70:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,61:32:61:1.00:2
chr13	111155773	rs438758	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:31:49:1.00:2	0/1:0,44:29:44:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,85:30:85:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,55:29:55:1.00:2	0/1:0,49:28:49:1.00:2	0/1:0,67:29:67:1.00:2	0/1:0,59:28:59:1.00:2	0/1:0,45:28:45:1.00:2	0/1:0,56:29:56:1.00:2
chr13	111155779	rs4773199	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:23,25:32:48:0.521:2	0/1:16,23:32:39:0.590:2	0/1:0,14:31:14:1.00:2	./.	0/1:22,15:32:37:0.405:2	0/1:31,21:31:52:0.404:2	./.	./.	0/1:0,54:32:54:1.00:2	0/1:18,25:32:43:0.581:2	0/1:18,41:32:59:0.695:2
chr13	111156499	rs4771683	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,10:32:10:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,37:30:37:1.00:2
chr13	111158874	rs445348	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,105:29:105:1.00:2	0/1:0,53:28:53:1.00:2	0/1:0,13:29:13:1.00:2	0/1:0,188:28:188:1.00:2	0/1:2,188:28:190:0.989:2	0/1:0,189:29:189:1.00:2	0/1:0,189:28:189:1.00:2	0/1:2,189:28:191:0.990:2	0/1:0,174:30:175:1.00:2	0/1:3,148:29:151:0.980:2	0/1:0,137:28:137:1.00:2
chr13	111160304	rs391859	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,64:31:127:0.504:2	./.	./.	./.	0/1:91,92:31:183:0.503:2	./.	./.	./.
chr13	111160482	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:36:181:0.022:2
chr13	111164389	rs199702442	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,7:17:54:0.130:2
chr13	111176316	rs426453	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,23:33:41:0.590:2	0/1:18,22:31:40:0.550:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	111176393	rs419244	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:30:31:1.00:2	0/1:1,26:30:27:0.963:2	0/1:1,5:31:6:0.833:2	0/1:2,57:31:59:0.966:2	0/1:26,33:30:59:0.559:2	0/1:22,29:30:51:0.569:2	0/1:0,78:31:78:1.00:2	0/1:0,59:30:59:1.00:2	./.	0/1:14,23:29:37:0.622:2	0/1:0,31:31:31:1.00:2
chr13	111176519	rs375814	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:4,4:31:9:0.500:2	./.	./.	0/1:7,8:31:15:0.533:2	./.	./.	0/1:4,3:27:7:0.429:2	0/1:2,10:32:12:0.833:2	./.	./.	0/1:4,4:32:8:0.500:2
chr13	111213822	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:33:168:0.024:2	./.	./.	./.	./.
chr13	111279817	rs3742191	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,69:32:138:0.500:2	./.	./.	0/1:95,89:33:184:0.484:2	./.	./.	./.
chr13	111290628	rs41275124	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,25:31:61:0.410:2	./.	./.	0/1:49,38:34:87:0.437:2	./.	./.
chr13	111290630	rs41275126	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,50:31:89:0.562:2	./.	0/1:0,60:32:60:1.00:2	./.	./.	0/1:48,38:33:86:0.442:2	./.	0/1:44,43:32:87:0.494:2
chr13	111293915	rs1043886	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,56:33:148:0.378:2	./.	0/1:0,160:33:160:1.00:2	./.	./.	0/1:80,74:34:154:0.481:2	./.	0/1:81,74:33:155:0.477:2
chr13	111298392	rs436462	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,54:31:108:0.500:2	0/1:27,36:32:63:0.571:2	./.	0/1:31,47:31:78:0.603:2	0/1:43,26:34:69:0.377:2	./.	./.
chr13	111319754	rs4628819	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,128:33:128:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,142:33:142:1.00:2	0/1:51,84:32:135:0.622:2	0/1:0,143:32:143:1.00:2	0/1:0,111:33:111:1.00:2	0/1:0,150:33:150:1.00:2	0/1:0,164:34:164:1.00:2	0/1:1,91:33:92:0.989:2	0/1:0,135:32:135:1.00:2
chr13	111329422	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,13:31:34:0.382:2	./.	./.	./.	./.	./.	./.	./.
chr13	111340101	rs72661692	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,8:32:29:0.276:2	./.	0/1:21,17:32:38:0.447:2	0/1:18,13:32:31:0.419:2
chr13	111340342	rs2304767	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,47:31:49:0.959:2	./.	0/1:23,19:31:42:0.452:2	0/1:0,40:31:41:1.00:2	0/1:36,30:32:66:0.455:2	0/1:28,22:33:50:0.440:2	0/1:18,21:32:39:0.538:2	./.
chr13	111368164	rs7338333	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,3:30:3:1.00:2	./.	0/1:0,2:30:2:1.00:2	0/1:0,2:31:2:1.00:2	./.	0/1:0,4:20:4:1.00:2	./.	./.	0/1:0,3:28:3:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,3:23:3:1.00:2
chr13	111368316	rs9555726	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:30:3:1.00:2	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.
chr13	111372392	rs4773242	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:31:33:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,59:33:59:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,56:32:56:1.00:2
chr13	111373112	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,4:27:39:0.103:2
chr13	111373368	rs1061386	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,83:33:84:0.988:2	0/1:0,44:32:44:1.00:2	0/1:2,10:33:12:0.833:2	0/1:1,86:32:87:0.989:2	0/1:0,56:32:56:1.00:2	0/1:35,47:32:82:0.573:2	0/1:33,32:33:65:0.492:2	0/1:38,42:32:80:0.525:2	0/1:49,30:32:79:0.380:2	./.	./.
chr13	111373409	rs186706449	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,39:33:84:0.464:2	./.	./.	./.
chr13	111558447	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,3:31:21:0.143:2	./.
chr13	111562999	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:32:186:0.022:2	./.	./.	./.
chr13	111806245	rs61966721	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,9:32:14:0.643:2	0/1:6,12:32:18:0.667:2	0/1:0,19:32:19:1.00:2	./.	0/1:0,12:32:12:1.00:2	./.	0/1:0,7:32:7:1.00:2	./.
chr13	111870037	rs2296354	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,73:32:158:0.462:2	0/1:76,39:32:115:0.339:2	./.	./.	0/1:3,169:32:172:0.983:2	./.	0/1:82,64:32:146:0.438:2	./.
chr13	111953802	rs79303027	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,15:31:36:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.
chr13	111980537	rs1359428	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:98,55:32:153:0.359:2	0/1:50,46:31:96:0.479:2	./.	./.	0/1:1,164:31:165:0.994:2	0/1:109,76:31:185:0.411:2	0/1:106,79:31:186:0.427:2	0/1:2,180:32:182:0.989:2	./.	0/1:64,83:33:147:0.565:2	0/1:103,80:32:183:0.437:2
chr13	111992288	rs2253707	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,9:31:46:0.196:2	0/1:40,7:31:47:0.149:2	./.	0/1:42,20:32:62:0.323:2	./.	./.	./.	./.
chr13	112324789	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:33:40:0.100:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	112722128	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,3:31:23:0.130:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,4:33:19:0.211:2
chr13	112722140	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,3:31:33:0.091:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	112722225	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:31:134:0.030:2	./.	./.	./.	./.	./.
chr13	112722387	rs139160172	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:30:10:0.300:2	0/1:3,4:32:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	112723232	rs1056121	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:33:5:0.600:2	./.	./.	./.	0/1:1,3:31:4:0.750:2	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2
chr13	112723770	rs76810115	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,6:32:11:0.545:2	./.	./.	./.
chr13	112723942	rs76603777	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,25:31:68:0.368:2	0/1:20,7:31:27:0.259:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	112725196	rs3742223	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:33:11:0.455:2	0/1:5,6:32:11:0.545:2	0/1:0,4:32:4:1.00:2	./.	./.	./.	./.	0/1:0,8:34:8:1.00:2
chr13	112725791	rs571564	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,18:31:52:0.346:2	0/1:12,14:31:26:0.538:2	./.	0/1:31,9:31:40:0.225:2	0/1:23,11:32:34:0.324:2	0/1:0,39:31:39:1.00:2	0/1:0,14:31:14:1.00:2	0/1:21,15:31:36:0.417:2	0/1:0,19:32:19:1.00:2	0/1:15,14:33:29:0.483:2	0/1:0,45:32:45:1.00:2
chr13	113030773	rs80048274	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,18:32:35:0.514:2	./.	./.	./.	./.	./.	./.
chr13	113033010	rs76491939	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,39:32:71:0.549:2	./.	./.	./.	0/1:14,26:32:40:0.650:2	./.
chr13	113052356	rs147227871	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,7:31:17:0.412:2	0/1:24,15:31:39:0.385:2	./.	./.	./.	./.	./.
chr13	113052388	rs2296895	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,4:32:57:0.070:2	./.	0/1:0,12:33:12:1.00:2	0/1:0,67:33:67:1.00:2	0/1:15,14:33:29:0.483:2	0/1:25,25:32:50:0.500:2	0/1:0,42:32:42:1.00:2	0/1:0,72:33:72:1.00:2	0/1:29,30:33:59:0.508:2	0/1:28,29:33:57:0.509:2	0/1:0,66:32:66:1.00:2
chr13	113052433	rs200600447	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:32:77:0.052:2	./.
chr13	113052449	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:32:72:0.056:2	./.
chr13	113053470	rs10816	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,41:32:81:0.506:2	0/1:20,27:31:47:0.574:2	0/1:0,9:31:9:1.00:2	0/1:1,56:32:57:0.982:2	./.	./.	0/1:0,57:32:57:1.00:2	0/1:1,60:32:61:0.984:2	0/1:55,56:32:111:0.505:2	0/1:25,27:32:52:0.519:2	0/1:0,103:32:103:1.00:2
chr13	113158404	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.	./.	./.
chr13	113210444	rs76683650	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:72,7:20:79:0.089:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,10:20:75:0.133:2	./.
chr13	113223508	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:31:142:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	113333697	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,8:33:46:0.174:2
chr13	113333719	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,4:32:29:0.138:2	./.	./.	./.	./.	./.	./.	./.
chr13	113333809	rs114091399	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,17:32:31:0.548:2	./.
chr13	113333878	rs200954527	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,9:28:56:0.161:2	0/1:63,5:24:68:0.074:2	0/1:42,5:23:47:0.106:2	./.	0/1:56,9:20:65:0.138:2	./.	./.	./.
chr13	113439493	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,3:35:75:0.040:2
chr13	113439495	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:31:53:0.075:2	./.	./.	./.	./.
chr13	113473681	rs183829464	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,22:29:58:0.379:2	./.	./.	./.	./.	./.	./.	./.
chr13	113478652	rs59517603	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:32:71:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	113478654	rs7323586	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:49,23:33:72:0.319:2	0/1:17,23:32:40:0.575:2	./.	0/1:38,20:32:58:0.345:2	./.	0/1:40,42:32:82:0.512:2	./.	./.	./.	./.	0/1:39,41:33:80:0.513:2
chr13	113479813	rs9549564	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,75:31:149:0.507:2	0/1:59,42:32:101:0.416:2	0/1:16,6:30:22:0.273:2	0/1:81,54:30:135:0.400:2	./.	0/1:84,57:30:141:0.404:2	./.	./.	./.	./.	0/1:74,62:31:136:0.456:2
chr13	113479820	rs368865	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,136:30:136:1.00:2	0/1:0,96:29:96:1.00:2	0/1:0,20:31:20:1.00:2	0/1:81,58:30:139:0.417:2	0/1:1,129:29:130:0.992:2	0/1:1,135:29:136:0.993:2	0/1:77,69:30:146:0.473:2	0/1:0,170:29:170:1.00:2	0/1:95,82:31:177:0.463:2	0/1:82,51:30:133:0.383:2	0/1:0,138:30:138:1.00:2
chr13	113485850	rs61741250	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,4:29:24:0.167:2	./.	./.	./.	0/1:120,72:31:192:0.375:2	./.	./.	./.	./.
chr13	113488930	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:34:96:0.042:2	./.	./.
chr13	113508839	rs9549573	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,8:31:17:0.471:2	0/1:7,5:32:12:0.417:2	0/1:0,2:34:2:1.00:2	0/1:20,10:33:30:0.333:2	0/1:22,11:30:33:0.333:2	0/1:11,13:31:24:0.542:2	0/1:8,10:32:18:0.556:2	0/1:11,14:31:25:0.560:2	./.	0/1:10,4:32:14:0.286:2	0/1:6,4:30:10:0.400:2
chr13	113514616	rs61746637	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,9:31:29:0.310:2	./.	./.	./.	0/1:121,74:32:195:0.379:2	./.	./.	0/1:94,57:32:152:0.377:2	./.
chr13	113514699	rs202237194	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:144,19:33:163:0.117:2	./.	./.	./.	./.	./.	./.
chr13	113527967	rs1320525	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:67,66:31:133:0.496:2	0/1:49,24:30:73:0.329:2	0/1:0,20:31:20:1.00:2	0/1:81,54:30:135:0.400:2	0/1:50,37:31:87:0.425:2	0/1:72,46:30:119:0.390:2	0/1:67,33:31:100:0.330:2	0/1:72,55:31:127:0.433:2	./.	0/1:0,71:31:71:1.00:2	./.
chr13	113530199	rs11616795	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,15:29:39:0.385:2	./.	./.	./.
chr13	113534907	rs9577174	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,9:29:25:0.360:2	0/1:11,3:30:14:0.214:2	./.	./.	./.	0/1:18,18:27:36:0.500:2	0/1:18,5:29:23:0.217:2	0/1:23,14:29:37:0.378:2	0/1:0,17:31:17:1.00:2	./.	0/1:12,8:28:20:0.400:2
chr13	113536132	rs1290177	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,36:30:73:0.493:2	0/1:19,19:30:38:0.500:2	0/1:0,9:30:9:1.00:2	0/1:2,78:30:80:0.975:2	0/1:2,86:30:88:0.977:2	0/1:42,47:29:89:0.528:2	./.	0/1:78,72:30:150:0.480:2	./.	0/1:44,34:30:78:0.436:2	0/1:40,35:29:75:0.467:2
chr13	113556652	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,5:28:155:0.032:2	./.	./.	./.	./.
chr13	113656216	rs7986677	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,3:32:3:1.00:2	0/1:0,6:31:6:1.00:2	./.	0/1:2,13:31:15:0.867:2	0/1:0,7:32:7:1.00:2	0/1:4,6:31:10:0.600:2	./.	./.	./.	0/1:0,4:30:4:1.00:2	0/1:0,3:30:3:1.00:2
chr13	113681243	rs9549343	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:25,12:32:37:0.324:2	0/1:9,9:32:18:0.500:2	./.	./.	0/1:13,18:29:31:0.581:2	./.	0/1:2,47:31:49:0.959:2	./.	0/1:13,22:31:35:0.629:2	./.	./.
chr13	113688228	rs3011507	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,36:28:90:0.400:2	0/1:24,22:28:46:0.478:2	0/1:0,13:29:13:1.00:2	0/1:0,128:29:128:1.00:2	0/1:84,98:28:182:0.538:2	0/1:80,65:29:145:0.448:2	0/1:2,155:29:158:0.987:2	0/1:0,171:29:171:1.00:2	0/1:69,53:30:122:0.434:2	0/1:1,99:28:100:0.990:2	0/1:2,117:28:119:0.983:2
chr13	113688260	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:30:82:0.049:2	./.
chr13	113688269	rs3011506	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:28:11:0.455:2	./.	./.	./.	./.	0/1:121,4:33:125:0.032:2	./.	0/1:40,28:30:69:0.412:2	0/1:2,81:30:83:0.976:2
chr13	113699138	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:30:103:0.039:2	./.
chr13	113720476	rs2297192	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:14,13:31:27:0.481:2	0/1:8,10:32:18:0.556:2	0/1:4,3:32:7:0.429:2	./.	./.	./.	./.	./.	./.	0/1:10,13:33:23:0.565:2	0/1:0,23:32:23:1.00:2
chr13	113728781	rs3814264	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:31:12:0.667:2	./.	./.	./.	./.	./.	./.	0/1:2,110:32:112:0.982:2	0/1:2,104:32:106:0.981:2
chr13	113733009	rs35155188	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,15:30:30:0.500:2	0/1:12,13:32:25:0.520:2	./.	./.	./.	0/1:17,21:31:38:0.553:2	./.	./.	./.	./.	./.
chr13	113735608	rs2236371	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,29:30:52:0.558:2	./.	./.	0/1:19,32:32:51:0.627:2	./.	./.	./.
chr13	113739226	rs2281723	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,16:29:40:0.400:2	./.	./.	0/1:0,46:30:46:1.00:2	./.	./.	./.
chr13	113741590	rs9604022	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,46:31:129:0.357:2	./.	./.	0/1:1,87:33:88:0.989:2	./.	./.
chr13	113741725	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,4:33:47:0.085:2	./.	./.	./.	./.	./.	./.	./.
chr13	113744433	rs139940844	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,11:30:36:0.306:2	./.	./.
chr13	113744441	rs4907588	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,18:33:33:0.545:2	./.	./.	0/1:0,29:32:29:1.00:2	./.	./.	./.
chr13	113745489	rs149763276	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,46:31:90:0.511:2	./.	./.	./.	./.	./.	./.
chr13	113750905	rs140657264	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:28:3:1.00:2	./.	./.	./.
chr13	113760228	rs6039	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,12:33:36:0.333:2	0/1:11,7:32:18:0.389:2	./.	./.	./.	0/1:34,34:32:68:0.500:2	0/1:34,25:32:59:0.424:2	./.	0/1:19,12:32:31:0.387:2	./.	./.
chr13	113765021	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr13	113768196	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:32:139:0.029:2	./.	./.	./.	./.	./.
chr13	113770068	rs6042	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,47:30:101:0.465:2	0/1:71,70:31:141:0.496:2	./.	0/1:46,43:33:89:0.483:2	./.	./.
chr13	113773092	rs190485816	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,72:32:173:0.416:2	./.	./.	./.	./.
chr13	113773159	rs6046	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,60:32:120:0.500:2	0/1:43,54:31:97:0.557:2	./.	0/1:35,60:33:95:0.632:2	./.	./.
chr13	113777229	rs3211718	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,19:31:42:0.452:2	./.	./.	./.
chr13	113792754	rs2251102	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,14:33:22:0.636:2	./.	./.	./.	0/1:1,23:32:24:0.958:2	0/1:0,29:32:29:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,40:34:40:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,53:33:53:1.00:2
chr13	113795261	rs5962	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,19:33:46:0.413:2	0/1:20,13:30:33:0.394:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	113801737	rs5960	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:31:77:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,106:31:106:1.00:2	0/1:0,81:31:81:1.00:2	0/1:0,91:31:91:1.00:2	0/1:4,98:31:102:0.961:2	0/1:2,95:31:97:0.979:2	0/1:2,115:32:117:0.983:2	0/1:58,29:32:87:0.333:2	0/1:0,80:31:80:1.00:2
chr13	113803625	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:32:101:0.040:2	./.	./.
chr13	113812962	rs2273971	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:30:39:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,4:32:5:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,26:31:27:1.00:2	0/1:0,23:31:23:1.00:2
chr13	113818900	rs564081	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:29:79:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,11:28:11:1.00:2	0/1:0,123:29:123:1.00:2	0/1:0,165:29:165:1.00:2	0/1:0,115:29:115:1.00:2	0/1:0,154:28:154:1.00:2	0/1:0,144:29:144:1.00:2	0/1:1,123:30:124:0.992:2	0/1:0,67:30:67:1.00:2	0/1:0,78:28:78:1.00:2
chr13	113825992	rs146398692	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,26:27:57:0.456:2	./.	./.	./.	./.	./.
chr13	113826100	rs3024772	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	0/1:21,21:29:42:0.500:2	./.	./.	0/1:27,17:30:44:0.386:2	./.	./.	./.
chr13	113834284	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:32:124:0.032:2	./.	./.
chr13	113887653	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,4:32:81:0.049:2	./.	./.	./.	./.	./.	./.	./.
chr13	113897296	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:33:162:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	113897320	rs3764124	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,9:31:17:0.529:2	./.	0/1:1,174:30:175:0.994:2	./.	./.	0/1:94,59:30:153:0.386:2	./.	0/1:86,67:31:153:0.438:2	./.
chr13	113909339	rs2302757	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:33:10:0.400:2	./.	0/1:1,51:32:52:0.981:2	./.	./.	0/1:52,43:33:95:0.453:2	./.	0/1:39,30:33:69:0.435:2	./.
chr13	113965176	rs9577503	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:33:32:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,90:33:90:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,56:33:56:1.00:2	0/1:0,51:33:51:1.00:2	0/1:0,49:32:49:1.00:2
chr13	113979880	rs55866528	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:10,7:32:17:0.412:2	0/1:4,5:32:9:0.556:2	./.	0/1:8,6:33:14:0.429:2	./.	./.	./.	./.	./.	0/1:1,5:33:6:0.833:2	./.
chr13	113980081	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:33:69:0.058:2
chr13	113980342	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr13	114078558	rs41306688	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,45:28:109:0.413:2
chr13	114088074	rs139075628	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr13	114112389	rs41286638	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,29:33:54:0.537:2	./.
chr13	114150107	rs11164135	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,6:31:16:0.375:2	./.	./.	./.	./.	./.
chr13	114152755	rs2260218	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:32:9:0.444:2	0/1:27,18:32:45:0.400:2	./.	./.	./.	./.	./.	./.	./.
chr13	114154419	rs2260159	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,7:31:11:0.636:2	0/1:39,42:30:81:0.519:2	./.	./.	./.	./.	./.	./.	./.
chr13	114156093	rs2260080	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,5:31:12:0.417:2	0/1:79,70:33:149:0.470:2	./.	./.	./.	./.	./.	0/1:73,58:33:131:0.443:2	./.
chr13	114157846	rs9805588	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:49,51:32:100:0.510:2	0/1:40,14:32:54:0.259:2	./.	./.	./.	./.	0/1:35,13:31:48:0.271:2	./.	./.	./.	./.
chr13	114174981	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:31:111:0.036:2
chr13	114175004	rs2260334	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,11:32:17:0.647:2	0/1:52,49:32:101:0.485:2	./.	./.	./.	./.	./.	0/1:54,27:32:81:0.333:2	./.
chr13	114175032	rs2260335	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,13:30:21:0.619:2	0/1:36,41:30:77:0.532:2	./.	./.	./.	./.	./.	./.	./.
chr13	114175038	rs7319493	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,22:29:48:0.458:2	0/1:17,13:31:30:0.433:2	./.	./.	./.	0/1:31,28:29:59:0.475:2	./.	0/1:48,44:28:93:0.478:2	./.	./.	./.
chr13	114188430	rs77834374	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,19:18:55:0.345:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	114265305	rs4150729	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,85:31:181:0.470:2	./.	./.	./.	./.	./.
chr13	114288297	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:31:112:0.036:2	./.
chr13	114303764	rs17852631	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:82,58:33:140:0.414:2	0/1:32,33:32:65:0.508:2	./.	./.	./.	./.	./.	0/1:97,82:33:179:0.458:2	./.	./.	0/1:82,75:33:157:0.478:2
chr13	114309226	rs11164142	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,68:32:68:1.00:2	0/1:0,31:32:31:1.00:2	./.	./.	0/1:85,55:31:140:0.393:2	./.	./.	0/1:0,125:32:125:1.00:2	0/1:43,50:33:93:0.538:2	0/1:32,37:32:69:0.536:2	./.
chr13	114312354	rs9285616	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,9:28:9:1.00:2	0/1:0,11:26:11:1.00:2	./.	0/1:0,22:27:22:1.00:2	0/1:0,16:26:16:1.00:2	0/1:0,18:25:18:1.00:2	0/1:0,13:26:13:1.00:2	0/1:0,19:26:19:1.00:2	0/1:0,7:28:7:1.00:2	0/1:0,11:26:11:1.00:2	0/1:0,8:25:8:1.00:2
chr13	114312380	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,3:32:39:0.077:2	./.	./.	./.	./.	./.	./.
chr13	114322289	rs9796035	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,65:32:66:0.985:2	0/1:0,32:32:32:1.00:2	0/1:0,7:33:7:1.00:2	0/1:65,56:33:121:0.463:2	0/1:0,66:32:66:1.00:2	0/1:35,38:32:73:0.521:2	0/1:44,36:32:80:0.450:2	0/1:2,96:32:98:0.980:2	0/1:80,43:33:123:0.350:2	0/1:56,29:32:85:0.341:2	./.
chr13	114471121	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,31:32:81:0.383:2	./.	./.	./.	./.	./.
chr13	114471900	rs9604527	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,28:31:28:1.00:2	0/1:74,71:31:145:0.490:2	./.	./.	0/1:88,68:32:156:0.436:2	./.	./.	./.	./.
chr13	114504663	rs41284482	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:29,31:32:60:0.517:2	0/1:29,20:31:49:0.408:2	./.	./.	./.	./.	./.	0/1:61,65:31:126:0.516:2	./.	./.	./.
chr13	114524944	rs7400002	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,4:31:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	114530114	rs1803628	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,33:30:71:0.465:2	0/1:22,20:31:42:0.476:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr13	114531565	rs8191975	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:0,73:32:73:1.00:2	0/1:1,52:32:53:0.981:2	./.	./.	./.	./.	./.	./.	./.	0/1:69,50:32:119:0.420:2	./.
chr13	114531587	rs113292330	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,89:31:171:0.520:2	./.	./.	./.	./.	./.
chr13	114537583	rs201106944	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,9:21:34:0.265:2	./.	0/1:5,5:17:10:0.500:2	0/1:47,16:21:63:0.254:2	0/1:50,24:19:74:0.324:2	0/1:54,16:19:70:0.229:2	0/1:49,18:17:67:0.269:2	0/1:55,20:21:75:0.267:2	0/1:42,13:16:55:0.236:2	0/1:35,14:18:49:0.286:2	0/1:19,8:21:27:0.296:2
chr13	114765082	rs148651994	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,11:31:23:0.478:2	./.	./.	./.	./.	./.	./.	./.	./.
chr13	114774952	rs41291211	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,17:30:26:0.654:2	0/1:16,13:31:29:0.448:2	./.	./.	./.	./.	0/1:15,20:31:35:0.571:2
chr13	114780764	rs2274717	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,20:30:20:1.00:2	0/1:0,18:29:18:1.00:2	./.	0/1:0,52:30:52:1.00:2	0/1:47,31:30:79:0.397:2	0/1:23,29:30:52:0.558:2	0/1:55,57:29:112:0.509:2	0/1:0,64:30:64:1.00:2	0/1:28,19:31:47:0.404:2	0/1:26,13:29:39:0.333:2	./.
chr13	114782779	rs61749934	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:42,40:32:82:0.488:2	0/1:26,14:32:40:0.350:2	./.	0/1:96,65:32:161:0.404:2	./.	./.	0/1:110,81:32:191:0.424:2	0/1:99,72:31:171:0.421:2	./.	0/1:63,57:32:120:0.475:2	./.
chr13	115002305	rs8002514	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:30,13:32:43:0.302:2	0/1:19,12:32:31:0.387:2	./.	./.	0/1:30,14:31:44:0.318:2	0/1:27,25:31:52:0.481:2	0/1:25,19:32:44:0.432:2	0/1:18,29:30:47:0.617:2	./.	./.	./.
chr13	115004914	rs2296971	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:26,20:32:46:0.435:2	0/1:12,5:32:17:0.294:2	./.	./.	0/1:28,8:30:36:0.222:2	0/1:21,14:30:35:0.400:2	0/1:18,13:31:31:0.419:2	0/1:30,11:32:41:0.268:2	./.	./.	./.
chr13	115004935	rs2296970	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,19:33:38:0.500:2	0/1:13,4:33:17:0.235:2	./.	./.	0/1:33,6:28:39:0.154:2	0/1:18,14:33:32:0.438:2	0/1:15,9:32:24:0.375:2	0/1:30,8:33:38:0.211:2	./.	./.	./.
chr13	115009396	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:32:112:0.036:2	./.	./.	./.	./.
chr13	115030714	rs8809	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:55,64:30:119:0.538:2	0/1:38,41:29:79:0.519:2	./.	./.	0/1:66,56:29:122:0.459:2	0/1:70,75:30:145:0.517:2	0/1:95,72:31:167:0.431:2	0/1:89,61:29:150:0.407:2	./.	./.	./.
chr13	115047305	rs3752105	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,26:30:38:0.684:2	./.	./.	./.	0/1:6,10:31:16:0.625:2	0/1:22,14:30:36:0.389:2	0/1:4,4:33:8:0.500:2	0/1:25,16:30:41:0.390:2	./.	./.	./.
chr13	115052064	rs144763337	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,17:31:21:0.810:2	./.	./.	./.	./.	./.	./.	./.	./.
chr13	115064423	rs3752107	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,80:30:172:0.465:2
chr13	115067279	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:138,4:31:142:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr13	115090019	rs3813131	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,23:33:48:0.479:2
chr13	115090193	rs3813133	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,13:31:29:0.448:2
chr13	115091073	rs117710037	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,17:31:52:0.327:2	./.	./.	./.	./.	./.
chr13	115091399	rs9525332	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,49:30:116:0.422:2
chr13	115092676	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,3:31:14:0.214:2	./.	./.	./.	./.	./.
chr14	19377600	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,7:31:115:0.061:2	./.	0/1:121,10:30:131:0.076:2	./.	./.	./.	./.	./.
chr14	19377614	rs200891589	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:132,8:33:140:0.057:2	0/1:82,9:32:91:0.099:2	./.	0/1:107,10:31:117:0.085:2	./.	./.	0/1:120,5:33:125:0.040:2	0/1:153,8:31:161:0.050:2	0/1:134,6:33:140:0.043:2	./.	0/1:159,4:33:163:0.025:2
chr14	19377781	rs140389230	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,8:32:183:0.044:2	./.	./.	./.	./.	./.
chr14	19377795	rs141152619	T	C,A	.	PASS	AC=5,2;AF=0.238,0.095;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant10-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	0/1:28:156:0.141:2	0/1:26:131:0.107:2	0/2:32:38:0.316:2	./.	./.	0/1:26:178:0.090:2	0/1:25:37:0.528:2	./.	0/2:33:174:0.283:2	./.	0/1:27:149:0.081:2
chr14	19377802	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:26:36:0.111:2	./.	./.	./.	./.
chr14	19377859	rs150290074	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:177,14:33:191:0.073:2	0/1:134,21:32:155:0.135:2	./.	./.	./.	0/1:169,9:33:178:0.051:2	0/1:65,20:32:85:0.235:2	./.	./.	./.	0/1:175,14:30:189:0.074:2
chr14	19377862	rs202115314	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:184,9:31:193:0.047:2	./.	./.	0/1:142,4:31:146:0.027:2	./.	0/1:168,11:30:179:0.061:2	./.	0/1:167,5:31:172:0.029:2	./.	./.	./.
chr14	19377873	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,9:32:192:0.047:2	0/1:161,12:33:173:0.069:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	19377881	rs138502172	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:174,13:29:187:0.070:2	0/1:160,22:32:182:0.121:2	./.	./.	./.	0/1:183,10:29:194:0.052:2	./.	./.	./.	./.	./.
chr14	19377898	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,7:31:195:0.036:2	0/1:186,5:32:191:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	19377907	rs367996724	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:158,38:31:196:0.194:2	0/1:160,32:31:192:0.167:2	0/1:32,6:30:38:0.158:2	0/1:152,46:31:198:0.232:2	0/1:122,19:29:141:0.135:2	0/1:139,52:31:191:0.272:2	0/1:108,19:32:127:0.150:2	0/1:151,45:31:196:0.230:2	0/1:180,16:32:196:0.082:2	0/1:162,33:31:195:0.169:2	0/1:179,14:32:193:0.073:2
chr14	19377938	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,6:30:196:0.031:2	0/1:190,4:32:194:0.021:2	./.	./.	./.	./.
chr14	19378012	rs150259833	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,18:31:105:0.171:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	19378030	rs138051664	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:114,76:32:190:0.400:2	0/1:121,74:32:196:0.379:2	0/1:74,49:31:123:0.398:2	0/1:96,101:32:197:0.513:2	0/1:128,66:32:194:0.340:2	0/1:103,95:32:198:0.480:2	0/1:149,49:32:198:0.247:2	0/1:100,99:33:199:0.497:2	0/1:142,52:33:194:0.268:2	0/1:93,104:32:198:0.528:2	0/1:132,62:32:194:0.320:2
chr14	19378039	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,31:33:199:0.157:2	./.
chr14	19378094	rs147199643	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:175,15:28:191:0.079:2	0/1:176,18:31:194:0.093:2	0/1:191,7:32:198:0.035:2	./.	0/1:190,8:32:198:0.040:2	./.	./.	./.	./.	./.	0/1:185,11:32:196:0.056:2
chr14	19378135	rs202226673	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:183,6:33:189:0.032:2	./.	0/1:146,4:31:150:0.027:2	./.	0/1:189,10:30:199:0.050:2	0/1:195,4:33:199:0.020:2	0/1:195,5:32:200:0.025:2	./.	0/1:188,7:33:196:0.036:2	./.	./.
chr14	19378139	rs199688825	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,20:33:197:0.102:2	./.	./.	./.	./.	./.
chr14	19378189	rs201806505	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:135,50:30:185:0.270:2	0/1:146,46:31:192:0.240:2	0/1:53,18:30:71:0.254:2	0/1:154,39:29:193:0.202:2	0/1:155,31:29:186:0.167:2	0/1:119,77:30:196:0.393:2	0/1:164,17:30:181:0.094:2	0/1:146,43:29:190:0.228:2	0/1:176,23:30:199:0.116:2	0/1:147,42:29:190:0.222:2	0/1:165,28:29:193:0.145:2
chr14	19378246	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,12:29:199:0.060:2	./.	./.	0/1:194,5:30:199:0.025:2	./.	./.
chr14	19378292	rs201093021	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:185,8:32:193:0.041:2	0/1:184,8:31:192:0.042:2	./.	./.	0/1:189,8:31:198:0.041:2	0/1:192,4:32:197:0.020:2	./.	0/1:190,7:30:197:0.036:2	./.	0/1:185,8:32:193:0.041:2	./.
chr14	19378296	rs200144216	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:184,6:32:190:0.032:2	0/1:184,9:30:193:0.047:2	0/1:46,4:31:50:0.080:2	./.	0/1:191,8:29:199:0.040:2	0/1:183,14:28:197:0.071:2	./.	0/1:189,7:29:196:0.036:2	./.	0/1:190,7:29:197:0.036:2	./.
chr14	19378312	rs201880193	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:163,28:33:191:0.147:2	0/1:157,36:32:193:0.187:2	./.	./.	./.	0/1:150,39:33:189:0.206:2	0/1:88,104:32:193:0.542:2	./.	./.	./.	0/1:161,36:32:197:0.183:2
chr14	19378321	rs200908438	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:194,6:28:200:0.030:2	0/1:190,5:30:195:0.026:2	./.	./.	./.	./.	./.
chr14	19378348	rs200662012	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,8:30:95:0.084:2	./.	0/1:191,7:31:198:0.035:2	0/1:177,18:29:196:0.092:2	0/1:186,9:29:196:0.046:2	0/1:185,11:28:196:0.056:2	0/1:186,13:30:199:0.065:2	0/1:183,10:30:194:0.052:2	0/1:183,5:31:189:0.027:2
chr14	19378395	rs201551285	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:150,47:32:197:0.239:2	0/1:146,53:33:199:0.266:2	0/1:100,40:32:140:0.286:2	./.	0/1:161,38:33:199:0.191:2	0/1:160,39:33:199:0.196:2	0/1:164,33:33:197:0.168:2	./.	0/1:111,84:33:195:0.431:2	./.	0/1:171,24:32:195:0.123:2
chr14	19378495	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,6:28:177:0.034:2	./.
chr14	19378499	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:140,19:32:159:0.119:2	0/1:129,20:31:149:0.134:2	./.	./.	./.	0/1:125,17:31:142:0.120:2	./.	./.	./.	0/1:156,17:31:173:0.098:2	0/1:145,12:31:157:0.076:2
chr14	19553436	rs201747513	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:133,40:30:173:0.231:2	0/1:141,44:31:185:0.238:2	0/1:153,30:29:184:0.164:2	0/1:145,37:29:182:0.203:2	0/1:152,30:29:184:0.165:2	0/1:160,15:29:176:0.086:2	0/1:149,31:29:180:0.172:2	0/1:154,27:29:181:0.149:2	0/1:137,46:30:184:0.251:2	0/1:155,20:30:176:0.114:2	0/1:131,43:30:175:0.247:2
chr14	19553443	rs202218898	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:131,43:30:174:0.247:2	0/1:149,39:32:188:0.207:2	0/1:157,28:32:185:0.151:2	0/1:140,39:32:180:0.218:2	0/1:157,32:31:189:0.169:2	0/1:158,14:32:174:0.081:2	0/1:154,30:31:184:0.163:2	0/1:155,27:32:182:0.148:2	0/1:141,47:32:188:0.250:2	0/1:154,17:33:171:0.099:2	0/1:127,45:32:172:0.262:2
chr14	19553451	rs201677121	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:173,13:31:186:0.070:2	./.	./.	./.	./.	./.	./.	./.
chr14	19553479	.	A	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:142,13:30:156:0.084:2	0/1:172,8:28:180:0.044:2	./.	0/1:177,8:35:185:0.043:2	0/1:173,7:25:181:0.039:2	0/1:161,12:31:173:0.069:2	0/1:176,6:32:182:0.033:2	0/1:176,7:33:183:0.038:2	0/1:166,6:34:172:0.035:2	0/1:174,7:34:181:0.039:2	0/1:151,13:31:164:0.079:2
chr14	19553494	rs200256710	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:157,6:30:163:0.037:2	./.	0/1:154,22:26:176:0.125:2	./.	./.	0/1:162,23:29:185:0.124:2	0/1:112,57:30:169:0.337:2	./.	./.
chr14	19553501	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:32:181:0.022:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,5:33:168:0.030:2
chr14	19553524	rs142702316	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,38:31:140:0.271:2	./.	0/1:165,25:32:190:0.132:2	0/1:172,13:31:185:0.070:2	./.	./.	./.	0/1:140,45:33:185:0.243:2	0/1:153,27:33:180:0.150:2
chr14	19553531	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:33:182:0.022:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	19553556	rs79489020	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:154,31:31:185:0.168:2	0/1:153,23:31:176:0.131:2	./.	./.	./.	./.	0/1:160,25:31:185:0.135:2	./.	0/1:154,39:32:193:0.202:2	./.	0/1:158,27:31:185:0.146:2
chr14	19553569	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:174,10:32:184:0.054:2	0/1:162,9:33:171:0.053:2	0/1:103,4:32:107:0.037:2	0/1:172,5:33:177:0.028:2	0/1:182,6:32:188:0.032:2	0/1:176,5:32:181:0.028:2	./.	0/1:183,7:32:190:0.037:2	0/1:175,5:35:180:0.028:2	./.	0/1:172,8:33:180:0.044:2
chr14	19553590	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,9:30:189:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	19553613	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,10:30:178:0.056:2	./.
chr14	19553642	rs201268355	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,96:28:159:0.604:2	0/1:51,71:29:122:0.582:2	0/1:1,19:28:20:0.950:2	0/1:86,86:29:172:0.500:2	0/1:118,57:27:175:0.326:2	0/1:137,52:28:189:0.275:2	0/1:141,47:28:188:0.250:2	0/1:122,61:29:183:0.333:2	0/1:92,79:29:171:0.462:2	0/1:102,66:28:169:0.393:2	0/1:123,51:27:174:0.293:2
chr14	19553653	rs201360940	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,8:29:187:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	19553680	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:181,9:31:190:0.047:2	0/1:181,6:27:187:0.032:2	./.	0/1:189,5:28:194:0.026:2	./.	./.	./.	./.	./.	0/1:185,6:28:191:0.031:2	./.
chr14	19553760	rs375902660	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:32:179:0.022:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	19553764	rs77983807	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:136,41:33:181:0.232:2	./.	0/1:79,73:32:154:0.480:2	0/1:100,88:33:189:0.468:2	0/1:135,53:32:191:0.282:2	0/1:129,59:32:188:0.314:2	0/1:66,125:33:192:0.654:2	0/1:125,65:33:190:0.342:2	0/1:152,40:34:195:0.208:2	0/1:152,36:33:188:0.191:2	0/1:121,58:33:179:0.324:2
chr14	19553771	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,5:31:180:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	19553795	rs149181731	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,18:31:162:0.111:2	./.	./.	./.	./.	0/1:174,23:30:197:0.117:2	./.	./.	./.
chr14	19553808	rs143403321	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:137,27:30:164:0.165:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	19553842	rs200726878	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:175,9:31:184:0.049:2	0/1:185,9:31:194:0.046:2	./.	0/1:153,36:31:189:0.190:2	./.	./.	./.	0/1:174,19:31:193:0.098:2	./.	./.	./.
chr14	19553845	rs145769706	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:148,31:29:179:0.173:2	0/1:149,37:31:186:0.199:2	0/1:130,56:30:187:0.301:2	0/1:154,34:30:188:0.181:2	0/1:165,31:31:196:0.158:2	0/1:179,16:30:195:0.082:2	./.	0/1:182,14:29:196:0.071:2	0/1:163,29:32:192:0.151:2	0/1:104,90:32:194:0.464:2	0/1:157,32:32:189:0.169:2
chr14	19553852	rs138358738	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:134,56:33:190:0.295:2	0/1:148,45:32:193:0.233:2	0/1:134,62:31:196:0.316:2	0/1:132,59:32:191:0.309:2	0/1:171,24:30:195:0.123:2	0/1:176,19:32:195:0.097:2	./.	0/1:174,23:32:197:0.117:2	0/1:163,30:33:193:0.155:2	0/1:110,83:31:193:0.430:2	0/1:155,38:32:193:0.197:2
chr14	19558994	rs138773680	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,5:33:196:0.026:2	./.
chr14	19559050	.	G	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:160,34:33:194:0.175:2	0/1:185,13:33:198:0.066:2	0/1:94,36:32:130:0.277:2	0/1:165,34:32:199:0.171:2	0/1:191,6:33:197:0.030:2	./.	0/1:184,12:32:196:0.061:2	0/1:189,9:32:198:0.045:2	0/1:186,14:34:200:0.070:2	0/1:187,7:33:195:0.036:2	0/1:186,6:34:192:0.031:2
chr14	19559078	rs201796049	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:160,8:30:168:0.048:2	./.	0/1:175,20:31:195:0.103:2	./.	./.	0/1:175,22:31:197:0.112:2	0/1:162,36:31:198:0.182:2	./.	./.
chr14	19559106	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:188,11:32:199:0.055:2	0/1:191,7:32:198:0.035:2	0/1:145,35:32:180:0.194:2	0/1:185,11:32:196:0.056:2	0/1:190,5:31:196:0.026:2	./.	./.	./.	./.	./.	./.
chr14	19559130	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,14:29:199:0.070:2	0/1:188,10:32:198:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	19559150	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:186,5:32:191:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr14	19573084	rs371247334	G	T,A	.	PASS	AC=3,1;AF=0.250,0.083;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant10	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	0/1:33:190:0.021:2	./.	./.	./.	0/1:32:195:0.026:2	./.	./.	0/2:30:190:0.032:2	0/1:33:193:0.047:2	./.	./.
chr14	19573100	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,6:30:117:0.051:2	./.	./.	./.	./.	0/1:187,6:31:193:0.031:2	./.	./.	./.
chr14	19573115	rs146788089	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,30:32:185:0.162:2	./.	./.	./.	./.
chr14	19573134	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,5:32:88:0.057:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	19574243	rs200779890	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:179,15:30:194:0.077:2	0/1:187,9:31:196:0.046:2	./.	0/1:156,25:31:181:0.138:2	0/1:179,8:31:187:0.043:2	0/1:177,17:30:194:0.088:2	0/1:166,16:31:182:0.088:2	0/1:185,7:30:192:0.036:2	0/1:129,22:32:151:0.146:2	./.	0/1:182,13:31:195:0.067:2
chr14	19574313	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,21:33:192:0.109:2	./.	./.
chr14	19582995	.	G	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:158,18:33:176:0.102:2	0/1:174,15:33:189:0.079:2	0/1:92,14:31:106:0.132:2	0/1:142,30:32:172:0.174:2	0/1:160,15:31:175:0.086:2	0/1:171,28:31:199:0.141:2	0/1:167,10:30:177:0.056:2	0/1:142,18:31:160:0.113:2	0/1:177,11:33:188:0.059:2	./.	./.
chr14	19583003	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:33:163:0.025:2	./.	./.	./.	./.
chr14	19583072	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:31:89:0.045:2	./.	./.	./.	./.
chr14	19990641	rs138327719	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:176,17:31:193:0.088:2	0/1:172,22:32:194:0.113:2	0/1:75,25:31:100:0.250:2	0/1:160,32:32:192:0.167:2	0/1:181,9:32:190:0.047:2	0/1:160,35:31:195:0.179:2	0/1:169,14:32:183:0.077:2	0/1:184,12:32:197:0.061:2	0/1:178,14:32:192:0.073:2	./.	./.
chr14	19999324	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,8:33:176:0.045:2	./.	./.
chr14	20000467	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:29:198:0.025:2	./.
chr14	20000503	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:150,9:31:160:0.057:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	20000522	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:32:189:0.021:2	./.	./.	./.	./.
chr14	20000537	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:32:171:0.023:2	./.	0/1:188,6:32:194:0.031:2	./.	./.
chr14	20000545	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:174,4:33:178:0.022:2	./.	./.	./.	./.	./.	./.
chr14	20000553	rs200807180	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:177,14:32:193:0.073:2	0/1:184,12:32:197:0.061:2	0/1:117,25:31:142:0.176:2	0/1:171,23:31:197:0.119:2	0/1:146,19:30:166:0.115:2	./.	./.	./.	0/1:178,13:32:194:0.068:2	./.	./.
chr14	20007593	rs199513642	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:98,10:33:108:0.093:2	./.	./.	0/1:134,4:33:138:0.029:2	./.	0/1:153,7:30:160:0.044:2	./.	./.	0/1:142,4:33:149:0.027:2	./.	./.
chr14	20010130	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,21:33:192:0.109:2	0/1:183,13:33:196:0.066:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	20010197	rs201777669	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,17:31:66:0.258:2	./.	./.	./.	0/1:86,11:26:97:0.113:2	./.	./.	./.
chr14	20010207	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,4:32:33:0.121:2	./.	0/1:51,6:32:57:0.105:2	0/1:65,14:31:79:0.177:2	./.	./.	0/1:56,7:32:63:0.111:2	0/1:39,28:32:67:0.418:2	0/1:136,10:33:146:0.068:2
chr14	20019785	rs200978838	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:132,42:31:174:0.241:2	0/1:132,36:32:168:0.214:2	0/1:77,23:31:100:0.230:2	0/1:134,51:31:185:0.276:2	0/1:167,16:31:183:0.087:2	0/1:151,32:30:183:0.175:2	./.	0/1:168,19:31:187:0.102:2	0/1:162,22:32:184:0.120:2	0/1:94,84:31:178:0.472:2	0/1:158,31:31:189:0.164:2
chr14	20019792	rs377394087	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:127,45:30:172:0.262:2	0/1:117,32:30:149:0.215:2	0/1:74,21:29:95:0.221:2	0/1:135,50:30:185:0.270:2	0/1:162,15:29:177:0.085:2	0/1:156,33:28:189:0.175:2	./.	0/1:163,16:29:179:0.089:2	0/1:160,23:31:183:0.126:2	0/1:91,81:30:172:0.471:2	0/1:160,33:29:193:0.171:2
chr14	20019795	rs201013704	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:160,17:31:177:0.096:2	0/1:127,14:31:141:0.099:2	./.	0/1:136,48:31:184:0.261:2	./.	./.	./.	0/1:160,15:30:176:0.086:2	./.	./.	./.
chr14	20019829	rs200256243	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,4:31:66:0.061:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	20019840	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,4:32:138:0.029:2	./.	./.	./.	./.	0/1:106,5:30:111:0.045:2	./.	./.
chr14	20019842	rs201157355	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,6:31:60:0.100:2	./.	./.	./.	./.	0/1:103,14:30:117:0.120:2	./.	./.	./.
chr14	20019864	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,53:31:57:0.930:2	0/1:0,38:30:38:1.00:2	0/1:31,10:30:41:0.244:2	0/1:4,59:31:63:0.937:2	0/1:6,37:30:43:0.860:2	0/1:3,83:30:86:0.965:2	0/1:5,45:30:50:0.900:2	0/1:9,53:29:62:0.855:2	0/1:2,41:31:43:0.953:2	0/1:5,62:30:68:0.925:2	0/1:121,30:30:152:0.199:2
chr14	20019873	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:52,33:33:85:0.388:2	0/1:35,17:32:53:0.327:2	0/1:34,5:32:39:0.128:2	./.	0/1:51,13:33:64:0.203:2	0/1:36,79:33:116:0.687:2	0/1:15,59:32:74:0.797:2	0/1:58,32:32:92:0.356:2	0/1:41,28:33:69:0.406:2	0/1:64,26:32:93:0.289:2	0/1:159,20:33:180:0.112:2
chr14	20019914	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:116,4:32:120:0.033:2	./.	0/1:179,5:27:184:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr14	20019957	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:167,7:28:174:0.040:2	0/1:170,16:28:186:0.086:2	./.	0/1:179,9:27:188:0.048:2	./.	./.	./.	./.	0/1:184,8:27:192:0.042:2	./.	0/1:171,7:26:178:0.039:2
chr14	20019984	rs200569982	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,11:32:187:0.059:2	0/1:180,7:32:187:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	20020024	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,28:30:154:0.182:2	./.
chr14	20020047	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:32:175:0.023:2	./.	./.	./.	./.	./.
chr14	20020071	rs201460508	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,84:30:86:0.977:2	0/1:1,43:30:44:0.977:2	0/1:0,15:31:16:1.00:2	0/1:0,71:31:73:1.00:2	0/1:3,53:30:56:0.946:2	0/1:0,93:31:93:1.00:2	0/1:1,56:31:57:0.982:2	0/1:2,85:30:87:0.977:2	0/1:1,60:31:61:0.984:2	0/1:1,79:30:80:0.988:2	0/1:104,37:30:144:0.262:2
chr14	20020081	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:77,5:32:82:0.061:2	./.	./.	./.	./.	0/1:93,5:31:98:0.051:2	./.	0/1:102,4:32:106:0.038:2	./.	./.
chr14	20020113	rs199622050	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,12:32:50:0.240:2	./.	0/1:159,33:31:192:0.172:2	0/1:176,17:31:193:0.088:2	./.	./.	./.	0/1:149,47:31:196:0.240:2	0/1:176,14:32:190:0.074:2
chr14	20020143	rs200891854	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,9:28:78:0.115:2	./.	0/1:175,14:28:190:0.074:2	./.	./.	0/1:173,17:30:190:0.089:2	0/1:125,62:30:187:0.332:2	./.	./.
chr14	20020158	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:170,10:31:180:0.056:2	0/1:180,4:32:184:0.022:2	./.	0/1:183,6:34:189:0.032:2	./.	./.	./.	./.	0/1:178,5:34:183:0.027:2	./.	./.
chr14	20020186	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:173,9:29:182:0.049:2	./.	./.	./.	./.	./.	./.	./.
chr14	20020194	rs202067492	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:134,39:31:173:0.225:2	0/1:127,28:32:155:0.181:2	0/1:89,25:31:114:0.219:2	0/1:140,46:30:186:0.247:2	0/1:154,36:31:191:0.189:2	0/1:151,15:30:166:0.090:2	0/1:152,38:30:190:0.200:2	0/1:160,26:31:186:0.140:2	0/1:131,51:32:183:0.280:2	0/1:151,32:31:183:0.175:2	0/1:135,33:29:169:0.196:2
chr14	20020201	rs201262647	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:137,41:30:178:0.230:2	0/1:135,26:31:161:0.161:2	0/1:87,26:28:113:0.230:2	0/1:142,42:29:184:0.228:2	0/1:146,38:29:184:0.207:2	0/1:153,18:28:171:0.105:2	0/1:153,39:29:192:0.203:2	0/1:167,27:29:194:0.139:2	0/1:126,58:30:185:0.315:2	0/1:157,30:30:187:0.160:2	0/1:139,34:29:173:0.197:2
chr14	20215748	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:33:51:0.078:2	./.	./.	./.	./.
chr14	20215989	rs17210864	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,11:33:33:0.333:2	./.	0/1:126,61:32:187:0.326:2	./.	./.	0/1:107,85:32:193:0.443:2	./.	./.	0/1:129,57:33:186:0.306:2
chr14	20216066	rs141710392	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,28:31:133:0.211:2	./.	./.	0/1:74,53:32:129:0.417:2	./.	./.	./.
chr14	20216298	rs12896533	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,190:32:190:1.00:2	0/1:0,133:32:133:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,93:32:93:1.00:2	0/1:1,89:32:90:0.989:2	0/1:88,35:32:123:0.285:2	0/1:2,67:32:69:0.971:2	0/1:0,116:32:116:1.00:2	0/1:1,139:33:140:0.993:2	0/1:39,44:32:83:0.530:2	0/1:40,92:32:132:0.697:2
chr14	20248649	rs148936935	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:177,8:32:185:0.043:2	./.	./.	./.	./.	./.	./.
chr14	20248683	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:188,6:31:194:0.031:2	./.	./.	./.	./.	./.	./.
chr14	20248828	rs2635535	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:150,35:30:185:0.189:2	0/1:150,44:31:194:0.227:2	0/1:19,9:31:28:0.321:2	0/1:105,88:30:193:0.456:2	0/1:135,53:30:188:0.282:2	./.	0/1:84,85:30:169:0.503:2	0/1:97,100:30:197:0.508:2	./.	./.	./.
chr14	20249114	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:31:197:0.025:2	0/1:193,4:33:197:0.020:2
chr14	20249164	rs201965864	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:182,10:31:192:0.052:2	0/1:184,13:32:197:0.066:2	./.	0/1:183,10:30:194:0.052:2	0/1:188,9:31:198:0.046:2	./.	0/1:188,9:30:197:0.046:2	0/1:188,11:32:199:0.055:2	./.	0/1:186,12:31:198:0.061:2	0/1:175,22:32:197:0.112:2
chr14	20249176	rs2815960	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:149,45:31:194:0.232:2	0/1:150,31:32:181:0.171:2	0/1:45,23:31:68:0.338:2	0/1:118,75:32:193:0.389:2	0/1:132,57:31:189:0.302:2	./.	0/1:103,86:32:189:0.455:2	0/1:120,76:32:196:0.388:2	./.	./.	./.
chr14	20249196	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:187,13:31:200:0.065:2	./.	./.	./.	./.	0/1:180,12:31:192:0.063:2	0/1:190,7:31:197:0.036:2
chr14	20295627	rs72663752	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:171,19:34:190:0.100:2	0/1:160,37:33:197:0.188:2	./.	0/1:106,94:32:200:0.470:2	0/1:158,39:32:197:0.198:2	./.	./.	0/1:110,83:32:193:0.430:2	./.	0/1:91,69:32:160:0.431:2	./.
chr14	20295756	rs201976604	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,6:33:101:0.059:2	./.	0/1:94,4:31:98:0.041:2	0/1:107,10:31:117:0.085:2	./.	./.	0/1:153,10:30:163:0.061:2
chr14	20295763	rs11621854	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:150,14:31:164:0.085:2	0/1:154,20:32:175:0.115:2	./.	./.	0/1:73,24:31:97:0.247:2	0/1:104,31:30:135:0.230:2	./.	./.	0/1:111,26:32:138:0.190:2	./.	0/1:70,89:31:159:0.560:2
chr14	20295778	rs11621883	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:165,13:32:178:0.073:2	0/1:148,20:32:168:0.119:2	./.	./.	0/1:73,15:32:88:0.170:2	0/1:98,22:31:120:0.183:2	./.	./.	0/1:108,13:32:121:0.107:2	./.	0/1:129,20:29:149:0.134:2
chr14	20295779	rs11621884	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:167,12:32:179:0.067:2	0/1:149,19:32:169:0.113:2	./.	./.	0/1:75,15:32:90:0.167:2	0/1:100,21:31:121:0.174:2	./.	./.	0/1:114,11:33:125:0.088:2	./.	0/1:134,17:32:152:0.113:2
chr14	20295834	rs2801164	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:125,57:32:182:0.313:2	0/1:114,57:32:171:0.333:2	0/1:8,16:32:24:0.667:2	./.	0/1:105,38:32:143:0.266:2	0/1:131,38:31:169:0.225:2	./.	./.	0/1:82,89:33:171:0.520:2	./.	0/1:79,105:32:184:0.571:2
chr14	20295845	rs201593869	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:135,7:32:142:0.049:2	./.	./.	0/1:139,5:29:144:0.035:2	./.	./.	./.
chr14	20295878	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:31:178:0.023:2
chr14	20295956	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,5:32:192:0.026:2	./.	./.	0/1:187,7:33:194:0.036:2
chr14	20295963	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,6:27:189:0.032:2	./.	./.	./.
chr14	20296004	rs2318279	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:161,28:32:190:0.148:2	0/1:161,31:31:192:0.161:2	./.	./.	0/1:143,47:31:190:0.247:2	0/1:144,53:31:197:0.269:2	./.	./.	0/1:140,52:32:192:0.271:2	./.	0/1:73,107:31:180:0.594:2
chr14	20296010	rs17114261	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:167,27:33:194:0.139:2	0/1:164,30:32:194:0.155:2	./.	./.	0/1:142,45:33:187:0.241:2	0/1:138,58:33:196:0.296:2	./.	./.	0/1:137,50:34:187:0.267:2	./.	0/1:138,50:33:188:0.266:2
chr14	20296025	rs2318277	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,9:29:191:0.048:2
chr14	20296058	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,19:15:178:0.107:2
chr14	20296063	rs367969252	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:30,20:9:50:0.400:2	0/1:141,33:10:174:0.190:2	0/1:147,40:7:187:0.214:2	0/1:127,48:9:175:0.274:2	0/1:143,41:8:184:0.223:2	0/1:124,53:9:177:0.299:2	./.	0/1:137,41:9:178:0.230:2	0/1:117,38:12:155:0.245:2
chr14	20296183	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,5:31:192:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	20296255	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,9:32:175:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	20296385	rs145567436	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:159,4:33:163:0.025:2	./.	./.	./.	./.	0/1:154,5:32:159:0.031:2	./.	./.	./.	./.
chr14	20296386	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,5:32:143:0.035:2	./.	./.
chr14	20296442	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,5:33:122:0.041:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	20296510	rs10149365	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,14:30:54:0.259:2
chr14	20345346	rs12883767	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	0/1:5,9:31:14:0.643:2	0/1:1,4:31:5:0.800:2	0/1:3,4:32:7:0.571:2	0/1:2,3:33:5:0.600:2	0/1:3,3:33:6:0.500:2	./.	./.
chr14	20389606	rs77615110	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,43:32:83:0.518:2	./.	./.	./.
chr14	20389721	rs17242341	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,29:32:41:0.707:2	./.	./.	./.
chr14	20403909	rs2792148	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:150,38:31:188:0.202:2	0/1:123,34:30:157:0.217:2	0/1:11,8:30:19:0.421:2	0/1:61,47:30:108:0.435:2	./.	0/1:56,92:30:148:0.622:2	./.	./.	0/1:62,88:31:150:0.587:2	./.	0/1:56,102:30:159:0.646:2
chr14	20404091	rs12885778	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,14:31:39:0.359:2	./.	0/1:114,46:30:161:0.288:2	0/1:60,130:31:190:0.684:2	0/1:65,58:31:123:0.472:2	./.	./.	./.	./.
chr14	20404238	rs3916626	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,58:33:153:0.379:2	./.	./.	./.
chr14	20404319	rs79774363	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,9:19:137:0.066:2
chr14	20404614	rs34608158	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,7:30:38:0.184:2	0/1:52,13:31:65:0.200:2	0/1:17,11:32:28:0.393:2	./.	./.	./.	./.
chr14	20404735	rs34394400	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:32:8:0.500:2	./.	0/1:20,11:32:31:0.355:2	0/1:28,15:32:43:0.349:2	0/1:9,14:33:24:0.609:2	./.	./.	./.	./.
chr14	20404736	rs2792146	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:73,9:32:82:0.110:2	0/1:33,3:32:36:0.083:2	./.	0/1:11,11:32:22:0.500:2	./.	0/1:16,25:28:41:0.610:2	./.	0/1:6,13:31:19:0.684:2	0/1:17,28:32:45:0.622:2	./.	0/1:14,37:32:51:0.725:2
chr14	20443872	rs4499148	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:58,31:33:90:0.348:2	0/1:33,27:32:60:0.450:2	./.	0/1:56,44:32:100:0.440:2	./.	./.	0/1:51,25:32:76:0.329:2	0/1:3,80:32:83:0.964:2	0/1:59,49:33:108:0.454:2	0/1:5,96:32:101:0.950:2	./.
chr14	20443943	rs4060024	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:67,45:33:112:0.402:2	0/1:24,15:33:39:0.385:2	./.	0/1:75,44:32:120:0.370:2	./.	./.	0/1:56,41:32:97:0.423:2	0/1:6,70:32:76:0.921:2	0/1:67,52:33:119:0.437:2	0/1:4,76:32:80:0.950:2	./.
chr14	20444012	rs3861512	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:82,56:31:138:0.406:2	0/1:38,28:31:66:0.424:2	./.	0/1:82,77:32:159:0.484:2	./.	./.	0/1:56,45:32:101:0.446:2	0/1:3,134:31:137:0.978:2	0/1:72,109:32:181:0.602:2	0/1:55,62:30:117:0.530:2	./.
chr14	20444026	rs3861513	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:78,56:32:134:0.418:2	0/1:41,29:32:70:0.414:2	./.	0/1:87,73:32:160:0.456:2	./.	./.	0/1:60,48:32:108:0.444:2	0/1:3,149:32:152:0.980:2	0/1:73,107:32:180:0.594:2	0/1:54,69:32:123:0.561:2	./.
chr14	20444038	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:120,6:31:126:0.048:2	./.	./.	./.	./.	./.	./.
chr14	20444039	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,6:33:133:0.045:2	./.
chr14	20444193	rs2318556	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:93,86:33:179:0.480:2	0/1:62,48:31:110:0.436:2	./.	0/1:96,84:33:180:0.467:2	./.	./.	0/1:113,72:32:185:0.389:2	0/1:0,163:32:163:1.00:2	0/1:91,98:33:189:0.519:2	0/1:2,175:33:177:0.989:2	./.
chr14	20444441	rs10135246	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:72,52:32:124:0.419:2	0/1:41,40:32:81:0.494:2	./.	0/1:92,92:31:184:0.500:2	./.	./.	0/1:80,69:32:149:0.463:2	0/1:0,158:31:158:1.00:2	0/1:73,69:33:142:0.486:2	0/1:52,61:32:113:0.540:2	./.
chr14	20444490	rs11158071	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:90,87:30:177:0.492:2	0/1:66,59:31:125:0.472:2	0/1:11,13:30:24:0.542:2	0/1:107,82:30:189:0.434:2	0/1:0,189:29:189:1.00:2	0/1:1,185:29:186:0.995:2	0/1:107,86:29:193:0.446:2	./.	0/1:108,79:30:187:0.422:2	./.	0/1:4,182:30:186:0.978:2
chr14	20444588	rs2153466	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:61,56:33:117:0.479:2	0/1:56,30:32:86:0.349:2	./.	0/1:65,59:33:124:0.476:2	./.	./.	0/1:43,55:33:98:0.561:2	0/1:0,124:32:124:1.00:2	0/1:57,73:33:130:0.562:2	0/1:3,105:32:108:0.972:2	./.
chr14	20444607	rs10135467	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:52,50:32:102:0.490:2	0/1:48,24:32:72:0.333:2	./.	0/1:62,54:32:116:0.466:2	./.	./.	0/1:37,49:32:86:0.570:2	0/1:0,118:32:118:1.00:2	0/1:61,74:32:135:0.548:2	0/1:49,47:32:96:0.490:2	./.
chr14	20482471	rs12590785	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:32:88:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,8:32:8:1.00:2	0/1:62,38:31:100:0.380:2	0/1:44,36:31:80:0.450:2	0/1:1,83:31:84:0.988:2	0/1:53,20:32:73:0.274:2	0/1:57,35:32:92:0.380:2	0/1:0,61:32:61:1.00:2	0/1:48,33:31:81:0.407:2	0/1:1,101:32:102:0.990:2
chr14	20482655	rs201416953	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,9:31:171:0.053:2	0/1:112,11:32:123:0.089:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	20502044	rs17277025	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,10:30:14:0.714:2	0/1:9,4:31:13:0.308:2	./.	./.	./.	./.	0/1:11,5:32:16:0.313:2	./.
chr14	20502120	rs17277032	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:19,7:31:26:0.269:2	0/1:20,6:33:26:0.231:2	./.	0/1:21,13:33:34:0.382:2	./.	0/1:13,14:31:27:0.519:2	0/1:24,10:33:34:0.294:2	0/1:14,10:33:24:0.417:2	0/1:1,16:32:17:0.941:2	./.	0/1:13,13:34:26:0.500:2
chr14	20502336	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:32:56:0.071:2	./.	./.	./.	./.
chr14	20502506	rs140037435	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,65:30:121:0.537:2	./.	./.	./.	./.	./.	./.
chr14	20528207	rs1958715	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:29,18:32:47:0.383:2	0/1:16,13:32:29:0.448:2	./.	./.	0/1:20,8:31:28:0.286:2	./.	0/1:18,10:32:28:0.357:2	0/1:32,3:32:35:0.086:2	./.	0/1:18,12:32:30:0.400:2	./.
chr14	20528250	rs45584133	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,24:29:53:0.453:2	./.	./.	0/1:67,18:30:85:0.212:2	./.	0/1:38,33:29:71:0.465:2	./.
chr14	20528321	rs1958716	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:102,91:32:194:0.472:2	0/1:79,71:32:150:0.473:2	./.	./.	0/1:120,76:31:196:0.388:2	./.	0/1:110,84:31:194:0.433:2	0/1:128,64:31:193:0.333:2	./.	0/1:110,81:31:191:0.424:2	./.
chr14	20528359	rs1959630	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,175:32:175:1.00:2	0/1:0,148:32:148:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,178:32:178:1.00:2	0/1:0,177:31:177:1.00:2	0/1:0,176:31:177:1.00:2	0/1:0,176:32:176:1.00:2	0/1:0,167:31:167:1.00:2	0/1:0,182:33:182:1.00:2	0/1:0,181:31:181:1.00:2	0/1:0,177:32:177:1.00:2
chr14	20528362	rs1958717	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:102,78:28:180:0.433:2	0/1:78,75:29:153:0.490:2	./.	./.	0/1:119,67:28:186:0.360:2	./.	0/1:122,62:29:184:0.337:2	0/1:105,68:28:173:0.393:2	./.	0/1:111,79:29:190:0.416:2	./.
chr14	20528505	rs2775253	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:46,49:32:95:0.516:2	0/1:34,28:32:63:0.452:2	./.	./.	./.	./.	0/1:35,32:32:67:0.478:2	./.	./.	./.	./.
chr14	20528528	rs2775254	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:37,44:32:81:0.543:2	0/1:32,23:32:55:0.418:2	./.	./.	./.	./.	0/1:36,21:31:57:0.368:2	./.	./.	./.	./.
chr14	20528558	rs143026565	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,25:30:61:0.410:2	./.	./.	./.	./.	./.	./.
chr14	20528682	rs45585336	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,66:32:139:0.475:2	./.	./.	0/1:71,86:32:157:0.548:2	./.	0/1:63,60:33:123:0.488:2	./.
chr14	20529019	rs1959629	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:27,18:33:45:0.400:2	0/1:11,11:33:22:0.500:2	./.	./.	./.	./.	0/1:22,23:32:45:0.511:2	./.	./.	./.	./.
chr14	20529043	rs1959628	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:42,30:30:72:0.417:2	0/1:12,19:29:31:0.613:2	./.	./.	./.	./.	0/1:31,23:28:54:0.426:2	./.	./.	./.	./.
chr14	20585584	rs61743111	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,63:32:112:0.568:2	./.	./.	./.	./.	./.
chr14	20586042	rs8005245	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,103:31:198:0.520:2	./.	./.	./.	0/1:1,188:33:189:0.995:2	./.	0/1:1,184:32:185:0.995:2
chr14	20586432	rs9323534	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,47:30:95:0.495:2	./.	./.	./.	0/1:1,101:31:102:0.990:2	./.	0/1:1,104:31:105:0.990:2
chr14	20612098	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:123,4:32:127:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr14	20612449	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:31:157:0.025:2	./.	./.	./.	./.
chr14	20665538	rs148846869	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,54:32:130:0.415:2	./.	./.	./.	./.	./.
chr14	20665627	rs45620333	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,52:30:122:0.426:2	./.	./.	./.	./.	./.
chr14	20665640	rs140668031	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,45:30:112:0.402:2	./.	./.	./.	./.	./.
chr14	20665790	rs4981822	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:40,34:32:74:0.459:2	0/1:17,24:31:41:0.585:2	0/1:4,7:31:11:0.636:2	./.	0/1:44,26:30:70:0.371:2	0/1:26,18:29:44:0.409:2	0/1:35,28:31:63:0.444:2	./.	0/1:37,28:31:66:0.431:2	./.	0/1:1,55:31:56:0.982:2
chr14	20665840	rs4981088	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:46,47:31:93:0.505:2	0/1:18,18:31:36:0.500:2	0/1:3,5:31:8:0.625:2	./.	0/1:34,33:31:67:0.493:2	0/1:44,27:30:71:0.380:2	0/1:46,40:30:86:0.465:2	./.	0/1:49,30:32:79:0.380:2	./.	0/1:2,62:31:64:0.969:2
chr14	20665887	rs4981823	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,118:33:118:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,111:33:111:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,112:32:112:1.00:2	0/1:1,110:32:111:0.991:2	0/1:0,127:32:127:1.00:2	0/1:1,112:33:113:0.991:2	0/1:0,103:33:103:1.00:2	0/1:1,92:32:93:0.989:2
chr14	20665898	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:32:116:0.034:2	./.
chr14	20692188	rs12891553	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,23:33:57:0.404:2	0/1:29,20:31:49:0.408:2	./.	0/1:30,23:32:53:0.434:2	0/1:25,19:30:44:0.432:2	./.	0/1:0,37:32:37:1.00:2	0/1:23,22:32:45:0.489:2	0/1:29,17:32:46:0.370:2	0/1:24,25:32:49:0.510:2	./.
chr14	20692291	rs34693535	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,44:31:100:0.440:2	0/1:32,19:31:51:0.373:2	0/1:8,9:32:17:0.529:2	0/1:68,39:31:107:0.364:2	0/1:49,37:31:86:0.430:2	./.	0/1:0,100:31:100:1.00:2	0/1:56,35:31:91:0.385:2	0/1:72,52:32:124:0.419:2	0/1:41,43:32:84:0.512:2	./.
chr14	20692453	rs17211285	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:84,65:32:149:0.436:2	0/1:56,44:32:100:0.440:2	0/1:11,16:32:27:0.593:2	0/1:112,83:31:196:0.426:2	0/1:88,76:31:164:0.463:2	./.	0/1:2,161:31:163:0.988:2	0/1:106,88:31:194:0.454:2	0/1:111,85:32:196:0.434:2	0/1:94,65:32:159:0.409:2	./.
chr14	20692574	rs17277221	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:97,76:33:173:0.439:2	0/1:49,46:33:95:0.484:2	0/1:21,12:31:33:0.364:2	0/1:90,97:33:187:0.519:2	0/1:85,75:31:160:0.469:2	./.	0/1:1,170:32:171:0.994:2	0/1:113,78:32:191:0.408:2	0/1:106,83:32:189:0.439:2	0/1:87,76:32:163:0.466:2	./.
chr14	20692595	rs61993884	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,10:31:27:0.370:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	20692643	rs17277228	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,38:27:92:0.413:2	0/1:27,20:28:47:0.426:2	0/1:4,3:26:7:0.429:2	0/1:55,51:27:106:0.481:2	0/1:34,24:28:58:0.414:2	./.	0/1:0,66:28:66:1.00:2	0/1:51,36:28:87:0.414:2	0/1:60,37:29:97:0.381:2	0/1:33,39:29:72:0.542:2	./.
chr14	20711200	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.	./.	./.
chr14	20711852	rs17277270	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,71:32:73:0.973:2	0/1:0,49:32:49:1.00:2	./.	0/1:0,67:32:67:1.00:2	0/1:34,13:32:47:0.277:2	./.	./.	./.	./.	./.	./.
chr14	20757804	rs3737220	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,59:31:59:1.00:2	0/1:37,43:32:80:0.538:2	./.	./.	./.	./.
chr14	20763652	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.
chr14	20764585	rs1953552	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,44:29:83:0.530:2	0/1:13,18:29:31:0.581:2	0/1:5,7:30:12:0.583:2	0/1:67,43:30:110:0.391:2	0/1:0,57:28:57:1.00:2	./.	./.	0/1:1,97:29:98:0.990:2	0/1:1,83:29:84:0.988:2	0/1:0,98:29:99:1.00:2	0/1:58,47:29:105:0.448:2
chr14	20770036	rs3742945	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,82:29:173:0.474:2	0/1:61,38:29:99:0.384:2	0/1:0,39:29:39:1.00:2	0/1:0,153:30:153:1.00:2	0/1:0,147:29:147:1.00:2	./.	0/1:74,70:31:144:0.486:2	0/1:4,164:29:168:0.976:2	0/1:0,133:30:133:1.00:2	0/1:0,164:29:164:1.00:2	0/1:103,62:29:166:0.376:2
chr14	20784431	rs17242578	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,10:30:13:0.769:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	20815013	rs1713430	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:9,13:32:22:0.591:2	0/1:1,3:33:4:0.750:2	./.	0/1:10,3:33:13:0.231:2	./.	0/1:13,16:32:29:0.552:2	0/1:11,14:33:25:0.560:2	./.	./.	./.	0/1:14,11:33:25:0.440:2
chr14	20823052	rs3093926	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,66:32:149:0.443:2	./.	./.	./.	./.	./.	./.	./.
chr14	20824181	rs3093930	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,38:28:72:0.528:2	0/1:27,18:28:45:0.400:2	0/1:6,6:29:12:0.500:2	0/1:44,32:30:76:0.421:2	0/1:1,60:29:61:0.984:2	0/1:0,85:28:85:1.00:2	./.	0/1:2,102:29:104:0.981:2	0/1:0,91:29:91:1.00:2	0/1:0,59:28:59:1.00:2	0/1:37,50:29:87:0.575:2
chr14	20824776	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:176,4:32:180:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr14	20837033	rs2104978	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,40:29:113:0.354:2	./.	./.	./.	./.	./.
chr14	20837701	rs938886	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,12:33:23:0.522:2	0/1:0,147:32:147:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr14	20841707	rs1713449	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,8:32:15:0.533:2	0/1:0,113:30:113:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr14	20844383	rs2228042	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,84:31:178:0.472:2	./.	./.	./.	./.	./.
chr14	20845521	rs2229101	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,17:31:40:0.425:2	./.	./.	./.	./.	./.
chr14	20846950	rs8022805	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,58:31:111:0.523:2	./.	./.	./.	./.	./.
chr14	20847202	rs938887	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,57:32:57:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr14	20848415	rs34401320	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,77:33:174:0.443:2	0/1:79,69:32:148:0.466:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	20849169	rs2228039	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,13:31:53:0.245:2	./.	./.	./.	./.	./.
chr14	20850093	rs1713456	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,12:28:30:0.414:2	./.	0/1:33,20:29:53:0.377:2	./.	./.	./.	./.	./.
chr14	20852029	rs1760904	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,6:32:6:1.00:2	0/1:0,3:31:3:1.00:2	./.	0/1:0,5:34:5:1.00:2	0/1:2,6:32:8:0.750:2	0/1:0,2:33:2:1.00:2	0/1:1,10:32:11:0.909:2	./.	./.	./.	0/1:0,4:28:4:1.00:2
chr14	20852267	rs2228041	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,52:32:104:0.500:2	./.	./.	./.	./.	./.
chr14	20852817	rs1760903	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,20:32:20:1.00:2	0/1:0,14:30:14:1.00:2	./.	0/1:33,28:31:61:0.459:2	0/1:28,18:31:46:0.391:2	0/1:30,22:31:52:0.423:2	0/1:0,40:30:40:1.00:2	./.	./.	./.	0/1:0,76:32:76:1.00:2
chr14	20854734	rs945011	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:29:22:1.00:2	0/1:0,12:27:12:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,45:29:45:1.00:2	0/1:1,33:30:34:0.971:2	0/1:0,35:31:35:1.00:2	0/1:0,37:28:37:1.00:2	0/1:0,46:29:46:1.00:2	0/1:0,40:30:40:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,36:29:36:1.00:2
chr14	20859205	rs872074	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,50:33:113:0.442:2	0/1:47,26:32:73:0.356:2	./.
chr14	20863677	rs2228036	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,9:30:19:0.474:2	0/1:75,75:30:150:0.500:2	0/1:59,43:29:102:0.422:2	./.	0/1:58,51:31:109:0.468:2	./.	./.	./.	0/1:77,83:31:160:0.519:2
chr14	20864049	rs2228026	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,49:31:90:0.544:2	./.	./.	./.	./.	./.
chr14	20869705	rs17111188	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,30:30:78:0.385:2	0/1:21,11:31:32:0.344:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	20871973	rs2228035	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,28:33:55:0.509:2	./.
chr14	20872029	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,20:31:45:0.444:2	./.	./.	./.	./.	./.
chr14	20872863	rs6413437	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,41:33:87:0.471:2	0/1:28,22:32:50:0.440:2	./.	./.	./.	0/1:66,51:32:117:0.436:2	./.	./.	./.	./.	./.
chr14	20872881	rs1760898	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:47,33:32:80:0.413:2	0/1:29,26:32:55:0.473:2	./.	0/1:75,58:31:133:0.436:2	0/1:89,49:31:138:0.355:2	0/1:67,65:31:132:0.492:2	./.	./.	./.	0/1:49,36:31:85:0.424:2	./.
chr14	20874411	rs61734876	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,11:28:38:0.289:2	./.	./.	./.	./.	./.
chr14	20876189	rs10083536	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,54:31:134:0.403:2	./.	./.	./.	./.	./.
chr14	20876253	rs1760897	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,97:32:99:0.980:2	0/1:1,45:32:46:0.978:2	./.	0/1:52,59:33:111:0.532:2	0/1:70,50:32:120:0.417:2	0/1:71,46:33:117:0.393:2	./.	./.	./.	0/1:0,82:33:82:1.00:2	./.
chr14	20876541	rs145064396	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,15:32:25:0.600:2	0/1:12,4:32:16:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	20897064	rs7145318	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:59,80:32:139:0.576:2	0/1:58,50:32:108:0.463:2	0/1:0,24:31:24:1.00:2	./.	0/1:57,71:32:128:0.555:2	0/1:2,125:31:127:0.984:2	0/1:87,53:32:140:0.379:2	./.	0/1:0,133:33:133:1.00:2	0/1:47,61:32:108:0.565:2	./.
chr14	20897201	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,21:32:41:0.512:2
chr14	20897676	rs1953225	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,11:32:22:0.500:2	./.
chr14	20898308	rs17242648	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	0/1:24,25:32:49:0.510:2	./.	./.
chr14	20898442	rs11160645	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:42,27:32:69:0.391:2	0/1:19,15:33:34:0.441:2	./.	./.	0/1:58,57:32:116:0.496:2	./.	./.	./.	./.	./.	./.
chr14	20916249	rs2275008	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,18:31:18:1.00:2	./.	0/1:49,38:32:87:0.437:2	0/1:1,102:32:103:0.990:2	./.	0/1:78,75:32:153:0.490:2	./.	./.	./.
chr14	20916958	rs938883	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:28,17:31:45:0.378:2	0/1:7,10:32:17:0.588:2	0/1:0,5:32:5:1.00:2	./.	0/1:32,39:32:71:0.549:2	0/1:0,50:32:50:1.00:2	0/1:31,37:33:68:0.544:2	0/1:37,23:33:60:0.383:2	0/1:22,24:34:46:0.522:2	./.	0/1:44,23:32:67:0.343:2
chr14	20920250	rs2275007	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:28,28:31:56:0.500:2	0/1:16,14:30:30:0.467:2	0/1:0,3:33:3:1.00:2	./.	0/1:45,35:29:80:0.438:2	0/1:3,71:31:74:0.959:2	0/1:49,32:32:81:0.395:2	0/1:53,42:32:95:0.442:2	0/1:45,31:33:76:0.408:2	./.	0/1:28,46:30:74:0.622:2
chr14	20924167	rs1048945	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,18:30:37:0.486:2	./.	./.	./.	./.	./.	./.	0/1:15,21:29:36:0.583:2
chr14	20925154	rs1130409	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:33:11:1.00:2	0/1:35,33:33:68:0.485:2	0/1:31,29:32:60:0.483:2	0/1:0,46:33:46:1.00:2	0/1:1,43:31:44:0.977:2	0/1:0,70:32:70:1.00:2	0/1:32,29:34:61:0.475:2	0/1:28,21:33:49:0.429:2	0/1:39,42:32:81:0.519:2
chr14	20925243	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:32:82:0.049:2	./.	./.
chr14	20928359	rs35567022	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,49:31:105:0.467:2	./.	0/1:36,30:32:66:0.455:2	./.
chr14	20940515	rs1049562	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,40:31:84:0.476:2	0/1:26,21:31:47:0.447:2	./.	./.	./.	0/1:64,47:30:111:0.423:2	./.	./.	./.	./.	0/1:81,74:30:155:0.477:2
chr14	20940606	rs1049564	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,25:33:58:0.431:2	0/1:15,28:32:43:0.651:2	./.	./.	./.	0/1:33,28:32:61:0.459:2	./.	./.	./.	./.	0/1:39,33:33:72:0.458:2
chr14	20940626	rs1130650	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,15:31:40:0.375:2	0/1:12,14:29:26:0.538:2	./.	./.	./.	0/1:22,22:31:44:0.500:2	./.	./.	./.	./.	0/1:31,21:32:52:0.404:2
chr14	21024619	rs1243647	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:32:102:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,111:32:111:1.00:2	0/1:2,91:31:93:0.978:2	0/1:43,41:32:84:0.488:2	0/1:53,41:32:94:0.436:2	0/1:47,43:32:90:0.478:2	0/1:0,128:32:128:1.00:2	0/1:0,76:32:76:1.00:2	./.
chr14	21024786	rs12590446	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,147:33:147:1.00:2	0/1:0,124:32:124:1.00:2	0/1:12,10:33:22:0.455:2	0/1:1,182:33:183:0.995:2	0/1:1,175:32:176:0.994:2	0/1:75,90:32:165:0.545:2	0/1:73,93:33:166:0.560:2	0/1:98,98:33:196:0.500:2	0/1:1,166:34:167:0.994:2	0/1:2,161:33:163:0.988:2	./.
chr14	21026773	rs891297	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:32:15:0.533:2	./.	./.	0/1:57,27:30:85:0.321:2	./.	0/1:53,44:32:97:0.454:2	./.	./.	0/1:41,41:32:82:0.500:2
chr14	21052259	rs1429539	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,186:30:186:1.00:2	0/1:1,93:30:94:0.989:2	0/1:17,10:32:27:0.370:2	0/1:191,4:32:195:0.021:2	./.	0/1:94,71:30:165:0.430:2	0/1:91,99:30:190:0.521:2	./.	0/1:71,115:30:186:0.618:2	0/1:74,86:30:160:0.538:2	./.
chr14	21052414	rs35818240	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,89:33:164:0.543:2	0/1:49,54:32:104:0.524:2	./.	./.	./.	./.	./.	./.	0/1:84,86:33:170:0.506:2	0/1:72,66:32:138:0.478:2	./.
chr14	21052487	rs35238496	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,78:30:166:0.470:2	0/1:49,49:30:98:0.500:2	./.	./.	./.	./.	./.	./.	0/1:76,79:31:155:0.510:2	0/1:67,67:30:134:0.500:2	./.
chr14	21058558	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:30:72:0.056:2	./.	./.	./.	./.	./.
chr14	21058902	rs41317318	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,42:31:82:0.512:2	0/1:42,36:31:78:0.462:2	./.	./.	./.	./.	./.	0/1:48,43:31:91:0.473:2
chr14	21108909	rs17277515	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,34:31:103:0.337:2	./.	0/1:89,46:32:138:0.341:2	./.	0/1:41,35:30:81:0.461:2	./.
chr14	21109056	rs191340785	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,47:32:103:0.456:2	./.	./.	./.	./.	./.	./.
chr14	21109141	rs17277522	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,16:30:37:0.444:2	0/1:21,11:32:32:0.344:2	0/1:5,4:31:9:0.444:2	0/1:25,25:32:50:0.500:2	./.	./.	0/1:0,49:31:49:1.00:2	./.	./.	./.	0/1:15,15:33:30:0.500:2
chr14	21109170	rs11628297	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:32:33:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,44:31:44:1.00:2	0/1:1,34:32:35:0.971:2	0/1:0,41:31:41:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,34:31:34:1.00:2
chr14	21109278	rs11627438	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,29:31:73:0.397:2	0/1:19,29:32:48:0.604:2	0/1:10,4:31:14:0.286:2	0/1:60,60:32:120:0.500:2	0/1:1,114:31:115:0.991:2	0/1:0,92:31:92:1.00:2	./.	0/1:3,103:31:106:0.972:2	0/1:0,71:32:71:1.00:2	0/1:0,73:31:73:1.00:2	0/1:41,34:31:75:0.453:2
chr14	21109385	rs11622969	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,42:31:86:0.488:2	0/1:28,25:31:53:0.472:2	0/1:6,4:32:10:0.400:2	0/1:59,36:30:95:0.379:2	0/1:3,93:30:96:0.969:2	0/1:0,88:31:88:1.00:2	./.	0/1:7,93:31:100:0.930:2	0/1:0,88:31:88:1.00:2	0/1:0,60:31:60:1.00:2	0/1:34,27:31:61:0.443:2
chr14	21109671	rs11627574	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,22:31:69:0.319:2	0/1:21,13:32:34:0.382:2	0/1:6,5:32:11:0.455:2	0/1:28,33:32:61:0.541:2	0/1:1,63:33:64:0.984:2	0/1:0,50:32:50:1.00:2	./.	0/1:2,68:33:70:0.971:2	0/1:1,72:33:73:0.986:2	0/1:0,34:33:34:1.00:2	0/1:17,35:32:52:0.673:2
chr14	21109726	rs11622794	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,18:31:48:0.375:2	0/1:13,16:31:29:0.552:2	0/1:2,4:29:6:0.667:2	0/1:28,25:30:53:0.472:2	0/1:1,36:30:37:0.973:2	0/1:0,50:30:50:1.00:2	./.	0/1:1,50:30:51:0.980:2	0/1:2,53:31:55:0.964:2	0/1:0,31:30:31:1.00:2	0/1:19,21:31:40:0.525:2
chr14	21161872	rs375234576	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:32:124:0.032:2	./.	./.	./.
chr14	21162053	rs11701	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,7:27:9:0.778:2	./.	./.	./.	./.	./.	./.	0/1:26,24:31:50:0.480:2	0/1:22,34:27:56:0.607:2
chr14	21167576	rs3748338	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,3:33:23:0.130:2	./.	0/1:8,12:32:20:0.600:2	0/1:13,9:31:22:0.409:2	0/1:20,15:32:35:0.429:2
chr14	21168055	rs3094	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,37:32:37:1.00:2	0/1:0,24:32:24:1.00:2	./.	0/1:25,21:32:46:0.457:2	0/1:20,3:34:23:0.130:2	./.	./.	./.	./.	./.	0/1:24,14:31:38:0.368:2
chr14	21168084	rs11541061	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:33:44:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,3:33:3:1.00:2	0/1:22,25:32:47:0.532:2	0/1:21,6:32:27:0.222:2	0/1:30,33:32:63:0.524:2	./.	./.	./.	./.	0/1:37,29:33:66:0.439:2
chr14	21168133	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:31:108:0.037:2
chr14	21168186	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:33:110:0.036:2	./.
chr14	21215923	rs34552133	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,53:32:54:0.981:2	./.	0/1:1,45:31:46:0.978:2	./.	./.	./.	./.
chr14	21215997	rs11847654	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:35,20:31:55:0.364:2	0/1:14,18:30:32:0.563:2	./.	0/1:28,28:29:56:0.500:2	./.	0/1:29,18:32:47:0.383:2	./.	./.	0/1:27,36:30:63:0.571:2	0/1:25,24:29:49:0.490:2	./.
chr14	21216499	rs10139733	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,40:33:85:0.476:2	0/1:22,14:32:36:0.389:2	0/1:0,8:31:8:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,52:31:52:1.00:2	0/1:60,30:30:90:0.333:2	0/1:2,63:32:65:0.969:2	0/1:52,29:32:81:0.358:2	0/1:0,97:32:97:1.00:2	0/1:0,55:32:55:1.00:2	0/1:58,54:32:112:0.482:2
chr14	21238318	rs3827905	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,24:31:53:0.453:2	0/1:21,15:32:36:0.417:2	0/1:0,12:31:12:1.00:2	0/1:48,30:31:78:0.385:2	0/1:0,62:31:62:1.00:2	0/1:45,27:30:72:0.375:2	0/1:0,80:31:80:1.00:2	0/1:0,100:31:100:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,49:32:49:1.00:2	0/1:57,41:31:98:0.418:2
chr14	21238798	rs3827907	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:32:10:1.00:2	./.	0/1:48,42:32:90:0.467:2	./.	./.	0/1:57,55:32:112:0.491:2	0/1:0,112:33:112:1.00:2	0/1:47,39:32:86:0.453:2	0/1:54,46:33:100:0.460:2
chr14	21239007	rs45570443	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:33:96:0.042:2	./.
chr14	21250124	rs1045922	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:62,79:32:141:0.560:2	0/1:32,37:32:69:0.536:2	./.	0/1:0,126:32:126:1.00:2	./.	./.	./.	0/1:91,72:32:163:0.442:2	0/1:70,70:34:140:0.500:2	0/1:60,53:33:113:0.469:2	0/1:80,67:33:147:0.456:2
chr14	21250212	rs34972223	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:55,52:29:107:0.486:2	0/1:30,34:29:64:0.531:2	./.	0/1:63,61:31:124:0.492:2	./.	./.	./.	0/1:84,72:29:156:0.462:2	./.	./.	./.
chr14	21250366	rs7156801	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,91:29:91:1.00:2	0/1:0,48:28:48:1.00:2	0/1:0,16:28:16:1.00:2	0/1:0,73:29:73:1.00:2	0/1:0,57:29:57:1.00:2	0/1:0,98:29:98:1.00:2	0/1:0,81:29:81:1.00:2	0/1:0,85:28:85:1.00:2	0/1:0,88:29:88:1.00:2	0/1:0,83:28:83:1.00:2	0/1:0,131:28:131:1.00:2
chr14	21360216	rs2073342	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,29:33:81:0.358:2	0/1:26,8:33:34:0.235:2	0/1:11,6:31:17:0.353:2	0/1:112,4:30:116:0.034:2	0/1:60,41:32:101:0.406:2	0/1:1,73:32:74:0.986:2	0/1:0,64:33:64:1.00:2	0/1:47,41:32:88:0.466:2	0/1:54,49:33:103:0.476:2	0/1:54,45:33:99:0.455:2	./.
chr14	21360344	rs2233860	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:35,40:32:75:0.533:2	0/1:18,30:33:48:0.625:2	./.	./.	0/1:28,38:31:66:0.576:2	./.	./.	0/1:53,56:32:109:0.514:2	0/1:35,49:32:84:0.583:2	./.	0/1:0,90:32:90:1.00:2
chr14	21424077	rs185582106	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,37:31:89:0.416:2	./.	./.	./.	./.	./.	./.
chr14	21464055	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,3:35:74:0.041:2	./.	./.	./.
chr14	21467913	rs2234632	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,96:30:96:1.00:2	0/1:1,62:29:63:0.984:2	./.	0/1:2,151:31:153:0.987:2	0/1:3,102:30:105:0.971:2	0/1:0,176:30:176:1.00:2	0/1:103,51:30:154:0.331:2	./.	0/1:0,157:31:157:1.00:2	0/1:92,64:30:158:0.410:2	0/1:0,160:30:160:1.00:2
chr14	21469151	rs2234636	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,53:33:110:0.482:2	0/1:21,41:33:62:0.661:2	./.	0/1:41,45:33:86:0.523:2	./.	0/1:48,49:34:97:0.505:2	0/1:36,39:33:75:0.520:2	./.
chr14	21486137	rs1243445	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:33:52:1.00:2	0/1:0,35:33:35:1.00:2	0/1:4,7:33:11:0.636:2	0/1:0,102:33:102:1.00:2	./.	0/1:0,102:32:102:1.00:2	0/1:0,126:32:126:1.00:2	0/1:0,134:32:134:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,81:33:81:1.00:2
chr14	21486216	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:32:118:0.034:2	./.	./.	./.
chr14	21500121	rs9624	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,54:32:130:0.415:2	./.	./.	./.	./.
chr14	21502345	rs8007176	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,51:33:104:0.490:2	0/1:25,13:33:38:0.342:2	0/1:4,10:32:14:0.714:2	0/1:0,79:32:79:1.00:2	0/1:0,67:32:68:1.00:2	./.	0/1:42,30:33:72:0.417:2	0/1:36,37:31:73:0.507:2	0/1:36,42:33:78:0.538:2	./.	0/1:0,96:32:96:1.00:2
chr14	21511458	rs1263872	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,41:32:42:0.976:2	0/1:0,17:32:17:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,53:32:53:1.00:2
chr14	21511497	rs1243469	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:30:26:1.00:2	0/1:0,19:29:19:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,24:28:24:1.00:2	0/1:0,29:29:29:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,40:30:40:1.00:2
chr14	21511789	rs2282036	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,65:32:140:0.464:2	0/1:73,64:32:137:0.467:2	0/1:78,60:32:138:0.435:2	./.	0/1:5,135:32:140:0.964:2	0/1:76,83:33:159:0.522:2	0/1:53,50:32:103:0.485:2	0/1:107,75:32:182:0.412:2
chr14	21526079	rs12437266	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,19:32:50:0.388:2	0/1:9,14:33:23:0.609:2	0/1:0,15:32:15:1.00:2	0/1:0,51:32:51:1.00:2	0/1:29,19:30:48:0.396:2	0/1:18,23:31:41:0.561:2	0/1:0,50:32:50:1.00:2	0/1:30,16:31:46:0.348:2	0/1:40,20:33:60:0.333:2	0/1:0,50:32:52:1.00:2	0/1:31,22:33:53:0.415:2
chr14	21541293	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,4:33:82:0.049:2	./.	./.	./.	./.	./.	./.	./.
chr14	21542753	rs1243472	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:33:6:0.667:2	./.	./.
chr14	21542766	rs12889267	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	0/1:2,2:35:4:0.500:2
chr14	21549814	rs61741563	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,7:27:10:0.700:2	./.	./.	./.
chr14	21549893	rs7143633	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,6:31:6:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,2:34:2:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,8:30:8:1.00:2	./.	0/1:0,14:31:14:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,5:34:5:1.00:2	0/1:0,4:35:4:1.00:2
chr14	21550499	rs61746329	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,31:30:59:0.525:2	./.	./.	./.
chr14	21550547	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,7:33:23:0.304:2	./.	./.	./.	./.
chr14	21551058	rs1958395	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,19:32:51:0.373:2	0/1:20,7:31:27:0.259:2	0/1:4,4:32:8:0.500:2	0/1:0,69:31:69:1.00:2	0/1:0,37:29:38:1.00:2	./.	0/1:40,35:30:75:0.467:2	0/1:0,49:31:49:1.00:2	0/1:37,25:31:62:0.403:2	0/1:24,20:30:44:0.455:2	0/1:42,23:32:65:0.354:2
chr14	21551069	rs1958396	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:34:45:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,6:34:6:1.00:2	0/1:0,54:33:54:1.00:2	0/1:0,27:32:27:1.00:2	0/1:1,41:33:42:0.976:2	0/1:0,56:33:56:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,50:34:50:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,54:34:54:1.00:2
chr14	21552001	rs138810738	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,15:32:27:0.556:2	./.	./.
chr14	21553004	rs749731	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,44:31:95:0.463:2	./.	./.	./.
chr14	21553057	rs943992	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,63:29:125:0.504:2	./.	./.	./.
chr14	21557021	rs74584322	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,52:31:134:0.388:2	./.	./.	./.
chr14	21570273	rs745696	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,50:33:51:0.980:2	0/1:0,35:33:35:1.00:2	0/1:6,6:31:12:0.500:2	0/1:2,56:33:58:0.966:2	0/1:1,58:33:59:0.983:2	./.	0/1:0,50:33:50:1.00:2	0/1:47,38:32:85:0.447:2	0/1:0,83:33:83:1.00:2	0/1:24,15:33:39:0.385:2	0/1:28,19:33:47:0.404:2
chr14	21570614	rs4982408	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,159:29:162:0.988:2	0/1:0,90:29:90:1.00:2	0/1:0,20:30:20:1.00:2	0/1:3,178:30:181:0.983:2	0/1:1,180:29:181:0.994:2	0/1:96,88:29:184:0.478:2	0/1:0,182:30:182:1.00:2	0/1:95,88:29:183:0.481:2	0/1:0,171:30:171:1.00:2	0/1:0,176:29:176:1.00:2	0/1:87,85:30:172:0.494:2
chr14	21623290	rs7145814	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,82:29:83:0.988:2	0/1:0,52:28:52:1.00:2	0/1:0,10:30:10:1.00:2	0/1:67,37:28:104:0.356:2	0/1:0,109:28:109:1.00:2	0/1:3,119:29:122:0.975:2	0/1:3,128:29:131:0.977:2	0/1:4,113:28:117:0.966:2	0/1:68,43:28:111:0.387:2	0/1:44,35:29:80:0.443:2	0/1:3,108:29:111:0.973:2
chr14	21623303	rs45603634	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,55:30:122:0.451:2	./.	./.	./.	./.	./.
chr14	21623489	rs45462402	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,42:31:85:0.500:2	0/1:43,46:31:89:0.517:2	./.	0/1:96,4:33:100:0.040:2	0/1:52,33:30:85:0.388:2	./.	./.	0/1:31,44:31:75:0.587:2
chr14	21623648	rs7161544	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,54:31:54:1.00:2	0/1:1,21:32:22:0.955:2	0/1:2,4:31:6:0.667:2	./.	./.	0/1:51,24:29:75:0.320:2	0/1:2,63:30:65:0.969:2	0/1:35,26:31:61:0.426:2	0/1:33,25:31:58:0.431:2	0/1:27,27:29:54:0.500:2	./.
chr14	21623836	rs4982419	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,66:32:66:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,15:31:15:1.00:2	./.	0/1:1,107:31:108:0.991:2	0/1:1,149:32:150:0.993:2	0/1:2,124:32:126:0.984:2	0/1:1,122:31:123:0.992:2	0/1:62,45:32:107:0.421:2	0/1:44,45:31:89:0.506:2	0/1:54,52:32:106:0.491:2
chr14	21624112	rs147125324	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,33:32:48:0.688:2	./.	./.	./.	./.	./.	./.
chr14	21680030	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:34:42:0.095:2	./.	./.	./.	./.
chr14	21699173	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,4:32:48:0.083:2	./.	./.	./.	./.	./.	./.	./.
chr14	21699191	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,4:29:45:0.089:2	./.	./.	./.	./.	./.	./.	./.
chr14	21702190	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:33:68:0.059:2	./.
chr14	21769193	rs1040904	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:4,4:31:8:0.500:2	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	0/1:8,3:31:11:0.273:2	./.	./.	./.	./.
chr14	21770681	rs17792599	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:29:6:0.500:2	./.	0/1:37,25:30:62:0.403:2	0/1:43,38:30:81:0.469:2	0/1:23,33:29:56:0.589:2	0/1:40,38:29:78:0.487:2	0/1:46,50:29:96:0.521:2	0/1:35,35:28:70:0.500:2	0/1:45,56:29:101:0.554:2
chr14	21770730	rs6571751	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:31:52:1.00:2	0/1:0,52:32:52:1.00:2	0/1:1,3:33:4:0.750:2	0/1:0,72:31:72:1.00:2	./.	0/1:37,49:31:87:0.570:2	0/1:44,20:31:64:0.313:2	0/1:39,32:32:71:0.451:2	0/1:80,46:31:126:0.365:2	0/1:33,33:32:66:0.500:2	./.
chr14	21778792	rs1957414	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,105:33:107:0.981:2	0/1:0,70:33:70:1.00:2	0/1:9,4:34:13:0.308:2	./.	0/1:52,21:32:73:0.288:2	./.	0/1:48,59:32:107:0.551:2	0/1:69,70:32:139:0.504:2	./.	./.	./.
chr14	21790040	rs10151259	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,32:31:33:0.970:2	./.	0/1:16,13:29:29:0.448:2	./.	./.	0/1:33,26:33:59:0.441:2	0/1:30,24:30:54:0.444:2	./.
chr14	21792811	rs9322965	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,75:32:75:1.00:2	./.	0/1:32,28:31:60:0.467:2	./.	./.	0/1:47,47:32:94:0.500:2	0/1:22,22:32:44:0.500:2	./.
chr14	21796784	rs3748361	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,9:31:20:0.450:2	./.	./.	./.	0/1:19,22:33:41:0.537:2	0/1:14,7:33:21:0.333:2	./.
chr14	21819337	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:117,4:31:121:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr14	21826536	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:32:49:0.082:2
chr14	21826545	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:32:46:0.087:2
chr14	21826547	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:30:47:0.085:2
chr14	21829129	rs3762158	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,111:32:111:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,14:32:14:1.00:2	0/1:1,127:33:128:0.992:2	0/1:0,88:32:88:1.00:2	0/1:0,102:32:103:1.00:2	0/1:1,87:32:88:0.989:2	0/1:0,112:32:112:1.00:2	0/1:0,101:33:101:1.00:2	0/1:0,82:33:82:1.00:2	0/1:76,80:33:157:0.513:2
chr14	21831052	rs10138699	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:29:63:1.00:2	0/1:0,40:29:40:1.00:2	0/1:0,13:29:13:1.00:2	0/1:1,42:29:43:0.977:2	0/1:1,27:27:28:0.964:2	0/1:1,60:29:61:0.984:2	0/1:0,48:29:48:1.00:2	0/1:0,75:29:75:1.00:2	0/1:0,75:29:75:1.00:2	0/1:1,66:30:67:0.985:2	0/1:49,28:28:78:0.364:2
chr14	21831419	rs61746713	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,23:32:38:0.605:2	./.	0/1:19,14:33:33:0.424:2	./.
chr14	21833012	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:33:147:0.027:2	./.	./.	./.
chr14	21833076	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:125,4:32:129:0.031:2	./.	./.	./.	0/1:92,4:34:96:0.042:2	./.	./.	./.
chr14	21833080	rs373401934	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:119,4:32:123:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr14	21840169	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,4:31:80:0.050:2	./.	./.	./.	./.	./.	./.
chr14	21852050	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,5:30:158:0.032:2	./.	./.	./.
chr14	21852092	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:33:91:0.044:2	./.	./.	./.
chr14	21871653	rs8022395	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:30:38:1.00:2	0/1:0,35:30:36:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,42:30:42:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,57:31:57:1.00:2	0/1:29,34:32:63:0.540:2
chr14	21882544	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:36:151:0.026:2	./.	./.
chr14	21896059	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:175,5:31:181:0.028:2	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:30:194:0.026:2	./.	0/1:181,7:27:188:0.037:2
chr14	21945058	rs185616664	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,86:31:87:0.989:2	./.	0/1:38,41:31:79:0.519:2	./.	./.	./.	./.	./.
chr14	21945415	rs2282046	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,13:33:13:1.00:2	0/1:2,87:32:89:0.978:2	0/1:104,53:33:157:0.338:2	0/1:0,82:32:82:1.00:2	0/1:3,138:33:141:0.979:2	0/1:100,59:33:159:0.371:2	0/1:74,37:31:112:0.333:2	0/1:47,35:31:82:0.427:2	./.
chr14	21957465	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,5:31:94:0.053:2	./.	./.	./.	./.	./.	./.
chr14	21960727	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,4:32:28:0.143:2	./.	./.	./.	./.	./.	./.	./.
chr14	21960816	rs1060722	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,54:33:54:1.00:2	0/1:0,36:32:36:1.00:2	./.	./.	0/1:19,25:32:44:0.568:2	./.	./.	0/1:24,28:33:52:0.538:2	0/1:25,25:33:50:0.500:2	0/1:20,17:33:37:0.459:2	0/1:4,63:33:67:0.940:2
chr14	21960969	rs7617	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,85:33:85:1.00:2	0/1:0,50:32:50:1.00:2	./.	./.	0/1:30,41:32:71:0.577:2	./.	./.	0/1:66,52:32:118:0.441:2	0/1:44,34:33:78:0.436:2	0/1:45,46:32:91:0.505:2	0/1:2,92:33:95:0.979:2
chr14	21967438	rs3168880	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	0/1:27,39:31:66:0.591:2	0/1:31,39:32:70:0.557:2	0/1:37,35:32:72:0.486:2	0/1:25,20:33:45:0.444:2	0/1:24,12:32:36:0.333:2	./.
chr14	21967916	rs1139130	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:33:7:1.00:2	0/1:0,80:32:80:1.00:2	0/1:29,19:31:48:0.396:2	0/1:2,55:31:57:0.965:2	0/1:0,58:32:58:1.00:2	0/1:50,40:32:91:0.444:2	0/1:48,36:33:84:0.429:2	0/1:31,12:29:43:0.279:2	./.
chr14	21991626	rs1263810	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,28:29:76:0.368:2	./.	./.	./.	./.	0/1:16,30:28:46:0.652:2	0/1:25,35:29:60:0.583:2
chr14	21993498	rs1263811	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:30:36:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,5:28:5:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,34:30:34:1.00:2	./.	0/1:0,36:31:36:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,19:31:19:1.00:2	0/1:13,18:30:31:0.581:2
chr14	21993638	rs2242527	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,8:32:17:0.471:2	./.	./.	./.	./.	0/1:94,95:32:189:0.503:2	./.	0/1:84,70:32:154:0.455:2	./.
chr14	22038125	rs34162196	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,30:31:87:0.345:2	./.	./.	./.
chr14	22038162	rs17197261	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,20:30:51:0.392:2	./.	./.	./.	0/1:1,82:30:83:0.988:2	0/1:35,32:30:67:0.478:2	0/1:42,31:30:73:0.425:2
chr14	22038188	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:32:107:0.037:2	./.	./.	./.	./.
chr14	22038210	rs17792766	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,50:31:115:0.435:2	./.	./.	./.	0/1:46,37:31:83:0.446:2
chr14	22038450	rs11626669	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,34:29:73:0.466:2	0/1:17,16:32:33:0.485:2	0/1:0,9:30:9:1.00:2	0/1:46,37:30:83:0.446:2	0/1:1,49:31:50:0.980:2	0/1:29,32:31:62:0.525:2	./.	0/1:32,35:30:67:0.522:2	0/1:0,58:31:58:1.00:2	0/1:30,32:32:62:0.516:2	0/1:29,46:30:75:0.613:2
chr14	22038525	rs11626693	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,62:31:117:0.530:2	0/1:38,26:30:64:0.406:2	./.	./.	0/1:52,43:31:95:0.453:2	./.	./.	./.
chr14	22038562	rs45612332	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,59:32:135:0.440:2
chr14	22038659	rs17792778	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,52:32:110:0.473:2	0/1:37,30:32:67:0.448:2	0/1:0,17:33:17:1.00:2	0/1:0,131:32:132:1.00:2	0/1:3,140:32:143:0.979:2	0/1:68,68:32:136:0.500:2	0/1:93,71:32:166:0.433:2	0/1:74,77:32:151:0.510:2	0/1:0,130:32:130:1.00:2	0/1:66,49:32:115:0.426:2	0/1:2,114:31:116:0.983:2
chr14	22102168	rs200987677	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,5:33:88:0.057:2	./.	./.	./.	./.	./.	./.
chr14	22102374	rs12894405	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:123,65:29:188:0.346:2	./.	0/1:135,61:30:196:0.311:2	./.	0/1:127,72:30:199:0.362:2	./.	0/1:101,89:30:191:0.468:2	0/1:130,12:32:142:0.085:2
chr14	22102439	rs35963889	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:126,67:32:193:0.347:2	0/1:193,4:33:197:0.020:2	0/1:127,55:33:182:0.302:2	./.	0/1:124,69:32:193:0.358:2	./.	./.	0/1:144,37:30:181:0.204:2
chr14	22102592	rs10138694	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:127,26:31:153:0.170:2	./.	0/1:155,17:31:172:0.099:2	./.	0/1:156,26:30:182:0.143:2	./.	0/1:124,25:29:150:0.168:2	0/1:112,20:30:132:0.152:2
chr14	22102612	rs10138704	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:125,33:31:158:0.209:2	./.	0/1:151,22:32:173:0.127:2	./.	0/1:153,30:31:183:0.164:2	./.	0/1:125,21:32:146:0.144:2	0/1:118,26:31:144:0.181:2
chr14	22102745	rs41314525	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,81:32:164:0.494:2	./.	./.	./.	./.	0/1:72,58:32:131:0.446:2
chr14	22102800	rs10146821	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,67:32:153:0.438:2	./.
chr14	22102842	rs149623062	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,72:29:183:0.393:2	./.	./.	./.	./.	./.
chr14	22133416	rs12717305	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,6:30:19:0.316:2	0/1:0,132:30:132:1.00:2	0/1:69,46:28:115:0.400:2	0/1:2,111:29:113:0.982:2	0/1:74,64:29:138:0.464:2	0/1:91,71:29:162:0.438:2	./.	0/1:63,55:29:118:0.466:2	0/1:2,152:29:154:0.987:2
chr14	22133504	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:33:174:0.023:2	./.	./.
chr14	22133648	rs2874103	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,16:30:23:0.696:2	0/1:2,182:30:184:0.989:2	0/1:107,90:30:197:0.457:2	0/1:0,195:30:195:1.00:2	0/1:1,186:31:187:0.995:2	0/1:2,175:31:177:0.989:2	0/1:0,191:32:191:1.00:2	0/1:0,190:31:190:1.00:2	0/1:5,176:31:181:0.972:2
chr14	22133997	rs970382	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,6:30:20:0.300:2	0/1:0,142:30:142:1.00:2	0/1:82,48:30:130:0.369:2	0/1:0,136:30:136:1.00:2	0/1:1,135:30:136:0.993:2	0/1:1,146:30:148:0.993:2	0/1:0,147:31:147:1.00:2	0/1:0,111:30:111:1.00:2	0/1:0,156:30:156:1.00:2
chr14	22134018	rs61732411	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,4:31:16:0.250:2	0/1:56,72:31:128:0.563:2	0/1:66,37:31:103:0.359:2	0/1:53,75:31:128:0.586:2	0/1:57,58:32:115:0.504:2	./.	./.	./.	0/1:78,52:31:130:0.400:2
chr14	22538969	rs368457737	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,22:33:65:0.344:2	0/1:16,17:32:33:0.515:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	22997524	rs227024	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,93:32:94:0.989:2	0/1:3,53:32:56:0.946:2	0/1:0,7:33:7:1.00:2	0/1:35,49:33:84:0.583:2	0/1:26,27:32:53:0.509:2	./.	0/1:0,66:32:66:1.00:2	0/1:47,48:32:95:0.505:2	0/1:58,54:33:113:0.482:2	0/1:1,83:32:84:0.988:2	0/1:51,60:32:111:0.541:2
chr14	23016457	rs56298757	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:33:15:0.400:2	./.	./.	./.	./.	./.	./.	./.	0/1:45,45:33:90:0.500:2
chr14	23044002	rs7621	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,74:32:76:0.974:2	0/1:0,31:32:31:1.00:2	0/1:3,3:32:6:0.500:2	0/1:56,33:31:89:0.371:2	0/1:0,51:31:51:1.00:2	0/1:1,78:30:79:0.987:2	0/1:34,13:31:47:0.277:2	0/1:0,62:32:62:1.00:2	0/1:1,100:32:101:0.990:2	0/1:34,34:31:68:0.500:2	0/1:53,48:32:101:0.475:2
chr14	23044004	rs1051154	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,33:31:91:0.363:2	./.	./.	./.	./.	./.	./.	./.
chr14	23235808	rs1957374	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,41:29:75:0.547:2	0/1:22,24:31:46:0.522:2	./.	0/1:40,43:29:83:0.518:2	0/1:55,36:29:91:0.396:2	./.	0/1:39,33:29:72:0.458:2	0/1:41,51:29:92:0.554:2	./.	0/1:62,25:30:87:0.287:2	0/1:0,120:29:120:1.00:2
chr14	23236524	rs8572	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,28:30:28:1.00:2	0/1:0,20:30:20:1.00:2	./.	0/1:0,53:29:53:1.00:2	0/1:0,32:29:32:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,60:29:60:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,38:29:39:1.00:2
chr14	23240328	rs8786	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:40,51:33:91:0.560:2	0/1:28,22:32:50:0.440:2	./.	./.	0/1:27,27:31:54:0.500:2	0/1:1,75:32:76:0.987:2	0/1:32,29:32:61:0.475:2	0/1:65,34:32:99:0.343:2	0/1:0,71:33:71:1.00:2	0/1:39,46:33:85:0.541:2	./.
chr14	23242828	rs1061040	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,109:32:110:0.991:2	0/1:0,63:32:63:1.00:2	0/1:6,7:32:13:0.538:2	0/1:2,135:32:137:0.985:2	0/1:0,93:32:93:1.00:2	0/1:0,168:32:168:1.00:2	0/1:3,115:32:118:0.975:2	0/1:3,172:32:175:0.983:2	0/1:0,148:33:148:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,177:33:177:1.00:2
chr14	23248112	rs1805061	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,24:33:63:0.381:2	0/1:24,24:33:48:0.500:2	./.	./.	./.	0/1:42,32:32:74:0.432:2	./.	./.	0/1:45,48:34:94:0.516:2	./.	./.
chr14	23282110	rs8018462	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,21:34:21:1.00:2	0/1:0,5:33:5:1.00:2	./.	0/1:0,29:33:29:1.00:2	./.	0/1:10,21:32:31:0.677:2	0/1:0,37:32:37:1.00:2	0/1:0,33:32:34:1.00:2	./.	./.	0/1:4,9:32:13:0.692:2
chr14	23282152	rs8016634	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,5:34:75:0.067:2	./.	./.	./.
chr14	23282374	rs139776370	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,21:31:27:0.778:2	./.
chr14	23282449	rs1805059	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:31:41:1.00:2	0/1:0,30:31:30:1.00:2	0/1:5,3:33:8:0.375:2	0/1:1,51:32:52:0.981:2	./.	0/1:30,31:31:64:0.508:2	0/1:0,82:32:83:1.00:2	0/1:0,46:31:46:1.00:2	./.	0/1:34,18:32:52:0.346:2	0/1:26,21:32:47:0.447:2
chr14	23282462	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,3:34:62:0.048:2	./.	./.
chr14	23299135	rs1135641	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,21:31:42:0.500:2	./.	0/1:0,30:30:30:1.00:2	0/1:22,18:30:40:0.450:2	0/1:0,47:31:47:1.00:2	0/1:18,13:30:31:0.419:2	0/1:16,8:30:24:0.333:2	./.
chr14	23299286	rs4982685	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:33:37:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,37:32:37:1.00:2	./.	0/1:0,41:31:41:1.00:2	0/1:1,28:31:29:0.966:2	0/1:0,49:32:49:1.00:2	0/1:25,24:33:49:0.490:2	0/1:0,30:32:30:1.00:2	0/1:26,11:31:37:0.297:2
chr14	23302706	rs142727241	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:10,18:29:28:0.643:2	0/1:8,11:31:19:0.579:2	./.	./.	./.	./.	0/1:28,10:31:38:0.263:2	./.	./.	./.	./.
chr14	23306048	rs1042703	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,15:32:15:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,14:31:14:1.00:2	./.	0/1:0,31:29:31:1.00:2	0/1:2,9:31:11:0.818:2	0/1:0,20:30:20:1.00:2	0/1:5,7:32:12:0.583:2	0/1:0,8:29:8:1.00:2	0/1:1,4:33:5:0.800:2
chr14	23312554	rs2236302	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,53:30:97:0.546:2	./.	./.	./.	./.
chr14	23312594	rs1042704	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.	./.	0/1:23,27:31:50:0.540:2	./.	./.	0/1:26,21:32:47:0.447:2	0/1:29,14:29:43:0.326:2	./.
chr14	23312923	rs2236307	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,16:29:38:0.421:2	./.	0/1:25,11:32:36:0.306:2	./.	./.	./.
chr14	23354066	rs8014119	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,33:33:57:0.579:2	./.	./.	./.	./.	./.	./.
chr14	23371055	rs1127066	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,32:32:82:0.390:2	./.	./.	./.	./.	./.	0/1:29,25:33:54:0.463:2	./.
chr14	23371262	rs375768100	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,16:32:25:0.640:2	./.	./.	./.	./.	./.
chr14	23374340	rs183387471	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:30:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	23374435	rs2295680	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,24:32:50:0.480:2	0/1:12,14:32:26:0.538:2	0/1:0,7:31:7:1.00:2	0/1:78,4:30:82:0.049:2	0/1:28,38:31:66:0.576:2	0/1:28,28:30:56:0.500:2	0/1:0,73:31:73:1.00:2	0/1:45,34:31:79:0.430:2	0/1:38,35:32:73:0.479:2	0/1:25,22:32:47:0.468:2	0/1:0,67:31:67:1.00:2
chr14	23374862	rs2295682	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:27,16:32:43:0.372:2	0/1:21,15:32:36:0.417:2	0/1:0,5:31:5:1.00:2	./.	0/1:12,4:32:16:0.250:2	0/1:34,21:31:55:0.382:2	0/1:0,22:32:22:1.00:2	0/1:25,14:32:39:0.359:2	0/1:35,23:33:58:0.397:2	0/1:28,18:31:46:0.391:2	0/1:0,66:32:66:1.00:2
chr14	23451345	rs45543740	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:10,7:33:17:0.412:2	./.	./.	0/1:10,7:32:17:0.412:2	./.	./.	./.	./.	./.	./.	./.
chr14	23456587	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:164,4:32:168:0.024:2	./.	./.	./.	./.	./.	./.
chr14	23467664	rs3829409	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,26:32:40:0.650:2	./.	./.	./.	./.	./.	./.
chr14	23495421	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:31:123:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	23504021	rs11543947	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,22:30:44:0.500:2	./.
chr14	23512343	rs57362684	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:31:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:31:56:0.071:2
chr14	23512430	rs78162644	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,13:30:26:0.520:2	0/1:38,16:30:54:0.296:2
chr14	23512466	rs72684308	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,33:32:69:0.478:2	./.	./.	0/1:50,39:32:89:0.438:2	./.	0/1:0,65:33:65:1.00:2	./.	./.
chr14	23512811	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,46:31:108:0.426:2
chr14	23512922	rs11628336	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,6:29:12:0.500:2	0/1:56,30:32:86:0.349:2	0/1:40,26:31:67:0.394:2	./.	0/1:44,22:31:66:0.333:2	./.	0/1:0,85:32:85:1.00:2	0/1:46,36:31:82:0.439:2	0/1:40,22:31:62:0.355:2
chr14	23517614	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:33:35:0.114:2	./.	./.
chr14	23518918	rs11623976	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,34:32:62:0.548:2	./.	./.	0/1:28,25:31:53:0.472:2	./.	0/1:0,58:32:58:1.00:2	./.	0/1:29,24:31:53:0.453:2
chr14	23519131	rs116261083	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,45:31:116:0.388:2	./.	./.	./.	./.	./.	./.
chr14	23523440	rs147423144	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,9:30:22:0.409:2	./.
chr14	23530622	rs60168438	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,38:26:61:0.623:2	0/1:15,8:29:23:0.348:2	./.	./.	./.	0/1:26,38:28:64:0.594:2	0/1:58,19:27:77:0.247:2	0/1:66,34:25:100:0.340:2	./.	./.	0/1:31,14:27:45:0.311:2
chr14	23531437	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:29:9:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	23532193	rs114105349	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,40:31:75:0.533:2	./.	./.	./.	./.
chr14	23549319	rs1885097	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:34,27:32:61:0.443:2	0/1:12,17:32:29:0.586:2	0/1:3,3:31:6:0.500:2	./.	./.	0/1:0,68:32:68:1.00:2	0/1:25,32:32:57:0.561:2	0/1:36,40:31:76:0.526:2	0/1:97,5:36:102:0.049:2	./.	0/1:37,47:32:84:0.560:2
chr14	23549379	rs941719	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,98:32:98:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,78:32:79:1.00:2	0/1:0,112:32:113:1.00:2
chr14	23549380	rs1885098	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,49:32:86:0.570:2	./.	./.	./.	./.
chr14	23549383	rs45510791	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:31:12:0.583:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	23549785	rs3811182	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:94,67:33:161:0.416:2	0/1:75,60:33:135:0.444:2	0/1:19,7:33:26:0.269:2	./.	./.	0/1:2,180:33:182:0.989:2	0/1:93,59:32:152:0.388:2	0/1:113,82:33:196:0.421:2	./.	./.	0/1:110,75:32:187:0.405:2
chr14	23567369	rs12400	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,16:32:48:0.333:2	0/1:19,15:32:34:0.441:2	./.	./.	./.	0/1:0,50:31:50:1.00:2	./.	0/1:25,34:31:59:0.576:2	./.	./.	0/1:25,48:32:74:0.658:2
chr14	23567761	rs3200051	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,17:29:46:0.370:2	./.	./.	./.	./.
chr14	23567774	rs6736	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,51:31:101:0.505:2	0/1:24,38:31:62:0.613:2	0/1:11,5:29:16:0.313:2	0/1:0,89:30:89:1.00:2	0/1:0,61:30:62:1.00:2	./.	0/1:16,28:31:44:0.636:2	0/1:48,40:31:88:0.455:2	0/1:1,127:31:128:0.992:2	0/1:2,62:31:64:0.969:2	0/1:61,68:31:129:0.527:2
chr14	23567991	rs45465198	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,7:32:10:0.700:2	./.	./.	./.	./.
chr14	23568018	rs2180396	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,9:30:9:1.00:2	0/1:0,3:31:3:1.00:2	./.	0/1:0,8:30:8:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,7:31:7:1.00:2	./.	0/1:0,8:31:8:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,4:31:4:1.00:2
chr14	23568286	rs3742485	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,16:31:30:0.533:2	./.	./.	./.	./.
chr14	23568937	rs56177889	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,6:30:26:0.231:2	./.	./.	./.	./.
chr14	23569026	rs56354304	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,13:32:21:0.619:2	./.	./.	./.	0/1:17,16:33:33:0.485:2	./.	./.	./.	./.
chr14	23569106	rs8007215	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:31:61:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,92:30:92:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,95:30:95:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,119:30:119:1.00:2	0/1:1,119:31:120:0.992:2	0/1:0,78:31:78:1.00:2	0/1:2,90:31:92:0.978:2
chr14	23569360	rs8007589	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,4:32:4:1.00:2	./.	./.	0/1:0,3:34:3:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,5:32:5:1.00:2	./.	0/1:0,2:33:2:1.00:2	0/1:0,3:35:3:1.00:2	0/1:0,8:34:8:1.00:2
chr14	23598952	rs7157021	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,43:29:76:0.566:2	0/1:29,30:30:59:0.508:2	0/1:5,3:31:8:0.375:2	0/1:66,69:29:135:0.511:2	0/1:81,69:29:150:0.460:2	./.	./.	0/1:69,102:30:171:0.596:2	0/1:55,45:31:100:0.450:2	0/1:36,41:29:77:0.532:2	0/1:49,28:28:77:0.364:2
chr14	23652004	rs1884545	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:31:7:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	23712529	rs377083748	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,21:11:142:0.148:2	./.	0/1:128,31:8:159:0.195:2	0/1:127,24:10:151:0.159:2	./.	0/1:123,33:10:156:0.212:2
chr14	23744932	rs1055061	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,24:31:75:0.320:2	./.	./.	0/1:34,33:31:67:0.493:2
chr14	23745014	rs200974465	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,49:33:114:0.430:2	./.	./.	./.	./.	./.	./.	./.
chr14	23745533	rs10131813	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:39,33:30:73:0.458:2	0/1:23,30:31:54:0.566:2	0/1:1,9:26:10:0.900:2	./.	0/1:65,41:29:108:0.387:2	./.	./.	./.	./.	./.	./.
chr14	23746269	rs1057119	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:55,49:33:104:0.471:2	0/1:53,29:32:82:0.354:2	./.	0/1:4,114:32:118:0.966:2	./.	./.	0/1:89,72:32:161:0.447:2	0/1:95,66:32:161:0.410:2	0/1:84,60:33:147:0.417:2	./.	0/1:0,146:32:146:1.00:2
chr14	23777081	rs2231300	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,21:31:36:0.583:2	./.	./.	./.	./.	./.	./.	./.
chr14	23777099	rs2231301	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:30:7:0.571:2	./.	./.	0/1:20,24:31:44:0.545:2	0/1:14,13:30:27:0.481:2	./.	./.	0/1:20,18:30:38:0.474:2	./.
chr14	23777374	rs910332	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,21:31:21:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,40:31:40:1.00:2	0/1:1,43:30:44:0.977:2	0/1:0,40:31:40:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,42:30:42:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,31:31:31:1.00:2
chr14	23792215	rs2295126	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,42:33:90:0.467:2	./.	./.	./.	./.	./.	./.	./.
chr14	23817491	rs35149376	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:34:62:0.065:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	23821047	rs374337000	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:128:0.031:2	./.	./.	./.
chr14	23826792	rs2231811	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,22:31:38:0.579:2
chr14	23826822	rs2231809	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,49:29:49:1.00:2	./.	./.	0/1:24,33:30:57:0.579:2	./.	./.	./.	0/1:15,23:31:38:0.605:2
chr14	23828835	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,3:32:13:0.231:2	./.	./.
chr14	23829220	rs2231804	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,9:33:14:0.643:2
chr14	23829806	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,4:32:93:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr14	23829958	rs2231800	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,27:31:64:0.422:2	0/1:9,11:32:20:0.550:2	./.	./.	./.	./.	./.	./.	0/1:23,42:32:65:0.646:2	./.	./.
chr14	23830042	rs2231798	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,18:31:18:1.00:2	./.	./.	0/1:15,6:32:21:0.286:2	./.	./.	./.	0/1:12,17:32:29:0.586:2
chr14	23842147	rs144496239	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,30:29:52:0.577:2	./.	./.	./.	./.	./.	./.	./.
chr14	23844979	rs79877597	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,162:32:163:0.994:2	./.	./.	0/1:99,96:31:195:0.492:2	./.	./.	./.	./.
chr14	23848255	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.	./.
chr14	23848311	rs723840	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,88:30:90:0.989:2	0/1:0,59:31:59:1.00:2	0/1:13,6:28:19:0.316:2	0/1:41,39:31:80:0.488:2	0/1:91,74:30:165:0.448:2	0/1:106,4:32:110:0.036:2	0/1:0,153:31:153:1.00:2	0/1:73,74:30:147:0.503:2	0/1:59,56:32:115:0.487:2	./.	0/1:0,97:31:97:1.00:2
chr14	23852497	rs17091278	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,22:32:33:0.667:2	./.	./.	./.	./.	./.	./.	./.
chr14	23853739	rs200260229	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:32:46:0.087:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	23853740	rs202141059	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:32:47:0.085:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	23855569	rs178640	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,67:28:69:0.971:2	0/1:0,55:28:55:1.00:2	0/1:12,6:28:18:0.333:2	0/1:72,34:29:106:0.321:2	0/1:86,73:28:160:0.459:2	./.	0/1:2,130:28:132:0.985:2	0/1:86,67:28:153:0.438:2	0/1:50,58:29:108:0.537:2	./.	0/1:0,80:28:80:1.00:2
chr14	23855645	rs61742476	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,19:30:116:0.164:2	./.	./.	./.	./.	./.	./.	./.
chr14	23855705	rs45574136	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,33:30:118:0.280:2	./.	./.	./.	./.	./.	./.	./.
chr14	23856861	rs34855944	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,67:32:124:0.540:2	./.	./.	./.	./.	./.	./.	./.
chr14	23859610	rs28730771	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:36,21:30:57:0.368:2	0/1:17,11:29:28:0.393:2	./.	./.	./.	./.	0/1:20,25:32:45:0.556:2	./.	0/1:20,24:31:44:0.545:2	./.	0/1:26,18:31:44:0.409:2
chr14	23861811	rs365990	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,97:29:99:0.980:2	0/1:0,35:28:35:1.00:2	./.	0/1:56,64:29:120:0.533:2	0/1:0,68:29:68:1.00:2	0/1:56,56:30:112:0.500:2	0/1:49,54:30:103:0.524:2	0/1:71,54:29:126:0.432:2	0/1:73,75:29:149:0.507:2	0/1:43,45:30:88:0.511:2	0/1:74,70:29:144:0.486:2
chr14	23862710	rs145274612	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,55:31:132:0.417:2	./.	./.	./.	./.	./.	./.
chr14	23863028	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:171,5:29:176:0.028:2	./.	./.	./.	./.	./.	./.
chr14	23863040	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:172,5:27:177:0.028:2	./.	./.	./.	./.	./.	./.
chr14	23863043	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:173,4:32:177:0.023:2	./.	./.	./.	./.	./.	./.
chr14	23865945	rs144050960	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,5:31:154:0.032:2	./.	./.	./.	./.
chr14	23865965	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,5:33:170:0.029:2	./.	./.	./.	./.
chr14	23866807	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,3:33:55:0.055:2	./.	./.
chr14	23869525	rs142410102	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:29:194:0.026:2
chr14	23869993	rs61731179	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,69:31:159:0.434:2	./.	0/1:89,81:31:170:0.476:2	./.	./.	./.
chr14	23874507	rs2277473	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:29,33:32:62:0.532:2	0/1:23,18:32:41:0.439:2	./.	0/1:43,28:30:71:0.394:2	./.	./.	./.	0/1:56,40:31:96:0.417:2	./.	./.	0/1:38,47:31:85:0.553:2
chr14	23874523	rs2277474	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:26,26:32:52:0.500:2	0/1:21,18:30:39:0.462:2	./.	0/1:41,27:31:68:0.397:2	./.	./.	./.	0/1:50,34:31:84:0.405:2	./.	0/1:34,33:31:67:0.493:2	0/1:1,67:30:69:0.985:2
chr14	23874541	rs17277970	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,27:29:76:0.355:2	0/1:32,26:30:58:0.448:2	./.	./.	./.	./.
chr14	23876267	rs28711516	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,30:32:55:0.545:2	0/1:38,33:32:71:0.465:2	./.	./.	./.	./.
chr14	23884292	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,7:31:70:0.100:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	23884293	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,7:31:70:0.100:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	23884402	rs201171029	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:191,5:30:196:0.026:2	./.	./.	./.	./.	./.	0/1:144,5:32:150:0.034:2
chr14	23884889	rs3729830	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,35:32:68:0.522:2	0/1:16,15:33:31:0.484:2	./.	./.	./.	0/1:43,23:32:66:0.348:2	0/1:31,42:33:73:0.575:2	./.	0/1:25,31:33:56:0.554:2	./.	./.
chr14	23885218	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:42,3:34:45:0.067:2	./.	0/1:65,8:33:73:0.110:2	0/1:80,4:31:84:0.048:2	./.	0/1:66,3:34:69:0.043:2	./.	0/1:68,4:34:72:0.056:2	./.	./.
chr14	23885334	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:111,8:31:120:0.067:2	./.	./.	./.	0/1:189,5:29:194:0.026:2	./.	0/1:170,6:30:176:0.034:2	0/1:187,7:29:195:0.036:2	0/1:176,10:30:187:0.054:2	./.	0/1:122,4:30:127:0.032:2
chr14	23885360	rs142034311	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:125,62:31:189:0.332:2	./.	./.	./.	./.	./.	./.	./.
chr14	23885394	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:170,4:32:174:0.023:2	./.	./.	./.	0/1:177,6:33:183:0.033:2	./.	./.
chr14	23885477	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:160,10:30:170:0.059:2	./.	./.	./.	./.	./.	./.	./.
chr14	23886486	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,3:33:54:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	23889398	rs199552354	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:44,11:32:55:0.200:2	0/1:19,3:32:22:0.136:2	./.	./.	./.	./.	0/1:25,8:31:33:0.242:2	./.	0/1:37,6:30:43:0.140:2	./.	0/1:17,7:32:24:0.292:2
chr14	23890209	rs375323916	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,42:29:93:0.452:2	./.	./.	./.	./.	./.
chr14	23892888	rs7157716	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,80:29:145:0.552:2	./.	0/1:69,84:29:153:0.549:2	./.	./.	./.	0/1:72,75:30:147:0.510:2	0/1:0,156:30:156:1.00:2
chr14	23893320	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,6:31:110:0.055:2	./.	./.	./.	./.	./.	./.	./.
chr14	23893323	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,6:30:108:0.056:2	./.	./.	./.	./.	./.	./.	./.
chr14	23894946	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,6:32:175:0.034:2	./.	./.	./.
chr14	23894966	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,6:32:181:0.033:2	./.	./.	./.
chr14	23895007	rs121913644	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:31:111:0.036:2	./.	./.	./.	./.	./.
chr14	23898270	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,6:33:169:0.036:2	./.	./.	./.
chr14	23898465	rs150885220	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:34:130:0.031:2	./.
chr14	23898994	rs2231126	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,21:30:41:0.512:2	./.	./.	./.	./.	./.
chr14	23899027	rs735711	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,21:30:43:0.488:2
chr14	23899060	rs735712	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,25:31:56:0.446:2	./.	./.	./.	./.	./.	0/1:28,21:32:50:0.429:2	0/1:30,24:31:54:0.444:2
chr14	23899793	rs2231124	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:90,75:31:165:0.455:2	./.	./.	./.	0/1:93,62:33:155:0.400:2	./.	./.
chr14	23900794	rs2069542	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,35:30:66:0.530:2	./.	0/1:54,29:31:83:0.349:2	./.	./.	./.	0/1:29,44:32:74:0.603:2	0/1:36,36:31:72:0.500:2
chr14	23901012	rs2069541	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,64:31:144:0.444:2	./.	0/1:84,87:30:171:0.509:2	./.	./.	./.
chr14	23902753	rs2069540	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,35:33:35:1.00:2	0/1:0,24:31:24:1.00:2	./.	0/1:1,61:32:62:0.984:2	0/1:47,28:32:75:0.373:2	0/1:0,64:32:64:1.00:2	./.	0/1:0,74:32:75:1.00:2	0/1:39,41:33:80:0.513:2	0/1:0,61:33:61:1.00:2	0/1:0,54:33:54:1.00:2
chr14	23939305	rs138567688	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,23:32:47:0.489:2	0/1:18,10:32:28:0.357:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	23944505	rs2236260	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,136:32:136:1.00:2	0/1:0,70:31:70:1.00:2	0/1:11,4:32:15:0.267:2	0/1:0,160:31:160:1.00:2	0/1:99,53:31:152:0.349:2	0/1:103,58:31:161:0.360:2	0/1:127,45:31:172:0.262:2	0/1:6,144:31:150:0.960:2	0/1:0,164:32:164:1.00:2	0/1:0,122:31:122:1.00:2	./.
chr14	23944514	rs2236261	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,133:31:133:1.00:2	0/1:0,73:31:73:1.00:2	0/1:11,6:27:17:0.353:2	0/1:0,151:30:151:1.00:2	0/1:90,43:31:133:0.323:2	0/1:96,52:31:148:0.351:2	0/1:119,41:31:160:0.256:2	0/1:5,132:31:137:0.964:2	0/1:0,150:32:150:1.00:2	0/1:0,107:31:107:1.00:2	0/1:88,88:31:176:0.500:2
chr14	23947234	rs149001465	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,70:29:169:0.414:2	./.
chr14	24026493	rs34015250	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,5:30:9:0.556:2	0/1:10,13:31:23:0.565:2	0/1:12,9:29:21:0.429:2	./.	./.	./.
chr14	24033027	rs12897422	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,36:30:79:0.456:2	./.	./.	./.	0/1:3,46:30:49:0.939:2	./.
chr14	24034818	rs142782750	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,22:30:50:0.440:2	./.	./.	./.	./.	./.
chr14	24113370	rs141543727	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,82:28:167:0.491:2	./.	./.	./.	./.	./.
chr14	24423007	rs17099455	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,18:31:38:0.474:2	./.	./.	./.	./.	./.
chr14	24423090	rs2273944	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,12:28:30:0.400:2	./.	./.	./.	./.	./.
chr14	24424289	rs1127279	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,7:29:78:0.090:2	./.	./.	./.	./.
chr14	24424305	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,42:32:92:0.457:2	./.	./.	./.	./.	./.
chr14	24424346	rs4981491	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,20:30:67:0.299:2	0/1:24,8:31:32:0.250:2	./.	./.	./.	0/1:58,19:31:77:0.247:2	./.	0/1:27,10:31:37:0.270:2	0/1:42,11:33:53:0.208:2	0/1:40,13:31:53:0.245:2	./.
chr14	24424367	rs12147221	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,34:31:102:0.333:2	0/1:20,16:31:36:0.444:2	./.	./.	./.	./.
chr14	24424420	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,13:29:50:0.260:2	0/1:29,7:31:36:0.194:2	./.	./.	./.	0/1:83,15:29:98:0.153:2	0/1:46,9:28:55:0.164:2	0/1:72,5:27:77:0.065:2	0/1:65,3:35:68:0.044:2	0/1:47,8:29:55:0.145:2	./.
chr14	24429194	rs79275197	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,9:26:100:0.090:2	./.	./.	./.	0/1:53,58:26:112:0.523:2
chr14	24434997	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,27:30:188:0.144:2	./.	./.	./.	./.	./.
chr14	24435037	rs200746605	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:171,24:31:195:0.123:2	0/1:149,17:32:166:0.102:2	./.	./.	./.	0/1:150,41:31:191:0.215:2	./.	0/1:189,10:30:199:0.050:2	0/1:187,12:33:199:0.060:2	0/1:181,17:32:198:0.086:2	./.
chr14	24435130	rs199669924	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,6:32:171:0.035:2	./.	./.	./.	./.	./.
chr14	24435542	rs11556285	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:179,10:31:189:0.053:2	0/1:182,15:32:197:0.076:2	./.	./.	./.	0/1:178,20:31:198:0.101:2	./.	0/1:186,10:30:196:0.051:2	0/1:191,6:32:197:0.030:2	0/1:189,4:32:193:0.021:2	./.
chr14	24435564	rs1043650	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,82:32:193:0.425:2	./.	./.	./.	./.
chr14	24458162	rs2273946	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,62:32:62:1.00:2	0/1:0,27:31:27:1.00:2	./.	0/1:41,20:31:61:0.328:2	0/1:28,34:32:62:0.548:2	0/1:1,97:32:98:0.990:2	0/1:0,78:32:78:1.00:2	0/1:1,69:32:70:0.986:2	0/1:0,90:33:90:1.00:2	0/1:30,25:33:55:0.455:2	./.
chr14	24458211	rs2273947	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,34:29:82:0.415:2	0/1:38,36:30:74:0.486:2	./.	./.	0/1:40,41:30:81:0.506:2	./.	./.	./.
chr14	24458236	rs55795553	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,48:29:94:0.511:2	./.	./.	./.	./.
chr14	24459407	rs61732730	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,86:29:143:0.601:2	./.	./.	./.
chr14	24459428	rs45534140	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,5:26:136:0.037:2	0/1:50,21:30:71:0.296:2	./.	./.	./.	./.
chr14	24459436	rs11556286	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:32:131:0.031:2	./.	./.	./.	./.	./.
chr14	24459493	rs60865462	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,60:31:61:0.984:2	0/1:0,41:31:41:1.00:2	./.	./.	./.	0/1:3,49:31:52:0.942:2	./.	0/1:48,7:32:55:0.127:2	0/1:40,16:32:56:0.286:2	0/1:47,17:32:64:0.266:2	./.
chr14	24459514	rs45596131	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,11:31:37:0.297:2	./.	./.	./.	./.
chr14	24459520	rs45583341	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,46:31:46:1.00:2	0/1:1,40:30:41:0.976:2	./.	./.	./.	0/1:1,62:30:63:0.984:2	0/1:35,16:31:51:0.314:2	0/1:49,18:32:67:0.269:2	0/1:45,23:31:68:0.338:2	0/1:51,19:31:70:0.271:2	./.
chr14	24464310	rs61999853	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,39:32:136:0.287:2	0/1:89,31:32:121:0.258:2	./.	./.	./.	0/1:134,5:31:139:0.036:2	0/1:52,51:31:104:0.495:2	./.	./.	./.	./.
chr14	24464324	rs11556284	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,39:33:121:0.322:2	0/1:75,31:32:106:0.292:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	24470098	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,58:29:196:0.296:2	./.	./.	./.	./.	./.
chr14	24470138	rs1811890	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,162:31:194:0.835:2	0/1:23,150:32:173:0.867:2	./.	./.	./.	0/1:76,118:31:194:0.608:2	./.	0/1:121,77:32:198:0.389:2	0/1:130,66:32:196:0.337:2	0/1:120,75:32:195:0.385:2	./.
chr14	24470218	rs148108526	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,86:31:186:0.462:2	0/1:94,96:32:190:0.505:2	./.	./.
chr14	24470231	rs79847141	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,75:32:194:0.387:2	./.	./.	./.	./.	./.
chr14	24473542	rs190071680	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:161,6:30:167:0.036:2	./.	./.	0/1:166,6:30:172:0.035:2	0/1:164,7:25:171:0.041:2	./.	./.	./.	./.	./.	./.
chr14	24505722	rs8005834	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,30:32:30:1.00:2	./.	0/1:27,25:33:52:0.481:2	0/1:16,17:30:33:0.515:2	0/1:1,48:31:49:0.980:2	0/1:16,7:33:23:0.304:2	0/1:12,11:31:23:0.478:2	0/1:9,29:33:38:0.763:2	0/1:25,12:32:37:0.324:2	0/1:8,8:32:16:0.500:2
chr14	24505836	rs112435648	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,11:29:70:0.157:2	./.	0/1:81,5:31:86:0.058:2	0/1:65,5:30:71:0.071:2	0/1:60,9:28:69:0.130:2	./.
chr14	24506973	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,23:29:50:0.460:2	./.	./.	./.	./.	./.	./.
chr14	24507003	rs28599797	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,35:27:88:0.398:2	0/1:36,30:28:66:0.455:2	./.	./.	./.	./.	./.	0/1:33,22:29:55:0.400:2
chr14	24507010	rs12587718	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,141:32:143:0.986:2	0/1:1,67:32:68:0.985:2	./.	./.	./.	0/1:0,126:31:126:1.00:2	0/1:33,43:32:76:0.566:2	0/1:55,76:32:131:0.580:2	0/1:32,57:33:89:0.640:2	0/1:38,47:31:85:0.553:2	./.
chr14	24507039	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:126,4:31:130:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr14	24507054	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:31:126:0.032:2	./.	./.
chr14	24507116	rs55933233	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,86:32:188:0.460:2	./.	./.	./.	./.
chr14	24513014	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,5:17:18:0.278:2
chr14	24517602	rs62000821	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,34:31:68:0.500:2	./.	./.	./.	./.
chr14	24517936	rs201609317	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:192,6:31:198:0.030:2	./.	./.	./.	0/1:185,8:29:193:0.041:2	./.	./.	0/1:187,6:31:193:0.031:2	./.	./.
chr14	24517940	rs200157408	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:191,6:31:197:0.030:2	./.	./.	./.	0/1:188,8:31:196:0.041:2	./.	./.	0/1:185,7:26:192:0.036:2	./.	./.
chr14	24523634	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:33:86:0.047:2	./.	./.
chr14	24526206	rs45484702	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,23:29:54:0.426:2	0/1:16,6:27:22:0.273:2	./.	0/1:52,23:30:75:0.307:2	0/1:64,41:29:105:0.390:2	0/1:47,32:29:79:0.405:2	0/1:37,34:29:71:0.479:2	./.	./.	0/1:55,22:30:77:0.286:2	./.
chr14	24527220	rs4982853	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,24:31:50:0.480:2	./.	./.
chr14	24529209	rs61564890	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:33:5:0.600:2	./.	./.	./.	./.	./.	0/1:27,40:33:67:0.597:2	./.	./.
chr14	24529260	rs58283036	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:32:6:1.00:2	./.	./.	./.	0/1:40,49:31:89:0.551:2	./.	0/1:29,35:33:64:0.547:2	./.	./.
chr14	24529890	rs1951635	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,83:32:83:1.00:2	0/1:39,57:32:96:0.594:2	0/1:0,64:32:64:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,83:33:83:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,67:31:67:1.00:2
chr14	24533474	rs117092113	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,17:32:28:0.607:2	0/1:3,13:32:16:0.813:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	24533539	rs10146906	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,13:31:25:0.520:2	0/1:10,13:32:23:0.565:2	./.	0/1:14,24:31:38:0.632:2	0/1:19,20:30:39:0.513:2	0/1:21,33:30:54:0.611:2	0/1:20,26:31:46:0.565:2	0/1:0,29:31:29:1.00:2	./.	./.	0/1:18,23:31:41:0.561:2
chr14	24534206	rs139165380	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,6:33:13:0.462:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	24534270	rs117833529	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:31:4:1.00:2	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	24543787	rs143981627	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,17:33:55:0.309:2	./.	./.
chr14	24543808	rs2070343	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:19,33:31:52:0.635:2	0/1:9,15:30:24:0.625:2	./.	0/1:33,17:31:50:0.340:2	./.	0/1:32,30:30:62:0.484:2	0/1:31,25:30:56:0.446:2	./.	0/1:39,21:30:60:0.350:2	0/1:20,25:30:45:0.556:2	./.
chr14	24545366	rs2070342	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:36,37:29:73:0.507:2	0/1:26,18:29:44:0.409:2	./.	./.	0/1:42,36:29:78:0.462:2	./.	0/1:29,29:29:58:0.500:2	0/1:39,45:29:84:0.536:2	./.	0/1:1,54:30:55:0.982:2	0/1:29,18:31:47:0.383:2
chr14	24545375	rs2070341	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:43,36:32:79:0.456:2	0/1:21,26:32:47:0.553:2	./.	0/1:58,34:32:92:0.370:2	./.	0/1:1,60:32:62:0.984:2	0/1:37,28:32:65:0.431:2	./.	0/1:0,66:33:66:1.00:2	./.	0/1:21,29:33:50:0.580:2
chr14	24546811	rs141172183	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,24:30:60:0.400:2
chr14	24567498	rs3021119	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,54:30:55:0.982:2	0/1:0,25:31:25:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,71:30:71:1.00:2	0/1:0,86:30:86:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,71:30:71:1.00:2
chr14	24569242	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,6:26:103:0.058:2	./.	./.	./.	./.	./.
chr14	24572377	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:153,5:27:158:0.032:2	./.	./.	./.	./.	./.	./.
chr14	24572812	rs35618680	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,23:32:51:0.451:2	0/1:22,22:30:44:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	24587639	rs3825584	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,65:32:66:0.985:2	0/1:3,41:32:44:0.932:2	0/1:8,4:31:12:0.333:2	0/1:51,49:31:100:0.490:2	./.	./.	./.	./.	./.	./.	0/1:74,50:32:124:0.403:2
chr14	24587667	rs17101367	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,41:31:77:0.532:2	0/1:31,26:31:57:0.456:2	0/1:11,6:29:17:0.353:2	0/1:73,67:31:140:0.479:2	./.	./.	./.	./.	./.	./.	0/1:83,55:31:138:0.399:2
chr14	24588841	rs184872523	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,32:31:59:0.552:2	./.	./.	./.	./.	./.	./.
chr14	24606928	rs11548692	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,100:30:195:0.513:2	./.	./.	./.	./.
chr14	24607318	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:33:185:0.022:2
chr14	24607340	rs11574511	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,82:29:181:0.453:2	./.	./.	./.	./.
chr14	24608235	rs140507308	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,36:31:69:0.522:2	./.	./.	./.
chr14	24614361	rs7146672	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,116:33:116:1.00:2	0/1:0,53:32:53:1.00:2	0/1:7,7:32:14:0.500:2	0/1:0,101:33:101:1.00:2	0/1:1,105:32:106:0.991:2	0/1:0,117:32:117:1.00:2	0/1:0,91:33:91:1.00:2	0/1:0,121:32:121:1.00:2	0/1:0,141:34:141:1.00:2	0/1:0,91:33:91:1.00:2	0/1:0,128:32:128:1.00:2
chr14	24615435	rs4575	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:18,11:32:29:0.379:2	./.	./.	0/1:21,11:31:32:0.344:2	./.	./.	0/1:9,19:32:28:0.679:2	./.	./.	./.	0/1:23,31:33:54:0.574:2
chr14	24617238	rs2273913	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,8:31:22:0.364:2	0/1:72,86:31:158:0.544:2	0/1:80,77:31:157:0.490:2	./.	./.	./.	./.	./.	0/1:56,62:32:119:0.525:2
chr14	24619999	rs187811103	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,16:30:30:0.533:2	./.	./.	./.	./.	./.	./.
chr14	24620061	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	24641749	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,4:29:75:0.053:2	./.	./.	./.	./.	./.	./.
chr14	24641838	rs17101730	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:31:8:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	24642348	rs11547058	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,12:29:33:0.364:2
chr14	24647814	rs1885711	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,6:33:15:0.400:2	0/1:1,5:30:6:0.833:2	./.	./.	0/1:0,20:33:20:1.00:2	0/1:16,13:30:29:0.448:2	./.	./.	0/1:0,27:33:27:1.00:2	0/1:11,10:32:21:0.476:2	./.
chr14	24647826	rs200490428	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,10:31:15:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	24649669	rs2273912	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,27:32:68:0.397:2	./.	./.	./.	./.	./.	./.
chr14	24653523	rs11550452	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,19:30:42:0.452:2	0/1:15,6:30:21:0.286:2	./.	./.	0/1:30,33:29:63:0.524:2	0/1:30,34:29:64:0.531:2	./.	./.	0/1:0,45:29:45:1.00:2	0/1:25,16:30:41:0.390:2	./.
chr14	24653902	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:32:122:0.033:2
chr14	24653954	rs7146310	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:49,39:31:88:0.443:2	0/1:36,24:31:60:0.400:2	./.	./.	0/1:101,63:30:164:0.384:2	0/1:72,93:29:165:0.564:2	./.	./.	0/1:3,173:30:177:0.983:2	0/1:40,46:30:86:0.535:2	./.
chr14	24654489	rs2025258	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:57,47:31:104:0.452:2	0/1:27,19:31:46:0.413:2	./.	./.	0/1:76,73:30:149:0.490:2	0/1:66,57:31:123:0.463:2	0/1:127,4:31:131:0.031:2	./.	0/1:0,120:32:120:1.00:2	0/1:56,36:31:92:0.391:2	./.
chr14	24655337	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,5:28:169:0.030:2	./.	./.	./.	./.
chr14	24657407	rs6573607	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:40,33:32:74:0.452:2	0/1:25,18:32:44:0.419:2	0/1:6,3:34:9:0.333:2	./.	0/1:0,93:32:93:1.00:2	0/1:53,42:32:95:0.442:2	./.	./.	0/1:1,98:33:99:0.990:2	0/1:50,39:32:89:0.438:2	./.
chr14	24659699	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:32:48:0.083:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	24662177	rs10583	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,46:31:85:0.541:2	0/1:17,21:32:38:0.553:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	24662296	rs62621251	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,81:32:164:0.494:2	./.	./.	./.
chr14	24675797	rs139346717	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,92:33:192:0.479:2	./.	./.
chr14	24679877	rs2295322	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,32:32:72:0.444:2	0/1:31,20:32:51:0.392:2	0/1:0,6:31:6:1.00:2	0/1:0,113:32:113:1.00:2	0/1:50,60:31:110:0.545:2	0/1:65,60:31:126:0.480:2	0/1:4,146:31:150:0.973:2	0/1:0,136:32:136:1.00:2	0/1:71,73:33:144:0.507:2	0/1:72,74:32:146:0.507:2	0/1:1,89:33:90:0.989:2
chr14	24683304	rs145254894	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,13:31:58:0.224:2	./.	./.	0/1:36,27:32:63:0.429:2	./.
chr14	24709057	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:34:88:0.045:2	./.
chr14	24711389	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,6:32:123:0.049:2	./.	./.	./.
chr14	24728294	rs1126432	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,21:33:40:0.525:2	0/1:13,8:32:21:0.381:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	24736027	rs14193	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,42:29:109:0.385:2	0/1:34,13:32:47:0.277:2	./.	./.	./.	0/1:95,67:31:162:0.414:2	./.	0/1:98,99:31:197:0.503:2	0/1:111,78:32:189:0.413:2	./.	./.
chr14	24736961	rs729421	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,51:33:115:0.443:2	0/1:29,29:32:58:0.500:2	0/1:9,6:33:15:0.400:2	0/1:73,72:32:145:0.497:2	./.	0/1:69,71:32:140:0.507:2	./.	0/1:107,82:32:189:0.434:2	0/1:67,74:33:141:0.525:2	./.	./.
chr14	24737120	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:33:173:0.023:2	./.	./.	./.	./.
chr14	24740111	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:32:136:0.029:2	./.
chr14	24740272	rs78807053	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,35:28:70:0.500:2	0/1:17,16:27:33:0.485:2	./.	./.	./.	0/1:29,29:28:58:0.500:2	./.	0/1:38,40:26:78:0.513:2	./.	./.	./.
chr14	24760808	rs1131941	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,42:33:42:1.00:2	0/1:1,29:33:30:0.967:2	./.	./.	./.	0/1:43,26:33:69:0.377:2	./.	0/1:46,24:33:70:0.343:2	./.	./.	./.
chr14	24769663	rs11158632	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,80:28:80:1.00:2	0/1:3,43:28:46:0.935:2	./.	./.	./.	0/1:35,61:28:96:0.635:2	./.	0/1:53,44:27:97:0.454:2	./.	./.	./.
chr14	24771256	rs4247001	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:32:70:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,107:32:107:1.00:2	0/1:0,73:31:73:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,103:33:103:1.00:2	0/1:2,66:32:68:0.971:2	0/1:0,112:32:112:1.00:2
chr14	24771285	rs4280164	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,74:31:74:1.00:2	0/1:0,47:31:47:1.00:2	./.	./.	./.	0/1:59,53:30:112:0.473:2	./.	0/1:60,47:30:107:0.439:2	./.	./.	./.
chr14	24773387	rs2144494	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,56:29:56:1.00:2	0/1:0,35:29:35:1.00:2	./.	./.	./.	0/1:48,38:29:86:0.442:2	./.	0/1:63,60:29:123:0.488:2	./.	./.	./.
chr14	24776996	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:32:172:0.023:2	./.	./.	./.	./.	./.
chr14	24785956	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,39:33:95:0.411:2	./.	./.	./.
chr14	24786060	rs1046587	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,10:31:19:0.526:2	0/1:84,64:30:148:0.432:2	0/1:88,58:29:146:0.397:2	./.	0/1:2,168:29:170:0.988:2	0/1:109,60:29:170:0.355:2	0/1:71,59:31:130:0.454:2	0/1:73,45:29:118:0.381:2	0/1:0,112:29:112:1.00:2
chr14	24786293	rs4981503	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:31:6:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,33:32:33:1.00:2	0/1:26,17:33:43:0.395:2	0/1:0,55:32:55:1.00:2	0/1:22,24:32:47:0.522:2	0/1:0,61:33:61:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,61:32:61:1.00:2
chr14	24786726	rs61998513	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,30:29:77:0.390:2
chr14	24786915	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,4:31:78:0.051:2	./.	./.	./.	./.	./.	./.	./.
chr14	24786976	rs3181384	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:33:11:1.00:2	0/1:2,122:31:124:0.984:2	0/1:0,115:32:115:1.00:2	0/1:64,55:32:119:0.462:2	0/1:0,121:32:121:1.00:2	0/1:59,66:32:125:0.528:2	0/1:0,100:32:100:1.00:2	0/1:0,117:32:117:1.00:2	0/1:1,114:32:115:0.991:2
chr14	24789043	rs78704784	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,32:33:70:0.457:2	./.	./.	./.	./.
chr14	24793600	rs1884366	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:31:44:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,3:29:3:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,74:29:74:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,68:30:68:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,65:30:65:1.00:2
chr14	24795495	rs17256902	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,19:30:73:0.260:2	./.	0/1:49,26:28:75:0.347:2	./.	./.	0/1:0,64:31:64:1.00:2	0/1:36,20:29:56:0.357:2	./.
chr14	24805463	rs3212254	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,6:32:9:0.667:2	0/1:23,32:31:55:0.582:2	./.	./.	./.	./.	./.	./.	./.
chr14	24806902	rs34106261	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,83:31:173:0.480:2	./.	./.	0/1:3,172:33:176:0.983:2	0/1:53,41:33:94:0.436:2	./.
chr14	24807221	rs56337365	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,51:31:115:0.443:2	./.	./.	0/1:1,93:32:94:0.989:2	0/1:72,37:32:109:0.339:2	./.
chr14	24808388	rs3181247	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,17:32:52:0.327:2	./.	./.	0/1:0,53:33:53:1.00:2	0/1:38,15:33:53:0.283:2	./.
chr14	24836270	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,27:8:124:0.218:2	./.	0/1:101,21:9:123:0.172:2	0/1:104,27:9:132:0.206:2	./.	./.	./.
chr14	24839083	rs2229309	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:32:4:1.00:2	0/1:3,18:30:21:0.857:2	0/1:0,24:30:24:1.00:2	./.	0/1:0,25:31:25:1.00:2	0/1:5,7:31:12:0.583:2	./.	0/1:8,5:33:13:0.385:2	0/1:0,27:32:27:1.00:2
chr14	24839165	rs2228233	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,23:31:23:1.00:2	0/1:0,13:32:13:1.00:2	./.	./.	./.	0/1:24,29:31:53:0.547:2	./.	0/1:37,54:31:91:0.593:2	./.	./.	./.
chr14	24843620	rs2295298	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,38:28:71:0.535:2	0/1:23,23:29:46:0.500:2	0/1:12,3:30:15:0.200:2	0/1:74,42:30:116:0.362:2	0/1:6,106:29:112:0.946:2	./.	0/1:4,102:30:107:0.962:2	0/1:51,60:29:111:0.541:2	./.	0/1:47,25:30:72:0.347:2	0/1:0,78:29:78:1.00:2
chr14	24845543	rs2228232	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,23:32:56:0.411:2	./.	./.	0/1:1,82:33:83:0.988:2	0/1:17,27:33:44:0.614:2	./.
chr14	24845841	rs7149586	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,14:30:28:0.500:2	0/1:4,11:31:15:0.733:2	./.	0/1:14,8:32:22:0.364:2	0/1:0,19:31:19:1.00:2	0/1:13,10:33:23:0.435:2	0/1:2,19:33:21:0.905:2	0/1:8,16:31:24:0.667:2	0/1:0,19:32:19:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,27:32:27:1.00:2
chr14	24877905	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,4:31:90:0.044:2	./.	./.	./.	./.	./.	./.	./.
chr14	24878485	rs12897153	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,18:33:39:0.462:2	0/1:36,15:30:51:0.294:2	0/1:30,23:33:53:0.434:2	./.	./.
chr14	24883887	rs8017377	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,18:31:44:0.409:2	0/1:14,8:31:22:0.364:2	./.	0/1:0,45:30:45:1.00:2	0/1:47,26:30:73:0.356:2	0/1:31,18:31:49:0.367:2	0/1:44,25:31:69:0.362:2	./.	0/1:30,21:31:51:0.412:2	./.	0/1:0,46:32:46:1.00:2
chr14	24883947	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:28:61:0.066:2
chr14	24884667	rs144623810	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,36:33:85:0.424:2	./.
chr14	24901249	rs3742520	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,82:31:83:1.00:2	0/1:0,44:32:45:1.00:2	./.	0/1:72,68:31:140:0.486:2	0/1:54,66:31:120:0.550:2	0/1:3,112:32:115:0.974:2	0/1:65,39:32:104:0.375:2	0/1:0,114:32:114:1.00:2	./.	0/1:58,42:32:100:0.420:2	0/1:0,73:32:73:1.00:2
chr14	24901276	rs7151995	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:32:70:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,140:31:140:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,110:31:110:1.00:2	0/1:0,79:31:81:1.00:2	0/1:0,117:31:117:1.00:2	0/1:0,121:32:121:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,78:32:78:1.00:2
chr14	24901433	rs17795094	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,23:31:57:0.404:2	0/1:43,33:31:76:0.434:2	./.	./.	./.	./.	./.	./.
chr14	24909362	rs1043831	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:31:64:1.00:2	0/1:0,31:30:31:1.00:2	0/1:12,6:32:18:0.333:2	0/1:0,99:30:99:1.00:2	0/1:0,68:30:68:1.00:2	0/1:0,83:29:83:1.00:2	0/1:0,91:30:91:1.00:2	0/1:47,39:29:86:0.453:2	0/1:48,39:31:87:0.448:2	./.	0/1:0,79:29:79:1.00:2
chr14	24909475	rs3211056	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:29:61:1.00:2	0/1:0,51:29:51:1.00:2	0/1:12,5:30:17:0.294:2	0/1:1,105:30:106:0.991:2	0/1:1,158:29:159:0.994:2	0/1:0,116:29:116:1.00:2	0/1:1,152:29:153:0.993:2	0/1:105,82:29:187:0.439:2	0/1:57,57:30:114:0.500:2	./.	0/1:0,104:29:104:1.00:2
chr14	24909629	rs11538256	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,8:29:10:0.800:2	./.	./.	./.	./.	./.	./.	0/1:24,40:29:64:0.625:2	./.
chr14	24910076	rs11538184	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,41:32:69:0.603:2	./.	./.	./.	./.
chr14	24910973	rs11625819	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,16:31:16:1.00:2	0/1:0,12:33:12:1.00:2	./.	0/1:0,17:33:17:1.00:2	0/1:0,16:32:16:1.00:2	0/1:1,21:32:22:0.955:2	0/1:0,10:33:10:1.00:2	0/1:38,26:31:64:0.406:2	0/1:30,12:34:42:0.286:2	./.	0/1:0,46:33:46:1.00:2
chr14	24910974	rs11625820	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,16:30:16:1.00:2	0/1:0,12:32:12:1.00:2	./.	0/1:0,17:30:17:1.00:2	0/1:0,16:31:16:1.00:2	0/1:1,21:30:22:0.955:2	0/1:0,10:29:10:1.00:2	0/1:38,26:30:64:0.406:2	0/1:30,12:32:42:0.286:2	./.	0/1:0,46:30:46:1.00:2
chr14	24911452	rs11538255	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,6:23:12:0.500:2	./.
chr14	24912008	rs17184766	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,90:33:186:0.484:2	0/1:101,91:34:192:0.474:2	./.	./.
chr14	24975435	rs5249	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:31:33:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,34:31:34:1.00:2	0/1:1,41:31:42:0.976:2	0/1:0,36:31:36:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,37:30:37:1.00:2
chr14	25042909	rs61737118	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,22:31:48:0.458:2	./.	./.
chr14	25043671	rs45567233	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,31:33:82:0.378:2	./.
chr14	25044616	rs199634129	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,28:32:44:0.636:2	./.
chr14	25075920	rs72681016	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,38:30:85:0.447:2	./.	./.	./.	./.	./.	./.	0/1:68,36:30:104:0.346:2
chr14	25076836	rs142357322	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:38,11:31:49:0.224:2	0/1:147,18:31:165:0.109:2	./.	0/1:144,31:31:175:0.177:2	./.	0/1:164,12:32:176:0.068:2	0/1:137,19:32:156:0.122:2	./.	./.
chr14	25076877	rs140193391	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:34,8:32:42:0.190:2	0/1:156,31:30:187:0.166:2	./.	0/1:152,40:31:192:0.208:2	./.	0/1:171,22:32:193:0.114:2	0/1:156,33:32:189:0.175:2	./.	./.
chr14	25076906	rs20545	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:29,7:30:36:0.194:2	0/1:160,33:28:193:0.171:2	./.	0/1:155,35:30:190:0.184:2	./.	0/1:166,19:30:186:0.103:2	./.	./.	./.
chr14	25100282	rs2236338	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,13:30:31:0.419:2	0/1:108,81:32:189:0.429:2	./.	0/1:106,87:32:193:0.451:2	./.	0/1:120,74:33:194:0.381:2	0/1:105,82:34:188:0.439:2	./.	./.
chr14	25101548	rs1126639	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,10:31:25:0.400:2	0/1:132,42:29:174:0.241:2	./.	0/1:141,28:29:169:0.166:2	./.	0/1:132,35:30:168:0.210:2	0/1:135,49:31:184:0.266:2	./.	./.
chr14	25101589	rs11539752	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,10:32:23:0.435:2	0/1:131,41:31:172:0.238:2	./.	0/1:114,40:30:154:0.260:2	./.	0/1:119,39:30:158:0.247:2	0/1:116,53:31:169:0.314:2	./.	./.
chr14	25101629	rs10909625	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,6:32:14:0.429:2	0/1:92,51:33:143:0.357:2	./.	0/1:85,42:32:127:0.331:2	./.	0/1:80,43:32:123:0.350:2	0/1:84,45:33:129:0.349:2	./.	./.
chr14	25102160	rs8192917	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,53:32:53:1.00:2	0/1:0,33:31:33:1.00:2	./.	0/1:41,52:31:93:0.559:2	0/1:1,81:31:82:0.988:2	0/1:59,36:31:95:0.379:2	0/1:1,81:31:82:0.988:2	0/1:52,32:32:84:0.381:2	0/1:36,29:32:65:0.446:2	0/1:0,48:32:48:1.00:2	0/1:0,62:32:62:1.00:2
chr14	25288390	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:31:96:0.042:2	./.	./.
chr14	26939674	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:33:160:0.025:2
chr14	29237968	rs151157846	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:18,18:32:36:0.500:2	0/1:12,11:32:23:0.478:2	./.	./.	./.	./.	0/1:18,9:28:27:0.333:2	./.	./.	./.	./.
chr14	29261308	rs34203558	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:46,5:33:51:0.098:2	./.	./.	./.	0/1:22,6:32:28:0.214:2	./.	./.	./.	./.	./.	./.
chr14	29261309	rs56025822	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,10:33:41:0.244:2	./.	./.	./.	./.	./.
chr14	29261375	rs187150624	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,21:33:59:0.356:2	./.	./.	./.	./.	./.	./.	./.
chr14	30066929	rs2230505	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,10:32:26:0.385:2	0/1:3,11:30:14:0.786:2	./.	./.	./.	0/1:8,12:30:20:0.600:2	0/1:19,9:33:28:0.321:2	./.	./.	./.	0/1:1,17:33:18:0.944:2
chr14	30396471	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:32:12:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr14	31066643	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,5:31:72:0.069:2	./.	./.	./.	./.	./.	./.
chr14	31071064	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:31:119:0.034:2	./.	./.	./.	./.	./.
chr14	31074943	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:136,4:33:140:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr14	31077213	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,4:30:116:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr14	31085585	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,6:28:195:0.031:2	./.	./.	./.
chr14	31085680	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:28:59:0.068:2	./.	./.	./.	./.
chr14	31099738	rs229150	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,18:33:38:0.474:2	0/1:19,14:32:33:0.424:2	0/1:5,6:32:11:0.545:2	0/1:22,23:32:45:0.511:2	0/1:15,15:32:30:0.500:2	0/1:16,31:32:47:0.660:2	0/1:30,20:33:50:0.400:2	./.	./.	./.	0/1:31,42:33:73:0.575:2
chr14	31108977	rs2273521	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,7:33:22:0.318:2	0/1:6,3:33:9:0.333:2	0/1:15,18:32:33:0.545:2	0/1:4,5:34:9:0.556:2	./.	./.	./.	0/1:17,13:33:30:0.433:2
chr14	31191772	rs17097130	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,52:33:139:0.374:2	0/1:37,21:34:58:0.362:2	0/1:77,50:32:127:0.394:2	0/1:31,28:34:59:0.475:2	./.	./.	./.	./.
chr14	31204854	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:169,4:33:173:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr14	31354778	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,99:32:198:0.500:2	./.	./.	./.	./.	./.
chr14	31354794	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:33:168:0.024:2	./.
chr14	31355096	rs1045644	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,66:33:124:0.532:2	0/1:40,23:33:63:0.365:2	0/1:0,21:32:21:1.00:2	0/1:77,74:32:151:0.490:2	0/1:3,171:32:174:0.983:2	./.	./.	0/1:2,143:32:145:0.986:2	0/1:90,88:34:178:0.494:2	0/1:99,74:32:173:0.428:2	./.
chr14	31358897	rs17097468	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,51:32:98:0.520:2
chr14	31381351	rs2273171	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:43,33:32:76:0.434:2	0/1:31,21:31:52:0.404:2	0/1:0,7:32:7:1.00:2	./.	0/1:34,30:32:64:0.469:2	./.	0/1:45,35:32:80:0.438:2	0/1:64,62:32:126:0.492:2	./.	0/1:38,18:32:56:0.321:2	./.
chr14	31416386	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:31:134:0.030:2	./.	./.	./.
chr14	31425437	rs12886419	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,39:28:71:0.549:2	./.	0/1:0,88:28:88:1.00:2	0/1:32,18:27:50:0.360:2	./.	./.	./.	./.
chr14	31535485	rs201972703	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,32:32:95:0.337:2
chr14	31539100	rs367967945	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:31:92:0.043:2	./.
chr14	31539109	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:29:89:0.045:2	./.
chr14	31562213	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:33:89:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	31578762	rs17097735	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:61,47:32:108:0.435:2	0/1:33,27:32:60:0.450:2	./.	0/1:77,85:32:162:0.525:2	./.	./.	./.	0/1:168,4:32:172:0.023:2	0/1:86,49:32:135:0.363:2	0/1:71,50:31:121:0.413:2	0/1:67,64:31:131:0.489:2
chr14	31578767	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.
chr14	31582380	rs1315794	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,19:32:19:1.00:2	0/1:0,6:32:6:1.00:2	./.	0/1:0,27:33:27:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,31:32:31:1.00:2
chr14	31582526	rs2273483	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,25:31:44:0.568:2	0/1:8,15:32:23:0.652:2	./.	0/1:34,24:32:58:0.414:2	0/1:19,23:32:42:0.548:2	0/1:34,29:32:63:0.460:2	./.	0/1:29,41:32:70:0.586:2	0/1:0,70:33:70:1.00:2	0/1:26,21:32:47:0.447:2	0/1:0,88:33:88:1.00:2
chr14	31583512	rs61976859	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,27:30:68:0.397:2	./.	./.	./.	0/1:77,47:32:124:0.379:2	./.	./.
chr14	31598248	rs17097743	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:94,64:33:158:0.405:2	0/1:80,69:32:149:0.463:2	./.	0/1:99,70:33:169:0.414:2	./.	./.	./.	./.	0/1:95,87:34:182:0.478:2	0/1:86,82:33:168:0.488:2	0/1:75,103:32:178:0.579:2
chr14	31619392	rs11620816	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:77,73:33:150:0.487:2	0/1:50,33:33:83:0.398:2	./.	0/1:86,83:33:169:0.491:2	./.	./.	./.	./.	0/1:96,69:34:165:0.418:2	0/1:93,73:33:166:0.440:2	0/1:83,74:33:158:0.471:2
chr14	31642537	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:33:150:0.027:2	./.	./.	./.	./.	./.
chr14	31647241	rs2274201	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:38,46:33:84:0.548:2	0/1:33,21:30:54:0.389:2	./.	0/1:83,45:33:128:0.352:2	0/1:53,27:33:80:0.338:2	0/1:66,53:32:119:0.445:2	./.	0/1:75,46:33:121:0.380:2	0/1:0,90:33:90:1.00:2	0/1:61,39:32:100:0.390:2	0/1:0,97:33:97:1.00:2
chr14	31647439	rs33983486	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,16:32:37:0.432:2	./.	./.	./.	./.	./.
chr14	31647448	rs34666986	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,12:31:29:0.414:2	./.	./.	./.	0/1:20,11:31:31:0.355:2	./.	./.
chr14	31765126	rs61741258	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,44:33:104:0.423:2
chr14	31774128	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:32:153:0.026:2	./.	./.	./.	./.	./.
chr14	31792968	rs192205988	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,80:32:147:0.544:2
chr14	31813220	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:33:44:0.091:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	31819047	rs3736918	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,40:30:40:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,42:31:42:1.00:2	0/1:39,30:30:69:0.435:2
chr14	31819913	rs7158257	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,15:33:15:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,17:33:17:1.00:2	0/1:19,11:32:30:0.367:2
chr14	31852790	rs17661360	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,44:28:105:0.419:2
chr14	31852828	rs201904415	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,63:33:127:0.496:2
chr14	31926584	rs17097904	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:30,4:32:34:0.118:2	./.	0/1:38,3:32:41:0.073:2	./.	0/1:50,12:30:62:0.194:2	./.	0/1:45,7:32:52:0.135:2	0/1:17,6:34:23:0.261:2	0/1:40,4:32:44:0.091:2	0/1:19,3:31:22:0.136:2
chr14	31926599	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:32:55:0.073:2	./.	./.	./.	./.	./.
chr14	32560529	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:32:145:0.028:2	./.	./.	./.	./.
chr14	32560538	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:32:160:0.025:2	./.	./.	./.	./.
chr14	32561027	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,4:32:44:0.091:2	./.	./.	./.	./.	./.	./.
chr14	32562733	rs151151743	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,29:33:49:0.592:2
chr14	33004874	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:32:177:0.023:2	./.	./.	./.
chr14	33004876	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:34:110:0.036:2	./.
chr14	33004975	rs35436895	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,12:33:20:0.600:2	./.	0/1:62,39:32:101:0.386:2	./.	./.	0/1:81,49:33:130:0.377:2	./.	./.	./.
chr14	33014869	rs3742926	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:30:9:0.444:2	./.	0/1:56,36:30:93:0.391:2	./.	./.	0/1:42,23:32:65:0.354:2	./.	./.	./.
chr14	33015014	rs7150894	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,10:32:16:0.625:2	0/1:24,31:31:55:0.564:2	0/1:0,22:31:22:1.00:2	./.	0/1:24,12:29:36:0.333:2	0/1:28,23:32:51:0.451:2	0/1:0,78:33:78:1.00:2	0/1:27,19:31:46:0.413:2	0/1:41,35:32:76:0.461:2
chr14	33015082	rs17099240	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:33:14:0.429:2	./.	0/1:14,23:32:37:0.622:2	./.	./.	0/1:48,34:31:82:0.415:2	./.	./.	./.
chr14	33015397	rs45477296	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.	0/1:25,10:32:35:0.286:2	./.	./.	0/1:23,30:33:53:0.566:2	./.	./.	./.
chr14	33046388	rs1950703	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:33:94:1.00:2	0/1:0,67:33:67:1.00:2	0/1:0,7:32:7:1.00:2	0/1:49,55:33:104:0.529:2	./.	0/1:44,59:33:103:0.573:2	0/1:0,96:33:96:1.00:2	0/1:63,54:33:117:0.462:2	0/1:0,133:33:133:1.00:2	./.	0/1:0,179:33:179:1.00:2
chr14	33291494	rs11845640	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,31:29:59:0.525:2	0/1:11,15:30:26:0.577:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	33292503	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	33292743	rs2239647	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,49:33:80:0.613:2	0/1:19,25:30:44:0.568:2	0/1:2,4:32:6:0.667:2	0/1:0,58:32:58:1.00:2	./.	0/1:58,33:33:91:0.363:2	./.	0/1:0,79:33:79:1.00:2	./.	0/1:40,34:33:74:0.459:2	./.
chr14	33292914	rs2239648	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,22:32:37:0.595:2	0/1:7,5:32:12:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	33293022	rs1051694	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,25:29:25:1.00:2	./.	0/1:10,13:29:23:0.565:2	./.	./.	./.	./.	./.
chr14	33293122	rs1051695	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:29,18:29:47:0.383:2	0/1:9,23:28:32:0.719:2	./.	0/1:0,61:28:61:1.00:2	./.	0/1:25,25:28:50:0.500:2	./.	0/1:0,51:29:51:1.00:2	./.	0/1:22,24:28:46:0.522:2	./.
chr14	33293531	rs4647899	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:30:12:0.583:2	./.	./.	./.	./.	0/1:4,137:29:141:0.972:2	./.	0/1:54,68:30:122:0.557:2	./.
chr14	33293898	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,3:33:41:0.073:2	./.
chr14	34269167	rs12434716	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,55:31:55:1.00:2	./.	./.	./.	./.	./.
chr14	34985645	rs7797	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,84:32:185:0.454:2	0/1:59,64:32:123:0.520:2	0/1:9,16:32:25:0.640:2	0/1:3,179:33:182:0.984:2	0/1:3,174:32:177:0.983:2	0/1:96,96:32:192:0.500:2	./.	0/1:79,110:33:189:0.582:2	0/1:84,97:34:181:0.536:2	0/1:71,86:33:157:0.548:2	0/1:98,89:33:187:0.476:2
chr14	35062312	rs12432539	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,108:32:108:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,91:31:91:1.00:2	0/1:73,38:32:111:0.342:2	0/1:0,90:32:90:1.00:2	0/1:0,137:32:137:1.00:2	0/1:70,65:33:135:0.481:2	0/1:0,103:32:103:1.00:2	0/1:0,140:32:140:1.00:2
chr14	35078905	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:33:186:0.022:2	./.
chr14	35078915	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:32:180:0.022:2	./.
chr14	35099099	rs11847568	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:18,20:32:38:0.526:2	0/1:13,10:33:23:0.435:2	0/1:1,7:32:8:0.875:2	./.	./.	0/1:33,16:33:49:0.327:2	0/1:0,46:32:46:1.00:2	0/1:35,28:32:63:0.444:2	0/1:0,58:32:58:1.00:2	0/1:17,31:32:48:0.646:2	0/1:20,14:31:34:0.412:2
chr14	35228049	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,11:29:27:0.407:2	./.
chr14	35230980	rs45620534	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,72:31:152:0.474:2	./.	./.	./.	./.	./.	./.	./.
chr14	35231108	rs1044140	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,89:31:193:0.461:2	./.	./.	./.	./.	./.	./.	./.
chr14	35242828	rs2275145	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:107,71:32:178:0.399:2	0/1:63,54:32:117:0.462:2	0/1:0,8:31:8:1.00:2	./.	0/1:91,44:31:135:0.326:2	./.	0/1:4,114:31:118:0.966:2	0/1:2,189:31:191:0.990:2	0/1:121,74:33:195:0.379:2	./.	0/1:105,87:31:193:0.453:2
chr14	35263983	rs17102745	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:25,20:32:45:0.444:2	0/1:10,10:33:20:0.500:2	./.	./.	./.	./.	0/1:24,19:32:43:0.442:2	./.	0/1:31,32:33:63:0.508:2	./.	./.
chr14	35331288	rs17592803	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,50:32:111:0.450:2	./.	./.	./.	./.	./.	./.	./.
chr14	35470206	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,4:33:39:0.103:2
chr14	35482608	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:35:54:0.074:2	./.
chr14	35522492	rs113488536	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,18:32:32:0.563:2	./.	./.	./.
chr14	35546373	rs3211139	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,62:33:155:0.400:2	./.	./.	0/1:81,43:31:124:0.347:2	0/1:124,60:31:184:0.326:2	./.	./.	./.
chr14	35591174	rs1056879	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,6:34:14:0.429:2	0/1:73,38:32:111:0.342:2	0/1:0,81:32:81:1.00:2	./.	0/1:82,44:33:126:0.349:2	0/1:83,62:33:145:0.428:2	0/1:0,63:33:63:1.00:2	./.	0/1:40,22:33:62:0.355:2
chr14	35592538	rs941653	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,18:33:18:1.00:2	./.	./.	./.	0/1:15,17:33:32:0.531:2	./.	0/1:34,26:33:60:0.433:2
chr14	35735967	rs11156878	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:80,73:33:153:0.477:2	0/1:43,42:31:85:0.494:2	./.	0/1:84,106:32:190:0.558:2	./.	0/1:2,162:32:164:0.988:2	./.	./.	./.	./.	./.
chr14	35761675	rs1048990	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,13:33:20:0.650:2	./.	0/1:2,103:32:105:0.981:2	./.	0/1:105,4:32:109:0.037:2	./.	0/1:65,53:33:118:0.449:2	0/1:58,44:31:102:0.431:2	0/1:78,68:32:146:0.466:2
chr14	35783656	rs13393	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,59:33:132:0.447:2	./.	./.
chr14	35871217	rs8904	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,42:30:83:0.512:2	0/1:30,21:31:51:0.412:2	0/1:3,4:32:7:0.571:2	0/1:56,43:32:99:0.434:2	./.	0/1:71,46:31:117:0.393:2	0/1:77,63:31:140:0.450:2	0/1:100,80:31:180:0.444:2	./.	0/1:62,29:32:91:0.319:2	0/1:72,65:32:137:0.474:2
chr14	35872926	rs1050851	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:28,12:33:40:0.300:2	0/1:13,14:32:27:0.519:2	./.	./.	0/1:48,40:32:88:0.455:2	./.	./.	0/1:45,48:32:93:0.516:2	./.	0/1:34,23:32:57:0.404:2	./.
chr14	35873770	rs1957106	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:25:9:0.444:2	./.	./.	0/1:32,42:28:74:0.568:2	0/1:1,76:29:77:0.987:2	0/1:43,61:29:104:0.587:2	./.	./.	0/1:18,24:29:42:0.571:2
chr14	36003618	rs144835486	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:32:4:0.750:2	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	36004075	rs1958260	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,13:30:13:1.00:2	0/1:0,9:31:9:1.00:2	./.	0/1:0,10:32:10:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,7:28:7:1.00:2
chr14	36004121	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:27:45:0.089:2	./.	./.	./.	./.	./.
chr14	36005659	rs2296919	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,12:30:22:0.545:2	./.	./.	0/1:0,16:33:16:1.00:2	0/1:6,10:32:16:0.625:2	0/1:6,11:33:17:0.647:2
chr14	36064887	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,5:28:93:0.054:2	./.	./.	./.
chr14	36064900	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:32:106:0.038:2	./.	./.	./.
chr14	36074840	rs45615938	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,93:31:199:0.470:2	./.	./.	./.	./.
chr14	36096479	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.	0/1:192,4:34:196:0.020:2	./.	./.	./.	./.
chr14	36104739	rs200150788	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,4:31:52:0.077:2	./.	./.	0/1:187,9:31:196:0.046:2	0/1:185,12:32:197:0.061:2	./.	./.	./.	./.
chr14	36123589	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:33:111:0.036:2	./.	./.
chr14	36147273	rs144245620	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,3:33:48:0.063:2	./.	./.
chr14	36153177	rs2274068	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:33:8:0.375:2	./.	./.	0/1:46,23:31:69:0.333:2	./.	0/1:88,5:33:93:0.054:2	0/1:0,43:33:43:1.00:2	0/1:29,21:33:50:0.420:2	0/1:57,40:33:97:0.412:2
chr14	36155771	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:33:168:0.024:2	./.
chr14	36155819	rs142557972	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:33:173:0.023:2	./.
chr14	36190995	rs201744354	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:76,11:32:87:0.126:2	./.	./.	0/1:80,16:31:96:0.167:2	0/1:57,8:32:65:0.123:2	0/1:65,7:30:72:0.097:2	./.	./.	0/1:99,10:33:109:0.092:2	0/1:61,5:33:67:0.076:2	./.
chr14	36191030	rs2296168	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,24:32:49:0.490:2	./.	./.	./.	./.	./.
chr14	36192383	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:108,4:33:113:0.036:2	./.	./.	./.	./.	./.	0/1:109,5:30:115:0.044:2	./.	./.	./.	./.
chr14	36194277	rs144614582	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,52:32:118:0.441:2	./.	./.	./.
chr14	36194326	rs181597496	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:33:16:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	36211597	rs147632848	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,61:32:164:0.372:2	./.	./.	./.	./.	./.
chr14	36211718	rs200368277	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:171,22:33:193:0.114:2	0/1:154,7:32:161:0.043:2	0/1:44,3:33:47:0.064:2	0/1:173,18:33:191:0.094:2	0/1:161,16:31:177:0.090:2	0/1:181,18:31:199:0.090:2	./.	./.	0/1:178,18:33:196:0.092:2	0/1:171,22:32:193:0.114:2	./.
chr14	36219861	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:163,4:32:167:0.024:2	./.	./.	./.	./.	./.	./.
chr14	36789729	rs3168891	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,30:30:30:1.00:2	0/1:0,16:32:16:1.00:2	./.	0/1:0,44:32:44:1.00:2	0/1:0,48:31:48:1.00:2	0/1:56,23:32:79:0.291:2	0/1:0,79:32:79:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,68:33:68:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,70:31:70:1.00:2
chr14	36789775	rs2899849	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,22:32:22:1.00:2	0/1:0,14:31:14:1.00:2	./.	0/1:0,35:30:35:1.00:2	0/1:0,36:29:37:1.00:2	0/1:35,13:29:48:0.271:2	0/1:0,55:29:55:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,47:30:47:1.00:2
chr14	36789795	rs11558802	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,13:30:13:1.00:2	0/1:0,10:31:10:1.00:2	./.	0/1:0,30:29:30:1.00:2	0/1:0,28:29:28:1.00:2	0/1:27,11:30:38:0.289:2	0/1:0,48:29:48:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,34:31:34:1.00:2
chr14	37135752	rs12881240	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,38:31:68:0.559:2	./.	0/1:24,54:30:78:0.692:2	0/1:35,29:32:64:0.453:2	./.	0/1:13,15:32:28:0.536:2
chr14	37135753	rs4904210	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,3:32:11:0.273:2	0/1:1,60:32:61:0.984:2	0/1:35,18:32:53:0.340:2	./.	./.	0/1:56,23:32:79:0.291:2	./.	0/1:0,41:32:41:1.00:2	./.
chr14	37203697	rs10135196	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,58:32:116:0.500:2	0/1:49,56:31:105:0.533:2	./.	./.	./.	0/1:59,41:32:100:0.410:2	./.	./.
chr14	37969134	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,52:33:117:0.444:2
chr14	38016099	rs991786	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,17:31:52:0.327:2	./.	./.	0/1:34,28:32:62:0.452:2	./.
chr14	38060646	rs33984772	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,21:29:53:0.396:2	./.	./.	0/1:38,21:29:59:0.356:2	./.
chr14	38061742	rs7144658	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:7,7:26:14:0.500:2	0/1:4,3:30:7:0.429:2	0/1:0,2:29:2:1.00:2	0/1:13,11:30:24:0.458:2	0/1:14,10:30:24:0.417:2	0/1:12,15:29:28:0.556:2	./.	0/1:0,18:29:18:1.00:2	0/1:3,11:31:14:0.786:2	./.	0/1:0,20:29:20:1.00:2
chr14	38266074	rs9805910	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:35,37:32:72:0.514:2	0/1:12,19:31:31:0.613:2	0/1:0,11:32:11:1.00:2	./.	0/1:1,74:31:75:0.987:2	0/1:34,54:32:88:0.614:2	0/1:47,33:31:80:0.413:2	./.	0/1:55,51:32:106:0.481:2	0/1:39,34:32:73:0.466:2	0/1:1,93:32:94:0.989:2
chr14	38273922	rs12896790	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,47:32:47:1.00:2	0/1:34,31:34:65:0.477:2	0/1:38,33:32:71:0.465:2	./.
chr14	38273954	rs17768654	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,54:32:101:0.535:2	./.
chr14	38277999	rs4901284	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,178:31:180:0.989:2	./.	0/1:111,88:30:199:0.442:2	0/1:115,76:31:191:0.398:2	0/1:1,185:31:186:0.995:2	0/1:101,85:32:186:0.457:2	0/1:99,83:32:182:0.456:2	./.
chr14	38679379	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,3:37:106:0.028:2	./.	./.	./.
chr14	38679473	rs2228497	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:47,48:30:95:0.505:2	0/1:24,30:31:54:0.556:2	./.	0/1:75,72:30:147:0.490:2	./.	0/1:71,63:30:134:0.470:2	./.	0/1:3,153:29:156:0.981:2	0/1:78,50:31:128:0.391:2	0/1:45,50:30:95:0.526:2	0/1:54,47:29:101:0.465:2
chr14	38680080	rs12889916	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:42,48:29:90:0.533:2	0/1:24,21:30:45:0.467:2	./.	0/1:99,55:30:154:0.357:2	./.	0/1:57,43:30:100:0.430:2	./.	0/1:0,87:30:87:1.00:2	0/1:58,47:31:105:0.448:2	0/1:51,36:30:87:0.414:2	0/1:40,59:29:99:0.596:2
chr14	38680740	rs33926928	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,15:30:32:0.469:2	./.	0/1:16,13:29:29:0.448:2	./.	./.	0/1:17,21:28:38:0.553:2	./.
chr14	38681113	rs1135473	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,11:33:20:0.550:2	./.	0/1:22,40:32:62:0.645:2	./.	0/1:44,38:31:82:0.463:2	./.	./.	0/1:35,52:31:87:0.598:2	./.
chr14	38681226	rs1135474	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:68,65:33:133:0.489:2	0/1:39,33:33:72:0.458:2	./.	0/1:100,63:33:163:0.387:2	./.	0/1:73,76:32:149:0.510:2	./.	./.	0/1:99,54:34:153:0.353:2	0/1:59,73:33:132:0.553:2	0/1:102,74:34:176:0.420:2
chr14	38681269	rs4143959	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.	0/1:24,29:31:53:0.547:2	./.	0/1:28,20:31:48:0.417:2	./.	./.	0/1:35,30:32:65:0.462:2	./.
chr14	38725285	rs2812035	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:24,25:31:49:0.510:2	0/1:15,11:32:26:0.423:2	0/1:4,5:32:9:0.556:2	./.	0/1:0,90:31:90:1.00:2	0/1:2,81:31:83:0.976:2	0/1:41,29:31:70:0.414:2	0/1:0,73:31:74:1.00:2	./.	0/1:19,26:32:45:0.578:2	0/1:24,37:31:61:0.607:2
chr14	39517925	rs11556216	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:33:5:0.800:2	0/1:3,2:35:5:0.400:2	0/1:5,5:34:10:0.500:2	0/1:0,2:34:2:1.00:2	./.	./.	0/1:0,18:33:18:1.00:2	./.
chr14	39545199	rs17108797	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,12:29:17:0.706:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	39556185	rs8018720	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,21:32:51:0.412:2	0/1:17,8:33:25:0.320:2	0/1:5,3:32:8:0.375:2	0/1:0,51:32:51:1.00:2	0/1:25,12:32:37:0.324:2	0/1:33,15:32:48:0.313:2	0/1:0,48:32:48:1.00:2	0/1:31,28:32:59:0.475:2	0/1:0,41:34:41:1.00:2	0/1:0,56:33:57:1.00:2	0/1:0,56:33:56:1.00:2
chr14	39583599	rs145062289	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,28:33:71:0.394:2
chr14	39601190	rs74640611	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:18,8:22:26:0.308:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,6:22:18:0.333:2	0/1:37,6:25:43:0.140:2
chr14	39644498	rs1061583	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:30:6:0.667:2	./.	./.	./.	./.	0/1:40,26:28:66:0.394:2	./.	./.	0/1:23,26:29:49:0.531:2
chr14	39648629	rs11558739	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,55:32:133:0.414:2	./.	./.	0/1:29,25:32:54:0.463:2	./.	./.	./.	./.
chr14	39650234	rs2180792	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:32:16:1.00:2	0/1:0,9:32:9:1.00:2	0/1:2,3:31:5:0.600:2	0/1:0,21:32:21:1.00:2	0/1:0,13:31:13:1.00:2	0/1:6,13:31:19:0.684:2	0/1:0,7:31:7:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,28:32:28:1.00:2
chr14	39650824	rs1050136	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,12:31:27:0.444:2	./.	./.	0/1:14,19:30:33:0.576:2	./.	./.	./.
chr14	39650924	rs13021	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:12,17:33:29:0.586:2	0/1:18,10:33:28:0.357:2	./.	./.	0/1:11,6:34:17:0.353:2	./.	./.	0/1:23,17:32:40:0.425:2	./.	./.	./.
chr14	39703324	rs7141840	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:30:8:0.625:2	./.	0/1:20,12:31:32:0.375:2	./.	0/1:13,12:31:25:0.480:2	0/1:38,33:29:71:0.465:2	0/1:0,69:31:69:1.00:2	./.	0/1:1,55:29:56:0.982:2
chr14	39706174	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:33:87:0.046:2	./.	./.
chr14	39716201	rs11845046	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,17:32:25:0.680:2	./.	./.	0/1:15,8:33:23:0.348:2	./.	./.	0/1:32,19:33:51:0.373:2
chr14	39716526	rs150000006	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,24:32:65:0.369:2	./.	./.	./.	./.	./.
chr14	39716808	rs3825549	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,13:32:22:0.591:2	./.
chr14	39716830	rs142210112	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,8:31:28:0.286:2	./.	./.	./.	./.	./.	./.
chr14	39722023	rs10134365	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,9:31:26:0.346:2	./.	./.	0/1:17,12:32:29:0.414:2	./.	./.	0/1:23,17:32:40:0.425:2
chr14	39722294	rs145877161	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,22:32:58:0.379:2	./.	./.	./.
chr14	39734596	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,19:32:35:0.543:2
chr14	39736680	rs7140561	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,16:31:26:0.615:2	0/1:15,12:33:27:0.444:2	0/1:2,4:33:6:0.667:2	0/1:29,27:33:56:0.482:2	0/1:0,43:32:43:1.00:2	0/1:40,21:30:61:0.344:2	0/1:0,47:32:47:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,41:30:41:1.00:2
chr14	39763209	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:33:108:0.037:2
chr14	39763224	rs141828907	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,4:29:82:0.049:2	./.	./.	./.	./.	./.	0/1:71,6:30:77:0.078:2	0/1:102,6:28:108:0.056:2
chr14	39763230	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:31:110:0.036:2
chr14	39763267	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.	./.	0/1:56,6:32:62:0.097:2	0/1:79,10:32:89:0.112:2
chr14	39764176	rs17855896	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,120:33:120:1.00:2	./.	./.
chr14	39773506	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,6:32:43:0.140:2	0/1:72,4:33:76:0.053:2	./.	./.
chr14	39773510	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:33:73:0.055:2	./.
chr14	39773548	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,6:31:99:0.061:2	0/1:139,4:32:143:0.028:2	./.	./.
chr14	39773551	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,6:31:98:0.061:2	0/1:144,4:31:148:0.027:2	0/1:108,6:31:114:0.053:2	./.
chr14	39777676	rs1950952	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,23:33:55:0.418:2	0/1:14,17:33:31:0.548:2	./.	0/1:38,27:33:65:0.415:2	0/1:23,18:32:41:0.439:2	0/1:26,15:32:41:0.366:2	0/1:2,36:32:38:0.947:2	0/1:16,9:33:25:0.360:2	./.	0/1:3,35:32:38:0.921:2	0/1:32,34:32:66:0.515:2
chr14	39782626	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:32:117:0.034:2	./.	./.
chr14	39784012	rs12436164	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,34:29:95:0.358:2	./.	./.	./.	0/1:53,32:28:85:0.376:2
chr14	39784014	rs2415539	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,35:28:62:0.565:2	0/1:22,32:30:54:0.593:2	0/1:6,9:28:15:0.600:2	0/1:49,32:30:81:0.395:2	0/1:9,103:28:112:0.920:2	0/1:37,30:29:67:0.448:2	0/1:6,83:30:89:0.933:2	0/1:10,49:29:59:0.831:2	0/1:9,73:30:82:0.890:2	0/1:4,99:30:104:0.961:2	0/1:8,80:29:89:0.909:2
chr14	39818028	rs1140952	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,7:32:9:0.778:2	0/1:3,109:33:112:0.973:2	0/1:18,29:32:47:0.617:2	0/1:49,43:32:92:0.467:2	0/1:42,21:32:63:0.333:2	0/1:37,42:31:79:0.532:2	0/1:45,48:33:93:0.516:2	./.	0/1:0,92:32:92:1.00:2
chr14	39818109	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,6:29:85:0.071:2	./.	./.	./.
chr14	39818131	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,7:30:79:0.089:2	./.	./.	./.
chr14	39818145	rs1060878	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,35:32:65:0.538:2	0/1:20,18:33:38:0.474:2	./.	0/1:32,31:33:63:0.492:2	0/1:18,27:32:45:0.600:2	0/1:26,30:32:56:0.536:2	0/1:16,21:32:37:0.568:2	0/1:37,41:32:78:0.526:2	0/1:42,34:33:76:0.447:2	0/1:28,28:32:56:0.500:2	./.
chr14	39818167	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,6:31:69:0.087:2	./.	./.	./.
chr14	39819407	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,4:32:37:0.108:2	./.
chr14	42356114	rs190113136	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,34:31:76:0.447:2	./.	./.	./.	./.	./.	./.
chr14	42360633	rs6572117	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:96,82:32:178:0.461:2	0/1:56,49:32:105:0.467:2	0/1:0,21:32:21:1.00:2	0/1:1,175:33:176:0.994:2	./.	0/1:1,183:32:184:0.995:2	0/1:1,168:32:169:0.994:2	0/1:175,4:34:179:0.022:2	0/1:0,167:33:167:1.00:2	0/1:104,70:32:174:0.402:2	0/1:90,88:32:178:0.494:2
chr14	44974189	rs11621923	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:10,7:32:17:0.412:2	0/1:15,3:34:18:0.167:2	./.	0/1:12,14:33:26:0.538:2	./.	0/1:9,7:27:16:0.438:2	./.	0/1:10,9:32:19:0.474:2	0/1:16,15:32:31:0.484:2	0/1:12,9:32:21:0.429:2	0/1:7,15:32:22:0.682:2
chr14	44974922	rs3825632	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:17,16:33:33:0.485:2	0/1:17,10:32:27:0.370:2	./.	0/1:34,20:33:54:0.370:2	./.	0/1:25,17:32:42:0.405:2	./.	0/1:45,18:32:63:0.286:2	0/1:39,18:33:57:0.316:2	0/1:25,9:33:34:0.265:2	0/1:38,17:32:55:0.309:2
chr14	44974966	rs1959379	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,23:32:50:0.460:2	0/1:13,18:33:31:0.581:2	./.	./.	./.	0/1:22,22:32:44:0.500:2	0/1:20,15:31:35:0.429:2	./.	./.	./.	./.
chr14	44975052	rs3825630	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,14:31:38:0.368:2	0/1:19,10:33:29:0.345:2	./.	./.	./.	0/1:34,30:32:64:0.469:2	0/1:32,19:33:51:0.373:2	./.	./.	./.	./.
chr14	44975510	rs372153461	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,28:33:70:0.400:2	0/1:24,10:32:34:0.294:2	0/1:4,3:28:7:0.429:2	0/1:23,27:33:51:0.540:2	./.	0/1:27,28:32:55:0.509:2	0/1:43,3:34:46:0.065:2	0/1:20,12:32:32:0.375:2	0/1:28,24:34:52:0.462:2	0/1:18,20:33:38:0.526:2	0/1:50,35:33:85:0.412:2
chr14	44975511	rs45478391	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,25:33:26:0.962:2	./.	./.	./.	0/1:24,24:33:48:0.500:2	./.	./.
chr14	44975606	rs3809429	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:30,29:31:59:0.492:2	0/1:11,9:32:20:0.450:2	./.	./.	0/1:36,3:31:39:0.077:2	0/1:28,25:31:53:0.472:2	0/1:15,21:31:36:0.583:2	./.	./.	./.	./.
chr14	44975682	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:32:111:0.036:2	./.	./.	./.
chr14	45414295	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,6:30:130:0.046:2	./.	./.
chr14	45432870	rs3825629	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,4:33:10:0.400:2	./.	./.	./.	./.
chr14	45433155	rs3742591	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,37:32:71:0.521:2	./.	./.	./.	./.
chr14	45475265	rs138569436	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,12:30:32:0.375:2	./.
chr14	45515838	rs74907291	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,51:31:106:0.481:2	./.	./.	./.	./.
chr14	45564445	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:32:101:0.040:2	./.	./.	./.	./.
chr14	45606287	rs10138997	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,11:32:30:0.367:2	./.	./.	./.	./.
chr14	45628370	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:140,4:31:145:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr14	45644589	rs1367580	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,5:30:12:0.417:2	./.	0/1:3,3:31:6:0.500:2	./.	./.	./.	0/1:10,6:31:16:0.375:2
chr14	45645715	rs45604036	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:31:7:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	45650900	rs78211950	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,3:31:19:0.158:2	./.	./.	./.	./.	./.	0/1:22,23:32:45:0.511:2
chr14	45654460	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,84:33:190:0.442:2	./.	./.
chr14	45658024	rs61746943	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,27:33:80:0.338:2	./.	./.
chr14	45665468	rs3736772	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,29:32:52:0.569:2	./.	0/1:54,34:33:88:0.386:2	./.	./.	./.	0/1:44,55:32:99:0.556:2
chr14	45665661	rs45557033	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:33:15:0.533:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	45669122	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:31:119:0.034:2	./.	./.	./.
chr14	45687647	rs144317902	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,24:31:40:0.600:2	./.	./.	./.	./.
chr14	45693648	rs35223850	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,32:31:65:0.492:2	./.	./.
chr14	45696037	rs34101857	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,13:31:36:0.361:2	./.	0/1:7,12:32:19:0.632:2	./.	./.	./.	0/1:42,39:32:81:0.481:2
chr14	45700409	rs61741592	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,158:32:161:0.981:2	./.	./.	./.	./.	0/1:115,70:33:185:0.378:2	0/1:78,97:32:176:0.554:2	./.
chr14	45711594	rs1266209	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,12:32:46:0.261:2	./.	0/1:22,21:32:43:0.488:2	./.	./.	./.	0/1:50,45:33:95:0.474:2
chr14	47389221	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,4:32:87:0.046:2	./.	./.	./.	./.	./.	./.	./.
chr14	47426637	rs12590500	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,34:32:74:0.466:2	0/1:22,21:32:43:0.488:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	47504277	rs200949742	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:120,10:17:131:0.077:2	./.	./.	0/1:130,19:11:149:0.128:2	0/1:132,26:9:158:0.165:2	0/1:120,19:10:139:0.137:2	./.	./.	./.	0/1:126,20:13:147:0.137:2	0/1:107,19:13:126:0.151:2
chr14	50065882	rs185628544	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,16:29:38:0.421:2	./.	./.	./.	./.	./.	./.
chr14	50074122	rs17121605	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,13:32:35:0.371:2	0/1:0,41:32:41:1.00:2	./.	0/1:0,39:32:39:1.00:2
chr14	50074520	rs7148147	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,16:32:29:0.552:2	0/1:0,28:33:28:1.00:2	./.	0/1:0,36:32:36:1.00:2
chr14	50085571	rs1054427	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,8:29:16:0.500:2	./.	./.	./.	./.	0/1:87,53:30:140:0.379:2	0/1:2,127:32:129:0.984:2	./.	0/1:1,146:32:147:0.993:2
chr14	50085627	rs3088024	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:32:192:0.021:2	./.
chr14	50085654	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,6:28:171:0.035:2	0/1:108,4:33:112:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	50085801	rs140884427	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:110,5:25:115:0.043:2	./.	./.	0/1:156,5:29:161:0.031:2	./.	./.	./.
chr14	50085841	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:33:79:0.051:2
chr14	50085856	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,3:33:50:0.060:2	./.	./.	./.	./.	./.
chr14	50088085	rs140584714	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:13,13:28:26:0.500:2	0/1:7,6:30:13:0.462:2	./.	./.	./.	./.	0/1:11,17:29:28:0.607:2	./.	./.	./.	./.
chr14	50092471	rs9989177	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,8:29:17:0.471:2	0/1:67,62:32:129:0.481:2	0/1:39,51:31:90:0.567:2	0/1:52,60:31:112:0.536:2	0/1:50,50:32:100:0.500:2	0/1:57,64:31:121:0.529:2	./.	0/1:0,125:32:126:1.00:2	./.
chr14	50100386	rs2985687	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:29:3:1.00:2	0/1:34,19:29:53:0.358:2	0/1:22,9:29:31:0.290:2	0/1:30,16:28:46:0.348:2	0/1:20,8:28:28:0.286:2	0/1:0,35:28:35:1.00:2	0/1:1,35:30:36:0.972:2	0/1:0,21:30:21:1.00:2	0/1:0,18:26:18:1.00:2
chr14	50101370	rs2985685	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:30:5:1.00:2	0/1:8,14:30:22:0.636:2	0/1:5,11:30:16:0.688:2	0/1:4,6:29:10:0.600:2	0/1:2,8:31:10:0.800:2	0/1:0,13:29:13:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,4:29:4:1.00:2	0/1:0,5:30:5:1.00:2
chr14	50101682	rs2985684	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:31:5:1.00:2	0/1:7,12:31:19:0.632:2	0/1:5,16:33:21:0.762:2	0/1:12,8:30:20:0.400:2	0/1:6,5:30:11:0.455:2	0/1:0,16:32:16:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,12:31:12:1.00:2
chr14	50110365	rs3218799	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,25:32:61:0.410:2	./.	0/1:33,35:32:68:0.515:2
chr14	50120858	rs3212323	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,17:30:29:0.586:2	0/1:0,36:32:36:1.00:2	./.	0/1:0,53:31:53:1.00:2
chr14	50131845	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:33:48:0.083:2	./.	./.	./.	./.	./.
chr14	50131846	rs3218791	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:30:5:0.600:2	./.	./.	./.	./.	0/1:43,31:29:74:0.419:2	0/1:0,66:31:66:1.00:2	./.	0/1:1,68:31:69:0.986:2
chr14	50195679	rs4301946	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,183:29:184:1.00:2	0/1:1,93:28:94:0.989:2	0/1:0,13:30:13:1.00:2	0/1:0,189:30:189:1.00:2	0/1:0,130:29:130:1.00:2	0/1:0,188:29:188:1.00:2	0/1:1,145:29:146:0.993:2	0/1:1,192:29:193:0.995:2	0/1:0,188:30:188:1.00:2	0/1:0,163:29:163:1.00:2	0/1:0,187:29:187:1.00:2
chr14	50210491	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.
chr14	50235251	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,77:32:142:0.542:2	0/1:26,40:31:66:0.606:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	50251369	rs10143621	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,84:29:84:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,82:30:82:1.00:2	0/1:0,64:29:64:1.00:2	0/1:0,97:29:97:1.00:2	0/1:0,51:29:52:1.00:2	0/1:0,84:29:84:1.00:2	0/1:0,115:30:115:1.00:2	0/1:0,109:29:109:1.00:2	0/1:0,109:29:109:1.00:2
chr14	50280688	rs3126195	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,108:32:108:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,99:31:99:1.00:2	0/1:1,68:31:69:0.986:2	0/1:0,112:31:113:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,124:31:124:1.00:2	0/1:0,152:32:152:1.00:2	0/1:0,102:31:102:1.00:2	0/1:0,193:32:193:1.00:2
chr14	50298962	rs3100906	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,116:32:116:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,142:31:142:1.00:2	0/1:0,92:31:92:1.00:2	0/1:0,151:31:151:1.00:2	0/1:0,82:31:82:1.00:2	0/1:0,166:32:166:1.00:2	0/1:0,178:33:178:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,167:32:167:1.00:2
chr14	50307454	rs149602229	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,17:31:40:0.425:2	./.	./.	./.	./.	./.	./.
chr14	50318287	rs75778865	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,11:29:18:0.611:2	./.	./.	./.	./.	./.	./.
chr14	50361074	rs112211624	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,9:32:17:0.529:2	0/1:57,40:31:97:0.412:2	./.	./.	./.	0/1:64,58:32:122:0.475:2	0/1:55,49:32:104:0.471:2	./.	0/1:81,45:31:126:0.357:2
chr14	50361154	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,7:17:41:0.171:2	./.	./.
chr14	50361164	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,7:15:37:0.189:2	0/1:33,9:14:42:0.214:2	./.	./.
chr14	50361387	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:30:106:0.038:2	./.	./.	./.	./.
chr14	50361494	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,97:30:166:0.588:2	0/1:53,38:32:91:0.418:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	50361615	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:34:109:0.037:2	./.
chr14	50362165	rs117302051	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,44:32:96:0.458:2
chr14	50472405	rs6572635	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:83,74:33:157:0.471:2	0/1:54,41:33:95:0.432:2	0/1:12,15:31:27:0.556:2	./.	0/1:111,86:32:197:0.437:2	0/1:111,83:32:195:0.428:2	./.	./.	./.	./.	./.
chr14	50579357	rs117179687	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,17:33:44:0.386:2	./.	./.	./.
chr14	50583062	rs200798867	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,7:31:10:0.700:2	./.	./.	./.	./.
chr14	50583083	rs11157729	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,15:30:21:0.714:2	./.	./.	./.	./.	0/1:17,8:30:25:0.320:2	0/1:11,13:30:24:0.542:2	./.	0/1:0,24:30:24:1.00:2	0/1:7,10:30:17:0.588:2	0/1:9,13:30:22:0.591:2
chr14	50585248	rs2227276	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,47:30:100:0.470:2	0/1:41,29:31:70:0.414:2	./.	./.	./.	0/1:67,50:31:117:0.427:2	0/1:77,64:32:141:0.454:2	./.	0/1:1,100:32:101:0.990:2	0/1:59,40:32:99:0.404:2	0/1:68,70:31:138:0.507:2
chr14	50616878	rs2229869	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:90,96:31:186:0.516:2	0/1:63,51:32:114:0.447:2	0/1:0,33:31:33:1.00:2	0/1:105,72:31:177:0.407:2	0/1:5,123:31:128:0.961:2	0/1:109,67:31:176:0.381:2	0/1:96,87:32:183:0.475:2	0/1:0,156:31:156:1.00:2	./.	./.	./.
chr14	50628207	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:164,4:32:168:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr14	50704331	rs4901000	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,134:32:134:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,14:32:14:1.00:2	0/1:89,69:32:158:0.437:2	0/1:0,108:31:108:1.00:2	0/1:0,131:31:131:1.00:2	0/1:0,92:31:93:1.00:2	0/1:0,157:32:157:1.00:2	0/1:0,150:32:150:1.00:2	0/1:65,56:32:121:0.463:2	0/1:0,169:32:169:1.00:2
chr14	50736012	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,3:33:30:0.100:2	./.
chr14	50750699	rs201692645	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,6:18:23:0.261:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	50769717	rs2297995	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,43:32:44:0.977:2	0/1:0,13:32:13:1.00:2	./.	0/1:17,16:33:33:0.485:2	0/1:10,9:32:19:0.474:2	0/1:18,15:31:33:0.455:2	0/1:19,8:30:27:0.296:2	0/1:0,21:32:21:1.00:2	0/1:0,33:32:33:1.00:2	0/1:13,12:32:25:0.480:2	0/1:0,37:30:37:1.00:2
chr14	50778816	rs2275591	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,10:28:10:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,2:30:2:1.00:2	0/1:13,9:28:22:0.409:2	0/1:9,10:28:19:0.526:2	0/1:14,3:29:17:0.176:2	./.	0/1:0,11:30:11:1.00:2	0/1:0,7:29:7:1.00:2	0/1:4,4:30:8:0.500:2	0/1:0,17:29:17:1.00:2
chr14	50788213	rs2275592	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,116:33:122:0.951:2	0/1:0,53:32:53:1.00:2	0/1:0,16:33:16:1.00:2	0/1:85,48:33:133:0.361:2	0/1:58,46:32:104:0.442:2	0/1:60,68:32:128:0.531:2	./.	0/1:1,138:33:139:0.993:2	0/1:1,166:33:167:0.994:2	0/1:51,86:33:137:0.628:2	0/1:0,163:33:163:1.00:2
chr14	50796881	rs9323183	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,15:32:26:0.577:2	0/1:28,5:31:33:0.152:2	0/1:13,6:32:19:0.316:2	./.	./.	./.	./.
chr14	50799126	rs7161563	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,121:33:122:0.992:2	0/1:0,73:33:73:1.00:2	0/1:1,15:33:16:0.938:2	0/1:59,62:32:121:0.512:2	0/1:70,49:31:119:0.412:2	0/1:67,47:32:114:0.412:2	./.	0/1:2,106:32:108:0.981:2	0/1:1,112:33:113:0.991:2	0/1:71,50:33:121:0.413:2	0/1:2,124:33:126:0.984:2
chr14	50802727	rs7148089	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,107:32:107:1.00:2	0/1:0,69:33:69:1.00:2	0/1:0,18:33:18:1.00:2	0/1:79,72:33:151:0.477:2	0/1:73,60:32:133:0.451:2	0/1:83,70:31:153:0.458:2	./.	0/1:1,133:33:134:0.993:2	0/1:0,194:33:194:1.00:2	0/1:63,80:33:143:0.559:2	0/1:0,171:33:171:1.00:2
chr14	50802840	rs7148292	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:33:64:1.00:2	0/1:1,42:32:43:0.977:2	0/1:0,15:33:15:1.00:2	0/1:52,40:32:92:0.435:2	0/1:63,51:32:114:0.447:2	0/1:62,41:32:103:0.398:2	./.	0/1:1,100:33:101:0.990:2	0/1:0,79:33:79:1.00:2	0/1:50,39:33:89:0.438:2	0/1:0,92:33:92:1.00:2
chr14	50824839	rs11157737	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,8:31:23:0.348:2	0/1:10,3:32:13:0.231:2	./.	0/1:0,21:31:21:1.00:2	0/1:10,13:31:23:0.565:2	0/1:22,9:31:31:0.290:2	./.	0/1:0,29:31:29:1.00:2	0/1:0,21:32:21:1.00:2	./.	0/1:1,27:32:28:0.964:2
chr14	50862572	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,4:27:33:0.121:2	./.	./.	./.	./.
chr14	50863799	rs180706861	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,9:31:17:0.529:2	./.	./.	./.	./.
chr14	50863945	rs190089769	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,24:32:51:0.471:2	0/1:28,15:32:44:0.349:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	50901768	rs17780143	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:34:6:0.500:2	./.	./.	./.	./.
chr14	50907128	rs17718015	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,86:33:189:0.457:2
chr14	50923249	rs12881869	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,52:32:94:0.553:2
chr14	51054598	rs35014209	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:34,42:28:76:0.553:2	0/1:26,25:27:51:0.490:2	./.	0/1:43,37:29:80:0.463:2	./.	./.	./.	0/1:46,48:29:94:0.511:2	./.	0/1:40,13:29:53:0.245:2	./.
chr14	51057727	rs1060197	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:33:60:1.00:2	0/1:0,40:32:40:1.00:2	0/1:6,7:30:13:0.538:2	0/1:0,60:32:60:1.00:2	0/1:24,32:31:56:0.571:2	0/1:0,58:31:58:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,55:31:55:1.00:2	0/1:43,38:32:81:0.469:2	0/1:0,77:31:77:1.00:2	0/1:0,64:32:64:1.00:2
chr14	51057733	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:32:74:0.054:2	./.
chr14	51062357	rs3759588	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:23,15:32:38:0.395:2	0/1:12,8:32:20:0.400:2	./.	0/1:19,19:32:38:0.500:2	./.	./.	./.	0/1:20,25:31:45:0.556:2	./.	0/1:14,14:32:28:0.500:2	./.
chr14	51132182	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:148,4:33:152:0.026:2	./.	./.	./.	./.	./.	./.
chr14	51192659	rs1983764	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:92,89:33:181:0.492:2	0/1:53,51:32:104:0.490:2	0/1:9,5:30:14:0.357:2	0/1:96,97:33:193:0.503:2	0/1:71,69:32:140:0.493:2	./.	0/1:84,86:33:170:0.506:2	0/1:102,74:33:176:0.420:2	0/1:101,97:33:198:0.490:2	0/1:81,81:33:162:0.500:2	0/1:99,92:33:191:0.482:2
chr14	51202311	rs2295847	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,9:32:19:0.474:2	0/1:15,5:33:20:0.250:2	./.	./.	./.	./.
chr14	51204996	rs11376	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,133:32:134:0.993:2	0/1:0,93:32:93:1.00:2	0/1:11,16:31:27:0.593:2	0/1:1,139:31:140:0.993:2	0/1:48,52:31:100:0.520:2	./.	0/1:55,50:31:105:0.476:2	0/1:1,112:31:113:0.991:2	0/1:73,64:32:137:0.467:2	0/1:0,112:31:112:1.00:2	0/1:71,64:31:135:0.474:2
chr14	51206145	rs12717411	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,53:31:132:0.402:2	./.	./.	./.	./.
chr14	51221341	rs45578537	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,9:33:19:0.474:2	./.	./.	./.	./.
chr14	51223254	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.	./.
chr14	51223789	rs2073347	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,26:32:57:0.456:2	0/1:24,9:32:33:0.273:2	0/1:0,3:31:3:1.00:2	0/1:20,29:32:49:0.592:2	0/1:19,24:31:43:0.558:2	0/1:0,59:31:59:1.00:2	0/1:0,23:31:23:1.00:2	0/1:24,20:30:44:0.455:2	0/1:23,16:33:39:0.410:2	0/1:0,46:31:46:1.00:2	0/1:37,19:32:56:0.339:2
chr14	51223979	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,42:34:88:0.477:2	./.	./.
chr14	51224374	rs12882191	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,47:29:121:0.388:2	0/1:50,36:30:86:0.419:2	0/1:10,9:32:19:0.474:2	0/1:90,73:29:163:0.448:2	0/1:95,65:30:160:0.406:2	0/1:0,153:29:153:1.00:2	0/1:0,130:30:130:1.00:2	0/1:87,53:30:140:0.379:2	0/1:80,81:30:161:0.503:2	0/1:1,131:30:132:0.992:2	0/1:81,54:30:135:0.400:2
chr14	51224417	rs2236316	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,38:31:81:0.475:2	0/1:53,52:32:105:0.495:2	./.	./.	./.	./.	./.
chr14	51224658	rs2073348	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,67:32:139:0.482:2	0/1:40,46:32:86:0.535:2	./.	./.	./.	0/1:90,78:31:168:0.464:2	0/1:65,72:32:137:0.526:2	./.	0/1:101,77:32:178:0.433:2	./.	0/1:83,82:32:165:0.497:2
chr14	51225132	rs2073349	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,48:32:105:0.457:2	0/1:41,35:31:76:0.461:2	./.	./.	./.	0/1:59,50:32:109:0.459:2	0/1:56,41:31:97:0.423:2	./.	0/1:46,71:32:117:0.607:2	./.	0/1:78,53:31:131:0.405:2
chr14	51227000	rs4901055	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,34:30:60:0.567:2	./.	./.	0/1:21,30:29:51:0.588:2	0/1:42,34:29:76:0.447:2	./.	0/1:0,56:30:56:1.00:2	./.
chr14	51237701	rs17793018	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,153:30:154:0.994:2	0/1:0,72:30:72:1.00:2	0/1:13,16:31:29:0.552:2	0/1:73,77:30:150:0.513:2	0/1:75,48:30:123:0.390:2	0/1:85,68:30:153:0.444:2	0/1:65,78:30:143:0.545:2	./.	0/1:0,129:31:129:1.00:2	./.	0/1:0,153:30:153:1.00:2
chr14	51239067	rs8020503	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:30:92:1.00:2	0/1:0,73:29:73:1.00:2	0/1:0,15:28:15:1.00:2	0/1:0,145:29:145:1.00:2	0/1:0,141:29:141:1.00:2	0/1:0,152:29:152:1.00:2	0/1:0,130:29:130:1.00:2	0/1:0,154:29:156:1.00:2	0/1:0,144:30:144:1.00:2	0/1:0,95:29:95:1.00:2	0/1:0,110:29:110:1.00:2
chr14	51239181	rs61755581	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,6:31:19:0.316:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	51273457	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:33:41:0.098:2
chr14	51345599	rs76391304	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,42:29:109:0.385:2	./.
chr14	51352384	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:31:176:0.023:2	./.	./.	./.
chr14	51352396	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:33:159:0.025:2	./.	./.
chr14	51352608	rs2297893	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:50,51:32:102:0.505:2	0/1:39,29:32:68:0.426:2	0/1:4,10:33:14:0.714:2	./.	0/1:82,50:32:132:0.379:2	./.	./.	./.	./.	./.	./.
chr14	51368610	rs28564871	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,8:32:21:0.381:2	./.	./.	0/1:61,65:32:126:0.516:2	0/1:39,35:32:74:0.473:2	./.	./.	0/1:61,41:32:102:0.402:2	./.
chr14	51370852	rs34800262	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:71,72:33:143:0.503:2	0/1:42,28:33:70:0.400:2	./.	0/1:87,48:32:135:0.356:2	./.	./.	./.	./.	./.	./.	./.
chr14	51371081	rs17123116	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,47:33:82:0.573:2	./.	./.
chr14	51371121	rs4901065	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:33:6:0.500:2	./.	./.	0/1:18,10:30:28:0.357:2	0/1:9,5:31:14:0.357:2	./.	./.	0/1:20,9:32:29:0.310:2	./.
chr14	51372238	rs34313873	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,74:33:130:0.569:2	./.	./.
chr14	51374994	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:32:173:0.023:2
chr14	51376774	rs15669	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,47:32:114:0.412:2	./.	./.	./.	0/1:69,71:33:140:0.507:2
chr14	51378725	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,4:33:106:0.038:2	./.	./.	./.	./.	./.	./.
chr14	51383432	rs2075643	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:27:13:0.385:2	./.	./.	0/1:54,48:29:102:0.471:2	0/1:50,38:29:88:0.432:2	./.	./.	./.	./.
chr14	51387782	rs946616	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,34:31:81:0.420:2	./.	./.	./.	./.
chr14	51411029	rs17123244	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,38:33:94:0.409:2	./.	0/1:40,25:32:65:0.385:2
chr14	51446216	rs2275462	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,49:32:50:0.980:2	0/1:1,23:33:24:0.958:2	./.	./.	0/1:0,23:32:23:1.00:2	0/1:28,20:32:48:0.417:2	0/1:19,11:33:30:0.367:2	0/1:19,18:33:37:0.486:2	0/1:1,48:34:49:0.980:2	0/1:19,13:33:32:0.406:2	0/1:25,18:33:43:0.419:2
chr14	51489582	rs61755582	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,64:31:118:0.542:2	./.	./.	./.	./.	./.	./.
chr14	51712092	rs4606635	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:48,42:33:90:0.467:2	0/1:32,42:33:74:0.568:2	./.	./.	0/1:1,85:32:86:0.988:2	0/1:35,40:32:75:0.533:2	0/1:42,31:32:73:0.425:2	./.	./.	./.	0/1:45,55:34:100:0.550:2
chr14	51716188	rs17853629	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:27,29:29:56:0.518:2	0/1:17,17:27:34:0.500:2	0/1:0,5:29:5:1.00:2	./.	0/1:1,43:27:44:0.977:2	0/1:30,32:28:62:0.516:2	0/1:29,18:28:47:0.383:2	0/1:0,60:27:60:1.00:2	0/1:48,32:27:80:0.400:2	0/1:0,71:29:71:1.00:2	0/1:1,62:27:63:0.984:2
chr14	51716467	rs7160810	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:52,43:32:95:0.453:2	0/1:58,55:31:113:0.487:2	0/1:1,17:31:18:0.944:2	./.	0/1:1,93:30:94:0.989:2	0/1:58,38:31:96:0.396:2	0/1:66,58:31:124:0.468:2	0/1:0,85:30:85:1.00:2	0/1:60,49:31:109:0.450:2	0/1:0,97:31:97:1.00:2	0/1:0,87:31:87:1.00:2
chr14	52164871	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:32:183:0.022:2	./.	./.	./.
chr14	52182081	rs731715	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,18:32:36:0.500:2	0/1:5,11:33:16:0.688:2	./.	0/1:0,28:32:28:1.00:2	0/1:0,46:33:46:1.00:2	0/1:12,18:32:30:0.600:2	0/1:31,16:32:47:0.340:2	0/1:0,39:31:39:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,38:33:38:1.00:2
chr14	52186966	rs2277495	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,24:32:53:0.453:2	0/1:37,51:31:88:0.580:2	./.	./.	./.	0/1:0,64:33:64:1.00:2	0/1:13,28:32:41:0.683:2	./.
chr14	52186972	rs2277494	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,15:29:34:0.441:2	0/1:11,20:29:31:0.645:2	0/1:7,4:30:11:0.364:2	0/1:29,24:29:53:0.453:2	0/1:55,36:29:91:0.396:2	0/1:32,11:31:43:0.256:2	./.	0/1:1,56:29:57:0.982:2	./.	0/1:28,13:28:41:0.317:2	0/1:18,28:29:46:0.609:2
chr14	52466502	rs76200085	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,49:31:116:0.422:2	./.	./.	./.	./.	./.	./.
chr14	52473372	rs147018937	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,66:32:166:0.400:2	./.	./.	./.	./.	./.
chr14	52478315	rs1051069	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:19,22:30:41:0.537:2	0/1:16,11:30:27:0.407:2	0/1:4,6:30:10:0.600:2	./.	0/1:1,85:30:86:0.988:2	./.	0/1:2,74:30:76:0.974:2	./.	./.	0/1:1,40:30:41:0.976:2	0/1:35,36:29:71:0.507:2
chr14	52481917	rs946615	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:20,20:32:40:0.500:2	0/1:10,12:33:22:0.545:2	0/1:1,4:31:5:0.800:2	./.	0/1:35,36:31:71:0.507:2	./.	0/1:37,35:31:72:0.486:2	./.	./.	./.	0/1:29,22:30:51:0.431:2
chr14	52496275	rs12887495	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,49:29:109:0.450:2	./.	./.	./.	./.	0/1:39,39:30:78:0.500:2	./.
chr14	52496387	rs2273430	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:31:87:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,8:28:8:1.00:2	0/1:0,105:31:105:1.00:2	0/1:0,95:30:95:1.00:2	0/1:0,90:31:90:1.00:2	0/1:1,106:31:107:0.991:2	0/1:0,115:31:115:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,110:30:110:1.00:2	0/1:0,124:30:124:1.00:2
chr14	52496407	rs2273431	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,81:32:83:0.976:2	0/1:0,32:31:32:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,89:32:89:1.00:2	0/1:39,36:32:75:0.480:2	0/1:0,79:32:79:1.00:2	0/1:2,81:32:83:0.976:2	0/1:1,101:32:102:0.990:2	0/1:0,91:33:91:1.00:2	0/1:55,36:32:91:0.396:2	0/1:0,113:31:114:1.00:2
chr14	52507429	rs3742536	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,93:33:184:0.505:2	0/1:54,34:33:88:0.386:2	0/1:11,18:33:29:0.621:2	0/1:91,99:33:190:0.521:2	0/1:96,67:31:164:0.411:2	0/1:1,189:32:190:0.995:2	0/1:0,178:32:178:1.00:2	0/1:96,94:32:190:0.495:2	0/1:95,89:32:184:0.484:2	0/1:0,149:33:149:1.00:2	./.
chr14	52507501	rs149491986	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,90:33:160:0.563:2	./.	./.	./.	./.	./.	./.	./.
chr14	52509063	rs17831525	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	52509501	rs3818186	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,43:32:111:0.387:2	./.	0/1:55,46:31:101:0.455:2	./.	./.	0/1:60,36:32:96:0.375:2	./.
chr14	52509601	rs111989036	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,91:31:185:0.492:2	./.	./.	./.	./.	./.	./.
chr14	52520368	rs2101919	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,121:31:122:0.992:2	0/1:0,85:31:85:1.00:2	0/1:0,23:29:23:1.00:2	0/1:57,66:31:123:0.537:2	0/1:84,36:31:120:0.300:2	0/1:0,95:30:95:1.00:2	0/1:54,39:31:93:0.419:2	0/1:0,113:31:113:1.00:2	0/1:0,114:32:114:1.00:2	0/1:69,47:32:116:0.405:2	0/1:3,99:32:102:0.971:2
chr14	52520746	rs35657569	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:32,31:31:63:0.492:2	0/1:18,20:32:38:0.526:2	./.	0/1:37,38:31:75:0.507:2	./.	./.	./.	0/1:35,37:32:72:0.514:2	0/1:43,32:32:75:0.427:2	./.	0/1:43,35:32:78:0.449:2
chr14	52520853	rs904059	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:30:88:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,69:29:69:1.00:2	0/1:0,70:28:70:1.00:2	0/1:0,89:29:89:1.00:2	0/1:0,83:30:83:1.00:2	0/1:0,88:29:88:1.00:2	0/1:0,108:31:108:1.00:2	0/1:0,87:30:87:1.00:2	0/1:0,98:30:98:1.00:2
chr14	52535648	rs3920038	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,40:30:40:1.00:2	0/1:0,15:32:15:1.00:2	0/1:89,52:31:141:0.369:2	0/1:61,64:31:125:0.512:2	0/1:0,109:31:109:1.00:2	0/1:2,80:32:82:0.976:2	0/1:6,126:31:132:0.955:2	0/1:2,75:33:77:0.974:2	0/1:35,27:32:62:0.435:2	0/1:0,75:31:75:1.00:2
chr14	52735108	rs34968651	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,34:31:68:0.500:2	./.	./.	0/1:15,15:29:30:0.500:2	0/1:24,22:30:46:0.478:2
chr14	52741646	rs17125273	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,20:32:40:0.500:2	0/1:8,22:32:30:0.733:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	52781341	rs1353410	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,42:32:84:0.500:2	./.	./.	0/1:54,51:31:105:0.486:2	./.	./.	0/1:46,26:31:72:0.361:2	./.
chr14	52781513	rs111965614	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,37:28:93:0.398:2	./.	./.	./.	./.
chr14	52781589	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:27:65:0.062:2
chr14	52781617	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:32:195:0.021:2	./.	./.	./.	./.	./.
chr14	52781672	rs140871944	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,34:29:92:0.370:2	./.	./.	./.	./.
chr14	52899128	rs146027288	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,13:32:26:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	52906081	rs2249922	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,27:31:27:1.00:2	0/1:0,12:31:12:1.00:2	./.	0/1:24,9:30:33:0.273:2	0/1:0,19:31:19:1.00:2	./.	0/1:11,3:31:14:0.214:2	0/1:32,17:31:49:0.347:2	./.	0/1:0,13:32:13:1.00:2	0/1:0,34:31:35:1.00:2
chr14	52907353	rs1952254	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,21:31:21:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,3:32:3:1.00:2	0/1:22,15:32:37:0.405:2	0/1:1,27:31:28:0.964:2	./.	./.	0/1:10,12:31:22:0.545:2	./.	0/1:0,28:32:28:1.00:2	0/1:0,57:32:57:1.00:2
chr14	52937255	rs7155490	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,35:31:64:0.547:2	./.	./.	./.	./.	0/1:2,54:32:56:0.964:2	./.
chr14	53098902	rs762063	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,7:32:20:0.350:2	0/1:86,88:31:175:0.506:2	./.	0/1:3,149:31:152:0.980:2	0/1:89,73:31:162:0.451:2	0/1:109,71:31:180:0.394:2	0/1:0,169:32:169:1.00:2	0/1:105,83:32:188:0.441:2	./.
chr14	53112906	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:34:103:0.039:2	./.	./.	./.	./.
chr14	53119866	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,45:33:108:0.417:2	./.	./.
chr14	53124807	rs3783453	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,14:30:36:0.389:2	./.	./.	./.	./.	./.	./.
chr14	53130507	rs17125636	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,7:33:21:0.333:2	0/1:71,69:32:140:0.493:2	./.	0/1:90,78:32:168:0.464:2	0/1:59,36:32:95:0.379:2	0/1:88,72:32:160:0.450:2	0/1:0,163:33:163:1.00:2	0/1:66,50:33:116:0.431:2	./.
chr14	53178156	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:32:78:0.051:2	./.	./.
chr14	53178184	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,6:32:64:0.094:2	./.	./.	./.	./.	0/1:96,4:34:100:0.040:2	./.	./.
chr14	53187677	rs148193630	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,66:30:154:0.429:2	./.
chr14	53194309	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:32:108:0.037:2	./.	./.	./.
chr14	53211622	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,6:32:138:0.043:2
chr14	53245172	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:32:99:0.040:2	./.	./.	./.	0/1:58,5:34:63:0.079:2	./.
chr14	53327146	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:33:153:0.026:2
chr14	53345378	rs2357947	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:32:63:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,54:31:54:1.00:2	0/1:1,38:31:39:0.974:2	0/1:45,26:32:71:0.366:2	0/1:0,59:32:59:1.00:2	0/1:0,47:32:47:1.00:2	0/1:27,20:33:47:0.426:2
chr14	53522506	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:35:84:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	53529669	rs4898778	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:15,3:33:18:0.167:2	./.	0/1:0,27:30:27:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,34:31:34:1.00:2	0/1:8,17:31:25:0.680:2	0/1:0,36:31:36:1.00:2	0/1:0,38:33:38:1.00:2	0/1:11,13:31:24:0.542:2	0/1:0,47:32:47:1.00:2
chr14	53619463	rs2358188	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:29:2:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,4:28:4:1.00:2	0/1:0,7:30:7:1.00:2	./.	0/1:0,10:30:10:1.00:2	0/1:0,3:31:3:1.00:2	./.	0/1:0,7:29:7:1.00:2
chr14	53619544	rs2358189	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,191:28:191:1.00:2	0/1:0,194:28:194:1.00:2	0/1:0,190:28:190:1.00:2	0/1:95,103:28:198:0.520:2	0/1:4,192:28:196:0.980:2	0/1:1,167:30:168:0.994:2	0/1:100,80:29:180:0.444:2	0/1:0,150:29:150:1.00:2
chr14	53619681	rs61985140	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,5:31:8:0.625:2	./.	./.	./.	./.	./.
chr14	54417522	rs17563	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:6,4:26:10:0.400:2	0/1:7,3:29:10:0.300:2	./.	0/1:6,6:31:12:0.500:2	./.	./.	./.	./.	./.	0/1:2,4:28:6:0.667:2	./.
chr14	54868301	rs201870949	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:142,4:31:146:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr14	54875514	rs2179896	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,17:31:43:0.395:2	0/1:17,14:32:31:0.452:2	0/1:0,7:31:7:1.00:2	0/1:1,60:32:61:0.984:2	0/1:26,19:32:45:0.422:2	0/1:0,54:31:54:1.00:2	0/1:15,20:31:35:0.571:2	./.	./.	0/1:0,30:32:30:1.00:2	0/1:0,86:32:86:1.00:2
chr14	54878204	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,4:30:27:0.148:2	./.	./.	./.
chr14	54946543	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,5:34:115:0.043:2	./.	./.
chr14	54946552	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,6:28:106:0.057:2	./.	./.
chr14	54946558	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,5:32:101:0.050:2	./.	./.
chr14	54955677	rs3737314	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,5:28:11:0.455:2	./.	./.	./.	./.
chr14	54996872	rs11555279	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,56:30:112:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr14	54997751	rs34839928	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,37:32:92:0.402:2	./.	./.	./.	0/1:60,29:33:89:0.326:2	./.
chr14	55034704	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,4:31:49:0.082:2	./.	./.	./.	./.	./.	./.
chr14	55168914	rs17127792	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,56:32:137:0.412:2
chr14	55218161	rs2295820	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:36,29:31:65:0.446:2	0/1:16,19:32:35:0.543:2	0/1:0,3:33:3:1.00:2	./.	./.	0/1:2,81:32:83:0.976:2	0/1:1,60:33:61:0.984:2	./.	0/1:1,90:33:91:0.989:2	0/1:33,25:32:58:0.431:2	0/1:37,49:32:86:0.570:2
chr14	55251251	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,62:30:141:0.440:2	0/1:59,45:31:104:0.433:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	55255673	rs11431	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,25:32:63:0.397:2	0/1:28,10:31:38:0.263:2	0/1:0,10:31:10:1.00:2	0/1:41,66:30:107:0.617:2	0/1:1,110:31:112:0.991:2	./.	0/1:38,44:31:82:0.537:2	0/1:54,53:31:107:0.495:2	./.	0/1:0,64:31:64:1.00:2	0/1:1,78:31:79:0.987:2
chr14	55448393	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:31:62:0.065:2	./.	./.	./.	./.	./.
chr14	55448409	rs61741224	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,15:30:35:0.429:2	./.	0/1:33,36:29:69:0.522:2	./.	./.
chr14	55457988	rs72715571	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,45:31:101:0.446:2	0/1:24,31:30:55:0.564:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	55509927	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:127,4:33:131:0.031:2	./.	./.	./.	./.	./.	./.
chr14	55510110	rs17128136	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,12:32:33:0.364:2	./.	./.
chr14	55511518	rs45485492	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:39,46:33:85:0.541:2	0/1:40,18:32:58:0.310:2	./.	./.	0/1:35,35:31:70:0.500:2	./.	./.	./.	./.	./.	./.
chr14	55512273	rs1952085	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:25,27:33:52:0.519:2	0/1:15,5:32:20:0.250:2	0/1:5,5:32:10:0.500:2	./.	./.	./.	0/1:13,10:29:23:0.435:2	./.	0/1:15,22:33:37:0.595:2	0/1:19,14:32:33:0.424:2	./.
chr14	55513848	rs11849878	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:26,23:32:49:0.469:2	0/1:14,21:32:35:0.600:2	0/1:6,6:32:12:0.500:2	./.	./.	./.	0/1:16,16:33:32:0.500:2	./.	0/1:22,20:33:42:0.476:2	0/1:17,18:32:35:0.514:2	./.
chr14	55515217	rs184286868	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,24:28:38:0.632:2	./.	./.	./.	./.	./.
chr14	55531345	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:31:140:0.029:2	./.
chr14	55531389	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,5:28:155:0.032:2	./.	./.
chr14	55604774	rs11538648	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,25:33:57:0.439:2	./.
chr14	55604935	rs4644	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:10,6:33:16:0.375:2	0/1:9,10:31:19:0.526:2	0/1:4,3:30:7:0.429:2	./.	./.	./.	0/1:14,11:31:25:0.440:2	./.	0/1:13,10:33:23:0.435:2	0/1:7,12:32:19:0.632:2	./.
chr14	55605036	rs4652	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:7,3:32:10:0.300:2	./.	0/1:1,3:30:4:0.750:2	./.	./.	0/1:13,11:32:24:0.458:2	0/1:6,8:31:14:0.571:2	0/1:5,10:31:15:0.667:2	0/1:10,3:30:13:0.231:2	0/1:1,4:31:5:0.800:2	./.
chr14	55611839	rs11125	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,33:33:84:0.393:2	./.
chr14	55619311	rs15870	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:19,12:33:32:0.387:2	0/1:15,9:32:24:0.375:2	0/1:3,3:32:6:0.500:2	./.	./.	./.	0/1:18,27:32:45:0.600:2	./.	0/1:40,18:33:58:0.310:2	0/1:21,20:32:41:0.488:2	./.
chr14	55621357	rs142873440	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,41:32:82:0.500:2	./.	./.	./.	./.
chr14	55636259	rs17128275	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,21:30:40:0.525:2	./.	0/1:25,21:31:46:0.457:2	./.	./.	./.
chr14	55643857	rs8010791	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,36:30:68:0.529:2	./.	0/1:32,25:29:57:0.439:2	./.	./.	./.
chr14	55643908	rs10144326	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,28:30:57:0.491:2	./.	0/1:30,19:31:49:0.388:2	./.	0/1:40,20:30:60:0.333:2	./.
chr14	55655692	rs2274271	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,56:32:101:0.554:2	./.	0/1:58,50:32:108:0.463:2	./.	0/1:61,32:33:93:0.344:2	./.
chr14	55817708	rs10144418	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:64,65:29:129:0.504:2	0/1:48,33:28:81:0.407:2	0/1:5,14:30:19:0.737:2	./.	./.	./.	0/1:78,78:30:156:0.500:2	./.	0/1:84,81:30:165:0.491:2	0/1:90,63:30:153:0.412:2	./.
chr14	55818403	rs35070799	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,50:32:106:0.472:2	./.
chr14	55818517	rs1045002	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:70,56:32:126:0.444:2	0/1:38,21:31:59:0.356:2	0/1:4,8:31:12:0.667:2	./.	./.	./.	0/1:64,28:31:92:0.304:2	./.	0/1:68,65:32:133:0.489:2	0/1:60,39:32:99:0.394:2	./.
chr14	55818706	rs3742569	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:65,63:30:128:0.492:2	0/1:44,28:29:72:0.389:2	0/1:5,12:30:17:0.706:2	./.	./.	./.	0/1:94,67:30:161:0.416:2	./.	0/1:91,71:31:162:0.438:2	0/1:60,70:29:130:0.538:2	./.
chr14	55818720	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,63:31:143:0.441:2	./.	./.	./.	./.	./.	./.	./.
chr14	55819791	rs1045004	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,33:28:68:0.485:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	55864130	rs8003279	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:37,35:32:72:0.486:2	0/1:10,22:32:32:0.688:2	0/1:3,4:32:7:0.571:2	./.	./.	./.	0/1:25,16:32:41:0.390:2	./.	0/1:52,36:33:88:0.409:2	./.	./.
chr14	55895617	rs149307233	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,19:32:46:0.413:2	./.	./.	./.
chr14	55903716	rs45612333	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,28:31:59:0.475:2	./.
chr14	55907172	rs8019270	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,38:30:39:0.974:2	0/1:0,15:30:15:1.00:2	./.	0/1:1,51:31:52:0.981:2	0/1:0,53:30:53:1.00:2	0/1:30,15:31:45:0.333:2	0/1:0,45:30:45:1.00:2	0/1:40,18:31:58:0.310:2	0/1:35,23:31:58:0.397:2	0/1:0,46:30:46:1.00:2	0/1:21,24:30:45:0.533:2
chr14	56079039	rs34879854	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,56:32:98:0.571:2	./.	./.	./.	./.	./.	./.	./.
chr14	56096731	rs2274075	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,51:32:117:0.436:2	./.	0/1:62,39:32:101:0.386:2	./.
chr14	56146357	rs11546	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,51:33:136:0.375:2	./.	0/1:50,41:33:91:0.451:2	./.
chr14	56763455	rs140013898	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,4:29:15:0.267:2	./.	./.	./.	./.	./.	./.
chr14	57052511	rs3737171	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,10:32:22:0.455:2	./.	./.	./.	0/1:108,86:32:194:0.443:2	./.	./.	0/1:0,169:33:169:1.00:2	0/1:106,80:33:186:0.430:2
chr14	57075920	rs17776256	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,63:31:137:0.460:2	./.	0/1:73,50:31:123:0.407:2	./.	0/1:58,48:30:106:0.453:2	0/1:52,49:31:101:0.485:2	./.	./.
chr14	57092112	rs113277637	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,19:32:50:0.380:2	./.	./.	./.	./.
chr14	57099859	rs1041316	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:11,9:31:20:0.450:2	./.	./.	0/1:10,3:32:13:0.231:2	./.	0/1:5,6:31:11:0.545:2	0/1:0,8:32:8:1.00:2	0/1:11,7:32:18:0.389:2	0/1:0,16:33:16:1.00:2	0/1:0,17:32:17:1.00:2	0/1:27,5:32:32:0.156:2
chr14	57101682	rs913742	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,85:33:85:1.00:2	0/1:0,54:33:54:1.00:2	./.	0/1:59,42:33:101:0.416:2	0/1:0,68:32:68:1.00:2	0/1:50,41:32:91:0.451:2	0/1:2,78:33:80:0.975:2	0/1:67,60:33:127:0.472:2	0/1:46,56:34:102:0.549:2	0/1:0,97:33:97:1.00:2	0/1:61,66:33:127:0.520:2
chr14	57268947	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:32:59:0.068:2	./.	./.	./.	./.	./.
chr14	57676330	rs1804820	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,80:31:180:0.444:2	./.	./.	./.	./.	./.
chr14	57713508	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:34:108:0.037:2	./.
chr14	57741550	rs1189899	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,37:32:69:0.536:2	./.	./.	./.	./.	./.
chr14	57755564	rs35759976	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,28:30:58:0.483:2	0/1:26,21:31:47:0.447:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	57755605	rs144172236	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,37:32:93:0.398:2
chr14	57858194	rs45583845	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:26:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	57866623	rs2152360	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,11:33:11:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,13:32:13:1.00:2	0/1:7,7:33:14:0.500:2	0/1:7,9:32:16:0.563:2	0/1:0,4:31:4:1.00:2	0/1:1,18:32:19:0.947:2	0/1:10,7:33:17:0.412:2	0/1:0,11:33:11:1.00:2	0/1:0,15:33:15:1.00:2
chr14	57938124	rs1152531	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,53:32:116:0.457:2	0/1:43,25:32:68:0.368:2	0/1:0,10:32:10:1.00:2	0/1:0,105:31:105:1.00:2	0/1:0,88:31:88:1.00:2	0/1:0,99:30:99:1.00:2	0/1:0,92:31:92:1.00:2	0/1:74,71:31:145:0.490:2	0/1:74,61:32:135:0.452:2	0/1:0,75:31:75:1.00:2	0/1:0,144:31:144:1.00:2
chr14	57938260	rs1152530	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:33:46:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,2:36:2:1.00:2	0/1:0,43:33:43:1.00:2	0/1:0,37:31:37:1.00:2	0/1:1,50:33:51:0.980:2	0/1:0,57:33:57:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,63:33:63:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,73:33:73:1.00:2
chr14	57947421	rs34960436	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,124:30:124:1.00:2	./.	./.	./.	./.	./.
chr14	58047956	rs371078276	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,44:31:122:0.361:2	./.	./.	./.	./.
chr14	58048001	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:30:131:0.031:2	./.	./.	./.	./.
chr14	58048142	rs61746391	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,13:33:49:0.265:2	./.	./.	./.
chr14	58471445	rs17094192	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,20:30:54:0.370:2	./.	./.	0/1:14,11:30:25:0.440:2	./.	./.	./.	./.
chr14	58563694	rs2273442	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:58,54:33:112:0.482:2	0/1:55,33:33:88:0.375:2	./.	0/1:73,56:33:129:0.434:2	0/1:0,110:31:110:1.00:2	0/1:67,62:32:129:0.481:2	0/1:69,38:32:107:0.355:2	0/1:61,55:32:116:0.474:2	0/1:78,50:33:128:0.391:2	0/1:2,102:32:104:0.981:2	./.
chr14	58598252	rs45483691	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,76:32:76:1.00:2	./.	./.	./.	./.	0/1:53,40:33:93:0.430:2	./.	./.
chr14	58598357	rs45465593	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,57:30:87:0.655:2	./.	./.	./.	./.	./.
chr14	58604850	rs11626667	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,38:32:67:0.567:2
chr14	58605043	rs61741199	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,58:30:129:0.450:2	./.	./.	./.	./.	./.	./.
chr14	58605790	rs3829765	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,157:31:157:1.00:2	0/1:0,56:32:57:1.00:2	./.	./.	0/1:43,57:30:100:0.570:2	0/1:4,129:30:133:0.970:2	0/1:64,46:31:110:0.418:2	0/1:58,76:31:134:0.567:2	0/1:65,62:31:127:0.488:2	0/1:0,92:31:92:1.00:2	./.
chr14	58766617	rs1957038	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,60:32:62:0.968:2	0/1:0,31:32:31:1.00:2	./.	0/1:59,42:32:102:0.416:2	0/1:0,68:32:68:1.00:2	0/1:38,47:31:85:0.553:2	0/1:3,93:33:96:0.969:2	0/1:52,65:32:117:0.556:2	0/1:51,45:33:96:0.469:2	0/1:0,68:32:68:1.00:2	0/1:0,72:32:72:1.00:2
chr14	58768333	rs45562837	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,30:33:79:0.380:2	./.	./.	./.	0/1:35,47:33:82:0.573:2
chr14	58795029	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,6:32:99:0.061:2	./.
chr14	58830978	rs2230098	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,19:30:32:0.594:2	./.	./.	./.	./.	./.
chr14	58831142	rs1051858	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:33:10:1.00:2	0/1:25,15:33:40:0.375:2	./.	0/1:17,29:33:46:0.630:2	0/1:11,19:32:30:0.633:2	0/1:30,24:33:54:0.444:2	0/1:18,24:35:42:0.571:2	./.	0/1:31,25:32:57:0.446:2
chr14	58838668	rs1051860	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,57:29:57:1.00:2	0/1:0,26:28:26:1.00:2	./.	0/1:44,26:30:70:0.371:2	0/1:4,80:29:84:0.952:2	0/1:56,44:29:100:0.440:2	0/1:53,31:29:84:0.369:2	0/1:51,48:29:99:0.485:2	0/1:51,32:30:83:0.386:2	0/1:0,58:29:58:1.00:2	0/1:55,36:29:92:0.396:2
chr14	58838701	rs1051861	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,41:31:41:1.00:2	0/1:1,24:31:25:0.960:2	./.	0/1:44,20:30:64:0.313:2	0/1:2,65:30:67:0.970:2	0/1:57,36:30:93:0.387:2	0/1:50,30:31:80:0.375:2	0/1:43,42:30:85:0.494:2	0/1:52,21:32:73:0.288:2	0/1:0,45:31:45:1.00:2	0/1:53,23:31:76:0.303:2
chr14	58915119	rs186378072	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,82:33:180:0.456:2	./.	./.	./.	./.	./.	./.
chr14	58917454	rs1748971	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:32:55:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,98:32:98:1.00:2
chr14	58924510	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:31:45:0.089:2	./.	./.	./.
chr14	58932581	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:32:43:0.093:2	./.
chr14	58937416	rs1748986	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,16:33:16:1.00:2	./.	0/1:0,40:33:40:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,30:33:30:1.00:2
chr14	58953746	rs1617510	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:31:58:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,47:33:47:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,55:31:55:1.00:2
chr14	58955530	rs190271845	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,30:33:64:0.469:2	./.
chr14	58955556	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:31:41:0.098:2	./.
chr14	58958891	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:31:112:0.036:2
chr14	58965557	rs61729923	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,37:33:85:0.435:2
chr14	58965594	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,38:31:85:0.447:2	./.	./.	./.	./.
chr14	59105188	rs2003021	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.	./.	0/1:0,13:30:13:1.00:2	./.	0/1:6,5:31:11:0.455:2	0/1:4,6:30:10:0.600:2	0/1:0,4:31:4:1.00:2	0/1:3,3:30:6:0.500:2	0/1:0,8:30:8:1.00:2
chr14	59112475	rs863091	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,30:30:63:0.476:2	./.	./.	./.	./.	./.	0/1:13,16:31:29:0.552:2	0/1:23,27:30:50:0.540:2
chr14	59112677	rs34015825	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,4:30:20:0.200:2	./.	./.	./.	./.
chr14	59112732	rs17832998	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:29:3:1.00:2	0/1:0,12:32:12:1.00:2	./.	./.	0/1:0,9:29:9:1.00:2	./.	0/1:6,15:30:21:0.714:2	0/1:5,7:31:12:0.583:2	0/1:6,5:32:11:0.455:2	./.	0/1:9,6:30:15:0.400:2
chr14	59113430	rs698025	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:29:11:0.455:2	./.	./.	./.	./.	./.	0/1:1,5:32:6:0.833:2	./.
chr14	59113537	rs61755641	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	0/1:24,17:28:41:0.415:2	./.	./.	./.	./.
chr14	59114399	rs116646724	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,36:30:73:0.493:2	./.	0/1:34,31:31:65:0.477:2	./.	./.	0/1:44,36:32:80:0.450:2	0/1:38,26:32:64:0.406:2	./.
chr14	59114447	rs17833004	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,23:32:47:0.489:2	./.	0/1:26,35:32:61:0.574:2	./.	./.	0/1:39,30:32:70:0.435:2	0/1:26,31:32:57:0.544:2	./.
chr14	59114770	rs11541	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,28:29:59:0.475:2	./.	./.	./.	./.	./.	0/1:33,34:29:67:0.507:2	0/1:46,45:28:91:0.495:2
chr14	59789727	rs8022614	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:43,48:33:91:0.527:2	0/1:31,30:32:61:0.492:2	0/1:0,15:32:15:1.00:2	./.	./.	0/1:59,41:32:100:0.410:2	./.	./.	0/1:55,58:33:113:0.513:2	./.	./.
chr14	59789892	rs17096074	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,31:32:71:0.437:2	0/1:32,16:32:48:0.333:2	0/1:28,36:31:64:0.563:2
chr14	59797235	rs941884	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:57,41:32:98:0.418:2	0/1:32,29:32:61:0.475:2	0/1:0,13:32:13:1.00:2	./.	0/1:62,41:32:103:0.398:2	0/1:74,55:32:129:0.426:2	./.	0/1:3,125:33:128:0.977:2	0/1:1,108:34:109:0.991:2	0/1:0,99:33:99:1.00:2	0/1:96,52:33:148:0.351:2
chr14	59797373	rs28927674	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,60:32:137:0.438:2	0/1:32,36:32:68:0.529:2	0/1:67,51:32:118:0.432:2
chr14	59939727	rs8660	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,32:32:66:0.485:2	0/1:30,26:32:56:0.464:2	./.	0/1:61,39:32:100:0.390:2	0/1:38,18:30:56:0.321:2	0/1:59,38:32:97:0.392:2	0/1:4,70:33:74:0.946:2	0/1:1,97:32:98:0.990:2	0/1:1,124:33:125:0.992:2	0/1:38,46:33:84:0.548:2	0/1:70,46:33:116:0.397:2
chr14	59939804	rs1046701	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,40:31:103:0.388:2	./.	0/1:56,33:32:89:0.371:2
chr14	59950980	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.
chr14	59951278	rs10140007	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:22,5:31:27:0.185:2	0/1:7,4:32:11:0.364:2	./.	0/1:16,5:32:21:0.238:2	./.	0/1:10,7:33:17:0.412:2	0/1:14,5:24:19:0.263:2	0/1:0,22:30:22:1.00:2	0/1:11,12:32:23:0.522:2	./.	./.
chr14	59961812	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	60063472	rs6573275	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:30:80:1.00:2	0/1:0,58:30:58:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,107:30:107:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,79:29:79:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,110:30:110:1.00:2	0/1:0,82:30:82:1.00:2	0/1:0,79:30:79:1.00:2	0/1:0,109:29:109:1.00:2
chr14	60574539	rs12465	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:32:94:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,7:32:7:1.00:2	0/1:1,108:32:109:0.991:2	0/1:40,24:32:64:0.375:2	0/1:0,95:32:95:1.00:2	0/1:34,40:32:74:0.541:2	0/1:2,111:32:113:0.982:2	0/1:0,117:33:117:1.00:2	0/1:0,83:33:83:1.00:2	0/1:0,128:33:128:1.00:2
chr14	60575240	rs160231	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:33:28:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,4:33:4:1.00:2	0/1:2,25:33:27:0.926:2	0/1:11,7:31:18:0.389:2	0/1:0,20:33:20:1.00:2	./.	0/1:0,27:32:27:1.00:2	0/1:0,22:34:22:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,22:33:22:1.00:2
chr14	60575512	rs219312	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:5,9:31:14:0.643:2	0/1:5,4:30:9:0.444:2	./.	0/1:6,10:31:16:0.625:2	./.	./.	0/1:5,3:28:8:0.375:2	./.	0/1:0,12:31:12:1.00:2	./.	0/1:0,15:31:15:1.00:2
chr14	60575869	rs160232	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:33:33:1.00:2	0/1:1,28:33:29:0.966:2	0/1:0,3:33:3:1.00:2	0/1:2,61:34:63:0.968:2	0/1:26,17:32:43:0.395:2	0/1:0,44:32:44:1.00:2	0/1:29,28:33:57:0.491:2	0/1:0,54:33:54:1.00:2	0/1:2,56:34:58:0.966:2	0/1:1,53:33:54:0.981:2	0/1:0,59:34:59:1.00:2
chr14	60576241	rs160233	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,6:33:6:1.00:2	0/1:0,5:33:5:1.00:2	./.	0/1:2,2:33:4:0.500:2	0/1:4,4:33:8:0.500:2	0/1:0,4:34:4:1.00:2	0/1:0,3:34:3:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,4:26:4:1.00:2	./.	0/1:0,8:32:8:1.00:2
chr14	60576308	rs160234	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,5:32:5:1.00:2	./.	0/1:1,2:32:3:0.667:2	./.	0/1:0,4:29:4:1.00:2	./.	./.	./.	./.	0/1:0,5:31:5:1.00:2
chr14	60576637	rs160235	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:31:81:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,92:30:92:1.00:2	0/1:40,42:30:82:0.512:2	0/1:0,85:29:85:1.00:2	0/1:36,46:30:82:0.561:2	0/1:1,90:31:91:0.989:2	0/1:0,110:31:110:1.00:2	0/1:0,73:31:73:1.00:2	0/1:0,84:31:84:1.00:2
chr14	60576951	rs160236	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:29:67:1.00:2	0/1:0,53:28:53:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,65:29:65:1.00:2	0/1:17,26:29:43:0.605:2	0/1:0,64:29:64:1.00:2	0/1:33,25:29:58:0.431:2	0/1:1,66:28:67:0.985:2	0/1:0,73:30:73:1.00:2	0/1:0,64:29:64:1.00:2	0/1:0,69:29:69:1.00:2
chr14	60581863	rs219314	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:33:86:1.00:2	0/1:2,45:32:47:0.957:2	0/1:0,16:33:16:1.00:2	0/1:1,93:33:94:0.989:2	0/1:38,18:31:56:0.321:2	0/1:0,90:32:90:1.00:2	0/1:36,28:33:64:0.438:2	0/1:1,98:33:99:0.990:2	0/1:0,89:33:89:1.00:2	0/1:0,75:33:75:1.00:2	0/1:0,123:33:123:1.00:2
chr14	60581935	rs150687	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:32:68:1.00:2	0/1:0,40:32:41:1.00:2	0/1:0,7:31:7:1.00:2	0/1:1,58:32:60:0.983:2	0/1:32,23:31:55:0.418:2	0/1:0,68:31:68:1.00:2	0/1:26,29:32:55:0.527:2	0/1:0,84:31:84:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,101:32:101:1.00:2
chr14	60582053	rs150688	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:33:34:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,2:32:2:1.00:2	0/1:3,38:32:41:0.927:2	0/1:17,10:32:27:0.370:2	0/1:0,52:31:52:1.00:2	0/1:19,16:32:35:0.457:2	0/1:0,43:32:43:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,74:32:74:1.00:2
chr14	60585131	rs308998	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,85:32:183:0.464:2	./.	0/1:99,95:32:194:0.490:2	./.	./.	./.	./.
chr14	60591829	rs308990	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:74,70:33:144:0.486:2	./.	0/1:65,60:33:125:0.480:2	./.	./.	./.	./.
chr14	60591887	rs167437	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:99,87:32:186:0.468:2	./.	0/1:94,65:33:159:0.409:2	./.	./.	./.	./.
chr14	60611675	rs381839	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,8:30:26:0.308:2	./.	0/1:18,13:29:31:0.419:2	./.	./.	./.	./.
chr14	60616134	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:33:143:0.028:2	./.	./.
chr14	60635439	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:32:80:0.050:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	60903757	rs1254319	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:65,40:32:105:0.381:2	0/1:39,22:32:61:0.361:2	./.	0/1:72,48:31:121:0.400:2	0/1:0,69:31:69:1.00:2	./.	./.	./.	0/1:79,49:32:128:0.383:2	0/1:55,51:31:106:0.481:2	./.
chr14	60923783	rs11625921	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:32:64:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,104:32:104:1.00:2
chr14	60932752	rs12586711	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,9:33:12:0.750:2	0/1:0,5:32:5:1.00:2	./.	./.	./.	./.	0/1:9,4:33:13:0.308:2	./.
chr14	60938319	rs35543839	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,40:30:111:0.360:2	./.	./.	./.
chr14	60951584	rs75255569	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,55:31:122:0.451:2	./.	./.
chr14	60976537	rs33912345	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,29:30:41:0.707:2	0/1:10,14:32:24:0.583:2	0/1:3,3:27:6:0.500:2	0/1:45,32:30:77:0.416:2	./.	0/1:3,59:30:62:0.952:2	0/1:2,72:31:74:0.973:2	0/1:26,30:31:56:0.536:2	0/1:24,23:32:47:0.489:2	0/1:27,28:31:55:0.509:2	0/1:0,49:31:49:1.00:2
chr14	61180508	rs142166461	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:34:95:0.042:2	./.	./.
chr14	61180657	rs3742636	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,30:32:56:0.536:2	0/1:22,18:32:40:0.450:2	0/1:0,9:33:9:1.00:2	0/1:1,68:32:69:0.986:2	0/1:0,60:32:60:1.00:2	0/1:44,41:33:85:0.482:2	0/1:0,48:32:48:1.00:2	0/1:56,42:32:98:0.429:2	0/1:62,40:33:102:0.392:2	0/1:24,26:32:50:0.520:2	0/1:47,36:33:83:0.434:2
chr14	61201634	rs4151150	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,83:33:171:0.485:2	./.	./.
chr14	61445967	rs7142228	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,116:32:116:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,120:31:120:1.00:2	0/1:0,115:32:115:1.00:2	0/1:0,128:32:128:1.00:2	0/1:0,118:32:118:1.00:2	0/1:0,138:32:138:1.00:2	0/1:0,138:33:138:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,134:32:134:1.00:2
chr14	61445991	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,4:32:152:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr14	61446463	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:31:54:0.074:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	61448049	rs17097938	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,19:32:54:0.352:2	0/1:18,16:32:34:0.471:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	61449233	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:31:165:0.024:2	./.	./.	./.
chr14	61449328	rs976272	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:85,80:31:165:0.485:2	0/1:45,47:31:92:0.511:2	0/1:0,21:30:21:1.00:2	0/1:0,146:30:146:1.00:2	0/1:1,121:31:122:0.992:2	0/1:0,158:30:158:1.00:2	0/1:0,149:31:149:1.00:2	0/1:0,129:31:129:1.00:2	0/1:0,158:32:158:1.00:2	0/1:0,137:31:137:1.00:2	0/1:0,141:31:141:1.00:2
chr14	61509924	rs2296921	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,22:33:62:0.355:2	0/1:21,11:33:32:0.344:2	0/1:0,7:33:7:1.00:2	0/1:0,62:33:62:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,77:33:77:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,40:35:40:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,78:33:78:1.00:2
chr14	61550315	rs8016782	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,42:30:71:0.592:2	./.	./.
chr14	61747475	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.
chr14	61747644	rs3196765	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,6:32:6:1.00:2	0/1:0,2:33:2:1.00:2	./.	0/1:0,4:31:4:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,4:33:4:1.00:2	0/1:4,3:33:7:0.429:2	./.	0/1:0,2:32:2:1.00:2
chr14	61748308	rs117955567	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:21,13:29:34:0.382:2	0/1:7,14:28:21:0.667:2	./.	./.	0/1:25,25:29:50:0.500:2	./.	./.	./.	./.	0/1:16,21:29:37:0.568:2	./.
chr14	61789058	rs139343528	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,6:25:151:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr14	61857969	rs2230499	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:15,3:31:18:0.167:2	0/1:8,3:34:11:0.273:2	./.	./.	./.	./.	0/1:13,4:33:17:0.235:2	0/1:36,6:31:42:0.143:2	./.	./.	0/1:25,7:31:32:0.219:2
chr14	61924239	rs2230500	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,46:31:90:0.511:2	./.	./.	./.	./.	./.
chr14	61924241	rs2230501	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,45:32:89:0.506:2	./.	./.	./.	./.	./.
chr14	61997226	rs1088680	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,73:32:76:0.961:2	0/1:1,47:32:48:0.979:2	0/1:3,7:32:10:0.700:2	0/1:68,59:32:127:0.465:2	0/1:0,120:31:120:1.00:2	0/1:64,50:32:114:0.439:2	0/1:72,69:32:141:0.489:2	0/1:61,75:32:136:0.551:2	0/1:0,117:33:117:1.00:2	0/1:49,45:32:94:0.479:2	0/1:0,101:32:101:1.00:2
chr14	62207557	rs11549465	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,38:31:117:0.325:2	./.	./.	0/1:80,64:31:144:0.444:2	./.	./.	./.
chr14	62207613	rs61755645	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,39:33:80:0.488:2	0/1:32,28:33:60:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	62249073	rs35009885	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,23:32:40:0.575:2	./.	./.	./.	./.	./.
chr14	62462766	rs8019076	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:32:96:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,11:33:11:1.00:2	0/1:1,107:33:108:0.991:2	0/1:70,36:32:106:0.340:2	0/1:0,99:32:99:1.00:2	0/1:0,120:33:120:1.00:2	0/1:0,136:33:136:1.00:2	0/1:0,101:34:101:1.00:2	0/1:0,79:33:79:1.00:2	0/1:83,66:33:150:0.443:2
chr14	62463129	rs17099370	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,17:31:17:1.00:2	0/1:1,76:33:77:0.987:2	./.	./.	0/1:54,29:31:83:0.349:2	0/1:45,39:32:84:0.464:2	./.	./.	./.
chr14	62463214	rs1889806	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,15:31:50:0.300:2	0/1:12,10:29:22:0.455:2	0/1:0,10:30:10:1.00:2	0/1:1,34:30:35:0.971:2	0/1:30,13:30:43:0.302:2	0/1:28,30:29:58:0.517:2	0/1:21,14:29:35:0.400:2	0/1:30,15:28:45:0.333:2	0/1:35,21:30:56:0.375:2	./.	./.
chr14	62567400	rs200131787	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,14:30:36:0.389:2	./.	./.	./.	./.	./.
chr14	63174616	rs7161127	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,78:33:78:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,70:31:70:1.00:2	0/1:1,78:32:79:0.987:2	0/1:1,73:32:74:0.986:2	0/1:0,91:33:91:1.00:2	0/1:0,82:33:82:1.00:2	0/1:1,51:32:52:0.981:2	0/1:0,112:33:112:1.00:2
chr14	63174960	rs4902176	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,105:31:107:0.981:2	0/1:0,50:31:50:1.00:2	./.	./.	0/1:68,57:30:125:0.456:2	0/1:68,63:30:131:0.481:2	./.	0/1:1,104:30:105:0.990:2	0/1:1,114:31:116:0.991:2	./.	./.
chr14	63246602	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:30:94:0.043:2	./.	./.	./.	./.	./.
chr14	64065884	rs142765501	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,3:37:129:0.023:2	./.	./.	./.
chr14	64447776	rs9944035	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:42,43:33:85:0.506:2	0/1:20,20:32:40:0.500:2	./.	0/1:38,56:32:94:0.596:2	./.	./.	./.	0/1:38,74:33:112:0.661:2	./.	./.	0/1:56,68:33:124:0.548:2
chr14	64449359	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:31:141:0.028:2	./.	./.	./.	./.	./.
chr14	64457670	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:34:49:0.082:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	64467313	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:29:88:0.045:2	./.	./.	./.
chr14	64491695	rs4902264	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,34:30:98:0.347:2	0/1:29,41:29:70:0.586:2	0/1:0,7:30:7:1.00:2	0/1:64,33:30:97:0.340:2	0/1:35,35:30:70:0.500:2	0/1:0,90:29:90:1.00:2	0/1:57,35:30:92:0.380:2	0/1:1,122:29:123:0.992:2	0/1:0,89:30:89:1.00:2	0/1:2,82:29:84:0.976:2	0/1:83,40:29:124:0.325:2
chr14	64494278	rs10151127	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,19:32:46:0.413:2	0/1:14,18:32:32:0.563:2	0/1:0,4:31:4:1.00:2	0/1:29,26:32:55:0.473:2	0/1:0,44:31:44:1.00:2	0/1:0,44:31:44:1.00:2	0/1:22,14:31:36:0.389:2	0/1:0,41:32:41:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,42:32:42:1.00:2	0/1:43,38:32:81:0.469:2
chr14	64496749	rs4027402	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,25:33:46:0.543:2	0/1:15,7:31:22:0.318:2	0/1:0,2:31:2:1.00:2	0/1:18,31:32:49:0.633:2	0/1:0,31:31:31:1.00:2	0/1:0,51:31:51:1.00:2	0/1:28,15:32:43:0.349:2	0/1:2,55:31:57:0.965:2	0/1:0,54:31:54:1.00:2	0/1:0,55:32:55:1.00:2	0/1:45,51:31:96:0.531:2
chr14	64497930	rs4027404	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,50:32:114:0.439:2	0/1:44,24:32:68:0.353:2	0/1:0,13:31:13:1.00:2	0/1:70,69:31:139:0.496:2	0/1:1,77:31:78:0.987:2	0/1:1,95:31:96:0.990:2	0/1:63,36:32:99:0.364:2	0/1:0,75:31:75:1.00:2	0/1:0,98:32:98:1.00:2	0/1:1,95:31:96:0.990:2	0/1:90,50:31:141:0.357:2
chr14	64498037	rs4027405	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:67,42:31:109:0.385:2	0/1:37,32:32:69:0.464:2	0/1:0,13:31:13:1.00:2	0/1:66,58:30:124:0.468:2	0/1:1,63:31:64:0.984:2	0/1:0,104:30:104:1.00:2	0/1:65,34:31:99:0.343:2	0/1:0,87:30:87:1.00:2	0/1:0,125:31:125:1.00:2	0/1:0,103:31:103:1.00:2	0/1:93,60:31:153:0.392:2
chr14	64519035	rs1890908	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,17:31:45:0.378:2	0/1:20,22:29:42:0.524:2	0/1:0,8:28:8:1.00:2	0/1:42,29:30:71:0.408:2	0/1:0,41:30:41:1.00:2	0/1:0,81:30:81:1.00:2	0/1:0,48:30:48:1.00:2	0/1:1,81:30:82:0.988:2	0/1:0,76:30:77:1.00:2	0/1:0,57:30:57:1.00:2	0/1:44,37:30:81:0.457:2
chr14	64519455	rs3829767	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,18:33:35:0.514:2	0/1:16,10:32:26:0.385:2	0/1:0,5:31:5:1.00:2	0/1:20,16:32:36:0.444:2	0/1:0,25:32:25:1.00:2	0/1:0,22:30:22:1.00:2	0/1:12,16:33:28:0.571:2	0/1:1,38:32:39:0.974:2	0/1:0,34:32:34:1.00:2	0/1:0,33:32:33:1.00:2	0/1:22,22:32:44:0.500:2
chr14	64520020	rs11847087	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,12:33:26:0.462:2	./.	./.	./.	./.
chr14	64522674	rs8010911	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,38:33:89:0.427:2	0/1:28,23:32:51:0.451:2	0/1:0,14:33:14:1.00:2	0/1:60,58:33:118:0.492:2	0/1:0,64:32:64:1.00:2	0/1:0,98:32:98:1.00:2	0/1:49,51:33:101:0.510:2	0/1:0,91:32:91:1.00:2	0/1:0,100:34:100:1.00:2	0/1:2,85:32:87:0.977:2	0/1:85,39:33:124:0.315:2
chr14	64522843	rs8010699	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,20:31:70:0.286:2	0/1:36,26:29:62:0.419:2	0/1:0,8:31:8:1.00:2	0/1:51,48:29:99:0.485:2	0/1:0,66:30:66:1.00:2	0/1:2,84:30:86:0.977:2	0/1:34,36:29:70:0.514:2	0/1:1,86:30:87:0.989:2	0/1:0,65:30:65:1.00:2	0/1:1,54:30:55:0.982:2	0/1:42,45:30:87:0.517:2
chr14	64532260	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:196,4:32:200:0.020:2	./.	./.
chr14	64537498	rs35203186	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,42:32:90:0.467:2
chr14	64548201	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,67:32:121:0.554:2	./.	./.	./.
chr14	64554517	rs17101637	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,35:32:76:0.461:2	./.	./.	./.	./.
chr14	64557734	rs10137972	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,10:33:20:0.500:2	./.	./.	./.	0/1:36,20:33:56:0.357:2
chr14	64560091	rs2792205	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:42,28:33:70:0.400:2	0/1:17,14:32:31:0.452:2	./.	0/1:37,34:32:71:0.479:2	./.	./.	./.	./.	./.	./.	0/1:52,31:33:83:0.373:2
chr14	64560092	rs2781377	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:42,27:33:69:0.391:2	0/1:17,14:33:31:0.452:2	./.	0/1:37,34:32:71:0.479:2	./.	./.	./.	./.	./.	./.	0/1:52,31:33:83:0.373:2
chr14	64565536	rs36007735	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,16:31:52:0.314:2	./.
chr14	64580106	rs76668149	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,13:30:29:0.448:2	./.	./.	./.	./.
chr14	64596823	rs75568433	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,67:31:125:0.536:2	./.	./.	./.	./.	./.	./.
chr14	64604592	rs17766354	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,38:33:73:0.521:2	./.	./.	./.	./.
chr14	64612845	rs11629287	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,43:31:111:0.387:2	0/1:0,50:31:50:1.00:2	0/1:51,41:31:92:0.446:2	0/1:55,24:31:79:0.304:2	./.	./.	0/1:47,37:31:84:0.440:2	./.
chr14	64612858	rs10151658	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,43:32:108:0.398:2	0/1:39,49:32:88:0.557:2	0/1:7,3:32:10:0.300:2	0/1:1,114:31:115:0.991:2	0/1:0,62:31:62:1.00:2	0/1:53,45:31:98:0.459:2	0/1:2,75:31:77:0.974:2	0/1:134,4:31:138:0.029:2	./.	0/1:58,43:31:101:0.426:2	0/1:103,84:32:187:0.449:2
chr14	64634067	rs17101704	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,34:32:70:0.486:2	./.	./.	./.	./.
chr14	64637147	rs7161192	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,10:29:16:0.625:2	0/1:46,80:31:126:0.635:2	0/1:1,166:30:167:0.994:2	0/1:82,77:30:159:0.484:2	0/1:85,55:30:140:0.393:2	./.	./.	0/1:60,47:31:107:0.439:2	./.
chr14	64656855	rs2256191	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,45:34:105:0.429:2	0/1:29,25:32:54:0.463:2	0/1:5,5:32:10:0.500:2	0/1:1,109:33:110:0.991:2	0/1:2,102:32:104:0.981:2	0/1:63,72:32:135:0.533:2	./.	0/1:54,47:32:101:0.465:2	0/1:68,56:34:125:0.452:2	./.	0/1:86,71:33:158:0.452:2
chr14	64682980	rs140940287	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:29:90:0.044:2	./.	./.	./.	./.	./.
chr14	64686125	rs35648226	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:31:5:1.00:2	0/1:38,39:32:77:0.506:2	0/1:1,51:32:52:0.981:2	0/1:34,36:31:70:0.514:2	./.	0/1:50,37:31:87:0.425:2	0/1:44,42:33:86:0.488:2	./.	./.
chr14	64701691	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:33:83:0.049:2	./.	./.
chr14	64701771	rs60101369	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,30:31:56:0.536:2
chr14	64727188	rs201349732	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,54:30:101:0.535:2	./.
chr14	64749583	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2	./.	./.
chr14	64867522	rs151019303	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,34:30:67:0.507:2	./.
chr14	64882380	rs1950902	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,60:33:61:1.00:2	./.	0/1:0,84:32:84:1.00:2	0/1:0,67:32:67:1.00:2	0/1:39,39:33:78:0.500:2	0/1:0,85:34:85:1.00:2	0/1:33,41:32:75:0.554:2	0/1:0,91:33:91:1.00:2
chr14	64884674	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:31:75:0.053:2	./.
chr14	64884707	rs201524044	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,12:12:73:0.169:2	0/1:92,14:12:106:0.132:2	./.	./.	./.	./.	0/1:45,10:14:55:0.182:2	0/1:44,11:14:56:0.200:2
chr14	64902311	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:33:144:0.028:2	./.
chr14	64908845	rs2236225	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,5:33:12:0.417:2	0/1:50,55:32:105:0.524:2	0/1:53,45:32:98:0.459:2	./.	0/1:0,97:33:97:1.00:2	0/1:59,68:32:127:0.535:2	0/1:49,54:33:103:0.524:2	./.	0/1:40,45:33:85:0.529:2
chr14	64935411	rs2230491	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	0/1:24,16:30:40:0.400:2	./.	./.	./.	0/1:20,19:32:39:0.487:2	./.
chr14	64935720	rs1256149	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:31:66:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,40:30:40:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,51:32:51:1.00:2
chr14	64936460	rs77199571	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,11:31:46:0.239:2	./.	./.	./.
chr14	64936652	rs3742609	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:101,78:29:179:0.436:2	./.	./.	./.	0/1:104,92:30:196:0.469:2	0/1:69,84:30:153:0.549:2	./.
chr14	64937033	rs3742608	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,14:30:21:0.667:2	./.	0/1:50,59:29:109:0.541:2	0/1:68,48:28:116:0.414:2	./.	./.	0/1:61,66:31:127:0.520:2	0/1:0,119:28:119:1.00:2	./.
chr14	64937146	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	./.	./.
chr14	64937180	rs1256150	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:1,5:33:6:0.833:2	0/1:0,5:31:5:1.00:2	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	0/1:8,8:30:16:0.500:2
chr14	64937328	rs2045023	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:32:10:0.300:2	0/1:1,9:35:10:0.900:2	./.
chr14	64937352	rs2045024	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,7:29:26:0.269:2	0/1:11,5:31:16:0.313:2	./.	./.	0/1:10,7:32:17:0.412:2	0/1:0,17:33:17:1.00:2	./.
chr14	64937704	rs61985663	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:31:7:0.714:2	./.	0/1:22,17:31:39:0.436:2	0/1:40,22:31:62:0.355:2	./.	./.	0/1:29,40:33:69:0.580:2	0/1:0,45:32:45:1.00:2	./.
chr14	64937867	rs199669358	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,8:15:37:0.216:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,13:14:53:0.245:2
chr14	64937872	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,13:12:33:0.394:2	./.	./.	./.	./.	./.	./.	./.	0/1:21,10:14:31:0.323:2	0/1:16,8:14:24:0.333:2	0/1:34,11:16:45:0.244:2
chr14	64939235	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:33:77:0.052:2
chr14	64988279	rs28626711	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:31:15:0.600:2	./.	./.	0/1:56,44:32:100:0.440:2	./.	./.	./.	0/1:48,39:32:87:0.448:2	./.
chr14	64988924	rs10133411	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,22:28:48:0.458:2	./.	./.	./.	0/1:18,21:29:39:0.538:2	./.
chr14	64990626	rs10891	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,32:29:52:0.615:2	./.	./.	./.	0/1:48,42:30:90:0.467:2	0/1:45,21:28:67:0.318:2	./.
chr14	65008138	rs45456191	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,29:31:69:0.420:2	./.	./.	./.	./.
chr14	65008251	rs1063391	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:27:4:1.00:2	0/1:30,39:27:69:0.565:2	0/1:27,28:27:55:0.509:2	0/1:43,30:26:73:0.411:2	0/1:30,22:28:52:0.423:2	0/1:44,27:25:71:0.380:2	0/1:25,19:28:44:0.432:2	0/1:13,24:29:37:0.649:2	0/1:23,13:28:36:0.361:2
chr14	65008428	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,4:32:18:0.222:2	./.	./.	./.	./.
chr14	65009220	rs11551976	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,38:30:81:0.475:2	./.	./.	./.	./.
chr14	65016702	rs7156953	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,11:32:21:0.524:2	0/1:0,17:30:17:1.00:2	0/1:13,15:33:28:0.536:2	0/1:0,19:32:19:1.00:2	0/1:22,12:31:34:0.353:2	0/1:0,12:33:12:1.00:2	0/1:0,12:33:12:1.00:2	0/1:14,15:32:29:0.517:2
chr14	65031534	rs6573560	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:31:3:0.667:2	0/1:38,25:31:63:0.397:2	0/1:36,15:31:51:0.294:2	./.	0/1:0,27:32:27:1.00:2	0/1:46,38:30:84:0.452:2	0/1:35,40:31:75:0.533:2	./.	0/1:38,41:32:79:0.519:2
chr14	65053999	rs45482504	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:58,61:32:119:0.513:2	0/1:34,53:33:87:0.609:2	./.	./.	./.	./.	./.	./.	./.	0/1:73,54:33:127:0.425:2	./.
chr14	65054858	rs723594	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,17:32:41:0.415:2	./.	./.	./.	0/1:34,47:32:81:0.580:2	0/1:24,23:32:48:0.489:2	./.
chr14	65054966	rs116953714	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,49:33:82:0.598:2	./.	./.
chr14	65197415	rs73273530	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,33:33:69:0.478:2	0/1:29,18:32:47:0.383:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	65197767	rs229624	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,37:31:89:0.416:2	./.	./.	./.	0/1:0,87:32:87:1.00:2	0/1:37,31:31:68:0.456:2	./.
chr14	65207819	rs17767238	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,40:32:87:0.460:2	./.	./.	./.	./.	./.
chr14	65208026	rs229650	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:26,28:30:54:0.519:2	0/1:17,10:30:27:0.370:2	./.	./.	0/1:63,48:30:111:0.432:2	./.	./.	./.	0/1:6,50:31:56:0.893:2	0/1:41,29:30:70:0.414:2	./.
chr14	65209867	rs229649	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,3:31:8:0.375:2	./.	./.	./.	0/1:7,13:33:20:0.650:2	0/1:0,16:32:16:1.00:2	./.
chr14	65234008	rs11622977	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,22:33:43:0.512:2	0/1:24,22:33:46:0.478:2	./.
chr14	65239316	rs17180252	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:31:8:0.500:2	0/1:4,6:31:10:0.600:2	./.
chr14	65241228	rs229592	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:85,81:28:166:0.488:2	./.	0/1:61,79:28:140:0.564:2	0/1:0,135:29:135:1.00:2	0/1:40,46:29:86:0.535:2	0/1:37,57:29:94:0.606:2	./.
chr14	65241867	rs4899145	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,22:32:56:0.393:2	0/1:23,17:31:40:0.425:2	./.
chr14	65241906	rs4902310	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,21:30:46:0.457:2	0/1:22,19:25:41:0.463:2	./.
chr14	65241933	rs4902311	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,13:30:31:0.419:2	0/1:19,14:30:33:0.424:2	./.
chr14	65242035	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:31:64:0.063:2	./.	./.	./.	./.
chr14	65242044	rs184528	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:30:7:0.571:2	./.	0/1:48,49:32:97:0.505:2	./.	0/1:46,32:30:78:0.410:2	0/1:1,88:32:89:0.989:2	./.	./.	./.
chr14	65245956	rs1741488	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:28:8:0.571:2	0/1:73,42:31:115:0.365:2	0/1:75,38:29:113:0.336:2	0/1:47,38:29:85:0.447:2	0/1:95,44:30:139:0.317:2	0/1:0,96:30:96:1.00:2	./.	./.	./.
chr14	65245962	rs1741487	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:33:7:0.571:2	0/1:69,39:33:108:0.361:2	0/1:76,37:31:113:0.327:2	0/1:45,34:32:79:0.430:2	0/1:88,40:33:128:0.313:2	0/1:0,85:32:85:1.00:2	./.	./.	./.
chr14	65246623	rs1626923	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,6:33:11:0.545:2	0/1:46,57:33:103:0.553:2	0/1:54,68:32:122:0.557:2	0/1:43,50:32:93:0.538:2	0/1:49,38:33:87:0.437:2	0/1:4,113:33:117:0.966:2	0/1:48,50:33:98:0.510:2	0/1:54,43:32:97:0.443:2	./.
chr14	65249066	rs17180350	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,58:33:118:0.492:2	0/1:57,43:33:100:0.430:2	./.
chr14	65249153	rs10132778	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,47:29:90:0.522:2	./.	./.	./.	./.
chr14	65252330	rs191583247	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,13:32:40:0.333:2	./.	./.	./.	./.
chr14	65253232	rs77806	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:32:15:0.533:2	./.	0/1:35,27:31:62:0.435:2	0/1:27,34:32:61:0.557:2	./.	0/1:2,82:31:84:0.976:2	0/1:41,26:32:67:0.388:2	0/1:20,25:32:45:0.556:2	./.
chr14	65260227	rs229591	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,49:32:110:0.445:2	0/1:48,53:33:101:0.525:2	0/1:46,51:33:97:0.526:2	0/1:1,120:32:121:0.992:2	0/1:50,48:34:98:0.490:2	0/1:40,33:33:73:0.452:2	0/1:31,27:33:58:0.466:2
chr14	65262096	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,21:30:39:0.538:2	./.	./.	./.	./.	./.
chr14	65263300	rs229587	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:32:8:0.500:2	./.	0/1:39,35:31:74:0.473:2	0/1:28,36:31:64:0.563:2	0/1:32,28:32:60:0.467:2	0/1:1,85:31:86:0.988:2	0/1:47,25:31:72:0.347:2	./.	0/1:31,24:32:55:0.436:2
chr14	65263347	rs229586	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,15:30:43:0.349:2	0/1:23,23:31:46:0.500:2	./.	0/1:43,18:32:61:0.295:2	./.	./.
chr14	65270391	rs11623956	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,57:32:130:0.438:2	./.	./.
chr14	65392722	rs72726300	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,10:33:21:0.476:2	0/1:7,14:32:21:0.667:2	./.	./.	0/1:12,4:32:16:0.250:2	0/1:3,13:32:16:0.813:2	./.	./.	./.	./.	./.
chr14	65417070	rs35179634	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:34:185:0.022:2	./.	./.	./.	./.
chr14	65418300	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,12:15:84:0.143:2	./.	0/1:96,13:14:109:0.119:2	./.	./.
chr14	65419293	rs45454295	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:34,20:33:54:0.370:2	0/1:20,8:32:28:0.286:2	0/1:8,7:32:15:0.467:2	./.	0/1:0,54:32:54:1.00:2	0/1:35,26:31:61:0.426:2	./.	0/1:0,60:33:60:1.00:2	./.	./.	./.
chr14	65494422	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:32:143:0.028:2	./.	./.
chr14	65499393	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:30:58:0.069:2	./.	./.	./.	./.	./.
chr14	65560474	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.	./.	./.	./.
chr14	66028446	rs2229677	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,28:33:59:0.475:2	0/1:18,19:32:37:0.514:2	0/1:0,7:32:7:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,52:32:52:1.00:2	0/1:33,25:33:58:0.431:2	0/1:29,29:33:58:0.500:2	0/1:49,37:33:86:0.430:2	0/1:0,52:34:52:1.00:2	0/1:0,53:32:53:1.00:2	0/1:33,32:32:65:0.492:2
chr14	66082793	rs2229678	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,21:33:72:0.292:2	./.	./.	./.
chr14	66136163	rs35949016	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:77,66:32:143:0.462:2	0/1:38,54:32:92:0.587:2	./.	./.	./.	./.	0/1:100,78:31:178:0.438:2	0/1:95,92:31:187:0.492:2	./.	./.	0/1:58,85:31:143:0.594:2
chr14	67147816	rs3759753	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,5:32:11:0.455:2	0/1:9,10:33:19:0.526:2	0/1:11,4:32:15:0.267:2	0/1:9,10:33:19:0.526:2	0/1:5,11:35:16:0.688:2	./.	0/1:8,6:32:14:0.429:2
chr14	67147887	rs117256383	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:30:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	67671293	rs17836680	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,70:30:172:0.407:2	0/1:95,89:31:184:0.484:2	./.	0/1:95,67:31:162:0.414:2	./.	./.	./.
chr14	67671485	rs55981040	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,34:31:116:0.296:2	./.	./.	./.	./.	./.	./.	./.
chr14	67671701	rs11158655	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,27:31:63:0.429:2	./.	0/1:51,27:28:78:0.346:2
chr14	67759416	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.
chr14	67769177	rs10146663	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,27:34:43:0.628:2	./.	0/1:34,21:31:55:0.382:2
chr14	67857372	rs367956243	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,4:29:83:0.048:2	./.	./.	./.	./.	./.	./.	./.
chr14	67878717	rs12888674	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:31:11:0.636:2	0/1:0,5:31:5:1.00:2	./.	./.	0/1:7,4:33:11:0.364:2	./.	./.	./.
chr14	67940263	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:32:118:0.034:2	./.	./.	./.	./.	./.
chr14	68024134	rs3825723	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,16:32:18:0.889:2	./.	./.	0/1:14,7:32:21:0.333:2	./.	0/1:9,6:33:15:0.400:2	./.	./.
chr14	68029313	rs2236235	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:12,18:32:30:0.600:2	0/1:6,9:32:15:0.600:2	./.	0/1:0,36:31:36:1.00:2	./.	./.	0/1:19,18:31:37:0.486:2	./.	0/1:16,19:32:35:0.543:2	./.	./.
chr14	68029386	rs1885043	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,8:30:24:0.333:2	./.
chr14	68035879	rs3825725	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,20:29:20:1.00:2	./.	0/1:31,10:28:41:0.244:2	./.	./.	0/1:21,14:29:35:0.400:2	0/1:22,9:27:31:0.290:2
chr14	68038904	rs201079154	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,22:31:40:0.550:2	./.	./.	./.	./.	./.	./.	./.
chr14	68041061	rs61534804	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,21:33:43:0.488:2	0/1:16,23:33:39:0.590:2	./.	0/1:25,36:32:61:0.590:2	0/1:20,23:32:43:0.535:2	0/1:20,23:30:43:0.535:2	./.	./.	0/1:36,29:33:65:0.446:2	./.	./.
chr14	68042574	rs11158685	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,59:28:61:0.967:2	0/1:0,42:29:42:1.00:2	./.	0/1:41,58:29:99:0.586:2	0/1:78,55:28:133:0.414:2	0/1:2,96:29:98:0.980:2	0/1:3,115:29:118:0.975:2	0/1:1,135:29:136:0.993:2	0/1:58,54:29:112:0.482:2	./.	./.
chr14	68045935	rs6573781	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:31:41:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,3:32:3:1.00:2	0/1:41,34:30:75:0.453:2	0/1:2,125:31:127:0.984:2	0/1:32,53:31:85:0.624:2	0/1:36,55:30:91:0.604:2	0/1:1,99:32:100:0.990:2	0/1:43,42:32:85:0.494:2	0/1:41,25:31:66:0.379:2	0/1:27,23:32:50:0.460:2
chr14	68048874	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,15:16:112:0.134:2	./.	0/1:98,14:14:112:0.125:2	0/1:113,14:15:127:0.110:2	0/1:100,16:14:116:0.138:2	./.	./.	0/1:90,13:17:103:0.126:2
chr14	68048877	.	T	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,10:16:95:0.106:2	0/1:74,15:12:89:0.169:2	0/1:82,24:8:106:0.226:2	0/1:97,24:10:121:0.198:2	0/1:92,20:14:112:0.179:2	0/1:107,17:11:125:0.137:2	./.	0/1:86,14:15:100:0.140:2
chr14	68053802	rs734028	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,36:32:83:0.434:2	0/1:23,25:31:48:0.521:2	0/1:1,14:31:15:0.933:2	0/1:0,86:32:86:1.00:2	0/1:1,53:30:54:0.981:2	0/1:0,79:31:79:1.00:2	0/1:29,42:31:71:0.592:2	0/1:48,38:32:86:0.442:2	0/1:0,95:33:95:1.00:2	0/1:1,77:32:78:0.987:2	0/1:0,96:32:96:1.00:2
chr14	68056837	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,4:33:47:0.085:2	./.	0/1:80,8:34:88:0.091:2	0/1:68,4:33:72:0.056:2	0/1:55,4:36:59:0.068:2	./.	./.
chr14	68060528	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:31:143:0.028:2
chr14	68060574	rs45474396	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,38:30:93:0.409:2	./.	./.	./.	./.	./.
chr14	68066818	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:32:42:0.095:2	./.	./.
chr14	68066849	rs28521930	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,4:34:24:0.167:2	./.	./.
chr14	68117587	rs141432809	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,33:31:62:0.532:2	0/1:20,18:31:38:0.474:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	68118132	rs15493	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,19:31:34:0.559:2	./.	./.	./.	./.	./.	./.	./.
chr14	68141104	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,4:35:16:0.250:2	./.	./.
chr14	68141164	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:31:35:0.114:2	./.	./.
chr14	68159269	rs80140987	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,68:31:151:0.450:2	./.	./.	./.	./.
chr14	68193731	rs17852293	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,19:32:41:0.463:2	0/1:15,15:32:30:0.500:2	./.	0/1:28,27:32:55:0.491:2	0/1:43,37:32:80:0.463:2	./.	./.	0/1:42,30:33:72:0.417:2	./.	./.	./.
chr14	68215240	rs147494935	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,56:31:130:0.431:2	./.	./.	./.	./.	./.
chr14	68219200	rs34373049	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,64:32:168:0.381:2	./.	./.	./.
chr14	68221818	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,6:32:133:0.045:2	./.
chr14	68234539	rs3742883	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,106:33:107:0.991:2	0/1:0,69:32:69:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,149:33:149:1.00:2	0/1:1,123:32:124:0.992:2	0/1:0,121:32:121:1.00:2	0/1:0,129:33:129:1.00:2	0/1:0,148:32:148:1.00:2	0/1:0,120:33:120:1.00:2	0/1:0,112:33:112:1.00:2	0/1:0,148:33:148:1.00:2
chr14	68236320	rs61746722	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,26:30:54:0.481:2
chr14	68249499	rs2235967	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,11:31:26:0.423:2	0/1:0,42:30:42:1.00:2	0/1:0,37:30:37:1.00:2	0/1:23,18:31:42:0.439:2	./.	0/1:2,30:31:32:0.938:2	./.	0/1:17,9:30:26:0.346:2
chr14	68257352	rs17192170	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:95,67:32:162:0.414:2	0/1:58,44:32:102:0.431:2	./.	./.	./.	./.	0/1:129,69:32:198:0.348:2	0/1:107,86:31:193:0.446:2	./.	./.	./.
chr14	68257387	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,90:32:187:0.481:2	./.	./.
chr14	68257485	rs7143196	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:30:7:0.429:2	./.	0/1:68,70:29:138:0.507:2	0/1:1,136:29:137:0.993:2	./.	./.	./.	./.	0/1:75,64:30:139:0.460:2
chr14	68264867	rs12891164	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:32:71:1.00:2	0/1:0,39:31:39:1.00:2	0/1:7,4:32:11:0.364:2	0/1:43,46:32:89:0.517:2	./.	./.	0/1:52,37:32:89:0.416:2	0/1:2,94:32:96:0.979:2	0/1:81,5:32:86:0.058:2	0/1:0,62:32:62:1.00:2	0/1:63,41:30:104:0.394:2
chr14	68265135	rs117228915	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,50:30:122:0.410:2
chr14	69259662	rs1051533	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,14:30:14:1.00:2	0/1:0,17:31:17:1.00:2	./.	0/1:19,31:32:50:0.620:2	0/1:40,27:30:67:0.403:2	0/1:39,28:32:67:0.418:2	./.	0/1:31,43:30:74:0.581:2	0/1:18,25:32:43:0.581:2	./.	0/1:14,24:30:38:0.632:2
chr14	69262749	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.
chr14	69263074	rs6573857	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,38:30:38:1.00:2	0/1:0,15:31:15:1.00:2	./.	0/1:0,55:30:55:1.00:2	0/1:0,52:29:52:1.00:2	0/1:25,19:28:44:0.432:2	0/1:33,23:31:56:0.411:2	0/1:2,36:29:38:0.947:2	0/1:0,43:31:43:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,34:30:34:1.00:2
chr14	69341658	rs77499007	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,9:32:12:0.750:2
chr14	69347632	rs36039812	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,66:31:146:0.452:2	./.	./.	./.
chr14	69352230	rs15993	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,49:32:130:0.377:2	./.	0/1:108,62:32:170:0.365:2	0/1:41,50:33:91:0.549:2	./.	./.
chr14	69378903	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:34:194:0.021:2	./.	./.	./.	./.
chr14	69521345	rs61741172	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:28:7:0.429:2	0/1:27,29:31:56:0.518:2	0/1:13,20:32:33:0.606:2	./.	0/1:22,27:31:50:0.551:2	0/1:28,28:30:56:0.500:2	./.	./.	./.
chr14	69703158	rs3211166	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,32:33:63:0.508:2	0/1:12,18:32:30:0.600:2	0/1:4,4:32:8:0.500:2	0/1:59,40:33:100:0.404:2	./.	0/1:1,81:32:82:0.988:2	0/1:33,30:33:63:0.476:2	./.	./.	./.	0/1:53,41:32:94:0.436:2
chr14	69704434	rs45557240	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,32:31:77:0.416:2
chr14	69704553	rs8007859	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:32:43:1.00:2	0/1:0,22:32:22:1.00:2	0/1:2,7:31:9:0.778:2	0/1:25,28:31:53:0.528:2	0/1:30,27:30:57:0.474:2	0/1:0,50:31:50:1.00:2	0/1:27,20:32:47:0.426:2	0/1:29,33:31:62:0.532:2	0/1:0,57:31:57:1.00:2	0/1:15,26:31:41:0.634:2	0/1:0,38:32:38:1.00:2
chr14	69727121	rs150774678	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,33:30:56:0.589:2	./.	./.	./.	./.	./.	./.
chr14	69795199	rs12879377	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,26:31:67:0.388:2	./.	./.	0/1:36,29:32:65:0.446:2	0/1:31,24:32:55:0.436:2	0/1:28,23:31:51:0.451:2
chr14	69799892	rs1275677	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,25:31:69:0.362:2	0/1:26,33:32:59:0.559:2	./.	./.	./.	0/1:2,71:32:74:0.973:2	0/1:30,20:32:50:0.400:2	./.	0/1:45,36:32:81:0.444:2	0/1:0,80:32:81:1.00:2	0/1:49,45:32:94:0.479:2
chr14	69864964	rs182240672	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,32:31:56:0.571:2	./.	./.
chr14	69966850	rs4902723	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,10:31:46:0.217:2	./.	./.	0/1:42,24:31:66:0.364:2	./.	./.
chr14	69994584	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:31:51:0.078:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	70171418	rs2275124	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,22:30:56:0.393:2
chr14	70237962	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:31:53:0.075:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	70238064	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,52:30:93:0.559:2	./.	./.	./.
chr14	70263648	rs4646285	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,68:32:136:0.500:2	./.	./.	0/1:0,115:33:115:1.00:2	./.	0/1:57,55:32:112:0.491:2
chr14	70418881	rs3742909	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,24:30:55:0.436:2	0/1:17,21:32:38:0.553:2	./.	./.	./.	0/1:48,45:31:94:0.484:2	0/1:57,36:31:93:0.387:2	0/1:68,54:31:122:0.443:2	0/1:0,63:32:63:1.00:2	./.	./.
chr14	70418999	rs10150925	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,57:31:106:0.538:2	./.	./.	./.	./.
chr14	70442509	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:32:96:0.042:2	./.	./.
chr14	70477508	rs3825739	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:16,18:32:34:0.529:2	0/1:11,11:32:22:0.500:2	./.	0/1:25,27:32:52:0.519:2	./.	0/1:24,20:32:44:0.455:2	0/1:24,24:32:48:0.500:2	./.	0/1:1,36:33:37:0.973:2	./.	./.
chr14	70478230	rs79580945	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,35:32:66:0.530:2	./.	./.	./.	./.
chr14	70489940	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:32:118:0.034:2	./.	./.	./.
chr14	70490028	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,59:30:121:0.488:2	./.	./.	./.	./.
chr14	70513016	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:33:112:0.036:2	./.	./.	./.	./.
chr14	70522484	rs1000521	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,33:33:65:0.508:2	0/1:13,24:33:37:0.649:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	70530637	rs140208080	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,78:32:156:0.500:2	./.	./.	./.	./.	./.
chr14	70633411	rs41286548	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,65:32:128:0.508:2	./.	./.	./.	./.	./.	./.	0/1:59,57:32:116:0.491:2
chr14	70633643	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,3:33:33:0.091:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	70634087	rs2114024	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,132:29:132:1.00:2	0/1:0,85:30:85:1.00:2	0/1:0,22:30:23:1.00:2	0/1:0,141:30:142:1.00:2	0/1:0,130:29:131:1.00:2	0/1:0,154:30:154:1.00:2	0/1:0,133:29:133:1.00:2	./.	0/1:0,157:29:157:1.00:2	0/1:0,90:29:90:1.00:2	0/1:0,138:29:138:1.00:2
chr14	70634546	rs7161524	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,107:31:112:0.955:2	./.	0/1:48,25:31:73:0.342:2	./.
chr14	70634801	rs17765575	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,62:28:146:0.425:2	0/1:97,85:30:182:0.467:2	./.	./.	./.	./.	0/1:96,68:30:165:0.415:2
chr14	70839735	rs45565842	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,15:30:29:0.517:2	./.
chr14	70839748	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,31:33:71:0.437:2	./.	./.
chr14	70924237	rs3751520	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:31:6:1.00:2	0/1:123,28:30:151:0.185:2	0/1:1,18:30:19:0.947:2	0/1:110,16:31:126:0.127:2	0/1:155,11:32:166:0.066:2	./.	./.	./.	0/1:136,28:30:164:0.171:2
chr14	70924249	rs3751521	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:111,70:32:181:0.387:2	0/1:54,43:32:97:0.443:2	0/1:0,5:32:5:1.00:2	0/1:131,25:32:156:0.160:2	0/1:1,22:32:23:0.957:2	0/1:2,125:32:127:0.984:2	0/1:157,16:33:173:0.092:2	0/1:105,80:32:185:0.432:2	0/1:90,84:33:174:0.483:2	./.	0/1:143,34:32:177:0.192:2
chr14	70924294	rs112060847	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:33:157:0.025:2	./.
chr14	70924335	rs199920662	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:115,8:33:123:0.065:2	./.	./.	0/1:97,7:33:104:0.067:2	0/1:63,4:32:67:0.060:2	0/1:90,8:32:98:0.082:2	0/1:73,4:31:77:0.052:2	0/1:125,6:32:131:0.046:2	0/1:97,9:33:106:0.085:2	./.	0/1:142,4:32:146:0.027:2
chr14	70924450	rs58247196	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:60,23:31:83:0.277:2	0/1:38,14:31:52:0.269:2	./.	0/1:77,16:30:93:0.172:2	0/1:65,16:29:81:0.198:2	0/1:72,40:29:112:0.357:2	0/1:56,19:30:75:0.253:2	0/1:31,64:30:95:0.674:2	0/1:72,34:30:106:0.321:2	0/1:31,19:29:50:0.380:2	0/1:68,9:31:78:0.117:2
chr14	70924462	rs3751523	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,43:33:68:0.632:2	0/1:18,35:32:53:0.660:2	0/1:0,10:30:10:1.00:2	0/1:0,75:33:75:1.00:2	0/1:3,67:32:70:0.957:2	0/1:32,69:33:101:0.683:2	0/1:0,56:32:56:1.00:2	0/1:28,62:32:90:0.689:2	0/1:39,61:34:100:0.610:2	0/1:2,36:32:38:0.947:2	0/1:0,55:32:55:1.00:2
chr14	70924501	rs8010994	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,60:33:74:0.811:2	0/1:10,44:32:54:0.815:2	0/1:1,15:33:16:0.938:2	0/1:0,89:33:89:1.00:2	0/1:0,153:32:153:1.00:2	0/1:32,58:33:90:0.644:2	0/1:1,136:33:137:0.993:2	0/1:30,50:32:80:0.625:2	0/1:17,88:34:105:0.838:2	0/1:22,34:32:56:0.607:2	0/1:0,61:33:61:1.00:2
chr14	70924507	rs3751524	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:46,36:32:82:0.439:2	0/1:28,24:31:53:0.462:2	./.	0/1:62,46:32:108:0.426:2	./.	./.	0/1:124,38:31:163:0.235:2	./.	0/1:67,42:32:110:0.385:2	./.	0/1:28,40:32:68:0.588:2
chr14	70924558	rs61979126	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,17:32:106:0.160:2	./.
chr14	70924566	rs3829452	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:80,15:32:95:0.158:2	0/1:47,12:31:59:0.203:2	./.	0/1:140,21:32:161:0.130:2	./.	0/1:62,27:32:89:0.303:2	./.	0/1:82,14:31:96:0.146:2	0/1:112,23:31:135:0.170:2	0/1:90,19:32:110:0.174:2	0/1:105,25:30:130:0.192:2
chr14	70924567	rs3829453	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:81,15:29:96:0.156:2	0/1:46,12:31:58:0.207:2	./.	0/1:138,21:29:159:0.132:2	./.	0/1:62,27:30:89:0.303:2	./.	0/1:82,15:30:97:0.155:2	0/1:112,23:30:135:0.170:2	0/1:91,19:30:110:0.173:2	0/1:105,25:28:130:0.192:2
chr14	70924602	rs72735759	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:65,9:32:74:0.122:2	0/1:44,5:31:49:0.102:2	./.	0/1:84,25:31:109:0.229:2	0/1:58,14:30:72:0.194:2	./.	0/1:66,23:32:89:0.258:2	0/1:17,59:32:76:0.776:2	0/1:83,15:33:98:0.153:2	0/1:19,58:31:77:0.753:2	0/1:96,16:33:112:0.143:2
chr14	70924613	rs138262361	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:54,6:33:60:0.100:2	0/1:39,3:33:42:0.071:2	./.	0/1:64,7:32:71:0.099:2	0/1:45,8:32:53:0.151:2	./.	0/1:53,7:31:61:0.117:2	./.	0/1:61,3:34:64:0.047:2	./.	0/1:88,4:33:92:0.043:2
chr14	70924693	rs45480894	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,4:33:20:0.200:2	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:32:29:0.138:2	./.	./.
chr14	70924696	rs77892318	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:15,4:32:19:0.211:2	./.	./.	./.	./.	./.	./.	0/1:27,3:31:30:0.100:2	0/1:25,4:32:29:0.138:2	./.	./.
chr14	70924697	rs45545935	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,4:32:20:0.200:2	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:32:29:0.138:2	./.	./.
chr14	70924812	rs370238293	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,5:30:122:0.041:2	./.	./.	./.	./.	./.
chr14	70924852	rs3829455	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:29:7:1.00:2	0/1:102,41:29:143:0.287:2	0/1:3,77:28:80:0.963:2	0/1:116,23:27:139:0.165:2	0/1:143,36:28:179:0.201:2	0/1:125,36:29:161:0.224:2	./.	0/1:0,78:29:78:1.00:2	0/1:114,61:29:176:0.349:2
chr14	70924955	rs114864695	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,23:32:66:0.348:2	0/1:19,12:33:31:0.387:2	./.	./.	./.	0/1:27,22:33:49:0.449:2	./.	0/1:15,28:31:43:0.651:2	0/1:37,24:33:61:0.393:2	./.	./.
chr14	70925257	rs12436346	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:31:56:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,3:29:3:1.00:2	0/1:0,57:32:57:1.00:2	0/1:1,36:32:37:0.973:2	0/1:0,55:31:55:1.00:2	0/1:2,33:31:35:0.943:2	0/1:0,55:31:55:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,69:31:70:1.00:2
chr14	70925501	rs72735760	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,46:32:113:0.411:2	./.	0/1:37,31:33:68:0.456:2	./.
chr14	70925659	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,4:32:58:0.069:2	./.	./.	0/1:79,5:31:85:0.060:2	./.	./.	0/1:113,6:31:119:0.050:2	0/1:118,8:32:126:0.063:2	./.	./.
chr14	70925661	rs149236193	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,4:33:58:0.069:2	./.	./.	0/1:86,5:31:91:0.055:2	./.	./.	0/1:116,6:32:122:0.049:2	0/1:123,6:33:129:0.047:2	./.	./.
chr14	70925665	rs10148733	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,55:32:104:0.529:2	./.	./.	./.	./.	./.	./.	0/1:53,52:32:105:0.495:2
chr14	70925818	rs2022624	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:52,29:32:81:0.358:2	0/1:24,6:33:30:0.200:2	./.	0/1:48,21:32:69:0.304:2	0/1:30,7:33:37:0.189:2	0/1:0,17:32:17:1.00:2	0/1:32,12:31:44:0.273:2	0/1:0,13:31:13:1.00:2	0/1:42,16:31:58:0.276:2	0/1:0,12:31:12:1.00:2	0/1:65,12:33:77:0.156:2
chr14	70925863	rs45466397	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,18:32:101:0.178:2	./.	0/1:63,25:32:88:0.284:2	./.
chr14	70989964	rs45554935	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,48:32:107:0.449:2	./.
chr14	70990495	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,42:32:98:0.429:2	./.
chr14	70991171	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:113,4:33:117:0.034:2	./.	./.	./.	./.	./.	./.
chr14	70991650	rs74062730	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,28:31:66:0.424:2	0/1:19,8:32:27:0.296:2	./.	./.	./.	0/1:36,23:32:59:0.390:2	./.	0/1:40,44:31:84:0.524:2	./.	./.	./.
chr14	71109153	rs4902834	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:31:8:1.00:2	0/1:0,7:32:7:1.00:2	./.	./.	./.	0/1:0,3:28:3:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,3:28:3:1.00:2	0/1:0,3:33:3:1.00:2	./.
chr14	71199452	rs3829955	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,14:30:28:0.500:2	./.	./.	0/1:86,87:30:173:0.503:2	./.	0/1:185,5:31:190:0.026:2	./.	./.	0/1:77,73:30:150:0.487:2
chr14	71204973	rs7153601	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,51:32:113:0.455:2	./.	./.	./.	./.	0/1:52,70:32:123:0.574:2
chr14	71374702	rs2526882	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:39,44:28:85:0.530:2	0/1:28,26:29:55:0.481:2	0/1:0,17:29:17:1.00:2	./.	0/1:71,88:28:160:0.553:2	./.	0/1:101,59:28:165:0.369:2	0/1:65,70:28:136:0.519:2	0/1:91,59:29:151:0.393:2	./.	0/1:49,52:28:102:0.515:2
chr14	71443674	rs143154004	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,43:32:98:0.439:2	./.	./.	./.
chr14	71443816	rs35702999	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,8:29:16:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	71444466	rs144799758	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:32:8:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	71444788	rs3814871	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:33,44:32:77:0.571:2	0/1:25,31:31:56:0.554:2	./.	./.	0/1:37,37:31:74:0.500:2	0/1:3,65:31:68:0.956:2	0/1:43,42:32:85:0.494:2	0/1:54,60:32:114:0.526:2	0/1:50,50:33:100:0.500:2	./.	0/1:42,42:33:84:0.500:2
chr14	71500217	rs71425297	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,38:32:93:0.409:2	0/1:45,39:32:84:0.464:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	71500681	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:35:63:0.063:2
chr14	72055378	rs34631533	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,28:31:66:0.424:2
chr14	72055468	rs1859643	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:33:40:1.00:2	0/1:1,24:32:25:0.960:2	0/1:2,6:33:8:0.750:2	0/1:0,39:33:39:1.00:2	0/1:19,20:33:39:0.513:2	0/1:37,12:33:49:0.245:2	0/1:0,30:32:30:1.00:2	0/1:25,17:33:42:0.405:2	0/1:0,46:33:46:1.00:2	0/1:27,20:32:47:0.426:2	0/1:0,73:33:73:1.00:2
chr14	72117156	rs8017465	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,150:32:150:1.00:2	0/1:1,110:32:111:0.991:2	0/1:0,18:31:18:1.00:2	0/1:1,139:33:140:0.993:2	0/1:63,59:32:122:0.484:2	0/1:68,70:32:138:0.507:2	0/1:0,128:32:128:1.00:2	0/1:60,81:32:141:0.574:2	0/1:0,150:33:150:1.00:2	0/1:0,152:32:153:1.00:2	0/1:0,154:32:155:1.00:2
chr14	72169130	rs79937396	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,10:32:15:0.667:2	./.	./.	./.	./.	./.	./.	0/1:84,58:33:142:0.408:2	./.
chr14	72945012	rs2302143	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:33:8:0.625:2	./.	./.	./.	./.	./.	0/1:42,61:34:103:0.592:2	./.	./.
chr14	73029178	rs2074647	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,7:28:7:1.00:2	./.
chr14	73220020	rs3742836	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,17:33:37:0.459:2	0/1:11,13:30:24:0.542:2	./.	./.	0/1:18,19:32:37:0.514:2	0/1:0,32:33:32:1.00:2	./.	./.
chr14	73404752	rs2302588	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,15:33:29:0.517:2	./.	0/1:10,8:33:18:0.444:2	./.	./.	./.
chr14	73412635	rs17856582	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,38:33:77:0.494:2	./.	./.
chr14	73422259	rs3815460	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,80:31:166:0.485:2	./.	0/1:103,81:30:184:0.440:2	./.	./.	./.
chr14	73422350	rs2806034	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,12:30:23:0.522:2	0/1:79,95:30:174:0.546:2	./.	./.	./.	0/1:92,100:30:192:0.521:2	./.	./.	0/1:106,66:30:172:0.384:2
chr14	73425462	rs12882409	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,4:32:8:0.500:2	0/1:1,2:33:3:0.667:2	./.	./.	0/1:0,9:31:9:1.00:2	0/1:7,9:30:16:0.563:2	0/1:5,4:32:9:0.444:2	./.	./.	0/1:5,5:28:10:0.500:2	./.
chr14	73437652	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:33:95:0.042:2	./.	./.	./.	./.
chr14	73440864	rs12931	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,41:31:42:0.976:2	0/1:0,33:31:34:1.00:2	./.	0/1:60,36:31:96:0.375:2	0/1:2,93:31:95:0.979:2	0/1:2,76:30:78:0.974:2	0/1:73,59:31:132:0.447:2	0/1:104,41:31:145:0.283:2	0/1:0,95:31:95:1.00:2	0/1:40,31:31:71:0.437:2	0/1:30,31:30:61:0.508:2
chr14	73448583	rs2286838	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,32:31:63:0.508:2	./.	0/1:41,32:31:73:0.438:2	./.	./.	./.
chr14	73459917	rs2333016	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,15:31:36:0.417:2	0/1:7,10:31:17:0.588:2	./.	./.	0/1:0,25:30:25:1.00:2	0/1:0,32:31:33:1.00:2	0/1:25,12:31:37:0.324:2	0/1:38,21:30:59:0.356:2	0/1:13,25:31:38:0.658:2	0/1:17,9:30:26:0.346:2	./.
chr14	73465003	rs997667	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,5:34:13:0.385:2	0/1:5,3:31:8:0.375:2	./.	./.	0/1:0,10:31:10:1.00:2	0/1:0,10:31:10:1.00:2	0/1:2,3:34:5:0.600:2	0/1:6,3:26:9:0.333:2	./.	0/1:4,6:33:10:0.600:2	./.
chr14	73538409	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:28:78:0.051:2	./.	./.	./.	./.	./.
chr14	73581011	rs362414	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,3:29:12:0.250:2	./.	0/1:7,7:26:14:0.500:2	./.	./.	./.
chr14	73711374	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,5:27:76:0.066:2	./.	./.	./.	./.	./.
chr14	73711394	rs2280792	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,16:32:40:0.400:2	./.
chr14	73716774	rs177393	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:41,28:31:70:0.406:2	0/1:33,19:31:52:0.365:2	./.	0/1:56,42:30:99:0.429:2	0/1:81,58:29:140:0.417:2	0/1:63,50:30:115:0.442:2	0/1:66,69:29:135:0.511:2	./.	0/1:60,27:29:87:0.310:2	0/1:32,37:29:69:0.536:2	0/1:40,43:29:85:0.518:2
chr14	73717720	rs741842	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,13:31:19:0.684:2	./.	./.
chr14	73718514	rs146906766	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,11:31:20:0.550:2	./.	./.	./.	./.	0/1:5,7:34:12:0.583:2	./.	./.
chr14	73727509	rs177389	T	G,C	.	PASS	AC=7,1;AF=0.292,0.042;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0/1:32:39:0.538:2	0/1:30:24:0.542:2	./.	0/2:27:41:0.488:2	0/1:31:41:0.488:2	0/1:32:40:0.350:2	0/1:30:39:0.487:2	./.	./.	0/1:31:30:1.00:2	0/1:31:33:0.606:2
chr14	73729498	rs177386	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,18:32:40:0.450:2	./.
chr14	73735366	rs4903104	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,15:32:31:0.484:2	0/1:14,9:30:23:0.391:2	./.	0/1:23,23:31:46:0.500:2	0/1:49,40:31:89:0.449:2	0/1:39,33:31:72:0.458:2	0/1:55,49:32:104:0.471:2	./.	0/1:45,19:33:64:0.297:2	./.	./.
chr14	73739239	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,4:32:31:0.129:2	./.	./.	./.	./.	./.
chr14	73743458	rs17781919	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,76:33:144:0.528:2	./.	./.
chr14	73957772	rs10144469	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,4:31:9:0.444:2	./.	0/1:0,3:26:3:1.00:2	./.
chr14	73958375	rs758109	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,43:32:43:1.00:2	0/1:0,20:32:20:1.00:2	./.	0/1:37,38:32:75:0.507:2	0/1:39,48:31:87:0.552:2	0/1:30,36:30:66:0.545:2	0/1:37,33:32:70:0.471:2	0/1:43,32:32:75:0.427:2	0/1:40,28:33:68:0.412:2	0/1:0,46:32:46:1.00:2	0/1:19,21:33:40:0.525:2
chr14	73958812	rs3813563	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,27:31:51:0.529:2	0/1:7,15:31:22:0.682:2	./.	0/1:31,38:33:69:0.551:2	0/1:40,26:32:66:0.394:2	0/1:42,30:32:72:0.417:2	0/1:42,22:32:64:0.344:2	0/1:40,27:31:67:0.403:2	0/1:28,35:32:63:0.556:2	./.	0/1:31,25:31:56:0.446:2
chr14	73963383	rs8014577	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,18:32:50:0.360:2	0/1:16,24:32:40:0.600:2	./.	0/1:19,29:32:48:0.604:2	0/1:22,18:31:40:0.450:2	0/1:31,49:32:80:0.613:2	0/1:30,19:32:49:0.388:2	0/1:34,18:32:52:0.346:2	0/1:41,32:32:73:0.438:2	0/1:0,47:32:47:1.00:2	0/1:43,43:31:86:0.500:2
chr14	73969610	rs11626122	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,27:32:59:0.458:2	./.	./.	./.
chr14	73989145	rs78901745	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,28:31:60:0.467:2	./.
chr14	73989458	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,4:31:48:0.083:2	./.	./.	./.	./.	./.	./.
chr14	74004152	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:26:5:1.00:2	./.	./.	./.
chr14	74008309	rs17113939	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,12:31:130:0.092:2	0/1:74,10:31:84:0.119:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	74010331	rs61987131	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:53,80:30:133:0.602:2	0/1:47,47:30:94:0.500:2	./.	./.	0/1:180,18:30:198:0.091:2	./.	./.	0/1:109,40:30:149:0.268:2	./.	./.	0/1:153,32:31:185:0.173:2
chr14	74036370	rs60568739	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,17:32:45:0.378:2	./.	./.	./.	./.
chr14	74040111	rs118157277	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:113,74:33:188:0.396:2	0/1:91,45:32:136:0.331:2	./.	./.	./.	./.	./.	./.	0/1:191,5:30:196:0.026:2	./.	./.
chr14	74040204	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:154,7:30:161:0.043:2	./.	./.	./.	./.	./.	./.
chr14	74041748	rs149033118	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:3,37:32:40:0.925:2	0/1:0,25:31:25:1.00:2	./.	./.	0/1:188,10:30:198:0.051:2	./.	0/1:2,9:32:12:0.818:2	0/1:1,25:32:26:0.962:2	./.	0/1:0,16:32:16:1.00:2	0/1:179,16:32:195:0.082:2
chr14	74042187	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:34:151:0.026:2	./.	./.	./.	./.
chr14	74042189	rs7494	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:75,105:30:180:0.583:2	0/1:34,68:29:102:0.667:2	./.	./.	0/1:161,27:29:188:0.144:2	./.	./.	0/1:83,57:30:141:0.407:2	./.	./.	0/1:151,42:29:193:0.218:2
chr14	74060508	rs35724886	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,5:27:37:0.135:2	0/1:33,4:31:37:0.108:2	./.	0/1:31,3:34:34:0.088:2	./.
chr14	74061866	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:31:137:0.029:2	./.	./.	./.	./.
chr14	74061968	rs2010070	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,72:29:73:0.986:2	0/1:0,41:29:41:1.00:2	./.	./.	0/1:28,31:28:59:0.525:2	0/1:51,43:28:94:0.457:2	0/1:40,51:29:91:0.560:2	0/1:0,87:29:87:1.00:2	./.	0/1:0,67:30:67:1.00:2	0/1:0,77:30:77:1.00:2
chr14	74083846	rs12891009	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,68:31:69:0.986:2	0/1:0,19:31:19:1.00:2	./.	./.	0/1:48,21:29:69:0.304:2	0/1:40,37:30:77:0.481:2	./.	0/1:59,41:30:100:0.410:2	./.	./.	0/1:0,73:31:73:1.00:2
chr14	74083901	rs17128948	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,45:32:75:0.600:2	./.
chr14	74086415	rs17782052	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,30:30:62:0.484:2	./.	./.	0/1:38,22:30:60:0.367:2	./.
chr14	74180078	rs185130714	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,15:33:33:0.455:2	./.	./.	./.	./.	./.	./.	./.
chr14	74180431	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,4:31:47:0.085:2	./.	./.	./.	./.	./.	./.	./.
chr14	74181044	rs62006061	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:28:3:1.00:2	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.
chr14	74189442	rs35905570	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:32:113:0.035:2	./.	./.	./.	./.
chr14	74192791	rs10147537	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,51:30:121:0.421:2
chr14	74194213	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,8:21:77:0.104:2	./.	./.	./.	./.	./.
chr14	74196383	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2	./.	./.	./.
chr14	74196581	rs11847050	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,15:32:40:0.375:2	0/1:10,15:31:25:0.600:2	./.	./.	./.	./.	./.	./.	0/1:23,28:32:51:0.549:2	./.	./.
chr14	74196686	rs2075025	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,14:31:30:0.467:2	0/1:18,12:31:30:0.400:2	./.	0/1:20,17:30:37:0.459:2	./.	0/1:12,13:31:25:0.520:2	0/1:0,31:29:31:1.00:2
chr14	74196792	rs8019058	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,36:32:80:0.450:2	0/1:37,28:30:65:0.431:2	0/1:38,26:31:64:0.406:2	./.	0/1:40,63:31:103:0.612:2	./.	0/1:22,36:32:58:0.621:2	0/1:0,62:31:62:1.00:2
chr14	74196844	rs6574140	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,17:33:28:0.607:2	0/1:12,12:33:24:0.500:2	0/1:0,7:33:7:1.00:2	0/1:20,14:33:34:0.412:2	0/1:14,8:32:22:0.364:2	0/1:22,15:32:37:0.405:2	0/1:8,11:33:19:0.579:2	0/1:0,43:32:43:1.00:2	0/1:19,16:34:35:0.457:2	0/1:0,35:32:35:1.00:2	0/1:0,37:33:37:1.00:2
chr14	74196872	rs76529453	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,6:31:17:0.353:2	0/1:8,4:32:12:0.333:2	./.	./.	./.	./.	./.	0/1:19,6:31:25:0.240:2
chr14	74203789	rs17782124	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,29:32:64:0.453:2	0/1:45,37:30:82:0.451:2	./.	./.	./.	./.	./.	0/1:51,23:31:74:0.311:2
chr14	74205687	rs201107593	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,6:16:29:0.207:2	./.	./.	./.	./.	./.
chr14	74205878	rs17782128	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,47:31:96:0.490:2	0/1:83,47:31:130:0.362:2	./.	./.	./.	./.	./.	0/1:43,24:30:67:0.358:2
chr14	74206481	rs758774	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,43:31:85:0.506:2	0/1:26,31:32:57:0.544:2	0/1:0,18:32:18:1.00:2	0/1:86,65:32:151:0.430:2	0/1:101,69:31:170:0.406:2	0/1:70,39:32:109:0.358:2	0/1:89,79:32:168:0.470:2	0/1:0,163:32:163:1.00:2	0/1:74,60:32:134:0.448:2	0/1:0,100:32:101:1.00:2	0/1:0,103:31:103:1.00:2
chr14	74206658	rs758773	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,43:30:77:0.558:2	0/1:36,36:30:72:0.500:2	./.	./.	./.	./.	./.	0/1:22,18:31:41:0.450:2
chr14	74340797	rs11159042	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:42,38:31:81:0.475:2	0/1:29,15:30:44:0.341:2	./.	0/1:29,51:30:80:0.638:2	./.	0/1:0,81:31:81:1.00:2	0/1:2,56:31:58:0.966:2	0/1:56,26:31:82:0.317:2	0/1:0,87:32:87:1.00:2	0/1:25,30:32:55:0.545:2	0/1:46,28:31:74:0.378:2
chr14	74349105	rs184275776	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,70:33:123:0.569:2	./.	./.	./.	./.	./.	./.	./.
chr14	74371667	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,4:33:93:0.043:2	./.	./.	./.	./.	./.	./.
chr14	74388908	rs1127392	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:39,46:29:85:0.541:2	0/1:28,17:29:45:0.378:2	./.	0/1:47,40:29:87:0.460:2	./.	0/1:49,39:28:88:0.443:2	0/1:1,53:28:54:0.981:2	0/1:60,41:29:101:0.406:2	0/1:3,106:29:109:0.972:2	0/1:58,23:28:81:0.284:2	0/1:66,69:29:135:0.511:2
chr14	74401030	rs45609933	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,23:33:82:0.280:2	0/1:72,40:31:112:0.357:2	./.
chr14	74402693	rs17182699	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:78,70:33:148:0.473:2	0/1:49,39:32:88:0.443:2	./.	./.	./.	./.	0/1:63,72:32:135:0.533:2	./.	./.	./.	0/1:83,86:32:169:0.509:2
chr14	74404756	rs28927675	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:66,75:32:141:0.532:2	0/1:52,32:32:84:0.381:2	./.	0/1:110,70:32:180:0.389:2	./.	0/1:1,134:32:135:0.993:2	0/1:0,118:33:118:1.00:2	0/1:104,77:33:183:0.425:2	0/1:2,176:34:178:0.989:2	0/1:73,69:33:142:0.486:2	0/1:107,81:33:188:0.431:2
chr14	74411352	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:29:63:0.063:2	./.	./.	./.	./.	./.
chr14	74413129	rs7146634	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:38,38:33:76:0.500:2	0/1:22,24:33:46:0.522:2	./.	0/1:61,44:33:105:0.419:2	./.	0/1:55,47:32:102:0.461:2	0/1:1,77:33:78:0.987:2	0/1:65,37:32:102:0.363:2	0/1:0,95:33:95:1.00:2	0/1:38,35:32:73:0.479:2	0/1:53,46:33:99:0.465:2
chr14	74413243	rs34834232	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,41:27:66:0.621:2	0/1:24,23:28:47:0.489:2	./.	./.	./.	./.	./.	./.
chr14	74416665	rs17094157	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,12:32:28:0.429:2	./.	./.	./.	./.	./.
chr14	74416698	rs11848954	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,17:29:35:0.486:2	0/1:13,6:30:19:0.316:2	./.	./.	./.	./.	./.	./.
chr14	74424938	rs3180946	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:72,60:33:132:0.455:2	0/1:45,46:33:91:0.505:2	./.	0/1:94,74:32:168:0.440:2	./.	./.	0/1:5,125:32:130:0.962:2	0/1:79,77:32:156:0.494:2	0/1:1,162:33:163:0.994:2	0/1:92,59:32:151:0.391:2	0/1:94,85:32:179:0.475:2
chr14	74427934	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.	./.	./.	./.	./.
chr14	74428445	rs8500	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:29,17:33:46:0.370:2	0/1:17,12:32:29:0.414:2	./.	0/1:30,25:32:55:0.455:2	./.	0/1:1,45:31:46:0.978:2	0/1:1,41:32:42:0.976:2	0/1:41,26:32:67:0.388:2	0/1:1,44:32:45:0.978:2	0/1:32,23:32:55:0.418:2	0/1:32,44:32:76:0.579:2
chr14	74441684	rs2074932	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:24,18:32:42:0.429:2	0/1:11,14:33:25:0.560:2	./.	0/1:17,29:33:46:0.630:2	./.	0/1:0,50:32:50:1.00:2	0/1:3,49:32:52:0.942:2	0/1:2,46:31:48:0.958:2	0/1:0,64:33:64:1.00:2	0/1:22,28:33:50:0.560:2	0/1:41,40:33:81:0.494:2
chr14	74442631	rs142846419	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	./.	./.	./.	./.	./.
chr14	74454752	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:32:99:0.040:2	./.	./.	./.
chr14	74489735	rs3784039	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:32:11:1.00:2	./.	0/1:56,24:32:80:0.300:2	./.	./.	./.	./.	./.	./.
chr14	74514674	rs3784038	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:31:6:1.00:2	0/1:46,22:32:68:0.324:2	0/1:0,41:31:41:1.00:2	0/1:0,65:31:66:1.00:2	./.	0/1:25,34:32:59:0.576:2	./.	0/1:15,16:32:31:0.516:2	0/1:60,29:31:89:0.326:2
chr14	74514717	rs114681409	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,30:31:86:0.349:2	0/1:28,27:32:55:0.491:2	./.	./.	./.	./.	./.	./.
chr14	74516497	rs34076068	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,47:31:119:0.395:2	./.	./.	./.
chr14	74523869	rs3742809	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,24:32:24:1.00:2	./.	./.	./.	0/1:14,25:33:39:0.641:2	0/1:32,34:32:66:0.515:2
chr14	74523949	rs3742808	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,44:33:75:0.587:2	0/1:28,29:32:57:0.509:2	0/1:3,41:32:44:0.932:2	./.	./.	./.	0/1:28,43:32:71:0.606:2	0/1:57,38:33:95:0.400:2
chr14	74538612	rs4899491	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,34:31:95:0.358:2	0/1:17,36:31:53:0.679:2	./.	./.	./.	./.	./.	./.
chr14	74539325	rs2302126	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,4:31:7:0.571:2	./.	./.	./.	./.	./.	./.
chr14	74711883	rs35435463	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,16:31:32:0.500:2	0/1:13,8:30:21:0.381:2	0/1:1,8:32:9:0.889:2	0/1:18,13:32:31:0.419:2	./.	./.	0/1:18,8:32:26:0.308:2	0/1:30,15:32:45:0.333:2	0/1:20,7:33:27:0.259:2	./.	0/1:0,49:32:49:1.00:2
chr14	74759006	rs3742801	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,5:31:20:0.250:2	0/1:10,5:32:15:0.333:2	0/1:0,4:32:4:1.00:2	0/1:18,20:29:38:0.526:2	0/1:1,50:31:51:0.980:2	0/1:0,23:30:23:1.00:2	0/1:25,21:31:46:0.457:2	0/1:33,16:32:49:0.327:2	0/1:15,19:33:34:0.559:2	0/1:0,36:32:36:1.00:2	./.
chr14	74759301	rs4148078	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,29:30:83:0.349:2	0/1:29,17:31:46:0.370:2	0/1:0,6:30:6:1.00:2	0/1:78,81:30:159:0.509:2	0/1:2,183:30:185:0.989:2	0/1:0,139:30:139:1.00:2	0/1:104,86:30:190:0.453:2	0/1:109,76:30:185:0.411:2	0/1:76,36:32:112:0.321:2	0/1:0,96:31:96:1.00:2	./.
chr14	74759477	rs4148077	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,33:31:66:0.500:2	0/1:29,20:31:49:0.408:2	0/1:0,12:32:12:1.00:2	0/1:59,53:31:112:0.473:2	0/1:0,114:31:114:1.00:2	0/1:0,116:31:116:1.00:2	0/1:60,65:31:125:0.520:2	0/1:76,76:31:152:0.500:2	0/1:63,66:31:129:0.512:2	0/1:1,72:32:73:0.986:2	./.
chr14	74766262	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:34:139:0.029:2	./.	./.
chr14	74766352	rs2301345	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,59:33:96:0.615:2	0/1:31,32:32:63:0.508:2	0/1:0,13:32:13:1.00:2	0/1:49,51:33:100:0.510:2	0/1:3,64:32:67:0.955:2	0/1:0,83:32:83:1.00:2	0/1:44,42:32:86:0.488:2	0/1:59,57:32:116:0.491:2	0/1:72,51:33:123:0.415:2	0/1:0,115:32:115:1.00:2	./.
chr14	74824365	rs17099563	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,24:34:62:0.387:2	./.	./.
chr14	74825218	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,29:32:56:0.518:2	./.	./.	./.	./.	./.	./.	./.
chr14	74825733	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,6:34:157:0.038:2	./.	./.
chr14	74826560	rs147433092	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,60:32:124:0.484:2	./.
chr14	74874640	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:33:196:0.020:2	./.	./.
chr14	74876181	rs12590672	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,14:33:22:0.636:2	./.	./.	0/1:1,17:33:18:0.944:2	0/1:16,11:31:27:0.407:2	./.	./.	0/1:23,12:31:35:0.343:2	./.	./.	0/1:16,7:32:23:0.304:2
chr14	74876355	rs61734850	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:46,41:31:87:0.471:2	0/1:17,29:31:46:0.630:2	./.	./.	0/1:46,54:32:100:0.540:2	0/1:48,42:32:91:0.467:2	./.	0/1:54,42:31:96:0.438:2	./.	./.	./.
chr14	74991855	rs862031	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,182:29:184:0.989:2	0/1:1,129:29:130:0.992:2	0/1:0,51:31:51:1.00:2	0/1:95,100:30:196:0.513:2	0/1:0,189:29:189:1.00:2	0/1:0,181:29:181:1.00:2	0/1:0,187:30:187:1.00:2	0/1:1,188:29:189:0.995:2	0/1:86,101:30:187:0.540:2	0/1:0,185:29:185:1.00:2	0/1:103,88:28:191:0.461:2
chr14	74992800	rs699374	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:24,25:31:49:0.510:2	0/1:16,9:33:25:0.360:2	0/1:2,4:31:6:0.667:2	./.	0/1:51,43:32:94:0.457:2	0/1:35,33:32:68:0.485:2	./.	0/1:44,52:32:96:0.542:2	./.	./.	./.
chr14	75002683	rs368193784	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,7:30:10:0.700:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	75019002	rs61738025	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,20:29:43:0.465:2	./.	0/1:25,28:28:54:0.528:2	./.	./.	./.	./.	./.
chr14	75022271	rs2304707	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,40:30:79:0.506:2	./.	0/1:36,44:31:80:0.550:2	./.	./.	./.	./.	./.
chr14	75152326	rs367961105	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,44:32:116:0.379:2	./.	./.	./.
chr14	75230837	rs12885527	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,57:31:116:0.491:2	./.	./.	./.	./.
chr14	75230953	rs45599947	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,19:30:20:0.950:2	./.	./.	./.	./.	./.	./.
chr14	75245368	rs57404741	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,17:31:37:0.459:2	0/1:14,15:32:29:0.517:2	./.	./.	./.	0/1:22,12:31:34:0.353:2	./.	0/1:23,16:31:39:0.410:2	./.	0/1:19,13:31:32:0.406:2	./.
chr14	75248615	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:136,13:33:149:0.087:2	./.	./.	./.	./.	./.	./.
chr14	75248652	rs45617140	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,74:30:149:0.497:2	./.	./.	0/1:79,58:30:137:0.423:2
chr14	75248669	rs2287401	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,46:30:102:0.451:2	0/1:31,20:30:51:0.392:2	./.	./.	./.	0/1:61,56:29:117:0.479:2	./.	0/1:84,67:28:151:0.444:2	./.	0/1:43,30:29:73:0.411:2	./.
chr14	75265191	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,4:28:55:0.073:2	./.	./.	./.	./.	./.	./.	./.
chr14	75265343	rs200021043	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,12:30:19:0.632:2	./.	./.
chr14	75266177	rs192254104	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,59:30:125:0.472:2	./.	./.	./.	./.	./.	./.	./.
chr14	75279395	rs2302834	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:31:24:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,5:32:5:1.00:2	0/1:17,15:31:33:0.469:2	0/1:0,23:31:23:1.00:2	0/1:0,46:30:46:1.00:2	0/1:23,20:30:43:0.465:2	0/1:0,37:29:37:1.00:2	./.	0/1:9,18:32:27:0.667:2	0/1:0,31:30:32:1.00:2
chr14	75348664	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,10:33:16:0.625:2	./.
chr14	75359670	rs2230237	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,34:30:59:0.576:2	0/1:17,21:31:38:0.553:2	0/1:7,7:31:14:0.500:2	0/1:58,43:30:101:0.426:2	0/1:43,52:29:95:0.547:2	0/1:56,46:30:103:0.451:2	./.	0/1:61,44:30:105:0.419:2	0/1:0,80:30:80:1.00:2	0/1:0,66:30:66:1.00:2	./.
chr14	75360066	rs142872233	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,79:32:151:0.523:2	./.	./.
chr14	75367035	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,4:30:104:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr14	75367050	rs201581688	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,4:31:99:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr14	75367807	rs20578	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,81:30:150:0.566:2	./.	./.	./.	./.	0/1:2,137:30:143:0.986:2	0/1:52,67:30:119:0.563:2	./.
chr14	75373245	rs3742784	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,27:33:48:0.563:2	0/1:18,15:34:33:0.455:2	./.	./.	0/1:56,58:32:114:0.509:2	0/1:27,27:33:54:0.500:2	./.	0/1:37,59:32:96:0.615:2	./.	0/1:27,29:32:56:0.518:2	./.
chr14	75378487	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,9:17:51:0.176:2	./.	0/1:54,6:19:62:0.100:2	./.	./.	./.	0/1:41,12:15:53:0.226:2
chr14	75386576	rs2286913	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,35:32:62:0.565:2	0/1:17,22:31:39:0.564:2	0/1:1,2:31:3:0.667:2	0/1:43,43:31:86:0.500:2	./.	./.	0/1:1,87:31:88:0.989:2	0/1:49,46:31:95:0.484:2	./.	./.	0/1:0,67:31:67:1.00:2
chr14	75388183	rs7156590	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,33:31:83:0.398:2	0/1:30,21:32:51:0.412:2	0/1:9,7:31:16:0.438:2	0/1:46,57:31:103:0.553:2	./.	./.	0/1:0,82:32:82:1.00:2	0/1:73,52:32:125:0.416:2	./.	./.	0/1:1,70:32:71:0.986:2
chr14	75412908	rs8005277	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:27:32:1.00:2	0/1:0,26:28:26:1.00:2	0/1:0,6:28:6:1.00:2	0/1:0,54:27:54:1.00:2	0/1:1,42:26:43:0.977:2	0/1:0,37:26:37:1.00:2	0/1:0,37:27:37:1.00:2	0/1:0,31:27:31:1.00:2	0/1:0,35:29:35:1.00:2	0/1:0,45:28:45:1.00:2	0/1:0,32:27:32:1.00:2
chr14	75416199	rs200471804	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,15:18:94:0.161:2	0/1:96,16:16:112:0.143:2	0/1:69,14:16:83:0.169:2	./.	./.	./.	./.	./.
chr14	75483812	rs13712	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,51:33:97:0.526:2	0/1:51,27:32:78:0.346:2	0/1:0,16:34:16:1.00:2	0/1:97,81:32:178:0.455:2	0/1:69,96:32:165:0.582:2	0/1:0,163:32:164:1.00:2	0/1:0,160:33:160:1.00:2	0/1:3,176:33:179:0.983:2	./.	./.	0/1:2,154:32:156:0.987:2
chr14	75489756	rs45622433	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,13:32:37:0.351:2	./.	./.	./.	./.	./.	./.
chr14	75508409	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:34:109:0.037:2	./.	./.
chr14	75513321	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:33:103:0.039:2	./.
chr14	75513463	rs17782839	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,35:32:72:0.486:2	./.	./.	./.
chr14	75513477	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:117,4:31:121:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr14	75513828	rs175080	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:47,29:33:76:0.382:2	0/1:29,23:33:52:0.442:2	./.	0/1:50,29:33:79:0.367:2	0/1:26,26:32:52:0.500:2	./.	./.	./.	0/1:1,92:33:93:0.989:2	0/1:1,59:33:60:0.983:2	./.
chr14	75513883	rs175081	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:33:68:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,79:33:79:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,69:34:69:1.00:2	0/1:0,47:33:47:1.00:2	0/1:0,108:33:108:1.00:2
chr14	75515101	rs28756982	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,33:31:110:0.300:2	./.	./.	./.	./.	./.
chr14	75515361	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,4:32:64:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr14	75515460	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:34:95:0.043:2	./.
chr14	75515951	rs61755655	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,26:29:60:0.433:2
chr14	75537381	rs11546525	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,18:31:32:0.563:2	0/1:13,13:32:26:0.500:2	0/1:2,4:32:6:0.667:2	0/1:24,20:32:44:0.455:2	0/1:33,18:32:51:0.353:2	0/1:32,28:32:60:0.467:2	0/1:2,56:32:58:0.966:2	0/1:0,45:31:45:1.00:2	./.	./.	0/1:0,50:33:50:1.00:2
chr14	75538217	rs3742778	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,12:31:23:0.522:2	0/1:6,7:31:13:0.538:2	0/1:0,2:29:2:1.00:2	0/1:13,6:31:19:0.316:2	0/1:6,8:31:14:0.571:2	./.	0/1:0,8:32:8:1.00:2	0/1:0,16:32:16:1.00:2	./.	./.	0/1:0,25:31:25:1.00:2
chr14	75558059	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:35:70:0.057:2	./.	./.
chr14	75558163	rs112467144	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:32:5:0.800:2	./.	./.	./.	./.	./.
chr14	75567726	rs193018616	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,12:30:37:0.324:2	./.	./.	./.	./.	./.	./.
chr14	75574087	rs10146482	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:77,45:32:122:0.369:2	0/1:40,33:32:73:0.452:2	0/1:0,11:32:11:1.00:2	0/1:93,65:32:158:0.411:2	0/1:130,68:31:198:0.343:2	0/1:108,82:32:190:0.432:2	0/1:0,175:32:175:1.00:2	0/1:2,142:31:144:0.986:2	./.	./.	0/1:0,118:33:119:1.00:2
chr14	75590822	rs8017642	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,57:32:109:0.523:2	0/1:33,20:33:53:0.377:2	0/1:0,12:31:12:1.00:2	0/1:63,64:32:128:0.504:2	0/1:71,81:31:152:0.533:2	0/1:67,73:31:140:0.521:2	0/1:1,146:32:147:0.993:2	0/1:0,151:32:151:1.00:2	./.	./.	0/1:1,108:32:109:0.991:2
chr14	75590846	rs175449	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:58,48:31:106:0.453:2	0/1:24,31:31:55:0.564:2	./.	0/1:76,78:31:154:0.506:2	0/1:91,76:31:167:0.455:2	0/1:90,70:30:160:0.438:2	./.	./.	0/1:0,174:32:174:1.00:2	0/1:0,115:31:115:1.00:2	./.
chr14	75746690	rs1046117	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,30:31:62:0.484:2	0/1:28,21:30:49:0.429:2	0/1:0,5:32:5:1.00:2	0/1:50,60:31:110:0.545:2	0/1:0,87:30:87:1.00:2	0/1:44,44:30:88:0.500:2	0/1:0,84:31:84:1.00:2	0/1:0,109:31:109:1.00:2	0/1:38,36:31:74:0.486:2	0/1:1,61:31:62:0.984:2	0/1:39,26:31:65:0.400:2
chr14	75904660	rs3625	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,21:29:21:1.00:2	0/1:0,8:27:8:1.00:2	0/1:0,4:29:4:1.00:2	0/1:7,12:30:19:0.632:2	0/1:51,4:31:55:0.073:2	0/1:8,15:27:23:0.652:2	0/1:12,11:30:23:0.478:2	0/1:0,31:29:31:1.00:2	0/1:0,22:29:22:1.00:2	./.	0/1:17,4:28:21:0.190:2
chr14	75935994	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,4:29:94:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr14	76045362	rs2287015	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:30:5:1.00:2	0/1:23,18:30:41:0.439:2	./.	0/1:22,27:31:49:0.551:2	./.	0/1:34,23:31:57:0.404:2	./.	0/1:23,14:31:37:0.378:2	./.
chr14	76045507	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:156,10:22:166:0.060:2	./.	0/1:132,14:13:146:0.096:2	./.	./.	./.	./.
chr14	76045691	rs8011292	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,104:32:176:0.591:2	./.	./.	./.
chr14	76045858	rs2287016	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,6:31:9:0.667:2	0/1:38,37:31:75:0.493:2	./.	0/1:37,46:30:83:0.554:2	./.	0/1:44,49:31:93:0.527:2	./.	0/1:22,17:31:39:0.436:2	./.
chr14	76045963	rs2287017	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,8:30:16:0.500:2	0/1:45,50:31:95:0.526:2	./.	0/1:30,40:30:70:0.571:2	./.	0/1:42,55:29:97:0.567:2	./.	0/1:25,27:30:52:0.519:2	./.
chr14	76090978	rs45479302	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,20:31:48:0.417:2	./.	./.	0/1:24,28:30:52:0.538:2
chr14	76156609	rs2303345	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:30:36:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,17:31:17:1.00:2	0/1:54,22:30:76:0.289:2	./.	0/1:33,30:30:63:0.476:2	0/1:48,54:31:103:0.529:2	0/1:55,44:30:99:0.444:2	0/1:0,65:31:66:1.00:2	0/1:39,37:30:76:0.487:2	0/1:36,47:31:84:0.566:2
chr14	76249853	rs375900619	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,35:31:57:0.614:2	./.	./.	./.	./.	./.
chr14	76330181	rs3742764	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,23:32:54:0.426:2	./.	0/1:21,12:30:33:0.364:2	./.	./.	0/1:24,36:32:60:0.600:2	./.	./.
chr14	76349106	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:33:44:0.091:2	./.	./.	./.	./.
chr14	76368496	rs138045400	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,15:31:38:0.395:2	0/1:15,9:32:24:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	76368544	rs1133834	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,26:34:54:0.491:2	./.	0/1:48,51:33:99:0.515:2	./.	0/1:27,18:32:45:0.400:2	0/1:30,37:33:67:0.552:2
chr14	76447057	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:33:165:0.024:2	./.	./.	./.	./.	./.
chr14	76543004	rs17783366	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,19:32:65:0.292:2	0/1:13,22:32:35:0.629:2	0/1:9,8:32:17:0.471:2	0/1:37,32:31:69:0.464:2	./.	0/1:2,72:31:74:0.973:2	./.	0/1:53,25:32:78:0.321:2	./.	./.	./.
chr14	76638238	rs35397460	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,55:31:118:0.470:2	./.	./.	./.	./.	./.	./.	./.
chr14	76957887	rs2361293	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,93:29:93:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,150:29:150:1.00:2	0/1:0,171:29:171:1.00:2	0/1:0,143:29:143:1.00:2	0/1:0,173:29:173:1.00:2	0/1:0,151:29:151:1.00:2	0/1:0,144:30:144:1.00:2	0/1:0,110:29:110:1.00:2	0/1:0,86:28:86:1.00:2
chr14	76964655	rs61742642	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:27,26:30:53:0.491:2	0/1:23,20:30:43:0.465:2	./.	./.	0/1:47,47:30:94:0.500:2	./.	./.	./.	./.	./.	./.
chr14	77236380	rs3815550	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,41:31:41:1.00:2	0/1:0,33:31:33:1.00:2	./.	0/1:0,92:30:92:1.00:2	0/1:0,95:29:95:1.00:2	0/1:52,34:30:86:0.395:2	0/1:0,82:30:82:1.00:2	0/1:2,89:30:91:0.978:2	0/1:0,92:31:92:1.00:2	0/1:29,25:31:54:0.463:2	0/1:37,39:30:76:0.513:2
chr14	77239567	rs2075772	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,17:31:30:0.567:2	0/1:6,4:28:10:0.400:2	./.	0/1:0,18:29:18:1.00:2	0/1:15,6:31:21:0.286:2	./.	0/1:0,19:31:19:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,23:31:23:1.00:2	./.	0/1:23,26:31:49:0.531:2
chr14	77245286	rs2242621	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,24:30:43:0.558:2	0/1:6,14:30:20:0.700:2	./.	./.	./.	0/1:28,22:29:50:0.440:2	./.	./.	./.	./.	./.
chr14	77269750	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:33:65:0.062:2	./.
chr14	77269788	rs2075773	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,27:32:62:0.435:2	0/1:22,12:32:34:0.353:2	./.	./.	./.	0/1:51,41:33:92:0.446:2	./.	./.	./.	./.	./.
chr14	77272992	rs45499197	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,32:31:69:0.464:2	0/1:29,16:34:45:0.356:2	./.	./.
chr14	77274468	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:31:71:0.056:2	./.	./.	./.	./.	./.
chr14	77304292	rs4903497	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,15:33:31:0.484:2	./.	0/1:20,11:34:31:0.355:2	./.	./.	./.	0/1:57,28:33:85:0.329:2
chr14	77332367	rs1882844	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,109:31:110:0.991:2	0/1:0,61:32:61:1.00:2	0/1:0,14:31:14:1.00:2	0/1:1,147:31:148:0.993:2	0/1:1,128:31:129:0.992:2	0/1:0,152:31:152:1.00:2	0/1:0,149:31:149:1.00:2	0/1:0,168:31:168:1.00:2	0/1:0,149:32:149:1.00:2	0/1:0,116:32:116:1.00:2	0/1:0,155:32:155:1.00:2
chr14	77332408	rs7160583	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,60:28:107:0.561:2	0/1:39,35:29:74:0.473:2	./.	./.	./.	0/1:118,66:29:184:0.359:2	./.	./.	./.	0/1:66,63:29:129:0.488:2	0/1:101,58:29:159:0.365:2
chr14	77492180	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:28:75:0.053:2	./.	./.	./.	./.	./.
chr14	77492740	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,4:23:25:0.160:2	./.	./.	./.	./.	./.	./.
chr14	77492858	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,58:30:81:0.716:2	./.	./.	./.	./.	./.	./.	./.
chr14	77492891	rs879027	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,23:32:58:0.397:2	0/1:25,13:31:38:0.342:2	0/1:0,12:32:12:1.00:2	0/1:71,29:31:100:0.290:2	0/1:70,59:32:129:0.457:2	0/1:72,46:32:118:0.390:2	./.	./.	0/1:54,29:32:83:0.349:2	0/1:0,50:32:50:1.00:2	./.
chr14	77493788	rs28692724	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,3:31:25:0.120:2	0/1:13,3:31:16:0.188:2	0/1:17,8:28:25:0.320:2	./.	./.	0/1:1,8:31:10:0.889:2	0/1:0,4:28:4:1.00:2
chr14	77493794	rs28718623	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,5:31:18:0.278:2	./.	./.	0/1:0,3:34:3:1.00:2	0/1:0,3:30:3:1.00:2
chr14	77493815	rs7156498	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:33:9:0.333:2	./.	./.	./.	./.
chr14	77493875	rs71428775	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.
chr14	77494484	rs76980172	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:32:5:0.800:2	./.	./.	./.	./.
chr14	77494682	rs12897921	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,6:31:20:0.300:2	0/1:8,3:33:11:0.273:2	0/1:0,5:30:5:1.00:2	0/1:14,4:29:18:0.222:2	0/1:9,6:32:15:0.400:2	0/1:12,16:28:28:0.571:2	./.	./.	0/1:11,7:33:18:0.389:2	0/1:0,17:24:17:1.00:2	./.
chr14	77494722	rs78010105	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,11:31:15:0.733:2	./.	./.
chr14	77576271	rs80189719	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,34:29:86:0.395:2	./.	./.	./.	./.	./.	./.	./.
chr14	77580068	rs759593	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,46:33:85:0.541:2	./.	./.	./.	./.	./.	./.	./.
chr14	77691753	rs404728	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,39:32:39:1.00:2	0/1:0,22:32:22:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	77697967	rs375566	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,171:28:171:1.00:2	0/1:0,99:28:99:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,182:29:183:1.00:2	0/1:0,184:30:184:1.00:2	0/1:0,177:29:177:1.00:2	0/1:0,181:29:181:1.00:2	0/1:0,180:29:180:1.00:2	0/1:0,181:30:181:1.00:2	0/1:0,136:29:136:1.00:2	0/1:0,183:28:183:1.00:2
chr14	77703057	rs403291	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,93:30:93:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,85:30:85:1.00:2	./.	0/1:40,55:30:96:0.579:2	0/1:77,58:30:135:0.430:2	0/1:60,57:30:117:0.487:2	./.	0/1:0,84:30:84:1.00:2	./.
chr14	77708804	rs61731611	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,30:30:75:0.400:2	./.	./.	0/1:60,57:30:117:0.487:2	0/1:0,66:31:66:1.00:2	./.	0/1:0,72:30:72:1.00:2
chr14	77714802	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,7:21:48:0.146:2	./.
chr14	77745193	rs3209079	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:33:4:1.00:2	0/1:32,28:31:60:0.467:2	0/1:28,26:33:54:0.481:2	0/1:27,28:32:55:0.509:2	0/1:0,50:33:50:1.00:2	0/1:1,49:33:50:0.980:2	0/1:0,43:34:43:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,46:32:46:1.00:2
chr14	77746812	rs4540995	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,46:29:92:0.500:2	./.	./.	./.
chr14	77751925	rs2270419	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:31:10:1.00:2	0/1:30,13:31:43:0.302:2	0/1:31,6:31:37:0.162:2	0/1:19,17:29:36:0.472:2	0/1:0,22:29:22:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,50:31:50:1.00:2
chr14	77793207	rs7975	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,19:31:62:0.306:2	0/1:31,23:32:54:0.426:2	0/1:27,24:32:51:0.471:2	0/1:33,30:31:63:0.476:2	./.	./.	0/1:2,47:31:49:0.959:2	0/1:28,16:32:44:0.364:2
chr14	77794283	rs1046428	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:30:7:1.00:2	0/1:35,33:30:68:0.485:2	0/1:36,52:30:88:0.591:2	0/1:44,34:30:78:0.436:2	0/1:0,70:30:70:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,58:29:58:1.00:2	0/1:0,68:29:68:1.00:2	0/1:0,38:30:38:1.00:2
chr14	77796641	rs731346	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:31:102:1.00:2	0/1:0,53:32:53:1.00:2	0/1:7,5:31:12:0.417:2	0/1:0,119:30:119:1.00:2	0/1:0,109:31:109:1.00:2	0/1:1,92:31:93:0.989:2	0/1:129,4:32:133:0.030:2	./.	./.	0/1:0,98:31:98:1.00:2	./.
chr14	77809674	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:34:127:0.031:2	./.	./.
chr14	77843814	rs11844594	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,29:30:31:0.967:2	0/1:1,21:30:22:0.955:2	0/1:3,3:31:6:0.500:2	0/1:31,20:31:51:0.392:2	./.	0/1:25,19:31:44:0.432:2	0/1:19,19:31:38:0.500:2	0/1:29,20:31:49:0.408:2	0/1:27,12:31:39:0.308:2	./.	0/1:28,20:30:48:0.417:2
chr14	77843971	rs45540040	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,23:30:24:0.958:2	0/1:0,15:31:15:1.00:2	./.	0/1:23,17:29:40:0.425:2	./.	0/1:22,23:30:45:0.511:2	0/1:15,17:30:32:0.531:2	./.	./.	./.	./.
chr14	77844227	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:28:48:0.083:2	./.	./.
chr14	77844265	rs45527334	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,21:31:21:1.00:2	0/1:0,7:31:7:1.00:2	./.	0/1:9,7:31:16:0.438:2	./.	0/1:12,8:31:20:0.400:2	0/1:17,4:28:21:0.190:2	./.	./.	./.	./.
chr14	77844592	rs10133824	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,26:31:27:0.963:2	0/1:0,11:32:11:1.00:2	./.	0/1:17,6:31:23:0.261:2	./.	0/1:11,11:30:22:0.500:2	0/1:5,4:32:9:0.444:2	./.	./.	./.	./.
chr14	77844869	rs4903576	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,21:31:21:1.00:2	0/1:2,22:32:24:0.917:2	./.	0/1:17,16:32:33:0.485:2	./.	0/1:14,17:32:31:0.548:2	0/1:11,5:33:16:0.313:2	0/1:12,7:31:19:0.368:2	0/1:12,21:33:33:0.636:2	./.	0/1:11,16:31:27:0.593:2
chr14	77845120	rs184667014	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,26:31:58:0.448:2	0/1:8,9:32:17:0.529:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	77845121	rs2193595	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,56:30:57:0.982:2	0/1:0,17:31:17:1.00:2	./.	0/1:12,32:30:44:0.727:2	./.	0/1:26,34:28:60:0.567:2	0/1:21,15:29:36:0.417:2	0/1:16,18:30:34:0.529:2	0/1:21,20:29:41:0.488:2	./.	0/1:30,24:28:54:0.444:2
chr14	77846815	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:33:96:0.042:2	./.	./.
chr14	77880305	rs10130481	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,49:31:49:1.00:2	0/1:1,27:31:28:0.964:2	./.	0/1:35,25:31:60:0.417:2	./.	0/1:46,40:29:86:0.465:2	0/1:34,34:30:68:0.500:2	./.	./.	./.	./.
chr14	77910631	rs148623263	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,51:34:118:0.432:2	./.	./.
chr14	77917580	rs186120678	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,58:29:134:0.433:2	./.	./.	./.	./.	./.	./.	./.
chr14	77926011	rs1061629	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,11:32:18:0.611:2	0/1:64,50:33:114:0.439:2	0/1:2,123:32:125:0.984:2	0/1:76,63:32:139:0.453:2	0/1:80,80:33:160:0.500:2	0/1:60,72:32:132:0.545:2	0/1:69,73:33:142:0.514:2	0/1:0,89:33:89:1.00:2	0/1:75,44:32:119:0.370:2
chr14	77928525	rs1061638	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,7:29:20:0.350:2	0/1:106,89:33:195:0.456:2	0/1:0,178:32:179:1.00:2	0/1:101,81:32:182:0.445:2	0/1:76,79:33:155:0.510:2	0/1:93,102:32:196:0.523:2	0/1:1,189:33:190:0.995:2	0/1:2,189:33:191:0.990:2	0/1:92,100:33:192:0.521:2
chr14	77935520	rs7250	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,9:30:25:0.360:2	0/1:86,94:31:180:0.522:2	0/1:1,165:31:166:0.994:2	0/1:82,80:31:163:0.494:2	0/1:82,87:31:169:0.515:2	0/1:86,91:32:178:0.514:2	0/1:84,80:32:164:0.488:2	0/1:1,167:31:168:0.994:2	0/1:85,79:32:164:0.482:2
chr14	77942316	rs3742732	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,5:29:6:0.833:2	./.	./.	./.	./.	./.	./.	./.
chr14	77950856	rs140927914	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,72:31:156:0.462:2	./.	./.	./.	./.
chr14	77951124	rs3742728	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:29:82:1.00:2	0/1:2,59:30:61:0.967:2	0/1:10,12:29:22:0.545:2	0/1:96,76:30:172:0.442:2	0/1:0,190:29:190:1.00:2	0/1:100,72:30:172:0.419:2	0/1:0,173:30:174:1.00:2	0/1:89,96:30:185:0.519:2	./.	0/1:1,169:30:171:0.994:2	0/1:72,78:29:150:0.520:2
chr14	78028803	rs2364602	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:32:54:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,59:33:59:1.00:2	0/1:0,99:32:99:1.00:2	0/1:44,37:32:81:0.457:2	0/1:0,67:32:67:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,55:33:55:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,63:33:63:1.00:2
chr14	78140329	rs6493	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:29:7:0.429:2	./.	0/1:51,25:29:76:0.329:2	0/1:32,48:30:81:0.600:2	./.	0/1:55,41:30:96:0.427:2	./.	0/1:47,35:31:82:0.427:2	0/1:49,51:30:102:0.510:2
chr14	78140355	rs6494	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,20:31:73:0.274:2	0/1:33,35:31:68:0.515:2	./.	0/1:42,40:31:82:0.488:2	./.	0/1:32,32:31:64:0.500:2	0/1:37,47:31:84:0.560:2
chr14	78161086	rs374787102	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,46:30:89:0.517:2	./.	./.	./.
chr14	78174473	rs11159286	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:30:68:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,70:30:70:1.00:2	0/1:0,90:31:90:1.00:2	0/1:45,47:30:92:0.511:2	0/1:2,65:31:67:0.970:2	0/1:0,92:30:92:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,90:31:90:1.00:2
chr14	78184566	rs176960	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,36:31:84:0.429:2	0/1:24,11:32:35:0.314:2	0/1:0,7:31:7:1.00:2	0/1:43,19:31:62:0.306:2	0/1:0,51:30:51:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,42:30:42:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,66:31:66:1.00:2	0/1:27,31:31:58:0.534:2	0/1:56,46:31:102:0.451:2
chr14	78197365	rs114763	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,37:33:71:0.521:2	0/1:32,19:32:51:0.373:2	0/1:7,3:31:10:0.300:2	0/1:28,28:32:56:0.500:2	0/1:41,25:31:66:0.379:2	0/1:45,29:31:74:0.392:2	0/1:1,35:32:36:0.972:2	0/1:54,38:32:92:0.413:2	0/1:0,65:32:65:1.00:2	./.	./.
chr14	78217698	rs61745425	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,37:29:83:0.446:2	0/1:31,34:29:66:0.523:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	78234796	rs8015313	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,19:29:48:0.396:2	0/1:29,18:28:47:0.383:2	./.	0/1:29,27:29:56:0.482:2	./.	0/1:27,14:29:41:0.341:2	0/1:50,17:30:68:0.254:2
chr14	78235834	rs72687241	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,8:32:17:0.471:2	0/1:6,13:30:19:0.684:2
chr14	78374172	rs34272020	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,28:32:67:0.418:2	0/1:37,34:30:71:0.479:2	./.	0/1:32,44:31:76:0.579:2	./.	./.	./.
chr14	78390880	rs2302944	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,10:29:25:0.400:2	./.	./.	./.	0/1:21,23:29:44:0.523:2	./.	./.	./.
chr14	79181226	rs1004212	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,73:32:154:0.474:2	./.	./.	./.	0/1:88,80:32:168:0.476:2	./.	./.	./.
chr14	79270093	rs2288140	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,35:29:84:0.417:2	./.
chr14	79423631	rs35008707	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,94:31:196:0.480:2	./.	./.	./.	./.
chr14	80130266	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:32:130:0.031:2	./.	./.	./.	./.
chr14	80669579	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:33:82:0.049:2	./.	./.
chr14	80669580	rs225014	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:19,21:31:40:0.525:2	0/1:11,17:30:28:0.607:2	0/1:8,4:32:12:0.333:2	./.	0/1:2,91:31:93:0.978:2	0/1:65,45:33:110:0.409:2	./.	./.	0/1:44,37:34:81:0.457:2	./.	./.
chr14	81251255	rs327463	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,9:31:21:0.429:2	./.	0/1:48,37:30:85:0.435:2	0/1:71,56:30:127:0.441:2	0/1:2,72:30:74:0.973:2	0/1:63,62:30:125:0.496:2	./.	0/1:62,40:30:102:0.392:2	0/1:65,81:31:146:0.555:2
chr14	81259254	rs45535733	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,82:32:155:0.529:2	./.
chr14	81259347	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,51:30:139:0.367:2	./.	./.	./.	./.	./.	./.
chr14	81297635	rs116610923	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,24:33:62:0.387:2	./.	./.	./.	./.	./.	./.	./.
chr14	81382845	rs7160694	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,62:31:101:0.614:2	./.
chr14	81422178	rs2234919	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,30:30:54:0.556:2	0/1:37,30:31:67:0.448:2	0/1:35,29:30:64:0.453:2	./.	./.	0/1:30,9:28:39:0.231:2
chr14	81574959	rs3783942	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,19:33:51:0.373:2	0/1:18,14:32:32:0.438:2	./.	0/1:29,27:33:56:0.482:2	0/1:1,31:33:32:0.969:2	0/1:0,43:32:43:1.00:2	0/1:1,25:32:26:0.962:2	0/1:46,28:32:74:0.378:2	0/1:0,55:34:55:1.00:2	0/1:0,62:33:62:1.00:2	0/1:49,23:32:72:0.319:2
chr14	81575005	rs3783941	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,16:33:41:0.390:2	0/1:15,15:33:30:0.500:2	0/1:2,3:30:5:0.600:2	0/1:26,32:32:58:0.552:2	0/1:1,27:31:28:0.964:2	0/1:0,32:32:32:1.00:2	0/1:2,35:32:37:0.946:2	0/1:46,25:32:71:0.352:2	0/1:0,37:32:37:1.00:2	0/1:0,51:31:51:1.00:2	0/1:38,15:32:53:0.283:2
chr14	81609723	rs201417739	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,20:9:112:0.180:2	./.	0/1:89,22:10:111:0.198:2	./.	0/1:79,15:14:94:0.160:2	0/1:60,12:16:72:0.167:2
chr14	81610583	rs1991517	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,28:33:63:0.444:2	0/1:21,15:31:36:0.417:2	0/1:0,5:32:5:1.00:2	0/1:43,45:32:88:0.511:2	0/1:0,47:32:47:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,64:32:64:1.00:2	0/1:39,32:31:71:0.451:2	0/1:0,59:32:59:1.00:2	0/1:0,51:32:51:1.00:2	0/1:56,39:33:95:0.411:2
chr14	81662561	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:30:78:0.051:2	./.	./.	./.	./.	./.
chr14	81686825	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,8:33:14:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	81737076	rs2241621	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:51,55:30:106:0.519:2	0/1:42,38:31:80:0.475:2	0/1:0,19:30:19:1.00:2	./.	0/1:103,92:30:195:0.472:2	0/1:107,72:30:179:0.402:2	0/1:3,182:30:185:0.984:2	./.	0/1:78,78:31:156:0.500:2	0/1:72,60:30:132:0.455:2	0/1:0,139:30:139:1.00:2
chr14	81743565	rs36017951	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,46:32:105:0.438:2
chr14	81743718	rs34323725	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:52,39:32:91:0.429:2	0/1:48,27:32:75:0.360:2	./.	0/1:74,51:31:125:0.408:2	./.	./.	./.	0/1:86,71:31:157:0.452:2	./.	0/1:65,54:32:119:0.454:2	./.
chr14	81744736	rs3813535	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:31:62:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,6:32:6:1.00:2	0/1:1,84:31:85:0.988:2	0/1:0,66:31:66:1.00:2	0/1:49,27:32:76:0.355:2	0/1:1,62:32:63:0.984:2	0/1:2,85:32:87:0.977:2	0/1:67,43:33:110:0.391:2	0/1:0,76:31:76:1.00:2	0/1:0,106:32:106:1.00:2
chr14	81952649	rs11851475	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,60:33:109:0.550:2	./.	./.
chr14	81993084	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,5:30:152:0.033:2	./.	./.	./.	./.	./.
chr14	81993205	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:30:103:0.039:2	./.	./.	./.
chr14	86088056	rs10141266	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:30:77:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,132:30:132:1.00:2	0/1:0,125:30:125:1.00:2	0/1:0,86:30:86:1.00:2	0/1:0,141:30:141:1.00:2	0/1:0,136:30:136:1.00:2	0/1:0,113:31:113:1.00:2	0/1:0,102:31:102:1.00:2	0/1:0,115:29:116:1.00:2
chr14	86088790	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,5:33:69:0.072:2	./.
chr14	86089253	rs17714100	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,81:31:173:0.471:2	./.	./.	./.	./.	./.	./.
chr14	86089315	rs17646457	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,185:31:187:0.989:2	0/1:0,92:32:92:1.00:2	./.	./.	./.	./.	./.	./.	0/1:105,82:32:187:0.439:2	./.	./.
chr14	86089508	rs17646495	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,57:29:122:0.467:2	./.	./.	./.	./.	./.	./.
chr14	86090772	rs80232940	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,22:31:61:0.361:2	./.	./.	./.	0/1:19,18:32:37:0.486:2	0/1:16,25:32:41:0.610:2	./.	./.
chr14	86090801	rs138269960	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:33:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	86091242	rs28364863	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,40:31:117:0.342:2	./.	./.	./.	./.	./.	./.
chr14	86091415	rs10145152	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:31:40:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,52:32:52:1.00:2
chr14	86091910	rs17121383	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,9:31:19:0.474:2	./.	./.	./.	./.	./.	./.
chr14	86092246	rs2038494	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,56:28:57:0.982:2	0/1:0,31:29:31:1.00:2	./.	0/1:30,23:29:53:0.434:2	0/1:1,46:28:47:0.979:2	0/1:0,49:28:49:1.00:2	0/1:28,26:28:54:0.481:2	0/1:41,26:29:67:0.388:2	0/1:41,22:29:63:0.349:2	0/1:0,62:29:62:1.00:2	0/1:0,66:28:66:1.00:2
chr14	86093344	rs2239576	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,78:31:78:1.00:2	0/1:0,48:31:48:1.00:2	./.	0/1:42,52:30:94:0.553:2	0/1:1,61:30:62:0.984:2	0/1:0,96:30:96:1.00:2	0/1:49,62:30:111:0.559:2	0/1:54,42:30:96:0.438:2	0/1:43,49:32:92:0.533:2	0/1:0,78:31:78:1.00:2	0/1:0,91:31:92:1.00:2
chr14	86093378	rs1129671	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,25:32:60:0.417:2	0/1:41,48:32:89:0.539:2	./.	0/1:49,48:32:97:0.495:2	./.	0/1:38,29:33:67:0.433:2	0/1:32,64:33:96:0.667:2
chr14	86093385	rs17094455	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,32:29:64:0.500:2	./.	./.	./.	./.	./.	./.
chr14	86093422	rs17094456	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,31:30:66:0.470:2	./.	./.	./.	./.	./.	./.
chr14	86094035	rs10309	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:113,55:32:168:0.327:2	0/1:108,85:31:193:0.440:2	./.	0/1:123,75:32:198:0.379:2	./.	0/1:89,96:32:185:0.519:2	0/1:106,87:33:193:0.451:2
chr14	88401213	rs421262	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:27:25:1.00:2	0/1:0,11:28:11:1.00:2	0/1:0,3:21:3:1.00:2	0/1:0,17:28:17:1.00:2	0/1:0,19:28:19:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,21:29:21:1.00:2	0/1:0,24:29:24:1.00:2	0/1:0,18:28:18:1.00:2	0/1:0,28:28:28:1.00:2
chr14	88407875	rs421466	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:31:44:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,58:31:58:1.00:2
chr14	88407888	rs398607	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:22,24:33:46:0.522:2	0/1:12,16:33:28:0.571:2	./.	0/1:10,19:32:29:0.655:2	./.	0/1:22,25:32:47:0.532:2	0/1:11,29:32:40:0.725:2	0/1:33,29:32:62:0.468:2	0/1:0,61:33:61:1.00:2	./.	0/1:34,28:31:62:0.452:2
chr14	88411947	rs367327	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,131:28:131:1.00:2	0/1:0,78:28:78:1.00:2	0/1:0,11:27:11:1.00:2	0/1:0,144:29:144:1.00:2	0/1:0,129:28:129:1.00:2	0/1:0,141:28:141:1.00:2	0/1:0,150:28:150:1.00:2	0/1:0,142:29:142:1.00:2	0/1:0,146:29:146:1.00:2	0/1:0,121:28:121:1.00:2	0/1:0,140:28:140:1.00:2
chr14	88414211	rs398076	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:35,48:31:83:0.578:2	0/1:21,27:32:48:0.563:2	./.	0/1:47,44:31:91:0.484:2	./.	./.	./.	0/1:50,57:31:107:0.533:2	0/1:48,44:32:92:0.478:2	./.	./.
chr14	88429690	rs17687109	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,15:31:30:0.500:2	0/1:11,12:33:23:0.522:2	./.	./.	0/1:19,26:32:45:0.578:2	0/1:18,11:31:29:0.379:2	0/1:16,22:33:38:0.579:2	0/1:27,29:33:56:0.518:2	./.	./.	./.
chr14	88431898	rs12888666	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,12:32:12:1.00:2	0/1:18,17:32:35:0.486:2	0/1:26,21:31:47:0.447:2	./.	./.	./.	./.	0/1:0,38:32:38:1.00:2	0/1:23,38:32:61:0.623:2
chr14	88431926	rs183105855	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,40:32:93:0.430:2	./.	./.	./.
chr14	88442712	rs34362748	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:32:12:0.667:2	./.	./.	0/1:29,22:31:51:0.431:2	0/1:22,20:31:42:0.476:2	0/1:26,11:28:37:0.297:2	0/1:24,18:30:42:0.429:2	./.	./.	./.
chr14	88448525	rs45568734	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:67,36:34:103:0.350:2	0/1:23,16:33:39:0.410:2	./.	./.	0/1:35,23:33:58:0.397:2	0/1:37,41:32:78:0.526:2	0/1:32,14:33:46:0.304:2	0/1:60,38:34:98:0.388:2	./.	./.	./.
chr14	88448618	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,43:33:126:0.344:2	./.
chr14	88452945	rs11552556	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,33:31:65:0.508:2	./.	./.	./.	./.
chr14	88454469	rs74337989	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,19:32:28:0.679:2	0/1:14,6:33:20:0.300:2	./.	./.	0/1:14,11:31:25:0.440:2	0/1:15,19:31:34:0.559:2	0/1:15,11:31:26:0.423:2	0/1:26,21:32:47:0.447:2	./.	./.	./.
chr14	88459434	rs111976362	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	0/1:2,4:29:6:0.667:2	./.	./.	./.	./.	./.
chr14	88459448	rs111887056	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:33:7:0.714:2	0/1:1,3:31:4:0.750:2	./.	./.	./.	0/1:4,5:30:9:0.556:2	0/1:3,6:33:9:0.667:2	./.	./.	./.	./.
chr14	88459467	rs112992946	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,9:32:13:0.692:2	0/1:3,6:32:9:0.667:2	./.	./.	./.	0/1:8,6:32:14:0.429:2	0/1:7,7:31:14:0.500:2	0/1:7,8:31:15:0.533:2	./.	./.	./.
chr14	88477413	rs6574978	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,34:32:78:0.436:2	0/1:21,25:32:46:0.543:2	0/1:0,8:32:8:1.00:2	0/1:43,53:33:96:0.552:2	0/1:0,53:32:53:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,52:32:52:1.00:2	0/1:35,34:32:69:0.493:2	0/1:0,96:33:96:1.00:2	0/1:1,67:32:68:0.985:2	0/1:0,105:33:105:1.00:2
chr14	88477882	rs3742704	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,52:34:134:0.388:2	./.	./.
chr14	88651962	rs17762463	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,89:31:190:0.468:2	0/1:115,83:31:198:0.419:2	0/1:98,98:31:196:0.500:2	0/1:95,89:31:184:0.484:2	0/1:111,82:31:193:0.425:2	./.	0/1:106,85:32:191:0.445:2	./.
chr14	88652389	rs3742692	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,24:30:25:0.960:2	0/1:0,16:32:16:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,8:28:15:0.533:2
chr14	88658675	rs138563185	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,49:32:99:0.495:2	./.
chr14	88693725	rs2277524	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,29:32:29:1.00:2	./.	0/1:28,31:32:59:0.525:2	./.	./.	./.	./.	./.	./.	0/1:32,33:31:65:0.508:2
chr14	88792816	rs3742690	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,15:30:16:0.938:2	0/1:0,13:29:13:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,21:29:21:1.00:2	0/1:0,28:28:28:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,18:28:18:1.00:2	0/1:0,32:29:32:1.00:2
chr14	88852166	rs4904448	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,8:29:19:0.421:2	./.	./.	0/1:17,16:30:33:0.485:2	0/1:11,22:30:33:0.667:2	./.	0/1:1,35:30:36:0.972:2	0/1:0,33:31:33:1.00:2	0/1:14,12:32:26:0.462:2	0/1:6,7:30:13:0.538:2	./.
chr14	88862529	rs3179969	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:40,41:32:81:0.506:2	0/1:17,23:31:42:0.575:2	./.	0/1:54,34:31:88:0.386:2	0/1:45,27:31:72:0.375:2	0/1:41,48:31:89:0.539:2	./.	./.	./.	./.	0/1:74,65:31:139:0.468:2
chr14	88935925	rs2297129	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,37:29:83:0.446:2	0/1:31,25:28:56:0.446:2	0/1:7,10:28:17:0.588:2	0/1:72,57:28:129:0.442:2	0/1:86,66:28:152:0.434:2	0/1:51,65:29:116:0.560:2	./.	./.	./.	./.	0/1:56,60:28:117:0.517:2
chr14	88938652	rs2274736	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:86,94:30:180:0.522:2	0/1:68,47:29:115:0.409:2	0/1:13,9:31:22:0.409:2	0/1:99,89:31:188:0.473:2	0/1:123,72:30:195:0.369:2	0/1:95,85:30:180:0.472:2	./.	./.	./.	./.	0/1:106,82:30:188:0.436:2
chr14	88945407	rs3825676	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:21,29:30:50:0.580:2	0/1:10,17:29:27:0.630:2	0/1:2,4:29:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	88945591	rs879932	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,3:31:8:0.375:2	0/1:5,5:32:10:0.500:2	./.	0/1:13,7:31:20:0.350:2	0/1:12,10:30:22:0.455:2	0/1:11,11:32:22:0.500:2	./.	./.	./.	./.	0/1:5,4:25:9:0.444:2
chr14	88946000	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,4:28:22:0.182:2
chr14	88946053	rs28617592	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:33:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	88946065	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:25:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	88946622	rs2401751	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,41:32:84:0.488:2	0/1:19,17:33:36:0.472:2	0/1:3,3:32:6:0.500:2	0/1:59,56:32:115:0.487:2	0/1:68,42:31:110:0.382:2	0/1:52,46:32:98:0.469:2	./.	./.	./.	./.	0/1:35,55:32:90:0.611:2
chr14	89016758	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:33:124:0.032:2	./.	./.	./.	./.	./.
chr14	89037483	rs79220223	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,11:31:126:0.087:2	./.
chr14	89038500	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:34:165:0.024:2	./.	./.
chr14	89061298	rs78648645	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,13:31:33:0.394:2	0/1:26,22:31:48:0.458:2	./.	./.	./.
chr14	89205265	rs17188228	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,38:33:74:0.514:2	0/1:28,22:31:50:0.440:2	0/1:33,34:32:67:0.507:2	./.	./.	./.	./.	./.
chr14	89305795	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:33:109:0.037:2	./.
chr14	89307227	rs150880478	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,30:33:98:0.306:2	0/1:25,27:32:52:0.519:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	89327635	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,4:33:111:0.036:2	./.	./.	./.	./.	./.	./.	./.
chr14	89343641	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:32:89:0.045:2	./.	./.	./.
chr14	89629001	rs45535535	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:87,86:30:173:0.497:2	./.	./.	./.	./.	./.	./.
chr14	90398907	rs8778	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,27:31:54:0.500:2
chr14	90429749	rs3825663	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,15:33:29:0.517:2	./.	./.	./.	./.	0/1:10,18:33:28:0.643:2	./.	./.
chr14	90429858	rs28365054	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,27:30:54:0.509:2	./.	./.	./.	./.	0/1:23,30:32:53:0.566:2	./.	./.
chr14	90451500	rs17126522	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,23:31:72:0.319:2	./.	./.	./.	./.	0/1:82,50:31:132:0.379:2	./.	./.
chr14	90651033	rs3814848	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,48:32:97:0.495:2
chr14	90729738	rs143172121	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,30:31:63:0.476:2	0/1:21,17:33:38:0.447:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	90730071	rs4811	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,124:31:127:0.976:2	0/1:0,75:31:75:1.00:2	./.	0/1:5,78:30:83:0.940:2	0/1:3,59:30:62:0.952:2	0/1:71,42:30:113:0.372:2	./.	0/1:4,66:30:70:0.943:2	0/1:87,41:31:128:0.320:2	./.	0/1:78,59:31:137:0.431:2
chr14	90745422	rs3737035	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,12:32:12:1.00:2	./.	./.	0/1:41,27:32:68:0.397:2	0/1:0,58:32:58:1.00:2	./.	0/1:47,42:34:89:0.472:2	0/1:0,55:32:55:1.00:2	0/1:69,46:32:115:0.400:2
chr14	90756760	rs3742671	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,28:32:63:0.444:2	./.	./.	./.	./.	./.	./.	./.
chr14	90764641	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,4:30:33:0.121:2	./.	./.	./.	./.	./.	./.
chr14	90767607	rs3825661	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,43:31:92:0.467:2	0/1:32,32:31:64:0.500:2	0/1:0,17:28:17:1.00:2	0/1:70,48:30:118:0.407:2	0/1:0,113:30:113:1.00:2	0/1:0,110:30:110:1.00:2	0/1:0,102:30:102:1.00:2	./.	0/1:88,66:31:154:0.429:2	0/1:0,103:30:103:1.00:2	0/1:0,93:31:93:1.00:2
chr14	90798249	rs139303187	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,19:29:36:0.528:2	./.	./.	./.
chr14	91084338	rs754247	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,7:31:16:0.438:2	./.	./.	0/1:44,35:31:79:0.443:2	./.	0/1:46,57:32:103:0.553:2	0/1:56,31:31:87:0.356:2	./.	0/1:41,31:31:72:0.431:2
chr14	91119254	rs372964197	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,12:32:31:0.387:2	./.
chr14	91123575	rs3742660	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:29:36:1.00:2	0/1:0,17:29:17:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,43:27:43:1.00:2	0/1:20,15:30:35:0.429:2	0/1:0,41:29:41:1.00:2	0/1:0,42:29:42:1.00:2	0/1:27,33:29:60:0.550:2	0/1:0,36:29:36:1.00:2	0/1:1,25:28:26:0.962:2	0/1:0,34:29:34:1.00:2
chr14	91161862	rs10146731	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,12:32:26:0.462:2	0/1:95,86:32:181:0.475:2	0/1:81,39:32:120:0.325:2	0/1:70,82:31:152:0.539:2	0/1:2,117:32:119:0.983:2	0/1:119,76:31:195:0.390:2	0/1:97,88:33:185:0.476:2	0/1:63,69:32:132:0.523:2	0/1:0,180:32:180:1.00:2
chr14	91211196	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:34:57:0.070:2	./.	./.
chr14	91636395	rs4900071	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,23:29:60:0.383:2	0/1:0,49:30:49:1.00:2	./.	0/1:39,44:30:83:0.530:2	0/1:32,34:29:66:0.515:2	./.	0/1:37,29:30:66:0.439:2	0/1:19,29:31:48:0.604:2
chr14	91636532	rs4900072	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,8:31:22:0.364:2	0/1:0,21:31:21:1.00:2	./.	0/1:9,14:32:23:0.609:2	0/1:12,13:32:25:0.520:2	./.	0/1:12,13:32:25:0.520:2	0/1:13,13:33:26:0.500:2
chr14	91655260	rs145176315	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,13:32:32:0.406:2	0/1:7,5:31:12:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	91666131	rs28481732	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:32:10:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	91666248	rs28715808	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:29:12:0.417:2	./.	./.	./.	./.	0/1:153,5:30:158:0.032:2	./.	./.	./.
chr14	91681888	rs34424078	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,10:31:33:0.303:2	./.	./.	./.
chr14	91700369	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,4:31:12:0.333:2	./.	./.	./.	./.	./.	./.	./.
chr14	91700552	rs150575263	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:8,4:31:12:0.333:2	./.	./.	./.	./.	./.	./.	0/1:10,14:30:24:0.583:2	./.	./.	./.
chr14	91739081	rs941920	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,16:32:16:1.00:2	0/1:0,7:32:7:1.00:2	./.	0/1:0,13:32:13:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,15:32:15:1.00:2	./.	0/1:0,12:32:12:1.00:2	0/1:0,10:32:10:1.00:2	0/1:10,11:30:21:0.524:2	0/1:0,9:31:9:1.00:2
chr14	91739108	rs45542736	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:10,4:33:14:0.286:2	0/1:2,4:32:6:0.667:2	./.	./.	./.	./.	./.	0/1:6,8:34:14:0.571:2	./.	./.	0/1:1,6:27:7:0.857:2
chr14	91739777	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,4:31:42:0.095:2	./.	./.	./.	./.	./.	./.
chr14	91744349	rs150512553	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,15:31:35:0.429:2	./.	0/1:28,16:30:44:0.364:2	./.	./.	./.	./.
chr14	91747832	rs139544500	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:75,36:31:111:0.324:2	0/1:31,27:31:58:0.466:2	./.	./.	./.	./.	./.	0/1:70,69:31:139:0.496:2	./.	./.	./.
chr14	91755603	rs146028766	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,54:32:115:0.474:2	./.	./.	./.	./.
chr14	91760522	rs12891713	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,87:32:192:0.455:2	./.
chr14	91773494	rs1970911	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,32:32:65:0.492:2	./.	./.
chr14	91773568	rs1970912	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,5:34:11:0.455:2	0/1:9,10:33:19:0.526:2	0/1:1,2:34:3:0.667:2	0/1:1,29:32:30:0.967:2	0/1:1,45:32:46:0.978:2	0/1:26,17:32:43:0.395:2	0/1:19,14:32:33:0.424:2	0/1:1,38:33:39:0.974:2	0/1:18,24:34:42:0.571:2	0/1:15,10:35:25:0.400:2	0/1:0,42:32:42:1.00:2
chr14	91780387	rs7160325	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,61:30:112:0.545:2
chr14	91792320	rs17127245	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,35:30:68:0.515:2	./.	0/1:22,14:30:36:0.389:2	./.
chr14	91883129	rs45437097	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:40,39:30:79:0.494:2	0/1:30,11:31:41:0.268:2	./.	0/1:55,45:30:100:0.450:2	./.	0/1:0,50:30:50:1.00:2	./.	./.	./.	./.	./.
chr14	91883967	rs3742654	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,25:30:36:0.694:2	0/1:0,40:29:40:1.00:2	./.	./.	0/1:0,41:30:41:1.00:2	0/1:0,17:31:17:1.00:2	0/1:18,18:31:36:0.500:2	0/1:0,20:31:20:1.00:2
chr14	91925107	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:31:173:0.023:2	./.	./.	./.
chr14	91931657	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,4:32:88:0.045:2	./.	./.	./.	./.	./.	./.	./.
chr14	91948043	rs17127374	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:89,94:31:183:0.514:2	0/1:42,54:30:96:0.563:2	0/1:10,9:29:19:0.474:2	./.	./.	./.	0/1:66,58:30:124:0.468:2	./.	./.	0/1:58,70:30:128:0.547:2	./.
chr14	91975909	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,4:31:13:0.308:2
chr14	92041075	rs1704614	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,137:33:139:0.986:2	0/1:0,95:33:95:1.00:2	0/1:5,16:34:21:0.762:2	0/1:103,89:33:192:0.464:2	0/1:1,192:32:193:0.995:2	0/1:109,66:32:175:0.377:2	0/1:109,89:33:198:0.449:2	0/1:0,194:33:194:1.00:2	0/1:99,96:34:195:0.492:2	0/1:0,149:33:149:1.00:2	0/1:0,153:33:154:1.00:2
chr14	92041294	rs1743066	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,52:33:54:0.981:2	0/1:0,26:32:26:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,48:32:49:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,78:32:78:1.00:2	0/1:1,75:32:77:0.987:2	0/1:1,80:33:81:0.988:2	0/1:0,54:32:54:1.00:2	0/1:0,61:32:61:1.00:2
chr14	92084004	rs1620238	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,27:33:27:1.00:2	./.	0/1:35,21:33:56:0.375:2	0/1:0,40:32:40:1.00:2	0/1:35,22:30:57:0.386:2	0/1:30,22:33:52:0.423:2	0/1:0,52:32:52:1.00:2	0/1:53,46:33:99:0.465:2	0/1:0,35:32:35:1.00:2	0/1:0,59:32:59:1.00:2
chr14	92088016	rs1296082	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,121:32:121:1.00:2	0/1:2,97:32:99:0.980:2	0/1:15,15:32:30:0.500:2	0/1:108,77:32:185:0.416:2	0/1:0,101:32:101:1.00:2	0/1:93,70:31:163:0.429:2	0/1:50,49:32:99:0.495:2	0/1:0,146:32:146:1.00:2	0/1:107,87:33:194:0.448:2	0/1:0,127:32:127:1.00:2	0/1:3,188:32:191:0.984:2
chr14	92159816	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:34:111:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	92251587	rs61990064	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,15:33:40:0.375:2	./.	./.	./.	./.
chr14	92268615	rs2402073	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:29:52:1.00:2	0/1:0,32:28:32:1.00:2	0/1:0,5:28:5:1.00:2	0/1:0,67:28:67:1.00:2	0/1:0,50:28:50:1.00:2	0/1:0,54:27:54:1.00:2	0/1:0,59:28:59:1.00:2	0/1:0,76:28:76:1.00:2	0/1:0,61:29:61:1.00:2	0/1:0,50:28:50:1.00:2	0/1:0,66:28:66:1.00:2
chr14	92280037	rs10134181	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,100:32:102:0.980:2	0/1:1,62:32:63:0.984:2	0/1:6,8:29:14:0.571:2	0/1:0,100:32:101:1.00:2	0/1:45,36:32:81:0.444:2	0/1:64,36:32:100:0.360:2	0/1:36,37:32:73:0.507:2	0/1:2,80:32:82:0.976:2	0/1:65,45:33:110:0.409:2	0/1:41,37:32:78:0.474:2	0/1:79,76:33:155:0.490:2
chr14	92343894	rs145515678	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,67:32:130:0.515:2	./.	./.	./.	./.
chr14	92347680	rs2430347	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,122:29:123:1.00:2	0/1:1,70:29:71:0.986:2	0/1:0,19:29:19:1.00:2	0/1:80,65:29:145:0.448:2	0/1:89,73:27:162:0.451:2	0/1:63,85:29:148:0.574:2	0/1:2,169:27:171:0.988:2	0/1:84,93:28:177:0.525:2	./.	0/1:0,129:29:130:1.00:2	0/1:0,115:28:115:1.00:2
chr14	92403474	rs79334845	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:80,17:12:98:0.175:2	0/1:44,16:12:60:0.267:2	./.	0/1:89,30:8:120:0.252:2	./.	0/1:107,32:9:143:0.230:2	0/1:96,33:10:130:0.256:2	0/1:100,23:10:124:0.187:2	0/1:120,32:8:153:0.211:2	0/1:86,19:12:106:0.181:2	0/1:104,26:10:130:0.200:2
chr14	92436176	rs3742719	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,20:33:45:0.444:2	./.
chr14	92441066	rs1051340	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,14:31:21:0.667:2	0/1:54,66:32:120:0.550:2	./.	0/1:76,57:31:133:0.429:2	./.	0/1:62,49:32:111:0.441:2	0/1:2,106:33:108:0.981:2	./.	0/1:55,50:31:105:0.476:2
chr14	92454633	rs11851376	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:149,4:32:153:0.026:2	./.	0/1:123,4:30:127:0.031:2	./.	./.	./.	0/1:109,4:32:113:0.035:2	./.
chr14	92454664	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:195,4:33:199:0.020:2	./.	0/1:166,6:30:172:0.035:2	./.	./.	./.	0/1:133,4:32:137:0.029:2	./.
chr14	92454709	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,6:32:126:0.048:2	./.	./.	./.	./.	./.
chr14	92470329	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:34:107:0.037:2	./.	./.
chr14	92470367	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,41:32:72:0.569:2
chr14	92471653	rs140106241	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,58:32:143:0.406:2
chr14	92488083	rs77981249	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,15:31:44:0.341:2	./.
chr14	92537354	rs12895357	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:29:4:0.750:2	0/1:25,20:29:45:0.444:2	./.	0/1:28,12:27:40:0.300:2	0/1:79,5:28:84:0.060:2	0/1:36,32:30:68:0.471:2	0/1:0,39:30:39:1.00:2	./.	0/1:21,12:28:33:0.364:2
chr14	92537379	rs12896583	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,5:32:22:0.227:2	0/1:14,7:33:21:0.333:2	0/1:1,2:34:3:0.667:2	0/1:17,6:33:23:0.261:2	0/1:7,25:31:32:0.781:2	0/1:4,19:33:23:0.826:2	0/1:41,14:31:55:0.255:2	0/1:4,26:32:30:0.867:2	0/1:4,12:33:16:0.750:2	0/1:21,10:32:31:0.323:2	0/1:5,12:31:17:0.706:2
chr14	92537387	rs12896588	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,4:32:18:0.222:2	0/1:14,3:30:17:0.176:2	./.	./.	0/1:7,15:30:22:0.682:2	0/1:4,10:32:14:0.714:2	0/1:37,10:31:47:0.213:2	0/1:4,11:31:15:0.733:2	./.	0/1:17,9:31:26:0.346:2	0/1:5,8:27:13:0.615:2
chr14	92537388	rs12896589	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,4:33:18:0.222:2	0/1:14,3:29:17:0.176:2	./.	./.	0/1:7,15:30:22:0.682:2	0/1:4,10:31:14:0.714:2	0/1:35,10:32:45:0.222:2	0/1:6,11:30:17:0.647:2	./.	0/1:16,9:29:25:0.360:2	0/1:5,8:28:13:0.615:2
chr14	92548785	rs1048755	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,36:31:81:0.444:2	./.	0/1:52,38:31:90:0.422:2	./.	0/1:58,49:31:107:0.458:2	0/1:0,83:32:83:1.00:2	./.	0/1:53,47:32:100:0.470:2
chr14	92549586	rs16999141	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:29,26:31:55:0.473:2	./.	0/1:12,18:31:30:0.600:2	./.	0/1:21,25:31:46:0.543:2	0/1:0,22:31:22:1.00:2	0/1:10,12:31:22:0.545:2	0/1:0,39:31:39:1.00:2
chr14	92559678	rs4904834	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:33:11:1.00:2	0/1:49,75:33:124:0.605:2	./.	0/1:44,40:32:84:0.476:2	./.	0/1:70,30:32:100:0.300:2	0/1:0,105:33:105:1.00:2	0/1:56,35:32:91:0.385:2	0/1:0,95:33:95:1.00:2
chr14	92572927	rs3814834	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,7:29:25:0.280:2	0/1:8,10:29:18:0.556:2
chr14	92583914	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:161,5:34:166:0.030:2	./.	./.	./.	./.	0/1:171,4:33:175:0.023:2	./.
chr14	92583927	rs149760197	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,68:32:154:0.442:2	./.
chr14	92588002	rs3818263	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,7:28:23:0.304:2	./.	0/1:14,7:28:21:0.333:2	./.	0/1:27,7:30:34:0.206:2	0/1:25,10:27:35:0.286:2	./.
chr14	92600419	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:181,7:23:188:0.037:2	./.	./.	./.	./.	./.	./.
chr14	92792255	rs941646	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:32:33:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,41:33:41:1.00:2	0/1:0,47:33:47:1.00:2	0/1:0,47:33:47:1.00:2
chr14	92908512	rs75348968	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:32:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	92909073	rs941650	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:99,60:30:159:0.377:2	0/1:40,45:30:85:0.529:2	0/1:0,27:31:27:1.00:2	0/1:0,189:30:189:1.00:2	0/1:0,187:29:187:1.00:2	0/1:108,87:30:195:0.446:2	0/1:1,188:30:189:0.995:2	0/1:104,87:30:191:0.455:2	0/1:114,78:31:192:0.406:2	0/1:0,148:30:148:1.00:2	0/1:0,175:30:175:1.00:2
chr14	92920371	rs7144273	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,116:31:116:1.00:2	0/1:0,79:31:79:1.00:2	0/1:9,12:31:21:0.571:2	./.	./.	0/1:88,70:30:159:0.443:2	./.	0/1:3,185:30:188:0.984:2	0/1:0,150:32:150:1.00:2	0/1:61,73:31:134:0.545:2	./.
chr14	92922900	rs77671856	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:30:3:1.00:2	0/1:10,9:30:19:0.474:2	0/1:0,24:28:24:1.00:2	./.	0/1:10,7:30:17:0.412:2	./.	./.	./.	0/1:6,11:30:17:0.647:2
chr14	92958522	rs45587635	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,41:32:66:0.621:2	./.	./.	./.	./.	./.
chr14	93118038	rs3829947	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,83:28:84:1.00:2	0/1:0,41:27:41:1.00:2	0/1:16,8:28:24:0.333:2	./.	0/1:0,152:27:152:1.00:2	0/1:76,47:26:123:0.382:2	0/1:59,65:28:124:0.524:2	0/1:2,153:28:155:0.987:2	0/1:1,124:28:125:0.992:2	0/1:0,104:27:104:1.00:2	0/1:0,95:28:95:1.00:2
chr14	93118114	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:32:172:0.023:2	./.
chr14	93118198	rs3814830	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,33:27:62:0.532:2	0/1:24,28:26:52:0.538:2	0/1:22,20:27:42:0.476:2	0/1:33,32:27:65:0.492:2	./.	./.	./.
chr14	93118229	rs117068593	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,7:28:16:0.438:2	./.	./.	./.	0/1:9,6:31:15:0.400:2	0/1:12,8:32:20:0.400:2	./.	0/1:12,12:30:24:0.500:2	./.	./.	0/1:2,7:26:9:0.778:2
chr14	93118469	rs139103248	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,4:33:10:0.400:2	./.	./.	./.	./.
chr14	93118668	rs3742717	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,44:31:88:0.500:2	0/1:25,38:30:63:0.603:2	0/1:39,37:31:76:0.487:2	0/1:62,36:31:98:0.367:2	./.	./.	./.
chr14	93118669	rs3742716	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,9:31:12:0.818:2	0/1:1,72:31:73:0.986:2	./.	./.	./.	./.	./.	./.	./.
chr14	93170993	rs9791	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,59:31:112:0.527:2	./.	0/1:0,116:32:116:1.00:2	./.	0/1:49,43:31:92:0.467:2
chr14	93178191	rs1951708	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:31:53:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,87:32:87:1.00:2
chr14	93178224	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:31:75:0.053:2	./.
chr14	93180161	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:31:85:0.047:2	./.
chr14	93180727	rs59223493	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,18:29:64:0.281:2	./.	./.	./.
chr14	93199080	rs2236264	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:4,61:32:65:0.938:2	0/1:0,26:32:26:1.00:2	./.	./.	0/1:47,39:31:86:0.453:2	./.	./.	./.	./.	0/1:1,59:31:60:0.983:2	0/1:60,41:31:101:0.406:2
chr14	93263878	rs140027628	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,28:30:61:0.459:2	./.	./.	./.	./.	./.	./.	./.
chr14	93264237	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:30:55:0.073:2	./.	./.	./.	./.
chr14	93275714	rs34515753	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,15:31:47:0.319:2	./.
chr14	93276654	rs1040835	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:33:60:1.00:2	0/1:1,38:33:39:0.974:2	0/1:1,5:32:6:0.833:2	0/1:38,49:33:87:0.563:2	0/1:27,25:32:52:0.481:2	0/1:0,84:32:84:1.00:2	./.	0/1:46,55:32:101:0.545:2	0/1:0,83:34:83:1.00:2	0/1:0,74:33:75:1.00:2	0/1:1,101:33:102:0.990:2
chr14	93282610	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	93282701	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:33:84:0.048:2
chr14	93399101	rs729940	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:31:7:0.857:2	./.	0/1:10,14:28:24:0.583:2	./.	0/1:10,7:30:17:0.412:2	./.	./.	./.	0/1:7,8:31:15:0.533:2
chr14	93401178	rs941581	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:32:64:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,82:33:82:1.00:2	0/1:0,99:32:99:1.00:2	0/1:68,52:32:120:0.433:2	0/1:0,105:32:105:1.00:2	0/1:0,101:32:101:1.00:2	0/1:68,46:33:114:0.404:2	0/1:42,35:33:77:0.455:2	0/1:0,73:31:73:1.00:2
chr14	93412743	rs2295394	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,39:31:77:0.506:2	0/1:18,19:30:37:0.514:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	93712317	rs143877217	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,27:31:58:0.466:2	./.	./.	./.	./.
chr14	93760625	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,6:28:102:0.059:2	./.	./.	./.
chr14	93760714	rs374507319	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,47:32:101:0.465:2	./.	./.
chr14	93760945	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,4:29:48:0.083:2	./.	./.	./.	./.	./.	./.
chr14	93760997	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,4:29:68:0.059:2	./.	./.	./.	./.	./.	./.
chr14	93943998	rs61992606	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:106,87:32:193:0.451:2	./.	0/1:132,67:31:199:0.337:2	./.	./.	./.	0/1:118,57:33:175:0.326:2	./.
chr14	93994954	rs28420706	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,62:32:107:0.579:2	0/1:29,34:31:63:0.540:2	0/1:0,16:31:16:1.00:2	0/1:64,61:32:125:0.488:2	0/1:44,50:31:94:0.532:2	0/1:60,50:31:110:0.455:2	0/1:1,79:31:80:0.988:2	0/1:3,129:32:132:0.977:2	0/1:0,121:32:121:1.00:2	0/1:50,53:32:103:0.515:2	0/1:65,66:32:132:0.504:2
chr14	93998888	rs74859443	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,32:33:56:0.571:2	./.	./.	./.	./.	./.	./.	./.
chr14	94007075	rs1951716	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,17:28:33:0.548:2	0/1:2,13:31:15:0.867:2	0/1:0,5:30:5:1.00:2	0/1:0,47:29:48:1.00:2	0/1:21,11:28:32:0.344:2	0/1:12,19:30:31:0.613:2	0/1:0,23:28:23:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,54:29:54:1.00:2	0/1:11,13:28:24:0.542:2	0/1:25,18:27:43:0.419:2
chr14	94088369	rs28670114	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,6:33:40:0.150:2	0/1:14,21:33:35:0.600:2	0/1:26,12:33:38:0.316:2	0/1:25,20:31:45:0.444:2	0/1:34,35:33:69:0.507:2	./.	0/1:30,26:32:56:0.464:2
chr14	94088587	rs4905081	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,34:29:53:0.642:2	0/1:17,19:31:36:0.528:2	0/1:0,6:31:6:1.00:2	0/1:3,65:29:68:0.956:2	./.	0/1:47,29:29:76:0.382:2	0/1:60,43:30:103:0.417:2	0/1:49,44:30:94:0.473:2	0/1:50,35:30:85:0.412:2	0/1:32,47:29:79:0.595:2	./.
chr14	94089118	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:33:84:0.048:2	./.
chr14	94103602	rs4905082	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,46:32:89:0.517:2	0/1:26,26:32:52:0.500:2	0/1:0,10:32:10:1.00:2	0/1:0,106:32:106:1.00:2	0/1:60,61:31:121:0.504:2	0/1:0,105:31:105:1.00:2	0/1:3,107:32:110:0.973:2	0/1:0,130:32:130:1.00:2	0/1:0,102:33:102:1.00:2	0/1:64,44:32:108:0.407:2	0/1:51,36:33:87:0.414:2
chr14	94107588	rs148566249	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:33:148:0.027:2	./.	./.	./.	./.
chr14	94120117	rs200892168	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,8:15:33:0.242:2	./.	./.
chr14	94121618	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,4:34:60:0.067:2	./.	./.	./.	./.	./.	./.	./.
chr14	94187832	rs1887197	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,26:32:55:0.473:2	0/1:25,15:32:40:0.375:2	0/1:0,4:31:4:1.00:2	0/1:0,92:31:92:1.00:2	0/1:40,45:31:85:0.529:2	0/1:44,39:31:83:0.470:2	0/1:1,101:31:102:0.990:2	0/1:0,95:32:95:1.00:2	0/1:53,50:33:103:0.485:2	0/1:45,48:32:93:0.516:2	0/1:59,41:32:100:0.410:2
chr14	94245649	rs4905087	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,12:30:18:0.667:2	0/1:5,6:29:11:0.545:2	0/1:0,2:30:2:1.00:2	0/1:13,15:28:28:0.536:2	0/1:0,46:29:46:1.00:2	0/1:15,6:30:21:0.286:2	0/1:0,46:29:46:1.00:2	0/1:0,54:29:54:1.00:2	0/1:0,30:30:30:1.00:2	0/1:17,5:27:22:0.227:2	0/1:0,19:29:19:1.00:2
chr14	94245652	rs4900195	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:6,12:32:18:0.667:2	0/1:5,6:31:11:0.545:2	0/1:0,2:32:2:1.00:2	./.	0/1:0,46:31:46:1.00:2	./.	0/1:33,13:30:46:0.283:2	0/1:33,21:32:54:0.389:2	0/1:16,14:31:30:0.467:2	0/1:17,5:30:22:0.227:2	0/1:16,4:30:20:0.200:2
chr14	94391699	rs10141024	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:30:25:1.00:2	0/1:0,9:31:9:1.00:2	0/1:3,4:28:7:0.571:2	0/1:0,31:31:31:1.00:2	0/1:19,7:30:26:0.269:2	0/1:0,23:30:23:1.00:2	0/1:0,31:32:31:1.00:2	0/1:32,12:32:44:0.273:2	./.	0/1:1,24:31:25:0.960:2	0/1:17,16:32:33:0.485:2
chr14	94394715	rs11554726	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,14:31:39:0.359:2	./.	./.
chr14	94401007	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,4:32:44:0.091:2	./.	./.	./.	./.	./.	./.	./.
chr14	94405871	rs10873442	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,5:26:5:1.00:2	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.
chr14	94417421	rs7147919	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:31:70:1.00:2	0/1:0,53:32:53:1.00:2	0/1:8,5:31:13:0.385:2	0/1:0,103:30:103:1.00:2	0/1:1,109:31:111:0.991:2	0/1:2,114:30:116:0.983:2	0/1:3,141:31:144:0.979:2	0/1:76,47:30:123:0.382:2	0/1:78,51:32:129:0.395:2	0/1:0,73:31:73:1.00:2	0/1:1,108:31:109:0.991:2
chr14	94417531	rs11555542	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:13,19:26:32:0.594:2	0/1:8,13:28:21:0.619:2	./.	0/1:28,17:28:45:0.378:2	./.	0/1:19,13:26:32:0.406:2	./.	0/1:31,26:28:57:0.456:2	./.	./.	./.
chr14	94417541	rs4277287	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:30:30:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,43:30:43:1.00:2	0/1:18,8:31:26:0.308:2	0/1:0,24:31:24:1.00:2	0/1:0,32:30:32:1.00:2
chr14	94417586	rs4483793	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,14:31:14:1.00:2	0/1:0,14:32:14:1.00:2	./.	0/1:0,30:31:30:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,13:32:13:1.00:2	0/1:8,7:31:15:0.467:2	0/1:8,7:31:15:0.467:2	0/1:0,13:30:13:1.00:2	0/1:1,11:30:12:0.917:2
chr14	94464489	rs10142728	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,16:31:38:0.421:2	./.	./.	0/1:23,14:30:37:0.378:2	./.	./.	./.
chr14	94467498	rs144080241	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,19:30:51:0.373:2	0/1:34,18:32:52:0.346:2
chr14	94467549	rs60333700	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,41:31:100:0.410:2	./.	./.	0/1:71,59:31:130:0.454:2	./.	./.	./.
chr14	94510964	rs2273226	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,12:30:31:0.387:2	0/1:18,13:28:31:0.419:2	0/1:0,10:27:10:1.00:2	0/1:42,46:29:88:0.523:2	0/1:3,87:29:90:0.967:2	./.	0/1:65,60:30:125:0.480:2	0/1:53,39:29:92:0.424:2	0/1:41,43:31:84:0.512:2	0/1:36,20:29:56:0.357:2	./.
chr14	94512109	rs17129442	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,65:31:148:0.439:2	./.	./.	./.	./.	./.	./.
chr14	94524216	rs1056810	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,24:28:43:0.558:2	0/1:18,7:28:25:0.280:2	./.	0/1:8,19:30:27:0.704:2	0/1:12,13:28:25:0.520:2	./.	0/1:18,23:30:41:0.561:2	0/1:25,26:29:51:0.510:2	0/1:20,25:30:45:0.556:2	./.	./.
chr14	94545640	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,3:31:30:0.100:2	./.	./.	./.	./.	./.	./.
chr14	94563265	rs79237142	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,37:33:76:0.487:2	./.	./.	./.	./.	./.	./.	./.
chr14	94582821	rs2227974	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,51:31:105:0.486:2	./.	./.	./.	./.	./.	./.
chr14	94642417	rs34520961	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,23:28:83:0.277:2	./.	0/1:65,44:30:109:0.404:2	0/1:51,33:30:84:0.393:2	./.
chr14	94722927	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:33:53:0.075:2	./.	./.
chr14	94725677	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:32:29:0.138:2	./.	./.	./.	./.
chr14	94750486	rs2232710	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,20:28:37:0.541:2	./.	./.	./.	./.	./.
chr14	94754804	rs2232708	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,67:33:134:0.500:2	./.
chr14	94756278	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,4:32:61:0.066:2	./.	./.	./.	./.	./.	./.	./.
chr14	94756450	rs2232700	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,45:31:47:0.957:2	./.	./.	./.	./.	./.
chr14	94756669	rs2232698	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,35:32:58:0.603:2	./.
chr14	94756750	rs941591	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,46:29:47:0.979:2	./.	./.	./.	./.	./.
chr14	94756794	rs941590	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:33:13:0.385:2	./.	./.	0/1:0,64:31:64:1.00:2	./.	./.	./.	0/1:26,24:32:50:0.480:2	./.
chr14	94772429	rs2228543	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,52:31:103:0.505:2	0/1:45,21:31:66:0.318:2	./.	./.	./.	0/1:55,38:31:93:0.409:2	./.	./.	./.	./.	./.
chr14	94772504	rs1042394	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:32:10:0.500:2	./.	0/1:38,54:32:93:0.587:2	./.	./.	0/1:5,86:32:91:0.945:2	0/1:37,50:33:87:0.575:2	./.	./.
chr14	94776219	rs2228542	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,9:32:14:0.643:2	./.	0/1:92,67:32:159:0.421:2	./.	./.	0/1:0,141:32:141:1.00:2	0/1:56,47:34:103:0.456:2	./.	./.
chr14	94776221	rs2228541	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,22:30:61:0.361:2	0/1:15,28:31:43:0.651:2	0/1:9,4:31:13:0.308:2	0/1:0,98:30:98:1.00:2	0/1:69,88:29:157:0.561:2	0/1:76,44:29:120:0.367:2	0/1:0,137:30:137:1.00:2	./.	0/1:49,54:32:103:0.524:2	0/1:0,89:29:89:1.00:2	0/1:0,105:29:105:1.00:2
chr14	94780608	rs3748320	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,30:31:55:0.545:2	./.	./.	0/1:0,69:31:69:1.00:2	./.	./.	./.
chr14	94780838	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:34:111:0.036:2	./.	./.
chr14	94844843	rs1303	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,94:32:180:0.522:2	0/1:3,115:32:118:0.975:2	0/1:3,179:31:182:0.984:2	0/1:1,168:33:169:0.994:2	0/1:1,152:32:155:0.993:2	./.
chr14	94847262	rs17580	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:87,80:31:167:0.479:2	0/1:64,67:31:131:0.511:2	./.	./.	0/1:78,70:30:148:0.473:2	./.	./.	./.	./.	./.	0/1:1,154:31:155:0.994:2
chr14	94847415	rs6647	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,51:30:127:0.405:2	./.	./.	./.	./.	./.
chr14	94849151	rs20546	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,23:32:66:0.348:2	0/1:29,35:33:64:0.547:2	./.	./.
chr14	94849201	rs709932	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,18:31:40:0.450:2	0/1:1,43:31:44:0.977:2	0/1:27,33:30:60:0.550:2	0/1:35,26:31:61:0.426:2	0/1:21,28:32:49:0.571:2	./.
chr14	94912799	rs12888805	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,38:32:79:0.481:2	0/1:30,32:32:62:0.516:2	0/1:4,11:31:15:0.733:2	0/1:60,54:32:114:0.474:2	./.	./.	0/1:5,111:32:116:0.957:2	0/1:59,50:32:109:0.459:2	0/1:78,65:33:143:0.455:2	./.	0/1:68,63:32:131:0.481:2
chr14	94912896	rs1885137	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,39:33:89:0.438:2	0/1:34,28:33:62:0.452:2	0/1:2,7:33:9:0.778:2	0/1:76,57:33:133:0.429:2	./.	./.	0/1:2,102:33:104:0.981:2	0/1:54,59:32:113:0.522:2	0/1:67,58:33:127:0.464:2	./.	0/1:67,56:33:123:0.455:2
chr14	94929504	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,5:31:197:0.025:2	./.	./.	./.	./.	./.	./.
chr14	94929541	rs2224418	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,193:30:193:1.00:2	0/1:6,136:31:143:0.958:2	0/1:0,25:31:25:1.00:2	0/1:0,193:31:193:1.00:2	0/1:107,89:30:196:0.454:2	0/1:2,183:31:186:0.989:2	0/1:1,188:31:190:0.995:2	0/1:0,186:30:187:1.00:2	0/1:1,178:31:179:0.994:2	0/1:1,185:31:187:0.995:2	0/1:0,177:30:179:1.00:2
chr14	94931105	rs11628722	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:31:33:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,49:32:49:1.00:2	0/1:6,8:33:14:0.571:2	0/1:0,49:31:49:1.00:2	0/1:0,27:33:27:1.00:2	0/1:1,41:32:43:0.976:2	0/1:1,49:33:50:0.980:2	0/1:0,33:33:33:1.00:2	0/1:0,76:31:76:1.00:2
chr14	94933473	rs28618118	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:77,60:30:137:0.438:2	0/1:57,40:31:97:0.412:2	./.	0/1:114,71:29:186:0.384:2	0/1:98,91:29:189:0.481:2	0/1:105,86:29:191:0.450:2	./.	0/1:103,89:30:192:0.464:2	0/1:91,98:30:189:0.519:2	0/1:66,80:30:146:0.548:2	0/1:81,80:30:161:0.497:2
chr14	94933640	rs28583900	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,46:31:85:0.541:2	0/1:29,23:32:52:0.442:2	./.	0/1:62,55:32:117:0.470:2	0/1:80,57:32:137:0.416:2	0/1:74,46:31:120:0.383:2	./.	0/1:81,63:31:145:0.438:2	0/1:69,61:32:130:0.469:2	0/1:54,43:32:97:0.443:2	0/1:51,69:32:120:0.575:2
chr14	94933695	rs17090921	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,37:33:62:0.597:2	0/1:20,15:33:35:0.429:2	./.	0/1:29,24:32:53:0.453:2	0/1:39,24:32:63:0.381:2	0/1:41,16:31:57:0.281:2	./.	0/1:44,23:31:67:0.343:2	0/1:42,35:33:77:0.455:2	0/1:37,19:32:56:0.339:2	0/1:39,29:33:68:0.426:2
chr14	94933709	rs6575433	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,12:32:44:0.273:2	0/1:13,13:32:26:0.500:2	0/1:0,2:32:2:1.00:2	0/1:20,21:32:41:0.512:2	./.	0/1:15,35:31:50:0.700:2	0/1:1,37:31:38:0.974:2	0/1:20,35:31:55:0.636:2	0/1:31,30:32:61:0.492:2	0/1:14,23:31:37:0.622:2	0/1:27,29:31:56:0.518:2
chr14	94935566	rs4900231	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,28:32:71:0.394:2	0/1:21,20:31:41:0.488:2	./.	./.	./.	./.	./.	./.	0/1:42,40:31:82:0.488:2	0/1:36,35:32:71:0.493:2	./.
chr14	94935901	rs12879019	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,37:29:61:0.607:2	0/1:24,16:29:40:0.400:2	0/1:0,5:31:5:1.00:2	0/1:32,42:29:74:0.568:2	./.	./.	0/1:37,20:28:57:0.351:2	0/1:38,27:27:65:0.415:2	./.	./.	0/1:33,34:27:67:0.507:2
chr14	94936062	rs45438596	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,29:30:58:0.500:2	./.	./.	./.	./.	./.
chr14	94936110	rs45438398	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,40:32:86:0.465:2	./.	./.	./.	0/1:26,43:32:69:0.623:2	./.
chr14	94953739	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:121,4:31:125:0.032:2	./.	./.	./.	./.	./.	./.
chr14	95029852	rs5508	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:27:9:0.556:2	./.	0/1:44,46:32:90:0.511:2	0/1:29,49:31:78:0.628:2	./.	./.	./.	./.	./.
chr14	95030104	rs144981852	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,10:30:34:0.294:2	./.	./.	./.	./.	./.
chr14	95033356	rs5510	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,31:32:79:0.392:2	0/1:41,30:31:71:0.423:2	0/1:11,7:32:18:0.389:2	0/1:57,49:32:106:0.462:2	./.	./.	./.	0/1:68,47:32:115:0.409:2	0/1:0,94:32:94:1.00:2	0/1:52,48:32:100:0.480:2	./.
chr14	95053849	rs6113	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,10:30:31:0.323:2	0/1:29,8:30:37:0.216:2	./.	./.	./.	./.	./.
chr14	95053863	rs6118	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,9:30:29:0.310:2	0/1:26,7:26:33:0.212:2	./.	./.	./.	./.	./.
chr14	95053890	rs6115	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,36:31:36:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,40:32:40:1.00:2	0/1:29,23:31:52:0.442:2	./.	0/1:20,22:31:42:0.524:2	0/1:0,41:31:41:1.00:2
chr14	95053891	rs6111	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,8:26:30:0.267:2	./.	./.	./.	./.	./.
chr14	95054012	rs6119	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,5:31:23:0.217:2	0/1:9,9:31:18:0.500:2	./.	./.	./.	./.	./.
chr14	95054176	rs6112	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,159:32:159:1.00:2	0/1:1,182:32:183:0.995:2	0/1:0,177:32:177:1.00:2	0/1:113,85:32:198:0.429:2	0/1:105,92:32:197:0.467:2	./.	0/1:76,70:33:146:0.479:2	0/1:1,185:32:186:0.995:2
chr14	95058462	rs6116	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:29,30:30:59:0.508:2	0/1:15,15:32:30:0.500:2	./.	./.	0/1:38,31:30:69:0.449:2	./.	0/1:34,48:32:82:0.585:2	0/1:52,30:32:82:0.366:2	0/1:34,31:33:65:0.477:2	0/1:28,24:32:52:0.462:2	0/1:0,62:31:62:1.00:2
chr14	95080803	rs4934	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,16:31:16:1.00:2	0/1:0,15:32:15:1.00:2	./.	./.	0/1:0,7:29:7:1.00:2	./.	0/1:0,12:30:12:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,14:32:14:1.00:2	0/1:10,9:32:19:0.474:2	./.
chr14	95081081	rs17826465	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,5:28:7:0.714:2	0/1:2,38:33:40:0.950:2	./.	0/1:25,22:32:47:0.468:2	./.	./.	./.	./.	./.
chr14	95593024	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:33:70:0.057:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	95596457	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:34:56:0.071:2	./.
chr14	95660242	rs1128468	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,19:30:31:0.613:2	./.	./.	./.	./.	./.
chr14	95669334	rs12147696	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,24:33:50:0.480:2	./.	./.	./.
chr14	95675791	rs118150470	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,26:31:85:0.306:2	./.	./.	./.	./.	./.
chr14	95690187	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:27:66:0.061:2	./.	./.	./.
chr14	95884323	rs12434757	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,56:27:61:0.982:2	0/1:0,36:27:37:1.00:2	0/1:6,5:29:11:0.455:2	0/1:40,51:27:91:0.560:2	0/1:0,73:27:76:1.00:2	0/1:25,36:27:63:0.590:2	0/1:2,74:27:76:0.974:2	0/1:0,89:28:91:1.00:2	0/1:0,70:28:70:1.00:2	0/1:33,17:26:51:0.340:2	0/1:1,45:26:48:0.978:2
chr14	95906023	rs17828632	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,27:33:57:0.474:2	0/1:19,28:33:47:0.596:2	./.
chr14	95906321	rs9671369	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:8,15:30:23:0.652:2	0/1:11,5:32:16:0.313:2	0/1:3,8:32:11:0.727:2	0/1:16,23:32:40:0.590:2	0/1:20,24:30:44:0.545:2	0/1:0,43:30:43:1.00:2	./.	0/1:16,21:31:37:0.568:2	0/1:9,26:32:35:0.743:2	./.	0/1:13,12:31:25:0.480:2
chr14	95910933	rs9919918	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:28:8:0.375:2	0/1:1,50:29:51:0.980:2	0/1:31,18:29:49:0.367:2	0/1:26,17:30:43:0.395:2	./.	0/1:41,15:27:56:0.268:2	./.	./.	./.
chr14	95912426	rs17092283	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,21:28:57:0.368:2	./.	./.	./.	./.	./.	./.	./.
chr14	95916397	rs149713915	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,42:30:84:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr14	95918625	rs4905318	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,23:30:57:0.418:2	0/1:15,22:29:38:0.595:2	./.	0/1:35,34:30:69:0.493:2	0/1:55,41:30:96:0.427:2	0/1:0,73:29:73:1.00:2	./.	0/1:44,44:30:88:0.500:2	0/1:38,25:30:64:0.397:2	0/1:24,31:30:56:0.564:2	0/1:20,22:28:42:0.524:2
chr14	95921741	rs4905324	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:7,19:29:26:0.731:2	0/1:6,4:31:10:0.400:2	0/1:4,3:29:7:0.429:2	0/1:21,27:30:48:0.563:2	0/1:32,31:30:63:0.492:2	0/1:0,35:29:35:1.00:2	./.	0/1:25,11:29:36:0.306:2	0/1:17,21:30:38:0.553:2	0/1:13,10:29:23:0.435:2	0/1:14,11:31:25:0.440:2
chr14	95923670	rs2024863	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,21:32:37:0.568:2	0/1:11,11:32:22:0.500:2	./.	0/1:0,45:31:45:1.00:2	0/1:34,30:31:64:0.469:2	0/1:0,68:32:68:1.00:2	./.	0/1:30,35:31:65:0.538:2	0/1:20,33:33:53:0.623:2	0/1:24,16:30:40:0.400:2	0/1:24,23:33:47:0.489:2
chr14	95934295	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:33:36:0.111:2	./.
chr14	96010424	rs11628901	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,9:31:30:0.300:2	0/1:11,6:30:17:0.353:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,14:28:25:0.560:2
chr14	96129805	rs142736022	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	96129955	rs8015466	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,8:32:16:0.500:2	0/1:13,6:33:19:0.316:2	./.	0/1:14,19:33:33:0.576:2	0/1:20,17:32:37:0.459:2	0/1:13,16:32:29:0.552:2	./.	./.	./.	./.	0/1:11,15:33:26:0.577:2
chr14	96131432	rs1743491	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:32:56:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,70:32:71:1.00:2
chr14	96134589	rs7151040	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:134,58:31:192:0.302:2	./.	./.	./.	./.	./.	./.
chr14	96136794	rs2249778	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:33:6:1.00:2	./.	0/1:17,27:31:44:0.614:2	0/1:24,29:32:53:0.547:2	./.	./.	./.	./.	0/1:29,32:32:61:0.525:2
chr14	96157187	rs1064017	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,48:32:82:0.585:2	0/1:23,16:32:40:0.410:2	0/1:11,6:31:17:0.353:2	0/1:43,39:32:82:0.476:2	0/1:46,47:32:93:0.505:2	./.	0/1:62,57:32:119:0.479:2	0/1:59,55:32:115:0.482:2	0/1:64,40:33:104:0.385:2	./.	0/1:49,41:32:90:0.456:2
chr14	96157675	rs75169034	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,10:14:60:0.167:2	./.	./.	./.	./.	./.	./.
chr14	96157679	rs34993719	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,22:29:42:0.524:2	0/1:11,8:31:19:0.421:2	./.	./.	0/1:31,28:29:59:0.475:2	0/1:27,25:28:52:0.481:2	0/1:24,25:28:49:0.510:2	0/1:38,36:28:74:0.486:2	0/1:32,22:30:54:0.407:2	./.	0/1:35,11:28:46:0.239:2
chr14	96703484	rs1046248	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,41:32:104:0.394:2	./.	./.	./.	0/1:69,42:32:111:0.378:2	./.
chr14	96707360	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.	./.	./.	./.	./.	./.
chr14	96707427	rs201458327	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,41:32:93:0.441:2	0/1:24,34:31:58:0.586:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	96707457	rs5224	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:30:67:1.00:2	0/1:0,46:30:46:1.00:2	0/1:4,5:31:9:0.556:2	0/1:0,81:29:81:1.00:2	0/1:0,84:30:84:1.00:2	0/1:2,82:31:84:0.976:2	0/1:0,108:30:108:1.00:2	0/1:0,72:30:72:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,63:31:63:1.00:2
chr14	96730142	rs2071084	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:29:47:1.00:2	0/1:0,32:29:32:1.00:2	0/1:1,4:31:5:0.800:2	0/1:0,49:29:49:1.00:2	0/1:1,47:29:48:0.979:2	0/1:0,54:30:54:1.00:2	0/1:0,54:30:54:1.00:2	0/1:2,73:30:75:0.973:2	0/1:0,66:31:66:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,85:30:85:1.00:2
chr14	96752161	rs151219519	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,78:29:173:0.451:2	./.	./.	./.	./.	./.	0/1:100,80:30:180:0.444:2
chr14	96757973	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,4:32:53:0.075:2	./.	./.	./.	./.	./.	./.
chr14	96771959	rs2289622	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:33:26:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,4:34:4:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,39:31:39:1.00:2
chr14	96777468	rs3759601	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:93,79:33:173:0.459:2	0/1:57,37:33:94:0.394:2	0/1:0,27:33:27:1.00:2	0/1:0,187:33:187:1.00:2	0/1:123,73:32:196:0.372:2	0/1:95,101:33:196:0.515:2	0/1:4,185:33:189:0.979:2	0/1:3,183:33:186:0.984:2	0/1:118,77:34:196:0.395:2	0/1:97,80:33:177:0.452:2	0/1:103,86:33:189:0.455:2
chr14	96781912	rs9323945	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,104:32:104:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,141:33:141:1.00:2	0/1:0,103:32:103:1.00:2	0/1:0,141:31:141:1.00:2	0/1:0,124:31:124:1.00:2	0/1:0,174:32:174:1.00:2	0/1:1,140:32:141:0.993:2	0/1:0,130:32:130:1.00:2	0/1:0,135:32:135:1.00:2
chr14	96788549	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:122,4:32:126:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr14	96794725	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,3:32:47:0.064:2	./.
chr14	96795029	rs61736675	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,23:30:46:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr14	96797724	rs1822372	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,38:32:38:1.00:2	0/1:2,32:31:34:0.941:2	0/1:0,50:31:50:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,57:33:57:1.00:2
chr14	96829290	rs12434329	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,27:31:59:0.458:2	0/1:36,12:32:48:0.250:2	0/1:0,16:31:16:1.00:2	0/1:0,101:31:101:1.00:2	0/1:85,43:31:128:0.336:2	0/1:0,82:30:82:1.00:2	0/1:0,97:30:97:1.00:2	0/1:0,125:30:125:1.00:2	0/1:93,51:32:145:0.354:2	0/1:0,49:31:49:1.00:2	0/1:62,28:31:90:0.311:2
chr14	96871104	rs2275554	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,42:32:93:0.452:2	0/1:28,30:32:58:0.517:2	./.	0/1:58,52:31:110:0.473:2	0/1:57,43:31:100:0.430:2	./.	0/1:43,51:32:94:0.543:2	0/1:68,57:32:125:0.456:2	0/1:81,59:32:140:0.421:2	0/1:57,47:32:104:0.452:2	0/1:55,77:31:132:0.583:2
chr14	96916228	rs10444759	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:1,18:28:19:0.947:2	0/1:0,10:31:10:1.00:2	0/1:0,2:27:2:1.00:2	./.	./.	0/1:7,16:26:23:0.696:2	0/1:0,15:29:15:1.00:2	./.	0/1:4,9:31:13:0.692:2	./.	0/1:13,10:27:23:0.435:2
chr14	96922752	rs2369679	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,110:33:110:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,121:32:121:1.00:2	0/1:0,76:32:76:1.00:2	0/1:42,55:31:97:0.567:2	0/1:0,103:32:103:1.00:2	0/1:0,128:33:128:1.00:2	0/1:1,112:33:113:0.991:2	0/1:0,95:33:95:1.00:2	0/1:0,107:32:107:1.00:2
chr14	96939108	rs60920648	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,30:33:89:0.337:2	0/1:31,20:32:51:0.392:2	./.	./.	./.	./.	./.	./.
chr14	97299853	rs2145635	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,10:28:30:0.333:2	0/1:14,23:27:37:0.622:2	./.	./.	0/1:19,18:28:37:0.486:2
chr14	97312474	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:32:129:0.031:2	./.	./.	./.
chr14	97319180	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:32:60:0.067:2	./.
chr14	97321689	rs2230532	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,20:32:48:0.417:2	0/1:16,19:31:35:0.543:2	0/1:6,5:31:11:0.455:2	0/1:34,24:31:58:0.414:2	./.	0/1:29,31:31:60:0.517:2	./.	0/1:29,36:31:65:0.554:2	0/1:35,18:32:53:0.340:2	0/1:27,20:30:47:0.426:2	./.
chr14	97327015	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:32:184:0.022:2
chr14	97410013	rs17094651	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,87:28:163:0.534:2	./.	./.	./.	./.	./.	./.	./.
chr14	99182535	rs17097718	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,37:32:66:0.561:2	0/1:23,27:32:50:0.540:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	99182626	rs4905757	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,57:31:104:0.548:2	./.	./.
chr14	99642360	rs1152783	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	./.	0/1:1,3:32:4:0.750:2	0/1:2,6:32:8:0.750:2	./.	./.	0/1:3,4:31:7:0.571:2	./.	./.
chr14	99876505	rs1047351	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,8:33:11:0.727:2	0/1:37,31:33:68:0.456:2	./.	0/1:43,43:32:86:0.500:2	./.	0/1:38,39:32:77:0.506:2	0/1:42,22:33:64:0.344:2	0/1:17,17:33:34:0.500:2	0/1:28,15:33:43:0.349:2
chr14	99976620	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	./.	./.	./.	./.	./.
chr14	99976944	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,8:28:12:0.667:2	./.
chr14	100129327	rs34890784	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,61:31:121:0.504:2	./.	./.	./.	./.	./.
chr14	100192943	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,6:28:77:0.078:2	./.	./.	./.
chr14	100192958	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,6:28:60:0.100:2	./.	./.	./.
chr14	100192975	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:29:45:0.089:2	./.	./.	./.
chr14	100317272	rs34803725	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,56:32:130:0.431:2	./.	./.	./.	./.	./.	./.	./.
chr14	100331876	rs11160553	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,36:33:64:0.563:2	0/1:24,8:32:32:0.250:2	0/1:5,5:32:10:0.500:2	0/1:47,64:33:111:0.577:2	0/1:42,43:32:85:0.506:2	0/1:82,40:32:122:0.328:2	0/1:59,41:33:100:0.410:2	./.	./.	0/1:42,33:33:75:0.440:2	0/1:66,40:33:106:0.377:2
chr14	100375707	rs34198557	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,73:32:147:0.497:2	./.	./.	./.	./.	./.	./.	0/1:82,65:32:147:0.442:2
chr14	100380948	rs2250718	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,47:33:74:0.635:2	0/1:13,22:32:35:0.629:2	0/1:0,14:32:14:1.00:2	0/1:1,89:33:90:0.989:2	0/1:0,104:32:104:1.00:2	0/1:40,67:33:107:0.626:2	0/1:69,57:32:126:0.452:2	0/1:74,56:32:130:0.431:2	./.	0/1:47,44:32:91:0.484:2	0/1:0,101:32:101:1.00:2
chr14	100563943	rs3206354	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,66:31:151:0.437:2	./.	./.	./.	./.	./.
chr14	100607595	rs56051501	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:39,28:32:67:0.418:2	0/1:21,12:32:33:0.364:2	./.	./.	./.	./.	0/1:72,43:31:115:0.374:2	./.	./.	./.	./.
chr14	100615665	rs4905936	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:29:36:1.00:2	0/1:0,20:29:20:1.00:2	0/1:1,11:30:12:0.917:2	0/1:0,18:28:18:1.00:2	0/1:0,28:28:28:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,23:28:23:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,20:29:20:1.00:2	0/1:24,9:28:34:0.273:2	0/1:0,18:27:18:1.00:2
chr14	100615961	rs4905937	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:32:7:0.429:2	0/1:1,7:31:8:0.875:2	./.	./.	0/1:7,10:28:17:0.588:2	./.	./.	./.	./.	0/1:3,4:31:7:0.571:2	./.
chr14	100625902	rs7157599	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,4:32:5:0.800:2	0/1:0,3:31:3:1.00:2	./.	0/1:0,14:29:14:1.00:2	0/1:2,4:31:6:0.667:2	0/1:0,4:24:4:1.00:2	./.	0/1:0,10:29:10:1.00:2	./.	./.	0/1:0,3:31:3:1.00:2
chr14	100758875	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	100759046	rs3825555	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,17:31:17:1.00:2	0/1:6,25:31:31:0.806:2	0/1:0,12:32:12:1.00:2	0/1:0,21:32:21:1.00:2	0/1:10,11:33:21:0.524:2	0/1:3,11:31:14:0.786:2	./.	./.
chr14	100759277	rs3742379	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,17:31:30:0.567:2	./.	0/1:9,12:30:21:0.571:2	0/1:9,17:30:26:0.654:2	0/1:14,19:31:33:0.576:2	0/1:8,13:31:21:0.619:2	./.	0/1:11,15:30:26:0.577:2
chr14	100774203	rs72631832	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,39:31:73:0.534:2	./.	./.	./.
chr14	100792126	rs35097172	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,56:30:105:0.533:2	./.	./.	./.	0/1:63,34:30:97:0.351:2	0/1:56,40:31:96:0.417:2	0/1:29,40:30:69:0.580:2	./.
chr14	100792482	rs1951519	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,125:31:125:1.00:2	0/1:0,73:32:73:1.00:2	0/1:14,17:30:31:0.548:2	0/1:107,88:31:195:0.451:2	0/1:1,191:30:192:0.995:2	0/1:1,190:31:191:0.995:2	0/1:0,194:31:194:1.00:2	0/1:101,89:31:190:0.468:2	0/1:91,78:32:169:0.462:2	./.	0/1:0,155:31:155:1.00:2
chr14	100795139	rs35007880	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,47:30:47:1.00:2	0/1:0,27:31:27:1.00:2	./.	0/1:16,32:31:48:0.667:2	0/1:18,25:32:43:0.581:2	0/1:29,27:31:57:0.482:2	0/1:0,26:31:26:1.00:2	0/1:18,29:31:47:0.617:2	./.	./.	0/1:6,18:32:24:0.750:2
chr14	100795338	rs8015259	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	0/1:3,3:28:6:0.500:2	./.	0/1:0,5:31:5:1.00:2	./.
chr14	100808845	rs9453	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,132:31:133:0.992:2	0/1:0,83:31:83:1.00:2	0/1:7,6:31:13:0.462:2	0/1:85,96:30:181:0.530:2	0/1:0,163:30:163:1.00:2	0/1:2,137:30:139:0.986:2	0/1:0,178:31:178:1.00:2	0/1:88,97:30:186:0.524:2	0/1:78,85:31:163:0.521:2	./.	0/1:4,125:31:129:0.969:2
chr14	100847437	rs2273801	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,17:33:43:0.395:2	./.
chr14	100847523	rs2181170	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:30:34:1.00:2	0/1:0,19:30:19:1.00:2	0/1:1,5:32:6:0.833:2	0/1:0,31:30:31:1.00:2	0/1:0,40:28:40:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,23:29:23:1.00:2	0/1:0,44:29:44:1.00:2
chr14	100847617	rs34331240	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,18:31:43:0.419:2	./.
chr14	100847707	rs2273800	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:30:19:1.00:2	0/1:0,25:29:25:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,37:29:37:1.00:2	0/1:12,12:27:24:0.500:2	0/1:25,13:30:38:0.342:2	0/1:16,25:30:41:0.610:2	0/1:22,21:29:43:0.488:2	0/1:16,20:28:36:0.556:2	0/1:0,28:31:28:1.00:2	0/1:22,8:29:30:0.267:2
chr14	100847730	rs148611300	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,4:33:34:0.118:2	./.	./.	./.
chr14	100847930	rs3742387	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,22:29:23:0.957:2	0/1:0,22:28:22:1.00:2	./.	0/1:2,18:28:20:0.900:2	0/1:12,5:28:17:0.294:2	0/1:10,14:30:24:0.583:2	0/1:6,8:27:14:0.571:2	0/1:8,9:28:17:0.529:2	0/1:6,9:31:15:0.600:2	0/1:0,13:27:13:1.00:2	0/1:12,12:27:24:0.500:2
chr14	100848043	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:32:87:0.046:2	./.	./.	./.	./.	./.
chr14	100996312	rs13065	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,10:33:13:0.769:2	./.	./.	./.	./.	0/1:56,35:30:91:0.385:2	0/1:0,68:31:68:1.00:2	0/1:42,20:29:64:0.323:2	0/1:25,18:32:43:0.419:2
chr14	101004569	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.
chr14	101004785	rs367701102	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.
chr14	101005119	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,6:31:35:0.171:2	./.
chr14	101005215	rs12893951	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:11,5:27:16:0.313:2	0/1:10,3:27:13:0.231:2	./.	./.	./.	./.	./.	0/1:9,7:27:16:0.438:2	0/1:0,12:29:12:1.00:2	0/1:0,7:29:7:1.00:2	0/1:5,5:30:10:0.500:2
chr14	101005236	rs12892571	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:30:6:0.500:2	./.	./.	./.	./.	./.	./.	0/1:0,8:31:8:1.00:2	0/1:4,3:30:7:0.429:2	./.
chr14	101005325	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:36:2:1.00:2	./.	./.
chr14	101005599	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:28:68:0.059:2	./.	./.	./.
chr14	101198406	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,4:29:46:0.087:2	./.	./.	./.	./.	./.	./.
chr14	101198417	rs6575799	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:28:59:1.00:2	0/1:0,33:28:33:1.00:2	0/1:0,6:25:6:1.00:2	0/1:0,73:28:73:1.00:2	0/1:0,49:29:49:1.00:2	0/1:0,57:29:57:1.00:2	0/1:0,63:29:63:1.00:2	0/1:0,81:28:81:1.00:2	0/1:0,67:29:67:1.00:2	0/1:0,38:28:38:1.00:2	0/1:0,64:28:64:1.00:2
chr14	101200645	rs1802710	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,30:28:65:0.462:2	0/1:31,21:26:52:0.404:2	0/1:0,14:27:14:1.00:2	0/1:55,59:28:114:0.518:2	0/1:51,23:26:74:0.311:2	./.	./.	0/1:58,51:28:109:0.468:2	0/1:53,41:28:94:0.436:2	./.	0/1:32,22:27:55:0.407:2
chr14	101200860	rs1058009	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	101347194	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,31:33:53:0.585:2	./.	./.
chr14	101347803	rs117476938	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,12:28:33:0.364:2	./.	./.	./.
chr14	101348572	rs112608318	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,5:30:29:0.172:2
chr14	101348584	rs11623267	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	0/1:10,7:30:17:0.412:2	0/1:13,12:31:25:0.480:2	0/1:16,10:31:26:0.385:2	./.	0/1:10,17:34:27:0.630:2	0/1:17,9:32:26:0.346:2	./.
chr14	101349017	rs6575805	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,35:29:68:0.515:2	0/1:27,24:30:51:0.471:2	0/1:0,9:30:9:1.00:2	0/1:2,94:30:96:0.979:2	0/1:0,91:29:91:1.00:2	0/1:52,50:30:103:0.490:2	0/1:69,51:28:120:0.425:2	0/1:0,96:30:96:1.00:2	0/1:0,95:30:95:1.00:2	0/1:22,42:30:64:0.656:2	./.
chr14	101349764	rs34163305	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,41:29:76:0.539:2	0/1:42,35:30:77:0.455:2	./.	./.
chr14	101350298	rs3825569	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:34:5:0.600:2	./.	0/1:1,45:32:46:0.978:2	0/1:38,32:32:70:0.457:2	0/1:40,21:33:61:0.344:2	0/1:1,79:33:80:0.988:2	0/1:0,27:32:27:1.00:2	0/1:18,16:34:34:0.471:2	./.
chr14	101350342	rs181585821	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,31:31:62:0.500:2	./.	./.	./.
chr14	101350385	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:34:60:0.067:2	./.	./.
chr14	101491381	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,5:27:144:0.035:2
chr14	101493161	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:171,5:27:176:0.028:2	0/1:145,7:31:152:0.046:2	./.	./.	./.	./.	./.
chr14	101493478	rs377234552	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,5:32:191:0.026:2	./.	./.
chr14	101506010	rs117381856	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,29:32:63:0.460:2	./.	./.	./.	./.	./.
chr14	101506555	rs76847254	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:40,33:31:73:0.452:2	0/1:25,20:30:45:0.444:2	./.	0/1:41,36:31:77:0.468:2	./.	./.	./.	./.	./.	./.	./.
chr14	101507727	rs12894467	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,9:32:13:0.692:2	./.	./.	0/1:74,84:31:158:0.532:2	./.	./.	0/1:81,95:33:176:0.540:2	0/1:0,100:32:100:1.00:2	./.
chr14	101510606	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:30:116:0.034:2	./.	./.	./.	0/1:147,4:31:151:0.026:2
chr14	101512879	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,27:33:184:0.147:2
chr14	101522556	rs56103835	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,89:31:188:0.473:2	0/1:69,84:30:153:0.549:2	./.
chr14	101531854	rs61992671	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,120:32:122:0.984:2	0/1:0,57:32:57:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,109:32:109:1.00:2	0/1:71,35:32:106:0.330:2	0/1:0,128:32:129:1.00:2	0/1:1,55:32:56:0.982:2	0/1:1,96:31:98:0.990:2	./.	./.	0/1:71,28:32:99:0.283:2
chr14	102027887	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,4:32:14:0.286:2	./.	./.
chr14	102323093	rs61735777	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,92:30:172:0.535:2	./.	./.	./.	./.	./.	0/1:90,75:30:165:0.455:2	./.
chr14	102323178	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:32:118:0.034:2	./.	./.	./.	./.
chr14	102360916	rs2251246	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,65:31:133:0.492:2	0/1:60,53:32:113:0.469:2	0/1:22,31:32:53:0.585:2	0/1:63,46:31:109:0.422:2
chr14	102372801	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:32:198:0.025:2	./.	./.	./.
chr14	102384186	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:33:104:0.038:2	./.
chr14	102391577	rs3742424	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,10:32:38:0.263:2	./.	./.	./.	./.	./.	./.	./.
chr14	102446161	rs3818188	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,12:32:12:1.00:2	0/1:45,33:31:78:0.423:2	0/1:36,20:32:56:0.357:2	./.	./.	./.	./.	./.	./.
chr14	102452057	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:31:96:0.042:2	./.	./.	./.	./.
chr14	102453073	rs17512054	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,95:30:193:0.495:2	./.	./.	./.
chr14	102463407	rs12893215	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:28,32:32:60:0.533:2	0/1:28,14:33:42:0.333:2	./.	0/1:51,57:33:108:0.528:2	./.	./.	./.	0/1:47,68:33:115:0.591:2	./.	./.	./.
chr14	102478330	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:32:97:0.041:2	./.
chr14	102483555	rs201272954	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,14:13:115:0.122:2	0/1:88,9:17:97:0.093:2	./.
chr14	102492980	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:32:148:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	102493761	rs8010870	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,38:32:88:0.432:2	./.	./.	./.	0/1:56,43:31:99:0.434:2	./.	./.	./.
chr14	102500510	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,4:30:82:0.049:2	./.	./.	./.	./.	./.	./.
chr14	102504838	rs17541505	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,19:31:46:0.413:2	./.	./.	./.
chr14	102508056	rs10129889	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,41:30:79:0.519:2	./.	./.	0/1:46,28:32:74:0.378:2	./.	./.
chr14	102514227	rs13749	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,18:31:51:0.353:2	./.	./.	./.	0/1:55,36:28:91:0.396:2	./.	./.	./.
chr14	102548091	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:31:137:0.029:2	./.	./.
chr14	102548118	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:34:107:0.037:2	./.	./.
chr14	102548640	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:128,4:31:132:0.030:2	./.	./.	./.	./.	./.	./.
chr14	102548703	rs34644998	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,36:30:89:0.409:2	./.	./.	./.	./.	./.	./.	./.
chr14	102549415	rs372213976	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,6:29:113:0.053:2	./.	./.	0/1:84,5:32:89:0.056:2	./.	./.	./.	./.
chr14	102549446	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:31:111:0.036:2	./.	./.	./.
chr14	102549592	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:33:57:0.070:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	102549924	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:32:111:0.036:2	./.	./.
chr14	102550002	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,4:33:56:0.071:2	./.	./.	./.	./.	./.	./.
chr14	102550780	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,5:30:193:0.026:2	./.	./.	./.	./.	./.
chr14	102550803	rs4947	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:92,74:31:166:0.446:2	0/1:74,54:31:128:0.422:2	0/1:0,25:31:25:1.00:2	0/1:86,79:31:165:0.479:2	0/1:3,131:30:134:0.978:2	0/1:95,72:30:167:0.431:2	0/1:3,142:30:145:0.979:2	0/1:5,137:30:142:0.965:2	0/1:82,64:31:146:0.438:2	0/1:1,170:31:171:0.994:2	0/1:4,161:31:165:0.976:2
chr14	102550833	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:32:145:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	102550850	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:32:165:0.024:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	102552694	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:32:123:0.033:2	./.	./.	./.	./.	./.
chr14	102568296	rs10873531	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,39:33:89:0.438:2	0/1:26,27:33:53:0.509:2	0/1:0,10:32:10:1.00:2	0/1:47,64:33:111:0.577:2	0/1:0,110:32:110:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,111:33:111:1.00:2	0/1:64,46:33:110:0.418:2	0/1:0,103:33:103:1.00:2	0/1:2,76:33:78:0.974:2	0/1:0,90:33:90:1.00:2
chr14	102568367	rs8005905	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,30:32:66:0.455:2	0/1:28,13:31:41:0.317:2	0/1:0,12:31:12:1.00:2	0/1:39,48:32:87:0.552:2	0/1:0,71:31:71:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,72:32:72:1.00:2	0/1:2,68:31:70:0.971:2	0/1:0,77:32:77:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,71:32:72:1.00:2
chr14	102675350	rs6575900	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:38,29:29:67:0.433:2	0/1:27,25:27:52:0.481:2	./.	0/1:41,45:29:86:0.523:2	./.	0/1:46,53:30:99:0.535:2	./.	0/1:54,77:30:132:0.588:2	0/1:56,53:30:109:0.486:2	./.	0/1:75,72:28:147:0.490:2
chr14	102675401	rs186509334	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,55:31:103:0.534:2	./.	./.	./.	./.	./.	./.	./.
chr14	102695693	rs2236493	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:34,8:32:42:0.190:2	0/1:12,9:27:21:0.429:2	./.	0/1:29,32:30:61:0.525:2	./.	0/1:40,35:29:75:0.467:2	./.	0/1:44,28:29:72:0.389:2	0/1:31,25:31:56:0.446:2	./.	0/1:32,23:30:55:0.418:2
chr14	102698131	rs7152550	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,22:29:34:0.647:2	./.	0/1:13,16:30:30:0.552:2	0/1:22,16:32:38:0.421:2	./.	0/1:18,19:32:37:0.514:2
chr14	102729881	rs56377169	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,29:33:61:0.475:2	./.	0/1:30,21:32:51:0.412:2	0/1:50,33:34:83:0.398:2	./.	0/1:42,44:34:86:0.512:2
chr14	102729886	rs34931752	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,17:32:49:0.347:2	./.	./.	./.	./.	./.	./.	./.
chr14	102732159	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:32:53:0.075:2	./.	./.
chr14	102792386	rs7158731	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,25:32:25:1.00:2	0/1:0,10:29:10:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,10:32:22:0.455:2
chr14	102792631	rs7158139	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,28:31:28:1.00:2	0/1:2,18:31:20:0.900:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,18:30:44:0.409:2
chr14	102792701	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	102792988	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,3:32:33:0.091:2
chr14	102798055	rs1543540	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,18:32:39:0.462:2	0/1:14,7:32:21:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	102807671	rs9464	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,92:31:187:0.492:2	./.	0/1:98,94:31:192:0.490:2	0/1:111,80:32:191:0.419:2	./.	./.
chr14	102808273	rs1053019	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,45:28:91:0.495:2	./.	0/1:72,71:28:144:0.497:2	0/1:60,65:28:125:0.520:2	./.	./.
chr14	102808330	rs12590618	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,37:31:72:0.514:2	0/1:0,53:30:53:1.00:2	./.	./.	./.	0/1:56,34:32:90:0.378:2	0/1:1,57:31:58:0.983:2	./.
chr14	102814945	rs7012	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,5:28:8:0.625:2	0/1:38,50:29:88:0.568:2	0/1:1,99:30:100:0.990:2	./.	./.	./.	0/1:49,49:30:98:0.500:2	0/1:0,68:30:68:1.00:2	./.
chr14	102815042	rs7011	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,6:31:12:0.500:2	0/1:56,52:31:108:0.481:2	./.	./.	0/1:3,123:31:126:0.976:2	./.	./.	./.	./.
chr14	102873699	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,4:31:111:0.036:2	./.	./.	./.	./.	./.	./.	./.
chr14	102894593	rs1309353	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,15:31:45:0.333:2	0/1:14,12:31:26:0.462:2	0/1:0,7:32:7:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,42:31:42:1.00:2	0/1:1,73:31:74:0.986:2
chr14	102901023	rs45605932	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,26:31:53:0.491:2	./.	0/1:35,31:31:66:0.470:2	0/1:19,15:33:34:0.441:2	./.	./.
chr14	102901201	rs10149146	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:31:2:1.00:2	0/1:13,18:29:31:0.581:2	./.	./.	0/1:2,33:28:35:0.943:2	./.	./.	./.	./.
chr14	102901204	rs45467297	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,12:28:26:0.462:2	0/1:11,5:28:16:0.313:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	102909991	rs17100923	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,15:30:53:0.283:2	./.	0/1:32,39:30:71:0.549:2	0/1:39,22:31:61:0.361:2	./.	./.
chr14	102916971	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:31:124:0.032:2
chr14	103188738	rs61739374	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,9:31:49:0.184:2	./.	./.	./.	./.	./.	./.	./.
chr14	103338287	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:31:165:0.024:2	./.	./.	./.	./.	./.
chr14	103338324	rs2295402	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,76:30:184:0.413:2	./.	./.	./.	0/1:66,52:30:118:0.441:2	0/1:6,180:31:186:0.968:2	0/1:97,85:31:182:0.467:2	./.
chr14	103342049	rs1131877	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,33:29:63:0.524:2	./.	./.	./.	0/1:25,36:30:61:0.590:2	0/1:0,58:30:58:1.00:2	0/1:26,24:30:50:0.480:2	./.
chr14	103388999	rs2295828	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:27:37:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,17:30:17:1.00:2	0/1:49,31:30:80:0.388:2	0/1:40,12:30:53:0.231:2	./.	0/1:1,20:29:21:0.952:2	0/1:65,20:30:85:0.235:2	./.	0/1:46,17:29:63:0.270:2	0/1:18,10:30:29:0.357:2
chr14	103389003	rs2295829	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,17:25:37:0.459:2	0/1:15,20:29:35:0.571:2	0/1:0,17:29:17:1.00:2	0/1:49,31:29:80:0.388:2	0/1:40,12:30:52:0.231:2	./.	0/1:7,14:28:21:0.667:2	0/1:62,22:29:84:0.262:2	./.	0/1:45,17:29:62:0.274:2	0/1:19,11:31:30:0.367:2
chr14	103395988	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,13:33:25:0.520:2	./.	./.
chr14	103404739	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,4:28:42:0.095:2	./.	./.	./.	./.	./.	./.	./.
chr14	103429420	rs34301396	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,22:32:45:0.489:2	0/1:26,12:32:38:0.316:2	./.	./.	./.	./.	./.	./.
chr14	103430983	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,3:32:24:0.125:2	./.	./.
chr14	103440473	rs8009219	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,20:33:40:0.500:2	0/1:11,11:33:22:0.500:2	0/1:2,3:33:5:0.600:2	0/1:0,39:33:39:1.00:2	0/1:16,13:32:29:0.448:2	0/1:0,31:33:31:1.00:2	0/1:23,12:33:35:0.343:2	./.	0/1:0,34:33:34:1.00:2	0/1:13,13:31:26:0.500:2	0/1:0,23:33:23:1.00:2
chr14	103566785	rs2297067	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:36,40:32:76:0.526:2	0/1:19,20:32:39:0.513:2	0/1:0,7:32:7:1.00:2	./.	./.	./.	0/1:65,39:32:104:0.375:2	0/1:68,37:33:105:0.352:2	0/1:63,48:33:111:0.432:2	./.	./.
chr14	103566835	rs2297066	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:42,35:32:77:0.455:2	0/1:21,18:32:39:0.462:2	0/1:0,8:33:8:1.00:2	./.	./.	./.	0/1:62,30:32:92:0.326:2	0/1:51,44:33:95:0.463:2	0/1:58,37:33:95:0.389:2	./.	./.
chr14	103566904	rs1057640	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,64:31:172:0.372:2	./.	./.	0/1:68,38:31:106:0.358:2
chr14	103568614	rs10131298	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	0/1:0,4:29:4:1.00:2	./.	./.
chr14	103568981	rs77071436	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:29:4:1.00:2	./.	./.	./.
chr14	103570704	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,4:31:31:0.129:2	./.	./.	./.	./.
chr14	103576395	rs729185	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,41:30:62:0.661:2
chr14	103576415	rs729184	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:32:53:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,9:31:9:1.00:2	0/1:1,54:31:55:0.982:2	0/1:1,49:29:50:0.980:2	0/1:0,66:31:66:1.00:2	0/1:2,24:30:26:0.923:2	0/1:1,51:30:52:0.981:2	0/1:38,29:32:67:0.433:2	0/1:0,35:31:35:1.00:2	0/1:0,32:31:32:1.00:2
chr14	103576443	rs729183	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,34:26:34:1.00:2	./.	./.	./.	./.	./.
chr14	103576444	rs744153	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,34:30:34:1.00:2	./.	./.	./.	./.	./.
chr14	103593950	rs1132339	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,3:34:3:1.00:2	./.	./.	0/1:4,3:34:7:0.429:2	0/1:0,8:29:8:1.00:2	./.	0/1:0,5:33:5:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,6:32:6:1.00:2	./.	0/1:4,3:34:7:0.429:2
chr14	103923475	rs2273699	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,10:32:20:0.500:2	0/1:70,73:33:143:0.510:2	./.	0/1:75,58:32:133:0.436:2	./.	0/1:63,58:33:121:0.479:2	./.	./.	0/1:90,86:33:176:0.489:2
chr14	103934488	rs10137161	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,135:32:135:1.00:2	0/1:0,75:32:76:1.00:2	0/1:0,37:33:37:1.00:2	0/1:0,150:32:150:1.00:2	0/1:0,152:32:152:1.00:2	0/1:0,171:32:171:1.00:2	0/1:0,192:33:192:1.00:2	0/1:0,180:32:180:1.00:2	0/1:0,161:33:161:1.00:2	0/1:1,148:32:149:0.993:2	0/1:1,169:32:171:0.994:2
chr14	103986255	rs1803283	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,31:30:32:0.969:2	0/1:0,17:32:17:1.00:2	0/1:3,5:32:8:0.625:2	0/1:24,22:31:46:0.478:2	0/1:0,57:31:57:1.00:2	0/1:23,26:31:49:0.531:2	0/1:1,66:31:67:0.985:2	0/1:32,34:31:66:0.515:2	0/1:0,55:32:55:1.00:2	0/1:2,42:30:44:0.955:2	0/1:24,22:31:46:0.478:2
chr14	103996396	rs2765037	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:32:65:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,134:32:135:1.00:2	0/1:0,153:32:153:1.00:2	0/1:0,118:32:118:1.00:2	0/1:0,154:32:154:1.00:2	0/1:0,169:32:169:1.00:2	0/1:0,92:33:92:1.00:2	0/1:0,68:33:68:1.00:2	0/1:0,74:32:74:1.00:2
chr14	104026878	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:33:191:0.021:2	./.	./.	./.
chr14	104028270	rs7148456	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:69,52:30:121:0.430:2	0/1:34,50:29:84:0.595:2	./.	./.	0/1:81,63:30:144:0.438:2	./.	./.	./.	./.	./.	./.
chr14	104029378	rs2274268	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:26:4:0.750:2	./.	./.	./.	./.	./.
chr14	104029449	rs2274267	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,5:32:12:0.417:2	./.	./.	./.	./.	./.	./.
chr14	104056557	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,3:33:43:0.070:2	./.
chr14	104121105	rs142230743	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:33:15:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	104123944	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:32:154:0.026:2	./.
chr14	104165753	rs861539	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,31:30:70:0.443:2	./.	0/1:40,42:30:82:0.512:2	0/1:42,70:31:112:0.625:2	0/1:1,99:31:100:0.990:2	./.	./.	0/1:35,26:31:61:0.426:2
chr14	104166994	rs3212102	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,33:29:72:0.458:2	./.	./.	./.
chr14	104167075	rs861537	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,13:32:19:0.684:2	0/1:6,13:32:19:0.684:2	./.	0/1:24,18:32:42:0.429:2	0/1:35,18:31:53:0.340:2	0/1:18,23:31:41:0.561:2	0/1:20,26:31:46:0.565:2	0/1:0,56:31:56:1.00:2	./.	./.	0/1:17,22:31:39:0.564:2
chr14	104167545	rs709399	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,10:30:43:0.233:2	0/1:15,8:31:23:0.348:2	./.	0/1:14,31:30:45:0.689:2	0/1:22,10:27:32:0.313:2	0/1:26,16:29:42:0.381:2	0/1:28,14:29:42:0.333:2	0/1:0,27:29:27:1.00:2	./.	./.	0/1:30,24:31:54:0.444:2
chr14	104167564	rs861536	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,18:32:29:0.621:2	./.	0/1:17,11:30:28:0.393:2	0/1:14,8:28:22:0.364:2	0/1:0,19:30:19:1.00:2	./.	./.	0/1:24,10:28:34:0.294:2
chr14	104194196	rs1535100	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,3:33:3:1.00:2	0/1:0,58:33:58:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,50:32:50:1.00:2	0/1:32,18:33:50:0.360:2	0/1:0,66:32:66:1.00:2	0/1:27,24:34:51:0.471:2	0/1:0,30:32:30:1.00:2	0/1:0,26:32:26:1.00:2
chr14	104199356	rs2295146	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:55,48:32:103:0.466:2	0/1:33,26:32:59:0.441:2	./.	./.	0/1:70,62:31:133:0.470:2	./.	./.	./.	./.	./.	./.
chr14	104201549	rs3825550	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,44:31:104:0.423:2	./.	./.	./.	./.
chr14	104205123	rs17292804	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,87:31:169:0.515:2	./.	./.	./.	./.	./.	./.
chr14	104381502	rs1053419	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:24,24:29:48:0.500:2	0/1:15,15:29:30:0.500:2	./.	./.	./.	./.	0/1:15,10:31:25:0.400:2	./.	0/1:14,18:30:32:0.563:2	0/1:21,13:29:34:0.382:2	./.
chr14	104394850	rs9324066	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,9:29:21:0.429:2	0/1:15,4:30:19:0.211:2	./.	./.	./.	0/1:0,73:30:73:1.00:2	./.	./.	0/1:21,21:30:42:0.500:2	0/1:0,30:31:30:1.00:2	./.
chr14	104429453	rs6576013	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,152:29:152:1.00:2	0/1:0,86:29:86:1.00:2	0/1:0,28:30:28:1.00:2	0/1:2,163:30:165:0.988:2	0/1:1,94:30:95:0.989:2	0/1:1,154:29:155:0.994:2	0/1:0,130:30:130:1.00:2	0/1:0,170:30:170:1.00:2	0/1:0,178:31:178:1.00:2	0/1:0,142:29:142:1.00:2	0/1:0,174:30:174:1.00:2
chr14	104436931	rs11851097	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,12:32:38:0.316:2	0/1:17,13:32:30:0.433:2	./.	./.	./.	0/1:0,43:31:43:1.00:2	./.	./.	./.	0/1:20,28:32:48:0.583:2	./.
chr14	104452640	rs10143389	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:30:16:0.375:2	./.	./.	0/1:2,102:31:104:0.981:2	./.	./.	./.	0/1:47,45:32:92:0.489:2	./.
chr14	104464990	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:32:91:0.044:2	./.
chr14	104465037	rs10133836	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:33:85:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,9:32:9:1.00:2	0/1:1,122:34:123:0.992:2	0/1:0,76:33:76:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,77:33:77:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,134:33:134:1.00:2	0/1:1,85:32:86:0.988:2	0/1:0,132:33:132:1.00:2
chr14	104472756	rs79402943	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,24:32:47:0.511:2	0/1:22,19:32:41:0.463:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	104473128	rs35030451	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,53:31:143:0.371:2	0/1:41,43:31:84:0.512:2	./.
chr14	104481083	rs11160779	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:31:10:0.500:2	./.	./.	0/1:3,25:32:28:0.893:2	./.	./.	./.	0/1:21,21:33:42:0.500:2	./.
chr14	104488633	rs79863141	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,64:32:133:0.481:2	0/1:48,35:32:83:0.422:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	104488636	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:31:123:0.033:2	./.	./.	./.	./.	./.
chr14	104497543	rs10135507	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:30:7:0.714:2	./.	./.	0/1:0,25:30:25:1.00:2	./.	./.	./.	0/1:19,27:31:46:0.587:2	./.
chr14	104498428	rs148393162	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,4:25:10:0.444:2	./.	./.	./.	./.
chr14	104500301	rs76761167	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,28:29:71:0.394:2	./.	./.	./.	./.	./.	./.
chr14	104506657	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:32:132:0.030:2	./.	./.	./.	./.	./.
chr14	104518420	rs45550534	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,12:31:28:0.429:2	0/1:12,11:33:23:0.478:2	./.
chr14	104559852	rs941953	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:28,23:32:51:0.451:2	0/1:13,11:32:24:0.458:2	0/1:0,5:31:5:1.00:2	./.	./.	0/1:50,20:33:70:0.286:2	0/1:56,46:33:102:0.451:2	./.	0/1:0,58:33:58:1.00:2	./.	0/1:39,23:33:62:0.371:2
chr14	104559919	rs1770984	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:26,19:29:45:0.422:2	0/1:8,8:28:16:0.500:2	0/1:0,6:28:6:1.00:2	./.	./.	0/1:43,29:27:72:0.403:2	0/1:54,39:29:93:0.419:2	./.	0/1:0,46:29:46:1.00:2	./.	0/1:42,20:27:62:0.323:2
chr14	104559922	rs1744284	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:26,19:31:45:0.422:2	0/1:8,8:29:16:0.500:2	0/1:0,6:28:6:1.00:2	./.	./.	0/1:42,29:30:71:0.408:2	0/1:51,39:30:90:0.433:2	./.	0/1:0,45:30:45:1.00:2	./.	0/1:42,20:31:62:0.323:2
chr14	104563932	rs1465163	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,18:32:59:0.305:2	0/1:26,14:31:40:0.350:2	./.	./.	./.	./.	./.	./.	0/1:38,41:32:79:0.519:2	./.	0/1:31,47:31:78:0.603:2
chr14	104571054	rs8012505	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:43,42:33:85:0.494:2	0/1:18,26:32:44:0.591:2	./.	0/1:78,86:32:164:0.524:2	./.	./.	./.	./.	./.	./.	0/1:32,39:32:71:0.549:2
chr14	104571745	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:32:109:0.037:2	./.
chr14	104577860	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,20:32:37:0.541:2	./.	./.	./.	./.
chr14	104578817	rs11850264	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,97:31:101:0.960:2	./.	./.	./.
chr14	104578864	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:32:65:0.062:2	./.
chr14	104633227	rs76304797	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,20:28:45:0.444:2	./.	./.	./.	./.	./.	./.
chr14	104639351	rs117777904	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,56:32:94:0.596:2	./.	./.
chr14	104639519	rs61743517	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,4:31:14:0.286:2	./.	./.	./.	./.	./.	./.
chr14	104641612	rs4906422	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,11:32:15:0.733:2	./.	0/1:0,7:32:7:1.00:2	./.	./.	./.	./.	./.
chr14	104641792	rs2487305	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:33:3:1.00:2	./.	0/1:1,4:32:5:0.800:2
chr14	104642341	rs2487304	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,12:28:12:1.00:2	./.	./.	0/1:0,4:31:4:1.00:2	./.	0/1:0,3:28:3:1.00:2
chr14	104642422	rs3742947	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:35:2:1.00:2	./.	./.	./.	./.	./.
chr14	104642524	rs78184481	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,4:30:13:0.308:2	./.	./.	./.	./.	./.	./.
chr14	104642759	rs200700317	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:34:10:0.400:2	./.	./.	./.	./.	./.	./.	./.
chr14	104643123	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,10:32:24:0.417:2	./.	./.	./.
chr14	104643409	rs2487303	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,6:29:6:1.00:2	./.	0/1:0,4:29:4:1.00:2	./.	./.	./.
chr14	104643721	rs2487301	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,4:33:4:1.00:2	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	0/1:0,4:30:4:1.00:2	./.	0/1:0,3:35:3:1.00:2
chr14	104644212	rs61743202	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.
chr14	105070791	rs3803313	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,3:27:3:1.00:2	./.	0/1:0,2:30:2:1.00:2	0/1:0,2:27:2:1.00:2	0/1:0,4:30:4:1.00:2	./.	0/1:0,3:29:3:1.00:2	0/1:0,6:29:6:1.00:2	./.	./.	./.
chr14	105167744	rs62638758	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,17:29:42:0.405:2	0/1:18,13:30:31:0.419:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	105167807	rs4983530	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:32:30:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,26:32:26:1.00:2
chr14	105170222	rs7145851	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:1,21:29:22:0.955:2	0/1:1,17:31:18:0.944:2	./.	./.	./.	./.	0/1:35,24:31:59:0.407:2	./.	./.	./.	./.
chr14	105173365	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,2:34:5:0.400:2
chr14	105173831	rs3809455	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,10:30:37:0.270:2	./.	./.	./.	./.	./.	./.	./.
chr14	105174186	rs181694819	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,9:32:19:0.474:2	./.	./.	./.
chr14	105175085	rs11850821	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,44:31:94:0.468:2	./.	./.	./.
chr14	105177427	rs59751492	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,50:32:105:0.476:2	./.	./.	./.	./.	./.
chr14	105178851	rs62640005	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:29:12:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	105179194	rs10133301	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:30:43:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,11:31:11:1.00:2	0/1:40,40:30:80:0.500:2	0/1:71,47:29:118:0.398:2	0/1:0,78:30:78:1.00:2	0/1:0,98:30:99:1.00:2	0/1:2,101:30:103:0.981:2	0/1:0,82:31:82:1.00:2	0/1:0,47:31:47:1.00:2	0/1:1,50:30:51:0.980:2
chr14	105180565	rs4983535	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,7:32:7:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,2:31:2:1.00:2	0/1:10,9:31:19:0.474:2	0/1:14,5:32:19:0.263:2	0/1:1,13:29:14:0.929:2	0/1:0,9:32:9:1.00:2	0/1:0,12:28:12:1.00:2	0/1:0,13:34:13:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,9:31:9:1.00:2
chr14	105180568	rs75382114	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:29:7:0.429:2	./.
chr14	105180607	rs186075307	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,5:28:10:0.500:2	./.	./.	./.
chr14	105180652	rs117457867	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,7:31:21:0.333:2	0/1:5,7:32:12:0.583:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	105180706	rs1128840	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:31:8:1.00:2	0/1:22,21:32:43:0.488:2	0/1:53,29:32:82:0.354:2	0/1:0,43:31:43:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,36:33:36:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,50:31:50:1.00:2
chr14	105180814	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,4:31:52:0.077:2	./.	./.	./.	./.	./.	./.	./.
chr14	105180884	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:32:36:0.111:2	./.	./.	./.	./.
chr14	105196230	rs80097179	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,9:31:14:0.643:2	0/1:3,5:31:8:0.625:2	./.	0/1:3,6:32:9:0.667:2	0/1:4,4:34:8:0.500:2	0/1:3,5:31:8:0.625:2	./.	./.	./.	0/1:0,17:31:17:1.00:2	0/1:4,5:30:9:0.556:2
chr14	105196235	rs34672588	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,14:28:14:1.00:2	0/1:0,11:29:11:1.00:2	./.	0/1:4,8:29:12:0.667:2	0/1:7,7:28:14:0.500:2	0/1:3,7:28:10:0.700:2	./.	./.	./.	0/1:0,20:28:20:1.00:2	0/1:4,6:25:10:0.600:2
chr14	105196365	rs33958252	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:31:61:1.00:2	0/1:0,41:32:41:1.00:2	0/1:2,4:32:6:0.667:2	0/1:33,40:33:73:0.548:2	0/1:66,46:32:112:0.411:2	0/1:30,38:32:68:0.559:2	./.	0/1:59,52:32:111:0.468:2	./.	0/1:0,65:32:65:1.00:2	0/1:38,24:32:62:0.387:2
chr14	105207040	rs12894569	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,27:32:48:0.563:2	0/1:13,11:31:24:0.458:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	105211221	rs12432802	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,41:31:89:0.461:2	./.	./.	./.	0/1:0,69:32:69:1.00:2	0/1:43,35:32:78:0.449:2
chr14	105212670	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,26:32:52:0.500:2	0/1:19,15:31:34:0.441:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	105213343	rs6644	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:30:103:1.00:2	0/1:3,84:30:87:0.966:2	0/1:7,16:30:23:0.696:2	0/1:65,60:31:125:0.480:2	0/1:76,73:30:149:0.490:2	0/1:91,60:30:151:0.397:2	./.	0/1:77,75:31:153:0.493:2	./.	0/1:0,122:30:123:1.00:2	0/1:81,61:30:143:0.430:2
chr14	105222037	rs1132975	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,25:32:51:0.490:2	0/1:8,13:32:21:0.619:2	./.	0/1:23,20:32:43:0.465:2	0/1:19,50:32:69:0.725:2	0/1:32,24:32:56:0.429:2	./.	0/1:31,41:32:72:0.569:2	./.	0/1:1,58:32:59:0.983:2	0/1:22,24:32:46:0.522:2
chr14	105238711	rs139297659	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,83:31:159:0.522:2	./.	./.	./.
chr14	105239894	rs1130233	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,18:29:45:0.400:2	0/1:16,13:31:29:0.448:2	./.	0/1:41,18:31:59:0.305:2	0/1:24,33:29:57:0.579:2	./.	./.	./.	./.	0/1:25,15:30:40:0.375:2	0/1:6,23:28:29:0.793:2
chr14	105267579	rs12878684	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,4:32:4:1.00:2	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	0/1:0,2:30:2:1.00:2	./.	./.	./.
chr14	105267934	rs34284721	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,50:31:51:0.980:2	0/1:0,56:31:56:1.00:2	./.	./.	0/1:32,40:30:72:0.556:2	./.	./.	./.	./.	./.	./.
chr14	105268104	rs10141867	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,60:31:60:1.00:2	0/1:0,26:30:26:1.00:2	./.	./.	0/1:2,82:30:84:0.976:2	./.	./.	0/1:68,42:30:110:0.382:2	./.	./.	0/1:32,25:31:57:0.439:2
chr14	105268228	rs4983387	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,17:31:17:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,26:30:26:1.00:2	0/1:2,17:31:19:0.895:2	0/1:13,14:31:27:0.519:2	0/1:0,25:32:25:1.00:2	0/1:5,19:30:24:0.792:2	0/1:11,10:31:21:0.476:2
chr14	105268511	rs73350336	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	105268701	rs61734768	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,61:31:118:0.517:2	./.	./.	./.
chr14	105269404	rs116837515	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,12:32:21:0.571:2	./.	./.	./.
chr14	105269408	rs11403660	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,4:27:14:0.286:2	./.	./.	./.	./.	./.
chr14	105269484	rs193244604	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,49:30:131:0.374:2	./.	./.	./.	./.
chr14	105269779	rs3803300	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,41:31:43:0.953:2	0/1:0,26:32:26:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,55:31:55:1.00:2	0/1:1,56:31:58:0.982:2	0/1:2,70:32:72:0.972:2	0/1:0,62:31:62:1.00:2	0/1:0,91:31:91:1.00:2	0/1:2,73:33:75:0.973:2	0/1:38,18:31:56:0.321:2	0/1:32,37:31:69:0.536:2
chr14	105270456	rs12432615	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,43:32:109:0.394:2	./.	./.	./.
chr14	105270485	rs62902662	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,34:24:65:0.523:2	0/1:22,15:26:37:0.405:2	./.	0/1:57,44:27:101:0.436:2	0/1:70,82:26:152:0.539:2	0/1:52,54:26:107:0.509:2	0/1:56,88:27:144:0.611:2	0/1:32,63:27:95:0.663:2	0/1:35,44:24:81:0.557:2	0/1:55,16:28:72:0.225:2	0/1:48,23:26:71:0.324:2
chr14	105270512	rs140954212	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,14:31:101:0.139:2	0/1:76,4:33:80:0.050:2	./.	./.
chr14	105344293	rs61995995	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:1,25:32:26:0.962:2	./.	0/1:0,73:31:73:1.00:2	0/1:2,118:31:120:0.983:2	0/1:53,37:31:91:0.411:2	0/1:96,47:31:143:0.329:2	0/1:0,125:31:125:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,60:31:60:1.00:2	./.
chr14	105344761	rs41317300	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,78:33:78:1.00:2	0/1:0,31:32:31:1.00:2	./.	0/1:2,110:31:112:0.982:2	0/1:4,150:31:154:0.974:2	0/1:82,70:31:152:0.461:2	0/1:108,83:31:191:0.435:2	0/1:2,127:32:129:0.984:2	0/1:2,93:32:95:0.979:2	0/1:0,79:32:79:1.00:2	./.
chr14	105344823	rs41314519	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,54:33:80:0.675:2	./.	./.	./.	./.
chr14	105346632	rs72700176	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,28:31:62:0.452:2	./.	./.	./.	./.
chr14	105349388	rs2028414	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:29:5:1.00:2	./.	./.	0/1:0,2:28:2:1.00:2	0/1:2,3:29:5:0.600:2	./.	./.	0/1:0,4:29:4:1.00:2	0/1:0,5:30:5:1.00:2	./.
chr14	105349472	rs12101026	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	105349841	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:30:43:0.093:2	./.	./.	./.	./.	./.
chr14	105350178	rs45449696	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,11:31:17:0.647:2	./.	0/1:6,7:31:13:0.538:2	./.	./.
chr14	105350235	rs2582555	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,18:30:18:1.00:2	0/1:0,7:32:7:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	105350355	rs2841236	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:30:36:1.00:2	0/1:0,12:30:12:1.00:2	0/1:7,3:28:10:0.300:2	0/1:0,44:30:44:1.00:2	0/1:35,43:30:78:0.551:2	0/1:0,44:30:44:1.00:2	0/1:51,45:30:96:0.469:2	0/1:39,33:30:72:0.458:2	0/1:0,51:31:51:1.00:2	0/1:0,45:30:45:1.00:2	./.
chr14	105350799	rs9788593	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,23:29:23:1.00:2	0/1:0,20:30:20:1.00:2	./.	0/1:1,40:29:41:0.976:2	0/1:0,100:30:100:1.00:2	0/1:19,22:28:41:0.537:2	0/1:0,84:30:84:1.00:2	0/1:0,65:30:65:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,49:30:50:1.00:2	./.
chr14	105350868	rs9788594	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,22:31:23:1.00:2	0/1:0,26:32:26:1.00:2	./.	0/1:0,69:31:69:1.00:2	0/1:0,141:31:141:1.00:2	0/1:42,43:31:85:0.506:2	0/1:0,104:32:104:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,59:31:59:1.00:2	./.
chr14	105352651	rs62641737	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,5:28:5:1.00:2	./.	./.	0/1:3,4:31:7:0.571:2	./.	./.	./.
chr14	105354293	rs2582548	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	0/1:0,2:29:2:1.00:2	./.
chr14	105393556	rs2841280	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,33:33:33:1.00:2	0/1:1,33:33:34:0.971:2	0/1:0,9:32:9:1.00:2	./.	./.	0/1:36,31:33:67:0.463:2	0/1:14,21:32:35:0.600:2	./.	./.	0/1:28,29:33:57:0.509:2	0/1:0,25:32:25:1.00:2
chr14	105404499	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:33:119:0.034:2
chr14	105405599	rs3742935	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,5:31:14:0.357:2	0/1:0,107:31:107:1.00:2	0/1:1,72:30:73:0.986:2	0/1:72,49:31:121:0.405:2	0/1:65,33:32:98:0.337:2	0/1:2,92:31:94:0.979:2	0/1:0,120:32:120:1.00:2	0/1:65,44:31:109:0.404:2	./.
chr14	105405942	rs28454709	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:31:3:0.667:2	0/1:0,50:31:50:1.00:2	0/1:0,43:31:43:1.00:2	0/1:26,25:30:51:0.490:2	0/1:34,31:31:65:0.477:2	0/1:2,60:31:62:0.968:2	0/1:0,57:32:57:1.00:2	0/1:21,19:31:40:0.475:2	./.
chr14	105406110	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,10:16:61:0.164:2	./.	./.
chr14	105406235	rs78014542	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,9:31:15:0.600:2	./.	./.	./.	./.
chr14	105406238	rs2819419	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,21:32:21:1.00:2	0/1:0,17:31:17:1.00:2	0/1:7,10:30:17:0.588:2	0/1:10,6:31:16:0.375:2	0/1:0,29:31:29:1.00:2	0/1:0,19:33:19:1.00:2	0/1:3,5:30:8:0.625:2	./.
chr14	105406372	rs61421370	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,65:32:66:0.985:2	0/1:1,81:31:82:0.988:2	0/1:33,32:32:65:0.492:2	./.	0/1:0,74:32:74:1.00:2	0/1:2,65:33:67:0.970:2	0/1:21,16:32:37:0.432:2	./.
chr14	105407031	rs11623422	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,22:33:22:1.00:2	0/1:0,28:31:28:1.00:2	0/1:19,11:31:30:0.367:2	0/1:9,7:33:16:0.438:2	0/1:3,29:32:32:0.906:2	0/1:0,43:33:43:1.00:2	0/1:10,8:31:18:0.444:2	./.
chr14	105407208	rs11851053	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,23:32:25:0.958:2	0/1:0,26:31:26:1.00:2	0/1:24,13:32:37:0.351:2	0/1:18,11:33:29:0.379:2	0/1:0,32:32:32:1.00:2	0/1:0,38:33:38:1.00:2	0/1:20,14:32:34:0.412:2	./.
chr14	105407327	rs77215854	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,10:29:25:0.400:2	./.	./.	./.	./.
chr14	105407525	rs76611205	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,12:28:27:0.444:2	./.	./.	./.	./.
chr14	105407798	rs4465542	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:30:5:0.600:2	0/1:0,65:30:65:1.00:2	0/1:1,60:29:61:0.984:2	0/1:30,51:30:81:0.630:2	0/1:31,37:30:68:0.544:2	0/1:0,86:30:87:1.00:2	0/1:3,83:31:86:0.965:2	0/1:41,37:30:78:0.474:2	./.
chr14	105408030	rs9671643	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:29:9:0.444:2	0/1:0,62:29:62:1.00:2	0/1:2,45:29:47:0.957:2	0/1:25,45:30:70:0.643:2	0/1:31,30:29:61:0.492:2	0/1:1,69:29:70:0.986:2	0/1:1,59:30:60:0.983:2	0/1:34,43:29:77:0.558:2	./.
chr14	105408140	rs201663085	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:29:54:0.074:2	./.	./.	./.	./.
chr14	105408182	rs9672139	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:32:8:0.375:2	0/1:1,55:32:56:0.982:2	0/1:0,30:32:30:1.00:2	0/1:31,42:32:73:0.575:2	./.	0/1:0,51:32:51:1.00:2	0/1:0,54:33:54:1.00:2	0/1:29,20:32:49:0.408:2	./.
chr14	105408237	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,21:32:52:0.404:2	./.	./.
chr14	105408315	rs28600075	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,8:31:12:0.667:2	0/1:0,119:30:119:1.00:2	0/1:2,80:29:82:0.976:2	0/1:60,69:30:129:0.535:2	0/1:40,56:30:96:0.583:2	0/1:2,125:30:127:0.984:2	0/1:0,66:31:66:1.00:2	0/1:50,42:30:92:0.457:2	./.
chr14	105408811	rs2819421	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,6:29:9:0.667:2	0/1:1,84:29:85:0.988:2	0/1:0,44:28:44:1.00:2	0/1:47,41:29:88:0.466:2	0/1:35,32:29:67:0.478:2	0/1:1,111:29:112:0.991:2	0/1:0,75:30:75:1.00:2	0/1:40,34:29:74:0.459:2	./.
chr14	105408827	rs11850949	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,6:32:10:0.600:2	0/1:0,83:32:83:1.00:2	0/1:0,50:31:50:1.00:2	0/1:54,47:31:101:0.465:2	0/1:45,39:32:84:0.464:2	0/1:3,124:32:127:0.976:2	0/1:0,78:33:78:1.00:2	0/1:47,34:32:81:0.420:2	./.
chr14	105408955	rs2819422	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,91:29:93:0.978:2	0/1:0,110:29:110:1.00:2	0/1:66,63:30:129:0.488:2	0/1:71,48:29:119:0.403:2	0/1:1,152:30:153:0.993:2	0/1:0,74:30:74:1.00:2	0/1:54,39:30:94:0.419:2	./.
chr14	105409196	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,4:33:54:0.074:2	./.	./.	./.	./.	./.	./.
chr14	105409224	rs200744851	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,4:32:58:0.069:2	./.	./.	./.	./.	./.	./.
chr14	105409518	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,5:31:121:0.041:2	./.	./.	./.	./.
chr14	105409907	rs10141053	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,89:29:92:0.967:2	0/1:1,100:28:101:0.990:2	0/1:56,42:28:98:0.429:2	./.	0/1:0,146:29:146:1.00:2	0/1:2,94:30:96:0.979:2	0/1:60,39:29:99:0.394:2	./.
chr14	105409959	rs10152073	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,11:30:16:0.688:2	0/1:3,108:30:111:0.973:2	0/1:2,85:30:87:0.977:2	0/1:59,48:30:107:0.449:2	0/1:33,37:31:70:0.529:2	0/1:0,145:31:145:1.00:2	0/1:0,107:32:107:1.00:2	0/1:51,33:31:84:0.393:2	./.
chr14	105410183	rs10438246	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,7:29:16:0.438:2	0/1:3,107:29:110:0.973:2	0/1:1,112:30:113:0.991:2	0/1:65,65:29:130:0.500:2	0/1:70,67:29:137:0.489:2	0/1:2,182:29:184:0.989:2	0/1:0,118:30:118:1.00:2	0/1:68,65:29:133:0.489:2	./.
chr14	105410411	rs11160825	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,79:31:79:1.00:2	0/1:1,56:31:57:0.982:2	0/1:48,43:31:91:0.473:2	0/1:42,21:31:63:0.333:2	0/1:0,134:31:134:1.00:2	0/1:0,91:33:91:1.00:2	0/1:37,45:31:82:0.549:2	./.
chr14	105410775	rs2819424	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,65:29:67:0.970:2	0/1:0,39:30:39:1.00:2	0/1:43,48:29:91:0.527:2	0/1:31,26:29:57:0.456:2	0/1:1,99:29:100:0.990:2	0/1:0,64:29:64:1.00:2	0/1:37,29:28:66:0.439:2	./.
chr14	105410827	rs28380382	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,59:32:59:1.00:2	0/1:0,42:31:42:1.00:2	0/1:41,33:31:74:0.446:2	0/1:27,21:31:49:0.438:2	0/1:3,91:32:94:0.968:2	0/1:0,63:33:63:1.00:2	0/1:35,25:32:60:0.417:2	./.
chr14	105410847	rs142034707	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	105411153	rs34499888	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,69:32:69:1.00:2	0/1:10,9:32:19:0.474:2	0/1:26,41:31:67:0.612:2	./.	0/1:0,69:32:69:1.00:2	0/1:0,46:32:46:1.00:2	0/1:25,24:33:49:0.490:2	./.
chr14	105411162	rs61316883	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,13:31:25:0.520:2	./.	./.	./.	./.
chr14	105411174	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,4:28:32:0.125:2	./.	./.	./.	./.	./.	./.
chr14	105411184	rs202194152	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,4:33:40:0.100:2	./.	./.	./.	./.	./.	./.
chr14	105411260	rs2819425	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,78:32:135:0.578:2	./.	./.	./.
chr14	105411282	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:33:119:0.034:2	./.	0/1:137,7:30:144:0.049:2	./.	./.	./.
chr14	105411302	rs200535803	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:34:175:0.023:2	./.	./.	./.
chr14	105411700	rs4264326	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,112:29:112:1.00:2	0/1:1,52:28:53:0.981:2	0/1:47,45:28:92:0.489:2	0/1:23,22:28:45:0.489:2	0/1:2,145:29:147:0.986:2	0/1:0,70:31:70:1.00:2	0/1:31,43:28:74:0.581:2	./.
chr14	105411781	rs10438247	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:36,5:33:41:0.122:2	./.	0/1:0,136:32:136:1.00:2	0/1:1,112:31:113:0.991:2	0/1:56,83:31:139:0.597:2	0/1:33,45:32:78:0.577:2	0/1:2,179:32:182:0.989:2	0/1:0,108:33:108:1.00:2	0/1:32,61:32:93:0.656:2	./.
chr14	105411957	rs373797895	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,27:30:27:1.00:2	0/1:0,11:28:11:1.00:2	0/1:41,8:29:49:0.163:2	./.	0/1:0,25:29:25:1.00:2	0/1:0,19:30:19:1.00:2	0/1:19,12:31:31:0.387:2	./.
chr14	105411971	rs28737397	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,23:28:23:1.00:2	0/1:0,8:28:8:1.00:2	0/1:37,5:27:42:0.119:2	./.	0/1:0,25:28:25:1.00:2	0/1:0,16:28:16:1.00:2	0/1:23,9:26:32:0.281:2	./.
chr14	105412005	rs28564728	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,15:27:15:1.00:2	0/1:0,7:24:7:1.00:2	0/1:30,4:26:34:0.118:2	0/1:43,5:26:48:0.104:2	0/1:0,25:26:25:1.00:2	0/1:0,12:25:12:1.00:2	0/1:19,9:27:28:0.321:2	./.
chr14	105412009	rs28714612	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,15:26:15:1.00:2	0/1:0,8:25:8:1.00:2	0/1:30,4:26:34:0.118:2	0/1:45,5:25:50:0.100:2	0/1:0,24:26:24:1.00:2	0/1:0,12:26:12:1.00:2	0/1:19,9:25:28:0.321:2	./.
chr14	105412066	rs77154428	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,44:31:45:0.978:2	0/1:2,27:31:29:0.931:2	0/1:31,17:30:48:0.354:2	0/1:53,14:32:67:0.209:2	0/1:0,66:31:66:1.00:2	0/1:0,30:32:30:1.00:2	0/1:29,17:32:46:0.370:2	./.
chr14	105412138	rs200384326	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,16:33:18:0.889:2	0/1:4,7:32:11:0.636:2	./.	0/1:181,6:32:187:0.032:2	0/1:2,23:33:25:0.920:2	0/1:1,7:33:8:0.875:2	./.	./.
chr14	105412163	rs201181175	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:33:7:0.714:2	0/1:2,4:31:6:0.667:2	./.	./.	0/1:3,14:30:17:0.824:2	0/1:1,5:34:6:0.833:2	./.	./.
chr14	105412259	rs2819426	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,63:32:147:0.432:2	0/1:0,3:33:3:1.00:2	./.	./.	./.
chr14	105412260	rs11160826	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,63:32:146:0.432:2	0/1:1,2:32:3:0.667:2	./.	./.	./.
chr14	105412335	rs202104959	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,5:31:19:0.263:2	./.	./.	./.
chr14	105412347	rs55842266	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,4:30:11:0.364:2	./.	./.	0/1:15,7:30:22:0.318:2	./.	./.	./.
chr14	105412363	rs201377363	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,11:32:19:0.579:2	./.	./.	./.	0/1:18,7:32:25:0.280:2	./.	./.	./.
chr14	105412541	rs12433837	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,6:32:78:0.077:2	./.	0/1:3,22:32:25:0.880:2	0/1:0,8:33:8:1.00:2	./.	./.
chr14	105412542	rs12433815	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,6:34:78:0.077:2	./.	0/1:3,22:33:25:0.880:2	0/1:0,8:31:8:1.00:2	./.	./.
chr14	105412554	rs12436986	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,15:33:19:0.789:2	0/1:2,7:32:9:0.778:2	0/1:70,4:32:74:0.054:2	./.	0/1:3,19:30:22:0.864:2	0/1:0,12:31:12:1.00:2	0/1:53,5:34:58:0.086:2	./.
chr14	105412561	rs3000771	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,19:31:23:0.826:2	0/1:2,14:30:16:0.875:2	0/1:75,5:31:82:0.063:2	./.	0/1:3,22:31:25:0.880:2	0/1:0,19:31:19:1.00:2	0/1:51,6:32:57:0.105:2	./.
chr14	105413057	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,5:31:39:0.128:2	./.	./.	./.	./.
chr14	105413058	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,5:32:39:0.128:2	0/1:84,4:31:88:0.045:2	./.	./.	./.
chr14	105413142	rs200865013	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:31:68:0.059:2	./.	./.	./.	./.
chr14	105413143	rs201434975	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:31:68:0.059:2	./.	./.	./.	./.
chr14	105413204	rs2582514	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,93:31:95:0.979:2	0/1:1,86:32:87:0.989:2	0/1:36,58:31:94:0.617:2	0/1:45,67:32:112:0.598:2	0/1:0,176:32:176:1.00:2	0/1:1,129:33:130:0.992:2	0/1:39,39:33:78:0.500:2	./.
chr14	105413223	rs55797226	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,99:31:101:0.980:2	0/1:1,88:31:89:0.989:2	0/1:39,58:31:97:0.598:2	0/1:48,66:32:114:0.579:2	0/1:1,180:31:181:0.994:2	0/1:2,133:32:135:0.985:2	0/1:40,42:32:82:0.512:2	./.
chr14	105413318	rs117998121	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,9:32:17:0.529:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	105413325	rs138287800	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,9:31:17:0.529:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	105413407	rs202022483	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:111,4:32:115:0.035:2	./.	./.	./.	./.	./.	./.
chr14	105413682	rs200358766	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,5:28:131:0.038:2	./.	./.
chr14	105413790	rs11848564	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,189:30:189:1.00:2	0/1:1,185:30:186:0.995:2	0/1:91,93:30:184:0.505:2	./.	0/1:1,186:30:187:0.995:2	0/1:0,152:32:152:1.00:2	0/1:89,69:31:158:0.437:2	./.
chr14	105414238	rs60754080	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,86:30:88:0.977:2	0/1:0,68:30:68:1.00:2	0/1:56,42:30:98:0.429:2	0/1:27,28:30:55:0.509:2	0/1:0,117:31:117:1.00:2	0/1:40,42:30:82:0.512:2	0/1:55,39:30:94:0.415:2	./.
chr14	105414252	rs60106058	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,95:31:97:0.979:2	0/1:1,68:31:69:0.986:2	0/1:50,45:31:95:0.474:2	0/1:25,26:30:51:0.510:2	0/1:0,132:31:132:1.00:2	0/1:45,43:32:88:0.489:2	0/1:62,45:32:107:0.421:2	./.
chr14	105414280	rs2819429	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,41:29:67:0.621:2	0/1:19,29:30:48:0.604:2	0/1:0,11:29:11:1.00:2	0/1:0,102:29:102:1.00:2	0/1:2,92:29:94:0.979:2	0/1:43,49:29:92:0.533:2	0/1:33,23:29:56:0.411:2	0/1:0,170:29:170:1.00:2	0/1:55,49:30:104:0.471:2	0/1:3,105:29:108:0.972:2	0/1:1,67:28:68:0.985:2
chr14	105414282	rs375164356	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,6:32:106:0.057:2	./.	./.
chr14	105414629	rs72702027	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,45:31:46:0.978:2	0/1:0,27:31:27:1.00:2	0/1:30,21:30:51:0.412:2	0/1:21,13:32:34:0.382:2	0/1:2,102:31:104:0.981:2	0/1:0,52:32:52:1.00:2	0/1:27,27:32:54:0.500:2	./.
chr14	105414790	rs2582513	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,106:33:106:1.00:2	0/1:2,68:31:70:0.971:2	0/1:69,69:33:138:0.500:2	0/1:75,47:33:122:0.385:2	0/1:1,162:32:163:0.994:2	0/1:0,98:34:98:1.00:2	0/1:56,58:32:114:0.509:2	./.
chr14	105414810	rs10145032	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,112:33:112:1.00:2	0/1:1,76:32:77:0.987:2	0/1:78,68:33:146:0.466:2	0/1:92,48:33:140:0.343:2	0/1:1,187:33:188:0.995:2	0/1:1,106:33:107:0.991:2	0/1:51,53:31:104:0.510:2	./.
chr14	105415200	rs10145566	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,49:33:51:0.961:2	0/1:0,29:33:29:1.00:2	0/1:53,28:32:81:0.346:2	./.	0/1:1,79:32:80:0.988:2	0/1:0,44:34:44:1.00:2	0/1:28,23:33:51:0.451:2	./.
chr14	105415229	rs10134675	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,27:26:28:0.964:2	0/1:0,14:26:14:1.00:2	0/1:61,15:27:76:0.197:2	./.	0/1:2,35:27:37:0.946:2	0/1:0,22:27:22:1.00:2	0/1:30,15:28:45:0.333:2	./.
chr14	105415250	rs201959909	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:30:49:0.082:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	105415299	rs59107644	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:43,59:29:102:0.578:2	0/1:40,23:30:63:0.365:2	./.	./.	./.	./.	./.	0/1:3,3:30:6:0.500:2	./.	./.	./.
chr14	105415302	rs149220372	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:30:6:0.500:2	./.	./.	./.
chr14	105415352	rs12890949	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,102:29:102:1.00:2	0/1:0,60:29:60:1.00:2	0/1:0,29:29:29:1.00:2	./.	./.	0/1:0,90:30:90:1.00:2	0/1:1,127:30:128:0.992:2	0/1:0,2:30:2:1.00:2	0/1:1,2:32:3:0.667:2	./.	0/1:0,124:29:124:1.00:2
chr14	105415469	rs11846918	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,51:32:69:0.739:2	./.	./.	./.	./.
chr14	105415497	rs201263008	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,19:33:49:0.388:2	./.	./.	./.	./.
chr14	105415551	rs201988473	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,11:33:36:0.306:2	0/1:0,3:32:3:1.00:2	./.	./.	./.
chr14	105415608	rs11850848	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,22:32:40:0.550:2	./.	./.	./.	./.
chr14	105415655	rs11850885	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	0/1:2,4:32:6:0.667:2	0/1:0,3:33:3:1.00:2	./.	./.
chr14	105415662	rs142127908	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:29:6:0.667:2	0/1:0,3:28:3:1.00:2	./.	./.
chr14	105415666	rs150446570	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	./.	./.	0/1:2,6:30:8:0.750:2	0/1:0,3:32:3:1.00:2	./.	./.
chr14	105415745	rs117379881	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,43:33:44:0.977:2	0/1:4,21:31:25:0.840:2	0/1:46,12:33:58:0.207:2	./.	0/1:2,71:32:74:0.973:2	0/1:2,31:33:33:0.939:2	0/1:4,20:31:24:0.833:2	./.
chr14	105415748	rs118171013	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,43:31:43:1.00:2	0/1:4,22:30:26:0.846:2	0/1:48,12:31:60:0.200:2	./.	0/1:3,71:30:74:0.959:2	0/1:0,33:31:33:1.00:2	0/1:3,21:30:24:0.875:2	0/1:22,34:31:56:0.607:2
chr14	105416010	rs2582511	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,72:29:75:0.973:2	0/1:2,58:29:60:0.967:2	0/1:43,43:29:86:0.500:2	0/1:32,26:31:58:0.448:2	0/1:1,119:29:120:0.992:2	0/1:0,72:31:72:1.00:2	0/1:0,34:30:34:1.00:2	./.
chr14	105416220	rs2819435	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:40,29:30:69:0.420:2	0/1:28,18:32:46:0.391:2	0/1:0,10:31:10:1.00:2	./.	./.	0/1:61,43:30:108:0.413:2	./.	./.	./.	0/1:2,52:32:55:0.963:2	0/1:2,99:31:101:0.980:2
chr14	105416223	rs141406015	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:131,7:28:138:0.051:2	./.	0/1:124,9:29:133:0.068:2	0/1:171,7:31:178:0.039:2	./.	./.	./.
chr14	105416232	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,7:29:141:0.050:2	./.	./.	./.	./.	./.	./.	./.
chr14	105416235	rs373194889	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:136,5:32:141:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr14	105416280	rs200758735	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,63:28:158:0.399:2	./.	./.	./.	./.	./.
chr14	105416289	rs201235573	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,8:29:152:0.053:2	./.	./.	./.	./.
chr14	105416323	rs11847209	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,28:32:137:0.204:2	0/1:134,15:33:149:0.101:2	0/1:136,18:31:154:0.117:2	0/1:130,8:31:138:0.058:2	0/1:169,10:33:179:0.056:2	0/1:119,21:33:140:0.150:2	0/1:59,15:31:74:0.203:2	./.
chr14	105416357	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:32:116:0.034:2	./.	./.	./.	./.
chr14	105416367	rs34605366	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,11:23:106:0.104:2	./.	./.	./.	./.	0/1:89,11:22:100:0.110:2	./.	./.
chr14	105416649	rs28593209	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,109:32:111:0.982:2	0/1:3,61:32:64:0.953:2	0/1:48,48:32:96:0.500:2	./.	0/1:2,132:32:135:0.985:2	0/1:1,92:32:93:0.989:2	0/1:0,42:32:42:1.00:2	./.
chr14	105416685	rs2582506	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,10:32:14:0.714:2	0/1:0,108:33:108:1.00:2	0/1:3,61:33:64:0.953:2	0/1:45,53:32:98:0.541:2	0/1:34,29:32:63:0.460:2	0/1:2,140:33:142:0.986:2	0/1:1,93:33:94:0.989:2	0/1:0,46:33:46:1.00:2	./.
chr14	105416784	rs59373922	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,74:30:164:0.451:2	./.	0/1:0,83:30:83:1.00:2
chr14	105416790	rs143480617	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,38:27:92:0.413:2
chr14	105416823	rs2582504	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,75:30:159:0.472:2	./.	./.	./.	./.
chr14	105416918	rs71421895	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,5:29:6:0.833:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	105416959	rs2013462	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,64:30:67:0.955:2	0/1:2,46:31:48:0.958:2	0/1:33,29:30:63:0.468:2	0/1:42,26:29:69:0.382:2	0/1:7,79:30:86:0.919:2	0/1:0,67:31:67:1.00:2	0/1:0,46:31:46:1.00:2	./.
chr14	105416994	rs191772734	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,24:31:48:0.500:2	./.	./.	./.
chr14	105417102	rs2248966	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,92:32:93:0.989:2	0/1:0,58:32:58:1.00:2	0/1:48,37:32:85:0.435:2	0/1:42,37:30:79:0.468:2	0/1:0,101:31:101:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,24:32:24:1.00:2	./.
chr14	105417103	rs61996045	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,91:31:92:0.989:2	0/1:0,57:31:57:1.00:2	0/1:48,38:31:86:0.442:2	./.	0/1:1,100:31:101:0.990:2	0/1:1,55:32:56:0.982:2	0/1:0,24:32:24:1.00:2	./.
chr14	105417147	rs2013445	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,109:29:112:0.973:2	0/1:1,87:29:88:0.989:2	0/1:74,58:29:132:0.439:2	./.	0/1:1,151:28:152:0.993:2	0/1:2,60:30:62:0.968:2	0/1:0,33:28:33:1.00:2	./.
chr14	105417222	rs2013274	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,7:23:12:0.583:2	./.	./.	./.
chr14	105417225	rs2894635	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,6:28:11:0.545:2	./.	./.	./.
chr14	105417228	rs2248960	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,5:30:10:0.500:2	./.	./.	./.
chr14	105417243	rs77111827	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:28:6:0.500:2	0/1:3,4:26:7:0.571:2	./.	./.	0/1:4,5:28:9:0.556:2	0/1:0,4:27:4:1.00:2	./.	./.
chr14	105417252	rs181822513	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,2:35:6:0.333:2	./.	./.	./.	./.	./.	./.	./.
chr14	105417282	rs2819430	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,85:31:161:0.528:2	./.	./.	./.	./.
chr14	105417313	rs80275639	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	0/1:1,2:34:3:0.667:2	./.	./.
chr14	105417396	rs144323040	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,61:30:121:0.504:2	./.	./.	./.	./.
chr14	105417527	rs200038646	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:32:8:0.375:2	./.	./.	./.	./.	./.	./.	./.
chr14	105417581	rs141283979	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,71:31:133:0.534:2	./.	./.	./.	./.
chr14	105417646	rs201359125	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.
chr14	105417699	rs143593141	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.
chr14	105417738	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:35:3:1.00:2	./.
chr14	105417747	rs373120351	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,6:27:6:1.00:2	./.
chr14	105417774	rs2013228	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,5:30:59:0.085:2	./.	./.	0/1:0,15:31:15:1.00:2	./.
chr14	105417837	rs76231332	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,3:25:5:0.600:2	./.	0/1:103,61:27:164:0.372:2	0/1:0,2:28:2:1.00:2	./.	./.	./.
chr14	105417894	rs2819440	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:71,50:32:121:0.413:2	0/1:41,38:32:79:0.481:2	0/1:0,22:32:22:1.00:2	./.	0/1:3,5:33:8:0.625:2	./.	0/1:105,81:32:187:0.435:2	./.	./.	0/1:0,71:32:71:1.00:2	0/1:1,121:32:122:0.992:2
chr14	105418145	rs375277628	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.
chr14	105418155	rs141600524	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,4:33:4:1.00:2	./.	./.	0/1:2,6:33:8:0.750:2	0/1:0,3:34:3:1.00:2	./.	./.
chr14	105418166	rs78116894	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,7:33:8:0.875:2	0/1:0,17:33:17:1.00:2	0/1:76,7:29:83:0.084:2	0/1:99,5:33:104:0.048:2	0/1:2,32:32:34:0.941:2	0/1:0,10:31:10:1.00:2	./.	./.
chr14	105418170	rs200879546	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,5:33:100:0.050:2	./.	./.	./.	./.
chr14	105418194	rs78447535	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:31:10:1.00:2	0/1:0,39:31:39:1.00:2	0/1:83,15:32:98:0.153:2	./.	0/1:0,63:31:63:1.00:2	0/1:0,15:27:15:1.00:2	0/1:50,8:32:58:0.138:2	./.
chr14	105418260	rs56330864	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,11:31:17:0.647:2	0/1:1,38:32:39:0.974:2	0/1:1,57:31:58:0.983:2	0/1:61,24:31:85:0.282:2	./.	0/1:2,110:31:112:0.982:2	0/1:0,31:32:31:1.00:2	0/1:49,26:32:75:0.347:2	./.
chr14	105418264	rs55650155	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,11:30:16:0.688:2	0/1:1,36:28:37:0.973:2	0/1:1,55:29:56:0.982:2	0/1:56,23:29:79:0.291:2	./.	0/1:2,108:30:110:0.982:2	0/1:0,31:29:31:1.00:2	0/1:49,24:29:73:0.329:2	./.
chr14	105418275	rs2819441	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,4:27:15:0.267:2	0/1:1,43:30:44:0.977:2	0/1:48,9:27:57:0.158:2	0/1:53,19:27:73:0.264:2	./.	0/1:99,18:30:117:0.154:2	0/1:1,32:29:33:0.970:2	0/1:46,22:29:68:0.324:2	./.
chr14	105418344	rs55791176	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,60:30:60:1.00:2	0/1:1,37:29:38:0.974:2	0/1:39,33:30:72:0.458:2	0/1:31,19:29:50:0.380:2	0/1:0,132:30:132:1.00:2	0/1:0,54:30:54:1.00:2	0/1:30,18:30:48:0.375:2	./.
chr14	105418391	rs11625007	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,65:31:65:1.00:2	0/1:0,46:30:46:1.00:2	0/1:42,33:31:75:0.440:2	0/1:23,16:30:39:0.410:2	0/1:1,124:31:125:0.992:2	0/1:0,57:31:57:1.00:2	0/1:29,25:32:54:0.463:2	./.
chr14	105418481	rs200172350	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,6:31:30:0.200:2	./.	./.	./.	./.
chr14	105418502	rs201268922	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:33:29:0.138:2	./.	./.	./.	./.
chr14	105418504	rs151013711	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,14:32:29:0.483:2	./.	./.	./.	./.
chr14	105418638	rs78353106	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,18:29:43:0.419:2	./.	./.	./.	./.
chr14	105419202	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:136,8:32:144:0.056:2	0/1:107,10:32:117:0.085:2	./.	0/1:101,5:32:106:0.047:2	0/1:179,10:31:189:0.053:2	./.	0/1:108,6:32:114:0.053:2	./.
chr14	105419234	rs74090129	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,50:29:121:0.413:2	./.	./.	./.	./.
chr14	105419295	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:33:100:0.040:2
chr14	105419347	rs199658132	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:155,4:32:159:0.025:2	./.	./.	0/1:128,5:33:133:0.038:2	0/1:181,9:30:190:0.047:2	./.	./.	./.
chr14	105419568	rs78110724	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,7:26:57:0.123:2	./.	./.	./.	./.
chr14	105419606	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:33:74:0.054:2	./.
chr14	105420215	rs2278607	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,72:30:162:0.444:2	./.	./.	./.	./.
chr14	105420927	rs879210	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:32:8:0.375:2	0/1:1,68:32:69:0.986:2	0/1:1,68:32:69:0.986:2	0/1:56,36:32:92:0.391:2	0/1:73,4:34:77:0.052:2	0/1:37,36:32:73:0.493:2	0/1:0,68:33:68:1.00:2	0/1:35,19:31:54:0.352:2	./.
chr14	105421050	rs879209	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,32:33:33:0.970:2	0/1:0,30:32:30:1.00:2	0/1:19,18:32:37:0.486:2	./.	0/1:20,17:33:37:0.459:2	0/1:0,35:33:35:1.00:2	0/1:21,15:33:36:0.417:2	./.
chr14	105452825	rs148713230	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,10:27:23:0.435:2	0/1:7,9:27:16:0.563:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	105461050	rs34350817	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,10:33:31:0.323:2	0/1:32,25:32:57:0.439:2	./.
chr14	105461067	rs894039	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,20:31:45:0.444:2	0/1:13,9:32:22:0.409:2	./.	0/1:1,45:31:46:0.978:2	0/1:0,35:30:35:1.00:2	0/1:0,49:30:49:1.00:2	0/1:2,40:31:42:0.952:2	0/1:0,62:31:62:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,58:31:58:1.00:2	./.
chr14	105477613	rs7145565	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,10:29:19:0.526:2	0/1:6,3:27:9:0.333:2	./.	./.	./.	0/1:19,11:29:30:0.367:2	0/1:12,7:28:19:0.368:2	./.	./.	./.	./.
chr14	105478102	rs3803294	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,88:31:89:0.989:2	0/1:4,157:31:161:0.975:2	0/1:44,41:31:85:0.482:2	./.	0/1:1,124:31:125:0.992:2	0/1:0,65:32:65:1.00:2	0/1:0,49:31:49:1.00:2	./.
chr14	105609335	rs10149229	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2
chr14	105611282	rs2272591	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,10:29:10:1.00:2	0/1:0,10:30:10:1.00:2	0/1:4,3:31:7:0.429:2	0/1:0,7:31:7:1.00:2	0/1:14,6:31:20:0.300:2	0/1:0,15:27:15:1.00:2	0/1:7,4:29:11:0.364:2	0/1:16,5:29:21:0.238:2	0/1:10,6:31:16:0.375:2	0/1:10,5:30:15:0.333:2	./.
chr14	105612151	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,7:21:110:0.064:2	0/1:64,9:18:73:0.123:2	./.	./.	./.	./.
chr14	105614498	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:34:46:0.087:2	./.	./.
chr14	105614675	rs200164540	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,8:16:50:0.160:2	./.	./.	./.	./.	./.	./.	./.
chr14	105615648	rs9972231	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,29:30:75:0.387:2	./.	./.	./.	./.	0/1:30,30:31:60:0.500:2	./.
chr14	105617042	rs1057744	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,19:30:19:1.00:2	0/1:0,20:31:20:1.00:2	./.	0/1:0,16:30:16:1.00:2	0/1:12,11:31:23:0.478:2	0/1:0,39:30:39:1.00:2	0/1:4,12:31:16:0.750:2	0/1:12,12:30:24:0.500:2	0/1:4,16:32:20:0.800:2	./.	0/1:2,4:32:6:0.667:2
chr14	105634305	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2
chr14	105688082	rs28406206	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:7,15:32:22:0.682:2	0/1:4,8:33:12:0.667:2	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:33:10:0.300:2	./.
chr14	105695168	rs140779507	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,59:32:124:0.476:2	./.	./.
chr14	105707747	rs144658695	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,11:33:23:0.478:2
chr14	105715515	rs2816605	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	0/1:2,6:30:8:0.750:2	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.	./.
chr14	105716034	rs2816606	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,40:32:40:1.00:2	0/1:0,27:32:27:1.00:2	./.	./.	0/1:24,21:32:45:0.467:2	./.	./.	0/1:28,35:31:63:0.556:2	0/1:0,62:32:62:1.00:2	./.	./.
chr14	105717279	rs4677	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,83:29:84:0.988:2	0/1:0,44:29:44:1.00:2	./.	./.	0/1:45,47:28:92:0.511:2	./.	./.	0/1:44,56:29:100:0.560:2	0/1:0,125:29:125:1.00:2	./.	./.
chr14	105849191	rs143691594	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,46:31:84:0.548:2	./.	./.	./.
chr14	105850736	rs143071112	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,17:30:32:0.531:2	./.	./.	./.
chr14	105859013	rs150343495	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,37:30:71:0.521:2	./.	./.	./.	./.	./.
chr14	105916420	rs4983409	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:30:50:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,10:28:10:1.00:2	0/1:0,83:30:83:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,109:29:109:1.00:2	0/1:0,93:29:93:1.00:2	0/1:0,77:30:77:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,57:29:57:1.00:2	0/1:0,90:30:90:1.00:2
chr14	105930406	rs4983413	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,46:30:122:0.377:2	./.	./.	0/1:79,61:31:140:0.436:2	./.	0/1:0,84:30:84:1.00:2
chr14	105935824	rs13707	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:31:42:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,95:31:95:1.00:2	0/1:0,88:30:88:1.00:2	0/1:0,106:31:106:1.00:2	0/1:0,80:31:81:1.00:2	0/1:0,61:31:62:1.00:2	0/1:0,49:30:49:1.00:2	0/1:1,44:31:45:0.978:2
chr14	105936288	rs149260021	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,37:30:90:0.411:2	./.	./.	./.	./.	./.	./.	./.
chr14	105944693	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2
chr14	105953595	rs7140395	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,5:32:5:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,30:33:30:1.00:2	0/1:1,29:31:30:0.967:2	0/1:2,27:32:29:0.931:2	0/1:0,14:31:14:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,10:30:10:1.00:2
chr14	105954682	rs1128308	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,27:29:59:0.458:2	./.	./.	./.	./.	./.
chr14	105954705	rs55633823	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:16,14:31:30:0.467:2	0/1:9,5:30:14:0.357:2	./.	0/1:19,27:29:46:0.587:2	./.	./.	0/1:36,19:30:55:0.345:2	0/1:19,26:30:45:0.578:2	./.	./.	./.
chr14	105954739	rs7145303	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,16:28:29:0.552:2	./.	./.	./.	./.	./.
chr14	105962234	rs7494350	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:30:24:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,24:30:24:1.00:2	0/1:2,28:29:30:0.933:2	0/1:0,25:30:25:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,27:31:27:1.00:2	0/1:1,17:31:18:0.944:2	0/1:0,36:30:36:1.00:2
chr14	105962369	rs7494717	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:28:33:1.00:2	0/1:0,16:28:16:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,54:29:54:1.00:2	0/1:0,60:29:60:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,57:30:57:1.00:2
chr14	105965102	rs34137879	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,48:31:86:0.558:2	./.	./.	./.
chr14	105996341	rs28662250	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:33:8:0.500:2	./.	./.	./.	./.	./.	./.	0/1:6,6:33:12:0.500:2	./.
chr14	106050512	.	C	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:162,34:32:196:0.173:2	0/1:145,31:32:176:0.176:2	0/1:33,9:32:42:0.214:2	0/1:163,30:31:193:0.155:2	0/1:158,34:32:192:0.177:2	0/1:147,41:32:188:0.218:2	0/1:152,42:32:194:0.216:2	0/1:160,35:33:195:0.179:2	0/1:156,37:33:193:0.192:2	0/1:128,61:32:189:0.323:2	0/1:153,39:31:192:0.203:2
chr14	106050696	.	C	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:150,10:32:161:0.063:2	0/1:96,23:33:119:0.193:2	./.	0/1:179,16:32:195:0.082:2	0/1:178,16:31:194:0.082:2	0/1:181,13:32:194:0.067:2	0/1:174,16:31:190:0.084:2	0/1:164,14:32:178:0.079:2	0/1:184,8:32:192:0.042:2	0/1:152,12:32:164:0.073:2	0/1:141,6:33:147:0.041:2
chr14	106053409	rs11628783	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	0/1:1,4:30:5:0.800:2	./.	./.	./.
chr14	106053430	rs11628780	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	0/1:1,4:29:5:0.800:2	./.	./.	./.
chr14	106053454	rs11160853	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.	./.	./.	0/1:1,4:34:5:0.800:2	./.	./.	./.
chr14	106053461	rs11970	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,4:33:4:1.00:2	0/1:0,2:32:2:1.00:2	0/1:1,5:33:6:0.833:2	./.	0/1:2,2:34:5:0.500:2	./.	./.
chr14	106053559	rs201836307	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,5:31:96:0.052:2	./.	./.
chr14	106054108	rs12105	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:67,76:32:143:0.531:2	0/1:38,29:31:67:0.433:2	./.	0/1:96,63:32:159:0.396:2	./.	./.	./.	./.	./.	./.	0/1:64,83:33:147:0.565:2
chr14	106054428	rs9972103	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:31:44:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,47:31:47:1.00:2	0/1:2,47:31:49:0.959:2	0/1:0,47:31:47:1.00:2	0/1:0,32:31:32:1.00:2	0/1:1,57:31:58:0.983:2	0/1:0,59:33:59:1.00:2	0/1:1,40:32:41:0.976:2	0/1:0,32:32:32:1.00:2
chr14	106054456	rs61984162	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:32:76:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,92:32:92:1.00:2	0/1:2,96:31:98:0.980:2	0/1:0,89:31:89:1.00:2	0/1:0,94:31:94:1.00:2	0/1:1,133:32:134:0.993:2	0/1:0,108:33:108:1.00:2	0/1:1,71:32:72:0.986:2	0/1:0,59:31:59:1.00:2
chr14	106066454	rs4983454	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:29:79:1.00:2	0/1:0,45:29:45:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,122:29:122:1.00:2	0/1:0,178:29:179:1.00:2	0/1:0,133:29:133:1.00:2	0/1:1,154:29:155:0.994:2	0/1:4,179:30:183:0.978:2	0/1:2,129:30:131:0.985:2	0/1:0,96:30:96:1.00:2	0/1:0,77:29:77:1.00:2
chr14	106066534	rs373675415	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:68,5:29:73:0.068:2	./.	./.	0/1:93,8:30:101:0.079:2	./.	0/1:121,7:30:128:0.055:2	0/1:118,14:31:132:0.106:2	./.	0/1:102,17:32:119:0.143:2	./.	./.
chr14	106066581	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:46,6:33:52:0.115:2	0/1:45,6:32:51:0.118:2	./.	0/1:54,7:30:61:0.115:2	./.	0/1:74,7:29:81:0.086:2	0/1:39,9:32:48:0.188:2	./.	0/1:39,12:31:51:0.235:2	./.	./.
chr14	106066686	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,6:33:14:0.429:2	./.	./.	./.	./.	./.
chr14	106066842	rs375625414	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:28:42:0.095:2	./.	./.	./.
chr14	106067028	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,12:30:141:0.085:2	./.	./.	./.
chr14	106067131	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,6:31:106:0.057:2	./.	./.	./.
chr14	106090846	rs56133431	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:136,51:30:187:0.273:2	0/1:63,45:31:108:0.417:2	./.	0/1:110,81:30:191:0.424:2	./.	./.	0/1:151,43:31:194:0.222:2	./.	0/1:109,85:32:194:0.438:2	0/1:136,55:31:192:0.288:2	0/1:141,48:31:189:0.254:2
chr14	106090927	rs8010914	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,178:30:178:1.00:2	0/1:2,182:31:184:0.989:2	0/1:0,47:30:47:1.00:2	0/1:48,144:30:192:0.750:2	0/1:5,174:30:179:0.972:2	0/1:8,174:30:182:0.956:2	0/1:3,186:30:189:0.984:2	0/1:4,189:29:193:0.979:2	0/1:3,185:31:188:0.984:2	0/1:0,188:30:188:1.00:2	0/1:0,185:30:185:1.00:2
chr14	106090931	rs77498506	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:161,30:33:191:0.157:2	0/1:191,4:32:195:0.021:2	./.	./.	0/1:194,4:35:198:0.020:2	./.	./.	./.
chr14	106090968	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:174,19:31:193:0.098:2	0/1:183,11:29:194:0.057:2	./.	0/1:180,16:32:196:0.082:2	./.	0/1:193,5:29:198:0.025:2	0/1:179,6:31:185:0.032:2
chr14	106090975	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,6:29:192:0.031:2	./.	0/1:187,8:25:195:0.041:2	0/1:186,6:25:192:0.031:2	./.	0/1:181,8:27:189:0.042:2
chr14	106090981	rs375640130	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,7:31:193:0.036:2	./.	0/1:185,7:29:192:0.036:2	./.	./.	./.
chr14	106091038	rs17841088	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:187,5:31:192:0.026:2	0/1:182,7:29:189:0.037:2	./.	./.	./.	0/1:181,5:31:186:0.027:2	0/1:192,5:32:197:0.025:2	./.	0/1:189,4:32:193:0.021:2	./.	./.
chr14	106091049	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,62:29:195:0.318:2
chr14	106091093	rs201617483	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:179,8:29:187:0.043:2	0/1:135,10:27:145:0.069:2	./.	./.	0/1:171,12:26:183:0.066:2	0/1:165,12:26:177:0.068:2	0/1:175,10:27:185:0.054:2	0/1:180,10:25:190:0.053:2	./.	./.	./.
chr14	106091329	rs8015545	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:137,50:29:187:0.267:2	0/1:100,45:29:145:0.310:2	0/1:17,5:30:22:0.227:2	0/1:108,84:30:192:0.438:2	./.	./.	0/1:134,61:30:195:0.313:2	./.	0/1:86,97:30:183:0.530:2	0/1:122,57:29:179:0.318:2	0/1:131,61:30:192:0.318:2
chr14	106091355	rs376761875	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:164,10:28:174:0.057:2	./.	./.	./.	0/1:191,5:30:196:0.026:2	0/1:181,5:27:186:0.027:2	./.	./.	./.	./.	./.
chr14	106091504	rs1042306	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:73,22:32:95:0.232:2	0/1:35,24:31:59:0.407:2	./.	0/1:77,84:32:161:0.522:2	./.	./.	0/1:75,49:32:124:0.395:2	./.	0/1:71,64:33:135:0.474:2	0/1:93,32:31:125:0.256:2	0/1:87,37:31:124:0.298:2
chr14	106091555	rs35035896	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:50,19:31:69:0.275:2	0/1:33,11:31:44:0.250:2	./.	0/1:48,53:31:101:0.525:2	./.	./.	0/1:47,23:30:70:0.329:2	./.	0/1:50,34:31:84:0.405:2	0/1:46,16:30:63:0.258:2	0/1:41,28:31:69:0.406:2
chr14	106091697	rs56210451	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:107,54:30:161:0.335:2	0/1:60,17:29:77:0.221:2	./.	0/1:104,78:30:182:0.429:2	./.	./.	0/1:127,51:30:178:0.287:2	./.	0/1:125,70:30:195:0.359:2	0/1:100,54:29:154:0.351:2	0/1:132,57:30:189:0.302:2
chr14	106092152	rs10137020	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:79,99:32:179:0.556:2	0/1:56,90:32:146:0.616:2	0/1:19,20:31:39:0.513:2	0/1:1,176:32:177:0.994:2	./.	0/1:124,70:32:194:0.361:2	0/1:1,173:32:174:0.994:2	./.	0/1:0,182:33:182:1.00:2	0/1:87,104:33:191:0.545:2	0/1:82,107:32:189:0.566:2
chr14	106092335	rs28574945	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,16:25:49:0.327:2	0/1:11,11:25:22:0.500:2	./.	0/1:1,38:26:39:0.974:2	0/1:46,4:28:50:0.080:2	0/1:34,14:26:48:0.292:2	0/1:1,16:27:17:0.941:2	./.	0/1:0,26:27:26:1.00:2	0/1:18,19:25:37:0.514:2	0/1:9,8:25:17:0.471:2
chr14	106092383	rs12434110	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:4,19:31:23:0.826:2	0/1:5,8:30:13:0.615:2	0/1:0,2:30:2:1.00:2	./.	0/1:0,22:30:22:1.00:2	0/1:1,19:31:20:0.950:2	./.	./.	./.	0/1:3,6:32:9:0.667:2	0/1:0,8:29:8:1.00:2
chr14	106109552	rs57885569	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:88,15:30:103:0.146:2	0/1:66,9:32:75:0.120:2	./.	0/1:144,33:32:177:0.186:2	0/1:116,4:31:120:0.033:2	0/1:151,6:31:157:0.038:2	0/1:117,32:30:149:0.215:2	0/1:172,18:30:190:0.095:2	0/1:141,32:32:174:0.185:2	./.	0/1:111,8:29:119:0.067:2
chr14	106109573	rs28371022	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:67,85:31:152:0.559:2	0/1:34,64:30:98:0.653:2	0/1:14,21:31:35:0.600:2	0/1:146,42:30:188:0.223:2	0/1:0,174:30:175:1.00:2	0/1:72,113:31:185:0.611:2	0/1:140,50:30:191:0.263:2	0/1:5,184:31:189:0.974:2	0/1:140,42:31:182:0.231:2	0/1:80,82:31:164:0.506:2	0/1:68,87:31:155:0.561:2
chr14	106109629	.	G	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:174,15:33:189:0.079:2	0/1:186,10:32:196:0.051:2	0/1:67,6:32:73:0.082:2	0/1:165,21:33:186:0.113:2	./.	0/1:185,7:33:192:0.036:2	0/1:168,15:32:183:0.082:2	0/1:180,13:32:193:0.067:2	0/1:153,23:31:176:0.131:2	0/1:171,16:34:187:0.086:2	0/1:179,9:30:188:0.048:2
chr14	106109663	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:180,8:30:188:0.043:2	0/1:178,11:31:190:0.058:2	0/1:78,7:31:85:0.082:2	0/1:194,5:31:199:0.025:2	./.	./.	0/1:187,7:28:194:0.036:2	./.	./.	./.	0/1:181,6:30:187:0.032:2
chr14	106109683	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:185,5:32:190:0.026:2	./.	0/1:69,6:31:75:0.080:2	0/1:181,13:30:194:0.067:2	./.	./.	0/1:189,7:32:196:0.036:2	0/1:187,6:28:193:0.031:2	0/1:177,13:32:191:0.068:2	0/1:189,5:32:194:0.026:2	./.
chr14	106109702	rs1049810	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:60,5:22:66:0.077:2	0/1:169,10:25:182:0.056:2	0/1:13,132:28:146:0.910:2	./.	./.	0/1:169,6:26:179:0.034:2	0/1:173,9:26:188:0.049:2	./.	./.
chr14	106109752	rs4983499	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,162:28:162:1.00:2	0/1:1,157:28:158:0.994:2	0/1:0,48:29:48:1.00:2	0/1:0,182:29:182:1.00:2	0/1:0,153:29:153:1.00:2	0/1:0,167:28:167:1.00:2	0/1:0,164:28:164:1.00:2	0/1:2,167:28:169:0.988:2	0/1:0,191:29:191:1.00:2	0/1:1,160:29:161:0.994:2	0/1:0,169:29:169:1.00:2
chr14	106109763	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:191,5:30:196:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr14	106109765	rs201684715	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:154,11:31:165:0.067:2	0/1:150,12:32:162:0.074:2	0/1:45,6:31:51:0.118:2	0/1:178,17:28:195:0.087:2	0/1:176,18:32:194:0.093:2	0/1:187,9:31:196:0.046:2	0/1:180,18:31:198:0.091:2	0/1:185,5:31:190:0.026:2	0/1:168,22:31:191:0.116:2	./.	0/1:170,5:32:175:0.029:2
chr14	106110036	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:35:189:0.021:2	./.	./.
chr14	106110057	rs11160859	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:81,75:32:156:0.481:2	0/1:46,40:32:86:0.465:2	0/1:14,18:31:32:0.563:2	./.	0/1:1,175:31:176:0.994:2	0/1:82,101:31:183:0.552:2	./.	0/1:3,182:31:185:0.984:2	./.	0/1:82,98:31:181:0.544:2	0/1:91,74:31:165:0.448:2
chr14	106110137	rs8009156	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,68:32:139:0.489:2	0/1:44,25:31:69:0.362:2	0/1:7,15:29:22:0.682:2	0/1:6,171:31:177:0.966:2	./.	0/1:95,82:31:177:0.463:2	0/1:6,174:31:180:0.967:2	./.	0/1:3,158:32:161:0.981:2	0/1:88,76:32:164:0.463:2	0/1:68,79:31:147:0.537:2
chr14	106110177	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:162,5:32:167:0.030:2	./.	./.	./.	./.	0/1:129,4:34:133:0.030:2	./.	./.
chr14	106110914	rs11627594	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,71:30:172:0.413:2	0/1:53,84:31:138:0.613:2	0/1:18,17:30:35:0.486:2	0/1:1,149:30:150:0.993:2	./.	0/1:88,85:31:173:0.491:2	0/1:4,186:31:190:0.979:2	./.	0/1:1,156:32:157:0.994:2	0/1:84,89:31:173:0.514:2	0/1:50,76:31:126:0.603:2
chr14	106110966	rs11557955	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:58,52:32:110:0.473:2	0/1:45,36:32:81:0.444:2	0/1:7,7:33:14:0.500:2	./.	0/1:1,164:31:165:0.994:2	0/1:104,84:31:188:0.447:2	./.	0/1:2,177:32:179:0.989:2	./.	0/1:85,63:32:148:0.426:2	0/1:63,32:32:95:0.337:2
chr14	106110993	rs61983197	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:90,8:33:98:0.082:2	0/1:64,4:32:68:0.059:2	./.	0/1:129,20:33:149:0.134:2	./.	0/1:157,8:31:165:0.048:2	./.	./.	0/1:110,20:34:130:0.154:2	0/1:123,11:30:134:0.082:2	0/1:69,7:32:76:0.092:2
chr14	106111107	rs199678915	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,7:25:24:0.292:2	./.	./.	./.	./.
chr14	106170930	rs146575147	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,143:33:155:0.923:2	0/1:11,84:32:95:0.884:2	0/1:5,25:33:30:0.833:2	0/1:14,108:33:122:0.885:2	0/1:18,105:31:123:0.854:2	0/1:12,118:32:130:0.908:2	0/1:18,109:33:127:0.858:2	0/1:11,121:32:132:0.917:2	0/1:14,119:33:133:0.895:2	0/1:22,125:33:147:0.850:2	0/1:23,107:33:130:0.823:2
chr14	106173790	rs17349690	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,51:30:109:0.468:2	0/1:52,46:30:98:0.469:2	0/1:17,15:30:32:0.469:2	0/1:71,66:30:137:0.482:2	./.	0/1:82,28:29:110:0.255:2	0/1:25,17:29:42:0.405:2	0/1:73,19:30:92:0.207:2	0/1:40,57:31:97:0.588:2	0/1:64,23:31:87:0.264:2	0/1:45,35:30:80:0.438:2
chr14	106173808	rs371291470	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,51:29:90:0.567:2	0/1:32,37:30:69:0.536:2	0/1:12,14:28:26:0.538:2	0/1:54,43:29:97:0.443:2	0/1:0,51:29:51:1.00:2	0/1:21,60:29:81:0.741:2	0/1:11,8:30:19:0.421:2	0/1:16,41:30:57:0.719:2	0/1:49,31:30:80:0.388:2	0/1:16,45:30:61:0.738:2	0/1:21,23:30:44:0.523:2
chr14	106174205	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:34:181:0.022:2	./.	./.
chr14	106174261	rs1407	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,180:32:182:0.989:2	0/1:107,86:32:193:0.446:2	./.	0/1:190,5:32:195:0.026:2	./.	0/1:51,80:32:131:0.611:2	./.
chr14	106174434	rs1128899	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,3:31:35:0.086:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106174767	rs1128862	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:133,11:30:144:0.076:2	0/1:69,5:31:74:0.068:2	./.	0/1:181,10:31:191:0.052:2	0/1:166,22:31:188:0.117:2	0/1:165,20:31:185:0.108:2	0/1:115,14:30:131:0.109:2	0/1:168,21:30:189:0.111:2	0/1:173,5:33:178:0.028:2	0/1:120,11:29:131:0.084:2	0/1:79,6:32:85:0.071:2
chr14	106174770	rs3210508	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:134,10:32:144:0.069:2	0/1:70,5:31:75:0.067:2	./.	0/1:181,11:30:192:0.057:2	0/1:174,18:30:192:0.094:2	0/1:169,19:32:188:0.101:2	0/1:118,14:31:132:0.106:2	0/1:174,21:31:195:0.108:2	0/1:183,5:33:188:0.027:2	0/1:127,8:30:135:0.059:2	0/1:79,5:32:84:0.060:2
chr14	106206414	rs199644495	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,5:31:188:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106206438	rs56076154	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:189,4:33:193:0.021:2	0/1:168,12:33:180:0.067:2	./.	0/1:185,4:33:189:0.021:2	./.	0/1:183,7:32:190:0.037:2	./.	./.	0/1:181,8:33:189:0.042:2	0/1:183,6:33:189:0.032:2	0/1:180,8:29:188:0.043:2
chr14	106206469	.	C	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:182,7:33:190:0.037:2	0/1:174,9:32:183:0.049:2	./.	0/1:168,11:32:179:0.061:2	./.	0/1:174,8:32:182:0.044:2	0/1:182,5:31:187:0.027:2	./.	0/1:176,10:33:186:0.054:2	0/1:183,9:32:192:0.047:2	0/1:154,9:30:164:0.055:2
chr14	106207822	rs12879979	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:68,34:31:102:0.333:2	0/1:33,27:31:61:0.450:2	0/1:11,9:32:20:0.450:2	0/1:117,57:31:174:0.328:2	0/1:174,16:28:190:0.084:2	0/1:164,24:31:188:0.128:2	0/1:129,48:31:177:0.271:2	0/1:160,24:31:184:0.130:2	0/1:121,63:32:184:0.342:2	0/1:104,12:31:116:0.103:2	0/1:96,20:30:116:0.172:2
chr14	106207843	rs28562334	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,95:30:129:0.736:2	0/1:20,61:31:81:0.753:2	0/1:2,19:31:21:0.905:2	0/1:97,88:31:185:0.476:2	0/1:0,185:30:185:1.00:2	0/1:51,134:30:185:0.724:2	0/1:120,66:31:186:0.355:2	0/1:12,170:30:182:0.934:2	0/1:108,76:31:184:0.413:2	0/1:46,106:31:152:0.697:2	0/1:56,80:30:136:0.588:2
chr14	106207899	.	G	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:175,16:32:191:0.084:2	0/1:133,14:33:148:0.095:2	0/1:31,10:32:41:0.244:2	0/1:171,16:32:187:0.086:2	./.	0/1:177,13:32:190:0.068:2	0/1:161,22:32:183:0.120:2	0/1:186,13:31:199:0.065:2	0/1:164,13:34:177:0.073:2	0/1:174,16:32:190:0.084:2	0/1:156,20:32:176:0.114:2
chr14	106207933	rs17841087	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,139:31:187:0.743:2	0/1:28,127:31:155:0.819:2	0/1:15,34:30:49:0.694:2	0/1:52,140:30:192:0.729:2	0/1:170,23:32:193:0.119:2	0/1:122,69:30:191:0.361:2	0/1:47,146:30:193:0.756:2	0/1:138,54:31:192:0.281:2	0/1:31,156:31:187:0.834:2	0/1:162,26:31:188:0.138:2	0/1:49,126:31:175:0.720:2
chr14	106207953	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:177,5:33:182:0.027:2	0/1:173,7:31:180:0.039:2	0/1:48,6:27:54:0.111:2	0/1:184,9:32:193:0.047:2	./.	0/1:184,10:31:194:0.052:2	0/1:179,12:31:191:0.063:2	0/1:189,7:31:196:0.036:2	0/1:178,5:33:183:0.027:2	0/1:170,6:32:176:0.034:2	0/1:160,12:30:172:0.070:2
chr14	106207965	rs12431757	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:178,5:32:183:0.027:2	0/1:47,4:32:51:0.078:2	0/1:183,8:32:191:0.042:2	0/1:126,70:32:196:0.357:2	0/1:179,9:31:188:0.048:2	0/1:185,9:30:194:0.046:2	0/1:183,13:30:196:0.066:2	0/1:179,4:33:183:0.022:2	0/1:179,6:33:185:0.032:2	0/1:152,6:31:158:0.038:2
chr14	106207978	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,6:30:193:0.031:2	./.	./.	./.
chr14	106208002	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,45:30:183:0.246:2	./.	./.	./.	./.
chr14	106208003	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,45:33:180:0.250:2	./.	./.	./.	./.
chr14	106208035	rs58566624	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,5:32:190:0.026:2	0/1:136,16:30:152:0.105:2	./.	./.	./.	./.	./.	./.
chr14	106208082	rs11621259	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,106:31:106:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,11:31:11:1.00:2	0/1:1,123:30:124:0.992:2	0/1:77,45:30:122:0.369:2	0/1:84,53:29:137:0.387:2	0/1:2,76:30:78:0.974:2	0/1:104,44:30:148:0.297:2	0/1:0,112:31:112:1.00:2	0/1:70,19:32:89:0.213:2	0/1:2,47:30:49:0.959:2
chr14	106208086	rs1045853	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,104:32:104:1.00:2	0/1:0,63:33:63:1.00:2	0/1:0,12:32:12:1.00:2	0/1:1,123:32:124:0.992:2	0/1:78,47:31:125:0.376:2	0/1:82,52:31:134:0.388:2	0/1:2,78:32:80:0.975:2	0/1:104,46:31:150:0.307:2	0/1:0,107:33:107:1.00:2	0/1:71,17:33:88:0.193:2	0/1:2,43:32:45:0.956:2
chr14	106209119	rs1071803	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,184:33:185:1.00:2	0/1:1,120:32:121:0.992:2	0/1:0,36:32:36:1.00:2	0/1:1,191:33:192:0.995:2	0/1:111,86:32:197:0.437:2	0/1:95,93:33:188:0.495:2	0/1:2,187:33:190:0.989:2	0/1:119,80:32:199:0.402:2	0/1:0,192:34:192:1.00:2	0/1:94,30:32:124:0.242:2	0/1:0,78:33:78:1.00:2
chr14	106209340	rs11552998	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:28:52:1.00:2	0/1:0,32:27:32:1.00:2	0/1:0,5:28:5:1.00:2	0/1:0,82:28:82:1.00:2	0/1:0,25:28:25:1.00:2	0/1:0,54:28:54:1.00:2	0/1:0,31:28:31:1.00:2	0/1:0,41:28:41:1.00:2	0/1:0,51:27:51:1.00:2	0/1:0,14:25:14:1.00:2	0/1:0,10:27:10:1.00:2
chr14	106209362	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,3:32:11:0.273:2
chr14	106209368	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:32:11:0.364:2
chr14	106209373	rs17850094	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:29:11:0.364:2
chr14	106232253	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,53:32:83:0.639:2	./.	./.	./.	./.
chr14	106234188	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:173,11:34:184:0.060:2	0/1:159,11:32:170:0.065:2	./.	0/1:189,4:33:193:0.021:2	./.	./.	./.	./.	0/1:177,7:34:185:0.038:2	0/1:173,8:29:182:0.044:2	0/1:172,12:28:184:0.065:2
chr14	106234219	.	C	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:166,4:33:170:0.024:2	./.	0/1:177,12:33:189:0.063:2	./.	./.	0/1:182,10:33:192:0.052:2	./.	0/1:178,8:34:186:0.043:2	./.	0/1:152,9:33:161:0.056:2
chr14	106235586	rs74093864	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:60,4:31:64:0.063:2	./.	0/1:115,21:31:136:0.154:2	./.	./.	./.	0/1:172,7:30:179:0.039:2	0/1:61,14:31:75:0.187:2	./.	0/1:45,10:31:55:0.182:2
chr14	106235611	rs1051112	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:174,20:26:194:0.103:2	0/1:81,88:29:169:0.521:2	0/1:88,96:29:184:0.522:2	0/1:130,6:30:136:0.044:2	0/1:88,92:29:180:0.511:2	0/1:99,12:29:112:0.108:2	0/1:34,31:29:66:0.477:2	0/1:65,12:31:77:0.156:2
chr14	106235614	rs4042056	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:176,18:29:194:0.093:2	0/1:166,15:29:183:0.083:2	0/1:184,14:31:198:0.071:2	./.	0/1:166,16:31:182:0.088:2	0/1:107,12:32:119:0.101:2	0/1:61,13:31:74:0.176:2	0/1:70,10:30:81:0.125:2
chr14	106235654	rs79545032	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,6:25:190:0.032:2	./.	0/1:184,5:28:189:0.026:2	./.	./.	./.
chr14	106235697	rs13050	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,9:30:197:0.046:2	./.	./.	./.	./.
chr14	106235729	rs139413052	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,14:31:196:0.071:2	./.	./.	./.	./.
chr14	106235742	rs149653267	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,18:29:197:0.091:2	./.	./.	./.	./.
chr14	106235766	rs78376194	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,65:30:174:0.374:2	0/1:91,76:30:167:0.455:2	./.	0/1:113,57:30:170:0.335:2	./.	0/1:53,50:30:103:0.485:2	./.
chr14	106235767	rs77307099	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,65:31:174:0.374:2	0/1:91,76:30:167:0.455:2	./.	0/1:111,57:30:168:0.339:2	./.	0/1:51,51:31:102:0.500:2	./.
chr14	106235799	rs200028764	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:188,6:31:194:0.031:2	./.	./.	0/1:183,14:31:197:0.071:2	./.	0/1:175,11:31:186:0.059:2	0/1:154,36:31:190:0.189:2	./.	0/1:169,13:32:182:0.071:2	./.	0/1:141,6:32:147:0.041:2
chr14	106235874	rs147594653	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,49:28:124:0.395:2	./.	./.	./.	./.	./.	./.
chr14	106235895	rs189025987	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:79,4:32:83:0.048:2	0/1:55,4:32:59:0.068:2	./.	0/1:118,4:32:122:0.033:2	./.	./.	0/1:73,9:32:82:0.110:2	./.	0/1:85,5:29:90:0.056:2	0/1:41,4:32:45:0.089:2	0/1:38,4:32:42:0.095:2
chr14	106236128	rs12890621	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,100:31:101:0.990:2	0/1:2,51:31:53:0.962:2	0/1:0,18:30:18:1.00:2	0/1:2,170:30:172:0.988:2	0/1:101,77:29:178:0.433:2	0/1:100,76:30:176:0.432:2	0/1:6,163:30:169:0.964:2	0/1:99,86:30:185:0.465:2	0/1:0,93:31:93:1.00:2	0/1:34,24:28:58:0.414:2	0/1:0,51:29:52:1.00:2
chr14	106236143	rs74093865	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,84:32:177:0.475:2	0/1:85,91:32:176:0.517:2	0/1:178,4:32:182:0.022:2	0/1:93,90:32:183:0.492:2	./.	0/1:27,26:32:53:0.491:2	./.
chr14	106236195	rs145035200	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:132,4:31:136:0.029:2	./.	./.	./.	./.	./.	./.
chr14	106236451	rs12895160	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,116:30:120:0.967:2	0/1:0,61:30:61:1.00:2	0/1:0,18:31:18:1.00:2	0/1:2,154:31:156:0.987:2	0/1:132,60:30:193:0.313:2	0/1:125,55:30:180:0.306:2	0/1:3,86:31:89:0.966:2	0/1:141,51:30:192:0.266:2	0/1:0,74:31:74:1.00:2	0/1:46,14:32:60:0.233:2	0/1:2,50:30:52:0.962:2
chr14	106236458	rs11628528	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,104:32:117:0.897:2	0/1:4,54:32:58:0.931:2	0/1:0,19:31:19:1.00:2	0/1:5,140:32:145:0.966:2	0/1:141,54:31:195:0.277:2	0/1:134,51:31:185:0.276:2	0/1:10,83:32:93:0.892:2	0/1:139,52:31:191:0.272:2	0/1:4,71:33:75:0.947:2	0/1:50,14:33:64:0.219:2	0/1:4,47:32:51:0.922:2
chr14	106236834	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:158,29:30:187:0.155:2	0/1:131,26:29:157:0.166:2	0/1:34,6:29:40:0.150:2	0/1:168,21:30:189:0.111:2	./.	0/1:165,26:30:191:0.136:2	0/1:157,35:29:192:0.182:2	0/1:173,20:29:193:0.104:2	0/1:140,45:31:185:0.243:2	0/1:86,6:31:92:0.065:2	0/1:87,12:32:99:0.121:2
chr14	106237499	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:183,8:29:191:0.042:2	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:32:133:0.030:2	./.	./.
chr14	106237522	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:166,4:31:172:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr14	106237642	rs2983777	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:32:55:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,10:31:10:1.00:2
chr14	106303846	rs1005582	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,148:30:148:1.00:2	0/1:0,49:30:49:1.00:2	0/1:1,187:29:191:0.995:2	0/1:0,185:30:187:1.00:2	0/1:1,189:30:191:0.995:2	0/1:1,187:30:189:0.995:2	0/1:0,190:31:190:1.00:2	0/1:0,102:30:104:1.00:2	0/1:0,138:30:139:1.00:2	0/1:1,118:30:122:0.992:2
chr14	106306841	rs709589	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,28:31:28:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,5:31:5:1.00:2	./.	./.	0/1:13,15:30:28:0.536:2	0/1:10,4:31:14:0.286:2	./.	0/1:0,5:33:5:1.00:2	0/1:1,11:31:12:0.917:2	0/1:2,5:33:7:0.714:2
chr14	106307022	rs144089458	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,4:32:12:0.333:2	./.
chr14	106307267	rs369045664	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,29:30:57:0.509:2	./.	./.	./.
chr14	106307418	rs2753492	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,77:32:78:0.987:2	0/1:0,51:31:51:1.00:2	0/1:0,14:31:14:1.00:2	0/1:50,60:31:110:0.545:2	0/1:57,37:32:94:0.394:2	0/1:48,66:32:114:0.579:2	0/1:5,56:32:61:0.918:2	0/1:0,107:32:107:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,36:32:36:1.00:2	0/1:7,13:32:20:0.650:2
chr14	106318342	rs2256593	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,45:28:82:0.549:2	0/1:13,18:28:31:0.581:2	0/1:5,5:29:10:0.500:2	0/1:1,97:29:99:0.990:2	0/1:0,48:28:48:1.00:2	0/1:44,45:28:89:0.506:2	0/1:15,34:28:49:0.694:2	0/1:0,81:27:81:1.00:2	0/1:22,6:27:28:0.214:2	./.	0/1:20,5:25:25:0.200:2
chr14	106321254	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:31:135:0.030:2	./.	./.	./.	./.
chr14	106321590	rs12365	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:28:77:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,107:30:107:1.00:2	0/1:0,131:30:131:1.00:2	0/1:0,123:30:123:1.00:2	0/1:0,99:31:99:1.00:2	0/1:0,150:30:150:1.00:2	0/1:1,28:31:29:0.966:2	0/1:0,32:30:33:1.00:2	0/1:0,38:29:38:1.00:2
chr14	106321663	rs1059216	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,20:30:52:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106321913	rs1136534	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,16:33:30:0.533:2	0/1:9,6:31:15:0.400:2	./.	0/1:0,43:31:43:1.00:2	0/1:1,24:31:25:0.960:2	0/1:20,10:32:30:0.333:2	0/1:6,14:32:20:0.700:2	0/1:0,27:32:27:1.00:2	./.	./.	0/1:3,4:33:7:0.571:2
chr14	106329395	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,4:30:60:0.067:2	./.	./.	./.	./.	./.	./.	0/1:34,12:31:46:0.261:2
chr14	106329433	rs377600355	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,4:32:40:0.100:2	./.	./.	./.	./.	./.	./.	./.
chr14	106329435	rs1950943	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:32:19:1.00:2	0/1:0,9:32:9:1.00:2	0/1:6,3:31:9:0.333:2	0/1:2,35:33:37:0.946:2	0/1:56,16:33:72:0.222:2	0/1:42,22:31:64:0.344:2	0/1:1,33:32:34:0.971:2	0/1:1,48:32:49:0.980:2	0/1:0,38:33:38:1.00:2	0/1:0,20:34:20:1.00:2	0/1:0,32:32:32:1.00:2
chr14	106329450	rs376479093	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,4:29:24:0.167:2	./.	./.	./.
chr14	106329451	rs2338628	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,5:29:14:0.357:2	./.	0/1:9,31:28:41:0.775:2	./.	./.	./.	./.	0/1:3,5:31:8:0.625:2
chr14	106329452	rs2338627	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:27:13:0.385:2	./.	0/1:10,33:29:43:0.767:2	./.	./.	./.	./.	./.
chr14	106329453	rs2338626	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:27:13:0.385:2	./.	0/1:10,32:28:42:0.762:2	./.	./.	./.	./.	0/1:3,4:25:7:0.571:2
chr14	106329468	rs112183172	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,5:30:41:0.125:2	./.	./.	./.	./.	./.	./.
chr14	106329475	rs374246665	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,3:31:37:0.081:2	./.	./.	./.	./.	./.	./.
chr14	106329999	rs375391030	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,5:31:88:0.057:2	./.	./.	./.	./.
chr14	106330002	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,48:32:136:0.353:2	./.	./.	./.	./.	./.
chr14	106330028	rs374615427	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,5:28:135:0.037:2	./.	./.	./.	./.	./.
chr14	106330040	rs144250738	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,28:32:77:0.364:2	./.	./.
chr14	106330057	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,14:30:100:0.140:2	./.	./.	./.	./.
chr14	106330066	rs370477546	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,11:32:84:0.131:2	./.	./.	./.	./.
chr14	106330067	rs78872461	C	T,A	.	PASS	AC=3,1;AF=0.250,0.083;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:BQ:DP:FA:SS	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0/1:31:107:0.093:2	./.	0/2:31:67:0.121:2	./.	./.	0/1:33:82:0.183:2	0/1:30:77:0.091:2	./.
chr14	106330070	rs368220735	G	A,C	.	PASS	AC=2,1;AF=0.222,0.111;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0/1:30:106:0.038:2	./.	./.	0/2:31:77:0.117:2	./.	./.	./.	0/1:31:31:0.323:2
chr14	106330072	rs374480186	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,14:26:27:0.519:2
chr14	106330078	rs368008085	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,34:30:57:0.596:2	./.	./.	./.	./.	./.
chr14	106330079	rs372124885	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,6:31:57:0.105:2	./.	./.	./.	./.	./.
chr14	106330093	rs367788152	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,3:33:45:0.067:2	./.	./.	./.	./.	./.
chr14	106330396	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,5:30:63:0.079:2	./.	./.
chr14	106330399	rs369481309	G	C,A	.	PASS	AC=2,1;AF=0.222,0.111;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/2:28:106:0.057:2	0/1:31:25:0.160:2	./.	./.	./.	./.	0/1:32:9:0.889:2
chr14	106330400	rs374017118	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:26:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106330411	rs368526709	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:87,16:30:103:0.155:2	./.	./.	./.	./.	./.	./.
chr14	106330421	rs368819180	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,3:30:12:0.250:2
chr14	106330423	rs188730646	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,6:29:69:0.087:2	./.	0/1:4,8:28:12:0.667:2
chr14	106330441	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,6:32:68:0.088:2	./.	./.
chr14	106330451	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,6:31:89:0.067:2	./.	./.	./.	./.	./.	./.
chr14	106330460	rs150237274	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,4:32:90:0.044:2	./.	./.	./.	./.	./.	./.	./.
chr14	106330466	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,5:34:58:0.086:2	./.	./.
chr14	106330469	rs371964504	T	A,C	.	PASS	AC=1,1;AF=0.167,0.167;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/2:34:5:0.400:2	./.	./.	0/1:31:4:0.750:2
chr14	106330477	rs148997261	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,3:33:14:0.214:2	./.	./.	./.	./.	./.	./.	./.
chr14	106330772	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	./.
chr14	106330833	rs190698203	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.
chr14	106331454	rs372771442	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106347371	rs112800624	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,29:29:31:0.935:2	./.	./.	./.	./.
chr14	106347412	rs369632440	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr14	106347420	rs72481504	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,25:30:26:0.962:2	./.	./.	./.	./.
chr14	106350696	rs2857368	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,2:33:2:1.00:2	./.	0/1:0,14:28:14:1.00:2	0/1:2,35:29:37:0.946:2	0/1:0,12:30:12:1.00:2	0/1:1,14:29:15:0.933:2	0/1:1,80:30:81:0.988:2	0/1:0,4:30:4:1.00:2	0/1:0,2:30:2:1.00:2	0/1:0,46:30:46:1.00:2	./.
chr14	106350732	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:33:4:1.00:2	./.	./.	./.	./.	./.
chr14	106350733	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.	./.	./.
chr14	106354375	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,8:28:9:0.889:2
chr14	106354378	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,8:26:9:0.889:2
chr14	106354418	rs12894229	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,3:32:22:0.136:2	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.
chr14	106354450	rs113647906	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,3:33:16:0.188:2	./.	./.	./.	./.	./.	./.	./.
chr14	106359416	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,3:32:40:0.075:2	./.	./.	./.	./.	./.	./.
chr14	106359441	rs200597394	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,4:34:33:0.121:2	./.	./.	./.	./.	./.	./.
chr14	106361487	rs368631588	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:33:123:0.033:2	./.
chr14	106361515	rs143676405	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,51:31:64:0.797:2	./.	./.	./.	./.	./.	./.
chr14	106366484	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,20:31:24:0.833:2	./.	./.	./.	./.	./.	./.
chr14	106368472	rs374424558	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:34:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106368517	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:30:8:0.500:2	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106368542	rs201662702	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,6:31:9:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106368544	rs200115395	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,6:32:9:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106369433	rs112597211	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,18:29:25:0.720:2	./.	./.	./.	./.	./.	./.
chr14	106369460	rs187531141	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,88:32:92:0.957:2	./.	./.	./.
chr14	106370370	rs141575023	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,13:32:14:0.929:2	./.	./.	./.	./.	./.	./.
chr14	106370549	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.
chr14	106370553	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,4:33:31:0.129:2	./.	./.	./.	./.
chr14	106370568	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:30:5:1.00:2	./.	./.
chr14	106370603	rs2857350	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:32:5:1.00:2	0/1:0,17:31:17:1.00:2	0/1:2,7:31:9:0.778:2	0/1:12,8:29:20:0.400:2	0/1:1,31:32:32:0.969:2	0/1:0,9:34:9:1.00:2	0/1:0,24:31:24:1.00:2	./.
chr14	106373085	rs139694830	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	0/1:11,38:31:49:0.776:2	./.	./.	./.	./.	./.	./.
chr14	106373086	rs144430901	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	0/1:11,38:32:49:0.776:2	./.	./.	./.	./.	./.	./.
chr14	106379039	rs200877643	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:8,3:33:11:0.273:2	./.	0/1:34,3:32:37:0.081:2	./.	./.	./.	0/1:148,4:32:152:0.026:2	0/1:35,3:32:38:0.079:2	./.	./.
chr14	106382687	rs2857339	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,2:32:2:1.00:2	./.	./.	0/1:0,14:30:14:1.00:2	./.	./.	0/1:23,11:29:34:0.324:2	0/1:0,32:27:32:1.00:2	0/1:0,18:31:18:1.00:2	0/1:34,15:30:49:0.306:2	./.
chr14	106385318	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106385332	rs2250700	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,12:33:12:1.00:2	0/1:0,4:32:4:1.00:2	./.	0/1:0,26:32:26:1.00:2	0/1:0,48:31:48:1.00:2	0/1:94,12:31:106:0.113:2	0/1:42,41:32:83:0.494:2	0/1:1,87:32:88:0.989:2	0/1:0,15:33:15:1.00:2	0/1:0,49:32:49:1.00:2	./.
chr14	106386996	rs59137576	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:5,10:32:15:0.667:2	0/1:3,3:32:6:0.500:2	./.	./.	0/1:19,69:31:88:0.784:2	./.	./.	./.	./.	./.	./.
chr14	106452702	rs11553003	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:33:102:0.039:2
chr14	106452764	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:33:189:0.021:2
chr14	106452766	rs112806369	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:6,46:32:52:0.885:2	0/1:9,21:30:30:0.700:2	0/1:8,22:32:30:0.733:2	./.	0/1:45,132:33:177:0.746:2	0/1:158,29:32:187:0.155:2	0/1:1,168:33:169:0.994:2	./.	0/1:5,144:33:149:0.966:2	./.	./.
chr14	106452817	rs1065059	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,128:30:156:0.821:2	./.	./.	./.	0/1:76,101:29:177:0.571:2	0/1:76,52:29:128:0.406:2
chr14	106452873	rs1065058	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:29:59:0.068:2
chr14	106471268	rs1143505	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,7:28:12:0.583:2	0/1:1,9:28:10:0.900:2	./.	./.	0/1:18,32:27:50:0.640:2	0/1:0,46:26:46:1.00:2	0/1:1,35:27:36:0.972:2	./.	0/1:0,17:28:17:1.00:2	0/1:38,29:27:67:0.433:2	0/1:14,13:28:27:0.481:2
chr14	106471273	rs77346190	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,6:32:13:0.462:2	0/1:1,10:33:11:0.909:2	./.	./.	0/1:20,34:32:54:0.630:2	0/1:0,53:32:53:1.00:2	0/1:1,41:32:42:0.976:2	./.	0/1:0,19:33:19:1.00:2	0/1:44,29:32:73:0.397:2	0/1:17,17:33:34:0.500:2
chr14	106471294	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,6:30:92:0.065:2	./.	./.	./.	./.	./.	./.
chr14	106471328	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,14:30:143:0.098:2	./.	./.	./.	./.	./.	./.
chr14	106471353	rs34069216	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:6,11:32:17:0.647:2	0/1:3,10:32:13:0.769:2	0/1:5,6:32:11:0.545:2	./.	0/1:40,108:31:148:0.730:2	0/1:0,119:31:119:1.00:2	0/1:1,143:31:144:0.993:2	./.	0/1:1,33:31:34:0.971:2	0/1:101,71:31:172:0.413:2	0/1:49,49:31:98:0.500:2
chr14	106471388	rs34874585	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:4,11:30:15:0.733:2	0/1:5,15:31:20:0.750:2	0/1:7,6:33:13:0.462:2	./.	0/1:40,101:30:141:0.716:2	0/1:0,127:30:127:1.00:2	0/1:1,124:30:125:0.992:2	./.	0/1:0,39:31:39:1.00:2	0/1:93,73:30:166:0.440:2	0/1:55,44:31:99:0.444:2
chr14	106471528	rs35966079	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,8:32:11:0.727:2	0/1:9,4:33:13:0.308:2	./.	./.	0/1:19,10:31:29:0.345:2	0/1:0,35:31:35:1.00:2	0/1:0,19:32:19:1.00:2	./.	0/1:3,9:31:12:0.750:2	0/1:60,17:32:77:0.221:2	0/1:59,8:31:67:0.119:2
chr14	106471534	rs36065697	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,8:32:10:0.800:2	0/1:10,3:32:13:0.231:2	./.	./.	0/1:21,10:30:31:0.323:2	0/1:0,31:32:31:1.00:2	0/1:0,16:29:16:1.00:2	./.	0/1:1,9:32:11:0.900:2	0/1:59,16:32:75:0.213:2	0/1:59,7:30:66:0.106:2
chr14	106471547	rs1143496	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,6:30:10:0.600:2	./.	./.	./.	0/1:27,5:32:32:0.156:2	0/1:0,20:32:20:1.00:2	0/1:0,11:28:11:1.00:2	./.	0/1:1,6:32:7:0.857:2	0/1:67,11:32:78:0.141:2	./.
chr14	106471685	rs34315295	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,145:29:178:0.815:2	./.	./.	./.	0/1:72,92:30:165:0.561:2	0/1:80,47:29:127:0.370:2
chr14	106471689	rs56372013	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,35:30:49:0.714:2	0/1:7,14:30:21:0.667:2	0/1:7,21:30:28:0.750:2	0/1:100,4:32:104:0.038:2	0/1:36,135:29:171:0.789:2	0/1:151,32:27:183:0.175:2	0/1:5,179:29:185:0.973:2	./.	0/1:2,94:29:96:0.979:2	./.	./.
chr14	106471691	rs4042134	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,8:33:49:0.163:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106478109	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,34:30:60:0.567:2	./.	./.	./.	./.	./.
chr14	106478113	rs199532423	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,4:31:22:0.182:2	0/1:52,8:32:60:0.133:2	./.	./.	0/1:6,3:31:9:0.333:2	0/1:48,9:31:57:0.158:2	./.
chr14	106478137	rs147818197	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,107:32:189:0.566:2	./.	0/1:14,61:32:75:0.813:2	0/1:9,101:32:110:0.918:2	./.	./.	./.	0/1:59,119:33:179:0.669:2
chr14	106478183	rs77628366	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,3:31:13:0.231:2	./.	./.	./.	0/1:49,7:30:58:0.125:2	0/1:115,4:31:121:0.034:2	0/1:188,5:33:194:0.026:2	./.	./.	./.	0/1:173,6:33:179:0.034:2
chr14	106478194	rs76899215	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,6:30:12:0.500:2	0/1:1,6:30:7:0.857:2	./.	0/1:72,108:30:180:0.600:2	0/1:62,7:30:69:0.101:2	0/1:0,98:29:98:1.00:2	0/1:189,6:31:195:0.031:2	./.	0/1:3,6:30:9:0.667:2	0/1:98,10:30:108:0.093:2	0/1:178,6:30:185:0.033:2
chr14	106478218	rs77238211	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,6:26:89:0.067:2	./.	./.	./.	./.	./.
chr14	106478243	rs200172352	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:30:10:0.400:2	./.	./.	./.	./.	0/1:60,8:30:68:0.118:2	./.	./.	./.	./.	./.
chr14	106478244	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:31:10:0.400:2	./.	./.	./.	./.	0/1:60,8:31:68:0.118:2	./.	./.	./.	./.	./.
chr14	106478251	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,4:22:14:0.286:2	./.	./.	./.	./.	./.
chr14	106478252	rs73365408	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:24:6:0.667:2	./.	./.	./.	./.	./.
chr14	106478334	rs78574933	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,5:32:66:0.076:2	./.	0/1:9,3:32:12:0.250:2	0/1:52,4:32:56:0.071:2	./.
chr14	106478354	rs188216744	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,6:31:46:0.130:2	0/1:26,6:31:32:0.188:2	0/1:47,10:30:57:0.175:2	./.	0/1:11,6:31:17:0.353:2	0/1:47,7:29:54:0.130:2	./.
chr14	106478355	rs202003233	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,49:31:101:0.485:2	./.	./.	0/1:24,25:31:49:0.510:2	./.	./.	./.	0/1:46,46:31:92:0.500:2
chr14	106478356	rs200185933	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,49:31:101:0.485:2	./.	./.	0/1:27,25:31:52:0.481:2	./.	./.	./.	0/1:47,46:31:93:0.495:2
chr14	106478401	rs78225485	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,29:31:72:0.403:2	0/1:26,32:31:58:0.552:2	0/1:29,49:32:78:0.628:2	./.	0/1:14,14:33:28:0.500:2	0/1:58,23:32:82:0.284:2	0/1:86,7:31:93:0.075:2
chr14	106478466	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,4:33:19:0.211:2	0/1:13,6:31:19:0.316:2	./.	0/1:60,5:31:65:0.077:2	0/1:87,4:30:91:0.044:2	0/1:107,4:31:111:0.036:2	./.	./.	0/1:40,3:34:43:0.070:2	0/1:98,8:30:106:0.075:2	./.
chr14	106478513	rs1141386	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:7,18:33:25:0.720:2	0/1:8,9:32:17:0.529:2	0/1:2,4:34:6:0.667:2	0/1:49,4:32:53:0.075:2	0/1:18,61:32:79:0.772:2	0/1:4,107:32:111:0.964:2	0/1:2,77:32:79:0.975:2	0/1:187,5:33:192:0.026:2	0/1:2,35:34:37:0.946:2	0/1:62,49:32:111:0.441:2	0/1:62,21:33:83:0.253:2
chr14	106478547	rs200645461	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:31:36:0.111:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:33:130:0.031:2	./.
chr14	106478548	rs201659551	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:32,3:32:35:0.086:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:33:129:0.031:2	./.
chr14	106478556	rs77360520	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,22:32:56:0.393:2	./.	./.	0/1:118,4:32:122:0.033:2	./.
chr14	106478560	rs56086041	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,73:31:95:0.768:2	./.	./.	./.	0/1:51,56:32:107:0.523:2	0/1:63,29:31:92:0.315:2
chr14	106478563	rs55998743	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,4:32:32:0.125:2	0/1:6,3:32:9:0.333:2	./.	./.	./.	0/1:22,72:31:95:0.766:2	./.	./.	./.	0/1:50,56:32:106:0.528:2	0/1:61,29:30:90:0.322:2
chr14	106494153	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,5:29:192:0.026:2	0/1:189,6:29:195:0.031:2	0/1:188,5:29:193:0.026:2	./.	./.	./.
chr14	106494165	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,8:31:111:0.072:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106494166	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:147,27:30:174:0.155:2	./.	./.	./.	./.	./.	./.	./.
chr14	106494181	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,10:31:114:0.088:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106494221	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,6:33:131:0.046:2	0/1:79,4:33:83:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106494228	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:146,21:29:167:0.126:2	./.	./.	./.	./.	./.	./.	./.
chr14	106494240	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:146,13:29:159:0.082:2	./.	./.	./.	./.	./.	./.	./.
chr14	106494269	rs12895651	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,61:32:67:0.910:2	0/1:15,44:31:59:0.746:2	0/1:0,43:32:43:1.00:2	0/1:96,25:32:121:0.207:2	0/1:1,147:31:148:0.993:2	0/1:0,152:31:152:1.00:2	0/1:1,146:31:147:0.993:2	./.	0/1:1,112:33:113:0.991:2	./.	0/1:37,83:31:120:0.692:2
chr14	106494284	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,13:17:128:0.102:2
chr14	106494303	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:119,9:31:128:0.070:2	./.	./.	./.	./.	./.	./.	./.
chr14	106494327	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,10:30:175:0.057:2
chr14	106494339	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,9:32:86:0.105:2	./.	./.	./.	./.	./.	./.	./.
chr14	106494341	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,11:31:175:0.063:2
chr14	106494408	rs368508505	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,8:33:45:0.178:2	./.	./.	./.	./.	./.	./.	./.
chr14	106494503	rs17705658	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,5:31:37:0.135:2	./.	./.	./.	./.	./.	./.	./.
chr14	106494523	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,5:30:38:0.132:2	./.	./.	./.	./.	./.	./.	./.
chr14	106518400	rs113404618	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,12:32:69:0.174:2	./.	./.	./.	./.	./.	./.	./.
chr14	106518409	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,4:33:9:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106518415	rs188349361	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,11:32:179:0.061:2
chr14	106518418	rs113047412	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,10:26:24:0.417:2	./.	0/1:22,83:25:105:0.790:2	0/1:137,11:26:148:0.074:2	0/1:18,90:25:108:0.833:2	./.	0/1:26,26:26:52:0.500:2	./.	./.
chr14	106518455	.	T	G,A	.	PASS	AC=1,1;AF=0.167,0.167;AN=6;SOMATIC;VT=SNP;set=variant9-variant11	GT:BQ:DP:FA:SS	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	0/2:31:14:0.286:2	./.	0/1:30:179:0.045:2	./.	./.	./.	./.	./.	./.	./.
chr14	106518472	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.	./.
chr14	106518565	rs113460079	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,53:31:137:0.387:2	./.	./.	./.	./.	./.	./.	./.
chr14	106518648	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,3:32:39:0.077:2	./.	./.	./.	./.
chr14	106518848	rs2073679	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,25:33:56:0.446:2	0/1:0,46:32:46:1.00:2	0/1:46,12:34:58:0.207:2	0/1:0,46:33:46:1.00:2	./.	0/1:3,19:33:22:0.864:2	./.	./.
chr14	106552309	rs113783392	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,8:27:179:0.045:2
chr14	106552579	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:30:7:0.429:2	./.	./.
chr14	106573248	rs201210577	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,5:30:24:0.208:2	./.	./.	./.	0/1:47,14:32:61:0.230:2
chr14	106573251	rs10149795	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,6:33:18:0.333:2	0/1:42,3:33:45:0.067:2	0/1:17,7:31:24:0.292:2	./.	0/1:3,5:34:8:0.625:2	./.	0/1:44,16:32:60:0.267:2
chr14	106573291	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,3:33:16:0.188:2	./.	./.	./.	./.	./.	./.
chr14	106573299	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,3:31:19:0.158:2	./.	./.	./.	./.	./.	./.
chr14	106573311	rs75474934	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.	0/1:6,10:31:16:0.625:2	./.	0/1:3,60:32:63:0.952:2	./.	0/1:7,18:33:25:0.720:2	./.	0/1:116,61:32:177:0.345:2
chr14	106573364	rs2003432	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,4:32:7:0.571:2	./.	0/1:58,7:33:65:0.108:2	0/1:126,5:30:131:0.038:2	0/1:5,4:35:9:0.444:2	./.	./.
chr14	106573378	rs201191530	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,3:31:11:0.273:2	./.	./.	./.	0/1:9,4:29:13:0.308:2	./.	0/1:122,6:31:129:0.047:2
chr14	106573383	rs202245780	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,6:33:16:0.375:2	./.	./.	./.	0/1:9,5:33:14:0.357:2	./.	0/1:119,5:34:125:0.040:2
chr14	106573418	rs200483352	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,3:31:14:0.214:2	./.	0/1:24,6:32:30:0.200:2	./.	./.	./.	0/1:65,16:30:81:0.198:2
chr14	106573423	rs201539542	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,3:30:16:0.188:2	./.	0/1:25,4:31:29:0.138:2	./.	./.	./.	0/1:64,13:28:77:0.169:2
chr14	106573482	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,3:31:26:0.115:2	./.	./.	./.	./.	./.	0/1:47,3:32:50:0.060:2
chr14	106573490	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,3:31:27:0.111:2	./.	./.	./.	./.	./.
chr14	106573610	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,6:33:108:0.056:2	./.	./.	./.	./.
chr14	106573623	.	T	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,6:28:101:0.059:2	0/1:118,4:30:122:0.033:2	0/1:32,4:24:36:0.111:2	0/1:111,4:30:115:0.035:2	./.
chr14	106586143	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:33:5:0.600:2	0/1:2,3:32:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106586150	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:32:4:0.750:2	0/1:2,3:31:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106586154	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:30:4:0.750:2	0/1:2,3:30:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106586155	rs147717791	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:28:5:1.00:2	./.	./.
chr14	106586165	rs140926945	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,3:31:15:0.200:2	./.	./.	0/1:0,5:34:5:1.00:2	./.	./.
chr14	106586244	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,5:33:18:0.278:2	./.	./.	./.	./.	./.	./.	./.
chr14	106586259	rs11625174	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,11:32:24:0.458:2	0/1:0,21:32:21:1.00:2	./.	0/1:0,27:32:27:1.00:2	./.	./.	./.	./.
chr14	106586309	rs112082813	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,3:33:31:0.097:2	./.	./.	./.	./.	./.	./.	./.
chr14	106586325	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,7:30:31:0.226:2	./.	./.	./.	./.	./.	./.	./.
chr14	106586394	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106586418	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,17:32:34:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr14	106586553	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,6:32:27:0.222:2	./.	./.	./.	./.	./.	./.	./.
chr14	106610334	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:28:50:0.080:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106610418	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:32:107:0.037:2	./.	./.	./.
chr14	106610469	rs147116210	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,9:29:46:0.196:2	./.	./.	0/1:3,8:28:11:0.727:2	./.	./.
chr14	106610509	rs147758697	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,5:29:20:0.250:2	./.	./.	./.	./.	./.
chr14	106610535	rs117204858	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,3:31:12:0.250:2	./.	./.	./.	./.	./.
chr14	106610761	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,5:32:44:0.114:2	./.	./.	./.	./.	./.	./.
chr14	106641607	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,30:31:109:0.275:2	./.	./.	./.	./.	./.	./.	./.
chr14	106641621	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,31:32:111:0.279:2	./.	./.	./.	./.	./.	./.	./.
chr14	106641757	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,8:32:61:0.131:2	./.	./.	./.	./.	./.	./.	./.
chr14	106641761	rs72695948	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,3:31:13:0.231:2	0/1:26,26:30:52:0.500:2	0/1:25,29:31:54:0.537:2	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.	0/1:28,39:30:67:0.582:2
chr14	106641765	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,9:32:53:0.170:2	./.	./.	./.	./.	./.	./.	./.
chr14	106641833	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:17,4:30:21:0.190:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,5:32:23:0.217:2	./.
chr14	106641851	rs370240779	A	T,C	.	PASS	AC=1,1;AF=0.167,0.167;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/2:32:22:0.182:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30:27:0.154:2	./.
chr14	106641860	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,4:33:25:0.160:2	./.
chr14	106667592	rs3751514	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,6:31:34:0.176:2	./.	./.	0/1:5,7:31:12:0.583:2	./.	./.
chr14	106667810	rs112170273	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:0,22:31:22:1.00:2	0/1:10,8:29:18:0.444:2	./.	./.	./.	./.	./.	./.
chr14	106691682	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,5:28:27:0.185:2	0/1:14,5:32:19:0.263:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106691688	rs201063032	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,6:27:62:0.097:2	./.	./.	./.	0/1:70,6:31:76:0.079:2
chr14	106691728	rs375657552	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,17:32:57:0.298:2	0/1:19,18:32:37:0.486:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106691778	rs4470054	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:33:11:0.364:2	./.	0/1:79,39:32:118:0.331:2	./.	0/1:59,49:33:108:0.454:2	./.	0/1:17,67:34:84:0.798:2	./.	0/1:100,41:33:141:0.291:2
chr14	106691792	rs4426251	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,9:30:117:0.077:2	./.	./.	./.	0/1:73,4:30:77:0.052:2	./.	./.
chr14	106691794	rs4426252	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,9:31:118:0.076:2	./.	./.	./.	0/1:71,4:33:75:0.053:2	./.	./.
chr14	106691800	.	C	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,22:31:119:0.185:2	./.	0/1:67,27:31:94:0.287:2	./.	0/1:15,55:32:70:0.786:2	./.	0/1:93,32:32:125:0.256:2
chr14	106691809	rs199525856	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,12:31:50:0.240:2	0/1:24,11:32:35:0.314:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106691814	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,11:32:49:0.224:2	0/1:23,9:32:32:0.281:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106691869	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,8:31:35:0.229:2	0/1:15,6:32:21:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106691875	rs372488167	C	T,G	.	PASS	AC=2,2;AF=0.167,0.167;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/2:31:32:0.219:2	0/2:32:21:0.238:2	./.	./.	./.	./.	./.	./.	0/1:30:13:0.692:2	./.	0/1:32:52:0.077:2
chr14	106691876	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,9:32:13:0.692:2	./.	0/1:49,4:33:53:0.075:2
chr14	106691880	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,7:30:29:0.241:2	0/1:15,5:32:20:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106692065	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,27:33:81:0.333:2	0/1:32,15:33:47:0.319:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106692143	rs73377566	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,23:29:38:0.605:2	./.
chr14	106725324	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,5:31:139:0.036:2	./.
chr14	106725482	rs56069819	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,5:32:14:0.357:2	./.	./.	./.	./.
chr14	106733216	rs201747581	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:133,6:31:139:0.043:2	./.	0/1:138,13:29:151:0.086:2	./.	0/1:20,7:31:27:0.259:2	./.	0/1:129,8:29:138:0.058:2
chr14	106733223	rs200123370	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:132,6:29:138:0.043:2	./.	0/1:133,8:31:141:0.057:2	./.	0/1:20,5:33:25:0.200:2	./.	0/1:133,7:29:140:0.050:2
chr14	106733228	rs201071498	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:124,5:31:129:0.039:2	./.	0/1:134,7:30:141:0.050:2	./.	0/1:18,4:30:22:0.182:2	./.	0/1:138,6:29:144:0.042:2
chr14	106733520	rs2338199	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,7:30:55:0.127:2	0/1:4,17:30:21:0.810:2	0/1:11,17:31:28:0.607:2	./.	0/1:10,7:32:17:0.412:2	./.	0/1:69,7:31:76:0.092:2
chr14	106733532	rs116710349	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:32:11:0.273:2	./.	0/1:41,7:29:48:0.146:2	./.	0/1:26,5:30:31:0.161:2	./.	0/1:12,7:30:19:0.368:2	./.	0/1:65,7:29:73:0.097:2
chr14	106733555	rs8013154	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.	0/1:46,5:31:51:0.098:2	./.	0/1:32,7:33:39:0.179:2	./.	0/1:14,7:33:22:0.333:2	./.	0/1:74,12:33:86:0.140:2
chr14	106733593	rs4511432	G	T,A	.	PASS	AC=4,1;AF=0.267,0.067;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	./.	0/1:30:6:0.667:2	./.	./.	0/2:30:24:0.708:2	0/1:33:43:0.116:2	./.	0/1:32:18:0.167:2	./.	0/1:31:79:0.165:2
chr14	106757648	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2	./.	./.	./.	./.	./.
chr14	106757655	rs12586893	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:123,68:31:191:0.356:2	./.	./.	./.	0/1:183,11:33:194:0.057:2	./.	0/1:187,4:33:191:0.021:2	./.
chr14	106757692	rs12586895	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:117,77:31:194:0.397:2	./.	./.	./.	0/1:187,10:30:197:0.051:2	./.	./.	./.
chr14	106757786	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:121,18:14:139:0.129:2	0/1:107,20:9:127:0.157:2	0/1:85,14:13:99:0.141:2	./.	./.	./.	./.	0/1:93,13:14:106:0.123:2
chr14	106757799	.	C	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:117,18:16:135:0.133:2	./.	./.	./.	0/1:124,22:12:147:0.151:2	0/1:94,22:14:116:0.190:2	0/1:127,22:13:149:0.148:2	0/1:99,28:14:127:0.220:2	./.	0/1:92,47:14:139:0.338:2	0/1:82,31:16:113:0.274:2
chr14	106758084	rs2073678	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,74:28:156:0.474:2	./.	./.	./.	./.	./.	./.	./.
chr14	106780541	rs201253102	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:79,7:27:86:0.081:2	0/1:45,6:26:51:0.118:2	./.	./.	0/1:60,4:27:64:0.063:2	0/1:60,13:26:73:0.178:2	./.	./.	0/1:12,5:27:17:0.294:2	0/1:69,17:26:86:0.198:2	./.
chr14	106780586	rs202192620	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:128,18:32:146:0.123:2	0/1:68,17:31:85:0.200:2	0/1:15,4:30:19:0.211:2	0/1:160,28:32:188:0.149:2	0/1:89,14:32:103:0.136:2	0/1:106,38:32:144:0.264:2	0/1:92,7:32:99:0.071:2	./.	0/1:16,9:34:25:0.360:2	0/1:121,55:31:176:0.313:2	./.
chr14	106780597	rs200197121	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:142,19:31:161:0.118:2	0/1:72,17:31:89:0.191:2	0/1:16,7:30:23:0.304:2	0/1:160,28:30:188:0.149:2	0/1:99,18:30:117:0.154:2	0/1:118,41:30:159:0.258:2	0/1:94,11:30:105:0.105:2	./.	0/1:22,9:31:31:0.290:2	0/1:116,54:31:170:0.318:2	0/1:179,9:32:188:0.048:2
chr14	106780647	rs112563792	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:149,9:33:158:0.057:2	0/1:87,11:32:98:0.112:2	0/1:16,3:29:19:0.158:2	0/1:128,26:33:154:0.169:2	0/1:84,15:32:99:0.152:2	0/1:112,26:33:138:0.188:2	0/1:79,8:33:87:0.092:2	./.	0/1:24,8:33:32:0.250:2	0/1:107,31:32:138:0.225:2	./.
chr14	106780672	rs369837485	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:82,4:31:86:0.047:2	./.	0/1:134,8:29:142:0.056:2	0/1:67,8:30:75:0.107:2	./.	0/1:80,4:30:84:0.048:2	./.	0/1:26,5:32:31:0.161:2	0/1:87,9:33:96:0.094:2	./.
chr14	106780684	rs200842646	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:132,9:31:141:0.064:2	0/1:69,5:32:74:0.068:2	./.	./.	./.	0/1:22,3:31:25:0.120:2	0/1:90,7:32:97:0.072:2	./.
chr14	106780759	rs61994196	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,6:32:116:0.052:2
chr14	106780801	rs56407212	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:95,60:30:155:0.387:2	0/1:51,19:29:70:0.271:2	0/1:4,6:30:10:0.600:2	0/1:79,54:29:133:0.406:2	./.	./.	./.	./.	./.	./.	./.
chr14	106780803	rs200533358	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:140,18:33:158:0.114:2	0/1:66,8:33:74:0.108:2	./.	0/1:118,21:31:139:0.151:2	0/1:82,12:31:94:0.128:2	0/1:85,10:32:95:0.105:2	0/1:91,14:33:105:0.133:2	./.	0/1:22,7:34:29:0.241:2	0/1:97,21:33:118:0.178:2	./.
chr14	106780807	rs377356277	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,5:29:106:0.047:2	./.	./.	./.	./.	./.
chr14	106780817	rs8009554	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:79,93:32:172:0.541:2	0/1:46,49:31:95:0.516:2	0/1:0,8:30:8:1.00:2	0/1:0,174:32:174:1.00:2	0/1:52,63:32:115:0.548:2	0/1:0,116:33:116:1.00:2	0/1:107,26:31:133:0.195:2	0/1:88,4:31:92:0.043:2	0/1:22,20:33:42:0.476:2	0/1:107,36:32:143:0.252:2	./.
chr14	106791006	rs10148365	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,73:31:96:0.760:2	0/1:9,41:31:50:0.820:2	./.	0/1:30,49:31:79:0.620:2	0/1:1,44:31:45:0.978:2	0/1:31,56:30:87:0.644:2	0/1:19,20:31:39:0.513:2	0/1:0,31:31:31:1.00:2	0/1:9,19:32:28:0.679:2	0/1:29,72:30:101:0.713:2	0/1:0,59:31:59:1.00:2
chr14	106791119	rs4502119	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:99,33:30:132:0.250:2	0/1:52,19:28:71:0.268:2	./.	0/1:78,43:29:121:0.355:2	./.	0/1:129,32:29:161:0.199:2	0/1:56,24:29:80:0.300:2	./.	0/1:37,3:32:40:0.075:2	0/1:128,54:30:182:0.297:2	./.
chr14	106791122	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,3:35:40:0.075:2	./.	./.
chr14	106791131	rs10148460	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,33:32:134:0.246:2	0/1:57,18:33:75:0.240:2	0/1:8,3:34:11:0.273:2	0/1:78,38:33:117:0.328:2	./.	0/1:127,33:31:160:0.206:2	./.	./.	./.	0/1:116,46:33:163:0.284:2	./.
chr14	106791200	rs8017285	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:121,26:31:147:0.177:2	0/1:85,25:31:110:0.227:2	0/1:6,3:31:9:0.333:2	0/1:124,35:30:159:0.220:2	./.	0/1:139,23:29:162:0.142:2	0/1:61,17:30:78:0.218:2	./.	0/1:36,5:29:41:0.122:2	0/1:131,32:30:163:0.196:2	./.
chr14	106791201	rs8016991	C	G,A	.	PASS	AC=7,1;AF=0.292,0.042;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0/1:33:147:0.178:2	0/1:32:110:0.227:2	0/1:34:9:0.333:2	0/1:32:159:0.215:2	./.	0/1:31:162:0.142:2	0/1:32:79:0.215:2	./.	0/2:30:41:0.103:2	0/1:32:164:0.195:2	./.
chr14	106791210	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,5:31:174:0.029:2	./.	./.	./.	./.	./.
chr14	106791231	rs370674425	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:119,6:31:125:0.048:2	./.	./.	./.	./.	./.	./.
chr14	106791253	rs200836182	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:33:70:0.057:2	./.	./.
chr14	106791402	rs199714648	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,39:31:185:0.211:2	./.	./.
chr14	106791422	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,16:31:190:0.084:2	./.	./.	./.	./.	./.
chr14	106791435	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,13:32:181:0.072:2	./.	./.	./.	./.	./.
chr14	106791450	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:34:150:0.027:2	./.	./.	./.	./.
chr14	106791479	rs376796064	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:155,10:31:165:0.061:2	0/1:127,14:31:141:0.099:2	./.	0/1:135,16:30:151:0.106:2	./.	0/1:125,20:30:145:0.138:2	0/1:120,6:30:126:0.048:2	./.	0/1:87,12:30:99:0.121:2	0/1:125,17:30:142:0.120:2	./.
chr14	106805212	rs61740545	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,41:32:123:0.333:2	0/1:46,29:32:75:0.387:2	0/1:11,4:32:15:0.267:2	0/1:55,50:32:105:0.476:2	0/1:76,8:31:84:0.095:2	0/1:42,75:31:117:0.641:2	0/1:42,18:32:60:0.300:2	./.	0/1:15,14:34:29:0.483:2	0/1:70,58:32:128:0.453:2	./.
chr14	106805236	rs61740539	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:112,48:32:160:0.300:2	0/1:67,45:32:112:0.402:2	0/1:17,8:31:25:0.320:2	0/1:97,59:32:156:0.378:2	./.	0/1:79,94:32:173:0.543:2	0/1:63,20:33:83:0.241:2	./.	0/1:21,12:36:33:0.364:2	0/1:106,56:33:163:0.346:2	./.
chr14	106805242	rs61740532	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:158,9:28:167:0.054:2	./.	./.	0/1:158,9:30:167:0.054:2	./.	0/1:163,8:28:171:0.047:2	0/1:88,8:31:96:0.083:2	./.	0/1:30,5:29:35:0.143:2	0/1:148,15:28:163:0.092:2	./.
chr14	106805278	rs61739320	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:123,49:33:172:0.285:2	0/1:102,57:32:159:0.358:2	0/1:35,13:34:48:0.271:2	0/1:109,55:32:165:0.335:2	./.	0/1:62,105:33:167:0.629:2	0/1:90,47:33:137:0.343:2	./.	0/1:37,23:33:60:0.383:2	0/1:101,52:33:153:0.340:2	./.
chr14	106805299	rs61739267	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:169,7:31:176:0.040:2	./.	0/1:173,9:32:182:0.049:2	./.	./.	./.	./.	./.
chr14	106805341	rs200481782	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:149,6:27:155:0.039:2	./.	0/1:166,7:29:173:0.040:2	./.	./.	./.	./.	./.
chr14	106805343	rs200864088	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,6:33:155:0.039:2	./.	0/1:168,7:31:175:0.040:2	./.	./.	./.	./.	./.
chr14	106805381	rs77489245	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:99,32:33:131:0.244:2	0/1:89,25:32:115:0.219:2	0/1:30,8:32:38:0.211:2	0/1:79,44:32:123:0.358:2	./.	0/1:56,63:32:120:0.529:2	0/1:107,20:32:127:0.157:2	./.	0/1:55,20:32:75:0.267:2	0/1:78,37:32:115:0.322:2	./.
chr14	106805386	rs199616126	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,5:33:122:0.041:2	./.	./.	./.	0/1:187,4:34:191:0.021:2
chr14	106805395	rs61995641	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:100,22:31:122:0.180:2	0/1:95,26:31:121:0.215:2	0/1:22,5:29:27:0.185:2	0/1:78,34:30:112:0.304:2	./.	0/1:47,36:31:83:0.434:2	0/1:107,16:30:123:0.130:2	./.	0/1:49,14:30:63:0.222:2	0/1:69,25:29:94:0.266:2	./.
chr14	106805408	rs61995642	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:98,19:29:117:0.162:2	0/1:95,22:31:117:0.188:2	0/1:19,3:30:22:0.136:2	0/1:78,38:29:116:0.328:2	./.	0/1:53,32:31:85:0.376:2	0/1:107,14:28:121:0.116:2	./.	0/1:42,15:29:57:0.263:2	0/1:85,30:30:115:0.261:2	./.
chr14	106805409	rs200277374	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,11:30:121:0.091:2	./.	./.	0/1:115,10:31:125:0.080:2	./.	./.	./.	0/1:181,9:28:191:0.047:2
chr14	106805418	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:165,7:31:173:0.041:2	./.	./.	./.	./.	./.	./.
chr14	106805440	rs6576153	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,121:32:121:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,120:33:120:1.00:2	0/1:0,163:32:163:1.00:2	0/1:0,116:32:116:1.00:2	0/1:0,125:32:125:1.00:2	0/1:0,163:32:163:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,120:32:120:1.00:2	0/1:0,164:32:164:1.00:2
chr14	106805451	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,6:24:125:0.048:2	./.
chr14	106805508	rs4462488	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,173:31:173:1.00:2	0/1:0,122:31:122:1.00:2	0/1:0,25:30:25:1.00:2	0/1:1,154:31:156:0.994:2	0/1:0,169:31:169:1.00:2	0/1:0,156:31:156:1.00:2	0/1:0,178:31:178:1.00:2	0/1:0,192:31:192:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,169:31:169:1.00:2	0/1:0,182:31:182:1.00:2
chr14	106815737	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,3:31:32:0.094:2	./.	./.	./.	./.	./.
chr14	106815752	rs200423519	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,3:31:12:0.250:2	./.	./.
chr14	106815827	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,9:33:78:0.115:2	./.	./.	./.	./.
chr14	106815839	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:134,4:32:138:0.029:2	./.	./.	./.	./.	./.	./.
chr14	106815843	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,7:32:51:0.140:2	./.	./.	./.	./.	./.
chr14	106815862	rs112373679	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,17:30:28:0.607:2	./.	./.
chr14	106815868	rs111734923	C	A,T	.	PASS	AC=1,1;AF=0.167,0.167;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:BQ:DP:FA:SS	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/2:31:50:0.100:2	./.	./.	0/1:30:30:0.600:2	./.	./.
chr14	106815924	rs192341521	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:31:54:0.074:2	./.	./.	./.	./.	./.
chr14	106815935	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,5:24:62:0.081:2	./.	./.	./.	./.	./.
chr14	106815944	rs375401993	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,14:33:61:0.230:2	./.	./.	./.	./.	./.	./.	./.
chr14	106815951	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:154,6:31:160:0.038:2	./.	./.	./.	./.	./.	./.
chr14	106815970	rs138488134	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,8:32:38:0.211:2	./.	./.
chr14	106816119	rs200776385	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,36:31:182:0.198:2	./.	./.
chr14	106816139	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,24:31:186:0.129:2	./.	./.	./.	./.	./.
chr14	106816152	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,22:32:182:0.121:2	./.	./.	./.	./.	./.
chr14	106816167	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,4:33:63:0.063:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106816196	rs146691759	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:155,10:31:165:0.061:2	0/1:95,10:32:105:0.095:2	./.	0/1:147,17:29:165:0.104:2	./.	0/1:126,28:30:154:0.182:2	0/1:118,11:31:129:0.085:2	./.	0/1:92,11:31:103:0.107:2	0/1:132,13:31:145:0.090:2	./.
chr14	106829621	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,6:33:129:0.047:2	./.	./.	./.	./.	./.
chr14	106829643	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:33:63:0.063:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106829667	rs200873048	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:33:189:0.021:2	./.	./.	0/1:59,5:34:64:0.078:2	0/1:179,10:31:189:0.053:2	./.
chr14	106829702	.	C	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:32:169:0.024:2	./.	0/1:109,4:32:113:0.035:2	./.	0/1:180,4:32:184:0.022:2	0/1:174,4:32:178:0.022:2
chr14	106829713	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,6:31:175:0.034:2	./.
chr14	106829720	rs3814939	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:33:147:0.027:2	./.	0/1:100,8:30:108:0.074:2	./.	0/1:161,6:31:167:0.036:2	./.
chr14	106829726	rs3814938	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,10:32:153:0.065:2	0/1:88,8:33:96:0.083:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106829767	rs188280613	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,9:30:107:0.084:2	0/1:67,7:31:74:0.095:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106829781	rs11546815	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,9:32:97:0.093:2	0/1:47,6:32:53:0.113:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106829790	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,10:32:47:0.213:2	./.	./.	./.	./.
chr14	106829851	rs374245683	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,5:33:25:0.200:2	./.	./.	./.	./.
chr14	106829876	rs11267027	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,3:32:27:0.111:2	./.	./.	./.	./.
chr14	106829998	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:32:117:0.034:2	./.	./.	./.
chr14	106830004	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:32:61:0.066:2	./.	./.
chr14	106830045	rs370594953	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:32:181:0.022:2	./.
chr14	106830048	rs372503158	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:34:127:0.031:2	0/1:66,4:33:70:0.057:2	./.	./.
chr14	106845375	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,3:35:75:0.040:2	./.	./.	./.
chr14	106845417	rs112759551	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,25:31:77:0.325:2	./.	./.	0/1:23,18:31:41:0.439:2	./.	./.
chr14	106845753	rs145022218	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,13:33:32:0.406:2	./.	./.	./.	./.	./.	./.
chr14	106866434	rs79672195	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:30:100:0.040:2	./.	./.	./.	./.	./.
chr14	106866449	rs78850219	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,13:30:120:0.108:2	./.	./.	./.	./.	./.
chr14	106866465	rs78660098	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,27:32:154:0.175:2	./.	./.	./.	./.	./.
chr14	106866565	rs58308167	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,34:29:148:0.230:2	./.	./.	0/1:14,8:28:22:0.364:2	./.	./.
chr14	106866588	rs73379082	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,25:31:112:0.223:2	./.	0/1:54,3:33:57:0.053:2	./.	./.	./.
chr14	106866654	rs111799426	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:32:50:0.080:2	0/1:26,3:35:29:0.103:2	./.	./.	./.	./.
chr14	106866668	rs112298109	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:30:46:0.087:2	./.	./.	./.	./.	./.
chr14	106866810	rs73379088	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,27:31:130:0.208:2	./.	./.	./.	./.	./.
chr14	106866822	rs113233536	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,15:32:107:0.140:2	./.	./.	./.	./.	./.
chr14	106877618	rs11847658	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,20:32:112:0.180:2	0/1:21,11:32:32:0.344:2	./.	./.	./.	0/1:39,21:32:60:0.350:2
chr14	106877637	rs11847603	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,17:27:76:0.224:2	./.	0/1:76,65:27:141:0.461:2	0/1:23,14:26:37:0.378:2	./.	./.	./.	0/1:39,35:25:74:0.473:2
chr14	106877692	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,4:32:148:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr14	106877700	rs11847691	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,10:33:27:0.370:2	0/1:143,13:32:156:0.083:2	./.	0/1:100,83:32:183:0.454:2	0/1:41,39:32:80:0.488:2	./.	./.	0/1:174,5:33:179:0.028:2	0/1:70,92:33:162:0.568:2
chr14	106877727	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,7:31:174:0.040:2	./.	./.	./.	./.	./.
chr14	106877753	rs35281264	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:33:18:0.500:2	./.	./.	0/1:79,45:31:124:0.363:2	0/1:33,31:33:64:0.484:2	./.	./.	./.	0/1:67,77:32:145:0.535:2
chr14	106877796	rs34195693	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:33:8:0.375:2	./.	./.	0/1:59,41:32:101:0.410:2	0/1:15,7:29:22:0.318:2	./.	./.	./.	0/1:42,23:31:65:0.354:2
chr14	106877836	rs143740707	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,21:29:73:0.288:2	./.	./.	./.	./.	./.
chr14	106877837	rs145759866	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,21:29:74:0.284:2	./.	./.	./.	./.	./.
chr14	106877849	rs113422537	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,3:29:18:0.167:2	./.	./.	./.	0/1:35,5:30:40:0.125:2
chr14	106877912	rs74093494	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:31:12:0.417:2	./.	./.	0/1:53,11:31:64:0.172:2	./.	./.	./.	./.	0/1:41,10:28:51:0.196:2
chr14	106878056	rs4774113	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:30:82:0.049:2	./.	./.	./.	./.	./.
chr14	106878067	rs4774114	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,7:31:78:0.090:2	./.	./.	./.	./.	0/1:67,5:31:72:0.069:2
chr14	106878071	rs4774115	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,7:28:78:0.090:2	0/1:33,3:33:36:0.083:2	./.	./.	./.	0/1:67,6:33:73:0.082:2
chr14	106926223	rs2467912	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,7:30:19:0.368:2	./.	./.	0/1:129,41:33:171:0.241:2	0/1:108,46:32:154:0.299:2	./.	./.	./.	0/1:99,52:33:151:0.344:2
chr14	106926286	rs138089366	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,59:33:136:0.434:2	./.	./.	./.	./.	0/1:35,22:33:57:0.386:2	./.	./.
chr14	106926287	rs2467911	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:28:10:0.300:2	./.	./.	0/1:117,57:30:175:0.328:2	0/1:37,49:30:86:0.570:2	./.	./.	./.	0/1:82,75:31:157:0.478:2
chr14	106926311	rs4977158	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,42:31:144:0.292:2	./.	./.	./.	./.	./.
chr14	106926388	rs2467910	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:32:10:0.500:2	./.	./.	0/1:55,14:33:69:0.203:2	0/1:17,15:32:32:0.469:2	./.	./.	./.	0/1:27,33:32:60:0.550:2
chr14	106926481	rs111739001	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,12:31:30:0.400:2	./.	./.	./.	./.
chr14	106926649	rs61999678	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,25:31:96:0.260:2	0/1:18,9:32:27:0.333:2	./.	./.	./.	0/1:30,31:33:61:0.508:2
chr14	106963326	rs12884037	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	./.	./.	0/1:34,32:32:67:0.485:2	./.	./.	./.	0/1:57,44:30:101:0.436:2
chr14	106963383	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:33:94:0.043:2	./.	./.	0/1:158,6:32:165:0.037:2
chr14	106967052	rs11848941	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,30:30:75:0.400:2	./.	0/1:2,34:30:36:0.944:2	./.	./.	./.
chr14	106967151	rs55801711	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,53:33:120:0.442:2	0/1:39,28:33:67:0.418:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	106993829	rs7147125	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:31:60:0.067:2
chr14	106993845	rs7148408	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:51,38:32:89:0.427:2	0/1:34,37:32:71:0.521:2	0/1:0,4:33:4:1.00:2	./.	0/1:87,4:32:91:0.044:2	0/1:76,46:30:122:0.377:2	0/1:41,3:33:44:0.068:2	0/1:0,52:32:52:1.00:2	./.	./.	0/1:66,11:31:77:0.143:2
chr14	106993886	rs7146990	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:30:8:0.375:2	./.	0/1:184,9:27:193:0.047:2	./.	0/1:75,12:29:87:0.138:2	./.	0/1:75,13:28:88:0.148:2	./.	0/1:112,25:28:137:0.182:2
chr14	106993945	rs7148607	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,19:32:138:0.138:2	./.	./.	./.	0/1:142,22:32:164:0.134:2
chr14	106993959	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:33:122:0.033:2	./.	0/1:77,7:32:84:0.083:2	./.	0/1:130,6:31:136:0.044:2
chr14	106993964	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:34:116:0.034:2	./.	0/1:74,7:32:81:0.086:2	./.	0/1:129,6:30:135:0.044:2
chr14	106994063	rs4774148	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,7:31:27:0.259:2	./.	./.	./.	0/1:28,10:32:38:0.263:2
chr14	106994071	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,3:32:21:0.143:2	./.	./.
chr14	106994072	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,3:33:49:0.061:2	./.	./.	./.	./.	./.	./.	./.
chr14	106994118	rs112874780	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,6:31:75:0.080:2	./.	./.	0/1:42,7:26:49:0.143:2	./.	./.	./.	./.
chr14	107013029	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,9:33:153:0.059:2	./.	./.	./.	./.	./.	./.	./.
chr14	107013129	rs2073674	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,29:32:49:0.592:2	./.	0/1:8,7:34:15:0.467:2	./.	0/1:47,30:30:77:0.390:2
chr14	107013201	rs2073673	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,10:30:24:0.417:2	0/1:11,5:32:16:0.313:2	./.	0/1:1,27:30:28:0.964:2	0/1:0,20:30:20:1.00:2	0/1:15,13:31:28:0.464:2	0/1:17,6:33:23:0.261:2	./.	0/1:7,7:32:14:0.500:2	0/1:0,20:31:20:1.00:2	0/1:16,20:30:36:0.556:2
chr14	107034789	rs72686840	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,4:31:19:0.211:2	0/1:91,14:32:105:0.133:2	0/1:141,26:32:168:0.156:2	0/1:99,7:32:106:0.066:2	0/1:135,31:33:167:0.187:2	./.	0/1:41,6:30:47:0.128:2	./.	./.
chr14	107034807	rs72686841	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,3:32:17:0.176:2	0/1:97,12:32:109:0.110:2	0/1:161,22:32:183:0.120:2	0/1:100,5:32:105:0.048:2	0/1:132,24:32:156:0.154:2	./.	0/1:38,6:33:44:0.136:2	./.	./.
chr14	107034822	rs199503234	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,7:29:99:0.071:2	0/1:159,15:29:174:0.086:2	./.	0/1:126,20:30:146:0.137:2	./.	./.	./.	./.
chr14	107034920	rs72686843	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,8:31:66:0.121:2	0/1:48,4:32:52:0.077:2	0/1:44,9:31:53:0.170:2	./.	./.	./.	./.
chr14	107034967	rs72686844	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,9:30:21:0.429:2	0/1:31,5:32:36:0.139:2	0/1:24,6:31:30:0.200:2	./.	./.	./.	./.
chr14	107034981	rs2731202	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,7:29:27:0.259:2	./.	0/1:0,10:30:10:1.00:2	./.	./.	./.
chr14	107035002	rs200171934	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,6:25:16:0.375:2	./.	./.	./.	./.	./.	./.
chr14	107035020	rs75660488	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,4:26:16:0.250:2	./.	./.	./.	./.	./.	./.
chr14	107035142	rs61732461	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:20,15:32:35:0.429:2	0/1:7,13:30:20:0.650:2	0/1:3,4:32:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	107035181	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:34:48:0.083:2	./.
chr14	107048690	rs201933735	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,13:31:101:0.129:2	./.	0/1:65,16:31:81:0.198:2	./.	./.	./.	./.	./.
chr14	107048767	rs200617568	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,3:33:20:0.150:2	0/1:132,49:32:181:0.271:2	./.	0/1:117,67:32:184:0.364:2	./.	./.	./.	./.	./.
chr14	107048794	rs200931263	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,67:29:184:0.364:2	./.	./.	./.	./.	./.
chr14	107048803	rs2516922	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,7:31:126:0.056:2	./.	./.	./.	./.
chr14	107048885	rs200064890	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,37:31:78:0.474:2	./.	0/1:57,16:29:73:0.219:2	./.	./.	./.	./.	./.
chr14	107048929	rs35608607	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,8:32:26:0.308:2	./.	0/1:26,6:33:32:0.188:2	./.	./.	./.	./.	./.
chr14	107048939	rs199574916	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,7:32:23:0.304:2	./.	0/1:27,6:31:33:0.182:2	./.	./.	./.	./.	./.
chr14	107048944	rs35850880	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,15:31:40:0.385:2	0/1:13,9:29:22:0.409:2	./.	./.	./.	0/1:23,8:30:31:0.258:2	0/1:23,4:31:28:0.148:2	0/1:14,13:30:27:0.481:2	./.	./.	0/1:26,14:31:40:0.350:2
chr14	107078567	rs2516904	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,102:33:102:1.00:2	0/1:0,47:32:47:1.00:2	0/1:1,12:33:13:0.923:2	./.	0/1:0,135:32:135:1.00:2	0/1:55,39:32:94:0.415:2	0/1:75,49:32:124:0.395:2	0/1:2,84:32:86:0.977:2	0/1:1,45:33:46:0.978:2	0/1:3,97:33:100:0.970:2	0/1:44,64:32:108:0.593:2
chr14	107078790	rs1858692	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:31:63:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,8:30:8:1.00:2	0/1:37,35:31:72:0.486:2	0/1:0,76:32:76:1.00:2	0/1:0,82:31:82:1.00:2	0/1:42,36:31:78:0.462:2	0/1:0,39:31:39:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,60:31:60:1.00:2	0/1:47,29:31:76:0.382:2
chr14	107083255	rs201430098	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:131,17:31:149:0.115:2	./.	0/1:77,41:31:119:0.347:2	./.	./.	./.	./.	./.
chr14	107083283	rs199810048	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:135,29:32:164:0.177:2	./.	0/1:105,71:32:176:0.403:2	./.	./.	./.	./.	./.
chr14	107083286	rs201135869	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:135,28:27:163:0.172:2	./.	0/1:106,68:26:174:0.391:2	./.	./.	./.	./.	./.
chr14	107083385	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,39:29:183:0.213:2	./.	./.	./.
chr14	107083389	rs201910385	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,91:31:174:0.523:2	./.	./.	./.	./.	./.
chr14	107083390	rs200085543	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,91:29:178:0.511:2	./.	./.	./.	./.	./.
chr14	107083397	rs181552121	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,98:31:175:0.560:2	./.	./.	./.	./.	./.
chr14	107083443	rs371984135	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,53:31:161:0.329:2	./.	./.	./.
chr14	107083469	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,56:29:140:0.400:2	./.	./.	./.
chr14	107083501	rs201046592	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:167,5:32:172:0.029:2	./.	./.	0/1:117,5:32:122:0.041:2	./.	./.	0/1:140,4:33:144:0.028:2	0/1:179,7:31:186:0.038:2
chr14	107083502	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:163,5:30:168:0.030:2	./.	./.	0/1:115,5:29:120:0.042:2	./.	./.	0/1:141,4:31:145:0.028:2	0/1:182,7:31:189:0.037:2
chr14	107083507	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,6:30:150:0.040:2	./.
chr14	107083543	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:32:177:0.023:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	107083633	rs2516932	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:185,4:32:189:0.021:2	./.	./.	0/1:51,135:32:186:0.726:2	0/1:190,8:33:198:0.040:2	0/1:72,121:31:193:0.627:2	0/1:174,9:31:183:0.049:2	./.	0/1:101,5:33:106:0.047:2	./.	0/1:160,20:32:180:0.111:2
chr14	107083662	rs56139643	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:178,19:32:197:0.096:2	0/1:195,4:32:199:0.020:2	./.	0/1:178,15:31:195:0.078:2	./.	./.	./.	0/1:150,43:32:193:0.223:2
chr14	107083677	rs142073023	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,4:33:66:0.061:2	./.	./.	./.	./.	./.	0/1:177,5:32:182:0.027:2	./.	./.
chr14	107095125	rs200674821	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,12:32:53:0.226:2	./.	0/1:95,17:30:112:0.152:2	./.	./.	./.	./.	./.
chr14	107095129	rs201922720	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.	./.	./.	./.
chr14	107095153	rs199740402	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,35:32:135:0.259:2	./.	0/1:149,46:31:195:0.236:2	./.	./.	./.	./.	./.
chr14	107095156	rs200408267	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,40:25:138:0.290:2	./.	0/1:146,49:25:195:0.251:2	./.	./.	./.	./.	./.
chr14	107095199	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:34:183:0.022:2	./.	./.	./.	./.	./.
chr14	107095207	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,8:30:184:0.043:2	./.	./.	./.
chr14	107095210	rs370739553	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,7:31:184:0.038:2	./.	./.	./.
chr14	107095255	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,17:30:190:0.089:2	./.	./.	./.
chr14	107095259	rs201076896	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,54:30:187:0.289:2	./.	./.	./.	./.	./.
chr14	107095260	rs201691548	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,54:28:189:0.286:2	./.	./.	./.	./.	./.
chr14	107095267	rs199845681	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,52:29:184:0.284:2	./.	./.	./.	./.	./.
chr14	107095326	rs1064309	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,153:30:154:0.994:2	0/1:0,127:31:127:1.00:2	0/1:0,34:28:34:1.00:2	0/1:0,4:19:4:1.00:2	0/1:0,141:29:141:1.00:2	0/1:1,91:29:92:0.989:2	0/1:1,126:29:127:0.992:2	0/1:0,143:30:143:1.00:2	0/1:0,115:30:115:1.00:2	0/1:0,163:29:163:1.00:2	0/1:0,118:30:118:1.00:2
chr14	107095338	rs2072046	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,7:29:9:0.778:2	./.	0/1:91,4:31:95:0.042:2	./.	./.	./.	./.	./.
chr14	107095377	rs201453364	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,15:32:32:0.469:2	./.	./.	0/1:95,5:32:101:0.050:2	./.	./.	./.	./.
chr14	107095378	rs199760312	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,15:30:37:0.405:2	./.	./.	0/1:94,6:32:100:0.060:2	./.	./.	./.	./.
chr14	107095423	rs201399631	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,8:31:127:0.063:2	0/1:81,7:32:88:0.080:2	./.	./.	0/1:157,5:32:162:0.031:2	./.
chr14	107095535	rs201905956	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:197:0.020:2	./.	0/1:190,4:32:194:0.021:2	0/1:157,5:33:162:0.031:2
chr14	107095553	rs2516897	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,106:31:124:0.855:2	./.	./.	0/1:141,47:31:188:0.250:2	./.	./.	./.	0/1:134,34:30:168:0.202:2
chr14	107095569	rs200506032	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,10:31:184:0.054:2	./.	./.	./.	0/1:194,5:31:199:0.025:2	./.
chr14	107095570	rs201574166	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,10:32:184:0.054:2	./.	./.	./.	0/1:192,5:32:198:0.025:2	./.
chr14	107113820	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,37:32:76:0.487:2	./.	./.
chr14	107113846	rs201523378	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,12:29:86:0.140:2	0/1:58,21:29:79:0.266:2	0/1:83,7:25:90:0.078:2	./.	./.	0/1:66,4:29:70:0.057:2	./.	./.
chr14	107113851	rs2072045	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,62:31:76:0.816:2	./.	0/1:44,43:30:87:0.494:2	./.	./.	./.	./.	./.
chr14	107113855	rs111637096	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,13:30:78:0.167:2	0/1:57,23:29:80:0.288:2	0/1:83,8:28:91:0.088:2	0/1:93,17:29:110:0.155:2	./.	0/1:64,4:30:68:0.059:2	./.	./.
chr14	107113858	rs111853090	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,13:32:80:0.163:2	0/1:56,23:31:79:0.291:2	0/1:84,8:32:92:0.087:2	0/1:94,17:32:111:0.153:2	./.	0/1:65,4:34:69:0.058:2	./.	./.
chr14	107113884	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,27:33:66:0.409:2	./.	./.
chr14	107113968	rs113324720	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,8:30:38:0.211:2	0/1:24,10:31:34:0.294:2	0/1:35,5:30:40:0.125:2	0/1:27,10:30:37:0.270:2	0/1:40,4:33:44:0.091:2	0/1:18,3:29:21:0.143:2	./.	./.
chr14	107114009	rs11846079	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,18:32:18:1.00:2	0/1:26,3:32:29:0.103:2	0/1:18,15:33:33:0.455:2	./.	./.	./.	./.	./.
chr14	107114126	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,4:32:85:0.047:2	./.	./.	./.	./.	./.	./.	./.
chr14	107114193	rs2073670	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,74:30:74:1.00:2	./.	0/1:43,38:30:81:0.469:2	./.	./.	./.	./.	./.
chr14	107131051	rs2583287	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,6:29:31:0.194:2	./.	./.	./.	./.
chr14	107131063	rs2583286	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:28:10:0.400:2	0/1:31,21:29:52:0.404:2	./.	0/1:44,14:28:58:0.241:2	0/1:27,10:28:37:0.270:2	./.	./.	./.	./.
chr14	107131072	rs111633690	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,10:30:96:0.104:2	./.	./.	./.	./.	./.	./.
chr14	107131076	rs112508867	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:90,10:33:100:0.100:2	./.	./.	./.	./.	./.	./.
chr14	107131128	rs10143945	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,12:32:41:0.293:2	0/1:151,10:32:161:0.062:2	0/1:87,10:30:97:0.103:2	./.	./.	./.	./.	./.
chr14	107131164	rs6423677	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,25:26:25:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr14	107131246	rs141606676	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,11:30:17:0.647:2	./.	0/1:25,4:28:30:0.138:2	./.	./.	./.	./.	./.
chr14	107131290	rs149638514	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,8:31:18:0.444:2	./.	0/1:33,4:30:37:0.108:2	./.	./.	./.	./.	./.
chr14	107131300	rs34376395	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,8:33:17:0.471:2	./.	0/1:35,4:32:39:0.103:2	./.	./.	./.	./.	./.
chr14	107131305	rs200817138	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,11:30:56:0.200:2	0/1:17,7:32:24:0.292:2	./.	./.	./.	0/1:29,10:29:39:0.256:2	0/1:12,5:30:17:0.294:2	0/1:20,7:31:27:0.259:2	./.	./.	0/1:39,4:32:43:0.093:2
chr14	107131410	rs11627183	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:80,7:30:87:0.080:2	./.	./.	0/1:18,30:29:48:0.625:2	./.	0/1:58,25:29:83:0.301:2	0/1:35,9:31:44:0.205:2	0/1:91,7:31:98:0.071:2	./.	./.	0/1:112,6:32:119:0.051:2
chr14	107131441	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,5:32:102:0.049:2	./.	./.	./.	./.	0/1:86,8:31:94:0.085:2	0/1:58,5:34:63:0.079:2	0/1:130,4:32:134:0.030:2	./.	./.	./.
chr14	107131484	rs2904626	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,27:30:97:0.278:2	./.	./.	./.	./.	./.
chr14	107131505	rs2904625	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:34:113:0.035:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	107169946	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,8:30:128:0.063:2	./.	./.	./.	./.
chr14	107169958	rs11557972	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,7:31:133:0.053:2	./.	./.
chr14	107169974	rs11557974	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,8:31:149:0.054:2	./.	./.
chr14	107169979	rs11557988	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:132,5:31:137:0.036:2	./.	./.	./.	./.	./.	./.	./.
chr14	107170005	rs1141720	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,115:30:115:1.00:2	0/1:0,70:30:70:1.00:2	0/1:9,22:30:31:0.710:2	./.	0/1:76,115:30:191:0.602:2	0/1:0,162:30:163:1.00:2	0/1:63,131:31:194:0.675:2	0/1:2,185:30:187:0.989:2	0/1:34,109:32:143:0.762:2	0/1:1,157:30:158:0.994:2	0/1:64,126:30:190:0.663:2
chr14	107170011	rs74089691	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,68:30:173:0.393:2	./.	./.	./.	./.	./.
chr14	107170014	rs11557979	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:32:168:0.024:2	./.
chr14	107170037	rs370024749	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,5:34:141:0.035:2	./.	./.
chr14	107170055	rs8009570	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,104:30:109:0.963:2	./.	./.	./.	./.	./.	./.	./.
chr14	107170062	rs55891010	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,96:33:99:0.970:2	./.	./.	./.	./.	./.	./.	./.
chr14	107170065	rs11557991	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,30:32:120:0.250:2	./.	./.
chr14	107170077	rs11845244	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,83:31:86:0.965:2	./.	./.	./.	./.	./.	./.	./.
chr14	107170116	rs11557992	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:146,5:32:151:0.033:2	./.	./.	./.	./.	./.	./.
chr14	107170127	rs11557984	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,20:31:124:0.161:2
chr14	107170128	rs11558005	C	A,T	.	PASS	AC=1,1;AF=0.167,0.167;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:BQ:DP:FA:SS	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0/2:30:47:0.979:2	./.	./.	./.	./.	0/1:32:97:0.082:2	./.	./.
chr14	107170145	rs189122962	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,9:32:80:0.113:2	./.	./.
chr14	107170155	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,8:31:77:0.104:2	./.	./.
chr14	107170174	rs8009448	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,22:32:60:0.367:2	./.	./.	./.	./.	./.
chr14	107170207	rs11845287	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,31:31:31:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr14	107170219	rs2187989	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,33:33:33:1.00:2	./.	0/1:36,22:32:58:0.379:2	./.	./.	./.	./.	./.
chr14	107178819	rs372848046	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,18:33:139:0.129:2	./.	0/1:127,13:31:140:0.093:2
chr14	107178820	rs139383686	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,7:32:122:0.057:2	./.	./.	./.	./.	./.	./.	./.	./.
chr14	107178828	rs369551675	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,16:31:147:0.109:2
chr14	107178832	rs10144402	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,164:33:164:1.00:2	0/1:0,133:32:133:1.00:2	0/1:0,144:32:144:1.00:2	0/1:0,159:33:160:1.00:2	0/1:0,160:34:160:1.00:2	0/1:0,166:33:166:1.00:2	0/1:3,154:34:159:0.981:2	0/1:0,162:33:162:1.00:2	0/1:0,153:34:153:1.00:2	0/1:0,162:34:162:1.00:2	0/1:0,153:34:153:1.00:2
chr14	107178860	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,10:31:183:0.055:2	./.	./.	./.	./.
chr14	107178861	rs373599438	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:162,31:33:193:0.161:2	./.	./.	./.	./.	./.	./.	./.
chr14	107178870	rs372326819	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,12:31:198:0.061:2	./.
chr14	107178883	rs371102764	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:172,4:31:176:0.023:2	./.	./.	./.	./.	./.	./.
chr14	107178907	rs369407281	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,6:30:122:0.049:2
chr14	107178909	rs372477786	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:33:160:0.025:2	./.	./.	./.	./.
chr14	107178915	rs376644103	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:32:108:0.037:2
chr14	107178916	rs371189824	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,7:30:166:0.042:2	./.	./.	0/1:142,9:31:151:0.060:2	./.	./.
chr14	107178919	rs373266582	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,11:31:163:0.067:2	./.	./.	./.	./.
chr14	107178922	rs370734838	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:31:105:0.038:2
chr14	107178924	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:33:173:0.023:2	./.	./.	./.
chr14	107178929	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,11:30:162:0.068:2	./.	./.	./.	./.
chr14	107178935	rs372409204	C	T,A	.	PASS	AC=1,1;AF=0.167,0.167;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/2:30:164:0.030:2	./.	./.	./.	0/1:31:93:0.290:2
chr14	107178936	rs374373498	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,5:31:162:0.031:2	./.	./.	./.	./.
chr14	107178939	rs374660856	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,23:31:140:0.164:2	./.	./.
chr14	107178940	rs61733526	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,12:25:159:0.075:2	./.	./.	./.	./.
chr14	107178941	rs10133751	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:60,22:30:82:0.268:2	0/1:64,55:30:119:0.462:2	0/1:130,38:30:168:0.226:2	./.	0/1:131,28:29:159:0.176:2	./.	0/1:101,39:30:140:0.279:2	./.	0/1:72,18:31:90:0.200:2
chr14	107178942	rs113677522	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,59:31:164:0.360:2	./.	./.	./.
chr14	107178945	rs17113973	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,7:31:147:0.048:2	0/1:176,10:32:186:0.054:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	107178950	rs377320995	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,21:32:81:0.259:2
chr14	107178955	rs371179860	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,21:29:137:0.153:2	./.	./.
chr14	107178965	rs2073669	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,41:26:64:0.651:2	0/1:2,116:25:120:0.983:2	0/1:120,43:26:165:0.264:2	0/1:83,67:25:152:0.447:2	0/1:117,26:24:145:0.182:2	./.	0/1:60,79:25:139:0.568:2	./.	0/1:68,17:22:85:0.200:2
chr14	107178969	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,18:29:83:0.228:2
chr14	107178973	rs372339595	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:162,22:31:184:0.120:2	./.	./.	./.	./.	./.	./.
chr14	107179000	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,54:32:173:0.312:2	./.	./.	./.
chr14	107179009	rs367953381	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,5:30:110:0.045:2
chr14	107179010	rs370560636	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,35:31:110:0.324:2
chr14	107179011	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,9:28:172:0.052:2	0/1:173,14:30:187:0.075:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr14	107179013	rs61732216	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,59:30:153:0.388:2	./.	./.	./.	./.	./.	./.	./.
chr14	107179016	rs368641348	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,3:36:115:0.026:2
chr14	107179017	rs61732209	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:34,13:32:47:0.277:2	0/1:96,59:30:155:0.381:2	0/1:118,68:30:188:0.366:2	./.	0/1:128,48:30:176:0.273:2	./.	0/1:131,33:31:164:0.201:2	./.	0/1:91,24:32:116:0.209:2
chr14	107179019	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,5:32:181:0.028:2	./.	./.	./.	./.
chr14	107179020	rs369368857	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,31:33:164:0.189:2	./.	./.
chr14	107179022	rs2157615	C	G,T	.	PASS	AC=1,2;AF=0.111,0.222;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0/2:30:166:0.054:2	./.	./.	./.	./.	0/2:31:165:0.042:2	./.	0/1:33:123:0.382:2
chr14	107179023	rs375709454	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:158,8:32:167:0.048:2	./.	./.	./.	./.	./.	./.	./.
chr14	107179027	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,8:34:135:0.059:2
chr14	107179029	rs373039668	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,32:33:163:0.196:2	./.	./.
chr14	107179031	rs370615998	C	G,T	.	PASS	AC=1,2;AF=0.111,0.222;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:BQ:DP:FA:SS	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0/2:32:162:0.025:2	./.	./.	0/2:31:192:0.110:2	./.	0/1:31:163:0.129:2	./.	./.
chr14	107179036	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,11:29:157:0.070:2	./.
chr14	107179043	rs376985995	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,13:33:162:0.080:2	./.	./.
chr14	107179047	rs369555797	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,31:28:159:0.195:2	./.	./.
chr14	107179070	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,5:32:120:0.042:2	./.
chr14	107179106	rs10144703	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,3:31:14:0.214:2	0/1:71,48:31:119:0.403:2	0/1:92,37:31:129:0.287:2	./.	0/1:102,35:32:137:0.255:2	./.	0/1:91,16:32:107:0.150:2	./.	0/1:103,35:32:138:0.254:2
chr14	107179110	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,11:33:134:0.082:2
chr14	107179120	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,12:31:139:0.086:2
chr14	107179191	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,7:33:89:0.079:2	./.	./.	./.	./.	./.	./.	./.
chr14	107179195	rs146746717	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,13:32:125:0.104:2	./.	./.	./.	./.
chr14	107179268	rs10144801	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,8:30:17:0.471:2	0/1:32,24:32:56:0.429:2	./.	0/1:35,24:33:59:0.407:2	./.	./.	./.	./.	./.
chr14	107211211	rs2073668	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,6:31:9:0.667:2	0/1:1,51:32:52:0.981:2	./.	0/1:25,18:31:43:0.419:2	./.	./.	./.	./.	./.
chr14	107218829	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,6:31:60:0.100:2	./.	./.	./.	./.	0/1:110,5:31:115:0.043:2	./.	./.	./.	0/1:88,4:33:92:0.043:2	./.
chr14	107218852	.	C	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,6:30:68:0.088:2	./.	./.	./.	./.	0/1:106,6:31:112:0.054:2	./.	./.	./.	0/1:81,4:32:85:0.047:2	./.
chr14	107219079	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,7:32:85:0.082:2	./.	./.	./.	./.	./.
chr14	107282926	rs149038822	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:27:52:0.077:2	./.
chr14	107282935	rs201762529	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,3:32:41:0.075:2	./.
chr14	107283156	rs10133664	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,32:32:91:0.352:2	0/1:72,43:32:115:0.374:2	0/1:2,105:32:107:0.981:2	0/1:77,31:32:108:0.287:2	./.	0/1:93,45:31:138:0.326:2
chr14	107283160	rs10133737	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,30:31:87:0.345:2	0/1:71,45:32:116:0.388:2	0/1:2,96:32:98:0.980:2	0/1:79,32:32:111:0.288:2	./.	0/1:96,41:31:137:0.299:2
chr15	20588693	rs74318793	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,26:30:82:0.317:2	./.	./.	./.	0/1:82,18:31:100:0.180:2	./.
chr15	20588705	rs4931826	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:72,15:31:87:0.172:2	./.	./.	0/1:18,16:30:34:0.471:2	./.	0/1:46,11:30:57:0.193:2	./.	0/1:13,12:30:25:0.480:2	./.	0/1:80,8:31:88:0.091:2	0/1:50,14:31:64:0.219:2
chr15	20642621	rs201666330	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,26:31:197:0.132:2	0/1:171,28:32:199:0.141:2	./.	./.	0/1:176,21:31:197:0.107:2	./.
chr15	20643927	rs148127977	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,23:33:190:0.121:2	0/1:156,29:31:185:0.157:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	20644221	rs138431990	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,23:32:84:0.274:2	0/1:98,46:32:144:0.319:2	./.	0/1:136,25:33:161:0.155:2	./.
chr15	20644295	rs138695973	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,12:29:75:0.160:2	./.	./.	./.	./.	./.	./.
chr15	20645751	rs148430017	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,11:30:43:0.256:2	./.	./.	./.	./.	./.	./.	0/1:165,23:30:188:0.122:2	./.
chr15	20645827	rs76197396	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:148,39:31:187:0.209:2	./.	./.	./.	./.	./.	./.
chr15	20645859	rs141439386	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,20:32:135:0.148:2	./.
chr15	20657740	rs143411031	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,7:32:76:0.092:2	./.	./.	0/1:54,7:33:61:0.115:2	./.	./.
chr15	20657756	rs199759895	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,14:33:90:0.156:2	./.	./.	0/1:57,7:32:64:0.109:2	0/1:77,6:35:83:0.072:2	./.
chr15	20658646	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,51:32:179:0.285:2	./.	./.	0/1:145,26:34:171:0.152:2	./.	./.
chr15	20658666	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,39:31:157:0.248:2	./.	./.	0/1:124,20:32:144:0.139:2	./.	./.
chr15	20658754	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,23:32:53:0.434:2	./.	./.	0/1:28,11:35:40:0.282:2	./.	./.
chr15	20662596	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,20:31:164:0.122:2	./.	./.	./.	./.	./.
chr15	20662617	rs200000375	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,24:29:184:0.130:2	0/1:81,15:30:96:0.156:2	./.	./.	0/1:154,41:31:195:0.210:2	./.
chr15	20662917	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:34:196:0.020:2	./.	./.
chr15	20663080	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,6:26:191:0.031:2	./.	./.	0/1:188,6:29:194:0.031:2	./.	./.
chr15	20663578	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:173,13:30:186:0.070:2	./.	./.	./.	./.	./.	./.
chr15	20663624	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,30:31:128:0.234:2	./.	./.	0/1:104,12:32:116:0.103:2	./.	./.
chr15	20663643	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,9:33:119:0.076:2	0/1:76,8:33:84:0.095:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	20739739	rs3102424	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,5:30:52:0.096:2	0/1:30,7:28:37:0.189:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	20739825	rs28590435	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,5:30:27:0.185:2	./.	./.	./.	0/1:20,4:33:24:0.167:2	./.
chr15	20739865	.	G	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:29,8:33:37:0.216:2	0/1:32,5:33:37:0.135:2	0/1:0,2:27:2:1.00:2	./.	0/1:13,5:28:18:0.278:2	./.	./.	0/1:0,4:32:4:1.00:2	./.	0/1:6,6:30:12:0.500:2	0/1:11,3:33:14:0.214:2
chr15	20739884	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.
chr15	20739885	rs57050697	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,23:29:23:1.00:2	0/1:2,22:28:24:0.917:2	./.	0/1:1,16:28:17:0.941:2	0/1:0,6:26:6:1.00:2	0/1:0,10:27:10:1.00:2	0/1:0,5:24:5:1.00:2	0/1:0,2:29:2:1.00:2	0/1:0,15:28:15:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,11:31:11:1.00:2
chr15	20739956	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,7:25:169:0.042:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	20739994	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,7:28:184:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	20740040	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,8:23:172:0.047:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	20740075	rs201994034	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,16:31:154:0.104:2	0/1:153,14:31:167:0.084:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	20740088	rs373146154	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,18:27:129:0.140:2	0/1:151,14:25:167:0.085:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	20740116	.	T	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:150,12:28:163:0.074:2	0/1:105,18:26:124:0.146:2	0/1:130,7:29:138:0.051:2	0/1:126,10:27:136:0.074:2	./.	./.	./.	0/1:132,12:23:146:0.083:2	./.
chr15	20740129	rs199932545	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:154,9:30:163:0.055:2	./.	0/1:117,50:31:167:0.299:2	./.	./.	0/1:115,49:31:164:0.299:2	./.
chr15	20740153	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:138,6:32:144:0.042:2	./.	0/1:149,8:27:158:0.051:2	./.	./.	./.	./.	./.
chr15	20740192	rs145446071	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,17:29:140:0.122:2	0/1:132,24:29:157:0.154:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	20740193	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,5:28:104:0.048:2	./.	./.	0/1:127,5:28:132:0.038:2
chr15	20740216	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,5:29:147:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	20740231	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:32:116:0.034:2	./.
chr15	20740252	rs199807662	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,38:32:94:0.404:2	0/1:37,42:31:79:0.532:2	0/1:0,15:32:15:1.00:2	0/1:80,16:32:96:0.167:2	0/1:14,64:30:78:0.821:2	0/1:16,70:31:86:0.814:2	0/1:12,43:31:55:0.782:2	0/1:37,41:30:78:0.526:2	0/1:67,28:32:95:0.295:2	0/1:11,70:31:81:0.864:2	0/1:22,90:32:112:0.804:2
chr15	20740292	rs373904595	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.
chr15	20740293	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	./.
chr15	20740295	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:23:5:0.600:2
chr15	20740367	rs62001792	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,8:29:44:0.182:2	./.	./.	./.	./.	0/1:32,8:33:40:0.200:2	./.	./.
chr15	20740431	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,3:31:35:0.086:2	./.	./.	./.	./.	./.	0/1:34,3:32:37:0.081:2	./.
chr15	20740571	rs200650686	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:25,5:27:30:0.167:2	./.	./.	0/1:30,5:34:35:0.143:2	./.	0/1:20,6:33:26:0.231:2	./.	./.	./.	0/1:14,9:34:23:0.391:2	0/1:12,4:32:16:0.250:2
chr15	21040764	rs201302029	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:158,32:32:190:0.168:2	0/1:156,38:32:194:0.196:2	0/1:5,29:32:34:0.853:2	0/1:155,26:31:181:0.144:2	0/1:120,30:31:150:0.200:2	./.	0/1:55,80:31:135:0.593:2	0/1:64,41:33:105:0.390:2	0/1:132,38:34:170:0.224:2	0/1:96,87:32:183:0.475:2	0/1:106,85:32:191:0.445:2
chr15	21040783	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:151,4:32:155:0.026:2	./.	./.	0/1:91,6:32:97:0.062:2	0/1:168,8:34:176:0.045:2	./.	./.
chr15	21040862	rs199706707	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:172,22:32:194:0.113:2	0/1:169,31:32:200:0.155:2	0/1:33,39:31:72:0.542:2	0/1:180,18:32:198:0.091:2	0/1:168,23:31:192:0.120:2	./.	0/1:93,105:32:198:0.530:2	0/1:117,74:32:191:0.387:2	0/1:142,50:33:192:0.260:2	0/1:118,81:32:199:0.407:2	0/1:105,88:32:193:0.456:2
chr15	21040895	rs200802444	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:185,12:33:197:0.061:2	0/1:187,8:32:195:0.041:2	0/1:65,8:31:73:0.110:2	./.	./.	./.	./.	0/1:139,57:32:196:0.291:2	./.	./.	0/1:171,25:33:196:0.128:2
chr15	21042575	rs138824591	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:183,16:31:199:0.080:2	0/1:185,14:32:199:0.070:2	0/1:36,14:31:50:0.280:2	./.	0/1:153,30:31:183:0.164:2	./.	0/1:80,51:31:131:0.389:2	./.	./.	0/1:118,79:31:197:0.401:2	0/1:148,46:31:194:0.237:2
chr15	21042578	rs201228496	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,25:32:198:0.126:2	0/1:186,14:32:200:0.070:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	21042646	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:166,23:31:189:0.122:2	./.	./.	./.	./.	0/1:149,34:32:183:0.186:2	./.	./.
chr15	21051201	rs142304809	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:168,30:33:198:0.152:2	./.	./.	./.	./.	0/1:163,31:33:194:0.160:2	./.	./.
chr15	21052418	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:32:195:0.021:2	./.	./.	./.
chr15	21052437	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,34:33:194:0.175:2	./.	./.	./.
chr15	21053831	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:177,20:32:197:0.102:2	0/1:182,16:31:198:0.081:2	./.	0/1:123,30:31:153:0.196:2	0/1:64,13:30:78:0.169:2	./.	0/1:68,11:32:79:0.139:2	./.	./.	0/1:139,27:32:166:0.163:2	0/1:153,32:32:185:0.173:2
chr15	21063501	rs147093754	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:193,6:33:199:0.030:2	0/1:191,7:32:198:0.035:2	./.	0/1:157,24:33:181:0.133:2	0/1:34,19:32:53:0.358:2	./.	0/1:41,14:32:55:0.255:2	0/1:77,6:32:84:0.072:2	0/1:122,15:33:138:0.109:2	0/1:122,32:32:154:0.208:2	0/1:80,29:32:109:0.266:2
chr15	21063541	.	G	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:166,15:32:181:0.083:2	0/1:48,18:31:66:0.273:2	./.	./.	./.	0/1:131,28:33:159:0.176:2	./.	0/1:126,6:34:133:0.045:2
chr15	21066391	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:196,4:33:200:0.020:2	./.	./.	0/1:174,7:30:181:0.039:2	./.	./.	./.	./.	./.	./.
chr15	21066398	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,6:31:195:0.031:2	./.	./.	./.	./.	./.
chr15	21066428	rs200251643	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:173,22:34:195:0.113:2	0/1:167,29:32:196:0.148:2	0/1:73,37:32:110:0.336:2	./.	./.	./.	0/1:143,42:32:185:0.227:2	0/1:152,47:32:199:0.236:2	./.	0/1:160,38:33:198:0.192:2	0/1:117,79:33:196:0.403:2
chr15	21066432	rs201059330	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:140,59:33:199:0.296:2	0/1:158,38:32:196:0.194:2	./.	./.	./.	0/1:126,70:34:196:0.357:2	0/1:179,20:34:199:0.101:2	0/1:177,19:33:196:0.097:2
chr15	21066437	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,48:31:193:0.249:2	./.	./.	./.
chr15	21066477	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:33:198:0.025:2	./.	./.	./.	./.	./.
chr15	21066491	rs368287796	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:119,70:31:189:0.370:2	0/1:130,56:31:186:0.301:2	0/1:80,23:30:103:0.223:2	0/1:177,19:31:196:0.097:2	0/1:140,20:31:160:0.125:2	0/1:66,115:31:181:0.635:2	0/1:106,26:31:132:0.197:2	0/1:126,62:30:188:0.330:2	./.	./.	0/1:171,24:31:196:0.123:2
chr15	21066492	rs199853507	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:167,21:33:189:0.112:2	0/1:170,20:32:190:0.105:2	0/1:91,12:31:103:0.117:2	./.	./.	./.	./.	0/1:130,55:32:185:0.297:2	./.	./.	0/1:162,28:33:190:0.147:2
chr15	22368862	rs1835183	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,156:32:193:0.808:2	0/1:35,155:32:190:0.816:2	0/1:37,21:31:58:0.362:2	0/1:66,129:31:195:0.662:2	0/1:9,168:32:177:0.949:2	0/1:4,179:31:183:0.978:2	0/1:125,75:31:200:0.375:2	0/1:14,154:32:168:0.917:2	0/1:0,140:32:140:1.00:2	0/1:88,109:32:197:0.553:2	0/1:97,96:32:193:0.497:2
chr15	22368905	rs1835182	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,156:33:192:0.813:2	0/1:46,134:32:180:0.744:2	0/1:35,20:32:55:0.364:2	0/1:63,116:32:180:0.648:2	0/1:8,181:32:190:0.958:2	0/1:3,178:32:181:0.983:2	0/1:123,67:32:190:0.353:2	0/1:13,178:32:191:0.932:2	0/1:0,169:33:169:1.00:2	0/1:69,108:33:177:0.610:2	0/1:91,103:33:194:0.531:2
chr15	22368936	rs11857531	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:136,54:30:190:0.284:2	./.	./.	./.	./.	./.	./.	./.
chr15	22369248	rs491208	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,148:33:190:0.779:2	0/1:34,149:33:183:0.814:2	0/1:0,130:32:130:1.00:2	0/1:80,112:33:192:0.583:2	0/1:0,185:32:185:1.00:2	0/1:0,176:32:176:1.00:2	0/1:0,192:33:192:1.00:2	0/1:0,174:33:174:1.00:2	0/1:0,152:33:152:1.00:2	0/1:0,183:33:183:1.00:2	0/1:0,188:33:189:1.00:2
chr15	22369281	rs140783867	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,61:31:155:0.394:2	./.	./.
chr15	22369290	rs12593418	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:165,23:30:188:0.122:2	0/1:167,23:31:190:0.121:2	./.	./.	0/1:67,114:30:181:0.630:2	0/1:131,49:29:180:0.272:2	0/1:162,29:31:191:0.152:2	0/1:194,4:32:198:0.020:2	0/1:89,66:31:155:0.426:2	0/1:74,116:31:190:0.611:2	0/1:156,37:31:193:0.192:2
chr15	22369426	rs4087943	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:152,36:32:190:0.191:2	0/1:131,62:32:193:0.321:2	0/1:18,14:29:32:0.438:2	0/1:109,62:32:173:0.363:2	0/1:51,70:31:122:0.579:2	0/1:122,50:31:175:0.291:2	0/1:42,117:31:159:0.736:2	0/1:73,45:31:120:0.381:2	0/1:0,115:33:115:1.00:2	0/1:0,137:32:137:1.00:2	0/1:74,123:32:198:0.624:2
chr15	22382655	rs535034	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,11:33:20:0.550:2	./.	0/1:121,25:31:146:0.171:2	./.	0/1:128,29:32:157:0.185:2	0/1:93,37:32:130:0.285:2	./.	./.	0/1:119,58:32:177:0.328:2
chr15	22382704	rs62006708	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:119,73:32:193:0.380:2	0/1:112,62:32:174:0.356:2	./.	0/1:140,34:31:174:0.195:2	./.	0/1:106,73:31:180:0.408:2	./.	./.	./.	0/1:142,41:32:183:0.224:2	./.
chr15	22382728	rs2808136	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:32:12:0.583:2	./.	0/1:110,22:32:133:0.167:2	./.	0/1:119,24:32:143:0.168:2	0/1:89,27:32:116:0.233:2	./.	./.	0/1:131,38:32:170:0.225:2
chr15	22382739	rs2671839	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,162:32:162:1.00:2	0/1:0,160:32:160:1.00:2	0/1:0,9:31:9:1.00:2	0/1:2,115:32:117:0.983:2	0/1:0,96:31:97:1.00:2	0/1:0,139:32:139:1.00:2	0/1:2,95:33:97:0.979:2	0/1:1,95:32:96:0.990:2	0/1:0,132:34:132:1.00:2	0/1:0,101:33:101:1.00:2	0/1:0,151:32:151:1.00:2
chr15	22382821	rs12438969	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,19:32:21:0.905:2	./.	0/1:151,41:32:192:0.214:2	./.	0/1:101,48:31:149:0.322:2	0/1:104,61:32:165:0.370:2	./.	./.	0/1:102,90:33:192:0.469:2
chr15	22382828	rs62006709	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,20:29:22:0.909:2	./.	0/1:150,42:29:192:0.219:2	./.	0/1:109,57:30:166:0.343:2	0/1:115,72:30:189:0.385:2	./.	./.	0/1:147,43:31:190:0.226:2
chr15	22382836	rs189796943	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:33:191:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	22382897	rs62006710	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:104,89:33:193:0.461:2	0/1:107,91:32:198:0.460:2	./.	0/1:140,56:33:196:0.286:2	./.	0/1:67,125:32:192:0.651:2	./.	./.	./.	0/1:98,84:33:182:0.462:2	./.
chr15	22382928	rs370997843	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:130,41:8:171:0.240:2	0/1:141,48:7:189:0.254:2	0/1:140,35:8:175:0.200:2	0/1:134,48:9:184:0.264:2	0/1:146,40:8:186:0.215:2	./.	0/1:125,42:9:167:0.251:2	0/1:138,29:11:167:0.174:2
chr15	22383064	rs12441468	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,17:29:18:0.944:2	./.	0/1:125,48:29:173:0.277:2	./.	0/1:91,89:29:180:0.494:2	0/1:101,70:30:171:0.409:2	./.	./.	0/1:103,88:30:191:0.461:2
chr15	22383066	rs559754	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:116,72:33:188:0.383:2	0/1:117,66:32:183:0.361:2	0/1:0,17:32:17:1.00:2	0/1:115,61:33:176:0.347:2	0/1:0,164:32:164:1.00:2	0/1:136,40:32:176:0.227:2	0/1:5,173:32:178:0.972:2	0/1:4,163:32:167:0.976:2	0/1:0,168:33:168:1.00:2	0/1:78,68:33:146:0.466:2	0/1:0,189:33:189:1.00:2
chr15	22383189	rs1820851	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:142,53:33:195:0.272:2	0/1:136,63:32:199:0.317:2	./.	0/1:143,55:32:198:0.278:2	0/1:77,115:31:192:0.599:2	0/1:134,57:31:192:0.298:2	0/1:105,80:32:186:0.432:2	0/1:109,81:32:190:0.426:2	0/1:1,168:33:169:0.994:2	0/1:80,83:32:163:0.509:2	0/1:106,80:32:186:0.430:2
chr15	22413700	rs267612	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,193:33:194:0.995:2	0/1:0,191:32:191:1.00:2	0/1:10,20:33:30:0.667:2	0/1:1,168:32:169:0.994:2	0/1:1,134:32:135:0.993:2	0/1:1,159:32:160:0.994:2	0/1:69,101:32:170:0.594:2	0/1:67,77:31:144:0.535:2	0/1:0,104:33:105:1.00:2	0/1:0,118:32:118:1.00:2	0/1:45,146:32:191:0.764:2
chr15	22413717	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,8:32:37:0.216:2	./.	0/1:162,24:31:186:0.129:2	0/1:186,4:32:190:0.021:2	0/1:182,14:32:196:0.071:2	0/1:165,12:32:177:0.068:2	./.	./.	0/1:165,25:32:190:0.132:2
chr15	22413810	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:33:191:0.021:2
chr15	22413825	rs267613	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:124,65:33:189:0.344:2	0/1:127,61:32:188:0.324:2	./.	0/1:143,50:33:193:0.259:2	0/1:129,69:31:198:0.348:2	0/1:121,74:31:196:0.379:2	0/1:152,47:33:199:0.236:2	0/1:88,105:33:193:0.544:2	0/1:7,171:33:178:0.961:2	0/1:134,49:33:183:0.268:2	0/1:131,57:33:188:0.303:2
chr15	22413912	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,14:15:193:0.073:2
chr15	22413917	rs373901202	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:148,31:11:180:0.173:2	./.	0/1:44,16:10:60:0.267:2	0/1:149,32:8:181:0.177:2	./.	0/1:143,38:8:181:0.210:2	0/1:133,47:6:180:0.261:2	0/1:134,47:8:181:0.260:2	./.	0/1:135,32:9:167:0.192:2	0/1:139,40:10:179:0.223:2
chr15	22413940	rs7167256	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:147,28:30:179:0.160:2	0/1:156,25:30:181:0.138:2	0/1:27,24:28:52:0.471:2	./.	./.	./.	0/1:123,64:27:188:0.342:2	./.	./.	0/1:121,42:28:164:0.258:2	0/1:141,26:27:168:0.156:2
chr15	22413954	rs1810247	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:106,75:32:181:0.414:2	0/1:104,82:32:186:0.441:2	./.	0/1:131,52:32:183:0.284:2	0/1:135,50:32:185:0.270:2	0/1:69,117:32:186:0.629:2	./.	./.	./.	0/1:125,55:32:180:0.306:2	./.
chr15	22414005	rs59278647	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:104,89:33:193:0.461:2	0/1:111,87:32:198:0.439:2	./.	0/1:128,64:33:192:0.333:2	0/1:134,56:32:190:0.295:2	0/1:74,119:32:193:0.617:2	./.	./.	./.	0/1:146,51:32:197:0.259:2	./.
chr15	22414053	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:189,5:31:194:0.026:2	./.	./.	0/1:190,8:29:198:0.040:2	./.	./.	./.
chr15	22414067	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:179,4:32:183:0.022:2	./.	./.	0/1:182,9:33:191:0.047:2	0/1:188,7:33:195:0.036:2	./.	./.
chr15	22414190	rs28695837	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:107,86:32:193:0.446:2	0/1:86,100:32:186:0.538:2	./.	0/1:137,56:32:193:0.290:2	0/1:113,63:32:176:0.358:2	0/1:61,122:32:183:0.667:2	./.	./.	./.	0/1:134,58:32:192:0.302:2	./.
chr15	22414262	rs1429510	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:148,31:32:179:0.173:2	0/1:131,26:32:157:0.166:2	0/1:10,18:32:28:0.643:2	./.	./.	0/1:131,4:31:135:0.030:2	0/1:61,66:32:127:0.520:2	./.	./.	0/1:83,46:33:129:0.357:2	0/1:139,44:32:183:0.240:2
chr15	22840279	rs61744212	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:46,44:32:90:0.489:2	0/1:32,21:32:54:0.396:2	./.	./.	./.	./.	./.	./.	./.	0/1:53,35:32:88:0.398:2	./.
chr15	22850925	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:34:198:0.020:2
chr15	22867570	rs62009514	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,100:31:196:0.510:2	./.	./.	./.	./.
chr15	22925851	rs4134802	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,23:31:44:0.523:2	./.	./.	./.	./.	0/1:11,14:31:25:0.560:2
chr15	22939192	rs11633474	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,9:31:15:0.600:2	0/1:95,64:32:160:0.403:2	./.	0/1:0,132:31:133:1.00:2	0/1:68,38:31:107:0.358:2	0/1:117,63:31:180:0.350:2	0/1:0,160:32:160:1.00:2	0/1:84,47:31:132:0.359:2	0/1:111,75:32:187:0.403:2
chr15	22960868	rs2289818	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,19:33:51:0.373:2	0/1:11,15:33:26:0.577:2	0/1:4,6:33:10:0.600:2	0/1:45,36:33:81:0.444:2	0/1:55,28:32:83:0.337:2	0/1:45,30:32:75:0.400:2	./.	./.	0/1:43,33:34:76:0.434:2	./.	0/1:35,31:32:66:0.470:2
chr15	22969232	rs7170637	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:34,27:31:61:0.443:2	0/1:14,12:33:26:0.462:2	0/1:9,4:32:13:0.308:2	./.	0/1:82,75:32:157:0.478:2	0/1:58,59:32:117:0.504:2	./.	0/1:57,55:32:112:0.491:2	0/1:39,46:34:85:0.541:2	./.	./.
chr15	22969253	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:28:65:0.062:2	./.
chr15	23014485	rs200682111	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,17:13:64:0.266:2	0/1:69,11:14:80:0.138:2	0/1:76,16:12:92:0.174:2	./.	0/1:54,8:16:62:0.129:2
chr15	23021238	rs145147241	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,56:32:56:1.00:2	./.	0/1:32,19:32:51:0.373:2	./.	./.	./.	./.	0/1:2,55:32:57:0.965:2
chr15	23052632	rs11263683	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:30:74:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,7:31:7:1.00:2	0/1:1,107:30:108:0.991:2	./.	0/1:44,39:30:83:0.470:2	0/1:3,99:30:102:0.971:2	0/1:0,131:29:131:1.00:2	0/1:54,63:31:117:0.538:2	0/1:0,108:29:108:1.00:2	0/1:0,90:29:90:1.00:2
chr15	23260868	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:124,34:32:158:0.215:2	./.	./.	./.	./.	./.	./.
chr15	23261024	rs146352451	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,59:32:134:0.440:2	./.
chr15	23811463	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,13:11:71:0.186:2	./.	./.	./.	./.
chr15	23811592	rs2239669	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,14:32:32:0.438:2	0/1:13,10:32:23:0.435:2	./.	0/1:0,31:32:31:1.00:2	0/1:24,16:32:40:0.400:2	./.	./.	./.
chr15	23889739	rs2233070	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,56:32:109:0.514:2	0/1:37,35:32:72:0.486:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	23931507	rs2192206	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,13:31:26:0.500:2	0/1:8,6:30:14:0.429:2	./.	0/1:11,8:32:19:0.421:2	0/1:9,3:32:12:0.250:2	./.	0/1:10,9:31:19:0.474:2	0/1:10,8:30:18:0.444:2	./.	0/1:10,11:32:21:0.524:2	./.
chr15	23932467	rs3743340	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,3:31:3:1.00:2	./.	./.	0/1:0,2:27:2:1.00:2	0/1:0,3:32:3:1.00:2	./.	./.	0/1:0,4:31:4:1.00:2	./.	0/1:0,3:33:3:1.00:2	./.
chr15	24921649	rs3784246	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,15:32:47:0.319:2	./.	0/1:17,15:32:32:0.469:2	./.
chr15	24921771	rs1563102	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,12:30:33:0.364:2	0/1:9,14:29:23:0.609:2	./.	0/1:12,15:28:27:0.556:2	0/1:18,17:29:35:0.486:2	./.	./.	./.	0/1:26,17:31:43:0.395:2	0/1:13,11:30:24:0.458:2	0/1:19,16:29:35:0.457:2
chr15	24921779	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,4:28:42:0.095:2	./.	./.	./.	./.	./.	./.
chr15	24922208	rs12905237	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,20:29:48:0.417:2	0/1:19,13:27:32:0.406:2	0/1:9,17:27:26:0.654:2	./.	./.
chr15	24922230	rs3742950	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,19:31:41:0.463:2	./.	./.	0/1:40,30:32:70:0.429:2	0/1:2,44:31:46:0.957:2	0/1:15,24:32:39:0.615:2	0/1:22,12:31:34:0.353:2	0/1:14,19:33:33:0.576:2
chr15	24922407	rs79339610	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,24:30:66:0.364:2	./.	./.	./.	./.	./.	./.	./.
chr15	24922545	rs148389942	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:33:133:0.030:2	./.	./.	./.
chr15	24922680	rs145986160	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,73:29:161:0.453:2	./.	./.	./.	./.
chr15	24923390	rs60574723	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,18:31:54:0.333:2	./.	./.	0/1:24,23:31:47:0.489:2	0/1:0,47:30:47:1.00:2	0/1:21,32:32:53:0.604:2	0/1:17,15:31:32:0.469:2	0/1:36,17:32:53:0.321:2
chr15	24924090	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:31:106:0.038:2	./.	./.	./.
chr15	24924663	rs12902137	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,78:29:163:0.479:2	0/1:1,130:29:131:0.992:2	0/1:98,76:30:174:0.437:2	0/1:51,65:29:116:0.560:2	./.
chr15	24924729	rs12902295	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,37:32:86:0.430:2	0/1:2,72:32:74:0.973:2	0/1:53,44:31:97:0.454:2	0/1:26,27:31:53:0.509:2	./.
chr15	24924840	rs117968372	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,30:32:74:0.405:2	./.	./.	./.
chr15	24925133	rs78283094	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,44:32:109:0.404:2	./.	./.	./.	./.	./.	./.	0/1:100,29:31:129:0.225:2
chr15	24925172	rs80020146	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,48:31:84:0.571:2
chr15	24925255	rs112526219	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,12:31:17:0.706:2
chr15	24925368	rs111788152	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,8:24:28:0.286:2	./.	./.	./.	./.	./.	./.	./.
chr15	24925755	rs112263292	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:33:60:0.067:2	./.	./.
chr15	24925761	rs202038460	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,7:32:38:0.184:2	./.	./.
chr15	24926402	rs35903521	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,11:32:23:0.478:2	0/1:17,11:31:28:0.393:2	0/1:20,18:32:38:0.474:2	./.	./.
chr15	24926940	rs12899372	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,5:33:25:0.200:2	./.	./.
chr15	24927343	rs116964059	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,16:33:37:0.432:2	./.	./.	./.
chr15	24927808	rs17114592	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,82:33:180:0.456:2	./.	./.	./.	./.	./.	./.	./.
chr15	25620722	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:33:93:0.043:2	./.	./.
chr15	25654289	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:31:104:0.038:2	./.	./.	./.
chr15	25924539	rs1047700	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,32:32:47:0.681:2	./.	./.	./.	0/1:24,11:34:35:0.314:2	0/1:0,28:33:28:1.00:2	./.
chr15	25925094	rs3816800	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:32:9:1.00:2	0/1:0,4:29:4:1.00:2	./.	./.	./.	0/1:1,7:31:8:0.875:2	./.	0/1:2,4:31:6:0.667:2	0/1:0,6:32:6:1.00:2	./.	./.
chr15	25925438	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:31:50:0.080:2	./.
chr15	25926179	rs2076744	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,5:31:7:0.714:2	0/1:36,35:30:71:0.493:2	0/1:31,39:29:70:0.557:2	./.	./.	./.	0/1:44,33:31:77:0.429:2	0/1:1,87:30:88:0.989:2	./.
chr15	25926186	rs2076743	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,42:32:43:0.977:2	0/1:0,28:32:28:1.00:2	0/1:3,6:32:9:0.667:2	0/1:42,37:32:79:0.468:2	0/1:38,38:32:76:0.500:2	0/1:48,37:31:85:0.435:2	0/1:44,18:31:62:0.290:2	0/1:60,48:32:108:0.444:2	0/1:0,88:33:88:1.00:2	0/1:0,92:33:92:1.00:2	./.
chr15	25926198	rs2076742	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:35,19:32:54:0.352:2	0/1:18,18:32:36:0.500:2	./.	./.	./.	./.	0/1:51,26:31:77:0.338:2	./.	./.	./.	./.
chr15	25926204	rs2076741	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:34,24:33:58:0.414:2	0/1:19,19:32:38:0.500:2	./.	./.	./.	./.	0/1:49,28:32:77:0.364:2	./.	./.	./.	./.
chr15	25953442	rs2066704	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,32:31:59:0.542:2	./.	./.	./.	./.
chr15	25961964	rs10873607	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:31:96:1.00:2	0/1:0,64:30:64:1.00:2	0/1:0,26:30:26:1.00:2	0/1:75,58:31:133:0.436:2	0/1:0,145:30:146:1.00:2	0/1:0,130:31:130:1.00:2	0/1:0,149:31:149:1.00:2	0/1:0,126:30:126:1.00:2	0/1:0,112:31:112:1.00:2	0/1:0,113:30:113:1.00:2	0/1:0,126:30:126:1.00:2
chr15	25962058	rs2066703	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,28:32:61:0.459:2	./.	./.	./.	./.
chr15	25969090	rs17116056	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,21:30:73:0.288:2	./.	./.	./.	./.
chr15	25972309	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,25:29:85:0.294:2	./.	./.	./.	./.	./.
chr15	25981223	rs75541743	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,46:33:91:0.505:2	./.
chr15	26026311	rs146522541	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,22:32:48:0.468:2	./.
chr15	26806154	rs74907974	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,52:31:112:0.464:2
chr15	26812780	rs76812964	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,27:32:50:0.540:2	./.
chr15	27017536	rs8179186	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,14:27:32:0.438:2	0/1:6,9:31:15:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	27018797	rs20318	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,8:29:26:0.308:2	0/1:2,5:31:7:0.714:2	./.	./.	./.	0/1:8,12:30:20:0.600:2	./.	./.	./.	./.	./.
chr15	27182357	rs140682	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,80:33:80:1.00:2	0/1:0,59:32:59:1.00:2	./.	0/1:59,62:32:121:0.512:2	0/1:64,73:31:138:0.533:2	0/1:0,128:33:128:1.00:2	./.	./.	0/1:42,62:34:104:0.596:2	./.	0/1:2,102:33:104:0.981:2
chr15	27188459	rs140685	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,44:33:73:0.603:2	0/1:24,14:32:38:0.368:2	0/1:0,16:32:16:1.00:2	0/1:51,47:32:98:0.480:2	0/1:57,40:32:97:0.412:2	./.	0/1:1,113:32:114:0.991:2	0/1:1,118:32:119:0.992:2	0/1:61,59:33:120:0.492:2	0/1:0,63:33:63:1.00:2	./.
chr15	27193125	rs2229942	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,35:30:77:0.455:2	./.	./.
chr15	27216746	rs2288694	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:30:12:0.583:2	0/1:0,6:31:6:1.00:2	0/1:2,10:30:12:0.833:2	./.	./.	0/1:7,8:32:15:0.533:2	./.	0/1:0,2:31:2:1.00:2
chr15	27573968	rs140674	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,55:31:148:0.372:2	./.	./.	./.	./.	./.
chr15	27772676	rs140679	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:64,53:32:117:0.453:2	0/1:29,20:32:49:0.408:2	0/1:8,9:32:17:0.529:2	./.	0/1:2,183:32:185:0.989:2	0/1:66,73:32:140:0.525:2	./.	0/1:2,178:32:180:0.989:2	./.	0/1:70,44:32:114:0.386:2	0/1:0,105:32:105:1.00:2
chr15	27773112	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,4:32:52:0.077:2	./.	./.	./.	./.	./.	./.	./.
chr15	28090173	rs12592307	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:46,45:32:91:0.495:2	0/1:42,14:32:56:0.250:2	./.	./.	./.	./.	./.	0/1:90,61:32:151:0.404:2	0/1:71,64:33:135:0.474:2	./.	./.
chr15	28096538	rs1800419	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:32:8:0.375:2	0/1:1,96:32:97:0.990:2	0/1:0,110:32:110:1.00:2	0/1:51,69:32:120:0.575:2	0/1:2,94:33:96:0.979:2	./.	./.	0/1:0,72:32:72:1.00:2	0/1:0,55:33:55:1.00:2
chr15	28211921	rs1800411	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:31:48:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,3:31:3:1.00:2	0/1:39,38:31:77:0.494:2	0/1:0,61:31:61:1.00:2	0/1:1,88:30:89:0.989:2	./.	./.	0/1:0,72:32:72:1.00:2	0/1:0,50:31:50:1.00:2	0/1:52,43:31:95:0.453:2
chr15	28230318	rs1800407	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,42:31:96:0.438:2	0/1:39,38:32:77:0.494:2	./.	./.	./.
chr15	28231793	rs10852218	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,163:29:164:0.994:2	0/1:0,109:29:109:1.00:2	0/1:0,22:30:22:1.00:2	0/1:100,81:29:181:0.448:2	0/1:0,109:29:109:1.00:2	0/1:0,173:29:173:1.00:2	./.	./.	0/1:0,168:30:168:1.00:2	0/1:0,172:30:172:1.00:2	0/1:98,71:29:169:0.420:2
chr15	28235773	rs1800404	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:33:33:1.00:2	0/1:1,18:33:19:0.947:2	0/1:0,6:33:6:1.00:2	0/1:1,38:32:39:0.974:2	0/1:0,80:32:80:1.00:2	0/1:0,59:32:59:1.00:2	./.	0/1:38,48:33:86:0.558:2	0/1:0,47:32:47:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,43:32:43:1.00:2
chr15	28386626	rs11636232	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:31:5:0.800:2	./.	0/1:50,46:31:96:0.479:2	./.	0/1:73,51:31:124:0.411:2	./.	0/1:0,83:32:83:1.00:2	./.	./.
chr15	28387408	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	28387460	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:171,4:32:175:0.023:2	./.	./.	./.	./.	./.	./.	0/1:167,4:33:171:0.023:2
chr15	28412872	rs61756152	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:33,15:32:48:0.313:2	0/1:9,16:32:25:0.640:2	./.	./.	./.	./.	0/1:24,24:33:48:0.500:2	0/1:27,30:32:57:0.526:2	./.	./.	./.
chr15	28414665	rs7494786	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:31:73:1.00:2	0/1:0,42:30:42:1.00:2	0/1:0,13:31:13:1.00:2	0/1:57,47:31:104:0.452:2	0/1:1,86:31:87:0.989:2	0/1:0,106:31:106:1.00:2	0/1:0,82:30:82:1.00:2	0/1:1,80:30:81:0.988:2	0/1:0,96:31:96:1.00:2	0/1:0,98:30:98:1.00:2	0/1:0,115:30:115:1.00:2
chr15	28419566	rs201182375	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:176,19:30:195:0.097:2	0/1:176,21:31:197:0.107:2	./.	0/1:150,46:31:196:0.235:2	0/1:177,14:31:191:0.073:2	./.	0/1:163,35:32:198:0.177:2	./.
chr15	28419587	rs142399136	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:161,28:32:189:0.148:2	0/1:145,38:32:183:0.208:2	0/1:38,10:32:48:0.208:2	./.	./.	./.	./.	0/1:149,42:32:191:0.220:2	./.	./.	./.
chr15	28419619	rs141441362	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:155,27:29:182:0.148:2	0/1:162,30:30:192:0.156:2	./.	0/1:128,61:30:189:0.323:2	0/1:157,24:29:181:0.133:2	./.	0/1:140,48:31:188:0.255:2	./.
chr15	28419691	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,7:31:190:0.037:2	0/1:173,6:32:179:0.034:2	./.	0/1:185,5:32:190:0.026:2	./.
chr15	28419695	rs149592795	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:169,22:27:191:0.115:2	0/1:132,55:30:188:0.294:2	./.	0/1:153,39:30:192:0.203:2	0/1:164,16:31:180:0.089:2	./.	0/1:138,50:29:188:0.266:2	./.
chr15	28419713	rs113016718	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,24:33:96:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	28419746	rs139335991	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:130,9:31:139:0.065:2	0/1:123,22:31:145:0.152:2	0/1:55,10:31:65:0.154:2	0/1:164,7:29:171:0.041:2	0/1:127,51:30:178:0.287:2	./.	0/1:159,18:30:177:0.102:2	0/1:144,31:30:175:0.177:2	./.	0/1:144,20:31:164:0.122:2	./.
chr15	28422609	rs61756153	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:31:8:0.375:2	./.	./.	0/1:33,15:31:48:0.313:2	./.	./.	./.	0/1:0,42:31:42:1.00:2	./.
chr15	28437160	rs201095943	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,4:33:73:0.055:2	./.	./.	./.	./.	./.	./.	./.
chr15	28441645	rs373439273	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,106:31:193:0.549:2	./.	./.
chr15	28447294	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:130,60:31:190:0.316:2	./.	./.	./.	./.	./.	./.
chr15	28447322	rs148451375	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:163,14:31:177:0.079:2	./.	./.	./.	./.	./.	./.
chr15	28447562	rs146883683	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:148,49:33:197:0.249:2	0/1:186,6:33:192:0.031:2	0/1:192,4:34:196:0.020:2	0/1:192,6:26:198:0.030:2	0/1:191,5:34:196:0.026:2	./.	./.
chr15	28447602	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,19:32:172:0.110:2	0/1:92,17:32:109:0.156:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	28457665	rs201704003	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,12:30:197:0.061:2	0/1:188,11:33:199:0.055:2	./.	./.	0/1:182,13:34:195:0.067:2	./.
chr15	28458962	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:33:190:0.021:2
chr15	28459227	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:167,4:31:171:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr15	28459898	rs149498499	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,37:33:99:0.374:2	./.	./.	./.	./.	./.	./.	./.
chr15	28460775	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr15	28460840	rs141981089	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:119,4:31:123:0.033:2	./.	./.	0/1:80,4:32:84:0.048:2	./.	./.	./.	./.
chr15	28460853	rs202046283	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:32:73:0.055:2	./.	./.	./.	./.
chr15	28474371	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:31:158:0.025:2	./.	./.	./.	0/1:187,5:29:192:0.026:2
chr15	28478843	rs2525981	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:176,6:29:182:0.033:2	./.	./.	0/1:182,7:32:189:0.037:2	0/1:165,4:32:169:0.024:2	./.	0/1:164,4:32:168:0.024:2	./.	0/1:185,6:33:191:0.031:2	./.	./.
chr15	28479308	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:160,15:30:175:0.086:2	./.	./.	./.	./.	./.	./.
chr15	28479354	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,17:29:109:0.156:2	./.	./.	0/1:112,19:31:131:0.145:2	./.	./.
chr15	28479373	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,5:32:115:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	28483865	rs201929435	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,8:31:199:0.040:2	./.	./.	./.
chr15	28502279	rs11631797	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,28:31:48:0.583:2	0/1:17,21:31:38:0.553:2	0/1:4,3:32:7:0.429:2	0/1:52,46:32:98:0.469:2	0/1:1,68:31:70:0.986:2	0/1:36,26:31:62:0.419:2	0/1:33,32:32:65:0.492:2	0/1:51,49:31:100:0.490:2	0/1:0,80:32:80:1.00:2	./.	0/1:0,71:30:71:1.00:2
chr15	28517436	rs75181529	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,56:28:97:0.577:2	0/1:30,30:29:60:0.500:2	0/1:18,4:25:22:0.182:2	0/1:77,53:29:130:0.408:2	0/1:76,73:29:150:0.490:2	0/1:73,59:28:132:0.447:2	0/1:80,71:29:151:0.470:2	0/1:87,67:28:154:0.435:2	0/1:78,61:30:139:0.439:2	0/1:75,80:29:155:0.516:2	0/1:83,59:29:142:0.415:2
chr15	28517508	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,14:32:83:0.169:2	./.	./.	./.
chr15	28632760	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:133,60:30:193:0.311:2	0/1:167,30:32:197:0.152:2	0/1:184,12:28:196:0.061:2	0/1:188,8:32:196:0.041:2	./.	./.	./.	0/1:176,12:30:188:0.064:2
chr15	28632786	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,6:28:191:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr15	28769142	rs139663833	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,109:30:146:0.752:2	./.	./.	./.	./.	./.	./.	./.
chr15	28769168	rs150644606	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:156,9:32:165:0.055:2	0/1:55,25:31:80:0.313:2	0/1:140,6:32:146:0.041:2	./.	./.	./.	./.	0/1:128,4:32:133:0.030:2
chr15	29346256	rs371759617	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,33:32:63:0.524:2
chr15	29346468	rs137995892	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,26:31:53:0.491:2	0/1:11,15:32:26:0.577:2	./.	./.	./.	./.	./.	./.	0/1:18,31:32:49:0.633:2	./.	./.
chr15	29368296	rs77089901	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,12:14:107:0.112:2	./.	./.
chr15	29415560	rs3751562	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,50:31:98:0.510:2	0/1:32,18:30:50:0.360:2	0/1:0,14:31:14:1.00:2	0/1:0,147:31:148:1.00:2	0/1:89,69:30:158:0.437:2	0/1:0,121:30:121:1.00:2	0/1:3,165:30:168:0.982:2	0/1:6,144:31:150:0.960:2	0/1:0,119:31:119:1.00:2	0/1:2,87:31:89:0.978:2	0/1:0,113:31:113:1.00:2
chr15	29415698	rs3751563	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:29:75:1.00:2	0/1:0,37:29:37:1.00:2	0/1:0,5:28:5:1.00:2	0/1:2,93:30:95:0.979:2	0/1:43,48:29:91:0.527:2	0/1:0,89:29:89:1.00:2	0/1:0,96:29:96:1.00:2	0/1:3,90:29:93:0.968:2	0/1:0,86:30:86:1.00:2	0/1:2,84:29:86:0.977:2	0/1:0,85:28:85:1.00:2
chr15	29415701	rs61736884	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,35:32:74:0.473:2	0/1:17,23:32:40:0.575:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	29416901	rs2279482	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,3:28:13:0.250:2	0/1:8,3:26:11:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	29418520	rs2256273	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,91:32:92:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,145:32:145:1.00:2	0/1:0,105:31:105:1.00:2	0/1:0,144:31:144:1.00:2	0/1:0,99:31:99:1.00:2	0/1:1,118:32:119:0.992:2	0/1:0,148:33:148:1.00:2	0/1:1,104:31:105:0.990:2	0/1:0,113:31:113:1.00:2
chr15	29418573	rs2672680	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:29:61:1.00:2	0/1:2,49:29:51:0.961:2	0/1:0,12:31:12:1.00:2	0/1:0,83:30:83:1.00:2	0/1:0,64:29:64:1.00:2	0/1:1,79:30:80:0.988:2	0/1:2,50:30:52:0.962:2	0/1:1,65:30:66:0.985:2	0/1:1,61:31:62:0.984:2	0/1:0,51:29:51:1.00:2	0/1:0,43:31:43:1.00:2
chr15	29418574	rs2256277	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:28:61:1.00:2	0/1:0,49:28:49:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,83:28:83:1.00:2	0/1:0,64:27:65:1.00:2	0/1:0,79:27:79:1.00:2	0/1:2,50:27:52:0.962:2	0/1:1,64:26:65:0.985:2	0/1:0,61:28:61:1.00:2	0/1:0,50:27:50:1.00:2	0/1:0,43:26:43:1.00:2
chr15	29421014	rs2306934	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,24:31:52:0.462:2	./.	./.	./.	./.
chr15	29429347	rs61741714	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,15:32:43:0.349:2
chr15	29443949	rs3764211	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,24:29:55:0.436:2	0/1:50,43:29:93:0.462:2	./.	./.	./.	./.	./.	0/1:15,12:30:27:0.444:2
chr15	29488709	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:32:79:0.051:2	./.
chr15	29544615	rs193194043	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,77:32:162:0.475:2	./.	./.
chr15	29544656	rs4583203	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:50,38:29:88:0.432:2	0/1:25,26:29:51:0.510:2	0/1:7,11:30:18:0.611:2	./.	0/1:36,39:30:75:0.520:2	0/1:56,86:29:143:0.606:2	0/1:60,59:28:119:0.496:2	0/1:79,65:29:144:0.451:2	0/1:74,66:30:140:0.471:2	0/1:0,106:29:106:1.00:2	0/1:0,110:28:111:1.00:2
chr15	29561416	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:31:70:0.057:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	29561868	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,3:28:8:0.375:2	0/1:3,3:28:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	29561869	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:32:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	30008856	rs7166878	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:32:37:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,65:33:65:1.00:2
chr15	30008889	rs2229518	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,14:32:14:1.00:2	0/1:0,65:33:65:1.00:2	0/1:0,56:31:56:1.00:2	0/1:2,45:31:47:0.957:2	0/1:0,26:31:26:1.00:2	0/1:28,15:31:43:0.349:2	0/1:0,68:32:68:1.00:2	0/1:0,63:31:63:1.00:2	./.
chr15	30008977	rs2291166	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,43:32:80:0.538:2
chr15	30018627	rs2229515	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,45:32:86:0.523:2	./.	./.	./.	./.
chr15	30053844	rs17671751	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,96:33:190:0.505:2	0/1:64,76:33:140:0.543:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	30654539	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,10:29:29:0.345:2	0/1:127,52:31:179:0.291:2	0/1:143,56:31:199:0.281:2	./.	./.	./.	0/1:127,47:32:174:0.270:2	./.	./.
chr15	30654651	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,44:31:192:0.229:2	./.	./.	./.	./.	./.
chr15	30654670	rs200433111	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:126,26:30:152:0.171:2	0/1:85,26:31:111:0.234:2	0/1:18,8:30:26:0.308:2	0/1:163,22:30:185:0.119:2	./.	0/1:153,37:30:190:0.195:2	0/1:90,36:31:126:0.286:2	./.	./.	0/1:80,76:30:156:0.487:2	0/1:78,61:30:139:0.439:2
chr15	30654736	rs201668516	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,47:30:135:0.348:2	0/1:43,19:31:62:0.306:2	0/1:7,13:30:20:0.650:2	0/1:70,22:29:92:0.239:2	0/1:33,58:29:91:0.637:2	0/1:93,27:30:120:0.225:2	0/1:33,36:29:69:0.522:2	0/1:36,57:30:93:0.613:2	0/1:85,27:31:112:0.241:2	./.	./.
chr15	30654961	rs201471858	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:131,47:32:178:0.264:2	0/1:70,23:32:93:0.247:2	./.	./.	./.	./.	./.	0/1:124,68:32:192:0.354:2	./.	./.	./.
chr15	30663320	rs201185507	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,45:33:192:0.234:2	0/1:150,45:32:195:0.231:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	30664453	rs149526715	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,17:31:63:0.270:2	0/1:17,10:31:27:0.370:2	0/1:4,4:30:8:0.500:2	0/1:25,157:30:183:0.863:2	0/1:25,148:31:173:0.855:2	0/1:11,183:31:194:0.943:2	0/1:59,32:31:91:0.352:2	./.	0/1:26,133:31:159:0.836:2	0/1:14,158:32:172:0.919:2	0/1:10,177:31:188:0.947:2
chr15	30664489	rs200611153	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:28:6:0.667:2	./.	./.	./.
chr15	30669323	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:163,33:33:196:0.168:2	./.	./.	./.	./.	./.	./.	./.
chr15	30675505	rs202209324	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,6:34:193:0.031:2	0/1:189,6:33:195:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	30675581	rs201569187	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,11:32:116:0.095:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,6:32:154:0.039:2
chr15	30919043	rs200888956	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,12:19:117:0.103:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	31197564	rs4779794	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,10:31:28:0.357:2	0/1:15,25:31:41:0.625:2	0/1:19,15:31:34:0.441:2	./.	0/1:22,21:31:43:0.488:2	0/1:0,36:33:36:1.00:2	./.	0/1:15,16:31:31:0.516:2
chr15	31197976	rs114136100	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,53:33:109:0.486:2	0/1:41,31:32:72:0.431:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	31202845	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	31202961	rs150393409	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,40:32:105:0.381:2	0/1:40,34:31:74:0.459:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	31210406	rs118060760	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:33:14:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	31229420	rs2955795	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,26:29:65:0.400:2	0/1:21,12:29:33:0.364:2	0/1:41,19:29:60:0.317:2	./.	0/1:43,20:29:63:0.317:2	0/1:0,66:30:66:1.00:2	./.	0/1:2,56:30:58:0.966:2
chr15	31234064	rs6493352	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,80:32:139:0.576:2	0/1:43,46:31:89:0.517:2	./.	./.	./.	0/1:91,70:31:161:0.435:2	0/1:101,66:32:167:0.395:2	./.	./.	0/1:0,120:32:120:1.00:2	./.
chr15	31267123	rs77719498	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:22,19:32:41:0.463:2	0/1:11,11:32:22:0.500:2	0/1:3,3:31:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	31267147	rs1133642	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,22:32:40:0.550:2	0/1:23,8:30:31:0.258:2	0/1:17,24:31:41:0.585:2	./.	0/1:44,18:32:62:0.290:2	0/1:0,42:32:42:1.00:2	./.	0/1:0,55:32:55:1.00:2
chr15	31269104	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,13:17:158:0.083:2	./.
chr15	31294189	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:32:117:0.034:2	./.	./.	./.
chr15	31294451	rs16956430	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,50:32:103:0.485:2	./.	./.	./.	./.
chr15	31294654	rs3784588	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:68,56:31:124:0.452:2	0/1:43,32:31:75:0.427:2	0/1:7,9:30:16:0.563:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	31294996	rs117855013	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:32:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	31318415	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,6:31:58:0.103:2	./.	./.	./.
chr15	31329944	rs12911350	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,46:32:98:0.469:2	./.	0/1:47,39:32:86:0.453:2	./.	0/1:73,38:32:111:0.342:2	./.	./.	./.
chr15	31330280	rs2288242	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:30:59:1.00:2	0/1:0,55:29:55:1.00:2	0/1:0,17:29:17:1.00:2	0/1:0,82:30:82:1.00:2	0/1:2,53:30:55:0.964:2	0/1:0,108:30:108:1.00:2	0/1:0,64:30:64:1.00:2	0/1:2,121:30:123:0.984:2	0/1:96,50:30:146:0.342:2	0/1:0,84:30:84:1.00:2	0/1:70,54:29:124:0.435:2
chr15	31330313	rs12913672	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:19,21:31:40:0.525:2	0/1:19,22:30:41:0.537:2	./.	0/1:0,59:30:60:1.00:2	./.	0/1:35,32:30:67:0.478:2	0/1:24,24:30:48:0.500:2	0/1:29,52:30:81:0.642:2	./.	0/1:0,74:31:74:1.00:2	./.
chr15	31334362	rs17815774	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,59:32:137:0.434:2	./.	./.	./.	./.
chr15	31342744	rs1035705	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:82,68:33:150:0.453:2	0/1:58,40:32:98:0.408:2	0/1:0,13:32:13:1.00:2	./.	0/1:58,41:32:99:0.414:2	0/1:72,65:31:137:0.474:2	0/1:72,48:32:120:0.400:2	0/1:73,58:33:131:0.443:2	0/1:70,81:33:151:0.536:2	./.	0/1:58,88:33:146:0.603:2
chr15	31352816	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,6:32:125:0.048:2	./.	./.	./.
chr15	31362352	rs2241493	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:31:96:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,12:31:12:1.00:2	0/1:78,69:31:147:0.469:2	0/1:0,91:30:91:1.00:2	./.	0/1:0,134:31:134:1.00:2	0/1:2,131:31:133:0.985:2	0/1:80,70:31:150:0.467:2	0/1:0,92:31:92:1.00:2	0/1:94,64:31:158:0.405:2
chr15	31369123	rs4779816	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,71:30:72:0.986:2	0/1:1,45:29:46:0.978:2	0/1:0,11:30:11:1.00:2	0/1:46,34:30:80:0.425:2	0/1:0,67:30:68:1.00:2	0/1:0,67:30:67:1.00:2	0/1:0,52:29:52:1.00:2	0/1:52,38:29:90:0.422:2	0/1:52,53:31:105:0.505:2	0/1:0,70:31:70:1.00:2	0/1:0,110:30:110:1.00:2
chr15	31776837	rs76704217	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,63:33:142:0.444:2	./.	./.	./.	./.	./.	./.
chr15	31779709	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:135,4:33:139:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr15	31779741	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:31:99:0.040:2	./.	./.	./.	./.	./.
chr15	31793930	rs7164569	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,3:33:10:0.300:2	0/1:77,63:30:140:0.450:2	0/1:69,89:29:158:0.563:2	./.	./.	0/1:98,71:30:170:0.420:2	0/1:62,84:30:146:0.575:2	0/1:66,49:30:115:0.426:2	0/1:54,63:30:117:0.538:2
chr15	32446097	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:151,40:33:192:0.209:2	./.	./.	./.	./.	./.	./.	./.
chr15	32450704	rs201822909	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:146,35:30:181:0.193:2	0/1:151,44:31:195:0.226:2	0/1:59,22:31:81:0.272:2	0/1:142,55:31:197:0.279:2	0/1:137,53:30:190:0.279:2	0/1:183,10:32:193:0.052:2	0/1:145,41:30:186:0.220:2	./.	0/1:128,60:30:189:0.319:2	0/1:171,22:30:193:0.114:2	0/1:179,9:31:189:0.048:2
chr15	32451837	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,33:32:194:0.170:2	0/1:147,43:32:190:0.226:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	32455467	rs145019447	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,155:32:168:0.923:2	./.	./.	./.	./.	./.
chr15	32455479	rs149054547	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	0/1:6,3:28:9:0.333:2	0/1:2,3:28:5:0.600:2	./.	./.
chr15	32460194	rs142447447	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:100,43:32:144:0.301:2	0/1:82,27:32:109:0.248:2	./.	./.	./.	./.	./.	0/1:47,29:32:76:0.382:2	./.	./.	./.
chr15	32460419	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:84,41:30:125:0.328:2	0/1:45,22:31:67:0.328:2	0/1:4,7:30:11:0.636:2	0/1:120,31:28:151:0.205:2	0/1:34,67:30:101:0.663:2	0/1:99,46:31:145:0.317:2	0/1:32,31:30:63:0.492:2	0/1:39,94:30:133:0.707:2	0/1:84,26:30:110:0.236:2	./.	./.
chr15	32460485	rs200301018	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:133,51:31:184:0.277:2	0/1:91,33:31:124:0.266:2	0/1:13,8:30:21:0.381:2	0/1:148,37:30:185:0.200:2	./.	0/1:148,39:30:188:0.209:2	0/1:112,47:30:159:0.296:2	./.	./.	0/1:84,73:31:157:0.465:2	0/1:98,72:31:170:0.424:2
chr15	32460504	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,34:31:186:0.183:2	./.	./.	./.	./.	./.
chr15	32460616	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,13:31:25:0.520:2	0/1:144,49:32:193:0.254:2	0/1:146,45:31:191:0.236:2	./.	./.	./.	0/1:141,53:32:194:0.273:2	./.	./.
chr15	32928942	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:34:75:0.053:2	./.	./.	./.	./.	./.
chr15	32929624	rs34173159	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,44:33:82:0.537:2	0/1:34,23:32:57:0.404:2	0/1:48,31:32:79:0.392:2
chr15	33023486	rs12915554	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,28:30:72:0.389:2	0/1:0,75:30:75:1.00:2	0/1:53,39:31:92:0.424:2	0/1:55,36:30:91:0.396:2	./.	0/1:50,29:31:79:0.367:2	0/1:37,52:31:89:0.584:2
chr15	33023670	rs33963919	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:48,17:32:65:0.262:2	0/1:17,13:32:30:0.433:2	0/1:8,3:29:11:0.273:2	./.	0/1:30,32:31:62:0.516:2	0/1:0,61:30:61:1.00:2	0/1:34,16:31:50:0.320:2	0/1:0,60:31:60:1.00:2	0/1:0,75:33:75:1.00:2	0/1:28,34:31:62:0.548:2	0/1:38,36:32:74:0.486:2
chr15	33023685	rs17816260	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:46,20:32:66:0.303:2	0/1:17,12:31:29:0.414:2	0/1:5,3:34:8:0.375:2	./.	0/1:22,30:32:52:0.577:2	0/1:0,47:33:48:1.00:2	0/1:30,14:32:45:0.318:2	0/1:0,50:32:50:1.00:2	0/1:0,66:34:66:1.00:2	0/1:26,28:33:54:0.519:2	0/1:35,30:33:65:0.462:2
chr15	33023951	rs3743105	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:96,79:33:175:0.451:2	0/1:71,65:32:136:0.478:2	0/1:9,13:32:22:0.591:2	./.	0/1:89,77:32:166:0.464:2	0/1:2,184:32:186:0.989:2	0/1:103,60:32:163:0.368:2	0/1:0,186:32:186:1.00:2	0/1:1,187:33:188:0.995:2	0/1:82,99:33:182:0.547:2	0/1:99,91:33:190:0.479:2
chr15	33023985	rs3743104	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:93,81:33:174:0.466:2	0/1:59,61:32:120:0.508:2	0/1:9,12:33:21:0.571:2	./.	0/1:87,78:32:165:0.473:2	0/1:2,178:32:180:0.989:2	0/1:95,64:32:159:0.403:2	0/1:2,169:32:171:0.988:2	0/1:0,176:33:176:1.00:2	0/1:80,87:32:168:0.521:2	0/1:93,98:33:191:0.513:2
chr15	33024108	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,46:30:109:0.426:2
chr15	33024394	rs28482374	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:14,17:31:31:0.548:2	0/1:8,10:31:18:0.556:2	./.	./.	0/1:10,7:28:17:0.412:2	./.	./.	./.	./.	0/1:14,9:31:23:0.391:2	./.
chr15	33024455	rs7162202	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:32:3:1.00:2	0/1:13,14:28:27:0.519:2	./.	./.	0/1:6,8:28:14:0.571:2	./.	./.	./.	0/1:21,15:27:36:0.417:2
chr15	33024567	rs17525764	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:28,30:32:58:0.517:2	0/1:26,16:32:42:0.381:2	./.	./.	0/1:38,15:32:53:0.283:2	./.	./.	./.	./.	0/1:34,27:32:61:0.443:2	./.
chr15	33024645	rs75058002	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,34:32:65:0.523:2	./.	./.	./.	./.	./.	./.	./.
chr15	33024808	rs17228641	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:76,73:33:149:0.490:2	0/1:49,30:32:79:0.380:2	./.	./.	0/1:109,61:32:170:0.359:2	./.	./.	./.	./.	0/1:70,84:32:154:0.545:2	./.
chr15	33025627	rs3743103	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:18,16:32:34:0.471:2	0/1:10,11:32:21:0.524:2	0/1:6,3:32:9:0.333:2	./.	0/1:13,15:30:28:0.536:2	0/1:0,46:31:46:1.00:2	0/1:21,22:32:43:0.512:2	0/1:0,46:32:46:1.00:2	0/1:0,56:33:56:1.00:2	0/1:20,18:32:38:0.474:2	0/1:31,28:33:59:0.475:2
chr15	33025979	rs10318	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:30,19:33:49:0.388:2	0/1:20,6:32:26:0.231:2	./.	./.	./.	./.	./.	0/1:14,20:32:34:0.588:2	0/1:0,43:34:43:1.00:2	./.	./.
chr15	33026288	rs62002611	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,29:32:29:1.00:2	0/1:27,6:32:33:0.182:2	./.	./.	0/1:39,19:32:58:0.328:2	./.
chr15	33026667	rs1129456	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:36,23:31:59:0.390:2	0/1:19,10:31:29:0.345:2	./.	./.	0/1:13,17:30:30:0.567:2	./.	./.	./.	./.	0/1:19,13:31:32:0.406:2	./.
chr15	33066582	rs28569405	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:47,29:30:76:0.382:2	0/1:12,16:31:28:0.571:2	./.	./.	0/1:36,40:30:76:0.526:2	./.	./.	./.	./.	0/1:40,32:32:72:0.444:2	./.
chr15	33091079	rs7162695	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,56:32:57:0.982:2	0/1:36,28:34:64:0.438:2	./.	./.
chr15	33191023	rs173224	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,14:34:27:0.519:2	0/1:15,12:33:27:0.444:2	./.	./.	0/1:16,13:32:29:0.448:2	0/1:22,17:32:39:0.436:2	0/1:0,37:33:37:1.00:2	0/1:26,18:33:44:0.409:2	./.	0/1:0,17:32:17:1.00:2	0/1:0,48:33:48:1.00:2
chr15	33192236	rs75033201	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,9:20:55:0.164:2	./.	./.	0/1:45,9:15:55:0.167:2	0/1:26,9:12:35:0.257:2	0/1:57,11:16:68:0.162:2	0/1:36,8:14:44:0.182:2	./.	./.	0/1:51,17:15:68:0.250:2	0/1:46,16:19:62:0.258:2
chr15	33261185	rs117804335	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:32:4:0.750:2	0/1:2,6:31:8:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	33261232	rs2930131	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:14,7:31:21:0.333:2	0/1:8,7:32:15:0.467:2	0/1:0,7:31:7:1.00:2	./.	0/1:13,13:30:26:0.500:2	0/1:9,13:30:22:0.591:2	0/1:15,17:31:32:0.531:2	0/1:1,23:30:24:0.958:2	0/1:9,15:31:24:0.625:2	0/1:0,14:33:14:1.00:2	0/1:6,14:32:20:0.700:2
chr15	33300291	rs11630735	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,15:32:36:0.417:2	./.	./.	./.	./.	./.	./.	./.
chr15	33357262	rs2306277	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,6:31:12:0.500:2	0/1:64,37:32:101:0.366:2	0/1:47,29:31:76:0.382:2	0/1:1,78:31:79:0.987:2	0/1:2,59:31:61:0.967:2	0/1:54,52:30:106:0.491:2	0/1:64,49:32:113:0.434:2	0/1:34,36:31:70:0.514:2	0/1:53,44:31:98:0.454:2
chr15	33359063	rs202171796	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,10:33:16:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	33359370	rs11072170	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,23:31:63:0.365:2	0/1:34,19:31:53:0.358:2	0/1:53,24:32:77:0.312:2	0/1:26,25:31:51:0.490:2	0/1:31,30:32:61:0.492:2	0/1:27,26:33:53:0.491:2	./.	0/1:45,31:32:76:0.408:2
chr15	33359574	rs11858145	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,23:30:49:0.469:2	0/1:29,36:31:65:0.554:2	0/1:0,50:30:50:1.00:2	0/1:2,47:30:49:0.959:2	0/1:0,69:31:69:1.00:2	0/1:36,22:31:58:0.379:2	0/1:31,15:31:47:0.326:2	0/1:48,33:31:81:0.407:2
chr15	33840414	rs1435100	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:33:26:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,4:34:4:1.00:2	0/1:14,22:33:36:0.611:2	0/1:0,16:31:16:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,31:32:31:1.00:2	0/1:1,26:33:27:0.963:2	0/1:0,26:33:26:1.00:2	0/1:0,34:32:34:1.00:2
chr15	33842400	rs41279202	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,37:31:71:0.521:2	./.	./.	./.
chr15	33858935	rs11853872	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,9:31:19:0.474:2	./.	./.	./.	./.	./.	./.	0/1:75,71:32:146:0.486:2	./.
chr15	33872177	rs674155	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,24:31:24:1.00:2	0/1:1,17:31:19:0.944:2	./.	0/1:29,11:31:40:0.275:2	0/1:0,25:30:25:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,66:31:66:1.00:2	0/1:29,18:31:47:0.383:2	0/1:3,35:31:39:0.921:2
chr15	33873751	rs2077268	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,27:31:93:0.290:2	./.
chr15	33905410	rs2229116	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,7:27:16:0.438:2	./.	./.	./.	0/1:2,127:29:129:0.984:2	./.	0/1:56,53:29:109:0.486:2	./.	./.
chr15	33916053	rs2229117	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,86:33:193:0.446:2	./.	./.	0/1:90,65:32:155:0.419:2
chr15	33954652	rs4780144	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:33:48:1.00:2	0/1:0,24:32:24:1.00:2	0/1:3,5:32:8:0.625:2	0/1:0,63:32:63:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,81:32:81:1.00:2	0/1:48,34:32:82:0.415:2	0/1:0,71:33:71:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,53:32:53:1.00:2
chr15	34015013	rs2293027	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,16:30:46:0.348:2	./.	./.	0/1:35,22:28:58:0.386:2	./.	./.	./.	./.
chr15	34016274	rs6495228	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,32:33:57:0.561:2	0/1:26,12:33:38:0.316:2	0/1:0,4:31:4:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,82:31:82:1.00:2	0/1:0,79:32:79:1.00:2	0/1:27,30:32:57:0.526:2	0/1:0,75:31:75:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,84:31:84:1.00:2
chr15	34032131	rs41279212	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,23:33:67:0.343:2	./.
chr15	34042469	rs190036800	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,31:32:73:0.425:2	./.	./.	./.
chr15	34065761	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:32:113:0.035:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	34080588	rs55650127	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:31:8:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	34080645	rs61996336	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,18:30:37:0.486:2
chr15	34113010	rs2288613	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,18:32:38:0.474:2	0/1:15,8:32:23:0.348:2	0/1:14,16:32:30:0.533:2	./.	./.	./.	0/1:0,34:33:34:1.00:2	0/1:30,23:33:53:0.434:2
chr15	34113536	rs2288614	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,98:29:100:0.980:2	0/1:1,58:28:59:0.983:2	0/1:2,19:28:21:0.905:2	0/1:0,128:29:128:1.00:2	./.	./.	0/1:0,136:29:136:1.00:2	0/1:1,176:28:177:0.994:2	./.	0/1:57,57:29:114:0.500:2	0/1:81,59:29:140:0.421:2
chr15	34115281	rs12914825	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,16:31:32:0.500:2	0/1:26,16:31:42:0.381:2	./.	./.	0/1:1,45:33:46:0.978:2	./.	0/1:36,41:32:77:0.532:2
chr15	34118411	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.
chr15	34127250	rs202181075	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,24:33:54:0.444:2	0/1:17,17:32:34:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	34130697	rs75286462	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,91:33:191:0.479:2	./.	0/1:98,92:32:193:0.484:2
chr15	34137132	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:31:151:0.026:2	./.	./.
chr15	34137200	rs41279228	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:35:8:0.375:2	0/1:64,35:32:99:0.354:2	./.	./.	./.	0/1:80,50:32:131:0.385:2	0/1:84,57:33:141:0.404:2	0/1:50,43:32:95:0.462:2	0/1:50,63:32:113:0.558:2
chr15	34145311	rs56258848	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,67:33:166:0.404:2	./.	0/1:80,69:31:150:0.463:2
chr15	34147009	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:190,6:33:196:0.031:2	./.	./.	./.	./.	./.	./.
chr15	34151901	rs79305633	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,71:33:165:0.430:2	./.	0/1:92,90:32:182:0.495:2
chr15	34152777	rs2303310	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:37,27:31:64:0.422:2	0/1:19,14:31:33:0.424:2	./.	0/1:26,35:32:62:0.574:2	0/1:0,45:31:45:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,80:32:80:1.00:2	0/1:44,19:31:63:0.302:2	0/1:29,44:33:73:0.603:2	0/1:33,14:30:47:0.298:2	0/1:57,46:32:103:0.447:2
chr15	34156332	rs180882042	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,12:32:17:0.706:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	34159941	rs61729119	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,13:28:31:0.419:2	./.	./.	./.
chr15	34159986	rs2241647	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,17:29:38:0.447:2	0/1:8,3:28:11:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	34355908	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	34356988	rs643827	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,118:32:118:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,129:32:129:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,114:31:114:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,117:32:117:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,150:32:150:1.00:2
chr15	34357259	rs572179	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:31:33:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,29:31:29:1.00:2
chr15	34396913	rs9972552	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.	./.
chr15	34398394	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,3:33:31:0.097:2	./.	./.
chr15	34398408	rs7182085	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,11:32:24:0.458:2	0/1:8,5:32:13:0.385:2	./.	0/1:0,14:32:14:1.00:2	0/1:9,13:32:22:0.591:2	0/1:1,22:31:23:0.957:2	0/1:0,11:32:11:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,24:32:24:1.00:2
chr15	34438972	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:32:199:0.020:2
chr15	34439437	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:33:159:0.025:2	./.
chr15	34439448	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:32:162:0.025:2	./.
chr15	34521940	rs8033087	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,22:32:50:0.449:2	0/1:36,35:32:71:0.493:2
chr15	34528948	rs4577050	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,139:31:140:0.993:2	0/1:0,152:32:152:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,148:32:148:1.00:2	0/1:1,128:31:129:0.992:2	0/1:72,65:31:137:0.474:2	0/1:1,154:32:155:0.994:2	0/1:3,167:31:170:0.982:2	./.	0/1:58,78:31:136:0.574:2	./.
chr15	34532873	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,33:30:73:0.452:2	./.	./.	./.	./.	./.	./.
chr15	34542872	rs17236798	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,61:32:164:0.372:2	./.	./.	0/1:1,168:34:169:0.994:2	./.	0/1:93,74:32:167:0.443:2
chr15	34544468	rs2290940	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,66:32:159:0.415:2	./.	./.	0/1:0,191:33:191:1.00:2	./.	0/1:74,88:32:162:0.543:2
chr15	34546704	rs35583475	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,90:32:190:0.474:2	./.	./.	./.	./.
chr15	34551082	rs7164902	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,73:30:163:0.448:2	0/1:99,76:31:175:0.434:2	./.	0/1:107,90:32:197:0.457:2	0/1:100,77:32:177:0.435:2	0/1:0,166:31:166:1.00:2
chr15	34610768	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:30:81:0.049:2	./.
chr15	34635200	rs2169479	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,4:31:28:0.143:2	0/1:106,84:30:190:0.442:2	./.	./.	0/1:120,74:31:194:0.381:2	./.	0/1:110,86:31:196:0.439:2	0/1:96,94:30:190:0.495:2	0/1:120,73:31:193:0.378:2
chr15	34638198	rs12595504	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,68:29:134:0.507:2	./.	./.	./.	./.	./.
chr15	34640218	rs374230	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:33:16:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,39:32:39:1.00:2
chr15	34640378	rs430083	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:29:70:1.00:2	0/1:0,24:29:24:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,57:29:57:1.00:2	0/1:0,40:29:40:1.00:2	0/1:0,56:29:56:1.00:2	0/1:0,55:28:55:1.00:2	0/1:1,49:29:50:0.980:2	0/1:0,53:29:53:1.00:2	0/1:0,41:29:41:1.00:2	0/1:0,53:28:53:1.00:2
chr15	34640570	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:33:86:0.047:2	./.	./.
chr15	34647812	rs78073896	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,38:31:81:0.469:2	./.	./.
chr15	34648647	rs17236868	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,9:33:33:0.273:2	./.
chr15	34649211	rs2279683	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,77:32:78:0.987:2	./.	./.	./.	./.	./.	./.	./.
chr15	34649247	rs2279684	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,71:30:72:0.986:2	./.	./.	./.	./.	./.	./.	./.
chr15	34656260	rs149805745	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,32:31:62:0.516:2	./.	./.
chr15	34673722	rs76522922	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:132,58:32:190:0.305:2	0/1:136,60:31:196:0.306:2	0/1:25,14:30:39:0.359:2	0/1:103,86:32:189:0.455:2	0/1:76,108:31:184:0.587:2	0/1:81,99:31:180:0.550:2	./.	0/1:90,108:31:198:0.545:2	0/1:0,183:32:183:1.00:2	0/1:150,42:32:192:0.219:2	./.
chr15	34673973	rs200220982	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:6,7:29:13:0.538:2	0/1:5,5:32:10:0.500:2	./.	0/1:5,13:30:18:0.722:2	./.	0/1:6,4:32:10:0.400:2	./.	0/1:18,3:30:21:0.143:2	0/1:6,4:32:10:0.400:2	./.	./.
chr15	34674006	rs201334463	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:7,3:30:10:0.300:2	0/1:4,6:30:10:0.600:2	0/1:1,2:31:3:0.667:2	0/1:4,11:31:15:0.733:2	./.	0/1:8,4:31:12:0.333:2	./.	0/1:12,9:29:21:0.429:2	0/1:4,3:32:7:0.429:2	./.	./.
chr15	34674008	rs142056812	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:28:3:1.00:2
chr15	34674034	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,4:30:15:0.267:2	./.	0/1:8,6:30:14:0.429:2	./.	./.	./.	./.	./.
chr15	34674048	rs146057371	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,10:32:12:0.833:2	0/1:6,4:32:10:0.400:2	0/1:0,2:32:2:1.00:2	0/1:11,3:30:14:0.214:2	./.	0/1:1,11:31:12:0.917:2	0/1:0,14:31:14:1.00:2	0/1:16,7:31:23:0.304:2	./.	0/1:4,5:32:9:0.556:2	0/1:0,2:32:2:1.00:2
chr15	34674183	rs138808613	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,56:31:83:0.675:2	0/1:17,27:32:44:0.614:2	0/1:10,10:29:20:0.500:2	0/1:43,26:31:69:0.377:2	0/1:101,42:30:143:0.294:2	0/1:54,40:30:94:0.426:2	0/1:91,103:31:194:0.531:2	0/1:73,98:31:171:0.573:2	0/1:51,26:32:77:0.338:2	0/1:38,54:32:92:0.587:2	0/1:41,45:31:86:0.523:2
chr15	34674192	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,40:30:192:0.208:2	0/1:147,46:30:193:0.238:2	./.	./.	./.
chr15	34674216	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,16:30:119:0.134:2	./.	0/1:149,23:29:172:0.134:2	./.	./.	./.	./.	./.
chr15	34674220	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,46:33:121:0.380:2	0/1:139,57:32:196:0.291:2	0/1:156,23:31:179:0.128:2	./.	./.	./.	./.	./.
chr15	34674259	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:127,17:32:144:0.118:2	0/1:70,14:31:84:0.167:2	./.	0/1:56,64:32:120:0.533:2	0/1:107,23:31:130:0.177:2	0/1:128,37:31:165:0.224:2	./.	./.	0/1:83,34:32:117:0.291:2	./.	./.
chr15	34674266	.	T	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:90,48:30:138:0.348:2	0/1:49,35:28:84:0.417:2	0/1:11,9:30:20:0.450:2	0/1:0,112:30:112:1.00:2	0/1:3,105:29:108:0.972:2	0/1:58,91:29:149:0.611:2	0/1:63,53:30:116:0.457:2	0/1:77,62:30:141:0.446:2	0/1:40,69:30:109:0.633:2	0/1:82,73:29:155:0.471:2	0/1:63,64:30:127:0.504:2
chr15	34674283	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,30:28:123:0.244:2	0/1:53,16:28:69:0.232:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	34674309	rs201014311	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,21:32:69:0.304:2	0/1:34,17:31:51:0.333:2	0/1:6,4:33:10:0.400:2	0/1:0,58:32:58:1.00:2	0/1:2,38:32:40:0.950:2	0/1:22,47:32:69:0.681:2	0/1:50,31:30:81:0.383:2	0/1:42,40:29:82:0.488:2	0/1:0,56:32:56:1.00:2	0/1:47,40:32:87:0.460:2	0/1:40,29:32:69:0.420:2
chr15	34674325	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,6:30:30:0.200:2	./.	./.	./.	./.	./.	./.
chr15	34674326	rs142931343	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:37,15:31:52:0.288:2	0/1:30,12:30:42:0.286:2	./.	0/1:0,37:29:37:1.00:2	0/1:2,25:28:27:0.926:2	0/1:14,40:30:54:0.741:2	0/1:51,16:29:67:0.239:2	0/1:40,32:29:72:0.444:2	0/1:0,41:31:41:1.00:2	0/1:41,26:30:67:0.388:2	0/1:38,20:29:59:0.345:2
chr15	34674421	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,23:29:31:0.742:2	0/1:9,12:31:21:0.571:2	./.	./.	./.	0/1:34,16:31:50:0.320:2	0/1:22,22:30:44:0.500:2	0/1:20,20:30:40:0.500:2	0/1:19,7:31:26:0.269:2	0/1:9,22:30:31:0.710:2	0/1:18,15:29:33:0.455:2
chr15	34674638	.	G	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,3:33:23:0.130:2	0/1:26,6:32:32:0.188:2	./.	0/1:22,26:31:48:0.542:2	0/1:37,9:32:46:0.196:2	0/1:28,3:33:31:0.097:2	0/1:47,9:32:56:0.161:2	0/1:54,14:33:68:0.206:2	./.	0/1:20,9:30:29:0.310:2	0/1:0,29:31:29:1.00:2
chr15	34674657	rs143586438	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,5:27:20:0.250:2	0/1:14,14:29:28:0.500:2	./.	0/1:20,29:30:49:0.592:2	0/1:37,9:29:46:0.196:2	0/1:19,12:29:31:0.387:2	0/1:41,14:30:55:0.255:2	0/1:42,22:29:64:0.344:2	0/1:24,13:30:37:0.351:2	0/1:11,16:28:27:0.593:2	0/1:0,25:29:25:1.00:2
chr15	34675050	rs139649912	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,7:29:21:0.333:2	0/1:7,3:29:10:0.300:2	./.	0/1:10,12:31:22:0.545:2	0/1:20,4:32:24:0.167:2	0/1:17,12:29:29:0.414:2	0/1:20,16:28:36:0.444:2	0/1:18,18:29:36:0.500:2	0/1:27,8:31:35:0.229:2	0/1:5,16:31:21:0.762:2	0/1:0,16:31:16:1.00:2
chr15	34675152	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,19:10:110:0.173:2	./.	./.	./.
chr15	34677275	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,29:32:96:0.302:2	0/1:44,22:31:66:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	34677517	rs200564418	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:117,62:32:179:0.346:2	0/1:112,75:31:187:0.401:2	./.	0/1:124,55:31:179:0.307:2	0/1:125,33:30:158:0.209:2	0/1:155,23:31:179:0.129:2	0/1:113,67:31:180:0.372:2	0/1:152,23:31:175:0.131:2	0/1:128,40:32:168:0.238:2	./.	./.
chr15	34678911	rs147828722	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:110,82:33:192:0.427:2	0/1:130,64:32:194:0.330:2	0/1:96,47:33:143:0.329:2	0/1:0,189:33:189:1.00:2	0/1:85,110:33:195:0.564:2	0/1:113,83:33:196:0.423:2	0/1:65,130:34:195:0.667:2	0/1:162,28:33:190:0.147:2	0/1:141,52:34:193:0.269:2	0/1:119,73:33:192:0.380:2	0/1:0,187:33:187:1.00:2
chr15	34678933	rs201000307	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:150,36:31:187:0.194:2	0/1:156,31:31:187:0.166:2	./.	0/1:104,87:31:191:0.455:2	0/1:155,39:28:194:0.201:2	0/1:152,37:31:189:0.196:2	./.	./.	0/1:142,49:31:191:0.257:2	./.	./.
chr15	34680037	rs141305972	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,141:32:183:0.770:2	0/1:33,57:33:90:0.633:2	0/1:14,9:32:23:0.391:2	0/1:105,89:32:195:0.459:2	0/1:64,121:31:185:0.654:2	0/1:99,100:32:199:0.503:2	0/1:117,81:32:198:0.409:2	0/1:123,71:32:194:0.366:2	0/1:70,126:33:196:0.643:2	0/1:152,43:32:195:0.221:2	./.
chr15	34680063	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,100:30:194:0.515:2	0/1:130,64:31:194:0.330:2	0/1:152,43:30:195:0.221:2	./.	./.	./.	./.	./.
chr15	34681836	.	C	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:135,33:31:168:0.196:2	0/1:147,34:31:181:0.188:2	./.	0/1:100,78:31:178:0.438:2	0/1:135,44:29:179:0.246:2	0/1:148,30:32:178:0.169:2	./.	./.	0/1:134,44:31:178:0.247:2	./.	./.
chr15	34819940	rs141306407	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:114,12:32:127:0.095:2	0/1:70,4:31:74:0.054:2	./.	./.	0/1:5,7:30:12:0.583:2	0/1:175,16:31:191:0.084:2	./.	0/1:180,13:32:193:0.067:2	0/1:160,5:32:165:0.030:2	0/1:153,11:32:165:0.067:2	0/1:1,25:31:26:0.962:2
chr15	34819943	rs201094284	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,7:29:13:0.538:2	0/1:172,16:30:188:0.085:2	./.	0/1:177,12:31:189:0.063:2	0/1:163,5:32:168:0.030:2	0/1:162,7:31:169:0.041:2	./.
chr15	34820194	rs200975425	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,6:28:19:0.333:2	./.	./.	0/1:9,6:31:15:0.400:2	0/1:1,4:29:5:0.800:2	0/1:7,8:29:15:0.533:2	./.	./.	0/1:2,4:34:6:0.667:2	./.	./.
chr15	34820227	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,4:31:18:0.222:2	./.	./.	0/1:5,4:30:9:0.444:2	0/1:2,3:29:5:0.600:2	0/1:6,9:31:15:0.600:2	./.	0/1:9,4:29:13:0.308:2	0/1:1,2:32:3:0.667:2	0/1:8,4:31:12:0.333:2	./.
chr15	34820255	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,10:31:16:0.625:2	0/1:6,3:29:9:0.333:2	./.	./.	./.	./.	./.	./.
chr15	34820269	rs142225671	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:6,9:31:15:0.600:2	0/1:2,6:32:8:0.750:2	./.	0/1:5,9:30:14:0.643:2	./.	0/1:9,7:31:16:0.438:2	0/1:13,4:32:17:0.235:2	0/1:11,9:31:20:0.450:2	0/1:2,3:30:5:0.600:2	0/1:7,5:31:12:0.417:2	./.
chr15	34820404	rs151232638	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,59:31:88:0.670:2	0/1:26,22:30:48:0.458:2	0/1:6,12:31:18:0.667:2	0/1:54,22:31:76:0.289:2	0/1:69,41:30:110:0.373:2	0/1:47,62:30:109:0.569:2	0/1:87,105:30:192:0.547:2	0/1:75,94:31:169:0.556:2	0/1:44,31:32:75:0.413:2	0/1:40,37:31:77:0.481:2	0/1:28,55:31:83:0.663:2
chr15	34820413	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,40:30:193:0.207:2	0/1:148,47:30:196:0.241:2	./.	./.	./.
chr15	34820437	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,29:30:139:0.209:2	./.	0/1:158,24:30:182:0.132:2	./.	./.	./.	./.	./.
chr15	34820441	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,54:32:143:0.378:2	0/1:123,57:33:180:0.317:2	0/1:157,24:32:181:0.133:2	./.	./.	./.	./.	./.
chr15	34820480	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:124,26:31:150:0.173:2	0/1:53,16:33:69:0.232:2	./.	0/1:66,75:31:141:0.532:2	0/1:105,37:31:142:0.261:2	0/1:126,27:31:153:0.176:2	./.	./.	0/1:95,34:32:129:0.264:2	./.	./.
chr15	34820487	rs140393253	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:93,49:28:143:0.345:2	0/1:29,37:28:66:0.561:2	0/1:10,5:31:15:0.333:2	0/1:4,129:30:133:0.970:2	0/1:1,128:29:129:0.992:2	0/1:56,83:29:139:0.597:2	0/1:58,55:30:113:0.487:2	0/1:72,65:30:137:0.474:2	0/1:62,60:29:122:0.492:2	0/1:54,61:29:115:0.530:2	0/1:64,55:28:119:0.462:2
chr15	34820504	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,40:28:127:0.315:2	0/1:45,9:26:54:0.167:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	34820530	rs145017757	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,32:32:95:0.337:2	0/1:18,21:32:39:0.538:2	0/1:5,4:31:9:0.444:2	0/1:4,83:33:87:0.954:2	0/1:1,57:31:58:0.983:2	0/1:20,46:32:66:0.697:2	0/1:52,39:31:91:0.429:2	0/1:49,42:31:91:0.462:2	0/1:2,52:33:54:0.963:2	0/1:37,33:31:70:0.471:2	0/1:29,27:31:57:0.482:2
chr15	34820546	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,13:31:39:0.333:2	./.	./.	./.	./.	./.	./.
chr15	34820547	.	C	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:55,25:29:80:0.313:2	0/1:16,14:30:30:0.467:2	./.	0/1:5,50:30:55:0.909:2	0/1:1,35:30:36:0.972:2	0/1:17,42:30:59:0.712:2	0/1:44,31:28:75:0.413:2	0/1:42,35:29:77:0.455:2	0/1:0,43:31:43:1.00:2	0/1:30,25:31:55:0.455:2	0/1:27,22:29:49:0.449:2
chr15	34820642	.	G	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:21,24:30:45:0.533:2	0/1:13,10:29:23:0.435:2	0/1:5,3:30:8:0.375:2	./.	./.	0/1:41,10:30:51:0.196:2	0/1:32,24:30:56:0.429:2	0/1:36,28:30:64:0.438:2	0/1:25,4:31:29:0.138:2	0/1:15,15:29:30:0.500:2	0/1:24,16:30:41:0.400:2
chr15	34820859	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,7:31:33:0.212:2	./.	./.	0/1:16,16:31:32:0.500:2	0/1:29,10:32:39:0.256:2	0/1:32,10:31:42:0.238:2	./.	0/1:48,12:32:60:0.200:2	./.	0/1:7,13:31:20:0.650:2	0/1:0,34:32:34:1.00:2
chr15	34820878	rs146783347	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,11:27:28:0.393:2	0/1:5,6:29:11:0.545:2	./.	0/1:14,16:30:30:0.533:2	0/1:32,8:28:40:0.200:2	0/1:27,13:29:40:0.325:2	0/1:34,15:28:49:0.306:2	0/1:34,31:30:65:0.477:2	0/1:16,6:30:22:0.273:2	0/1:5,18:28:23:0.783:2	0/1:0,34:28:34:1.00:2
chr15	34821271	rs138276220	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,7:27:19:0.368:2	0/1:11,6:32:17:0.353:2	0/1:1,3:26:4:0.750:2	0/1:17,11:30:28:0.393:2	./.	0/1:12,15:30:27:0.556:2	0/1:15,22:29:37:0.595:2	0/1:19,16:30:35:0.457:2	0/1:15,6:29:21:0.286:2	0/1:4,11:32:15:0.733:2	0/1:0,19:28:19:1.00:2
chr15	34821373	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,20:12:100:0.200:2	./.	./.	0/1:101,17:11:119:0.144:2	./.	./.	./.	./.
chr15	34823496	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,24:32:94:0.255:2	0/1:52,9:29:61:0.148:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	34823738	rs200544945	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:110,64:32:174:0.368:2	0/1:116,75:31:191:0.393:2	0/1:45,9:31:54:0.167:2	0/1:99,69:31:168:0.411:2	0/1:107,32:30:139:0.230:2	0/1:155,16:31:171:0.094:2	0/1:110,62:31:172:0.360:2	0/1:148,24:30:172:0.140:2	0/1:155,33:33:188:0.176:2	./.	./.
chr15	34825132	rs199645647	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:96,98:33:194:0.505:2	0/1:98,91:32:189:0.481:2	0/1:73,84:33:157:0.535:2	0/1:1,187:33:188:0.995:2	0/1:72,123:32:195:0.631:2	0/1:103,93:33:196:0.474:2	0/1:55,135:34:190:0.711:2	0/1:149,49:33:198:0.247:2	0/1:135,60:34:195:0.308:2	0/1:113,82:32:195:0.421:2	0/1:1,186:33:187:0.995:2
chr15	34825154	rs200216709	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:143,39:31:183:0.214:2	0/1:160,33:31:193:0.171:2	./.	0/1:103,88:32:191:0.461:2	0/1:131,66:31:199:0.335:2	0/1:150,40:30:191:0.211:2	./.	./.	0/1:124,63:31:187:0.337:2	./.	./.
chr15	34826258	rs150525716	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,128:32:168:0.766:2	0/1:29,80:32:109:0.734:2	0/1:5,26:31:31:0.839:2	0/1:96,103:32:199:0.518:2	0/1:75,103:32:178:0.579:2	0/1:98,98:32:196:0.500:2	0/1:117,82:32:199:0.412:2	0/1:111,88:32:199:0.442:2	0/1:76,121:33:197:0.614:2	0/1:149,45:33:194:0.232:2	./.
chr15	34826284	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,93:31:196:0.474:2	0/1:115,81:30:196:0.413:2	0/1:148,48:31:196:0.245:2	./.	./.	./.	./.	./.
chr15	34828057	.	C	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:130,30:32:160:0.188:2	0/1:149,42:31:191:0.220:2	./.	0/1:101,73:32:174:0.420:2	0/1:138,38:30:177:0.216:2	0/1:149,23:32:172:0.134:2	./.	./.	0/1:128,38:33:167:0.229:2	./.	./.
chr15	35044757	rs34964522	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,50:30:114:0.439:2	./.	./.	./.
chr15	35045057	rs3743123	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:67,80:31:147:0.544:2	0/1:52,36:32:88:0.409:2	./.	0/1:82,110:32:193:0.573:2	./.	./.	./.	0/1:88,84:32:172:0.488:2	0/1:112,83:32:195:0.426:2	0/1:67,53:31:120:0.442:2	0/1:85,97:32:182:0.533:2
chr15	35045312	rs651724	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,37:32:98:0.378:2	0/1:28,27:32:55:0.491:2	0/1:6,6:33:12:0.500:2	0/1:0,86:32:86:1.00:2	./.	0/1:53,42:31:95:0.442:2	./.	0/1:43,68:32:111:0.613:2	0/1:58,46:32:104:0.442:2	0/1:46,34:32:80:0.425:2	0/1:0,96:32:96:1.00:2
chr15	35083496	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:34:94:0.043:2	./.
chr15	35149008	rs8035240	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:33:96:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,101:33:101:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,141:32:141:1.00:2	0/1:0,140:32:140:1.00:2	0/1:0,99:33:99:1.00:2	0/1:0,97:33:97:1.00:2	0/1:0,122:33:122:1.00:2
chr15	35166928	rs140189633	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,66:31:120:0.550:2	./.	./.	./.
chr15	35174808	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:32:129:0.031:2	./.
chr15	35198879	rs80093103	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,25:32:57:0.439:2	0/1:27,12:33:39:0.308:2	./.	./.	./.	0/1:33,33:32:66:0.500:2	./.	./.	./.	./.	0/1:41,44:33:85:0.518:2
chr15	35273620	rs4923849	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:17,23:31:40:0.575:2	0/1:18,17:32:35:0.486:2	./.	0/1:33,23:31:56:0.411:2	./.	0/1:40,37:31:77:0.481:2	./.	./.	./.	./.	0/1:34,29:31:63:0.460:2
chr15	35275515	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,5:32:107:0.047:2	./.	./.	./.	./.	./.	./.
chr15	35275628	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:32:161:0.025:2	./.	./.	./.	./.	./.
chr15	35275661	rs74008016	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,7:31:17:0.412:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	36937405	rs11073191	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,21:32:21:1.00:2	0/1:2,3:32:5:0.600:2	0/1:1,61:31:62:0.984:2	0/1:0,36:31:36:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,33:32:33:1.00:2	0/1:43,15:31:58:0.259:2	0/1:0,58:33:58:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,68:31:68:1.00:2
chr15	36946303	rs3784678	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,148:29:149:1.00:2	0/1:0,151:29:151:1.00:2	./.	./.	0/1:109,75:30:184:0.408:2	0/1:109,87:31:196:0.444:2	0/1:54,62:30:116:0.534:2	0/1:0,149:29:149:1.00:2
chr15	36983962	rs7183415	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,28:32:73:0.389:2	./.	./.	./.
chr15	37187020	rs200916796	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.	./.	./.	./.	./.
chr15	37388547	rs138513608	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,9:12:32:0.281:2	0/1:56,13:22:69:0.188:2	0/1:38,10:24:48:0.208:2	0/1:46,10:21:56:0.179:2	0/1:57,15:21:72:0.208:2	./.	0/1:14,5:18:19:0.263:2	0/1:28,10:17:39:0.263:2
chr15	37390268	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,4:28:35:0.114:2	./.	./.	./.	./.	./.	./.	./.
chr15	38228548	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:33:47:0.085:2	./.
chr15	38230394	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:36:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	38233381	rs74738519	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,15:30:21:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	38233383	rs79150042	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,15:29:21:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	38233869	rs2937991	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,14:32:14:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,4:33:4:1.00:2	0/1:1,25:32:26:0.962:2	0/1:0,25:33:25:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,26:33:26:1.00:2
chr15	38235521	rs12443282	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,8:32:19:0.421:2	./.	./.	./.	./.	./.	./.	./.
chr15	38235552	rs75198817	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	38239858	rs78542351	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	38614525	rs7182445	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:32:72:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,88:31:88:1.00:2	0/1:1,64:30:65:0.985:2	0/1:0,84:30:84:1.00:2	0/1:1,52:32:53:0.981:2	0/1:0,77:31:77:1.00:2	0/1:0,80:32:80:1.00:2	0/1:41,25:32:66:0.379:2	0/1:0,73:32:73:1.00:2
chr15	38643574	rs3751526	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,59:32:61:0.967:2	0/1:0,35:32:36:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,55:33:55:1.00:2	0/1:22,18:32:40:0.450:2	0/1:0,86:33:86:1.00:2
chr15	38792365	rs62003591	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,18:33:38:0.474:2
chr15	38794566	rs12324402	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:19,10:30:29:0.345:2	0/1:12,21:30:33:0.636:2	0/1:3,5:30:8:0.625:2	./.	./.	0/1:23,17:29:40:0.425:2	0/1:16,6:33:22:0.273:2	./.	./.	./.	./.
chr15	38800158	rs55704435	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,60:31:110:0.545:2
chr15	38810585	rs56366451	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,37:33:74:0.500:2
chr15	38988815	rs7165988	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,25:31:42:0.595:2	./.	./.	0/1:15,19:32:34:0.559:2	0/1:0,51:32:51:1.00:2	./.	0/1:20,20:31:40:0.500:2	0/1:28,32:31:60:0.533:2
chr15	38990620	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,5:29:64:0.078:2	./.	./.	./.
chr15	39544512	rs11853050	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,47:31:86:0.547:2	./.	./.	./.	./.
chr15	39545032	rs156783	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:33:52:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,47:33:47:1.00:2	0/1:34,26:32:60:0.433:2	0/1:29,27:32:56:0.482:2	0/1:0,67:33:67:1.00:2	0/1:0,103:34:103:1.00:2	0/1:0,44:33:44:1.00:2	0/1:39,55:32:94:0.585:2
chr15	39545148	rs13329154	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,16:32:36:0.444:2	0/1:13,12:31:25:0.480:2	./.	0/1:16,16:30:32:0.500:2	0/1:18,6:30:24:0.250:2	0/1:18,12:31:30:0.400:2	./.	./.	./.	./.	./.
chr15	39545268	rs156784	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,108:31:109:0.991:2	0/1:0,43:31:43:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,104:30:104:1.00:2	0/1:0,64:30:64:1.00:2	0/1:61,54:30:115:0.470:2	0/1:47,24:31:72:0.338:2	0/1:0,84:30:84:1.00:2	0/1:0,97:31:97:1.00:2	0/1:0,66:31:66:1.00:2	0/1:109,67:30:176:0.381:2
chr15	39545282	rs12904023	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,20:32:64:0.313:2	./.	./.	./.	./.
chr15	39545457	rs35201540	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,9:29:28:0.321:2	./.	./.	./.	./.
chr15	39545481	rs17691608	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,7:33:27:0.259:2	./.	./.	./.	./.
chr15	39546114	rs1847663	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,32:33:75:0.427:2	0/1:20,18:32:38:0.474:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,44:33:86:0.512:2
chr15	39546259	rs72722918	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,12:33:28:0.429:2	./.
chr15	39546528	rs72722919	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,7:33:19:0.368:2	./.
chr15	39546830	rs12915271	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,9:31:19:0.474:2	./.	./.	./.	./.
chr15	39879717	rs2229364	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:14,12:32:26:0.462:2	0/1:9,8:32:17:0.471:2	./.	0/1:34,17:31:51:0.333:2	./.	0/1:27,28:31:55:0.509:2	./.	./.	./.	./.	./.
chr15	39880277	rs35275624	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,48:32:95:0.505:2	0/1:22,32:31:54:0.593:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,51:32:128:0.398:2
chr15	39880358	rs2228261	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:21,19:32:40:0.475:2	0/1:8,16:31:24:0.667:2	./.	0/1:48,56:32:104:0.538:2	./.	0/1:37,42:31:80:0.532:2	./.	./.	./.	./.	./.
chr15	39880818	rs41338344	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,36:31:62:0.581:2	./.	./.
chr15	39880822	rs2292305	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:26,26:30:52:0.500:2	0/1:20,15:29:35:0.429:2	./.	0/1:43,34:30:77:0.442:2	./.	0/1:40,29:29:69:0.420:2	./.	./.	./.	./.	./.
chr15	39882178	rs2228262	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,31:32:67:0.463:2	0/1:18,30:30:48:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,34:33:82:0.415:2
chr15	39882745	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:140,5:29:145:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr15	39885301	rs2228263	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,22:32:41:0.537:2	0/1:23,11:29:34:0.324:2	./.	./.	./.	./.	./.	./.	0/1:34,32:32:66:0.485:2	./.	0/1:36,26:32:62:0.419:2
chr15	39910052	rs16969386	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:50,35:32:85:0.412:2	0/1:34,20:33:56:0.370:2	./.	0/1:40,52:33:92:0.565:2	./.	0/1:61,40:32:101:0.396:2	./.	./.	./.	./.	./.
chr15	39910404	rs12908846	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:55,33:32:88:0.375:2	0/1:32,18:32:50:0.360:2	./.	0/1:64,41:31:106:0.390:2	./.	0/1:43,44:31:89:0.506:2	./.	./.	./.	./.	./.
chr15	39910431	rs10152640	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,55:31:56:0.982:2	0/1:0,42:30:42:1.00:2	./.	0/1:50,31:30:81:0.383:2	./.	0/1:35,28:30:63:0.444:2	./.	./.	0/1:27,55:31:82:0.671:2	./.	0/1:70,32:31:102:0.314:2
chr15	40005772	rs937961	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,42:32:97:0.438:2	0/1:38,28:32:66:0.424:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,58:31:116:0.500:2
chr15	40018837	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,3:33:49:0.061:2	./.
chr15	40034079	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:34:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	40068632	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,4:30:70:0.057:2	./.	./.	./.	./.	./.	./.	./.
chr15	40226495	rs566792	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,14:33:37:0.378:2	./.	0/1:0,7:32:7:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,35:31:35:1.00:2	0/1:8,10:34:18:0.556:2	0/1:0,8:33:8:1.00:2	0/1:14,24:32:38:0.632:2	0/1:0,32:32:32:1.00:2	0/1:1,27:32:28:0.964:2	0/1:0,18:32:18:1.00:2
chr15	40257904	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:33:85:0.047:2	./.
chr15	40259848	rs2291627	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,13:32:22:0.591:2	0/1:56,44:33:100:0.440:2	./.	./.	./.	./.	0/1:49,59:33:108:0.546:2	./.	./.
chr15	40265799	rs2307105	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:32:89:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,152:33:152:1.00:2	0/1:3,110:32:113:0.973:2	0/1:0,94:32:94:1.00:2	0/1:0,115:32:115:1.00:2	0/1:1,140:32:141:0.993:2	0/1:0,143:34:143:1.00:2	0/1:59,54:33:113:0.478:2	0/1:1,147:33:148:0.993:2
chr15	40293374	rs374620776	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:34:149:0.027:2	./.	./.	./.
chr15	40308859	rs35602605	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,30:32:66:0.455:2	./.	./.	./.	./.	./.	./.
chr15	40313141	rs3207297	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:2,108:32:110:0.982:2	0/1:2,84:31:86:0.977:2	./.	0/1:120,68:31:188:0.362:2	./.	0/1:97,98:30:195:0.503:2	0/1:116,75:32:191:0.393:2	0/1:104,89:32:193:0.461:2	./.	./.	0/1:1,177:31:178:0.994:2
chr15	40328575	rs7535	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,149:32:151:0.987:2	0/1:0,130:33:131:1.00:2	0/1:31,27:32:58:0.466:2	0/1:0,151:33:152:1.00:2	0/1:1,118:32:119:0.992:2	0/1:0,158:32:158:1.00:2	0/1:4,141:33:145:0.972:2	0/1:0,143:32:143:1.00:2	0/1:94,55:33:149:0.369:2	0/1:0,143:32:143:1.00:2	0/1:84,55:32:139:0.396:2
chr15	40328605	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:137,4:32:141:0.028:2	0/1:119,4:30:123:0.033:2	./.	./.	./.	./.	./.	./.
chr15	40328665	rs8208	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,109:31:111:0.982:2	0/1:0,69:31:69:1.00:2	0/1:11,16:29:27:0.593:2	0/1:89,82:30:171:0.480:2	0/1:6,117:29:123:0.951:2	0/1:4,130:30:134:0.970:2	0/1:77,64:30:141:0.454:2	0/1:1,153:30:154:0.994:2	0/1:90,72:31:163:0.444:2	0/1:77,82:30:159:0.516:2	0/1:94,79:31:173:0.457:2
chr15	40330518	rs1059395	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,25:28:58:0.431:2	./.	./.	0/1:41,30:29:71:0.423:2	./.
chr15	40330564	rs7321	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:32:74:1.00:2	0/1:0,46:32:46:1.00:2	0/1:6,5:32:11:0.455:2	0/1:0,56:32:56:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,97:32:97:1.00:2	0/1:45,53:32:98:0.541:2	0/1:0,83:32:83:1.00:2	0/1:59,37:31:96:0.385:2
chr15	40398104	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:31:103:0.039:2	./.	./.	./.	./.
chr15	40462780	rs1801389	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,54:33:56:0.964:2	./.	0/1:45,43:33:88:0.489:2
chr15	40462846	rs28989189	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,20:32:36:0.556:2	./.	./.	./.	./.	./.	./.
chr15	40477831	rs1801376	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,29:32:52:0.558:2	0/1:23,13:32:36:0.361:2	0/1:10,6:31:16:0.375:2	0/1:50,38:32:88:0.432:2	0/1:54,36:31:90:0.400:2	0/1:0,67:32:67:1.00:2	0/1:37,28:32:65:0.431:2	./.	0/1:0,109:32:109:1.00:2	./.	0/1:45,44:31:89:0.494:2
chr15	40488851	rs1047130	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,16:32:36:0.444:2	0/1:23,19:32:42:0.452:2	./.	./.	./.	0/1:0,43:31:43:1.00:2	./.	./.	./.	./.	./.
chr15	40493186	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:32:165:0.024:2	./.	./.	./.
chr15	40544493	rs55799438	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	./.	0/1:3,6:31:9:0.667:2	./.	./.
chr15	40544520	rs55974545	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,5:28:7:0.714:2	./.	./.
chr15	40544617	rs55863440	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:32:9:0.333:2	0/1:6,3:27:9:0.333:2	0/1:6,3:31:9:0.333:2	./.	0/1:7,3:28:10:0.300:2	./.	./.	./.
chr15	40558064	rs2412504	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,10:30:13:0.769:2	0/1:1,106:32:107:0.991:2	./.	./.	./.	./.	./.	./.	./.
chr15	40558482	rs3743135	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,17:29:18:0.944:2	./.	./.	./.	./.	./.	./.	./.
chr15	40581067	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,4:30:53:0.075:2	./.	./.	./.	./.	./.	./.	./.
chr15	40583876	rs9972418	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,12:31:12:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,11:27:11:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,7:32:7:1.00:2
chr15	40589002	rs2229691	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:30:7:0.571:2	0/1:17,21:28:38:0.553:2	./.	./.	./.	./.	./.	./.	./.
chr15	40590134	rs2229690	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,28:31:71:0.394:2	0/1:15,23:30:38:0.605:2	0/1:0,9:31:9:1.00:2	0/1:0,93:30:93:1.00:2	./.	./.	0/1:47,53:30:101:0.530:2	0/1:63,54:29:118:0.462:2	./.	0/1:0,78:31:79:1.00:2	./.
chr15	40591092	rs200412140	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,18:32:39:0.462:2	./.	./.
chr15	40595474	rs2305646	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,33:32:55:0.600:2	./.	./.	./.	./.	./.
chr15	40595565	rs2305645	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,16:28:29:0.552:2	0/1:6,20:30:26:0.769:2	./.	0/1:22,21:28:43:0.488:2	0/1:23,23:28:46:0.500:2	0/1:24,20:28:44:0.455:2	./.	0/1:37,21:28:58:0.362:2	0/1:0,48:29:49:1.00:2	./.	0/1:0,62:28:62:1.00:2
chr15	40627845	rs55641696	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,15:32:36:0.417:2	0/1:14,17:30:31:0.548:2	./.	0/1:16,15:32:31:0.484:2	./.	./.	./.	./.
chr15	40630073	rs78494549	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,9:32:13:0.692:2	./.	./.	./.
chr15	40630770	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,46:32:116:0.397:2	./.	./.
chr15	40633138	rs4924455	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:20,15:33:35:0.429:2	0/1:11,11:32:22:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:13,7:33:20:0.350:2	0/1:32,18:32:50:0.360:2
chr15	40648417	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:29:10:0.600:2	./.	./.	./.	./.	./.	./.	./.
chr15	40655845	rs1898883	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,7:30:17:0.412:2	0/1:5,3:33:8:0.375:2	./.	0/1:0,14:31:14:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,7:32:7:1.00:2	0/1:9,7:32:16:0.438:2	0/1:9,8:29:17:0.471:2	./.	0/1:6,15:31:21:0.714:2
chr15	40655873	rs1898882	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,11:31:21:0.524:2	0/1:9,5:32:14:0.357:2	0/1:0,2:32:2:1.00:2	0/1:0,25:32:25:1.00:2	0/1:10,20:31:30:0.667:2	0/1:0,33:31:33:1.00:2	0/1:7,10:33:17:0.588:2	0/1:17,15:31:32:0.469:2	./.	./.	0/1:7,21:33:28:0.750:2
chr15	40659437	rs140120816	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,43:30:92:0.467:2	./.	./.	./.	./.	./.	./.	./.
chr15	40659476	rs35043215	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,28:32:49:0.571:2	0/1:18,14:32:32:0.438:2	0/1:7,3:32:10:0.300:2	0/1:35,44:32:79:0.557:2	./.	0/1:34,31:32:65:0.477:2	./.	./.	./.	0/1:36,23:33:59:0.390:2	./.
chr15	40659871	rs138998520	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,57:29:117:0.487:2	./.
chr15	40660043	rs76331864	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,11:30:21:0.524:2	./.	./.	./.	./.	./.
chr15	40660515	rs35565646	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.
chr15	40660566	rs72733420	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,13:32:20:0.650:2	./.	0/1:2,5:32:7:0.714:2	./.	0/1:10,7:32:17:0.412:2	./.	./.
chr15	40662488	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	40675155	rs7164132	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,19:31:39:0.487:2	./.	./.	./.	0/1:24,10:33:34:0.294:2	./.	./.	./.
chr15	40675443	rs7169404	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,25:32:55:0.455:2	./.	./.	./.	0/1:33,17:30:50:0.340:2	./.	./.	./.
chr15	40675493	rs7169262	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,16:31:43:0.372:2	./.	./.	./.	0/1:23,11:31:35:0.324:2	./.	./.	./.
chr15	40683702	rs11541642	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,41:29:94:0.436:2	./.	./.	./.
chr15	40684232	rs72733427	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	0/1:30,17:32:47:0.362:2	./.	./.	./.	./.
chr15	40685406	rs8036457	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,13:29:22:0.591:2	./.	./.	./.	0/1:91,62:31:153:0.405:2	./.	./.	./.	./.
chr15	40705225	rs2229312	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:30:10:0.300:2	./.	./.	./.	0/1:36,20:31:56:0.357:2	./.	./.	./.	./.
chr15	40751555	rs3803357	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,18:31:35:0.514:2	0/1:12,14:31:26:0.538:2	0/1:0,8:30:8:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,55:30:55:1.00:2	0/1:29,32:30:61:0.525:2	0/1:1,49:30:50:0.980:2	./.	0/1:0,53:31:53:1.00:2	0/1:17,13:31:30:0.433:2	0/1:12,18:30:30:0.600:2
chr15	40764549	rs582736	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,8:31:32:0.250:2	./.	./.	./.	0/1:98,81:32:179:0.453:2	./.	./.	./.	0/1:89,92:32:181:0.508:2
chr15	40765360	rs667623	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	0/1:8,3:33:11:0.273:2	./.	./.	./.	0/1:6,5:33:11:0.455:2
chr15	40855210	rs10152546	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,21:31:35:0.600:2	0/1:4,18:31:22:0.818:2	./.	./.	./.	0/1:9,14:29:23:0.609:2	./.	0/1:11,18:30:29:0.621:2	./.	0/1:22,7:31:29:0.241:2	0/1:20,12:32:32:0.375:2
chr15	40856989	rs3803354	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,28:31:28:1.00:2	0/1:0,16:31:16:1.00:2	./.	0/1:1,30:30:31:0.968:2	0/1:0,33:32:33:1.00:2	0/1:0,25:29:25:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,29:31:29:1.00:2	0/1:9,12:30:21:0.571:2
chr15	40862064	rs1058734	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,24:31:36:0.667:2	0/1:10,4:31:14:0.286:2	./.	./.	./.	0/1:22,16:33:38:0.421:2	./.	0/1:28,17:30:45:0.378:2	./.	0/1:14,13:33:27:0.481:2	0/1:23,23:31:46:0.500:2
chr15	40864042	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,26:30:60:0.433:2	./.	./.	./.	./.	./.	./.	./.
chr15	40898643	rs7177192	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:32:54:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,46:32:46:1.00:2	./.	0/1:0,47:32:47:1.00:2	0/1:13,7:33:20:0.350:2	0/1:1,40:32:41:0.976:2	0/1:0,56:33:56:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,73:33:73:1.00:2
chr15	40903684	rs12911738	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,31:32:32:0.969:2	0/1:0,18:32:18:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,37:32:37:1.00:2	0/1:11,12:32:23:0.522:2	0/1:0,34:32:34:1.00:2	0/1:12,8:33:20:0.400:2	0/1:0,31:32:31:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,57:33:57:1.00:2
chr15	40913809	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:33:178:0.022:2
chr15	40913840	rs2412541	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,101:32:101:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,106:31:106:1.00:2	0/1:86,43:32:129:0.333:2	0/1:0,101:31:102:1.00:2	0/1:82,46:32:128:0.359:2	0/1:3,134:32:137:0.978:2	0/1:1,136:32:137:0.993:2	0/1:2,98:32:100:0.980:2	0/1:0,150:32:150:1.00:2
chr15	40914177	rs11858113	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,27:30:46:0.587:2	0/1:21,15:29:36:0.417:2	0/1:0,6:28:6:1.00:2	0/1:1,66:29:67:0.985:2	0/1:24,13:28:37:0.351:2	0/1:20,32:28:52:0.615:2	0/1:32,36:29:68:0.529:2	0/1:49,15:26:64:0.234:2	0/1:0,68:29:68:1.00:2	0/1:21,14:30:35:0.400:2	0/1:49,45:29:94:0.479:2
chr15	40914465	rs76545867	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,9:14:55:0.164:2
chr15	40914772	rs11855334	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,44:33:116:0.379:2	0/1:35,22:32:57:0.386:2	0/1:0,13:31:13:1.00:2	0/1:0,125:32:125:1.00:2	0/1:61,74:31:135:0.548:2	0/1:81,55:32:136:0.404:2	0/1:72,53:32:125:0.424:2	0/1:71,69:32:140:0.493:2	0/1:0,122:33:122:1.00:2	0/1:68,54:32:122:0.443:2	0/1:86,59:32:145:0.407:2
chr15	40915045	rs8041534	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,43:30:96:0.448:2	0/1:28,17:29:45:0.378:2	0/1:0,15:30:15:1.00:2	0/1:0,80:30:80:1.00:2	0/1:25,20:28:45:0.444:2	0/1:39,53:29:93:0.576:2	0/1:21,21:30:42:0.500:2	0/1:35,45:29:80:0.563:2	0/1:2,136:30:138:0.986:2	0/1:49,39:30:88:0.443:2	0/1:77,56:30:133:0.421:2
chr15	40915190	rs8040502	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:33:80:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,116:32:116:1.00:2	0/1:59,38:32:97:0.392:2	./.	0/1:70,43:32:113:0.381:2	0/1:1,142:32:143:0.993:2	0/1:0,137:33:137:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,127:32:127:1.00:2
chr15	40915894	rs11070285	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,44:30:84:0.530:2	0/1:15,20:30:35:0.571:2	0/1:0,8:29:8:1.00:2	0/1:0,65:30:65:1.00:2	0/1:23,25:29:48:0.521:2	0/1:31,35:28:66:0.530:2	0/1:19,26:28:45:0.578:2	0/1:26,22:29:48:0.458:2	0/1:0,89:30:89:1.00:2	0/1:20,21:27:42:0.512:2	0/1:37,43:30:80:0.538:2
chr15	40916237	rs17747633	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,27:33:55:0.491:2	0/1:5,24:33:29:0.828:2	./.	./.	./.	0/1:25,14:31:39:0.359:2	./.	0/1:27,40:33:67:0.597:2	./.	0/1:17,26:33:43:0.605:2	0/1:28,34:33:62:0.548:2
chr15	40916801	rs16970911	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,25:32:44:0.568:2	./.	./.	./.	./.
chr15	40920831	rs180678267	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,44:32:84:0.524:2	./.	./.	./.	./.	./.	./.	./.
chr15	40933145	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,3:33:41:0.073:2
chr15	40942730	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,19:16:87:0.218:2
chr15	40947094	rs370035611	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,11:30:15:0.733:2
chr15	41029923	rs201314462	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,10:13:44:0.227:2	./.	./.	./.	0/1:38,16:12:54:0.296:2	./.	./.	./.
chr15	41030224	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:32:114:0.035:2
chr15	41046883	rs11558807	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,37:30:76:0.487:2	./.	./.	./.
chr15	41056440	rs2016546	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,25:31:48:0.521:2	./.	./.	0/1:17,14:31:31:0.452:2	./.	./.	./.	./.
chr15	41063244	rs1866170	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:32:3:1.00:2	0/1:34,21:33:55:0.382:2	0/1:25,9:32:34:0.265:2	0/1:0,35:31:35:1.00:2	0/1:24,16:33:40:0.400:2	0/1:26,16:33:42:0.381:2	0/1:0,47:33:47:1.00:2	0/1:30,26:33:56:0.464:2	0/1:34,34:32:68:0.500:2
chr15	41063588	rs117519388	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:32:10:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:35,39:32:74:0.527:2
chr15	41063829	rs8025558	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,18:31:31:0.581:2	./.	./.	0/1:11,10:31:21:0.476:2	./.	./.	./.	./.
chr15	41099819	rs76010310	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,15:33:24:0.625:2
chr15	41102150	rs199947417	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,55:32:101:0.545:2	0/1:20,27:31:47:0.574:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	41105926	rs690347	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,24:30:47:0.511:2	0/1:10,7:32:17:0.412:2	0/1:5,4:33:9:0.444:2	0/1:0,73:33:73:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,65:33:65:1.00:2	0/1:47,51:32:98:0.520:2	0/1:59,47:33:106:0.443:2	0/1:0,67:33:67:1.00:2	0/1:30,22:32:52:0.423:2	0/1:0,60:31:60:1.00:2
chr15	41108440	rs200032168	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:28:55:0.073:2	./.	./.	./.
chr15	41145919	rs17658212	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,18:32:47:0.383:2
chr15	41146880	rs8028552	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:21,9:29:30:0.300:2	0/1:9,10:29:19:0.526:2	0/1:2,5:28:7:0.714:2	./.	./.	./.	./.	./.	./.	0/1:25,18:29:43:0.419:2	0/1:17,21:26:38:0.553:2
chr15	41148092	rs139286505	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,29:29:56:0.518:2	./.	./.	./.	./.	./.	./.	./.
chr15	41148163	rs690136	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,37:31:81:0.457:2	./.	./.	0/1:59,50:31:110:0.459:2	./.	./.	./.	./.
chr15	41148177	rs147386305	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,38:30:88:0.432:2	./.	./.	./.	./.	./.	./.	./.
chr15	41148199	rs659232	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,28:32:69:0.406:2	0/1:20,14:31:34:0.412:2	0/1:7,6:32:13:0.462:2	0/1:1,84:31:85:0.988:2	0/1:0,109:32:109:1.00:2	0/1:1,94:31:95:0.989:2	0/1:0,102:31:102:1.00:2	0/1:0,103:32:103:1.00:2	0/1:0,85:32:85:1.00:2	0/1:20,28:32:48:0.583:2	0/1:31,37:32:68:0.544:2
chr15	41148250	rs690365	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,21:31:54:0.389:2	./.	./.	0/1:43,45:32:89:0.511:2	./.	./.	./.	./.
chr15	41149161	rs690458	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,16:32:34:0.471:2	0/1:17,12:31:29:0.414:2	0/1:2,3:30:5:0.600:2	0/1:0,57:32:57:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,38:33:38:1.00:2	0/1:21,10:31:31:0.323:2	0/1:19,25:32:44:0.568:2
chr15	41165352	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:34:100:0.040:2	./.	./.
chr15	41186990	rs16971177	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,31:30:71:0.437:2	./.	./.	./.	./.	./.	./.	./.
chr15	41187028	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,3:32:36:0.083:2	./.
chr15	41191945	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:32:86:0.047:2	./.	./.	./.
chr15	41192168	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.	./.	./.	./.
chr15	41192558	rs595559	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,28:32:55:0.509:2	./.	./.	./.	./.	./.	./.	./.
chr15	41192816	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,45:31:105:0.429:2	./.	./.	./.	./.
chr15	41195446	rs4924512	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,15:31:39:0.385:2
chr15	41227314	rs35748882	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,9:31:19:0.474:2	./.	./.	./.	./.	./.	./.
chr15	41245676	rs11557249	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,11:30:31:0.355:2	0/1:15,15:28:30:0.500:2	./.	./.	0/1:0,22:31:23:1.00:2	0/1:12,9:25:21:0.429:2	./.
chr15	41247629	rs147487857	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,69:33:136:0.507:2	./.	./.
chr15	41247670	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,5:26:168:0.030:2	./.	./.	./.	./.	./.
chr15	41247859	rs112036939	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,8:32:25:0.320:2	./.
chr15	41277551	rs61757083	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,74:33:153:0.484:2	./.	./.
chr15	41339697	rs34153025	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:8,10:32:18:0.556:2	0/1:7,5:33:12:0.417:2	./.	./.	./.	./.	./.	./.	./.	0/1:8,5:32:13:0.385:2	./.
chr15	41476209	rs522063	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:1,56:32:57:0.982:2	0/1:0,16:32:16:1.00:2	0/1:0,117:32:117:1.00:2	0/1:51,43:32:94:0.457:2	0/1:60,71:31:132:0.542:2	0/1:0,115:32:116:1.00:2	0/1:0,91:32:91:1.00:2	0/1:87,67:32:154:0.435:2	0/1:0,79:32:79:1.00:2	0/1:0,121:32:122:1.00:2
chr15	41476465	rs690733	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,44:33:108:0.407:2	0/1:39,23:32:62:0.371:2	0/1:7,7:31:14:0.500:2	0/1:57,62:31:119:0.521:2	0/1:0,95:30:95:1.00:2	0/1:0,111:31:111:1.00:2	0/1:1,79:31:80:0.988:2	0/1:58,49:32:107:0.458:2	0/1:1,124:32:125:0.992:2	0/1:47,50:32:97:0.515:2	./.
chr15	41483682	rs1971131	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,24:33:48:0.500:2	0/1:19,15:32:34:0.441:2	0/1:4,3:34:7:0.429:2	0/1:20,19:32:39:0.487:2	0/1:14,11:30:25:0.440:2	0/1:23,21:32:44:0.477:2	0/1:0,19:34:19:1.00:2	0/1:34,19:33:53:0.358:2	0/1:33,27:33:60:0.450:2	0/1:30,24:33:54:0.444:2	./.
chr15	41508037	rs8025916	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,42:32:88:0.477:2	./.	0/1:67,34:32:101:0.337:2	./.	0/1:60,63:33:123:0.512:2	./.	./.
chr15	41509288	rs7173086	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,5:32:22:0.227:2	0/1:6,6:33:12:0.500:2	./.	0/1:20,15:31:35:0.429:2	0/1:0,27:32:27:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,18:32:18:1.00:2	0/1:24,13:32:37:0.351:2	0/1:0,23:33:23:1.00:2	0/1:21,15:32:36:0.417:2	./.
chr15	41571609	rs141877975	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,17:32:54:0.315:2	./.	./.	./.	./.
chr15	41634587	rs7178634	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,28:32:81:0.346:2	0/1:0,41:32:41:1.00:2	0/1:40,32:32:72:0.444:2	0/1:0,53:32:53:1.00:2	./.	0/1:0,91:34:91:1.00:2	./.	./.
chr15	41634588	rs7178777	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,28:32:82:0.341:2	0/1:0,41:31:41:1.00:2	0/1:38,32:31:70:0.457:2	0/1:0,53:32:53:1.00:2	./.	0/1:0,91:32:91:1.00:2	./.	./.
chr15	41672384	rs7168431	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,4:32:13:0.308:2	0/1:8,4:33:12:0.333:2	./.	./.	0/1:12,9:33:21:0.429:2	./.	./.
chr15	41679685	rs12900702	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,32:33:69:0.464:2
chr15	41679717	rs73407109	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,10:31:24:0.417:2	./.	./.	./.	0/1:29,27:31:56:0.482:2	./.	./.
chr15	41688732	rs35227875	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,20:32:47:0.426:2	0/1:11,15:32:26:0.577:2	./.	./.	./.	0/1:38,33:32:71:0.465:2	./.	./.	./.	./.	./.
chr15	41689166	rs3204853	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,16:31:43:0.372:2	0/1:53,23:32:76:0.303:2	./.	./.	0/1:34,30:33:64:0.469:2	./.	./.
chr15	41689232	rs1899	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,9:32:27:0.333:2	0/1:22,8:31:30:0.267:2	0/1:15,15:32:30:0.500:2	./.	0/1:16,16:32:32:0.500:2	./.	./.
chr15	41749916	rs35588442	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,69:32:141:0.489:2	./.	./.	./.	./.	./.	./.
chr15	41763442	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:31:98:0.041:2	./.	./.	./.	./.	./.
chr15	41785690	rs41277684	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,26:33:45:0.578:2	./.	./.
chr15	41795018	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:32:52:0.077:2	./.	./.	./.
chr15	41797036	rs140642102	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,17:31:42:0.405:2	./.	./.	./.	./.
chr15	41797669	rs144858308	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,67:31:126:0.532:2	./.	./.	./.	./.	./.	./.	./.
chr15	41798142	rs35932273	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,28:31:48:0.583:2	./.	./.	./.	0/1:27,27:31:54:0.500:2	./.	./.
chr15	41799848	rs10152795	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,8:31:30:0.267:2	./.	./.	./.	./.
chr15	41805237	rs2305030	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,13:31:18:0.722:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	41809992	rs149632737	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,67:28:157:0.427:2	./.	./.	./.
chr15	41810368	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:32:69:0.058:2	./.	./.	./.	./.
chr15	41813279	rs3743031	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,31:32:81:0.383:2	0/1:36,20:32:56:0.357:2	0/1:14,8:32:22:0.364:2	0/1:66,47:32:113:0.416:2	./.	0/1:2,98:31:100:0.980:2	0/1:70,50:31:120:0.417:2	./.	./.	0/1:0,87:31:87:1.00:2	0/1:50,68:32:118:0.576:2
chr15	41814403	rs374429870	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:32:187:0.022:2	./.
chr15	41815516	rs8027526	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,115:32:115:1.00:2	0/1:0,104:31:104:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,131:32:131:1.00:2	0/1:0,121:32:121:1.00:2	0/1:0,113:33:113:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,106:31:106:1.00:2
chr15	41819101	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:32:130:0.031:2	./.	./.	./.
chr15	41819367	rs11630901	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,44:32:99:0.444:2	./.	0/1:71,63:33:134:0.470:2	./.	0/1:59,41:32:100:0.410:2	0/1:44,53:33:97:0.546:2
chr15	41819716	rs1200345	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,46:31:80:0.575:2	0/1:37,22:31:59:0.373:2	./.	./.	0/1:37,30:32:67:0.448:2	0/1:47,42:31:89:0.472:2	./.	0/1:34,34:32:68:0.500:2
chr15	41820200	rs2289741	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,20:33:30:0.667:2	0/1:15,12:32:27:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	41821679	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:30:52:0.077:2
chr15	41821752	rs1200349	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,23:31:65:0.354:2	0/1:35,19:31:54:0.352:2	./.	./.	0/1:49,21:32:70:0.300:2	0/1:46,30:33:76:0.395:2	./.	0/1:28,36:32:64:0.563:2
chr15	41822078	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,10:33:23:0.435:2	./.	./.	./.	./.	./.	./.	./.
chr15	41827781	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:34:80:0.050:2
chr15	41829178	rs112536229	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,68:32:155:0.439:2	./.	./.	./.	./.
chr15	41829230	rs721772	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,27:33:61:0.443:2	0/1:22,18:32:40:0.450:2	0/1:5,2:36:7:0.286:2	0/1:55,30:33:85:0.353:2	0/1:2,103:32:105:0.981:2	0/1:0,100:33:100:1.00:2	0/1:59,69:33:128:0.539:2	0/1:44,50:32:94:0.532:2	0/1:45,45:34:90:0.500:2	0/1:0,61:32:61:1.00:2	0/1:31,36:32:67:0.537:2
chr15	41854858	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:30:71:0.056:2	./.	./.	./.	./.
chr15	41857303	rs2277536	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,15:29:43:0.349:2	./.	./.	./.	0/1:36,27:29:63:0.429:2	./.	0/1:10,26:29:36:0.722:2	./.
chr15	41860490	rs12148316	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,13:30:52:0.250:2	./.	./.	./.	./.	0/1:17,46:30:63:0.730:2	0/1:28,11:31:39:0.282:2	0/1:30,18:31:48:0.375:2	./.	0/1:18,16:31:34:0.471:2	0/1:35,25:29:60:0.417:2
chr15	41862436	rs201371674	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,3:34:59:0.051:2	./.	./.	./.	./.
chr15	41862801	rs200684350	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:48,3:33:51:0.059:2	./.	./.	./.	0/1:58,8:32:66:0.121:2	0/1:68,7:30:75:0.093:2	0/1:61,12:32:73:0.164:2	./.	./.	./.	./.
chr15	41863317	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:32:171:0.023:2	./.	./.	./.	./.
chr15	41863869	rs144866887	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:31:93:0.043:2	./.	./.
chr15	41865525	rs62001448	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:70,9:32:79:0.114:2	0/1:29,6:30:35:0.171:2	./.	./.	0/1:90,23:29:113:0.204:2	0/1:100,20:29:120:0.167:2	0/1:107,22:31:129:0.171:2	./.	./.	./.	./.
chr15	41870216	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,14:31:194:0.072:2	./.	./.	./.	./.
chr15	41870464	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:33:80:0.050:2
chr15	41991315	rs2178004	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:31:87:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,84:31:85:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,83:30:83:1.00:2	0/1:0,66:31:67:1.00:2	0/1:0,95:31:95:1.00:2	./.	0/1:0,90:31:90:1.00:2	0/1:77,55:30:133:0.417:2
chr15	42002971	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,4:32:65:0.062:2	./.	./.	./.	./.	./.	./.	./.
chr15	42003166	rs182642948	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,16:33:48:0.333:2	./.	./.	./.	./.	./.	./.	./.
chr15	42019421	rs61736067	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,13:30:33:0.394:2	./.	./.	./.	./.
chr15	42021512	rs17677811	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,65:30:141:0.461:2	0/1:32,47:29:79:0.595:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	42026764	rs1918314	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:32:29:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,26:31:26:1.00:2	0/1:15,11:30:26:0.423:2	0/1:0,30:31:30:1.00:2	./.	0/1:0,43:31:43:1.00:2	0/1:30,28:32:59:0.483:2
chr15	42028780	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:34:135:0.030:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	42032383	rs17677991	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,16:30:19:0.842:2	0/1:1,132:31:133:0.992:2	./.	./.	0/1:66,52:31:118:0.441:2	0/1:86,81:30:167:0.485:2	./.	0/1:52,52:30:104:0.500:2	./.
chr15	42041712	rs2695163	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:33:28:1.00:2	0/1:1,22:32:23:0.957:2	0/1:0,6:30:6:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,45:31:45:1.00:2	0/1:30,24:31:54:0.444:2	0/1:0,55:31:55:1.00:2	./.	0/1:0,39:32:39:1.00:2	0/1:32,26:32:58:0.448:2
chr15	42058405	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:33:91:0.044:2	./.
chr15	42058537	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:33:79:0.051:2
chr15	42105918	rs1201689	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,62:30:122:0.508:2	0/1:35,28:29:63:0.444:2	0/1:15,11:30:26:0.423:2	0/1:173,9:30:182:0.049:2	0/1:102,84:31:186:0.452:2	0/1:1,166:30:167:0.994:2	./.	0/1:89,84:30:173:0.486:2	./.	0/1:76,85:30:161:0.528:2	0/1:82,62:30:144:0.431:2
chr15	42109223	rs1197689	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,21:33:49:0.429:2	0/1:13,17:31:30:0.567:2	0/1:0,13:31:13:1.00:2	0/1:0,60:32:60:1.00:2	0/1:80,55:31:135:0.407:2	0/1:0,76:31:76:1.00:2	0/1:3,105:32:108:0.972:2	0/1:1,95:32:96:0.990:2	0/1:0,46:33:46:1.00:2	0/1:0,64:32:65:1.00:2	0/1:0,49:32:49:1.00:2
chr15	42110783	rs150920206	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,51:31:133:0.383:2
chr15	42115152	rs61729966	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,4:33:17:0.235:2
chr15	42115747	rs3959569	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,89:33:89:1.00:2	./.	./.	0/1:56,49:33:105:0.467:2	0/1:60,41:33:101:0.406:2	./.	0/1:24,37:33:61:0.607:2	./.
chr15	42120342	rs151053095	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,7:23:10:0.700:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	42134097	rs3816533	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:22,44:32:66:0.667:2	0/1:13,8:32:21:0.381:2	./.	./.	0/1:39,44:32:83:0.530:2	./.	./.	./.	./.	./.	./.
chr15	42134416	rs117260632	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,26:32:48:0.542:2	./.	./.
chr15	42135952	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:31:93:0.043:2	./.	./.	./.	./.	./.
chr15	42135988	rs1672466	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:31:75:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,86:30:86:1.00:2	0/1:0,81:30:81:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,76:30:76:1.00:2	0/1:0,96:31:96:1.00:2	./.	0/1:0,71:31:71:1.00:2	0/1:21,33:32:54:0.611:2
chr15	42137201	rs34807597	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,14:31:20:0.700:2	./.	./.	./.	./.
chr15	42138456	rs1197669	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:31,29:31:60:0.483:2	0/1:25,9:30:34:0.265:2	./.	./.	0/1:39,30:31:69:0.435:2	0/1:0,49:29:49:1.00:2	./.	0/1:56,37:31:93:0.398:2	./.	0/1:40,39:31:79:0.494:2	0/1:37,36:31:73:0.493:2
chr15	42138572	rs36126315	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,22:31:71:0.310:2	./.	./.	./.	./.
chr15	42139642	rs883329	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:22,34:32:56:0.607:2	0/1:23,19:32:42:0.452:2	./.	./.	0/1:27,42:32:69:0.609:2	./.	0/1:51,3:33:54:0.056:2	./.	./.	./.	./.
chr15	42139875	rs34424865	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,52:29:96:0.542:2	./.	./.	./.	./.
chr15	42139902	rs112791822	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,63:32:145:0.434:2	./.	./.	./.	./.
chr15	42143118	rs78489122	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,36:32:67:0.537:2	0/1:31,24:31:55:0.436:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	42143251	rs28627803	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,3:28:9:0.333:2	0/1:81,51:30:132:0.386:2	0/1:94,20:28:114:0.175:2	./.	0/1:61,52:30:113:0.460:2	./.	0/1:84,59:30:143:0.413:2	0/1:33,34:30:67:0.507:2	./.
chr15	42143533	rs1197665	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,86:31:87:0.989:2	0/1:0,30:31:30:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,86:31:86:1.00:2	0/1:63,48:32:111:0.432:2	0/1:0,73:32:73:1.00:2	0/1:1,129:32:130:0.992:2	0/1:0,120:32:120:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,97:31:97:1.00:2
chr15	42143571	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,30:28:58:0.517:2	./.	./.	./.	./.	./.	./.	./.
chr15	42145049	rs55978013	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,31:31:49:0.633:2	./.	0/1:13,12:30:25:0.480:2
chr15	42145936	rs1197660	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,15:32:25:0.600:2	0/1:15,10:32:25:0.400:2	./.	./.	0/1:33,20:32:53:0.377:2	0/1:1,41:32:42:0.976:2	./.	./.	./.	0/1:15,15:33:30:0.500:2	0/1:14,8:33:22:0.364:2
chr15	42147805	rs368037342	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,27:31:47:0.574:2	./.
chr15	42149472	rs1456235	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,25:28:50:0.500:2	0/1:18,12:30:30:0.400:2	./.	0/1:3,49:29:52:0.942:2	0/1:0,99:29:99:1.00:2	./.	0/1:68,40:30:108:0.370:2	0/1:2,88:29:90:0.978:2	0/1:46,31:29:77:0.403:2	0/1:27,22:28:49:0.449:2	./.
chr15	42149506	rs12442525	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,13:30:32:0.406:2	0/1:21,8:30:29:0.276:2	0/1:8,3:30:11:0.273:2	0/1:1,36:29:37:0.973:2	0/1:35,42:28:77:0.545:2	./.	0/1:52,19:27:71:0.268:2	0/1:1,54:28:55:0.982:2	0/1:36,21:29:57:0.368:2	./.	./.
chr15	42149596	rs1197675	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,15:28:32:0.469:2	0/1:7,9:30:16:0.563:2	./.	./.	0/1:13,9:28:22:0.409:2	0/1:1,33:28:34:0.971:2	0/1:6,7:33:13:0.538:2	./.	./.	0/1:11,12:29:23:0.522:2	0/1:19,7:26:26:0.269:2
chr15	42150888	rs890503	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:58,42:31:100:0.420:2	0/1:30,30:30:60:0.500:2	0/1:9,3:31:12:0.250:2	./.	0/1:80,87:29:167:0.521:2	0/1:1,168:30:169:0.994:2	./.	./.	./.	0/1:53,54:30:107:0.505:2	0/1:54,50:31:104:0.481:2
chr15	42151126	rs61753581	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,14:29:29:0.483:2	./.	./.	./.	./.
chr15	42154738	rs16972193	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:34,48:30:83:0.585:2	0/1:24,30:30:54:0.556:2	./.	./.	0/1:57,64:29:122:0.529:2	./.	./.	./.	./.	0/1:58,44:29:103:0.431:2	./.
chr15	42159290	rs2290553	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.	0/1:0,5:31:5:1.00:2	./.	./.	./.	./.	./.
chr15	42162126	rs61741913	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,5:32:11:0.455:2	./.	./.	./.	./.
chr15	42166500	rs12593397	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,26:30:50:0.520:2	0/1:20,19:30:39:0.487:2	0/1:0,6:30:6:1.00:2	0/1:46,34:31:80:0.425:2	0/1:62,38:30:100:0.380:2	./.	0/1:75,34:30:109:0.312:2	0/1:0,88:31:88:1.00:2	./.	0/1:36,22:32:58:0.379:2	./.
chr15	42166645	rs61753617	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,16:32:34:0.471:2	./.	./.	./.	./.	0/1:19,17:33:36:0.472:2	./.
chr15	42168373	rs61748710	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,36:32:93:0.387:2	./.	./.	./.	./.
chr15	42168400	rs2290559	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,17:31:40:0.425:2	0/1:20,8:31:28:0.286:2	./.	0/1:35,36:30:71:0.507:2	0/1:50,48:30:98:0.490:2	0/1:1,86:30:87:0.989:2	./.	./.	./.	0/1:11,30:31:41:0.732:2	0/1:15,24:31:40:0.615:2
chr15	42169129	rs55757140	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,19:32:37:0.514:2	./.	./.
chr15	42170578	rs747779	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,54:31:113:0.478:2	./.	./.
chr15	42171462	rs12708402	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,10:31:22:0.455:2	0/1:10,6:32:16:0.375:2	./.	./.	0/1:37,20:31:57:0.351:2	0/1:38,23:31:61:0.377:2	./.	./.	./.	0/1:23,14:32:37:0.378:2	0/1:22,10:31:32:0.313:2
chr15	42171483	rs1197682	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,18:31:54:0.333:2	./.	./.
chr15	42171537	rs1197683	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:29:31:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,54:30:54:1.00:2	0/1:1,53:29:54:0.981:2	0/1:0,60:29:60:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,69:29:69:1.00:2	0/1:31,22:27:54:0.415:2	0/1:0,29:28:29:1.00:2	0/1:32,17:28:49:0.347:2
chr15	42178122	rs2280016	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,29:33:69:0.420:2	./.	./.
chr15	42178155	rs1210795	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:29:40:1.00:2	0/1:0,44:30:44:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,33:29:33:1.00:2	0/1:2,22:29:24:0.917:2	0/1:0,46:29:46:1.00:2	0/1:0,27:28:27:1.00:2	0/1:0,39:28:39:1.00:2	0/1:47,24:29:71:0.338:2	0/1:0,34:28:34:1.00:2	0/1:43,9:26:52:0.173:2
chr15	42193351	rs183492226	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,68:33:131:0.519:2	./.	./.	./.	./.
chr15	42211486	rs1704396	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,7:33:24:0.292:2	0/1:14,5:32:19:0.263:2	./.	0/1:15,20:34:35:0.571:2	0/1:15,5:32:20:0.250:2	0/1:18,15:33:33:0.455:2	0/1:2,36:32:38:0.947:2	./.	0/1:0,49:34:49:1.00:2	0/1:14,11:32:25:0.440:2	0/1:0,33:33:33:1.00:2
chr15	42211663	rs16972253	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,33:31:69:0.478:2	./.	./.	./.	./.
chr15	42235316	rs11549015	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,20:31:49:0.408:2	./.	./.	./.
chr15	42276710	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,6:26:110:0.055:2	./.	./.	./.
chr15	42281719	rs1668579	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,11:27:29:0.379:2	0/1:11,12:31:23:0.522:2	./.	./.	./.	0/1:28,24:30:52:0.462:2	0/1:2,49:30:51:0.961:2	./.	0/1:22,22:29:44:0.500:2	0/1:5,21:31:26:0.808:2	0/1:0,21:28:21:1.00:2
chr15	42287578	rs1668586	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:31:36:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,53:32:53:1.00:2	0/1:2,82:32:84:0.976:2	0/1:0,62:31:62:1.00:2	./.	0/1:0,104:32:104:1.00:2	0/1:0,58:33:58:1.00:2	0/1:0,33:32:33:1.00:2	./.
chr15	42287606	rs4924595	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,49:32:97:0.505:2	./.	./.	./.	0/1:0,50:32:50:1.00:2
chr15	42302338	rs28736629	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,6:33:21:0.286:2	0/1:7,4:33:11:0.364:2	./.	./.	./.	0/1:18,3:29:21:0.143:2	0/1:14,4:32:18:0.222:2	./.	./.	./.	./.
chr15	42302433	rs9920802	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:19,8:29:27:0.296:2	0/1:7,5:28:12:0.417:2	./.	./.	./.	./.	0/1:31,8:31:39:0.205:2	./.	./.	0/1:26,4:30:30:0.133:2	0/1:35,23:29:58:0.397:2
chr15	42302437	rs9920824	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,9:29:28:0.321:2	0/1:7,4:28:11:0.364:2	./.	./.	./.	0/1:24,4:30:28:0.143:2	0/1:31,8:30:39:0.205:2	./.	./.	./.	0/1:32,24:30:56:0.429:2
chr15	42342818	rs1668545	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,67:30:164:0.409:2
chr15	42342824	rs1668546	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,64:29:162:0.398:2
chr15	42360950	rs750051	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,16:32:24:0.667:2	./.	./.	./.	./.	./.	./.	0/1:0,85:32:85:1.00:2	./.
chr15	42361022	rs750052	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:32:14:0.571:2	./.	./.	./.	./.	./.	./.	0/1:0,87:32:87:1.00:2	./.
chr15	42363012	rs17690899	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	0/1:0,28:31:28:1.00:2	./.
chr15	42363043	rs74678783	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,14:33:14:1.00:2	./.
chr15	42363078	rs77186114	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,14:33:14:1.00:2	./.
chr15	42363395	rs78165678	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,54:30:54:1.00:2	./.
chr15	42363480	rs17747505	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,16:30:16:1.00:2	./.
chr15	42371752	rs4924618	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:30:11:0.273:2	./.	./.	./.	./.	./.	./.	./.
chr15	42373691	rs116725664	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,38:32:96:0.396:2	./.	./.	./.	./.
chr15	42373810	rs11635685	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,7:30:13:0.538:2	0/1:51,42:28:93:0.452:2	./.	./.	0/1:31,41:28:72:0.569:2	./.	./.	./.	0/1:26,23:28:49:0.469:2
chr15	42377307	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:33:78:0.052:2
chr15	42377744	rs605253	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:32:67:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,10:32:10:1.00:2	0/1:2,91:33:93:0.978:2	0/1:1,108:32:109:0.991:2	0/1:31,35:31:66:0.530:2	0/1:50,31:32:81:0.383:2	0/1:2,94:33:96:0.979:2	0/1:48,48:33:96:0.500:2	0/1:1,79:33:80:0.988:2	0/1:0,51:32:51:1.00:2
chr15	42379594	rs4924619	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,12:32:22:0.545:2	./.	./.	./.	./.	./.	./.	0/1:2,111:32:113:0.982:2	./.
chr15	42386630	rs75734921	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,53:30:53:1.00:2	./.
chr15	42434254	rs655427	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,33:31:76:0.434:2	0/1:26,21:31:47:0.447:2	./.	0/1:1,84:30:86:0.988:2	0/1:39,42:30:81:0.519:2	./.	0/1:4,65:29:69:0.942:2	0/1:1,92:31:93:0.989:2	0/1:1,80:32:81:0.988:2	./.	0/1:1,99:31:100:0.990:2
chr15	42434338	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:31:127:0.032:2	./.	./.	./.	./.	./.
chr15	42434824	rs28674123	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,12:32:45:0.267:2	0/1:18,19:32:37:0.514:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	42434837	rs1356410	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:13,34:30:47:0.723:2	0/1:19,19:29:38:0.500:2	0/1:0,10:31:10:1.00:2	./.	0/1:0,72:30:72:1.00:2	0/1:0,79:30:79:1.00:2	0/1:40,33:30:73:0.452:2	0/1:46,37:29:83:0.446:2	0/1:49,23:30:72:0.319:2	./.	0/1:35,21:29:56:0.375:2
chr15	42438380	rs80108792	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,40:30:75:0.533:2	./.	./.	./.	./.
chr15	42439376	rs4923929	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,8:30:17:0.471:2	./.	./.	0/1:0,29:31:29:1.00:2	0/1:0,9:31:9:1.00:2	./.	0/1:0,22:32:22:1.00:2	0/1:0,16:31:16:1.00:2	0/1:9,12:31:21:0.571:2	0/1:0,17:31:17:1.00:2	0/1:17,6:32:23:0.261:2
chr15	42439924	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,7:16:35:0.200:2	./.	./.	./.
chr15	42439934	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,5:21:29:0.172:2	./.	./.	./.	./.	./.	./.	./.
chr15	42442823	rs73403546	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,77:32:139:0.554:2	./.	./.	./.	./.
chr15	42442881	rs140725579	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,75:32:191:0.393:2	./.	./.	./.
chr15	42445554	rs10220859	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,39:31:77:0.506:2	./.	./.	./.	./.
chr15	42448659	rs636604	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,32:30:80:0.400:2	./.	./.	./.
chr15	42458347	rs663454	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,48:29:97:0.495:2	./.	./.	./.
chr15	42459034	rs1619030	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,43:33:101:0.430:2	0/1:64,47:33:111:0.423:2	./.	./.	./.
chr15	42483769	rs647581	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,26:32:39:0.667:2	./.	./.	./.
chr15	42568547	rs17857488	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:33:62:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,94:33:94:1.00:2	0/1:0,48:32:49:1.00:2	0/1:0,89:33:89:1.00:2
chr15	42570718	rs8024732	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:30:96:1.00:2	./.	0/1:0,11:30:11:1.00:2	0/1:0,145:30:145:1.00:2	0/1:2,89:30:91:0.978:2	0/1:0,110:29:110:1.00:2	0/1:99,45:31:144:0.313:2	0/1:112,67:30:179:0.374:2	./.	0/1:0,128:29:128:1.00:2	0/1:1,141:30:142:0.993:2
chr15	42579948	rs8037627	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:31:24:1.00:2	0/1:0,20:28:20:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,21:31:21:1.00:2	0/1:1,15:30:16:0.938:2	0/1:0,28:29:28:1.00:2	./.	0/1:0,27:30:27:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,42:28:42:1.00:2
chr15	42585029	rs112976629	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,32:31:87:0.368:2	./.	./.	./.	./.	./.
chr15	42585099	rs16973015	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,35:31:88:0.398:2	./.	./.	./.
chr15	42602488	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,6:32:119:0.050:2	./.
chr15	42618531	rs2578652	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,59:33:118:0.500:2	./.	0/1:61,52:32:114:0.460:2
chr15	42621623	rs115265256	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,22:31:48:0.458:2	./.	./.	./.	./.
chr15	42622814	rs370945492	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:32:118:0.034:2	./.	./.	./.	./.	./.
chr15	42631928	rs36023127	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,29:29:56:0.518:2	0/1:51,32:29:83:0.386:2	./.	./.	./.
chr15	42631976	rs35039186	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,53:30:87:0.609:2	0/1:54,41:30:95:0.432:2	./.	./.	./.
chr15	42637943	rs16973137	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,33:33:88:0.375:2	0/1:84,63:30:147:0.429:2	./.	./.	./.
chr15	42637944	rs115084894	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,32:32:91:0.352:2	./.	./.	./.	./.
chr15	42643529	rs7181742	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,23:33:48:0.479:2	0/1:59,29:33:88:0.330:2	./.	./.	./.
chr15	42644231	rs150055767	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,45:31:111:0.405:2	./.	./.	./.
chr15	42652065	rs28364364	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,31:31:59:0.525:2	./.	./.	./.	./.
chr15	42652076	rs61735534	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,29:29:55:0.527:2	./.	./.	./.	./.
chr15	42652099	rs1801496	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,20:27:52:0.385:2	0/1:51,35:29:86:0.407:2	./.	./.	./.
chr15	42652248	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,3:32:34:0.088:2	./.	./.	./.	./.	./.
chr15	42680058	rs17593	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,90:28:186:0.484:2	0/1:103,82:29:185:0.443:2	./.	./.	./.
chr15	42681199	rs1801449	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,43:31:101:0.426:2	0/1:74,36:30:110:0.327:2	./.	./.	./.
chr15	42684923	rs28364442	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,50:32:83:0.602:2	./.	./.	./.	./.
chr15	42720288	rs11544099	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:34,22:33:56:0.393:2	0/1:8,10:33:18:0.556:2	./.	./.	0/1:27,18:32:45:0.400:2	0/1:36,30:32:66:0.455:2	./.	./.	./.	0/1:1,40:33:41:0.976:2	./.
chr15	42731300	rs189641155	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,5:32:16:0.313:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	42740625	rs113998025	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,83:29:180:0.461:2	./.	./.	./.	./.
chr15	42742140	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,5:30:168:0.030:2	./.
chr15	42742464	rs12101559	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,59:33:126:0.468:2	./.	./.	./.	./.
chr15	42744094	rs12440118	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:42,37:30:79:0.468:2	0/1:25,27:29:52:0.519:2	./.	./.	0/1:2,77:30:79:0.975:2	0/1:63,41:29:104:0.394:2	./.	./.	./.	0/1:1,67:30:68:0.985:2	./.
chr15	42820589	rs1060291	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,29:32:46:0.630:2	0/1:20,12:32:32:0.375:2	./.	./.	0/1:1,49:32:50:0.980:2	0/1:38,35:32:73:0.479:2	0/1:31,45:32:76:0.592:2	0/1:50,42:32:92:0.457:2	./.	0/1:0,58:33:58:1.00:2	./.
chr15	43017426	rs16957091	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,7:31:12:0.583:2	0/1:37,45:33:82:0.549:2	./.	./.	0/1:45,30:31:75:0.400:2	0/1:67,36:32:103:0.350:2	./.	./.	0/1:46,35:33:81:0.432:2
chr15	43020983	rs8023524	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,80:31:174:0.460:2	./.	./.	0/1:60,56:31:116:0.483:2
chr15	43023482	rs12917189	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,50:29:106:0.472:2	0/1:54,39:29:93:0.419:2	./.	./.	0/1:65,36:27:101:0.356:2
chr15	43027835	rs76599133	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,14:31:22:0.636:2	./.	./.	./.	./.
chr15	43028592	rs7167392	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:31:3:0.667:2	0/1:2,7:29:9:0.778:2	./.	./.	./.	0/1:10,6:29:16:0.375:2	./.	./.	0/1:3,9:31:12:0.750:2
chr15	43028912	rs186189866	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,15:30:46:0.326:2	./.	./.	./.	./.	./.
chr15	43038037	.	T	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:134,31:10:165:0.188:2	./.	./.	0/1:144,24:10:168:0.143:2	0/1:136,36:9:172:0.209:2	0/1:147,31:9:178:0.174:2	0/1:148,29:8:177:0.164:2	./.	./.	0/1:135,32:9:167:0.192:2	0/1:121,27:12:148:0.182:2
chr15	43102906	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,4:32:47:0.085:2	./.	./.	./.	./.	./.	./.
chr15	43170793	rs6493068	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,37:31:88:0.420:2	./.	./.	0/1:59,35:30:94:0.372:2	./.	0/1:0,76:31:76:1.00:2	./.	0/1:45,35:29:80:0.438:2
chr15	43170823	rs16957250	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,52:31:53:0.981:2	./.	./.
chr15	43237572	rs16957277	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,6:32:22:0.273:2	0/1:87,66:33:153:0.431:2	./.	./.	./.	./.	./.	./.	./.
chr15	43244587	rs141227308	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,29:31:58:0.500:2	./.	./.
chr15	43307920	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:32:80:0.050:2	./.	./.	./.	./.
chr15	43328773	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:34:122:0.033:2	./.	./.	./.
chr15	43351959	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:31:139:0.029:2	./.	./.	./.	./.	./.
chr15	43360159	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,57:32:132:0.432:2
chr15	43363088	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,4:32:33:0.121:2	./.	./.	./.	./.	./.	./.	./.
chr15	43507393	rs1042168	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,67:32:154:0.435:2	./.	./.	./.	./.
chr15	43512995	rs77809780	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,19:31:35:0.543:2	./.	./.	./.	./.
chr15	43527871	rs7171797	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,72:30:174:0.414:2	./.	./.	./.	./.
chr15	43531411	rs28756768	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,18:33:65:0.277:2	./.	0/1:0,54:34:54:1.00:2	./.	./.
chr15	43533091	rs34222269	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,57:30:199:0.286:2	./.	./.	./.	./.
chr15	43545728	rs555001	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,21:32:50:0.420:2	./.	0/1:33,11:32:44:0.250:2	0/1:24,23:31:47:0.489:2	0/1:0,35:32:35:1.00:2	0/1:0,40:32:40:1.00:2	./.	0/1:18,17:33:35:0.486:2
chr15	43552663	rs148913728	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,102:31:173:0.590:2	./.	./.	./.
chr15	43568794	rs59900401	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,36:32:77:0.468:2	./.	./.	./.	./.
chr15	43571390	rs567357	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,6:30:11:0.545:2	0/1:58,69:29:127:0.543:2	./.	0/1:63,48:29:111:0.432:2	0/1:58,59:29:117:0.504:2	0/1:1,121:29:122:0.992:2	0/1:0,120:29:120:1.00:2	./.	0/1:49,51:28:100:0.510:2
chr15	43571463	rs148818002	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,68:32:119:0.571:2	./.	./.	./.	./.	./.
chr15	43571977	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,4:24:28:0.143:2
chr15	43579566	rs513970	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,6:30:7:0.857:2	0/1:72,78:29:150:0.520:2	./.	0/1:67,58:30:125:0.464:2	0/1:75,54:31:129:0.419:2	0/1:2,126:29:129:0.984:2	0/1:0,113:28:113:1.00:2	./.	0/1:40,64:29:104:0.615:2
chr15	43584193	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:33:99:0.040:2	./.	./.
chr15	43620865	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,4:31:101:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr15	43621947	rs3742969	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,18:32:41:0.439:2	./.	./.	0/1:17,5:29:22:0.227:2	0/1:17,18:32:35:0.514:2	0/1:20,13:34:33:0.394:2	./.	./.
chr15	43622050	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,4:31:87:0.046:2	./.	./.	./.	./.	./.	./.
chr15	43622265	rs3742970	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,11:29:32:0.344:2	0/1:12,14:31:26:0.538:2	./.	./.
chr15	43622843	rs182562483	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,23:31:60:0.383:2	./.	./.	./.
chr15	43627308	rs200149562	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,5:28:186:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	43628014	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	43628897	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:30:71:0.056:2	./.	./.	./.	./.	./.
chr15	43632549	rs2278857	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,21:29:58:0.362:2	./.	0/1:43,20:29:63:0.317:2	./.	0/1:0,52:30:52:1.00:2	0/1:2,57:29:59:0.966:2	./.	0/1:32,26:30:58:0.448:2
chr15	43653322	rs35278805	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:32:11:0.636:2	./.	./.	0/1:55,45:31:100:0.450:2	./.	0/1:72,36:32:108:0.333:2	0/1:63,39:32:103:0.382:2	./.	0/1:65,56:32:121:0.463:2
chr15	43653649	rs62019445	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.	./.	0/1:16,17:30:33:0.515:2	./.	0/1:16,33:32:49:0.673:2	./.	./.	./.
chr15	43658935	rs3917221	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:32:11:0.545:2	./.	./.	0/1:30,47:32:77:0.610:2	./.	0/1:60,42:32:102:0.412:2	0/1:61,35:32:96:0.365:2	./.	0/1:33,34:32:67:0.507:2
chr15	43661802	rs3809482	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,45:32:99:0.455:2	./.	0/1:58,37:33:95:0.389:2	0/1:29,28:32:57:0.491:2	0/1:2,96:32:98:0.980:2	0/1:0,78:33:78:1.00:2	./.	0/1:60,53:32:113:0.469:2
chr15	43687362	rs117773969	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,9:31:34:0.265:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	43690300	rs999025	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,17:30:42:0.405:2	./.	./.	./.	./.
chr15	43706332	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:33:110:0.036:2	./.	./.	./.	./.
chr15	43707808	rs2230451	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:32:9:0.444:2	./.	./.	0/1:46,50:32:96:0.521:2	./.	0/1:41,42:32:83:0.506:2	0/1:48,59:32:107:0.551:2	./.	0/1:49,48:33:97:0.495:2
chr15	43714135	rs200761797	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,59:33:129:0.457:2	./.	./.
chr15	43724646	rs2602141	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,7:32:14:0.500:2	0/1:59,53:33:112:0.473:2	0/1:119,5:34:124:0.040:2	0/1:67,69:32:136:0.507:2	0/1:58,34:33:92:0.370:2	0/1:64,52:32:116:0.448:2	0/1:1,127:34:130:0.992:2	./.	0/1:76,74:33:150:0.493:2
chr15	43748304	rs690367	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:34:6:0.667:2	0/1:44,34:31:78:0.436:2	./.	0/1:43,38:31:81:0.469:2	0/1:29,30:32:59:0.508:2	0/1:32,29:33:62:0.475:2	0/1:0,67:33:67:1.00:2	./.	0/1:39,32:32:71:0.451:2
chr15	43762142	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:30:68:0.059:2	./.
chr15	43762196	rs689647	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,39:30:71:0.549:2	./.	./.	0/1:20,17:29:37:0.459:2	./.	0/1:36,37:30:73:0.507:2	./.	./.
chr15	43767774	rs560191	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,3:33:12:0.250:2	0/1:41,26:32:67:0.388:2	./.	0/1:66,40:32:106:0.377:2	0/1:41,32:34:73:0.438:2	0/1:58,40:33:98:0.408:2	0/1:0,84:33:84:1.00:2	./.	0/1:52,36:34:88:0.409:2
chr15	43815999	rs3862138	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,36:30:58:0.621:2	./.	0/1:32,47:31:79:0.595:2	0/1:16,20:33:36:0.556:2	./.	0/1:41,27:31:68:0.397:2
chr15	43816917	rs1060939	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,5:32:8:0.625:2	0/1:38,33:31:71:0.465:2	./.	0/1:43,27:30:70:0.386:2	0/1:37,29:32:66:0.439:2	0/1:50,41:31:91:0.451:2	0/1:2,68:32:70:0.971:2	./.	0/1:37,20:30:58:0.351:2
chr15	43817404	rs12912505	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:31:10:0.600:2	./.	./.	0/1:46,39:30:85:0.459:2	./.	0/1:38,41:29:79:0.519:2	0/1:38,28:31:66:0.424:2	./.	0/1:48,31:29:79:0.392:2
chr15	43817406	rs480108	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,6:32:10:0.600:2	0/1:54,41:31:95:0.432:2	./.	0/1:47,39:31:86:0.453:2	0/1:73,50:30:123:0.407:2	0/1:38,41:30:79:0.519:2	0/1:0,66:31:66:1.00:2	./.	0/1:45,31:29:76:0.408:2
chr15	43817500	rs56321997	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,24:32:48:0.500:2	./.	./.	./.	./.	./.
chr15	43818052	rs2245715	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,10:31:28:0.357:2	./.	./.	0/1:8,9:32:17:0.529:2	./.	0/1:18,9:31:27:0.333:2	./.	./.
chr15	43818079	rs62020612	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,16:30:33:0.485:2	./.	0/1:16,21:30:37:0.568:2	0/1:7,13:32:20:0.650:2	./.	0/1:15,19:31:34:0.559:2
chr15	43818926	rs45569034	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,8:31:25:0.320:2	0/1:9,6:31:15:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	43819150	rs2229014	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,17:33:39:0.436:2	./.
chr15	43820423	rs28438815	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,16:31:27:0.593:2	./.	./.	./.	./.	./.	./.	./.
chr15	43820825	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,6:22:39:0.154:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	43821989	rs200714150	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,11:14:105:0.105:2	./.	./.	./.
chr15	43852697	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,3:32:37:0.081:2	./.	./.	0/1:56,16:32:72:0.222:2	./.	./.
chr15	43852703	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,3:32:37:0.081:2	0/1:41,8:33:49:0.163:2	./.	0/1:53,16:32:69:0.232:2	./.	./.
chr15	43856300	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:133,11:31:144:0.076:2	./.	./.	./.	./.	0/1:157,14:31:171:0.082:2	./.	./.
chr15	43856308	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,10:31:128:0.078:2	./.	./.	./.	./.	0/1:144,10:33:155:0.065:2	./.	./.
chr15	43856323	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,6:32:119:0.051:2	./.	./.	./.	./.	0/1:127,7:33:135:0.052:2	./.	./.
chr15	43856336	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,6:35:110:0.055:2	./.	./.
chr15	43856347	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,25:33:73:0.342:2	./.	./.	./.	./.	./.	./.	./.
chr15	43857117	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,28:29:163:0.173:2	./.	./.	./.	./.	0/1:145,25:29:170:0.147:2	./.	./.
chr15	43857125	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:142,28:32:170:0.165:2	./.	./.	./.	./.	0/1:141,26:31:167:0.156:2	./.	./.
chr15	43857154	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:120,16:30:136:0.118:2	./.	./.	./.	./.	0/1:119,23:29:142:0.162:2	./.	./.
chr15	43857181	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,11:31:104:0.106:2	./.	./.	./.	./.	0/1:89,13:31:102:0.127:2	./.	./.
chr15	43860694	rs142445902	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,21:30:100:0.212:2	./.	./.	./.	./.	0/1:99,32:33:131:0.244:2	./.	./.
chr15	43863655	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,18:32:77:0.234:2	./.	./.	./.	./.
chr15	43863658	rs139843849	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,22:31:87:0.253:2	0/1:40,11:33:51:0.216:2	0/1:2,3:31:5:0.600:2	0/1:22,72:33:94:0.766:2	0/1:32,33:32:65:0.508:2	0/1:32,65:32:97:0.670:2	0/1:25,48:32:73:0.658:2	0/1:42,60:32:102:0.588:2	0/1:0,63:33:63:1.00:2	0/1:59,22:32:81:0.272:2	0/1:25,59:31:84:0.702:2
chr15	43863741	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,5:32:68:0.074:2	./.	./.	./.	./.	./.	./.	./.
chr15	43863938	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,8:30:99:0.081:2	./.	./.	./.	./.	./.	./.	./.
chr15	43863950	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,11:31:112:0.098:2	./.	./.	./.	./.	0/1:88,6:32:94:0.064:2	./.	./.
chr15	43863985	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:120,8:28:128:0.063:2	./.	./.	./.	./.	0/1:106,16:29:122:0.131:2	./.	./.
chr15	43863991	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:124,8:29:132:0.061:2	./.	./.	./.	./.	0/1:104,17:29:121:0.140:2	./.	./.
chr15	43868596	rs148398780	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:77,63:30:140:0.450:2	0/1:39,30:30:69:0.435:2	0/1:2,13:29:15:0.867:2	0/1:126,42:29:168:0.250:2	0/1:90,72:29:163:0.444:2	0/1:33,104:29:138:0.759:2	0/1:141,53:30:194:0.273:2	0/1:61,127:29:188:0.676:2	0/1:95,80:30:175:0.457:2	0/1:60,62:29:126:0.508:2	0/1:94,65:29:159:0.409:2
chr15	43869426	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,4:30:24:0.167:2	./.
chr15	43871292	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr15	43875715	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,56:31:192:0.293:2	./.	0/1:147,33:32:180:0.183:2	0/1:138,51:32:189:0.270:2	./.	./.
chr15	43887608	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,51:31:198:0.258:2	./.	./.
chr15	43891426	rs144820945	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,59:32:142:0.415:2	./.	./.	./.	./.
chr15	43892807	rs2920791	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,7:32:16:0.438:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	43892808	rs2860666	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,7:33:16:0.438:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	43892847	rs12438025	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,60:33:148:0.405:2	./.	./.	./.	./.	0/1:82,63:34:145:0.434:2	./.	./.
chr15	43893072	rs3097773	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,70:30:154:0.455:2	./.	./.	0/1:108,71:29:179:0.397:2	./.	0/1:80,64:31:144:0.444:2	./.	./.
chr15	43893135	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,6:31:155:0.039:2
chr15	43893733	rs74643365	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,19:32:41:0.463:2	./.	./.	./.	./.	./.	0/1:18,28:31:46:0.609:2
chr15	43896306	rs138821063	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,5:28:125:0.040:2	./.	./.	0/1:128,5:32:133:0.038:2	./.	./.
chr15	43896309	rs140545217	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,5:29:122:0.041:2	./.	0/1:139,4:30:144:0.028:2	0/1:119,9:32:128:0.070:2	./.	./.
chr15	43896874	rs188549589	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,5:31:116:0.043:2	./.	./.	./.	./.
chr15	43897499	rs2920780	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:126,61:30:187:0.326:2	./.	./.	./.	./.	0/1:112,57:32:169:0.337:2	./.	./.
chr15	43900153	rs150548868	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,14:31:45:0.311:2	./.	./.	0/1:124,69:30:194:0.358:2	./.	0/1:121,69:32:190:0.363:2	0/1:110,86:32:196:0.439:2	./.	./.
chr15	43903129	rs56385906	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:133,42:32:175:0.240:2	0/1:149,38:31:187:0.203:2	./.	./.	./.	./.	0/1:161,20:32:181:0.110:2	./.	./.	0/1:147,41:32:188:0.218:2	./.
chr15	43905415	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,12:32:101:0.119:2	./.	./.	./.	./.
chr15	43907748	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,23:33:103:0.223:2	./.	0/1:73,21:33:94:0.223:2	0/1:69,28:33:97:0.289:2	./.	./.
chr15	43909710	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,11:15:95:0.117:2	./.	./.	./.	./.
chr15	43910286	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,9:28:34:0.265:2	./.	./.	./.	./.
chr15	43910440	rs143613180	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,18:33:31:0.581:2	./.	0/1:11,10:32:21:0.476:2	./.	0/1:7,12:33:19:0.632:2	0/1:0,12:33:12:1.00:2	./.	./.
chr15	43924420	rs144399798	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:83,7:31:90:0.078:2	0/1:72,5:31:77:0.065:2	./.	./.	./.	./.	./.	./.	./.	0/1:83,5:32:88:0.057:2	./.
chr15	43924422	rs142408593	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:88,7:32:95:0.074:2	0/1:70,5:32:75:0.067:2	./.	./.	./.	./.	./.	./.	./.	0/1:80,6:31:86:0.070:2	./.
chr15	43925037	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:140,7:33:147:0.048:2	./.	./.	./.	./.	0/1:130,4:33:134:0.030:2	./.	./.
chr15	43925092	rs143154095	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,11:30:57:0.193:2	./.	./.	./.	./.
chr15	43927370	rs12898584	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,16:33:26:0.615:2	./.	0/1:10,15:33:25:0.600:2	0/1:29,18:34:47:0.383:2	./.	./.
chr15	43939642	rs8042868	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,52:30:114:0.456:2	./.	./.	./.	./.	0/1:62,60:31:122:0.492:2	./.	./.
chr15	43987440	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,38:31:197:0.193:2	./.	./.
chr15	43991242	rs138484504	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,5:33:161:0.031:2	./.	./.	./.	./.
chr15	44038899	rs2411284	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:31:37:1.00:2	0/1:0,16:31:16:1.00:2	0/1:1,7:32:8:0.875:2	0/1:44,40:31:84:0.476:2	0/1:0,71:30:71:1.00:2	0/1:25,29:31:54:0.537:2	0/1:30,29:30:59:0.492:2	0/1:58,40:31:98:0.408:2	./.	0/1:1,42:30:43:0.977:2	0/1:1,39:31:40:0.975:2
chr15	44043793	rs28718261	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,18:32:31:0.581:2	./.	./.	./.	./.	0/1:25,22:33:47:0.468:2	./.	./.
chr15	44061802	rs1053492	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,86:33:89:0.966:2	0/1:5,40:31:45:0.889:2	0/1:5,4:32:9:0.444:2	0/1:77,47:32:124:0.379:2	0/1:9,51:31:60:0.850:2	0/1:49,37:32:86:0.430:2	0/1:51,27:32:78:0.346:2	0/1:63,45:32:108:0.417:2	./.	0/1:4,101:32:105:0.962:2	0/1:7,115:32:122:0.943:2
chr15	44062461	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:117,4:33:121:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr15	44062462	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,4:33:118:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr15	44069069	rs2277531	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,20:33:52:0.385:2	./.	./.	./.	./.	0/1:11,15:34:26:0.577:2	./.	./.
chr15	44093927	rs12702	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,23:32:62:0.371:2	./.	./.	./.	./.	0/1:34,50:32:84:0.595:2	./.	./.
chr15	44101970	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:32:161:0.025:2
chr15	44102010	rs2228368	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:117,78:31:195:0.400:2	./.	./.	./.	./.	0/1:111,85:31:196:0.434:2	./.	./.
chr15	44105459	rs150028567	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,67:32:150:0.447:2	0/1:48,49:31:97:0.505:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	44120559	rs678084	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,21:32:21:1.00:2	0/1:0,16:32:16:1.00:2	./.	0/1:0,16:33:16:1.00:2	0/1:0,28:32:28:1.00:2	0/1:6,9:31:15:0.600:2	0/1:0,31:33:31:1.00:2	0/1:12,11:33:23:0.478:2	0/1:21,10:33:31:0.323:2	0/1:0,25:33:25:1.00:2	0/1:0,17:31:17:1.00:2
chr15	44198049	rs2306674	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,65:30:133:0.489:2	./.	./.	0/1:75,39:30:114:0.342:2	./.	0/1:86,70:30:156:0.449:2	./.	./.
chr15	44211692	rs144455804	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,24:29:49:0.490:2
chr15	44581391	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,3:32:43:0.070:2	./.	./.	./.
chr15	44751350	rs78868451	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,25:32:50:0.500:2	./.	./.	./.	./.
chr15	44751352	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:32:87:0.046:2	./.	./.	./.	./.	./.
chr15	44783179	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:32:141:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	44788571	rs17514635	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,7:34:20:0.350:2	./.	./.	0/1:57,52:32:109:0.477:2	./.	./.	./.	./.	0/1:81,71:32:152:0.467:2
chr15	44849698	rs2303578	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,5:31:29:0.179:2	./.	./.	./.	./.	./.
chr15	44876453	rs369610623	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:99,4:32:103:0.039:2	./.	./.	./.	./.	./.	./.
chr15	44890903	rs76389165	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,38:33:81:0.469:2	./.	./.	./.	./.
chr15	44905642	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:34:184:0.022:2	./.	./.	./.
chr15	44925740	rs79708848	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,31:32:69:0.449:2	./.	./.	./.	./.	./.
chr15	44943757	rs3759871	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,58:33:99:0.586:2	0/1:24,26:33:50:0.520:2	0/1:8,15:33:23:0.652:2	0/1:0,124:32:124:1.00:2	0/1:43,39:32:82:0.476:2	0/1:0,101:32:101:1.00:2	./.	./.	0/1:69,51:34:120:0.425:2	0/1:53,37:32:90:0.411:2	0/1:54,59:33:113:0.522:2
chr15	44962224	rs146795158	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,60:33:97:0.619:2	./.	./.	./.	./.
chr15	44966389	rs8026845	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,93:32:93:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,139:32:139:1.00:2	0/1:0,139:31:139:1.00:2	0/1:0,125:32:125:1.00:2	0/1:0,135:31:135:1.00:2	0/1:0,157:32:157:1.00:2	0/1:0,136:32:136:1.00:2	0/1:0,121:32:121:1.00:2	0/1:0,115:32:115:1.00:2
chr15	44967887	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:31:57:0.070:2	./.	./.	./.	./.	./.
chr15	45047134	rs2470911	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,97:32:98:0.990:2	0/1:0,49:31:49:1.00:2	0/1:7,6:32:13:0.462:2	0/1:2,86:31:88:0.977:2	0/1:0,93:32:93:1.00:2	0/1:1,119:31:120:0.992:2	0/1:55,45:31:100:0.450:2	0/1:1,106:31:107:0.991:2	0/1:53,56:32:109:0.514:2	0/1:55,42:32:97:0.433:2	0/1:0,93:32:93:1.00:2
chr15	45047402	rs17588988	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,61:34:110:0.555:2	./.	./.
chr15	45047573	rs3100139	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,23:32:23:1.00:2	0/1:0,20:32:20:1.00:2	./.	0/1:0,20:32:20:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,40:31:40:1.00:2	0/1:16,9:31:25:0.360:2	0/1:0,20:32:20:1.00:2	0/1:10,9:31:19:0.474:2	0/1:8,14:31:22:0.636:2	0/1:0,34:31:34:1.00:2
chr15	45048651	rs3759880	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,22:32:39:0.564:2	0/1:17,18:31:35:0.514:2	./.
chr15	45051802	rs183577616	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,24:32:80:0.300:2	./.	./.	./.	./.
chr15	45335536	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:153,39:31:192:0.203:2	./.	./.	./.	./.	./.	./.
chr15	45335602	rs373270327	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:152,45:33:197:0.228:2	./.	./.	./.	./.	./.	./.	./.
chr15	45353284	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,14:30:164:0.085:2	./.	./.	./.	./.
chr15	45353285	rs367815523	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,14:31:164:0.085:2	./.	./.	./.	./.
chr15	45353365	rs11542063	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,34:26:83:0.415:2	./.
chr15	45361180	rs55739437	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:106,34:32:140:0.243:2	0/1:61,55:31:116:0.474:2	./.	0/1:136,41:32:178:0.232:2	./.	./.	./.	0/1:57,40:31:97:0.412:2
chr15	45364534	rs930337	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:31:3:1.00:2	0/1:0,5:31:5:1.00:2	0/1:3,87:30:91:0.967:2	./.	./.	./.	./.	0/1:1,42:31:45:0.977:2	0/1:1,36:32:38:0.973:2
chr15	45364598	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:34:194:0.021:2	./.
chr15	45365605	rs201113773	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:152,44:28:196:0.224:2	./.	./.	./.	./.	./.	./.
chr15	45365638	rs149213846	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:155,35:31:190:0.184:2	./.	./.	./.	./.	./.	./.
chr15	45365683	rs142417981	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:141,9:31:150:0.060:2	./.	./.	./.	./.	./.	./.
chr15	45365724	rs76283634	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:186,4:33:190:0.021:2	./.	./.	./.	0/1:146,4:32:150:0.027:2	./.	0/1:129,48:32:177:0.271:2	./.	./.	./.	0/1:131,44:32:175:0.251:2
chr15	45386806	rs56323146	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,48:29:109:0.440:2	./.	./.	./.	./.
chr15	45392075	rs269868	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,106:32:107:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,21:31:21:1.00:2	0/1:106,76:31:182:0.418:2	0/1:0,185:31:185:1.00:2	0/1:0,168:31:168:1.00:2	0/1:0,180:31:180:1.00:2	0/1:97,82:31:179:0.458:2	0/1:0,158:32:158:1.00:2	0/1:0,142:31:142:1.00:2	0/1:0,158:31:158:1.00:2
chr15	45392351	rs78876145	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,57:31:155:0.368:2	./.	./.	./.	./.
chr15	45393014	rs61730030	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,11:32:29:0.379:2	./.	./.	./.
chr15	45397889	rs73406334	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,36:31:78:0.462:2	./.	./.	./.
chr15	45397993	rs138353181	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,16:32:34:0.471:2	0/1:12,17:31:29:0.586:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	45398369	rs113400262	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,80:32:175:0.457:2	./.	./.	./.
chr15	45398438	rs57659670	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,67:27:142:0.472:2	0/1:55,58:29:113:0.513:2	./.	./.	./.
chr15	45398509	rs58361817	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,29:29:57:0.509:2	./.	./.	./.	./.	./.	./.	./.
chr15	45399574	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:176,5:31:181:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr15	45399576	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:31:168:0.024:2	./.
chr15	45399614	rs376118025	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,4:34:196:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr15	45400358	rs269860	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:30:43:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,7:31:7:1.00:2	0/1:16,19:31:35:0.543:2	0/1:0,21:28:21:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,40:30:40:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,32:30:32:1.00:2
chr15	45404066	rs2001616	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:31:54:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,10:30:10:1.00:2	0/1:43,65:31:108:0.602:2	0/1:0,53:30:53:1.00:2	0/1:2,95:31:97:0.979:2	0/1:23,31:31:54:0.574:2	0/1:36,44:31:80:0.550:2	0/1:0,81:32:81:1.00:2	0/1:1,56:31:57:0.982:2	0/1:0,49:31:49:1.00:2
chr15	45406821	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,52:30:101:0.515:2	./.	./.	./.	./.	./.	./.
chr15	45408414	rs2576090	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:30:54:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,76:30:76:1.00:2	0/1:0,51:29:51:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,81:30:81:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,95:30:95:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,67:30:67:1.00:2
chr15	45408874	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:33:116:0.034:2	./.	./.	./.
chr15	45409373	rs61733393	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,16:32:35:0.457:2	./.	./.	./.	./.	./.	./.	./.
chr15	45409732	rs61751061	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,48:32:121:0.397:2	0/1:129,62:32:191:0.325:2	./.	./.	./.
chr15	45412928	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:113,4:33:117:0.034:2	./.	./.	./.	./.	./.	./.
chr15	45412946	rs75981505	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,63:31:116:0.548:2	./.	./.	./.	./.
chr15	45413320	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:33:152:0.026:2	./.	./.	./.	./.
chr15	45415096	rs113753068	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,79:32:161:0.491:2	./.	./.	./.	./.
chr15	45433577	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,5:30:137:0.036:2	./.	./.
chr15	45437272	rs77233266	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:32:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	45443356	rs149431580	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,65:31:134:0.485:2	./.	./.	./.	./.	./.	./.	./.
chr15	45444133	rs16939752	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,49:29:121:0.405:2	./.	0/1:75,55:29:130:0.423:2	./.	./.	./.	0/1:78,55:29:133:0.414:2
chr15	45444518	rs1706804	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,43:27:84:0.512:2	0/1:24,24:28:48:0.500:2	0/1:8,15:29:23:0.652:2	0/1:72,66:28:138:0.478:2	0/1:0,172:28:172:1.00:2	0/1:2,144:28:146:0.986:2	0/1:78,95:28:173:0.549:2	0/1:87,75:28:162:0.463:2	0/1:0,99:28:99:1.00:2	0/1:0,75:27:75:1.00:2	0/1:39,45:27:84:0.536:2
chr15	45444572	rs114272662	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:113,78:33:191:0.408:2	./.	./.	./.	./.	./.	./.	./.
chr15	45446156	rs2458236	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,28:31:67:0.418:2	0/1:20,11:31:31:0.355:2	0/1:7,3:30:10:0.300:2	0/1:52,28:30:80:0.350:2	0/1:0,43:30:43:1.00:2	0/1:1,78:29:79:0.987:2	0/1:51,39:29:90:0.433:2	0/1:56,60:30:116:0.517:2	0/1:0,90:31:90:1.00:2	0/1:2,42:30:44:0.955:2	0/1:45,47:29:92:0.511:2
chr15	45448076	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:33:107:0.037:2	./.	./.	./.	./.
chr15	45448083	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,6:32:113:0.053:2	./.	./.
chr15	45456113	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,4:31:35:0.114:2	./.	./.	./.	./.	./.	./.
chr15	45467540	rs1632144	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,26:32:26:1.00:2	0/1:0,13:32:13:1.00:2	./.	0/1:0,18:33:18:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,29:32:29:1.00:2
chr15	45490988	rs201576115	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,30:31:89:0.337:2	./.	./.	./.	./.	./.	./.
chr15	45491136	rs62026667	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,7:32:9:0.778:2	./.	./.	./.	./.	./.	./.	./.	0/1:42,38:29:80:0.475:2
chr15	45545478	rs11854484	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,35:32:66:0.530:2	0/1:21,11:32:32:0.344:2	0/1:0,8:30:8:1.00:2	0/1:36,31:33:67:0.463:2	./.	0/1:0,69:32:69:1.00:2	./.	0/1:44,55:32:99:0.556:2	0/1:0,76:33:76:1.00:2	0/1:24,14:33:38:0.368:2	0/1:42,31:32:73:0.425:2
chr15	45554267	rs1060896	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,24:31:74:0.324:2	0/1:13,30:31:43:0.698:2	0/1:0,11:31:11:1.00:2	0/1:61,35:31:96:0.365:2	./.	0/1:2,92:31:94:0.979:2	./.	0/1:70,31:31:101:0.307:2	0/1:0,100:32:100:1.00:2	0/1:42,35:32:77:0.455:2	0/1:66,46:32:112:0.411:2
chr15	45556163	rs8023604	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,60:30:135:0.444:2	./.	./.	./.	./.	./.	./.	./.
chr15	45654327	rs1145086	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,25:33:46:0.543:2	0/1:14,10:33:24:0.417:2	./.	0/1:29,27:32:56:0.482:2	0/1:0,45:32:45:1.00:2	0/1:39,24:33:63:0.381:2	0/1:29,22:33:51:0.431:2	0/1:0,64:33:64:1.00:2	./.	0/1:21,26:32:47:0.553:2	0/1:0,39:32:39:1.00:2
chr15	45661678	rs1288775	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:53,49:33:102:0.480:2	0/1:25,19:31:44:0.432:2	./.	0/1:68,36:32:104:0.346:2	0/1:31,33:31:64:0.516:2	0/1:51,40:31:91:0.440:2	./.	0/1:0,79:32:79:1.00:2	./.	0/1:66,40:32:106:0.377:2	./.
chr15	45695382	rs7182723	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.
chr15	45695612	rs1346265	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,19:29:32:0.594:2	./.	./.	./.	./.	./.	./.	./.
chr15	45695695	rs1153849	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,6:31:20:0.300:2	0/1:2,9:29:11:0.818:2	./.	0/1:16,16:30:32:0.500:2	0/1:16,17:31:33:0.515:2	0/1:18,17:31:35:0.486:2	./.	0/1:0,53:29:53:1.00:2	./.	0/1:9,11:29:20:0.550:2	./.
chr15	45779810	rs2453531	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,51:31:51:1.00:2	0/1:0,25:31:25:1.00:2	0/1:26,22:30:48:0.458:2	0/1:0,24:32:24:1.00:2	./.	0/1:0,74:32:74:1.00:2	0/1:25,19:30:44:0.432:2	0/1:1,52:31:53:0.981:2
chr15	45847921	rs8042811	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,29:28:57:0.509:2	./.	0/1:53,45:29:98:0.459:2	./.	./.	./.	0/1:1,48:29:49:0.980:2
chr15	45968435	rs1044032	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,21:30:44:0.477:2	./.	./.	./.	./.	./.
chr15	45968502	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:29:75:0.053:2	./.	./.
chr15	45981317	rs10643	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:64,43:32:107:0.402:2	0/1:33,24:32:57:0.421:2	./.	./.	0/1:65,30:32:95:0.316:2	0/1:44,61:31:105:0.581:2	./.	./.	./.	./.	./.
chr15	48053229	rs501916	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,61:31:62:0.984:2	0/1:60,43:31:103:0.417:2	./.	0/1:70,50:31:120:0.417:2	./.	0/1:53,43:32:96:0.448:2	./.
chr15	48056958	rs3743281	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,51:32:56:0.911:2	./.	./.	0/1:37,32:31:69:0.464:2	./.	0/1:32,24:32:56:0.429:2	./.
chr15	48058071	rs532598	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,58:32:110:0.527:2	0/1:23,28:31:51:0.549:2	./.	./.	./.	0/1:71,63:31:134:0.470:2	0/1:60,41:32:101:0.406:2	./.	./.	0/1:34,49:32:83:0.590:2	0/1:0,129:31:129:1.00:2
chr15	48058339	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,9:24:134:0.067:2	./.
chr15	48063076	rs568215	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,14:31:39:0.359:2	0/1:18,13:32:31:0.419:2	0/1:2,5:32:7:0.714:2	0/1:34,28:31:62:0.452:2	0/1:0,40:32:40:1.00:2	0/1:19,18:30:38:0.486:2	0/1:23,20:32:43:0.465:2	0/1:24,36:31:60:0.600:2	./.	0/1:0,38:31:38:1.00:2	0/1:0,40:32:40:1.00:2
chr15	48063497	rs374871367	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,4:32:32:0.125:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	48443699	rs2470103	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:31:56:1.00:2	0/1:0,44:30:44:1.00:2	0/1:0,6:27:6:1.00:2	0/1:0,76:31:76:1.00:2	0/1:0,65:29:66:1.00:2	0/1:0,78:30:78:1.00:2	0/1:2,65:31:67:0.970:2	0/1:1,93:29:94:0.989:2	0/1:0,60:32:60:1.00:2	0/1:0,42:30:42:1.00:2	0/1:0,57:31:57:1.00:2
chr15	48460927	rs8023906	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,124:32:124:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,105:31:105:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,93:32:94:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,131:32:131:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,134:32:134:1.00:2
chr15	48495508	rs1320052	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:32:69:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,77:31:77:1.00:2	0/1:0,48:31:48:1.00:2	0/1:2,64:32:66:0.970:2	0/1:0,66:31:66:1.00:2	0/1:0,100:32:100:1.00:2	0/1:1,55:32:56:0.982:2	0/1:0,95:32:95:1.00:2
chr15	48495706	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,6:31:87:0.069:2	./.
chr15	48513145	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.	./.	./.
chr15	48527175	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,24:31:73:0.329:2	./.	./.	./.	./.	./.
chr15	48539587	rs6493311	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,32:29:32:1.00:2	0/1:0,11:28:11:1.00:2	./.	./.	./.	./.	./.	./.	0/1:20,11:31:31:0.355:2	./.	./.
chr15	48580713	rs1552311	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:28:26:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,58:29:58:1.00:2	0/1:0,37:29:37:1.00:2	0/1:0,34:29:34:1.00:2	0/1:2,26:30:28:0.929:2	0/1:0,42:29:42:1.00:2	0/1:0,58:30:58:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,68:29:68:1.00:2
chr15	48624469	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,6:19:20:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	48713782	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:31:50:0.080:2
chr15	48714182	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:31:106:0.038:2	./.
chr15	48719788	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,4:32:74:0.054:2	./.	./.	./.	./.	./.	./.	./.
chr15	48779349	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,4:31:89:0.045:2	./.	./.	./.	./.	./.	./.	./.
chr15	48797307	rs25458	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,46:29:107:0.430:2	./.	./.	0/1:37,36:30:73:0.493:2	./.
chr15	48807637	rs4775765	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:31:64:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,68:30:68:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,83:30:83:1.00:2	0/1:0,93:30:93:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,70:31:70:1.00:2
chr15	49054674	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:36:192:0.021:2	./.	./.	./.	./.	./.
chr15	49085593	rs192488288	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,44:32:92:0.478:2	./.	./.	./.	./.
chr15	49097847	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,5:28:113:0.044:2	./.	./.	./.	./.	./.	./.	./.
chr15	49127134	rs1426199	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,52:30:104:0.510:2	0/1:52,48:30:100:0.480:2	./.	./.	./.	./.
chr15	49171557	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:198:0.020:2
chr15	49172317	rs10519197	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,84:32:197:0.426:2	0/1:0,187:33:187:1.00:2	./.	./.
chr15	49285001	rs34895054	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:82,77:30:159:0.484:2	0/1:41,40:29:81:0.494:2	./.	./.	0/1:74,53:30:127:0.417:2	./.	0/1:72,57:30:129:0.442:2	0/1:81,98:29:179:0.547:2	0/1:88,77:30:167:0.467:2	0/1:77,73:29:150:0.487:2	./.
chr15	49288649	rs185108730	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,48:33:121:0.397:2	./.	./.	./.	./.
chr15	49293194	rs11854184	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:96,65:32:161:0.404:2	0/1:44,37:33:81:0.457:2	./.	./.	0/1:66,43:31:109:0.394:2	0/1:108,71:31:179:0.397:2	./.	./.	./.	0/1:81,59:32:140:0.421:2	./.
chr15	49320389	rs75595801	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,32:32:52:0.615:2
chr15	49325289	rs11638215	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,40:31:40:1.00:2	0/1:0,28:32:28:1.00:2	./.	./.	0/1:0,53:32:53:1.00:2	0/1:1,58:32:59:0.983:2	0/1:20,8:32:28:0.286:2	0/1:0,36:32:36:1.00:2	0/1:22,40:32:62:0.645:2	0/1:0,26:31:26:1.00:2	0/1:25,31:32:56:0.554:2
chr15	49429410	rs17473148	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:4,10:33:14:0.714:2	0/1:5,3:32:8:0.375:2	./.	./.	0/1:8,6:34:14:0.429:2	./.	0/1:4,3:34:7:0.429:2	0/1:8,7:31:15:0.467:2	0/1:0,16:33:16:1.00:2	0/1:7,10:33:17:0.588:2	./.
chr15	49620200	rs1055254	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:17,20:31:37:0.541:2	0/1:22,13:31:35:0.371:2	./.	./.	0/1:26,31:30:57:0.544:2	./.	0/1:24,24:31:48:0.500:2	0/1:29,31:30:60:0.517:2	0/1:0,60:31:60:1.00:2	0/1:28,28:31:56:0.500:2	./.
chr15	49867289	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:31:44:0.091:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	49917418	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,3:31:37:0.081:2	./.	./.	./.	./.	./.
chr15	49917573	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:31:160:0.025:2	./.
chr15	49917583	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:31:143:0.028:2	./.
chr15	49917584	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:31:144:0.028:2	./.
chr15	49917618	rs142654959	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,46:30:86:0.535:2	./.	./.	./.	./.	./.	./.
chr15	50152583	rs4774549	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:30:63:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,92:31:92:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,72:30:72:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,90:31:90:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,89:31:90:1.00:2
chr15	50212484	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:33:185:0.022:2	./.	./.
chr15	50226313	rs2452524	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:31:5:0.600:2	0/1:0,54:32:54:1.00:2	0/1:2,31:32:33:0.939:2	0/1:0,69:31:69:1.00:2	0/1:26,19:33:45:0.422:2	0/1:44,42:32:86:0.488:2	0/1:0,91:33:91:1.00:2	0/1:39,35:32:74:0.473:2	0/1:47,36:32:83:0.434:2
chr15	50264888	rs180735446	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,29:29:75:0.387:2	./.	./.	./.	./.	./.	./.
chr15	50279662	rs16963151	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:32:11:0.455:2	./.	./.	./.	0/1:33,24:33:57:0.421:2	./.	./.	./.	./.
chr15	50336844	rs201949459	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,21:33:37:0.568:2	./.	./.	./.	./.
chr15	50474766	rs1648348	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:33:5:0.800:2	0/1:18,6:32:24:0.250:2	./.	0/1:22,18:32:40:0.450:2	0/1:2,21:33:23:0.913:2	0/1:23,15:33:38:0.395:2	./.	0/1:0,19:32:19:1.00:2	0/1:19,14:32:33:0.424:2
chr15	50474900	rs34490804	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,15:32:24:0.625:2	./.	./.
chr15	50534514	rs2073440	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,19:31:47:0.404:2	./.	./.	./.	0/1:16,29:33:45:0.644:2	./.	./.
chr15	50534832	rs1549521	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,27:29:62:0.435:2	./.	./.	./.	0/1:23,36:30:59:0.610:2	./.	./.
chr15	50544871	rs34406040	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,36:31:76:0.474:2	./.	./.	./.	0/1:33,14:33:47:0.298:2	./.	./.
chr15	50593003	rs141883945	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,20:32:49:0.408:2	./.
chr15	50757285	rs147742292	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,73:34:172:0.424:2
chr15	50763945	rs61751062	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,37:31:84:0.440:2
chr15	50769520	rs61733869	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,32:30:80:0.400:2	./.	./.
chr15	50773755	rs3131561	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,83:32:83:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,85:31:85:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,105:32:105:1.00:2
chr15	50776525	rs10220843	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,18:32:40:0.450:2	./.	0/1:19,14:32:33:0.424:2	./.	0/1:18,16:34:34:0.471:2	./.
chr15	50782703	rs11638390	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:34:12:0.417:2	0/1:2,8:32:10:0.800:2	./.	0/1:7,4:33:11:0.364:2	./.	./.	./.	0/1:6,12:33:18:0.667:2
chr15	50867082	rs473357	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,19:31:39:0.487:2	0/1:26,11:31:37:0.297:2	./.	0/1:1,41:31:42:0.976:2	0/1:2,25:29:27:0.926:2	0/1:0,30:29:30:1.00:2	0/1:16,20:30:36:0.556:2	0/1:17,16:31:33:0.485:2	./.	0/1:0,33:30:33:1.00:2	0/1:45,29:31:74:0.392:2
chr15	50867095	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:34:73:0.055:2	./.	./.
chr15	50867142	rs16963774	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,25:29:75:0.333:2	./.	0/1:29,27:32:56:0.482:2	./.	0/1:43,21:32:64:0.328:2	./.
chr15	50878672	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,3:31:20:0.150:2	./.	./.	./.	./.
chr15	50886703	rs188264485	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,28:32:49:0.571:2	./.	./.	./.
chr15	50888554	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:124,4:33:128:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr15	50897205	rs55681028	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,52:31:112:0.464:2	./.	./.	./.	./.	./.	./.	./.
chr15	50899447	rs35648842	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:32:7:0.857:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	50902008	rs147383070	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:174,4:31:178:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr15	50941064	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:33:42:0.095:2	./.	./.	./.	./.
chr15	51012256	rs140685887	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,54:33:111:0.486:2	./.	./.
chr15	51017488	rs140457962	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,63:31:140:0.450:2	./.	./.	./.	./.	./.	./.	./.
chr15	51039739	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,5:33:173:0.029:2	./.	./.
chr15	51040384	rs61751063	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,30:32:70:0.429:2	0/1:22,16:30:38:0.421:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	51217361	rs2306331	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,27:30:70:0.386:2	0/1:18,22:27:40:0.550:2	0/1:8,8:30:16:0.500:2	0/1:1,56:30:57:0.982:2	0/1:43,23:30:66:0.348:2	0/1:32,45:29:77:0.584:2	0/1:1,38:30:39:0.974:2	./.	0/1:42,26:29:68:0.382:2	./.	0/1:63,34:29:97:0.351:2
chr15	51240316	rs148817957	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,19:33:42:0.452:2
chr15	51294832	rs3825798	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,49:32:108:0.454:2	0/1:35,34:31:69:0.493:2	0/1:11,10:31:21:0.476:2	0/1:56,61:31:117:0.521:2	0/1:49,38:31:87:0.437:2	./.	0/1:43,61:31:104:0.587:2	./.	./.	./.	0/1:70,67:32:137:0.489:2
chr15	51350287	rs78897873	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,43:33:106:0.406:2	./.	./.	./.	./.	./.	./.
chr15	51507426	rs181766689	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,45:31:76:0.592:2	./.	./.	./.	./.	./.	./.
chr15	51529112	rs700518	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,39:30:66:0.591:2	0/1:17,12:30:29:0.414:2	0/1:0,4:31:4:1.00:2	0/1:1,67:31:68:0.985:2	0/1:29,41:30:70:0.586:2	./.	0/1:0,70:31:70:1.00:2	./.	0/1:0,63:31:63:1.00:2	0/1:2,61:31:63:0.968:2	0/1:39,34:31:73:0.466:2
chr15	51669625	rs17602686	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,27:32:60:0.450:2	0/1:39,36:33:75:0.480:2	./.	./.	./.	./.
chr15	51669704	rs76233942	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,10:30:24:0.417:2	0/1:10,7:27:17:0.412:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	51675625	rs2445738	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,43:33:43:1.00:2	0/1:0,20:32:20:1.00:2	./.	./.	0/1:0,12:33:12:1.00:2	./.	./.	0/1:41,16:33:57:0.281:2	0/1:33,24:34:57:0.421:2	0/1:21,24:33:45:0.533:2	0/1:49,25:33:74:0.338:2
chr15	51689772	rs17648128	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,25:32:41:0.625:2	0/1:27,13:31:40:0.325:2	0/1:5,5:30:10:0.500:2	0/1:34,36:30:70:0.514:2	./.	./.	0/1:23,19:32:42:0.452:2	0/1:95,4:31:99:0.040:2	./.	./.	0/1:30,15:31:45:0.333:2
chr15	51743826	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,3:34:74:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr15	51748564	rs76659258	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,25:32:59:0.424:2	./.	./.	./.
chr15	51766637	rs371331405	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,6:28:48:0.125:2	./.	./.	0/1:29,8:26:37:0.216:2	0/1:35,12:25:47:0.255:2	0/1:51,9:26:60:0.150:2	0/1:34,10:26:44:0.227:2	0/1:50,6:26:56:0.107:2	0/1:42,6:25:48:0.125:2	0/1:40,7:24:47:0.149:2	0/1:73,10:26:83:0.120:2
chr15	51772302	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:110,4:32:114:0.035:2	./.	./.	./.	./.	./.	./.
chr15	51783820	rs10851500	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:27,17:32:44:0.386:2	0/1:10,5:32:15:0.333:2	./.	0/1:21,11:31:32:0.344:2	./.	./.	0/1:27,10:32:37:0.270:2	./.	./.	0/1:17,18:32:35:0.514:2	0/1:21,18:31:39:0.462:2
chr15	51787310	rs372546062	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:133,4:33:137:0.029:2	./.	./.	./.	./.	./.	./.
chr15	51791243	rs146128315	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,40:32:67:0.597:2	./.
chr15	51791559	rs12102203	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,53:32:112:0.473:2	0/1:40,33:32:73:0.452:2	0/1:0,13:30:13:1.00:2	0/1:47,65:33:112:0.580:2	./.	./.	0/1:70,69:32:139:0.496:2	./.	./.	0/1:30,46:33:76:0.605:2	0/1:60,82:33:142:0.577:2
chr15	51795172	rs12592889	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,17:31:42:0.405:2	0/1:15,10:32:25:0.400:2	0/1:0,5:31:5:1.00:2	0/1:22,23:32:45:0.511:2	./.	./.	0/1:14,19:31:33:0.576:2	./.	./.	0/1:22,23:32:45:0.511:2	0/1:28,17:32:45:0.378:2
chr15	51828622	rs141558477	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,33:30:79:0.418:2
chr15	51829812	rs17524906	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:50,73:32:123:0.593:2	0/1:37,28:32:65:0.431:2	./.	0/1:80,78:31:158:0.494:2	0/1:48,49:32:97:0.505:2	0/1:86,69:32:155:0.445:2	./.	0/1:105,82:32:187:0.439:2	0/1:5,119:33:124:0.960:2	./.	./.
chr15	51868373	rs2414105	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,4:31:6:0.667:2	0/1:0,2:33:2:1.00:2	0/1:6,5:30:11:0.455:2	./.	./.	./.	./.	./.	0/1:3,5:32:8:0.625:2	0/1:1,5:32:6:0.833:2
chr15	51914662	rs2278990	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,21:31:60:0.350:2	0/1:20,7:30:27:0.259:2	0/1:0,17:31:17:1.00:2	0/1:61,49:32:110:0.445:2	./.	./.	0/1:60,34:31:94:0.362:2	./.	./.	0/1:32,35:31:67:0.522:2	0/1:34,32:31:66:0.485:2
chr15	51914716	rs2278989	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,41:32:91:0.451:2	0/1:23,19:32:42:0.452:2	0/1:0,20:31:20:1.00:2	0/1:77,58:33:135:0.430:2	./.	./.	0/1:92,59:33:151:0.391:2	./.	./.	0/1:41,59:31:100:0.590:2	0/1:56,39:31:96:0.411:2
chr15	52060470	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,4:32:30:0.133:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	52066032	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:31:146:0.027:2	./.	./.	./.	./.
chr15	52186062	rs143809392	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,26:34:53:0.491:2	./.	./.
chr15	52245403	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:32:131:0.031:2
chr15	52339143	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:33:124:0.032:2	./.	./.	./.	./.
chr15	52339147	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:31:126:0.032:2	./.	./.	./.	./.
chr15	52339174	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:30:108:0.037:2	./.	./.	./.	./.
chr15	52353498	rs17853426	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,40:32:88:0.455:2	./.	./.	0/1:89,63:33:152:0.414:2	0/1:88,75:34:163:0.460:2	0/1:61,49:33:110:0.445:2	./.
chr15	52356247	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:31:110:0.036:2	./.	./.	./.
chr15	52356345	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:33:58:0.069:2	./.
chr15	52356597	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,4:32:86:0.047:2	./.	./.	./.	./.	./.	./.
chr15	52404862	rs2231292	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	52433397	rs17612637	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,14:31:20:0.700:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	52442088	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:34:90:0.044:2	./.	./.	./.
chr15	52446260	rs35581121	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:31:5:0.800:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	52488607	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:166,4:32:171:0.024:2	./.	./.	./.	./.	./.	./.
chr15	52497147	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:31:108:0.037:2	./.
chr15	52517714	rs3825801	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:78,61:33:139:0.439:2	0/1:32,33:32:65:0.508:2	./.	./.	0/1:43,44:32:87:0.506:2	./.	./.	./.	./.	./.	./.
chr15	52529689	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:119,4:31:123:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr15	52531941	rs11635028	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:33:59:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,17:31:17:1.00:2	0/1:3,61:32:64:0.953:2	0/1:29,16:33:45:0.356:2	0/1:0,48:32:48:1.00:2	0/1:0,52:33:52:1.00:2	0/1:1,59:32:60:0.983:2	0/1:0,77:34:78:1.00:2	0/1:0,32:32:32:1.00:2	0/1:45,32:33:77:0.416:2
chr15	52534344	rs3751631	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:76,54:31:130:0.415:2	0/1:50,40:30:90:0.444:2	0/1:0,28:31:28:1.00:2	0/1:2,156:31:158:0.987:2	./.	0/1:2,159:31:161:0.988:2	0/1:5,158:31:163:0.969:2	0/1:3,186:31:189:0.984:2	0/1:1,139:31:140:0.993:2	0/1:1,141:31:142:0.993:2	0/1:99,86:32:185:0.465:2
chr15	52539673	rs10163109	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:31:82:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,10:31:10:1.00:2	0/1:1,121:31:122:0.992:2	0/1:0,75:30:75:1.00:2	0/1:0,120:30:120:1.00:2	0/1:0,106:31:106:1.00:2	0/1:0,158:31:158:1.00:2	0/1:0,128:32:128:1.00:2	0/1:0,77:31:77:1.00:2	0/1:0,133:31:133:1.00:2
chr15	52543633	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:33:115:0.035:2	./.	./.	./.
chr15	52545602	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:35:74:0.054:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	52553156	rs200250841	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:32:48:0.083:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	52556429	rs4776032	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:29:31:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,72:30:72:1.00:2	0/1:0,74:30:74:1.00:2	0/1:0,67:31:67:1.00:2	0/1:5,107:29:112:0.955:2	0/1:0,67:31:67:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,62:30:62:1.00:2
chr15	52563990	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:33:81:0.049:2	./.	./.	./.
chr15	52609330	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:32:118:0.034:2	./.	./.	./.	./.
chr15	52611451	rs2290332	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,89:30:186:0.478:2	0/1:95,92:30:187:0.492:2	./.	./.	./.	./.	./.	./.
chr15	52643564	rs1058219	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,17:33:17:1.00:2	./.	./.	./.	./.	0/1:3,158:32:161:0.981:2	./.	0/1:48,47:33:95:0.495:2	./.
chr15	52664408	rs11637651	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,70:32:70:1.00:2
chr15	52667552	rs2414145	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,97:32:97:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,146:32:146:1.00:2	0/1:0,123:32:123:1.00:2	0/1:0,126:31:126:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,146:32:146:1.00:2	0/1:0,155:33:155:1.00:2	0/1:0,97:32:97:1.00:2	0/1:1,163:32:164:0.994:2
chr15	52671854	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,82:33:186:0.443:2	./.	./.	./.	./.	./.
chr15	52675350	rs373560629	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:31:97:0.041:2	./.	./.	./.	./.	./.
chr15	52689526	rs2924130	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,165:30:165:1.00:2	0/1:0,92:30:92:1.00:2	0/1:0,30:30:30:1.00:2	0/1:3,186:30:189:0.984:2	0/1:1,194:30:195:0.995:2	0/1:0,190:30:190:1.00:2	0/1:0,189:31:189:1.00:2	0/1:1,187:30:188:0.995:2	0/1:0,181:31:182:1.00:2	0/1:0,173:30:173:1.00:2	0/1:2,189:30:191:0.990:2
chr15	52689631	rs1724577	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,123:32:124:0.992:2	0/1:0,82:31:82:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,139:32:139:1.00:2	0/1:0,118:31:118:1.00:2	0/1:0,142:32:142:1.00:2	0/1:1,155:32:156:0.994:2	./.	0/1:0,122:32:122:1.00:2	0/1:0,97:31:97:1.00:2	0/1:0,145:32:145:1.00:2
chr15	52901283	rs61731670	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,11:33:42:0.262:2	./.	0/1:28,15:31:43:0.349:2	./.
chr15	52901284	rs58018557	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,11:29:42:0.262:2	./.	0/1:29,14:30:43:0.326:2	./.
chr15	52901433	rs12915981	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:1,32:31:33:0.970:2	0/1:0,2:30:2:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,23:30:23:1.00:2	0/1:4,30:31:34:0.882:2	0/1:27,19:31:46:0.413:2	0/1:0,41:32:41:1.00:2	0/1:20,19:32:39:0.487:2	0/1:0,62:32:62:1.00:2
chr15	52901638	rs3751614	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:32:42:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,3:34:3:1.00:2	0/1:0,57:33:57:1.00:2	0/1:1,52:32:53:0.981:2	0/1:1,54:32:55:0.982:2	0/1:1,43:33:44:0.977:2	0/1:29,35:33:64:0.547:2	0/1:0,60:34:60:1.00:2	0/1:16,26:32:42:0.619:2	0/1:0,59:33:59:1.00:2
chr15	52901977	rs2414166	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,26:32:26:1.00:2	0/1:0,14:32:14:1.00:2	./.	0/1:0,27:32:27:1.00:2	0/1:1,32:31:33:0.970:2	0/1:0,29:31:29:1.00:2	0/1:0,26:33:26:1.00:2	0/1:36,13:33:49:0.265:2	0/1:0,25:33:26:1.00:2	0/1:8,29:32:37:0.784:2	0/1:0,24:33:24:1.00:2
chr15	52902330	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,85:33:199:0.427:2	./.	./.	./.	./.	./.	./.	./.
chr15	53081859	rs74805019	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,22:27:46:0.478:2	./.	./.	./.	./.	./.
chr15	53809958	rs17630660	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,34:32:76:0.447:2	0/1:21,18:33:39:0.462:2	./.	./.	./.	0/1:48,41:32:89:0.461:2	./.	./.	./.	./.	./.
chr15	53907679	rs16966318	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,45:33:91:0.495:2
chr15	53907906	rs16966320	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,19:32:28:0.679:2
chr15	53907948	rs17730281	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,9:32:26:0.346:2	./.	./.	./.	0/1:17,13:31:30:0.433:2	./.	0/1:15,14:31:29:0.483:2	0/1:30,22:32:52:0.423:2
chr15	53908062	rs60404950	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,60:33:132:0.455:2
chr15	53908135	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,19:29:38:0.500:2	./.	./.	./.	./.
chr15	53994493	rs6416452	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,40:32:66:0.606:2	0/1:26,12:31:38:0.316:2	./.	0/1:30,19:32:49:0.388:2	0/1:0,55:32:55:1.00:2	0/1:24,26:32:50:0.520:2	0/1:35,25:32:60:0.417:2	./.	0/1:42,24:33:66:0.364:2	0/1:0,51:32:51:1.00:2	0/1:1,62:31:63:0.984:2
chr15	54003066	rs12905755	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,24:31:45:0.533:2	0/1:7,10:32:17:0.588:2	./.	./.	./.	0/1:40,20:31:60:0.333:2	./.	./.	./.	./.	./.
chr15	54003091	rs551225	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,15:33:38:0.395:2	0/1:15,8:33:23:0.348:2	0/1:0,9:32:9:1.00:2	0/1:40,11:33:51:0.216:2	./.	0/1:17,37:32:54:0.685:2	0/1:35,23:33:58:0.397:2	0/1:3,55:32:58:0.948:2	0/1:35,35:33:70:0.500:2	./.	./.
chr15	54008795	rs690337	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,51:31:100:0.510:2	0/1:27,20:31:47:0.426:2	0/1:0,12:31:12:1.00:2	0/1:0,99:31:99:1.00:2	./.	0/1:74,48:31:123:0.393:2	0/1:61,49:31:110:0.445:2	0/1:3,127:31:130:0.977:2	0/1:55,61:31:116:0.526:2	0/1:0,79:31:79:1.00:2	0/1:3,101:31:104:0.971:2
chr15	54008845	rs690346	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,112:30:112:1.00:2	0/1:0,61:29:61:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,120:30:120:1.00:2	0/1:0,155:29:155:1.00:2	0/1:0,150:29:150:1.00:2	0/1:2,148:29:150:0.987:2	0/1:0,148:30:148:1.00:2	0/1:0,129:30:129:1.00:2	0/1:0,124:30:124:1.00:2	0/1:0,137:30:137:1.00:2
chr15	54305403	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:28:64:0.063:2
chr15	54306925	rs12437941	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:32:71:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,85:31:85:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,81:31:81:1.00:2	0/1:0,62:31:62:1.00:2	0/1:1,77:31:78:0.987:2	0/1:0,83:31:83:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,90:32:90:1.00:2
chr15	54435833	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:32:93:0.043:2
chr15	54542456	rs34909598	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,28:31:76:0.368:2	./.	./.	./.	./.	./.	./.
chr15	54557674	rs117887090	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,28:32:66:0.424:2	./.	./.	./.
chr15	54586163	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:33:145:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	54624313	rs11856987	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:16,11:33:27:0.407:2	0/1:9,6:34:15:0.400:2	./.	0/1:24,14:33:38:0.368:2	./.	./.	0/1:7,6:30:13:0.462:2	0/1:19,7:33:26:0.269:2	./.	0/1:10,12:33:22:0.545:2	./.
chr15	54839017	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,5:34:177:0.028:2	./.	./.
chr15	54841874	rs9302181	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:10,22:33:32:0.688:2	0/1:16,8:33:24:0.333:2	./.	0/1:15,8:33:23:0.348:2	./.	./.	0/1:10,7:32:17:0.412:2	./.	./.	0/1:8,5:32:13:0.385:2	0/1:0,50:33:50:1.00:2
chr15	54847677	rs11639005	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:31,26:32:57:0.456:2	0/1:16,17:30:33:0.515:2	./.	0/1:64,33:31:97:0.340:2	./.	./.	0/1:36,24:32:60:0.400:2	./.	./.	0/1:41,38:32:79:0.481:2	0/1:30,43:31:73:0.589:2
chr15	54919047	rs1520411	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,41:32:42:0.976:2	0/1:11,16:32:27:0.593:2	0/1:14,6:33:20:0.300:2	0/1:7,6:32:13:0.462:2	./.	./.	0/1:0,43:31:43:1.00:2	0/1:31,24:32:55:0.436:2
chr15	55489065	rs9300	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:25,29:32:54:0.537:2	0/1:27,11:32:38:0.289:2	./.	0/1:67,33:31:100:0.330:2	./.	./.	0/1:2,77:31:79:0.975:2	0/1:63,51:31:114:0.447:2	./.	./.	./.
chr15	55619796	rs2290344	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,44:29:82:0.537:2	./.	./.	./.	0/1:43,22:29:66:0.338:2	./.
chr15	55632859	rs678892	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,70:32:151:0.464:2	0/1:41,30:32:71:0.423:2	./.	./.	./.	0/1:0,133:31:133:1.00:2	0/1:71,53:32:124:0.427:2	0/1:94,62:32:156:0.397:2	0/1:94,77:32:171:0.450:2	0/1:76,51:32:127:0.402:2	./.
chr15	55643010	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:31:71:0.056:2	./.	./.	./.	./.
chr15	55647492	rs8043415	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,21:31:46:0.457:2	./.	./.	./.	./.
chr15	55653031	rs501231	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:33:7:1.00:2	0/1:45,54:33:99:0.545:2	0/1:35,18:32:53:0.340:2	0/1:43,39:32:82:0.476:2	0/1:31,28:32:59:0.475:2	./.	0/1:0,101:33:101:1.00:2	./.	0/1:1,136:33:137:0.993:2
chr15	55664110	rs117236526	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:32:12:0.417:2	./.	./.	./.	0/1:44,41:31:85:0.482:2	./.	./.	./.	./.
chr15	55664220	rs3203152	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.	./.	0/1:16,16:32:32:0.500:2	./.	./.	./.	./.
chr15	55681641	rs74970525	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,65:31:167:0.389:2	./.	0/1:78,62:29:140:0.443:2	./.	./.	0/1:88,64:32:152:0.421:2	./.	./.
chr15	55722872	rs77641439	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,16:32:37:0.432:2	./.	0/1:30,27:33:57:0.474:2	./.	./.	0/1:22,19:32:41:0.463:2	./.	./.
chr15	55722882	rs57809907	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	./.	0/1:26,12:31:38:0.316:2	./.	./.	./.	./.
chr15	55759193	rs600753	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,15:32:15:1.00:2	0/1:0,16:32:16:1.00:2	./.	0/1:15,13:33:28:0.464:2	0/1:1,38:32:39:0.974:2	0/1:12,19:32:31:0.613:2	0/1:9,16:33:25:0.640:2	0/1:0,22:33:22:1.00:2	./.	0/1:0,18:32:18:1.00:2	./.
chr15	55789910	rs17819126	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:12,4:34:16:0.250:2	0/1:6,6:32:12:0.500:2	./.	./.	./.	./.	./.	0/1:20,13:31:33:0.394:2	./.	./.	./.
chr15	55838506	rs11858599	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,96:33:198:0.485:2	0/1:103,85:31:188:0.452:2	./.
chr15	55838585	rs11858624	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,86:33:195:0.441:2	0/1:95,95:32:190:0.500:2	./.
chr15	55912875	rs1438914	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,40:32:103:0.388:2	0/1:24,15:31:39:0.385:2	./.	./.	./.	./.	./.	./.	0/1:57,20:32:77:0.260:2	0/1:41,21:32:62:0.339:2	./.
chr15	55929382	rs78678927	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,8:14:44:0.182:2	0/1:34,7:16:41:0.171:2	./.	./.	./.	./.
chr15	55964693	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:32:170:0.024:2	./.	./.	./.	./.	./.
chr15	56032872	rs77118243	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,16:31:38:0.421:2	0/1:15,18:31:33:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	56122741	rs17238461	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,51:30:99:0.515:2	./.	./.	./.	./.	./.
chr15	56139153	rs2288346	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,48:33:85:0.571:2	0/1:24,27:32:51:0.529:2	0/1:0,8:32:8:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,115:33:115:1.00:2	0/1:0,63:32:63:1.00:2	0/1:1,122:32:124:0.992:2
chr15	56140640	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,20:32:30:0.667:2	./.	./.	./.	./.
chr15	56140995	rs12232351	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,44:32:108:0.407:2	0/1:39,35:32:74:0.473:2	0/1:0,14:31:14:1.00:2	0/1:67,48:32:115:0.417:2	0/1:40,45:31:85:0.529:2	0/1:59,54:31:113:0.478:2	./.	./.	0/1:45,52:32:97:0.536:2	./.	0/1:67,54:32:121:0.446:2
chr15	56152729	rs2303579	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,43:32:77:0.558:2	0/1:17,16:33:33:0.485:2	0/1:0,4:33:4:1.00:2	0/1:29,29:32:58:0.500:2	0/1:0,61:32:61:1.00:2	0/1:0,53:32:53:1.00:2	0/1:1,53:33:54:0.981:2	0/1:33,28:33:61:0.459:2	0/1:53,32:33:85:0.376:2	0/1:28,13:32:41:0.317:2	0/1:1,69:32:70:0.986:2
chr15	56152872	rs2303580	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,64:32:135:0.474:2	0/1:37,38:32:75:0.507:2	0/1:0,12:31:12:1.00:2	0/1:58,64:31:122:0.525:2	0/1:2,57:32:59:0.966:2	0/1:0,125:31:125:1.00:2	0/1:0,94:31:94:1.00:2	0/1:66,66:32:132:0.500:2	0/1:88,77:33:165:0.467:2	0/1:62,43:31:105:0.410:2	0/1:2,126:31:128:0.984:2
chr15	56155232	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,4:30:81:0.049:2	./.	./.	./.	./.	./.	./.
chr15	56207811	rs62043855	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,90:33:190:0.474:2	./.	./.	./.	0/1:96,97:33:193:0.503:2	0/1:90,99:34:189:0.524:2	0/1:72,78:33:150:0.520:2	./.
chr15	56207983	rs7174459	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,15:30:30:0.500:2	0/1:8,8:31:16:0.500:2	./.	./.	0/1:20,13:31:33:0.394:2	0/1:17,7:31:24:0.292:2	0/1:7,17:31:24:0.708:2	0/1:17,10:31:27:0.370:2	./.	0/1:16,5:32:21:0.238:2	./.
chr15	56208463	rs113176671	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,30:33:105:0.288:2	./.	./.	./.	0/1:62,55:33:117:0.470:2
chr15	56208535	rs12440230	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,98:32:200:0.490:2	./.	./.	./.	0/1:119,79:32:198:0.399:2	0/1:93,104:33:197:0.528:2	0/1:84,83:32:168:0.497:2	./.
chr15	56208933	rs1912403	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,66:29:137:0.482:2	./.	0/1:76,55:30:131:0.420:2	0/1:61,77:29:138:0.558:2	./.	0/1:51,43:29:94:0.457:2	./.
chr15	56243766	rs61732704	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,37:32:72:0.514:2	0/1:12,9:31:21:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	56258659	rs67955420	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,39:32:67:0.582:2	./.	./.	./.	0/1:26,28:32:54:0.519:2	0/1:35,38:33:73:0.521:2	0/1:29,19:31:48:0.396:2	./.
chr15	56285695	rs74015355	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,10:33:25:0.417:2	./.	./.	./.	0/1:4,20:33:24:0.833:2	0/1:9,13:33:22:0.591:2	0/1:12,10:32:22:0.455:2	./.
chr15	56386577	rs7170589	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:33:61:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,95:33:95:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,111:33:111:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,114:33:114:1.00:2	0/1:0,112:33:112:1.00:2	0/1:0,75:33:75:1.00:2	0/1:0,81:33:81:1.00:2
chr15	56387142	rs34361729	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,20:29:48:0.417:2
chr15	56387352	rs117528481	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,46:33:107:0.430:2	./.	./.
chr15	56387859	rs3803459	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:27,13:32:40:0.325:2	0/1:112,72:33:184:0.391:2	./.	0/1:105,73:33:178:0.410:2	./.	./.	./.	0/1:99,66:34:165:0.400:2	./.
chr15	56387931	rs11071247	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:32:96:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,70:31:70:1.00:2	0/1:0,87:31:87:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,98:31:98:1.00:2	0/1:0,136:33:136:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,128:32:128:1.00:2
chr15	56388033	rs12439907	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,7:32:20:0.350:2	./.	0/1:13,10:32:23:0.435:2	./.	./.	./.	./.	./.
chr15	56388401	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,7:33:109:0.064:2	./.
chr15	56390280	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:34:74:0.054:2
chr15	56471449	rs11637789	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,42:32:74:0.568:2	./.	0/1:43,43:32:86:0.500:2	./.	./.	./.	0/1:42,38:33:80:0.475:2	./.
chr15	56676156	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:33:170:0.024:2	./.	./.	./.	0/1:190,4:33:194:0.021:2
chr15	56683478	rs112951968	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:74,4:31:78:0.051:2	./.	./.	./.	./.	./.	./.
chr15	56736681	rs35775595	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,54:33:118:0.458:2
chr15	56756285	rs1715919	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,4:31:16:0.250:2	0/1:53,69:32:122:0.566:2	./.	./.	./.	./.	./.	0/1:63,57:32:120:0.475:2	./.
chr15	56757159	rs369469105	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,9:32:21:0.429:2	0/1:7,3:32:10:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	56757188	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,10:13:30:0.333:2	./.
chr15	56923714	rs8043381	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,123:32:123:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,155:31:155:1.00:2	0/1:0,82:31:82:1.00:2	0/1:0,140:31:140:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,184:32:184:1.00:2	0/1:0,156:32:156:1.00:2	0/1:0,153:32:153:1.00:2	0/1:0,192:32:192:1.00:2
chr15	56959028	rs28620278	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,12:32:22:0.545:2	0/1:4,160:32:165:0.976:2	0/1:99,43:31:142:0.303:2	./.	0/1:74,44:31:118:0.373:2	0/1:97,77:31:174:0.443:2	./.	0/1:1,123:31:124:0.992:2	0/1:90,65:31:155:0.419:2
chr15	57384061	rs34560099	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,23:30:40:0.575:2	./.	./.	./.	./.	./.
chr15	57490034	rs17819994	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,33:32:72:0.458:2	./.	./.	./.	./.	./.	./.
chr15	57511788	rs200684049	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,5:31:134:0.037:2	./.	./.
chr15	57524982	rs12442879	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,89:32:177:0.503:2	./.	./.	./.	./.	./.	./.
chr15	57565369	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:31:92:0.043:2
chr15	57731335	rs1280395	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:32:43:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,56:33:56:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,57:32:57:1.00:2
chr15	57731573	rs7182648	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,41:31:41:1.00:2	./.	./.	./.	./.	./.
chr15	57731728	rs1280396	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:32:69:1.00:2	0/1:0,26:33:26:1.00:2	0/1:3,9:30:12:0.750:2	0/1:24,46:33:70:0.657:2	0/1:1,61:32:62:0.984:2	0/1:0,74:32:74:1.00:2	0/1:1,58:33:59:0.983:2	0/1:51,40:32:91:0.440:2	0/1:33,39:34:72:0.542:2	0/1:0,69:32:69:1.00:2	0/1:0,74:33:74:1.00:2
chr15	57835903	rs1620402	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,88:31:91:0.967:2	0/1:1,45:32:46:0.978:2	./.	./.	./.	0/1:0,143:32:143:1.00:2	./.	./.	./.	0/1:43,39:32:82:0.476:2	0/1:79,62:32:141:0.440:2
chr15	57839587	rs16977594	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,45:29:45:1.00:2	./.	0/1:25,31:29:56:0.554:2	./.	./.	./.
chr15	57910239	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,17:32:41:0.415:2	0/1:12,10:32:22:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	57910241	rs147173331	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,10:31:30:0.333:2	./.	./.	./.	./.
chr15	57918069	rs2069133	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,83:30:86:0.965:2	0/1:3,46:30:49:0.939:2	./.	0/1:74,54:30:128:0.422:2	0/1:0,138:30:138:1.00:2	./.	0/1:67,68:30:135:0.504:2	0/1:83,64:29:147:0.435:2	0/1:0,145:30:145:1.00:2	0/1:49,39:30:89:0.443:2	0/1:37,61:30:98:0.622:2
chr15	57918090	rs2958059	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:32:71:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,101:33:101:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,118:32:118:1.00:2	0/1:0,113:33:113:1.00:2	0/1:0,88:33:88:1.00:2	0/1:0,88:32:88:1.00:2
chr15	57925836	rs16977629	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,49:30:96:0.510:2	./.	./.	./.
chr15	57967219	rs1991252	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:30:53:1.00:2	0/1:0,36:28:36:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,64:29:64:1.00:2	0/1:0,37:29:37:1.00:2	0/1:0,69:29:69:1.00:2	0/1:0,55:29:55:1.00:2	0/1:0,61:28:61:1.00:2	0/1:0,83:30:83:1.00:2	0/1:0,57:29:57:1.00:2	0/1:0,92:29:92:1.00:2
chr15	57999129	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:188,4:32:192:0.021:2	./.	./.	./.	./.	./.	./.
chr15	58000981	rs1062707	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,41:32:79:0.519:2	0/1:29,18:32:47:0.383:2	0/1:3,4:31:7:0.571:2	0/1:0,69:32:69:1.00:2	0/1:29,22:31:51:0.431:2	0/1:2,64:31:66:0.970:2	0/1:23,26:32:49:0.531:2	0/1:33,28:31:61:0.459:2	0/1:42,38:32:80:0.475:2	0/1:21,22:31:43:0.512:2	0/1:50,33:30:84:0.398:2
chr15	58001174	.	A	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,4:31:84:0.048:2	./.	./.	0/1:118,7:32:126:0.056:2	0/1:121,7:32:128:0.055:2	0/1:92,8:32:100:0.080:2	./.
chr15	58004259	rs191581515	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,5:33:186:0.027:2	./.	./.	./.	0/1:153,4:32:158:0.025:2
chr15	58004337	.	C	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:175,7:32:182:0.038:2	0/1:162,9:30:171:0.053:2	0/1:23,5:32:28:0.179:2	0/1:182,6:32:188:0.032:2	0/1:174,9:33:183:0.049:2	0/1:178,10:32:188:0.053:2	0/1:175,12:33:187:0.064:2	0/1:176,15:33:191:0.079:2	0/1:182,6:29:188:0.032:2	0/1:181,9:33:190:0.047:2	0/1:172,5:34:178:0.028:2
chr15	58006777	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:128,5:30:133:0.038:2	./.	./.	./.	./.	./.	./.
chr15	58006779	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:127,4:33:131:0.031:2	./.	./.	./.	./.	./.	./.
chr15	58256127	rs4646626	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,45:32:45:1.00:2	0/1:1,37:32:38:0.974:2	./.	0/1:0,59:31:59:1.00:2	./.	./.	0/1:31,12:31:43:0.279:2	./.	./.	0/1:0,55:32:55:1.00:2	0/1:0,48:32:48:1.00:2
chr15	58471368	rs2249783	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:31:63:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,42:30:42:1.00:2	0/1:0,73:31:73:1.00:2	0/1:0,64:33:64:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,82:32:82:1.00:2
chr15	58476281	rs1867380	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,131:33:131:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,14:32:14:1.00:2	0/1:2,147:32:149:0.987:2	0/1:0,112:32:112:1.00:2	0/1:0,160:32:161:1.00:2	0/1:2,167:32:169:0.988:2	0/1:1,163:32:164:0.994:2	0/1:0,181:33:181:1.00:2	0/1:0,151:32:151:1.00:2	0/1:1,153:33:154:0.994:2
chr15	58833993	rs6078	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,7:32:22:0.318:2	./.
chr15	58834741	rs690	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:31:8:0.625:2	./.	0/1:76,49:30:125:0.392:2	0/1:62,31:31:93:0.333:2	0/1:71,67:30:138:0.486:2	0/1:68,59:30:127:0.465:2	0/1:1,106:32:107:0.991:2	0/1:44,43:31:87:0.494:2	0/1:0,83:31:83:1.00:2
chr15	58837957	rs6082	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,10:33:18:0.556:2	./.	./.	./.	./.	./.	./.	./.
chr15	58837989	rs200684324	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:34:55:0.073:2	./.	./.	./.	./.	./.
chr15	58838010	rs6083	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,25:33:50:0.500:2	0/1:18,6:32:24:0.250:2	0/1:6,7:32:13:0.538:2	0/1:12,17:33:29:0.586:2	0/1:12,32:32:44:0.727:2	0/1:35,23:33:58:0.397:2	0/1:12,28:33:40:0.700:2	0/1:0,49:32:49:1.00:2	0/1:17,36:33:53:0.679:2	0/1:8,28:32:36:0.778:2	./.
chr15	58838038	rs6084	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:30:46:1.00:2	0/1:0,27:30:27:1.00:2	0/1:10,6:32:16:0.375:2	0/1:20,16:30:36:0.444:2	0/1:36,12:29:48:0.250:2	0/1:26,33:29:59:0.559:2	0/1:24,9:30:33:0.273:2	./.	0/1:37,16:29:53:0.302:2	0/1:28,8:28:36:0.222:2	0/1:0,54:28:55:1.00:2
chr15	58853079	rs3829462	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:31:92:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,90:30:90:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,83:30:83:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,95:30:95:1.00:2	0/1:2,104:31:106:0.981:2	0/1:0,61:30:61:1.00:2	0/1:0,143:31:143:1.00:2
chr15	58853109	rs3829461	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,120:30:120:1.00:2	0/1:0,67:29:67:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,116:29:116:1.00:2	0/1:0,92:29:92:1.00:2	0/1:0,124:29:124:1.00:2	0/1:0,83:29:83:1.00:2	0/1:0,142:29:142:1.00:2	0/1:2,154:29:156:0.987:2	0/1:0,85:29:85:1.00:2	0/1:0,188:29:188:1.00:2
chr15	58860963	rs6074	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,38:32:61:0.623:2	./.
chr15	59063659	rs61729219	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,16:31:42:0.381:2	./.	./.	./.	./.
chr15	59064278	rs8029869	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,30:32:49:0.612:2	./.	./.	./.	./.
chr15	59094494	rs190973169	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,6:33:14:0.429:2	./.	./.	./.	0/1:7,7:31:16:0.500:2
chr15	59144027	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:32:132:0.030:2	./.	./.	./.	./.	./.
chr15	59144036	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:33:67:0.060:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	59175965	rs77145198	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,62:31:128:0.484:2	./.	0/1:51,42:32:93:0.452:2	./.	./.
chr15	59179264	rs2124203	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,29:30:76:0.382:2	./.	0/1:25,34:30:59:0.576:2	./.	./.
chr15	59180683	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,4:30:113:0.035:2	./.	./.	./.	./.	./.	./.
chr15	59190996	rs4398051	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,55:30:127:0.433:2	./.	./.	./.
chr15	59323048	rs2899642	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:36,38:33:74:0.514:2	0/1:37,23:32:60:0.383:2	0/1:1,9:31:10:0.900:2	./.	0/1:39,17:32:56:0.304:2	0/1:43,39:32:82:0.476:2	./.	0/1:0,55:32:55:1.00:2	./.	0/1:49,28:33:77:0.364:2	0/1:43,40:32:83:0.482:2
chr15	59347929	rs1446239	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,35:32:82:0.432:2	0/1:29,23:32:52:0.442:2	./.	0/1:2,117:32:119:0.983:2	0/1:51,45:31:96:0.469:2	./.	0/1:57,37:32:94:0.394:2	./.	0/1:0,110:32:110:1.00:2	0/1:45,47:32:92:0.511:2	0/1:54,57:32:111:0.514:2
chr15	59368167	rs7178935	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:13,18:30:31:0.581:2	0/1:17,9:31:26:0.346:2	./.	./.	0/1:18,25:30:43:0.581:2	./.	0/1:23,23:30:46:0.500:2	./.	0/1:0,39:31:39:1.00:2	0/1:30,20:31:50:0.400:2	./.
chr15	59453384	rs2306791	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,8:27:30:0.267:2	./.	0/1:16,13:28:29:0.448:2	0/1:36,21:31:57:0.368:2	./.	0/1:23,16:29:39:0.410:2
chr15	59499179	rs3809530	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,41:30:110:0.373:2	./.	./.	0/1:1,126:31:127:0.992:2	./.	./.	0/1:55,33:31:88:0.375:2	./.
chr15	59499228	rs3809529	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,35:32:84:0.417:2	0/1:70,71:31:141:0.504:2	0/1:42,55:32:97:0.567:2	0/1:0,108:32:108:1.00:2	0/1:50,63:32:113:0.558:2	./.	0/1:42,32:31:74:0.432:2	./.
chr15	59499274	rs3809528	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,48:30:95:0.505:2	0/1:50,67:29:117:0.573:2	0/1:33,58:31:91:0.637:2	0/1:1,99:30:100:0.990:2	0/1:59,64:30:124:0.520:2	./.	0/1:43,37:29:80:0.463:2	./.
chr15	59499472	rs61741295	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,65:32:130:0.500:2	./.	0/1:78,63:31:141:0.447:2
chr15	59499896	rs113430545	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:32:74:0.054:2	./.	./.	./.	./.
chr15	59500116	rs3825937	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,30:31:59:0.508:2	./.	./.	0/1:0,39:33:39:1.00:2	./.	./.	0/1:18,24:33:42:0.571:2	./.
chr15	59500117	rs61753957	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,36:33:81:0.444:2	./.	0/1:37,34:33:71:0.479:2
chr15	59500255	rs61740133	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,17:31:47:0.362:2	./.	0/1:22,19:32:41:0.463:2
chr15	59500346	rs76501863	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,5:33:20:0.250:2	./.	0/1:17,12:34:29:0.414:2
chr15	59500405	rs3825936	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,18:31:39:0.462:2	./.	0/1:18,18:32:36:0.500:2
chr15	59500543	rs61438122	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,44:32:100:0.444:2	./.	./.	0/1:87,62:33:149:0.416:2	./.	./.	./.
chr15	59500577	rs3816814	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,57:34:133:0.429:2	./.	0/1:77,73:32:150:0.487:2
chr15	59500930	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:34:154:0.026:2	./.	./.
chr15	59510189	rs2230155	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:47,45:33:92:0.489:2	0/1:47,28:31:75:0.373:2	./.	0/1:88,41:32:129:0.318:2	./.	0/1:0,97:32:97:1.00:2	0/1:74,55:32:129:0.426:2	./.	./.	0/1:45,32:31:77:0.416:2	./.
chr15	59515325	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,5:25:62:0.081:2	./.	./.
chr15	59519731	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:32:93:0.043:2	./.	./.
chr15	59784493	rs4296198	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,46:32:47:0.979:2	0/1:0,41:32:41:1.00:2	0/1:0,3:31:3:1.00:2	0/1:38,34:32:72:0.472:2	0/1:21,19:32:40:0.475:2	0/1:0,52:32:52:1.00:2	0/1:36,19:33:55:0.345:2	0/1:0,54:32:54:1.00:2	0/1:0,58:33:58:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,94:32:94:1.00:2
chr15	59911328	rs139760962	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:34:101:0.040:2
chr15	59911421	rs4775190	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,26:33:62:0.419:2	./.	./.	./.	./.
chr15	59911892	rs3743119	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:32:89:1.00:2	0/1:0,70:31:70:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,123:31:123:1.00:2	0/1:0,92:31:92:1.00:2	0/1:87,58:30:145:0.400:2	0/1:64,54:31:118:0.458:2	0/1:0,138:31:138:1.00:2	0/1:1,138:32:139:0.993:2	0/1:0,85:32:85:1.00:2	0/1:0,142:31:142:1.00:2
chr15	59911970	rs3743120	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,96:30:193:0.497:2	0/1:92,99:30:191:0.518:2	./.	./.	./.	./.
chr15	59912248	rs74019643	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,11:32:29:0.379:2	./.	./.	./.	./.	./.
chr15	59912253	rs7181069	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:33:38:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,32:32:32:1.00:2	0/1:11,17:32:28:0.607:2	0/1:10,13:33:23:0.565:2	0/1:0,30:33:30:1.00:2	0/1:2,50:34:52:0.962:2	0/1:0,34:32:34:1.00:2	0/1:0,54:33:54:1.00:2
chr15	59912332	rs80238883	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,6:31:15:0.400:2	./.	./.	./.	./.	./.
chr15	59912408	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,4:32:14:0.286:2	./.	./.
chr15	59912469	rs60806570	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:27:4:0.750:2	./.	./.	./.	./.
chr15	59912625	rs9806231	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:32:65:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,90:33:90:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,71:32:71:1.00:2
chr15	59963488	rs1135148	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,8:33:25:0.320:2	0/1:15,7:33:22:0.318:2	./.	./.	0/1:12,15:33:27:0.556:2	0/1:14,14:32:28:0.500:2	./.	0/1:0,27:33:27:1.00:2	0/1:0,29:31:29:1.00:2	0/1:11,20:33:31:0.645:2	0/1:39,24:32:63:0.381:2
chr15	59964904	rs1057058	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,91:30:186:0.489:2	./.	./.	0/1:118,55:31:173:0.318:2	./.	./.	./.	./.
chr15	59981515	rs3087328	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	./.
chr15	59981590	rs754641	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	0/1:0,4:33:4:1.00:2	0/1:2,7:31:9:0.778:2	./.	./.
chr15	60641320	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,4:31:113:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr15	60653205	rs17845226	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,83:32:179:0.464:2	./.	./.	./.	./.
chr15	60678298	rs11855679	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:31:11:1.00:2	0/1:60,45:31:105:0.429:2	0/1:56,36:31:92:0.391:2	0/1:49,53:31:102:0.520:2	0/1:3,84:32:87:0.966:2	0/1:0,96:31:96:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,111:31:111:1.00:2	0/1:0,87:32:87:1.00:2
chr15	60690089	rs12904657	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	0/1:4,3:25:7:0.429:2	0/1:0,2:32:2:1.00:2	./.	./.
chr15	60724118	rs12437617	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,38:30:68:0.559:2	0/1:29,18:28:47:0.383:2	0/1:2,3:30:5:0.600:2	0/1:44,26:29:70:0.371:2	./.	./.	0/1:22,20:29:42:0.476:2	0/1:25,21:29:46:0.457:2	0/1:0,81:30:81:1.00:2	0/1:0,54:29:54:1.00:2	0/1:0,77:29:77:1.00:2
chr15	60734697	rs1063100	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:103,79:30:182:0.434:2	0/1:83,73:29:156:0.468:2	0/1:25,30:29:55:0.545:2	0/1:95,85:30:180:0.472:2	./.	./.	0/1:104,76:30:180:0.422:2	0/1:103,81:30:184:0.440:2	0/1:93,82:31:175:0.469:2	0/1:3,172:30:175:0.983:2	0/1:0,170:30:170:1.00:2
chr15	60789798	rs11071539	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,132:33:132:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,136:32:136:1.00:2	0/1:0,134:32:134:1.00:2	0/1:0,142:32:142:1.00:2	0/1:0,113:32:114:1.00:2	0/1:1,123:32:124:0.992:2	0/1:0,129:33:129:1.00:2	0/1:1,133:32:134:0.993:2	0/1:0,117:32:117:1.00:2
chr15	60797731	rs16942645	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,54:32:136:0.397:2	./.	./.	./.	./.	./.
chr15	60803741	rs61740274	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,81:32:156:0.519:2	0/1:58,44:32:102:0.431:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	62165553	rs17303887	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,55:29:119:0.462:2	./.	./.	./.	0/1:86,80:30:166:0.482:2	0/1:114,66:29:180:0.367:2	0/1:92,75:29:167:0.449:2
chr15	62165577	rs17303894	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,43:32:91:0.473:2	./.	0/1:114,6:33:120:0.050:2	./.	0/1:67,51:34:118:0.432:2	0/1:88,53:33:141:0.376:2	0/1:76,53:32:129:0.411:2
chr15	62172907	rs12901055	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,10:33:29:0.345:2	./.	./.	./.	0/1:25,32:34:57:0.561:2	0/1:21,16:33:37:0.432:2	0/1:34,22:34:56:0.393:2
chr15	62174878	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,17:32:35:0.486:2	./.	./.	./.
chr15	62174894	rs17303915	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,13:31:33:0.394:2	./.	./.	./.	0/1:34,38:32:72:0.528:2	0/1:21,28:33:49:0.571:2	0/1:42,35:33:77:0.455:2
chr15	62199572	rs201446031	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,39:30:62:0.629:2	./.	./.	./.	./.	./.
chr15	62202482	rs10851704	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,26:32:26:1.00:2	0/1:0,17:32:17:1.00:2	./.	./.	0/1:11,10:31:21:0.476:2	0/1:24,21:31:45:0.467:2	0/1:17,18:31:35:0.514:2	0/1:27,13:31:40:0.325:2	0/1:19,24:32:43:0.558:2	0/1:0,39:32:39:1.00:2	0/1:0,31:31:31:1.00:2
chr15	62212770	rs139993005	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,31:29:63:0.492:2	./.	./.	./.	./.	./.	./.
chr15	62214607	rs12907567	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,11:31:28:0.393:2	./.	./.	./.	0/1:22,25:32:47:0.532:2	0/1:24,11:31:35:0.314:2	0/1:9,22:32:31:0.710:2
chr15	62219337	rs75341202	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,37:32:72:0.521:2	./.	./.	./.	./.
chr15	62228848	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,20:32:60:0.333:2	./.
chr15	62243197	rs11629598	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,33:32:65:0.508:2	./.	./.	./.	0/1:76,82:33:158:0.519:2	0/1:62,62:32:124:0.500:2	0/1:83,82:32:165:0.497:2
chr15	62253791	rs2303405	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,14:32:35:0.400:2	./.	./.	./.	0/1:25,19:32:44:0.432:2	0/1:12,17:33:29:0.586:2	0/1:27,21:32:48:0.438:2
chr15	62259637	rs3784634	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,28:33:28:1.00:2	0/1:0,27:31:27:1.00:2	0/1:30,18:31:48:0.375:2	0/1:9,8:32:17:0.471:2	0/1:25,24:32:49:0.490:2	0/1:0,36:33:36:1.00:2	0/1:29,21:32:50:0.420:2	0/1:46,23:33:69:0.333:2
chr15	62302757	rs114954486	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,6:32:188:0.032:2	./.
chr15	62306113	rs117696749	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,56:32:98:0.571:2	./.
chr15	62327242	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:34:82:0.049:2	./.	./.
chr15	62352537	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,6:33:61:0.098:2	./.
chr15	62359914	rs12911068	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,6:32:7:0.857:2	./.	0/1:3,5:33:8:0.625:2
chr15	62361288	rs7181462	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:28:45:1.00:2	0/1:0,25:28:25:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,32:28:32:1.00:2	0/1:0,36:28:36:1.00:2	0/1:0,47:28:47:1.00:2	0/1:0,45:28:45:1.00:2	0/1:0,41:29:42:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,36:28:36:1.00:2	0/1:0,71:29:71:1.00:2
chr15	62361756	rs35932993	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,3:29:9:0.333:2	./.	./.	./.	./.	./.	./.
chr15	62362050	rs1436961	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:3,82:32:85:0.965:2	0/1:1,59:33:60:0.983:2	0/1:1,10:32:11:0.909:2	./.	0/1:46,32:32:78:0.410:2	0/1:32,42:33:74:0.568:2	0/1:38,42:32:80:0.525:2	0/1:66,62:33:128:0.484:2	0/1:60,47:33:107:0.439:2	0/1:1,74:33:75:0.987:2	0/1:0,117:33:117:1.00:2
chr15	62362839	rs1534542	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,174:29:176:0.989:2	0/1:0,95:28:95:1.00:2	0/1:2,21:29:23:0.913:2	./.	0/1:79,80:29:159:0.503:2	0/1:80,117:28:197:0.594:2	0/1:91,57:29:148:0.385:2	0/1:89,111:29:200:0.555:2	0/1:111,84:30:195:0.431:2	0/1:0,197:29:198:1.00:2	0/1:0,193:29:193:1.00:2
chr15	62990971	rs12905981	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,10:32:33:0.303:2	./.	0/1:16,13:32:29:0.448:2	0/1:10,8:33:18:0.444:2	./.	0/1:5,11:32:16:0.688:2
chr15	63000736	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:31:150:0.027:2	./.	./.	./.	./.	./.
chr15	63009804	rs1320191	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,100:31:100:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,135:30:135:1.00:2	0/1:0,174:30:174:1.00:2	0/1:0,150:30:150:1.00:2	0/1:2,160:30:162:0.988:2	0/1:91,74:30:165:0.448:2	0/1:0,143:31:143:1.00:2	0/1:0,99:31:99:1.00:2	0/1:1,131:30:132:0.992:2
chr15	63009868	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:149,4:31:153:0.026:2	./.	./.	./.	./.	./.	./.
chr15	63042602	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:33:190:0.021:2
chr15	63047778	rs8033767	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:29:86:1.00:2	0/1:0,61:30:61:1.00:2	0/1:5,6:28:11:0.545:2	0/1:0,166:29:166:1.00:2	0/1:0,174:29:174:1.00:2	0/1:0,168:29:169:1.00:2	0/1:2,174:30:176:0.989:2	0/1:0,154:29:154:1.00:2	0/1:59,66:31:125:0.528:2	0/1:0,113:30:114:1.00:2	0/1:56,49:30:105:0.467:2
chr15	63047793	rs4775538	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:27:9:0.556:2	./.	./.	./.	./.	./.	0/1:63,49:32:112:0.438:2	./.	0/1:53,50:30:103:0.485:2
chr15	63053934	rs143603462	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,45:31:94:0.479:2	./.	./.	./.	./.	./.	./.
chr15	63111739	rs3816988	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,15:31:47:0.319:2	./.	0/1:28,37:32:65:0.569:2	0/1:22,39:33:61:0.639:2	./.	./.
chr15	63127983	rs8038919	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,68:31:153:0.444:2	./.	0/1:93,100:32:193:0.518:2	0/1:98,76:33:174:0.437:2	./.	./.
chr15	63131098	rs145762497	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:31:80:0.050:2	./.	./.	./.
chr15	63131117	rs937418	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,56:31:57:0.982:2	./.	0/1:26,35:31:61:0.574:2	0/1:21,32:32:53:0.604:2	./.	./.
chr15	63340842	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:34:3:0.667:2	./.	./.	./.	./.
chr15	63351840	rs1071646	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,54:32:54:1.00:2	0/1:0,10:32:10:1.00:2	./.	0/1:30,18:31:48:0.375:2	0/1:40,14:31:54:0.259:2	0/1:1,60:31:61:0.984:2	0/1:0,47:31:47:1.00:2	0/1:0,45:31:45:1.00:2	0/1:23,19:32:42:0.452:2	./.	0/1:30,16:32:46:0.348:2
chr15	63351873	rs11558747	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,24:29:38:0.632:2	./.	./.	./.	./.	./.	./.	0/1:14,21:29:35:0.600:2
chr15	63356309	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:30:86:0.047:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	63414083	rs34317102	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.
chr15	63419699	rs34536322	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,25:33:70:0.357:2	0/1:19,12:32:31:0.387:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	63433766	rs2729835	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,119:32:119:1.00:2	0/1:0,63:32:63:1.00:2	0/1:9,7:32:16:0.438:2	0/1:72,100:33:172:0.581:2	0/1:74,74:32:148:0.500:2	0/1:0,136:32:136:1.00:2	0/1:2,145:33:147:0.986:2	0/1:0,147:32:147:1.00:2	0/1:110,71:33:181:0.392:2	0/1:76,63:32:139:0.453:2	0/1:70,61:32:131:0.466:2
chr15	63447891	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:32:89:0.045:2
chr15	63548787	rs10851726	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:26,3:33:29:0.103:2	./.	./.	./.	0/1:16,21:32:37:0.568:2	./.	0/1:30,34:32:64:0.531:2	./.	./.	./.
chr15	63551808	rs36038234	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,7:32:22:0.318:2	0/1:9,3:31:12:0.250:2	./.	./.	./.	./.	0/1:27,16:33:43:0.372:2	./.
chr15	63569902	rs117618017	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:32,37:28:69:0.536:2	0/1:25,22:31:47:0.468:2	./.	./.	0/1:83,46:29:129:0.357:2	./.	./.	./.	./.	./.	./.
chr15	63673886	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,4:30:21:0.200:2	./.	./.	./.	./.	./.
chr15	63866278	rs61751107	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,54:33:163:0.331:2	./.	./.
chr15	63889934	rs8035931	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,17:33:30:0.567:2	./.	./.	./.	0/1:29,16:33:45:0.356:2	./.	./.	./.
chr15	63918307	rs1140422	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,42:27:76:0.553:2	./.	./.	./.	./.	0/1:0,41:28:41:1.00:2	./.
chr15	63922752	rs10851731	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,72:32:74:0.973:2	0/1:0,60:32:60:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,103:32:103:1.00:2	0/1:1,125:32:126:0.992:2	0/1:0,91:31:91:1.00:2	0/1:1,110:32:111:0.991:2	0/1:0,126:32:126:1.00:2	0/1:0,112:32:112:1.00:2	0/1:2,97:32:99:0.980:2	0/1:54,59:32:113:0.522:2
chr15	63927034	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,5:27:83:0.061:2	./.	./.
chr15	63928213	rs373100664	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:130,4:33:134:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr15	63932513	rs2228517	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,78:33:79:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,14:33:14:1.00:2	0/1:38,37:33:75:0.493:2	0/1:49,22:32:71:0.310:2	0/1:1,91:32:92:0.989:2	0/1:49,38:33:87:0.437:2	./.	0/1:0,77:32:77:1.00:2	0/1:1,72:34:73:0.986:2	0/1:55,35:33:90:0.389:2
chr15	63937209	rs2229749	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,116:31:116:1.00:2	0/1:0,67:32:68:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,158:32:158:1.00:2	0/1:5,182:32:187:0.973:2	0/1:0,163:32:163:1.00:2	0/1:2,167:32:169:0.988:2	0/1:0,189:32:189:1.00:2	0/1:0,194:33:194:1.00:2	0/1:0,102:32:102:1.00:2	0/1:101,85:31:186:0.457:2
chr15	63950887	rs2228513	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,10:26:26:0.385:2	./.	./.	./.	./.	./.	./.	./.
chr15	63953153	rs2272209	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,32:33:34:0.941:2	0/1:1,11:33:12:0.917:2	./.	0/1:0,30:33:30:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,32:31:33:1.00:2	0/1:0,29:34:29:1.00:2	0/1:0,35:33:35:1.00:2	0/1:20,15:33:35:0.429:2
chr15	63954029	rs2228511	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,86:32:87:0.989:2	0/1:0,52:31:52:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,177:31:177:1.00:2	0/1:3,172:31:175:0.983:2	0/1:0,137:31:137:1.00:2	0/1:1,192:31:193:0.995:2	0/1:0,176:31:176:1.00:2	0/1:0,141:32:141:1.00:2	0/1:0,103:32:103:1.00:2	0/1:85,56:31:141:0.397:2
chr15	63966610	rs76205041	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,7:22:90:0.078:2	0/1:69,8:18:77:0.104:2	0/1:69,8:23:77:0.104:2	./.	0/1:83,8:26:91:0.088:2	0/1:95,5:30:100:0.050:2	./.	./.
chr15	63967299	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,3:33:59:0.051:2	./.	./.
chr15	63970326	rs200964205	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,24:31:47:0.511:2	./.	./.	./.
chr15	63970456	rs2228510	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,58:30:59:0.983:2	0/1:1,33:29:34:0.971:2	0/1:0,17:30:17:1.00:2	0/1:41,33:30:74:0.446:2	0/1:34,35:29:69:0.507:2	0/1:0,57:30:57:1.00:2	0/1:31,36:31:67:0.537:2	./.	0/1:1,74:30:75:0.987:2	0/1:1,51:29:52:0.981:2	0/1:52,38:30:90:0.422:2
chr15	63978726	rs201690555	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,18:28:33:0.545:2	./.	./.	./.	./.	./.
chr15	63981837	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,5:32:107:0.047:2
chr15	63988357	rs2255243	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:31:61:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,93:32:93:1.00:2	0/1:3,70:31:73:0.959:2	0/1:1,79:31:80:0.988:2	0/1:0,80:32:80:1.00:2	0/1:0,57:31:57:1.00:2	0/1:34,34:32:68:0.500:2
chr15	63988400	rs74814914	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,148:30:148:1.00:2	0/1:84,55:29:139:0.396:2	./.	./.	./.	./.
chr15	64005722	rs61749474	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,88:32:192:0.458:2	./.	./.	./.
chr15	64017644	rs79176409	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,10:18:99:0.101:2
chr15	64021476	rs61740450	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:32:11:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	64026963	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:33:184:0.022:2	./.	./.
chr15	64045263	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,4:33:65:0.063:2	./.	./.	./.	./.	./.	./.
chr15	64050450	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:34:113:0.035:2
chr15	64163155	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:31:139:0.029:2	./.	./.	./.
chr15	64231505	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,27:33:41:0.659:2	0/1:21,3:31:24:0.125:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	64332415	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:32:175:0.023:2	./.	./.
chr15	64367745	rs332233	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,15:27:27:0.556:2	0/1:15,11:28:26:0.423:2	0/1:13,3:29:16:0.188:2	./.
chr15	64385851	rs332259	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,181:33:181:1.00:2	0/1:0,125:32:125:1.00:2	0/1:19,11:33:30:0.367:2	0/1:3,167:32:170:0.982:2	0/1:0,138:31:138:1.00:2	0/1:0,165:32:165:1.00:2	0/1:0,147:32:147:1.00:2	0/1:0,174:32:174:1.00:2	0/1:0,164:34:164:1.00:2	0/1:0,171:32:171:1.00:2	0/1:0,172:32:172:1.00:2
chr15	64418397	rs1130603	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,40:28:42:1.00:2	0/1:0,22:29:23:1.00:2	./.	0/1:0,38:29:38:1.00:2	0/1:0,20:27:20:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,17:25:17:1.00:2	0/1:29,25:29:55:0.463:2	0/1:25,24:29:50:0.490:2	0/1:25,19:28:44:0.432:2	0/1:0,57:28:60:1.00:2
chr15	64419374	rs34257057	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,7:30:34:0.206:2	./.	./.	./.	./.	./.	./.
chr15	64452322	rs2307247	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,68:31:161:0.422:2	./.	./.	./.
chr15	64452339	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:33:157:0.025:2
chr15	64496654	rs55699712	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,11:30:30:0.367:2	./.	./.	./.	./.	./.
chr15	64508763	rs6494466	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:31:9:0.556:2	./.	0/1:27,24:31:51:0.471:2	./.	./.	0/1:41,28:32:69:0.406:2	0/1:39,28:32:67:0.418:2	0/1:24,21:31:45:0.467:2	./.
chr15	64706332	rs34758599	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,19:29:55:0.345:2	./.	./.	./.	./.	./.	./.
chr15	64710827	rs4776494	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,34:33:62:0.548:2	./.	./.	./.	0/1:46,25:33:71:0.352:2	0/1:50,48:32:98:0.490:2
chr15	64737225	rs7167612	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:32:76:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,99:32:99:1.00:2	0/1:2,54:31:56:0.964:2	0/1:0,122:32:122:1.00:2
chr15	64915106	rs525878	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,176:33:176:1.00:2	0/1:0,116:32:116:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,189:33:189:1.00:2	0/1:0,187:32:187:1.00:2	0/1:0,187:32:187:1.00:2	0/1:0,193:33:193:1.00:2	0/1:0,189:32:189:1.00:2	0/1:0,169:33:169:1.00:2	0/1:0,184:33:184:1.00:2	0/1:1,187:33:188:0.995:2
chr15	64962630	rs11633399	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,48:33:97:0.495:2	0/1:29,30:33:59:0.508:2	./.	0/1:1,107:32:108:0.991:2	0/1:0,87:32:87:1.00:2	0/1:53,57:32:110:0.518:2	0/1:4,89:32:93:0.957:2	0/1:72,46:33:118:0.390:2	0/1:84,54:33:138:0.391:2	./.	0/1:51,59:33:110:0.536:2
chr15	64967654	rs16948170	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,11:31:23:0.478:2	./.	./.	./.	./.	./.	./.
chr15	65040641	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,78:31:120:0.650:2	./.	./.	./.
chr15	65041622	rs6494493	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:32:24:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,50:31:50:1.00:2	0/1:30,39:31:69:0.565:2	0/1:0,47:30:47:1.00:2	0/1:1,52:32:53:0.981:2	0/1:0,65:31:65:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,49:32:49:1.00:2
chr15	65042585	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,3:33:57:0.053:2	./.	./.	./.	./.	./.
chr15	65108479	rs8036568	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,23:32:51:0.451:2	0/1:9,17:30:26:0.654:2	./.	./.	./.	0/1:35,30:32:65:0.462:2	./.	0/1:47,39:32:86:0.453:2	0/1:32,40:34:72:0.556:2	./.	./.
chr15	65108504	rs17802279	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,30:30:59:0.526:2	0/1:20,8:32:28:0.286:2	./.	0/1:67,37:30:104:0.356:2	0/1:1,67:30:68:0.985:2	0/1:35,35:30:70:0.500:2	0/1:0,55:30:55:1.00:2	./.	0/1:42,31:31:73:0.425:2	0/1:36,32:31:68:0.471:2	0/1:28,23:30:51:0.451:2
chr15	65110217	rs148690720	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,29:32:50:0.580:2	./.
chr15	65114504	.	C	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:24,5:27:29:0.172:2	./.	./.	0/1:50,5:28:55:0.091:2	./.	./.	./.	0/1:43,5:26:48:0.104:2	0/1:26,4:30:30:0.133:2	0/1:20,8:23:28:0.286:2	./.
chr15	65114505	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,5:22:25:0.208:2	./.
chr15	65153690	rs12595292	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:33:11:0.727:2	0/1:4,6:32:10:0.600:2	./.	./.	./.	0/1:22,11:30:33:0.333:2	./.	0/1:15,14:30:29:0.483:2	0/1:8,14:31:22:0.636:2	./.	./.
chr15	65157482	rs2010875	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:14,17:31:31:0.548:2	0/1:9,6:32:15:0.400:2	0/1:3,4:31:7:0.571:2	./.	./.	0/1:19,25:31:44:0.568:2	./.	0/1:37,25:30:62:0.403:2	0/1:25,6:33:31:0.194:2	./.	./.
chr15	65157954	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,20:31:44:0.455:2	./.	./.	./.	./.	./.	./.	./.
chr15	65235691	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:33:110:0.036:2	./.
chr15	65235776	rs34988193	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,77:33:161:0.478:2	./.	./.	./.	0/1:99,70:33:169:0.414:2	0/1:83,58:33:141:0.411:2	0/1:56,73:31:129:0.566:2	./.
chr15	65236875	rs2414865	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,56:29:101:0.554:2	0/1:30,30:30:60:0.500:2	0/1:11,10:32:21:0.476:2	0/1:76,65:29:141:0.461:2	0/1:95,73:29:168:0.435:2	0/1:81,62:30:143:0.434:2	./.	0/1:96,80:30:176:0.455:2	0/1:77,97:31:174:0.557:2	0/1:63,62:29:125:0.496:2	./.
chr15	65295505	rs35477493	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,39:31:73:0.534:2	./.	./.	./.	./.	./.	./.
chr15	65297261	rs34636936	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,29:32:74:0.392:2	./.	./.	./.	./.	./.	./.
chr15	65345426	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:33:74:0.054:2
chr15	65347405	rs2232762	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,16:33:29:0.552:2	0/1:7,9:32:16:0.563:2	0/1:0,7:32:7:1.00:2	0/1:17,25:32:42:0.595:2	0/1:12,13:32:25:0.520:2	0/1:14,27:31:41:0.659:2	./.	0/1:0,45:32:45:1.00:2	0/1:15,11:33:26:0.423:2	0/1:20,20:32:40:0.500:2	0/1:0,21:33:21:1.00:2
chr15	65369395	rs2919358	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,4:29:6:0.667:2	./.	./.	./.	./.	./.	./.
chr15	65369487	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr15	65369951	rs2919359	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,2:30:2:1.00:2	./.	./.	0/1:0,2:30:2:1.00:2	0/1:0,4:28:4:1.00:2	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	0/1:0,2:28:2:1.00:2
chr15	65370230	rs199526404	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,22:29:51:0.431:2	./.	./.	./.	./.
chr15	65370350	rs150830358	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,7:30:10:0.700:2	./.	./.	./.	./.	./.	./.
chr15	65370353	rs2919360	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,15:26:15:1.00:2	0/1:0,8:27:8:1.00:2	./.	0/1:0,12:28:12:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,10:25:10:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,7:28:7:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,3:31:3:1.00:2
chr15	65445957	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:32:121:0.033:2
chr15	65472527	rs142954778	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	65489128	rs938952	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:31:47:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,9:32:9:1.00:2	0/1:42,43:31:85:0.506:2	0/1:0,58:31:58:1.00:2	0/1:54,37:32:91:0.407:2	0/1:49,45:32:94:0.479:2	0/1:39,41:31:80:0.513:2	0/1:34,23:32:57:0.404:2	0/1:0,56:32:56:1.00:2	0/1:0,77:31:77:1.00:2
chr15	65489352	rs375005576	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,8:31:21:0.381:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	65489688	rs2679117	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,86:27:87:0.989:2	0/1:0,44:29:44:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,120:28:120:1.00:2	0/1:0,115:27:115:1.00:2	0/1:0,86:28:86:1.00:2	0/1:0,91:27:91:1.00:2	0/1:0,127:27:127:1.00:2	0/1:0,123:29:123:1.00:2	0/1:0,90:27:90:1.00:2	0/1:0,79:27:79:1.00:2
chr15	65490901	rs2679118	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:32:64:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,67:33:67:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,64:32:64:1.00:2	0/1:2,96:32:98:0.980:2	0/1:0,85:33:85:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,89:32:89:1.00:2
chr15	65494212	rs2073711	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,38:33:38:1.00:2	0/1:2,29:32:31:0.935:2	0/1:0,47:32:47:1.00:2	0/1:35,19:32:54:0.352:2	0/1:33,13:32:46:0.283:2	0/1:16,22:34:38:0.579:2	0/1:16,32:33:48:0.667:2	0/1:0,41:32:41:1.00:2
chr15	65496717	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,76:33:169:0.450:2	./.	./.	./.	./.	./.	./.	./.
chr15	65553246	rs2304896	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:29:10:0.500:2	./.	0/1:59,57:30:116:0.491:2	./.	./.	./.	./.	0/1:54,45:31:100:0.455:2	0/1:92,75:30:167:0.449:2
chr15	65621441	rs12907128	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,44:32:44:1.00:2	0/1:1,27:31:28:0.964:2	./.	0/1:0,51:30:51:1.00:2	0/1:29,31:31:60:0.517:2	0/1:24,40:31:64:0.625:2	0/1:0,51:32:51:1.00:2	0/1:42,44:31:86:0.512:2	0/1:0,65:32:65:1.00:2	0/1:24,23:31:47:0.489:2	0/1:20,5:30:25:0.200:2
chr15	65621857	rs509652	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:31:18:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,23:33:23:1.00:2	0/1:1,22:32:23:0.957:2	0/1:0,26:28:26:1.00:2
chr15	65627188	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:29:56:0.071:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	65628287	rs117357415	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,34:32:88:0.386:2	./.	./.	./.	./.	./.	./.	./.
chr15	65667724	rs666623	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:31:29:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,11:30:11:1.00:2	0/1:1,54:31:55:0.982:2	0/1:0,46:30:46:1.00:2	0/1:27,25:30:52:0.481:2	0/1:0,67:30:67:1.00:2	0/1:0,70:30:70:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,32:30:33:1.00:2	0/1:0,38:31:38:1.00:2
chr15	65676617	rs2292933	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:6,20:29:26:0.769:2	0/1:12,9:28:21:0.429:2	./.	0/1:28,21:28:49:0.429:2	./.	./.	./.	0/1:32,21:30:53:0.396:2	0/1:21,17:30:38:0.447:2	0/1:19,20:29:39:0.513:2	./.
chr15	65676726	rs33918653	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,4:31:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:33:6:0.667:2	./.	./.
chr15	65678318	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,6:20:19:0.316:2	./.	./.	./.	./.	./.	./.	./.
chr15	65681184	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,12:32:80:0.150:2	./.
chr15	65684533	rs2277582	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:25,27:31:52:0.519:2	0/1:15,25:32:40:0.625:2	./.	0/1:37,35:31:72:0.486:2	./.	./.	./.	0/1:77,44:31:121:0.364:2	./.	./.	./.
chr15	65684591	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,7:17:47:0.149:2
chr15	65689267	rs12442757	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:52,32:32:84:0.381:2	0/1:23,22:32:45:0.489:2	./.	0/1:77,38:32:116:0.330:2	./.	./.	./.	0/1:123,42:31:165:0.255:2	0/1:64,38:33:102:0.373:2	./.	0/1:38,28:32:66:0.424:2
chr15	65703370	rs146891762	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,26:30:45:0.578:2	./.	./.
chr15	65703625	rs34355056	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,30:32:50:0.600:2	0/1:15,9:32:24:0.375:2	./.	./.	./.	0/1:27,27:32:54:0.500:2	0/1:30,13:32:43:0.302:2	./.	./.	./.	./.
chr15	65739303	rs11009	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,47:31:48:0.979:2	./.	./.	./.	./.	./.	./.
chr15	65772698	rs352461	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,40:32:40:1.00:2	./.	./.	./.	./.	./.	./.
chr15	65804892	rs118088815	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,47:30:103:0.456:2	./.	./.	./.	./.	./.	0/1:45,40:31:85:0.471:2	./.
chr15	65807965	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:32:146:0.027:2	./.	./.	./.	./.	./.
chr15	65808034	rs116808836	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,31:33:73:0.425:2	./.	./.
chr15	65808046	rs114911930	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,27:34:60:0.450:2	./.	./.
chr15	65856653	rs11539008	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:43,31:31:74:0.419:2	0/1:33,20:31:53:0.377:2	0/1:7,12:31:19:0.632:2	./.	0/1:0,97:31:97:1.00:2	./.	0/1:69,44:32:113:0.389:2	./.	./.	./.	./.
chr15	65863917	rs2279854	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,194:32:196:0.995:2	./.	./.	./.	./.	./.	./.
chr15	65916527	rs3743171	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:59,40:31:99:0.404:2	0/1:29,24:32:53:0.453:2	0/1:9,5:31:14:0.357:2	./.	./.	./.	./.	./.	./.	0/1:50,39:31:89:0.438:2	0/1:0,117:31:117:1.00:2
chr15	65917349	rs34363823	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,13:33:30:0.433:2	./.	./.
chr15	65917355	rs35571449	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,22:31:22:1.00:2	./.	./.	./.	./.	./.	./.
chr15	65917409	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,4:32:9:0.444:2
chr15	65917830	rs181068344	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,89:32:190:0.468:2	./.	./.	./.	./.	./.	./.	./.
chr15	65942993	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:32:124:0.032:2	./.	./.	./.	./.	./.
chr15	65994733	rs17810074	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,65:31:142:0.458:2	0/1:3,121:31:124:0.976:2	./.	./.	./.
chr15	66034125	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,3:31:29:0.103:2	./.	./.	./.
chr15	66206204	rs3803414	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,121:31:123:0.984:2	./.	./.	0/1:71,65:32:136:0.478:2	./.	./.	./.
chr15	66214785	rs11637551	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,23:29:40:0.575:2	0/1:14,22:32:36:0.611:2
chr15	66220799	rs137866207	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,91:32:180:0.506:2	./.	./.
chr15	66257408	rs333550	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:30:47:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,77:31:77:1.00:2	0/1:0,83:29:84:1.00:2	0/1:0,94:29:94:1.00:2	0/1:0,84:29:84:1.00:2	0/1:0,85:29:85:1.00:2	0/1:0,55:29:55:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,48:29:48:1.00:2
chr15	66273187	rs145333107	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,55:31:117:0.474:2	./.	./.	./.	./.	./.
chr15	66274690	rs551474	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.
chr15	66411441	rs16949528	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,15:31:34:0.441:2	0/1:2,21:30:23:0.913:2	0/1:0,27:29:27:1.00:2	0/1:17,11:31:28:0.393:2	./.	./.	0/1:12,15:29:27:0.556:2	./.
chr15	66612965	rs17851970	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,9:29:22:0.409:2	0/1:81,72:29:153:0.471:2	./.	0/1:99,68:29:167:0.407:2	0/1:62,71:29:133:0.534:2	0/1:84,61:29:145:0.421:2	./.	0/1:4,113:29:117:0.966:2	0/1:96,73:29:169:0.432:2
chr15	66615250	rs34668776	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,41:31:82:0.500:2
chr15	66618342	rs3803412	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,34:30:63:0.540:2	./.	0/1:55,38:32:93:0.409:2	./.	0/1:64,36:32:100:0.360:2	./.	./.
chr15	66621382	rs35711894	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,40:30:90:0.444:2	./.
chr15	66625161	rs11071885	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,46:30:103:0.447:2	0/1:28,22:31:50:0.440:2	0/1:60,48:29:108:0.444:2	./.	0/1:67,50:29:117:0.427:2	0/1:36,40:31:76:0.526:2	./.	./.
chr15	66629394	rs34848112	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,7:30:15:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	66629403	rs3759786	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,113:32:116:0.974:2	0/1:1,64:32:65:0.985:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	66641417	rs11856320	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,10:33:18:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	66641440	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:33:178:0.022:2	./.
chr15	66644521	rs9806123	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,118:33:118:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,170:33:170:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,147:32:147:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,167:32:167:1.00:2	0/1:0,192:34:192:1.00:2	0/1:0,117:32:117:1.00:2	0/1:0,188:33:188:1.00:2
chr15	66777345	rs17586159	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,19:32:43:0.442:2	0/1:10,10:32:20:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	66777474	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:33:41:0.098:2	./.	./.	./.	./.	./.
chr15	66777513	rs370521459	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,4:32:22:0.182:2	./.	./.	./.	./.	./.
chr15	66777522	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,4:32:18:0.222:2	./.	./.	./.	./.	./.
chr15	66782048	rs41306345	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,24:31:61:0.393:2	0/1:28,11:32:39:0.282:2	0/1:21,9:32:30:0.300:2	./.	0/1:39,27:32:66:0.409:2	0/1:27,15:33:42:0.357:2	./.	./.
chr15	66793795	rs146070182	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,31:30:60:0.517:2	./.	./.	./.	./.	./.
chr15	66821250	rs11071896	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,10:33:17:0.588:2	0/1:63,68:32:131:0.519:2	./.	0/1:62,44:31:107:0.415:2	0/1:73,37:32:110:0.336:2	0/1:74,64:32:138:0.464:2	./.	0/1:68,31:32:99:0.313:2	0/1:83,73:32:156:0.468:2
chr15	66832466	rs75532475	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,49:32:96:0.510:2	0/1:40,14:32:54:0.259:2	0/1:61,39:31:100:0.390:2	./.	0/1:65,58:33:123:0.472:2	0/1:58,52:33:110:0.473:2	./.	./.
chr15	66838922	rs147104726	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,43:31:99:0.434:2
chr15	66850204	rs16953566	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,18:32:28:0.643:2	./.	./.	./.	./.	./.
chr15	66850220	rs34672663	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,16:31:37:0.432:2
chr15	66850362	rs1030986	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,70:30:156:0.449:2	./.	./.	./.	./.	./.
chr15	66857050	rs115163164	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,20:31:48:0.417:2
chr15	67457335	rs1065080	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:32:39:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,80:32:80:1.00:2	0/1:43,45:33:88:0.511:2	0/1:0,98:32:98:1.00:2	0/1:0,73:34:73:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,57:31:57:1.00:2
chr15	67496402	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:31:97:0.041:2	./.	./.	./.
chr15	67528374	rs7173826	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,55:33:115:0.478:2	0/1:30,35:32:65:0.538:2	0/1:4,8:32:12:0.667:2	0/1:71,49:32:120:0.408:2	0/1:47,41:32:88:0.466:2	./.	0/1:2,71:33:73:0.973:2	0/1:105,74:32:179:0.413:2	./.	./.	0/1:86,60:32:146:0.411:2
chr15	67547301	rs3743347	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,52:25:104:0.505:2	0/1:39,37:29:76:0.487:2	0/1:10,14:25:24:0.583:2	0/1:43,43:23:86:0.500:2	0/1:56,40:23:96:0.417:2	./.	0/1:43,39:22:82:0.476:2	0/1:42,47:22:90:0.528:2	./.	./.	0/1:52,50:26:102:0.490:2
chr15	67681299	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:32:73:0.055:2	./.	./.	./.	./.	./.
chr15	67692502	rs7495023	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,113:33:113:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,132:33:132:1.00:2	0/1:0,117:33:117:1.00:2	0/1:0,148:33:148:1.00:2	0/1:0,143:33:143:1.00:2	0/1:0,165:33:165:1.00:2	0/1:0,129:34:129:1.00:2	0/1:0,115:33:115:1.00:2	0/1:0,186:33:187:1.00:2
chr15	67757470	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:32:117:0.034:2	./.	./.	./.	./.	./.
chr15	67768151	rs3985641	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:33:92:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,132:33:132:1.00:2	0/1:0,113:33:113:1.00:2	0/1:0,133:32:133:1.00:2	0/1:0,128:33:128:1.00:2	0/1:0,117:32:117:1.00:2	0/1:0,136:34:136:1.00:2	0/1:0,143:33:143:1.00:2	0/1:0,141:33:141:1.00:2
chr15	67885319	rs56090924	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,40:31:83:0.482:2	./.
chr15	67893059	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:31:79:0.051:2	./.	./.	./.	./.	./.
chr15	67933784	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:33:105:0.038:2	./.	./.
chr15	67938728	rs56254481	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,19:31:44:0.432:2	./.	./.	./.	./.	./.	./.
chr15	67985931	rs8034680	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:28:45:1.00:2	0/1:0,40:27:40:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,68:29:68:1.00:2	0/1:1,27:27:28:0.964:2	0/1:0,44:27:44:1.00:2	0/1:0,44:27:44:1.00:2	0/1:0,44:28:44:1.00:2	0/1:0,40:29:40:1.00:2	0/1:0,67:28:67:1.00:2	0/1:0,87:28:87:1.00:2
chr15	68118028	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:32:77:0.052:2	./.	./.	./.
chr15	68124665	rs72751453	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:21,21:33:42:0.500:2	0/1:10,12:33:22:0.545:2	./.	./.	./.	./.	./.	0/1:37,25:32:62:0.403:2	0/1:0,25:33:25:1.00:2	./.	0/1:17,20:32:37:0.541:2
chr15	68434636	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:30:140:0.029:2	./.	./.	./.	./.	./.
chr15	68468098	rs113555272	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,25:32:75:0.333:2	./.	./.	./.	./.
chr15	68473676	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:32:178:0.022:2	./.	./.	./.	./.
chr15	68489810	rs2280217	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,47:32:110:0.431:2	./.	./.	./.	./.
chr15	68497597	rs11071990	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,23:31:51:0.460:2	./.	./.	./.	./.
chr15	68582178	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:33:151:0.026:2	./.
chr15	68582432	rs148564851	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,17:32:42:0.405:2	./.	./.	./.	./.	./.	./.
chr15	68583175	rs6494729	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:32:81:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,98:32:98:1.00:2	0/1:0,80:32:80:1.00:2	0/1:1,117:32:118:0.992:2	0/1:0,109:32:109:1.00:2	0/1:0,91:33:91:1.00:2	0/1:0,74:32:75:1.00:2	0/1:0,114:32:114:1.00:2
chr15	68583212	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:120,4:33:124:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr15	68605169	rs4777035	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,32:32:63:0.508:2	0/1:20,19:33:39:0.487:2	0/1:6,4:33:10:0.400:2	0/1:0,87:32:87:1.00:2	0/1:0,104:32:104:1.00:2	./.	0/1:70,64:32:134:0.478:2	0/1:78,39:32:117:0.333:2	0/1:0,87:33:87:1.00:2	0/1:56,30:32:87:0.349:2	./.
chr15	68613778	rs3736494	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:43,60:33:103:0.583:2	0/1:36,22:32:58:0.379:2	0/1:6,8:30:14:0.571:2	./.	./.	./.	./.	./.	0/1:84,67:33:151:0.444:2	./.	./.
chr15	68613787	rs3736493	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:52,66:33:118:0.559:2	0/1:42,23:33:65:0.354:2	0/1:8,8:33:16:0.500:2	./.	./.	./.	./.	./.	0/1:92,74:34:166:0.446:2	./.	./.
chr15	68624290	rs2292745	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,42:31:94:0.447:2	./.
chr15	68624396	rs7168069	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,26:29:57:0.456:2	0/1:15,19:28:34:0.559:2	0/1:6,5:30:11:0.455:2	0/1:1,92:29:93:0.989:2	0/1:0,48:27:48:1.00:2	0/1:1,76:28:77:0.987:2	0/1:1,64:28:65:0.985:2	0/1:0,76:29:76:1.00:2	0/1:0,83:29:83:1.00:2	0/1:0,52:28:52:1.00:2	0/1:0,77:28:77:1.00:2
chr15	68628049	rs2306024	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,41:33:80:0.513:2	0/1:48,32:32:80:0.400:2	./.
chr15	68628143	rs2306023	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,38:30:72:0.528:2	0/1:18,16:32:34:0.471:2	0/1:1,3:31:4:0.750:2	0/1:0,101:31:101:1.00:2	0/1:1,107:30:108:0.991:2	0/1:0,112:31:112:1.00:2	0/1:0,139:30:139:1.00:2	0/1:2,123:31:125:0.984:2	0/1:33,56:32:89:0.629:2	0/1:33,39:30:72:0.542:2	0/1:0,65:31:66:1.00:2
chr15	68631894	rs61729767	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:18,7:32:25:0.280:2	0/1:6,7:32:13:0.538:2	0/1:3,3:32:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	68643660	rs200444029	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,90:32:173:0.520:2	./.	./.
chr15	68649587	rs12907890	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:29,32:32:61:0.525:2	0/1:12,22:32:34:0.647:2	0/1:4,6:33:10:0.600:2	./.	0/1:0,80:31:80:1.00:2	./.	0/1:0,85:32:85:1.00:2	0/1:0,83:31:83:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,69:32:69:1.00:2	0/1:29,31:32:60:0.517:2
chr15	68695349	rs11629460	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:2,51:30:53:0.962:2	0/1:0,40:31:40:1.00:2	0/1:6,6:30:12:0.500:2	./.	./.	./.	0/1:70,46:30:117:0.397:2	0/1:72,50:29:122:0.410:2	./.	./.	./.
chr15	69003905	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:186,4:33:190:0.021:2	./.	./.	./.	./.	./.	./.
chr15	69003913	rs36077420	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,36:33:70:0.514:2	0/1:26,33:32:59:0.559:2	./.	./.	./.	./.	./.	./.	0/1:70,58:32:128:0.453:2	./.	./.
chr15	69011119	rs33913544	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,43:32:43:1.00:2	0/1:0,23:32:23:1.00:2	0/1:8,5:31:13:0.385:2	./.	./.	./.	./.	0/1:43,52:31:95:0.547:2	0/1:0,82:33:82:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,61:32:61:1.00:2
chr15	69072417	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:32:71:0.056:2	./.
chr15	69079762	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.	./.	./.	./.
chr15	69079793	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:32:133:0.030:2	./.	./.	./.	./.
chr15	69079799	.	T	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,5:30:129:0.039:2	0/1:152,10:30:162:0.062:2	./.	0/1:139,6:31:145:0.041:2	./.
chr15	69079815	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,5:28:123:0.041:2	0/1:143,10:32:153:0.065:2	./.	0/1:122,8:29:130:0.062:2	./.
chr15	69238272	rs3743091	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,12:31:25:0.480:2	./.	./.	./.	./.	0/1:19,18:32:37:0.486:2
chr15	69238445	rs3743093	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,7:33:8:0.875:2	0/1:37,34:32:71:0.479:2	0/1:25,34:33:59:0.576:2	0/1:0,63:32:63:1.00:2	0/1:32,37:33:69:0.536:2	./.	0/1:27,30:33:57:0.526:2	0/1:0,39:33:39:1.00:2	0/1:0,68:33:68:1.00:2
chr15	69238733	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:30:121:0.033:2	./.	./.
chr15	69325581	rs311893	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,8:31:8:1.00:2	./.	./.	0/1:0,3:31:3:1.00:2	0/1:0,3:30:3:1.00:2	./.	0/1:0,5:31:5:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,2:30:2:1.00:2	./.	./.
chr15	69327825	rs311889	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:32:66:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,145:32:145:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,135:32:135:1.00:2	0/1:0,118:32:118:1.00:2	0/1:2,88:33:91:0.978:2	0/1:0,85:33:85:1.00:2	0/1:61,51:33:112:0.455:2
chr15	69328156	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,35:32:88:0.402:2
chr15	69328226	rs12907196	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:31:6:0.500:2	0/1:60,57:32:117:0.487:2	0/1:77,47:32:124:0.379:2	0/1:60,54:31:114:0.474:2	0/1:75,64:32:139:0.460:2	./.	0/1:49,50:32:99:0.505:2	0/1:2,79:31:81:0.975:2	0/1:47,34:33:81:0.420:2
chr15	69339823	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:32:93:0.043:2	./.	./.	./.
chr15	69548338	rs12440300	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,76:32:120:0.633:2	0/1:62,47:32:109:0.431:2	./.	./.	./.	./.	./.	./.
chr15	69553606	rs184716019	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:33:173:0.023:2	./.	./.	./.
chr15	69561518	rs3865014	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:32:7:1.00:2	0/1:37,42:30:79:0.532:2	0/1:27,37:30:64:0.578:2	0/1:0,62:30:62:1.00:2	0/1:0,81:31:81:1.00:2	0/1:2,71:31:73:0.973:2	0/1:0,60:32:60:1.00:2	0/1:0,58:31:58:1.00:2	0/1:23,35:30:58:0.603:2
chr15	69682021	rs12438855	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,74:31:163:0.454:2	./.	./.	./.	./.	./.	./.
chr15	69709748	rs3759826	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,3:32:34:0.088:2	./.	./.	./.
chr15	69709763	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:29:45:0.089:2
chr15	69709792	rs61751119	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,18:32:28:0.643:2	./.
chr15	69715633	rs61750337	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,35:32:70:0.500:2	./.	./.	./.	./.	./.
chr15	69728949	rs3825858	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:29:87:1.00:2	0/1:0,71:29:71:1.00:2	0/1:0,17:29:17:1.00:2	0/1:2,128:29:130:0.985:2	0/1:71,58:28:129:0.450:2	0/1:0,113:29:113:1.00:2	0/1:0,109:29:109:1.00:2	0/1:2,152:29:154:0.987:2	0/1:0,126:29:126:1.00:2	0/1:0,93:30:93:1.00:2	0/1:0,144:29:144:1.00:2
chr15	69729049	rs17310879	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,25:31:51:0.490:2	./.	./.	./.	./.	./.	./.	./.
chr15	69732736	rs937724	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:33:33:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,26:32:26:1.00:2	0/1:10,14:30:24:0.583:2	0/1:0,20:31:20:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,25:33:25:1.00:2	0/1:0,45:33:45:1.00:2
chr15	69746033	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,12:30:197:0.061:2	./.	./.	./.
chr15	69746036	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,7:31:196:0.036:2	./.	./.	./.
chr15	70345626	rs1057865	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:33:14:0.429:2	./.	./.	0/1:66,92:32:158:0.582:2	0/1:81,111:33:192:0.578:2	0/1:109,86:32:195:0.441:2	0/1:78,63:34:141:0.447:2	./.	0/1:81,53:31:134:0.396:2
chr15	70346923	rs2228178	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,19:28:36:0.559:2	0/1:22,20:30:42:0.476:2	0/1:16,19:31:35:0.543:2	0/1:16,23:31:39:0.590:2	./.	0/1:12,6:31:18:0.333:2
chr15	70351788	rs2133977	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:32:7:1.00:2	0/1:31,42:33:73:0.575:2	./.	0/1:48,35:33:83:0.422:2	0/1:0,63:33:63:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,67:33:67:1.00:2	0/1:22,26:33:48:0.542:2	0/1:0,48:33:48:1.00:2
chr15	70352968	rs2228176	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,13:31:34:0.382:2	./.	./.	0/1:21,17:30:38:0.447:2	0/1:27,15:31:42:0.357:2	0/1:27,14:30:41:0.341:2	0/1:26,13:29:39:0.333:2	0/1:21,25:31:46:0.543:2
chr15	70368432	rs2291986	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,15:32:42:0.357:2	0/1:7,7:33:14:0.500:2	./.	0/1:36,21:33:57:0.368:2	0/1:18,27:32:45:0.600:2	0/1:22,10:32:32:0.313:2	./.	./.	./.	./.	./.
chr15	70960068	rs934005	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,130:32:131:0.992:2	0/1:0,88:32:88:1.00:2	0/1:1,14:31:15:0.933:2	0/1:87,79:32:166:0.476:2	0/1:0,88:32:88:1.00:2	0/1:0,163:31:163:1.00:2	0/1:0,116:32:116:1.00:2	./.	0/1:0,152:32:152:1.00:2	0/1:0,133:32:133:1.00:2	./.
chr15	70964274	rs62016910	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,13:30:27:0.481:2
chr15	70975092	rs62016913	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,49:32:123:0.402:2
chr15	70991925	rs4776525	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,112:28:114:0.982:2	0/1:1,56:28:57:0.982:2	0/1:0,12:30:12:1.00:2	0/1:94,58:29:152:0.382:2	0/1:0,110:28:110:1.00:2	0/1:0,151:28:151:1.00:2	0/1:2,101:29:103:0.981:2	0/1:0,149:28:149:1.00:2	0/1:0,138:29:138:1.00:2	0/1:0,124:29:124:1.00:2	0/1:0,145:28:146:1.00:2
chr15	70994283	rs6494889	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,36:31:36:1.00:2	./.	./.	0/1:1,37:32:38:0.974:2
chr15	71125093	rs3825970	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:30:79:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,12:30:12:1.00:2	0/1:1,133:31:134:0.993:2	0/1:0,112:30:112:1.00:2	./.	0/1:70,54:31:124:0.435:2	./.	0/1:54,60:31:114:0.526:2	0/1:70,48:31:118:0.407:2	0/1:74,56:30:130:0.431:2
chr15	71125204	rs1549317	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:30:41:1.00:2	0/1:0,23:29:23:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,47:29:47:1.00:2	0/1:2,38:29:40:0.950:2	./.	0/1:25,22:28:47:0.468:2	./.	0/1:39,13:29:52:0.250:2	0/1:21,22:31:43:0.512:2	0/1:24,24:29:48:0.500:2
chr15	71125339	rs28676469	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:29,21:31:50:0.420:2	0/1:21,16:32:37:0.432:2	./.	0/1:30,40:31:70:0.571:2	./.	./.	./.	./.	./.	./.	0/1:38,30:31:68:0.441:2
chr15	71184278	rs2959174	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,51:31:51:1.00:2	0/1:31,29:31:60:0.483:2	0/1:0,43:31:43:1.00:2	0/1:13,16:33:29:0.552:2	0/1:17,9:32:26:0.346:2	0/1:19,9:31:28:0.321:2
chr15	71184495	rs2955035	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,128:32:129:0.992:2	0/1:52,40:32:93:0.435:2	0/1:1,83:32:84:0.988:2	0/1:85,49:33:136:0.366:2	0/1:53,39:31:92:0.424:2	0/1:31,21:32:54:0.404:2
chr15	71185230	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:34:93:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	71634009	.	C	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:156,9:30:165:0.055:2	0/1:79,6:31:85:0.071:2	0/1:14,7:31:21:0.333:2	0/1:174,16:30:190:0.084:2	0/1:141,8:30:150:0.054:2	0/1:179,11:30:190:0.058:2	0/1:146,14:31:160:0.088:2	0/1:183,9:31:192:0.047:2	0/1:177,20:32:197:0.102:2	0/1:178,10:29:188:0.053:2	0/1:175,13:30:188:0.069:2
chr15	71953045	rs62024298	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,32:33:67:0.478:2	0/1:27,14:32:41:0.341:2	./.	./.	./.	0/1:0,51:32:51:1.00:2	0/1:61,43:32:104:0.413:2	0/1:49,47:32:96:0.490:2	./.	./.	./.
chr15	72040774	rs1872056	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,15:31:27:0.556:2	0/1:101,96:31:197:0.487:2	./.	0/1:99,93:32:192:0.484:2	./.	./.	./.	0/1:114,82:32:196:0.418:2	0/1:105,82:31:187:0.439:2
chr15	72057380	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:34:128:0.031:2	./.
chr15	72104364	rs1805020	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:33:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	72104433	rs1805021	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:29:11:0.364:2	./.	./.	./.
chr15	72122512	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,62:30:122:0.508:2
chr15	72168203	rs187561342	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,39:30:88:0.443:2	./.	./.	./.	./.	./.	./.
chr15	72170400	rs148435644	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,22:30:44:0.500:2	./.	./.	./.	0/1:41,26:31:67:0.388:2	./.	./.
chr15	72172883	rs2306575	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,9:30:24:0.375:2	./.	./.	./.
chr15	72180440	rs148060237	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,34:31:57:0.596:2	./.	./.	./.
chr15	72186069	rs150726107	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,31:30:95:0.326:2	./.	./.	./.
chr15	72189894	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,96:31:193:0.497:2	./.	./.	./.	./.	./.
chr15	72190760	rs55738821	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,21:32:37:0.568:2	./.	./.	./.	0/1:24,26:34:51:0.520:2	./.	./.
chr15	72191073	rs2415128	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,173:32:173:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,25:32:25:1.00:2	0/1:78,88:32:166:0.530:2	0/1:53,56:31:109:0.514:2	0/1:1,129:32:130:0.992:2	0/1:2,142:32:144:0.986:2	0/1:79,75:32:154:0.487:2	0/1:0,150:33:150:1.00:2	0/1:2,165:32:167:0.988:2	0/1:2,173:32:175:0.989:2
chr15	72191266	rs2415129	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:31:33:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,25:31:25:1.00:2	0/1:36,29:32:65:0.446:2	0/1:0,39:32:39:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,57:30:57:1.00:2
chr15	72260416	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,20:29:43:0.465:2	./.	./.	./.
chr15	72432157	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,4:31:99:0.040:2	./.	./.	./.	./.	./.	./.
chr15	72432583	rs930871	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:33:39:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,44:33:44:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,45:33:45:1.00:2	0/1:2,45:33:47:0.957:2	0/1:0,45:33:45:1.00:2	0/1:0,38:32:38:1.00:2	0/1:1,47:33:48:0.979:2
chr15	72433144	rs13858	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,105:29:106:1.00:2	0/1:0,44:28:44:1.00:2	0/1:6,5:29:11:0.455:2	0/1:63,50:29:113:0.442:2	0/1:44,29:30:73:0.397:2	0/1:0,79:30:79:1.00:2	0/1:5,63:29:68:0.926:2	0/1:71,61:30:132:0.462:2	0/1:2,126:30:128:0.984:2	0/1:1,95:30:97:0.990:2	0/1:2,115:29:117:0.983:2
chr15	72433182	rs55854204	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,42:32:92:0.457:2	0/1:26,25:31:51:0.490:2	./.	0/1:65,4:30:69:0.058:2	./.	./.	./.	./.
chr15	72502115	rs61753428	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,101:33:195:0.518:2	./.	./.	./.
chr15	72502141	rs10514	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,57:32:166:0.343:2	./.	./.	./.	./.	./.	./.
chr15	72502151	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:31:168:0.024:2	./.	./.	./.	./.	./.
chr15	72543266	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,50:31:120:0.417:2	./.	./.	./.	./.
chr15	72545783	rs140971620	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,40:33:114:0.351:2	0/1:29,34:32:63:0.540:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	72545857	rs3803388	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:28:6:0.500:2	./.	./.	./.	./.	0/1:56,48:29:104:0.462:2	./.	./.	./.
chr15	72546789	rs199742529	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,22:29:36:0.611:2	./.	./.	./.
chr15	72550446	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,6:30:177:0.034:2	./.	./.	./.	./.	./.
chr15	72551951	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:32:113:0.035:2	./.	./.
chr15	72558318	rs147769992	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,20:30:39:0.513:2	./.	./.	./.	./.	./.	./.
chr15	72608242	rs377177378	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	72637795	rs4777502	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,87:32:88:1.00:2	0/1:2,69:32:71:0.972:2	0/1:0,92:31:92:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,67:32:67:1.00:2
chr15	72638892	rs1800431	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:30:44:1.00:2	0/1:0,21:29:21:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,39:29:39:1.00:2	0/1:1,40:29:41:0.976:2	0/1:0,60:30:60:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,56:30:56:1.00:2
chr15	72640046	rs78532913	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,16:15:161:0.099:2	./.	./.	./.
chr15	72668305	rs1800428	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:29:9:0.333:2	./.	./.	./.	./.	0/1:14,10:28:25:0.417:2	./.	./.	./.
chr15	72950955	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,19:32:194:0.098:2	./.	./.	./.
chr15	72954595	rs200411442	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,4:32:96:0.042:2	./.	./.	./.	./.	./.	./.	./.
chr15	72954638	rs201621826	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,67:32:71:0.957:2
chr15	72954652	rs201023176	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	72954733	rs200440155	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:2,6:33:8:0.750:2	0/1:2,4:33:6:0.667:2	./.	./.	0/1:164,5:32:169:0.030:2	./.	./.	./.	./.	./.	./.
chr15	72954738	rs201490179	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:2,6:32:8:0.750:2	0/1:3,3:32:6:0.500:2	./.	./.	0/1:173,6:33:179:0.034:2	./.	./.	./.	./.	./.	./.
chr15	72954745	rs199545027	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,160:31:163:0.982:2
chr15	72954837	rs375343704	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,56:33:197:0.284:2	./.	./.
chr15	72954890	rs375298217	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:167,6:32:173:0.035:2	./.	./.	./.	./.	./.	./.	0/1:176,14:32:190:0.074:2	./.	./.	0/1:178,8:31:186:0.043:2
chr15	72955038	.	G	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,7:31:35:0.200:2	0/1:16,7:32:23:0.304:2	./.	0/1:56,6:24:62:0.097:2	0/1:48,9:28:57:0.158:2	0/1:47,7:28:54:0.130:2	0/1:42,8:31:51:0.160:2	./.	0/1:33,7:27:40:0.175:2	0/1:28,9:29:37:0.243:2	0/1:28,7:30:35:0.200:2
chr15	72956800	rs184313605	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:33:4:0.750:2
chr15	72956845	rs200244921	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,6:33:24:0.250:2	./.	./.	./.	./.
chr15	72958032	rs370430000	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:179,9:31:188:0.048:2	./.	./.	./.	./.	0/1:182,7:32:189:0.037:2	0/1:190,6:32:196:0.031:2	./.	0/1:182,5:32:187:0.027:2	./.	./.
chr15	72958170	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:178,4:33:182:0.022:2	./.	./.	./.	./.	./.	./.	./.	0/1:178,5:32:183:0.027:2	./.	./.
chr15	72958366	rs200655139	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:32:95:0.042:2	0/1:117,16:31:133:0.120:2
chr15	72958458	rs201322718	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,12:32:61:0.200:2	0/1:47,12:32:59:0.203:2
chr15	72958556	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,37:29:183:0.202:2	./.	./.	0/1:125,31:30:159:0.199:2	./.	./.
chr15	72958604	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:32:137:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	72978531	rs11637927	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:32:9:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	72978552	rs56368716	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:11,13:30:24:0.542:2	0/1:6,11:30:17:0.647:2	./.	./.	./.	./.	./.	./.	./.	0/1:20,12:29:32:0.375:2	0/1:22,24:30:46:0.522:2
chr15	72987588	rs4777527	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:32:28:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,51:31:51:1.00:2
chr15	73002035	rs8033604	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,62:31:62:1.00:2	0/1:0,27:30:27:1.00:2	./.	0/1:0,75:30:75:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,67:30:68:1.00:2	0/1:1,88:31:89:0.989:2	0/1:0,59:31:59:1.00:2	0/1:0,87:30:87:1.00:2
chr15	73023725	rs200113494	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:66,14:23:80:0.175:2	./.	./.	0/1:58,15:18:73:0.205:2	0/1:65,14:16:79:0.177:2	./.	0/1:57,15:17:72:0.208:2	0/1:91,21:19:112:0.188:2	0/1:88,9:18:97:0.093:2	0/1:46,15:23:61:0.246:2	0/1:62,15:24:77:0.195:2
chr15	73023937	rs12914333	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,100:30:100:1.00:2	0/1:0,61:30:61:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,160:30:160:1.00:2	0/1:0,126:30:126:1.00:2	0/1:0,129:30:130:1.00:2	0/1:1,105:30:106:0.991:2	0/1:1,163:30:164:0.994:2	0/1:0,149:31:149:1.00:2	0/1:0,137:31:137:1.00:2	0/1:0,135:30:135:1.00:2
chr15	73027478	rs2277598	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,69:33:69:1.00:2	0/1:1,43:32:44:0.977:2	0/1:0,10:33:10:1.00:2	./.	0/1:38,56:32:94:0.596:2	0/1:47,53:32:100:0.530:2	0/1:1,72:33:73:0.986:2	./.	0/1:54,51:33:105:0.486:2	0/1:2,90:33:92:0.978:2	0/1:0,135:33:135:1.00:2
chr15	73044829	rs75554647	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,12:17:158:0.076:2
chr15	73044863	rs34149613	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,59:29:124:0.476:2	./.	./.	./.	./.	./.	./.	./.
chr15	73044981	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:30:82:0.049:2	./.	./.	./.
chr15	73052840	rs8024644	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,26:32:51:0.510:2	./.	0/1:30,35:33:65:0.538:2	./.	0/1:0,42:32:42:1.00:2	0/1:32,25:33:57:0.439:2	./.	./.
chr15	73052845	rs8023358	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,25:32:47:0.532:2	./.	0/1:28,32:32:60:0.533:2	./.	0/1:0,41:32:41:1.00:2	0/1:26,26:33:52:0.500:2	./.	./.
chr15	73067234	rs11634630	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:31:38:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,36:30:37:1.00:2	0/1:0,49:29:49:1.00:2	0/1:0,57:29:57:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,65:30:65:1.00:2
chr15	73541513	rs3736510	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,21:32:63:0.333:2	0/1:18,11:33:29:0.379:2	0/1:0,11:31:11:1.00:2	0/1:26,24:32:50:0.480:2	0/1:21,27:32:48:0.563:2	./.	0/1:23,23:33:46:0.500:2	0/1:20,24:32:44:0.545:2	0/1:26,22:33:48:0.458:2	0/1:41,21:33:62:0.339:2	0/1:31,39:33:70:0.557:2
chr15	73545732	rs2623989	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,8:30:8:1.00:2	0/1:0,3:24:3:1.00:2	./.	0/1:6,6:28:12:0.500:2	0/1:0,7:30:7:1.00:2	0/1:0,8:24:8:1.00:2	./.	./.	0/1:0,3:35:3:1.00:2	0/1:0,5:26:5:1.00:2	0/1:0,12:29:12:1.00:2
chr15	73562532	rs2680348	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,22:32:39:0.564:2	./.	./.	./.	0/1:22,10:33:32:0.313:2	./.
chr15	73564881	rs1131854	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,15:30:33:0.455:2	0/1:16,16:32:32:0.500:2	0/1:0,7:31:7:1.00:2	0/1:25,28:32:53:0.528:2	0/1:37,19:32:56:0.339:2	./.	0/1:44,13:31:57:0.228:2	0/1:45,33:33:78:0.423:2	0/1:34,25:33:59:0.424:2	0/1:27,24:31:51:0.471:2	0/1:39,28:32:67:0.418:2
chr15	73581522	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:137,4:34:141:0.028:2	./.	./.	./.	./.	./.	./.
chr15	73614834	rs529004	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:31:36:1.00:2	0/1:0,24:29:24:1.00:2	0/1:0,9:31:9:1.00:2	0/1:29,26:30:55:0.473:2	0/1:0,38:29:38:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,49:30:49:1.00:2	0/1:45,22:30:67:0.328:2	0/1:0,66:30:66:1.00:2	0/1:0,60:29:60:1.00:2	0/1:0,44:30:44:1.00:2
chr15	73615786	rs148398509	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:28:16:0.563:2	./.	./.	./.	./.	./.	./.	./.
chr15	73615878	rs117819825	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,6:32:10:0.600:2	./.	./.	./.
chr15	73621946	rs12909882	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:30:10:0.600:2	./.	0/1:53,42:31:95:0.442:2	./.	./.	./.	./.	./.	./.
chr15	73636014	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.	./.	./.
chr15	73660505	rs143090627	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	73766211	rs140303255	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,11:30:50:0.220:2	./.	./.	./.	./.
chr15	73994778	rs11574476	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,53:29:101:0.525:2	./.	./.	./.	./.
chr15	73994806	rs7173448	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,37:32:75:0.493:2	./.	./.	0/1:39,28:33:67:0.418:2	./.	./.
chr15	73994847	rs7173476	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,35:31:53:0.660:2	./.	./.	0/1:29,27:32:56:0.482:2	./.	./.
chr15	73995165	rs111801073	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,77:32:173:0.445:2	./.	./.	0/1:89,64:32:153:0.418:2	./.	./.
chr15	73995173	rs11574479	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,89:31:194:0.459:2	0/1:106,85:30:191:0.445:2	./.	./.	0/1:101,70:32:171:0.409:2	./.	./.
chr15	73995200	rs186688946	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,6:27:151:0.040:2	0/1:106,5:27:111:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	73995391	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,3:32:41:0.073:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	73996066	rs11574483	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,59:31:92:0.648:2	./.	./.	0/1:34,29:31:63:0.460:2	./.	./.
chr15	73996101	rs10083681	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,74:31:138:0.540:2	./.	./.	0/1:45,42:32:87:0.483:2	./.	./.
chr15	73996569	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:33:148:0.027:2	./.	./.
chr15	73996590	rs143255170	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,84:31:181:0.464:2	./.	./.	./.	./.	./.
chr15	73996604	rs150186392	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,4:32:122:0.033:2	./.	./.	./.	./.	0/1:193,5:32:199:0.025:2	./.	./.	./.	./.	./.
chr15	74000729	rs2291012	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,30:32:85:0.353:2	./.	./.	0/1:34,30:34:64:0.469:2	./.	./.
chr15	74001993	rs11552770	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,33:27:86:0.384:2	./.	./.	0/1:59,54:31:113:0.478:2	./.	./.
chr15	74002006	rs3825859	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,25:30:70:0.357:2	./.	./.	./.	./.	./.
chr15	74003533	rs966378	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,31:29:70:0.443:2	./.	./.	0/1:21,27:31:48:0.563:2	./.	./.
chr15	74032783	rs28594180	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:20,20:31:40:0.500:2	0/1:8,12:31:20:0.600:2	./.	0/1:27,34:31:61:0.557:2	./.	./.	0/1:28,21:29:49:0.429:2	0/1:0,46:30:46:1.00:2	0/1:18,16:30:34:0.471:2	0/1:14,13:29:27:0.481:2	0/1:25,18:28:43:0.419:2
chr15	74174064	rs117341216	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,15:33:23:0.652:2	0/1:8,4:31:12:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	74277795	rs10851866	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,19:31:66:0.288:2	0/1:23,11:30:34:0.324:2	0/1:0,6:32:6:1.00:2	0/1:1,35:30:36:0.972:2	0/1:34,18:31:52:0.346:2	0/1:30,21:31:51:0.412:2	0/1:31,33:29:64:0.516:2	./.	0/1:0,40:31:40:1.00:2	0/1:29,7:29:36:0.194:2	0/1:25,15:31:40:0.375:2
chr15	74290474	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,50:31:109:0.459:2	./.	./.	./.	./.	./.	./.
chr15	74328116	rs743580	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:31:5:0.600:2	0/1:0,48:32:48:1.00:2	0/1:32,15:32:47:0.319:2	0/1:13,22:33:35:0.629:2	0/1:26,18:32:44:0.409:2	./.	./.	0/1:20,17:30:38:0.459:2	0/1:37,18:31:55:0.327:2
chr15	74328141	rs743581	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,29:30:29:1.00:2	0/1:14,7:32:21:0.333:2	0/1:8,15:31:23:0.652:2	0/1:19,7:31:26:0.269:2	./.	./.	0/1:13,10:31:23:0.435:2	0/1:26,13:32:39:0.333:2
chr15	74336633	rs5742915	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,14:33:33:0.424:2	0/1:10,13:32:23:0.565:2	0/1:4,3:33:7:0.429:2	0/1:30,27:33:57:0.474:2	0/1:31,17:32:48:0.354:2	0/1:25,21:32:46:0.457:2	0/1:29,19:32:48:0.396:2	0/1:39,25:32:64:0.391:2	0/1:0,43:34:43:1.00:2	0/1:19,13:33:32:0.406:2	./.
chr15	74337218	rs200030114	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:33:114:0.035:2	./.	./.	./.	./.
chr15	74363298	rs368187335	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:31:195:0.026:2	./.	./.	./.	./.	./.
chr15	74363307	rs201661955	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:178,14:30:193:0.073:2	./.	./.	./.	./.	./.	0/1:185,12:30:197:0.061:2	./.
chr15	74363330	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,9:28:196:0.046:2	0/1:177,8:32:185:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	74363378	rs199638289	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,15:28:165:0.092:2	./.	./.	0/1:157,6:29:165:0.037:2	./.	0/1:161,20:27:182:0.110:2	./.	./.
chr15	74363568	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,11:32:106:0.104:2	0/1:108,12:32:120:0.100:2
chr15	74363902	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:176,5:31:181:0.028:2	./.	./.	0/1:181,7:32:188:0.037:2	0/1:191,5:33:196:0.026:2	0/1:181,12:32:194:0.062:2	0/1:184,8:32:192:0.042:2	./.	0/1:177,5:33:182:0.027:2	./.	./.
chr15	74366897	.	C	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:20,4:25:24:0.167:2	./.	0/1:3,3:30:6:0.500:2	./.	0/1:36,6:29:42:0.143:2	0/1:32,8:27:40:0.200:2	0/1:36,4:28:41:0.100:2	./.	./.	0/1:26,6:23:32:0.188:2	0/1:15,7:23:22:0.318:2
chr15	74367045	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,11:33:186:0.059:2	./.	./.	0/1:167,12:30:179:0.067:2
chr15	74367333	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:33:41:0.098:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	74370974	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,13:31:196:0.066:2	./.	./.	./.
chr15	74467796	rs11854957	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,25:32:62:0.403:2	./.	./.	./.	./.	./.	./.
chr15	74467856	rs1052622	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,24:30:25:1.00:2	0/1:0,15:32:15:1.00:2	./.	0/1:0,8:27:9:1.00:2	0/1:17,11:29:28:0.393:2	0/1:0,17:30:18:1.00:2	0/1:1,9:28:10:0.900:2	0/1:0,20:24:20:1.00:2	0/1:0,17:26:18:1.00:2	0/1:0,8:28:8:1.00:2	./.
chr15	74467997	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:149,4:31:153:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr15	74468494	rs3848160	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,6:32:15:0.400:2	./.	./.	./.	./.	./.	./.
chr15	74468766	rs3888004	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,9:32:23:0.391:2	./.	0/1:75,66:32:142:0.468:2	./.	./.	./.	./.	./.	./.
chr15	74468937	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,14:12:98:0.143:2	./.	./.	./.	0/1:53,13:15:66:0.197:2	0/1:54,12:14:66:0.182:2
chr15	74468986	rs13259	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:31:9:0.667:2	./.	0/1:58,67:31:125:0.536:2	./.	./.	./.	./.	./.	./.
chr15	74469097	rs3848161	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,11:33:18:0.611:2	./.	0/1:67,63:32:130:0.485:2	./.	./.	./.	./.	./.	./.
chr15	74473739	rs736118	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,30:31:73:0.411:2
chr15	74476260	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,7:18:75:0.093:2	./.	./.	./.	./.
chr15	74487969	rs971756	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,13:33:40:0.325:2
chr15	74488424	rs11857410	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,12:33:37:0.324:2
chr15	74494599	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,4:32:44:0.091:2	./.	./.	./.	./.	./.	./.	./.
chr15	74560776	rs56107695	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,21:32:50:0.420:2	./.	./.	0/1:25,21:33:46:0.457:2	0/1:31,16:32:47:0.340:2	./.	./.	./.
chr15	74565181	rs79172627	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,21:33:73:0.288:2
chr15	74622533	rs2277603	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:33:10:0.400:2	0/1:4,118:32:122:0.967:2	0/1:74,60:30:134:0.448:2	./.	./.	0/1:81,67:32:148:0.453:2	./.	./.	0/1:61,55:32:116:0.474:2
chr15	74622549	rs2277604	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,54:32:128:0.422:2	./.	./.	./.	0/1:87,69:32:156:0.442:2	./.	./.	./.
chr15	74622678	rs1564782	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,40:31:85:0.471:2	0/1:15,30:31:45:0.667:2	0/1:11,9:30:20:0.450:2	0/1:1,91:30:92:0.989:2	0/1:81,50:30:131:0.382:2	0/1:49,43:30:92:0.467:2	./.	0/1:75,55:31:130:0.423:2	0/1:43,59:32:102:0.578:2	0/1:43,30:30:73:0.411:2	0/1:0,88:31:88:1.00:2
chr15	74637631	rs117641050	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,16:30:31:0.516:2	./.	./.	./.	./.	./.	./.
chr15	74703022	rs2075592	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,29:32:63:0.460:2	./.	./.	./.	./.	./.	./.	./.
chr15	74703929	rs741761	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,12:31:27:0.444:2	0/1:14,8:30:22:0.364:2	0/1:0,5:31:5:1.00:2	0/1:1,51:31:52:0.981:2	0/1:31,37:31:68:0.544:2	./.	./.	0/1:45,37:31:82:0.451:2	./.	./.	./.
chr15	74706943	rs1046146	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,82:29:165:0.497:2	./.	./.	./.	./.	./.	./.	./.
chr15	74709975	rs2075589	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,4:33:10:0.400:2	0/1:2,5:32:7:0.714:2	./.	0/1:9,5:32:14:0.357:2	0/1:13,11:32:24:0.458:2	./.	./.	0/1:9,7:32:16:0.438:2	./.	./.	./.
chr15	74710593	rs28362912	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,40:29:42:0.976:2	0/1:0,27:31:27:1.00:2	0/1:0,8:27:8:1.00:2	0/1:0,45:30:45:1.00:2	0/1:1,33:29:34:0.971:2	0/1:1,66:29:67:0.985:2	0/1:14,11:31:25:0.440:2	0/1:0,70:29:70:1.00:2	0/1:1,53:28:54:0.981:2	0/1:0,35:29:35:1.00:2	0/1:28,26:28:54:0.481:2
chr15	74710602	rs201477259	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,16:30:35:0.457:2	./.	./.	./.	./.
chr15	74836316	rs8043032	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:58,49:32:107:0.458:2	0/1:25,16:32:41:0.390:2	./.	0/1:5,78:32:83:0.940:2	./.	./.	0/1:142,8:32:150:0.053:2	0/1:64,59:32:124:0.480:2	./.	./.	./.
chr15	74836319	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,11:33:152:0.072:2	./.	./.	./.	./.
chr15	74836434	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:33:134:0.030:2	./.
chr15	74865214	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:34:135:0.030:2	./.	./.
chr15	74865222	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:33:148:0.027:2	./.	./.	./.	./.	./.
chr15	74883672	rs199931788	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,5:33:67:0.075:2	./.	./.	./.	./.	./.	./.	./.
chr15	74888014	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,69:32:140:0.493:2	./.	./.	./.	./.	./.
chr15	74888032	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,6:32:90:0.067:2
chr15	74927869	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:128,4:33:132:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr15	75012985	rs1048943	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,26:30:53:0.491:2	./.	./.	./.	./.	./.	./.	./.
chr15	75012987	rs1799814	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,25:31:53:0.472:2	./.	./.	./.	0/1:47,42:31:89:0.472:2	./.	./.	./.
chr15	75015331	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:32:89:0.045:2
chr15	75043611	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:32:141:0.028:2	./.	./.	./.	./.
chr15	75045582	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,4:33:97:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr15	75047426	rs2470890	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,16:31:16:1.00:2	0/1:0,9:32:9:1.00:2	./.	0/1:9,11:31:20:0.550:2	0/1:8,9:30:17:0.529:2	0/1:0,13:30:13:1.00:2	0/1:11,14:31:25:0.560:2	0/1:0,15:31:15:1.00:2	0/1:8,9:32:17:0.529:2	0/1:0,12:29:12:1.00:2	./.
chr15	75093422	rs33991421	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,57:29:145:0.393:2	./.	./.	./.	./.	./.	./.
chr15	75113023	rs145422132	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,25:31:41:0.610:2	./.
chr15	75117912	rs79217743	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:12,8:31:20:0.400:2	0/1:2,5:31:7:0.714:2	./.	./.	0/1:15,24:30:39:0.615:2	./.	./.	./.	./.	./.	0/1:9,4:30:13:0.308:2
chr15	75129594	rs2290573	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,44:30:95:0.463:2	0/1:33,35:31:68:0.515:2	0/1:2,79:30:81:0.975:2	0/1:30,49:30:79:0.620:2	0/1:3,107:31:110:0.973:2	0/1:39,57:32:96:0.594:2	./.	./.
chr15	75130093	rs12898397	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,24:31:24:1.00:2	0/1:30,21:33:51:0.412:2	0/1:2,38:31:40:0.950:2	0/1:30,39:31:69:0.565:2	0/1:0,40:33:40:1.00:2	0/1:19,21:34:40:0.525:2	./.	./.
chr15	75130857	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:117,4:31:121:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr15	75131661	rs4886615	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,9:29:37:0.243:2	0/1:11,12:28:23:0.522:2	0/1:1,4:30:5:0.800:2	0/1:0,37:29:37:1.00:2	0/1:49,16:28:65:0.246:2	0/1:0,43:29:43:1.00:2	0/1:31,24:31:55:0.436:2	0/1:0,51:29:51:1.00:2	0/1:41,4:29:45:0.089:2	0/1:20,30:30:50:0.600:2	./.
chr15	75131959	rs936227	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:29:3:1.00:2	0/1:0,21:31:21:1.00:2	0/1:15,13:32:28:0.464:2	0/1:0,8:30:8:1.00:2	0/1:10,8:33:18:0.444:2	0/1:0,38:33:38:1.00:2	0/1:10,7:33:17:0.412:2	./.	./.
chr15	75135447	rs2290574	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.
chr15	75146371	rs77456595	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,37:29:72:0.514:2
chr15	75185513	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:31:142:0.028:2	./.	./.
chr15	75185657	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:165,4:32:169:0.024:2	./.	./.	./.	./.	./.	./.
chr15	75189930	rs1130741	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,8:32:18:0.444:2	0/1:3,184:33:187:0.984:2	./.	0/1:1,187:32:188:0.995:2	0/1:113,73:32:187:0.392:2	0/1:1,185:32:186:0.995:2	0/1:90,63:34:153:0.412:2	./.	./.
chr15	75248367	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,3:31:28:0.107:2	./.	./.	./.	./.	./.
chr15	75249419	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,16:31:36:0.444:2	./.
chr15	75305040	rs7174129	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,53:30:121:0.438:2	./.	./.
chr15	75336729	rs17845415	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:31:53:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,68:33:68:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,83:32:83:1.00:2	0/1:1,66:33:67:0.985:2	0/1:0,39:33:39:1.00:2	0/1:30,23:32:53:0.434:2
chr15	75498548	rs1466663	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,98:29:98:1.00:2	0/1:0,54:29:54:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,179:29:179:1.00:2	0/1:0,180:29:180:1.00:2	0/1:0,171:30:172:1.00:2	0/1:0,175:30:175:1.00:2	0/1:0,173:30:173:1.00:2	0/1:0,146:30:146:1.00:2	0/1:0,146:30:146:1.00:2	0/1:0,147:30:147:1.00:2
chr15	75498744	rs1873379	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,7:33:8:0.875:2	0/1:44,53:33:97:0.546:2	./.	./.	0/1:48,41:32:89:0.461:2	./.	0/1:35,41:33:76:0.539:2	0/1:31,23:33:54:0.426:2	./.
chr15	75499602	rs12591506	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,5:28:5:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,32:32:32:1.00:2	0/1:1,47:32:48:0.979:2	0/1:1,46:31:47:0.979:2	0/1:0,28:32:28:1.00:2	0/1:1,42:31:43:0.977:2	0/1:0,32:31:32:1.00:2
chr15	75499619	rs11072531	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:29:42:1.00:2	0/1:0,24:28:24:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,49:29:49:1.00:2	0/1:0,80:28:80:1.00:2	0/1:0,39:30:39:1.00:2	0/1:1,54:29:55:0.982:2	0/1:0,59:30:59:1.00:2	0/1:0,35:31:35:1.00:2	0/1:1,48:29:49:0.980:2	0/1:1,36:29:37:0.973:2
chr15	75499807	rs140176050	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,51:30:90:0.567:2	./.	./.	./.	./.	./.
chr15	75499861	rs11072532	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:31:48:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,6:28:6:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,42:31:42:1.00:2	0/1:1,58:30:59:0.983:2	0/1:0,58:32:58:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,37:31:37:1.00:2
chr15	75499995	rs28509789	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,25:31:52:0.481:2	0/1:32,20:30:52:0.385:2	./.	./.	0/1:26,40:29:66:0.606:2	0/1:17,20:29:38:0.541:2	0/1:11,11:29:22:0.500:2	./.
chr15	75500153	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,15:28:32:0.469:2	./.	./.	./.	./.	./.	./.
chr15	75503147	rs3743211	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:31:22:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,49:32:50:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,34:31:34:1.00:2
chr15	75579039	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:177,21:31:198:0.106:2	0/1:159,34:31:193:0.176:2	0/1:168,25:32:193:0.130:2	./.	./.	./.	./.	0/1:173,24:32:197:0.122:2	./.
chr15	75579086	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,19:33:196:0.097:2	./.	./.	./.
chr15	75583019	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,14:30:190:0.074:2	./.	./.	0/1:171,12:33:183:0.066:2
chr15	75583167	.	G	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,4:25:24:0.167:2	./.	./.	0/1:42,13:25:55:0.236:2	0/1:33,8:26:41:0.195:2	0/1:40,7:31:47:0.149:2	0/1:43,8:27:52:0.157:2	0/1:30,5:26:35:0.143:2	0/1:35,4:31:39:0.103:2	0/1:27,5:26:32:0.156:2
chr15	75584896	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,5:30:72:0.069:2	./.	./.	./.	./.	./.	./.
chr15	75584931	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:26:61:0.066:2	./.	./.	./.	./.
chr15	75586165	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr15	75586499	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,5:32:87:0.057:2	0/1:132,9:34:141:0.064:2
chr15	75586591	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:33:70:0.057:2	0/1:63,5:32:68:0.074:2
chr15	75586719	rs199700923	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,49:31:178:0.275:2	./.	./.	./.
chr15	75586737	rs200428716	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:150,19:31:170:0.112:2	./.	./.	./.	./.	./.	0/1:131,18:31:149:0.121:2	./.
chr15	75586760	rs201356608	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,21:32:92:0.228:2	0/1:29,14:31:43:0.326:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	75628414	rs114064595	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,34:32:63:0.540:2	./.	0/1:34,30:31:64:0.469:2	./.	./.
chr15	75641494	rs5745906	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,10:27:15:0.667:2	./.	./.	./.	./.	./.
chr15	75650836	rs1128933	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,36:30:36:1.00:2	0/1:0,13:29:13:1.00:2	0/1:1,3:31:4:0.750:2	./.	0/1:31,21:30:52:0.404:2	0/1:12,25:30:37:0.676:2	0/1:29,25:31:54:0.463:2	./.	0/1:15,25:32:40:0.625:2	0/1:22,11:32:33:0.333:2	0/1:0,20:30:20:1.00:2
chr15	75653431	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,35:29:78:0.449:2	./.
chr15	75801281	rs201985023	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,18:31:41:0.439:2	./.	./.	./.	./.
chr15	75809635	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:30:76:0.053:2	./.	./.	./.	./.	./.
chr15	75909803	rs11547316	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,75:30:194:0.387:2	./.	./.	0/1:105,86:30:191:0.450:2	./.	./.
chr15	75932129	rs13737	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,12:29:31:0.387:2	./.	0/1:0,37:32:37:1.00:2	0/1:10,10:33:20:0.500:2	./.	./.
chr15	75941491	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:150,4:33:155:0.026:2	./.	./.	./.	./.	./.	./.
chr15	75941560	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,5:31:138:0.036:2	./.	./.	./.	./.	./.
chr15	75969335	rs77237106	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,36:32:36:1.00:2	./.	./.	0/1:8,13:31:21:0.619:2	0/1:18,11:30:29:0.379:2	./.	0/1:10,19:32:29:0.655:2	./.
chr15	75970070	rs8023621	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:45,46:29:91:0.505:2	0/1:20,18:31:38:0.474:2	./.	./.	0/1:56,80:30:136:0.588:2	0/1:66,66:30:132:0.500:2	0/1:69,65:30:134:0.485:2	0/1:61,99:30:160:0.619:2	0/1:40,55:30:96:0.579:2	0/1:46,59:30:105:0.562:2	0/1:53,48:30:101:0.475:2
chr15	75975275	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:30:103:0.039:2	./.	./.	./.
chr15	75977920	rs62027240	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,10:29:27:0.370:2	0/1:8,5:32:13:0.385:2	./.	./.	0/1:35,24:30:59:0.407:2	0/1:0,39:30:39:1.00:2	0/1:19,8:29:27:0.296:2	0/1:29,19:30:48:0.396:2	0/1:1,29:31:30:0.967:2	0/1:14,14:31:28:0.500:2	0/1:21,10:31:31:0.323:2
chr15	75979782	rs8030131	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:47,34:32:81:0.420:2	0/1:16,26:33:42:0.619:2	./.	./.	0/1:91,73:31:164:0.445:2	0/1:4,120:31:124:0.968:2	0/1:92,68:31:160:0.425:2	0/1:66,74:31:142:0.529:2	0/1:0,110:32:111:1.00:2	0/1:43,40:31:83:0.482:2	0/1:36,32:31:68:0.471:2
chr15	75980112	rs4414463	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:47,24:28:71:0.338:2	0/1:11,21:28:32:0.656:2	./.	./.	0/1:68,42:29:110:0.382:2	0/1:1,83:28:84:0.988:2	0/1:80,39:28:119:0.328:2	0/1:59,50:27:109:0.459:2	0/1:4,75:28:79:0.949:2	0/1:46,34:28:80:0.425:2	0/1:29,24:27:53:0.453:2
chr15	75980585	rs199534811	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,50:32:81:0.617:2	./.	./.	./.	./.
chr15	75980704	rs141657014	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,52:32:115:0.452:2	./.	./.	./.	./.	./.
chr15	75981206	rs141088377	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,26:30:44:0.591:2	./.	./.	./.	./.
chr15	75981507	rs12900539	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:31:10:0.400:2	./.	./.	./.	./.	0/1:0,11:32:11:1.00:2	./.	0/1:3,4:31:7:0.571:2	0/1:0,7:31:7:1.00:2	0/1:10,4:31:14:0.286:2	./.
chr15	75981944	rs72732868	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:148,7:29:155:0.045:2	./.	./.	./.	./.	./.	./.
chr15	75981945	rs72732869	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:150,7:26:157:0.045:2	./.	./.	./.	./.	./.	./.
chr15	75981972	rs77164756	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:139,12:26:151:0.079:2	./.	./.	./.	./.	./.	./.
chr15	75981976	rs200493777	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,5:27:139:0.036:2	0/1:136,14:29:151:0.093:2	./.	0/1:151,7:28:158:0.044:2	./.	./.	./.	./.
chr15	75982041	rs79474855	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,66:30:186:0.355:2	./.	./.	./.
chr15	75982058	rs147116973	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,13:31:123:0.106:2	./.	./.	./.	0/1:148,21:31:169:0.124:2	./.	0/1:63,15:31:78:0.192:2	./.
chr15	75982072	rs77681934	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:82,8:31:90:0.089:2	0/1:42,7:30:49:0.143:2	0/1:8,4:29:12:0.333:2	./.	0/1:89,61:30:151:0.407:2	./.	./.	./.	./.	./.	./.
chr15	75982085	rs79463888	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,9:32:80:0.113:2	0/1:37,6:33:43:0.140:2	0/1:5,4:26:9:0.444:2	0/1:106,11:31:117:0.094:2	0/1:80,45:31:125:0.360:2	./.	0/1:65,33:31:98:0.337:2	./.	0/1:76,14:32:90:0.156:2	./.	0/1:57,7:30:64:0.109:2
chr15	75982185	rs77341302	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,18:32:93:0.194:2	./.	./.	0/1:119,36:29:155:0.232:2	./.	./.	./.
chr15	75982186	rs199819221	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,19:32:96:0.198:2	./.	./.	./.	./.	./.	./.
chr15	75982227	rs78884605	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,43:32:94:0.457:2	./.	0/1:133,41:31:174:0.236:2	0/1:38,33:33:71:0.465:2	./.	./.
chr15	75982239	rs148229217	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,34:29:84:0.405:2	./.	./.	0/1:39,29:31:69:0.426:2	./.	./.
chr15	75982271	rs141212136	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,12:30:103:0.117:2	./.	./.	./.
chr15	75982275	rs146234778	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,10:27:104:0.096:2	./.	./.	./.
chr15	75982428	rs7182906	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:34,33:31:67:0.493:2	0/1:27,21:31:48:0.438:2	./.	./.	0/1:61,62:29:123:0.504:2	0/1:46,53:29:99:0.535:2	0/1:50,57:30:108:0.533:2	0/1:62,74:30:137:0.544:2	0/1:36,55:31:91:0.604:2	0/1:38,44:30:83:0.537:2	0/1:40,54:30:94:0.574:2
chr15	75982492	rs76827801	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,25:32:189:0.132:2	./.	./.	./.
chr15	75982513	rs75059368	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,33:31:189:0.175:2	./.	./.	./.
chr15	75982581	rs76037675	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,52:32:189:0.275:2	./.	./.	./.
chr15	75982666	rs150241616	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,37:32:126:0.294:2	./.	./.	./.
chr15	75985469	rs112660485	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,48:32:195:0.246:2	./.	./.	./.
chr15	76017452	rs55905564	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:32:4:1.00:2	0/1:12,28:33:40:0.700:2	0/1:31,14:33:45:0.311:2	./.	0/1:24,21:32:45:0.467:2	0/1:40,32:32:72:0.444:2	./.	0/1:0,40:32:40:1.00:2	0/1:21,21:32:43:0.500:2
chr15	76136768	rs72734531	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,14:32:21:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	76152222	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:32:124:0.032:2	./.	./.	./.	./.
chr15	76152260	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,6:32:197:0.030:2	./.	./.	./.	./.
chr15	76191802	rs335689	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,32:29:32:1.00:2	0/1:0,6:31:6:1.00:2	./.	0/1:0,28:30:28:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,23:30:23:1.00:2
chr15	76449089	rs186201023	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,36:32:81:0.444:2	./.	./.	./.	./.	./.	./.	./.
chr15	76496232	rs937732	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,47:31:47:1.00:2	0/1:0,13:31:13:1.00:2	./.	./.	./.	0/1:28,31:30:59:0.525:2	./.	./.	./.	0/1:18,20:31:38:0.526:2	./.
chr15	76496340	rs937733	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,9:33:10:0.900:2	0/1:0,6:31:6:1.00:2	./.	./.	./.	0/1:7,14:30:21:0.667:2	./.	./.	./.	0/1:7,8:29:15:0.533:2	./.
chr15	76523736	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:32:61:0.066:2	./.	./.
chr15	76578762	rs1801591	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,76:30:199:0.382:2	./.	0/1:92,101:31:193:0.523:2	./.
chr15	76584792	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,6:33:163:0.037:2	./.	./.	./.
chr15	76603679	rs62027051	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,6:31:8:0.750:2	./.	./.	./.	./.	./.
chr15	76630303	rs4636879	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:27:34:1.00:2	0/1:0,27:27:27:1.00:2	0/1:0,7:27:7:1.00:2	0/1:0,69:27:69:1.00:2	0/1:0,54:26:55:1.00:2	0/1:0,81:27:81:1.00:2	./.	0/1:54,33:26:87:0.379:2	0/1:42,13:28:55:0.236:2	0/1:36,20:28:56:0.357:2	0/1:0,28:26:28:1.00:2
chr15	76630717	rs62028361	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,10:31:10:1.00:2	./.	0/1:5,10:31:15:0.667:2	./.	./.
chr15	76696889	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,43:30:113:0.381:2	./.	./.
chr15	76726465	rs1607017	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,84:31:87:0.966:2	0/1:0,48:31:48:1.00:2	./.	./.	./.	0/1:54,41:30:95:0.432:2	./.	0/1:61,49:30:110:0.445:2	./.	./.	./.
chr15	76994111	rs117552750	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,23:31:49:0.469:2	./.	./.	0/1:15,29:31:44:0.659:2
chr15	77067254	rs186407258	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,38:33:70:0.543:2	./.	./.	./.	./.
chr15	77176158	rs3812908	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,49:33:119:0.412:2	0/1:28,34:32:62:0.548:2	./.	./.	./.	0/1:77,43:32:120:0.358:2	./.	0/1:66,66:32:132:0.500:2	./.	./.	./.
chr15	77176200	rs3812909	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,33:31:83:0.398:2	0/1:21,28:32:49:0.571:2	./.	./.	./.	0/1:48,26:29:74:0.351:2	./.	0/1:49,58:31:107:0.542:2	./.	./.	./.
chr15	77224726	rs144252373	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,24:32:50:0.480:2
chr15	77344793	rs11737	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:37,38:32:75:0.507:2	0/1:23,24:32:47:0.511:2	./.	0/1:45,41:32:86:0.477:2	0/1:1,89:31:90:0.989:2	0/1:44,48:31:92:0.522:2	0/1:53,54:31:107:0.505:2	0/1:41,64:32:105:0.610:2	0/1:40,46:33:86:0.535:2	0/1:2,75:32:77:0.974:2	./.
chr15	77406644	rs34004337	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,44:32:91:0.484:2	./.	./.	./.	./.
chr15	77407114	rs1867780	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,12:31:22:0.545:2	./.	./.
chr15	77450964	rs12909704	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:60,56:32:116:0.483:2	0/1:34,44:32:78:0.564:2	./.	0/1:48,64:32:112:0.571:2	0/1:2,80:31:83:0.976:2	0/1:77,59:31:136:0.434:2	./.	./.	0/1:68,70:32:138:0.507:2	0/1:2,94:32:96:0.979:2	./.
chr15	77471894	rs34885462	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,49:30:92:0.533:2	./.	./.	./.
chr15	77472871	rs10519162	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,74:30:145:0.514:2	0/1:59,39:31:98:0.398:2	0/1:1,15:30:16:0.938:2	0/1:95,69:30:164:0.421:2	./.	./.	./.	./.	./.	./.	./.
chr15	77906478	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:32:159:0.025:2	./.	./.
chr15	77906596	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:33:108:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	77907062	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:30:81:0.049:2	./.	./.	./.	./.	./.
chr15	77907139	rs61737308	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,28:28:51:0.549:2
chr15	77907145	rs3743481	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:29,29:30:58:0.500:2	0/1:16,17:30:33:0.515:2	./.	0/1:46,39:29:85:0.459:2	./.	0/1:57,40:28:97:0.412:2	./.	0/1:3,89:29:92:0.967:2	./.	./.	0/1:0,64:30:64:1.00:2
chr15	77907535	rs2271396	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:63,44:32:107:0.411:2	0/1:33,25:32:59:0.431:2	./.	0/1:0,132:32:132:1.00:2	./.	0/1:73,59:32:132:0.447:2	0/1:85,61:33:146:0.418:2	0/1:0,150:32:150:1.00:2	0/1:0,131:34:131:1.00:2	0/1:70,55:33:125:0.440:2	0/1:0,106:33:106:1.00:2
chr15	77907775	rs2271397	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:57,52:33:109:0.477:2	0/1:33,36:33:69:0.522:2	./.	0/1:1,164:33:165:0.994:2	./.	0/1:106,79:32:185:0.427:2	0/1:128,65:33:193:0.337:2	0/1:0,192:33:192:1.00:2	0/1:0,153:34:153:1.00:2	0/1:81,57:33:138:0.413:2	0/1:0,139:32:139:1.00:2
chr15	77907784	rs2271398	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:59,49:32:108:0.454:2	0/1:32,32:32:64:0.500:2	./.	0/1:1,158:31:159:0.994:2	./.	0/1:108,76:31:184:0.413:2	0/1:125,60:32:185:0.324:2	0/1:0,186:31:186:1.00:2	0/1:1,152:33:153:0.993:2	0/1:81,64:32:145:0.441:2	0/1:0,134:31:134:1.00:2
chr15	78290563	rs144284088	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,9:31:86:0.105:2	./.	./.	./.	./.	./.	./.	./.
chr15	78290635	rs200408968	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,5:30:92:0.055:2	./.	0/1:64,5:28:69:0.072:2	./.
chr15	78290654	.	G	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,16:28:103:0.155:2	./.	0/1:17,5:31:22:0.227:2	0/1:121,5:30:126:0.040:2	0/1:83,11:28:94:0.117:2	./.	./.	0/1:81,5:26:86:0.058:2	0/1:73,6:31:79:0.076:2	0/1:61,8:29:69:0.116:2	0/1:63,13:27:76:0.171:2
chr15	78295765	rs138988358	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,52:29:126:0.416:2
chr15	78316738	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,4:33:109:0.037:2	./.	./.	./.	./.	./.	./.	./.
chr15	78337303	rs61732053	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,18:32:24:0.750:2	./.	./.
chr15	78369815	rs9047	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:29:15:0.533:2	./.	./.	./.	./.	0/1:14,16:30:30:0.533:2	./.	./.	./.	./.	./.
chr15	78390414	rs2289524	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,39:28:75:0.520:2	0/1:27,17:26:44:0.386:2	./.	0/1:38,42:28:80:0.525:2	0/1:48,67:27:115:0.583:2	0/1:46,41:28:87:0.471:2	0/1:51,47:27:98:0.480:2	./.	0/1:0,81:28:81:1.00:2	0/1:0,55:27:55:1.00:2	0/1:43,28:25:71:0.394:2
chr15	78390909	rs12593575	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,25:32:45:0.556:2	0/1:18,11:31:29:0.379:2	0/1:10,15:32:25:0.600:2	./.	./.	0/1:11,13:33:24:0.542:2	0/1:11,17:33:28:0.607:2	./.
chr15	78393660	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,4:30:17:0.235:2	./.	./.	./.	./.
chr15	78398146	rs10456	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:38,30:31:69:0.441:2	0/1:27,16:32:43:0.372:2	./.	./.	./.	./.	0/1:108,85:32:193:0.440:2	0/1:72,81:32:153:0.529:2	0/1:0,98:32:98:1.00:2	0/1:39,43:32:82:0.524:2	./.
chr15	78398254	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:31:137:0.029:2	./.	./.	./.
chr15	78401620	rs77370542	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,48:32:104:0.462:2	./.	./.	./.	./.	./.	./.	./.
chr15	78441769	rs11555541	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:33:4:1.00:2
chr15	78454050	rs61752770	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,44:31:86:0.512:2	./.	./.	./.	./.	0/1:66,48:32:114:0.421:2	./.
chr15	78454623	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:149,4:32:153:0.026:2	./.	./.	./.	./.	./.	./.
chr15	78466127	rs2304824	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:47,27:32:74:0.365:2	0/1:28,17:32:45:0.378:2	./.	0/1:61,57:32:118:0.483:2	0/1:52,55:31:107:0.514:2	0/1:0,89:32:89:1.00:2	0/1:49,54:32:103:0.524:2	0/1:90,4:33:94:0.043:2	./.	./.	0/1:1,86:32:87:0.989:2
chr15	78466781	rs17850483	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,41:31:93:0.441:2	./.	./.	0/1:56,46:32:102:0.451:2	./.	./.	./.	./.
chr15	78471110	rs17850484	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,44:30:99:0.444:2	./.	./.	0/1:67,73:30:140:0.521:2	./.	./.	./.	./.
chr15	78471954	rs17479031	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,35:31:79:0.443:2	./.	./.	0/1:28,48:32:76:0.632:2	./.	./.	./.	./.
chr15	78500420	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:34:134:0.030:2	./.	./.	./.
chr15	78562867	rs61752771	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,14:30:25:0.560:2	./.	./.	./.	./.	./.
chr15	78565478	rs7163689	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:93,71:32:164:0.433:2	0/1:61,42:32:103:0.408:2	./.	0/1:100,66:32:166:0.398:2	0/1:70,54:31:124:0.435:2	0/1:73,68:31:141:0.482:2	0/1:1,96:32:97:0.990:2	0/1:89,79:31:169:0.470:2	0/1:0,170:32:170:1.00:2	./.	./.
chr15	78567853	rs967821	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,8:30:15:0.533:2	0/1:69,34:30:103:0.330:2	./.	./.	./.	./.	./.	0/1:0,52:31:52:1.00:2	./.
chr15	78581969	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,4:29:81:0.049:2	./.	./.	./.	./.	./.	./.	./.
chr15	78585106	rs2280364	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,33:31:72:0.458:2	./.	./.	./.	./.
chr15	78632830	rs1127472	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:32:55:1.00:2	0/1:0,32:32:32:1.00:2	0/1:5,7:33:12:0.583:2	0/1:54,37:33:91:0.407:2	0/1:77,41:32:118:0.347:2	0/1:2,103:32:105:0.981:2	0/1:65,47:32:112:0.420:2	./.	0/1:60,35:32:95:0.368:2	0/1:0,63:31:63:1.00:2	0/1:0,49:31:49:1.00:2
chr15	78633419	rs151297065	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,20:28:42:0.476:2	./.	./.	./.	./.	./.
chr15	78633595	rs2139440	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:31:57:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,64:33:64:1.00:2	0/1:65,39:31:104:0.375:2	0/1:0,79:32:79:1.00:2	0/1:44,24:33:68:0.353:2	0/1:60,50:32:110:0.455:2	0/1:41,21:33:62:0.339:2	0/1:0,50:33:50:1.00:2	0/1:0,50:31:50:1.00:2
chr15	78758677	rs2958720	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:32:49:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,51:33:51:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,53:32:53:1.00:2
chr15	78762900	rs200887475	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,31:32:87:0.356:2	./.	./.	./.	./.
chr15	78780104	rs2230940	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,163:33:163:1.00:2	0/1:1,115:32:116:0.991:2	0/1:0,17:32:17:1.00:2	0/1:0,165:32:165:1.00:2	0/1:0,142:32:142:1.00:2	0/1:0,171:32:171:1.00:2	0/1:0,154:33:154:1.00:2	0/1:0,167:33:167:1.00:2	0/1:0,171:34:171:1.00:2	0/1:0,183:33:183:1.00:2	0/1:0,164:33:164:1.00:2
chr15	78789488	rs13180	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,55:33:55:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,102:32:102:1.00:2	0/1:29,42:32:71:0.592:2	0/1:60,34:32:94:0.362:2	0/1:1,45:32:46:0.978:2	0/1:64,57:32:121:0.471:2	0/1:0,122:33:122:1.00:2	0/1:64,42:33:106:0.396:2	0/1:0,109:33:109:1.00:2
chr15	78825562	rs12906951	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:29,19:32:48:0.396:2	0/1:21,9:32:30:0.300:2	./.	./.	0/1:20,22:31:42:0.524:2	0/1:33,37:31:70:0.529:2	./.	./.	0/1:47,33:32:80:0.413:2	./.	./.
chr15	78825917	rs3885951	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:55,52:32:107:0.486:2	0/1:28,39:32:67:0.582:2	./.	0/1:38,46:32:84:0.548:2	0/1:48,51:32:99:0.515:2	./.	0/1:40,29:33:69:0.420:2	./.	0/1:53,54:33:107:0.505:2	./.	./.
chr15	78836598	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,53:29:126:0.421:2	./.	./.	./.	./.	./.
chr15	78837262	rs11551774	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	78841220	rs8053	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,38:28:89:0.427:2	0/1:32,23:28:55:0.418:2	0/1:9,4:28:13:0.308:2	0/1:0,84:28:84:1.00:2	0/1:44,22:28:67:0.333:2	0/1:33,34:28:67:0.507:2	0/1:0,63:26:63:1.00:2	0/1:0,87:27:87:1.00:2	0/1:51,38:28:89:0.427:2	0/1:1,72:27:73:0.986:2	0/1:0,89:28:89:1.00:2
chr15	78882925	rs16969968	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,19:32:49:0.388:2	0/1:27,9:32:36:0.250:2	0/1:1,10:32:11:0.909:2	0/1:1,56:31:57:0.982:2	0/1:25,21:32:46:0.457:2	0/1:17,24:31:41:0.585:2	0/1:1,44:31:45:0.978:2	0/1:38,33:30:71:0.465:2	0/1:41,28:33:69:0.406:2	0/1:26,14:31:40:0.350:2	0/1:2,75:31:77:0.974:2
chr15	78894201	rs146400389	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:120,5:30:125:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr15	78894214	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,5:31:123:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr15	78894339	rs1051730	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,59:30:113:0.527:2	0/1:54,47:31:101:0.465:2	0/1:15,9:31:24:0.375:2	0/1:1,179:30:180:0.994:2	0/1:105,46:29:151:0.305:2	0/1:106,73:30:179:0.408:2	0/1:4,141:30:145:0.972:2	0/1:100,63:30:163:0.387:2	0/1:99,95:31:194:0.490:2	0/1:86,84:31:170:0.494:2	0/1:0,177:30:177:1.00:2
chr15	78909452	rs3743075	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:0,34:32:34:1.00:2	./.	0/1:2,53:32:55:0.964:2	0/1:29,25:31:54:0.463:2	0/1:16,20:32:36:0.556:2	0/1:1,58:32:59:0.983:2	0/1:30,27:32:57:0.474:2	0/1:38,26:33:64:0.406:2	0/1:0,43:33:43:1.00:2	0/1:0,64:32:64:1.00:2
chr15	78911181	rs8040868	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:32:53:1.00:2	0/1:0,25:32:25:1.00:2	0/1:4,7:30:11:0.636:2	0/1:0,63:33:63:1.00:2	0/1:53,43:32:96:0.448:2	0/1:35,36:33:71:0.507:2	0/1:7,75:32:82:0.915:2	0/1:43,48:32:91:0.527:2	0/1:42,21:33:63:0.333:2	0/1:28,34:31:62:0.548:2	0/1:1,59:32:60:0.983:2
chr15	78911230	rs8192475	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,20:32:38:0.526:2	0/1:18,10:32:28:0.357:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	78921602	rs56235003	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	78921762	rs3743072	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,94:32:177:0.531:2	./.	./.	./.
chr15	78922229	rs56218866	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,33:27:67:0.493:2	./.	./.	./.
chr15	78923505	rs12914008	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,45:31:97:0.464:2	0/1:20,20:31:40:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	79051771	rs200891805	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:30:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	79054900	rs7495616	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:32:18:1.00:2	0/1:0,8:34:8:1.00:2	0/1:0,2:34:2:1.00:2	0/1:0,23:33:23:1.00:2	0/1:29,15:32:44:0.341:2	0/1:40,17:32:57:0.298:2	0/1:33,11:33:44:0.250:2	0/1:52,35:33:87:0.402:2	0/1:0,14:32:14:1.00:2	0/1:1,36:32:37:0.973:2	0/1:0,13:32:13:1.00:2
chr15	79057989	rs200769684	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,4:32:25:0.160:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	79058013	rs2929155	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,31:31:31:1.00:2	0/1:0,14:30:14:1.00:2	./.	0/1:0,13:29:13:1.00:2	0/1:22,3:30:25:0.120:2	0/1:28,8:28:36:0.222:2	./.	0/1:24,21:30:45:0.467:2	0/1:0,16:32:16:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,7:31:7:1.00:2
chr15	79058090	rs2929158	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,4:26:18:0.222:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	79058179	rs200287947	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,17:32:38:0.447:2	0/1:17,5:32:22:0.227:2	0/1:2,4:32:6:0.667:2	0/1:26,6:32:32:0.188:2	0/1:13,6:31:19:0.316:2	0/1:27,3:31:30:0.100:2	0/1:13,3:33:16:0.188:2	./.	0/1:25,9:33:34:0.265:2	0/1:22,11:31:33:0.333:2	0/1:6,6:32:12:0.500:2
chr15	79058213	rs201951140	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,16:27:46:0.348:2	./.	./.	./.	./.	./.	./.
chr15	79058245	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,8:27:86:0.093:2	./.	0/1:87,11:30:98:0.112:2	./.	./.	./.
chr15	79058298	rs11630236	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,93:32:126:0.738:2	0/1:17,35:32:52:0.673:2	0/1:9,11:33:20:0.550:2	0/1:39,111:33:150:0.740:2	0/1:106,36:32:142:0.254:2	0/1:81,66:33:147:0.449:2	0/1:108,40:34:148:0.270:2	./.	0/1:77,81:33:158:0.513:2	0/1:120,48:33:168:0.286:2	0/1:52,68:32:120:0.567:2
chr15	79058307	rs200436984	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:103,29:29:133:0.220:2	0/1:37,14:32:51:0.275:2	0/1:12,9:31:21:0.429:2	0/1:118,36:30:154:0.234:2	0/1:124,17:30:141:0.121:2	0/1:126,19:28:145:0.131:2	0/1:110,40:30:150:0.267:2	0/1:147,21:31:168:0.125:2	0/1:136,27:31:166:0.166:2	0/1:146,22:30:169:0.131:2	0/1:104,20:28:125:0.161:2
chr15	79058317	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:99,27:33:126:0.214:2	0/1:38,12:31:50:0.240:2	0/1:12,7:32:19:0.368:2	0/1:117,28:32:145:0.193:2	0/1:89,53:30:142:0.373:2	0/1:123,19:32:142:0.134:2	0/1:106,35:32:141:0.248:2	0/1:141,14:32:155:0.090:2	0/1:139,26:33:165:0.158:2	0/1:114,50:32:164:0.305:2	0/1:72,45:32:117:0.385:2
chr15	79058339	rs199823022	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:94,13:31:107:0.121:2	0/1:38,9:33:47:0.191:2	0/1:12,4:31:16:0.250:2	0/1:103,17:33:120:0.142:2	0/1:85,48:32:134:0.361:2	0/1:111,14:30:125:0.112:2	0/1:95,27:32:122:0.221:2	0/1:128,10:34:138:0.072:2	0/1:127,9:33:138:0.066:2	0/1:105,38:33:143:0.266:2	0/1:66,36:31:104:0.353:2
chr15	79058375	rs201636673	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:70,9:31:79:0.114:2	0/1:35,7:32:42:0.167:2	./.	0/1:75,14:33:89:0.157:2	0/1:61,14:33:75:0.187:2	0/1:78,6:28:84:0.071:2	0/1:53,10:30:63:0.159:2	0/1:88,8:33:96:0.083:2	./.	0/1:68,10:31:78:0.128:2	0/1:57,14:32:71:0.197:2
chr15	79058378	rs201462332	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:64,9:32:73:0.123:2	0/1:34,7:32:41:0.171:2	./.	0/1:74,14:32:88:0.159:2	0/1:59,14:30:73:0.192:2	0/1:71,5:28:76:0.066:2	0/1:49,9:31:58:0.155:2	0/1:78,8:32:86:0.093:2	./.	0/1:66,9:33:75:0.120:2	0/1:49,14:30:63:0.222:2
chr15	79058428	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,8:29:62:0.129:2	./.	./.	./.
chr15	79058572	rs1809421	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:29:35:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,4:28:4:1.00:2	0/1:0,31:28:31:1.00:2	0/1:28,12:30:40:0.300:2	0/1:30,20:30:50:0.400:2	0/1:0,29:28:29:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,18:27:18:1.00:2
chr15	79058730	rs189146505	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,20:31:41:0.488:2	0/1:25,15:32:40:0.375:2	./.	./.	./.	./.	./.
chr15	79058887	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,6:33:31:0.194:2	./.	./.	./.	./.	./.
chr15	79058923	rs1809422	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:30:46:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,4:27:4:1.00:2	0/1:0,45:29:45:1.00:2	0/1:1,13:28:14:0.929:2	0/1:0,50:30:50:1.00:2	0/1:0,24:29:24:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,18:31:18:1.00:2
chr15	79058951	rs28699256	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,24:28:48:0.500:2	0/1:17,34:27:51:0.667:2	0/1:0,3:30:3:1.00:2	0/1:0,55:28:55:1.00:2	0/1:0,18:28:18:1.00:2	0/1:33,25:27:58:0.431:2	0/1:23,11:29:34:0.324:2	./.	0/1:0,26:29:26:1.00:2	0/1:26,19:27:46:0.422:2	0/1:0,20:27:20:1.00:2
chr15	79058968	rs112827102	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,5:31:19:0.278:2	./.	./.	./.	./.	./.	./.
chr15	79059040	rs199919711	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,7:30:34:0.206:2	0/1:18,8:32:26:0.308:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	79059041	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,7:32:34:0.206:2	0/1:18,8:33:26:0.308:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	79059182	rs143974743	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,3:30:16:0.188:2	./.	./.	./.	./.	./.
chr15	79059202	rs192424653	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,3:31:29:0.103:2	./.	./.	./.	./.	./.
chr15	79064080	rs11635931	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,22:29:23:0.957:2	0/1:0,14:30:14:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,32:30:32:1.00:2	0/1:33,37:30:70:0.529:2	0/1:28,17:31:45:0.378:2	0/1:27,13:31:40:0.325:2	./.	0/1:0,41:31:42:1.00:2	0/1:23,11:30:34:0.324:2	0/1:0,26:31:27:1.00:2
chr15	79064143	rs11635870	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,21:29:22:0.955:2	0/1:0,21:30:21:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,38:29:38:1.00:2	0/1:37,45:30:82:0.549:2	0/1:32,28:30:60:0.467:2	0/1:40,24:29:64:0.375:2	./.	0/1:0,42:31:42:1.00:2	0/1:28,9:29:37:0.243:2	0/1:0,30:29:30:1.00:2
chr15	79065443	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,35:31:170:0.206:2
chr15	79065453	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,22:29:192:0.115:2	./.	./.	./.
chr15	79065470	rs200989422	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,28:17:100:0.286:2	0/1:112,22:10:134:0.164:2	0/1:23,13:18:36:0.361:2	0/1:112,29:20:141:0.206:2	0/1:118,34:15:152:0.224:2	0/1:115,30:17:146:0.207:2	0/1:100,43:15:143:0.301:2	0/1:88,34:17:122:0.279:2	0/1:106,33:18:139:0.237:2	0/1:88,43:16:132:0.328:2	0/1:67,55:19:122:0.451:2
chr15	79067005	rs151217691	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,7:32:46:0.152:2	0/1:29,14:28:43:0.326:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	79067055	rs2277549	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,29:27:76:0.392:2	0/1:39,22:29:61:0.361:2	0/1:0,4:31:4:1.00:2	0/1:26,41:29:68:0.612:2	./.	0/1:47,58:28:106:0.552:2	0/1:33,26:29:59:0.441:2	./.	0/1:58,28:29:86:0.326:2	./.	0/1:21,35:29:56:0.625:2
chr15	79067065	rs201460425	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,4:26:51:0.078:2	./.	./.	./.	./.	./.	./.
chr15	79067099	rs142017909	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:57,10:29:67:0.149:2	0/1:50,8:30:58:0.138:2	./.	0/1:73,7:29:80:0.088:2	./.	0/1:93,10:31:103:0.097:2	./.	./.	./.	./.	0/1:60,15:31:75:0.200:2
chr15	79069121	rs11854507	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,22:31:22:1.00:2	0/1:1,18:30:19:0.947:2	./.	0/1:0,40:31:40:1.00:2	0/1:24,21:30:45:0.467:2	0/1:29,17:30:46:0.370:2	0/1:33,27:30:60:0.450:2	./.	0/1:0,33:32:33:1.00:2	./.	0/1:21,20:30:41:0.488:2
chr15	79083120	rs2127898	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:143,4:31:148:0.027:2	./.	./.	./.	0/1:114,60:31:174:0.345:2	0/1:86,50:31:137:0.368:2	./.	0/1:128,63:31:191:0.330:2	./.	0/1:84,49:31:134:0.368:2	0/1:62,52:31:114:0.456:2
chr15	79089007	rs3743057	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:31:52:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,11:32:11:1.00:2	0/1:1,87:32:88:0.989:2	0/1:0,108:30:108:1.00:2	0/1:0,110:32:111:1.00:2	0/1:0,145:31:145:1.00:2	0/1:66,49:31:115:0.426:2	0/1:0,97:32:97:1.00:2	0/1:41,32:31:73:0.438:2	0/1:0,78:31:78:1.00:2
chr15	79089074	rs61752773	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,20:31:25:0.800:2	./.
chr15	79089111	rs3825807	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:32:22:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,8:32:8:1.00:2	0/1:1,17:31:18:0.944:2	0/1:5,9:32:14:0.643:2	0/1:15,10:32:25:0.400:2	0/1:0,3:35:3:1.00:2	./.	0/1:1,6:32:7:0.857:2	./.	./.
chr15	79092750	rs7173267	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,8:29:8:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,2:27:2:1.00:2	0/1:0,6:29:6:1.00:2	0/1:5,5:29:10:0.500:2	./.	./.	./.	0/1:0,7:28:7:1.00:2	./.	./.
chr15	79177321	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,6:32:87:0.069:2	./.	./.	./.	./.	./.	./.
chr15	79184593	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:31:90:0.044:2	./.
chr15	79184612	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:32:87:0.046:2	./.
chr15	79185877	rs1836556	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,37:29:84:0.440:2	0/1:45,30:28:75:0.400:2	./.	./.	./.	0/1:68,29:29:97:0.299:2	./.	./.	./.	./.	0/1:89,58:29:147:0.395:2
chr15	79185898	rs1435163	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,50:32:108:0.463:2	0/1:53,28:32:81:0.346:2	./.	./.	./.	0/1:85,39:32:124:0.315:2	./.	./.	./.	./.	0/1:110,69:32:179:0.385:2
chr15	79186460	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,4:31:101:0.040:2	./.	./.	./.	./.	./.	./.
chr15	79186499	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:169,4:32:173:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr15	79187184	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:31:138:0.029:2	./.	./.	./.
chr15	79189355	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:195,4:32:199:0.020:2	./.	./.	./.	0/1:184,8:30:192:0.042:2	0/1:184,7:31:191:0.037:2	0/1:186,9:30:195:0.046:2	0/1:183,12:31:195:0.062:2	0/1:184,13:32:197:0.066:2	./.	./.
chr15	79189365	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:191,5:33:196:0.026:2	0/1:192,5:32:197:0.025:2	./.	./.	./.	./.	./.	./.
chr15	79189381	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:193,5:33:198:0.025:2	0/1:189,4:32:194:0.021:2	./.	0/1:191,4:32:195:0.021:2	0/1:193,6:30:199:0.030:2	./.	./.
chr15	79217690	rs2044226	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:31:56:1.00:2	0/1:0,40:30:40:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,89:30:89:1.00:2	0/1:0,114:30:114:1.00:2	0/1:0,92:30:92:1.00:2	0/1:0,122:30:122:1.00:2	0/1:0,100:30:100:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,81:30:81:1.00:2	0/1:0,61:31:61:1.00:2
chr15	79217726	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,40:32:82:0.488:2
chr15	79224727	rs78155742	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,20:32:62:0.323:2
chr15	79224747	rs13345	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,28:31:57:0.491:2	0/1:9,18:32:27:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,14:32:47:0.298:2
chr15	79231478	rs12148472	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,20:29:56:0.357:2	./.	./.	./.
chr15	79231518	rs11638844	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,13:32:31:0.419:2	0/1:5,9:32:14:0.643:2	0/1:2,2:34:4:0.500:2	0/1:0,31:32:31:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,20:32:20:1.00:2	0/1:8,24:31:32:0.750:2	0/1:2,35:32:38:0.946:2	0/1:0,18:32:18:1.00:2	0/1:15,16:33:31:0.516:2
chr15	79237247	rs1036938	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,24:31:52:0.462:2	0/1:13,21:32:34:0.618:2	0/1:7,4:30:11:0.364:2	0/1:2,64:32:66:0.970:2	0/1:2,81:31:83:0.976:2	0/1:0,64:32:65:1.00:2	0/1:0,58:32:58:1.00:2	0/1:53,53:32:106:0.500:2	0/1:0,69:33:69:1.00:2	0/1:1,38:33:39:0.974:2	0/1:19,26:32:45:0.578:2
chr15	79237293	rs2289702	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:32:7:0.571:2	./.	./.	./.	./.	0/1:10,12:30:22:0.545:2	./.	./.	./.
chr15	79237324	rs1036939	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	0/1:0,2:32:2:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,4:30:4:1.00:2	./.	0/1:0,6:32:6:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,2:32:2:1.00:2
chr15	79277511	rs2230518	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:31:11:0.545:2	./.	./.	./.	0/1:77,72:30:149:0.483:2	./.	./.	./.	./.
chr15	79296172	rs1562008	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:33,26:31:59:0.441:2	0/1:26,19:31:45:0.422:2	./.	0/1:31,28:31:59:0.475:2	./.	./.	0/1:0,99:31:99:1.00:2	0/1:45,40:31:85:0.471:2	./.	./.	0/1:37,33:32:70:0.471:2
chr15	79298523	rs894780	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,15:31:17:1.00:2	./.	./.	0/1:51,46:31:97:0.474:2	./.	0/1:72,53:31:125:0.424:2	./.	./.	0/1:44,38:31:82:0.463:2
chr15	79324636	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:31:140:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	79502168	rs41280052	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,22:31:57:0.386:2
chr15	79586361	rs8038778	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:32:29:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,5:34:5:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,25:32:25:1.00:2	./.	0/1:0,23:32:23:1.00:2	0/1:33,23:33:56:0.411:2	0/1:24,13:33:37:0.351:2	0/1:8,10:32:18:0.556:2	0/1:0,31:32:31:1.00:2
chr15	79586865	rs55824566	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,29:30:61:0.475:2	./.	./.	./.	./.	./.	./.	./.
chr15	79587912	rs55654814	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,35:32:80:0.443:2	./.	./.	./.	./.	./.	./.	./.
chr15	79587964	rs2279960	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,3:32:29:0.103:2	./.	0/1:2,5:30:7:0.714:2	0/1:11,17:31:28:0.607:2	./.	./.	0/1:1,20:31:22:0.952:2	0/1:18,15:32:33:0.455:2	0/1:17,24:32:41:0.585:2	./.	0/1:27,26:31:53:0.491:2
chr15	79588211	rs141152975	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,10:31:20:0.526:2	./.	./.	./.	./.	./.
chr15	79588471	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:32:89:0.045:2	./.	./.	./.	./.	./.
chr15	79588710	rs59734296	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,71:32:71:1.00:2	0/1:1,40:31:41:0.976:2	0/1:7,13:32:20:0.650:2	./.	0/1:50,41:31:91:0.451:2	./.	./.	./.	./.	0/1:34,36:31:70:0.514:2	0/1:52,41:33:93:0.441:2
chr15	79589174	rs1434464	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,99:33:99:1.00:2	0/1:1,72:33:73:0.986:2	0/1:0,27:32:27:1.00:2	0/1:2,176:33:178:0.989:2	0/1:0,110:32:110:1.00:2	./.	0/1:0,104:33:104:1.00:2	0/1:97,69:32:166:0.416:2	0/1:106,70:34:176:0.398:2	0/1:56,59:33:115:0.513:2	0/1:0,140:33:140:1.00:2
chr15	79590208	rs7180169	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,15:31:15:1.00:2	0/1:0,16:32:16:1.00:2	./.	0/1:0,22:32:22:1.00:2	0/1:0,23:31:23:1.00:2	./.	0/1:0,13:32:13:1.00:2	0/1:13,21:31:34:0.618:2	0/1:11,18:33:29:0.621:2	0/1:7,9:33:16:0.563:2	0/1:0,27:32:27:1.00:2
chr15	79606130	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,36:29:77:0.468:2	./.	./.	./.	./.	./.	./.	./.
chr15	79606137	rs3825933	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,109:31:109:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,81:30:81:1.00:2	0/1:0,88:31:88:1.00:2	0/1:0,95:30:95:1.00:2	0/1:0,87:31:87:1.00:2	0/1:1,108:30:109:0.991:2	0/1:1,109:32:110:0.991:2	0/1:0,72:31:72:1.00:2	0/1:0,124:31:124:1.00:2
chr15	79614418	rs906439	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:29:45:1.00:2	0/1:0,31:29:31:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,67:27:67:1.00:2	0/1:0,56:28:56:1.00:2	0/1:0,53:27:53:1.00:2	0/1:0,47:27:47:1.00:2	0/1:0,78:28:78:1.00:2	0/1:0,72:29:72:1.00:2	0/1:0,56:28:56:1.00:2	0/1:0,66:27:66:1.00:2
chr15	79748603	rs7183867	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,55:31:124:0.444:2	./.	./.	./.	./.	0/1:31,44:32:75:0.587:2	0/1:55,49:31:104:0.471:2
chr15	79749261	rs79982509	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,15:33:24:0.625:2	./.	./.	./.	./.	0/1:70,80:33:150:0.533:2	./.	./.	./.
chr15	79749447	rs11634652	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,24:29:55:0.436:2	./.	./.	./.	./.	0/1:12,20:31:32:0.625:2	0/1:28,26:31:54:0.481:2
chr15	79750127	rs2902954	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,66:31:66:1.00:2	0/1:0,43:31:43:1.00:2	0/1:6,7:33:13:0.538:2	./.	0/1:37,50:31:87:0.575:2	./.	./.	0/1:48,44:32:92:0.478:2	./.	./.	./.
chr15	79750256	rs3750002	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:28:4:0.750:2	./.	./.	./.	./.	0/1:40,40:32:80:0.500:2	./.	./.	./.
chr15	79750307	rs1004724	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,99:30:99:1.00:2	0/1:0,37:30:37:1.00:2	0/1:4,6:29:10:0.600:2	0/1:1,110:30:111:0.991:2	0/1:0,56:29:56:1.00:2	0/1:0,80:30:80:1.00:2	0/1:0,91:30:91:1.00:2	0/1:0,105:30:105:1.00:2	0/1:1,93:30:94:0.989:2	0/1:0,99:30:100:1.00:2	0/1:0,97:30:97:1.00:2
chr15	79755583	rs61746211	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,78:31:174:0.448:2	./.	./.	./.
chr15	79755604	rs2297773	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,59:30:127:0.465:2	0/1:85,86:29:171:0.503:2	./.	0/1:83,101:29:184:0.549:2	./.	./.	0/1:0,78:30:78:1.00:2	0/1:0,60:29:60:1.00:2
chr15	79755609	rs112348974	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:32:54:0.074:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	80137560	rs8923	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,24:32:58:0.414:2	./.
chr15	80191343	rs7257	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,93:32:196:0.474:2	./.	0/1:108,83:31:191:0.435:2	./.	0/1:0,169:31:169:1.00:2	0/1:1,181:32:182:0.995:2	0/1:4,180:32:184:0.978:2	0/1:0,187:32:187:1.00:2
chr15	80215146	rs77136548	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,18:30:49:0.367:2	./.	./.	./.	./.	./.
chr15	80215300	rs2733102	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,10:31:10:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,4:33:4:1.00:2	0/1:15,7:32:22:0.318:2	0/1:5,16:31:21:0.762:2	./.	0/1:0,31:31:31:1.00:2	./.	./.	./.	./.
chr15	80215597	rs2303824	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,9:30:9:1.00:2	0/1:2,6:27:8:0.750:2	0/1:1,4:27:5:0.800:2
chr15	80215601	rs17286886	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,11:31:12:0.917:2	./.	./.	./.	0/1:0,8:26:8:1.00:2	./.	./.	./.
chr15	80216015	rs3803540	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,19:31:39:0.487:2	./.	./.	0/1:0,30:32:30:1.00:2	0/1:14,10:32:24:0.417:2	0/1:6,8:32:14:0.571:2
chr15	80216165	rs17214656	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,14:29:23:0.609:2	0/1:5,3:30:8:0.375:2
chr15	80216176	rs34149442	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,12:30:18:0.667:2	./.
chr15	80216199	rs3803541	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,6:30:9:0.667:2	./.	./.	./.	./.	./.
chr15	80216243	rs36070199	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:27:6:0.500:2	./.
chr15	80216325	rs12442408	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,37:32:37:1.00:2	0/1:9,10:30:19:0.526:2	0/1:11,10:31:21:0.476:2
chr15	80216516	rs71409262	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,32:29:89:0.360:2	./.
chr15	80216532	rs2733101	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:31:54:1.00:2	0/1:4,44:32:48:0.917:2	0/1:0,2:31:2:1.00:2	0/1:45,31:31:76:0.408:2	0/1:29,23:30:52:0.442:2	./.	0/1:0,43:31:43:1.00:2	./.	./.	./.	./.
chr15	80216931	rs34172478	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:32:7:0.429:2
chr15	80217100	rs2115534	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:31:28:1.00:2	0/1:0,29:29:29:1.00:2	0/1:0,4:31:4:1.00:2	0/1:31,19:30:50:0.380:2	0/1:13,11:30:24:0.458:2	./.	0/1:0,35:31:35:1.00:2	./.	./.	./.	./.
chr15	80253429	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.	./.	./.	./.	./.
chr15	80253433	rs61743562	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2	./.	./.	./.	./.	./.
chr15	80259964	rs16971619	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,13:32:76:0.171:2	0/1:5,45:31:50:0.900:2	0/1:66,22:32:88:0.250:2	0/1:81,32:32:113:0.283:2	./.	./.	./.
chr15	80260014	rs8026803	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,25:30:87:0.287:2	0/1:2,72:30:74:0.973:2	0/1:75,37:31:112:0.330:2	0/1:92,40:30:132:0.303:2	./.	./.	./.
chr15	80263217	rs3826007	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,56:31:113:0.496:2	0/1:0,166:31:166:1.00:2	0/1:64,62:31:126:0.492:2	0/1:92,99:31:191:0.518:2	./.	./.	./.
chr15	80263255	rs138534762	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,70:31:142:0.493:2	./.	./.	./.	./.	./.	./.
chr15	80263345	rs1138358	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,67:32:149:0.450:2	0/1:0,188:32:188:1.00:2	0/1:90,100:32:190:0.526:2	0/1:106,87:33:193:0.451:2	./.	./.	./.
chr15	80263406	rs1138357	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,40:27:107:0.374:2	0/1:0,140:29:140:1.00:2	0/1:83,63:29:146:0.432:2	0/1:79,73:29:152:0.480:2	./.	./.	./.
chr15	80423583	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:33:147:0.027:2	./.	./.
chr15	80423600	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:32:146:0.027:2	./.	./.
chr15	80472526	rs11555096	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,15:31:42:0.357:2	./.	./.	./.	./.	./.	./.
chr15	80884025	rs4072568	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,6:33:8:0.750:2	0/1:49,52:33:101:0.515:2	0/1:73,75:33:148:0.507:2	./.	./.	./.	./.	./.	./.
chr15	80987812	rs62007944	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:30:4:1.00:2	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	./.	./.
chr15	80987825	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr15	81172145	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,4:31:102:0.039:2	./.	./.	./.	./.	./.	./.
chr15	81212521	rs2271160	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,52:32:100:0.520:2	./.	./.	./.	./.	0/1:76,54:33:130:0.415:2	0/1:63,44:32:107:0.411:2	./.
chr15	81212608	rs1553647	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:33:43:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,14:32:14:1.00:2	0/1:22,34:33:56:0.607:2	0/1:0,84:32:84:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,93:33:93:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,54:33:54:1.00:2	0/1:0,60:33:60:1.00:2
chr15	81213426	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:34:91:0.044:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	81234604	rs140790232	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,37:32:99:0.374:2	./.	./.	./.
chr15	81296230	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,6:31:18:0.333:2	./.	./.	./.	./.	./.
chr15	81440725	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:161,4:31:165:0.024:2	./.	./.	./.	./.	./.	./.
chr15	81440847	rs199517516	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,18:31:40:0.450:2	./.
chr15	81571151	rs11072999	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	81574995	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,5:31:77:0.065:2	./.	./.	./.	./.
chr15	81582868	rs8031107	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,5:30:16:0.313:2	0/1:63,70:31:133:0.526:2	0/1:41,48:31:89:0.539:2	./.	0/1:73,58:31:131:0.443:2	0/1:2,168:31:170:0.988:2	./.	0/1:79,51:31:130:0.392:2	0/1:0,136:32:136:1.00:2
chr15	81592802	rs11073001	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,64:31:64:1.00:2	./.	./.	./.	./.	0/1:38,24:31:62:0.387:2	./.	./.
chr15	81598269	rs11556218	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,23:31:62:0.371:2	./.	./.	./.	./.	0/1:22,16:35:38:0.421:2	./.	./.
chr15	81598416	rs1803275	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,14:31:45:0.311:2	./.	./.	./.	./.	0/1:21,19:33:40:0.475:2	./.	./.
chr15	81598779	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:32:79:0.051:2	./.	./.	./.
chr15	81600995	rs4238526	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:33:103:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,94:33:94:1.00:2	0/1:0,111:33:111:1.00:2	0/1:0,106:33:106:1.00:2	0/1:0,113:33:113:1.00:2	0/1:0,139:33:139:1.00:2	0/1:0,110:34:110:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,136:33:136:1.00:2
chr15	81624768	rs4417518	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,73:31:73:1.00:2	0/1:75,40:31:115:0.348:2	0/1:60,38:30:98:0.388:2	0/1:1,78:32:79:0.987:2	0/1:0,71:31:71:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,57:31:58:1.00:2
chr15	81625028	rs8031046	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,40:31:93:0.430:2	./.	./.	0/1:50,22:32:72:0.306:2	./.	./.	./.	./.
chr15	81625385	rs11636318	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:31:47:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,5:31:5:1.00:2	0/1:43,23:30:66:0.348:2	0/1:27,37:30:64:0.578:2	0/1:48,21:31:69:0.304:2	0/1:25,14:31:39:0.359:2	0/1:1,60:31:61:0.984:2	0/1:0,57:31:57:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,78:31:78:1.00:2
chr15	81629009	rs150024184	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,57:33:140:0.407:2	./.	./.
chr15	81636267	rs7161991	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,35:32:35:1.00:2	0/1:0,16:31:16:1.00:2	./.	0/1:0,35:31:35:1.00:2	0/1:11,21:32:32:0.656:2	0/1:20,16:30:36:0.444:2	0/1:0,18:31:18:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,45:31:45:1.00:2
chr15	81637284	rs4278705	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,181:32:181:1.00:2	0/1:1,85:32:86:0.988:2	0/1:0,18:31:18:1.00:2	0/1:102,60:30:162:0.370:2	0/1:72,86:32:158:0.544:2	0/1:108,69:32:177:0.390:2	0/1:86,67:32:153:0.438:2	0/1:3,174:32:177:0.983:2	0/1:0,166:33:166:1.00:2	0/1:1,176:32:177:0.994:2	0/1:1,167:32:168:0.994:2
chr15	81648130	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,5:29:117:0.043:2
chr15	81665021	rs76902501	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:32:112:0.036:2	./.	./.	./.	./.
chr15	82335687	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:31:89:0.045:2	./.	./.	./.	./.	./.
chr15	82337804	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:31:130:0.031:2	./.	./.	./.
chr15	82431136	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:32:110:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	82431145	rs72749527	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,65:31:129:0.504:2	./.	./.	./.	./.	./.	./.	./.
chr15	82443939	rs4725	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,180:32:180:1.00:2	0/1:2,112:32:114:0.982:2	0/1:11,14:31:25:0.560:2	0/1:92,89:31:181:0.492:2	./.	0/1:107,77:31:184:0.418:2	0/1:91,70:31:161:0.435:2	0/1:105,74:31:179:0.413:2	./.	./.	0/1:2,182:32:184:0.989:2
chr15	82444154	rs72749532	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,54:31:99:0.545:2	./.	./.	./.	./.	./.	./.	./.
chr15	82444437	rs905450	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,113:30:113:1.00:2	0/1:0,70:30:70:1.00:2	./.	0/1:1,100:31:101:0.990:2	0/1:0,62:29:62:1.00:2	0/1:54,45:31:100:0.455:2	0/1:41,26:30:67:0.388:2	0/1:1,90:30:91:0.989:2	0/1:0,102:31:102:1.00:2	0/1:50,47:30:97:0.485:2	0/1:0,124:30:125:1.00:2
chr15	82512429	rs2292189	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,128:27:132:0.970:2	0/1:4,84:28:88:0.955:2	0/1:0,23:29:23:1.00:2	0/1:3,195:28:198:0.985:2	0/1:178,5:28:183:0.027:2	0/1:5,184:27:189:0.974:2	0/1:3,152:27:155:0.981:2	0/1:5,185:28:192:0.974:2	./.	0/1:109,81:27:190:0.426:2	0/1:9,168:27:177:0.949:2
chr15	82545027	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:189,5:32:194:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr15	82555242	rs11631813	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,10:34:17:0.588:2	./.	./.	./.	./.	./.	0/1:67,60:32:127:0.472:2	0/1:71,45:33:116:0.388:2	./.
chr15	82563991	rs16973457	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,90:32:92:0.978:2	0/1:0,56:32:56:1.00:2	0/1:0,10:31:10:1.00:2	0/1:74,81:31:155:0.523:2	./.	0/1:2,118:31:120:0.983:2	0/1:0,68:31:68:1.00:2	0/1:80,89:31:169:0.527:2	0/1:72,79:32:151:0.523:2	0/1:54,61:32:115:0.530:2	0/1:2,178:32:180:0.989:2
chr15	82574879	rs11630197	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:32:11:0.455:2	./.	./.	0/1:65,59:30:124:0.476:2	0/1:70,64:31:134:0.478:2	./.	0/1:48,66:31:114:0.579:2	0/1:34,33:31:67:0.493:2	./.
chr15	82574977	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,5:28:179:0.028:2	./.
chr15	82574991	rs138008248	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,6:29:166:0.036:2	./.
chr15	82575288	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,4:29:19:0.211:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	82575307	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:28:14:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	82823390	rs142262304	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:30:15:0.600:2	./.	0/1:56,45:29:101:0.446:2	0/1:65,41:29:106:0.387:2	0/1:71,36:29:107:0.336:2	./.	./.	0/1:37,40:29:77:0.519:2	0/1:61,58:29:119:0.487:2
chr15	82824800	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:31:109:0.037:2	./.
chr15	83207733	rs142171362	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,6:29:19:0.316:2	./.	0/1:66,49:30:115:0.426:2	0/1:62,59:30:121:0.488:2	0/1:56,43:29:99:0.434:2	./.	./.	0/1:51,50:30:101:0.495:2	0/1:63,56:30:119:0.471:2
chr15	83215251	rs1267657	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,43:32:99:0.434:2	0/1:70,54:32:124:0.435:2	0/1:66,60:33:126:0.476:2	./.	./.	0/1:77,50:33:127:0.394:2	0/1:79,63:33:142:0.444:2
chr15	83218367	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:31:91:0.044:2	./.
chr15	83224696	rs1145171	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:32:71:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,93:33:93:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,68:32:68:1.00:2
chr15	83357987	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:32:47:0.085:2
chr15	83357997	rs182094198	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:27:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	83428192	rs1108134	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:22,19:32:41:0.463:2	0/1:15,10:32:25:0.400:2	./.	0/1:19,15:31:34:0.441:2	./.	./.	./.	0/1:21,12:32:33:0.364:2	./.	0/1:12,15:32:27:0.556:2	./.
chr15	83428193	rs1108135	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,13:33:46:0.283:2	./.	./.
chr15	83438524	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,28:33:66:0.424:2	./.	./.
chr15	83440827	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	83447631	rs4779061	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,20:33:56:0.357:2	./.	./.	./.	0/1:49,42:33:91:0.462:2	./.	./.
chr15	83481870	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,6:30:199:0.030:2	./.	./.
chr15	83481880	rs35270670	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:103,91:33:194:0.469:2	0/1:65,58:32:123:0.472:2	0/1:22,20:33:42:0.476:2	./.	0/1:115,80:32:195:0.410:2	0/1:113,86:32:199:0.432:2	0/1:101,92:33:193:0.477:2	./.	./.	0/1:90,107:33:197:0.543:2	0/1:113,81:33:194:0.418:2
chr15	83481945	rs190194464	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:34:192:0.021:2	./.	./.
chr15	83481972	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2	./.	./.
chr15	83495214	rs113378787	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,77:31:171:0.450:2	./.	./.	./.	./.
chr15	83495221	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:31:143:0.028:2	./.	./.	./.	./.	./.
chr15	83495255	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:32:138:0.029:2	./.	./.	./.	./.	./.
chr15	83499665	rs3814282	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,3:28:6:0.500:2	./.	./.	./.	./.	./.	./.
chr15	83499766	rs3814281	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,16:31:33:0.485:2	./.	./.	./.	0/1:6,7:32:13:0.538:2	./.	./.
chr15	83502016	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:34:42:0.095:2	./.
chr15	83502065	rs11259953	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,21:30:44:0.477:2	./.	./.
chr15	83502066	rs11259954	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,21:29:44:0.477:2	./.	./.
chr15	83527827	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:144,4:31:148:0.027:2	./.	./.	./.	./.	./.	./.
chr15	83657800	rs61738562	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:32:144:0.028:2
chr15	83657878	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:33:171:0.023:2	./.
chr15	83657879	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:33:170:0.024:2	./.
chr15	83658701	rs200941963	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:158,35:32:193:0.181:2	./.	./.	./.	./.	./.	./.
chr15	83677176	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:33:6:0.500:2	./.	./.	./.	./.
chr15	83677185	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:30:6:0.500:2	./.	./.	./.	./.
chr15	83680287	rs4842860	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,22:30:22:1.00:2	0/1:0,10:30:10:1.00:2	./.	./.	0/1:19,13:29:32:0.406:2	0/1:15,11:29:26:0.423:2	0/1:0,14:30:14:1.00:2	0/1:0,15:29:15:1.00:2	0/1:8,6:25:14:0.429:2	0/1:0,15:30:15:1.00:2	0/1:9,8:29:17:0.471:2
chr15	83680329	rs17361375	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:30:6:0.500:2	./.	./.	./.
chr15	83725160	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,4:32:97:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr15	83781598	rs80329914	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:78,56:32:134:0.418:2	0/1:44,51:31:95:0.537:2	0/1:10,13:31:23:0.565:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	83781599	rs79470022	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:78,56:33:134:0.418:2	0/1:43,51:31:94:0.543:2	0/1:9,13:33:22:0.591:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	83781631	rs1989	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,31:29:70:0.449:2	0/1:46,44:30:90:0.489:2	./.	./.	./.	0/1:35,40:30:75:0.533:2	0/1:70,57:28:127:0.449:2
chr15	83926761	rs28618207	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:35:194:0.021:2	./.	./.	./.
chr15	83932292	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:34:154:0.026:2	./.	./.
chr15	84159601	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,4:32:39:0.103:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	84255758	rs17158793	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,56:31:131:0.427:2	./.	./.	./.	./.	0/1:71,70:31:141:0.496:2	./.	./.
chr15	84488636	rs4483821	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,7:31:18:0.389:2	0/1:1,137:29:138:0.993:2	0/1:59,65:29:124:0.524:2	0/1:63,55:29:118:0.466:2	0/1:84,73:29:157:0.465:2	./.	0/1:77,81:30:158:0.513:2	0/1:73,47:29:120:0.392:2	0/1:1,122:28:123:0.992:2
chr15	84539619	rs4144691	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,11:31:11:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,2:28:2:1.00:2	0/1:0,14:32:14:1.00:2	0/1:2,4:33:6:0.667:2	0/1:2,5:33:7:0.714:2	0/1:6,10:34:16:0.625:2	0/1:5,6:32:11:0.545:2	0/1:0,8:32:8:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,14:32:14:1.00:2
chr15	84553916	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:31:125:0.032:2
chr15	84581889	rs12439867	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:26,19:32:45:0.422:2	0/1:20,13:32:33:0.394:2	0/1:8,10:31:18:0.556:2	./.	./.	./.	0/1:68,69:32:137:0.504:2	./.	0/1:60,59:33:119:0.496:2	./.	./.
chr15	84581904	rs4842923	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,19:30:49:0.388:2	0/1:18,10:28:28:0.357:2	0/1:6,10:32:16:0.625:2	0/1:0,96:29:96:1.00:2	./.	0/1:58,58:30:116:0.500:2	0/1:0,130:30:130:1.00:2	./.	0/1:52,47:29:99:0.475:2	0/1:44,38:30:82:0.463:2	0/1:0,76:29:76:1.00:2
chr15	84582124	rs4842838	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:20,9:33:29:0.310:2	0/1:4,6:32:10:0.600:2	./.	0/1:0,16:32:16:1.00:2	./.	0/1:16,13:31:29:0.448:2	0/1:0,27:32:27:1.00:2	./.	0/1:19,8:33:27:0.296:2	0/1:16,13:32:29:0.448:2	0/1:0,24:31:24:1.00:2
chr15	84611367	rs34047645	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,15:31:21:0.714:2	./.	./.	0/1:23,11:31:34:0.324:2	0/1:14,8:32:22:0.364:2	0/1:12,15:29:27:0.556:2	./.
chr15	84611678	rs185650095	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,13:12:55:0.236:2	./.	0/1:39,8:14:47:0.170:2	./.	0/1:43,12:13:55:0.218:2	./.	0/1:59,8:21:67:0.119:2
chr15	84611805	rs61752778	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,32:31:56:0.571:2	./.	./.	./.
chr15	84639350	rs2277849	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,52:31:109:0.477:2	0/1:58,40:30:98:0.408:2	./.	./.	0/1:73,59:30:132:0.447:2	0/1:60,48:31:108:0.444:2	0/1:38,34:30:72:0.472:2	./.
chr15	84651057	rs140206840	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,30:30:49:0.612:2	./.
chr15	84651185	rs8031704	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,51:32:106:0.481:2	./.	0/1:59,62:32:121:0.512:2	0/1:2,125:33:127:0.984:2	./.	./.	0/1:52,56:33:108:0.519:2	0/1:0,125:32:125:1.00:2
chr15	84651290	rs7176737	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,21:28:44:0.477:2	0/1:10,16:28:26:0.615:2	0/1:0,2:32:2:1.00:2	0/1:35,21:28:56:0.375:2	0/1:28,24:28:52:0.462:2	0/1:29,28:27:57:0.491:2	0/1:0,66:28:66:1.00:2	./.	0/1:0,64:29:64:1.00:2	0/1:0,57:28:57:1.00:2	0/1:1,54:27:55:0.982:2
chr15	84706461	rs950169	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,25:31:55:0.455:2	./.	0/1:0,48:30:48:1.00:2	0/1:21,4:31:25:0.160:2	./.	./.	./.	0/1:0,54:32:54:1.00:2
chr15	85147165	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:31:67:0.060:2	./.	./.	./.	./.	./.
chr15	85149771	rs2271433	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:33:64:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,96:32:96:1.00:2	0/1:36,28:31:64:0.438:2	0/1:0,77:32:77:1.00:2	0/1:0,72:33:72:1.00:2	./.	0/1:0,81:33:81:1.00:2	0/1:49,37:33:86:0.430:2	0/1:0,118:33:119:1.00:2
chr15	85163998	rs2044502	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:31:24:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,2:32:2:1.00:2	0/1:27,20:31:47:0.426:2	0/1:20,18:31:38:0.474:2	0/1:38,14:32:52:0.269:2	0/1:0,25:29:25:1.00:2	./.	0/1:0,33:32:33:1.00:2	0/1:28,15:31:43:0.349:2	0/1:0,39:31:39:1.00:2
chr15	85165699	rs11635597	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:104,87:32:191:0.455:2	0/1:96,87:31:183:0.475:2	0/1:123,72:32:195:0.369:2	./.	./.	./.	0/1:3,176:32:179:0.983:2
chr15	85166769	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:33:112:0.036:2	./.
chr15	85186837	rs72750868	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,75:32:178:0.421:2	./.	0/1:96,83:32:179:0.464:2	./.	0/1:78,74:32:152:0.487:2	./.	./.	./.
chr15	85188994	rs2271432	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:30:33:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,4:31:4:1.00:2	0/1:30,32:30:62:0.516:2	0/1:58,26:28:84:0.310:2	0/1:47,29:30:76:0.382:2	0/1:0,79:30:79:1.00:2	./.	0/1:0,54:31:54:1.00:2	0/1:34,16:29:50:0.320:2	0/1:0,57:30:57:1.00:2
chr15	85189464	rs2271431	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,19:33:31:0.613:2	0/1:15,17:33:32:0.531:2	0/1:30,22:33:52:0.423:2	./.	./.	./.	0/1:0,36:32:36:1.00:2
chr15	85198606	rs17598561	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,28:29:72:0.389:2	./.	./.	./.	./.	./.	./.	./.
chr15	85198634	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,37:31:83:0.446:2
chr15	85200520	rs1051168	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,35:27:64:0.547:2	0/1:22,31:28:53:0.585:2	0/1:39,31:29:70:0.443:2	./.	./.	./.	0/1:1,70:27:71:0.986:2
chr15	85326039	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,4:30:95:0.042:2	./.	./.	./.	./.	./.	./.
chr15	85327422	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:31:125:0.032:2	./.	./.	./.
chr15	85333953	rs2241645	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,91:33:91:1.00:2	0/1:0,62:33:62:1.00:2	0/1:1,6:31:7:0.857:2	./.	0/1:121,71:32:192:0.370:2	0/1:82,84:33:166:0.506:2	0/1:2,169:33:171:0.988:2	./.	0/1:3,133:34:137:0.978:2	0/1:62,59:33:121:0.488:2	0/1:0,102:33:102:1.00:2
chr15	85341859	rs8182086	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,20:31:49:0.408:2	./.	./.
chr15	85345352	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,7:31:101:0.069:2	./.	./.	./.	./.	./.	0/1:95,5:31:100:0.050:2	./.
chr15	85360101	rs11857356	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:29:70:1.00:2	0/1:0,55:29:55:1.00:2	0/1:0,22:28:22:1.00:2	0/1:71,45:28:116:0.388:2	0/1:82,91:28:173:0.526:2	0/1:85,87:28:172:0.506:2	0/1:2,126:28:128:0.984:2	./.	0/1:0,111:29:111:1.00:2	0/1:51,36:28:87:0.414:2	0/1:0,84:27:84:1.00:2
chr15	85383145	rs3803403	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,37:31:66:0.561:2	0/1:30,34:30:64:0.531:2	0/1:27,27:31:54:0.500:2	./.	./.	./.	0/1:0,27:31:27:1.00:2
chr15	85383640	rs3803405	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,19:31:40:0.475:2	0/1:18,18:31:36:0.500:2	0/1:16,17:32:33:0.515:2	./.	./.	./.	0/1:0,27:30:27:1.00:2
chr15	85383839	rs3803406	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,20:31:20:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,4:34:4:1.00:2	./.	0/1:13,10:32:23:0.435:2	0/1:4,5:30:9:0.556:2	0/1:15,12:31:27:0.444:2	./.	0/1:8,7:34:15:0.467:2	0/1:11,9:32:20:0.450:2	0/1:1,23:31:24:0.958:2
chr15	85401259	rs306197	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,15:32:26:0.577:2	0/1:11,12:33:23:0.522:2	0/1:3,6:31:9:0.667:2	0/1:24,25:32:49:0.510:2	0/1:36,22:30:58:0.379:2	0/1:37,34:31:71:0.479:2	0/1:0,56:31:56:1.00:2	./.	0/1:0,73:33:73:1.00:2	0/1:27,20:32:47:0.426:2	0/1:0,35:32:35:1.00:2
chr15	85401419	rs167379	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:32:22:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,4:32:4:1.00:2	0/1:18,19:32:37:0.514:2	0/1:14,7:35:21:0.333:2	0/1:17,14:31:31:0.452:2	0/1:0,21:30:22:1.00:2	./.	0/1:0,18:32:18:1.00:2	0/1:15,8:33:23:0.348:2	0/1:0,34:32:34:1.00:2
chr15	85401680	rs35931910	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:14,11:31:26:0.440:2	0/1:6,6:31:12:0.500:2	0/1:0,4:30:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	85405995	rs187316	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,31:32:80:0.388:2	0/1:63,39:32:102:0.382:2	0/1:56,39:32:95:0.411:2	./.	./.	./.	./.
chr15	85447431	rs2290272	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,10:31:26:0.385:2	./.	./.	./.	./.	0/1:84,101:31:185:0.546:2	0/1:90,62:31:152:0.408:2	0/1:58,49:31:107:0.458:2	./.
chr15	85447434	rs45523532	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,72:31:159:0.453:2	./.	./.	./.	./.
chr15	85448875	rs8187758	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,68:30:139:0.489:2	0/1:50,45:31:95:0.474:2	0/1:44,43:29:87:0.494:2	./.
chr15	85467320	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:31:92:0.043:2	./.	./.	./.	./.
chr15	85476390	rs17222379	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,45:32:142:0.317:2	./.	./.	./.	./.
chr15	85476441	rs2305367	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,65:31:134:0.485:2	0/1:0,80:32:81:1.00:2	./.	./.
chr15	85478410	rs2242048	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,104:32:104:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,125:32:125:1.00:2	0/1:0,110:32:110:1.00:2	0/1:0,131:32:131:1.00:2	0/1:0,125:33:125:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,140:33:140:1.00:2	./.	0/1:50,48:31:98:0.490:2
chr15	85478729	rs2242046	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,38:31:39:0.974:2	0/1:0,28:31:28:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,45:30:45:1.00:2	0/1:1,51:30:52:0.981:2	0/1:0,59:30:59:1.00:2	0/1:1,56:31:57:0.982:2	0/1:25,32:31:57:0.561:2	./.	./.	0/1:22,18:29:40:0.450:2
chr15	85607586	rs150857058	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,49:34:112:0.438:2	./.	./.
chr15	85610349	rs35666574	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,53:32:109:0.486:2	./.	./.
chr15	85657120	rs62019510	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,11:32:42:0.262:2	./.
chr15	85664158	rs144501404	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,43:31:89:0.483:2	./.
chr15	85669569	rs145794013	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,16:32:41:0.390:2	./.
chr15	86122654	rs2061821	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:30:69:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,9:29:9:1.00:2	0/1:1,77:30:78:0.987:2	0/1:0,73:30:73:1.00:2	./.	0/1:0,58:30:58:1.00:2	0/1:55,36:30:91:0.396:2	0/1:7,79:31:86:0.919:2	0/1:34,31:30:65:0.477:2	0/1:0,73:30:73:1.00:2
chr15	86122779	rs2061822	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:29:63:1.00:2	0/1:0,46:28:46:1.00:2	0/1:0,5:29:5:1.00:2	0/1:1,76:29:77:0.987:2	0/1:0,68:28:68:1.00:2	./.	0/1:1,55:28:56:0.982:2	0/1:60,50:29:110:0.455:2	0/1:3,90:29:93:0.968:2	0/1:41,29:29:70:0.414:2	0/1:0,98:29:98:1.00:2
chr15	86122916	rs2061823	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,15:32:15:1.00:2	0/1:0,15:29:15:1.00:2	./.	0/1:0,13:30:13:1.00:2	0/1:0,13:28:13:1.00:2	./.	0/1:0,8:29:8:1.00:2	0/1:12,10:29:22:0.455:2	0/1:3,18:31:21:0.857:2	0/1:6,8:30:14:0.571:2	0/1:0,21:29:21:1.00:2
chr15	86123019	rs2061824	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:31:44:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,6:31:6:1.00:2	0/1:2,34:31:36:0.944:2	0/1:0,19:30:19:1.00:2	./.	0/1:0,21:32:21:1.00:2	0/1:32,7:30:40:0.179:2	0/1:1,56:31:57:0.982:2	0/1:9,18:30:27:0.667:2	0/1:1,50:31:51:0.980:2
chr15	86123170	rs745191	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:46,43:32:89:0.483:2	0/1:28,33:32:61:0.541:2	./.	./.	0/1:41,33:32:74:0.446:2	./.	0/1:2,105:32:107:0.981:2	0/1:44,77:32:121:0.636:2	0/1:1,88:33:89:0.989:2	./.	0/1:44,52:32:96:0.542:2
chr15	86123364	rs7177107	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,4:31:12:0.333:2	0/1:40,43:31:83:0.518:2	0/1:66,47:31:113:0.416:2	./.	./.	./.	./.	./.	0/1:48,38:32:86:0.442:2
chr15	86123462	rs745192	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,17:29:37:0.459:2	./.	./.	./.	./.	./.	0/1:25,20:30:45:0.444:2	./.
chr15	86123833	rs4075256	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:32:24:1.00:2	0/1:1,18:32:19:0.947:2	0/1:0,2:33:2:1.00:2	0/1:0,37:33:37:1.00:2	0/1:0,46:32:46:1.00:2	./.	0/1:0,33:33:33:1.00:2	0/1:31,21:32:52:0.404:2	0/1:0,35:32:35:1.00:2	0/1:10,16:33:26:0.615:2	0/1:0,43:33:43:1.00:2
chr15	86123924	rs4075255	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:32:33:1.00:2	0/1:2,32:31:34:0.941:2	0/1:0,4:31:4:1.00:2	0/1:0,37:32:37:1.00:2	0/1:1,38:32:39:0.974:2	./.	0/1:0,37:31:37:1.00:2	0/1:28,18:32:46:0.391:2	0/1:1,46:33:47:0.979:2	0/1:16,20:31:36:0.556:2	0/1:2,50:33:52:0.962:2
chr15	86123988	rs4075254	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:30:49:1.00:2	0/1:1,46:31:47:0.979:2	0/1:0,3:28:3:1.00:2	0/1:0,70:30:70:1.00:2	0/1:0,45:29:45:1.00:2	./.	0/1:0,70:29:70:1.00:2	0/1:38,37:30:75:0.493:2	0/1:3,76:30:79:0.962:2	0/1:38,38:30:76:0.500:2	0/1:3,81:30:84:0.964:2
chr15	86124419	rs4843073	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:32:74:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,102:33:102:1.00:2	0/1:1,99:32:100:0.990:2	./.	0/1:4,93:33:97:0.959:2	0/1:77,54:32:131:0.412:2	0/1:0,103:33:103:1.00:2	0/1:49,30:33:79:0.380:2	0/1:0,101:32:101:1.00:2
chr15	86124483	rs4843074	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,116:32:118:0.983:2	0/1:0,60:32:60:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,135:32:135:1.00:2	0/1:1,120:32:122:0.992:2	./.	0/1:2,127:32:129:0.984:2	0/1:116,78:32:194:0.402:2	0/1:0,133:33:133:1.00:2	0/1:96,44:33:140:0.314:2	0/1:0,142:32:143:1.00:2
chr15	86124555	rs4843075	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,95:32:98:0.969:2	0/1:0,61:32:61:1.00:2	0/1:0,12:31:12:1.00:2	0/1:1,134:31:135:0.993:2	0/1:1,54:31:55:0.982:2	./.	0/1:0,89:31:89:1.00:2	0/1:93,60:31:153:0.392:2	0/1:0,104:32:104:1.00:2	0/1:93,58:31:152:0.384:2	0/1:1,157:31:158:0.994:2
chr15	86124712	rs75504327	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,29:32:49:0.592:2	./.	./.	./.	./.	./.
chr15	86124946	rs7162168	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:27:46:1.00:2	0/1:1,30:27:31:0.968:2	0/1:0,6:29:6:1.00:2	0/1:0,73:27:73:1.00:2	0/1:0,71:27:71:1.00:2	./.	0/1:1,58:27:59:0.983:2	0/1:48,29:28:77:0.377:2	0/1:0,54:27:54:1.00:2	0/1:22,23:28:45:0.511:2	0/1:0,40:27:40:1.00:2
chr15	86124968	rs11633087	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:1,28:32:29:0.966:2	0/1:0,8:33:8:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,67:31:67:1.00:2	./.	0/1:1,58:32:59:0.983:2	0/1:45,23:31:69:0.338:2	0/1:43,16:33:59:0.271:2	0/1:21,21:32:42:0.500:2	0/1:0,38:32:38:1.00:2
chr15	86125031	rs7178065	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:32:43:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,36:32:36:1.00:2	./.	0/1:1,52:32:53:0.981:2	0/1:34,18:32:52:0.346:2	0/1:0,38:32:38:1.00:2	0/1:21,15:32:36:0.417:2	0/1:0,34:32:34:1.00:2
chr15	86125304	rs7179919	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,8:27:15:0.533:2	./.	0/1:10,6:28:16:0.375:2	./.	./.	./.
chr15	86182670	rs16942564	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,11:31:24:0.458:2	0/1:15,9:32:24:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	86198716	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:35:133:0.030:2	./.	./.
chr15	86266306	rs147829524	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,42:31:95:0.442:2	./.	./.	./.	./.
chr15	86273756	rs149781236	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,17:30:35:0.486:2	./.	./.	./.
chr15	86273818	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:30:56:0.071:2	./.	./.	./.
chr15	86278309	rs2241268	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:36,36:32:72:0.500:2	0/1:30,26:33:56:0.464:2	./.	./.	0/1:32,32:32:64:0.500:2	./.	0/1:7,84:32:91:0.923:2	0/1:71,53:33:124:0.427:2	0/1:37,46:32:83:0.554:2	./.	0/1:55,58:33:113:0.513:2
chr15	86284342	rs16943792	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,74:28:134:0.552:2	./.	0/1:65,60:28:125:0.480:2	./.	./.	./.
chr15	86286787	rs61734378	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,37:32:80:0.463:2	0/1:18,25:31:43:0.581:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	86287035	rs79101360	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,5:19:12:0.417:2	./.	./.	./.
chr15	86287867	rs2614668	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,29:32:56:0.518:2	./.	./.	./.	./.	0/1:38,51:32:89:0.573:2	0/1:22,26:32:48:0.542:2	./.
chr15	86287910	rs11073517	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,19:28:41:0.463:2	0/1:8,12:31:20:0.600:2	0/1:0,2:33:2:1.00:2	0/1:31,17:31:48:0.354:2	0/1:27,24:31:51:0.471:2	./.	./.	./.	./.	./.	0/1:24,40:32:65:0.625:2
chr15	86311593	rs8041288	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:31:7:0.571:2	0/1:44,59:31:103:0.573:2	0/1:58,67:31:125:0.536:2	./.	./.	./.	./.	./.	0/1:25,36:31:61:0.590:2
chr15	86311695	rs1978391	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:14,21:31:35:0.600:2	0/1:6,11:31:17:0.647:2	./.	./.	0/1:19,18:31:37:0.486:2	./.	0/1:0,33:32:33:1.00:2	0/1:24,18:32:42:0.429:2	0/1:19,30:32:49:0.612:2	./.	0/1:16,19:33:35:0.543:2
chr15	86312273	rs36031133	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,7:32:23:0.304:2	./.	./.	./.	./.	0/1:11,10:33:21:0.476:2	./.	./.
chr15	86312294	rs35582838	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:30:5:0.800:2	0/1:5,13:31:18:0.722:2	0/1:4,5:30:9:0.556:2	./.	./.	./.	./.	./.	0/1:5,10:29:15:0.667:2
chr15	86312681	rs11073537	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:29,21:31:50:0.420:2	0/1:9,13:32:22:0.591:2	./.	./.	0/1:54,56:30:110:0.509:2	./.	0/1:6,102:31:108:0.944:2	0/1:44,50:31:94:0.532:2	0/1:43,33:32:76:0.434:2	./.	0/1:29,36:31:65:0.554:2
chr15	86313048	rs2614657	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,27:30:48:0.563:2	0/1:12,10:29:22:0.455:2	0/1:4,3:35:7:0.429:2	0/1:0,37:32:37:1.00:2	0/1:0,41:31:41:1.00:2	0/1:26,23:32:49:0.469:2	0/1:3,46:32:49:0.939:2	0/1:0,49:31:49:1.00:2	0/1:1,32:33:33:0.970:2	0/1:0,27:31:27:1.00:2	0/1:0,30:30:30:1.00:2
chr15	86697698	rs191931920	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,18:28:43:0.419:2	./.	./.	./.	./.	./.	./.
chr15	86702241	rs79814209	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,35:31:85:0.412:2	./.	./.	./.	0/1:42,32:31:74:0.432:2	./.
chr15	86768135	rs79987050	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,10:32:16:0.625:2	./.	0/1:92,35:31:127:0.276:2	./.	./.	./.	./.	./.	./.
chr15	86800154	rs185896474	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,46:32:101:0.455:2	./.	./.	./.	./.	./.	./.	./.
chr15	86800209	rs1353578	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,27:34:55:0.491:2	0/1:14,16:33:30:0.533:2	./.	0/1:47,33:32:80:0.413:2	0/1:39,37:32:76:0.487:2	0/1:38,31:31:69:0.449:2	./.	0/1:0,78:33:78:1.00:2	0/1:35,47:33:82:0.573:2	0/1:36,30:32:66:0.455:2	0/1:43,23:33:66:0.348:2
chr15	86806029	rs1566088	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:92,63:31:155:0.406:2	0/1:54,42:32:96:0.438:2	0/1:15,9:29:24:0.375:2	0/1:106,80:31:186:0.430:2	0/1:113,69:31:182:0.379:2	0/1:78,98:30:176:0.557:2	./.	0/1:1,193:31:194:0.995:2	0/1:104,95:32:200:0.477:2	0/1:93,89:32:182:0.489:2	0/1:111,86:32:197:0.437:2
chr15	86807542	rs10520617	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,45:32:97:0.464:2	./.	./.
chr15	86807761	rs10520618	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,20:32:40:0.500:2	0/1:17,14:33:31:0.452:2	./.	0/1:13,19:32:32:0.594:2	0/1:15,16:30:31:0.516:2	0/1:27,26:32:53:0.491:2	./.	0/1:0,39:33:39:1.00:2	./.	0/1:17,8:32:25:0.320:2	0/1:28,26:34:54:0.481:2
chr15	86807843	rs11857527	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,36:31:62:0.581:2	./.	./.
chr15	86807884	rs11856833	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,37:33:60:0.617:2	./.	./.
chr15	86809621	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:30:97:0.041:2	./.	./.	./.	./.
chr15	86814866	rs11858435	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,45:33:117:0.385:2	0/1:26,26:32:52:0.500:2	0/1:10,6:33:16:0.375:2	0/1:65,55:32:120:0.458:2	0/1:31,23:33:54:0.426:2	0/1:43,43:33:86:0.500:2	0/1:40,40:32:80:0.500:2	0/1:0,107:32:107:1.00:2	0/1:0,118:33:118:1.00:2	0/1:68,29:32:97:0.299:2	0/1:0,144:33:144:1.00:2
chr15	86940622	rs4362360	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,28:30:66:0.424:2	0/1:28,21:31:49:0.429:2	0/1:13,8:31:21:0.381:2	0/1:101,55:30:156:0.353:2	0/1:46,47:30:93:0.505:2	./.	0/1:72,34:31:106:0.321:2	./.	0/1:51,44:31:95:0.463:2	0/1:66,42:30:108:0.389:2	./.
chr15	86940673	rs1367647	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,7:31:25:0.280:2	./.	./.	./.	./.	./.	0/1:74,65:33:139:0.468:2	./.	./.
chr15	87217613	rs8028043	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:29:44:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,3:24:3:1.00:2	0/1:23,19:32:42:0.452:2	0/1:0,49:29:49:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,40:30:40:1.00:2	0/1:0,67:30:67:1.00:2	0/1:0,53:31:54:1.00:2	0/1:1,30:30:31:0.968:2	0/1:0,42:31:42:1.00:2
chr15	87531281	rs1006030	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,129:33:131:0.985:2	0/1:0,83:32:83:1.00:2	0/1:0,21:32:21:1.00:2	0/1:1,145:32:146:0.993:2	0/1:1,106:32:107:0.991:2	./.	./.	0/1:92,79:32:171:0.462:2	0/1:0,189:33:190:1.00:2	0/1:1,165:32:166:0.994:2	0/1:75,81:32:156:0.519:2
chr15	88576185	rs2229910	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:30:10:0.400:2	./.	0/1:85,104:29:189:0.550:2	0/1:44,77:29:121:0.636:2	./.	0/1:77,66:29:143:0.462:2	0/1:1,75:29:76:0.987:2	0/1:0,92:29:92:1.00:2	./.
chr15	88671927	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:33:143:0.028:2
chr15	88679785	rs1863480	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:32:81:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,123:31:123:1.00:2	0/1:1,158:31:159:0.994:2	0/1:1,155:31:156:0.994:2	0/1:0,173:32:173:1.00:2	0/1:0,170:32:170:1.00:2	0/1:0,109:32:109:1.00:2	0/1:0,120:32:120:1.00:2	0/1:0,95:32:95:1.00:2
chr15	88680684	rs1128994	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,103:31:103:1.00:2	./.	0/1:46,54:31:100:0.540:2	0/1:64,63:32:127:0.496:2	0/1:77,50:32:127:0.394:2	./.	./.	0/1:29,40:31:69:0.580:2
chr15	89056292	rs75714837	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:29,20:31:50:0.408:2	0/1:24,23:32:47:0.489:2	./.	./.	0/1:43,25:30:68:0.368:2	./.	./.	./.	./.	0/1:44,33:31:77:0.429:2	./.
chr15	89169484	rs3743477	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,17:33:33:0.515:2
chr15	89169614	rs3743476	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,23:32:67:0.343:2	./.	0/1:35,18:33:53:0.340:2	0/1:1,38:32:39:0.974:2	0/1:0,42:32:42:1.00:2	./.	./.	0/1:24,13:31:37:0.351:2
chr15	89169653	rs34649587	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,23:30:33:0.697:2
chr15	89169703	rs8026929	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:33:75:0.053:2	./.	./.	0/1:0,49:33:49:1.00:2	./.	./.
chr15	89169738	rs147477549	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,39:33:71:0.549:2
chr15	89169858	rs8027765	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,82:30:82:1.00:2	0/1:0,38:30:38:1.00:2	./.	0/1:0,101:29:101:1.00:2	0/1:0,171:30:171:1.00:2	0/1:2,130:29:132:0.985:2	0/1:0,137:30:137:1.00:2	0/1:0,136:29:136:1.00:2	0/1:0,104:30:104:1.00:2	0/1:0,68:31:68:1.00:2	0/1:0,97:29:97:1.00:2
chr15	89172489	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:31:107:0.037:2	./.	./.
chr15	89172558	rs3743475	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,45:31:45:1.00:2	0/1:0,20:32:20:1.00:2	./.	0/1:0,56:32:56:1.00:2	0/1:2,80:31:82:0.976:2	0/1:0,60:31:60:1.00:2	0/1:1,91:30:92:0.989:2	0/1:0,63:31:63:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,74:31:74:1.00:2
chr15	89173353	rs202015384	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,12:14:118:0.103:2	./.	./.	0/1:160,16:14:176:0.091:2	./.	./.	./.	./.
chr15	89182596	rs3200942	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,4:33:20:0.200:2	0/1:18,10:32:28:0.357:2	./.	0/1:24,14:32:38:0.368:2	0/1:10,20:32:30:0.667:2	0/1:20,10:32:30:0.333:2	0/1:16,18:33:34:0.529:2	0/1:25,15:32:40:0.375:2	./.	0/1:8,15:31:23:0.652:2	0/1:1,34:32:35:0.971:2
chr15	89195526	rs1137166	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,40:32:77:0.519:2	0/1:38,25:30:63:0.397:2	0/1:5,5:27:10:0.500:2	0/1:1,116:32:117:0.991:2	0/1:66,56:32:122:0.459:2	0/1:0,112:32:112:1.00:2	0/1:1,122:32:123:0.992:2	0/1:0,130:31:131:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,89:31:89:1.00:2
chr15	89382103	rs370626315	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,19:32:48:0.396:2
chr15	89386652	rs34949187	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:40,27:32:67:0.403:2	0/1:7,12:33:19:0.632:2	./.	0/1:37,30:33:67:0.448:2	./.	./.	./.	./.	./.	./.	./.
chr15	89388905	rs16942341	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,33:30:75:0.440:2	0/1:22,15:31:37:0.405:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	89388920	rs116981974	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,34:30:77:0.442:2	./.	./.	./.	./.	./.
chr15	89388932	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:33:91:0.044:2	./.
chr15	89391160	rs2272023	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:1,24:31:25:0.960:2	0/1:2,4:32:6:0.667:2	0/1:0,46:32:46:1.00:2	0/1:18,25:31:43:0.581:2	0/1:33,29:31:62:0.468:2	0/1:23,21:31:44:0.477:2	0/1:0,48:32:48:1.00:2	0/1:0,50:32:50:1.00:2	0/1:8,19:32:27:0.704:2	0/1:0,49:32:49:1.00:2
chr15	89392745	rs1568116	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:32:16:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,32:31:32:1.00:2	0/1:22,11:31:33:0.333:2	0/1:0,29:30:29:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,22:31:22:1.00:2
chr15	89398105	rs2351491	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,49:32:101:0.485:2	0/1:34,44:32:78:0.564:2	0/1:7,4:31:11:0.364:2	0/1:0,143:31:143:1.00:2	0/1:46,42:31:88:0.477:2	0/1:77,58:31:135:0.430:2	0/1:71,74:32:145:0.510:2	0/1:2,176:31:178:0.989:2	0/1:0,149:32:149:1.00:2	0/1:55,58:32:113:0.513:2	0/1:0,163:32:163:1.00:2
chr15	89398330	rs3743399	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:32:58:1.00:2	0/1:0,43:32:43:1.00:2	0/1:1,5:31:6:0.833:2	0/1:0,81:32:81:1.00:2	0/1:0,53:32:53:1.00:2	0/1:45,24:31:69:0.348:2	0/1:45,30:32:75:0.400:2	0/1:0,78:32:78:1.00:2	0/1:0,66:32:66:1.00:2	0/1:27,22:32:49:0.449:2	0/1:0,61:32:61:1.00:2
chr15	89398407	rs3743398	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,13:31:28:0.464:2	./.	./.	0/1:19,15:33:34:0.441:2	./.	./.
chr15	89398605	rs938608	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,25:31:49:0.510:2	0/1:16,9:31:25:0.360:2	./.	0/1:0,36:30:36:1.00:2	0/1:29,22:30:51:0.431:2	0/1:47,24:31:71:0.338:2	0/1:29,32:32:61:0.525:2	0/1:3,41:31:44:0.932:2	0/1:1,54:32:55:0.982:2	0/1:22,19:31:41:0.463:2	0/1:0,41:30:41:1.00:2
chr15	89398631	rs938609	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,26:32:52:0.500:2	0/1:16,9:32:25:0.360:2	./.	0/1:0,41:30:41:1.00:2	0/1:26,17:31:43:0.395:2	0/1:32,27:31:59:0.458:2	0/1:31,24:31:55:0.436:2	0/1:2,36:30:38:0.947:2	0/1:1,53:32:54:0.981:2	0/1:21,18:32:39:0.462:2	0/1:0,48:31:48:1.00:2
chr15	89398768	rs62023518	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,3:31:21:0.150:2	./.	./.	./.
chr15	89398825	rs4080952	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,4:28:10:0.400:2
chr15	89398882	rs28496654	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,8:30:8:1.00:2	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr15	89398939	rs11633157	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	89398996	rs113229763	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	89399110	rs62023519	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.
chr15	89399966	rs61465251	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,9:30:23:0.391:2	0/1:8,5:26:13:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	89399986	rs201822759	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:21,3:35:24:0.125:2	./.	./.	0/1:5,4:33:9:0.444:2	./.	./.	./.	./.	0/1:7,4:29:11:0.364:2	./.	0/1:12,6:30:18:0.333:2
chr15	89400023	rs12899191	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,4:31:23:0.174:2	0/1:16,4:27:20:0.200:2	./.	0/1:4,8:33:12:0.667:2	0/1:4,9:31:13:0.692:2	./.	./.	0/1:5,12:32:17:0.706:2	0/1:2,12:34:14:0.857:2	0/1:23,4:33:27:0.148:2	0/1:8,17:31:26:0.680:2
chr15	89400043	rs28559926	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,12:33:22:0.545:2	0/1:10,10:30:20:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	89400339	rs2882676	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,9:33:23:0.391:2	0/1:6,5:33:11:0.455:2	0/1:0,2:32:2:1.00:2	0/1:0,45:33:45:1.00:2	0/1:11,5:31:16:0.313:2	0/1:9,25:32:34:0.735:2	0/1:12,12:33:24:0.500:2	0/1:0,21:31:21:1.00:2	0/1:0,36:33:36:1.00:2	0/1:15,9:32:24:0.375:2	0/1:0,37:33:37:1.00:2
chr15	89400680	rs28407189	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,45:32:87:0.517:2	0/1:36,15:33:51:0.294:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	89400708	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,61:31:122:0.500:2	./.	./.	./.	./.	./.
chr15	89401109	rs4932439	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:32:53:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,68:31:68:1.00:2	0/1:0,53:31:53:1.00:2	0/1:39,29:31:68:0.426:2	0/1:36,26:31:62:0.419:2	0/1:2,68:31:70:0.971:2	0/1:0,55:32:55:1.00:2	0/1:43,20:31:63:0.317:2	0/1:0,82:32:82:1.00:2
chr15	89401615	rs3825994	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,32:29:71:0.451:2	0/1:22,12:30:34:0.353:2	0/1:3,3:27:6:0.500:2	0/1:2,86:30:88:0.977:2	0/1:20,25:30:45:0.556:2	0/1:46,18:29:64:0.281:2	0/1:47,12:30:59:0.203:2	0/1:0,83:30:83:1.00:2	0/1:0,67:30:67:1.00:2	0/1:30,34:30:64:0.531:2	0/1:2,94:28:96:0.979:2
chr15	89402051	rs1042630	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,11:29:16:0.688:2	0/1:5,4:28:9:0.444:2	./.	0/1:0,16:27:16:1.00:2	0/1:10,14:30:24:0.583:2	0/1:11,9:28:20:0.450:2	0/1:9,5:24:14:0.357:2	0/1:0,25:28:25:1.00:2	0/1:0,30:29:30:1.00:2	0/1:6,9:29:15:0.600:2	0/1:0,24:29:24:1.00:2
chr15	89402239	rs1042631	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,17:31:33:0.515:2	0/1:9,10:30:19:0.526:2	0/1:1,5:30:6:0.833:2	0/1:0,30:29:30:1.00:2	0/1:17,21:30:38:0.553:2	0/1:9,14:28:23:0.609:2	0/1:16,11:31:27:0.407:2	0/1:0,32:30:32:1.00:2	0/1:0,33:31:33:1.00:2	0/1:9,9:31:18:0.500:2	0/1:0,45:30:45:1.00:2
chr15	89402596	rs698621	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,53:29:98:0.546:2	0/1:29,34:28:63:0.540:2	0/1:4,8:29:12:0.667:2	0/1:0,119:29:119:1.00:2	0/1:60,51:29:111:0.459:2	0/1:72,63:29:135:0.467:2	0/1:66,73:29:139:0.525:2	0/1:1,142:29:143:0.993:2	0/1:1,149:29:150:0.993:2	0/1:57,36:30:93:0.387:2	0/1:3,126:29:129:0.977:2
chr15	89415247	rs3817428	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,52:32:102:0.510:2	./.	0/1:49,41:32:90:0.456:2	./.	./.	0/1:52,64:33:116:0.552:2	./.	./.
chr15	89417238	rs1126823	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,16:31:16:1.00:2	0/1:0,14:30:14:1.00:2	./.	./.	0/1:13,24:31:37:0.649:2	./.	./.	./.	0/1:13,11:29:24:0.458:2	./.	./.
chr15	89417629	rs2280465	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:3,89:32:92:0.967:2	0/1:0,42:31:42:1.00:2	./.	./.	0/1:59,41:31:100:0.410:2	./.	./.	./.	./.	./.	./.
chr15	89421327	rs2280463	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,48:32:48:1.00:2	0/1:1,15:32:16:0.938:2	./.	./.	0/1:42,26:32:68:0.382:2	./.	./.	./.	0/1:36,28:32:64:0.438:2	./.	./.
chr15	89421405	rs7182726	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,92:31:92:1.00:2	0/1:2,34:31:36:0.944:2	./.	./.	0/1:119,75:32:194:0.387:2	./.	./.	./.	./.	./.	./.
chr15	89422286	rs3809574	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:32:7:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.	0/1:3,3:27:6:0.500:2	./.	./.	./.	./.	./.	./.
chr15	89430506	rs3743395	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,129:32:132:0.985:2	0/1:0,70:31:70:1.00:2	./.	0/1:71,55:31:127:0.437:2	0/1:69,70:31:139:0.504:2	./.	./.	./.	./.	./.	./.
chr15	89450003	rs2271714	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,40:33:84:0.476:2	./.	./.
chr15	89450546	rs1878327	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,105:31:105:1.00:2	0/1:0,60:32:60:1.00:2	0/1:7,3:30:10:0.300:2	0/1:2,178:31:180:0.989:2	0/1:2,183:31:185:0.989:2	./.	0/1:106,83:31:189:0.439:2	0/1:1,187:31:188:0.995:2	0/1:108,81:32:189:0.429:2	0/1:0,146:32:146:1.00:2	0/1:87,46:31:133:0.346:2
chr15	89450587	rs1878326	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,115:31:115:1.00:2	0/1:1,76:31:77:0.987:2	0/1:8,7:31:15:0.467:2	0/1:1,176:31:178:0.994:2	0/1:2,149:31:151:0.987:2	./.	0/1:83,80:32:163:0.491:2	0/1:1,174:32:175:0.994:2	0/1:104,78:32:182:0.429:2	0/1:0,138:32:138:1.00:2	0/1:109,54:31:163:0.331:2
chr15	89453139	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,22:11:110:0.200:2	./.
chr15	89456544	rs4945	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2
chr15	89694907	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:31:99:0.040:2	./.	./.	./.	./.
chr15	89695056	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:34:186:0.022:2
chr15	89736558	rs6496562	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:73,90:33:163:0.552:2	0/1:53,46:33:99:0.465:2	./.	./.	./.	./.	0/1:109,66:33:176:0.377:2	0/1:81,75:32:156:0.481:2	0/1:103,75:33:178:0.421:2	0/1:72,77:32:149:0.517:2	0/1:97,93:33:190:0.489:2
chr15	89738492	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:33:144:0.028:2	./.	./.	./.	./.
chr15	89803950	rs62020347	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,46:31:82:0.561:2	./.	./.	./.	./.	./.	./.	./.
chr15	89804043	rs17803620	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,64:31:66:0.970:2	./.	0/1:46,34:32:80:0.425:2	0/1:71,51:31:122:0.418:2	./.	0/1:33,52:31:85:0.612:2	0/1:67,79:32:146:0.541:2
chr15	89806710	rs1981623	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:189,4:35:194:0.021:2	./.	./.	./.	0/1:0,80:32:80:1.00:2	./.	0/1:112,43:32:155:0.277:2	0/1:131,45:32:176:0.256:2	./.	0/1:113,59:32:172:0.343:2	0/1:111,54:33:165:0.327:2
chr15	89806721	rs1981624	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,72:31:72:1.00:2	./.	0/1:112,42:31:154:0.273:2	0/1:126,43:31:169:0.254:2	./.	0/1:104,58:31:162:0.358:2	0/1:107,53:32:160:0.331:2
chr15	89835937	rs139814895	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,3:33:54:0.056:2	./.	./.	./.	./.
chr15	89836228	rs2283432	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,56:32:56:1.00:2	./.	0/1:21,15:33:36:0.417:2	0/1:28,32:33:61:0.533:2	./.	0/1:40,30:33:70:0.429:2	0/1:69,52:33:121:0.430:2
chr15	89838236	rs7183618	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:33:68:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,86:33:86:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,92:34:92:1.00:2	0/1:0,85:32:85:1.00:2	0/1:1,77:33:78:0.987:2
chr15	89838318	rs35875311	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,19:31:63:0.302:2	./.	0/1:20,19:32:39:0.487:2	./.
chr15	89843566	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:34:137:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	89858602	rs1138465	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,116:28:118:0.983:2	./.	0/1:75,39:28:114:0.342:2	0/1:85,53:29:139:0.384:2	./.	0/1:63,45:28:109:0.417:2	0/1:60,50:28:111:0.455:2
chr15	89859994	rs3087374	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,27:32:63:0.429:2	./.	./.	./.	./.	./.	./.
chr15	89861826	rs2307441	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,43:33:104:0.413:2	./.	./.	./.	0/1:33,30:33:63:0.476:2
chr15	89862301	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:33:148:0.027:2	./.	./.
chr15	89876722	rs144439703	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,18:32:40:0.450:2	./.	./.	./.	./.	./.	./.	./.
chr15	90016043	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:31:141:0.028:2	./.
chr15	90023558	rs17807723	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,74:31:162:0.460:2	./.	0/1:51,70:32:121:0.579:2	0/1:70,55:32:125:0.440:2	./.
chr15	90126121	rs10775247	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,19:32:19:1.00:2	./.	0/1:3,136:33:139:0.978:2	./.	0/1:92,90:33:182:0.495:2	0/1:1,135:33:136:0.993:2	0/1:3,175:33:178:0.983:2	./.	0/1:81,105:32:186:0.565:2
chr15	90127563	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:35:80:0.050:2	./.	./.
chr15	90128966	rs11629584	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,12:32:12:1.00:2	./.	0/1:73,62:31:135:0.459:2	./.	0/1:80,61:32:141:0.433:2	0/1:96,91:32:187:0.487:2	0/1:0,120:33:120:1.00:2	./.	0/1:68,66:33:134:0.493:2
chr15	90138670	rs8042146	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,50:32:90:0.556:2	0/1:30,29:31:59:0.492:2	0/1:0,9:32:9:1.00:2	0/1:54,48:31:102:0.471:2	0/1:0,93:31:93:1.00:2	0/1:0,104:30:104:1.00:2	0/1:0,87:32:87:1.00:2	0/1:6,113:31:119:0.950:2	0/1:0,121:32:121:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,94:31:94:1.00:2
chr15	90152058	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	90161374	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,61:32:155:0.394:2	./.
chr15	90167903	rs78363401	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,30:32:52:0.577:2	0/1:13,15:31:28:0.536:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	90167996	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:33:135:0.030:2	./.	./.
chr15	90168108	rs894157	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:0,65:33:65:1.00:2	0/1:0,18:32:18:1.00:2	0/1:67,74:32:141:0.525:2	0/1:0,131:32:131:1.00:2	0/1:0,137:32:137:1.00:2	0/1:0,141:32:141:1.00:2	0/1:1,153:33:154:0.994:2	0/1:0,129:34:129:1.00:2	0/1:0,122:32:122:1.00:2	0/1:0,125:33:125:1.00:2
chr15	90168174	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:128:0.031:2	./.	./.	./.	./.	./.
chr15	90168693	rs1866928	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,37:31:38:0.974:2	0/1:0,15:30:15:1.00:2	./.	0/1:16,25:31:41:0.610:2	./.	0/1:0,55:30:55:1.00:2	0/1:28,30:31:58:0.517:2	./.	./.	0/1:0,45:31:45:1.00:2	0/1:21,8:31:29:0.276:2
chr15	90169192	rs75843552	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,16:33:23:0.696:2	./.
chr15	90169233	rs144405496	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,11:33:27:0.407:2	./.	./.	./.	./.	./.
chr15	90170237	rs3743372	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:21,15:33:36:0.417:2	0/1:14,13:32:27:0.481:2	./.	0/1:26,17:30:43:0.395:2	./.	0/1:0,59:31:59:1.00:2	0/1:19,40:31:59:0.678:2	./.	./.	0/1:0,60:32:60:1.00:2	0/1:15,25:33:40:0.625:2
chr15	90171722	rs141028210	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,9:29:22:0.409:2	./.	./.	./.	./.	./.
chr15	90174789	rs9672286	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:32:7:1.00:2	./.	0/1:0,58:30:58:1.00:2	./.	0/1:17,27:31:44:0.614:2	0/1:0,55:31:56:1.00:2	0/1:0,43:32:44:1.00:2	./.	0/1:10,13:32:23:0.565:2
chr15	90174824	rs12900805	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:29:7:1.00:2	./.	0/1:0,39:30:39:1.00:2	./.	0/1:11,12:32:23:0.522:2	0/1:1,40:32:41:0.976:2	0/1:0,29:33:29:1.00:2	./.	0/1:6,9:31:15:0.600:2
chr15	90176073	rs3803530	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:29:6:1.00:2	./.	0/1:0,29:28:29:1.00:2	./.	0/1:12,8:29:20:0.400:2	0/1:0,35:31:35:1.00:2	0/1:0,22:32:22:1.00:2	./.	0/1:19,9:31:28:0.321:2
chr15	90176432	rs3803531	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,39:32:91:0.429:2	0/1:25,19:31:44:0.432:2	0/1:0,5:31:5:1.00:2	0/1:65,46:32:111:0.414:2	0/1:0,142:32:142:1.00:2	0/1:0,105:32:105:1.00:2	0/1:1,142:32:143:0.993:2	0/1:2,137:32:139:0.986:2	0/1:0,115:33:115:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,91:30:91:1.00:2
chr15	90195967	rs8179066	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:28:43:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,11:30:11:1.00:2	0/1:34,33:30:67:0.493:2	0/1:0,53:30:53:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,38:31:38:1.00:2
chr15	90196008	rs8179065	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:15,22:29:37:0.595:2	0/1:11,12:29:23:0.522:2	./.	0/1:21,20:28:41:0.488:2	./.	0/1:0,39:29:39:1.00:2	0/1:8,16:28:24:0.667:2	./.	./.	0/1:1,47:29:48:0.979:2	0/1:8,10:30:18:0.556:2
chr15	90210257	rs2304796	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,83:31:179:0.464:2	./.	0/1:2,154:30:157:0.987:2	0/1:110,82:31:192:0.427:2	0/1:108,85:31:193:0.440:2	0/1:85,75:32:160:0.469:2	./.	0/1:57,55:31:112:0.491:2
chr15	90210263	rs2304795	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:46,48:30:94:0.511:2	0/1:29,28:28:57:0.491:2	./.	0/1:94,75:30:169:0.444:2	./.	0/1:2,164:29:166:0.988:2	0/1:112,76:30:188:0.404:2	./.	0/1:84,77:30:162:0.478:2	0/1:56,51:30:107:0.477:2	0/1:56,52:30:108:0.481:2
chr15	90210386	rs368134220	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,49:29:115:0.426:2	./.	./.	./.	./.	./.
chr15	90213229	rs6496589	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:31:17:1.00:2	0/1:0,9:31:9:1.00:2	./.	0/1:0,25:32:25:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,12:31:12:1.00:2
chr15	90226848	rs35830428	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,27:30:63:0.429:2	./.	./.	./.	./.	./.	./.	./.
chr15	90226947	rs7169981	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:31:3:1.00:2	0/1:0,37:32:38:1.00:2	0/1:0,21:31:21:1.00:2	0/1:19,4:32:23:0.174:2	0/1:0,13:31:13:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,27:33:27:1.00:2	0/1:6,5:31:11:0.455:2	0/1:16,14:32:30:0.467:2
chr15	90245033	rs77441492	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,24:32:74:0.324:2	./.	./.	./.
chr15	90245174	rs4287542	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,108:31:112:0.964:2	0/1:57,54:31:111:0.486:2	0/1:71,58:31:129:0.450:2	0/1:64,57:31:121:0.471:2	0/1:5,144:32:149:0.966:2	0/1:74,64:32:138:0.464:2	0/1:41,41:32:82:0.500:2	./.
chr15	90245253	rs4316730	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,49:32:50:0.980:2	0/1:27,16:32:43:0.372:2	0/1:33,13:31:46:0.283:2	0/1:32,9:32:41:0.220:2	0/1:2,66:32:68:0.971:2	0/1:30,20:33:50:0.400:2	0/1:15,12:33:27:0.444:2	./.
chr15	90246336	rs16974175	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,123:33:123:1.00:2	0/1:47,48:32:95:0.505:2	0/1:82,43:32:125:0.344:2	0/1:70,49:31:119:0.412:2	0/1:5,129:32:135:0.963:2	0/1:90,63:34:153:0.412:2	0/1:65,61:32:126:0.484:2	./.
chr15	90248819	rs17238056	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,145:32:145:1.00:2	0/1:2,60:32:62:0.968:2	./.	0/1:0,136:32:136:1.00:2	0/1:57,29:31:86:0.337:2	0/1:0,103:31:103:1.00:2	0/1:63,24:32:87:0.276:2	0/1:3,90:31:93:0.968:2	0/1:70,78:32:148:0.527:2	0/1:67,54:32:121:0.446:2	./.
chr15	90255284	rs112224433	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,22:33:43:0.512:2	./.	./.
chr15	90260145	rs7163367	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,30:30:30:1.00:2	0/1:6,5:29:11:0.455:2	0/1:14,12:30:26:0.462:2	0/1:4,10:31:14:0.714:2	0/1:0,17:30:17:1.00:2	0/1:19,16:30:35:0.457:2	0/1:19,8:29:27:0.296:2	./.
chr15	90321537	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,6:25:42:0.143:2	./.	./.	./.	./.	./.
chr15	90334240	rs25654	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:84,64:29:148:0.432:2	0/1:51,44:29:95:0.463:2	./.	0/1:95,97:29:192:0.505:2	./.	0/1:95,82:28:177:0.463:2	0/1:113,85:29:198:0.429:2	0/1:4,176:29:180:0.978:2	./.	0/1:98,86:29:184:0.467:2	./.
chr15	90334309	rs74766672	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,6:32:180:0.033:2	./.	./.	./.
chr15	90335534	rs25652	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,82:31:179:0.458:2	./.	0/1:116,69:31:185:0.373:2	0/1:105,76:32:181:0.420:2	0/1:118,61:32:180:0.341:2	./.	0/1:92,72:33:164:0.439:2	./.
chr15	90335788	rs25651	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:40,37:31:77:0.481:2	0/1:12,21:31:33:0.636:2	./.	0/1:56,41:32:97:0.423:2	./.	0/1:56,48:31:104:0.462:2	0/1:57,44:30:101:0.436:2	0/1:0,102:31:102:1.00:2	./.	0/1:45,28:31:73:0.384:2	./.
chr15	90344352	rs8192297	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:47,27:33:74:0.365:2	0/1:15,20:32:35:0.571:2	./.	./.	0/1:64,42:31:106:0.396:2	./.	./.	./.	./.	0/1:34,34:31:68:0.500:2	./.
chr15	90344353	rs17240212	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,52:31:99:0.525:2	./.	./.	./.	./.	./.
chr15	90344799	rs139863277	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:34:164:0.024:2	./.	./.
chr15	90346511	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:33:175:0.023:2	./.	./.	./.
chr15	90347783	rs17240240	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,28:32:63:0.452:2	./.	./.	./.	./.	./.
chr15	90347792	rs41276916	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,27:30:55:0.491:2	./.	./.	./.	./.	./.
chr15	90347814	rs17240268	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,21:30:45:0.467:2	./.	./.	./.	./.	./.
chr15	90349461	rs41276922	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,34:32:85:0.400:2	./.	./.	./.	./.	./.
chr15	90349558	rs25653	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:74,73:32:147:0.497:2	0/1:45,52:32:97:0.536:2	./.	0/1:0,184:32:184:1.00:2	./.	0/1:2,183:32:185:0.989:2	0/1:1,185:32:186:0.995:2	0/1:85,105:32:190:0.553:2	./.	0/1:101,90:32:191:0.471:2	0/1:80,108:33:188:0.574:2
chr15	90610415	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:30:69:0.058:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	90610804	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:33:4:0.750:2	./.	./.	./.	./.
chr15	90611599	rs55983968	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,13:31:24:0.542:2	./.	./.
chr15	90617388	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,5:33:84:0.060:2
chr15	90622959	rs200749761	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,55:33:110:0.500:2	./.	./.
chr15	90623052	rs2970357	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:12,19:28:31:0.613:2	0/1:9,9:26:18:0.500:2	./.	./.	0/1:34,39:27:74:0.534:2	./.	0/1:0,69:28:69:1.00:2	0/1:24,25:27:49:0.510:2	0/1:0,35:28:35:1.00:2	./.	0/1:0,37:28:37:1.00:2
chr15	90628533	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,6:25:86:0.070:2	./.	./.	./.	0/1:55,6:28:61:0.098:2	0/1:31,3:32:34:0.088:2	./.
chr15	90628537	rs11540478	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:30:81:0.049:2	./.	./.	./.	./.
chr15	90760991	rs1543116	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,10:31:30:0.333:2	./.	0/1:99,75:31:174:0.431:2	0/1:92,79:32:171:0.462:2	0/1:110,77:31:187:0.412:2	./.	0/1:109,73:33:182:0.401:2	0/1:1,164:32:165:0.994:2	./.
chr15	90764219	rs4932305	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,57:30:166:0.343:2	./.	./.	0/1:56,50:31:106:0.472:2
chr15	90768271	rs11547966	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:28:14:0.571:2	./.	./.	0/1:1,139:31:140:0.993:2	0/1:67,55:31:122:0.451:2	./.	./.	0/1:63,32:32:95:0.337:2	./.
chr15	90768320	rs11073918	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:27,37:31:64:0.578:2	0/1:19,16:32:35:0.457:2	./.	./.	./.	./.	./.	0/1:35,30:31:65:0.462:2	0/1:1,62:32:63:0.984:2	./.	0/1:0,39:31:39:1.00:2
chr15	90768959	rs908044	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,12:28:32:0.375:2	0/1:14,11:26:25:0.440:2	./.	./.	0/1:2,31:28:33:0.939:2	0/1:20,22:29:42:0.524:2	0/1:18,12:28:30:0.400:2	./.	./.	0/1:41,16:29:57:0.281:2	./.
chr15	90770795	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:30:78:0.051:2	./.	./.	./.	./.
chr15	90771521	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:30:108:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	90771704	rs3751656	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,11:29:21:0.524:2	./.	./.	./.	0/1:0,14:30:14:1.00:2	./.
chr15	90771750	rs3751655	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,25:31:25:1.00:2	0/1:0,8:29:8:1.00:2	./.	./.	0/1:1,15:29:16:0.938:2	0/1:11,9:29:20:0.450:2	0/1:13,10:30:23:0.435:2	0/1:13,3:31:16:0.188:2	0/1:0,18:31:18:1.00:2	0/1:0,12:26:12:1.00:2	0/1:0,21:30:21:1.00:2
chr15	90774259	rs1044813	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:17,16:31:33:0.485:2	0/1:14,15:33:29:0.517:2	./.	./.	./.	./.	./.	0/1:38,47:33:85:0.553:2	0/1:0,61:33:61:1.00:2	./.	0/1:34,32:32:66:0.485:2
chr15	90776911	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:131,4:30:135:0.030:2	./.	./.	./.	./.	./.	./.
chr15	90784207	rs7166441	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:29:66:1.00:2	0/1:0,39:28:39:1.00:2	0/1:0,11:28:11:1.00:2	0/1:2,93:29:95:0.979:2	0/1:0,74:28:74:1.00:2	0/1:0,98:29:98:1.00:2	0/1:0,70:29:70:1.00:2	0/1:0,102:29:102:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,64:29:64:1.00:2	0/1:0,90:29:90:1.00:2
chr15	90784250	rs7171194	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,74:30:74:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,15:30:15:1.00:2	./.	0/1:1,100:29:101:0.990:2	0/1:62,62:29:124:0.500:2	0/1:64,54:31:118:0.458:2	0/1:77,44:30:121:0.364:2	0/1:0,85:31:85:1.00:2	0/1:0,64:29:64:1.00:2	0/1:0,89:29:89:1.00:2
chr15	90784930	rs10152994	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:27,17:32:44:0.386:2	0/1:15,14:31:29:0.483:2	./.	./.	0/1:0,56:31:56:1.00:2	./.	./.	./.	./.	./.	./.
chr15	90785060	rs10153004	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:37,28:30:65:0.431:2	0/1:10,16:31:26:0.615:2	./.	./.	0/1:0,45:29:45:1.00:2	./.	./.	./.	./.	./.	./.
chr15	90794102	rs4932171	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:18,15:31:33:0.455:2	./.	0/1:1,3:32:4:0.750:2	./.	./.	./.	./.	0/1:29,10:32:39:0.256:2	0/1:0,33:31:33:1.00:2	./.	0/1:0,27:31:27:1.00:2
chr15	90794757	rs4357917	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,112:33:113:0.991:2	0/1:1,68:33:69:0.986:2	0/1:7,10:32:17:0.588:2	./.	0/1:1,196:32:197:0.995:2	./.	./.	0/1:92,101:33:193:0.523:2	0/1:0,170:33:170:1.00:2	./.	0/1:0,138:33:138:1.00:2
chr15	90794845	rs2882858	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:62,45:31:107:0.421:2	0/1:26,22:29:48:0.458:2	0/1:7,6:30:14:0.462:2	./.	./.	./.	./.	0/1:76,73:30:149:0.490:2	0/1:0,109:30:111:1.00:2	./.	0/1:0,108:30:108:1.00:2
chr15	90796558	rs12912620	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:35,36:31:71:0.507:2	0/1:38,19:31:57:0.333:2	0/1:12,5:31:17:0.294:2	./.	./.	./.	./.	0/1:64,61:31:125:0.488:2	0/1:0,94:32:94:1.00:2	./.	0/1:0,68:31:68:1.00:2
chr15	90800408	rs2063742	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:55,61:32:116:0.526:2	0/1:37,40:32:77:0.519:2	0/1:16,11:29:27:0.407:2	./.	./.	./.	./.	0/1:110,56:31:166:0.337:2	0/1:0,146:32:146:1.00:2	./.	0/1:0,153:31:154:1.00:2
chr15	90800449	rs2063743	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:35,43:31:78:0.551:2	0/1:19,33:31:52:0.635:2	0/1:6,7:31:13:0.538:2	./.	./.	./.	./.	0/1:56,31:30:87:0.356:2	0/1:0,86:30:86:1.00:2	./.	0/1:0,85:30:85:1.00:2
chr15	90814664	rs11073922	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,10:32:15:0.667:2	0/1:5,6:30:11:0.545:2	./.	./.	./.	./.	./.	./.	0/1:0,14:32:14:1.00:2	./.	0/1:13,15:32:28:0.536:2
chr15	90897952	rs8023776	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,10:30:17:0.588:2	./.	0/1:33,27:31:60:0.450:2	./.	./.	./.	./.	0/1:39,38:32:77:0.494:2	./.
chr15	90902172	rs16944267	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,23:32:39:0.590:2	./.	./.	./.	./.	./.	./.
chr15	90903311	rs2589957	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:32:7:0.571:2	0/1:44,26:33:70:0.371:2	0/1:29,18:32:47:0.383:2	./.	0/1:43,38:33:81:0.469:2	./.	0/1:1,75:34:76:0.987:2	0/1:0,37:32:37:1.00:2	0/1:41,29:34:70:0.414:2
chr15	90903370	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:32:69:0.058:2	./.
chr15	90903502	rs11854320	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,17:30:40:0.425:2	./.	./.	0/1:24,8:28:32:0.250:2	./.	./.	./.	./.
chr15	90903618	rs116910054	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:12,11:32:23:0.478:2	0/1:12,4:32:16:0.250:2	./.	./.	0/1:10,12:31:22:0.545:2	./.	./.	./.	./.	./.	./.
chr15	90992827	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:29:102:0.039:2	./.	./.	./.
chr15	91010776	rs1505936	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,32:33:49:0.653:2	0/1:21,13:32:34:0.382:2	./.	0/1:11,12:31:23:0.522:2	./.	./.	0/1:0,37:32:37:1.00:2	./.
chr15	91030238	rs138905294	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,62:34:140:0.443:2	./.	./.
chr15	91083353	rs8033595	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,54:32:55:0.982:2	0/1:0,41:32:41:1.00:2	./.	0/1:41,30:31:71:0.423:2	0/1:17,22:31:39:0.564:2	0/1:2,66:30:68:0.971:2	0/1:30,22:31:52:0.423:2	0/1:2,69:31:71:0.972:2	./.	./.	0/1:46,47:32:93:0.505:2
chr15	91161186	rs149408148	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,26:33:55:0.473:2	./.
chr15	91185291	rs71407320	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:53,43:33:96:0.448:2	0/1:25,31:32:56:0.554:2	./.	./.	0/1:78,58:32:136:0.426:2	./.	./.	./.	./.	./.	0/1:55,54:32:109:0.495:2
chr15	91292893	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:34:48:0.083:2
chr15	91310214	rs146013879	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,21:33:36:0.583:2	./.
chr15	91337479	rs2227933	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:97,67:33:164:0.409:2	0/1:47,20:32:67:0.299:2	./.	./.	./.	./.	./.	0/1:128,56:32:184:0.304:2	./.	./.	0/1:117,71:33:188:0.378:2
chr15	91346923	rs2227934	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:32,30:32:62:0.484:2	0/1:16,14:31:31:0.467:2	./.	./.	./.	./.	./.	0/1:32,24:32:56:0.429:2	./.	./.	0/1:38,14:28:52:0.269:2
chr15	91354505	rs1063147	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:14,15:32:29:0.517:2	0/1:5,13:31:18:0.722:2	./.	./.	./.	./.	./.	0/1:26,15:31:41:0.366:2	./.	./.	0/1:27,17:31:44:0.386:2
chr15	91419548	rs148110342	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,22:32:38:0.579:2	./.	./.	0/1:24,20:31:44:0.455:2	./.	./.	./.	./.
chr15	91423337	rs150925934	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,12:30:20:0.600:2	./.
chr15	91423339	rs6225	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,23:30:44:0.523:2	./.	./.	./.
chr15	91424574	rs6226	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,39:32:57:0.684:2	0/1:14,13:30:27:0.481:2	0/1:5,5:34:10:0.500:2	0/1:45,44:31:89:0.494:2	0/1:0,132:32:132:1.00:2	0/1:0,116:32:116:1.00:2	0/1:74,61:33:135:0.452:2	0/1:72,52:32:124:0.419:2	0/1:0,94:33:94:1.00:2	0/1:0,55:31:55:1.00:2	0/1:38,28:31:67:0.424:2
chr15	91428290	rs11539637	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,3:34:9:0.333:2	0/1:1,4:32:5:0.800:2	./.	0/1:13,11:33:24:0.458:2	0/1:9,4:33:13:0.308:2	./.	0/1:5,15:33:20:0.750:2	0/1:7,18:33:25:0.720:2	0/1:10,6:35:16:0.375:2	./.	0/1:9,3:32:12:0.250:2
chr15	91430436	rs2071383	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:33:68:1.00:2	0/1:0,45:32:45:1.00:2	0/1:2,11:31:13:0.846:2	0/1:0,150:33:150:1.00:2	0/1:0,177:32:177:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,193:33:193:1.00:2	0/1:0,186:32:186:1.00:2	0/1:0,108:33:108:1.00:2	0/1:43,47:32:90:0.522:2	0/1:0,98:31:99:1.00:2
chr15	91433110	rs56296062	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,84:32:172:0.488:2	./.	./.	./.	./.	./.	./.
chr15	91436419	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:148,4:33:152:0.026:2	./.	./.	./.	./.	./.	./.
chr15	91436965	rs2227989	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,20:32:50:0.400:2	./.	./.	./.	./.	./.	./.
chr15	91448573	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:31:83:0.048:2	./.	./.	./.
chr15	91448626	rs28446956	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,25:31:52:0.481:2	./.	./.	./.	./.	./.	./.
chr15	91452595	rs2106673	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:22,34:29:56:0.607:2	0/1:16,15:28:31:0.484:2	./.	0/1:28,21:29:49:0.429:2	./.	./.	./.	./.	./.	0/1:0,65:29:65:1.00:2	./.
chr15	91453378	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,3:32:37:0.081:2	./.	./.	./.	./.	./.
chr15	91455321	rs74039150	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,20:30:37:0.541:2	./.	./.	./.	./.	./.	./.
chr15	91455458	rs80163910	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,66:30:159:0.415:2	./.	0/1:3,160:30:163:0.982:2	./.	0/1:96,63:31:159:0.396:2	./.	./.
chr15	91456607	rs148391309	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,55:30:132:0.417:2
chr15	91459475	rs12909056	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,24:32:47:0.511:2
chr15	91461545	rs52828316	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,10:31:26:0.385:2	./.	./.	./.	./.	./.	./.	./.	0/1:106,79:32:186:0.427:2
chr15	91461613	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:31:75:0.053:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	91474738	rs1052535	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,26:33:55:0.473:2	0/1:19,23:33:42:0.548:2	0/1:3,5:33:8:0.625:2	0/1:26,23:33:49:0.469:2	./.	./.	./.	./.	./.	0/1:0,54:31:54:1.00:2	./.
chr15	91475274	rs34967259	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,17:28:37:0.459:2
chr15	91478544	rs17635974	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,7:27:7:1.00:2	./.
chr15	91478826	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,27:30:69:0.391:2	./.	./.	./.	./.	./.	./.	./.
chr15	91483664	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,41:30:148:0.277:2	./.	./.	./.	./.	./.	./.	./.
chr15	91486305	rs8034551	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,15:31:27:0.556:2
chr15	91489919	rs12911432	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,7:28:15:0.467:2	./.	./.	./.	./.	./.	./.	./.	0/1:31,12:28:43:0.279:2
chr15	91491388	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:33:124:0.032:2	./.	./.	./.	./.
chr15	91492877	rs749938	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:32:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	0/1:47,34:33:81:0.420:2
chr15	91496242	rs8041035	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,60:31:125:0.480:2	./.	0/1:1,113:32:114:0.991:2	./.	0/1:40,31:32:71:0.437:2	./.	./.
chr15	91499986	rs4932380	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr15	91500468	rs375163894	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,6:31:6:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	91513674	rs12911192	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:32:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	0/1:56,49:32:105:0.467:2
chr15	91524841	rs7172758	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,81:31:81:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,70:31:70:1.00:2
chr15	91525197	rs2301826	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,11:32:12:0.917:2	./.	./.	0/1:80,56:31:136:0.412:2	./.	./.	./.	0/1:1,139:32:140:0.993:2	0/1:87,84:32:171:0.491:2
chr15	91543761	rs11073964	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:31:7:1.00:2	0/1:36,39:32:75:0.520:2	0/1:0,73:31:73:1.00:2	0/1:27,31:31:58:0.534:2	0/1:0,88:32:88:1.00:2	./.	0/1:45,22:33:67:0.328:2	0/1:0,53:32:53:1.00:2	0/1:14,29:33:43:0.674:2
chr15	91548601	rs3826033	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,51:32:99:0.515:2	./.
chr15	91561061	rs11542638	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,15:31:49:0.306:2	0/1:23,12:32:35:0.343:2	0/1:1,42:32:43:0.977:2	./.	0/1:32,32:33:64:0.500:2	./.	./.
chr15	91769558	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:31:104:0.038:2	./.	./.	./.	./.	./.
chr15	91795203	rs17693706	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,52:32:82:0.634:2	./.	./.	./.	./.	./.	./.
chr15	91811749	rs3743444	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,40:29:112:0.357:2	0/1:98,75:29:173:0.434:2	./.	./.	./.	./.	./.
chr15	91825027	rs1117388	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,40:31:85:0.471:2	0/1:62,43:31:105:0.410:2	./.	./.	./.	./.	./.
chr15	91827271	rs117361551	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:46,41:28:87:0.471:2	0/1:25,35:29:60:0.583:2	./.	./.	./.	./.	0/1:62,47:28:109:0.431:2	./.	./.	./.	./.
chr15	91827438	rs34715451	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,46:29:82:0.561:2	./.	./.	./.	./.	./.	./.
chr15	92638193	rs2286355	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:32:11:1.00:2	0/1:61,53:32:114:0.465:2	0/1:1,65:32:66:0.985:2	0/1:60,55:32:115:0.478:2	0/1:1,74:32:75:0.987:2	0/1:1,100:32:101:0.990:2	0/1:62,61:33:124:0.496:2	./.	0/1:0,124:33:124:1.00:2
chr15	92647645	rs1517618	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,133:32:134:0.993:2	0/1:0,89:32:89:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,115:32:115:1.00:2	0/1:0,110:31:110:1.00:2	0/1:1,123:32:124:0.992:2	0/1:0,90:32:90:1.00:2	0/1:0,136:32:136:1.00:2	0/1:0,105:32:106:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,142:32:142:1.00:2
chr15	92981800	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:33:87:0.046:2	./.	./.	./.	./.
chr15	92987938	rs2305561	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,43:28:82:0.524:2	./.
chr15	93015427	rs1455773	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,28:32:43:0.651:2	0/1:8,19:31:27:0.704:2	0/1:7,3:32:10:0.300:2	0/1:33,23:31:56:0.411:2	./.	./.	0/1:26,14:32:41:0.350:2	./.	./.	./.	0/1:23,31:31:54:0.574:2
chr15	93198671	rs501381	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:30:62:1.00:2	0/1:0,51:29:51:1.00:2	0/1:0,20:29:20:1.00:2	0/1:2,73:29:75:0.973:2	0/1:2,58:29:60:0.967:2	0/1:0,56:30:56:1.00:2	0/1:0,36:28:36:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,31:30:31:1.00:2
chr15	93472243	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:32:164:0.024:2	./.	./.	./.
chr15	93510603	rs4777755	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,24:34:48:0.500:2	0/1:8,17:33:25:0.680:2	0/1:0,4:33:4:1.00:2	0/1:0,42:33:42:1.00:2	0/1:13,18:32:31:0.581:2	0/1:0,36:32:36:1.00:2	0/1:8,14:31:22:0.636:2	0/1:0,42:33:42:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,54:32:54:1.00:2
chr15	93515623	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:31:57:0.070:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	93521604	rs11074121	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,16:34:32:0.500:2	0/1:13,10:32:23:0.435:2	0/1:0,7:34:7:1.00:2	0/1:0,41:33:41:1.00:2	0/1:16,13:32:29:0.448:2	0/1:0,42:33:42:1.00:2	0/1:19,8:32:27:0.296:2	0/1:0,32:33:32:1.00:2	0/1:0,34:34:34:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,32:32:32:1.00:2
chr15	93536197	rs2272457	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:18,15:32:33:0.455:2	0/1:13,7:32:20:0.350:2	0/1:1,5:32:6:0.833:2	./.	./.	0/1:28,10:31:38:0.263:2	0/1:37,22:32:59:0.373:2	0/1:36,17:32:53:0.321:2	./.	0/1:17,10:31:27:0.370:2	0/1:0,48:32:48:1.00:2
chr15	93545488	rs61756301	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,20:30:48:0.417:2
chr15	93552488	rs34315566	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,33:31:73:0.452:2	./.	0/1:31,19:32:50:0.380:2	./.	./.	./.	./.
chr15	93555637	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	93567864	rs12906163	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:40,30:30:70:0.429:2	0/1:21,16:30:37:0.432:2	./.	./.	0/1:34,15:30:49:0.306:2	./.	0/1:19,13:29:32:0.406:2	0/1:34,37:30:71:0.521:2	./.	0/1:24,23:31:47:0.489:2	0/1:0,66:30:66:1.00:2
chr15	93588264	rs4299103	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.	./.	0/1:0,6:32:6:1.00:2	./.	0/1:0,4:33:4:1.00:2	./.	./.	0/1:0,8:32:8:1.00:2	./.
chr15	93588289	rs4778078	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:28:7:0.429:2	./.	0/1:0,8:30:8:1.00:2	./.	0/1:3,7:30:10:0.700:2	./.	./.	./.
chr15	93588309	rs62021480	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,5:23:11:0.455:2
chr15	93588336	rs4238485	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:32:18:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,2:30:2:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,23:32:23:1.00:2
chr15	93588423	rs201262127	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,54:33:89:0.607:2	./.	./.	./.	./.	./.
chr15	93588515	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,4:32:36:0.111:2	./.	./.	./.	./.	./.	./.	./.
chr15	94841691	rs61737195	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,9:29:22:0.409:2	0/1:5,7:31:12:0.583:2	./.	./.	./.	./.	0/1:11,6:34:17:0.353:2	./.
chr15	94884108	rs8025851	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,4:33:20:0.200:2	./.	0/1:2,32:32:34:0.941:2	./.	./.	./.	0/1:61,48:33:109:0.440:2	0/1:0,59:32:59:1.00:2	0/1:0,88:33:88:1.00:2
chr15	94945704	rs7180682	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,5:33:9:0.556:2	0/1:44,35:33:79:0.443:2	0/1:33,17:32:50:0.340:2	0/1:31,19:32:51:0.380:2	./.	0/1:5,61:33:66:0.924:2	0/1:41,26:33:67:0.388:2	0/1:32,27:33:59:0.458:2	0/1:71,34:33:105:0.324:2
chr15	94945719	rs7178698	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:33:86:1.00:2	0/1:2,36:32:38:0.947:2	0/1:0,10:32:10:1.00:2	0/1:0,86:32:86:1.00:2	0/1:35,19:32:54:0.352:2	0/1:1,54:32:55:0.982:2	./.	0/1:3,71:32:74:0.959:2	0/1:0,79:33:79:1.00:2	0/1:0,60:33:60:1.00:2	0/1:65,40:33:105:0.381:2
chr15	97327393	rs3812907	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:17,24:30:41:0.585:2	0/1:22,17:32:39:0.436:2	./.	0/1:40,21:31:61:0.344:2	./.	./.	./.	0/1:49,54:31:103:0.524:2	0/1:30,38:31:68:0.559:2	./.	./.
chr15	98504100	rs4965046	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	./.	0/1:0,2:30:2:1.00:2	0/1:0,3:26:3:1.00:2
chr15	98508911	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:33:155:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	98512376	rs61739632	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,13:32:33:0.394:2	./.	./.
chr15	98513845	rs2130882	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,52:33:54:0.963:2	0/1:1,26:31:27:0.963:2	0/1:0,2:31:2:1.00:2	0/1:36,20:32:56:0.357:2	0/1:34,23:31:57:0.404:2	0/1:31,18:31:49:0.367:2	0/1:0,35:33:35:1.00:2	0/1:42,25:32:67:0.373:2	./.	0/1:34,23:33:57:0.404:2	0/1:0,74:33:74:1.00:2
chr15	98995081	rs12101356	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:32:20:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,3:35:3:1.00:2	0/1:0,55:33:55:1.00:2	0/1:0,54:32:54:1.00:2	0/1:30,17:32:47:0.362:2	0/1:0,49:32:49:1.00:2	0/1:0,64:31:64:1.00:2	0/1:1,37:33:38:0.974:2	0/1:0,47:32:47:1.00:2	0/1:0,43:31:43:1.00:2
chr15	99023968	rs4528551	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,58:33:58:1.00:2	0/1:1,37:32:38:0.974:2	./.	0/1:39,39:33:78:0.500:2	0/1:0,34:32:34:1.00:2	0/1:22,18:32:40:0.450:2	0/1:12,21:32:33:0.636:2	0/1:43,21:32:64:0.328:2	0/1:27,26:34:53:0.491:2	0/1:22,18:32:40:0.450:2	./.
chr15	99459227	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:32:113:0.035:2	./.
chr15	99459939	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:29:104:0.038:2	./.	./.	./.	./.	./.
chr15	99465473	rs3743262	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,31:33:65:0.477:2	0/1:23,16:32:39:0.410:2	./.	./.	./.	0/1:37,39:32:76:0.513:2	./.	./.	./.	0/1:28,23:32:51:0.451:2	./.
chr15	99478225	rs2229765	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,25:31:25:1.00:2	0/1:95,62:31:157:0.395:2	./.	./.	0/1:4,161:31:165:0.976:2	0/1:97,70:31:167:0.419:2	0/1:176,6:33:182:0.033:2	0/1:63,78:31:142:0.553:2	0/1:0,154:31:154:1.00:2
chr15	99491809	rs35701313	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,33:32:65:0.508:2	./.
chr15	99500605	rs17847203	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,15:29:30:0.500:2	0/1:19,31:30:50:0.620:2	./.	./.	./.	./.	./.	./.
chr15	99511765	rs142522740	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,32:32:96:0.333:2	./.	./.	./.	./.	./.	./.
chr15	99511793	rs1521484	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,122:33:124:0.992:2	0/1:1,76:32:77:0.987:2	0/1:9,5:29:14:0.357:2	0/1:83,65:33:148:0.439:2	0/1:65,39:34:104:0.375:2	0/1:81,72:32:153:0.471:2	./.	0/1:93,77:33:170:0.453:2	0/1:2,133:34:135:0.985:2	./.	0/1:2,152:33:154:0.987:2
chr15	99511873	rs2715423	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,39:30:79:0.494:2	0/1:42,36:30:78:0.462:2	0/1:35,24:31:59:0.407:2	0/1:4,57:31:61:0.934:2	0/1:25,33:30:58:0.569:2	./.	./.	./.
chr15	99645936	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:36:2:1.00:2	./.	./.
chr15	99653800	rs2305445	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,39:31:60:0.650:2	0/1:21,20:30:41:0.488:2	0/1:5,3:32:9:0.375:2	0/1:35,26:31:61:0.426:2	0/1:34,20:31:54:0.370:2	0/1:0,62:31:62:1.00:2	0/1:2,47:31:49:0.959:2	0/1:46,40:30:86:0.465:2	0/1:21,23:31:44:0.523:2	0/1:0,32:31:32:1.00:2	0/1:0,69:31:69:1.00:2
chr15	99666973	rs369300610	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:33:102:0.040:2
chr15	99666979	rs5030691	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,25:32:46:0.543:2	0/1:33,21:32:54:0.389:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	99669628	rs3743242	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,19:32:50:0.380:2	./.	./.	./.
chr15	99670161	rs3134586	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,20:32:44:0.455:2	./.	./.	./.
chr15	99670265	rs3743244	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,22:31:31:0.710:2	./.	./.	./.	./.	./.	./.
chr15	99670278	rs3134587	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,22:30:46:0.478:2	./.	./.	./.
chr15	99670518	rs1670227	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:25,20:32:45:0.444:2	0/1:22,17:32:39:0.436:2	./.	./.	0/1:31,24:31:55:0.436:2	./.	./.	./.	./.	./.	./.
chr15	99670575	rs5030693	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:32,24:32:56:0.429:2	0/1:26,18:32:44:0.409:2	0/1:3,4:32:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr15	99670989	rs3743248	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,26:33:64:0.406:2	0/1:23,8:30:31:0.258:2	0/1:3,5:32:8:0.625:2	0/1:48,36:32:84:0.429:2	0/1:0,69:32:69:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,69:32:69:1.00:2	0/1:58,42:32:100:0.420:2	0/1:35,38:33:73:0.521:2	0/1:0,54:32:55:1.00:2	0/1:0,52:32:52:1.00:2
chr15	99671243	rs202217933	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,43:32:77:0.558:2	0/1:10,13:32:23:0.565:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	99671266	rs192270232	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,16:33:54:0.296:2	./.	./.	./.	./.	./.	./.
chr15	99671760	rs260087	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,7:31:12:0.583:2	0/1:5,8:32:13:0.615:2	./.	0/1:12,3:34:15:0.200:2	0/1:0,17:32:17:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,6:33:6:1.00:2	0/1:8,9:32:17:0.529:2	0/1:12,7:32:19:0.368:2	0/1:0,16:32:16:1.00:2	0/1:1,7:34:8:0.875:2
chr15	99671795	rs5030699	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,9:30:17:0.529:2	./.	./.	./.	./.	./.	./.
chr15	99672599	rs7167599	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,20:31:46:0.435:2	./.	./.	./.	./.	./.	./.
chr15	99672722	rs2292288	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:45,3:33:48:0.063:2	./.	0/1:66,47:32:113:0.416:2	0/1:39,37:31:76:0.487:2	0/1:0,100:31:100:1.00:2	0/1:1,90:32:91:0.989:2	0/1:86,57:32:143:0.399:2	0/1:62,54:33:116:0.466:2	0/1:0,78:32:78:1.00:2	0/1:1,107:32:109:0.991:2
chr15	99673100	rs144209117	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,39:31:108:0.364:2	./.	./.	./.	./.
chr15	99678257	rs28617660	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,20:31:41:0.488:2	0/1:19,5:31:24:0.208:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	99679655	rs181987	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,77:31:146:0.527:2	./.	./.	./.	./.	./.	./.
chr15	99715352	rs2602016	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:33:43:1.00:2	0/1:0,28:32:28:1.00:2	0/1:10,3:33:13:0.231:2	0/1:37,43:33:80:0.538:2	0/1:1,85:33:86:0.988:2	0/1:0,77:32:77:1.00:2	0/1:0,105:33:105:1.00:2	0/1:57,58:32:116:0.504:2	./.	0/1:0,68:33:68:1.00:2	0/1:0,87:33:87:1.00:2
chr15	99762052	rs76007555	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,29:30:69:0.420:2	./.	./.	./.	./.	./.
chr15	99768793	rs145188311	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:35:158:0.025:2	./.	./.	./.	./.
chr15	100211780	rs201205600	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,3:31:30:0.100:2	./.	./.	./.	./.	./.	./.
chr15	100246936	rs17854846	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,41:30:65:0.631:2	0/1:14,21:31:35:0.600:2	0/1:3,3:30:6:0.500:2	0/1:0,69:30:69:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,68:30:68:1.00:2	./.	0/1:0,78:31:78:1.00:2	0/1:33,24:30:57:0.421:2	0/1:0,54:31:54:1.00:2
chr15	100246942	rs325407	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:32:64:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,75:30:75:1.00:2	0/1:0,77:31:77:1.00:2	0/1:0,98:31:98:1.00:2	0/1:0,83:31:83:1.00:2	0/1:1,60:31:61:0.984:2	0/1:0,58:32:58:1.00:2
chr15	100252703	rs3730059	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,6:32:26:0.231:2	./.
chr15	100252805	rs325400	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,35:28:36:1.00:2	./.	0/1:1,19:29:20:0.950:2	./.	./.	./.	./.
chr15	100252892	rs34851361	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,62:29:110:0.564:2	./.
chr15	100269613	rs11852387	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,19:32:35:0.543:2	./.	./.	./.	./.	./.
chr15	100269635	rs72760587	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:14,19:31:33:0.576:2	0/1:6,13:32:19:0.684:2	./.	./.	./.	./.	./.	0/1:17,16:33:33:0.485:2	./.	0/1:16,14:32:30:0.467:2	./.
chr15	100269680	rs2061007	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	0/1:0,23:31:23:1.00:2	./.	0/1:0,42:33:42:1.00:2	0/1:18,16:32:34:0.471:2	./.	./.	./.
chr15	100269737	rs8041078	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:23,18:30:41:0.439:2	0/1:15,8:32:23:0.348:2	./.	./.	./.	./.	./.	0/1:20,17:31:37:0.459:2	./.	0/1:12,19:31:31:0.613:2	./.
chr15	100269749	rs8041089	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:28,17:31:45:0.378:2	0/1:18,7:31:25:0.280:2	./.	./.	./.	./.	./.	0/1:22,16:31:38:0.421:2	./.	0/1:13,17:32:30:0.567:2	./.
chr15	100269796	rs6598264	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,63:30:64:0.984:2	0/1:0,30:29:30:1.00:2	0/1:0,3:28:3:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,41:29:41:1.00:2	0/1:0,45:29:45:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,62:30:62:1.00:2
chr15	100514614	rs2573652	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,17:31:41:0.415:2	0/1:18,8:33:26:0.308:2	0/1:3,3:34:6:0.500:2	0/1:0,69:33:69:1.00:2	0/1:50,27:33:77:0.351:2	./.	./.	0/1:35,28:32:63:0.444:2	0/1:28,40:34:68:0.588:2	./.	0/1:0,47:32:47:1.00:2
chr15	100533362	rs374781820	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:127,4:32:131:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr15	100589154	rs117133620	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,50:31:92:0.543:2	./.	./.
chr15	100589181	rs61752831	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,49:32:142:0.345:2	./.	./.	./.	./.
chr15	100636586	rs4965583	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,21:30:51:0.420:2	./.	./.	./.	./.	./.	./.
chr15	100649208	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,4:32:78:0.051:2	./.	./.	./.	./.	./.	./.	./.
chr15	100649248	rs61752832	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,29:32:61:0.475:2	./.	./.
chr15	100657065	rs34558152	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,49:32:100:0.490:2	./.	./.	./.	./.	./.	./.
chr15	100672237	rs12907333	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:28:45:1.00:2	0/1:0,21:29:21:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,59:29:59:1.00:2	0/1:0,73:29:73:1.00:2	0/1:0,43:28:43:1.00:2	0/1:0,55:28:55:1.00:2	0/1:0,64:29:64:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,52:28:52:1.00:2	0/1:0,43:28:43:1.00:2
chr15	100692845	rs28567966	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,30:30:54:0.556:2	./.	./.	0/1:51,45:28:96:0.469:2	./.	0/1:40,45:29:85:0.529:2	0/1:20,17:27:37:0.459:2	./.
chr15	100794363	rs4369638	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,35:32:35:1.00:2	0/1:0,20:32:20:1.00:2	./.	0/1:29,21:32:50:0.420:2	0/1:9,6:31:15:0.400:2	0/1:0,23:31:23:1.00:2	0/1:1,31:31:32:0.969:2	0/1:0,60:32:60:1.00:2	0/1:0,54:32:54:1.00:2	0/1:17,23:32:40:0.575:2	0/1:0,68:33:69:1.00:2
chr15	100801698	rs4965613	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,12:33:45:0.267:2	0/1:15,9:32:24:0.375:2	0/1:0,13:32:13:1.00:2	0/1:28,28:31:56:0.500:2	0/1:19,25:32:44:0.568:2	0/1:42,39:32:81:0.481:2	0/1:1,71:33:72:0.986:2	0/1:0,59:32:59:1.00:2	0/1:0,64:34:64:1.00:2	0/1:26,19:32:45:0.422:2	0/1:40,17:32:57:0.298:2
chr15	100801707	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,27:31:58:0.466:2	./.	./.	./.	./.	./.	./.	./.
chr15	100821467	rs7496640	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,8:33:13:0.615:2	0/1:9,4:32:13:0.308:2	0/1:4,7:33:11:0.636:2	./.	./.	0/1:0,17:33:17:1.00:2	./.	0/1:2,3:33:5:0.600:2
chr15	100821576	rs7496668	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,17:31:23:0.739:2	./.	0/1:13,9:32:22:0.409:2	0/1:4,8:33:12:0.667:2	0/1:17,4:31:21:0.190:2	0/1:0,27:32:27:1.00:2	./.	0/1:13,11:32:24:0.458:2
chr15	100942962	rs2439928	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:30:63:1.00:2	0/1:0,40:29:40:1.00:2	0/1:0,2:29:2:1.00:2	0/1:0,90:30:90:1.00:2	0/1:0,72:30:72:1.00:2	0/1:0,72:30:72:1.00:2	0/1:0,86:30:86:1.00:2	0/1:1,94:29:95:0.989:2	0/1:0,94:31:94:1.00:2	0/1:0,52:29:52:1.00:2	0/1:0,70:30:70:1.00:2
chr15	100943041	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:33:59:0.068:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	101031132	rs148139207	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,13:31:33:0.394:2	0/1:13,7:30:20:0.350:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	101041896	rs1354332	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:32:54:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,11:32:11:1.00:2	0/1:46,32:32:78:0.410:2	0/1:0,39:32:39:1.00:2	0/1:0,64:33:64:1.00:2	0/1:2,40:33:42:0.952:2	0/1:0,59:32:59:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,58:33:58:1.00:2	0/1:0,66:31:66:1.00:2
chr15	101041921	rs60405735	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,44:33:93:0.473:2	./.	./.	./.	./.	./.	./.	./.
chr15	101042043	rs77089459	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,45:32:74:0.608:2	0/1:20,12:32:32:0.375:2	./.	./.	./.	./.	./.	./.	0/1:49,33:33:82:0.402:2	./.	./.
chr15	101109677	rs8451	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:30:71:1.00:2	0/1:0,36:30:36:1.00:2	0/1:4,5:31:9:0.556:2	0/1:0,90:31:90:1.00:2	0/1:35,35:31:70:0.500:2	0/1:33,27:31:60:0.450:2	./.	./.	0/1:2,112:32:114:0.982:2	./.	0/1:42,48:30:90:0.533:2
chr15	101109794	rs12157	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:31:62:1.00:2	0/1:0,37:31:37:1.00:2	0/1:14,4:31:18:0.222:2	0/1:0,69:32:69:1.00:2	0/1:32,28:31:60:0.467:2	0/1:27,40:32:67:0.597:2	./.	./.	0/1:0,106:33:106:1.00:2	./.	0/1:60,40:30:100:0.400:2
chr15	101109818	rs12460	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:31:61:1.00:2	0/1:0,36:32:36:1.00:2	0/1:14,4:31:18:0.222:2	0/1:0,69:31:69:1.00:2	0/1:29,26:31:55:0.473:2	0/1:23,36:30:60:0.610:2	./.	./.	0/1:0,84:32:84:1.00:2	./.	0/1:56,27:31:84:0.325:2
chr15	101109893	rs6598356	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,86:31:87:0.989:2	0/1:2,53:31:55:0.964:2	0/1:5,4:28:9:0.444:2	0/1:1,105:29:106:0.991:2	0/1:43,42:30:85:0.494:2	0/1:50,40:30:90:0.444:2	./.	./.	0/1:1,91:31:92:0.989:2	./.	0/1:57,38:31:95:0.400:2
chr15	101109904	rs141855950	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,52:31:87:0.598:2	./.
chr15	101110265	rs2411836	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:33:3:1.00:2	./.	./.	./.	0/1:3,4:32:7:0.571:2	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.
chr15	101110302	rs2411837	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	0/1:2,3:33:5:0.600:2	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.
chr15	101113862	rs12719734	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:32:79:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,73:31:73:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,40:31:40:1.00:2	0/1:1,75:31:76:0.987:2	0/1:0,81:32:81:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,101:32:101:1.00:2
chr15	101113950	rs12592868	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,131:33:132:0.992:2	0/1:0,68:32:68:1.00:2	0/1:7,9:32:16:0.563:2	0/1:1,150:32:151:0.993:2	0/1:66,58:31:124:0.468:2	0/1:76,55:32:131:0.420:2	./.	./.	0/1:0,139:33:139:1.00:2	./.	0/1:85,87:33:172:0.506:2
chr15	101114418	rs8039437	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,29:32:29:1.00:2	0/1:0,22:32:22:1.00:2	./.	0/1:0,16:32:16:1.00:2	0/1:12,9:31:21:0.429:2	0/1:21,12:31:33:0.364:2	./.	./.	0/1:0,24:32:24:1.00:2	./.	0/1:21,13:31:34:0.382:2
chr15	101115245	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,4:34:33:0.121:2	./.	./.
chr15	101120963	rs11247226	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,141:29:141:1.00:2	0/1:2,78:29:80:0.975:2	0/1:13,16:29:29:0.552:2	0/1:3,136:29:139:0.978:2	0/1:60,54:29:114:0.474:2	0/1:76,77:29:153:0.503:2	./.	./.	0/1:1,149:29:150:0.993:2	./.	0/1:95,83:29:178:0.466:2
chr15	101169694	rs61752833	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,23:30:60:0.383:2	./.	./.	./.	./.	./.	./.
chr15	101445815	rs3803430	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:25,34:29:59:0.576:2	0/1:8,9:28:17:0.529:2	./.	./.	./.	./.	0/1:34,13:29:47:0.277:2	./.	./.	./.	./.
chr15	101464915	rs11630691	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:54,47:28:101:0.465:2	0/1:31,20:30:51:0.392:2	0/1:9,7:26:16:0.438:2	./.	0/1:86,81:29:167:0.485:2	0/1:104,78:28:183:0.429:2	./.	0/1:86,87:29:173:0.503:2	0/1:0,141:30:141:1.00:2	0/1:56,59:30:115:0.513:2	./.
chr15	101523869	rs200045067	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:31:105:0.038:2	./.	./.	./.	./.
chr15	101529594	rs2412000	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:32:12:0.583:2	./.	./.	./.	0/1:1,79:33:80:0.988:2	./.	./.	./.	./.
chr15	101552311	rs200133283	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,22:32:55:0.400:2
chr15	101561316	rs56215707	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,40:31:70:0.571:2	./.	./.	./.	./.
chr15	101562793	rs11247253	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,15:30:15:1.00:2	0/1:0,3:32:3:1.00:2	./.	0/1:0,12:31:12:1.00:2	./.	0/1:0,5:29:5:1.00:2	0/1:4,3:32:7:0.429:2	0/1:0,6:31:6:1.00:2	./.	0/1:0,8:31:8:1.00:2	0/1:9,6:31:15:0.400:2
chr15	101567547	rs41319544	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,51:28:53:0.981:2	./.	./.	./.	0/1:10,34:29:44:0.773:2	./.	0/1:32,20:28:52:0.385:2
chr15	101589972	rs41339845	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,21:31:56:0.375:2	./.	0/1:42,32:31:74:0.432:2	./.	./.	./.	./.
chr15	101591923	rs4965778	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,22:27:55:0.400:2	0/1:12,11:27:23:0.478:2	./.	./.	./.	0/1:0,65:27:65:1.00:2	0/1:40,20:27:60:0.333:2	0/1:41,34:26:75:0.453:2	0/1:35,13:28:48:0.271:2	0/1:18,21:26:39:0.538:2	0/1:27,22:27:49:0.449:2
chr15	101595212	rs376455076	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,52:33:85:0.612:2	0/1:30,18:32:48:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	101595257	rs41372244	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,30:30:101:0.297:2	0/1:28,31:31:59:0.525:2	./.	./.	./.	0/1:54,66:30:120:0.550:2	./.	./.	0/1:75,79:31:154:0.513:2	./.	./.
chr15	101598200	rs11857803	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,39:29:86:0.453:2	0/1:39,23:32:62:0.371:2	0/1:0,7:28:7:1.00:2	0/1:1,120:30:121:0.992:2	0/1:71,39:30:110:0.355:2	./.	./.	0/1:79,90:31:169:0.533:2	./.	0/1:47,46:31:93:0.495:2	./.
chr15	101598314	rs11853661	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,30:33:68:0.441:2	0/1:15,14:30:29:0.483:2	0/1:0,6:32:6:1.00:2	0/1:0,61:32:61:1.00:2	0/1:45,26:32:71:0.366:2	./.	./.	0/1:61,55:32:116:0.474:2	./.	0/1:28,21:32:49:0.429:2	./.
chr15	101606029	rs34876840	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,27:29:40:0.692:2	./.	./.	./.	./.	./.	./.
chr15	101606261	rs3764739	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,38:33:72:0.528:2	0/1:24,30:32:54:0.556:2	./.	./.	./.	0/1:54,46:31:100:0.460:2	./.	./.	./.	./.	./.
chr15	101606889	rs2924835	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,55:31:116:0.474:2	0/1:64,51:30:115:0.443:2	0/1:48,61:31:109:0.560:2	0/1:77,63:31:140:0.450:2	0/1:52,45:31:97:0.464:2	0/1:64,70:31:134:0.522:2
chr15	101606890	rs56193104	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,55:32:116:0.474:2	0/1:63,51:30:114:0.447:2	0/1:47,61:31:108:0.565:2	0/1:72,63:33:135:0.467:2	0/1:51,45:31:96:0.469:2	0/1:64,70:31:134:0.522:2
chr15	101717680	rs8024370	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,18:31:18:1.00:2	0/1:0,138:32:139:1.00:2	0/1:64,82:31:146:0.562:2	0/1:81,73:31:154:0.474:2	0/1:69,85:31:154:0.552:2	0/1:0,146:32:146:1.00:2	0/1:66,81:33:147:0.551:2	0/1:80,72:32:152:0.474:2	0/1:102,59:31:161:0.366:2
chr15	101717888	rs62621399	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:30:14:0.286:2	./.	0/1:17,21:30:38:0.553:2	./.	0/1:26,19:31:45:0.422:2	./.	0/1:44,30:32:74:0.405:2	./.	./.
chr15	101718097	rs28364839	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:31:8:0.375:2	0/1:17,25:33:42:0.595:2	./.	./.	./.	0/1:24,27:33:51:0.529:2	./.	0/1:29,13:31:42:0.310:2	0/1:18,21:33:39:0.538:2
chr15	101718239	rs62621400	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,33:33:75:0.440:2	./.	./.	./.	./.	./.	0/1:50,20:33:70:0.286:2	./.
chr15	101718291	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:31:96:0.042:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr15	101718677	rs148193087	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,39:28:84:0.464:2	./.	./.	./.
chr15	101718700	rs2005180	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,60:31:113:0.531:2	./.	./.	./.	./.	./.	./.
chr15	101718927	rs3743193	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,65:30:155:0.419:2	./.	0/1:61,67:30:128:0.523:2	./.	./.	./.	./.	./.
chr15	101827855	rs61752834	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,48:33:85:0.565:2	0/1:26,28:32:54:0.519:2	0/1:6,3:30:9:0.333:2	0/1:55,39:32:94:0.415:2	0/1:54,26:32:80:0.325:2	./.	0/1:27,44:32:71:0.620:2	0/1:69,45:33:114:0.395:2	0/1:48,56:33:104:0.538:2	0/1:51,56:33:107:0.523:2	0/1:48,53:33:102:0.525:2
chr15	101832179	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:32:76:0.053:2	./.	./.	./.
chr15	101833248	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:174,4:31:178:0.022:2	./.	./.	./.	./.	./.	./.
chr15	101835389	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:28:38:0.105:2	./.	./.	./.
chr15	101887919	rs875292	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,30:32:66:0.455:2	./.	./.	./.
chr15	101910550	rs20543	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,23:32:50:0.460:2	0/1:23,27:31:50:0.540:2	./.	./.	./.	0/1:79,43:31:123:0.352:2	0/1:58,58:30:116:0.500:2	0/1:74,49:31:123:0.398:2	./.	./.	./.
chr15	101922323	rs1058260	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:39,23:29:62:0.371:2	0/1:22,21:29:43:0.488:2	0/1:5,8:27:13:0.615:2	./.	./.	./.	./.	0/1:87,65:29:152:0.428:2	./.	./.	./.
chr15	101924546	rs1135911	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:28:16:0.563:2	./.	0/1:40,37:29:77:0.481:2	./.	./.	./.	./.	./.	./.
chr15	102185349	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,4:33:30:0.133:2	./.
chr15	102192502	rs1127963	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,26:30:69:0.377:2	./.	./.	./.	./.
chr15	102192540	rs675436	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,4:29:4:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,4:31:4:1.00:2	./.	./.	0/1:17,9:31:26:0.346:2	0/1:12,5:31:17:0.294:2	0/1:25,9:31:34:0.265:2	./.	0/1:9,6:31:15:0.400:2	./.
chr15	102192548	rs2939587	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,2:27:2:1.00:2	0/1:0,6:24:6:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,34:26:34:1.00:2	0/1:0,20:25:20:1.00:2	0/1:9,7:29:16:0.438:2	0/1:0,14:27:14:1.00:2	0/1:0,19:25:19:1.00:2	0/1:0,12:27:12:1.00:2	0/1:0,11:26:11:1.00:2	0/1:0,6:28:6:1.00:2
chr15	102224341	rs12901450	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,108:30:110:0.991:2	0/1:56,48:30:104:0.462:2	./.	0/1:51,41:31:92:0.446:2	./.	0/1:42,31:32:73:0.425:2	0/1:1,99:32:100:0.990:2
chr15	102245872	rs79089129	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,18:34:37:0.486:2	./.
chr15	102264304	rs1143138	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	0/1:0,4:31:4:1.00:2
chr15	102264476	rs1143136	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:30:9:1.00:2	./.	./.	0/1:3,4:30:7:0.571:2	./.	0/1:4,4:32:8:0.500:2	./.	./.
chr15	102264591	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:27:3:1.00:2	./.	./.	./.
chr15	102359203	rs79724132	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,60:30:113:0.531:2	./.	./.	./.	./.	./.	./.	./.
chr15	102462385	rs199635351	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:191,5:31:196:0.026:2	./.	./.	0/1:191,4:33:195:0.021:2	./.	0/1:191,6:31:197:0.030:2	./.	./.	./.	0/1:190,4:33:194:0.021:2	./.
chr15	102462456	rs201954955	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,10:28:195:0.051:2	0/1:183,17:28:200:0.085:2	./.	./.	./.	0/1:190,8:29:198:0.040:2	0/1:183,13:27:196:0.066:2	0/1:190,7:28:197:0.036:2	0/1:184,11:30:195:0.056:2	./.	0/1:193,7:27:200:0.035:2
chr15	102462504	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,6:31:198:0.030:2	./.	./.	./.	./.	./.
chr15	102462585	rs76597942	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:141,57:32:198:0.288:2	./.	./.	./.	./.	./.	./.	./.
chr15	102462592	rs199657689	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,11:32:75:0.147:2	./.	./.	./.
chr15	102462602	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:191,6:28:197:0.030:2	./.	./.	./.	./.	./.	0/1:36,10:28:46:0.217:2	./.	0/1:10,4:29:14:0.286:2	0/1:9,3:32:12:0.250:2	./.
chr15	102462784	rs199527955	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,19:34:198:0.096:2	./.	./.
chr15	102462801	.	G	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:178,8:30:187:0.043:2	./.	./.	./.	./.	./.	0/1:185,13:30:198:0.066:2	0/1:188,4:32:192:0.021:2	0/1:190,4:33:194:0.021:2	./.	./.
chr15	102462857	rs200667206	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:178,17:33:195:0.087:2	./.	./.	./.	./.	./.	./.	./.
chr15	102462900	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant8-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:182,6:33:189:0.032:2	0/1:167,9:33:176:0.051:2	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:34:193:0.021:2
chr15	102462925	rs199932686	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:164,31:34:195:0.159:2	0/1:163,31:32:194:0.160:2	0/1:151,17:32:168:0.101:2	0/1:178,16:33:194:0.082:2	0/1:179,16:32:195:0.082:2	0/1:173,22:33:195:0.113:2	./.	0/1:173,25:33:198:0.126:2	0/1:168,27:34:195:0.138:2	0/1:174,20:33:194:0.103:2	0/1:178,17:33:195:0.087:2
chr15	102462984	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,27:32:198:0.136:2	./.	./.	./.
chr15	102463083	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:160,31:30:193:0.162:2	0/1:154,43:29:197:0.218:2	0/1:123,29:28:152:0.191:2	./.	0/1:184,12:30:196:0.061:2	0/1:181,13:30:195:0.067:2	0/1:168,27:31:195:0.138:2	0/1:180,15:29:195:0.077:2	0/1:176,20:33:196:0.102:2	0/1:176,20:29:196:0.102:2	0/1:177,14:29:193:0.073:2
chr15	102500676	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:128,21:31:150:0.141:2	0/1:90,12:32:102:0.118:2	./.	0/1:163,16:29:180:0.089:2	./.	0/1:174,10:29:184:0.054:2	./.	0/1:154,9:31:163:0.055:2	0/1:177,8:33:185:0.043:2	0/1:95,15:32:110:0.136:2	0/1:165,14:32:179:0.078:2
chr15	102500741	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:32:104:0.038:2	./.	./.	./.	./.	./.
chr15	102500754	.	C	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:77,39:32:117:0.336:2	0/1:41,19:32:61:0.317:2	0/1:11,6:29:19:0.353:2	0/1:109,18:32:127:0.142:2	0/1:64,10:31:76:0.135:2	0/1:85,27:31:112:0.241:2	0/1:31,15:32:47:0.326:2	0/1:81,33:32:115:0.289:2	0/1:117,36:33:153:0.235:2	0/1:67,27:33:94:0.287:2	0/1:153,44:33:197:0.223:2
chr15	102500789	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:95,33:31:128:0.258:2	0/1:52,16:31:68:0.235:2	0/1:9,5:31:14:0.357:2	0/1:117,28:31:145:0.193:2	0/1:49,8:31:57:0.140:2	0/1:108,30:31:138:0.217:2	0/1:40,11:32:51:0.216:2	0/1:105,26:31:131:0.198:2	0/1:134,37:32:171:0.216:2	0/1:89,22:31:111:0.198:2	0/1:170,26:32:196:0.133:2
chr16	64384	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.
chr16	64434	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,5:30:153:0.033:2	./.	./.	./.
chr16	64458	rs12444477	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,12:30:14:0.857:2	0/1:2,138:31:140:0.986:2	./.	./.	0/1:5,92:30:97:0.948:2	0/1:11,103:31:114:0.904:2	0/1:6,66:33:72:0.917:2	./.	./.
chr16	64480	rs367650850	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:32:5:1.00:2	0/1:0,12:32:12:1.00:2	./.	./.	0/1:36,4:31:40:0.100:2	0/1:59,7:28:66:0.106:2	./.	0/1:69,7:31:76:0.092:2	0/1:50,5:33:55:0.091:2	0/1:1,6:27:7:0.857:2	0/1:37,10:33:49:0.213:2
chr16	64497	rs4620958	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,4:32:12:0.333:2	0/1:12,3:32:15:0.200:2	./.	./.	./.	0/1:52,3:33:55:0.055:2	./.	./.	0/1:44,6:34:50:0.120:2	0/1:4,6:31:10:0.600:2	0/1:40,10:33:50:0.200:2
chr16	64637	rs370529971	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,4:32:14:0.286:2	0/1:128,66:31:194:0.340:2	./.	./.	0/1:131,55:31:187:0.296:2	0/1:158,38:32:196:0.194:2	0/1:149,45:32:194:0.232:2	./.	./.
chr16	64697	.	G	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:52,13:32:66:0.200:2	0/1:36,4:30:40:0.100:2	./.	0/1:70,7:32:77:0.091:2	0/1:57,9:31:66:0.136:2	0/1:78,8:30:86:0.093:2	0/1:82,5:33:87:0.057:2	0/1:49,4:32:53:0.075:2	0/1:78,5:32:83:0.060:2	0/1:41,6:33:47:0.128:2	0/1:73,7:34:80:0.088:2
chr16	64711	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:30:36:0.111:2	./.
chr16	64727	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,12:32:40:0.300:2	0/1:21,6:31:27:0.222:2	./.	0/1:53,8:31:61:0.131:2	0/1:39,9:31:48:0.188:2	0/1:44,8:30:52:0.154:2	0/1:39,7:32:46:0.152:2	0/1:38,5:32:43:0.116:2	0/1:36,5:32:41:0.122:2	0/1:24,5:32:29:0.172:2	0/1:50,7:31:57:0.123:2
chr16	64728	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,5:30:52:0.096:2	0/1:42,4:32:46:0.087:2	./.	./.	./.	./.
chr16	64735	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:17,20:28:37:0.541:2	0/1:12,6:28:18:0.333:2	./.	0/1:48,4:30:52:0.077:2	./.	0/1:37,9:27:46:0.196:2	./.	0/1:29,6:30:35:0.171:2	./.	./.	./.
chr16	65505	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	65550	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:36:4:0.500:2	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	65561	rs201668686	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:33:4:1.00:2	0/1:6,54:31:60:0.900:2	./.	./.	0/1:6,44:32:50:0.880:2	0/1:4,42:32:46:0.913:2	0/1:4,33:32:37:0.892:2	./.	./.
chr16	67604	rs4021659	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,10:32:13:0.769:2	0/1:1,5:32:6:0.833:2	./.	0/1:123,9:33:132:0.068:2	0/1:63,6:32:69:0.087:2	0/1:79,7:31:86:0.081:2	0/1:72,7:32:79:0.089:2	0/1:154,6:31:160:0.038:2	0/1:104,6:33:110:0.055:2	0/1:0,7:32:7:1.00:2	0/1:37,9:31:46:0.196:2
chr16	67631	rs201909689	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,3:33:62:0.048:2	./.	./.	./.	./.	./.
chr16	67686	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,4:31:22:0.182:2	./.	./.	./.	./.	0/1:12,3:33:15:0.200:2	./.	0/1:7,6:32:13:0.462:2
chr16	74287	rs184115979	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,4:32:4:1.00:2	./.	./.	0/1:109,6:33:115:0.052:2	0/1:59,6:31:65:0.092:2	./.	./.	0/1:148,5:31:154:0.033:2	0/1:93,5:29:98:0.051:2	0/1:0,8:32:8:1.00:2	0/1:54,5:32:59:0.085:2
chr16	103517	rs183360	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,45:29:46:0.978:2	0/1:0,31:30:31:1.00:2	0/1:0,7:29:7:1.00:2	0/1:1,134:30:135:0.993:2	0/1:0,186:30:186:1.00:2	0/1:0,141:30:141:1.00:2	0/1:0,124:30:124:1.00:2	0/1:0,135:30:135:1.00:2	0/1:0,101:30:101:1.00:2	0/1:0,82:30:82:1.00:2	0/1:0,57:30:57:1.00:2
chr16	105869	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,4:31:104:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr16	107162	rs10266	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:68,63:29:132:0.481:2	0/1:36,30:30:66:0.455:2	0/1:10,3:31:13:0.231:2	./.	./.	0/1:65,66:30:131:0.504:2	./.	0/1:80,68:30:148:0.459:2	./.	0/1:48,53:30:101:0.525:2	0/1:69,59:30:128:0.461:2
chr16	108585	rs216598	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,73:29:74:0.986:2	0/1:0,48:27:48:1.00:2	0/1:8,7:30:15:0.467:2	0/1:0,129:30:129:1.00:2	0/1:87,55:29:142:0.387:2	0/1:60,61:30:121:0.504:2	0/1:2,128:28:130:0.985:2	0/1:0,133:29:133:1.00:2	0/1:0,85:29:85:1.00:2	0/1:0,85:28:85:1.00:2	0/1:55,41:29:96:0.427:2
chr16	111442	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:125,4:31:129:0.031:2	./.	./.	./.	./.	0/1:77,4:31:81:0.049:2	./.
chr16	111444	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:125,4:30:129:0.031:2	./.	./.	./.	./.	0/1:75,4:30:79:0.051:2	./.
chr16	111451	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:32:84:0.048:2	./.
chr16	113924	rs216605	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,16:31:54:0.296:2	0/1:17,7:32:24:0.292:2	./.	./.	./.	0/1:37,22:31:59:0.373:2	./.	0/1:51,21:32:72:0.292:2	./.	0/1:26,18:32:44:0.409:2	0/1:35,20:31:55:0.364:2
chr16	114784	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:32:55:0.073:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	136842	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.	./.	./.	./.
chr16	216593	rs141494605	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,36:31:108:0.333:2	./.	./.	./.
chr16	230578	rs11863726	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:31:5:1.00:2	./.	./.	./.	./.	./.	./.	0/1:1,3:30:4:0.750:2
chr16	230684	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,4:32:24:0.167:2	./.	./.	./.	./.	./.	./.
chr16	231021	rs144961211	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,16:27:34:0.471:2	./.	./.	./.	./.	./.	./.
chr16	240555	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:33:114:0.035:2
chr16	304514	rs3213508	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,13:31:37:0.351:2	0/1:0,26:30:26:1.00:2	0/1:19,32:30:51:0.627:2	./.	./.	./.	0/1:16,8:31:24:0.333:2	./.
chr16	318822	rs114887633	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,37:32:72:0.514:2
chr16	319511	rs739999	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,31:26:72:0.431:2	0/1:44,29:28:73:0.397:2	./.	./.	./.	./.	./.
chr16	320759	rs9806942	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,59:31:119:0.496:2	0/1:50,27:30:77:0.351:2	./.	./.	./.	./.	./.
chr16	322934	rs9940585	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	0/1:5,4:29:9:0.444:2	./.	0/1:2,11:29:13:0.846:2	0/1:0,11:31:12:1.00:2	./.	0/1:10,3:29:13:0.231:2
chr16	324052	rs2685126	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,15:32:23:0.652:2	./.	./.	0/1:8,8:32:16:0.500:2	0/1:12,13:32:25:0.520:2	0/1:0,14:32:14:1.00:2	./.	0/1:8,15:31:23:0.652:2
chr16	334580	rs432925	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,25:28:47:0.532:2	0/1:14,17:28:31:0.548:2	./.	0/1:35,27:29:62:0.435:2	0/1:56,37:27:93:0.398:2	0/1:47,48:28:95:0.505:2	0/1:40,56:27:96:0.583:2	./.	0/1:34,18:26:52:0.346:2	0/1:19,28:28:47:0.596:2	0/1:2,43:27:45:0.956:2
chr16	334732	rs45593734	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:29:5:0.800:2	./.	./.	./.	./.	./.	./.	./.
chr16	334890	rs419949	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:30:10:0.400:2	./.	0/1:48,37:31:85:0.435:2	./.	./.	./.	0/1:28,27:33:55:0.491:2	0/1:27,18:32:45:0.400:2	0/1:17,22:31:39:0.564:2
chr16	335185	rs45503892	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,25:34:56:0.446:2	./.	./.
chr16	335373	rs2685127	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,23:32:45:0.511:2	0/1:17,21:32:38:0.553:2
chr16	335619	rs45612235	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,35:31:93:0.376:2	./.	./.	./.	./.	./.
chr16	336377	rs45529833	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,54:31:103:0.524:2	./.	./.	./.	./.	./.
chr16	336396	rs400037	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,5:29:20:0.250:2	./.	0/1:49,37:32:86:0.430:2	./.	./.	./.	0/1:78,60:34:138:0.435:2	0/1:57,74:32:131:0.565:2	0/1:101,89:32:190:0.468:2
chr16	336660	rs11647490	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:37,28:32:65:0.431:2	0/1:19,12:32:31:0.387:2	./.	0/1:34,42:33:76:0.553:2	0/1:65,49:32:114:0.430:2	0/1:30,41:32:71:0.577:2	0/1:65,61:32:126:0.484:2	0/1:1,76:32:77:0.987:2	0/1:42,31:33:73:0.425:2	./.	./.
chr16	336916	rs1048786	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:15,15:31:30:0.500:2	0/1:3,3:32:6:0.500:2	./.	0/1:8,12:29:20:0.600:2	./.	./.	0/1:8,7:31:15:0.467:2	./.	./.	0/1:6,15:29:21:0.714:2	0/1:15,11:29:26:0.423:2
chr16	338237	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,5:33:159:0.031:2	./.	./.	./.
chr16	339499	rs113073289	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,52:32:90:0.578:2	./.	./.	./.	./.	./.	./.
chr16	347184	rs214252	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	0/1:29,20:31:49:0.408:2	0/1:30,31:31:61:0.508:2	./.	./.	0/1:29,29:32:58:0.500:2	0/1:23,16:32:39:0.410:2	0/1:21,19:30:40:0.475:2
chr16	348021	rs146947903	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:34:6:0.500:2	./.	./.
chr16	348222	rs214250	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	0/1:26,9:30:35:0.257:2	0/1:10,9:29:19:0.474:2	./.	./.	0/1:12,6:31:18:0.333:2	0/1:8,8:31:16:0.500:2	0/1:9,5:30:14:0.357:2
chr16	396264	rs1805105	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,32:29:59:0.542:2	0/1:8,13:29:21:0.619:2	0/1:7,5:30:12:0.417:2	0/1:32,32:29:64:0.500:2	0/1:37,23:29:60:0.383:2	0/1:43,28:29:71:0.394:2	0/1:62,34:28:96:0.354:2	0/1:0,65:28:65:1.00:2	0/1:0,41:29:41:1.00:2	0/1:0,43:28:43:1.00:2	0/1:37,32:29:69:0.464:2
chr16	417757	rs13226	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,69:32:163:0.423:2	./.	./.	./.	0/1:84,62:33:146:0.425:2	./.	./.
chr16	418406	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,4:32:91:0.044:2	./.	./.	./.	./.	./.	./.	./.
chr16	419092	rs3830160	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:53,30:28:83:0.361:2	0/1:28,30:28:58:0.517:2	./.	0/1:66,45:29:111:0.405:2	0/1:90,93:29:183:0.508:2	0/1:108,72:29:180:0.400:2	0/1:87,80:28:167:0.479:2	0/1:0,190:28:190:1.00:2	0/1:2,104:29:106:0.981:2	0/1:68,56:28:124:0.452:2	0/1:58,40:28:98:0.408:2
chr16	419154	rs1802752	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:77,41:33:118:0.347:2	0/1:42,30:32:72:0.417:2	./.	0/1:99,80:32:179:0.447:2	./.	./.	0/1:96,83:31:179:0.464:2	./.	./.	0/1:97,79:32:176:0.449:2	0/1:84,56:32:140:0.400:2
chr16	419614	rs77929579	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:111,47:31:158:0.297:2	./.	./.	./.	0/1:71,19:31:90:0.211:2	./.	./.
chr16	419617	rs73490311	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:114,43:28:157:0.274:2	./.	./.	./.	0/1:65,24:30:89:0.270:2	./.	./.
chr16	419636	rs424224	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:127,28:32:155:0.181:2	./.	./.	./.	0/1:66,13:33:79:0.165:2	./.	./.
chr16	419639	rs199621003	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:133,28:27:161:0.174:2	./.	./.	./.	0/1:69,13:30:82:0.159:2	./.	./.
chr16	420140	rs3194151	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:7,24:31:31:0.774:2	0/1:15,8:31:23:0.348:2	./.	0/1:14,25:31:39:0.641:2	./.	./.	0/1:24,22:31:46:0.478:2	./.	./.	0/1:11,14:31:25:0.560:2	0/1:16,18:31:34:0.529:2
chr16	420179	rs11557300	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:6,14:30:20:0.700:2	0/1:15,3:30:18:0.167:2	./.	./.	./.	./.	./.	./.	./.	0/1:1,6:29:7:0.857:2	0/1:5,12:31:17:0.706:2
chr16	424288	rs74000555	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,26:32:50:0.520:2	./.	./.	./.	./.	./.
chr16	426184	rs57780883	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,28:31:55:0.509:2	./.	./.	./.	./.	./.
chr16	426329	rs201662264	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,10:14:70:0.143:2	./.
chr16	426432	rs2071915	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,9:29:26:0.346:2	0/1:7,8:29:15:0.533:2	./.	0/1:21,22:28:43:0.512:2	0/1:23,18:25:41:0.439:2	0/1:19,18:28:37:0.486:2	0/1:12,13:28:25:0.520:2	0/1:0,47:28:47:1.00:2	0/1:0,32:28:32:1.00:2	0/1:17,17:29:34:0.500:2	0/1:14,9:27:23:0.391:2
chr16	427112	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,15:32:30:0.500:2
chr16	427479	rs11248931	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:40,13:27:53:0.245:2	0/1:12,5:31:17:0.294:2	./.	0/1:38,16:27:54:0.296:2	./.	0/1:36,20:28:56:0.357:2	0/1:37,5:29:42:0.119:2	0/1:1,18:27:19:0.947:2	0/1:0,20:28:20:1.00:2	0/1:32,15:26:47:0.319:2	0/1:15,14:26:29:0.483:2
chr16	427516	rs11649031	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:40,11:33:51:0.216:2	0/1:16,6:33:22:0.273:2	./.	0/1:44,7:32:51:0.137:2	./.	0/1:35,14:31:49:0.286:2	0/1:28,4:33:32:0.125:2	0/1:1,14:31:15:0.933:2	0/1:0,22:32:22:1.00:2	0/1:36,10:31:46:0.217:2	0/1:13,9:33:22:0.409:2
chr16	427699	rs150713114	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,17:32:22:0.773:2
chr16	427784	rs11641742	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,25:32:49:0.510:2	0/1:21,24:31:45:0.533:2	./.	0/1:78,42:31:121:0.350:2	0/1:76,59:31:135:0.437:2	0/1:66,48:31:114:0.421:2	0/1:74,51:31:125:0.408:2	0/1:1,115:31:116:0.991:2	0/1:2,81:32:83:0.976:2	0/1:38,39:31:77:0.506:2	0/1:37,45:32:82:0.549:2
chr16	427820	rs12922073	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,23:31:54:0.426:2	0/1:21,26:31:47:0.553:2	./.	0/1:83,40:31:123:0.325:2	0/1:73,57:31:130:0.438:2	0/1:57,35:30:92:0.380:2	0/1:61,49:32:110:0.445:2	0/1:3,99:31:102:0.971:2	0/1:1,71:32:72:0.986:2	0/1:35,47:31:82:0.573:2	0/1:36,34:29:70:0.486:2
chr16	447925	rs74784460	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,7:32:11:0.636:2
chr16	449345	rs763151	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,89:32:180:0.494:2	0/1:92,80:33:172:0.465:2	./.	0/1:0,130:33:130:1.00:2	0/1:82,48:34:130:0.369:2	0/1:77,52:33:129:0.403:2	./.
chr16	449659	rs14293	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,62:31:130:0.477:2	0/1:45,38:31:83:0.458:2	./.	0/1:0,131:32:131:1.00:2	0/1:48,36:32:84:0.429:2	0/1:40,38:32:78:0.487:2	./.
chr16	450165	rs448063	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,56:31:124:0.452:2	0/1:48,47:32:95:0.495:2	./.	0/1:0,91:32:91:1.00:2	0/1:48,24:33:72:0.333:2	0/1:50,25:32:76:0.333:2	0/1:40,48:31:88:0.545:2
chr16	450309	rs5841	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,20:31:46:0.435:2	0/1:14,8:30:22:0.364:2	./.	0/1:0,45:31:45:1.00:2	0/1:19,21:32:40:0.525:2	0/1:13,9:30:22:0.409:2	./.
chr16	455646	rs873477	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,33:32:65:0.508:2	0/1:43,55:32:98:0.561:2	./.	0/1:0,72:32:72:1.00:2	0/1:34,35:32:69:0.507:2	0/1:53,47:31:100:0.470:2	0/1:62,28:32:90:0.311:2
chr16	456416	rs3743890	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,12:32:12:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,15:32:15:1.00:2	0/1:21,8:32:30:0.276:2	0/1:9,7:31:16:0.438:2	0/1:0,16:32:16:1.00:2	./.	0/1:22,15:34:37:0.405:2	0/1:20,4:33:24:0.167:2	0/1:13,5:33:18:0.278:2
chr16	538995	rs150937967	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,22:30:47:0.468:2	./.	./.
chr16	547246	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,4:31:99:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr16	547297	rs2301487	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,73:32:156:0.468:2	./.	./.	./.	./.	./.	./.	./.
chr16	570557	rs11537754	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,64:29:65:0.985:2	0/1:59,57:29:116:0.491:2	./.	0/1:66,53:28:119:0.445:2	0/1:0,72:29:72:1.00:2	0/1:43,48:30:91:0.527:2	0/1:26,34:30:60:0.567:2	./.
chr16	597112	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	599342	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.
chr16	599408	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,4:33:21:0.190:2	./.
chr16	601607	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:34:3:0.667:2
chr16	601632	rs3213574	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:5,4:29:9:0.444:2	0/1:2,5:28:7:0.714:2	./.	./.	./.	./.	0/1:8,5:28:13:0.385:2	0/1:0,9:29:9:1.00:2	0/1:9,3:33:12:0.250:2	./.	./.
chr16	602313	rs9930550	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.
chr16	603471	rs11248937	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:33,18:31:51:0.353:2	0/1:17,11:29:28:0.393:2	./.	./.	0/1:40,15:29:55:0.273:2	./.	0/1:28,18:31:46:0.391:2	0/1:0,45:31:45:1.00:2	0/1:0,57:31:57:1.00:2	0/1:21,20:31:41:0.488:2	0/1:33,16:31:49:0.327:2
chr16	624114	rs2071979	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:15,3:31:18:0.167:2	0/1:12,4:32:16:0.250:2	./.	./.	0/1:21,4:32:25:0.160:2	./.	0/1:13,4:30:17:0.235:2	0/1:5,7:33:12:0.583:2	./.	0/1:0,10:32:10:1.00:2	./.
chr16	624503	rs33997204	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:29:41:0.100:2	./.
chr16	624713	rs4984669	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.	./.	./.	0/1:0,3:28:3:1.00:2	0/1:2,4:31:6:0.667:2	./.	0/1:0,3:32:3:1.00:2	./.
chr16	626185	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,4:32:27:0.148:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	630902	rs1045274	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,33:32:69:0.478:2	./.	0/1:10,13:32:23:0.565:2	./.
chr16	632231	rs372699184	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,3:33:50:0.060:2	./.	./.	./.	./.	./.	./.
chr16	632233	rs62030874	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:27,9:33:36:0.250:2	0/1:33,7:31:40:0.175:2	./.	./.	./.	./.	0/1:37,9:30:46:0.196:2	./.	./.	0/1:0,6:31:6:1.00:2	./.
chr16	632283	rs7187227	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,15:32:47:0.319:2	./.	0/1:2,21:31:23:0.913:2	./.
chr16	633125	rs1045277	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:37,39:30:76:0.513:2	0/1:10,17:30:27:0.630:2	0/1:11,4:32:15:0.267:2	./.	0/1:82,70:31:152:0.461:2	./.	0/1:57,36:30:93:0.387:2	0/1:57,59:30:116:0.509:2	./.	0/1:0,52:30:52:1.00:2	./.
chr16	633353	rs710924	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:14,10:32:24:0.417:2	0/1:6,4:33:10:0.400:2	./.	./.	0/1:25,9:31:34:0.265:2	./.	0/1:16,12:33:28:0.429:2	0/1:14,17:32:31:0.548:2	./.	0/1:0,28:33:28:1.00:2	./.
chr16	633354	rs112194445	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:14,10:29:24:0.417:2	0/1:6,4:31:10:0.400:2	./.	./.	0/1:25,9:29:34:0.265:2	./.	0/1:16,12:31:28:0.429:2	0/1:14,17:31:31:0.548:2	./.	0/1:0,29:31:29:1.00:2	./.
chr16	681280	rs4984905	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.
chr16	700644	rs13337278	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,46:32:104:0.442:2	./.	./.	./.	./.	./.	0/1:0,76:33:76:1.00:2	./.
chr16	701656	rs11642546	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:15,9:33:24:0.375:2	0/1:9,9:32:18:0.500:2	./.	./.	./.	./.	0/1:18,5:31:23:0.217:2	0/1:16,12:31:28:0.429:2	./.	./.	./.
chr16	703738	rs113601268	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,62:31:114:0.544:2	./.
chr16	705360	rs3803697	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	0/1:0,3:19:3:1.00:2	./.
chr16	705795	rs12599798	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,10:31:22:0.455:2	./.	./.	./.	./.	./.	0/1:0,13:30:13:1.00:2	./.
chr16	705844	rs8051645	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:7,5:32:12:0.417:2	0/1:14,6:34:20:0.300:2	0/1:2,4:33:6:0.667:2	0/1:28,21:33:49:0.429:2	./.	./.	0/1:8,20:31:28:0.714:2	0/1:44,26:32:70:0.371:2	./.	0/1:0,32:32:32:1.00:2	./.
chr16	706534	rs28485323	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:2,5:32:7:0.714:2	0/1:5,3:30:8:0.375:2	./.	./.	./.	./.	0/1:2,3:29:5:0.600:2	0/1:5,6:31:11:0.545:2	./.	./.	./.
chr16	708275	rs45613635	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:30,23:32:53:0.434:2	0/1:14,23:30:37:0.622:2	0/1:5,6:30:11:0.545:2	./.	./.	./.	0/1:66,57:31:123:0.463:2	0/1:52,53:31:105:0.505:2	./.	./.	./.
chr16	708965	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:33:68:0.059:2	./.
chr16	709001	rs4984906	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,22:31:60:0.367:2	0/1:16,16:32:32:0.500:2	0/1:11,3:32:14:0.214:2	0/1:49,41:31:90:0.456:2	./.	./.	0/1:98,85:31:183:0.464:2	0/1:88,61:31:149:0.409:2	./.	0/1:0,86:32:86:1.00:2	./.
chr16	709152	rs7184667	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,8:27:20:0.400:2	./.	./.	./.	./.	./.	0/1:0,14:27:14:1.00:2	./.
chr16	711712	rs3177415	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,25:31:60:0.417:2	0/1:14,15:31:30:0.517:2	0/1:2,7:30:9:0.778:2	0/1:33,18:30:51:0.353:2	./.	./.	0/1:18,38:30:56:0.679:2	0/1:27,28:29:55:0.509:2	./.	0/1:0,39:30:39:1.00:2	./.
chr16	711905	rs2301426	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:14,12:30:26:0.462:2	0/1:10,7:28:17:0.412:2	./.	0/1:16,17:29:33:0.515:2	./.	./.	0/1:31,10:30:41:0.244:2	0/1:23,28:30:51:0.549:2	./.	0/1:0,26:29:26:1.00:2	./.
chr16	712020	rs200400782	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:31:6:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	715745	rs199662983	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,90:31:184:0.489:2	./.	./.	./.	./.	./.	./.	./.
chr16	715990	rs7190775	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:6,5:30:11:0.455:2	./.	./.	./.	./.	./.	0/1:2,4:33:6:0.667:2	0/1:3,4:33:7:0.571:2	./.	0/1:1,5:32:6:0.833:2	./.
chr16	716273	rs11866949	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,16:28:67:0.239:2	./.	./.	./.	./.	./.	0/1:0,61:29:61:1.00:2	0/1:71,5:25:76:0.066:2
chr16	716287	rs9934288	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,15:30:64:0.234:2	./.	./.	./.	./.	./.	0/1:25,22:31:47:0.468:2	0/1:66,4:31:70:0.057:2
chr16	717523	rs3752493	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,15:29:25:0.600:2	0/1:12,6:33:18:0.333:2	0/1:2,3:32:5:0.600:2	0/1:26,43:31:69:0.623:2	./.	./.	0/1:29,27:31:56:0.482:2	0/1:68,50:30:118:0.424:2	./.	0/1:0,50:30:50:1.00:2	./.
chr16	717544	rs3752492	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,37:29:53:0.698:2	./.	./.	./.	./.	./.	0/1:0,48:27:48:1.00:2	./.
chr16	718514	rs7204542	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,4:31:5:0.800:2	0/1:2,3:30:5:0.600:2	0/1:0,15:28:15:1.00:2	0/1:0,21:29:21:1.00:2	0/1:9,4:27:13:0.308:2	0/1:4,8:31:12:0.667:2	0/1:21,12:29:33:0.364:2	0/1:0,14:26:14:1.00:2	./.	0/1:0,5:27:5:1.00:2
chr16	719592	rs11557858	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,14:29:40:0.350:2	./.	./.	./.	./.	./.	0/1:0,50:31:50:1.00:2	./.
chr16	720152	rs3752487	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,10:31:20:0.500:2	./.	./.	./.	./.	./.	0/1:7,16:29:23:0.696:2	./.
chr16	720310	rs142941625	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,3:33:53:0.057:2	./.	./.
chr16	720960	rs3743912	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:30:12:0.583:2	./.	./.	./.	./.	./.	0/1:0,17:32:17:1.00:2	./.
chr16	720986	rs1139897	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:9,6:32:15:0.400:2	0/1:3,6:32:9:0.667:2	./.	./.	./.	./.	0/1:2,3:33:5:0.600:2	0/1:2,11:32:13:0.846:2	./.	./.	./.
chr16	722288	rs138164898	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,25:33:45:0.556:2	./.
chr16	722331	rs3177338	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,22:32:41:0.537:2	0/1:11,11:32:22:0.500:2	0/1:6,3:32:9:0.333:2	0/1:10,21:32:31:0.677:2	0/1:35,23:32:58:0.397:2	./.	0/1:24,35:31:59:0.593:2	0/1:24,30:32:54:0.556:2	./.	0/1:0,38:33:38:1.00:2	./.
chr16	722548	rs1128550	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,12:30:21:0.571:2	0/1:10,13:33:23:0.565:2	./.	0/1:32,27:31:59:0.458:2	0/1:42,46:32:88:0.523:2	./.	0/1:45,26:31:71:0.366:2	0/1:30,23:33:53:0.434:2	./.	0/1:0,32:33:32:1.00:2	./.
chr16	732797	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:32:110:0.036:2
chr16	733572	rs187664088	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,21:30:44:0.477:2	./.	./.	./.
chr16	733604	rs79868981	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,13:31:35:0.371:2	./.
chr16	735120	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,6:29:40:0.150:2	./.
chr16	735921	rs763053	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:39,18:28:57:0.316:2	0/1:20,16:30:36:0.444:2	0/1:1,6:29:7:0.857:2	./.	./.	./.	0/1:61,59:30:120:0.492:2	0/1:65,44:29:109:0.404:2	./.	./.	./.
chr16	737269	rs17850290	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,15:30:33:0.469:2	0/1:18,11:28:29:0.379:2	./.	0/1:9,10:29:19:0.526:2
chr16	746884	rs4984683	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:12,13:33:25:0.520:2	0/1:6,17:32:23:0.739:2	0/1:0,5:32:5:1.00:2	./.	./.	./.	0/1:17,28:32:45:0.622:2	0/1:32,20:32:52:0.385:2	./.	./.	./.
chr16	746914	rs4984915	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:24,11:31:35:0.314:2	0/1:9,17:32:26:0.654:2	0/1:0,7:32:7:1.00:2	./.	./.	./.	0/1:28,40:32:68:0.588:2	0/1:49,33:32:82:0.402:2	./.	./.	./.
chr16	772061	rs55956436	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:9,12:32:21:0.571:2	0/1:5,9:31:14:0.643:2	./.	0/1:0,32:32:32:1.00:2	./.	./.	0/1:5,14:31:19:0.737:2	0/1:0,45:32:45:1.00:2	0/1:6,19:32:25:0.760:2	0/1:0,20:31:20:1.00:2	0/1:12,13:32:25:0.520:2
chr16	772141	rs11867009	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:11,15:31:26:0.577:2	0/1:9,12:32:21:0.571:2	./.	0/1:0,49:32:49:1.00:2	./.	./.	0/1:18,18:29:36:0.500:2	0/1:0,51:30:51:1.00:2	0/1:7,12:31:19:0.632:2	0/1:0,28:31:28:1.00:2	0/1:13,17:28:30:0.567:2
chr16	774692	rs2071950	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:24,14:27:38:0.368:2	0/1:17,12:28:29:0.414:2	./.	0/1:3,49:27:52:0.942:2	./.	./.	0/1:49,28:28:77:0.364:2	0/1:0,68:29:68:1.00:2	0/1:38,40:29:78:0.513:2	0/1:0,59:28:59:1.00:2	0/1:22,23:26:45:0.511:2
chr16	776239	rs62032517	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,36:32:36:1.00:2	./.	./.	./.	./.	./.	0/1:10,19:32:29:0.655:2	./.
chr16	778024	rs1406814	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:21,16:31:37:0.432:2	0/1:16,5:32:21:0.238:2	./.	./.	./.	./.	0/1:33,16:31:49:0.327:2	0/1:39,27:31:66:0.409:2	./.	0/1:29,17:32:46:0.370:2	./.
chr16	778820	rs12448432	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:16,11:33:27:0.407:2	0/1:9,7:32:16:0.438:2	./.	./.	./.	./.	0/1:59,43:31:102:0.422:2	0/1:45,42:32:87:0.483:2	./.	0/1:15,18:31:33:0.545:2	./.
chr16	781633	rs3829492	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,13:29:25:0.520:2	0/1:5,13:31:18:0.722:2	./.	0/1:6,7:33:13:0.538:2	./.
chr16	784765	rs9928077	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:42,47:31:89:0.528:2	0/1:23,28:31:51:0.549:2	./.	./.	./.	./.	0/1:56,80:30:136:0.588:2	0/1:97,96:31:193:0.497:2	./.	0/1:60,49:31:109:0.450:2	./.
chr16	813650	rs3765319	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,16:28:33:0.485:2	0/1:26,31:29:57:0.544:2
chr16	818559	rs1135210	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:31:11:0.545:2	./.	./.	./.	./.	./.	0/1:4,4:29:8:0.500:2	0/1:3,5:29:8:0.625:2
chr16	820603	rs143870933	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:30:6:0.500:2	./.	./.	./.	./.	./.
chr16	820622	rs74636066	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:29:5:0.600:2	./.	./.	./.	./.	./.	0/1:4,3:28:7:0.429:2	0/1:2,7:31:9:0.778:2
chr16	820888	rs12599339	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,26:32:83:0.313:2	./.	./.	./.	./.	./.	0/1:36,14:32:50:0.280:2	0/1:26,17:32:43:0.395:2
chr16	820944	rs12599363	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,16:27:50:0.320:2	./.	./.	./.	./.	./.	0/1:23,11:29:35:0.324:2	0/1:16,8:30:24:0.333:2
chr16	825003	rs142136229	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	./.	./.	./.	./.	./.	./.
chr16	830520	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,6:28:150:0.040:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	830540	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:32:178:0.022:2	./.
chr16	830698	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:31:170:0.024:2	./.
chr16	830799	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:31:73:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	830806	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,6:28:163:0.037:2	./.	./.	./.	./.
chr16	838711	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:30:104:0.038:2	./.	./.	./.	./.	./.
chr16	839084	rs2277901	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.
chr16	839262	rs569951	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:31:59:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,16:32:16:1.00:2	0/1:1,113:31:115:0.991:2	0/1:0,115:31:115:1.00:2	0/1:0,117:31:117:1.00:2	0/1:0,109:31:109:1.00:2	0/1:0,139:32:139:1.00:2	0/1:1,79:32:80:0.988:2	0/1:2,82:31:84:0.976:2	0/1:0,59:31:59:1.00:2
chr16	840378	rs3765263	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,21:30:43:0.488:2	./.	./.	./.	./.	./.	0/1:14,11:30:25:0.440:2	0/1:20,22:31:42:0.524:2
chr16	840409	rs3765264	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,35:32:68:0.515:2	./.	./.	./.	./.	./.	0/1:21,17:32:38:0.447:2	0/1:29,35:32:64:0.547:2
chr16	840569	rs150535361	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:16,9:32:25:0.360:2	0/1:8,6:31:14:0.429:2	./.	./.	0/1:19,15:31:34:0.441:2	./.	./.	./.	./.	./.	./.
chr16	840633	.	A	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:16:18:0.500:2	./.	./.	0/1:12,6:16:18:0.333:2	0/1:9,8:17:17:0.471:2	0/1:12,7:17:19:0.368:2	./.	./.
chr16	840636	rs17850060	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,7:31:13:0.538:2	./.
chr16	842450	rs2277897	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:32:18:0.500:2	./.	./.	./.	0/1:14,7:31:21:0.333:2	./.	0/1:5,11:31:16:0.688:2	0/1:4,4:33:8:0.500:2
chr16	845248	rs17850062	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,13:27:39:0.333:2	./.
chr16	846069	rs142211274	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,33:30:97:0.340:2	./.	./.	./.	./.	./.	./.
chr16	847743	rs2294451	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,28:32:58:0.491:2	./.	./.	./.	./.	./.	0/1:32,25:32:57:0.439:2	0/1:24,15:32:39:0.385:2
chr16	855676	rs78564080	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:23,27:29:50:0.540:2	0/1:8,5:28:13:0.385:2	./.	./.	0/1:50,30:28:80:0.375:2	./.	./.	0/1:36,27:29:63:0.429:2	./.	./.	./.
chr16	855717	rs1005190	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,16:33:36:0.444:2	0/1:8,5:32:13:0.385:2	./.	0/1:27,21:33:48:0.438:2	0/1:41,25:32:66:0.379:2	./.	0/1:55,4:35:59:0.068:2	0/1:24,17:32:41:0.415:2	./.	0/1:12,19:32:31:0.613:2	0/1:24,18:32:42:0.429:2
chr16	863336	rs11860086	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,5:32:10:0.500:2	./.	./.	./.	./.	./.
chr16	863369	rs199580467	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,4:33:14:0.286:2	./.	./.	./.
chr16	863372	rs200304320	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,4:32:14:0.286:2	./.	./.	./.
chr16	863498	rs13333991	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:38,23:31:61:0.377:2	0/1:20,15:31:35:0.429:2	./.	./.	0/1:83,88:32:173:0.515:2	./.	./.	./.	./.	./.	./.
chr16	920870	rs35168378	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:32:6:0.500:2
chr16	921179	rs143076454	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,13:32:37:0.351:2
chr16	929711	rs2076425	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,65:31:120:0.542:2	./.
chr16	942989	rs11864203	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:32:3:0.667:2	0/1:5,58:32:63:0.921:2	0/1:26,39:30:65:0.600:2	./.	./.	./.	./.	./.	./.
chr16	961051	rs2277893	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:24,14:32:38:0.368:2	0/1:11,15:32:26:0.577:2	./.	./.	0/1:13,8:30:21:0.381:2	./.	./.	./.	./.	./.	./.
chr16	961054	rs2277892	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:21,15:32:36:0.417:2	0/1:14,15:33:29:0.517:2	./.	./.	0/1:12,8:32:20:0.400:2	./.	./.	./.	./.	./.	./.
chr16	1004554	rs3751667	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:36,24:33:60:0.400:2	0/1:25,10:32:35:0.286:2	0/1:11,11:32:22:0.500:2	./.	0/1:47,45:31:92:0.489:2	./.	0/1:60,34:31:94:0.362:2	0/1:1,92:32:93:0.989:2	./.	0/1:34,26:32:60:0.433:2	./.
chr16	1004605	rs12448005	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,25:33:60:0.417:2	./.	./.	./.	./.	./.	./.	./.
chr16	1020874	rs111980103	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:24:5:1.00:2	./.	0/1:2,4:23:6:0.667:2	./.
chr16	1032267	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.
chr16	1034834	rs237674	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:28:24:1.00:2	0/1:0,24:29:24:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,58:29:58:1.00:2	0/1:0,68:30:68:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,54:28:54:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,29:29:29:1.00:2	0/1:0,39:29:39:1.00:2
chr16	1034954	rs11542178	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:28:3:1.00:2	./.	./.	./.
chr16	1129010	rs4988483	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,19:31:28:0.679:2	0/1:13,18:31:31:0.581:2	./.	./.	./.	./.	./.	0/1:7,10:31:17:0.588:2
chr16	1129501	rs34037914	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,18:30:44:0.409:2	./.	./.	./.
chr16	1129872	rs169068	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:32:10:1.00:2	0/1:1,6:32:7:0.857:2	./.	./.	0/1:12,17:31:29:0.586:2	./.	0/1:11,9:31:20:0.450:2	0/1:19,10:32:29:0.345:2	./.	0/1:0,13:33:13:1.00:2	0/1:13,7:32:20:0.350:2
chr16	1129912	rs642249	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,2:31:2:1.00:2	0/1:0,2:34:2:1.00:2	./.	0/1:0,2:34:2:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.
chr16	1130151	rs34510206	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:33:5:0.800:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	1130707	rs35024978	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	./.	./.
chr16	1131175	rs197055	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	0/1:12,11:30:23:0.478:2	./.	./.	./.
chr16	1131181	rs12599155	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,17:32:17:1.00:2	0/1:0,11:31:11:1.00:2	./.	./.	0/1:9,7:32:16:0.438:2	./.	./.	./.	./.	0/1:0,18:31:18:1.00:2	0/1:9,16:30:25:0.640:2
chr16	1131393	rs2076421	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,65:29:65:1.00:2	0/1:0,39:29:39:1.00:2	0/1:6,5:31:11:0.455:2	./.	0/1:51,21:29:72:0.292:2	./.	./.	./.	./.	0/1:0,51:29:51:1.00:2	0/1:48,42:30:90:0.467:2
chr16	1143500	rs113157415	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,8:32:12:0.667:2	./.	./.	./.	./.
chr16	1250389	rs36117280	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	./.	./.	./.	./.	./.
chr16	1250559	rs8044363	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,3:29:18:0.167:2	0/1:9,4:30:13:0.308:2	0/1:0,3:28:3:1.00:2	0/1:23,4:27:27:0.148:2	0/1:0,26:27:26:1.00:2	./.	./.	0/1:15,13:27:28:0.464:2	0/1:18,8:28:26:0.308:2	./.	./.
chr16	1251803	rs9922076	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:30:13:0.538:2	./.	0/1:89,103:32:193:0.536:2	./.	./.	0/1:82,94:32:176:0.534:2	0/1:54,67:33:121:0.554:2	./.	./.
chr16	1252118	rs2407083	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.	./.
chr16	1252259	rs9934839	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:33:10:0.400:2	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	0/1:4,5:32:9:0.556:2	0/1:7,3:29:10:0.300:2	0/1:2,2:33:4:0.500:2	./.
chr16	1252369	rs61734410	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:32:12:0.583:2	./.	0/1:2,4:32:6:0.667:2	0/1:8,7:30:15:0.467:2	0/1:8,11:30:19:0.579:2	0/1:2,4:34:6:0.667:2	./.	0/1:9,4:34:13:0.308:2
chr16	1252441	rs4984636	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:5,9:31:14:0.643:2	0/1:3,3:32:6:0.500:2	./.	0/1:9,7:33:16:0.438:2	./.	./.	./.	./.	./.	./.	./.
chr16	1254369	rs3751664	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,81:31:196:0.413:2	./.	./.	./.
chr16	1256149	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,4:30:19:0.211:2
chr16	1257098	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:33:62:0.065:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	1258033	rs41292285	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,47:31:101:0.470:2	./.	./.	./.	./.
chr16	1260481	rs8063574	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:32:64:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,12:32:12:1.00:2	0/1:1,115:32:116:0.991:2	0/1:57,54:32:111:0.486:2	0/1:69,69:32:139:0.500:2	0/1:62,39:32:101:0.386:2	0/1:0,108:32:108:1.00:2	0/1:0,74:33:74:1.00:2	0/1:0,82:31:82:1.00:2	0/1:1,101:31:102:0.990:2
chr16	1260636	rs28365124	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,8:32:12:0.667:2	0/1:9,8:32:17:0.471:2	./.	./.	0/1:0,4:33:4:1.00:2
chr16	1261219	rs2753326	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:27:46:1.00:2	0/1:1,33:28:34:0.971:2	0/1:5,6:29:11:0.545:2	0/1:0,100:27:100:1.00:2	./.	0/1:69,28:27:97:0.289:2	./.	0/1:77,46:27:123:0.374:2	0/1:60,52:27:112:0.464:2	0/1:0,84:27:84:1.00:2	./.
chr16	1261222	rs2753325	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:28:47:1.00:2	0/1:1,32:29:33:0.970:2	0/1:6,6:29:12:0.500:2	0/1:0,100:28:100:1.00:2	./.	0/1:72,28:26:100:0.280:2	./.	0/1:81,46:28:127:0.362:2	0/1:62,51:27:113:0.451:2	0/1:1,85:27:86:0.988:2	./.
chr16	1261282	rs4984637	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:32:68:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,148:33:148:1.00:2	0/1:92,78:32:171:0.459:2	0/1:96,52:33:148:0.351:2	0/1:93,73:33:166:0.440:2	0/1:1,145:32:146:0.993:2	0/1:1,142:33:143:0.993:2	0/1:0,101:32:101:1.00:2	0/1:2,111:33:113:0.982:2
chr16	1263845	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,6:25:72:0.083:2	./.	./.	0/1:66,7:18:73:0.096:2	./.	./.	./.	./.
chr16	1265600	rs2235634	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,18:30:40:0.450:2	./.	./.	./.	0/1:26,21:29:47:0.447:2	./.	0/1:11,13:31:24:0.542:2	./.
chr16	1267967	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,4:34:138:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr16	1268013	rs57135930	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,55:28:120:0.458:2	0/1:65,49:28:114:0.430:2	./.	./.	0/1:25,37:29:62:0.597:2
chr16	1268376	rs58124832	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,42:32:84:0.500:2	0/1:55,49:32:104:0.471:2	./.	./.	0/1:22,24:32:46:0.522:2
chr16	1268485	rs2738891	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:25:7:0.429:2	./.	./.
chr16	1268494	rs2745136	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,7:27:7:1.00:2	0/1:0,11:30:11:1.00:2	./.	0/1:0,9:32:9:1.00:2	./.	0/1:9,4:30:13:0.308:2	./.	0/1:6,8:30:14:0.571:2	0/1:2,4:33:6:0.667:2	0/1:0,3:31:3:1.00:2	./.
chr16	1268542	rs60526088	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,6:33:11:0.545:2
chr16	1268979	rs72552054	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,41:32:78:0.526:2	./.	./.
chr16	1269003	rs3751886	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,30:32:56:0.536:2
chr16	1269029	rs2738893	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:31:48:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,20:32:20:1.00:2	0/1:1,80:31:81:0.988:2	./.	0/1:43,51:31:94:0.543:2	./.	0/1:68,37:31:105:0.352:2	0/1:39,24:33:63:0.381:2	0/1:1,36:29:37:0.973:2	./.
chr16	1269095	rs72552056	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,8:30:13:0.615:2	0/1:11,16:32:27:0.593:2	./.	./.	0/1:7,6:33:13:0.462:2
chr16	1269114	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,10:28:18:0.556:2
chr16	1270055	rs3751889	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,12:27:30:0.400:2
chr16	1270111	rs1054644	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,4:23:8:0.500:2	./.	./.	./.	0/1:4,12:27:16:0.750:2	./.	./.
chr16	1270162	rs1054645	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,3:32:3:1.00:2	0/1:0,3:31:3:1.00:2	./.	0/1:0,5:30:5:1.00:2	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	0/1:1,3:27:4:0.750:2	./.
chr16	1270349	rs4247094	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	1271890	rs1004041	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:30:48:1.00:2	0/1:2,19:31:21:0.905:2	0/1:0,2:28:2:1.00:2	0/1:0,79:30:79:1.00:2	./.	0/1:49,34:29:83:0.410:2	./.	0/1:35,45:29:80:0.563:2	0/1:23,28:29:51:0.549:2	0/1:22,35:30:57:0.614:2	./.
chr16	1271938	rs72775455	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,35:30:92:0.380:2	0/1:72,37:29:109:0.339:2	./.	./.	0/1:39,36:29:75:0.480:2
chr16	1272038	rs11248860	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:30:37:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,69:30:69:1.00:2	0/1:29,24:30:53:0.453:2	0/1:58,25:30:83:0.301:2	./.	0/1:15,33:29:48:0.688:2	0/1:0,47:31:47:1.00:2	0/1:0,54:31:54:1.00:2	0/1:11,16:31:27:0.593:2
chr16	1272275	rs143120059	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,5:25:6:0.833:2
chr16	1272684	rs4984638	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,43:29:43:1.00:2	0/1:0,24:28:24:1.00:2	./.	0/1:53,21:28:74:0.284:2	./.	./.	./.	./.	./.	./.	./.
chr16	1272722	rs2294608	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,26:33:49:0.531:2
chr16	1272750	rs113856625	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,35:31:61:0.574:2	0/1:42,58:30:100:0.580:2	./.	./.	0/1:36,37:30:73:0.507:2
chr16	1272865	rs4984639	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,95:31:97:0.979:2	0/1:0,54:32:54:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,174:31:174:1.00:2	0/1:98,80:31:178:0.449:2	0/1:96,70:31:166:0.422:2	0/1:167,8:32:175:0.046:2	./.	0/1:0,128:32:128:1.00:2	0/1:0,140:31:141:1.00:2	./.
chr16	1273490	rs760357	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,5:33:5:1.00:2	0/1:0,4:31:4:1.00:2	./.	0/1:1,6:31:7:0.857:2	./.	./.	./.	./.	./.	./.	./.
chr16	1278744	rs62012862	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,53:30:70:0.757:2	0/1:10,37:29:47:0.787:2	./.	0/1:15,68:27:83:0.819:2	0/1:41,33:28:74:0.446:2	0/1:78,32:26:110:0.291:2	0/1:38,14:27:52:0.269:2	./.	0/1:56,25:30:81:0.309:2	0/1:38,36:29:74:0.486:2	0/1:19,43:29:62:0.694:2
chr16	1278767	rs201725275	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,51:29:65:0.785:2	0/1:7,42:30:49:0.857:2	./.	0/1:17,68:29:85:0.800:2	0/1:31,33:29:64:0.516:2	0/1:57,30:29:87:0.345:2	0/1:22,8:28:30:0.267:2	./.	0/1:26,18:30:44:0.409:2	0/1:25,33:30:58:0.569:2	0/1:12,44:30:56:0.786:2
chr16	1278806	rs199504258	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,27:32:38:0.711:2	0/1:4,24:32:28:0.857:2	./.	0/1:8,39:31:47:0.830:2	0/1:11,22:32:33:0.667:2	0/1:21,9:32:30:0.300:2	0/1:13,3:32:16:0.188:2	./.	0/1:13,8:33:21:0.381:2	0/1:11,15:32:26:0.577:2	0/1:7,18:32:25:0.720:2
chr16	1278916	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,9:33:87:0.103:2	0/1:85,4:33:89:0.045:2	./.	./.	0/1:55,4:34:59:0.068:2	0/1:38,15:32:53:0.283:2
chr16	1278919	rs200529241	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,9:32:95:0.095:2	0/1:102,4:33:106:0.038:2	./.	./.	0/1:60,4:33:64:0.063:2	0/1:43,15:32:58:0.259:2
chr16	1278950	rs201636233	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:114,66:30:180:0.367:2	0/1:36,44:31:80:0.550:2	./.	0/1:111,84:29:195:0.431:2	0/1:168,30:30:198:0.152:2	0/1:143,26:30:169:0.154:2	0/1:168,13:30:181:0.072:2	./.	0/1:155,17:31:172:0.099:2	0/1:132,29:31:161:0.180:2	0/1:83,49:31:132:0.371:2
chr16	1278963	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,44:30:179:0.247:2	./.
chr16	1278977	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,13:31:60:0.217:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	1279041	.	A	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:112,34:32:146:0.233:2	0/1:85,54:31:139:0.388:2	./.	0/1:118,63:32:181:0.348:2	0/1:160,19:31:179:0.106:2	0/1:141,34:32:175:0.194:2	0/1:178,21:33:199:0.106:2	./.	0/1:172,17:32:189:0.090:2	0/1:133,28:32:161:0.174:2	0/1:122,41:33:163:0.252:2
chr16	1279055	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,9:32:149:0.061:2
chr16	1279060	.	C	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:102,27:31:129:0.209:2	0/1:74,39:31:113:0.345:2	./.	0/1:116,52:32:169:0.310:2	0/1:153,21:31:174:0.121:2	0/1:128,32:31:160:0.200:2	0/1:162,19:32:181:0.105:2	./.	0/1:166,13:29:179:0.073:2	0/1:125,24:32:149:0.161:2	0/1:116,29:32:145:0.200:2
chr16	1279270	rs182531071	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:30:11:0.727:2	./.	./.	./.	./.	0/1:135,14:30:153:0.094:2	./.	0/1:37,14:29:52:0.275:2	./.
chr16	1279271	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:30:12:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	1279295	rs145662073	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,32:31:33:0.970:2	0/1:1,26:31:27:0.963:2	./.	0/1:3,69:31:72:0.958:2	0/1:139,44:31:184:0.240:2	0/1:149,30:32:180:0.168:2	./.	./.	0/1:58,26:32:84:0.310:2	0/1:64,23:30:87:0.264:2	0/1:25,23:29:48:0.479:2
chr16	1279306	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:136,53:29:189:0.280:2	./.	./.	./.	./.	./.	./.
chr16	1279358	rs376097626	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,5:33:111:0.045:2
chr16	1279382	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,10:32:187:0.053:2	0/1:178,8:32:186:0.043:2	./.	0/1:190,5:31:195:0.026:2	./.	0/1:114,5:33:119:0.042:2
chr16	1279438	rs202041848	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:56,9:31:65:0.138:2	0/1:33,8:31:41:0.195:2	./.	0/1:102,15:31:117:0.128:2	0/1:141,9:31:150:0.060:2	0/1:143,16:31:159:0.101:2	0/1:128,8:31:136:0.059:2	./.	0/1:99,12:31:111:0.108:2	0/1:113,7:29:121:0.058:2	0/1:43,17:30:60:0.283:2
chr16	1279574	rs199887053	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,9:33:9:1.00:2	0/1:1,2:33:3:0.667:2	./.	0/1:3,11:32:14:0.786:2	./.	0/1:17,9:33:26:0.346:2	0/1:11,6:33:17:0.353:2	./.	0/1:8,5:32:13:0.385:2	./.	0/1:0,7:34:7:1.00:2
chr16	1279584	rs111992451	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,10:31:10:1.00:2	0/1:1,5:31:6:0.833:2	./.	0/1:2,16:30:18:0.889:2	./.	0/1:18,10:29:28:0.357:2	0/1:14,8:31:22:0.364:2	./.	0/1:9,6:29:15:0.400:2	0/1:14,3:33:17:0.176:2	0/1:0,9:30:9:1.00:2
chr16	1279623	rs72633259	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,27:31:27:1.00:2	0/1:0,19:31:19:1.00:2	./.	0/1:1,45:30:46:0.978:2	0/1:17,14:32:31:0.452:2	./.	./.	./.	./.	0/1:18,11:31:29:0.379:2	./.
chr16	1279704	rs202107419	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,5:31:9:0.556:2	0/1:3,4:31:7:0.571:2	./.	0/1:7,10:31:17:0.588:2	0/1:14,5:30:19:0.263:2	0/1:20,4:29:24:0.167:2	0/1:4,5:34:9:0.556:2	./.	0/1:8,8:31:16:0.500:2	./.	0/1:3,7:31:10:0.700:2
chr16	1279710	rs200630968	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,5:30:9:0.556:2	./.	./.	0/1:6,7:28:14:0.538:2	0/1:12,3:31:15:0.200:2	./.	./.	./.	./.	./.	0/1:3,5:30:8:0.625:2
chr16	1290947	rs371929937	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,3:30:26:0.115:2	./.	./.	./.	./.	./.	./.
chr16	1290948	rs376632253	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,3:31:26:0.115:2	./.	./.	./.	./.	./.	./.
chr16	1291188	rs17434400	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,24:32:24:1.00:2	0/1:0,16:31:16:1.00:2	./.	0/1:0,41:30:41:1.00:2	0/1:8,17:31:25:0.680:2	0/1:29,17:29:46:0.370:2	0/1:7,9:31:16:0.563:2	./.	0/1:12,20:30:32:0.625:2	0/1:12,9:28:21:0.429:2	0/1:0,24:29:24:1.00:2
chr16	1291454	rs201351744	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:81,23:30:104:0.221:2	0/1:57,13:30:70:0.186:2	./.	0/1:116,24:30:141:0.171:2	0/1:184,12:31:196:0.061:2	0/1:134,15:30:149:0.101:2	0/1:174,12:30:186:0.065:2	./.	0/1:139,22:30:161:0.137:2	0/1:97,9:31:106:0.085:2	0/1:68,17:31:85:0.200:2
chr16	1291510	rs375711119	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,8:32:191:0.042:2	./.	./.	0/1:170,13:32:183:0.071:2	0/1:183,8:33:191:0.042:2	0/1:136,4:34:140:0.029:2
chr16	1291586	rs138390396	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:115,65:29:183:0.361:2	./.	./.	./.	./.	./.	./.
chr16	1291597	rs144979264	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,119:32:120:1.00:2	0/1:0,78:32:78:1.00:2	./.	0/1:2,151:31:153:0.987:2	0/1:110,58:31:168:0.345:2	0/1:105,72:32:177:0.407:2	./.	./.	0/1:127,51:32:178:0.287:2	0/1:126,38:31:164:0.232:2	0/1:43,51:30:94:0.543:2
chr16	1291621	rs372314315	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,7:31:39:0.179:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	1291622	rs149113013	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,16:32:40:0.400:2	./.	./.	./.	./.	0/1:125,36:30:162:0.224:2	./.	0/1:118,50:29:172:0.298:2	./.
chr16	1291623	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:149,4:31:153:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr16	1291639	rs201223167	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:114,10:30:124:0.081:2	0/1:76,4:28:80:0.050:2	./.	0/1:148,15:31:163:0.092:2	0/1:115,10:29:125:0.080:2	0/1:134,10:32:144:0.069:2	0/1:101,5:30:106:0.047:2	./.	0/1:175,6:35:181:0.033:2	0/1:163,9:33:172:0.052:2	0/1:88,12:32:100:0.120:2
chr16	1291681	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:33:108:0.037:2	./.	./.
chr16	1291831	rs202156919	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:107,67:32:174:0.385:2	0/1:66,42:30:108:0.389:2	./.	0/1:120,67:32:187:0.358:2	0/1:174,18:31:193:0.094:2	0/1:166,21:32:187:0.112:2	0/1:176,16:33:192:0.083:2	./.	0/1:157,24:31:181:0.133:2	0/1:156,29:30:185:0.157:2	0/1:124,41:30:165:0.248:2
chr16	1291836	rs201345428	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,20:32:165:0.121:2
chr16	1291850	rs200171211	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:116,66:32:182:0.363:2	0/1:86,58:31:144:0.403:2	./.	0/1:123,66:32:189:0.349:2	0/1:165,27:33:192:0.141:2	0/1:166,26:32:192:0.135:2	0/1:178,18:31:196:0.092:2	./.	0/1:155,29:32:184:0.158:2	0/1:150,41:32:191:0.215:2	0/1:118,49:32:168:0.293:2
chr16	1291914	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,13:31:50:0.260:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	1291928	rs199641141	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,40:32:158:0.253:2	./.
chr16	1291941	rs201280504	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:63,54:29:117:0.462:2	0/1:59,46:30:105:0.438:2	./.	0/1:79,75:29:154:0.487:2	0/1:114,36:29:150:0.240:2	0/1:133,15:30:148:0.101:2	0/1:126,13:31:139:0.094:2	./.	0/1:113,23:31:136:0.169:2	0/1:112,19:32:131:0.145:2	0/1:68,45:30:113:0.398:2
chr16	1291972	rs202246813	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,6:32:76:0.079:2	0/1:33,17:32:50:0.340:2
chr16	1291975	rs200303851	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,5:33:72:0.069:2	0/1:32,17:32:49:0.347:2
chr16	1292085	rs201539350	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,24:32:42:0.571:2	0/1:11,8:32:19:0.421:2	./.	0/1:8,30:32:38:0.789:2	0/1:19,10:32:29:0.345:2	0/1:33,10:32:43:0.233:2	./.	./.	0/1:21,5:32:26:0.192:2	0/1:13,6:32:19:0.316:2	0/1:9,17:32:26:0.654:2
chr16	1292124	rs144701102	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:54,33:30:87:0.379:2	0/1:29,11:31:40:0.275:2	./.	0/1:41,37:30:78:0.474:2	0/1:45,18:30:63:0.286:2	0/1:63,27:30:90:0.300:2	0/1:27,19:29:46:0.413:2	./.	0/1:51,21:31:72:0.292:2	0/1:51,25:30:76:0.329:2	0/1:24,35:30:59:0.593:2
chr16	1292147	rs145402040	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:77,24:28:101:0.238:2	0/1:47,9:27:56:0.161:2	./.	0/1:71,37:29:108:0.343:2	0/1:88,21:28:109:0.193:2	0/1:95,35:28:130:0.269:2	0/1:63,29:28:92:0.315:2	./.	0/1:84,36:30:120:0.300:2	0/1:65,23:29:88:0.261:2	0/1:41,37:30:78:0.474:2
chr16	1306346	rs3865205	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.	./.	0/1:2,6:32:8:0.750:2	./.	./.	./.
chr16	1306355	rs1800984	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,7:30:7:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,5:31:5:1.00:2	0/1:3,5:27:8:0.625:2	./.	./.	./.	0/1:3,6:29:9:0.667:2	./.	0/1:6,3:28:9:0.333:2	0/1:1,7:30:8:0.875:2
chr16	1306607	rs113256300	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,4:30:102:0.039:2	./.	./.	./.	./.	./.	./.
chr16	1306642	rs61739908	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,32:31:83:0.386:2	0/1:28,23:30:51:0.451:2	./.	0/1:29,23:32:52:0.442:2	0/1:19,35:31:54:0.648:2	0/1:28,19:32:47:0.404:2
chr16	1306671	rs1141966	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,40:33:40:1.00:2	0/1:0,34:32:34:1.00:2	./.	0/1:0,62:31:62:1.00:2	0/1:38,28:32:66:0.424:2	./.	./.	./.	./.	./.	0/1:19,25:32:44:0.568:2
chr16	1306680	rs1969653	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:31:7:1.00:2	./.	./.	./.	./.	0/1:21,21:32:42:0.500:2	./.	./.	./.
chr16	1306681	rs1141967	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,32:31:32:1.00:2	./.	0/1:0,55:31:56:1.00:2	0/1:37,23:30:60:0.383:2	./.	./.	./.	./.	./.	0/1:16,22:31:38:0.579:2
chr16	1306802	rs2401930	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:105,41:27:146:0.281:2	0/1:58,30:26:88:0.341:2	./.	0/1:120,72:27:192:0.375:2	0/1:150,48:25:198:0.242:2	0/1:156,39:26:196:0.200:2	0/1:130,52:26:182:0.286:2	./.	0/1:135,46:28:181:0.254:2	0/1:95,22:27:117:0.188:2	0/1:87,59:25:146:0.404:2
chr16	1306817	rs3993983	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:127,62:31:189:0.328:2	0/1:72,36:32:108:0.333:2	./.	0/1:121,70:31:191:0.366:2	0/1:154,40:30:195:0.206:2	0/1:156,35:30:191:0.183:2	0/1:142,52:30:194:0.268:2	./.	0/1:147,49:32:196:0.250:2	0/1:123,29:32:152:0.191:2	0/1:114,76:31:190:0.400:2
chr16	1306873	rs113333718	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,10:32:152:0.066:2	0/1:128,24:32:152:0.158:2	./.	0/1:134,23:33:157:0.146:2	0/1:149,19:33:168:0.113:2	0/1:120,20:32:140:0.143:2
chr16	1306897	rs143309290	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,7:32:108:0.065:2
chr16	1306918	rs74470113	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:95,39:32:134:0.291:2	0/1:91,37:32:128:0.289:2	./.	0/1:89,61:31:150:0.407:2	0/1:130,35:30:165:0.212:2	0/1:129,4:30:133:0.030:2	./.	./.	0/1:136,7:29:143:0.049:2	./.	0/1:86,7:28:93:0.075:2
chr16	1306921	rs78324915	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:94,39:32:133:0.293:2	0/1:87,36:31:123:0.293:2	./.	0/1:92,60:31:152:0.395:2	0/1:134,33:31:167:0.198:2	0/1:129,4:31:133:0.030:2	./.	./.	0/1:133,7:29:140:0.050:2	./.	0/1:89,7:31:96:0.073:2
chr16	1306927	rs79472859	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:91,35:28:126:0.278:2	0/1:90,28:31:119:0.237:2	./.	0/1:93,57:29:150:0.380:2	0/1:127,30:28:157:0.191:2	./.	./.	./.	0/1:134,6:27:140:0.043:2	./.	0/1:84,6:23:90:0.067:2
chr16	1306971	rs72775466	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:88,11:26:100:0.111:2	0/1:73,15:30:89:0.170:2	./.	0/1:93,15:27:108:0.139:2	0/1:108,12:29:121:0.100:2	0/1:100,11:32:111:0.099:2	0/1:91,5:32:97:0.052:2	./.	./.	0/1:117,10:28:127:0.079:2	0/1:82,18:29:100:0.180:2
chr16	1306973	rs79313952	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:92,11:30:103:0.107:2	0/1:71,15:30:87:0.174:2	./.	0/1:93,15:29:108:0.139:2	0/1:109,12:27:121:0.099:2	0/1:98,11:30:109:0.101:2	0/1:92,5:29:97:0.052:2	./.	./.	0/1:114,10:27:125:0.081:2	0/1:81,18:28:99:0.182:2
chr16	1306981	rs2272971	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,23:32:23:1.00:2	./.	./.	./.	./.	0/1:64,77:31:141:0.546:2	./.	0/1:74,44:33:118:0.373:2	./.
chr16	1306986	rs72775467	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:102,15:31:117:0.128:2	0/1:74,16:30:90:0.178:2	./.	0/1:95,17:30:112:0.152:2	0/1:112,14:29:126:0.111:2	0/1:90,11:26:101:0.109:2	0/1:83,7:26:90:0.078:2	./.	0/1:93,6:29:99:0.061:2	0/1:104,14:30:118:0.119:2	0/1:67,19:29:86:0.221:2
chr16	1307050	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:30:76:0.053:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	1307060	rs201543585	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,3:33:42:0.071:2	./.	./.	./.	./.	./.	./.	./.
chr16	1364365	rs4610	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,8:29:13:0.615:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	1370597	rs4017786	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,32:32:32:1.00:2	0/1:0,6:32:6:1.00:2	./.	0/1:0,17:32:17:1.00:2	0/1:0,22:31:22:1.00:2	0/1:20,13:32:33:0.394:2	0/1:0,12:29:12:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,12:30:12:1.00:2
chr16	1370614	rs8063770	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,27:32:27:1.00:2	0/1:0,9:32:9:1.00:2	./.	0/1:0,24:31:24:1.00:2	0/1:0,23:32:23:1.00:2	0/1:24,20:33:44:0.455:2	0/1:0,22:32:22:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,22:34:22:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,10:33:10:1.00:2
chr16	1370630	rs8043720	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,23:28:23:1.00:2	0/1:0,11:30:11:1.00:2	./.	0/1:0,35:29:35:1.00:2	0/1:0,26:29:26:1.00:2	0/1:25,22:30:47:0.468:2	0/1:0,25:29:25:1.00:2	0/1:0,30:28:30:1.00:2	0/1:0,19:28:19:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,9:28:9:1.00:2
chr16	1388544	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,11:12:63:0.175:2
chr16	1388618	rs11642118	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,42:31:84:0.500:2	./.	./.
chr16	1389153	rs7202563	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,15:30:15:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,4:30:4:1.00:2	0/1:1,17:29:18:0.944:2	0/1:0,27:30:27:1.00:2	0/1:13,6:30:19:0.316:2	0/1:0,7:29:7:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,9:31:10:1.00:2	0/1:0,11:28:11:1.00:2	0/1:0,15:31:15:1.00:2
chr16	1389222	rs61742684	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,7:29:9:0.778:2	./.	./.	./.
chr16	1391871	rs2369699	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,21:33:39:0.538:2	./.	./.	0/1:15,21:32:36:0.583:2	0/1:22,13:32:35:0.371:2	./.	0/1:5,5:33:10:0.500:2	0/1:8,9:32:17:0.529:2
chr16	1392716	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,22:31:40:0.550:2	./.	./.
chr16	1392923	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:28:38:0.105:2	./.
chr16	1393405	rs199910590	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,7:26:102:0.069:2	./.	./.	0/1:79,7:19:86:0.081:2	./.	./.	0/1:44,5:22:49:0.102:2
chr16	1394507	rs1132356	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:31:68:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,82:31:82:1.00:2	0/1:0,120:32:120:1.00:2	0/1:1,120:31:121:0.992:2	0/1:0,139:32:139:1.00:2	0/1:0,119:32:119:1.00:2	0/1:49,63:33:112:0.563:2	0/1:0,83:32:83:1.00:2	0/1:0,88:32:88:1.00:2
chr16	1394625	rs375942509	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,5:31:172:0.029:2	./.	./.	./.
chr16	1394694	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:33:137:0.029:2	./.	./.	./.	./.
chr16	1395806	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,18:28:25:0.720:2	./.	./.
chr16	1397815	rs1132358	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,7:31:7:1.00:2	./.	./.	0/1:0,4:32:4:1.00:2	0/1:0,4:31:4:1.00:2	./.	./.	./.	./.	./.	0/1:1,3:32:4:0.750:2
chr16	1397982	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,17:32:26:0.654:2	./.	./.	./.
chr16	1398099	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:32:5:0.800:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	1412092	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,5:29:36:0.139:2	./.	./.	./.	./.	./.
chr16	1417312	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,24:32:36:0.667:2	./.	./.	./.	./.	./.	./.
chr16	1417780	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,11:32:20:0.550:2	./.
chr16	1419947	rs11248874	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:31:22:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,38:32:38:1.00:2	0/1:20,13:34:33:0.394:2	0/1:0,18:30:18:1.00:2	0/1:0,21:31:21:1.00:2
chr16	1442911	rs61741579	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,54:30:89:0.607:2
chr16	1444185	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:31:148:0.027:2
chr16	1447278	rs61738727	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,9:31:9:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,4:32:4:1.00:2	0/1:11,6:32:17:0.353:2	0/1:0,7:27:7:1.00:2	0/1:8,10:29:18:0.556:2	0/1:0,7:33:7:1.00:2	0/1:0,16:30:16:1.00:2	0/1:7,5:32:12:0.417:2	0/1:0,4:32:4:1.00:2	0/1:0,12:29:12:1.00:2
chr16	1464636	rs111437424	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,5:29:5:1.00:2	0/1:0,6:28:6:1.00:2	./.	0/1:0,11:30:11:1.00:2	0/1:0,10:28:10:1.00:2	./.	0/1:0,10:28:10:1.00:2	0/1:0,11:29:11:1.00:2	0/1:7,4:30:11:0.364:2	0/1:0,4:29:4:1.00:2	0/1:0,3:29:3:1.00:2
chr16	1469964	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:32:56:0.071:2	./.
chr16	1479250	rs11646599	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,23:31:23:1.00:2	0/1:0,9:33:9:1.00:2	./.	./.	0/1:14,22:31:36:0.611:2	0/1:17,21:32:38:0.553:2	./.	0/1:1,32:31:33:0.970:2	0/1:8,15:32:23:0.652:2	./.	0/1:4,17:32:21:0.810:2
chr16	1484455	rs61743495	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,26:30:57:0.456:2	./.	./.
chr16	1484473	rs7192331	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:30:31:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,74:30:74:1.00:2	0/1:1,72:31:73:0.986:2	0/1:0,64:31:64:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,59:30:59:1.00:2
chr16	1484528	rs61744665	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,12:30:22:0.545:2	./.	./.	./.	./.	./.	./.	./.
chr16	1484791	rs7192233	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,21:31:38:0.553:2	./.	./.	./.	./.	./.	./.	./.
chr16	1486462	rs35583599	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,16:31:30:0.533:2	./.	./.	0/1:23,26:31:49:0.531:2	./.	./.
chr16	1488141	rs12925639	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:32:15:0.533:2	0/1:6,12:32:18:0.667:2	./.	./.	./.	0/1:18,15:30:33:0.455:2	./.	./.	0/1:21,9:31:30:0.300:2	./.	./.
chr16	1488646	rs8054054	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,19:30:48:0.396:2	0/1:20,14:28:34:0.412:2	./.	0/1:56,33:30:89:0.371:2	0/1:0,84:30:85:1.00:2	0/1:0,90:30:90:1.00:2	./.	0/1:84,45:29:129:0.349:2	0/1:0,57:31:57:1.00:2	./.	0/1:32,24:30:56:0.429:2
chr16	1492413	rs71380262	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,42:32:108:0.389:2	./.	./.	./.	./.	./.
chr16	1493909	rs34470360	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,23:31:54:0.426:2	./.	./.	./.	./.	./.
chr16	1494352	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,6:31:15:0.400:2	./.	./.	./.	./.
chr16	1497640	rs35021217	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,3:32:13:0.231:2	0/1:9,12:33:21:0.571:2	./.	./.	./.	./.	./.
chr16	1498775	rs35915213	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,29:30:43:0.674:2	0/1:21,16:30:37:0.432:2	./.	./.	./.	./.	./.
chr16	1500501	rs117461525	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,3:31:9:0.333:2	0/1:4,8:32:12:0.667:2	./.	./.	./.	./.	./.
chr16	1502857	rs12926089	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,17:31:45:0.378:2	0/1:41,34:30:76:0.453:2	./.	./.	./.	./.	./.
chr16	1502864	rs12926669	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,18:30:47:0.383:2	0/1:42,34:28:76:0.447:2	./.	./.	./.	./.	./.
chr16	1503879	rs2235579	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:50,32:32:82:0.390:2	0/1:19,22:31:41:0.537:2	0/1:1,24:32:25:0.960:2	./.	0/1:51,52:32:103:0.505:2	0/1:76,56:31:132:0.424:2	0/1:0,107:32:107:1.00:2	0/1:53,69:32:122:0.566:2	0/1:68,54:33:122:0.443:2	0/1:50,52:33:102:0.510:2	0/1:58,43:32:101:0.426:2
chr16	1504437	rs12935737	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,67:32:128:0.523:2	0/1:51,50:32:101:0.495:2	./.	./.	./.	./.	./.
chr16	1506130	rs41286695	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,13:28:21:0.619:2	./.	./.	./.	./.
chr16	1509123	rs12923538	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,87:31:173:0.503:2	0/1:99,63:32:162:0.389:2	0/1:71,77:32:148:0.520:2	./.	./.	./.	./.
chr16	1536323	rs2667671	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,10:32:18:0.556:2	0/1:5,14:33:19:0.737:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	1536372	rs28444604	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,19:32:37:0.514:2	./.	./.	./.	./.
chr16	1536380	rs2667672	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,21:31:42:0.500:2	0/1:9,13:32:22:0.591:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	1536443	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,10:17:48:0.208:2	./.	./.	0/1:23,12:16:35:0.343:2	./.	./.
chr16	1536499	rs2745097	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:30,33:30:63:0.524:2	0/1:34,13:32:47:0.277:2	0/1:10,7:30:17:0.412:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	1536535	rs2745098	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:34,39:31:73:0.534:2	0/1:29,15:32:44:0.341:2	0/1:14,5:31:19:0.263:2	./.	0/1:74,80:31:154:0.519:2	./.	0/1:67,45:31:112:0.402:2	./.	./.	./.	./.
chr16	1537414	rs56294663	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,27:29:35:0.771:2	0/1:17,7:28:24:0.292:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	1537451	rs28473314	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,8:34:22:0.364:2	./.	./.	./.	./.
chr16	1537455	rs2667673	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:12,17:28:29:0.586:2	0/1:19,6:28:25:0.240:2	./.	./.	0/1:12,7:30:19:0.368:2	./.	0/1:12,7:27:20:0.368:2	./.	./.	./.	./.
chr16	1537693	rs61734779	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,7:29:23:0.304:2	0/1:8,8:28:16:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	1537839	rs2745101	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:34:8:0.375:2	./.	0/1:23,23:31:46:0.500:2	./.	0/1:23,24:31:47:0.511:2	./.	./.	./.	./.
chr16	1537926	rs150305846	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,30:31:74:0.405:2	./.	./.	./.
chr16	1538363	rs1040499	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:51,43:30:94:0.457:2	0/1:28,34:32:62:0.548:2	0/1:9,7:28:16:0.438:2	./.	0/1:63,79:30:142:0.556:2	./.	0/1:24,73:31:97:0.753:2	./.	./.	./.	./.
chr16	1538433	rs2745102	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:32:8:0.500:2	./.	0/1:76,51:32:127:0.402:2	./.	0/1:54,48:33:102:0.471:2	./.	./.	./.	./.
chr16	1538464	rs2745103	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,44:31:114:0.386:2	./.	0/1:57,49:32:106:0.462:2	./.	./.	./.	./.
chr16	1544301	rs2667660	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,34:30:76:0.447:2	./.	0/1:31,30:30:62:0.492:2	./.	./.	./.	./.
chr16	1544302	rs2667661	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,34:29:76:0.447:2	./.	0/1:32,30:28:62:0.484:2	./.	./.	./.	./.
chr16	1545448	rs2235624	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:30:5:1.00:2	0/1:0,7:24:7:1.00:2	0/1:0,9:27:9:1.00:2	./.	./.	./.	0/1:0,3:29:3:1.00:2	0/1:4,3:25:7:0.429:2
chr16	1555589	rs2248128	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,13:28:28:0.464:2	0/1:22,11:31:33:0.333:2	./.	0/1:20,5:29:25:0.200:2	./.	./.	./.	./.
chr16	1559838	rs3180228	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,17:29:30:0.567:2	0/1:22,29:30:51:0.569:2	0/1:18,9:29:27:0.333:2	./.	0/1:35,10:26:45:0.222:2	./.	./.	0/1:10,6:27:16:0.375:2
chr16	1569978	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,4:33:49:0.082:2	./.	./.	./.	./.	./.	./.
chr16	1574650	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:20,8:14:29:0.286:2	./.	./.	./.	0/1:51,8:17:60:0.136:2	./.	./.	./.	./.	./.	./.
chr16	1574863	rs2235640	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,29:32:42:0.690:2	0/1:16,16:32:32:0.500:2	0/1:13,12:32:25:0.480:2	0/1:14,12:33:26:0.462:2	0/1:22,20:33:42:0.476:2	./.	./.	0/1:13,8:33:21:0.381:2
chr16	1584446	rs1057612	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,5:29:8:0.625:2	./.	./.	./.	./.
chr16	1591962	rs2076443	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,7:30:16:0.438:2	0/1:12,13:32:25:0.520:2	0/1:13,7:31:20:0.350:2	0/1:2,19:31:21:0.905:2	0/1:9,24:30:33:0.727:2	./.	./.	0/1:5,9:33:14:0.643:2
chr16	1608082	rs2076436	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,43:33:111:0.387:2	0/1:0,95:32:95:1.00:2	0/1:56,31:32:87:0.356:2	0/1:52,56:31:108:0.519:2	0/1:67,57:32:124:0.460:2	./.	./.	0/1:51,46:32:97:0.474:2
chr16	1614097	rs8048410	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,74:29:139:0.532:2	0/1:1,53:28:54:0.981:2	0/1:49,42:29:91:0.462:2	0/1:0,112:29:112:1.00:2	0/1:49,52:28:101:0.515:2	./.	./.	0/1:56,55:27:112:0.495:2
chr16	1634385	rs34762152	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,14:31:45:0.311:2	./.	./.	./.	./.
chr16	1637987	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,18:31:51:0.353:2
chr16	1638000	rs4786350	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,11:32:46:0.239:2	./.
chr16	1664931	rs11539468	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,7:29:7:1.00:2	./.	./.	./.	./.	./.	./.
chr16	1682281	rs3169425	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,39:30:75:0.520:2	0/1:2,81:29:83:0.976:2	./.	0/1:0,85:29:85:1.00:2	./.	./.	./.	0/1:55,43:30:98:0.439:2
chr16	1706435	rs61739874	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,14:31:27:0.519:2	./.	./.	0/1:10,18:32:28:0.643:2	./.	0/1:16,5:31:21:0.238:2
chr16	1718110	rs61746451	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,21:30:47:0.447:2
chr16	1719111	rs368018619	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,24:30:71:0.338:2	./.	./.	./.
chr16	1756349	rs139282045	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,17:31:26:0.654:2	./.	./.	./.	./.	./.	./.	./.
chr16	1797050	rs2294613	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:17,18:32:35:0.514:2	0/1:4,9:33:13:0.692:2	./.	./.	./.	./.	0/1:25,31:31:56:0.554:2	./.	./.	./.	./.
chr16	1812947	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:32:56:0.071:2
chr16	1812972	rs2294616	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,66:29:69:0.957:2	0/1:0,81:30:81:1.00:2	./.	0/1:42,32:29:74:0.432:2	./.	./.	./.	./.
chr16	1814391	rs2294618	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,25:31:25:1.00:2	0/1:0,8:30:8:1.00:2	./.	./.	./.	./.	./.	./.
chr16	1814440	rs2294619	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,11:26:45:0.244:2	./.	0/1:26,17:26:43:0.395:2	0/1:34,10:28:44:0.227:2	0/1:19,14:27:33:0.424:2	./.
chr16	1818138	rs2143284	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,9:32:23:0.391:2	0/1:3,14:32:17:0.824:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	1818503	rs2076431	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:1,4:33:5:0.800:2	./.	./.	./.	0/1:0,10:31:10:1.00:2	0/1:1,3:32:4:0.750:2	0/1:0,5:32:5:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,6:31:6:1.00:2
chr16	1820992	rs11890	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	./.	0/1:0,3:29:3:1.00:2	./.	./.	0/1:0,3:31:3:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,2:31:2:1.00:2
chr16	1823024	rs11552431	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,6:29:6:1.00:2	./.	0/1:2,4:28:6:0.667:2	./.	./.	./.	./.
chr16	1823054	rs11552432	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.
chr16	1823444	rs761065	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:35:2:1.00:2	./.	./.
chr16	1825093	rs370196251	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,14:33:30:0.467:2	0/1:6,9:33:15:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	1825855	rs200300991	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:18:12:0.500:2	./.	./.	./.	0/1:7,5:19:12:0.417:2	./.	./.	./.
chr16	1825982	rs61753375	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,14:31:22:0.636:2	./.
chr16	1826148	rs61753376	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,11:29:20:0.550:2	./.
chr16	1827836	rs1178432	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:27:44:1.00:2	0/1:0,28:27:28:1.00:2	0/1:0,16:29:16:1.00:2	0/1:2,69:27:71:0.972:2	0/1:0,86:27:86:1.00:2	0/1:44,45:28:89:0.506:2	0/1:0,73:28:73:1.00:2	0/1:70,31:26:101:0.307:2	0/1:48,50:29:98:0.510:2	0/1:1,69:28:70:0.986:2	0/1:0,36:27:36:1.00:2
chr16	1836796	rs2235648	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:2,3:30:5:0.600:2	0/1:6,4:31:10:0.400:2	0/1:3,3:30:6:0.500:2	./.	./.	0/1:18,13:28:31:0.419:2	0/1:8,14:28:22:0.636:2	0/1:10,14:28:24:0.583:2	0/1:11,5:30:17:0.313:2	0/1:1,7:27:8:0.875:2	0/1:7,7:29:15:0.500:2
chr16	1837734	rs139301301	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:31:57:0.070:2	./.
chr16	1837991	rs111886912	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,28:30:70:0.400:2	./.	./.	./.	./.
chr16	1838037	rs2272977	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,35:30:35:1.00:2	0/1:0,75:28:75:1.00:2	./.	0/1:33,28:28:61:0.459:2	./.	./.	./.	./.
chr16	1838640	rs344359	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,23:31:23:1.00:2	0/1:0,8:31:8:1.00:2	./.	0/1:0,24:30:24:1.00:2	0/1:0,39:29:39:1.00:2	0/1:12,11:28:23:0.478:2	0/1:0,19:30:19:1.00:2	0/1:20,18:29:38:0.474:2	0/1:18,12:31:30:0.400:2	0/1:21,7:31:28:0.250:2	0/1:0,17:30:18:1.00:2
chr16	1838703	rs11540961	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,23:30:38:0.605:2	./.	./.	./.
chr16	1840711	rs143070371	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,67:31:121:0.554:2	./.	./.	./.
chr16	1841705	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,4:31:31:0.129:2	./.	./.	./.	./.	./.
chr16	1842209	rs3751893	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,9:30:9:1.00:2	./.	./.	0/1:0,2:32:2:1.00:2	./.	0/1:10,5:31:15:0.333:2	./.	0/1:2,5:31:7:0.714:2	0/1:2,3:32:5:0.600:2	./.	0/1:0,3:31:3:1.00:2
chr16	1843672	rs3817902	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,9:26:9:1.00:2	0/1:0,4:24:4:1.00:2	0/1:0,2:28:2:1.00:2	./.	./.	0/1:9,6:25:15:0.400:2	./.	0/1:5,11:28:16:0.688:2	0/1:1,4:27:5:0.800:2	0/1:9,4:26:13:0.308:2	0/1:0,7:26:7:1.00:2
chr16	1867268	rs139868307	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,40:29:101:0.396:2	./.	./.	./.
chr16	1869987	rs114352351	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,36:29:91:0.396:2	./.	./.	./.
chr16	1877494	rs3743854	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,13:30:44:0.295:2	./.	./.	0/1:33,11:30:44:0.250:2	./.	0/1:9,10:30:19:0.526:2	./.
chr16	1877558	rs3743853	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,76:30:185:0.411:2	./.	./.	0/1:92,48:31:140:0.343:2	./.	0/1:43,25:30:68:0.368:2	./.
chr16	1877698	rs3743852	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,76:32:76:1.00:2	0/1:37,39:32:76:0.513:2	./.	0/1:40,36:32:76:0.474:2	./.	./.	./.	./.
chr16	1877913	rs13166	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,36:32:36:1.00:2	0/1:23,17:32:40:0.425:2	./.	0/1:12,12:32:24:0.500:2	./.	./.	./.	./.
chr16	1878295	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,14:15:23:0.609:2	0/1:10,6:15:16:0.375:2	./.	./.	0/1:14,5:20:19:0.263:2	0/1:12,10:20:22:0.455:2	0/1:24,7:20:31:0.226:2
chr16	1878305	.	A	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,9:15:28:0.321:2	0/1:17,12:11:29:0.414:2	./.	./.	./.	./.	0/1:30,8:14:38:0.211:2	0/1:37,8:17:45:0.178:2
chr16	1878330	rs79140651	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,13:30:51:0.255:2	0/1:25,9:29:34:0.265:2	./.	0/1:30,11:29:41:0.268:2	./.	./.	./.	./.
chr16	1878379	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:32:89:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	1878492	rs1065583	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,11:30:30:0.367:2	./.	./.	0/1:16,13:31:29:0.448:2	./.	0/1:19,11:32:30:0.367:2	./.
chr16	1878521	rs1065584	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,11:31:45:0.244:2	./.	./.	0/1:15,16:32:31:0.516:2	./.	0/1:17,12:32:29:0.414:2	./.
chr16	1878597	rs1065585	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,14:32:55:0.255:2	./.	./.	0/1:36,30:32:66:0.455:2	./.	0/1:32,21:32:53:0.396:2	./.
chr16	1878641	rs1065586	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,8:33:45:0.178:2	./.	./.	0/1:51,23:33:74:0.311:2	./.	0/1:32,20:33:52:0.385:2	./.
chr16	1878740	rs1065587	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,16:32:36:0.444:2	./.	./.	0/1:36,17:31:53:0.321:2	./.	0/1:22,11:31:33:0.333:2	./.
chr16	1878801	rs1065589	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,13:30:46:0.283:2	./.	./.	0/1:50,23:32:73:0.315:2	./.	0/1:39,14:29:53:0.264:2	./.
chr16	1878852	rs1065590	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,26:31:81:0.321:2	./.	./.	0/1:73,47:32:120:0.392:2	./.	0/1:46,32:31:78:0.410:2	./.
chr16	1878862	rs34277837	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,24:33:66:0.364:2	./.	./.	./.	./.
chr16	1894912	rs9806826	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,69:32:71:0.972:2	0/1:1,60:32:61:0.984:2	./.	0/1:54,29:32:83:0.349:2	0/1:102,38:32:141:0.271:2	./.	0/1:69,37:32:106:0.349:2	./.
chr16	1894961	rs9806945	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,21:31:43:0.488:2	./.	./.	0/1:76,21:31:97:0.216:2	./.	0/1:50,26:32:76:0.342:2	./.
chr16	1912021	rs1657125	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,66:30:66:1.00:2	0/1:11,30:30:41:0.732:2	./.	0/1:25,25:29:50:0.500:2	./.	./.	./.	./.
chr16	1918094	rs78268797	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,192:32:197:0.975:2	0/1:115,84:32:199:0.422:2	./.	0/1:99,57:33:156:0.365:2	./.	./.	./.	./.
chr16	1918125	rs1742446	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,174:32:174:1.00:2	0/1:0,115:32:116:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,172:32:172:1.00:2	0/1:101,79:32:180:0.439:2	0/1:0,172:32:174:1.00:2	0/1:0,136:32:136:1.00:2	0/1:93,70:32:163:0.429:2	0/1:2,174:33:176:0.989:2	0/1:74,108:32:182:0.593:2	0/1:0,148:33:148:1.00:2
chr16	1961674	rs337285	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:2,3:27:5:0.600:2	./.	0/1:0,4:29:4:1.00:2	./.	./.	0/1:0,2:31:2:1.00:2	0/1:0,2:33:2:1.00:2	./.	./.	./.
chr16	1961866	rs61742747	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:29:11:0.545:2	./.	./.	./.	./.	0/1:19,27:30:46:0.587:2	./.	./.	0/1:9,11:30:20:0.550:2
chr16	1962046	rs1742399	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,12:28:21:0.571:2	0/1:7,5:27:12:0.417:2	./.	0/1:0,35:28:36:1.00:2	0/1:0,33:28:33:1.00:2	./.	0/1:0,29:29:29:1.00:2	./.	./.	0/1:3,13:29:16:0.813:2	./.
chr16	1962047	rs1657140	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,13:28:23:0.565:2	0/1:6,6:28:12:0.500:2	./.	0/1:0,37:27:37:1.00:2	0/1:0,33:28:33:1.00:2	./.	0/1:0,30:29:30:1.00:2	./.	./.	0/1:3,13:28:16:0.813:2	./.
chr16	1962132	rs8055325	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,12:26:30:0.414:2	0/1:7,6:30:13:0.462:2	./.	0/1:6,47:29:53:0.887:2	0/1:2,52:27:54:0.963:2	./.	0/1:1,39:26:40:0.975:2	./.	./.	0/1:19,20:29:39:0.513:2	./.
chr16	1990994	rs13331553	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:53,52:33:106:0.495:2	0/1:20,29:31:49:0.592:2	./.	./.	0/1:80,55:32:135:0.407:2	./.	0/1:95,80:32:175:0.457:2	./.	./.	./.	./.
chr16	1996629	rs74930354	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,23:30:65:0.354:2	./.	./.	0/1:22,16:31:38:0.421:2
chr16	1997004	rs113956264	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,15:32:21:0.714:2	0/1:1,5:32:6:0.833:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	1997077	rs35067006	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,26:31:48:0.542:2	./.
chr16	2012615	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,33:30:58:0.569:2
chr16	2014283	rs2286466	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:32:37:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,42:32:42:1.00:2	0/1:26,25:32:51:0.490:2	0/1:0,45:32:45:1.00:2	0/1:34,39:32:73:0.534:2	0/1:21,23:33:44:0.523:2	0/1:0,45:32:45:1.00:2	0/1:38,17:32:55:0.309:2
chr16	2017772	rs62617081	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,25:31:43:0.581:2	./.	./.	./.	./.
chr16	2018554	rs114840677	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,25:30:47:0.532:2	./.	./.	./.	./.
chr16	2018557	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,49:30:81:0.605:2	./.	./.	./.	./.	./.	./.
chr16	2018578	rs45488492	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,6:33:14:0.429:2	./.	./.	./.	./.
chr16	2018912	rs62617079	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,20:30:43:0.465:2	./.	./.	./.	./.
chr16	2024131	rs3743851	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,12:28:22:0.545:2	0/1:7,6:29:13:0.462:2	0/1:10,5:30:15:0.333:2	0/1:17,16:28:33:0.485:2	./.	0/1:6,14:29:20:0.700:2	./.
chr16	2024355	rs3743850	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,10:32:15:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	2025206	rs8053843	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,6:33:24:0.250:2	./.	./.	0/1:64,80:32:144:0.556:2	./.	0/1:76,84:32:160:0.525:2	./.	0/1:46,65:32:111:0.586:2	0/1:52,44:32:96:0.458:2
chr16	2025411	rs12925447	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,52:32:106:0.491:2	./.	0/1:63,58:32:121:0.479:2	./.	0/1:43,37:32:80:0.463:2	./.
chr16	2026292	rs17604	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,106:29:167:0.635:2	./.	0/1:94,75:29:169:0.444:2	./.	0/1:57,61:29:119:0.517:2	./.
chr16	2026891	rs17605	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,20:32:62:0.323:2	./.	0/1:44,31:33:75:0.413:2	./.	0/1:26,27:33:53:0.509:2	./.
chr16	2028402	rs8460	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:27:10:0.300:2	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.
chr16	2028677	rs34968293	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,8:31:30:0.267:2	./.	0/1:23,29:29:52:0.558:2	./.	0/1:17,10:31:27:0.370:2	./.
chr16	2035868	rs1046502	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,27:30:28:0.964:2	./.	0/1:1,29:29:30:0.967:2	./.	./.	0/1:13,8:30:21:0.381:2	./.
chr16	2035907	rs36041021	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,12:33:33:0.364:2	./.	0/1:23,24:32:47:0.511:2	./.	0/1:19,21:33:40:0.525:2	./.
chr16	2035999	rs1802834	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,33:30:69:0.478:2	./.	0/1:43,38:32:81:0.469:2	./.	0/1:36,22:31:59:0.379:2	./.
chr16	2048796	rs1058474	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:32:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	2048826	rs2240691	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,50:32:53:0.943:2	./.	0/1:2,42:32:44:0.955:2	./.	./.	0/1:1,48:32:49:0.980:2	./.
chr16	2049003	rs2286468	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,14:31:14:1.00:2	./.	0/1:0,13:29:13:1.00:2	./.	./.	0/1:6,7:31:13:0.538:2	./.
chr16	2049640	rs2286469	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,4:29:10:0.400:2	0/1:3,4:30:7:0.571:2	./.	0/1:7,4:25:13:0.364:2	0/1:0,14:30:14:1.00:2	0/1:8,3:29:11:0.273:2	0/1:0,10:27:10:1.00:2	./.	0/1:5,10:30:15:0.667:2	0/1:0,11:30:11:1.00:2	./.
chr16	2050192	rs11556528	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:20:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	2051096	rs184444814	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:27:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	2052340	rs61746612	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,6:32:20:0.316:2	./.
chr16	2052665	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:31:147:0.027:2	./.
chr16	2070164	rs2286471	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,8:31:8:1.00:2	./.	0/1:0,2:30:2:1.00:2	./.	./.	0/1:0,3:31:3:1.00:2	./.
chr16	2070568	rs2286472	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,14:28:23:0.609:2	0/1:4,13:31:17:0.765:2	./.	0/1:31,30:32:62:0.492:2	0/1:0,22:31:22:1.00:2	./.	0/1:40,12:31:52:0.231:2	./.	0/1:28,8:31:36:0.222:2	0/1:0,37:30:37:1.00:2	./.
chr16	2087562	rs1132368	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,67:30:169:0.396:2	0/1:109,77:31:186:0.414:2	./.	./.	./.	./.
chr16	2096239	rs150766139	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,55:31:81:0.679:2	0/1:20,34:32:54:0.630:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	2098222	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,6:19:37:0.162:2	./.	./.	./.	./.	./.	./.	./.
chr16	2098645	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:32:152:0.026:2	./.	./.
chr16	2103372	rs45517098	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,45:31:93:0.484:2	./.	./.
chr16	2114407	rs34012042	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,47:31:84:0.560:2	./.	./.
chr16	2125834	rs13337626	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,21:31:45:0.467:2	./.	./.
chr16	2132422	rs45480591	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,27:33:51:0.529:2	./.
chr16	2136842	rs45517384	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:33:10:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:30,29:33:59:0.492:2
chr16	2138086	rs45483700	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,29:31:52:0.558:2	./.	./.
chr16	2138269	rs1748	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,15:31:39:0.395:2	0/1:13,4:31:17:0.235:2	./.	./.	./.	./.	./.	./.	0/1:31,21:34:52:0.404:2	0/1:19,15:30:34:0.441:2	./.
chr16	2140010	rs7203729	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,13:31:25:0.520:2	0/1:20,8:30:28:0.286:2	./.	./.	./.	./.	./.	./.	0/1:26,17:31:43:0.395:2	0/1:13,17:32:30:0.567:2	./.
chr16	2140321	rs79899502	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,32:31:75:0.427:2	./.	./.
chr16	2140454	rs3087632	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,6:29:15:0.400:2	0/1:3,4:32:7:0.571:2	./.	./.	./.	./.	./.	./.	0/1:17,3:30:20:0.150:2	0/1:8,4:28:12:0.333:2	./.
chr16	2140554	rs3209986	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:32:6:0.500:2	./.	./.
chr16	2140680	rs10960	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,17:31:31:0.548:2	0/1:8,4:30:12:0.333:2	./.	./.	./.	./.	./.	./.	0/1:11,3:31:14:0.214:2	0/1:17,15:31:32:0.469:2	./.
chr16	2144176	rs34197769	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,51:31:98:0.520:2	./.	./.
chr16	2149965	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:179,7:30:186:0.038:2	0/1:187,7:34:194:0.036:2	./.	./.	0/1:188,4:33:192:0.021:2	0/1:183,4:34:188:0.021:2	./.	./.
chr16	2150518	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,5:26:12:0.455:2
chr16	2152171	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,6:33:75:0.080:2	./.
chr16	2152189	rs149056734	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,64:30:190:0.337:2	./.	./.	./.	./.	./.
chr16	2152387	rs77028972	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,21:32:48:0.438:2	0/1:28,14:32:42:0.333:2	./.	./.	./.	./.	./.	./.	0/1:16,25:33:41:0.610:2	0/1:37,19:33:56:0.339:2	./.
chr16	2152388	rs9935834	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,21:32:48:0.438:2	0/1:28,14:32:42:0.333:2	./.	./.	./.	./.	./.	./.	0/1:16,25:34:41:0.610:2	0/1:37,19:33:56:0.339:2	./.
chr16	2153618	rs149151043	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,16:31:33:0.485:2
chr16	2153765	rs144979397	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,30:31:57:0.526:2	./.	./.	./.	./.
chr16	2154537	rs147350387	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,40:31:91:0.440:2	./.	./.	./.	./.	./.	./.	./.
chr16	2158022	rs189277711	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,9:29:13:0.692:2	./.	./.	./.	./.	./.	./.	./.
chr16	2159095	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	2159996	rs9935526	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,25:32:37:0.676:2	0/1:19,7:32:26:0.269:2	./.	./.	./.	./.	./.	./.	0/1:15,29:32:44:0.659:2	0/1:20,20:32:40:0.500:2	./.
chr16	2160251	rs148852027	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,13:26:41:0.317:2
chr16	2160503	rs71385734	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,6:32:18:0.333:2	0/1:13,3:33:16:0.188:2	./.	./.	./.	./.	./.	./.	0/1:10,17:32:27:0.630:2	0/1:29,9:33:38:0.237:2	./.
chr16	2160973	rs116092985	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,10:29:36:0.278:2	0/1:16,9:27:25:0.360:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	2161153	rs147141131	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,3:32:26:0.115:2
chr16	2161793	rs74331768	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:1,14:32:15:0.933:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,4:33:9:0.444:2	./.
chr16	2161796	rs75510884	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:1,14:31:15:0.933:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.
chr16	2162839	rs2099534	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,12:32:25:0.480:2	0/1:4,5:33:9:0.556:2	./.	0/1:11,8:33:19:0.421:2
chr16	2162887	rs2369068	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:11,12:31:23:0.522:2	0/1:8,4:31:12:0.333:2	./.	./.	./.	./.	./.	./.	./.	0/1:18,14:32:32:0.438:2	./.
chr16	2164211	rs148709380	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.
chr16	2164294	rs35965348	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,38:32:59:0.644:2	./.	./.
chr16	2164324	rs35667726	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,38:32:62:0.613:2	./.	./.
chr16	2165395	rs138575342	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,33:32:57:0.579:2	./.
chr16	2201579	rs62642473	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,25:30:51:0.490:2	./.	./.	./.	./.	./.	./.	./.
chr16	2223855	rs184394516	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,14:30:22:0.636:2	./.	./.	./.	./.
chr16	2226561	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:33:170:0.024:2	./.	./.	./.
chr16	2257105	rs26862	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,113:30:114:0.991:2	0/1:116,52:29:168:0.310:2	./.	0/1:34,40:30:74:0.541:2	./.	0/1:58,40:31:98:0.408:2	./.	./.
chr16	2259393	rs1129185	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:15,14:31:30:0.483:2	0/1:13,11:33:24:0.458:2	./.	./.	0/1:37,31:32:68:0.456:2	./.	./.	./.	./.	0/1:25,23:32:48:0.479:2	./.
chr16	2259986	rs149819631	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,17:31:36:0.472:2	./.
chr16	2260567	rs26857	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:12,26:30:38:0.684:2	0/1:6,12:32:18:0.667:2	./.	0/1:0,35:30:35:1.00:2	./.	./.	0/1:15,13:30:28:0.464:2	./.	0/1:21,17:30:38:0.447:2	./.	./.
chr16	2260612	rs26856	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:30:25:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,18:32:18:1.00:2	0/1:8,8:33:16:0.500:2	./.	0/1:10,4:32:14:0.286:2	0/1:9,6:31:15:0.400:2	0/1:19,11:31:30:0.367:2	./.	./.
chr16	2263929	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,39:33:96:0.406:2	0/1:31,28:32:59:0.475:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	2282256	rs26839	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:31:19:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,4:31:5:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,9:31:9:1.00:2
chr16	2283170	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,29:27:59:0.492:2	./.	./.	./.	./.
chr16	2285357	rs26840	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:11,12:31:23:0.522:2	0/1:8,10:31:18:0.556:2	./.	0/1:0,24:30:24:1.00:2	./.	./.	0/1:3,5:29:8:0.625:2	0/1:8,12:30:20:0.600:2	0/1:12,15:32:27:0.556:2	./.	./.
chr16	2287404	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,6:31:9:0.667:2	./.	./.	./.	./.
chr16	2301520	rs11541763	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:34:6:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr16	2301547	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,5:33:17:0.294:2	./.	./.	./.	./.	./.	./.
chr16	2314218	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,5:27:59:0.085:2	0/1:68,4:30:72:0.056:2	./.	./.	./.
chr16	2331430	rs149532	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:32:42:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,54:33:54:1.00:2	0/1:0,42:32:42:1.00:2	0/1:31,23:32:54:0.426:2	0/1:0,53:32:53:1.00:2	0/1:0,73:32:74:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,45:32:45:1.00:2	0/1:1,47:32:48:0.979:2
chr16	2333245	rs376565433	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,31:30:79:0.392:2	./.	./.	./.	./.	./.	./.	./.
chr16	2334358	rs35089233	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,77:30:178:0.433:2	./.
chr16	2348528	rs323043	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,24:29:54:0.444:2	./.	./.	./.	./.	./.	./.	./.
chr16	2367336	rs13332514	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,24:32:50:0.480:2	0/1:12,13:31:25:0.520:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	2369715	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:42,12:11:54:0.222:2	./.	./.	0/1:111,12:15:123:0.098:2	./.	./.	./.	./.	./.	./.	./.
chr16	2512523	rs3810794	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:31:14:0.571:2	./.	./.	0/1:9,9:33:18:0.500:2	0/1:5,6:33:11:0.545:2	./.	0/1:7,12:33:19:0.632:2	./.
chr16	2522849	rs144737036	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,3:30:11:0.273:2	./.	./.	./.	./.
chr16	2546353	rs201374999	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:31:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	2570793	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,9:26:22:0.409:2	./.	./.	./.
chr16	2579545	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,6:16:29:0.207:2	./.	./.	0/1:27,7:25:34:0.206:2	./.	./.	./.
chr16	2580374	rs377703004	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:32:91:0.044:2	./.
chr16	2580755	rs76722821	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,9:32:24:0.375:2	./.	./.	./.	./.
chr16	2580996	rs201417710	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,6:23:100:0.060:2	./.	./.	./.	./.	./.
chr16	2581081	rs71386675	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,58:32:102:0.569:2	./.	./.
chr16	2581111	rs139815200	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,41:31:76:0.539:2	./.	./.	./.	./.	./.	./.	./.
chr16	2581328	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:32:89:0.045:2	./.	./.	./.
chr16	2607713	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:193,4:34:197:0.020:2	./.	./.	./.	./.	./.	./.
chr16	2607730	rs200979773	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,73:31:135:0.541:2	0/1:31,24:31:55:0.436:2	0/1:26,3:31:29:0.103:2	0/1:147,37:31:184:0.201:2	0/1:146,50:31:196:0.255:2	./.	0/1:153,38:31:191:0.199:2	./.	0/1:129,39:32:168:0.232:2	0/1:176,4:33:180:0.022:2	./.
chr16	2611899	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:155,39:31:194:0.201:2	./.	./.	./.	0/1:151,38:32:189:0.201:2	./.	./.
chr16	2615609	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:160,35:32:195:0.179:2	./.	./.	./.	./.	./.	./.	./.
chr16	2615615	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,40:29:192:0.208:2	./.
chr16	2636701	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:32:94:0.043:2	./.
chr16	2745936	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,22:32:120:0.183:2	./.	./.	./.	./.	./.
chr16	2808513	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,6:33:53:0.113:2
chr16	2812270	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,4:32:32:0.125:2	./.	./.	./.	./.
chr16	2812482	rs79910471	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,13:31:24:0.542:2	0/1:10,6:29:16:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	2812647	rs2240142	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:15,19:31:34:0.559:2	0/1:16,6:31:22:0.273:2	./.	0/1:37,24:31:61:0.393:2	./.	0/1:21,20:31:41:0.488:2	./.	./.	./.	./.	0/1:30,20:32:50:0.400:2
chr16	2812890	rs2240141	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,18:33:36:0.500:2	0/1:8,11:33:19:0.579:2	0/1:0,7:33:7:1.00:2	0/1:8,27:33:35:0.771:2	0/1:0,42:33:42:1.00:2	0/1:28,15:33:43:0.349:2	0/1:0,32:33:32:1.00:2	0/1:1,50:33:51:0.980:2	0/1:0,27:33:27:1.00:2	0/1:0,16:32:16:1.00:2	0/1:12,18:33:30:0.600:2
chr16	2812939	rs2240140	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,11:32:31:0.355:2	0/1:7,8:31:15:0.533:2	0/1:1,5:32:6:0.833:2	0/1:11,13:31:24:0.542:2	0/1:0,27:30:27:1.00:2	0/1:22,13:30:35:0.371:2	./.	0/1:3,29:30:32:0.906:2	0/1:0,23:32:23:1.00:2	0/1:0,22:29:22:1.00:2	0/1:14,9:30:23:0.391:2
chr16	2813517	rs140191989	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,20:31:30:0.667:2	./.	./.	./.	./.	./.	./.
chr16	2814162	rs3094775	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,13:33:28:0.464:2	0/1:9,10:33:19:0.526:2	./.	0/1:28,18:32:46:0.391:2	0/1:0,27:32:27:1.00:2	./.	0/1:0,27:33:27:1.00:2	0/1:0,21:32:21:1.00:2	0/1:24,13:33:37:0.351:2	0/1:0,24:32:24:1.00:2	0/1:17,19:31:36:0.528:2
chr16	2815237	rs3094773	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:30:37:1.00:2	0/1:0,17:28:17:1.00:2	0/1:0,4:28:4:1.00:2	0/1:0,27:28:27:1.00:2	0/1:0,41:29:41:1.00:2	0/1:0,25:29:25:1.00:2	0/1:0,31:29:31:1.00:2	0/1:0,44:29:44:1.00:2	0/1:1,35:30:36:0.972:2	0/1:0,23:29:23:1.00:2	0/1:0,33:29:33:1.00:2
chr16	2816224	rs151100831	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,44:32:84:0.524:2	./.	./.	./.	./.	./.	./.
chr16	2816441	rs147093378	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,25:30:39:0.641:2	0/1:11,16:31:27:0.593:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	2816519	rs138447860	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,22:31:48:0.458:2	0/1:13,8:30:21:0.381:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	2816892	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:31:128:0.031:2	./.	./.	./.	./.
chr16	2817510	rs148311081	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,32:31:74:0.432:2
chr16	2818066	rs144257955	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:33:14:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	2818161	rs2301802	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,32:32:66:0.485:2	0/1:20,17:33:37:0.459:2	0/1:0,9:32:9:1.00:2	0/1:39,47:31:86:0.547:2	0/1:0,108:31:108:1.00:2	0/1:53,52:32:105:0.495:2	0/1:0,131:31:131:1.00:2	0/1:1,116:31:117:0.991:2	0/1:0,75:32:75:1.00:2	0/1:0,91:32:91:1.00:2	0/1:40,33:32:73:0.452:2
chr16	2820882	rs1050134	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:25,24:29:50:0.490:2	0/1:20,12:30:32:0.375:2	./.	0/1:32,29:30:61:0.475:2	./.	0/1:39,49:28:88:0.557:2	0/1:25,29:28:54:0.537:2	./.	./.	./.	0/1:30,40:29:70:0.571:2
chr16	2821525	rs4036	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,33:32:87:0.379:2	0/1:26,39:31:65:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	2821573	rs8017	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,39:30:71:0.549:2	0/1:36,21:32:57:0.368:2	0/1:0,13:31:13:1.00:2	0/1:73,49:31:122:0.402:2	0/1:62,56:31:118:0.475:2	0/1:0,105:31:105:1.00:2	0/1:7,132:31:139:0.950:2	0/1:74,68:31:142:0.479:2	0/1:53,38:31:91:0.418:2	0/1:4,100:31:104:0.962:2	0/1:0,104:31:104:1.00:2
chr16	2834711	rs45570838	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,50:31:117:0.427:2	./.	./.	./.	./.	0/1:44,24:30:68:0.353:2	./.
chr16	2848596	rs74675777	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,10:31:19:0.526:2	./.	./.	./.	./.	./.	./.	./.
chr16	2867450	rs71386691	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.	0/1:0,4:34:4:1.00:2	./.	0/1:0,2:32:2:1.00:2	0/1:0,4:32:4:1.00:2	./.	./.
chr16	2871555	rs10641	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,10:31:23:0.435:2	0/1:8,6:31:14:0.429:2	0/1:0,2:30:2:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,15:30:15:1.00:2	0/1:13,25:30:38:0.658:2	0/1:0,34:31:34:1.00:2	0/1:11,10:31:21:0.476:2	0/1:16,13:32:29:0.448:2	./.
chr16	2880745	rs34779825	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,45:33:113:0.398:2	./.	./.
chr16	2949149	rs143698118	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	2980835	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,4:30:13:0.308:2
chr16	2983138	rs2074363	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,27:32:48:0.563:2	./.	./.	0/1:20,16:32:36:0.444:2
chr16	2983483	rs2074362	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,11:32:36:0.306:2	./.	./.	0/1:13,24:33:37:0.649:2
chr16	3014942	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.
chr16	3063540	rs372231955	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:31:139:0.029:2	./.	./.	./.
chr16	3065596	rs2257295	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,36:29:36:1.00:2	0/1:0,29:30:29:1.00:2	./.	./.	./.	./.	0/1:1,37:29:38:0.974:2	0/1:51,12:28:63:0.190:2	./.	0/1:25,14:30:39:0.359:2	./.
chr16	3065635	rs138377300	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,22:32:39:0.564:2	./.	./.	./.	./.	0/1:39,30:34:69:0.435:2	./.	./.
chr16	3065924	rs2269911	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,19:31:19:1.00:2	./.	0/1:103,86:32:189:0.455:2	./.	./.	./.	./.	./.	0/1:0,109:32:109:1.00:2
chr16	3073240	rs10508	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,20:30:36:0.556:2	./.	./.	./.	./.	./.	0/1:0,43:29:43:1.00:2
chr16	3074298	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:33:60:0.067:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	3074336	rs116159486	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,12:31:24:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	3075999	rs2245000	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,110:32:110:1.00:2	0/1:0,50:33:50:1.00:2	0/1:4,11:33:15:0.733:2	./.	0/1:46,51:32:97:0.526:2	./.	0/1:0,125:32:125:1.00:2	0/1:70,66:33:136:0.485:2	0/1:53,64:34:117:0.547:2	0/1:41,46:32:87:0.529:2	0/1:0,132:33:132:1.00:2
chr16	3078165	rs12448103	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:34:3:1.00:2	./.	./.
chr16	3079685	rs2244494	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:31:4:0.750:2	0/1:4,4:30:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:25:7:0.429:2	./.
chr16	3085335	rs7204908	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:21,14:32:35:0.400:2	0/1:5,10:32:15:0.667:2	./.	./.	./.	./.	0/1:3,53:32:56:0.946:2	0/1:28,26:32:54:0.481:2	./.	0/1:16,21:32:37:0.568:2	./.
chr16	3085375	rs11077096	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:13,7:27:24:0.350:2	0/1:5,11:31:16:0.688:2	./.	./.	./.	./.	0/1:1,24:29:31:0.960:2	0/1:14,11:29:28:0.440:2	./.	0/1:11,14:31:25:0.560:2	./.
chr16	3100095	rs10431961	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:4,3:30:7:0.429:2	0/1:3,6:27:9:0.667:2	./.	0/1:5,12:30:17:0.706:2	./.	./.	0/1:6,9:30:15:0.600:2	0/1:13,6:31:19:0.316:2	./.	0/1:4,4:28:8:0.500:2	./.
chr16	3100447	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,32:32:68:0.471:2	./.	./.	./.	./.	./.	./.	./.
chr16	3107581	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2	./.	./.	./.	./.	./.	./.
chr16	3108904	rs200461438	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:33:5:0.800:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	3108960	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,11:31:14:0.846:2	./.	./.	./.
chr16	3109032	rs7188234	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,46:30:88:0.523:2	./.	./.	./.
chr16	3115839	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:32:185:0.022:2	./.
chr16	3117354	rs1555001	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,31:32:31:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,4:32:4:1.00:2	./.	./.	./.	./.	0/1:31,46:32:77:0.597:2	./.	./.	./.
chr16	3119020	rs371244098	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:111,78:33:189:0.413:2	0/1:63,60:33:123:0.488:2	0/1:22,4:33:26:0.154:2	0/1:112,71:32:183:0.388:2	0/1:151,38:32:189:0.201:2	0/1:102,79:33:181:0.436:2	0/1:139,50:32:190:0.265:2	0/1:151,43:32:194:0.222:2	0/1:96,85:33:181:0.470:2	0/1:107,82:33:189:0.434:2	0/1:105,85:32:190:0.447:2
chr16	3119167	rs34184287	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:96,80:30:176:0.455:2	0/1:68,46:31:115:0.404:2	0/1:22,7:32:29:0.241:2	0/1:91,102:32:193:0.528:2	0/1:138,48:31:186:0.258:2	0/1:99,98:31:197:0.497:2	0/1:126,47:32:173:0.272:2	0/1:138,48:31:186:0.258:2	0/1:83,104:31:187:0.556:2	0/1:82,80:31:163:0.494:2	0/1:96,92:30:188:0.489:2
chr16	3119201	rs139497186	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,48:32:165:0.291:2	0/1:78,28:33:106:0.264:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	3119304	rs2981599	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,28:31:79:0.354:2	0/1:26,15:31:41:0.366:2	0/1:5,3:33:8:0.375:2	0/1:53,26:30:79:0.329:2	0/1:32,19:31:51:0.373:2	0/1:61,30:31:92:0.330:2	0/1:49,7:32:57:0.125:2	0/1:56,7:32:63:0.111:2	0/1:60,34:32:94:0.362:2	0/1:48,28:32:76:0.368:2	0/1:57,40:32:97:0.412:2
chr16	3140616	rs3810808	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	./.	./.	./.	./.
chr16	3165425	rs909410	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:30,23:28:53:0.434:2	0/1:20,16:31:36:0.444:2	./.	0/1:20,40:28:60:0.667:2	./.	./.	0/1:51,23:30:74:0.311:2	./.	0/1:0,53:30:53:1.00:2	0/1:31,29:30:61:0.483:2	./.
chr16	3170188	rs12032	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:30:8:0.750:2	./.	0/1:0,11:31:11:1.00:2	./.	0/1:0,3:30:3:1.00:2	./.	./.	./.
chr16	3254408	rs140644764	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,18:30:27:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	3254470	rs1834026	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,178:33:180:0.989:2	0/1:2,129:32:131:0.985:2	0/1:33,19:32:52:0.365:2	./.	0/1:4,170:32:174:0.977:2	./.	./.	0/1:108,81:33:189:0.429:2	0/1:103,79:33:182:0.434:2	./.	0/1:101,90:32:191:0.471:2
chr16	3254972	rs2075851	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,140:32:141:0.993:2	0/1:0,96:32:96:1.00:2	0/1:11,17:33:28:0.607:2	./.	0/1:3,186:32:189:0.984:2	./.	./.	0/1:106,85:33:191:0.445:2	0/1:115,80:34:195:0.410:2	./.	0/1:113,81:33:194:0.418:2
chr16	3293880	rs11466045	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,41:32:109:0.376:2	./.	./.	./.
chr16	3293888	rs1231122	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:33:7:0.429:2	0/1:0,82:33:82:1.00:2	./.	0/1:0,83:32:83:1.00:2	0/1:42,32:33:74:0.432:2	./.	./.	0/1:0,63:33:63:1.00:2	0/1:46,37:33:83:0.446:2
chr16	3293922	rs1231123	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,59:31:59:1.00:2	./.	0/1:0,57:30:57:1.00:2	0/1:21,20:31:41:0.488:2	./.	./.	0/1:0,44:31:44:1.00:2	0/1:33,33:32:66:0.500:2
chr16	3294243	rs370349451	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:123,4:33:127:0.031:2	./.	./.	./.	./.	./.	./.
chr16	3297073	rs224206	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,73:29:74:0.986:2	0/1:0,41:28:41:1.00:2	0/1:14,6:28:20:0.300:2	./.	0/1:0,165:29:165:1.00:2	./.	0/1:89,70:29:159:0.440:2	0/1:2,148:28:150:0.987:2	0/1:0,121:30:121:1.00:2	./.	0/1:56,42:29:98:0.429:2
chr16	3297175	rs224207	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,83:33:84:0.988:2	0/1:0,50:32:50:1.00:2	0/1:8,11:32:19:0.579:2	./.	0/1:1,123:33:124:0.992:2	./.	0/1:90,51:33:142:0.362:2	0/1:3,132:33:135:0.978:2	0/1:0,116:34:116:1.00:2	./.	0/1:84,35:33:119:0.294:2
chr16	3297181	rs224208	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,81:31:82:0.988:2	0/1:0,47:31:47:1.00:2	0/1:7,10:32:17:0.588:2	./.	0/1:1,123:31:124:0.992:2	./.	0/1:79,51:32:130:0.392:2	0/1:3,127:31:130:0.977:2	0/1:0,114:32:114:1.00:2	./.	0/1:80,35:32:115:0.304:2
chr16	3299749	rs224213	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,88:31:88:1.00:2	0/1:0,44:32:44:1.00:2	0/1:9,8:29:17:0.471:2	./.	0/1:0,123:31:123:1.00:2	./.	0/1:67,84:32:151:0.556:2	0/1:2,137:31:139:0.986:2	0/1:0,126:32:126:1.00:2	./.	0/1:45,33:31:78:0.423:2
chr16	3304573	rs224223	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.
chr16	3304654	rs224224	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,4:34:4:1.00:2	0/1:0,4:33:4:1.00:2	./.	./.	./.	./.	./.	./.	0/1:0,4:33:4:1.00:2	0/1:0,3:31:3:1.00:2	./.
chr16	3304762	rs224225	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:30:18:1.00:2	0/1:0,12:29:12:1.00:2	0/1:0,2:30:2:1.00:2	0/1:19,13:29:32:0.406:2	0/1:4,13:29:17:0.765:2	0/1:19,13:30:32:0.406:2	0/1:21,10:28:31:0.323:2	0/1:0,34:29:34:1.00:2	0/1:0,24:29:24:1.00:2	0/1:0,12:29:12:1.00:2	0/1:0,32:29:32:1.00:2
chr16	3336033	rs138244751	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,84:31:157:0.535:2	./.	./.	./.	./.	./.	./.	./.
chr16	3336040	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.
chr16	3339435	rs220379	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,18:33:52:0.346:2	0/1:18,8:31:28:0.308:2	0/1:2,5:31:7:0.714:2	0/1:37,29:33:66:0.439:2	0/1:40,29:31:69:0.420:2	0/1:36,23:30:59:0.390:2	0/1:42,28:32:70:0.400:2	0/1:42,38:32:80:0.475:2	0/1:48,28:33:76:0.368:2	0/1:0,39:32:39:1.00:2	0/1:46,47:33:93:0.505:2
chr16	3340258	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,4:29:59:0.068:2	./.	./.	./.	./.	./.	./.	./.
chr16	3350639	rs7185015	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,23:31:50:0.460:2	0/1:16,12:32:28:0.429:2	./.	0/1:29,21:33:50:0.420:2	0/1:22,16:33:38:0.421:2	0/1:19,13:32:32:0.406:2	0/1:16,6:32:22:0.273:2	0/1:29,15:32:44:0.341:2	0/1:38,26:33:64:0.406:2	0/1:0,34:33:34:1.00:2	0/1:47,30:33:77:0.390:2
chr16	3367229	rs17611866	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,20:28:41:0.488:2	0/1:14,6:30:20:0.300:2	0/1:7,6:30:13:0.462:2	0/1:32,31:31:63:0.492:2	0/1:33,29:30:62:0.468:2	0/1:41,31:30:72:0.431:2	0/1:35,22:30:57:0.386:2	0/1:42,27:30:69:0.391:2	0/1:47,19:27:66:0.288:2	0/1:0,50:30:50:1.00:2	0/1:44,38:29:82:0.463:2
chr16	3405986	rs1218762	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,36:33:70:0.514:2	0/1:20,27:32:47:0.574:2	./.	0/1:60,45:32:105:0.429:2	0/1:44,26:32:70:0.371:2	./.	./.	./.	./.	./.	./.
chr16	3405994	rs1228348	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:29:67:1.00:2	0/1:0,47:28:47:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,110:29:110:1.00:2	0/1:54,26:29:80:0.325:2	0/1:48,63:29:111:0.568:2	0/1:2,70:29:72:0.972:2	0/1:73,72:29:145:0.497:2	0/1:0,144:30:144:1.00:2	0/1:0,88:29:88:1.00:2	0/1:0,102:28:102:1.00:2
chr16	3406291	rs369015937	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,17:30:48:0.354:2	0/1:26,13:30:39:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	3406387	rs1218763	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:31:31:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,55:33:55:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,30:31:30:1.00:2
chr16	3406478	rs113396384	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,30:32:61:0.492:2
chr16	3406516	rs11643487	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,36:29:63:0.571:2	0/1:19,19:29:38:0.500:2	./.	0/1:53,47:29:100:0.470:2	0/1:77,60:28:137:0.438:2	0/1:45,33:29:78:0.423:2	0/1:75,71:28:146:0.486:2	./.	0/1:33,41:31:74:0.554:2	./.	./.
chr16	3406626	rs11648783	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,34:31:73:0.466:2	0/1:24,21:31:45:0.467:2	./.	0/1:55,49:30:104:0.471:2	0/1:66,58:30:125:0.468:2	./.	./.	./.	./.	./.	./.
chr16	3406949	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:33:125:0.032:2	./.
chr16	3407258	rs4578649	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,19:30:32:0.594:2	0/1:4,8:32:12:0.667:2	0/1:0,4:29:4:1.00:2	0/1:4,15:29:19:0.789:2	./.	./.	0/1:5,5:28:10:0.500:2	0/1:13,9:29:22:0.409:2	0/1:24,9:31:33:0.273:2	0/1:2,14:29:16:0.875:2	0/1:0,30:30:30:1.00:2
chr16	3434699	rs27230	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:68,74:33:142:0.521:2	0/1:41,38:32:79:0.481:2	./.	0/1:78,59:33:137:0.431:2	./.	./.	./.	./.	./.	./.	./.
chr16	3434710	rs191971415	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:32:12:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	3447282	rs27241	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:36,31:33:67:0.463:2	0/1:24,25:32:49:0.510:2	./.	0/1:42,39:33:81:0.481:2	./.	./.	./.	./.	./.	./.	./.
chr16	3452193	rs37811	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:26:27:1.00:2	0/1:0,16:28:16:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,36:30:36:1.00:2	0/1:16,15:29:31:0.484:2	0/1:24,23:32:47:0.489:2	0/1:0,34:29:34:1.00:2	0/1:26,19:30:45:0.422:2	0/1:0,28:30:28:1.00:2	0/1:0,25:27:25:1.00:2	0/1:0,36:28:36:1.00:2
chr16	3452195	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,3:32:28:0.107:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	3487201	rs2270492	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,35:31:79:0.455:2	0/1:35,19:31:54:0.352:2	./.	0/1:42,29:33:71:0.408:2	./.	./.
chr16	3487272	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,4:32:73:0.055:2	./.	./.	./.	./.	./.	./.
chr16	3490879	rs2270493	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,27:30:48:0.563:2	0/1:19,35:32:54:0.648:2	./.	0/1:31,30:33:61:0.492:2	./.	./.
chr16	3490922	rs2270494	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:14,22:33:36:0.611:2	0/1:11,10:33:21:0.476:2	0/1:0,5:32:5:1.00:2	./.	0/1:18,14:31:32:0.438:2	./.	0/1:23,19:32:42:0.452:2	0/1:17,21:32:38:0.553:2	0/1:25,19:34:44:0.432:2	0/1:0,33:31:33:1.00:2	0/1:0,51:32:51:1.00:2
chr16	3533577	rs1137454	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,70:31:133:0.526:2	0/1:38,34:31:72:0.472:2	0/1:0,23:33:23:1.00:2	0/1:92,68:32:160:0.425:2	0/1:79,69:31:148:0.466:2	0/1:0,159:32:159:1.00:2	0/1:103,70:31:173:0.405:2	0/1:96,73:32:169:0.432:2	0/1:86,74:31:160:0.463:2	0/1:0,150:31:150:1.00:2	0/1:0,163:31:163:1.00:2
chr16	3544792	rs111804067	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,6:31:7:0.857:2
chr16	3545364	rs56205903	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,30:29:83:0.361:2	./.	./.	./.
chr16	3545385	rs201278369	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,19:30:47:0.404:2	./.
chr16	3556326	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:31:107:0.037:2	./.	./.	./.	./.	./.
chr16	3565564	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,3:31:18:0.167:2	./.	./.	./.	./.
chr16	3586230	rs9790	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,25:32:49:0.510:2	0/1:17,11:32:28:0.393:2	./.	0/1:0,59:32:59:1.00:2	0/1:15,18:32:33:0.545:2	./.	./.	./.	./.	./.	./.
chr16	3592249	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:32:118:0.034:2	./.	./.
chr16	3592710	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:29:47:0.085:2
chr16	3594296	rs35402060	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,32:32:92:0.348:2	./.	./.	./.
chr16	3613126	rs12445430	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	0/1:5,4:31:9:0.444:2	./.	./.	0/1:5,7:28:12:0.583:2	./.	./.	0/1:5,9:31:14:0.643:2
chr16	3613150	rs8044743	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:29:3:1.00:2	0/1:0,2:36:2:1.00:2	./.	./.	./.	./.	./.	./.
chr16	3613207	rs9940099	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,6:32:12:0.500:2	./.	./.	./.
chr16	3613637	rs77463028	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,36:33:70:0.514:2	./.
chr16	3613904	rs117213971	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,6:31:9:0.667:2	./.	./.	./.
chr16	3613928	rs45483498	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:30:4:0.750:2	./.	./.	./.
chr16	3614540	rs201854363	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	3632347	rs111738042	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,9:32:19:0.500:2
chr16	3639139	rs3810812	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,14:33:23:0.609:2	0/1:5,7:33:12:0.583:2	./.	0/1:1,34:33:35:0.971:2	0/1:0,10:34:10:1.00:2	./.	0/1:16,10:32:26:0.385:2	0/1:0,36:32:36:1.00:2	./.	0/1:4,8:33:12:0.667:2	0/1:10,14:32:24:0.583:2
chr16	3639295	rs368388100	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:30:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	3639827	rs3810813	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,4:30:14:0.286:2	./.	./.	./.	./.	./.	./.
chr16	3639977	rs3827530	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,32:30:70:0.464:2	./.	./.	./.
chr16	3640274	rs714181	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,46:32:101:0.455:2	./.	0/1:34,53:33:87:0.609:2	./.
chr16	3640477	rs76488917	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,35:31:59:0.593:2	./.
chr16	3640784	rs78637028	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,14:31:32:0.438:2	./.	./.	./.
chr16	3640785	rs59939128	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,14:31:32:0.438:2	./.	./.	./.
chr16	3640889	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:152,4:33:156:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr16	3645607	rs77985244	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,12:27:22:0.545:2	./.	./.	./.
chr16	3647692	rs74319927	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	./.	./.
chr16	3650987	rs113490934	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,35:30:113:0.310:2	./.	./.	./.
chr16	3650991	rs112511042	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,37:30:113:0.327:2	./.	./.	./.
chr16	3651014	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:33:114:0.035:2	./.	./.	./.	./.
chr16	3656482	rs8061528	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:32:15:0.600:2	./.	0/1:65,48:32:113:0.425:2	./.	0/1:51,56:32:107:0.523:2	0/1:62,76:32:138:0.551:2	./.	./.	0/1:64,56:32:120:0.467:2
chr16	3656557	rs28516461	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,76:32:120:0.633:2	./.
chr16	3656625	rs79842542	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,91:32:180:0.506:2	./.	./.	./.
chr16	3656680	rs74640850	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,48:31:84:0.571:2	./.	./.	./.
chr16	3707091	rs8176938	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,57:32:116:0.491:2	./.	./.	./.
chr16	3707747	rs1053874	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,4:32:20:0.200:2	./.	0/1:76,63:31:139:0.453:2	./.	0/1:57,78:31:135:0.578:2	0/1:3,139:31:142:0.979:2	./.	./.	0/1:49,65:31:114:0.570:2
chr16	3708170	rs2791	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,52:31:108:0.481:2	./.	./.	./.
chr16	3708193	rs1059857	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,45:30:109:0.413:2	./.	./.	./.	./.	./.	./.
chr16	3713474	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:31:113:0.035:2	./.
chr16	3714438	rs144787542	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,11:32:24:0.458:2	0/1:5,10:30:15:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	3721773	rs1136948	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:30:6:0.500:2	./.	./.	./.	0/1:21,13:33:35:0.382:2	0/1:14,11:31:25:0.440:2	./.	./.	0/1:13,14:33:27:0.519:2
chr16	3724352	rs11541712	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,99:31:191:0.518:2	./.	./.	./.
chr16	3724465	rs13926	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,37:27:68:0.544:2	0/1:21,34:28:55:0.618:2	0/1:13,11:30:24:0.458:2	0/1:0,126:28:126:1.00:2	./.	0/1:1,117:28:118:0.992:2	./.	0/1:77,64:28:141:0.454:2	./.	./.	./.
chr16	3726074	rs61753377	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,22:32:66:0.333:2	./.	./.	./.
chr16	3726075	rs61753378	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,22:31:66:0.333:2	./.	./.	./.
chr16	3729714	rs61753379	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,10:32:23:0.435:2	./.	./.	./.
chr16	3778427	rs55960450	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,22:30:43:0.512:2	./.
chr16	3779060	rs181646656	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,11:31:18:0.611:2	./.
chr16	3779612	rs61731405	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,61:27:166:0.367:2	./.	./.	./.
chr16	3795363	rs3025684	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,39:32:87:0.448:2	./.
chr16	3828172	rs130003	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,14:32:48:0.292:2	./.	./.
chr16	3831230	rs61753381	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,29:31:86:0.337:2	./.
chr16	3843454	rs61759495	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,15:31:20:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	3843578	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:145,4:32:149:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr16	3860640	rs3025702	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,62:32:144:0.431:2	./.
chr16	3929893	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:30:117:0.034:2	./.	./.	./.
chr16	4016676	rs2230742	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,127:28:127:1.00:2	0/1:0,48:27:48:1.00:2	0/1:0,28:29:28:1.00:2	0/1:95,90:28:185:0.486:2	0/1:1,183:27:184:0.995:2	0/1:0,183:28:185:1.00:2	0/1:1,182:28:183:0.995:2	0/1:0,187:27:187:1.00:2	0/1:0,168:28:168:1.00:2	0/1:66,85:27:151:0.563:2	0/1:1,129:28:130:0.992:2
chr16	4016943	rs2230741	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	4027605	rs2240735	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,82:29:83:0.988:2	0/1:0,45:30:45:1.00:2	0/1:0,16:30:16:1.00:2	0/1:80,70:29:152:0.467:2	0/1:0,152:29:152:1.00:2	0/1:103,62:28:165:0.376:2	0/1:3,153:28:156:0.981:2	0/1:3,155:29:158:0.981:2	0/1:0,101:30:101:1.00:2	0/1:43,46:28:89:0.517:2	0/1:0,96:29:96:1.00:2
chr16	4033427	rs2230740	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,68:30:152:0.450:2	./.	./.	./.	./.	./.
chr16	4033436	rs2230739	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:24,37:32:61:0.607:2	0/1:23,28:33:51:0.549:2	0/1:6,11:34:17:0.647:2	./.	0/1:0,120:32:120:1.00:2	./.	0/1:57,77:33:134:0.575:2	./.	0/1:49,62:33:111:0.559:2	./.	0/1:2,75:33:77:0.974:2
chr16	4164337	rs887248	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,21:30:53:0.396:2	0/1:28,14:31:42:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	4164364	rs2230738	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,36:31:72:0.500:2	0/1:25,38:31:63:0.603:2	0/1:5,5:29:10:0.500:2	0/1:50,64:31:114:0.561:2	./.	0/1:65,42:30:108:0.393:2	0/1:58,51:31:109:0.468:2	./.	./.	./.	./.
chr16	4164937	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:32:130:0.031:2	./.	./.	./.	./.
chr16	4165432	rs2530898	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:23:39:1.00:2	0/1:0,28:25:28:1.00:2	0/1:0,5:27:5:1.00:2	0/1:0,49:25:49:1.00:2	0/1:0,55:25:56:1.00:2	0/1:0,48:25:48:1.00:2	0/1:0,54:24:54:1.00:2	0/1:0,59:24:60:1.00:2	0/1:0,58:25:58:1.00:2	0/1:0,37:25:37:1.00:2	0/1:0,35:24:35:1.00:2
chr16	4245693	rs10852643	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:32:94:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,16:33:16:1.00:2	0/1:1,102:32:103:0.990:2	./.	0/1:0,94:32:94:1.00:2	0/1:2,156:32:158:0.987:2	0/1:0,166:32:166:1.00:2	0/1:0,103:33:103:1.00:2	0/1:46,53:32:99:0.535:2	0/1:1,109:32:110:0.991:2
chr16	4292002	rs77545585	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:10,12:28:22:0.545:2	0/1:12,3:31:15:0.200:2	./.	./.	0/1:18,26:29:44:0.591:2	./.	0/1:35,11:28:46:0.239:2	./.	./.	0/1:21,11:30:32:0.344:2	./.
chr16	4310468	rs251732	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,23:30:47:0.489:2	0/1:19,12:31:31:0.387:2	0/1:0,9:32:9:1.00:2	0/1:54,30:31:84:0.357:2	0/1:30,33:30:63:0.524:2	0/1:2,73:31:75:0.973:2	0/1:0,41:30:41:1.00:2	./.	0/1:0,69:32:69:1.00:2	0/1:0,56:30:56:1.00:2	0/1:27,31:31:58:0.534:2
chr16	4386814	rs669561	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:29:80:1.00:2	0/1:0,55:29:55:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,166:29:167:1.00:2	0/1:1,166:29:167:0.994:2	0/1:0,174:29:174:1.00:2	0/1:1,178:28:179:0.994:2	0/1:0,180:28:180:1.00:2	0/1:2,158:29:160:0.988:2	0/1:0,116:29:116:1.00:2	0/1:0,120:28:120:1.00:2
chr16	4387062	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr16	4387261	rs3810817	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:31:5:1.00:2	0/1:9,4:29:13:0.308:2	./.	./.	./.
chr16	4390358	rs11989	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,61:31:61:1.00:2	0/1:36,20:32:56:0.357:2	./.	./.	./.
chr16	4393257	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:31:124:0.032:2	./.	./.
chr16	4410998	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:31:50:0.080:2
chr16	4411216	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,9:13:41:0.220:2	./.	./.	./.	./.	./.
chr16	4412007	rs35864045	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,40:32:67:0.597:2
chr16	4414987	rs2277851	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:31:17:1.00:2	0/1:0,15:31:15:1.00:2	./.	0/1:1,47:30:48:0.979:2	0/1:2,35:31:37:0.946:2	0/1:24,12:29:36:0.333:2	./.	./.	0/1:0,31:32:31:1.00:2	0/1:0,23:30:23:1.00:2	0/1:18,8:32:26:0.308:2
chr16	4431013	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,11:32:33:0.333:2	./.	./.	./.
chr16	4431202	rs758044	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:30:29:1.00:2	0/1:0,24:29:24:1.00:2	0/1:0,6:28:6:1.00:2	0/1:0,57:28:57:1.00:2	0/1:1,56:29:57:0.982:2	0/1:1,47:29:48:0.979:2	0/1:22,32:28:54:0.593:2	0/1:24,27:28:52:0.529:2	0/1:1,47:30:48:0.979:2	0/1:0,30:28:30:1.00:2	0/1:0,30:29:30:1.00:2
chr16	4431360	rs35713275	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:34:4:0.750:2	./.
chr16	4432029	rs3810818	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,11:28:11:1.00:2	0/1:0,5:24:5:1.00:2	0/1:0,2:27:2:1.00:2	0/1:0,22:27:22:1.00:2	0/1:0,10:30:10:1.00:2	0/1:8,7:28:15:0.467:2	0/1:5,15:28:20:0.750:2	0/1:6,5:27:11:0.455:2	0/1:0,13:29:13:1.00:2	0/1:0,8:27:8:1.00:2	0/1:0,3:29:3:1.00:2
chr16	4445327	rs3747579	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:32:53:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,11:32:11:1.00:2	0/1:2,48:32:50:0.960:2	0/1:0,43:32:43:1.00:2	0/1:33,55:32:88:0.625:2	0/1:32,25:32:57:0.439:2	0/1:45,29:32:74:0.392:2	0/1:0,48:33:48:1.00:2	0/1:0,37:33:37:1.00:2	0/1:39,34:32:73:0.466:2
chr16	4463352	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:32:134:0.030:2	./.	./.
chr16	4476089	rs1139652	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,85:33:86:0.988:2	0/1:0,52:33:52:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,111:33:111:1.00:2	0/1:2,155:32:158:0.987:2	0/1:65,73:32:138:0.529:2	0/1:97,70:33:167:0.419:2	0/1:76,80:33:156:0.513:2	0/1:62,80:34:142:0.563:2	0/1:0,97:33:97:1.00:2	0/1:0,110:32:110:1.00:2
chr16	4484396	rs1139653	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,20:32:20:1.00:2	0/1:0,16:31:16:1.00:2	./.	0/1:0,17:30:17:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,16:29:16:1.00:2	0/1:9,13:29:22:0.591:2	0/1:8,9:30:17:0.529:2	0/1:16,16:31:32:0.500:2	0/1:0,12:30:12:1.00:2	0/1:10,15:32:25:0.600:2
chr16	4496973	rs2304633	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:30:68:1.00:2	0/1:1,40:31:41:0.976:2	0/1:0,12:30:12:1.00:2	0/1:0,97:30:97:1.00:2	0/1:0,84:30:84:1.00:2	0/1:40,44:30:84:0.524:2	0/1:34,34:29:68:0.500:2	0/1:52,42:31:94:0.447:2	0/1:44,35:31:79:0.443:2	0/1:0,72:30:72:1.00:2	0/1:55,66:30:122:0.545:2
chr16	4513718	rs140039309	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,34:32:74:0.459:2
chr16	4516199	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,4:32:55:0.073:2	./.	./.	./.	./.	./.	./.	./.
chr16	4516301	rs148220267	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:30:63:0.063:2	./.	./.
chr16	4519439	rs11557236	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,31:29:64:0.484:2	./.	0/1:24,24:30:48:0.500:2	./.	./.	./.	./.	./.
chr16	4524155	rs17137053	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,12:33:26:0.462:2
chr16	4556911	rs25685	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,23:32:63:0.365:2
chr16	4558202	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:32:180:0.022:2	./.	./.	./.	./.	./.
chr16	4606733	rs112579371	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,20:28:47:0.426:2
chr16	4625274	rs1256768	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,9:28:11:0.818:2	./.	0/1:0,25:29:25:1.00:2	0/1:14,5:26:19:0.263:2	./.	./.
chr16	4625470	rs77379438	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,7:31:18:0.389:2	0/1:9,10:31:19:0.526:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	4625938	rs2450386	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,10:29:14:0.714:2	./.	0/1:0,7:28:7:1.00:2	0/1:10,6:30:16:0.375:2	./.	./.
chr16	4626215	rs79448011	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,11:31:36:0.306:2	./.	./.	./.	./.	./.	./.	./.
chr16	4626523	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:31:119:0.034:2	./.
chr16	4649300	rs7195763	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,48:31:98:0.490:2
chr16	4674954	rs3747587	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,7:26:7:1.00:2	0/1:0,12:29:12:1.00:2	./.	0/1:0,13:28:13:1.00:2	0/1:0,21:27:21:1.00:2	0/1:0,20:27:20:1.00:2	0/1:0,14:26:14:1.00:2	./.	0/1:1,6:28:7:0.857:2	0/1:0,8:26:8:1.00:2	0/1:0,5:28:5:1.00:2
chr16	4721468	rs715109	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,22:32:49:0.449:2	0/1:11,8:31:19:0.421:2	0/1:0,10:34:10:1.00:2	0/1:28,22:32:50:0.440:2	./.	0/1:0,65:32:65:1.00:2	0/1:37,28:32:65:0.431:2	0/1:44,26:32:70:0.371:2	./.	0/1:29,26:31:55:0.473:2	./.
chr16	4736316	rs841225	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:4,6:30:10:0.600:2	0/1:4,7:32:11:0.636:2	./.	0/1:10,9:30:19:0.474:2	./.	0/1:0,12:30:12:1.00:2	0/1:8,3:29:11:0.273:2	./.	./.	0/1:2,3:32:5:0.600:2	./.
chr16	4748825	rs841214	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,8:32:13:0.615:2	0/1:4,3:32:7:0.429:2	./.	0/1:3,4:29:7:0.571:2	0/1:10,9:31:19:0.474:2	0/1:0,9:31:9:1.00:2	0/1:7,8:32:15:0.533:2	./.	./.	0/1:13,4:32:17:0.235:2	./.
chr16	4751045	rs863980	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,37:30:92:0.402:2	0/1:31,25:32:56:0.446:2	0/1:1,10:31:11:0.909:2	0/1:83,75:31:158:0.475:2	./.	0/1:0,132:31:133:1.00:2	0/1:102,85:31:187:0.455:2	0/1:91,89:31:180:0.494:2	./.	0/1:79,68:31:148:0.463:2	./.
chr16	4752134	rs841210	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:1,5:28:6:0.833:2	./.	0/1:7,4:26:11:0.364:2	./.	0/1:0,11:26:11:1.00:2	0/1:6,6:28:12:0.500:2	./.	./.	0/1:4,5:27:9:0.556:2	./.
chr16	4790204	rs61731839	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,15:33:25:0.600:2	./.	./.	./.	./.	./.	./.
chr16	4790273	rs859305	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,25:31:39:0.641:2	0/1:11,11:32:22:0.500:2	0/1:0,3:30:3:1.00:2	0/1:27,25:31:52:0.481:2	0/1:28,17:32:45:0.378:2	0/1:0,61:31:61:1.00:2	0/1:34,19:31:53:0.358:2	0/1:40,22:31:62:0.355:2	./.	0/1:37,37:33:74:0.500:2	./.
chr16	4794873	rs2075469	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,16:32:39:0.410:2	0/1:11,11:32:22:0.500:2	0/1:0,9:32:9:1.00:2	0/1:20,40:33:60:0.667:2	0/1:62,51:32:113:0.451:2	0/1:0,52:32:52:1.00:2	0/1:36,28:33:64:0.438:2	0/1:50,36:32:86:0.419:2	./.	0/1:23,23:32:46:0.500:2	./.
chr16	4796393	rs737700	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,26:28:52:0.500:2	0/1:16,11:28:27:0.407:2	0/1:0,8:29:8:1.00:2	0/1:32,37:29:69:0.536:2	0/1:29,24:28:53:0.453:2	0/1:4,78:29:82:0.951:2	0/1:30,43:30:73:0.589:2	0/1:56,40:29:96:0.417:2	./.	0/1:25,22:29:47:0.468:2	./.
chr16	4796399	rs61746912	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,22:32:63:0.349:2	./.	./.
chr16	4797457	rs17853375	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,30:31:50:0.600:2	0/1:12,19:32:31:0.613:2	0/1:0,7:31:7:1.00:2	0/1:31,28:31:59:0.475:2	0/1:45,26:31:71:0.366:2	0/1:0,78:31:79:1.00:2	0/1:31,52:31:83:0.627:2	0/1:19,50:32:69:0.725:2	./.	0/1:20,20:32:40:0.500:2	./.
chr16	4802386	rs3747602	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:4,5:31:9:0.556:2	./.	./.	0/1:5,4:32:9:0.444:2	./.	0/1:0,8:28:8:1.00:2	0/1:1,7:32:8:0.875:2	0/1:2,7:31:9:0.778:2	./.	./.	./.
chr16	4810584	rs142352672	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,45:32:93:0.484:2	./.	./.	./.	./.	./.	./.
chr16	4815602	rs12919587	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:41,51:32:92:0.554:2	0/1:34,15:32:49:0.306:2	./.	0/1:71,45:33:116:0.388:2	0/1:51,41:31:92:0.446:2	0/1:0,95:32:95:1.00:2	0/1:0,63:32:63:1.00:2	0/1:1,67:33:68:0.985:2	0/1:48,44:33:92:0.478:2	0/1:48,39:32:87:0.448:2	0/1:38,32:31:70:0.457:2
chr16	4815608	rs4786549	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:30:82:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,101:30:101:1.00:2	0/1:0,82:30:82:1.00:2	0/1:0,94:30:94:1.00:2	0/1:0,58:31:58:1.00:2	0/1:1,64:31:65:0.985:2	0/1:0,84:31:84:1.00:2	0/1:1,86:30:87:0.989:2	0/1:0,57:31:57:1.00:2
chr16	4833728	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,4:32:72:0.056:2	./.	./.	./.	./.	./.	./.	./.
chr16	4833970	rs759991	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:39,27:28:66:0.409:2	0/1:21,13:30:34:0.382:2	0/1:0,2:31:2:1.00:2	./.	./.	./.	0/1:1,133:29:134:0.993:2	./.	0/1:55,28:30:83:0.337:2	./.	0/1:48,24:30:72:0.333:2
chr16	4833985	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:31:134:0.030:2	./.	./.	./.	./.	./.
chr16	4837545	rs9673735	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:26,27:31:53:0.509:2	0/1:12,18:31:30:0.600:2	0/1:0,12:31:12:1.00:2	./.	./.	./.	0/1:0,118:31:118:1.00:2	./.	0/1:34,42:31:76:0.553:2	./.	0/1:33,33:31:66:0.500:2
chr16	4847446	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,70:29:147:0.476:2	./.	./.	./.
chr16	4847524	rs1982515	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:33:53:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,8:32:8:1.00:2	0/1:40,35:32:75:0.467:2	0/1:52,49:32:101:0.485:2	./.	0/1:1,75:32:76:0.987:2	0/1:41,40:33:81:0.494:2	0/1:46,30:34:76:0.395:2	./.	0/1:50,39:33:89:0.438:2
chr16	4849705	rs11553876	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:34,25:33:59:0.424:2	0/1:16,19:32:35:0.543:2	0/1:0,2:32:2:1.00:2	./.	./.	./.	0/1:63,41:31:104:0.394:2	./.	0/1:44,39:33:83:0.470:2	./.	./.
chr16	4855279	rs8064024	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:29:28:1.00:2	0/1:0,20:28:20:1.00:2	0/1:0,4:28:4:1.00:2	0/1:17,9:28:26:0.346:2	./.	./.	0/1:1,43:29:44:0.977:2	0/1:38,25:28:63:0.397:2	0/1:29,23:29:52:0.442:2	0/1:13,15:29:28:0.536:2	0/1:29,17:26:46:0.370:2
chr16	4861640	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:32:88:0.045:2	./.	./.	./.	./.
chr16	4861696	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:33:136:0.029:2	./.	./.	./.	./.
chr16	4861709	rs2085329	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:33:37:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,132:32:132:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,142:33:142:1.00:2	0/1:0,109:32:109:1.00:2	0/1:0,83:33:83:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,74:33:74:1.00:2
chr16	4871598	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:32:75:0.053:2	./.
chr16	4908667	rs3747614	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,27:31:50:0.540:2	0/1:18,17:32:35:0.486:2	0/1:0,10:32:10:1.00:2	0/1:45,39:32:84:0.464:2	./.	./.	0/1:47,37:32:84:0.440:2	./.	0/1:61,32:32:93:0.344:2	./.	./.
chr16	4920335	rs35103368	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,45:33:91:0.495:2	./.	./.
chr16	4923091	rs2251666	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,71:33:131:0.542:2	0/1:48,30:32:78:0.385:2	0/1:16,5:32:21:0.238:2	0/1:79,81:33:160:0.506:2	0/1:80,73:32:153:0.477:2	./.	0/1:0,151:32:151:1.00:2	0/1:75,75:32:150:0.500:2	0/1:76,86:34:162:0.531:2	./.	0/1:104,78:33:182:0.429:2
chr16	4924334	rs143954303	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,20:31:51:0.392:2
chr16	4925291	rs17137364	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,14:33:38:0.368:2	./.
chr16	4930100	rs1876359	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,25:32:89:0.281:2	0/1:29,16:32:45:0.356:2	0/1:7,7:32:14:0.500:2	0/1:39,50:31:89:0.562:2	0/1:59,30:31:89:0.337:2	./.	0/1:2,85:31:87:0.977:2	0/1:64,57:31:121:0.471:2	0/1:70,46:33:116:0.397:2	./.	0/1:73,57:32:131:0.438:2
chr16	4933907	rs17137389	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,47:32:80:0.588:2	./.
chr16	4933939	rs2037912	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,29:31:74:0.392:2	0/1:34,15:32:49:0.306:2	0/1:10,7:32:17:0.412:2	0/1:53,41:32:94:0.436:2	0/1:49,27:31:76:0.355:2	0/1:1,75:31:76:0.987:2	./.	0/1:72,37:31:109:0.339:2	0/1:53,37:34:90:0.411:2	0/1:64,34:32:98:0.347:2	0/1:64,46:33:110:0.418:2
chr16	4934549	rs1049208	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,15:31:33:0.469:2	0/1:13,9:29:22:0.409:2	./.	0/1:14,41:30:56:0.745:2	0/1:30,28:29:58:0.483:2	0/1:3,61:30:64:0.953:2	./.	0/1:26,21:30:47:0.447:2	0/1:24,23:30:47:0.489:2	0/1:16,9:31:25:0.360:2	0/1:17,19:30:36:0.528:2
chr16	4934564	rs1049207	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,21:30:49:0.429:2	0/1:19,11:32:30:0.367:2	./.	0/1:29,51:31:80:0.638:2	0/1:35,36:32:71:0.507:2	0/1:3,80:32:83:0.964:2	./.	0/1:44,27:31:71:0.380:2	0/1:35,22:33:57:0.386:2	0/1:25,18:33:43:0.419:2	0/1:27,31:32:58:0.534:2
chr16	4934777	rs61744951	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,72:31:173:0.416:2	./.
chr16	4935061	rs12446946	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,20:32:37:0.541:2	./.	./.	./.	./.
chr16	4935146	rs1049206	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,30:29:81:0.370:2	0/1:34,19:31:53:0.358:2	0/1:9,6:26:15:0.400:2	0/1:69,60:29:129:0.465:2	0/1:84,80:29:164:0.488:2	./.	0/1:3,181:29:184:0.984:2	./.	0/1:84,59:30:143:0.413:2	./.	0/1:30,50:29:80:0.625:2
chr16	4935256	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:27:54:0.074:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	4935636	rs2075639	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,38:31:91:0.418:2	./.	./.	./.	./.	./.	./.
chr16	4935659	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,4:32:94:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr16	4935985	rs35869286	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,23:32:48:0.479:2	./.
chr16	4938160	rs2734742	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:33:79:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,18:33:18:1.00:2	0/1:1,110:33:111:0.991:2	0/1:0,92:32:92:1.00:2	0/1:0,94:33:94:1.00:2	0/1:0,108:32:108:1.00:2	0/1:1,121:32:122:0.992:2	0/1:0,115:33:115:1.00:2	0/1:3,94:33:97:0.969:2	0/1:2,90:32:92:0.978:2
chr16	4940809	rs2471844	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,66:32:66:1.00:2	0/1:1,26:31:27:0.963:2	./.	0/1:2,55:32:57:0.965:2	0/1:0,39:31:39:1.00:2	0/1:0,58:31:58:1.00:2	0/1:1,24:32:25:0.960:2	0/1:0,45:31:45:1.00:2	0/1:0,24:33:24:1.00:2	0/1:2,32:33:34:0.941:2	0/1:1,15:32:16:0.938:2
chr16	4940858	rs374905578	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:32:57:0.070:2	./.	./.	./.	./.
chr16	4940902	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:31:90:0.044:2	./.	./.	./.	./.
chr16	4941818	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,10:31:30:0.333:2	./.
chr16	4942099	rs1049205	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,29:32:64:0.453:2	0/1:17,18:32:35:0.514:2	./.	0/1:35,34:32:69:0.493:2	0/1:49,62:32:111:0.559:2	0/1:0,94:32:94:1.00:2	./.	0/1:70,64:32:134:0.478:2	0/1:53,47:33:100:0.470:2	0/1:53,38:33:91:0.418:2	0/1:38,29:32:67:0.433:2
chr16	4944518	rs1876363	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:32:35:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,49:32:49:1.00:2
chr16	4945687	rs35340520	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,64:31:117:0.547:2	./.	./.	./.
chr16	4947748	rs61734748	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,55:29:118:0.466:2	./.	./.	./.	./.	./.	./.
chr16	4952491	rs372841654	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,31:31:76:0.408:2	0/1:31,15:31:46:0.326:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	5050720	rs111249494	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,16:32:38:0.421:2	./.
chr16	5050897	rs2286966	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,27:33:58:0.466:2	0/1:13,6:32:19:0.316:2	./.	0/1:29,29:31:58:0.500:2	0/1:36,39:33:75:0.520:2	0/1:37,34:32:71:0.479:2	0/1:2,76:33:78:0.974:2	0/1:41,39:32:80:0.488:2	0/1:32,20:33:52:0.385:2	./.	0/1:0,40:33:40:1.00:2
chr16	5061113	rs116849014	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:31:15:0.400:2	./.	./.	./.	./.	0/1:24,31:31:55:0.564:2	./.	./.	./.
chr16	5061230	rs201054737	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,34:29:61:0.557:2	./.	./.	./.	./.	./.	./.
chr16	5064917	rs2012649	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,18:29:19:0.947:2	0/1:0,13:30:13:1.00:2	./.	0/1:0,33:28:33:1.00:2	./.	./.	0/1:14,14:26:28:0.500:2	./.	0/1:6,8:31:14:0.571:2	./.	./.
chr16	5075484	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,18:27:31:0.581:2	./.	./.	./.	./.
chr16	5075542	rs887854	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,113:31:113:1.00:2	0/1:0,74:30:74:1.00:2	0/1:0,96:31:97:1.00:2	0/1:61,48:31:110:0.440:2	0/1:37,35:30:72:0.486:2	0/1:0,51:30:51:1.00:2	./.
chr16	5075633	rs7188856	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,73:31:75:0.973:2	0/1:0,50:32:50:1.00:2	0/1:0,12:31:12:1.00:2	0/1:2,88:31:90:0.978:2	./.	./.	./.	0/1:80,81:31:161:0.503:2	0/1:59,63:32:122:0.516:2	./.	0/1:0,105:31:105:1.00:2
chr16	5078114	rs368896775	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,23:29:46:0.500:2	./.	./.	./.	./.	./.
chr16	5097947	rs1127920	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:32:28:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,2:33:2:1.00:2	0/1:10,19:32:29:0.655:2	0/1:17,6:33:23:0.261:2	./.	./.	./.	./.	0/1:21,18:31:39:0.462:2	0/1:24,20:32:44:0.455:2
chr16	5106184	rs741164	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:31:96:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,17:31:17:1.00:2	0/1:66,68:31:134:0.507:2	0/1:0,116:31:116:1.00:2	0/1:68,66:30:134:0.493:2	0/1:1,104:30:105:0.990:2	0/1:2,118:30:120:0.983:2	./.	./.	0/1:67,72:31:139:0.518:2
chr16	5122000	rs144380244	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,23:30:58:0.397:2
chr16	5128817	rs17849848	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,38:30:61:0.623:2	./.	./.	./.	./.	./.	./.	./.
chr16	5128857	rs12921879	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,9:28:21:0.429:2	./.	./.	./.	./.	./.	./.
chr16	5135726	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,9:31:120:0.075:2	./.	./.	./.	./.
chr16	5135727	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,8:30:123:0.065:2	./.	./.	./.	./.
chr16	5140445	rs201113028	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,5:32:181:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	5140561	rs9673770	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,49:31:118:0.415:2	./.	./.	./.	./.	./.	0/1:52,49:32:101:0.485:2	./.
chr16	5143572	rs35574184	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,63:32:113:0.558:2	./.	./.	./.	./.	./.	./.	./.
chr16	5145474	rs7192650	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,111:31:112:0.991:2	0/1:34,40:30:74:0.541:2	./.	./.	0/1:63,65:31:128:0.508:2	./.	0/1:60,49:31:109:0.450:2	./.
chr16	7726757	rs2302213	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,91:28:197:0.462:2	./.	./.	./.	./.
chr16	7759136	rs79369633	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,65:30:124:0.524:2	./.	./.	./.	./.	./.	./.	./.
chr16	8619889	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:30:62:0.065:2	./.	./.	./.	./.	./.
chr16	8722629	rs2270286	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,30:30:59:0.508:2	./.	0/1:52,29:32:81:0.358:2	./.	0/1:39,27:32:66:0.409:2
chr16	8728953	rs1731044	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,188:32:188:1.00:2	0/1:0,135:32:135:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,179:32:179:1.00:2	0/1:0,192:32:192:1.00:2	0/1:0,194:32:194:1.00:2	0/1:0,189:32:189:1.00:2	0/1:1,186:32:187:0.995:2	0/1:0,188:33:188:1.00:2	0/1:0,183:32:183:1.00:2	0/1:0,190:32:190:1.00:2
chr16	8729124	rs2302607	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:19,13:30:32:0.406:2	0/1:10,11:30:21:0.524:2	./.	0/1:24,14:29:38:0.368:2	./.	0/1:17,20:31:37:0.541:2	0/1:10,27:30:38:0.730:2	./.	./.	0/1:12,13:30:25:0.520:2	./.
chr16	8736028	rs1614616	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,120:33:120:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,125:32:125:1.00:2	0/1:0,152:32:152:1.00:2	0/1:0,127:32:127:1.00:2	0/1:1,169:32:170:0.994:2	0/1:0,146:33:146:1.00:2	0/1:0,113:33:113:1.00:2	0/1:0,141:32:141:1.00:2
chr16	8736032	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:33:180:0.022:2	./.	./.	./.
chr16	8738427	rs1641066	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,154:32:154:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,177:33:177:1.00:2	0/1:0,179:32:179:1.00:2	0/1:0,182:32:182:1.00:2	0/1:0,177:32:177:1.00:2	0/1:0,183:32:183:1.00:2	0/1:0,175:33:175:1.00:2	0/1:0,183:32:183:1.00:2	0/1:0,180:32:180:1.00:2
chr16	8738499	rs1731000	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,129:31:129:1.00:2	0/1:0,84:31:84:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,160:31:160:1.00:2	0/1:0,175:30:175:1.00:2	0/1:0,148:30:148:1.00:2	0/1:0,150:31:150:1.00:2	0/1:0,160:31:160:1.00:2	0/1:0,137:32:138:1.00:2	0/1:0,97:31:97:1.00:2	0/1:0,116:31:116:1.00:2
chr16	8738579	rs1641067	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,63:33:63:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,49:32:49:1.00:2
chr16	8739954	rs1641070	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,149:31:149:1.00:2	0/1:0,123:31:123:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,129:31:129:1.00:2	0/1:0,132:30:133:1.00:2	0/1:0,147:30:147:1.00:2	0/1:0,127:31:127:1.00:2	0/1:0,146:31:146:1.00:2	0/1:0,149:32:149:1.00:2	0/1:0,157:31:157:1.00:2	0/1:0,155:32:155:1.00:2
chr16	8740015	rs1730994	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,71:32:72:0.986:2	0/1:0,70:33:70:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,88:33:88:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,69:32:70:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,90:33:90:1.00:2	0/1:0,68:33:68:1.00:2	0/1:0,96:33:96:1.00:2
chr16	8839954	rs1731017	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:20,12:32:32:0.375:2	0/1:10,7:29:17:0.412:2	0/1:0,8:29:8:1.00:2	./.	0/1:0,36:30:36:1.00:2	0/1:25,25:29:50:0.500:2	0/1:20,22:30:42:0.524:2	0/1:17,31:31:48:0.646:2	0/1:24,23:32:47:0.489:2	0/1:0,42:31:42:1.00:2	0/1:37,42:31:79:0.532:2
chr16	8841960	rs1641010	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:45,28:29:74:0.384:2	0/1:32,12:30:44:0.273:2	0/1:0,6:29:6:1.00:2	./.	0/1:0,44:31:44:1.00:2	0/1:36,51:31:87:0.586:2	0/1:43,25:31:68:0.368:2	0/1:51,29:30:80:0.363:2	0/1:60,49:31:109:0.450:2	0/1:0,83:31:83:1.00:2	0/1:51,48:30:99:0.485:2
chr16	8844389	rs2229157	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,30:30:67:0.448:2	0/1:22,24:30:46:0.522:2	./.	./.	./.	./.	./.	./.	0/1:55,48:33:103:0.466:2	./.	./.
chr16	8866775	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:31:109:0.037:2	./.	./.	./.	./.
chr16	8868776	rs1641022	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,21:28:52:0.404:2	0/1:17,13:30:30:0.433:2	0/1:8,8:28:16:0.500:2	0/1:30,31:28:61:0.508:2	0/1:32,24:28:56:0.429:2	0/1:0,67:28:67:1.00:2	0/1:27,46:28:73:0.630:2	0/1:36,33:27:69:0.478:2	0/1:33,30:28:63:0.476:2	./.	./.
chr16	8868799	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,4:30:85:0.047:2	./.	./.	./.	./.	./.	./.	./.
chr16	8900241	rs62031146	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,7:33:20:0.350:2	./.	./.	./.
chr16	8904955	rs191295403	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,26:32:65:0.400:2	./.	./.	./.	./.
chr16	8952248	rs988065	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:32:19:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,64:32:64:1.00:2	0/1:1,60:31:61:0.984:2	0/1:0,49:33:49:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,39:32:39:1.00:2
chr16	8953081	rs8097	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,35:29:71:0.493:2	0/1:15,23:29:38:0.605:2	0/1:0,10:30:10:1.00:2	0/1:41,41:30:82:0.500:2	0/1:33,33:29:66:0.500:2	0/1:0,92:30:92:1.00:2	0/1:25,13:29:38:0.342:2	0/1:0,63:29:63:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,62:29:62:1.00:2	./.
chr16	9857228	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:32:155:0.026:2	./.	./.	./.	./.
chr16	9857440	rs370754278	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,11:32:25:0.440:2
chr16	9857777	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:33:179:0.022:2	./.	./.
chr16	9858502	rs61731465	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,31:32:91:0.344:2	./.	./.	./.	./.	./.	./.
chr16	9858539	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:33:96:0.042:2	./.
chr16	9916204	rs9806806	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:107,60:33:167:0.359:2	0/1:58,60:33:118:0.508:2	0/1:13,15:31:28:0.536:2	0/1:103,76:33:179:0.425:2	./.	./.	./.	0/1:2,175:33:177:0.989:2	./.	0/1:4,165:33:169:0.976:2	./.
chr16	9943666	rs2229193	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:76,65:30:141:0.461:2	0/1:63,42:31:105:0.400:2	0/1:17,6:30:23:0.261:2	0/1:86,98:30:184:0.533:2	./.	./.	0/1:75,79:29:154:0.513:2	0/1:3,142:29:146:0.979:2	0/1:79,71:30:150:0.473:2	0/1:1,155:30:156:0.994:2	0/1:85,87:29:172:0.506:2
chr16	10524957	rs34430103	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,123:30:124:0.992:2	./.	./.	0/1:51,83:31:134:0.619:2	0/1:53,57:30:110:0.518:2	./.
chr16	10525230	rs34404959	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,98:29:98:1.00:2	./.	./.	0/1:79,52:30:131:0.397:2	0/1:62,50:29:112:0.446:2	./.
chr16	10527400	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:31:95:0.042:2	./.	./.
chr16	10567768	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,10:10:30:0.333:2	./.	./.
chr16	10574767	rs146194908	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,23:31:48:0.479:2	0/1:8,14:32:22:0.636:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	10574796	rs9932051	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,15:30:28:0.556:2	./.
chr16	10574813	rs9931441	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,12:30:24:0.500:2	./.
chr16	10574829	rs12596111	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:31:3:0.667:2	0/1:5,10:32:15:0.667:2	0/1:0,17:30:17:1.00:2	./.	0/1:4,3:31:7:0.429:2	0/1:11,4:33:15:0.267:2	0/1:10,10:31:20:0.500:2	./.	0/1:12,5:32:17:0.294:2
chr16	10575824	rs1970817	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:32:10:0.400:2	0/1:39,29:31:68:0.426:2	0/1:0,43:32:43:1.00:2	./.	0/1:27,23:33:50:0.460:2	0/1:44,25:32:69:0.362:2	0/1:28,32:33:60:0.533:2	./.	0/1:40,33:32:73:0.452:2
chr16	10631912	rs2279868	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:33:7:0.429:2	./.	./.	0/1:50,38:31:88:0.432:2	./.	./.	./.	./.	./.
chr16	10721589	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,82:32:162:0.506:2	./.	./.	./.	./.	./.	./.
chr16	10769958	rs2719710	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,63:29:63:1.00:2	0/1:1,29:28:30:0.967:2	./.	0/1:0,89:29:89:1.00:2	0/1:50,64:30:114:0.561:2	0/1:1,99:28:100:0.990:2	0/1:83,47:30:130:0.362:2	./.	./.	0/1:0,75:30:75:1.00:2	./.
chr16	10775855	rs12918646	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:83,57:32:140:0.407:2	0/1:40,47:31:87:0.540:2	./.	0/1:5,170:31:175:0.971:2	0/1:118,77:31:195:0.395:2	./.	0/1:119,75:31:194:0.387:2	./.	./.	0/1:95,65:32:160:0.406:2	./.
chr16	10788406	rs9922129	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,20:31:30:0.667:2	0/1:9,9:31:18:0.500:2	./.	0/1:0,34:32:34:1.00:2	0/1:12,17:30:29:0.586:2	./.	0/1:2,12:30:14:0.857:2	./.	./.	0/1:9,19:32:28:0.679:2	./.
chr16	10862964	rs11716	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:24,28:32:52:0.538:2	0/1:14,17:30:31:0.548:2	./.	0/1:1,64:33:65:0.985:2	./.	./.	0/1:0,48:33:48:1.00:2	./.	./.	./.	./.
chr16	10995933	rs8046121	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:32:22:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,2:27:2:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,41:31:42:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,36:31:36:1.00:2
chr16	11000848	rs4774	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:18,14:32:32:0.438:2	0/1:12,8:32:20:0.400:2	0/1:3,3:33:6:0.500:2	./.	0/1:25,24:30:49:0.490:2	./.	./.	./.	./.	0/1:1,39:32:40:0.975:2	./.
chr16	11001421	rs78108426	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	11001691	rs13330686	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,8:32:8:1.00:2	./.
chr16	11001694	rs13336804	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,8:27:8:1.00:2	./.
chr16	11001743	rs2229320	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,4:33:5:0.800:2	./.	./.	0/1:0,3:31:3:1.00:2	0/1:1,2:31:3:0.667:2	0/1:5,3:30:8:0.375:2	./.	./.	0/1:0,6:31:6:1.00:2	./.	./.
chr16	11001770	rs34654419	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	11001821	rs45621432	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:11,11:32:22:0.500:2	0/1:5,4:32:9:0.444:2	./.	0/1:9,8:31:17:0.471:2	./.	./.	0/1:22,5:30:27:0.185:2	./.	./.	./.	./.
chr16	11001914	rs2229321	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,76:33:76:1.00:2	./.
chr16	11002904	rs2228238	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,26:32:79:0.329:2	0/1:22,22:31:44:0.500:2	0/1:8,5:32:13:0.385:2	0/1:0,100:32:100:1.00:2	0/1:44,52:32:96:0.542:2	0/1:0,84:31:84:1.00:2	0/1:1,93:32:94:0.989:2	0/1:1,135:32:136:0.993:2	0/1:1,86:33:87:0.989:2	./.	0/1:0,82:32:82:1.00:2
chr16	11002927	rs7197779	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:29:86:1.00:2	0/1:0,56:28:56:1.00:2	0/1:0,13:28:13:1.00:2	0/1:0,123:29:123:1.00:2	0/1:0,116:28:116:1.00:2	0/1:0,110:28:110:1.00:2	0/1:0,125:29:125:1.00:2	0/1:1,143:29:144:0.993:2	0/1:0,112:30:112:1.00:2	0/1:0,87:29:87:1.00:2	0/1:0,93:28:93:1.00:2
chr16	11003010	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:33:133:0.030:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	11016045	rs2229322	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,74:31:144:0.514:2	./.	0/1:49,31:32:80:0.388:2	./.
chr16	11056378	rs16957839	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,97:32:172:0.564:2	0/1:52,49:32:101:0.485:2	./.	./.	./.	0/1:96,100:31:196:0.510:2	./.	./.	0/1:88,100:32:188:0.532:2	./.	0/1:104,84:31:188:0.447:2
chr16	11063068	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:30:78:0.051:2	./.	./.	./.
chr16	11076816	rs199955538	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,45:32:96:0.469:2	./.	./.
chr16	11154770	rs2286973	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:28,25:28:53:0.472:2	0/1:19,13:30:32:0.406:2	./.	./.	0/1:52,41:29:93:0.441:2	0/1:38,41:28:79:0.519:2	./.	0/1:78,56:28:134:0.418:2	0/1:54,39:29:93:0.419:2	0/1:28,26:28:54:0.481:2	0/1:1,81:29:82:0.988:2
chr16	11348712	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:33:57:0.070:2	./.	./.
chr16	11349142	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	11361895	rs8043625	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,17:33:17:1.00:2	./.	0/1:0,133:32:133:1.00:2	0/1:110,61:32:171:0.357:2	0/1:102,69:33:171:0.404:2	0/1:0,154:33:154:1.00:2	0/1:99,86:34:186:0.465:2	0/1:3,97:32:100:0.970:2	0/1:74,72:33:146:0.493:2
chr16	11362729	rs11640138	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:30:9:1.00:2	./.	0/1:0,47:31:47:1.00:2	0/1:18,29:31:47:0.617:2	0/1:17,20:31:37:0.541:2	0/1:0,61:31:61:1.00:2	0/1:29,26:31:55:0.473:2	0/1:1,41:31:42:0.976:2	0/1:29,34:32:63:0.540:2
chr16	11362819	rs34904070	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,100:32:198:0.505:2	./.	./.	./.	./.	./.	./.
chr16	11362959	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:32:169:0.024:2	./.	./.	./.	./.	./.
chr16	11363003	rs71383203	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,44:31:100:0.440:2	./.	./.	./.	./.	./.
chr16	11367143	rs438289	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:32:87:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,83:31:83:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,98:31:98:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,85:31:85:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,98:31:98:1.00:2	0/1:0,49:30:49:1.00:2
chr16	11367154	rs429744	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:31:87:1.00:2	0/1:0,38:32:38:1.00:2	0/1:5,4:32:9:0.444:2	0/1:2,78:31:80:0.975:2	0/1:17,17:30:34:0.500:2	0/1:0,93:31:93:1.00:2	0/1:0,43:31:43:1.00:2	0/1:1,81:31:82:0.988:2	0/1:0,64:32:64:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,48:31:48:1.00:2
chr16	11367195	rs35598356	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,8:31:18:0.471:2	0/1:38,22:32:60:0.367:2	./.	./.	0/1:2,27:32:29:0.931:2	0/1:36,25:32:61:0.410:2	0/1:17,10:33:27:0.370:2
chr16	11374866	rs737008	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,88:32:89:0.989:2	0/1:1,66:32:67:0.985:2	0/1:1,14:29:15:0.933:2	./.	0/1:0,93:32:93:1.00:2	0/1:0,130:31:130:1.00:2	0/1:45,40:32:85:0.471:2	0/1:1,146:31:148:0.993:2	0/1:66,51:33:117:0.436:2	0/1:0,102:31:102:1.00:2	0/1:57,65:32:122:0.533:2
chr16	11444572	rs7204628	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,23:28:55:0.418:2	./.	0/1:42,26:30:68:0.382:2	0/1:53,50:30:103:0.485:2	./.	0/1:31,39:30:70:0.557:2	./.
chr16	11647492	rs4280262	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:37,28:33:65:0.431:2	0/1:32,17:32:49:0.347:2	./.	0/1:69,52:32:121:0.430:2	./.	0/1:90,52:32:142:0.366:2	./.	./.	./.	0/1:48,45:32:93:0.484:2	./.
chr16	11769948	rs1050068	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:17,20:27:37:0.541:2	0/1:14,12:30:26:0.462:2	0/1:0,3:30:3:1.00:2	./.	0/1:27,24:27:51:0.471:2	./.	./.	0/1:25,15:28:40:0.375:2	0/1:23,17:27:40:0.425:2	0/1:22,26:27:48:0.542:2	0/1:1,34:27:35:0.971:2
chr16	11769963	rs1050069	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:20,20:32:40:0.500:2	0/1:16,15:32:31:0.484:2	0/1:0,4:29:4:1.00:2	./.	0/1:31,25:31:56:0.446:2	./.	./.	0/1:32,20:31:52:0.385:2	0/1:26,19:32:45:0.422:2	0/1:26,29:31:55:0.527:2	0/1:0,39:30:39:1.00:2
chr16	11770777	rs7194034	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,48:30:114:0.421:2	0/1:27,45:29:72:0.625:2	0/1:0,27:29:27:1.00:2	0/1:70,85:30:155:0.548:2	0/1:56,54:29:110:0.491:2	./.	./.	0/1:85,61:29:146:0.418:2	0/1:55,64:31:119:0.538:2	0/1:69,48:29:117:0.410:2	0/1:4,152:29:156:0.974:2
chr16	11771094	rs7198518	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:92,93:32:185:0.503:2	0/1:79,64:32:143:0.448:2	0/1:0,22:33:22:1.00:2	0/1:108,84:33:192:0.438:2	0/1:112,54:32:166:0.325:2	./.	./.	0/1:113,81:32:194:0.418:2	0/1:108,82:33:190:0.432:2	0/1:98,97:32:195:0.497:2	0/1:1,186:32:188:0.995:2
chr16	11771353	rs8191335	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,19:32:32:0.594:2	0/1:6,7:32:13:0.538:2	0/1:0,5:31:5:1.00:2	0/1:12,14:31:26:0.538:2	0/1:17,20:30:37:0.541:2	./.	./.	0/1:16,12:32:28:0.429:2	0/1:6,10:33:16:0.625:2	0/1:9,9:30:18:0.500:2	0/1:0,35:32:35:1.00:2
chr16	11771471	rs1050048	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,20:32:48:0.417:2	./.	./.	./.
chr16	11771706	rs1050049	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,5:25:6:0.833:2	./.	./.	./.	./.	0/1:25,33:27:58:0.569:2	./.	./.	./.
chr16	11772213	rs1802408	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,58:29:125:0.464:2	./.	./.	./.	./.	./.	./.	./.
chr16	11772230	rs1802409	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,63:31:134:0.470:2	./.	./.	./.	./.	./.	./.	./.
chr16	11772239	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:129:0.031:2	./.
chr16	11773662	rs3190321	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,25:32:75:0.333:2	0/1:23,24:32:47:0.511:2	0/1:0,9:33:9:1.00:2	0/1:54,36:32:91:0.400:2	0/1:51,36:31:87:0.414:2	./.	./.	0/1:80,44:32:124:0.355:2	0/1:61,39:32:100:0.390:2	0/1:65,35:32:100:0.350:2	0/1:1,94:32:95:0.989:2
chr16	11852354	rs8743	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,15:32:37:0.405:2	0/1:14,13:33:27:0.481:2	0/1:5,4:33:9:0.444:2	0/1:26,17:33:43:0.395:2	0/1:20,8:32:28:0.286:2	0/1:19,23:32:42:0.548:2	./.	./.	0/1:14,17:33:31:0.548:2	0/1:39,20:32:59:0.339:2	./.
chr16	11864756	rs150823676	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,34:30:76:0.447:2	./.	./.	./.
chr16	11873158	rs16958654	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,63:29:124:0.508:2	./.	0/1:77,36:29:113:0.319:2	./.	./.	./.	./.	./.
chr16	11876203	rs1429077	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,49:32:116:0.422:2	./.	0/1:50,52:32:102:0.510:2	./.	./.	./.	./.	./.
chr16	11940390	rs8052900	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,49:30:50:0.980:2	0/1:1,31:28:32:0.969:2	0/1:2,5:29:7:0.714:2	0/1:0,84:30:84:1.00:2	0/1:26,18:30:44:0.409:2	0/1:2,57:30:59:0.966:2	0/1:13,31:30:44:0.705:2	./.	0/1:0,85:31:85:1.00:2	0/1:29,43:30:72:0.597:2	0/1:57,33:29:90:0.367:2
chr16	11969724	rs33657	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:126,4:33:130:0.031:2	0/1:21,8:33:29:0.276:2	./.	0/1:69,59:33:128:0.461:2	0/1:91,96:32:187:0.513:2	0/1:88,51:33:139:0.367:2	0/1:0,178:32:178:1.00:2	./.	0/1:114,67:33:181:0.370:2	0/1:0,178:33:178:1.00:2
chr16	11981487	rs3752426	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,88:31:89:0.989:2	0/1:1,35:31:36:0.972:2	0/1:17,3:31:20:0.150:2	0/1:73,51:32:124:0.411:2	0/1:33,22:31:55:0.400:2	0/1:43,49:31:92:0.533:2	./.	./.	./.	0/1:67,43:31:111:0.391:2	./.
chr16	12009279	rs424518	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	./.	./.
chr16	12009304	rs11544193	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,6:32:6:1.00:2	0/1:0,6:30:6:1.00:2	./.	0/1:0,10:32:10:1.00:2	0/1:2,10:31:12:0.833:2	0/1:4,6:32:10:0.600:2	./.	./.	./.	0/1:1,3:33:4:0.750:2	./.
chr16	12060163	rs373496	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:32:86:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,98:33:98:1.00:2	0/1:0,75:33:76:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,119:34:119:1.00:2	0/1:1,87:33:88:0.989:2	0/1:0,127:33:127:1.00:2
chr16	12061626	rs2017662	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,27:33:73:0.370:2	./.	./.
chr16	12142470	rs36013478	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,41:30:106:0.387:2	./.	./.	./.	./.	./.	./.
chr16	12145769	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:32:65:0.062:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	12145796	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:33:185:0.022:2	./.
chr16	12145848	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:31:193:0.026:2	./.	./.	./.	./.
chr16	12145868	rs138572412	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,86:33:195:0.441:2	./.	./.
chr16	12145894	.	T	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:173,5:32:178:0.028:2	0/1:39,3:32:42:0.071:2	./.	0/1:186,8:32:194:0.041:2	./.	0/1:192,7:33:199:0.035:2	./.	./.	0/1:194,5:32:199:0.025:2	0/1:189,4:33:193:0.021:2
chr16	12145924	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:186,5:29:191:0.026:2	0/1:190,6:27:196:0.031:2	./.	./.	./.	./.	./.
chr16	12145952	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,4:33:196:0.020:2	./.	./.	./.	./.	./.	./.
chr16	12146045	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:134,4:30:138:0.029:2	./.	./.	./.	./.	./.	./.	0/1:133,4:33:137:0.029:2	./.	./.	0/1:120,4:30:124:0.032:2
chr16	12146065	rs145545344	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:90,5:31:95:0.053:2	./.	./.	./.	./.	./.	0/1:110,4:33:114:0.035:2
chr16	12162969	rs1641843	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,15:31:43:0.349:2	0/1:13,6:29:19:0.316:2	0/1:4,4:30:8:0.500:2	0/1:1,41:30:42:0.976:2	./.	./.	0/1:16,16:30:32:0.500:2	0/1:25,25:29:50:0.500:2	0/1:0,39:31:39:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,30:31:30:1.00:2
chr16	12662395	rs192670414	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,7:31:13:0.538:2	./.	./.	./.	./.
chr16	12662420	rs2288423	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:30:5:0.600:2	./.	./.	./.	./.	./.
chr16	12758966	rs1713480	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:33:37:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,5:32:5:1.00:2	0/1:2,48:32:50:0.960:2	0/1:1,38:32:39:0.974:2	0/1:0,34:32:34:1.00:2	0/1:0,43:33:43:1.00:2	0/1:0,60:32:60:1.00:2	0/1:2,39:33:41:0.951:2	0/1:0,44:32:44:1.00:2	0/1:0,51:32:51:1.00:2
chr16	12798778	rs149102231	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,24:31:54:0.444:2	./.	./.	./.	./.	./.
chr16	12897610	rs376927814	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,10:12:52:0.192:2	0/1:24,7:28:31:0.226:2	./.	0/1:71,19:18:90:0.211:2	0/1:69,18:16:87:0.207:2	0/1:56,15:14:71:0.211:2	0/1:58,15:15:73:0.205:2	0/1:96,24:18:120:0.200:2	0/1:63,21:13:84:0.250:2	0/1:65,11:21:76:0.145:2	0/1:59,16:15:76:0.213:2
chr16	13002359	rs9938751	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:31:39:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,41:30:41:1.00:2	0/1:34,22:30:56:0.393:2	0/1:16,22:30:38:0.579:2	0/1:30,27:30:57:0.474:2	0/1:37,30:31:67:0.448:2	0/1:0,36:31:36:1.00:2	0/1:0,32:30:32:1.00:2
chr16	14015932	rs3136056	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,39:30:82:0.476:2
chr16	14028081	rs1799802	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,10:32:20:0.500:2	./.	./.	./.	./.
chr16	14029033	rs1800067	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,7:32:17:0.412:2	0/1:47,28:31:75:0.373:2	0/1:35,25:30:60:0.417:2	./.	./.	./.	./.	0/1:36,34:32:70:0.486:2	./.
chr16	14041958	rs1799801	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:30:8:1.00:2	0/1:25,29:30:54:0.537:2	0/1:25,29:29:54:0.537:2	./.	0/1:35,22:30:57:0.386:2	./.	./.	0/1:19,27:29:46:0.587:2	0/1:34,17:30:51:0.333:2
chr16	14576553	rs183781022	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,46:32:123:0.374:2	./.	./.	./.	./.	./.	./.	./.
chr16	14742400	rs11546303	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,101:33:101:1.00:2	0/1:2,59:32:61:0.967:2	0/1:0,14:33:14:1.00:2	0/1:72,58:32:130:0.446:2	./.	./.	0/1:84,51:33:135:0.378:2	0/1:88,68:33:156:0.436:2	0/1:62,55:33:117:0.470:2	./.	0/1:80,45:32:125:0.360:2
chr16	14758857	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:33:162:0.025:2	./.
chr16	14784387	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,5:25:60:0.083:2	./.	./.	./.	./.	./.	0/1:63,10:21:73:0.137:2	./.
chr16	14958514	rs117835774	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,16:29:48:0.333:2	./.	./.	./.	./.	0/1:4,176:29:180:0.978:2	./.	./.	./.
chr16	14968960	.	G	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:187,8:28:196:0.041:2	0/1:188,9:29:197:0.046:2	./.	./.	0/1:192,5:28:197:0.025:2	./.	./.	./.
chr16	14969016	rs79100490	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,57:32:190:0.300:2	0/1:143,41:32:184:0.223:2
chr16	14972670	rs150370900	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,61:32:190:0.321:2	0/1:150,33:30:183:0.180:2
chr16	14983049	rs376397163	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,14:29:195:0.072:2	0/1:187,7:31:194:0.036:2
chr16	14988868	rs200932882	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:121,54:33:175:0.309:2	0/1:129,64:32:194:0.332:2	0/1:118,74:33:192:0.385:2	0/1:155,30:32:185:0.162:2	0/1:152,38:32:190:0.200:2	0/1:136,43:33:179:0.240:2	0/1:169,21:32:190:0.111:2	0/1:142,50:32:192:0.260:2	0/1:130,60:34:190:0.316:2	0/1:152,27:33:179:0.151:2	0/1:144,34:34:178:0.191:2
chr16	14989420	rs77101519	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:86,87:30:173:0.503:2	0/1:89,87:31:176:0.494:2	0/1:43,35:31:78:0.449:2	0/1:79,110:30:189:0.582:2	0/1:108,79:30:187:0.422:2	0/1:135,44:31:179:0.246:2	0/1:138,53:31:192:0.277:2	0/1:105,85:30:190:0.447:2	0/1:143,47:31:190:0.247:2	0/1:65,115:30:181:0.639:2	0/1:98,71:31:169:0.420:2
chr16	15069080	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.
chr16	15091601	rs28545123	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,27:30:74:0.380:2	./.	./.	0/1:27,34:30:65:0.557:2	./.	0/1:58,35:30:95:0.376:2	0/1:50,14:26:67:0.219:2	0/1:25,51:28:82:0.671:2
chr16	15095675	rs9921162	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,27:31:87:0.310:2	./.	./.	0/1:31,32:30:63:0.508:2	./.	0/1:74,34:32:108:0.315:2	0/1:40,20:30:60:0.333:2	0/1:28,61:31:91:0.685:2
chr16	15098047	rs11549900	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,32:32:107:0.299:2	./.	./.	0/1:31,37:33:68:0.544:2	./.	0/1:98,94:33:193:0.490:2	0/1:60,27:31:88:0.310:2	0/1:52,92:33:145:0.639:2
chr16	15103526	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:32:123:0.033:2	./.	./.	./.	./.
chr16	15110077	rs4262938	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,61:32:119:0.513:2	0/1:50,33:32:83:0.398:2	0/1:11,12:31:23:0.522:2	0/1:54,98:31:152:0.645:2	0/1:80,58:32:138:0.420:2	0/1:150,33:32:183:0.180:2	./.	0/1:90,79:32:169:0.467:2	0/1:142,43:33:185:0.232:2	0/1:60,36:32:96:0.375:2	0/1:78,37:32:115:0.322:2
chr16	15111218	rs4985162	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,24:33:96:0.250:2	./.	./.	0/1:49,82:32:131:0.626:2	./.	0/1:87,49:34:136:0.360:2	0/1:59,27:33:86:0.314:2	0/1:28,74:33:102:0.725:2
chr16	15116625	rs1058637	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,19:32:48:0.396:2	0/1:17,10:32:27:0.370:2	0/1:3,3:31:6:0.500:2	0/1:10,24:31:34:0.706:2	0/1:35,13:31:48:0.271:2	0/1:38,7:30:45:0.156:2	0/1:0,8:33:8:1.00:2	0/1:36,13:31:49:0.265:2	0/1:1,45:33:46:0.978:2	0/1:17,22:32:39:0.564:2	0/1:0,48:31:48:1.00:2
chr16	15122751	rs117411702	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,6:28:50:0.120:2	./.	./.	0/1:95,12:33:107:0.112:2	./.	./.	0/1:132,12:33:144:0.083:2	0/1:109,10:34:119:0.084:2	0/1:86,10:31:96:0.104:2	0/1:87,5:30:92:0.054:2
chr16	15122780	.	G	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:69,3:34:72:0.042:2	0/1:35,4:32:39:0.103:2	./.	./.	0/1:73,11:34:84:0.131:2	0/1:84,10:34:94:0.106:2	0/1:65,8:34:73:0.110:2	0/1:104,9:31:113:0.080:2	0/1:79,14:34:93:0.151:2	0/1:67,8:33:75:0.107:2	0/1:63,4:31:67:0.060:2
chr16	15122808	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:32:54:0.074:2	0/1:42,3:32:45:0.067:2	./.
chr16	15122812	rs112323280	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:35,8:31:43:0.186:2	0/1:15,5:29:20:0.250:2	./.	./.	0/1:39,7:32:46:0.152:2	./.	./.	./.	./.	./.	./.
chr16	15122818	rs149469814	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,3:33:50:0.060:2	./.	./.
chr16	15128154	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:32:50:0.080:2	./.	./.
chr16	15129940	rs3198697	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,16:32:28:0.571:2	0/1:8,10:31:18:0.556:2	./.	0/1:21,8:32:29:0.276:2	0/1:9,3:32:12:0.250:2	./.	./.	0/1:1,30:29:31:0.968:2	./.	0/1:13,9:31:22:0.409:2	./.
chr16	15129970	rs7200543	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,18:32:34:0.529:2	./.	./.	0/1:0,17:33:17:1.00:2	./.	0/1:0,23:33:23:1.00:2	0/1:15,9:31:24:0.375:2	0/1:0,25:31:25:1.00:2
chr16	15131962	rs1135999	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,32:33:83:0.386:2	./.	./.	0/1:3,38:33:41:0.927:2	./.	0/1:0,74:34:75:1.00:2	0/1:29,29:33:58:0.500:2	0/1:0,88:32:88:1.00:2
chr16	15131974	rs1136001	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,30:30:79:0.380:2	./.	./.	0/1:4,38:30:42:0.905:2	./.	0/1:0,71:31:71:1.00:2	0/1:26,29:30:55:0.527:2	0/1:0,89:30:89:1.00:2
chr16	15133889	rs14347	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,11:32:29:0.379:2	./.	./.	0/1:0,30:32:30:1.00:2	./.	0/1:2,30:33:32:0.938:2	0/1:26,21:32:47:0.447:2	0/1:0,28:32:28:1.00:2
chr16	15155599	rs370696732	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,19:32:65:0.292:2
chr16	15165103	rs73491931	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,34:31:83:0.410:2	./.	./.	./.	./.	./.	./.
chr16	15166891	rs2941256	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,16:33:18:0.889:2	./.	./.	./.	./.	0/1:1,178:32:179:0.994:2	./.	./.	./.
chr16	15170452	rs2966183	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:31:11:1.00:2	./.	./.	./.	./.	0/1:4,135:31:139:0.971:2	./.	./.	./.
chr16	15170461	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:31:140:0.029:2	./.	./.	./.
chr16	15173907	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:32:168:0.024:2	./.	./.	./.
chr16	15173945	rs142677661	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,34:31:122:0.279:2	./.	./.	./.	./.	./.
chr16	15178499	rs76732059	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,4:31:24:0.167:2	0/1:161,39:31:200:0.195:2	./.	0/1:154,45:30:199:0.226:2	0/1:144,34:31:178:0.191:2	./.	./.	./.	0/1:157,42:32:199:0.211:2
chr16	15179544	rs113730921	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,84:29:197:0.426:2	./.	./.	./.	./.	./.
chr16	15180040	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,5:31:181:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	15180218	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:124,4:32:128:0.031:2	./.	./.	./.	./.	./.	./.
chr16	15180222	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,5:33:117:0.043:2	./.	./.	0/1:134,4:32:138:0.029:2	./.	./.	./.	./.	./.	./.
chr16	15185186	rs151006368	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,46:31:194:0.237:2	./.	./.	./.	./.
chr16	15185196	rs201298856	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,54:33:199:0.271:2
chr16	15185247	.	G	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:177,18:32:195:0.092:2	0/1:187,13:31:200:0.065:2	0/1:78,9:29:87:0.103:2	0/1:184,14:31:198:0.071:2	0/1:180,14:31:195:0.072:2	0/1:181,10:31:191:0.052:2	0/1:173,25:31:198:0.126:2	./.	0/1:184,13:29:197:0.066:2	0/1:150,40:31:190:0.211:2	0/1:186,9:32:197:0.046:2
chr16	15186440	rs150087182	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,61:32:122:0.500:2	0/1:45,47:32:92:0.511:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	15494660	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.	./.	./.
chr16	15494705	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:33:99:0.040:2	./.	./.	./.
chr16	15494721	rs62039092	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:31:16:0.563:2	./.	./.	0/1:50,55:32:105:0.524:2	0/1:34,32:33:66:0.485:2	0/1:2,73:32:75:0.973:2	./.	./.	./.
chr16	15680609	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,30:33:71:0.423:2	./.
chr16	15680642	rs2071332	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,43:31:79:0.544:2	./.	./.	0/1:47,37:31:84:0.440:2	./.	0/1:35,19:32:54:0.352:2	0/1:32,24:32:56:0.429:2	./.
chr16	15692836	rs142983571	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,23:30:43:0.535:2	./.	./.	./.	./.
chr16	15694484	rs79236569	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,76:30:162:0.469:2	./.	./.
chr16	15711335	rs62036917	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,25:33:46:0.543:2	0/1:9,9:32:18:0.500:2	./.
chr16	15790607	rs17283846	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,18:31:36:0.500:2	./.	0/1:1,37:31:38:0.974:2	./.	./.	./.
chr16	15809117	rs28505375	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,30:33:84:0.357:2	./.
chr16	15811023	rs1050163	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,24:30:59:0.407:2	0/1:31,15:32:46:0.326:2	0/1:0,2:32:2:1.00:2	0/1:0,67:30:67:1.00:2	./.	0/1:46,40:31:86:0.465:2	0/1:1,60:30:61:0.984:2	0/1:0,88:30:88:1.00:2	0/1:44,31:32:75:0.413:2	0/1:32,17:31:49:0.347:2	0/1:19,17:30:36:0.472:2
chr16	15811062	rs1050162	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,18:29:47:0.383:2	0/1:24,19:32:43:0.442:2	0/1:0,8:31:8:1.00:2	0/1:0,67:30:67:1.00:2	./.	0/1:58,45:31:103:0.437:2	0/1:0,57:30:57:1.00:2	0/1:0,81:30:81:1.00:2	0/1:56,30:31:86:0.349:2	0/1:27,16:31:43:0.372:2	0/1:24,29:31:53:0.547:2
chr16	15813088	rs199564260	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,28:32:69:0.406:2	./.	./.	./.
chr16	15818141	rs2075511	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,45:29:90:0.506:2	0/1:39,26:29:65:0.400:2	0/1:5,15:30:20:0.750:2	0/1:0,148:29:148:1.00:2	./.	0/1:68,66:29:134:0.493:2	0/1:72,43:30:115:0.374:2	0/1:1,168:29:169:0.994:2	0/1:68,55:30:123:0.447:2	0/1:82,45:30:127:0.354:2	0/1:83,70:28:154:0.458:2
chr16	15818653	rs12907	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,11:32:34:0.324:2	./.
chr16	15818842	rs16967510	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,35:34:67:0.522:2	./.	./.
chr16	15820863	rs16967494	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,12:31:33:0.375:2	0/1:13,16:32:29:0.552:2	./.	./.	0/1:54,23:31:77:0.299:2	0/1:38,25:31:63:0.397:2	0/1:37,23:30:60:0.383:2	./.	./.	./.	0/1:36,29:31:65:0.446:2
chr16	15832460	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:32:115:0.035:2	./.	./.	./.
chr16	15839034	rs1050113	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,14:32:27:0.519:2	0/1:11,11:32:22:0.500:2	./.	./.	0/1:29,20:31:49:0.408:2	0/1:27,19:32:46:0.413:2	0/1:38,20:32:58:0.345:2	./.	./.	./.	0/1:14,10:34:24:0.417:2
chr16	15841773	rs12931799	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,30:32:70:0.429:2	./.	./.
chr16	15850204	rs2272554	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:40,34:27:74:0.459:2	0/1:22,23:29:45:0.511:2	0/1:3,4:24:7:0.571:2	./.	0/1:44,60:27:104:0.577:2	0/1:56,66:27:122:0.541:2	0/1:81,53:27:134:0.396:2	./.	0/1:60,52:29:112:0.464:2	./.	0/1:71,53:28:124:0.427:2
chr16	15865472	rs4781689	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,28:32:68:0.412:2	./.	./.	0/1:36,43:32:79:0.544:2	./.	./.	0/1:23,23:32:46:0.500:2	./.
chr16	15876248	rs143160789	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,24:31:79:0.304:2	./.	./.	./.	./.
chr16	15876302	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:30:78:0.051:2	./.
chr16	15892481	rs12102468	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:30:12:0.417:2	./.	./.	./.	./.	./.	./.	./.
chr16	15917197	rs1050111	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,93:31:181:0.514:2
chr16	15931774	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:32:149:0.027:2	./.	./.	./.	./.
chr16	15932098	rs112650390	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,29:31:47:0.617:2	0/1:22,15:32:37:0.405:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	15961351	rs15784	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,11:30:78:0.141:2	./.	./.	./.	0/1:72,28:32:100:0.280:2
chr16	15961356	rs12598966	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,14:32:81:0.173:2	./.	./.	./.	0/1:73,21:31:94:0.223:2
chr16	15961369	rs60244915	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,17:32:79:0.215:2	./.	./.	./.	0/1:72,12:32:84:0.143:2
chr16	15973653	rs12597053	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.	0/1:8,5:31:13:0.385:2
chr16	15973654	rs8045082	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,5:33:5:1.00:2	0/1:0,7:32:7:1.00:2	./.	0/1:0,4:32:4:1.00:2	./.	0/1:0,6:32:6:1.00:2	0/1:1,5:32:6:0.833:2	0/1:0,8:29:8:1.00:2	0/1:0,3:33:3:1.00:2	./.	0/1:0,12:32:12:1.00:2
chr16	16101810	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,6:31:23:0.261:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	16138313	rs2230669	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,41:32:80:0.513:2	0/1:19,30:31:49:0.612:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,45:29:76:0.592:2
chr16	16138322	rs246221	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,84:30:87:0.966:2	0/1:0,50:29:50:1.00:2	./.	./.	./.	0/1:48,52:30:100:0.520:2	0/1:57,53:29:110:0.482:2	0/1:43,50:29:94:0.538:2	./.	0/1:30,30:28:60:0.500:2	0/1:1,81:30:82:0.988:2
chr16	16139714	rs35587	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,67:30:68:0.985:2	0/1:2,41:29:43:0.953:2	./.	./.	./.	0/1:73,62:30:136:0.459:2	0/1:92,68:30:160:0.425:2	0/1:78,80:29:158:0.506:2	./.	0/1:58,42:31:100:0.420:2	0/1:0,83:30:83:1.00:2
chr16	16162019	rs35605	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:33:89:1.00:2	0/1:0,61:32:61:1.00:2	0/1:1,12:32:13:0.923:2	0/1:0,197:33:197:1.00:2	0/1:125,71:32:196:0.362:2	0/1:0,174:33:174:1.00:2	0/1:113,70:33:183:0.383:2	0/1:111,87:32:198:0.439:2	0/1:0,146:33:146:1.00:2	./.	0/1:0,100:33:100:1.00:2
chr16	16162039	rs8187858	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,81:31:188:0.431:2	0/1:112,73:32:185:0.395:2	./.	./.	./.	0/1:67,54:32:121:0.446:2
chr16	16173232	rs45511401	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,76:31:161:0.472:2	./.	./.	./.	./.	./.
chr16	16177321	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:33:143:0.028:2	./.	./.
chr16	16205435	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,8:31:68:0.118:2	./.	./.	./.	./.
chr16	16228234	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:32:88:0.045:2	./.	./.	./.	./.
chr16	16228242	rs2230671	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:16,16:31:32:0.500:2	0/1:13,7:32:20:0.350:2	0/1:3,5:31:8:0.625:2	./.	./.	./.	./.	./.	./.	./.	0/1:29,19:30:48:0.396:2
chr16	16228265	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,3:35:57:0.053:2	./.
chr16	16251599	rs2238472	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,44:32:45:0.978:2	0/1:1,19:31:20:0.950:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,14:33:29:0.483:2
chr16	16263663	rs2856585	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,8:32:19:0.421:2	0/1:55,53:32:108:0.491:2	./.	./.	./.	0/1:60,56:32:116:0.483:2	./.	./.	0/1:26,31:32:57:0.544:2
chr16	16269799	rs377008733	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,4:31:88:0.045:2	./.	./.	./.	./.	./.	./.
chr16	16271357	rs6416668	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:29:49:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,51:29:51:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,60:29:60:1.00:2	0/1:0,53:28:53:1.00:2	0/1:0,71:30:71:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,58:28:58:1.00:2
chr16	16271409	rs9924755	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,21:31:59:0.356:2	./.	./.	./.	0/1:31,23:31:54:0.426:2	./.
chr16	16272670	rs7500834	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:31:80:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,99:31:99:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,68:32:68:1.00:2
chr16	16278863	rs8058694	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,70:32:71:0.986:2	0/1:0,51:31:51:1.00:2	./.	./.	./.	0/1:0,115:31:115:1.00:2	./.	./.	./.	0/1:54,47:31:101:0.465:2	./.
chr16	16278869	rs8058696	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,63:29:64:0.984:2	0/1:0,46:28:46:1.00:2	./.	./.	./.	0/1:0,111:28:111:1.00:2	./.	./.	./.	0/1:49,43:27:92:0.467:2	./.
chr16	16281007	rs12931472	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,25:33:25:1.00:2	0/1:0,8:29:8:1.00:2	./.	./.	./.	0/1:0,21:33:22:1.00:2	./.	./.	./.	0/1:18,13:31:31:0.419:2	./.
chr16	16282712	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:32:164:0.024:2	./.	./.	./.	./.
chr16	16291971	rs9940825	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,50:30:133:0.376:2	0/1:0,72:30:72:1.00:2	0/1:88,52:29:140:0.371:2	0/1:88,48:30:136:0.353:2	0/1:57,41:32:98:0.418:2	./.	./.
chr16	16291983	rs9930886	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,46:31:130:0.354:2	0/1:0,73:32:73:1.00:2	0/1:80,45:30:125:0.360:2	0/1:81,46:31:127:0.362:2	0/1:56,37:32:93:0.398:2	./.	./.
chr16	16302586	rs72657698	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,38:32:142:0.268:2
chr16	16306059	rs72664282	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,39:31:189:0.206:2	0/1:146,41:32:187:0.219:2	./.	./.	./.	./.
chr16	16357011	rs111992615	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,15:31:186:0.081:2	0/1:170,22:31:192:0.115:2
chr16	16367613	rs202070282	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,34:29:133:0.256:2	0/1:100,33:29:133:0.248:2	./.	./.	0/1:113,41:29:154:0.266:2	./.	./.	./.
chr16	16367669	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,5:33:22:0.227:2	./.
chr16	16367678	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,3:28:16:0.214:2	./.
chr16	16367702	rs200400220	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,31:31:33:0.969:2	0/1:0,7:33:7:1.00:2	0/1:0,2:33:2:1.00:2	0/1:2,57:32:59:0.966:2	0/1:1,26:32:27:0.963:2	0/1:2,55:32:57:0.965:2	0/1:1,37:32:38:0.974:2	0/1:0,54:32:54:1.00:2	0/1:0,49:33:49:1.00:2	./.	0/1:0,22:31:22:1.00:2
chr16	16371277	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:174,12:32:188:0.065:2	0/1:181,11:32:193:0.057:2	./.	0/1:188,10:32:198:0.051:2	./.	./.	./.	0/1:189,6:32:196:0.031:2	0/1:188,7:32:195:0.036:2	./.	./.
chr16	16371319	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,9:30:195:0.046:2	./.
chr16	16376977	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,5:31:196:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,5:33:200:0.025:2
chr16	16381696	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,70:31:190:0.370:2	0/1:149,41:31:190:0.216:2
chr16	16387522	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:165,12:32:177:0.068:2	0/1:160,28:31:188:0.149:2	0/1:170,24:29:195:0.124:2	0/1:174,14:32:188:0.074:2	0/1:174,16:32:191:0.084:2	0/1:168,12:32:180:0.067:2	0/1:179,9:33:188:0.048:2	0/1:166,20:33:186:0.108:2	0/1:168,18:34:186:0.097:2	0/1:173,14:30:187:0.075:2	0/1:173,10:31:183:0.055:2
chr16	17202757	rs35309694	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,46:32:74:0.622:2	./.	./.	./.	./.
chr16	17202801	rs34511974	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:28,47:31:75:0.627:2	0/1:18,24:32:42:0.571:2	./.	./.	./.	./.	./.	0/1:66,61:32:127:0.480:2	./.	./.	./.
chr16	17228368	rs12708815	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:32:20:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,3:33:3:1.00:2	0/1:10,19:33:29:0.655:2	0/1:0,29:30:29:1.00:2	./.	0/1:19,17:32:36:0.472:2	0/1:29,16:31:45:0.356:2	0/1:20,19:32:39:0.487:2	0/1:7,12:33:19:0.632:2	0/1:16,13:32:29:0.448:2
chr16	17292074	rs28709752	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,17:29:41:0.415:2	./.	./.	./.	./.	./.
chr16	17294348	rs35488326	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,53:32:102:0.520:2	./.
chr16	17353042	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:32:182:0.022:2	./.	./.	./.
chr16	17451887	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:31:96:0.042:2
chr16	17451897	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,3:33:60:0.050:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	18511337	rs200530124	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:130,14:29:144:0.097:2	0/1:165,19:29:184:0.103:2	0/1:32,11:30:43:0.256:2	0/1:135,27:30:162:0.167:2	0/1:144,25:30:169:0.148:2	0/1:168,18:30:186:0.097:2	0/1:173,16:29:189:0.085:2	0/1:154,35:30:189:0.185:2	0/1:143,25:32:168:0.149:2	0/1:97,27:30:125:0.218:2	0/1:137,25:29:162:0.154:2
chr16	18512328	.	T	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:171,13:32:184:0.071:2	0/1:178,14:31:192:0.073:2	0/1:137,17:32:154:0.110:2	./.	0/1:186,7:29:193:0.036:2	./.	./.	0/1:186,9:31:195:0.046:2	0/1:188,5:33:193:0.026:2	0/1:183,4:33:187:0.021:2	0/1:177,8:32:185:0.043:2
chr16	18518154	rs201883561	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,61:32:190:0.323:2	0/1:165,27:30:192:0.141:2
chr16	18522873	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:173,11:32:184:0.060:2	./.	0/1:191,5:31:196:0.026:2	0/1:188,8:29:196:0.041:2	./.	./.	0/1:190,6:32:196:0.031:2	0/1:185,7:32:192:0.036:2	./.	0/1:186,9:31:196:0.046:2
chr16	18528532	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,10:30:193:0.052:2	0/1:187,5:31:192:0.026:2
chr16	18528574	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:186,6:32:193:0.031:2	./.	0/1:180,10:32:191:0.053:2	./.	./.	./.	0/1:189,8:31:197:0.041:2	0/1:188,5:28:193:0.026:2	./.	./.
chr16	18532173	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,8:22:182:0.046:2	./.
chr16	18532182	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,7:31:191:0.037:2	0/1:183,5:33:188:0.027:2
chr16	18532238	rs200294351	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:149,45:29:195:0.232:2	0/1:159,35:28:194:0.180:2	./.	./.	0/1:151,43:28:194:0.222:2	./.	./.	./.
chr16	18542848	rs200082338	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,29:31:198:0.146:2	./.	./.	./.
chr16	18812768	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:122,4:31:126:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr16	18823379	rs2606556	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:34:71:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,88:33:88:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,91:33:91:1.00:2	./.	0/1:0,121:34:121:1.00:2	0/1:2,52:33:54:0.963:2	0/1:0,104:33:104:1.00:2
chr16	18839362	rs12445870	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,87:31:87:1.00:2	0/1:47,26:30:73:0.356:2	0/1:45,39:30:84:0.464:2	0/1:2,46:30:48:0.958:2	0/1:41,36:30:77:0.468:2	0/1:43,48:32:91:0.527:2	0/1:0,66:31:66:1.00:2	0/1:59,43:31:102:0.422:2
chr16	18846429	rs56079655	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,9:32:23:0.391:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	18847416	rs3816919	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,74:32:145:0.510:2	./.	./.	0/1:56,79:32:135:0.585:2	./.	./.	./.
chr16	18847479	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,4:30:86:0.047:2	./.	./.	./.	./.	./.	./.	./.
chr16	18847740	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,106:33:197:0.538:2	./.	./.	./.
chr16	18853744	rs12926959	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,42:32:102:0.412:2	./.	./.	0/1:62,39:33:101:0.386:2	./.	./.	./.
chr16	18861335	rs2650613	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,183:30:184:0.995:2	0/1:3,185:29:188:0.984:2	0/1:100,86:29:186:0.462:2	0/1:3,189:30:192:0.984:2	0/1:0,185:29:185:1.00:2	0/1:1,189:30:190:0.995:2	0/1:1,153:29:154:0.994:2	0/1:99,86:29:185:0.465:2
chr16	18883566	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:32:146:0.028:2	./.	./.	./.
chr16	18887501	rs17842615	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,9:30:164:0.055:2
chr16	18887587	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:34:197:0.020:2	./.	./.	./.
chr16	18902172	rs9932903	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,90:34:198:0.455:2	./.	./.
chr16	18903658	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:31:167:0.024:2	0/1:158,4:33:162:0.025:2	./.	0/1:159,7:32:166:0.042:2
chr16	18907410	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,7:32:127:0.055:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:31:153:0.026:2
chr16	18907429	rs143230109	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,131:31:164:0.799:2	0/1:95,41:31:136:0.301:2	0/1:95,58:31:153:0.379:2	0/1:30,94:32:124:0.758:2	0/1:100,49:32:149:0.329:2	0/1:79,51:33:130:0.392:2	0/1:22,113:33:136:0.837:2	0/1:92,77:33:169:0.456:2
chr16	18907513	.	A	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:112,17:31:129:0.132:2	0/1:60,16:30:76:0.211:2	./.	0/1:151,7:31:158:0.044:2	0/1:113,10:30:123:0.081:2	0/1:171,17:30:188:0.090:2	0/1:116,34:31:150:0.227:2	0/1:147,30:30:177:0.169:2	0/1:139,44:31:183:0.240:2	./.	0/1:135,12:32:147:0.082:2
chr16	18937325	rs375781376	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:27:4:1.00:2	./.
chr16	19020663	rs75615247	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,23:28:52:0.442:2	./.	./.	./.	./.	./.	./.	./.
chr16	19041595	rs28583298	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,60:33:60:1.00:2	0/1:0,45:32:45:1.00:2	./.	./.	0/1:53,36:32:89:0.404:2	0/1:0,104:32:104:1.00:2	0/1:55,51:32:106:0.481:2	0/1:2,96:32:98:0.980:2	0/1:4,101:33:105:0.962:2	0/1:1,81:33:82:0.988:2	0/1:60,55:33:115:0.478:2
chr16	19067933	rs17854511	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,104:32:104:1.00:2	0/1:2,54:32:56:0.964:2	0/1:8,11:32:19:0.579:2	./.	0/1:106,84:32:190:0.442:2	0/1:0,180:32:180:1.00:2	0/1:93,93:33:186:0.500:2	0/1:0,173:32:173:1.00:2	0/1:1,164:33:165:0.994:2	0/1:0,137:33:137:1.00:2	0/1:96,60:33:156:0.385:2
chr16	19079037	rs17357834	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.
chr16	19085298	rs11074359	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,85:32:85:1.00:2	0/1:0,48:32:48:1.00:2	0/1:8,9:32:17:0.529:2	./.	0/1:66,31:31:97:0.320:2	0/1:0,104:31:104:1.00:2	0/1:84,48:32:132:0.364:2	0/1:0,125:31:125:1.00:2	0/1:0,111:33:111:1.00:2	0/1:2,106:32:108:0.981:2	0/1:60,78:32:138:0.565:2
chr16	19125836	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	19128268	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:128,5:31:133:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr16	19130998	rs141301863	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,7:31:26:0.269:2	./.	./.	./.	./.	./.	./.	./.
chr16	19131356	rs55809104	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,88:30:191:0.461:2
chr16	19131754	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,7:15:32:0.219:2	0/1:41,8:19:49:0.163:2	./.	0/1:37,9:14:46:0.196:2
chr16	19195130	rs11541511	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,33:31:60:0.550:2	./.	0/1:40,34:30:74:0.459:2	./.	./.	./.	./.	./.
chr16	19195140	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:33:78:0.052:2	./.	./.	./.
chr16	19297219	rs179196	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,51:30:105:0.486:2	./.	./.	./.
chr16	19310092	rs1548450	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,38:29:86:0.442:2	0/1:51,36:27:87:0.414:2	0/1:36,31:30:67:0.463:2	./.	./.
chr16	19471571	rs36019638	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:39,34:32:73:0.466:2	0/1:6,17:32:23:0.739:2	./.	./.	./.	./.	./.	./.	./.	0/1:36,23:31:59:0.390:2	./.
chr16	19475099	rs61737709	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,9:32:10:0.900:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	19492752	rs35421097	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,42:32:117:0.359:2	./.	./.	./.
chr16	19498565	rs34170384	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:17,16:30:33:0.485:2	0/1:10,8:31:18:0.444:2	./.	./.	./.	./.	./.	./.	./.	0/1:29,29:28:58:0.500:2	./.
chr16	19522191	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:32:150:0.027:2	./.	./.	./.	./.	./.
chr16	19528358	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:196,4:33:200:0.020:2	./.	./.
chr16	19547357	rs10492785	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,35:28:61:0.574:2	./.	./.	./.	./.	./.	./.
chr16	19547503	rs3751821	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,7:32:19:0.368:2	./.	./.	./.	./.	./.	./.
chr16	19547747	rs226891	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,27:32:27:1.00:2	0/1:0,13:32:13:1.00:2	./.	0/1:1,32:33:33:0.970:2	0/1:0,28:32:28:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,32:32:32:1.00:2	0/1:15,16:32:31:0.516:2	0/1:0,35:33:35:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,38:33:38:1.00:2
chr16	19548116	rs7190666	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:76,53:31:129:0.411:2	0/1:49,42:30:91:0.462:2	0/1:7,12:30:19:0.632:2	./.	./.	0/1:4,126:30:130:0.969:2	0/1:7,119:30:126:0.944:2	./.	./.	0/1:85,35:30:120:0.292:2	0/1:107,90:31:197:0.457:2
chr16	19548152	rs179050	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,59:32:138:0.428:2	./.	./.	./.	./.	./.	./.	./.
chr16	19548290	rs7191012	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:41,37:33:78:0.474:2	0/1:28,21:32:49:0.429:2	0/1:5,5:33:10:0.500:2	./.	./.	0/1:0,59:32:59:1.00:2	0/1:1,48:32:49:0.980:2	./.	./.	0/1:48,37:33:85:0.435:2	0/1:58,54:33:112:0.482:2
chr16	19548735	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:32:93:0.043:2	./.
chr16	19548740	rs17227190	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:35:9:0.333:2	./.	./.	./.	./.	0/1:57,63:33:120:0.525:2	./.	./.	./.
chr16	19554070	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,18:33:39:0.462:2	./.
chr16	19567088	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,14:11:82:0.171:2	./.	./.	./.	./.	./.	0/1:43,16:10:60:0.271:2
chr16	19590444	rs11866050	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,23:28:57:0.404:2	./.	./.	./.	./.	./.	./.
chr16	19621671	rs149360565	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:28:9:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	19648898	rs117893616	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,5:30:15:0.333:2	./.	./.	./.	./.	./.	./.
chr16	19680546	rs957676	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:30,15:30:45:0.333:2	0/1:22,9:30:31:0.290:2	0/1:2,4:31:6:0.667:2	./.	0/1:36,3:32:39:0.077:2	0/1:1,67:29:68:0.985:2	0/1:0,19:29:19:1.00:2	0/1:35,27:30:62:0.435:2	0/1:49,20:29:69:0.290:2	0/1:0,37:30:37:1.00:2	0/1:0,62:29:62:1.00:2
chr16	19693627	rs117014682	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,33:31:87:0.379:2	./.	./.	./.	./.	./.	./.
chr16	19710890	rs150300279	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,39:31:71:0.549:2	./.	./.	./.	./.	./.	./.	./.
chr16	19711717	rs61738005	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,31:32:62:0.500:2	0/1:14,13:32:27:0.481:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	19718261	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,4:31:101:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr16	19718274	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,4:30:100:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr16	19718306	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,36:32:64:0.563:2	0/1:23,22:32:45:0.489:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	19725575	rs71384425	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,69:31:162:0.426:2	./.	./.	./.
chr16	19725624	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,6:29:121:0.050:2	./.	./.	./.	./.	0/1:104,4:30:108:0.037:2	./.	./.
chr16	19725663	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,6:31:81:0.074:2	./.	./.	./.	./.	0/1:60,4:32:64:0.063:2	./.	./.
chr16	19726275	rs11640454	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,17:32:39:0.436:2	0/1:11,15:33:26:0.577:2	./.	./.	0/1:12,10:32:22:0.455:2	0/1:12,24:31:36:0.667:2	0/1:27,19:32:46:0.413:2	./.	./.	0/1:25,30:32:55:0.545:2	0/1:32,27:32:59:0.458:2
chr16	19729797	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:32:72:0.056:2	./.	./.
chr16	19800213	rs7191155	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,12:29:52:0.231:2	./.	./.	./.	./.	./.
chr16	19883623	rs189232467	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,11:18:76:0.147:2	./.	0/1:15,6:15:21:0.286:2	0/1:92,25:11:117:0.214:2	./.	0/1:88,18:13:106:0.170:2	0/1:112,20:10:133:0.152:2	0/1:102,22:10:124:0.177:2	./.	./.	./.
chr16	19883969	rs200495483	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr16	19884054	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,6:32:41:0.146:2	./.	./.	./.	./.
chr16	20043330	rs2147865	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:44,38:32:82:0.463:2	0/1:29,27:32:56:0.482:2	0/1:0,10:32:10:1.00:2	./.	./.	0/1:69,66:31:135:0.489:2	./.	./.	./.	./.	./.
chr16	20043618	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:33:187:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	20328685	rs1129818	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:24,26:33:50:0.520:2	0/1:20,11:32:31:0.355:2	./.	0/1:31,29:33:60:0.483:2	./.	./.	./.	./.	0/1:0,68:33:68:1.00:2	0/1:36,18:32:54:0.333:2	0/1:1,61:33:62:0.984:2
chr16	20331614	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:32:104:0.038:2	./.	./.	./.	./.
chr16	20331737	rs73541251	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:29,34:29:63:0.540:2	0/1:20,19:30:39:0.487:2	./.	./.	./.	./.	./.	0/1:59,44:29:103:0.427:2	./.	./.	./.
chr16	20334679	rs4411505	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:47,25:32:72:0.347:2	0/1:26,14:32:40:0.350:2	./.	0/1:36,25:30:61:0.410:2	./.	0/1:32,37:32:69:0.536:2	./.	./.	0/1:0,58:31:58:1.00:2	0/1:33,20:31:53:0.377:2	0/1:0,68:31:68:1.00:2
chr16	20335264	rs145297751	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,25:30:70:0.357:2	0/1:23,26:30:49:0.531:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	20335325	rs12930599	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,81:31:82:0.988:2	0/1:39,38:32:77:0.494:2	0/1:51,44:31:97:0.463:2
chr16	20344643	rs145165861	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,87:33:189:0.460:2	./.	./.	./.	./.
chr16	20352486	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:31:79:0.051:2
chr16	20352600	rs373412017	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,17:31:44:0.386:2	./.	./.
chr16	20359633	rs28544423	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,61:31:138:0.442:2	./.	0/1:77,63:30:140:0.450:2	./.	0/1:86,51:32:138:0.372:2	./.	0/1:44,39:31:83:0.470:2
chr16	20359831	rs13335818	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,16:28:24:0.667:2	./.	0/1:10,10:28:20:0.500:2	./.	0/1:11,4:27:15:0.267:2	./.	0/1:6,3:27:9:0.333:2
chr16	20360101	rs7193058	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,2:29:2:1.00:2	./.	./.	0/1:0,3:30:3:1.00:2	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.
chr16	20370810	rs9652588	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,7:32:17:0.412:2	0/1:91,53:32:144:0.368:2	./.	0/1:107,63:32:170:0.371:2	0/1:101,45:32:146:0.308:2	0/1:97,80:32:177:0.452:2	./.	0/1:2,114:32:116:0.983:2	0/1:70,81:31:151:0.536:2
chr16	20370816	rs9652589	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,7:32:16:0.438:2	0/1:88,54:32:142:0.380:2	./.	0/1:108,62:32:170:0.365:2	0/1:102,43:32:145:0.297:2	0/1:95,91:32:186:0.489:2	./.	0/1:2,113:32:115:0.983:2	0/1:65,77:32:142:0.542:2
chr16	20373899	rs139748181	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,94:31:188:0.500:2	./.	./.	./.	./.
chr16	20376755	rs8054266	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:31:10:1.00:2	0/1:33,37:32:70:0.529:2	./.	0/1:28,31:32:59:0.525:2	0/1:42,17:32:59:0.288:2	0/1:54,39:32:93:0.419:2	./.	0/1:1,43:31:44:0.977:2	0/1:32,43:31:75:0.573:2
chr16	20410488	rs7185940	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,46:32:48:0.958:2	0/1:0,32:31:32:1.00:2	0/1:2,5:30:7:0.714:2	./.	0/1:2,79:31:81:0.975:2	./.	0/1:0,93:31:93:1.00:2	0/1:73,56:30:129:0.434:2	0/1:38,43:33:81:0.531:2	./.	0/1:1,60:31:61:0.984:2
chr16	20410547	rs9926580	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:3,39:31:42:0.929:2	0/1:0,37:32:37:1.00:2	0/1:3,3:29:6:0.500:2	./.	0/1:1,76:31:77:0.987:2	./.	0/1:0,93:31:93:1.00:2	0/1:43,46:31:89:0.517:2	0/1:30,31:31:61:0.508:2	./.	0/1:0,42:31:43:1.00:2
chr16	20422993	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,42:33:77:0.545:2	0/1:24,18:32:42:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	20423000	rs9928053	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,65:33:128:0.508:2	./.	./.	./.
chr16	20430678	rs7192210	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,53:32:102:0.520:2	./.	./.	./.
chr16	20432605	rs59025904	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,14:29:29:0.483:2	./.	./.	./.
chr16	20435262	rs12103211	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,100:28:193:0.518:2	./.	./.	./.
chr16	20435314	rs73545426	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,66:31:137:0.482:2	./.	./.	./.
chr16	20435362	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,5:26:126:0.040:2	./.	./.	./.
chr16	20441053	rs8062344	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:30:7:0.857:2	./.	./.	./.	0/1:33,37:30:70:0.529:2	./.	./.	./.	0/1:0,39:30:39:1.00:2
chr16	20441084	rs8063682	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:29:5:0.800:2	./.	./.	./.	0/1:21,22:29:43:0.512:2	./.	./.	./.	0/1:0,26:30:26:1.00:2
chr16	20448430	rs148610822	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,6:33:153:0.039:2	./.	./.	./.	./.
chr16	20471450	rs59292608	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,19:32:43:0.442:2	./.	./.	./.	0/1:3,39:32:42:0.929:2
chr16	20471556	rs140454824	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,9:31:146:0.062:2	./.	./.	0/1:94,12:30:106:0.113:2	./.
chr16	20476852	rs7187246	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,57:31:195:0.292:2	./.	./.	./.	0/1:39,158:32:197:0.802:2
chr16	20476995	rs62035041	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:152,38:31:190:0.200:2	0/1:97,43:31:140:0.307:2	0/1:40,5:31:45:0.111:2	0/1:145,25:31:171:0.147:2	0/1:150,42:30:192:0.219:2	0/1:142,43:30:185:0.232:2	0/1:156,40:31:196:0.204:2	0/1:159,33:31:192:0.172:2	0/1:134,37:30:171:0.216:2	0/1:140,40:31:180:0.222:2	0/1:142,33:31:175:0.189:2
chr16	20488696	rs1700805	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,61:33:197:0.310:2	./.	./.	./.	0/1:54,128:33:183:0.703:2
chr16	20492000	rs146233716	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,44:32:45:0.978:2	0/1:0,29:32:29:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,43:32:43:1.00:2	0/1:1,27:33:28:0.964:2	0/1:1,43:32:44:0.977:2	0/1:0,38:33:38:1.00:2	0/1:0,43:33:43:1.00:2	0/1:0,60:32:60:1.00:2
chr16	20552075	rs16970280	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:76,75:31:152:0.497:2	0/1:41,45:30:86:0.523:2	0/1:0,7:31:7:1.00:2	0/1:0,175:30:175:1.00:2	0/1:79,62:30:141:0.440:2	0/1:0,168:30:168:1.00:2	0/1:62,54:30:116:0.466:2	0/1:0,145:30:145:1.00:2	0/1:0,139:31:139:1.00:2	0/1:0,151:31:151:1.00:2	0/1:0,153:31:153:1.00:2
chr16	20554248	rs140717461	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,60:32:115:0.522:2
chr16	20554295	rs1054968	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:162,4:32:166:0.024:2	./.	./.	./.	./.	0/1:183,6:29:189:0.032:2	./.	./.	0/1:192,4:32:196:0.020:2	./.	0/1:175,5:33:180:0.028:2
chr16	20554582	rs142632912	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:158,29:31:187:0.155:2	0/1:87,19:31:106:0.179:2	0/1:11,5:29:16:0.313:2	0/1:161,17:32:178:0.096:2	0/1:133,17:31:150:0.113:2	0/1:156,29:32:186:0.157:2	0/1:143,8:32:151:0.053:2	0/1:148,24:31:172:0.140:2	0/1:140,31:32:171:0.181:2	0/1:124,24:32:149:0.162:2	0/1:148,25:30:173:0.145:2
chr16	20556494	rs141823499	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,55:30:114:0.482:2	./.	./.	./.	./.	./.	./.	./.
chr16	20557791	rs139236064	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,32:33:167:0.192:2	./.	./.	./.	0/1:135,46:32:181:0.254:2
chr16	20559403	rs202090220	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,3:33:33:0.091:2	./.	./.	./.	./.
chr16	20559726	rs138313532	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,65:31:196:0.332:2	./.	./.	./.	./.	./.
chr16	20563528	rs77863699	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:33:142:0.028:2	0/1:98,91:32:189:0.481:2
chr16	20570661	rs62035059	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:29:89:1.00:2	0/1:0,60:28:60:1.00:2	0/1:0,12:29:12:1.00:2	0/1:0,91:29:91:1.00:2	0/1:0,79:28:79:1.00:2	0/1:1,91:30:92:0.989:2	0/1:1,72:28:73:0.986:2	0/1:0,85:29:85:1.00:2	0/1:0,101:29:101:1.00:2	0/1:0,98:28:98:1.00:2	0/1:1,114:28:115:0.991:2
chr16	20570756	rs74479331	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:35:100:0.040:2	./.	./.	./.	0/1:146,5:30:151:0.033:2
chr16	20576048	rs112352583	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,38:30:106:0.358:2	./.	./.	0/1:48,32:30:80:0.400:2	./.
chr16	20635418	rs3743690	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,88:33:190:0.463:2	./.	./.	0/1:93,63:32:156:0.404:2	./.
chr16	20636814	rs2301672	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,65:30:154:0.422:2	./.	./.	0/1:43,27:30:70:0.386:2	./.
chr16	20638576	rs1692729	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,29:31:65:0.446:2	./.	./.	0/1:36,26:32:62:0.419:2	0/1:34,38:32:72:0.528:2
chr16	20648702	rs151328	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,30:31:54:0.556:2
chr16	20748331	rs11074471	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,95:31:186:0.511:2
chr16	20749071	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,4:33:116:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr16	20749078	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,4:31:119:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr16	20787209	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,4:29:56:0.071:2	./.	./.	./.	./.	./.	./.	./.
chr16	20796387	rs5716	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,15:30:39:0.385:2
chr16	20802007	rs34381224	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,50:31:135:0.370:2	./.	./.	./.	./.	./.
chr16	20809122	rs76921366	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:95,12:19:107:0.112:2	./.	./.	0/1:98,12:16:110:0.109:2	./.	./.	0/1:87,13:14:100:0.130:2	0/1:94,16:13:110:0.145:2	./.	./.	0/1:116,20:18:136:0.147:2
chr16	20809283	rs11648835	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,67:32:123:0.545:2
chr16	20810067	rs3213646	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,73:32:74:0.986:2	0/1:0,46:32:46:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,69:33:69:1.00:2	0/1:29,25:31:54:0.463:2	0/1:1,67:32:68:0.985:2	0/1:12,13:32:26:0.520:2	0/1:22,26:33:48:0.542:2	0/1:0,56:33:56:1.00:2	0/1:0,48:32:48:1.00:2	0/1:40,46:32:86:0.535:2
chr16	20811681	rs2301771	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:32:77:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,107:32:107:1.00:2	0/1:31,13:31:44:0.295:2	0/1:2,67:31:69:0.971:2	0/1:23,13:31:36:0.361:2	0/1:61,46:31:107:0.430:2	0/1:0,111:32:111:1.00:2	0/1:1,62:32:63:0.984:2	0/1:0,95:32:95:1.00:2
chr16	20855309	rs9929443	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:32:92:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,7:32:7:1.00:2	0/1:2,102:32:104:0.981:2	0/1:0,58:32:58:1.00:2	0/1:0,98:32:98:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,112:33:112:1.00:2	0/1:1,76:33:77:0.987:2	0/1:0,99:32:99:1.00:2
chr16	20873767	rs7187522	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:29:30:1.00:2	0/1:0,19:29:19:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,41:30:41:1.00:2	0/1:29,30:30:59:0.508:2	0/1:0,47:30:47:1.00:2	0/1:34,29:29:63:0.460:2	0/1:35,24:28:59:0.407:2	0/1:0,47:31:47:1.00:2	0/1:2,21:29:23:0.913:2	0/1:0,32:28:32:1.00:2
chr16	20959918	rs2301620	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,29:31:60:0.483:2	./.	./.	./.	./.	./.	./.
chr16	20966273	rs12924551	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,34:31:68:0.500:2	./.	./.	./.	./.	./.	./.
chr16	20966362	rs34051490	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,24:33:40:0.600:2	./.	./.	./.	./.	./.	./.
chr16	20970606	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:128:0.031:2	./.
chr16	20975069	rs3743696	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,89:31:170:0.524:2	./.	./.	./.	./.	./.	./.
chr16	20975303	rs3743697	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,72:29:135:0.533:2	./.	./.	./.	./.	./.	./.
chr16	20975522	rs3826156	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,14:27:18:0.778:2	./.	./.	./.	./.	./.	./.
chr16	20976360	rs33928718	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,49:29:101:0.485:2	./.	./.	./.	./.	./.	./.
chr16	20981162	rs12929546	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,36:29:92:0.391:2	./.	./.	./.	./.	./.	./.
chr16	20996981	rs61734980	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,18:32:49:0.367:2	./.	./.	./.	./.
chr16	20998720	rs111770788	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:31:12:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	21008690	rs3115446	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,147:32:148:0.993:2	0/1:0,89:32:89:1.00:2	0/1:15,12:32:27:0.444:2	0/1:92,86:33:178:0.483:2	0/1:87,107:32:194:0.552:2	0/1:1,171:33:172:0.994:2	0/1:100,90:33:190:0.474:2	./.	0/1:0,150:34:150:1.00:2	0/1:69,59:33:128:0.461:2	0/1:0,144:33:145:1.00:2
chr16	21038401	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,4:32:56:0.071:2	./.	./.	./.	./.	./.	./.	./.
chr16	21042376	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:30:68:0.059:2	./.	./.	./.	./.
chr16	21045369	rs2112494	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,38:30:82:0.463:2	./.	./.	./.
chr16	21051209	rs330150	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,30:32:87:0.345:2	./.	0/1:27,27:32:54:0.500:2	./.	./.	./.	./.	0/1:51,37:32:88:0.420:2
chr16	21078693	rs861424	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,23:29:55:0.426:2	0/1:0,26:29:26:1.00:2	0/1:21,15:29:36:0.417:2	0/1:22,18:29:40:0.450:2	./.	./.	./.	0/1:24,19:30:43:0.442:2
chr16	21139071	rs72780871	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,19:32:40:0.475:2	./.
chr16	21145648	rs11074483	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:21,21:32:42:0.500:2	0/1:5,9:31:14:0.643:2	./.	./.	./.	./.	./.	0/1:27,33:32:60:0.550:2	0/1:26,22:31:48:0.458:2	./.	0/1:27,13:32:40:0.325:2
chr16	21151913	rs72780891	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:61,64:32:125:0.512:2	0/1:53,53:32:106:0.500:2	./.	./.	./.	./.	./.	0/1:101,90:31:191:0.471:2	0/1:103,88:32:191:0.461:2	./.	0/1:79,97:31:176:0.551:2
chr16	21157339	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:33:107:0.037:2
chr16	21185384	rs1046480	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:82,73:32:156:0.471:2	0/1:47,30:33:77:0.390:2	0/1:0,25:30:25:1.00:2	./.	./.	./.	./.	./.	0/1:99,85:33:184:0.462:2	0/1:95,75:32:170:0.441:2	./.
chr16	21190853	rs1063087	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,22:33:36:0.611:2	0/1:15,9:32:24:0.375:2	./.	0/1:0,37:32:37:1.00:2	0/1:13,22:32:35:0.629:2	0/1:2,29:32:31:0.935:2	0/1:0,45:32:45:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,35:32:35:1.00:2	0/1:26,17:34:43:0.395:2	0/1:0,49:33:49:1.00:2
chr16	21210935	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:31:144:0.028:2	./.	./.	./.	./.	./.
chr16	21215672	rs2075526	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,39:30:94:0.415:2	0/1:27,38:30:65:0.585:2	0/1:14,7:30:21:0.333:2	0/1:75,59:30:134:0.440:2	./.	0/1:2,78:30:80:0.975:2	./.	0/1:84,60:30:144:0.417:2	./.	./.	0/1:86,58:30:144:0.403:2
chr16	21217061	rs16971234	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,53:32:53:1.00:2	0/1:57,37:32:94:0.394:2	0/1:43,43:32:86:0.500:2	0/1:44,25:31:69:0.362:2	./.
chr16	21222672	rs2075520	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,43:32:44:0.977:2	./.	0/1:0,44:32:44:1.00:2	0/1:22,21:32:43:0.488:2	./.
chr16	21261685	rs17707647	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,18:33:38:0.474:2	0/1:7,6:33:13:0.462:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	21262126	rs74405183	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,11:30:18:0.611:2	./.	./.	./.	./.	./.	0/1:81,90:32:171:0.526:2	./.	./.
chr16	21272591	rs14122	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:69,47:30:116:0.405:2	0/1:30,36:29:66:0.545:2	./.	./.	0/1:64,82:30:146:0.562:2	0/1:86,67:29:153:0.438:2	./.	0/1:82,74:29:156:0.474:2	./.	./.	./.
chr16	21327273	rs12446322	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	0/1:1,3:33:4:0.750:2	./.	0/1:8,3:29:11:0.273:2	./.	./.	0/1:5,16:32:21:0.762:2
chr16	21396962	rs142653326	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,95:31:195:0.487:2	./.	./.	./.	./.	./.	0/1:4,183:31:187:0.979:2	./.
chr16	21658697	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,4:31:85:0.047:2	./.	./.	./.	./.	./.	./.
chr16	21698949	rs16972658	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	21730449	rs215901	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,40:32:85:0.471:2	0/1:12,24:32:36:0.667:2	0/1:0,13:32:13:1.00:2	0/1:63,35:32:98:0.357:2	0/1:0,54:31:54:1.00:2	0/1:1,84:31:85:0.988:2	0/1:0,96:32:96:1.00:2	0/1:51,45:31:98:0.469:2	0/1:67,42:32:109:0.385:2	0/1:60,48:32:108:0.444:2	0/1:2,81:32:83:0.976:2
chr16	21742179	rs139312489	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,6:34:183:0.033:2	./.	./.	0/1:182,14:33:196:0.071:2
chr16	21771873	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,8:29:97:0.082:2	./.	./.	0/1:52,7:27:59:0.119:2	./.	0/1:50,5:31:55:0.091:2	./.	0/1:54,5:31:59:0.085:2
chr16	21994411	rs7282	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,21:32:45:0.467:2	0/1:12,16:32:28:0.571:2	0/1:8,23:32:31:0.742:2	./.	./.	./.	0/1:20,17:33:37:0.459:2	./.
chr16	22137603	rs55732851	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:60,61:30:121:0.504:2	0/1:36,24:30:60:0.400:2	0/1:1,21:31:22:0.955:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	22144318	rs1105929	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,3:28:11:0.273:2	0/1:38,23:26:61:0.377:2	0/1:61,75:26:136:0.551:2	0/1:50,48:28:98:0.490:2	./.	0/1:58,58:26:116:0.500:2	./.	0/1:1,67:28:68:0.985:2	0/1:25,37:27:62:0.597:2
chr16	22155629	rs9937453	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,71:33:149:0.477:2	0/1:38,38:33:76:0.500:2	0/1:0,15:32:15:1.00:2	0/1:45,62:33:107:0.579:2	./.	./.	./.	0/1:80,87:33:167:0.521:2	./.	0/1:0,130:32:130:1.00:2	./.
chr16	22157582	rs61744122	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,60:32:136:0.441:2	./.	./.	./.
chr16	22159551	rs191488230	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,7:29:16:0.438:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	22161136	rs1991020	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:32:74:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,90:33:90:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,139:32:139:1.00:2	0/1:1,160:32:161:0.994:2	0/1:0,94:33:94:1.00:2	0/1:0,87:33:87:1.00:2	0/1:0,85:33:85:1.00:2
chr16	22161152	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:37,9:31:46:0.196:2	./.	./.	./.	0/1:76,5:29:81:0.062:2	./.	0/1:93,7:28:100:0.070:2	0/1:87,8:30:95:0.084:2	./.	0/1:52,6:31:58:0.103:2	0/1:52,8:30:60:0.133:2
chr16	22161217	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:116,4:31:120:0.033:2	./.	./.	./.	./.	./.	./.
chr16	22237118	rs9935059	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,33:28:73:0.452:2
chr16	22237273	rs17841292	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,27:28:54:0.500:2
chr16	22260058	rs79637818	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,30:31:60:0.500:2	./.	./.
chr16	22262514	rs2303186	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,33:32:51:0.647:2	0/1:28,27:32:55:0.491:2	0/1:0,14:32:14:1.00:2	0/1:49,40:31:90:0.449:2	0/1:46,30:32:76:0.395:2	0/1:45,34:31:79:0.430:2	./.	./.	./.	0/1:31,29:32:60:0.483:2	0/1:49,36:32:85:0.424:2
chr16	22269867	rs4783453	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:29:35:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,4:28:4:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,23:28:23:1.00:2	0/1:0,35:28:35:1.00:2	0/1:0,24:28:24:1.00:2	0/1:0,46:29:46:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,32:27:32:1.00:2	0/1:0,29:28:29:1.00:2
chr16	22545447	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:16,4:33:20:0.200:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,3:32:14:0.214:2	./.
chr16	22545467	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:18,3:33:21:0.143:2	./.	./.	./.	./.	./.	0/1:18,8:29:26:0.308:2	./.	./.	0/1:11,4:32:15:0.267:2	./.
chr16	22545509	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,3:34:25:0.120:2
chr16	22545525	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,5:31:21:0.238:2	./.	./.	./.	./.	./.
chr16	22545659	rs199752128	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,3:29:7:0.429:2	./.	./.	./.	./.	./.	./.
chr16	22545777	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,3:31:27:0.111:2	./.	./.	./.	./.	./.
chr16	22545865	rs202011711	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:16,3:32:19:0.158:2	./.	0/1:43,5:29:48:0.104:2	./.	./.	./.	./.	./.	./.	./.
chr16	22545897	rs143579045	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,7:28:18:0.389:2	0/1:13,4:31:17:0.235:2	./.	0/1:21,15:26:36:0.417:2	0/1:18,5:29:23:0.217:2	0/1:8,11:27:19:0.579:2	0/1:12,4:23:16:0.250:2	0/1:28,9:27:37:0.243:2	0/1:11,4:27:15:0.267:2	0/1:24,27:28:51:0.529:2	0/1:14,8:30:22:0.364:2
chr16	22546105	rs200797153	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,5:32:190:0.026:2	./.
chr16	22546129	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,18:31:175:0.103:2	./.	./.	./.	./.	./.
chr16	22546910	rs199922936	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,4:24:18:0.222:2	./.	0/1:12,5:30:17:0.294:2	./.	./.	./.
chr16	22547606	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.
chr16	22826339	rs208951	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,46:32:90:0.511:2	0/1:1,48:31:49:0.980:2	0/1:27,34:32:61:0.557:2	./.	0/1:43,49:32:92:0.533:2	0/1:52,32:31:84:0.381:2	./.	./.
chr16	22926511	rs35682499	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,7:30:12:0.583:2	0/1:49,39:29:88:0.443:2	./.	./.	./.	./.	./.	./.	0/1:27,35:29:62:0.565:2
chr16	23079621	rs35541113	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,39:32:89:0.438:2	./.	./.
chr16	23080634	rs10083789	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:31:38:1.00:2	0/1:0,20:32:20:1.00:2	0/1:5,5:30:10:0.500:2	0/1:23,19:33:42:0.452:2	0/1:14,29:32:43:0.674:2	./.	./.	0/1:31,32:30:63:0.508:2	./.	./.	0/1:0,43:32:43:1.00:2
chr16	23093816	rs35188058	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,44:33:130:0.338:2	./.	./.
chr16	23098422	rs13339649	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,41:32:105:0.390:2	./.	0/1:65,51:32:116:0.440:2	./.	0/1:72,39:32:111:0.351:2	0/1:58,49:33:107:0.458:2	0/1:0,84:33:84:1.00:2	./.
chr16	23200761	rs5734	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,7:29:19:0.368:2	./.	0/1:14,11:30:25:0.440:2	./.	0/1:13,7:30:20:0.350:2	0/1:14,17:31:31:0.548:2	0/1:0,17:30:17:1.00:2	./.
chr16	23200783	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,5:30:24:0.208:2	./.	./.	./.	./.	./.	./.
chr16	23200848	rs5735	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,25:33:49:0.521:2	./.	0/1:32,23:31:55:0.418:2	./.	0/1:19,25:31:44:0.568:2	0/1:28,36:34:64:0.563:2	0/1:0,40:32:40:1.00:2	./.
chr16	23200923	rs5737	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,50:30:99:0.505:2	./.	./.	./.	./.	./.	./.	./.
chr16	23203690	rs5739	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,57:32:105:0.543:2	./.	./.	./.	./.	./.	./.	./.
chr16	23224416	rs13306653	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,70:31:72:0.986:2	0/1:0,36:31:36:1.00:2	./.	./.	0/1:29,24:31:53:0.453:2	./.	0/1:39,22:31:61:0.361:2	./.	./.	./.	0/1:0,52:32:52:1.00:2
chr16	23226787	rs5723	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,10:31:10:1.00:2	0/1:0,7:31:7:1.00:2	./.	./.	./.	./.	0/1:1,12:33:13:0.923:2	./.	./.	./.	0/1:0,4:32:4:1.00:2
chr16	23360199	rs238547	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,27:29:81:0.333:2	0/1:32,21:28:53:0.396:2	0/1:0,6:29:6:1.00:2	0/1:96,66:28:162:0.407:2	0/1:81,82:29:163:0.503:2	0/1:0,137:29:137:1.00:2	./.	0/1:77,72:28:150:0.483:2	0/1:79,70:30:149:0.470:2	./.	0/1:51,53:29:105:0.510:2
chr16	23379279	rs250563	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,53:31:127:0.417:2	./.	./.	./.	./.	./.
chr16	23403744	rs8057712	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,50:28:92:0.543:2
chr16	23409402	rs145412851	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,48:31:88:0.545:2	0/1:30,40:31:70:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	23409440	rs16940094	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,46:32:96:0.479:2
chr16	23409457	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:32:104:0.038:2	./.
chr16	23430137	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,4:30:78:0.051:2	./.	./.	./.	./.	./.	./.	./.
chr16	23445986	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:33:109:0.037:2
chr16	23456398	rs149163316	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,64:31:142:0.454:2
chr16	23480294	rs35347972	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,21:31:49:0.429:2	0/1:15,12:33:27:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	23489711	rs1135045	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,66:31:66:1.00:2	0/1:0,37:32:37:1.00:2	./.	0/1:48,25:33:73:0.342:2	0/1:0,89:32:89:1.00:2	0/1:49,35:32:84:0.417:2	0/1:0,114:32:114:1.00:2	0/1:0,121:32:121:1.00:2	0/1:0,83:33:83:1.00:2	0/1:0,77:31:77:1.00:2	./.
chr16	23536570	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:197:0.020:2	./.	./.
chr16	23536684	rs6497671	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,110:33:110:1.00:2	0/1:0,80:32:80:1.00:2	0/1:8,10:33:18:0.556:2	0/1:53,56:33:109:0.514:2	0/1:0,91:32:91:1.00:2	0/1:51,53:32:105:0.510:2	0/1:0,92:32:92:1.00:2	0/1:0,144:32:144:1.00:2	0/1:0,155:34:155:1.00:2	0/1:1,119:33:120:0.992:2	0/1:85,56:33:141:0.397:2
chr16	23544000	rs187662524	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,34:32:74:0.459:2	./.
chr16	23546561	rs2073951	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:0,25:32:25:1.00:2	./.	0/1:40,38:32:78:0.487:2	0/1:0,89:31:89:1.00:2	0/1:32,32:32:64:0.500:2	0/1:0,78:31:78:1.00:2	0/1:0,76:31:76:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,31:32:31:1.00:2	0/1:20,15:32:35:0.429:2
chr16	23563501	rs7187920	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:33:70:1.00:2	0/1:0,41:33:41:1.00:2	0/1:1,6:32:7:0.857:2	0/1:48,48:32:96:0.500:2	0/1:0,105:32:105:1.00:2	0/1:51,55:32:106:0.519:2	0/1:0,132:32:132:1.00:2	0/1:0,107:32:107:1.00:2	0/1:2,114:34:116:0.983:2	0/1:0,86:33:86:1.00:2	./.
chr16	23607504	rs466719	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:34:6:0.667:2	0/1:8,10:31:18:0.556:2	./.	0/1:8,10:33:18:0.556:2	./.	./.	./.	./.	./.
chr16	23607510	rs141475669	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:32:4:0.750:2	0/1:4,4:32:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	23619235	rs45516100	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:28:11:0.545:2	./.	./.	./.	0/1:63,72:30:135:0.533:2	./.	./.	./.	./.
chr16	23634293	rs45551636	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:31:12:0.417:2	./.	./.	./.	0/1:64,45:31:109:0.413:2	./.	./.	./.	./.
chr16	23641461	rs45532440	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,18:33:30:0.600:2	./.	./.	./.	./.
chr16	23646191	rs152451	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:31:5:0.800:2	0/1:31,31:31:62:0.500:2	./.	0/1:34,19:31:53:0.358:2	0/1:31,8:30:39:0.205:2	./.	./.	./.	./.
chr16	23672560	rs11545871	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,30:32:51:0.588:2	./.	./.	./.	0/1:110,87:32:197:0.442:2	./.	./.	./.	0/1:101,92:32:193:0.477:2
chr16	23677006	rs35586	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,31:31:61:0.508:2	./.	0/1:21,24:29:45:0.533:2	./.	./.	./.	./.	0/1:22,34:29:56:0.607:2
chr16	23690505	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,4:31:91:0.044:2	./.	./.	./.	./.	./.	./.	./.
chr16	23703368	rs56029718	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,11:26:26:0.423:2
chr16	23711925	rs26764	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,34:31:66:0.515:2	./.	0/1:0,49:31:49:1.00:2	./.	./.	./.	./.	0/1:0,50:31:50:1.00:2
chr16	23718102	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:15:14:0.429:2	./.	./.	0/1:32,13:9:45:0.289:2	./.	./.	0/1:29,11:11:41:0.275:2	./.	./.	./.
chr16	23722280	rs56342512	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,63:33:144:0.438:2	./.
chr16	23847575	rs75964872	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,57:32:129:0.442:2	0/1:69,68:32:137:0.496:2	./.	0/1:35,25:31:60:0.417:2	./.
chr16	23847617	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:31:129:0.031:2	./.	./.
chr16	23848762	rs3729883	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,36:32:36:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,5:30:5:1.00:2	./.	0/1:0,27:30:27:1.00:2	0/1:17,32:29:50:0.653:2	./.	0/1:26,21:31:47:0.447:2	0/1:29,16:32:45:0.356:2	0/1:21,23:31:44:0.523:2	./.
chr16	24104188	rs3729896	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,33:32:71:0.465:2	./.	./.	./.	./.	./.	./.	./.
chr16	24166130	rs432998	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,7:29:14:0.500:2	0/1:61,66:28:127:0.520:2	0/1:63,58:28:121:0.479:2	0/1:65,59:28:124:0.476:2	0/1:3,125:27:128:0.977:2	0/1:3,130:29:133:0.977:2	0/1:1,126:29:127:0.992:2	0/1:0,106:28:106:1.00:2	./.
chr16	24202458	rs3729904	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,33:31:64:0.516:2	0/1:21,23:31:44:0.523:2	./.	0/1:54,38:30:92:0.413:2	0/1:25,33:30:58:0.569:2	./.	0/1:2,67:30:69:0.971:2	./.	0/1:0,60:31:60:1.00:2	0/1:0,57:31:57:1.00:2	./.
chr16	24373157	rs12928078	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:33:11:0.364:2	./.	./.	./.	./.	0/1:0,9:34:9:1.00:2	0/1:7,9:31:16:0.563:2	./.
chr16	24572962	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:32:80:0.050:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	24573248	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:31:110:0.036:2	./.	./.
chr16	24580478	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:28:73:0.055:2	./.	./.	./.
chr16	24580885	rs35016549	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,6:33:15:0.400:2	./.
chr16	24582299	rs7196736	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,50:31:115:0.435:2	./.	./.
chr16	24582872	rs141394682	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,17:31:33:0.515:2	./.	./.	./.
chr16	24583406	rs7593	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,30:28:30:1.00:2	0/1:1,24:29:25:0.960:2	./.	./.	./.	0/1:1,41:28:42:0.976:2	./.	0/1:35,13:31:48:0.271:2	0/1:39,21:29:60:0.350:2	./.	./.
chr16	24788434	rs11644562	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,5:29:12:0.417:2	./.
chr16	24788549	rs117821015	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,41:31:88:0.466:2	./.	./.	./.	./.	./.
chr16	24788645	rs11639856	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,14:31:35:0.400:2	./.	0/1:17,17:32:34:0.500:2	0/1:12,16:31:28:0.571:2	./.
chr16	24801737	rs6497759	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,11:31:18:0.611:2	./.	./.	./.	0/1:40,42:31:82:0.512:2	./.	0/1:56,52:32:108:0.481:2	0/1:32,28:32:60:0.467:2	./.
chr16	24801979	rs13336754	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,36:30:84:0.429:2	0/1:17,28:31:45:0.622:2	0/1:4,7:31:11:0.636:2	0/1:46,46:31:93:0.500:2	0/1:68,56:30:124:0.452:2	0/1:56,57:30:114:0.504:2	./.	0/1:90,57:30:147:0.388:2	./.	./.	./.
chr16	24802325	rs3803716	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	0/1:13,7:31:20:0.350:2	./.	0/1:9,12:32:21:0.571:2	0/1:7,6:32:13:0.462:2	./.
chr16	24802331	rs72770409	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,11:31:20:0.550:2	./.	./.	./.	0/1:11,11:30:22:0.500:2	./.	./.	./.
chr16	24826541	rs202112925	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,20:11:94:0.213:2	./.	./.	0/1:55,9:20:64:0.141:2	0/1:96,15:12:113:0.135:2
chr16	24834233	rs2303085	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:47,42:31:89:0.472:2	0/1:15,22:32:37:0.595:2	./.	0/1:63,58:32:121:0.479:2	./.	./.	./.	./.	./.	./.	./.
chr16	24873910	rs192418816	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:27:72:0.056:2
chr16	24873994	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,6:32:124:0.048:2	./.	./.
chr16	24888593	rs8052587	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,73:29:155:0.471:2	0/1:95,100:29:195:0.513:2	./.	./.	0/1:59,50:30:109:0.459:2	0/1:66,79:29:145:0.545:2
chr16	24888646	rs11074656	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,35:33:86:0.407:2	0/1:34,22:33:56:0.393:2	0/1:8,5:33:13:0.385:2	0/1:69,60:33:129:0.465:2	0/1:1,138:32:139:0.993:2	./.	./.	0/1:89,87:33:176:0.494:2	./.	./.	0/1:84,55:33:139:0.396:2
chr16	24888677	rs9932619	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,69:32:144:0.479:2	./.	./.	./.
chr16	24895361	rs72770465	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,22:30:56:0.393:2	./.	./.	0/1:41,32:30:73:0.438:2	0/1:31,27:30:58:0.466:2
chr16	24902194	rs274081	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:32:23:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,45:29:45:1.00:2	0/1:1,34:31:35:0.971:2	0/1:0,46:32:46:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,30:31:30:1.00:2
chr16	24902299	rs35993597	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,45:32:86:0.523:2	./.	./.	./.	./.	./.
chr16	24918048	rs17772929	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,18:31:49:0.367:2	0/1:17,6:32:23:0.261:2	0/1:0,10:32:10:1.00:2	0/1:47,29:31:76:0.382:2	0/1:43,21:31:64:0.328:2	0/1:31,23:32:54:0.426:2	0/1:45,30:32:75:0.400:2	0/1:42,27:32:69:0.391:2	./.	./.	0/1:0,39:31:39:1.00:2
chr16	24950880	rs78457529	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,35:31:77:0.455:2	./.	./.	./.	./.	./.	./.	./.
chr16	24955183	rs17624477	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,25:32:71:0.352:2	./.	./.	./.	0/1:36,36:32:72:0.500:2	./.	./.	./.
chr16	24971266	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,4:31:143:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr16	25182032	rs9630611	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,65:33:148:0.439:2	./.	./.	./.	./.
chr16	25238420	rs117255669	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,103:30:150:0.691:2	./.	./.
chr16	25239805	rs2287798	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:43,15:32:58:0.259:2	0/1:18,16:32:34:0.471:2	./.	./.	0/1:48,27:32:75:0.360:2	0/1:0,71:32:71:1.00:2	0/1:44,46:32:90:0.511:2	./.	0/1:33,38:33:71:0.535:2	0/1:0,58:33:58:1.00:2	0/1:37,47:31:84:0.560:2
chr16	25239809	rs111840156	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,40:32:87:0.460:2	./.	./.	./.
chr16	25251416	rs373467055	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,17:33:49:0.347:2	./.	./.
chr16	25255242	rs8059494	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,47:31:111:0.423:2	0/1:77,67:31:144:0.465:2	./.	./.	0/1:82,62:32:144:0.431:2	0/1:73,57:31:130:0.438:2	./.
chr16	25255506	rs11642611	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:25,24:32:49:0.490:2	0/1:12,10:32:22:0.455:2	./.	./.	./.	./.	./.	./.	./.	0/1:35,25:31:60:0.417:2	0/1:46,26:31:72:0.361:2
chr16	25258035	rs11649280	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:49,60:33:109:0.550:2	0/1:29,30:32:59:0.508:2	./.	./.	./.	./.	./.	./.	./.	0/1:48,41:32:89:0.461:2	0/1:62,52:31:114:0.456:2
chr16	25258655	rs61742723	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,17:31:45:0.378:2	0/1:50,29:31:79:0.367:2
chr16	25263278	rs2112811	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:35,27:33:62:0.435:2	0/1:22,12:32:34:0.353:2	./.	./.	./.	./.	./.	./.	./.	0/1:27,50:32:77:0.649:2	0/1:46,54:32:100:0.540:2
chr16	25266547	rs113273135	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,39:31:93:0.419:2	./.	./.	./.	./.	./.
chr16	25268368	rs4787310	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:34,21:30:55:0.382:2	0/1:30,10:31:40:0.250:2	./.	./.	0/1:2,46:31:48:0.958:2	0/1:1,50:30:51:0.980:2	./.	./.	0/1:42,22:31:64:0.344:2	0/1:0,40:30:40:1.00:2	0/1:37,33:30:70:0.471:2
chr16	27078462	rs114324679	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,29:29:53:0.547:2	./.	./.	./.	./.	./.	./.	./.
chr16	27078545	rs185409807	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,22:30:43:0.512:2	./.	./.	./.	./.	./.	./.	./.
chr16	27078547	rs114049498	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,22:32:45:0.489:2	./.	./.	./.	./.	./.	./.	./.
chr16	27078636	rs146897787	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,12:32:21:0.571:2	./.	./.	./.	./.	./.	./.
chr16	27078705	rs115398674	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,9:33:22:0.409:2	./.	./.	./.	./.	./.	./.	./.
chr16	27078867	rs12446622	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:30:16:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,2:34:2:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,3:34:3:1.00:2
chr16	27078928	rs113551573	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,9:30:20:0.450:2	./.	./.	./.	./.	./.	./.	./.
chr16	27078939	rs114570071	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,15:25:27:0.556:2	./.	./.	./.	./.	./.	./.	./.
chr16	27079203	rs115982912	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,41:28:83:0.494:2	./.	./.	./.	./.	./.	./.	./.
chr16	27079413	rs115695246	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,31:29:73:0.425:2	./.	./.	./.	./.	./.	./.	./.
chr16	27079540	rs191967871	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,29:31:73:0.397:2	./.	./.	./.	./.	./.	./.	./.
chr16	27079745	rs115622223	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,29:32:91:0.319:2	./.	./.	./.	./.	./.	./.	./.
chr16	27079746	rs116780507	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,29:31:91:0.319:2	./.	./.	./.	./.	./.	./.	./.
chr16	27079791	rs114407423	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,34:31:105:0.324:2	./.	./.	./.	./.	./.	./.	./.
chr16	27079861	rs114065546	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,24:32:91:0.264:2	./.	./.	./.	./.	./.	./.	./.
chr16	27079941	rs114167428	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,23:29:56:0.411:2	./.	./.	./.	./.	./.	./.	./.
chr16	27079957	rs2280183	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,12:31:40:0.300:2	0/1:11,9:31:20:0.450:2	./.	./.	./.	./.	./.	./.	0/1:26,25:34:51:0.490:2	0/1:25,13:31:38:0.342:2	0/1:20,18:33:38:0.474:2
chr16	27080062	rs141209928	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:30:13:0.462:2	./.	./.	./.	./.	./.	./.	./.
chr16	27080169	rs115791444	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,22:33:42:0.524:2	./.	./.	./.	./.	./.	./.	./.
chr16	27080285	rs116245283	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,35:31:79:0.443:2	./.	./.	./.	./.	./.	./.	./.
chr16	27080306	rs11823	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,32:32:68:0.471:2	0/1:28,11:31:39:0.282:2	0/1:0,15:30:15:1.00:2	0/1:38,41:30:79:0.519:2	0/1:2,76:31:78:0.974:2	0/1:0,95:31:95:1.00:2	0/1:0,101:31:101:1.00:2	0/1:0,111:31:111:1.00:2	0/1:41,31:32:73:0.431:2	0/1:54,25:32:79:0.316:2	0/1:47,52:30:99:0.525:2
chr16	27231740	rs34577370	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:36,38:31:74:0.514:2	0/1:24,21:32:45:0.467:2	./.	0/1:67,48:32:115:0.417:2	./.	./.	0/1:56,47:33:103:0.456:2	./.	0/1:46,51:34:97:0.526:2	0/1:48,28:32:76:0.368:2	./.
chr16	27236468	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:32:138:0.029:2	./.	./.	./.
chr16	27238110	rs1127228	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,46:30:103:0.447:2	0/1:41,37:31:78:0.474:2	./.	./.	./.	./.	./.
chr16	27246617	rs17856580	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,17:32:37:0.459:2	./.	./.	0/1:19,22:31:41:0.537:2	0/1:13,27:32:40:0.675:2	0/1:29,20:33:49:0.408:2	./.	./.
chr16	27356203	rs1805010	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:46,26:32:72:0.361:2	0/1:23,18:32:41:0.439:2	./.	./.	0/1:1,147:31:148:0.993:2	0/1:36,53:32:89:0.596:2	0/1:0,119:31:119:1.00:2	./.	./.	./.	./.
chr16	27356333	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,11:30:16:0.688:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	27357927	rs2234895	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,10:30:23:0.435:2	./.	0/1:12,12:30:24:0.500:2	./.	./.	./.	./.
chr16	27366296	rs3024632	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,20:33:43:0.465:2	./.	0/1:19,19:32:38:0.500:2	./.	./.	./.	./.
chr16	27373612	rs2234897	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,50:32:102:0.490:2	./.	./.	./.	./.	./.	./.	./.
chr16	27373872	rs1805011	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,45:28:48:0.938:2	./.	./.	./.
chr16	27373915	rs2234898	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,46:31:51:0.902:2	./.	./.	./.
chr16	27373964	rs1805012	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,29:29:71:0.408:2	./.	./.	./.
chr16	27373966	rs2234899	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,15:31:41:0.366:2	./.	./.	./.	./.	./.	./.	./.
chr16	27373972	rs2234900	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,16:32:40:0.400:2	./.	./.	./.	0/1:5,67:32:72:0.931:2	./.	./.	./.
chr16	27373980	rs1805013	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,21:31:64:0.328:2	./.	./.	./.	./.	./.	./.
chr16	27374180	rs1805015	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,21:33:43:0.488:2	0/1:42,34:32:76:0.447:2	./.	./.	0/1:1,57:31:58:0.983:2	./.	./.	./.
chr16	27374400	rs1801275	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,32:29:33:0.970:2	0/1:17,28:30:45:0.622:2	./.	./.	0/1:0,29:29:29:1.00:2	./.	./.	./.
chr16	27374696	rs3024678	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,16:33:35:0.457:2
chr16	27374927	rs1805016	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,14:30:27:0.519:2	0/1:22,22:31:44:0.500:2	./.	./.	./.	./.	./.	./.
chr16	27375029	rs1805014	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:32:9:0.667:2	./.	./.	./.	./.	./.	./.	./.
chr16	27375070	rs3024679	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,12:29:28:0.429:2	./.	./.	./.
chr16	27445711	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,3:31:31:0.097:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	27456529	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:150,4:33:154:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr16	27460437	rs3093386	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,29:31:65:0.446:2	./.	./.	./.
chr16	27472772	rs2228248	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,41:31:41:1.00:2	./.	./.	0/1:22,17:31:39:0.436:2	./.	./.	./.	./.
chr16	27474910	rs12919017	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,47:32:47:1.00:2	./.	./.	0/1:18,18:32:36:0.500:2	./.	./.	./.	./.
chr16	27689137	rs147094899	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,33:30:75:0.440:2	./.	./.	./.
chr16	27689168	rs184205762	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,47:32:81:0.580:2	./.	./.	./.	./.
chr16	27692835	rs12923861	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,26:33:26:1.00:2	./.	./.	0/1:4,11:30:15:0.733:2	0/1:18,17:32:35:0.486:2	./.	./.	./.
chr16	27720201	rs12930355	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,69:31:70:0.986:2	./.	./.	0/1:34,26:31:60:0.433:2	./.	./.	./.	./.
chr16	27752135	rs12447120	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,55:30:56:0.982:2	./.	./.	0/1:29,20:30:49:0.408:2	0/1:43,28:30:71:0.394:2	./.	./.	./.
chr16	27761040	rs61734902	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,30:32:69:0.435:2
chr16	27763110	rs2289875	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,66:29:163:0.405:2	./.	./.	./.
chr16	27772880	rs61742593	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,5:32:15:0.333:2	./.	./.	./.	./.	./.
chr16	27772901	rs4787984	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,17:28:17:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,12:29:12:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,17:29:17:1.00:2	0/1:0,24:30:24:1.00:2	0/1:1,12:31:13:0.923:2	0/1:0,10:32:10:1.00:2	0/1:0,23:31:24:1.00:2
chr16	27781309	rs11644502	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,14:33:42:0.333:2	0/1:13,5:33:18:0.278:2	./.	./.	./.	./.	./.	./.	0/1:21,24:33:45:0.533:2	./.	./.
chr16	27789259	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,70:31:147:0.476:2	./.	./.	./.
chr16	27974487	rs2051743	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:29:60:1.00:2	0/1:1,44:29:45:0.978:2	0/1:0,13:29:13:1.00:2	0/1:47,42:30:89:0.472:2	0/1:0,68:30:68:1.00:2	0/1:60,34:30:94:0.362:2	0/1:1,89:30:91:0.989:2	./.	0/1:0,109:31:109:1.00:2	0/1:47,31:29:78:0.397:2	0/1:55,48:29:105:0.466:2
chr16	28123178	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2	./.	./.	./.	./.
chr16	28123226	rs205384	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:64,47:32:111:0.423:2	0/1:40,25:32:65:0.385:2	./.	./.	0/1:73,75:31:149:0.507:2	0/1:76,68:30:144:0.472:2	./.	0/1:97,79:30:176:0.449:2	./.	./.	0/1:0,141:31:141:1.00:2
chr16	28167488	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,6:33:160:0.038:2	./.	./.	./.	./.
chr16	28222668	rs76406515	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,114:32:184:0.620:2	./.	./.	./.	./.
chr16	28328916	rs113394773	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,53:31:134:0.396:2	0/1:66,64:31:130:0.492:2	./.	./.	./.	./.	0/1:80,54:31:134:0.403:2
chr16	28394559	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,48:32:193:0.249:2
chr16	28399451	rs201261076	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,39:31:183:0.214:2	./.	0/1:136,46:31:182:0.253:2	./.	./.
chr16	28399457	rs200858669	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,44:34:185:0.238:2	./.	0/1:131,52:34:183:0.284:2	./.	./.
chr16	28401628	rs201553780	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,42:30:198:0.213:2	./.	./.	./.	./.
chr16	28403394	rs374727655	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,50:31:193:0.259:2	./.	./.	./.	./.
chr16	28412562	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,37:31:195:0.190:2	./.	./.	./.	./.
chr16	28412700	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,52:32:193:0.269:2	./.	./.	./.	./.	./.
chr16	28481769	rs371571090	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,55:28:187:0.294:2	./.	./.	./.	./.
chr16	28488943	rs77595156	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,20:31:44:0.455:2	./.	./.	./.	./.
chr16	28489097	rs145340637	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,29:30:54:0.537:2	./.
chr16	28495346	rs73533466	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,12:32:32:0.375:2	./.	./.	./.
chr16	28499037	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:32:89:0.045:2	./.	./.	./.	./.	./.
chr16	28499936	rs145520962	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,76:29:147:0.521:2	./.	./.	./.
chr16	28506428	rs151233	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:17,14:31:31:0.452:2	0/1:7,8:32:17:0.533:2	./.	./.	./.	./.	./.	0/1:9,9:29:18:0.500:2	0/1:11,10:32:21:0.476:2	0/1:12,11:31:24:0.478:2	./.
chr16	28506544	rs28460286	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,29:29:60:0.483:2	./.	./.	./.	./.	./.	./.	./.
chr16	28506611	rs61748351	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,31:30:78:0.397:2	./.	./.	./.
chr16	28506872	rs149271	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,6:32:14:0.429:2	0/1:40,32:32:72:0.444:2	0/1:2,98:31:100:0.980:2	0/1:31,31:31:62:0.500:2	0/1:42,33:32:75:0.440:2	./.	./.	./.	./.
chr16	28506882	rs28576169	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,32:31:70:0.457:2	./.	./.	./.	./.	./.	./.	./.
chr16	28507006	rs113462555	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,12:29:40:0.300:2	./.	./.	./.	./.	./.	./.	./.
chr16	28507245	rs151136790	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,36:32:84:0.429:2
chr16	28507644	rs180743	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:32:7:0.571:2	0/1:17,16:33:33:0.485:2	0/1:0,21:33:21:1.00:2	0/1:26,13:30:39:0.333:2	0/1:17,15:32:32:0.469:2	./.	./.	./.	./.
chr16	28508048	rs180744	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,6:32:14:0.429:2	0/1:84,82:33:166:0.494:2	0/1:0,160:32:160:1.00:2	0/1:100,85:32:185:0.459:2	0/1:98,76:32:175:0.437:2	0/1:84,93:32:177:0.525:2	./.	./.	./.
chr16	28508069	rs151174	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:27:13:0.308:2	./.	0/1:2,124:30:126:0.984:2	0/1:89,71:29:161:0.444:2	0/1:74,75:29:150:0.503:2	./.	./.	./.	./.
chr16	28508183	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,4:32:37:0.108:2	./.	./.	./.	./.
chr16	28508413	rs61753940	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,7:29:22:0.318:2	0/1:23,7:28:30:0.233:2	./.	./.	./.
chr16	28508447	rs40831	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,11:29:18:0.611:2	0/1:1,20:25:21:0.952:2	0/1:15,6:28:21:0.286:2	0/1:15,9:27:24:0.375:2	0/1:21,7:27:28:0.250:2	0/1:10,12:28:22:0.545:2	./.	./.
chr16	28508716	rs40832	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:28:71:1.00:2	0/1:0,40:29:40:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,86:30:86:1.00:2	0/1:0,71:29:71:1.00:2	0/1:0,77:29:77:1.00:2	0/1:1,87:29:88:0.989:2	0/1:0,94:30:95:1.00:2	0/1:0,70:31:70:1.00:2	0/1:0,77:30:77:1.00:2	0/1:0,77:29:77:1.00:2
chr16	28511229	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.
chr16	28513403	rs181206	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,17:29:38:0.447:2	0/1:26,19:31:45:0.422:2	./.	./.	./.	./.	./.
chr16	28515228	rs17855750	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,26:31:46:0.565:2	./.
chr16	28549508	rs151227	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:19,23:32:42:0.548:2	0/1:18,20:32:38:0.526:2	./.	./.	./.	./.	./.	./.	./.	0/1:34,18:32:53:0.346:2	./.
chr16	28602991	rs11401	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,12:33:36:0.333:2	0/1:21,8:30:29:0.276:2	./.	./.	0/1:43,28:32:71:0.394:2	0/1:39,49:32:88:0.557:2	./.	./.	./.	0/1:46,35:32:81:0.432:2	./.
chr16	28603012	rs3194168	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:20,9:33:29:0.310:2	0/1:25,8:31:33:0.242:2	./.	./.	./.	./.	./.	./.	./.	0/1:35,27:32:62:0.435:2	./.
chr16	28603393	rs27742	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:32:81:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,96:33:96:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,115:32:115:1.00:2	0/1:1,130:32:131:0.992:2	0/1:1,106:32:107:0.991:2	0/1:0,99:32:99:1.00:2	0/1:1,90:31:91:0.989:2	0/1:0,72:32:72:1.00:2
chr16	28603625	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:32:166:0.024:2	./.	./.	./.	./.	./.
chr16	28603628	rs145465524	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:31:169:0.024:2	./.	./.	./.	./.	./.
chr16	28603655	rs1059491	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,7:29:18:0.389:2	./.	0/1:107,65:31:172:0.378:2	./.	0/1:102,48:32:151:0.320:2	./.	./.	./.	./.
chr16	28603686	rs1042041	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,9:32:154:0.058:2	./.	./.	./.	./.	./.
chr16	28603695	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,11:31:151:0.073:2	./.	./.	./.	./.	./.
chr16	28603702	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,11:27:144:0.076:2	./.	./.	./.	./.	./.
chr16	28603714	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,6:30:102:0.059:2	./.	./.	./.	./.	./.	./.
chr16	28603721	rs141581853	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,7:31:85:0.082:2	./.	./.	./.	./.
chr16	28604621	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,4:31:112:0.036:2	./.	./.	./.	./.	./.	./.
chr16	28604854	rs61736765	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:125,5:30:130:0.038:2	./.	./.	./.	./.	./.	./.
chr16	28606941	rs1041982	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,5:30:113:0.044:2	./.	./.	./.	./.	./.
chr16	28606950	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,5:31:89:0.056:2	./.	./.	./.	./.	./.	./.
chr16	28606953	rs1126449	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:30:118:0.034:2	0/1:98,4:31:103:0.039:2	./.	./.	./.	./.
chr16	28606960	rs4987024	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,57:30:122:0.467:2	./.	./.	./.	./.	./.
chr16	28606974	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,5:30:107:0.047:2	./.	./.	./.	./.	./.	./.
chr16	28607196	rs10797300	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:62,38:33:100:0.380:2	0/1:23,31:32:54:0.574:2	./.	./.	./.	./.	./.	./.	./.	0/1:61,45:33:106:0.425:2	./.
chr16	28607228	rs1690407	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,6:30:63:0.095:2	./.	0/1:64,5:29:69:0.072:2	./.	./.	./.	./.
chr16	28607232	rs1136703	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,5:27:67:0.076:2	./.	./.	./.	./.
chr16	28617187	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,11:32:184:0.060:2	./.	./.	./.	./.	./.
chr16	28617413	rs28374453	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:166,26:32:192:0.135:2	0/1:190,6:28:196:0.031:2	0/1:188,4:32:192:0.021:2	./.	./.	./.	0/1:186,5:32:192:0.026:2	./.
chr16	28617448	rs35728980	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2	./.	./.	./.	./.
chr16	28617485	rs1801030	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:32:88:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,18:31:18:1.00:2	0/1:42,110:31:152:0.724:2	0/1:0,94:31:94:1.00:2	0/1:3,120:32:123:0.976:2	0/1:0,103:32:103:1.00:2	0/1:1,138:31:139:0.993:2	0/1:0,190:32:190:1.00:2	0/1:0,111:32:113:1.00:2	0/1:0,170:32:170:1.00:2
chr16	28617507	rs41278160	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,9:30:76:0.118:2	./.	./.	./.	./.	./.	./.
chr16	28617514	rs9282861	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,6:31:17:0.353:2	./.	0/1:34,30:30:64:0.469:2	./.	0/1:41,16:31:57:0.281:2	./.	./.	./.	./.
chr16	28617552	rs3176926	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:32,3:31:35:0.086:2	./.	./.	./.	0/1:61,11:31:72:0.153:2	0/1:23,5:32:28:0.179:2	./.	./.	./.	./.
chr16	28619911	rs1126447	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,4:33:15:0.267:2	./.	0/1:40,75:31:115:0.652:2	0/1:117,66:32:183:0.361:2	0/1:63,38:32:101:0.376:2	./.	./.	./.	./.
chr16	28619920	rs1126446	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,4:34:16:0.250:2	./.	0/1:47,79:31:126:0.627:2	0/1:125,66:32:192:0.346:2	0/1:62,40:31:103:0.392:2	./.	./.	./.	./.
chr16	28620066	rs56208725	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:31:148:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,7:31:170:0.041:2	./.
chr16	28620120	rs34513973	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:143,47:30:190:0.247:2	0/1:136,53:30:189:0.280:2	./.	./.	./.	./.	./.
chr16	28631393	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:30:103:0.039:2	./.	./.	./.	./.	./.
chr16	28631438	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:32:124:0.032:2	./.	./.	./.	./.	./.
chr16	28711743	rs186532734	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:26:5:0.600:2
chr16	28712511	rs369674409	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,7:25:9:0.875:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:27:6:0.500:2
chr16	28712612	rs201642204	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,79:31:191:0.414:2	./.	./.	./.	./.
chr16	28712802	rs201315359	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,41:33:190:0.216:2	./.	./.	./.	./.	./.
chr16	28725247	rs199616771	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,34:32:187:0.184:2	./.	./.	./.	./.	./.
chr16	28725385	rs201632370	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,47:31:197:0.239:2	./.	./.	./.	./.
chr16	28734483	rs138995833	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,32:28:191:0.168:2	./.	./.	./.	./.
chr16	28734554	rs145508642	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,33:32:198:0.167:2	./.	./.	./.	./.
chr16	28736317	rs202060458	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,40:30:196:0.204:2	./.	./.	./.	./.
chr16	28738488	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,25:33:123:0.203:2	./.	0/1:118,29:34:147:0.197:2	./.	./.
chr16	28738494	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,27:29:135:0.200:2	./.	0/1:126,35:31:161:0.217:2	./.	./.
chr16	28738553	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,20:10:122:0.164:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	28743393	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,50:32:186:0.269:2
chr16	28842311	rs4344749	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,7:33:7:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,3:33:3:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,9:33:9:1.00:2
chr16	28844448	rs75223378	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,8:32:13:0.615:2	./.	./.	./.	./.
chr16	28844808	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,86:32:168:0.512:2	0/1:51,40:32:91:0.440:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	28845448	rs75127228	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,18:31:32:0.563:2	./.	./.	./.	./.
chr16	28848111	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,4:31:63:0.063:2	./.	./.	./.	./.	./.	./.
chr16	28883201	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,7:19:78:0.091:2	./.	./.	./.	./.	0/1:68,8:19:76:0.105:2	./.	0/1:74,9:16:83:0.108:2
chr16	28883215	.	G	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,8:17:86:0.093:2	0/1:61,6:19:67:0.090:2	./.	0/1:86,9:16:95:0.095:2	0/1:60,7:19:67:0.104:2	0/1:52,8:20:60:0.133:2	0/1:67,12:18:79:0.152:2
chr16	28883241	rs7498665	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,46:32:101:0.455:2	0/1:33,24:32:57:0.421:2	0/1:42,34:31:76:0.447:2	./.	./.	./.	0/1:32,46:31:78:0.590:2
chr16	28884002	rs371836089	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:169,5:31:176:0.029:2	./.	./.	./.	./.	./.	./.
chr16	28890434	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,4:30:69:0.058:2	./.	./.	./.	./.	./.	./.
chr16	28893898	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:35:132:0.030:2	./.	./.	./.
chr16	28898793	rs6565259	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:30:9:0.556:2	./.	./.	0/1:49,36:30:85:0.424:2	0/1:50,53:30:104:0.515:2	./.	./.	./.	0/1:34,30:30:64:0.469:2
chr16	28909627	rs114675305	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,20:32:39:0.513:2	./.	./.	./.	./.
chr16	28909720	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,3:34:42:0.071:2	./.	./.	./.	./.
chr16	28911946	rs151309999	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,30:31:61:0.492:2	./.	./.	./.	./.	./.
chr16	28915527	rs10499	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:31:53:1.00:2	0/1:0,37:30:37:1.00:2	0/1:9,10:32:19:0.526:2	0/1:0,108:31:108:1.00:2	0/1:0,109:31:109:1.00:2	./.	0/1:0,115:31:115:1.00:2	0/1:0,101:31:102:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,74:31:74:1.00:2	0/1:37,50:30:87:0.575:2
chr16	28919991	rs192852294	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,40:29:81:0.494:2	./.	./.	./.	./.	./.	./.	./.
chr16	28925731	rs74014814	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,50:31:92:0.543:2	./.	./.	./.	./.
chr16	28925740	rs78381506	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,70:30:142:0.493:2	./.	./.	./.
chr16	28926019	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,6:30:93:0.065:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	28944396	rs2904880	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,12:32:12:1.00:2	0/1:0,17:29:17:1.00:2	./.	0/1:0,11:29:11:1.00:2	0/1:0,24:33:24:1.00:2	0/1:5,12:32:17:0.706:2	0/1:0,17:33:17:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,9:31:9:1.00:2	0/1:14,12:31:26:0.462:2
chr16	28944700	rs35979293	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,60:32:60:1.00:2	./.	./.	0/1:39,37:31:76:0.487:2	0/1:47,36:31:83:0.434:2	./.	./.	./.
chr16	28950051	rs34763945	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,19:29:32:0.594:2	./.
chr16	28962429	rs7201257	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,14:32:18:0.778:2	./.	./.	./.
chr16	28993297	rs201490253	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:33:113:0.035:2	./.
chr16	28993369	rs61747536	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,30:32:70:0.429:2	./.	./.	./.
chr16	28997997	rs1131543	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:39,22:32:61:0.361:2	0/1:20,14:30:34:0.412:2	0/1:4,8:29:12:0.667:2	./.	0/1:0,112:32:112:1.00:2	./.	./.	./.	0/1:1,97:33:98:0.990:2	0/1:2,73:33:75:0.973:2	0/1:40,30:30:70:0.429:2
chr16	28998139	.	A	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:41,12:13:53:0.226:2	./.	./.	./.	0/1:81,18:16:99:0.182:2	0/1:59,13:17:72:0.181:2	0/1:87,13:15:100:0.130:2	0/1:74,20:17:94:0.213:2	./.	0/1:65,13:14:78:0.167:2	0/1:59,7:18:66:0.106:2
chr16	29465412	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,27:32:127:0.213:2	./.	./.	./.	./.	./.	./.	./.
chr16	29472811	rs150339073	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:25,122:32:147:0.830:2	0/1:20,86:32:106:0.811:2	0/1:17,17:33:34:0.500:2	./.	./.	0/1:120,70:33:190:0.368:2	./.	./.	0/1:137,58:33:195:0.297:2	0/1:137,57:32:194:0.294:2	0/1:148,42:31:190:0.221:2
chr16	29474701	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,26:32:189:0.138:2	./.	./.	./.
chr16	29475523	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,25:30:195:0.128:2	./.	./.	./.
chr16	29475524	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:144,12:31:156:0.077:2	./.	0/1:187,7:30:194:0.036:2	0/1:147,48:30:195:0.246:2	./.	./.	./.
chr16	29475531	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:166,11:30:177:0.062:2	./.	./.	./.	./.	./.	./.
chr16	29475544	.	A	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:187,11:28:198:0.056:2	0/1:173,25:29:198:0.126:2	0/1:165,31:29:196:0.158:2	0/1:186,11:27:197:0.056:2	0/1:191,7:26:198:0.035:2	0/1:177,19:29:197:0.097:2	0/1:186,12:25:198:0.061:2	0/1:186,9:27:195:0.046:2
chr16	29475625	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,6:31:154:0.039:2
chr16	29475851	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,17:32:176:0.097:2	./.	./.	./.	./.	./.
chr16	29675928	rs1050881	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.
chr16	29676021	rs367572506	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:28:16:0.533:2	./.	./.	./.	./.	./.	./.	./.
chr16	29676751	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:128,4:31:132:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr16	29677841	rs11574558	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,6:27:12:0.500:2	0/1:15,4:28:19:0.211:2	./.	./.	0/1:1,8:23:9:0.889:2	./.	./.
chr16	29677843	rs11574559	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,7:28:12:0.583:2	0/1:14,5:29:19:0.263:2	./.	0/1:26,9:30:35:0.257:2	0/1:1,8:27:9:0.889:2	./.	./.
chr16	29677845	rs11574560	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,4:27:34:0.118:2	0/1:5,7:29:12:0.583:2	0/1:2,14:28:17:0.875:2	0/1:14,5:25:19:0.263:2	0/1:21,16:31:37:0.432:2	0/1:1,8:25:9:0.889:2	0/1:7,15:28:22:0.682:2	0/1:30,9:25:39:0.231:2
chr16	29677871	rs111252068	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,4:24:16:0.250:2	./.	0/1:4,4:23:8:0.500:2	./.	./.
chr16	29677873	rs11574561	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,4:26:35:0.114:2	./.	./.	./.	./.	0/1:6,3:27:9:0.333:2	0/1:12,4:26:16:0.250:2	./.	0/1:3,4:24:7:0.571:2	./.	./.
chr16	29677875	rs60389967	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,19:30:41:0.463:2	./.	./.	./.	0/1:8,3:29:11:0.273:2	./.	0/1:17,15:28:32:0.469:2	./.
chr16	29677881	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,12:31:26:0.480:2	./.	./.	./.
chr16	29678395	rs79850572	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,62:32:120:0.517:2	./.	./.	./.
chr16	29679121	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:33:9:0.333:2	./.
chr16	29679267	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,5:31:124:0.040:2	./.	./.	./.
chr16	29679270	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,5:30:143:0.035:2	./.	./.	./.
chr16	29679272	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,15:33:147:0.102:2	./.	./.	./.
chr16	29679276	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,15:34:145:0.103:2	./.	./.	./.
chr16	29679989	rs12928754	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,6:27:16:0.375:2	./.	./.	./.	0/1:0,11:27:11:1.00:2	0/1:0,11:26:11:1.00:2	0/1:0,11:27:11:1.00:2	0/1:0,14:27:14:1.00:2	0/1:0,11:27:11:1.00:2	./.	0/1:16,12:25:28:0.429:2
chr16	29680256	rs12932957	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:32:10:0.500:2	0/1:1,3:33:4:0.750:2	./.	./.	0/1:0,7:32:7:1.00:2	0/1:0,4:34:4:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,3:30:3:1.00:2	./.	./.	0/1:3,3:35:6:0.500:2
chr16	29680389	rs12929333	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,10:32:10:1.00:2	0/1:7,7:32:14:0.500:2	./.	./.	0/1:0,12:33:12:1.00:2	./.	./.
chr16	29681589	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.
chr16	29706444	rs2303255	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:21,10:29:31:0.323:2	0/1:9,11:30:20:0.550:2	./.	./.	./.	./.	0/1:22,17:29:39:0.436:2	./.	./.	./.	./.
chr16	29708350	rs9932770	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:26:25:1.00:2	0/1:0,14:26:14:1.00:2	0/1:0,3:28:3:1.00:2	0/1:0,32:26:32:1.00:2	0/1:0,14:25:14:1.00:2	0/1:0,32:27:32:1.00:2	0/1:0,15:25:15:1.00:2	0/1:0,20:25:20:1.00:2	0/1:0,25:26:25:1.00:2	0/1:0,14:26:14:1.00:2	0/1:0,17:24:17:1.00:2
chr16	29708541	rs141195918	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,39:31:73:0.542:2	./.	./.	./.	./.	./.	./.	./.
chr16	29756135	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:31:58:0.069:2	./.	./.	./.	./.
chr16	29810687	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,44:31:88:0.506:2
chr16	29811319	rs235648	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:32:23:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,32:32:32:1.00:2
chr16	29814234	rs2450399	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,112:31:112:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,126:30:126:1.00:2	0/1:0,112:31:112:1.00:2	0/1:1,142:30:143:0.993:2	0/1:1,118:30:119:0.992:2	0/1:0,141:31:141:1.00:2	0/1:0,173:31:173:1.00:2	0/1:0,103:30:103:1.00:2	0/1:0,138:31:138:1.00:2
chr16	29816305	rs2229347	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:31:14:0.429:2	./.	./.	./.	./.	./.	./.	./.
chr16	29820940	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,4:30:27:0.148:2	./.	./.	./.	./.	./.	./.	./.
chr16	29824689	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,6:32:71:0.085:2	./.	./.
chr16	29825126	rs11150573	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,6:32:6:1.00:2	0/1:1,94:32:95:0.989:2	0/1:0,97:32:97:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,82:32:82:1.00:2	0/1:1,73:32:74:0.986:2	0/1:0,80:33:80:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,72:32:72:1.00:2
chr16	29908433	rs11649499	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	0/1:0,3:22:3:1.00:2	./.	./.	./.	./.	./.	./.
chr16	29912541	rs141266563	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,21:31:45:0.467:2	0/1:12,7:31:19:0.368:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	29912907	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	29994922	rs3814883	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:31:25:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,5:31:5:1.00:2	0/1:16,15:29:31:0.484:2	0/1:13,14:30:27:0.519:2	0/1:15,5:28:20:0.250:2	./.	./.	./.	0/1:12,10:28:22:0.455:2	0/1:13,14:30:27:0.519:2
chr16	29997925	rs61737884	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,10:31:32:0.313:2	./.	./.	./.	./.	./.	./.	./.
chr16	29998200	rs4077410	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:30:58:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,6:31:6:1.00:2	0/1:32,39:30:71:0.549:2	0/1:0,66:30:66:1.00:2	0/1:40,35:29:75:0.467:2	0/1:0,71:30:71:1.00:2	0/1:53,45:30:98:0.459:2	0/1:28,36:29:64:0.563:2	0/1:43,31:30:74:0.419:2	0/1:37,21:29:58:0.362:2
chr16	29999225	rs11864149	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:26:5:1.00:2	./.	./.	./.	./.
chr16	30002608	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,2:34:5:0.400:2
chr16	30007640	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,6:26:109:0.055:2	./.	./.	./.	./.	./.	./.	./.
chr16	30018500	rs3935873	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:33:19:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,2:27:2:1.00:2	0/1:15,17:30:32:0.531:2	0/1:15,18:31:33:0.545:2	0/1:16,13:31:29:0.448:2	./.	./.	./.	0/1:14,19:32:33:0.576:2	0/1:17,14:31:31:0.452:2
chr16	30021402	rs1140239	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,30:31:31:0.968:2	0/1:0,17:31:17:1.00:2	0/1:0,2:32:2:1.00:2	0/1:14,23:31:37:0.622:2	./.	0/1:9,18:29:27:0.667:2	./.	./.	./.	0/1:16,13:30:29:0.448:2	0/1:11,8:32:19:0.421:2
chr16	30034986	rs79063905	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,24:31:77:0.312:2
chr16	30037128	rs11544328	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:31:28:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,5:32:5:1.00:2	0/1:21,22:32:43:0.512:2	0/1:26,23:30:49:0.469:2	0/1:24,11:33:36:0.314:2	0/1:0,35:32:35:1.00:2	0/1:34,34:33:68:0.500:2	0/1:21,19:31:40:0.475:2	0/1:9,15:31:24:0.625:2	0/1:16,17:33:33:0.515:2
chr16	30093779	rs2278557	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:32:43:1.00:2	0/1:1,28:33:29:0.966:2	0/1:0,12:33:12:1.00:2	0/1:25,36:33:61:0.590:2	./.	0/1:43,34:33:77:0.442:2	./.	./.	./.	0/1:39,40:32:79:0.506:2	0/1:35,22:33:57:0.386:2
chr16	30097630	rs2289292	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,16:29:28:0.571:2	./.	0/1:20,20:30:40:0.500:2	./.	0/1:10,12:30:22:0.545:2	./.
chr16	30119525	rs8061772	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:32:37:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,10:30:10:1.00:2	0/1:31,37:32:68:0.544:2	0/1:0,128:30:128:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,100:31:100:1.00:2	0/1:36,27:33:63:0.429:2	0/1:0,54:31:54:1.00:2	0/1:0,59:31:59:1.00:2
chr16	30123743	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,4:29:67:0.060:2	./.	./.	./.	./.	./.	./.
chr16	30198151	rs1132812	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:30:5:0.800:2	0/1:0,39:29:39:1.00:2	0/1:0,21:28:21:1.00:2	0/1:26,9:28:35:0.257:2	0/1:0,40:30:40:1.00:2	0/1:0,38:31:38:1.00:2	0/1:11,17:31:28:0.607:2	0/1:16,11:31:27:0.407:2	0/1:14,10:29:24:0.417:2
chr16	30199584	rs35900366	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,37:28:94:0.398:2	./.	./.	./.	./.	./.	./.
chr16	30199762	rs201734831	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,9:16:83:0.108:2	./.	./.	./.	./.	./.
chr16	30199883	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:33:41:0.098:2	./.
chr16	30204754	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,29:32:99:0.293:2	./.	./.	./.	./.	./.	./.	./.
chr16	30212154	.	A	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:32,139:32:171:0.813:2	0/1:18,73:32:91:0.802:2	0/1:8,11:33:19:0.579:2	./.	./.	0/1:137,58:31:195:0.297:2	./.	./.	0/1:136,52:33:188:0.277:2	0/1:156,39:32:195:0.200:2	0/1:159,34:32:193:0.176:2
chr16	30214046	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,20:31:191:0.105:2	./.	./.	./.
chr16	30214868	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,23:31:194:0.120:2	./.	./.	./.
chr16	30214869	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,10:26:197:0.051:2	0/1:168,26:32:194:0.134:2	./.	./.	./.
chr16	30214876	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:185,5:30:190:0.026:2	./.	./.	./.	./.	./.	./.
chr16	30214889	.	A	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:189,8:27:197:0.041:2	0/1:181,16:28:197:0.081:2	0/1:135,19:29:154:0.123:2	0/1:177,20:28:197:0.102:2	0/1:182,16:28:198:0.081:2	0/1:192,8:28:200:0.040:2	0/1:189,9:27:198:0.045:2	./.
chr16	30215196	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,19:33:175:0.109:2	./.	./.	./.	./.	./.
chr16	30365335	rs139111996	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,22:31:46:0.478:2
chr16	30376486	rs8049108	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:33:76:1.00:2	0/1:0,31:33:31:1.00:2	0/1:4,4:33:8:0.500:2	0/1:49,45:33:94:0.479:2	./.	0/1:49,33:33:82:0.402:2	./.	./.	0/1:59,52:33:111:0.468:2	0/1:39,51:33:90:0.567:2	0/1:49,50:33:99:0.505:2
chr16	30380872	rs71389465	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,54:27:125:0.432:2	./.	0/1:50,57:27:107:0.533:2	./.	./.	./.	./.
chr16	30393147	rs34518080	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,26:30:52:0.500:2	./.
chr16	30393660	rs4787643	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,10:31:16:0.625:2	0/1:2,56:30:58:0.966:2	0/1:0,73:30:73:1.00:2	0/1:46,37:31:83:0.446:2	0/1:0,82:31:82:1.00:2	0/1:0,92:31:92:1.00:2	0/1:36,28:32:64:0.438:2	0/1:27,21:32:48:0.438:2	./.
chr16	30408765	rs12921440	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:31:9:0.444:2	0/1:62,46:31:109:0.426:2	0/1:1,83:32:84:0.988:2	./.	0/1:0,111:32:111:1.00:2	0/1:1,91:31:92:0.989:2	0/1:57,37:33:94:0.394:2	0/1:54,33:33:87:0.379:2	./.
chr16	30408961	rs61978578	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,17:31:30:0.567:2	./.	./.	./.	./.	./.	./.
chr16	30409241	rs34843513	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,5:31:8:0.625:2	./.	./.	./.	./.	./.
chr16	30409699	rs9936065	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,43:30:78:0.551:2	./.	./.	./.	./.	./.
chr16	30410161	rs141299703	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,17:33:29:0.586:2	./.	./.	./.	./.	./.	./.	./.
chr16	30435601	rs146094440	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,24:30:64:0.375:2
chr16	30435652	rs147236122	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,23:32:60:0.383:2	./.	./.	./.	./.	./.
chr16	30456729	rs11557070	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	30486640	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:32:68:0.059:2	./.	./.	./.	./.	./.
chr16	30495237	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,4:32:101:0.040:2	./.	./.	./.	./.	./.	./.
chr16	30495496	rs7191097	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,12:33:17:0.706:2	./.	./.	./.	./.	./.	./.	./.
chr16	30516609	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:34:133:0.030:2	./.	./.	./.	./.
chr16	30518041	rs2230433	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,33:32:54:0.611:2	0/1:41,35:31:76:0.461:2	./.	./.	./.	0/1:41,44:32:85:0.518:2	0/1:35,29:31:64:0.453:2	0/1:0,92:31:92:1.00:2
chr16	30536417	rs202117110	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,20:30:70:0.286:2	./.
chr16	30536672	rs3751847	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,17:30:28:0.607:2	0/1:10,6:31:16:0.375:2	0/1:0,6:31:6:1.00:2	0/1:22,22:31:44:0.500:2	0/1:1,51:30:52:0.981:2	0/1:30,22:31:52:0.423:2	./.	0/1:30,27:31:57:0.474:2	0/1:2,31:31:34:0.939:2	0/1:0,28:31:28:1.00:2	0/1:1,29:30:31:0.967:2
chr16	30536918	rs10871453	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:28:7:1.00:2	./.	0/1:20,26:29:46:0.565:2	0/1:22,12:28:34:0.353:2	./.	0/1:24,17:29:41:0.415:2	0/1:0,61:30:61:1.00:2	0/1:16,16:26:32:0.500:2	./.
chr16	30545919	rs35512295	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.
chr16	30583517	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,4:29:59:0.068:2	./.	./.	./.	./.	./.	./.	./.
chr16	30594643	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:30:123:0.033:2	./.	./.	./.	./.	./.
chr16	30616250	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:30:57:0.070:2	./.
chr16	30616317	rs34007971	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,26:28:54:0.481:2	./.	./.	./.	./.	./.	./.	./.
chr16	30666367	rs3747481	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:32:7:0.571:2	./.	0/1:3,7:32:10:0.700:2	0/1:0,3:33:3:1.00:2
chr16	30724070	rs4889500	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,97:32:97:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,102:31:102:1.00:2	0/1:0,97:31:97:1.00:2	0/1:0,125:31:125:1.00:2	0/1:0,88:31:88:1.00:2	0/1:0,108:31:108:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,78:31:78:1.00:2	0/1:1,113:31:114:0.991:2
chr16	30732105	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,26:30:59:0.441:2	./.	./.	./.
chr16	30734963	rs4889502	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,115:32:118:0.983:2	0/1:0,78:31:78:1.00:2	0/1:0,15:29:15:1.00:2	0/1:1,164:30:166:0.994:2	0/1:3,184:30:187:0.984:2	0/1:2,176:30:179:0.989:2	0/1:2,172:31:176:0.989:2	0/1:2,190:30:192:0.990:2	0/1:4,143:31:147:0.973:2	0/1:1,100:31:102:0.990:2	0/1:1,122:30:124:0.992:2
chr16	30735038	rs79597785	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,83:32:182:0.456:2	./.
chr16	30748530	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,4:32:32:0.125:2
chr16	30750064	rs61746613	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,28:32:46:0.609:2	./.	./.	./.
chr16	30750226	rs149043190	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,19:30:47:0.404:2	./.	./.	./.
chr16	30770770	rs139907701	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,55:32:107:0.514:2	./.	./.	./.
chr16	30774767	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,31:31:67:0.463:2	./.	./.	./.	./.	./.
chr16	30779716	rs7195142	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:30:18:1.00:2	0/1:0,14:28:14:1.00:2	0/1:0,3:29:3:1.00:2	0/1:0,26:29:26:1.00:2	0/1:0,22:28:22:1.00:2	0/1:0,11:28:12:1.00:2	0/1:0,12:27:12:1.00:2	0/1:0,20:27:20:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,17:29:17:1.00:2	0/1:0,29:28:29:1.00:2
chr16	30780828	rs4889506	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:32:49:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,110:32:110:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,78:33:78:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,53:32:53:1.00:2
chr16	30794575	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,4:32:77:0.052:2	./.	./.	./.	./.	./.	./.
chr16	30936081	rs35675346	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:31:10:0.500:2	./.	./.	0/1:6,5:33:11:0.455:2	./.	./.	0/1:6,7:28:13:0.538:2	0/1:0,18:29:18:1.00:2
chr16	30958191	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,8:30:14:0.571:2	./.	./.	./.	./.
chr16	30960649	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.
chr16	30964940	rs9926903	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,4:33:4:1.00:2	0/1:28,20:32:48:0.417:2	0/1:0,22:30:22:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,26:31:26:1.00:2
chr16	30976129	rs117891062	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,70:30:148:0.473:2	./.	./.	./.	0/1:70,58:31:128:0.453:2	./.	./.
chr16	30977210	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:33:140:0.029:2	./.	./.
chr16	30999142	rs9938550	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,15:30:15:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,6:32:6:1.00:2	./.	./.	0/1:0,39:32:39:1.00:2	0/1:23,16:30:39:0.410:2	0/1:25,13:31:38:0.342:2	0/1:22,9:34:31:0.290:2	0/1:27,8:30:35:0.229:2	./.
chr16	30999198	rs17849880	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,18:32:55:0.327:2	./.	./.	./.	0/1:18,24:33:42:0.571:2	./.	./.
chr16	30999434	rs34212827	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,8:31:22:0.364:2	./.	./.	./.
chr16	30999462	rs2305880	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:32:10:1.00:2	0/1:0,10:32:10:1.00:2	./.	./.	./.	0/1:0,25:32:25:1.00:2	0/1:15,11:31:26:0.423:2	0/1:8,9:28:17:0.529:2	0/1:12,4:33:16:0.250:2	0/1:4,8:33:12:0.667:2	./.
chr16	31004132	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,6:24:46:0.130:2	./.	./.	./.	0/1:61,5:24:66:0.076:2	./.	./.	./.
chr16	31004169	rs17855121	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:24,24:30:49:0.500:2	0/1:13,18:30:31:0.581:2	0/1:1,6:31:7:0.857:2	./.	0/1:64,50:29:114:0.439:2	./.	./.	./.	./.	0/1:40,32:29:72:0.444:2	0/1:34,16:29:50:0.320:2
chr16	31021665	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,10:21:110:0.091:2	./.	0/1:125,11:19:136:0.081:2	./.	./.	./.	./.	./.
chr16	31021674	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,19:12:166:0.114:2	./.
chr16	31072909	rs8046978	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:30:9:0.333:2	0/1:2,4:30:6:0.667:2	./.	./.	./.	0/1:3,4:29:7:0.571:2	./.	./.	0/1:0,6:29:6:1.00:2	./.	./.
chr16	31075175	rs2303223	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,18:31:33:0.545:2	0/1:8,18:31:26:0.692:2	./.	./.	./.	0/1:29,20:29:49:0.408:2	0/1:17,8:30:25:0.320:2	0/1:31,27:30:58:0.466:2	0/1:13,20:29:33:0.606:2	0/1:18,21:31:39:0.538:2	./.
chr16	31075708	rs2032917	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,22:32:22:1.00:2	0/1:0,28:31:28:1.00:2	./.	0/1:6,10:32:16:0.625:2	0/1:0,21:31:21:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,29:30:29:1.00:2
chr16	31088347	rs749671	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,30:32:61:0.492:2	0/1:7,16:32:23:0.696:2	./.	./.	./.	0/1:41,24:31:65:0.369:2	0/1:30,28:32:58:0.483:2	0/1:37,29:31:66:0.439:2	0/1:20,20:33:40:0.500:2	0/1:21,15:32:36:0.417:2	./.
chr16	31088625	rs749670	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,11:32:29:0.379:2	0/1:8,6:31:14:0.429:2	./.	./.	./.	0/1:16,16:30:32:0.500:2	0/1:16,14:31:30:0.467:2	0/1:12,11:33:23:0.478:2	0/1:12,13:33:25:0.520:2	0/1:9,12:31:21:0.571:2	./.
chr16	31089341	rs35041466	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,34:29:63:0.540:2	./.	./.	./.	./.	./.	./.
chr16	31090094	rs78522165	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,4:31:14:0.286:2	0/1:43,43:29:86:0.500:2	./.	./.	0/1:57,40:30:97:0.412:2	./.	./.	./.	0/1:39,38:30:77:0.494:2
chr16	31090407	rs35713203	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:33:5:0.600:2	0/1:24,12:32:36:0.333:2	0/1:0,22:32:22:1.00:2	./.	0/1:22,24:32:46:0.522:2	./.	./.	./.	0/1:1,26:32:27:0.963:2
chr16	31091209	rs3751855	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:31:9:0.444:2	0/1:36,22:30:58:0.379:2	0/1:0,53:28:53:1.00:2	./.	0/1:30,30:28:60:0.500:2	0/1:41,25:30:66:0.379:2	./.	./.	0/1:0,50:28:50:1.00:2
chr16	31091857	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,33:33:69:0.478:2	./.
chr16	31092075	rs7196726	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,12:31:17:0.706:2	0/1:1,20:29:21:0.952:2	./.	0/1:13,8:31:21:0.381:2	0/1:16,11:29:27:0.407:2	./.	./.	0/1:2,19:31:21:0.905:2
chr16	31093892	rs889550	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:30:19:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,4:31:4:1.00:2	0/1:18,13:31:31:0.419:2	0/1:0,26:31:26:1.00:2	0/1:0,42:30:42:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,28:28:28:1.00:2
chr16	31093954	rs750952	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,5:32:15:0.333:2	0/1:0,14:31:14:1.00:2	./.	0/1:7,4:31:11:0.364:2	./.	./.	./.	0/1:0,23:31:23:1.00:2
chr16	31094527	rs2077633	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,76:33:157:0.484:2	./.	./.	./.
chr16	31094679	rs72785535	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,28:28:59:0.475:2	0/1:11,17:31:28:0.607:2	./.	./.	./.	0/1:8,7:29:15:0.467:2	./.	./.	0/1:21,30:30:51:0.588:2	0/1:19,16:30:35:0.457:2	./.
chr16	31095171	rs11865038	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,7:32:13:0.538:2	0/1:55,45:31:100:0.450:2	0/1:5,110:31:115:0.957:2	./.	0/1:62,46:31:108:0.426:2	0/1:69,44:31:113:0.389:2	./.	./.	0/1:0,86:32:86:1.00:2
chr16	31095499	rs76684867	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,19:11:107:0.178:2	./.	./.	./.
chr16	31095896	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,4:29:88:0.045:2	./.	./.	./.	./.	./.	./.	./.
chr16	31095999	rs138417092	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,9:32:17:0.529:2	0/1:55,48:32:103:0.466:2	./.	./.	0/1:43,34:31:77:0.442:2	./.	./.	./.	./.
chr16	31096024	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:33:92:0.043:2	./.
chr16	31096164	rs7199949	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,7:32:17:0.412:2	0/1:56,66:32:122:0.541:2	0/1:0,72:31:72:1.00:2	./.	0/1:43,26:32:69:0.377:2	0/1:55,38:32:93:0.409:2	./.	./.	0/1:0,54:32:54:1.00:2
chr16	31104747	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:29:54:0.074:2	./.	./.	./.	./.
chr16	31105554	rs2884737	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,37:32:92:0.402:2	0/1:60,68:32:128:0.531:2	0/1:57,53:32:110:0.482:2	./.	0/1:35,40:30:75:0.533:2	./.
chr16	31106015	rs55894764	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:24:7:0.571:2	0/1:14,13:27:27:0.481:2	./.	./.	0/1:12,18:29:30:0.600:2	./.	./.	./.	./.
chr16	31121793	rs14235	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,36:32:74:0.486:2	0/1:19,15:32:34:0.441:2	./.	./.	./.	0/1:44,35:31:79:0.443:2	0/1:52,60:31:112:0.536:2	0/1:68,64:31:132:0.485:2	0/1:45,46:30:91:0.505:2	0/1:38,38:32:76:0.500:2	./.
chr16	31122529	rs202116337	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:32:12:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	31138620	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,4:30:104:0.038:2	./.	./.	./.	./.	./.	./.
chr16	31141826	rs1549295	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:28:42:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,80:30:80:1.00:2	0/1:1,64:29:65:0.985:2	0/1:0,77:29:77:1.00:2	0/1:0,65:29:65:1.00:2	0/1:0,79:29:79:1.00:2	0/1:2,40:30:42:0.952:2	0/1:0,49:29:49:1.00:2	0/1:0,57:29:57:1.00:2
chr16	31141880	rs1549294	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,60:33:60:1.00:2	0/1:0,99:33:99:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,60:32:60:1.00:2
chr16	31142271	rs17855606	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,5:32:7:0.714:2	0/1:2,5:32:7:0.714:2	./.	0/1:7,10:30:17:0.588:2	0/1:9,12:31:21:0.571:2	./.	./.	0/1:6,7:34:13:0.538:2	0/1:11,6:31:17:0.353:2	./.
chr16	31146739	rs8049043	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,58:32:108:0.537:2	./.	./.	./.
chr16	31146742	rs11558743	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,47:32:93:0.505:2	./.	./.	./.	./.	./.	./.
chr16	31152818	rs117442264	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,15:30:20:0.750:2	./.	./.	./.	./.	./.
chr16	31153105	rs1549300	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:32:43:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,3:33:3:1.00:2	0/1:0,71:33:71:1.00:2	0/1:1,78:31:79:0.987:2	0/1:0,110:32:110:1.00:2	0/1:1,82:33:83:0.988:2	0/1:3,101:32:104:0.971:2	0/1:0,65:33:65:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,74:32:74:1.00:2
chr16	31154146	rs1549299	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,4:31:4:1.00:2	./.	0/1:0,2:32:2:1.00:2	./.	0/1:3,4:31:7:0.571:2	0/1:0,9:27:9:1.00:2	./.	0/1:0,2:27:2:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,6:30:6:1.00:2	./.
chr16	31154960	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:32:100:0.040:2
chr16	31193942	rs741810	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,11:32:14:0.786:2	0/1:49,46:31:95:0.484:2	./.	./.	0/1:54,60:32:114:0.526:2	./.	./.	0/1:36,41:32:77:0.532:2	0/1:51,47:31:98:0.480:2
chr16	31195279	rs1052352	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:30,27:31:57:0.474:2	0/1:10,18:31:28:0.643:2	./.	./.	0/1:0,52:30:52:1.00:2	0/1:0,44:30:44:1.00:2	0/1:41,22:31:63:0.349:2	0/1:1,59:29:60:0.983:2	0/1:1,53:30:54:0.981:2	0/1:19,13:28:32:0.406:2	./.
chr16	31195598	rs61732970	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,84:31:195:0.431:2	./.	./.	./.
chr16	31196325	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:28:68:0.059:2
chr16	31213969	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,4:31:14:0.286:2	./.	./.	./.	./.	./.	./.
chr16	31226350	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.
chr16	31230463	rs7186832	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,153:31:155:0.987:2	0/1:0,94:31:94:1.00:2	0/1:15,22:30:37:0.595:2	./.	0/1:0,173:30:173:1.00:2	0/1:0,184:30:184:1.00:2	0/1:92,90:30:182:0.495:2	0/1:2,171:31:173:0.988:2	0/1:3,178:31:181:0.983:2	0/1:103,69:30:174:0.401:2	0/1:94,90:30:186:0.489:2
chr16	31235548	rs58585879	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,10:28:31:0.323:2	./.	./.	./.	./.	./.	./.	./.
chr16	31276811	rs1143679	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:36,19:28:55:0.345:2	0/1:20,12:29:32:0.375:2	./.	./.	0/1:48,45:30:93:0.484:2	./.	0/1:44,36:29:80:0.450:2	0/1:60,48:29:108:0.444:2	./.	./.	./.
chr16	31289396	rs1143680	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:56,35:28:91:0.385:2	0/1:26,17:26:43:0.395:2	0/1:7,6:29:13:0.462:2	./.	./.	./.	./.	./.	./.	./.	0/1:64,56:28:121:0.467:2
chr16	31336719	rs1143682	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,33:30:73:0.465:2	./.	0/1:48,50:30:98:0.510:2	0/1:0,71:30:71:1.00:2	./.	./.
chr16	31336888	rs1143683	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:32,25:27:57:0.439:2	0/1:14,12:31:26:0.462:2	./.	./.	0/1:2,74:30:77:0.974:2	./.	0/1:52,39:31:92:0.429:2	0/1:36,25:30:61:0.410:2	./.	0/1:30,21:30:51:0.412:2	./.
chr16	31336897	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:30:86:0.047:2	./.	./.	./.	./.
chr16	31343005	rs1143678	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:31,25:28:56:0.446:2	0/1:12,16:31:28:0.571:2	./.	./.	0/1:1,66:29:67:0.985:2	./.	0/1:38,31:28:69:0.449:2	0/1:33,59:27:92:0.641:2	./.	0/1:25,35:28:60:0.583:2	./.
chr16	31367318	rs2230424	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:28,30:29:58:0.517:2	0/1:17,15:28:32:0.469:2	0/1:11,3:29:14:0.214:2	./.	./.	./.	./.	./.	./.	./.	0/1:28,33:28:61:0.541:2
chr16	31371674	rs2230428	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:33,35:31:68:0.515:2	0/1:28,30:31:58:0.517:2	0/1:6,4:31:10:0.400:2	./.	./.	0/1:37,54:31:91:0.593:2	./.	0/1:117,4:32:121:0.033:2	./.	./.	0/1:52,54:30:106:0.509:2
chr16	31374049	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,5:32:183:0.027:2	./.	./.	./.	./.
chr16	31374306	rs147598964	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,16:32:46:0.348:2	0/1:7,11:31:18:0.611:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	31374535	rs2230429	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,23:29:45:0.511:2	./.	0/1:31,37:30:68:0.544:2	0/1:1,51:30:52:0.981:2	./.	./.
chr16	31382470	rs138137251	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,9:31:22:0.409:2	./.	./.	./.	./.
chr16	31391120	rs2230427	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,45:32:94:0.479:2	./.	./.	./.	./.	./.	./.	./.
chr16	31391356	rs147269916	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,16:29:37:0.432:2	./.	./.	./.	./.	./.	./.	./.
chr16	31422429	rs12444660	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,90:31:91:0.989:2	0/1:0,44:30:44:1.00:2	0/1:6,3:31:9:0.333:2	0/1:64,69:30:133:0.519:2	0/1:2,123:30:125:0.984:2	0/1:1,101:30:102:0.990:2	0/1:70,61:30:131:0.466:2	0/1:0,140:30:140:1.00:2	0/1:0,102:31:102:1.00:2	0/1:2,97:30:99:0.980:2	0/1:0,86:31:86:1.00:2
chr16	31429450	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:32:117:0.034:2	./.	./.
chr16	31429479	rs78517822	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,69:30:175:0.397:2	./.	./.	./.	./.	./.	./.	./.
chr16	31447694	rs74015528	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,11:27:20:0.550:2	./.	./.	./.	./.	./.	./.	./.
chr16	31447788	rs74015530	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,22:32:46:0.478:2	./.	./.	./.	./.	./.	./.	./.
chr16	31473275	rs35923277	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,9:28:14:0.643:2	0/1:70,63:29:133:0.474:2	./.	./.	0/1:82,69:29:151:0.457:2	./.	./.	./.	./.
chr16	31473899	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,15:31:30:0.500:2	./.	./.	./.
chr16	31476458	rs11150624	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:39,31:31:70:0.443:2	0/1:31,17:31:48:0.354:2	./.	./.	0/1:0,101:31:101:1.00:2	0/1:0,100:31:100:1.00:2	0/1:80,64:32:144:0.444:2	./.	0/1:55,56:32:111:0.505:2	0/1:48,28:31:76:0.368:2	0/1:0,83:30:83:1.00:2
chr16	31477658	rs200335852	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,8:31:24:0.333:2	0/1:15,10:32:25:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	31488715	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,18:32:44:0.409:2	./.
chr16	31504945	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,41:30:62:0.661:2	./.	./.	./.	./.	./.
chr16	31510692	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,4:30:88:0.045:2	./.	./.	./.	./.	./.	./.	./.
chr16	31539934	rs17677	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,6:32:21:0.286:2	./.	./.	./.	0/1:0,31:31:31:1.00:2	./.	./.	./.
chr16	31765218	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:32:74:0.054:2	./.
chr16	31770664	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,6:30:64:0.094:2	./.	./.	./.	./.
chr16	31770723	rs12921028	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,28:32:83:0.337:2	0/1:17,13:32:30:0.433:2	0/1:0,8:32:8:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,31:32:31:1.00:2	0/1:26,25:32:51:0.490:2	0/1:39,27:31:66:0.409:2	0/1:1,70:31:71:0.986:2	0/1:0,87:32:87:1.00:2
chr16	31896561	rs61740916	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,26:30:50:0.520:2	0/1:11,15:30:26:0.577:2	./.	./.	./.	0/1:16,17:30:33:0.515:2	./.	./.	./.	./.	./.
chr16	31926619	rs3850114	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:32:44:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,3:31:3:1.00:2	0/1:31,32:31:63:0.508:2	0/1:0,31:30:31:1.00:2	0/1:0,67:30:67:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,59:31:59:1.00:2
chr16	32685917	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:181,15:29:196:0.077:2	./.	./.	./.	./.	./.	./.	./.
chr16	32687195	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:180,14:32:194:0.072:2	./.	./.	./.	./.	./.	./.	./.
chr16	32687292	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:174,7:29:181:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr16	32687412	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:161,14:30:175:0.080:2	./.	./.	./.	./.	./.	./.	./.
chr16	32687415	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,7:31:35:0.200:2	./.	./.	./.	0/1:162,16:30:178:0.090:2	./.	./.	./.	./.
chr16	32859026	rs150024	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:164,33:33:197:0.168:2	./.	./.	./.	./.	./.	./.	./.
chr16	32859027	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,8:31:197:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr16	32859327	rs112511192	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:146,17:20:163:0.104:2	./.	0/1:21,6:16:27:0.222:2	0/1:152,20:13:172:0.116:2	0/1:92,20:10:112:0.179:2	0/1:135,18:14:155:0.118:2	0/1:114,25:13:139:0.180:2	0/1:137,34:13:172:0.199:2	0/1:154,14:16:168:0.083:2	0/1:131,36:15:168:0.216:2	0/1:128,40:15:169:0.238:2
chr16	32859331	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,19:11:173:0.110:2
chr16	32859341	.	G	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:132,25:14:157:0.159:2	./.	./.	0/1:153,25:13:178:0.140:2	0/1:86,22:13:108:0.204:2	0/1:127,26:16:153:0.170:2	0/1:119,35:16:154:0.227:2	0/1:136,26:14:165:0.160:2	0/1:146,15:16:161:0.093:2	0/1:119,34:16:154:0.222:2	0/1:120,37:19:157:0.236:2
chr16	33205618	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,22:29:189:0.117:2	./.	./.	./.	./.
chr16	33205621	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:176,14:30:190:0.074:2	./.	./.	./.	./.	./.	./.	./.
chr16	33205741	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:171,11:31:182:0.060:2	./.	./.	./.	./.	./.	./.	./.
chr16	33205838	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:183,10:33:193:0.052:2	./.	./.	./.	./.	./.	./.	./.
chr16	33207116	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:178,21:33:200:0.106:2	./.	./.	./.	./.	./.	./.	./.
chr16	33262153	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,24:30:194:0.124:2	./.	./.	./.	./.
chr16	33262156	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:178,6:32:184:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr16	33262276	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:179,13:31:193:0.068:2	./.	./.	./.	./.	./.	./.	./.
chr16	33262373	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:183,11:32:194:0.057:2	./.	./.	./.	./.	./.	./.	./.
chr16	33263651	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:164,33:31:197:0.168:2	./.	./.	./.	./.	./.	./.	./.
chr16	33647401	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,20:30:113:0.177:2	./.	./.	./.	./.	./.	./.	./.
chr16	46655210	rs6598679	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,3:29:3:1.00:2	0/1:0,5:30:5:1.00:2	./.	0/1:0,5:27:5:1.00:2	0/1:0,11:27:11:1.00:2	0/1:0,8:27:8:1.00:2	0/1:0,2:27:2:1.00:2	0/1:0,4:28:5:1.00:2	0/1:0,6:24:6:1.00:2	0/1:0,8:27:8:1.00:2	./.
chr16	46694416	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:29:54:0.074:2	./.	./.	./.	./.	./.
chr16	46696284	rs168745	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,97:32:97:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,104:31:104:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,109:31:109:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,92:32:92:1.00:2
chr16	46706255	rs368876504	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:32:138:0.029:2	./.	./.
chr16	46717424	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:32:52:0.077:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	46723619	rs146795505	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,6:30:7:0.857:2	./.	./.	./.	./.	./.
chr16	46744683	rs200273306	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,7:15:37:0.189:2	./.	0/1:11,8:16:19:0.421:2	./.	./.	./.	0/1:27,9:14:36:0.250:2	./.
chr16	46744689	rs77620762	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,8:15:27:0.296:2	./.	./.	0/1:26,9:16:35:0.257:2	./.
chr16	46773999	rs28407821	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,17:30:17:1.00:2	./.	0/1:36,32:30:68:0.471:2	0/1:2,72:31:74:0.973:2	0/1:0,67:31:67:1.00:2	0/1:3,111:31:114:0.974:2	0/1:0,105:32:105:1.00:2	0/1:33,34:31:67:0.507:2	0/1:66,41:32:107:0.383:2
chr16	46782012	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:34:168:0.024:2	./.	./.
chr16	46952666	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,4:31:32:0.125:2	./.
chr16	47117222	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:125,4:33:129:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr16	47117654	rs2231982	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,82:31:159:0.516:2
chr16	47165893	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:33:151:0.026:2	./.	./.
chr16	47486657	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:33:155:0.026:2	./.	./.	./.	./.
chr16	47549473	rs56257827	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,17:31:55:0.309:2	./.	./.	./.	./.	./.	./.	./.
chr16	47684537	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,4:33:53:0.075:2	./.	./.	./.	./.	./.	./.	./.
chr16	47732476	rs12918964	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,5:31:11:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	48120697	rs16945786	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,65:29:111:0.586:2	0/1:78,4:31:82:0.049:2	./.	./.
chr16	48121912	rs34106426	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,73:33:156:0.468:2	./.	./.	./.
chr16	48122456	rs77775459	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,46:32:101:0.455:2	./.	./.	./.
chr16	48122582	rs7193955	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,83:33:85:0.976:2	0/1:0,37:32:37:1.00:2	0/1:0,8:33:8:1.00:2	0/1:34,31:32:65:0.477:2	0/1:2,50:32:52:0.962:2	0/1:51,48:32:99:0.485:2	0/1:1,82:32:83:0.988:2	./.	0/1:0,88:33:88:1.00:2	0/1:44,33:33:77:0.429:2	0/1:1,83:33:84:0.988:2
chr16	48134784	rs6500304	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,41:33:96:0.427:2	./.	./.	./.
chr16	48134856	rs6500305	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,59:32:155:0.381:2	./.	./.	./.
chr16	48138259	rs9925287	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,42:33:105:0.400:2	./.	./.	./.
chr16	48138272	rs8057474	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,44:32:75:0.587:2	./.	./.	./.	./.	./.	./.	./.
chr16	48149467	rs9302750	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,21:29:42:0.500:2	./.	./.	./.
chr16	48151198	rs16945816	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,62:30:160:0.388:2	./.	./.	./.
chr16	48158197	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,35:33:57:0.614:2	./.
chr16	48164760	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:33:87:0.046:2	./.	./.	./.
chr16	48164777	rs12149826	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,25:32:41:0.610:2	./.	./.	./.	0/1:36,39:34:75:0.520:2	0/1:34,43:32:77:0.558:2	0/1:34,28:32:62:0.452:2
chr16	48167628	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,4:31:133:0.030:2	./.	./.	./.	./.	./.	./.
chr16	48175235	rs16945874	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:30:10:0.600:2	./.	./.	./.	0/1:3,73:31:76:0.961:2	0/1:40,22:31:62:0.355:2	./.	./.	./.
chr16	48177963	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,4:29:37:0.108:2	./.	./.	./.	./.	./.	./.	./.
chr16	48201432	rs16945916	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,14:31:18:0.778:2	./.	./.	./.	0/1:5,183:31:188:0.973:2	./.	0/1:81,57:31:138:0.413:2	./.	./.
chr16	48204078	rs61739606	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,32:30:69:0.464:2	./.	./.
chr16	48226479	rs12443685	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,54:32:84:0.643:2	./.	./.	./.	./.	./.	./.	./.
chr16	48227862	rs11866251	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,9:30:19:0.474:2	./.	./.	./.	0/1:0,55:31:55:1.00:2	./.	0/1:34,31:32:65:0.477:2	./.	./.
chr16	48237224	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,4:32:32:0.125:2	./.	./.	./.	./.
chr16	48242379	rs17822471	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,34:32:72:0.479:2	0/1:19,22:32:42:0.537:2	./.	./.
chr16	48248918	rs8047091	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,8:29:9:0.889:2	./.	./.	./.	0/1:4,81:32:85:0.953:2	0/1:5,64:33:69:0.928:2	0/1:57,43:34:100:0.430:2	0/1:34,23:30:57:0.404:2	./.
chr16	48250026	rs11863236	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:32:7:0.857:2	./.	./.	./.	0/1:4,18:31:22:0.818:2	0/1:18,26:32:44:0.591:2	./.	0/1:7,12:34:19:0.632:2	./.
chr16	48256602	rs16945974	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,9:32:15:0.600:2	0/1:117,4:34:121:0.033:2	./.	./.	0/1:0,78:33:78:1.00:2	0/1:88,61:33:149:0.409:2	./.	0/1:52,30:33:82:0.366:2	./.
chr16	48258198	rs17822931	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:33:10:0.500:2	./.	./.	./.	./.	0/1:67,3:34:70:0.043:2	./.	./.	./.
chr16	48265777	rs16945988	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,3:31:15:0.200:2	./.	./.	./.	0/1:3,162:31:165:0.982:2	./.	./.	0/1:93,81:32:174:0.466:2	./.
chr16	48286218	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:33:86:0.047:2	./.
chr16	48381537	rs79926545	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,83:31:163:0.509:2	./.	./.	./.
chr16	48396333	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:31:113:0.035:2	./.	./.	./.
chr16	48397040	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:32:55:0.073:2	./.	./.	./.	./.	./.
chr16	48595895	rs79987532	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,41:30:99:0.414:2	./.	./.	./.
chr16	49314837	rs61735589	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,16:33:17:0.941:2	./.	./.	./.	./.	./.	./.	./.	0/1:66,72:32:138:0.522:2
chr16	49670390	rs3803667	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,87:29:88:0.989:2	0/1:2,56:28:58:0.966:2	./.	./.	0/1:121,76:29:197:0.386:2	./.	0/1:93,58:29:151:0.384:2	0/1:91,92:29:184:0.503:2	./.	./.	0/1:32,38:27:71:0.543:2
chr16	49671518	rs13336762	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,17:30:44:0.386:2	./.	./.	./.	./.	./.	./.	./.
chr16	49672520	rs3803665	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:30:56:1.00:2	0/1:0,27:30:27:1.00:2	0/1:12,3:32:15:0.200:2	0/1:53,38:30:91:0.418:2	0/1:80,34:30:114:0.298:2	./.	0/1:0,118:29:118:1.00:2	0/1:0,103:29:103:1.00:2	0/1:65,30:30:96:0.316:2	./.	0/1:40,39:29:79:0.494:2
chr16	50059279	rs9934704	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.
chr16	50067337	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:32:126:0.032:2	./.	./.	./.
chr16	50067346	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:30:133:0.030:2	./.	./.	./.
chr16	50067357	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,5:31:137:0.036:2	./.	./.	./.
chr16	50069312	rs2041918	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:32:5:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,26:32:26:1.00:2	./.	0/1:14,13:31:27:0.481:2	0/1:18,16:32:34:0.471:2	0/1:0,22:32:23:1.00:2	0/1:0,46:32:46:1.00:2
chr16	50102785	rs200316648	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,77:32:168:0.458:2	./.	./.	./.
chr16	50106594	rs2287197	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,14:32:14:1.00:2	0/1:0,103:33:103:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,100:32:101:1.00:2	./.	0/1:75,55:32:130:0.423:2	0/1:81,64:33:145:0.441:2	0/1:3,100:33:103:0.971:2	0/1:0,121:33:121:1.00:2
chr16	50109555	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,4:33:68:0.059:2	./.	./.	./.	./.	./.	./.
chr16	50326661	rs8051594	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,55:29:55:1.00:2	0/1:0,30:29:30:1.00:2	./.	0/1:0,56:29:56:1.00:2	0/1:1,88:29:89:0.989:2	0/1:0,59:30:59:1.00:2	0/1:0,92:29:92:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,71:30:71:1.00:2	0/1:0,49:29:49:1.00:2	0/1:0,65:29:65:1.00:2
chr16	50335092	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:32:117:0.034:2	./.	./.	./.	./.	./.
chr16	50342658	rs17289102	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,14:32:32:0.438:2	0/1:10,6:33:16:0.375:2	./.	./.	0/1:35,24:32:59:0.407:2	0/1:28,29:32:57:0.509:2	0/1:46,48:33:94:0.511:2	./.	0/1:36,14:32:50:0.280:2	./.	./.
chr16	50354205	rs148031885	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:32:71:0.056:2	./.	./.	./.	./.
chr16	50354275	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:33:47:0.085:2	./.	./.	./.	./.	./.
chr16	50354279	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:31:45:0.089:2	./.	./.	./.	./.	./.
chr16	50354638	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:33:122:0.033:2	./.	./.	./.	./.
chr16	50367512	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:31:164:0.024:2	./.	./.	./.
chr16	50368663	rs1062348	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,26:33:60:0.433:2	./.	0/1:22,36:32:58:0.621:2
chr16	50368713	rs141830004	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,5:32:144:0.035:2	./.
chr16	50388780	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:32:57:0.070:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	50402112	rs145220538	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,20:32:48:0.417:2	./.	./.	./.	./.	./.
chr16	50402643	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,12:33:78:0.154:2	0/1:71,4:31:75:0.053:2	0/1:67,4:32:71:0.056:2	0/1:93,4:33:97:0.041:2	./.	./.	./.
chr16	50402709	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,12:31:45:0.267:2	0/1:43,4:31:47:0.085:2	0/1:37,4:32:41:0.098:2	0/1:47,4:31:51:0.078:2	./.	./.	./.
chr16	50642201	rs933566	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:33:6:1.00:2	0/1:0,73:33:73:1.00:2	0/1:49,34:32:83:0.410:2	./.	./.	0/1:0,73:33:73:1.00:2	0/1:24,36:33:60:0.600:2	./.	0/1:27,46:34:73:0.630:2
chr16	50667596	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:31:50:0.080:2	./.
chr16	50702961	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:32:176:0.023:2	./.	./.	./.	./.	./.
chr16	50707334	rs199531677	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:34:65:0.062:2
chr16	50709723	rs6596	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:33,29:32:62:0.468:2	0/1:25,25:32:50:0.500:2	./.	./.	./.	./.	0/1:60,54:32:114:0.474:2	./.	./.	./.	./.
chr16	50711357	rs201947347	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,7:20:59:0.121:2	./.
chr16	50733859	rs2067085	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,13:31:13:1.00:2	./.	./.	0/1:10,8:32:18:0.444:2	./.	./.	0/1:0,8:31:8:1.00:2	./.
chr16	50744624	rs2066842	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,61:30:63:0.984:2	0/1:1,28:31:29:0.966:2	./.	./.	0/1:50,55:30:105:0.524:2	./.	0/1:42,42:30:84:0.500:2	0/1:49,43:29:92:0.467:2	./.	./.	0/1:33,37:30:70:0.529:2
chr16	50744688	rs5743271	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,27:32:53:0.509:2	./.
chr16	50744999	rs140716236	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,58:31:99:0.586:2	./.	./.	./.
chr16	50745099	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,25:31:37:0.676:2	0/1:10,14:32:24:0.583:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	50745199	rs2066843	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,33:31:33:1.00:2	0/1:0,13:29:14:1.00:2	./.	./.	0/1:23,33:31:56:0.589:2	./.	0/1:24,22:31:46:0.478:2	0/1:24,28:31:52:0.538:2	./.	./.	0/1:17,15:32:32:0.469:2
chr16	50745583	rs1861759	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,64:32:65:0.985:2	./.	./.	0/1:73,46:32:119:0.387:2	./.	./.	0/1:0,64:31:64:1.00:2	./.
chr16	50746111	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,45:28:74:0.608:2	0/1:27,32:29:59:0.542:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	50757276	rs5743291	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,100:32:100:1.00:2	./.
chr16	50827518	rs2066852	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,35:32:76:0.461:2
chr16	50828259	rs200154154	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,10:20:157:0.064:2
chr16	51171083	rs140524372	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,37:32:88:0.420:2	./.	./.
chr16	51171175	rs4614723	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:30:76:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,79:30:79:1.00:2	0/1:0,58:29:58:1.00:2	0/1:0,60:29:60:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,67:30:67:1.00:2	0/1:0,86:30:86:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,78:31:78:1.00:2
chr16	51172677	rs11645288	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:61,60:32:121:0.496:2	0/1:34,21:32:55:0.382:2	./.	0/1:83,72:31:155:0.465:2	./.	./.	./.	./.	./.	0/1:93,66:32:159:0.415:2	./.
chr16	51173559	rs1965024	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,35:32:70:0.500:2	0/1:26,28:32:54:0.519:2	0/1:0,12:31:12:1.00:2	0/1:42,37:30:79:0.468:2	0/1:1,75:31:76:0.987:2	0/1:55,45:31:100:0.450:2	0/1:84,39:31:124:0.317:2	0/1:1,108:32:109:0.991:2	./.	0/1:45,37:32:82:0.451:2	0/1:0,68:32:68:1.00:2
chr16	51173955	rs144019351	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,48:31:101:0.475:2	./.	0/1:54,50:31:104:0.481:2	./.	./.
chr16	51173975	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,12:30:139:0.086:2	./.	./.	./.	./.
chr16	51175658	rs13336129	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,27:26:74:0.365:2	./.	./.	./.	./.
chr16	52473263	rs9925256	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:31,16:30:47:0.340:2	0/1:26,18:31:44:0.409:2	./.	0/1:0,36:31:36:1.00:2	./.	0/1:26,35:30:61:0.574:2	0/1:46,22:30:68:0.324:2	./.	0/1:31,24:31:55:0.436:2	./.	0/1:0,46:30:46:1.00:2
chr16	52473655	rs191245327	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,78:31:193:0.404:2	./.	./.	./.	./.
chr16	52478206	rs3743796	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:24,24:33:48:0.500:2	0/1:25,10:33:35:0.286:2	./.	0/1:1,29:32:30:0.967:2	./.	./.	./.	./.	./.	./.	./.
chr16	52478215	rs3743797	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:25,28:33:53:0.528:2	0/1:26,11:33:37:0.297:2	./.	0/1:1,32:33:33:0.970:2	./.	./.	./.	./.	./.	./.	./.
chr16	52484384	rs147678931	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,62:32:114:0.549:2	./.	./.	./.
chr16	53190501	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,4:31:70:0.057:2	./.	./.	./.	./.	./.	./.
chr16	53262964	rs35198193	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,17:31:46:0.370:2	./.	./.	0/1:39,37:31:76:0.487:2
chr16	53283966	rs8052283	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,19:30:38:0.500:2	0/1:15,19:31:34:0.559:2	./.	./.	./.	0/1:1,47:33:48:0.979:2	0/1:0,28:32:28:1.00:2	./.
chr16	53289581	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:31:112:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	53308149	rs61747627	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,93:32:184:0.505:2
chr16	53325691	rs1894903	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,38:31:88:0.432:2	0/1:28,24:31:52:0.462:2	./.	./.	./.	0/1:53,27:33:80:0.338:2	0/1:0,34:32:34:1.00:2	./.
chr16	53326860	rs2287078	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,62:31:147:0.422:2	0/1:54,48:30:102:0.471:2	./.	./.	./.	0/1:0,138:32:138:1.00:2	0/1:2,95:31:97:0.979:2	./.
chr16	53341748	rs6499548	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,55:32:86:0.640:2	0/1:24,33:32:57:0.579:2	0/1:8,9:32:17:0.529:2	0/1:52,31:33:83:0.373:2	0/1:0,66:32:66:1.00:2	0/1:0,78:32:78:1.00:2	0/1:2,58:33:60:0.967:2	0/1:2,96:32:98:0.980:2	0/1:0,103:32:103:1.00:2	0/1:0,55:33:55:1.00:2	0/1:0,86:32:86:1.00:2
chr16	53341803	rs61747411	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,33:32:55:0.600:2	0/1:20,24:32:44:0.545:2	./.	./.	./.	0/1:26,28:33:56:0.519:2	./.	./.	./.	./.	./.
chr16	53342731	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,6:32:43:0.140:2	./.
chr16	53358260	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2
chr16	53358318	rs370894173	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:32:12:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	53358368	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:26:44:0.091:2	./.
chr16	53358439	rs3743771	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,13:30:28:0.464:2	0/1:10,12:30:22:0.545:2	./.	./.	./.	0/1:19,15:32:34:0.441:2	0/1:0,33:31:33:1.00:2	./.
chr16	53358489	rs113575646	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,11:30:24:0.458:2	./.	./.	./.	./.
chr16	53481010	rs17800727	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,24:32:42:0.571:2	./.	./.	./.	./.	./.
chr16	53488611	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:33:103:0.039:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	53499374	rs76818213	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,49:32:88:0.557:2
chr16	53503934	rs1131220	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,26:30:74:0.351:2	0/1:38,29:30:67:0.433:2	0/1:0,64:31:64:1.00:2	./.	./.	0/1:48,32:32:81:0.400:2	./.	0/1:29,44:31:73:0.603:2
chr16	53503943	rs11540358	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,27:33:71:0.380:2	./.	./.	0/1:57,38:33:95:0.400:2	./.	./.
chr16	53504687	rs144971281	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,8:32:22:0.364:2	./.	./.	./.	./.
chr16	53504721	rs10748	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,22:32:63:0.349:2	0/1:26,13:30:39:0.333:2	0/1:0,42:31:42:1.00:2	./.	./.	0/1:35,29:33:64:0.453:2	./.	0/1:35,50:32:85:0.588:2
chr16	53513055	rs8049033	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,44:33:70:0.629:2	0/1:30,25:32:55:0.455:2	0/1:25,22:33:47:0.468:2	./.	./.	0/1:39,26:34:65:0.400:2	./.	0/1:59,20:32:79:0.253:2
chr16	53526366	rs16952272	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,95:28:187:0.508:2	./.	./.	./.	./.	./.
chr16	53528455	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,10:30:161:0.062:2	./.	./.	./.	./.
chr16	53532400	rs199669647	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,27:33:189:0.144:2	./.	./.	./.
chr16	53639438	rs3213758	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,55:31:109:0.505:2	./.	./.	./.	./.	./.	0/1:35,41:32:76:0.539:2	./.
chr16	53639508	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,4:33:32:0.125:2
chr16	53671754	rs2111119	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,41:33:101:0.406:2	./.	./.	./.	./.	./.	0/1:39,26:32:65:0.400:2	./.
chr16	53682949	rs2302677	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:31,21:32:52:0.404:2	0/1:24,8:32:32:0.250:2	./.	./.	./.	./.	./.	./.	./.	0/1:25,25:32:50:0.500:2	./.
chr16	53726057	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.
chr16	53860303	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,40:32:108:0.370:2	./.	./.	./.	./.	./.
chr16	54318172	rs1126960	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,11:31:25:0.440:2	0/1:12,8:32:20:0.400:2	./.	./.	0/1:21,22:31:43:0.512:2	0/1:37,22:31:59:0.373:2	./.	./.	0/1:19,24:31:43:0.558:2	./.	0/1:20,18:31:38:0.474:2
chr16	54319405	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,5:27:118:0.042:2	./.	./.	./.	./.
chr16	54966679	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:35:104:0.038:2	./.	./.	./.	./.
chr16	54967096	rs13336114	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.
chr16	55360493	rs79122224	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,12:31:37:0.324:2	./.	./.	./.	./.
chr16	55363094	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,51:32:81:0.630:2	./.	./.	./.
chr16	55364248	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:32:98:0.041:2	./.
chr16	55364262	rs17230294	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,46:32:107:0.430:2	./.	./.	./.
chr16	55519535	rs1132896	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,9:32:21:0.429:2	./.	./.	0/1:61,69:32:130:0.531:2	0/1:77,45:33:122:0.369:2	./.	0/1:78,40:34:118:0.339:2	./.	./.
chr16	55519607	rs1053605	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,47:32:90:0.522:2	./.	./.	./.	./.	./.	./.	0/1:30,29:32:59:0.492:2
chr16	55523654	rs16955236	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:33:14:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	55523705	rs243849	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:28:53:1.00:2	0/1:0,34:28:34:1.00:2	0/1:0,5:29:5:1.00:2	0/1:45,25:28:70:0.357:2	./.	0/1:44,36:28:80:0.450:2	0/1:2,60:27:62:0.968:2	0/1:38,37:28:75:0.493:2	0/1:0,65:30:65:1.00:2	0/1:0,49:28:49:1.00:2	0/1:0,57:27:58:1.00:2
chr16	55527113	rs2287074	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,33:31:67:0.493:2	./.	0/1:51,49:31:100:0.490:2	0/1:24,33:31:57:0.579:2	./.	0/1:41,47:32:90:0.534:2	./.	0/1:36,40:31:76:0.526:2
chr16	55536727	rs14070	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:31:7:1.00:2	./.	./.	0/1:27,18:31:45:0.400:2	0/1:0,54:32:54:1.00:2	0/1:32,27:31:59:0.458:2	0/1:27,26:31:53:0.491:2	./.	./.
chr16	55539274	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,4:31:66:0.061:2	./.	./.	./.	./.	./.	./.
chr16	55562466	rs837550	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:96,54:33:150:0.360:2	0/1:66,59:32:125:0.472:2	0/1:0,30:31:30:1.00:2	0/1:76,73:32:149:0.490:2	./.	0/1:96,72:32:168:0.429:2	0/1:0,149:32:149:1.00:2	0/1:102,96:32:198:0.485:2	0/1:1,191:33:192:0.995:2	./.	0/1:105,85:33:190:0.447:2
chr16	55571563	rs10521321	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,62:32:141:0.440:2	./.	./.	0/1:72,43:32:115:0.374:2	0/1:98,65:31:163:0.399:2	./.	./.	0/1:83,75:32:158:0.475:2
chr16	55600965	rs144503508	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,11:30:30:0.367:2	./.	./.	./.	./.	./.	./.	./.
chr16	55601192	rs140109507	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,4:33:58:0.069:2	./.	./.	./.	./.	./.	./.	./.
chr16	55601388	rs1502003	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,30:32:79:0.380:2	0/1:26,30:32:56:0.536:2	./.	0/1:48,54:33:102:0.529:2	0/1:50,38:32:88:0.432:2	0/1:45,43:33:88:0.489:2	./.	0/1:60,41:32:101:0.406:2	0/1:51,38:33:89:0.427:2	0/1:0,62:32:62:1.00:2	0/1:55,40:33:95:0.421:2
chr16	55608587	rs13334083	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,80:31:174:0.460:2	./.	./.	0/1:119,80:31:199:0.402:2	0/1:89,103:31:192:0.536:2	./.	./.	0/1:67,73:33:140:0.521:2
chr16	55731835	rs5569	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:32:7:1.00:2	./.	./.	0/1:33,31:32:64:0.484:2	./.	0/1:37,43:32:80:0.538:2	0/1:51,36:33:87:0.414:2	0/1:0,62:32:62:1.00:2	./.
chr16	55732392	rs138435822	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,78:32:160:0.488:2	0/1:51,40:31:91:0.440:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	55844927	rs139627742	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:9,6:33:15:0.400:2	./.	0/1:46,7:32:53:0.132:2	./.	0/1:49,6:32:55:0.109:2	./.	./.	./.	0/1:29,5:33:34:0.147:2	./.
chr16	55844928	rs375953001	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,15:31:55:0.273:2	./.	0/1:34,13:29:47:0.277:2	./.	0/1:5,29:28:34:0.853:2	./.
chr16	55857570	rs71647871	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:99,35:30:134:0.261:2	./.	./.	./.	./.	./.	./.
chr16	55862682	rs144498758	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,5:31:42:0.119:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	55862691	rs62028647	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:30,10:32:40:0.250:2	0/1:2,3:30:5:0.600:2	0/1:80,7:32:87:0.080:2	0/1:71,13:30:84:0.155:2	./.	0/1:71,18:31:89:0.202:2	0/1:65,11:32:76:0.145:2	0/1:82,6:33:88:0.068:2	./.	0/1:68,4:29:72:0.056:2
chr16	55862717	rs76828834	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:40,4:27:44:0.091:2	0/1:26,5:28:31:0.161:2	./.	0/1:81,5:29:86:0.058:2	0/1:66,6:29:72:0.083:2	./.	0/1:64,10:27:74:0.135:2	0/1:70,5:25:75:0.067:2	0/1:82,5:28:87:0.057:2	./.	0/1:71,5:30:76:0.066:2
chr16	55862720	rs74019278	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:41,3:33:44:0.068:2	0/1:25,5:29:30:0.167:2	./.	0/1:83,5:32:88:0.057:2	0/1:64,6:31:70:0.086:2	./.	0/1:61,10:33:71:0.141:2	0/1:74,5:32:79:0.063:2	0/1:80,5:33:86:0.059:2	./.	0/1:67,5:34:72:0.069:2
chr16	55862762	rs3826194	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:42,9:29:51:0.176:2	0/1:24,3:32:27:0.111:2	./.	./.	./.	./.	0/1:42,4:32:46:0.087:2	./.	./.	./.	0/1:78,7:31:86:0.082:2
chr16	55862791	rs114632091	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:47,11:27:58:0.190:2	0/1:21,8:30:29:0.276:2	./.	0/1:87,9:30:96:0.094:2	0/1:64,8:30:72:0.111:2	./.	./.	0/1:78,6:30:84:0.071:2	./.	./.	0/1:73,7:29:80:0.088:2
chr16	55862824	rs3826192	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,8:31:47:0.170:2	0/1:16,5:31:21:0.238:2	./.	0/1:65,8:30:73:0.110:2	0/1:54,9:32:63:0.143:2	./.	0/1:53,4:29:57:0.070:2	0/1:64,4:32:68:0.059:2	./.	./.	0/1:69,10:33:79:0.127:2
chr16	55862836	rs3826191	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:38,7:30:45:0.156:2	0/1:12,5:32:17:0.294:2	./.	0/1:52,10:31:62:0.161:2	0/1:51,9:31:60:0.150:2	./.	0/1:50,4:31:54:0.074:2	0/1:61,8:30:69:0.116:2	./.	./.	0/1:65,7:31:72:0.097:2
chr16	55862883	rs3826190	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,7:31:35:0.200:2	./.	./.	0/1:26,3:31:29:0.103:2	0/1:27,6:31:33:0.182:2	./.	0/1:27,8:30:35:0.229:2	0/1:30,7:32:37:0.189:2	0/1:37,3:33:40:0.075:2	./.	0/1:27,5:31:32:0.156:2
chr16	55866900	rs12149359	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,9:33:89:0.101:2	./.	0/1:64,14:31:78:0.179:2	./.	./.	./.	0/1:72,8:29:80:0.100:2	./.
chr16	55880480	rs11860456	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,74:31:74:1.00:2	0/1:59,38:31:97:0.392:2	./.	0/1:43,34:32:77:0.442:2	0/1:37,56:32:93:0.602:2	0/1:79,4:34:83:0.048:2	0/1:0,93:31:93:1.00:2	./.
chr16	55880534	rs11860488	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,58:33:58:1.00:2	0/1:34,38:32:72:0.528:2	./.	0/1:42,29:33:71:0.408:2	0/1:38,44:33:82:0.537:2	./.	0/1:0,74:33:74:1.00:2	./.
chr16	55883618	rs2160276	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,29:30:58:0.500:2	0/1:19,7:29:26:0.269:2	0/1:3,3:28:6:0.500:2	0/1:0,57:28:57:1.00:2	0/1:0,52:28:52:1.00:2	0/1:41,24:28:65:0.369:2	0/1:0,54:29:54:1.00:2	0/1:41,39:29:80:0.488:2	0/1:42,32:28:74:0.432:2	0/1:0,43:28:43:1.00:2	0/1:0,56:28:56:1.00:2
chr16	55897289	rs11076126	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,60:31:186:0.323:2	./.	./.	0/1:91,72:32:163:0.442:2
chr16	55903640	rs145577128	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,73:31:135:0.541:2	./.	./.	./.	./.	./.	./.
chr16	55905632	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,4:30:68:0.059:2	./.	./.	./.	./.	./.	./.	./.
chr16	55905636	rs3859108	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:32:42:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,50:32:51:1.00:2
chr16	55905676	rs72810507	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:31:5:0.600:2	0/1:18,16:31:34:0.471:2	./.	0/1:20,13:32:33:0.394:2	0/1:16,12:31:28:0.429:2	0/1:29,16:31:45:0.356:2	0/1:33,8:32:41:0.195:2	0/1:16,11:32:27:0.407:2	./.
chr16	55907811	rs2397965	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,45:32:88:0.511:2	0/1:53,44:31:97:0.454:2	0/1:37,27:30:64:0.422:2	./.	./.	./.	./.	0/1:28,36:32:64:0.563:2
chr16	55909075	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:113,4:32:117:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr16	56368689	rs1065375	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:25,37:31:62:0.597:2	0/1:11,25:32:36:0.694:2	0/1:0,3:30:3:1.00:2	./.	./.	./.	0/1:46,49:31:95:0.516:2	0/1:71,38:31:109:0.349:2	./.	0/1:43,37:31:80:0.463:2	0/1:0,68:32:68:1.00:2
chr16	56377748	rs1799917	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,59:33:101:0.584:2	0/1:85,41:31:126:0.325:2	0/1:43,37:32:80:0.463:2	./.	0/1:76,50:33:126:0.397:2	./.	0/1:58,45:32:103:0.437:2	./.
chr16	56388866	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:31:130:0.031:2	./.	./.	./.
chr16	56401352	rs77132693	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,23:34:61:0.377:2	./.
chr16	56436979	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:33:130:0.031:2	./.	./.	./.
chr16	56485065	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,13:11:76:0.171:2	./.	./.	./.
chr16	56485554	rs11076155	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:12,5:32:17:0.294:2	0/1:12,9:33:21:0.429:2	./.	./.	./.	./.	./.	./.	./.	0/1:10,18:34:28:0.643:2	./.
chr16	56500132	rs34883368	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,49:31:93:0.527:2	./.
chr16	56500176	rs11544885	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,36:32:64:0.563:2	./.
chr16	56504516	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:31:92:0.043:2	./.	./.	./.	./.
chr16	56533694	rs115328064	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,39:29:79:0.494:2	./.	./.	./.	./.	./.	./.	./.
chr16	56533804	rs35294865	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,27:33:75:0.360:2	./.
chr16	56545175	rs11373	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:15,17:34:32:0.531:2	0/1:7,10:32:17:0.588:2	./.	0/1:1,24:32:25:0.960:2	./.	./.	0/1:28,17:34:45:0.378:2	./.	0/1:22,18:34:40:0.450:2	0/1:14,11:34:25:0.440:2	./.
chr16	56548501	rs4784677	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:33:60:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,63:32:64:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,76:32:76:1.00:2
chr16	56601720	rs666636	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,98:32:98:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,23:32:23:1.00:2	0/1:72,63:31:135:0.467:2	0/1:1,105:31:106:0.991:2	0/1:0,116:31:116:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,152:32:152:1.00:2	0/1:0,125:33:125:1.00:2	0/1:1,105:31:106:0.991:2	0/1:0,124:32:124:1.00:2
chr16	56601722	rs666647	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,94:27:96:0.979:2	0/1:0,61:27:61:1.00:2	0/1:0,23:29:23:1.00:2	0/1:70,63:27:134:0.474:2	0/1:1,105:27:106:0.991:2	0/1:0,116:27:116:1.00:2	0/1:0,112:27:112:1.00:2	0/1:0,151:28:151:1.00:2	0/1:0,124:29:124:1.00:2	0/1:1,105:28:106:0.991:2	0/1:0,122:28:122:1.00:2
chr16	56602798	rs11643815	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,65:31:123:0.528:2	./.	0/1:63,48:31:111:0.432:2	0/1:62,50:31:112:0.446:2	./.	./.	./.
chr16	56642617	rs34908770	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,23:31:59:0.390:2	./.
chr16	56643245	rs199958484	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,3:35:71:0.042:2	./.	./.
chr16	56660816	rs72818417	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,28:31:45:0.622:2	./.	./.	./.	./.
chr16	56660841	rs72818418	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,40:32:70:0.571:2	./.	0/1:17,35:32:52:0.673:2	./.	./.	./.	./.
chr16	56667242	rs55963173	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:111,71:31:182:0.390:2	./.	0/1:92,76:32:168:0.452:2	./.	./.	./.	./.
chr16	56667271	rs191944044	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,76:32:144:0.528:2	./.	./.	./.	./.	./.	./.	./.
chr16	56667282	rs1827210	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,36:31:98:0.367:2	0/1:32,22:32:54:0.407:2	0/1:0,7:32:7:1.00:2	0/1:86,56:33:142:0.394:2	0/1:101,62:31:163:0.380:2	0/1:85,55:32:140:0.393:2	./.	0/1:5,131:32:136:0.963:2	0/1:0,133:33:133:1.00:2	0/1:0,126:32:126:1.00:2	0/1:0,97:33:97:1.00:2
chr16	56667673	rs201647695	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:31:59:0.068:2	./.	./.	./.	./.	./.
chr16	56667706	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:30:61:0.066:2	./.	./.	./.	./.	./.
chr16	56673227	rs11640851	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,9:29:27:0.333:2	0/1:9,5:29:14:0.357:2	0/1:3,4:30:7:0.571:2	0/1:15,11:30:26:0.423:2	0/1:9,7:29:16:0.438:2	0/1:22,10:31:32:0.313:2	0/1:16,5:32:21:0.238:2	0/1:1,30:31:31:0.968:2	0/1:34,21:30:55:0.382:2	0/1:0,23:31:23:1.00:2	0/1:0,31:31:31:1.00:2
chr16	56673249	rs11647171	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,8:28:24:0.333:2	./.	0/1:2,4:29:6:0.667:2	0/1:6,10:28:16:0.625:2	0/1:5,5:30:10:0.500:2	0/1:15,7:29:22:0.318:2	0/1:13,6:31:19:0.316:2	0/1:0,23:29:23:1.00:2	0/1:24,16:29:40:0.400:2	0/1:1,20:28:21:0.952:2	0/1:0,20:29:20:1.00:2
chr16	56673828	rs8052394	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,21:34:33:0.636:2	./.	./.	./.	0/1:14,18:32:32:0.563:2	0/1:24,18:32:42:0.429:2	./.	./.	./.	./.	./.
chr16	56686470	rs12051311	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,94:32:94:1.00:2	0/1:2,69:32:71:0.972:2	0/1:9,11:31:20:0.550:2	./.	./.	./.	0/1:50,53:32:103:0.515:2	0/1:1,149:32:150:0.993:2	0/1:62,76:32:138:0.551:2	0/1:85,78:32:163:0.479:2	0/1:71,74:32:145:0.510:2
chr16	56686471	rs964374	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,9:31:21:0.429:2	0/1:2,145:32:147:0.986:2	0/1:1,122:31:123:0.992:2	0/1:0,177:32:177:1.00:2	0/1:54,48:32:102:0.471:2	./.	0/1:80,60:32:140:0.429:2	0/1:84,85:33:169:0.503:2	0/1:76,69:32:145:0.476:2
chr16	56692584	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:32:14:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	56701294	rs2298847	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,35:32:77:0.455:2	0/1:22,28:32:50:0.560:2	0/1:5,11:31:16:0.688:2	0/1:62,35:31:97:0.361:2	./.	./.	./.	./.	0/1:60,48:32:108:0.444:2	./.	./.
chr16	56701926	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,4:32:23:0.174:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	56704438	rs9934181	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,49:33:78:0.628:2
chr16	56716420	rs57664183	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,31:30:81:0.383:2	./.	./.	./.	./.	./.	./.	./.
chr16	56716516	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:31:87:0.046:2
chr16	56792567	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:33:70:0.057:2	./.	./.	./.	./.
chr16	56839439	rs1803870	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,60:30:116:0.517:2	./.	0/1:66,73:31:139:0.525:2	./.	0/1:44,51:31:95:0.537:2	./.
chr16	56855496	rs2118017	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:33:24:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,43:33:43:1.00:2	0/1:0,54:32:54:1.00:2	0/1:21,17:33:38:0.447:2	0/1:0,57:32:57:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,50:33:50:1.00:2
chr16	56864520	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:33:90:0.044:2	./.	./.	./.
chr16	56865887	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.
chr16	56868700	rs1347591	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,13:30:26:0.500:2	0/1:7,11:32:18:0.611:2	0/1:0,2:30:2:1.00:2	0/1:15,13:32:28:0.464:2	0/1:11,9:32:20:0.450:2	./.	./.	0/1:29,32:32:61:0.525:2	0/1:0,62:34:62:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,51:32:51:1.00:2
chr16	56873495	rs1138295	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,37:30:98:0.378:2	./.	./.	./.	./.	./.	0/1:75,70:31:145:0.483:2
chr16	56902221	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,33:32:73:0.452:2	./.	./.	./.	./.
chr16	56904587	rs1529927	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:31:55:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,7:34:7:1.00:2	0/1:0,59:33:59:1.00:2	0/1:0,133:32:133:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,97:32:98:1.00:2	0/1:0,77:33:77:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,55:32:55:1.00:2
chr16	56913513	rs5801	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,48:32:91:0.527:2	./.	./.	0/1:76,55:31:131:0.420:2	./.	./.	./.	./.
chr16	56919271	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	56920969	rs5803	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,99:33:101:0.980:2	0/1:46,40:33:86:0.465:2	0/1:33,38:32:71:0.535:2
chr16	56928519	rs5804	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,87:31:165:0.527:2	0/1:1,154:32:155:0.994:2	0/1:56,70:32:126:0.556:2	0/1:57,52:32:109:0.477:2
chr16	56938387	rs2289115	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,27:32:47:0.574:2	./.	./.	0/1:28,32:32:60:0.533:2	./.	./.	./.	./.
chr16	56947294	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2	./.	./.	./.	./.
chr16	56969148	rs2217332	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,33:31:90:0.367:2	./.	./.	./.	./.	./.	./.	./.
chr16	56976064	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,56:32:112:0.500:2	./.	./.	./.	./.
chr16	57005301	rs1532625	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,51:30:52:0.981:2	0/1:0,30:32:30:1.00:2	./.	0/1:46,56:31:102:0.549:2	0/1:0,129:31:129:1.00:2	0/1:0,98:30:98:1.00:2	0/1:90,55:31:145:0.379:2	0/1:76,60:32:137:0.441:2	0/1:73,35:31:109:0.324:2	0/1:33,33:32:66:0.500:2	0/1:54,42:31:96:0.438:2
chr16	57007353	rs5883	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,26:31:72:0.361:2	./.	./.	./.	./.
chr16	57012012	rs5881	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,11:32:63:0.175:2	./.	./.	./.	./.	./.	./.
chr16	57015076	rs34855278	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,12:33:28:0.429:2	./.	./.	./.	./.	./.	./.	./.
chr16	57015530	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,4:32:37:0.108:2	./.
chr16	57015545	rs1800774	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,20:30:20:1.00:2	0/1:0,15:31:15:1.00:2	./.	0/1:0,27:31:27:1.00:2	0/1:13,4:31:17:0.235:2	0/1:18,11:31:29:0.379:2	./.	0/1:0,19:31:19:1.00:2	./.	./.	0/1:25,18:32:43:0.419:2
chr16	57016092	rs5882	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:32:43:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,74:31:74:1.00:2	0/1:1,94:31:95:0.989:2	0/1:2,79:31:81:0.975:2	./.	0/1:1,95:31:96:0.990:2	0/1:47,32:32:79:0.405:2	0/1:41,41:32:82:0.500:2	0/1:23,26:32:49:0.531:2
chr16	57059427	rs74439742	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,81:32:81:1.00:2	./.	0/1:37,39:31:76:0.513:2	0/1:44,33:32:77:0.429:2	0/1:38,42:31:80:0.525:2	0/1:56,42:33:98:0.429:2	./.	0/1:47,36:32:83:0.434:2
chr16	57060213	rs9938543	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,22:31:47:0.468:2	./.	./.	./.	./.
chr16	57060340	rs34531240	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:33:11:0.545:2	./.	./.	./.	0/1:46,39:32:85:0.459:2	./.	./.	./.	./.
chr16	57060353	rs28438857	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:26:8:0.500:2	./.	./.	./.	0/1:46,35:28:81:0.432:2	./.	./.	./.	./.
chr16	57060724	rs13339199	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:43,36:32:79:0.456:2	0/1:26,18:32:44:0.409:2	0/1:14,6:31:20:0.300:2	./.	0/1:77,64:31:141:0.454:2	./.	./.	./.	./.	./.	./.
chr16	57063675	rs79189186	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	57067595	rs58124158	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,20:32:45:0.444:2	0/1:20,10:31:30:0.333:2	./.	0/1:0,46:31:46:1.00:2	0/1:30,14:30:44:0.318:2	0/1:21,25:31:46:0.543:2	0/1:19,16:31:35:0.457:2	0/1:46,20:29:66:0.303:2	0/1:26,31:32:57:0.544:2	./.	0/1:28,25:31:53:0.472:2
chr16	57068107	rs3995817	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:32:7:0.857:2	./.	./.	./.	0/1:33,49:32:82:0.598:2	./.	./.	./.	./.
chr16	57071113	rs1684579	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:29:23:1.00:2	0/1:0,19:29:19:1.00:2	0/1:8,5:30:13:0.385:2	0/1:0,54:29:54:1.00:2	0/1:0,106:29:106:1.00:2	0/1:0,56:29:56:1.00:2	0/1:0,65:29:65:1.00:2	0/1:2,78:29:80:0.975:2	0/1:0,59:30:59:1.00:2	0/1:0,34:29:34:1.00:2	0/1:27,21:30:48:0.438:2
chr16	57071114	rs1672867	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:29:22:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,54:29:54:1.00:2	0/1:0,106:28:106:1.00:2	0/1:0,56:29:56:1.00:2	0/1:0,65:29:65:1.00:2	0/1:2,78:28:80:0.975:2	0/1:0,59:29:59:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,48:30:48:1.00:2
chr16	57073683	rs864750	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:32:25:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,29:32:29:1.00:2	0/1:31,19:33:50:0.380:2
chr16	57075406	rs56171037	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,40:33:95:0.421:2	./.	./.	./.	./.
chr16	57080528	rs289723	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,15:29:43:0.349:2	0/1:29,40:29:69:0.580:2	./.	./.	0/1:25,28:31:53:0.528:2	./.	./.
chr16	57091977	rs7206703	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,29:33:53:0.547:2	./.	./.	./.	./.
chr16	57093436	rs117950337	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:27,22:29:49:0.449:2	0/1:17,13:31:30:0.433:2	./.	./.	./.	./.	./.	./.	./.	0/1:19,31:30:50:0.620:2	./.
chr16	57101340	rs7190199	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,11:33:23:0.478:2	./.	./.	./.	0/1:55,52:32:107:0.486:2	./.	./.	./.	./.
chr16	57101373	rs7185320	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:30:15:0.533:2	./.	./.	./.	0/1:52,46:30:98:0.469:2	./.	./.	./.	./.
chr16	57111232	rs11864231	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:28,26:29:54:0.481:2	0/1:17,27:32:44:0.614:2	./.	0/1:40,49:31:89:0.551:2	./.	./.	./.	./.	./.	0/1:33,27:29:60:0.450:2	0/1:40,42:31:82:0.512:2
chr16	57151398	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:29:88:0.045:2	./.	./.	./.	./.	./.
chr16	57206707	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,5:31:121:0.041:2	./.	0/1:113,4:32:117:0.034:2	./.
chr16	57246986	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:32:69:0.058:2	./.	./.	./.
chr16	57250002	rs201071702	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,9:15:23:0.391:2	./.	0/1:12,6:14:18:0.333:2
chr16	57255243	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:31:154:0.026:2	./.	./.	./.	./.	./.
chr16	57392733	rs4359426	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:32:70:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,90:33:90:1.00:2	0/1:95,52:32:147:0.354:2	0/1:0,81:32:81:1.00:2	0/1:85,62:33:147:0.422:2	0/1:0,124:32:124:1.00:2	0/1:0,92:33:92:1.00:2	0/1:0,75:33:75:1.00:2	0/1:0,73:32:73:1.00:2
chr16	57397449	rs2229161	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,18:32:51:0.353:2	0/1:18,21:33:39:0.538:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	57464236	rs170358	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,53:33:101:0.525:2
chr16	57470564	rs17375948	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:40,21:33:61:0.344:2	0/1:29,10:32:39:0.256:2	./.	0/1:51,44:33:95:0.463:2	./.	0/1:55,33:31:88:0.375:2	./.	./.	./.	./.	./.
chr16	57470621	rs377204698	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,37:32:75:0.493:2	./.
chr16	57474687	rs11557674	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:27,15:33:42:0.357:2	0/1:22,12:31:34:0.353:2	./.	0/1:40,21:33:61:0.344:2	./.	0/1:33,19:32:52:0.365:2	./.	./.	./.	./.	./.
chr16	57481448	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:31:8:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr16	57484980	rs223864	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,32:31:78:0.410:2
chr16	57493489	.	A	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,7:25:60:0.117:2	./.	0/1:73,5:24:78:0.064:2	./.	0/1:44,4:28:48:0.083:2	0/1:64,5:27:69:0.072:2
chr16	57496931	rs223837	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:33:198:0.025:2	0/1:118,77:32:195:0.395:2	./.	0/1:106,74:32:181:0.411:2
chr16	57499902	rs4937	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,176:33:178:0.994:2	0/1:1,134:32:135:0.993:2	0/1:11,12:32:23:0.522:2	0/1:0,175:33:175:1.00:2	0/1:100,79:31:179:0.441:2	0/1:0,188:32:188:1.00:2	0/1:106,86:33:192:0.448:2	0/1:94,97:33:191:0.508:2	0/1:0,158:33:158:1.00:2	0/1:0,170:32:170:1.00:2	0/1:3,163:32:166:0.982:2
chr16	57507546	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,68:30:143:0.476:2	./.	./.	./.	./.	./.	./.	./.
chr16	57552088	rs28756858	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,5:30:17:0.294:2	./.	0/1:2,3:30:5:0.600:2	0/1:8,4:29:12:0.333:2	0/1:0,9:31:9:1.00:2	./.	./.	0/1:6,7:29:13:0.538:2
chr16	57555076	rs28446687	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,27:32:84:0.321:2	./.	0/1:38,38:31:76:0.500:2	0/1:70,53:31:123:0.431:2	0/1:4,97:32:101:0.960:2	./.	./.	0/1:43,36:32:79:0.456:2
chr16	57595999	rs1004363	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,124:30:125:0.992:2	./.	0/1:44,46:29:90:0.511:2	0/1:48,37:29:85:0.435:2	0/1:58,73:29:131:0.557:2	0/1:43,49:30:92:0.533:2	./.	0/1:60,41:30:101:0.406:2
chr16	57597126	rs114907317	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,25:32:67:0.379:2	./.
chr16	57601792	rs9937918	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,20:29:47:0.426:2	./.	0/1:31,11:30:42:0.262:2	0/1:33,38:31:71:0.535:2	0/1:36,53:31:89:0.596:2	0/1:24,13:31:37:0.351:2	./.	./.
chr16	57624524	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:32:82:0.049:2	./.	./.
chr16	57685304	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,53:30:123:0.431:2
chr16	57689385	rs1801257	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,7:32:23:0.304:2	./.	0/1:0,10:31:10:1.00:2	0/1:18,9:33:27:0.333:2	0/1:14,10:32:24:0.417:2	./.	0/1:9,10:32:19:0.526:2	./.
chr16	57689805	rs1801255	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,39:30:66:0.591:2	./.	0/1:23,28:30:51:0.549:2	0/1:33,32:30:65:0.492:2	0/1:0,60:29:60:1.00:2	./.	0/1:33,18:31:51:0.353:2	./.
chr16	57689883	rs1376041	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:32:31:1.00:2	0/1:0,23:33:23:1.00:2	0/1:2,4:34:6:0.667:2	0/1:0,46:33:46:1.00:2	./.	0/1:0,43:32:43:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,64:32:64:1.00:2	./.	0/1:0,29:33:29:1.00:2	0/1:0,33:32:33:1.00:2
chr16	57702274	rs62039891	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:6,8:32:14:0.571:2	0/1:2,11:31:13:0.846:2	./.	0/1:6,12:31:18:0.667:2	./.	0/1:2,4:29:6:0.667:2	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.
chr16	57702304	rs138354738	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,4:30:19:0.211:2	./.	./.
chr16	57707273	rs138710313	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,48:30:115:0.417:2	./.	./.	./.
chr16	57713217	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,20:27:49:0.408:2	./.	./.	./.	./.	./.
chr16	57722328	rs12444859	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:45,35:33:80:0.438:2	0/1:24,25:32:49:0.510:2	./.	0/1:45,65:32:110:0.591:2	./.	./.	0/1:60,69:32:129:0.535:2	0/1:107,48:33:155:0.310:2	./.	0/1:49,59:32:108:0.546:2	0/1:34,39:33:73:0.534:2
chr16	57735900	rs7196016	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,81:32:192:0.422:2	./.	./.	0/1:69,54:31:123:0.439:2
chr16	57738810	rs58373934	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,11:31:25:0.440:2	./.	0/1:14,17:32:31:0.548:2	./.	0/1:26,25:32:51:0.490:2	0/1:14,15:32:29:0.517:2	./.
chr16	57756643	rs3809611	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,32:33:68:0.471:2	./.	./.	0/1:21,30:33:51:0.588:2
chr16	57760753	rs140120172	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,41:29:80:0.513:2	./.	./.
chr16	57762401	rs2923147	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,87:29:190:0.458:2	./.	./.	./.	0/1:54,62:30:116:0.534:2	0/1:79,61:29:141:0.436:2
chr16	57771126	rs1061546	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:24,14:30:38:0.368:2	0/1:13,14:31:27:0.519:2	./.	./.	0/1:30,36:29:66:0.545:2	./.	0/1:29,31:29:60:0.517:2	0/1:37,45:30:82:0.549:2	./.	./.	0/1:34,35:31:69:0.507:2
chr16	57775651	rs146372886	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,53:32:89:0.596:2	./.	./.	./.	./.	./.	./.	./.
chr16	57786517	rs2965797	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,11:31:20:0.550:2	0/1:5,6:31:11:0.545:2	0/1:0,2:31:2:1.00:2	0/1:14,16:31:30:0.533:2	0/1:17,21:31:38:0.553:2	0/1:0,32:31:32:1.00:2	0/1:14,14:31:28:0.500:2	0/1:30,16:30:46:0.348:2	0/1:0,20:32:20:1.00:2	0/1:9,21:31:30:0.700:2	0/1:12,8:30:20:0.400:2
chr16	57786711	rs2965798	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,10:31:30:0.333:2	0/1:12,8:32:20:0.400:2	0/1:0,5:32:5:1.00:2	0/1:30,25:31:55:0.455:2	0/1:52,38:29:90:0.422:2	0/1:0,78:31:78:1.00:2	0/1:36,23:30:59:0.390:2	./.	0/1:0,51:32:51:1.00:2	0/1:23,24:30:47:0.511:2	0/1:14,35:29:49:0.714:2
chr16	57787027	rs12922275	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,30:32:58:0.517:2	./.	0/1:10,15:31:25:0.600:2	./.
chr16	57795343	rs12920931	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,103:31:177:0.582:2	./.	0/1:51,46:32:97:0.474:2	./.
chr16	57795394	rs2967172	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,33:31:72:0.458:2	0/1:13,23:31:36:0.639:2	0/1:1,8:31:9:0.889:2	0/1:85,59:32:144:0.410:2	0/1:93,73:31:166:0.440:2	0/1:0,87:30:87:1.00:2	0/1:80,75:31:155:0.484:2	./.	0/1:1,111:32:112:0.991:2	0/1:45,44:31:89:0.494:2	0/1:42,59:31:101:0.584:2
chr16	57805176	rs2967165	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,139:31:141:0.993:2	0/1:1,78:32:79:0.987:2	0/1:0,17:32:17:1.00:2	0/1:0,180:31:180:1.00:2	0/1:117,77:31:194:0.397:2	0/1:0,182:32:182:1.00:2	0/1:1,156:32:157:0.994:2	0/1:109,88:31:197:0.447:2	0/1:1,178:32:179:0.994:2	0/1:3,115:31:119:0.975:2	0/1:67,50:31:117:0.427:2
chr16	57935443	rs16942445	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,45:32:132:0.341:2	./.	./.	./.	./.	./.	./.	./.
chr16	57937788	rs2303785	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,7:34:18:0.389:2	./.	./.	./.	./.	./.	./.	0/1:54,39:32:93:0.419:2	./.
chr16	57937856	rs413562	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,52:28:52:1.00:2	0/1:0,37:27:37:1.00:2	./.	0/1:0,88:28:88:1.00:2	0/1:55,29:27:84:0.345:2	0/1:0,86:28:86:1.00:2	./.	0/1:69,42:27:113:0.378:2	0/1:0,81:30:81:1.00:2	./.	0/1:0,59:27:59:1.00:2
chr16	57938755	rs17821412	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,35:30:67:0.522:2	./.
chr16	57949224	rs10459809	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:30:7:1.00:2	0/1:46,32:30:78:0.410:2	./.	./.	./.	./.	0/1:31,42:31:73:0.575:2	./.	./.
chr16	57950057	rs376270	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,43:31:109:0.394:2	0/1:46,45:30:91:0.495:2	./.	./.	./.	./.	0/1:63,36:31:99:0.364:2	./.
chr16	57953010	rs35424571	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,47:33:119:0.395:2	./.	./.	./.	./.	./.	./.	./.
chr16	57957216	rs12927214	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:30:7:0.571:2	0/1:22,13:28:35:0.371:2	./.	./.	./.	./.	./.	./.	./.
chr16	57996932	rs17821448	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:25,10:27:38:0.286:2	0/1:12,8:30:20:0.400:2	./.	0/1:39,20:30:60:0.339:2	./.	./.	0/1:1,36:30:37:0.973:2	./.	0/1:28,14:27:43:0.333:2	0/1:23,6:28:30:0.207:2	0/1:23,14:30:37:0.378:2
chr16	57996960	rs13336595	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,28:31:28:1.00:2	0/1:0,16:31:16:1.00:2	./.	0/1:39,17:31:56:0.304:2	0/1:0,99:31:99:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,68:31:68:1.00:2	0/1:30,16:31:46:0.348:2	0/1:0,28:31:29:1.00:2	0/1:0,33:31:33:1.00:2
chr16	58001086	rs61997250	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,30:31:57:0.526:2	0/1:24,34:32:58:0.586:2	./.	./.	./.	./.	./.
chr16	58011851	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:34:102:0.039:2	./.	./.	./.	./.	./.
chr16	58019396	rs9934227	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,76:30:78:0.987:2	0/1:0,46:31:46:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,91:30:91:1.00:2	0/1:70,57:30:128:0.449:2	0/1:64,27:30:91:0.297:2	0/1:1,61:30:62:0.984:2	0/1:0,115:30:115:1.00:2	0/1:1,97:31:98:0.990:2	0/1:34,54:30:88:0.614:2	0/1:30,25:30:55:0.455:2
chr16	58030634	rs3743556	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:29:46:1.00:2	0/1:1,18:29:19:0.947:2	0/1:0,5:29:5:1.00:2	0/1:1,57:29:59:0.983:2	./.	./.	0/1:1,69:28:70:0.986:2	0/1:44,36:29:80:0.450:2	0/1:0,58:30:59:1.00:2	0/1:25,27:29:53:0.519:2	0/1:16,15:30:31:0.484:2
chr16	58032026	rs56347618	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:32:9:0.444:2	./.	./.	./.	./.	./.	0/1:4,10:29:14:0.714:2	./.
chr16	58035429	rs3743559	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,36:32:81:0.444:2	0/1:43,48:31:91:0.527:2	./.	0/1:49,44:32:93:0.473:2	./.	./.	./.
chr16	58054099	rs16959641	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,82:33:179:0.458:2	0/1:103,85:33:189:0.452:2	./.	0/1:100,87:33:187:0.465:2	./.	./.	./.
chr16	58074509	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:33:86:0.047:2	./.	./.
chr16	58074601	rs141397712	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,34:32:55:0.618:2	./.	./.	./.	./.	./.	./.	./.
chr16	58147934	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,6:32:91:0.066:2
chr16	58296405	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:32:56:0.071:2	./.
chr16	58314433	rs2241414	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:72,63:29:135:0.467:2	0/1:57,33:28:90:0.367:2	./.	0/1:88,87:29:175:0.497:2	./.	./.	./.	0/1:110,74:29:184:0.402:2	./.	0/1:81,56:28:137:0.409:2	./.
chr16	58314598	rs1052276	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:22,15:31:38:0.405:2	0/1:15,19:32:34:0.559:2	./.	0/1:25,14:30:39:0.359:2	./.	./.	./.	0/1:28,32:32:60:0.533:2	./.	0/1:17,22:32:39:0.564:2	./.
chr16	58318604	rs3815803	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,42:32:88:0.477:2	0/1:35,31:32:66:0.470:2	0/1:42,45:32:87:0.517:2	0/1:44,37:31:81:0.457:2	0/1:64,74:32:138:0.536:2	./.	./.	./.
chr16	58327646	rs2288012	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,12:30:28:0.429:2	0/1:5,7:32:12:0.583:2	./.	0/1:0,32:32:32:1.00:2	0/1:22,12:32:34:0.353:2	0/1:0,43:32:43:1.00:2	0/1:23,25:33:48:0.521:2	0/1:0,50:32:50:1.00:2	./.	0/1:20,16:32:36:0.444:2	./.
chr16	58538556	rs112262350	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,39:30:102:0.382:2	0/1:29,29:31:58:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	58540531	rs2271948	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,18:30:33:0.545:2	0/1:1,3:32:4:0.750:2	./.	0/1:0,35:32:35:1.00:2	0/1:16,15:32:31:0.484:2	0/1:14,12:32:26:0.462:2	0/1:16,25:30:41:0.610:2	0/1:25,19:30:44:0.432:2	./.	0/1:18,23:30:41:0.561:2	0/1:27,10:33:37:0.270:2
chr16	58540875	rs17821543	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,30:30:56:0.536:2	./.	./.	./.	./.	./.	./.	./.
chr16	58541923	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,38:29:62:0.613:2	./.	./.	./.	./.	./.
chr16	58542901	rs867583	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,11:31:26:0.423:2	0/1:9,13:29:22:0.591:2	./.	0/1:35,21:31:56:0.375:2	0/1:32,15:30:47:0.319:2	0/1:31,16:31:47:0.340:2	0/1:43,17:29:60:0.283:2	0/1:32,23:31:55:0.418:2	./.	0/1:31,18:30:49:0.367:2	0/1:24,20:30:44:0.455:2
chr16	58545426	rs42945	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,30:28:74:0.405:2	0/1:20,11:28:31:0.355:2	./.	0/1:42,33:29:75:0.440:2	0/1:54,26:29:80:0.325:2	0/1:34,35:29:69:0.507:2	0/1:0,52:29:52:1.00:2	0/1:62,34:29:96:0.354:2	./.	0/1:0,40:27:40:1.00:2	0/1:26,18:28:44:0.409:2
chr16	58549932	rs4784046	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2
chr16	58550484	rs3743567	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,39:30:84:0.464:2	./.
chr16	58552714	rs141326823	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,4:31:69:0.058:2	./.	./.	./.	./.	./.	./.
chr16	58552921	rs3607	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,19:32:33:0.576:2	0/1:2,4:32:6:0.667:2	./.	0/1:1,20:29:21:0.952:2	0/1:0,21:30:21:1.00:2	0/1:15,8:32:23:0.348:2	0/1:0,28:32:28:1.00:2	0/1:9,6:31:15:0.400:2	./.	0/1:0,25:32:25:1.00:2	0/1:13,13:31:26:0.500:2
chr16	58565917	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,3:33:42:0.071:2	./.	./.	./.	./.	./.	./.
chr16	58575489	rs11540994	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:55,36:32:91:0.396:2	0/1:20,18:32:38:0.474:2	./.	0/1:0,86:31:86:1.00:2	0/1:0,57:32:57:1.00:2	0/1:54,34:31:88:0.386:2	0/1:2,35:32:37:0.946:2	0/1:61,52:32:113:0.460:2	./.	0/1:52,31:32:83:0.373:2	0/1:75,38:32:113:0.336:2
chr16	58577421	rs41260	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,27:32:46:0.587:2	0/1:21,18:32:39:0.462:2	./.	0/1:0,46:32:47:1.00:2	0/1:0,34:31:34:1.00:2	0/1:26,30:31:56:0.536:2	0/1:0,35:32:35:1.00:2	0/1:24,12:32:36:0.333:2	./.	0/1:0,37:32:37:1.00:2	0/1:21,28:33:49:0.571:2
chr16	58579274	rs246258	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,75:31:193:0.389:2	./.
chr16	58587737	rs11866002	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,13:32:39:0.333:2	0/1:10,11:32:21:0.524:2	./.	0/1:1,55:32:56:0.982:2	0/1:0,28:31:28:1.00:2	0/1:36,28:31:64:0.438:2	0/1:0,41:32:41:1.00:2	0/1:46,17:31:63:0.270:2	./.	0/1:19,20:31:39:0.513:2	0/1:41,24:32:65:0.369:2
chr16	58589187	rs9941175	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,23:32:53:0.434:2	./.	./.	./.	./.
chr16	58589213	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:34:75:0.053:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	58594236	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:31:125:0.032:2	./.
chr16	58616984	rs17854029	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:44,45:33:89:0.506:2	0/1:26,34:32:60:0.567:2	0/1:0,18:32:18:1.00:2	./.	./.	0/1:58,46:32:104:0.442:2	./.	0/1:67,65:32:132:0.492:2	0/1:0,126:34:126:1.00:2	./.	0/1:0,87:32:87:1.00:2
chr16	58622766	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:32:84:0.048:2	./.	./.
chr16	58713798	rs7191331	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,8:31:18:0.444:2	0/1:12,10:31:22:0.455:2	./.	0/1:25,18:31:43:0.419:2	0/1:28,32:30:60:0.533:2	0/1:17,21:29:38:0.553:2	0/1:35,37:30:72:0.514:2	0/1:26,35:31:61:0.574:2	./.	./.	0/1:11,23:31:34:0.676:2
chr16	58713894	rs7193572	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,14:31:37:0.378:2	0/1:43,40:30:83:0.482:2	./.	./.	./.	./.
chr16	58713998	rs34698978	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,34:31:72:0.472:2	0/1:68,38:32:106:0.358:2	./.	./.	./.	./.
chr16	58743454	rs30842	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,50:32:50:1.00:2	0/1:0,24:31:24:1.00:2	./.	0/1:0,83:32:83:1.00:2	0/1:0,85:31:85:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,120:32:120:1.00:2	0/1:0,119:32:119:1.00:2	./.	0/1:0,66:32:66:1.00:2	0/1:0,67:32:67:1.00:2
chr16	58750604	rs1058192	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,27:31:27:1.00:2	./.	0/1:0,61:31:61:1.00:2	0/1:60,43:31:103:0.417:2	0/1:0,67:31:67:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,77:31:77:1.00:2	./.	0/1:0,67:32:67:1.00:2	0/1:34,35:31:69:0.507:2
chr16	58752466	rs11076256	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,17:33:38:0.447:2	0/1:9,13:32:22:0.591:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	58757668	rs14221	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,113:32:113:1.00:2	0/1:0,64:32:64:1.00:2	./.	0/1:1,108:33:109:0.991:2	0/1:73,68:33:141:0.482:2	0/1:1,115:32:116:0.991:2	0/1:1,101:33:102:0.990:2	0/1:0,148:32:148:1.00:2	./.	0/1:1,84:32:85:0.988:2	0/1:85,61:33:147:0.418:2
chr16	58757683	rs257636	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,145:29:145:1.00:2	0/1:0,76:28:76:1.00:2	./.	0/1:1,132:29:133:0.992:2	0/1:69,81:29:150:0.540:2	0/1:1,135:29:136:0.993:2	0/1:2,124:29:126:0.984:2	0/1:1,165:29:166:0.994:2	./.	0/1:0,107:29:107:1.00:2	0/1:104,74:29:178:0.416:2
chr16	58768129	rs11558171	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,7:30:10:0.700:2	0/1:2,5:31:7:0.714:2	./.	./.	./.	0/1:4,14:29:18:0.778:2	0/1:1,5:29:6:0.833:2	0/1:11,16:30:27:0.593:2	./.	./.	./.
chr16	61687701	rs16963768	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,16:31:37:0.432:2	./.	./.	./.
chr16	61689597	rs34124175	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,56:32:107:0.523:2	./.	./.
chr16	65016087	rs35213	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,75:30:157:0.478:2	0/1:54,53:30:107:0.495:2	0/1:0,24:29:24:1.00:2	0/1:1,183:30:184:0.995:2	0/1:0,181:29:181:1.00:2	0/1:0,184:29:184:1.00:2	0/1:84,97:29:181:0.536:2	0/1:0,192:30:193:1.00:2	0/1:0,175:30:175:1.00:2	0/1:95,81:30:176:0.460:2	0/1:91,103:29:194:0.531:2
chr16	65022114	rs28216	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:93,92:32:185:0.497:2	0/1:55,67:32:122:0.549:2	0/1:21,20:31:41:0.488:2	0/1:96,85:32:181:0.470:2	0/1:85,94:32:179:0.525:2	0/1:104,76:32:180:0.422:2	0/1:105,83:32:188:0.441:2	./.	./.	./.	0/1:108,83:32:191:0.435:2
chr16	65022234	rs1130821	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,53:30:110:0.482:2	0/1:32,25:31:57:0.439:2	./.	./.	./.	0/1:37,33:29:70:0.471:2	./.	0/1:63,31:30:94:0.330:2	./.	./.	./.
chr16	65025718	rs35195	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,18:32:29:0.621:2	0/1:92,70:31:162:0.432:2	0/1:93,75:31:169:0.446:2	0/1:104,85:31:189:0.450:2	0/1:106,83:32:189:0.439:2	./.	./.	./.	0/1:107,57:32:164:0.348:2
chr16	65038674	rs35182	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,41:30:71:0.577:2	./.	./.	./.	./.
chr16	66420885	rs1130844	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,8:29:15:0.533:2	0/1:55,68:30:123:0.553:2	0/1:68,51:30:119:0.429:2	0/1:0,92:30:92:1.00:2	0/1:76,55:30:131:0.420:2	0/1:67,66:30:134:0.496:2	./.	./.	0/1:1,84:32:86:0.988:2
chr16	66432381	rs16956504	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,33:32:81:0.407:2	0/1:53,44:33:97:0.454:2	./.	./.	./.	0/1:1,45:32:46:0.978:2
chr16	66432423	rs1049970	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,41:33:71:0.577:2	0/1:18,18:31:36:0.500:2	0/1:4,7:31:11:0.636:2	0/1:0,84:32:84:1.00:2	0/1:58,60:32:118:0.508:2	0/1:0,87:32:87:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,101:32:101:1.00:2	0/1:60,66:33:126:0.524:2	0/1:54,41:30:95:0.432:2	0/1:0,65:32:65:1.00:2
chr16	66432424	rs3826229	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,48:32:85:0.565:2	0/1:57,60:32:117:0.513:2	0/1:1,86:32:87:0.989:2	0/1:70,43:32:114:0.381:2	./.	./.	./.	0/1:0,65:31:65:1.00:2
chr16	66434805	rs150701187	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,56:32:103:0.544:2	./.
chr16	66436836	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,17:30:23:0.739:2	./.	./.	./.	./.	./.
chr16	66583994	rs3743715	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,3:32:15:0.200:2	./.	./.	./.
chr16	66584002	rs3743716	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,11:31:23:0.478:2	./.	0/1:15,4:31:19:0.211:2	./.	./.	0/1:5,3:32:8:0.375:2
chr16	66600479	rs7193473	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,23:32:59:0.390:2	./.	0/1:43,41:32:84:0.488:2	./.	./.	0/1:24,19:32:43:0.442:2
chr16	66600766	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:32:99:0.040:2	./.
chr16	66613525	rs11553598	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,10:30:28:0.357:2	./.	./.	./.	./.	./.
chr16	66614008	rs2290182	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,97:32:194:0.500:2	./.	./.	./.	./.	0/1:105,84:33:189:0.444:2
chr16	66792714	rs363156	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,13:30:41:0.317:2	./.	0/1:22,15:30:37:0.405:2	0/1:28,23:30:51:0.451:2	0/1:31,27:30:58:0.466:2	./.	0/1:18,24:30:42:0.571:2	0/1:0,61:31:61:1.00:2
chr16	66793115	rs142204236	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:33:51:0.078:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	66812797	rs363162	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:32:4:0.750:2	0/1:47,30:31:77:0.390:2	./.	0/1:0,67:31:67:1.00:2	0/1:37,51:32:89:0.580:2	0/1:75,52:31:127:0.409:2	./.	0/1:44,30:32:74:0.405:2	0/1:0,68:32:68:1.00:2
chr16	66855404	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:33:66:0.061:2	./.	./.	./.
chr16	66880965	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:32:87:0.046:2	./.	./.
chr16	66919929	rs17767794	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,16:32:33:0.485:2	./.	./.	0/1:31,28:32:59:0.475:2
chr16	66920331	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:30:10:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	66920452	rs11861556	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,53:30:132:0.402:2	./.	./.	./.	./.	./.
chr16	66920510	rs28398401	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,78:33:161:0.484:2	./.	./.	0/1:89,103:33:192:0.536:2
chr16	66920857	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,82:33:162:0.506:2	./.
chr16	66920949	rs10153119	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,52:31:143:0.364:2	./.	./.	0/1:75,80:31:155:0.516:2
chr16	66921256	rs889526	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,32:32:66:0.485:2	./.	./.	./.	./.	./.
chr16	66921388	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:31:122:0.033:2	./.	./.	./.	./.	./.
chr16	66948130	rs2271023	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,55:31:111:0.495:2
chr16	66975079	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:33:60:0.067:2	./.	./.	./.	./.	./.
chr16	66997756	rs71647892	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,51:33:92:0.554:2	0/1:47,31:32:78:0.397:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	67006838	rs3848289	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,41:32:91:0.451:2
chr16	67037054	rs61744399	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,41:29:83:0.494:2
chr16	67166731	rs34017457	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,82:32:174:0.471:2
chr16	67180171	rs7184692	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,38:33:108:0.352:2	0/1:41,28:32:69:0.406:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,74:33:174:0.425:2
chr16	67200235	rs375017943	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,35:30:56:0.625:2
chr16	67200247	rs372473149	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,55:30:97:0.567:2	./.	./.	./.
chr16	67200249	rs201403716	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,9:16:71:0.127:2	0/1:88,17:13:105:0.162:2	./.	0/1:50,12:12:62:0.194:2	./.	./.
chr16	67201035	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:181,4:32:185:0.022:2	./.	./.	./.	./.	./.	./.
chr16	67208109	rs2233457	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,20:32:45:0.444:2	./.	./.
chr16	67214346	rs7186508	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,4:32:68:0.060:2	./.	./.	./.	./.	./.	./.	0/1:11,16:29:27:0.593:2
chr16	67214425	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,4:32:89:0.045:2	./.	./.	./.	./.	./.	./.	./.
chr16	67219107	rs9939768	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,32:33:52:0.615:2
chr16	67222676	rs13334403	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,47:31:98:0.480:2
chr16	67223544	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,61:32:128:0.477:2	./.	./.	./.	./.	./.	./.	./.
chr16	67233243	rs75193761	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,8:31:15:0.533:2	./.	./.
chr16	67233266	rs12923138	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,9:33:14:0.643:2	./.	0/1:8,3:34:11:0.273:2	0/1:5,6:34:11:0.545:2	./.	./.	0/1:4,7:30:11:0.636:2	0/1:2,5:33:7:0.714:2
chr16	67234134	rs8058861	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,29:32:63:0.460:2
chr16	67235672	rs33948247	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:17,9:31:26:0.346:2	0/1:13,12:32:25:0.480:2	./.	./.	0/1:23,17:30:40:0.425:2	./.	./.	./.	./.	./.	./.
chr16	67241930	rs34595673	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,50:33:85:0.588:2
chr16	67265360	rs6499118	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,57:33:104:0.548:2
chr16	67268008	rs77958237	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,24:33:58:0.414:2
chr16	67268131	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	67286521	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:32:98:0.041:2
chr16	67286590	rs61740454	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,59:32:129:0.457:2
chr16	67304752	rs190492342	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,22:31:64:0.344:2	./.	./.	./.	./.
chr16	67304977	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:32:55:0.073:2	./.	./.	./.	./.	./.
chr16	67315949	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,41:30:141:0.291:2	./.	./.	./.	./.	./.	./.
chr16	67318242	rs8044843	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,20:31:38:0.526:2
chr16	67318828	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,8:25:15:0.533:2	./.
chr16	67320920	rs785029	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:20,23:30:43:0.535:2	0/1:15,16:30:31:0.516:2	./.	./.	0/1:55,40:30:95:0.421:2	./.	./.	./.	0/1:31,26:31:57:0.456:2	./.	./.
chr16	67322281	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,4:32:19:0.211:2	./.	./.
chr16	67322414	rs11556908	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,25:31:54:0.463:2
chr16	67327788	rs74901862	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,4:21:16:0.250:2	./.	./.
chr16	67328054	rs201132591	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,47:31:84:0.560:2	0/1:26,18:31:44:0.409:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	67329222	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,4:31:112:0.036:2	./.	./.	./.	./.	./.	./.	./.
chr16	67381383	rs79636320	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,10:29:16:0.625:2	./.	./.	./.	./.	./.	./.	0/1:57,36:30:93:0.387:2	./.
chr16	67434917	rs34229857	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,76:32:146:0.524:2
chr16	67572918	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:31:87:0.046:2	./.	./.	./.	./.	./.
chr16	67578257	rs61744916	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,15:32:35:0.429:2
chr16	67645215	rs376744931	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:28:47:0.085:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	67655344	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:33:71:0.056:2	./.	./.
chr16	67685191	rs201745158	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,64:31:131:0.489:2	./.	./.	./.	./.
chr16	67691515	rs14920	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,26:30:80:0.325:2	./.	./.	./.	./.	./.
chr16	67691668	rs6979	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,40:32:85:0.471:2	./.	0/1:1,89:31:90:0.989:2	0/1:49,51:32:100:0.510:2	./.	0/1:33,46:33:79:0.582:2	0/1:44,36:33:80:0.450:2	0/1:1,59:31:60:0.983:2
chr16	67697922	rs143645135	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,37:31:63:0.587:2	./.	./.	./.	./.	./.
chr16	67719382	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:31:109:0.037:2
chr16	67719489	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:31:149:0.027:2	./.	./.	./.
chr16	67761699	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:33:181:0.022:2	./.	./.	./.	./.
chr16	67765408	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:31:135:0.030:2	./.	./.
chr16	67857576	rs191744590	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,9:16:104:0.087:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	67859098	rs74684664	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,20:32:41:0.488:2	0/1:18,11:30:29:0.379:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	67902326	rs2271294	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:32:16:0.563:2	./.	./.	./.	./.	./.	./.	0/1:44,44:32:88:0.500:2	0/1:44,52:31:96:0.542:2
chr16	67911457	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:30:104:0.038:2	./.	./.	./.	./.	./.
chr16	67911517	rs8060686	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:29:6:0.500:2	./.	./.	./.	./.	./.	./.	0/1:35,31:30:66:0.470:2	0/1:40,39:29:79:0.494:2
chr16	67915749	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:33:164:0.024:2	./.	./.	./.	./.	./.
chr16	67915943	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,8:31:17:0.471:2	./.
chr16	67916898	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:33:152:0.026:2	./.
chr16	67917958	rs34607252	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,39:31:73:0.534:2	./.	./.	./.	./.	./.	./.	./.
chr16	67919693	rs142084682	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:30:87:0.046:2
chr16	67919695	rs150898109	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,64:32:95:0.674:2	./.	./.	./.	./.	./.	./.	./.
chr16	67920049	rs73594554	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:31:5:1.00:2	./.
chr16	67961437	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,32:31:63:0.508:2	./.	./.	./.	./.	./.	./.
chr16	67964203	rs1134760	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,42:29:79:0.532:2	0/1:33,40:28:73:0.548:2
chr16	67969930	rs20549	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,11:28:20:0.550:2	0/1:11,9:33:20:0.450:2
chr16	67970188	.	G	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,8:28:45:0.178:2	0/1:34,7:27:41:0.171:2	0/1:34,5:28:39:0.128:2	0/1:44,10:29:54:0.185:2	0/1:37,7:30:44:0.159:2	./.	./.	./.
chr16	67976320	rs4986970	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,41:28:75:0.547:2	0/1:27,23:30:50:0.460:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	67977904	rs121908051	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:33:79:0.051:2	./.
chr16	67977970	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,27:30:57:0.474:2	./.	./.	./.	./.	./.
chr16	67979423	rs17851876	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,41:32:92:0.446:2	./.	./.	./.	0/1:45,39:32:84:0.464:2
chr16	67980183	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,48:33:132:0.364:2	./.	./.	./.	./.	./.
chr16	67986160	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,40:33:97:0.412:2	0/1:35,24:31:59:0.407:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	67997907	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:33:85:0.047:2	./.	./.	./.
chr16	67997920	rs3785100	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,8:30:26:0.308:2	0/1:17,13:32:30:0.433:2
chr16	68014084	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:29:62:0.065:2	./.	./.	./.	./.	./.
chr16	68025801	rs255051	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,112:30:112:1.00:2	0/1:0,63:29:63:1.00:2	0/1:0,24:29:24:1.00:2	0/1:0,169:29:169:1.00:2	0/1:0,181:29:181:1.00:2	0/1:0,183:29:183:1.00:2	0/1:0,186:30:186:1.00:2	0/1:0,181:29:181:1.00:2	0/1:0,186:30:186:1.00:2	0/1:0,134:30:134:1.00:2	0/1:0,122:29:122:1.00:2
chr16	68055495	rs13816	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:31:10:0.600:2	./.	./.	./.	./.	./.	./.	0/1:18,17:31:35:0.486:2	0/1:45,30:30:75:0.400:2
chr16	68057096	rs237831	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:32:23:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,35:32:35:1.00:2	0/1:24,12:30:36:0.333:2	0/1:0,33:31:33:1.00:2	0/1:15,12:29:27:0.444:2	0/1:0,36:31:36:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,15:32:15:1.00:2
chr16	68057513	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:32:146:0.027:2
chr16	68057880	rs55682260	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	./.	./.	./.	./.	./.	0/1:5,7:31:12:0.583:2	0/1:18,10:32:28:0.357:2
chr16	68088485	rs11555011	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,23:31:42:0.548:2	./.	./.	./.	./.	./.	./.	0/1:99,97:30:196:0.495:2	0/1:96,95:30:191:0.497:2
chr16	68100461	rs2285912	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,6:33:13:0.462:2	0/1:71,49:32:120:0.408:2	./.	0/1:1,119:32:120:0.992:2	0/1:67,57:33:124:0.460:2	./.	./.	0/1:45,45:32:90:0.500:2	0/1:2,116:32:118:0.983:2
chr16	68119628	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.
chr16	68156590	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:33:85:0.047:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	68225292	rs201035978	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,40:31:105:0.381:2	./.	./.	./.	./.
chr16	68225515	rs12598	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,17:32:56:0.304:2	0/1:27,13:32:40:0.325:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	68293320	rs3743739	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.	./.	./.	./.	./.	./.	0/1:21,18:32:39:0.462:2	0/1:17,26:32:43:0.605:2
chr16	68293470	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	68321648	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.
chr16	68324384	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:32:52:0.077:2	./.	./.	./.	./.	./.
chr16	68325153	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,12:31:198:0.061:2	./.	./.	./.	./.	./.
chr16	68330584	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:33:192:0.021:2	./.	./.	./.	./.	./.
chr16	68337948	rs11548855	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,12:32:20:0.600:2	./.	./.	./.	./.	./.	./.	0/1:62,56:33:118:0.475:2	./.
chr16	68344363	rs8063446	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,4:26:13:0.308:2	0/1:9,5:26:14:0.357:2
chr16	68344696	rs3803650	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,125:30:125:1.00:2	0/1:0,62:31:62:1.00:2	0/1:9,11:29:20:0.550:2	0/1:94,80:30:174:0.460:2	0/1:2,120:30:122:0.984:2	./.	0/1:76,76:29:152:0.500:2	0/1:86,65:29:151:0.430:2	0/1:0,160:31:160:1.00:2	0/1:88,50:30:138:0.362:2	./.
chr16	68373428	rs12926948	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:15,13:32:28:0.464:2	0/1:10,12:32:22:0.545:2	./.	./.	0/1:32,36:32:68:0.529:2	./.	./.	./.	./.	./.	./.
chr16	68381516	rs7190134	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,5:31:20:0.250:2	./.	./.	./.	./.	./.	./.	0/1:94,36:32:130:0.277:2	0/1:90,54:32:144:0.375:2
chr16	68387457	rs61746794	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,18:32:52:0.360:2	0/1:40,18:32:58:0.310:2
chr16	68389772	rs1131933	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,21:32:21:1.00:2	0/1:0,6:30:6:1.00:2	./.	./.	0/1:10,17:31:27:0.630:2	./.	./.	0/1:12,12:32:24:0.500:2	0/1:0,24:33:24:1.00:2	0/1:2,9:32:11:0.818:2	./.
chr16	68395161	rs79247615	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,6:18:47:0.128:2	./.	0/1:5,3:24:8:0.375:2	0/1:41,19:18:60:0.317:2	0/1:48,16:19:64:0.250:2	0/1:37,15:17:52:0.288:2	0/1:46,14:19:60:0.233:2	0/1:46,21:18:67:0.313:2	0/1:41,12:13:53:0.226:2	0/1:23,13:22:36:0.361:2	0/1:27,6:19:33:0.182:2
chr16	68397775	rs3743743	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,10:32:30:0.333:2	0/1:20,14:33:34:0.412:2
chr16	68398924	rs1868158	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,47:31:48:0.979:2	0/1:1,33:31:34:0.971:2	0/1:2,10:31:12:0.833:2	0/1:23,20:31:43:0.465:2	0/1:0,96:31:96:1.00:2	./.	0/1:36,55:30:91:0.604:2	0/1:50,40:31:90:0.444:2	0/1:0,85:31:85:1.00:2	0/1:34,28:31:62:0.452:2	./.
chr16	68404969	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:121,4:30:125:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr16	68597330	rs138560558	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,34:31:78:0.436:2
chr16	68598007	rs1177648	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:40,51:34:91:0.560:2	0/1:11,34:33:45:0.756:2	0/1:0,15:32:15:1.00:2	./.	0/1:0,81:32:81:1.00:2	0/1:61,51:32:112:0.455:2	0/1:0,74:32:74:1.00:2	0/1:0,98:32:98:1.00:2	./.	0/1:39,34:33:73:0.466:2	0/1:54,47:33:101:0.465:2
chr16	68712730	rs8049247	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:40,25:32:65:0.385:2	0/1:22,12:31:34:0.353:2	./.	./.	0/1:32,53:31:85:0.624:2	./.	0/1:75,77:31:152:0.507:2	./.	./.	./.	./.
chr16	68713730	rs2296409	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,50:33:50:1.00:2	0/1:0,24:32:24:1.00:2	./.	./.	0/1:1,71:32:72:0.986:2	0/1:45,40:31:85:0.471:2	0/1:0,110:32:110:1.00:2	0/1:42,27:33:69:0.391:2	0/1:37,39:33:76:0.513:2	0/1:0,54:33:54:1.00:2	0/1:35,47:33:82:0.573:2
chr16	68713815	rs36038900	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,51:33:129:0.395:2	./.	./.	./.
chr16	68713823	rs2296408	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,80:32:80:1.00:2	0/1:0,48:32:48:1.00:2	./.	./.	0/1:0,112:30:112:1.00:2	0/1:51,73:31:124:0.589:2	0/1:0,173:30:173:1.00:2	0/1:74,53:32:127:0.417:2	0/1:58,45:31:103:0.437:2	0/1:1,89:31:90:0.989:2	0/1:63,49:31:112:0.438:2
chr16	68714946	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:137,4:31:141:0.028:2	./.	./.	./.	./.	./.	./.
chr16	68719183	rs35232945	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,24:31:76:0.316:2	./.
chr16	68721470	rs2296405	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:31,36:29:67:0.537:2	0/1:26,14:30:40:0.350:2	./.	./.	0/1:1,109:29:110:0.991:2	0/1:47,37:29:84:0.440:2	0/1:2,139:29:141:0.986:2	0/1:64,58:29:122:0.475:2	0/1:44,62:30:106:0.585:2	0/1:0,63:30:63:1.00:2	0/1:45,48:29:93:0.516:2
chr16	68721533	rs1126933	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,55:30:134:0.410:2	0/1:61,52:29:113:0.460:2	0/1:72,83:29:155:0.535:2	0/1:72,75:29:147:0.510:2	0/1:62,53:30:115:0.461:2	0/1:0,57:30:57:1.00:2	0/1:33,43:28:76:0.566:2
chr16	68725783	rs2274239	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:37,28:33:65:0.431:2	0/1:27,17:32:44:0.386:2	./.	./.	0/1:3,111:32:114:0.974:2	0/1:39,48:31:87:0.552:2	0/1:0,115:32:115:1.00:2	0/1:61,64:33:125:0.512:2	0/1:52,34:33:86:0.395:2	0/1:0,55:33:55:1.00:2	0/1:30,31:32:61:0.508:2
chr16	68729785	rs17715450	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,36:31:53:0.679:2	0/1:15,11:31:26:0.423:2	./.	./.	0/1:0,89:30:89:1.00:2	0/1:46,42:31:88:0.477:2	0/1:1,85:31:86:0.988:2	0/1:43,42:31:85:0.494:2	0/1:40,37:32:78:0.481:2	0/1:0,38:31:38:1.00:2	0/1:28,25:30:53:0.472:2
chr16	68771372	rs3743674	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:1,2:32:3:0.667:2	./.	0/1:0,2:33:2:1.00:2	./.	0/1:0,2:32:2:1.00:2	./.	./.	0/1:0,6:32:6:1.00:2	0/1:0,3:31:3:1.00:2	./.
chr16	68849633	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:121,4:31:125:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr16	68857441	rs1801552	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:27:20:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,6:30:6:1.00:2	0/1:22,22:28:44:0.500:2	0/1:18,20:28:38:0.526:2	0/1:21,20:27:41:0.488:2	./.	./.	0/1:0,35:30:35:1.00:2	0/1:11,18:29:29:0.621:2	0/1:24,21:29:45:0.467:2
chr16	68893953	rs4597312	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,54:29:114:0.474:2	0/1:46,47:30:93:0.505:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	68893954	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:32:138:0.029:2	./.
chr16	68953078	rs368530520	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,9:33:17:0.529:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	68953089	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:32:155:0.026:2
chr16	69143315	rs140561541	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,20:31:42:0.476:2	./.
chr16	69143577	rs2232228	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,12:26:12:1.00:2	0/1:0,14:27:14:1.00:2	./.	0/1:0,12:25:12:1.00:2	0/1:16,13:26:29:0.448:2	./.	0/1:14,12:28:26:0.462:2	0/1:6,8:26:14:0.571:2	0/1:12,16:28:28:0.571:2	0/1:6,3:30:9:0.333:2	0/1:2,3:25:5:0.600:2
chr16	69143816	rs2232229	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,31:32:67:0.463:2	./.
chr16	69170741	rs144369314	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,62:31:115:0.539:2	./.
chr16	69177268	rs2288036	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,82:31:183:0.448:2	./.	./.	./.	./.	./.
chr16	69221510	rs10650	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,6:30:8:0.750:2	./.	./.	./.
chr16	69304048	rs1136042	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,45:29:116:0.391:2	./.	./.	./.	./.
chr16	69354125	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:30:78:0.051:2	./.	./.	./.
chr16	69354682	rs17702834	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,37:30:76:0.487:2	0/1:47,45:31:92:0.489:2	./.	./.	./.	./.
chr16	69354963	rs1127231	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,66:31:67:0.985:2	0/1:64,47:32:112:0.423:2	0/1:61,64:33:125:0.512:2	0/1:41,44:33:85:0.518:2	./.	./.
chr16	69355155	rs1127232	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,23:33:39:0.590:2	0/1:29,31:32:60:0.517:2	./.	./.	./.	./.
chr16	69364030	rs3852691	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,13:30:26:0.500:2	0/1:2,5:29:7:0.714:2	./.	./.	./.	./.
chr16	69368951	rs149850861	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,58:32:127:0.457:2
chr16	69373414	rs11542583	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,38:31:38:1.00:2	0/1:32,27:31:59:0.458:2	0/1:42,35:31:77:0.455:2	0/1:25,20:32:45:0.444:2	./.	./.
chr16	69373723	rs140175616	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,11:29:35:0.314:2
chr16	69377499	rs11649369	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:33:12:0.500:2	./.	./.	./.	./.	0/1:60,49:32:109:0.450:2	0/1:65,51:32:116:0.440:2	./.	0/1:88,50:32:138:0.362:2
chr16	69381769	rs16958777	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,81:31:168:0.482:2	0/1:83,58:32:141:0.411:2	./.	./.	./.	./.
chr16	69492989	rs199524537	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,11:15:56:0.196:2	./.	./.	0/1:51,11:14:62:0.177:2	0/1:32,6:20:38:0.158:2	0/1:75,11:14:86:0.128:2
chr16	69493004	rs34661695	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,107:32:111:0.964:2	0/1:47,43:32:90:0.478:2	./.	0/1:53,30:31:83:0.361:2	./.	./.	./.	./.
chr16	69726254	rs61730074	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,59:31:146:0.404:2	./.	./.	./.	./.	./.	./.	./.
chr16	69726293	rs181766876	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,5:30:163:0.031:2
chr16	69726294	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,5:33:163:0.031:2
chr16	69728110	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,3:34:73:0.041:2	./.	./.	./.	./.	./.	./.
chr16	69745145	rs1800566	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.	0/1:24,26:30:50:0.520:2	0/1:39,12:31:51:0.235:2	./.	0/1:30,19:32:49:0.388:2	./.	./.	./.
chr16	69752373	rs689453	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:33:6:0.500:2	./.	./.	./.	0/1:40,41:32:81:0.506:2	./.	./.	./.	./.
chr16	69776377	rs1075935	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:31:15:0.600:2	./.	./.	0/1:46,43:30:89:0.483:2	./.	./.	./.	./.	./.
chr16	69782855	rs3811348	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:65,49:33:114:0.430:2	0/1:40,31:32:71:0.437:2	./.	0/1:1,172:33:173:0.994:2	0/1:104,93:32:197:0.472:2	0/1:90,85:33:175:0.486:2	0/1:94,98:32:192:0.510:2	0/1:90,102:32:192:0.531:2	0/1:2,155:33:157:0.987:2	0/1:0,154:33:154:1.00:2	0/1:0,136:33:136:1.00:2
chr16	69832637	rs146659547	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,22:31:40:0.550:2	./.	./.	./.
chr16	69963355	rs1566452	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:32:74:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,9:30:9:1.00:2	0/1:43,48:31:91:0.527:2	0/1:0,72:31:72:1.00:2	0/1:0,72:30:72:1.00:2	0/1:30,43:31:73:0.589:2	0/1:0,99:31:99:1.00:2	0/1:45,60:31:105:0.571:2	0/1:54,46:31:100:0.460:2	0/1:55,32:29:87:0.368:2
chr16	69965444	rs146199930	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,18:31:59:0.305:2	0/1:22,12:30:34:0.353:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	69965483	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:121,4:31:125:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr16	69967897	rs2270841	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,107:29:108:0.991:2	0/1:0,61:29:61:1.00:2	0/1:0,15:29:15:1.00:2	0/1:79,72:29:151:0.477:2	0/1:1,87:28:88:0.989:2	0/1:0,123:29:123:1.00:2	0/1:87,47:30:134:0.351:2	0/1:0,145:29:145:1.00:2	0/1:87,85:30:172:0.494:2	0/1:75,51:29:126:0.405:2	0/1:87,65:29:152:0.428:2
chr16	69967920	rs371834471	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:33:156:0.026:2	./.	./.
chr16	69970329	rs1983016	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:29:34:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,13:32:13:1.00:2	0/1:37,26:30:63:0.413:2	0/1:0,48:30:48:1.00:2	0/1:0,43:31:44:1.00:2	0/1:36,17:30:53:0.321:2	0/1:0,71:29:71:1.00:2	0/1:25,23:31:48:0.479:2	0/1:19,16:30:35:0.457:2	0/1:24,12:30:36:0.333:2
chr16	69971462	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:32:188:0.021:2	./.	./.	./.
chr16	69973292	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:30:65:0.062:2	./.	./.	./.
chr16	69973825	rs3748389	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:34,8:31:42:0.190:2	0/1:12,5:33:17:0.294:2	./.	./.	0/1:26,31:31:57:0.544:2	0/1:0,46:31:46:1.00:2	./.	0/1:32,41:31:73:0.562:2	./.	./.	./.
chr16	69985274	rs199537784	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,15:28:149:0.101:2	./.	./.	./.	./.	./.	./.	./.
chr16	69985339	rs201275802	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,33:31:162:0.204:2	0/1:114,26:30:140:0.186:2	./.	0/1:150,7:30:157:0.045:2	0/1:95,17:31:112:0.152:2	0/1:137,9:31:146:0.062:2	0/1:103,12:29:115:0.104:2	0/1:64,6:31:70:0.086:2
chr16	69985383	.	G	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,35:31:84:0.417:2	0/1:42,18:32:60:0.300:2	0/1:25,11:31:36:0.306:2	0/1:136,54:31:190:0.284:2	0/1:161,36:30:197:0.183:2	./.	./.	0/1:106,37:31:143:0.259:2	0/1:106,41:32:147:0.279:2	0/1:77,37:32:114:0.325:2	0/1:41,17:31:58:0.293:2
chr16	69988260	rs684036	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,16:29:53:0.308:2	0/1:21,8:28:29:0.276:2	0/1:0,9:30:9:1.00:2	0/1:46,23:30:69:0.333:2	0/1:31,13:29:44:0.295:2	./.	0/1:25,20:29:45:0.444:2	0/1:39,9:30:48:0.188:2	0/1:49,18:31:67:0.269:2	0/1:41,9:29:50:0.180:2	0/1:30,12:30:43:0.286:2
chr16	69988319	rs3869427	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:123,17:28:140:0.121:2	0/1:84,12:30:96:0.125:2	0/1:0,11:28:11:1.00:2	0/1:171,20:29:191:0.105:2	0/1:108,15:30:123:0.122:2	./.	0/1:83,43:31:126:0.341:2	0/1:153,10:30:163:0.061:2	0/1:158,9:30:167:0.054:2	0/1:153,10:26:163:0.061:2	./.
chr16	69988359	rs2549095	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:153,28:31:184:0.155:2	0/1:127,20:31:147:0.136:2	0/1:0,6:33:6:1.00:2	0/1:172,11:31:183:0.060:2	0/1:177,16:28:193:0.083:2	./.	./.	./.	0/1:182,9:28:192:0.047:2	0/1:186,7:31:193:0.036:2	0/1:165,17:28:182:0.093:2
chr16	69988373	rs2549097	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,178:30:178:1.00:2	0/1:1,159:30:160:0.994:2	0/1:0,10:32:10:1.00:2	0/1:156,26:31:183:0.143:2	0/1:2,193:30:195:0.990:2	0/1:1,178:31:180:0.994:2	0/1:0,188:30:188:1.00:2	0/1:0,185:30:185:1.00:2	0/1:159,30:31:190:0.159:2	0/1:162,25:31:189:0.134:2	0/1:161,24:29:186:0.130:2
chr16	69988383	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2	./.
chr16	69988463	rs78531533	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:144,13:34:157:0.083:2	0/1:92,13:33:105:0.124:2	0/1:21,10:34:31:0.323:2	0/1:172,12:32:184:0.065:2	0/1:173,8:34:181:0.044:2	./.	0/1:176,17:34:193:0.088:2	./.	0/1:147,25:35:172:0.145:2	0/1:171,14:33:185:0.076:2	0/1:101,10:32:111:0.090:2
chr16	69988472	rs75776403	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:57,89:31:146:0.610:2	0/1:37,49:32:86:0.570:2	./.	./.	0/1:68,104:31:172:0.605:2	0/1:2,124:31:126:0.984:2	./.	0/1:86,91:31:177:0.514:2	./.	./.	./.
chr16	69988473	rs80122082	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:137,8:31:145:0.055:2	0/1:76,11:30:87:0.126:2	0/1:20,8:32:28:0.286:2	0/1:171,12:31:183:0.066:2	0/1:169,6:29:175:0.034:2	./.	0/1:165,12:30:177:0.068:2	./.	0/1:146,20:32:166:0.120:2	0/1:171,11:32:182:0.060:2	0/1:100,9:30:109:0.083:2
chr16	69992909	rs199613056	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,32:30:81:0.395:2	0/1:45,22:30:67:0.328:2	0/1:18,9:31:27:0.333:2	0/1:99,49:31:148:0.331:2	0/1:77,52:31:129:0.403:2	./.	0/1:90,72:32:162:0.444:2	0/1:119,38:31:157:0.242:2	0/1:84,53:31:137:0.387:2	0/1:66,41:31:107:0.383:2	0/1:93,43:31:136:0.316:2
chr16	69992941	rs200745923	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,30:31:62:0.484:2	0/1:30,20:29:50:0.400:2	0/1:10,14:30:24:0.583:2	0/1:88,42:30:130:0.323:2	0/1:65,34:30:99:0.343:2	./.	0/1:68,60:31:128:0.469:2	0/1:76,33:30:109:0.303:2	0/1:57,41:31:98:0.418:2	0/1:53,34:30:87:0.391:2	0/1:73,34:30:107:0.318:2
chr16	69993682	.	T	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:122,20:31:142:0.141:2	0/1:89,10:31:99:0.101:2	./.	0/1:163,22:29:185:0.119:2	0/1:159,27:27:186:0.145:2	./.	0/1:152,24:30:176:0.136:2	./.	0/1:158,26:31:185:0.141:2	0/1:160,20:27:180:0.111:2	0/1:152,14:28:167:0.084:2
chr16	69993685	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,14:31:141:0.099:2	0/1:90,9:31:99:0.091:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	69994316	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,30:29:117:0.256:2	./.	./.	./.	./.
chr16	69994789	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,13:31:196:0.066:2	./.	./.	./.	./.
chr16	69994842	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,11:33:192:0.057:2	./.	./.	./.	./.
chr16	69995498	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,53:32:175:0.303:2	./.	./.	./.	./.	./.
chr16	69995558	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:160,34:33:194:0.175:2	./.	./.	0/1:175,21:33:196:0.107:2	./.	0/1:168,25:32:193:0.130:2	0/1:164,21:33:185:0.114:2
chr16	69995583	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:107,75:31:182:0.412:2	0/1:87,54:31:141:0.383:2	0/1:33,24:32:57:0.421:2	0/1:91,103:32:194:0.531:2	0/1:101,96:32:197:0.487:2	0/1:157,33:33:190:0.174:2	0/1:132,63:32:195:0.323:2	0/1:119,75:33:194:0.387:2	0/1:107,85:33:193:0.443:2	0/1:106,70:33:176:0.398:2	0/1:96,97:32:193:0.503:2
chr16	69996876	rs200717896	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,13:32:138:0.094:2	./.	0/1:94,8:32:102:0.078:2	./.
chr16	69996928	rs201545424	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:172,21:32:193:0.109:2	0/1:110,19:32:129:0.147:2	0/1:27,10:31:37:0.270:2	0/1:168,24:32:192:0.125:2	0/1:180,15:32:195:0.077:2	./.	0/1:178,21:32:199:0.106:2	0/1:180,15:33:195:0.077:2	0/1:164,27:32:191:0.141:2	0/1:178,18:32:196:0.092:2	0/1:181,13:32:194:0.067:2
chr16	69997447	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,33:33:194:0.170:2	./.	./.	./.	./.
chr16	69997537	rs199732245	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:52,20:32:72:0.278:2	0/1:139,30:32:169:0.178:2	0/1:148,32:31:180:0.178:2	./.	0/1:117,50:32:167:0.299:2	./.	0/1:148,38:32:186:0.204:2	0/1:150,15:32:165:0.091:2	0/1:130,41:31:171:0.240:2
chr16	70154408	rs145216652	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:33:140:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	70154480	rs200469748	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,6:31:23:0.261:2	0/1:151,35:31:186:0.188:2	0/1:147,47:29:194:0.242:2	0/1:158,37:31:195:0.190:2	0/1:126,26:30:152:0.171:2	0/1:160,38:31:199:0.192:2	./.	0/1:107,40:30:147:0.272:2	0/1:157,21:30:178:0.118:2
chr16	70154534	rs200811790	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:179,9:31:188:0.048:2	0/1:163,8:25:171:0.047:2	0/1:180,10:29:190:0.053:2	./.	0/1:166,10:31:176:0.057:2	./.	0/1:157,8:29:165:0.048:2	./.
chr16	70154542	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,62:30:172:0.360:2	./.	./.	./.	./.	./.
chr16	70161263	rs2549532	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:125,41:32:166:0.247:2	0/1:89,21:32:110:0.191:2	0/1:0,14:32:14:1.00:2	0/1:111,77:33:188:0.410:2	0/1:96,93:32:189:0.492:2	0/1:146,36:31:182:0.198:2	0/1:2,161:32:163:0.988:2	0/1:91,88:32:179:0.492:2	0/1:153,33:32:186:0.177:2	0/1:156,28:33:184:0.152:2	0/1:107,68:33:175:0.389:2
chr16	70162989	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,10:31:88:0.114:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	70164334	rs10852462	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,74:32:158:0.468:2	0/1:55,72:31:128:0.567:2	0/1:66,60:32:126:0.476:2	./.	0/1:87,68:32:155:0.439:2	./.	0/1:102,34:32:137:0.250:2	0/1:85,27:31:112:0.241:2
chr16	70170222	rs59034887	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	0/1:93,27:32:120:0.225:2	./.	0/1:122,35:32:157:0.223:2	./.	0/1:101,23:31:124:0.185:2	./.
chr16	70172890	rs142218067	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:33:13:0.462:2	./.	./.	0/1:115,35:31:150:0.233:2	./.	0/1:107,39:32:146:0.267:2	./.	./.	./.
chr16	70177553	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,22:31:154:0.143:2	./.	./.	./.	./.
chr16	70178401	rs7192962	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,9:30:70:0.129:2	./.	./.	0/1:164,33:30:197:0.168:2	./.	0/1:169,30:31:199:0.151:2	./.	./.	./.
chr16	70180088	rs200566106	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:54,40:32:94:0.426:2	0/1:28,26:33:54:0.481:2	./.	./.	0/1:128,33:32:161:0.205:2	./.	./.	0/1:112,48:31:160:0.300:2	0/1:76,48:32:124:0.387:2	./.	./.
chr16	70182375	rs62050977	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:167,20:31:188:0.107:2	0/1:84,14:31:98:0.143:2	./.	0/1:157,24:32:182:0.133:2	0/1:143,48:32:191:0.251:2	0/1:145,32:30:179:0.181:2	./.	0/1:171,17:31:188:0.090:2	./.	0/1:187,6:32:195:0.031:2	0/1:172,20:31:192:0.104:2
chr16	70182390	rs62050978	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:166,24:32:190:0.126:2	0/1:93,22:33:115:0.191:2	0/1:35,4:33:39:0.103:2	0/1:145,33:32:178:0.185:2	0/1:117,71:33:188:0.378:2	0/1:134,40:33:174:0.230:2	./.	0/1:149,42:34:191:0.220:2	./.	0/1:179,15:30:194:0.077:2	0/1:169,19:33:189:0.101:2
chr16	70190401	rs6499302	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,17:29:52:0.327:2	0/1:38,20:31:58:0.345:2	./.	0/1:62,61:31:123:0.496:2	0/1:76,83:31:159:0.522:2	0/1:113,27:32:140:0.193:2	./.	0/1:139,25:31:165:0.152:2	./.	0/1:109,27:31:136:0.199:2	0/1:57,30:31:87:0.345:2
chr16	70190570	rs141395281	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,26:31:110:0.236:2	./.	./.	./.	./.	./.
chr16	70208295	rs201003806	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:56,7:31:63:0.111:2	./.	./.	0/1:59,16:30:75:0.213:2	0/1:38,5:31:43:0.116:2	./.	./.	0/1:83,17:31:100:0.170:2	0/1:53,5:33:58:0.086:2	0/1:32,5:32:37:0.135:2	0/1:35,4:33:39:0.103:2
chr16	70211199	rs138033591	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:117,25:30:142:0.176:2	0/1:84,21:31:105:0.200:2	0/1:28,6:31:34:0.176:2	0/1:166,26:32:193:0.135:2	0/1:154,22:30:176:0.125:2	./.	0/1:100,25:32:125:0.200:2	0/1:193,6:31:199:0.030:2	0/1:118,27:31:145:0.186:2	0/1:175,20:31:195:0.103:2	0/1:84,9:32:94:0.097:2
chr16	70211215	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,22:31:198:0.111:2	./.	./.	./.	./.	./.
chr16	70211218	rs149087931	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,18:28:68:0.265:2	./.	./.	./.	./.	0/1:159,37:32:196:0.189:2	./.	0/1:154,44:31:198:0.222:2	./.
chr16	70211226	rs150357848	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:136,55:31:191:0.288:2	0/1:128,57:30:185:0.308:2	0/1:62,29:31:91:0.319:2	0/1:166,28:31:194:0.144:2	0/1:156,42:31:198:0.212:2	./.	0/1:164,30:30:194:0.155:2	0/1:194,6:32:200:0.030:2	0/1:162,34:32:196:0.173:2	0/1:172,25:31:197:0.127:2	0/1:144,27:31:171:0.158:2
chr16	70211269	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:176,17:32:193:0.088:2	0/1:164,24:32:188:0.128:2	./.	./.	0/1:186,8:33:194:0.041:2	./.	./.	./.	./.	./.	0/1:185,4:33:189:0.021:2
chr16	70211290	rs76842247	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:79,99:29:178:0.556:2	0/1:94,73:30:167:0.437:2	0/1:111,84:30:195:0.431:2	0/1:153,31:29:184:0.168:2	0/1:152,43:29:195:0.221:2	0/1:187,7:32:194:0.036:2	0/1:162,38:28:200:0.190:2	0/1:178,13:27:191:0.068:2	0/1:134,62:31:196:0.316:2	0/1:159,36:29:195:0.185:2	0/1:141,51:30:192:0.266:2
chr16	70211370	rs144090331	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:115,26:32:142:0.184:2	0/1:98,26:32:124:0.210:2	0/1:40,12:32:52:0.231:2	0/1:155,23:32:178:0.129:2	0/1:141,17:32:158:0.108:2	./.	0/1:131,17:32:148:0.115:2	./.	0/1:137,25:33:162:0.154:2	0/1:104,21:33:125:0.168:2	0/1:110,24:33:134:0.179:2
chr16	70211379	rs150702800	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,22:31:176:0.125:2	./.	./.	./.	./.	0/1:72,56:32:128:0.438:2
chr16	70211380	rs200721332	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:93,23:31:116:0.198:2	0/1:88,23:31:111:0.207:2	0/1:33,10:28:43:0.233:2	0/1:136,21:30:157:0.134:2	0/1:118,14:29:132:0.106:2	./.	0/1:99,16:29:115:0.139:2	./.	0/1:123,19:30:142:0.134:2	0/1:101,22:30:123:0.179:2	0/1:104,25:30:129:0.194:2
chr16	70215817	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,37:31:102:0.370:2	0/1:34,24:30:58:0.414:2	0/1:17,9:30:26:0.346:2	0/1:109,43:31:152:0.283:2	0/1:111,37:31:148:0.250:2	./.	0/1:78,86:31:164:0.524:2	0/1:131,20:29:151:0.132:2	0/1:103,39:32:142:0.275:2	0/1:58,57:31:115:0.496:2	0/1:93,43:31:136:0.316:2
chr16	70215849	.	A	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,31:31:76:0.408:2	0/1:26,11:30:37:0.297:2	0/1:8,14:31:22:0.636:2	0/1:96,38:31:134:0.284:2	0/1:84,35:30:119:0.294:2	./.	0/1:67,56:30:123:0.455:2	0/1:80,19:31:99:0.192:2	0/1:79,27:31:106:0.255:2	0/1:42,49:30:91:0.538:2	0/1:78,37:31:115:0.322:2
chr16	70216590	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:135,14:31:149:0.094:2	0/1:80,13:30:93:0.140:2	0/1:18,15:28:33:0.455:2	0/1:163,20:28:185:0.109:2	0/1:172,22:27:196:0.113:2	./.	0/1:165,18:30:184:0.098:2	./.	0/1:156,28:30:186:0.152:2	0/1:149,33:29:182:0.181:2	0/1:147,17:28:164:0.104:2
chr16	70216593	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,12:32:140:0.086:2	0/1:86,9:32:95:0.095:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	70216609	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,8:22:145:0.055:2
chr16	70217224	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,25:30:103:0.243:2	./.	./.	./.	./.
chr16	70217697	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,11:32:195:0.056:2	./.	./.	./.	./.
chr16	70217750	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,13:33:188:0.069:2	./.	./.	./.	./.
chr16	70218406	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,39:32:185:0.211:2	./.	./.	./.	./.	./.
chr16	70218466	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:169,21:31:191:0.111:2	./.	./.	0/1:177,18:33:195:0.092:2	./.	0/1:168,23:33:191:0.120:2	0/1:173,14:33:188:0.075:2
chr16	70218491	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,68:32:169:0.402:2	0/1:109,64:32:173:0.370:2	0/1:24,23:32:47:0.489:2	0/1:91,99:32:190:0.521:2	0/1:85,106:32:192:0.555:2	0/1:168,26:31:194:0.134:2	0/1:142,55:33:197:0.279:2	0/1:121,73:32:194:0.376:2	0/1:104,81:33:185:0.438:2	0/1:107,74:32:181:0.409:2	0/1:80,95:32:175:0.543:2
chr16	70220356	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,10:33:194:0.052:2	./.	./.	./.	./.
chr16	70220391	rs139634176	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,57:31:174:0.328:2	./.
chr16	70220446	.	G	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,6:32:21:0.286:2	0/1:155,27:32:182:0.148:2	0/1:138,18:31:156:0.115:2	./.	0/1:74,42:31:116:0.362:2	./.	0/1:135,21:32:156:0.135:2	0/1:155,7:31:162:0.043:2	0/1:121,14:31:135:0.104:2
chr16	70287177	rs4081753	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,91:32:91:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,13:31:13:1.00:2	0/1:92,76:32:168:0.452:2	0/1:0,177:32:177:1.00:2	0/1:0,144:32:144:1.00:2	0/1:2,178:32:180:0.989:2	0/1:0,183:32:183:1.00:2	0/1:0,155:33:155:1.00:2	0/1:0,107:32:107:1.00:2	0/1:73,62:32:135:0.459:2
chr16	70299456	rs150442667	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,10:31:22:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	70303580	rs2070203	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,23:32:48:0.479:2	0/1:13,22:33:35:0.629:2	0/1:0,10:31:10:1.00:2	0/1:40,39:32:80:0.494:2	0/1:74,83:31:157:0.529:2	0/1:42,37:31:80:0.468:2	0/1:59,71:32:130:0.546:2	./.	0/1:47,33:32:80:0.413:2	0/1:24,29:31:53:0.547:2	0/1:20,32:32:52:0.615:2
chr16	70365723	rs147229851	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,64:29:149:0.430:2	./.	./.	./.	./.	./.
chr16	70367494	.	A	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:72,7:19:79:0.089:2	./.	./.	0/1:109,17:14:126:0.135:2	./.	./.	./.	0/1:101,19:11:120:0.158:2	./.	./.	0/1:82,24:15:108:0.226:2
chr16	70395369	rs1055783	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,22:33:42:0.524:2	./.	./.
chr16	70395387	rs1134074	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,13:32:24:0.542:2	0/1:7,4:32:11:0.364:2	0/1:0,7:32:7:1.00:2	0/1:16,25:31:41:0.610:2	0/1:18,22:31:40:0.550:2	./.	0/1:28,12:32:40:0.300:2	./.	0/1:21,19:32:40:0.475:2	0/1:12,11:32:23:0.478:2	0/1:26,11:32:37:0.297:2
chr16	70400040	rs199645926	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,5:35:199:0.025:2	./.	./.
chr16	70404141	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,31:33:62:0.500:2	./.
chr16	70404212	rs3199021	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,45:31:189:0.238:2	./.	./.	./.	./.	./.
chr16	70404224	rs189321243	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,5:29:157:0.032:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	70405817	rs139997947	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,52:32:148:0.351:2
chr16	70405898	.	A	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:73,10:20:83:0.120:2	./.	./.	0/1:78,22:12:101:0.220:2	./.	0/1:106,20:12:127:0.159:2	./.	0/1:105,15:13:120:0.125:2	./.	0/1:89,9:18:98:0.092:2	0/1:85,16:12:101:0.158:2
chr16	70432236	rs62638718	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,24:31:39:0.615:2	./.	./.	./.	./.
chr16	70504885	rs17881219	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,25:31:55:0.455:2	./.	./.	./.	./.
chr16	70506907	rs7192865	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,8:29:27:0.296:2	0/1:9,9:30:18:0.500:2	0/1:0,3:29:3:1.00:2	0/1:1,36:29:37:0.973:2	0/1:36,18:27:54:0.333:2	./.	0/1:1,31:30:32:0.969:2	./.	0/1:24,13:30:37:0.351:2	0/1:0,58:29:58:1.00:2	0/1:30,29:29:59:0.492:2
chr16	70512191	rs8049046	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,33:29:66:0.500:2	./.	./.	./.	./.
chr16	70513152	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:33:95:0.042:2
chr16	70513576	rs180673806	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,38:29:78:0.487:2	./.	./.	./.	./.
chr16	70515355	rs11054	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,13:31:28:0.464:2	0/1:12,7:31:19:0.368:2	0/1:1,10:31:11:0.909:2	0/1:0,39:31:39:1.00:2	0/1:19,18:32:37:0.486:2	./.	0/1:29,32:30:62:0.525:2	./.	0/1:36,20:32:56:0.357:2	0/1:17,18:30:35:0.514:2	0/1:14,20:31:34:0.588:2
chr16	70542365	rs183569708	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,32:32:65:0.492:2	./.	./.	./.	./.
chr16	70543911	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:33:52:0.077:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	70546234	rs3762171	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:79,48:31:127:0.378:2	0/1:50,29:32:79:0.367:2	./.	./.	0/1:79,46:31:125:0.368:2	0/1:97,75:31:172:0.436:2	./.	0/1:5,128:31:133:0.962:2	0/1:82,65:32:147:0.442:2	./.	0/1:79,74:32:153:0.484:2
chr16	70548297	rs3931036	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:32:71:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,108:31:108:1.00:2	0/1:0,90:31:90:1.00:2	0/1:0,127:32:127:1.00:2	0/1:0,120:32:120:1.00:2	0/1:0,115:32:115:1.00:2	0/1:0,101:31:101:1.00:2	0/1:0,72:32:72:1.00:2
chr16	70563087	rs76371422	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:37,6:19:43:0.140:2	./.	./.	0/1:58,18:13:76:0.237:2	0/1:55,13:14:69:0.191:2	0/1:71,12:15:83:0.145:2	0/1:46,12:13:58:0.207:2	0/1:52,22:13:74:0.297:2	0/1:53,7:20:60:0.117:2	0/1:41,14:19:55:0.255:2	0/1:51,11:18:62:0.177:2
chr16	70569215	rs33910368	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:36,37:32:73:0.507:2	0/1:23,17:32:40:0.425:2	./.	./.	0/1:52,34:32:86:0.395:2	0/1:48,51:32:99:0.515:2	./.	0/1:3,91:32:94:0.968:2	0/1:55,43:33:98:0.439:2	./.	0/1:90,52:33:142:0.366:2
chr16	70588398	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,5:28:176:0.028:2	./.	./.
chr16	70590201	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:34:98:0.041:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	70590898	rs116924445	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,62:31:118:0.525:2
chr16	70602221	rs12909	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:81,52:33:133:0.391:2	0/1:54,45:32:99:0.455:2	./.	./.	0/1:76,48:32:124:0.387:2	0/1:106,87:31:193:0.451:2	0/1:76,74:32:150:0.493:2	0/1:0,171:31:171:1.00:2	0/1:116,78:33:194:0.402:2	./.	0/1:110,83:32:193:0.430:2
chr16	70680850	rs3813905	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,20:27:45:0.444:2	0/1:38,16:30:54:0.296:2	0/1:12,25:30:37:0.676:2	./.	0/1:26,15:28:41:0.366:2	0/1:28,7:28:35:0.200:2
chr16	70690916	rs77769000	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,68:31:153:0.444:2	./.	./.	./.	./.
chr16	70690989	rs8046424	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,34:32:69:0.493:2	0/1:29,24:32:53:0.453:2	./.	./.	./.	0/1:1,98:32:99:0.990:2	0/1:91,61:32:152:0.401:2	0/1:0,156:32:156:1.00:2	0/1:57,40:32:97:0.412:2	0/1:55,37:33:92:0.402:2	0/1:47,54:31:101:0.535:2
chr16	70693580	rs138898622	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,49:30:107:0.458:2	./.	./.	./.	./.
chr16	70694000	rs4985556	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,36:29:59:0.610:2	./.
chr16	70698177	rs146594262	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:27:4:1.00:2
chr16	70708398	rs147002775	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	70710858	rs59984573	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:32:12:0.500:2	./.	0/1:33,34:32:67:0.507:2	./.	./.	./.	./.	./.	./.
chr16	70713204	rs185659164	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,34:31:95:0.358:2
chr16	70726795	rs2278983	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,46:32:87:0.535:2	0/1:38,33:32:71:0.465:2	0/1:13,14:32:27:0.519:2	0/1:1,163:31:164:0.994:2	0/1:88,100:31:188:0.532:2	./.	0/1:9,171:32:180:0.950:2	./.	0/1:54,62:33:116:0.534:2	./.	0/1:41,37:32:78:0.474:2
chr16	70729448	rs61756217	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,53:29:110:0.482:2
chr16	70796515	rs2305689	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,127:32:128:0.992:2	0/1:100,69:32:169:0.408:2	0/1:77,51:32:128:0.398:2	0/1:0,190:32:190:1.00:2	0/1:89,70:31:159:0.440:2	0/1:0,118:33:118:1.00:2	0/1:70,51:31:121:0.421:2	0/1:1,104:32:105:0.990:2
chr16	70818759	rs2271047	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,37:30:89:0.416:2	./.	0/1:50,38:29:88:0.432:2	0/1:2,77:30:79:0.975:2	0/1:67,59:30:126:0.468:2	0/1:38,24:32:62:0.387:2	./.	./.
chr16	70841811	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,77:30:143:0.542:2	./.	./.	./.	./.	./.
chr16	70863593	rs199711169	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:157,14:31:171:0.082:2	./.	./.	./.	0/1:157,14:33:171:0.082:2	./.	./.
chr16	70863608	rs199844111	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,21:31:144:0.146:2
chr16	70871601	rs114164853	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,9:29:194:0.046:2	./.
chr16	70883694	rs201731118	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,16:29:95:0.168:2	./.	./.	./.	./.	./.	0/1:57,12:32:69:0.174:2	./.
chr16	70884524	rs75694658	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:33:92:0.043:2	./.	./.	./.	./.
chr16	70894024	rs147399921	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:132,26:32:158:0.165:2	./.	./.	./.	./.	./.	./.	./.
chr16	70894087	rs149857179	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:87,5:33:92:0.054:2	0/1:50,6:33:56:0.107:2	./.	0/1:100,9:33:109:0.083:2	0/1:72,5:32:77:0.065:2	0/1:87,9:31:96:0.094:2	0/1:77,12:34:89:0.135:2	0/1:81,12:32:93:0.129:2	0/1:101,15:34:116:0.129:2	0/1:72,12:33:84:0.143:2	0/1:111,8:31:119:0.067:2
chr16	70894771	rs201027521	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,12:33:40:0.300:2	./.
chr16	70896118	rs138156211	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.	./.	./.	./.	0/1:99,4:34:103:0.039:2
chr16	70896122	rs74553490	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.	./.	./.	./.	0/1:96,4:34:100:0.040:2
chr16	70900080	rs374073980	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,52:29:141:0.369:2
chr16	70900199	rs200845003	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,20:30:118:0.169:2
chr16	70902541	rs74692831	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:33:145:0.028:2	./.
chr16	70908728	rs200877304	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,37:29:87:0.425:2
chr16	70913651	rs116891635	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,15:32:46:0.326:2	0/1:23,14:33:37:0.378:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	70917931	rs142251979	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,31:31:83:0.373:2
chr16	70934974	rs12102425	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,40:32:147:0.272:2	./.
chr16	70937926	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:32:166:0.024:2	./.	./.	./.
chr16	70954915	rs1798531	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,37:33:37:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,47:32:47:1.00:2
chr16	70955079	rs199829030	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,10:32:60:0.167:2	./.
chr16	70972595	rs79004160	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,39:33:74:0.527:2	0/1:18,13:30:31:0.419:2	0/1:8,3:30:11:0.273:2	0/1:8,70:32:78:0.897:2	0/1:48,40:33:88:0.455:2	0/1:45,47:32:92:0.511:2	0/1:5,89:32:94:0.947:2	0/1:6,101:32:107:0.944:2	0/1:52,38:33:90:0.422:2	0/1:47,28:33:75:0.373:2	0/1:8,65:32:73:0.890:2
chr16	70975667	rs117379722	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:21,4:26:25:0.160:2	./.	./.	./.	0/1:37,11:27:48:0.229:2	./.	0/1:63,9:27:72:0.125:2	0/1:45,6:28:51:0.118:2	0/1:43,7:27:50:0.140:2	./.
chr16	70993566	rs148317594	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:28:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	70993639	rs200979879	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,18:27:47:0.383:2	0/1:27,10:31:37:0.270:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	70998673	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:33:124:0.032:2	./.
chr16	71009054	rs201855097	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,26:30:120:0.217:2	./.	./.	./.
chr16	71012855	rs149870093	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:177,14:27:191:0.073:2	0/1:92,12:29:104:0.115:2	./.	0/1:178,14:28:192:0.073:2	0/1:167,14:26:181:0.077:2	0/1:172,14:27:186:0.075:2	0/1:171,24:28:195:0.123:2	0/1:160,31:28:191:0.162:2	0/1:163,26:30:189:0.138:2	0/1:166,20:28:186:0.108:2	0/1:156,29:28:185:0.157:2
chr16	71015329	rs112779887	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:52,33:31:86:0.388:2	0/1:30,14:30:44:0.318:2	0/1:3,6:31:9:0.667:2	./.	0/1:13,74:31:87:0.851:2	./.	./.	./.	0/1:71,51:32:122:0.418:2	0/1:35,46:31:81:0.568:2	./.
chr16	71021977	rs138771909	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,27:33:123:0.220:2	0/1:61,15:32:76:0.197:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	71022326	rs201619474	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,16:31:80:0.200:2	./.	0/1:62,22:33:84:0.262:2	./.	./.
chr16	71025245	rs116894611	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:119,4:33:123:0.033:2	0/1:46,4:33:50:0.080:2	./.	0/1:146,8:29:154:0.052:2	0/1:99,6:31:105:0.057:2	./.	0/1:129,7:32:136:0.051:2	0/1:159,8:32:167:0.048:2	0/1:159,14:32:173:0.081:2	0/1:112,12:33:124:0.097:2	0/1:141,8:32:149:0.054:2
chr16	71054181	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:31:53:0.075:2	./.	./.	./.	./.	./.
chr16	71061688	rs201790967	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,12:31:47:0.255:2
chr16	71065705	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,19:31:88:0.216:2	./.	./.	./.	./.	./.	./.
chr16	71094434	rs151201628	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:101,18:30:119:0.151:2	./.	0/1:96,31:30:127:0.244:2	./.	./.	./.	0/1:96,37:31:133:0.278:2
chr16	71163579	rs78804306	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:68,15:30:83:0.181:2	0/1:32,4:31:36:0.111:2	./.	0/1:59,27:30:86:0.314:2	0/1:41,6:30:47:0.128:2	0/1:72,11:30:83:0.133:2	./.	0/1:62,9:31:71:0.127:2	./.	0/1:43,8:31:51:0.157:2	./.
chr16	71163693	rs150028416	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,27:30:105:0.257:2	0/1:50,14:30:64:0.219:2	./.	./.	./.	0/1:100,55:30:155:0.355:2	0/1:55,21:31:76:0.276:2	./.	0/1:89,37:31:126:0.294:2	./.	0/1:64,45:30:109:0.413:2
chr16	71196592	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,7:20:126:0.056:2
chr16	71318001	rs3096381	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:18,14:31:32:0.438:2	0/1:17,13:32:30:0.433:2	./.	./.	0/1:11,16:31:27:0.593:2	./.	./.	0/1:21,14:31:35:0.400:2	./.	./.	0/1:30,18:31:48:0.375:2
chr16	71318577	rs3803704	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:32,32:32:64:0.500:2	0/1:21,19:32:40:0.475:2	0/1:1,7:32:8:0.875:2	./.	./.	0/1:20,26:31:46:0.565:2	0/1:19,20:32:39:0.513:2	./.	./.	./.	0/1:36,34:32:70:0.486:2
chr16	71319539	rs3826247	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,32:33:56:0.571:2	0/1:34,10:33:44:0.227:2	0/1:0,8:33:8:1.00:2	0/1:1,70:33:71:0.986:2	0/1:26,30:32:56:0.536:2	0/1:1,41:32:42:0.976:2	0/1:1,50:32:51:0.980:2	0/1:30,29:32:59:0.492:2	0/1:45,40:33:85:0.471:2	0/1:0,63:33:63:1.00:2	0/1:39,57:33:96:0.594:2
chr16	71319646	rs3096380	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:31:74:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,5:31:5:1.00:2	0/1:2,60:31:62:0.968:2	0/1:0,47:30:47:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,49:32:50:1.00:2	0/1:0,99:32:99:1.00:2
chr16	71411636	rs11545954	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,30:30:93:0.323:2	./.	./.	0/1:42,43:31:85:0.506:2	./.	./.	0/1:47,44:31:91:0.484:2
chr16	71418291	rs41280904	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,36:28:85:0.424:2	0/1:40,37:29:77:0.481:2	./.	0/1:64,48:30:112:0.429:2	0/1:45,26:30:71:0.366:2	./.
chr16	71482169	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:31:160:0.025:2	./.	./.	./.
chr16	71482672	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:32:82:0.049:2	./.
chr16	71483497	rs72795864	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,12:32:39:0.308:2	./.	./.	./.	./.	./.	./.
chr16	71487206	rs2070832	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,15:32:38:0.395:2	0/1:13,7:30:20:0.350:2	./.	0/1:28,31:33:59:0.525:2	0/1:0,33:32:33:1.00:2	0/1:14,18:33:32:0.563:2	0/1:0,48:33:48:1.00:2	0/1:19,10:32:29:0.345:2	0/1:23,25:33:48:0.521:2	0/1:15,11:33:26:0.423:2	0/1:0,40:33:40:1.00:2
chr16	71487948	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,3:34:34:0.088:2	./.	./.
chr16	71487952	rs11641967	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,20:31:48:0.417:2	0/1:16,11:31:27:0.407:2	./.	0/1:16,19:33:35:0.543:2	0/1:21,18:31:39:0.462:2	./.
chr16	71509588	rs2288487	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,23:33:51:0.451:2	0/1:16,6:34:22:0.273:2	./.	0/1:22,7:32:29:0.241:2	0/1:8,8:31:16:0.500:2	0/1:13,10:32:23:0.435:2	0/1:1,23:31:24:0.958:2	./.	0/1:23,17:33:40:0.425:2	0/1:14,15:31:29:0.517:2	0/1:32,21:33:53:0.396:2
chr16	71509634	rs2288488	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,13:30:37:0.351:2	0/1:20,10:30:30:0.333:2	./.	0/1:19,9:30:28:0.321:2	0/1:11,11:30:22:0.500:2	0/1:17,14:30:31:0.452:2	0/1:0,24:29:24:1.00:2	./.	0/1:28,18:31:46:0.391:2	0/1:19,13:30:32:0.406:2	0/1:19,18:30:37:0.486:2
chr16	71509685	rs2288489	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,22:32:51:0.431:2	0/1:20,11:33:31:0.355:2	0/1:0,2:34:2:1.00:2	0/1:31,15:32:46:0.326:2	0/1:0,28:32:28:1.00:2	0/1:29,26:32:55:0.473:2	0/1:0,36:32:36:1.00:2	0/1:0,51:33:51:1.00:2	0/1:0,65:34:65:1.00:2	0/1:24,13:33:37:0.351:2	0/1:1,44:32:45:0.978:2
chr16	71509739	rs145400322	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,16:32:41:0.390:2	./.	./.	./.	./.	./.	./.	./.
chr16	71509796	rs8050871	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,9:32:31:0.290:2	0/1:16,14:32:30:0.467:2	./.	0/1:26,16:33:42:0.381:2	0/1:14,24:31:38:0.632:2	0/1:39,18:32:57:0.316:2	0/1:0,31:31:31:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,39:33:39:1.00:2	0/1:27,19:32:46:0.413:2	0/1:0,40:32:40:1.00:2
chr16	71570847	rs148657245	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,57:30:118:0.483:2
chr16	71604207	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:35:58:0.069:2	./.	./.	./.	./.
chr16	71609856	rs78302875	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,46:33:92:0.500:2	./.	./.	0/1:50,44:33:94:0.468:2
chr16	71610258	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,5:33:176:0.028:2	./.	./.
chr16	71610276	rs74344827	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,67:31:130:0.515:2	./.	0/1:81,90:32:171:0.526:2	./.	0/1:93,76:33:169:0.450:2	0/1:85,63:32:148:0.426:2	./.
chr16	71660310	rs4788821	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,10:30:21:0.476:2	0/1:4,6:33:10:0.600:2	0/1:0,2:31:2:1.00:2	0/1:18,14:29:32:0.438:2	./.	0/1:17,10:32:27:0.370:2	./.	0/1:18,19:29:37:0.514:2	./.	0/1:7,12:26:19:0.632:2	./.
chr16	71660404	rs61753635	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,4:32:9:0.444:2	0/1:2,3:33:5:0.600:2	./.
chr16	71668634	rs12932850	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,22:29:48:0.458:2	0/1:22,13:30:35:0.371:2	0/1:0,3:22:3:1.00:2	0/1:34,24:29:58:0.414:2	./.	0/1:25,21:30:46:0.457:2	./.	0/1:30,19:29:49:0.388:2	./.	0/1:25,15:29:40:0.375:2	./.
chr16	71674882	rs2303225	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,55:30:119:0.462:2	0/1:40,39:30:79:0.494:2	0/1:0,16:30:16:1.00:2	0/1:86,68:30:154:0.442:2	./.	0/1:111,62:30:173:0.358:2	./.	0/1:73,79:30:152:0.520:2	./.	0/1:81,60:30:141:0.426:2	./.
chr16	71682796	rs61733125	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:41,27:31:68:0.397:2	0/1:27,20:32:47:0.426:2	./.	0/1:34,39:33:73:0.534:2	0/1:36,33:32:69:0.478:2	0/1:38,39:32:77:0.506:2	0/1:38,20:32:58:0.345:2	0/1:49,36:32:85:0.424:2	./.	./.	0/1:0,69:31:69:1.00:2
chr16	71682817	rs144133911	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:31:13:0.462:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	71682830	rs61733124	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,62:32:150:0.413:2	./.	./.	0/1:49,46:32:95:0.484:2
chr16	71683623	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,11:17:165:0.067:2
chr16	71683718	rs61733127	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:85,55:33:140:0.393:2	./.	0/1:92,79:33:171:0.462:2	./.	0/1:80,77:33:157:0.490:2	0/1:66,67:34:133:0.504:2	0/1:82,68:32:150:0.453:2
chr16	71710428	rs61733123	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:48,54:32:102:0.529:2	0/1:25,26:32:51:0.510:2	./.	./.	0/1:79,74:31:153:0.484:2	./.	0/1:76,39:31:115:0.339:2	./.	./.	./.	./.
chr16	71712786	rs61733126	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,31:33:57:0.544:2	0/1:16,19:33:35:0.543:2	./.	0/1:34,18:32:52:0.346:2	0/1:20,9:31:29:0.310:2	0/1:16,18:32:34:0.529:2	0/1:18,18:33:36:0.500:2	./.	./.	./.	./.
chr16	71713297	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:33:58:0.069:2	./.	./.
chr16	71736557	rs368024614	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,3:33:47:0.064:2	./.	./.
chr16	71748638	rs370675560	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,76:33:162:0.469:2	./.
chr16	71773190	rs904763	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:41,41:31:83:0.500:2	0/1:24,18:32:42:0.429:2	./.	0/1:52,55:31:108:0.514:2	0/1:38,54:31:92:0.587:2	0/1:53,59:31:112:0.527:2	0/1:66,87:31:153:0.569:2	0/1:72,75:31:147:0.510:2	./.	./.	0/1:72,47:32:119:0.395:2
chr16	71800384	rs12930206	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,9:30:36:0.250:2	0/1:9,15:32:24:0.625:2	0/1:0,3:32:3:1.00:2	0/1:18,14:31:32:0.438:2	./.	0/1:17,15:31:32:0.469:2	./.	0/1:12,13:32:25:0.520:2	./.	0/1:20,8:32:28:0.286:2	./.
chr16	71807232	rs113235758	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,10:31:29:0.345:2	./.	0/1:34,27:31:61:0.443:2	0/1:19,15:31:34:0.441:2	./.
chr16	71884142	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,5:32:118:0.042:2	./.	./.	./.	./.	./.
chr16	71885423	rs61747555	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:28:8:0.625:2	./.	./.	./.	./.	0/1:27,36:29:63:0.571:2	./.	./.	./.
chr16	71886530	rs7184486	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,20:31:20:1.00:2	0/1:1,14:31:15:0.933:2	./.	0/1:0,28:31:28:1.00:2	0/1:0,12:30:12:1.00:2	0/1:4,16:31:20:0.800:2	0/1:0,22:31:22:1.00:2	./.	0/1:0,8:32:8:1.00:2	0/1:0,17:31:17:1.00:2	0/1:9,5:32:14:0.357:2
chr16	71886976	rs146429807	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,46:32:94:0.489:2	./.	./.	./.	./.	./.	./.
chr16	71887381	rs16973477	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,29:29:63:0.460:2	0/1:25,20:28:45:0.444:2	./.	0/1:55,42:30:97:0.433:2	0/1:28,26:29:54:0.481:2	./.	0/1:39,30:27:69:0.435:2	./.	./.	./.	0/1:45,24:29:69:0.348:2
chr16	71887756	rs118191970	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,69:32:173:0.399:2	./.	./.
chr16	71889173	rs6499545	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,143:32:143:1.00:2	0/1:1,92:32:93:0.989:2	0/1:0,18:31:18:1.00:2	0/1:0,170:32:170:1.00:2	0/1:2,109:31:111:0.982:2	0/1:84,63:30:147:0.429:2	0/1:0,93:31:93:1.00:2	0/1:68,69:31:137:0.504:2	0/1:0,189:32:189:1.00:2	0/1:0,112:32:112:1.00:2	0/1:88,93:31:181:0.514:2
chr16	71890489	rs2291947	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,75:33:159:0.475:2	0/1:50,44:32:94:0.468:2	0/1:1,30:31:31:0.968:2	0/1:91,76:33:167:0.455:2	./.	0/1:86,71:32:157:0.452:2	./.	0/1:82,76:33:158:0.481:2	./.	0/1:0,155:33:156:1.00:2	./.
chr16	71890550	rs3088285	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,36:30:73:0.493:2	./.	0/1:61,28:31:89:0.315:2	./.	0/1:0,70:32:70:1.00:2	./.	./.
chr16	71950450	rs1049794	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:58,45:31:103:0.437:2	0/1:28,39:31:67:0.582:2	./.	0/1:77,64:30:141:0.454:2	0/1:95,59:30:154:0.383:2	./.	0/1:73,56:30:129:0.434:2	./.	./.	./.	0/1:66,65:31:131:0.496:2
chr16	71950507	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:33:133:0.030:2	./.	./.
chr16	71956517	.	C	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,6:33:86:0.070:2	0/1:80,9:34:89:0.101:2	./.	0/1:71,5:33:76:0.066:2	./.	./.	./.	0/1:56,4:34:60:0.067:2
chr16	71956535	rs62639219	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,7:34:42:0.167:2	./.
chr16	71958687	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:32:124:0.032:2	./.	./.	./.	./.	./.
chr16	71967886	rs147505098	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,48:32:89:0.539:2	0/1:23,20:31:43:0.465:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	71967927	rs17358402	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,35:31:99:0.354:2	./.	0/1:63,60:32:123:0.488:2	./.	0/1:1,84:33:85:0.988:2	./.	./.
chr16	71969261	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:33:128:0.031:2	./.
chr16	71983772	rs1035543	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,36:32:99:0.364:2	0/1:34,28:32:62:0.452:2	0/1:1,10:32:11:0.909:2	0/1:36,60:32:96:0.625:2	./.	0/1:53,40:32:93:0.430:2	./.	0/1:59,37:31:96:0.385:2	./.	0/1:0,90:31:90:1.00:2	./.
chr16	71986946	rs7204708	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,99:32:99:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,165:32:165:1.00:2	0/1:84,55:31:139:0.396:2	0/1:0,170:32:170:1.00:2	0/1:90,76:32:167:0.458:2	0/1:1,170:33:171:0.994:2	0/1:0,112:32:112:1.00:2	0/1:59,47:33:106:0.443:2
chr16	71988106	rs9921412	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,124:32:124:1.00:2	0/1:0,81:31:81:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,177:32:177:1.00:2	0/1:0,146:31:146:1.00:2	0/1:82,74:30:156:0.474:2	0/1:0,149:32:149:1.00:2	0/1:97,78:31:175:0.446:2	0/1:1,166:32:167:0.994:2	0/1:0,128:31:128:1.00:2	0/1:72,88:31:160:0.550:2
chr16	72001110	rs9928413	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,37:30:39:0.949:2	0/1:4,27:31:31:0.871:2	0/1:1,4:31:5:0.800:2	0/1:0,58:30:58:1.00:2	0/1:37,17:30:54:0.315:2	0/1:35,23:29:58:0.397:2	0/1:48,19:30:67:0.284:2	./.	./.	0/1:2,33:30:35:0.943:2	0/1:38,27:29:65:0.415:2
chr16	72001136	rs4788587	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,31:32:65:0.477:2	./.	./.	./.
chr16	72003890	rs141635878	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,6:32:130:0.046:2	./.	./.	./.	./.
chr16	72003952	rs35259348	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:33:75:1.00:2	0/1:3,49:33:52:0.942:2	0/1:14,3:32:17:0.176:2	0/1:1,94:33:95:0.989:2	0/1:88,36:33:124:0.290:2	0/1:48,46:33:94:0.489:2	0/1:79,50:33:129:0.388:2	./.	./.	0/1:2,61:33:63:0.968:2	0/1:56,44:33:100:0.440:2
chr16	72007232	rs7197967	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,38:31:79:0.481:2	./.	0/1:46,35:32:81:0.432:2	./.	./.	0/1:20,29:32:49:0.592:2
chr16	72007399	rs9925415	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	0/1:38,35:31:73:0.479:2	./.	0/1:43,33:32:76:0.434:2	0/1:45,47:32:92:0.511:2	0/1:0,78:32:78:1.00:2	./.	./.
chr16	72011181	rs1559401	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,85:32:86:0.988:2	0/1:0,45:32:45:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,73:31:73:1.00:2	0/1:0,64:31:64:1.00:2	0/1:59,39:30:98:0.398:2	0/1:0,68:30:68:1.00:2	0/1:71,30:31:101:0.297:2	0/1:0,94:32:94:1.00:2	0/1:0,78:31:78:1.00:2	0/1:53,29:32:82:0.354:2
chr16	72011193	rs1559400	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,69:31:70:0.986:2	0/1:0,46:31:46:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,75:30:75:1.00:2	0/1:1,71:30:72:0.986:2	0/1:61,39:29:100:0.390:2	0/1:0,65:30:65:1.00:2	0/1:65,31:31:96:0.323:2	0/1:0,93:31:93:1.00:2	0/1:0,75:31:75:1.00:2	0/1:50,28:31:78:0.359:2
chr16	72011261	rs1559399	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,137:33:139:0.986:2	0/1:0,67:33:67:1.00:2	0/1:0,14:32:14:1.00:2	./.	0/1:0,183:32:183:1.00:2	0/1:100,86:32:186:0.462:2	0/1:2,191:33:193:0.990:2	0/1:110,80:33:190:0.421:2	0/1:0,140:33:140:1.00:2	0/1:0,130:33:130:1.00:2	0/1:107,63:34:170:0.371:2
chr16	72013797	rs7185272	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:32:37:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,4:31:4:1.00:2	0/1:1,46:32:47:0.979:2	0/1:0,27:33:27:1.00:2	0/1:18,20:32:38:0.526:2	0/1:0,28:32:28:1.00:2	0/1:21,22:32:43:0.512:2	0/1:0,41:33:41:1.00:2	0/1:0,33:33:33:1.00:2	0/1:32,39:33:71:0.549:2
chr16	72020134	rs12708923	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,27:32:29:0.931:2	./.	0/1:104,94:32:198:0.475:2	./.	0/1:107,92:32:199:0.462:2	0/1:125,70:32:195:0.359:2	0/1:1,194:33:195:0.995:2	./.	./.
chr16	72020294	rs4788590	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,129:33:131:0.985:2	0/1:2,98:33:100:0.980:2	0/1:0,30:32:30:1.00:2	0/1:0,157:32:157:1.00:2	0/1:1,146:32:147:0.993:2	0/1:86,72:32:158:0.456:2	0/1:0,154:32:154:1.00:2	0/1:91,71:32:162:0.438:2	0/1:0,157:33:157:1.00:2	0/1:0,153:32:153:1.00:2	0/1:95,88:32:183:0.481:2
chr16	72020323	rs4788591	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,111:32:113:0.982:2	0/1:1,84:31:85:0.988:2	0/1:0,26:31:26:1.00:2	0/1:0,146:32:146:1.00:2	0/1:0,134:31:134:1.00:2	0/1:92,68:31:160:0.425:2	0/1:0,128:31:128:1.00:2	0/1:101,72:31:173:0.416:2	0/1:0,142:32:142:1.00:2	0/1:0,117:32:117:1.00:2	0/1:89,89:31:178:0.500:2
chr16	72027183	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:31:90:0.044:2	./.	./.	./.	./.	./.
chr16	72027191	rs7191148	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,8:31:16:0.500:2	./.	0/1:34,24:30:58:0.414:2	./.	0/1:34,17:30:51:0.333:2	./.	0/1:56,31:31:87:0.356:2	./.	./.
chr16	72032231	rs16973585	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:32,22:33:54:0.407:2	0/1:19,7:32:26:0.269:2	./.	./.	./.	./.	./.	0/1:0,74:32:74:1.00:2	./.	0/1:29,33:32:62:0.532:2	0/1:47,17:32:64:0.266:2
chr16	72033801	rs72787027	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,8:31:20:0.400:2	./.	0/1:81,58:31:139:0.417:2	./.	0/1:76,59:32:135:0.437:2	./.	0/1:2,155:33:157:0.987:2	./.	./.
chr16	72042635	rs34270657	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,43:32:91:0.473:2	0/1:23,17:30:40:0.425:2	./.	./.	./.	0/1:82,77:32:159:0.484:2	./.	./.	./.	0/1:34,61:31:95:0.642:2	./.
chr16	72042682	rs3213422	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:54,58:32:112:0.518:2	0/1:21,26:33:47:0.553:2	0/1:5,9:31:14:0.643:2	./.	0/1:88,87:33:176:0.497:2	./.	0/1:92,92:33:184:0.500:2	0/1:3,172:32:175:0.983:2	0/1:0,118:33:118:1.00:2	0/1:83,52:33:135:0.385:2	0/1:59,38:33:97:0.392:2
chr16	72090452	rs201773535	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:149,46:31:195:0.236:2	./.	./.	./.	./.	./.	./.	./.
chr16	72092176	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:157,40:32:197:0.203:2	./.	./.	./.	./.	./.	./.	./.
chr16	72093029	rs1140430	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,6:32:193:0.031:2	./.	./.	./.	./.
chr16	72093030	rs199926732	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2	./.	./.	./.	./.
chr16	72094348	rs5475	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,43:31:105:0.410:2	./.
chr16	72094664	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,98:31:193:0.508:2	./.	./.
chr16	72094691	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,10:33:195:0.051:2	0/1:184,9:31:193:0.047:2	./.	0/1:187,9:33:196:0.046:2	./.	./.	./.	./.
chr16	72107865	rs11642506	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,82:32:175:0.469:2	./.	0/1:99,70:32:169:0.414:2	./.	0/1:95,73:32:168:0.435:2	./.	./.
chr16	72110906	rs370432256	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:34:193:0.021:2	./.	./.
chr16	72110948	rs12646	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,49:32:120:0.408:2	0/1:38,26:32:64:0.406:2	0/1:16,5:32:21:0.238:2	0/1:79,47:32:126:0.373:2	0/1:81,43:32:124:0.347:2	0/1:91,55:31:146:0.377:2	0/1:91,50:33:141:0.355:2	./.	./.	0/1:57,50:33:108:0.467:2	0/1:91,38:32:129:0.295:2
chr16	72130203	rs1050361	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,53:33:103:0.515:2	0/1:25,26:32:51:0.510:2	0/1:8,7:32:15:0.467:2	0/1:55,85:32:140:0.607:2	0/1:59,46:32:105:0.438:2	0/1:77,81:31:159:0.513:2	0/1:85,69:32:154:0.448:2	./.	./.	0/1:61,40:32:101:0.396:2	0/1:63,84:31:147:0.571:2
chr16	72130815	rs1050362	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,39:30:79:0.494:2	0/1:18,11:31:29:0.379:2	0/1:9,6:30:15:0.400:2	0/1:50,47:30:97:0.485:2	0/1:38,40:31:79:0.513:2	0/1:51,53:31:104:0.510:2	0/1:46,52:30:98:0.531:2	./.	./.	0/1:42,36:30:78:0.462:2	0/1:42,42:31:84:0.500:2
chr16	72131642	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:145,4:32:149:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr16	72133120	rs61749037	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,38:32:88:0.432:2	0/1:26,22:32:48:0.458:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	72134396	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,15:12:118:0.129:2
chr16	72135014	rs1050363	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:104,81:31:185:0.438:2	0/1:73,52:32:125:0.416:2	0/1:9,10:33:19:0.526:2	0/1:97,84:32:181:0.464:2	0/1:2,188:31:190:0.989:2	0/1:100,92:32:192:0.479:2	0/1:3,178:32:181:0.983:2	./.	0/1:105,86:33:191:0.450:2	0/1:94,90:32:184:0.489:2	0/1:95,91:31:186:0.489:2
chr16	72137561	rs2240243	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,35:31:83:0.422:2	0/1:33,16:31:49:0.327:2	0/1:6,11:30:17:0.647:2	0/1:70,65:31:135:0.481:2	0/1:96,85:31:181:0.470:2	0/1:79,63:31:142:0.444:2	0/1:80,88:32:169:0.524:2	./.	./.	0/1:57,42:31:100:0.424:2	0/1:37,62:32:99:0.626:2
chr16	72139184	rs2074626	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,33:32:60:0.550:2	0/1:16,27:32:43:0.628:2	./.	0/1:48,32:31:80:0.400:2	0/1:48,43:31:91:0.473:2	0/1:39,27:31:66:0.409:2	0/1:45,34:32:79:0.430:2	./.	./.	0/1:28,28:32:56:0.500:2	0/1:34,33:31:67:0.493:2
chr16	72139990	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:30:79:0.051:2	./.	./.	./.
chr16	72143357	rs77172371	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,19:17:75:0.253:2	0/1:68,15:18:83:0.181:2	0/1:31,9:15:40:0.225:2	0/1:58,14:16:72:0.194:2	0/1:79,20:19:99:0.202:2	./.	0/1:42,8:21:50:0.160:2	0/1:37,4:26:41:0.098:2
chr16	72154010	rs72787072	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,21:31:34:0.618:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	72156801	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,18:33:30:0.600:2	0/1:7,7:33:14:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	72156842	rs16973716	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:19,21:33:40:0.525:2	0/1:0,38:31:38:1.00:2	./.	0/1:1,38:31:39:0.974:2	./.	0/1:27,25:34:52:0.481:2	./.	0/1:45,24:32:69:0.348:2
chr16	72162966	rs34832584	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:32:12:0.500:2	./.	0/1:38,25:31:63:0.397:2	./.	0/1:38,18:32:56:0.321:2	./.	0/1:31,33:33:64:0.516:2	./.	./.
chr16	72174405	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:33:165:0.024:2
chr16	72184566	rs35370634	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:32:14:0.500:2	./.	0/1:45,32:32:77:0.416:2	./.	0/1:39,30:32:69:0.435:2	./.	0/1:54,39:33:93:0.419:2	./.	./.
chr16	72184629	rs217180	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,21:31:69:0.304:2	./.	0/1:31,24:31:55:0.436:2	./.
chr16	72184674	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,4:33:59:0.068:2	./.	./.	./.	./.	./.	./.	./.
chr16	72821178	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:32:74:0.054:2	./.	./.	./.	./.	./.
chr16	72821344	rs200992486	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,6:30:11:0.545:2	./.
chr16	72822285	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:31:149:0.027:2	./.	./.	./.
chr16	72822296	rs2228199	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,53:31:112:0.473:2	./.
chr16	72827758	rs699444	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,28:32:75:0.373:2	0/1:23,20:30:43:0.465:2	0/1:2,4:31:6:0.667:2	0/1:0,98:32:98:1.00:2	0/1:0,85:32:85:1.00:2	0/1:71,51:31:122:0.418:2	0/1:0,91:32:91:1.00:2	0/1:57,33:31:90:0.367:2	0/1:49,41:32:90:0.456:2	0/1:0,67:32:67:1.00:2	0/1:50,50:32:100:0.500:2
chr16	72829197	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:30:127:0.031:2	./.
chr16	72830248	rs142316393	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,43:32:78:0.551:2	./.	./.	./.
chr16	72830539	rs62051555	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,32:32:65:0.492:2	./.
chr16	72831399	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:30:98:0.041:2	./.
chr16	72832135	rs740178	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,66:33:140:0.471:2	0/1:41,50:33:91:0.549:2	0/1:8,14:33:22:0.636:2	0/1:0,141:33:141:1.00:2	0/1:0,94:32:94:1.00:2	0/1:69,58:32:127:0.457:2	0/1:0,137:33:137:1.00:2	0/1:83,83:33:166:0.500:2	0/1:68,86:34:154:0.558:2	0/1:0,106:33:106:1.00:2	0/1:73,80:32:153:0.523:2
chr16	72845829	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,6:32:116:0.052:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	72984595	rs2213978	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,82:31:179:0.458:2	0/1:63,37:30:100:0.370:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	72984668	rs2228200	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:45,39:32:84:0.464:2	0/1:28,35:32:63:0.556:2	0/1:13,14:32:27:0.519:2	./.	./.	./.	0/1:86,83:32:169:0.491:2	./.	0/1:64,50:32:114:0.439:2	./.	./.
chr16	72991660	rs10852515	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,22:32:41:0.537:2	0/1:14,7:31:21:0.333:2	0/1:0,5:32:5:1.00:2	0/1:0,31:31:31:1.00:2	0/1:30,25:31:55:0.455:2	0/1:0,45:31:45:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,46:31:46:1.00:2	0/1:30,19:32:49:0.388:2	0/1:1,27:32:28:0.964:2	0/1:27,32:32:59:0.542:2
chr16	72991715	rs4788682	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:26:5:1.00:2	./.	0/1:0,5:24:5:1.00:2	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.
chr16	72992197	rs61735549	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,102:31:191:0.534:2	./.
chr16	72992269	rs11075951	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:79,76:32:155:0.490:2	0/1:48,57:31:105:0.543:2	0/1:19,16:32:35:0.457:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	72992443	rs62640008	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,10:33:27:0.370:2	0/1:11,7:32:18:0.389:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	72993708	rs62640010	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,21:31:38:0.553:2	./.
chr16	72993831	rs7193297	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.
chr16	74339202	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,3:32:17:0.176:2	./.	./.	./.
chr16	74425306	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.
chr16	74425358	rs6564065	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,5:32:8:0.625:2	0/1:1,3:32:4:0.750:2	./.	./.	0/1:12,5:31:17:0.294:2	0/1:5,3:31:8:0.375:2	./.	./.	0/1:1,3:31:4:0.750:2	./.	./.
chr16	74425447	rs918678	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,32:33:50:0.640:2	./.	0/1:27,7:33:34:0.206:2	./.	0/1:11,20:33:31:0.645:2
chr16	74425548	rs2868591	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,43:30:65:0.662:2	0/1:7,29:32:36:0.806:2	./.	./.	0/1:39,64:30:103:0.621:2	0/1:110,47:31:157:0.299:2	0/1:3,65:31:68:0.956:2	0/1:118,24:31:142:0.169:2	0/1:2,46:31:48:0.958:2	./.	0/1:16,38:31:54:0.704:2
chr16	74425569	rs11641596	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:31,24:30:55:0.436:2	0/1:15,15:32:30:0.500:2	./.	./.	0/1:45,31:31:76:0.408:2	./.	0/1:33,22:32:56:0.400:2	./.	0/1:24,14:34:38:0.368:2	./.	0/1:30,14:32:44:0.318:2
chr16	74425570	rs376273156	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,11:30:72:0.153:2	./.	./.	./.	./.	./.	./.
chr16	74425702	rs199876218	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,4:32:82:0.049:2	./.	0/1:9,3:31:12:0.250:2	0/1:96,4:32:100:0.040:2	./.	0/1:135,9:32:144:0.063:2	./.	./.	0/1:79,11:33:90:0.122:2	0/1:88,4:33:92:0.043:2	0/1:93,9:30:102:0.088:2
chr16	74425703	rs200974911	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,4:31:82:0.049:2	./.	0/1:9,3:31:12:0.250:2	0/1:96,4:31:100:0.040:2	./.	0/1:132,9:31:141:0.064:2	./.	./.	0/1:81,9:31:90:0.100:2	0/1:94,4:31:98:0.041:2	0/1:98,9:30:107:0.084:2
chr16	74425732	rs77563894	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:109,6:31:115:0.052:2	./.	0/1:17,5:29:22:0.227:2	./.	./.	0/1:166,8:29:174:0.046:2	./.	./.	0/1:136,7:30:143:0.049:2	0/1:155,4:31:161:0.025:2	0/1:141,6:30:147:0.041:2
chr16	74425769	rs200486331	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,30:30:151:0.199:2	./.
chr16	74425770	rs75925982	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,20:32:125:0.160:2	0/1:69,6:31:75:0.080:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	74425793	rs199839508	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,31:32:165:0.188:2	./.	./.	./.	./.
chr16	74425826	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,5:32:114:0.044:2	./.	./.	0/1:71,9:30:80:0.113:2	0/1:75,5:33:80:0.063:2	./.
chr16	74425902	rs141751158	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,4:31:31:0.129:2	./.	./.	0/1:21,4:33:25:0.160:2	0/1:26,3:32:29:0.103:2	0/1:15,4:31:19:0.211:2
chr16	74442881	rs200240929	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:95,35:33:130:0.269:2	0/1:143,41:33:184:0.223:2	0/1:158,36:32:194:0.186:2	./.	0/1:139,52:34:191:0.272:2	./.	0/1:118,65:34:183:0.355:2	0/1:153,19:34:172:0.110:2	0/1:131,43:32:174:0.247:2
chr16	74442936	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,12:32:197:0.061:2	./.
chr16	74442971	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,5:33:186:0.027:2	./.	./.	./.	./.
chr16	74443490	rs200676113	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:180,12:31:192:0.063:2	0/1:99,6:33:105:0.057:2	./.	0/1:190,4:32:194:0.021:2	0/1:186,6:27:192:0.031:2	0/1:181,12:30:193:0.062:2	./.	0/1:173,23:29:196:0.117:2	0/1:183,10:31:193:0.052:2	./.	./.
chr16	74443542	rs146555914	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,9:33:23:0.391:2	./.	./.	./.	./.	0/1:111,70:32:182:0.387:2	./.	0/1:129,40:32:170:0.237:2	./.
chr16	74443733	rs201939921	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,42:30:61:0.689:2	0/1:6,19:32:25:0.760:2	0/1:0,9:31:9:1.00:2	0/1:0,51:32:51:1.00:2	0/1:1,58:30:59:0.983:2	0/1:83,36:32:119:0.303:2	0/1:24,53:32:77:0.688:2	0/1:32,72:31:104:0.692:2	0/1:0,35:32:35:1.00:2	0/1:22,44:31:66:0.667:2	0/1:0,39:32:39:1.00:2
chr16	74444838	rs142404156	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:123,56:32:179:0.313:2	0/1:146,47:32:193:0.244:2	0/1:36,34:32:70:0.486:2	0/1:111,71:33:182:0.390:2	0/1:90,97:32:187:0.519:2	0/1:178,12:31:191:0.063:2	0/1:157,38:32:195:0.195:2	0/1:125,69:32:194:0.356:2	0/1:120,73:33:193:0.378:2	0/1:115,70:31:185:0.378:2	0/1:109,75:32:184:0.408:2
chr16	74444863	rs148861848	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:166,30:31:196:0.153:2	./.	./.	0/1:168,29:32:197:0.147:2	./.	0/1:168,27:32:195:0.138:2	0/1:138,28:32:167:0.169:2
chr16	74445579	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,24:33:194:0.124:2	./.	./.	./.	./.
chr16	74445632	rs150933152	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,23:31:194:0.119:2	./.	./.	./.	./.
chr16	74446104	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,19:29:87:0.218:2	./.	./.	./.	./.
chr16	74446719	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,13:17:150:0.087:2	./.
chr16	74446735	rs200596363	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,22:30:157:0.141:2	0/1:62,11:30:73:0.151:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	74446738	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:149,10:30:159:0.063:2	0/1:70,5:28:75:0.067:2	./.	./.	0/1:178,8:27:186:0.043:2	./.	./.	./.	0/1:165,14:29:179:0.078:2	0/1:159,5:31:166:0.030:2	0/1:149,9:28:159:0.057:2
chr16	74447510	rs201069655	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:165,5:29:170:0.029:2	./.	./.	./.	./.	./.	0/1:186,6:30:192:0.031:2	./.	0/1:172,5:31:178:0.028:2	./.	0/1:152,7:30:159:0.044:2
chr16	74447514	rs2650549	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:126,41:30:168:0.246:2	0/1:86,34:31:120:0.283:2	./.	0/1:188,5:27:193:0.026:2	0/1:166,30:32:197:0.153:2	0/1:141,43:33:184:0.234:2	0/1:147,47:33:194:0.242:2	0/1:142,50:33:193:0.260:2	0/1:134,47:32:181:0.260:2	0/1:152,32:32:184:0.174:2	0/1:150,7:29:157:0.045:2
chr16	74451960	rs201007386	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:175,11:32:186:0.059:2	0/1:179,9:32:188:0.048:2	0/1:5,6:32:11:0.545:2	0/1:183,14:30:197:0.071:2	0/1:193,4:32:197:0.020:2	./.	0/1:124,13:30:137:0.095:2	./.	0/1:121,18:32:139:0.129:2	0/1:174,20:30:194:0.103:2	0/1:145,10:32:155:0.065:2
chr16	74451961	rs151079980	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,8:32:197:0.041:2	./.	./.	./.	./.	./.
chr16	74451970	rs201240581	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:171,11:33:182:0.060:2	0/1:179,9:34:188:0.048:2	0/1:5,5:33:10:0.500:2	0/1:182,10:34:192:0.052:2	./.	./.	0/1:140,11:31:152:0.073:2	./.	0/1:140,16:33:156:0.103:2	0/1:168,19:33:187:0.102:2	0/1:159,8:32:167:0.048:2
chr16	74452035	rs201114391	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:184,7:28:191:0.037:2	./.	0/1:1,3:29:4:0.750:2	0/1:171,16:27:187:0.086:2	./.	./.	0/1:172,22:28:194:0.113:2	0/1:182,11:28:193:0.057:2	0/1:163,21:28:185:0.114:2	0/1:165,16:28:181:0.088:2	0/1:183,7:27:190:0.037:2
chr16	74452050	rs146433329	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:181,9:32:190:0.047:2	./.	./.	0/1:184,5:31:190:0.026:2	./.	./.	./.	./.	0/1:172,12:30:184:0.065:2	0/1:170,8:33:178:0.045:2	./.
chr16	74452071	rs372741573	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:75,111:32:186:0.597:2	0/1:63,122:32:185:0.659:2	./.	./.	0/1:85,109:32:194:0.562:2	./.	./.	./.	./.	./.	0/1:61,78:32:139:0.561:2
chr16	74452114	.	A	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:154,10:29:164:0.061:2	0/1:172,7:29:179:0.039:2	0/1:16,6:30:22:0.273:2	0/1:179,8:29:187:0.043:2	./.	./.	0/1:83,7:27:90:0.078:2	0/1:163,7:28:170:0.041:2	0/1:119,10:29:129:0.078:2	0/1:190,5:31:195:0.026:2	./.
chr16	74452122	rs201794732	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,9:30:24:0.375:2	./.	./.	./.	./.	0/1:151,13:31:165:0.079:2	./.	0/1:165,27:30:192:0.141:2	./.
chr16	74452125	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,15:28:156:0.096:2	./.	./.	./.	./.	./.
chr16	74452141	.	A	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:147,8:32:155:0.052:2	0/1:138,12:32:150:0.080:2	0/1:17,7:33:24:0.292:2	0/1:171,16:30:187:0.086:2	0/1:149,9:32:158:0.057:2	./.	0/1:84,16:32:100:0.160:2	0/1:165,7:30:172:0.041:2	0/1:97,13:32:110:0.118:2	0/1:155,7:29:163:0.043:2	0/1:73,11:32:84:0.131:2
chr16	74455099	rs140121789	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:33:140:0.029:2	./.	./.
chr16	74455164	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:145,12:30:157:0.076:2	./.	./.	./.	./.	./.	./.	./.
chr16	74486009	rs150213948	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,4:32:97:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr16	74490556	rs9945	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,26:32:61:0.426:2	0/1:14,8:32:22:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	74490587	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:29:96:0.042:2	./.	./.	./.	./.	./.
chr16	74499589	rs2303275	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,42:29:99:0.424:2	./.	./.	0/1:66,49:30:115:0.426:2	./.	0/1:65,58:31:123:0.472:2	./.	0/1:80,61:31:141:0.433:2
chr16	74506269	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:32:61:0.066:2	./.	./.	./.	./.
chr16	74537591	rs4887772	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:47,54:31:101:0.535:2	0/1:28,38:32:66:0.576:2	0/1:0,19:30:19:1.00:2	./.	0/1:68,69:31:137:0.504:2	0/1:0,134:31:134:1.00:2	0/1:83,56:30:139:0.403:2	0/1:0,157:31:157:1.00:2	0/1:65,77:33:142:0.542:2	0/1:0,150:31:150:1.00:2	0/1:68,69:32:137:0.504:2
chr16	74664743	rs7193541	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:26,31:32:57:0.544:2	0/1:22,18:32:40:0.450:2	0/1:4,6:31:10:0.600:2	./.	0/1:53,28:31:81:0.346:2	0/1:2,80:32:82:0.976:2	0/1:53,46:33:99:0.465:2	0/1:51,52:32:103:0.505:2	0/1:57,45:33:102:0.441:2	0/1:32,28:32:60:0.467:2	0/1:47,42:33:89:0.472:2
chr16	74664810	rs7188880	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:32,33:32:65:0.508:2	0/1:20,21:32:41:0.512:2	0/1:3,3:29:6:0.500:2	./.	0/1:48,25:32:73:0.342:2	0/1:0,53:32:53:1.00:2	0/1:42,34:33:76:0.447:2	0/1:39,45:32:84:0.536:2	0/1:48,37:32:85:0.435:2	0/1:0,56:32:56:1.00:2	0/1:45,27:33:72:0.375:2
chr16	74670458	rs4888262	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:26,13:33:39:0.333:2	0/1:19,13:32:32:0.406:2	0/1:1,3:32:4:0.750:2	./.	0/1:32,20:31:52:0.385:2	0/1:0,26:31:26:1.00:2	0/1:21,16:32:37:0.432:2	0/1:17,16:32:33:0.485:2	0/1:40,16:32:56:0.286:2	0/1:0,23:32:23:1.00:2	0/1:44,32:32:76:0.421:2
chr16	74678537	rs138454127	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,44:30:97:0.454:2	./.	./.	./.	./.
chr16	74695079	rs8058922	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:31,22:32:53:0.415:2	0/1:16,18:31:34:0.529:2	0/1:0,12:31:12:1.00:2	./.	0/1:54,34:31:88:0.386:2	0/1:0,76:31:76:1.00:2	0/1:36,43:31:79:0.544:2	0/1:0,63:31:63:1.00:2	0/1:33,30:33:63:0.476:2	0/1:0,51:31:51:1.00:2	0/1:38,18:32:56:0.321:2
chr16	74709610	rs34389205	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,80:32:178:0.449:2	./.	./.	./.	./.	./.	./.	0/1:104,86:32:190:0.453:2
chr16	74725190	rs147269187	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:30:6:0.800:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	74725282	rs35430251	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,35:31:68:0.515:2	./.	./.	./.	./.	./.
chr16	74750351	rs11554620	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,107:31:108:0.991:2	./.	./.
chr16	74750396	rs11554621	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,32:32:71:0.451:2	./.	0/1:47,41:32:88:0.466:2	0/1:0,70:33:70:1.00:2	./.	0/1:30,43:31:73:0.589:2
chr16	74750405	rs2301865	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,28:33:58:0.483:2	0/1:13,24:32:37:0.649:2	0/1:0,8:32:8:1.00:2	0/1:0,53:32:53:1.00:2	0/1:1,70:31:71:0.986:2	0/1:0,63:31:63:1.00:2	0/1:40,42:32:82:0.512:2	0/1:0,72:32:72:1.00:2	./.	0/1:25,26:32:51:0.510:2	0/1:1,70:32:71:0.986:2
chr16	74773995	rs35874850	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,75:31:159:0.472:2	./.	0/1:95,52:32:147:0.354:2	./.	./.	./.	./.
chr16	74808425	rs929881	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	0/1:0,3:31:3:1.00:2	0/1:1,3:30:4:0.750:2	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.
chr16	74919599	rs191535208	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,33:31:63:0.524:2	./.	./.	./.	./.	./.	./.	./.
chr16	74920191	rs14308	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:40,28:31:68:0.412:2	0/1:29,21:32:50:0.420:2	./.	./.	./.	./.	./.	0/1:62,51:31:113:0.451:2	./.	./.	./.
chr16	74921661	rs9940014	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:21,5:33:26:0.192:2	0/1:9,12:32:21:0.571:2	./.	./.	./.	./.	./.	0/1:24,25:31:49:0.510:2	./.	./.	./.
chr16	74976702	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:31:115:0.035:2	./.	./.	./.	./.	./.
chr16	74983701	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,6:30:62:0.097:2	./.
chr16	75018874	rs12448858	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:28,16:32:44:0.364:2	0/1:9,11:31:20:0.550:2	./.	0/1:47,28:29:75:0.373:2	./.	./.	0/1:38,33:30:71:0.465:2	./.	./.	./.	./.
chr16	75147544	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,4:30:81:0.049:2	./.	./.	./.	./.	./.	./.	./.
chr16	75200719	rs144244672	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,43:33:96:0.448:2	./.
chr16	75238068	rs1049303	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,47:31:125:0.376:2	./.	./.	0/1:32,29:32:61:0.475:2	./.
chr16	75238103	rs4737	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,32:30:68:0.471:2	0/1:28,22:30:50:0.440:2	0/1:0,8:30:8:1.00:2	0/1:0,75:30:75:1.00:2	0/1:0,79:30:79:1.00:2	0/1:0,114:30:114:1.00:2	0/1:0,130:30:130:1.00:2	0/1:59,66:30:126:0.528:2	0/1:0,80:31:80:1.00:2	0/1:0,62:31:62:1.00:2	0/1:1,66:30:67:0.985:2
chr16	75239861	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,19:27:108:0.176:2	0/1:52,17:29:69:0.246:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	75239882	rs201071994	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,14:33:85:0.165:2	0/1:46,10:33:56:0.179:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,15:33:54:0.278:2
chr16	75256875	rs371359313	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,17:32:68:0.254:2	0/1:27,9:32:36:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,10:31:45:0.222:2
chr16	75256896	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,25:27:87:0.287:2	0/1:33,10:30:43:0.233:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	75258617	rs2287990	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,9:31:11:0.818:2	0/1:17,28:31:45:0.622:2	0/1:13,17:29:30:0.567:2	0/1:14,25:30:39:0.641:2	./.	./.	0/1:21,23:30:44:0.523:2	./.	./.
chr16	75263661	rs7190458	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,64:30:130:0.492:2	./.	./.	./.	./.	0/1:40,38:30:78:0.487:2	./.	./.
chr16	75269003	rs11545087	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,6:31:10:0.600:2	./.	./.	0/1:8,12:31:20:0.600:2	./.
chr16	75269267	rs3169330	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:0,6:32:6:1.00:2	./.	0/1:0,10:30:10:1.00:2	./.	0/1:5,6:31:11:0.545:2	0/1:0,6:33:6:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,6:33:6:1.00:2
chr16	75269534	rs3743613	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:31:9:1.00:2	0/1:24,38:31:62:0.613:2	0/1:17,38:31:55:0.691:2	0/1:24,20:31:44:0.455:2	0/1:10,35:32:45:0.778:2	./.	0/1:8,36:32:44:0.818:2	./.	0/1:9,18:32:27:0.667:2
chr16	75276545	rs4990727	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:83,5:24:89:0.057:2	./.	./.	./.	0/1:129,5:28:137:0.037:2	0/1:146,7:28:154:0.046:2	./.	./.	./.	./.	./.
chr16	75276775	rs1035539	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,5:32:6:0.833:2	0/1:1,3:27:4:0.750:2	0/1:1,9:26:10:0.900:2	./.	0/1:0,9:30:9:1.00:2	0/1:5,4:34:9:0.444:2	0/1:4,7:30:11:0.636:2	0/1:0,2:32:2:1.00:2
chr16	75301838	rs148519476	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,4:29:20:0.200:2	./.	./.	0/1:7,4:29:11:0.364:2	./.
chr16	75327916	rs6624	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:30:72:1.00:2	0/1:0,44:30:44:1.00:2	0/1:4,4:30:8:0.500:2	0/1:62,31:30:93:0.333:2	0/1:1,74:29:75:0.987:2	0/1:52,41:30:93:0.441:2	0/1:0,69:31:69:1.00:2	0/1:64,63:31:127:0.496:2	0/1:57,43:32:100:0.430:2	0/1:0,85:30:85:1.00:2	0/1:0,100:30:101:1.00:2
chr16	75563089	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,4:29:74:0.054:2	./.	./.	./.	./.	./.	./.	./.
chr16	75563330	rs3826107	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:30,20:30:50:0.400:2	0/1:20,16:32:36:0.444:2	./.	./.	0/1:46,38:30:84:0.452:2	./.	./.	0/1:35,27:30:63:0.435:2	./.	./.	./.
chr16	75563746	rs8048818	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:6,8:32:14:0.571:2	0/1:11,5:32:16:0.313:2	./.	./.	0/1:16,6:31:22:0.273:2	./.	./.	0/1:16,10:31:26:0.385:2	./.	./.	./.
chr16	75564287	rs3784932	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:18,13:30:31:0.419:2	0/1:6,3:28:9:0.333:2	0/1:2,3:29:5:0.600:2	./.	0/1:16,12:30:28:0.429:2	./.	./.	0/1:20,15:29:35:0.429:2	./.	./.	./.
chr16	75565132	rs149460876	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	75565232	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,4:25:17:0.235:2	./.	./.	./.	./.	./.
chr16	75565236	rs200831257	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,6:15:20:0.300:2	./.	./.	./.	./.	./.	./.	./.
chr16	75565239	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,9:14:23:0.391:2	./.	./.	./.	./.	./.	./.	0/1:18,10:10:28:0.357:2
chr16	75565242	rs2650399	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:20,9:30:29:0.310:2	./.	./.	./.	0/1:7,5:30:12:0.417:2	./.	./.	0/1:18,5:26:23:0.217:2	./.	./.	./.
chr16	75565420	rs2641806	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:22,16:31:39:0.421:2	0/1:15,22:31:37:0.595:2	./.	./.	0/1:28,37:30:65:0.569:2	./.	./.	0/1:42,32:31:74:0.432:2	./.	./.	./.
chr16	75574030	rs2242406	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:30:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	75600353	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,4:32:34:0.118:2	./.	0/1:28,3:31:31:0.097:2	./.	0/1:19,3:31:22:0.136:2	./.	./.	./.
chr16	75646576	rs3743599	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,11:31:17:0.647:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	75646685	rs3743598	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:29:12:0.500:2	./.	./.	./.	./.	0/1:32,39:32:71:0.549:2	./.	./.	./.
chr16	75669867	rs141539149	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,56:28:108:0.519:2	./.
chr16	75675609	rs5030748	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,40:33:41:0.976:2	0/1:24,24:31:48:0.500:2	./.
chr16	75681816	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:31:77:0.052:2	./.
chr16	75681819	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:29:77:0.052:2	./.
chr16	75690279	rs4888444	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:33:10:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	76482747	rs34251012	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,91:32:169:0.538:2	./.	./.	./.	./.	./.	./.	./.
chr16	76486529	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,25:33:43:0.581:2	./.	./.
chr16	76486623	rs8055272	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,16:31:32:0.500:2	./.	./.	./.	./.
chr16	76528940	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:32:162:0.025:2	./.	./.	./.	./.
chr16	76528951	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:31:149:0.027:2	./.	./.	./.	./.
chr16	76532583	rs12933808	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:30:70:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,6:28:6:1.00:2	0/1:0,64:30:64:1.00:2	0/1:0,44:30:44:1.00:2	0/1:0,60:30:60:1.00:2	0/1:1,55:31:56:0.982:2	0/1:1,65:30:66:0.985:2	0/1:1,63:31:64:0.984:2	0/1:0,61:31:61:1.00:2	0/1:71,45:31:116:0.388:2
chr16	76555177	rs112577515	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,10:28:23:0.435:2	./.
chr16	76569625	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,14:33:55:0.255:2	0/1:12,10:31:22:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	76587202	rs7202925	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,14:32:31:0.452:2	0/1:71,75:33:146:0.514:2	./.	./.	./.	./.	./.	./.	0/1:2,150:33:152:0.987:2
chr16	76587220	rs144247939	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,60:29:124:0.484:2
chr16	76587331	rs7184958	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,8:30:17:0.471:2	0/1:70,66:30:136:0.485:2	./.	./.	./.	./.	./.	./.	0/1:3,101:29:104:0.971:2
chr16	77225440	rs35193130	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,40:28:88:0.455:2	./.	./.	./.	./.	./.	./.	0/1:41,44:30:85:0.518:2
chr16	77228629	rs2232503	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:31:29:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,30:31:30:1.00:2
chr16	77228866	rs2232504	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:29:52:1.00:2	0/1:0,46:29:46:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,95:30:95:1.00:2	0/1:47,45:29:92:0.489:2	0/1:54,45:29:99:0.455:2	0/1:50,43:30:93:0.462:2	0/1:0,110:29:110:1.00:2	0/1:35,29:30:64:0.453:2	0/1:0,55:29:55:1.00:2	0/1:1,45:30:46:0.978:2
chr16	77228971	rs2232506	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:32:11:0.273:2	0/1:10,12:32:22:0.545:2	./.	./.	./.	0/1:15,18:31:33:0.545:2	./.	./.	./.	./.	./.
chr16	77233330	rs11544784	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,29:29:57:0.509:2	./.	./.	./.	./.	./.	./.	0/1:36,34:28:70:0.486:2
chr16	77233338	rs8398	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:26,31:32:57:0.544:2	0/1:13,18:32:31:0.581:2	0/1:0,14:31:14:1.00:2	./.	0/1:40,54:30:94:0.574:2	./.	0/1:34,29:30:63:0.460:2	0/1:48,37:30:85:0.435:2	0/1:44,36:31:80:0.450:2	0/1:40,25:30:65:0.385:2	./.
chr16	77233394	rs4888607	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:32:49:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,58:32:58:1.00:2
chr16	77243330	rs61740088	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,21:32:35:0.600:2
chr16	77245139	rs61746433	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,44:29:120:0.367:2	./.	./.	./.	./.	./.	./.	0/1:54,41:29:95:0.432:2
chr16	77246110	rs9924958	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,16:33:42:0.381:2	./.	./.	./.	./.	./.	./.	0/1:13,5:25:18:0.278:2
chr16	77246218	rs13331769	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,19:31:19:1.00:2	0/1:2,9:32:11:0.818:2	0/1:0,4:30:4:1.00:2	0/1:0,3:32:3:1.00:2	0/1:4,10:31:14:0.714:2	./.	0/1:1,4:30:5:0.800:2	0/1:0,4:28:4:1.00:2
chr16	77246467	rs192745003	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:34:4:0.500:2
chr16	77246517	rs62049594	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,3:30:6:0.500:2	0/1:1,5:29:6:0.833:2	./.	./.	0/1:0,4:30:4:1.00:2	./.	./.
chr16	77246795	rs2278049	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:22:8:0.500:2	./.	./.	./.	./.	0/1:0,5:27:5:1.00:2	./.	0/1:3,3:27:6:0.500:2	0/1:2,3:27:5:0.600:2	0/1:3,3:27:6:0.500:2	./.
chr16	77323235	rs3743749	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,16:31:41:0.390:2	./.	0/1:8,11:32:19:0.579:2	./.
chr16	77325325	rs35478105	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,56:31:57:0.982:2	0/1:58,38:31:96:0.396:2	0/1:55,37:32:92:0.402:2	./.	0/1:75,56:33:131:0.427:2	./.	0/1:66,40:32:106:0.377:2
chr16	77327018	rs35296483	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:32:24:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,3:32:3:1.00:2	0/1:17,26:31:43:0.605:2	./.	./.	./.	./.	./.	./.	./.
chr16	77327042	rs61754842	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,15:33:47:0.319:2
chr16	77328895	rs12935229	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,66:30:67:0.985:2	0/1:1,55:31:56:0.982:2	0/1:12,7:30:19:0.368:2	0/1:69,76:30:145:0.524:2	./.	./.	./.	./.	./.	./.	./.
chr16	77328990	rs12935394	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,47:31:49:0.979:2	0/1:0,35:31:35:1.00:2	0/1:1,4:30:5:0.800:2	0/1:47,46:30:93:0.495:2	./.	./.	./.	./.	./.	./.	./.
chr16	77334230	rs201338151	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,14:24:53:0.264:2	0/1:37,10:15:47:0.213:2	0/1:8,5:21:13:0.385:2	0/1:71,43:26:114:0.377:2	0/1:55,44:25:99:0.444:2	0/1:55,39:25:94:0.415:2	0/1:57,37:22:94:0.394:2	0/1:82,43:26:125:0.344:2	0/1:72,33:22:105:0.314:2	0/1:46,22:22:68:0.324:2	0/1:83,38:24:121:0.314:2
chr16	77334233	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,11:28:86:0.128:2	./.	./.	./.	./.	./.	./.	0/1:83,9:24:92:0.098:2
chr16	77353802	rs143047414	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,24:32:46:0.522:2	./.	./.	./.	./.	./.	./.	./.
chr16	77353881	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,19:32:34:0.559:2	./.	./.
chr16	77353973	rs9930984	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,10:29:18:0.556:2	0/1:3,4:30:7:0.571:2	./.	./.	./.	0/1:8,10:31:18:0.556:2	./.	0/1:12,17:31:29:0.586:2	0/1:8,21:31:29:0.724:2	0/1:0,23:32:23:1.00:2	0/1:0,22:32:22:1.00:2
chr16	77359919	rs11640912	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,19:32:19:1.00:2	0/1:5,3:31:8:0.375:2	0/1:28,22:30:50:0.440:2	0/1:22,27:31:49:0.551:2	0/1:25,24:30:49:0.490:2	./.	0/1:30,14:29:44:0.318:2	0/1:15,17:32:32:0.531:2	0/1:22,11:32:33:0.333:2	0/1:0,47:32:47:1.00:2
chr16	77389956	rs8059275	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:30:52:1.00:2	0/1:0,41:29:41:1.00:2	0/1:1,2:31:3:0.667:2	0/1:62,43:30:105:0.410:2	0/1:0,62:29:62:1.00:2	0/1:0,71:30:71:1.00:2	0/1:39,49:30:88:0.557:2	0/1:1,78:30:79:0.987:2	0/1:0,65:31:65:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,81:30:81:1.00:2
chr16	77401479	rs35701343	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,62:31:119:0.521:2	./.	./.	./.
chr16	77401545	rs11643211	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,65:33:143:0.455:2	0/1:74,73:32:147:0.497:2	./.	./.	0/1:183,7:32:190:0.037:2	0/1:112,67:33:179:0.374:2	0/1:0,140:33:141:1.00:2	0/1:1,152:32:153:0.993:2
chr16	77769834	rs308925	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:45,55:32:101:0.550:2	0/1:42,27:32:69:0.391:2	0/1:15,5:32:20:0.250:2	./.	./.	./.	0/1:99,82:32:181:0.453:2	./.	./.	./.	0/1:72,79:32:151:0.523:2
chr16	77775672	rs16946429	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,58:32:134:0.433:2	./.	0/1:93,52:33:145:0.359:2	./.	./.	./.	./.
chr16	77850887	rs148203612	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,29:30:77:0.377:2	0/1:15,23:31:38:0.605:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	78005749	rs61735513	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,13:31:51:0.255:2	./.	./.
chr16	78011559	rs3751769	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,44:31:117:0.376:2	./.	./.	./.
chr16	78064351	rs2293776	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:24,10:30:34:0.294:2	0/1:17,6:33:23:0.261:2	./.	0/1:27,15:33:42:0.357:2	./.	0/1:26,21:33:47:0.447:2	./.	./.	./.	0/1:22,23:33:45:0.511:2	0/1:35,26:34:61:0.426:2
chr16	78064480	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,23:31:66:0.348:2	0/1:36,14:31:50:0.280:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	78133950	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:34:5:0.800:2	0/1:5,16:33:21:0.762:2	./.	./.	./.	./.	./.	./.	./.
chr16	78142308	rs67493355	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,3:30:25:0.120:2	./.	0/1:13,9:31:22:0.409:2	./.	./.	0/1:17,3:34:20:0.150:2	0/1:19,7:33:26:0.269:2	0/1:0,26:32:26:1.00:2
chr16	78148935	rs144601717	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,18:32:39:0.462:2	./.	./.	./.	./.	./.	./.	./.
chr16	78149000	rs141361080	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,48:32:97:0.495:2	./.	./.	./.	./.	./.
chr16	78312489	rs8048830	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,47:33:165:0.285:2	./.	./.
chr16	78312497	rs8050128	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:67,45:32:112:0.402:2	0/1:29,39:32:69:0.574:2	0/1:18,12:31:30:0.400:2	0/1:91,76:31:167:0.455:2	0/1:74,37:31:111:0.333:2	./.	0/1:49,43:31:92:0.467:2	0/1:77,45:31:122:0.369:2	0/1:104,42:32:147:0.288:2	0/1:72,58:32:130:0.446:2	./.
chr16	78420775	rs11545029	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,20:31:65:0.308:2	0/1:24,15:32:39:0.385:2	0/1:0,7:31:7:1.00:2	0/1:37,21:31:58:0.362:2	./.	0/1:29,22:31:51:0.431:2	0/1:34,31:32:65:0.477:2	0/1:45,28:31:73:0.384:2	0/1:31,42:32:73:0.575:2	0/1:0,59:32:59:1.00:2	0/1:1,69:32:70:0.986:2
chr16	78466478	rs79771882	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,35:31:93:0.376:2	./.
chr16	79633808	rs371355137	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:23:8:0.500:2	./.	./.	./.	./.	./.
chr16	79633811	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,4:28:12:0.333:2	./.	./.	./.	./.	./.
chr16	79634579	rs2288066	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:28,16:30:44:0.364:2	0/1:29,14:29:43:0.326:2	0/1:3,5:30:8:0.625:2	./.	./.	./.	./.	./.	./.	0/1:17,31:29:48:0.646:2	./.
chr16	80583497	rs11866734	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:2,42:32:44:0.955:2	0/1:0,34:32:34:1.00:2	./.	0/1:31,24:33:55:0.436:2	./.	0/1:26,42:32:68:0.618:2	./.	0/1:43,39:32:82:0.476:2	0/1:42,30:34:72:0.417:2	./.	0/1:1,63:31:64:0.984:2
chr16	80718879	rs8049284	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:47,29:31:76:0.382:2	0/1:28,36:32:64:0.563:2	./.	0/1:1,91:33:92:0.989:2	0/1:62,67:33:129:0.519:2	0/1:1,83:32:85:0.988:2	0/1:57,57:33:114:0.500:2	0/1:73,53:33:126:0.421:2	0/1:52,49:34:101:0.485:2	0/1:42,25:33:67:0.373:2	0/1:0,82:33:82:1.00:2
chr16	81010073	rs1127390	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,5:33:20:0.250:2	./.	./.	0/1:0,8:33:8:1.00:2
chr16	81050965	rs935939	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:33:26:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,44:32:44:1.00:2
chr16	81056276	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:34:102:0.039:2	./.	./.
chr16	81056441	rs3743503	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,19:32:42:0.452:2	./.	./.	./.
chr16	81061827	rs2549887	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,50:31:97:0.515:2	0/1:34,27:32:61:0.443:2	0/1:0,11:31:11:1.00:2	0/1:0,114:31:114:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,82:31:82:1.00:2	0/1:0,106:32:106:1.00:2	0/1:69,69:31:138:0.500:2	0/1:0,117:32:117:1.00:2	0/1:0,62:32:62:1.00:2	./.
chr16	81062171	rs2602428	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,20:32:29:0.690:2	0/1:3,6:32:9:0.667:2	0/1:0,6:31:6:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,26:31:26:1.00:2	0/1:14,13:31:27:0.481:2	0/1:0,29:32:29:1.00:2	0/1:0,25:31:25:1.00:2	./.
chr16	81069737	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	81076821	rs2278022	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,29:32:64:0.453:2	./.	./.	./.
chr16	81077204	rs16954513	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,27:31:63:0.429:2	./.	./.	./.
chr16	81077646	rs151075107	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:32:101:0.040:2	./.	./.	./.	./.	./.
chr16	81077691	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:32:156:0.026:2	./.	./.	./.	./.	./.
chr16	81077915	rs2257378	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,148:32:151:0.980:2	0/1:0,68:32:68:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,171:32:171:1.00:2	0/1:8,97:31:105:0.924:2	0/1:3,148:32:152:0.980:2	0/1:6,119:32:126:0.952:2	0/1:111,68:32:179:0.380:2	0/1:10,162:33:172:0.942:2	0/1:4,135:32:139:0.971:2	0/1:2,179:32:181:0.989:2
chr16	81094951	rs10459872	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,79:33:169:0.467:2	./.	./.	./.
chr16	81095091	rs7198494	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,181:32:185:0.984:2	0/1:98,92:32:190:0.484:2	./.	./.	./.	0/1:0,187:32:187:1.00:2	./.	./.
chr16	81095099	rs2287995	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,67:29:195:0.344:2	./.	./.	./.
chr16	81095363	rs804885	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,18:29:19:0.947:2	0/1:0,12:31:12:1.00:2	./.	0/1:1,19:29:20:0.950:2	0/1:0,17:28:17:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,16:30:16:1.00:2	0/1:13,12:27:25:0.480:2	0/1:0,20:30:20:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,35:31:35:1.00:2
chr16	81116533	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:31:164:0.024:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	81118093	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:31:96:0.042:2
chr16	81121216	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,3:32:43:0.070:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	81124215	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:191,4:33:195:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr16	81142257	rs1869348	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:32:35:1.00:2	0/1:1,21:32:22:0.955:2	0/1:1,5:32:6:0.833:2	0/1:37,34:31:71:0.479:2	0/1:36,33:31:70:0.478:2	0/1:43,32:32:75:0.427:2	0/1:0,54:31:54:1.00:2	0/1:1,65:31:66:0.985:2	0/1:0,58:32:58:1.00:2	0/1:22,19:32:41:0.463:2	0/1:2,65:32:67:0.970:2
chr16	81145807	rs8054182	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:32:70:1.00:2	0/1:0,25:33:25:1.00:2	0/1:0,3:35:3:1.00:2	0/1:0,73:33:73:1.00:2	0/1:0,108:33:108:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,92:32:92:1.00:2	0/1:1,72:32:73:0.986:2	0/1:0,82:33:82:1.00:2	0/1:0,54:33:54:1.00:2	0/1:0,71:33:71:1.00:2
chr16	81151122	rs4889238	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,33:32:33:1.00:2	0/1:0,13:31:13:1.00:2	./.	0/1:0,37:32:37:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,47:33:47:1.00:2	0/1:0,33:34:33:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,45:32:45:1.00:2
chr16	81157324	rs4889241	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:31:65:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,151:31:151:1.00:2	0/1:0,120:30:120:1.00:2	0/1:0,120:31:120:1.00:2	0/1:1,134:31:135:0.993:2	0/1:3,107:30:110:0.973:2	0/1:1,102:32:103:0.990:2	0/1:0,100:31:100:1.00:2	0/1:0,107:31:107:1.00:2
chr16	81157353	rs16954698	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,56:32:118:0.475:2	./.
chr16	81157385	rs8050204	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:30,34:30:64:0.531:2	0/1:22,22:30:44:0.500:2	./.	./.	./.	./.	0/1:59,51:30:110:0.464:2	./.	./.	./.	0/1:0,105:31:105:1.00:2
chr16	81161552	rs16954717	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:62,12:30:74:0.162:2	0/1:27,4:31:31:0.129:2	./.	./.	./.	./.	0/1:109,22:30:131:0.168:2	./.	./.	./.	0/1:0,35:30:35:1.00:2
chr16	81161569	rs75417926	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:27:5:1.00:2
chr16	81161571	rs80097269	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:23:5:1.00:2
chr16	81161578	rs7206183	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:2,48:33:50:0.960:2	0/1:1,25:33:26:0.962:2	./.	./.	./.	./.	0/1:1,86:32:87:0.989:2	0/1:95,75:33:170:0.441:2	./.	./.	0/1:0,16:35:16:1.00:2
chr16	81161608	rs16954722	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:29,12:28:41:0.293:2	0/1:20,13:27:33:0.394:2	./.	./.	./.	./.	0/1:71,10:27:81:0.123:2	./.	./.	./.	0/1:0,38:29:38:1.00:2
chr16	81167194	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,8:32:190:0.042:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	81173136	rs12918619	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:29:62:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,13:29:13:1.00:2	0/1:1,96:29:97:0.990:2	0/1:0,120:29:120:1.00:2	0/1:0,94:29:94:1.00:2	0/1:0,128:29:128:1.00:2	0/1:65,53:30:118:0.449:2	0/1:0,92:30:92:1.00:2	0/1:0,72:29:72:1.00:2	0/1:0,75:30:75:1.00:2
chr16	81173193	rs4889244	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,16:31:16:1.00:2	0/1:1,130:32:131:0.992:2	0/1:0,165:31:165:1.00:2	0/1:0,140:31:140:1.00:2	./.	0/1:73,68:32:141:0.482:2	0/1:0,108:32:108:1.00:2	0/1:55,51:32:106:0.481:2	0/1:1,106:32:107:0.991:2
chr16	81174978	rs117006360	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,6:31:20:0.300:2	./.	./.	./.
chr16	81174992	rs117414860	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,7:28:26:0.269:2	./.	./.	./.
chr16	81174999	rs76162903	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,8:33:28:0.286:2	./.	./.	./.
chr16	81175016	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,3:32:32:0.094:2	./.	./.	./.	./.	./.	./.	./.
chr16	81175103	rs35941327	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,30:31:30:1.00:2	0/1:0,18:31:18:1.00:2	./.	./.	./.	./.	0/1:29,10:31:39:0.256:2	./.	./.	0/1:14,14:31:28:0.500:2	./.
chr16	81180988	rs7194136	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,14:33:14:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,54:32:54:1.00:2	./.	0/1:49,39:32:88:0.443:2	0/1:41,46:33:87:0.529:2	0/1:24,16:30:40:0.400:2	0/1:0,65:32:65:1.00:2
chr16	81180995	rs66463064	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,55:32:55:1.00:2	0/1:0,30:32:30:1.00:2	./.	./.	./.	./.	0/1:39,40:32:79:0.506:2	./.	./.	0/1:19,24:33:43:0.558:2	./.
chr16	81181066	rs55991107	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,58:32:58:1.00:2	0/1:0,28:32:28:1.00:2	./.	./.	./.	./.	0/1:48,67:33:115:0.583:2	./.	./.	0/1:29,28:32:57:0.491:2	./.
chr16	81181773	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,4:32:59:0.068:2	./.	./.	./.	./.	./.	./.
chr16	81181783	rs9921748	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:1,69:29:70:0.986:2	0/1:1,23:29:24:0.958:2	./.	./.	./.	./.	0/1:33,30:30:63:0.476:2	./.	./.	0/1:23,27:29:50:0.540:2	./.
chr16	81181821	rs9921812	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,24:32:47:0.511:2	./.	./.	./.	./.
chr16	81181869	rs9921827	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,47:28:47:1.00:2	0/1:2,28:29:30:0.933:2	./.	./.	./.	./.	0/1:14,28:29:42:0.667:2	./.	./.	0/1:27,30:29:57:0.526:2	./.
chr16	81185412	rs34444956	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:1,56:31:57:0.982:2	0/1:0,21:31:21:1.00:2	./.	./.	./.	./.	0/1:61,20:31:81:0.247:2	./.	./.	0/1:61,37:31:98:0.378:2	./.
chr16	81185416	rs8061038	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:32:54:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,109:32:109:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,83:31:83:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,96:33:96:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,127:32:127:1.00:2
chr16	81185419	rs57461213	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:1,53:31:54:0.981:2	0/1:0,21:31:21:1.00:2	./.	./.	./.	./.	0/1:67,21:31:88:0.239:2	./.	./.	0/1:63,37:31:100:0.370:2	./.
chr16	81187602	rs143576454	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,86:32:88:0.989:2
chr16	81187685	rs74030562	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,73:32:141:0.518:2	./.	./.	./.
chr16	81190598	rs9938333	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:2,103:29:105:0.981:2	0/1:0,53:28:53:1.00:2	0/1:9,8:29:17:0.471:2	./.	./.	./.	0/1:99,86:29:185:0.465:2	0/1:8,163:28:171:0.953:2	./.	0/1:73,52:29:125:0.416:2	./.
chr16	81190601	rs1453325	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,105:29:105:1.00:2	0/1:0,51:28:51:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,150:29:150:1.00:2	0/1:0,192:29:192:1.00:2	0/1:0,183:30:183:1.00:2	0/1:0,175:30:176:1.00:2	0/1:0,172:29:172:1.00:2	0/1:0,170:30:170:1.00:2	0/1:2,119:29:121:0.983:2	0/1:0,102:29:103:1.00:2
chr16	81190613	rs1453324	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,21:32:21:1.00:2	0/1:2,147:32:149:0.987:2	0/1:1,190:32:191:0.995:2	./.	0/1:97,91:32:188:0.484:2	0/1:107,78:32:185:0.422:2	0/1:3,161:33:164:0.982:2	0/1:59,73:33:132:0.553:2	0/1:0,104:31:104:1.00:2
chr16	81193321	rs72628271	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:33:11:0.455:2	./.	0/1:43,32:32:75:0.427:2	./.	0/1:1,101:32:102:0.990:2	0/1:37,56:33:93:0.602:2	./.	0/1:26,38:33:64:0.594:2	0/1:0,58:33:58:1.00:2
chr16	81193344	rs143351043	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,30:32:67:0.448:2	0/1:7,15:32:22:0.682:2	./.	./.	./.	./.	./.	./.	0/1:36,33:34:69:0.478:2	./.	./.
chr16	81194382	rs2317117	T	C,A	.	PASS	AC=9,1;AF=0.300,0.033;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0/2:33:78:1.00:2	0/1:31:19:1.00:2	0/1:30:142:0.993:2	0/1:29:173:0.983:2	0/1:29:143:1.00:2	0/1:29:181:0.517:2	0/1:29:167:0.988:2	0/1:29:156:0.455:2	0/1:30:152:1.00:2	0/1:29:145:1.00:2
chr16	81198306	rs10400943	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,23:29:58:0.397:2	./.	0/1:39,26:31:65:0.400:2	./.	./.
chr16	81199520	rs12931217	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,17:28:17:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,5:27:5:1.00:2	0/1:25,7:30:33:0.219:2	0/1:11,12:25:23:0.522:2	0/1:1,28:26:29:0.966:2	0/1:24,5:32:29:0.172:2	0/1:30,33:29:63:0.524:2	0/1:0,12:27:12:1.00:2	0/1:16,8:30:24:0.333:2	./.
chr16	81199538	rs12931227	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,6:28:6:1.00:2	0/1:10,4:27:14:0.286:2	./.
chr16	81199544	rs12925771	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:29:5:1.00:2	0/1:9,3:32:12:0.250:2	./.
chr16	81201620	rs35292101	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,21:32:22:0.955:2	0/1:0,13:31:13:1.00:2	./.	./.	0/1:21,21:30:42:0.500:2	0/1:1,36:30:37:0.973:2	./.	0/1:20,22:32:42:0.524:2	./.	./.	./.
chr16	81201625	rs34504526	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,17:32:20:0.944:2	0/1:0,12:29:13:1.00:2	./.	./.	0/1:19,22:29:41:0.537:2	0/1:1,36:30:37:0.973:2	./.	0/1:18,21:31:39:0.538:2	./.	./.	./.
chr16	81204423	rs11640279	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,51:28:51:1.00:2	0/1:1,23:28:24:0.958:2	0/1:5,5:30:10:0.500:2	./.	0/1:26,31:28:57:0.544:2	0/1:0,39:29:39:1.00:2	./.	0/1:36,25:27:61:0.410:2	./.	./.	./.
chr16	81208515	rs12596941	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:29:4:1.00:2	0/1:10,20:29:30:0.667:2	./.	./.	./.	./.	0/1:16,14:29:30:0.467:2	0/1:22,15:29:37:0.405:2	./.
chr16	81209234	rs935933	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,3:32:14:0.214:2	0/1:21,49:31:70:0.700:2	./.	./.	./.	./.	./.	./.	./.
chr16	81209247	rs1869349	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,4:33:15:0.267:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	81211496	rs9935113	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:30:7:0.571:2	./.	0/1:27,30:31:57:0.526:2	0/1:1,51:29:52:0.981:2	./.	./.	./.	0/1:24,25:31:49:0.510:2	./.
chr16	81211548	rs9934605	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:8,15:30:23:0.652:2	0/1:5,8:31:13:0.615:2	0/1:1,3:30:4:0.750:2	./.	0/1:24,20:28:44:0.455:2	0/1:0,38:30:38:1.00:2	./.	./.	./.	0/1:18,19:30:37:0.514:2	./.
chr16	81213378	rs4889261	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,12:32:24:0.500:2	0/1:10,7:31:17:0.412:2	0/1:7,3:30:10:0.300:2	0/1:0,35:32:35:1.00:2	0/1:27,24:31:51:0.471:2	./.	0/1:0,30:30:30:1.00:2	0/1:25,25:31:50:0.500:2	0/1:0,31:32:31:1.00:2	0/1:11,15:31:26:0.577:2	0/1:0,31:31:31:1.00:2
chr16	81219187	rs13339342	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:31:8:0.375:2	./.	0/1:33,31:31:64:0.484:2	0/1:2,48:30:50:0.960:2	./.	0/1:36,39:31:75:0.520:2	./.	0/1:21,19:31:40:0.475:2	./.
chr16	81219253	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:32:35:0.114:2	./.
chr16	81232275	rs7205673	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:33:43:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,4:30:4:1.00:2	0/1:1,71:32:72:0.986:2	0/1:36,27:32:63:0.429:2	./.	0/1:35,29:33:64:0.453:2	0/1:47,34:32:81:0.420:2	0/1:0,68:33:68:1.00:2	0/1:39,22:33:61:0.361:2	0/1:1,56:32:57:0.982:2
chr16	81232294	rs61734110	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,35:32:62:0.565:2	./.	./.	./.	./.
chr16	81232564	rs7194871	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,133:32:133:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,20:33:20:1.00:2	0/1:3,125:33:129:0.977:2	0/1:70,59:32:129:0.457:2	./.	0/1:65,55:33:120:0.458:2	0/1:69,86:33:155:0.555:2	0/1:0,175:33:175:1.00:2	0/1:74,72:32:146:0.493:2	0/1:2,153:32:155:0.987:2
chr16	81241098	rs11150369	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:30:55:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,7:31:7:1.00:2	0/1:2,61:31:63:0.968:2	0/1:26,17:30:43:0.395:2	./.	0/1:0,59:30:59:1.00:2	0/1:47,32:31:79:0.405:2	0/1:2,79:31:81:0.975:2	0/1:31,34:30:65:0.523:2	0/1:0,64:30:64:1.00:2
chr16	81241100	rs11150370	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,39:30:57:0.684:2	0/1:15,11:31:26:0.423:2	0/1:0,7:30:7:1.00:2	0/1:2,61:30:63:0.968:2	0/1:27,17:31:44:0.386:2	./.	./.	0/1:47,32:30:79:0.405:2	0/1:43,38:31:82:0.469:2	./.	./.
chr16	81241170	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,4:31:60:0.067:2	./.	./.	./.	./.	./.	./.
chr16	81242102	rs6420424	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,10:33:17:0.588:2	0/1:9,4:31:13:0.308:2	./.	0/1:0,30:32:30:1.00:2	0/1:23,14:31:37:0.378:2	./.	./.	0/1:22,29:32:51:0.569:2	0/1:9,18:33:27:0.667:2	./.	./.
chr16	81242151	rs5818326	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,12:31:22:0.545:2	0/1:9,6:29:15:0.400:2	0/1:0,3:30:3:1.00:2	0/1:2,41:33:43:0.953:2	0/1:28,13:32:41:0.317:2	./.	./.	0/1:28,24:32:52:0.462:2	0/1:15,22:32:37:0.595:2	./.	./.
chr16	81242194	rs6564838	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,17:32:17:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,40:32:40:1.00:2	0/1:18,21:31:39:0.538:2	./.	0/1:0,29:31:29:1.00:2	0/1:20,15:32:35:0.429:2	0/1:0,29:32:29:1.00:2	0/1:13,7:32:20:0.350:2	./.
chr16	81242198	rs7499011	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:8,8:32:16:0.500:2	0/1:9,6:31:15:0.400:2	./.	./.	./.	./.	0/1:0,28:31:28:1.00:2	./.	0/1:17,12:33:29:0.414:2	0/1:13,8:33:21:0.381:2	./.
chr16	81248716	rs12933806	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,18:31:38:0.474:2	0/1:19,17:31:36:0.472:2	./.	0/1:3,86:31:89:0.966:2	0/1:46,51:31:97:0.526:2	./.	./.	0/1:53,36:30:89:0.404:2	0/1:61,28:32:89:0.315:2	./.	./.
chr16	81248745	rs8060294	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:31:7:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	81249927	rs7185774	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:18,19:31:37:0.514:2	0/1:15,14:32:29:0.483:2	./.	./.	./.	./.	0/1:1,51:30:52:0.981:2	./.	0/1:17,25:31:42:0.595:2	0/1:15,18:29:33:0.545:2	./.
chr16	81249954	rs7191351	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:14,18:30:32:0.563:2	0/1:16,13:32:29:0.448:2	0/1:0,6:31:6:1.00:2	./.	./.	./.	0/1:0,61:30:61:1.00:2	./.	0/1:22,29:32:51:0.569:2	0/1:22,11:29:33:0.333:2	./.
chr16	81253745	rs9934272	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:30:11:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	81253759	rs9924371	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:42,41:30:83:0.494:2	0/1:29,33:29:62:0.532:2	0/1:0,10:29:10:1.00:2	./.	./.	0/1:61,65:30:126:0.516:2	0/1:2,171:31:173:0.988:2	./.	0/1:72,52:31:125:0.419:2	0/1:56,53:31:109:0.486:2	./.
chr16	81253917	rs9924530	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:45,47:33:92:0.511:2	0/1:25,38:33:63:0.603:2	0/1:0,13:33:13:1.00:2	./.	./.	0/1:75,61:33:136:0.449:2	0/1:1,172:33:173:0.994:2	./.	0/1:102,61:34:163:0.374:2	0/1:57,52:33:109:0.477:2	./.
chr16	81279120	rs28370522	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:28:8:0.500:2	./.	./.	0/1:47,61:30:108:0.565:2	0/1:54,65:30:119:0.546:2	0/1:0,119:30:119:1.00:2	0/1:38,43:31:81:0.531:2	./.	0/1:0,83:29:83:1.00:2
chr16	81295780	rs35683292	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:20,21:33:41:0.512:2	0/1:14,9:30:23:0.391:2	./.	0/1:18,16:33:34:0.471:2	./.	./.	./.	./.	./.	./.	./.
chr16	81301694	rs12934922	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,23:30:48:0.479:2	0/1:16,12:31:28:0.429:2	./.	0/1:25,20:29:45:0.444:2	0/1:0,59:29:59:1.00:2	0/1:0,39:29:39:1.00:2	0/1:22,24:29:46:0.522:2	0/1:0,58:29:58:1.00:2	0/1:0,56:30:56:1.00:2	0/1:22,17:29:39:0.436:2	0/1:1,45:29:46:0.978:2
chr16	81314496	rs7501331	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,17:28:27:0.630:2	./.	./.	0/1:19,18:28:37:0.486:2	./.
chr16	81348762	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:34:42:0.095:2	./.	./.	./.
chr16	81348764	rs77470936	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,17:30:36:0.472:2
chr16	81398635	rs2608555	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,16:30:37:0.432:2	0/1:18,11:31:29:0.379:2	0/1:0,3:30:3:1.00:2	0/1:31,22:31:53:0.415:2	0/1:19,9:30:28:0.321:2	0/1:0,47:31:48:1.00:2	./.	0/1:0,55:31:55:1.00:2	0/1:28,18:33:46:0.391:2	0/1:18,21:31:39:0.538:2	./.
chr16	81399026	rs146576740	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,15:30:19:0.789:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	81399031	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,59:28:120:0.492:2	./.	./.	./.	./.	./.	./.	./.
chr16	81743328	rs68116357	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,26:33:26:1.00:2	0/1:0,18:32:18:1.00:2	./.	0/1:1,74:33:75:0.987:2	0/1:1,65:32:66:0.985:2	0/1:26,35:32:61:0.574:2	0/1:26,30:31:56:0.536:2	./.	0/1:1,64:33:65:0.985:2	0/1:0,62:32:62:1.00:2	0/1:38,25:30:64:0.397:2
chr16	81743340	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,4:32:79:0.051:2	./.	./.	./.	./.	./.	./.
chr16	81819676	rs61749044	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,19:30:42:0.452:2	0/1:17,22:31:39:0.564:2	./.
chr16	81819768	rs1143685	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,11:28:39:0.282:2	0/1:22,9:30:31:0.290:2	./.	0/1:0,62:29:62:1.00:2	0/1:0,81:29:81:1.00:2	0/1:2,56:30:58:0.966:2	0/1:0,62:30:62:1.00:2	0/1:33,51:30:84:0.607:2	0/1:26,25:28:51:0.490:2	0/1:0,68:29:68:1.00:2	0/1:35,22:30:57:0.386:2
chr16	81888152	rs1143686	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,6:32:12:0.500:2	0/1:42,52:32:94:0.553:2	0/1:99,67:32:166:0.404:2	0/1:62,64:32:126:0.508:2	./.	./.	./.	./.	0/1:39,63:32:102:0.618:2
chr16	81892708	rs4888183	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,14:32:36:0.389:2	0/1:9,7:32:16:0.438:2	./.	0/1:0,15:32:15:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,34:31:34:1.00:2	./.	0/1:0,25:31:25:1.00:2	0/1:0,28:32:28:1.00:2	0/1:21,18:32:39:0.462:2	0/1:27,32:32:59:0.542:2
chr16	81904447	rs62046684	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:9,24:29:33:0.727:2	0/1:16,7:28:23:0.304:2	./.	./.	./.	./.	./.	0/1:15,11:29:26:0.423:2	./.	./.	./.
chr16	81914583	rs11865395	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,40:31:89:0.449:2	0/1:15,22:31:37:0.595:2	0/1:0,56:31:56:1.00:2	0/1:26,24:31:50:0.480:2	./.	./.	./.	./.
chr16	81916912	rs11548656	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,37:29:97:0.381:2	./.	0/1:29,26:30:55:0.473:2	./.
chr16	81927327	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,4:25:31:0.129:2
chr16	81929488	rs1143688	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,3:30:14:0.214:2	0/1:73,64:31:137:0.467:2	./.	0/1:81,70:31:151:0.464:2	0/1:94,82:31:176:0.466:2	./.	0/1:63,69:31:132:0.523:2	0/1:63,53:30:116:0.457:2	0/1:57,55:31:112:0.491:2
chr16	81929527	rs13333716	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,162:29:166:0.976:2	./.	./.	./.	./.	./.	./.
chr16	81941319	rs1143689	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,29:32:29:1.00:2	0/1:0,12:32:12:1.00:2	./.	./.	./.	0/1:0,38:32:38:1.00:2	0/1:2,40:33:42:0.952:2	0/1:0,61:32:61:1.00:2	0/1:27,28:33:55:0.509:2	0/1:16,20:33:36:0.556:2	0/1:0,35:33:35:1.00:2
chr16	81942074	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:30:50:0.080:2	./.	./.	./.	./.	./.
chr16	81942175	rs75472618	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,46:32:98:0.469:2	./.	./.	./.	./.	./.
chr16	81954789	rs12446127	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,12:33:26:0.462:2	0/1:8,5:32:13:0.385:2	0/1:0,27:32:27:1.00:2	0/1:13,5:33:18:0.278:2	./.	0/1:7,13:33:20:0.650:2	./.	./.
chr16	81957162	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:29:51:0.078:2
chr16	81971403	rs1071644	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,4:30:14:0.286:2	0/1:0,86:30:86:1.00:2	0/1:44,41:30:85:0.482:2	0/1:36,37:30:73:0.507:2	./.	./.	./.	0/1:41,24:30:65:0.369:2	0/1:30,44:29:74:0.595:2
chr16	82033022	rs11861598	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,23:32:47:0.489:2	0/1:27,24:31:51:0.471:2	./.	./.	./.	./.
chr16	82033454	rs144311554	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,68:31:139:0.489:2
chr16	82033612	rs16956174	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,71:29:147:0.483:2	0/1:73,53:30:126:0.421:2	./.	./.	./.	./.
chr16	82033810	rs11542462	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,10:34:16:0.625:2	./.	./.
chr16	82101785	rs148579309	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,64:31:141:0.454:2	./.	./.	./.	./.	./.
chr16	82182354	rs3751865	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,14:32:26:0.538:2	./.	./.	0/1:98,54:30:152:0.355:2	./.	./.	./.	./.	./.
chr16	82203705	rs2303265	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	0/1:0,6:30:6:1.00:2	./.	./.	./.	./.	./.	0/1:32,4:32:36:0.111:2	0/1:0,2:31:2:1.00:2	0/1:2,6:30:8:0.750:2	0/1:0,6:28:6:1.00:2
chr16	82203711	rs2303264	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,6:30:6:1.00:2	./.	./.	./.	./.	0/1:0,43:32:43:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,2:32:2:1.00:2	0/1:2,6:27:8:0.750:2	0/1:0,5:31:5:1.00:2
chr16	82203742	rs1134847	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,5:33:5:1.00:2	./.	./.	./.	0/1:44,9:34:53:0.170:2	./.	./.	0/1:0,3:28:3:1.00:2	./.	0/1:0,5:31:5:1.00:2
chr16	82203758	rs2303262	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,48:31:48:1.00:2	0/1:0,60:32:60:1.00:2	0/1:2,41:30:43:0.953:2	0/1:0,2:33:2:1.00:2	./.	./.
chr16	82203768	rs2303261	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	0/1:37,8:26:45:0.178:2	./.	./.	./.	./.	./.
chr16	82203786	rs2303260	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:24:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	82203797	rs57899428	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,22:31:22:1.00:2	0/1:2,21:30:23:0.913:2	./.	./.	./.
chr16	83065664	rs6565105	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,63:31:145:0.434:2	./.	0/1:89,47:31:136:0.346:2	0/1:92,67:32:159:0.421:2	0/1:83,97:32:180:0.539:2	./.	0/1:75,46:32:121:0.380:2	0/1:68,59:32:127:0.465:2
chr16	83065794	rs183971768	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,26:28:61:0.426:2	./.	./.	./.	./.
chr16	83636080	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2	./.	./.	./.
chr16	83711887	rs34697339	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:37,25:31:62:0.403:2	0/1:13,22:31:35:0.629:2	./.	0/1:33,36:31:69:0.522:2	./.	./.	./.	0/1:45,40:31:85:0.471:2	./.	./.	./.
chr16	83817019	rs1048612	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:31:52:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,60:30:60:1.00:2	0/1:39,34:30:73:0.466:2	0/1:0,61:29:61:1.00:2	0/1:0,74:30:74:1.00:2	0/1:3,91:30:94:0.968:2	0/1:1,73:30:74:0.986:2	0/1:0,46:30:46:1.00:2	0/1:0,57:30:57:1.00:2
chr16	83842343	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,33:33:67:0.493:2	./.	./.
chr16	83983071	rs4782865	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,19:32:44:0.432:2	0/1:18,12:33:30:0.400:2	0/1:0,11:32:11:1.00:2	0/1:0,72:32:72:1.00:2	0/1:38,39:32:77:0.506:2	0/1:0,76:32:76:1.00:2	0/1:1,71:32:72:0.986:2	0/1:0,46:32:46:1.00:2	0/1:0,62:33:62:1.00:2	0/1:12,27:33:39:0.692:2	0/1:0,84:32:84:1.00:2
chr16	83984776	rs28555129	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,35:32:94:0.372:2	0/1:23,23:30:46:0.500:2	0/1:0,10:31:10:1.00:2	0/1:0,106:32:106:1.00:2	0/1:68,41:31:109:0.376:2	0/1:0,97:32:97:1.00:2	0/1:0,106:31:106:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,83:32:83:1.00:2	0/1:53,46:32:99:0.465:2	0/1:0,71:30:71:1.00:2
chr16	83984844	rs2244899	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,29:33:59:0.492:2	0/1:22,10:32:32:0.313:2	0/1:0,5:32:5:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,33:31:33:1.00:2
chr16	83984850	rs2244898	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,27:29:55:0.491:2	0/1:20,10:28:30:0.333:2	0/1:0,6:30:6:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,45:29:45:1.00:2	0/1:0,54:29:54:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,48:28:48:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,42:28:42:1.00:2	0/1:0,30:28:30:1.00:2
chr16	83991313	rs148139055	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,51:30:100:0.510:2	./.	./.
chr16	83998995	rs150791768	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	./.	./.	./.	./.	./.
chr16	83999033	rs173776	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,5:25:7:0.714:2	./.	./.	./.
chr16	83999261	rs35132222	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,9:30:22:0.409:2	0/1:98,98:29:196:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr16	83999548	rs62640905	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,18:28:46:0.391:2	./.	./.	./.	./.	./.
chr16	84005801	rs2250691	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,26:30:50:0.520:2	./.	./.	./.	./.	./.
chr16	84012104	rs925331	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,63:32:110:0.573:2	./.	./.	0/1:44,36:34:80:0.450:2	./.	0/1:40,25:33:65:0.385:2
chr16	84014482	rs16962369	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,51:31:97:0.526:2	./.	./.	0/1:61,47:32:108:0.435:2	./.	0/1:41,52:32:93:0.559:2
chr16	84028014	rs2292324	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,20:33:31:0.645:2	./.	./.
chr16	84030848	rs7193267	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,42:32:72:0.583:2
chr16	84035446	rs2271298	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,7:29:147:0.048:2	./.	./.	./.	./.
chr16	84035919	rs5012585	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,66:32:128:0.516:2	./.	./.	./.	./.	./.	./.	./.
chr16	84050209	rs77876966	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,12:29:21:0.571:2
chr16	84063151	rs141539835	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,30:32:59:0.508:2
chr16	84067004	rs57576928	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,74:27:138:0.544:2	0/1:50,77:26:127:0.606:2	./.	0/1:61,51:27:112:0.455:2	0/1:52,78:27:131:0.600:2	./.	./.	./.
chr16	84070500	rs1317524	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:31:6:0.500:2	0/1:13,11:32:24:0.458:2	0/1:23,18:31:41:0.439:2	./.	0/1:17,16:31:33:0.485:2	0/1:19,15:32:34:0.441:2	./.	./.	0/1:12,6:32:18:0.333:2
chr16	84075716	rs200455970	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,14:11:82:0.171:2	./.	./.	./.	./.
chr16	84103544	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:34:109:0.037:2	./.
chr16	84108338	rs375404159	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr16	84115393	rs12933523	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,25:28:45:0.556:2	./.	0/1:29,26:28:55:0.473:2	./.	./.	0/1:23,29:30:54:0.558:2	./.	./.
chr16	84115483	rs3743631	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,55:31:55:1.00:2	0/1:0,19:32:19:1.00:2	./.	./.	0/1:40,37:32:77:0.481:2	0/1:18,23:32:41:0.561:2	./.	./.	0/1:28,20:32:48:0.417:2	0/1:23,11:31:34:0.324:2	0/1:28,25:33:53:0.472:2
chr16	84158248	rs4378600	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,61:33:126:0.484:2	./.	0/1:60,51:33:113:0.459:2	0/1:76,55:32:131:0.420:2	0/1:2,104:33:106:0.981:2	0/1:60,55:33:115:0.478:2	./.	./.
chr16	84199551	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,4:28:31:0.129:2	./.	./.	./.	./.	./.
chr16	84203511	rs35504640	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,63:32:173:0.364:2	./.
chr16	84203595	rs36062234	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,18:32:47:0.383:2	./.
chr16	84203612	rs17856705	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,51:32:53:0.962:2	0/1:0,25:32:25:1.00:2	0/1:0,4:33:4:1.00:2	0/1:19,22:31:41:0.537:2	0/1:0,26:32:26:1.00:2	0/1:21,23:32:44:0.523:2	./.	./.	0/1:23,27:32:50:0.540:2	0/1:21,23:31:44:0.523:2	./.
chr16	84203730	rs9972733	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,23:29:50:0.460:2	0/1:32,9:25:41:0.220:2	./.	./.	./.
chr16	84203737	rs149158199	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,22:28:41:0.537:2
chr16	84203939	rs11644164	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,13:32:13:1.00:2	0/1:0,9:32:9:1.00:2	0/1:1,2:31:3:0.667:2	0/1:18,7:31:25:0.280:2	0/1:0,11:31:11:1.00:2	0/1:14,7:30:21:0.333:2	./.	./.	0/1:5,7:31:12:0.583:2	0/1:5,5:33:10:0.500:2	./.
chr16	84208335	rs3826151	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,117:32:118:0.992:2	0/1:0,73:31:73:1.00:2	0/1:6,9:32:15:0.600:2	0/1:75,49:32:124:0.395:2	./.	0/1:74,54:31:128:0.422:2	./.	./.	0/1:70,42:32:113:0.375:2	0/1:75,37:32:112:0.330:2	0/1:85,60:31:145:0.414:2
chr16	84209609	rs34777958	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:16,28:33:44:0.636:2	0/1:11,8:32:19:0.421:2	./.	./.	./.	./.	./.	./.	./.	0/1:9,23:31:32:0.719:2	./.
chr16	84209634	rs2288019	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:33:36:1.00:2	0/1:0,22:32:22:1.00:2	0/1:4,4:33:8:0.500:2	0/1:0,55:33:55:1.00:2	0/1:33,25:32:58:0.431:2	0/1:37,25:34:62:0.403:2	0/1:56,34:33:90:0.378:2	0/1:31,31:33:62:0.500:2	0/1:0,55:34:55:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,51:33:51:1.00:2
chr16	84209738	rs2288020	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,24:31:24:1.00:2	0/1:0,14:30:14:1.00:2	./.	0/1:4,11:30:15:0.733:2	./.	0/1:15,10:29:25:0.400:2	./.	./.	0/1:15,11:31:26:0.423:2	0/1:10,6:28:16:0.375:2	0/1:12,12:28:24:0.500:2
chr16	84209815	rs2288021	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	0/1:56,52:32:108:0.481:2	./.	0/1:58,35:31:93:0.376:2	./.	./.	./.	./.
chr16	84209816	rs2288022	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,36:31:36:1.00:2	0/1:2,16:30:18:0.889:2	./.	0/1:34,31:32:65:0.477:2	./.	0/1:34,24:32:58:0.414:2	./.	./.	0/1:34,19:33:53:0.358:2	0/1:26,20:32:46:0.435:2	0/1:33,20:30:53:0.377:2
chr16	84209864	rs2288023	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:32:39:1.00:2	0/1:2,14:32:16:0.875:2	0/1:2,2:34:5:0.500:2	0/1:38,39:32:77:0.506:2	./.	0/1:34,24:32:58:0.414:2	./.	./.	0/1:35,17:33:52:0.327:2	0/1:30,18:33:48:0.375:2	0/1:31,21:32:52:0.404:2
chr16	84212571	rs1804500	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,14:30:14:1.00:2	0/1:0,5:31:5:1.00:2	./.	0/1:12,8:29:20:0.400:2	./.	0/1:5,10:26:15:0.667:2	./.	./.	0/1:16,12:30:28:0.429:2	0/1:6,8:28:14:0.571:2	0/1:4,6:31:10:0.600:2
chr16	84212710	rs4150176	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,32:31:51:0.627:2	0/1:15,16:32:31:0.516:2
chr16	84212779	rs2230131	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,15:31:29:0.517:2	0/1:6,30:32:36:0.833:2	./.	0/1:9,18:32:28:0.667:2	0/1:12,13:32:25:0.520:2	0/1:7,15:30:22:0.682:2	./.	./.
chr16	84212853	rs4150174	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,12:28:20:0.600:2	0/1:7,11:29:18:0.611:2
chr16	84212928	rs3743642	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,16:31:22:0.727:2	0/1:12,6:30:18:0.333:2	./.	0/1:4,6:32:10:0.600:2	0/1:9,13:31:22:0.591:2	0/1:7,12:30:19:0.632:2	./.	./.
chr16	84213114	rs2230130	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,16:27:16:1.00:2	0/1:0,10:29:10:1.00:2	./.	0/1:10,16:28:26:0.615:2	./.	0/1:7,4:28:11:0.364:2	./.	./.	0/1:2,13:28:15:0.867:2	0/1:12,13:27:26:0.520:2	0/1:14,8:26:22:0.364:2
chr16	84213255	rs145273391	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:33:50:0.080:2	./.	./.	./.	./.
chr16	84213434	rs2230129	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:31:44:1.00:2	0/1:0,34:31:34:1.00:2	0/1:2,4:30:6:0.667:2	0/1:55,32:30:87:0.368:2	./.	0/1:38,34:30:72:0.472:2	./.	./.	0/1:46,32:31:78:0.410:2	0/1:0,44:31:44:1.00:2	0/1:0,37:31:37:1.00:2
chr16	84213652	rs4150168	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	0/1:12,13:32:25:0.520:2	./.	./.	./.
chr16	84213684	rs4150167	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:31:8:0.500:2	./.
chr16	84215390	rs2230127	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,113:30:115:0.983:2	0/1:1,76:29:77:0.987:2	0/1:21,7:31:28:0.250:2	0/1:103,78:29:181:0.431:2	./.	0/1:111,75:30:186:0.403:2	./.	./.	0/1:98,88:31:186:0.473:2	0/1:3,108:29:111:0.973:2	0/1:68,61:29:129:0.473:2
chr16	84215867	rs79432776	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:13,14:32:27:0.519:2	0/1:12,15:32:27:0.556:2	./.	./.	./.	./.	./.	./.	./.	0/1:12,13:30:25:0.520:2	./.
chr16	84215969	rs201410237	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,8:19:31:0.258:2	0/1:33,12:16:45:0.267:2	./.	./.	./.
chr16	84215995	rs199676363	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,15:26:35:0.429:2	./.	./.	./.	./.
chr16	84217062	rs4782591	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:27:29:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,2:27:2:1.00:2	0/1:1,38:27:39:0.974:2	0/1:0,28:25:28:1.00:2	0/1:0,31:28:31:1.00:2	0/1:0,31:26:31:1.00:2	0/1:0,26:25:26:1.00:2	0/1:0,27:25:27:1.00:2	0/1:0,29:26:29:1.00:2	0/1:0,7:26:7:1.00:2
chr16	84218565	rs2230126	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,40:29:67:0.597:2	0/1:41,34:28:75:0.453:2	0/1:18,21:28:39:0.538:2	0/1:28,16:27:44:0.364:2	0/1:32,45:29:77:0.584:2	0/1:37,29:30:66:0.439:2	./.	./.
chr16	84225041	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.
chr16	84225184	rs79224535	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,20:33:42:0.476:2	./.	./.	./.	./.	0/1:17,19:32:36:0.528:2	./.	./.
chr16	84227713	rs78344060	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,28:28:69:0.412:2	./.	./.	./.	./.	0/1:42,49:28:91:0.538:2	./.	./.
chr16	84228770	rs11149631	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,75:28:76:0.987:2	0/1:35,51:29:86:0.593:2	./.	0/1:56,42:29:98:0.429:2	./.	./.	0/1:25,25:29:50:0.500:2
chr16	84228873	rs11865115	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,13:30:13:1.00:2	0/1:10,8:30:18:0.444:2	./.	0/1:4,5:32:9:0.556:2	./.	./.	./.
chr16	84229436	rs62049905	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,6:31:6:1.00:2	0/1:0,5:31:5:1.00:2	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	0/1:1,2:34:3:0.667:2	0/1:1,3:33:4:0.750:2	./.
chr16	84229559	rs2303238	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,19:32:19:1.00:2	0/1:0,5:31:5:1.00:2	./.	0/1:0,8:30:8:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,7:30:7:1.00:2	./.	0/1:1,5:32:6:0.833:2	0/1:0,17:28:17:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,3:32:3:1.00:2
chr16	84229580	rs2303239	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,16:33:16:1.00:2	0/1:0,10:33:10:1.00:2	./.	0/1:0,5:32:5:1.00:2	./.	./.	./.	./.	0/1:0,16:32:16:1.00:2	./.	./.
chr16	84229892	rs141742506	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,25:31:45:0.556:2	./.	./.	./.	./.	0/1:11,16:32:27:0.593:2	./.	./.
chr16	84230347	rs112789102	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,10:31:27:0.370:2
chr16	84230500	rs2303243	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,39:29:41:0.951:2	0/1:46,35:29:81:0.432:2	./.	0/1:61,30:29:91:0.330:2	./.	./.	0/1:29,18:28:47:0.383:2
chr16	84256242	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,59:30:131:0.450:2	./.	./.	./.	./.	./.	./.	./.
chr16	84256410	rs7196482	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,16:32:33:0.485:2	0/1:21,17:32:38:0.447:2	./.	0/1:9,18:32:27:0.667:2	0/1:35,22:31:57:0.386:2	0/1:0,34:32:34:1.00:2	./.	./.
chr16	84256619	rs17736370	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,25:30:50:0.500:2	0/1:19,15:29:34:0.441:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	84270381	rs244811	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,25:32:25:1.00:2	0/1:0,12:30:12:1.00:2	./.	0/1:19,19:31:38:0.500:2	0/1:22,40:32:62:0.645:2	0/1:21,20:31:41:0.488:2	0/1:11,18:31:29:0.621:2	0/1:0,42:31:42:1.00:2	0/1:0,14:33:14:1.00:2	./.	0/1:17,11:31:29:0.393:2
chr16	84270476	rs11646443	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,27:31:39:0.692:2	0/1:8,8:30:16:0.500:2	0/1:1,5:29:6:0.833:2	0/1:18,18:32:36:0.500:2	./.	./.	0/1:6,7:33:13:0.538:2	0/1:14,11:33:25:0.440:2	0/1:0,33:33:33:1.00:2	./.	./.
chr16	84351893	rs200279757	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,16:11:104:0.155:2	./.	0/1:71,13:12:85:0.155:2	./.	./.	./.	./.	0/1:82,11:16:93:0.118:2
chr16	84360533	rs12933084	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,22:33:54:0.407:2	0/1:34,18:32:52:0.346:2	0/1:0,2:35:2:1.00:2	0/1:57,36:33:93:0.387:2	./.	0/1:0,76:32:76:1.00:2	./.	./.	0/1:1,91:34:92:0.989:2	0/1:30,23:32:53:0.434:2	./.
chr16	84402275	rs62048787	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,10:27:23:0.435:2	0/1:12,4:30:16:0.250:2	./.	0/1:22,9:28:31:0.290:2	0/1:16,12:29:28:0.429:2	0/1:15,16:28:31:0.516:2	0/1:15,12:28:27:0.444:2	0/1:8,16:28:24:0.667:2	./.	0/1:4,7:32:11:0.636:2	0/1:18,4:28:22:0.182:2
chr16	84438759	rs201569578	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:31:180:0.022:2	./.	./.
chr16	84442099	rs372072267	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,3:30:18:0.167:2	./.	./.	./.	./.	./.	./.
chr16	84444349	rs247818	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:33:37:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,37:33:37:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,43:34:43:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,26:33:26:1.00:2
chr16	84449161	rs3743651	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,30:32:65:0.462:2
chr16	84456829	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.	./.
chr16	84459424	rs1891	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,62:29:126:0.492:2	./.	./.	./.	./.	./.	./.
chr16	84474484	rs2303853	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,34:32:83:0.410:2	./.	0/1:78,52:32:130:0.400:2	0/1:67,60:33:127:0.472:2	./.	./.
chr16	84476200	rs247897	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:31:11:1.00:2	0/1:31,14:31:45:0.311:2	0/1:2,38:31:40:0.950:2	./.	0/1:27,25:29:52:0.481:2	0/1:27,20:30:47:0.426:2	./.	0/1:0,58:31:58:1.00:2	./.
chr16	84485573	rs247885	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:30:90:1.00:2	0/1:0,61:30:61:1.00:2	0/1:0,13:28:13:1.00:2	0/1:0,104:29:104:1.00:2	0/1:0,128:29:128:1.00:2	0/1:0,115:29:115:1.00:2	0/1:0,130:28:130:1.00:2	0/1:0,117:29:117:1.00:2	0/1:0,116:30:116:1.00:2	0/1:0,79:30:79:1.00:2	0/1:0,121:29:121:1.00:2
chr16	84485677	rs62640926	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,42:30:121:0.347:2	./.	0/1:84,50:32:134:0.373:2	0/1:62,56:32:118:0.475:2	./.	./.
chr16	84486903	rs114737121	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,30:30:84:0.361:2	./.	0/1:62,41:31:103:0.398:2	0/1:47,45:32:92:0.489:2	./.	./.
chr16	84488427	rs192290863	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,70:31:129:0.543:2	./.	./.	./.	./.
chr16	84494275	rs2241640	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,32:31:79:0.405:2	./.	./.	0/1:38,49:32:87:0.563:2	0/1:40,55:31:95:0.579:2	./.	0/1:0,50:33:50:1.00:2	0/1:46,43:31:89:0.483:2
chr16	84494315	rs62050917	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,40:32:78:0.513:2
chr16	84495404	rs200224910	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,16:12:94:0.170:2	0/1:102,35:12:137:0.255:2	0/1:94,28:11:122:0.230:2	0/1:115,30:11:145:0.207:2	0/1:109,22:10:131:0.168:2	0/1:100,14:14:114:0.123:2	0/1:69,13:16:82:0.159:2	0/1:98,17:13:116:0.148:2
chr16	84516309	rs433293	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,144:31:144:1.00:2	0/1:3,76:31:79:0.962:2	0/1:0,21:29:21:1.00:2	0/1:87,84:30:171:0.491:2	0/1:96,83:30:179:0.464:2	0/1:2,125:30:127:0.984:2	./.	./.	./.	0/1:69,59:31:128:0.461:2	./.
chr16	84520325	rs431389	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,74:31:76:0.974:2	0/1:1,55:32:56:0.982:2	0/1:0,17:32:17:1.00:2	0/1:90,51:32:141:0.362:2	0/1:124,51:32:175:0.291:2	0/1:0,127:32:127:1.00:2	./.	./.	./.	0/1:68,67:32:135:0.496:2	./.
chr16	84520396	rs422145	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:30:76:1.00:2	0/1:0,61:29:61:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,112:30:112:1.00:2	0/1:0,106:30:106:1.00:2	0/1:1,109:29:110:0.991:2	0/1:0,108:30:108:1.00:2	0/1:2,127:29:129:0.984:2	0/1:0,98:31:98:1.00:2	0/1:1,88:30:89:0.989:2	0/1:0,104:30:104:1.00:2
chr16	84520537	rs431818	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:28:73:1.00:2	0/1:0,39:28:39:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,101:29:101:1.00:2	0/1:0,78:28:78:1.00:2	0/1:0,86:28:86:1.00:2	0/1:59,54:29:113:0.478:2	0/1:0,100:29:100:1.00:2	0/1:0,86:30:86:1.00:2	0/1:0,82:28:82:1.00:2	0/1:0,74:28:74:1.00:2
chr16	84522897	rs436278	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,34:32:36:0.944:2	0/1:0,25:32:25:1.00:2	0/1:0,3:31:3:1.00:2	0/1:26,20:31:46:0.435:2	0/1:27,33:31:60:0.550:2	0/1:0,44:31:44:1.00:2	./.	./.	./.	0/1:21,20:33:41:0.488:2	./.
chr16	84690608	rs74338298	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,53:32:118:0.449:2	./.	./.	./.	./.	./.	./.
chr16	84691044	rs3751762	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:1,3:31:4:0.750:2	./.	0/1:5,8:33:13:0.615:2	./.	0/1:3,7:30:10:0.700:2	./.	0/1:8,9:31:17:0.529:2	0/1:6,4:32:10:0.400:2	./.	0/1:6,3:32:9:0.333:2
chr16	84691433	rs72797514	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,20:29:35:0.571:2	./.	./.	./.	./.	./.
chr16	84695280	rs17755815	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,36:33:75:0.480:2	./.	./.	0/1:48,15:31:63:0.238:2	./.	./.	0/1:33,23:32:56:0.411:2	./.
chr16	84695490	rs12928590	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,10:31:19:0.526:2	./.	./.	0/1:1,4:32:5:0.800:2	./.	./.	0/1:0,8:31:8:1.00:2	./.
chr16	84778271	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:33:38:0.079:2	./.
chr16	84778302	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,3:34:42:0.071:2	./.
chr16	84778685	rs1862792	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,3:29:12:0.250:2	0/1:33,27:29:60:0.450:2	0/1:33,62:30:95:0.653:2	./.	0/1:37,75:30:113:0.670:2	0/1:73,59:28:132:0.447:2	0/1:1,78:29:79:0.987:2	./.	0/1:0,90:29:90:1.00:2
chr16	84778690	rs1812062	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,8:32:13:0.615:2	0/1:32,28:31:60:0.467:2	0/1:69,26:30:95:0.274:2	./.	0/1:86,31:29:117:0.265:2	./.	./.	0/1:0,33:30:34:1.00:2	./.
chr16	84778694	rs2326391	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,7:31:12:0.583:2	0/1:30,24:32:54:0.444:2	0/1:68,23:31:91:0.253:2	./.	0/1:87,31:31:118:0.263:2	./.	./.	0/1:0,32:32:32:1.00:2	./.
chr16	84778697	rs1812061	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,7:31:12:0.583:2	0/1:32,24:32:56:0.429:2	0/1:67,23:30:90:0.256:2	./.	0/1:86,31:31:119:0.265:2	./.	./.	0/1:0,32:32:32:1.00:2	./.
chr16	84778762	rs4553618	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,26:31:47:0.553:2	0/1:17,12:31:29:0.414:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	84778766	rs139338093	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,11:32:51:0.220:2	./.	./.	./.	./.
chr16	84779185	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,5:23:70:0.072:2
chr16	84779219	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:43,3:32:46:0.065:2	./.	./.	./.	0/1:75,5:30:80:0.063:2	./.	./.	./.	./.	./.
chr16	84779248	rs7185949	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,26:31:50:0.520:2	0/1:18,18:32:36:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	84793809	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:32:114:0.035:2	./.	./.	./.
chr16	84796603	rs12932018	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,50:33:52:0.962:2	0/1:0,23:33:23:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	84796686	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,4:31:63:0.063:2	./.	./.	./.	./.	./.	./.
chr16	84801821	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,4:31:74:0.054:2	./.	./.	./.	./.	./.	./.
chr16	84801883	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,5:33:134:0.037:2	./.	./.	./.
chr16	84801956	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,6:30:115:0.052:2	./.	./.	0/1:102,5:30:107:0.047:2	./.	./.	./.
chr16	84808824	rs774298	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,45:32:45:1.00:2	0/1:0,30:31:30:1.00:2	./.	0/1:21,22:32:44:0.512:2	0/1:14,23:32:37:0.622:2	0/1:0,40:32:40:1.00:2	./.	0/1:7,12:30:19:0.632:2	./.	0/1:20,14:32:34:0.412:2	0/1:0,58:32:58:1.00:2
chr16	84812532	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:169,6:29:175:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr16	84812546	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:167,6:33:173:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr16	84879464	rs12051468	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,19:30:42:0.452:2	0/1:24,12:29:36:0.333:2	0/1:0,9:30:9:1.00:2	0/1:0,73:29:73:1.00:2	0/1:1,63:30:64:0.984:2	0/1:0,64:29:64:1.00:2	0/1:2,83:30:85:0.976:2	./.	./.	./.	0/1:24,10:30:34:0.294:2
chr16	84883063	rs138500867	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,53:32:111:0.477:2	./.	./.	./.	./.	./.	./.
chr16	84883102	rs8061351	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,26:31:58:0.448:2	0/1:17,11:31:28:0.393:2	./.	0/1:42,20:29:62:0.323:2	0/1:0,55:29:55:1.00:2	0/1:2,82:29:84:0.976:2	0/1:0,76:30:76:1.00:2	0/1:52,41:30:93:0.441:2	0/1:0,72:31:72:1.00:2	0/1:37,26:31:63:0.413:2	./.
chr16	84902483	rs72799568	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,69:32:144:0.479:2
chr16	84906098	rs721005	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,105:32:105:1.00:2	./.	0/1:90,104:33:194:0.536:2	0/1:2,182:32:184:0.989:2	0/1:3,180:33:184:0.984:2	./.	./.	0/1:102,88:34:191:0.463:2	./.	./.
chr16	84907503	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,6:32:8:0.750:2	./.	./.	0/1:4,3:29:7:0.429:2	./.	./.
chr16	84922859	rs767050	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,59:33:59:1.00:2	0/1:0,26:32:26:1.00:2	./.	./.	0/1:42,37:32:79:0.468:2	0/1:0,73:32:73:1.00:2	0/1:39,57:33:96:0.594:2	./.	0/1:37,30:34:67:0.448:2	./.	./.
chr16	84940172	rs3803630	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,9:30:23:0.391:2	0/1:3,8:31:11:0.727:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	85009970	rs7195377	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,3:28:17:0.176:2	0/1:12,7:28:19:0.368:2	0/1:0,3:30:3:1.00:2	0/1:12,11:28:23:0.478:2	0/1:0,14:30:14:1.00:2	0/1:12,13:28:25:0.520:2	0/1:9,5:29:14:0.357:2	0/1:0,13:27:13:1.00:2	./.	0/1:0,29:30:29:1.00:2	0/1:11,10:29:21:0.476:2
chr16	85015484	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	85015541	rs16975086	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,15:32:21:0.714:2	./.	./.	./.	./.	0/1:73,73:32:146:0.500:2	./.	./.	0/1:73,106:33:180:0.592:2
chr16	85100976	rs4783121	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,8:31:17:0.471:2	0/1:3,4:31:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	85112002	rs2291967	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,9:32:27:0.333:2	0/1:62,52:33:114:0.456:2	0/1:1,142:32:144:0.993:2	./.	0/1:109,70:33:179:0.391:2	0/1:2,177:32:179:0.989:2	0/1:101,76:33:177:0.429:2	0/1:56,51:32:107:0.477:2	0/1:90,36:32:126:0.286:2
chr16	85112068	rs2291966	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:33:6:0.667:2	./.	./.	./.	./.	./.	0/1:19,20:33:39:0.513:2	./.	./.
chr16	85139003	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:30:56:0.071:2	./.	./.	./.	./.	./.
chr16	85141292	rs17200798	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,47:28:96:0.490:2
chr16	85141494	rs139476885	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,74:31:191:0.387:2
chr16	85141661	rs17200833	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,20:31:46:0.435:2
chr16	85145977	rs9931038	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,9:27:22:0.409:2	0/1:6,5:26:11:0.455:2	./.	0/1:10,6:27:16:0.375:2	0/1:13,21:31:34:0.618:2	./.	0/1:19,15:30:34:0.441:2	0/1:0,22:27:22:1.00:2	./.	0/1:15,4:30:19:0.211:2	0/1:5,17:27:22:0.773:2
chr16	85687992	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,12:15:160:0.075:2	./.	./.	./.	0/1:158,16:16:174:0.092:2	0/1:145,17:13:164:0.105:2	./.	./.
chr16	85688481	rs147629403	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,37:27:91:0.407:2	./.	./.	./.	./.	./.	./.	./.
chr16	85689374	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,6:30:35:0.171:2	./.	./.
chr16	85690006	rs111733333	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:34:4:0.500:2
chr16	85690195	rs371328519	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	85690235	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	./.
chr16	85696618	rs16975770	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,12:29:21:0.571:2
chr16	85706047	rs9940601	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,60:30:85:0.706:2	0/1:34,19:28:53:0.358:2	0/1:0,11:29:11:1.00:2	0/1:36,45:29:81:0.556:2	./.	0/1:50,43:30:93:0.462:2	0/1:3,77:30:80:0.963:2	./.	0/1:59,41:30:100:0.410:2	0/1:47,39:30:86:0.453:2	0/1:68,49:30:117:0.419:2
chr16	85711860	rs1053328	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,80:31:81:0.988:2	0/1:0,42:31:42:1.00:2	./.	./.	0/1:46,43:30:89:0.483:2	0/1:2,105:30:107:0.981:2	./.	0/1:79,54:31:133:0.406:2	0/1:79,53:32:132:0.402:2	0/1:62,42:30:104:0.404:2	0/1:0,88:31:88:1.00:2
chr16	85834818	rs11557187	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,46:31:97:0.474:2	./.	./.	./.	./.
chr16	85838653	rs2599091	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:32:68:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,68:31:68:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,77:31:77:1.00:2	0/1:0,76:33:76:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,87:32:87:1.00:2
chr16	85942643	rs79518337	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:45,7:24:52:0.135:2	./.	./.	0/1:52,15:19:67:0.224:2	./.	./.	./.	./.	./.	0/1:37,9:18:46:0.196:2	0/1:63,10:20:73:0.137:2
chr16	85945231	rs8052064	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,43:31:88:0.489:2	./.
chr16	85945249	rs16939945	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:30,23:32:53:0.434:2	0/1:11,15:32:26:0.577:2	./.	./.	0/1:41,31:31:72:0.431:2	./.	./.	./.	./.	./.	./.
chr16	86544837	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.
chr16	86565826	rs3751803	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,33:28:33:1.00:2	0/1:0,20:28:20:1.00:2	./.	0/1:0,24:28:24:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,51:28:51:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,24:28:24:1.00:2	0/1:0,20:26:20:1.00:2
chr16	86565882	rs3751802	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:26,16:31:42:0.381:2	0/1:14,5:32:19:0.263:2	./.	./.	0/1:26,11:32:37:0.297:2	./.	./.	./.	./.	./.	./.
chr16	86566039	rs3751801	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,15:32:33:0.455:2	./.	0/1:24,9:31:33:0.273:2	0/1:12,9:32:21:0.429:2	./.	./.
chr16	86566042	rs3751800	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,15:33:31:0.484:2	./.	0/1:24,9:31:33:0.273:2	0/1:12,8:33:20:0.400:2	./.	./.
chr16	86575737	rs3829533	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,29:30:66:0.439:2	./.	./.	0/1:32,37:31:69:0.536:2	./.	./.
chr16	86585743	rs34005514	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,35:33:76:0.461:2	./.	./.	./.	./.
chr16	86602513	rs142773766	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,11:32:79:0.139:2	./.
chr16	86602707	rs1035550	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,7:31:7:1.00:2	./.	0/1:2,30:32:32:0.938:2	0/1:0,31:32:31:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,23:32:23:1.00:2	0/1:2,39:32:41:0.951:2	0/1:0,16:32:16:1.00:2	0/1:0,26:31:26:1.00:2	0/1:1,26:30:27:0.963:2
chr16	86603266	rs80284611	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,13:27:38:0.342:2	./.	./.	./.	./.
chr16	86613143	rs62051072	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,7:29:14:0.500:2	./.	./.	./.	./.	./.	./.
chr16	86614583	rs2288016	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	0/1:7,10:30:17:0.588:2	./.
chr16	86614599	rs7185593	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,16:30:24:0.667:2	./.	./.	./.	./.	./.	./.
chr16	86615269	rs4843173	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,46:32:111:0.414:2	./.	./.	./.	./.	./.
chr16	87367668	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.
chr16	87426028	rs8043569	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.
chr16	87436663	rs200708875	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:32:179:0.022:2
chr16	87445140	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,11:31:39:0.282:2	./.	./.	./.	./.
chr16	87445363	rs1050846	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:16,14:31:30:0.467:2	0/1:11,4:32:15:0.267:2	./.	./.	0/1:18,13:31:31:0.419:2	./.	0/1:0,13:31:13:1.00:2	0/1:16,14:31:30:0.467:2	./.	0/1:8,11:31:19:0.579:2	0/1:8,13:30:21:0.619:2
chr16	87445816	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:30:57:0.070:2	./.	./.	./.	./.
chr16	87445839	rs3748400	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:31:45:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,67:31:67:1.00:2	0/1:24,22:30:46:0.478:2	./.	0/1:3,40:31:43:0.930:2	0/1:0,44:31:44:1.00:2	0/1:26,25:31:51:0.490:2	0/1:38,35:31:73:0.479:2	0/1:0,58:31:58:1.00:2
chr16	87446053	rs2042395	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,14:31:14:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,3:24:3:1.00:2	0/1:0,37:30:37:1.00:2	0/1:5,10:30:15:0.667:2	./.	0/1:0,17:31:17:1.00:2	0/1:1,21:32:22:0.955:2	0/1:4,15:31:19:0.789:2	0/1:14,18:33:32:0.563:2	0/1:0,21:32:21:1.00:2
chr16	87446368	rs2241615	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,78:32:162:0.481:2	0/1:81,72:32:153:0.471:2	./.	./.	./.	./.	./.
chr16	87446399	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:31:150:0.027:2	./.	./.	./.
chr16	87451273	rs56283442	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:32:10:0.300:2	./.	./.	./.	./.	./.
chr16	87454310	rs78839939	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,47:32:94:0.500:2	./.	./.	./.	0/1:48,35:31:83:0.422:2	./.
chr16	87677887	rs149647215	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,46:32:75:0.613:2	./.	./.	./.	./.	./.
chr16	87678144	rs918368	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,9:30:24:0.375:2	0/1:2,10:31:12:0.833:2	./.	0/1:0,42:30:42:1.00:2	0/1:0,44:30:44:1.00:2	0/1:38,20:30:58:0.345:2	0/1:2,54:30:56:0.964:2	0/1:0,64:30:64:1.00:2	0/1:40,24:32:64:0.375:2	0/1:35,22:30:57:0.386:2	0/1:20,17:29:37:0.459:2
chr16	87678165	rs3751725	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,18:32:50:0.360:2	0/1:20,8:30:28:0.286:2	./.	./.	./.	./.
chr16	87678249	rs9934222	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:31:8:0.500:2	./.	0/1:3,4:31:7:0.571:2	0/1:6,5:32:11:0.455:2	0/1:2,2:34:4:0.500:2
chr16	87678402	rs35304352	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,6:32:11:0.545:2	./.	./.	./.
chr16	87678441	rs8051448	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:7,8:32:15:0.533:2	0/1:10,11:31:21:0.524:2	./.	./.	./.	./.	0/1:9,8:31:17:0.471:2	./.	./.	0/1:4,4:32:8:0.500:2	./.
chr16	87678576	rs34975147	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	87723838	rs34767155	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,20:30:34:0.588:2	0/1:16,10:30:26:0.385:2	./.	0/1:38,36:32:74:0.486:2	0/1:53,51:31:104:0.490:2	./.	0/1:125,5:27:130:0.038:2	./.	./.	0/1:30,31:31:61:0.508:2	0/1:34,41:32:75:0.547:2
chr16	87782325	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,5:31:60:0.083:2	./.	./.	./.	./.	./.	./.
chr16	87782396	rs34779002	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:10,12:32:22:0.545:2	0/1:4,5:31:9:0.556:2	./.	./.	0/1:19,14:29:33:0.424:2	./.	./.	./.	./.	./.	0/1:23,21:31:44:0.477:2
chr16	87788833	rs17772510	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,77:29:187:0.412:2	./.	./.	./.	./.	./.	0/1:86,72:29:158:0.456:2	./.
chr16	87788836	rs17699859	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:48,40:31:88:0.455:2	0/1:37,37:31:74:0.500:2	./.	./.	0/1:62,44:29:106:0.415:2	./.	./.	./.	./.	./.	0/1:86,103:31:189:0.545:2
chr16	87788864	rs2303771	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,79:31:81:0.975:2	0/1:0,70:32:70:1.00:2	./.	0/1:81,77:31:158:0.487:2	0/1:0,90:31:90:1.00:2	./.	./.	0/1:104,64:32:168:0.381:2	0/1:91,79:32:170:0.465:2	0/1:65,65:32:130:0.500:2	0/1:1,161:32:162:0.994:2
chr16	87795580	rs2303772	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:27,27:32:54:0.500:2	0/1:21,12:32:33:0.364:2	./.	./.	0/1:52,34:30:86:0.395:2	./.	0/1:89,4:31:93:0.043:2	./.	./.	./.	0/1:32,27:31:59:0.458:2
chr16	87874756	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:34:103:0.039:2	./.	./.
chr16	87902907	rs148183733	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,14:31:24:0.583:2	./.	./.	./.	./.
chr16	87921846	rs72816311	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:32:10:0.400:2	0/1:0,130:32:130:1.00:2	./.	./.	0/1:72,76:33:148:0.514:2	./.	./.	0/1:1,111:32:112:0.991:2	./.
chr16	87925473	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,7:15:42:0.167:2	./.
chr16	87938398	rs7186698	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,14:31:26:0.538:2	0/1:93,100:32:193:0.518:2	./.	./.	0/1:4,180:32:184:0.978:2	./.	./.	0/1:94,95:33:189:0.503:2	0/1:90,92:32:182:0.505:2
chr16	88017809	rs3815820	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,56:30:117:0.479:2	0/1:32,28:31:61:0.467:2	0/1:0,21:30:21:1.00:2	0/1:1,83:30:84:0.988:2	0/1:40,31:29:71:0.437:2	./.	0/1:58,35:31:93:0.376:2	0/1:62,58:31:120:0.483:2	0/1:0,89:31:89:1.00:2	0/1:42,41:30:83:0.494:2	0/1:94,54:31:148:0.365:2
chr16	88052146	rs17850504	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:50,26:32:76:0.342:2	0/1:14,30:33:44:0.682:2	./.	./.	0/1:76,63:32:139:0.453:2	./.	./.	./.	./.	./.	0/1:19,33:31:52:0.635:2
chr16	88052161	rs7499814	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:30:79:1.00:2	0/1:0,41:30:41:1.00:2	0/1:5,3:29:8:0.375:2	0/1:53,54:29:107:0.505:2	0/1:81,69:30:150:0.460:2	0/1:1,112:29:113:0.991:2	0/1:0,95:30:96:1.00:2	0/1:0,117:29:117:1.00:2	0/1:36,48:30:84:0.571:2	0/1:43,27:29:70:0.386:2	0/1:19,35:29:54:0.648:2
chr16	88061150	rs74740586	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,70:32:125:0.560:2	0/1:48,56:31:104:0.538:2	0/1:16,11:32:27:0.407:2	0/1:64,56:31:120:0.467:2	0/1:56,62:31:118:0.525:2	./.	0/1:66,44:31:110:0.400:2	./.	0/1:60,75:32:135:0.556:2	0/1:0,146:32:146:1.00:2	0/1:38,48:31:86:0.558:2
chr16	88066717	rs74992447	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,46:30:117:0.393:2	./.	0/1:76,68:29:144:0.472:2	./.	./.	./.
chr16	88105725	rs8050209	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,6:33:6:1.00:2	./.	0/1:2,2:33:4:0.500:2	./.	./.	0/1:3,8:33:11:0.727:2	0/1:0,6:30:6:1.00:2	0/1:0,6:32:6:1.00:2	0/1:4,4:30:8:0.500:2	./.	./.
chr16	88494603	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,9:31:18:0.500:2	./.	./.	./.	./.
chr16	88494604	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,9:31:18:0.500:2	./.	./.	./.	./.
chr16	88494628	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,7:14:30:0.233:2	./.	./.
chr16	88494947	rs11648572	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:33:22:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,40:34:40:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,43:33:43:1.00:2	0/1:2,23:34:25:0.920:2	0/1:0,48:33:48:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,17:34:17:1.00:2
chr16	88494976	rs11640794	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,27:32:27:1.00:2	0/1:0,19:31:19:1.00:2	./.	0/1:0,39:33:39:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,37:34:37:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,14:33:14:1.00:2
chr16	88495407	rs7199961	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,9:31:9:1.00:2	0/1:0,3:28:3:1.00:2	./.	0/1:0,7:32:7:1.00:2	0/1:0,6:27:6:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,8:28:8:1.00:2	0/1:0,4:22:4:1.00:2	0/1:0,3:32:3:1.00:2
chr16	88495575	rs181785233	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,38:29:61:0.623:2	./.	./.	./.	./.	./.
chr16	88495654	rs12927001	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,15:28:15:1.00:2	0/1:1,6:28:7:0.857:2	./.	0/1:0,9:25:9:1.00:2	0/1:1,8:31:9:0.889:2	0/1:0,8:29:8:1.00:2	./.	0/1:0,7:29:7:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,3:26:3:1.00:2
chr16	88496008	rs12918876	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,14:33:14:1.00:2	0/1:0,6:30:6:1.00:2	./.	0/1:14,5:29:19:0.263:2	0/1:0,10:32:10:1.00:2	0/1:4,7:33:11:0.636:2	0/1:0,6:33:6:1.00:2	0/1:9,15:31:24:0.625:2	0/1:1,16:32:17:0.941:2	0/1:0,8:33:8:1.00:2	0/1:5,7:34:12:0.583:2
chr16	88497400	rs9938800	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,2:32:2:1.00:2	./.	0/1:0,3:30:3:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,4:31:4:1.00:2	./.	0/1:0,3:32:3:1.00:2	0/1:0,5:33:5:1.00:2	./.	0/1:0,2:31:2:1.00:2
chr16	88497446	rs7197071	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,4:26:4:1.00:2	0/1:0,4:27:4:1.00:2	./.	0/1:0,5:27:5:1.00:2	0/1:0,5:27:5:1.00:2	0/1:2,4:27:6:0.667:2	0/1:0,4:25:4:1.00:2	0/1:0,7:25:7:1.00:2	0/1:0,6:28:6:1.00:2	./.	0/1:0,6:25:6:1.00:2
chr16	88498221	rs4782300	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,22:32:22:1.00:2	0/1:0,10:32:10:1.00:2	./.	0/1:0,25:31:25:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,28:30:28:1.00:2	0/1:2,26:30:28:0.929:2	0/1:0,27:32:27:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,13:32:13:1.00:2
chr16	88498297	rs12445417	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:27:27:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,9:25:9:1.00:2	0/1:0,41:29:41:1.00:2	0/1:0,75:28:75:1.00:2	0/1:0,50:28:50:1.00:2	0/1:1,54:29:55:0.982:2	0/1:0,52:28:52:1.00:2	0/1:0,58:29:58:1.00:2	0/1:0,29:28:29:1.00:2	0/1:0,33:29:33:1.00:2
chr16	88499539	rs9931465	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:29:37:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,5:27:5:1.00:2	0/1:0,43:28:43:1.00:2	0/1:0,26:28:26:1.00:2	0/1:0,40:30:40:1.00:2	0/1:0,35:28:35:1.00:2	0/1:0,41:29:41:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,37:29:37:1.00:2	0/1:0,39:28:39:1.00:2
chr16	88500348	rs13334190	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,31:32:48:0.646:2	./.	./.
chr16	88500430	rs12919507	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,8:31:29:0.276:2	./.	./.	./.	./.
chr16	88500442	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:31:51:0.078:2	./.	./.	./.	./.	./.
chr16	88501034	rs12598474	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,10:29:23:0.435:2	0/1:9,6:30:15:0.400:2	0/1:0,4:30:4:1.00:2	0/1:14,15:29:29:0.517:2	./.	./.	0/1:13,4:31:17:0.235:2	0/1:12,9:29:21:0.429:2	./.	0/1:10,11:29:21:0.524:2	0/1:6,6:29:12:0.500:2
chr16	88501386	rs141218390	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	./.	./.	./.
chr16	88501971	rs3812956	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:8,9:32:17:0.529:2	0/1:2,8:32:10:0.800:2	0/1:0,2:32:2:1.00:2	0/1:20,16:32:36:0.444:2	./.	./.	./.	0/1:17,14:32:31:0.452:2	./.	0/1:13,6:30:19:0.316:2	0/1:7,11:33:18:0.611:2
chr16	88502208	rs3812954	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,9:30:23:0.391:2	./.	./.	./.	0/1:8,8:31:16:0.500:2	./.	./.
chr16	88502482	rs3812953	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,27:32:49:0.551:2	0/1:12,15:29:27:0.556:2	0/1:0,55:31:55:1.00:2	./.	0/1:21,18:31:39:0.462:2	0/1:0,43:30:43:1.00:2	0/1:17,11:31:28:0.393:2	0/1:28,25:31:53:0.472:2
chr16	88502504	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,12:32:27:0.444:2	0/1:13,11:32:24:0.458:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	88502505	rs1983014	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:31:27:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,42:30:43:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,39:30:39:1.00:2
chr16	88504850	rs1105066	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,28:31:28:1.00:2	0/1:0,20:33:20:1.00:2	./.	0/1:0,21:32:21:1.00:2	./.	./.	0/1:0,14:31:14:1.00:2	0/1:16,11:32:27:0.407:2	./.	0/1:17,13:31:30:0.433:2	0/1:8,8:32:16:0.500:2
chr16	88504868	rs904783	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:29:25:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,2:28:2:1.00:2	0/1:0,24:27:24:1.00:2	0/1:0,15:27:16:1.00:2	0/1:0,20:29:21:1.00:2	0/1:0,9:24:9:1.00:2	0/1:0,16:30:17:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,24:25:24:1.00:2	0/1:0,9:26:9:1.00:2
chr16	88505635	rs4782301	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:28:27:1.00:2	0/1:0,24:27:24:1.00:2	0/1:3,4:31:7:0.571:2	0/1:17,13:29:30:0.433:2	0/1:0,18:28:18:1.00:2	0/1:0,36:28:36:1.00:2	0/1:0,22:27:22:1.00:2	0/1:0,23:28:23:1.00:2	0/1:0,30:29:30:1.00:2	./.	0/1:0,14:25:14:1.00:2
chr16	88505734	rs4782362	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:33:56:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,32:32:32:1.00:2	0/1:2,40:32:42:0.952:2	0/1:0,58:33:58:1.00:2	0/1:0,43:33:43:1.00:2	0/1:0,56:33:56:1.00:2
chr16	88552370	rs3751673	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,51:29:53:0.962:2	./.	./.	0/1:35,21:32:56:0.375:2	./.	0/1:21,18:29:39:0.462:2
chr16	88594567	rs35121729	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:11,14:31:25:0.560:2	0/1:5,3:31:8:0.375:2	./.	./.	./.	./.	0/1:3,6:30:9:0.667:2	./.	./.	./.	./.
chr16	88598489	rs45611335	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,10:31:16:0.625:2	0/1:8,9:31:17:0.529:2	./.	./.	./.	./.	./.	0/1:3,3:31:6:0.500:2
chr16	88599023	rs56041036	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:37,23:31:60:0.383:2	0/1:30,13:32:43:0.302:2	0/1:15,7:33:22:0.318:2	./.	./.	./.	0/1:58,24:32:82:0.293:2	./.	./.	./.	./.
chr16	88600079	rs13335396	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,7:25:7:1.00:2	0/1:0,6:26:6:1.00:2	0/1:0,3:27:3:1.00:2	0/1:0,12:28:12:1.00:2	0/1:0,17:25:17:1.00:2	0/1:0,13:28:13:1.00:2	0/1:0,9:24:9:1.00:2	0/1:0,22:26:22:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,9:28:9:1.00:2	0/1:0,12:26:12:1.00:2
chr16	88601360	rs72807438	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,24:32:46:0.522:2	./.	./.
chr16	88620195	rs2879897	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,24:31:64:0.375:2	0/1:1,79:32:80:0.988:2	0/1:50,29:32:79:0.367:2	0/1:42,59:33:101:0.584:2	0/1:0,56:33:56:1.00:2	0/1:30,36:33:66:0.545:2	0/1:1,96:33:97:0.990:2
chr16	88620312	rs2340955	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,23:25:64:0.359:2	0/1:32,14:28:46:0.304:2	./.	0/1:0,48:28:48:1.00:2	./.	./.
chr16	88633052	rs56983565	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,26:30:69:0.377:2	0/1:31,16:30:47:0.340:2	0/1:5,3:33:8:0.375:2	0/1:55,36:31:91:0.396:2	./.	0/1:0,93:31:93:1.00:2	0/1:4,100:30:104:0.962:2	0/1:3,91:31:94:0.968:2	./.	0/1:1,82:30:83:0.988:2	0/1:0,81:30:81:1.00:2
chr16	88644005	rs899728	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,15:32:26:0.577:2	0/1:13,9:30:22:0.409:2	0/1:0,5:31:5:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,22:31:22:1.00:2
chr16	88706330	rs11076688	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,8:32:14:0.571:2	./.	./.
chr16	88713236	rs4673	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:28:6:1.00:2	0/1:0,35:32:35:1.00:2	0/1:21,17:33:38:0.447:2	0/1:9,35:31:44:0.795:2	0/1:0,58:33:58:1.00:2	0/1:0,26:32:26:1.00:2	0/1:17,19:33:36:0.528:2	0/1:1,22:32:23:0.957:2	./.
chr16	88713501	rs4782393	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:30:4:1.00:2	0/1:0,8:31:8:1.00:2	./.	0/1:4,6:27:10:0.600:2	0/1:7,4:32:11:0.364:2	0/1:0,4:31:4:1.00:2	0/1:4,15:32:19:0.789:2	0/1:0,2:32:2:1.00:2	./.
chr16	88717386	rs8053867	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:33:35:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,44:33:44:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,36:33:36:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,15:33:15:1.00:2
chr16	88722132	rs112697935	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,33:32:68:0.485:2	./.	./.	./.	./.	./.
chr16	88724347	rs2279258	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,28:31:28:1.00:2	0/1:10,17:31:27:0.630:2	./.	0/1:0,32:30:32:1.00:2	0/1:19,19:32:38:0.500:2	0/1:0,46:31:46:1.00:2	0/1:21,17:32:38:0.447:2	0/1:0,25:32:25:1.00:2
chr16	88763958	rs11076700	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,69:32:69:1.00:2	0/1:0,38:32:38:1.00:2	./.	./.	0/1:0,107:31:107:1.00:2	./.	0/1:33,29:31:62:0.468:2	0/1:63,53:32:116:0.457:2	./.	0/1:17,37:31:54:0.685:2	0/1:29,28:31:57:0.491:2
chr16	88763963	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:115,4:33:119:0.034:2	./.	./.	./.	./.	./.	./.
chr16	88767769	rs2306049	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,47:33:47:1.00:2	0/1:0,21:32:21:1.00:2	0/1:4,4:32:8:0.500:2	./.	0/1:1,99:32:100:0.990:2	./.	0/1:38,38:32:76:0.500:2	0/1:68,44:33:112:0.393:2	0/1:40,46:33:86:0.535:2	0/1:1,55:32:56:0.982:2	0/1:32,18:31:50:0.360:2
chr16	88779032	rs2290896	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,8:31:18:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	88779132	rs2290895	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,6:27:15:0.400:2	0/1:35,31:29:66:0.470:2	./.	./.	0/1:32,22:30:54:0.407:2	./.	0/1:19,38:30:57:0.667:2	./.	./.
chr16	88779739	rs11549837	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:30,13:28:43:0.302:2	0/1:13,9:28:22:0.409:2	./.	0/1:27,38:28:66:0.585:2	./.	0/1:30,21:28:51:0.412:2	./.	./.	./.	0/1:25,18:27:43:0.419:2	0/1:21,16:27:37:0.432:2
chr16	88779753	rs73262667	C	T,G	.	PASS	AC=4,1;AF=0.267,0.067;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant9	GT:BQ:DP:FA:SS	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0/1:33:3:0.667:2	0/1:31:71:0.394:2	./.	0/2:31:53:0.453:2	0/1:31:108:0.380:2	./.	0/1:32:54:0.500:2	./.	./.
chr16	88780090	rs2290904	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,6:28:12:0.500:2	0/1:61,32:28:93:0.344:2	./.	./.	0/1:37,33:28:70:0.471:2	./.	0/1:45,35:29:80:0.438:2	./.	./.
chr16	88780175	rs4782321	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:41,33:32:74:0.446:2	0/1:23,22:31:45:0.489:2	./.	./.	./.	./.	./.	./.	./.	0/1:59,52:31:111:0.468:2	./.
chr16	88781040	rs8059048	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,42:30:88:0.477:2	./.	0/1:48,46:29:94:0.489:2	./.	./.	./.	./.	0/1:21,27:29:48:0.563:2
chr16	88781073	rs11549835	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:12,19:32:31:0.613:2	0/1:17,11:32:28:0.393:2	./.	./.	./.	./.	./.	./.	./.	0/1:19,19:31:38:0.500:2	./.
chr16	88781125	rs8043637	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,12:25:12:1.00:2	0/1:0,6:26:6:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,8:28:8:1.00:2	0/1:0,17:27:17:1.00:2	./.	0/1:0,4:26:4:1.00:2	0/1:7,4:21:11:0.364:2	0/1:0,5:28:5:1.00:2	0/1:0,12:27:12:1.00:2	0/1:0,4:29:4:1.00:2
chr16	88781534	rs61737996	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:31:5:0.600:2	0/1:18,15:33:33:0.455:2	./.	./.	0/1:12,21:33:33:0.636:2	./.	0/1:20,30:33:50:0.600:2	./.	./.
chr16	88781614	rs1058158	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:21,12:28:33:0.364:2	0/1:14,10:28:24:0.417:2	./.	./.	0/1:0,50:30:50:1.00:2	./.	./.	0/1:33,21:30:54:0.389:2	0/1:24,15:29:39:0.385:2	0/1:23,21:28:44:0.477:2	0/1:14,14:28:28:0.500:2
chr16	88782079	rs1061228	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:31:10:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.
chr16	88782217	rs35544968	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,28:30:47:0.596:2	./.	./.	./.	./.	0/1:22,12:32:34:0.353:2	./.	./.
chr16	88782676	rs2290902	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:33:33:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,41:31:41:1.00:2	0/1:25,27:32:52:0.519:2	0/1:0,37:33:37:1.00:2	0/1:19,18:32:37:0.486:2	0/1:0,32:34:32:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,25:32:25:1.00:2
chr16	88783100	rs1803382	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:25,18:30:43:0.419:2	0/1:9,9:29:18:0.500:2	./.	./.	0/1:0,62:29:62:1.00:2	./.	0/1:28,19:30:47:0.404:2	0/1:29,11:30:40:0.275:2	0/1:10,19:30:29:0.655:2	0/1:24,15:29:39:0.385:2	0/1:11,11:30:22:0.500:2
chr16	88783449	rs8057031	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,10:32:34:0.294:2	0/1:16,7:32:23:0.304:2	0/1:5,8:34:13:0.615:2	0/1:1,51:33:52:0.981:2	./.	0/1:41,38:32:79:0.481:2	0/1:74,43:33:117:0.368:2	0/1:109,4:34:114:0.035:2	0/1:39,41:34:80:0.513:2	0/1:32,21:33:54:0.396:2	0/1:20,28:32:48:0.583:2
chr16	88783521	rs6500491	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:29:40:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,13:27:13:1.00:2	0/1:0,54:28:54:1.00:2	0/1:0,132:28:132:1.00:2	0/1:37,42:29:79:0.532:2	0/1:1,113:29:114:0.991:2	0/1:50,57:28:107:0.533:2	0/1:0,73:29:74:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,38:29:38:1.00:2
chr16	88787144	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,28:30:42:0.667:2	./.	./.	./.
chr16	88787673	rs35159887	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:18,18:31:36:0.500:2	0/1:10,7:31:18:0.412:2	0/1:2,4:29:6:0.667:2	./.	0/1:0,34:30:34:1.00:2	./.	0/1:18,16:32:34:0.471:2	0/1:23,7:31:30:0.233:2	0/1:12,7:31:19:0.368:2	0/1:15,13:31:28:0.464:2	0/1:11,3:33:14:0.214:2
chr16	88787704	rs8043924	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,44:30:45:0.978:2	0/1:0,26:29:26:1.00:2	0/1:0,6:27:6:1.00:2	0/1:0,40:30:40:1.00:2	0/1:0,35:29:35:1.00:2	0/1:27,22:31:50:0.449:2	0/1:0,34:29:34:1.00:2	0/1:24,18:31:42:0.429:2	0/1:0,27:31:27:1.00:2	0/1:0,41:30:41:1.00:2	0/1:1,19:29:20:0.950:2
chr16	88788034	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,72:30:127:0.567:2	./.	./.	./.	./.	./.	./.
chr16	88791458	rs11645197	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:20,26:30:46:0.565:2	0/1:15,17:32:32:0.531:2	0/1:4,5:31:9:0.556:2	./.	0/1:14,14:31:28:0.500:2	./.	0/1:2,16:31:18:0.889:2	0/1:15,5:31:20:0.250:2	0/1:17,10:29:27:0.370:2	0/1:15,22:31:37:0.595:2	0/1:12,9:32:21:0.429:2
chr16	88792047	rs4782430	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:31:53:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,99:33:100:1.00:2	0/1:0,60:32:60:1.00:2	0/1:62,45:33:107:0.421:2	0/1:0,74:32:74:1.00:2	0/1:56,52:31:108:0.481:2	0/1:0,98:33:98:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,74:32:74:1.00:2
chr16	88792097	rs4782429	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:32:60:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,67:33:67:1.00:2	0/1:60,46:32:106:0.434:2	0/1:0,56:32:57:1.00:2	0/1:58,48:32:106:0.453:2	0/1:0,98:33:98:1.00:2	0/1:0,51:33:51:1.00:2	0/1:0,67:32:67:1.00:2
chr16	88800124	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,7:30:17:0.412:2	./.	./.	./.	./.	./.	./.
chr16	88800398	rs62639697	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,7:32:36:0.194:2	./.
chr16	88800785	rs35265318	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:14,21:26:35:0.600:2	0/1:5,5:29:10:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:11,20:27:31:0.645:2	./.
chr16	88800814	rs35353288	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:23,22:30:45:0.489:2	0/1:10,7:31:17:0.412:2	./.	./.	./.	./.	./.	./.	./.	0/1:18,38:29:56:0.679:2	./.
chr16	88800899	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:33:60:0.067:2
chr16	88800913	rs34908386	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:8,25:27:33:0.758:2	0/1:6,6:31:12:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:17,19:30:36:0.528:2	./.
chr16	88802573	rs78905828	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:10,7:30:17:0.412:2	0/1:6,8:31:14:0.571:2	./.	./.	./.	./.	./.	./.	./.	0/1:7,13:31:20:0.650:2	./.
chr16	88802748	rs61742623	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:72,80:31:152:0.526:2	0/1:64,33:32:97:0.340:2	./.	./.	./.	./.	./.	./.	./.	0/1:95,98:32:193:0.508:2	./.
chr16	88870967	rs475667	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:23,17:31:40:0.425:2	0/1:7,9:32:16:0.563:2	0/1:1,4:32:5:0.800:2	./.	./.	./.	./.	0/1:31,24:30:55:0.436:2	./.	0/1:24,21:28:45:0.467:2	./.
chr16	88872145	rs507329	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,25:31:25:1.00:2	0/1:0,9:30:9:1.00:2	./.	0/1:0,36:31:36:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,19:30:19:1.00:2
chr16	88872229	rs480727	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:14,9:28:24:0.391:2	0/1:12,6:28:18:0.333:2	./.	0/1:37,21:30:58:0.362:2	./.	0/1:26,32:29:58:0.552:2	./.	0/1:52,43:29:95:0.453:2	0/1:0,80:30:80:1.00:2	0/1:0,53:29:53:1.00:2	0/1:19,16:28:35:0.457:2
chr16	88872511	rs510862	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,8:27:18:0.471:2	0/1:7,6:28:13:0.462:2	0/1:0,6:30:6:1.00:2	0/1:18,14:29:32:0.438:2	0/1:19,9:30:28:0.321:2	0/1:18,11:28:29:0.379:2	0/1:0,24:29:24:1.00:2	0/1:0,16:28:16:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,5:29:5:1.00:2
chr16	88874632	rs572275	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,31:32:55:0.564:2	0/1:16,13:32:29:0.448:2	0/1:5,3:32:8:0.375:2	0/1:40,28:32:68:0.412:2	./.	0/1:43,41:32:84:0.488:2	./.	./.	0/1:0,64:33:64:1.00:2	0/1:20,28:32:48:0.583:2	0/1:11,8:30:19:0.421:2
chr16	88884466	rs2303271	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,58:32:59:0.983:2	./.	0/1:24,25:30:49:0.510:2	./.	0/1:25,30:31:55:0.545:2	0/1:0,33:32:33:1.00:2	0/1:10,13:32:23:0.565:2	0/1:24,14:32:38:0.368:2
chr16	88891240	rs2303269	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,62:31:124:0.504:2	./.	0/1:31,16:30:47:0.340:2	./.
chr16	88901673	rs35232749	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,58:31:123:0.472:2	./.	0/1:46,36:32:82:0.439:2	./.
chr16	88901744	rs61742258	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,41:31:121:0.339:2	./.	./.	./.	./.	./.	./.	./.
chr16	88902183	rs1064315	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,115:31:116:0.991:2	./.	0/1:83,75:30:158:0.475:2	./.	./.	0/1:0,103:32:103:1.00:2	./.	0/1:64,30:32:94:0.319:2
chr16	88904086	rs3743544	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,26:29:52:0.500:2	./.	0/1:34,37:29:71:0.521:2	./.
chr16	88908306	rs34278797	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,62:31:147:0.422:2	./.	./.	./.	./.	./.	./.	./.
chr16	88925112	rs114835271	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,62:31:126:0.492:2	./.	./.	./.
chr16	88926388	rs28444630	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,7:31:35:0.200:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	88928058	rs143200032	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,15:29:20:0.750:2	0/1:7,8:27:15:0.533:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	88931491	rs148432784	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,20:32:29:0.690:2	./.
chr16	88931509	rs76746996	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,5:30:21:0.238:2	0/1:7,13:30:20:0.650:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	88932769	rs146771138	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,36:33:77:0.468:2	./.	./.	./.	./.	./.	./.	./.
chr16	88932976	rs77252404	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,7:33:16:0.438:2	0/1:6,5:32:11:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	88933001	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,3:32:31:0.097:2	./.	./.	./.
chr16	88949084	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:32:155:0.026:2	./.	./.	./.	./.	./.
chr16	88951594	rs61757659	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,20:30:56:0.364:2	./.	./.	./.
chr16	88964557	rs61734177	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,6:32:14:0.429:2	./.	0/1:18,15:33:33:0.455:2	./.	0/1:23,14:32:37:0.378:2
chr16	88968012	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,22:31:37:0.595:2	./.	./.	./.	./.	./.	./.	./.
chr16	89167094	rs7188200	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,2:29:2:1.00:2	./.	./.	0/1:0,2:27:2:1.00:2	./.	0/1:0,2:30:2:1.00:2	./.	0/1:0,3:26:3:1.00:2	0/1:0,3:32:3:1.00:2	./.	./.
chr16	89167140	rs7201122	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,5:33:5:1.00:2	./.	./.	0/1:0,8:33:8:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,2:34:2:1.00:2	./.	0/1:0,6:31:6:1.00:2	0/1:0,7:34:7:1.00:2	0/1:0,3:34:3:1.00:2	./.
chr16	89167395	rs6500526	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,21:31:23:0.913:2	0/1:0,19:30:19:1.00:2	./.	0/1:0,21:31:21:1.00:2	0/1:75,11:32:86:0.128:2	0/1:0,26:30:26:1.00:2	0/1:51,16:31:67:0.239:2	0/1:1,38:30:39:0.974:2	0/1:0,35:31:35:1.00:2	0/1:41,4:29:45:0.089:2	0/1:0,28:31:28:1.00:2
chr16	89167404	rs7193255	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,19:28:21:0.905:2	0/1:0,16:27:16:1.00:2	./.	0/1:0,22:27:22:1.00:2	0/1:83,9:31:92:0.098:2	0/1:0,21:29:21:1.00:2	0/1:56,13:29:69:0.188:2	0/1:1,33:29:34:0.971:2	0/1:0,29:28:29:1.00:2	0/1:45,4:27:49:0.082:2	0/1:0,25:28:25:1.00:2
chr16	89167431	rs6500527	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,18:32:19:0.947:2	0/1:0,21:31:21:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,25:32:25:1.00:2	0/1:83,13:32:96:0.135:2	0/1:0,35:31:35:1.00:2	0/1:73,20:32:93:0.215:2	0/1:1,40:31:41:0.976:2	0/1:0,25:32:25:1.00:2	0/1:50,12:29:62:0.194:2	0/1:0,29:32:29:1.00:2
chr16	89167443	rs6500528	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,20:28:21:0.952:2	0/1:0,20:29:20:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,25:30:25:1.00:2	0/1:82,18:30:104:0.180:2	0/1:0,40:30:40:1.00:2	0/1:72,22:28:94:0.234:2	0/1:1,47:29:48:0.979:2	0/1:0,27:31:27:1.00:2	0/1:51,13:26:64:0.203:2	0/1:0,32:28:32:1.00:2
chr16	89167458	rs6500529	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,27:25:28:0.964:2	0/1:1,22:29:23:0.957:2	0/1:0,5:28:5:1.00:2	0/1:0,37:27:39:1.00:2	0/1:88,25:27:114:0.221:2	0/1:0,55:27:55:1.00:2	0/1:74,28:27:102:0.275:2	0/1:1,68:27:69:0.986:2	0/1:0,40:27:40:1.00:2	0/1:48,14:27:62:0.226:2	0/1:0,40:26:40:1.00:2
chr16	89180883	rs3743979	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,75:30:75:1.00:2	0/1:40,42:30:82:0.512:2	0/1:0,79:30:80:1.00:2	0/1:31,43:30:74:0.581:2	0/1:2,80:31:82:0.976:2	0/1:0,54:31:54:1.00:2	0/1:26,19:31:45:0.422:2	0/1:0,47:31:47:1.00:2
chr16	89199651	rs12447947	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,43:31:45:0.956:2	0/1:4,20:32:24:0.833:2	0/1:15,19:31:34:0.559:2	0/1:16,9:31:25:0.360:2	0/1:30,14:32:44:0.318:2	0/1:42,25:33:67:0.373:2	0/1:22,14:31:36:0.389:2	0/1:0,39:32:39:1.00:2
chr16	89246670	rs59865771	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,31:30:66:0.470:2	./.	./.	0/1:41,49:30:90:0.544:2	./.	./.	0/1:25,19:30:44:0.432:2	./.
chr16	89246737	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:111,4:32:115:0.035:2	./.	./.	./.	./.	./.	./.
chr16	89256695	rs72819366	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:40,26:32:66:0.394:2	0/1:17,13:32:30:0.433:2	./.	./.	./.	./.	./.	./.	./.	0/1:41,20:32:61:0.328:2	./.
chr16	89259993	rs3815615	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:25,15:32:40:0.375:2	0/1:10,11:31:21:0.524:2	./.	0/1:19,21:31:40:0.525:2	./.	./.	0/1:30,22:32:52:0.423:2	./.	./.	0/1:17,15:33:32:0.469:2	./.
chr16	89289624	rs12920028	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,54:31:124:0.435:2	./.	./.	./.	./.
chr16	89291951	rs11434355	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,118:32:118:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,109:31:110:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,131:31:131:1.00:2	0/1:94,11:31:105:0.105:2	0/1:1,93:31:94:0.989:2	0/1:0,132:32:132:1.00:2	0/1:0,116:31:116:1.00:2	0/1:2,157:32:159:0.987:2
chr16	89293271	rs28417933	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,126:32:126:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,172:32:172:1.00:2	0/1:1,94:32:95:0.989:2	0/1:0,140:32:140:1.00:2	0/1:42,38:32:80:0.475:2	0/1:3,125:32:128:0.977:2	0/1:0,168:33:168:1.00:2	0/1:3,146:32:149:0.980:2	0/1:0,163:32:163:1.00:2
chr16	89293579	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:33:72:0.056:2	./.
chr16	89293614	rs4785626	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:33:46:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,59:32:59:1.00:2	0/1:1,53:31:54:0.981:2	0/1:0,53:32:53:1.00:2	0/1:29,34:32:63:0.540:2	0/1:0,56:32:56:1.00:2	0/1:0,43:34:43:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,56:33:56:1.00:2
chr16	89294184	rs4785627	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,15:32:15:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,21:31:21:1.00:2	0/1:12,17:31:29:0.586:2	0/1:0,34:32:34:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,32:32:32:1.00:2
chr16	89294373	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:31:57:0.070:2	./.	./.	./.	./.	./.
chr16	89294381	rs28415940	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:32:56:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,55:31:55:1.00:2	0/1:27,27:33:54:0.500:2	0/1:0,72:32:72:1.00:2	0/1:1,73:33:74:0.986:2	0/1:0,54:33:54:1.00:2	0/1:0,76:32:76:1.00:2
chr16	89294439	rs9921361	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:32:72:1.00:2	0/1:1,39:31:40:0.975:2	0/1:0,7:30:7:1.00:2	0/1:0,97:31:97:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,73:30:73:1.00:2	0/1:61,36:31:97:0.371:2	0/1:0,113:30:113:1.00:2	0/1:1,90:32:91:0.989:2	0/1:1,75:31:76:0.987:2	0/1:1,112:32:113:0.991:2
chr16	89294511	rs28638280	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:33:88:1.00:2	0/1:1,44:33:45:0.978:2	0/1:0,19:32:19:1.00:2	0/1:0,102:33:102:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,123:32:123:1.00:2	0/1:65,57:33:122:0.467:2	0/1:0,98:32:98:1.00:2	0/1:0,76:33:76:1.00:2	0/1:1,98:33:99:0.990:2	0/1:0,115:33:115:1.00:2
chr16	89294595	rs74466939	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,27:32:56:0.482:2	./.	./.
chr16	89294687	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:34:127:0.031:2	./.	./.
chr16	89294697	rs60437616	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,108:31:108:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,128:30:128:1.00:2	0/1:0,136:30:136:1.00:2	0/1:0,124:30:124:1.00:2	0/1:98,62:30:160:0.388:2	0/1:0,144:30:144:1.00:2	0/1:0,126:31:126:1.00:2	0/1:0,128:31:128:1.00:2	0/1:2,144:31:146:0.986:2
chr16	89345728	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,4:32:87:0.046:2	./.	./.	./.	./.	./.	./.	./.
chr16	89345928	rs4031012	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:30:6:0.667:2	./.	./.	./.	./.	./.
chr16	89346463	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:30:43:0.093:2	./.	./.	./.	./.
chr16	89347612	rs75362060	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,36:30:75:0.480:2	./.	./.	./.	./.	./.
chr16	89347929	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:32:136:0.029:2
chr16	89347957	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,4:32:143:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr16	89348606	rs61744778	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,51:30:105:0.486:2	./.	./.	./.
chr16	89350038	rs2279348	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:26:49:1.00:2	0/1:0,36:29:37:1.00:2	0/1:0,7:30:8:1.00:2	0/1:13,27:27:41:0.675:2	0/1:15,13:28:29:0.464:2	0/1:0,26:29:26:1.00:2	0/1:1,14:28:15:0.933:2	0/1:17,22:27:39:0.564:2	0/1:0,40:26:40:1.00:2	0/1:0,38:27:39:1.00:2	0/1:2,27:27:30:0.931:2
chr16	89350178	rs2279349	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:32:42:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,24:33:24:1.00:2	0/1:33,29:32:62:0.468:2	0/1:0,48:33:48:1.00:2	0/1:1,44:32:45:0.978:2	0/1:0,62:33:62:1.00:2
chr16	89350911	rs145694621	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,88:33:192:0.458:2	./.	./.
chr16	89351652	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,5:27:139:0.036:2	./.	./.	./.
chr16	89351930	rs142539117	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,98:32:189:0.519:2	./.	./.	./.
chr16	89352447	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:33:46:0.087:2	./.
chr16	89598356	rs116319889	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,21:29:36:0.583:2	./.	./.	./.	./.
chr16	89613076	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,10:15:72:0.139:2	./.	./.	./.
chr16	89613123	rs2292954	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,31:29:75:0.419:2	0/1:54,23:29:77:0.299:2	./.	./.	./.	./.
chr16	89620328	rs12960	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,39:32:83:0.470:2	0/1:20,30:31:50:0.600:2	./.	./.	./.	./.
chr16	89623405	rs61747711	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,24:31:62:0.387:2	./.	./.	./.	./.
chr16	89627371	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,4:31:33:0.121:2	./.	./.
chr16	89627460	rs2280370	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,6:28:23:0.261:2	0/1:13,6:32:19:0.316:2	./.	./.	./.	0/1:6,8:32:14:0.571:2	0/1:13,8:33:21:0.381:2	./.	./.	./.	./.
chr16	89628073	rs9930567	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,48:30:104:0.462:2	0/1:21,19:31:40:0.475:2	0/1:9,8:30:17:0.471:2	0/1:50,77:30:127:0.606:2	0/1:77,68:30:145:0.469:2	./.	./.	0/1:5,169:31:174:0.971:2	0/1:78,58:31:136:0.426:2	./.	0/1:2,114:30:116:0.983:2
chr16	89650505	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:31:71:0.056:2	./.	./.	./.	./.	./.
chr16	89653150	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:32:67:0.060:2	./.	./.	./.
chr16	89662990	rs694285	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,10:29:25:0.400:2	./.
chr16	89704365	rs1126464	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:61,61:32:122:0.500:2	0/1:36,50:33:86:0.581:2	./.	./.	./.	./.	./.	./.	./.	0/1:74,60:32:135:0.448:2	./.
chr16	89715813	rs201479143	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,51:31:97:0.526:2	./.
chr16	89724715	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:31:91:0.044:2	./.	./.
chr16	89760652	rs2162943	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,42:31:75:0.560:2	./.	0/1:1,59:31:60:0.983:2	./.	./.	0/1:26,36:32:62:0.581:2	./.	./.
chr16	89761479	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:31:58:0.069:2	./.
chr16	89764237	rs11866038	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,6:30:13:0.462:2	./.	./.	./.	./.	./.
chr16	89764549	rs3751695	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:3,9:33:12:0.750:2	0/1:4,6:32:10:0.600:2	./.	./.	0/1:5,5:32:10:0.500:2	./.	./.	0/1:4,5:31:9:0.556:2	./.	0/1:0,9:30:9:1.00:2	./.
chr16	89777078	rs56288641	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,21:31:35:0.600:2	./.	./.	./.	./.
chr16	89777761	rs12920315	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:28,35:30:63:0.556:2	0/1:18,19:30:37:0.514:2	./.	./.	0/1:59,69:29:128:0.539:2	0/1:0,120:28:120:1.00:2	./.	0/1:2,133:29:135:0.985:2	0/1:48,55:30:103:0.534:2	0/1:0,109:30:109:1.00:2	./.
chr16	89778350	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,43:29:84:0.512:2	./.
chr16	89782989	rs7206570	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:32:76:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,76:33:77:1.00:2	0/1:66,40:30:106:0.377:2	0/1:0,77:32:77:1.00:2	0/1:0,80:32:80:1.00:2	0/1:2,107:32:109:0.982:2	0/1:0,99:33:100:1.00:2	0/1:0,60:32:61:1.00:2	0/1:0,66:32:66:1.00:2
chr16	89783187	rs4785706	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:30:37:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,42:29:43:1.00:2	0/1:0,44:30:44:1.00:2
chr16	89789898	rs6500437	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:28,27:27:56:0.491:2	0/1:16,25:28:41:0.610:2	./.	0/1:64,48:29:112:0.429:2	./.	0/1:61,48:27:109:0.440:2	./.	0/1:57,63:28:120:0.525:2	0/1:60,41:30:101:0.406:2	0/1:43,32:28:75:0.427:2	./.
chr16	89799804	rs76023376	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,48:32:90:0.533:2	./.	./.	./.	./.	./.	./.
chr16	89799950	rs17177891	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,71:31:160:0.444:2	./.	./.
chr16	89805914	rs9282681	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,68:30:103:0.660:2	./.	./.
chr16	89807233	rs11649210	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,66:31:138:0.478:2	./.	./.	./.	0/1:89,91:34:180:0.506:2	./.	./.
chr16	89809319	rs1800358	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,29:28:62:0.468:2	./.	./.	./.	0/1:28,35:30:63:0.556:2	./.	./.
chr16	89813078	rs61753269	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,16:32:32:0.500:2	./.	./.	./.	./.	./.	./.
chr16	89815152	rs17233497	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,25:32:48:0.521:2	./.	./.
chr16	89825065	rs17226980	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,30:33:64:0.469:2	./.	./.
chr16	89828437	rs17233253	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,23:34:75:0.307:2	./.	./.
chr16	89836323	rs7195066	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:41,22:31:63:0.349:2	0/1:12,24:32:36:0.667:2	./.	0/1:32,33:30:65:0.508:2	0/1:0,108:31:108:1.00:2	./.	./.	0/1:45,54:31:99:0.545:2	0/1:1,65:32:66:0.985:2	0/1:0,51:31:51:1.00:2	./.
chr16	89839766	rs17232910	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,20:33:31:0.645:2	./.	./.
chr16	89845194	rs1800337	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,9:32:23:0.391:2	0/1:3,4:33:7:0.571:2	./.	0/1:20,23:33:43:0.535:2	0/1:0,20:33:20:1.00:2	0/1:21,9:33:30:0.300:2	./.	0/1:29,21:33:50:0.420:2	0/1:0,45:34:45:1.00:2	0/1:0,26:33:27:1.00:2	./.
chr16	89849480	rs2239359	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,59:32:148:0.399:2	0/1:97,84:32:181:0.464:2	./.	./.	./.	0/1:1,157:33:158:0.994:2	0/1:66,69:33:135:0.511:2	./.
chr16	89857935	rs11646374	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,20:31:49:0.408:2	./.	./.
chr16	89858417	rs1800331	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,68:34:132:0.515:2	./.	./.
chr16	89866043	rs7190823	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,33:28:75:0.440:2	0/1:25,21:29:46:0.457:2	./.	0/1:36,36:30:72:0.500:2	0/1:0,76:29:76:1.00:2	0/1:61,34:30:95:0.358:2	./.	0/1:74,53:29:127:0.417:2	0/1:0,87:30:87:1.00:2	0/1:0,90:29:90:1.00:2	./.
chr16	89920717	rs12921652	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,85:31:160:0.531:2	./.	./.	./.	./.	./.	./.
chr16	89924861	rs143752388	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,23:32:33:0.697:2	0/1:8,7:32:15:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	89954138	rs9922515	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,32:33:66:0.485:2	./.	./.	./.	0/1:55,60:33:115:0.522:2	./.	./.
chr16	89962394	rs2293586	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,38:29:87:0.437:2	./.	./.	./.	0/1:15,32:30:47:0.681:2	./.	./.
chr16	89965055	rs11648433	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,16:31:30:0.533:2	./.	./.
chr16	89971469	rs144937287	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,24:30:34:0.706:2	./.	./.	./.	./.
chr16	89977520	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,27:8:119:0.229:2	./.	./.	./.
chr16	89977604	rs17850490	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,42:30:74:0.568:2	./.	./.	./.	./.	./.	./.
chr16	89985844	rs1805005	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	./.	./.	0/1:85,84:30:169:0.497:2	./.	0/1:53,67:31:120:0.558:2	./.	./.
chr16	89985940	rs2228479	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,31:32:63:0.492:2	./.	./.
chr16	89986117	rs1805007	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,17:30:28:0.607:2	./.	./.	./.	./.	./.
chr16	89986546	rs1805009	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,62:30:136:0.456:2	./.	./.	./.	./.
chr16	89986608	rs2228478	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,97:28:195:0.497:2	./.	./.	./.	0/1:96,97:28:193:0.503:2	./.	./.
chr16	89986760	rs3212369	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,39:31:67:0.582:2	./.	./.	./.	0/1:43,42:32:85:0.494:2	./.	./.
chr16	89987201	rs3212371	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,9:29:21:0.429:2	./.	./.	./.	0/1:9,12:33:21:0.571:2	./.	./.
chr16	90001336	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:31:148:0.027:2	./.	./.	./.	./.
chr16	90001339	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:31:152:0.026:2	./.	./.	./.	./.
chr16	90001367	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,7:27:197:0.036:2	./.	./.	./.	./.
chr16	90001381	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:31:138:0.029:2	./.
chr16	90037828	rs4785755	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,191:31:191:1.00:2	0/1:0,98:31:98:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,188:30:188:1.00:2	0/1:0,192:29:192:1.00:2	0/1:0,189:29:189:1.00:2	0/1:0,192:30:192:1.00:2	0/1:0,191:30:191:1.00:2	0/1:1,186:31:187:0.995:2	0/1:1,194:31:195:0.995:2	0/1:0,190:30:190:1.00:2
chr16	90038786	rs4424910	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:33:36:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,69:33:69:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,25:34:25:1.00:2	0/1:0,42:33:42:1.00:2
chr16	90075827	rs201800670	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,10:32:14:0.714:2	./.	./.
chr16	90076385	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:175,4:33:179:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr16	90095484	rs3785184	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,19:32:55:0.345:2	0/1:26,23:32:49:0.469:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	90095561	rs3785183	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,31:31:56:0.554:2	0/1:21,16:31:37:0.432:2	0/1:4,6:29:10:0.600:2	0/1:48,43:31:91:0.473:2	0/1:1,73:31:74:0.986:2	./.	0/1:2,85:31:87:0.977:2	0/1:52,48:31:100:0.480:2	0/1:2,76:32:78:0.974:2	0/1:0,59:32:59:1.00:2	0/1:0,49:31:49:1.00:2
chr16	90095596	rs55742939	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,5:33:38:0.132:2	./.	0/1:39,4:30:43:0.093:2	./.	./.	0/1:28,5:31:33:0.152:2	./.
chr16	90095597	rs61118444	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,5:32:33:0.152:2	./.	./.	./.	./.	0/1:28,5:28:33:0.152:2	./.
chr16	90095620	rs61740023	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,13:30:19:0.684:2	0/1:3,5:32:8:0.625:2	./.	0/1:43,8:33:51:0.157:2	0/1:8,5:28:13:0.385:2	./.	./.	0/1:11,3:33:14:0.214:2	0/1:4,11:33:15:0.733:2	0/1:10,7:29:18:0.412:2	0/1:4,3:35:7:0.429:2
chr16	90096003	rs12926012	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,46:29:124:0.371:2	0/1:40,24:32:64:0.375:2	0/1:15,10:32:25:0.400:2	0/1:100,78:31:178:0.438:2	0/1:1,157:31:158:0.994:2	./.	0/1:4,145:31:150:0.973:2	0/1:107,65:31:172:0.378:2	0/1:5,136:32:141:0.965:2	0/1:2,100:31:102:0.980:2	0/1:0,138:31:138:1.00:2
chr16	90096067	rs12925087	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:113,60:32:173:0.347:2	0/1:51,37:32:88:0.420:2	0/1:17,21:31:38:0.553:2	0/1:126,64:31:190:0.337:2	0/1:0,126:31:127:1.00:2	./.	0/1:4,153:31:157:0.975:2	0/1:120,73:32:193:0.378:2	0/1:2,185:32:187:0.989:2	0/1:0,142:32:142:1.00:2	0/1:0,187:31:187:1.00:2
chr16	90096298	rs62054619	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:33:5:0.800:2	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	90097748	rs2302513	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,12:30:21:0.571:2	0/1:3,6:31:9:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr16	90099272	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:133,4:32:137:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr16	90102835	rs868045	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:31:9:1.00:2	0/1:67,72:33:139:0.518:2	0/1:94,58:33:153:0.382:2	0/1:0,135:33:135:1.00:2	./.	0/1:66,61:33:127:0.480:2	./.	./.	0/1:66,46:33:113:0.411:2
chr16	90109711	rs3743825	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,4:32:6:0.667:2	0/1:3,6:31:9:0.667:2	./.	0/1:12,9:29:21:0.429:2	0/1:9,12:29:21:0.571:2	0/1:0,16:31:16:1.00:2	./.	0/1:14,9:30:23:0.391:2	0/1:8,4:31:12:0.333:2	./.	0/1:0,9:31:9:1.00:2
chr16	90110027	rs3743824	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,6:33:12:0.500:2	./.	0/1:8,16:30:24:0.667:2
chr16	90110289	rs1048148	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,24:33:59:0.407:2	./.	0/1:24,18:32:42:0.429:2
chr16	90110950	rs1048149	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,81:33:189:0.429:2	./.	0/1:84,82:31:166:0.494:2
chr16	90124815	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:31:115:0.035:2	./.	./.	./.	./.	./.
chr16	90126912	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:126,4:31:130:0.031:2	./.	./.	./.	./.	./.	./.	./.	0/1:143,5:31:148:0.034:2	./.	./.
chr16	90126993	rs150196149	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,64:29:170:0.379:2
chr16	90127875	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:31:97:0.041:2	./.	./.	./.
chr16	90127943	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,4:33:55:0.073:2	./.	./.	./.	./.	./.	./.	./.
chr16	90130136	rs2078478	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:32:137:0.029:2	./.	./.	./.	./.
chr16	90141337	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,7:20:179:0.039:2	./.	./.
chr16	90141352	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.	./.	0/1:177,4:33:181:0.022:2	./.	./.
chr16	90141355	rs12925933	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:103,72:32:175:0.411:2	0/1:106,67:31:173:0.387:2	0/1:0,39:32:39:1.00:2	0/1:1,175:31:176:0.994:2	0/1:5,179:31:184:0.973:2	0/1:3,175:31:178:0.983:2	0/1:8,175:31:183:0.956:2	0/1:6,170:31:176:0.966:2	0/1:98,80:32:179:0.449:2	0/1:5,171:31:176:0.972:2	0/1:106,65:31:171:0.380:2
chr16	90141374	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:31:176:0.023:2	./.	./.	./.	./.	./.
chr17	6113	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:31:114:0.035:2	./.	./.	./.	./.
chr17	6115	rs61739713	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,63:28:64:0.984:2	0/1:1,27:29:28:0.964:2	0/1:12,7:29:19:0.368:2	0/1:0,86:29:86:1.00:2	0/1:0,119:29:119:1.00:2	0/1:78,54:29:132:0.409:2	0/1:0,109:30:109:1.00:2	0/1:0,103:30:103:1.00:2	0/1:0,99:30:99:1.00:2	0/1:39,23:27:62:0.371:2	0/1:0,48:28:48:1.00:2
chr17	6157	rs2294076	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,49:30:50:0.980:2	0/1:0,18:31:18:1.00:2	0/1:9,3:31:12:0.250:2	0/1:0,62:30:62:1.00:2	0/1:0,86:29:86:1.00:2	0/1:59,36:30:95:0.379:2	0/1:0,96:30:96:1.00:2	0/1:0,80:31:81:1.00:2	0/1:0,69:31:69:1.00:2	0/1:38,22:30:60:0.367:2	0/1:0,41:29:41:1.00:2
chr17	11970	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:32:77:0.052:2	./.
chr17	14008	rs2294075	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:32:64:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,87:31:87:1.00:2	0/1:0,161:31:161:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,137:32:137:1.00:2	0/1:0,116:32:116:1.00:2	0/1:0,100:33:100:1.00:2	0/1:40,39:32:79:0.494:2	0/1:0,71:32:72:1.00:2
chr17	171098	rs73971738	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,15:26:43:0.349:2	0/1:17,6:28:23:0.261:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	171197	rs150560792	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,18:32:39:0.462:2	./.	./.	./.
chr17	260142	rs7503725	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:30:4:1.00:2	0/1:0,2:30:2:1.00:2	./.	./.	0/1:0,2:29:2:1.00:2	0/1:0,3:33:3:1.00:2	./.	./.
chr17	260182	rs7502594	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	0/1:0,2:29:2:1.00:2	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.
chr17	260299	rs4581766	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	0/1:0,2:29:2:1.00:2	./.	./.	./.
chr17	260318	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.
chr17	263294	rs35229416	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:4,3:30:7:0.429:2	0/1:0,5:30:5:1.00:2	./.	0/1:0,5:31:5:1.00:2	./.	./.	./.	0/1:0,11:32:11:1.00:2	0/1:0,6:28:6:1.00:2	0/1:4,7:31:11:0.636:2	./.
chr17	263367	rs35400518	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	./.	./.	0/1:8,3:32:11:0.273:2	0/1:0,9:27:9:1.00:2	./.	./.
chr17	263387	rs34825436	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,10:33:13:0.769:2	./.	./.	./.	0/1:24,6:31:30:0.200:2	./.	./.	./.
chr17	263417	rs113554843	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,19:31:25:0.760:2	./.	./.	./.	0/1:45,17:29:62:0.274:2	./.	./.	./.
chr17	263441	rs77314934	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,32:30:33:0.970:2	./.	./.	./.	0/1:58,28:30:86:0.326:2	0/1:0,13:30:13:1.00:2	./.	./.
chr17	263442	rs200834723	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,4:26:35:0.114:2	./.	./.	./.	0/1:84,4:31:88:0.045:2	0/1:12,3:31:15:0.200:2	./.	./.
chr17	263494	rs74991980	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,30:31:32:0.938:2	./.	./.	./.	0/1:55,49:31:104:0.471:2	0/1:0,29:32:29:1.00:2	./.	./.
chr17	263516	rs75627881	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,22:27:38:0.579:2	./.	./.	./.	0/1:67,28:29:95:0.295:2	0/1:11,28:27:39:0.718:2	./.	./.
chr17	263532	rs111890321	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,4:32:33:0.121:2	./.	0/1:37,37:30:74:0.500:2	./.	0/1:76,13:28:89:0.146:2	0/1:35,6:29:41:0.146:2	./.	./.
chr17	263562	rs76677042	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,3:31:21:0.143:2	./.	./.	./.	./.	./.	./.	./.
chr17	263606	rs180817296	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,9:30:47:0.191:2	./.	./.	./.
chr17	263613	rs184547508	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:30:40:0.100:2	./.	./.	./.
chr17	263615	rs75457484	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,4:29:39:0.103:2	./.	./.	./.
chr17	263622	rs76926791	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:15,18:29:33:0.545:2	0/1:12,10:28:22:0.455:2	./.	0/1:9,4:32:13:0.308:2	./.	./.	./.	0/1:3,30:29:33:0.909:2	0/1:21,4:28:25:0.160:2	0/1:18,15:27:33:0.455:2	./.
chr17	263652	rs111543298	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,4:25:19:0.211:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	293138	rs8069166	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,60:31:114:0.526:2	./.	./.	0/1:46,62:31:108:0.574:2	./.	./.	./.	./.
chr17	293274	rs76404864	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,15:31:29:0.517:2	./.	./.	0/1:12,11:31:23:0.478:2	./.	./.	./.	./.
chr17	424880	rs16953156	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,53:31:116:0.457:2	./.	./.	0/1:58,41:31:99:0.414:2	./.	./.	./.	./.
chr17	465775	rs2075443	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:96,71:32:167:0.425:2	0/1:40,38:32:78:0.487:2	./.	./.	./.	./.	0/1:94,66:32:160:0.413:2	0/1:100,96:32:196:0.490:2	0/1:112,87:33:199:0.437:2	0/1:101,67:32:168:0.399:2	0/1:104,88:32:192:0.458:2
chr17	526907	rs16954056	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,28:33:62:0.452:2	0/1:19,13:32:32:0.406:2	./.	0/1:29,33:31:62:0.532:2	0/1:25,23:31:48:0.479:2	./.	./.	./.	0/1:29,46:32:75:0.613:2	./.	./.
chr17	531411	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:30:70:0.057:2	./.	./.	./.
chr17	600735	rs4968100	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:38,29:31:67:0.433:2	0/1:25,16:31:41:0.390:2	./.	./.	./.	./.	0/1:40,26:31:66:0.394:2	0/1:50,36:31:86:0.419:2	0/1:46,28:31:74:0.378:2	./.	./.
chr17	613790	rs188298572	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,40:32:92:0.435:2	./.	./.	./.	./.	./.	./.	./.
chr17	617869	rs11558129	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,7:32:15:0.467:2	0/1:51,35:31:86:0.407:2	0/1:35,36:31:71:0.507:2	0/1:66,35:30:101:0.347:2	./.	0/1:45,60:31:105:0.571:2	./.	0/1:29,45:32:74:0.608:2	0/1:34,9:32:43:0.209:2
chr17	641096	rs199658320	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,15:14:136:0.110:2
chr17	643741	rs71357104	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:31:3:0.667:2	0/1:37,21:30:58:0.362:2	0/1:12,9:31:21:0.429:2	0/1:16,20:31:36:0.556:2	./.	0/1:21,12:31:33:0.364:2	./.	./.	0/1:24,22:32:46:0.478:2
chr17	648157	rs1045481	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,31:32:59:0.525:2	./.	./.	./.	0/1:0,30:31:30:1.00:2	./.
chr17	648186	rs7813	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,24:31:24:1.00:2	0/1:2,7:32:9:0.778:2	0/1:4,67:31:71:0.944:2	0/1:0,82:31:82:1.00:2	0/1:38,28:31:66:0.424:2	0/1:43,52:32:95:0.547:2	0/1:0,88:31:88:1.00:2	0/1:0,65:32:65:1.00:2	./.	0/1:0,59:32:59:1.00:2
chr17	648498	rs2740349	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:30:42:1.00:2	0/1:1,27:31:28:0.964:2	0/1:0,5:31:5:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,71:30:71:1.00:2	0/1:19,24:30:43:0.558:2	0/1:1,58:30:60:0.983:2	0/1:0,57:31:57:1.00:2	0/1:1,49:31:50:0.980:2	0/1:0,54:30:54:1.00:2
chr17	648664	rs191778127	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,13:30:29:0.448:2
chr17	648916	rs12942598	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,21:29:46:0.457:2	./.	./.	./.	./.	./.
chr17	649067	rs1062923	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:33:6:0.667:2	0/1:28,17:33:45:0.378:2	0/1:23,20:32:43:0.465:2	0/1:19,14:32:33:0.424:2	./.	0/1:34,17:33:51:0.333:2	./.	./.	0/1:32,35:32:67:0.522:2
chr17	649232	rs3744741	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:7,4:32:11:0.364:2	0/1:10,8:32:18:0.444:2	./.	./.	./.	./.	0/1:13,13:32:26:0.500:2	0/1:14,16:31:30:0.533:2	0/1:7,6:33:13:0.462:2	./.	./.
chr17	649505	rs4968104	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	./.	0/1:26,43:31:69:0.623:2	./.	./.	./.	0/1:1,48:31:49:0.980:2	./.
chr17	649547	rs910925	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,39:31:39:1.00:2	0/1:0,20:32:20:1.00:2	./.	0/1:0,56:32:56:1.00:2	0/1:0,49:31:49:1.00:2	0/1:35,19:30:54:0.352:2	0/1:23,29:32:52:0.558:2	0/1:0,54:33:54:1.00:2	0/1:0,49:33:49:1.00:2	./.	0/1:0,45:31:45:1.00:2
chr17	649935	rs2740348	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:33:24:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,36:33:36:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,34:32:34:1.00:2	0/1:23,15:32:38:0.395:2	0/1:0,41:33:41:1.00:2	0/1:0,52:34:52:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,45:33:45:1.00:2
chr17	650518	rs35696687	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,4:31:13:0.308:2	0/1:45,64:30:110:0.587:2	0/1:69,74:31:143:0.517:2	0/1:57,51:31:108:0.472:2	./.	0/1:78,77:31:155:0.497:2	./.	./.	0/1:55,56:30:111:0.505:2
chr17	651118	rs150160877	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,40:33:94:0.426:2	./.
chr17	673190	rs11663	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,21:31:57:0.368:2
chr17	680120	rs116051522	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:30:70:0.057:2	./.
chr17	685640	rs11546732	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:5,8:30:13:0.615:2	./.	./.	./.	./.	./.	0/1:3,8:31:11:0.727:2	0/1:6,5:31:11:0.455:2	0/1:4,3:32:7:0.429:2	./.	./.
chr17	685752	rs2249542	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,12:29:41:0.293:2	./.	./.	./.	0/1:0,24:30:24:1.00:2	./.
chr17	694847	rs34081574	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,59:32:112:0.527:2	./.	./.	./.	./.	./.	./.	./.
chr17	900502	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:32:93:0.043:2	./.	./.
chr17	970413	rs2262150	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,38:31:38:1.00:2	0/1:1,34:29:35:0.971:2
chr17	1183338	rs111587833	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,52:30:86:0.605:2	./.	0/1:0,75:31:76:1.00:2	./.
chr17	1183347	rs111701043	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,5:31:11:0.455:2	0/1:52,54:31:106:0.509:2	./.	./.	./.	./.	./.	./.	./.
chr17	1183354	rs6502774	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:32:71:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,11:32:11:1.00:2	0/1:57,55:33:112:0.491:2	0/1:0,103:31:103:1.00:2	0/1:1,100:32:101:0.990:2	0/1:0,102:32:102:1.00:2	0/1:0,98:33:98:1.00:2	0/1:67,64:33:131:0.489:2	0/1:53,29:32:83:0.354:2	0/1:0,78:32:78:1.00:2
chr17	1183464	rs6502776	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:31:47:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,12:30:12:1.00:2	0/1:48,44:31:92:0.478:2	0/1:0,59:30:59:1.00:2	0/1:1,64:30:65:0.985:2	0/1:0,54:30:54:1.00:2	0/1:0,92:30:92:1.00:2	0/1:52,31:30:83:0.373:2	0/1:1,53:30:54:0.981:2	0/1:0,66:30:66:1.00:2
chr17	1265272	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,6:29:77:0.078:2	0/1:49,5:31:54:0.093:2	0/1:70,4:30:74:0.054:2	./.	./.	./.
chr17	1265296	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,6:32:61:0.098:2	0/1:45,5:33:50:0.100:2	0/1:57,4:32:61:0.066:2	./.	./.	./.
chr17	1303323	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:104,13:13:117:0.111:2	./.	./.	./.	./.	./.	./.
chr17	1359232	rs141635865	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,9:26:14:0.643:2	./.	./.	./.	./.	./.	./.
chr17	1359363	rs2229075	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	0/1:17,15:29:32:0.469:2	./.	0/1:11,4:32:15:0.267:2	0/1:0,26:29:26:1.00:2	0/1:4,6:31:10:0.600:2	0/1:0,8:29:8:1.00:2	./.
chr17	1370542	rs2302458	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:24,23:32:47:0.489:2	0/1:19,13:31:32:0.406:2	./.	./.	./.	./.	./.	0/1:60,43:31:103:0.417:2	./.	0/1:36,22:32:58:0.379:2	./.
chr17	1371123	rs8072859	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,6:30:14:0.429:2	./.	./.	0/1:13,7:31:20:0.350:2	0/1:6,3:29:9:0.333:2	./.	0/1:7,4:28:11:0.364:2	0/1:1,12:29:13:0.923:2	0/1:14,6:31:20:0.300:2	0/1:0,20:30:20:1.00:2	./.
chr17	1373518	rs9905106	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,33:29:54:0.611:2	0/1:14,9:29:23:0.391:2	0/1:5,7:30:12:0.583:2	0/1:51,52:29:103:0.505:2	0/1:74,36:30:110:0.327:2	0/1:45,42:29:87:0.483:2	0/1:38,35:29:73:0.479:2	0/1:0,87:28:87:1.00:2	0/1:50,38:31:88:0.432:2	0/1:0,77:29:77:1.00:2	./.
chr17	1373612	rs8081370	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:32:22:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,3:31:3:1.00:2	0/1:17,13:30:30:0.433:2	0/1:0,37:30:37:1.00:2	0/1:0,27:31:27:1.00:2	0/1:9,12:31:21:0.571:2	0/1:0,40:31:40:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,26:31:26:1.00:2	0/1:14,7:29:21:0.333:2
chr17	1377943	rs2286873	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:29,41:30:70:0.586:2	0/1:25,18:31:43:0.419:2	./.	./.	0/1:121,63:28:184:0.342:2	0/1:1,108:29:109:0.991:2	0/1:89,71:30:160:0.444:2	0/1:72,90:30:163:0.556:2	0/1:60,34:30:94:0.362:2	0/1:45,42:29:87:0.483:2	0/1:38,28:28:66:0.424:2
chr17	1378168	rs9897989	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:27,7:30:34:0.206:2	0/1:5,5:32:10:0.500:2	./.	./.	0/1:14,11:32:25:0.440:2	0/1:10,8:29:18:0.444:2	./.	./.	./.	./.	./.
chr17	1378169	rs9903846	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:26,7:30:33:0.212:2	0/1:5,5:31:10:0.500:2	./.	./.	0/1:15,11:30:26:0.423:2	0/1:11,8:30:19:0.421:2	./.	./.	./.	./.	./.
chr17	1384066	rs4790518	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:28:41:1.00:2	0/1:1,18:28:19:0.947:2	0/1:0,6:29:6:1.00:2	0/1:0,57:29:57:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,58:28:58:1.00:2	0/1:0,62:29:62:1.00:2	0/1:0,54:27:54:1.00:2	0/1:0,51:29:51:1.00:2	0/1:0,40:27:40:1.00:2	0/1:0,39:28:39:1.00:2
chr17	1401361	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,4:32:77:0.052:2	./.	./.	./.	./.	./.	./.	./.
chr17	1424948	rs2277669	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,25:34:44:0.568:2	0/1:18,14:32:32:0.438:2	0/1:2,4:33:6:0.667:2	0/1:31,23:32:54:0.426:2	0/1:30,27:31:57:0.474:2	0/1:0,102:32:102:1.00:2	0/1:0,71:32:71:1.00:2	0/1:50,39:32:90:0.438:2	0/1:1,81:33:82:0.988:2	./.	0/1:0,77:33:77:1.00:2
chr17	1438560	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,4:31:148:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr17	1456318	rs2230463	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,54:29:104:0.519:2	./.	./.	./.	./.	./.	./.
chr17	1456342	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,39:32:87:0.453:2
chr17	1494567	rs12953268	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:5,7:32:12:0.583:2	0/1:1,5:32:6:0.833:2	./.	./.	0/1:0,22:31:22:1.00:2	./.	0/1:1,3:32:4:0.750:2	0/1:2,9:30:11:0.818:2	0/1:3,4:32:7:0.571:2	0/1:2,13:32:15:0.867:2	0/1:0,5:34:5:1.00:2
chr17	1494943	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,21:32:52:0.404:2	./.	./.	./.	./.	./.
chr17	1516480	rs7219369	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:30:75:1.00:2	0/1:0,61:30:61:1.00:2	0/1:0,11:29:11:1.00:2	0/1:1,96:30:97:0.990:2	0/1:0,59:30:59:1.00:2	0/1:0,89:30:89:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,104:30:104:1.00:2	0/1:0,119:30:119:1.00:2	0/1:0,92:30:92:1.00:2	0/1:0,130:29:131:1.00:2
chr17	1518346	rs72820352	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,31:32:79:0.392:2	./.	./.	./.	./.	./.
chr17	1520045	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:32:70:0.057:2	./.	./.
chr17	1538546	rs4790250	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,15:27:15:1.00:2	0/1:0,12:29:12:1.00:2	0/1:0,5:26:5:1.00:2	0/1:0,25:27:25:1.00:2	0/1:0,34:25:34:1.00:2	0/1:0,40:27:40:1.00:2	0/1:0,12:27:12:1.00:2	0/1:0,24:27:24:1.00:2	0/1:0,35:29:35:1.00:2	0/1:0,15:26:15:1.00:2	0/1:0,13:29:13:1.00:2
chr17	1538628	rs3744644	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,7:27:7:1.00:2	0/1:0,5:26:5:1.00:2	./.	0/1:0,14:29:14:1.00:2	0/1:0,7:29:7:1.00:2	0/1:1,15:28:16:0.938:2	0/1:0,7:28:7:1.00:2	0/1:0,14:26:14:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,14:26:14:1.00:2	0/1:0,7:28:7:1.00:2
chr17	1538669	rs36108564	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,6:34:17:0.353:2	./.
chr17	1540027	rs34297715	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,24:29:43:0.558:2	./.	./.
chr17	1540106	rs34849297	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,51:31:90:0.567:2	./.	./.	./.	./.	./.	0/1:33,36:31:69:0.522:2	./.
chr17	1542153	rs2272012	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:29:103:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,28:29:28:1.00:2	0/1:76,75:30:151:0.497:2	0/1:41,63:30:104:0.606:2	0/1:78,65:30:143:0.455:2	./.	./.	./.	0/1:54,54:30:109:0.500:2	0/1:55,43:31:99:0.439:2
chr17	1542190	rs2272011	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,80:30:81:0.988:2	0/1:0,50:30:50:1.00:2	0/1:0,16:30:16:1.00:2	0/1:64,54:31:118:0.458:2	0/1:33,51:31:84:0.607:2	0/1:54,47:30:101:0.465:2	./.	./.	./.	0/1:35,40:31:75:0.533:2	0/1:45,33:31:78:0.423:2
chr17	1543934	rs139336621	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,15:32:36:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	1548973	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,13:30:23:0.565:2	0/1:9,7:32:16:0.438:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	1554770	rs1802491	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:30:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	1578939	rs33965342	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,11:30:16:0.688:2	./.	./.	./.	0/1:52,37:31:89:0.416:2	0/1:0,92:31:92:1.00:2	0/1:38,54:32:92:0.587:2	./.	./.
chr17	1580929	rs11078565	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,29:30:64:0.453:2	0/1:0,75:31:75:1.00:2	0/1:34,19:33:53:0.358:2	./.	./.
chr17	1584324	rs7503397	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,11:30:23:0.478:2	./.	./.	./.	0/1:46,38:29:84:0.452:2	0/1:4,99:30:103:0.961:2	0/1:67,58:30:125:0.464:2	./.	./.
chr17	1585130	rs11559305	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,5:29:19:0.263:2	./.	./.	./.	0/1:51,41:33:92:0.446:2	0/1:0,94:32:94:1.00:2	0/1:40,42:33:82:0.512:2	./.	./.
chr17	1628683	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:33:58:0.069:2	./.	./.
chr17	1629775	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:31:129:0.031:2	./.	./.	./.	./.	./.
chr17	1629969	rs80035274	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,29:27:60:0.483:2	0/1:25,20:29:45:0.444:2	0/1:30,21:27:51:0.412:2	./.	./.	./.	0/1:13,11:28:24:0.458:2
chr17	1630208	rs57207396	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,17:33:35:0.486:2	0/1:7,7:32:14:0.500:2	./.	./.	./.	./.	./.	./.	0/1:32,16:33:48:0.333:2	./.	./.
chr17	1630395	rs59643265	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,16:30:40:0.410:2	0/1:9,8:28:17:0.471:2	./.	./.	./.	./.	./.	./.	0/1:23,20:29:44:0.465:2	./.	./.
chr17	1630584	rs7221974	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,11:32:20:0.550:2	./.	./.	./.	./.	./.	./.	./.	0/1:7,10:34:17:0.588:2	./.	./.
chr17	1630992	rs9912287	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,8:30:20:0.400:2	0/1:45,62:30:107:0.579:2	./.	./.	./.	0/1:68,66:29:134:0.493:2	./.	./.	0/1:46,32:29:78:0.410:2
chr17	1631439	rs62090046	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,39:30:74:0.527:2	./.	./.	./.
chr17	1631785	rs151330612	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,70:30:134:0.522:2	./.	./.	./.	./.	./.	./.
chr17	1634104	rs12150338	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,20:32:35:0.571:2
chr17	1636934	rs3809870	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,8:30:16:0.500:2	./.	./.	./.	0/1:1,5:29:6:0.833:2	./.	./.
chr17	1636945	rs146469235	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,5:32:9:0.556:2	./.	./.	0/1:0,35:32:35:1.00:2	./.
chr17	1636950	rs11657394	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:7,12:30:19:0.632:2	./.	./.	0/1:12,13:31:25:0.520:2	./.	./.	./.	0/1:5,7:31:12:0.583:2	./.	./.	./.
chr17	1637074	rs3809871	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,18:31:19:0.947:2	0/1:0,13:31:14:1.00:2	0/1:13,11:30:24:0.458:2	./.	0/1:14,9:31:23:0.391:2	./.	0/1:13,4:30:17:0.235:2
chr17	1637302	rs3809872	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,22:30:36:0.611:2	0/1:16,11:32:27:0.407:2	0/1:0,4:33:4:1.00:2	0/1:21,20:32:42:0.488:2	0/1:0,47:33:47:1.00:2	0/1:0,55:32:55:1.00:2	0/1:22,9:32:31:0.290:2	0/1:27,31:33:58:0.534:2	0/1:25,24:34:49:0.490:2	./.	0/1:0,36:33:36:1.00:2
chr17	1637458	rs8065251	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:3,6:30:9:0.667:2	./.	./.	0/1:7,10:31:17:0.588:2	./.	./.	./.	0/1:1,6:32:7:0.857:2	./.	./.	0/1:1,3:31:4:0.750:2
chr17	1639458	rs11549259	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,9:30:22:0.409:2	0/1:10,4:30:14:0.286:2	0/1:0,5:31:5:1.00:2	0/1:20,14:30:34:0.412:2	0/1:0,21:30:21:1.00:2	0/1:0,38:29:38:1.00:2	0/1:13,9:30:22:0.409:2	0/1:15,15:30:30:0.500:2	0/1:7,9:30:16:0.563:2	./.	0/1:0,16:29:16:1.00:2
chr17	1640709	rs1045794	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,10:31:19:0.526:2	./.	0/1:92,92:32:184:0.500:2	0/1:74,68:31:142:0.479:2	0/1:85,84:32:169:0.497:2	./.	./.	./.	0/1:30,39:32:69:0.565:2
chr17	1640793	rs8077638	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,46:32:98:0.469:2	0/1:51,27:31:78:0.346:2	0/1:18,14:32:32:0.438:2	0/1:85,102:31:187:0.545:2	./.	./.	./.	0/1:95,92:32:187:0.492:2	./.	./.	0/1:57,56:32:113:0.496:2
chr17	1648294	rs2070862	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:32:6:0.500:2	./.	0/1:31,46:31:77:0.597:2	0/1:28,20:30:48:0.417:2	0/1:25,36:30:61:0.590:2	./.	./.	./.	0/1:35,20:31:55:0.364:2
chr17	1648349	rs370280422	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,13:31:41:0.317:2	./.	./.	./.	./.	./.	./.
chr17	1648502	rs2070863	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:8,14:32:22:0.636:2	0/1:7,4:33:11:0.364:2	0/1:0,3:32:3:1.00:2	0/1:14,9:32:23:0.391:2	./.	./.	./.	0/1:7,10:31:17:0.588:2	./.	./.	0/1:5,9:32:14:0.643:2
chr17	1648653	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,4:33:61:0.066:2	./.	./.	./.	./.	./.	./.	./.
chr17	1649022	rs35259159	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,12:33:35:0.343:2	0/1:28,17:32:45:0.378:2	./.	./.	./.	./.	./.
chr17	1657653	rs1057335	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:47,36:33:83:0.434:2	0/1:17,22:32:39:0.564:2	./.	./.	./.	./.	./.	0/1:58,55:32:113:0.487:2	./.	./.	0/1:46,49:33:95:0.516:2
chr17	1657741	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,18:28:34:0.529:2	./.	./.	./.	./.	./.	./.
chr17	1673276	rs1136287	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,39:31:69:0.565:2	0/1:6,26:31:32:0.813:2	0/1:0,13:31:13:1.00:2	0/1:40,32:31:73:0.444:2	0/1:96,75:31:171:0.439:2	0/1:47,61:31:108:0.565:2	0/1:1,147:31:148:0.993:2	0/1:78,88:31:166:0.530:2	0/1:63,47:32:110:0.427:2	0/1:0,67:32:68:1.00:2	0/1:34,39:31:74:0.534:2
chr17	1674429	rs8074840	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:25,17:28:42:0.405:2	0/1:16,11:29:27:0.407:2	./.	0/1:29,26:30:55:0.473:2	./.	0/1:27,21:29:48:0.438:2	./.	0/1:29,18:27:47:0.383:2	0/1:27,23:28:50:0.460:2	./.	0/1:33,37:28:70:0.529:2
chr17	1680002	rs6828	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,40:30:81:0.494:2	0/1:22,19:28:41:0.463:2	0/1:4,7:30:11:0.636:2	0/1:58,51:29:109:0.468:2	0/1:55,40:30:95:0.421:2	0/1:58,52:30:110:0.473:2	0/1:51,49:29:100:0.490:2	0/1:0,120:29:120:1.00:2	0/1:63,60:30:123:0.488:2	0/1:0,87:30:87:1.00:2	0/1:0,101:29:101:1.00:2
chr17	1684605	rs58337165	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:33:144:0.028:2	./.	./.
chr17	1686410	rs9902398	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,30:32:52:0.577:2	0/1:9,24:33:33:0.727:2	./.	0/1:28,23:33:51:0.451:2	0/1:16,9:32:25:0.360:2	0/1:17,27:32:44:0.614:2	0/1:18,21:33:39:0.538:2	0/1:0,48:31:48:1.00:2	0/1:32,28:33:60:0.467:2	0/1:1,46:32:47:0.979:2	0/1:0,64:32:64:1.00:2
chr17	1690752	rs11549830	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,63:32:140:0.450:2	0/1:33,31:31:65:0.484:2	./.	./.	./.	0/1:106,89:30:195:0.456:2	./.	0/1:123,72:31:196:0.369:2	0/1:107,80:32:187:0.428:2	./.	0/1:88,66:31:154:0.429:2
chr17	1703543	rs3809875	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,65:30:114:0.570:2	0/1:34,41:29:75:0.547:2	0/1:14,9:31:23:0.391:2	0/1:1,161:30:162:0.994:2	./.	0/1:77,72:29:149:0.483:2	0/1:93,55:29:148:0.372:2	./.	0/1:93,85:30:178:0.478:2	./.	0/1:80,73:29:153:0.477:2
chr17	1703982	rs9913923	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,86:32:199:0.432:2	./.	./.	0/1:93,102:33:195:0.523:2	./.	0/1:101,89:33:190:0.468:2
chr17	1704296	rs7224496	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:43,36:31:79:0.456:2	0/1:29,26:31:55:0.473:2	./.	./.	0/1:58,42:29:100:0.420:2	0/1:56,46:30:102:0.451:2	0/1:50,24:31:74:0.324:2	0/1:68,48:31:116:0.414:2	0/1:68,49:32:117:0.419:2	0/1:0,83:31:83:1.00:2	./.
chr17	1707921	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:33:95:0.042:2	./.
chr17	1731268	rs8067660	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,58:32:58:1.00:2	0/1:0,30:33:30:1.00:2	./.	0/1:0,48:33:48:1.00:2	0/1:21,18:30:39:0.462:2	0/1:2,39:32:41:0.951:2	0/1:0,39:33:39:1.00:2	0/1:27,27:32:54:0.500:2	0/1:0,51:33:51:1.00:2	0/1:0,33:32:33:1.00:2	0/1:28,35:32:63:0.556:2
chr17	1733399	rs5030749	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,13:33:13:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,20:32:20:1.00:2	0/1:10,9:31:19:0.474:2	0/1:0,44:32:44:1.00:2	0/1:0,11:33:11:1.00:2	0/1:22,6:32:28:0.214:2	0/1:0,17:34:17:1.00:2	0/1:0,28:32:28:1.00:2	0/1:8,11:30:19:0.579:2
chr17	1782952	rs5030755	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,45:30:90:0.500:2	./.	./.	0/1:68,34:31:102:0.333:2	./.	./.
chr17	1782957	rs2230930	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,20:33:79:0.253:2	./.	./.	0/1:48,44:33:92:0.478:2	./.	./.	0/1:44,35:32:79:0.443:2
chr17	1795180	rs2230931	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,16:29:35:0.457:2	0/1:10,5:30:15:0.333:2	0/1:0,3:29:3:1.00:2	0/1:1,41:30:42:0.976:2	./.	./.	0/1:11,12:30:23:0.522:2	./.	./.	./.	./.
chr17	1840357	rs74644325	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,7:31:12:0.583:2	./.	./.	./.	./.	./.	./.
chr17	1840468	rs9903800	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,5:31:15:0.333:2	0/1:6,8:32:14:0.571:2	0/1:0,7:31:7:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,20:31:20:1.00:2	0/1:17,19:31:36:0.528:2	0/1:0,37:31:37:1.00:2	0/1:15,12:32:27:0.444:2	0/1:0,20:30:20:1.00:2	0/1:0,22:32:22:1.00:2
chr17	1939971	rs61753099	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:87,61:30:148:0.412:2	./.	./.	0/1:82,78:31:160:0.488:2	./.	./.	./.
chr17	1940232	rs1131600	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,17:32:37:0.459:2	./.	0/1:28,38:33:66:0.576:2	./.	0/1:21,15:33:36:0.417:2	./.	./.
chr17	1943888	rs2236375	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,62:30:131:0.473:2	0/1:52,29:28:81:0.358:2	0/1:0,29:28:29:1.00:2	0/1:91,72:29:163:0.442:2	0/1:1,160:29:161:0.994:2	./.	0/1:93,70:29:163:0.429:2	0/1:114,53:29:167:0.317:2	0/1:0,171:31:171:1.00:2	0/1:0,119:30:119:1.00:2	./.
chr17	1953297	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,5:31:8:0.625:2	./.	./.	./.	./.	./.
chr17	1960381	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	./.
chr17	1962394	rs72634003	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:27:8:1.00:2	./.	./.	./.	./.	./.	./.	0/1:14,19:28:33:0.576:2	./.
chr17	2091765	rs903160	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,34:30:59:0.576:2	0/1:22,5:32:27:0.185:2	./.	./.	./.	0/1:0,87:31:88:1.00:2	./.	./.	./.	./.	0/1:32,24:31:56:0.429:2
chr17	2186100	rs749240	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:94,70:31:164:0.427:2	0/1:48,44:32:92:0.478:2	./.	0/1:95,97:31:192:0.505:2	0/1:87,53:31:140:0.379:2	0/1:1,184:31:185:0.995:2	./.	0/1:94,95:31:189:0.503:2	0/1:100,91:32:191:0.476:2	0/1:77,82:31:159:0.516:2	0/1:94,97:32:191:0.508:2
chr17	2202660	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,4:31:33:0.121:2
chr17	2202943	rs216196	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,16:30:16:1.00:2	0/1:89,108:30:197:0.548:2	./.	./.	0/1:79,84:29:163:0.515:2	./.	./.	0/1:93,83:30:176:0.472:2	0/1:90,75:30:165:0.455:2
chr17	2203025	rs1885987	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:99,62:32:161:0.385:2	0/1:58,30:31:88:0.341:2	./.	./.	0/1:85,51:31:136:0.375:2	./.	0/1:98,63:31:161:0.391:2	0/1:112,76:31:188:0.404:2	0/1:96,69:32:165:0.418:2	./.	./.
chr17	2203167	rs216195	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:32:10:1.00:2	0/1:88,68:32:157:0.436:2	./.	./.	0/1:55,65:32:120:0.542:2	./.	./.	0/1:33,16:32:49:0.327:2	0/1:67,60:32:127:0.472:2
chr17	2203175	rs1885986	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:43,44:31:87:0.506:2	0/1:24,26:32:50:0.520:2	./.	./.	0/1:79,52:32:131:0.397:2	./.	0/1:69,49:33:118:0.415:2	0/1:83,50:32:133:0.376:2	0/1:62,42:31:104:0.404:2	./.	./.
chr17	2203348	rs216194	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,14:31:50:0.280:2	0/1:16,9:30:25:0.360:2	0/1:0,4:31:4:1.00:2	0/1:33,24:29:57:0.421:2	0/1:11,13:29:24:0.542:2	./.	0/1:0,14:30:14:1.00:2	0/1:39,20:29:59:0.339:2	0/1:27,7:32:34:0.206:2	0/1:21,12:30:33:0.364:2	0/1:30,15:27:45:0.333:2
chr17	2203453	rs216193	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,9:30:30:0.300:2	0/1:6,9:27:15:0.600:2	0/1:0,5:29:5:1.00:2	0/1:17,14:30:31:0.452:2	0/1:12,11:25:23:0.478:2	./.	0/1:0,15:29:15:1.00:2	0/1:15,18:31:33:0.545:2	0/1:22,16:31:38:0.421:2	0/1:18,14:28:32:0.438:2	0/1:15,21:29:36:0.583:2
chr17	2264966	rs201869831	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,48:32:84:0.571:2	./.	./.	./.	./.	./.	./.	./.
chr17	2266799	rs745400	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,20:30:20:1.00:2	0/1:46,55:31:101:0.545:2	./.	./.	0/1:27,21:31:48:0.438:2	0/1:59,39:31:98:0.398:2	./.	0/1:30,19:28:49:0.388:2	0/1:33,14:31:47:0.298:2
chr17	2266812	rs2003968	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,23:30:23:1.00:2	0/1:53,63:30:116:0.543:2	./.	./.	0/1:34,42:31:76:0.553:2	0/1:70,47:29:117:0.402:2	./.	0/1:35,20:29:55:0.364:2	0/1:33,22:30:55:0.400:2
chr17	2268311	rs2248821	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:32:4:1.00:2	0/1:15,9:32:24:0.375:2	./.	./.	0/1:19,12:31:31:0.387:2	0/1:21,27:32:48:0.563:2	./.	0/1:6,14:33:20:0.700:2	0/1:7,12:33:19:0.632:2
chr17	2275734	rs3213712	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,42:28:93:0.452:2	0/1:49,41:27:90:0.456:2	./.	./.	0/1:37,37:28:74:0.500:2
chr17	2275738	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:31:100:0.040:2	./.	./.	./.	./.	./.
chr17	2276330	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:150,4:31:154:0.026:2	./.	./.	./.	./.	./.	./.
chr17	2278872	rs61739394	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,14:32:23:0.609:2
chr17	2290222	rs61733100	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,68:31:134:0.507:2	./.	./.	./.
chr17	2290345	rs61742229	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,7:31:10:0.700:2	./.	./.	./.	./.
chr17	2297571	rs140207094	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,11:29:17:0.647:2	0/1:12,8:31:20:0.400:2	./.	0/1:16,24:32:40:0.600:2	0/1:8,11:30:19:0.579:2	./.	./.	./.
chr17	2298615	rs7213000	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,9:28:25:0.391:2	./.	./.	./.	0/1:14,10:28:24:0.417:2	./.	./.	./.
chr17	2318550	rs4613098	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,25:32:67:0.373:2	./.	./.	./.	0/1:39,40:33:79:0.506:2
chr17	2323517	rs17834783	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,7:32:26:0.269:2	./.
chr17	2324109	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:74,4:28:78:0.051:2	./.	./.	./.	./.	./.	./.
chr17	2541557	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,6:32:109:0.056:2	0/1:160,5:32:165:0.030:2	0/1:140,5:34:145:0.034:2	./.	./.
chr17	2568671	rs374766360	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,4:33:26:0.154:2	./.	./.	./.	./.	./.	./.	./.
chr17	2568677	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,4:33:28:0.143:2	./.	./.	./.	./.	./.	./.	./.
chr17	2568705	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,4:29:31:0.129:2	./.	./.	./.	./.	./.	./.	./.
chr17	2570410	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:33:92:0.044:2	./.	./.
chr17	2570424	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:128,4:32:132:0.030:2	./.	./.	./.	./.	./.	0/1:84,4:33:88:0.045:2	./.
chr17	2570428	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:133,4:32:137:0.029:2	./.	./.	./.	./.	./.	0/1:89,4:32:93:0.043:2	./.
chr17	2595133	rs149829712	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,28:30:62:0.452:2	./.	./.	./.	./.	./.	./.
chr17	2595964	rs2302199	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,9:32:23:0.391:2	0/1:7,3:33:10:0.300:2	0/1:0,8:31:8:1.00:2	0/1:11,20:31:31:0.645:2	0/1:19,33:29:52:0.635:2	0/1:0,62:31:62:1.00:2	0/1:32,5:31:37:0.135:2	0/1:0,51:30:51:1.00:2	0/1:13,20:31:33:0.606:2	0/1:0,42:31:42:1.00:2	0/1:7,7:30:14:0.500:2
chr17	2600186	rs11078312	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,47:31:105:0.448:2
chr17	2600215	rs143605055	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,54:32:101:0.535:2	0/1:39,44:31:83:0.530:2	./.
chr17	2601420	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,3:33:34:0.088:2	./.
chr17	2606715	rs1065479	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,35:30:66:0.538:2	0/1:21,13:30:34:0.382:2	./.	0/1:48,58:29:106:0.547:2	0/1:90,78:29:168:0.464:2	./.	0/1:2,174:29:176:0.989:2	0/1:152,6:29:158:0.038:2	0/1:47,50:30:97:0.515:2	./.	0/1:27,22:30:49:0.449:2
chr17	2867256	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:32:133:0.030:2	./.	./.	./.	./.	./.
chr17	2868935	rs12950923	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,29:33:58:0.500:2	0/1:12,21:33:33:0.636:2	0/1:0,10:33:10:1.00:2	0/1:0,83:33:83:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,83:32:83:1.00:2	0/1:1,80:33:81:0.988:2	0/1:0,101:32:101:1.00:2	0/1:0,64:34:64:1.00:2	0/1:39,28:33:67:0.418:2	0/1:0,76:33:76:1.00:2
chr17	2883588	rs17762452	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,88:32:88:1.00:2	0/1:0,51:31:51:1.00:2	./.	./.	0/1:89,58:31:147:0.395:2	./.	./.	0/1:102,69:31:171:0.404:2	0/1:76,69:32:145:0.476:2	0/1:63,61:32:124:0.492:2	0/1:69,66:32:135:0.489:2
chr17	2884545	rs7208690	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,7:33:21:0.333:2	0/1:88,63:31:151:0.417:2	./.	0/1:70,51:32:121:0.421:2	./.	./.	./.	0/1:61,65:32:126:0.516:2	./.
chr17	2908731	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:31:140:0.029:2	./.	./.	./.	./.
chr17	2929392	rs55904912	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,39:33:83:0.470:2	0/1:41,30:33:71:0.423:2	0/1:7,3:30:10:0.300:2	0/1:65,54:32:119:0.454:2	0/1:40,40:33:80:0.500:2	./.	./.	./.	0/1:71,51:33:122:0.418:2	0/1:45,55:33:100:0.550:2	./.
chr17	2929674	rs12941934	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,36:30:85:0.424:2	0/1:34,28:30:62:0.452:2	0/1:7,8:30:15:0.533:2	0/1:45,58:29:103:0.563:2	0/1:69,53:30:122:0.434:2	./.	./.	./.	0/1:77,39:30:116:0.336:2	0/1:58,43:29:102:0.426:2	0/1:52,28:29:80:0.350:2
chr17	2930339	rs4790115	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:92,73:32:165:0.442:2	0/1:41,56:32:97:0.577:2	0/1:17,19:31:36:0.528:2	0/1:99,85:31:184:0.462:2	0/1:99,93:31:193:0.484:2	./.	./.	./.	0/1:110,79:33:189:0.418:2	0/1:82,66:32:148:0.446:2	./.
chr17	2965978	rs370377496	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:120,39:31:159:0.245:2	0/1:77,30:31:107:0.280:2	./.	0/1:153,18:32:171:0.105:2	./.	0/1:163,15:31:178:0.084:2	./.	0/1:100,42:32:142:0.296:2	0/1:112,29:34:141:0.206:2	0/1:138,13:31:151:0.086:2	./.
chr17	2966032	rs202049082	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,127:32:181:0.702:2	0/1:49,82:32:131:0.626:2	0/1:15,4:32:19:0.211:2	0/1:95,89:32:184:0.484:2	0/1:36,30:32:67:0.455:2	0/1:93,83:32:176:0.472:2	0/1:88,46:31:134:0.343:2	0/1:112,78:32:190:0.411:2	0/1:52,116:32:169:0.690:2	0/1:26,137:32:163:0.840:2	0/1:126,52:32:178:0.292:2
chr17	2966064	rs200196918	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:159,30:31:189:0.159:2	0/1:116,20:31:136:0.147:2	./.	./.	./.	0/1:148,47:31:195:0.241:2	./.	./.	./.	./.	./.
chr17	2966154	rs145256155	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,31:33:179:0.173:2	0/1:154,34:33:188:0.181:2	./.	./.	./.	0/1:162,32:31:194:0.165:2	./.	./.	./.	./.	./.
chr17	2966173	rs61752193	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:106,88:29:194:0.454:2	0/1:109,76:28:185:0.411:2	./.	0/1:154,36:29:191:0.189:2	./.	0/1:161,32:29:193:0.166:2	./.	0/1:141,57:29:198:0.288:2	0/1:118,78:31:196:0.398:2	0/1:153,43:30:196:0.219:2	./.
chr17	2966191	rs61752194	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:106,80:31:186:0.430:2	0/1:107,70:32:177:0.395:2	./.	0/1:154,32:32:186:0.172:2	./.	0/1:155,25:31:180:0.139:2	./.	0/1:140,56:32:196:0.286:2	0/1:127,67:33:194:0.345:2	0/1:151,42:32:193:0.218:2	./.
chr17	2966273	rs2676567	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:96,90:31:186:0.484:2	0/1:109,67:31:176:0.381:2	./.	0/1:142,45:30:187:0.241:2	./.	0/1:133,65:31:198:0.328:2	./.	0/1:105,87:31:192:0.453:2	0/1:115,82:32:197:0.416:2	0/1:129,63:31:192:0.328:2	./.
chr17	2966308	rs2855605	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:88,101:31:189:0.534:2	0/1:104,80:31:184:0.435:2	./.	0/1:141,56:31:197:0.284:2	./.	0/1:127,67:31:194:0.345:2	./.	0/1:106,83:32:189:0.439:2	0/1:105,81:32:186:0.435:2	0/1:124,58:32:182:0.319:2	./.
chr17	2966525	rs140876889	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:185,5:32:190:0.026:2	0/1:182,7:31:189:0.037:2	./.	0/1:182,7:30:190:0.037:2	./.	./.	./.	0/1:187,7:31:194:0.036:2	0/1:182,13:32:195:0.067:2	./.	./.
chr17	2966851	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:29:102:0.039:2	./.	./.	./.	./.
chr17	2966871	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:34:108:0.037:2	./.	./.	./.	./.
chr17	2966888	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:88,5:34:93:0.054:2	./.	./.	0/1:110,14:32:124:0.113:2	./.	./.	./.	0/1:149,16:31:165:0.097:2	0/1:78,15:34:93:0.161:2	0/1:46,8:32:54:0.148:2	./.
chr17	2966912	rs201120660	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,32:32:71:0.451:2	./.	./.	./.	./.
chr17	2995572	rs4300683	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,46:32:99:0.465:2	0/1:18,15:31:33:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	2995943	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,4:31:45:0.089:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	2995966	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,4:30:45:0.089:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	2995994	rs769424	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,88:29:187:0.471:2	0/1:90,74:30:165:0.451:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	2996116	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,5:31:192:0.026:2	./.	./.	0/1:186,4:32:190:0.021:2
chr17	2996156	rs147499202	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,86:30:176:0.489:2	0/1:63,48:31:111:0.432:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	2996173	rs140099014	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,6:30:187:0.032:2	./.	./.	./.	./.
chr17	2996217	rs769423	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,7:33:187:0.037:2	./.	./.	./.	./.
chr17	3100827	rs2241093	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:30:5:0.800:2	./.	0/1:0,26:30:26:1.00:2	0/1:16,21:29:37:0.568:2	0/1:13,15:31:28:0.536:2	./.	0/1:25,24:30:49:0.490:2	0/1:17,17:31:34:0.500:2	./.
chr17	3101026	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:34:195:0.026:2
chr17	3101037	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,5:29:185:0.027:2
chr17	3101076	rs2241092	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,172:33:172:1.00:2	0/1:0,143:33:143:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,184:33:184:1.00:2	0/1:0,179:32:179:1.00:2	0/1:0,179:32:179:1.00:2	0/1:0,181:33:181:1.00:2	0/1:0,182:33:184:1.00:2	0/1:1,173:33:174:0.994:2	0/1:1,174:32:175:0.994:2	0/1:0,158:32:159:1.00:2
chr17	3101578	rs2241091	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:30:9:1.00:2	./.	0/1:0,108:31:108:1.00:2	0/1:57,56:31:113:0.496:2	0/1:81,56:31:137:0.409:2	./.	0/1:59,47:32:106:0.443:2	0/1:48,46:32:94:0.489:2	./.
chr17	3101590	rs2469791	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:75,48:33:123:0.390:2	0/1:38,29:32:67:0.433:2	./.	0/1:46,76:32:122:0.623:2	./.	./.	./.	0/1:2,123:32:125:0.984:2	0/1:47,56:33:103:0.544:2	0/1:41,48:33:89:0.539:2	0/1:67,72:33:139:0.518:2
chr17	3101691	rs12150427	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:32:10:1.00:2	./.	0/1:0,48:32:48:1.00:2	0/1:23,37:32:60:0.617:2	0/1:28,33:31:61:0.541:2	./.	0/1:34,26:33:60:0.433:2	0/1:22,18:32:40:0.450:2	./.
chr17	3119008	rs4325604	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,135:33:135:1.00:2	0/1:1,81:32:82:0.988:2	0/1:0,11:32:11:1.00:2	0/1:0,123:32:123:1.00:2	0/1:76,49:33:125:0.392:2	0/1:1,119:32:120:0.992:2	0/1:1,124:32:125:0.992:2	0/1:0,179:32:179:1.00:2	0/1:0,162:33:162:1.00:2	0/1:88,67:33:155:0.432:2	0/1:85,63:32:148:0.426:2
chr17	3119128	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:32:177:0.023:2	./.	./.	./.	./.
chr17	3119139	rs113780617	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:33:182:0.022:2	./.	./.	./.	./.
chr17	3119397	rs769425	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,66:31:136:0.485:2	0/1:30,46:32:76:0.605:2	./.	./.	./.	0/1:71,43:30:114:0.377:2	./.	./.	./.	./.	./.
chr17	3119611	rs17762735	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,70:32:132:0.530:2	0/1:39,34:32:73:0.466:2	./.	./.	./.	0/1:67,81:31:148:0.547:2	./.	./.	./.	./.	./.
chr17	3119673	rs769426	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:69,46:30:115:0.400:2	0/1:30,33:29:63:0.524:2	./.	0/1:89,61:30:150:0.407:2	./.	./.	./.	0/1:2,116:30:118:0.983:2	0/1:1,101:31:102:0.990:2	0/1:59,42:28:101:0.416:2	./.
chr17	3119767	rs769427	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:36,32:32:68:0.471:2	0/1:18,9:32:27:0.333:2	./.	0/1:1,58:31:59:0.983:2	./.	./.	0/1:40,24:31:64:0.375:2	0/1:0,76:31:76:1.00:2	0/1:0,69:31:69:1.00:2	0/1:32,22:31:54:0.407:2	0/1:52,35:31:87:0.402:2
chr17	3181326	rs202113738	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,32:30:60:0.533:2	./.
chr17	3181384	rs769434	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,30:31:61:0.492:2	0/1:31,37:32:68:0.544:2	./.	./.	./.	0/1:28,28:32:56:0.500:2	0/1:44,60:31:104:0.577:2
chr17	3181555	rs2013809	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:60,70:29:130:0.538:2	0/1:36,40:28:76:0.526:2	./.	0/1:91,79:29:170:0.465:2	./.	0/1:84,73:28:157:0.465:2	./.	./.	./.	./.	./.
chr17	3181662	rs9901356	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:99,70:29:169:0.414:2	0/1:70,39:28:109:0.358:2	./.	0/1:110,76:29:186:0.409:2	./.	0/1:110,72:29:182:0.396:2	./.	./.	./.	./.	./.
chr17	3181757	rs369943585	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:34:191:0.021:2	./.
chr17	3181836	.	G	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:156,22:31:179:0.124:2	0/1:164,22:31:187:0.118:2	./.	0/1:169,25:29:194:0.129:2	0/1:125,67:30:192:0.349:2	0/1:160,33:30:193:0.171:2	0/1:170,22:31:192:0.115:2	0/1:129,57:30:187:0.306:2	0/1:165,24:33:189:0.127:2	0/1:175,18:30:193:0.093:2	0/1:157,27:30:184:0.147:2
chr17	3182005	rs200048826	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:89,89:31:178:0.500:2	0/1:106,81:31:187:0.433:2	0/1:45,40:30:85:0.471:2	0/1:98,80:30:178:0.449:2	0/1:109,87:29:196:0.444:2	0/1:97,94:30:191:0.492:2	0/1:108,88:30:197:0.449:2	0/1:102,84:30:186:0.452:2	0/1:102,94:31:196:0.480:2	0/1:91,91:31:182:0.500:2	0/1:97,90:31:187:0.481:2
chr17	3182087	rs62089500	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:141,51:31:192:0.266:2	0/1:124,44:32:168:0.262:2	0/1:55,6:31:61:0.098:2	0/1:108,84:31:192:0.438:2	0/1:112,78:30:190:0.411:2	0/1:152,36:31:188:0.191:2	0/1:146,46:31:192:0.240:2	0/1:104,90:31:194:0.464:2	0/1:92,93:32:185:0.503:2	0/1:95,98:31:193:0.508:2	0/1:102,95:31:197:0.482:2
chr17	3195249	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:30:113:0.035:2	./.	./.	./.	./.
chr17	3195271	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:77,4:33:81:0.049:2	./.	./.	./.	0/1:137,5:32:143:0.035:2	./.	./.	./.	./.	./.
chr17	3195348	rs112866958	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,7:31:161:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	3195350	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,8:30:160:0.050:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	3195412	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,5:32:128:0.039:2	0/1:78,5:32:83:0.060:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	3195485	rs201927505	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:85,11:32:96:0.115:2	./.	0/1:162,4:32:166:0.024:2	0/1:130,10:31:141:0.071:2	0/1:160,8:31:168:0.048:2	0/1:173,4:32:177:0.023:2	./.	0/1:143,7:33:150:0.047:2	./.	0/1:128,10:31:138:0.072:2
chr17	3195501	rs374576411	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:30:107:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,5:32:161:0.031:2
chr17	3195503	rs703903	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,19:31:22:0.864:2	./.	0/1:12,126:31:138:0.913:2	0/1:89,96:31:185:0.519:2	0/1:95,68:32:163:0.417:2	./.	./.	0/1:77,57:31:135:0.425:2	0/1:10,146:31:156:0.936:2
chr17	3195699	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,6:29:177:0.034:2	./.	./.	./.	./.	./.
chr17	3195724	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,6:29:197:0.030:2	./.	./.	./.	./.	./.
chr17	3213690	rs61734050	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,95:31:195:0.487:2
chr17	3213728	rs9905684	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,82:29:190:0.432:2	0/1:66,40:28:106:0.377:2	./.	./.	./.	0/1:98,91:29:189:0.481:2	./.	./.	./.	./.	./.
chr17	3213862	rs9905086	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,58:32:152:0.382:2	0/1:74,45:32:120:0.378:2	./.	./.	./.	0/1:85,102:31:187:0.545:2	./.	./.	./.	./.	./.
chr17	3213911	rs9903671	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,60:33:146:0.411:2	0/1:58,42:32:100:0.420:2	./.	./.	./.	0/1:91,97:33:189:0.516:2	./.	./.	./.	./.	./.
chr17	3213962	rs9906179	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,73:29:155:0.471:2	./.	./.	./.	./.	./.
chr17	3214106	rs9911226	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,72:30:142:0.507:2	0/1:39,36:30:75:0.480:2	./.	./.	./.	0/1:124,61:29:185:0.330:2	./.	./.	./.	./.	./.
chr17	3214128	rs9912090	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,83:32:169:0.491:2	0/1:49,42:32:91:0.462:2	./.	./.	./.	0/1:127,68:32:196:0.349:2	./.	./.	./.	./.	./.
chr17	3214164	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:193,4:33:197:0.020:2	./.	./.	./.	./.	./.	./.
chr17	3214181	rs231678	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,9:31:24:0.375:2	0/1:91,98:29:189:0.519:2	0/1:118,77:29:195:0.395:2	0/1:90,103:29:193:0.534:2	./.	./.	./.	0/1:101,92:30:193:0.477:2	0/1:2,154:29:157:0.987:2
chr17	3300934	rs769422	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,12:31:27:0.444:2	./.	./.	./.	0/1:91,50:30:141:0.355:2	./.	./.	./.	./.
chr17	3300970	rs61735439	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:33:171:0.023:2	./.	./.	./.
chr17	3301139	rs148878494	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:158,8:31:166:0.048:2	./.	./.	0/1:169,5:32:174:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr17	3301246	rs11078447	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:30:197:0.025:2	./.	./.	./.
chr17	3301275	rs1735010	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:125,6:32:131:0.046:2	./.	./.	./.	./.	./.	./.	0/1:190,5:30:195:0.026:2	./.	./.	./.
chr17	3301278	rs150989	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:124,6:31:130:0.046:2	./.	./.	0/1:145,5:27:150:0.033:2	./.	./.	./.	0/1:190,5:30:195:0.026:2	./.	./.	./.
chr17	3301317	rs138370923	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:125,4:30:129:0.031:2	./.	./.	./.	./.	./.	0/1:174,4:32:178:0.022:2	./.	0/1:149,7:32:156:0.045:2	./.	./.
chr17	3301319	rs1735011	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:31:126:0.032:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	3301427	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:170,4:33:174:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr17	3301549	rs150988	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,20:31:40:0.500:2	0/1:114,82:31:196:0.418:2	0/1:123,74:31:197:0.376:2	0/1:97,91:31:188:0.484:2	./.	./.	./.	0/1:94,102:31:196:0.520:2	0/1:12,178:32:190:0.937:2
chr17	3301626	rs62091316	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:141,35:31:176:0.199:2	0/1:125,24:30:151:0.161:2	0/1:23,25:31:48:0.521:2	0/1:129,41:31:170:0.241:2	0/1:125,47:31:173:0.273:2	0/1:155,23:31:178:0.129:2	0/1:145,53:32:198:0.268:2	0/1:149,42:31:191:0.220:2	0/1:171,14:31:185:0.076:2	0/1:102,39:31:141:0.277:2	0/1:152,40:31:193:0.208:2
chr17	3324004	rs146946227	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:146,41:32:187:0.219:2	0/1:138,47:32:185:0.254:2	0/1:51,27:31:79:0.346:2	0/1:100,87:31:188:0.465:2	0/1:110,81:31:191:0.424:2	0/1:151,36:31:187:0.193:2	0/1:154,44:31:198:0.222:2	0/1:112,84:31:196:0.429:2	0/1:83,106:32:189:0.561:2	0/1:105,83:31:188:0.441:2	0/1:98,84:32:182:0.462:2
chr17	3324086	rs227788	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:106,84:31:191:0.442:2	0/1:123,73:31:196:0.372:2	0/1:52,40:31:92:0.435:2	0/1:106,83:29:189:0.439:2	0/1:116,80:31:196:0.408:2	0/1:106,89:31:195:0.456:2	0/1:139,58:31:197:0.294:2	0/1:105,86:30:191:0.450:2	0/1:102,94:31:196:0.480:2	0/1:121,72:31:193:0.373:2	0/1:110,85:31:195:0.436:2
chr17	3324255	rs769432	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:122,57:30:179:0.318:2	0/1:114,59:32:173:0.341:2	./.	0/1:117,69:30:186:0.371:2	0/1:74,118:30:192:0.615:2	0/1:112,75:31:187:0.401:2	0/1:139,50:31:189:0.265:2	0/1:74,107:30:181:0.591:2	0/1:123,64:31:187:0.342:2	0/1:134,51:30:185:0.276:2	0/1:120,62:30:182:0.341:2
chr17	3324406	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:30:197:0.025:2	./.	./.	./.
chr17	3324408	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:29:193:0.026:2	./.	./.	./.
chr17	3324429	rs201341246	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:155,7:30:162:0.043:2	./.	./.	0/1:181,9:30:190:0.047:2	./.	0/1:167,8:30:175:0.046:2	./.	./.	./.	./.	./.
chr17	3324810	rs227787	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,6:29:9:0.667:2	0/1:38,56:33:94:0.596:2	./.	./.	./.	./.	0/1:42,51:33:93:0.548:2	0/1:48,17:33:65:0.262:2	0/1:47,37:33:84:0.440:2
chr17	3336162	rs11867612	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:18,9:31:27:0.333:2	0/1:22,9:30:31:0.290:2	./.	0/1:16,13:30:29:0.448:2	./.	./.	0/1:8,6:29:14:0.429:2	0/1:0,29:29:29:1.00:2	0/1:27,13:32:40:0.325:2	0/1:18,7:32:25:0.280:2	./.
chr17	3336260	rs61739591	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,33:32:61:0.541:2	0/1:33,17:33:50:0.340:2	./.	0/1:55,32:33:87:0.368:2	0/1:32,23:32:55:0.418:2	./.	0/1:24,10:31:34:0.294:2	0/1:0,81:33:81:1.00:2	0/1:47,46:33:93:0.495:2	0/1:42,46:33:88:0.523:2	./.
chr17	3336374	rs436972	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:33:159:0.025:2	./.	./.	./.	./.	./.
chr17	3336543	rs200455458	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,7:32:164:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	3336980	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,6:30:194:0.031:2	0/1:178,11:31:189:0.058:2	0/1:183,8:31:191:0.042:2	./.	./.	./.	./.	0/1:181,9:31:190:0.047:2
chr17	3337057	rs769431	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,120:31:167:0.719:2	0/1:37,98:31:135:0.726:2	0/1:17,17:30:34:0.500:2	0/1:60,127:31:187:0.679:2	0/1:56,84:31:140:0.600:2	0/1:125,54:31:179:0.302:2	0/1:52,115:32:167:0.689:2	0/1:51,129:31:180:0.717:2	0/1:130,65:31:195:0.333:2	0/1:42,95:31:137:0.693:2	0/1:44,104:31:148:0.703:2
chr17	3343519	rs17822627	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:66,52:32:118:0.441:2	0/1:42,44:32:86:0.512:2	0/1:6,5:32:11:0.455:2	./.	./.	0/1:62,38:32:100:0.380:2	0/1:53,54:32:107:0.505:2	./.	./.	./.	0/1:77,70:33:147:0.476:2
chr17	3352256	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,93:31:190:0.489:2	./.	./.	./.
chr17	3352294	rs1488689	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:84,82:32:166:0.494:2	0/1:64,55:32:119:0.462:2	0/1:10,11:32:21:0.524:2	./.	./.	0/1:87,97:31:184:0.527:2	0/1:76,69:32:145:0.476:2	./.	./.	./.	0/1:98,72:32:170:0.424:2
chr17	3352309	rs11556563	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:91,80:30:171:0.468:2	0/1:48,60:29:108:0.556:2	./.	0/1:82,90:29:172:0.523:2	0/1:65,86:29:151:0.570:2	./.	0/1:71,74:30:145:0.510:2	0/1:3,169:29:172:0.983:2	0/1:101,83:30:184:0.451:2	0/1:100,97:30:197:0.492:2	./.
chr17	3352331	rs1488690	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:82,79:32:161:0.491:2	0/1:61,49:32:110:0.445:2	0/1:10,7:32:17:0.412:2	./.	./.	0/1:95,77:31:172:0.448:2	0/1:79,48:32:127:0.378:2	./.	./.	./.	0/1:102,81:31:183:0.443:2
chr17	3397702	rs12948217	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:37,33:31:70:0.471:2	0/1:18,14:32:32:0.438:2	./.	./.	./.	./.	./.	0/1:22,29:32:51:0.569:2	./.	./.	./.
chr17	3422032	rs7216486	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,146:31:147:0.993:2	0/1:0,104:31:104:1.00:2	0/1:2,28:30:30:0.933:2	./.	0/1:96,80:30:176:0.455:2	./.	0/1:0,157:31:158:1.00:2	0/1:2,188:31:190:0.989:2	0/1:0,144:32:144:1.00:2	0/1:100,67:31:167:0.401:2	0/1:0,121:31:121:1.00:2
chr17	3422077	rs12946883	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:2,119:30:121:0.983:2	0/1:1,83:30:84:0.988:2	./.	./.	./.	./.	0/1:86,66:31:152:0.434:2	./.	0/1:70,80:31:150:0.533:2	0/1:66,45:30:112:0.405:2	0/1:63,56:30:119:0.471:2
chr17	3436080	rs395357	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:94,91:32:185:0.492:2	0/1:62,42:31:104:0.404:2	0/1:0,50:31:50:1.00:2	0/1:99,78:31:177:0.441:2	0/1:107,88:31:195:0.451:2	0/1:98,89:32:187:0.476:2	0/1:109,88:31:197:0.447:2	0/1:1,191:31:192:0.995:2	0/1:104,74:32:179:0.416:2	0/1:184,4:34:188:0.021:2	0/1:0,182:32:182:1.00:2
chr17	3445901	rs11078458	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,164:30:164:1.00:2	0/1:0,185:30:185:1.00:2	0/1:87,93:29:180:0.517:2	0/1:0,194:30:194:1.00:2	./.	0/1:1,166:31:167:0.994:2	0/1:5,178:30:183:0.973:2	./.
chr17	3446885	rs322937	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,54:32:56:0.964:2	0/1:1,47:32:48:0.979:2	0/1:0,14:31:14:1.00:2	0/1:32,34:32:66:0.515:2	0/1:53,38:32:91:0.418:2	0/1:48,51:33:99:0.515:2	./.	0/1:53,46:33:99:0.465:2	./.	./.	0/1:0,89:32:89:1.00:2
chr17	3447914	rs1039519	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,11:33:14:0.786:2	./.	./.	0/1:8,8:32:16:0.500:2	0/1:9,5:31:14:0.357:2	./.	0/1:0,12:31:12:1.00:2	./.	0/1:0,7:33:7:1.00:2	0/1:0,11:30:11:1.00:2	./.
chr17	3458072	rs322965	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,12:30:12:1.00:2	0/1:0,10:28:10:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,27:30:27:1.00:2	0/1:1,29:30:30:0.967:2	0/1:0,22:30:22:1.00:2	0/1:0,20:28:20:1.00:2	0/1:1,23:29:24:0.958:2	0/1:0,21:31:21:1.00:2	0/1:0,26:28:26:1.00:2	0/1:0,23:28:23:1.00:2
chr17	3480447	rs8065080	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,33:30:72:0.458:2	0/1:25,18:29:43:0.419:2	./.	./.	./.	0/1:43,36:29:79:0.456:2	0/1:47,45:29:92:0.489:2	0/1:3,106:29:109:0.972:2	./.	./.	0/1:1,76:29:77:0.987:2
chr17	3486702	rs224534	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,50:32:54:0.926:2	0/1:0,42:32:42:1.00:2	./.	0/1:47,23:32:70:0.329:2	0/1:21,20:31:41:0.488:2	./.	0/1:29,19:31:48:0.396:2	./.	0/1:39,55:32:94:0.585:2	0/1:44,26:30:70:0.371:2	./.
chr17	3493200	rs222747	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,37:31:84:0.440:2	0/1:17,24:32:41:0.585:2	0/1:0,19:33:19:1.00:2	0/1:0,122:33:122:1.00:2	0/1:3,156:31:159:0.981:2	0/1:2,122:32:124:0.984:2	0/1:69,85:33:154:0.552:2	0/1:0,138:31:138:1.00:2	0/1:0,101:33:101:1.00:2	0/1:58,39:33:97:0.402:2	0/1:0,88:32:88:1.00:2
chr17	3494361	rs222748	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:69,70:32:139:0.504:2	0/1:46,41:31:87:0.471:2	./.	0/1:100,71:31:171:0.415:2	0/1:76,83:32:159:0.522:2	./.	./.	./.	0/1:98,84:32:182:0.462:2	./.	./.
chr17	3495374	rs222749	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,16:31:38:0.432:2	0/1:6,15:31:21:0.714:2	./.	0/1:25,16:31:41:0.390:2	0/1:20,31:32:51:0.608:2	./.	./.	./.	./.	./.	./.
chr17	3514028	rs224496	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,131:32:131:1.00:2	0/1:0,102:32:102:1.00:2	0/1:1,80:33:81:0.988:2	0/1:0,49:33:49:1.00:2	0/1:0,65:32:65:1.00:2
chr17	3526637	rs150857	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,34:32:80:0.425:2	0/1:24,22:31:46:0.478:2	./.	0/1:70,62:30:132:0.470:2	0/1:71,53:30:124:0.427:2	./.	./.	./.	./.	./.	./.
chr17	3553526	rs161350	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,127:31:128:1.00:2	0/1:0,84:31:84:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,146:31:146:1.00:2	0/1:0,141:30:141:1.00:2	0/1:0,136:30:136:1.00:2	0/1:1,132:31:133:0.992:2	0/1:1,121:31:122:0.992:2	0/1:0,120:32:120:1.00:2	0/1:0,130:31:130:1.00:2	0/1:0,149:31:150:1.00:2
chr17	3559823	rs1800528	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:72,72:32:144:0.500:2	0/1:56,55:32:111:0.495:2	./.	0/1:106,79:32:185:0.427:2	./.	0/1:86,100:32:186:0.538:2	./.	./.	0/1:85,100:33:185:0.541:2	./.	./.
chr17	3561396	rs161400	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:31:87:1.00:2	0/1:1,58:32:59:0.983:2	0/1:0,17:30:17:1.00:2	0/1:0,151:30:151:1.00:2	0/1:0,176:29:176:1.00:2	0/1:0,143:30:143:1.00:2	0/1:92,90:30:182:0.495:2	0/1:2,154:29:156:0.987:2	0/1:0,150:31:150:1.00:2	0/1:0,137:30:137:1.00:2	0/1:0,91:30:91:1.00:2
chr17	3563963	rs2873624	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,74:32:164:0.451:2	./.	./.	0/1:104,71:34:175:0.406:2	0/1:77,49:32:126:0.389:2	0/1:86,62:32:148:0.419:2
chr17	3568012	rs8278	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,44:31:44:1.00:2	0/1:38,30:31:68:0.441:2	0/1:0,55:32:55:1.00:2	0/1:0,70:32:70:1.00:2	0/1:49,23:33:72:0.319:2	0/1:0,49:32:50:1.00:2	0/1:0,61:31:61:1.00:2
chr17	3577146	rs1063497	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,17:31:48:0.354:2	./.	./.	0/1:33,31:32:64:0.484:2	./.	./.
chr17	3599205	rs142863822	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,37:32:96:0.385:2	./.
chr17	3627840	rs220462	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,59:29:115:0.513:2	./.	./.
chr17	3628212	rs220461	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,6:35:17:0.353:2	./.	./.
chr17	3628362	rs3809806	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,20:33:40:0.500:2	0/1:12,3:31:15:0.200:2	./.	./.	0/1:19,26:31:46:0.578:2	0/1:21,14:29:35:0.400:2	./.	0/1:7,24:31:31:0.774:2	0/1:14,20:33:34:0.588:2	./.	./.
chr17	3629105	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:35:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	3629698	rs170208	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:34,28:30:62:0.452:2	0/1:14,14:29:28:0.500:2	./.	./.	0/1:36,23:30:59:0.390:2	0/1:42,46:29:88:0.523:2	./.	0/1:49,23:30:72:0.319:2	0/1:49,43:30:92:0.467:2	./.	./.
chr17	3629848	rs9896869	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:30:7:0.571:2	0/1:1,2:33:3:0.667:2	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.
chr17	3629859	rs72825407	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:28:7:0.571:2	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	3631241	rs2976230	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:67,58:32:125:0.464:2	0/1:44,44:33:88:0.500:2	./.	./.	0/1:72,64:33:136:0.471:2	0/1:78,81:31:159:0.509:2	./.	0/1:88,107:33:195:0.549:2	./.	./.	./.
chr17	3631473	rs7219600	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,61:33:132:0.462:2	0/1:33,37:32:70:0.529:2	0/1:2,14:32:16:0.875:2	0/1:63,64:33:127:0.504:2	0/1:1,121:31:122:0.992:2	0/1:56,67:32:123:0.545:2	0/1:56,63:32:119:0.529:2	0/1:2,126:32:128:0.984:2	./.	0/1:67,50:32:117:0.427:2	./.
chr17	3632836	rs1716	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,88:32:182:0.484:2	./.	./.
chr17	3635740	rs3744679	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,37:33:71:0.521:2	./.	./.
chr17	3649214	rs1183610	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:31:27:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,37:30:37:1.00:2	0/1:27,29:31:56:0.518:2	0/1:0,41:30:41:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,24:31:24:1.00:2
chr17	3654980	rs11652878	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,12:28:33:0.364:2	./.	./.	./.	./.	./.
chr17	3657159	rs2272606	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:33:52:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,57:32:57:1.00:2	0/1:55,40:32:95:0.421:2	0/1:42,30:31:72:0.417:2	0/1:1,63:31:64:0.984:2	0/1:1,89:32:90:0.989:2	0/1:0,59:32:59:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,48:33:48:1.00:2
chr17	3657175	rs220479	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:29:58:1.00:2	0/1:0,20:28:20:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,63:30:63:1.00:2	0/1:59,40:30:99:0.404:2	0/1:0,64:29:64:1.00:2	0/1:3,62:29:65:0.954:2	0/1:0,81:29:81:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,49:29:49:1.00:2
chr17	3661052	rs71366574	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,53:31:120:0.442:2	./.	./.	./.	./.	./.
chr17	3772844	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:31:68:0.059:2	./.
chr17	3775848	rs17855558	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,3:31:9:0.333:2	0/1:0,66:32:66:1.00:2	0/1:27,24:31:51:0.471:2	0/1:33,25:30:58:0.431:2	0/1:2,39:32:41:0.951:2	./.	./.	0/1:25,23:30:48:0.479:2	0/1:29,16:32:45:0.356:2
chr17	3775916	rs7214864	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,10:28:13:0.769:2	0/1:1,111:29:112:0.991:2	0/1:0,92:29:92:1.00:2	0/1:0,97:29:97:1.00:2	0/1:5,103:30:108:0.954:2	0/1:0,101:29:101:1.00:2	./.	0/1:49,38:29:87:0.437:2	0/1:41,28:28:69:0.406:2
chr17	3785618	rs74582253	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,75:32:192:0.391:2
chr17	3787223	rs56101368	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,29:32:56:0.518:2
chr17	3787726	rs3809803	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,50:31:50:1.00:2	./.	./.	./.	0/1:0,25:32:25:1.00:2
chr17	3828702	rs887387	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,7:34:22:0.318:2	./.	0/1:26,15:34:41:0.366:2	./.	./.	0/1:15,13:32:28:0.464:2	./.	./.
chr17	3839685	rs1062683	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:62,36:30:98:0.367:2	0/1:29,22:31:51:0.431:2	0/1:6,4:30:10:0.400:2	./.	./.	0/1:71,72:30:143:0.503:2	./.	./.	0/1:72,39:31:111:0.351:2	./.	0/1:119,4:32:123:0.033:2
chr17	3840928	rs3179783	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,35:30:72:0.486:2	0/1:28,18:30:46:0.391:2	./.	./.	./.	0/1:62,38:30:100:0.380:2	./.	./.	0/1:59,41:31:100:0.410:2	./.	./.
chr17	3844345	rs9895012	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,9:33:14:0.643:2	./.	./.	0/1:3,4:31:7:0.571:2
chr17	3844787	rs1800912	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,4:34:14:0.286:2	0/1:31,30:30:61:0.492:2	./.	./.	./.	0/1:45,42:30:87:0.483:2	0/1:40,26:33:66:0.394:2	0/1:31,31:32:62:0.500:2	0/1:23,14:29:37:0.378:2
chr17	3845927	rs17846889	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:8,5:28:13:0.385:2	./.	0/1:11,10:27:21:0.476:2	./.	0/1:17,9:28:26:0.346:2	./.	0/1:21,21:26:42:0.500:2	0/1:0,19:28:19:1.00:2	0/1:5,7:30:12:0.583:2	0/1:9,10:28:19:0.526:2
chr17	3846802	rs758641	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,30:30:55:0.545:2	0/1:20,22:28:42:0.524:2	0/1:0,9:31:9:1.00:2	0/1:58,40:30:99:0.408:2	./.	0/1:55,51:29:106:0.481:2	./.	0/1:60,61:29:121:0.504:2	0/1:1,88:30:89:0.989:2	0/1:33,21:29:54:0.389:2	0/1:18,22:29:40:0.550:2
chr17	3848013	rs1800911	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,32:25:78:0.410:2	0/1:28,16:29:44:0.364:2	0/1:0,15:28:15:1.00:2	0/1:70,58:28:128:0.453:2	./.	0/1:80,39:26:119:0.328:2	./.	0/1:84,50:27:134:0.373:2	0/1:1,103:29:104:0.990:2	0/1:51,45:26:96:0.469:2	0/1:39,36:26:75:0.480:2
chr17	3912919	rs190769959	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,3:35:37:0.081:2	./.
chr17	3916823	rs8075562	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:26,16:31:42:0.381:2	0/1:12,12:32:24:0.500:2	0/1:4,5:30:9:0.556:2	./.	0/1:30,23:31:53:0.434:2	./.	./.	0/1:29,41:30:70:0.586:2	./.	./.	0/1:22,32:30:54:0.593:2
chr17	3926110	rs711177	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,10:33:29:0.345:2	0/1:9,6:33:15:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	3935511	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,53:31:120:0.442:2	./.	./.	./.	./.
chr17	3937473	rs114782080	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:32:162:0.025:2	./.	./.	./.
chr17	3947533	rs1006954	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,11:31:26:0.423:2	./.	0/1:75,52:30:127:0.409:2	./.	./.	0/1:100,97:31:197:0.492:2	./.	./.	0/1:0,192:32:192:1.00:2
chr17	3947644	rs781831	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:62,67:33:129:0.519:2	0/1:33,50:33:83:0.602:2	0/1:4,9:33:13:0.692:2	./.	0/1:0,106:32:106:1.00:2	0/1:80,51:32:131:0.389:2	./.	0/1:0,133:32:133:1.00:2	./.	0/1:54,57:32:111:0.514:2	0/1:2,133:33:135:0.985:2
chr17	3953083	rs781853	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:31,25:29:56:0.446:2	0/1:17,18:27:35:0.514:2	./.	./.	0/1:0,56:28:56:1.00:2	0/1:64,32:29:96:0.333:2	./.	0/1:0,74:30:74:1.00:2	./.	0/1:55,28:30:83:0.337:2	0/1:2,61:28:63:0.968:2
chr17	3953102	rs781852	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:28,19:32:47:0.404:2	0/1:14,13:32:27:0.481:2	./.	./.	0/1:0,46:32:46:1.00:2	0/1:49,19:31:68:0.279:2	./.	0/1:0,71:32:71:1.00:2	./.	0/1:35,21:33:56:0.375:2	0/1:1,45:32:46:0.978:2
chr17	3954205	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:34:100:0.040:2	./.	./.
chr17	3957424	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:30:64:0.063:2	./.
chr17	3961414	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,4:33:72:0.056:2	./.	./.	./.	./.	./.	./.
chr17	3966064	rs781825	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:13,14:32:27:0.519:2	0/1:4,12:32:16:0.750:2	0/1:1,2:33:3:0.667:2	./.	0/1:0,19:32:19:1.00:2	0/1:14,9:32:23:0.391:2	./.	0/1:1,33:33:34:0.971:2	./.	0/1:6,6:33:12:0.500:2	0/1:0,30:33:30:1.00:2
chr17	3977532	rs34760976	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,16:33:30:0.533:2	./.
chr17	3977558	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,23:29:43:0.535:2
chr17	3978448	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:159,4:33:163:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr17	3979949	rs7207986	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,10:32:19:0.526:2	./.	0/1:7,15:32:22:0.682:2	./.
chr17	3979982	rs8065185	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	0/1:15,12:29:27:0.444:2	./.	./.	0/1:18,14:30:32:0.438:2	./.	./.	0/1:0,30:31:30:1.00:2
chr17	3981290	rs78806449	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,5:31:23:0.217:2	0/1:12,9:31:21:0.429:2	./.	./.	./.	0/1:13,11:30:24:0.458:2	./.	./.	./.	./.	./.
chr17	3981300	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,14:31:23:0.609:2	./.
chr17	3999199	rs12947597	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,12:32:33:0.364:2	./.	0/1:40,3:35:43:0.070:2	0/1:26,21:32:47:0.447:2	./.	./.	./.
chr17	4008021	rs7222392	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:34:11:0.545:2	./.	0/1:51,50:32:101:0.495:2	./.	./.	0/1:65,71:33:136:0.522:2	./.	./.	0/1:0,92:32:92:1.00:2
chr17	4009040	rs143093880	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,24:29:53:0.453:2	./.	./.	./.	./.	./.
chr17	4015997	rs58625333	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:46,46:29:92:0.500:2	0/1:36,20:29:56:0.357:2	./.	./.	0/1:98,87:29:185:0.470:2	0/1:74,73:29:147:0.497:2	./.	0/1:94,92:30:186:0.495:2	./.	./.	./.
chr17	4016096	rs74887186	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,31:32:51:0.608:2	./.	./.	0/1:42,37:33:79:0.468:2	./.	./.	./.
chr17	4020432	rs117738178	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,23:31:85:0.271:2	./.	./.	0/1:75,61:32:136:0.449:2	./.	./.	./.
chr17	4046101	rs1454121	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.
chr17	4047145	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,27:32:53:0.509:2	./.
chr17	4047227	rs140071359	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,14:31:26:0.538:2	./.
chr17	4085513	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:126,4:32:130:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr17	4088291	rs2020118	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,25:32:49:0.510:2	0/1:12,8:32:20:0.400:2	0/1:0,5:31:5:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,95:32:95:1.00:2	0/1:29,33:32:62:0.532:2	0/1:1,92:32:93:0.989:2	0/1:0,95:31:95:1.00:2	0/1:0,63:33:63:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,47:32:47:1.00:2
chr17	4098682	rs369522087	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,21:31:33:0.636:2	./.
chr17	4109674	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:32:71:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	4337283	rs35751906	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,9:32:15:0.600:2	0/1:7,11:32:18:0.611:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,9:31:19:0.474:2
chr17	4337412	rs3809853	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:50,38:32:88:0.432:2	0/1:24,21:32:45:0.467:2	./.	./.	0/1:104,76:31:180:0.422:2	./.	./.	./.	./.	./.	0/1:56,58:32:114:0.509:2
chr17	4348412	rs149840371	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,56:32:118:0.479:2
chr17	4350182	rs2047233	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,49:32:51:0.961:2	0/1:0,26:32:26:1.00:2	0/1:1,7:33:8:0.875:2	0/1:0,80:32:80:1.00:2	0/1:0,64:32:64:1.00:2	0/1:37,38:32:75:0.507:2	0/1:0,54:32:54:1.00:2	0/1:47,34:32:81:0.420:2	0/1:27,41:32:68:0.603:2	0/1:28,30:33:58:0.517:2	0/1:0,30:32:30:1.00:2
chr17	4351560	rs12450838	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,42:31:72:0.583:2	0/1:28,29:31:57:0.509:2	./.
chr17	4352539	rs7224464	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,22:32:42:0.524:2	0/1:12,13:32:25:0.520:2	./.	0/1:28,37:31:65:0.569:2	0/1:11,25:31:36:0.694:2	./.	0/1:26,24:32:50:0.480:2	./.	./.	0/1:17,28:31:45:0.622:2	0/1:0,32:31:32:1.00:2
chr17	4352636	rs34457931	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,12:32:29:0.414:2	0/1:11,9:32:20:0.450:2	0/1:0,6:29:6:1.00:2	0/1:27,24:31:51:0.471:2	0/1:23,14:31:37:0.378:2	0/1:22,19:32:41:0.463:2	./.	0/1:32,14:31:47:0.304:2	./.	./.	0/1:5,10:32:15:0.667:2
chr17	4356375	rs11655342	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,37:31:75:0.493:2	0/1:40,30:31:70:0.429:2	./.
chr17	4391132	rs2291743	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:1,47:31:48:0.979:2	0/1:0,19:32:19:1.00:2	0/1:0,10:31:10:1.00:2	./.	./.	0/1:69,45:29:114:0.395:2	0/1:54,46:30:100:0.460:2	./.	0/1:2,58:32:60:0.967:2	./.	0/1:57,29:32:86:0.337:2
chr17	4391153	rs333122	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:1,47:32:48:0.979:2	0/1:0,20:32:20:1.00:2	0/1:0,10:32:10:1.00:2	./.	./.	0/1:74,40:33:114:0.351:2	0/1:51,40:32:92:0.440:2	./.	0/1:1,61:33:62:0.984:2	./.	0/1:55,29:32:84:0.345:2
chr17	4442818	rs73335853	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,55:32:102:0.539:2	./.	./.	./.	./.
chr17	4443075	rs9905742	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,38:29:73:0.521:2	./.
chr17	4445085	rs62066360	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,25:28:47:0.532:2	./.
chr17	4446003	rs143029758	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,63:32:147:0.429:2	./.	./.	./.
chr17	4446457	rs751670	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	./.	./.	./.	./.
chr17	4448979	rs145628809	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:33:60:0.067:2
chr17	4451307	rs145405468	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	4451545	rs9907224	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,39:29:74:0.527:2	./.
chr17	4451576	rs73337533	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,61:33:132:0.462:2	./.	0/1:47,40:33:87:0.460:2	./.	0/1:32,29:32:61:0.475:2
chr17	4451862	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,8:32:91:0.089:2	./.
chr17	4453508	rs73337535	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,18:31:49:0.367:2	./.	0/1:30,21:31:52:0.412:2	./.	0/1:44,24:30:68:0.353:2
chr17	4455500	rs7206974	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:29:103:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,154:30:154:1.00:2	0/1:1,146:30:147:0.993:2	0/1:0,150:29:150:1.00:2	0/1:0,156:30:156:1.00:2	0/1:0,167:29:167:1.00:2	0/1:0,126:31:126:1.00:2	0/1:1,107:30:108:0.991:2	0/1:0,106:29:107:1.00:2
chr17	4457116	rs78557985	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,19:30:42:0.452:2
chr17	4457571	rs78992572	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,23:31:59:0.390:2	./.
chr17	4457580	rs2306270	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,29:32:71:0.408:2	0/1:30,15:32:45:0.333:2	./.	./.	./.	./.
chr17	4458598	rs3809849	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,15:27:43:0.349:2	./.	0/1:16,13:28:29:0.448:2	./.	./.	./.	./.	./.
chr17	4461748	rs7215121	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,12:33:16:0.750:2	0/1:5,4:29:9:0.444:2	0/1:0,2:32:2:1.00:2	0/1:2,6:32:8:0.750:2	0/1:5,9:31:14:0.643:2	./.	./.	./.	0/1:0,31:32:31:1.00:2	./.	0/1:2,5:32:7:0.714:2
chr17	4461941	.	A	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,13:14:90:0.144:2	./.	0/1:65,12:18:77:0.156:2	0/1:43,10:12:53:0.189:2	0/1:44,10:12:54:0.185:2	./.	./.
chr17	4462913	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:29:105:0.038:2	./.	./.	./.
chr17	4463023	rs11657054	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,30:28:31:1.00:2	0/1:0,19:29:19:1.00:2	./.	0/1:23,11:30:34:0.324:2	0/1:0,21:30:21:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,26:30:26:1.00:2	0/1:8,5:30:13:0.385:2
chr17	4463699	rs7216284	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,9:32:28:0.321:2	./.	./.	./.	0/1:1,19:32:20:0.950:2	./.	./.	./.
chr17	4463796	rs7216474	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,6:31:25:0.240:2	./.	./.	./.	0/1:9,19:33:28:0.679:2	./.	./.	./.
chr17	4495682	rs4790654	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:18,20:32:38:0.526:2	0/1:11,6:32:17:0.353:2	./.	0/1:0,49:31:49:1.00:2	./.	./.	0/1:43,38:31:81:0.469:2	./.	./.	0/1:20,21:32:41:0.512:2	./.
chr17	4495740	rs12449695	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,14:30:24:0.583:2	0/1:5,6:32:11:0.545:2	./.	./.	./.	./.	./.	./.	0/1:23,32:31:55:0.582:2	./.	./.
chr17	4497160	rs8080130	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:32:14:0.500:2	./.	0/1:1,156:30:157:0.994:2	0/1:0,107:30:107:1.00:2	0/1:108,65:30:173:0.376:2	0/1:1,127:30:128:0.992:2	0/1:1,95:31:96:0.990:2	./.	0/1:39,47:30:86:0.547:2
chr17	4498611	rs12103697	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:44,29:32:73:0.397:2	0/1:33,31:32:64:0.484:2	./.	0/1:0,70:32:70:1.00:2	./.	./.	0/1:53,43:32:96:0.448:2	./.	./.	0/1:1,54:32:55:0.982:2	0/1:22,23:31:45:0.511:2
chr17	4536241	rs743646	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:1,74:30:75:0.987:2	0/1:2,41:29:43:0.953:2	0/1:8,4:29:12:0.333:2	./.	./.	./.	./.	0/1:52,44:29:96:0.458:2	./.	./.	./.
chr17	4536795	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,3:31:28:0.107:2	./.	./.	./.	./.	./.
chr17	4541560	rs3887815	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,55:30:191:0.288:2	./.	./.	./.	./.	./.
chr17	4541604	rs3892408	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:145,37:31:182:0.203:2	0/1:146,49:31:195:0.251:2	./.	./.	./.	0/1:131,50:33:181:0.276:2	0/1:129,50:32:179:0.279:2	0/1:120,52:32:172:0.302:2
chr17	4542794	rs11568142	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:28,38:33:66:0.576:2	0/1:27,23:33:50:0.460:2	./.	./.	./.	./.	./.	0/1:58,52:31:110:0.473:2	./.	./.	./.
chr17	4574751	rs9436	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,37:31:68:0.561:2	./.	0/1:35,30:32:65:0.462:2	0/1:45,31:31:76:0.408:2	./.	./.	0/1:2,60:33:62:0.968:2	0/1:0,73:32:73:1.00:2
chr17	4575283	rs3862485	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,22:29:22:1.00:2	0/1:1,8:27:9:0.889:2	./.	0/1:0,18:27:18:1.00:2	0/1:8,5:28:13:0.385:2	0/1:1,16:29:17:0.941:2	0/1:9,10:27:19:0.526:2	0/1:0,14:26:14:1.00:2	0/1:1,13:29:14:0.929:2	0/1:0,18:29:18:1.00:2	0/1:0,13:28:13:1.00:2
chr17	4575344	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:28:59:0.069:2
chr17	4576620	rs55677157	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,52:31:107:0.486:2	./.	0/1:34,46:30:80:0.575:2	0/1:26,15:31:41:0.366:2	./.	./.	0/1:2,81:31:84:0.976:2	0/1:0,48:30:48:1.00:2
chr17	4577950	rs8081507	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,17:29:28:0.607:2	./.	./.	./.	./.
chr17	4585821	rs11541059	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:32,31:32:63:0.492:2	0/1:17,15:29:32:0.469:2	./.	./.	./.	./.	./.	0/1:64,67:31:131:0.511:2	./.	./.	./.
chr17	4586240	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,12:12:78:0.154:2	0/1:72,14:11:86:0.163:2	./.	./.	./.	./.	./.
chr17	4620497	rs7208257	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,13:33:13:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,18:32:18:1.00:2	0/1:5,7:32:12:0.583:2	0/1:0,20:32:20:1.00:2	0/1:0,14:34:14:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,22:32:22:1.00:2
chr17	4621262	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,7:30:22:0.318:2
chr17	4622638	rs1045280	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,70:32:71:0.986:2	0/1:0,26:31:26:1.00:2	0/1:8,5:32:13:0.385:2	0/1:41,43:31:84:0.512:2	0/1:34,40:31:74:0.541:2	0/1:47,48:30:95:0.505:2	0/1:116,4:33:120:0.033:2	0/1:0,124:31:124:1.00:2	0/1:45,42:32:87:0.483:2	./.	./.
chr17	4623514	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:30:68:0.059:2	./.	./.	./.
chr17	4637886	rs1051009	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,24:32:54:0.444:2	0/1:20,19:32:39:0.487:2	./.	./.	./.	0/1:35,35:31:70:0.500:2	0/1:12,23:31:35:0.657:2	./.	./.	./.	./.
chr17	4638484	rs1876444	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,50:30:51:0.980:2	0/1:0,39:31:39:1.00:2	./.	0/1:64,33:31:97:0.340:2	0/1:38,33:30:71:0.465:2	0/1:39,54:31:93:0.581:2	0/1:50,43:31:93:0.462:2	0/1:1,71:29:72:0.986:2	0/1:38,29:31:67:0.433:2	./.	./.
chr17	4638563	rs2277680	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:43,53:32:97:0.552:2	0/1:41,30:32:71:0.423:2	0/1:9,12:30:21:0.571:2	./.	0/1:112,72:31:184:0.391:2	0/1:65,93:31:158:0.589:2	0/1:102,94:31:196:0.480:2	0/1:84,89:30:174:0.514:2	./.	./.	./.
chr17	4638737	rs1050998	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,19:32:28:0.679:2	0/1:14,13:31:27:0.481:2	./.	./.	0/1:15,13:31:28:0.464:2	0/1:16,21:32:38:0.568:2	0/1:14,11:29:25:0.440:2	0/1:29,23:32:52:0.442:2	./.	./.	./.
chr17	4641755	rs1050997	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:30:58:1.00:2	0/1:0,24:33:24:1.00:2	0/1:3,3:33:6:0.500:2	0/1:0,62:32:62:1.00:2	0/1:41,50:32:91:0.549:2	0/1:25,21:32:46:0.457:2	0/1:28,30:31:58:0.517:2	0/1:0,65:31:65:1.00:2	0/1:36,29:33:66:0.446:2	0/1:28,21:32:49:0.429:2	0/1:33,38:32:71:0.535:2
chr17	4645324	rs3826517	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,44:30:44:1.00:2	0/1:0,31:28:31:1.00:2	0/1:2,4:29:6:0.667:2	./.	0/1:32,27:28:59:0.458:2	0/1:0,60:29:60:1.00:2	0/1:42,42:29:84:0.500:2	0/1:33,27:29:60:0.450:2	0/1:41,26:28:67:0.388:2	./.	0/1:24,25:28:49:0.510:2
chr17	4648175	rs61743945	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,28:33:41:0.683:2	./.	./.	./.	./.	./.	./.
chr17	4648182	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.	./.	./.
chr17	4684095	rs13520	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,85:32:85:1.00:2	0/1:0,57:32:57:1.00:2	./.	0/1:0,110:32:110:1.00:2	./.	0/1:2,110:31:112:0.982:2	0/1:70,77:32:147:0.524:2	0/1:0,156:31:156:1.00:2	0/1:57,57:32:114:0.500:2	./.	0/1:45,43:32:89:0.489:2
chr17	4686414	rs3851	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,40:32:94:0.426:2	0/1:21,24:32:45:0.533:2	0/1:5,8:31:13:0.615:2	0/1:2,143:32:145:0.986:2	0/1:74,45:31:119:0.378:2	0/1:0,106:32:106:1.00:2	0/1:90,46:31:136:0.338:2	0/1:2,126:32:128:0.984:2	0/1:79,39:33:119:0.331:2	./.	0/1:61,41:31:102:0.402:2
chr17	4689313	rs2279961	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,49:32:108:0.454:2	./.	./.	./.	./.	./.	./.
chr17	4689572	rs4790706	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,4:25:8:0.500:2	0/1:7,5:32:12:0.417:2	0/1:1,2:32:3:0.667:2	0/1:0,10:34:10:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,12:32:12:1.00:2	0/1:6,9:32:15:0.600:2	0/1:0,19:31:19:1.00:2	0/1:9,12:33:21:0.571:2	./.	0/1:4,7:33:11:0.636:2
chr17	4692559	rs2304969	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,11:30:11:1.00:2	./.	./.	./.	./.	./.	./.
chr17	4693054	rs12951761	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:11,17:30:28:0.607:2	0/1:6,13:32:19:0.684:2	0/1:0,5:29:5:1.00:2	./.	./.	./.	0/1:12,23:30:35:0.657:2	./.	0/1:22,26:31:48:0.542:2	0/1:0,33:29:33:1.00:2	0/1:13,17:31:30:0.567:2
chr17	4693170	rs34850425	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,11:28:11:1.00:2	0/1:0,9:28:9:1.00:2	0/1:0,3:28:3:1.00:2	0/1:0,6:27:6:1.00:2	0/1:0,12:27:12:1.00:2	0/1:0,24:26:24:1.00:2	0/1:0,5:24:5:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,17:27:17:1.00:2	0/1:0,21:28:21:1.00:2	0/1:0,7:27:7:1.00:2
chr17	4699552	rs3169950	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,13:30:22:0.591:2	./.	./.	0/1:16,19:29:35:0.543:2	0/1:0,8:31:8:1.00:2	0/1:0,20:29:20:1.00:2	0/1:17,11:29:28:0.393:2	0/1:1,26:30:27:0.963:2	./.	./.	0/1:9,13:30:22:0.591:2
chr17	4701019	rs2304975	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,7:30:10:0.700:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	4711655	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,4:31:66:0.061:2	./.	./.	./.	./.	./.	./.
chr17	4712395	rs1132446	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:32:6:1.00:2	0/1:25,15:31:40:0.375:2	./.	0/1:15,21:30:36:0.583:2	0/1:20,17:30:37:0.459:2	./.	0/1:0,35:32:35:1.00:2	0/1:16,13:31:29:0.448:2	0/1:25,21:30:46:0.457:2
chr17	4712443	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:32:62:0.065:2	./.
chr17	4718776	rs1132448	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,111:32:111:1.00:2	0/1:0,77:32:77:1.00:2	0/1:17,15:32:32:0.469:2	0/1:80,89:32:169:0.527:2	0/1:0,196:31:196:1.00:2	0/1:71,89:32:160:0.556:2	0/1:91,103:31:194:0.531:2	0/1:2,189:32:191:0.990:2	./.	0/1:45,55:31:100:0.550:2	0/1:73,73:31:146:0.500:2
chr17	4720469	rs1052748	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:37,29:30:66:0.439:2	0/1:19,22:31:41:0.537:2	./.	./.	0/1:0,115:30:115:1.00:2	0/1:74,68:30:142:0.479:2	0/1:83,52:28:135:0.385:2	0/1:0,102:30:102:1.00:2	./.	./.	0/1:48,32:31:80:0.400:2
chr17	4721376	rs17854914	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,94:33:94:1.00:2	./.	0/1:39,38:32:77:0.494:2	0/1:64,38:33:102:0.373:2	./.	0/1:0,51:33:51:1.00:2	0/1:42,20:31:62:0.323:2	./.
chr17	4722133	rs3764900	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,31:30:73:0.425:2	./.	0/1:35,40:30:75:0.533:2	0/1:25,20:31:45:0.444:2	./.	0/1:0,84:31:85:1.00:2	0/1:25,26:30:51:0.510:2	0/1:32,36:28:69:0.529:2
chr17	4722785	rs1052751	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:25,28:30:53:0.528:2	0/1:11,6:30:17:0.353:2	./.	./.	./.	./.	./.	./.	./.	0/1:39,37:30:76:0.487:2	./.
chr17	4722876	rs3764897	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:20,21:31:41:0.512:2	0/1:6,15:32:21:0.714:2	./.	0/1:22,18:32:40:0.450:2	./.	./.	./.	./.	./.	0/1:14,21:32:35:0.600:2	./.
chr17	4796274	rs11556634	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,58:32:58:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,7:32:7:1.00:2	./.	./.	./.	0/1:75,33:33:108:0.306:2	./.	./.	0/1:0,81:31:81:1.00:2	./.
chr17	4796286	rs11556635	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:1,58:32:59:0.983:2	0/1:0,30:32:30:1.00:2	0/1:0,7:32:7:1.00:2	./.	./.	./.	0/1:66,33:31:99:0.333:2	./.	./.	0/1:0,80:32:80:1.00:2	./.
chr17	4799323	rs147980323	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,28:31:75:0.373:2	./.	./.	./.	./.	./.
chr17	4802317	rs55681486	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:18,5:29:23:0.217:2	0/1:11,7:31:18:0.389:2	./.	./.	./.	./.	0/1:4,8:32:12:0.667:2	./.	./.	0/1:23,11:31:34:0.324:2	./.
chr17	4802329	rs33978919	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:5,18:32:25:0.783:2	0/1:10,8:32:18:0.444:2	./.	0/1:21,23:31:44:0.523:2	./.	./.	./.	./.	./.	0/1:13,23:32:36:0.639:2	./.
chr17	4802571	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,18:31:29:0.621:2	./.	./.	./.	./.
chr17	4803082	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:31:77:0.052:2	./.	./.	./.	./.
chr17	4803711	rs35400274	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:17,13:31:30:0.433:2	0/1:9,5:30:14:0.357:2	./.	0/1:20,20:30:40:0.500:2	./.	./.	./.	./.	./.	0/1:14,11:29:25:0.440:2	./.
chr17	4804902	rs33970119	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,19:31:49:0.388:2	./.	./.	./.	./.	./.	./.	./.
chr17	4805551	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:32:89:0.045:2	./.	./.	./.
chr17	4836076	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,5:27:151:0.033:2	./.	./.	./.
chr17	4836105	rs138825640	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,53:32:135:0.393:2	./.	./.	./.	./.
chr17	4836381	rs6065	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:35,21:32:56:0.375:2	0/1:14,18:30:32:0.563:2	./.	./.	./.	./.	./.	./.	./.	0/1:30,35:32:65:0.538:2	./.
chr17	4837210	rs2586529	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,3:30:3:1.00:2	0/1:0,2:27:2:1.00:2	./.	0/1:0,3:26:3:1.00:2	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.
chr17	4837243	rs41466145	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:29:13:0.385:2	./.	./.	./.	./.	./.	./.	./.
chr17	4844242	rs34430513	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:28:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	4848297	rs117872328	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,4:32:16:0.250:2	./.	./.	./.	./.
chr17	4856376	rs238238	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,30:32:47:0.638:2	0/1:12,25:32:37:0.676:2	0/1:2,7:29:9:0.778:2	0/1:34,40:32:74:0.541:2	0/1:1,65:32:66:0.985:2	0/1:0,56:32:56:1.00:2	0/1:28,44:31:72:0.611:2	0/1:51,41:32:92:0.446:2	0/1:0,75:33:75:1.00:2	0/1:28,30:32:58:0.517:2	0/1:0,62:31:62:1.00:2
chr17	4856580	rs238239	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:47,50:31:97:0.515:2	0/1:19,19:29:38:0.500:2	./.	0/1:36,62:31:98:0.633:2	0/1:4,77:30:81:0.951:2	0/1:0,128:30:128:1.00:2	0/1:45,40:30:85:0.471:2	0/1:78,79:30:157:0.503:2	0/1:0,136:31:136:1.00:2	./.	0/1:0,114:30:114:1.00:2
chr17	4860353	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:32:60:0.067:2	./.	./.	./.
chr17	4863410	rs238224	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,55:32:55:1.00:2	0/1:0,21:32:21:1.00:2	./.	0/1:27,31:33:58:0.534:2	0/1:0,54:32:54:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,63:33:63:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,68:32:68:1.00:2
chr17	4875566	rs238230	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,31:30:54:0.574:2	0/1:0,48:30:48:1.00:2	0/1:0,32:28:32:1.00:2	0/1:27,20:29:47:0.426:2	0/1:30,22:29:52:0.423:2	0/1:0,40:30:40:1.00:2	./.	0/1:0,40:30:40:1.00:2
chr17	4875628	rs16942615	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:10,8:29:18:0.444:2	0/1:14,3:31:17:0.176:2	./.	./.	./.	./.	./.	./.	./.	0/1:15,12:33:27:0.444:2	./.
chr17	4883450	rs11078541	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:14,19:30:33:0.576:2	0/1:13,13:29:26:0.500:2	./.	./.	./.	./.	0/1:16,20:29:36:0.556:2	0/1:24,33:29:57:0.579:2	./.	0/1:13,25:30:38:0.658:2	./.
chr17	4883818	rs238234	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,11:29:11:1.00:2	0/1:0,7:27:7:1.00:2	./.	0/1:8,8:30:16:0.500:2	0/1:1,10:31:11:0.909:2	0/1:0,14:31:14:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,10:31:10:1.00:2	0/1:1,16:32:17:0.941:2	0/1:0,20:31:20:1.00:2	0/1:0,18:31:18:1.00:2
chr17	4892176	rs74744272	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:32,24:29:56:0.429:2	0/1:19,12:28:31:0.387:2	./.	./.	./.	./.	0/1:32,27:30:59:0.458:2	0/1:34,40:29:74:0.541:2	./.	0/1:26,22:32:48:0.458:2	./.
chr17	4904564	rs17707385	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:61,48:30:109:0.440:2	0/1:37,25:29:62:0.403:2	./.	./.	./.	./.	0/1:97,91:30:188:0.484:2	0/1:101,84:30:185:0.454:2	./.	0/1:66,53:31:119:0.445:2	./.
chr17	4924097	rs4790725	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:27,28:30:55:0.509:2	0/1:16,17:29:33:0.515:2	./.	./.	./.	./.	./.	./.	./.	0/1:29,28:29:57:0.491:2	./.
chr17	4926882	rs346828	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,14:30:14:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,38:30:38:1.00:2	0/1:1,42:29:44:0.977:2	0/1:15,12:31:27:0.444:2	0/1:39,23:28:62:0.371:2	0/1:0,25:29:25:1.00:2	./.	0/1:0,18:29:18:1.00:2
chr17	4927139	rs143987985	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,11:32:27:0.407:2	./.	./.	./.	./.	./.
chr17	4936336	rs72822610	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:24,26:32:50:0.520:2	0/1:21,15:31:36:0.417:2	./.	./.	./.	./.	0/1:45,34:31:79:0.430:2	0/1:50,46:31:96:0.479:2	./.	0/1:1,46:31:47:0.979:2	./.
chr17	4936898	rs2304445	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,33:31:58:0.579:2	./.	./.	./.	./.	./.	./.	./.
chr17	4936972	rs346821	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,20:30:35:0.571:2	0/1:18,9:31:27:0.333:2	./.	0/1:38,35:31:73:0.479:2	0/1:0,109:30:109:1.00:2	0/1:1,75:31:76:0.987:2	0/1:46,46:31:92:0.500:2	0/1:52,55:31:108:0.514:2	0/1:0,58:31:60:1.00:2	0/1:31,26:31:57:0.456:2	0/1:0,38:31:39:1.00:2
chr17	4937084	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,4:31:72:0.056:2	./.	./.	./.	./.	./.	./.	./.
chr17	4937351	rs56126318	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:46,36:33:82:0.439:2	0/1:27,20:32:47:0.426:2	./.	./.	./.	./.	./.	./.	./.	0/1:55,40:33:95:0.421:2	./.
chr17	4937575	rs346822	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:29:23:1.00:2	0/1:0,21:29:21:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,22:30:22:1.00:2	0/1:1,34:29:35:0.971:2	0/1:0,14:30:14:1.00:2	0/1:0,19:28:19:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,23:29:23:1.00:2
chr17	4996656	rs141452428	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:32:12:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	4996970	rs3744705	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:22,16:33:38:0.421:2	0/1:13,14:32:27:0.519:2	./.	./.	./.	./.	0/1:17,17:32:34:0.500:2	0/1:34,21:31:55:0.382:2	./.	0/1:14,19:32:33:0.576:2	./.
chr17	4997039	rs3744706	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:33:8:1.00:2	./.	./.	./.	./.	./.	0/1:38,31:34:69:0.449:2	./.	./.
chr17	4997176	rs3744707	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:32:6:0.500:2	./.	./.	./.	./.	./.	0/1:29,18:31:47:0.383:2	./.	./.
chr17	4997433	rs12600437	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:31:15:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	4997638	rs193098830	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,3:35:57:0.053:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	4997715	rs11078546	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:30:18:0.500:2	./.	./.	./.	./.	./.	0/1:69,66:31:135:0.489:2	./.	./.
chr17	4997787	rs10744994	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:32:73:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,81:31:81:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,87:32:87:1.00:2
chr17	4998030	rs8082301	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:32:69:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,56:33:56:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,95:33:95:1.00:2
chr17	4998228	rs9898284	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,14:30:27:0.519:2	./.	./.	./.	./.	./.	0/1:79,56:34:135:0.415:2	./.	./.
chr17	4998586	rs4790742	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,152:32:152:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,126:31:126:1.00:2	0/1:0,100:31:100:1.00:2	0/1:0,167:31:167:1.00:2	0/1:0,123:31:123:1.00:2	0/1:2,139:31:141:0.986:2	0/1:0,166:32:166:1.00:2	0/1:0,120:32:120:1.00:2	0/1:0,175:32:175:1.00:2
chr17	4998852	rs3744708	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,45:32:111:0.405:2	0/1:26,31:31:57:0.544:2	0/1:0,13:31:13:1.00:2	0/1:0,109:32:109:1.00:2	0/1:0,69:32:69:1.00:2	0/1:56,53:31:109:0.486:2	0/1:47,28:33:76:0.373:2	./.	0/1:0,110:33:110:1.00:2	0/1:59,38:33:97:0.392:2	0/1:80,63:33:143:0.441:2
chr17	4999207	rs1047966	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:42,17:33:59:0.288:2	0/1:22,11:32:33:0.333:2	./.	./.	./.	./.	0/1:41,23:32:64:0.359:2	0/1:45,22:30:67:0.328:2	./.	0/1:31,22:32:53:0.415:2	./.
chr17	5035687	rs201208699	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,57:31:120:0.475:2
chr17	5036224	rs72830922	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:78,8:31:86:0.093:2	0/1:40,7:32:47:0.149:2	./.	0/1:115,11:31:126:0.087:2	0/1:107,15:34:122:0.123:2	0/1:129,10:34:139:0.072:2	0/1:154,12:34:166:0.072:2	0/1:147,16:35:163:0.098:2	./.	0/1:113,12:33:125:0.096:2	0/1:114,8:33:122:0.066:2
chr17	5036274	rs78465432	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:76,16:31:92:0.174:2	0/1:46,12:32:58:0.207:2	./.	0/1:114,32:30:146:0.219:2	0/1:107,31:30:138:0.225:2	0/1:117,21:30:138:0.152:2	0/1:139,15:31:154:0.097:2	0/1:131,22:30:153:0.144:2	0/1:115,11:32:126:0.087:2	0/1:94,28:31:122:0.230:2	0/1:88,25:30:113:0.221:2
chr17	5036281	rs76236903	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:73,16:29:89:0.180:2	0/1:41,13:31:54:0.241:2	./.	0/1:108,33:31:141:0.234:2	0/1:93,32:31:126:0.256:2	0/1:109,22:31:131:0.168:2	0/1:134,17:31:151:0.113:2	0/1:113,23:31:136:0.169:2	0/1:116,11:33:127:0.087:2	0/1:87,34:32:121:0.281:2	0/1:80,27:29:108:0.252:2
chr17	5037195	rs74900103	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,7:33:69:0.101:2	./.	./.	0/1:93,8:32:101:0.079:2	0/1:104,14:32:118:0.119:2	./.	./.	./.
chr17	5039138	rs3213878	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:8,4:34:12:0.333:2	0/1:2,3:33:5:0.600:2	./.	./.	./.	./.	0/1:3,8:34:11:0.727:2	0/1:14,6:33:20:0.300:2	./.	0/1:3,4:33:7:0.571:2	./.
chr17	5042715	rs61740308	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:14,15:30:29:0.517:2	0/1:7,9:31:16:0.563:2	./.	./.	./.	./.	0/1:35,19:29:54:0.352:2	0/1:20,27:29:47:0.574:2	./.	0/1:15,19:31:34:0.559:2	./.
chr17	5042763	rs142493590	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,18:32:34:0.529:2	./.	./.	./.	./.	./.	./.
chr17	5042837	rs61745111	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:11,15:33:26:0.577:2	0/1:5,8:32:13:0.615:2	./.	./.	./.	./.	0/1:18,10:31:28:0.357:2	0/1:9,11:32:21:0.550:2	./.	0/1:13,11:33:24:0.458:2	./.
chr17	5042894	rs8073787	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:10,5:29:15:0.333:2	0/1:5,6:29:11:0.545:2	0/1:0,2:27:2:1.00:2	./.	0/1:2,5:30:7:0.714:2	./.	0/1:19,5:29:24:0.208:2	0/1:0,21:27:21:1.00:2	0/1:11,16:30:27:0.593:2	0/1:10,13:28:23:0.565:2	0/1:17,12:29:29:0.414:2
chr17	5044723	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,7:29:199:0.035:2	0/1:187,7:26:194:0.036:2	./.	./.	./.
chr17	5044762	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:32:135:0.030:2	./.	./.	./.	./.
chr17	5045706	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:156,5:29:161:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr17	5048010	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:30:113:0.035:2	./.	./.	./.	./.
chr17	5048032	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:33:147:0.027:2	./.	./.	./.	./.
chr17	5048736	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,5:33:199:0.025:2	./.	./.	./.
chr17	5048855	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,5:30:166:0.030:2	./.	./.	./.
chr17	5051864	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:28:197:0.026:2	./.	./.	./.
chr17	5058744	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:32:188:0.021:2
chr17	5058750	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:32:195:0.021:2
chr17	5058808	rs9899177	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,53:33:118:0.449:2	0/1:32,26:33:58:0.448:2	0/1:14,23:32:37:0.622:2	0/1:2,143:32:145:0.986:2	0/1:70,48:32:118:0.407:2	0/1:76,86:32:162:0.531:2	0/1:67,55:33:122:0.451:2	./.	0/1:1,160:33:161:0.994:2	0/1:86,63:33:149:0.423:2	0/1:4,168:33:172:0.977:2
chr17	5066230	rs146395567	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,17:32:53:0.321:2	./.	./.	./.	./.
chr17	5072077	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2
chr17	5072316	rs11658877	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,40:33:84:0.476:2	0/1:27,19:32:46:0.413:2	0/1:5,5:32:10:0.500:2	0/1:6,88:32:94:0.936:2	0/1:62,31:32:93:0.333:2	0/1:56,60:32:117:0.517:2	0/1:41,37:32:78:0.474:2	./.	0/1:7,73:32:80:0.913:2	0/1:44,36:32:80:0.450:2	0/1:9,85:32:94:0.904:2
chr17	5072333	rs3816913	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:47,37:33:84:0.440:2	0/1:24,21:33:45:0.467:2	./.	./.	./.	./.	0/1:47,26:33:73:0.356:2	0/1:72,48:32:120:0.400:2	./.	0/1:44,34:31:78:0.436:2	./.
chr17	5073852	rs144688577	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:30:11:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	5074103	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.
chr17	5074915	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,5:29:79:0.063:2	./.	./.	./.
chr17	5085389	rs148322165	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:83,4:28:87:0.046:2	0/1:47,4:33:51:0.078:2	./.	0/1:89,10:33:99:0.101:2	./.	0/1:129,7:32:136:0.051:2	0/1:111,6:32:117:0.051:2	./.	0/1:104,4:29:108:0.037:2	./.	./.
chr17	5085857	rs1730488	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:32:9:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	5085893	rs4115657	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,35:32:78:0.449:2	0/1:20,16:31:36:0.444:2	./.	0/1:2,46:33:48:0.958:2	0/1:32,18:31:50:0.360:2	0/1:25,28:31:53:0.528:2	0/1:20,16:32:36:0.444:2	./.	0/1:3,31:32:34:0.912:2	0/1:37,24:32:61:0.393:2	0/1:1,67:32:69:0.985:2
chr17	5086537	rs61750938	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,16:31:42:0.381:2	./.	./.	./.	./.	./.	./.
chr17	5087040	rs76720198	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,23:33:57:0.404:2	0/1:14,10:31:24:0.417:2	./.	0/1:2,59:33:61:0.967:2	0/1:10,26:31:36:0.722:2	0/1:26,25:32:51:0.490:2	0/1:20,13:32:33:0.394:2	./.	0/1:39,21:32:60:0.350:2	./.	0/1:27,46:33:73:0.630:2
chr17	5126674	rs2641256	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,30:32:72:0.417:2	0/1:35,25:31:60:0.417:2	./.	0/1:1,89:32:90:0.989:2	0/1:80,48:31:128:0.375:2	0/1:60,35:32:95:0.368:2	0/1:83,36:33:119:0.303:2	./.	0/1:2,100:34:102:0.980:2	0/1:52,48:33:100:0.480:2	0/1:0,84:32:84:1.00:2
chr17	5126689	rs2585271	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,33:33:69:0.478:2	0/1:40,20:32:60:0.333:2	./.	0/1:3,82:31:85:0.965:2	0/1:75,41:31:116:0.353:2	0/1:63,37:31:100:0.370:2	0/1:80,39:32:119:0.328:2	./.	0/1:2,106:33:108:0.981:2	0/1:54,53:33:107:0.495:2	0/1:0,88:32:88:1.00:2
chr17	5253845	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:30:41:0.098:2	./.
chr17	5264916	rs34594998	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,79:32:186:0.425:2	./.	./.	./.	./.	./.	0/1:67,59:32:126:0.468:2	0/1:82,83:33:165:0.503:2
chr17	5280440	rs3026101	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,22:29:24:0.917:2	0/1:0,16:29:16:1.00:2	0/1:0,2:32:2:1.00:2	./.	0/1:23,16:30:39:0.410:2	./.	./.	0/1:29,16:30:45:0.356:2	./.	0/1:16,14:31:30:0.467:2	./.
chr17	5280587	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	5284698	rs1143206	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,35:33:36:0.972:2	0/1:1,24:32:25:0.960:2	./.	./.	0/1:17,12:33:29:0.414:2	0/1:20,14:32:34:0.412:2	0/1:12,12:32:24:0.500:2	0/1:9,19:32:28:0.679:2	./.	0/1:14,24:32:38:0.632:2	./.
chr17	5284719	rs1065482	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,28:32:29:0.966:2	0/1:1,21:32:22:0.955:2	./.	./.	0/1:13,10:32:23:0.435:2	0/1:21,13:32:34:0.382:2	0/1:13,11:32:24:0.458:2	0/1:8,18:31:26:0.692:2	./.	0/1:8,22:32:30:0.733:2	./.
chr17	5284770	rs1065483	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,20:33:20:1.00:2	0/1:1,21:33:22:0.955:2	./.	./.	0/1:13,7:33:20:0.350:2	0/1:23,10:32:33:0.303:2	0/1:20,10:33:30:0.333:2	0/1:18,14:30:32:0.438:2	./.	0/1:14,19:32:33:0.576:2	./.
chr17	5289580	rs11209	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:1,121:32:122:0.992:2	0/1:0,90:32:90:1.00:2	0/1:0,18:32:18:1.00:2	./.	./.	0/1:44,77:32:121:0.636:2	./.	0/1:55,46:32:101:0.455:2	./.	0/1:51,69:33:120:0.575:2	./.
chr17	5290033	rs1071705	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:3,144:33:147:0.980:2	0/1:0,100:32:100:1.00:2	0/1:0,23:31:23:1.00:2	./.	0/1:83,59:32:142:0.415:2	0/1:89,72:32:161:0.447:2	0/1:85,79:33:164:0.482:2	0/1:89,88:32:177:0.497:2	./.	0/1:97,86:33:183:0.470:2	./.
chr17	5290361	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,27:32:74:0.365:2	./.	./.	./.
chr17	5290703	rs739768	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,111:31:111:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,17:29:17:1.00:2	./.	0/1:90,48:30:138:0.348:2	0/1:108,78:30:186:0.419:2	0/1:80,61:30:141:0.433:2	0/1:89,73:30:162:0.451:2	./.	0/1:82,65:30:147:0.442:2	./.
chr17	5292262	rs61753104	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,24:32:42:0.571:2	./.	./.	./.	./.	./.
chr17	5294976	rs14231	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,44:33:44:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,10:33:10:1.00:2	./.	0/1:36,26:31:62:0.419:2	0/1:40,30:32:70:0.429:2	0/1:38,20:32:58:0.345:2	0/1:33,30:32:63:0.476:2	./.	0/1:22,25:33:47:0.532:2	./.
chr17	5308377	rs2301739	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:71,59:33:130:0.454:2	0/1:60,68:33:128:0.531:2	0/1:17,8:32:25:0.320:2	./.	0/1:109,90:32:199:0.452:2	./.	0/1:121,77:33:198:0.389:2	0/1:129,65:33:194:0.335:2	./.	0/1:95,78:33:173:0.451:2	./.
chr17	5326089	rs1071648	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:4,67:31:71:0.944:2	0/1:1,40:32:41:0.976:2	0/1:0,13:29:13:1.00:2	./.	0/1:44,36:31:80:0.450:2	./.	./.	./.	./.	./.	./.
chr17	5326145	rs12761	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:3,43:33:46:0.935:2	0/1:1,35:33:36:0.972:2	0/1:0,12:33:12:1.00:2	./.	0/1:52,35:32:87:0.402:2	./.	./.	./.	./.	./.	./.
chr17	5326162	rs2189336	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:31:31:1.00:2	0/1:1,32:32:33:0.970:2	0/1:0,13:31:13:1.00:2	0/1:59,35:31:94:0.372:2	0/1:51,30:31:81:0.370:2	0/1:68,42:31:110:0.382:2	./.	0/1:74,41:31:115:0.357:2	./.	0/1:0,79:32:79:1.00:2	0/1:67,50:32:117:0.427:2
chr17	5338281	rs56014026	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,54:31:120:0.450:2	./.	./.	./.	./.	./.	./.
chr17	5347576	rs2074438	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:15,19:31:34:0.559:2	0/1:11,18:31:29:0.621:2	0/1:5,3:32:8:0.375:2	./.	./.	./.	0/1:86,4:34:90:0.044:2	./.	./.	./.	./.
chr17	5347788	rs75426953	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,30:31:65:0.462:2	0/1:16,16:32:32:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	5354204	rs11653658	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:40,25:33:65:0.385:2	0/1:26,26:33:52:0.500:2	0/1:2,6:32:8:0.750:2	./.	0/1:59,25:32:84:0.298:2	./.	./.	./.	./.	./.	./.
chr17	5356913	rs16954697	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:72,37:32:110:0.339:2	0/1:36,23:32:59:0.390:2	0/1:3,6:29:9:0.667:2	./.	0/1:78,69:31:147:0.469:2	./.	./.	./.	./.	./.	./.
chr17	5366947	rs8069315	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,38:32:72:0.528:2	./.	./.	./.
chr17	5392612	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,4:32:82:0.049:2	./.	./.	./.	./.	./.	./.	./.
chr17	5393461	rs1805467	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:38,25:32:63:0.397:2	0/1:22,10:31:33:0.313:2	./.	./.	./.	./.	./.	0/1:37,36:32:73:0.493:2	./.	./.	./.
chr17	5393524	rs1805468	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,16:33:32:0.500:2	./.	./.	./.	./.	./.	./.
chr17	5393603	rs14043	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,12:28:22:0.545:2	0/1:8,6:31:14:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	5394090	rs73973808	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,11:31:38:0.289:2	./.	./.	./.
chr17	5404062	rs116516994	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:31:11:0.273:2	./.	0/1:36,42:29:78:0.538:2	./.	./.	./.	./.	./.	./.
chr17	5404262	rs872569	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:6,6:32:12:0.500:2	./.	./.	./.	./.	./.	./.	0/1:8,5:31:13:0.385:2	0/1:9,9:33:18:0.500:2	./.	./.
chr17	5404270	rs55910638	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,8:27:19:0.421:2	0/1:10,10:30:20:0.500:2	./.	./.
chr17	5404500	rs114816590	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:26:5:0.800:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	5418799	rs2137722	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:33:5:0.600:2	./.	0/1:31,8:28:39:0.205:2	./.	./.	./.	./.	0/1:18,14:32:32:0.438:2	./.
chr17	5421115	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,5:34:142:0.035:2	./.	./.
chr17	5424906	rs11653832	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:32:6:1.00:2	./.	0/1:52,43:31:95:0.453:2	./.	./.	./.	./.	0/1:44,35:32:79:0.443:2	./.
chr17	5424991	rs11653580	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,16:31:36:0.444:2	./.	./.	./.	./.	0/1:21,17:29:38:0.447:2	./.
chr17	5425077	rs11651270	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,23:32:23:1.00:2	0/1:0,24:32:24:1.00:2	./.	0/1:19,8:32:27:0.296:2	0/1:12,6:32:18:0.333:2	0/1:13,18:33:31:0.581:2	0/1:0,24:33:24:1.00:2	0/1:17,19:33:36:0.528:2
chr17	5433841	rs56872041	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:29:4:1.00:2	./.	0/1:46,37:29:83:0.446:2	./.	./.	./.	./.	0/1:30,22:29:52:0.423:2	./.
chr17	5433966	rs35596958	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:32:7:1.00:2	./.	0/1:29,28:31:57:0.491:2	./.	./.	./.	./.	0/1:26,33:33:59:0.559:2	./.
chr17	5436263	rs2301582	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,63:30:64:1.00:2	0/1:38,21:30:59:0.356:2	./.	0/1:38,27:32:65:0.415:2	0/1:43,35:31:78:0.449:2	0/1:26,24:32:50:0.480:2	0/1:29,26:31:55:0.473:2	0/1:34,28:32:62:0.452:2
chr17	5437285	rs34733791	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,19:31:19:1.00:2	./.	0/1:88,55:30:143:0.385:2	./.	./.	./.	./.	0/1:77,55:32:132:0.417:2	./.
chr17	5440197	rs7215856	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,14:32:36:0.389:2	./.	./.	./.	./.	0/1:20,13:32:33:0.394:2	./.
chr17	5440221	rs7215868	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,15:30:35:0.429:2	./.	./.	./.	./.	0/1:21,11:32:32:0.344:2	./.
chr17	5440248	rs11657249	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,13:26:33:0.394:2	./.	./.	./.	./.	0/1:17,9:27:26:0.346:2	./.
chr17	5445243	rs11657747	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:32:11:0.636:2	./.	0/1:79,46:31:125:0.368:2	./.	./.	./.	./.	0/1:52,48:32:100:0.480:2	./.
chr17	5445314	rs12942931	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:31:8:0.625:2	./.	0/1:60,33:30:93:0.355:2	./.	./.	./.	./.	0/1:36,24:32:60:0.400:2	./.
chr17	5461671	rs52795654	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,10:34:23:0.435:2	./.	0/1:75,58:32:133:0.436:2	./.	./.	./.	./.	0/1:61,46:33:107:0.430:2	./.
chr17	5461847	rs61753136	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:31:14:0.571:2	./.	0/1:31,20:30:51:0.392:2	./.	./.	./.	./.	0/1:22,22:32:44:0.500:2	./.
chr17	5461895	rs61753137	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,7:27:15:0.467:2	./.	0/1:31,19:29:50:0.380:2	./.	./.	./.	./.	0/1:22,21:31:43:0.488:2	./.
chr17	5462135	rs12950235	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,26:31:56:0.464:2	./.	./.	./.	./.	0/1:24,15:33:39:0.385:2	./.
chr17	5462240	rs61753142	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,32:31:66:0.485:2	./.	0/1:38,16:31:54:0.296:2	./.	0/1:34,33:31:67:0.493:2	./.	./.
chr17	5462654	rs2001363	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,34:31:70:0.486:2	./.	./.	./.	./.	0/1:19,11:31:31:0.367:2	./.
chr17	5463279	rs11651595	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:33:7:0.857:2	./.	0/1:17,9:30:26:0.346:2	./.	./.	./.	./.	0/1:22,12:31:34:0.353:2	./.
chr17	5485367	rs12150220	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,21:29:34:0.618:2	0/1:1,32:30:33:0.970:2	./.	0/1:16,9:32:25:0.360:2	0/1:0,35:30:35:1.00:2	0/1:32,22:31:55:0.407:2	0/1:19,15:31:34:0.441:2	0/1:27,19:30:48:0.413:2
chr17	5487164	rs884367	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,34:30:75:0.453:2	./.	./.	0/1:25,35:29:60:0.583:2	./.
chr17	5991344	rs2302836	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:31:52:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,107:32:107:1.00:2	0/1:0,79:31:79:1.00:2	0/1:48,52:31:100:0.520:2	0/1:67,28:32:95:0.295:2	0/1:2,74:32:76:0.974:2	./.	0/1:39,29:31:68:0.426:2	0/1:35,44:32:79:0.557:2
chr17	6014176	rs2302837	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:29:62:1.00:2	0/1:0,40:29:40:1.00:2	0/1:0,5:27:5:1.00:2	0/1:0,83:29:83:1.00:2	0/1:0,71:29:71:1.00:2	0/1:0,89:29:89:1.00:2	0/1:0,82:30:82:1.00:2	0/1:2,106:29:108:0.981:2	0/1:0,90:30:90:1.00:2	0/1:0,83:30:83:1.00:2	0/1:45,44:29:89:0.494:2
chr17	6330068	rs2292546	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,29:28:29:1.00:2	0/1:0,30:28:30:1.00:2	./.	0/1:24,28:29:52:0.538:2	0/1:0,83:28:83:1.00:2	0/1:29,32:29:61:0.525:2	0/1:1,55:27:56:0.982:2	0/1:1,46:27:47:0.979:2	0/1:25,27:28:52:0.519:2	0/1:0,39:27:39:1.00:2	0/1:0,37:28:37:1.00:2
chr17	6331803	rs8075035	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,27:32:27:1.00:2	0/1:0,18:31:18:1.00:2	./.	0/1:24,24:33:48:0.500:2	0/1:0,39:32:39:1.00:2	0/1:31,19:33:50:0.380:2	./.	0/1:18,25:32:43:0.581:2	0/1:18,20:33:38:0.526:2	0/1:0,25:32:25:1.00:2	0/1:0,25:32:25:1.00:2
chr17	6337247	rs12449580	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,82:31:185:0.443:2	./.	./.	./.	./.	0/1:37,40:31:77:0.519:2	./.
chr17	6350824	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.	./.	./.	./.	./.
chr17	6350923	rs9913648	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,39:31:78:0.500:2	./.	./.	./.	./.
chr17	6351078	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:32:117:0.034:2	./.	./.	./.	./.
chr17	6364753	rs11654099	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:28:81:1.00:2	0/1:0,32:28:32:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,134:28:134:1.00:2	0/1:0,170:28:170:1.00:2	0/1:0,105:28:105:1.00:2	0/1:0,186:28:186:1.00:2	0/1:77,65:29:142:0.458:2	0/1:0,81:30:81:1.00:2	0/1:0,85:28:85:1.00:2	0/1:0,66:28:66:1.00:2
chr17	6368039	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,6:31:59:0.102:2	./.	./.	./.	./.	./.	./.	./.
chr17	6368086	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:33:56:0.071:2	./.	./.
chr17	6381939	rs938288	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,44:33:85:0.518:2	0/1:26,20:32:46:0.435:2	0/1:0,18:33:18:1.00:2	0/1:44,47:32:91:0.516:2	./.	0/1:58,41:32:99:0.414:2	./.	0/1:4,112:32:116:0.966:2	0/1:42,48:33:90:0.533:2	0/1:30,29:33:59:0.492:2	0/1:46,17:30:63:0.270:2
chr17	6381945	rs149964592	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,16:30:61:0.262:2
chr17	6386947	rs34897053	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,65:32:138:0.471:2	./.	./.	./.	./.	./.	./.
chr17	6406883	rs3809835	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:6,6:32:12:0.500:2	0/1:1,6:32:7:0.857:2	./.	0/1:3,12:32:15:0.800:2	./.	0/1:7,13:27:20:0.650:2	./.	0/1:6,9:32:15:0.600:2	./.	0/1:5,7:31:12:0.583:2	./.
chr17	6441376	rs28493751	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,35:32:90:0.389:2	0/1:27,16:31:43:0.372:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	6493198	rs1443417	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,7:31:16:0.438:2	0/1:48,33:31:81:0.407:2	0/1:47,28:29:75:0.373:2	0/1:59,50:29:109:0.459:2	0/1:41,42:29:83:0.506:2	0/1:43,36:29:80:0.456:2	0/1:0,86:31:86:1.00:2	0/1:33,28:29:61:0.459:2	0/1:0,88:29:88:1.00:2
chr17	6493228	rs199909867	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,26:31:68:0.382:2	0/1:31,20:31:51:0.392:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	6510239	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,7:28:151:0.046:2	./.
chr17	6511781	rs4796519	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,29:31:92:0.315:2	0/1:38,35:30:73:0.479:2	0/1:42,45:30:87:0.517:2	0/1:40,40:31:80:0.500:2	0/1:50,30:30:80:0.375:2	0/1:0,67:31:67:1.00:2	0/1:31,27:31:58:0.466:2	0/1:1,87:30:88:0.989:2
chr17	6513329	rs2304977	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,8:31:16:0.500:2	./.	./.	0/1:81,73:30:154:0.474:2	0/1:53,46:31:99:0.465:2	./.	0/1:70,53:31:123:0.431:2	0/1:64,48:31:113:0.429:2	0/1:0,130:31:130:1.00:2
chr17	6515387	rs2289642	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:55,4:30:59:0.068:2	./.	0/1:72,67:30:139:0.482:2	0/1:50,36:30:86:0.419:2	0/1:49,44:31:93:0.473:2	0/1:42,27:31:69:0.391:2	0/1:59,65:30:124:0.524:2	0/1:1,155:31:156:0.994:2	0/1:49,51:30:100:0.510:2	0/1:0,91:30:91:1.00:2
chr17	6515450	rs79720908	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,16:30:37:0.432:2	./.	./.	./.	./.	./.	./.
chr17	6515454	rs2289643	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:24:8:0.375:2	0/1:32,21:31:53:0.396:2	./.	0/1:17,15:32:32:0.469:2	0/1:13,14:31:27:0.519:2	0/1:15,13:31:28:0.464:2	0/1:0,48:33:48:1.00:2	0/1:19,23:31:42:0.548:2	0/1:0,40:32:40:1.00:2
chr17	6524298	rs9889363	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	0/1:6,5:26:11:0.455:2	0/1:3,8:28:11:0.727:2	0/1:7,5:30:12:0.417:2	./.	0/1:13,11:31:24:0.458:2	0/1:11,10:30:21:0.476:2	0/1:0,25:30:25:1.00:2
chr17	6531500	rs115325772	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,33:31:85:0.388:2	./.	./.	./.	./.	./.	./.
chr17	6531648	rs2072149	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:108,4:30:112:0.036:2	0/1:15,4:29:19:0.211:2	0/1:102,83:30:185:0.449:2	0/1:121,74:29:195:0.379:2	0/1:103,84:30:187:0.449:2	0/1:97,85:29:182:0.467:2	0/1:95,84:30:179:0.469:2	0/1:1,177:30:178:0.994:2	0/1:96,82:29:179:0.461:2	0/1:1,184:30:185:0.995:2
chr17	6531679	rs78453634	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:124,74:31:198:0.374:2	./.	./.	./.	./.	./.	./.
chr17	6531919	rs201379908	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,66:33:124:0.532:2	0/1:39,52:32:91:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	6538355	rs2301873	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,46:32:47:0.979:2	0/1:0,28:32:28:1.00:2	0/1:3,10:31:13:0.769:2	0/1:38,39:30:77:0.506:2	0/1:39,29:31:68:0.426:2	0/1:44,32:30:76:0.421:2	0/1:55,28:31:83:0.337:2	0/1:58,52:31:110:0.473:2	./.	0/1:25,45:31:70:0.643:2	./.
chr17	6544415	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,5:30:79:0.063:2	./.	./.	./.	./.	./.
chr17	6546259	rs2285999	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,71:33:73:0.986:2	0/1:2,40:33:42:0.952:2	./.	0/1:0,79:32:79:1.00:2	0/1:0,54:32:54:1.00:2	0/1:28,48:31:76:0.632:2	0/1:33,33:32:67:0.500:2	0/1:0,79:32:79:1.00:2	0/1:46,33:34:79:0.418:2	0/1:25,46:33:71:0.648:2	./.
chr17	6556022	rs7226265	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,13:31:45:0.289:2	./.	./.	./.	./.	0/1:23,30:32:53:0.566:2	./.	./.
chr17	6556326	rs4796532	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,10:30:22:0.455:2	0/1:13,6:31:19:0.316:2	./.	./.	./.	0/1:34,10:32:44:0.227:2	./.	./.
chr17	6556538	rs4796533	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,20:33:69:0.290:2	0/1:16,7:32:23:0.304:2	./.	./.	./.	0/1:50,22:33:72:0.306:2	0/1:28,31:33:59:0.525:2	0/1:55,19:33:74:0.257:2
chr17	6556541	rs4796343	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,20:32:69:0.290:2	0/1:16,7:32:23:0.304:2	./.	./.	./.	0/1:50,22:33:72:0.306:2	0/1:27,31:31:58:0.534:2	0/1:58,19:32:77:0.247:2
chr17	6597480	rs55698160	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,21:31:49:0.429:2	0/1:29,23:29:52:0.442:2	./.	0/1:26,45:30:72:0.634:2	./.	./.	./.	./.
chr17	6599095	rs56224509	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,40:32:74:0.541:2	./.	./.	0/1:35,42:32:77:0.545:2	./.	./.	./.	./.
chr17	6607318	rs72836208	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,36:32:84:0.429:2	./.	./.	0/1:91,65:32:156:0.417:2	./.	./.	./.	./.
chr17	6609974	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:135,4:31:140:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr17	6659456	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:29:53:0.075:2	./.	./.	./.	./.
chr17	6663753	rs34195599	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,73:32:160:0.456:2	./.	./.	./.
chr17	6663895	rs2271231	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,12:32:25:0.480:2	./.	0/1:121,65:32:186:0.349:2	0/1:105,75:32:180:0.417:2	./.	0/1:105,78:32:183:0.426:2	0/1:2,159:32:161:0.988:2	0/1:93,81:33:174:0.466:2	./.
chr17	6683215	rs4796555	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,37:31:87:0.425:2	./.	./.	0/1:0,76:31:76:1.00:2	0/1:28,35:31:63:0.556:2	./.
chr17	6683684	rs16956264	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,7:30:27:0.259:2	./.	./.	./.	./.	./.	./.
chr17	6683871	rs10401001	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,28:31:62:0.452:2	./.	./.	./.
chr17	6683878	rs1509123	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,11:31:31:0.355:2	0/1:11,17:32:28:0.607:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,23:32:40:0.575:2
chr17	6690161	rs17853331	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,30:30:106:0.283:2	./.	./.	0/1:0,84:32:84:1.00:2	0/1:60,22:31:82:0.268:2	./.
chr17	6690164	rs7213731	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,42:33:99:0.424:2	0/1:30,33:32:63:0.524:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,33:33:102:0.324:2
chr17	6704071	rs17804647	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:52,55:32:107:0.514:2	0/1:29,38:32:67:0.567:2	./.	./.	0/1:117,78:31:195:0.400:2	./.	0/1:111,84:31:195:0.431:2	./.	./.	./.	0/1:103,73:31:176:0.415:2
chr17	6704121	rs2271233	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,189:30:191:0.990:2	./.	./.	0/1:85,89:30:174:0.511:2	./.	./.	./.	./.
chr17	6716242	rs3744395	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,64:32:149:0.430:2	./.	./.	0/1:7,130:32:137:0.949:2	0/1:63,64:32:127:0.504:2	./.
chr17	6719202	rs34431552	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,84:30:134:0.627:2	./.	./.	./.
chr17	6733663	rs35472874	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:90,35:31:125:0.280:2	./.	./.	./.	./.	./.	./.
chr17	6733672	rs8078571	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,51:29:138:0.370:2	0/1:75,46:29:122:0.380:2	0/1:17,11:28:28:0.393:2	0/1:3,136:29:139:0.978:2	0/1:79,33:29:112:0.295:2	0/1:89,50:29:139:0.360:2	0/1:1,114:29:115:0.991:2	0/1:92,60:29:152:0.395:2	0/1:1,132:30:133:0.992:2	0/1:80,63:28:143:0.441:2	0/1:84,53:29:137:0.387:2
chr17	6902743	rs1042356	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,120:33:122:0.984:2	0/1:1,50:32:51:0.980:2	0/1:8,5:32:13:0.385:2	0/1:0,105:32:105:1.00:2	0/1:62,59:32:121:0.488:2	./.	0/1:74,61:32:135:0.452:2	./.	0/1:0,121:33:121:1.00:2	0/1:0,111:33:111:1.00:2	0/1:60,44:33:104:0.423:2
chr17	6902760	rs1126667	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,93:31:95:0.979:2	0/1:1,43:30:44:0.977:2	0/1:8,6:32:14:0.429:2	0/1:0,96:30:96:1.00:2	0/1:60,55:30:115:0.478:2	./.	0/1:69,46:30:115:0.400:2	./.	0/1:1,108:31:109:0.991:2	0/1:0,91:31:91:1.00:2	0/1:59,46:30:105:0.438:2
chr17	6904934	rs434473	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	0/1:13,16:33:29:0.552:2	0/1:1,48:33:49:0.980:2	0/1:19,26:33:45:0.578:2	0/1:3,41:33:44:0.932:2	./.	./.	0/1:28,21:32:51:0.429:2
chr17	6905061	rs1042357	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:30:26:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,5:30:5:1.00:2	0/1:1,41:30:42:0.976:2	0/1:37,16:31:53:0.302:2	./.	0/1:40,17:30:57:0.298:2	./.	0/1:0,40:31:40:1.00:2	0/1:0,27:30:27:1.00:2	0/1:18,24:27:42:0.571:2
chr17	6909838	rs2307214	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,11:33:25:0.440:2	./.	./.	./.	./.	./.	./.	./.
chr17	6913604	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,6:31:20:0.300:2	0/1:3,6:28:9:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	6913652	rs312462	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,11:30:23:0.478:2	./.	./.	./.	./.	./.	./.
chr17	6919093	rs14309	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,12:30:12:1.00:2	0/1:26,24:30:50:0.480:2	0/1:0,75:31:75:1.00:2	0/1:0,84:31:84:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,76:31:77:1.00:2	0/1:0,77:32:78:1.00:2	0/1:1,44:31:45:0.978:2	0/1:0,48:31:48:1.00:2
chr17	6929924	rs379478	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,114:31:114:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,154:32:154:1.00:2	0/1:0,177:32:177:1.00:2	0/1:0,140:31:140:1.00:2	0/1:0,183:32:183:1.00:2	0/1:0,155:31:155:1.00:2	0/1:1,131:32:132:0.992:2	0/1:0,95:32:95:1.00:2	0/1:0,97:32:98:1.00:2
chr17	6930118	rs61739754	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,14:30:33:0.424:2	./.	./.	./.	./.	./.	./.
chr17	6942108	rs11078663	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,39:32:41:0.951:2	0/1:0,31:32:31:1.00:2	./.	0/1:57,6:33:63:0.095:2	0/1:1,62:32:63:0.984:2	0/1:28,29:32:57:0.509:2	0/1:25,21:32:46:0.457:2	0/1:31,34:32:65:0.523:2	0/1:0,65:33:65:1.00:2	0/1:15,24:33:39:0.615:2	0/1:25,21:31:46:0.457:2
chr17	6942111	rs33979567	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,25:31:62:0.410:2	./.	./.	0/1:23,21:32:44:0.477:2	./.	./.	./.	0/1:22,23:30:45:0.511:2
chr17	6943266	rs4796576	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,31:31:31:1.00:2	0/1:1,24:31:25:0.960:2	0/1:0,4:32:4:1.00:2	./.	0/1:0,27:31:27:1.00:2	0/1:0,28:31:28:1.00:2	0/1:18,8:31:26:0.308:2	0/1:0,40:31:40:1.00:2	0/1:0,36:31:36:1.00:2	0/1:11,14:32:25:0.560:2	0/1:19,22:32:41:0.537:2
chr17	6979179	rs364569	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,36:30:56:0.643:2	0/1:13,14:30:27:0.519:2	0/1:7,5:29:12:0.417:2	0/1:38,26:31:65:0.406:2	0/1:30,37:30:67:0.552:2	0/1:40,38:30:78:0.487:2	0/1:36,34:29:70:0.486:2	0/1:94,4:31:98:0.041:2	0/1:33,42:31:75:0.560:2	./.	./.
chr17	6980105	rs35318160	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,66:31:139:0.475:2	./.	0/1:71,34:31:105:0.324:2	./.	./.	./.	./.	./.
chr17	6980273	rs16956478	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,45:31:98:0.459:2	./.	0/1:36,29:31:65:0.446:2	./.	./.	./.	./.	./.
chr17	6981353	rs732828	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:36,39:33:75:0.520:2	0/1:14,20:33:34:0.588:2	0/1:5,4:31:9:0.444:2	./.	0/1:1,94:33:95:0.989:2	./.	./.	./.	0/1:44,46:34:90:0.511:2	./.	0/1:46,44:33:90:0.489:2
chr17	6981397	rs90951	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,30:31:61:0.492:2	0/1:10,11:31:21:0.524:2	./.	0/1:47,29:31:76:0.382:2	0/1:1,76:30:77:0.987:2	0/1:43,40:31:83:0.482:2	0/1:60,42:31:102:0.412:2	./.	0/1:42,29:31:71:0.408:2	./.	0/1:37,33:30:70:0.471:2
chr17	7011144	rs62058755	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,83:31:172:0.483:2	./.	0/1:110,80:31:190:0.421:2	0/1:94,98:31:192:0.510:2	0/1:106,87:31:193:0.451:2	./.	0/1:69,54:30:123:0.439:2	./.
chr17	7011225	rs61731746	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,60:31:131:0.458:2	./.	./.	./.
chr17	7012077	rs2304979	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:32:13:0.462:2	./.	0/1:110,66:31:176:0.375:2	0/1:106,58:31:164:0.354:2	./.	0/1:114,62:32:176:0.352:2	./.	./.	0/1:0,68:32:68:1.00:2
chr17	7012079	rs2304978	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:32:13:0.462:2	./.	0/1:112,66:32:178:0.371:2	0/1:106,60:31:166:0.361:2	./.	0/1:115,61:32:176:0.347:2	./.	./.	0/1:0,68:32:68:1.00:2
chr17	7080316	rs55714927	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:32:8:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	7097670	rs41283393	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,17:31:43:0.395:2	0/1:4,9:32:13:0.692:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	7099811	rs17203281	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,87:32:87:1.00:2	0/1:0,54:32:54:1.00:2	./.	./.	./.	./.	./.	0/1:110,78:32:188:0.415:2	./.	0/1:52,57:32:109:0.523:2	./.
chr17	7100281	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:31:54:0.074:2	./.	./.	./.	./.	./.
chr17	7120419	rs2074220	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,105:30:167:0.629:2	./.
chr17	7121539	rs41283399	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,53:30:53:1.00:2	./.	./.
chr17	7127718	rs17671352	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,39:28:40:0.975:2	0/1:0,19:29:19:1.00:2	0/1:0,2:33:2:1.00:2	0/1:33,32:28:65:0.492:2	./.	./.	0/1:27,9:30:36:0.250:2	0/1:47,32:29:79:0.405:2	0/1:0,67:28:67:1.00:2	0/1:32,12:28:44:0.273:2	./.
chr17	7128292	rs148584617	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,30:30:67:0.448:2	./.	./.	./.	./.	./.	./.	./.
chr17	7129840	rs35594616	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,20:31:21:0.952:2	0/1:0,16:30:16:1.00:2	./.	0/1:15,21:32:36:0.583:2	./.	./.	0/1:15,15:32:30:0.500:2	0/1:21,16:32:37:0.432:2	0/1:0,33:33:33:1.00:2	0/1:8,9:32:17:0.529:2	./.
chr17	7129898	rs72839768	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,10:32:10:1.00:2	./.	./.
chr17	7132556	rs222837	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,24:31:44:0.545:2	0/1:12,9:32:21:0.429:2	0/1:1,8:31:9:0.889:2	0/1:32,21:31:53:0.396:2	./.	./.	0/1:41,24:31:65:0.369:2	0/1:33,37:31:70:0.529:2	0/1:0,72:32:72:1.00:2	0/1:0,33:32:33:1.00:2	./.
chr17	7133162	rs222836	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,14:31:27:0.519:2	0/1:8,5:31:13:0.385:2	0/1:0,12:31:12:1.00:2	0/1:31,20:30:51:0.392:2	./.	./.	0/1:16,30:31:46:0.652:2	0/1:35,36:31:71:0.507:2	./.	0/1:18,19:30:37:0.514:2	./.
chr17	7133609	rs2074216	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,16:33:39:0.410:2	0/1:16,16:32:32:0.500:2	0/1:0,5:32:5:1.00:2	0/1:35,25:32:60:0.417:2	0/1:0,33:32:33:1.00:2	./.	0/1:36,18:32:54:0.333:2	0/1:43,32:32:75:0.427:2	./.	0/1:25,27:32:52:0.519:2	./.
chr17	7134129	rs222835	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,31:29:69:0.449:2	0/1:28,18:28:46:0.391:2	0/1:0,13:30:13:1.00:2	0/1:58,27:32:86:0.318:2	0/1:0,95:30:95:1.00:2	./.	0/1:0,126:30:126:1.00:2	0/1:66,75:30:141:0.532:2	0/1:0,118:30:118:1.00:2	0/1:0,79:30:79:1.00:2	./.
chr17	7154534	rs414206	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:31:59:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,13:30:13:1.00:2	0/1:85,60:30:145:0.414:2	0/1:2,168:30:170:0.988:2	./.	0/1:3,137:31:140:0.979:2	0/1:100,92:30:192:0.479:2	0/1:55,52:31:107:0.486:2	0/1:0,89:31:89:1.00:2	./.
chr17	7154582	rs3744399	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,27:27:77:0.351:2	./.	./.	./.	./.
chr17	7155861	rs2521988	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,30:31:57:0.526:2	0/1:13,18:32:31:0.581:2	./.	0/1:32,44:31:76:0.579:2	0/1:0,104:30:104:1.00:2	./.	0/1:58,62:30:120:0.517:2	./.	./.	./.	./.
chr17	7162059	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,6:32:48:0.125:2	./.	./.	./.	./.	./.	./.	./.
chr17	7162085	rs76132587	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,27:29:46:0.587:2	./.	./.	./.	./.	./.	./.
chr17	7163723	rs3744400	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,17:30:43:0.395:2	./.
chr17	7163739	rs4562	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:30:38:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,3:31:3:1.00:2	0/1:29,24:32:53:0.453:2	0/1:0,55:30:55:1.00:2	./.	0/1:0,52:31:52:1.00:2	0/1:43,34:31:77:0.442:2	0/1:0,53:32:53:1.00:2	0/1:2,37:31:39:0.949:2	./.
chr17	7163815	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,4:26:20:0.200:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	7187123	rs5435	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:29:54:1.00:2	0/1:0,22:27:22:1.00:2	0/1:2,14:30:16:0.875:2	0/1:33,34:29:67:0.507:2	0/1:0,112:29:112:1.00:2	./.	0/1:1,101:29:102:0.990:2	0/1:57,43:29:101:0.430:2	0/1:0,77:30:77:1.00:2	0/1:26,21:30:47:0.447:2	./.
chr17	7192091	rs222842	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,116:32:118:0.983:2	0/1:0,63:31:63:1.00:2	0/1:7,8:32:15:0.533:2	0/1:81,77:31:158:0.487:2	0/1:0,112:30:112:1.00:2	0/1:95,58:30:153:0.379:2	0/1:2,126:32:128:0.984:2	0/1:92,65:31:157:0.414:2	0/1:0,128:32:128:1.00:2	0/1:72,65:31:137:0.474:2	./.
chr17	7216540	rs2270981	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:31:9:0.444:2	./.	./.	./.	./.	./.	./.	0/1:58,31:30:89:0.348:2	0/1:39,48:32:88:0.552:2
chr17	7217463	rs2292064	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,4:31:102:0.039:2	./.	./.	0/1:2,156:32:158:0.987:2	0/1:68,70:33:138:0.507:2	0/1:3,140:33:143:0.979:2	0/1:86,75:33:161:0.466:2	0/1:0,141:34:141:1.00:2	./.	0/1:74,67:32:141:0.475:2
chr17	7217892	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:159,6:28:165:0.036:2	./.	./.	./.	./.	./.	./.
chr17	7217900	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:147,6:31:153:0.039:2	./.	./.	./.	./.	./.	./.
chr17	7217914	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:131,6:30:137:0.044:2	./.	./.	./.	./.	./.	./.
chr17	7220881	rs34688574	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,11:32:13:0.846:2	./.	./.	./.	./.	./.	./.	0/1:46,37:32:83:0.446:2	0/1:45,53:30:98:0.541:2
chr17	7221197	rs118077107	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,37:33:89:0.416:2	./.	./.
chr17	7221385	rs1127440	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:32:11:0.273:2	./.	0/1:2,101:32:103:0.981:2	0/1:71,35:32:106:0.330:2	0/1:0,123:33:123:1.00:2	0/1:76,72:33:148:0.486:2	0/1:0,98:33:98:1.00:2	0/1:58,32:33:90:0.356:2	0/1:0,73:33:73:1.00:2
chr17	7222374	rs200109408	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,25:30:67:0.373:2	./.	./.	./.	./.	./.
chr17	7224921	rs3809813	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,55:32:105:0.524:2	./.	./.	0/1:34,47:32:81:0.580:2
chr17	7226957	rs35776863	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:33:15:0.600:2	./.	./.	./.	./.	./.	./.	0/1:41,48:32:89:0.539:2	0/1:56,36:31:92:0.391:2
chr17	7227198	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,16:29:33:0.485:2	./.
chr17	7230845	rs11655578	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,25:31:32:0.781:2	0/1:10,9:31:19:0.474:2	0/1:0,25:30:25:1.00:2	0/1:10,13:27:23:0.565:2	0/1:17,20:31:37:0.541:2	./.	./.
chr17	7245371	rs4796407	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:19,15:29:34:0.441:2	0/1:18,7:30:25:0.280:2	./.	0/1:4,43:30:47:0.915:2	./.	0/1:45,32:30:77:0.416:2	./.	./.	0/1:32,23:31:55:0.418:2	0/1:28,25:31:53:0.472:2	0/1:0,37:30:37:1.00:2
chr17	7254315	rs35985803	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:30:8:0.750:2	./.	./.	./.	./.	0/1:40,24:30:64:0.375:2	./.	./.	./.
chr17	7257455	rs17732672	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:31:10:0.600:2	./.	./.	./.	./.	0/1:44,28:31:72:0.389:2	./.	./.	./.
chr17	7286266	rs1554947	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,27:33:55:0.491:2	0/1:16,19:33:35:0.543:2	0/1:2,4:30:6:0.667:2	0/1:44,34:32:78:0.436:2	0/1:0,89:32:89:1.00:2	0/1:60,32:32:92:0.348:2	0/1:47,59:31:106:0.557:2	0/1:57,63:32:120:0.525:2	0/1:45,46:34:91:0.505:2	./.	./.
chr17	7286326	rs1554948	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,22:32:46:0.478:2	0/1:15,12:33:27:0.444:2	0/1:3,4:31:7:0.571:2	0/1:35,38:30:73:0.521:2	./.	0/1:28,35:30:63:0.556:2	./.	./.	0/1:35,33:31:68:0.485:2	0/1:29,19:31:48:0.396:2	0/1:0,52:32:52:1.00:2
chr17	7287832	rs61730812	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,65:30:128:0.508:2	./.	./.	./.	./.
chr17	7292107	rs6503018	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:31:64:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,80:30:80:1.00:2	./.	0/1:0,75:30:75:1.00:2	0/1:2,91:31:93:0.978:2	0/1:1,71:31:72:0.986:2	0/1:0,86:32:86:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,89:31:89:1.00:2
chr17	7293715	rs3744549	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:32:38:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,6:32:6:1.00:2	0/1:40,38:32:78:0.487:2	./.	0/1:0,72:31:72:1.00:2	0/1:2,75:32:77:0.974:2	0/1:50,53:32:103:0.515:2	0/1:0,62:32:62:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,62:32:63:1.00:2
chr17	7297452	rs4613118	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:32:64:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,8:33:8:1.00:2	0/1:68,38:32:106:0.358:2	./.	0/1:0,84:32:84:1.00:2	0/1:0,81:32:81:1.00:2	0/1:102,66:32:168:0.393:2	0/1:3,106:32:109:0.972:2	0/1:0,87:32:87:1.00:2	0/1:0,97:32:97:1.00:2
chr17	7311731	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.
chr17	7317697	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:32:71:0.056:2	./.	./.	./.	./.	./.
chr17	7318061	rs78355381	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,18:30:53:0.340:2	0/1:8,21:30:29:0.724:2	0/1:4,5:32:9:0.556:2	0/1:1,65:31:66:0.985:2	./.	./.	./.	./.	./.	0/1:2,44:30:46:0.957:2	0/1:33,26:28:60:0.441:2
chr17	7318396	rs2241233	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,84:30:84:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,102:31:102:1.00:2	0/1:0,130:30:130:1.00:2	0/1:0,127:31:128:1.00:2	0/1:0,114:30:114:1.00:2	0/1:1,147:30:149:0.993:2	0/1:0,110:31:110:1.00:2	0/1:2,70:32:72:0.972:2	0/1:27,33:30:60:0.550:2
chr17	7318935	rs12947017	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,79:31:154:0.513:2	0/1:53,46:31:99:0.465:2	./.	./.	./.	0/1:2,166:31:168:0.988:2	0/1:5,188:31:193:0.974:2	0/1:106,75:31:181:0.414:2	0/1:90,90:31:180:0.500:2	./.	./.
chr17	7320263	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.
chr17	7324788	rs33989543	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,14:34:23:0.609:2	./.	./.
chr17	7324852	rs34333422	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,5:33:8:0.625:2	./.	./.
chr17	7329134	rs72842820	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,45:32:117:0.385:2	0/1:29,37:32:66:0.561:2	0/1:7,17:32:24:0.708:2	0/1:0,158:32:158:1.00:2	./.	./.	./.	./.	./.	0/1:0,128:32:128:1.00:2	./.
chr17	7329632	rs13290	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:27:18:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,49:29:49:1.00:2	./.	0/1:0,34:29:34:1.00:2	0/1:1,69:29:70:0.986:2	0/1:37,18:29:55:0.327:2	./.	0/1:22,14:28:36:0.389:2	./.
chr17	7330489	rs139959375	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,40:32:75:0.533:2	./.	./.	./.	./.
chr17	7348625	rs17856697	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:9,6:31:15:0.400:2	0/1:14,8:31:22:0.364:2	0/1:4,4:32:8:0.500:2	./.	./.	0/1:2,56:33:58:0.966:2	0/1:5,45:31:50:0.900:2	0/1:45,20:31:65:0.308:2	./.	./.	./.
chr17	7366348	rs375158389	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,19:32:34:0.559:2	./.	./.	./.
chr17	7366619	rs34914463	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:22,9:31:31:0.290:2	0/1:10,5:31:15:0.333:2	./.	0/1:27,9:32:36:0.250:2	./.	./.	./.	./.	./.	0/1:14,10:30:24:0.417:2	./.
chr17	7366651	rs871990	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,16:29:50:0.320:2	./.	./.
chr17	7369111	rs201264238	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,23:9:161:0.143:2	0/1:131,28:12:159:0.176:2	./.	0/1:85,14:14:99:0.141:2	./.
chr17	7385454	rs3760422	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,23:30:56:0.411:2	./.	./.
chr17	7385479	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,6:27:92:0.065:2	./.	0/1:80,10:25:90:0.111:2
chr17	7385544	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:153,4:33:157:0.025:2	./.	./.	./.	./.	./.	./.
chr17	7385572	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,7:30:144:0.049:2	./.	./.	./.	./.	./.
chr17	7385617	rs201162806	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,6:34:130:0.046:2	./.	./.	./.	./.	./.
chr17	7385871	rs11658286	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,58:30:132:0.439:2	./.	./.	./.
chr17	7385895	rs185618416	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:34:90:0.044:2	./.
chr17	7385903	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:34:91:0.044:2	./.
chr17	7386055	rs4491591	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,130:32:130:1.00:2	0/1:1,153:32:154:0.994:2	0/1:0,88:32:88:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,169:32:169:1.00:2	0/1:1,97:33:98:0.990:2	0/1:0,98:33:99:1.00:2	0/1:0,84:32:84:1.00:2
chr17	7386090	rs7209977	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,51:31:123:0.415:2	0/1:39,32:30:71:0.451:2	0/1:9,5:31:14:0.357:2	0/1:184,9:31:193:0.047:2	./.	0/1:2,140:30:142:0.986:2	0/1:5,186:31:191:0.974:2	0/1:121,76:31:198:0.386:2	./.	./.	./.
chr17	7386091	.	C	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:183,8:30:191:0.042:2	./.	0/1:141,5:30:146:0.034:2	0/1:188,7:31:195:0.036:2	./.	./.	./.	./.
chr17	7386114	rs199996601	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:147,7:31:154:0.045:2	./.	./.	0/1:176,13:32:189:0.069:2	0/1:175,15:30:190:0.079:2	0/1:176,11:32:187:0.059:2	0/1:176,17:31:193:0.088:2	./.	./.	0/1:180,7:31:187:0.037:2	0/1:131,11:32:142:0.077:2
chr17	7386176	.	G	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,4:30:92:0.043:2	./.	./.	0/1:189,9:27:198:0.045:2	./.	0/1:176,13:30:189:0.069:2	./.	./.	./.	0/1:181,12:30:193:0.062:2
chr17	7386217	rs200349946	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:99,13:30:112:0.116:2	./.	./.	0/1:130,14:29:144:0.097:2	0/1:157,39:28:196:0.199:2	0/1:131,20:28:151:0.132:2	0/1:136,59:29:195:0.303:2	./.	./.	0/1:120,17:27:137:0.124:2	0/1:115,30:29:146:0.207:2
chr17	7386234	rs200251320	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:88,6:32:94:0.064:2	0/1:69,4:31:73:0.055:2	./.	0/1:123,5:31:128:0.039:2	0/1:138,30:30:168:0.179:2	0/1:130,13:30:143:0.091:2	0/1:117,44:31:161:0.273:2	./.	./.	0/1:106,15:30:121:0.124:2	0/1:93,24:31:117:0.205:2
chr17	7386272	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:74,5:31:79:0.063:2	./.	./.	0/1:93,5:26:98:0.051:2	0/1:92,6:28:98:0.061:2	0/1:108,5:27:113:0.044:2	0/1:105,13:29:118:0.110:2	./.	./.	0/1:85,4:29:89:0.045:2	./.
chr17	7386279	rs7219992	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:38,32:32:70:0.457:2	0/1:28,18:31:46:0.391:2	./.	./.	0/1:5,70:31:75:0.933:2	0/1:7,84:31:91:0.923:2	0/1:12,87:31:99:0.879:2	0/1:0,99:32:99:1.00:2	0/1:0,53:33:54:1.00:2	./.	0/1:2,57:32:59:0.966:2
chr17	7386280	rs7214088	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:38,32:32:70:0.457:2	0/1:30,17:32:47:0.362:2	./.	./.	0/1:5,72:31:77:0.935:2	0/1:7,83:32:91:0.922:2	0/1:12,87:32:99:0.879:2	0/1:0,99:32:99:1.00:2	0/1:0,54:33:54:1.00:2	./.	0/1:2,57:33:59:0.966:2
chr17	7399866	rs2301609	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,25:30:57:0.439:2	0/1:18,27:31:45:0.600:2	0/1:9,8:32:17:0.471:2	0/1:1,96:31:97:0.990:2	./.	./.	./.	./.	./.	0/1:0,75:32:75:1.00:2	./.
chr17	7400137	rs9898024	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:32:28:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,43:33:43:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,65:33:65:1.00:2	0/1:0,55:33:55:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,40:34:40:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,35:32:35:1.00:2
chr17	7400815	rs2228128	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,13:28:18:0.722:2	./.	./.	0/1:0,119:28:119:1.00:2	./.	./.	./.	./.	./.
chr17	7402600	rs2228129	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:26,15:27:41:0.366:2	0/1:14,17:30:31:0.548:2	0/1:1,3:34:4:0.750:2	./.	0/1:0,34:28:34:1.00:2	0/1:0,30:30:30:1.00:2	0/1:1,31:30:32:0.969:2	0/1:0,44:29:44:1.00:2	0/1:1,40:30:41:0.976:2	./.	0/1:2,29:29:31:0.935:2
chr17	7404107	rs7217707	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,120:32:121:0.992:2	0/1:0,62:32:62:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,139:32:139:1.00:2	0/1:0,172:31:172:1.00:2	0/1:0,155:32:155:1.00:2	0/1:0,177:32:177:1.00:2	0/1:1,180:32:181:0.994:2	0/1:2,153:33:155:0.987:2	0/1:0,108:32:108:1.00:2	0/1:0,132:32:132:1.00:2
chr17	7404991	rs2228130	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:32:76:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,117:32:117:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,133:32:133:1.00:2	0/1:0,92:32:92:1.00:2	0/1:1,107:32:108:0.991:2	0/1:0,107:33:107:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,122:32:122:1.00:2
chr17	7405937	rs2071504	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,40:32:94:0.426:2	./.	./.
chr17	7411770	rs2228132	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,57:32:92:0.620:2	0/1:28,30:32:58:0.517:2	0/1:9,15:31:24:0.625:2	0/1:0,129:32:129:1.00:2	./.	./.	./.	./.	./.	0/1:2,98:33:100:0.980:2	./.
chr17	7412368	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:195,4:32:199:0.020:2	./.	./.	./.	./.	./.	./.
chr17	7412403	rs2228133	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,82:30:188:0.436:2	./.	./.
chr17	7416599	rs55931722	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,28:29:78:0.364:2	0/1:30,19:30:49:0.388:2	0/1:8,6:29:14:0.429:2	0/1:54,43:28:97:0.443:2	./.	./.	./.	./.	./.	0/1:1,84:28:85:0.988:2	./.
chr17	7416683	rs9894023	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,97:28:97:1.00:2	0/1:0,53:28:53:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,120:29:120:1.00:2	0/1:0,135:29:135:1.00:2	0/1:0,101:29:101:1.00:2	0/1:0,179:29:179:1.00:2	0/1:0,142:30:143:1.00:2	0/1:0,125:29:125:1.00:2	0/1:1,89:29:90:0.989:2	0/1:1,110:28:111:0.991:2
chr17	7417086	rs4344809	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:30:57:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,77:30:77:1.00:2	0/1:0,70:30:70:1.00:2	0/1:0,71:30:71:1.00:2	0/1:0,71:30:71:1.00:2	0/1:0,50:30:50:1.00:2	0/1:1,50:30:51:0.980:2
chr17	7453505	rs62059804	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,10:32:23:0.435:2	0/1:5,10:32:15:0.667:2	0/1:0,2:33:2:1.00:2	0/1:14,10:31:24:0.417:2	./.	0/1:0,29:29:29:1.00:2	0/1:12,9:31:21:0.429:2	0/1:20,11:31:31:0.355:2	./.	./.	./.
chr17	7460517	rs3803798	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,10:31:32:0.313:2	0/1:10,10:32:20:0.500:2	0/1:1,3:26:4:0.750:2	0/1:12,20:32:32:0.625:2	0/1:0,61:32:61:1.00:2	./.	0/1:21,23:31:44:0.523:2	./.	0/1:0,41:33:41:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,25:32:25:1.00:2
chr17	7460559	rs4968189	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:32:22:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,3:34:3:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,10:32:10:1.00:2
chr17	7462469	rs142987696	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,14:29:31:0.452:2	./.	./.	./.	./.	./.	./.
chr17	7462555	rs11552708	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:56,26:32:82:0.317:2	0/1:22,14:32:36:0.389:2	0/1:4,12:32:16:0.750:2	./.	./.	./.	./.	./.	./.	0/1:33,59:33:92:0.641:2	./.
chr17	7462581	rs12942687	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,42:31:88:0.477:2	./.	./.
chr17	7462969	rs3803800	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:32:31:1.00:2	0/1:1,17:32:18:0.944:2	0/1:0,2:32:2:1.00:2	0/1:28,13:31:41:0.317:2	0/1:0,37:31:37:1.00:2	0/1:0,54:33:54:1.00:2	0/1:0,42:32:42:1.00:2	0/1:33,26:32:59:0.441:2	0/1:0,31:33:31:1.00:2	0/1:0,21:32:21:1.00:2	0/1:1,39:32:40:0.975:2
chr17	7469015	rs12942617	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,46:33:87:0.529:2	./.	./.
chr17	7477938	rs1057086	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:32:26:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,62:32:63:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,48:32:48:1.00:2
chr17	7478498	rs78553499	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,21:32:55:0.382:2	./.	./.	./.	./.	./.	./.	./.
chr17	7484101	rs9901673	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:56,45:33:101:0.446:2	0/1:36,26:31:62:0.419:2	0/1:15,3:31:18:0.167:2	./.	0/1:168,4:32:172:0.023:2	./.	./.	0/1:92,78:32:170:0.459:2	./.	0/1:75,56:32:131:0.427:2	./.
chr17	7484782	rs17607	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,44:29:112:0.393:2
chr17	7484812	rs9901675	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,56:30:126:0.444:2	./.	./.	./.
chr17	7490810	rs10852891	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:24,10:31:34:0.294:2	0/1:14,13:31:27:0.481:2	./.	./.	./.	./.	./.	0/1:32,24:31:56:0.429:2	./.	0/1:23,28:31:51:0.549:2	./.
chr17	7499227	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:32:134:0.030:2	./.	./.	./.
chr17	7529902	rs13894	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,32:33:71:0.451:2	./.	./.	./.
chr17	7530271	rs858520	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,13:32:25:0.520:2	0/1:0,25:32:25:1.00:2	./.	0/1:16,14:32:30:0.467:2	./.	0/1:0,26:33:26:1.00:2	./.	0/1:0,32:32:32:1.00:2
chr17	7530729	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:30:64:0.063:2	./.	./.	./.	./.
chr17	7536527	rs6259	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:34,25:31:59:0.424:2	0/1:18,14:32:32:0.438:2	./.	./.	./.	./.	./.	./.	./.	0/1:48,32:31:80:0.400:2	./.
chr17	7557419	rs1642763	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,28:32:81:0.346:2	0/1:23,11:30:34:0.324:2	0/1:8,5:29:13:0.385:2	0/1:73,45:32:118:0.381:2	0/1:0,53:32:53:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,79:32:80:1.00:2	0/1:37,41:32:78:0.526:2	0/1:0,82:32:82:1.00:2
chr17	7558895	rs117613045	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,47:30:97:0.485:2	./.	./.	./.	./.	./.	./.	./.
chr17	7572977	rs80184930	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,14:17:97:0.144:2
chr17	7572980	.	T	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,19:16:89:0.213:2	0/1:68,16:13:85:0.190:2	0/1:73,17:13:90:0.189:2	./.	0/1:74,11:15:87:0.129:2	./.	./.	0/1:83,14:15:97:0.144:2
chr17	7573969	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:32:103:0.039:2	./.	./.
chr17	7579389	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:29:97:0.041:2	./.
chr17	7579472	rs1042522	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:26:20:1.00:2	0/1:0,15:26:15:1.00:2	0/1:0,3:31:3:1.00:2	0/1:6,13:29:19:0.684:2	0/1:13,21:25:34:0.618:2	0/1:0,34:28:34:1.00:2	0/1:0,15:28:15:1.00:2	./.	0/1:0,21:28:21:1.00:2	0/1:7,17:26:24:0.708:2	0/1:0,16:26:16:1.00:2
chr17	7606722	rs7640	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,33:32:75:0.440:2	0/1:45,32:31:77:0.416:2	./.	0/1:47,25:31:72:0.347:2	./.	./.	0/1:39,25:31:64:0.391:2	./.
chr17	7608951	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	7611437	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,3:32:35:0.086:2	./.	./.	./.	./.	./.
chr17	7623125	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:29:107:0.037:2	./.	./.	./.	./.	./.
chr17	7630505	rs11867551	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,88:29:186:0.473:2	./.	./.	0/1:107,81:30:188:0.431:2	./.
chr17	7637938	rs144934136	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,93:32:175:0.531:2	./.	./.	./.
chr17	7644265	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:28:48:0.083:2	./.	./.	./.	./.	./.
chr17	7667554	rs146533727	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,86:32:168:0.512:2	0/1:46,39:30:85:0.459:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	7673928	rs9909288	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:27:8:0.375:2	./.	./.	0/1:27,44:29:71:0.620:2	0/1:46,33:30:79:0.418:2	0/1:38,38:29:76:0.500:2	0/1:39,39:30:78:0.500:2	0/1:29,29:28:58:0.500:2	./.
chr17	7680159	rs62059684	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,22:32:50:0.440:2	0/1:17,9:32:26:0.346:2	./.	0/1:43,35:31:79:0.449:2	0/1:1,99:31:100:0.990:2	0/1:38,40:31:78:0.513:2	./.	0/1:50,48:32:98:0.490:2	0/1:35,29:33:64:0.453:2	./.	./.
chr17	7681412	rs7359662	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:33:69:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,102:32:103:1.00:2	0/1:1,99:32:100:0.990:2	0/1:0,110:32:110:1.00:2	0/1:1,122:32:123:0.992:2	0/1:0,161:32:161:1.00:2	0/1:0,107:34:107:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,125:32:125:1.00:2
chr17	7682605	rs17806045	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,8:31:17:0.471:2	./.	./.	./.	0/1:109,80:31:189:0.423:2	0/1:101,74:31:175:0.423:2	./.	0/1:77,54:32:131:0.412:2	./.
chr17	7697645	rs11656500	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,32:31:76:0.421:2
chr17	7701525	rs35295135	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,51:30:104:0.490:2	./.	./.	./.	./.	./.	./.
chr17	7719945	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:34:85:0.047:2	./.	./.
chr17	7722365	rs7213894	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,30:32:30:1.00:2	0/1:0,18:31:18:1.00:2	./.	0/1:0,40:31:40:1.00:2	./.	0/1:15,17:31:32:0.531:2	0/1:25,28:30:53:0.528:2	0/1:0,52:30:52:1.00:2	0/1:0,35:31:35:1.00:2	./.	0/1:12,21:31:33:0.636:2
chr17	7724565	rs201570837	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,8:19:109:0.073:2
chr17	7735063	rs57985356	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,56:32:142:0.394:2	./.
chr17	7735934	rs61745181	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:25,19:32:44:0.432:2	0/1:4,18:31:22:0.818:2	./.	./.	./.	./.	./.	./.	./.	0/1:14,18:33:32:0.563:2	./.
chr17	7736242	rs116930996	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,38:31:81:0.469:2	./.	./.	./.	./.	./.
chr17	7736480	rs78354379	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,8:30:15:0.533:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	7748939	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:34:63:0.063:2	./.	./.	./.	./.
chr17	7748968	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,6:28:55:0.111:2	./.
chr17	7750010	rs79548905	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,42:28:71:0.592:2	./.	./.	./.	./.	./.	./.	./.
chr17	7750232	rs11078709	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,24:32:25:0.960:2	0/1:0,14:32:14:1.00:2	./.	./.	./.	0/1:24,32:29:56:0.571:2	./.	./.	./.	0/1:12,15:32:27:0.556:2	./.
chr17	7750436	rs2270516	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,27:32:52:0.519:2	0/1:21,23:32:44:0.523:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	7750695	rs202192559	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:29:14:0.571:2	./.	./.	./.	./.	./.	./.	./.
chr17	7751050	rs62059713	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.	./.	./.
chr17	7751138	rs61031471	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:22:5:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	7751388	rs3744247	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,37:31:93:0.398:2	./.	./.	./.	./.	./.
chr17	7751751	rs3744248	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,11:31:32:0.344:2	./.	./.	./.	./.	./.
chr17	7751778	rs3744249	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:6,4:28:10:0.400:2	0/1:3,5:30:8:0.625:2	./.	./.	./.	./.	./.	./.	./.	0/1:4,7:29:11:0.636:2	./.
chr17	7753139	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:31:65:0.062:2	./.	./.	./.	./.	./.
chr17	7753169	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,4:31:53:0.075:2	./.	./.	./.	./.	./.	./.
chr17	7754460	rs3736306	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,24:30:41:0.585:2	0/1:12,15:30:27:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	7754993	rs12939056	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:30:6:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,17:28:17:1.00:2	0/1:22,15:29:37:0.405:2	0/1:0,14:29:14:1.00:2	0/1:0,34:29:34:1.00:2	0/1:8,7:32:15:0.467:2	0/1:7,10:29:17:0.588:2	./.
chr17	7758522	rs2270518	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,22:31:73:0.301:2	0/1:34,19:32:53:0.358:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	7760397	rs4724	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:37,38:32:75:0.507:2	0/1:42,19:32:62:0.311:2	./.	./.	./.	./.	./.	./.	./.	0/1:49,53:31:102:0.520:2	./.
chr17	7760704	rs8522	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,64:29:64:1.00:2	0/1:0,31:28:31:1.00:2	./.	./.	./.	0/1:50,66:29:116:0.569:2	./.	./.	./.	0/1:53,45:27:98:0.459:2	./.
chr17	7761512	rs12453250	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:32,27:31:59:0.458:2	0/1:13,13:30:26:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:38,19:29:57:0.333:2	./.
chr17	7761558	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:29:97:0.041:2	./.	./.	./.
chr17	7761926	rs3744252	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,42:30:81:0.519:2	./.	0/1:43,43:30:86:0.500:2
chr17	7762832	rs62059715	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,60:32:98:0.612:2	./.	./.	./.	./.
chr17	7762868	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:33:124:0.032:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	7796815	rs150799852	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,6:16:17:0.353:2	./.	./.	./.	0/1:17,7:19:25:0.292:2	./.	./.	0/1:9,5:19:14:0.357:2
chr17	7802454	rs11651304	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,35:31:80:0.438:2	./.	0/1:35,39:28:74:0.527:2
chr17	7803310	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:32:169:0.024:2	./.	./.
chr17	7807200	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:33:147:0.027:2	./.	./.	./.	./.	./.
chr17	7809271	rs201727011	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,5:24:56:0.091:2	./.
chr17	7810214	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:29:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	7834877	rs140061571	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,17:32:52:0.327:2	./.	./.	./.	./.
chr17	7843053	rs11078719	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:17,13:30:30:0.433:2	0/1:14,6:31:20:0.300:2	./.	0/1:14,21:31:35:0.600:2	./.	0/1:33,20:31:53:0.377:2	0/1:12,22:31:34:0.647:2	0/1:28,24:30:52:0.462:2	0/1:22,20:32:42:0.476:2	0/1:0,25:31:25:1.00:2	0/1:0,40:32:40:1.00:2
chr17	7847955	rs11650083	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:28,23:31:51:0.451:2	0/1:20,9:31:29:0.310:2	./.	0/1:39,22:31:61:0.361:2	./.	0/1:44,43:30:87:0.494:2	0/1:42,37:31:79:0.468:2	0/1:37,33:30:70:0.471:2	0/1:38,25:32:63:0.397:2	0/1:0,42:31:42:1.00:2	0/1:0,45:32:45:1.00:2
chr17	7849087	rs4462665	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:21,15:28:36:0.417:2	0/1:14,6:27:20:0.300:2	./.	0/1:19,18:27:37:0.486:2	./.	0/1:19,20:29:39:0.513:2	0/1:16,22:26:38:0.579:2	0/1:24,18:27:42:0.429:2	0/1:15,19:28:34:0.559:2	0/1:0,27:27:27:1.00:2	0/1:0,36:27:36:1.00:2
chr17	7906519	rs61749665	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:23:11:0.545:2	./.	0/1:8,7:31:15:0.467:2	0/1:4,4:32:8:0.500:2	./.	./.	0/1:0,2:32:2:1.00:2	0/1:2,9:31:11:0.818:2
chr17	7907189	rs3829789	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:28,10:31:38:0.263:2	0/1:11,7:32:18:0.389:2	./.	./.	./.	./.	./.	0/1:32,27:30:60:0.458:2	./.	./.	./.
chr17	7907424	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,6:34:10:0.600:2	./.	./.	./.
chr17	7915912	rs34598902	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,13:31:21:0.619:2	0/1:8,6:32:14:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	7915920	rs56130505	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,14:32:23:0.609:2	./.	./.	./.
chr17	7917279	rs8069344	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,36:31:88:0.409:2	./.	./.	./.
chr17	7948175	rs6503070	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,71:29:71:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,9:30:9:1.00:2	./.	0/1:75,86:29:161:0.534:2	0/1:59,51:28:110:0.464:2	0/1:3,132:29:135:0.978:2	0/1:68,82:29:151:0.547:2	0/1:49,43:30:92:0.467:2	./.	0/1:46,43:30:89:0.483:2
chr17	7950319	rs140623478	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,43:33:98:0.439:2	./.	./.
chr17	7950377	rs11541083	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,34:32:35:1.00:2	0/1:0,22:31:22:1.00:2	0/1:3,3:31:6:0.500:2	./.	0/1:22,20:30:42:0.476:2	./.	0/1:0,39:30:39:1.00:2	0/1:25,19:30:44:0.432:2	./.	./.	0/1:23,30:30:53:0.566:2
chr17	7950952	rs9898751	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,37:33:38:0.974:2	0/1:0,27:32:27:1.00:2	./.	./.	0/1:56,37:31:93:0.398:2	0/1:25,50:32:75:0.667:2	0/1:2,69:32:71:0.972:2	0/1:43,37:32:80:0.463:2	./.	./.	0/1:24,19:32:43:0.442:2
chr17	7950958	rs61312861	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,51:30:79:0.646:2	./.	./.	./.	./.	./.
chr17	7951819	rs4792147	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,18:29:18:1.00:2	0/1:0,11:29:11:1.00:2	./.	./.	0/1:1,36:28:37:0.973:2	0/1:25,17:28:42:0.405:2	0/1:0,23:28:23:1.00:2	0/1:22,17:29:39:0.436:2	0/1:22,19:29:41:0.463:2	./.	0/1:11,17:29:28:0.607:2
chr17	7976138	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:32:141:0.028:2	./.
chr17	7980404	rs112835279	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,42:32:110:0.382:2	./.	./.
chr17	7983799	rs2304907	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,100:31:100:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,14:32:14:1.00:2	./.	0/1:43,54:32:97:0.557:2	0/1:55,63:32:118:0.534:2	0/1:78,50:32:128:0.391:2	./.	0/1:62,67:33:129:0.519:2	./.	./.
chr17	7983969	rs2304908	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,64:31:64:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,14:33:14:1.00:2	./.	0/1:26,26:32:52:0.500:2	0/1:32,33:33:66:0.508:2	0/1:43,21:32:64:0.328:2	./.	0/1:45,41:33:86:0.477:2	./.	./.
chr17	7984157	rs3816263	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,9:28:14:0.643:2	./.	./.	0/1:20,7:26:27:0.259:2
chr17	7984563	rs142770482	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,40:32:105:0.381:2	./.	./.
chr17	7999957	rs3809881	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,81:31:183:0.445:2	0/1:52,54:31:106:0.509:2	0/1:23,12:31:35:0.343:2	0/1:99,73:31:172:0.424:2	./.	0/1:101,71:31:172:0.413:2	./.	0/1:96,69:31:165:0.418:2	0/1:1,157:32:158:0.994:2	0/1:108,67:31:175:0.383:2	0/1:1,156:31:158:0.994:2
chr17	8018977	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:31:121:0.033:2	./.	./.
chr17	8020233	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.	./.
chr17	8021608	rs3027229	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,36:32:67:0.537:2	0/1:0,83:34:83:1.00:2	./.	./.
chr17	8025712	rs1348325	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,59:31:126:0.468:2	0/1:0,106:33:106:1.00:2	./.	./.
chr17	8026364	rs61731639	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,63:30:126:0.500:2	0/1:60,52:30:112:0.464:2	./.	./.	./.	./.	./.	./.
chr17	8046664	rs112474322	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,32:30:67:0.478:2	./.	./.	./.	./.
chr17	8046680	rs112185134	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,46:31:104:0.442:2	./.	./.	./.	./.
chr17	8046737	rs112854368	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,53:29:137:0.387:2	./.	./.	./.	./.
chr17	8046772	rs2585405	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,11:34:11:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,98:32:98:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,95:33:96:1.00:2	0/1:1,65:32:66:0.985:2	0/1:82,42:33:124:0.339:2	0/1:76,27:32:103:0.262:2	0/1:0,60:32:60:1.00:2
chr17	8047043	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,11:11:57:0.193:2	./.	./.	./.	./.	./.	./.
chr17	8047060	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,20:10:89:0.225:2	./.	./.	./.	0/1:39,12:13:52:0.235:2	0/1:37,13:10:50:0.260:2	./.
chr17	8047081	rs112980285	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,65:30:103:0.631:2	./.	./.	./.	./.	./.
chr17	8048169	rs2253820	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:28:36:1.00:2	0/1:0,23:29:23:1.00:2	0/1:0,6:28:6:1.00:2	0/1:0,56:28:56:1.00:2	0/1:75,48:27:123:0.390:2	0/1:0,65:28:65:1.00:2	0/1:42,47:29:89:0.528:2	0/1:2,86:28:88:0.977:2	0/1:36,30:29:66:0.455:2	0/1:46,35:28:81:0.432:2	0/1:0,34:27:34:1.00:2
chr17	8048283	rs2735611	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,11:29:11:1.00:2	0/1:0,8:31:9:1.00:2	./.	0/1:0,18:31:18:1.00:2	0/1:11,9:31:20:0.450:2	0/1:0,10:30:10:1.00:2	0/1:10,5:32:15:0.333:2	0/1:0,13:31:13:1.00:2	0/1:9,11:32:20:0.550:2	0/1:9,5:32:14:0.357:2	0/1:0,5:28:6:1.00:2
chr17	8049744	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,4:30:73:0.055:2	./.	./.	./.	./.	./.	./.	./.
chr17	8052915	rs74795714	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	0/1:29,30:30:59:0.508:2	./.	./.	./.	./.	./.
chr17	8053085	rs3027178	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:34:2:1.00:2	0/1:1,21:32:22:0.955:2	0/1:16,18:31:34:0.529:2	0/1:10,13:32:23:0.565:2	0/1:15,20:31:35:0.571:2	0/1:11,18:31:30:0.621:2	./.	./.	0/1:0,16:32:16:1.00:2
chr17	8053344	rs35826160	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,14:31:34:0.412:2	./.	./.	./.	./.
chr17	8064779	rs75664430	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:33:5:1.00:2	0/1:0,38:31:38:1.00:2	./.	0/1:26,19:32:45:0.422:2	0/1:1,36:31:37:0.973:2	0/1:35,21:31:56:0.375:2	./.	./.	0/1:0,46:31:46:1.00:2
chr17	8065788	rs200302470	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,10:28:39:0.256:2	./.	./.	./.	./.
chr17	8092694	rs8531	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,9:32:9:1.00:2	0/1:0,6:31:6:1.00:2	./.	0/1:0,17:33:17:1.00:2	0/1:5,4:30:9:0.444:2	0/1:10,4:31:14:0.286:2	0/1:0,8:32:8:1.00:2	0/1:0,9:32:9:1.00:2	0/1:4,10:33:14:0.714:2	0/1:8,5:33:13:0.385:2	0/1:0,2:33:2:1.00:2
chr17	8094020	rs2278636	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,51:31:51:1.00:2	0/1:0,43:32:43:1.00:2	./.	./.	0/1:38,48:31:87:0.558:2	./.	./.	0/1:54,38:32:92:0.413:2	0/1:56,47:33:103:0.456:2	0/1:40,41:32:81:0.506:2	./.
chr17	8094174	rs146669849	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,10:31:30:0.333:2	./.	./.	./.	./.
chr17	8108238	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:31:70:0.057:2	./.
chr17	8108331	rs1059476	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:30:62:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,7:30:7:1.00:2	0/1:1,93:30:94:0.989:2	0/1:0,95:30:95:1.00:2	0/1:68,36:29:104:0.346:2	0/1:1,105:30:106:0.991:2	0/1:2,80:30:82:0.976:2	0/1:40,43:30:83:0.518:2	0/1:65,40:30:105:0.381:2	0/1:0,71:30:71:1.00:2
chr17	8108339	rs2241909	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,58:32:58:1.00:2	0/1:0,31:32:31:1.00:2	./.	./.	0/1:0,79:32:79:1.00:2	./.	0/1:43,57:32:100:0.570:2	0/1:50,27:32:77:0.351:2	0/1:34,37:33:71:0.521:2	0/1:60,34:33:94:0.362:2	./.
chr17	8110585	rs150216235	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,73:32:142:0.514:2	./.	./.
chr17	8131628	rs201788219	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,21:33:33:0.636:2	./.
chr17	8132763	rs3826543	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:29:47:1.00:2	0/1:0,23:27:23:1.00:2	0/1:0,10:28:10:1.00:2	0/1:1,46:28:47:0.979:2	0/1:26,18:27:44:0.409:2	0/1:38,27:28:66:0.415:2	0/1:1,61:29:62:0.984:2	0/1:1,76:29:77:0.987:2	0/1:28,27:30:56:0.491:2	0/1:41,18:29:59:0.305:2	0/1:1,58:29:59:0.983:2
chr17	8135061	rs3027238	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:28:57:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,45:29:45:1.00:2	0/1:0,65:30:65:1.00:2	0/1:0,62:28:62:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,54:30:55:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,66:28:66:1.00:2
chr17	8135444	rs62620189	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,5:34:39:0.128:2	./.	./.	./.	./.
chr17	8135492	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,4:32:50:0.080:2	./.	./.	./.	./.	./.	./.	./.
chr17	8138569	rs62624978	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,8:32:21:0.381:2	./.	./.	./.	./.
chr17	8139463	rs74506939	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,13:29:14:0.929:2	0/1:1,96:27:97:0.990:2	./.	0/1:50,60:28:110:0.545:2	0/1:52,26:28:79:0.333:2	0/1:55,65:27:120:0.542:2	./.	./.	0/1:3,97:28:100:0.970:2
chr17	8157310	rs9891699	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:33:72:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,117:32:117:1.00:2	0/1:49,43:32:92:0.467:2	0/1:0,99:32:99:1.00:2	0/1:3,122:32:125:0.976:2	0/1:47,52:33:99:0.525:2	0/1:52,51:33:103:0.495:2	0/1:0,92:33:92:1.00:2
chr17	8161149	rs4791641	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,44:31:45:0.978:2	0/1:1,25:31:26:0.962:2	./.	./.	0/1:19,14:30:33:0.424:2	./.	./.	0/1:26,17:31:43:0.395:2	0/1:36,14:32:50:0.280:2	0/1:30,21:32:51:0.412:2	./.
chr17	8166458	rs35217368	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,7:30:8:0.875:2	0/1:26,16:30:42:0.381:2	./.	0/1:18,21:30:39:0.538:2	0/1:32,24:31:57:0.429:2	./.	./.	./.	./.
chr17	8166498	rs34778863	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,26:32:60:0.433:2	./.	./.	./.	./.
chr17	8167600	rs11078738	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:28:31:1.00:2	0/1:0,31:28:31:1.00:2	0/1:0,2:29:2:1.00:2	0/1:0,32:29:32:1.00:2	0/1:31,20:27:51:0.392:2	0/1:14,19:29:33:0.576:2	0/1:26,12:28:38:0.316:2	0/1:2,49:29:51:0.961:2	0/1:29,17:28:46:0.370:2	0/1:21,14:27:35:0.400:2	0/1:0,36:28:36:1.00:2
chr17	8168224	rs9902252	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:29:52:1.00:2	0/1:0,26:29:26:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,70:30:70:1.00:2	0/1:47,40:29:87:0.460:2	0/1:36,41:29:77:0.532:2	0/1:52,27:29:79:0.342:2	0/1:0,87:29:87:1.00:2	0/1:31,18:33:49:0.367:2	0/1:42,22:31:64:0.344:2	0/1:0,65:29:65:1.00:2
chr17	8168384	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,18:31:29:0.621:2	./.	./.	./.	./.	./.	./.
chr17	8170141	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:87,4:32:91:0.044:2	./.	./.	./.	./.	./.	./.
chr17	8170185	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:32:44:0.091:2	./.	./.	./.	./.	./.
chr17	8170959	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:31:118:0.034:2
chr17	8172506	rs62637606	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,40:33:74:0.541:2	./.	./.	./.	./.
chr17	8192922	rs869773	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,15:30:52:0.288:2	./.	./.	./.	./.	./.	./.
chr17	8192970	rs111417202	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,23:29:36:0.639:2	./.	./.	./.	./.
chr17	8215534	rs3744651	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,56:31:93:0.602:2	0/1:21,27:32:48:0.563:2	0/1:0,16:31:16:1.00:2	0/1:0,137:31:137:1.00:2	0/1:78,55:31:133:0.414:2	0/1:83,80:31:163:0.491:2	0/1:69,74:32:143:0.517:2	0/1:82,78:31:160:0.488:2	0/1:56,93:32:150:0.624:2	./.	0/1:0,129:31:129:1.00:2
chr17	8215744	rs149692144	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:32:38:0.079:2	./.
chr17	8215927	rs62637603	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,10:31:15:0.667:2	./.	./.	./.	./.
chr17	8216468	rs871841	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,13:33:29:0.448:2	0/1:9,11:32:20:0.550:2	0/1:0,10:33:10:1.00:2	0/1:0,44:33:44:1.00:2	0/1:46,50:33:96:0.521:2	0/1:24,33:33:57:0.579:2	0/1:0,75:33:75:1.00:2	0/1:38,45:33:83:0.542:2	0/1:23,38:33:61:0.623:2	0/1:15,24:33:39:0.615:2	0/1:0,25:32:25:1.00:2
chr17	8221935	rs35204656	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,78:32:149:0.523:2	./.	0/1:46,46:32:92:0.500:2	./.	./.
chr17	8222870	rs79993581	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,42:32:76:0.553:2	./.	./.
chr17	8224267	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,3:33:57:0.053:2	./.	./.	./.
chr17	8224276	rs3744647	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,13:33:29:0.448:2	0/1:15,11:32:26:0.423:2	./.	0/1:22,29:31:51:0.569:2	0/1:0,43:32:43:1.00:2	0/1:30,15:31:45:0.333:2	0/1:0,50:31:50:1.00:2	0/1:1,47:31:48:0.979:2	0/1:0,32:31:32:1.00:2	0/1:28,16:32:44:0.364:2	0/1:0,30:29:30:1.00:2
chr17	8243459	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,4:30:84:0.048:2	./.	./.	./.	./.	./.	./.	./.
chr17	8243469	rs12943505	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,35:30:90:0.389:2	0/1:44,27:30:71:0.380:2	0/1:41,35:29:76:0.461:2	0/1:2,80:29:82:0.976:2	0/1:2,87:30:89:0.978:2	0/1:37,34:30:71:0.479:2	./.	0/1:1,62:29:63:0.984:2
chr17	8243598	rs73250854	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,19:32:42:0.452:2	./.
chr17	8243661	rs12601097	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,16:31:33:0.485:2	0/1:12,10:32:22:0.455:2	0/1:0,6:30:6:1.00:2	0/1:17,15:32:32:0.469:2	0/1:0,30:31:30:1.00:2	./.	0/1:0,33:31:33:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,26:31:26:1.00:2	0/1:12,11:33:23:0.478:2	0/1:0,46:32:46:1.00:2
chr17	8243785	rs12936935	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,10:33:21:0.476:2	0/1:9,6:33:15:0.400:2	0/1:0,2:30:2:1.00:2	0/1:13,14:34:28:0.519:2	0/1:0,26:31:26:1.00:2	./.	0/1:0,23:33:23:1.00:2	0/1:0,54:33:54:1.00:2	0/1:0,22:34:22:1.00:2	0/1:7,24:33:31:0.774:2	0/1:0,37:33:37:1.00:2
chr17	8249116	rs2302869	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,28:32:54:0.519:2	./.	./.	./.	./.	./.
chr17	8272767	rs2430949	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:16,14:32:30:0.467:2	0/1:9,7:31:16:0.438:2	./.	./.	0/1:15,8:30:23:0.348:2	./.	./.	./.	./.	./.	./.
chr17	8296440	rs12601265	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,4:30:7:0.571:2	0/1:1,2:33:3:0.667:2	./.	0/1:0,6:31:6:1.00:2	0/1:0,4:23:4:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,3:31:3:1.00:2	./.	0/1:2,3:31:5:0.600:2	0/1:0,2:32:2:1.00:2
chr17	8350147	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:32:86:0.047:2	./.	./.	./.	./.	./.
chr17	8404227	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,5:28:88:0.057:2	./.	./.	./.	./.	./.	./.	./.
chr17	8416901	rs11374	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,91:33:91:1.00:2	./.	./.
chr17	8424270	rs8067456	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,62:32:63:0.984:2	0/1:0,43:32:43:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,111:32:111:1.00:2
chr17	8424478	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:172,4:32:176:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr17	8644854	rs2288156	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,43:29:89:0.483:2	./.	./.	./.	./.	./.
chr17	8647931	rs10852904	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:30:17:1.00:2	0/1:0,13:31:13:1.00:2	./.	0/1:18,16:29:34:0.471:2	0/1:22,23:27:45:0.511:2	0/1:16,21:29:37:0.568:2	0/1:0,38:28:38:1.00:2	0/1:31,19:29:50:0.380:2	0/1:12,12:29:24:0.500:2	0/1:14,8:26:22:0.364:2	0/1:15,5:29:20:0.250:2
chr17	8700982	rs2242373	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,9:31:32:0.281:2	./.	0/1:1,22:31:23:0.957:2	0/1:19,15:32:34:0.441:2	./.	./.	./.
chr17	8701116	rs2242374	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,31:32:72:0.431:2	./.	./.
chr17	8701176	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,7:33:34:0.206:2	0/1:11,11:31:22:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	8701423	rs34184531	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:32:10:0.600:2	./.	0/1:72,44:32:116:0.379:2	0/1:36,38:32:74:0.514:2	0/1:0,118:33:118:1.00:2	0/1:49,42:33:91:0.462:2	./.	0/1:30,24:32:54:0.444:2	./.
chr17	8701799	rs17854013	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,17:29:40:0.425:2	0/1:12,7:30:19:0.368:2	./.	./.	./.	./.	./.	./.	0/1:0,27:31:27:1.00:2	./.	./.
chr17	8740139	rs150237469	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,92:32:196:0.469:2	./.	./.
chr17	8792003	rs9915880	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,19:32:49:0.388:2	./.	./.	./.	0/1:18,15:32:33:0.455:2	0/1:18,25:33:43:0.581:2	0/1:0,35:32:35:1.00:2
chr17	8792029	rs381309	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,18:31:47:0.383:2	./.	./.	./.	0/1:19,9:32:28:0.321:2	0/1:25,28:32:53:0.528:2	0/1:0,45:33:45:1.00:2
chr17	8792093	rs16957702	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,7:26:20:0.350:2	./.	./.	./.	./.	0/1:16,11:32:27:0.407:2	0/1:0,26:30:26:1.00:2
chr17	8792171	rs11650737	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,2:34:5:0.400:2	./.	0/1:0,12:32:12:1.00:2
chr17	8792514	rs394811	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,23:29:53:0.434:2	./.	./.	./.	0/1:33,23:29:56:0.411:2	0/1:25,16:29:41:0.390:2	0/1:0,56:28:56:1.00:2
chr17	8809025	rs61753147	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,22:28:37:0.595:2
chr17	9086228	rs2302196	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,40:29:40:1.00:2	./.	0/1:42,13:31:55:0.236:2	./.	./.	./.	./.	./.
chr17	9086293	rs2302197	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,34:27:34:1.00:2	./.	0/1:38,18:27:56:0.321:2	./.	./.	./.	./.	./.
chr17	9086676	rs16957998	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,19:31:21:0.905:2	./.	0/1:46,9:32:55:0.164:2	./.	./.	./.	./.	./.
chr17	9086708	rs62068199	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,14:30:14:1.00:2	./.	0/1:56,16:31:72:0.222:2	./.	./.	./.	./.	./.
chr17	9086712	rs56113014	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:38,32:28:72:0.457:2	0/1:27,11:31:38:0.289:2	./.	./.	./.	./.	./.	0/1:33,41:30:75:0.554:2	0/1:35,49:31:84:0.583:2	./.	0/1:47,41:30:88:0.466:2
chr17	9086743	rs62068200	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,15:28:15:1.00:2	./.	0/1:47,13:30:60:0.217:2	./.	./.	./.	./.	./.
chr17	9124473	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,13:25:29:0.448:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	9124480	rs200209816	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,3:32:17:0.176:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	9143279	rs371521051	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,9:34:20:0.450:2	./.	./.
chr17	9395231	rs9893664	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,31:32:65:0.477:2	0/1:17,10:31:27:0.370:2	0/1:0,6:28:6:1.00:2	0/1:0,59:31:60:1.00:2	0/1:21,22:31:43:0.512:2	0/1:0,45:30:45:1.00:2	0/1:1,31:30:32:0.969:2	0/1:2,53:31:56:0.964:2	0/1:37,35:31:72:0.486:2	0/1:0,46:31:46:1.00:2	0/1:26,34:30:60:0.567:2
chr17	9471711	rs1133295	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,86:29:87:0.989:2	0/1:1,72:29:73:0.986:2	0/1:0,6:29:6:1.00:2	0/1:0,86:30:86:1.00:2	0/1:29,45:29:74:0.608:2	0/1:37,40:30:77:0.519:2	0/1:1,56:30:57:0.982:2	0/1:44,42:29:86:0.488:2	0/1:0,99:30:99:1.00:2	0/1:1,71:30:72:0.986:2	0/1:46,60:29:106:0.566:2
chr17	9479098	rs7224817	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:30:28:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,21:30:21:1.00:2	0/1:18,11:28:29:0.379:2	0/1:10,25:30:35:0.714:2	0/1:0,13:30:13:1.00:2	0/1:16,16:28:32:0.500:2	0/1:0,20:30:20:1.00:2	0/1:0,10:30:10:1.00:2	./.
chr17	9479154	rs118086550	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,6:30:10:0.600:2	./.	./.	./.
chr17	9490076	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,31:33:59:0.525:2	./.	./.
chr17	9515777	rs6503235	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,37:31:38:0.974:2	0/1:0,31:32:31:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,49:31:49:1.00:2	0/1:41,28:31:69:0.406:2	0/1:48,40:31:88:0.455:2	0/1:0,57:33:57:1.00:2	0/1:0,60:32:60:1.00:2	0/1:22,36:31:58:0.621:2
chr17	9586165	rs12453943	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,64:32:64:1.00:2	0/1:32,33:31:65:0.508:2	./.	./.	./.	./.
chr17	9615329	rs75472522	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,8:16:47:0.170:2	./.	./.	./.	./.	./.	./.
chr17	9632247	rs12450515	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,38:33:93:0.409:2	./.	./.	./.	./.	./.	0/1:47,47:32:94:0.500:2	./.
chr17	9676134	rs2280490	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,12:31:28:0.429:2	0/1:22,15:32:37:0.405:2	./.	./.	./.	./.
chr17	9676148	rs2280489	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,19:30:39:0.487:2	0/1:31,18:31:49:0.367:2	./.	./.	./.	./.
chr17	9729413	rs115829319	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,59:31:104:0.567:2	./.	./.	./.
chr17	9729503	rs114271428	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,12:33:20:0.600:2	0/1:4,6:32:10:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	9764531	rs2001486	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:24,23:32:47:0.489:2	0/1:22,9:30:31:0.290:2	./.	0/1:1,45:31:46:0.978:2	./.	./.	./.	0/1:30,23:31:53:0.434:2	./.	0/1:14,19:31:33:0.576:2	0/1:20,25:29:45:0.556:2
chr17	9774057	rs17810279	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:91,71:33:162:0.438:2	0/1:79,59:32:138:0.428:2	./.	0/1:3,196:32:199:0.985:2	./.	./.	./.	0/1:89,111:32:200:0.555:2	./.	0/1:88,71:32:159:0.447:2	0/1:115,83:32:198:0.419:2
chr17	9792768	rs17681684	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:20,17:32:37:0.459:2	0/1:17,15:32:32:0.469:2	./.	0/1:0,63:31:63:1.00:2	./.	./.	./.	0/1:27,38:31:65:0.585:2	./.	0/1:27,14:31:41:0.341:2	0/1:21,22:31:43:0.512:2
chr17	9792775	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:35:69:0.058:2	./.	./.
chr17	9792872	rs17681708	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:14,20:32:34:0.588:2	0/1:8,13:32:21:0.619:2	./.	0/1:0,66:33:66:1.00:2	./.	./.	./.	0/1:40,30:31:70:0.429:2	./.	0/1:19,14:32:33:0.424:2	0/1:25,16:32:41:0.390:2
chr17	9792937	rs148610687	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:32:48:0.085:2	./.	./.	./.	./.	./.
chr17	9820631	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:137,11:32:148:0.074:2	./.	./.	./.	./.	./.	./.	./.
chr17	9821397	rs201170646	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,8:16:46:0.182:2
chr17	9846521	rs17339499	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,25:30:59:0.424:2	0/1:28,14:29:42:0.333:2	./.	0/1:49,21:30:70:0.300:2	0/1:40,36:29:76:0.474:2	./.	./.	./.	./.	./.	./.
chr17	10212964	rs35069886	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,43:31:106:0.406:2
chr17	10213094	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:34:144:0.028:2	./.	./.
chr17	10214486	rs367804029	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,74:32:147:0.503:2	./.	./.	./.	./.	./.
chr17	10216510	rs4791401	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:60,41:32:101:0.406:2	0/1:29,18:31:47:0.383:2	0/1:10,9:31:19:0.474:2	./.	0/1:58,55:31:113:0.487:2	0/1:71,72:30:143:0.503:2	0/1:66,44:32:110:0.400:2	./.	0/1:0,109:32:109:1.00:2	0/1:47,57:32:104:0.548:2	./.
chr17	10219113	rs17690195	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:74,56:32:130:0.431:2	0/1:46,46:32:92:0.500:2	./.	./.	0/1:83,55:31:138:0.399:2	./.	0/1:98,88:31:186:0.473:2	./.	./.	0/1:71,65:32:136:0.478:2	0/1:99,80:32:179:0.447:2
chr17	10222149	rs2074873	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,166:29:169:0.982:2	./.	./.	./.	0/1:104,85:29:189:0.450:2	./.	./.	./.
chr17	10222167	rs12103825	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:31:174:0.023:2	./.	./.	./.	./.	./.
chr17	10222197	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:32:157:0.025:2	./.	./.	./.	./.	./.
chr17	10222334	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:107,4:30:111:0.036:2	0/1:150,6:30:156:0.038:2	./.	./.	./.	./.	./.
chr17	10223697	rs2074876	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,45:32:45:1.00:2	./.	./.	./.	0/1:49,18:32:67:0.269:2	./.	./.	./.
chr17	10223714	rs2074877	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,36:33:36:1.00:2	0/1:0,28:32:28:1.00:2	0/1:3,9:33:12:0.750:2	./.	0/1:2,21:31:23:0.913:2	0/1:24,40:32:65:0.625:2	0/1:0,31:31:31:1.00:2	./.	0/1:0,57:33:57:1.00:2	0/1:0,34:32:34:1.00:2	0/1:31,34:31:65:0.523:2
chr17	10223793	rs35783712	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,11:29:19:0.579:2	./.	./.	./.	./.
chr17	10231283	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,49:32:105:0.467:2
chr17	10236465	rs2240579	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:31:8:1.00:2	0/1:0,8:32:8:1.00:2	./.	./.	0/1:0,15:32:15:1.00:2	./.	0/1:0,17:32:17:1.00:2	0/1:0,8:31:9:1.00:2	0/1:11,20:34:31:0.645:2	0/1:0,13:32:13:1.00:2	0/1:0,11:32:12:1.00:2
chr17	10243717	rs3760423	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:30:17:1.00:2	0/1:0,7:31:7:1.00:2	./.	0/1:10,11:31:22:0.524:2	0/1:0,12:29:12:1.00:2	0/1:10,5:31:15:0.333:2	0/1:0,12:31:12:1.00:2	0/1:0,21:30:21:1.00:2	0/1:12,6:29:18:0.333:2	0/1:0,17:30:17:1.00:2	0/1:0,14:30:14:1.00:2
chr17	10247199	rs12938754	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:2,40:31:42:0.952:2	0/1:0,45:32:45:1.00:2	./.	./.	0/1:27,17:31:44:0.386:2	./.	0/1:22,28:32:50:0.560:2	0/1:37,21:31:58:0.362:2	0/1:47,37:32:84:0.440:2	0/1:21,29:31:50:0.580:2	0/1:28,31:31:59:0.525:2
chr17	10247328	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:33:186:0.022:2
chr17	10247376	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,5:28:145:0.034:2	./.
chr17	10247403	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:31:93:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	10296217	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,5:32:140:0.036:2	./.	./.	./.	./.
chr17	10296241	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:30:129:0.031:2	./.	./.
chr17	10296268	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:32:123:0.033:2
chr17	10296486	rs33969260	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,50:32:108:0.463:2	./.	0/1:126,61:33:187:0.326:2	0/1:62,68:32:130:0.523:2	./.
chr17	10297632	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,4:32:83:0.048:2	./.	./.	./.	./.	./.	./.
chr17	10297658	rs8069834	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:28:68:1.00:2	0/1:1,33:29:34:0.971:2	0/1:0,17:30:17:1.00:2	0/1:0,82:30:82:1.00:2	0/1:35,44:29:79:0.557:2	0/1:34,50:29:84:0.595:2	0/1:0,60:29:60:1.00:2	0/1:39,58:30:97:0.598:2	0/1:0,61:31:61:1.00:2	0/1:1,66:29:67:0.985:2	0/1:35,32:30:67:0.478:2
chr17	10304261	rs3744552	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,37:32:38:0.974:2	0/1:1,22:32:23:0.957:2	0/1:0,2:32:2:1.00:2	0/1:0,32:31:32:1.00:2	0/1:23,19:29:42:0.452:2	0/1:18,15:30:33:0.455:2	0/1:1,17:31:18:0.944:2	0/1:5,12:31:17:0.706:2	0/1:0,52:31:52:1.00:2	0/1:1,20:31:21:0.952:2	0/1:19,30:30:49:0.612:2
chr17	10304500	rs3744553	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,31:30:51:0.608:2
chr17	10304869	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:186,4:33:190:0.021:2	0/1:169,6:33:175:0.034:2	./.	./.	./.	./.	0/1:182,5:32:187:0.027:2	./.	./.	./.	./.
chr17	10304935	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:34:194:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	10307791	rs140061321	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,93:33:187:0.497:2	./.	./.	./.	./.	./.	./.	./.
chr17	10307818	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:33:162:0.025:2
chr17	10307827	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:33:141:0.028:2
chr17	10310246	rs12936716	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,64:32:142:0.454:2
chr17	10312472	rs34693726	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,43:32:80:0.538:2
chr17	10312852	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:128:0.031:2	./.	./.	./.	./.	0/1:120,7:32:127:0.055:2
chr17	10317239	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,5:27:151:0.033:2	./.
chr17	10318636	rs8068729	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:29:81:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,13:29:13:1.00:2	0/1:41,55:29:96:0.573:2	0/1:33,27:29:60:0.450:2	0/1:0,89:30:89:1.00:2	0/1:0,64:30:64:1.00:2	0/1:0,77:29:77:1.00:2	0/1:0,96:31:96:1.00:2	0/1:0,56:29:56:1.00:2	0/1:0,106:29:107:1.00:2
chr17	10346781	rs3744554	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,34:28:97:0.351:2	0/1:81,74:29:155:0.477:2	./.	0/1:72,44:29:116:0.379:2	./.	./.	0/1:78,53:28:131:0.405:2
chr17	10348335	rs141762664	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:31:148:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,5:32:148:0.034:2	./.
chr17	10348354	rs2277649	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,45:31:111:0.405:2	0/1:83,77:32:160:0.481:2	0/1:144,4:32:148:0.027:2	0/1:88,78:32:166:0.470:2	./.	./.	./.
chr17	10352060	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:31:53:0.075:2	./.	./.
chr17	10352083	rs141656211	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,3:33:34:0.088:2	./.	./.	./.	./.	./.	./.
chr17	10355371	rs11651295	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,37:31:78:0.474:2	0/1:53,61:30:114:0.535:2	./.	0/1:52,61:30:113:0.540:2	./.	./.	0/1:38,39:29:77:0.506:2
chr17	10355763	rs917361	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,43:32:90:0.478:2	0/1:73,53:32:126:0.421:2	0/1:122,5:33:127:0.039:2	0/1:59,63:32:122:0.516:2	./.	./.	0/1:68,70:33:138:0.507:2
chr17	10357098	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,6:32:195:0.031:2	./.	./.	./.	./.
chr17	10357116	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,6:30:183:0.033:2	./.	./.	./.	./.
chr17	10360854	rs12949680	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,59:30:115:0.513:2
chr17	10360891	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	10361023	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,4:32:108:0.037:2	./.	./.	./.	./.	./.	./.	./.
chr17	10362736	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,4:30:58:0.069:2	./.	./.	./.	./.	./.	./.	./.
chr17	10363410	rs3744561	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,47:30:100:0.470:2	0/1:72,49:30:121:0.405:2	./.	0/1:50,52:30:102:0.510:2	./.	./.	0/1:75,72:29:147:0.490:2
chr17	10366204	rs35984286	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,48:30:99:0.485:2	./.	./.	0/1:42,44:31:86:0.512:2	./.
chr17	10367828	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:33:140:0.029:2	./.	./.	./.
chr17	10367870	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.	./.	./.
chr17	10367891	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:30:107:0.037:2	./.	./.	./.
chr17	10369877	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,8:30:135:0.059:2	./.	./.	./.
chr17	10369911	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:32:154:0.026:2	./.	./.	./.
chr17	10398599	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:31:102:0.039:2	./.	./.	./.	./.
chr17	10399279	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:30:97:0.041:2	./.	./.	./.
chr17	10399327	rs149731873	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:111,5:30:116:0.043:2	./.	0/1:115,4:31:119:0.034:2	0/1:128,8:31:136:0.059:2	./.	0/1:88,5:32:93:0.054:2	./.
chr17	10403994	rs117616137	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:128,4:32:132:0.030:2	./.	./.	./.	./.	./.	./.
chr17	10404046	rs17811250	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,63:32:127:0.496:2	./.	./.
chr17	10404682	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:33:99:0.040:2	./.	./.	./.	./.	./.
chr17	10406205	rs138112513	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:131,4:33:136:0.030:2	./.	./.	./.	./.	./.	0/1:186,4:33:190:0.021:2
chr17	10408208	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:32:118:0.034:2	./.	./.	./.	./.	./.
chr17	10408714	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,7:33:109:0.064:2	./.	0/1:191,5:33:196:0.026:2	./.	./.
chr17	10409164	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:32:161:0.025:2	./.	./.	./.	./.	./.
chr17	10409176	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:34:195:0.021:2	./.	./.
chr17	10409241	rs73974725	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,81:29:187:0.433:2	./.	./.	0/1:93,85:29:179:0.478:2
chr17	10411253	rs150346984	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,59:33:129:0.457:2	0/1:40,40:33:80:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	10411885	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,3:33:44:0.068:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,6:31:86:0.070:2
chr17	10411939	rs200402746	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:42,4:32:46:0.087:2	./.	./.	./.	0/1:62,6:32:68:0.088:2	./.	./.	./.	./.	0/1:74,4:31:78:0.051:2
chr17	10415840	rs2007027	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:33:73:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,64:33:64:1.00:2	0/1:21,35:32:56:0.625:2	0/1:0,66:32:66:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,68:33:68:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,83:33:83:1.00:2
chr17	10417429	rs113019239	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:32:97:0.041:2	./.	./.	./.	./.
chr17	10419629	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,7:31:115:0.061:2	./.	./.	./.	./.	./.	./.
chr17	10419642	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,8:28:106:0.075:2	./.	./.	./.	./.	./.	./.
chr17	10419651	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,7:32:105:0.067:2	./.	./.	./.	./.	./.	./.
chr17	10419774	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:151,6:31:157:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:33:169:0.024:2	0/1:185,5:30:190:0.026:2
chr17	10426468	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:31:129:0.031:2
chr17	10427924	rs1042236	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,43:31:112:0.384:2	./.	0/1:61,30:31:91:0.330:2	0/1:63,52:31:115:0.452:2	./.	0/1:52,33:30:85:0.388:2	./.
chr17	10428206	rs1042185	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:177,4:33:181:0.022:2	./.	./.	./.	0/1:189,5:33:195:0.026:2	./.	./.	./.	./.	./.
chr17	10428227	rs201177363	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:175,4:32:179:0.022:2	./.	./.	0/1:188,4:32:193:0.021:2	0/1:189,6:29:195:0.031:2	./.	./.	./.	./.	./.
chr17	10428271	rs138393827	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:185,4:32:190:0.021:2	./.	./.	./.	./.	./.	./.
chr17	10432234	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,6:30:166:0.036:2	./.	./.	./.
chr17	10432273	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,5:31:122:0.041:2	./.	./.	./.
chr17	10436835	rs79757188	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,6:29:186:0.032:2	./.	0/1:165,6:30:171:0.035:2	./.	./.	0/1:191,4:32:195:0.021:2
chr17	10440815	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,4:33:90:0.044:2	./.	0/1:95,4:32:99:0.040:2	./.	./.	./.	./.	./.
chr17	10441072	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,4:31:86:0.047:2	./.	./.	./.	./.	./.	./.
chr17	10441078	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,4:32:81:0.049:2	./.	./.	./.	./.	./.	./.
chr17	10441114	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,4:31:46:0.087:2	./.	./.	./.	./.	./.	./.
chr17	10442528	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:35:76:0.053:2	./.	./.	./.	./.
chr17	10442537	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,4:33:91:0.044:2	./.	./.	0/1:80,4:33:84:0.048:2	0/1:98,5:33:104:0.049:2	./.	./.	./.
chr17	10448712	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:133,4:31:137:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr17	10448769	rs11078850	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,21:30:40:0.525:2	0/1:33,34:31:67:0.507:2	0/1:18,24:31:42:0.571:2	0/1:28,40:32:68:0.588:2	./.	0/1:27,30:31:57:0.526:2	0/1:38,38:31:76:0.500:2
chr17	10450816	rs12600539	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,80:32:185:0.432:2	0/1:83,103:33:186:0.554:2	0/1:93,96:33:189:0.508:2	0/1:93,101:33:194:0.521:2	./.	0/1:113,79:33:192:0.411:2	0/1:88,95:33:183:0.519:2
chr17	10534960	rs34393601	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,82:31:190:0.432:2	./.	./.	./.	./.
chr17	10536018	rs2285479	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,130:31:132:0.985:2	0/1:0,74:32:74:1.00:2	0/1:0,14:32:14:1.00:2	0/1:99,77:31:176:0.438:2	0/1:61,50:31:111:0.450:2	0/1:60,79:31:139:0.568:2	0/1:84,54:32:138:0.391:2	0/1:1,145:32:146:0.993:2	0/1:88,54:32:143:0.380:2	0/1:3,103:31:106:0.972:2	0/1:76,60:31:136:0.441:2
chr17	10541515	rs2285477	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:31:93:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,5:31:5:1.00:2	0/1:50,66:31:116:0.569:2	0/1:0,88:31:88:1.00:2	0/1:62,74:31:137:0.544:2	0/1:1,142:31:143:0.993:2	0/1:0,132:31:132:1.00:2	0/1:46,58:31:104:0.558:2	0/1:0,113:31:113:1.00:2	0/1:52,45:31:97:0.464:2
chr17	10542471	rs2285475	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:30:72:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,8:27:8:1.00:2	0/1:27,41:31:69:0.603:2	0/1:24,30:31:54:0.556:2	0/1:48,41:30:89:0.461:2	0/1:38,44:31:82:0.537:2	0/1:0,70:30:70:1.00:2	0/1:41,51:31:92:0.554:2	0/1:0,81:30:81:1.00:2	0/1:58,54:30:112:0.482:2
chr17	10542645	rs139544273	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,34:30:92:0.370:2	0/1:49,28:29:77:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	10542709	rs34088014	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,32:31:64:0.508:2	./.	./.	./.	./.
chr17	10542765	rs2285474	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,91:30:91:1.00:2	0/1:0,35:29:35:1.00:2	0/1:0,6:31:6:1.00:2	0/1:43,36:30:79:0.456:2	0/1:37,19:30:56:0.339:2	0/1:34,41:29:75:0.547:2	0/1:30,24:30:54:0.444:2	0/1:0,52:29:52:1.00:2	0/1:53,33:32:86:0.384:2	0/1:0,54:29:54:1.00:2	0/1:76,58:30:134:0.433:2
chr17	10542886	rs2285472	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,139:31:139:1.00:2	0/1:0,69:31:69:1.00:2	0/1:1,19:31:20:0.950:2	0/1:72,59:32:131:0.450:2	0/1:38,28:31:66:0.424:2	0/1:76,79:30:155:0.510:2	0/1:41,55:30:96:0.573:2	0/1:1,109:31:110:0.991:2	0/1:72,72:32:144:0.500:2	0/1:0,113:31:113:1.00:2	0/1:80,74:31:154:0.481:2
chr17	10543385	rs56163389	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,76:33:149:0.510:2	./.	./.	./.	./.	./.	./.
chr17	10543463	rs2285469	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,162:29:163:0.994:2	0/1:0,158:28:158:1.00:2	0/1:0,32:30:32:1.00:2	0/1:110,77:28:187:0.412:2	0/1:96,74:29:170:0.435:2	0/1:92,63:29:155:0.406:2	0/1:81,65:29:147:0.445:2	0/1:4,133:29:137:0.971:2	0/1:110,73:30:183:0.399:2	0/1:0,174:29:174:1.00:2	0/1:99,88:29:188:0.471:2
chr17	10544416	rs876657	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,89:33:90:0.989:2	0/1:0,57:32:57:1.00:2	0/1:0,12:32:12:1.00:2	0/1:72,39:32:111:0.351:2	0/1:38,33:32:72:0.465:2	0/1:72,43:32:115:0.374:2	0/1:69,28:33:97:0.289:2	0/1:0,64:32:64:1.00:2	0/1:77,43:33:120:0.358:2	0/1:1,52:32:53:0.981:2	0/1:79,45:32:124:0.363:2
chr17	10544461	rs56259391	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,26:29:45:0.578:2	./.	./.	./.	./.	./.	./.
chr17	10545565	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:164,4:32:168:0.024:2	./.	./.	./.	./.	./.	./.
chr17	10545863	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,5:30:107:0.047:2	./.	./.	./.	./.	./.	./.	./.
chr17	10558376	rs17817203	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,52:32:120:0.433:2	./.	./.	./.	./.
chr17	10584474	rs139771078	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,77:33:187:0.412:2	0/1:89,50:32:139:0.360:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	10595250	rs2271228	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,24:31:78:0.308:2	./.	./.	./.	./.	./.	./.	./.
chr17	10600693	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,4:33:28:0.143:2
chr17	10608669	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,4:31:67:0.060:2	./.	./.	./.	./.	./.	./.
chr17	10614442	rs406446	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,17:32:36:0.472:2	0/1:15,12:32:27:0.444:2	0/1:0,2:31:2:1.00:2	0/1:20,12:33:32:0.375:2	./.	0/1:2,33:32:35:0.943:2	0/1:8,8:32:16:0.500:2	0/1:2,26:33:28:0.929:2	0/1:10,16:32:26:0.615:2	0/1:12,10:32:22:0.455:2	0/1:26,16:33:42:0.381:2
chr17	10618883	rs140118197	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,6:32:69:0.087:2	./.	./.	./.	./.
chr17	11166782	rs62000368	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,45:30:90:0.500:2
chr17	11511457	rs11078022	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,36:32:36:1.00:2	0/1:0,31:32:31:1.00:2	./.	0/1:12,15:32:27:0.556:2	./.	0/1:19,35:32:54:0.648:2	0/1:14,21:33:35:0.600:2	./.	./.	0/1:21,9:33:30:0.300:2	./.
chr17	11511583	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,4:33:31:0.129:2	./.	./.	./.	./.
chr17	11523082	rs9892256	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,125:30:126:0.992:2	0/1:0,86:31:86:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,156:30:156:1.00:2	0/1:0,145:30:145:1.00:2	0/1:0,151:29:151:1.00:2	0/1:0,163:30:163:1.00:2	0/1:1,160:30:161:0.994:2	0/1:1,145:31:146:0.993:2	0/1:0,140:30:141:1.00:2	0/1:0,155:30:155:1.00:2
chr17	11532835	rs9895535	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,59:32:59:1.00:2	0/1:28,29:32:57:0.509:2	./.	0/1:39,39:33:78:0.500:2	0/1:3,70:32:74:0.959:2	./.	0/1:15,20:33:35:0.571:2	./.
chr17	11543588	rs17600516	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,15:30:45:0.341:2	./.	./.	./.	./.	./.	./.
chr17	11543596	rs141077864	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,32:33:47:0.681:2	./.
chr17	11550421	rs146479561	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,13:33:22:0.591:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	11556248	rs16945138	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,24:31:54:0.444:2	./.	./.	./.	./.	./.	./.	./.
chr17	11572727	rs61745415	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,45:32:122:0.369:2	./.	./.	./.	./.	./.	./.	./.
chr17	11583089	rs8071438	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:30:40:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,40:31:40:1.00:2	0/1:27,20:31:47:0.426:2	0/1:0,44:31:44:1.00:2
chr17	11584075	rs377379805	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:33:47:0.085:2	./.
chr17	11593457	rs61742881	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,24:31:44:0.545:2	./.	./.	./.	./.	./.	./.	./.
chr17	11593624	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:29:79:0.052:2	./.
chr17	11597719	rs61747389	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,54:30:115:0.470:2	./.	./.	./.	./.	./.	./.	./.
chr17	11642231	rs61739481	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,51:32:84:0.607:2	./.
chr17	11648332	rs3744578	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,27:32:60:0.450:2	0/1:30,32:32:62:0.516:2	0/1:0,9:31:9:1.00:2	0/1:48,31:31:79:0.392:2	0/1:2,44:31:46:0.957:2	0/1:44,25:31:69:0.362:2	0/1:0,72:30:72:1.00:2	0/1:55,36:30:91:0.396:2	0/1:31,35:32:66:0.530:2	0/1:1,58:31:59:0.983:2	0/1:0,88:31:88:1.00:2
chr17	11648402	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,4:30:69:0.058:2	./.	./.	./.	./.	./.	./.	./.
chr17	11650958	rs61743635	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:34:8:0.500:2	./.	./.	./.	./.	./.	0/1:46,47:34:93:0.505:2	./.	./.
chr17	11651057	rs3744581	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,23:31:44:0.523:2	./.	0/1:34,22:31:56:0.393:2	./.	0/1:24,18:31:42:0.429:2	./.	0/1:25,23:31:48:0.479:2	./.
chr17	11666911	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,25:33:89:0.281:2	0/1:16,28:32:44:0.636:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	11671913	rs2277658	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,17:33:57:0.298:2	./.	./.	./.	./.	./.	./.	./.
chr17	11672607	rs61744697	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:32:7:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	11757556	rs12449553	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,29:30:59:0.492:2	0/1:16,11:29:27:0.407:2	0/1:4,4:29:8:0.500:2	0/1:38,28:30:66:0.424:2	0/1:25,18:30:43:0.419:2	./.	0/1:0,69:30:69:1.00:2	0/1:51,29:29:80:0.363:2	0/1:3,64:31:67:0.955:2	0/1:0,63:30:64:1.00:2	0/1:52,23:29:75:0.307:2
chr17	11784688	rs117577626	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,24:32:54:0.444:2	./.	./.	./.
chr17	11786951	rs8070256	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,33:31:64:0.516:2	0/1:13,16:33:29:0.552:2	0/1:0,9:33:9:1.00:2	0/1:48,27:33:75:0.360:2	0/1:31,19:33:50:0.380:2	0/1:48,17:33:65:0.262:2	0/1:34,23:33:57:0.404:2	0/1:64,41:32:105:0.390:2	0/1:42,24:34:66:0.364:2	0/1:0,49:33:49:1.00:2	0/1:50,33:32:83:0.398:2
chr17	11833287	rs2286303	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,25:29:67:0.373:2	./.	./.	./.	./.	0/1:1,30:28:31:0.968:2	./.
chr17	11833365	rs1859887	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,3:33:14:0.214:2	./.	0/1:41,50:32:91:0.549:2	./.	./.	./.	./.	0/1:1,70:33:71:0.986:2	./.
chr17	11835331	rs17612861	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,9:31:28:0.321:2	./.	0/1:123,71:31:194:0.366:2	./.	./.	./.	./.	0/1:0,191:31:191:1.00:2	./.
chr17	11865462	rs1990236	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,22:33:38:0.579:2	0/1:16,12:32:28:0.429:2	./.	./.	./.	0/1:30,32:31:62:0.516:2	./.	./.	./.	./.	0/1:34,22:30:56:0.393:2
chr17	11872747	rs200749236	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,31:30:76:0.408:2	./.	./.	./.
chr17	12032565	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,6:32:190:0.032:2
chr17	12032566	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,6:29:189:0.032:2
chr17	12032578	rs373999106	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,6:32:183:0.033:2
chr17	12032589	rs191244765	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,52:32:130:0.400:2	./.	./.	./.
chr17	12618841	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:33:133:0.030:2	./.	./.	./.	./.
chr17	12647729	rs76490220	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,22:32:54:0.407:2	0/1:17,16:33:33:0.485:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	12656111	rs12453883	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,51:30:51:1.00:2	0/1:0,34:29:34:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	12656417	rs28730824	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,21:30:40:0.525:2	./.	0/1:1,37:31:38:0.974:2	./.	./.	./.
chr17	12798323	rs182594602	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,15:29:44:0.341:2	./.	./.	./.
chr17	12819325	rs371444790	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,30:33:56:0.536:2	0/1:25,17:32:42:0.405:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	12862170	rs3213687	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,14:32:19:0.737:2	./.	./.	./.
chr17	12888086	rs143756943	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,38:31:73:0.521:2	./.	./.
chr17	12898295	rs17552022	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,65:29:124:0.524:2	./.	./.	0/1:86,79:30:166:0.479:2	./.	./.
chr17	12899902	rs5030739	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,19:30:45:0.422:2	./.	./.	./.	./.	./.	0/1:9,11:30:20:0.550:2
chr17	12899963	rs11545302	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,34:30:34:1.00:2	0/1:0,14:29:14:1.00:2	./.	0/1:10,17:29:27:0.630:2	0/1:28,15:28:43:0.349:2	0/1:10,9:29:19:0.474:2	./.	./.	0/1:25,12:30:37:0.324:2	./.	0/1:13,14:29:27:0.519:2
chr17	12915009	rs4792311	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,142:31:144:0.986:2	0/1:0,99:31:99:1.00:2	0/1:12,8:31:20:0.400:2	0/1:92,76:31:168:0.452:2	0/1:75,73:31:148:0.493:2	0/1:93,88:31:181:0.486:2	./.	./.	0/1:92,90:32:182:0.495:2	./.	0/1:89,96:31:185:0.519:2
chr17	12916606	rs74556312	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,32:31:64:0.500:2	./.	./.	0/1:45,29:31:74:0.392:2	./.	./.
chr17	12920260	rs58809197	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,56:33:59:0.949:2	0/1:1,20:32:21:0.952:2	./.	0/1:27,32:33:59:0.542:2	0/1:30,29:33:59:0.492:2	0/1:34,24:32:59:0.414:2	./.	./.	0/1:41,33:34:74:0.446:2	./.	0/1:44,38:32:82:0.463:2
chr17	13399616	rs62057033	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:36,10:31:46:0.217:2	0/1:130,49:32:179:0.274:2	0/1:132,53:33:185:0.286:2	./.	0/1:112,54:32:166:0.325:2	./.	./.	./.	0/1:121,54:33:175:0.309:2
chr17	13446924	rs9913045	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,5:31:14:0.357:2	./.	./.	./.	./.	./.	0/1:7,8:29:15:0.533:2	./.
chr17	13503934	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.
chr17	13504294	rs201141071	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,15:27:35:0.429:2	./.	./.	./.	./.	./.	./.
chr17	13504295	rs200614314	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,15:29:35:0.429:2	./.	./.	./.	./.	./.	./.
chr17	13972955	rs8076787	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:17,21:31:38:0.553:2	0/1:19,8:29:27:0.296:2	./.	0/1:50,37:30:87:0.425:2	./.	./.	./.	./.	0/1:64,39:30:103:0.379:2	./.	./.
chr17	13980058	rs2230351	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:16,16:33:32:0.500:2	0/1:14,10:30:24:0.417:2	./.	0/1:21,17:32:38:0.447:2	./.	./.	./.	./.	0/1:18,18:31:36:0.500:2	./.	./.
chr17	13980350	rs2072279	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,24:32:42:0.571:2	0/1:10,18:32:28:0.643:2	0/1:0,3:31:3:1.00:2	0/1:31,23:32:54:0.426:2	0/1:27,18:31:45:0.400:2	0/1:0,39:30:39:1.00:2	0/1:22,16:33:38:0.421:2	0/1:23,26:32:49:0.531:2	0/1:35,27:33:62:0.435:2	0/1:0,48:32:48:1.00:2	./.
chr17	14005439	rs2159132	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,62:31:62:1.00:2	0/1:0,32:32:32:1.00:2	./.	0/1:57,28:30:85:0.329:2	./.	0/1:0,84:31:84:1.00:2	0/1:64,35:31:99:0.354:2	0/1:3,83:31:86:0.965:2	0/1:0,83:31:83:1.00:2	0/1:1,60:30:62:0.984:2	./.
chr17	14095309	rs2230354	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,44:28:44:1.00:2	0/1:0,18:28:18:1.00:2	./.	0/1:1,49:29:50:0.980:2	./.	0/1:0,57:30:57:1.00:2	0/1:0,47:29:47:1.00:2	0/1:1,68:29:69:0.986:2	0/1:0,53:30:53:1.00:2	0/1:28,23:29:51:0.451:2	./.
chr17	14139191	rs148329066	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,11:30:25:0.440:2	./.	./.	./.	0/1:78,25:31:104:0.243:2	0/1:112,40:32:152:0.263:2	0/1:83,32:34:115:0.278:2	./.	./.
chr17	14139702	rs138924466	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,6:30:12:0.500:2	0/1:74,15:31:89:0.169:2	./.	0/1:55,23:29:78:0.295:2	./.	./.	./.	./.	./.
chr17	14139891	rs62052131	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,95:31:95:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,7:30:7:1.00:2	./.	0/1:1,115:30:116:0.991:2	0/1:0,134:30:134:1.00:2	0/1:0,115:30:115:1.00:2	0/1:1,143:30:144:0.993:2	0/1:0,113:31:113:1.00:2	0/1:0,91:30:91:1.00:2	0/1:0,131:30:131:1.00:2
chr17	14139907	rs201488262	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:123,5:31:128:0.039:2	0/1:97,6:33:103:0.058:2	./.	0/1:155,10:32:165:0.061:2	./.	./.	./.	./.	0/1:142,5:35:147:0.034:2	./.	./.
chr17	14140080	rs17679866	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,168:31:174:0.966:2	0/1:111,82:31:193:0.425:2	./.	./.	./.	0/1:72,83:31:155:0.535:2	./.
chr17	14140081	rs11651890	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,23:33:175:0.131:2	0/1:99,14:32:113:0.124:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,34:32:189:0.180:2
chr17	14140103	rs4792453	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,181:30:181:1.00:2	0/1:0,107:29:107:1.00:2	0/1:0,24:29:24:1.00:2	0/1:3,168:30:171:0.982:2	0/1:3,168:29:171:0.982:2	0/1:2,173:29:175:0.989:2	0/1:7,180:29:187:0.963:2	0/1:2,182:29:184:0.989:2	0/1:3,179:30:182:0.984:2	0/1:2,151:29:153:0.987:2	0/1:0,177:29:177:1.00:2
chr17	14140142	rs200254739	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,5:32:152:0.033:2	./.	./.	./.	./.
chr17	14248423	rs9906855	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,40:28:46:0.870:2	0/1:1,25:27:26:0.962:2	./.	0/1:1,61:27:62:0.984:2	0/1:82,29:25:111:0.261:2	0/1:86,27:28:113:0.239:2	0/1:1,39:26:40:0.975:2	0/1:4,46:26:50:0.920:2	./.	0/1:1,45:27:46:0.978:2	0/1:0,50:26:50:1.00:2
chr17	14248864	rs200359911	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:35,7:32:42:0.167:2	0/1:159,34:32:193:0.176:2	0/1:158,41:31:199:0.206:2	./.	0/1:160,36:32:196:0.184:2	./.	./.	./.	0/1:128,29:33:157:0.185:2
chr17	15207364	rs13961	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,180:33:180:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,23:32:23:1.00:2	0/1:1,164:33:165:0.994:2	0/1:1,174:33:175:0.994:2	0/1:2,183:33:185:0.989:2	0/1:0,163:33:163:1.00:2	0/1:120,67:33:187:0.358:2	0/1:0,165:33:165:1.00:2	0/1:94,90:32:184:0.489:2	0/1:101,69:31:170:0.406:2
chr17	15215660	rs2286516	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:86,53:32:139:0.381:2	0/1:31,38:33:69:0.551:2	0/1:10,6:33:16:0.375:2	0/1:62,77:32:139:0.554:2	./.	0/1:71,73:32:144:0.507:2	./.	./.	./.	./.	./.
chr17	15215790	rs6502446	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,21:32:60:0.350:2	./.	./.
chr17	15217437	rs230898	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:26,20:32:46:0.435:2	0/1:102,91:33:193:0.472:2	0/1:2,180:32:182:0.989:2	0/1:92,91:32:183:0.497:2	0/1:100,95:32:195:0.487:2	0/1:93,95:32:188:0.505:2	0/1:99,84:32:184:0.459:2	0/1:94,93:32:187:0.497:2	0/1:90,94:31:184:0.511:2
chr17	15234356	rs201038012	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,40:32:90:0.444:2	0/1:23,25:31:48:0.521:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	15234895	rs7226363	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,26:32:53:0.500:2	./.	0/1:18,12:33:30:0.400:2	0/1:14,16:33:30:0.533:2
chr17	15341183	rs2954759	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,61:32:156:0.391:2	./.	0/1:84,69:33:153:0.451:2	./.	0/1:74,97:32:171:0.567:2	0/1:71,56:34:129:0.441:2	./.	./.
chr17	15443734	rs200768112	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,6:28:17:0.353:2	./.	./.	0/1:129,36:28:165:0.218:2	0/1:172,22:26:194:0.113:2	./.	./.	./.	0/1:148,52:28:200:0.260:2
chr17	15443742	rs138309602	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,7:32:20:0.350:2	./.	./.	0/1:140,44:32:184:0.239:2	0/1:168,24:32:192:0.125:2	./.	./.	./.	0/1:140,53:33:194:0.275:2
chr17	15449135	rs113562922	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:33:138:0.029:2	./.
chr17	15449158	rs56222179	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:33:156:0.026:2	0/1:179,7:32:186:0.038:2	0/1:127,5:30:132:0.038:2	0/1:173,5:28:179:0.028:2
chr17	15457041	.	A	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:190,5:28:196:0.026:2	./.	./.	0/1:194,5:32:199:0.025:2	0/1:192,7:31:199:0.035:2	0/1:190,6:31:196:0.031:2	./.	./.	0/1:191,9:29:200:0.045:2	0/1:194,4:33:198:0.020:2	./.
chr17	15457087	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:173,6:30:179:0.034:2	0/1:174,5:31:179:0.028:2	./.	0/1:165,6:29:171:0.035:2	./.	0/1:171,7:28:178:0.039:2	0/1:176,9:31:185:0.049:2	0/1:173,9:30:182:0.049:2	0/1:171,4:31:175:0.023:2	0/1:168,7:28:175:0.040:2	0/1:163,9:31:172:0.052:2
chr17	15492409	rs151442	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,91:29:91:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,185:29:185:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,164:30:164:1.00:2	0/1:1,118:29:119:0.992:2	0/1:0,178:29:178:1.00:2	0/1:0,83:30:83:1.00:2	0/1:0,71:30:71:1.00:2	0/1:0,39:31:39:1.00:2
chr17	15492410	rs76213106	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,12:31:29:0.414:2	./.	0/1:111,12:31:123:0.098:2	0/1:179,12:29:192:0.063:2	./.	./.	0/1:25,18:31:43:0.419:2
chr17	15492426	rs28445278	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,53:30:115:0.461:2	0/1:17,38:31:55:0.691:2	0/1:5,8:27:13:0.615:2	0/1:178,17:30:195:0.087:2	0/1:2,45:30:47:0.957:2	0/1:140,56:30:196:0.286:2	0/1:97,51:31:149:0.345:2	0/1:176,15:31:191:0.079:2	0/1:54,62:31:116:0.534:2	0/1:63,51:31:115:0.447:2	0/1:1,61:31:62:0.984:2
chr17	15492499	rs2654325	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:143,8:30:151:0.053:2	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2	0/1:188,5:33:193:0.026:2	./.	./.	./.	./.
chr17	15496725	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:31:141:0.028:2	./.	./.	./.	./.
chr17	15496727	rs79385100	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,45:33:119:0.378:2	./.	./.	./.	0/1:76,59:33:135:0.437:2	./.	./.	./.
chr17	15496730	rs8078150	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,48:33:110:0.436:2	./.	./.	./.	0/1:78,59:32:137:0.431:2	./.	./.	0/1:66,56:33:122:0.459:2
chr17	15496777	rs146110909	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,49:32:96:0.510:2	./.	./.	./.	./.	./.
chr17	15498181	rs12601532	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,70:31:155:0.452:2	./.	./.	./.	0/1:82,82:30:164:0.500:2	./.	./.	0/1:61,40:29:102:0.396:2
chr17	15510888	rs62070401	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,65:31:146:0.445:2	./.	./.	./.	0/1:93,81:32:175:0.466:2	./.	./.	./.
chr17	15510988	rs62070402	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,47:30:117:0.402:2	./.	./.	./.	0/1:69,42:28:111:0.378:2	./.	./.	./.
chr17	15517106	rs201627270	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,16:31:190:0.084:2	./.	./.	./.	./.
chr17	15517194	rs199900111	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,31:32:174:0.178:2	./.	./.	./.	./.
chr17	15517237	rs62070406	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,16:27:133:0.121:2	./.	0/1:113,14:28:127:0.110:2	./.	./.	./.	0/1:99,18:28:117:0.154:2	./.
chr17	15517284	rs200934978	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,7:33:85:0.082:2	./.	0/1:106,6:34:113:0.054:2	./.	./.	./.	0/1:87,8:32:95:0.084:2	./.
chr17	15522733	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:169,22:33:191:0.115:2	0/1:152,14:32:166:0.084:2	0/1:31,3:33:34:0.088:2	0/1:180,11:32:192:0.058:2	0/1:193,5:32:198:0.025:2	0/1:180,16:31:196:0.082:2	0/1:176,20:33:196:0.102:2	0/1:178,20:32:198:0.101:2	0/1:185,11:34:196:0.056:2	0/1:187,10:33:197:0.051:2	0/1:166,13:32:179:0.073:2
chr17	15522759	rs201445711	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:151,35:31:187:0.188:2	0/1:165,29:31:195:0.149:2	./.	0/1:169,23:29:192:0.120:2	0/1:179,15:28:194:0.077:2	0/1:170,28:29:198:0.141:2	0/1:179,19:29:198:0.096:2	0/1:161,37:30:198:0.187:2	0/1:186,8:32:194:0.041:2	0/1:159,35:31:194:0.180:2	0/1:165,26:29:191:0.136:2
chr17	15531942	rs62070417	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,12:29:42:0.286:2	0/1:32,9:29:41:0.220:2	./.	0/1:31,8:31:39:0.205:2	./.	./.	0/1:27,27:29:54:0.500:2	./.
chr17	15532104	rs146156927	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,38:32:90:0.422:2
chr17	15532147	rs3174720	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,38:33:92:0.413:2
chr17	15532254	rs187299414	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:32:152:0.026:2	./.	./.
chr17	15539426	rs200176122	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	0/1:155,4:34:159:0.025:2	./.	./.
chr17	15554504	rs4792642	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:118,75:32:193:0.389:2	0/1:92,65:32:157:0.414:2	0/1:103,86:32:189:0.455:2	./.	./.	0/1:62,70:32:132:0.530:2	0/1:71,52:32:123:0.423:2
chr17	15584256	rs181088462	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:111,50:30:161:0.311:2	0/1:58,25:31:83:0.301:2	./.	./.	./.	./.	0/1:66,15:30:81:0.185:2	./.	./.	./.	./.
chr17	15604485	rs78494624	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:130,60:32:190:0.316:2	./.	./.	./.	./.	0/1:117,51:33:168:0.304:2	./.
chr17	15611495	rs3760299	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,11:32:25:0.440:2	0/1:16,7:33:23:0.304:2	0/1:3,6:32:9:0.667:2	./.	./.	./.	0/1:29,17:33:46:0.370:2
chr17	15619811	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,4:34:89:0.045:2	./.	./.	./.	./.	./.	./.	./.
chr17	15619817	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,4:32:88:0.045:2	./.	./.	./.	./.	./.	./.	./.
chr17	15620481	rs2530064	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,24:29:24:1.00:2	./.	0/1:2,37:30:39:0.949:2	0/1:56,11:31:67:0.164:2	0/1:76,14:30:90:0.156:2	./.	./.	0/1:74,16:32:90:0.178:2	0/1:73,11:29:84:0.131:2	./.
chr17	15638936	rs202051234	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,70:32:194:0.361:2	0/1:159,35:32:194:0.180:2	./.	0/1:148,44:33:192:0.229:2	./.	./.
chr17	15640806	rs200208182	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:159,16:33:175:0.091:2	0/1:58,41:32:99:0.414:2	0/1:157,31:31:188:0.165:2	0/1:36,23:32:59:0.390:2	./.	0/1:49,22:34:72:0.310:2	0/1:130,14:30:144:0.097:2	./.
chr17	15640815	rs201215351	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:27:39:1.00:2	0/1:3,15:28:18:0.833:2	0/1:0,7:28:7:1.00:2	0/1:143,46:27:189:0.243:2	0/1:1,134:27:135:0.993:2	0/1:143,45:27:189:0.239:2	0/1:1,82:27:83:0.988:2	./.	0/1:0,74:28:74:1.00:2	0/1:115,31:26:146:0.212:2	0/1:0,38:27:39:1.00:2
chr17	15641610	rs202131240	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,5:32:105:0.048:2	./.	0/1:98,7:30:105:0.067:2	./.	./.	./.	./.
chr17	15644506	rs11650318	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:30:6:1.00:2	0/1:33,38:31:71:0.535:2	0/1:38,29:31:67:0.433:2	0/1:34,26:31:60:0.433:2	0/1:35,22:31:57:0.386:2	./.	0/1:29,51:32:81:0.638:2	./.	0/1:28,22:31:50:0.440:2
chr17	15645289	rs17855672	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:29:3:1.00:2	0/1:30,25:32:55:0.455:2	0/1:20,25:31:45:0.556:2	0/1:34,17:32:51:0.333:2	0/1:21,24:31:45:0.533:2	./.	0/1:19,27:30:46:0.587:2	./.	0/1:21,29:31:50:0.580:2
chr17	15907547	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:33:142:0.028:2	./.	./.
chr17	15995270	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:31:138:0.029:2	./.	./.	./.	./.	./.
chr17	16068346	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:32:143:0.028:2	./.	./.	./.	./.
chr17	16068364	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:32:152:0.026:2	./.	./.	./.	./.	./.
chr17	16068377	rs200020868	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:120,5:27:125:0.040:2	0/1:133,5:32:138:0.036:2	./.	0/1:114,8:26:122:0.066:2	0/1:114,8:26:122:0.066:2	0/1:138,8:28:146:0.055:2	./.	0/1:139,8:27:147:0.054:2	./.	0/1:106,6:27:112:0.054:2	./.
chr17	16068383	rs199892481	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:114,14:33:128:0.109:2	0/1:122,9:33:131:0.069:2	./.	0/1:97,21:31:118:0.178:2	0/1:101,16:31:117:0.137:2	0/1:131,18:31:149:0.121:2	0/1:110,11:33:121:0.091:2	0/1:136,17:31:153:0.111:2	0/1:146,8:33:154:0.052:2	0/1:107,17:32:124:0.137:2	0/1:111,25:33:136:0.184:2
chr17	16068396	rs150910818	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:114,20:31:134:0.149:2	0/1:113,15:31:128:0.117:2	./.	0/1:96,36:30:132:0.273:2	0/1:101,37:30:139:0.268:2	0/1:126,41:30:167:0.246:2	0/1:113,24:30:137:0.175:2	0/1:126,25:30:151:0.166:2	0/1:151,14:30:165:0.085:2	0/1:104,32:31:136:0.235:2	0/1:104,38:30:142:0.268:2
chr17	16068463	rs74453660	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:126,20:33:146:0.137:2	0/1:105,10:32:115:0.087:2	./.	0/1:116,39:32:155:0.252:2	0/1:168,9:32:177:0.051:2	0/1:155,23:32:178:0.129:2	0/1:150,12:32:162:0.074:2	./.	./.	0/1:139,20:32:159:0.126:2	0/1:157,32:33:189:0.169:2
chr17	16068464	rs200311165	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:128,17:32:145:0.117:2	0/1:100,11:32:111:0.099:2	./.	./.	0/1:163,16:30:179:0.089:2	0/1:172,5:31:178:0.028:2	./.	0/1:116,23:32:139:0.165:2	0/1:119,15:32:135:0.112:2	0/1:143,9:33:154:0.059:2	./.
chr17	16097825	rs73281920	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,6:31:109:0.055:2	0/1:111,6:32:117:0.051:2	0/1:89,4:31:93:0.043:2	0/1:93,8:29:101:0.079:2	0/1:117,9:33:126:0.071:2	./.	0/1:80,5:29:85:0.059:2	0/1:77,4:29:81:0.049:2
chr17	16097866	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:33:88:0.045:2	./.	./.	./.	./.
chr17	16097870	rs76145228	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:64,5:30:69:0.072:2	./.	./.	0/1:82,11:30:93:0.118:2	0/1:89,7:31:96:0.073:2	0/1:76,5:31:81:0.062:2	0/1:76,7:30:84:0.084:2	0/1:88,10:31:98:0.102:2	./.	0/1:81,8:29:89:0.090:2	0/1:62,6:31:68:0.088:2
chr17	16285491	rs16962973	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,6:32:192:0.031:2	./.	./.	./.
chr17	16285497	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.
chr17	16285719	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:33:100:0.040:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	16285788	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:32:177:0.023:2
chr17	16285866	rs201547246	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:172,5:32:177:0.028:2	0/1:158,4:32:162:0.025:2	./.	./.	./.	./.	./.	0/1:175,5:29:180:0.028:2
chr17	16285899	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:186,4:33:190:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr17	16285988	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:132,6:32:138:0.043:2	./.	./.	./.	./.	./.	./.
chr17	16285997	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:132,4:32:136:0.029:2	./.	./.	./.	./.	./.	./.
chr17	16286043	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:32:155:0.026:2	./.	./.	./.
chr17	16321125	rs375026490	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,24:31:64:0.375:2	./.	./.	./.	./.	./.
chr17	16321176	rs115484193	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,22:31:43:0.512:2	./.	./.	./.	./.	./.
chr17	16322676	rs4792739	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:32:162:0.025:2	./.	./.	./.
chr17	16325968	rs8121	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:31:12:0.417:2	./.	./.	0/1:35,45:32:80:0.563:2	0/1:3,97:32:100:0.970:2	./.	./.	./.	./.
chr17	16326005	rs1129235	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:22:9:0.444:2	./.	./.	0/1:35,40:30:75:0.533:2	0/1:3,89:30:92:0.967:2	./.	./.	./.	./.
chr17	16336992	rs14039	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	./.	./.	0/1:1,85:30:86:0.988:2	./.	./.	./.	./.
chr17	16343026	rs72833950	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:48,54:31:102:0.529:2	0/1:33,31:31:65:0.484:2	./.	0/1:82,75:30:157:0.478:2	./.	./.	./.	0/1:100,57:30:157:0.363:2	./.	./.	./.
chr17	16344360	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:33:94:0.043:2	./.	./.	./.
chr17	16346932	rs4792745	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,36:31:36:1.00:2	./.	./.	./.	./.
chr17	16346951	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,16:31:40:0.400:2	./.
chr17	16347325	rs61745139	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,5:33:11:0.455:2	0/1:18,23:33:41:0.561:2	0/1:38,35:31:73:0.479:2	0/1:34,32:32:66:0.485:2	./.	./.	./.	./.	./.
chr17	16455218	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:31:151:0.026:2	./.	./.	./.	./.	./.
chr17	16456614	rs7224723	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,32:33:68:0.471:2	./.	./.	./.	./.
chr17	16525824	rs62072858	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,29:31:59:0.492:2	./.	./.	./.	./.	./.	./.
chr17	16526062	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:33:49:0.082:2	./.	./.
chr17	16526856	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:32:81:0.049:2	./.	./.	./.
chr17	16527357	rs62072859	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,23:32:59:0.390:2	./.	./.	./.	./.	./.	./.
chr17	16527795	rs8065506	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,8:32:16:0.500:2	0/1:67,29:32:96:0.302:2	0/1:43,33:31:76:0.434:2	0/1:46,48:31:94:0.511:2	./.	0/1:85,54:32:139:0.388:2	0/1:61,79:33:140:0.564:2	0/1:64,67:32:131:0.511:2	0/1:68,65:31:133:0.489:2
chr17	16537207	rs16959888	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,37:33:63:0.587:2	0/1:13,37:33:50:0.740:2	0/1:27,38:32:65:0.585:2
chr17	16593798	rs2349265	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,24:30:51:0.471:2	./.	./.	0/1:51,29:30:80:0.363:2	./.	0/1:28,23:30:51:0.451:2	./.
chr17	16593862	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,7:33:86:0.081:2	0/1:48,4:32:52:0.077:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	16593879	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,8:32:96:0.084:2	0/1:52,4:32:56:0.071:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	16612208	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,12:32:200:0.060:2	./.	./.	./.	./.
chr17	16623528	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:33:183:0.022:2	./.
chr17	16623543	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:134,4:32:138:0.029:2	./.	./.	./.	./.	./.	./.
chr17	16623859	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,8:32:200:0.040:2	./.
chr17	16623896	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:191,7:28:198:0.035:2	./.	./.	./.	./.	./.	0/1:193,5:28:198:0.025:2	./.
chr17	16635980	rs61179727	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,29:32:43:0.674:2	./.	./.	./.
chr17	16640908	rs2261445	G	A,C	.	PASS	AC=3,2;AF=0.200,0.133;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	0/1:32:15:0.200:2	./.	0/2:32:61:0.262:2	./.	./.	0/2:33:102:0.314:2	0/1:32:84:0.321:2	./.	0/1:33:90:0.322:2
chr17	16664991	rs145983138	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:42,10:32:52:0.192:2	0/1:98,40:32:138:0.290:2	./.	./.	./.	./.	0/1:62,50:32:112:0.446:2	0/1:109,39:31:148:0.264:2	0/1:137,35:31:172:0.203:2
chr17	16744236	rs200838117	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,7:33:188:0.037:2	0/1:140,9:31:149:0.060:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	16744291	rs201833339	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,104:33:168:0.619:2	0/1:84,99:33:183:0.541:2	./.	./.	./.	0/1:116,72:33:188:0.383:2	0/1:131,53:34:185:0.288:2	0/1:156,38:33:194:0.196:2	0/1:149,43:35:192:0.224:2	./.	0/1:161,27:32:188:0.144:2
chr17	16744316	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,18:29:196:0.092:2	./.	0/1:176,21:31:198:0.107:2	./.	./.
chr17	16745362	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:35:153:0.026:2
chr17	16745383	rs201851834	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,54:30:162:0.335:2	./.	./.	./.	./.	./.	./.	./.
chr17	16745456	rs201679187	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,8:31:192:0.042:2	0/1:185,9:31:194:0.046:2	./.	./.	./.	./.	0/1:185,5:32:190:0.026:2	./.
chr17	16746284	rs683209	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:186,10:32:196:0.051:2	./.	./.	./.	./.	0/1:167,20:32:187:0.107:2	0/1:168,18:33:186:0.097:2	./.
chr17	16746338	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,5:28:188:0.027:2	./.	./.	./.	./.	./.
chr17	16746343	rs200881385	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,37:32:192:0.193:2	0/1:133,48:32:181:0.265:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	16746358	rs682770	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,123:31:183:0.672:2	0/1:64,117:31:181:0.646:2	0/1:6,41:31:47:0.872:2	0/1:37,141:31:178:0.792:2	0/1:66,103:31:169:0.609:2	0/1:74,84:31:158:0.532:2	0/1:45,134:31:180:0.749:2	0/1:57,121:32:178:0.680:2	0/1:78,106:31:184:0.576:2	0/1:123,64:31:187:0.342:2	0/1:18,159:32:177:0.898:2
chr17	16746365	rs682755	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:140,40:32:180:0.222:2	0/1:144,40:31:186:0.217:2	0/1:16,29:31:45:0.644:2	0/1:130,50:31:181:0.278:2	./.	./.	./.	0/1:105,73:31:178:0.410:2	./.	0/1:118,53:31:171:0.310:2	0/1:104,66:31:171:0.388:2
chr17	16747580	rs199600638	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,65:31:197:0.330:2	./.	./.	./.	./.
chr17	16748746	rs200445368	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:73,12:30:85:0.141:2	0/1:32,9:32:41:0.220:2	./.	./.	0/1:99,6:27:105:0.057:2	0/1:78,28:28:108:0.264:2	./.	./.	0/1:104,6:29:110:0.055:2	./.	./.
chr17	16748782	rs605280	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:47,16:30:63:0.254:2	0/1:34,10:31:44:0.227:2	0/1:8,4:31:12:0.333:2	./.	./.	0/1:102,11:27:113:0.097:2	./.	0/1:115,9:31:125:0.073:2	./.	./.	0/1:26,11:31:37:0.297:2
chr17	16748785	rs648867	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,57:31:60:0.950:2	0/1:3,41:32:44:0.932:2	0/1:4,6:32:10:0.600:2	0/1:99,11:30:110:0.100:2	0/1:86,42:29:129:0.328:2	0/1:93,24:30:117:0.205:2	0/1:112,37:30:149:0.248:2	0/1:62,63:31:125:0.504:2	0/1:115,48:32:163:0.294:2	./.	0/1:0,34:31:34:1.00:2
chr17	16748833	rs648799	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,7:30:84:0.083:2	0/1:53,4:31:57:0.070:2	./.	./.	./.	./.	./.	./.	0/1:172,19:32:191:0.099:2	./.	./.
chr17	16748885	rs648417	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:97,9:32:106:0.085:2	./.	./.	./.	./.	./.	./.	0/1:145,39:33:184:0.212:2	./.	0/1:139,8:32:148:0.054:2	./.
chr17	16748989	.	G	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,17:27:39:0.436:2	0/1:15,11:32:26:0.423:2	./.	./.	0/1:8,61:29:69:0.884:2	0/1:47,25:29:72:0.347:2	./.	0/1:16,53:29:69:0.768:2	0/1:58,29:31:87:0.333:2	0/1:15,22:31:37:0.595:2	0/1:1,18:31:19:0.947:2
chr17	16842912	rs11078355	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:72,44:29:116:0.379:2	0/1:33,21:31:54:0.389:2	./.	0/1:67,73:28:140:0.521:2	0/1:0,174:29:174:1.00:2	0/1:73,52:30:125:0.416:2	0/1:0,112:30:113:1.00:2	0/1:87,97:30:184:0.527:2	0/1:2,104:30:106:0.981:2	./.	0/1:42,44:30:86:0.512:2
chr17	16842991	rs34562254	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,58:32:122:0.475:2	./.	./.	./.	./.	./.	0/1:30,21:33:51:0.412:2
chr17	16843084	rs56063729	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,5:32:18:0.278:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	16852206	rs35062843	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,61:30:146:0.421:2	./.	./.	0/1:89,67:29:158:0.429:2	./.	0/1:81,66:30:147:0.449:2	./.	./.
chr17	16855878	rs8072293	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,5:32:7:0.714:2	0/1:0,70:32:70:1.00:2	0/1:31,45:32:76:0.592:2	0/1:0,56:31:56:1.00:2	0/1:42,38:31:80:0.475:2	0/1:44,23:32:67:0.343:2	0/1:30,34:34:64:0.531:2	0/1:0,43:32:43:1.00:2	0/1:0,68:32:68:1.00:2
chr17	16892249	rs36001992	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,83:32:187:0.444:2	./.	./.	./.	./.	./.
chr17	16892265	rs9907308	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,60:31:125:0.480:2	0/1:37,51:32:88:0.580:2	0/1:0,23:30:23:1.00:2	0/1:79,96:30:175:0.549:2	0/1:3,181:30:184:0.984:2	./.	0/1:101,80:31:182:0.442:2	./.	0/1:85,100:31:185:0.541:2	0/1:71,79:31:150:0.527:2	./.
chr17	16892334	rs57096150	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:49,33:31:82:0.402:2	0/1:23,34:32:57:0.596:2	0/1:12,9:31:21:0.429:2	./.	0/1:70,58:31:128:0.453:2	./.	0/1:55,57:31:112:0.509:2	./.	./.	./.	./.
chr17	16893431	rs115691557	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,38:33:107:0.355:2	./.	./.
chr17	16893462	rs9889250	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,54:29:108:0.500:2	./.	./.	0/1:56,32:29:88:0.364:2	./.	./.
chr17	16893470	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:32:122:0.033:2	./.	./.	./.	./.
chr17	16946241	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:31:110:0.036:2	./.	./.	./.
chr17	16946261	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:31:95:0.042:2	./.	./.	./.
chr17	16960978	rs6502557	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,46:32:109:0.422:2	./.	0/1:55,55:31:110:0.500:2	0/1:49,41:32:90:0.456:2	0/1:60,38:32:98:0.388:2	0/1:0,100:32:100:1.00:2	./.	./.
chr17	17046024	rs3744137	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:53,68:31:122:0.562:2	0/1:41,47:32:88:0.534:2	0/1:14,19:31:33:0.576:2	./.	0/1:1,159:31:160:0.994:2	./.	./.	0/1:95,88:31:183:0.481:2	./.	./.	./.
chr17	17053490	rs144170910	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,6:32:165:0.036:2	./.	./.	./.	./.	./.
chr17	17062241	rs11551189	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:43,33:29:76:0.434:2	0/1:16,18:27:34:0.529:2	0/1:9,11:31:20:0.550:2	./.	0/1:2,161:29:163:0.988:2	./.	./.	0/1:75,82:28:157:0.522:2	./.	./.	./.
chr17	17069105	rs3744131	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,34:31:77:0.442:2	0/1:11,23:31:34:0.676:2	0/1:2,6:29:8:0.750:2	0/1:39,58:29:97:0.598:2	0/1:2,118:29:120:0.983:2	0/1:53,58:29:111:0.523:2	0/1:59,73:29:132:0.553:2	0/1:1,107:30:108:0.991:2	0/1:58,41:30:99:0.414:2	./.	./.
chr17	17069199	rs79436844	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,13:30:23:0.565:2	./.	./.	./.	./.	./.	./.	./.
chr17	17070605	rs61729732	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,50:30:97:0.526:2	./.	./.
chr17	17071183	rs11868392	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,18:31:31:0.581:2	./.	./.
chr17	17083360	rs61740515	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,43:29:45:0.956:2	./.
chr17	17106258	rs142631639	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:32:116:0.034:2	./.
chr17	17119761	rs61750032	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,41:32:113:0.363:2	./.	./.
chr17	17127398	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:32:61:0.066:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	17129431	rs41525346	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,21:30:49:0.429:2	0/1:32,28:29:60:0.467:2	./.	0/1:18,18:30:36:0.500:2	0/1:22,21:30:43:0.488:2	0/1:36,18:30:54:0.333:2	./.	./.
chr17	17168164	rs3182911	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,17:32:41:0.415:2	0/1:20,20:32:40:0.500:2	0/1:0,3:32:3:1.00:2	0/1:26,19:32:45:0.422:2	0/1:14,12:30:26:0.462:2	./.	./.	0/1:29,28:31:57:0.491:2	./.	./.	0/1:49,34:32:83:0.410:2
chr17	17183974	rs117743490	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,24:24:25:1.00:2	./.
chr17	17248149	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2	./.	./.	./.	./.	./.	./.
chr17	17250159	rs2240876	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,15:30:15:1.00:2	./.
chr17	17250197	rs145194793	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,6:32:13:0.462:2	./.	./.	./.	./.	./.	./.
chr17	17394611	rs1242489	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,15:33:47:0.319:2	./.	./.	0/1:0,35:32:35:1.00:2	0/1:8,10:35:18:0.556:2	0/1:12,9:33:21:0.429:2	./.
chr17	17409560	rs7946	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:45,42:31:87:0.483:2	0/1:34,29:32:63:0.460:2	./.	0/1:61,72:31:133:0.541:2	0/1:53,58:31:111:0.523:2	0/1:67,63:31:130:0.485:2	0/1:68,51:31:119:0.429:2	0/1:0,149:31:149:1.00:2	0/1:73,64:32:138:0.467:2	0/1:0,92:31:92:1.00:2	0/1:1,59:32:60:0.983:2
chr17	17415893	rs35277795	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:35,39:29:75:0.527:2	0/1:17,25:31:42:0.595:2	./.	0/1:32,41:29:73:0.562:2	./.	./.	0/1:22,19:31:41:0.463:2	0/1:33,30:30:63:0.476:2	./.	0/1:28,29:31:57:0.509:2	0/1:15,15:30:30:0.500:2
chr17	17425631	rs897453	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,41:32:68:0.603:2	0/1:22,22:31:44:0.500:2	./.	0/1:63,49:32:112:0.438:2	0/1:78,65:31:143:0.455:2	./.	0/1:63,61:31:124:0.492:2	0/1:5,132:31:137:0.964:2	0/1:68,72:32:140:0.514:2	0/1:4,57:31:61:0.934:2	0/1:44,41:32:86:0.482:2
chr17	17579509	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:33:167:0.024:2	./.	./.
chr17	17579579	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:30:109:0.037:2	./.
chr17	17696531	rs3803763	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:32:15:0.533:2	0/1:0,34:32:34:1.00:2	./.	0/1:8,10:32:18:0.556:2	./.	0/1:0,19:29:19:1.00:2	./.	0/1:3,3:34:6:0.500:2
chr17	17696649	rs199605856	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,26:30:55:0.473:2	./.	./.	./.	./.	./.
chr17	17696755	rs11649804	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,42:30:65:0.646:2	0/1:1,53:29:54:0.981:2	./.	0/1:32,28:29:60:0.467:2	./.	0/1:24,30:30:54:0.556:2	./.	0/1:15,14:31:29:0.483:2
chr17	17697099	rs11078398	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,4:32:27:0.148:2	0/1:9,13:30:22:0.591:2	./.	./.	./.	0/1:11,5:32:16:0.313:2	./.	0/1:11,5:30:16:0.313:2
chr17	17697102	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,7:28:28:0.250:2	0/1:14,10:33:24:0.417:2	./.	0/1:31,6:31:38:0.162:2	./.	./.	./.	./.
chr17	17697869	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:179,8:32:187:0.043:2	./.	./.	./.	./.	./.	./.
chr17	17698254	rs8067439	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,10:32:16:0.625:2	0/1:10,3:32:13:0.231:2	0/1:2,4:29:6:0.667:2	0/1:5,16:33:21:0.762:2	./.	0/1:0,42:32:42:1.00:2	0/1:3,7:32:10:0.700:2	0/1:0,29:32:29:1.00:2	0/1:4,16:33:20:0.800:2	0/1:0,27:31:27:1.00:2	0/1:9,17:32:27:0.654:2
chr17	17700573	rs4925112	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,5:27:9:0.556:2	./.	./.	./.	./.	./.
chr17	17700792	rs35686634	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,22:30:48:0.458:2	./.	./.	./.	./.	./.
chr17	17707105	rs3818717	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:23,28:31:51:0.549:2	0/1:12,8:26:20:0.400:2	./.	0/1:56,28:30:84:0.333:2	./.	0/1:47,31:28:78:0.397:2	0/1:58,37:29:95:0.389:2	0/1:0,92:29:92:1.00:2	./.	0/1:1,40:29:41:0.976:2	0/1:27,25:28:52:0.481:2
chr17	17717574	rs34882915	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,10:29:25:0.400:2	./.	./.
chr17	17896090	rs4368210	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,26:31:59:0.441:2	0/1:18,21:32:39:0.538:2	0/1:4,4:30:8:0.500:2	0/1:37,22:31:59:0.373:2	0/1:0,70:30:70:1.00:2	./.	./.	./.	0/1:35,50:32:85:0.588:2	./.	0/1:32,45:32:77:0.584:2
chr17	17896199	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,4:31:109:0.037:2	./.	./.	./.	./.	./.	./.	./.
chr17	17896205	rs4584886	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,41:33:76:0.539:2	0/1:23,33:32:56:0.589:2	0/1:7,9:33:16:0.563:2	0/1:49,50:32:99:0.505:2	0/1:2,129:32:131:0.985:2	./.	./.	./.	0/1:55,48:33:103:0.466:2	./.	0/1:61,48:32:109:0.440:2
chr17	17907768	rs11656629	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,55:31:130:0.423:2	0/1:96,67:32:163:0.411:2	./.	./.	./.	./.
chr17	17921995	rs33997182	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,46:31:78:0.590:2	0/1:32,51:31:83:0.614:2	./.	./.	./.	./.
chr17	17948475	rs2955355	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,50:31:110:0.455:2	0/1:38,38:32:76:0.500:2	0/1:18,11:31:29:0.379:2	0/1:80,57:31:137:0.416:2	./.	0/1:1,130:31:131:0.992:2	0/1:2,99:31:101:0.980:2	0/1:3,132:31:135:0.978:2	0/1:66,78:33:144:0.542:2	0/1:2,124:31:126:0.984:2	0/1:58,81:31:139:0.583:2
chr17	17997209	rs2230316	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,86:32:177:0.486:2	0/1:51,53:31:104:0.510:2	0/1:13,11:32:24:0.458:2	0/1:107,86:31:193:0.446:2	./.	./.	0/1:102,88:31:190:0.463:2	0/1:6,184:31:190:0.968:2	0/1:89,92:32:181:0.508:2	0/1:0,169:31:169:1.00:2	0/1:107,82:32:189:0.434:2
chr17	18003671	rs2272570	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:33:92:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,126:33:126:1.00:2	0/1:0,112:32:112:1.00:2	0/1:85,66:32:151:0.437:2	0/1:83,78:33:161:0.484:2	0/1:0,137:33:137:1.00:2	0/1:1,136:33:137:0.993:2	0/1:0,114:33:114:1.00:2	0/1:0,128:33:128:1.00:2
chr17	18022461	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,3:32:13:0.231:2	./.	./.	./.	./.
chr17	18022937	rs183969516	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,9:29:15:0.600:2	./.	./.	./.	./.	./.
chr17	18023225	rs200382813	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:29:15:0.533:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	18023509	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,4:27:37:0.108:2	./.	./.
chr17	18023897	rs2955365	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:27:5:0.600:2	./.	./.	./.	0/1:0,8:27:8:1.00:2	0/1:2,3:26:5:0.600:2	./.	./.	0/1:0,10:27:10:1.00:2	./.	./.
chr17	18039075	rs114328138	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,29:32:67:0.433:2	./.	./.	./.	./.	./.
chr17	18041507	rs2280777	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,4:29:8:0.500:2	0/1:35,19:31:54:0.352:2	0/1:37,52:31:89:0.584:2	./.	0/1:40,35:31:75:0.467:2	0/1:3,68:31:71:0.958:2	./.	0/1:28,31:31:59:0.525:2	0/1:1,47:31:48:0.979:2
chr17	18043817	rs2072652	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,39:31:92:0.424:2	./.	./.	./.	./.	./.	0/1:22,20:33:42:0.476:2
chr17	18046898	rs854777	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:28:77:1.00:2	0/1:0,41:29:41:1.00:2	0/1:0,17:29:17:1.00:2	0/1:1,85:29:86:0.988:2	0/1:1,116:29:117:0.991:2	0/1:74,61:29:135:0.452:2	0/1:91,46:29:137:0.336:2	0/1:1,113:29:114:0.991:2	0/1:56,45:30:102:0.446:2	0/1:58,32:30:90:0.356:2	0/1:0,69:29:69:1.00:2
chr17	18046936	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,44:28:70:0.629:2	./.
chr17	18047189	rs2272571	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,27:33:38:0.711:2	./.	./.	./.	./.	./.	0/1:18,19:32:37:0.514:2
chr17	18052867	rs2955379	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:30:94:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,142:30:142:1.00:2	0/1:0,135:30:135:1.00:2	0/1:0,135:30:135:1.00:2	0/1:0,148:29:149:1.00:2	0/1:0,152:29:152:1.00:2	0/1:0,122:30:123:1.00:2	0/1:0,115:30:116:1.00:2	0/1:0,135:29:135:1.00:2
chr17	18054222	rs16960959	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,13:31:22:0.591:2	./.	./.
chr17	18055229	rs854772	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,31:31:32:0.969:2	0/1:0,21:32:21:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,55:31:55:1.00:2	0/1:26,27:31:53:0.509:2	0/1:28,28:31:56:0.500:2	0/1:36,31:32:68:0.463:2	0/1:0,71:32:71:1.00:2	./.	0/1:36,14:31:50:0.280:2	0/1:23,26:32:49:0.531:2
chr17	18057167	rs712270	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,8:27:13:0.615:2	0/1:94,57:30:151:0.377:2	./.	./.	0/1:114,71:30:185:0.384:2	0/1:4,177:30:181:0.978:2	./.	0/1:54,52:31:106:0.491:2	0/1:78,50:30:128:0.391:2
chr17	18058521	rs712272	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,17:32:47:0.362:2	./.	./.	0/1:20,34:30:54:0.630:2	0/1:2,41:31:43:0.953:2	./.	0/1:8,27:29:35:0.771:2	0/1:19,20:30:39:0.513:2
chr17	18064730	rs8077577	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,42:32:43:0.977:2	0/1:0,18:32:18:1.00:2	./.	0/1:41,32:31:73:0.438:2	0/1:31,25:31:56:0.446:2	0/1:40,30:31:70:0.429:2	./.	./.	./.	./.	./.
chr17	18064762	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,15:32:40:0.385:2	./.	./.	./.	./.	./.	./.	./.
chr17	18077175	rs854800	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,45:27:46:0.978:2	0/1:0,41:27:41:1.00:2	0/1:0,4:27:4:1.00:2	0/1:0,80:27:80:1.00:2	0/1:0,51:27:51:1.00:2	0/1:27,31:27:58:0.534:2	0/1:24,21:26:45:0.467:2	0/1:0,39:26:39:1.00:2	0/1:34,33:28:67:0.493:2	0/1:37,32:26:69:0.464:2	0/1:0,53:26:53:1.00:2
chr17	18088094	rs11078411	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:30:50:1.00:2	0/1:0,31:31:31:1.00:2	0/1:2,7:30:9:0.778:2	0/1:49,46:30:95:0.484:2	0/1:41,59:30:100:0.590:2	0/1:40,44:30:84:0.524:2	./.	./.	./.	./.	./.
chr17	18137141	rs2290505	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,4:30:86:0.047:2	./.	0/1:11,13:29:24:0.542:2	0/1:0,92:30:92:1.00:2	0/1:80,87:30:167:0.521:2	0/1:58,57:31:115:0.496:2	0/1:1,138:30:139:0.993:2	0/1:0,126:30:126:1.00:2	0/1:0,99:31:99:1.00:2	0/1:0,80:30:80:1.00:2	0/1:0,83:29:83:1.00:2
chr17	18140836	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:35:132:0.030:2	./.	./.	./.	./.	./.
chr17	18148485	rs7498	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:3,85:32:88:0.966:2	0/1:0,48:31:48:1.00:2	0/1:4,6:31:10:0.600:2	./.	0/1:32,33:31:65:0.508:2	0/1:41,43:31:84:0.512:2	./.	./.	./.	./.	./.
chr17	18156979	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,10:14:101:0.099:2	./.	./.	./.	./.	./.	./.	./.
chr17	18156983	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,16:12:100:0.160:2	./.	./.	./.	./.	./.
chr17	18157950	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:31:126:0.032:2	./.	./.
chr17	18167505	rs2605143	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,15:33:17:0.882:2	0/1:0,12:32:12:1.00:2	0/1:0,2:31:2:1.00:2	0/1:2,3:33:5:0.600:2	0/1:0,17:33:17:1.00:2	./.	0/1:1,4:36:5:0.800:2	0/1:0,6:33:6:1.00:2	0/1:0,13:32:13:1.00:2	0/1:4,3:31:7:0.429:2	0/1:0,9:33:9:1.00:2
chr17	18167684	rs12603700	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,23:31:33:0.697:2	./.	./.	./.	./.	./.	./.
chr17	18181601	rs147447113	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,17:32:22:0.773:2	./.	./.	./.	./.	./.	./.
chr17	18188805	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:138,4:31:142:0.028:2	./.	./.	./.	./.	./.	./.
chr17	18193941	rs2230154	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:32:7:0.571:2	0/1:48,50:32:98:0.510:2	./.	./.	0/1:64,60:32:124:0.484:2	0/1:3,107:31:110:0.973:2	./.	0/1:37,26:31:63:0.413:2	0/1:0,92:32:92:1.00:2
chr17	18210284	rs7217776	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,16:34:28:0.571:2	./.	./.
chr17	18217958	rs2230153	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,84:32:160:0.525:2	./.	./.
chr17	18219742	rs34824853	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,13:33:39:0.333:2	./.	./.	./.
chr17	18219835	rs3829956	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,61:31:61:1.00:2	0/1:1,42:31:43:0.977:2	0/1:10,4:30:14:0.286:2	./.	0/1:43,38:30:81:0.469:2	./.	./.	./.	./.	./.	./.
chr17	18220674	rs8080966	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,22:32:59:0.373:2	./.	./.	0/1:41,35:32:76:0.461:2	0/1:2,58:33:60:0.967:2	./.	0/1:22,21:32:43:0.488:2	0/1:0,61:32:61:1.00:2
chr17	18220770	rs1563632	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,53:31:55:0.964:2	0/1:0,29:30:30:1.00:2	0/1:0,5:29:5:1.00:2	0/1:41,16:31:57:0.281:2	0/1:1,64:31:65:0.985:2	./.	0/1:29,29:30:58:0.500:2	0/1:0,60:31:60:1.00:2	0/1:37,31:32:68:0.456:2	0/1:18,20:31:38:0.526:2	0/1:0,64:31:64:1.00:2
chr17	18221010	rs12449313	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,41:33:42:0.976:2	0/1:0,14:32:14:1.00:2	0/1:2,3:32:5:0.600:2	./.	0/1:27,21:30:50:0.438:2	./.	./.	./.	./.	./.	./.
chr17	18221134	rs1563631	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,5:30:13:0.385:2	0/1:38,45:31:83:0.542:2	./.	./.	0/1:58,54:31:112:0.482:2	0/1:1,68:32:69:0.986:2	./.	0/1:28,25:32:53:0.472:2	0/1:0,64:32:64:1.00:2
chr17	18226177	rs4925171	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,5:32:13:0.385:2	0/1:117,71:30:188:0.378:2	./.	./.	0/1:97,75:31:173:0.436:2	0/1:4,167:30:171:0.977:2	0/1:82,54:32:136:0.397:2	0/1:62,58:31:120:0.483:2	0/1:1,96:31:97:0.990:2
chr17	18232096	rs1979277	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,10:31:21:0.476:2	./.	./.	0/1:10,6:31:16:0.375:2	0/1:0,21:30:21:1.00:2	0/1:12,9:30:21:0.429:2	0/1:2,13:31:15:0.867:2	0/1:0,29:31:29:1.00:2
chr17	18243565	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,4:31:57:0.070:2	./.	./.	./.	./.	./.	./.	./.
chr17	18251641	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:28:64:0.063:2	./.	./.	./.	./.
chr17	18256979	rs2273026	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,13:29:31:0.419:2	./.	./.	./.	./.	./.	./.
chr17	18284262	rs570145	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,107:31:108:0.991:2	0/1:0,53:31:54:1.00:2	0/1:0,28:30:28:1.00:2	0/1:112,76:31:188:0.404:2	0/1:0,187:30:187:1.00:2	./.	0/1:77,102:31:179:0.570:2	0/1:2,179:31:181:0.989:2	0/1:95,96:31:191:0.503:2	0/1:88,68:31:156:0.436:2	0/1:0,122:30:122:1.00:2
chr17	18284826	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,4:28:74:0.054:2	./.	./.	0/1:45,6:26:51:0.118:2	./.	./.	./.	./.
chr17	18284834	rs112860829	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,18:30:47:0.383:2	./.	./.
chr17	18291544	rs586322	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:7,160:29:167:0.958:2	0/1:3,92:29:95:0.968:2	0/1:0,13:29:13:1.00:2	0/1:124,63:30:187:0.337:2	0/1:2,108:28:110:0.982:2	./.	0/1:152,42:30:194:0.216:2	0/1:0,187:29:187:1.00:2	0/1:130,66:30:196:0.337:2	0/1:121,57:30:178:0.320:2	0/1:1,182:29:183:0.995:2
chr17	18291559	rs9890369	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:96,76:33:172:0.442:2	0/1:69,48:32:117:0.410:2	./.	./.	0/1:2,131:32:133:0.985:2	./.	./.	./.	./.	./.	./.
chr17	18330314	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,5:26:11:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	18330381	.	C	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,23:31:47:0.489:2	0/1:11,23:31:34:0.676:2	./.	./.	0/1:23,71:30:94:0.755:2	0/1:59,25:30:84:0.298:2	./.	0/1:29,46:30:75:0.613:2	0/1:75,35:31:110:0.318:2	0/1:32,18:29:50:0.360:2	0/1:3,10:31:13:0.769:2
chr17	18330485	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:128,8:32:136:0.059:2	./.	./.	0/1:183,4:35:189:0.021:2	./.	./.	./.	0/1:124,55:32:179:0.307:2	./.	0/1:144,11:34:156:0.071:2	./.
chr17	18330537	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,24:32:191:0.126:2	./.	./.
chr17	18330585	.	A	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,32:31:32:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,5:32:5:1.00:2	./.	0/1:49,26:29:75:0.347:2	0/1:106,17:30:123:0.138:2	0/1:97,30:31:127:0.236:2	0/1:58,34:31:92:0.370:2	0/1:110,23:32:133:0.173:2	./.	0/1:1,9:30:10:0.900:2
chr17	18330624	rs201345203	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,34:31:45:0.756:2	0/1:3,11:32:14:0.786:2	./.	./.	./.	0/1:49,46:28:95:0.484:2	./.	./.	0/1:146,31:28:177:0.175:2	0/1:59,15:30:74:0.203:2	0/1:15,12:29:27:0.444:2
chr17	18331720	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,6:32:73:0.082:2	./.	./.	./.
chr17	18331765	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,6:31:52:0.115:2	./.	./.	0/1:28,5:33:33:0.152:2
chr17	18331777	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,4:29:39:0.103:2	./.	./.	./.
chr17	18331789	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,4:30:31:0.129:2	./.	./.	./.
chr17	18331797	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,3:33:27:0.111:2
chr17	18332341	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,7:28:167:0.042:2	./.	./.	./.
chr17	18333005	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:36,14:31:50:0.280:2	0/1:19,6:31:25:0.240:2	./.	0/1:179,16:32:195:0.082:2	./.	./.	./.	0/1:63,38:32:101:0.376:2	./.	0/1:183,9:33:192:0.047:2	0/1:40,24:31:64:0.375:2
chr17	18333012	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,39:31:50:0.780:2	0/1:14,9:31:23:0.391:2	./.	0/1:141,53:31:194:0.273:2	0/1:161,34:32:195:0.174:2	0/1:170,22:30:192:0.115:2	0/1:175,20:32:195:0.103:2	0/1:45,56:31:101:0.554:2	0/1:183,5:32:188:0.027:2	0/1:187,8:31:195:0.041:2	0/1:16,49:31:65:0.754:2
chr17	18333027	rs373892613	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,6:31:19:0.316:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	18333032	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,71:30:183:0.388:2	./.	./.	./.	./.	./.
chr17	18333086	rs145669323	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2
chr17	18333911	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,3:36:72:0.042:2
chr17	18333915	rs148961204	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,119:31:156:0.763:2	0/1:38,133:31:171:0.778:2	./.	./.	0/1:61,4:32:65:0.062:2	./.	0/1:101,84:31:185:0.454:2	./.
chr17	18333945	rs370551614	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:156,4:33:160:0.025:2	./.	./.	./.	./.	./.	./.
chr17	18333988	rs199565264	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,16:27:127:0.126:2	./.	./.	./.	./.	./.	./.	./.
chr17	18333992	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,9:31:60:0.150:2
chr17	18334009	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,17:30:82:0.207:2
chr17	18335080	.	G	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:156,29:32:185:0.157:2	0/1:154,40:32:195:0.206:2	./.	./.	./.	0/1:177,11:31:188:0.059:2	0/1:188,7:33:195:0.036:2	0/1:183,9:33:192:0.047:2	0/1:179,12:32:191:0.063:2	./.	0/1:163,22:33:185:0.119:2
chr17	18335135	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,39:31:176:0.222:2	0/1:108,33:32:141:0.234:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	18335164	.	G	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:139,31:30:170:0.182:2	0/1:117,14:31:131:0.107:2	./.	./.	0/1:162,8:29:170:0.047:2	0/1:153,4:31:157:0.025:2	0/1:127,12:28:139:0.086:2	0/1:132,11:29:143:0.077:2	0/1:126,15:30:141:0.106:2	0/1:155,8:29:163:0.049:2	./.
chr17	18380144	rs201486606	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:157,33:31:190:0.174:2	0/1:150,35:30:186:0.189:2	./.	./.	./.	./.	./.	./.
chr17	18380154	rs1682220	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,114:30:116:0.983:2	0/1:3,77:29:80:0.963:2	0/1:14,21:29:35:0.600:2	0/1:109,85:29:194:0.438:2	0/1:97,96:28:193:0.497:2	0/1:61,131:29:192:0.682:2	0/1:114,80:29:195:0.412:2	0/1:0,192:29:192:1.00:2	0/1:130,66:30:196:0.337:2	0/1:105,87:29:192:0.453:2	0/1:79,113:28:192:0.589:2
chr17	18380217	rs369301587	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,31:32:150:0.207:2	./.
chr17	18387268	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,26:31:196:0.133:2	./.	./.	./.	./.	./.
chr17	18389433	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,20:29:189:0.106:2	./.	./.	./.	./.	./.
chr17	18390993	rs3907320	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:83,37:31:120:0.308:2	0/1:137,55:32:192:0.286:2	./.	./.	./.	./.	0/1:146,33:33:179:0.184:2	0/1:147,42:31:189:0.222:2	0/1:143,51:31:194:0.263:2
chr17	18391003	rs3907319	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:91,37:32:128:0.289:2	0/1:139,51:32:190:0.268:2	./.	./.	./.	./.	0/1:150,29:33:179:0.162:2	0/1:140,52:31:192:0.271:2	0/1:129,57:32:186:0.306:2
chr17	18394056	rs201967116	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,40:32:193:0.207:2	./.
chr17	18395272	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,6:30:186:0.032:2	./.	./.	./.
chr17	18396131	rs138238232	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,81:32:88:0.920:2	0/1:1,72:31:73:0.986:2	./.	./.	./.	0/1:151,34:31:185:0.184:2	0/1:164,34:32:199:0.172:2	0/1:84,74:31:158:0.468:2	./.	./.	0/1:121,51:31:173:0.297:2
chr17	18396152	rs143719999	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,43:32:188:0.229:2	./.	./.
chr17	18397546	rs201118771	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,37:33:197:0.188:2	./.
chr17	18498463	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,5:34:190:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr17	18498478	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:154,4:33:158:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr17	18509425	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,12:33:61:0.197:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	18509540	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,5:31:67:0.075:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	18509548	.	G	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:55,8:31:63:0.127:2	0/1:166,16:30:182:0.088:2	0/1:183,14:31:197:0.071:2	0/1:191,9:31:200:0.045:2	0/1:177,11:32:188:0.059:2	0/1:177,17:32:194:0.088:2	0/1:174,18:30:193:0.094:2	0/1:162,14:33:176:0.080:2	0/1:175,12:31:187:0.064:2
chr17	18509611	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,10:30:195:0.051:2	./.
chr17	18509834	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,31:31:200:0.155:2	./.	./.	./.	./.
chr17	18513448	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:32:192:0.021:2
chr17	18528419	rs376330472	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:101,6:32:107:0.056:2	./.	./.	./.	0/1:153,10:32:163:0.061:2	./.	./.	./.	./.	./.	./.
chr17	18528472	rs144491541	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,79:29:183:0.432:2	0/1:100,81:29:181:0.448:2	./.	0/1:73,60:30:133:0.451:2	./.	./.
chr17	18528536	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:108,7:31:115:0.061:2	0/1:75,5:31:80:0.063:2	./.	./.	0/1:91,5:30:96:0.052:2	0/1:108,10:29:118:0.085:2	./.	./.	./.	./.	./.
chr17	18528623	rs34925025	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,46:33:100:0.460:2	0/1:38,33:32:71:0.465:2	0/1:59,42:32:101:0.416:2	0/1:0,51:33:51:1.00:2	./.	0/1:43,31:33:74:0.419:2	0/1:45,34:31:79:0.430:2	./.
chr17	18528682	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,6:30:96:0.063:2	./.	./.	./.	./.	./.
chr17	18528686	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,6:31:94:0.064:2	./.	./.	./.	./.	./.
chr17	18528708	rs2936649	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,6:26:77:0.078:2	./.	./.	./.	./.	./.
chr17	18541705	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,4:33:93:0.043:2	./.	./.	./.	./.	./.	./.
chr17	18542519	rs74452761	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:122,48:30:170:0.282:2	0/1:87,83:31:170:0.488:2	0/1:68,105:30:173:0.607:2	0/1:93,79:31:172:0.459:2	./.	0/1:131,37:30:169:0.220:2	0/1:117,51:31:168:0.304:2	./.
chr17	18544392	rs200600755	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,93:32:197:0.472:2	0/1:147,49:33:196:0.250:2	./.	0/1:146,46:34:192:0.240:2	./.	./.
chr17	18565350	rs9912644	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:131,53:33:185:0.288:2	0/1:115,56:33:171:0.327:2	0/1:9,17:33:26:0.654:2	./.	./.	./.	./.	0/1:89,84:33:173:0.486:2	./.	./.	./.
chr17	18565409	rs200670415	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:101,20:31:122:0.165:2	0/1:87,25:30:112:0.223:2	./.	0/1:101,22:31:123:0.179:2	0/1:91,17:31:108:0.157:2	0/1:107,12:31:119:0.101:2	./.	./.	0/1:128,22:32:151:0.147:2	0/1:133,15:31:148:0.101:2	./.
chr17	18565423	rs9912852	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:55,59:32:114:0.518:2	0/1:63,29:32:92:0.315:2	0/1:7,8:31:15:0.533:2	./.	./.	./.	./.	0/1:73,66:31:139:0.475:2	./.	./.	./.
chr17	18566585	rs191626006	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,14:33:38:0.368:2	./.	./.	./.	./.	./.	./.	./.
chr17	18584123	rs200143783	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,18:31:77:0.234:2	./.	./.	./.	./.	0/1:79,24:33:103:0.233:2	./.
chr17	18584142	rs116808485	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,11:33:65:0.169:2	./.	./.	./.	./.	0/1:77,15:32:92:0.163:2	./.
chr17	18610134	rs1973459	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,96:33:97:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,9:32:9:1.00:2	./.	./.	0/1:40,36:32:76:0.474:2	0/1:5,43:32:48:0.896:2	0/1:56,56:32:112:0.500:2	0/1:51,60:33:111:0.541:2	./.	0/1:1,107:32:108:0.991:2
chr17	18630995	rs8075739	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:59,51:32:110:0.464:2	0/1:19,41:32:60:0.683:2	0/1:3,9:33:12:0.750:2	./.	./.	./.	./.	0/1:103,64:32:167:0.383:2	0/1:74,58:33:132:0.439:2	./.	./.
chr17	18634541	rs8073459	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,10:29:31:0.323:2	./.	./.	./.	./.
chr17	18638760	.	G	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,7:30:39:0.179:2	./.	0/1:35,7:31:42:0.167:2	./.	./.	0/1:37,4:31:41:0.098:2	./.
chr17	18647625	rs74502778	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,164:30:170:0.970:2	0/1:2,98:31:100:0.980:2	0/1:33,9:32:42:0.214:2	0/1:138,51:31:189:0.270:2	0/1:131,50:30:181:0.276:2	0/1:119,66:30:185:0.357:2	0/1:108,86:31:194:0.443:2	0/1:8,182:31:190:0.958:2	0/1:132,62:32:194:0.320:2	0/1:3,186:30:191:0.984:2	0/1:5,188:30:193:0.974:2
chr17	18653070	rs9895749	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,36:32:118:0.305:2	0/1:50,35:32:85:0.412:2	0/1:10,10:31:20:0.500:2	0/1:71,119:32:190:0.626:2	./.	0/1:140,51:31:191:0.267:2	./.	0/1:5,108:32:113:0.956:2	0/1:94,58:33:152:0.382:2	0/1:142,39:33:181:0.215:2	./.
chr17	18653145	rs200535885	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:131,59:30:190:0.311:2	./.	0/1:137,50:28:187:0.267:2	./.	./.	./.	0/1:117,58:29:175:0.331:2	./.
chr17	18653188	rs139431164	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,10:30:31:0.323:2	./.	./.	./.	0/1:139,56:31:195:0.287:2	./.	./.	./.	./.
chr17	18653276	rs200711350	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,14:31:42:0.333:2	./.	./.	./.	0/1:128,69:31:197:0.350:2	./.	./.	./.	./.
chr17	18659467	rs142047019	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,64:33:141:0.454:2	./.
chr17	18681913	rs77288131	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,39:30:69:0.565:2	./.	0/1:38,44:31:82:0.537:2	./.	0/1:30,35:30:66:0.538:2	./.	0/1:27,30:31:57:0.526:2	./.
chr17	18682163	rs199779085	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,6:32:35:0.171:2	./.	./.	0/1:164,33:31:198:0.168:2	0/1:160,40:29:200:0.200:2	./.	./.	./.	0/1:164,25:32:189:0.132:2
chr17	18682409	rs77817142	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,90:29:190:0.474:2	./.	./.	./.	./.	./.
chr17	18684588	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,4:31:71:0.056:2	./.	./.	./.	./.	./.	./.	./.
chr17	18684642	rs75174617	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,34:28:47:0.723:2	0/1:23,13:30:36:0.361:2	0/1:4,7:27:11:0.636:2	0/1:18,22:28:40:0.550:2	0/1:20,23:28:43:0.535:2	./.	./.	0/1:22,25:29:47:0.532:2	0/1:10,24:31:34:0.706:2	0/1:20,19:27:39:0.487:2	./.
chr17	18694277	rs61075345	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,176:33:177:0.994:2	0/1:1,171:32:172:0.994:2	0/1:0,63:32:63:1.00:2	0/1:0,183:33:183:1.00:2	0/1:89,95:33:184:0.516:2	0/1:0,183:33:184:1.00:2	0/1:103,88:33:191:0.461:2	0/1:0,181:33:181:1.00:2	0/1:0,181:33:181:1.00:2	0/1:0,175:33:175:1.00:2	0/1:1,170:33:171:0.994:2
chr17	18702220	rs8080471	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,100:33:100:1.00:2	0/1:0,77:32:77:1.00:2	0/1:5,4:31:9:0.444:2	0/1:98,85:33:183:0.464:2	0/1:50,36:33:86:0.419:2	0/1:73,68:32:141:0.482:2	0/1:57,51:33:108:0.472:2	0/1:104,67:32:171:0.392:2	0/1:0,155:34:155:1.00:2	0/1:98,67:33:165:0.406:2	0/1:2,165:33:167:0.988:2
chr17	18702254	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:30:86:0.047:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	18708882	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.	./.	./.	./.	./.	0/1:172,4:33:176:0.023:2
chr17	18775900	rs4393623	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,12:30:39:0.308:2	0/1:11,24:28:35:0.686:2	0/1:0,4:26:4:1.00:2	0/1:30,22:30:52:0.423:2	0/1:10,25:28:35:0.714:2	0/1:17,15:28:32:0.469:2	0/1:15,22:30:37:0.595:2	0/1:33,29:29:62:0.468:2	0/1:32,47:30:79:0.595:2	0/1:14,18:29:32:0.563:2	./.
chr17	18827217	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,11:31:24:0.458:2	0/1:10,8:30:18:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	18832187	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:32:138:0.029:2	./.	./.	./.	./.
chr17	18855611	rs2076562	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,132:30:132:1.00:2	0/1:3,71:27:74:0.959:2	./.	0/1:94,92:29:186:0.495:2	0/1:102,75:29:177:0.424:2	./.	0/1:91,92:30:183:0.503:2	./.	0/1:107,83:30:190:0.437:2	0/1:102,86:29:188:0.457:2	./.
chr17	18874720	rs916823	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,24:28:50:0.480:2	0/1:12,6:29:18:0.333:2	./.	0/1:23,8:28:31:0.258:2	0/1:18,26:27:44:0.591:2	0/1:0,43:29:43:1.00:2	0/1:0,22:29:22:1.00:2	0/1:16,18:30:34:0.529:2	0/1:25,12:27:37:0.324:2	0/1:26,26:28:52:0.500:2	0/1:22,21:29:43:0.488:2
chr17	18880268	rs2472715	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,6:31:12:0.500:2	0/1:31,31:29:62:0.500:2	0/1:67,54:30:121:0.446:2	./.	0/1:3,97:30:100:0.970:2	0/1:47,44:30:91:0.484:2	./.	0/1:29,29:30:58:0.500:2	./.
chr17	18881970	rs201626154	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,31:29:71:0.437:2	./.	./.	./.	./.	./.
chr17	18907029	rs2074283	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:33:5:0.600:2	./.	./.
chr17	18918396	rs2074279	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,74:31:146:0.507:2	./.	0/1:50,40:29:90:0.444:2
chr17	18923180	rs12604020	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,19:30:30:0.633:2	./.	0/1:18,14:29:32:0.438:2
chr17	18996549	rs78735049	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,5:27:12:0.417:2
chr17	18997015	rs73982623	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,53:32:144:0.368:2	./.	0/1:171,20:32:191:0.105:2	./.	0/1:99,60:31:159:0.377:2	./.	./.	./.
chr17	18997106	rs201530851	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,36:28:175:0.206:2	./.	./.	./.	0/1:158,28:27:186:0.151:2	./.	./.	./.
chr17	19061602	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,4:30:34:0.118:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	19061608	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,9:28:180:0.050:2	./.	./.	./.	./.	./.
chr17	19074960	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:193,4:33:197:0.020:2	./.	./.	./.	./.	./.	./.
chr17	19123272	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:159,4:33:163:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr17	19232078	rs6587220	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,84:31:85:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,125:32:125:1.00:2	0/1:0,144:32:144:1.00:2	0/1:0,154:32:154:1.00:2	0/1:0,166:32:166:1.00:2	0/1:1,132:32:133:0.992:2	0/1:0,136:33:136:1.00:2	0/1:0,85:32:86:1.00:2	0/1:0,103:32:103:1.00:2
chr17	19284136	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,5:28:113:0.044:2
chr17	19285187	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:31:11:0.364:2	./.	./.	./.
chr17	19290506	rs373991269	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,14:29:31:0.467:2	./.	./.	./.
chr17	19315864	rs368477103	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,13:30:49:0.265:2
chr17	19319374	rs76138388	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,9:29:33:0.273:2	./.	./.	0/1:17,10:28:27:0.370:2	./.	./.
chr17	19454725	rs2247437	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,28:33:88:0.318:2	0/1:71,30:33:101:0.297:2
chr17	19454733	rs2247436	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,33:32:81:0.407:2	0/1:59,28:30:87:0.322:2	0/1:71,32:32:103:0.311:2
chr17	19575096	rs61737992	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,22:31:56:0.393:2	./.	./.	./.	./.	./.
chr17	19578873	rs7216	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:25,40:33:65:0.615:2	0/1:25,20:33:45:0.444:2	./.	0/1:1,61:32:62:0.984:2	./.	0/1:0,59:32:59:1.00:2	0/1:24,21:33:45:0.467:2	0/1:27,53:32:80:0.663:2	0/1:32,42:33:74:0.568:2	0/1:0,58:33:58:1.00:2	./.
chr17	19608018	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,40:32:74:0.541:2	./.	./.	./.	./.	./.
chr17	19608773	rs4925042	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:10,9:31:19:0.474:2	0/1:5,5:32:10:0.500:2	./.	0/1:0,24:30:24:1.00:2	./.	0/1:13,12:32:25:0.480:2	0/1:22,14:31:36:0.389:2	./.	0/1:18,12:32:31:0.400:2	./.	./.
chr17	19617236	rs4924792	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:15,25:30:40:0.625:2	0/1:18,15:31:33:0.455:2	./.	0/1:39,37:31:77:0.487:2	./.	0/1:0,85:31:85:1.00:2	0/1:17,31:29:48:0.646:2	./.	0/1:28,42:32:70:0.600:2	./.	./.
chr17	19642952	rs2228100	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:24,20:28:44:0.455:2	0/1:12,13:29:25:0.520:2	./.	0/1:36,32:29:68:0.471:2	./.	0/1:0,77:28:77:1.00:2	0/1:31,37:29:68:0.544:2	./.	0/1:36,41:29:77:0.532:2	./.	./.
chr17	19644472	rs2072330	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,15:32:15:1.00:2	0/1:49,34:31:83:0.410:2	0/1:41,29:31:70:0.414:2	0/1:56,3:33:59:0.051:2	0/1:49,49:32:98:0.500:2	./.	./.	0/1:0,87:32:87:1.00:2	0/1:48,48:32:96:0.500:2
chr17	19645412	rs57633837	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,83:32:182:0.459:2	./.	./.	./.	./.	./.
chr17	19645938	rs887241	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,22:27:45:0.489:2	0/1:9,18:30:27:0.667:2	0/1:0,13:29:13:1.00:2	0/1:0,87:30:87:1.00:2	0/1:54,49:29:103:0.476:2	0/1:0,78:29:78:1.00:2	0/1:3,112:29:115:0.974:2	./.	0/1:31,39:28:70:0.557:2	0/1:0,62:29:62:1.00:2	0/1:33,18:27:51:0.353:2
chr17	19687085	rs56296267	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,25:31:71:0.352:2	./.	./.	./.	./.	./.
chr17	19713740	rs150122	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,122:32:122:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,180:31:180:1.00:2	0/1:1,123:31:124:0.992:2	0/1:0,176:31:176:1.00:2	0/1:0,118:31:118:1.00:2	0/1:1,180:31:181:0.994:2	0/1:0,184:31:184:1.00:2	0/1:0,161:31:162:1.00:2	0/1:0,189:31:189:1.00:2
chr17	19729495	rs157397	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,117:30:117:1.00:2	0/1:0,73:29:73:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,149:30:149:1.00:2	0/1:0,66:30:66:1.00:2	0/1:1,92:29:93:0.989:2	0/1:0,59:29:59:1.00:2	0/1:1,148:30:149:0.993:2	0/1:2,185:30:187:0.989:2	0/1:0,122:29:122:1.00:2	0/1:0,166:30:168:1.00:2
chr17	19741877	rs34670978	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,16:31:39:0.410:2	./.	./.	./.	./.	./.	./.
chr17	19812541	rs203462	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,23:31:60:0.383:2	0/1:15,22:30:37:0.595:2	./.	./.	./.	0/1:29,39:30:68:0.574:2	./.	./.	./.	0/1:18,27:30:45:0.600:2	0/1:37,35:30:72:0.486:2
chr17	19861458	rs2108978	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:72,69:32:141:0.489:2	0/1:43,29:32:72:0.403:2	./.	0/1:165,4:32:169:0.024:2	./.	0/1:86,86:31:172:0.500:2	./.	./.	./.	0/1:72,73:32:145:0.503:2	0/1:83,95:33:178:0.534:2
chr17	19999999	rs146091398	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,51:33:131:0.389:2	./.	./.
chr17	20013802	rs3764436	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,38:28:85:0.447:2	./.
chr17	20107773	rs2703805	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:32:10:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,53:32:53:1.00:2	./.	0/1:25,26:32:51:0.510:2	0/1:46,44:32:90:0.489:2	0/1:0,63:33:63:1.00:2	0/1:28,24:33:52:0.462:2	0/1:18,40:33:58:0.690:2
chr17	20108184	rs9908032	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,10:33:26:0.385:2	./.
chr17	20108239	rs2703806	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:31:6:1.00:2	0/1:2,29:31:31:0.935:2	0/1:0,17:31:17:1.00:2	0/1:20,10:30:30:0.333:2	0/1:9,8:31:17:0.471:2	0/1:18,8:32:26:0.308:2	0/1:0,13:33:13:1.00:2	0/1:0,17:32:17:1.00:2	0/1:15,11:32:26:0.423:2
chr17	20108977	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:32:35:0.114:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	20109189	rs2703807	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:30:2:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,5:31:5:1.00:2	./.	./.	0/1:4,4:32:8:0.500:2	0/1:0,7:32:7:1.00:2	0/1:2,4:30:6:0.667:2	./.
chr17	20135672	rs35835131	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,36:30:65:0.554:2	0/1:35,33:31:68:0.485:2	./.	./.	./.	./.
chr17	20163529	rs2703791	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:31:4:1.00:2	0/1:0,42:28:42:1.00:2	0/1:1,45:28:46:0.978:2	0/1:35,22:28:57:0.386:2	0/1:40,11:28:51:0.216:2	0/1:52,21:28:73:0.288:2	0/1:0,45:28:45:1.00:2	0/1:1,38:30:39:0.974:2	0/1:44,32:30:76:0.421:2
chr17	20217375	rs75296798	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,16:31:49:0.333:2	./.
chr17	20224794	.	A	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:78,9:33:87:0.103:2	0/1:48,4:33:52:0.077:2	./.	./.	0/1:101,6:29:107:0.056:2	0/1:129,16:32:145:0.110:2	0/1:107,18:32:126:0.144:2	./.	0/1:90,4:32:94:0.043:2	0/1:75,12:32:87:0.138:2	./.
chr17	20224797	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,4:31:105:0.038:2	0/1:106,5:30:111:0.045:2	./.	./.	./.	./.	./.	./.
chr17	20224854	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,6:27:116:0.052:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	20224931	.	T	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,4:32:105:0.038:2	0/1:63,5:32:68:0.074:2	./.	./.	./.	0/1:84,47:32:132:0.359:2	0/1:122,5:33:128:0.039:2	./.	0/1:123,12:33:135:0.089:2	0/1:99,4:33:103:0.039:2	./.
chr17	20227577	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,5:29:185:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	20321332	.	T	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,30:30:51:0.588:2	0/1:8,17:31:25:0.680:2	./.	./.	./.	0/1:47,11:31:58:0.190:2	0/1:26,7:31:33:0.212:2	0/1:62,12:31:74:0.162:2	./.	./.	0/1:52,13:31:65:0.200:2
chr17	20321540	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,93:31:191:0.487:2	./.	./.	./.
chr17	20321745	.	A	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:39,5:32:44:0.114:2	0/1:17,5:33:22:0.227:2	./.	./.	0/1:21,4:31:25:0.160:2	0/1:31,4:31:35:0.114:2	./.	./.	./.	./.	./.
chr17	20321757	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,7:30:46:0.152:2	./.	./.	./.
chr17	20321839	rs74784774	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,62:31:63:0.984:2	0/1:0,52:31:52:1.00:2	./.	./.	./.	0/1:34,21:31:55:0.382:2	./.	0/1:43,19:31:62:0.306:2	./.	./.	0/1:72,35:31:107:0.327:2
chr17	20321862	rs138613635	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,40:27:40:1.00:2	0/1:0,36:29:36:1.00:2	./.	0/1:195,4:32:199:0.020:2	./.	0/1:1,51:29:52:0.981:2	0/1:77,22:29:99:0.222:2	0/1:115,17:29:132:0.129:2	./.	0/1:122,14:32:136:0.103:2	0/1:156,22:25:178:0.124:2
chr17	20321883	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:32:191:0.021:2	./.	./.	./.	./.
chr17	20322051	rs2694184	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,97:32:116:0.836:2	0/1:14,64:31:78:0.821:2	./.	./.	./.	0/1:100,34:31:134:0.254:2	0/1:91,32:31:123:0.260:2	0/1:82,51:31:133:0.383:2	./.	./.	0/1:93,59:32:152:0.388:2
chr17	20322549	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,3:31:13:0.231:2
chr17	20353421	rs200390718	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,43:34:189:0.228:2	./.
chr17	20353422	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:137,5:27:142:0.035:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	20354815	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,24:32:190:0.126:2	./.	./.
chr17	20354836	rs150485558	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,157:32:161:0.981:2	0/1:0,110:32:110:1.00:2	./.	./.	./.	0/1:130,60:32:190:0.316:2	0/1:148,43:32:191:0.225:2	0/1:111,79:32:190:0.416:2	./.	./.	0/1:128,55:30:184:0.301:2
chr17	20355695	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:29:197:0.025:2	./.	./.	./.
chr17	20356347	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:9,3:34:12:0.250:2	./.	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2	./.	./.	./.
chr17	20356360	rs376358227	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:14,3:33:17:0.176:2	./.	./.	./.	./.	./.	./.	0/1:175,4:32:179:0.022:2	./.	./.	0/1:189,4:33:194:0.021:2
chr17	20356911	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,42:32:193:0.218:2	./.
chr17	20358694	rs375999029	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,4:34:17:0.235:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	20358702	rs144686973	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,10:33:194:0.052:2	0/1:179,5:30:185:0.027:2	0/1:174,7:31:182:0.039:2
chr17	20359942	rs199638744	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:67,29:31:96:0.302:2	0/1:142,41:32:183:0.224:2	./.	./.	./.	./.	0/1:171,18:33:189:0.095:2	0/1:161,32:32:193:0.166:2	0/1:132,42:30:174:0.241:2
chr17	20359952	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:64,25:31:91:0.281:2	0/1:154,36:32:190:0.189:2	./.	./.	./.	./.	0/1:171,25:32:196:0.128:2	0/1:157,33:31:190:0.174:2	0/1:134,44:31:178:0.247:2
chr17	20361512	rs372686364	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,67:31:195:0.344:2	./.	./.	./.	./.	./.
chr17	20363677	rs201248296	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:35,13:32:48:0.271:2	0/1:178,8:33:186:0.043:2	0/1:151,21:31:173:0.122:2	./.	./.	./.	0/1:188,9:33:197:0.046:2	0/1:181,12:33:193:0.062:2	0/1:178,13:31:191:0.068:2
chr17	20370735	rs4985833	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,34:27:62:0.548:2	0/1:10,13:26:23:0.565:2	0/1:1,3:27:4:0.750:2	0/1:40,25:28:65:0.385:2	0/1:52,42:27:95:0.447:2	0/1:33,46:27:79:0.582:2	0/1:53,47:28:100:0.470:2	0/1:56,53:28:109:0.486:2	0/1:30,40:29:70:0.571:2	0/1:72,25:32:97:0.258:2	0/1:24,28:29:52:0.538:2
chr17	20370767	rs4985834	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:38,15:30:54:0.283:2	0/1:12,5:29:17:0.294:2	./.	0/1:56,6:32:62:0.097:2	0/1:72,12:30:84:0.143:2	0/1:50,19:31:69:0.275:2	0/1:75,13:29:90:0.148:2	0/1:74,14:30:88:0.159:2	0/1:38,6:33:44:0.136:2	0/1:38,44:32:82:0.537:2	0/1:28,6:30:35:0.176:2
chr17	20370796	rs28699183	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,5:28:34:0.147:2	./.	./.	0/1:49,8:29:57:0.140:2	0/1:63,8:29:71:0.113:2	0/1:44,8:26:52:0.154:2	./.	0/1:61,6:29:67:0.090:2	./.	0/1:29,36:29:65:0.554:2	0/1:25,6:27:31:0.194:2
chr17	20370806	rs8080001	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,5:29:54:0.093:2	./.	./.	0/1:51,6:32:57:0.105:2	./.	./.	0/1:29,37:31:66:0.561:2	0/1:20,7:32:27:0.259:2
chr17	20483065	rs73981761	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:32:121:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	20483187	rs199771686	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,63:31:176:0.358:2	./.	./.	./.
chr17	20483760	.	C	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:73,12:31:85:0.141:2	0/1:44,5:32:49:0.102:2	./.	0/1:75,4:30:79:0.051:2	0/1:80,8:32:88:0.091:2	0/1:103,9:29:112:0.080:2	0/1:63,14:31:77:0.182:2	./.	0/1:48,5:32:53:0.094:2	./.	0/1:75,8:29:83:0.096:2
chr17	20769896	rs79843086	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,5:33:68:0.074:2
chr17	20796694	rs191643107	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:87,111:29:198:0.561:2	0/1:112,83:29:195:0.426:2	./.	./.	0/1:98,66:28:164:0.402:2	0/1:99,98:29:197:0.497:2	0/1:110,56:30:167:0.337:2	./.	./.	./.	./.
chr17	20798992	rs8073465	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:27,41:32:68:0.603:2	0/1:27,21:32:48:0.438:2	./.	./.	0/1:80,63:31:143:0.441:2	./.	0/1:92,54:31:146:0.370:2	./.	./.	./.	./.
chr17	20799045	.	C	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,14:30:174:0.080:2	0/1:131,8:29:140:0.058:2	./.	0/1:105,6:30:111:0.054:2	./.	./.
chr17	20799109	rs139379084	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,14:28:60:0.233:2	0/1:18,10:29:28:0.357:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	20799119	rs2279263	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,58:32:60:0.967:2	0/1:0,28:32:28:1.00:2	./.	0/1:93,41:32:134:0.306:2	0/1:2,74:32:76:0.974:2	0/1:1,85:32:86:0.988:2	0/1:0,68:31:69:1.00:2	./.	0/1:69,24:31:93:0.258:2	0/1:1,47:32:48:0.979:2	./.
chr17	20799194	rs9907420	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:31,20:31:51:0.392:2	0/1:23,13:30:36:0.361:2	./.	./.	./.	./.	0/1:40,17:32:57:0.298:2	./.	./.	0/1:32,25:31:57:0.439:2	./.
chr17	20911204	rs11541311	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,10:32:27:0.370:2	0/1:21,12:32:33:0.364:2	./.	0/1:27,23:32:52:0.460:2	0/1:33,22:32:55:0.400:2	./.	./.	0/1:66,25:32:91:0.275:2	0/1:49,28:32:77:0.364:2	./.	./.
chr17	20924523	rs2291037	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,134:31:136:0.985:2	0/1:2,66:31:68:0.971:2	0/1:5,10:32:15:0.667:2	0/1:78,67:31:145:0.462:2	0/1:3,107:31:110:0.973:2	0/1:85,47:31:132:0.356:2	0/1:61,57:31:118:0.483:2	0/1:2,152:32:154:0.987:2	0/1:0,156:32:156:1.00:2	0/1:1,118:32:119:0.992:2	0/1:89,76:31:165:0.461:2
chr17	21201719	rs8076154	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,10:31:36:0.278:2	0/1:22,14:32:36:0.389:2	./.	0/1:51,30:32:81:0.370:2	0/1:41,27:32:68:0.397:2	0/1:59,40:33:99:0.404:2	0/1:43,32:32:75:0.427:2	0/1:50,28:32:78:0.359:2	0/1:41,45:33:86:0.523:2	0/1:25,34:33:59:0.576:2	0/1:37,30:32:67:0.448:2
chr17	21202191	rs33911218	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,18:29:37:0.486:2	0/1:14,14:30:28:0.500:2	./.	0/1:35,18:28:54:0.340:2	0/1:34,10:27:44:0.227:2	0/1:35,13:28:48:0.271:2	0/1:21,12:24:33:0.364:2	0/1:40,27:29:68:0.403:2	0/1:41,31:29:72:0.431:2	0/1:24,17:30:41:0.415:2	0/1:44,18:27:63:0.290:2
chr17	21202237	rs36047035	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,13:31:25:0.520:2	0/1:21,7:32:28:0.250:2	./.	0/1:27,12:31:39:0.308:2	0/1:22,10:31:32:0.313:2	0/1:19,13:31:32:0.406:2	0/1:13,4:32:17:0.235:2	0/1:22,14:32:36:0.389:2	0/1:22,16:32:38:0.421:2	0/1:14,16:32:30:0.533:2	0/1:29,15:32:44:0.341:2
chr17	21203893	rs34105301	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:58,46:33:104:0.442:2	0/1:37,35:31:72:0.486:2	./.	0/1:83,44:32:129:0.346:2	0/1:115,18:32:133:0.135:2	0/1:94,53:32:147:0.361:2	0/1:97,52:31:149:0.349:2	0/1:117,46:32:163:0.282:2	0/1:92,37:32:129:0.287:2	0/1:71,21:31:92:0.228:2	0/1:63,50:32:113:0.442:2
chr17	21203907	rs73311539	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,3:27:12:0.250:2	0/1:117,11:28:128:0.086:2	0/1:107,11:30:118:0.093:2	./.	0/1:127,7:30:134:0.052:2	0/1:147,7:30:154:0.045:2	0/1:113,12:27:125:0.096:2	0/1:69,17:29:86:0.198:2	0/1:85,15:29:100:0.150:2
chr17	21203934	rs62057672	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:45,36:30:81:0.444:2	0/1:24,26:30:50:0.520:2	./.	0/1:59,37:30:96:0.385:2	0/1:74,4:29:78:0.051:2	0/1:78,33:29:111:0.297:2	0/1:68,35:29:103:0.340:2	0/1:84,37:30:121:0.306:2	0/1:71,25:29:96:0.260:2	0/1:47,4:30:51:0.078:2	0/1:42,26:29:68:0.382:2
chr17	21203949	rs62057673	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:38,28:31:66:0.424:2	0/1:21,18:32:39:0.462:2	./.	0/1:54,29:31:83:0.349:2	./.	0/1:66,32:31:98:0.327:2	0/1:56,26:32:82:0.317:2	0/1:58,32:31:90:0.356:2	0/1:62,16:30:78:0.205:2	./.	0/1:37,17:31:54:0.315:2
chr17	21204187	rs56067280	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,3:31:35:0.086:2	0/1:12,6:33:18:0.333:2	./.	0/1:58,4:32:62:0.065:2	0/1:90,15:31:105:0.143:2	0/1:44,12:32:56:0.214:2	0/1:60,6:30:66:0.091:2	0/1:62,6:31:68:0.088:2	0/1:48,5:32:53:0.094:2	./.	0/1:39,6:29:45:0.133:2
chr17	21204192	rs56216806	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,3:31:37:0.081:2	0/1:10,5:33:15:0.333:2	./.	0/1:61,5:32:66:0.076:2	0/1:93,13:31:106:0.123:2	0/1:44,12:32:56:0.214:2	0/1:60,6:23:67:0.091:2	0/1:67,5:31:72:0.069:2	0/1:54,4:33:58:0.069:2	./.	0/1:41,6:30:47:0.128:2
chr17	21204210	rs55796947	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,7:30:49:0.143:2	0/1:13,8:32:21:0.381:2	./.	0/1:72,8:31:80:0.100:2	0/1:110,15:29:125:0.120:2	0/1:61,14:30:75:0.187:2	0/1:80,6:28:86:0.070:2	0/1:75,8:29:83:0.096:2	0/1:60,5:31:65:0.077:2	./.	0/1:49,11:31:60:0.183:2
chr17	21204257	rs56166328	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:66,12:31:78:0.154:2	0/1:27,7:33:34:0.206:2	./.	0/1:112,9:32:122:0.074:2	0/1:140,4:31:144:0.028:2	0/1:101,20:31:121:0.165:2	0/1:154,9:30:163:0.055:2	0/1:98,16:31:114:0.140:2	./.	./.	0/1:56,9:31:65:0.138:2
chr17	21204266	rs2230435	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,42:32:78:0.538:2	0/1:12,21:32:33:0.636:2	0/1:6,3:33:9:0.333:2	0/1:116,8:32:124:0.065:2	0/1:71,72:32:143:0.503:2	0/1:109,20:32:129:0.155:2	0/1:163,9:30:172:0.052:2	0/1:98,16:31:114:0.140:2	0/1:53,30:31:83:0.361:2	0/1:45,38:32:83:0.458:2	0/1:32,39:31:71:0.549:2
chr17	21205460	rs62057721	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,30:31:52:0.577:2	0/1:12,13:30:25:0.520:2	./.	0/1:35,37:30:72:0.514:2	0/1:35,24:30:59:0.407:2	0/1:43,35:30:78:0.449:2	0/1:38,23:31:61:0.377:2	0/1:51,33:31:84:0.393:2	0/1:34,27:31:61:0.443:2	0/1:26,16:31:42:0.381:2	0/1:29,44:31:73:0.603:2
chr17	21206556	rs736103	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,30:32:44:0.682:2	0/1:4,15:32:19:0.789:2	0/1:1,2:32:3:0.667:2	0/1:22,25:31:47:0.532:2	0/1:23,25:31:48:0.521:2	0/1:31,20:32:51:0.392:2	0/1:17,19:31:36:0.528:2	0/1:40,22:31:62:0.355:2	0/1:7,27:32:34:0.794:2	0/1:21,13:32:34:0.382:2	0/1:21,12:32:33:0.364:2
chr17	21207813	rs74575904	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:146,20:32:166:0.120:2	./.	0/1:22,4:33:26:0.154:2	0/1:166,16:32:182:0.088:2	0/1:160,19:34:179:0.106:2	0/1:166,19:32:185:0.103:2	0/1:154,22:31:176:0.125:2	0/1:155,24:31:180:0.134:2	0/1:148,29:34:177:0.164:2	0/1:141,21:32:163:0.130:2	0/1:150,22:31:172:0.128:2
chr17	21207834	rs58609466	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,8:32:27:0.296:2	0/1:136,23:31:159:0.145:2	0/1:102,82:31:185:0.446:2	./.	0/1:138,36:32:174:0.207:2	0/1:146,32:30:178:0.180:2	0/1:120,47:33:168:0.281:2	0/1:96,48:32:144:0.333:2	0/1:123,27:33:151:0.180:2
chr17	21207835	rs76111309	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:127,23:31:150:0.153:2	./.	0/1:23,5:31:28:0.179:2	0/1:136,22:32:158:0.139:2	0/1:161,24:31:185:0.130:2	0/1:161,25:31:187:0.134:2	0/1:150,23:30:173:0.133:2	0/1:152,25:31:177:0.141:2	0/1:135,31:32:166:0.187:2	0/1:120,26:31:146:0.178:2	0/1:125,25:30:151:0.167:2
chr17	21207844	rs2230436	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:87,52:32:139:0.374:2	0/1:57,36:32:93:0.387:2	./.	0/1:122,34:32:156:0.218:2	./.	0/1:100,76:31:176:0.432:2	0/1:130,36:32:166:0.217:2	0/1:148,21:31:169:0.124:2	0/1:140,19:31:159:0.119:2	./.	0/1:121,24:30:145:0.166:2
chr17	21208413	rs1657695	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,14:31:49:0.286:2	0/1:16,8:32:24:0.333:2	./.	0/1:70,33:31:103:0.320:2	0/1:83,29:31:112:0.259:2	0/1:66,13:32:79:0.165:2	0/1:87,27:32:114:0.237:2	0/1:79,22:32:101:0.218:2	0/1:48,21:32:69:0.304:2	0/1:41,17:32:58:0.293:2	0/1:45,21:31:66:0.318:2
chr17	21208449	rs1657694	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,11:32:33:0.333:2	0/1:15,5:32:20:0.250:2	./.	0/1:57,25:31:82:0.305:2	0/1:43,23:31:66:0.348:2	0/1:41,10:31:51:0.196:2	0/1:57,16:32:73:0.219:2	0/1:62,13:28:75:0.173:2	0/1:34,13:33:47:0.277:2	0/1:30,13:30:43:0.302:2	0/1:31,15:31:46:0.326:2
chr17	21215483	rs55935757	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:45,15:32:60:0.250:2	0/1:26,9:31:35:0.257:2	./.	0/1:55,22:30:77:0.286:2	0/1:34,12:30:46:0.261:2	0/1:48,20:31:68:0.294:2	0/1:35,34:31:69:0.493:2	0/1:50,12:30:62:0.194:2	0/1:52,19:32:71:0.268:2	0/1:38,18:33:56:0.321:2	0/1:27,22:32:49:0.449:2
chr17	21215537	rs55736474	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,11:29:53:0.208:2	0/1:23,9:30:33:0.281:2	./.	0/1:48,18:31:67:0.273:2	0/1:56,17:29:73:0.233:2	0/1:53,18:30:71:0.254:2	0/1:34,28:30:62:0.452:2	0/1:59,12:29:71:0.169:2	0/1:50,8:27:58:0.138:2	0/1:53,22:29:75:0.293:2	0/1:33,21:29:54:0.389:2
chr17	21215552	rs56369732	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:38,10:31:48:0.208:2	0/1:25,10:32:35:0.286:2	./.	0/1:57,20:32:77:0.260:2	0/1:59,18:32:77:0.234:2	0/1:58,22:32:80:0.275:2	0/1:33,25:30:58:0.431:2	0/1:59,16:32:75:0.213:2	0/1:43,10:29:53:0.189:2	0/1:58,22:32:80:0.275:2	0/1:35,19:32:54:0.352:2
chr17	21215557	rs35206134	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:37,9:29:46:0.196:2	0/1:24,12:31:36:0.333:2	./.	0/1:58,19:30:77:0.247:2	0/1:69,19:31:88:0.216:2	0/1:63,20:31:83:0.241:2	0/1:38,28:30:66:0.424:2	0/1:60,16:31:76:0.211:2	0/1:42,11:28:53:0.208:2	0/1:60,19:31:79:0.241:2	0/1:38,16:30:54:0.296:2
chr17	21216788	rs1673840	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,16:28:36:0.444:2	0/1:15,14:31:29:0.483:2	./.	0/1:42,24:31:66:0.364:2	0/1:52,18:30:70:0.257:2	0/1:31,22:30:53:0.415:2	0/1:58,24:29:82:0.293:2	0/1:44,27:30:71:0.380:2	0/1:34,23:30:57:0.404:2	0/1:31,10:30:41:0.244:2	0/1:38,13:30:51:0.255:2
chr17	21216846	rs1657688	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,8:32:31:0.267:2	0/1:23,10:33:33:0.303:2	./.	0/1:43,22:33:65:0.338:2	0/1:57,12:32:69:0.174:2	0/1:33,18:32:51:0.353:2	0/1:52,21:33:73:0.288:2	0/1:41,37:32:78:0.474:2	0/1:43,18:35:61:0.295:2	0/1:29,15:34:44:0.341:2	0/1:31,19:32:50:0.380:2
chr17	21217513	rs2363198	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,14:32:57:0.246:2	0/1:28,13:32:41:0.317:2	./.	0/1:55,24:31:79:0.304:2	0/1:56,32:31:88:0.364:2	0/1:67,34:30:101:0.337:2	0/1:66,23:31:89:0.258:2	0/1:63,35:31:98:0.357:2	0/1:73,28:32:101:0.277:2	0/1:36,24:32:60:0.400:2	0/1:57,20:32:77:0.260:2
chr17	21217547	rs2363197	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,5:25:37:0.135:2	./.	./.	0/1:32,7:27:39:0.179:2	0/1:30,5:27:35:0.143:2	0/1:41,7:27:48:0.146:2	./.	0/1:36,6:32:42:0.143:2	0/1:44,5:28:49:0.102:2	0/1:21,8:31:29:0.276:2	0/1:35,9:27:44:0.205:2
chr17	21318663	rs72846666	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,5:33:7:0.714:2	0/1:4,4:31:8:0.500:2	./.	./.	0/1:4,5:32:9:0.556:2	0/1:7,8:32:15:0.533:2	./.	0/1:5,3:33:8:0.375:2	./.	0/1:7,5:32:12:0.417:2	0/1:4,7:32:11:0.636:2
chr17	21318698	rs1657738	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,6:32:23:0.261:2	0/1:13,10:32:23:0.435:2	./.	./.	0/1:10,8:30:18:0.444:2	0/1:27,4:32:31:0.129:2	./.	0/1:14,5:27:19:0.263:2	0/1:7,6:30:13:0.462:2	0/1:14,4:30:18:0.222:2	0/1:7,5:31:12:0.417:2
chr17	21318741	rs75113504	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,10:32:52:0.192:2	0/1:36,13:31:49:0.265:2	./.	./.	./.	0/1:33,39:29:72:0.542:2	./.	./.	./.	./.	0/1:31,4:32:35:0.114:2
chr17	21318760	rs74880280	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,10:29:64:0.156:2	0/1:43,14:31:57:0.246:2	./.	./.	./.	0/1:64,55:29:119:0.462:2	./.	./.	./.	./.	0/1:41,8:31:49:0.163:2
chr17	21318770	rs3752033	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,11:29:75:0.147:2	0/1:45,12:32:57:0.211:2	0/1:15,9:31:24:0.375:2	0/1:93,29:30:122:0.238:2	0/1:105,41:30:146:0.281:2	./.	./.	0/1:109,25:32:134:0.187:2	0/1:77,22:32:99:0.222:2	0/1:51,17:31:68:0.250:2	0/1:32,26:30:58:0.448:2
chr17	21318773	rs3752034	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,10:30:73:0.137:2	0/1:42,12:31:54:0.222:2	0/1:16,9:31:25:0.360:2	0/1:98,29:30:127:0.228:2	0/1:114,39:31:153:0.255:2	./.	./.	0/1:118,24:31:142:0.169:2	0/1:78,22:32:100:0.220:2	0/1:54,17:31:71:0.239:2	0/1:32,26:30:58:0.448:2
chr17	21318782	rs78117732	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,39:31:82:0.476:2	0/1:32,29:31:61:0.475:2	0/1:19,9:31:28:0.321:2	0/1:98,42:30:140:0.300:2	0/1:143,47:30:190:0.247:2	0/1:95,72:30:167:0.431:2	0/1:128,36:31:164:0.220:2	0/1:115,47:30:163:0.290:2	0/1:70,44:31:114:0.386:2	0/1:58,23:31:81:0.284:2	0/1:57,20:31:77:0.260:2
chr17	21318821	rs1714865	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:105,19:30:124:0.153:2	0/1:70,7:29:77:0.091:2	./.	0/1:159,34:32:193:0.176:2	0/1:177,19:32:196:0.097:2	0/1:126,56:32:182:0.308:2	0/1:134,62:31:196:0.316:2	./.	./.	0/1:123,15:32:138:0.109:2	./.
chr17	21318826	rs142399667	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:168,20:32:188:0.106:2	./.	./.	./.	./.	./.	./.	./.
chr17	21318867	rs73979893	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:104,55:29:159:0.346:2	0/1:56,28:31:84:0.333:2	0/1:35,8:31:43:0.186:2	0/1:143,41:30:184:0.223:2	0/1:144,50:30:194:0.258:2	0/1:121,66:30:187:0.353:2	0/1:140,47:29:187:0.251:2	0/1:139,44:30:183:0.240:2	0/1:129,55:31:184:0.299:2	0/1:141,37:31:178:0.208:2	0/1:128,54:30:182:0.297:2
chr17	21318897	rs1657739	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:95,45:32:140:0.321:2	0/1:51,22:32:73:0.301:2	0/1:29,10:33:39:0.256:2	0/1:98,62:33:160:0.388:2	0/1:113,61:32:174:0.351:2	0/1:103,65:33:168:0.387:2	0/1:111,60:33:171:0.351:2	0/1:113,63:32:176:0.358:2	0/1:103,53:33:156:0.340:2	0/1:101,64:33:165:0.388:2	0/1:78,64:32:142:0.451:2
chr17	21318912	rs35011501	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:117,14:31:131:0.107:2	0/1:66,5:32:71:0.070:2	0/1:27,4:31:31:0.129:2	0/1:160,8:30:168:0.048:2	./.	./.	0/1:148,16:30:164:0.098:2	0/1:153,16:30:169:0.095:2	0/1:112,27:31:139:0.194:2	./.	./.
chr17	21318918	rs79626424	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:92,28:31:120:0.233:2	0/1:54,13:32:67:0.194:2	0/1:23,6:31:29:0.207:2	0/1:146,18:31:164:0.110:2	0/1:132,24:30:156:0.154:2	0/1:115,37:30:153:0.243:2	0/1:129,27:30:157:0.173:2	0/1:142,27:30:169:0.160:2	0/1:107,19:32:126:0.151:2	0/1:119,17:31:136:0.125:2	0/1:106,24:32:130:0.185:2
chr17	21318952	rs8076599	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,30:30:75:0.400:2	0/1:17,16:30:33:0.485:2	0/1:5,6:28:11:0.545:2	0/1:71,53:29:124:0.427:2	0/1:43,26:30:69:0.377:2	0/1:38,49:31:88:0.563:2	0/1:50,31:30:81:0.383:2	0/1:55,40:30:95:0.421:2	0/1:42,44:31:86:0.512:2	0/1:38,39:30:77:0.506:2	0/1:36,30:30:66:0.455:2
chr17	21318969	rs79666990	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:72,7:32:79:0.089:2	0/1:35,5:32:40:0.125:2	./.	0/1:102,9:32:111:0.081:2	0/1:57,4:33:61:0.066:2	0/1:72,15:31:88:0.172:2	./.	0/1:75,5:33:80:0.063:2	0/1:73,4:30:77:0.052:2	0/1:64,7:32:71:0.099:2	0/1:56,9:32:65:0.138:2
chr17	21318981	rs9909970	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:68,11:32:79:0.139:2	0/1:36,7:30:43:0.163:2	./.	0/1:87,10:31:97:0.103:2	0/1:52,6:30:58:0.103:2	0/1:64,14:31:78:0.179:2	0/1:55,4:29:59:0.068:2	0/1:66,7:31:73:0.096:2	0/1:64,6:31:70:0.086:2	0/1:54,8:30:62:0.129:2	0/1:52,12:32:64:0.188:2
chr17	21319007	rs1657740	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,43:31:93:0.462:2	0/1:32,20:31:52:0.385:2	0/1:6,7:30:13:0.538:2	0/1:60,28:30:88:0.318:2	0/1:32,11:31:43:0.256:2	0/1:54,30:30:84:0.357:2	0/1:24,24:31:48:0.500:2	0/1:40,25:29:65:0.385:2	0/1:44,29:31:73:0.397:2	0/1:35,26:30:61:0.426:2	0/1:34,24:31:58:0.414:2
chr17	21319008	rs1657741	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,62:28:93:0.667:2	0/1:19,32:28:51:0.627:2	0/1:5,8:30:13:0.615:2	0/1:47,40:30:88:0.460:2	0/1:23,20:29:43:0.465:2	0/1:32,52:28:84:0.619:2	0/1:20,30:28:50:0.600:2	0/1:30,34:28:64:0.531:2	0/1:37,36:30:73:0.493:2	0/1:22,37:28:59:0.627:2	0/1:17,41:27:58:0.707:2
chr17	21319069	rs76265595	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:80,23:29:103:0.223:2	0/1:61,25:31:86:0.291:2	./.	0/1:113,7:27:120:0.058:2	0/1:104,7:25:111:0.063:2	0/1:100,24:30:124:0.194:2	0/1:85,7:31:92:0.076:2	0/1:82,13:29:95:0.137:2	./.	0/1:70,9:28:79:0.114:2	0/1:59,17:30:77:0.224:2
chr17	21319079	rs76518282	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:128,8:31:136:0.059:2	0/1:114,6:27:120:0.050:2	./.	0/1:86,8:33:94:0.085:2	0/1:86,17:29:103:0.165:2	./.	0/1:66,8:26:74:0.108:2	0/1:75,4:31:79:0.051:2
chr17	21319087	rs75029097	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:73,18:31:91:0.198:2	0/1:58,23:31:81:0.284:2	./.	0/1:130,7:32:137:0.051:2	0/1:116,5:31:121:0.041:2	0/1:102,31:31:133:0.233:2	0/1:82,8:30:90:0.089:2	0/1:88,16:30:104:0.154:2	./.	0/1:71,7:28:78:0.090:2	0/1:67,13:31:80:0.163:2
chr17	21319110	rs77283567	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:63,14:30:77:0.182:2	0/1:45,19:32:64:0.297:2	./.	0/1:114,8:31:122:0.066:2	0/1:119,7:32:126:0.056:2	0/1:95,26:31:121:0.215:2	0/1:88,8:34:96:0.083:2	0/1:80,9:31:89:0.101:2	./.	0/1:64,11:31:75:0.147:2	0/1:62,11:33:73:0.151:2
chr17	21319121	rs1714864	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,40:32:70:0.571:2	0/1:34,24:32:58:0.414:2	0/1:15,12:32:27:0.444:2	0/1:79,41:32:120:0.342:2	0/1:53,53:30:106:0.500:2	0/1:74,49:31:123:0.398:2	0/1:44,42:31:86:0.488:2	0/1:38,48:32:86:0.558:2	0/1:40,40:33:80:0.500:2	0/1:48,27:32:75:0.360:2	0/1:49,19:31:68:0.279:2
chr17	21319171	rs73313922	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,16:31:82:0.198:2	0/1:40,14:32:54:0.259:2	0/1:14,4:31:18:0.222:2	0/1:106,39:30:145:0.269:2	0/1:103,18:30:121:0.149:2	0/1:94,44:31:138:0.319:2	0/1:66,19:31:85:0.224:2	0/1:78,26:30:104:0.250:2	0/1:74,16:30:90:0.178:2	0/1:66,24:30:91:0.267:2	0/1:51,27:30:79:0.346:2
chr17	21319208	rs73979896	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:73,14:31:87:0.161:2	0/1:38,12:31:50:0.240:2	./.	0/1:95,38:30:133:0.286:2	0/1:91,13:29:104:0.125:2	0/1:97,43:30:140:0.307:2	0/1:58,15:29:73:0.205:2	0/1:82,25:28:107:0.234:2	0/1:72,17:30:89:0.191:2	0/1:57,20:29:77:0.260:2	0/1:41,26:32:67:0.388:2
chr17	21319230	rs1657742	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,33:30:77:0.429:2	0/1:30,17:32:47:0.362:2	./.	0/1:62,47:31:109:0.431:2	0/1:47,40:31:87:0.460:2	0/1:78,33:30:111:0.297:2	0/1:36,20:32:56:0.357:2	0/1:68,27:31:95:0.284:2	0/1:42,29:32:71:0.408:2	0/1:41,24:32:65:0.369:2	0/1:50,11:32:61:0.180:2
chr17	21319251	rs73313923	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:63,5:31:68:0.074:2	0/1:39,7:31:46:0.152:2	./.	0/1:72,10:32:82:0.122:2	./.	0/1:75,15:31:90:0.167:2	0/1:36,7:30:43:0.163:2	0/1:69,9:30:78:0.115:2	0/1:51,7:28:58:0.121:2	0/1:44,10:32:54:0.185:2	0/1:39,10:32:49:0.204:2
chr17	21319272	rs73313926	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,5:32:75:0.067:2	0/1:32,4:29:36:0.111:2	./.	0/1:49,3:33:52:0.058:2	0/1:35,3:33:38:0.079:2	0/1:39,3:33:42:0.071:2
chr17	21319285	rs72846667	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,7:32:74:0.095:2	./.	0/1:63,4:30:67:0.060:2	./.	./.	./.
chr17	21319302	rs1657743	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,30:31:50:0.600:2	0/1:6,24:31:31:0.800:2	./.	0/1:26,32:31:58:0.552:2	0/1:25,27:31:52:0.519:2	0/1:39,39:31:78:0.500:2	0/1:13,11:32:24:0.458:2	0/1:34,26:31:61:0.433:2	0/1:30,19:33:49:0.388:2	0/1:19,20:32:39:0.513:2	0/1:21,19:31:40:0.475:2
chr17	21319311	rs72846668	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,7:31:50:0.140:2	0/1:29,3:32:32:0.094:2	./.	0/1:57,4:28:61:0.066:2	0/1:55,5:30:60:0.083:2	0/1:72,17:29:89:0.191:2	0/1:24,8:28:32:0.250:2	0/1:58,9:27:67:0.134:2	./.	0/1:37,3:31:40:0.075:2	0/1:44,4:28:48:0.083:2
chr17	21319339	rs373382377	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,19:32:61:0.311:2	./.	./.
chr17	21319369	rs77048459	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:60,6:30:66:0.091:2	./.	./.	0/1:100,13:30:113:0.115:2	0/1:127,12:31:139:0.086:2	./.	0/1:92,15:29:107:0.140:2	0/1:96,16:30:112:0.143:2	0/1:62,5:28:67:0.075:2	0/1:66,13:31:79:0.165:2	0/1:76,6:30:82:0.073:2
chr17	21319392	rs73979899	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:69,11:30:80:0.138:2	0/1:45,7:31:52:0.135:2	./.	0/1:117,11:29:128:0.086:2	0/1:164,8:29:172:0.047:2	0/1:147,22:30:169:0.130:2	0/1:146,12:29:158:0.076:2	0/1:135,12:29:147:0.082:2	./.	0/1:87,12:28:99:0.121:2	0/1:85,15:28:100:0.150:2
chr17	21319399	rs4985866	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,13:32:79:0.165:2	0/1:42,12:31:54:0.222:2	0/1:10,13:32:23:0.565:2	0/1:101,30:32:131:0.229:2	0/1:124,51:31:175:0.291:2	./.	./.	0/1:121,32:31:153:0.209:2	0/1:47,43:31:90:0.478:2	0/1:89,11:31:100:0.110:2	0/1:67,39:32:106:0.368:2
chr17	21319407	rs16962951	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:127,8:31:135:0.059:2	0/1:171,6:32:177:0.034:2	./.	0/1:173,8:29:181:0.044:2	0/1:158,8:32:166:0.048:2	./.	0/1:99,8:29:109:0.075:2	./.
chr17	21319473	rs1657744	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,39:32:98:0.406:2	0/1:28,22:32:50:0.440:2	0/1:9,13:31:22:0.591:2	0/1:81,51:31:132:0.386:2	0/1:87,63:30:150:0.420:2	0/1:70,51:30:121:0.421:2	0/1:97,71:31:168:0.423:2	0/1:79,59:31:138:0.428:2	0/1:63,67:32:130:0.515:2	0/1:64,52:31:116:0.448:2	0/1:66,35:32:101:0.347:2
chr17	21319497	rs139358757	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,25:33:139:0.180:2	./.	./.	./.
chr17	21319543	rs80335301	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:142,13:32:156:0.084:2	./.	0/1:144,9:28:153:0.059:2	0/1:175,5:29:180:0.028:2	0/1:149,6:30:155:0.039:2	0/1:98,9:33:107:0.084:2	./.	./.
chr17	21319560	rs74801394	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:110,9:32:119:0.076:2	0/1:50,8:33:58:0.138:2	./.	0/1:144,21:30:165:0.127:2	0/1:174,8:31:182:0.044:2	0/1:139,19:31:158:0.120:2	0/1:163,13:29:176:0.074:2	0/1:152,16:31:168:0.095:2	0/1:109,19:31:128:0.148:2	0/1:117,8:31:125:0.064:2	0/1:113,10:31:123:0.081:2
chr17	21319682	rs80203231	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:64,21:31:85:0.247:2	0/1:37,9:31:46:0.196:2	./.	0/1:110,12:31:122:0.098:2	0/1:80,14:31:94:0.149:2	0/1:111,23:31:135:0.172:2	0/1:105,18:31:123:0.146:2	0/1:114,22:31:136:0.162:2	0/1:83,23:32:106:0.217:2	0/1:67,16:31:83:0.193:2	0/1:69,20:30:89:0.225:2
chr17	21319715	rs140886918	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,20:32:84:0.238:2	./.	./.	./.	./.	./.	./.	./.
chr17	21319716	rs78135255	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,8:30:54:0.148:2	0/1:34,7:30:41:0.171:2	./.	0/1:77,4:29:81:0.049:2	0/1:57,5:28:62:0.081:2	0/1:96,11:28:107:0.103:2	0/1:82,6:27:88:0.068:2	0/1:100,6:27:106:0.057:2	0/1:69,8:29:77:0.104:2	0/1:59,8:26:67:0.119:2	0/1:59,10:26:69:0.145:2
chr17	21319728	rs76681424	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:31,4:25:35:0.114:2	./.	./.	./.	0/1:93,8:30:101:0.079:2	./.	0/1:91,6:26:97:0.062:2	0/1:68,5:29:73:0.068:2	0/1:54,6:26:60:0.100:2	0/1:58,6:25:64:0.094:2
chr17	21319743	rs76267885	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:25,4:32:29:0.138:2	./.	0/1:67,5:32:72:0.069:2	./.	./.	./.	./.	./.	./.	./.
chr17	21319767	rs1612176	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:31:5:0.750:2	./.	./.	./.	./.	./.	./.	./.	0/1:28,17:31:47:0.378:2
chr17	21319785	rs1657745	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,17:30:48:0.354:2	0/1:10,7:31:17:0.412:2	./.	0/1:38,21:32:59:0.356:2	0/1:24,27:30:51:0.529:2	0/1:23,26:31:49:0.531:2	0/1:26,13:31:39:0.333:2	0/1:36,29:31:66:0.446:2	0/1:32,11:33:43:0.256:2	0/1:27,13:33:40:0.325:2	0/1:22,14:31:36:0.389:2
chr17	21319786	rs78547883	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,6:31:50:0.120:2	0/1:12,5:30:17:0.294:2	./.	0/1:52,8:30:60:0.133:2	0/1:43,7:31:50:0.140:2	0/1:44,6:30:50:0.120:2	0/1:36,4:32:40:0.100:2	0/1:60,6:31:66:0.091:2	0/1:35,7:31:42:0.167:2	0/1:32,7:32:40:0.179:2	./.
chr17	21319845	rs72846670	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:26,5:27:31:0.161:2	0/1:6,3:31:9:0.333:2	./.	./.	0/1:19,10:26:29:0.345:2	0/1:21,5:25:26:0.192:2	0/1:11,3:27:14:0.214:2	./.	0/1:13,6:28:19:0.316:2	0/1:17,7:27:24:0.292:2	./.
chr17	21319860	rs2917720	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,12:30:20:0.667:2	./.	./.	0/1:2,3:31:6:0.600:2
chr17	21319868	rs73979902	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,11:27:34:0.324:2	0/1:8,3:30:11:0.273:2	0/1:1,3:32:4:0.750:2	0/1:20,10:26:31:0.333:2	0/1:16,10:30:26:0.385:2	0/1:18,6:29:24:0.250:2	0/1:10,10:31:20:0.500:2	0/1:20,4:27:24:0.167:2	0/1:11,8:30:19:0.421:2	0/1:8,11:29:19:0.579:2	./.
chr17	21319908	rs66981137	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,12:30:34:0.353:2	0/1:15,8:31:23:0.348:2	0/1:1,4:31:5:0.800:2	0/1:24,18:29:42:0.429:2	0/1:20,13:26:33:0.394:2	0/1:23,11:30:34:0.324:2	0/1:16,18:28:34:0.529:2	0/1:18,12:30:31:0.400:2	0/1:10,14:30:24:0.583:2	0/1:16,13:31:29:0.448:2	0/1:15,4:30:19:0.211:2
chr17	21319943	rs5021699	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,11:28:39:0.282:2	0/1:21,11:32:32:0.344:2	./.	0/1:38,6:31:44:0.136:2	0/1:35,10:31:45:0.222:2	0/1:32,11:31:43:0.256:2	0/1:34,5:33:39:0.128:2	0/1:33,7:32:40:0.175:2	0/1:28,3:32:31:0.097:2	0/1:26,6:27:32:0.188:2	0/1:17,7:32:24:0.292:2
chr17	21319955	rs76506689	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,8:29:43:0.186:2	0/1:29,8:31:37:0.216:2	0/1:2,4:30:6:0.667:2	0/1:34,14:27:48:0.292:2	0/1:32,14:26:46:0.304:2	0/1:34,9:30:43:0.209:2	0/1:16,20:29:36:0.556:2	0/1:29,11:28:40:0.275:2	0/1:20,12:28:32:0.375:2	0/1:22,10:30:32:0.313:2	0/1:21,6:29:27:0.222:2
chr17	21319989	rs5021700	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,21:32:58:0.368:2	0/1:29,18:31:48:0.383:2	./.	./.
chr17	21319993	rs5021701	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,29:30:75:0.392:2	0/1:25,25:30:50:0.500:2	0/1:5,4:32:9:0.444:2	0/1:42,31:30:73:0.425:2	0/1:34,15:31:49:0.306:2	0/1:32,27:31:59:0.458:2	0/1:18,13:29:31:0.419:2	0/1:38,25:31:63:0.397:2	0/1:29,20:31:49:0.408:2	0/1:16,17:30:33:0.515:2	0/1:29,35:31:64:0.547:2
chr17	21320008	rs78435971	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:95,14:32:109:0.128:2	0/1:65,13:31:78:0.167:2	./.	0/1:97,19:30:116:0.164:2	0/1:61,14:29:75:0.187:2	0/1:82,22:30:104:0.212:2	0/1:48,5:30:53:0.094:2	0/1:94,7:30:101:0.069:2	0/1:82,9:27:91:0.099:2	0/1:61,11:29:72:0.153:2	0/1:98,25:30:123:0.203:2
chr17	21320012	rs77515828	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:99,20:31:119:0.168:2	0/1:72,16:32:88:0.182:2	./.	0/1:106,25:31:131:0.191:2	0/1:67,26:32:93:0.280:2	0/1:98,31:31:129:0.240:2	0/1:55,10:31:65:0.154:2	0/1:101,17:31:118:0.144:2	0/1:90,21:32:111:0.189:2	0/1:74,18:32:92:0.196:2	0/1:102,28:31:131:0.215:2
chr17	21320025	rs5021702	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:94,50:32:144:0.347:2	0/1:68,36:32:104:0.346:2	0/1:13,5:33:18:0.278:2	0/1:101,44:31:145:0.303:2	0/1:112,34:32:147:0.233:2	0/1:104,56:32:160:0.350:2	0/1:80,29:32:109:0.266:2	0/1:84,64:32:149:0.432:2	0/1:78,40:32:118:0.339:2	0/1:104,38:32:142:0.268:2	0/1:82,48:31:130:0.369:2
chr17	21320041	rs34808513	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:142,19:32:161:0.118:2	0/1:110,19:32:129:0.147:2	0/1:16,4:31:20:0.200:2	0/1:111,47:32:158:0.297:2	0/1:117,58:32:175:0.331:2	./.	0/1:122,47:32:169:0.278:2	0/1:128,27:32:155:0.174:2	0/1:101,29:33:130:0.223:2	0/1:101,49:32:150:0.327:2	0/1:134,13:28:147:0.088:2
chr17	21320102	rs5021703	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:107,41:32:148:0.277:2	0/1:107,36:33:143:0.252:2	./.	0/1:100,48:32:148:0.324:2	0/1:123,39:31:162:0.241:2	0/1:97,47:32:145:0.326:2	0/1:133,34:31:167:0.204:2	0/1:97,43:31:140:0.307:2	0/1:102,33:32:135:0.244:2	0/1:116,41:32:157:0.261:2	0/1:116,35:32:151:0.232:2
chr17	21320114	rs5021704	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,32:29:123:0.260:2	0/1:92,25:31:117:0.214:2	0/1:22,3:32:25:0.120:2	0/1:103,47:31:150:0.313:2	0/1:94,27:31:122:0.223:2	0/1:73,33:31:106:0.311:2	0/1:107,27:31:134:0.201:2	0/1:83,30:31:113:0.265:2	0/1:103,29:31:132:0.220:2	0/1:83,21:30:105:0.202:2	0/1:115,39:32:154:0.253:2
chr17	21320197	rs79945769	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:54,18:27:72:0.250:2	0/1:18,7:27:25:0.280:2	./.	0/1:38,14:28:52:0.269:2	0/1:29,12:27:41:0.293:2	0/1:23,13:28:36:0.361:2	0/1:16,8:27:24:0.333:2	0/1:22,7:25:29:0.241:2	0/1:30,14:25:44:0.318:2	0/1:32,10:26:42:0.238:2	0/1:34,15:26:49:0.306:2
chr17	21320210	rs62049520	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,13:31:57:0.228:2	0/1:15,5:31:20:0.250:2	./.	0/1:39,6:31:45:0.133:2	0/1:27,10:31:37:0.270:2	0/1:23,7:30:30:0.233:2	0/1:16,4:31:20:0.200:2	0/1:25,3:32:28:0.107:2	0/1:27,9:32:36:0.250:2	0/1:32,4:33:36:0.111:2	0/1:24,5:32:29:0.172:2
chr17	21320212	rs5021705	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,33:32:59:0.559:2	0/1:9,8:31:17:0.471:2	./.	0/1:24,21:32:45:0.467:2	0/1:22,12:29:35:0.353:2	0/1:11,17:32:28:0.607:2	0/1:10,8:31:18:0.444:2	0/1:18,12:31:30:0.400:2	0/1:17,18:33:35:0.514:2	0/1:24,12:31:36:0.333:2	0/1:15,13:32:28:0.464:2
chr17	21320252	rs62049521	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,14:32:42:0.333:2	0/1:21,5:31:26:0.192:2	./.	0/1:34,10:32:44:0.227:2	0/1:43,13:32:56:0.232:2	0/1:38,23:31:61:0.377:2	0/1:20,12:30:32:0.375:2	0/1:38,6:32:44:0.136:2	0/1:30,7:34:37:0.189:2	0/1:34,7:33:41:0.171:2	0/1:32,7:33:39:0.179:2
chr17	21320263	rs5021706	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,8:31:38:0.211:2	0/1:24,7:30:31:0.226:2	0/1:6,3:33:9:0.333:2	0/1:43,13:33:56:0.232:2	0/1:53,16:31:69:0.232:2	0/1:48,19:32:67:0.284:2	0/1:33,12:33:45:0.267:2	0/1:34,14:31:48:0.292:2	0/1:31,10:33:41:0.244:2	0/1:34,8:33:42:0.190:2	0/1:32,12:32:44:0.273:2
chr17	21320279	rs73313932	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,18:31:46:0.391:2	0/1:29,10:32:39:0.256:2	./.	0/1:47,19:30:66:0.288:2	0/1:57,21:31:78:0.269:2	0/1:45,28:31:73:0.384:2	0/1:26,25:31:51:0.490:2	0/1:46,9:31:55:0.164:2	0/1:36,15:32:51:0.294:2	0/1:39,14:31:53:0.264:2	0/1:43,15:32:59:0.259:2
chr17	21320350	rs11364334	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,9:31:38:0.237:2	0/1:24,7:32:31:0.226:2	0/1:1,2:33:3:0.667:2	0/1:46,16:31:62:0.258:2	0/1:40,11:32:51:0.216:2	0/1:43,24:31:67:0.358:2	0/1:21,17:31:38:0.447:2	0/1:41,12:32:53:0.226:2	0/1:33,15:32:48:0.313:2	0/1:29,18:32:47:0.383:2	0/1:44,16:31:60:0.267:2
chr17	21320365	rs62049522	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,15:28:31:0.484:2	0/1:13,11:27:24:0.458:2	./.	0/1:32,9:28:41:0.220:2	0/1:21,11:26:32:0.344:2	0/1:41,12:27:53:0.226:2	./.	0/1:28,13:27:41:0.317:2	0/1:27,13:30:40:0.325:2	0/1:27,10:28:37:0.270:2	0/1:30,14:25:44:0.318:2
chr17	21320405	rs201692849	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,3:32:11:0.273:2	./.	0/1:6,3:29:9:0.333:2
chr17	21320499	rs73313941	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,4:33:15:0.267:2	./.	./.	./.	./.	0/1:21,4:29:25:0.160:2	0/1:31,3:33:34:0.088:2	0/1:24,5:32:29:0.172:2	./.	./.	./.
chr17	21320529	rs67680166	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,4:32:34:0.118:2	./.	./.	./.
chr17	21320681	rs78556043	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,4:31:28:0.143:2	0/1:26,4:33:30:0.133:2	0/1:28,6:33:34:0.176:2	./.	0/1:35,7:32:42:0.167:2	0/1:34,3:35:37:0.081:2	0/1:36,5:33:41:0.122:2	0/1:50,7:33:57:0.123:2
chr17	21320690	rs76283231	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,5:34:47:0.106:2	./.	./.	0/1:25,8:32:33:0.242:2	0/1:31,6:31:37:0.162:2	0/1:30,7:31:37:0.189:2	./.	0/1:38,11:32:49:0.224:2	0/1:35,6:33:41:0.146:2	0/1:35,10:32:45:0.222:2	0/1:48,18:32:66:0.273:2
chr17	21320699	rs72842113	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,15:31:57:0.263:2	0/1:26,6:32:32:0.188:2	./.	0/1:30,10:29:40:0.250:2	0/1:28,7:28:35:0.200:2	0/1:31,12:29:43:0.279:2	0/1:31,5:29:36:0.139:2	0/1:38,18:27:56:0.321:2	0/1:35,14:30:49:0.286:2	0/1:41,12:30:53:0.226:2	0/1:55,22:28:77:0.286:2
chr17	21320711	rs74883261	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:52,11:32:63:0.175:2	./.	./.	0/1:46,6:33:52:0.115:2	./.	0/1:48,8:32:56:0.143:2	0/1:38,6:30:44:0.136:2	0/1:54,8:31:62:0.129:2	0/1:62,8:32:70:0.114:2	0/1:54,7:30:61:0.115:2	0/1:84,8:31:92:0.087:2
chr17	21320787	rs76105604	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:133,24:30:157:0.153:2	0/1:100,21:31:121:0.174:2	0/1:26,6:30:32:0.188:2	0/1:134,27:31:161:0.168:2	0/1:145,23:30:168:0.137:2	0/1:140,8:33:148:0.054:2	0/1:133,32:30:165:0.194:2	0/1:136,28:31:164:0.171:2	0/1:134,17:32:151:0.113:2	0/1:128,30:30:158:0.190:2	0/1:131,19:32:150:0.127:2
chr17	21320796	rs73981233	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:90,57:32:147:0.388:2	0/1:68,48:32:116:0.414:2	0/1:19,14:30:33:0.424:2	0/1:81,66:31:147:0.449:2	0/1:106,61:31:167:0.365:2	0/1:93,42:31:135:0.311:2	0/1:96,66:31:162:0.407:2	0/1:89,64:32:153:0.418:2	0/1:94,46:32:140:0.329:2	0/1:86,66:31:153:0.434:2	0/1:86,55:32:141:0.390:2
chr17	21320798	rs73981234	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:92,58:31:150:0.387:2	0/1:70,47:31:117:0.402:2	0/1:19,14:30:33:0.424:2	0/1:85,66:31:151:0.437:2	0/1:107,59:30:166:0.355:2	0/1:97,42:31:139:0.302:2	0/1:97,66:30:163:0.405:2	0/1:93,64:31:157:0.408:2	0/1:95,46:31:141:0.326:2	0/1:85,67:31:152:0.441:2	0/1:86,54:31:140:0.386:2
chr17	21320824	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,11:30:147:0.075:2	./.	./.	./.	./.	./.
chr17	21320826	rs76498462	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:96,31:31:127:0.244:2	0/1:94,28:31:122:0.230:2	0/1:28,10:31:38:0.263:2	0/1:113,38:31:151:0.252:2	0/1:132,34:31:166:0.205:2	0/1:112,30:30:142:0.211:2	0/1:134,24:31:158:0.152:2	0/1:99,34:31:133:0.256:2	0/1:92,27:31:119:0.227:2	0/1:116,33:30:149:0.221:2	0/1:117,30:31:147:0.204:2
chr17	21320855	rs76059352	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,9:32:109:0.083:2	0/1:114,12:29:126:0.095:2	./.	0/1:88,8:32:96:0.083:2	0/1:105,8:31:113:0.071:2	./.	0/1:91,19:32:110:0.173:2	0/1:129,8:31:137:0.058:2
chr17	21320867	rs76852423	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,7:32:80:0.088:2	0/1:73,7:32:80:0.088:2	0/1:22,3:31:25:0.120:2	0/1:100,10:31:110:0.091:2	0/1:85,16:29:101:0.158:2	0/1:110,21:31:131:0.160:2	0/1:89,13:32:102:0.127:2	0/1:104,11:30:115:0.096:2	./.	0/1:90,24:31:114:0.211:2	0/1:122,14:32:136:0.103:2
chr17	21320882	rs72842114	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,26:32:84:0.310:2	0/1:52,25:32:77:0.325:2	0/1:14,7:33:21:0.333:2	0/1:81,36:32:117:0.308:2	0/1:56,49:31:105:0.467:2	0/1:85,33:33:118:0.280:2	0/1:78,25:32:103:0.243:2	0/1:74,50:31:124:0.403:2	0/1:65,30:32:95:0.316:2	0/1:67,43:31:110:0.391:2	0/1:110,40:31:150:0.267:2
chr17	21320884	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,5:29:107:0.047:2	./.	./.	./.	./.
chr17	21320890	rs80028685	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,14:31:88:0.159:2	0/1:59,13:32:72:0.181:2	0/1:14,4:32:18:0.222:2	0/1:107,19:29:126:0.151:2	0/1:89,23:32:112:0.205:2	0/1:116,6:31:122:0.049:2	./.	0/1:97,28:32:125:0.224:2	0/1:74,26:32:100:0.260:2	0/1:109,14:32:123:0.114:2	0/1:128,24:30:152:0.158:2
chr17	21320896	rs35676232	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,5:29:125:0.040:2	0/1:110,7:30:117:0.060:2	./.	./.	./.	./.
chr17	21320916	rs73313944	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,31:33:75:0.413:2	0/1:32,35:32:67:0.522:2	0/1:12,7:30:19:0.368:2	0/1:68,37:30:106:0.352:2	0/1:46,49:31:95:0.516:2	0/1:67,39:32:106:0.368:2	0/1:66,32:32:98:0.327:2	0/1:67,46:32:113:0.407:2	0/1:43,39:31:82:0.476:2	0/1:56,39:31:95:0.411:2	0/1:76,40:31:116:0.345:2
chr17	21320980	rs73313947	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,18:31:42:0.429:2	0/1:20,15:30:35:0.429:2	0/1:6,3:29:9:0.333:2	0/1:30,20:30:50:0.400:2	0/1:30,20:29:50:0.400:2	0/1:29,22:30:51:0.431:2	0/1:37,22:28:59:0.373:2	0/1:27,22:30:49:0.449:2	0/1:27,25:31:52:0.481:2	0/1:23,22:31:45:0.489:2	0/1:29,20:28:49:0.408:2
chr17	21320993	rs72842115	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,11:32:25:0.440:2	0/1:13,7:32:20:0.350:2	./.	0/1:24,10:31:34:0.294:2	0/1:22,10:29:32:0.313:2	0/1:28,8:31:36:0.222:2	0/1:30,12:30:42:0.286:2	0/1:17,14:32:31:0.452:2	0/1:22,14:31:36:0.389:2	0/1:15,7:31:22:0.318:2	0/1:20,11:32:32:0.355:2
chr17	21321016	rs72842117	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,7:33:19:0.368:2	0/1:19,5:27:24:0.208:2	0/1:20,3:30:23:0.130:2	0/1:21,5:24:26:0.192:2	0/1:13,4:26:17:0.235:2	0/1:22,6:28:28:0.214:2	./.	0/1:15,5:31:20:0.250:2
chr17	21321050	rs72842121	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,5:32:19:0.263:2	./.	./.	0/1:10,3:29:13:0.231:2	0/1:16,7:28:23:0.304:2	0/1:12,7:31:19:0.368:2	0/1:23,5:26:28:0.179:2	0/1:12,5:30:17:0.294:2	0/1:18,6:28:24:0.250:2	0/1:7,4:31:11:0.364:2	0/1:11,4:25:15:0.267:2
chr17	21321052	rs72842122	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,5:26:19:0.263:2	./.	./.	0/1:9,3:29:12:0.250:2	0/1:17,7:27:24:0.292:2	0/1:11,7:28:18:0.389:2	./.	0/1:12,5:22:17:0.294:2	0/1:16,6:27:22:0.273:2	0/1:7,4:26:11:0.364:2	0/1:11,4:26:15:0.267:2
chr17	21321064	rs78581302	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:9,4:31:13:0.308:2	./.	0/1:19,9:29:28:0.321:2	0/1:29,8:33:37:0.216:2	./.	0/1:35,7:28:42:0.167:2	0/1:27,7:32:34:0.206:2	0/1:26,5:29:31:0.161:2	0/1:16,7:27:23:0.304:2	0/1:18,5:26:23:0.217:2
chr17	21321104	rs73313949	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,43:31:64:0.672:2	0/1:13,19:31:32:0.594:2	0/1:2,11:31:13:0.846:2	0/1:13,53:30:66:0.803:2	0/1:27,48:30:75:0.640:2	0/1:29,31:30:60:0.517:2	0/1:32,39:32:71:0.549:2	0/1:24,56:30:80:0.700:2	0/1:20,40:32:60:0.667:2	0/1:12,44:31:56:0.786:2	0/1:19,40:31:59:0.678:2
chr17	21321145	rs73313952	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,37:30:97:0.381:2	0/1:33,22:31:55:0.400:2	0/1:10,12:30:22:0.545:2	0/1:76,52:29:128:0.406:2	0/1:82,35:27:117:0.299:2	0/1:73,30:29:103:0.291:2	0/1:79,33:30:112:0.295:2	0/1:88,41:29:129:0.318:2	0/1:83,40:30:123:0.325:2	0/1:61,34:30:95:0.358:2	0/1:43,35:29:78:0.449:2
chr17	21321173	rs73313955	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,53:28:131:0.405:2	0/1:42,22:27:64:0.344:2	0/1:13,8:29:21:0.381:2	0/1:92,70:27:162:0.432:2	0/1:87,40:27:127:0.315:2	0/1:82,43:27:125:0.344:2	0/1:76,45:28:121:0.372:2	0/1:107,55:28:162:0.340:2	0/1:92,41:29:133:0.308:2	0/1:76,50:27:126:0.397:2	0/1:54,51:27:105:0.486:2
chr17	21321207	rs73313957	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,57:32:144:0.396:2	0/1:37,28:32:65:0.431:2	0/1:12,5:32:17:0.294:2	0/1:120,67:31:187:0.358:2	0/1:103,63:31:166:0.380:2	0/1:126,64:31:190:0.337:2	0/1:116,46:31:162:0.284:2	0/1:123,67:31:190:0.353:2	0/1:105,52:32:157:0.331:2	0/1:98,53:31:151:0.351:2	0/1:91,39:30:130:0.300:2
chr17	21321250	rs201500562	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,58:30:81:0.716:2	0/1:10,25:32:35:0.714:2	0/1:3,5:31:8:0.625:2	0/1:31,85:31:116:0.733:2	0/1:31,77:30:108:0.713:2	0/1:44,85:31:129:0.659:2	0/1:47,65:31:112:0.580:2	0/1:48,73:31:121:0.603:2	0/1:41,48:30:89:0.539:2	0/1:23,59:31:82:0.720:2	0/1:36,64:30:100:0.640:2
chr17	21321252	rs77231477	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:54,27:29:81:0.333:2	0/1:26,9:34:35:0.257:2	./.	0/1:87,31:30:118:0.263:2	0/1:77,30:30:107:0.280:2	0/1:94,37:31:131:0.282:2	0/1:87,23:30:111:0.209:2	0/1:85,35:30:120:0.292:2	0/1:68,21:29:89:0.236:2	0/1:63,17:32:80:0.213:2	0/1:80,18:32:98:0.184:2
chr17	21321955	rs4360986	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,45:32:46:0.978:2	0/1:8,17:32:25:0.680:2	./.	0/1:17,9:30:26:0.346:2	./.	./.	0/1:13,22:33:35:0.629:2	./.
chr17	21322022	rs146748587	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,22:30:68:0.324:2	./.	./.	./.
chr17	21322838	rs77580257	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:96,21:32:117:0.179:2	0/1:108,27:31:135:0.200:2	0/1:82,12:32:94:0.128:2	0/1:125,24:30:149:0.161:2	0/1:145,12:30:157:0.076:2	0/1:129,23:31:152:0.151:2	0/1:157,11:30:168:0.065:2	0/1:147,14:32:161:0.087:2	0/1:108,19:31:127:0.150:2	0/1:118,20:30:138:0.145:2	0/1:98,20:30:118:0.169:2
chr17	21322847	rs73313962	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:110,11:32:121:0.091:2	0/1:112,27:32:139:0.194:2	0/1:92,5:31:97:0.052:2	0/1:147,10:31:157:0.064:2	0/1:149,14:31:163:0.086:2	0/1:150,10:31:160:0.063:2	0/1:161,13:32:175:0.075:2	0/1:142,23:31:165:0.139:2	0/1:119,7:31:126:0.056:2	0/1:135,7:29:142:0.049:2	./.
chr17	21322880	rs79110818	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,48:29:135:0.356:2	0/1:72,70:31:142:0.493:2	0/1:70,19:28:89:0.213:2	0/1:105,49:32:155:0.318:2	0/1:124,40:32:166:0.244:2	0/1:113,59:33:172:0.343:2	0/1:124,52:33:176:0.295:2	0/1:113,52:33:166:0.315:2	0/1:90,41:33:131:0.313:2	0/1:98,46:31:145:0.319:2	0/1:89,41:32:131:0.315:2
chr17	21322883	rs78171447	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:94,46:31:140:0.329:2	0/1:74,71:31:146:0.490:2	0/1:69,19:30:88:0.216:2	0/1:109,48:30:157:0.306:2	0/1:127,41:30:168:0.244:2	0/1:112,59:30:171:0.345:2	0/1:127,52:32:179:0.291:2	0/1:117,51:31:168:0.304:2	0/1:92,42:31:134:0.313:2	0/1:100,46:31:146:0.315:2	0/1:89,43:30:132:0.326:2
chr17	21322902	rs201124602	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,5:26:127:0.039:2
chr17	21322933	rs73313965	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:129,9:30:138:0.065:2	0/1:89,18:31:107:0.168:2	./.	0/1:112,9:29:121:0.074:2	0/1:135,9:30:144:0.063:2	0/1:127,25:30:152:0.164:2	0/1:141,22:30:163:0.135:2	0/1:123,17:31:140:0.121:2	./.	0/1:125,12:31:137:0.088:2	./.
chr17	21322972	rs72842124	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:68,21:30:89:0.236:2	0/1:56,13:29:69:0.188:2	0/1:14,4:30:18:0.222:2	0/1:56,15:31:71:0.211:2	0/1:75,16:27:91:0.176:2	0/1:72,27:30:99:0.273:2	0/1:65,16:28:81:0.198:2	0/1:65,14:31:80:0.177:2	0/1:56,9:30:65:0.138:2	0/1:61,17:29:78:0.218:2	0/1:53,13:28:66:0.197:2
chr17	21322973	rs72842125	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:67,20:27:87:0.230:2	0/1:54,13:26:67:0.194:2	0/1:14,4:26:18:0.222:2	0/1:55,15:26:70:0.214:2	0/1:75,16:23:91:0.176:2	0/1:70,28:26:98:0.286:2	0/1:63,16:25:79:0.203:2	0/1:61,14:26:75:0.187:2	0/1:56,8:27:64:0.125:2	0/1:59,17:25:76:0.224:2	0/1:53,13:24:66:0.197:2
chr17	21322975	rs77556672	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,14:30:87:0.161:2	0/1:60,6:29:66:0.091:2	0/1:14,3:29:17:0.176:2	0/1:57,11:28:68:0.162:2	0/1:79,9:28:88:0.102:2	0/1:83,13:27:96:0.135:2	0/1:72,6:32:78:0.077:2	0/1:68,7:30:75:0.093:2	0/1:57,7:30:64:0.109:2	0/1:65,11:28:76:0.145:2	0/1:54,12:26:66:0.182:2
chr17	21323001	rs66506990	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:54,6:24:60:0.100:2	0/1:42,6:30:48:0.125:2	./.	./.	0/1:41,5:25:46:0.109:2	0/1:46,5:27:51:0.098:2	./.	0/1:34,6:23:41:0.150:2	0/1:34,4:29:38:0.105:2	./.	0/1:44,10:18:54:0.185:2
chr17	21323033	rs72842126	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,5:29:41:0.122:2	./.	./.	./.	./.	0/1:32,10:29:42:0.238:2	./.	0/1:18,5:24:23:0.217:2	./.	./.	0/1:36,8:30:44:0.182:2
chr17	21323034	rs72842128	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,5:31:38:0.132:2	./.	./.	./.	./.	0/1:34,10:27:44:0.227:2	./.	0/1:19,5:25:24:0.208:2	./.	./.	0/1:35,8:28:43:0.186:2
chr17	21323049	rs75724776	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,11:32:45:0.244:2	./.	./.	0/1:29,4:29:33:0.121:2	0/1:25,11:30:37:0.306:2	0/1:26,6:31:32:0.188:2	0/1:29,6:32:35:0.171:2	0/1:57,4:33:61:0.066:2
chr17	21323096	rs73981250	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,21:32:65:0.323:2	0/1:25,12:32:37:0.324:2	0/1:10,5:30:15:0.333:2	0/1:50,24:32:74:0.324:2	0/1:44,7:31:51:0.137:2	0/1:58,37:31:95:0.389:2	0/1:31,18:31:49:0.367:2	0/1:48,26:31:74:0.351:2	0/1:52,23:31:76:0.307:2	0/1:44,17:30:61:0.279:2	0/1:59,42:32:101:0.416:2
chr17	21323107	rs73981251	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,21:33:67:0.313:2	0/1:27,13:32:40:0.325:2	0/1:12,5:31:17:0.294:2	0/1:55,34:33:89:0.382:2	0/1:46,13:31:59:0.220:2	0/1:57,37:32:94:0.394:2	0/1:37,22:33:59:0.373:2	0/1:50,32:32:82:0.390:2	0/1:61,27:33:88:0.307:2	0/1:53,24:32:78:0.312:2	0/1:70,52:32:122:0.426:2
chr17	21825565	rs12453514	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,92:30:157:0.586:2	./.	./.	0/1:70,52:31:122:0.426:2	0/1:41,49:31:90:0.544:2	0/1:48,34:30:82:0.415:2	./.
chr17	21826174	rs199666173	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,29:32:63:0.460:2
chr17	21826256	rs9989450	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,23:31:58:0.397:2	0/1:32,33:29:65:0.508:2	./.	0/1:31,21:30:52:0.404:2	0/1:31,18:30:49:0.367:2	0/1:34,10:29:44:0.227:2	./.
chr17	25628820	rs6561	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:44,38:32:82:0.463:2	0/1:24,24:32:48:0.500:2	0/1:5,5:33:10:0.500:2	./.	./.	./.	0/1:0,35:32:35:1.00:2	0/1:59,35:32:94:0.372:2	0/1:46,39:33:85:0.459:2	./.	0/1:70,55:33:126:0.440:2
chr17	25909816	rs2293180	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,20:28:45:0.444:2	./.	./.	./.	0/1:38,19:32:57:0.333:2	0/1:16,21:30:37:0.568:2	./.
chr17	25909850	rs2293181	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:29:43:1.00:2	0/1:1,35:28:36:0.972:2	0/1:0,11:29:11:1.00:2	0/1:31,28:28:59:0.475:2	./.	0/1:0,79:28:80:1.00:2	0/1:2,46:29:48:0.958:2	0/1:0,51:28:51:1.00:2	0/1:28,41:30:69:0.594:2	./.	0/1:0,31:29:31:1.00:2
chr17	25928455	rs118139250	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:66,55:32:121:0.455:2	0/1:32,26:32:58:0.448:2	./.	./.	./.	./.	0/1:50,70:31:120:0.583:2	./.	./.	./.	./.
chr17	25931718	rs55646895	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,16:32:68:0.235:2	./.	./.
chr17	25932816	rs55938675	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,47:30:104:0.452:2	./.	./.	./.	./.
chr17	25958304	rs3751093	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,17:31:49:0.347:2	./.	./.	./.	./.	0/1:58,39:32:97:0.402:2	./.
chr17	25968049	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,6:32:58:0.103:2	./.	./.	./.	./.	./.	./.
chr17	25969288	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,6:31:195:0.031:2	./.
chr17	25969296	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:182,6:27:188:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr17	25969306	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:179,5:31:184:0.027:2	./.	./.	./.	./.	0/1:186,4:33:190:0.021:2	0/1:185,6:33:191:0.031:2	./.
chr17	25970557	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,7:31:47:0.149:2	./.	./.	0/1:154,22:30:176:0.125:2	./.	./.	./.	./.	./.
chr17	25970633	rs361497	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,80:32:158:0.506:2	./.	0/1:165,4:33:169:0.024:2	./.	0/1:88,91:32:179:0.508:2	0/1:89,88:32:178:0.497:2	./.
chr17	25970642	rs361498	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,15:30:29:0.517:2	0/1:89,89:31:178:0.500:2	./.	0/1:106,84:31:190:0.442:2	./.	./.	./.	./.	0/1:86,84:30:171:0.494:2
chr17	25972311	rs2304886	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:128,63:31:191:0.330:2	./.	0/1:141,52:30:193:0.269:2	0/1:134,59:30:193:0.306:2	./.	./.	0/1:136,45:31:181:0.249:2
chr17	25972942	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2	./.	./.	./.	./.
chr17	25973604	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,30:9:156:0.195:2	0/1:129,29:10:159:0.184:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	25973608	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:179,5:32:184:0.027:2	./.	0/1:169,10:32:179:0.056:2	./.	0/1:184,6:31:190:0.032:2	./.	./.
chr17	25974081	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:191,5:29:196:0.026:2	./.	./.	./.	./.	./.	./.
chr17	25974110	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:174,7:28:182:0.039:2	./.	./.	./.	./.	./.	./.
chr17	26089867	rs1060826	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,38:30:38:1.00:2	0/1:0,13:30:13:1.00:2	./.	./.	0/1:0,43:29:43:1.00:2	0/1:20,13:28:33:0.394:2	0/1:0,50:29:50:1.00:2	0/1:0,39:31:39:1.00:2	0/1:17,23:31:40:0.575:2	0/1:0,36:30:36:1.00:2	0/1:15,17:31:32:0.531:2
chr17	26092631	rs1060822	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,47:33:47:1.00:2	0/1:0,31:32:31:1.00:2	0/1:4,6:33:10:0.600:2	./.	0/1:0,63:31:63:1.00:2	0/1:47,27:32:74:0.365:2	0/1:0,73:32:73:1.00:2	0/1:0,59:32:59:1.00:2	0/1:37,18:32:55:0.327:2	0/1:0,64:32:64:1.00:2	0/1:15,26:33:42:0.634:2
chr17	26096597	rs2297518	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:49,47:32:96:0.490:2	0/1:32,30:32:62:0.484:2	./.	./.	0/1:50,27:32:77:0.351:2	./.	0/1:53,18:32:72:0.254:2	0/1:51,47:32:98:0.480:2	0/1:78,66:33:144:0.458:2	0/1:64,47:31:111:0.423:2	./.
chr17	26105932	rs1137933	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:30,26:30:57:0.464:2	0/1:18,19:32:37:0.514:2	./.	./.	0/1:20,21:31:41:0.512:2	./.	0/1:47,28:31:75:0.373:2	0/1:47,38:32:85:0.447:2	0/1:32,34:32:66:0.515:2	0/1:29,29:32:58:0.500:2	./.
chr17	26109102	rs3730017	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	0/1:23,24:32:47:0.511:2	./.	./.	./.	./.	./.
chr17	26115949	rs16966563	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:30:9:0.444:2	./.	./.	0/1:32,19:28:51:0.373:2	./.	./.	./.	./.	./.
chr17	26519204	rs3182380	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,32:30:64:0.500:2	./.	./.	./.	./.	./.	./.
chr17	26633155	rs241778	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,51:32:91:0.560:2	0/1:49,35:31:84:0.417:2	./.	./.	./.	./.	./.	./.
chr17	26646380	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:31:100:0.040:2	./.	./.	./.	./.
chr17	26676135	rs13469	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,42:31:71:0.592:2	0/1:19,18:31:37:0.486:2	0/1:0,14:31:14:1.00:2	0/1:50,39:31:89:0.438:2	0/1:52,74:31:126:0.587:2	0/1:69,44:31:113:0.389:2	0/1:70,75:31:145:0.517:2	0/1:57,45:32:102:0.441:2	0/1:51,44:31:95:0.463:2	0/1:49,38:32:87:0.437:2	0/1:0,70:32:70:1.00:2
chr17	26684392	rs55887815	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:35:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr17	26686416	rs11538927	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,25:31:59:0.424:2	0/1:22,19:32:41:0.463:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	26691321	rs9910163	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:28:37:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,7:30:7:1.00:2	0/1:25,22:30:47:0.468:2	0/1:44,24:28:68:0.353:2	0/1:0,70:29:70:1.00:2	0/1:1,93:29:94:0.989:2	0/1:44,48:29:92:0.522:2	0/1:0,57:29:57:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,43:28:43:1.00:2
chr17	26691916	rs2277667	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,34:33:74:0.459:2	0/1:24,17:32:41:0.415:2	./.	./.	./.	0/1:74,46:32:120:0.383:2	./.	./.	./.	./.	./.
chr17	26694483	rs2227728	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,62:32:105:0.590:2	0/1:37,35:32:72:0.486:2	./.	./.	./.	0/1:84,93:33:177:0.525:2	./.	./.	./.	./.	./.
chr17	26694861	rs704	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:32:6:1.00:2	0/1:37,37:30:74:0.500:2	0/1:35,27:31:62:0.435:2	0/1:33,30:31:63:0.476:2	./.	0/1:35,34:31:69:0.493:2	0/1:36,32:32:68:0.471:2	0/1:22,20:33:42:0.476:2	0/1:0,56:31:56:1.00:2
chr17	26699121	rs7212814	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	0/1:0,2:31:2:1.00:2	./.	./.	./.
chr17	26708300	rs71373645	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,117:28:117:1.00:2	0/1:0,81:28:81:1.00:2	0/1:0,37:29:37:1.00:2	0/1:0,136:28:136:1.00:2	0/1:0,141:28:141:1.00:2	0/1:0,118:28:118:1.00:2	0/1:0,139:28:140:1.00:2	0/1:0,123:28:123:1.00:2	0/1:0,122:28:122:1.00:2	0/1:0,143:28:143:1.00:2	0/1:0,99:27:99:1.00:2
chr17	26708302	rs71373646	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,118:31:118:1.00:2	0/1:0,81:31:81:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,136:31:136:1.00:2	0/1:0,142:30:142:1.00:2	0/1:0,119:30:119:1.00:2	0/1:0,140:31:140:1.00:2	0/1:0,124:31:124:1.00:2	0/1:0,124:30:124:1.00:2	0/1:0,143:30:143:1.00:2	0/1:0,99:31:99:1.00:2
chr17	26708304	rs71373647	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,118:32:118:1.00:2	0/1:0,81:31:81:1.00:2	0/1:0,37:32:37:1.00:2	0/1:1,136:32:137:0.993:2	0/1:0,141:31:141:1.00:2	0/1:0,119:31:119:1.00:2	0/1:2,138:32:140:0.986:2	0/1:0,124:32:124:1.00:2	0/1:0,125:32:125:1.00:2	0/1:0,142:31:142:1.00:2	0/1:0,102:31:102:1.00:2
chr17	26708550	rs11658194	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,16:31:16:1.00:2	0/1:0,20:29:20:1.00:2	./.	0/1:0,57:30:57:1.00:2	0/1:1,58:29:59:0.983:2	0/1:0,37:29:37:1.00:2	0/1:0,36:29:37:1.00:2	0/1:0,60:29:60:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,29:29:29:1.00:2
chr17	26708551	rs11652384	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,16:30:16:1.00:2	0/1:0,20:29:20:1.00:2	./.	0/1:0,59:29:59:1.00:2	0/1:1,59:29:60:0.983:2	0/1:0,36:28:36:1.00:2	0/1:0,35:29:36:1.00:2	0/1:0,60:28:60:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,31:29:31:1.00:2	0/1:0,30:28:30:1.00:2
chr17	26732980	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:29:56:0.071:2	./.	./.
chr17	26816250	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.	./.	./.	./.
chr17	26817537	rs11568466	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,33:32:73:0.452:2	0/1:42,24:32:66:0.364:2	./.	./.	./.	./.	./.	./.	0/1:49,57:33:106:0.538:2	./.	0/1:50,49:32:99:0.495:2
chr17	26818530	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:32:95:0.042:2	./.	./.	./.
chr17	26820673	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:141,5:33:146:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr17	26824156	rs11567842	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,49:31:120:0.408:2	0/1:33,33:32:66:0.500:2	./.	./.	./.	0/1:81,72:32:153:0.471:2	0/1:105,93:32:198:0.470:2	0/1:111,83:31:194:0.428:2	0/1:81,77:32:158:0.487:2	./.	0/1:1,162:31:164:0.994:2
chr17	26850999	.	A	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,19:8:63:0.302:2	0/1:67,26:9:93:0.280:2	0/1:66,26:9:92:0.283:2	./.	0/1:64,28:8:92:0.304:2	0/1:39,17:9:57:0.304:2	0/1:45,16:9:61:0.262:2	./.
chr17	26856206	rs200819879	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,19:10:117:0.164:2	./.	./.
chr17	26864302	rs532648	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,43:32:73:0.589:2	0/1:25,25:32:50:0.500:2	./.	./.	./.	0/1:55,45:32:100:0.450:2	0/1:50,30:31:80:0.375:2	0/1:65,80:31:145:0.552:2	0/1:48,42:31:90:0.467:2	./.	0/1:0,70:31:70:1.00:2
chr17	26874314	rs2070139	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,11:28:17:0.647:2	0/1:1,95:31:96:0.990:2	0/1:0,147:31:147:1.00:2	./.	0/1:77,49:31:126:0.389:2	./.	./.	./.	./.
chr17	26875677	rs145710399	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,31:33:65:0.477:2	./.	./.	./.	./.	./.
chr17	26900817	rs145671545	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,31:31:76:0.408:2	./.	./.	./.	./.
chr17	26901571	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:31:140:0.029:2	./.
chr17	26919310	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:33:54:0.074:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	26919894	rs34977204	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,41:31:79:0.519:2	./.	0/1:55,43:31:98:0.439:2	./.	./.	0/1:88,58:31:147:0.397:2
chr17	26939313	rs141557268	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,51:32:117:0.436:2	./.	./.	./.	./.	./.	./.
chr17	26955330	rs12602520	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,60:31:159:0.377:2	0/1:55,45:31:100:0.450:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	26960988	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:32:94:0.043:2
chr17	26965001	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:30:81:0.049:2	./.	./.	./.	./.	./.
chr17	27004835	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:33:36:0.111:2	./.
chr17	27008974	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:29:67:0.061:2	./.
chr17	27009749	rs12051648	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:31:10:0.500:2	0/1:0,88:31:88:1.00:2	0/1:4,90:31:94:0.957:2	0/1:120,4:31:124:0.032:2	0/1:70,38:31:108:0.352:2	0/1:64,31:31:95:0.326:2	0/1:54,47:31:102:0.465:2	0/1:49,43:31:92:0.467:2	./.
chr17	27010404	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:33:12:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	27014396	rs28753762	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,16:31:55:0.291:2	0/1:16,12:31:28:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	27014483	rs28588628	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,14:30:34:0.412:2	0/1:11,4:26:15:0.267:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	27024656	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:34:148:0.027:2	./.	./.	./.	./.
chr17	27031774	rs138077899	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:32:10:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	27042999	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:29:62:0.065:2	./.
chr17	27052358	rs2288595	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,45:27:87:0.529:2	0/1:49,31:31:81:0.388:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	27064408	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:33:86:0.047:2	./.	./.	./.	./.
chr17	27064863	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,8:14:35:0.229:2	./.
chr17	27065211	rs3809797	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,94:30:186:0.508:2	0/1:63,43:30:107:0.406:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	27067540	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:32:139:0.029:2
chr17	27067844	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,5:31:109:0.046:2	./.	./.	./.	./.
chr17	27075423	rs2070265	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:36,34:32:70:0.486:2	0/1:27,20:31:47:0.426:2	0/1:9,3:30:12:0.250:2	./.	./.	0/1:69,38:30:107:0.355:2	./.	0/1:77,65:31:142:0.458:2	0/1:36,42:32:78:0.538:2	0/1:39,30:31:69:0.435:2	0/1:0,68:31:68:1.00:2
chr17	27085564	rs2043031	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:26:7:0.429:2	./.	./.	./.	./.	0/1:6,4:27:10:0.400:2	./.	0/1:7,5:25:12:0.417:2	0/1:1,3:30:4:0.750:2	0/1:6,3:28:9:0.333:2	0/1:0,4:30:4:1.00:2
chr17	27182086	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:99,4:29:103:0.039:2	./.	./.	./.	./.	./.	./.
chr17	27185827	rs2242345	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,20:32:41:0.488:2	0/1:14,17:31:31:0.548:2	0/1:9,5:28:14:0.357:2	0/1:0,82:31:82:1.00:2	0/1:0,72:30:72:1.00:2	0/1:45,36:31:81:0.444:2	0/1:0,77:32:77:1.00:2	0/1:46,31:32:77:0.403:2	0/1:46,29:33:75:0.387:2	0/1:36,22:32:58:0.379:2	./.
chr17	27188567	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:30:101:0.040:2	./.	./.
chr17	27207571	rs1060244	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,46:30:46:1.00:2	0/1:0,26:31:26:1.00:2	./.	0/1:49,39:29:88:0.443:2	./.	0/1:46,42:30:89:0.477:2	0/1:39,46:30:85:0.541:2	./.	./.	./.	./.
chr17	27225586	rs4795472	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,34:31:58:0.586:2	0/1:0,45:29:45:1.00:2	./.	0/1:29,22:31:51:0.431:2	./.	./.	./.	./.
chr17	27228198	rs4795474	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,59:32:119:0.496:2	0/1:49,61:31:110:0.555:2
chr17	27228513	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,3:33:54:0.056:2	./.	./.
chr17	27238135	rs148347485	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,74:32:175:0.423:2	./.
chr17	27239655	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:31:168:0.024:2
chr17	27284443	rs12941884	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,29:27:51:0.569:2	0/1:36,24:28:60:0.400:2
chr17	27284519	rs377403555	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,3:33:35:0.086:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	27286750	rs9907950	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:31:6:0.500:2	0/1:31,25:29:56:0.446:2	0/1:1,36:29:37:0.973:2	./.	0/1:38,34:30:72:0.472:2	./.	./.	./.	./.
chr17	27286851	rs1976165	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,33:29:69:0.478:2	0/1:4,61:28:65:0.938:2	0/1:64,42:29:106:0.396:2	0/1:54,40:28:94:0.426:2	./.	./.	0/1:36,29:30:65:0.446:2	0/1:32,24:27:56:0.429:2
chr17	27287563	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:32:116:0.034:2	./.	./.
chr17	27287931	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:34:86:0.047:2	./.	./.	./.	./.	./.
chr17	27287984	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,13:30:36:0.361:2	./.
chr17	27379000	rs78322452	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,13:31:51:0.255:2	./.	./.	./.	./.	./.
chr17	27379998	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:30:136:0.029:2
chr17	27380002	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:33:125:0.032:2	./.	./.
chr17	27381621	rs146599491	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,93:31:198:0.470:2	./.	./.	./.	./.
chr17	27401511	rs11539071	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,21:31:52:0.404:2	0/1:1,46:30:47:0.979:2	0/1:33,24:28:57:0.421:2
chr17	27402473	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:31:134:0.030:2	./.	./.	./.
chr17	27422053	rs2320786	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:27,22:31:49:0.449:2	0/1:9,13:32:22:0.591:2	0/1:0,3:33:3:1.00:2	./.	./.	0/1:0,70:31:70:1.00:2	./.	0/1:49,37:32:86:0.430:2	./.	./.	0/1:28,33:31:61:0.541:2
chr17	27424239	.	A	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,10:25:63:0.159:2	0/1:34,4:26:38:0.105:2	0/1:42,7:20:49:0.143:2	0/1:38,9:22:47:0.191:2	0/1:30,9:25:39:0.231:2	./.	./.
chr17	27424316	rs8067806	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,24:32:46:0.522:2	0/1:16,8:32:24:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	27425854	rs76590796	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,38:33:101:0.376:2	0/1:34,10:32:44:0.227:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	27434181	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,5:25:100:0.050:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	27438469	rs8076604	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:40,51:29:91:0.560:2	0/1:15,19:29:34:0.559:2	0/1:4,6:29:10:0.600:2	./.	0/1:107,7:29:114:0.061:2	0/1:37,62:30:99:0.626:2	./.	0/1:49,50:29:99:0.505:2	0/1:62,48:30:110:0.436:2	0/1:33,41:29:74:0.554:2	0/1:72,56:29:129:0.438:2
chr17	27441077	rs12601535	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:12,9:32:21:0.429:2	0/1:3,7:32:10:0.700:2	0/1:3,3:33:6:0.500:2	./.	./.	0/1:0,30:32:30:1.00:2	./.	0/1:32,29:32:61:0.475:2	0/1:17,22:33:39:0.564:2	0/1:1,29:31:30:0.967:2	0/1:0,47:33:47:1.00:2
chr17	27442710	rs28587908	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,14:31:25:0.560:2	0/1:26,27:30:53:0.509:2
chr17	27493935	rs35771220	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,20:30:55:0.364:2	0/1:20,13:30:33:0.394:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	27580756	rs1047790	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,26:30:50:0.520:2	0/1:14,16:31:30:0.533:2	./.	./.	./.	0/1:22,20:30:42:0.476:2	./.	./.	./.	0/1:12,20:31:32:0.625:2	0/1:25,22:30:47:0.468:2
chr17	27613677	rs12452857	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,22:32:61:0.361:2	0/1:36,38:32:74:0.514:2	0/1:33,31:32:64:0.484:2	./.	./.
chr17	27807416	rs56387760	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,45:30:81:0.556:2	./.	./.
chr17	27816686	rs9897675	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,17:33:53:0.321:2	./.	./.	./.	./.	./.
chr17	27835138	rs508706	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:31:38:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,44:31:44:1.00:2	0/1:1,34:31:35:0.971:2	0/1:2,70:31:72:0.972:2
chr17	27844593	rs75790207	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,8:30:24:0.333:2
chr17	27869968	rs507577	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,142:32:143:0.993:2	0/1:1,61:32:62:0.984:2	0/1:0,19:32:19:1.00:2	0/1:113,81:32:194:0.418:2	0/1:2,189:32:191:0.990:2	0/1:87,108:31:195:0.554:2	0/1:105,91:31:196:0.464:2	0/1:105,89:32:194:0.459:2	0/1:96,92:32:188:0.489:2	0/1:71,63:31:134:0.470:2	0/1:88,100:32:188:0.532:2
chr17	27889578	rs539307	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:8,11:31:19:0.579:2	0/1:6,5:32:11:0.455:2	./.	0/1:13,10:30:23:0.435:2	./.	0/1:0,26:31:26:1.00:2	./.	0/1:0,30:32:30:1.00:2	0/1:13,10:33:23:0.435:2	0/1:9,4:33:13:0.308:2	0/1:0,37:32:37:1.00:2
chr17	27889643	rs62070804	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,14:32:33:0.424:2	./.	./.	./.	./.
chr17	27889963	rs721479	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,24:32:61:0.393:2	./.	0/1:0,87:32:87:1.00:2	0/1:38,34:33:72:0.472:2	./.	0/1:37,27:31:64:0.422:2
chr17	27889986	rs542939	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,34:32:51:0.667:2	0/1:28,32:32:60:0.533:2	0/1:0,41:32:41:1.00:2	0/1:0,65:33:65:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,45:32:46:1.00:2	0/1:20,23:33:43:0.535:2	0/1:24,21:33:46:0.467:2
chr17	27893169	rs147908255	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,17:31:37:0.459:2	./.	./.	./.	./.
chr17	27893893	rs62070806	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr17	27899635	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,3:33:51:0.059:2	./.	./.
chr17	27901903	rs11548560	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,3:29:8:0.375:2	./.
chr17	27903973	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,4:32:22:0.182:2	./.	./.	./.	./.	./.	./.
chr17	27904711	rs11080105	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:44,32:33:77:0.421:2	0/1:18,12:33:30:0.400:2	./.	0/1:67,54:32:121:0.446:2	./.	./.	./.	0/1:75,67:33:142:0.472:2	0/1:76,46:33:122:0.377:2	0/1:51,50:33:101:0.495:2	0/1:61,46:31:107:0.430:2
chr17	27910537	rs147244911	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,51:30:93:0.548:2	./.	./.	./.
chr17	27945979	rs61732667	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,40:31:97:0.412:2	./.	./.	./.	./.
chr17	27949768	rs9890056	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,17:30:44:0.386:2	./.	./.	./.	./.	./.
chr17	27959903	rs2289629	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:25,18:32:43:0.419:2	0/1:13,17:32:30:0.567:2	./.	./.	0/1:27,15:29:42:0.357:2	0/1:22,15:31:37:0.405:2	./.	0/1:23,15:32:38:0.395:2	0/1:40,39:32:79:0.494:2	0/1:20,20:30:40:0.500:2	0/1:41,37:31:78:0.474:2
chr17	27963141	rs61737983	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,50:33:87:0.575:2	./.
chr17	28011639	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:34:139:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	28268800	rs4567782	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:42,29:31:73:0.408:2	0/1:35,34:31:69:0.493:2	./.	0/1:63,53:32:116:0.457:2	./.	./.	0/1:0,47:32:47:1.00:2	0/1:43,35:32:78:0.449:2	./.	0/1:33,31:31:64:0.484:2	./.
chr17	28268817	rs79556405	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,35:30:67:0.522:2	./.	./.	./.	./.
chr17	28296222	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,25:32:57:0.446:2	./.	./.
chr17	28296327	rs9897794	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:32,25:33:57:0.439:2	0/1:24,18:32:42:0.429:2	./.	0/1:26,27:32:53:0.509:2	./.	./.	0/1:3,74:31:77:0.961:2	0/1:69,44:32:113:0.389:2	./.	0/1:25,32:32:57:0.561:2	./.
chr17	28320248	rs4795524	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,6:30:6:1.00:2	0/1:36,25:31:61:0.410:2	0/1:28,20:30:48:0.417:2	0/1:0,81:31:81:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,116:32:116:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,83:32:83:1.00:2
chr17	28380655	rs9900546	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,39:31:77:0.506:2	./.	./.	./.	./.
chr17	28380801	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:33:166:0.024:2	./.	./.	./.	./.
chr17	28381081	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:32:109:0.037:2	./.	./.	./.	./.	./.
chr17	28381141	rs4074170	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,57:30:139:0.410:2	0/1:38,36:30:74:0.486:2	0/1:0,18:29:18:1.00:2	0/1:90,95:30:185:0.514:2	0/1:1,83:30:84:0.988:2	0/1:0,135:30:135:1.00:2	0/1:64,53:30:117:0.453:2	0/1:61,79:30:141:0.564:2	0/1:1,174:31:175:0.994:2	0/1:59,58:29:117:0.496:2	0/1:2,172:30:174:0.989:2
chr17	28407876	rs7221743	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,43:30:88:0.489:2	0/1:31,33:32:64:0.516:2	0/1:0,13:32:13:1.00:2	0/1:40,54:32:94:0.574:2	0/1:0,87:31:87:1.00:2	0/1:0,99:31:99:1.00:2	0/1:36,27:31:63:0.429:2	0/1:44,47:32:91:0.516:2	0/1:0,94:33:94:1.00:2	0/1:35,51:32:86:0.593:2	0/1:0,102:32:102:1.00:2
chr17	28443834	rs28573959	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,21:31:75:0.280:2	./.	./.	./.	./.	./.
chr17	28444183	rs6505162	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:8,4:34:12:0.333:2	0/1:7,12:30:19:0.632:2	./.	0/1:14,13:32:27:0.481:2	./.	./.	0/1:0,24:32:24:1.00:2	0/1:28,23:31:51:0.451:2	./.	0/1:9,20:32:29:0.690:2	./.
chr17	28445105	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:30:77:0.052:2
chr17	28445137	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:31:100:0.040:2
chr17	28505174	rs11544945	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,64:28:133:0.481:2	./.	0/1:52,46:30:98:0.469:2	./.	./.	0/1:106,71:30:177:0.401:2
chr17	28511765	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:31:129:0.031:2	0/1:66,6:33:72:0.083:2	./.
chr17	28511978	rs1979572	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:36,36:32:72:0.500:2	0/1:21,18:32:39:0.462:2	./.	0/1:46,29:32:75:0.387:2	./.	./.	0/1:74,40:31:114:0.351:2	0/1:49,37:31:86:0.430:2	./.	0/1:37,25:32:62:0.403:2	./.
chr17	28512405	rs117582579	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,22:32:28:0.786:2	./.	./.	./.	./.	./.	./.
chr17	28539802	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:35:63:0.063:2	./.	./.
chr17	28576076	rs1050565	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:42,28:33:70:0.400:2	0/1:37,21:32:58:0.362:2	./.	./.	0/1:75,55:32:130:0.423:2	0/1:81,48:31:129:0.372:2	./.	0/1:59,57:31:116:0.491:2	./.	./.	0/1:56,47:32:103:0.456:2
chr17	28576173	rs193008106	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,39:30:82:0.476:2	./.	./.	./.	./.	./.	./.	./.
chr17	28601087	rs200660785	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,10:17:94:0.106:2	0/1:134,11:15:145:0.076:2
chr17	28612448	rs7342921	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:44,49:31:93:0.527:2	0/1:25,29:30:54:0.537:2	./.	./.	0/1:33,39:29:73:0.542:2	0/1:40,43:30:83:0.518:2	./.	0/1:61,63:29:124:0.508:2	./.	./.	0/1:47,52:31:99:0.525:2
chr17	28749764	rs117331885	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,13:31:35:0.382:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	28789406	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:34:196:0.020:2	./.	./.
chr17	28849348	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,14:12:63:0.222:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,26:8:118:0.222:2
chr17	28887134	rs111780165	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,86:32:192:0.448:2	./.
chr17	28887148	rs200596738	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:181,9:31:190:0.047:2	0/1:119,6:31:125:0.048:2	./.	./.	0/1:170,25:31:195:0.128:2	0/1:189,9:31:198:0.045:2	0/1:191,9:31:200:0.045:2	./.	./.	0/1:177,22:32:199:0.111:2	./.
chr17	28887667	rs78888987	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:79,12:32:91:0.132:2	0/1:28,4:30:32:0.125:2	0/1:9,3:32:12:0.250:2	0/1:83,13:32:96:0.135:2	0/1:81,17:32:98:0.173:2	0/1:61,12:31:73:0.164:2	0/1:92,12:32:104:0.115:2	./.	./.	0/1:76,4:32:80:0.050:2	./.
chr17	28887714	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:78,4:33:82:0.049:2	0/1:34,3:33:37:0.081:2	./.	0/1:91,6:32:97:0.062:2	0/1:96,4:31:100:0.040:2	./.	./.	./.	./.	./.	./.
chr17	28887730	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:33,3:32:36:0.083:2	./.	0/1:76,4:32:80:0.050:2	./.	./.	./.	./.	./.	./.	./.
chr17	28890301	rs80145926	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:65,5:32:70:0.071:2	./.	./.	0/1:62,6:31:68:0.088:2	./.	./.	0/1:66,6:31:72:0.083:2	./.	./.	./.	./.
chr17	28890361	rs372824382	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:150,6:32:156:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr17	28900708	rs3764416	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,43:29:76:0.566:2	0/1:16,31:31:47:0.660:2	./.	0/1:65,44:28:109:0.404:2	0/1:3,176:29:179:0.983:2	0/1:50,60:30:110:0.545:2	0/1:3,183:30:186:0.984:2	0/1:77,70:29:147:0.476:2	0/1:0,91:30:91:1.00:2	0/1:0,101:30:101:1.00:2	0/1:40,32:30:72:0.444:2
chr17	29111368	rs11867457	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,36:33:79:0.456:2	0/1:20,26:32:46:0.565:2	./.	0/1:48,58:32:106:0.547:2	0/1:42,9:32:51:0.176:2	./.	./.	./.	./.	./.	0/1:57,60:33:117:0.513:2
chr17	29113016	rs34756112	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,14:32:41:0.341:2	0/1:13,14:32:27:0.519:2	0/1:0,5:32:5:1.00:2	0/1:39,37:32:76:0.487:2	./.	./.	./.	./.	./.	./.	0/1:37,45:32:82:0.549:2
chr17	29119490	rs141972436	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,18:32:51:0.353:2	./.	./.	./.	./.
chr17	29123188	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,5:31:122:0.041:2	./.	./.	./.	./.	./.
chr17	29123193	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,5:31:139:0.036:2	./.	./.	./.	./.	./.
chr17	29123217	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,5:32:164:0.030:2	./.	./.	./.	./.	./.
chr17	29123342	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:33:102:0.039:2
chr17	29159404	rs999796	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,7:33:9:0.778:2	0/1:35,31:33:66:0.470:2	./.	0/1:38,32:32:70:0.457:2	./.	./.	./.	./.	0/1:31,35:32:66:0.530:2
chr17	29161202	rs9910051	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:32:10:0.500:2	0/1:38,23:32:61:0.377:2	./.	0/1:31,28:31:59:0.475:2	./.	./.	./.	./.	0/1:44,52:31:96:0.542:2
chr17	29161358	rs3816780	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,41:31:61:0.672:2	./.	./.	./.	./.	./.	./.	0/1:53,41:32:94:0.436:2
chr17	29161503	rs11080134	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,6:30:14:0.429:2	0/1:3,5:32:8:0.625:2	./.	0/1:1,7:33:8:0.875:2	./.	0/1:4,5:33:9:0.556:2	./.
chr17	29161845	rs17826219	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:32:7:0.429:2	0/1:34,18:32:52:0.346:2	./.	./.	./.	./.	./.	./.	0/1:62,43:31:105:0.410:2
chr17	29162173	rs11655623	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,4:31:8:0.500:2	0/1:37,30:29:67:0.448:2	./.	./.	./.	./.	./.	./.	0/1:38,44:29:82:0.537:2
chr17	29162212	rs78909753	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,32:32:60:0.533:2	0/1:12,19:32:31:0.613:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,29:32:73:0.397:2
chr17	29167653	rs3764421	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:33:8:1.00:2	0/1:47,35:32:82:0.427:2	./.	./.	./.	./.	./.	./.	0/1:57,41:32:98:0.418:2
chr17	29187497	rs9896095	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,6:33:11:0.545:2	0/1:30,28:33:58:0.483:2	./.	./.	./.	./.	./.	./.	0/1:43,31:32:74:0.419:2
chr17	29204527	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:34:110:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	29206433	rs9903862	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,42:27:75:0.560:2
chr17	29214387	rs11657270	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,23:33:49:0.469:2	./.	./.	./.	./.	./.	./.	0/1:27,39:33:66:0.591:2
chr17	29220896	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,59:29:127:0.465:2	./.	./.
chr17	29226228	rs2433	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,15:33:32:0.469:2	./.	./.	./.	./.	./.	./.	0/1:10,30:31:40:0.750:2
chr17	29227481	rs370890792	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:31:102:0.039:2	./.	./.	./.	./.
chr17	29233163	rs11653096	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:28:10:0.500:2	0/1:70,48:31:118:0.407:2	./.	./.	./.	./.	./.	./.	0/1:70,46:31:117:0.397:2
chr17	29272051	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:31:140:0.029:2	./.	./.	./.
chr17	29508775	rs1801052	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,62:31:64:0.969:2	0/1:0,35:30:35:1.00:2	./.	0/1:0,48:29:48:1.00:2	0/1:2,45:29:47:0.957:2	0/1:57,30:29:87:0.345:2	0/1:27,18:29:45:0.400:2	0/1:2,52:30:54:0.963:2	0/1:0,79:30:79:1.00:2	0/1:35,40:30:75:0.533:2	0/1:0,116:31:116:1.00:2
chr17	29528101	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:33:149:0.027:2	./.	./.	./.	./.
chr17	29553485	rs2285892	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	0/1:12,11:31:23:0.478:2	./.	./.	./.	0/1:15,6:31:21:0.286:2	./.
chr17	29556953	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:34:179:0.022:2	0/1:189,5:29:194:0.026:2	./.	./.	./.
chr17	29557352	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:191,9:29:200:0.045:2	./.	0/1:192,7:31:199:0.035:2	0/1:184,13:29:197:0.066:2	./.	0/1:190,8:30:198:0.040:2	./.
chr17	29557376	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:187,5:30:192:0.026:2	./.	./.	./.	./.	./.	./.
chr17	29557385	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,6:29:190:0.032:2	0/1:187,10:30:197:0.051:2	./.	0/1:176,8:29:184:0.043:2	./.
chr17	29557397	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:32:175:0.023:2	./.	./.	./.
chr17	29559146	rs145323424	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:31:159:0.025:2	./.	0/1:80,5:33:85:0.059:2	./.
chr17	29559157	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:32:175:0.023:2	./.	0/1:91,5:32:96:0.052:2	./.
chr17	29585369	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:33:85:0.047:2	./.
chr17	29586094	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:35:194:0.021:2
chr17	29622802	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:32:118:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	29646032	rs1129506	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,11:29:26:0.423:2	0/1:12,9:31:21:0.429:2	./.	0/1:0,19:29:19:1.00:2	0/1:1,27:30:28:0.964:2	0/1:9,9:29:18:0.500:2	0/1:11,5:30:16:0.313:2	0/1:1,25:31:26:0.962:2	0/1:0,23:31:23:1.00:2	0/1:6,7:31:13:0.538:2	0/1:0,24:31:24:1.00:2
chr17	29849423	rs72815700	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,42:30:88:0.477:2	./.	./.
chr17	29855467	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:33:61:0.066:2
chr17	29855661	rs2074149	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,26:30:72:0.361:2	./.	./.	0/1:50,43:30:94:0.462:2	./.	./.	./.	./.
chr17	29857460	rs61731602	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,25:33:61:0.410:2	0/1:6,29:32:35:0.829:2	0/1:0,12:32:12:1.00:2	0/1:39,23:31:62:0.371:2	0/1:34,33:31:67:0.493:2	0/1:37,34:32:71:0.479:2	./.	./.	0/1:30,26:32:56:0.464:2	./.	./.
chr17	30183857	rs8068049	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,31:29:79:0.397:2	0/1:22,29:29:51:0.569:2	0/1:0,10:29:10:1.00:2	0/1:70,55:30:125:0.440:2	0/1:0,79:29:79:1.00:2	0/1:0,89:29:89:1.00:2	0/1:0,97:29:97:1.00:2	0/1:0,113:29:113:1.00:2	0/1:0,129:30:129:1.00:2	0/1:0,87:29:87:1.00:2	0/1:3,109:29:112:0.973:2
chr17	30200461	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,4:33:50:0.080:2	./.	./.	./.	./.	./.	./.	./.
chr17	30200479	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,4:32:43:0.093:2	./.	./.	./.	./.	./.	./.	./.
chr17	30200487	rs375793542	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,4:32:41:0.098:2	./.	./.	./.	./.	./.	./.	./.
chr17	30205303	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:30:98:0.041:2	./.	./.	./.	./.
chr17	30205778	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:143,4:31:147:0.027:2	./.	./.	./.	./.	./.	./.
chr17	30222002	rs3760454	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:51,39:29:90:0.433:2	0/1:39,34:28:73:0.466:2	0/1:0,13:29:13:1.00:2	./.	./.	0/1:67,52:29:119:0.437:2	0/1:1,46:29:47:0.979:2	0/1:87,56:29:143:0.392:2	0/1:0,150:30:150:1.00:2	0/1:2,87:29:89:0.978:2	0/1:3,159:29:162:0.981:2
chr17	30264377	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.
chr17	30302530	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:32:72:0.056:2	./.	./.	./.
chr17	30302638	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,4:33:76:0.053:2	./.	./.	./.	./.	./.	./.
chr17	30302659	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:31:153:0.026:2
chr17	30303546	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:32:200:0.020:2	./.	./.
chr17	30349328	rs140109047	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,3:33:40:0.075:2	./.	./.	./.	./.	./.	./.
chr17	30349577	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,5:32:80:0.063:2	./.	./.	./.
chr17	30351758	rs199689901	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,20:29:180:0.111:2	0/1:124,14:31:138:0.101:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	30357699	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:33:143:0.028:2	./.	./.
chr17	30357714	rs201577424	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:77,20:30:97:0.206:2	0/1:60,17:29:77:0.221:2	./.	./.	./.	./.	./.	./.	./.	0/1:63,7:31:70:0.100:2	./.
chr17	30357746	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:31:119:0.034:2	./.	./.
chr17	30361913	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,6:32:187:0.032:2
chr17	30361940	rs373846335	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:33:180:0.022:2
chr17	30361986	rs369987095	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,6:31:190:0.032:2	./.	0/1:165,4:33:169:0.024:2	./.	./.	./.
chr17	30372739	rs1638299	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,5:31:55:0.093:2	0/1:21,8:32:29:0.276:2	0/1:10,7:32:17:0.412:2	0/1:47,4:32:51:0.078:2	./.	0/1:65,10:30:75:0.133:2	./.	./.	./.	./.	0/1:61,4:32:65:0.062:2
chr17	30374793	.	T	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:65,4:28:69:0.058:2	./.	./.	0/1:63,5:29:68:0.074:2	0/1:60,9:28:69:0.130:2	./.	0/1:56,8:28:64:0.125:2	./.	0/1:70,5:27:75:0.067:2	./.	0/1:74,5:27:79:0.063:2
chr17	30374824	.	A	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:92,5:34:97:0.052:2	0/1:66,5:33:71:0.070:2	./.	0/1:97,4:32:101:0.040:2	0/1:94,5:32:99:0.051:2	0/1:107,6:35:113:0.053:2	0/1:116,7:35:123:0.057:2	./.	./.	0/1:70,4:35:74:0.054:2	./.
chr17	30376268	rs139379458	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:151,36:29:187:0.193:2	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.	./.	./.
chr17	30533970	rs16967164	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:54,48:33:102:0.471:2	0/1:26,27:33:53:0.509:2	./.	0/1:0,111:33:111:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr17	30625205	rs4795690	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,16:32:22:0.727:2	0/1:57,70:30:127:0.551:2	./.	./.	0/1:78,53:30:131:0.405:2	./.	./.	./.	./.
chr17	30692396	rs3795244	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,17:31:31:0.548:2	./.	./.	./.	./.	./.	./.	./.
chr17	30692413	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:34:60:0.067:2	./.	./.
chr17	30815681	rs8192474	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:55,19:31:74:0.257:2	0/1:21,13:31:34:0.382:2	./.	0/1:34,27:31:61:0.443:2	0/1:0,34:30:34:1.00:2	0/1:28,25:30:53:0.472:2	./.	0/1:35,24:30:59:0.407:2	./.	0/1:0,47:30:47:1.00:2	./.
chr17	30817130	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:34:95:0.042:2	./.	./.	./.	./.	./.
chr17	30817450	rs735555	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,95:31:97:0.979:2	0/1:3,68:32:71:0.958:2	./.	0/1:73,75:31:149:0.507:2	0/1:0,92:31:92:1.00:2	0/1:84,65:31:149:0.436:2	./.	0/1:97,74:31:172:0.433:2	./.	0/1:2,118:31:120:0.983:2	./.
chr17	30932148	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:31:137:0.029:2	./.
chr17	31203856	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:31:59:0.068:2	./.	./.	./.	./.	./.
chr17	31258657	rs148593533	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,59:31:101:0.584:2	./.	./.	./.	./.
chr17	31260255	rs29019	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,49:31:113:0.434:2	./.	./.	./.	./.	./.	./.	./.
chr17	31319024	rs2188953	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:25,4:26:29:0.138:2	0/1:8,10:32:18:0.556:2	./.	0/1:3,24:33:27:0.889:2	./.	0/1:0,30:32:30:1.00:2	0/1:32,10:32:42:0.238:2	0/1:0,30:32:30:1.00:2	0/1:25,14:33:39:0.359:2	./.	0/1:20,16:32:36:0.444:2
chr17	31618551	rs9890913	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,17:30:28:0.607:2	./.	./.	./.	./.	./.	./.	./.
chr17	31618732	rs9893935	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,4:26:11:0.364:2	0/1:2,105:28:107:0.981:2	0/1:89,45:28:134:0.336:2	./.	0/1:46,34:27:80:0.425:2	0/1:90,70:28:160:0.438:2	0/1:54,31:28:86:0.365:2	./.	0/1:28,15:26:43:0.349:2
chr17	32483237	rs2228990	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:44,17:30:61:0.279:2	0/1:19,7:28:26:0.269:2	0/1:8,7:29:15:0.467:2	./.	0/1:46,43:29:89:0.483:2	./.	0/1:70,56:28:126:0.444:2	./.	0/1:41,33:28:74:0.446:2	0/1:35,27:28:62:0.435:2	./.
chr17	32483270	rs2228989	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:33:15:0.600:2	./.	0/1:49,40:32:89:0.449:2	./.	0/1:73,60:33:133:0.451:2	./.	0/1:43,38:34:81:0.469:2	0/1:43,32:33:75:0.427:2	./.
chr17	32483479	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:106,19:10:126:0.152:2	./.	./.	./.	0/1:81,13:12:94:0.138:2	0/1:68,15:10:83:0.181:2	./.
chr17	32583269	rs4586	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,49:33:49:1.00:2	0/1:32,26:32:58:0.448:2	0/1:0,64:33:64:1.00:2	./.	./.	0/1:27,44:34:71:0.620:2	./.	0/1:38,25:33:63:0.397:2
chr17	32612894	rs1129844	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,7:30:10:0.700:2	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:32:6:0.500:2	./.	./.
chr17	32647831	rs1133763	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,41:33:126:0.325:2	0/1:37,35:31:72:0.486:2	./.	./.	./.	./.	./.	0/1:60,38:32:98:0.388:2
chr17	32690169	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:30:129:0.031:2	./.	./.	./.	./.
chr17	32904586	rs887230	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,116:33:117:0.991:2	0/1:1,77:32:78:0.987:2	0/1:0,20:31:20:1.00:2	0/1:94,78:33:172:0.453:2	0/1:0,149:32:149:1.00:2	0/1:75,96:32:171:0.561:2	0/1:1,144:33:145:0.993:2	0/1:0,176:32:177:1.00:2	0/1:0,155:33:155:1.00:2	0/1:0,140:32:141:1.00:2	0/1:0,117:33:117:1.00:2
chr17	32953556	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	./.
chr17	32957114	rs56879769	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,39:32:74:0.527:2	0/1:27,22:31:49:0.449:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	32962004	rs73988752	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,16:31:29:0.552:2	0/1:17,11:32:28:0.393:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	32962050	rs75594429	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,9:29:27:0.333:2	0/1:25,6:31:31:0.194:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	33269648	rs2230553	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,10:33:16:0.625:2	./.	./.	./.	./.	0/1:0,11:33:11:1.00:2	0/1:9,5:33:14:0.357:2	./.	0/1:9,7:34:16:0.438:2	0/1:0,8:33:8:1.00:2	0/1:0,18:32:18:1.00:2
chr17	33286621	rs17852354	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,40:30:100:0.400:2	0/1:60,56:31:116:0.483:2	./.	./.
chr17	33286664	rs2230552	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:31,31:34:63:0.500:2	0/1:14,16:32:31:0.533:2	0/1:6,7:33:13:0.538:2	./.	0/1:29,53:33:82:0.646:2	./.	./.	0/1:53,41:32:94:0.436:2	0/1:54,43:34:97:0.443:2	./.	./.
chr17	33288363	rs9635769	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,31:32:31:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,2:32:2:1.00:2	./.	0/1:8,8:28:16:0.500:2	0/1:0,28:30:28:1.00:2	0/1:15,15:31:30:0.500:2	0/1:24,21:32:45:0.467:2	0/1:0,36:31:36:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,23:32:23:1.00:2
chr17	33288882	rs931196	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:32:44:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,53:32:53:1.00:2	0/1:1,50:32:51:0.980:2	0/1:0,44:32:44:1.00:2	0/1:1,61:32:62:0.984:2	0/1:0,69:32:69:1.00:2	0/1:1,58:33:59:0.983:2	0/1:0,34:33:34:1.00:2	0/1:0,57:32:57:1.00:2
chr17	33289046	rs3744355	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,21:32:67:0.313:2	0/1:31,33:32:64:0.516:2	./.	./.
chr17	33289937	rs8249	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,41:33:41:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,7:32:7:1.00:2	./.	0/1:22,13:32:35:0.371:2	0/1:0,21:30:21:1.00:2	0/1:8,14:32:22:0.636:2	0/1:21,16:32:37:0.432:2	0/1:0,33:33:33:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,45:32:45:1.00:2
chr17	33290014	rs11543122	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,10:32:34:0.294:2	0/1:22,17:33:39:0.436:2	./.	./.
chr17	33310070	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:33:189:0.021:2	./.	./.	./.
chr17	33433487	rs4796033	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,8:33:13:0.615:2	0/1:32,35:32:67:0.522:2	0/1:33,31:33:64:0.484:2	./.	0/1:64,23:32:87:0.264:2	./.	./.	./.	./.
chr17	33445549	rs9901455	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,23:29:51:0.451:2	./.	0/1:40,17:30:57:0.298:2	./.	./.	./.	./.
chr17	33448818	rs1871892	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,42:33:95:0.442:2	0/1:22,19:31:41:0.463:2	0/1:10,11:32:21:0.524:2	0/1:0,141:33:141:1.00:2	0/1:0,75:32:75:1.00:2	0/1:80,56:31:136:0.412:2	0/1:77,43:33:120:0.358:2	0/1:2,111:32:113:0.982:2	./.	./.	./.
chr17	33454415	rs2306508	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,12:34:36:0.333:2	./.	0/1:0,3:33:3:1.00:2	0/1:20,22:33:42:0.524:2	0/1:18,18:32:36:0.500:2	./.	./.	0/1:0,36:32:37:1.00:2	./.	./.	./.
chr17	33464864	rs7215209	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,14:34:22:0.636:2	0/1:6,5:32:11:0.455:2	./.	0/1:2,32:33:34:0.941:2	0/1:0,16:31:16:1.00:2	0/1:12,9:32:21:0.429:2	0/1:22,12:33:34:0.353:2	0/1:0,26:32:26:1.00:2	./.	./.	0/1:17,23:33:40:0.575:2
chr17	33469279	rs1471615	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,3:30:3:1.00:2	./.	0/1:0,2:34:2:1.00:2	0/1:0,4:29:4:1.00:2	./.	./.	0/1:0,7:28:7:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,3:32:3:1.00:2	./.
chr17	33477242	rs80100968	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,29:33:50:0.580:2	./.	./.	./.	0/1:27,24:31:51:0.471:2	./.	./.	./.
chr17	33498439	rs8075756	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,25:31:60:0.417:2	./.	./.	0/1:33,29:32:62:0.468:2	./.	./.	./.	./.
chr17	33513337	rs11654824	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:25,23:31:48:0.479:2	0/1:23,6:32:29:0.207:2	./.	./.	0/1:48,21:31:69:0.304:2	./.	./.	./.	./.	./.	./.
chr17	33520323	rs369787605	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,4:33:72:0.056:2	0/1:78,5:31:83:0.060:2	./.	./.	./.	./.	./.	./.
chr17	33521102	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,6:31:115:0.052:2
chr17	33521194	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,3:31:37:0.081:2	./.	./.
chr17	33521356	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,6:31:49:0.125:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	33521402	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,7:33:30:0.233:2	./.	./.	0/1:68,4:32:72:0.056:2	./.	./.	./.	./.	0/1:56,6:33:62:0.097:2	./.
chr17	33521418	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,3:30:17:0.176:2	./.	./.	./.	./.	./.	0/1:79,4:29:83:0.048:2	./.	0/1:39,4:32:43:0.093:2	./.
chr17	33591922	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:33:70:0.057:2	./.
chr17	33592323	rs113644060	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,36:31:82:0.439:2	./.	0/1:59,57:30:116:0.491:2	0/1:43,58:31:101:0.574:2	./.	./.	./.	./.
chr17	33592591	rs11651240	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,68:33:68:1.00:2	0/1:2,49:32:51:0.961:2	0/1:7,7:32:14:0.500:2	./.	0/1:2,46:32:48:0.958:2	0/1:38,36:32:74:0.486:2	0/1:54,26:33:80:0.325:2	./.	0/1:49,47:33:96:0.490:2	0/1:0,72:33:72:1.00:2	0/1:0,101:33:101:1.00:2
chr17	33680107	rs3744370	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,3:33:15:0.200:2	./.	0/1:48,4:29:52:0.077:2
chr17	33680156	rs371572826	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.
chr17	33680559	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:119,19:12:138:0.138:2	./.	0/1:114,19:12:133:0.143:2	./.	./.	./.	./.	./.
chr17	33680710	rs202115057	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,11:32:25:0.440:2	./.	./.	./.	./.	./.	0/1:157,34:32:192:0.178:2	./.	./.
chr17	33680807	rs9897352	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,58:32:93:0.624:2	0/1:26,26:32:52:0.500:2	0/1:3,7:32:10:0.700:2	0/1:45,39:32:84:0.464:2	0/1:68,21:31:89:0.236:2	./.	0/1:61,23:32:84:0.274:2	0/1:40,52:32:92:0.565:2	0/1:36,39:32:75:0.520:2	0/1:36,42:32:78:0.538:2	./.
chr17	33680811	rs9898983	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,23:31:82:0.280:2	./.	./.	./.
chr17	33680840	rs28571667	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:33:32:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,3:34:3:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,46:32:46:1.00:2
chr17	33689926	rs4796077	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,177:32:177:1.00:2	0/1:0,124:32:124:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,192:33:192:1.00:2	0/1:1,154:32:155:0.994:2	0/1:0,187:32:187:1.00:2	0/1:0,178:32:178:1.00:2	0/1:0,172:32:172:1.00:2	0/1:0,188:33:188:1.00:2	0/1:0,178:32:178:1.00:2	0/1:0,190:33:190:1.00:2
chr17	33690466	rs12453150	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:31:27:1.00:2	0/1:0,14:31:14:1.00:2	0/1:2,3:32:5:0.600:2	0/1:1,49:30:50:0.980:2	0/1:23,12:30:35:0.343:2	0/1:22,20:31:42:0.476:2	0/1:0,28:31:28:1.00:2	0/1:17,22:31:39:0.564:2	0/1:0,37:31:37:1.00:2	0/1:1,31:30:32:0.969:2	0/1:35,18:30:53:0.340:2
chr17	33690619	rs72825958	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,43:30:82:0.524:2	./.	./.	./.	./.	0/1:48,30:31:79:0.385:2
chr17	33738555	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:32:113:0.035:2	./.	./.	./.	./.
chr17	33738580	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:33:133:0.030:2	./.	./.	./.	./.
chr17	33738741	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:33:146:0.028:2	./.	./.	./.	./.	0/1:150,4:32:154:0.026:2
chr17	33738742	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:31:142:0.028:2	./.	./.	./.	./.	./.
chr17	33738890	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,14:30:22:0.636:2	./.	./.
chr17	33749546	rs2586514	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,16:29:35:0.457:2	0/1:4,7:28:11:0.636:2	0/1:2,3:31:5:0.600:2	0/1:1,24:28:25:0.960:2	0/1:0,34:28:34:1.00:2	./.	0/1:13,13:28:26:0.500:2	0/1:24,11:29:35:0.314:2	0/1:0,39:30:40:1.00:2	0/1:1,26:27:27:0.963:2	./.
chr17	33749827	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,6:32:67:0.092:2	./.	./.	./.	./.	./.
chr17	33749919	rs1849733	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,59:33:130:0.454:2	0/1:37,24:31:61:0.393:2	0/1:10,10:32:20:0.500:2	0/1:2,125:32:127:0.984:2	0/1:51,29:31:80:0.363:2	./.	0/1:101,4:33:105:0.038:2	0/1:67,69:32:136:0.507:2	0/1:99,79:32:178:0.444:2	0/1:1,90:33:91:0.989:2	./.
chr17	33767667	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:152,4:32:156:0.026:2	./.	./.	./.	./.	./.	./.
chr17	33768199	rs1822403	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,64:32:64:1.00:2	0/1:1,44:32:45:0.978:2	./.	./.	./.	0/1:0,74:30:74:1.00:2	0/1:20,18:32:38:0.474:2	0/1:51,36:32:87:0.414:2	./.	./.	0/1:49,38:31:87:0.437:2
chr17	33768354	rs3744371	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,15:30:15:1.00:2	0/1:1,11:31:12:0.917:2	./.	./.	0/1:17,12:30:29:0.414:2	0/1:0,15:31:15:1.00:2	0/1:0,11:31:11:1.00:2	0/1:9,9:31:18:0.500:2	0/1:11,6:32:17:0.353:2	./.	0/1:14,15:31:29:0.517:2
chr17	33768383	rs11657183	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,8:30:22:0.364:2	./.	0/1:5,5:32:10:0.500:2	./.	0/1:5,6:33:11:0.545:2	./.	./.
chr17	33768786	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,5:21:24:0.208:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	33768937	rs114866073	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,9:31:43:0.209:2	./.	./.	./.	./.	./.	0/1:148,49:31:197:0.249:2	./.	./.
chr17	33769034	rs62078110	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:97,92:33:189:0.487:2	0/1:117,71:32:188:0.378:2	0/1:43,57:32:100:0.570:2	0/1:102,94:33:197:0.480:2	0/1:147,49:32:196:0.250:2	./.	0/1:142,49:33:191:0.257:2	0/1:100,99:33:199:0.497:2	0/1:113,81:34:194:0.418:2	0/1:98,98:33:196:0.500:2	./.
chr17	33769038	rs62078111	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,44:33:199:0.221:2	./.	./.	./.
chr17	33769172	rs3098957	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:143,8:29:151:0.053:2	0/1:108,5:28:113:0.044:2	0/1:134,8:31:142:0.056:2	0/1:141,7:30:148:0.047:2	0/1:136,6:31:142:0.042:2	./.	0/1:126,6:31:132:0.045:2	0/1:111,8:29:119:0.067:2
chr17	33771683	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:29:95:0.042:2	./.	./.	./.	./.	./.
chr17	33772550	rs76192030	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:31:10:0.500:2	./.	0/1:36,26:30:62:0.419:2	./.	./.	./.	0/1:58,50:31:108:0.463:2	./.	./.
chr17	33772658	rs8072510	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:45,34:31:79:0.430:2	0/1:18,29:32:47:0.617:2	./.	./.	./.	./.	0/1:24,5:31:29:0.172:2	./.	./.	./.	./.
chr17	33772689	rs12943866	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,25:31:44:0.568:2	./.	0/1:14,13:32:27:0.481:2	./.
chr17	33802113	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,5:32:122:0.041:2	0/1:175,7:32:182:0.038:2	./.	./.	./.
chr17	33802114	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,5:33:123:0.041:2	0/1:178,8:29:186:0.043:2	./.	./.	./.
chr17	33802127	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:28:193:0.026:2
chr17	33802138	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,7:29:159:0.044:2	0/1:191,7:32:198:0.035:2	./.	./.	./.
chr17	33802156	rs3744372	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,61:32:133:0.459:2	./.	./.	0/1:98,85:32:183:0.464:2	0/1:94,90:33:184:0.489:2	0/1:105,78:33:183:0.426:2	./.
chr17	33805150	rs2304968	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,57:32:57:1.00:2	0/1:2,33:31:35:0.943:2	0/1:0,4:31:4:1.00:2	./.	0/1:18,12:31:30:0.400:2	0/1:0,48:31:48:1.00:2	0/1:27,34:33:61:0.557:2	0/1:2,51:32:53:0.962:2	0/1:41,31:33:72:0.431:2	0/1:21,22:32:43:0.512:2	0/1:0,74:32:74:1.00:2
chr17	33805180	rs2304967	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,21:31:46:0.457:2	./.	./.	0/1:36,25:33:61:0.410:2	0/1:44,31:33:75:0.413:2	0/1:25,20:32:45:0.444:2	./.
chr17	33806332	rs8066132	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,32:31:70:0.457:2	./.	./.	0/1:54,37:31:91:0.407:2	0/1:57,39:32:96:0.406:2	0/1:38,43:31:81:0.531:2	./.
chr17	33806812	rs12451876	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,32:31:71:0.451:2	./.	./.	0/1:73,40:32:113:0.354:2	0/1:62,38:33:100:0.380:2	0/1:49,38:32:87:0.437:2	./.
chr17	33806863	rs12451746	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:55,37:31:92:0.402:2	0/1:28,31:32:59:0.525:2	0/1:4,4:30:8:0.500:2	./.	./.	0/1:0,88:30:88:1.00:2	./.	0/1:44,41:30:85:0.482:2	./.	./.	0/1:0,94:31:94:1.00:2
chr17	33849332	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:190,6:30:196:0.031:2	./.	./.	0/1:188,7:30:196:0.036:2	./.	./.	./.
chr17	33849399	rs191115335	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,87:31:178:0.489:2	./.	./.	./.	./.	./.	./.	./.
chr17	33875262	rs8073060	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:11,11:34:22:0.500:2	0/1:4,5:32:9:0.556:2	./.	0/1:14,8:32:22:0.364:2	./.	./.	./.	0/1:10,8:32:18:0.444:2	0/1:11,11:33:22:0.500:2	0/1:13,8:31:21:0.381:2	0/1:10,14:32:24:0.583:2
chr17	33875284	rs9907259	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,17:32:34:0.500:2	./.	./.
chr17	33875688	rs78364481	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,40:31:102:0.392:2
chr17	33876083	rs1001441	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:30:9:0.667:2	./.	./.	./.	0/1:38,25:31:63:0.397:2	./.	./.	./.	./.
chr17	33879748	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,39:32:91:0.429:2
chr17	33880003	rs28498569	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,14:28:31:0.452:2	./.	./.	./.	./.
chr17	33881631	rs321612	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,29:31:63:0.460:2	0/1:23,21:30:44:0.477:2	0/1:5,6:30:11:0.545:2	0/1:58,36:30:94:0.383:2	0/1:44,25:29:69:0.362:2	0/1:44,42:30:86:0.488:2	0/1:0,76:31:76:1.00:2	./.	0/1:0,87:31:87:1.00:2	./.	0/1:67,62:31:129:0.481:2
chr17	33881718	rs321613	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,14:32:37:0.378:2	0/1:17,10:32:27:0.370:2	0/1:0,4:31:4:1.00:2	0/1:31,24:30:55:0.436:2	0/1:24,16:31:40:0.400:2	0/1:23,18:31:41:0.439:2	0/1:0,47:31:47:1.00:2	./.	0/1:0,43:32:43:1.00:2	./.	0/1:36,30:30:67:0.455:2
chr17	33884804	rs10512472	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,12:28:22:0.545:2	./.	./.	./.	0/1:47,28:29:75:0.373:2	./.	0/1:55,53:29:108:0.491:2	./.	./.
chr17	33884943	rs371510564	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,3:35:82:0.037:2	./.	./.	./.
chr17	33904233	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:31:58:0.069:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	33904939	rs147530802	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,37:30:81:0.457:2
chr17	33921106	rs117097051	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,33:32:84:0.393:2	./.	./.
chr17	33935223	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,4:31:69:0.058:2	./.	./.	./.	./.	./.	./.
chr17	33998802	rs1049379	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,20:31:49:0.426:2	0/1:18,8:32:26:0.308:2	./.	0/1:32,37:31:69:0.536:2	0/1:34,21:30:55:0.382:2	0/1:25,14:31:39:0.359:2	0/1:43,17:32:60:0.283:2	./.	0/1:30,16:33:46:0.348:2	./.	0/1:36,29:32:65:0.446:2
chr17	33998904	rs17670584	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,68:29:134:0.507:2	./.	0/1:53,55:30:108:0.509:2	./.	./.
chr17	34009840	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:33:53:0.075:2	./.	./.	./.	./.
chr17	34050662	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:121,4:33:125:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr17	34062322	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:31:85:0.047:2	./.	./.	./.	./.	./.
chr17	34068144	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:34:90:0.044:2	./.
chr17	34072031	rs56386706	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,36:32:70:0.514:2	./.	./.	./.	./.	./.	./.
chr17	34072449	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,30:32:51:0.588:2	./.	./.	./.	./.	./.	./.	./.
chr17	34072555	rs3744374	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,14:30:41:0.341:2	./.	0/1:20,9:29:29:0.310:2	./.	./.	./.	./.	./.
chr17	34072869	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,17:31:52:0.327:2	./.	./.	./.
chr17	34072898	rs12602590	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,10:31:32:0.313:2	./.	./.	./.	./.	./.	./.
chr17	34073226	rs75608951	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,58:30:136:0.426:2	./.	./.	./.	./.	./.	./.	./.
chr17	34077232	rs11654604	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,69:31:126:0.548:2	./.	./.	0/1:37,65:31:102:0.637:2	./.	0/1:16,20:31:36:0.556:2	./.
chr17	34079750	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,58:31:89:0.652:2
chr17	34087993	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:32:80:0.050:2	./.	./.	./.	./.
chr17	34091078	rs4795087	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,23:32:66:0.348:2	./.	./.	./.	./.	./.	./.	./.
chr17	34093725	rs138254597	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,10:29:39:0.256:2	./.	./.	./.	./.	./.
chr17	34093726	rs143040759	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,10:30:39:0.256:2	./.	./.	./.	./.	./.
chr17	34100268	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:33:73:0.055:2	./.	./.	./.	./.	./.
chr17	34151149	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,14:19:118:0.119:2	./.	./.	./.	./.	./.	./.	./.
chr17	34161569	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:35:95:0.042:2	./.
chr17	34171590	rs4251785	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,8:32:11:0.727:2	0/1:35,23:31:58:0.397:2	./.	./.	./.	./.	./.	./.	./.
chr17	34171827	rs4251786	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,24:30:41:0.585:2	0/1:10,10:31:20:0.500:2	./.	./.	0/1:27,24:29:51:0.471:2	0/1:24,15:30:39:0.385:2	./.	./.	./.	0/1:16,13:32:29:0.448:2	0/1:15,12:28:27:0.444:2
chr17	34173937	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:32:149:0.027:2
chr17	34182341	rs2306630	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,38:31:101:0.376:2	./.	./.	./.	./.
chr17	34190069	rs115641363	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,22:31:59:0.373:2	./.	./.	./.	./.	./.	./.
chr17	34190122	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,26:33:50:0.542:2	./.	./.	./.	./.	./.
chr17	34252537	rs2251660	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,5:32:6:0.833:2	0/1:20,28:31:49:0.583:2	./.	./.	0/1:25,20:32:45:0.444:2	./.	./.	./.	./.
chr17	34261831	rs9754	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,25:32:58:0.431:2	./.	./.	0/1:21,18:34:39:0.462:2	./.	./.	./.	./.
chr17	34264859	rs2280783	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:57,63:29:120:0.525:2	0/1:49,33:29:82:0.402:2	./.	./.	0/1:51,54:29:105:0.514:2	0/1:73,59:29:132:0.447:2	./.	./.	./.	0/1:84,39:30:123:0.317:2	./.
chr17	34264862	rs1052266	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,65:29:125:0.520:2	./.	./.	./.	./.
chr17	34304605	rs79254649	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,35:31:87:0.402:2	./.	./.	./.
chr17	34304680	rs74842203	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,76:30:189:0.402:2	./.	./.	./.
chr17	34311387	rs16971802	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,30:32:68:0.441:2	0/1:17,13:29:30:0.433:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,28:30:86:0.326:2
chr17	34313612	rs75238886	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,59:32:110:0.536:2	./.	./.
chr17	34328461	rs854625	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,106:33:106:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,18:32:18:1.00:2	0/1:1,160:33:161:0.994:2	0/1:0,181:32:181:1.00:2	0/1:0,148:32:148:1.00:2	0/1:1,185:32:186:0.995:2	0/1:3,186:33:189:0.984:2	0/1:0,138:34:138:1.00:2	0/1:0,122:33:122:1.00:2	0/1:0,117:32:117:1.00:2
chr17	34328542	rs2293788	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:25,24:31:49:0.490:2	0/1:20,17:32:37:0.459:2	./.	./.	./.	./.	./.	0/1:42,50:32:92:0.543:2	./.	./.	0/1:31,33:32:64:0.516:2
chr17	34340284	rs1003645	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,38:31:95:0.400:2	0/1:23,24:31:47:0.511:2	0/1:0,18:31:18:1.00:2	0/1:0,102:32:102:1.00:2	0/1:72,56:31:128:0.438:2	0/1:2,124:31:126:0.984:2	0/1:1,135:32:136:0.993:2	./.	0/1:67,59:32:126:0.468:2	./.	0/1:79,45:32:124:0.363:2
chr17	34391783	rs2015070	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,42:32:110:0.382:2	./.	./.	./.	0/1:27,37:32:64:0.578:2
chr17	34416063	rs34171309	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,83:33:163:0.509:2	./.	./.
chr17	34416537	rs1130371	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,26:32:55:0.473:2	./.	0/1:107,90:32:197:0.457:2	./.	./.	./.	0/1:98,91:34:189:0.481:2	./.	./.
chr17	34431287	rs1049750	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,185:32:187:0.989:2	0/1:7,183:31:191:0.963:2	0/1:1,46:30:47:0.979:2	0/1:1,191:32:192:0.995:2	0/1:2,196:31:198:0.990:2	0/1:0,188:30:188:1.00:2	0/1:0,197:31:197:1.00:2	0/1:0,193:31:193:1.00:2	0/1:2,186:33:188:0.989:2	0/1:1,189:32:190:0.995:2	0/1:0,189:32:189:1.00:2
chr17	34431357	rs1130750	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,6:33:197:0.030:2	./.	./.
chr17	34431361	rs1130755	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,5:32:196:0.026:2	./.	./.
chr17	34431961	rs1719146	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,128:31:130:0.985:2	0/1:0,67:31:67:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,118:31:118:1.00:2	0/1:3,91:30:94:0.968:2	0/1:2,102:30:104:0.981:2	0/1:2,96:31:98:0.980:2	0/1:2,136:30:138:0.986:2	0/1:0,130:31:130:1.00:2	0/1:0,112:30:112:1.00:2	0/1:0,132:30:132:1.00:2
chr17	34432663	rs1049807	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,17:32:37:0.459:2	./.	0/1:85,91:32:176:0.517:2	./.	./.	./.	0/1:80,84:33:164:0.512:2	./.	./.
chr17	34432664	rs1719152	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,17:30:37:0.459:2	./.	0/1:87,89:30:176:0.506:2	./.	./.	./.	0/1:80,83:31:164:0.509:2	./.	./.
chr17	34522695	rs201343647	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:137,56:29:193:0.290:2	0/1:97,23:29:120:0.192:2	./.	./.	./.	./.	./.	0/1:176,21:30:197:0.107:2	0/1:155,35:30:190:0.184:2	./.	./.
chr17	34522774	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:33:117:0.034:2	./.	./.
chr17	34523265	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:143,14:32:157:0.089:2	0/1:93,10:33:103:0.097:2	./.	./.	./.	./.	0/1:3,11:33:14:0.786:2	./.	0/1:109,27:32:136:0.199:2	./.	./.
chr17	34538532	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,186:31:195:0.954:2	./.	./.	./.	./.
chr17	34539235	rs200975376	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:112,38:31:152:0.253:2	0/1:119,41:32:161:0.256:2	./.	./.	./.	./.	./.	./.	0/1:139,51:32:190:0.268:2	./.	./.
chr17	34624269	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:157,28:26:185:0.151:2	0/1:131,24:27:155:0.155:2	./.	./.	./.	./.	./.	0/1:164,7:28:171:0.041:2	./.	./.	./.
chr17	34624839	rs148438676	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:155,15:33:171:0.088:2	0/1:97,9:29:106:0.085:2	./.	./.	./.	./.	0/1:4,28:34:32:0.875:2	./.	0/1:126,29:31:155:0.187:2	./.	./.
chr17	34640098	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,179:31:189:0.947:2	./.	./.	./.	./.
chr17	34640801	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:126,35:30:161:0.217:2	0/1:127,38:31:165:0.230:2	./.	./.	./.	./.	./.	./.	0/1:150,36:32:186:0.194:2	./.	./.
chr17	34854280	rs2306590	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,39:33:66:0.591:2	./.	./.	0/1:32,31:31:63:0.492:2	0/1:34,39:32:73:0.534:2	0/1:31,34:32:65:0.523:2	0/1:0,65:31:65:1.00:2	0/1:0,92:31:92:1.00:2
chr17	34866639	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:30:85:0.047:2
chr17	34871721	rs2306595	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:33:10:0.400:2	./.	./.	./.	./.	0/1:60,30:33:90:0.333:2	./.	./.	./.
chr17	34884029	rs61738887	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,24:32:60:0.400:2	./.	./.	./.	./.	./.
chr17	34893326	rs72818370	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:28:8:0.375:2	./.	./.	./.	./.	0/1:46,54:28:100:0.540:2	./.	./.	./.
chr17	34894612	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,20:31:42:0.476:2	./.	./.	./.	./.
chr17	34942595	rs1106908	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,13:32:20:0.650:2	./.	./.	0/1:14,9:32:23:0.391:2	0/1:22,9:30:31:0.290:2	0/1:13,16:32:29:0.552:2	0/1:0,21:31:21:1.00:2	0/1:0,28:31:28:1.00:2
chr17	34951458	rs143529065	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,38:32:93:0.409:2
chr17	34958405	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,6:20:54:0.111:2	./.	./.
chr17	34958598	rs78943308	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:33:4:0.750:2	./.	./.	./.	./.	0/1:10,5:33:15:0.333:2	./.	./.	./.
chr17	35295653	rs34167802	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,27:31:56:0.482:2	./.	./.	./.	./.	./.	./.	./.
chr17	35300098	rs375453089	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:31:109:0.037:2	./.	./.	./.
chr17	35346641	rs1045056	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,10:30:14:0.714:2	./.	0/1:49,22:29:71:0.310:2	./.	0/1:41,32:28:73:0.438:2	./.	0/1:41,24:27:65:0.369:2	./.	0/1:35,37:27:72:0.514:2
chr17	35470138	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.	./.	./.
chr17	35478362	rs1470452	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:30:33:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,2:29:2:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,23:28:23:1.00:2	0/1:1,30:29:31:0.968:2	0/1:0,35:30:35:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,41:28:41:1.00:2
chr17	35609866	rs2229416	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:25,27:32:52:0.519:2	0/1:10,11:32:21:0.524:2	0/1:0,2:31:2:1.00:2	./.	./.	0/1:30,35:31:65:0.538:2	0/1:22,27:31:49:0.551:2	./.	./.	./.	./.
chr17	35640269	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:32:161:0.025:2	./.	./.	./.
chr17	35696804	rs58654829	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,7:32:7:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,2:28:2:1.00:2	0/1:0,5:31:5:1.00:2	./.	0/1:0,6:31:6:1.00:2	0/1:0,2:31:2:1.00:2	0/1:5,5:31:10:0.500:2	0/1:1,4:31:5:0.800:2	0/1:0,6:31:6:1.00:2	0/1:4,4:33:8:0.500:2
chr17	35743010	rs1714987	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,11:32:28:0.393:2	0/1:8,11:32:19:0.579:2	0/1:0,2:31:2:1.00:2	0/1:7,9:31:16:0.563:2	0/1:13,7:32:20:0.350:2	./.	0/1:5,7:34:12:0.583:2	./.	./.	./.	./.
chr17	35771468	rs7211875	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,21:31:53:0.396:2	0/1:17,12:31:29:0.414:2	0/1:0,18:29:18:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,36:31:36:1.00:2	0/1:29,37:31:66:0.561:2	0/1:0,39:30:39:1.00:2	0/1:0,57:31:57:1.00:2	0/1:32,31:32:63:0.492:2	0/1:43,35:31:78:0.449:2	0/1:0,64:31:64:1.00:2
chr17	35800764	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:33:143:0.028:2	./.	./.
chr17	35873324	rs1051849	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,18:34:59:0.305:2	0/1:28,18:33:46:0.391:2	./.	./.	./.	./.	./.	./.	0/1:71,46:34:117:0.393:2	0/1:44,37:33:81:0.457:2	./.
chr17	35873369	rs138399609	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,43:31:94:0.457:2	./.
chr17	35896123	rs1045000	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,49:32:98:0.500:2	./.	0/1:43,48:32:91:0.527:2	./.	0/1:67,43:32:110:0.391:2	0/1:39,35:31:74:0.473:2
chr17	35902225	rs3110623	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,53:33:54:0.981:2	0/1:2,33:32:35:0.943:2	0/1:6,3:33:9:0.333:2	0/1:0,56:33:56:1.00:2	0/1:23,21:31:45:0.477:2	./.	0/1:23,25:33:48:0.521:2	./.	0/1:20,35:33:55:0.636:2	0/1:27,12:32:39:0.308:2	0/1:41,33:33:74:0.446:2
chr17	35936486	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,4:33:71:0.056:2	./.	./.	./.	./.	./.	./.	./.
chr17	35937637	rs12602536	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,27:33:55:0.491:2	0/1:18,13:33:31:0.419:2	./.	./.	./.	./.	./.	./.	0/1:36,41:34:77:0.532:2	0/1:27,22:31:49:0.449:2	0/1:31,39:33:70:0.557:2
chr17	35939328	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:30:115:0.035:2	./.	./.	./.	./.
chr17	35946589	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:33:141:0.028:2	./.
chr17	35956391	rs12944821	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,27:32:75:0.360:2	./.	0/1:37,47:32:84:0.560:2	./.	0/1:34,28:32:62:0.452:2	./.
chr17	35981285	rs34337635	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,43:31:84:0.512:2	./.	./.	./.	./.	./.
chr17	35984410	rs7216445	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,6:28:18:0.333:2	0/1:5,6:31:11:0.545:2	./.	0/1:0,18:30:18:1.00:2	0/1:9,9:31:18:0.500:2	0/1:17,14:31:31:0.452:2	0/1:2,16:30:18:0.889:2	0/1:1,21:29:22:0.955:2	0/1:23,9:31:32:0.281:2	0/1:24,5:30:29:0.172:2	0/1:17,22:29:39:0.564:2
chr17	35988672	rs7224513	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,9:31:30:0.300:2	0/1:5,12:31:17:0.706:2	0/1:0,5:31:5:1.00:2	0/1:0,36:31:36:1.00:2	0/1:7,9:31:16:0.563:2	0/1:24,10:30:34:0.294:2	0/1:0,31:32:31:1.00:2	0/1:0,38:31:38:1.00:2	0/1:12,14:31:26:0.538:2	0/1:21,10:31:31:0.323:2	0/1:26,17:32:43:0.395:2
chr17	36003359	rs3813910	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,17:30:27:0.630:2	0/1:5,8:33:13:0.615:2	0/1:0,3:32:3:1.00:2	0/1:0,48:32:48:1.00:2	0/1:24,15:31:39:0.385:2	0/1:0,29:31:29:1.00:2	0/1:1,36:32:37:0.973:2	0/1:0,34:32:34:1.00:2	0/1:24,11:33:35:0.314:2	0/1:17,16:29:33:0.485:2	0/1:12,15:32:27:0.556:2
chr17	36047417	rs3110641	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,15:32:28:0.536:2	0/1:12,5:31:17:0.294:2	0/1:0,3:33:3:1.00:2	0/1:0,33:32:33:1.00:2	0/1:15,22:32:37:0.595:2	0/1:20,16:32:36:0.444:2	0/1:0,35:31:35:1.00:2	0/1:0,37:32:37:1.00:2	0/1:22,12:32:34:0.353:2	0/1:13,17:31:30:0.567:2	0/1:14,27:31:41:0.659:2
chr17	36070591	.	T	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:62,11:31:73:0.151:2	./.	./.	0/1:96,10:29:106:0.094:2	0/1:73,9:28:82:0.110:2	0/1:77,8:31:85:0.094:2	0/1:64,8:29:72:0.111:2	0/1:97,16:31:113:0.142:2	0/1:77,17:30:94:0.181:2	0/1:67,11:30:78:0.141:2	0/1:68,8:29:76:0.105:2
chr17	36070592	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,6:31:103:0.058:2	./.	./.	./.	./.	./.	./.	./.
chr17	36288653	rs199547231	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:166,24:33:190:0.126:2	0/1:165,25:32:190:0.132:2	./.	./.	./.	0/1:141,38:33:179:0.212:2	./.	0/1:165,22:32:187:0.118:2	./.	./.	./.
chr17	36288683	.	G	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,7:33:192:0.036:2	./.	0/1:175,9:33:184:0.049:2	./.	0/1:178,7:33:185:0.038:2	./.	./.	0/1:172,7:31:179:0.039:2
chr17	36288688	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,6:27:186:0.032:2	./.	./.	./.
chr17	36343943	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:90,4:31:94:0.043:2	0/1:179,4:32:183:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr17	36343973	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:158,31:32:189:0.164:2	0/1:166,27:32:193:0.140:2	./.	./.	./.	0/1:151,33:33:184:0.179:2	./.	0/1:160,23:31:183:0.126:2	./.	./.	./.
chr17	36454569	rs370995176	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,9:32:98:0.092:2	./.	./.	./.	./.	./.	./.	./.
chr17	36474601	rs59939216	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,71:32:175:0.406:2	0/1:63,41:32:104:0.394:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	36478388	rs73302948	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,16:32:23:0.696:2	0/1:11,12:31:23:0.522:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	36478450	rs34749623	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,19:30:34:0.559:2	./.	./.	./.	0/1:45,26:30:71:0.366:2	0/1:16,25:31:41:0.610:2	./.	./.
chr17	36482732	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:32:90:0.044:2	./.	./.
chr17	36483522	rs62073368	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,4:33:16:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	36484067	rs72832276	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,14:29:27:0.519:2	./.	./.	./.
chr17	36485605	rs150125328	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,30:31:69:0.435:2	./.
chr17	36485753	rs35803744	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:28,46:33:74:0.622:2	0/1:34,18:32:52:0.346:2	./.	0/1:49,59:32:108:0.546:2	./.	./.	./.	0/1:55,55:32:110:0.500:2	0/1:54,37:33:91:0.407:2	./.	./.
chr17	36485772	rs138451517	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,37:32:89:0.416:2	./.	./.	0/1:64,37:31:101:0.366:2	0/1:67,47:32:114:0.412:2
chr17	36485998	rs149252987	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,41:31:74:0.562:2	0/1:26,15:31:41:0.366:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	36486004	rs55727040	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:33,37:28:70:0.529:2	0/1:27,14:28:41:0.341:2	./.	0/1:37,37:28:74:0.500:2	./.	./.	./.	0/1:85,62:28:147:0.422:2	0/1:59,43:29:102:0.422:2	./.	./.
chr17	36486802	rs72832277	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:18,11:31:29:0.379:2	0/1:9,6:32:15:0.400:2	./.	0/1:24,32:30:56:0.571:2	./.	./.	./.	0/1:15,23:32:38:0.605:2	0/1:19,21:31:40:0.525:2	./.	./.
chr17	36493598	rs9894059	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:15,13:32:28:0.464:2	0/1:7,6:31:13:0.462:2	./.	0/1:13,11:32:24:0.458:2	./.	./.	./.	0/1:16,14:32:30:0.467:2	0/1:18,6:33:24:0.250:2	./.	./.
chr17	36498948	rs143624972	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,56:31:111:0.505:2	./.	./.	./.
chr17	36508385	rs41377745	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.
chr17	36622446	rs62074684	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,9:31:20:0.450:2	./.	./.	./.	./.	./.	./.	./.
chr17	36622482	rs8075324	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,13:32:13:1.00:2	./.	0/1:19,10:31:29:0.345:2	0/1:0,14:32:14:1.00:2	0/1:0,13:29:13:1.00:2	0/1:10,9:33:19:0.474:2	0/1:14,9:33:23:0.391:2	0/1:8,8:30:16:0.500:2
chr17	36628191	rs199655106	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:75,9:31:84:0.107:2	0/1:35,5:32:40:0.125:2	./.	0/1:90,12:31:102:0.118:2	0/1:79,10:31:89:0.112:2	./.	0/1:87,4:30:91:0.044:2	./.	0/1:119,5:33:124:0.040:2	0/1:79,19:32:98:0.194:2	0/1:108,9:33:117:0.077:2
chr17	36635721	rs7405920	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,151:31:152:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,150:31:150:1.00:2	0/1:2,141:31:143:0.986:2	0/1:0,168:31:168:1.00:2	0/1:0,192:31:192:1.00:2	0/1:108,88:32:197:0.449:2	0/1:0,159:33:159:1.00:2	0/1:0,132:32:132:1.00:2	0/1:0,140:32:140:1.00:2
chr17	36636008	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,6:34:194:0.031:2	./.	./.	./.	0/1:179,12:32:191:0.063:2	0/1:164,15:33:179:0.084:2	./.	./.
chr17	36636037	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,5:33:155:0.032:2
chr17	36646386	rs9891156	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,146:30:146:1.00:2	0/1:0,103:29:103:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,163:30:163:1.00:2	0/1:0,179:30:179:1.00:2	0/1:0,175:30:175:1.00:2	0/1:0,170:30:170:1.00:2	0/1:96,69:29:165:0.418:2	0/1:0,159:31:159:1.00:2	0/1:0,157:29:157:1.00:2	0/1:0,139:30:139:1.00:2
chr17	36646726	rs117469511	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:114,79:32:193:0.409:2	0/1:118,39:32:157:0.248:2	0/1:18,20:31:38:0.526:2	0/1:129,64:32:193:0.332:2	0/1:154,42:30:196:0.214:2	0/1:150,43:31:193:0.223:2	0/1:147,51:31:198:0.258:2	0/1:163,34:31:197:0.173:2	0/1:151,38:32:189:0.201:2	0/1:137,58:32:195:0.297:2	0/1:162,34:31:196:0.173:2
chr17	36654005	rs35388621	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,5:32:16:0.313:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	36667022	rs15537	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	36700163	rs35262222	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,22:32:44:0.500:2	0/1:9,8:31:17:0.471:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	36704829	rs56321748	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,11:32:17:0.647:2	0/1:36,28:32:64:0.438:2	0/1:52,32:32:84:0.381:2	./.	./.	./.	./.	0/1:31,18:30:49:0.367:2	./.
chr17	36704900	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,3:33:34:0.088:2	./.
chr17	36717894	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr17	36830562	rs79676758	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.
chr17	36861983	rs17855918	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,13:32:13:1.00:2	0/1:0,3:33:3:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,17:29:17:1.00:2
chr17	36869336	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:30:73:0.055:2	./.	./.	./.	./.	./.
chr17	36873149	rs9892493	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,33:33:75:0.440:2	./.	./.	0/1:42,37:32:79:0.468:2	./.	./.	./.	./.
chr17	36875827	rs62620198	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,32:28:76:0.421:2	./.	0/1:42,27:29:69:0.391:2	./.	./.	./.	./.
chr17	36876973	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,4:30:90:0.044:2	./.	./.	./.	./.	./.	./.
chr17	36889559	rs2879097	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,25:31:64:0.391:2	0/1:0,63:31:63:1.00:2	0/1:34,20:31:54:0.370:2	0/1:43,23:30:66:0.348:2	0/1:51,35:30:86:0.407:2	0/1:22,35:32:57:0.614:2	./.	./.
chr17	36894839	rs1138349	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,8:31:8:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,2:31:2:1.00:2	0/1:3,4:32:7:0.571:2	./.	./.	0/1:13,7:29:20:0.350:2	./.	./.	0/1:0,8:32:8:1.00:2	0/1:0,11:32:11:1.00:2
chr17	36894851	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	36895514	rs72819704	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,25:32:42:0.595:2
chr17	36909061	rs228274	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:32:70:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,9:31:9:1.00:2	0/1:59,35:32:94:0.372:2	0/1:0,100:32:100:1.00:2	0/1:66,41:32:107:0.383:2	0/1:62,62:32:124:0.500:2	0/1:2,103:32:105:0.981:2	0/1:0,87:33:87:1.00:2	0/1:1,78:32:79:0.987:2	0/1:0,67:32:67:1.00:2
chr17	36909499	rs4907	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,63:32:130:0.485:2	./.	./.
chr17	36909568	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,5:29:136:0.037:2	./.	./.	./.
chr17	36926731	rs228289	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,61:32:157:0.389:2	0/1:94,83:33:177:0.469:2	0/1:89,78:32:167:0.467:2	0/1:95,72:33:167:0.431:2	./.	./.	./.	./.
chr17	36926742	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,9:23:181:0.050:2	./.
chr17	36926767	rs228290	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,51:30:128:0.398:2	0/1:74,63:30:137:0.460:2	0/1:64,69:30:133:0.519:2	0/1:84,47:30:131:0.359:2	./.	./.	./.	./.
chr17	36927442	rs61749872	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,33:32:57:0.579:2
chr17	36991591	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:29:105:0.038:2	./.	./.
chr17	36997461	rs7210156	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:19,32:32:51:0.627:2	0/1:15,5:32:20:0.250:2	0/1:3,4:33:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	36997503	rs61752602	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,17:29:40:0.425:2	./.	./.	./.	./.	./.	0/1:19,22:28:41:0.537:2	./.
chr17	37054772	rs1130638	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:17,8:32:25:0.320:2	0/1:15,5:31:20:0.250:2	./.	0/1:49,23:31:72:0.319:2	./.	0/1:26,27:30:53:0.509:2	0/1:43,28:31:71:0.394:2	./.	./.	0/1:32,24:32:56:0.429:2	./.
chr17	37070658	rs525989	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,22:30:62:0.355:2	0/1:24,17:28:41:0.415:2	0/1:10,4:28:14:0.286:2	0/1:0,63:30:63:1.00:2	0/1:0,34:29:34:1.00:2	0/1:42,23:32:65:0.354:2	0/1:0,41:31:41:1.00:2	0/1:1,40:29:41:0.976:2	0/1:55,21:31:76:0.276:2	0/1:1,44:30:45:0.978:2	0/1:1,37:31:38:0.974:2
chr17	37074932	rs3744075	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,35:31:67:0.522:2	./.	./.	./.	./.
chr17	37094870	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:33:45:0.089:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	37099088	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:34:121:0.033:2	./.	./.
chr17	37101380	rs9906595	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,33:29:62:0.532:2	0/1:35,17:28:52:0.327:2	./.	0/1:2,95:29:97:0.979:2	0/1:0,42:28:42:1.00:2	0/1:0,88:28:88:1.00:2	0/1:0,73:29:73:1.00:2	0/1:51,45:27:96:0.469:2	0/1:0,84:30:84:1.00:2	0/1:0,60:29:60:1.00:2	0/1:51,53:29:104:0.510:2
chr17	37224211	rs75117355	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:49,38:31:87:0.437:2	0/1:32,27:32:59:0.458:2	./.	0/1:69,52:31:121:0.430:2	./.	./.	./.	0/1:85,79:32:164:0.482:2	./.	./.	./.
chr17	37228691	rs62076605	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,30:33:62:0.484:2	./.	./.	./.	./.	./.
chr17	37228765	rs9907595	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,37:30:67:0.552:2	0/1:15,20:30:35:0.571:2	0/1:0,3:29:3:1.00:2	0/1:58,49:30:107:0.458:2	0/1:34,21:29:55:0.382:2	0/1:0,85:29:85:1.00:2	0/1:41,34:30:75:0.453:2	0/1:0,78:31:78:1.00:2	0/1:0,103:32:103:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,60:30:60:1.00:2
chr17	37243927	rs12602945	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,36:31:73:0.493:2	0/1:39,46:32:85:0.541:2	0/1:40,19:32:59:0.322:2	./.	0/1:33,33:31:66:0.500:2	0/1:28,39:32:67:0.582:2	0/1:26,20:31:46:0.435:2	./.
chr17	37262117	rs17705646	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,26:30:51:0.510:2	./.	./.	./.	./.	./.
chr17	37316988	rs16522	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,23:27:59:0.390:2	0/1:23,14:27:37:0.378:2	0/1:3,7:29:10:0.700:2	0/1:33,31:28:64:0.484:2	./.	./.	./.	0/1:40,59:28:99:0.596:2	./.	./.	0/1:38,47:27:85:0.553:2
chr17	37319029	rs544198	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,32:33:90:0.356:2	0/1:36,17:33:53:0.321:2	0/1:4,4:32:8:0.500:2	0/1:69,56:32:125:0.448:2	0/1:87,59:33:146:0.404:2	./.	./.	0/1:99,67:32:167:0.404:2	0/1:89,55:33:144:0.382:2	./.	0/1:57,38:32:95:0.400:2
chr17	37319065	rs657672	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,37:31:87:0.425:2	0/1:33,16:32:49:0.327:2	0/1:5,5:32:10:0.500:2	0/1:62,42:31:104:0.404:2	./.	./.	./.	0/1:76,49:32:125:0.392:2	./.	./.	0/1:56,31:31:87:0.356:2
chr17	37319103	rs657723	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,26:32:61:0.426:2	0/1:15,13:32:28:0.464:2	0/1:7,4:28:11:0.364:2	0/1:38,22:32:60:0.367:2	0/1:43,23:32:66:0.348:2	./.	./.	0/1:47,26:33:73:0.356:2	0/1:53,30:34:83:0.361:2	./.	0/1:42,16:33:58:0.276:2
chr17	37321961	rs593772	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:13,16:31:29:0.552:2	0/1:6,8:32:14:0.571:2	./.	./.	./.	./.	./.	0/1:33,35:31:68:0.515:2	./.	./.	0/1:12,28:33:40:0.700:2
chr17	37331645	rs199798694	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,11:31:32:0.344:2	0/1:16,11:28:27:0.407:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	37331782	rs116613643	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,15:30:28:0.536:2	./.	./.	./.	./.	./.	./.
chr17	37333572	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:34:43:0.093:2	./.
chr17	37334243	rs3744353	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,8:31:23:0.348:2	0/1:90,50:30:141:0.357:2	./.	./.	./.	./.	./.	./.	./.
chr17	37370512	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:32:134:0.030:2	./.	./.	./.
chr17	37374209	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,5:30:72:0.069:2	./.
chr17	37564674	rs138417070	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:32:147:0.027:2
chr17	37571569	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:33:60:0.067:2	./.	./.
chr17	37579984	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:32:136:0.029:2	./.	./.
chr17	37686925	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,23:29:39:0.590:2	./.	./.	./.
chr17	37785810	rs145932715	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,13:31:24:0.542:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	37814080	rs1877031	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:67,59:33:126:0.468:2	0/1:38,53:32:91:0.582:2	0/1:0,26:32:26:1.00:2	0/1:3,140:32:143:0.979:2	0/1:66,64:31:130:0.492:2	0/1:1,122:32:123:0.992:2	0/1:81,52:31:133:0.391:2	0/1:75,60:32:135:0.444:2	0/1:74,61:32:136:0.452:2	0/1:83,66:33:149:0.443:2	0/1:77,61:33:138:0.442:2
chr17	37815024	rs142935105	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,42:33:77:0.545:2	./.	./.	./.	./.	./.	./.	./.
chr17	37815304	rs11556624	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,52:30:109:0.477:2	./.
chr17	37819092	rs78029334	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:29:78:0.051:2	./.
chr17	37822174	rs45578741	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,16:29:46:0.356:2
chr17	37822311	rs1053651	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,7:30:20:0.350:2	0/1:6,3:31:9:0.333:2	0/1:0,3:29:3:1.00:2	0/1:0,30:31:30:1.00:2	0/1:18,13:32:31:0.419:2	0/1:0,23:31:23:1.00:2	0/1:11,13:33:24:0.542:2	0/1:10,16:32:26:0.615:2	0/1:15,9:34:24:0.375:2	0/1:9,6:31:15:0.400:2	0/1:11,7:27:18:0.389:2
chr17	37826316	rs34341496	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	37829129	rs2247862	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,15:31:34:0.441:2	0/1:14,18:29:32:0.563:2	./.	0/1:1,69:30:70:0.986:2	0/1:57,35:29:92:0.380:2	0/1:0,57:29:57:1.00:2	0/1:50,20:29:70:0.286:2	0/1:87,4:31:91:0.044:2	./.	0/1:27,19:30:46:0.413:2	0/1:22,15:29:37:0.405:2
chr17	37829899	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:32:85:0.047:2	./.	./.	./.	./.	./.
chr17	37830900	rs2941504	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,20:32:36:0.556:2	0/1:3,14:32:17:0.824:2	0/1:0,3:32:3:1.00:2	0/1:0,35:33:35:1.00:2	0/1:24,29:32:53:0.547:2	0/1:0,36:32:36:1.00:2	0/1:20,12:33:32:0.375:2	./.	./.	0/1:15,16:33:31:0.516:2	0/1:9,10:33:19:0.526:2
chr17	37879585	rs1801201	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,65:28:143:0.455:2	./.	./.	./.	./.	./.	./.
chr17	37879588	rs1136201	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,31:28:73:0.431:2	0/1:41,12:27:53:0.226:2	0/1:0,18:31:18:1.00:2	0/1:62,73:28:135:0.541:2	0/1:82,66:29:149:0.446:2	./.	0/1:94,73:28:167:0.437:2	./.	./.	0/1:55,54:30:109:0.495:2	./.
chr17	37884037	rs1058808	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,24:31:51:0.471:2	0/1:17,27:32:44:0.614:2	0/1:0,5:32:5:1.00:2	0/1:0,83:32:83:1.00:2	0/1:18,27:32:45:0.600:2	0/1:0,45:32:45:1.00:2	0/1:23,34:32:57:0.596:2	./.	./.	0/1:29,25:32:54:0.463:2	0/1:31,32:32:63:0.508:2
chr17	37898909	rs36079893	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	37901525	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:32:152:0.026:2	./.	./.	./.	./.
chr17	37922259	rs907092	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,38:32:87:0.437:2	0/1:32,20:32:52:0.385:2	0/1:2,5:33:7:0.714:2	0/1:1,129:32:130:0.992:2	0/1:80,62:32:142:0.437:2	0/1:74,56:31:130:0.431:2	0/1:58,49:32:107:0.458:2	./.	./.	./.	0/1:64,55:32:119:0.462:2
chr17	38020419	rs1453559	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,11:33:24:0.458:2	0/1:13,7:32:20:0.350:2	0/1:0,3:24:3:1.00:2	0/1:1,29:32:30:0.967:2	0/1:28,15:30:43:0.349:2	0/1:23,18:32:41:0.439:2	0/1:15,8:31:23:0.348:2	./.	./.	./.	0/1:19,16:31:35:0.457:2
chr17	38020421	rs117278702	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,29:32:34:0.853:2	./.
chr17	38024626	rs11557466	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,5:32:16:0.313:2	0/1:3,3:32:6:0.500:2	0/1:0,10:30:10:1.00:2	0/1:0,42:32:42:1.00:2	0/1:9,13:31:22:0.591:2	0/1:14,19:30:33:0.576:2	0/1:6,15:32:21:0.714:2	./.	./.	./.	0/1:4,6:31:10:0.600:2
chr17	38028634	rs11557467	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,22:33:52:0.423:2	0/1:17,11:32:28:0.393:2	0/1:0,4:32:4:1.00:2	0/1:0,44:31:44:1.00:2	0/1:8,19:30:27:0.704:2	0/1:31,25:31:56:0.446:2	0/1:32,20:32:52:0.385:2	./.	./.	./.	0/1:40,36:32:76:0.474:2
chr17	38031674	rs10852935	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,7:33:17:0.412:2	0/1:11,6:32:17:0.353:2	./.	0/1:0,35:32:35:1.00:2	0/1:19,10:31:29:0.345:2	0/1:15,16:32:31:0.516:2	0/1:16,7:32:23:0.304:2	./.	./.	./.	0/1:32,16:32:48:0.333:2
chr17	38062196	rs2305480	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,38:30:78:0.487:2	0/1:38,24:30:62:0.387:2	0/1:0,9:30:9:1.00:2	0/1:2,79:29:81:0.975:2	0/1:44,49:28:93:0.527:2	0/1:51,37:29:88:0.420:2	0/1:44,46:29:90:0.511:2	./.	./.	./.	0/1:50,36:27:86:0.419:2
chr17	38062217	rs2305479	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,39:32:91:0.429:2	0/1:43,27:31:70:0.386:2	0/1:0,14:31:14:1.00:2	0/1:0,89:31:89:1.00:2	0/1:41,53:30:94:0.564:2	0/1:53,45:30:98:0.459:2	0/1:48,55:30:103:0.534:2	./.	./.	./.	0/1:56,44:31:100:0.440:2
chr17	38064405	rs11078927	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:8,14:31:22:0.636:2	0/1:10,14:32:24:0.583:2	0/1:0,2:31:2:1.00:2	0/1:0,41:31:41:1.00:2	0/1:9,5:28:14:0.357:2	0/1:20,15:29:35:0.429:2	0/1:15,7:31:22:0.318:2	./.	./.	./.	0/1:33,25:32:58:0.431:2
chr17	38064469	rs11078928	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,12:33:26:0.462:2	0/1:6,10:33:16:0.625:2	0/1:0,4:34:4:1.00:2	0/1:0,55:33:55:1.00:2	0/1:11,5:31:16:0.313:2	0/1:20,21:31:41:0.512:2	0/1:10,12:32:22:0.545:2	./.	./.	./.	0/1:23,25:33:48:0.521:2
chr17	38068751	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:33:104:0.038:2
chr17	38121993	rs3894194	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:25,27:31:52:0.519:2	0/1:13,17:32:30:0.567:2	./.	./.	0/1:40,18:31:58:0.310:2	0/1:43,17:32:60:0.283:2	0/1:27,21:30:48:0.438:2	0/1:5,54:32:59:0.915:2	0/1:2,58:32:60:0.967:2	0/1:1,48:32:49:0.980:2	./.
chr17	38122099	rs149553751	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,23:30:53:0.434:2	./.
chr17	38122680	rs7212938	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,42:32:88:0.477:2	0/1:24,12:32:36:0.333:2	0/1:0,5:32:5:1.00:2	0/1:0,79:31:79:1.00:2	0/1:59,31:30:90:0.344:2	0/1:54,40:30:94:0.426:2	0/1:49,48:31:98:0.495:2	./.	./.	./.	0/1:48,26:31:74:0.351:2
chr17	38122686	rs7212944	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,36:30:71:0.507:2	0/1:55,27:30:82:0.329:2	0/1:53,39:30:92:0.424:2	0/1:49,43:30:92:0.467:2	./.	./.	./.	0/1:46,20:30:66:0.303:2
chr17	38131187	rs56030650	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,24:29:41:0.585:2	0/1:13,13:32:26:0.500:2	./.	0/1:29,20:30:49:0.408:2	0/1:23,31:31:54:0.574:2	0/1:21,17:30:38:0.447:2	0/1:31,26:31:57:0.456:2	0/1:0,50:31:50:1.00:2	0/1:0,52:32:52:1.00:2	0/1:27,20:29:47:0.426:2	./.
chr17	38137364	rs3087852	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,13:29:18:0.722:2	0/1:8,4:29:12:0.333:2	0/1:8,10:30:18:0.556:2	./.	./.	0/1:5,7:31:12:0.583:2	0/1:10,3:32:13:0.231:2
chr17	38146154	rs9916279	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:27:6:0.500:2	./.	0/1:31,13:29:44:0.295:2	./.	./.	./.	0/1:21,23:30:44:0.523:2	./.	./.
chr17	38151497	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:33:119:0.034:2	./.	./.
chr17	38173143	rs25645	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:31:7:0.571:2	./.	./.	0/1:25,20:30:45:0.444:2	0/1:21,25:31:46:0.543:2	./.	./.	0/1:18,25:31:43:0.581:2	0/1:21,21:30:42:0.500:2
chr17	38175866	rs11555254	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:32:12:0.583:2	./.	0/1:82,59:31:142:0.418:2	./.	./.	./.	0/1:54,49:32:103:0.476:2	./.	./.
chr17	38179492	rs2302777	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,48:32:100:0.480:2	0/1:56,61:33:117:0.521:2	./.	./.	0/1:51,41:33:92:0.446:2	0/1:53,57:32:110:0.518:2
chr17	38186106	rs11555255	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:32:13:0.462:2	./.	0/1:72,77:32:149:0.517:2	./.	./.	./.	0/1:83,72:33:155:0.465:2	./.	./.
chr17	38240216	rs2230701	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,26:32:66:0.394:2	./.	./.	./.	./.
chr17	38252744	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.	./.	./.	./.	./.	./.
chr17	38282624	rs28526298	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,22:32:58:0.379:2	./.
chr17	38290099	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:32:145:0.028:2	./.	./.	./.	./.
chr17	38320310	rs185162031	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,4:33:16:0.250:2	./.	./.
chr17	38320381	rs140375987	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,5:32:7:0.714:2	./.
chr17	38324194	rs147048896	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,35:30:69:0.507:2	./.	./.	./.	./.	./.	./.	./.
chr17	38340487	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,4:24:38:0.105:2	./.	./.	./.	./.	./.	./.
chr17	38349963	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:32:111:0.036:2	./.	./.
chr17	38445837	rs142289528	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,13:31:33:0.394:2	./.	./.	./.	./.
chr17	38447572	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,5:28:124:0.040:2
chr17	38451641	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:176,4:32:180:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr17	38457151	rs13706	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:30:9:0.556:2	./.	./.	./.	./.	./.	0/1:105,92:32:197:0.467:2	0/1:58,59:32:117:0.504:2	./.
chr17	38507751	rs73983038	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,6:25:17:0.353:2	./.
chr17	38510583	rs77633370	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,76:32:152:0.500:2	./.	./.	./.
chr17	38520338	rs111474879	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,26:30:65:0.400:2	0/1:21,20:32:41:0.488:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	38545824	rs11540720	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,17:31:32:0.531:2	./.
chr17	38547868	rs34300454	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,38:31:94:0.404:2	./.
chr17	38548586	rs34270904	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,36:33:74:0.486:2	./.
chr17	38551788	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,4:32:78:0.051:2	./.	./.	./.	./.	./.	./.	./.
chr17	38552556	rs1141364	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,6:28:21:0.286:2
chr17	38555188	rs61732514	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:33:11:0.727:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	38567453	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:30:45:0.089:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	38634605	rs17472276	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,34:30:70:0.486:2	./.	./.	./.	./.	./.
chr17	38640744	rs2290207	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,5:31:12:0.417:2	0/1:5,4:32:9:0.444:2	./.	./.	0/1:12,5:32:17:0.294:2	0/1:12,8:31:20:0.400:2	./.	0/1:13,17:30:30:0.567:2	./.	0/1:12,5:30:17:0.294:2	./.
chr17	38643385	rs8071312	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,73:33:136:0.537:2	./.	./.
chr17	38643607	rs34733633	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,74:30:155:0.477:2	./.	./.	./.	./.	./.	./.	./.
chr17	38645125	rs3764424	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:27,32:33:59:0.542:2	0/1:27,17:33:44:0.386:2	0/1:7,5:32:12:0.417:2	./.	0/1:72,54:32:126:0.429:2	0/1:80,49:32:129:0.380:2	./.	0/1:63,72:32:135:0.533:2	./.	0/1:41,22:33:63:0.349:2	./.
chr17	38711752	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:33:52:0.077:2	./.	./.
chr17	38715186	rs2228015	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,22:33:46:0.478:2	./.
chr17	38788543	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:33:87:0.046:2	./.	./.	./.	./.
chr17	38788560	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:34:83:0.048:2	./.	./.	./.	./.
chr17	38812775	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,6:33:118:0.051:2	./.	./.
chr17	38813638	rs150536527	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,23:32:63:0.365:2	0/1:16,20:32:36:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	38855772	rs2462961	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,64:29:115:0.557:2	0/1:58,36:30:94:0.383:2	0/1:0,24:30:24:1.00:2	0/1:84,77:29:161:0.478:2	0/1:1,158:30:159:0.994:2	0/1:0,165:29:165:1.00:2	./.	0/1:80,102:30:182:0.560:2	./.	0/1:2,143:30:145:0.986:2	0/1:85,83:28:168:0.494:2
chr17	38857446	rs874889	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,56:31:115:0.487:2	0/1:29,25:30:54:0.463:2	0/1:0,15:30:15:1.00:2	0/1:89,89:31:178:0.500:2	0/1:0,129:31:129:1.00:2	0/1:2,128:30:130:0.985:2	./.	0/1:108,55:31:163:0.337:2	./.	0/1:0,110:31:110:1.00:2	0/1:74,68:31:142:0.479:2
chr17	38906718	rs72821891	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,67:31:140:0.479:2	./.	./.	./.	./.	./.
chr17	38911212	rs12951078	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:1,36:32:37:0.973:2	./.	0/1:27,55:32:82:0.671:2	./.	./.	0/1:42,23:32:65:0.354:2	0/1:44,33:31:77:0.429:2	0/1:28,30:33:58:0.517:2	./.	0/1:0,85:32:85:1.00:2
chr17	38911327	rs35076248	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,24:33:45:0.533:2	./.	./.	./.	0/1:28,24:29:52:0.462:2
chr17	38911363	rs12951399	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,44:32:44:1.00:2	0/1:1,27:32:28:0.964:2	./.	0/1:27,27:31:54:0.500:2	./.	./.	./.	0/1:32,15:31:47:0.319:2	0/1:29,26:31:55:0.473:2	./.	0/1:34,20:32:54:0.370:2
chr17	38927944	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:177,4:33:181:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr17	38928014	rs9898164	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,65:29:153:0.425:2	./.	./.	./.	0/1:69,67:31:136:0.493:2
chr17	38933307	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:31:70:0.057:2	./.	./.	./.	./.
chr17	38935812	rs981684	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,65:32:65:1.00:2	0/1:0,46:32:46:1.00:2	./.	0/1:39,78:32:117:0.667:2	./.	./.	0/1:64,71:32:135:0.526:2	0/1:74,57:32:131:0.435:2	0/1:57,68:33:125:0.544:2	./.	0/1:0,118:31:118:1.00:2
chr17	38935876	rs17558532	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	0/1:12,19:30:31:0.613:2	0/1:21,24:31:45:0.533:2	./.	./.	./.	./.	./.
chr17	38935980	rs76225348	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,22:32:43:0.512:2	./.	./.	./.
chr17	38936659	rs17558560	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:32:81:1.00:2	0/1:0,27:31:27:1.00:2	0/1:7,3:32:10:0.300:2	0/1:29,28:31:57:0.491:2	./.	./.	./.	0/1:51,36:31:87:0.414:2	0/1:67,25:31:92:0.272:2	./.	0/1:53,25:31:78:0.321:2
chr17	38938316	rs12453124	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:31:11:0.364:2
chr17	38938557	rs67771170	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,16:28:47:0.356:2	./.	0/1:21,19:28:40:0.475:2	0/1:32,29:28:61:0.475:2	./.	0/1:24,18:30:42:0.429:2	./.
chr17	38938591	rs2469826	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,18:29:34:0.529:2	0/1:18,11:29:29:0.379:2	./.	0/1:0,15:32:15:1.00:2	0/1:26,27:30:53:0.509:2	0/1:20,14:32:34:0.412:2	0/1:17,22:30:39:0.564:2	0/1:26,13:29:39:0.333:2
chr17	38950250	rs372865484	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,5:32:89:0.056:2	./.	./.	0/1:82,5:29:87:0.057:2
chr17	38950272	rs2250671	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:29:3:1.00:2	0/1:2,80:30:82:0.976:2	0/1:3,47:29:50:0.940:2	0/1:2,80:30:82:0.976:2	0/1:5,52:29:57:0.912:2	0/1:34,42:29:76:0.553:2	0/1:46,44:31:90:0.489:2	0/1:45,22:30:67:0.328:2	0/1:4,70:28:74:0.946:2
chr17	38955173	rs7222207	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,10:31:16:0.625:2	./.	0/1:65,71:31:136:0.522:2	./.	0/1:94,56:31:150:0.373:2	./.	./.	0/1:62,80:31:143:0.563:2	./.
chr17	38955961	rs4624233	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,14:31:34:0.412:2	0/1:21,23:31:44:0.523:2	0/1:36,20:31:56:0.357:2	./.	./.	0/1:23,19:32:42:0.452:2	./.	0/1:8,15:32:23:0.652:2
chr17	38955991	rs7209228	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:16,14:32:30:0.467:2	0/1:11,9:30:20:0.450:2	./.	./.	./.	./.	0/1:22,28:30:50:0.560:2	0/1:31,27:29:58:0.466:2	./.	./.	0/1:12,5:32:17:0.294:2
chr17	38977316	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:34:122:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	38978462	rs77919366	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,18:30:33:0.545:2	./.	0/1:25,20:30:46:0.444:2	./.	./.	0/1:9,11:29:20:0.550:2	./.
chr17	38978536	rs4261597	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,51:31:51:1.00:2
chr17	38990780	rs17474506	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,40:32:76:0.526:2	./.
chr17	38990834	rs2240078	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,129:32:129:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,148:33:148:1.00:2	0/1:0,192:32:193:1.00:2	0/1:0,168:32:169:1.00:2	0/1:0,189:32:189:1.00:2	0/1:1,190:32:191:0.995:2	0/1:0,165:33:165:1.00:2	0/1:0,139:33:139:1.00:2	0/1:0,170:32:170:1.00:2
chr17	38991003	rs10558	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,8:32:21:0.381:2	0/1:76,62:32:138:0.449:2	0/1:43,43:32:86:0.500:2	0/1:95,60:32:155:0.387:2	./.	./.	0/1:73,63:33:136:0.463:2	./.	0/1:101,71:32:172:0.413:2
chr17	38991032	rs6694	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,59:32:116:0.509:2	0/1:44,28:31:72:0.389:2	0/1:0,20:30:20:1.00:2	0/1:73,56:31:129:0.434:2	0/1:0,69:31:69:1.00:2	0/1:100,51:31:151:0.338:2	0/1:1,70:31:71:0.986:2	0/1:75,72:31:147:0.490:2	0/1:72,57:32:129:0.442:2	0/1:52,31:32:83:0.373:2	0/1:2,135:30:137:0.985:2
chr17	38991052	rs1044806	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:62,41:30:103:0.398:2	0/1:42,22:30:64:0.344:2	./.	./.	./.	./.	0/1:23,36:29:59:0.610:2	0/1:68,58:29:126:0.460:2	./.	./.	0/1:47,69:29:116:0.595:2
chr17	38991053	rs3169915	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:62,42:31:104:0.404:2	0/1:41,22:31:63:0.349:2	./.	./.	./.	./.	0/1:23,36:31:59:0.610:2	0/1:68,58:30:126:0.460:2	./.	./.	0/1:48,69:31:117:0.590:2
chr17	38992106	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:32:158:0.025:2	./.	./.
chr17	38992520	rs61161037	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:30:11:0.455:2	./.	0/1:9,10:31:19:0.526:2	./.	./.	./.	./.	./.
chr17	39023381	rs17566772	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:29:8:0.750:2	./.	0/1:3,4:32:7:0.571:2	./.	./.	./.	./.	./.
chr17	39023396	rs11650915	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:29:6:0.667:2	0/1:7,4:33:11:0.364:2	0/1:1,2:32:3:0.667:2	./.
chr17	39041052	rs7212483	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,50:31:130:0.385:2	./.	0/1:70,69:30:139:0.496:2	./.	./.	./.	./.	./.
chr17	39041309	rs17567558	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,13:25:32:0.419:2	./.	0/1:22,19:24:41:0.463:2	./.	./.	./.	./.	./.
chr17	39081713	rs8037	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,104:30:192:0.542:2	0/1:89,76:30:166:0.461:2	0/1:17,15:31:32:0.469:2	0/1:1,189:30:190:0.995:2	0/1:101,94:30:195:0.482:2	0/1:3,181:30:184:0.984:2	0/1:3,188:30:191:0.984:2	0/1:192,5:29:197:0.025:2	0/1:99,94:30:193:0.487:2	./.	./.
chr17	39084504	rs9257	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:89,68:31:157:0.433:2	0/1:70,31:32:102:0.307:2	0/1:20,6:33:26:0.231:2	0/1:0,191:33:192:1.00:2	0/1:103,88:32:191:0.461:2	0/1:0,186:32:186:1.00:2	0/1:2,181:32:183:0.989:2	./.	0/1:107,83:32:190:0.437:2	./.	./.
chr17	39092784	rs61745879	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,29:29:52:0.558:2	./.	./.	./.	0/1:14,31:30:45:0.689:2	./.
chr17	39114962	rs7213256	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,107:32:107:1.00:2	0/1:52,53:32:105:0.505:2	./.	0/1:63,37:32:100:0.370:2	./.	0/1:0,159:33:159:1.00:2	./.	./.
chr17	39116728	rs17843021	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,7:32:9:0.778:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	39119891	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:33:139:0.029:2
chr17	39119942	rs17843020	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,61:31:146:0.418:2	0/1:73,46:31:119:0.387:2	./.	0/1:75,67:31:142:0.472:2	./.	0/1:64,60:32:124:0.484:2	./.	./.
chr17	39122694	rs144576097	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,12:32:25:0.480:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	39122797	rs10491137	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,168:32:169:0.994:2	0/1:114,79:31:193:0.409:2	./.	0/1:97,89:32:186:0.478:2	./.	0/1:104,95:32:199:0.477:2	./.	./.
chr17	39123013	rs17645930	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,10:31:31:0.323:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	39134455	rs2271277	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,4:31:8:0.500:2	0/1:0,65:32:65:1.00:2	./.	./.	0/1:46,37:32:83:0.446:2	./.	0/1:0,74:33:74:1.00:2	./.	./.
chr17	39134528	rs16968862	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,41:31:42:0.976:2	./.	./.	./.	./.	0/1:20,27:31:47:0.574:2	./.	./.
chr17	39135084	rs8064733	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:27:2:1.00:2	0/1:0,42:30:42:1.00:2	./.	./.	0/1:31,16:30:47:0.340:2	./.	0/1:0,30:28:30:1.00:2	./.	./.
chr17	39135089	rs11649834	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	0/1:32,17:32:49:0.347:2	./.	./.	./.	./.
chr17	39135205	rs8064910	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,33:32:72:0.458:2	0/1:21,24:32:45:0.533:2	0/1:0,12:33:12:1.00:2	0/1:0,86:33:86:1.00:2	0/1:126,4:33:130:0.031:2	0/1:49,51:32:100:0.510:2	0/1:93,54:32:147:0.367:2	./.	0/1:1,78:32:79:0.987:2	0/1:50,30:32:80:0.375:2	./.
chr17	39135207	rs150812789	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,34:28:73:0.466:2	0/1:21,25:29:46:0.543:2	./.	./.	./.	0/1:47,51:29:98:0.520:2	./.	./.	./.	0/1:51,29:30:80:0.363:2	./.
chr17	39135214	rs8068970	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,13:34:13:1.00:2	0/1:1,85:33:86:0.988:2	./.	./.	0/1:95,47:33:142:0.331:2	./.	0/1:1,80:34:81:0.988:2	./.	./.
chr17	39137104	rs9908389	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,5:29:7:0.714:2	0/1:0,52:30:52:1.00:2	./.	./.	0/1:50,41:30:91:0.451:2	./.	0/1:0,50:31:50:1.00:2	./.	./.
chr17	39137154	rs721958	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:31:6:0.667:2	0/1:0,29:32:29:1.00:2	./.	./.	0/1:19,22:32:41:0.537:2	./.	0/1:0,30:33:30:1.00:2	./.	./.
chr17	39137297	rs721957	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,69:30:150:0.460:2	0/1:34,34:29:68:0.500:2	0/1:0,17:30:17:1.00:2	0/1:0,159:31:159:1.00:2	./.	0/1:81,85:30:166:0.512:2	0/1:110,83:30:193:0.430:2	./.	0/1:0,142:31:142:1.00:2	0/1:93,81:31:174:0.466:2	./.
chr17	39137387	rs2010027	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,3:32:9:0.333:2	0/1:3,67:32:70:0.957:2	./.	./.	0/1:46,42:32:88:0.477:2	./.	0/1:0,55:33:55:1.00:2	./.	./.
chr17	39138712	rs4243257	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:31:6:1.00:2	0/1:0,20:31:20:1.00:2	./.	./.	0/1:16,14:31:30:0.467:2	./.	0/1:0,29:31:29:1.00:2	./.	./.
chr17	39139348	rs16968859	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,33:29:70:0.471:2	./.	./.	./.	0/1:32,18:26:50:0.360:2	./.
chr17	39139370	rs9908304	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,3:33:12:0.250:2	0/1:0,38:32:38:1.00:2	./.	./.	0/1:37,29:32:66:0.439:2	./.	0/1:0,58:33:58:1.00:2	./.	./.
chr17	39140221	rs1510068	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:31:10:0.500:2	0/1:0,151:31:151:1.00:2	./.	./.	0/1:86,94:30:180:0.522:2	./.	0/1:0,128:31:128:1.00:2	./.	./.
chr17	39140272	rs17843015	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,60:32:115:0.526:2	./.	./.	./.	0/1:48,51:32:99:0.515:2	./.
chr17	39140417	rs1510069	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,7:32:10:0.700:2	0/1:0,93:31:93:1.00:2	./.	./.	0/1:79,63:32:142:0.444:2	./.	0/1:0,84:32:84:1.00:2	./.	./.
chr17	39150054	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,14:31:142:0.099:2	./.	./.	0/1:106,19:33:125:0.152:2	0/1:100,16:32:116:0.138:2	./.
chr17	39150167	rs12452295	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:97,76:31:173:0.439:2	0/1:46,52:31:98:0.531:2	0/1:0,37:31:37:1.00:2	./.	./.	./.	./.	./.	./.	0/1:116,57:31:173:0.329:2	./.
chr17	39150213	rs202056314	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:32:107:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	39150284	rs2010201	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:79,68:30:147:0.463:2	0/1:47,49:30:96:0.510:2	0/1:11,10:32:21:0.476:2	./.	./.	0/1:57,65:31:122:0.533:2	./.	./.	0/1:44,86:31:130:0.662:2	0/1:45,70:31:115:0.609:2	./.
chr17	39150329	rs368049744	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,8:32:108:0.074:2	./.	./.	./.	0/1:92,9:32:101:0.089:2	./.
chr17	39150357	rs1989365	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,56:33:117:0.479:2	0/1:40,33:32:73:0.452:2	0/1:15,7:31:22:0.318:2	0/1:57,43:33:100:0.430:2	./.	0/1:54,42:32:96:0.438:2	./.	./.	0/1:46,43:33:89:0.483:2	0/1:56,30:31:86:0.349:2	./.
chr17	39155881	rs3813048	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:171,4:33:175:0.023:2	./.	./.	./.	./.	0/1:131,35:31:166:0.211:2	./.	./.	0/1:108,19:33:127:0.150:2	0/1:112,26:32:138:0.188:2	./.
chr17	39155969	rs3813050	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:158,6:34:165:0.037:2	./.	./.	./.	./.	0/1:147,23:31:170:0.135:2	./.	./.	0/1:93,21:31:114:0.184:2	0/1:103,9:30:112:0.080:2	./.
chr17	39156027	rs3829598	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:79,55:32:134:0.410:2	0/1:46,31:32:77:0.403:2	0/1:9,5:33:14:0.357:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	39156067	rs9890989	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,24:31:93:0.258:2	./.	./.	0/1:79,19:27:98:0.194:2	0/1:77,33:30:110:0.300:2	./.
chr17	39156084	rs9897046	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,32:28:96:0.333:2	./.	./.	0/1:72,19:33:91:0.209:2	0/1:66,28:28:94:0.298:2	./.
chr17	39156085	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,19:32:91:0.211:2	./.	./.
chr17	39165174	rs112432710	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,7:30:15:0.467:2	0/1:89,80:30:169:0.473:2	./.	./.	./.	./.	./.	./.	./.
chr17	39183145	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,3:33:53:0.057:2	./.	./.	./.	./.	./.	./.	./.
chr17	39186031	rs8074117	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,48:31:102:0.471:2	0/1:22,33:32:55:0.600:2	0/1:8,6:31:14:0.429:2	0/1:44,51:31:95:0.537:2	./.	./.	./.	./.	0/1:40,34:32:74:0.459:2	./.	./.
chr17	39186168	rs8074887	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:15,18:32:33:0.545:2	0/1:10,15:33:25:0.600:2	./.	0/1:30,31:33:61:0.508:2	./.	./.	./.	./.	0/1:29,22:32:51:0.431:2	./.	./.
chr17	39186220	rs8073323	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:16,27:31:44:0.628:2	0/1:24,10:32:34:0.294:2	./.	0/1:32,30:31:62:0.484:2	./.	./.	./.	./.	0/1:32,21:32:53:0.396:2	./.	./.
chr17	39190680	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,5:32:55:0.091:2	./.
chr17	39190702	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:30:60:0.067:2	./.
chr17	39190758	rs62622847	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,19:32:45:0.422:2	0/1:21,6:31:27:0.222:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	39190800	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,3:32:25:0.120:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	39190801	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:27:52:0.077:2	0/1:23,3:32:26:0.115:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	39190841	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,3:32:40:0.075:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	39190918	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,5:30:99:0.051:2	./.	./.	./.	./.	./.	./.
chr17	39190943	.	A	C,G	.	PASS	AC=5,1;AF=0.278,0.056;AN=18;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9-variant10-variant11	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0/1:30:77:0.092:2	0/1:32:58:0.105:2	./.	0/1:29:95:0.116:2	0/2:30:97:0.041:2	./.	./.	./.	0/1:31:102:0.050:2	0/1:31:81:0.075:2	./.
chr17	39190953	rs78298475	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:72,8:31:80:0.100:2	0/1:51,7:31:58:0.121:2	./.	0/1:85,15:29:100:0.150:2	./.	./.	./.	./.	0/1:91,8:32:99:0.081:2	0/1:68,16:31:84:0.190:2	./.
chr17	39190954	rs71300033	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:72,8:30:80:0.100:2	0/1:50,7:31:57:0.123:2	./.	0/1:84,14:28:98:0.143:2	./.	./.	./.	./.	0/1:89,8:32:97:0.082:2	0/1:66,16:29:82:0.195:2	./.
chr17	39197176	rs3815561	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,34:32:72:0.472:2	0/1:23,19:31:42:0.452:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	39197378	rs35024033	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,23:31:49:0.469:2	./.	./.
chr17	39197393	rs201732142	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,4:31:34:0.118:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	39197499	rs3213755	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,18:30:54:0.333:2	0/1:35,19:31:54:0.352:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	39197538	rs146863522	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:50,7:32:57:0.123:2	./.	0/1:78,4:32:82:0.049:2	./.	./.	./.	./.	0/1:83,4:29:87:0.046:2	./.	./.
chr17	39197549	.	G	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:54,3:33:57:0.053:2	0/1:47,8:32:55:0.145:2	./.	0/1:80,4:31:84:0.048:2	./.	./.	./.	./.	./.	./.	./.
chr17	39216019	rs12937861	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:24:6:0.667:2	./.
chr17	39216320	rs111709692	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,23:30:33:0.697:2	./.
chr17	39221816	rs200049107	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.	./.
chr17	39221823	rs201193479	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.
chr17	39240504	rs11655310	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,21:29:37:0.568:2	0/1:14,5:27:19:0.263:2	0/1:1,3:29:4:0.750:2	0/1:0,34:29:34:1.00:2	0/1:0,33:28:33:1.00:2	0/1:38,32:30:70:0.457:2	./.	0/1:0,30:29:30:1.00:2	0/1:0,29:30:29:1.00:2	0/1:10,15:28:25:0.600:2	0/1:0,30:30:30:1.00:2
chr17	39240511	rs383835	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,17:31:36:0.472:2	0/1:14,5:31:19:0.263:2	./.	0/1:4,32:30:36:0.889:2	0/1:8,27:30:35:0.771:2	0/1:38,28:31:66:0.424:2	./.	0/1:6,29:31:35:0.829:2	0/1:13,16:33:29:0.552:2	0/1:15,11:30:26:0.423:2	0/1:7,21:29:29:0.750:2
chr17	39240627	rs189343211	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,6:27:54:0.111:2	0/1:38,7:32:45:0.156:2	0/1:37,4:33:41:0.098:2	./.	0/1:34,8:30:42:0.190:2	0/1:22,6:32:28:0.214:2	./.	0/1:25,5:32:30:0.167:2
chr17	39240641	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,3:32:20:0.150:2	./.	./.
chr17	39240661	rs11650484	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,11:32:34:0.324:2	0/1:13,12:32:25:0.480:2	0/1:2,4:33:6:0.667:2	0/1:2,36:32:38:0.947:2	0/1:0,37:32:37:1.00:2	0/1:14,17:32:31:0.548:2	./.	0/1:0,33:32:33:1.00:2	0/1:0,16:33:16:1.00:2	0/1:12,15:33:27:0.556:2	0/1:0,18:33:18:1.00:2
chr17	39240713	rs372892145	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,3:32:32:0.094:2	./.	./.	./.	./.	./.	./.	./.
chr17	39240729	rs200532954	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,4:32:24:0.167:2	0/1:15,3:31:18:0.167:2	./.	./.	./.	./.	./.	./.
chr17	39240745	rs199744933	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,3:33:17:0.176:2	./.
chr17	39240781	rs372960430	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,5:34:18:0.313:2	0/1:5,4:33:9:0.444:2	./.	./.	./.	./.	./.	0/1:1,4:33:5:0.800:2
chr17	39240790	rs11650261	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:32:3:0.667:2	0/1:15,4:28:19:0.211:2	./.	./.	./.	0/1:17,4:25:21:0.190:2	./.	./.	./.
chr17	39240794	rs9894106	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,11:31:20:0.550:2	0/1:10,6:31:17:0.375:2	./.	./.	0/1:12,11:31:23:0.478:2	./.	./.	0/1:0,9:32:9:1.00:2
chr17	39240795	rs9894966	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,11:30:21:0.524:2	0/1:11,6:30:17:0.353:2	0/1:16,4:31:20:0.200:2	./.	0/1:14,11:30:25:0.440:2	./.	0/1:7,3:28:10:0.300:2	0/1:0,9:31:9:1.00:2
chr17	39240819	rs374377149	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,5:28:42:0.119:2	0/1:34,11:24:45:0.244:2	0/1:27,7:27:35:0.206:2	./.	0/1:43,10:23:53:0.189:2	./.	./.	./.
chr17	39240900	rs61746948	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:78,4:30:82:0.049:2	./.	0/1:160,7:28:167:0.042:2	./.	0/1:140,5:30:145:0.034:2	./.	0/1:175,14:30:189:0.074:2	./.	0/1:128,7:28:135:0.052:2	0/1:129,5:29:134:0.037:2
chr17	39240908	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:158,7:29:165:0.042:2	./.	./.	./.	0/1:183,13:26:196:0.066:2	./.	0/1:128,5:29:133:0.038:2	0/1:139,5:28:145:0.035:2
chr17	39241116	rs2320192	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:77,57:33:134:0.425:2	0/1:49,26:33:75:0.347:2	./.	0/1:0,99:33:99:1.00:2	0/1:0,36:32:36:1.00:2	0/1:67,52:33:119:0.437:2	./.	0/1:0,91:33:91:1.00:2	0/1:78,43:33:121:0.355:2	0/1:44,35:32:79:0.443:2	0/1:0,157:33:157:1.00:2
chr17	39241359	rs4544293	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:45,47:33:92:0.511:2	0/1:29,32:33:61:0.525:2	./.	0/1:0,109:33:109:1.00:2	0/1:0,50:32:50:1.00:2	0/1:68,62:32:130:0.477:2	./.	0/1:2,102:33:104:0.981:2	0/1:72,72:34:144:0.500:2	0/1:37,58:33:95:0.611:2	0/1:0,129:33:129:1.00:2
chr17	39253797	rs142150852	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,16:32:88:0.182:2	./.	./.
chr17	39253805	rs146385966	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,13:32:84:0.155:2	./.	./.
chr17	39253815	rs77163010	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,50:30:106:0.472:2	0/1:29,35:29:64:0.547:2	0/1:18,6:28:24:0.250:2	0/1:0,98:28:98:1.00:2	0/1:1,151:30:152:0.993:2	0/1:60,44:30:104:0.423:2	./.	0/1:3,143:30:146:0.979:2	0/1:7,61:30:68:0.897:2	0/1:68,46:29:114:0.404:2	0/1:1,73:29:74:0.986:2
chr17	39253835	rs72625995	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,47:31:97:0.485:2	0/1:28,21:31:50:0.429:2	0/1:17,7:29:24:0.292:2	0/1:0,74:31:74:1.00:2	0/1:1,129:31:130:0.992:2	0/1:49,34:30:83:0.410:2	./.	0/1:3,94:31:97:0.969:2	0/1:0,49:31:49:1.00:2	0/1:49,29:30:78:0.372:2	0/1:0,65:31:65:1.00:2
chr17	39253886	rs78550130	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,17:26:40:0.425:2	0/1:15,14:26:29:0.483:2	./.	0/1:0,27:26:27:1.00:2	0/1:0,23:25:23:1.00:2	0/1:19,15:26:34:0.441:2	./.	0/1:0,30:26:30:1.00:2	0/1:7,15:28:22:0.682:2	0/1:20,9:27:29:0.310:2	0/1:0,29:26:29:1.00:2
chr17	39253931	rs150613353	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,9:33:19:0.474:2	./.	./.
chr17	39253956	rs139720993	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,4:31:11:0.364:2	./.	./.	0/1:0,7:27:7:1.00:2	0/1:0,2:27:2:1.00:2	0/1:13,4:29:17:0.235:2	./.	0/1:0,5:30:5:1.00:2	0/1:15,3:33:18:0.167:2	0/1:9,3:29:12:0.250:2	./.
chr17	39253960	rs144672535	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,4:29:11:0.364:2	./.	./.	0/1:0,7:28:7:1.00:2	0/1:0,2:30:2:1.00:2	0/1:11,5:27:16:0.313:2	./.	0/1:0,5:31:5:1.00:2	./.	./.	./.
chr17	39253969	rs147906218	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,4:32:10:0.400:2	./.	0/1:1,2:32:3:0.667:2	0/1:0,9:33:9:1.00:2	0/1:0,2:32:2:1.00:2	0/1:11,5:30:16:0.313:2	./.	0/1:0,8:33:8:1.00:2	./.	0/1:8,4:34:12:0.333:2	./.
chr17	39254037	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,4:28:22:0.182:2	./.	./.	./.	0/1:14,3:31:17:0.176:2	./.	./.	./.
chr17	39254054	rs76270529	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:9,3:27:12:0.250:2	./.	./.	./.	./.	./.	./.	0/1:14,4:31:18:0.222:2	0/1:5,8:31:13:0.615:2	./.	./.
chr17	39254061	rs79632137	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,5:31:28:0.179:2	0/1:21,3:33:24:0.125:2	./.	./.	0/1:17,3:31:20:0.150:2	./.	./.	0/1:5,4:34:9:0.444:2
chr17	39254133	rs200462175	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:31:11:0.364:2	0/1:11,5:32:16:0.313:2	./.	./.	./.	0/1:15,3:31:18:0.167:2	./.	./.
chr17	39254142	rs375280428	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,4:28:16:0.250:2	0/1:7,6:33:13:0.462:2	./.	0/1:4,9:32:13:0.692:2	0/1:8,9:32:17:0.529:2	0/1:29,3:31:32:0.094:2	./.	0/1:3,6:34:9:0.667:2	0/1:12,7:29:19:0.368:2	./.	0/1:4,4:31:8:0.500:2
chr17	39254149	rs201246375	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,3:33:19:0.158:2	./.	./.	./.	./.	./.	./.
chr17	39254184	rs7217470	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,22:32:33:0.667:2	./.	./.
chr17	39254247	rs137943557	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,24:31:46:0.522:2
chr17	39254257	rs142487897	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,29:30:57:0.509:2
chr17	39254318	rs138296121	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:33:155:0.026:2	./.	./.	./.
chr17	39257796	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,18:28:37:0.486:2	./.
chr17	39257797	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,3:32:25:0.120:2	./.	./.	0/1:33,4:34:37:0.108:2	./.	./.	./.
chr17	39257946	rs140048812	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:35:3:0.667:2	./.	./.
chr17	39257977	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,4:30:12:0.333:2	./.
chr17	39258027	rs7503699	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,12:29:26:0.462:2	0/1:10,12:29:22:0.545:2	./.	0/1:0,50:29:50:1.00:2	0/1:3,106:29:109:0.972:2	0/1:33,24:30:57:0.421:2	./.	0/1:2,89:29:91:0.978:2	./.	0/1:18,19:29:37:0.514:2	0/1:0,24:29:24:1.00:2
chr17	39258070	rs113753849	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,25:31:45:0.556:2	./.
chr17	39258221	rs141088836	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,24:30:36:0.667:2	./.	./.	./.	./.	./.	./.
chr17	39261693	rs113059833	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,8:29:36:0.222:2	./.	./.	0/1:38,8:30:47:0.174:2	./.	./.	0/1:22,4:29:27:0.154:2
chr17	39261717	rs149483591	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,26:28:42:0.619:2	./.	./.
chr17	39261933	rs7207685	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,26:30:26:1.00:2	0/1:0,12:31:12:1.00:2	./.	0/1:0,17:30:17:1.00:2	0/1:0,13:30:13:1.00:2	0/1:19,12:30:31:0.387:2	./.	0/1:0,15:31:15:1.00:2	0/1:14,7:32:21:0.333:2	0/1:6,9:32:15:0.600:2	0/1:0,7:29:7:1.00:2
chr17	39261949	rs7212474	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,17:33:28:0.607:2	0/1:5,7:33:12:0.583:2	./.	0/1:0,10:32:10:1.00:2	0/1:0,7:32:7:1.00:2	0/1:18,15:32:33:0.455:2	./.	0/1:0,15:32:15:1.00:2	0/1:11,8:33:19:0.421:2	0/1:3,7:33:10:0.700:2	0/1:0,9:32:9:1.00:2
chr17	39262015	rs376253266	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,3:32:19:0.158:2	./.	./.	./.	./.	0/1:8,4:26:12:0.333:2	./.
chr17	39262083	rs75392608	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,3:31:21:0.143:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	39262092	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,4:32:20:0.200:2	./.	./.	./.	./.	./.	0/1:16,6:32:22:0.273:2	./.	./.	./.
chr17	39262096	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,4:33:20:0.200:2	./.	./.	./.	./.	./.	0/1:20,6:32:26:0.231:2	./.	./.	./.
chr17	39262121	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,4:32:21:0.190:2	./.	./.
chr17	39262122	rs188946528	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,3:31:14:0.214:2	./.	./.	./.	./.
chr17	39262166	rs199984653	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,10:31:44:0.227:2	./.	./.
chr17	39262184	rs201003604	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,5:27:77:0.066:2	./.	./.	./.	./.	./.	./.
chr17	39262565	rs371714110	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,31:29:87:0.356:2	./.	./.	./.	./.	./.
chr17	39274069	rs349771	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,24:26:75:0.320:2	0/1:12,16:28:28:0.571:2	./.	0/1:5,75:27:80:0.938:2	0/1:3,28:27:31:0.903:2	0/1:37,35:27:72:0.486:2	./.	0/1:2,61:27:63:0.968:2	./.	0/1:26,23:29:49:0.469:2	0/1:7,33:26:40:0.825:2
chr17	39274087	rs141357429	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:64,8:29:72:0.111:2	./.	./.	0/1:64,7:30:71:0.099:2	./.	0/1:53,6:29:59:0.102:2	./.	0/1:51,5:28:56:0.089:2	./.	./.	./.
chr17	39274132	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,4:30:31:0.129:2	./.	./.
chr17	39274150	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,4:30:28:0.143:2	./.	./.
chr17	39274157	rs145503152	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,11:32:50:0.220:2	0/1:16,3:31:19:0.158:2	./.	0/1:32,8:30:40:0.200:2	0/1:16,4:27:20:0.200:2	0/1:30,7:30:37:0.189:2	./.	0/1:27,6:30:33:0.182:2	0/1:18,7:30:25:0.280:2	0/1:16,5:28:21:0.238:2	0/1:9,8:32:17:0.471:2
chr17	39274194	rs201517671	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,4:30:21:0.190:2	./.	./.	./.	./.	./.
chr17	39274205	rs80322614	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,5:30:23:0.217:2	./.	./.	./.	./.	0/1:16,3:32:19:0.158:2	./.	./.
chr17	39274206	rs79388709	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,4:29:24:0.167:2	./.	./.	./.	./.	0/1:16,3:32:19:0.158:2	./.	./.
chr17	39274235	rs11654403	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:11,8:32:19:0.421:2	0/1:7,5:31:12:0.417:2	./.	0/1:17,4:28:21:0.190:2	./.	0/1:10,14:31:24:0.583:2	./.	0/1:15,4:31:19:0.211:2	./.	0/1:6,9:31:15:0.600:2	0/1:4,4:31:8:0.500:2
chr17	39274291	rs200214744	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,3:30:18:0.167:2	./.	./.	0/1:23,6:33:29:0.207:2	./.	./.	./.
chr17	39274319	rs199712484	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,3:34:19:0.158:2	./.
chr17	39274364	rs425784	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,5:29:31:0.167:2	./.
chr17	39274415	rs425487	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,4:29:28:0.154:2	./.	./.	./.	./.	./.	./.
chr17	39274416	rs408579	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,4:30:33:0.121:2	./.
chr17	39274426	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,4:34:32:0.125:2	./.	./.	./.	./.	./.	./.
chr17	39274518	rs9897031	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,62:31:119:0.521:2	0/1:43,28:32:71:0.394:2	0/1:4,4:30:8:0.500:2	0/1:3,126:30:129:0.977:2	0/1:0,113:30:113:1.00:2	0/1:56,70:30:126:0.556:2	./.	0/1:2,127:30:129:0.984:2	0/1:79,62:31:141:0.440:2	0/1:0,127:30:127:1.00:2	0/1:0,128:30:128:1.00:2
chr17	39279921	rs623410	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,12:32:36:0.333:2	./.	./.
chr17	39280162	rs28515113	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,3:31:16:0.188:2	./.	./.	./.	./.	./.	./.
chr17	39280207	rs611696	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:21,3:33:24:0.125:2	./.	./.	./.	./.	./.	./.	0/1:14,3:31:17:0.176:2	0/1:6,5:32:11:0.455:2	./.	./.
chr17	39280234	rs611651	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,9:27:18:0.529:2	./.	./.
chr17	39280397	rs113439040	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2	0/1:189,6:32:195:0.031:2	./.
chr17	39296152	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:128,4:32:132:0.030:2	./.	./.	./.	./.	0/1:169,6:31:175:0.034:2	./.	./.	./.	0/1:143,5:31:148:0.034:2	0/1:142,6:25:148:0.041:2
chr17	39296158	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,5:28:165:0.030:2	./.	0/1:129,5:28:134:0.037:2	./.	0/1:132,5:28:137:0.036:2	0/1:120,5:27:125:0.040:2
chr17	39296167	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:138,4:32:142:0.028:2	./.	0/1:145,6:30:152:0.040:2	./.	0/1:118,8:32:126:0.063:2	./.	0/1:120,6:30:126:0.048:2	0/1:113,5:28:118:0.042:2
chr17	39296254	rs72483263	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:53,12:30:65:0.185:2	./.	./.	0/1:37,27:30:64:0.422:2	0/1:31,12:30:43:0.279:2	0/1:45,13:30:58:0.224:2	./.	0/1:36,24:30:60:0.400:2	0/1:30,7:31:37:0.189:2	0/1:38,11:32:49:0.224:2	0/1:14,9:31:23:0.391:2
chr17	39296361	rs146882220	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,10:33:34:0.294:2	0/1:16,5:29:21:0.238:2	./.	0/1:42,7:32:49:0.143:2	0/1:36,20:31:56:0.357:2	0/1:49,8:31:57:0.140:2	./.	0/1:54,23:33:77:0.299:2	0/1:32,6:34:38:0.158:2	0/1:35,6:23:41:0.146:2	0/1:12,4:29:16:0.250:2
chr17	39296412	rs200470462	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:23,3:31:26:0.115:2	./.	0/1:37,5:31:42:0.119:2	0/1:32,3:33:35:0.086:2	./.	./.	0/1:46,5:33:51:0.098:2	./.	./.	./.
chr17	39296466	rs35985080	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,20:30:50:0.400:2	./.	./.	./.	0/1:6,12:30:18:0.667:2	./.
chr17	39296556	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,3:28:15:0.200:2	./.	./.
chr17	39305510	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,5:31:161:0.031:2
chr17	39305646	rs1846044	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,32:29:64:0.500:2	./.	./.	./.	./.	./.
chr17	39305785	rs411367	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:20,5:32:25:0.200:2	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	39305956	rs1497383	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,23:32:69:0.333:2	0/1:18,18:32:36:0.500:2	./.	0/1:0,90:31:90:1.00:2	0/1:1,36:32:37:0.973:2	0/1:33,49:31:82:0.598:2	./.	0/1:2,72:32:74:0.973:2	./.	0/1:31,26:31:57:0.456:2	0/1:39,35:32:74:0.473:2
chr17	39306042	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:34:183:0.022:2	./.	./.	./.	./.	./.
chr17	39316482	rs366700	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,51:33:138:0.370:2	./.	./.
chr17	39316760	rs61746658	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,22:30:42:0.524:2	./.	./.
chr17	39316841	rs444509	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,14:33:38:0.368:2	./.	./.
chr17	39316870	rs385055	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,12:32:47:0.255:2	./.	./.
chr17	39323971	rs428371	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,78:32:139:0.561:2	./.	./.
chr17	39324068	rs440374	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,65:33:147:0.442:2	./.	./.
chr17	39324104	rs368619075	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,3:36:104:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	39324123	rs143200002	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,86:30:180:0.486:2	./.	./.	./.	./.	./.
chr17	39324164	rs12600645	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,5:29:93:0.054:2	./.	./.	./.	./.	./.	./.	./.
chr17	39324194	rs12600648	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:122,4:30:126:0.032:2	./.	./.	0/1:45,12:30:57:0.211:2	0/1:49,5:29:54:0.093:2	./.	./.	0/1:77,6:30:83:0.072:2	./.	./.	./.
chr17	39324213	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,7:33:167:0.042:2	./.	./.	./.	./.	./.
chr17	39324237	rs67284259	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,3:33:56:0.054:2	./.	./.	./.	./.	./.	./.	./.
chr17	39324280	rs55690617	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,52:30:170:0.306:2	./.	./.
chr17	39324410	rs73985507	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,22:32:50:0.440:2	./.	./.
chr17	39334133	rs389784	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,28:31:28:1.00:2	0/1:0,15:32:15:1.00:2	./.	0/1:0,20:31:20:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,12:33:12:1.00:2	0/1:10,4:28:14:0.286:2
chr17	39334273	rs201015994	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,3:32:23:0.130:2	./.	./.
chr17	39334314	rs200720939	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,6:32:58:0.103:2	./.	./.
chr17	39334327	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,3:33:53:0.057:2	./.
chr17	39334456	rs493514	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:33:102:1.00:2	0/1:0,88:32:88:1.00:2	0/1:16,8:32:24:0.333:2	0/1:0,162:32:162:1.00:2	0/1:0,91:32:91:1.00:2	0/1:1,152:32:153:0.993:2	0/1:3,124:33:127:0.976:2	0/1:0,177:32:177:1.00:2	0/1:0,169:33:169:1.00:2	0/1:0,145:33:145:1.00:2	0/1:109,72:33:181:0.398:2
chr17	39340707	rs398825	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,142:30:142:1.00:2	0/1:0,107:30:107:1.00:2	0/1:10,22:29:33:0.688:2	0/1:0,145:29:145:1.00:2	0/1:0,156:29:157:1.00:2	0/1:0,151:29:151:1.00:2	0/1:0,138:29:138:1.00:2	0/1:0,137:29:138:1.00:2	0/1:0,148:30:148:1.00:2	0/1:0,150:29:150:1.00:2	0/1:68,63:30:131:0.481:2
chr17	39340729	rs373304706	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:32:122:0.033:2	./.	./.	./.	./.	./.
chr17	39340791	rs201345787	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,5:32:69:0.072:2	0/1:42,5:31:47:0.106:2	./.	./.	./.	0/1:73,9:30:82:0.110:2	./.	./.	./.	./.	./.
chr17	39340795	rs71155126	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,5:32:64:0.078:2	0/1:39,4:30:43:0.093:2	./.	./.	./.	0/1:69,9:31:78:0.115:2	./.	./.	./.	./.	./.
chr17	39340812	rs483929	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:30:42:1.00:2	0/1:0,23:31:23:1.00:2	0/1:11,4:33:15:0.267:2	0/1:2,35:32:37:0.946:2	0/1:0,59:30:59:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,30:30:30:1.00:2	0/1:38,14:30:52:0.269:2
chr17	39340826	rs483893	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,24:26:24:1.00:2	0/1:0,14:28:14:1.00:2	./.	0/1:2,20:29:22:0.909:2	0/1:2,35:27:37:0.946:2	0/1:1,27:27:28:0.964:2	0/1:0,19:29:19:1.00:2	0/1:1,34:28:35:0.971:2	0/1:0,25:27:25:1.00:2	0/1:1,18:27:19:0.947:2	0/1:33,7:23:40:0.175:2
chr17	39340843	rs2320229	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,21:28:25:0.840:2	0/1:1,5:29:6:0.833:2	./.	0/1:5,15:30:20:0.750:2	0/1:1,25:30:26:0.962:2	0/1:2,18:31:21:0.900:2	0/1:0,15:31:15:1.00:2	0/1:0,27:31:27:1.00:2	0/1:1,18:32:19:0.947:2	0/1:1,15:31:16:0.938:2	0/1:32,4:31:36:0.111:2
chr17	39340852	rs2320230	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,23:27:23:1.00:2	0/1:1,5:26:6:0.833:2	./.	0/1:2,24:29:26:0.923:2	0/1:0,23:29:23:1.00:2	0/1:2,23:30:25:0.920:2	0/1:0,14:30:14:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,14:31:14:1.00:2	0/1:25,9:30:34:0.265:2
chr17	39340910	rs2320231	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:28:39:1.00:2	0/1:0,13:28:13:1.00:2	0/1:11,3:31:14:0.214:2	0/1:0,47:28:47:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,63:29:63:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,58:29:58:1.00:2	0/1:0,29:29:29:1.00:2	0/1:0,27:29:27:1.00:2	0/1:18,14:30:33:0.438:2
chr17	39341158	rs452531	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,134:32:134:1.00:2	0/1:0,106:32:106:1.00:2	0/1:23,12:32:35:0.343:2	0/1:0,136:32:136:1.00:2	0/1:0,114:31:114:1.00:2	0/1:0,139:31:139:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,149:32:149:1.00:2	0/1:0,180:33:180:1.00:2	0/1:1,122:32:123:0.992:2	0/1:113,73:32:186:0.392:2
chr17	39341266	rs449817	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,146:32:146:1.00:2	0/1:0,76:32:76:1.00:2	0/1:15,10:32:25:0.400:2	0/1:1,128:33:129:0.992:2	0/1:0,49:32:49:1.00:2	0/1:0,106:32:107:1.00:2	0/1:1,85:33:86:0.988:2	0/1:0,116:32:117:1.00:2	0/1:0,150:34:150:1.00:2	0/1:0,94:32:94:1.00:2	0/1:116,79:33:195:0.405:2
chr17	39341294	rs385122	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,165:32:165:1.00:2	0/1:0,96:32:96:1.00:2	0/1:17,7:31:24:0.292:2	0/1:1,146:31:147:0.993:2	0/1:0,82:31:82:1.00:2	0/1:2,152:31:154:0.987:2	0/1:0,97:31:97:1.00:2	0/1:0,164:31:164:1.00:2	0/1:0,196:33:196:1.00:2	0/1:0,106:32:106:1.00:2	0/1:121,74:32:195:0.379:2
chr17	39341473	rs12449316	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:48,50:33:98:0.510:2	0/1:33,32:33:65:0.492:2	0/1:5,6:32:11:0.545:2	./.	./.	0/1:52,48:33:100:0.480:2	0/1:0,57:33:57:1.00:2	./.	0/1:58,56:33:114:0.491:2	./.	./.
chr17	39346139	rs61743546	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,11:30:26:0.423:2	./.	./.	./.	./.	0/1:10,13:29:23:0.565:2	./.
chr17	39346328	rs189935802	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,11:30:32:0.344:2	./.	./.	./.	./.	./.	./.	./.
chr17	39346518	rs238824	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:32:91:1.00:2	0/1:0,44:31:44:1.00:2	0/1:1,7:32:8:0.875:2	0/1:0,151:32:151:1.00:2	0/1:0,144:32:144:1.00:2	0/1:0,140:32:140:1.00:2	0/1:0,143:32:143:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,137:33:137:1.00:2	0/1:0,93:32:94:1.00:2	0/1:47,40:32:87:0.460:2
chr17	39382936	rs201201869	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,6:30:73:0.082:2	./.	./.	./.	./.	./.
chr17	39382942	rs11078986	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:38,37:32:75:0.493:2	0/1:15,22:32:37:0.595:2	./.	0/1:50,48:32:98:0.490:2	0/1:15,38:31:53:0.717:2	0/1:44,22:31:66:0.333:2	./.	0/1:34,39:32:73:0.534:2	./.	0/1:27,33:32:60:0.550:2	0/1:30,12:31:42:0.286:2
chr17	39383012	rs9903833	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,25:30:49:0.510:2	0/1:13,16:32:29:0.552:2	./.	0/1:22,27:30:49:0.551:2	0/1:18,26:30:44:0.591:2	0/1:29,23:30:52:0.442:2	./.	0/1:20,18:30:38:0.474:2	./.	0/1:11,32:30:43:0.744:2	0/1:12,7:29:19:0.368:2
chr17	39383027	rs71371478	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,16:30:45:0.356:2	0/1:18,9:30:27:0.333:2	./.	0/1:38,15:29:53:0.283:2	0/1:26,13:31:39:0.333:2	0/1:47,5:30:52:0.096:2	./.	0/1:20,9:31:29:0.310:2	./.	0/1:29,9:31:38:0.237:2	0/1:17,3:29:20:0.150:2
chr17	39383041	rs71371479	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,4:31:37:0.108:2	0/1:22,4:31:26:0.154:2	./.	0/1:44,6:29:50:0.120:2	0/1:33,4:28:37:0.108:2	./.	./.	./.	./.	0/1:31,3:31:34:0.088:2	./.
chr17	39383073	rs9902235	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,19:31:24:0.792:2	0/1:1,15:32:16:0.938:2	0/1:2,2:34:4:0.500:2	0/1:2,37:33:39:0.949:2	0/1:2,24:31:26:0.923:2	0/1:23,23:33:46:0.500:2	./.	0/1:3,16:32:19:0.842:2	./.	0/1:2,30:33:32:0.938:2	0/1:13,5:27:18:0.278:2
chr17	39383156	rs34024914	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,36:32:73:0.493:2	./.	./.
chr17	39383322	rs200622888	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:163,6:32:169:0.036:2	0/1:117,16:32:133:0.120:2	./.	0/1:153,10:32:164:0.061:2	0/1:161,9:31:171:0.053:2	0/1:161,15:32:176:0.085:2	./.	0/1:141,9:31:150:0.060:2	./.	0/1:164,16:32:181:0.089:2	0/1:172,9:30:181:0.050:2
chr17	39383335	rs238787	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,65:29:153:0.425:2	0/1:76,54:28:130:0.415:2	0/1:4,19:30:23:0.826:2	0/1:16,136:29:152:0.895:2	0/1:16,162:29:178:0.910:2	0/1:46,138:30:184:0.750:2	0/1:37,141:30:178:0.792:2	0/1:17,137:30:154:0.890:2	0/1:14,122:30:136:0.897:2	0/1:26,137:29:163:0.840:2	0/1:101,73:28:174:0.420:2
chr17	39383377	.	C	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:146,12:33:158:0.076:2	0/1:97,21:32:118:0.178:2	./.	0/1:167,15:31:182:0.082:2	0/1:148,14:31:162:0.086:2	0/1:174,17:32:191:0.089:2	./.	0/1:178,15:32:193:0.078:2	./.	0/1:139,25:32:164:0.152:2	0/1:172,10:31:182:0.055:2
chr17	39383403	.	C	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:149,9:31:158:0.057:2	0/1:119,13:31:132:0.098:2	./.	0/1:156,11:30:167:0.066:2	0/1:156,10:29:166:0.060:2	0/1:168,6:30:174:0.034:2	./.	0/1:161,10:30:171:0.058:2	./.	0/1:133,19:29:152:0.125:2	0/1:168,5:27:173:0.029:2
chr17	39383435	.	C	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:142,20:33:162:0.123:2	0/1:122,21:31:143:0.147:2	0/1:43,4:29:47:0.085:2	0/1:153,5:32:158:0.032:2	0/1:150,14:31:165:0.085:2	0/1:161,13:31:174:0.075:2	./.	0/1:155,17:32:172:0.099:2	./.	0/1:137,17:31:154:0.110:2	0/1:170,6:32:176:0.034:2
chr17	39383438	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:142,19:32:161:0.118:2	0/1:126,21:31:147:0.143:2	0/1:43,4:32:47:0.085:2	0/1:155,5:31:160:0.031:2	0/1:149,15:30:164:0.091:2	0/1:163,11:32:174:0.063:2	./.	0/1:159,17:31:176:0.097:2	./.	0/1:142,18:31:160:0.113:2	0/1:170,6:33:177:0.034:2
chr17	39383455	.	C	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:134,37:31:171:0.216:2	0/1:110,41:30:151:0.272:2	0/1:51,6:28:57:0.105:2	0/1:141,28:30:169:0.166:2	0/1:131,34:30:165:0.206:2	0/1:153,21:31:174:0.121:2	./.	0/1:141,38:30:180:0.212:2	./.	0/1:121,44:30:165:0.267:2	0/1:165,19:31:184:0.103:2
chr17	39383486	rs201856303	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,7:31:188:0.037:2	./.	./.	./.
chr17	39383533	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:141,40:32:182:0.221:2	0/1:88,40:32:128:0.313:2	0/1:40,3:32:43:0.070:2	0/1:115,40:32:155:0.258:2	0/1:104,37:31:141:0.262:2	0/1:135,18:31:153:0.118:2	./.	0/1:134,27:31:161:0.168:2	./.	0/1:111,42:31:153:0.275:2	0/1:152,19:32:171:0.111:2
chr17	39383559	.	A	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:143,14:34:158:0.089:2	0/1:90,15:32:105:0.143:2	./.	0/1:117,13:33:130:0.100:2	0/1:102,16:33:118:0.136:2	0/1:159,5:34:164:0.030:2	./.	0/1:134,13:33:147:0.088:2	./.	0/1:112,19:32:131:0.145:2	0/1:177,4:34:181:0.022:2
chr17	39383561	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,3:33:36:0.083:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	39383577	rs375504265	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:124,28:33:152:0.184:2	0/1:87,11:32:98:0.112:2	0/1:26,8:32:34:0.235:2	0/1:132,19:33:151:0.126:2	0/1:92,18:29:110:0.164:2	0/1:161,11:32:172:0.064:2	./.	0/1:109,30:32:139:0.216:2	./.	0/1:103,21:33:124:0.169:2	0/1:161,20:33:181:0.110:2
chr17	39383632	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:143,7:32:150:0.047:2	0/1:125,4:32:129:0.031:2	0/1:42,3:33:45:0.067:2	0/1:161,6:32:167:0.036:2	0/1:139,4:33:143:0.028:2	0/1:174,6:31:180:0.033:2	./.	0/1:125,7:31:132:0.053:2	./.	0/1:163,5:30:168:0.030:2	0/1:178,9:31:187:0.048:2
chr17	39388811	rs112082369	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,31:31:80:0.388:2	0/1:1,42:30:43:0.977:2	./.	0/1:0,31:31:31:1.00:2	./.	./.
chr17	39388852	rs1860551	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:31:50:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,68:33:68:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,61:31:61:1.00:2	0/1:25,9:30:34:0.265:2
chr17	39388924	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,5:24:28:0.179:2	./.	./.
chr17	39388947	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:28:40:0.100:2	./.	./.
chr17	39388981	rs143261478	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,6:33:75:0.081:2	0/1:32,4:29:36:0.111:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	39389005	rs147533707	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:34:91:0.044:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	39389185	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,8:33:98:0.082:2	./.	./.	./.	./.	0/1:106,4:32:110:0.036:2	0/1:83,5:31:88:0.057:2	./.	./.	./.	./.
chr17	39389205	rs114014201	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:30:94:0.043:2	./.	./.	./.	./.
chr17	39389310	.	C	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:169,5:33:174:0.029:2	./.	./.	./.	0/1:111,4:31:115:0.035:2	0/1:172,4:32:176:0.023:2	./.	0/1:156,4:32:160:0.025:2	./.	0/1:142,7:32:149:0.047:2	./.
chr17	39389354	rs139421229	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,73:32:146:0.500:2	./.
chr17	39389363	rs142516589	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.	./.	./.	./.
chr17	39389422	rs117083591	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,5:32:138:0.036:2	./.	./.	./.	./.
chr17	39394446	rs201074479	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,3:34:27:0.111:2	./.	./.
chr17	39394482	rs201454642	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,4:31:75:0.053:2	0/1:55,7:32:62:0.113:2	./.	./.	0/1:68,6:31:74:0.081:2	./.	./.	./.
chr17	39394576	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,5:32:105:0.048:2	./.	0/1:167,4:33:172:0.023:2
chr17	39394674	rs71383390	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,133:32:167:0.796:2	0/1:20,106:32:126:0.841:2	0/1:39,9:33:48:0.188:2	0/1:28,100:33:129:0.781:2	0/1:24,163:32:187:0.872:2	0/1:108,77:32:186:0.416:2	./.	0/1:37,145:32:183:0.797:2	./.	0/1:33,115:32:148:0.777:2	0/1:97,64:33:162:0.398:2
chr17	39394687	.	C	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:151,30:27:181:0.166:2	0/1:117,14:27:131:0.107:2	0/1:33,16:28:49:0.327:2	0/1:93,40:26:133:0.301:2	0/1:158,30:26:188:0.160:2	0/1:167,28:26:195:0.144:2	0/1:167,29:26:196:0.148:2	0/1:151,41:26:192:0.214:2	0/1:114,52:27:166:0.313:2	0/1:119,46:27:165:0.279:2	0/1:147,21:28:168:0.125:2
chr17	39394717	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:155,9:30:164:0.055:2	./.	./.	0/1:153,14:30:168:0.084:2	./.	./.	./.
chr17	39394729	rs146488039	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:97,60:30:157:0.382:2	0/1:47,53:31:100:0.530:2	0/1:41,7:31:48:0.146:2	0/1:126,33:30:159:0.208:2	0/1:103,39:30:142:0.275:2	0/1:147,30:30:177:0.169:2	./.	0/1:113,52:30:165:0.315:2	./.	0/1:92,59:30:151:0.391:2	0/1:146,36:30:182:0.198:2
chr17	39394755	rs141050869	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:99,37:30:136:0.272:2	0/1:65,28:31:93:0.301:2	./.	0/1:125,26:30:151:0.172:2	0/1:141,18:29:159:0.113:2	0/1:154,17:30:171:0.099:2	./.	0/1:128,30:30:158:0.190:2	./.	0/1:117,27:30:144:0.188:2	0/1:152,15:29:167:0.090:2
chr17	39394787	rs201305440	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:118,24:31:142:0.169:2	0/1:93,23:32:116:0.198:2	./.	0/1:136,17:29:153:0.111:2	0/1:156,11:31:167:0.066:2	0/1:159,14:32:173:0.081:2	./.	0/1:134,20:32:154:0.130:2	./.	0/1:122,21:32:143:0.147:2	0/1:166,7:33:173:0.040:2
chr17	39394790	rs202037613	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:122,23:32:145:0.159:2	0/1:94,24:31:118:0.203:2	./.	0/1:137,17:31:154:0.110:2	0/1:156,11:30:167:0.066:2	0/1:162,14:31:176:0.080:2	./.	0/1:136,19:31:155:0.123:2	./.	0/1:125,20:32:145:0.138:2	0/1:168,7:32:175:0.040:2
chr17	39394807	rs143369519	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:128,32:29:160:0.200:2	0/1:102,48:30:150:0.320:2	0/1:38,4:30:42:0.095:2	0/1:129,31:29:161:0.194:2	0/1:134,23:30:157:0.146:2	0/1:150,28:29:178:0.157:2	./.	0/1:126,37:30:163:0.227:2	./.	0/1:111,41:30:152:0.270:2	0/1:157,21:30:178:0.118:2
chr17	39394838	rs202148296	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:175,6:31:181:0.033:2	./.	./.	./.	0/1:176,8:30:185:0.043:2	./.	./.	./.
chr17	39394885	rs146764247	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:145,26:32:171:0.152:2	0/1:109,27:32:136:0.199:2	0/1:27,4:33:31:0.129:2	0/1:128,42:32:170:0.247:2	0/1:93,21:31:114:0.184:2	0/1:159,18:32:178:0.102:2	./.	0/1:129,41:32:170:0.241:2	./.	0/1:116,43:32:159:0.270:2	0/1:152,26:32:178:0.146:2
chr17	39394911	rs201802844	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:150,13:33:163:0.080:2	0/1:117,10:32:127:0.079:2	./.	0/1:134,18:33:153:0.118:2	0/1:94,11:33:105:0.105:2	./.	./.	0/1:123,16:32:139:0.115:2	./.	0/1:139,15:31:154:0.097:2	0/1:165,8:34:174:0.046:2
chr17	39394929	.	A	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:128,23:34:151:0.152:2	0/1:122,9:32:131:0.069:2	0/1:19,5:33:24:0.208:2	0/1:105,40:33:145:0.276:2	0/1:89,9:31:98:0.092:2	0/1:166,7:32:173:0.040:2	./.	0/1:112,23:32:135:0.170:2	./.	0/1:109,31:32:140:0.221:2	0/1:160,11:32:171:0.064:2
chr17	39394984	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:156,7:32:163:0.043:2	./.	./.	0/1:137,13:31:150:0.087:2	./.	./.	./.	0/1:153,7:31:160:0.044:2	./.	0/1:140,11:30:151:0.073:2	0/1:174,5:27:179:0.028:2
chr17	39406002	rs12952568	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,17:30:69:0.246:2	./.	./.	./.	./.	./.
chr17	39406008	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,12:31:62:0.194:2	./.	./.	./.	./.
chr17	39406078	rs200400945	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,5:31:16:0.313:2	./.	./.	0/1:27,6:30:33:0.182:2	./.	./.	./.
chr17	39406093	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,3:32:30:0.100:2	./.	./.	./.
chr17	39406104	rs11655843	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,32:31:33:0.970:2	0/1:2,18:32:20:0.900:2	./.	0/1:1,27:31:28:0.964:2	0/1:1,10:30:11:0.909:2	0/1:25,15:31:40:0.375:2	./.	0/1:3,24:32:27:0.889:2	./.	0/1:1,27:32:28:0.964:2	0/1:12,8:32:20:0.400:2
chr17	39406130	rs201060748	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,10:31:50:0.200:2	0/1:21,3:29:24:0.125:2	./.	./.	./.	./.
chr17	39406166	rs146098518	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:71,4:30:75:0.053:2	./.	./.	./.	./.	./.	./.	0/1:61,8:32:69:0.116:2	./.	./.	0/1:44,7:31:51:0.137:2
chr17	39406225	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,5:32:119:0.042:2	./.	./.
chr17	39406231	rs142016041	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,84:31:175:0.480:2	./.	./.	./.
chr17	39406244	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:128,6:25:134:0.045:2	0/1:61,5:32:66:0.076:2	./.	0/1:180,5:33:185:0.027:2	./.	./.	0/1:173,5:32:179:0.028:2	./.	0/1:147,9:32:156:0.058:2	./.	0/1:111,5:25:117:0.043:2
chr17	39406291	rs199605390	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:178,6:32:184:0.033:2	./.	./.	0/1:175,9:32:184:0.049:2	0/1:180,5:31:185:0.027:2	./.	./.	0/1:170,12:31:182:0.066:2	./.	0/1:155,6:30:161:0.037:2	0/1:172,6:32:178:0.034:2
chr17	39406299	.	A	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:175,10:26:185:0.054:2	0/1:86,13:28:99:0.131:2	./.	0/1:163,19:27:182:0.104:2	0/1:182,7:26:189:0.037:2	./.	0/1:180,8:26:188:0.043:2	0/1:167,13:25:180:0.072:2	./.	0/1:161,11:26:172:0.064:2	0/1:173,10:27:183:0.055:2
chr17	39406343	rs148655704	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:175,7:32:182:0.038:2	./.	./.	0/1:153,29:33:182:0.159:2	0/1:158,28:32:187:0.151:2	./.	./.	0/1:144,36:30:180:0.200:2	./.	0/1:152,6:30:158:0.038:2	./.
chr17	39406356	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,5:31:176:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	39406386	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:36:184:0.022:2	./.	./.	./.	./.
chr17	39406409	rs2191379	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,168:30:172:0.977:2	0/1:0,106:31:107:1.00:2	0/1:15,13:30:28:0.464:2	0/1:2,152:30:154:0.987:2	0/1:0,158:30:158:1.00:2	0/1:103,77:30:180:0.428:2	./.	0/1:2,154:30:156:0.987:2	./.	0/1:1,151:29:152:0.993:2	0/1:94,84:30:179:0.472:2
chr17	39406419	rs151209798	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:157,7:31:164:0.043:2	0/1:133,17:32:150:0.113:2	./.	./.	0/1:151,14:30:165:0.085:2	./.	./.	0/1:180,6:32:186:0.032:2
chr17	39406427	rs139224734	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:160,7:33:167:0.042:2	0/1:133,12:33:145:0.083:2	./.	./.	0/1:152,12:32:165:0.073:2	./.	./.	./.
chr17	39406447	rs3967754	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,171:30:172:0.994:2	0/1:4,128:29:132:0.970:2	0/1:15,23:30:38:0.605:2	0/1:11,157:30:168:0.935:2	0/1:25,126:30:151:0.834:2	0/1:104,83:29:187:0.444:2	./.	0/1:18,152:29:170:0.894:2	./.	0/1:0,178:29:178:1.00:2	0/1:91,84:29:175:0.480:2
chr17	39406461	rs111927217	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:136,7:29:143:0.049:2	./.	./.	./.	./.	./.	./.
chr17	39406474	.	C	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:165,6:31:171:0.035:2	0/1:141,15:30:156:0.096:2	./.	0/1:147,18:31:165:0.109:2	./.	./.	./.	./.
chr17	39406492	rs369118638	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:164,7:30:171:0.041:2	0/1:122,16:32:138:0.116:2	./.	0/1:141,23:32:164:0.140:2	0/1:159,5:32:164:0.030:2	./.	./.	./.
chr17	39406567	rs2270179	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,165:32:165:1.00:2	0/1:0,107:32:107:1.00:2	0/1:11,9:32:20:0.450:2	0/1:1,137:31:138:0.993:2	0/1:3,65:32:68:0.956:2	0/1:99,47:31:146:0.322:2	0/1:108,10:31:118:0.085:2	0/1:0,115:32:115:1.00:2	./.	0/1:0,138:32:138:1.00:2	0/1:114,63:32:177:0.356:2
chr17	39406589	rs4057758	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,162:33:163:0.994:2	0/1:0,128:33:128:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,172:33:172:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,171:32:171:1.00:2	0/1:0,143:33:143:1.00:2	0/1:0,159:32:159:1.00:2	0/1:0,186:34:186:1.00:2	0/1:1,174:33:175:0.994:2	0/1:105,78:33:184:0.426:2
chr17	39406673	rs2270178	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,15:33:30:0.500:2	./.	./.	0/1:58,86:32:144:0.597:2	0/1:4,152:33:156:0.974:2	./.	0/1:106,89:33:195:0.456:2	./.	./.
chr17	39411673	rs199748566	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,3:33:17:0.176:2	./.
chr17	39412093	rs368292401	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:111,9:31:120:0.075:2	./.	./.	0/1:161,5:32:166:0.030:2	0/1:113,7:31:120:0.058:2	./.	./.	./.	./.	0/1:97,11:32:108:0.102:2	0/1:96,6:29:102:0.059:2
chr17	39412119	rs77134625	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:106,9:30:115:0.078:2	./.	./.	0/1:153,6:31:159:0.038:2	0/1:101,7:29:108:0.065:2	./.	./.	./.	./.	0/1:92,11:31:103:0.107:2	0/1:105,6:28:111:0.054:2
chr17	39412165	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,6:33:94:0.064:2	./.
chr17	39412279	rs74875337	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,7:31:141:0.050:2	./.
chr17	39412301	rs113087637	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,7:31:183:0.038:2	./.
chr17	39412326	rs77196018	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,7:31:184:0.038:2	./.
chr17	39412372	rs2007206	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,138:33:139:1.00:2	0/1:1,91:33:92:0.989:2	0/1:19,8:33:27:0.296:2	0/1:0,142:33:142:1.00:2	0/1:1,122:32:123:0.992:2	0/1:102,63:33:165:0.382:2	./.	0/1:0,138:33:138:1.00:2	./.	0/1:1,139:33:140:0.993:2	0/1:109,63:33:172:0.366:2
chr17	39412575	rs35324178	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,3:32:15:0.200:2	./.	./.
chr17	39421781	rs12938374	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,12:33:12:1.00:2	0/1:0,8:33:8:1.00:2	./.	0/1:1,31:33:32:0.969:2	0/1:0,17:33:17:1.00:2	0/1:37,13:33:50:0.260:2	./.	0/1:0,21:32:21:1.00:2	./.	0/1:0,15:33:15:1.00:2	0/1:18,7:32:25:0.280:2
chr17	39421886	rs12938692	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,13:28:13:1.00:2	0/1:0,3:33:3:1.00:2	./.	0/1:0,4:32:4:1.00:2	./.	0/1:59,5:32:64:0.078:2	./.	0/1:2,5:33:7:0.714:2	./.	./.	./.
chr17	39421895	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:8,3:32:11:0.273:2	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.
chr17	39421947	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:11,8:29:19:0.421:2	0/1:11,5:32:16:0.313:2	./.	0/1:7,6:31:13:0.462:2	./.	./.	./.	0/1:11,3:31:14:0.214:2	./.	0/1:5,4:31:9:0.444:2	0/1:97,6:32:103:0.058:2
chr17	39421968	rs112809229	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:32:11:0.545:2	./.	./.	./.	0/1:119,71:31:190:0.374:2	./.	./.	./.	./.
chr17	39421993	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,11:32:20:0.550:2	0/1:7,5:32:12:0.417:2	0/1:14,3:33:17:0.176:2	0/1:7,5:35:12:0.417:2	0/1:6,3:32:9:0.333:2	0/1:154,6:33:160:0.038:2	0/1:177,4:33:181:0.022:2	0/1:6,9:32:15:0.600:2	./.	0/1:5,3:31:8:0.375:2	0/1:129,6:32:135:0.044:2
chr17	39421998	.	C	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:14,5:24:19:0.263:2	0/1:8,3:27:11:0.273:2	./.	./.	./.	./.	./.	0/1:12,4:27:16:0.250:2	./.	0/1:5,3:24:8:0.375:2	./.
chr17	39422025	rs12938150	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,7:31:10:0.700:2	0/1:3,5:32:8:0.625:2	0/1:12,4:29:16:0.250:2	0/1:3,4:30:7:0.571:2	0/1:3,3:30:6:0.500:2	./.	./.	./.	./.	0/1:1,4:29:5:0.800:2	0/1:135,6:31:141:0.043:2
chr17	39422040	rs113939557	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:1,2:32:3:0.667:2	./.	0/1:4,3:35:7:0.429:2	./.	./.	./.	./.	./.	./.	./.
chr17	39422567	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:31:10:0.300:2	./.
chr17	39422572	.	A	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,2:34:2:1.00:2	./.	./.	0/1:3,3:33:6:0.500:2	0/1:0,3:33:3:1.00:2	0/1:136,7:32:143:0.049:2	0/1:160,4:32:164:0.024:2	0/1:1,8:30:9:0.889:2	./.	0/1:4,6:32:10:0.600:2	0/1:138,5:32:143:0.035:2
chr17	39422621	rs189571881	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:32:7:0.429:2	0/1:2,3:31:5:0.600:2	./.	./.	./.	./.	0/1:8,3:34:11:0.273:2	./.
chr17	39422646	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:34:3:0.667:2	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	./.
chr17	39422677	rs35471578	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,16:32:16:1.00:2	./.	./.	0/1:0,97:31:97:1.00:2	0/1:0,98:32:98:1.00:2	./.	0/1:0,159:32:159:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,106:32:106:1.00:2
chr17	39432007	rs78283750	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:33:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	39432017	rs4890107	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	0/1:32,3:32:35:0.086:2	./.	0/1:3,4:28:7:0.571:2	./.	./.	./.
chr17	39432066	.	G	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,6:31:40:0.150:2	0/1:19,7:30:26:0.269:2	./.	0/1:30,6:32:36:0.167:2	./.	./.
chr17	39432562	rs9893993	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,106:32:106:1.00:2	0/1:0,59:32:59:1.00:2	0/1:3,10:31:13:0.769:2	0/1:0,92:31:92:1.00:2	0/1:1,60:31:61:0.984:2	0/1:54,39:31:93:0.419:2	./.	0/1:0,99:31:99:1.00:2	./.	0/1:0,89:32:89:1.00:2	0/1:70,81:32:151:0.536:2
chr17	39458476	rs1001191	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,8:32:19:0.421:2	./.	./.	0/1:71,50:32:121:0.413:2	0/1:2,117:32:119:0.983:2	./.	0/1:0,128:33:128:1.00:2	./.	./.
chr17	39458765	rs1005197	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:31:36:1.00:2	0/1:0,31:32:31:1.00:2	0/1:2,5:33:7:0.714:2	0/1:0,52:32:52:1.00:2	0/1:0,66:31:66:1.00:2	0/1:21,21:31:42:0.500:2	./.	0/1:0,49:32:49:1.00:2	./.	0/1:0,42:32:42:1.00:2	0/1:20,18:32:38:0.474:2
chr17	39458772	rs117847625	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,45:32:80:0.563:2	./.	./.	./.	./.
chr17	39458893	rs758741	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:32:11:0.636:2	./.	0/1:135,4:33:139:0.029:2	0/1:82,59:32:141:0.418:2	0/1:3,162:32:165:0.982:2	./.	0/1:0,132:32:132:1.00:2	./.	./.
chr17	39464046	rs2074286	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:26:6:0.500:2	./.	./.	0/1:45,35:31:80:0.438:2	0/1:1,81:31:83:0.988:2	./.	0/1:0,74:30:74:1.00:2	./.	0/1:34,42:30:76:0.553:2
chr17	39464437	rs72828116	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,33:31:82:0.402:2
chr17	39464487	rs2074285	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:29:8:0.375:2	./.	./.	0/1:44,36:29:80:0.450:2	0/1:1,110:29:111:0.991:2	./.	0/1:0,74:30:74:1.00:2	0/1:28,29:27:57:0.509:2	0/1:53,25:27:78:0.321:2
chr17	39464558	rs72828117	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,32:32:73:0.438:2
chr17	39464594	rs71373406	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,26:30:49:0.531:2	./.	./.
chr17	39464736	rs2074284	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:34:9:0.667:2	./.	./.	0/1:61,54:32:115:0.470:2	0/1:6,154:32:160:0.963:2	./.	0/1:0,105:33:105:1.00:2	./.	0/1:36,37:32:73:0.507:2
chr17	39464779	rs72828119	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,37:30:89:0.425:2
chr17	39465094	rs12453338	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,11:32:15:0.733:2	0/1:174,4:32:178:0.022:2	./.	0/1:72,71:31:143:0.497:2	0/1:2,181:31:183:0.989:2	./.	0/1:1,168:32:169:0.994:2	./.	./.
chr17	39465389	rs12451604	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:32:12:0.500:2	./.	./.	0/1:61,58:31:119:0.487:2	0/1:4,110:32:114:0.965:2	./.	0/1:1,83:33:84:0.988:2	./.	./.
chr17	39471778	rs78413710	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,5:26:8:0.625:2	0/1:0,11:27:11:1.00:2	./.	0/1:5,18:30:23:0.783:2	./.	./.
chr17	39471888	rs34354631	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,18:33:36:0.500:2	./.	0/1:9,11:32:20:0.550:2
chr17	39471929	rs12449671	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,5:33:16:0.313:2	0/1:0,4:34:4:1.00:2	./.	0/1:4,6:31:10:0.600:2	./.	./.
chr17	39502398	rs16966703	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,35:30:82:0.427:2	./.	0/1:34,36:28:70:0.514:2
chr17	39503163	rs12937519	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:29:14:0.571:2	./.	./.	0/1:75,60:30:135:0.444:2	0/1:6,139:30:146:0.959:2	./.	0/1:5,89:30:94:0.947:2	./.	0/1:59,39:31:98:0.398:2
chr17	39521142	rs34771886	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,54:30:89:0.607:2	./.	./.	./.	./.	./.
chr17	39521248	rs71373411	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,31:32:52:0.596:2	./.	0/1:37,22:31:59:0.373:2
chr17	39521494	rs79296577	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,6:31:164:0.037:2	./.	0/1:111,4:32:115:0.035:2	./.	./.
chr17	39525726	rs145065247	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,46:29:101:0.455:2	./.	./.	./.	./.	./.	./.
chr17	39525750	rs12450621	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,53:31:94:0.564:2	./.	./.	0/1:40,51:32:91:0.560:2	./.	./.
chr17	39535388	rs2071599	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,41:30:87:0.471:2	0/1:105,61:29:166:0.367:2	0/1:48,38:29:86:0.442:2
chr17	39535859	rs2239710	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,38:33:73:0.521:2	0/1:12,37:32:49:0.755:2	0/1:6,5:32:11:0.455:2	0/1:30,49:31:79:0.620:2	0/1:60,47:32:107:0.439:2	0/1:65,63:32:128:0.492:2	./.	./.	0/1:51,61:34:112:0.545:2	0/1:5,175:32:180:0.972:2	0/1:63,57:33:120:0.475:2
chr17	39535894	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,31:32:105:0.295:2	./.	./.
chr17	39538184	rs3744390	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,74:29:132:0.561:2	./.
chr17	39538334	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:31:148:0.027:2	./.	./.	./.	./.	./.
chr17	39538355	rs111441823	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,6:28:129:0.047:2	./.	./.	./.	./.	./.
chr17	39538442	rs8066866	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,22:30:42:0.524:2	./.	./.
chr17	39551763	rs112544857	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,35:30:66:0.530:2	./.
chr17	39553471	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:32:81:0.049:2	./.	./.	./.
chr17	39553474	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:31:82:0.049:2	./.	./.	./.
chr17	39553486	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:31:83:0.048:2	./.	./.	./.
chr17	39553547	rs6503627	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,42:31:76:0.553:2
chr17	39553648	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:32:108:0.037:2	./.
chr17	39577215	rs8071814	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,13:32:34:0.382:2
chr17	39578424	rs2071607	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,56:31:123:0.455:2	0/1:2,121:31:123:0.984:2	./.	0/1:2,77:31:79:0.975:2	./.	./.
chr17	39579059	rs78158550	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,21:29:70:0.300:2	0/1:1,23:30:24:0.958:2	./.	0/1:1,14:30:15:0.933:2	./.	./.
chr17	39579112	rs16966811	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,4:26:12:0.333:2	./.	./.	0/1:59,32:30:91:0.352:2	0/1:0,51:31:51:1.00:2	./.	0/1:1,37:32:38:0.974:2	./.	./.
chr17	39580433	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,4:34:98:0.041:2	./.	./.	./.	./.	./.	./.
chr17	39580559	rs9916475	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:37,38:33:75:0.507:2	0/1:23,27:32:50:0.540:2	0/1:11,3:31:14:0.214:2	./.	0/1:72,37:31:110:0.339:2	0/1:57,54:31:111:0.486:2	0/1:5,70:32:75:0.933:2	./.	0/1:0,94:32:94:1.00:2	0/1:44,28:32:72:0.389:2	./.
chr17	39580562	rs9916484	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:36,38:32:74:0.514:2	0/1:24,27:32:51:0.529:2	0/1:11,3:29:14:0.214:2	./.	0/1:72,37:32:110:0.339:2	0/1:56,54:31:110:0.491:2	0/1:4,70:33:74:0.946:2	./.	0/1:0,93:33:93:1.00:2	0/1:44,28:32:72:0.389:2	./.
chr17	39580660	rs9916724	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:38,50:32:88:0.568:2	0/1:27,24:32:51:0.471:2	0/1:13,4:29:17:0.235:2	./.	0/1:78,61:31:139:0.439:2	0/1:67,66:32:133:0.496:2	0/1:1,110:32:111:0.991:2	./.	0/1:0,115:33:115:1.00:2	0/1:42,59:31:101:0.584:2	./.
chr17	39580739	rs9910204	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:59,43:32:102:0.422:2	0/1:40,21:31:62:0.344:2	./.	./.	0/1:97,69:31:166:0.416:2	./.	./.	./.	./.	0/1:50,71:31:121:0.587:2	./.
chr17	39593768	rs897416	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,90:32:91:0.989:2	0/1:0,62:32:62:1.00:2	0/1:0,10:34:10:1.00:2	0/1:0,125:32:125:1.00:2	0/1:0,97:32:97:1.00:2	0/1:79,76:32:156:0.490:2	0/1:1,79:32:80:0.988:2	0/1:0,146:32:146:1.00:2	0/1:0,82:33:82:1.00:2	0/1:0,107:32:107:1.00:2	0/1:0,72:31:72:1.00:2
chr17	39594356	rs28550887	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,31:31:97:0.320:2	./.
chr17	39594766	rs138667284	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,31:29:88:0.352:2
chr17	39594809	rs2071612	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,31:32:68:0.456:2	0/1:18,24:31:42:0.571:2	0/1:8,4:32:12:0.333:2	0/1:45,54:33:99:0.545:2	0/1:82,53:32:135:0.393:2	./.	./.	0/1:4,128:33:132:0.970:2	./.	./.	0/1:31,37:33:68:0.544:2
chr17	39594857	rs60786473	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,28:31:64:0.438:2
chr17	39595484	rs148768443	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,12:30:75:0.160:2	0/1:57,31:28:88:0.352:2	./.	0/1:58,25:30:83:0.301:2	./.	./.
chr17	39595536	rs17494404	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,29:32:56:0.518:2
chr17	39595537	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,5:25:70:0.071:2	./.	./.	./.	./.
chr17	39595539	rs117668654	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,5:30:68:0.074:2	./.	./.	./.	./.
chr17	39616430	rs2604953	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,131:30:131:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,23:29:23:1.00:2	0/1:0,148:30:148:1.00:2	0/1:0,175:30:175:1.00:2	0/1:0,150:30:150:1.00:2	0/1:1,178:30:179:0.994:2	0/1:0,176:30:176:1.00:2	0/1:0,136:30:136:1.00:2	0/1:57,76:31:134:0.571:2	0/1:1,106:30:107:0.991:2
chr17	39619093	rs2604954	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,20:30:59:0.345:2	0/1:24,12:29:36:0.333:2	0/1:0,8:30:8:1.00:2	0/1:1,61:30:62:0.984:2	0/1:39,24:30:63:0.381:2	0/1:1,55:30:57:0.982:2	0/1:0,59:30:59:1.00:2	0/1:0,76:30:76:1.00:2	0/1:1,60:31:61:0.984:2	0/1:39,24:29:63:0.381:2	0/1:2,59:30:61:0.967:2
chr17	39619094	rs2604955	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,21:32:61:0.344:2	0/1:24,12:30:36:0.333:2	0/1:0,8:32:8:1.00:2	0/1:0,62:32:62:1.00:2	0/1:40,24:31:64:0.375:2	0/1:1,56:32:57:0.982:2	0/1:0,59:32:59:1.00:2	0/1:0,76:31:76:1.00:2	0/1:0,61:31:61:1.00:2	0/1:40,26:29:66:0.394:2	0/1:1,60:31:61:0.984:2
chr17	39619115	rs2071563	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,21:30:60:0.356:2	0/1:22,12:32:34:0.353:2	0/1:0,6:30:6:1.00:2	0/1:0,66:31:66:1.00:2	0/1:34,24:30:58:0.414:2	0/1:29,29:31:58:0.500:2	./.	0/1:2,82:31:84:0.976:2	./.	0/1:40,24:31:64:0.375:2	0/1:26,32:31:58:0.552:2
chr17	39619186	rs2604956	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,24:32:69:0.348:2
chr17	39619219	rs2857257	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,23:32:68:0.338:2	0/1:29,30:32:59:0.508:2	0/1:0,6:32:6:1.00:2	0/1:0,89:31:89:1.00:2	0/1:36,42:31:78:0.538:2	0/1:0,97:31:97:1.00:2	0/1:3,89:31:92:0.967:2	0/1:3,107:31:110:0.973:2	0/1:1,103:32:104:0.990:2	0/1:42,30:32:72:0.417:2	0/1:0,82:32:82:1.00:2
chr17	39620399	rs12948056	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:85,63:32:148:0.426:2	0/1:43,34:31:77:0.442:2	0/1:12,16:30:28:0.571:2	0/1:103,89:31:192:0.464:2	0/1:122,75:31:197:0.381:2	0/1:103,91:32:194:0.469:2	./.	0/1:5,179:31:184:0.973:2	./.	0/1:76,104:31:180:0.578:2	0/1:110,72:31:182:0.396:2
chr17	39620565	rs72830046	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:34,33:32:67:0.493:2	0/1:35,28:32:63:0.444:2	./.	./.	0/1:91,54:30:145:0.372:2	./.	./.	0/1:155,4:32:159:0.025:2	./.	0/1:66,34:32:100:0.340:2	./.
chr17	39622068	rs2071561	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:31,31:30:62:0.500:2	0/1:20,30:30:50:0.600:2	0/1:11,4:31:15:0.267:2	./.	0/1:38,39:29:77:0.506:2	0/1:50,36:29:86:0.419:2	0/1:0,96:29:97:1.00:2	./.	0/1:0,94:30:94:1.00:2	0/1:44,40:29:84:0.476:2	./.
chr17	39623363	rs3744786	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:20,30:28:50:0.600:2	0/1:22,13:28:35:0.371:2	./.	./.	0/1:33,27:30:60:0.450:2	./.	./.	./.	./.	0/1:32,15:28:47:0.319:2	./.
chr17	39633317	rs2239711	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,18:32:28:0.643:2	0/1:12,5:31:18:0.294:2	./.	0/1:29,16:32:45:0.356:2	0/1:28,12:32:40:0.300:2	0/1:0,34:32:34:1.00:2	0/1:2,27:30:29:0.931:2	./.	0/1:0,21:33:21:1.00:2	0/1:16,14:32:30:0.467:2	./.
chr17	39633349	rs2071601	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,18:29:37:0.486:2	0/1:20,7:32:27:0.259:2	./.	0/1:32,21:30:53:0.396:2	0/1:35,15:30:50:0.300:2	0/1:29,25:29:54:0.463:2	./.	./.	./.	0/1:21,20:30:41:0.488:2	./.
chr17	39633354	rs12451652	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,27:27:56:0.482:2	0/1:2,39:29:41:0.951:2	./.	0/1:0,47:30:47:1.00:2	./.	./.
chr17	39634625	rs7216017	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,25:30:44:0.568:2	0/1:13,14:32:27:0.519:2	./.	0/1:25,40:32:65:0.615:2	0/1:47,41:32:88:0.466:2	0/1:36,39:32:75:0.520:2	./.	./.	./.	0/1:24,32:31:56:0.571:2	./.
chr17	39635194	rs12936485	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,39:31:105:0.371:2	./.	./.	./.	./.	./.
chr17	39637244	rs743686	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,5:33:9:0.556:2	./.	./.	./.	0/1:14,6:32:20:0.300:2	0/1:8,8:31:16:0.500:2	./.	./.	./.	0/1:4,9:33:13:0.692:2	./.
chr17	39643340	rs11657323	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,36:32:91:0.396:2	./.	./.	./.	./.	./.
chr17	39643410	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:28:55:0.073:2	./.
chr17	39643646	rs2301354	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,11:29:28:0.393:2	0/1:6,6:31:12:0.500:2	./.	./.	0/1:33,28:31:61:0.459:2	0/1:23,22:31:45:0.489:2	./.	./.	./.	0/1:12,21:33:33:0.636:2	./.
chr17	39645800	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,3:35:97:0.031:2	./.	./.	./.	./.	./.	./.
chr17	39645847	rs188302666	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:30:63:0.063:2	./.
chr17	39646021	rs1003842	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,19:33:32:0.594:2	0/1:6,5:33:11:0.455:2	./.	./.	0/1:21,25:32:46:0.543:2	0/1:2,28:33:30:0.933:2	0/1:0,31:33:31:1.00:2	./.	0/1:0,28:33:28:1.00:2	0/1:22,17:32:39:0.436:2	./.
chr17	39657519	rs146666963	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,38:33:65:0.585:2
chr17	39657599	rs150321809	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,44:32:130:0.338:2	./.	./.	./.	./.
chr17	39659194	rs4796697	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:30:87:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,149:30:149:1.00:2	0/1:2,192:30:194:0.990:2	0/1:0,142:30:142:1.00:2	0/1:0,191:30:191:1.00:2	0/1:0,172:30:172:1.00:2	0/1:0,128:31:128:1.00:2	0/1:4,87:31:92:0.956:2	0/1:1,129:29:130:0.992:2
chr17	39659913	rs9891361	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:30:27:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,58:31:58:1.00:2	0/1:23,27:31:50:0.540:2
chr17	39661671	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:29:80:0.050:2	./.	./.	./.	./.	./.
chr17	39661689	rs8182306	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,76:31:76:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,93:32:93:1.00:2	0/1:1,90:32:91:0.989:2	0/1:0,46:33:46:1.00:2	0/1:1,63:33:64:0.984:2	0/1:0,51:33:51:1.00:2
chr17	39670912	rs897420	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:33:20:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,3:34:3:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,63:33:63:1.00:2	0/1:0,37:33:37:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,39:33:39:1.00:2
chr17	39671724	rs2305556	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:11,6:32:17:0.353:2	0/1:5,10:32:15:0.667:2	0/1:0,3:31:3:1.00:2	./.	0/1:19,10:33:29:0.345:2	./.	0/1:21,17:32:38:0.447:2	0/1:44,19:33:63:0.302:2	0/1:27,15:33:42:0.357:2	./.	0/1:15,8:30:23:0.348:2
chr17	39674641	rs1050784	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,52:33:123:0.426:2	0/1:35,33:33:69:0.485:2	0/1:14,3:34:17:0.176:2	0/1:0,134:33:135:1.00:2	0/1:0,143:33:143:1.00:2	0/1:0,112:32:112:1.00:2	0/1:111,59:33:171:0.347:2	0/1:100,78:33:179:0.438:2	0/1:83,69:34:152:0.454:2	0/1:0,119:33:119:1.00:2	0/1:78,57:32:136:0.422:2
chr17	39674711	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:33:138:0.029:2	./.	./.	./.
chr17	39674987	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,5:21:22:0.227:2
chr17	39681475	rs4601	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,19:26:48:0.396:2	0/1:20,13:29:33:0.394:2	./.	0/1:39,39:28:78:0.500:2	0/1:0,48:29:48:1.00:2	0/1:0,62:29:62:1.00:2	0/1:45,36:28:81:0.444:2	0/1:47,28:29:75:0.373:2	0/1:38,30:29:68:0.441:2	0/1:0,57:30:57:1.00:2	0/1:29,28:28:57:0.491:2
chr17	39684321	rs4602	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:5,6:28:11:0.545:2	./.	0/1:5,3:34:8:0.375:2	0/1:0,13:29:13:1.00:2	0/1:0,4:33:4:1.00:2	0/1:2,2:34:4:0.500:2	0/1:10,3:29:13:0.231:2	0/1:8,4:29:12:0.333:2	0/1:0,6:22:6:1.00:2	./.
chr17	39684410	rs11550883	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.
chr17	39723990	rs3890472	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:30:9:1.00:2	0/1:0,5:29:5:1.00:2	0/1:5,7:27:12:0.583:2	./.	0/1:13,6:29:19:0.316:2	0/1:6,7:30:13:0.538:2	0/1:12,3:32:15:0.200:2	0/1:0,14:30:14:1.00:2
chr17	39727816	rs8075921	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,49:30:49:1.00:2	0/1:0,42:31:42:1.00:2	0/1:25,24:28:49:0.490:2	./.	0/1:28,56:30:84:0.667:2	0/1:25,27:31:52:0.519:2	0/1:14,31:30:45:0.689:2	0/1:0,69:30:69:1.00:2
chr17	39728050	rs8070680	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,66:29:72:0.957:2	0/1:1,71:28:76:0.986:2	0/1:50,36:28:87:0.419:2	./.	0/1:83,42:28:126:0.336:2	0/1:42,33:28:76:0.440:2	0/1:35,29:28:67:0.453:2	0/1:0,37:29:38:1.00:2
chr17	39738752	rs11551760	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,29:32:66:0.439:2	0/1:30,15:31:45:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	39740548	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,5:31:67:0.075:2	./.	0/1:68,4:32:72:0.056:2	0/1:123,4:33:127:0.031:2	./.	./.	./.
chr17	39740552	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,5:30:67:0.075:2	./.	0/1:67,4:31:71:0.056:2	0/1:123,4:31:127:0.031:2	./.	./.	./.
chr17	39740575	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,5:28:97:0.052:2	./.	./.	./.	./.
chr17	39740613	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:33:124:0.032:2	./.	./.	./.
chr17	39740629	rs75795684	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.
chr17	39740630	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.
chr17	39742645	rs58378809	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:165,4:32:169:0.024:2	./.	./.	./.	./.	./.	./.
chr17	39742718	rs3826549	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,30:30:63:0.476:2	0/1:15,15:30:30:0.500:2	./.	0/1:16,74:30:90:0.822:2	0/1:16,90:29:106:0.849:2	0/1:45,46:29:91:0.505:2	0/1:96,5:28:101:0.050:2	0/1:57,53:29:110:0.482:2	0/1:43,40:31:83:0.482:2	0/1:40,29:29:69:0.420:2	0/1:6,42:28:48:0.875:2
chr17	39742778	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,5:28:57:0.088:2	./.	./.
chr17	39742794	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,5:29:49:0.102:2	./.	./.
chr17	39742807	rs3826550	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:28,16:28:44:0.364:2	0/1:10,10:28:20:0.500:2	0/1:0,7:28:7:1.00:2	./.	./.	0/1:37,22:26:59:0.373:2	0/1:1,52:28:53:0.981:2	0/1:60,15:29:75:0.200:2	0/1:36,12:27:48:0.250:2	0/1:10,15:30:25:0.600:2	./.
chr17	39742856	rs6503639	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:16,11:28:27:0.407:2	0/1:5,4:30:9:0.444:2	0/1:1,5:29:6:0.833:2	./.	./.	0/1:25,11:28:36:0.306:2	0/1:1,26:29:27:0.963:2	0/1:20,5:31:25:0.200:2	0/1:15,8:30:23:0.348:2	0/1:7,10:29:17:0.588:2	./.
chr17	39742894	rs3826551	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,5:29:11:0.455:2	0/1:1,4:29:5:0.800:2	./.	0/1:0,18:29:18:1.00:2	0/1:1,17:27:18:0.944:2	0/1:9,14:28:23:0.609:2	./.	./.	0/1:3,8:30:11:0.727:2	0/1:10,3:28:13:0.231:2	0/1:1,16:28:17:0.941:2
chr17	39742898	rs11551758	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,5:33:10:0.500:2	0/1:1,4:31:5:0.800:2	./.	0/1:0,16:30:16:1.00:2	0/1:1,16:28:17:0.941:2	0/1:8,13:29:21:0.619:2	./.	0/1:5,3:29:8:0.375:2	0/1:3,6:31:9:0.667:2	0/1:10,4:29:14:0.286:2	0/1:1,11:31:12:0.917:2
chr17	39742899	rs6503640	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,10:31:10:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,4:29:4:1.00:2	0/1:0,16:28:16:1.00:2	0/1:1,16:27:17:0.941:2	0/1:1,20:27:21:0.952:2	0/1:0,6:28:6:1.00:2	0/1:0,8:28:8:1.00:2	0/1:0,8:30:8:1.00:2	0/1:1,10:29:11:0.909:2	0/1:1,11:28:12:0.917:2
chr17	39742999	rs201069984	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,9:30:13:0.692:2	./.	./.	./.	./.	./.
chr17	39743081	rs11551759	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,6:23:8:0.750:2	./.	./.	0/1:0,10:30:10:1.00:2	0/1:0,10:22:10:1.00:2	0/1:6,10:28:16:0.625:2	./.	0/1:9,10:27:19:0.526:2	0/1:18,5:34:23:0.217:2	0/1:4,4:29:8:0.500:2	0/1:0,6:26:6:1.00:2
chr17	39766268	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:30:60:0.067:2	./.	./.	./.	./.	./.
chr17	39766504	rs7406899	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:32:70:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,122:32:122:1.00:2	0/1:0,104:33:104:1.00:2	0/1:46,35:32:81:0.432:2	0/1:0,79:32:79:1.00:2
chr17	39767624	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,4:30:89:0.045:2	./.	./.	./.	./.	./.	./.	./.
chr17	39767633	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,4:32:104:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr17	39767642	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,4:31:106:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr17	39767724	rs147423442	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:31:9:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	39767744	rs4796681	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:40,41:29:81:0.506:2	0/1:26,24:28:50:0.480:2	./.	0/1:0,90:28:90:1.00:2	0/1:1,92:29:93:0.989:2	0/1:40,50:28:90:0.556:2	./.	0/1:58,47:29:105:0.448:2	0/1:44,36:29:80:0.450:2	0/1:31,33:28:65:0.516:2	0/1:0,55:28:55:1.00:2
chr17	39767966	rs142750223	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,87:31:190:0.458:2	./.	./.	./.	./.	./.
chr17	39768566	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:71,6:31:77:0.078:2	0/1:50,5:30:55:0.091:2	./.	0/1:125,11:29:136:0.081:2	0/1:141,12:30:153:0.078:2	./.	./.	./.	./.	./.	0/1:93,5:30:98:0.051:2
chr17	39768642	rs140537366	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:28:59:0.068:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	39775870	rs117941474	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,72:31:188:0.383:2	./.	./.
chr17	39778658	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2	./.	./.	./.	./.	./.
chr17	39778722	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:182,4:32:186:0.022:2	./.	./.	./.	./.	./.	./.
chr17	39780753	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,12:30:22:0.545:2	./.	./.	./.	./.	./.	./.	./.
chr17	39871696	rs34309618	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,33:33:95:0.347:2	./.	./.
chr17	39871700	rs7220169	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:31:75:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,111:30:111:1.00:2	0/1:0,126:30:127:1.00:2	0/1:0,123:29:123:1.00:2	0/1:0,119:30:120:1.00:2	0/1:0,128:29:128:1.00:2	0/1:0,93:31:93:1.00:2	0/1:0,120:30:120:1.00:2	0/1:0,87:30:87:1.00:2
chr17	39872026	rs4290525	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,36:33:74:0.486:2	./.	./.
chr17	39874267	rs7218465	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,56:31:57:0.982:2	0/1:0,44:32:44:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,88:31:88:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,60:31:60:1.00:2	0/1:1,56:31:57:0.982:2	0/1:0,89:31:89:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,60:31:60:1.00:2
chr17	39874283	rs11079007	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,46:31:47:0.979:2	0/1:0,34:32:34:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,43:29:43:1.00:2	0/1:1,32:30:33:0.970:2	0/1:0,57:31:57:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,46:30:46:1.00:2
chr17	39880966	rs34381648	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,15:33:41:0.366:2	./.	./.
chr17	39881003	rs34044330	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,12:32:28:0.429:2	./.	./.
chr17	39881250	rs34453339	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,8:31:19:0.421:2	./.	./.	0/1:10,10:30:20:0.500:2	./.	./.	./.
chr17	39881289	rs8075017	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:32:20:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,21:29:21:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,23:31:23:1.00:2
chr17	39881299	rs34853043	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,11:31:26:0.423:2	./.	./.	0/1:10,12:30:22:0.545:2	./.	./.	./.
chr17	39881327	rs41314644	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,16:32:32:0.500:2	./.	./.	0/1:12,12:30:24:0.500:2	./.	./.	./.
chr17	39883350	rs4523977	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,21:30:29:0.750:2	./.	./.	./.
chr17	39883559	rs33914436	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,68:31:69:0.986:2	./.	./.	./.	0/1:43,42:32:85:0.494:2	./.	0/1:26,37:32:63:0.587:2	./.
chr17	39883595	rs7216154	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,37:30:73:0.507:2	0/1:24,18:30:42:0.429:2	./.	0/1:51,46:30:97:0.474:2	0/1:83,74:30:157:0.471:2	0/1:57,39:30:96:0.406:2	./.	0/1:5,116:30:121:0.959:2	0/1:50,53:30:103:0.515:2	0/1:42,40:29:82:0.488:2	0/1:0,87:30:87:1.00:2
chr17	39883672	rs11867808	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:30:3:1.00:2	0/1:36,36:31:72:0.500:2	0/1:70,66:30:136:0.485:2	0/1:3,88:30:91:0.967:2	0/1:0,124:31:124:1.00:2	0/1:62,59:31:121:0.488:2	0/1:0,85:31:85:1.00:2	./.	0/1:0,86:30:86:1.00:2
chr17	39884065	rs35612698	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,11:31:21:0.524:2	0/1:2,4:32:6:0.667:2	./.	./.	0/1:27,10:32:37:0.270:2	0/1:0,32:31:32:1.00:2	0/1:0,28:31:28:1.00:2	./.	0/1:1,31:32:32:0.969:2	./.	0/1:0,18:31:18:1.00:2
chr17	39884091	rs4796601	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,11:29:21:0.524:2	0/1:4,4:31:8:0.500:2	./.	0/1:0,31:30:31:1.00:2	0/1:28,11:30:39:0.282:2	0/1:0,25:29:25:1.00:2	0/1:0,28:31:28:1.00:2	0/1:15,33:29:48:0.688:2	0/1:0,22:30:22:1.00:2	./.	0/1:0,14:29:14:1.00:2
chr17	39884583	rs4796693	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,19:29:48:0.396:2	0/1:20,29:31:49:0.592:2	0/1:0,8:30:8:1.00:2	0/1:0,105:31:105:1.00:2	0/1:64,55:30:119:0.462:2	0/1:0,106:30:106:1.00:2	0/1:0,88:30:88:1.00:2	0/1:58,60:31:119:0.508:2	0/1:0,88:31:88:1.00:2	./.	0/1:0,71:31:71:1.00:2
chr17	39890715	rs4796603	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,8:30:22:0.381:2	0/1:4,5:30:9:0.556:2	0/1:0,3:31:3:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,31:29:31:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,42:31:42:1.00:2	./.	0/1:0,21:31:21:1.00:2
chr17	39912145	rs1126821	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,5:32:15:0.333:2	0/1:5,5:33:10:0.500:2	0/1:0,5:32:5:1.00:2	0/1:16,13:32:29:0.448:2	0/1:0,42:32:42:1.00:2	0/1:14,18:32:32:0.563:2	0/1:39,16:32:55:0.291:2	0/1:9,8:33:17:0.471:2	0/1:12,12:34:24:0.500:2	0/1:0,23:32:23:1.00:2	0/1:11,15:31:26:0.577:2
chr17	39925223	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:32:38:0.105:2
chr17	39925713	rs41283425	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,41:32:74:0.554:2	./.
chr17	39925925	rs7405731	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,13:31:31:0.419:2	0/1:10,5:30:15:0.333:2	0/1:0,3:32:3:1.00:2	0/1:14,19:31:33:0.576:2	0/1:27,46:31:73:0.630:2	0/1:0,32:32:32:1.00:2	0/1:29,20:32:49:0.408:2	./.	0/1:0,38:31:38:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,30:32:30:1.00:2
chr17	39959189	rs1065029	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:31:24:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,35:31:35:1.00:2	0/1:25,18:30:43:0.419:2	0/1:0,35:32:35:1.00:2	0/1:0,53:34:53:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,34:32:34:1.00:2
chr17	39967442	rs13412	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:28,39:29:67:0.582:2	0/1:16,18:28:34:0.529:2	./.	./.	./.	./.	0/1:63,59:30:122:0.484:2	./.	0/1:47,41:31:88:0.466:2	0/1:25,46:29:71:0.648:2	0/1:31,24:29:55:0.436:2
chr17	39974642	rs34764749	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,48:32:129:0.372:2
chr17	39983808	rs1046404	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,121:32:121:1.00:2	0/1:2,90:32:92:0.978:2	0/1:0,28:32:28:1.00:2	0/1:0,144:32:144:1.00:2	0/1:0,159:32:159:1.00:2	0/1:0,168:32:169:1.00:2	0/1:106,83:33:189:0.439:2	0/1:1,140:32:141:0.993:2	0/1:1,119:33:120:0.992:2	0/1:0,166:33:166:1.00:2	0/1:113,53:33:166:0.319:2
chr17	39983820	rs1046403	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,114:32:114:1.00:2	0/1:2,85:32:87:0.977:2	0/1:0,30:31:30:1.00:2	0/1:0,139:31:139:1.00:2	0/1:0,146:31:146:1.00:2	0/1:0,156:31:156:1.00:2	0/1:102,69:31:171:0.404:2	0/1:1,145:31:146:0.993:2	0/1:2,107:32:109:0.982:2	0/1:0,156:32:157:1.00:2	0/1:112,52:31:164:0.317:2
chr17	39983849	rs1128966	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:33:92:1.00:2	0/1:2,73:33:75:0.973:2	0/1:0,21:32:21:1.00:2	0/1:0,124:33:124:1.00:2	0/1:1,87:32:88:0.989:2	0/1:0,111:32:111:1.00:2	0/1:83,32:33:115:0.278:2	0/1:2,128:33:130:0.985:2	0/1:2,91:33:93:0.978:2	0/1:0,101:33:101:1.00:2	0/1:116,58:32:174:0.333:2
chr17	39987130	rs4796712	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:28:40:1.00:2	0/1:0,24:28:24:1.00:2	0/1:0,11:27:11:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,61:29:61:1.00:2	0/1:0,62:29:62:1.00:2	0/1:40,35:28:75:0.467:2	0/1:2,72:28:74:0.973:2	0/1:0,58:30:58:1.00:2	0/1:1,53:29:54:0.981:2	0/1:0,63:29:63:1.00:2
chr17	39998141	rs1529933	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,119:32:119:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,138:32:138:1.00:2	0/1:4,167:32:171:0.977:2	0/1:0,163:32:163:1.00:2	0/1:105,53:32:158:0.335:2	0/1:0,191:32:191:1.00:2	0/1:0,163:33:163:1.00:2	0/1:0,121:33:121:1.00:2	0/1:86,97:33:183:0.530:2
chr17	40001659	rs34933374	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:39,35:31:74:0.473:2	0/1:36,21:32:57:0.368:2	./.	./.	./.	./.	0/1:40,35:32:75:0.467:2	./.	./.	./.	./.
chr17	40010070	rs34684777	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,87:32:199:0.437:2	./.	./.	./.	./.
chr17	40010979	rs3744782	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,111:32:111:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,116:32:116:1.00:2	0/1:1,118:31:119:0.992:2	0/1:0,113:31:113:1.00:2	0/1:69,59:31:128:0.461:2	0/1:1,162:31:163:0.994:2	0/1:0,141:32:141:1.00:2	0/1:0,117:32:117:1.00:2	0/1:76,65:31:141:0.461:2
chr17	40048613	rs8065502	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,81:32:81:1.00:2	0/1:47,49:32:96:0.510:2	0/1:0,69:32:69:1.00:2	0/1:1,51:32:52:0.981:2	0/1:1,64:32:65:0.985:2	0/1:0,63:32:63:1.00:2
chr17	40049416	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,7:19:85:0.082:2	./.	./.
chr17	40052842	rs67473931	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,8:32:14:0.571:2
chr17	40062879	rs373894224	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,24:32:64:0.375:2	0/1:26,14:32:40:0.350:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	40065782	rs372205779	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,6:32:183:0.033:2	./.	./.
chr17	40086986	rs34516580	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	0/1:19,10:31:29:0.345:2	./.	./.	./.
chr17	40094835	rs3809878	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,25:31:51:0.490:2
chr17	40120256	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:32:138:0.029:2	./.	./.	./.
chr17	40125864	rs2070106	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:22:3:1.00:2	0/1:17,18:31:35:0.514:2	./.	./.	./.	0/1:0,46:30:46:1.00:2	./.	./.	./.
chr17	40139878	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:33:141:0.028:2	./.	./.
chr17	40139925	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:34:127:0.031:2	./.	./.
chr17	40142302	rs1127182	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,38:30:90:0.422:2
chr17	40146970	rs6503679	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:33:62:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,53:33:53:1.00:2	0/1:1,39:33:40:0.975:2	0/1:0,60:32:60:1.00:2	0/1:30,11:32:41:0.268:2	0/1:0,69:32:69:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,63:33:63:1.00:2	0/1:55,33:33:88:0.375:2
chr17	40178913	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:33:123:0.033:2
chr17	40189830	rs60110245	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,23:31:61:0.377:2	./.	./.	./.	0/1:31,30:30:61:0.492:2
chr17	40255743	rs112616358	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,8:25:20:0.400:2
chr17	40257163	rs2074158	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,26:30:43:0.605:2	0/1:12,12:30:24:0.500:2	0/1:4,4:26:8:0.500:2	0/1:35,32:28:67:0.478:2	./.	./.	./.	./.	./.	./.	./.
chr17	40263400	rs35118457	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:34,25:32:59:0.424:2	0/1:21,17:32:38:0.447:2	./.	0/1:45,36:32:81:0.444:2	./.	./.	./.	./.	./.	./.	./.
chr17	40263403	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:130,4:33:134:0.030:2	./.	./.	./.	./.	./.	./.
chr17	40263458	rs34891485	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,31:31:66:0.470:2
chr17	40263462	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:29:85:0.047:2	./.	./.	./.	./.	./.
chr17	40266939	rs17659391	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,69:31:171:0.406:2	./.	./.	./.
chr17	40269482	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,17:11:125:0.136:2	./.	./.	./.	./.	./.	0/1:49,6:22:55:0.109:2
chr17	40269768	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,5:24:82:0.061:2	./.	./.	./.	./.	./.
chr17	40274873	rs1122326	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,10:30:24:0.417:2	0/1:8,8:31:16:0.500:2	0/1:3,3:32:6:0.500:2	0/1:0,20:28:20:1.00:2	./.	./.	./.	./.	./.	./.	0/1:10,8:30:18:0.444:2
chr17	40280291	rs2230326	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:31:7:0.429:2	0/1:51,50:32:101:0.495:2	./.	./.	./.	./.	./.	./.	0/1:50,42:32:92:0.457:2
chr17	40312233	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:33:122:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	40312349	rs138917401	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,36:33:76:0.474:2	./.	./.
chr17	40322252	rs939881	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,16:28:36:0.444:2	./.	./.	./.	./.	./.	./.	./.
chr17	40341909	rs79309130	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,84:32:192:0.438:2	./.	./.	./.
chr17	40364026	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,6:27:188:0.032:2
chr17	40364167	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:164,5:29:170:0.030:2	./.	./.	./.	./.	./.	./.
chr17	40371387	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,10:31:75:0.133:2	./.	./.	./.	./.	./.	./.	./.
chr17	40452242	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,17:31:81:0.210:2	./.	./.	./.	./.	./.	./.	./.
chr17	40453355	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:32:123:0.033:2	./.
chr17	40458300	rs141500114	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:131,5:31:136:0.037:2	./.	./.	./.	./.	./.	./.	0/1:190,5:32:196:0.026:2	./.	./.	./.
chr17	40458441	rs2230124	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:128,5:32:133:0.038:2	./.	./.	./.	./.	./.	./.
chr17	40459737	rs1135669	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,33:30:74:0.446:2	./.	0/1:1,49:30:50:0.980:2	./.
chr17	40461061	rs28395855	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,5:33:78:0.064:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	40461084	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,5:29:86:0.058:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	40461090	rs369052965	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,5:32:89:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	40632729	rs41283429	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,19:31:49:0.388:2	./.	./.	./.	./.	./.	./.	./.
chr17	40689455	rs659497	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,107:32:107:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,123:33:123:1.00:2	0/1:0,188:32:188:1.00:2	0/1:90,82:32:172:0.477:2	0/1:0,188:33:188:1.00:2	0/1:0,183:32:183:1.00:2	0/1:0,156:33:156:1.00:2	0/1:0,106:33:106:1.00:2	0/1:0,110:33:110:1.00:2
chr17	40696233	rs86312	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,6:31:6:1.00:2	0/1:0,5:30:5:1.00:2	./.	0/1:7,3:30:10:0.300:2	0/1:0,5:31:5:1.00:2	./.	0/1:0,5:31:5:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,16:29:16:1.00:2
chr17	40704960	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,25:32:71:0.352:2	./.	./.	./.	./.
chr17	40714804	rs615942	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:23,8:31:31:0.258:2	0/1:9,8:29:17:0.471:2	./.	0/1:15,20:28:35:0.571:2	./.	0/1:20,18:29:38:0.474:2	./.	0/1:24,15:28:39:0.385:2	0/1:24,21:30:45:0.467:2	0/1:10,11:30:21:0.524:2	0/1:13,19:30:32:0.594:2
chr17	40714951	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,3:34:64:0.047:2	./.	./.	./.
chr17	40716520	rs598126	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:26,32:31:58:0.552:2	0/1:7,8:30:15:0.533:2	./.	0/1:40,23:32:63:0.365:2	./.	0/1:25,31:30:56:0.554:2	./.	0/1:20,30:30:50:0.600:2	0/1:26,19:31:45:0.422:2	0/1:23,18:31:41:0.439:2	0/1:23,25:31:48:0.521:2
chr17	40717961	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,48:31:104:0.462:2	./.	./.	./.	./.	./.
chr17	40722029	rs665268	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:47,43:28:92:0.478:2	0/1:28,21:26:50:0.429:2	0/1:13,3:29:16:0.188:2	./.	./.	0/1:54,64:28:118:0.542:2	./.	0/1:123,5:28:128:0.039:2	./.	0/1:52,41:27:93:0.441:2	0/1:56,43:28:99:0.434:2
chr17	40722162	rs1474040	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:67,57:31:124:0.460:2	0/1:38,36:32:74:0.486:2	0/1:6,7:31:13:0.538:2	./.	0/1:1,165:31:166:0.994:2	./.	0/1:1,141:31:142:0.993:2	0/1:73,78:32:151:0.517:2	0/1:69,73:32:142:0.514:2	0/1:80,66:31:146:0.452:2	0/1:74,64:32:138:0.464:2
chr17	40729267	rs139657728	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,70:30:147:0.476:2	./.	./.	./.	./.	./.	./.
chr17	40766546	rs1045710	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:43,42:31:85:0.494:2	0/1:24,16:31:40:0.400:2	./.	0/1:72,49:32:123:0.405:2	./.	0/1:80,47:31:127:0.370:2	./.	0/1:89,51:32:140:0.364:2	0/1:83,35:32:118:0.297:2	0/1:53,39:31:92:0.424:2	0/1:69,37:32:107:0.349:2
chr17	40766577	rs374890078	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:35:106:0.038:2
chr17	40766624	rs140239168	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:104,5:33:110:0.046:2	./.	./.	0/1:163,6:32:169:0.036:2	./.	0/1:150,9:32:159:0.057:2	./.	0/1:179,8:31:187:0.043:2	0/1:162,5:33:167:0.030:2	0/1:138,5:33:143:0.035:2	./.
chr17	40811919	rs525911	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:67,28:31:95:0.295:2	0/1:28,21:32:49:0.429:2	0/1:21,9:30:30:0.300:2	0/1:116,48:30:164:0.293:2	./.	0/1:119,48:30:167:0.287:2	./.	0/1:120,34:31:154:0.221:2	0/1:109,43:33:152:0.283:2	0/1:79,29:31:110:0.269:2	0/1:84,42:31:126:0.333:2
chr17	40818353	rs523338	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:75,12:30:87:0.138:2	0/1:41,6:32:47:0.128:2	./.	0/1:115,14:32:129:0.109:2	0/1:123,5:33:128:0.039:2	0/1:106,19:31:125:0.152:2	./.	0/1:148,16:31:164:0.098:2	0/1:118,28:30:146:0.192:2	0/1:89,6:30:95:0.063:2	0/1:130,14:32:144:0.097:2
chr17	40818367	rs140417748	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,56:31:137:0.409:2	./.	./.	./.	./.	./.	./.
chr17	40818451	rs1554227	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,47:31:134:0.351:2	0/1:47,32:32:79:0.405:2	0/1:9,16:31:25:0.640:2	0/1:96,82:32:178:0.461:2	./.	0/1:90,63:32:153:0.412:2	./.	0/1:103,72:32:175:0.411:2	0/1:98,66:33:164:0.402:2	0/1:79,53:32:132:0.402:2	0/1:87,56:32:143:0.392:2
chr17	40818699	rs1046097	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:68,41:30:109:0.376:2	0/1:26,22:30:48:0.458:2	./.	0/1:72,45:29:117:0.385:2	./.	0/1:92,86:28:178:0.483:2	./.	0/1:73,93:29:166:0.560:2	0/1:81,67:31:148:0.453:2	0/1:63,46:29:109:0.422:2	0/1:72,49:29:121:0.405:2
chr17	40823367	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,11:12:56:0.196:2	./.	./.
chr17	40825423	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:31:58:0.069:2	./.	./.
chr17	40832326	rs201963186	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,20:10:127:0.160:2	./.	./.	./.	./.
chr17	40835922	rs2271029	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:9,6:31:15:0.400:2	0/1:7,7:31:14:0.500:2	./.	0/1:0,21:30:21:1.00:2	./.	0/1:0,24:28:24:1.00:2	./.	0/1:18,10:29:28:0.357:2	0/1:19,11:29:30:0.367:2	0/1:9,8:28:17:0.471:2	0/1:17,4:29:21:0.190:2
chr17	40838068	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:31:146:0.027:2
chr17	40840566	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,5:27:139:0.036:2	./.	./.	./.	./.
chr17	40842142	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,5:30:199:0.025:2	./.	./.	./.	./.	./.
chr17	40842762	rs1553469	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,30:33:63:0.476:2	./.	0/1:42,29:32:71:0.408:2	./.	./.	./.	./.	./.
chr17	40843515	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,49:31:102:0.480:2	./.	./.	./.	./.	./.
chr17	40870056	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,5:33:164:0.030:2	./.
chr17	40870514	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,3:34:66:0.045:2
chr17	40926695	rs2305218	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,31:31:75:0.413:2	./.	./.	./.
chr17	40930984	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,29:32:65:0.446:2	0/1:25,14:32:39:0.359:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	40933259	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:33:153:0.026:2	./.	./.
chr17	40939472	rs55751736	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,33:28:50:0.660:2	./.	./.	./.	./.	./.	./.	./.
chr17	40940198	rs368434117	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:33:57:0.070:2	./.
chr17	41004637	rs33986943	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,64:31:151:0.424:2	0/1:64,39:31:103:0.379:2	./.	./.	./.	0/1:112,81:31:193:0.420:2	./.	./.	./.	./.	./.
chr17	41116155	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,9:28:22:0.409:2	./.	./.	./.	./.	./.	./.
chr17	41116234	rs690941	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:33:19:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,2:33:2:1.00:2	0/1:1,38:32:39:0.974:2	0/1:0,23:31:23:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,36:32:36:1.00:2
chr17	41121208	rs200866171	G	C,T	.	PASS	AC=3,2;AF=0.200,0.133;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant10-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	0/2:33:16:0.375:2	0/2:30:14:0.929:2	./.	./.	./.	./.	./.	0/1:29:25:0.480:2	./.	0/1:27:14:0.643:2	0/1:29:42:0.500:2
chr17	41121217	rs372902883	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,18:30:18:1.00:2	0/1:0,13:31:13:1.00:2	./.	0/1:0,11:28:11:1.00:2	0/1:2,14:30:16:0.875:2	0/1:3,23:27:26:0.885:2	0/1:2,9:29:11:0.818:2	0/1:3,19:30:22:0.864:2	0/1:0,12:30:12:1.00:2	0/1:0,13:32:13:1.00:2	0/1:3,37:31:40:0.925:2
chr17	41121218	rs74698098	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:15,3:31:18:0.167:2	./.	./.	./.	0/1:11,5:29:16:0.313:2	./.	0/1:2,9:29:11:0.818:2	./.	0/1:6,6:29:12:0.500:2	0/1:9,4:32:13:0.308:2	./.
chr17	41131645	rs35444712	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,67:32:130:0.515:2	./.	./.	0/1:31,35:33:66:0.530:2	./.
chr17	41133071	rs1708875	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	0/1:0,2:28:2:1.00:2	./.	./.	0/1:0,5:30:5:1.00:2	0/1:0,2:30:2:1.00:2	./.
chr17	41165493	rs588703	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:31:76:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,95:31:95:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,96:31:96:1.00:2	0/1:0,100:33:100:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,64:31:64:1.00:2
chr17	41165632	rs150695787	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,88:33:153:0.575:2	./.
chr17	41165802	rs146311145	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,27:30:59:0.458:2	./.	./.	./.	./.
chr17	41165878	rs13229	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:32:30:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,7:28:7:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,51:32:51:1.00:2
chr17	41169891	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:32:106:0.038:2	./.	./.
chr17	41174025	rs2070835	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,37:28:95:0.389:2	0/1:56,33:29:89:0.371:2	0/1:0,38:27:38:1.00:2	./.	0/1:57,48:28:106:0.457:2	0/1:2,41:27:43:0.953:2	./.
chr17	41201141	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:32:126:0.032:2	./.	./.	./.
chr17	41223037	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:32:167:0.024:2	./.	./.	./.	./.	./.
chr17	41223094	rs1799966	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,29:32:73:0.397:2	0/1:40,51:32:91:0.560:2	0/1:0,75:32:75:1.00:2	./.	0/1:45,50:32:95:0.526:2	0/1:2,74:32:76:0.974:2	./.
chr17	41226423	rs55815649	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,53:31:145:0.366:2	./.	./.	./.
chr17	41234470	rs1060915	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,66:31:141:0.468:2	0/1:71,67:33:138:0.486:2	0/1:3,140:33:143:0.979:2	./.	0/1:79,80:34:159:0.503:2	0/1:0,95:33:95:1.00:2	./.
chr17	41244000	rs16942	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,23:32:37:0.622:2	0/1:35,18:32:53:0.340:2	0/1:0,36:32:36:1.00:2	./.	0/1:39,30:33:69:0.435:2	0/1:29,17:32:46:0.370:2	./.
chr17	41244429	rs4986852	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:31:14:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	41244435	rs16941	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,28:31:54:0.519:2	0/1:43,31:32:74:0.419:2	0/1:0,42:32:42:1.00:2	./.	0/1:44,36:31:80:0.450:2	0/1:0,62:32:62:1.00:2	./.
chr17	41244833	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:33:85:0.047:2	./.	./.	./.	./.
chr17	41244936	rs799917	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,36:32:81:0.444:2	0/1:56,49:32:105:0.467:2	0/1:2,54:33:56:0.964:2	./.	0/1:58,61:33:119:0.513:2	0/1:40,43:33:83:0.518:2	./.
chr17	41245237	rs16940	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,48:31:99:0.485:2	0/1:64,62:32:126:0.492:2	0/1:0,85:32:85:1.00:2	./.	0/1:88,72:33:160:0.450:2	0/1:68,65:33:133:0.489:2	./.
chr17	41245466	rs1799949	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,64:30:148:0.432:2	0/1:102,84:31:187:0.452:2	0/1:2,115:31:117:0.983:2	./.	0/1:106,84:32:192:0.442:2	0/1:102,89:31:192:0.466:2	./.
chr17	41245471	rs4986850	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,46:31:122:0.377:2	./.	./.	0/1:108,86:31:194:0.443:2	./.
chr17	41246481	rs1799950	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,35:28:90:0.389:2	./.	./.	./.	0/1:61,65:30:126:0.516:2	./.	./.
chr17	41246705	rs80357792	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:33:190:0.021:2	./.
chr17	41291953	rs11657835	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,24:32:37:0.649:2	0/1:38,29:31:67:0.433:2	0/1:0,41:33:41:1.00:2	./.	0/1:47,32:34:79:0.405:2	0/1:0,55:33:55:1.00:2	./.
chr17	41330024	rs11657883	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,24:31:61:0.393:2	0/1:73,60:31:133:0.451:2	0/1:0,83:32:83:1.00:2	./.	0/1:74,58:33:133:0.439:2	0/1:0,100:32:100:1.00:2	./.
chr17	41331460	rs11653231	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,15:31:46:0.326:2	0/1:49,42:30:91:0.462:2	0/1:0,44:31:44:1.00:2	./.	0/1:52,42:31:94:0.447:2	0/1:2,53:31:55:0.964:2	./.
chr17	41332804	rs9904555	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,7:32:7:1.00:2	0/1:0,3:33:3:1.00:2	./.	0/1:0,5:34:5:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,2:30:2:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,5:33:5:1.00:2
chr17	41342698	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:132,4:32:136:0.029:2	./.	./.	./.	./.	./.	./.
chr17	41352520	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,7:19:67:0.104:2	./.	0/1:57,10:16:67:0.149:2	./.	./.	./.
chr17	41361960	rs8482	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,28:28:81:0.346:2	0/1:34,28:28:62:0.452:2	0/1:4,70:28:74:0.946:2	./.	0/1:41,28:29:69:0.406:2	0/1:0,47:28:47:1.00:2	./.
chr17	41477710	rs3179287	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:29:9:1.00:2	0/1:30,21:28:51:0.412:2	0/1:37,26:28:63:0.413:2	./.	./.	./.	0/1:0,50:29:50:1.00:2	./.	./.
chr17	41477900	rs143430693	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,65:33:146:0.445:2	./.	./.	./.	./.	./.	./.	./.
chr17	41478085	rs181070937	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:34:68:0.060:2	./.
chr17	41478455	rs12946015	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:32:5:1.00:2	0/1:9,12:32:21:0.571:2	./.	./.	./.	./.	0/1:0,22:33:22:1.00:2	./.	./.
chr17	41598879	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,6:33:124:0.049:2	./.	./.
chr17	41606072	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:29:86:0.047:2	./.
chr17	41738823	rs9898682	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,7:31:20:0.350:2	./.	./.	0/1:14,4:30:18:0.222:2	./.	./.	./.	./.
chr17	41879074	rs17742683	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,28:30:62:0.452:2	./.	./.	0/1:46,33:29:79:0.418:2	./.	0/1:51,30:30:81:0.370:2	0/1:16,26:30:42:0.619:2	0/1:43,26:30:69:0.377:2
chr17	41891437	rs17742929	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:20,17:32:37:0.459:2	0/1:6,10:32:16:0.625:2	./.	./.	./.	./.	0/1:30,31:32:61:0.508:2	./.	0/1:35,25:32:60:0.417:2	./.	./.
chr17	41901366	rs189143886	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:29:16:0.563:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	41931212	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:32:60:0.067:2	./.
chr17	41931375	rs12453522	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:28,19:28:47:0.404:2	0/1:8,16:31:24:0.667:2	./.	./.	./.	./.	0/1:44,31:30:75:0.413:2	./.	0/1:37,26:31:63:0.413:2	./.	./.
chr17	41958136	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:32:117:0.034:2
chr17	41958861	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:34:104:0.038:2
chr17	41959687	rs148337292	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	41959808	rs124721	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,15:33:51:0.294:2	0/1:19,12:33:31:0.387:2	0/1:0,11:34:11:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,114:32:114:1.00:2	0/1:0,96:33:96:1.00:2	0/1:53,35:32:88:0.398:2	0/1:0,85:32:85:1.00:2	0/1:36,34:34:70:0.486:2	0/1:0,64:33:64:1.00:2	0/1:0,35:31:35:1.00:2
chr17	41960343	rs124719	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,21:28:45:0.467:2	0/1:16,15:27:31:0.484:2	0/1:0,6:28:6:1.00:2	0/1:0,73:28:73:1.00:2	0/1:0,69:28:69:1.00:2	0/1:0,77:29:77:1.00:2	0/1:49,49:30:98:0.500:2	0/1:3,94:28:97:0.969:2	0/1:29,39:29:68:0.574:2	0/1:0,74:29:74:1.00:2	0/1:0,65:28:65:1.00:2
chr17	41960633	rs412849	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:32:20:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,2:35:2:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,13:31:13:1.00:2
chr17	41960634	rs440755	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:32:20:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,2:35:2:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,13:32:13:1.00:2
chr17	42030531	rs1058046	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:20,14:32:34:0.412:2	0/1:14,10:32:24:0.417:2	./.	0/1:39,44:33:83:0.530:2	./.	0/1:53,28:33:81:0.346:2	0/1:4,26:32:30:0.867:2	0/1:52,35:33:87:0.402:2	0/1:53,31:33:84:0.369:2	0/1:31,27:32:58:0.466:2	0/1:40,34:32:74:0.459:2
chr17	42030743	rs229969	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:30:95:1.00:2	0/1:0,56:30:56:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,136:30:136:1.00:2	0/1:0,106:30:106:1.00:2	0/1:0,157:30:157:1.00:2	0/1:0,77:30:77:1.00:2	0/1:0,104:29:104:1.00:2	0/1:0,128:30:128:1.00:2	0/1:0,108:30:108:1.00:2	0/1:0,61:28:61:1.00:2
chr17	42084067	rs55708447	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,27:33:27:1.00:2	0/1:7,13:32:20:0.650:2	0/1:15,7:32:22:0.318:2
chr17	42091809	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:33:80:0.050:2	./.	./.
chr17	42091891	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:32:79:0.051:2	./.
chr17	42092267	rs35301047	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,71:32:190:0.374:2	./.	./.
chr17	42164885	rs228757	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,27:32:66:0.409:2	0/1:22,16:32:38:0.421:2	0/1:7,8:33:15:0.533:2	0/1:74,49:32:123:0.398:2	0/1:2,89:32:91:0.978:2	0/1:53,69:32:122:0.566:2	0/1:88,59:32:147:0.401:2	0/1:80,70:32:150:0.467:2	0/1:1,103:33:104:0.990:2	0/1:1,96:32:97:0.990:2	0/1:57,46:32:103:0.447:2
chr17	42168795	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:115,12:14:127:0.094:2	./.	./.	./.	./.	./.	./.
chr17	42171052	rs146365116	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,6:29:45:0.136:2
chr17	42225547	rs227584	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,39:32:81:0.481:2	0/1:20,19:32:39:0.487:2	0/1:13,3:35:16:0.188:2	0/1:33,62:31:95:0.653:2	./.	0/1:51,43:33:94:0.457:2	0/1:60,45:32:105:0.429:2	0/1:70,81:32:151:0.536:2	./.	./.	0/1:63,30:31:93:0.323:2
chr17	42225868	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,30:32:63:0.476:2	./.	./.
chr17	42239228	rs116304501	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,43:32:108:0.398:2	./.	./.	./.	./.	./.	./.	./.
chr17	42248346	rs7218599	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,27:31:55:0.491:2	0/1:11,20:31:31:0.645:2	0/1:0,10:31:10:1.00:2	0/1:0,75:31:75:1.00:2	0/1:45,38:30:83:0.458:2	0/1:0,91:30:91:1.00:2	0/1:0,75:30:75:1.00:2	0/1:44,40:30:84:0.476:2	0/1:27,44:31:71:0.620:2	0/1:31,40:31:71:0.563:2	0/1:28,23:31:51:0.451:2
chr17	42254417	rs7212854	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	42254527	rs7217858	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:30:2:1.00:2	0/1:2,4:26:6:0.667:2	./.	./.	./.	./.	./.	./.	./.
chr17	42255097	rs3826412	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,22:32:46:0.478:2	0/1:15,18:29:33:0.545:2	0/1:5,8:32:13:0.615:2	0/1:53,31:32:84:0.369:2	./.	0/1:47,38:31:85:0.447:2	0/1:65,39:31:104:0.375:2	0/1:61,41:32:102:0.402:2	./.	./.	0/1:27,32:31:59:0.542:2
chr17	42267892	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,18:31:62:0.290:2	./.	./.	./.	./.	./.	./.	./.
chr17	42268160	rs200978227	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:100,22:17:122:0.180:2	./.	./.	0/1:126,16:15:144:0.113:2	0/1:122,19:12:143:0.135:2	0/1:128,15:13:143:0.105:2	0/1:120,16:13:137:0.118:2	./.	0/1:133,19:13:153:0.125:2	0/1:104,26:18:130:0.200:2	0/1:87,13:15:100:0.130:2
chr17	42274295	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,13:15:103:0.127:2
chr17	42284688	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:32:45:0.089:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	42287519	rs2071167	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,68:31:155:0.439:2	0/1:46,37:32:83:0.446:2	0/1:17,10:30:27:0.370:2	0/1:1,182:32:183:0.995:2	./.	0/1:111,80:31:191:0.419:2	./.	0/1:124,70:31:194:0.361:2	./.	./.	0/1:111,80:31:191:0.419:2
chr17	42288717	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:32:104:0.038:2
chr17	42327850	rs45519733	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,17:31:39:0.436:2	./.	./.	./.	./.
chr17	42327861	rs201265160	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,7:31:25:0.280:2
chr17	42335135	rs5017	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,56:29:101:0.554:2	0/1:42,37:30:79:0.468:2	./.	./.	./.	0/1:50,50:31:100:0.500:2	./.	./.
chr17	42335899	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:128:0.031:2	./.	./.	./.	./.	./.
chr17	42338993	rs45562031	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,80:31:187:0.428:2	./.	./.
chr17	42392622	rs708386	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,26:29:78:0.333:2	0/1:79,51:29:130:0.392:2	./.	0/1:40,24:29:64:0.375:2	0/1:44,43:29:87:0.494:2	./.	0/1:38,9:27:47:0.191:2	./.
chr17	42392894	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:30:63:0.063:2	./.	./.	./.	./.	./.
chr17	42398002	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:31:88:0.045:2	./.	./.
chr17	42398052	rs2011951	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,32:32:65:0.492:2	0/1:49,44:33:93:0.473:2	./.	0/1:48,35:33:83:0.422:2	0/1:50,40:32:90:0.444:2	./.	0/1:25,31:33:56:0.554:2	./.
chr17	42398802	rs34365655	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:22,27:31:49:0.551:2	0/1:11,7:31:18:0.389:2	./.	./.	./.	./.	./.	./.	./.	0/1:18,19:32:37:0.514:2	./.
chr17	42400157	rs76073410	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,47:30:120:0.392:2	./.	0/1:52,27:32:79:0.342:2	./.	./.
chr17	42426641	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:27:61:0.066:2	./.	./.	./.	./.
chr17	42431524	rs140882895	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:35:2:1.00:2	./.	./.	./.	./.
chr17	42437000	rs71371993	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,13:33:27:0.481:2	./.	./.	./.	./.	./.	./.	./.
chr17	42449769	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,3:33:53:0.057:2	./.	./.	./.	./.	./.
chr17	42449789	rs5910	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,10:31:23:0.435:2	0/1:9,10:32:19:0.526:2	0/1:0,5:29:5:1.00:2	0/1:20,33:31:53:0.623:2	./.	0/1:0,35:30:35:1.00:2	0/1:22,32:30:54:0.593:2	0/1:16,24:31:40:0.600:2	0/1:0,53:32:53:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,53:30:53:1.00:2
chr17	42453065	rs5911	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:11,11:33:22:0.500:2	0/1:6,8:32:14:0.571:2	./.	0/1:8,10:31:18:0.556:2	./.	0/1:0,15:33:15:1.00:2	0/1:14,9:31:23:0.391:2	0/1:12,9:31:21:0.429:2	0/1:0,14:32:14:1.00:2	0/1:1,12:30:13:0.923:2	0/1:0,21:32:21:1.00:2
chr17	42453084	rs74988902	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,7:31:15:0.467:2	./.	./.	./.	./.	./.
chr17	42453267	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,3:35:68:0.044:2	./.
chr17	42454463	rs850730	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,7:33:19:0.368:2	0/1:6,5:32:11:0.455:2	0/1:0,5:33:5:1.00:2	0/1:25,13:32:38:0.342:2	./.	0/1:0,29:33:29:1.00:2	0/1:20,23:32:43:0.535:2	0/1:24,15:32:39:0.385:2	0/1:0,21:32:21:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,28:32:28:1.00:2
chr17	42463054	rs76066357	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,14:29:22:0.636:2	./.	./.	./.	./.	./.	./.	./.
chr17	42475052	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:147,15:13:162:0.093:2	./.	./.	0/1:144,19:13:163:0.117:2	./.	./.	./.
chr17	42475405	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:33:136:0.029:2	./.
chr17	42475962	rs936018	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,27:32:68:0.397:2	./.	./.
chr17	42475983	rs936019	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:38,38:31:76:0.500:2	0/1:24,22:28:46:0.478:2	./.	0/1:29,31:30:60:0.517:2	0/1:0,43:31:43:1.00:2	0/1:37,35:29:72:0.486:2	0/1:20,24:31:44:0.545:2	0/1:34,20:30:54:0.370:2	0/1:27,36:31:63:0.571:2	0/1:36,15:29:52:0.294:2	0/1:0,59:30:59:1.00:2
chr17	42476409	rs3744427	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,14:32:41:0.341:2	./.	./.	0/1:16,23:31:39:0.590:2	0/1:15,8:31:23:0.348:2	0/1:21,17:32:38:0.447:2
chr17	42552212	rs79170331	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,11:14:82:0.134:2	0/1:83,8:21:91:0.088:2
chr17	42734588	rs144837294	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,33:32:111:0.297:2	./.	./.	./.	./.
chr17	42744238	rs9907151	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,11:28:11:1.00:2	./.	./.	0/1:8,5:33:13:0.385:2	0/1:4,5:31:9:0.556:2	./.
chr17	42745515	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,15:12:120:0.126:2	./.	./.	./.	./.	./.
chr17	42786213	rs61749923	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:26,20:30:46:0.435:2	0/1:12,16:32:28:0.571:2	./.	0/1:30,28:31:58:0.483:2	./.	./.	./.	./.	0/1:31,16:32:47:0.340:2	./.	./.
chr17	42851729	rs35936481	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,23:30:48:0.489:2	0/1:8,10:29:19:0.556:2	0/1:0,9:30:9:1.00:2	0/1:40,49:31:89:0.551:2	0/1:0,52:30:52:1.00:2	./.	0/1:0,47:30:47:1.00:2	0/1:0,64:30:64:1.00:2	0/1:25,43:32:68:0.632:2	./.	0/1:0,31:30:31:1.00:2
chr17	42852061	rs12942192	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,24:32:57:0.421:2	0/1:16,13:33:29:0.448:2	./.	./.	./.	0/1:2,86:31:88:0.977:2	./.	./.	0/1:43,38:33:81:0.469:2	0/1:0,96:32:96:1.00:2	./.
chr17	42852604	rs1558083	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,38:31:73:0.528:2	0/1:17,18:32:35:0.514:2	0/1:0,11:32:11:1.00:2	0/1:65,59:32:124:0.476:2	0/1:0,111:31:111:1.00:2	./.	0/1:2,113:31:115:0.983:2	0/1:0,133:31:133:1.00:2	0/1:61,57:32:118:0.483:2	./.	0/1:0,78:32:78:1.00:2
chr17	42852610	rs1558084	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:32:72:1.00:2	0/1:2,33:33:35:0.943:2	0/1:0,10:33:10:1.00:2	0/1:0,115:33:115:1.00:2	0/1:0,116:32:116:1.00:2	0/1:0,97:32:97:1.00:2	0/1:2,120:33:122:0.984:2	0/1:0,141:32:141:1.00:2	0/1:0,116:34:116:1.00:2	0/1:0,98:33:98:1.00:2	0/1:0,81:33:81:1.00:2
chr17	42854610	rs8075210	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,8:28:13:0.615:2	0/1:7,8:30:15:0.533:2	0/1:0,2:31:2:1.00:2	0/1:21,12:30:33:0.364:2	0/1:0,34:28:34:1.00:2	./.	0/1:0,18:27:18:1.00:2	0/1:0,47:29:47:1.00:2	0/1:15,8:27:23:0.348:2	./.	0/1:1,17:29:18:0.944:2
chr17	42855554	rs2070605	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,27:29:68:0.397:2	0/1:23,16:29:39:0.410:2	0/1:0,10:30:10:1.00:2	0/1:87,49:30:136:0.360:2	0/1:0,139:29:139:1.00:2	./.	0/1:4,164:29:168:0.976:2	0/1:0,148:29:148:1.00:2	0/1:71,54:30:125:0.432:2	./.	0/1:0,75:28:75:1.00:2
chr17	42925559	rs12164	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,2:32:2:1.00:2	0/1:29,40:32:69:0.580:2	./.	0/1:0,32:31:32:1.00:2	0/1:25,29:32:54:0.537:2	./.	0/1:0,53:32:53:1.00:2	0/1:0,31:32:31:1.00:2	./.
chr17	42927721	rs1071682	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,24:31:24:1.00:2	0/1:0,6:32:6:1.00:2	./.	./.	./.	0/1:0,37:32:37:1.00:2	./.	./.	0/1:0,28:31:28:1.00:2	0/1:0,13:32:13:1.00:2	./.
chr17	42929092	rs199868353	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,10:12:35:0.286:2	./.	0/1:36,11:12:47:0.234:2	./.	0/1:36,9:13:46:0.200:2
chr17	42945662	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,6:30:97:0.062:2	./.
chr17	42953409	rs2289674	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,13:29:51:0.255:2	0/1:19,21:30:40:0.525:2	0/1:0,9:29:9:1.00:2	0/1:37,38:30:75:0.507:2	./.	./.	0/1:45,53:30:100:0.541:2	./.	./.	0/1:38,38:31:76:0.500:2	./.
chr17	42961009	rs2289677	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:33:59:1.00:2	0/1:1,24:33:25:0.960:2	0/1:0,6:32:6:1.00:2	0/1:42,36:33:78:0.462:2	./.	0/1:2,72:32:74:0.973:2	0/1:56,22:33:78:0.282:2	./.	0/1:0,67:33:67:1.00:2	0/1:1,57:33:58:0.983:2	./.
chr17	42964016	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,5:28:192:0.026:2	./.	./.	./.	./.	./.
chr17	42979670	rs8079610	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,33:30:68:0.485:2	./.	./.	0/1:1,44:31:45:0.978:2	0/1:27,16:31:43:0.372:2	./.
chr17	42981654	rs3826425	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,30:30:70:0.429:2	./.	./.	0/1:0,78:31:79:1.00:2	0/1:28,19:29:47:0.404:2	./.
chr17	42982288	rs3744473	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,43:28:90:0.478:2	./.	./.	0/1:0,91:29:92:1.00:2	0/1:47,48:27:95:0.505:2	./.
chr17	42982729	rs12222	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,69:31:126:0.548:2	./.	./.	0/1:1,126:33:127:0.992:2	0/1:44,49:32:93:0.527:2	./.
chr17	42984687	rs11558961	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,43:30:97:0.448:2	./.	./.	0/1:1,94:32:95:0.989:2	0/1:49,43:31:92:0.467:2	./.
chr17	42987512	rs78994946	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,94:31:191:0.492:2	./.	./.	./.	./.	./.	./.
chr17	42987523	rs9908084	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,83:30:189:0.439:2	./.	./.	0/1:6,171:30:177:0.966:2	0/1:105,76:28:181:0.420:2	./.
chr17	42987524	rs9916491	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:180,4:33:184:0.022:2	./.	./.	./.	0/1:107,81:30:188:0.431:2	./.	./.	0/1:4,173:32:177:0.977:2	0/1:106,77:30:183:0.421:2	./.
chr17	42989088	rs2289681	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:25,20:30:45:0.444:2	0/1:15,11:29:26:0.423:2	./.	0/1:30,29:30:59:0.492:2	./.	./.	./.	./.	./.	0/1:29,29:31:58:0.500:2	./.
chr17	42990697	rs2229012	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,56:31:140:0.400:2	./.	./.	./.	./.	./.
chr17	42992714	rs2229011	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,17:29:41:0.415:2
chr17	43003484	rs3169733	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,47:30:118:0.398:2	./.	./.	0/1:0,77:30:77:1.00:2	0/1:45,46:29:91:0.505:2	./.
chr17	43004436	rs61739617	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:28,22:31:50:0.440:2	0/1:16,8:32:24:0.333:2	./.	./.	./.	./.	./.	./.	./.	0/1:22,27:31:49:0.551:2	./.
chr17	43008970	rs17546822	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:36,24:30:60:0.400:2	0/1:28,13:30:41:0.317:2	./.	./.	./.	./.	./.	./.	./.	0/1:39,35:31:74:0.473:2	./.
chr17	43010086	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,27:31:62:0.435:2	./.	./.	./.
chr17	43011704	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,16:30:82:0.195:2	./.	./.	./.	./.
chr17	43011705	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,16:32:82:0.195:2	./.	./.	./.	./.
chr17	43011908	rs755547	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,70:30:165:0.424:2	./.	./.	0/1:0,115:31:115:1.00:2	0/1:48,41:32:89:0.461:2	./.
chr17	43111688	rs9900173	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:31:14:0.500:2	./.	./.	./.	0/1:10,113:31:123:0.919:2	./.	0/1:55,24:32:79:0.304:2	./.	0/1:33,31:31:64:0.484:2
chr17	43171154	rs1132898	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:29,24:31:53:0.453:2	0/1:10,14:32:24:0.583:2	./.	./.	0/1:32,30:31:62:0.484:2	./.	./.	./.	./.	0/1:29,30:31:59:0.508:2	./.
chr17	43175906	rs2239922	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,17:32:51:0.333:2
chr17	43176804	rs2239923	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,71:31:188:0.378:2	./.	0/1:88,89:32:177:0.503:2	./.	./.
chr17	43183028	rs1053733	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,22:32:58:0.379:2	./.	./.	0/1:39,17:32:56:0.304:2	./.	0/1:47,20:33:67:0.299:2	./.	0/1:20,22:32:42:0.524:2
chr17	43190846	rs734921	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,73:32:159:0.459:2
chr17	43192821	rs713101	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:33:10:1.00:2	0/1:0,54:32:54:1.00:2	0/1:52,38:33:90:0.422:2	0/1:19,38:32:57:0.667:2	0/1:56,42:31:98:0.429:2	0/1:31,45:32:76:0.592:2	0/1:38,34:33:72:0.472:2	./.	0/1:24,19:30:43:0.442:2
chr17	43216472	rs16939879	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,5:28:17:0.294:2
chr17	43226887	rs12051846	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,3:31:7:0.429:2	0/1:2,4:30:6:0.667:2	./.	./.	./.	./.	./.	./.	0/1:10,12:33:22:0.545:2	./.	./.
chr17	43227214	rs1044977	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:11,10:32:21:0.476:2	0/1:11,7:28:18:0.389:2	./.	./.	./.	./.	0/1:38,35:32:73:0.479:2	./.	0/1:20,21:30:41:0.512:2	./.	./.
chr17	43227566	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	43228491	rs901753	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,18:32:57:0.316:2
chr17	43229299	rs8070447	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,37:33:77:0.481:2	./.	./.	./.	./.	0/1:56,58:33:114:0.509:2	0/1:71,49:33:120:0.408:2	./.
chr17	43314960	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,4:34:122:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr17	43316360	rs12940312	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,82:33:188:0.436:2	./.	./.	./.
chr17	43318778	rs7218169	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,5:30:5:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,7:28:7:1.00:2	0/1:0,7:25:7:1.00:2	0/1:0,10:28:10:1.00:2	0/1:0,3:26:3:1.00:2	0/1:0,9:26:9:1.00:2	0/1:0,7:28:7:1.00:2	0/1:0,10:25:10:1.00:2	0/1:0,4:27:4:1.00:2
chr17	43318779	rs7219366	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,5:31:5:1.00:2	0/1:0,7:28:7:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,4:29:4:1.00:2
chr17	43318984	rs183400333	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	./.	./.	./.	./.	./.	./.
chr17	43319770	rs1801353	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,55:31:112:0.491:2	0/1:43,18:32:61:0.295:2	0/1:5,11:31:16:0.688:2	0/1:81,79:31:160:0.494:2	0/1:1,160:31:161:0.994:2	0/1:87,63:31:150:0.420:2	0/1:117,74:31:191:0.387:2	0/1:123,60:31:183:0.328:2	0/1:83,70:32:153:0.458:2	0/1:1,101:31:102:0.990:2	0/1:72,52:31:124:0.419:2
chr17	43332965	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:30:112:0.036:2	./.	./.	./.
chr17	43333125	rs11651968	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,27:32:62:0.435:2	0/1:24,27:31:51:0.529:2	0/1:6,7:32:13:0.538:2	0/1:47,37:31:84:0.440:2	0/1:0,106:31:106:1.00:2	./.	./.	0/1:51,37:31:88:0.420:2	0/1:39,51:32:90:0.567:2	0/1:0,70:32:70:1.00:2	0/1:31,34:32:66:0.523:2
chr17	43334499	rs117103308	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,12:32:28:0.429:2	./.	./.	./.	./.	./.
chr17	43342141	rs1047833	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,33:31:79:0.418:2	0/1:21,26:32:47:0.553:2	0/1:0,17:32:17:1.00:2	0/1:0,106:33:106:1.00:2	0/1:0,149:31:150:1.00:2	0/1:65,45:31:110:0.409:2	0/1:1,111:32:112:0.991:2	0/1:0,137:32:137:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,74:33:74:1.00:2
chr17	43364638	rs11574819	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,57:31:133:0.429:2	0/1:38,44:32:82:0.537:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	43472825	rs11546338	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,37:31:37:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr17	43473920	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	43522910	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,5:33:50:0.100:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	43530912	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:33:116:0.034:2
chr17	43531297	rs2684501	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,4:30:17:0.235:2	./.	./.	0/1:35,10:30:45:0.222:2	./.	./.	./.	./.	./.	./.
chr17	43555267	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,14:31:114:0.123:2	./.	./.	./.	./.	./.	./.	./.
chr17	43555372	rs2868645	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:166,4:32:170:0.024:2	./.	./.	./.	./.	./.	./.
chr17	43923180	rs242944	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,21:30:35:0.600:2	0/1:6,12:30:18:0.667:2	./.	0/1:18,19:29:37:0.514:2	0/1:13,11:30:24:0.458:2	./.	0/1:9,8:31:18:0.471:2	./.	0/1:15,16:31:31:0.516:2	0/1:0,28:30:28:1.00:2	0/1:4,10:28:14:0.714:2
chr17	43923884	rs192499150	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,11:32:40:0.275:2	./.	./.	./.
chr17	43923894	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:30:5:1.00:2	./.	./.	./.	./.
chr17	43923898	rs171443	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,9:30:29:0.310:2	./.	./.	0/1:20,9:30:29:0.310:2	0/1:0,3:28:3:1.00:2	./.	0/1:0,5:27:5:1.00:2	0/1:26,9:29:35:0.257:2	0/1:21,10:27:31:0.323:2	0/1:0,14:29:14:1.00:2	0/1:0,6:30:6:1.00:2
chr17	44060834	rs150983093	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,7:33:15:0.467:2	./.	./.	./.	./.	./.	./.	./.
chr17	44060841	rs141120474	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,6:28:8:0.750:2
chr17	44060859	rs63750072	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:11,6:26:17:0.353:2	0/1:4,4:28:8:0.500:2	./.	0/1:12,7:30:19:0.368:2	./.	./.	./.	./.	./.	./.	./.
chr17	44061025	rs63750222	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,18:31:18:1.00:2	./.	0/1:48,22:32:70:0.314:2	0/1:24,27:32:51:0.529:2	./.	./.
chr17	44061123	rs73314997	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,29:32:51:0.569:2	./.	./.	./.
chr17	44067382	rs2258689	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	0/1:2,23:32:25:0.920:2	./.	0/1:20,22:32:42:0.524:2	0/1:30,30:33:60:0.500:2	./.	0/1:2,20:31:22:0.909:2
chr17	44074018	rs11568305	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:34,39:32:73:0.534:2	0/1:26,30:32:56:0.536:2	./.	0/1:56,45:32:101:0.446:2	./.	./.	./.	./.	./.	./.	./.
chr17	44109474	rs7220988	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:12,5:31:17:0.294:2	0/1:5,6:32:11:0.545:2	./.	0/1:16,14:32:30:0.467:2	./.	0/1:17,20:30:37:0.541:2	./.	0/1:31,29:32:60:0.483:2	0/1:0,20:32:20:1.00:2	0/1:0,20:32:20:1.00:2	0/1:19,16:30:35:0.457:2
chr17	44116049	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,33:31:65:0.508:2	0/1:21,12:32:33:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	44117135	rs2277613	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,53:32:56:0.946:2	./.	./.	./.	./.
chr17	44248499	rs2240758	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,11:30:31:0.355:2	./.	0/1:18,9:30:27:0.333:2	./.	./.	./.	./.
chr17	44248848	rs17662853	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,44:31:46:0.957:2	./.	./.	./.	./.	./.	./.
chr17	44249407	rs369793673	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,7:33:27:0.259:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	44372956	rs200913894	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,5:31:68:0.074:2	0/1:73,19:30:92:0.207:2	./.	./.	0/1:58,12:31:70:0.171:2	0/1:53,11:30:64:0.172:2	0/1:59,10:32:69:0.145:2
chr17	44373343	.	G	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:75,11:33:86:0.128:2	0/1:44,12:32:56:0.214:2	0/1:7,4:32:11:0.364:2	0/1:81,22:32:103:0.214:2	0/1:105,10:31:115:0.087:2	./.	0/1:146,12:31:158:0.076:2	0/1:89,19:29:108:0.176:2	0/1:81,5:33:86:0.058:2	0/1:98,19:32:117:0.162:2	./.
chr17	44373392	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,6:31:165:0.036:2	./.	./.	./.	./.
chr17	44373433	.	C	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:33,23:31:56:0.411:2	0/1:15,13:32:28:0.464:2	./.	0/1:28,26:33:54:0.481:2	./.	./.	./.	0/1:49,18:32:67:0.269:2	0/1:35,13:31:48:0.271:2	0/1:34,50:33:84:0.595:2	0/1:69,27:33:96:0.281:2
chr17	44373462	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:22,23:32:45:0.511:2	0/1:16,12:31:28:0.429:2	./.	0/1:16,31:32:47:0.660:2	./.	./.	./.	0/1:37,10:32:47:0.213:2	0/1:24,10:33:34:0.294:2	0/1:15,31:33:46:0.674:2	0/1:58,24:32:82:0.293:2
chr17	44373716	rs200361205	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:109,10:28:119:0.084:2	0/1:63,6:33:69:0.087:2	./.	0/1:87,11:30:98:0.112:2	./.	./.	./.	0/1:141,7:31:150:0.047:2	0/1:146,8:32:154:0.052:2	0/1:71,12:32:83:0.145:2	0/1:187,6:28:193:0.031:2
chr17	44373804	.	C	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:85,26:33:111:0.234:2	0/1:37,21:32:58:0.362:2	0/1:10,5:31:15:0.333:2	0/1:63,44:33:109:0.411:2	./.	./.	./.	0/1:64,41:32:105:0.390:2	0/1:73,28:34:101:0.277:2	0/1:51,45:33:96:0.469:2	0/1:135,30:33:165:0.182:2
chr17	44373844	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,20:31:90:0.222:2	0/1:31,12:31:43:0.279:2	0/1:5,5:29:10:0.500:2	0/1:39,35:30:74:0.473:2	./.	./.	./.	0/1:40,23:30:63:0.365:2	0/1:41,24:31:65:0.369:2	0/1:31,30:31:61:0.492:2	0/1:88,29:30:117:0.248:2
chr17	44373886	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:35,13:32:48:0.271:2	0/1:22,6:32:28:0.214:2	./.	0/1:16,16:31:32:0.500:2	./.	./.	./.	0/1:20,9:31:29:0.310:2	0/1:22,14:32:36:0.389:2	0/1:20,12:31:32:0.375:2	0/1:39,21:31:60:0.350:2
chr17	44373894	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,7:34:75:0.093:2	./.	./.	./.	./.
chr17	44374591	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,8:31:63:0.127:2	./.	./.	./.	./.	./.	./.
chr17	44374710	rs201223330	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,82:28:93:0.882:2	0/1:11,29:28:40:0.725:2	0/1:1,5:28:6:0.833:2	0/1:4,79:29:83:0.952:2	./.	./.	./.	0/1:8,70:28:78:0.897:2	0/1:14,49:29:63:0.778:2	0/1:4,124:29:128:0.969:2	0/1:119,63:27:182:0.346:2
chr17	44374826	rs201489608	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:118,10:32:128:0.078:2	0/1:98,5:31:103:0.049:2	0/1:76,19:31:95:0.200:2	./.	0/1:101,4:31:105:0.038:2	./.	./.
chr17	44374853	rs199531940	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,9:32:85:0.106:2	0/1:73,6:33:79:0.076:2	0/1:71,5:32:76:0.066:2	./.	0/1:71,4:33:75:0.053:2	./.	./.
chr17	44380090	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,4:32:70:0.057:2	./.	./.	./.	./.	./.	./.	./.
chr17	44382864	rs199822768	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,35:32:81:0.432:2	0/1:18,15:31:33:0.455:2	0/1:1,2:33:3:0.667:2	0/1:31,12:31:43:0.279:2	0/1:87,5:27:92:0.054:2	./.	./.	./.	0/1:126,16:33:142:0.113:2	0/1:28,27:32:55:0.491:2	0/1:93,17:32:110:0.155:2
chr17	44407998	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.
chr17	44408066	.	C	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:68,61:31:129:0.473:2	0/1:55,32:31:87:0.368:2	0/1:0,4:31:4:1.00:2	0/1:2,105:31:107:0.981:2	./.	./.	0/1:147,10:31:157:0.064:2	0/1:2,53:31:55:0.964:2	0/1:122,25:32:147:0.170:2	0/1:3,91:31:94:0.968:2	0/1:4,51:30:55:0.927:2
chr17	44408406	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,17:29:18:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,11:28:11:1.00:2	./.	0/1:0,12:30:12:1.00:2	./.	./.
chr17	44409126	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:125,4:32:129:0.031:2	./.	./.	./.	./.	0/1:152,4:34:156:0.026:2	./.	./.
chr17	44409255	rs199654332	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:10,13:31:23:0.565:2	0/1:5,16:31:21:0.762:2	./.	0/1:1,10:32:11:0.909:2	./.	./.	./.	0/1:8,4:32:12:0.333:2	0/1:8,8:32:16:0.500:2	0/1:2,10:32:12:0.833:2	0/1:18,7:32:25:0.280:2
chr17	44409286	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:33:9:0.333:2	./.
chr17	44412913	rs200489911	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,3:32:40:0.075:2	./.
chr17	44590922	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:65,11:30:76:0.145:2	0/1:44,4:32:48:0.083:2	./.	0/1:54,17:32:71:0.239:2	0/1:153,9:31:162:0.056:2	./.	0/1:134,11:32:145:0.076:2	0/1:102,6:32:108:0.056:2	0/1:89,8:32:97:0.082:2	0/1:64,9:32:73:0.123:2	./.
chr17	44591012	.	C	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,19:30:45:0.422:2	0/1:22,12:30:34:0.353:2	0/1:6,8:32:14:0.571:2	0/1:34,18:32:52:0.346:2	./.	./.	./.	0/1:39,23:29:62:0.371:2	0/1:38,16:32:54:0.296:2	0/1:31,40:31:71:0.563:2	0/1:61,16:30:77:0.208:2
chr17	44591041	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,13:30:34:0.394:2	0/1:20,11:32:31:0.355:2	0/1:3,3:31:6:0.500:2	0/1:24,26:32:50:0.520:2	./.	./.	./.	0/1:18,25:31:43:0.581:2	0/1:23,17:33:40:0.425:2	0/1:18,27:31:45:0.600:2	0/1:60,17:32:77:0.221:2
chr17	44591295	.	C	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:105,8:29:113:0.071:2	0/1:55,6:32:61:0.098:2	./.	0/1:119,11:31:130:0.085:2	./.	./.	./.	0/1:138,8:28:148:0.055:2	0/1:125,9:29:134:0.067:2	0/1:86,13:32:99:0.131:2	0/1:189,8:32:197:0.041:2
chr17	44591383	.	C	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,29:33:102:0.284:2	0/1:36,22:32:58:0.379:2	0/1:7,5:32:12:0.417:2	0/1:65,44:33:109:0.404:2	./.	./.	./.	0/1:72,34:33:106:0.321:2	0/1:77,37:32:114:0.325:2	0/1:60,55:33:115:0.478:2	0/1:142,28:33:170:0.165:2
chr17	44591423	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,19:31:67:0.284:2	0/1:28,22:31:50:0.440:2	0/1:5,3:29:8:0.375:2	0/1:37,33:31:70:0.471:2	./.	./.	./.	0/1:50,20:28:71:0.286:2	0/1:58,25:31:83:0.301:2	0/1:36,33:31:69:0.478:2	0/1:121,15:30:136:0.110:2
chr17	44591465	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:31,10:31:41:0.244:2	0/1:12,14:32:26:0.538:2	./.	0/1:25,21:31:46:0.457:2	./.	./.	./.	0/1:30,6:31:37:0.167:2	0/1:26,10:34:36:0.278:2	0/1:17,14:32:31:0.452:2	0/1:56,7:32:63:0.111:2
chr17	44591473	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:32:75:0.053:2	./.	./.	./.	./.
chr17	44591691	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:32:49:0.082:2
chr17	44591705	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:31:45:0.089:2
chr17	44592170	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,4:31:48:0.083:2	./.	./.	./.	./.	./.	./.
chr17	44592289	rs201430768	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:103,18:29:121:0.149:2	0/1:59,16:28:75:0.213:2	0/1:1,3:25:4:0.750:2	0/1:6,22:29:28:0.786:2	./.	./.	./.	0/1:10,19:28:29:0.655:2	0/1:97,8:30:105:0.076:2	0/1:5,36:29:41:0.878:2	0/1:48,24:30:72:0.333:2
chr17	44592405	rs199621736	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:32:132:0.030:2	./.	./.	./.	./.	./.
chr17	44592432	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:31:97:0.041:2	./.	./.	./.	./.	./.
chr17	44597664	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:32:75:0.053:2	0/1:125,5:33:130:0.038:2	./.	./.
chr17	44625928	rs151267673	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,49:31:105:0.467:2	0/1:45,35:32:80:0.438:2	0/1:0,9:30:9:1.00:2	0/1:2,78:31:80:0.975:2	./.	./.	0/1:154,12:31:166:0.072:2	0/1:3,50:31:53:0.943:2	0/1:102,32:32:134:0.239:2	0/1:5,91:31:96:0.948:2	0/1:2,50:31:52:0.962:2
chr17	44626660	rs1969205	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:32:8:1.00:2	0/1:1,10:33:11:0.909:2	./.	./.	0/1:3,14:31:17:0.824:2	0/1:4,7:32:11:0.636:2	0/1:3,26:32:29:0.897:2	./.	0/1:0,8:31:8:1.00:2	./.	./.
chr17	44626673	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:33:11:0.364:2
chr17	44626817	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:32:38:0.105:2
chr17	44626822	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:34:43:0.093:2
chr17	44626988	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:133,4:32:137:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr17	44627117	rs202124484	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:3,9:33:12:0.750:2	0/1:3,4:31:7:0.571:2	./.	0/1:1,10:32:11:0.909:2	./.	./.	./.	0/1:12,4:32:16:0.250:2	0/1:19,8:32:27:0.296:2	0/1:0,18:32:18:1.00:2	0/1:10,6:32:16:0.375:2
chr17	44627148	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,3:32:12:0.250:2	./.	./.	./.
chr17	44627785	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,4:29:37:0.108:2	./.	./.	./.
chr17	44632544	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:30:83:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	44634764	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,3:31:12:0.250:2
chr17	44634804	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,6:32:27:0.222:2
chr17	44634849	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,8:30:47:0.170:2
chr17	44828931	rs199533	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,46:32:126:0.365:2	0/1:97,62:32:159:0.390:2	0/1:67,48:32:115:0.417:2	./.	./.	./.	0/1:87,78:32:165:0.473:2
chr17	44833217	rs35732828	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,3:32:14:0.214:2	./.	./.	./.	./.	./.	./.
chr17	44950122	rs4968281	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:27:26:1.00:2	0/1:0,30:27:31:1.00:2	0/1:0,10:28:10:1.00:2	0/1:21,21:27:42:0.500:2	0/1:2,56:28:58:0.966:2	0/1:0,63:28:63:1.00:2	./.	0/1:62,37:29:99:0.374:2	0/1:23,28:29:51:0.549:2	0/1:35,15:27:50:0.300:2	0/1:10,20:27:30:0.667:2
chr17	45000529	rs189899	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,8:31:23:0.348:2	0/1:13,4:33:17:0.235:2	0/1:1,5:30:6:0.833:2	0/1:20,22:32:42:0.524:2	0/1:17,11:32:28:0.393:2	0/1:16,26:32:42:0.619:2	0/1:0,23:32:23:1.00:2	./.	0/1:9,19:32:28:0.679:2	0/1:9,18:30:27:0.667:2	./.
chr17	45000547	rs183199	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:31:32:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,8:32:8:1.00:2	0/1:2,47:29:49:0.959:2	0/1:0,35:29:35:1.00:2	0/1:0,57:29:57:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,56:29:56:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,36:28:36:1.00:2	0/1:0,16:28:16:1.00:2
chr17	45000565	rs12944167	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,31:27:68:0.463:2	./.	./.	./.	./.	./.
chr17	45008570	rs197922	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,12:31:13:0.923:2	./.	0/1:51,36:31:87:0.414:2	0/1:45,58:31:104:0.563:2	0/1:5,66:31:71:0.930:2	./.	0/1:52,29:32:81:0.358:2	0/1:44,54:32:98:0.551:2	./.
chr17	45198343	rs731790	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,49:32:85:0.576:2	./.	0/1:42,28:32:70:0.400:2	./.	./.	./.	./.
chr17	45206825	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,3:34:76:0.039:2	./.
chr17	45214558	rs77685276	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:19,4:32:23:0.174:2	./.	./.	0/1:27,3:33:30:0.100:2	./.	./.	./.	./.	./.	./.	./.
chr17	45214604	rs75661039	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,3:32:17:0.176:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	45214605	rs76926116	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,3:29:17:0.176:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	45214631	rs11570544	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,5:32:12:0.417:2	0/1:5,4:32:9:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	45214643	rs138020641	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,3:31:33:0.091:2	./.	./.	./.	./.	./.
chr17	45214685	rs11570543	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,3:30:10:0.300:2	./.	0/1:2,4:33:6:0.667:2	./.	./.	./.	./.
chr17	45214690	rs74390782	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,3:31:13:0.231:2	./.	./.	./.	./.	./.
chr17	45216160	rs199626169	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,3:31:16:0.188:2	./.	./.	./.	./.	./.
chr17	45216182	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,4:30:17:0.235:2	./.	./.	./.	./.	./.
chr17	45216198	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,4:30:16:0.250:2	./.	./.	./.	./.	./.
chr17	45219247	rs200940073	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,6:30:65:0.092:2	0/1:24,4:28:28:0.143:2	0/1:44,5:31:49:0.102:2	0/1:49,7:30:56:0.125:2	0/1:49,13:32:62:0.210:2	./.	0/1:50,4:29:54:0.074:2	0/1:96,8:27:104:0.077:2
chr17	45219299	rs113472284	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:32:55:0.073:2	./.	./.	./.	./.
chr17	45219310	rs75894512	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,6:31:34:0.176:2	0/1:42,4:32:46:0.087:2	./.	0/1:32,5:34:37:0.135:2	./.	0/1:21,4:30:25:0.160:2	./.
chr17	45219311	rs140737545	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,5:32:34:0.147:2	0/1:42,4:34:46:0.087:2	./.	./.	./.	0/1:18,7:33:25:0.280:2	0/1:61,6:34:67:0.090:2
chr17	45219332	rs62077261	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,9:31:31:0.290:2	0/1:21,5:33:26:0.192:2	0/1:25,5:28:30:0.167:2	./.	./.	0/1:11,4:30:15:0.267:2	./.
chr17	45219354	rs7220394	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,21:32:32:0.656:2
chr17	45219654	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:116,18:33:134:0.134:2	0/1:76,17:32:93:0.183:2	0/1:14,8:32:22:0.364:2	0/1:117,51:32:168:0.304:2	0/1:89,32:31:121:0.264:2	0/1:125,52:32:177:0.294:2	0/1:88,34:32:122:0.279:2	0/1:139,49:31:188:0.261:2	0/1:135,44:32:179:0.246:2	0/1:135,48:33:183:0.262:2	0/1:145,32:32:177:0.181:2
chr17	45219658	.	C	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:151,4:32:155:0.026:2	0/1:112,4:33:116:0.034:2	./.	0/1:179,5:33:184:0.027:2	0/1:126,5:32:131:0.038:2	0/1:178,6:31:184:0.033:2	./.	0/1:182,9:32:191:0.047:2	0/1:170,9:33:179:0.050:2	0/1:172,12:32:184:0.065:2	./.
chr17	45219665	.	G	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:173,9:32:182:0.049:2	0/1:120,5:30:127:0.040:2	./.	0/1:176,9:30:185:0.049:2	./.	0/1:173,11:29:184:0.060:2	0/1:134,5:32:139:0.036:2	0/1:168,25:30:193:0.130:2	0/1:166,14:32:180:0.078:2	0/1:177,12:32:189:0.063:2	0/1:178,6:31:184:0.033:2
chr17	45219669	rs11491191	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:114,71:32:186:0.384:2	0/1:69,61:31:130:0.469:2	0/1:13,20:31:33:0.606:2	0/1:93,93:31:186:0.500:2	0/1:77,69:31:146:0.473:2	0/1:103,81:31:184:0.440:2	0/1:65,76:31:141:0.539:2	0/1:104,84:31:188:0.447:2	0/1:100,81:32:181:0.448:2	0/1:99,87:32:186:0.468:2	0/1:123,59:32:182:0.324:2
chr17	45219672	.	G	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:171,14:28:185:0.076:2	0/1:130,12:31:142:0.085:2	0/1:24,9:30:33:0.273:2	0/1:175,14:30:189:0.074:2	0/1:149,8:29:157:0.051:2	0/1:171,14:30:185:0.076:2	0/1:126,19:30:145:0.131:2	0/1:186,8:30:194:0.041:2	0/1:169,12:32:181:0.066:2	0/1:177,11:32:188:0.059:2	./.
chr17	45219677	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,6:30:185:0.032:2	./.	./.	./.	./.	./.
chr17	45219695	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:33:181:0.022:2	./.	0/1:166,4:33:171:0.024:2
chr17	45219697	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:176,13:33:189:0.069:2	0/1:161,7:32:168:0.042:2	./.	0/1:170,13:31:183:0.071:2	./.	0/1:176,10:32:186:0.054:2	0/1:164,12:32:176:0.068:2	0/1:163,26:32:189:0.138:2	0/1:168,13:33:181:0.072:2	0/1:174,12:30:186:0.065:2	0/1:158,12:31:170:0.071:2
chr17	45219703	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:180,4:34:185:0.022:2	./.	0/1:34,3:33:37:0.081:2	./.	0/1:156,9:30:165:0.055:2	0/1:166,17:32:183:0.093:2	0/1:161,14:33:175:0.080:2	0/1:173,10:33:183:0.055:2	0/1:169,8:34:177:0.045:2	0/1:167,20:33:187:0.107:2	0/1:159,7:33:166:0.042:2
chr17	45219730	.	T	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:137,12:32:149:0.081:2	0/1:124,14:33:138:0.101:2	0/1:20,10:32:30:0.333:2	0/1:118,15:33:133:0.113:2	0/1:125,7:32:132:0.053:2	0/1:115,10:32:125:0.080:2	0/1:112,14:32:126:0.111:2	0/1:111,11:32:122:0.090:2	0/1:107,12:33:119:0.101:2	0/1:106,13:33:119:0.109:2	0/1:112,8:33:120:0.067:2
chr17	45219741	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,7:32:111:0.063:2
chr17	45219752	.	T	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:86,10:30:96:0.104:2	./.	0/1:61,5:32:66:0.076:2	0/1:68,9:30:77:0.117:2	0/1:64,9:31:73:0.123:2	./.	0/1:60,8:32:68:0.118:2	0/1:56,6:33:62:0.097:2	0/1:65,14:32:79:0.177:2	0/1:94,7:32:101:0.069:2
chr17	45219760	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:55,4:32:59:0.068:2	./.	./.	0/1:45,3:33:48:0.063:2	./.	./.	0/1:50,6:32:56:0.107:2	./.	./.	./.	0/1:78,5:33:83:0.060:2
chr17	45219767	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:45,6:32:51:0.118:2	./.	./.	./.	./.	0/1:40,3:33:43:0.070:2	./.	./.	./.	./.
chr17	45219780	.	A	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,3:31:29:0.103:2	0/1:16,3:33:19:0.158:2	./.	0/1:16,6:31:22:0.273:2	0/1:19,3:31:22:0.136:2	./.	0/1:15,4:33:19:0.211:2	./.	0/1:13,6:33:19:0.316:2	0/1:30,5:32:35:0.143:2	0/1:32,9:30:41:0.220:2
chr17	45229185	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,3:33:32:0.094:2	./.	./.	./.	./.
chr17	45229257	rs199890121	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,6:32:53:0.113:2	./.	./.	./.	./.	./.
chr17	45232126	rs138789655	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:32:12:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	45234303	rs200611688	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,4:32:50:0.080:2	0/1:23,4:30:27:0.148:2	./.	0/1:32,6:33:38:0.158:2	0/1:16,11:29:27:0.407:2	0/1:26,5:31:31:0.161:2	0/1:23,4:31:27:0.148:2	0/1:54,6:32:60:0.100:2	0/1:48,5:32:53:0.094:2	./.	0/1:75,4:32:79:0.051:2
chr17	45234350	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,3:31:40:0.075:2	./.	0/1:27,3:32:30:0.100:2	./.	./.	./.	./.	./.
chr17	45234367	rs200148949	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,3:32:32:0.094:2	./.	./.	./.	./.	./.
chr17	45234417	rs193061947	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,6:32:14:0.429:2	0/1:4,12:31:16:0.750:2	./.	0/1:13,6:32:19:0.316:2	0/1:7,11:31:18:0.611:2	0/1:13,10:32:23:0.435:2	0/1:9,7:33:16:0.438:2	0/1:9,11:31:20:0.550:2	0/1:16,6:34:22:0.273:2	0/1:8,4:33:12:0.333:2	0/1:9,16:32:25:0.640:2
chr17	45234420	rs78493795	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,8:33:13:0.615:2	0/1:2,13:32:15:0.867:2	./.	0/1:8,8:33:16:0.500:2	0/1:6,12:31:18:0.667:2	0/1:5,16:32:21:0.762:2	0/1:9,7:34:16:0.438:2	0/1:9,11:32:20:0.550:2	0/1:13,8:34:21:0.381:2	0/1:6,6:30:12:0.500:2	0/1:7,17:32:24:0.708:2
chr17	45234432	rs201187810	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,3:29:18:0.167:2	./.	./.	./.
chr17	45234449	rs112216339	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	./.	0/1:7,8:32:15:0.533:2	0/1:5,6:30:11:0.545:2	./.	0/1:11,3:33:14:0.214:2	./.	./.	0/1:7,3:29:10:0.300:2
chr17	45234625	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:124,5:29:129:0.039:2	./.	./.	./.	0/1:89,6:27:95:0.063:2	0/1:130,6:27:136:0.044:2	./.	0/1:174,7:25:181:0.039:2	./.	0/1:121,7:26:128:0.055:2	./.
chr17	45234626	rs76359747	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:124,5:32:129:0.039:2	./.	./.	./.	0/1:90,6:29:96:0.063:2	0/1:133,6:31:141:0.043:2	./.	0/1:176,7:30:183:0.038:2	0/1:130,4:32:134:0.030:2	0/1:126,7:28:133:0.053:2	./.
chr17	45234645	rs75990396	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:141,9:30:150:0.060:2	0/1:77,8:30:85:0.094:2	./.	0/1:163,5:32:168:0.030:2	0/1:106,13:31:119:0.109:2	0/1:146,15:32:161:0.093:2	0/1:152,9:30:161:0.056:2	0/1:155,20:31:175:0.114:2	0/1:157,11:32:168:0.065:2	0/1:146,15:31:161:0.093:2	./.
chr17	45234657	rs78108688	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:163,13:35:176:0.074:2	0/1:95,18:33:113:0.159:2	0/1:25,3:35:28:0.107:2	0/1:162,17:34:179:0.095:2	0/1:143,19:32:162:0.117:2	0/1:156,10:36:166:0.060:2	0/1:151,16:35:167:0.096:2	0/1:152,31:35:183:0.169:2	0/1:169,5:35:174:0.029:2	0/1:162,11:36:173:0.064:2	0/1:165,11:34:176:0.063:2
chr17	45234707	rs75353677	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:116,13:32:129:0.101:2	0/1:96,24:31:120:0.200:2	0/1:20,3:31:23:0.130:2	0/1:79,30:31:109:0.275:2	0/1:124,24:31:148:0.162:2	0/1:88,17:31:105:0.162:2	0/1:94,24:31:119:0.203:2	0/1:101,34:31:135:0.252:2	0/1:129,16:32:145:0.110:2	0/1:125,17:32:142:0.120:2	0/1:112,17:31:130:0.132:2
chr17	45234710	rs78395997	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:121,9:28:130:0.069:2	0/1:100,20:27:120:0.167:2	./.	0/1:85,25:28:110:0.227:2	0/1:122,22:27:144:0.153:2	0/1:89,12:28:101:0.119:2	0/1:100,15:28:115:0.130:2	0/1:111,22:27:133:0.165:2	0/1:126,10:29:136:0.074:2	0/1:124,12:28:136:0.088:2	0/1:112,15:27:127:0.118:2
chr17	45234713	rs139751753	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,7:29:133:0.053:2	./.	0/1:123,5:27:128:0.039:2	./.
chr17	45234725	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:99,5:26:104:0.048:2	0/1:94,12:28:106:0.113:2	./.	./.	0/1:100,20:28:120:0.167:2	0/1:83,5:30:89:0.057:2	0/1:90,9:28:99:0.091:2	0/1:108,18:26:126:0.143:2	0/1:110,7:27:117:0.060:2	0/1:95,10:29:105:0.095:2	0/1:113,10:28:123:0.081:2
chr17	45235591	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:29:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	45235598	rs77467652	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,3:30:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	45247305	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:32:104:0.038:2	./.	./.	./.
chr17	45247309	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:31:102:0.039:2	./.	./.	./.
chr17	45247311	rs201303434	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:32:103:0.039:2	./.	./.	./.
chr17	45247328	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,3:33:43:0.070:2	./.	0/1:74,4:32:78:0.051:2	./.	./.	./.	./.
chr17	45247354	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,6:32:83:0.072:2	./.	./.	./.
chr17	45247362	rs73319503	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,4:31:64:0.063:2	./.	./.	./.	0/1:68,10:31:78:0.128:2	./.	./.	./.
chr17	45247368	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,4:33:59:0.068:2	./.	./.	./.	./.	./.	./.	./.
chr17	45247381	rs75239352	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,4:30:44:0.091:2	./.	./.	./.	0/1:47,10:29:57:0.175:2	./.	./.	./.
chr17	45247401	rs199782161	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,6:32:44:0.136:2	./.	./.	./.
chr17	45249306	rs62077265	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,4:30:19:0.211:2	./.	./.	./.	./.
chr17	45249316	rs62077266	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,4:32:24:0.167:2	./.	./.	./.	./.
chr17	45249330	rs1058201	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,4:32:33:0.121:2	./.	./.	./.	./.
chr17	45249335	rs76782714	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,3:30:25:0.120:2	0/1:30,3:31:33:0.091:2	./.	./.	./.	./.	./.	./.
chr17	45249372	rs62077269	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,3:33:36:0.083:2	./.	./.	./.	./.	./.	./.
chr17	45258951	rs62077275	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:30:90:0.044:2	./.	./.	./.	./.
chr17	45258954	rs62077276	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:30:88:0.045:2	./.	./.	./.	./.
chr17	45360730	rs5918	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,14:30:40:0.350:2	./.	./.	./.	./.	./.	./.	./.
chr17	45360833	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:32:75:0.053:2	./.	./.	./.	./.
chr17	45364459	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:74,4:30:78:0.051:2	./.	./.	./.	./.	./.	./.
chr17	45364540	rs5919	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,46:32:84:0.548:2	0/1:46,39:33:85:0.459:2
chr17	45368337	rs15908	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,44:30:87:0.506:2	./.	./.	./.	0/1:71,54:30:125:0.432:2	0/1:99,4:32:103:0.039:2	0/1:42,32:30:74:0.432:2	0/1:0,61:30:61:1.00:2
chr17	45369777	rs4642	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,38:31:84:0.452:2	./.	./.	./.	0/1:79,47:30:126:0.373:2	./.	./.	0/1:36,31:31:67:0.463:2
chr17	45369789	rs4634	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,28:31:69:0.406:2	./.	./.	./.	0/1:64,42:31:106:0.396:2	./.	./.	0/1:31,22:32:53:0.415:2
chr17	45412629	rs34134208	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,19:32:45:0.422:2
chr17	45425287	rs71377306	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,11:32:22:0.500:2	./.	./.	./.	0/1:16,51:32:67:0.761:2
chr17	45447802	rs76299620	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:27,21:33:48:0.438:2	0/1:13,16:33:29:0.552:2	./.	0/1:47,25:33:72:0.347:2	./.	./.	./.	./.	./.	0/1:16,33:33:49:0.673:2	./.
chr17	45447832	rs55853213	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,60:32:113:0.531:2
chr17	45451894	rs4968318	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,64:32:65:0.985:2	0/1:0,20:32:20:1.00:2	0/1:0,6:30:6:1.00:2	0/1:30,26:30:56:0.464:2	0/1:21,19:31:40:0.475:2	0/1:40,28:29:68:0.412:2	0/1:15,11:30:26:0.423:2	./.	0/1:0,51:31:51:1.00:2	0/1:0,29:30:29:1.00:2	0/1:59,23:30:82:0.280:2
chr17	45468842	rs72825679	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,82:32:184:0.448:2
chr17	45471394	rs142664574	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,13:33:43:0.302:2	./.	./.	./.	./.
chr17	45490251	rs3883318	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:80,46:31:126:0.365:2	0/1:31,41:31:72:0.569:2	./.	0/1:68,70:30:138:0.507:2	./.	./.	./.	./.	./.	0/1:71,55:31:126:0.437:2	0/1:104,71:32:175:0.406:2
chr17	45492227	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:33:83:0.048:2	./.	./.
chr17	45608828	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,5:30:92:0.054:2	./.	./.	./.	./.	./.
chr17	45608854	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:32:162:0.025:2	./.	./.	./.
chr17	45646827	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,17:32:198:0.086:2	./.	./.	./.
chr17	45656760	rs202147565	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:160,29:33:189:0.153:2	0/1:166,23:32:189:0.122:2	./.	./.	./.	0/1:176,22:32:198:0.111:2	./.	./.	./.	./.	./.
chr17	45656773	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,12:34:194:0.062:2	./.	./.	./.
chr17	45660162	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,33:32:137:0.241:2	./.	./.	./.	0/1:92,34:33:127:0.270:2	0/1:117,11:33:128:0.086:2	./.	./.
chr17	45663605	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,6:29:105:0.057:2	./.	./.	./.	./.	./.	./.	./.
chr17	45663749	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:32:125:0.032:2	./.	./.	./.
chr17	45664677	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:185,6:31:191:0.031:2	./.	./.	0/1:191,4:32:195:0.021:2	./.	./.	./.
chr17	45668087	rs376523771	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:175,4:31:179:0.022:2	0/1:90,5:31:95:0.053:2	./.	0/1:190,8:31:198:0.040:2	0/1:133,7:29:140:0.050:2	0/1:191,6:27:197:0.030:2	0/1:149,5:30:154:0.032:2	./.	./.	0/1:147,9:29:156:0.058:2	0/1:191,7:29:199:0.035:2
chr17	45668137	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,17:32:194:0.088:2	./.	./.	./.	./.	0/1:183,13:32:196:0.066:2
chr17	45669359	rs200616431	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:163,26:33:189:0.138:2	0/1:127,17:32:144:0.118:2	0/1:86,17:32:103:0.165:2	0/1:166,31:32:197:0.157:2	./.	./.	./.	0/1:168,27:32:195:0.138:2	0/1:161,32:33:193:0.166:2	0/1:135,55:32:190:0.289:2	0/1:142,49:33:191:0.257:2
chr17	45677060	rs199810184	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,66:33:176:0.375:2
chr17	45678992	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,3:31:27:0.111:2	./.	./.	./.	./.	./.	./.	./.
chr17	45759767	rs7223246	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,11:29:17:0.647:2	./.	./.	./.	./.	./.	0/1:65,54:31:119:0.454:2	./.	./.
chr17	45811210	rs2074190	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:28,21:31:49:0.429:2	0/1:11,8:30:19:0.421:2	./.	0/1:1,52:31:53:0.981:2	./.	./.	0/1:42,42:31:84:0.500:2	0/1:39,21:31:60:0.350:2	./.	0/1:18,16:29:34:0.471:2	./.
chr17	45820022	rs200909431	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:111,18:20:129:0.140:2	./.	0/1:22,8:15:30:0.267:2	0/1:96,30:15:126:0.238:2	0/1:139,24:12:163:0.147:2	0/1:105,33:14:139:0.239:2	0/1:112,30:12:142:0.211:2	0/1:104,23:12:127:0.181:2	0/1:146,21:11:168:0.126:2	0/1:110,30:14:142:0.214:2	0/1:80,27:15:107:0.252:2
chr17	45821631	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:150,4:31:154:0.026:2	./.	./.	./.	./.	./.	./.
chr17	45822579	rs12721470	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,41:31:43:0.953:2	./.	./.	./.	./.	./.	./.	./.
chr17	45885687	rs9907142	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,27:29:60:0.450:2	0/1:26,21:27:47:0.447:2	0/1:0,10:30:10:1.00:2	0/1:2,75:28:77:0.974:2	0/1:2,77:26:79:0.975:2	0/1:47,41:28:88:0.466:2	0/1:1,91:28:92:0.989:2	0/1:3,79:27:82:0.963:2	0/1:0,77:28:77:1.00:2	0/1:0,37:27:37:1.00:2	0/1:0,50:27:50:1.00:2
chr17	45885756	rs9911983	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,62:32:137:0.453:2	0/1:1,120:32:121:0.992:2	0/1:55,70:32:125:0.560:2	./.	0/1:2,151:32:153:0.987:2	0/1:72,71:33:143:0.497:2	0/1:33,46:33:79:0.582:2	0/1:50,54:33:104:0.519:2
chr17	45887951	rs2074189	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,23:30:42:0.548:2	0/1:21,16:31:37:0.432:2	./.	0/1:39,35:29:74:0.473:2	0/1:0,71:29:71:1.00:2	0/1:2,72:29:75:0.973:2	./.	0/1:2,75:29:77:0.974:2	0/1:48,52:31:100:0.520:2	0/1:21,27:31:48:0.563:2	./.
chr17	45890707	rs2301690	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,101:30:101:1.00:2	0/1:46,36:30:82:0.439:2	./.	0/1:1,96:30:97:0.990:2	0/1:37,27:30:64:0.422:2	0/1:33,30:30:63:0.476:2	./.
chr17	45897151	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,4:31:72:0.056:2	./.	./.	./.	./.	./.	./.
chr17	45904420	rs11538868	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,145:31:149:0.973:2	0/1:67,43:30:110:0.391:2	./.	0/1:3,148:31:151:0.980:2	0/1:58,40:32:98:0.408:2	0/1:48,45:31:93:0.484:2	./.
chr17	45912696	rs17701113	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,62:32:65:0.954:2	0/1:38,31:31:69:0.449:2	./.	0/1:3,99:32:102:0.971:2	0/1:48,35:32:83:0.422:2	0/1:32,23:32:55:0.418:2	./.
chr17	45914403	rs145648581	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,32:30:61:0.525:2
chr17	45915288	rs148174869	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,35:30:72:0.486:2	./.	./.	./.	./.	./.	./.	./.
chr17	45915788	rs7350974	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:30:29:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,31:31:31:1.00:2
chr17	45916911	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:34:165:0.024:2	./.	./.	./.	./.
chr17	45917703	rs11652952	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,58:31:115:0.504:2	./.	./.	./.	./.	./.	./.	./.
chr17	45924792	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:30:74:0.054:2	./.	./.	./.	./.
chr17	45994044	rs2228253	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:27,14:30:41:0.341:2	0/1:10,11:30:21:0.524:2	0/1:0,6:30:6:1.00:2	./.	./.	./.	0/1:50,39:30:90:0.438:2	./.	0/1:28,22:32:50:0.440:2	0/1:21,23:31:45:0.523:2	0/1:33,26:30:59:0.441:2
chr17	45994094	rs2228251	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:25,16:29:41:0.390:2	0/1:11,9:26:20:0.450:2	0/1:0,4:31:4:1.00:2	./.	./.	./.	0/1:37,29:30:66:0.439:2	./.	0/1:23,20:30:43:0.465:2	0/1:16,9:30:25:0.360:2	0/1:17,23:29:40:0.575:2
chr17	45994154	rs2229358	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:29,18:32:47:0.383:2	./.	./.	./.	./.	./.	0/1:21,14:31:35:0.400:2	./.	0/1:19,16:33:35:0.457:2	0/1:11,11:32:22:0.500:2	0/1:4,13:30:17:0.765:2
chr17	46000406	rs62067380	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,43:33:91:0.473:2	./.	./.	./.	./.	./.	./.	0/1:27,24:32:51:0.471:2
chr17	46002394	rs3190376	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,58:30:121:0.479:2	./.	./.	./.	./.
chr17	46002744	rs1130932	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:26,12:31:38:0.316:2	0/1:10,6:31:16:0.375:2	0/1:0,3:30:3:1.00:2	./.	./.	./.	0/1:45,44:31:89:0.494:2	./.	0/1:26,36:31:62:0.581:2	0/1:29,20:30:49:0.408:2	0/1:25,19:31:44:0.432:2
chr17	46020698	rs11079804	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:74,64:33:138:0.464:2	0/1:36,36:32:72:0.500:2	./.	./.	0/1:123,76:32:199:0.382:2	0/1:1,133:32:135:0.993:2	./.	0/1:106,89:32:195:0.456:2	0/1:96,100:33:196:0.510:2	./.	./.
chr17	46030560	rs143611718	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,12:33:22:0.545:2	0/1:5,3:32:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	46053334	rs202125432	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:33,8:32:41:0.195:2	./.	./.	0/1:77,5:31:82:0.061:2	./.	0/1:74,8:33:82:0.098:2	0/1:114,4:32:118:0.034:2	0/1:101,8:31:109:0.073:2	./.	./.	./.
chr17	46056226	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.	./.	./.	./.
chr17	46056235	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,4:32:68:0.059:2	./.	./.	./.	./.	./.	./.	./.
chr17	46056255	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,4:33:68:0.059:2	./.	./.	./.	./.	./.	./.	./.
chr17	46058565	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:30:91:0.044:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	46114620	rs12940701	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,17:32:22:0.773:2	0/1:4,7:31:11:0.636:2	./.	0/1:12,15:32:27:0.556:2	0/1:15,28:31:43:0.651:2	0/1:0,24:31:24:1.00:2	./.	0/1:17,12:30:29:0.414:2	0/1:9,9:32:18:0.500:2	./.	0/1:5,13:30:18:0.722:2
chr17	46134798	rs2229368	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,55:33:151:0.364:2	./.	./.
chr17	46136952	rs143499120	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,20:32:38:0.526:2	./.	./.	./.	./.	./.	./.
chr17	46153461	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:32:97:0.041:2	./.	./.
chr17	46153470	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:32:100:0.040:2	./.	./.
chr17	46153498	rs150201479	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:34:91:0.044:2	./.	./.
chr17	46154312	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:33:146:0.027:2	./.	0/1:178,4:32:182:0.022:2	./.	./.	./.
chr17	46154362	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:34:112:0.036:2	./.	./.	./.
chr17	46262171	rs2278868	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:32:85:1.00:2	0/1:0,77:32:77:1.00:2	0/1:14,4:32:18:0.222:2	0/1:62,50:32:112:0.446:2	0/1:0,99:31:99:1.00:2	0/1:67,53:32:120:0.442:2	0/1:2,102:32:104:0.981:2	0/1:84,76:32:160:0.475:2	0/1:60,73:34:133:0.549:2	0/1:0,90:33:90:1.00:2	./.
chr17	46441132	rs77455117	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,17:32:58:0.293:2	./.	./.
chr17	46607021	rs7226137	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:30:55:1.00:2	0/1:0,36:31:36:1.00:2	0/1:1,8:33:9:0.889:2	0/1:0,80:32:80:1.00:2	0/1:0,53:32:53:1.00:2	0/1:1,96:31:97:0.990:2	0/1:0,67:31:67:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,44:32:44:1.00:2
chr17	46607817	rs7207109	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:54,37:31:91:0.407:2	0/1:32,26:32:58:0.448:2	./.	./.	0/1:54,52:30:106:0.491:2	0/1:43,56:31:99:0.566:2	0/1:54,53:31:107:0.495:2	0/1:56,56:31:112:0.500:2	0/1:45,44:31:89:0.494:2	./.	./.
chr17	46607958	rs12939811	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,6:31:14:0.429:2	0/1:5,3:32:8:0.375:2	./.	./.	0/1:6,13:32:19:0.684:2	0/1:10,6:32:16:0.375:2	./.	0/1:7,4:32:11:0.364:2	0/1:5,4:33:9:0.444:2	./.	./.
chr17	46608021	rs145345040	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,6:31:10:0.600:2	./.	./.	./.
chr17	46608030	rs12946855	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,7:32:17:0.412:2	0/1:3,4:32:7:0.571:2	./.	./.	0/1:3,6:32:9:0.667:2	0/1:4,10:31:14:0.714:2	0/1:1,5:31:6:0.833:2	0/1:4,6:27:10:0.600:2	./.	./.	./.
chr17	46629593	rs2229304	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,5:29:12:0.417:2	0/1:0,2:31:2:1.00:2	./.	0/1:6,3:31:9:0.333:2	0/1:4,3:27:7:0.429:2	0/1:4,9:30:13:0.692:2	./.	./.	0/1:2,8:28:10:0.800:2	0/1:0,4:31:4:1.00:2	0/1:0,2:31:2:1.00:2
chr17	46670520	rs7406798	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,22:33:22:1.00:2	0/1:0,15:32:15:1.00:2	./.	0/1:0,15:33:15:1.00:2	0/1:0,29:32:30:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,8:32:8:1.00:2
chr17	46670695	rs150923692	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,29:31:60:0.483:2	./.	./.	./.	./.	./.	./.	./.
chr17	46675240	rs34438598	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	./.	./.
chr17	46675426	rs33990581	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,64:30:140:0.457:2	./.	./.	./.	./.	./.	./.
chr17	46688256	rs7406910	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,26:33:26:1.00:2	0/1:0,9:33:9:1.00:2	./.	0/1:0,21:32:21:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,28:33:28:1.00:2	0/1:18,10:32:28:0.357:2	0/1:0,32:30:32:1.00:2	0/1:0,24:33:24:1.00:2	0/1:15,19:32:34:0.559:2	0/1:0,47:33:47:1.00:2
chr17	46690777	rs45441492	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,51:33:138:0.370:2	./.	./.	./.	./.
chr17	46700352	rs150997786	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,86:32:182:0.473:2
chr17	46709835	rs718079	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:28:26:1.00:2	0/1:0,16:27:16:1.00:2	0/1:0,4:31:4:1.00:2	0/1:1,46:29:47:0.979:2	0/1:31,20:30:51:0.392:2	0/1:23,11:29:34:0.324:2	0/1:22,6:33:28:0.214:2	0/1:29,14:29:43:0.326:2	0/1:29,28:30:57:0.491:2	0/1:0,38:29:38:1.00:2	0/1:26,10:29:36:0.278:2
chr17	46805443	rs9900627	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,27:33:61:0.443:2
chr17	46805590	rs8556	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,23:29:42:0.548:2	0/1:21,23:29:44:0.523:2	./.	./.	./.	./.	0/1:13,11:31:24:0.458:2	./.
chr17	46847196	rs78926010	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,9:22:142:0.063:2	0/1:125,10:17:136:0.074:2
chr17	46847364	rs2032844	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,87:31:194:0.448:2	./.	./.	./.	0/1:74,83:31:157:0.529:2	./.	0/1:57,73:31:130:0.562:2	./.
chr17	46868779	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:197:0.020:2	./.	./.	./.
chr17	46877063	rs61739953	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,20:32:65:0.308:2	./.	./.	./.
chr17	46878625	rs17634167	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:31:9:0.444:2	./.	./.	0/1:45,30:32:75:0.400:2	0/1:29,44:32:73:0.603:2	./.	./.	./.	0/1:39,31:31:70:0.443:2
chr17	46894377	rs3959442	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,10:29:15:0.667:2	./.	./.	./.	0/1:14,14:27:28:0.500:2	./.	0/1:4,10:28:14:0.714:2	./.
chr17	46926615	rs550510	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,35:31:104:0.337:2	./.	./.	./.	./.	0/1:49,22:31:72:0.310:2	0/1:32,21:30:53:0.396:2	./.
chr17	46929908	rs2303015	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,78:33:187:0.417:2	./.	./.	./.
chr17	46929982	rs17849804	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,56:32:94:0.596:2	./.	./.	./.	./.	./.	./.
chr17	46939658	rs10278	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:35,43:30:78:0.551:2	0/1:21,21:29:42:0.500:2	./.	0/1:28,37:30:65:0.569:2	./.	./.	./.	0/1:34,40:29:74:0.541:2	./.	0/1:20,16:30:36:0.444:2	./.
chr17	46970836	rs684682	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:30:51:1.00:2	0/1:0,24:28:24:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,71:29:71:1.00:2	0/1:0,61:29:61:1.00:2	0/1:0,51:29:51:1.00:2	0/1:0,68:29:68:1.00:2	0/1:0,67:29:67:1.00:2	0/1:0,46:29:46:1.00:2	0/1:1,38:29:39:0.974:2	0/1:0,57:28:57:1.00:2
chr17	46972643	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,19:11:148:0.128:2	0/1:138,23:12:161:0.143:2	./.	./.	./.	./.	./.
chr17	47000251	rs1058018	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,34:32:73:0.466:2	0/1:39,16:31:55:0.291:2	0/1:3,5:32:8:0.625:2	0/1:61,48:32:109:0.440:2	0/1:4,74:32:78:0.949:2	0/1:60,57:32:117:0.487:2	0/1:36,36:33:72:0.500:2	0/1:56,47:32:103:0.456:2	0/1:0,83:33:83:1.00:2	0/1:55,50:32:105:0.476:2	0/1:0,116:33:116:1.00:2
chr17	47007963	rs2270576	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:7,11:30:18:0.611:2	./.	./.	0/1:6,8:31:14:0.571:2	./.	./.	./.	0/1:19,7:31:26:0.269:2	./.	0/1:9,9:29:18:0.500:2	./.
chr17	47018371	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:127,4:32:131:0.031:2	./.	./.	./.	0/1:114,4:34:118:0.034:2	./.	./.
chr17	47018408	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,4:31:84:0.048:2	./.	./.	./.	./.	./.	./.
chr17	47036042	rs55936433	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:28,33:30:61:0.541:2	0/1:19,22:31:41:0.537:2	./.	0/1:55,35:29:90:0.389:2	./.	./.	./.	0/1:51,49:30:100:0.490:2	./.	0/1:36,26:31:62:0.419:2	./.
chr17	47036043	rs72833611	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:29:3:1.00:2	./.	./.	0/1:52,27:29:79:0.342:2	0/1:45,25:31:70:0.357:2	./.	./.	./.	./.
chr17	47039132	rs2291725	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:31:6:0.500:2	0/1:8,6:29:14:0.429:2	./.	./.	0/1:0,19:27:19:1.00:2	0/1:6,13:28:19:0.684:2	0/1:15,16:28:31:0.516:2	./.	0/1:0,18:28:18:1.00:2	0/1:19,3:31:22:0.136:2	0/1:0,23:28:23:1.00:2
chr17	47076463	rs117838533	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,15:33:29:0.517:2	./.
chr17	47076551	rs2411760	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:32:35:1.00:2	0/1:0,29:31:29:1.00:2	0/1:1,5:32:6:0.833:2	0/1:1,63:30:64:0.984:2	0/1:0,10:31:10:1.00:2	0/1:0,20:33:20:1.00:2	0/1:1,16:28:17:0.941:2	0/1:5,40:30:45:0.889:2	0/1:3,23:34:26:0.885:2	0/1:0,15:32:15:1.00:2	0/1:0,34:32:34:1.00:2
chr17	47118747	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:32:96:0.042:2	./.	./.	./.	./.
chr17	47210166	rs146443714	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,52:31:76:0.684:2	./.	./.
chr17	47210196	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:31:120:0.034:2	./.	./.	./.
chr17	47210429	rs7207842	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,6:33:12:0.500:2	0/1:4,4:32:8:0.500:2	0/1:0,4:34:4:1.00:2	0/1:12,12:32:24:0.500:2	0/1:0,17:31:17:1.00:2	0/1:0,31:32:31:1.00:2	0/1:15,13:33:28:0.464:2	0/1:0,24:32:24:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,19:32:19:1.00:2
chr17	47210469	rs117575112	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,5:31:6:0.833:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	47210506	rs7207403	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:30:9:0.333:2	0/1:7,11:29:18:0.611:2	0/1:0,13:26:13:1.00:2	./.	0/1:0,15:27:15:1.00:2	0/1:11,13:30:24:0.542:2	0/1:0,18:30:18:1.00:2	0/1:2,7:30:9:0.778:2
chr17	47241604	rs8074457	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:0,24:32:24:1.00:2	./.	0/1:0,33:33:33:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,32:31:32:1.00:2	0/1:29,23:30:52:0.442:2	0/1:0,35:33:35:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,46:31:47:1.00:2
chr17	47246163	rs7224888	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:47,46:29:93:0.495:2	0/1:25,17:30:42:0.405:2	./.	0/1:68,50:29:118:0.424:2	0/1:61,43:29:104:0.413:2	./.	./.	./.	0/1:1,99:29:100:0.990:2	./.	./.
chr17	47246979	rs16946912	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:11,11:32:22:0.500:2	0/1:7,8:30:15:0.533:2	0/1:3,3:33:6:0.500:2	./.	0/1:11,16:32:27:0.593:2	./.	./.	./.	0/1:0,23:34:23:1.00:2	./.	./.
chr17	47296961	rs2233371	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,43:28:86:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr17	47297297	rs616338	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,7:32:7:1.00:2	./.	./.	0/1:0,7:32:7:1.00:2	0/1:0,2:30:2:1.00:2	0/1:0,7:30:7:1.00:2	./.	0/1:0,6:32:6:1.00:2	0/1:0,4:34:4:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,2:31:2:1.00:2
chr17	47297537	rs76617033	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,49:31:78:0.628:2	./.	./.	./.	./.	./.	./.	./.
chr17	47394697	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:29:110:0.036:2	./.	./.	./.	./.	./.
chr17	47394756	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,6:28:172:0.035:2	./.	./.	./.	./.	./.
chr17	47394773	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:34:195:0.021:2	./.	./.	./.	./.	./.
chr17	47587819	rs2072446	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	0/1:43,27:30:70:0.386:2	./.	./.	./.	./.	./.	./.
chr17	47588000	rs11466155	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,139:31:143:0.986:2	./.	./.
chr17	47590134	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:31:45:0.089:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	47696724	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	47783663	rs1135034	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,32:31:81:0.395:2	./.	./.	./.	./.
chr17	47788755	rs34759387	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,12:31:32:0.375:2	0/1:15,13:31:28:0.464:2	./.	./.
chr17	47795035	rs35495960	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,46:32:84:0.548:2	./.
chr17	47810018	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:32:99:0.040:2	./.
chr17	47888852	rs4462645	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,126:32:126:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,145:32:145:1.00:2	0/1:0,92:31:92:1.00:2	0/1:0,135:32:136:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,161:32:162:1.00:2	0/1:0,173:33:173:1.00:2	0/1:0,129:33:129:1.00:2	0/1:0,178:32:179:1.00:2
chr17	47903381	rs61749929	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:50,29:31:79:0.367:2	0/1:27,16:32:43:0.372:2	./.	./.	./.	./.	./.	./.	./.	0/1:20,27:32:47:0.574:2	./.
chr17	47904161	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,4:35:115:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr17	48046963	rs61749026	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,9:30:34:0.265:2	./.	./.	./.	./.
chr17	48068947	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,28:30:41:0.683:2	./.	./.	./.	./.	./.	./.	./.
chr17	48070878	rs2303466	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,12:31:36:0.333:2	0/1:10,7:31:17:0.412:2	0/1:7,3:28:10:0.300:2	0/1:30,22:30:52:0.423:2	./.	./.	0/1:53,23:31:76:0.303:2	./.	0/1:26,25:32:51:0.490:2	./.	./.
chr17	48072225	rs33937843	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,61:32:119:0.513:2	./.	0/1:128,4:32:132:0.030:2	./.	./.	./.	./.
chr17	48072266	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:32:102:0.039:2	./.	./.	./.	./.
chr17	48145644	rs199534510	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,18:30:32:0.563:2	./.	./.	./.	./.	./.	./.	./.
chr17	48149386	rs2269772	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,70:31:121:0.579:2	0/1:47,34:33:81:0.420:2	0/1:0,81:32:81:1.00:2	./.
chr17	48151353	rs2285524	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,12:32:41:0.293:2	0/1:26,32:34:58:0.552:2	0/1:0,37:33:37:1.00:2	./.
chr17	48152998	rs370814972	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,32:31:52:0.615:2	0/1:20,24:31:44:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	48155425	rs2230392	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,31:31:85:0.365:2	0/1:38,35:31:73:0.479:2	0/1:0,51:32:51:1.00:2	./.
chr17	48166594	rs149061589	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,30:31:56:0.536:2	./.	./.
chr17	48172841	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:34:112:0.036:2	./.
chr17	48174908	rs9839	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,32:33:64:0.500:2	0/1:28,19:34:47:0.404:2	0/1:0,38:32:38:1.00:2	./.
chr17	48184448	rs149945889	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,51:32:93:0.548:2	./.	./.	./.	./.	./.	./.	./.
chr17	48192963	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:29:59:0.068:2	./.	./.	./.	./.
chr17	48216944	rs1569116	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,34:32:50:0.680:2	./.	./.	./.	./.	./.
chr17	48226811	rs74676292	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	0/1:0,2:33:2:1.00:2	./.
chr17	48243461	rs79410682	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:32:16:0.375:2	./.	0/1:57,94:32:151:0.623:2	./.	0/1:61,83:32:144:0.576:2	./.	./.	./.	./.
chr17	48246558	rs139454982	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,54:33:161:0.335:2	./.	./.	./.	./.
chr17	48247583	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:197:0.020:2	./.	./.	./.	./.
chr17	48247689	rs1801191	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,78:29:161:0.484:2	./.	0/1:95,72:29:167:0.431:2	./.	./.	./.	./.	./.
chr17	48264155	rs150751153	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,31:30:59:0.525:2
chr17	48265475	rs1800217	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,7:33:23:0.304:2	0/1:6,5:33:11:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	48265495	rs1800215	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:28:31:1.00:2	0/1:0,15:28:15:1.00:2	0/1:0,8:28:8:1.00:2	0/1:0,47:28:48:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,49:29:49:1.00:2	0/1:0,35:29:35:1.00:2	0/1:0,47:28:47:1.00:2	0/1:0,55:30:55:1.00:2	0/1:2,37:28:39:0.949:2	0/1:0,25:29:25:1.00:2
chr17	48267210	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,9:16:57:0.158:2	0/1:38,5:23:43:0.116:2	./.	./.
chr17	48267291	rs2075559	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,25:29:53:0.472:2	0/1:6,13:28:19:0.684:2	0/1:2,3:29:5:0.600:2	0/1:14,13:29:27:0.481:2	0/1:29,37:27:66:0.561:2	0/1:24,23:28:47:0.489:2	./.	0/1:34,27:28:61:0.443:2	0/1:0,51:28:51:1.00:2	./.	./.
chr17	48268223	rs2734272	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:30:71:1.00:2	0/1:0,61:29:61:1.00:2	0/1:0,20:28:20:1.00:2	0/1:0,123:29:123:1.00:2	0/1:0,169:29:169:1.00:2	0/1:0,114:30:114:1.00:2	0/1:0,158:29:158:1.00:2	0/1:0,176:30:176:1.00:2	0/1:0,114:30:114:1.00:2	0/1:0,82:30:82:1.00:2	0/1:0,101:29:101:1.00:2
chr17	48269903	rs2696247	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:0,42:32:42:1.00:2	0/1:0,24:33:24:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:21,22:31:43:0.512:2	./.
chr17	48272469	rs41317361	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,9:28:24:0.375:2	./.	./.	./.	./.	./.	./.	./.
chr17	48273737	rs141726413	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,21:33:38:0.553:2	0/1:12,17:32:29:0.586:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	48273903	rs17639446	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,7:32:16:0.438:2	./.	0/1:80,48:32:128:0.375:2	./.	./.	./.	./.	./.	./.
chr17	48274599	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,24:32:43:0.558:2
chr17	48275285	rs73987448	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:31,5:31:36:0.139:2	0/1:19,14:32:33:0.424:2	./.	./.	./.	./.	./.	./.	./.	0/1:14,12:32:26:0.462:2	./.
chr17	48275292	rs16948767	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:33,5:30:38:0.132:2	0/1:19,14:29:33:0.424:2	./.	0/1:32,31:30:63:0.492:2	./.	./.	./.	./.	./.	0/1:14,12:30:26:0.462:2	./.
chr17	48276971	rs2256835	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,12:32:12:1.00:2	./.	0/1:1,77:31:78:0.987:2	./.	0/1:41,20:32:61:0.328:2	0/1:43,42:32:85:0.494:2	0/1:42,36:31:78:0.462:2	./.	0/1:38,25:31:64:0.397:2
chr17	48277235	rs1057297	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:53,29:30:82:0.354:2	0/1:25,26:30:51:0.510:2	./.	./.	./.	./.	./.	./.	./.	0/1:53,62:30:115:0.539:2	./.
chr17	48351897	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,20:32:32:0.625:2	0/1:4,10:32:14:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	48355968	rs55649994	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,65:32:65:1.00:2	0/1:26,35:32:61:0.574:2	./.
chr17	48356260	rs6504642	G	C,A	.	PASS	AC=8,2;AF=0.267,0.067;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0/1:29:15:0.400:2	0/1:31:8:1.00:2	./.	0/1:32:28:0.964:2	0/2:30:15:0.200:2	0/1:30:27:0.333:2	0/1:29:21:1.00:2	0/2:31:34:0.412:2	0/1:31:24:1.00:2	0/1:32:18:1.00:2	0/1:31:21:0.524:2
chr17	48431032	rs739990	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:29,29:32:58:0.500:2	0/1:18,13:33:31:0.419:2	./.	./.	0/1:41,27:32:68:0.397:2	./.	./.	./.	./.	./.	./.
chr17	48431197	rs739989	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:35:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	48432324	rs12451299	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:37,30:30:67:0.448:2	0/1:24,17:29:41:0.415:2	./.	./.	0/1:64,34:29:98:0.347:2	./.	./.	./.	./.	./.	./.
chr17	48432352	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,4:33:98:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr17	48433958	rs4794136	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:29,26:28:55:0.473:2	0/1:14,8:29:22:0.364:2	0/1:5,5:31:10:0.500:2	./.	0/1:57,37:28:94:0.394:2	./.	0/1:1,99:29:100:0.990:2	0/1:40,29:28:69:0.420:2	0/1:44,42:27:86:0.488:2	./.	./.
chr17	48437456	rs6504649	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,45:32:106:0.425:2	0/1:28,25:32:53:0.472:2	0/1:3,11:31:14:0.786:2	0/1:69,53:33:122:0.434:2	0/1:50,53:31:103:0.515:2	0/1:66,71:31:137:0.518:2	./.	0/1:44,47:31:91:0.516:2	0/1:51,47:33:98:0.480:2	0/1:36,47:32:83:0.566:2	0/1:0,73:31:73:1.00:2
chr17	48450539	rs115623988	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,47:31:109:0.431:2	./.	./.	./.	./.	./.	./.	./.
chr17	48452776	rs3760413	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,121:33:122:0.992:2	0/1:0,75:32:75:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,144:32:144:1.00:2	0/1:3,124:32:127:0.976:2	0/1:70,98:32:168:0.583:2	0/1:0,136:32:136:1.00:2	0/1:1,185:33:186:0.995:2	0/1:0,151:33:151:1.00:2	0/1:0,133:33:133:1.00:2	0/1:0,154:32:154:1.00:2
chr17	48455985	rs2189712	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:54,49:33:103:0.476:2	0/1:32,32:33:64:0.500:2	./.	./.	0/1:61,76:32:137:0.555:2	./.	./.	./.	./.	./.	./.
chr17	48456193	rs12450550	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:62,36:32:98:0.367:2	0/1:23,25:31:48:0.521:2	./.	./.	0/1:50,40:30:90:0.444:2	./.	./.	./.	./.	./.	./.
chr17	48458184	rs61023979	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,48:30:93:0.516:2	./.	./.	./.	./.	./.	./.	./.
chr17	48460546	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,10:30:24:0.417:2	./.
chr17	48472270	rs3760407	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,66:31:70:0.957:2	0/1:0,54:31:54:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,83:31:83:1.00:2	0/1:0,91:31:91:1.00:2	0/1:45,41:30:86:0.477:2	0/1:1,71:30:72:0.986:2	0/1:1,99:31:100:0.990:2	0/1:0,111:31:111:1.00:2	0/1:0,86:31:86:1.00:2	0/1:0,105:31:105:1.00:2
chr17	48539035	rs9674937	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,8:29:18:0.444:2	0/1:64,68:28:132:0.515:2	./.	./.	0/1:1,102:28:103:0.990:2	./.	./.	./.	./.
chr17	48545499	rs35596951	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,47:31:101:0.465:2	./.	./.	./.	./.	./.	./.	./.
chr17	48545596	rs34864120	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,51:31:95:0.537:2	0/1:18,26:31:44:0.591:2	0/1:7,9:30:16:0.563:2	0/1:52,52:30:104:0.500:2	0/1:61,40:30:101:0.396:2	0/1:69,48:31:117:0.410:2	./.	./.	0/1:2,106:32:108:0.981:2	0/1:1,83:30:84:0.988:2	0/1:46,41:31:87:0.471:2
chr17	48546054	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:31:65:0.062:2	./.	./.	./.	./.	./.
chr17	48546102	rs35417848	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,14:30:24:0.583:2	./.	./.	./.	./.	./.	./.	./.
chr17	48549791	rs17850845	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,15:27:30:0.500:2	0/1:12,8:26:20:0.400:2	./.	0/1:20,25:29:45:0.556:2	0/1:21,19:28:40:0.475:2	0/1:35,30:29:65:0.462:2	./.	./.	0/1:0,31:28:31:1.00:2	0/1:2,46:28:48:0.958:2	0/1:26,27:28:53:0.509:2
chr17	48557326	rs2290862	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,21:31:58:0.362:2	0/1:14,16:31:30:0.533:2	0/1:0,7:31:7:1.00:2	0/1:0,60:30:60:1.00:2	0/1:17,24:30:41:0.585:2	0/1:40,30:30:70:0.429:2	0/1:1,28:30:29:0.966:2	./.	0/1:0,41:30:41:1.00:2	0/1:0,40:30:40:1.00:2	0/1:0,58:31:58:1.00:2
chr17	48557348	rs2290861	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,27:29:56:0.482:2	0/1:17,15:29:32:0.469:2	0/1:0,8:31:8:1.00:2	0/1:0,62:29:62:1.00:2	0/1:24,20:28:44:0.455:2	0/1:41,26:30:67:0.388:2	0/1:0,31:29:31:1.00:2	./.	0/1:1,42:30:43:0.977:2	0/1:0,34:30:34:1.00:2	0/1:0,58:29:58:1.00:2
chr17	48559559	rs7210579	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,14:32:37:0.378:2	./.	./.	0/1:1,23:32:24:0.958:2	./.	./.	./.	./.
chr17	48594690	rs141768814	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,35:30:83:0.422:2	./.	./.	./.	./.	./.
chr17	48594775	rs114335869	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,45:31:84:0.536:2	./.	./.	./.	./.	./.	./.	./.
chr17	48594973	rs75706684	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,51:31:98:0.520:2	./.	./.	./.	./.	./.	./.	./.
chr17	48595988	rs8064455	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,21:32:38:0.553:2	./.	./.	./.	./.	./.	./.	./.
chr17	48597114	rs28498091	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,54:29:56:0.964:2	./.	./.	./.	./.	./.	0/1:24,15:30:39:0.385:2	./.
chr17	48598785	rs1380657	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,41:32:98:0.418:2	0/1:36,15:31:51:0.294:2	0/1:0,13:31:13:1.00:2	0/1:0,95:31:95:1.00:2	0/1:54,35:31:89:0.393:2	0/1:55,43:31:98:0.439:2	0/1:0,94:31:94:1.00:2	0/1:49,59:31:108:0.546:2	0/1:0,119:32:119:1.00:2	0/1:0,74:30:74:1.00:2	0/1:0,116:32:116:1.00:2
chr17	48603434	rs61753813	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,34:32:55:0.618:2	./.
chr17	48603503	rs9890721	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:18,13:32:31:0.419:2	0/1:10,14:31:24:0.583:2	0/1:0,3:32:3:1.00:2	./.	0/1:22,34:31:56:0.607:2	0/1:6,25:31:31:0.806:2	0/1:0,29:31:29:1.00:2	0/1:20,20:31:40:0.500:2	0/1:0,46:32:46:1.00:2	0/1:23,10:30:33:0.303:2	0/1:0,57:32:58:1.00:2
chr17	48604704	rs148593348	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,6:30:20:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	48606537	rs1133818	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,17:32:37:0.459:2	0/1:6,3:30:9:0.333:2	0/1:0,2:33:2:1.00:2	0/1:0,34:32:34:1.00:2	0/1:17,14:34:31:0.452:2	0/1:28,19:31:47:0.404:2	0/1:0,33:32:33:1.00:2	0/1:23,20:32:43:0.465:2	0/1:0,24:33:24:1.00:2	0/1:1,15:33:16:0.938:2	0/1:0,34:31:34:1.00:2
chr17	48608717	rs1064055	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,23:30:55:0.418:2	0/1:17,14:30:31:0.452:2	0/1:0,14:30:14:1.00:2	0/1:0,97:29:98:1.00:2	0/1:66,58:29:124:0.468:2	0/1:47,46:30:93:0.495:2	0/1:0,103:30:103:1.00:2	0/1:66,55:30:121:0.455:2	0/1:1,92:30:94:0.989:2	0/1:0,67:29:67:1.00:2	0/1:0,58:28:58:1.00:2
chr17	48616271	rs72835715	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,57:31:124:0.460:2	./.
chr17	48616658	rs72835716	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,21:31:52:0.404:2	./.	./.	./.	./.
chr17	48619249	rs4794159	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:7,8:32:15:0.533:2	0/1:5,5:30:10:0.500:2	0/1:0,5:29:5:1.00:2	0/1:12,11:29:23:0.478:2	0/1:12,10:30:22:0.455:2	0/1:11,8:30:19:0.421:2	0/1:0,13:29:13:1.00:2	0/1:18,10:30:28:0.357:2	0/1:0,26:31:26:1.00:2	0/1:10,7:27:17:0.412:2	0/1:0,19:31:19:1.00:2
chr17	48619272	rs111678638	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:32:5:0.800:2	./.	./.	./.	./.	./.	./.	./.
chr17	48625928	rs8076632	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:16,7:30:23:0.304:2	0/1:10,8:31:18:0.444:2	./.	0/1:0,10:31:10:1.00:2	./.	./.	./.	./.	0/1:0,20:31:20:1.00:2	./.	0/1:14,17:31:31:0.548:2
chr17	48626182	rs199769425	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,7:20:113:0.062:2	./.	0/1:84,10:18:94:0.106:2
chr17	48628092	rs1132414	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:13,16:32:29:0.552:2	0/1:5,11:33:16:0.688:2	./.	0/1:12,13:33:25:0.520:2	./.	./.	./.	./.	0/1:0,29:33:29:1.00:2	./.	0/1:18,19:33:37:0.514:2
chr17	48628242	rs139980663	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,34:31:75:0.453:2	./.	./.	./.	./.
chr17	48628470	rs9913430	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:32,21:30:53:0.396:2	0/1:27,22:29:49:0.449:2	./.	0/1:42,39:30:81:0.481:2	./.	./.	./.	./.	0/1:2,83:30:85:0.976:2	./.	0/1:28,25:30:53:0.472:2
chr17	48628510	.	C	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,7:27:49:0.143:2	./.	0/1:42,7:26:49:0.143:2	0/1:42,4:27:46:0.087:2	./.	./.	./.
chr17	48628511	rs149572077	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,7:30:28:0.250:2	./.	./.	0/1:37,8:28:45:0.178:2	0/1:39,17:25:56:0.304:2	0/1:32,12:28:44:0.273:2	0/1:42,16:28:58:0.276:2	0/1:42,19:27:61:0.311:2	0/1:31,19:29:50:0.380:2	0/1:25,7:27:32:0.219:2	0/1:17,6:30:23:0.261:2
chr17	48629370	rs142268700	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,54:32:122:0.443:2	./.	./.	./.	./.	./.	./.	./.
chr17	48629458	rs8065903	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,64:32:121:0.529:2	0/1:58,29:31:87:0.333:2	0/1:0,10:32:10:1.00:2	0/1:1,167:32:168:0.994:2	0/1:109,71:31:181:0.394:2	0/1:120,50:32:170:0.294:2	0/1:0,148:31:148:1.00:2	0/1:123,58:32:181:0.320:2	0/1:0,159:33:159:1.00:2	0/1:83,86:31:169:0.509:2	0/1:0,121:31:121:1.00:2
chr17	48631684	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:33:185:0.022:2	./.	./.
chr17	48653130	rs116920450	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,16:32:24:0.667:2	./.	./.
chr17	48653354	rs12449998	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:31:3:1.00:2	0/1:0,32:31:32:1.00:2	0/1:9,26:32:35:0.743:2	0/1:18,17:31:35:0.486:2	0/1:0,16:32:16:1.00:2	./.	./.	0/1:5,9:31:14:0.643:2	0/1:0,8:29:8:1.00:2
chr17	48680170	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,31:27:97:0.320:2	./.	./.	./.	./.	./.	./.
chr17	48692787	rs200825775	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,8:20:60:0.133:2
chr17	48701800	rs2301835	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,82:32:161:0.509:2	./.	./.
chr17	48703752	rs739925	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:17,21:32:39:0.553:2	0/1:20,21:32:41:0.512:2	./.	0/1:52,61:32:113:0.540:2	./.	./.	./.	./.	0/1:41,29:33:70:0.414:2	./.	0/1:28,24:31:52:0.462:2
chr17	48703986	rs9893223	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,25:30:53:0.472:2	./.	0/1:14,15:32:29:0.517:2	./.
chr17	48712319	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.
chr17	48734409	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:31:121:0.033:2	./.
chr17	48741194	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:33:149:0.027:2	./.	./.	./.
chr17	48741200	rs140303181	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:33:116:0.034:2	./.	./.	./.	./.	./.
chr17	48741453	rs201203647	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,46:31:111:0.414:2	./.	./.	./.	./.	./.
chr17	48750358	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,4:31:120:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr17	48750883	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:32:139:0.029:2	./.	./.
chr17	48753045	rs34502058	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,92:33:192:0.479:2	./.	./.
chr17	48753077	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,5:30:190:0.026:2
chr17	48753423	rs4148416	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,30:31:71:0.423:2	./.	0/1:49,35:30:84:0.417:2	./.	./.	./.	./.	./.
chr17	48761053	rs11568591	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,31:30:31:1.00:2	0/1:0,14:30:14:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	48761105	rs2277624	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,20:32:37:0.556:2	./.	0/1:12,13:30:25:0.520:2	0/1:0,68:32:68:1.00:2	0/1:17,17:30:34:0.500:2	./.	0/1:22,12:32:34:0.353:2	./.
chr17	48764941	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,36:31:74:0.486:2	./.	./.	./.	./.	./.	./.
chr17	48768486	rs1051640	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,89:33:91:0.978:2	0/1:82,70:32:152:0.461:2	./.	0/1:49,40:32:89:0.449:2	./.
chr17	48774319	rs3815378	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,41:32:97:0.423:2	./.	./.	./.	./.	./.	./.	./.
chr17	48777958	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:32:147:0.027:2	./.	./.	./.
chr17	48818502	rs35882911	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,43:31:107:0.402:2
chr17	48913478	rs77632597	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:51,29:27:80:0.363:2	0/1:36,22:30:58:0.379:2	0/1:8,11:27:19:0.579:2	./.	./.	./.	./.	0/1:87,100:29:188:0.535:2	./.	./.	0/1:50,56:29:106:0.528:2
chr17	48917333	rs9675120	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,31:30:52:0.596:2	0/1:11,22:31:33:0.667:2	./.	./.	0/1:53,47:30:100:0.470:2	0/1:1,78:30:80:0.987:2	0/1:0,57:30:57:1.00:2	0/1:46,32:30:78:0.410:2	0/1:28,33:31:62:0.541:2	./.	0/1:46,37:31:83:0.446:2
chr17	48917645	rs35114322	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,24:32:71:0.338:2	0/1:58,46:30:104:0.442:2	./.	./.	./.	./.	./.	./.
chr17	48940422	rs4626	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:41,48:32:89:0.539:2	0/1:25,31:32:56:0.554:2	0/1:10,5:31:15:0.333:2	./.	0/1:0,71:32:71:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,84:32:84:1.00:2	0/1:53,57:32:110:0.518:2	0/1:57,57:33:114:0.500:2	./.	0/1:62,58:33:120:0.483:2
chr17	48941092	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,4:32:119:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr17	49079095	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:30:36:0.111:2	./.	./.	./.	./.
chr17	49083528	rs6504692	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,61:31:148:0.412:2	./.	./.	./.
chr17	49238618	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,5:26:150:0.033:2
chr17	49239123	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,6:33:145:0.041:2	./.
chr17	49247366	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:31:127:0.031:2	./.	./.	./.	0/1:100,6:31:106:0.057:2
chr17	49247393	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,5:32:111:0.045:2
chr17	49281203	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:31:118:0.034:2	./.	./.
chr17	49338257	rs14180	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,13:30:22:0.591:2	0/1:11,7:31:18:0.389:2	./.	0/1:5,16:30:21:0.762:2	0/1:15,19:30:34:0.559:2	./.	./.	./.	./.	./.	./.
chr17	49338275	rs8907	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:5,6:31:11:0.545:2	./.	./.	./.	0/1:20,13:28:33:0.394:2	./.	0/1:0,27:29:27:1.00:2	0/1:4,6:31:10:0.600:2	./.	./.
chr17	49350802	rs2318789	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:32:6:1.00:2	./.	0/1:19,14:31:33:0.424:2	./.	0/1:16,19:33:35:0.543:2	./.	0/1:18,12:33:30:0.400:2	./.	0/1:0,38:33:38:1.00:2
chr17	49354603	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:34:81:0.049:2	./.	./.
chr17	49710846	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,5:26:166:0.030:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	49713300	rs11870209	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,34:32:73:0.466:2	0/1:2,39:32:41:0.951:2	0/1:0,55:31:55:1.00:2	0/1:30,22:32:52:0.423:2	./.	./.	./.	0/1:1,82:32:83:0.988:2
chr17	49825038	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:32:140:0.029:2
chr17	51900729	rs3803824	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,16:31:28:0.571:2	0/1:10,15:30:25:0.600:2	./.	0/1:17,16:31:33:0.485:2	./.	./.	0/1:7,12:32:19:0.632:2	./.
chr17	51900836	rs59657238	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,10:31:24:0.417:2	./.	./.	0/1:12,14:29:26:0.538:2
chr17	51901084	rs3803825	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,64:32:65:0.985:2	0/1:0,30:33:30:1.00:2	0/1:7,3:34:10:0.300:2	0/1:1,82:33:83:0.988:2	0/1:46,46:32:92:0.500:2	0/1:57,54:33:111:0.486:2	0/1:48,51:33:99:0.515:2	0/1:86,54:32:140:0.386:2	0/1:58,56:34:114:0.491:2	0/1:0,85:33:85:1.00:2	0/1:1,75:32:76:0.987:2
chr17	51901385	rs3803826	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,28:31:28:1.00:2	./.	0/1:28,28:32:56:0.500:2	./.	0/1:31,21:31:52:0.404:2	./.	./.	0/1:35,18:32:53:0.340:2	0/1:18,21:32:39:0.538:2	0/1:30,18:32:48:0.375:2
chr17	51901643	rs4561518	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,117:32:117:1.00:2	0/1:0,74:32:74:1.00:2	0/1:10,11:31:21:0.524:2	0/1:0,118:31:118:1.00:2	0/1:70,70:32:140:0.500:2	0/1:84,71:31:155:0.458:2	0/1:82,50:32:132:0.379:2	0/1:71,58:32:129:0.450:2	0/1:72,77:32:149:0.517:2	0/1:0,149:32:149:1.00:2	0/1:1,131:32:132:0.992:2
chr17	51901703	rs4561519	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:32:74:1.00:2	0/1:0,51:32:51:1.00:2	0/1:4,8:33:12:0.667:2	0/1:0,89:33:90:1.00:2	0/1:28,30:31:58:0.517:2	0/1:60,48:32:108:0.444:2	0/1:52,30:31:82:0.366:2	0/1:54,40:32:94:0.426:2	0/1:54,52:33:106:0.491:2	0/1:0,76:33:76:1.00:2	0/1:1,81:32:82:0.988:2
chr17	51902252	rs3826355	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:32:43:1.00:2	0/1:0,39:32:39:1.00:2	0/1:6,3:32:9:0.333:2	0/1:0,50:31:50:1.00:2	0/1:34,23:30:57:0.404:2	0/1:22,23:31:45:0.511:2	0/1:33,19:33:52:0.365:2	0/1:42,22:31:64:0.344:2	0/1:34,28:32:62:0.452:2	0/1:1,56:31:57:0.982:2	0/1:0,77:31:78:1.00:2
chr17	52978265	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,14:31:38:0.368:2	./.	./.	./.	./.	./.
chr17	53038654	rs1802212	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,22:32:56:0.393:2	./.	./.	./.	./.
chr17	53076799	rs1156287	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,115:33:115:1.00:2	0/1:1,86:32:87:0.989:2	0/1:0,4:32:4:1.00:2	0/1:0,122:33:122:1.00:2	0/1:1,112:32:113:0.991:2	0/1:0,121:32:121:1.00:2	0/1:65,31:33:96:0.323:2	0/1:0,131:32:131:1.00:2	0/1:0,117:34:117:1.00:2	0/1:0,125:33:125:1.00:2	0/1:60,67:33:127:0.528:2
chr17	53076986	rs11658717	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:32:60:1.00:2	0/1:0,36:32:36:1.00:2	0/1:5,7:31:12:0.583:2	0/1:2,51:31:53:0.962:2	0/1:1,45:31:46:0.978:2	0/1:0,53:31:53:1.00:2	0/1:31,22:31:53:0.415:2	0/1:0,68:31:68:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,50:32:50:1.00:2	0/1:65,61:32:126:0.484:2
chr17	53121020	rs17818142	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,136:32:138:0.986:2	0/1:56,36:33:92:0.391:2	0/1:68,40:32:108:0.370:2	0/1:53,68:33:121:0.562:2	./.	./.
chr17	53158445	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:33:95:0.042:2	./.
chr17	53158492	rs8069999	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,134:31:135:0.993:2	0/1:46,60:32:106:0.566:2	0/1:89,84:32:174:0.486:2	0/1:93,82:32:175:0.469:2	./.	./.
chr17	53345355	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:30:73:0.055:2	./.	./.	./.
chr17	53485186	rs2286806	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:32:8:1.00:2	0/1:34,41:30:75:0.547:2	0/1:33,25:32:58:0.431:2	0/1:37,36:31:73:0.493:2	0/1:2,58:32:60:0.967:2	./.	./.	0/1:42,30:31:72:0.417:2	./.
chr17	53851228	rs2960062	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:32:33:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,27:33:27:1.00:2	0/1:24,14:32:38:0.368:2	0/1:0,21:32:21:1.00:2
chr17	53851237	rs34608946	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,6:32:18:0.333:2
chr17	54450038	rs957724	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,23:30:23:1.00:2	0/1:0,23:31:23:1.00:2	./.	0/1:0,24:29:24:1.00:2	0/1:11,12:29:23:0.522:2	0/1:8,8:30:16:0.500:2	0/1:11,9:31:20:0.450:2	0/1:25,17:30:42:0.405:2	./.	0/1:15,9:31:24:0.375:2	0/1:0,32:31:32:1.00:2
chr17	54450134	rs8069322	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,29:32:29:1.00:2	0/1:0,25:31:25:1.00:2	./.	0/1:0,43:32:43:1.00:2	0/1:24,16:31:40:0.400:2	0/1:24,19:31:43:0.442:2	0/1:0,47:32:47:1.00:2	0/1:28,32:32:60:0.533:2	./.	0/1:25,16:31:41:0.390:2	0/1:0,45:32:45:1.00:2
chr17	54534634	rs10852985	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,76:32:77:0.987:2	0/1:0,36:32:36:1.00:2	./.	0/1:0,59:31:59:1.00:2	0/1:40,22:32:62:0.355:2	0/1:55,36:31:91:0.396:2	0/1:0,22:32:22:1.00:2	0/1:57,36:31:93:0.387:2	0/1:53,53:33:106:0.500:2	0/1:44,25:32:69:0.362:2	0/1:0,118:32:118:1.00:2
chr17	54872439	rs72837329	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:24,19:29:43:0.442:2	0/1:13,11:32:24:0.458:2	./.	./.	0/1:33,30:32:63:0.476:2	./.	0/1:86,43:31:129:0.333:2	./.	0/1:45,38:33:83:0.458:2	./.	0/1:18,42:31:60:0.700:2
chr17	54912191	rs146866423	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,13:31:18:0.722:2
chr17	54912339	rs1048159	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:11,13:30:24:0.542:2	0/1:10,6:32:16:0.375:2	./.	./.	0/1:18,29:29:47:0.617:2	./.	0/1:8,13:30:21:0.619:2	0/1:12,22:31:34:0.647:2	0/1:8,10:32:18:0.556:2	./.	0/1:3,5:31:8:0.625:2
chr17	54921494	rs3760158	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,58:32:117:0.496:2	0/1:38,41:32:79:0.519:2	0/1:0,9:32:9:1.00:2	0/1:62,44:33:106:0.415:2	0/1:45,24:31:69:0.348:2	0/1:2,79:32:81:0.975:2	0/1:47,19:33:66:0.288:2	0/1:62,26:32:88:0.295:2	0/1:77,60:33:137:0.438:2	0/1:0,65:33:65:1.00:2	0/1:102,63:32:165:0.382:2
chr17	54978794	rs205498	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,83:31:84:0.988:2	0/1:0,47:30:47:1.00:2	0/1:1,5:31:6:0.833:2	0/1:0,98:30:99:1.00:2	0/1:0,77:30:77:1.00:2	0/1:0,105:30:105:1.00:2	./.	0/1:45,71:31:116:0.612:2	0/1:55,53:31:108:0.491:2	0/1:34,40:30:74:0.541:2	./.
chr17	54991007	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:34:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	55026765	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:31:147:0.027:2	./.	./.
chr17	55027061	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:32:93:0.043:2	./.
chr17	55027111	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:31:135:0.030:2	./.
chr17	55027112	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:31:136:0.029:2	./.
chr17	55027480	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	55027850	rs8071691	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,51:32:88:0.580:2	0/1:21,23:32:44:0.523:2	0/1:0,7:32:7:1.00:2	0/1:55,44:32:99:0.444:2	0/1:30,41:32:71:0.577:2	0/1:0,89:31:89:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,75:32:75:1.00:2	0/1:39,42:33:81:0.519:2	0/1:0,80:32:80:1.00:2	0/1:0,94:32:94:1.00:2
chr17	55028170	rs61731978	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	./.	0/1:4,74:32:78:0.949:2	./.	./.	0/1:52,46:32:98:0.469:2	./.
chr17	55079471	rs12940187	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,33:33:58:0.569:2	0/1:19,20:33:39:0.513:2	./.	0/1:38,25:33:63:0.397:2	0/1:19,23:32:42:0.548:2	./.	./.	./.	0/1:58,22:33:80:0.275:2	./.	./.
chr17	55182878	rs17761023	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:30:11:0.636:2	./.	./.	./.	0/1:5,138:31:143:0.965:2	0/1:98,75:30:173:0.434:2	./.	./.	./.
chr17	55183203	rs2230772	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,4:29:14:0.286:2	0/1:70,63:30:133:0.474:2	0/1:50,60:29:110:0.545:2	0/1:55,63:29:118:0.534:2	./.	0/1:77,83:30:160:0.519:2	0/1:64,70:31:134:0.522:2	0/1:73,36:30:109:0.330:2	0/1:54,55:28:109:0.505:2
chr17	55183477	rs73991770	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:3,8:31:11:0.727:2	./.	0/1:5,7:28:12:0.583:2	./.	./.	./.	./.	./.	./.	./.
chr17	55183716	rs1050515	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,18:32:33:0.545:2	0/1:16,9:32:25:0.360:2	0/1:0,6:33:6:1.00:2	0/1:0,46:32:46:1.00:2	0/1:31,27:31:58:0.466:2	0/1:0,52:32:52:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,65:32:65:1.00:2	0/1:22,36:32:58:0.621:2	0/1:20,17:33:37:0.459:2	0/1:32,28:32:60:0.467:2
chr17	55183726	rs61731968	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,22:30:50:0.440:2	./.	./.	./.	./.	./.
chr17	55183792	rs35359994	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,3:28:19:0.158:2	0/1:2,6:24:8:0.750:2	0/1:13,10:32:23:0.435:2	./.	./.	./.
chr17	55183813	rs34535433	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,12:31:14:0.857:2	0/1:16,8:31:24:0.333:2	./.	./.	./.
chr17	55183989	rs73991771	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:24,12:30:36:0.333:2	0/1:15,16:32:31:0.516:2	./.	0/1:42,48:30:90:0.533:2	./.	./.	./.	./.	./.	./.	./.
chr17	55184250	rs73991772	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:30,27:33:57:0.474:2	0/1:15,26:32:41:0.634:2	./.	0/1:49,42:33:91:0.462:2	./.	./.	./.	./.	./.	./.	./.
chr17	55187420	rs76415802	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,34:30:68:0.500:2	./.	./.	./.	./.	./.
chr17	55191921	rs73317574	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:32:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	55193551	rs116543447	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,36:31:81:0.444:2	./.	./.	./.	./.	./.
chr17	55607061	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:31:97:0.041:2	./.	./.	./.	./.
chr17	55822171	rs12451748	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,31:31:71:0.437:2	0/1:32,9:32:41:0.220:2	./.	./.	./.	0/1:68,37:31:105:0.352:2	./.	0/1:67,70:32:137:0.511:2	0/1:61,30:32:91:0.330:2	0/1:1,55:32:56:0.982:2	0/1:0,60:33:60:1.00:2
chr17	55822214	rs12451753	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,24:27:70:0.343:2	0/1:36,11:31:47:0.234:2	./.	./.	./.	0/1:76,39:29:115:0.339:2	./.	0/1:87,67:29:155:0.435:2	0/1:75,43:31:119:0.364:2	0/1:0,64:30:67:1.00:2	0/1:0,55:29:55:1.00:2
chr17	55822467	rs12449409	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,32:31:77:0.416:2	0/1:18,19:31:37:0.514:2	./.	./.	./.	0/1:67,58:30:125:0.464:2	./.	0/1:63,54:30:117:0.462:2	0/1:42,64:30:106:0.604:2	0/1:0,82:31:82:1.00:2	0/1:1,81:30:83:0.988:2
chr17	55945598	rs34800498	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,44:33:92:0.478:2	./.	./.
chr17	55946562	rs79637497	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,5:31:6:0.833:2	./.	0/1:0,28:29:28:1.00:2	./.	./.	./.	./.	./.	./.
chr17	55950064	rs35704289	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,92:31:97:0.948:2	./.	./.	0/1:43,30:29:73:0.411:2
chr17	55951037	rs17762338	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,98:31:101:0.980:2	./.	./.	0/1:51,33:32:84:0.393:2
chr17	55962665	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,3:32:18:0.167:2	./.	./.	./.	./.	./.	./.
chr17	56052046	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:177,5:32:182:0.027:2	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.	./.	./.	./.	0/1:187,4:32:192:0.021:2
chr17	56052086	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.	./.	./.	0/1:189,5:29:194:0.026:2	./.	./.	./.	./.	./.
chr17	56052195	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,5:31:172:0.029:2	./.	./.	./.
chr17	56052203	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,5:27:163:0.031:2	./.	./.	./.
chr17	56056550	rs1135655	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,80:33:191:0.419:2	0/1:108,79:33:187:0.422:2	./.	./.	./.
chr17	56056607	rs73995411	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:122,28:30:150:0.187:2	./.	./.	./.	./.	./.	./.
chr17	56057992	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,5:33:199:0.025:2	./.	./.	./.	./.
chr17	56060129	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:99,5:27:104:0.048:2	./.	./.	./.	./.	./.	./.
chr17	56060281	rs201537599	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,81:30:186:0.435:2	./.	./.	./.	./.	./.
chr17	56060431	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,3:33:47:0.064:2	./.	./.	./.	./.	./.	./.
chr17	56060647	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:32:99:0.040:2	./.	./.
chr17	56232675	rs12602205	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:32,32:33:64:0.500:2	0/1:30,21:32:51:0.412:2	./.	0/1:50,38:33:88:0.432:2	./.	./.	./.	./.	./.	./.	0/1:62,49:32:111:0.441:2
chr17	56233234	rs62636635	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:88,73:30:161:0.453:2	0/1:58,49:30:108:0.458:2	./.	0/1:83,92:29:175:0.526:2	./.	./.	./.	./.	./.	./.	./.
chr17	56247101	rs60994383	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:47,28:31:75:0.373:2	0/1:30,20:31:50:0.400:2	0/1:6,3:29:9:0.333:2	./.	./.	./.	./.	./.	./.	0/1:39,30:31:69:0.435:2	0/1:65,44:30:109:0.404:2
chr17	56247306	rs80043692	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:33:9:0.444:2	./.	./.	./.	./.	0/1:23,20:32:43:0.465:2	./.	./.	./.
chr17	56247454	rs9912728	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:31:5:0.800:2	./.	./.	./.	./.	0/1:27,22:31:49:0.449:2	./.	./.	./.
chr17	56247575	rs74730740	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:26:14:0.286:2	./.	./.	./.	./.	0/1:75,58:30:133:0.436:2	./.	./.	./.
chr17	56270442	rs11079339	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	0/1:32,21:32:53:0.396:2
chr17	56271094	rs11652709	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,33:32:33:1.00:2	./.	./.	./.	0/1:103,78:32:181:0.431:2	./.	./.	./.	0/1:68,40:32:108:0.370:2
chr17	56272390	rs2240815	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:34:3:1.00:2	./.	./.	0/1:34,29:33:63:0.460:2	0/1:32,33:32:65:0.508:2	./.	./.	0/1:27,20:32:47:0.426:2	0/1:33,31:33:64:0.484:2
chr17	56274589	rs35232062	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,21:28:34:0.618:2	./.	./.
chr17	56276940	rs35750729	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,20:30:36:0.556:2	./.
chr17	56282968	rs17174788	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:48,43:33:91:0.473:2	0/1:27,27:33:54:0.500:2	./.	0/1:63,52:33:115:0.452:2	./.	./.	./.	./.	./.	./.	0/1:76,68:33:144:0.472:2
chr17	56283026	rs2302313	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,40:31:73:0.548:2	./.	./.	./.	./.
chr17	56283449	rs11548967	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,11:30:28:0.393:2	./.
chr17	56296580	rs372471169	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,28:31:39:0.718:2	./.	./.	./.	./.	./.
chr17	56326521	rs8178329	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:28:6:0.500:2	./.	./.	./.	0/1:34,27:28:61:0.443:2	./.	./.	./.	0/1:43,24:25:67:0.358:2
chr17	56327032	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	56332327	rs2301870	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,36:31:37:0.973:2	./.	./.	./.	0/1:27,19:31:46:0.413:2
chr17	56344867	rs8178409	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:30:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	0/1:50,29:32:80:0.367:2
chr17	56348106	rs2759	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,83:30:192:0.432:2	./.
chr17	56350963	rs201002054	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,66:31:145:0.455:2	./.	./.	./.	./.	./.
chr17	56356426	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,4:30:45:0.089:2	./.	./.	./.	./.	./.	./.
chr17	56356502	rs56378716	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,61:29:143:0.427:2	./.	./.	./.	./.
chr17	56356552	rs145046200	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:31:38:0.105:2
chr17	56357725	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,21:9:133:0.158:2	./.	./.	./.
chr17	56357818	rs7208693	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,50:31:104:0.481:2
chr17	56382477	rs2301868	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,27:30:50:0.540:2	./.	./.	./.	./.
chr17	56382512	rs11867412	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,8:31:19:0.421:2	0/1:15,8:31:23:0.348:2	./.	./.	./.	0/1:12,18:30:30:0.600:2	./.	0/1:15,20:31:35:0.571:2	0/1:0,23:32:23:1.00:2	0/1:0,29:31:29:1.00:2	./.
chr17	56383187	rs3744102	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,10:31:15:0.667:2	0/1:3,5:32:8:0.625:2	./.	./.	./.	0/1:0,21:31:21:1.00:2	0/1:20,17:31:37:0.459:2	0/1:12,9:32:21:0.429:2	0/1:1,16:31:17:0.941:2	0/1:0,14:31:14:1.00:2	./.
chr17	56383690	rs72839985	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,31:32:72:0.431:2	./.	./.	./.	./.
chr17	56383744	rs11079346	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,7:26:31:0.226:2	0/1:16,12:27:28:0.429:2	./.	./.	./.	0/1:3,61:27:64:0.953:2	0/1:36,34:29:70:0.486:2	0/1:25,39:28:64:0.609:2	0/1:0,52:28:52:1.00:2	0/1:0,46:27:46:1.00:2	0/1:32,16:28:48:0.333:2
chr17	56386084	rs147085967	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,43:31:86:0.500:2	./.	./.	./.	./.	./.
chr17	56386118	rs2680689	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,18:31:32:0.563:2	0/1:7,4:31:11:0.364:2	./.	./.	./.	0/1:3,60:30:63:0.952:2	0/1:38,35:30:73:0.479:2	0/1:31,42:30:73:0.575:2	0/1:0,71:30:71:1.00:2	0/1:0,53:30:53:1.00:2	0/1:23,31:29:54:0.574:2
chr17	56386358	rs2526360	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,17:29:38:0.447:2	0/1:6,4:31:10:0.400:2	./.	./.	./.	0/1:0,20:30:20:1.00:2	0/1:13,13:30:26:0.500:2	0/1:11,19:29:30:0.633:2	0/1:0,38:31:38:1.00:2	0/1:0,17:31:17:1.00:2	0/1:22,13:30:35:0.371:2
chr17	56386386	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,4:21:18:0.222:2	./.	./.	./.	0/1:6,4:28:10:0.400:2	./.
chr17	56388238	rs2680704	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,8:32:19:0.421:2	0/1:11,13:32:24:0.542:2	./.	./.	./.	0/1:22,11:32:33:0.333:2	0/1:15,8:33:23:0.348:2	0/1:16,12:33:28:0.429:2	0/1:0,36:33:36:1.00:2	0/1:0,24:33:24:1.00:2	0/1:28,20:33:48:0.417:2
chr17	56388303	rs3744099	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,14:33:45:0.311:2
chr17	56389631	rs9905604	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,6:29:12:0.500:2
chr17	56389732	rs9913145	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,10:30:30:0.333:2	./.	./.	./.	0/1:21,8:30:29:0.276:2
chr17	56393840	rs61739511	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,5:32:6:0.833:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	56395683	rs2072148	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,88:32:167:0.527:2	0/1:90,63:33:153:0.412:2	./.	./.	./.	./.
chr17	56395757	rs2072147	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,45:29:100:0.455:2	0/1:54,41:28:95:0.432:2	./.	./.	./.	./.
chr17	56396587	rs2072146	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,23:31:53:0.434:2
chr17	56396609	rs2072145	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,16:30:56:0.286:2	0/1:52,11:28:63:0.175:2	./.	./.	./.	./.
chr17	56404133	rs61732577	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,49:29:98:0.500:2	./.	./.	./.	./.	./.
chr17	56405024	rs61743272	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,16:30:39:0.410:2	0/1:29,24:29:53:0.453:2	./.	./.	./.
chr17	56405103	rs146385838	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,16:30:47:0.340:2	./.	./.	./.	./.	./.
chr17	56432362	rs2158460	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:28,22:32:50:0.440:2	0/1:12,8:31:20:0.400:2	./.	0/1:39,21:33:60:0.350:2	./.	0/1:30,17:32:47:0.362:2	./.	./.	./.	./.	0/1:30,23:32:53:0.434:2
chr17	56432376	rs2158459	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,14:30:39:0.359:2	./.	./.	./.	./.	./.
chr17	56435885	rs2526374	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:31,19:31:50:0.380:2	0/1:10,21:32:31:0.677:2	./.	./.	./.	./.	0/1:37,32:31:69:0.464:2	./.	./.	./.	0/1:24,25:31:49:0.510:2
chr17	56436109	rs34523089	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:3,9:31:12:0.750:2	0/1:7,12:32:19:0.632:2	./.	0/1:14,14:31:28:0.500:2	./.	./.	0/1:8,9:32:17:0.529:2	./.	./.	./.	0/1:10,4:30:14:0.286:2
chr17	56437543	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:30:85:0.047:2	./.	./.
chr17	56438156	rs141997049	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,4:30:37:0.108:2
chr17	56438301	rs2680701	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,49:32:116:0.422:2	./.	0/1:79,49:32:128:0.383:2	0/1:0,87:33:87:1.00:2	0/1:0,83:33:83:1.00:2	./.
chr17	56439937	rs373068965	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,31:30:56:0.554:2	./.	./.	./.	./.	./.	./.	./.
chr17	56448297	rs2257205	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,46:29:48:0.958:2	./.	0/1:26,26:28:53:0.500:2	0/1:39,32:29:71:0.451:2	./.	./.	./.
chr17	56492800	rs3744093	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:25,14:32:39:0.359:2	0/1:6,11:34:17:0.647:2	0/1:0,4:33:4:1.00:2	./.	./.	./.	0/1:0,28:32:28:1.00:2	0/1:21,22:32:43:0.512:2	./.	./.	0/1:23,29:33:52:0.558:2
chr17	56540267	rs3803752	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:88,97:32:185:0.524:2	0/1:48,42:31:90:0.467:2	./.	0/1:111,80:32:191:0.419:2	./.	./.	./.	./.	./.	./.	0/1:107,64:32:171:0.374:2
chr17	56540647	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:33:52:0.077:2	./.	./.	./.	./.
chr17	56544280	rs1017089	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:33:34:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,54:32:54:1.00:2	0/1:1,52:33:53:0.981:2	0/1:0,53:33:53:1.00:2	0/1:0,60:34:60:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,46:33:46:1.00:2
chr17	56569178	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:30:71:0.056:2
chr17	56572347	rs61744121	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,88:30:177:0.497:2	./.	./.	./.	./.	./.	./.	./.
chr17	56572710	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,3:32:35:0.086:2	./.	./.	./.	./.	./.
chr17	56584205	rs2302189	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:17,12:33:29:0.414:2	0/1:10,6:32:16:0.375:2	0/1:0,2:31:2:1.00:2	./.	./.	./.	0/1:1,47:32:48:0.979:2	0/1:32,22:33:54:0.407:2	./.	./.	0/1:11,19:32:30:0.633:2
chr17	56584508	rs2302190	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,56:30:125:0.448:2	0/1:1,72:29:73:0.986:2	0/1:56,38:30:94:0.404:2	./.	./.	./.	./.	./.
chr17	56585872	rs3744108	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:78,48:29:126:0.381:2	0/1:43,38:29:81:0.469:2	0/1:0,22:30:22:1.00:2	./.	./.	./.	0/1:1,115:29:116:0.991:2	0/1:66,54:30:120:0.450:2	./.	./.	0/1:80,54:29:134:0.403:2
chr17	56598439	rs1057068	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:90,72:30:162:0.444:2	0/1:51,58:30:109:0.532:2	0/1:1,29:30:30:0.967:2	./.	./.	./.	0/1:4,189:29:193:0.979:2	0/1:97,97:30:194:0.500:2	./.	./.	0/1:87,90:29:177:0.508:2
chr17	56620167	rs17822735	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:21,20:32:41:0.488:2	0/1:25,20:33:45:0.444:2	./.	0/1:26,23:32:49:0.469:2	./.	./.	./.	./.	./.	./.	0/1:34,27:31:61:0.443:2
chr17	56620501	rs17222523	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:47,30:30:77:0.390:2	0/1:28,30:29:58:0.517:2	./.	0/1:45,43:29:88:0.489:2	./.	./.	./.	./.	./.	./.	0/1:56,61:31:117:0.521:2
chr17	56621286	rs8071623	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,133:30:134:0.993:2	0/1:1,56:31:57:0.982:2	0/1:1,19:29:20:0.950:2	0/1:2,163:30:165:0.988:2	0/1:1,152:29:153:0.993:2	0/1:80,87:29:167:0.521:2	0/1:0,158:30:158:1.00:2	0/1:85,93:30:178:0.522:2	./.	./.	0/1:0,131:29:131:1.00:2
chr17	56621359	rs6503867	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,107:28:108:0.991:2	0/1:0,49:28:49:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,127:29:127:1.00:2	0/1:0,138:29:138:1.00:2	0/1:74,64:28:138:0.464:2	0/1:0,123:29:123:1.00:2	0/1:59,49:29:108:0.454:2	./.	./.	0/1:0,108:28:108:1.00:2
chr17	56636854	rs7225128	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,186:33:186:1.00:2	0/1:0,186:33:186:1.00:2	0/1:0,40:33:40:1.00:2	0/1:1,194:33:195:0.995:2	0/1:0,154:32:154:1.00:2	0/1:103,92:33:196:0.472:2	0/1:0,161:33:162:1.00:2	0/1:112,82:33:194:0.423:2	./.	./.	0/1:1,190:34:191:0.995:2
chr17	56636908	rs9903050	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,169:32:175:0.966:2	0/1:79,80:33:160:0.503:2	./.	./.	./.	./.	./.
chr17	56643109	rs34818467	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:45,34:30:79:0.430:2	0/1:30,19:29:49:0.388:2	./.	0/1:43,51:29:94:0.543:2	./.	./.	./.	./.	./.	./.	0/1:46,32:28:78:0.410:2
chr17	56659018	rs6503870	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,18:32:27:0.667:2	0/1:7,12:32:19:0.632:2	./.	0/1:0,35:31:35:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,21:30:21:1.00:2	./.	0/1:15,27:32:42:0.643:2	0/1:0,40:32:40:1.00:2	0/1:0,32:31:32:1.00:2	0/1:43,27:31:70:0.386:2
chr17	56663409	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:123,4:33:127:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr17	56670986	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:33:161:0.025:2
chr17	56676368	rs389389	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,51:31:109:0.468:2	./.	0/1:85,59:33:144:0.410:2	0/1:1,155:33:157:0.994:2	0/1:0,102:32:102:1.00:2	./.
chr17	56676964	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.
chr17	56682450	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:32:177:0.023:2	./.	./.	./.	./.	./.
chr17	56688648	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,24:30:52:0.462:2	./.	./.	./.	./.	./.
chr17	56690848	rs8077548	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,72:32:72:1.00:2	0/1:58,56:33:114:0.491:2	./.	./.	./.	./.	./.
chr17	56738319	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,5:30:147:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	56738803	rs377226469	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,57:32:126:0.452:2	0/1:20,28:33:48:0.583:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	56738919	rs4340382	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,13:29:14:0.929:2	0/1:17,12:31:29:0.414:2	./.	./.	./.	./.	./.
chr17	56774108	.	T	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:107,31:25:138:0.225:2	0/1:96,11:14:108:0.103:2	./.	0/1:114,31:21:145:0.214:2	0/1:100,39:19:139:0.281:2	0/1:105,49:20:154:0.318:2	0/1:107,42:18:149:0.282:2	0/1:112,27:19:139:0.194:2	0/1:104,28:18:132:0.212:2	0/1:105,45:22:151:0.300:2	0/1:104,27:22:131:0.206:2
chr17	56774121	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,12:16:127:0.094:2	./.	./.	./.	./.	./.
chr17	56798128	rs28363317	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,27:33:44:0.614:2	./.	./.
chr17	56833454	rs77856248	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,3:33:33:0.091:2	0/1:31,5:32:36:0.139:2	./.
chr17	56833457	rs201186780	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,3:32:28:0.107:2	0/1:31,6:29:37:0.162:2	./.
chr17	56833490	rs59676153	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,3:31:32:0.094:2	./.	0/1:30,3:31:34:0.091:2	./.
chr17	56833491	rs58091258	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,3:32:32:0.094:2	./.	0/1:30,3:33:33:0.091:2	./.
chr17	57049573	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:34:102:0.039:2	./.	./.
chr17	57089719	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,4:32:67:0.060:2	./.	./.	./.	./.	./.	./.	./.
chr17	57128625	rs74586224	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,18:33:63:0.286:2	./.	./.	./.	./.	./.	./.	./.
chr17	57140015	rs145324030	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,12:32:33:0.364:2	./.	./.	./.	./.	./.	./.	./.
chr17	57287454	rs6503905	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:5,6:26:11:0.545:2	0/1:8,4:30:12:0.333:2	./.	0/1:16,9:26:25:0.360:2	./.	0/1:1,11:27:12:0.917:2	./.	0/1:6,15:29:21:0.714:2	0/1:0,19:29:19:1.00:2	0/1:0,11:26:11:1.00:2	0/1:8,10:25:18:0.556:2
chr17	57290383	rs3744383	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,20:31:47:0.426:2	0/1:19,17:31:36:0.472:2	./.	./.	./.	0/1:33,43:31:76:0.566:2	./.	./.	./.	./.	0/1:48,39:32:87:0.448:2
chr17	57290852	rs137980220	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,56:31:131:0.431:2	./.	./.	./.	./.	./.
chr17	57290880	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:32:71:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	57651196	rs143179414	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,75:32:191:0.393:2	./.	./.	./.	./.	./.
chr17	57676168	rs139117700	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,57:29:195:0.292:2
chr17	57721735	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,26:33:42:0.619:2	./.
chr17	57760343	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,4:32:152:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr17	57851126	rs118082621	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,16:29:40:0.400:2	./.	./.	./.	./.	./.	./.
chr17	57951973	rs2250526	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,58:31:125:0.464:2
chr17	57958451	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,39:32:99:0.394:2	./.	./.	./.
chr17	57963537	rs1292053	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,41:30:84:0.488:2	0/1:20,19:29:39:0.487:2	./.	0/1:54,46:30:101:0.460:2	0/1:65,4:30:69:0.058:2	./.	0/1:0,75:30:75:1.00:2	./.	0/1:73,63:31:136:0.463:2	0/1:0,96:30:96:1.00:2	0/1:2,110:30:112:0.982:2
chr17	57987987	rs188619686	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,23:33:58:0.397:2	./.
chr17	58009016	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:33:196:0.020:2
chr17	58013606	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:33:71:0.056:2	./.	./.	./.	./.
chr17	58013643	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:31:76:0.053:2	./.	./.	./.	./.
chr17	58013909	rs180523	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,38:32:84:0.452:2	0/1:25,19:31:44:0.432:2	./.	./.	./.	./.	./.	./.	0/1:32,49:33:81:0.605:2	0/1:37,33:32:70:0.471:2	0/1:49,40:32:89:0.449:2
chr17	58030469	rs146980146	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,23:32:51:0.451:2	./.	./.	./.	./.	./.
chr17	58031412	rs11368	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:79,70:33:149:0.470:2	0/1:43,31:33:74:0.419:2	./.	0/1:71,56:33:127:0.441:2	./.	0/1:88,58:32:146:0.397:2	0/1:1,113:33:114:0.991:2	./.	0/1:62,58:34:120:0.483:2	0/1:0,118:33:118:1.00:2	0/1:0,164:33:164:1.00:2
chr17	58039923	rs112835092	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:32:139:0.029:2	./.	./.	./.	./.	./.
chr17	58041961	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:33:103:0.039:2
chr17	58121453	rs16943991	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,38:31:91:0.418:2	./.	./.	0/1:60,61:31:121:0.504:2	./.	./.	0/1:48,38:31:86:0.442:2	./.
chr17	58134507	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:27:14:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	58156064	rs3744376	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:31:12:0.500:2	./.	./.	0/1:4,4:32:8:0.500:2	./.	./.	0/1:2,5:32:7:0.714:2	./.
chr17	58257924	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,4:30:98:0.041:2	./.	./.	./.	./.	./.	./.
chr17	58257980	rs17405746	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,5:31:137:0.036:2	./.	./.	./.
chr17	58258724	rs17405732	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:187,4:33:191:0.021:2	./.	./.	./.	./.	./.	./.
chr17	58270211	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:33:112:0.036:2	./.	./.	./.
chr17	58270212	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:33:113:0.035:2	./.	./.	./.
chr17	58282979	.	T	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:184,5:33:189:0.026:2	0/1:148,5:31:153:0.033:2	./.	0/1:168,4:31:172:0.023:2	./.	./.	./.	./.	./.	0/1:173,5:30:178:0.028:2	./.
chr17	58282992	rs7210262	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,6:32:160:0.038:2	./.
chr17	58283006	rs138207619	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:33:148:0.027:2	./.
chr17	58283007	rs140449325	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,65:31:146:0.445:2	./.	./.	./.	./.	./.	./.	./.
chr17	58284396	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:33:199:0.020:2	./.
chr17	58285542	rs147413172	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:146,48:32:194:0.247:2	0/1:137,46:32:183:0.251:2	0/1:42,6:31:48:0.125:2	0/1:145,53:32:198:0.268:2	./.	0/1:149,43:31:192:0.224:2	./.	./.	./.	0/1:109,81:32:190:0.426:2	0/1:161,37:32:198:0.187:2
chr17	58286758	.	C	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:189,4:32:193:0.021:2	0/1:193,5:33:198:0.025:2	./.	0/1:179,10:30:189:0.053:2	./.	0/1:174,7:33:181:0.039:2	0/1:187,6:32:194:0.031:2	0/1:178,6:31:184:0.033:2
chr17	58288390	rs56870378	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,46:30:200:0.230:2	./.	./.	./.	./.	./.
chr17	58288421	rs146577219	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:145,53:32:198:0.268:2	0/1:115,32:32:148:0.218:2	0/1:23,6:29:29:0.207:2	0/1:165,33:32:198:0.167:2	./.	0/1:151,44:31:195:0.226:2	./.	./.	./.	0/1:129,69:32:198:0.348:2	0/1:166,32:32:198:0.162:2
chr17	58288841	rs2627867	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:149,7:32:156:0.045:2	0/1:125,8:31:133:0.060:2	./.	./.	./.	0/1:185,5:32:191:0.026:2	./.	./.	./.	./.	0/1:174,7:31:181:0.039:2
chr17	58289389	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:136,5:31:141:0.035:2	./.	./.	./.	./.	./.	./.
chr17	58289415	rs199769573	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:189,8:30:197:0.041:2	0/1:130,7:31:137:0.051:2	./.	0/1:188,11:30:199:0.055:2	0/1:184,10:31:194:0.052:2	0/1:182,17:31:199:0.085:2	0/1:175,17:31:193:0.089:2	0/1:189,9:32:198:0.045:2	0/1:191,8:32:199:0.040:2	0/1:188,10:31:198:0.051:2	0/1:188,9:32:197:0.046:2
chr17	58289417	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2	./.	./.	./.	./.	./.	0/1:192,5:33:197:0.025:2
chr17	58292024	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:139,22:33:161:0.137:2	0/1:139,7:31:146:0.048:2	./.	./.	./.	./.	0/1:165,20:32:185:0.108:2	./.	./.	./.	./.
chr17	58499987	rs79813353	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,16:10:84:0.190:2	./.	./.	./.	./.
chr17	58499989	rs200863948	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,20:22:70:0.286:2	./.	0/1:6,5:21:11:0.455:2	0/1:57,18:15:75:0.240:2	0/1:57,26:16:83:0.313:2	0/1:47,21:16:68:0.309:2	0/1:51,35:15:86:0.407:2	0/1:60,37:13:97:0.381:2	0/1:71,14:15:85:0.165:2	0/1:49,20:18:69:0.290:2	0/1:46,15:21:62:0.246:2
chr17	58508582	rs8071181	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,9:31:33:0.273:2	./.	./.	./.	./.	./.
chr17	58508618	rs3760332	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,7:30:16:0.438:2	./.	0/1:9,9:29:18:0.500:2	./.	./.	./.	./.	./.
chr17	58678214	rs148074313	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,92:32:195:0.472:2	./.	./.	./.	./.	./.
chr17	58734036	rs201423110	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:31:145:0.028:2
chr17	58786625	rs2643103	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:32:58:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,51:33:51:1.00:2	0/1:0,25:32:25:1.00:2	0/1:13,29:32:42:0.690:2	0/1:0,40:33:40:1.00:2	0/1:0,70:33:70:1.00:2	0/1:2,63:33:65:0.969:2	0/1:0,45:32:45:1.00:2	0/1:2,69:32:71:0.972:2
chr17	58824567	rs7501675	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:30:44:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,42:30:42:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,67:30:67:1.00:2
chr17	58824617	rs34431714	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,9:32:30:0.300:2	./.	./.	./.	./.
chr17	59001807	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,18:30:180:0.100:2	./.	./.	./.	./.
chr17	59477903	rs75743672	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,43:31:70:0.614:2	./.	./.	./.	./.	./.	./.
chr17	59485555	rs1057987	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:29:18:1.00:2	0/1:0,18:30:18:1.00:2	0/1:1,3:30:4:0.750:2	0/1:8,16:30:24:0.667:2	./.	0/1:0,45:28:46:1.00:2	0/1:14,10:29:24:0.417:2	0/1:15,33:28:48:0.688:2	0/1:10,16:29:26:0.615:2	0/1:1,28:30:30:0.966:2	0/1:0,20:30:20:1.00:2
chr17	59489707	rs77617620	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,5:29:8:0.625:2	0/1:21,29:29:50:0.580:2	./.	./.	0/1:16,18:30:34:0.529:2	./.	./.	./.	./.
chr17	59489893	rs9907379	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.
chr17	59490235	rs11871637	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:33:3:1.00:2	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.
chr17	59533868	rs3744448	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:31:18:0.500:2	./.	./.	./.	./.	0/1:59,56:31:115:0.487:2	0/1:47,18:31:65:0.277:2	./.	./.
chr17	59534987	rs3744447	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,51:30:99:0.515:2	0/1:35,69:31:104:0.663:2	./.	./.
chr17	59557600	rs3744438	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,28:30:52:0.560:2	./.	0/1:18,34:30:52:0.654:2	./.	0/1:30,51:30:81:0.630:2	./.	./.	0/1:16,20:30:36:0.556:2
chr17	59560463	rs7218485	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,34:29:83:0.410:2	./.	./.	./.	./.	./.	./.	0/1:30,34:29:64:0.531:2
chr17	59560685	rs2270150	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,24:30:57:0.421:2	0/1:21,17:32:38:0.447:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,63:30:101:0.624:2
chr17	59560751	rs117324438	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,9:30:14:0.643:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	59667953	rs17610181	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,14:32:32:0.438:2	./.	./.	./.	./.	./.	0/1:101,73:33:174:0.420:2	./.	./.
chr17	59668021	rs61739273	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,17:33:33:0.515:2	./.	./.	./.	./.	./.	0/1:79,73:33:152:0.480:2	./.	./.
chr17	59668318	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:146,7:33:153:0.046:2	0/1:80,4:29:84:0.048:2	./.	./.	./.	./.	./.	./.
chr17	59668349	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:137,7:32:144:0.049:2	0/1:84,4:31:88:0.045:2	./.	./.	./.	./.	./.	./.
chr17	59668352	rs17531723	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:31:12:0.667:2	./.	./.	./.	./.	./.	0/1:78,58:32:136:0.426:2	./.	./.
chr17	59668381	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:133,7:31:140:0.050:2	./.	./.	./.	./.	./.	./.	./.
chr17	59668487	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:31:103:0.039:2
chr17	59668517	rs61748812	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,26:32:53:0.491:2	./.	./.	./.	./.	./.	./.	./.
chr17	59760996	rs4986763	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,25:29:47:0.532:2	0/1:14,17:29:31:0.548:2	./.	0/1:0,25:29:25:1.00:2	0/1:0,32:28:32:1.00:2	0/1:11,13:30:24:0.542:2	0/1:14,10:28:24:0.417:2	0/1:0,16:26:16:1.00:2	0/1:0,23:30:23:1.00:2	0/1:11,11:29:22:0.500:2	0/1:21,18:28:39:0.462:2
chr17	59761401	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,24:34:45:0.533:2	./.	./.
chr17	59763347	rs4986764	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:100,95:32:195:0.487:2	0/1:69,39:32:108:0.361:2	./.	0/1:2,190:32:192:0.990:2	0/1:0,114:31:114:1.00:2	0/1:114,81:32:195:0.415:2	0/1:91,78:32:169:0.462:2	0/1:5,174:32:179:0.972:2	0/1:0,183:33:183:1.00:2	0/1:110,80:33:190:0.421:2	0/1:113,82:32:195:0.421:2
chr17	59763465	rs4986765	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:79,51:33:130:0.392:2	0/1:32,35:32:67:0.522:2	0/1:3,3:32:6:0.500:2	0/1:0,97:32:97:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,82:32:82:1.00:2	0/1:48,37:33:85:0.435:2	0/1:0,88:32:88:1.00:2	0/1:0,108:33:108:1.00:2	0/1:0,68:32:68:1.00:2	0/1:96,53:33:149:0.356:2
chr17	59878741	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:31:67:0.060:2	./.	./.	./.	./.	./.
chr17	59924572	rs4988345	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,38:32:108:0.352:2	./.	./.	./.
chr17	59946430	.	C	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:83,9:23:92:0.098:2	./.	./.	./.	0/1:92,13:22:105:0.124:2	./.	0/1:94,10:17:104:0.096:2	0/1:104,14:22:118:0.119:2	./.	0/1:63,8:25:71:0.113:2	0/1:115,15:27:130:0.115:2
chr17	59947140	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:32:191:0.021:2	./.	./.	./.
chr17	59955426	rs606072	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:32:60:1.00:2	0/1:0,55:33:55:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,84:31:84:1.00:2	0/1:0,56:33:56:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,95:33:95:1.00:2	0/1:1,42:32:43:0.977:2	0/1:0,101:33:101:1.00:2
chr17	60040329	rs2278812	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,18:32:38:0.474:2	0/1:13,8:31:21:0.381:2	./.	./.	./.	./.	./.	./.
chr17	60042558	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,5:33:184:0.027:2	./.
chr17	60043884	rs671347	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,99:32:99:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,94:31:94:1.00:2	0/1:0,85:31:85:1.00:2	0/1:0,108:31:108:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,123:32:123:1.00:2	0/1:0,142:33:142:1.00:2	0/1:0,120:32:120:1.00:2	0/1:0,129:33:129:1.00:2
chr17	60045416	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,4:30:85:0.047:2	./.	./.	./.	./.	./.	./.
chr17	60060206	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,6:32:188:0.032:2	./.	./.
chr17	60464688	rs9909704	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:32:28:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,23:29:23:1.00:2	0/1:0,11:31:11:1.00:2	0/1:2,32:31:34:0.941:2	0/1:0,33:32:33:1.00:2	0/1:1,20:31:21:0.952:2	0/1:0,24:29:24:1.00:2
chr17	60493386	rs78388447	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,71:33:162:0.438:2
chr17	60501671	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:33:96:0.042:2	./.	./.	./.	./.
chr17	60503892	rs2543409	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:32:49:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,51:32:51:1.00:2	0/1:1,34:30:35:0.971:2	0/1:1,35:31:36:0.972:2	0/1:1,25:31:26:0.962:2	0/1:0,40:31:40:1.00:2	0/1:0,54:32:54:1.00:2	0/1:1,36:31:37:0.973:2	0/1:0,58:32:58:1.00:2
chr17	60503921	rs2319055	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:33:22:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,3:35:3:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,25:32:25:1.00:2
chr17	60503962	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,3:32:38:0.079:2	./.	0/1:32,4:31:36:0.111:2	./.	./.	0/1:33,10:33:43:0.233:2	./.	./.
chr17	60505123	rs142704564	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,27:30:81:0.333:2	./.	./.	./.
chr17	60512662	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:84,9:33:93:0.097:2	0/1:56,4:32:60:0.067:2	0/1:9,4:32:13:0.308:2	0/1:63,6:31:69:0.087:2	0/1:53,18:31:71:0.254:2	0/1:68,8:32:76:0.105:2	0/1:48,13:33:61:0.213:2	0/1:62,19:31:81:0.235:2	0/1:70,13:34:83:0.157:2	0/1:60,4:32:64:0.063:2	0/1:112,14:32:128:0.111:2
chr17	60525047	rs3750154	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,88:30:193:0.456:2	./.	./.	./.	./.	./.
chr17	60525994	rs1053125	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:136,5:32:141:0.035:2	./.	0/1:124,7:33:131:0.053:2	./.	0/1:133,4:32:137:0.029:2	./.	./.	./.
chr17	60598198	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,6:33:110:0.055:2	./.	./.	./.	./.
chr17	60599571	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr17	60599626	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,4:33:143:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr17	60601655	.	G	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:173,13:32:186:0.070:2	0/1:99,15:32:114:0.132:2	./.	./.	0/1:178,18:31:196:0.092:2	./.	0/1:166,25:31:191:0.131:2	0/1:183,12:32:195:0.062:2	0/1:189,7:31:196:0.036:2	0/1:187,5:33:192:0.026:2	0/1:173,10:33:183:0.055:2
chr17	60629689	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:132,64:34:196:0.327:2	0/1:112,66:33:178:0.371:2	./.	./.	./.	./.	0/1:159,35:33:194:0.180:2	./.	0/1:170,28:34:198:0.141:2	0/1:166,33:32:199:0.166:2	0/1:163,31:34:194:0.160:2
chr17	60629760	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,6:32:57:0.109:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	60642384	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:32:155:0.026:2	./.	./.	./.
chr17	60655870	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,3:31:22:0.136:2	./.	./.	./.	./.
chr17	60655888	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,3:32:28:0.107:2	./.	./.	./.	./.
chr17	60655904	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,3:32:31:0.097:2	./.	./.	./.	./.
chr17	60679418	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,3:32:41:0.073:2	./.	./.	./.
chr17	60683503	rs8078132	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,28:28:67:0.418:2	0/1:33,13:27:46:0.283:2	0/1:4,7:29:11:0.636:2	0/1:3,60:28:63:0.952:2	./.	0/1:29,23:29:52:0.442:2	0/1:0,26:27:26:1.00:2	0/1:51,37:28:88:0.420:2	0/1:50,33:29:83:0.398:2	0/1:4,53:27:57:0.930:2	0/1:3,91:28:94:0.968:2
chr17	60689860	rs199800827	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,22:29:106:0.208:2	./.	0/1:133,20:30:153:0.131:2	./.	./.	0/1:91,12:29:103:0.117:2
chr17	60741917	rs2014055	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,29:31:58:0.500:2	0/1:13,21:30:34:0.618:2	./.	./.	./.	0/1:37,25:30:62:0.403:2	./.	./.	0/1:34,41:32:75:0.547:2	0/1:42,34:32:76:0.447:2	0/1:30,40:31:71:0.571:2
chr17	60753159	rs34887251	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,27:32:58:0.466:2	./.	./.	./.	./.	./.
chr17	60757821	rs201112479	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,12:30:31:0.400:2	./.	./.
chr17	60758225	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,4:29:87:0.046:2	./.	./.	./.	./.	./.	./.
chr17	60758273	rs2245463	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:29:36:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,9:28:9:1.00:2	0/1:0,75:30:75:1.00:2	0/1:0,72:30:72:1.00:2	0/1:0,84:29:84:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,69:30:69:1.00:2	0/1:0,55:29:55:1.00:2	0/1:0,22:30:22:1.00:2
chr17	60766224	rs2465430	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:28:50:1.00:2	0/1:0,38:28:38:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,66:28:66:1.00:2	0/1:0,66:27:66:1.00:2	0/1:0,57:28:57:1.00:2	0/1:0,53:28:53:1.00:2	0/1:0,73:28:73:1.00:2	0/1:0,57:29:57:1.00:2	0/1:0,23:28:23:1.00:2	0/1:0,45:28:45:1.00:2
chr17	60766897	rs200283554	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,16:28:27:0.593:2	./.	./.	./.	./.	./.
chr17	60767015	rs2429387	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:31:37:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,22:31:22:1.00:2
chr17	60768486	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,15:32:33:0.455:2	0/1:12,11:31:23:0.478:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	60769803	rs3826537	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,10:33:15:0.667:2	0/1:0,7:28:7:1.00:2	0/1:2,5:29:7:0.714:2	0/1:13,21:33:34:0.618:2	0/1:0,28:32:28:1.00:2	0/1:12,21:32:34:0.636:2	./.	0/1:15,17:33:32:0.531:2	./.	./.	0/1:7,10:32:17:0.588:2
chr17	60779134	rs202231961	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,21:32:51:0.412:2	./.	./.	./.	./.	./.
chr17	60813627	rs2041283	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,31:31:63:0.492:2	0/1:24,8:32:32:0.250:2	0/1:2,3:31:5:0.600:2	0/1:41,21:31:62:0.339:2	0/1:0,53:30:53:1.00:2	0/1:31,43:30:74:0.581:2	./.	0/1:38,29:31:67:0.433:2	./.	./.	0/1:42,36:30:78:0.462:2
chr17	60814009	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:31:49:0.082:2	./.
chr17	60814273	rs9891498	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,46:32:120:0.383:2	0/1:49,27:32:76:0.355:2	0/1:6,8:29:14:0.571:2	0/1:83,66:33:149:0.443:2	0/1:2,70:32:72:0.972:2	0/1:75,77:32:152:0.507:2	./.	0/1:75,75:33:150:0.500:2	./.	./.	0/1:96,76:33:172:0.442:2
chr17	60879076	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:122,4:32:126:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr17	61021611	rs17759989	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,48:32:110:0.436:2	0/1:39,33:31:72:0.458:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	61151390	rs76121095	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,3:32:11:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	61315209	rs147422041	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,29:31:60:0.483:2	./.	./.	./.
chr17	61315272	rs2460111	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,35:32:65:0.538:2	0/1:18,13:33:31:0.419:2	./.	./.	./.	0/1:38,25:31:63:0.397:2	0/1:18,18:32:36:0.500:2	./.	0/1:0,33:32:33:1.00:2	0/1:22,12:31:34:0.353:2	0/1:0,75:32:75:1.00:2
chr17	61483527	rs61737624	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,17:32:25:0.680:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	61498500	rs117474655	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,11:29:21:0.524:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	61512597	rs200701370	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,15:10:42:0.357:2	./.	./.	./.
chr17	61514746	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:32:81:0.049:2	./.	./.	./.	./.	./.
chr17	61557200	rs4298	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,25:31:52:0.481:2	./.	./.	0/1:12,8:31:20:0.400:2	./.
chr17	61557773	rs3730025	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,14:33:49:0.286:2	0/1:17,17:33:34:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	61559923	rs4309	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,66:33:66:1.00:2	0/1:1,37:32:38:0.974:2	./.	./.	./.	0/1:0,101:32:101:1.00:2	0/1:60,55:31:115:0.478:2	0/1:44,52:32:96:0.542:2	0/1:0,89:33:89:1.00:2	./.	0/1:0,65:31:65:1.00:2
chr17	61560846	rs148943954	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,3:33:20:0.150:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	61562309	rs4316	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,29:31:54:0.537:2	0/1:12,11:31:23:0.478:2	./.	./.	./.	0/1:2,70:30:72:0.972:2	0/1:41,57:30:98:0.582:2	0/1:47,48:30:95:0.505:2	0/1:0,63:32:63:1.00:2	./.	0/1:0,69:32:69:1.00:2
chr17	61564052	rs4331	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,21:30:57:0.368:2	0/1:30,16:29:46:0.348:2	./.	./.	./.	0/1:0,65:29:65:1.00:2	0/1:82,31:30:113:0.274:2	0/1:42,50:30:92:0.543:2	0/1:1,89:30:90:0.989:2	./.	0/1:0,87:30:87:1.00:2
chr17	61566031	rs4343	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,14:30:28:0.500:2	0/1:11,7:31:18:0.389:2	./.	./.	./.	0/1:0,34:31:34:1.00:2	0/1:22,11:32:33:0.333:2	0/1:25,23:32:48:0.479:2	0/1:0,25:32:25:1.00:2	./.	0/1:0,33:31:34:1.00:2
chr17	61568577	rs3730043	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,24:31:46:0.522:2	./.	./.	./.	./.
chr17	61570836	rs3730044	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,40:30:118:0.339:2	./.
chr17	61573761	rs4362	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,42:31:75:0.560:2	0/1:23,28:31:51:0.549:2	./.	./.	./.	0/1:0,123:30:123:1.00:2	0/1:68,67:31:135:0.496:2	0/1:68,76:31:144:0.528:2	0/1:0,119:32:119:1.00:2	./.	0/1:0,87:31:87:1.00:2
chr17	61574302	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:104,4:31:108:0.037:2	./.	./.	./.	./.	./.	./.
chr17	61607708	rs7221517	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:28:9:0.444:2	0/1:3,117:30:120:0.975:2	0/1:87,51:30:138:0.370:2	0/1:58,73:30:132:0.557:2	./.	./.	./.	./.	./.
chr17	61611276	rs143700601	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,3:31:30:0.100:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	61611294	rs377545632	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:33,3:31:36:0.083:2	0/1:8,3:31:11:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	61611324	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,3:30:14:0.214:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	61611423	rs7225568	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,19:32:19:1.00:2	0/1:0,149:32:149:1.00:2	0/1:82,79:32:161:0.491:2	0/1:73,72:32:145:0.497:2	0/1:83,65:33:148:0.439:2	0/1:78,74:33:152:0.487:2	0/1:75,52:33:128:0.409:2	0/1:0,141:32:141:1.00:2	0/1:50,29:32:79:0.367:2
chr17	61611569	.	A	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:80,24:15:104:0.231:2	0/1:50,10:19:60:0.167:2	0/1:15,7:14:22:0.318:2	0/1:84,30:12:114:0.263:2	0/1:100,49:11:149:0.329:2	0/1:76,33:13:109:0.303:2	0/1:86,42:11:128:0.328:2	0/1:78,44:14:122:0.361:2	0/1:97,33:14:130:0.254:2	0/1:74,19:11:93:0.204:2	0/1:52,18:12:70:0.257:2
chr17	61613079	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,5:22:56:0.089:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	61615545	rs147985248	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,24:31:69:0.348:2	./.	./.	./.	./.
chr17	61615788	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.
chr17	61621410	rs117321085	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,44:32:83:0.530:2	./.	./.	./.
chr17	61621420	rs143048027	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,48:32:83:0.578:2	./.	./.	./.	./.
chr17	61623052	rs35819807	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,29:32:65:0.446:2	0/1:48,29:31:77:0.377:2	0/1:30,27:33:57:0.474:2	0/1:0,36:32:36:1.00:2	0/1:25,35:32:60:0.583:2
chr17	61683799	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:165,4:34:169:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr17	61768592	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,4:33:88:0.045:2	./.	./.	./.	./.	./.	./.	./.
chr17	61771060	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,24:32:69:0.348:2	0/1:15,17:31:32:0.531:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	61776222	rs200123283	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,12:15:150:0.080:2
chr17	61781032	rs200730710	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:127,4:30:131:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr17	61805747	rs4968597	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,10:31:24:0.417:2	0/1:14,11:30:25:0.440:2	./.	0/1:8,9:31:17:0.529:2	0/1:5,5:29:10:0.500:2	0/1:19,5:31:24:0.208:2	0/1:0,21:32:21:1.00:2	0/1:0,24:31:24:1.00:2	0/1:2,30:32:32:0.938:2	0/1:0,23:32:23:1.00:2	0/1:24,15:32:39:0.385:2
chr17	61833625	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	61838259	rs11654841	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,39:31:66:0.591:2	0/1:16,17:31:33:0.515:2	./.	0/1:44,51:32:95:0.537:2	0/1:47,41:32:88:0.466:2	0/1:50,48:31:98:0.490:2	0/1:0,64:32:64:1.00:2	0/1:2,120:32:122:0.984:2	0/1:2,71:33:73:0.973:2	0/1:0,78:32:78:1.00:2	0/1:55,46:32:101:0.455:2
chr17	61842208	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:32:130:0.031:2	./.	./.
chr17	61886179	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:33:164:0.024:2	./.
chr17	61888461	rs56197520	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:85,4:33:89:0.045:2	./.	./.	./.	0/1:26,13:31:39:0.333:2	./.	./.	./.	./.	./.	./.
chr17	61901197	rs2727288	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,46:31:82:0.561:2	0/1:21,35:31:56:0.625:2	./.	0/1:51,68:31:119:0.571:2	0/1:46,42:30:88:0.477:2	0/1:49,49:31:98:0.500:2	0/1:0,91:31:91:1.00:2	0/1:2,125:31:128:0.984:2	0/1:0,87:32:87:1.00:2	0/1:0,75:32:75:1.00:2	0/1:51,48:31:99:0.485:2
chr17	61903445	rs2584625	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,29:33:58:0.500:2	0/1:22,14:32:36:0.389:2	./.	0/1:56,43:32:99:0.434:2	0/1:42,27:32:69:0.391:2	0/1:53,37:32:90:0.411:2	0/1:0,64:32:64:1.00:2	0/1:2,101:32:103:0.981:2	0/1:0,94:33:94:1.00:2	0/1:0,79:32:79:1.00:2	0/1:45,60:32:105:0.571:2
chr17	61904885	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,6:26:66:0.091:2	0/1:95,6:28:101:0.059:2	./.	0/1:61,6:28:67:0.090:2	./.
chr17	61906846	rs2665833	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,41:31:68:0.603:2	0/1:21,25:31:46:0.543:2	./.	0/1:47,25:30:72:0.347:2	0/1:40,35:30:75:0.467:2	0/1:42,31:30:73:0.425:2	0/1:2,65:31:67:0.970:2	0/1:0,97:30:97:1.00:2	0/1:1,63:31:64:0.984:2	0/1:0,60:30:60:1.00:2	0/1:39,38:31:77:0.494:2
chr17	61908271	rs968719	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:48,26:32:74:0.351:2	0/1:21,19:31:40:0.475:2	./.	0/1:38,25:31:63:0.397:2	0/1:46,25:30:71:0.352:2	0/1:49,41:31:90:0.456:2	0/1:0,74:32:74:1.00:2	0/1:0,106:31:106:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,55:30:55:1.00:2	0/1:40,46:29:86:0.535:2
chr17	61908556	rs13030	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:22,26:32:48:0.542:2	0/1:20,18:32:38:0.474:2	./.	./.	0/1:25,35:31:60:0.583:2	./.	0/1:43,18:32:61:0.295:2	0/1:1,69:32:70:0.986:2	0/1:26,34:33:60:0.567:2	./.	0/1:24,18:32:42:0.429:2
chr17	61950967	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:32:188:0.021:2
chr17	61950978	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:32:181:0.022:2
chr17	61950979	rs149143935	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:80,41:31:121:0.339:2	0/1:67,26:31:94:0.280:2	./.	./.	0/1:124,49:30:173:0.283:2	./.	0/1:131,50:31:181:0.276:2	0/1:5,144:30:149:0.966:2	0/1:134,58:31:194:0.302:2	./.	0/1:123,57:31:181:0.317:2
chr17	61958015	rs149856185	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:33:58:0.069:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	61959155	rs148779841	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,8:29:187:0.043:2	./.	./.	./.	./.	./.
chr17	61959165	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,9:32:185:0.049:2	./.	./.	./.	./.	./.
chr17	61973513	rs141257177	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:44,4:30:48:0.083:2	./.	0/1:3,3:31:6:0.500:2	./.	0/1:3,6:29:9:0.667:2	./.	0/1:2,4:31:6:0.667:2	./.	0/1:2,3:33:5:0.600:2	0/1:109,4:31:113:0.035:2
chr17	61973865	rs201722031	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:154,33:32:187:0.176:2	0/1:102,8:32:110:0.073:2	./.	./.	0/1:158,35:33:194:0.181:2	./.	0/1:141,52:31:193:0.269:2	0/1:153,39:33:192:0.203:2	0/1:158,29:34:187:0.155:2	./.	0/1:152,39:32:191:0.204:2
chr17	61987179	rs200319165	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,80:29:195:0.410:2	./.	./.	./.	./.	./.
chr17	61987570	rs2727307	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,24:31:24:1.00:2	0/1:133,57:32:191:0.300:2	0/1:148,39:31:187:0.209:2	0/1:132,53:31:185:0.286:2	./.	0/1:140,51:32:191:0.267:2	./.	./.	0/1:122,59:32:181:0.326:2
chr17	61987576	rs2246207	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,26:30:27:1.00:2	0/1:123,51:32:175:0.293:2	0/1:145,42:31:187:0.225:2	0/1:126,52:31:178:0.292:2	./.	0/1:132,51:31:184:0.279:2	./.	./.	0/1:122,56:32:178:0.315:2
chr17	61987812	rs147070430	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:157,5:27:162:0.031:2	./.	./.	./.	./.	./.	./.
chr17	61988118	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,6:30:153:0.039:2	./.	./.	./.	./.
chr17	61988123	rs370962985	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,6:32:160:0.038:2	./.	./.	./.	./.
chr17	61988157	rs201773152	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,6:29:194:0.031:2	./.	./.	./.	./.
chr17	61994777	rs4080078	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	61994788	rs151243538	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:32:188:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	61996130	rs2001345	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,99:33:185:0.535:2	./.	./.	./.	./.	./.
chr17	61996140	rs6173	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,80:30:186:0.430:2	./.	./.	./.	./.	./.
chr17	62007498	rs2070776	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:60,3:34:63:0.048:2	0/1:0,9:33:9:1.00:2	0/1:0,133:32:133:1.00:2	0/1:102,80:32:182:0.440:2	0/1:1,151:33:152:0.993:2	0/1:99,83:33:182:0.456:2	0/1:89,76:32:165:0.461:2	0/1:77,71:33:148:0.480:2	0/1:0,114:32:114:1.00:2	0/1:57,53:32:110:0.482:2
chr17	62018164	rs2227906	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,17:29:50:0.340:2	./.	./.	./.	./.	./.
chr17	62018773	rs2070720	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,15:30:15:1.00:2	0/1:82,55:29:137:0.401:2	0/1:80,56:29:136:0.412:2	0/1:2,121:28:123:0.984:2	./.	./.	./.	./.	0/1:73,56:29:129:0.434:2
chr17	62018786	rs187323518	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,76:29:146:0.521:2	./.	./.	./.	./.	./.	./.
chr17	62019103	rs56342400	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,65:31:187:0.348:2	0/1:104,88:31:192:0.458:2	0/1:95,70:33:165:0.424:2	0/1:1,129:32:130:0.992:2	./.
chr17	62020348	rs2058194	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,53:29:53:1.00:2	0/1:84,93:29:178:0.525:2	0/1:110,84:29:194:0.433:2	0/1:1,177:28:178:0.994:2	0/1:112,83:28:195:0.426:2	0/1:97,91:28:188:0.484:2	0/1:89,95:29:184:0.516:2	0/1:2,176:30:178:0.989:2	0/1:104,84:28:188:0.447:2
chr17	62022382	rs72851170	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,75:32:139:0.540:2	./.	./.	0/1:23,37:33:60:0.617:2	./.
chr17	62028920	rs41280102	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,101:32:186:0.543:2	./.	./.	./.
chr17	62029022	.	T	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,22:11:85:0.259:2	0/1:67,25:10:92:0.272:2	0/1:60,22:13:82:0.268:2	0/1:49,20:9:69:0.290:2	0/1:83,31:11:114:0.272:2	./.	0/1:59,22:12:81:0.272:2	./.
chr17	62041068	rs6504191	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:31:29:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,48:30:48:1.00:2	0/1:40,18:31:58:0.310:2	0/1:0,51:30:51:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,34:30:34:1.00:2	0/1:24,18:31:42:0.429:2
chr17	62045467	rs199676994	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,105:29:196:0.536:2	./.	./.	./.	./.	./.	./.
chr17	62082519	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,56:33:137:0.409:2	./.	./.	./.	./.
chr17	62121480	rs196912	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,45:27:45:1.00:2	0/1:0,27:30:27:1.00:2	./.	0/1:36,32:28:68:0.471:2	./.	0/1:0,60:28:60:1.00:2	0/1:2,57:28:59:0.966:2	./.	0/1:42,30:27:72:0.417:2	0/1:0,62:28:63:1.00:2	0/1:31,17:28:48:0.354:2
chr17	62125272	rs196923	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:29:39:1.00:2	0/1:0,13:28:13:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,65:29:65:1.00:2	0/1:0,50:29:51:1.00:2	0/1:3,76:29:79:0.962:2	0/1:0,37:29:37:1.00:2	0/1:0,53:28:53:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,54:29:54:1.00:2
chr17	62131673	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:32:64:0.063:2	./.	./.	./.	./.
chr17	62132160	rs55653398	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,9:32:24:0.375:2	./.	./.	./.	./.	./.	./.
chr17	62133034	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,16:30:30:0.533:2	0/1:17,7:32:24:0.292:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	62133286	rs186305118	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,22:31:49:0.449:2	./.	./.	./.	./.	./.	./.
chr17	62141455	rs187826	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:31:94:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,110:31:110:1.00:2	0/1:0,127:30:127:1.00:2	0/1:1,138:30:139:0.993:2	0/1:1,143:31:144:0.993:2	0/1:0,154:31:154:1.00:2	0/1:0,128:32:128:1.00:2	0/1:0,109:31:109:1.00:2	0/1:2,105:31:107:0.981:2
chr17	62152578	rs75995183	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:29:8:0.375:2	./.	0/1:18,9:29:27:0.333:2	./.	./.	./.	0/1:13,10:29:23:0.435:2	./.	0/1:18,28:31:46:0.609:2
chr17	62270941	rs34343500	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,30:32:69:0.435:2	./.	0/1:61,44:34:105:0.419:2	./.	./.
chr17	62272253	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2	./.
chr17	62290213	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:31:118:0.034:2
chr17	62407030	rs45588632	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,22:32:53:0.415:2	./.
chr17	62476429	rs61733782	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,31:32:65:0.477:2	./.	./.	0/1:42,42:32:84:0.500:2	./.	./.	./.
chr17	62492582	rs1427463	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,36:31:79:0.456:2	./.	./.	0/1:1,139:31:140:0.993:2	./.	./.	./.
chr17	62496670	rs1140409	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,57:32:127:0.449:2	./.
chr17	62500818	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,34:32:70:0.486:2	./.	./.	./.	./.	./.
chr17	62523254	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:36:82:0.049:2	./.	./.
chr17	62529228	rs143058708	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,28:32:72:0.389:2	./.	./.	./.
chr17	62532737	rs140659486	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,32:31:96:0.333:2	./.	./.
chr17	62850707	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,6:31:185:0.032:2	./.	./.	./.	./.
chr17	62852005	.	G	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:194,5:32:199:0.025:2	0/1:186,9:30:195:0.046:2	0/1:91,7:31:98:0.071:2	0/1:186,10:31:196:0.051:2	./.	./.	./.	./.	0/1:192,5:32:197:0.025:2	0/1:193,5:31:199:0.025:2	0/1:189,7:30:196:0.036:2
chr17	62854898	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:32:83:0.049:2	./.	./.	./.	./.
chr17	62855596	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,3:30:21:0.143:2	./.	./.
chr17	62856096	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:32:171:0.024:2
chr17	62856914	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,5:32:176:0.028:2	./.	./.	./.
chr17	62864597	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,5:28:198:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr17	62864637	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:189,6:27:195:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr17	62864650	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,5:30:191:0.026:2	./.	./.
chr17	62891022	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:32:155:0.026:2	./.	0/1:115,8:34:123:0.065:2	./.	./.
chr17	62891049	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,6:31:198:0.030:2	./.	0/1:186,7:33:193:0.036:2	./.	./.
chr17	62891165	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:162,6:29:168:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,9:28:152:0.059:2	./.
chr17	62891981	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,5:33:69:0.072:2	./.	./.	./.	./.
chr17	62891989	rs201712114	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:30,7:31:37:0.189:2	0/1:21,7:32:28:0.250:2	./.	0/1:22,14:32:36:0.389:2	./.	./.	./.	0/1:21,13:32:34:0.382:2	0/1:31,7:33:38:0.184:2	0/1:17,13:31:30:0.433:2	0/1:49,9:32:58:0.155:2
chr17	62892031	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:54,9:29:63:0.143:2	0/1:30,8:31:38:0.211:2	./.	0/1:44,18:30:62:0.290:2	./.	./.	./.	0/1:55,17:31:72:0.236:2	0/1:55,17:31:72:0.236:2	0/1:34,26:30:60:0.433:2	0/1:88,24:31:112:0.214:2
chr17	62892071	rs200470091	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:85,25:32:110:0.227:2	0/1:44,18:31:62:0.290:2	0/1:11,3:33:14:0.214:2	0/1:69,38:32:107:0.355:2	./.	./.	./.	0/1:88,36:31:125:0.290:2	0/1:88,42:33:130:0.323:2	0/1:66,63:33:129:0.488:2	0/1:127,37:32:165:0.226:2
chr17	62892159	rs199539333	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:141,43:31:184:0.234:2	0/1:102,32:31:134:0.239:2	./.	0/1:138,51:30:189:0.270:2	./.	./.	./.	0/1:160,33:31:193:0.171:2	0/1:149,22:33:171:0.129:2	0/1:119,63:32:182:0.346:2	0/1:165,26:31:191:0.136:2
chr17	62892271	rs79445332	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:99,88:31:187:0.471:2	0/1:85,105:31:190:0.553:2	0/1:24,17:31:42:0.415:2	0/1:94,100:30:194:0.515:2	./.	./.	./.	0/1:119,74:31:193:0.383:2	0/1:108,84:32:192:0.438:2	0/1:85,104:31:189:0.550:2	0/1:101,84:31:185:0.454:2
chr17	62892413	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:35,45:33:80:0.563:2	0/1:26,27:32:53:0.509:2	./.	0/1:54,36:32:90:0.400:2	./.	./.	./.	0/1:31,24:31:55:0.436:2	0/1:51,28:33:79:0.354:2	0/1:28,38:32:66:0.576:2	0/1:65,45:32:110:0.409:2
chr17	62892442	rs201370086	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:32,40:32:72:0.556:2	0/1:30,16:30:46:0.348:2	./.	0/1:54,33:32:87:0.379:2	./.	./.	./.	0/1:41,22:32:63:0.349:2	0/1:58,23:33:81:0.284:2	0/1:30,43:31:73:0.589:2	0/1:75,39:29:114:0.342:2
chr17	62892532	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:59,9:32:68:0.132:2	0/1:47,10:33:57:0.175:2	./.	0/1:91,18:31:109:0.165:2	0/1:128,13:31:141:0.092:2	./.	0/1:142,9:30:151:0.060:2	0/1:81,6:32:87:0.069:2	0/1:113,16:32:129:0.124:2	0/1:84,11:32:95:0.116:2	./.
chr17	62892919	.	C	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:132,5:30:137:0.036:2	./.	0/1:190,7:29:197:0.036:2	0/1:182,12:29:194:0.062:2	0/1:190,7:30:197:0.036:2	./.	./.	0/1:187,9:32:196:0.046:2	./.	0/1:188,8:29:196:0.041:2
chr17	63149617	rs185197038	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,46:31:101:0.460:2	./.	./.	./.	./.	./.	./.
chr17	63159202	rs147874330	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,31:30:46:0.674:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	63221214	rs34797451	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,17:29:36:0.472:2	0/1:8,6:32:14:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	63533768	rs1133683	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:29:3:1.00:2	./.	./.	./.	./.
chr17	63533789	rs9915936	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,5:32:5:1.00:2	./.	./.	0/1:1,3:32:4:0.750:2	./.	./.	0/1:0,5:31:5:1.00:2	./.	0/1:5,4:32:9:0.444:2	./.	0/1:0,5:32:5:1.00:2
chr17	63554591	rs2240308	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,10:30:18:0.556:2	./.	0/1:9,8:31:17:0.471:2	0/1:8,4:30:12:0.333:2	0/1:9,12:30:21:0.571:2	./.	./.	./.
chr17	63746805	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2	./.	./.
chr17	63822357	rs62065084	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:105,75:32:180:0.417:2	0/1:88,67:32:155:0.432:2	./.	./.	0/1:97,77:31:174:0.443:2	0/1:100,95:31:195:0.487:2	./.	./.	0/1:109,84:32:193:0.435:2	0/1:95,96:32:191:0.503:2	./.
chr17	64023624	rs17704679	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,20:32:20:1.00:2	0/1:104,88:33:192:0.458:2	0/1:0,106:32:106:1.00:2	./.	0/1:42,36:32:78:0.462:2	0/1:66,72:33:138:0.522:2	0/1:91,101:34:192:0.526:2	./.	./.
chr17	64023642	rs11079628	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:4,121:33:125:0.968:2	0/1:0,85:32:85:1.00:2	./.	0/1:87,80:32:168:0.479:2	./.	0/1:0,157:31:157:1.00:2	0/1:37,34:32:71:0.479:2	0/1:68,60:32:129:0.469:2	0/1:98,74:33:172:0.430:2	0/1:2,138:33:140:0.986:2	0/1:0,144:33:144:1.00:2
chr17	64025331	rs11652766	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,31:30:31:1.00:2	0/1:87,98:30:185:0.530:2	0/1:0,157:30:157:1.00:2	./.	0/1:103,79:29:182:0.434:2	0/1:108,80:30:188:0.426:2	0/1:80,80:31:160:0.500:2	./.	./.
chr17	64049981	rs146009782	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,46:32:104:0.442:2	./.	./.	./.	./.	./.	./.
chr17	64066046	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:31:130:0.031:2	./.	./.	./.	./.	./.
chr17	64208230	rs6933	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,26:31:58:0.448:2	0/1:22,15:30:37:0.405:2	0/1:27,24:30:51:0.471:2	0/1:25,16:30:41:0.390:2	./.	0/1:0,46:32:46:1.00:2	0/1:27,22:32:49:0.449:2	0/1:30,30:31:60:0.500:2
chr17	64210580	rs1801689	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,37:33:109:0.339:2	./.	./.	0/1:83,61:33:144:0.424:2	./.	0/1:70,59:33:129:0.457:2	./.
chr17	64210757	rs4581	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,59:31:126:0.468:2	./.	0/1:57,61:30:118:0.517:2	./.	./.	0/1:73,55:32:128:0.430:2	0/1:55,51:32:106:0.481:2	0/1:74,49:31:123:0.398:2
chr17	64222164	rs1801692	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,67:32:143:0.469:2
chr17	64685078	rs2227857	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,7:31:9:0.778:2	0/1:29,24:30:53:0.453:2	0/1:34,21:31:55:0.382:2	./.	0/1:32,15:30:47:0.319:2	0/1:55,47:30:102:0.461:2	./.	0/1:0,43:30:43:1.00:2	./.
chr17	64783081	rs6504459	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:30:73:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,93:30:93:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,86:29:86:1.00:2	0/1:0,50:31:50:1.00:2	0/1:55,29:31:84:0.345:2	0/1:0,111:31:111:1.00:2	0/1:0,80:30:80:1.00:2	0/1:0,87:32:87:1.00:2
chr17	64785022	rs2228945	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,16:31:31:0.516:2	./.	./.	./.	0/1:18,17:30:35:0.486:2	./.
chr17	64800030	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,26:32:126:0.206:2	./.	./.	./.	./.
chr17	64873531	rs71379998	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,63:32:175:0.360:2	./.	./.	./.
chr17	64873552	rs11652480	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,20:29:20:1.00:2	./.	./.	./.	0/1:101,68:30:169:0.402:2	0/1:116,64:29:180:0.356:2	./.	./.	./.
chr17	64881075	rs2286678	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,73:28:74:0.986:2	0/1:1,35:30:36:0.972:2	0/1:0,8:31:8:1.00:2	./.	0/1:42,37:29:79:0.468:2	./.	0/1:58,37:29:95:0.389:2	0/1:36,51:29:87:0.586:2	./.	0/1:40,20:29:60:0.333:2	0/1:0,75:29:75:1.00:2
chr17	64961111	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:29:99:0.040:2	./.	./.	./.
chr17	65026886	rs11649752	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,33:32:60:0.550:2	./.	./.
chr17	65040930	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,7:33:45:0.156:2	./.	./.	./.	./.	./.
chr17	65052304	rs1799938	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:60,55:32:115:0.478:2	0/1:25,32:32:57:0.561:2	./.	0/1:94,77:32:171:0.450:2	./.	./.	./.	0/1:91,87:32:178:0.489:2	./.	./.	./.
chr17	65104666	rs11657929	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,54:29:55:0.982:2	0/1:0,32:29:32:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,68:30:68:1.00:2	0/1:69,43:30:112:0.384:2	./.	0/1:1,96:29:97:0.990:2	0/1:44,50:28:94:0.532:2	./.	0/1:41,26:30:67:0.388:2	0/1:42,29:29:71:0.408:2
chr17	65104743	rs11653020	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:31:48:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,142:30:142:1.00:2	0/1:0,105:31:105:1.00:2	0/1:0,124:31:124:1.00:2	0/1:0,104:31:104:1.00:2	0/1:51,46:32:97:0.474:2	0/1:1,68:31:69:0.986:2	0/1:0,62:31:62:1.00:2
chr17	65110436	rs2302158	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:55,42:29:97:0.433:2	0/1:26,19:29:45:0.422:2	./.	0/1:2,79:30:81:0.975:2	./.	./.	./.	./.	./.	0/1:39,51:29:90:0.567:2	./.
chr17	65184567	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:32:131:0.031:2	./.	./.
chr17	65191527	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,3:33:13:0.231:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	65212042	rs8080100	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:106,78:31:184:0.424:2	0/1:64,49:31:113:0.434:2	./.	0/1:13,160:31:173:0.925:2	./.	./.	./.	./.	./.	0/1:113,72:32:185:0.389:2	./.
chr17	65362552	rs11079691	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,4:29:8:0.500:2	0/1:27,19:30:46:0.413:2	./.	0/1:25,28:29:53:0.528:2	0/1:28,28:30:56:0.500:2	0/1:34,39:30:73:0.534:2	0/1:17,10:30:27:0.370:2	0/1:17,8:30:25:0.320:2	0/1:8,18:30:26:0.692:2
chr17	65529011	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:32:131:0.031:2	./.
chr17	65718698	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:32:45:0.089:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	65732093	rs3760227	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,46:30:104:0.442:2	0/1:37,25:30:62:0.403:2	./.	./.	./.	./.	./.	./.	0/1:41,49:31:90:0.544:2	0/1:58,54:30:112:0.482:2	0/1:55,65:30:120:0.542:2
chr17	65739627	rs10127	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,47:29:112:0.420:2	0/1:46,36:29:82:0.439:2	0/1:0,22:29:22:1.00:2	0/1:79,102:30:181:0.564:2	./.	./.	0/1:47,47:30:94:0.500:2	./.	0/1:95,52:29:147:0.354:2	0/1:67,56:29:123:0.455:2	0/1:102,86:28:191:0.457:2
chr17	65822410	rs35711041	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,45:31:98:0.459:2	./.	./.	./.	./.	./.
chr17	65907663	rs9909489	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,32:29:70:0.457:2
chr17	65978343	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,4:32:192:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr17	65988049	rs9891146	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,162:32:167:0.970:2	0/1:2,107:32:109:0.982:2	0/1:0,18:32:18:1.00:2	0/1:7,182:32:189:0.963:2	0/1:105,93:32:198:0.470:2	0/1:2,187:32:189:0.989:2	0/1:5,185:32:190:0.974:2	0/1:3,186:32:189:0.984:2	0/1:4,183:33:187:0.979:2	0/1:3,189:32:192:0.984:2	./.
chr17	65988062	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:183,5:30:189:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr17	65989048	rs200385109	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,111:32:111:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,139:32:139:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,155:31:155:1.00:2	0/1:0,120:32:120:1.00:2	0/1:0,176:32:176:1.00:2	0/1:0,167:33:167:1.00:2	0/1:0,139:31:139:1.00:2	0/1:90,96:32:186:0.516:2
chr17	66033260	rs144559457	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:31:195:0.026:2	./.
chr17	66038264	rs202246339	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,8:32:98:0.082:2	./.	./.	0/1:73,4:31:77:0.052:2
chr17	66038331	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,8:30:120:0.067:2	./.	./.	./.
chr17	66038447	rs139852122	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:30:41:0.098:2	0/1:39,3:33:42:0.071:2	./.	./.	./.	./.
chr17	66038454	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:32:38:0.105:2	./.	./.	./.	./.	./.
chr17	66039350	rs4638	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,75:32:76:0.987:2	0/1:0,40:32:40:1.00:2	0/1:0,19:31:19:1.00:2	0/1:43,45:32:88:0.511:2	0/1:0,61:31:61:1.00:2	0/1:0,51:31:51:1.00:2	0/1:2,68:32:70:0.971:2	0/1:1,55:31:56:0.982:2	0/1:0,78:32:78:1.00:2	0/1:0,69:32:69:1.00:2	./.
chr17	66246416	rs3213690	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:33:50:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,3:33:3:1.00:2	0/1:34,41:33:75:0.547:2	0/1:0,54:32:54:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,46:33:46:1.00:2	./.	./.	0/1:0,52:33:52:1.00:2	0/1:19,20:33:39:0.513:2
chr17	66253019	rs113287202	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,38:31:89:0.427:2
chr17	66253095	rs7105	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	0/1:14,5:34:19:0.263:2	0/1:15,10:31:25:0.400:2	0/1:11,4:31:15:0.267:2	./.	./.	0/1:20,12:33:32:0.375:2	./.
chr17	66265367	rs199555462	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:153,37:29:190:0.195:2	0/1:144,50:29:194:0.258:2	./.	./.	0/1:154,45:29:199:0.226:2	./.	0/1:162,34:28:196:0.173:2	./.	./.	0/1:158,38:29:196:0.194:2	./.
chr17	66267236	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:32:50:0.080:2	./.	./.
chr17	66267650	rs3744307	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,13:33:26:0.500:2	./.	./.	0/1:100,85:32:185:0.459:2	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2
chr17	66267691	rs7222013	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:61,59:32:120:0.492:2	0/1:50,33:32:83:0.398:2	./.	./.	0/1:58,42:31:100:0.420:2	./.	0/1:68,53:32:121:0.438:2	./.	./.	0/1:51,48:32:99:0.485:2	0/1:69,75:32:144:0.521:2
chr17	66268839	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,4:32:100:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr17	66270082	rs35397826	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,20:31:38:0.526:2	./.	./.	./.	./.	./.
chr17	66347766	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:32:94:0.043:2	./.
chr17	66352833	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:31:142:0.028:2	./.	./.
chr17	66364691	rs1558876	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,41:33:43:0.953:2	0/1:0,30:33:30:1.00:2	0/1:1,3:34:4:0.750:2	0/1:36,19:33:55:0.345:2	0/1:43,39:33:82:0.476:2	0/1:0,56:33:56:1.00:2	0/1:58,29:33:87:0.333:2	0/1:40,21:33:61:0.344:2	0/1:26,19:34:45:0.422:2	./.	./.
chr17	66364749	rs1558877	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,60:31:63:0.952:2	0/1:0,43:29:43:1.00:2	0/1:8,4:29:12:0.333:2	0/1:2,79:30:81:0.975:2	0/1:0,96:28:96:1.00:2	0/1:0,68:28:68:1.00:2	0/1:82,40:29:122:0.328:2	0/1:1,82:29:83:0.988:2	0/1:39,40:30:79:0.506:2	./.	0/1:45,30:31:75:0.400:2
chr17	66364804	rs1558878	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,69:29:70:0.986:2	0/1:0,45:29:45:1.00:2	./.	0/1:4,104:30:108:0.963:2	0/1:0,90:29:90:1.00:2	0/1:0,99:29:99:1.00:2	0/1:85,37:30:122:0.303:2	0/1:2,106:30:108:0.981:2	0/1:52,72:31:124:0.581:2	./.	./.
chr17	66366659	rs144503106	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,64:33:123:0.520:2	./.
chr17	66391232	rs7342975	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,74:30:189:0.392:2	./.
chr17	66391276	rs9972951	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,77:30:163:0.472:2	./.	./.	./.
chr17	66416357	rs62000424	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:28,43:31:71:0.606:2	0/1:21,18:31:39:0.462:2	0/1:0,7:29:7:1.00:2	./.	./.	./.	0/1:50,66:31:116:0.569:2	./.	./.	./.	./.
chr17	66425047	rs148269208	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:31:110:0.036:2	./.	./.	./.
chr17	66449122	rs883541	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,59:31:59:1.00:2	0/1:2,45:32:47:0.957:2	0/1:30,29:31:59:0.492:2	./.	0/1:0,22:32:22:1.00:2	0/1:28,30:32:58:0.517:2
chr17	66511627	rs3730349	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,27:32:56:0.482:2	./.	./.	./.	./.	./.
chr17	66526417	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:33:150:0.027:2	./.
chr17	66533655	rs2907373	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,26:27:64:0.406:2	0/1:16,12:29:28:0.429:2	0/1:0,11:28:11:1.00:2	0/1:0,69:28:69:1.00:2	0/1:1,64:27:65:0.985:2	0/1:51,33:29:84:0.393:2	0/1:0,98:28:98:1.00:2	0/1:0,101:28:101:1.00:2	0/1:1,84:29:85:0.988:2	./.	0/1:40,40:28:81:0.500:2
chr17	66538239	rs2302234	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:13,20:31:33:0.606:2	0/1:15,5:32:20:0.250:2	0/1:0,9:30:9:1.00:2	./.	0/1:35,22:31:58:0.386:2	./.	0/1:39,30:30:69:0.435:2	./.	0/1:34,31:31:65:0.477:2	./.	./.
chr17	66539847	rs2286562	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,68:33:164:0.415:2	./.	./.
chr17	66596463	rs986099	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:29:10:0.600:2	./.	0/1:14,29:29:43:0.674:2	./.	./.	./.	0/1:26,23:29:50:0.469:2	./.	./.
chr17	66872802	rs1481	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,58:29:60:0.967:2	0/1:1,49:29:50:0.980:2	./.	0/1:0,72:29:72:1.00:2	0/1:4,72:29:76:0.947:2	0/1:45,52:29:97:0.536:2	0/1:24,37:28:61:0.607:2	0/1:1,86:29:87:0.989:2	0/1:1,78:29:79:0.987:2	0/1:1,64:29:65:0.985:2	0/1:52,37:28:90:0.416:2
chr17	66873743	rs8068987	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,63:31:120:0.525:2	./.	./.	./.	./.	0/1:3,104:32:107:0.972:2	./.	./.
chr17	66878825	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:34:128:0.031:2	./.
chr17	66933236	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,5:27:46:0.109:2	./.	./.	./.	./.	./.
chr17	66981100	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:29:99:0.041:2	./.	./.
chr17	66981109	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:38:99:0.040:2	./.	./.
chr17	66982324	rs142295838	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,29:32:63:0.460:2	./.	./.	./.	./.
chr17	66985992	rs2302294	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,112:33:115:0.974:2	0/1:0,50:32:50:1.00:2	0/1:0,13:32:13:1.00:2	0/1:1,90:33:91:0.989:2	./.	0/1:28,59:32:87:0.678:2	0/1:32,21:32:53:0.396:2	0/1:31,65:32:96:0.677:2	0/1:64,57:33:121:0.471:2	0/1:33,41:32:74:0.554:2	0/1:1,146:33:147:0.993:2
chr17	67004310	rs143208550	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,45:31:75:0.600:2	./.	./.	./.	./.	./.	./.	./.
chr17	67017930	rs17684521	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,16:32:31:0.516:2	./.	./.	./.	./.	./.	./.	./.
chr17	67028260	rs2302291	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,116:32:116:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,120:33:120:1.00:2	./.	0/1:55,47:32:102:0.461:2	0/1:59,43:33:102:0.422:2	0/1:65,49:32:114:0.430:2	0/1:0,105:33:105:1.00:2	0/1:92,47:32:139:0.338:2	0/1:0,129:33:129:1.00:2
chr17	67031457	rs1860447	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:32:102:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,163:31:163:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,141:31:141:1.00:2	0/1:0,98:31:98:1.00:2	0/1:2,161:31:163:0.988:2	0/1:0,168:33:169:1.00:2	0/1:92,46:32:138:0.333:2	0/1:0,151:32:152:1.00:2
chr17	67045466	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:31:161:0.025:2	./.	./.	./.
chr17	67047179	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:32:145:0.028:2	./.
chr17	67081830	rs2302134	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,129:33:129:1.00:2	0/1:0,101:33:101:1.00:2	0/1:0,16:34:16:1.00:2	0/1:74,47:33:121:0.388:2	0/1:1,85:32:86:0.988:2	./.	0/1:0,90:33:90:1.00:2	0/1:5,126:33:131:0.962:2	0/1:3,140:34:143:0.979:2	0/1:81,54:33:135:0.400:2	0/1:0,117:33:117:1.00:2
chr17	67101718	rs7212506	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:32:43:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,5:28:5:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,39:30:39:1.00:2	0/1:1,18:30:19:0.947:2	0/1:0,37:30:37:1.00:2	0/1:0,49:31:49:1.00:2	0/1:24,17:31:41:0.415:2	0/1:1,67:31:68:0.985:2
chr17	67107019	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:33:58:0.069:2	./.	./.	./.	./.	./.
chr17	67108362	rs9282553	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,14:33:39:0.359:2	./.
chr17	67109833	rs9282554	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,57:31:142:0.401:2	./.
chr17	67125840	rs4968839	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,184:33:184:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,29:32:29:1.00:2	0/1:90,98:32:189:0.521:2	0/1:0,104:32:104:1.00:2	./.	0/1:1,147:32:148:0.993:2	0/1:3,178:32:181:0.983:2	0/1:0,166:33:166:1.00:2	0/1:3,165:32:168:0.982:2	0/1:3,161:33:164:0.982:2
chr17	67145241	rs75706760	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,34:32:71:0.479:2	./.
chr17	67149972	rs72852601	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,45:33:99:0.455:2	./.	./.	./.	./.	./.	./.	./.
chr17	67149973	rs10491178	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,50:32:92:0.543:2	./.
chr17	67150020	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,6:32:157:0.038:2	./.	./.	./.	./.	./.
chr17	67150118	rs16973656	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:158,5:31:163:0.031:2	./.	./.	./.	./.	0/1:56,56:32:112:0.500:2	./.
chr17	67150430	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,6:32:113:0.053:2	./.	./.	./.
chr17	67151207	rs72853603	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,51:31:127:0.402:2	0/1:33,25:30:59:0.431:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,75:31:182:0.417:2
chr17	67152059	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,4:32:53:0.075:2	./.	./.	./.	./.	./.	./.	./.
chr17	67152996	rs200842733	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,6:33:186:0.032:2	./.	./.	./.
chr17	67171588	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:33:168:0.024:2	./.	./.
chr17	67178316	rs4968849	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:28:57:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,12:26:12:1.00:2	0/1:43,45:30:88:0.511:2	0/1:0,42:29:42:1.00:2	./.	0/1:1,44:30:45:0.978:2	0/1:0,50:29:50:1.00:2	0/1:0,69:29:69:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,106:29:106:1.00:2
chr17	67210992	rs11657804	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,18:32:18:1.00:2	0/1:0,6:32:6:1.00:2	./.	0/1:6,7:32:13:0.538:2	0/1:0,15:31:15:1.00:2	./.	0/1:0,8:33:8:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,21:33:21:1.00:2	./.	0/1:7,9:31:16:0.563:2
chr17	67212031	rs11077414	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,104:33:105:1.00:2	0/1:0,75:33:75:1.00:2	0/1:1,12:32:13:0.923:2	0/1:46,62:32:108:0.574:2	0/1:1,63:33:64:0.984:2	./.	0/1:0,69:32:69:1.00:2	0/1:0,116:32:116:1.00:2	0/1:0,113:33:113:1.00:2	0/1:35,49:32:84:0.583:2	0/1:1,157:33:158:0.994:2
chr17	67212423	rs9909216	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,117:33:118:0.992:2	0/1:0,77:33:77:1.00:2	0/1:0,7:32:7:1.00:2	0/1:49,33:32:82:0.402:2	0/1:0,65:32:65:1.00:2	./.	0/1:0,75:32:75:1.00:2	0/1:0,103:31:103:1.00:2	0/1:0,122:33:122:1.00:2	0/1:55,45:33:100:0.450:2	0/1:0,88:33:88:1.00:2
chr17	67215712	rs12941264	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:31:41:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,12:31:12:1.00:2	0/1:28,31:30:59:0.525:2	0/1:0,37:30:38:1.00:2	./.	0/1:0,26:30:26:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,47:32:47:1.00:2	0/1:21,24:31:45:0.533:2	0/1:0,70:31:70:1.00:2
chr17	67249922	rs9909726	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,2:33:4:0.500:2	0/1:18,18:33:36:0.500:2	./.	0/1:24,10:31:34:0.294:2	./.	0/1:20,16:33:36:0.444:2	0/1:31,23:34:54:0.426:2	0/1:31,5:33:36:0.139:2	0/1:37,28:34:65:0.431:2
chr17	67257281	rs78349182	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,30:31:89:0.337:2	./.	./.	./.	./.	0/1:58,42:32:100:0.420:2	./.	./.
chr17	67260926	rs12449649	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,103:33:104:0.990:2	0/1:1,68:32:69:0.986:2	./.	0/1:57,54:33:111:0.486:2	0/1:37,32:32:69:0.464:2	./.	0/1:1,63:33:64:0.984:2	0/1:75,45:32:120:0.375:2	0/1:61,67:33:128:0.523:2	./.	0/1:47,73:33:120:0.608:2
chr17	67267317	rs557491	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:32:8:0.375:2	0/1:42,44:32:86:0.512:2	./.	0/1:0,68:32:68:1.00:2	./.	0/1:43,54:32:97:0.557:2	0/1:41,30:33:71:0.423:2	0/1:0,67:32:67:1.00:2	0/1:45,36:33:82:0.444:2
chr17	67273882	rs536009	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,71:32:71:1.00:2	0/1:0,59:32:59:1.00:2	./.	0/1:51,41:31:92:0.446:2	0/1:0,50:31:50:1.00:2	0/1:60,29:31:89:0.326:2	0/1:0,51:32:51:1.00:2	0/1:36,35:31:71:0.493:2	0/1:69,49:31:118:0.415:2	0/1:45,30:31:75:0.400:2	0/1:62,39:32:101:0.386:2
chr17	67290840	rs17686569	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,10:30:17:0.588:2	./.	0/1:12,13:29:25:0.520:2	./.	0/1:18,11:30:29:0.379:2	0/1:16,17:29:33:0.515:2	0/1:11,7:30:18:0.389:2	0/1:23,10:26:33:0.303:2
chr17	67304447	rs11544715	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,16:32:22:0.727:2	./.	0/1:13,16:31:29:0.552:2	./.	0/1:11,21:32:32:0.656:2	0/1:20,21:33:41:0.512:2	0/1:10,4:33:14:0.286:2	0/1:6,27:29:33:0.818:2
chr17	67513003	rs1133228	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,139:32:142:0.979:2	0/1:0,81:32:81:1.00:2	0/1:14,10:30:24:0.417:2	0/1:96,73:32:169:0.432:2	0/1:64,25:32:89:0.281:2	0/1:3,140:31:143:0.979:2	0/1:60,47:32:107:0.439:2	0/1:71,73:32:144:0.507:2	0/1:94,79:33:173:0.457:2	0/1:0,133:32:133:1.00:2	./.
chr17	67513055	rs2251855	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,106:32:108:0.981:2	0/1:0,52:32:52:1.00:2	0/1:6,4:32:10:0.400:2	0/1:43,33:32:76:0.434:2	0/1:31,22:32:53:0.415:2	0/1:1,97:31:98:0.990:2	0/1:41,22:32:63:0.349:2	0/1:38,38:32:76:0.500:2	0/1:43,57:33:100:0.570:2	0/1:0,74:32:74:1.00:2	./.
chr17	68128447	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,31:30:66:0.470:2	./.	./.	./.	./.
chr17	68131048	rs3826428	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,6:33:23:0.261:2	./.	0/1:11,13:32:24:0.542:2	./.
chr17	68131062	rs184702083	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,13:32:23:0.565:2
chr17	68131526	rs6788	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,88:33:196:0.449:2	./.	./.	./.
chr17	68172326	rs173135	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,22:31:40:0.550:2	./.
chr17	68172543	rs55970278	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,26:31:73:0.356:2	./.	./.	./.	./.	./.	./.	./.
chr17	68172823	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,3:33:45:0.068:2	./.
chr17	68173533	rs45603434	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:110,72:33:182:0.396:2	0/1:46,28:33:74:0.378:2	./.	./.	0/1:84,54:32:138:0.391:2	./.	./.	0/1:110,56:33:166:0.337:2	./.	./.	0/1:138,59:33:197:0.299:2
chr17	68173731	rs236514	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,43:29:94:0.457:2	./.	0/1:62,59:30:121:0.488:2	./.	./.	0/1:41,49:30:91:0.544:2	0/1:0,70:29:70:1.00:2	./.
chr17	70118935	rs2229989	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,81:29:180:0.450:2	./.	./.	./.	0/1:91,52:29:143:0.364:2	./.
chr17	70645032	rs61736066	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,8:30:31:0.258:2	0/1:8,11:31:19:0.579:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	70645365	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,4:32:39:0.103:2	./.
chr17	70943990	rs2466517	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:31:37:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,55:32:55:1.00:2	0/1:2,36:33:38:0.947:2	0/1:0,59:32:59:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,55:31:55:1.00:2
chr17	71084844	rs146208211	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,29:31:64:0.453:2	./.	./.	./.
chr17	71084898	rs148439735	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,29:32:57:0.509:2	./.	./.	./.	./.
chr17	71166701	rs7220818	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,36:31:62:0.581:2	./.	0/1:0,29:31:29:1.00:2	0/1:17,15:33:32:0.469:2
chr17	71167102	rs7210080	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,19:27:39:0.487:2	./.	0/1:21,29:28:50:0.580:2	0/1:40,17:28:57:0.298:2
chr17	71167133	rs7210093	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,16:33:36:0.444:2	./.	0/1:0,32:32:32:1.00:2	0/1:31,15:31:46:0.326:2
chr17	71167541	rs7224362	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,4:33:17:0.235:2	./.	0/1:1,20:31:21:0.952:2	0/1:26,15:32:41:0.366:2
chr17	71167755	rs12936744	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,13:32:29:0.448:2
chr17	71192663	rs1052706	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:22,17:33:39:0.436:2	0/1:10,3:33:13:0.231:2	./.	0/1:22,19:33:41:0.463:2	./.	0/1:36,39:31:75:0.520:2	./.	0/1:24,27:32:51:0.529:2	0/1:0,37:33:37:1.00:2	0/1:33,12:32:45:0.267:2	./.
chr17	71192873	rs11544800	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:9,16:28:25:0.640:2	0/1:9,7:30:16:0.438:2	./.	0/1:8,8:27:16:0.500:2	./.	0/1:17,10:27:27:0.370:2	./.	0/1:13,13:26:26:0.500:2	0/1:0,25:28:25:1.00:2	0/1:9,12:27:21:0.571:2	./.
chr17	71196809	rs1026128	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:27,40:31:67:0.597:2	0/1:34,23:30:57:0.404:2	./.	0/1:40,22:32:62:0.355:2	./.	0/1:39,35:31:74:0.473:2	./.	0/1:38,37:31:75:0.493:2	0/1:0,55:32:55:1.00:2	0/1:0,50:32:50:1.00:2	./.
chr17	71197323	rs62621249	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,29:32:49:0.592:2	./.	./.	0/1:65,37:32:103:0.363:2	./.	./.	./.
chr17	71197439	rs1551036	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,46:31:88:0.523:2	./.	./.	./.	./.	./.	./.	./.
chr17	71197748	rs1037256	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:23,19:33:42:0.452:2	0/1:15,11:32:26:0.423:2	./.	0/1:28,27:32:55:0.491:2	./.	0/1:16,29:32:45:0.644:2	0/1:82,3:35:85:0.035:2	0/1:36,34:32:70:0.486:2	0/1:0,30:33:30:1.00:2	0/1:0,35:32:35:1.00:2	./.
chr17	71205854	rs8387	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:33:6:0.667:2	./.	./.	0/1:5,5:31:10:0.500:2	0/1:5,10:32:15:0.667:2	./.	./.	./.	0/1:0,7:32:7:1.00:2	./.
chr17	71232382	rs201749578	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,4:33:73:0.055:2	./.	./.	./.	./.	./.	./.	./.
chr17	71232687	rs745143	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:30,27:33:57:0.474:2	0/1:13,12:32:25:0.480:2	./.	0/1:38,34:33:72:0.472:2	./.	0/1:38,24:31:62:0.387:2	0/1:30,32:33:62:0.516:2	0/1:45,38:33:83:0.458:2	0/1:0,68:33:68:1.00:2	0/1:0,48:32:48:1.00:2	./.
chr17	71232804	rs904384	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,47:31:47:1.00:2	0/1:0,34:31:34:1.00:2	./.	0/1:0,42:30:42:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,70:31:70:1.00:2
chr17	71232807	rs904383	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:25,25:30:50:0.500:2	0/1:16,19:31:35:0.543:2	./.	0/1:27,18:30:45:0.400:2	./.	0/1:25,14:29:39:0.359:2	0/1:17,16:31:33:0.485:2	0/1:25,16:29:41:0.390:2	0/1:0,41:31:41:1.00:2	0/1:0,24:29:24:1.00:2	./.
chr17	71232881	rs745142	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:22,34:32:56:0.607:2	0/1:18,23:33:41:0.561:2	./.	0/1:39,48:32:87:0.552:2	./.	0/1:51,38:32:89:0.427:2	0/1:50,55:33:105:0.524:2	0/1:55,58:32:113:0.513:2	0/1:0,75:33:75:1.00:2	0/1:0,74:32:74:1.00:2	./.
chr17	71232990	rs61729639	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,28:30:69:0.406:2	./.	./.	./.	./.	./.	./.	./.
chr17	71233130	rs11869253	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:6,3:32:9:0.333:2	0/1:1,2:33:3:0.667:2	./.	0/1:5,3:33:8:0.375:2	./.	0/1:8,6:33:14:0.429:2	./.	0/1:8,7:32:15:0.467:2	0/1:1,4:33:5:0.800:2	0/1:0,5:32:5:1.00:2	./.
chr17	71238433	rs1566286	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:23,26:30:49:0.531:2	0/1:18,14:31:32:0.438:2	./.	0/1:40,32:29:72:0.444:2	./.	0/1:32,33:29:65:0.508:2	0/1:23,20:29:43:0.465:2	0/1:34,32:30:66:0.485:2	0/1:0,78:30:78:1.00:2	0/1:0,45:30:45:1.00:2	./.
chr17	71239087	rs1566290	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,40:32:93:0.430:2	0/1:26,14:32:40:0.350:2	0/1:4,6:31:10:0.600:2	0/1:54,61:31:115:0.530:2	0/1:1,119:31:120:0.992:2	0/1:63,56:31:119:0.471:2	0/1:81,55:31:136:0.404:2	0/1:66,50:30:116:0.431:2	./.	./.	0/1:53,40:30:93:0.430:2
chr17	71241279	rs74822881	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	0/1:42,35:31:77:0.455:2	./.	./.	0/1:71,47:31:118:0.398:2	./.	./.	0/1:63,50:30:113:0.442:2
chr17	71244630	rs8915	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:32:82:1.00:2	0/1:0,35:32:35:1.00:2	0/1:4,3:32:7:0.429:2	0/1:0,84:31:84:1.00:2	0/1:41,47:32:88:0.534:2	0/1:0,69:31:69:1.00:2	0/1:0,84:32:84:1.00:2	0/1:49,45:32:94:0.479:2	0/1:0,83:32:83:1.00:2	0/1:0,75:32:75:1.00:2	0/1:48,21:32:69:0.304:2
chr17	71244702	rs12885	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,33:31:69:0.478:2	0/1:17,14:32:31:0.452:2	0/1:10,8:30:18:0.444:2	0/1:41,34:30:75:0.453:2	0/1:42,26:30:68:0.382:2	./.	./.	./.	./.	./.	./.
chr17	71247236	rs9895593	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,9:32:30:0.300:2	./.
chr17	71281905	rs373678950	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,28:31:49:0.571:2	./.	./.	./.	./.	./.
chr17	71346513	rs35317925	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,36:31:84:0.429:2	./.	./.	0/1:34,46:32:80:0.575:2	./.	./.
chr17	71365314	rs867998	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,11:30:27:0.407:2	0/1:5,8:30:13:0.615:2	0/1:0,5:31:5:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,38:29:38:1.00:2	0/1:26,13:28:39:0.333:2	0/1:0,50:29:50:1.00:2	0/1:25,18:30:43:0.419:2	0/1:27,18:31:45:0.400:2	0/1:0,36:30:36:1.00:2	./.
chr17	71377042	rs80234264	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:31:15:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	71380062	rs35467001	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,72:31:151:0.477:2	0/1:86,60:32:146:0.411:2	0/1:55,33:32:88:0.375:2	./.
chr17	71384010	rs35928335	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,50:30:125:0.400:2	0/1:35,39:32:74:0.527:2	0/1:26,40:32:66:0.606:2	./.
chr17	71386577	rs61752521	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,9:32:24:0.375:2	0/1:92,91:31:183:0.497:2	0/1:84,105:32:189:0.556:2	./.	./.	./.	./.	0/1:51,62:32:113:0.549:2	0/1:66,79:33:145:0.545:2
chr17	71389826	rs34322745	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,44:30:77:0.571:2	0/1:38,25:32:63:0.397:2	0/1:26,17:31:43:0.395:2	./.
chr17	71390366	rs904381	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:10,10:32:20:0.500:2	0/1:10,8:31:18:0.444:2	0/1:0,7:30:7:1.00:2	./.	0/1:21,12:30:33:0.364:2	0/1:1,26:30:27:0.963:2	0/1:8,17:31:25:0.680:2	0/1:10,14:32:24:0.583:2	./.	./.	0/1:13,8:32:21:0.381:2
chr17	71398170	rs9302962	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:26,39:30:66:0.600:2	0/1:20,7:30:27:0.259:2	0/1:2,5:31:7:0.714:2	./.	0/1:48,50:31:98:0.510:2	0/1:41,52:30:93:0.559:2	./.	0/1:54,43:31:97:0.443:2	./.	./.	0/1:39,30:31:69:0.435:2
chr17	71410789	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:114,4:32:118:0.034:2	./.	./.	./.	./.	./.	./.
chr17	71410891	rs12386051	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,13:32:43:0.302:2	0/1:10,13:32:23:0.565:2	0/1:1,2:32:3:0.667:2	0/1:36,21:29:57:0.368:2	./.	./.	./.	0/1:37,36:31:73:0.493:2	0/1:52,23:32:75:0.307:2	0/1:23,32:32:55:0.582:2	0/1:31,30:32:61:0.492:2
chr17	71426656	rs1105353	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:31:7:0.571:2	0/1:27,18:30:45:0.400:2	./.	./.	./.	0/1:2,54:31:56:0.964:2	./.	0/1:30,14:31:44:0.318:2	0/1:18,19:32:37:0.514:2
chr17	71426670	rs1105354	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:32:5:0.600:2	0/1:27,18:28:45:0.400:2	./.	./.	./.	0/1:2,63:30:65:0.969:2	./.	0/1:33,14:30:47:0.298:2	0/1:19,17:32:36:0.472:2
chr17	71468267	rs12452761	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,13:27:34:0.382:2	./.	./.	./.	./.	0/1:18,13:31:31:0.419:2	./.	0/1:12,13:31:25:0.520:2
chr17	71468313	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,16:32:43:0.372:2	./.
chr17	71503636	rs9895895	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,35:30:78:0.449:2	0/1:26,20:29:46:0.435:2	0/1:10,4:30:14:0.286:2	0/1:71,68:31:139:0.489:2	0/1:65,52:29:117:0.444:2	0/1:71,64:30:135:0.474:2	0/1:82,61:30:143:0.427:2	0/1:70,57:29:127:0.449:2	0/1:0,104:30:104:1.00:2	./.	0/1:52,32:31:84:0.381:2
chr17	72205979	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,39:32:75:0.520:2	./.	./.
chr17	72209795	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:30:52:0.077:2	./.	./.
chr17	72233478	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:32:12:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	72233559	rs62621376	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,41:31:82:0.500:2	0/1:55,26:30:81:0.321:2	0/1:51,34:30:85:0.400:2	./.	./.	0/1:40,34:32:74:0.459:2	./.	0/1:39,21:31:60:0.350:2
chr17	72240168	rs35682745	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:32:8:0.375:2	0/1:30,28:31:58:0.483:2	0/1:33,24:32:57:0.421:2	./.	./.	0/1:37,16:31:53:0.302:2	./.	./.	./.
chr17	72240177	rs35999669	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,28:30:59:0.475:2	0/1:0,49:30:49:1.00:2	0/1:37,30:31:67:0.448:2	./.	0/1:34,16:29:50:0.320:2	0/1:15,25:30:40:0.625:2	./.	0/1:17,20:29:37:0.541:2
chr17	72246101	rs3897753	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,7:33:16:0.438:2	0/1:42,69:33:111:0.622:2	0/1:2,171:32:173:0.988:2	0/1:80,64:31:146:0.444:2	./.	0/1:121,75:32:196:0.383:2	0/1:56,63:32:119:0.529:2	0/1:53,50:32:103:0.485:2	0/1:36,51:32:87:0.586:2
chr17	72246466	rs7224615	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,6:32:17:0.353:2	0/1:73,87:32:160:0.544:2	0/1:2,187:32:189:0.989:2	0/1:70,54:32:124:0.435:2	./.	0/1:115,62:32:177:0.350:2	0/1:61,83:34:144:0.576:2	0/1:53,61:33:114:0.535:2	0/1:49,58:32:107:0.542:2
chr17	72248482	rs372693326	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,18:30:41:0.439:2	./.	./.	./.	./.	./.	0/1:27,18:32:45:0.400:2
chr17	72248483	rs4789640	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,14:32:40:0.350:2	0/1:3,38:31:41:0.927:2	0/1:28,21:30:49:0.429:2	./.	0/1:35,32:30:67:0.478:2	0/1:32,19:31:51:0.373:2	0/1:28,22:30:50:0.440:2	0/1:28,18:32:46:0.391:2
chr17	72248512	rs12600564	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,25:29:49:0.510:2	./.	./.	./.
chr17	72249229	rs9899862	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,55:31:55:1.00:2	0/1:32,26:31:58:0.448:2	./.	./.	0/1:23,35:33:58:0.603:2	0/1:30,23:32:53:0.434:2	0/1:40,19:32:59:0.322:2
chr17	72278118	rs199562768	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,6:31:115:0.053:2	./.	./.	./.	./.	./.	./.
chr17	72295966	rs34159194	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,17:32:27:0.630:2	./.	./.	0/1:26,39:33:66:0.600:2	./.	./.	0/1:14,17:29:31:0.548:2
chr17	72301410	rs138489039	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,20:32:39:0.513:2	0/1:8,7:32:15:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	72301432	rs8073660	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:25,18:33:43:0.419:2	0/1:11,11:33:22:0.500:2	0/1:0,8:31:8:1.00:2	./.	./.	0/1:37,24:31:61:0.393:2	0/1:0,73:33:73:1.00:2	0/1:26,33:32:59:0.559:2	./.	./.	0/1:34,14:31:48:0.292:2
chr17	72306291	rs28725418	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,21:30:45:0.467:2	./.	./.	./.	./.	./.	./.
chr17	72308291	rs9908476	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,79:32:147:0.537:2	./.	./.	./.	./.	./.	./.
chr17	72308319	rs1979370	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:32:53:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,63:31:63:1.00:2	0/1:52,45:31:97:0.464:2	0/1:1,84:30:85:0.988:2	0/1:0,113:31:113:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,82:31:82:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,50:31:50:1.00:2
chr17	72338765	rs12601559	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,32:31:73:0.438:2	./.	0/1:39,33:31:72:0.458:2	0/1:44,35:31:79:0.443:2	0/1:47,29:32:76:0.382:2	0/1:42,40:32:82:0.488:2	0/1:24,30:32:54:0.556:2	./.
chr17	72346855	rs11077744	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,31:28:58:0.534:2	0/1:24,12:29:36:0.333:2	./.	0/1:0,90:30:90:1.00:2	0/1:46,44:30:90:0.489:2	0/1:1,99:30:100:0.990:2	0/1:39,38:31:77:0.494:2	0/1:0,80:29:80:1.00:2	0/1:0,76:31:76:1.00:2	0/1:0,69:30:69:1.00:2	0/1:0,65:29:65:1.00:2
chr17	72346868	rs2382644	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,63:32:126:0.500:2	0/1:46,48:32:94:0.511:2	./.	./.	./.	./.
chr17	72346918	rs73995260	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,55:31:126:0.437:2	./.	./.	./.	./.
chr17	72349040	rs9897137	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:14,17:30:31:0.548:2	0/1:8,11:31:19:0.579:2	0/1:0,4:31:4:1.00:2	./.	0/1:17,8:32:25:0.320:2	./.	0/1:37,19:31:56:0.339:2	./.	./.	0/1:18,26:31:44:0.591:2	./.
chr17	72349067	rs2280108	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,13:31:27:0.481:2	0/1:11,7:32:18:0.389:2	./.	0/1:20,20:31:40:0.500:2	0/1:8,13:31:21:0.619:2	0/1:18,13:31:31:0.419:2	./.	0/1:14,14:32:28:0.500:2	0/1:22,6:32:28:0.214:2	./.	0/1:0,28:31:28:1.00:2
chr17	72349656	rs72852210	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,17:28:48:0.354:2	./.	./.	./.	./.	./.	./.	./.
chr17	72350362	rs72852235	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,5:29:16:0.313:2	./.	0/1:11,11:30:22:0.500:2	0/1:8,10:30:18:0.556:2	0/1:14,17:30:31:0.548:2	0/1:3,6:32:9:0.667:2	./.	./.
chr17	72350402	rs2271534	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.
chr17	72350412	rs2271535	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.
chr17	72350531	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	72351024	rs9891620	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:17,31:30:48:0.646:2	0/1:20,16:30:36:0.444:2	0/1:0,13:29:13:1.00:2	./.	0/1:56,44:31:100:0.440:2	./.	./.	./.	./.	0/1:34,16:30:50:0.320:2	./.
chr17	72351406	rs2271536	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:28:5:0.800:2	0/1:15,12:31:27:0.444:2	./.	0/1:12,11:31:23:0.478:2	0/1:14,12:31:26:0.462:2	0/1:12,14:31:26:0.538:2	0/1:11,21:33:32:0.656:2	0/1:0,11:31:11:1.00:2	./.
chr17	72353745	rs11547807	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:33:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:29:4:0.750:2	./.
chr17	72366695	rs2382647	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:31:35:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,68:31:68:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,82:31:82:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,51:31:51:1.00:2
chr17	72368550	rs11658891	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,38:31:82:0.463:2	0/1:25,19:32:44:0.432:2	0/1:0,8:33:8:1.00:2	0/1:46,36:32:82:0.439:2	0/1:83,70:32:153:0.458:2	0/1:1,107:32:108:0.991:2	0/1:68,51:33:119:0.429:2	0/1:145,4:33:149:0.027:2	0/1:0,87:33:87:1.00:2	0/1:0,80:33:80:1.00:2	0/1:37,38:32:75:0.507:2
chr17	72429927	rs1320038	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,9:32:20:0.450:2	./.	./.	./.	0/1:72,66:30:138:0.478:2	./.	./.	./.	./.
chr17	72469958	rs1127737	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,50:30:113:0.442:2	0/1:44,22:30:66:0.333:2	0/1:8,15:30:23:0.652:2	0/1:95,85:29:180:0.472:2	0/1:85,70:30:155:0.452:2	0/1:101,68:30:169:0.402:2	0/1:3,160:29:163:0.982:2	0/1:1,175:29:176:0.994:2	./.	0/1:81,78:31:159:0.491:2	./.
chr17	72469966	rs2272111	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:63,43:31:106:0.406:2	0/1:46,21:31:67:0.313:2	./.	./.	0/1:78,61:31:139:0.439:2	0/1:100,58:31:158:0.367:2	0/1:98,57:31:155:0.368:2	./.	./.	0/1:71,70:31:141:0.496:2	./.
chr17	72519798	rs1472726	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,102:30:104:0.981:2	0/1:2,47:30:49:0.959:2	0/1:0,21:29:21:1.00:2	0/1:83,74:29:157:0.471:2	0/1:1,183:29:184:0.995:2	0/1:72,88:29:160:0.550:2	0/1:106,77:29:183:0.421:2	./.	0/1:73,92:29:165:0.558:2	0/1:75,75:30:150:0.500:2	0/1:84,79:30:163:0.485:2
chr17	72521897	rs17553512	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,78:32:80:0.975:2	0/1:0,45:32:45:1.00:2	0/1:0,14:32:14:1.00:2	0/1:64,52:32:116:0.448:2	0/1:1,62:32:63:0.984:2	0/1:69,50:31:119:0.420:2	0/1:54,33:32:87:0.379:2	./.	0/1:65,51:33:116:0.440:2	0/1:76,56:33:132:0.424:2	0/1:51,56:32:107:0.523:2
chr17	72540778	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,7:27:196:0.036:2	./.	./.	./.	./.
chr17	72540911	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:29:194:0.026:2	./.	./.	./.
chr17	72540957	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,6:29:171:0.035:2	./.	./.	./.	./.	./.
chr17	72541052	rs2292107	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,17:31:37:0.459:2	0/1:16,9:32:25:0.360:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,55:32:56:0.982:2
chr17	72578386	rs77765423	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,55:30:127:0.433:2	./.
chr17	72584764	rs783239	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,94:31:191:0.492:2	./.	./.	./.	0/1:81,90:32:171:0.526:2	0/1:83,94:32:177:0.531:2
chr17	72588326	rs493430	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:49,38:32:87:0.437:2	0/1:22,23:32:45:0.511:2	0/1:7,5:33:12:0.417:2	./.	0/1:0,108:32:108:1.00:2	0/1:1,83:32:84:0.988:2	0/1:0,65:32:65:1.00:2	0/1:0,83:33:83:1.00:2	0/1:0,80:33:80:1.00:2	0/1:39,44:33:83:0.530:2	0/1:31,32:31:63:0.508:2
chr17	72588806	rs545652	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,36:31:97:0.371:2	./.	./.	./.	0/1:42,32:32:74:0.432:2	0/1:43,50:30:93:0.538:2
chr17	72589114	rs7208696	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,49:31:90:0.544:2	./.	./.	./.	0/1:35,40:31:75:0.533:2	0/1:56,66:31:122:0.541:2
chr17	72589196	rs12941999	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:78,48:33:126:0.381:2	0/1:42,38:33:80:0.475:2	0/1:3,4:32:7:0.571:2	./.	0/1:1,68:32:69:0.986:2	0/1:48,56:32:104:0.538:2	0/1:1,57:33:58:0.983:2	0/1:5,109:32:114:0.956:2	0/1:0,138:33:138:1.00:2	./.	./.
chr17	72589264	rs12949223	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,41:32:94:0.436:2	0/1:24,26:32:50:0.520:2	0/1:1,4:32:5:0.800:2	0/1:92,4:31:96:0.042:2	0/1:0,60:31:60:1.00:2	0/1:41,37:31:78:0.474:2	0/1:0,48:31:48:1.00:2	0/1:1,61:31:62:0.984:2	0/1:1,78:32:79:0.987:2	./.	./.
chr17	72589435	rs524536	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,75:32:187:0.401:2	0/1:195,5:33:200:0.025:2	./.	./.	0/1:103,78:32:181:0.431:2	0/1:95,84:33:179:0.469:2
chr17	72590215	rs140675781	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,8:32:19:0.421:2	./.	0/1:24,8:33:32:0.250:2	./.	./.
chr17	72590267	rs553781	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,13:32:31:0.419:2	0/1:17,6:31:23:0.261:2	./.	./.	0/1:0,34:31:34:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,40:33:40:1.00:2	0/1:30,18:30:48:0.375:2	0/1:29,18:32:47:0.383:2
chr17	72608834	rs579238	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,4:32:13:0.308:2	0/1:2,4:28:7:0.667:2	./.	./.	0/1:18,8:31:26:0.308:2	0/1:17,6:32:23:0.261:2	0/1:7,12:31:19:0.632:2	0/1:12,6:31:18:0.333:2	0/1:10,4:31:14:0.286:2	./.	./.
chr17	72608876	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,4:30:25:0.160:2	./.	./.	./.	./.	./.
chr17	72610089	rs1878061	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:61,37:32:98:0.378:2	0/1:21,30:32:51:0.588:2	0/1:5,4:32:9:0.444:2	./.	0/1:60,63:32:123:0.512:2	0/1:65,64:32:129:0.496:2	0/1:78,55:33:133:0.414:2	0/1:76,57:32:133:0.429:2	0/1:59,63:33:122:0.516:2	./.	./.
chr17	72613589	rs581157	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,18:30:39:0.462:2	0/1:10,5:31:15:0.333:2	./.	0/1:13,18:31:32:0.581:2	0/1:8,18:30:26:0.692:2	0/1:15,20:31:35:0.571:2	0/1:10,16:30:26:0.615:2	0/1:15,16:31:31:0.516:2	0/1:11,10:32:21:0.476:2	./.	0/1:26,19:31:45:0.422:2
chr17	72615293	rs12950039	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,18:32:31:0.581:2	0/1:6,8:33:14:0.571:2	0/1:9,3:30:12:0.250:2	0/1:14,14:33:28:0.500:2	0/1:14,17:32:31:0.548:2	0/1:15,12:32:27:0.444:2	0/1:13,9:32:22:0.409:2	0/1:15,18:31:33:0.545:2	0/1:20,22:33:42:0.524:2	./.	0/1:14,8:29:22:0.364:2
chr17	72619795	rs41458047	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:32:136:0.029:2	./.	./.	./.
chr17	72691247	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:29:88:0.045:2	./.	./.	./.	./.	./.
chr17	72691928	rs2034310	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:30:68:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,81:30:81:1.00:2	0/1:1,135:28:136:0.993:2	./.	0/1:0,111:30:111:1.00:2	0/1:72,71:29:143:0.497:2	0/1:64,50:31:114:0.439:2	0/1:0,81:30:81:1.00:2	0/1:1,76:29:77:0.987:2
chr17	72700943	rs35489971	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:32:92:1.00:2	0/1:2,58:32:60:0.967:2	0/1:0,15:32:15:1.00:2	0/1:2,117:33:119:0.983:2	0/1:1,99:32:100:0.990:2	./.	0/1:1,119:32:120:0.992:2	0/1:0,152:32:152:1.00:2	0/1:54,60:33:114:0.526:2	0/1:62,49:31:111:0.441:2	0/1:0,108:32:108:1.00:2
chr17	72769739	rs2305213	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:29:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	72771766	rs4788850	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:29:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	72773478	rs202104975	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,10:14:58:0.172:2	./.	./.	0/1:50,11:14:62:0.180:2
chr17	72784932	rs2016126	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,20:32:20:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,3:32:3:1.00:2	./.	0/1:0,20:31:20:1.00:2	0/1:19,11:31:30:0.367:2	0/1:12,9:31:21:0.429:2	0/1:0,31:32:31:1.00:2	0/1:15,4:33:19:0.211:2	0/1:0,17:33:17:1.00:2	0/1:0,15:31:15:1.00:2
chr17	72786377	rs117699067	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,17:31:44:0.386:2
chr17	72786386	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:74,4:31:78:0.051:2	./.	./.	./.	./.	./.	./.
chr17	72832418	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:29:82:0.049:2	./.	./.	./.
chr17	72838649	rs3744215	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,40:31:72:0.556:2	./.	0/1:42,54:30:96:0.563:2	0/1:49,72:31:121:0.595:2	./.	0/1:44,66:32:110:0.600:2	0/1:34,31:31:65:0.477:2	./.
chr17	72851133	rs689730	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,3:30:9:0.333:2	0/1:7,3:30:10:0.300:2	./.	0/1:0,11:32:11:1.00:2	0/1:0,3:29:3:1.00:2	0/1:1,3:31:4:0.750:2	0/1:0,8:31:8:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,4:32:4:1.00:2
chr17	72860311	rs144469542	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,32:30:72:0.444:2	./.	./.	./.
chr17	72862593	rs690514	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,34:33:65:0.523:2	./.
chr17	72869078	rs492095	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,11:33:30:0.367:2	./.	0/1:10,10:32:20:0.500:2	./.	./.	./.	./.
chr17	72874510	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:30:104:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	72877212	rs7219093	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,23:32:53:0.434:2	0/1:21,8:29:29:0.276:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	72889676	rs1625113	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,15:27:40:0.375:2	0/1:17,10:28:27:0.370:2	0/1:1,13:29:14:0.929:2	0/1:18,77:29:95:0.811:2	0/1:10,102:27:112:0.911:2	0/1:11,75:29:86:0.872:2	0/1:3,88:28:91:0.967:2	0/1:12,99:28:111:0.892:2	0/1:11,58:30:69:0.841:2	0/1:12,69:28:82:0.852:2	0/1:3,49:28:52:0.942:2
chr17	72889685	rs2683274	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,5:28:38:0.132:2	0/1:22,6:31:28:0.214:2	./.	0/1:81,16:27:97:0.165:2	0/1:104,9:28:113:0.080:2	0/1:83,9:29:92:0.098:2	./.	0/1:99,11:27:110:0.100:2	0/1:60,10:30:70:0.143:2	0/1:71,10:29:82:0.123:2	./.
chr17	72916759	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,4:30:115:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr17	72926660	rs61746106	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,54:31:135:0.400:2	./.	./.	0/1:68,53:30:121:0.438:2	./.	./.	./.	./.
chr17	72927123	rs6501741	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,45:31:91:0.495:2	0/1:22,25:32:47:0.532:2	./.	0/1:0,96:32:96:1.00:2	0/1:1,140:31:141:0.993:2	0/1:0,107:31:107:1.00:2	0/1:1,117:31:118:0.992:2	0/1:3,117:32:120:0.975:2	0/1:50,49:32:99:0.495:2	0/1:52,41:31:93:0.441:2	0/1:0,91:32:91:1.00:2
chr17	72929583	rs150863790	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,29:29:71:0.408:2	./.	./.
chr17	72937605	rs7210616	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,16:32:38:0.421:2	0/1:18,12:32:30:0.400:2	./.	0/1:0,58:32:58:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,42:32:42:1.00:2	0/1:21,10:31:31:0.323:2	0/1:0,23:31:23:1.00:2	0/1:20,20:33:40:0.500:2	0/1:13,19:32:32:0.594:2	0/1:0,37:31:37:1.00:2
chr17	72937851	rs9890664	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,11:27:26:0.440:2	0/1:11,12:31:23:0.522:2	./.	0/1:0,57:28:57:1.00:2	0/1:0,62:29:62:1.00:2	0/1:0,48:29:49:1.00:2	0/1:39,31:30:70:0.443:2	0/1:0,78:30:78:1.00:2	0/1:23,25:31:48:0.521:2	0/1:25,23:30:48:0.479:2	0/1:0,33:29:33:1.00:2
chr17	72938100	rs1542752	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,46:32:80:0.575:2	0/1:29,35:32:64:0.547:2	0/1:17,12:32:29:0.414:2	0/1:0,158:32:158:1.00:2	0/1:0,155:32:155:1.00:2	0/1:0,182:32:182:1.00:2	0/1:0,161:32:161:1.00:2	0/1:1,187:32:188:0.995:2	0/1:85,89:33:174:0.511:2	0/1:82,74:32:157:0.474:2	0/1:0,119:32:119:1.00:2
chr17	72939420	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:32:107:0.038:2	./.	./.
chr17	72939446	rs4789110	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,26:30:62:0.419:2	0/1:24,14:31:38:0.368:2	./.	0/1:0,54:31:54:1.00:2	0/1:39,39:30:78:0.500:2	0/1:1,78:30:79:0.987:2	./.	0/1:2,85:31:87:0.977:2	0/1:50,45:31:95:0.474:2	./.	0/1:73,51:31:124:0.411:2
chr17	72942905	rs141385371	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,28:31:48:0.583:2	./.	./.	./.	./.	./.	./.	./.
chr17	72943126	rs8066909	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,36:31:63:0.571:2	0/1:25,13:32:38:0.342:2	./.	0/1:2,99:31:101:0.980:2	0/1:69,65:32:134:0.485:2	0/1:2,80:31:82:0.976:2	./.	0/1:2,101:32:104:0.981:2	0/1:30,38:33:68:0.559:2	./.	0/1:45,25:32:70:0.357:2
chr17	72948369	rs17853024	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:26:63:1.00:2	0/1:0,44:27:44:1.00:2	0/1:0,16:28:16:1.00:2	0/1:0,111:28:111:1.00:2	0/1:1,181:27:182:0.995:2	0/1:0,125:27:125:1.00:2	0/1:107,89:28:196:0.454:2	0/1:0,160:28:161:1.00:2	0/1:0,133:28:133:1.00:2	0/1:0,92:27:92:1.00:2	0/1:0,108:27:109:1.00:2
chr17	72949146	rs2307010	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:44,32:31:77:0.421:2	0/1:21,21:32:42:0.500:2	0/1:17,9:31:26:0.346:2	./.	0/1:55,71:30:127:0.563:2	./.	./.	./.	0/1:41,68:31:109:0.624:2	0/1:0,90:30:90:1.00:2	0/1:30,32:31:63:0.516:2
chr17	72949167	rs2307011	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,35:29:63:0.556:2	0/1:15,15:29:30:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	72949649	rs2087718	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,35:33:66:0.530:2	0/1:22,22:31:44:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	72952017	rs9906160	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:31:41:1.00:2	0/1:0,25:30:26:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,54:29:54:1.00:2	0/1:0,54:30:55:1.00:2	0/1:27,31:30:58:0.534:2	0/1:0,65:30:65:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,42:30:42:1.00:2	0/1:0,45:30:45:1.00:2
chr17	72956124	rs3744198	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,3:31:9:0.333:2	0/1:27,28:32:55:0.509:2	0/1:46,44:32:90:0.489:2	0/1:1,78:32:79:0.987:2	./.	0/1:56,36:32:92:0.391:2	0/1:33,32:33:65:0.492:2	./.	0/1:23,36:32:59:0.610:2
chr17	72958370	rs139939422	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,33:31:59:0.559:2	0/1:25,14:32:39:0.359:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	72999773	rs3744204	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:12,3:31:15:0.200:2	0/1:4,5:32:9:0.556:2	./.	./.	./.	./.	0/1:2,7:30:9:0.778:2	0/1:3,8:30:11:0.727:2	0/1:7,8:32:15:0.533:2	0/1:0,9:30:9:1.00:2	./.
chr17	73000061	rs3744203	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:24,26:32:50:0.520:2	0/1:12,13:33:25:0.520:2	./.	0/1:55,44:31:99:0.444:2	./.	0/1:53,45:31:99:0.459:2	0/1:1,115:31:116:0.991:2	0/1:65,56:32:121:0.463:2	0/1:47,41:32:88:0.466:2	0/1:25,35:31:60:0.583:2	./.
chr17	73016489	rs34496172	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,15:29:40:0.375:2	./.	./.	./.	./.	./.
chr17	73016621	rs1044228	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:18,29:30:47:0.617:2	0/1:28,19:31:47:0.404:2	./.	./.	./.	./.	0/1:32,11:30:43:0.256:2	0/1:31,26:30:57:0.456:2	0/1:26,49:31:75:0.653:2	0/1:23,11:29:34:0.324:2	./.
chr17	73038746	rs9660	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,16:32:36:0.444:2	0/1:23,17:31:40:0.425:2	0/1:23,16:33:39:0.410:2	./.	./.	./.	0/1:20,25:33:45:0.556:2
chr17	73089852	rs4788863	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,44:32:73:0.603:2	0/1:26,12:32:38:0.316:2	0/1:2,8:32:10:0.800:2	0/1:66,67:32:133:0.504:2	0/1:97,95:32:192:0.495:2	0/1:67,59:32:126:0.468:2	0/1:1,164:32:165:0.994:2	0/1:92,76:32:168:0.452:2	./.	./.	0/1:0,96:32:96:1.00:2
chr17	73094164	rs61738943	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,32:30:74:0.432:2	./.	./.	./.	./.	./.
chr17	73102078	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,4:31:54:0.074:2	./.	./.	./.	./.	./.	./.	./.
chr17	73106432	rs74697881	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,20:32:27:0.741:2	./.	./.	./.	./.	./.
chr17	73125118	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	73127217	rs3736075	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,13:27:24:0.542:2	0/1:12,7:28:19:0.368:2	./.	0/1:22,8:29:30:0.267:2	0/1:19,10:28:29:0.345:2	0/1:1,34:28:35:0.971:2	./.	0/1:17,7:30:24:0.292:2	0/1:14,14:29:28:0.500:2	0/1:0,22:27:22:1.00:2	0/1:13,7:26:20:0.350:2
chr17	73205976	rs34126097	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:28,13:30:41:0.317:2	0/1:4,7:29:11:0.636:2	./.	./.	0/1:8,8:32:16:0.500:2	./.	./.	0/1:23,8:30:31:0.258:2	./.	0/1:0,14:30:14:1.00:2	0/1:21,15:30:36:0.417:2
chr17	73221439	rs2291029	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,89:31:89:1.00:2	0/1:1,82:31:83:0.988:2	0/1:0,98:31:99:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,53:33:53:1.00:2
chr17	73230856	rs9988	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,26:31:48:0.542:2	0/1:6,10:32:16:0.625:2	0/1:0,9:31:9:1.00:2	0/1:32,27:31:59:0.458:2	0/1:44,27:32:71:0.380:2	./.	0/1:0,50:31:50:1.00:2	0/1:30,25:31:55:0.455:2	0/1:27,15:31:42:0.357:2	./.	0/1:37,32:32:69:0.464:2
chr17	73231710	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:31:59:0.068:2	./.
chr17	73235000	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:30:94:0.043:2	./.	./.	./.
chr17	73235039	rs141085620	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:30:112:0.036:2	./.	./.	./.
chr17	73236151	rs36073102	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,13:31:18:0.722:2	./.	./.
chr17	73237001	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:30:94:0.043:2	./.	./.
chr17	73237109	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:144,4:33:148:0.027:2	./.	./.	./.	./.	./.	./.
chr17	73238508	rs52809447	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,77:33:183:0.421:2	./.	./.	./.	./.
chr17	73257986	rs8075276	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,15:31:26:0.577:2	0/1:5,18:31:23:0.783:2	0/1:0,2:31:2:1.00:2	0/1:11,16:30:27:0.593:2	0/1:20,19:30:39:0.487:2	./.	0/1:0,18:30:18:1.00:2	0/1:11,21:28:32:0.656:2	0/1:7,25:30:32:0.781:2	./.	0/1:7,8:29:15:0.533:2
chr17	73269530	rs1809352	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:30:20:1.00:2	0/1:0,7:27:7:1.00:2	0/1:0,2:31:2:1.00:2	0/1:7,7:31:14:0.500:2	0/1:1,14:28:15:0.933:2	./.	0/1:0,10:26:10:1.00:2	0/1:0,14:29:14:1.00:2	0/1:7,12:32:19:0.632:2	0/1:0,12:29:12:1.00:2	0/1:0,12:27:12:1.00:2
chr17	73269676	rs4789164	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:28:6:1.00:2	0/1:19,21:31:40:0.525:2	0/1:29,19:30:48:0.396:2	./.	0/1:0,39:30:39:1.00:2	0/1:19,27:30:46:0.587:2	0/1:23,29:30:52:0.558:2	./.	0/1:30,15:32:45:0.333:2
chr17	73279624	rs7213318	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:29:50:1.00:2	0/1:1,45:30:46:0.978:2	0/1:0,11:30:11:1.00:2	0/1:1,107:29:108:0.991:2	0/1:0,101:29:101:1.00:2	0/1:0,99:29:99:1.00:2	0/1:0,121:29:121:1.00:2	0/1:1,114:30:115:0.991:2	0/1:0,105:30:105:1.00:2	0/1:0,88:30:88:1.00:2	0/1:0,79:30:79:1.00:2
chr17	73484903	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,16:30:26:0.615:2	./.
chr17	73485707	rs34364349	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,50:32:88:0.568:2	./.	0/1:1,87:31:89:0.989:2	./.	./.	0/1:52,41:32:93:0.441:2	./.	./.
chr17	73487172	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:32:144:0.028:2	./.	./.	./.
chr17	73487533	rs76073955	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,24:32:48:0.500:2	./.	0/1:0,37:31:37:1.00:2	./.	./.	0/1:28,14:33:42:0.333:2	./.	./.
chr17	73488764	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:33:44:0.091:2
chr17	73488794	rs4078259	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,21:31:21:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,2:31:2:1.00:2	0/1:12,14:31:26:0.538:2	0/1:0,31:31:31:1.00:2	./.	0/1:0,20:31:20:1.00:2	0/1:0,11:31:11:1.00:2	0/1:21,15:32:36:0.417:2	0/1:0,27:31:27:1.00:2	0/1:0,29:31:29:1.00:2
chr17	73493874	rs12949173	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,46:30:86:0.535:2	0/1:38,26:30:64:0.406:2	0/1:41,24:30:65:0.369:2	./.	./.
chr17	73498260	rs141219182	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,6:31:13:0.500:2	./.
chr17	73498483	rs7503373	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,5:32:5:1.00:2	0/1:0,2:33:2:1.00:2	./.	0/1:0,7:31:7:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,11:34:11:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,4:32:4:1.00:2
chr17	73498623	rs7502835	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:26:25:1.00:2	0/1:0,12:28:12:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,52:29:52:1.00:2	0/1:0,41:29:41:1.00:2	0/1:0,42:27:42:1.00:2	0/1:0,51:28:51:1.00:2	0/1:37,25:28:62:0.403:2	0/1:0,34:28:35:1.00:2	0/1:12,17:27:29:0.586:2	0/1:0,30:27:30:1.00:2
chr17	73498652	rs77001351	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:31:15:0.533:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	73499196	rs112206208	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,10:30:23:0.435:2	./.	./.	./.	./.	./.	./.
chr17	73513072	rs113255333	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,8:30:24:0.333:2	./.	./.	./.	./.	./.	./.
chr17	73513156	rs8074291	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:17,14:29:31:0.452:2	0/1:7,14:30:21:0.667:2	./.	./.	./.	./.	./.	0/1:19,40:27:59:0.678:2	./.	0/1:0,29:27:29:1.00:2	0/1:12,14:27:27:0.538:2
chr17	73513289	rs6501818	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:24,27:33:51:0.529:2	0/1:11,12:32:23:0.522:2	./.	./.	./.	./.	./.	0/1:27,27:33:54:0.500:2	./.	0/1:0,39:32:39:1.00:2	0/1:34,24:33:58:0.414:2
chr17	73513663	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,8:17:65:0.123:2	./.	./.	./.	./.	./.
chr17	73517536	rs79508780	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,62:32:120:0.517:2	./.	./.	./.	./.
chr17	73518203	rs9911502	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,21:32:46:0.457:2	0/1:9,18:31:27:0.667:2	0/1:0,4:32:4:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,39:32:39:1.00:2	./.	0/1:18,12:30:30:0.400:2
chr17	73518284	rs6501820	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:33:19:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,8:33:8:1.00:2
chr17	73519413	rs8064529	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,40:30:73:0.548:2	0/1:15,29:32:44:0.659:2	0/1:0,12:31:12:1.00:2	0/1:0,91:30:91:1.00:2	0/1:0,80:30:80:1.00:2	0/1:0,97:30:97:1.00:2	0/1:1,87:30:88:0.989:2	0/1:0,123:30:123:1.00:2	0/1:1,100:31:101:0.990:2	./.	0/1:34,34:31:68:0.500:2
chr17	73552185	rs1671036	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,14:31:26:0.538:2	0/1:13,8:31:21:0.381:2	./.	0/1:14,6:29:20:0.300:2	./.	0/1:10,13:32:23:0.565:2	0/1:0,15:32:15:1.00:2	0/1:0,14:30:14:1.00:2
chr17	73559192	rs201741398	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,57:31:119:0.479:2	./.	./.	./.	./.
chr17	73559441	rs34158736	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,33:31:62:0.532:2	./.	0/1:25,25:30:50:0.500:2	./.	./.	./.
chr17	73565171	rs1671021	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,55:33:56:0.982:2	0/1:0,19:33:19:1.00:2	0/1:4,8:33:12:0.667:2	0/1:30,26:32:56:0.464:2	0/1:58,51:32:109:0.468:2	0/1:1,84:32:85:0.988:2	0/1:0,57:31:57:1.00:2	0/1:0,93:32:93:1.00:2	./.	./.	./.
chr17	73566561	rs2305525	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,11:29:13:0.846:2	./.	0/1:0,10:30:10:1.00:2	0/1:2,8:32:11:0.800:2	./.	./.	./.
chr17	73567846	rs1661715	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,11:32:14:0.786:2	0/1:0,7:28:7:1.00:2	./.	0/1:9,13:32:22:0.591:2	0/1:15,15:31:30:0.500:2	0/1:11,13:29:24:0.542:2	0/1:0,26:31:27:1.00:2	0/1:0,30:31:30:1.00:2	./.	./.	./.
chr17	73568055	rs1661714	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,18:33:34:0.529:2	0/1:7,6:33:13:0.462:2	0/1:3,4:32:7:0.571:2	0/1:21,20:32:41:0.488:2	0/1:41,39:32:80:0.488:2	./.	0/1:0,50:32:50:1.00:2	0/1:29,41:32:70:0.586:2	./.	./.	./.
chr17	73569115	rs202100751	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:31:124:0.032:2	./.	./.	./.	./.	./.
chr17	73570718	rs1126939	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,21:31:45:0.467:2	0/1:14,17:30:31:0.548:2	./.	0/1:18,37:31:55:0.673:2	0/1:51,46:30:97:0.474:2	0/1:39,44:31:83:0.530:2	0/1:0,71:30:71:1.00:2	0/1:1,86:29:87:0.989:2	./.	./.	./.
chr17	73570756	rs1661712	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,14:27:31:0.452:2	0/1:10,11:31:21:0.524:2	./.	0/1:8,26:28:34:0.765:2	0/1:21,28:29:49:0.571:2	0/1:28,22:29:50:0.440:2	0/1:0,36:28:36:1.00:2	0/1:0,35:30:35:1.00:2	./.	./.	./.
chr17	73624802	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,4:32:73:0.055:2	./.	./.	./.	./.	./.	./.	./.
chr17	73625179	rs181843598	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,16:32:44:0.364:2
chr17	73625286	rs820190	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:29,23:31:52:0.442:2	0/1:22,25:31:47:0.532:2	./.	0/1:38,21:31:59:0.356:2	./.	0/1:44,33:30:77:0.429:2	0/1:31,24:31:55:0.436:2	0/1:43,43:30:86:0.500:2	0/1:35,16:31:51:0.314:2	./.	./.
chr17	73625430	rs4788902	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,7:30:11:0.636:2	./.	./.	0/1:1,6:31:7:0.857:2	0/1:3,5:30:8:0.625:2	0/1:7,4:30:11:0.364:2	0/1:8,4:29:12:0.333:2	0/1:5,6:31:11:0.545:2	0/1:7,4:30:11:0.364:2	0/1:0,10:31:10:1.00:2	0/1:0,13:31:13:1.00:2
chr17	73625478	rs820191	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:29:31:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,35:30:35:1.00:2	0/1:1,40:30:41:0.976:2	0/1:0,35:29:35:1.00:2	0/1:1,41:30:42:0.976:2	0/1:0,50:29:50:1.00:2	0/1:0,41:29:41:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,32:30:32:1.00:2
chr17	73626295	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:31:114:0.035:2	./.	./.	./.	./.	./.
chr17	73626712	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:32:192:0.021:2	./.	./.	./.	./.	./.
chr17	73626923	rs55982817	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,3:25:11:0.273:2	./.	./.	0/1:4,4:25:8:0.500:2	0/1:3,5:26:8:0.625:2
chr17	73627323	rs35273978	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,56:31:113:0.496:2	./.	./.	./.	./.	./.	./.	./.
chr17	73627539	rs820196	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,37:32:74:0.500:2	0/1:35,17:31:52:0.327:2	./.	./.	./.	0/1:66,76:33:142:0.535:2	0/1:66,26:32:93:0.283:2	0/1:85,69:32:154:0.448:2	0/1:70,62:33:132:0.470:2	./.	./.
chr17	73627565	rs820197	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:30:81:1.00:2	0/1:0,55:29:55:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,150:29:150:1.00:2	0/1:0,181:30:181:1.00:2	0/1:0,151:30:151:1.00:2	0/1:1,93:30:94:0.989:2	0/1:0,147:29:147:1.00:2	0/1:0,123:31:123:1.00:2	0/1:0,125:30:125:1.00:2	0/1:0,69:29:69:1.00:2
chr17	73636368	rs117954398	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,90:32:193:0.466:2	./.	./.	./.	./.	./.	./.
chr17	73643769	rs820207	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,20:31:20:1.00:2	0/1:0,22:32:22:1.00:2	./.	0/1:0,29:32:29:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,37:32:37:1.00:2
chr17	73657711	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,5:21:38:0.132:2	./.	./.	./.	./.	./.	./.
chr17	73667930	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2	./.	./.	./.	./.	./.	./.
chr17	73698557	rs820232	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:31:38:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,6:28:6:1.00:2	0/1:1,37:30:38:0.974:2	0/1:0,25:30:25:1.00:2	0/1:0,32:28:32:1.00:2	0/1:1,36:29:37:0.973:2	0/1:0,37:29:37:1.00:2	0/1:1,34:32:35:0.971:2	0/1:0,47:31:47:1.00:2	0/1:0,43:30:45:1.00:2
chr17	73702135	rs56144802	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,18:30:38:0.474:2	./.	./.	./.	./.	./.	./.
chr17	73723897	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:32:47:0.085:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	73724501	rs148048907	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:30,24:30:54:0.444:2	0/1:20,29:30:49:0.592:2	./.	./.	./.	./.	0/1:53,60:30:113:0.531:2	./.	./.	./.	./.
chr17	73728294	rs149030156	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,56:32:87:0.644:2	./.	./.
chr17	73733421	rs149659118	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:31:35:0.114:2
chr17	73735725	rs180763710	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,27:30:71:0.386:2	./.	./.	./.	./.	./.	./.	./.
chr17	73748322	rs145351926	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,25:30:43:0.581:2	./.
chr17	73750859	rs8669	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,11:31:20:0.550:2	0/1:0,130:30:130:1.00:2	0/1:1,170:30:171:0.994:2	./.	0/1:88,77:30:165:0.467:2	0/1:84,45:29:129:0.349:2	0/1:54,57:29:111:0.514:2	0/1:1,73:30:74:0.986:2	./.
chr17	73753503	rs871443	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,21:30:21:1.00:2	0/1:0,20:30:20:1.00:2	./.	0/1:33,19:31:52:0.365:2	0/1:16,17:29:33:0.515:2	0/1:22,13:30:35:0.371:2	0/1:0,21:29:21:1.00:2	0/1:1,46:30:47:0.979:2	0/1:0,38:31:38:1.00:2	0/1:15,22:30:37:0.595:2	0/1:0,24:31:24:1.00:2
chr17	73760110	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,4:28:35:0.114:2	./.	./.	./.	./.	./.	./.
chr17	73775139	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,7:31:76:0.092:2	./.	./.
chr17	73775220	rs188695621	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,40:32:68:0.588:2	./.	./.	./.	./.	./.	./.
chr17	73780813	rs147842313	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,22:31:61:0.361:2	./.	./.	./.	./.	./.	./.	./.
chr17	73812909	rs9908146	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:29:30:1.00:2	0/1:0,25:29:25:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,42:28:42:1.00:2	0/1:0,48:28:48:1.00:2	0/1:0,49:29:49:1.00:2	0/1:0,26:29:26:1.00:2	0/1:1,48:28:49:0.980:2	0/1:0,42:30:42:1.00:2	0/1:0,26:27:26:1.00:2	0/1:19,7:26:26:0.269:2
chr17	73812919	rs58342122	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,18:33:31:0.581:2	./.
chr17	73816026	rs11868471	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:27:26:1.00:2	0/1:0,10:26:10:1.00:2	0/1:0,2:28:2:1.00:2	0/1:0,32:27:32:1.00:2	0/1:0,19:26:19:1.00:2	0/1:0,26:28:26:1.00:2	0/1:0,19:27:19:1.00:2	0/1:0,26:27:26:1.00:2	0/1:0,27:28:27:1.00:2	0/1:13,9:25:22:0.409:2	0/1:9,6:27:15:0.400:2
chr17	73818642	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:32:62:0.065:2	./.	./.	./.	./.	./.
chr17	73819525	rs8078208	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,41:32:42:0.976:2	0/1:0,24:32:24:1.00:2	./.	0/1:26,29:32:56:0.527:2	./.	./.	0/1:30,30:32:60:0.500:2	0/1:50,26:32:76:0.342:2	./.	./.	0/1:30,32:32:62:0.516:2
chr17	73824121	rs7210574	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,52:32:53:0.981:2	0/1:1,33:31:34:0.971:2	0/1:5,5:32:10:0.500:2	0/1:55,37:31:92:0.402:2	./.	./.	0/1:40,24:30:64:0.375:2	0/1:55,26:32:81:0.321:2	./.	0/1:36,41:30:77:0.532:2	0/1:36,28:31:64:0.438:2
chr17	73826491	rs35037984	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,49:30:112:0.441:2	./.	./.	./.	./.	./.
chr17	73827205	rs1135688	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:30:22:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,2:29:2:1.00:2	0/1:21,13:31:34:0.382:2	./.	./.	0/1:23,13:29:36:0.361:2	0/1:20,26:31:46:0.565:2	./.	0/1:7,8:32:15:0.533:2	0/1:20,19:31:39:0.487:2
chr17	73831939	rs375293311	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:32:101:0.040:2	./.	./.	./.
chr17	73836162	rs7223416	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:33:36:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,3:34:3:1.00:2	0/1:26,18:34:44:0.409:2	./.	./.	0/1:23,18:34:41:0.439:2	0/1:32,15:33:47:0.319:2	./.	0/1:14,14:33:28:0.500:2	0/1:20,8:32:28:0.286:2
chr17	73839137	rs3744007	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,5:32:8:0.625:2
chr17	73839326	rs9904366	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,23:29:45:0.511:2
chr17	73842892	rs2305914	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,49:29:97:0.505:2	./.
chr17	73871098	rs143007460	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,36:29:73:0.493:2	./.
chr17	73871467	rs3744017	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,25:32:25:1.00:2	0/1:0,19:33:19:1.00:2	./.	0/1:28,23:31:51:0.451:2	./.	./.	0/1:15,19:32:34:0.559:2	0/1:24,23:30:47:0.489:2	./.	./.	./.
chr17	73886888	rs3760128	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,34:29:35:0.971:2	0/1:0,27:28:27:1.00:2	./.	0/1:20,16:29:36:0.444:2	./.	./.	0/1:16,12:26:28:0.429:2	0/1:18,28:30:46:0.609:2	./.	0/1:0,34:28:34:1.00:2	0/1:1,42:28:43:0.977:2
chr17	73888354	rs34974290	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,17:31:17:1.00:2	0/1:1,8:32:9:0.889:2	0/1:0,3:30:3:1.00:2	0/1:8,6:31:14:0.429:2	./.	./.	0/1:8,7:32:15:0.467:2	0/1:19,6:31:25:0.240:2	./.	./.	0/1:7,7:31:14:0.500:2
chr17	73888423	rs7222755	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,8:31:9:0.889:2	0/1:2,13:32:15:0.867:2	./.	0/1:15,8:31:23:0.348:2	./.	./.	./.	0/1:11,7:32:18:0.389:2	./.	0/1:6,4:33:10:0.400:2	0/1:12,4:32:16:0.250:2
chr17	73888427	rs7222757	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,8:31:9:0.889:2	0/1:2,13:32:15:0.867:2	./.	0/1:15,9:32:24:0.375:2	./.	./.	./.	0/1:11,8:32:19:0.421:2	./.	0/1:7,5:33:12:0.417:2	0/1:9,4:33:13:0.308:2
chr17	73888534	rs148442922	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,30:30:60:0.500:2	0/1:32,22:31:54:0.407:2
chr17	73892983	rs55643300	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,7:30:13:0.538:2	./.	./.	./.	./.	./.	./.
chr17	73895639	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,10:15:124:0.081:2	./.	0/1:119,13:13:133:0.098:2	0/1:118,13:17:131:0.099:2	./.	./.	./.	./.
chr17	73897046	rs9902371	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,14:29:14:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,2:29:2:1.00:2	0/1:23,12:29:36:0.343:2	./.	./.	0/1:34,18:27:52:0.346:2	0/1:25,21:28:46:0.457:2	./.	./.	0/1:19,13:27:33:0.406:2
chr17	73897977	rs76054219	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:32:38:0.105:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	73900688	rs3744015	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,7:30:7:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,5:29:5:1.00:2	0/1:11,11:31:22:0.500:2	./.	./.	./.	0/1:9,3:30:12:0.250:2	./.	0/1:0,6:33:6:1.00:2	0/1:0,6:32:6:1.00:2
chr17	73910027	rs61736662	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,11:30:19:0.579:2	./.
chr17	73913884	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,53:29:103:0.520:2	./.	./.	./.
chr17	73915853	rs61741708	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,59:32:94:0.628:2	./.	./.	./.
chr17	73916423	rs7213548	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,35:32:86:0.407:2	./.	./.	./.	./.	./.	./.	./.
chr17	73919538	rs7218738	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,45:31:118:0.381:2	./.	./.	./.	./.	./.	./.	./.
chr17	73922941	rs2305913	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,100:32:102:0.980:2	0/1:0,47:31:47:1.00:2	0/1:0,8:32:8:1.00:2	0/1:49,47:31:96:0.490:2	./.	./.	0/1:54,40:32:94:0.426:2	0/1:63,52:32:115:0.452:2	./.	0/1:0,75:32:75:1.00:2	0/1:0,109:32:109:1.00:2
chr17	73926121	rs1135889	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,15:34:15:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,5:31:5:1.00:2	./.	./.	./.	0/1:19,14:32:33:0.424:2	0/1:25,10:31:35:0.286:2	./.	./.	0/1:13,15:32:28:0.536:2
chr17	73934235	rs79303947	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,52:32:120:0.433:2	0/1:63,67:32:130:0.515:2
chr17	73944496	rs35629489	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,18:31:35:0.514:2	./.
chr17	73945957	rs8065946	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,56:32:114:0.491:2	./.
chr17	73949540	rs1135640	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,86:33:176:0.489:2	0/1:101,71:32:173:0.413:2	0/1:3,149:32:152:0.980:2	0/1:109,87:32:196:0.444:2	0/1:122,73:33:195:0.374:2	0/1:0,156:34:156:1.00:2	./.	./.
chr17	73969835	rs3744032	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,14:30:47:0.298:2	./.	./.	./.	./.	0/1:34,31:31:65:0.477:2	./.
chr17	73987590	rs11544990	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,39:32:83:0.470:2	./.	./.	./.	./.	./.	./.	./.
chr17	73987652	rs10852767	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,49:31:102:0.480:2	./.	0/1:45,49:32:94:0.521:2	./.	./.	0/1:22,38:33:60:0.633:2	./.
chr17	73987683	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:32:57:0.070:2	./.	./.	./.
chr17	73999478	rs17884251	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,11:28:36:0.306:2	./.	./.	./.	./.	./.	./.
chr17	74003463	rs17886642	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,22:31:61:0.361:2	./.	0/1:25,24:32:49:0.490:2	./.	./.	0/1:30,22:31:52:0.423:2	./.
chr17	74003496	rs140236352	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,18:29:28:0.667:2
chr17	74003805	rs7342882	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,24:31:64:0.375:2	./.	0/1:61,33:31:94:0.351:2	./.	./.	0/1:48,28:32:76:0.368:2	./.
chr17	74003846	rs7342883	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,18:29:46:0.391:2	./.	0/1:44,24:31:68:0.353:2	./.	./.	0/1:34,16:31:50:0.320:2	./.
chr17	74005476	rs7225323	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,25:30:55:0.455:2	./.	0/1:27,28:30:55:0.509:2	./.	./.	0/1:32,26:29:58:0.448:2	./.
chr17	74005580	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:32:68:0.059:2	./.
chr17	74005611	rs75019874	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,59:29:118:0.509:2	./.	./.	0/1:45,20:31:65:0.308:2	./.
chr17	74005802	rs146508997	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,28:31:54:0.519:2	./.	./.
chr17	74006122	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:30:61:0.066:2	./.	./.	./.	./.
chr17	74014628	rs2071193	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,143:31:143:1.00:2	0/1:72,73:31:145:0.503:2	0/1:61,74:31:135:0.548:2	./.	0/1:74,72:31:146:0.493:2	0/1:79,67:31:146:0.459:2	./.	./.
chr17	74014668	rs2071192	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,158:30:159:0.994:2	0/1:93,104:29:197:0.528:2	0/1:0,167:29:167:1.00:2	./.	0/1:98,93:30:191:0.487:2	0/1:100,70:30:170:0.412:2	0/1:63,47:30:111:0.427:2	0/1:65,47:30:112:0.420:2
chr17	74015697	rs117610545	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,25:31:56:0.446:2	./.	./.	./.	./.	./.	./.
chr17	74018595	rs139895076	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,13:30:39:0.333:2	./.	./.	./.	./.
chr17	74018597	rs10445216	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,11:32:28:0.393:2	./.	./.	./.	./.	./.	./.	./.
chr17	74019453	rs150149800	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,71:32:119:0.597:2	./.	./.	./.	./.	./.	./.	./.
chr17	74019680	rs78044548	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,54:30:121:0.446:2	./.	./.	./.	./.	./.	./.	./.
chr17	74036573	rs2260516	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,34:29:87:0.391:2	./.	./.	./.	./.	0/1:61,57:31:118:0.483:2
chr17	74056413	rs2665998	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,12:33:34:0.353:2	0/1:1,7:32:8:0.875:2	0/1:0,3:32:3:1.00:2	0/1:29,18:33:47:0.383:2	0/1:4,16:32:20:0.800:2	0/1:7,13:32:20:0.650:2	0/1:16,8:32:24:0.333:2	0/1:19,23:31:42:0.548:2	./.	./.	0/1:1,24:33:25:0.960:2
chr17	74063305	rs151318558	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:85,61:32:146:0.418:2	./.	./.	./.	./.	./.	./.
chr17	74066447	rs2443168	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,19:33:51:0.373:2	0/1:12,18:33:30:0.600:2	0/1:0,8:32:8:1.00:2	0/1:39,28:33:67:0.418:2	0/1:20,31:31:51:0.608:2	0/1:31,22:32:53:0.415:2	0/1:36,20:32:56:0.357:2	0/1:43,24:32:67:0.358:2	./.	./.	0/1:0,76:32:76:1.00:2
chr17	74073386	rs8192514	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.
chr17	74075414	rs202021985	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,64:30:150:0.432:2	./.	./.	./.	./.
chr17	74076415	rs2257020	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,31:30:63:0.500:2	0/1:13,11:31:24:0.458:2	./.	0/1:0,88:31:88:1.00:2	0/1:80,55:30:136:0.407:2	0/1:49,56:31:105:0.533:2	0/1:73,82:31:155:0.529:2	0/1:65,65:31:130:0.500:2	0/1:0,95:31:96:1.00:2	0/1:27,37:31:64:0.578:2	./.
chr17	74076421	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:29:60:0.067:2
chr17	74077797	rs1043149	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:28,30:30:58:0.517:2	0/1:30,16:31:46:0.348:2	0/1:0,14:29:14:1.00:2	./.	0/1:89,78:30:167:0.467:2	./.	0/1:65,71:29:136:0.522:2	0/1:59,81:30:140:0.579:2	./.	./.	0/1:48,35:29:83:0.422:2
chr17	74078113	rs140797843	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,10:31:27:0.370:2	0/1:19,8:28:27:0.296:2	./.	./.	./.	./.	./.	./.
chr17	74081420	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:32:57:0.070:2	./.	./.
chr17	74082915	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,10:28:22:0.455:2	./.	./.	./.
chr17	74084176	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,6:31:193:0.031:2	./.	./.	./.	./.
chr17	74097331	rs9895541	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,75:32:193:0.389:2	./.	./.	./.	./.	./.	./.	./.
chr17	74152366	rs881502	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,29:33:61:0.475:2	0/1:21,27:32:48:0.563:2	0/1:0,12:32:12:1.00:2	0/1:44,35:33:79:0.443:2	0/1:61,31:32:92:0.337:2	0/1:57,36:32:93:0.387:2	0/1:63,49:33:112:0.438:2	0/1:64,37:32:101:0.366:2	0/1:0,77:33:77:1.00:2	./.	0/1:30,28:32:58:0.483:2
chr17	74154524	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,27:31:51:0.529:2	./.
chr17	74163759	rs61744818	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:70,50:32:120:0.417:2	0/1:40,27:32:67:0.403:2	0/1:0,25:32:25:1.00:2	./.	./.	./.	0/1:104,53:32:157:0.338:2	./.	./.	./.	./.
chr17	74163767	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:136,4:33:140:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr17	74163821	rs2289603	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,42:31:112:0.375:2	0/1:34,17:31:51:0.333:2	0/1:0,26:30:26:1.00:2	0/1:1,108:31:109:0.991:2	0/1:62,43:30:105:0.410:2	./.	0/1:101,55:31:156:0.353:2	./.	0/1:90,68:32:158:0.430:2	0/1:61,65:32:126:0.516:2	0/1:68,70:32:138:0.507:2
chr17	74261677	rs2585751	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,2:34:2:1.00:2	./.	0/1:0,2:36:2:1.00:2	0/1:2,6:33:8:0.750:2	0/1:0,4:32:4:1.00:2	./.	0/1:2,4:33:6:0.667:2	./.	./.	0/1:0,4:34:4:1.00:2
chr17	74266322	rs712833	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,11:29:27:0.407:2	./.	./.
chr17	74273334	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,4:31:40:0.100:2	./.	./.	./.	./.	./.	./.	./.
chr17	74275160	rs347675	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,15:32:32:0.469:2	0/1:15,6:33:21:0.286:2	./.	./.	0/1:49,28:32:77:0.364:2	0/1:16,21:32:37:0.568:2	./.	./.	./.	0/1:38,18:33:56:0.321:2	./.
chr17	74276788	rs61759535	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,56:32:111:0.505:2	./.	./.
chr17	74286082	rs4789273	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,42:31:42:1.00:2	0/1:0,24:31:24:1.00:2	./.	0/1:35,23:30:58:0.397:2	0/1:1,18:30:19:0.947:2	0/1:36,19:29:55:0.345:2	0/1:32,18:31:50:0.360:2	0/1:58,31:31:89:0.348:2	0/1:43,19:32:62:0.306:2	0/1:38,27:29:65:0.415:2	./.
chr17	74286106	rs4789274	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,48:31:48:1.00:2	0/1:0,32:31:33:1.00:2	./.	0/1:45,36:29:81:0.444:2	0/1:1,39:30:40:0.975:2	0/1:52,25:30:78:0.325:2	0/1:50,25:31:75:0.333:2	0/1:76,38:31:115:0.333:2	0/1:55,29:31:84:0.345:2	0/1:49,34:30:83:0.410:2	./.
chr17	74287204	rs2279052	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,64:32:64:1.00:2	0/1:2,35:32:37:0.946:2	./.	0/1:38,37:32:75:0.493:2	0/1:1,64:31:65:0.985:2	0/1:34,32:32:67:0.485:2	0/1:40,41:32:81:0.506:2	0/1:44,37:32:81:0.457:2	0/1:39,32:34:71:0.451:2	0/1:45,26:32:71:0.366:2	./.
chr17	74287389	rs2279053	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,78:30:80:0.987:2	0/1:0,48:29:48:1.00:2	./.	0/1:46,60:30:106:0.566:2	0/1:3,107:30:110:0.973:2	0/1:65,45:30:110:0.409:2	0/1:65,61:29:126:0.484:2	0/1:59,52:30:111:0.468:2	0/1:82,49:31:131:0.374:2	0/1:44,52:30:96:0.542:2	./.
chr17	74287594	rs2279054	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,176:30:177:0.994:2	0/1:1,102:31:103:0.990:2	./.	0/1:82,108:29:190:0.568:2	0/1:3,183:29:187:0.984:2	0/1:88,109:29:197:0.553:2	0/1:104,90:28:194:0.464:2	0/1:68,126:30:194:0.649:2	0/1:89,108:30:197:0.548:2	0/1:71,90:29:161:0.559:2	./.
chr17	74288262	rs3826286	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,46:29:46:1.00:2	0/1:0,24:29:24:1.00:2	./.	0/1:37,33:28:70:0.471:2	0/1:2,95:29:97:0.979:2	0/1:47,26:30:73:0.356:2	0/1:43,42:29:85:0.494:2	0/1:41,38:28:79:0.481:2	0/1:30,34:29:64:0.531:2	0/1:38,18:30:56:0.321:2	./.
chr17	74288358	rs113162124	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:30:70:0.057:2	./.
chr17	74288372	rs6501877	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:35,8:27:43:0.186:2	0/1:21,4:28:25:0.160:2	./.	./.	0/1:86,8:26:94:0.085:2	0/1:64,5:31:69:0.072:2	./.	0/1:96,6:33:102:0.059:2	./.	0/1:59,5:27:64:0.078:2	./.
chr17	74288410	rs80109605	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,13:30:57:0.228:2	0/1:14,8:30:22:0.364:2	./.	0/1:66,7:28:73:0.096:2	0/1:65,25:29:90:0.278:2	./.	0/1:96,8:32:104:0.077:2	0/1:98,15:32:113:0.133:2	0/1:61,4:29:65:0.062:2	0/1:57,9:31:66:0.136:2	./.
chr17	74288421	rs6501878	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:1,14:32:16:0.933:2	./.	0/1:44,29:32:74:0.397:2	./.	0/1:54,26:32:80:0.325:2	0/1:63,34:32:98:0.351:2	0/1:64,36:32:101:0.360:2	0/1:43,23:33:66:0.348:2	0/1:41,18:32:61:0.305:2	./.
chr17	74288422	rs6501879	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:1,15:32:16:0.938:2	./.	0/1:44,30:32:74:0.405:2	0/1:3,85:31:88:0.966:2	0/1:53,27:31:80:0.338:2	0/1:66,35:32:101:0.347:2	0/1:62,38:32:100:0.380:2	0/1:44,24:32:69:0.353:2	0/1:41,20:32:61:0.328:2	./.
chr17	74289242	rs3803736	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,41:33:93:0.441:2	./.	./.
chr17	74289500	rs3803737	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,94:32:98:0.959:2	0/1:0,54:32:54:1.00:2	./.	0/1:75,68:31:143:0.476:2	0/1:1,140:32:141:0.993:2	0/1:69,52:32:121:0.430:2	0/1:107,76:32:183:0.415:2	0/1:90,63:32:153:0.412:2	0/1:69,54:33:123:0.439:2	0/1:58,53:32:112:0.477:2	./.
chr17	74289519	rs146697124	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:65,44:33:109:0.404:2	0/1:37,23:33:60:0.383:2	./.	./.	0/1:82,61:32:143:0.427:2	./.	./.	./.	./.	./.	./.
chr17	74289705	rs6501880	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,169:30:171:0.988:2	0/1:0,152:30:152:1.00:2	./.	0/1:92,99:30:191:0.518:2	0/1:0,189:30:189:1.00:2	0/1:116,80:30:196:0.408:2	0/1:130,69:31:199:0.347:2	0/1:107,89:30:196:0.454:2	0/1:104,88:31:193:0.458:2	0/1:97,90:30:187:0.481:2	./.
chr17	74289839	rs6501881	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,98:30:102:0.961:2	0/1:1,76:30:78:0.987:2	./.	0/1:58,55:30:113:0.487:2	0/1:3,101:29:104:0.971:2	0/1:65,78:29:143:0.545:2	0/1:84,53:30:137:0.387:2	0/1:78,77:30:155:0.497:2	0/1:65,62:30:127:0.488:2	0/1:61,67:29:128:0.523:2	./.
chr17	74289875	rs6501882	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,67:31:67:1.00:2	0/1:1,49:32:50:0.980:2	./.	0/1:55,48:31:103:0.466:2	0/1:0,71:31:71:1.00:2	0/1:43,58:30:101:0.574:2	0/1:63,40:31:103:0.388:2	0/1:59,53:32:112:0.473:2	0/1:49,51:32:100:0.510:2	0/1:47,48:31:95:0.505:2	./.
chr17	74289908	rs6501883	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,54:31:54:1.00:2	0/1:0,26:32:26:1.00:2	./.	0/1:36,28:32:64:0.438:2	0/1:0,47:31:47:1.00:2	0/1:25,39:31:64:0.609:2	0/1:41,21:33:62:0.339:2	0/1:41,43:33:84:0.512:2	0/1:38,44:32:82:0.537:2	0/1:25,26:32:51:0.510:2	./.
chr17	74290069	rs149886354	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,20:32:49:0.408:2	./.	./.	./.
chr17	74290097	rs7225131	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,19:33:19:1.00:2	0/1:0,21:33:21:1.00:2	./.	0/1:21,16:32:37:0.432:2	0/1:0,20:32:20:1.00:2	0/1:22,13:32:35:0.371:2	0/1:13,7:33:20:0.350:2	0/1:16,20:33:36:0.556:2	0/1:18,15:34:33:0.455:2	0/1:8,9:33:17:0.529:2	./.
chr17	74300497	rs73996306	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,6:33:19:0.333:2	./.	./.
chr17	74307737	rs10459	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:38,35:33:73:0.479:2	0/1:28,15:31:43:0.349:2	./.	0/1:48,49:33:97:0.505:2	./.	./.	0/1:76,40:33:116:0.345:2	./.	0/1:61,50:33:111:0.450:2	./.	./.
chr17	74309947	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,44:32:96:0.463:2
chr17	74324862	rs138912060	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,43:31:84:0.512:2	./.	./.	./.	./.	./.	./.	./.
chr17	74381555	rs2247856	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,3:29:5:0.600:2	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.
chr17	74381562	rs201987985	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.
chr17	74381567	rs346803	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,3:22:5:0.600:2	0/1:0,3:30:3:1.00:2	0/1:0,3:26:3:1.00:2	./.	0/1:0,6:31:6:1.00:2	0/1:0,2:29:2:1.00:2	./.
chr17	74381682	rs56342542	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.
chr17	74383475	rs3744037	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,90:29:96:0.938:2	0/1:0,56:29:56:1.00:2	0/1:3,10:30:13:0.769:2	0/1:40,75:30:115:0.652:2	./.	0/1:70,68:29:138:0.493:2	./.	./.	./.	./.	0/1:41,54:29:95:0.568:2
chr17	74383601	rs346802	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,16:30:44:0.364:2	./.	./.	0/1:22,24:31:46:0.522:2	./.	./.
chr17	74383644	rs143376530	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,5:31:14:0.357:2	./.
chr17	74387284	rs3803739	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,14:30:39:0.359:2	0/1:21,36:32:57:0.632:2	./.	0/1:28,23:32:51:0.451:2	./.	./.	0/1:25,9:32:34:0.265:2	0/1:27,23:30:50:0.460:2
chr17	74387455	rs34070229	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,49:27:76:0.653:2	./.	./.	./.	./.	./.
chr17	74401374	rs144543657	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,56:31:115:0.487:2	./.
chr17	74465916	rs72466448	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,40:30:67:0.597:2	./.	./.	./.	./.	./.
chr17	74467925	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:31:148:0.027:2	./.	./.
chr17	74475024	rs3744045	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:30:26:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,2:30:2:1.00:2	0/1:0,46:29:46:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,32:29:32:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,16:30:16:1.00:2	0/1:5,11:32:16:0.688:2	0/1:0,20:30:20:1.00:2
chr17	74475975	rs3809694	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:31:3:0.667:2	0/1:51,25:31:76:0.329:2	0/1:0,49:30:49:1.00:2	0/1:34,41:30:75:0.547:2	0/1:30,20:30:50:0.400:2	0/1:53,39:30:92:0.424:2	0/1:52,39:31:91:0.429:2	0/1:40,32:30:72:0.444:2	./.
chr17	74524651	rs4238995	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,8:33:33:0.242:2	0/1:9,6:28:15:0.400:2	./.	0/1:0,28:30:28:1.00:2	0/1:25,6:31:31:0.194:2	0/1:22,16:30:38:0.421:2	./.	0/1:28,16:32:44:0.364:2	./.	0/1:15,9:32:24:0.375:2	0/1:20,7:30:27:0.259:2
chr17	74524652	rs8077736	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,8:27:33:0.242:2	0/1:10,6:31:16:0.375:2	./.	0/1:0,28:30:28:1.00:2	0/1:26,6:31:32:0.188:2	0/1:22,16:31:38:0.421:2	./.	0/1:28,16:31:44:0.364:2	./.	0/1:15,9:31:24:0.375:2	0/1:21,7:30:28:0.250:2
chr17	74555106	rs4647885	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,36:29:93:0.387:2	0/1:89,70:30:159:0.440:2	0/1:44,39:30:83:0.470:2	0/1:94,76:30:170:0.447:2	./.	0/1:93,71:30:164:0.433:2	0/1:110,82:31:192:0.427:2
chr17	74574826	rs2304921	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,43:32:94:0.457:2	./.	./.	./.	./.
chr17	74625686	rs8077382	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,76:30:189:0.404:2	./.	./.	./.
chr17	74625715	rs8081258	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,73:28:179:0.408:2	./.	./.	./.
chr17	74732507	rs237058	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,13:30:13:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,13:32:13:1.00:2
chr17	74733099	rs237057	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:29:95:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,124:30:124:1.00:2	0/1:0,158:29:158:1.00:2	0/1:0,149:29:149:1.00:2	0/1:1,95:30:96:0.990:2	0/1:0,150:29:150:1.00:2	0/1:0,136:31:136:1.00:2	0/1:2,105:29:107:0.981:2	0/1:0,73:29:73:1.00:2
chr17	74733162	rs140957080	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,39:32:83:0.470:2	./.	./.	./.	./.
chr17	74733213	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:32:76:0.053:2	./.
chr17	74868887	rs191831149	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,59:31:94:0.628:2
chr17	74878259	rs571264	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,56:29:87:0.651:2	./.	./.	./.	./.	./.	./.
chr17	74921072	rs3889145	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,31:30:62:0.500:2	./.	./.	0/1:30,30:30:60:0.500:2	./.	0/1:19,27:30:46:0.587:2	./.
chr17	74921129	rs34056052	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:31:5:1.00:2	./.	./.	./.	./.	./.	0/1:33,24:32:57:0.421:2	./.	./.
chr17	74922706	rs33966966	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,17:32:35:0.486:2	0/1:10,7:32:17:0.412:2	./.	./.	./.	0/1:18,23:31:41:0.561:2	./.	./.	./.	0/1:16,23:31:39:0.590:2	./.
chr17	74928758	rs79286496	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,66:31:135:0.493:2	0/1:93,103:31:196:0.526:2	./.	./.	0/1:54,37:31:91:0.407:2	./.
chr17	74936576	rs8081793	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,19:30:61:0.317:2	0/1:11,12:30:23:0.522:2	./.	./.	./.	0/1:27,28:29:56:0.509:2	./.	./.	./.	0/1:37,29:29:66:0.439:2	0/1:25,19:28:45:0.432:2
chr17	74942478	rs8067984	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,13:31:24:0.542:2	0/1:13,18:32:31:0.581:2	./.	./.	0/1:38,25:30:63:0.397:2	0/1:28,29:30:57:0.509:2	0/1:36,29:30:65:0.446:2	0/1:46,24:31:70:0.343:2	./.	0/1:23,14:33:37:0.378:2	0/1:0,37:31:37:1.00:2
chr17	74944151	rs71384132	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,9:31:38:0.237:2	./.	./.	0/1:10,4:26:14:0.286:2	./.
chr17	75190846	rs673918	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,149:32:149:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,179:33:179:1.00:2	0/1:0,187:32:187:1.00:2	0/1:1,186:32:187:0.995:2	0/1:1,193:32:194:0.995:2	0/1:1,185:33:186:0.995:2	0/1:0,192:33:192:1.00:2	0/1:0,174:32:174:1.00:2	0/1:0,182:32:182:1.00:2
chr17	75190962	rs674402	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,31:32:58:0.534:2	0/1:23,25:31:48:0.521:2	./.	0/1:60,35:32:95:0.368:2	0/1:40,46:31:86:0.535:2	./.	0/1:30,46:31:76:0.605:2	0/1:3,111:31:114:0.974:2	0/1:23,40:31:63:0.635:2	./.	./.
chr17	75212594	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,67:29:137:0.489:2	./.	./.	./.	./.	./.	./.	./.
chr17	75277611	rs8070026	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:29:13:0.308:2	0/1:5,6:28:11:0.545:2	./.	./.	./.	./.	./.	./.
chr17	75303298	rs4789439	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:32:29:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,47:32:47:1.00:2	0/1:20,12:32:32:0.375:2	0/1:23,16:31:39:0.410:2	0/1:0,22:33:22:1.00:2	0/1:0,46:32:46:1.00:2	0/1:19,12:34:31:0.387:2	0/1:0,25:32:25:1.00:2	0/1:0,20:32:20:1.00:2
chr17	75369578	rs7217986	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:31:23:1.00:2	0/1:0,7:30:7:1.00:2	0/1:3,5:32:8:0.625:2	0/1:0,23:31:23:1.00:2	0/1:32,16:30:48:0.333:2	0/1:38,10:31:48:0.208:2	0/1:17,6:32:23:0.261:2	0/1:2,31:32:33:0.939:2	0/1:17,16:32:33:0.485:2	./.	./.
chr17	75398408	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,4:24:12:0.333:2
chr17	75398498	rs34587622	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	75425589	rs9915953	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,50:32:105:0.476:2	./.	./.	./.
chr17	75426911	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.	./.
chr17	75441756	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,68:31:179:0.380:2	./.	./.	./.	./.	./.
chr17	75494705	rs2627223	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:29:35:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,99:30:99:1.00:2	0/1:0,71:30:71:1.00:2	0/1:0,96:30:96:1.00:2	0/1:0,91:30:92:1.00:2	0/1:49,58:30:107:0.542:2	0/1:0,73:30:73:1.00:2	0/1:0,39:31:39:1.00:2	0/1:34,31:29:65:0.477:2
chr17	75878647	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:32:172:0.023:2	./.	./.
chr17	75879063	rs62078500	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,24:32:71:0.338:2	0/1:28,31:32:60:0.525:2	./.	./.	./.	./.	0/1:38,39:33:77:0.506:2
chr17	75879237	rs62078501	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,16:31:30:0.533:2	0/1:11,16:30:27:0.593:2	./.	./.	./.	./.	0/1:25,7:28:32:0.219:2
chr17	76046676	rs72894058	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,16:32:31:0.516:2	0/1:6,7:30:13:0.538:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	76060866	rs34293811	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,12:29:28:0.429:2	0/1:14,7:28:21:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	76060954	rs61730171	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,21:29:47:0.447:2	0/1:20,8:28:28:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	76113954	rs2613516	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,58:31:87:0.667:2	./.	./.	./.
chr17	76120164	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,56:33:114:0.491:2	./.	./.	./.	./.	./.
chr17	76121031	rs34712518	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,7:27:16:0.438:2
chr17	76121318	rs12449858	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,52:30:97:0.542:2	./.	./.	./.	./.	./.
chr17	76121864	rs2748427	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,9:28:9:1.00:2
chr17	76122657	rs371802601	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,6:32:55:0.109:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	76130066	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:32:146:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	76130575	rs7208422	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:27,26:31:53:0.491:2	0/1:6,9:31:15:0.600:2	0/1:9,3:30:12:0.250:2	./.	0/1:28,35:31:63:0.556:2	0/1:24,29:30:53:0.547:2	0/1:33,30:31:63:0.476:2	0/1:95,4:30:99:0.040:2	0/1:41,29:31:70:0.414:2	0/1:25,37:32:62:0.597:2	0/1:21,25:31:46:0.543:2
chr17	76131070	rs12452890	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,32:33:68:0.471:2	0/1:23,26:33:49:0.531:2	0/1:8,3:31:11:0.273:2	0/1:67,47:32:114:0.412:2	./.	0/1:46,46:32:93:0.500:2	0/1:85,38:32:123:0.309:2	./.	./.	0/1:0,76:32:76:1.00:2	0/1:39,49:33:88:0.557:2
chr17	76134237	rs11651675	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,47:29:135:0.348:2	./.	./.	./.	./.	./.	./.
chr17	76143009	rs7217374	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,12:30:37:0.324:2	0/1:18,16:30:34:0.471:2	./.	0/1:29,39:30:68:0.574:2	0/1:24,34:30:58:0.586:2	0/1:39,41:30:80:0.513:2	0/1:33,21:30:54:0.389:2	./.	./.	0/1:0,51:31:51:1.00:2	./.
chr17	76157266	rs4071641	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,7:30:18:0.389:2	0/1:84,53:30:137:0.387:2	0/1:103,73:30:176:0.415:2	0/1:78,55:31:133:0.414:2	0/1:80,82:30:162:0.506:2	./.	./.	0/1:0,93:30:93:1.00:2	0/1:60,48:30:108:0.444:2
chr17	76160446	rs140461997	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,47:32:110:0.427:2
chr17	76167047	rs1062668	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,60:32:142:0.423:2	0/1:82,64:31:146:0.438:2	./.	0/1:99,74:31:173:0.428:2	./.	./.	0/1:0,86:31:86:1.00:2	./.
chr17	76178748	rs1143697	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,6:28:23:0.261:2	./.	./.	./.	./.	0/1:13,5:30:18:0.278:2
chr17	76183043	rs1071664	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,42:28:96:0.438:2	./.	./.	./.	./.	0/1:23,7:27:30:0.233:2
chr17	76188747	rs186191233	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,53:32:54:0.981:2	0/1:1,30:32:31:0.968:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	76188753	rs12450989	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,36:30:78:0.462:2	./.	./.	./.	./.	0/1:43,57:30:100:0.570:2
chr17	76198587	rs72897838	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,10:29:26:0.385:2	./.	./.
chr17	76200965	rs72897843	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,42:31:98:0.429:2	./.	./.
chr17	76219591	rs2071214	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:33:28:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,25:32:25:1.00:2	0/1:10,8:31:18:0.444:2	0/1:0,17:32:17:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,17:32:17:1.00:2	0/1:1,32:32:33:0.970:2
chr17	76219685	rs17885521	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,39:30:72:0.542:2	./.	./.	./.	./.	./.	./.	./.
chr17	76395430	rs17845783	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,59:31:60:0.983:2	0/1:1,44:31:45:0.978:2	0/1:12,5:29:17:0.294:2	0/1:1,90:30:92:0.989:2	0/1:1,114:30:115:0.991:2	0/1:0,112:31:112:1.00:2	0/1:83,44:30:128:0.346:2	./.	0/1:73,42:32:115:0.365:2	0/1:44,35:31:79:0.443:2	0/1:55,43:31:98:0.439:2
chr17	76421443	rs1134541	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,32:31:78:0.410:2	./.	./.	./.	./.	./.	./.	./.
chr17	76421464	rs35422926	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:31,32:31:63:0.508:2	0/1:19,33:31:52:0.635:2	./.	./.	./.	./.	0/1:48,41:30:89:0.461:2	0/1:37,70:31:108:0.654:2	./.	./.	./.
chr17	76421467	rs36119275	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:31,31:31:62:0.500:2	0/1:20,31:32:51:0.608:2	./.	./.	./.	./.	0/1:51,41:32:92:0.446:2	0/1:42,69:33:111:0.622:2	./.	./.	./.
chr17	76421626	rs142772880	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,25:31:61:0.410:2	./.	./.	./.	./.	./.
chr17	76422599	rs35973257	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,7:32:9:0.778:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	76423097	rs2271613	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,36:32:79:0.456:2	0/1:20,26:32:46:0.565:2	0/1:0,5:29:5:1.00:2	0/1:58,44:31:102:0.431:2	0/1:1,75:30:76:0.987:2	0/1:0,125:31:125:1.00:2	0/1:52,49:31:101:0.485:2	0/1:68,57:31:126:0.456:2	0/1:0,87:32:87:1.00:2	0/1:1,101:31:102:0.990:2	0/1:1,93:31:94:0.989:2
chr17	76423151	rs3209030	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,50:32:82:0.617:2	./.	./.	./.	./.	./.	./.	./.
chr17	76433898	rs12941494	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:30:37:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,8:27:8:1.00:2	0/1:0,59:26:59:1.00:2	0/1:0,94:28:94:1.00:2	0/1:0,66:28:66:1.00:2	0/1:0,103:30:103:1.00:2	0/1:0,81:29:81:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,46:28:46:1.00:2
chr17	76433899	rs61742072	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:19,18:29:37:0.486:2	0/1:23,11:30:34:0.324:2	./.	./.	./.	./.	0/1:65,40:29:105:0.381:2	0/1:44,38:29:82:0.463:2	./.	./.	./.
chr17	76446872	rs35957404	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,33:31:61:0.541:2
chr17	76449505	rs2289751	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,32:28:70:0.457:2	0/1:32,25:28:57:0.439:2	0/1:6,5:30:11:0.455:2	0/1:63,61:29:124:0.492:2	0/1:75,81:29:156:0.519:2	0/1:52,90:29:142:0.634:2	0/1:91,72:29:164:0.442:2	0/1:61,72:29:133:0.541:2	./.	0/1:52,46:28:98:0.469:2	./.
chr17	76450714	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:33:9:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	76451830	rs111563325	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,48:31:92:0.522:2	./.	./.	./.
chr17	76455218	rs2289754	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,5:30:15:0.333:2	./.	0/1:45,44:31:89:0.494:2	./.	./.	./.	./.	0/1:31,33:30:64:0.516:2	0/1:35,48:31:83:0.578:2
chr17	76456017	rs34438166	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,50:32:123:0.410:2	./.	./.	0/1:54,53:32:107:0.495:2	./.	./.
chr17	76462770	rs691225	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,8:32:24:0.333:2	0/1:9,6:32:15:0.400:2	0/1:0,3:31:3:1.00:2	0/1:20,24:32:44:0.545:2	0/1:0,52:30:52:1.00:2	0/1:0,48:32:48:1.00:2	0/1:14,35:31:49:0.714:2	0/1:12,10:31:22:0.455:2	0/1:19,30:32:49:0.612:2	0/1:0,35:32:35:1.00:2	0/1:0,31:32:31:1.00:2
chr17	76464884	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,37:32:69:0.544:2	./.	./.	./.	./.
chr17	76464916	rs635874	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,24:32:39:0.615:2	./.	./.	./.	./.	./.
chr17	76471366	rs61746438	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,7:31:17:0.412:2	./.	./.	./.	0/1:90,73:31:163:0.448:2	./.	./.	./.	./.
chr17	76472768	rs7405830	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,16:32:31:0.516:2	./.	./.	0/1:82,74:31:156:0.474:2	./.	0/1:95,97:31:192:0.505:2	./.	./.	./.
chr17	76475574	rs78514572	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,23:31:39:0.590:2	./.
chr17	76476825	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,4:30:113:0.035:2	./.	./.	./.	./.	./.	./.
chr17	76481693	rs11872051	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:67,35:27:102:0.343:2	0/1:33,27:27:60:0.450:2	0/1:0,25:28:25:1.00:2	./.	0/1:3,180:28:183:0.984:2	0/1:91,82:28:173:0.474:2	0/1:110,81:28:191:0.424:2	0/1:2,191:28:193:0.990:2	0/1:94,61:29:156:0.394:2	0/1:1,100:27:101:0.990:2	0/1:3,98:28:101:0.970:2
chr17	76482432	rs691151	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:48,28:32:76:0.368:2	0/1:22,25:31:47:0.532:2	0/1:4,10:33:14:0.714:2	./.	0/1:1,117:31:118:0.992:2	0/1:1,136:32:137:0.993:2	0/1:86,74:32:160:0.463:2	0/1:3,148:32:151:0.980:2	0/1:61,56:32:117:0.479:2	0/1:0,81:32:81:1.00:2	0/1:0,91:31:91:1.00:2
chr17	76482435	rs61743860	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,4:31:15:0.267:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	76491127	rs691652	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,6:32:13:0.462:2	0/1:63,58:31:121:0.479:2	0/1:0,84:32:84:1.00:2	0/1:2,90:31:92:0.978:2	0/1:0,93:32:93:1.00:2	0/1:63,47:31:110:0.427:2	0/1:49,34:32:83:0.410:2	0/1:42,37:32:79:0.468:2	0/1:51,51:31:102:0.500:2
chr17	76491128	rs606944	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,7:31:13:0.538:2	0/1:63,58:32:121:0.479:2	0/1:0,83:33:83:1.00:2	0/1:2,90:33:92:0.978:2	0/1:0,93:33:93:1.00:2	0/1:62,47:32:109:0.431:2	0/1:49,34:33:83:0.410:2	0/1:42,37:32:79:0.468:2	0/1:51,51:33:102:0.500:2
chr17	76496492	rs2028734	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,19:29:39:0.487:2	0/1:0,46:29:46:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,44:29:44:1.00:2	0/1:23,21:29:44:0.477:2	0/1:23,21:28:44:0.477:2	0/1:14,13:29:27:0.481:2	0/1:30,15:29:45:0.333:2
chr17	76496532	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:31:65:0.062:2
chr17	76497920	rs690844	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,3:31:11:0.273:2	0/1:62,51:32:113:0.451:2	0/1:103,85:32:188:0.452:2	0/1:79,76:31:155:0.490:2	0/1:0,175:32:175:1.00:2	0/1:83,89:31:172:0.517:2	0/1:52,47:32:99:0.475:2	./.	0/1:60,44:32:104:0.423:2
chr17	76498692	rs930571	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:32:7:0.429:2	0/1:19,24:31:43:0.558:2	0/1:0,27:30:27:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,36:31:36:1.00:2	0/1:36,25:30:61:0.410:2	0/1:42,29:32:71:0.408:2	0/1:26,33:31:59:0.559:2	0/1:46,26:31:72:0.361:2
chr17	76502807	rs76449350	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,11:31:24:0.458:2	./.	./.	./.	./.	./.	./.
chr17	76503560	rs62073553	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:28,31:32:59:0.525:2	0/1:23,18:32:41:0.439:2	./.	0/1:53,30:31:83:0.361:2	./.	0/1:2,65:31:67:0.970:2	0/1:56,48:31:104:0.462:2	0/1:66,35:31:101:0.347:2	0/1:37,32:32:69:0.464:2	0/1:34,25:31:59:0.424:2	./.
chr17	76503593	rs9896398	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:21,28:29:49:0.571:2	0/1:15,18:29:33:0.545:2	0/1:2,3:32:5:0.600:2	./.	0/1:1,66:29:67:0.985:2	./.	./.	0/1:32,46:28:78:0.590:2	0/1:37,36:31:73:0.493:2	0/1:26,24:29:50:0.480:2	0/1:44,44:29:88:0.500:2
chr17	76503624	rs626439	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,40:31:76:0.526:2	./.	./.	0/1:37,46:31:83:0.554:2	./.	./.	./.	0/1:49,42:30:91:0.462:2
chr17	76510927	rs138375540	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,90:32:195:0.462:2	./.	./.	./.
chr17	76521121	rs17729253	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,25:33:25:1.00:2	0/1:0,13:32:13:1.00:2	./.	0/1:20,12:33:32:0.375:2	./.	0/1:14,21:32:35:0.600:2	0/1:18,13:31:31:0.419:2	0/1:29,14:30:43:0.326:2	0/1:13,17:34:30:0.567:2	0/1:20,7:33:27:0.259:2	./.
chr17	76522784	rs61744545	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:24,24:32:48:0.500:2	0/1:12,9:31:21:0.429:2	./.	./.	./.	./.	0/1:29,47:32:76:0.618:2	./.	./.	./.	./.
chr17	76522785	rs61744544	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:24,24:32:48:0.500:2	0/1:10,10:30:20:0.500:2	./.	0/1:22,42:31:64:0.656:2	./.	0/1:26,40:32:66:0.606:2	0/1:49,28:32:77:0.364:2	0/1:58,47:31:105:0.448:2	0/1:24,40:32:64:0.625:2	0/1:39,14:30:53:0.264:2	./.
chr17	76525565	rs4273108	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,64:33:127:0.504:2	0/1:44,37:33:81:0.457:2	0/1:13,7:33:20:0.350:2	0/1:1,165:33:166:0.994:2	0/1:1,188:32:189:0.995:2	0/1:0,168:32:168:1.00:2	0/1:109,89:32:198:0.449:2	0/1:102,89:33:191:0.466:2	0/1:96,92:34:188:0.489:2	0/1:2,134:32:136:0.985:2	0/1:91,67:32:158:0.424:2
chr17	76525759	rs61741523	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:33:8:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	76528591	rs11868065	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,27:29:66:0.415:2	0/1:21,16:29:37:0.432:2	0/1:7,3:30:10:0.300:2	0/1:0,93:29:93:1.00:2	0/1:1,76:30:77:0.987:2	0/1:54,53:30:107:0.495:2	0/1:67,39:29:106:0.368:2	0/1:1,119:30:121:0.992:2	0/1:43,45:29:88:0.511:2	0/1:2,72:30:74:0.973:2	0/1:45,54:30:100:0.545:2
chr17	76528790	rs11651537	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,27:33:52:0.519:2	0/1:13,17:32:30:0.567:2	0/1:0,8:32:8:1.00:2	0/1:31,45:32:76:0.592:2	0/1:1,61:32:62:0.984:2	0/1:30,35:32:65:0.538:2	0/1:35,55:33:90:0.611:2	0/1:0,81:32:81:1.00:2	0/1:32,32:33:64:0.500:2	0/1:0,73:33:73:1.00:2	0/1:43,32:32:76:0.427:2
chr17	76535869	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.	./.	./.	./.	./.
chr17	76535948	rs7221209	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,138:33:138:1.00:2	0/1:0,103:32:103:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,176:33:176:1.00:2	0/1:90,69:33:159:0.434:2	0/1:99,97:33:196:0.495:2	0/1:95,70:33:165:0.424:2	0/1:3,182:32:185:0.984:2	0/1:0,178:34:178:1.00:2	0/1:0,144:33:144:1.00:2	./.
chr17	76557006	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,4:31:31:0.129:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	76557862	rs894966	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,81:32:82:0.988:2	0/1:0,39:32:39:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,96:31:96:1.00:2	0/1:0,101:31:101:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,103:32:103:1.00:2	0/1:0,113:31:113:1.00:2	0/1:0,85:33:85:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,103:32:103:1.00:2
chr17	76557943	rs1108366	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:74,51:32:125:0.408:2	0/1:60,50:31:110:0.455:2	./.	./.	0/1:63,47:33:110:0.427:2	./.	0/1:72,53:31:125:0.424:2
chr17	76565341	rs72920970	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,13:32:13:1.00:2	0/1:9,12:32:21:0.571:2	0/1:15,8:33:23:0.348:2	0/1:8,3:31:11:0.273:2	0/1:0,15:32:15:1.00:2	0/1:17,8:31:25:0.320:2	0/1:0,30:32:30:1.00:2
chr17	76567707	rs894968	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:29:74:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,5:28:5:1.00:2	0/1:0,74:30:74:1.00:2	0/1:0,94:29:94:1.00:2	0/1:42,40:30:82:0.488:2	0/1:0,100:30:100:1.00:2	0/1:0,89:30:89:1.00:2	0/1:0,74:29:74:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,73:29:73:1.00:2
chr17	76571032	rs190167225	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,47:30:82:0.573:2	./.	./.	./.	./.
chr17	76671997	rs71385973	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,44:31:44:1.00:2	./.	./.	./.	./.	./.
chr17	76672002	rs1126607	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,10:28:31:0.323:2	0/1:11,16:29:27:0.593:2	0/1:0,3:27:3:1.00:2	0/1:16,19:30:35:0.543:2	0/1:8,10:30:18:0.556:2	./.	0/1:19,10:30:29:0.345:2	0/1:28,19:30:47:0.404:2	./.	./.	./.
chr17	76677111	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,4:31:23:0.174:2	./.	./.	./.
chr17	76799628	rs140332801	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:35:85:0.047:2	./.	./.
chr17	76799795	rs1057040	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,13:29:13:1.00:2	0/1:0,6:31:6:1.00:2	./.	0/1:21,13:31:34:0.382:2	0/1:2,20:30:22:0.909:2	./.	0/1:0,11:31:11:1.00:2	0/1:7,12:31:19:0.632:2	0/1:5,14:31:19:0.737:2	0/1:18,8:31:26:0.308:2	./.
chr17	76799860	rs3088040	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,13:31:13:1.00:2	0/1:0,3:29:3:1.00:2	./.	0/1:16,15:31:31:0.484:2	0/1:2,15:30:17:0.882:2	./.	0/1:0,14:31:14:1.00:2	0/1:18,15:30:33:0.455:2	0/1:4,10:30:14:0.714:2	0/1:16,8:29:24:0.333:2	./.
chr17	76799898	rs9302885	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:32:16:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,3:33:3:1.00:2	0/1:19,23:32:42:0.548:2	0/1:0,27:31:27:1.00:2	./.	0/1:0,30:32:30:1.00:2	0/1:27,20:31:47:0.426:2	0/1:9,13:32:22:0.591:2	0/1:9,12:32:21:0.571:2	./.
chr17	76802252	rs140290111	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,24:33:55:0.436:2	./.	./.	./.	0/1:37,29:33:66:0.439:2	./.	./.	./.
chr17	76803263	rs35820493	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,29:30:47:0.617:2	./.	./.
chr17	76809019	rs117840411	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,20:31:43:0.465:2	./.	./.	./.	./.
chr17	76814782	rs35273233	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:46,46:33:92:0.500:2	0/1:23,31:31:54:0.574:2	./.	./.	0/1:81,81:31:162:0.500:2	./.	0/1:69,59:32:129:0.461:2	./.	./.	0/1:71,57:31:128:0.445:2	./.
chr17	76817090	rs3744793	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,8:31:19:0.421:2	0/1:4,3:33:7:0.429:2	0/1:0,4:32:4:1.00:2	0/1:10,11:31:21:0.524:2	0/1:30,27:31:57:0.474:2	0/1:0,21:31:21:1.00:2	0/1:16,19:31:35:0.543:2	0/1:16,15:31:31:0.484:2	0/1:18,16:32:34:0.471:2	./.	0/1:3,14:32:17:0.824:2
chr17	76831519	rs34398293	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,39:31:68:0.574:2	./.
chr17	76867017	rs2277698	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,22:31:38:0.579:2	0/1:15,9:31:24:0.375:2	./.	./.	./.	0/1:1,41:31:42:0.976:2	./.	./.	./.	./.	0/1:41,22:32:63:0.349:2
chr17	76887302	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:34:166:0.024:2	./.	./.
chr17	76887432	rs111654265	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,16:30:51:0.314:2	./.	0/1:22,9:30:31:0.290:2	./.	./.	./.	./.
chr17	76970879	rs3744166	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,59:30:60:0.983:2	0/1:0,30:29:30:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,130:30:130:1.00:2	0/1:0,139:30:139:1.00:2	0/1:0,106:30:106:1.00:2	0/1:0,139:30:139:1.00:2	0/1:0,88:31:88:1.00:2	0/1:0,79:30:79:1.00:2	0/1:0,50:29:50:1.00:2
chr17	76973249	rs55974249	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,7:32:19:0.368:2	0/1:17,11:31:28:0.393:2	./.	./.	./.	./.	./.	./.
chr17	76989782	rs3803781	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,67:29:169:0.396:2	./.	./.	./.	./.
chr17	76993546	rs8077024	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,9:26:28:0.321:2	0/1:8,4:25:12:0.333:2	./.	./.	0/1:9,8:27:17:0.471:2	0/1:0,14:27:14:1.00:2
chr17	77040128	rs4789922	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:30:7:0.714:2	./.	0/1:85,69:29:154:0.448:2	./.	0/1:67,57:29:124:0.460:2	0/1:71,70:29:141:0.496:2	./.	./.	./.
chr17	77040185	rs4789853	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,30:32:70:0.429:2	0/1:30,29:30:59:0.492:2	./.	0/1:0,41:31:41:1.00:2	0/1:3,55:32:58:0.948:2	./.	./.	0/1:21,23:32:44:0.523:2
chr17	77042718	rs11077409	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:32:10:1.00:2	./.	0/1:26,24:31:50:0.480:2	./.	0/1:36,28:31:64:0.438:2	0/1:36,45:32:81:0.556:2	./.	./.	./.
chr17	77073566	rs3744181	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:33:4:0.750:2	./.	0/1:14,7:32:21:0.333:2	./.	0/1:13,18:32:31:0.581:2	0/1:20,7:32:27:0.259:2	./.	./.	./.
chr17	77073776	rs62063818	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,23:31:42:0.548:2	./.	./.	0/1:10,23:31:33:0.697:2	0/1:25,26:32:51:0.510:2	./.	./.	./.
chr17	77073941	rs56353542	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,5:27:19:0.263:2	./.	./.	0/1:8,19:30:27:0.704:2	0/1:11,16:29:27:0.593:2	./.	./.	./.
chr17	77075631	rs3744182	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,29:31:62:0.468:2
chr17	77075667	rs3744183	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:33:10:0.400:2	./.	0/1:70,36:31:106:0.340:2	./.	0/1:48,29:31:77:0.377:2	0/1:50,32:32:82:0.390:2	./.	./.	0/1:36,6:33:42:0.143:2
chr17	77075670	rs140106265	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:30:10:0.400:2	./.	0/1:70,36:30:106:0.340:2	./.	0/1:50,28:32:78:0.359:2	0/1:53,32:30:85:0.376:2	./.	./.	0/1:35,6:32:41:0.146:2
chr17	77075673	rs3744185	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:30:10:0.400:2	./.	0/1:72,35:29:107:0.327:2	./.	0/1:49,28:29:77:0.364:2	0/1:53,31:30:84:0.369:2	./.	./.	0/1:36,7:28:43:0.163:2
chr17	77075712	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,13:32:31:0.419:2	./.
chr17	77076302	rs62063824	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,17:32:37:0.459:2	./.	./.	0/1:9,13:33:22:0.591:2	0/1:20,19:32:39:0.487:2	./.	./.	./.
chr17	77076440	rs3744186	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,29:31:55:0.527:2	./.	0/1:39,24:32:63:0.381:2	0/1:47,16:30:63:0.254:2	0/1:17,26:31:43:0.605:2	./.	0/1:19,9:32:28:0.321:2
chr17	77078069	rs12937557	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,73:29:144:0.510:2
chr17	77078109	rs1317421	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,75:32:170:0.441:2	./.	./.	./.	0/1:5,169:32:174:0.971:2	./.	./.	0/1:88,80:32:168:0.476:2
chr17	77079576	rs61756761	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,75:31:171:0.441:2
chr17	77081788	rs4789879	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:31:10:0.600:2	./.	0/1:43,50:30:93:0.538:2	./.	0/1:43,52:30:95:0.547:2	./.	./.	./.	./.
chr17	77082174	rs117014247	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,26:32:52:0.500:2	./.	./.	./.	0/1:33,27:32:60:0.450:2	./.	./.	./.
chr17	77082189	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,34:31:70:0.486:2	./.	./.	./.
chr17	77082320	rs35037969	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,31:31:56:0.554:2	./.	./.	./.	./.	./.
chr17	77086939	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:29:104:0.038:2	./.	./.	./.
chr17	77087006	rs201471886	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:149,5:34:154:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr17	77093768	rs58352742	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,35:32:97:0.361:2	0/1:34,61:30:95:0.642:2	./.	0/1:0,85:31:85:1.00:2	0/1:0,102:32:102:1.00:2	./.	./.	0/1:40,39:31:79:0.494:2
chr17	77097646	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:33:119:0.034:2	./.	./.	./.	./.	./.
chr17	77097649	rs11651975	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,80:32:132:0.606:2	0/1:0,114:32:114:1.00:2	./.	0/1:53,47:31:100:0.470:2	./.	./.	./.	0/1:48,40:31:89:0.455:2
chr17	77111732	rs80198744	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,8:26:8:1.00:2	./.	0/1:5,3:29:8:0.375:2	./.	0/1:3,3:31:6:0.500:2
chr17	77704912	rs8074547	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,20:30:40:0.500:2	0/1:22,10:28:32:0.313:2	./.	./.	0/1:31,21:27:52:0.404:2	0/1:33,8:31:41:0.195:2	0/1:29,7:31:36:0.194:2	./.
chr17	77705045	rs8074728	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,34:28:66:0.515:2	0/1:36,16:29:52:0.308:2	./.	./.	0/1:40,22:30:62:0.355:2	0/1:28,22:30:50:0.440:2	0/1:17,17:29:34:0.500:2	./.
chr17	77709339	rs11657217	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,29:29:59:0.492:2	0/1:21,38:31:59:0.644:2	./.	./.	0/1:50,31:29:81:0.383:2	0/1:40,33:30:73:0.452:2	0/1:37,26:30:63:0.413:2	./.
chr17	77753191	rs35124694	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,63:32:150:0.420:2	./.	./.	./.	./.
chr17	77757671	rs150943047	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,20:31:40:0.500:2	./.	./.	./.	./.	./.	./.
chr17	77758484	rs3751956	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,9:30:23:0.391:2	0/1:15,5:32:20:0.250:2	0/1:6,5:30:11:0.455:2	0/1:0,35:30:35:1.00:2	0/1:17,23:31:40:0.575:2	0/1:0,36:30:36:1.00:2	0/1:1,37:30:38:0.974:2	0/1:21,25:30:46:0.543:2	./.	0/1:13,17:31:30:0.567:2	0/1:10,8:31:18:0.444:2
chr17	77758691	rs3751957	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,19:30:41:0.463:2	./.	./.	0/1:19,20:31:39:0.513:2	./.	./.	0/1:13,11:30:24:0.458:2
chr17	77768654	rs113547221	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:31:25:1.00:2	0/1:0,12:31:12:1.00:2	0/1:2,2:33:4:0.500:2	0/1:10,14:31:24:0.583:2	0/1:0,21:29:21:1.00:2	./.	0/1:9,9:30:18:0.500:2	0/1:6,6:32:12:0.500:2	0/1:0,24:32:24:1.00:2	0/1:3,12:31:15:0.800:2	0/1:5,7:29:12:0.583:2
chr17	77772068	rs9905914	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:32:10:0.300:2	0/1:1,6:31:7:0.857:2	./.	./.	./.	0/1:0,8:27:8:1.00:2	0/1:3,5:31:8:0.625:2	0/1:0,4:32:4:1.00:2
chr17	77808570	rs200337966	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:87,19:12:107:0.179:2	./.	./.	0/1:96,28:12:124:0.226:2	0/1:123,25:11:148:0.169:2	0/1:122,31:10:154:0.203:2	./.	0/1:110,27:10:137:0.197:2	./.	0/1:64,11:13:75:0.147:2	0/1:62,15:14:77:0.195:2
chr17	77808961	rs61737009	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,95:30:178:0.534:2	./.	./.	./.	./.	./.	./.
chr17	77924332	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,28:32:52:0.538:2	./.
chr17	77925393	rs35286723	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,13:31:30:0.433:2	./.
chr17	77926491	rs4889804	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:7,12:31:19:0.632:2	./.	0/1:5,3:30:8:0.375:2	./.	./.	./.	0/1:17,10:30:27:0.370:2	./.	./.	0/1:17,9:31:26:0.346:2	./.
chr17	77984141	rs35922784	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:26,28:30:54:0.519:2	0/1:24,18:32:42:0.429:2	./.	./.	0/1:17,47:30:64:0.734:2	./.	0/1:0,45:30:45:1.00:2	./.	./.	./.	0/1:0,55:29:55:1.00:2
chr17	78013724	rs2289527	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:29:45:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,62:29:62:1.00:2	0/1:0,57:28:57:1.00:2	0/1:0,68:28:68:1.00:2	0/1:0,55:28:55:1.00:2	0/1:0,67:29:67:1.00:2	0/1:0,47:28:47:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,35:29:35:1.00:2
chr17	78014024	rs2885349	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,12:33:32:0.375:2	./.	./.	./.	./.
chr17	78023722	rs2289531	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,38:32:81:0.469:2	./.	./.
chr17	78024046	rs61734951	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,4:33:47:0.085:2	./.	0/1:14,13:31:27:0.481:2	./.	./.	./.	./.
chr17	78032382	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,31:32:69:0.449:2	0/1:28,11:31:39:0.282:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	78055757	rs61749058	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,72:30:169:0.426:2	./.	0/1:91,82:30:173:0.474:2	./.	./.	./.	0/1:69,69:30:138:0.500:2	0/1:73,57:30:131:0.438:2
chr17	78055758	rs35578653	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,49:29:121:0.405:2	0/1:46,36:28:82:0.439:2	0/1:0,21:29:21:1.00:2	0/1:95,74:32:169:0.438:2	0/1:1,156:29:157:0.994:2	0/1:1,169:31:170:0.994:2	./.	0/1:3,171:30:174:0.983:2	0/1:99,82:30:182:0.453:2	0/1:0,137:31:137:1.00:2	0/1:72,61:32:133:0.459:2
chr17	78059821	rs117203086	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,20:31:48:0.417:2	./.	./.	./.	./.
chr17	78061444	rs374928230	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:32:140:0.029:2	./.	./.	./.
chr17	78063635	rs118143944	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,40:31:78:0.513:2	./.	./.	./.	./.	./.
chr17	78069148	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:32:119:0.034:2
chr17	78071052	rs12952612	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:29:23:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,7:30:7:1.00:2	0/1:19,16:30:35:0.457:2	0/1:0,29:31:29:1.00:2	0/1:0,39:30:39:1.00:2	0/1:1,32:30:33:0.970:2	0/1:0,49:30:49:1.00:2	0/1:14,15:32:29:0.517:2	0/1:21,8:27:29:0.276:2	./.
chr17	78073355	rs56407805	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,16:29:46:0.348:2	./.	0/1:13,16:26:29:0.552:2	./.	./.	0/1:21,13:29:34:0.382:2	./.	./.
chr17	78073562	rs2304854	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:24,14:30:38:0.368:2	0/1:12,8:31:20:0.400:2	./.	0/1:19,7:32:26:0.269:2	./.	0/1:28,23:30:51:0.451:2	0/1:0,34:29:34:1.00:2	./.	0/1:14,23:31:37:0.622:2	./.	./.
chr17	78078656	rs1800299	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:32:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	78078709	rs1800300	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,3:35:3:1.00:2	0/1:26,12:33:38:0.316:2	0/1:0,38:32:38:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,35:33:35:1.00:2	0/1:23,12:33:35:0.343:2	0/1:11,9:32:21:0.450:2	./.
chr17	78079597	rs1042393	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:29:22:1.00:2	0/1:0,17:28:17:1.00:2	0/1:0,4:30:4:1.00:2	0/1:26,15:27:41:0.366:2	0/1:1,17:30:18:0.944:2	0/1:0,22:29:22:1.00:2	0/1:0,19:28:19:1.00:2	0/1:0,23:29:23:1.00:2	0/1:25,11:31:36:0.306:2	0/1:11,8:27:19:0.421:2	./.
chr17	78079643	rs1800301	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:14,21:32:35:0.600:2	0/1:15,8:32:23:0.348:2	./.	0/1:21,22:33:43:0.512:2	./.	0/1:28,21:31:49:0.429:2	0/1:16,9:32:25:0.360:2	./.	./.	./.	./.
chr17	78079669	rs1042395	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:30:32:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,12:29:12:1.00:2	0/1:25,24:30:49:0.490:2	0/1:0,29:31:29:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,34:30:34:1.00:2	0/1:25,15:31:40:0.375:2	0/1:21,16:30:37:0.432:2	./.
chr17	78081661	rs1800303	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,14:31:30:0.467:2	./.	./.
chr17	78082504	rs1800304	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,51:30:53:0.962:2	0/1:0,25:32:25:1.00:2	0/1:0,8:31:8:1.00:2	0/1:17,19:31:36:0.528:2	0/1:0,64:30:64:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,63:31:63:1.00:2	0/1:47,29:32:76:0.382:2	0/1:20,19:30:39:0.487:2	./.
chr17	78083791	rs1800305	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,52:32:91:0.571:2	./.	./.
chr17	78084769	rs1042396	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:41,31:33:72:0.431:2	0/1:18,16:32:34:0.471:2	0/1:0,10:32:10:1.00:2	./.	0/1:1,52:32:53:0.981:2	0/1:19,28:31:47:0.596:2	./.	0/1:1,72:32:73:0.986:2	./.	0/1:28,23:33:52:0.451:2	./.
chr17	78087109	rs1800310	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:21,30:28:51:0.588:2	0/1:14,12:28:26:0.462:2	./.	0/1:35,36:30:71:0.507:2	./.	0/1:45,26:30:71:0.366:2	0/1:30,19:30:49:0.388:2	./.	./.	./.	./.
chr17	78091405	rs1126690	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:31:49:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,11:29:11:1.00:2	0/1:54,36:31:90:0.400:2	0/1:0,71:31:71:1.00:2	0/1:0,79:30:79:1.00:2	0/1:0,98:31:98:1.00:2	0/1:2,86:30:88:0.977:2	0/1:62,58:31:120:0.483:2	0/1:29,34:31:63:0.540:2	./.
chr17	78092063	rs1042397	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:32:45:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,3:30:3:1.00:2	0/1:36,27:32:63:0.429:2	0/1:1,50:31:51:0.980:2	0/1:0,57:31:57:1.00:2	0/1:4,65:32:69:0.942:2	0/1:1,52:31:53:0.981:2	0/1:27,26:32:53:0.491:2	0/1:20,29:32:49:0.592:2	./.
chr17	78113832	rs2241886	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:15,15:31:30:0.500:2	0/1:7,9:32:16:0.563:2	0/1:3,4:31:7:0.571:2	./.	0/1:26,17:31:43:0.395:2	0/1:15,14:31:29:0.483:2	./.	0/1:2,62:31:64:0.969:2	./.	./.	./.
chr17	78157995	rs4889990	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,9:31:35:0.257:2	0/1:21,10:31:31:0.323:2	0/1:8,6:31:14:0.429:2	0/1:34,28:31:62:0.452:2	./.	0/1:2,55:30:57:0.965:2	./.	./.	./.	./.	./.
chr17	78162291	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:31:79:0.051:2	./.	./.	./.
chr17	78165202	rs74951924	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,37:32:80:0.463:2	0/1:22,19:32:41:0.463:2	./.	./.	./.	./.	./.	./.	0/1:47,31:32:78:0.397:2	./.	./.
chr17	78169004	rs62074378	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,6:31:26:0.231:2	0/1:10,6:33:16:0.375:2	./.	./.	./.	./.	./.	./.	0/1:20,18:31:38:0.474:2	./.	./.
chr17	78169109	rs144710573	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,10:32:25:0.400:2	./.	./.	./.	./.
chr17	78171944	rs2066964	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,35:33:74:0.473:2	./.	./.	0/1:25,12:33:37:0.324:2	0/1:1,51:32:52:0.981:2	./.	./.	0/1:0,23:34:23:1.00:2
chr17	78176192	rs147578051	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,61:31:110:0.555:2	./.	./.	./.	./.	./.	./.
chr17	78177695	rs9905662	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,60:29:121:0.496:2	./.	./.
chr17	78178893	rs11652075	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,13:32:26:0.500:2	0/1:12,6:32:18:0.333:2	./.	0/1:0,27:29:27:1.00:2	0/1:14,10:31:24:0.417:2	0/1:0,25:30:25:1.00:2	0/1:0,21:31:21:1.00:2	0/1:1,35:31:36:0.972:2	./.	0/1:9,10:28:19:0.526:2	0/1:1,21:30:22:0.955:2
chr17	78179004	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:32:44:0.091:2	./.	./.	./.	./.
chr17	78184393	rs7503034	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,14:30:29:0.483:2	0/1:7,13:31:20:0.650:2	./.	0/1:16,24:30:40:0.600:2	0/1:24,5:28:29:0.172:2	./.	./.	./.	0/1:10,18:31:28:0.643:2	0/1:8,21:29:29:0.724:2	./.
chr17	78185997	rs138927823	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:34:113:0.035:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	78199668	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,27:29:67:0.409:2	./.	./.	./.	./.	./.
chr17	78210776	rs3924207	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,46:32:130:0.354:2	./.	./.	./.	./.	./.	./.	./.
chr17	78215559	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:33:82:0.049:2
chr17	78215566	rs12942462	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,22:32:43:0.512:2	0/1:18,10:32:28:0.357:2	./.	./.	./.	./.	./.	./.	0/1:27,41:33:68:0.603:2	./.	./.
chr17	78219065	rs7406843	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,61:30:61:1.00:2	0/1:0,47:31:47:1.00:2	./.	./.	0/1:0,146:30:146:1.00:2	0/1:75,49:30:124:0.395:2	./.	./.	0/1:0,100:31:100:1.00:2	0/1:38,51:31:89:0.573:2	./.
chr17	78225167	rs140131205	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,51:33:114:0.447:2	./.
chr17	78261730	rs17853714	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,28:31:62:0.452:2	./.	./.	./.	0/1:34,38:32:72:0.528:2	0/1:44,26:32:70:0.371:2	./.
chr17	78261805	rs7215243	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,4:34:13:0.308:2	./.
chr17	78262161	rs17857135	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,22:28:42:0.524:2	0/1:18,28:28:46:0.609:2	./.
chr17	78263486	rs17853989	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,33:29:64:0.516:2	./.	./.	./.	0/1:45,33:30:78:0.423:2	0/1:47,21:29:68:0.309:2	./.
chr17	78263514	rs17853713	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,34:30:62:0.548:2	./.	./.	./.	0/1:42,36:32:78:0.462:2	0/1:50,21:31:71:0.296:2	./.
chr17	78268557	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:30:80:0.050:2	./.	./.	./.	./.	./.
chr17	78268634	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:33:145:0.028:2	./.	./.	./.	./.
chr17	78272294	rs72849841	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,50:33:111:0.455:2	./.	0/1:61,58:32:119:0.487:2	./.	./.	./.	./.	./.
chr17	78293145	rs148356224	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,35:33:67:0.522:2	./.	./.
chr17	78293189	rs55996424	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,42:31:81:0.519:2	0/1:48,56:31:104:0.538:2	./.	0/1:32,36:32:68:0.529:2	./.
chr17	78319136	rs9674961	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:31:103:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,135:31:135:1.00:2	0/1:63,57:30:120:0.475:2	0/1:66,69:31:135:0.511:2	0/1:0,127:31:128:1.00:2	0/1:74,56:31:130:0.431:2	0/1:56,62:32:118:0.525:2	./.	0/1:0,110:32:110:1.00:2
chr17	78319380	rs4890012	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,42:30:91:0.462:2	0/1:20,21:31:41:0.512:2	0/1:0,11:30:11:1.00:2	0/1:2,95:30:97:0.979:2	0/1:53,33:30:86:0.384:2	0/1:50,54:30:104:0.519:2	0/1:2,84:30:86:0.977:2	0/1:66,57:30:123:0.463:2	0/1:60,53:31:114:0.469:2	./.	0/1:0,118:31:118:1.00:2
chr17	78319805	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,6:30:157:0.038:2	./.	./.
chr17	78319886	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,83:31:171:0.485:2
chr17	78321157	rs61600413	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,24:31:48:0.500:2	0/1:10,6:32:16:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	78321507	rs147834926	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,16:30:50:0.320:2	./.	./.	./.	./.	./.	./.	./.
chr17	78321658	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:33:70:0.057:2
chr17	78321792	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,42:31:80:0.525:2
chr17	78327358	rs7216493	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:31:80:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,12:31:12:1.00:2	0/1:1,106:30:107:0.991:2	0/1:80,64:29:144:0.444:2	0/1:61,37:30:98:0.378:2	0/1:0,100:30:100:1.00:2	0/1:68,48:31:116:0.414:2	0/1:48,43:33:91:0.473:2	0/1:57,37:29:94:0.394:2	0/1:0,78:30:78:1.00:2
chr17	78335610	rs61741791	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,27:32:60:0.450:2	./.	0/1:30,33:31:63:0.524:2	./.	./.	./.	./.	./.
chr17	78337058	rs35332090	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:18,20:34:38:0.526:2	0/1:15,9:33:24:0.375:2	./.	0/1:29,23:33:52:0.442:2	./.	0/1:30,20:32:50:0.400:2	./.	./.	./.	./.	./.
chr17	78337584	rs61740658	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:26,23:33:49:0.469:2	0/1:12,10:33:22:0.455:2	./.	0/1:37,32:33:69:0.464:2	./.	0/1:43,32:32:75:0.427:2	./.	./.	./.	./.	./.
chr17	78338329	rs117705614	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,29:32:51:0.569:2	./.
chr17	78346829	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:32:88:0.045:2	./.	./.	./.	./.	./.
chr17	78346830	rs116948489	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,37:32:90:0.411:2	./.	0/1:42,45:32:87:0.517:2	./.	./.	./.	./.	./.
chr17	78346870	rs62077764	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:31:7:0.571:2	./.	./.	./.	0/1:30,31:30:61:0.508:2	0/1:39,37:31:76:0.487:2	./.	./.	0/1:23,27:31:50:0.540:2
chr17	78354661	rs4889848	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:32:42:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,3:31:3:1.00:2	0/1:47,41:31:89:0.466:2	0/1:0,68:31:68:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,81:32:81:1.00:2	0/1:40,38:32:78:0.487:2	0/1:0,48:32:48:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,51:32:51:1.00:2
chr17	78355494	rs61745599	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,19:32:45:0.422:2	0/1:36,28:32:64:0.438:2	./.	./.	0/1:14,15:32:29:0.517:2
chr17	78356830	rs61741961	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,26:33:51:0.510:2	./.	./.
chr17	78357528	rs367968390	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,20:30:50:0.400:2	./.	./.	./.	./.	./.	./.	./.
chr17	78363054	rs8072774	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,3:32:14:0.214:2	./.	./.	./.	0/1:102,61:32:163:0.374:2	0/1:83,59:32:142:0.415:2	./.	./.	0/1:64,69:33:134:0.519:2
chr17	78363847	rs3185057	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:34,41:32:75:0.547:2	0/1:27,16:32:43:0.372:2	./.	0/1:73,53:33:126:0.421:2	./.	0/1:57,54:32:111:0.486:2	./.	./.	./.	./.	./.
chr17	78389450	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,6:33:114:0.053:2	./.	./.	./.	./.
chr17	78389478	rs35549084	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,59:32:117:0.504:2	./.	./.
chr17	78395734	rs34933300	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,14:32:42:0.333:2	./.	./.	./.	0/1:15,9:33:24:0.375:2	./.	./.
chr17	78396004	rs41298712	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,28:31:58:0.483:2	./.
chr17	78396031	rs184854277	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,20:30:34:0.606:2	./.	./.	./.	./.	./.	./.
chr17	78409975	rs12939348	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,5:26:60:0.083:2	./.	./.	./.	./.	./.
chr17	78444658	rs12943620	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:28:3:1.00:2	0/1:0,61:29:61:1.00:2	0/1:37,26:29:63:0.413:2	0/1:0,48:28:48:1.00:2	0/1:26,36:28:62:0.581:2	0/1:0,61:29:61:1.00:2	0/1:39,26:29:65:0.400:2	0/1:0,49:28:49:1.00:2	0/1:0,43:28:43:1.00:2
chr17	78444679	rs28364735	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,4:32:79:0.051:2	./.	./.	./.	./.	./.	./.	0/1:35,26:32:61:0.426:2
chr17	78445702	rs1131609	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:33:5:1.00:2	0/1:27,13:32:40:0.325:2	0/1:35,31:32:66:0.470:2	0/1:1,41:32:42:0.976:2	0/1:22,18:30:40:0.450:2	0/1:0,65:31:65:1.00:2	0/1:20,32:32:52:0.615:2	0/1:0,27:32:27:1.00:2	0/1:0,38:32:38:1.00:2
chr17	78519519	rs61750765	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,34:34:78:0.436:2
chr17	78599562	rs17848685	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,23:29:23:1.00:2	./.	./.	0/1:81,87:30:169:0.518:2	./.	0/1:86,90:30:176:0.511:2	./.	0/1:69,57:30:126:0.452:2	0/1:75,69:30:144:0.479:2
chr17	78681662	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,4:31:112:0.036:2	./.	./.	./.	./.	./.	./.
chr17	78820329	rs3751945	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,45:29:47:1.00:2	0/1:0,28:31:28:1.00:2	./.	0/1:42,37:30:79:0.468:2	./.	0/1:66,42:31:108:0.389:2	0/1:73,82:30:155:0.529:2	0/1:3,103:30:106:0.972:2	./.	0/1:46,38:30:84:0.452:2	0/1:19,21:29:40:0.525:2
chr17	78820374	rs2589156	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,34:31:81:0.420:2	./.	0/1:69,55:32:124:0.444:2	./.	0/1:45,26:33:71:0.366:2	./.	0/1:17,21:32:38:0.553:2
chr17	78854223	rs2289759	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:50,40:33:90:0.444:2	0/1:26,28:32:54:0.519:2	./.	0/1:79,48:33:127:0.378:2	0/1:0,148:32:149:1.00:2	0/1:82,76:33:158:0.481:2	0/1:97,84:33:181:0.464:2	./.	./.	0/1:65,56:33:122:0.463:2	0/1:45,47:32:92:0.511:2
chr17	78857700	rs61753566	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,29:32:52:0.558:2	./.	./.	./.	./.	./.	./.	./.
chr17	78865546	rs2289764	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,32:31:67:0.478:2	./.	./.	./.	./.	0/1:41,34:31:75:0.453:2	0/1:33,26:29:59:0.441:2	./.
chr17	78865630	rs2289765	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,26:31:49:0.531:2	./.	./.	./.	./.	0/1:22,20:31:42:0.476:2	./.	./.
chr17	78896529	rs2271603	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,17:32:17:1.00:2	./.	./.	./.	./.	0/1:7,5:32:12:0.417:2	./.	0/1:9,6:31:15:0.400:2
chr17	78919558	rs1567962	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,20:33:40:0.500:2	0/1:17,14:32:31:0.452:2	./.	./.	0/1:0,55:32:55:1.00:2	0/1:28,25:32:53:0.472:2	0/1:40,23:32:63:0.365:2	0/1:48,41:32:89:0.461:2	0/1:26,38:33:64:0.594:2	0/1:16,17:33:33:0.515:2	0/1:21,18:31:39:0.462:2
chr17	78921117	rs4969231	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:29:10:1.00:2	./.	0/1:37,36:31:73:0.493:2	./.	./.	./.	0/1:1,67:32:68:0.985:2	./.	./.
chr17	78935197	rs9899178	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,43:30:45:0.956:2	0/1:16,21:31:37:0.568:2	0/1:8,15:30:23:0.652:2	0/1:5,15:30:20:0.750:2	./.	./.	./.	0/1:0,18:29:18:1.00:2
chr17	78938134	rs55677452	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,8:31:26:0.308:2	./.	./.	./.
chr17	79009061	rs8068528	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,27:32:58:0.466:2	./.	./.	./.	./.	./.	./.	0/1:21,8:29:29:0.276:2
chr17	79089590	rs4969391	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,17:30:37:0.459:2	./.	./.
chr17	79093275	rs8082016	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,5:31:7:0.714:2	./.	./.	./.	./.	./.
chr17	79093343	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	79093822	rs36000545	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:34:6:0.500:2	0/1:2,4:34:6:0.667:2	0/1:2,6:33:8:0.750:2	./.	0/1:2,6:33:8:0.750:2	0/1:2,8:34:10:0.800:2	./.	0/1:1,6:32:7:0.857:2
chr17	79095144	rs8073904	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:31:35:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,62:31:62:1.00:2	0/1:24,23:32:47:0.489:2	0/1:0,40:32:40:1.00:2	0/1:0,21:31:21:1.00:2
chr17	79095629	rs7503604	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:32:9:1.00:2	./.	0/1:4,4:32:8:0.500:2	0/1:0,2:32:2:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,6:31:6:1.00:2	./.	./.
chr17	79099706	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:33:174:0.023:2	./.	./.	./.	./.
chr17	79102330	rs11871062	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,41:28:83:0.494:2	0/1:22,14:29:36:0.389:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	79163649	rs2292182	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:22,15:31:37:0.405:2	0/1:17,14:31:31:0.452:2	0/1:0,11:31:11:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:9,8:30:17:0.471:2
chr17	79164488	rs117616373	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,4:29:7:0.571:2	./.	./.	./.	./.	./.	./.
chr17	79166136	rs113590232	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,42:31:42:1.00:2	./.	0/1:5,16:30:21:0.762:2	./.
chr17	79166201	rs2279916	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	79166384	rs3744150	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	79169641	rs61741559	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:32:9:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	79169670	rs61741549	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,20:31:43:0.465:2
chr17	79170576	rs1542961	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,23:30:34:0.676:2	0/1:1,5:27:6:0.833:2	./.	./.	0/1:31,13:29:44:0.295:2	0/1:7,31:31:38:0.816:2	0/1:13,13:29:27:0.500:2	./.	./.	0/1:8,10:31:18:0.556:2	0/1:4,7:29:11:0.636:2
chr17	79170789	rs201201809	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,62:32:102:0.608:2	./.	./.
chr17	79171967	rs2659016	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:25:31:1.00:2	0/1:0,16:24:16:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,31:26:31:1.00:2	0/1:0,25:26:25:1.00:2	0/1:0,42:28:42:1.00:2	0/1:0,10:28:10:1.00:2	0/1:0,18:28:18:1.00:2	0/1:0,23:28:23:1.00:2	0/1:0,19:25:19:1.00:2	0/1:0,10:22:10:1.00:2
chr17	79172722	rs142545284	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,24:33:46:0.522:2	./.	./.
chr17	79173184	rs2659015	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:33:35:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,55:33:55:1.00:2	0/1:0,15:34:15:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,43:33:43:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,18:32:18:1.00:2
chr17	79173224	rs2725419	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:31:45:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,76:30:76:1.00:2	0/1:0,18:31:18:1.00:2	0/1:2,56:30:58:0.966:2	0/1:0,45:30:45:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,26:30:26:1.00:2
chr17	79174221	rs2466773	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:28:26:1.00:2	0/1:0,19:29:19:1.00:2	0/1:0,13:28:13:1.00:2	0/1:0,35:29:35:1.00:2	0/1:0,39:28:39:1.00:2	0/1:0,55:28:55:1.00:2	0/1:1,20:28:21:0.952:2	0/1:2,48:29:50:0.960:2	0/1:0,62:29:62:1.00:2	0/1:0,35:28:35:1.00:2	0/1:0,27:27:27:1.00:2
chr17	79182778	rs62075318	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,5:30:8:0.625:2	0/1:1,48:33:49:0.980:2	0/1:32,21:32:53:0.396:2	0/1:22,31:32:54:0.585:2	0/1:29,15:32:44:0.341:2	0/1:4,70:32:74:0.946:2	0/1:0,53:33:53:1.00:2	0/1:22,24:33:46:0.522:2	0/1:1,67:32:68:0.985:2
chr17	79202956	rs2048057	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,11:29:22:0.500:2	0/1:2,4:27:6:0.667:2	./.	0/1:0,16:29:16:1.00:2	0/1:9,10:27:19:0.526:2	0/1:13,13:29:26:0.500:2	0/1:9,4:27:13:0.308:2	0/1:2,15:29:17:0.882:2	0/1:0,5:29:5:1.00:2	0/1:2,10:29:12:0.833:2	0/1:8,4:29:12:0.333:2
chr17	79203166	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,67:31:103:0.650:2	./.	./.	./.	./.	./.	./.
chr17	79205736	rs11655759	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:51,33:32:84:0.393:2	0/1:21,18:30:39:0.462:2	0/1:8,5:31:13:0.385:2	./.	0/1:37,49:30:86:0.570:2	0/1:47,30:31:77:0.390:2	0/1:40,43:31:83:0.518:2	./.	./.	0/1:33,22:31:55:0.400:2	0/1:34,37:31:71:0.521:2
chr17	79207236	rs56161914	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,16:30:17:0.941:2	./.	./.	0/1:48,32:27:80:0.400:2	./.	./.	./.	./.	./.
chr17	79220224	rs2725405	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,13:34:22:0.591:2	0/1:3,10:31:13:0.769:2	./.	0/1:0,16:31:16:1.00:2	0/1:10,6:32:16:0.375:2	0/1:4,7:32:11:0.636:2	0/1:9,7:32:16:0.438:2	0/1:0,12:31:12:1.00:2	0/1:3,13:35:16:0.813:2	0/1:5,3:34:8:0.375:2	0/1:3,3:29:6:0.500:2
chr17	79225026	rs67972063	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,4:30:51:0.078:2	./.	./.	./.	./.	0/1:58,4:31:62:0.065:2	0/1:28,7:27:35:0.200:2	./.
chr17	79225056	rs113562695	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,3:35:57:0.053:2	./.	./.	./.	./.	./.	0/1:37,5:34:42:0.119:2	./.
chr17	79225092	rs66961966	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,8:33:48:0.167:2	./.	./.	./.	./.	0/1:52,11:31:63:0.175:2	0/1:32,11:33:44:0.256:2	./.
chr17	79226005	rs117437659	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:28:6:0.667:2
chr17	79226049	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,4:32:23:0.174:2	./.	./.	./.	./.	./.
chr17	79226264	rs35546507	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,6:28:34:0.182:2	./.	./.	./.	./.	./.	./.
chr17	79244802	rs2292184	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:43,24:29:67:0.358:2	0/1:12,27:28:39:0.692:2	./.	0/1:52,56:30:108:0.519:2	0/1:78,45:28:123:0.366:2	./.	0/1:51,60:28:111:0.541:2	./.	0/1:0,99:29:99:1.00:2	0/1:0,61:28:61:1.00:2	0/1:48,55:28:103:0.534:2
chr17	79246381	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,17:33:28:0.607:2	./.	./.
chr17	79255998	rs10871494	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:40,40:30:80:0.500:2	0/1:28,18:30:46:0.391:2	./.	./.	./.	./.	0/1:80,100:29:180:0.556:2	./.	0/1:66,71:30:137:0.518:2	./.	0/1:31,47:30:78:0.603:2
chr17	79258688	rs61740871	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,30:32:71:0.423:2	./.	./.
chr17	79278514	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,21:31:49:0.429:2	./.	./.	./.	./.	./.
chr17	79278775	rs113085388	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,24:30:54:0.444:2	./.	./.	./.	./.	./.
chr17	79278810	rs2048058	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:32:14:0.286:2	./.	./.	0/1:37,43:31:80:0.538:2	./.	./.	./.	./.	./.
chr17	79279017	rs2056439	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,22:32:44:0.500:2	0/1:9,10:32:19:0.526:2	./.	0/1:9,13:33:22:0.591:2	0/1:20,15:32:35:0.429:2	0/1:21,14:33:35:0.400:2	./.	./.	0/1:18,13:31:31:0.419:2	0/1:10,15:33:25:0.600:2	./.
chr17	79287477	rs9916085	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:5,8:31:13:0.615:2	0/1:11,15:32:26:0.577:2	./.	./.	./.	./.	./.	./.	./.	0/1:11,15:32:26:0.577:2	./.
chr17	79402514	rs12600846	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,36:31:112:0.321:2	./.	0/1:72,55:31:127:0.433:2	./.	./.	./.
chr17	79409189	rs12952981	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	0/1:3,3:28:6:0.500:2	./.	./.	./.	./.	./.	./.
chr17	79409309	rs12938890	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.
chr17	79409710	rs12943867	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,14:32:14:1.00:2	0/1:0,8:32:8:1.00:2	./.	0/1:4,5:32:9:0.556:2	0/1:3,4:31:7:0.571:2	./.	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.
chr17	79411512	rs187826058	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:24:6:0.667:2	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.
chr17	79412096	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:33:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr17	79412465	rs116255905	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,9:26:17:0.529:2	./.	./.
chr17	79414307	rs7213444	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,4:30:4:1.00:2	./.	0/1:0,3:33:3:1.00:2	0/1:0,4:33:4:1.00:2	./.	./.	./.	0/1:0,4:34:4:1.00:2	0/1:1,3:35:4:0.750:2	0/1:0,5:33:5:1.00:2	./.
chr17	79414634	rs61745233	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,16:33:29:0.552:2	./.	./.
chr17	79414804	rs61739649	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,11:31:39:0.282:2	./.	./.
chr17	79418770	rs61746096	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,16:32:30:0.533:2	./.	0/1:21,20:31:41:0.488:2	./.	./.	./.	./.	./.
chr17	79419025	rs35572189	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:33:2:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr17	79422367	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:31:60:0.067:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	79424516	rs12601317	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:29:28:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,2:31:2:1.00:2	0/1:1,31:29:32:0.969:2	0/1:0,21:30:21:1.00:2	0/1:24,16:30:40:0.400:2	./.	0/1:0,40:29:40:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,22:30:22:1.00:2	./.
chr17	79424537	rs34224936	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,17:30:27:0.630:2	0/1:10,4:33:14:0.286:2	0/1:0,2:31:2:1.00:2	0/1:13,19:32:32:0.594:2	./.	./.	./.	./.	0/1:17,8:32:25:0.320:2	0/1:12,9:32:21:0.429:2	./.
chr17	79428601	rs61738790	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,5:30:10:0.500:2	./.	0/1:5,3:30:8:0.375:2	./.	./.	./.	./.
chr17	79428877	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.	./.	./.	./.	./.
chr17	79429852	rs8746	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,86:31:162:0.531:2	./.	./.	./.	./.	./.
chr17	79478007	rs1135989	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:32:77:1.00:2	0/1:0,47:32:47:1.00:2	0/1:2,10:30:12:0.833:2	0/1:0,118:33:118:1.00:2	0/1:96,95:32:191:0.497:2	./.	./.	./.	./.	0/1:0,90:32:90:1.00:2	./.
chr17	79478019	rs1139405	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:30:70:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,101:30:101:1.00:2	0/1:3,170:30:173:0.983:2	0/1:1,138:30:139:0.993:2	0/1:1,151:30:152:0.993:2	./.	0/1:0,101:31:101:1.00:2	0/1:0,88:31:88:1.00:2	0/1:0,98:30:98:1.00:2
chr17	79479088	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,13:33:43:0.302:2
chr17	79479115	rs11549220	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,26:31:50:0.531:2	./.	./.	./.
chr17	79495914	rs189437871	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	./.	./.
chr17	79496295	rs34567655	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,33:29:75:0.440:2	./.	./.	./.
chr17	79507856	rs11552307	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:24:14:0.286:2	./.	./.	./.	./.	./.	./.	./.
chr17	79508400	rs14422	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,18:28:18:1.00:2	0/1:0,13:30:13:1.00:2	./.	0/1:0,49:29:49:1.00:2	0/1:46,18:28:64:0.281:2	0/1:0,39:30:39:1.00:2	0/1:27,24:29:51:0.471:2	0/1:0,62:30:62:1.00:2	0/1:0,29:29:29:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,35:30:35:1.00:2
chr17	79511135	rs8077430	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,47:29:47:1.00:2	0/1:0,23:30:23:1.00:2	./.	0/1:0,63:30:63:1.00:2	0/1:60,55:30:115:0.478:2	0/1:51,29:30:80:0.363:2	0/1:39,48:29:88:0.552:2	./.	0/1:28,27:31:55:0.491:2	0/1:1,41:31:42:0.976:2	0/1:0,61:30:61:1.00:2
chr17	79514015	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,3:32:44:0.068:2	./.	./.	./.	./.
chr17	79514129	rs11552304	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,28:32:28:1.00:2	0/1:4,4:30:8:0.500:2	0/1:0,78:32:78:1.00:2	0/1:9,38:31:47:0.809:2	0/1:25,45:31:70:0.643:2	0/1:18,39:32:57:0.684:2	0/1:48,4:33:52:0.077:2	0/1:28,38:32:66:0.576:2	0/1:1,64:32:65:0.985:2	0/1:0,43:31:43:1.00:2
chr17	79514671	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:31:110:0.036:2	./.	./.	./.	./.
chr17	79517455	rs202147413	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,6:18:30:0.200:2	./.	./.
chr17	79517476	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,4:31:33:0.121:2
chr17	79519200	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr17	79519210	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2
chr17	79526402	rs4073997	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,65:32:146:0.445:2	./.	./.	./.	./.	./.
chr17	79556087	rs34070114	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,57:31:122:0.467:2	./.	./.	./.
chr17	79564304	rs62074671	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,37:31:58:0.638:2	0/1:12,19:32:31:0.613:2	./.	./.	0/1:26,40:31:66:0.606:2	0/1:32,32:31:64:0.500:2	./.	0/1:43,50:32:93:0.538:2	0/1:36,40:32:76:0.526:2	0/1:31,36:32:67:0.537:2	./.
chr17	79571751	rs112716983	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:52,40:31:92:0.435:2	0/1:24,14:32:38:0.368:2	./.	./.	0/1:41,30:31:71:0.423:2	./.	./.	./.	./.	0/1:41,26:31:67:0.388:2	./.
chr17	79589242	rs6565604	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,34:33:46:0.739:2	0/1:12,14:32:26:0.538:2	./.	./.	0/1:12,18:32:30:0.600:2	0/1:2,59:32:61:0.967:2	0/1:21,4:30:25:0.160:2	0/1:0,51:33:51:1.00:2	0/1:25,27:32:52:0.519:2	0/1:24,24:32:48:0.500:2	0/1:0,59:32:59:1.00:2
chr17	79596811	rs9894429	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:75,76:34:151:0.503:2	0/1:28,39:32:67:0.582:2	./.	./.	0/1:62,71:32:133:0.534:2	0/1:0,157:32:157:1.00:2	0/1:156,4:33:160:0.025:2	0/1:1,130:33:131:0.992:2	0/1:93,71:33:164:0.433:2	0/1:75,67:33:142:0.472:2	0/1:1,144:33:145:0.993:2
chr17	79609410	rs7406219	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,14:31:29:0.483:2	./.	0/1:20,25:31:45:0.556:2	./.	./.	0/1:0,36:30:36:1.00:2
chr17	79612161	rs6565616	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,26:32:58:0.448:2	./.	0/1:25,39:32:64:0.609:2	./.	./.	0/1:0,54:32:54:1.00:2
chr17	79612333	rs6565617	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,5:30:12:0.417:2	./.	0/1:9,8:30:17:0.471:2	./.	./.	0/1:0,8:31:8:1.00:2
chr17	79612397	rs6420484	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,7:32:13:0.538:2	./.	./.	0/1:14,7:34:21:0.333:2	0/1:0,36:30:36:1.00:2	0/1:0,12:33:12:1.00:2	0/1:24,7:30:31:0.226:2	0/1:0,9:32:9:1.00:2	0/1:13,5:33:18:0.278:2	0/1:9,13:33:22:0.591:2	0/1:0,4:31:4:1.00:2
chr17	79612413	rs7210043	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,3:30:16:0.188:2	./.	0/1:7,3:31:10:0.300:2	./.	./.	0/1:0,6:25:6:1.00:2
chr17	79612443	rs7210193	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,3:32:21:0.143:2	./.	0/1:4,4:31:8:0.500:2	./.	./.	0/1:0,11:29:11:1.00:2
chr17	79612644	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:111,4:34:115:0.035:2	./.	./.	./.	./.	./.	./.
chr17	79614951	rs79350765	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	0/1:10,15:32:25:0.600:2	./.	./.	./.	./.	./.	./.
chr17	79620219	rs181137206	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,17:30:37:0.459:2	./.	./.	./.	./.
chr17	79634774	rs61742303	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:16,8:32:24:0.333:2	0/1:4,3:32:7:0.429:2	./.	0/1:10,8:30:18:0.444:2	./.	0/1:12,9:32:21:0.429:2	0/1:1,5:32:6:0.833:2	0/1:15,12:31:27:0.444:2	0/1:4,7:33:11:0.636:2	0/1:8,7:31:15:0.467:2	./.
chr17	79634813	rs11546632	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:15,6:32:21:0.286:2	0/1:3,4:32:7:0.571:2	./.	0/1:10,6:33:16:0.375:2	./.	0/1:16,7:32:23:0.304:2	0/1:4,4:29:8:0.500:2	0/1:14,5:30:19:0.263:2	0/1:2,8:33:10:0.800:2	0/1:8,7:30:15:0.467:2	./.
chr17	79637314	rs201889148	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,28:31:67:0.418:2	./.	./.	./.	./.
chr17	79637349	rs10438817	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:28:43:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,55:29:55:1.00:2	0/1:0,45:28:45:1.00:2	0/1:0,50:28:50:1.00:2	0/1:0,53:27:53:1.00:2	0/1:0,38:27:38:1.00:2	0/1:26,31:28:57:0.544:2	0/1:0,34:27:34:1.00:2	0/1:0,44:28:44:1.00:2
chr17	79637367	rs7226091	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,17:33:42:0.405:2	0/1:14,6:32:20:0.300:2	./.	0/1:27,23:32:50:0.460:2	0/1:20,20:32:40:0.500:2	0/1:30,12:33:42:0.286:2	0/1:24,31:33:55:0.564:2	0/1:16,21:33:37:0.568:2	0/1:23,24:34:47:0.511:2	0/1:11,12:34:23:0.522:2	./.
chr17	79638805	rs11150805	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,27:31:46:0.587:2	0/1:19,18:32:37:0.486:2	./.	0/1:43,42:32:85:0.494:2	0/1:40,28:30:68:0.412:2	0/1:24,30:31:54:0.556:2	0/1:41,32:31:73:0.438:2	0/1:46,28:31:74:0.378:2	0/1:29,41:32:70:0.586:2	0/1:32,30:33:62:0.484:2	./.
chr17	79639684	rs61742298	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,32:31:52:0.615:2	./.	./.	./.	./.	./.	./.	./.
chr17	79650828	rs8066889	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,5:27:10:0.500:2	./.	./.	./.
chr17	79650856	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2
chr17	79661874	rs35078912	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,69:32:135:0.511:2	./.	./.	./.	./.	./.	./.	./.
chr17	79663931	rs8070488	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,7:27:19:0.368:2	0/1:4,5:27:9:0.556:2	./.	0/1:22,12:27:34:0.353:2	0/1:11,6:26:17:0.353:2	0/1:21,16:27:37:0.432:2	./.	0/1:15,11:25:26:0.423:2	0/1:24,14:29:38:0.368:2	0/1:16,20:27:36:0.556:2	./.
chr17	79667612	rs138665031	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:29:9:0.444:2	./.	./.	./.	./.	./.	./.	./.
chr17	79682051	rs3204270	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,45:32:68:0.662:2	0/1:24,25:31:49:0.510:2	0/1:25,46:32:71:0.648:2	0/1:26,24:32:50:0.480:2	./.	./.
chr17	79682558	rs2072700	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,7:31:25:0.280:2	0/1:9,14:29:23:0.609:2	./.	0/1:31,34:29:65:0.523:2	0/1:49,25:30:74:0.338:2	0/1:33,25:29:58:0.431:2	0/1:51,43:29:94:0.457:2	0/1:0,64:29:64:1.00:2	0/1:27,17:30:44:0.386:2	0/1:15,24:28:39:0.615:2	./.
chr17	79803101	rs1130674	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,33:31:59:0.559:2	0/1:22,23:30:45:0.511:2	./.	./.	./.	./.	./.
chr17	79805134	rs2070871	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:31:15:0.600:2	./.	0/1:50,37:31:87:0.425:2	0/1:61,51:31:112:0.455:2	./.	./.	./.	./.	./.
chr17	79813121	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:31:100:0.040:2	./.
chr17	79818260	rs11558886	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,10:32:18:0.556:2	0/1:9,6:27:15:0.400:2	0/1:3,7:31:10:0.700:2	./.	./.	./.	./.	./.
chr17	79827200	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:32:94:0.043:2	./.	./.
chr17	79827803	rs184897031	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,45:31:91:0.495:2	./.	./.	./.	./.
chr17	79857230	rs141853377	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:36:68:0.059:2	./.
chr17	79872241	rs1879569	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:32:37:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,99:32:100:1.00:2	0/1:0,89:32:90:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,76:34:76:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,58:32:58:1.00:2
chr17	79875538	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:30:74:0.054:2	./.	./.	./.	./.
chr17	79891147	rs61747618	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:30:88:1.00:2	0/1:0,57:28:57:1.00:2	0/1:0,11:31:11:1.00:2	0/1:2,160:30:162:0.988:2	0/1:3,193:30:196:0.985:2	0/1:0,178:30:178:1.00:2	0/1:1,194:30:195:0.995:2	0/1:5,183:30:188:0.973:2	0/1:0,136:31:136:1.00:2	0/1:0,126:30:126:1.00:2	0/1:0,125:29:126:1.00:2
chr17	79899272	rs4796856	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:31:3:1.00:2	0/1:0,5:33:6:1.00:2	./.	./.	./.	0/1:0,7:32:7:1.00:2	0/1:0,2:34:2:1.00:2	./.	0/1:0,2:31:2:1.00:2
chr17	79899495	rs4796854	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,11:32:11:1.00:2	0/1:0,9:33:9:1.00:2	0/1:3,9:32:12:0.750:2	0/1:0,17:31:17:1.00:2	./.	0/1:0,17:31:17:1.00:2	./.	0/1:0,5:30:5:1.00:2	0/1:0,28:32:28:1.00:2	./.	./.
chr17	79899698	rs4796852	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:32:63:1.00:2	0/1:0,37:32:37:1.00:2	0/1:7,4:31:11:0.364:2	0/1:2,58:32:60:0.967:2	./.	0/1:2,64:32:66:0.970:2	./.	0/1:0,76:32:76:1.00:2	0/1:1,69:33:70:0.986:2	./.	0/1:28,29:33:57:0.509:2
chr17	79899710	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:85,5:27:90:0.056:2	./.	0/1:40,6:20:46:0.130:2	./.	./.	./.	./.
chr17	79914848	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,48:31:114:0.425:2	./.	./.	./.	./.	./.
chr17	79941511	rs11539917	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,45:31:73:0.616:2	./.	./.	./.	./.	./.
chr17	79954544	rs8074498	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,10:31:14:0.714:2	0/1:4,7:32:11:0.636:2	0/1:1,3:29:4:0.750:2	0/1:1,18:31:19:0.947:2	./.	0/1:0,22:31:22:1.00:2	0/1:11,9:32:20:0.450:2	0/1:0,17:32:17:1.00:2	0/1:0,37:32:37:1.00:2	./.	0/1:11,13:33:24:0.542:2
chr17	79974731	rs13087	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,29:28:81:0.358:2	0/1:23,17:28:40:0.425:2	0/1:5,7:29:12:0.583:2	0/1:0,82:29:82:1.00:2	./.	0/1:0,49:28:49:1.00:2	0/1:44,17:29:61:0.279:2	0/1:1,65:28:66:0.985:2	0/1:52,26:30:78:0.333:2	./.	0/1:34,5:27:39:0.128:2
chr17	79974815	rs143008575	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,30:29:57:0.526:2	./.	./.	./.	./.	./.
chr17	79980756	rs3934983	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,10:31:11:0.909:2	0/1:0,5:31:5:1.00:2	./.	0/1:0,11:32:11:1.00:2	./.	0/1:0,25:30:25:1.00:2	0/1:7,15:30:22:0.682:2	0/1:0,20:32:20:1.00:2	0/1:4,10:29:14:0.714:2	./.	./.
chr17	79986156	rs72861736	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,28:31:71:0.394:2	./.	./.
chr17	79988195	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,4:30:25:0.160:2	./.	./.	./.	./.	./.
chr17	79991663	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,44:28:95:0.473:2	./.	./.
chr17	79994600	rs61739740	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,21:31:54:0.389:2	./.	./.
chr17	80006957	rs12948507	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:33:75:1.00:2	0/1:0,40:33:40:1.00:2	0/1:1,18:32:19:0.947:2	0/1:59,54:34:113:0.478:2	0/1:104,85:33:189:0.450:2	0/1:87,54:32:141:0.383:2	0/1:0,147:33:147:1.00:2	0/1:1,110:33:111:0.991:2	0/1:53,55:34:108:0.509:2	0/1:0,76:33:76:1.00:2	0/1:52,35:33:87:0.402:2
chr17	80007887	rs9915228	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,39:32:42:0.929:2	0/1:1,19:32:20:0.950:2	0/1:0,3:25:3:1.00:2	0/1:43,27:33:70:0.386:2	0/1:42,17:32:59:0.288:2	0/1:32,27:32:59:0.458:2	0/1:0,59:32:59:1.00:2	0/1:0,79:32:79:1.00:2	0/1:41,43:33:84:0.512:2	0/1:0,48:32:48:1.00:2	0/1:25,21:33:46:0.457:2
chr17	80008392	rs9916764	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,5:32:5:1.00:2	0/1:46,53:31:99:0.535:2	0/1:67,73:31:140:0.521:2	0/1:42,48:31:90:0.533:2	0/1:5,112:31:117:0.957:2	0/1:3,118:31:121:0.975:2	0/1:51,52:32:103:0.505:2	0/1:0,55:32:55:1.00:2	0/1:29,24:32:53:0.453:2
chr17	80009156	rs28552909	T	G,C	.	PASS	AC=6,3;AF=0.222,0.111;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0/2:28:11:1.00:2	./.	0/1:32:5:1.00:2	0/1:32:19:0.158:2	0/2:30:13:0.250:2	./.	0/1:33:4:1.00:2	0/1:28:3:1.00:2	0/1:31:14:0.500:2	0/2:29:12:0.917:2	0/1:32:8:0.750:2
chr17	80012449	rs11077966	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:4,6:32:10:0.600:2	0/1:4,6:31:10:0.600:2	./.	./.	0/1:3,4:30:7:0.571:2	./.	0/1:3,4:30:7:0.571:2	./.	./.	0/1:0,20:32:20:1.00:2	./.
chr17	80012769	rs11655185	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	./.	0/1:11,9:30:20:0.450:2	./.	0/1:2,9:31:11:0.818:2	./.	./.	0/1:0,13:31:13:1.00:2	./.
chr17	80019207	rs11542331	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:26,17:30:43:0.395:2	0/1:19,9:30:28:0.321:2	./.	./.	0/1:17,14:29:31:0.452:2	./.	0/1:17,6:30:23:0.261:2	./.	./.	0/1:18,12:27:30:0.400:2	./.
chr17	80039481	rs1140616	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,30:31:76:0.395:2	0/1:1,62:30:63:0.984:2	./.	0/1:29,29:31:58:0.500:2	./.	./.	./.
chr17	80040450	rs145688025	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.
chr17	80041231	rs140221463	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,29:32:80:0.363:2	./.	./.	./.
chr17	80041466	rs2229425	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,30:30:68:0.441:2	./.	./.	./.	./.	./.	./.
chr17	80042139	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,5:32:196:0.026:2	./.	./.	./.	./.	./.
chr17	80043739	rs2229422	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.
chr17	80044211	rs41283365	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,32:29:73:0.438:2	./.	./.	./.	./.	./.
chr17	80045086	rs4485435	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:29:39:1.00:2	0/1:0,21:29:21:1.00:2	0/1:1,3:30:4:0.750:2	0/1:6,13:29:19:0.684:2	./.	./.	./.	./.	./.	0/1:0,21:30:21:1.00:2	0/1:0,8:30:8:1.00:2
chr17	80046134	rs138286707	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,5:30:8:0.625:2	./.
chr17	80051183	rs2228309	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,50:29:112:0.446:2	0/1:95,59:29:154:0.383:2	0/1:2,134:30:136:0.985:2	./.	0/1:78,50:28:128:0.391:2	0/1:58,47:30:105:0.448:2	./.	./.
chr17	80059596	rs13949	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,14:31:37:0.378:2	0/1:12,6:33:18:0.333:2	0/1:1,18:32:19:0.947:2	./.	0/1:18,19:31:37:0.514:2	0/1:17,24:32:41:0.585:2	./.	./.
chr17	80065349	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,5:32:86:0.058:2	./.	./.
chr17	80071244	rs7211808	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,34:30:73:0.466:2	0/1:48,46:29:94:0.489:2	0/1:0,78:30:78:1.00:2	./.	0/1:47,36:31:83:0.434:2	0/1:35,29:31:64:0.453:2	./.	./.
chr17	80071450	rs11653662	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,60:31:106:0.566:2	./.	./.	./.	./.	./.
chr17	80085633	rs11077969	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,6:28:11:0.545:2	0/1:25,32:28:57:0.561:2	0/1:30,30:28:60:0.500:2	0/1:0,66:28:66:1.00:2	./.	0/1:48,42:28:90:0.467:2	0/1:36,45:29:81:0.556:2	./.	./.
chr17	80085648	rs78509330	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,38:31:74:0.514:2	0/1:49,42:31:91:0.462:2
chr17	80085703	rs7213172	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,10:29:19:0.526:2	0/1:51,50:31:101:0.495:2	0/1:43,63:31:106:0.594:2	0/1:0,94:31:94:1.00:2	./.	0/1:68,73:31:141:0.518:2	0/1:60,70:33:130:0.538:2	./.	./.
chr17	80086386	rs7406162	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,17:28:56:0.309:2	0/1:43,16:30:59:0.271:2	0/1:1,48:29:49:0.980:2	./.	0/1:35,25:28:61:0.417:2	0/1:29,24:28:53:0.453:2	./.	./.
chr17	80086389	rs7406163	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,18:29:56:0.321:2	0/1:48,18:28:66:0.273:2	0/1:1,48:29:49:0.980:2	./.	0/1:36,26:29:62:0.419:2	0/1:30,25:29:55:0.455:2	./.	./.
chr17	80086395	rs4625783	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,20:31:60:0.333:2	0/1:47,27:30:74:0.365:2	0/1:1,60:31:61:0.984:2	./.	0/1:41,30:31:71:0.423:2	0/1:31,30:31:61:0.492:2	./.	./.
chr17	80103737	rs6502066	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,37:30:39:0.949:2	0/1:0,17:30:17:1.00:2	0/1:2,4:29:6:0.667:2	0/1:16,34:29:50:0.680:2	0/1:34,33:29:67:0.493:2	./.	0/1:1,68:29:69:0.986:2	0/1:48,36:28:84:0.429:2	0/1:19,26:30:45:0.578:2	0/1:0,37:30:37:1.00:2	0/1:0,40:29:40:1.00:2
chr17	80136418	rs7209474	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:32:27:1.00:2	0/1:1,18:32:19:0.947:2	0/1:0,4:32:4:1.00:2	0/1:30,21:32:51:0.412:2	0/1:42,32:31:74:0.432:2	./.	0/1:0,53:31:53:1.00:2	0/1:25,27:32:52:0.519:2	0/1:28,22:33:50:0.440:2	./.	0/1:0,39:32:39:1.00:2
chr17	80151881	rs4789722	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:32:7:1.00:2	0/1:0,7:32:7:1.00:2	./.	./.	0/1:13,5:29:18:0.278:2	./.	0/1:0,8:31:8:1.00:2	0/1:4,9:31:13:0.692:2	0/1:8,5:32:13:0.385:2	0/1:0,8:29:8:1.00:2	0/1:0,4:32:4:1.00:2
chr17	80159566	rs8072670	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,141:33:141:1.00:2	0/1:1,108:32:109:0.991:2	0/1:3,14:34:17:0.824:2	0/1:95,70:33:165:0.424:2	0/1:89,59:32:148:0.399:2	0/1:91,69:32:160:0.431:2	0/1:0,105:33:105:1.00:2	0/1:82,54:32:136:0.397:2	0/1:74,74:33:148:0.500:2	0/1:1,119:32:120:0.992:2	0/1:0,90:32:90:1.00:2
chr17	80159665	rs11653797	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,70:29:134:0.522:2	./.	./.	./.	./.	./.
chr17	80195582	rs9303026	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:32:43:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,19:31:20:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,20:31:20:1.00:2
chr17	80206871	rs17849769	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,34:32:49:0.694:2	./.
chr17	80206877	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,30:31:76:0.405:2	./.	./.	./.	./.	./.	./.	./.
chr17	80210381	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,68:31:158:0.430:2
chr17	80273234	rs113733263	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,28:29:44:0.636:2	./.	./.	./.	./.	./.
chr17	80280050	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,4:30:71:0.056:2	./.	./.	./.	./.	./.	./.
chr17	80280865	rs11077986	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,48:33:49:0.980:2	0/1:0,34:32:34:1.00:2	0/1:0,4:32:4:1.00:2	0/1:39,48:33:87:0.552:2	0/1:66,61:32:127:0.480:2	0/1:47,55:32:102:0.539:2	0/1:53,61:32:114:0.535:2	./.	0/1:38,36:33:74:0.486:2	0/1:0,67:33:67:1.00:2	0/1:0,69:32:69:1.00:2
chr17	80320561	rs7502620	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,30:31:49:0.612:2	0/1:31,22:31:53:0.415:2	./.	./.	./.	./.	./.
chr17	80320855	rs72856174	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:19,19:32:38:0.500:2	0/1:7,8:33:15:0.533:2	./.	./.	./.	./.	./.	./.	./.	0/1:18,20:31:38:0.526:2	./.
chr17	80321546	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:33:158:0.025:2	./.	./.
chr17	80332251	rs11654140	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2
chr17	80350331	rs11903	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,61:28:167:0.365:2	./.	./.	./.	./.	./.
chr17	80352303	rs62079523	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:31:7:0.571:2	0/1:38,37:30:75:0.493:2	0/1:24,40:31:64:0.625:2	./.	./.	./.	./.	0/1:23,27:29:50:0.540:2	0/1:0,76:30:76:1.00:2
chr17	80373452	rs4789769	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,12:32:16:0.750:2	./.	./.	./.	0/1:3,5:28:8:0.625:2	0/1:7,7:29:14:0.500:2	0/1:1,6:30:7:0.857:2	./.	0/1:11,5:29:16:0.313:2	./.	./.
chr17	80377690	rs1141463	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:74,73:30:147:0.497:2	0/1:40,32:30:72:0.444:2	0/1:15,8:29:23:0.348:2	./.	0/1:70,99:29:169:0.586:2	0/1:107,63:29:170:0.371:2	0/1:94,78:30:172:0.453:2	./.	0/1:2,192:30:194:0.990:2	./.	0/1:122,74:29:196:0.378:2
chr17	80391684	rs4789773	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:54,45:29:99:0.455:2	0/1:34,32:29:66:0.485:2	0/1:13,6:29:19:0.316:2	./.	0/1:104,75:30:179:0.419:2	0/1:2,139:29:141:0.986:2	0/1:102,76:30:179:0.427:2	./.	0/1:0,159:30:159:1.00:2	./.	0/1:69,45:29:115:0.395:2
chr17	80394530	rs4789777	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,17:30:30:0.567:2	0/1:8,6:32:14:0.429:2	./.	./.	0/1:13,20:32:33:0.606:2	0/1:0,49:32:49:1.00:2	0/1:15,14:31:29:0.483:2	./.	0/1:0,36:33:36:1.00:2	./.	0/1:8,13:32:21:0.619:2
chr17	80401946	rs2306758	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,29:30:64:0.468:2
chr17	80404555	rs72857481	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:13,11:29:24:0.458:2	0/1:5,9:31:14:0.643:2	./.	./.	./.	./.	./.	./.	./.	0/1:26,12:30:38:0.316:2	./.
chr17	80442722	rs3829567	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,42:33:104:0.404:2
chr17	80445942	rs200355609	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,19:14:93:0.204:2	./.	./.	./.	0/1:109,14:15:123:0.114:2	0/1:86,14:13:100:0.140:2	./.	./.
chr17	80477918	rs146516291	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,15:30:28:0.536:2	./.	./.	./.	./.	./.
chr17	80477985	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	80545038	rs185405224	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,78:33:175:0.446:2	./.	./.	./.	./.
chr17	80545076	rs35870621	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,87:32:182:0.478:2	./.	./.	./.	./.	./.	./.
chr17	80559272	rs35832203	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,60:31:106:0.566:2	./.	./.	./.	./.	./.	./.
chr17	80579609	rs74895287	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,41:29:94:0.436:2	./.	./.	./.	./.	./.	./.	./.
chr17	80585094	rs2291393	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,13:30:19:0.684:2	./.	./.	./.	0/1:0,19:32:19:1.00:2	./.	0/1:23,8:32:31:0.258:2
chr17	80615831	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:31:65:0.062:2	./.
chr17	80622442	rs7211237	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,48:31:96:0.500:2
chr17	80656356	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	0/1:1,2:33:3:0.667:2
chr17	80656365	rs201456802	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2
chr17	80656378	rs199586588	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,4:31:20:0.200:2	./.	./.	./.	./.	./.	./.
chr17	80674643	rs2250000	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,8:33:8:1.00:2	0/1:0,5:26:5:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,2:28:2:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,2:30:2:1.00:2
chr17	80684451	rs9902326	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,58:31:122:0.479:2	./.	./.	./.
chr17	80684784	rs142718764	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,17:31:41:0.415:2	./.	./.	./.
chr17	80696410	rs2253149	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:30:25:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,4:29:4:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,26:29:26:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,12:26:12:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,16:30:16:1.00:2
chr17	80708601	rs1056534	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,13:28:13:1.00:2	0/1:0,3:32:3:1.00:2	./.	0/1:0,28:30:28:1.00:2	0/1:10,8:30:18:0.444:2	0/1:15,13:30:28:0.464:2	0/1:0,30:31:30:1.00:2	0/1:19,15:30:34:0.441:2	0/1:20,9:32:29:0.310:2	0/1:0,9:31:9:1.00:2	0/1:9,20:31:29:0.690:2
chr17	80708607	rs149413139	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,13:29:29:0.448:2	./.	./.	./.
chr17	80710178	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.
chr17	80788465	rs12938126	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:32:7:0.571:2	./.	0/1:75,38:30:113:0.336:2	0/1:55,44:30:99:0.444:2	./.	0/1:63,55:29:118:0.466:2	0/1:50,31:30:81:0.383:2	./.	0/1:45,37:30:82:0.451:2
chr17	80788492	rs12948179	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:29:6:0.667:2	./.	0/1:60,29:29:89:0.326:2	0/1:54,38:30:92:0.413:2	./.	0/1:62,46:28:108:0.426:2	0/1:50,29:31:79:0.367:2	./.	0/1:38,35:29:73:0.479:2
chr17	80788899	rs76229161	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:33:155:0.026:2
chr17	80789269	rs34188981	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,28:31:62:0.452:2	./.	./.	./.	./.	./.	./.
chr17	80789628	rs8074277	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,9:28:16:0.563:2	0/1:50,45:28:95:0.474:2	./.	0/1:38,41:29:79:0.519:2	./.	./.	./.	0/1:0,86:28:86:1.00:2	./.
chr17	80842024	rs112420156	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,62:31:127:0.492:2	./.	./.	./.	./.	./.	./.
chr17	80858537	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:33:111:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr17	80863857	rs2292971	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:29:10:0.300:2	./.	0/1:0,162:30:162:1.00:2	./.	0/1:91,89:29:180:0.494:2	0/1:95,91:29:186:0.489:2	0/1:73,61:30:134:0.455:2	./.	0/1:38,50:29:88:0.568:2
chr17	80867153	rs72861530	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,61:33:121:0.508:2	./.	./.	./.	./.	0/1:54,46:34:100:0.460:2	./.	./.
chr17	80887244	rs1127986	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,5:30:6:0.833:2	./.	0/1:31,31:30:62:0.500:2	./.	./.	0/1:29,18:29:47:0.383:2	0/1:25,22:29:47:0.468:2	./.	0/1:11,5:27:16:0.313:2
chr17	80895933	rs3785522	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,85:31:86:0.988:2	0/1:0,50:32:50:1.00:2	0/1:9,8:32:17:0.471:2	0/1:80,45:31:125:0.360:2	0/1:0,127:31:127:1.00:2	0/1:100,52:31:152:0.342:2	0/1:0,52:32:52:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,119:33:119:1.00:2	./.	0/1:0,70:31:70:1.00:2
chr17	80899281	rs9390	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,13:33:13:1.00:2	0/1:0,10:32:10:1.00:2	./.	0/1:6,16:31:22:0.727:2	0/1:6,13:32:19:0.684:2	./.	0/1:18,16:31:34:0.471:2	0/1:1,39:32:40:0.975:2	0/1:0,24:33:24:1.00:2	./.	0/1:0,11:31:11:1.00:2
chr17	80904844	rs7225887	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:32:10:0.500:2	./.	0/1:43,48:31:91:0.527:2	./.	./.	0/1:40,33:32:73:0.452:2	0/1:25,31:32:56:0.554:2	./.	0/1:28,27:31:56:0.491:2
chr17	80923536	rs4986144	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,7:31:16:0.438:2	./.	./.	./.	./.	./.
chr17	80992932	rs16940609	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:30,43:29:73:0.589:2	0/1:26,23:30:49:0.469:2	./.	0/1:58,43:28:101:0.426:2	./.	./.	0/1:44,35:29:79:0.443:2	0/1:60,31:28:91:0.341:2	0/1:52,51:28:103:0.495:2	0/1:92,4:29:96:0.042:2	./.
chr17	81006387	rs1143006	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:51,51:31:102:0.500:2	0/1:28,22:31:50:0.440:2	./.	./.	./.	./.	0/1:89,44:32:133:0.331:2	0/1:96,74:32:170:0.435:2	./.	0/1:54,66:32:120:0.550:2	./.
chr17	81006629	rs7406119	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:50,66:32:116:0.569:2	0/1:44,45:32:89:0.506:2	./.	0/1:92,76:32:168:0.452:2	./.	./.	0/1:85,54:31:139:0.388:2	0/1:107,81:32:188:0.431:2	0/1:95,65:33:160:0.406:2	./.	./.
chr17	81009622	rs59686903	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2
chr17	81009636	rs57923322	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2
chr17	81043039	rs9908756	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,12:30:55:0.218:2	0/1:20,4:30:24:0.167:2	0/1:0,2:31:2:1.00:2	0/1:11,15:31:26:0.577:2	./.	0/1:21,10:30:31:0.323:2	0/1:1,18:30:19:0.947:2	0/1:0,30:30:30:1.00:2	./.	0/1:0,21:30:21:1.00:2	./.
chr17	81050982	rs7501742	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:12,11:33:23:0.478:2	0/1:3,5:33:8:0.625:2	./.	0/1:9,14:31:23:0.609:2	./.	0/1:12,13:33:25:0.520:2	0/1:1,29:33:30:0.967:2	0/1:19,19:29:38:0.500:2	0/1:26,19:32:45:0.422:2	0/1:0,28:32:28:1.00:2	0/1:8,12:29:20:0.600:2
chr18	166819	rs563155	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:16,13:30:29:0.448:2	0/1:13,6:28:19:0.316:2	./.	./.	0/1:12,13:30:25:0.520:2	./.	0/1:11,6:30:17:0.353:2	./.	0/1:15,25:30:40:0.625:2	./.	0/1:37,30:30:67:0.448:2
chr18	225081	rs71352928	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,12:32:32:0.375:2	./.	./.	./.
chr18	252559	rs657138	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:31:67:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,8:28:8:1.00:2	0/1:1,79:31:80:0.988:2	0/1:0,71:31:71:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,98:31:98:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,73:31:73:1.00:2	0/1:0,83:31:83:1.00:2
chr18	264012	rs652504	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:63,45:33:108:0.417:2	0/1:52,33:32:85:0.388:2	./.	./.	0/1:35,31:33:66:0.470:2	./.	0/1:52,35:33:87:0.402:2	./.	0/1:74,61:33:135:0.452:2	./.	0/1:84,67:33:151:0.444:2
chr18	331717	rs149622251	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,83:33:171:0.485:2	./.	./.
chr18	334742	rs17857498	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,32:30:76:0.421:2	0/1:30,18:31:48:0.375:2	./.	0/1:92,4:30:97:0.042:2	0/1:68,29:30:97:0.299:2	0/1:2,98:31:100:0.980:2	0/1:108,44:31:152:0.289:2	0/1:65,36:31:101:0.356:2	./.	0/1:60,44:31:104:0.423:2	0/1:44,36:32:80:0.450:2
chr18	334758	rs2305026	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,26:27:68:0.382:2	0/1:29,17:28:46:0.370:2	0/1:0,3:30:3:1.00:2	0/1:0,80:28:80:1.00:2	0/1:1,75:29:76:0.987:2	0/1:0,78:28:78:1.00:2	0/1:91,31:28:122:0.254:2	0/1:0,78:29:78:1.00:2	0/1:55,37:29:92:0.402:2	0/1:51,34:27:85:0.400:2	0/1:37,28:27:65:0.431:2
chr18	334994	rs2305025	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,7:32:7:1.00:2	./.	0/1:1,3:31:4:0.750:2	./.	./.	./.
chr18	335099	rs8098850	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:14,14:32:28:0.500:2	./.	./.	./.	./.	0/1:15,5:31:20:0.250:2	./.	./.
chr18	346821	rs3826628	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,51:31:87:0.586:2	0/1:26,27:30:53:0.509:2	./.	./.	0/1:30,33:31:63:0.524:2	./.	./.	./.
chr18	480762	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,6:31:121:0.050:2
chr18	580623	rs61734344	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,24:28:59:0.407:2	./.	./.	./.	./.
chr18	581123	rs568365	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:34:9:0.333:2	./.	0/1:41,50:32:91:0.549:2	./.	0/1:53,41:32:95:0.436:2	./.	0/1:55,52:33:107:0.486:2	./.	0/1:68,64:32:132:0.485:2
chr18	581201	rs35423929	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:55,23:31:78:0.295:2	0/1:30,22:32:52:0.423:2	./.	./.	0/1:51,15:30:66:0.227:2	./.	0/1:75,37:31:112:0.330:2	./.	0/1:64,27:32:91:0.297:2	0/1:67,27:32:94:0.287:2	0/1:65,42:32:107:0.393:2
chr18	581203	rs62088229	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,14:31:66:0.222:2	./.	./.	./.	./.	./.	./.
chr18	581204	rs3216112	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:55,22:29:78:0.286:2	0/1:32,21:31:54:0.396:2	./.	./.	0/1:52,14:31:67:0.212:2	./.	0/1:80,36:31:117:0.310:2	./.	0/1:66,25:31:93:0.275:2	0/1:68,24:30:95:0.261:2	0/1:67,40:30:109:0.374:2
chr18	581246	rs72863071	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,16:33:67:0.239:2	./.	./.	./.	./.	./.	./.
chr18	581446	rs571200	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,37:31:74:0.500:2	./.	0/1:33,26:31:59:0.441:2	./.	./.	./.	./.
chr18	581954	rs1056234	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:99,65:32:164:0.396:2	0/1:60,57:32:117:0.487:2	./.	./.	0/1:78,40:31:118:0.339:2	./.	./.	./.	0/1:68,65:32:133:0.489:2	0/1:88,71:31:159:0.447:2	0/1:89,77:32:166:0.464:2
chr18	627246	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:33:136:0.029:2	./.	./.	./.	./.
chr18	658064	rs2853533	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,19:32:30:0.633:2	./.	./.	0/1:17,14:33:31:0.452:2	0/1:7,4:33:11:0.364:2	./.
chr18	658332	rs72634355	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,35:31:94:0.372:2	./.	0/1:36,38:32:74:0.514:2	./.
chr18	674320	rs3744962	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,20:31:36:0.556:2	./.	./.
chr18	691266	rs2612086	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,52:30:105:0.495:2	./.	0/1:66,41:30:107:0.383:2	./.	./.	0/1:0,109:31:109:1.00:2	./.	./.
chr18	694339	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr18	706558	rs58085394	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,25:33:45:0.556:2	0/1:18,7:32:25:0.280:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	712568	rs3786349	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.
chr18	724612	rs537141	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,80:32:80:1.00:2	0/1:1,79:33:80:0.988:2	0/1:0,62:32:62:1.00:2	0/1:0,77:32:77:1.00:2
chr18	742943	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:32:146:0.027:2	./.	./.	./.	./.
chr18	751739	rs117449313	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,17:33:40:0.425:2	./.	./.	./.	./.	./.	./.	./.
chr18	907675	rs8192597	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,2:31:3:0.667:2	./.	./.	0/1:2,9:29:11:0.818:2	./.	0/1:7,3:30:10:0.300:2	./.	./.	0/1:2,7:32:9:0.778:2	0/1:0,7:30:7:1.00:2	0/1:0,4:32:4:1.00:2
chr18	907710	rs2856966	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	./.	./.	./.	./.
chr18	909561	rs2231187	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:35:3:0.667:2	./.	0/1:22,24:32:46:0.522:2	./.	./.	./.	./.	./.	./.
chr18	2539016	rs8084295	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,15:32:15:1.00:2	0/1:0,9:33:9:1.00:2	./.	0/1:0,15:32:15:1.00:2	0/1:0,19:33:19:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,22:33:22:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,32:34:32:1.00:2
chr18	2544702	rs7226507	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,36:31:72:0.500:2	./.	./.	./.
chr18	2547480	rs35591317	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,46:33:83:0.554:2	./.	./.	./.	./.	./.	./.	./.
chr18	2547500	rs2677879	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:35,23:31:58:0.397:2	0/1:19,7:26:26:0.269:2	0/1:24,23:31:47:0.489:2	0/1:29,8:32:37:0.216:2	0/1:0,40:32:40:1.00:2	0/1:0,48:32:48:1.00:2	0/1:22,17:31:39:0.436:2	0/1:43,31:32:74:0.419:2
chr18	2554807	rs34143130	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,23:31:54:0.426:2	./.	./.	./.
chr18	2554836	rs16943442	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,42:32:110:0.382:2	./.	./.	./.
chr18	2555002	rs12607882	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,4:30:28:0.143:2	./.	./.	./.
chr18	2555005	rs61730027	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,4:31:28:0.143:2	./.	./.	./.
chr18	2555008	rs12606220	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,4:32:26:0.154:2	./.	./.	./.
chr18	2595443	rs12456560	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,94:30:95:0.989:2	./.	./.	0/1:3,56:31:59:0.949:2	0/1:51,57:31:108:0.528:2	./.	./.	./.
chr18	2616457	rs9051	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:33:7:0.857:2	./.	./.	./.	./.	./.	0/1:59,37:33:96:0.385:2	./.	./.
chr18	2656248	rs2430853	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:7,4:32:11:0.364:2	./.	0/1:5,4:32:9:0.444:2	0/1:18,18:31:36:0.500:2	0/1:2,21:30:23:0.913:2	0/1:16,12:33:28:0.429:2	0/1:14,13:32:27:0.481:2	0/1:8,13:32:21:0.619:2	0/1:10,5:28:15:0.333:2	./.	0/1:4,5:31:9:0.556:2
chr18	2705700	rs635132	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,22:28:23:0.957:2	0/1:1,5:27:6:0.833:2	0/1:1,3:30:4:0.750:2	0/1:9,12:27:21:0.571:2	0/1:17,8:28:25:0.320:2	0/1:14,6:25:20:0.300:2	0/1:13,5:24:18:0.278:2	0/1:13,19:29:32:0.594:2	0/1:0,22:27:22:1.00:2	0/1:0,20:27:20:1.00:2	0/1:10,15:25:25:0.600:2
chr18	2706438	rs188187431	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,12:31:55:0.218:2	./.	./.	./.	./.	./.	./.	./.
chr18	2707619	rs2276092	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,41:32:115:0.357:2	0/1:60,36:32:96:0.375:2	0/1:6,5:31:11:0.455:2	0/1:1,179:31:180:0.994:2	0/1:72,35:31:107:0.327:2	0/1:1,164:31:165:0.994:2	0/1:64,54:31:118:0.458:2	0/1:0,192:31:192:1.00:2	0/1:0,166:32:166:1.00:2	0/1:0,103:32:103:1.00:2	0/1:0,177:31:177:1.00:2
chr18	2724930	rs633422	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:16,11:32:27:0.407:2	./.	./.	0/1:15,30:31:45:0.667:2	./.	0/1:10,10:31:20:0.500:2	0/1:8,11:33:19:0.579:2	0/1:11,13:31:24:0.542:2	0/1:0,26:32:26:1.00:2	0/1:0,23:32:23:1.00:2	0/1:10,22:32:32:0.688:2
chr18	2740714	rs12327477	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:27,23:30:50:0.460:2	0/1:7,8:28:15:0.533:2	./.	./.	0/1:23,24:27:47:0.511:2	./.	./.	./.	./.	./.	./.
chr18	2750472	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:31:46:0.087:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	2750477	rs2304859	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:32,28:30:60:0.467:2	0/1:20,24:29:44:0.545:2	./.	./.	0/1:17,18:30:35:0.514:2	./.	./.	./.	./.	./.	./.
chr18	2763697	rs483547	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,54:31:93:0.581:2	0/1:27,25:32:52:0.481:2	0/1:4,7:31:11:0.636:2	0/1:0,106:31:107:1.00:2	./.	0/1:64,46:31:110:0.418:2	0/1:35,39:31:74:0.527:2	0/1:45,49:31:94:0.521:2	0/1:0,140:32:140:1.00:2	0/1:0,85:31:85:1.00:2	0/1:72,62:31:134:0.463:2
chr18	2847817	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:33:38:0.105:2	./.	./.	./.	./.
chr18	2885118	rs592120	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,16:29:27:0.593:2	0/1:5,7:29:12:0.583:2	./.	./.	./.	0/1:13,13:29:26:0.500:2	./.	0/1:10,12:31:22:0.545:2
chr18	2891096	rs146858570	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,23:31:48:0.479:2	./.	./.	./.	./.	./.
chr18	2891478	rs3810067	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,42:29:79:0.532:2	./.	./.	./.	./.	./.
chr18	2891847	rs3826638	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,19:31:35:0.543:2	0/1:30,17:31:47:0.362:2	./.	0/1:20,30:31:50:0.600:2	./.	./.	./.	./.
chr18	2892474	rs16943989	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:33:7:0.571:2	./.	./.
chr18	2937867	rs80338805	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,35:31:87:0.402:2
chr18	2937943	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:33:67:0.060:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	3067278	rs2230164	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,54:28:54:1.00:2	0/1:0,25:29:25:1.00:2	./.	0/1:32,26:28:58:0.448:2	./.	./.	0/1:41,34:28:75:0.453:2	0/1:40,36:28:76:0.474:2	0/1:36,17:29:53:0.321:2	0/1:22,24:27:48:0.522:2	./.
chr18	3075712	rs2298539	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:32:35:1.00:2	0/1:1,27:32:28:0.964:2	0/1:1,8:32:9:0.889:2	0/1:28,21:31:49:0.429:2	./.	./.	0/1:41,25:32:66:0.379:2	0/1:18,35:31:53:0.660:2	0/1:42,12:32:54:0.222:2	0/1:37,13:32:50:0.260:2	./.
chr18	3075746	rs1143657	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.	./.	./.	0/1:25,16:33:41:0.390:2	./.	0/1:29,7:33:36:0.194:2	0/1:25,9:32:34:0.265:2	./.
chr18	3075778	rs2298537	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:32:9:0.333:2	./.	0/1:13,5:34:18:0.278:2	0/1:8,3:32:11:0.273:2	./.
chr18	3086065	rs3765623	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,18:33:40:0.450:2	0/1:6,13:32:19:0.684:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	3089522	rs948298	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,6:33:11:0.545:2	0/1:5,8:33:13:0.615:2	0/1:1,2:33:3:0.667:2	0/1:5,4:31:9:0.444:2	0/1:0,5:33:5:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,5:32:5:1.00:2	./.	0/1:0,13:34:13:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,16:34:16:1.00:2
chr18	3126811	rs1071600	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,91:32:194:0.469:2	./.	./.	0/1:112,75:32:187:0.401:2	./.	0/1:98,94:34:192:0.490:2	./.	./.
chr18	3164385	rs11659820	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:23,40:31:63:0.635:2	0/1:17,9:32:26:0.346:2	./.	./.	./.	./.	0/1:21,15:31:36:0.417:2	./.	0/1:38,29:33:67:0.433:2	./.	./.
chr18	3164408	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr18	3168816	rs2230167	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:37,43:32:80:0.538:2	0/1:34,15:32:49:0.306:2	./.	./.	./.	./.	./.	0/1:70,50:32:120:0.417:2	0/1:86,70:33:156:0.449:2	0/1:53,30:32:83:0.361:2	0/1:0,101:32:101:1.00:2
chr18	3173964	rs2230163	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:27,21:32:48:0.438:2	0/1:18,16:32:34:0.471:2	./.	./.	./.	./.	0/1:26,18:32:44:0.409:2	0/1:2,60:31:62:0.968:2	0/1:37,36:33:73:0.493:2	0/1:32,11:32:43:0.256:2	0/1:0,59:32:59:1.00:2
chr18	3176040	rs8099021	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,65:30:65:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,9:30:9:1.00:2	./.	0/1:42,45:30:87:0.517:2	0/1:1,93:30:94:0.989:2	0/1:50,51:30:101:0.505:2	0/1:0,76:30:76:1.00:2	0/1:0,98:31:98:1.00:2	0/1:36,21:29:57:0.368:2	0/1:1,77:29:78:0.987:2
chr18	3176063	rs2230162	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:36,42:32:78:0.538:2	0/1:22,25:32:47:0.532:2	./.	./.	./.	./.	0/1:56,48:32:104:0.462:2	0/1:0,78:32:78:1.00:2	0/1:79,33:33:112:0.295:2	0/1:40,30:32:70:0.429:2	0/1:2,84:32:86:0.977:2
chr18	3187497	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:34:117:0.034:2	./.	./.
chr18	3188857	rs2230166	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,79:30:181:0.436:2	./.	./.
chr18	3188873	rs2230165	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,89:32:188:0.473:2	./.	./.
chr18	3188908	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:32:186:0.022:2	./.	./.	./.	./.
chr18	3188976	rs1962519	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:59,66:31:125:0.528:2	0/1:34,41:31:76:0.547:2	0/1:0,10:32:10:1.00:2	./.	0/1:50,41:31:91:0.451:2	0/1:0,96:31:96:1.00:2	./.	0/1:64,55:31:120:0.462:2	./.	0/1:52,60:32:112:0.536:2	0/1:0,119:31:119:1.00:2
chr18	3215030	rs9964300	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,8:27:14:0.571:2	./.	./.	./.	./.	./.
chr18	3215131	rs76382984	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,28:31:74:0.378:2	./.	./.	./.	./.	./.	./.
chr18	3215156	rs1662316	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,30:32:70:0.429:2
chr18	3215158	rs1791085	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,31:31:72:0.431:2
chr18	3253326	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,6:33:174:0.035:2	./.
chr18	3253383	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:33:122:0.033:2	0/1:100,4:33:105:0.038:2	./.	./.
chr18	3253407	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,4:30:98:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr18	3255751	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:31:107:0.037:2	./.	./.	./.	./.	./.
chr18	3255764	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:32:118:0.034:2	./.	./.	./.	./.	./.
chr18	3255766	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.	./.	./.
chr18	3255844	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:33:196:0.020:2	./.
chr18	3272971	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:34:196:0.020:2
chr18	3273023	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:31:159:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	3277411	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:32:185:0.022:2	./.	./.	./.	./.	./.
chr18	3447725	rs238137	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,75:29:149:0.503:2	./.	./.	./.
chr18	3450455	rs238132	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,14:33:33:0.424:2	0/1:13,11:32:24:0.458:2	./.	0/1:29,32:32:61:0.525:2	0/1:26,19:32:45:0.422:2	0/1:31,35:32:66:0.530:2	0/1:25,33:32:58:0.569:2	./.	./.	./.	./.
chr18	3452007	rs145179055	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:32:10:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.
chr18	3457539	rs2229337	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,26:28:59:0.441:2	0/1:20,13:27:33:0.394:2	0/1:27,25:28:52:0.481:2	0/1:17,9:27:26:0.346:2	0/1:25,24:28:49:0.490:2	./.	./.	./.
chr18	3457606	rs4468717	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:43,38:32:81:0.469:2	0/1:20,14:33:34:0.412:2	./.	0/1:51,54:33:105:0.514:2	./.	./.	./.	./.	./.	./.	./.
chr18	3457607	rs2229333	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,48:32:104:0.462:2	0/1:62,59:32:121:0.488:2	0/1:52,71:32:123:0.577:2	0/1:47,52:33:99:0.525:2	0/1:58,62:32:120:0.517:2	./.	./.	./.
chr18	3457608	rs2229334	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:34:126:0.032:2	./.	./.	./.
chr18	3457645	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:33:150:0.027:2	./.	./.	./.
chr18	3534224	rs35822832	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,58:32:141:0.411:2	./.	./.	./.	./.	./.	./.
chr18	3581966	rs56017170	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:103,76:32:179:0.425:2	0/1:44,49:32:93:0.527:2	./.	./.	0/1:90,95:32:185:0.514:2	0/1:85,90:32:175:0.514:2	0/1:91,88:32:179:0.492:2	0/1:96,91:32:187:0.487:2	0/1:93,65:34:158:0.411:2	./.	0/1:102,62:32:165:0.378:2
chr18	3656058	rs2270195	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,13:33:24:0.542:2	./.	./.	./.	./.
chr18	3729175	rs3745051	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,30:31:53:0.566:2	./.	./.
chr18	3879694	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,4:31:23:0.174:2	./.	./.	./.	./.	./.	./.	./.
chr18	5145609	rs1395063	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,74:31:172:0.430:2	./.	./.	0/1:99,54:32:153:0.353:2	./.	./.	0/1:94,56:31:150:0.373:2	./.
chr18	5197057	rs115401521	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,26:30:54:0.481:2	0/1:31,10:33:41:0.244:2	./.	0/1:41,18:31:59:0.305:2	./.	./.	0/1:44,12:31:56:0.214:2	./.
chr18	5292030	rs620652	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:33:37:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,25:33:25:1.00:2	0/1:0,21:32:21:1.00:2	0/1:33,19:33:52:0.365:2	0/1:0,28:33:28:1.00:2	0/1:0,48:33:48:1.00:2
chr18	5397205	rs142853345	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:32:11:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.
chr18	5397323	rs8096452	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,27:31:70:0.386:2	./.	./.	./.	./.	./.	./.	./.
chr18	5410574	rs3817466	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:29:55:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,13:29:13:1.00:2	0/1:43,38:29:81:0.469:2	0/1:58,56:30:114:0.491:2	0/1:0,81:30:81:1.00:2	0/1:0,85:29:85:1.00:2	0/1:0,69:29:69:1.00:2	0/1:0,62:30:62:1.00:2	./.	0/1:0,61:28:61:1.00:2
chr18	5416221	rs9966357	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,15:29:36:0.417:2	0/1:33,22:31:55:0.400:2
chr18	5478295	rs117900256	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,79:32:193:0.409:2
chr18	5890467	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,4:29:30:0.133:2
chr18	5891637	rs28656885	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,34:32:55:0.618:2	0/1:38,26:30:64:0.406:2	0/1:36,27:29:63:0.429:2	0/1:26,22:30:48:0.458:2	0/1:22,39:31:61:0.639:2	0/1:25,18:33:43:0.419:2	./.	./.
chr18	5891976	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:32:140:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	5956238	rs3737353	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,38:31:93:0.409:2	0/1:60,43:31:103:0.417:2	0/1:56,52:30:108:0.481:2	0/1:59,46:31:105:0.438:2	0/1:0,122:31:122:1.00:2	0/1:72,52:31:124:0.419:2	0/1:46,40:32:86:0.465:2	0/1:72,65:31:137:0.474:2
chr18	5956381	rs61733889	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,46:31:79:0.582:2	./.	./.	./.	./.	./.	./.	./.
chr18	5960165	rs505559	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,11:31:13:0.846:2	0/1:0,199:32:199:1.00:2	0/1:78,46:32:124:0.371:2	0/1:0,157:31:157:1.00:2	0/1:107,74:32:181:0.409:2	0/1:2,189:32:191:0.990:2	0/1:96,104:33:200:0.520:2	0/1:69,78:33:147:0.531:2	0/1:100,97:33:197:0.492:2
chr18	6046717	rs7234770	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,26:32:26:1.00:2	0/1:2,13:32:15:0.867:2	./.	0/1:0,40:31:40:1.00:2	0/1:11,8:31:19:0.421:2	0/1:18,19:32:37:0.514:2	0/1:11,13:32:24:0.542:2	0/1:14,17:32:31:0.548:2	./.	0/1:23,11:32:34:0.324:2	0/1:21,18:32:39:0.462:2
chr18	6239751	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,5:33:77:0.065:2	./.	./.
chr18	6889973	rs4239328	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,32:29:63:0.508:2	0/1:19,15:30:34:0.441:2	0/1:3,3:30:6:0.500:2	0/1:34,28:31:62:0.452:2	0/1:28,9:27:37:0.243:2	0/1:0,48:28:48:1.00:2	0/1:39,22:30:61:0.361:2	0/1:0,75:30:75:1.00:2	0/1:1,56:30:57:0.982:2	0/1:30,15:31:45:0.333:2	0/1:0,90:29:90:1.00:2
chr18	6890434	rs1116757	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:108,65:30:174:0.376:2	0/1:67,38:29:105:0.362:2	0/1:12,17:30:29:0.586:2	0/1:110,84:29:194:0.433:2	0/1:68,37:28:105:0.352:2	0/1:0,127:29:127:1.00:2	0/1:58,59:29:117:0.504:2	0/1:1,155:29:156:0.994:2	0/1:0,176:30:176:1.00:2	0/1:83,50:29:133:0.376:2	0/1:0,184:29:184:1.00:2
chr18	6890538	rs74414891	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,19:32:41:0.463:2	0/1:25,26:33:51:0.510:2	./.	./.	./.
chr18	6912143	rs1056408	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,13:33:23:0.565:2	0/1:7,10:32:17:0.588:2	./.	0/1:8,9:33:17:0.529:2	0/1:0,12:32:12:1.00:2	0/1:0,16:32:17:1.00:2	0/1:0,11:33:11:1.00:2	0/1:2,28:32:30:0.933:2	0/1:0,24:33:24:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,32:33:32:1.00:2
chr18	6943264	rs2016639	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:103,89:32:192:0.464:2	0/1:61,41:32:102:0.402:2	./.	0/1:89,100:32:189:0.529:2	0/1:119,73:32:192:0.380:2	./.	./.	./.	0/1:103,84:33:187:0.449:2	0/1:115,79:32:194:0.407:2	0/1:108,80:32:188:0.426:2
chr18	6958609	rs543355	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,48:29:101:0.475:2	./.	./.	./.	./.	./.	0/1:50,53:29:103:0.515:2	./.
chr18	6959468	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:34:106:0.038:2	./.
chr18	6971936	rs615809	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,17:32:28:0.607:2	./.	./.	./.	./.	./.
chr18	6975995	rs117225191	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:34:94:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	6977844	rs671871	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,13:32:32:0.406:2	0/1:10,17:33:27:0.630:2	./.	./.	./.	./.	0/1:10,22:32:32:0.688:2	./.
chr18	6978345	rs9955616	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,39:30:70:0.565:2	./.	./.	./.	./.	./.	0/1:23,19:30:42:0.452:2	./.
chr18	6980523	rs607230	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,38:34:88:0.432:2	0/1:22,27:33:49:0.551:2	0/1:0,9:33:9:1.00:2	0/1:47,52:33:99:0.525:2	0/1:0,45:32:45:1.00:2	0/1:30,42:32:72:0.583:2	./.	0/1:44,28:33:72:0.389:2	0/1:0,92:34:92:1.00:2	0/1:41,34:33:75:0.453:2	0/1:45,48:34:93:0.516:2
chr18	6983194	rs11661974	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,37:33:71:0.521:2	0/1:23,20:32:43:0.465:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	6985270	rs11664063	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,23:31:23:1.00:2	./.	0/1:90,97:31:187:0.519:2	0/1:80,85:30:165:0.515:2	./.	0/1:98,98:31:196:0.500:2	0/1:1,156:32:158:0.994:2	./.	0/1:71,83:32:154:0.539:2
chr18	6985631	rs617206	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,70:31:147:0.476:2	0/1:65,55:30:120:0.458:2	./.	./.	./.	./.	0/1:62,59:31:121:0.488:2	./.
chr18	6986227	rs12607841	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:51,40:30:91:0.440:2	0/1:21,26:30:47:0.553:2	./.	./.	./.	./.	0/1:64,59:31:123:0.480:2	./.	./.	./.	0/1:59,59:30:121:0.500:2
chr18	6986259	rs62081531	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:36,40:32:76:0.526:2	0/1:30,16:32:46:0.348:2	0/1:0,18:32:18:1.00:2	./.	0/1:58,44:31:102:0.431:2	0/1:35,24:31:59:0.407:2	./.	0/1:86,54:31:140:0.386:2	0/1:0,85:32:85:1.00:2	./.	0/1:61,52:32:113:0.460:2
chr18	6993673	rs62081533	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:34,40:30:74:0.541:2	0/1:43,41:30:84:0.488:2	0/1:0,15:29:15:1.00:2	./.	0/1:77,44:30:121:0.364:2	./.	./.	0/1:87,60:29:147:0.408:2	0/1:73,61:31:134:0.455:2	./.	0/1:70,57:29:127:0.449:2
chr18	6997818	rs12961939	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,37:33:55:0.673:2	0/1:24,19:32:43:0.442:2	0/1:30,15:33:45:0.333:2	0/1:24,30:33:54:0.556:2	./.	./.	0/1:23,36:31:59:0.610:2
chr18	6999589	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:31:74:0.054:2	./.	./.	./.	./.	./.
chr18	6999628	rs625106	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:19,19:28:38:0.500:2	0/1:17,16:28:33:0.485:2	0/1:0,3:29:3:1.00:2	./.	0/1:45,39:29:84:0.464:2	./.	0/1:0,66:28:66:1.00:2	0/1:2,48:29:51:0.960:2	./.	0/1:27,20:30:47:0.426:2	0/1:17,21:30:38:0.553:2
chr18	6999963	rs12970643	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,35:32:65:0.538:2	./.	./.	./.	./.
chr18	7008583	rs73938538	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,24:31:50:0.480:2	0/1:10,9:32:19:0.474:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	7008591	rs662471	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:31:5:1.00:2	0/1:35,9:33:44:0.205:2	0/1:0,35:32:35:1.00:2	0/1:21,18:32:39:0.462:2	./.	0/1:39,25:32:64:0.391:2	0/1:20,20:34:40:0.500:2	0/1:19,22:32:41:0.537:2	0/1:28,18:33:46:0.391:2
chr18	7009293	rs149753863	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,23:32:50:0.460:2	./.	./.	./.	./.
chr18	7011338	rs12969598	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,26:31:39:0.667:2	./.	./.	./.	./.
chr18	7011413	rs619106	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,24:33:56:0.429:2	0/1:15,9:33:24:0.375:2	0/1:2,3:34:5:0.600:2	0/1:23,26:32:49:0.531:2	0/1:0,51:31:51:1.00:2	./.	0/1:20,21:32:41:0.512:2	0/1:33,41:32:74:0.554:2	./.	0/1:33,20:33:53:0.377:2	0/1:28,29:31:57:0.509:2
chr18	7012123	rs9946794	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,17:32:39:0.436:2	0/1:5,14:32:19:0.737:2	./.	0/1:13,8:33:21:0.381:2	0/1:0,12:32:12:1.00:2	0/1:17,8:32:25:0.320:2	0/1:23,6:32:29:0.207:2	0/1:31,5:33:36:0.139:2	0/1:24,8:35:32:0.250:2	0/1:5,6:32:11:0.545:2	0/1:16,12:32:28:0.429:2
chr18	7013849	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,36:33:60:0.600:2	0/1:14,6:32:20:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	7017322	rs539713	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,38:28:71:0.535:2	0/1:23,25:30:48:0.521:2	0/1:0,11:29:11:1.00:2	0/1:54,32:29:86:0.372:2	0/1:87,55:30:142:0.387:2	0/1:73,66:30:139:0.475:2	0/1:2,99:30:101:0.980:2	0/1:0,119:30:119:1.00:2	0/1:0,100:31:100:1.00:2	./.	0/1:40,30:28:70:0.429:2
chr18	7023371	rs684634	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:31:3:1.00:2	0/1:31,24:31:56:0.436:2	0/1:26,18:28:44:0.409:2	0/1:22,26:31:48:0.542:2	0/1:36,27:30:63:0.429:2	0/1:41,27:30:68:0.397:2	0/1:35,16:30:51:0.314:2	./.	0/1:25,10:33:35:0.286:2
chr18	7033037	rs621993	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:33:6:1.00:2	0/1:24,13:32:37:0.351:2	0/1:24,27:32:51:0.529:2	0/1:24,20:31:44:0.455:2	0/1:18,24:32:42:0.571:2	0/1:30,24:32:54:0.444:2	0/1:21,26:33:47:0.553:2	./.	0/1:9,10:33:19:0.526:2
chr18	7034508	rs566655	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,36:31:105:0.343:2	0/1:53,29:31:82:0.354:2	0/1:73,50:32:123:0.407:2	./.	./.	0/1:70,61:33:131:0.466:2	./.	0/1:70,69:32:139:0.496:2
chr18	7044806	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:32:72:0.056:2	./.	./.	./.	./.	./.
chr18	7049083	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:32:100:0.040:2	./.	./.	./.	./.
chr18	7231881	rs144753731	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,37:32:72:0.514:2	./.
chr18	7567803	rs67536179	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:28:3:1.00:2	./.	./.
chr18	7955126	rs145680685	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,30:33:61:0.492:2	./.	./.	./.	./.
chr18	8069868	rs2230601	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,35:32:59:0.593:2	0/1:12,18:31:30:0.600:2	0/1:4,5:32:9:0.556:2	0/1:4,47:31:51:0.922:2	./.	0/1:46,36:31:82:0.439:2	0/1:41,46:30:87:0.529:2	0/1:44,38:30:82:0.463:2	./.	./.	0/1:43,45:31:88:0.511:2
chr18	8069896	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:33:81:0.049:2	./.	./.	./.
chr18	8114774	rs147362909	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,43:33:106:0.406:2	./.	./.
chr18	8387195	rs593978	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,67:32:68:0.985:2	0/1:0,19:31:19:1.00:2	0/1:0,11:28:11:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,66:31:66:1.00:2	0/1:47,57:30:104:0.548:2	0/1:1,108:31:109:0.991:2	0/1:55,62:31:118:0.530:2	0/1:66,26:32:92:0.283:2	0/1:2,69:31:71:0.972:2	./.
chr18	8387219	rs593950	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:29:42:1.00:2	0/1:0,12:27:12:1.00:2	0/1:0,7:28:7:1.00:2	0/1:0,46:28:46:1.00:2	0/1:0,43:27:43:1.00:2	0/1:34,32:27:66:0.485:2	0/1:0,72:27:72:1.00:2	0/1:48,51:29:99:0.515:2	0/1:42,20:28:62:0.323:2	0/1:2,44:27:46:0.957:2	./.
chr18	8720368	rs73939505	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,44:32:92:0.478:2	0/1:20,23:32:43:0.535:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	8783835	rs35739383	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,18:30:38:0.474:2	0/1:9,6:30:15:0.400:2	./.	0/1:26,16:30:42:0.381:2	0/1:0,21:27:21:1.00:2	0/1:12,32:29:44:0.727:2	0/1:14,7:27:21:0.333:2	./.	0/1:21,12:30:33:0.364:2	./.	0/1:0,30:29:30:1.00:2
chr18	8784370	rs918272	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:31:27:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,28:30:28:1.00:2	0/1:1,29:29:30:0.967:2	0/1:0,30:30:30:1.00:2	0/1:1,23:30:24:0.958:2	0/1:0,27:31:27:1.00:2	0/1:1,24:30:25:0.960:2	0/1:0,25:30:25:1.00:2
chr18	8784612	rs1965665	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,8:29:19:0.421:2	0/1:4,8:29:12:0.667:2	./.	./.	./.	0/1:11,9:30:20:0.450:2	0/1:4,3:31:7:0.429:2	0/1:4,5:29:9:0.556:2	./.	0/1:0,5:29:5:1.00:2	./.
chr18	8784723	rs3744979	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,11:33:28:0.393:2	0/1:15,5:32:20:0.250:2	./.	./.	./.	./.	./.	./.	0/1:20,11:33:31:0.355:2	./.	./.
chr18	8798185	rs12386117	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:91,56:32:147:0.381:2	0/1:49,33:32:82:0.402:2	./.	./.	0/1:112,75:31:187:0.401:2	0/1:89,100:31:189:0.529:2	./.	0/1:108,77:31:185:0.416:2	./.	./.	./.
chr18	8819246	rs55676538	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,13:32:17:0.765:2	./.	0/1:9,12:32:21:0.571:2	./.	./.	./.
chr18	8824791	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:187,4:32:191:0.021:2	./.	./.	./.	./.	./.	./.
chr18	8825192	rs581894	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,14:31:25:0.560:2	0/1:7,5:31:12:0.417:2	./.	0/1:1,45:32:46:0.978:2	0/1:1,15:31:16:0.938:2	0/1:0,34:32:34:1.00:2	./.	0/1:24,34:32:58:0.586:2	0/1:0,22:33:22:1.00:2	0/1:22,16:32:38:0.421:2	./.
chr18	8825399	rs16954339	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:33:155:0.026:2	./.	./.	./.
chr18	8826083	rs3744977	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:32:50:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,113:33:113:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,53:32:53:1.00:2
chr18	8828952	rs2242273	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,50:33:81:0.617:2	0/1:13,34:32:47:0.723:2	./.	./.	./.	0/1:46,45:32:91:0.495:2	./.	./.	0/1:0,98:33:98:1.00:2	0/1:54,35:32:89:0.393:2	./.
chr18	8831615	rs11665124	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,29:31:68:0.426:2	0/1:25,23:31:48:0.479:2	./.	./.	./.	./.	./.	./.	0/1:56,34:30:90:0.378:2	0/1:52,53:30:105:0.505:2	./.
chr18	9117867	rs906807	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:32:54:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,6:34:6:1.00:2	0/1:0,49:33:49:1.00:2	0/1:16,21:31:38:0.568:2	0/1:0,43:32:43:1.00:2	0/1:0,15:34:15:1.00:2	0/1:1,45:33:46:0.978:2	0/1:24,26:34:50:0.520:2	0/1:0,47:33:47:1.00:2	0/1:48,49:33:97:0.505:2
chr18	9119489	rs41274300	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,49:31:72:0.681:2
chr18	9122540	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,4:32:54:0.074:2	./.	./.	./.	0/1:73,5:33:79:0.064:2	0/1:63,4:30:67:0.060:2	./.
chr18	9122591	rs76552443	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:109,6:26:115:0.052:2	0/1:77,4:29:81:0.049:2	0/1:20,3:29:23:0.130:2	0/1:126,12:30:138:0.087:2	0/1:114,13:29:127:0.102:2	./.	./.	0/1:134,16:30:150:0.107:2	./.	0/1:130,15:30:145:0.103:2	./.
chr18	9122611	rs72935225	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:119,4:31:123:0.033:2	0/1:83,4:32:87:0.046:2	./.	0/1:134,10:32:145:0.069:2	0/1:127,13:29:140:0.093:2	./.	./.	0/1:163,12:31:175:0.069:2	./.	0/1:133,14:32:147:0.095:2	./.
chr18	9122638	rs148158107	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:125,7:33:134:0.053:2	0/1:123,16:32:139:0.115:2	0/1:121,4:31:125:0.032:2	0/1:155,6:30:161:0.037:2	0/1:162,12:31:174:0.069:2	0/1:118,4:34:122:0.033:2	0/1:123,17:33:140:0.121:2	0/1:161,7:32:168:0.042:2
chr18	9124916	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:34:51:0.078:2	./.	./.	./.	./.
chr18	9124949	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,4:31:77:0.052:2	./.	./.	./.	./.	./.	./.
chr18	9126880	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:35:104:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	9254411	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,3:33:52:0.058:2	./.	./.	./.	./.	./.	./.
chr18	9255982	rs4798791	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:34:30:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,29:33:29:1.00:2	0/1:18,13:33:31:0.419:2	0/1:0,23:32:23:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,25:32:25:1.00:2	0/1:14,13:33:27:0.481:2	0/1:0,20:32:20:1.00:2	./.
chr18	9258135	rs113078133	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,14:31:25:0.560:2	./.	0/1:6,15:32:21:0.714:2	./.	./.	./.
chr18	9517045	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:32:82:0.049:2	./.
chr18	9517058	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:73,4:32:77:0.052:2	./.	./.	./.	./.	./.	./.	0/1:78,6:33:84:0.071:2	./.	./.	./.
chr18	9522447	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,4:31:71:0.056:2	./.	./.	./.	./.	./.	./.
chr18	9530872	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:32:167:0.024:2	./.
chr18	9562042	rs2306134	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,74:31:139:0.532:2	./.	./.	./.	./.	./.	./.
chr18	9570320	rs329003	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,26:27:55:0.473:2	./.	./.	./.	./.	0/1:37,39:30:76:0.513:2	./.	0/1:40,50:29:90:0.556:2
chr18	9570370	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:33:91:0.044:2	./.	./.
chr18	9775362	rs149779563	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,99:31:196:0.505:2	./.	./.	./.	./.	./.	./.
chr18	9886890	rs601874	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,31:28:32:0.969:2	0/1:1,19:29:20:0.950:2	./.	./.	./.	./.	./.	./.	0/1:25,10:29:35:0.286:2	./.	0/1:23,19:28:42:0.452:2
chr18	9886894	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,3:33:29:0.103:2	./.
chr18	9886988	rs34812912	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,23:29:28:0.821:2	0/1:22,15:30:38:0.405:2	./.	./.	./.	./.	./.
chr18	9887149	rs11662946	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,15:31:16:0.938:2	0/1:17,20:31:37:0.541:2	./.	./.	./.	./.	./.
chr18	9887167	rs72947591	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,19:33:44:0.432:2	0/1:7,6:29:13:0.462:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,22:31:39:0.564:2
chr18	9887205	rs62078800	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,18:30:46:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,21:30:41:0.512:2
chr18	9887394	rs2240910	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,45:29:46:0.978:2	./.	0/1:34,15:29:49:0.306:2	0/1:20,18:31:38:0.474:2	0/1:21,14:30:35:0.400:2	./.	0/1:21,13:30:34:0.382:2	./.
chr18	9887416	rs2240909	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,4:28:17:0.235:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:30:36:0.111:2
chr18	9887419	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:32:36:0.111:2
chr18	9887429	rs2240908	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,14:29:18:0.778:2	0/1:3,7:31:10:0.700:2	./.	./.	./.	./.	./.	./.	0/1:18,8:30:26:0.308:2	./.	0/1:23,15:31:39:0.395:2
chr18	9887433	rs2240907	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,14:32:18:0.778:2	0/1:2,8:31:10:0.800:2	./.	./.	./.	./.	./.	./.	0/1:17,12:33:29:0.414:2	./.	0/1:25,16:33:41:0.390:2
chr18	9887437	rs201095206	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,3:29:17:0.176:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	9887461	rs202224858	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:26:44:0.091:2
chr18	9887493	rs140680585	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr18	9887497	rs11081510	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:31:4:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,27:30:27:1.00:2	0/1:2,44:30:46:0.957:2	0/1:1,33:31:34:0.971:2	0/1:1,20:31:21:0.952:2	0/1:18,17:32:35:0.486:2	0/1:0,16:32:17:1.00:2	0/1:29,12:30:41:0.293:2
chr18	9887546	rs2240906	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,37:31:38:0.974:2	./.	0/1:28,11:30:39:0.282:2	0/1:23,19:29:42:0.452:2	0/1:16,12:31:28:0.429:2	./.	0/1:20,13:32:33:0.394:2	./.
chr18	9887586	rs141824629	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,5:28:6:0.833:2	./.	./.	./.	./.	./.	./.	./.	./.
chr18	9887857	rs17732496	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:30:10:1.00:2	./.	./.	./.	0/1:53,49:31:102:0.480:2	0/1:56,40:31:96:0.417:2	0/1:46,36:31:82:0.439:2	0/1:37,34:31:71:0.479:2	0/1:40,47:30:87:0.540:2
chr18	9887877	rs34362649	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,44:30:83:0.530:2	0/1:23,22:30:45:0.489:2	./.	./.	./.	./.	./.	./.	0/1:53,53:33:106:0.500:2	./.	./.
chr18	9887936	rs17805544	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,80:31:184:0.437:2	0/1:105,80:31:185:0.432:2	./.	./.	./.	./.
chr18	9888027	rs11664080	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,122:31:122:1.00:2	0/1:64,51:31:115:0.443:2	./.	./.	./.	./.	./.
chr18	9888069	rs2240905	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,91:32:95:0.958:2	./.	0/1:33,33:32:66:0.500:2	0/1:45,44:32:89:0.494:2	0/1:59,49:32:108:0.454:2	./.	0/1:36,39:33:75:0.520:2	./.
chr18	9931866	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,4:31:28:0.143:2	./.	./.	./.	./.	./.	./.
chr18	9936185	rs1127666	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:31:119:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	10454960	rs28769876	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:30:18:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,9:28:9:1.00:2
chr18	10454995	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:31:50:0.080:2	./.	./.	./.	./.	./.
chr18	10485712	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,4:31:65:0.062:2	./.	./.	./.	./.	./.	./.	./.
chr18	10487918	rs3185480	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,76:30:76:1.00:2	./.	./.	0/1:53,47:30:100:0.470:2	./.	./.	0/1:21,32:31:53:0.604:2
chr18	10487999	rs60421789	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,31:31:85:0.365:2	./.	./.	./.	./.
chr18	10526114	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:30:45:0.089:2	./.	./.	./.
chr18	10550161	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,4:32:60:0.067:2	./.	./.	./.	./.	./.	./.
chr18	10672851	rs142605748	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,44:32:94:0.468:2
chr18	10677849	rs371283340	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr18	10681711	rs3748428	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,55:32:117:0.470:2
chr18	10691357	rs3748421	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,7:32:32:0.219:2	0/1:27,21:32:48:0.438:2	0/1:0,49:33:49:1.00:2	0/1:39,20:33:59:0.339:2	./.
chr18	10696227	rs2277860	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,35:32:64:0.547:2	0/1:44,36:31:80:0.450:2	0/1:1,76:32:77:0.987:2	0/1:30,24:32:54:0.444:2	./.
chr18	10696534	rs117799245	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:26,26:32:52:0.500:2	0/1:18,16:30:34:0.471:2	./.	0/1:33,30:30:63:0.476:2	./.	./.	./.	./.	./.	./.	./.
chr18	11852182	rs1786581	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,14:32:48:0.292:2	./.	./.	./.
chr18	11853053	rs1647542	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,98:33:100:0.980:2	0/1:1,61:32:62:0.984:2	0/1:0,15:32:15:1.00:2	0/1:0,136:33:136:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,140:33:140:1.00:2	0/1:0,111:33:111:1.00:2	0/1:0,152:33:152:1.00:2
chr18	11853422	rs72868678	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:61,48:32:109:0.440:2	0/1:23,14:33:37:0.378:2	0/1:11,5:32:16:0.313:2	./.	./.	./.	./.	./.	./.	./.	./.
chr18	11853731	rs7238570	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,190:33:191:0.995:2	0/1:0,164:33:164:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,182:33:182:1.00:2	0/1:0,192:33:192:1.00:2	0/1:0,189:33:190:1.00:2	0/1:0,188:34:188:1.00:2	0/1:1,188:33:189:0.995:2	0/1:0,179:34:179:1.00:2	0/1:0,191:33:191:1.00:2	0/1:0,190:33:190:1.00:2
chr18	11854297	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:30:60:0.067:2	./.
chr18	11876613	rs3892113	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,39:32:86:0.453:2	./.	./.	./.	./.	./.	0/1:65,64:33:129:0.496:2
chr18	11885718	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:33:117:0.034:2	./.	./.
chr18	11886563	rs662515	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,14:32:31:0.452:2	./.	0/1:99,93:32:193:0.484:2	0/1:121,77:32:198:0.389:2	./.	0/1:104,93:32:197:0.472:2	0/1:99,98:33:197:0.497:2	./.	0/1:83,94:33:177:0.531:2
chr18	11889385	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,4:33:84:0.048:2	./.	./.	./.	./.	./.	./.
chr18	11999115	rs11545506	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,66:30:148:0.446:2	./.	./.	./.
chr18	12057389	rs9959781	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,84:31:84:1.00:2	0/1:1,49:32:50:0.980:2	./.	0/1:64,50:32:114:0.439:2	0/1:64,42:32:106:0.396:2	0/1:65,59:32:124:0.476:2	0/1:63,59:32:122:0.484:2	0/1:68,40:32:108:0.370:2	0/1:54,43:33:97:0.443:2	0/1:48,47:32:95:0.495:2	0/1:47,47:32:94:0.500:2
chr18	12057403	rs9959774	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,83:31:83:1.00:2	0/1:1,50:29:51:0.980:2	./.	0/1:54,45:29:100:0.455:2	0/1:58,33:29:91:0.363:2	0/1:63,54:31:117:0.462:2	0/1:55,51:30:106:0.481:2	0/1:67,34:30:101:0.337:2	0/1:51,39:31:90:0.433:2	0/1:49,35:31:84:0.417:2	0/1:47,48:30:95:0.505:2
chr18	12057809	rs9960429	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:29:17:1.00:2	0/1:1,5:32:6:0.833:2	./.	0/1:12,9:30:21:0.429:2	0/1:5,6:29:11:0.545:2	0/1:10,5:28:15:0.333:2	0/1:11,8:30:19:0.421:2	0/1:9,7:31:16:0.438:2	0/1:6,6:27:12:0.500:2	0/1:7,6:32:13:0.462:2	0/1:9,6:32:15:0.400:2
chr18	12254816	rs7505615	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,17:31:17:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.	0/1:19,14:32:33:0.424:2	./.	./.	0/1:13,5:29:18:0.278:2	0/1:16,12:32:28:0.429:2	./.
chr18	12254956	rs34939372	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:30:14:0.500:2	./.	./.	./.	0/1:5,5:30:10:0.500:2	./.	./.	./.
chr18	12274104	rs11545881	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:26,10:32:36:0.278:2	0/1:4,7:33:11:0.636:2	./.	./.	0/1:0,36:30:36:1.00:2	./.	0/1:45,17:30:62:0.274:2	0/1:21,26:31:47:0.553:2	./.	0/1:18,9:32:27:0.333:2	0/1:23,15:31:38:0.395:2
chr18	12348285	rs11553521	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,58:33:60:0.967:2	0/1:0,49:32:49:1.00:2	0/1:1,8:33:9:0.889:2	0/1:0,85:32:85:1.00:2	0/1:0,72:32:72:1.00:2	0/1:57,50:32:107:0.467:2	0/1:2,71:33:73:0.973:2	0/1:72,54:32:126:0.429:2	0/1:1,101:34:102:0.990:2	0/1:0,79:33:79:1.00:2	0/1:0,115:33:115:1.00:2
chr18	12351342	rs11080572	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,66:29:68:0.971:2	0/1:0,57:30:57:1.00:2	0/1:7,8:28:15:0.533:2	0/1:0,128:29:128:1.00:2	0/1:0,70:29:70:1.00:2	0/1:56,51:29:107:0.477:2	0/1:0,121:29:122:1.00:2	0/1:61,83:29:144:0.576:2	0/1:0,114:30:115:1.00:2	0/1:0,104:30:104:1.00:2	0/1:1,102:29:104:0.990:2
chr18	12356713	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,4:31:96:0.042:2	./.	./.	./.	./.	./.	./.	./.
chr18	12408037	rs202082400	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.
chr18	12420384	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,4:32:32:0.125:2	./.	./.	./.	./.
chr18	12420423	rs150928266	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,3:31:8:0.375:2	./.	./.	./.	./.	./.
chr18	12658600	rs1062235	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,15:33:40:0.375:2	0/1:11,11:31:22:0.500:2	./.	0/1:33,29:30:62:0.468:2	0/1:26,30:31:56:0.536:2	0/1:1,64:30:65:0.985:2	./.	0/1:32,26:32:58:0.448:2	./.	./.	0/1:16,16:30:32:0.500:2
chr18	12674603	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:147,4:32:151:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr18	12695340	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr18	12718593	rs2302768	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,33:30:64:0.516:2	0/1:12,19:30:31:0.613:2	./.	0/1:57,38:30:95:0.400:2	0/1:24,16:30:40:0.400:2	0/1:0,51:30:51:1.00:2	./.	0/1:40,33:30:73:0.452:2	./.	./.	0/1:40,32:30:72:0.444:2
chr18	12720580	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:34:56:0.071:2	./.
chr18	12794417	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:165,4:31:169:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr18	12802055	.	T	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.	./.	0/1:154,6:31:160:0.038:2	0/1:104,4:32:108:0.037:2	./.	./.	./.	./.
chr18	12817218	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:32:121:0.033:2	./.
chr18	12817326	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,6:30:151:0.040:2	./.	./.	./.
chr18	12817335	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,6:32:130:0.046:2	./.	./.	./.
chr18	12859225	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,4:33:61:0.066:2	./.	./.	./.	./.	./.	./.
chr18	12984144	rs6505776	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:60,47:31:107:0.439:2	0/1:30,14:32:44:0.318:2	0/1:1,4:33:5:0.800:2	./.	./.	0/1:46,32:31:79:0.410:2	0/1:2,46:32:48:0.958:2	0/1:47,34:32:81:0.420:2	0/1:77,41:32:118:0.347:2	0/1:0,66:31:66:1.00:2	0/1:65,69:32:134:0.515:2
chr18	13001512	rs4499304	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:19,13:29:32:0.406:2	0/1:18,9:31:27:0.333:2	0/1:0,3:33:3:1.00:2	./.	./.	./.	0/1:12,14:31:26:0.538:2	./.	0/1:18,6:31:24:0.250:2	0/1:0,29:31:29:1.00:2	0/1:19,27:31:46:0.587:2
chr18	13001523	rs11080618	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	0/1:12,13:32:25:0.520:2	./.	0/1:18,9:34:27:0.333:2	0/1:18,12:32:30:0.400:2	0/1:19,26:33:45:0.578:2
chr18	13008497	rs149216711	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,73:33:154:0.474:2
chr18	13029789	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,4:31:100:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr18	13056162	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:31:40:0.100:2	./.	./.	./.	./.	./.
chr18	13056333	rs2282541	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,12:31:13:0.923:2	./.	./.	./.	0/1:95,92:31:187:0.492:2	./.	0/1:51,74:32:125:0.592:2	0/1:49,31:32:80:0.388:2	0/1:68,43:32:111:0.387:2
chr18	13056682	rs2282542	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,29:30:48:0.604:2	./.	0/1:43,22:31:65:0.338:2	./.	./.	./.
chr18	13068109	rs7228940	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,12:30:36:0.333:2	./.	0/1:24,21:32:45:0.467:2	./.	./.	./.
chr18	13068132	rs578208	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:26,21:32:47:0.447:2	0/1:20,4:32:24:0.167:2	0/1:0,7:32:7:1.00:2	./.	./.	0/1:32,10:31:42:0.238:2	0/1:0,60:32:60:1.00:2	0/1:29,23:32:52:0.442:2	0/1:19,15:32:34:0.441:2	0/1:0,36:32:36:1.00:2	0/1:30,14:30:44:0.318:2
chr18	13068339	rs75368222	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,10:30:23:0.435:2	./.	./.	./.	./.	./.	./.
chr18	13069782	rs6505780	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:16,17:32:33:0.515:2	0/1:14,26:32:40:0.650:2	0/1:0,6:32:6:1.00:2	./.	./.	0/1:26,26:30:52:0.500:2	0/1:2,21:32:23:0.913:2	0/1:25,20:31:45:0.444:2	0/1:35,21:32:56:0.375:2	0/1:0,47:31:47:1.00:2	0/1:33,16:33:49:0.327:2
chr18	13072755	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:33:181:0.022:2
chr18	13087145	rs368997588	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,16:31:50:0.320:2	./.	./.	./.	./.	./.	./.
chr18	13095591	rs56913743	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,33:31:70:0.471:2	./.	0/1:37,39:30:76:0.513:2	./.	./.	./.
chr18	13095609	rs474337	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,42:30:81:0.519:2	0/1:34,17:30:51:0.333:2	0/1:0,12:31:12:1.00:2	0/1:102,4:32:106:0.038:2	./.	0/1:55,45:31:100:0.450:2	0/1:4,78:30:82:0.951:2	0/1:46,45:30:91:0.495:2	0/1:56,51:31:107:0.477:2	0/1:0,88:30:89:1.00:2	0/1:44,45:30:89:0.506:2
chr18	13100326	rs74340616	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,27:32:60:0.450:2
chr18	13116432	rs1786263	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:22,22:32:44:0.500:2	0/1:9,9:33:18:0.500:2	0/1:0,5:33:5:1.00:2	./.	./.	0/1:23,31:32:54:0.574:2	0/1:0,46:32:46:1.00:2	0/1:43,46:33:89:0.517:2	0/1:25,29:34:54:0.537:2	0/1:0,75:33:75:1.00:2	0/1:32,37:33:69:0.536:2
chr18	13117640	rs145843566	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:31:9:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.
chr18	13666617	rs59211767	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,73:32:165:0.442:2	./.	./.	./.	./.
chr18	13681962	rs35493157	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:30:6:0.500:2	./.	./.	./.	./.	./.	./.	0/1:30,33:32:63:0.524:2	./.
chr18	13825842	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,4:30:92:0.043:2	./.	./.	./.	./.	./.	./.
chr18	13826007	rs2236699	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,36:32:66:0.545:2	./.
chr18	13826088	rs17848292	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,13:30:23:0.565:2	./.	./.	./.	./.	0/1:83,114:31:197:0.579:2	0/1:84,103:31:187:0.551:2	0/1:85,66:31:151:0.437:2	./.
chr18	13826139	rs45613135	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,58:33:172:0.337:2
chr18	13826391	rs2236700	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,74:31:135:0.548:2	0/1:64,58:33:122:0.475:2	0/1:0,118:32:118:1.00:2	./.
chr18	13826508	rs2236701	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,7:32:18:0.389:2	./.	./.	./.	0/1:193,4:32:197:0.020:2	0/1:94,104:32:198:0.525:2	0/1:63,67:33:130:0.515:2	0/1:0,111:33:111:1.00:2	./.
chr18	13885382	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,4:31:36:0.111:2	./.	./.	./.	./.	./.	./.
chr18	13885561	rs28926177	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,54:32:125:0.432:2	0/1:49,27:31:76:0.355:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	14105016	rs61609068	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,18:31:26:0.692:2	./.	0/1:15,13:30:28:0.464:2	0/1:2,15:30:17:0.882:2	0/1:23,6:30:29:0.207:2	0/1:29,17:32:46:0.370:2	0/1:13,12:30:25:0.480:2	./.
chr18	14105730	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,12:32:22:0.545:2	0/1:15,9:32:24:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	14105844	rs112854357	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,27:32:55:0.491:2	./.	./.	./.	./.	./.	./.
chr18	14105853	rs8094412	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,40:31:92:0.435:2	./.	./.	./.	0/1:42,17:30:59:0.288:2	0/1:36,41:31:77:0.532:2	0/1:41,39:31:80:0.488:2	./.
chr18	14105923	rs2159940	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:33:63:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,82:33:82:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,47:33:47:1.00:2	0/1:0,56:33:56:1.00:2	0/1:0,90:34:90:1.00:2	0/1:0,76:33:76:1.00:2	0/1:1,106:33:107:0.991:2
chr18	14106039	rs62086326	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,11:32:11:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	0/1:6,5:34:11:0.455:2	./.	0/1:4,8:33:12:0.667:2
chr18	14106304	.	T	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:142,6:32:148:0.041:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,14:31:145:0.097:2	0/1:189,6:32:195:0.031:2
chr18	14106342	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,43:30:148:0.291:2	./.
chr18	14179603	rs4797872	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,7:32:20:0.350:2	0/1:4,4:30:8:0.500:2	0/1:0,2:35:2:1.00:2	0/1:25,9:31:34:0.265:2	0/1:0,20:32:20:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,12:33:12:1.00:2	0/1:1,23:32:24:0.958:2	0/1:13,3:36:16:0.188:2	0/1:5,9:30:14:0.643:2	0/1:0,12:32:12:1.00:2
chr18	14183680	rs75090388	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:98,4:33:103:0.039:2	./.	./.	0/1:154,10:32:164:0.061:2	0/1:69,5:31:75:0.068:2	0/1:121,16:32:137:0.117:2	0/1:74,15:32:89:0.169:2	./.	0/1:160,7:29:167:0.042:2	0/1:100,4:32:104:0.038:2	0/1:157,12:30:169:0.071:2
chr18	14183710	rs74415894	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:60,16:33:76:0.211:2	0/1:38,15:32:53:0.283:2	./.	0/1:69,22:33:91:0.242:2	0/1:24,17:32:41:0.415:2	0/1:65,19:33:84:0.226:2	0/1:33,4:29:37:0.108:2	0/1:50,15:32:65:0.231:2	0/1:78,21:34:99:0.212:2	0/1:43,17:31:60:0.283:2	0/1:92,20:34:112:0.179:2
chr18	14183720	rs565541	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,19:31:65:0.292:2	0/1:32,13:32:45:0.289:2	0/1:3,9:31:12:0.750:2	0/1:49,24:31:73:0.329:2	0/1:14,18:31:32:0.563:2	0/1:22,51:31:73:0.699:2	0/1:7,27:31:34:0.794:2	0/1:22,35:30:57:0.614:2	0/1:55,19:33:74:0.257:2	0/1:36,17:32:53:0.321:2	0/1:16,73:32:89:0.820:2
chr18	14183734	rs62085005	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:41,7:32:48:0.146:2	0/1:22,8:32:30:0.267:2	./.	0/1:38,16:32:54:0.296:2	0/1:12,3:29:16:0.200:2	0/1:39,13:31:52:0.250:2	0/1:23,8:33:31:0.258:2	0/1:25,7:32:32:0.219:2	0/1:34,13:33:47:0.277:2	0/1:27,8:31:35:0.229:2	0/1:62,8:31:70:0.114:2
chr18	14183747	rs62085006	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:23,4:32:27:0.148:2	./.	0/1:30,7:33:37:0.189:2	./.	0/1:37,7:31:44:0.159:2	0/1:17,3:31:20:0.150:2	0/1:19,6:32:25:0.240:2	0/1:28,6:33:34:0.176:2	0/1:19,7:30:26:0.269:2	0/1:52,6:33:58:0.103:2
chr18	14183978	rs77403707	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:27,3:31:31:0.100:2	./.	0/1:49,12:29:62:0.197:2	./.	0/1:65,10:28:77:0.133:2	0/1:46,8:24:55:0.148:2	./.	./.	./.	0/1:56,9:22:66:0.138:2
chr18	14183979	rs74732432	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,11:29:62:0.177:2	./.	0/1:67,10:30:77:0.130:2	0/1:49,7:28:56:0.125:2	0/1:63,5:28:68:0.074:2	./.	./.	0/1:59,10:27:70:0.145:2
chr18	14184005	rs4101175	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:63,5:28:68:0.074:2	0/1:39,5:31:44:0.114:2	./.	0/1:80,19:32:99:0.192:2	./.	0/1:88,15:30:103:0.146:2	0/1:59,8:31:67:0.119:2	./.	0/1:106,5:31:111:0.045:2	0/1:94,5:31:99:0.051:2	0/1:91,14:30:105:0.133:2
chr18	14184043	rs4101176	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:64,5:31:69:0.072:2	./.	0/1:145,17:32:162:0.105:2	./.	0/1:142,16:31:158:0.101:2	0/1:127,7:31:134:0.052:2	0/1:190,6:31:196:0.031:2	0/1:173,6:28:179:0.034:2	0/1:149,6:31:155:0.039:2	0/1:166,17:31:184:0.093:2
chr18	14184079	rs3897592	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:74,8:29:83:0.098:2	./.	0/1:166,16:32:182:0.088:2	0/1:118,7:33:125:0.056:2	0/1:138,20:32:158:0.127:2	0/1:130,9:30:139:0.065:2	0/1:181,7:32:189:0.037:2	0/1:177,6:31:183:0.033:2	0/1:160,6:29:166:0.036:2	0/1:173,19:32:192:0.099:2
chr18	14184100	rs200011373	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:73,6:31:79:0.076:2	./.	0/1:155,7:32:162:0.043:2	0/1:99,7:32:106:0.066:2	0/1:130,15:31:145:0.103:2	0/1:124,8:29:132:0.061:2	0/1:147,5:31:152:0.033:2	0/1:152,6:32:158:0.038:2	./.	0/1:166,16:32:182:0.088:2
chr18	14511923	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,6:30:194:0.031:2	./.	./.	./.
chr18	14511944	rs71362458	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,6:29:196:0.031:2	./.	./.	./.
chr18	14513663	rs369185563	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:113,4:31:117:0.034:2	./.	./.	./.	./.	./.	./.
chr18	14513675	rs371810308	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:163,5:31:168:0.030:2	0/1:137,7:32:145:0.049:2	./.	0/1:99,4:32:103:0.039:2	./.	./.	./.	./.
chr18	14513734	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:191,5:32:196:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr18	14513764	rs201788045	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,10:32:117:0.085:2	./.	./.	0/1:165,4:32:169:0.024:2	./.
chr18	14513781	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:131,14:32:145:0.097:2	0/1:106,7:32:113:0.062:2	./.	0/1:128,17:32:145:0.117:2	./.	0/1:126,7:32:133:0.053:2	0/1:77,8:32:85:0.094:2	./.	./.	0/1:119,31:32:150:0.207:2	0/1:161,16:32:177:0.090:2
chr18	14535001	.	G	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:159,38:32:197:0.193:2	0/1:152,38:32:191:0.200:2	./.	./.	./.	0/1:128,58:32:186:0.312:2	0/1:177,17:31:194:0.088:2	0/1:187,10:33:197:0.051:2
chr18	14537949	rs7505568	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,48:31:106:0.453:2	./.	./.	./.	./.	./.	./.
chr18	14537970	rs148283099	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,72:30:186:0.387:2	./.	./.	./.	./.	./.
chr18	14542775	rs201022558	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:118,68:30:186:0.366:2	./.	./.	./.	./.	./.	./.
chr18	14542791	rs201849570	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:130,41:30:171:0.240:2	0/1:137,34:30:171:0.199:2	./.	0/1:170,10:30:180:0.056:2	0/1:166,18:29:184:0.098:2	0/1:172,13:29:185:0.070:2	0/1:179,8:29:187:0.043:2	0/1:171,16:28:187:0.086:2	./.	0/1:169,24:30:194:0.124:2	0/1:155,25:30:180:0.139:2
chr18	14542798	rs368540688	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:165,6:31:171:0.035:2	./.	./.	0/1:177,7:31:184:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr18	14542867	rs200779556	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,77:29:168:0.458:2	0/1:99,82:29:181:0.453:2	0/1:24,7:29:31:0.226:2	0/1:136,44:29:180:0.244:2	0/1:114,73:30:187:0.390:2	0/1:128,60:30:188:0.319:2	0/1:123,29:30:152:0.191:2	0/1:123,56:30:179:0.313:2	./.	0/1:104,42:30:148:0.288:2	0/1:106,50:30:156:0.321:2
chr18	14542890	rs45469098	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:106,75:30:183:0.414:2	0/1:109,69:28:178:0.388:2	./.	0/1:109,72:29:181:0.398:2	0/1:159,33:28:193:0.172:2	./.	0/1:67,121:29:188:0.644:2	0/1:56,120:29:176:0.682:2	0/1:74,59:30:133:0.444:2	0/1:74,110:30:184:0.598:2	0/1:78,95:27:174:0.549:2
chr18	14542909	rs370268513	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,103:32:177:0.585:2	0/1:73,100:32:173:0.578:2	0/1:21,15:31:36:0.417:2	0/1:123,53:31:176:0.301:2	0/1:87,104:32:191:0.545:2	0/1:112,77:31:189:0.407:2	0/1:126,67:31:193:0.347:2	0/1:121,60:32:181:0.331:2	./.	0/1:104,71:31:175:0.406:2	0/1:105,68:32:173:0.393:2
chr18	14542931	rs45554841	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:135,35:29:170:0.206:2	./.	./.	./.	./.	./.	./.
chr18	14542949	rs9807555	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:151,25:30:176:0.142:2	./.	./.	./.	./.	./.	./.
chr18	14542979	rs200806970	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,93:30:166:0.560:2	0/1:67,92:30:159:0.579:2	0/1:17,13:29:30:0.433:2	0/1:126,49:30:175:0.280:2	0/1:87,96:30:183:0.525:2	0/1:111,78:30:189:0.413:2	0/1:115,46:30:161:0.286:2	0/1:111,68:30:179:0.380:2	./.	0/1:90,52:30:142:0.366:2	0/1:94,61:29:155:0.394:2
chr18	14543039	rs45570841	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:154,14:31:168:0.083:2	0/1:108,24:32:132:0.182:2	./.	0/1:181,7:33:188:0.037:2	0/1:100,15:31:116:0.130:2	0/1:172,12:31:184:0.065:2	0/1:139,10:32:149:0.067:2	0/1:168,10:30:178:0.056:2	./.	0/1:167,13:33:180:0.072:2	0/1:165,10:32:175:0.057:2
chr18	14543057	rs9807633	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,38:31:90:0.422:2	./.	./.	./.	./.	./.	./.
chr18	14543092	rs45502401	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:152,4:33:156:0.026:2	./.	./.	0/1:101,4:31:105:0.038:2	./.	./.	./.	./.	./.	./.
chr18	14543098	rs11873462	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,35:30:107:0.327:2	./.	0/1:164,4:31:168:0.024:2	./.	./.	./.	./.
chr18	14543139	rs28535987	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,153:31:153:1.00:2	0/1:0,121:32:121:1.00:2	0/1:14,8:30:22:0.364:2	0/1:2,165:31:167:0.988:2	0/1:0,89:31:89:1.00:2	0/1:0,163:32:164:1.00:2	0/1:0,141:32:141:1.00:2	0/1:1,157:32:158:0.994:2	0/1:0,152:32:152:1.00:2	0/1:0,138:31:138:1.00:2	0/1:0,144:30:144:1.00:2
chr18	14752957	rs12457503	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,81:32:82:1.00:2	0/1:0,48:32:48:1.00:2	./.	./.	0/1:68,46:31:114:0.404:2	0/1:56,46:31:102:0.451:2	0/1:4,85:31:89:0.955:2	0/1:79,77:31:156:0.494:2	0/1:85,36:32:121:0.298:2	./.	0/1:0,80:32:80:1.00:2
chr18	14779969	rs9675365	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,25:33:52:0.481:2	0/1:17,16:33:33:0.485:2	0/1:0,6:33:6:1.00:2	0/1:35,13:32:48:0.271:2	0/1:9,18:33:27:0.667:2	0/1:27,31:32:58:0.534:2	./.	./.	./.	0/1:0,41:34:41:1.00:2	./.
chr18	14782551	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,6:31:109:0.055:2	./.	./.	./.
chr18	14791426	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:32:173:0.023:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	14791434	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,5:28:172:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	14791444	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:33:172:0.023:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,5:32:181:0.028:2
chr18	14796214	rs9303863	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:98,70:33:168:0.417:2	0/1:55,36:32:91:0.396:2	0/1:1,16:32:17:0.941:2	0/1:91,87:33:178:0.489:2	0/1:54,36:31:90:0.400:2	0/1:108,45:32:153:0.294:2	./.	./.	./.	0/1:1,154:33:155:0.994:2	./.
chr18	14796266	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,61:31:193:0.316:2	./.	./.	./.	./.	./.
chr18	14796396	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,30:31:87:0.345:2	./.	./.	./.	./.	./.
chr18	14797769	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:33:143:0.028:2	./.
chr18	14799113	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:32:73:0.055:2	./.	./.	./.	./.
chr18	14799260	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,5:34:124:0.040:2	./.	./.
chr18	14803745	rs200642743	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:154,25:32:180:0.140:2	0/1:97,14:32:111:0.126:2	0/1:15,8:32:23:0.348:2	0/1:86,27:32:113:0.239:2	0/1:87,26:31:113:0.230:2	0/1:158,27:32:185:0.146:2	./.	./.	./.	0/1:136,43:32:179:0.240:2	./.
chr18	14803798	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:191,5:31:196:0.026:2	./.	./.	./.	./.	./.	./.	0/1:181,4:33:185:0.022:2	./.	./.	./.
chr18	14828277	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,5:31:89:0.056:2	0/1:150,5:31:155:0.032:2	./.	./.	./.
chr18	14831448	rs187017186	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,7:33:26:0.269:2	./.	./.	./.	./.	./.	./.	./.	./.
chr18	14837214	rs71350521	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:33:135:0.030:2	./.	./.	./.	./.
chr18	14837242	rs2487262	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:33:153:0.026:2	./.	./.	./.	./.
chr18	14837639	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,7:32:199:0.035:2	0/1:179,14:30:193:0.073:2	0/1:171,23:31:194:0.119:2	./.	0/1:182,13:30:195:0.067:2	./.	0/1:182,5:32:188:0.027:2	0/1:185,5:32:190:0.026:2
chr18	14837640	.	A	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,7:33:199:0.035:2	0/1:177,14:31:191:0.073:2	0/1:172,23:31:195:0.118:2	./.	0/1:182,13:30:195:0.067:2	./.	0/1:184,5:31:189:0.026:2	0/1:182,5:32:187:0.027:2
chr18	14837641	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:191,7:31:198:0.035:2	0/1:179,14:31:193:0.073:2	0/1:170,23:31:193:0.119:2	./.	0/1:181,14:30:195:0.072:2	./.	0/1:186,5:32:191:0.026:2	0/1:180,5:31:185:0.027:2
chr18	14848769	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,5:34:80:0.063:2	./.	0/1:68,4:31:72:0.056:2	./.
chr18	14848786	rs368096733	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,7:29:91:0.077:2	0/1:53,4:31:57:0.070:2	0/1:77,4:32:81:0.049:2	./.	0/1:78,10:32:89:0.114:2	./.	0/1:77,4:30:81:0.049:2	0/1:106,6:23:112:0.054:2
chr18	14848820	rs4090319	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:61,44:32:105:0.419:2	0/1:40,28:32:68:0.412:2	./.	0/1:62,62:31:124:0.500:2	0/1:45,34:32:79:0.430:2	0/1:54,54:30:108:0.500:2	0/1:3,61:32:64:0.953:2	0/1:22,112:31:134:0.836:2	0/1:12,125:33:137:0.912:2	./.	0/1:21,148:32:169:0.876:2
chr18	14848821	rs28555630	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,52:32:105:0.495:2	0/1:33,37:32:70:0.529:2	0/1:0,4:32:4:1.00:2	0/1:79,47:31:126:0.373:2	0/1:43,34:31:77:0.442:2	0/1:65,47:32:112:0.420:2	./.	./.	./.	0/1:10,86:32:96:0.896:2	./.
chr18	14848863	rs71323606	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:178,6:33:184:0.033:2	./.	./.	0/1:192,6:32:198:0.030:2	0/1:121,6:32:127:0.047:2	./.	./.	0/1:190,9:32:199:0.045:2	0/1:187,10:33:197:0.051:2	0/1:192,6:32:198:0.030:2	0/1:184,16:31:200:0.080:2
chr18	14850225	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,3:31:35:0.086:2	./.	./.	./.	./.	./.	./.
chr18	14850251	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,3:35:40:0.075:2	./.	./.	./.	./.	./.	./.
chr18	14850375	rs3126404	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,9:32:31:0.290:2	0/1:9,7:32:16:0.438:2	./.	0/1:30,21:30:52:0.412:2	0/1:10,8:29:18:0.444:2	0/1:32,20:30:52:0.385:2	./.	./.	./.	0/1:0,21:32:21:1.00:2	./.
chr18	14851756	rs148887033	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:75,19:33:94:0.202:2	0/1:45,15:32:60:0.250:2	0/1:0,7:33:7:1.00:2	0/1:93,22:32:115:0.191:2	0/1:44,17:32:61:0.279:2	0/1:84,22:32:106:0.208:2	./.	./.	./.	0/1:0,34:33:34:1.00:2	./.
chr18	14851946	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:158,6:33:164:0.037:2	./.	./.	./.	0/1:159,4:34:163:0.025:2	./.	./.	./.
chr18	14852016	.	A	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:96,11:31:107:0.103:2	0/1:67,5:32:72:0.069:2	./.	./.	0/1:102,4:31:106:0.038:2	./.	0/1:66,4:30:70:0.057:2	./.	./.	./.	0/1:138,8:32:146:0.055:2
chr18	14852114	rs138537952	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,84:33:169:0.497:2	./.	./.
chr18	14852335	rs12386087	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:33:72:1.00:2	0/1:0,34:32:35:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,40:32:40:1.00:2	0/1:1,57:32:58:0.983:2	0/1:0,24:33:24:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,62:33:62:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,87:32:87:1.00:2
chr18	18533632	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:182,10:33:192:0.052:2	./.	./.	./.	./.	./.	./.	./.
chr18	18534878	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:33:191:0.021:2
chr18	18534948	rs201390233	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,5:33:190:0.026:2	./.	0/1:179,11:33:190:0.058:2	0/1:154,8:31:162:0.049:2	0/1:181,11:33:192:0.057:2	./.
chr18	18535139	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,30:32:150:0.200:2	./.
chr18	18622539	rs56085230	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,38:32:97:0.392:2	./.	./.	./.	./.	./.	./.	./.
chr18	19079853	rs4800747	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:32:24:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,21:32:21:1.00:2
chr18	19093791	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:32:198:0.020:2	./.	./.	./.
chr18	19100717	rs17720074	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,23:29:52:0.442:2	0/1:41,41:28:82:0.500:2	./.	0/1:56,54:29:110:0.491:2	./.	./.	./.
chr18	19110421	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,4:31:34:0.121:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	19153494	rs973730	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:32:65:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,17:31:17:1.00:2	0/1:3,59:32:62:0.952:2	0/1:0,66:31:66:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,47:32:47:1.00:2	0/1:43,16:32:59:0.271:2	0/1:0,51:32:51:1.00:2	0/1:35,20:32:55:0.364:2	./.
chr18	19154143	rs13381941	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:62,43:32:105:0.410:2	0/1:23,19:31:42:0.452:2	./.	0/1:52,67:32:119:0.563:2	0/1:52,35:31:87:0.402:2	./.	./.	0/1:0,109:32:109:1.00:2	./.	0/1:0,83:33:83:1.00:2	0/1:1,100:32:101:0.990:2
chr18	19154233	rs35087820	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,41:33:94:0.436:2	./.	./.
chr18	19395617	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:27:60:0.067:2	./.	./.	./.	./.	./.
chr18	19409020	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,6:33:127:0.048:2	./.	./.
chr18	19995731	rs9946136	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:26,24:30:50:0.480:2	0/1:10,5:28:15:0.333:2	0/1:1,2:32:3:0.667:2	./.	./.	0/1:35,30:30:65:0.462:2	0/1:3,28:30:31:0.903:2	./.	0/1:19,15:30:34:0.441:2	./.	./.
chr18	19995753	rs9946145	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:30:63:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,4:31:4:1.00:2	0/1:17,14:29:31:0.452:2	0/1:0,29:28:29:1.00:2	0/1:26,26:30:52:0.500:2	0/1:15,12:29:27:0.444:2	0/1:2,34:29:36:0.944:2	0/1:0,33:31:33:1.00:2	0/1:18,16:31:34:0.471:2	0/1:0,54:29:54:1.00:2
chr18	19996011	rs7227477	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,7:32:21:0.333:2	0/1:2,98:31:100:0.980:2	0/1:38,18:31:56:0.321:2	0/1:59,38:31:97:0.392:2	./.	./.	0/1:77,55:31:132:0.417:2	0/1:55,28:32:83:0.337:2	0/1:84,62:31:146:0.425:2
chr18	19996550	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,3:34:52:0.058:2	./.	./.	./.
chr18	19997043	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,4:34:196:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr18	19997525	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,5:31:40:0.125:2	./.	0/1:49,4:32:53:0.075:2	./.	./.	./.
chr18	19997570	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,7:30:36:0.194:2	0/1:39,10:28:49:0.204:2	./.	0/1:47,4:31:51:0.078:2	./.	./.	./.
chr18	19997572	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,3:34:49:0.061:2	./.	./.	./.	./.	./.
chr18	19997580	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,7:30:37:0.189:2	0/1:42,8:31:50:0.160:2	./.	0/1:45,4:32:49:0.082:2	./.	./.	./.
chr18	19997806	rs368124671	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,36:32:76:0.474:2	./.	./.	./.
chr18	20577669	rs17852769	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:89,65:32:154:0.422:2	0/1:37,24:32:61:0.393:2	0/1:6,8:31:14:0.571:2	0/1:81,67:32:148:0.453:2	0/1:72,57:31:129:0.442:2	./.	./.	./.	./.	./.	./.
chr18	20794019	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:121,4:30:125:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr18	20936614	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,6:32:45:0.133:2	./.	./.	./.	./.	./.	./.	./.
chr18	20953720	rs8099409	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,14:34:31:0.452:2	0/1:12,10:33:22:0.455:2	0/1:3,3:32:6:0.500:2	0/1:0,44:32:44:1.00:2	0/1:10,15:31:25:0.600:2	./.	0/1:32,11:31:43:0.256:2	./.	0/1:0,48:32:48:1.00:2	0/1:0,23:32:23:1.00:2	./.
chr18	20965034	rs62095860	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,21:32:41:0.512:2	0/1:13,8:31:21:0.381:2	./.	./.	./.	0/1:0,25:30:25:1.00:2	0/1:15,15:31:30:0.500:2	./.	./.	./.	0/1:0,29:31:29:1.00:2
chr18	21054994	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:31:143:0.028:2	./.	./.	./.	./.	./.
chr18	21054996	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:31:143:0.028:2	./.	./.	./.	./.	./.
chr18	21100240	rs1367083	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:50,48:33:98:0.490:2	0/1:28,35:32:63:0.556:2	0/1:5,9:32:14:0.643:2	./.	0/1:1,93:32:94:0.989:2	./.	0/1:47,58:31:105:0.552:2	0/1:78,44:31:122:0.361:2	0/1:0,119:32:119:1.00:2	0/1:0,67:32:67:1.00:2	./.
chr18	21109250	rs1788825	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:29:27:1.00:2	0/1:0,14:28:14:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,34:28:34:1.00:2	0/1:0,33:29:33:1.00:2	./.	0/1:0,27:29:27:1.00:2	0/1:0,26:29:26:1.00:2	0/1:0,25:27:25:1.00:2	0/1:0,25:30:25:1.00:2	./.
chr18	21112206	rs1805084	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:101,89:31:190:0.468:2	./.	./.	./.	./.	./.	./.
chr18	21119777	rs1140458	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:26,30:30:56:0.536:2	0/1:23,20:31:43:0.465:2	0/1:11,6:31:17:0.353:2	./.	0/1:0,115:31:115:1.00:2	./.	0/1:103,60:31:163:0.368:2	0/1:86,66:31:152:0.434:2	0/1:0,104:32:104:1.00:2	0/1:1,79:31:80:0.988:2	./.
chr18	21120444	rs1805082	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:15,11:33:26:0.423:2	0/1:8,11:32:19:0.579:2	0/1:0,2:32:2:1.00:2	./.	0/1:2,34:31:36:0.944:2	./.	0/1:19,8:32:27:0.296:2	0/1:35,23:32:58:0.397:2	0/1:0,47:33:47:1.00:2	0/1:0,37:33:37:1.00:2	./.
chr18	21124945	.	C	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,35:31:35:1.00:2	./.	0/1:0,33:32:33:1.00:2	0/1:50,25:32:75:0.333:2	0/1:0,69:33:69:1.00:2	0/1:0,24:33:24:1.00:2	./.
chr18	21136274	rs77815278	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,15:11:76:0.197:2	./.	0/1:79,13:12:92:0.141:2	./.	0/1:99,23:13:122:0.189:2	./.	./.	0/1:77,13:12:90:0.144:2
chr18	21137139	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:33:85:0.047:2
chr18	21140432	rs1805081	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:34,12:27:46:0.261:2	0/1:14,9:29:23:0.391:2	./.	./.	0/1:43,24:27:67:0.358:2	./.	./.	0/1:41,22:29:63:0.349:2	0/1:1,55:30:56:0.982:2	0/1:23,35:29:58:0.603:2	./.
chr18	21148863	rs12970899	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:105,62:31:167:0.371:2	0/1:81,86:30:167:0.515:2	0/1:20,17:30:37:0.459:2	0/1:0,156:30:156:1.00:2	./.	./.	0/1:105,83:30:188:0.441:2	./.	./.	./.	./.
chr18	21153530	rs144415945	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,44:29:89:0.494:2	./.	./.	./.	./.
chr18	21214102	rs35228796	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,25:32:57:0.446:2	./.
chr18	21229101	rs149385295	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,65:32:126:0.516:2	./.
chr18	21402298	rs17187262	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,35:31:92:0.380:2	./.	./.	./.	0/1:82,56:32:138:0.406:2
chr18	21413869	rs9962023	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,62:32:135:0.459:2	0/1:47,48:31:95:0.505:2	0/1:0,19:30:19:1.00:2	0/1:0,173:32:173:1.00:2	0/1:1,176:31:177:0.994:2	0/1:0,185:32:185:1.00:2	0/1:116,74:32:190:0.389:2	0/1:2,176:32:178:0.989:2	0/1:1,177:32:178:0.994:2	0/1:0,164:32:164:1.00:2	0/1:116,66:31:182:0.363:2
chr18	21424986	rs12457323	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,28:31:63:0.444:2	./.	./.	./.	0/1:54,39:30:93:0.419:2
chr18	21425076	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:34:59:0.068:2	./.	./.	./.	./.	./.
chr18	21437885	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,6:32:134:0.045:2
chr18	21437931	rs867449	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,43:31:77:0.558:2	0/1:23,26:32:49:0.531:2	0/1:0,14:32:14:1.00:2	0/1:0,106:32:106:1.00:2	0/1:1,91:31:92:0.989:2	0/1:0,90:32:90:1.00:2	0/1:50,43:32:93:0.462:2	0/1:3,98:31:101:0.970:2	0/1:1,77:32:78:0.987:2	0/1:0,86:32:86:1.00:2	0/1:44,43:32:87:0.494:2
chr18	21441717	rs12965685	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,41:31:67:0.612:2	0/1:28,28:31:56:0.500:2	0/1:0,8:32:8:1.00:2	0/1:0,96:31:96:1.00:2	0/1:1,91:31:93:0.989:2	0/1:0,96:31:96:1.00:2	0/1:38,53:31:91:0.582:2	0/1:3,89:31:92:0.967:2	0/1:1,90:32:91:0.989:2	0/1:1,84:32:85:0.988:2	0/1:33,39:31:72:0.542:2
chr18	21453118	rs138914132	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:32:170:0.024:2	./.	./.	./.
chr18	21469993	rs958631	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,9:32:34:0.265:2	./.	./.	./.	0/1:58,39:32:97:0.402:2
chr18	21481233	rs1154226	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,24:31:40:0.600:2	0/1:12,7:30:19:0.368:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	21483082	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:31:60:0.067:2	./.	./.	./.	./.	./.
chr18	21511089	rs1154233	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:29:38:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,37:29:37:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,44:30:44:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,23:29:23:1.00:2	0/1:0,40:29:40:1.00:2
chr18	21512191	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,58:29:131:0.443:2	0/1:35,45:28:80:0.563:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	21644091	rs56229252	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,29:30:59:0.492:2	0/1:18,26:30:44:0.591:2	./.	./.	./.	./.	0/1:32,18:31:50:0.360:2	./.
chr18	21644136	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:33:67:0.060:2	./.
chr18	21710321	rs12970083	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:32:29:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,55:32:55:1.00:2
chr18	21723168	rs150516148	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,4:30:61:0.066:2	./.	./.	./.	./.	./.	./.	./.
chr18	21736933	rs1049683	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,43:33:89:0.483:2	0/1:34,18:31:52:0.346:2	0/1:0,22:32:22:1.00:2	0/1:1,108:33:109:0.991:2	0/1:0,90:32:90:1.00:2	0/1:48,77:32:125:0.616:2	0/1:56,48:32:104:0.462:2	0/1:88,61:33:149:0.409:2	0/1:1,134:34:135:0.993:2	0/1:0,101:32:101:1.00:2	0/1:0,110:33:110:1.00:2
chr18	21739725	rs1049684	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,35:30:67:0.522:2	0/1:32,36:29:69:0.529:2	./.	0/1:67,51:29:118:0.432:2	0/1:62,24:30:86:0.279:2	0/1:47,35:29:82:0.427:2	0/1:37,41:28:78:0.526:2	0/1:53,58:30:111:0.523:2	0/1:59,44:30:103:0.427:2	0/1:62,50:30:112:0.446:2	0/1:48,38:29:86:0.442:2
chr18	21747400	rs35693789	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,17:32:48:0.354:2	0/1:11,5:31:16:0.313:2	./.	./.	./.	0/1:20,32:32:52:0.615:2	./.	./.	./.	./.	./.
chr18	21752366	rs2077984	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,86:29:163:0.528:2
chr18	21752415	rs45467295	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,49:32:102:0.480:2	./.
chr18	21805095	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,45:32:83:0.542:2	./.
chr18	21891975	rs2337961	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:46,31:29:77:0.403:2	0/1:19,29:29:48:0.604:2	./.	0/1:30,38:30:68:0.559:2	./.	./.	./.	./.	./.	./.	./.
chr18	21897189	rs34306542	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,29:32:52:0.558:2	./.	./.	./.	./.	./.	./.	./.
chr18	21898556	rs12955338	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,55:33:104:0.529:2	./.	./.	./.	./.	./.	./.	./.
chr18	21901628	rs34481824	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,41:29:65:0.631:2	./.	0/1:30,34:29:64:0.531:2	0/1:35,20:30:55:0.364:2	./.	./.	./.	./.
chr18	22020467	rs582234	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,23:31:53:0.434:2	./.	./.	./.	0/1:59,51:32:110:0.464:2	./.	./.
chr18	22020543	rs677688	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,117:32:117:1.00:2	0/1:0,57:31:57:1.00:2	0/1:11,7:32:18:0.389:2	0/1:0,103:32:103:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,139:32:139:1.00:2	0/1:3,84:32:87:0.966:2	0/1:0,120:32:120:1.00:2	0/1:0,136:33:136:1.00:2	0/1:69,46:32:115:0.400:2	0/1:2,111:32:113:0.982:2
chr18	22056766	rs11665084	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:106,75:31:181:0.414:2	0/1:55,56:32:111:0.505:2	./.	./.	./.	./.	0/1:85,67:31:152:0.441:2	./.	./.	./.	./.
chr18	22056970	rs11662595	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:48,39:30:87:0.448:2	0/1:18,18:29:36:0.500:2	./.	./.	./.	./.	0/1:35,39:29:74:0.527:2	./.	./.	./.	./.
chr18	22057269	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:33:199:0.020:2	./.	./.	./.	./.	./.
chr18	22642713	rs377709383	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,3:27:14:0.214:2	./.	./.	./.	./.	./.	./.	./.
chr18	22775185	rs1140026	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,27:32:70:0.386:2	./.	0/1:61,37:32:98:0.378:2	0/1:49,48:31:97:0.495:2	./.	./.	./.
chr18	22804320	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2	./.
chr18	22807479	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,5:32:133:0.038:2
chr18	23598284	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,19:32:37:0.514:2	./.
chr18	23670517	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:34:85:0.047:2	./.	./.
chr18	23854692	rs17224558	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,43:32:93:0.462:2	./.	./.	./.	./.	./.	./.
chr18	23865851	rs12456749	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,44:31:93:0.473:2	./.	./.	0/1:57,39:30:97:0.406:2	0/1:56,33:30:89:0.371:2	./.	0/1:38,22:31:60:0.367:2	./.
chr18	23865875	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,5:28:150:0.033:2
chr18	23866185	rs74947492	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,9:33:10:0.900:2	./.	./.	./.	./.	./.	./.	./.	0/1:18,14:34:32:0.438:2
chr18	23866349	rs3744961	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,12:29:36:0.333:2	./.	./.	./.	./.	./.	./.
chr18	23872235	rs12963653	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,52:32:115:0.452:2	./.	./.	0/1:38,38:33:76:0.500:2	0/1:48,50:33:98:0.510:2	./.	0/1:53,28:33:81:0.346:2	./.
chr18	23873435	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:30:91:0.044:2	./.	./.	./.	./.
chr18	23873463	rs1677016	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,132:33:132:1.00:2	0/1:2,80:33:82:0.976:2	0/1:0,13:32:13:1.00:2	0/1:82,52:33:134:0.388:2	0/1:41,41:32:82:0.500:2	0/1:0,142:32:142:1.00:2	0/1:36,43:32:80:0.544:2	0/1:60,54:32:114:0.474:2	0/1:0,135:33:135:1.00:2	0/1:71,45:33:116:0.388:2	0/1:1,140:33:141:0.993:2
chr18	23895336	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,3:31:19:0.158:2	./.
chr18	24442392	rs35248760	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,59:32:149:0.396:2	0/1:72,69:32:142:0.489:2	./.	0/1:80,72:33:152:0.474:2	0/1:92,64:32:156:0.410:2	./.	./.	0/1:62,61:32:124:0.496:2
chr18	24496913	rs182429803	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,52:32:110:0.473:2	./.	./.	./.
chr18	25543387	rs1041985	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,32:32:76:0.421:2	0/1:29,21:31:50:0.420:2	./.	./.	./.	0/1:51,64:32:115:0.557:2	./.	0/1:85,79:32:164:0.482:2	./.	0/1:0,84:32:84:1.00:2	0/1:50,53:32:103:0.515:2
chr18	25565082	rs1220144	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:31:66:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,69:30:69:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,99:30:99:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,81:30:81:1.00:2
chr18	25565186	rs202052912	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,19:32:28:0.679:2	./.
chr18	25570228	rs1628684	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:29:47:1.00:2	0/1:0,41:28:41:1.00:2	0/1:0,9:28:9:1.00:2	0/1:0,69:28:69:1.00:2	0/1:0,46:28:46:1.00:2	0/1:0,62:28:62:1.00:2	0/1:1,46:28:47:0.979:2	0/1:0,65:28:65:1.00:2	0/1:0,66:29:66:1.00:2	0/1:0,69:28:69:1.00:2	0/1:0,71:28:71:1.00:2
chr18	25616451	rs1944294	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:32:5:0.600:2	0/1:17,26:31:43:0.605:2	0/1:1,27:32:28:0.964:2	./.	./.	./.	0/1:8,12:33:20:0.600:2	./.	./.
chr18	28574472	rs35656385	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,41:31:107:0.383:2	0/1:62,70:32:132:0.530:2	./.	0/1:72,38:32:111:0.345:2	./.
chr18	28586957	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,6:33:108:0.056:2	./.	./.
chr18	28586964	rs1313586	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,32:28:74:0.432:2	0/1:22,13:29:35:0.371:2	./.	./.	./.	0/1:0,71:29:71:1.00:2	0/1:26,25:29:51:0.490:2	0/1:46,43:29:89:0.483:2	0/1:0,104:30:105:1.00:2	0/1:0,62:29:62:1.00:2	0/1:55,51:29:106:0.481:2
chr18	28588492	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,4:33:34:0.118:2	./.	./.	./.	./.	./.
chr18	28602378	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:34:157:0.025:2	./.	./.	./.	./.	./.
chr18	28610988	rs276938	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:74,47:32:121:0.388:2	0/1:26,37:33:63:0.587:2	./.	0/1:0,109:33:109:1.00:2	./.	0/1:2,97:32:99:0.980:2	./.	0/1:98,47:32:145:0.324:2	0/1:75,48:33:123:0.390:2	0/1:0,81:32:81:1.00:2	0/1:102,65:33:167:0.389:2
chr18	28611061	rs276937	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:61,30:31:91:0.330:2	0/1:17,23:32:40:0.575:2	./.	0/1:0,84:31:84:1.00:2	./.	0/1:1,70:31:71:0.986:2	./.	0/1:43,47:32:90:0.522:2	0/1:47,31:32:78:0.397:2	0/1:0,72:31:73:1.00:2	0/1:55,45:31:100:0.450:2
chr18	28611139	rs276936	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:32:30:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,52:33:52:1.00:2
chr18	28612229	rs2852003	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:31:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr18	28612233	rs114988341	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,36:31:98:0.367:2	./.	./.	./.
chr18	28648975	rs61731921	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,37:33:84:0.440:2	0/1:22,25:32:47:0.532:2	./.	./.	./.	0/1:48,43:31:91:0.473:2	./.	./.	./.	./.	./.
chr18	28649042	rs1893963	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,51:32:104:0.490:2
chr18	28672067	rs117812913	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,7:30:19:0.368:2	./.	./.	./.	./.	./.	./.	./.	./.
chr18	28673565	rs12954874	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,15:33:34:0.441:2	0/1:26,18:32:44:0.409:2	0/1:22,24:33:46:0.522:2	./.	./.
chr18	28710615	rs1816634	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:32:12:0.417:2	./.	./.	./.	./.	./.	./.	./.	0/1:63,51:33:114:0.447:2
chr18	28710619	rs985861	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:32:12:0.417:2	./.	./.	./.	./.	./.	./.	./.	0/1:64,53:31:117:0.453:2
chr18	28710807	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,4:30:39:0.103:2	./.
chr18	28710822	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,4:31:28:0.143:2	./.
chr18	28713994	rs28620831	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,48:31:114:0.421:2	./.	./.
chr18	28720147	rs17800159	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,74:31:160:0.463:2	./.	0/1:61,57:32:118:0.483:2	./.	0/1:74,55:31:129:0.426:2	./.	./.	./.
chr18	28722039	rs2577075	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,72:33:177:0.407:2	0/1:47,42:33:89:0.472:2	./.	./.	./.	0/1:99,71:32:170:0.418:2	./.	0/1:98,82:32:180:0.456:2	./.	./.	./.
chr18	28722103	rs2577074	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,62:33:147:0.422:2	0/1:46,40:33:86:0.465:2	./.	./.	./.	0/1:87,67:33:154:0.435:2	./.	0/1:59,87:33:146:0.596:2	./.	./.	./.
chr18	28722133	rs36081634	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,50:33:101:0.495:2	0/1:32,24:31:56:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	28734749	rs2249810	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:23,18:27:41:0.439:2	0/1:8,11:27:19:0.579:2	0/1:0,3:33:3:1.00:2	./.	0/1:0,23:27:23:1.00:2	0/1:0,50:28:50:1.00:2	0/1:18,8:26:26:0.308:2	0/1:25,20:28:45:0.444:2	./.	0/1:20,19:28:39:0.487:2	0/1:27,15:27:42:0.357:2
chr18	28737407	rs35338395	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,40:31:85:0.471:2	./.	./.	./.	./.	./.	./.
chr18	28898294	rs1426310	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:14,21:32:35:0.600:2	0/1:13,3:33:16:0.188:2	0/1:0,5:33:5:1.00:2	./.	./.	0/1:32,20:32:52:0.385:2	0/1:10,25:33:35:0.714:2	0/1:20,21:33:41:0.512:2	0/1:25,20:33:45:0.444:2	0/1:24,21:33:45:0.467:2	0/1:0,42:33:42:1.00:2
chr18	28913591	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,84:33:158:0.532:2	./.	./.	./.	./.	./.	./.	./.
chr18	28913599	rs12967407	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:62,37:30:100:0.374:2	0/1:29,41:30:70:0.586:2	0/1:0,17:30:18:1.00:2	./.	./.	0/1:69,55:31:124:0.444:2	0/1:57,77:30:134:0.575:2	0/1:112,72:30:184:0.391:2	0/1:74,76:31:151:0.507:2	0/1:63,71:30:136:0.530:2	0/1:1,136:31:139:0.993:2
chr18	28919779	rs8091003	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,24:32:50:0.480:2	./.
chr18	28919794	rs8091117	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,23:31:52:0.442:2	./.
chr18	28919884	rs16961689	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,12:32:36:0.333:2	./.
chr18	28919911	rs61730306	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,18:32:51:0.353:2	./.
chr18	28919913	rs34302455	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,18:31:52:0.346:2	./.
chr18	28923415	rs146919961	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,100:31:198:0.505:2	0/1:104,71:32:175:0.406:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	28934274	rs146192657	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,23:31:46:0.500:2	./.	./.	./.	./.
chr18	28934444	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:34:67:0.060:2	./.
chr18	28934681	rs3752095	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,174:31:176:0.989:2	0/1:0,144:30:144:1.00:2	./.	./.	0/1:74,97:31:172:0.567:2	0/1:88,67:31:156:0.432:2	./.
chr18	28934781	rs149729348	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,70:31:141:0.496:2	./.	./.	./.	./.	./.	./.	./.
chr18	28956904	rs36101975	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,24:32:61:0.393:2	0/1:30,15:32:45:0.333:2	0/1:3,73:31:76:0.961:2	./.	./.	./.	0/1:34,34:32:68:0.500:2	./.
chr18	28968371	rs16959856	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,19:32:51:0.373:2	0/1:14,13:32:27:0.481:2	0/1:0,13:30:13:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,33:30:33:1.00:2	0/1:19,16:31:35:0.457:2	0/1:0,51:32:51:1.00:2	0/1:15,17:30:32:0.531:2	0/1:35,37:31:72:0.514:2
chr18	28968959	rs9956865	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,18:30:58:0.310:2	0/1:16,20:31:36:0.556:2	0/1:1,4:30:5:0.800:2	0/1:0,60:31:60:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,56:31:56:1.00:2	0/1:46,33:30:79:0.418:2	0/1:0,48:32:48:1.00:2	0/1:51,22:30:73:0.301:2	0/1:41,30:31:71:0.423:2
chr18	28986333	rs4799570	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,52:33:101:0.515:2	0/1:28,28:32:56:0.500:2	0/1:0,15:33:15:1.00:2	0/1:0,90:33:90:1.00:2	0/1:2,87:32:89:0.978:2	0/1:0,94:32:94:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,107:33:107:1.00:2	0/1:0,86:34:86:1.00:2	0/1:56,43:32:99:0.434:2	0/1:50,62:33:112:0.554:2
chr18	28993183	rs12960081	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,54:29:112:0.482:2	0/1:38,33:29:71:0.465:2	0/1:0,23:29:23:1.00:2	0/1:57,65:29:122:0.533:2	./.	./.	0/1:4,134:30:138:0.971:2	./.	0/1:82,84:30:166:0.506:2	0/1:43,34:29:77:0.442:2	0/1:69,82:29:151:0.543:2
chr18	28993501	rs7234288	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,25:31:49:0.510:2	0/1:15,21:32:36:0.583:2	0/1:0,5:30:5:1.00:2	0/1:27,36:31:63:0.571:2	0/1:0,50:31:50:1.00:2	0/1:0,47:30:47:1.00:2	0/1:1,70:31:71:0.986:2	./.	0/1:0,56:32:56:1.00:2	0/1:28,18:32:46:0.391:2	0/1:26,31:31:57:0.544:2
chr18	29038536	rs7240789	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,17:31:28:0.607:2	./.	./.	./.	./.	./.	./.
chr18	29054100	rs72925163	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,17:31:50:0.340:2	./.	./.	./.	./.	./.	./.
chr18	29055635	rs117661169	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,21:31:40:0.525:2	./.	./.	./.	./.	./.	./.	./.
chr18	29055705	rs144985839	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,41:29:85:0.482:2	./.	./.	./.	./.	./.	./.
chr18	29055957	rs1380866	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:29:47:1.00:2	0/1:1,33:30:34:0.971:2	0/1:0,6:29:6:1.00:2	0/1:2,60:30:62:0.968:2	0/1:0,28:30:28:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,64:29:64:1.00:2	0/1:0,58:30:58:1.00:2	0/1:0,68:30:68:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,58:30:58:1.00:2
chr18	29104698	rs2230233	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:55,43:31:98:0.439:2	0/1:33,22:31:55:0.400:2	0/1:5,6:31:11:0.545:2	./.	0/1:0,84:31:84:1.00:2	./.	0/1:86,49:32:135:0.363:2	0/1:87,76:31:163:0.466:2	./.	0/1:65,50:32:115:0.435:2	./.
chr18	29121196	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,4:31:112:0.036:2	./.	./.	./.	./.	./.	./.
chr18	29122618	rs79241126	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,63:31:150:0.420:2	./.	./.	./.	./.
chr18	29122799	rs2278792	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:16,3:32:19:0.158:2	0/1:5,7:32:12:0.583:2	./.	./.	0/1:8,6:31:14:0.429:2	./.	0/1:10,5:31:15:0.333:2	./.	./.	./.	./.
chr18	29125854	rs1042769	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,18:30:40:0.450:2	./.	./.	./.	./.	0/1:24,25:29:50:0.510:2	./.
chr18	29126108	rs142841727	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,53:32:115:0.461:2	./.	./.
chr18	29126592	rs11542379	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,21:29:47:0.447:2	./.	./.	./.
chr18	29126670	rs1791235	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:52,55:32:107:0.514:2	0/1:35,33:33:68:0.485:2	0/1:12,9:32:21:0.429:2	./.	0/1:2,121:31:123:0.984:2	./.	0/1:70,53:32:123:0.431:2	0/1:95,73:32:168:0.435:2	./.	0/1:75,50:32:126:0.400:2	./.
chr18	29172865	rs1800458	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,28:32:65:0.431:2	./.	./.	./.	./.
chr18	29175219	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:33:176:0.023:2	./.	./.
chr18	29205591	rs34683195	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,62:32:129:0.481:2	./.	./.	./.
chr18	29339910	rs3859364	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,121:31:121:1.00:2	0/1:0,86:31:86:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,114:31:114:1.00:2	0/1:0,105:31:105:1.00:2	0/1:0,150:31:150:1.00:2	0/1:0,88:31:88:1.00:2	0/1:0,120:31:120:1.00:2	0/1:0,155:32:155:1.00:2	0/1:0,137:31:137:1.00:2	0/1:0,181:31:183:1.00:2
chr18	29340454	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,8:30:108:0.074:2	./.	./.	./.	./.	./.	./.
chr18	29340479	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,5:30:99:0.051:2	./.	./.	./.	./.	./.	./.
chr18	29340493	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:85,5:30:90:0.056:2	./.	./.	./.	./.	./.	./.
chr18	29340707	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:141,5:30:146:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr18	29432624	rs3737374	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,24:32:46:0.522:2	./.	0/1:27,21:31:48:0.438:2	./.	./.	./.	./.	0/1:35,31:32:66:0.470:2
chr18	29454644	rs2276145	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,26:33:52:0.500:2	./.	./.	./.	./.	./.	./.	0/1:34,26:32:60:0.433:2
chr18	29487565	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,21:33:52:0.404:2
chr18	29488804	rs12326860	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,26:28:81:0.321:2	./.	./.	./.	./.	./.	./.	0/1:54,37:27:92:0.407:2
chr18	29488916	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,4:33:84:0.048:2	./.	./.	./.	./.	./.	./.	./.
chr18	29496282	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,33:33:61:0.541:2	./.
chr18	29497573	rs6506948	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:30:34:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,41:29:41:1.00:2	0/1:0,32:29:32:1.00:2	0/1:0,51:29:51:1.00:2	0/1:0,68:30:68:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,43:30:43:1.00:2
chr18	29625685	rs61749945	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,53:33:133:0.398:2	./.	./.	./.	./.	./.	0/1:64,38:33:102:0.373:2	./.
chr18	29648276	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr18	29693769	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:32:195:0.021:2	./.	./.
chr18	29693804	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:33:171:0.023:2	./.	./.
chr18	29706673	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:32:99:0.040:2	./.	./.
chr18	29706742	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:32:83:0.048:2	./.
chr18	29788107	rs4799640	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:71,60:33:131:0.458:2	0/1:48,37:32:85:0.435:2	./.	0/1:114,55:32:169:0.325:2	./.	./.	./.	./.	0/1:117,58:33:175:0.331:2	0/1:90,69:32:159:0.434:2	./.
chr18	29795076	rs173032	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,38:32:79:0.481:2	0/1:31,27:32:58:0.466:2	0/1:0,15:34:15:1.00:2	0/1:41,48:32:89:0.539:2	0/1:22,11:32:33:0.333:2	0/1:0,70:32:70:1.00:2	0/1:0,31:33:31:1.00:2	0/1:43,32:33:75:0.427:2	0/1:57,61:33:118:0.517:2	0/1:35,27:33:62:0.435:2	0/1:61,55:32:116:0.474:2
chr18	29795101	rs233223	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,46:31:94:0.489:2	0/1:35,30:32:65:0.462:2	0/1:0,13:30:13:1.00:2	0/1:50,51:33:101:0.505:2	0/1:25,21:32:46:0.457:2	0/1:0,85:32:85:1.00:2	0/1:0,43:32:43:1.00:2	0/1:45,39:31:84:0.464:2	0/1:65,69:33:134:0.515:2	0/1:47,32:31:79:0.405:2	0/1:67,58:32:125:0.464:2
chr18	29797750	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:32:181:0.022:2	./.	./.	./.	./.
chr18	29797921	rs616114	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,65:33:114:0.570:2	0/1:40,30:32:70:0.429:2	./.	0/1:65,69:32:134:0.515:2	0/1:46,45:32:91:0.495:2	./.	0/1:41,50:32:91:0.549:2	0/1:61,56:32:117:0.479:2	0/1:70,55:33:125:0.440:2	0/1:60,59:33:119:0.496:2	0/1:81,59:32:140:0.421:2
chr18	29850227	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:32:179:0.022:2
chr18	29850296	rs6506966	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,84:31:176:0.477:2	./.	./.	./.	./.
chr18	29972964	rs3786308	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,24:32:43:0.558:2	./.	./.
chr18	30050356	rs11664566	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:25,8:32:33:0.242:2	0/1:10,12:32:22:0.545:2	./.	./.	./.	./.	./.	./.	./.	0/1:12,20:32:32:0.625:2	./.
chr18	30349691	rs17851892	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,33:32:108:0.306:2	./.	0/1:84,58:32:142:0.408:2	0/1:54,52:33:106:0.491:2	0/1:41,48:33:89:0.539:2	0/1:0,87:32:87:1.00:2
chr18	30795632	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:33:63:0.063:2	./.	./.	./.	./.
chr18	30804756	rs113589354	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,48:32:48:1.00:2
chr18	30804758	rs457896	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,11:31:26:0.423:2	0/1:20,5:28:26:0.200:2	./.	0/1:13,7:29:20:0.350:2	./.
chr18	30825388	rs146565345	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,28:33:49:0.571:2	./.	./.
chr18	30846895	rs9965081	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:32:95:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,96:31:96:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,99:31:99:1.00:2	0/1:39,18:32:57:0.316:2	0/1:0,75:32:75:1.00:2	0/1:0,122:33:122:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,147:32:147:1.00:2
chr18	30847180	rs58448816	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,18:31:38:0.474:2	./.	0/1:23,11:32:34:0.324:2	./.
chr18	30969567	rs76952832	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,73:31:151:0.487:2	./.	./.	./.	./.	./.	./.	./.
chr18	31187641	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:32:72:0.056:2	./.	./.
chr18	31250703	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:35:149:0.027:2	./.	./.
chr18	31320229	rs2282632	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,18:33:28:0.643:2	0/1:11,6:31:17:0.353:2	./.	0/1:25,21:33:46:0.457:2	0/1:0,27:32:27:1.00:2	./.	0/1:14,19:33:33:0.576:2	./.	0/1:22,20:33:42:0.476:2	./.	0/1:32,15:33:47:0.319:2
chr18	31324766	rs17746949	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,16:32:58:0.276:2	./.	./.	./.	./.	./.	./.
chr18	31324934	rs7232237	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,12:30:26:0.462:2	0/1:7,10:29:17:0.588:2	./.	0/1:11,20:30:31:0.645:2	0/1:1,37:29:38:0.974:2	0/1:10,15:30:25:0.600:2	0/1:19,14:30:33:0.424:2	./.	0/1:10,19:30:29:0.655:2	./.	0/1:24,25:29:49:0.510:2
chr18	31325189	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,4:32:30:0.133:2	./.	./.	./.
chr18	31538275	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,39:31:136:0.287:2	./.	./.	./.	./.	./.	./.
chr18	32409070	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,5:30:155:0.032:2	./.	./.	./.	./.	./.
chr18	32418731	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:168,4:32:172:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr18	32438278	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,21:33:34:0.618:2	0/1:13,10:32:23:0.435:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	32558525	rs34534618	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,23:31:48:0.479:2	0/1:29,21:30:50:0.420:2	./.	0/1:22,7:32:29:0.241:2	0/1:50,22:31:72:0.306:2	./.	./.	./.
chr18	32822749	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,4:32:90:0.044:2	./.	./.	./.	./.	./.	./.	./.
chr18	32826088	rs2278463	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:47,40:32:87:0.460:2	0/1:24,24:32:48:0.500:2	./.	./.	./.	./.	0/1:3,57:32:60:0.950:2	./.	./.	0/1:44,40:32:84:0.476:2	0/1:63,63:32:126:0.500:2
chr18	32833713	rs146290259	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,29:33:66:0.439:2	./.	./.
chr18	32834186	rs2249769	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,50:33:109:0.459:2	./.
chr18	32844088	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,27:31:42:0.643:2	./.	./.	./.	./.	./.
chr18	32887914	rs1131709	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:19,20:28:39:0.513:2	0/1:15,5:29:20:0.250:2	./.	./.	./.	./.	0/1:3,36:29:39:0.923:2	0/1:30,28:30:58:0.483:2	0/1:26,14:31:40:0.350:2	0/1:0,39:30:39:1.00:2	0/1:28,22:30:50:0.440:2
chr18	32887933	rs9963614	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,17:32:36:0.472:2	0/1:15,5:30:20:0.250:2	./.	0/1:0,51:32:51:1.00:2	0/1:0,29:32:29:1.00:2	0/1:19,9:32:28:0.321:2	0/1:3,30:32:33:0.909:2	0/1:21,23:32:44:0.523:2	0/1:0,30:33:30:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,39:32:39:1.00:2
chr18	32888090	rs12965288	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:23,15:31:38:0.395:2	0/1:11,10:32:21:0.476:2	0/1:0,4:31:4:1.00:2	./.	./.	./.	0/1:0,13:29:14:1.00:2	0/1:25,20:31:45:0.444:2	0/1:22,11:31:33:0.333:2	0/1:20,12:30:32:0.375:2	0/1:29,9:30:38:0.237:2
chr18	32888397	rs63352060	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,4:19:8:0.500:2	./.	./.	./.	0/1:7,5:20:12:0.417:2	./.	0/1:6,6:23:12:0.500:2
chr18	32888445	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,20:29:34:0.588:2	./.	./.	./.	./.	./.
chr18	32888546	rs34841246	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:24,9:32:33:0.273:2	0/1:14,15:32:29:0.517:2	0/1:0,8:32:8:1.00:2	./.	./.	./.	0/1:0,28:31:28:1.00:2	0/1:37,22:31:59:0.373:2	0/1:25,27:32:52:0.519:2	0/1:27,10:32:37:0.270:2	0/1:29,23:32:52:0.442:2
chr18	32889432	rs12458958	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,11:32:32:0.344:2	0/1:11,12:32:23:0.522:2	0/1:0,3:31:3:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,31:32:31:1.00:2	0/1:21,19:32:40:0.475:2	0/1:0,45:32:45:1.00:2	0/1:21,22:31:43:0.512:2	0/1:0,36:33:36:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,41:32:41:1.00:2
chr18	32917329	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,3:35:59:0.051:2	./.	./.	./.	./.	./.
chr18	32917644	rs2032729	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,9:34:19:0.474:2	0/1:4,4:33:8:0.500:2	./.	0/1:0,14:33:14:1.00:2	0/1:0,9:32:9:1.00:2	0/1:7,4:32:11:0.364:2	0/1:0,9:33:9:1.00:2	0/1:5,6:33:11:0.545:2	0/1:0,15:34:15:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,19:33:19:1.00:2
chr18	33552850	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:31:137:0.029:2	./.	./.	./.
chr18	33552862	rs61731892	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,10:33:13:0.769:2	./.	./.	./.	./.	./.	./.	./.	./.
chr18	33555001	rs143533349	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,11:33:21:0.550:2	./.	./.
chr18	33557466	rs2276314	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,25:32:57:0.439:2	./.	0/1:40,31:33:71:0.437:2	./.	0/1:32,26:33:58:0.448:2	./.	0/1:33,21:33:54:0.389:2
chr18	33647254	rs1789517	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,101:32:101:1.00:2	0/1:0,75:31:75:1.00:2	0/1:14,13:32:27:0.481:2	0/1:1,187:32:188:0.995:2	0/1:2,193:33:195:0.990:2	0/1:0,186:33:186:1.00:2	0/1:118,69:32:187:0.369:2	0/1:0,188:32:188:1.00:2	0/1:0,185:33:185:1.00:2	0/1:0,154:32:154:1.00:2	0/1:0,104:31:104:1.00:2
chr18	33694120	rs1050631	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:75,60:31:135:0.444:2	0/1:40,39:31:79:0.494:2	0/1:5,8:32:13:0.615:2	0/1:68,76:31:144:0.528:2	./.	./.	./.	0/1:89,76:31:165:0.461:2	./.	0/1:47,43:32:90:0.478:2	0/1:85,65:32:150:0.433:2
chr18	33702051	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,4:30:23:0.174:2	./.	./.	./.	./.	./.	./.
chr18	33702162	rs3737466	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,11:30:19:0.579:2	./.	./.	./.	./.	./.	./.	./.	./.
chr18	33706614	rs1789528	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,168:32:168:1.00:2	0/1:0,180:32:180:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,187:32:187:1.00:2	0/1:0,191:33:191:1.00:2	0/1:1,188:32:189:0.995:2	0/1:0,190:33:190:1.00:2	0/1:0,189:33:189:1.00:2	0/1:0,186:33:186:1.00:2	0/1:2,175:32:177:0.989:2	0/1:0,184:31:184:1.00:2
chr18	33713287	rs1785905	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:37,20:32:57:0.351:2	0/1:11,17:32:28:0.607:2	./.	0/1:47,35:31:82:0.427:2	./.	./.	0/1:19,27:32:46:0.587:2	0/1:42,39:32:81:0.481:2	./.	0/1:33,28:32:61:0.459:2	./.
chr18	33718326	rs1785934	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:46,27:31:73:0.370:2	0/1:20,24:32:44:0.545:2	./.	0/1:38,43:33:81:0.531:2	./.	./.	0/1:58,36:31:94:0.383:2	0/1:66,52:32:118:0.441:2	./.	0/1:32,30:32:62:0.484:2	./.
chr18	33725931	rs1785928	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:77,56:32:133:0.421:2	0/1:44,28:32:72:0.389:2	0/1:6,6:31:12:0.500:2	0/1:79,69:31:148:0.466:2	./.	./.	0/1:93,34:31:127:0.268:2	0/1:82,65:31:147:0.442:2	./.	0/1:60,59:32:119:0.496:2	./.
chr18	33726259	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:33:157:0.025:2
chr18	33739790	rs17563617	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,22:32:59:0.373:2	./.	./.	./.	./.
chr18	33744450	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:30:78:0.051:2	./.	./.	./.	./.	./.
chr18	33750046	rs8299	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,59:31:132:0.447:2	0/1:38,35:31:73:0.479:2	0/1:21,10:31:31:0.323:2	0/1:98,80:31:178:0.449:2	./.	./.	0/1:109,85:31:194:0.438:2	0/1:114,81:31:195:0.415:2	./.	0/1:80,65:32:145:0.448:2	./.
chr18	33779705	rs3744900	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,38:31:71:0.535:2	0/1:33,51:30:84:0.607:2	./.	./.	./.	./.	0/1:26,22:31:48:0.458:2
chr18	33779732	rs368226264	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,22:30:78:0.282:2	./.	./.
chr18	33779745	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:34:87:0.046:2	./.	./.
chr18	33779821	rs646424	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:32:55:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,82:31:82:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,110:31:110:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,107:33:107:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,98:32:98:1.00:2
chr18	33779855	rs623053	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:30:67:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,82:30:82:1.00:2	0/1:63,35:31:98:0.357:2	0/1:56,45:30:101:0.446:2	0/1:1,88:31:89:0.989:2	0/1:1,106:30:107:0.991:2	0/1:0,95:31:95:1.00:2	0/1:0,53:31:53:1.00:2	0/1:48,54:30:102:0.529:2
chr18	33779896	rs540967	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:32:74:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,79:31:80:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,73:31:73:1.00:2	0/1:0,63:33:63:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,90:32:90:1.00:2
chr18	33780020	rs623558	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,128:30:128:1.00:2	0/1:0,75:29:75:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,186:29:188:1.00:2	0/1:1,125:29:126:0.992:2	./.	0/1:0,180:30:180:1.00:2	0/1:0,187:29:188:1.00:2	0/1:0,162:30:162:1.00:2	0/1:0,129:29:129:1.00:2	0/1:0,163:29:163:1.00:2
chr18	33785093	rs678560	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:33:51:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,63:32:63:1.00:2	0/1:51,29:31:80:0.363:2	0/1:40,34:31:74:0.459:2	0/1:0,69:32:69:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,87:33:87:1.00:2	0/1:0,74:32:74:1.00:2	0/1:58,46:31:104:0.442:2
chr18	33785185	rs667667	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:30:40:1.00:2	0/1:0,26:29:26:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,46:29:46:1.00:2	0/1:0,59:29:59:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,49:29:49:1.00:2	0/1:0,90:30:90:1.00:2
chr18	33795608	rs35980997	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,33:32:76:0.434:2	./.	./.	./.	./.
chr18	33831189	rs594445	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:22,11:31:33:0.333:2	0/1:2,14:32:16:0.875:2	./.	./.	./.	./.	0/1:13,9:31:22:0.409:2	0/1:17,8:30:25:0.320:2	0/1:21,13:32:34:0.382:2	0/1:0,20:31:20:1.00:2	./.
chr18	33848581	rs1057251	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,72:30:124:0.581:2	./.	./.
chr18	34205551	rs60414347	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,9:31:24:0.375:2
chr18	34273279	rs61735993	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:35,30:32:65:0.462:2	0/1:19,20:30:39:0.513:2	0/1:5,6:33:11:0.545:2	./.	./.	./.	./.	0/1:49,64:32:113:0.566:2	./.	0/1:34,41:31:75:0.547:2	./.
chr18	34289285	rs61735998	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,29:31:73:0.397:2	./.	./.	./.	./.	./.	./.
chr18	34310668	rs3744903	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:26,18:32:44:0.409:2	0/1:14,9:31:23:0.391:2	./.	./.	0/1:20,6:30:26:0.231:2	./.	0/1:26,17:31:43:0.395:2	./.	0/1:0,55:32:55:1.00:2	0/1:38,23:32:61:0.377:2	./.
chr18	34320763	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:32:95:0.042:2	./.	./.	./.
chr18	34324091	rs2303510	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:28,20:31:48:0.417:2	0/1:13,13:30:26:0.500:2	./.	./.	0/1:32,26:31:58:0.448:2	./.	0/1:29,40:32:69:0.580:2	./.	0/1:0,66:32:66:1.00:2	0/1:24,22:32:46:0.478:2	./.
chr18	34398914	rs1045781	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:40,22:32:62:0.355:2	0/1:21,14:32:35:0.400:2	0/1:1,5:32:6:0.833:2	./.	./.	./.	0/1:25,33:32:58:0.569:2	./.	0/1:0,73:33:73:1.00:2	./.	0/1:39,51:33:91:0.567:2
chr18	34415205	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:31:65:0.062:2	./.	./.	./.	./.
chr18	34415233	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:31:103:0.039:2	0/1:143,6:31:149:0.040:2	./.	./.	./.
chr18	34415278	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,5:27:159:0.031:2	./.	./.	./.
chr18	34415306	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:32:125:0.032:2	./.	./.	./.
chr18	34465554	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:32:106:0.038:2	./.	./.	./.	./.
chr18	34465598	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:32:179:0.022:2	./.	./.	./.	./.
chr18	34647176	rs3747895	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,77:32:149:0.517:2	./.	./.	./.	0/1:92,76:31:168:0.452:2	./.	0/1:56,50:31:106:0.472:2	./.
chr18	34647323	rs3747896	T	A,G	.	PASS	AC=2,3;AF=0.133,0.200;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9-variant10-variant11	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0/2:33:128:0.508:2	0/2:31:74:0.419:2	0/2:32:19:0.474:2	0/1:32:145:0.424:2	./.	./.	./.	0/1:32:170:0.453:2	./.	./.	./.
chr18	34740290	rs140424487	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,55:33:99:0.556:2
chr18	34844668	rs78311159	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,23:30:37:0.622:2	./.	./.	./.	./.	./.
chr18	34850846	rs1443638	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,16:32:26:0.615:2	./.	0/1:11,13:32:24:0.542:2	./.	0/1:0,42:32:42:1.00:2	./.	./.	0/1:7,18:32:25:0.720:2
chr18	39584412	rs34205132	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,52:31:97:0.536:2	./.	./.	./.	./.
chr18	39584483	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:32:123:0.033:2	./.	./.	./.	./.	./.
chr18	39618814	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:33:183:0.022:2	./.	./.
chr18	39638010	rs117351748	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,27:31:54:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr18	40323497	rs1804730	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,26:31:61:0.426:2	0/1:21,24:30:45:0.533:2	0/1:37,19:30:56:0.339:2	./.	0/1:19,25:31:44:0.568:2	0/1:28,25:32:53:0.472:2	0/1:22,19:31:41:0.463:2	0/1:34,26:30:60:0.433:2
chr18	40554120	rs16977171	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:33:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr18	40613840	rs12954451	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,13:33:13:1.00:2	0/1:0,16:32:16:1.00:2	./.	0/1:10,8:32:18:0.444:2	0/1:12,7:32:19:0.368:2	./.	0/1:3,5:35:8:0.625:2	0/1:0,21:32:21:1.00:2	0/1:0,14:34:14:1.00:2	0/1:0,12:32:12:1.00:2	0/1:2,16:32:18:0.889:2
chr18	42456653	rs663651	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,8:30:8:1.00:2	0/1:72,35:32:107:0.327:2	0/1:0,46:31:46:1.00:2	0/1:55,53:32:108:0.491:2	0/1:50,48:31:98:0.490:2	./.	./.	0/1:53,49:32:103:0.480:2	./.
chr18	42529996	rs11082414	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,18:31:29:0.621:2	0/1:7,3:32:10:0.300:2	./.	0/1:23,12:32:35:0.343:2	0/1:8,15:33:23:0.652:2	0/1:20,15:33:35:0.429:2	./.	./.	0/1:18,19:34:37:0.514:2	0/1:9,10:33:19:0.526:2	./.
chr18	42532606	rs3744825	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,6:31:19:0.316:2	./.	0/1:70,56:31:126:0.444:2	./.	./.	./.	./.	0/1:44,49:33:94:0.527:2	./.
chr18	42532693	rs1064204	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,72:31:135:0.533:2	0/1:60,49:30:109:0.450:2	./.	./.	./.
chr18	42533130	rs8096662	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,19:28:49:0.388:2	0/1:6,12:30:18:0.667:2	0/1:0,9:29:9:1.00:2	0/1:0,46:29:46:1.00:2	0/1:0,64:29:64:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,75:28:76:1.00:2	0/1:0,66:29:66:1.00:2	0/1:0,48:29:48:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,41:30:41:1.00:2
chr18	42618578	rs77518617	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,46:32:125:0.368:2	./.	./.	./.
chr18	43204739	rs34461862	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,16:29:27:0.593:2	./.	./.	0/1:21,11:31:32:0.344:2	0/1:18,16:31:34:0.471:2	./.
chr18	43206985	rs1484873	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:29:76:1.00:2	0/1:0,51:29:51:1.00:2	0/1:0,8:28:8:1.00:2	0/1:0,101:30:101:1.00:2	0/1:0,98:29:98:1.00:2	0/1:0,100:29:100:1.00:2	0/1:0,102:29:102:1.00:2	0/1:0,85:29:85:1.00:2	0/1:1,106:30:107:0.991:2	0/1:1,103:29:104:0.990:2	0/1:0,84:29:84:1.00:2
chr18	43243802	rs143263878	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,33:33:65:0.508:2
chr18	43246156	rs9960464	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:32:53:1.00:2	0/1:0,26:32:26:1.00:2	0/1:3,6:32:9:0.667:2	0/1:63,25:30:88:0.284:2	0/1:44,25:32:69:0.362:2	./.	0/1:63,27:32:90:0.300:2	0/1:80,50:32:130:0.385:2	0/1:50,27:32:77:0.351:2	./.	./.
chr18	43247001	rs2156609	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,21:33:21:1.00:2	0/1:6,7:33:13:0.538:2	0/1:2,39:32:41:0.951:2	0/1:2,51:31:53:0.962:2	0/1:30,34:32:64:0.531:2	0/1:1,44:32:45:0.978:2	0/1:0,67:32:67:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,47:32:47:1.00:2	./.
chr18	43252883	rs1123617	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,12:31:18:0.667:2	./.	./.	./.	./.	./.	./.	./.	0/1:64,63:32:127:0.496:2
chr18	43262359	rs3745009	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,82:31:138:0.594:2	0/1:40,38:31:79:0.487:2	0/1:8,10:30:18:0.556:2	0/1:80,58:30:138:0.420:2	0/1:0,92:29:92:1.00:2	0/1:82,46:30:129:0.359:2	./.	0/1:71,70:30:142:0.496:2	0/1:62,54:31:116:0.466:2	0/1:46,58:29:104:0.558:2	./.
chr18	43307246	rs11877062	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,93:31:95:0.979:2	0/1:0,47:31:47:1.00:2	0/1:6,4:31:10:0.400:2	0/1:93,50:32:143:0.350:2	0/1:107,60:31:167:0.359:2	0/1:1,166:31:167:0.994:2	0/1:2,128:31:130:0.985:2	./.	0/1:2,161:32:163:0.988:2	0/1:76,76:32:152:0.500:2	0/1:0,97:31:97:1.00:2
chr18	43307338	rs11877086	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,64:31:64:1.00:2	0/1:0,29:31:29:1.00:2	./.	0/1:53,38:31:91:0.418:2	0/1:46,47:30:93:0.505:2	0/1:1,73:31:74:0.986:2	0/1:2,73:31:76:0.973:2	./.	0/1:0,65:31:65:1.00:2	0/1:39,24:31:63:0.381:2	./.
chr18	43310415	rs2298720	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,22:31:47:0.468:2	0/1:20,10:30:30:0.333:2	./.	./.	./.	./.	./.	./.
chr18	43316538	rs2298718	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,128:29:128:1.00:2	0/1:0,97:29:97:1.00:2	0/1:14,9:29:23:0.391:2	0/1:0,146:30:146:1.00:2	0/1:0,125:28:125:1.00:2	0/1:0,122:29:123:1.00:2	0/1:1,123:29:124:0.992:2	./.	0/1:4,145:30:149:0.973:2	0/1:48,56:29:104:0.538:2	0/1:0,126:29:126:1.00:2
chr18	43319519	rs1058396	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,78:32:79:0.987:2	0/1:0,39:32:39:1.00:2	0/1:4,7:30:11:0.636:2	0/1:68,37:32:105:0.352:2	0/1:41,39:30:80:0.488:2	0/1:55,45:31:100:0.450:2	0/1:0,79:31:79:1.00:2	./.	0/1:1,92:32:93:0.989:2	0/1:41,29:32:70:0.414:2	0/1:1,61:32:62:0.984:2
chr18	43328399	rs188063122	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,8:31:21:0.381:2	./.	./.	./.	./.	./.	./.	./.	./.
chr18	43329841	rs28898897	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,42:33:90:0.472:2	./.	./.
chr18	43329894	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:30:74:0.054:2	./.
chr18	43416974	rs9950673	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,17:31:43:0.395:2	./.	0/1:12,16:30:28:0.571:2	./.	0/1:32,15:31:47:0.319:2	0/1:21,18:32:39:0.462:2	./.	./.
chr18	43419003	rs2919643	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.
chr18	43420177	rs61104666	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,34:31:72:0.472:2	./.	0/1:41,23:30:64:0.359:2	./.	0/1:41,42:31:83:0.506:2	0/1:31,23:30:54:0.426:2	./.	./.
chr18	43469787	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:33:114:0.035:2	./.	./.
chr18	43481075	rs1893523	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:29:5:0.600:2	0/1:16,18:30:34:0.529:2	0/1:23,17:30:40:0.425:2	0/1:15,9:30:24:0.375:2	./.	0/1:17,12:30:29:0.414:2	0/1:13,26:32:39:0.667:2	./.	./.
chr18	43481106	rs370776793	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,13:31:20:0.650:2	./.	./.	./.	./.
chr18	43490602	rs3744996	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,5:30:12:0.417:2	0/1:21,23:31:44:0.523:2	0/1:31,11:31:42:0.262:2	0/1:20,22:30:42:0.524:2	./.	0/1:21,24:31:45:0.533:2	0/1:21,27:32:48:0.563:2	./.	./.
chr18	43496539	rs78339727	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,33:31:54:0.623:2
chr18	43497710	rs3744998	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,8:32:12:0.667:2	0/1:66,68:33:135:0.507:2	./.	./.	0/1:1,93:32:94:0.989:2	./.	0/1:81,51:33:132:0.386:2	0/1:60,63:32:123:0.512:2	0/1:93,84:33:178:0.475:2
chr18	43508856	rs3744999	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,20:32:34:0.588:2	0/1:15,8:32:23:0.348:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,25:33:35:0.714:2
chr18	43531186	rs117817123	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,22:31:49:0.458:2	./.	./.	./.
chr18	43532546	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:32:160:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	43534824	rs59422275	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:38,36:31:74:0.486:2	0/1:24,20:29:44:0.455:2	./.	./.	./.	./.	./.	0/1:48,44:30:92:0.478:2	./.	./.	./.
chr18	43565380	rs57589400	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:30:8:1.00:2	./.	./.	./.	./.	./.	0/1:32,26:30:58:0.448:2	./.	./.
chr18	43565399	rs58786055	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.	./.	./.	./.	./.	0/1:40,24:33:64:0.375:2	./.	./.
chr18	43568717	rs2276199	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,8:29:9:0.889:2	./.	./.	./.	0/1:56,4:30:60:0.067:2	./.	0/1:66,47:29:113:0.416:2	./.	./.
chr18	43595852	rs201994690	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,12:31:17:0.706:2	./.	./.
chr18	43668131	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:31:110:0.037:2
chr18	43668139	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:30:104:0.038:2
chr18	43668141	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:31:104:0.038:2
chr18	43685198	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:32:199:0.020:2	./.	./.	./.
chr18	43698254	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,4:30:43:0.093:2	./.	./.	./.	./.	./.	./.
chr18	44015315	rs139779598	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,26:33:46:0.565:2	0/1:11,11:33:22:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	44057494	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:25:46:0.087:2	./.	./.	./.	./.	./.
chr18	44057673	rs74316327	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,5:30:14:0.357:2	./.	./.	./.	./.	./.	./.	0/1:47,24:30:71:0.338:2	0/1:39,44:31:83:0.530:2
chr18	44063598	rs1377016	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,14:30:30:0.467:2	./.	./.	./.	./.	./.	./.	0/1:97,84:31:181:0.464:2	0/1:84,83:31:167:0.497:2
chr18	44104437	rs12606417	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,38:31:66:0.576:2	0/1:46,25:30:71:0.352:2
chr18	44109144	rs187587197	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,83:32:196:0.423:2	./.	./.
chr18	44126909	rs1893566	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,26:32:58:0.448:2	0/1:27,7:31:34:0.206:2	0/1:0,9:32:9:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,88:30:89:1.00:2	0/1:53,34:31:87:0.391:2	0/1:1,110:31:111:0.991:2	0/1:0,79:30:79:1.00:2	0/1:36,25:31:61:0.410:2	0/1:0,41:31:41:1.00:2	0/1:0,58:31:58:1.00:2
chr18	44135143	rs11665444	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:30:4:1.00:2	0/1:67,60:30:127:0.472:2	0/1:60,52:30:112:0.464:2	0/1:62,54:29:116:0.466:2	0/1:86,38:29:124:0.306:2	0/1:80,57:29:137:0.416:2	0/1:0,139:30:139:1.00:2	0/1:0,118:29:118:1.00:2	0/1:0,151:29:151:1.00:2
chr18	44137400	rs118174674	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,88:32:196:0.449:2	./.	./.	./.	./.
chr18	44143153	rs36086089	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,13:28:25:0.520:2	./.	./.	./.	0/1:28,15:30:43:0.349:2	./.	./.	./.
chr18	44149474	rs2086005	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,52:30:128:0.406:2
chr18	44152060	rs370779024	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,62:32:164:0.378:2	./.	./.	./.	./.	./.
chr18	44157746	rs35088381	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,42:32:70:0.600:2	./.	./.	./.	./.	./.	./.	./.
chr18	44157764	rs34589386	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,32:30:59:0.542:2	./.	./.	./.	./.	./.	./.	./.
chr18	44171979	rs187658135	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,110:31:194:0.567:2	./.	./.	./.	./.	./.	./.	./.
chr18	44181227	rs10163657	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,25:32:46:0.543:2
chr18	44181251	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,4:31:74:0.054:2	./.	./.	./.	./.	./.	./.
chr18	44219748	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,51:32:107:0.477:2	./.	./.
chr18	44236995	rs36024592	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,70:32:188:0.372:2	0/1:103,62:31:165:0.376:2	./.	./.	./.	./.	./.	./.
chr18	44260451	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:31:56:0.071:2	./.	./.
chr18	44416399	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:33:111:0.036:2	./.	./.	./.
chr18	44497345	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,4:32:18:0.222:2	./.	./.	./.	./.	./.
chr18	44542770	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,9:31:132:0.068:2	./.	./.
chr18	44542823	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,8:31:99:0.081:2	./.	./.	./.
chr18	44542964	rs202194075	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,8:33:63:0.127:2	0/1:114,6:33:120:0.050:2	./.	./.	./.	./.	./.	./.
chr18	44543085	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:132,31:30:163:0.190:2	0/1:90,9:32:99:0.091:2	0/1:11,6:32:17:0.353:2	./.	./.	./.	./.	0/1:82,81:30:163:0.497:2	./.	./.	./.
chr18	44543390	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,7:31:92:0.076:2	./.	./.	./.
chr18	44544105	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:31:114:0.036:2
chr18	44544257	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,11:31:197:0.056:2	./.	./.
chr18	44548697	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,8:32:141:0.057:2	./.	./.
chr18	44548750	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,8:30:94:0.085:2	./.	./.	./.
chr18	44548891	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,14:33:105:0.133:2	./.	./.	./.	./.	./.	./.	0/1:150,5:32:155:0.032:2
chr18	44549012	rs201366170	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:127,37:31:164:0.226:2	0/1:85,26:31:111:0.234:2	./.	./.	./.	./.	./.	0/1:85,77:30:162:0.475:2	./.	./.	./.
chr18	44549095	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:177,6:29:183:0.033:2	./.	./.	./.	./.	./.	./.
chr18	44549194	rs75431623	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,11:32:106:0.104:2	./.	./.
chr18	44549232	rs200094578	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:106,7:31:113:0.062:2	./.	./.	./.	./.	./.	./.
chr18	44549252	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,5:32:93:0.054:2	./.	./.	./.	./.
chr18	44549397	rs200712716	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:34:11:0.364:2	./.	./.	./.	./.	./.	./.	./.
chr18	44549606	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,9:30:34:0.273:2	./.	./.	./.	./.	./.	./.
chr18	44550032	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:137,6:31:143:0.042:2	0/1:171,19:31:190:0.100:2	./.	./.	./.	./.	./.
chr18	44550110	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,8:31:164:0.049:2	./.	./.
chr18	44550178	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:35:194:0.021:2	./.	./.	./.	./.
chr18	44550184	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:29:196:0.026:2	./.	0/1:185,9:31:194:0.046:2	./.	./.
chr18	44554612	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,6:29:79:0.078:2	./.	./.
chr18	44554806	rs200799485	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,12:33:92:0.130:2	0/1:109,5:31:114:0.044:2	./.	./.	./.	./.	./.	./.
chr18	44554927	rs149635425	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:120,49:30:169:0.290:2	0/1:70,22:31:92:0.239:2	0/1:7,5:31:12:0.417:2	./.	./.	./.	./.	0/1:78,83:29:161:0.516:2	./.	./.	./.
chr18	44555010	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:185,9:23:194:0.046:2	./.	./.	./.	./.	./.	./.
chr18	44555051	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,14:31:170:0.082:2
chr18	44555147	rs139717358	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,14:31:114:0.123:2	0/1:86,19:31:105:0.181:2	./.	./.	./.	./.	./.	./.
chr18	44555312	rs76539063	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:113,72:33:186:0.389:2	0/1:121,78:33:199:0.392:2	0/1:11,3:33:14:0.214:2	0/1:35,3:32:38:0.079:2	0/1:19,3:33:22:0.136:2	./.	./.	0/1:25,163:33:188:0.867:2
chr18	44555521	rs146319528	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,5:31:28:0.179:2	./.	./.	./.	./.	./.	./.	./.
chr18	44555947	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,12:31:181:0.066:2	./.	./.	./.	./.	0/1:126,6:32:132:0.045:2
chr18	44556099	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,8:30:195:0.041:2	./.	./.
chr18	44559394	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:51,4:32:55:0.073:2	0/1:26,9:31:35:0.257:2	./.	./.	0/1:46,4:30:50:0.080:2	0/1:50,17:32:67:0.254:2	0/1:48,11:27:59:0.186:2	0/1:57,17:31:74:0.230:2	0/1:63,11:32:74:0.149:2	0/1:66,16:30:82:0.195:2	0/1:71,6:31:77:0.078:2
chr18	44559452	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,4:28:43:0.093:2	0/1:38,4:28:42:0.095:2	./.	0/1:54,7:30:61:0.115:2	./.	0/1:47,6:29:53:0.113:2	./.
chr18	44559462	.	G	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,4:30:39:0.103:2	./.	./.	0/1:47,7:31:54:0.130:2	./.	0/1:34,6:30:40:0.150:2	./.
chr18	44560300	rs3744863	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,10:30:24:0.417:2	0/1:14,21:30:35:0.600:2	./.	./.	0/1:28,5:29:33:0.152:2	0/1:0,32:29:32:1.00:2	0/1:2,31:29:33:0.939:2	0/1:15,8:27:23:0.348:2	0/1:0,46:30:46:1.00:2	0/1:0,16:30:16:1.00:2	0/1:28,14:30:42:0.333:2
chr18	44560429	rs892586	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,130:30:130:1.00:2	0/1:1,74:31:75:0.987:2	0/1:0,13:32:13:1.00:2	./.	0/1:80,35:30:115:0.304:2	0/1:0,146:30:146:1.00:2	0/1:2,88:31:90:0.978:2	0/1:2,119:30:121:0.983:2	0/1:1,139:32:140:0.993:2	0/1:1,122:31:123:0.992:2	0/1:105,85:32:190:0.447:2
chr18	44560814	rs148989408	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,13:32:40:0.325:2	./.	./.	./.	./.
chr18	44560875	rs2010834	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,20:31:37:0.541:2	0/1:16,8:27:24:0.333:2	./.	./.	0/1:27,23:31:50:0.460:2	0/1:1,72:30:73:0.986:2	0/1:0,46:31:46:1.00:2	0/1:48,36:31:84:0.429:2	0/1:0,49:33:49:1.00:2	0/1:0,52:30:52:1.00:2	0/1:50,30:31:80:0.375:2
chr18	44561100	rs2571028	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:26:7:1.00:2	./.	./.	./.	./.	0/1:0,12:27:12:1.00:2	0/1:0,7:26:7:1.00:2	0/1:0,5:25:5:1.00:2	0/1:0,8:28:8:1.00:2	0/1:0,4:28:4:1.00:2	./.
chr18	44561375	rs369869067	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,3:30:28:0.107:2	./.
chr18	44561379	rs200315582	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,3:32:29:0.103:2	./.
chr18	44561386	rs199546236	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,4:31:56:0.071:2	./.	./.	./.	./.	0/1:26,4:29:30:0.133:2	./.
chr18	44561516	rs2571027	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:40,29:28:69:0.420:2	0/1:27,10:28:37:0.270:2	./.	./.	0/1:53,25:26:78:0.321:2	0/1:0,45:27:45:1.00:2	0/1:2,34:29:36:0.944:2	0/1:63,18:29:81:0.222:2	0/1:0,46:28:46:1.00:2	0/1:0,33:28:33:1.00:2	0/1:91,28:27:119:0.235:2
chr18	44561601	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,5:33:76:0.066:2	./.
chr18	44561619	rs61738602	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:38,31:33:69:0.449:2	0/1:11,16:32:27:0.593:2	0/1:3,4:32:7:0.571:2	./.	./.	./.	./.	0/1:35,46:32:81:0.568:2	./.	./.	./.
chr18	44561630	rs61746775	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:29,25:32:54:0.463:2	0/1:9,17:31:26:0.654:2	./.	./.	./.	./.	./.	0/1:31,40:32:71:0.563:2	./.	./.	./.
chr18	44561795	rs2571026	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:26,33:28:59:0.559:2	0/1:10,19:29:29:0.655:2	0/1:3,6:28:9:0.667:2	./.	0/1:43,56:29:99:0.566:2	0/1:0,51:29:51:1.00:2	0/1:0,77:29:77:1.00:2	0/1:36,40:29:76:0.526:2	0/1:0,64:29:64:1.00:2	0/1:3,66:29:69:0.957:2	0/1:26,38:28:64:0.594:2
chr18	44585955	rs7233515	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,12:32:26:0.462:2	0/1:4,4:32:8:0.500:2	./.	./.	0/1:0,12:29:12:1.00:2	0/1:0,20:31:20:1.00:2	0/1:1,29:31:30:0.967:2	./.	0/1:0,32:32:32:1.00:2	0/1:17,19:31:36:0.528:2	0/1:20,18:31:38:0.474:2
chr18	44595647	rs56297904	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,48:32:106:0.453:2	./.
chr18	44626630	rs2289130	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,60:29:61:0.984:2	./.	./.	./.
chr18	44635103	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:30:78:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	45555829	rs7231151	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,13:27:24:0.542:2	./.	./.	./.	./.	0/1:0,13:30:13:1.00:2	0/1:0,6:31:6:1.00:2	0/1:5,6:26:11:0.545:2
chr18	45566276	rs80109066	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,23:28:33:0.697:2	./.	./.	0/1:9,13:29:22:0.591:2	./.
chr18	45566996	rs201261592	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,86:30:168:0.512:2	./.
chr18	46284587	rs1038308	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,19:26:44:0.432:2	0/1:14,6:27:20:0.300:2	0/1:4,5:28:9:0.556:2	0/1:1,46:27:47:0.979:2	0/1:0,53:25:53:1.00:2	0/1:0,52:26:52:1.00:2	0/1:0,47:24:47:1.00:2	0/1:0,53:25:53:1.00:2	0/1:0,52:28:52:1.00:2	./.	0/1:0,26:25:26:1.00:2
chr18	46343666	rs3764481	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,84:31:157:0.535:2	0/1:80,61:31:141:0.433:2	./.	./.	./.	0/1:0,102:31:102:1.00:2	./.	./.
chr18	46384025	rs181150148	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,63:31:138:0.460:2	./.	./.	./.	./.
chr18	46447801	rs200991750	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,3:33:43:0.070:2	./.	./.	0/1:39,8:21:47:0.170:2	./.	0/1:21,4:24:25:0.160:2	./.
chr18	46474746	rs3736242	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:41,24:30:65:0.369:2	0/1:26,18:32:44:0.409:2	./.	./.	0/1:45,19:30:64:0.297:2	./.	0/1:24,12:31:36:0.333:2	./.	./.	./.	./.
chr18	46812834	rs201540129	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:30:110:0.036:2	./.	./.	./.	./.
chr18	46917980	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:31:113:0.035:2	./.	./.	./.
chr18	47013723	rs6417105	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:30:12:0.583:2	0/1:6,10:29:16:0.625:2	0/1:6,11:30:17:0.647:2	0/1:0,7:30:7:1.00:2	0/1:0,12:30:12:1.00:2	./.	./.	./.
chr18	47013777	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,23:31:46:0.500:2	0/1:19,18:31:38:0.486:2	./.	./.	./.	./.
chr18	47017820	rs1943676	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,10:33:16:0.625:2	0/1:55,42:32:97:0.433:2	0/1:31,29:31:60:0.483:2	0/1:47,41:31:88:0.466:2	0/1:1,56:32:57:0.982:2	0/1:2,103:33:105:0.981:2	0/1:47,60:33:107:0.561:2	./.	0/1:52,71:33:123:0.577:2
chr18	47093864	rs2000813	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,24:31:48:0.500:2	./.	./.	0/1:33,33:30:66:0.500:2	./.	0/1:35,36:31:71:0.507:2	0/1:37,18:31:55:0.327:2	0/1:22,27:31:49:0.551:2
chr18	47310224	rs147585440	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,80:31:193:0.415:2	0/1:103,89:31:192:0.464:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	47311681	rs377136498	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:32:94:0.043:2	./.	./.	./.	./.
chr18	47313722	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:32:36:0.111:2	./.	./.	./.
chr18	47313733	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:33:38:0.105:2	./.	./.	./.
chr18	47318626	rs11549285	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,58:31:101:0.574:2	./.	./.	./.	./.	./.	./.
chr18	47329078	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,4:30:92:0.043:2	./.	./.	./.	./.	./.	./.
chr18	47339798	rs2945506	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,7:28:7:1.00:2	0/1:0,8:31:8:1.00:2	./.	0/1:0,7:28:7:1.00:2	./.	0/1:0,10:30:10:1.00:2	./.	./.	./.	0/1:0,8:31:8:1.00:2	0/1:0,4:31:4:1.00:2
chr18	47339822	rs79060184	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,4:28:9:0.444:2	./.	./.
chr18	47352977	rs201080553	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,5:32:70:0.071:2	./.	./.	./.	./.	./.	./.
chr18	47363917	rs138128932	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:148,9:29:157:0.057:2	0/1:97,10:29:107:0.093:2	./.	0/1:163,21:29:184:0.114:2	0/1:160,28:30:188:0.149:2	0/1:161,18:31:179:0.101:2	0/1:164,20:31:184:0.109:2	0/1:171,18:31:189:0.095:2	0/1:147,23:30:170:0.135:2	0/1:152,25:32:177:0.141:2	0/1:142,17:28:160:0.107:2
chr18	47363930	rs373021577	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:153,11:30:164:0.067:2	0/1:100,18:32:118:0.153:2	0/1:21,3:31:24:0.125:2	0/1:162,23:33:185:0.124:2	0/1:158,32:31:191:0.168:2	0/1:157,23:31:180:0.128:2	0/1:157,21:33:179:0.118:2	0/1:162,22:32:184:0.120:2	0/1:143,18:33:161:0.112:2	0/1:153,30:32:183:0.164:2	0/1:144,25:32:169:0.148:2
chr18	47363931	rs77840018	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:157,10:29:167:0.060:2	0/1:108,11:30:119:0.092:2	./.	0/1:167,21:32:188:0.112:2	0/1:159,32:31:191:0.168:2	0/1:163,20:31:183:0.109:2	0/1:157,21:31:178:0.118:2	0/1:166,18:32:184:0.098:2	0/1:142,17:32:159:0.107:2	0/1:158,25:32:183:0.137:2	0/1:149,21:30:170:0.124:2
chr18	47363939	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:128,9:32:137:0.066:2	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	0/1:176,6:32:182:0.033:2	./.
chr18	47363940	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,9:32:138:0.065:2	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	0/1:176,6:32:182:0.033:2	./.
chr18	47363963	rs112417235	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:149,46:30:195:0.236:2	./.	./.	./.	0/1:108,54:31:162:0.333:2	./.	./.
chr18	47363987	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:168,6:31:174:0.034:2	./.	0/1:171,7:31:178:0.039:2	./.	./.	./.	0/1:183,6:30:189:0.032:2	./.	./.	./.
chr18	47364009	rs149010847	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:129,15:31:144:0.104:2	0/1:130,28:30:159:0.177:2	0/1:28,4:30:32:0.125:2	0/1:153,27:31:180:0.150:2	0/1:144,30:30:174:0.172:2	0/1:121,30:31:151:0.199:2	0/1:141,37:30:178:0.208:2	0/1:143,43:31:186:0.231:2	0/1:106,22:31:128:0.172:2	0/1:113,17:30:130:0.131:2	0/1:124,36:31:160:0.225:2
chr18	47375932	rs488890	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,115:29:116:0.991:2	0/1:0,80:29:80:1.00:2	0/1:0,18:29:18:1.00:2	0/1:2,149:30:151:0.987:2	./.	0/1:2,128:29:130:0.985:2	0/1:91,60:29:151:0.397:2	0/1:91,100:29:191:0.524:2	./.	0/1:0,140:30:140:1.00:2	0/1:2,130:29:132:0.985:2
chr18	47398549	rs3826579	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,42:30:101:0.416:2	./.	./.	./.	0/1:70,67:31:137:0.489:2	./.	./.
chr18	47429022	rs2298624	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,39:31:88:0.443:2	./.	./.	./.	0/1:29,26:32:55:0.473:2	./.	./.
chr18	47438518	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,4:33:39:0.103:2	./.	./.	./.	./.	./.	0/1:108,4:34:112:0.036:2	./.	./.	./.
chr18	47455923	rs2298628	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,13:29:13:1.00:2	0/1:0,9:28:9:1.00:2	0/1:0,2:32:2:1.00:2	0/1:11,25:26:37:0.694:2	0/1:19,13:27:32:0.406:2	0/1:0,44:28:44:1.00:2	0/1:32,21:28:53:0.396:2	0/1:13,30:28:43:0.698:2	./.	0/1:0,22:29:22:1.00:2	0/1:0,39:28:39:1.00:2
chr18	47488693	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:34:196:0.020:2
chr18	47500836	rs11082795	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,10:30:20:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr18	47511113	rs17659179	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,36:28:72:0.500:2	0/1:24,18:29:42:0.429:2	./.	./.	./.	./.	./.	./.	0/1:92,57:29:149:0.383:2	./.	./.
chr18	47563299	rs1815930	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,117:33:117:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,171:33:171:1.00:2	0/1:0,148:32:148:1.00:2	0/1:0,154:33:154:1.00:2	0/1:0,100:32:100:1.00:2	0/1:1,136:33:137:0.993:2	0/1:0,167:34:167:1.00:2	0/1:0,102:33:102:1.00:2	0/1:0,131:33:131:1.00:2
chr18	47566647	rs78626055	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,59:30:158:0.373:2	./.
chr18	47581729	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,4:32:54:0.074:2	./.	./.	./.	./.	./.	./.	./.
chr18	47777244	rs35193847	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:110,80:33:190:0.421:2	0/1:100,95:32:195:0.487:2	./.	0/1:111,82:32:193:0.425:2	./.	0/1:2,181:31:183:0.989:2	0/1:106,79:32:185:0.427:2	./.	./.	0/1:96,99:32:195:0.508:2	./.
chr18	47778056	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:34:182:0.022:2	./.	./.
chr18	47800179	rs125555	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,24:28:52:0.462:2	./.	./.
chr18	47803354	rs140686	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,41:32:94:0.441:2	./.
chr18	47809871	rs12458654	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,48:30:99:0.485:2	0/1:20,23:31:43:0.535:2	0/1:0,20:30:20:1.00:2	0/1:60,60:30:120:0.500:2	./.	0/1:0,88:30:88:1.00:2	0/1:78,55:30:133:0.414:2	0/1:57,76:30:133:0.571:2	./.	0/1:51,44:30:95:0.463:2	./.
chr18	47809894	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:146,4:33:150:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr18	47810334	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,4:28:86:0.047:2	./.	./.	./.	./.	./.	./.
chr18	47810351	rs7228084	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,36:30:37:0.973:2	0/1:0,37:32:37:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,65:31:65:1.00:2	0/1:1,70:31:71:0.986:2	0/1:2,50:31:52:0.962:2	0/1:0,83:32:84:1.00:2	0/1:0,67:31:67:1.00:2	./.	0/1:1,47:33:49:0.979:2	0/1:0,52:32:52:1.00:2
chr18	47811374	rs17660776	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,32:32:81:0.395:2	./.	./.	./.	./.	./.	./.	./.
chr18	47812587	rs11555886	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,22:31:41:0.537:2	0/1:11,6:31:17:0.353:2	./.	0/1:30,27:30:57:0.474:2	0/1:2,53:30:55:0.964:2	./.	./.	0/1:25,23:31:48:0.479:2	./.	./.	0/1:1,51:31:52:0.981:2
chr18	47908556	rs6507992	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:32:3:1.00:2	0/1:0,71:32:71:1.00:2	0/1:19,14:32:34:0.424:2	./.	0/1:18,14:31:32:0.438:2	0/1:43,27:31:70:0.386:2	0/1:49,23:33:72:0.319:2	0/1:40,23:31:63:0.365:2	0/1:52,39:32:91:0.429:2
chr18	48190377	rs374524649	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:34:125:0.032:2	./.
chr18	48190412	rs3752086	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,11:30:29:0.379:2	./.	./.	./.	./.	./.	./.	./.	./.
chr18	48190440	rs3752087	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,89:31:90:0.989:2	0/1:0,47:32:47:1.00:2	0/1:6,8:31:14:0.571:2	0/1:55,62:30:117:0.530:2	0/1:63,53:30:116:0.457:2	0/1:1,134:31:135:0.993:2	0/1:65,58:30:123:0.472:2	0/1:60,52:31:113:0.464:2	0/1:68,52:32:120:0.433:2	0/1:43,45:31:88:0.511:2	0/1:1,101:31:102:0.990:2
chr18	48190817	rs45471400	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,28:30:68:0.418:2
chr18	48255677	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,8:31:14:0.571:2	./.
chr18	48327815	rs2276186	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,34:32:78:0.436:2	0/1:19,31:32:50:0.620:2	./.	0/1:42,38:31:80:0.475:2	0/1:27,22:32:49:0.449:2	0/1:1,68:32:69:0.986:2	0/1:0,64:32:64:1.00:2	0/1:44,39:33:83:0.470:2	0/1:1,77:33:78:0.987:2	./.	0/1:38,53:32:91:0.582:2
chr18	48331524	rs17852712	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,31:31:31:1.00:2	./.	0/1:0,19:32:19:1.00:2	0/1:41,23:31:64:0.359:2	./.	0/1:31,31:32:62:0.500:2	0/1:0,67:32:67:1.00:2
chr18	48331553	rs2849233	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,21:28:39:0.538:2	./.	0/1:1,36:31:37:0.973:2	0/1:50,33:29:83:0.398:2	./.	0/1:43,38:30:81:0.469:2	0/1:48,41:30:89:0.461:2
chr18	48331679	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,4:32:100:0.040:2	./.	./.	./.	./.	./.	./.
chr18	48333203	rs4940019	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,7:34:22:0.318:2	0/1:8,7:33:15:0.467:2	./.	0/1:2,26:33:28:0.929:2	0/1:10,4:32:14:0.286:2	0/1:0,26:32:26:1.00:2	./.	0/1:13,9:32:22:0.409:2	0/1:0,36:33:36:1.00:2	0/1:1,26:32:27:0.963:2	0/1:12,15:34:27:0.556:2
chr18	48346024	rs3813089	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,16:31:38:0.421:2	0/1:16,8:32:24:0.333:2	./.	0/1:38,35:30:73:0.479:2	0/1:23,35:28:58:0.603:2	./.	./.	./.	./.	./.	0/1:26,15:30:41:0.366:2
chr18	48443792	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:32:146:0.028:2	./.	./.	./.	./.	./.
chr18	48458662	rs649224	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,61:31:126:0.484:2	./.	./.	./.	./.	./.
chr18	48473494	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:30:83:0.048:2	./.	./.	./.	./.
chr18	48500829	rs201522971	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,46:33:95:0.484:2	./.	./.	./.
chr18	48500853	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:29:108:0.037:2	./.	./.	./.	./.	./.
chr18	48703190	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:32:126:0.032:2	./.	./.
chr18	48723217	rs35675106	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,7:32:7:1.00:2	./.	./.	0/1:0,5:32:5:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,5:34:5:1.00:2	./.	0/1:0,3:33:3:1.00:2
chr18	49867176	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,85:29:190:0.447:2	./.	./.	./.	./.	./.	./.	./.
chr18	49867224	rs9951523	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,160:33:160:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,11:32:11:1.00:2	0/1:93,95:33:188:0.505:2	0/1:0,154:32:154:1.00:2	0/1:0,174:33:174:1.00:2	0/1:0,168:33:168:1.00:2	0/1:0,168:33:168:1.00:2	0/1:0,174:33:174:1.00:2	0/1:0,152:33:152:1.00:2	./.
chr18	50278686	rs13381333	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:31:16:0.375:2	./.	./.	./.	./.	./.	./.	0/1:59,52:33:111:0.468:2	0/1:3,119:32:122:0.975:2
chr18	50432602	rs2229080	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,20:29:40:0.500:2	./.	0/1:29,23:30:52:0.442:2	0/1:0,41:29:41:1.00:2	./.	0/1:0,62:31:62:1.00:2	./.	0/1:0,47:30:47:1.00:2
chr18	50683727	rs45447193	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,48:31:99:0.485:2	./.	./.	./.
chr18	50936994	rs2229082	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:33:68:1.00:2	0/1:3,39:32:42:0.929:2	0/1:0,6:32:6:1.00:2	0/1:31,38:33:69:0.551:2	0/1:1,34:32:35:0.971:2	0/1:27,50:32:77:0.649:2	0/1:15,18:32:33:0.545:2	./.	./.	0/1:0,48:33:48:1.00:2	./.
chr18	51807123	rs3218788	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,43:33:73:0.589:2	./.	./.	./.	./.	./.
chr18	51820805	rs8305	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,40:32:40:1.00:2	0/1:24,16:31:40:0.400:2	0/1:0,37:31:37:1.00:2	./.	0/1:24,30:32:54:0.556:2	0/1:0,42:33:42:1.00:2	0/1:0,36:32:36:1.00:2	./.
chr18	51855721	rs2917782	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,4:33:15:0.267:2	./.	./.	0/1:5,9:33:14:0.643:2	./.	./.
chr18	51858197	rs17470798	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:37,36:32:73:0.493:2	0/1:16,16:31:32:0.500:2	./.	0/1:50,38:34:88:0.432:2	./.	0/1:26,39:32:65:0.600:2	./.	./.	./.	0/1:37,21:33:58:0.362:2	./.
chr18	51880889	rs17292725	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:30:11:1.00:2	0/1:77,49:32:126:0.389:2	./.	./.	./.	./.	./.	0/1:67,43:32:110:0.391:2	./.
chr18	51887123	rs1657904	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,22:31:43:0.512:2	./.	./.	0/1:33,28:32:61:0.459:2	./.	./.
chr18	51888169	rs1657907	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,36:32:113:0.319:2	./.	./.	0/1:80,54:33:134:0.403:2	./.	./.
chr18	51888173	rs79359715	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,31:31:106:0.292:2	./.	./.	0/1:75,56:32:131:0.427:2	./.	./.
chr18	52258548	rs35428499	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,26:32:60:0.433:2	./.	./.	./.	./.	./.	./.	./.
chr18	52265308	rs9947055	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:32:82:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,7:32:7:1.00:2	0/1:51,56:32:107:0.523:2	0/1:2,86:31:88:0.977:2	0/1:0,87:32:87:1.00:2	0/1:62,59:32:121:0.488:2	0/1:54,34:32:88:0.386:2	0/1:0,108:33:108:1.00:2	0/1:0,57:31:57:1.00:2	0/1:53,58:32:111:0.523:2
chr18	52544877	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,4:32:23:0.174:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	52586545	rs34751112	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,19:30:46:0.413:2	./.	./.	./.	./.
chr18	52605188	rs1344011	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,82:33:82:1.00:2	0/1:0,55:32:55:1.00:2	./.	./.	./.	0/1:63,31:31:94:0.330:2	./.	./.	./.	0/1:43,31:33:74:0.419:2	./.
chr18	52605279	rs72928889	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,20:31:60:0.333:2	0/1:15,15:30:30:0.500:2	./.	./.	./.	0/1:32,18:29:50:0.360:2	./.	./.	./.	0/1:39,19:31:58:0.328:2	./.
chr18	52895531	rs8766	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,27:29:27:1.00:2	0/1:0,24:27:24:1.00:2	./.	0/1:2,39:29:41:0.951:2	0/1:23,20:29:43:0.465:2	./.	0/1:18,16:28:34:0.471:2	0/1:23,17:30:40:0.425:2	0/1:0,36:28:36:1.00:2	0/1:11,14:29:26:0.560:2	./.
chr18	53303101	rs611326	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,28:32:28:1.00:2	0/1:0,12:31:12:1.00:2	./.	0/1:0,36:32:36:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,37:33:37:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,33:32:33:1.00:2
chr18	54270279	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:33:73:0.055:2	./.	./.
chr18	54281790	rs655539	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:34,22:33:56:0.393:2	0/1:15,6:33:21:0.286:2	./.	0/1:26,21:33:47:0.447:2	./.	./.	0/1:21,17:32:39:0.447:2	./.	./.	0/1:26,17:33:43:0.395:2	./.
chr18	54293658	rs14387	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,37:30:100:0.370:2	./.	0/1:47,44:30:91:0.484:2	./.	./.	./.	./.	./.
chr18	54293662	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,4:30:99:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr18	54339818	rs568078	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:30:31:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,6:28:6:1.00:2	0/1:0,72:30:72:1.00:2	0/1:1,38:29:39:0.974:2	0/1:0,55:30:55:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,74:29:74:1.00:2	0/1:1,60:30:61:0.984:2	0/1:0,60:31:60:1.00:2	0/1:0,39:29:39:1.00:2
chr18	54362221	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.	./.	./.
chr18	54448778	rs2302845	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:33,24:32:57:0.421:2	0/1:24,7:28:31:0.226:2	0/1:0,10:31:10:1.00:2	./.	0/1:0,81:31:81:1.00:2	./.	./.	0/1:40,35:32:75:0.467:2	0/1:46,39:33:85:0.459:2	0/1:30,16:32:46:0.348:2	0/1:45,33:31:78:0.423:2
chr18	55021725	rs3745060	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,13:33:27:0.481:2	./.	./.	./.	./.	0/1:24,31:31:55:0.564:2
chr18	55027334	rs1153626	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,55:32:174:0.316:2	./.	./.	./.	./.	0/1:94,65:33:159:0.409:2
chr18	55103512	rs79019704	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,9:30:18:0.500:2	./.	./.	./.	./.	./.
chr18	55104016	rs61735644	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,30:31:67:0.448:2	./.	./.	./.	./.	./.
chr18	55143766	rs3745074	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:19,13:32:32:0.406:2	0/1:16,3:31:19:0.158:2	./.	0/1:21,24:31:45:0.533:2	./.	./.	./.	./.	./.	./.	./.
chr18	55217944	rs202192675	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,11:9:33:0.333:2	./.	./.	./.	./.	./.	./.	./.
chr18	55221648	rs536560	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,13:29:38:0.342:2	0/1:21,20:28:41:0.488:2	0/1:0,9:28:9:1.00:2	0/1:0,66:26:66:1.00:2	0/1:0,58:27:58:1.00:2	0/1:0,59:27:59:1.00:2	0/1:1,53:28:54:0.981:2	0/1:51,34:28:85:0.400:2	0/1:0,65:29:65:1.00:2	0/1:0,48:27:48:1.00:2	0/1:33,35:26:68:0.515:2
chr18	55226383	rs536765	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,11:31:26:0.423:2	0/1:9,10:30:19:0.526:2	0/1:0,6:31:6:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,21:29:21:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,19:30:19:1.00:2	0/1:16,20:31:36:0.556:2	0/1:0,36:32:36:1.00:2	0/1:0,21:30:21:1.00:2	0/1:28,18:29:46:0.391:2
chr18	55240505	rs1041951	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,35:32:88:0.398:2	0/1:29,41:31:70:0.586:2	./.	0/1:37,26:32:63:0.413:2	./.	0/1:52,31:33:83:0.373:2	./.	./.
chr18	55247318	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:31:139:0.029:2	./.
chr18	55315732	rs2271771	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,22:31:36:0.611:2	./.	./.	./.	./.
chr18	55317653	rs117182648	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,67:32:152:0.441:2	./.	./.	./.	./.
chr18	55317658	rs200999435	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,6:32:163:0.037:2	./.	./.	./.	./.
chr18	55317676	rs222581	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,97:32:97:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,155:31:156:1.00:2	0/1:0,147:31:147:1.00:2	0/1:0,148:31:149:1.00:2	0/1:0,184:31:184:1.00:2	0/1:0,177:31:178:1.00:2	0/1:1,162:31:163:0.994:2	0/1:0,118:32:118:1.00:2	0/1:1,126:31:127:0.992:2
chr18	55338741	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr18	55342156	rs3745078	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,21:30:63:0.333:2	./.	./.	./.	./.
chr18	55355661	rs202128847	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,100:32:195:0.513:2	./.	./.	./.	./.	./.
chr18	55362532	rs319443	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:31:35:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,45:30:45:1.00:2
chr18	55364852	rs319438	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:29:85:1.00:2	0/1:0,34:28:34:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,113:29:113:1.00:2	0/1:1,116:29:117:0.991:2	0/1:1,157:29:158:0.994:2	0/1:0,135:29:135:1.00:2	0/1:0,145:29:145:1.00:2	0/1:0,110:29:110:1.00:2	0/1:0,139:29:139:1.00:2	0/1:0,119:29:119:1.00:2
chr18	55373767	rs3745079	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,28:33:80:0.350:2	./.	./.	./.	./.
chr18	55711867	rs113358301	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.
chr18	55816791	rs4149601	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:33:69:1.00:2	0/1:0,56:32:56:1.00:2	0/1:12,5:29:17:0.294:2	0/1:63,33:33:96:0.344:2	0/1:0,64:32:64:1.00:2	0/1:1,102:32:103:0.990:2	0/1:46,36:32:82:0.439:2	0/1:68,70:32:138:0.507:2	./.	0/1:42,61:32:103:0.592:2	0/1:73,61:32:134:0.455:2
chr18	56050540	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:33:49:0.082:2	./.
chr18	56149099	rs7240666	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,174:32:176:0.989:2	0/1:0,93:32:93:1.00:2	0/1:14,13:32:27:0.481:2	0/1:1,183:32:184:0.995:2	0/1:74,85:32:159:0.535:2	0/1:0,173:32:173:1.00:2	0/1:85,79:32:164:0.482:2	0/1:0,166:32:166:1.00:2	0/1:0,172:33:172:1.00:2	0/1:0,177:32:177:1.00:2	0/1:0,179:32:179:1.00:2
chr18	56191053	rs33969768	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,73:32:156:0.468:2
chr18	56196451	rs7236563	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:25,24:33:49:0.490:2	0/1:17,5:31:22:0.227:2	0/1:0,5:32:5:1.00:2	./.	0/1:2,36:31:38:0.947:2	0/1:0,64:31:64:1.00:2	0/1:16,11:31:27:0.407:2	./.	0/1:35,11:32:46:0.239:2	0/1:0,25:31:25:1.00:2	./.
chr18	56202120	rs7234999	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:115,73:31:188:0.388:2	0/1:73,50:31:123:0.407:2	./.	0/1:118,77:30:195:0.395:2	./.	./.	./.	./.	0/1:120,75:31:196:0.385:2	./.	0/1:4,185:31:189:0.979:2
chr18	56202231	rs17065127	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,120:32:125:0.968:2	./.	./.	./.
chr18	56202394	rs7240355	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:14,18:32:32:0.563:2	0/1:8,4:34:13:0.333:2	./.	0/1:10,15:31:25:0.600:2	./.	./.	./.	./.	0/1:16,13:31:29:0.448:2	./.	0/1:1,35:32:36:0.972:2
chr18	56202418	rs10469212	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:32:29:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,2:31:2:1.00:2	0/1:10,16:32:26:0.615:2	0/1:0,42:33:42:1.00:2	0/1:0,31:32:31:1.00:2	0/1:1,28:32:29:0.966:2	0/1:0,31:31:31:1.00:2	0/1:0,24:34:24:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,41:33:41:1.00:2
chr18	56202470	rs55656447	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,18:32:33:0.545:2	0/1:8,3:31:11:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	56202683	rs33910491	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:86,65:30:151:0.430:2	0/1:41,34:30:75:0.453:2	./.	0/1:77,81:30:159:0.513:2	./.	./.	./.	./.	0/1:85,76:30:161:0.472:2	./.	0/1:2,135:29:138:0.985:2
chr18	56202768	rs3809983	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:79,90:33:169:0.533:2	0/1:49,42:32:91:0.462:2	0/1:9,8:31:17:0.471:2	./.	0/1:70,61:31:131:0.466:2	0/1:1,152:32:153:0.993:2	0/1:80,67:32:147:0.456:2	./.	./.	0/1:2,137:32:139:0.986:2	./.
chr18	56202982	rs3826594	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:70,72:32:142:0.507:2	0/1:47,45:32:92:0.489:2	0/1:0,21:32:21:1.00:2	./.	0/1:1,78:32:79:0.987:2	0/1:0,157:32:157:1.00:2	0/1:61,82:32:143:0.573:2	./.	0/1:86,87:33:173:0.503:2	0/1:1,136:33:137:0.993:2	0/1:172,4:35:176:0.023:2
chr18	56203074	rs3809982	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:36,38:31:75:0.514:2	0/1:24,25:30:49:0.510:2	0/1:5,7:30:12:0.583:2	./.	0/1:35,33:31:68:0.485:2	0/1:0,116:30:116:1.00:2	0/1:36,50:31:86:0.581:2	./.	./.	0/1:1,87:31:88:0.989:2	./.
chr18	56203120	rs3809981	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:24,37:31:61:0.607:2	0/1:15,21:32:36:0.583:2	0/1:4,7:32:11:0.636:2	./.	0/1:21,28:30:49:0.571:2	0/1:0,78:31:78:1.00:2	0/1:16,33:32:49:0.673:2	./.	./.	0/1:1,58:31:59:0.983:2	./.
chr18	56203136	rs56145533	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,24:27:46:0.522:2	./.	./.	./.	./.	./.	./.
chr18	56203411	rs3809980	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:33,29:31:62:0.468:2	0/1:15,10:30:25:0.400:2	0/1:0,3:32:3:1.00:2	./.	0/1:1,40:30:41:0.976:2	0/1:0,51:30:51:1.00:2	0/1:27,18:31:45:0.400:2	./.	0/1:40,22:31:62:0.355:2	0/1:0,39:31:39:1.00:2	./.
chr18	56203447	rs3809979	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:43,33:33:76:0.434:2	0/1:19,13:32:32:0.406:2	0/1:0,9:33:9:1.00:2	./.	0/1:1,38:33:39:0.974:2	0/1:1,69:32:70:0.986:2	0/1:34,28:32:62:0.452:2	./.	0/1:46,29:33:75:0.387:2	0/1:0,46:32:46:1.00:2	./.
chr18	56203837	rs17065139	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,79:32:80:0.988:2	./.	./.	./.
chr18	56203891	rs3809978	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:49,29:32:78:0.372:2	0/1:22,19:33:41:0.463:2	0/1:0,6:32:6:1.00:2	./.	0/1:0,66:32:66:1.00:2	0/1:0,90:32:90:1.00:2	0/1:61,50:33:111:0.450:2	./.	0/1:49,41:34:90:0.456:2	0/1:0,47:33:47:1.00:2	./.
chr18	56203898	rs3809977	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:45,30:29:75:0.400:2	0/1:21,18:32:39:0.462:2	0/1:0,6:33:6:1.00:2	./.	0/1:0,65:31:66:1.00:2	0/1:0,87:32:87:1.00:2	0/1:59,46:32:105:0.438:2	./.	0/1:42,41:33:83:0.494:2	0/1:0,47:32:47:1.00:2	./.
chr18	56204250	rs3809976	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:83,57:32:142:0.407:2	0/1:42,39:32:81:0.481:2	0/1:0,11:31:11:1.00:2	./.	0/1:0,90:31:90:1.00:2	0/1:0,175:32:175:1.00:2	0/1:85,72:32:157:0.459:2	./.	0/1:91,65:33:156:0.417:2	0/1:2,114:32:116:0.983:2	./.
chr18	56204410	rs55910046	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:83,33:33:116:0.284:2	0/1:39,17:32:56:0.304:2	0/1:0,8:31:8:1.00:2	./.	0/1:0,57:31:57:1.00:2	0/1:1,71:31:72:0.986:2	0/1:117,27:32:144:0.188:2	./.	0/1:115,53:33:168:0.315:2	0/1:1,81:32:82:0.988:2	./.
chr18	56204489	rs3809975	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,49:32:87:0.563:2	./.	./.	./.	./.
chr18	56204644	rs12963422	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:26,25:32:51:0.490:2	0/1:12,12:32:24:0.500:2	./.	0/1:44,34:32:78:0.436:2	./.	./.	./.	./.	0/1:22,24:33:46:0.522:2	./.	0/1:0,73:31:73:1.00:2
chr18	56204671	rs4940404	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:29,16:28:45:0.356:2	0/1:12,13:31:25:0.520:2	0/1:0,4:30:4:1.00:2	./.	0/1:1,39:30:40:0.975:2	0/1:0,51:29:51:1.00:2	0/1:25,27:30:52:0.519:2	./.	0/1:24,30:31:54:0.556:2	0/1:0,33:29:33:1.00:2	./.
chr18	56204747	rs3826593	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:32:85:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,8:31:8:1.00:2	0/1:58,48:31:106:0.453:2	0/1:0,70:31:70:1.00:2	0/1:0,103:31:103:1.00:2	0/1:59,46:32:105:0.438:2	0/1:0,87:31:87:1.00:2	0/1:0,79:32:80:1.00:2	0/1:0,80:32:80:1.00:2	0/1:1,91:32:92:0.989:2
chr18	56204768	rs3809974	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,90:30:90:1.00:2	./.	0/1:89,4:32:93:0.043:2	./.
chr18	56204932	rs3809973	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:71,37:32:108:0.343:2	0/1:36,19:32:56:0.345:2	0/1:0,5:33:5:1.00:2	./.	0/1:1,56:31:57:0.982:2	0/1:2,70:32:72:0.972:2	0/1:53,15:32:68:0.221:2	./.	0/1:75,32:34:107:0.299:2	0/1:1,51:33:52:0.981:2	./.
chr18	56204945	rs3809972	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:77,37:32:114:0.325:2	0/1:40,23:32:63:0.365:2	0/1:0,7:33:7:1.00:2	./.	0/1:1,74:31:75:0.987:2	0/1:2,94:32:96:0.979:2	0/1:66,24:32:90:0.267:2	./.	0/1:88,23:32:111:0.207:2	0/1:3,55:32:58:0.948:2	./.
chr18	56204977	rs3809971	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:77,53:32:130:0.408:2	0/1:44,34:32:78:0.436:2	0/1:0,11:31:11:1.00:2	./.	0/1:1,144:31:146:0.993:2	0/1:1,140:31:141:0.993:2	0/1:106,71:32:177:0.401:2	./.	0/1:112,54:31:166:0.325:2	0/1:4,113:32:117:0.966:2	./.
chr18	56204991	rs3809970	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:92,59:31:151:0.391:2	0/1:45,39:32:84:0.464:2	0/1:0,10:31:10:1.00:2	./.	0/1:2,163:31:165:0.988:2	0/1:1,140:31:141:0.993:2	0/1:104,74:32:179:0.416:2	./.	0/1:102,74:32:176:0.420:2	0/1:4,134:31:138:0.971:2	./.
chr18	56205262	rs12103986	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:84,97:33:181:0.536:2	0/1:92,87:32:179:0.486:2	0/1:0,38:32:38:1.00:2	./.	0/1:1,174:32:175:0.994:2	0/1:0,185:32:185:1.00:2	0/1:100,82:33:182:0.451:2	./.	0/1:112,80:34:192:0.417:2	0/1:0,188:33:188:1.00:2	./.
chr18	56246442	rs12606191	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:53,29:31:82:0.354:2	0/1:23,24:30:47:0.511:2	./.	./.	0/1:33,24:31:57:0.421:2	0/1:34,28:30:62:0.452:2	0/1:32,40:32:72:0.556:2	0/1:2,81:31:83:0.976:2	./.	0/1:28,27:30:55:0.491:2	0/1:41,43:30:84:0.512:2
chr18	56246818	rs79863383	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,16:31:42:0.381:2	./.	./.	./.	./.	./.	./.
chr18	56247180	rs9958735	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:99,83:33:182:0.456:2	0/1:81,57:32:138:0.413:2	./.	./.	0/1:108,92:32:200:0.460:2	0/1:106,89:32:195:0.456:2	0/1:95,84:32:179:0.469:2	0/1:0,181:32:181:1.00:2	./.	0/1:0,159:32:159:1.00:2	0/1:99,86:32:185:0.465:2
chr18	56247567	rs9956630	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:104,89:33:193:0.461:2	0/1:66,52:32:118:0.441:2	./.	./.	0/1:103,79:32:182:0.434:2	0/1:109,81:32:190:0.426:2	0/1:147,50:32:197:0.254:2	0/1:5,181:32:186:0.973:2	./.	0/1:2,189:32:192:0.990:2	0/1:111,82:32:193:0.425:2
chr18	56247600	rs9944810	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:96,89:31:185:0.481:2	0/1:75,52:31:127:0.409:2	./.	./.	0/1:106,80:31:186:0.430:2	0/1:110,64:31:175:0.368:2	0/1:139,41:31:181:0.228:2	0/1:3,163:31:167:0.982:2	./.	0/1:2,168:31:171:0.988:2	0/1:108,79:31:187:0.422:2
chr18	56278946	rs34130191	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,38:31:67:0.567:2	./.	./.	./.
chr18	56279025	rs6566987	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:25:9:1.00:2	0/1:0,4:31:4:1.00:2	./.	./.	./.	0/1:0,11:31:11:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,6:33:6:1.00:2	0/1:4,4:31:8:0.500:2	0/1:0,3:31:3:1.00:2	0/1:2,7:32:9:0.778:2
chr18	56367823	rs74847855	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,12:32:29:0.414:2
chr18	56585774	rs80187708	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,51:29:105:0.486:2	./.	./.	./.	./.	./.	./.	./.
chr18	56586649	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,7:30:77:0.091:2	./.	./.	./.	./.	./.	./.	./.
chr18	56587650	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:32:181:0.022:2	./.	./.	./.
chr18	56587657	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,7:29:164:0.043:2	./.	0/1:185,6:29:191:0.031:2	./.	./.	./.
chr18	56615324	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,3:32:29:0.103:2	./.	./.	./.	./.	./.	./.	./.	./.
chr18	56620768	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:31:138:0.029:2	./.
chr18	56620842	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:32:181:0.022:2	./.	./.	./.	./.	./.
chr18	56620975	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:28:83:0.048:2	./.	./.	./.	0/1:111,9:26:120:0.075:2
chr18	56620986	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:31:112:0.036:2
chr18	56648756	rs61733373	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,84:31:185:0.454:2	0/1:52,53:32:105:0.505:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	56651227	rs9958389	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,54:30:116:0.466:2	./.	./.	./.	./.	./.	./.	./.
chr18	56887507	rs1062557	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:34:2:1.00:2	0/1:0,3:30:3:1.00:2	./.	./.	0/1:0,6:33:6:1.00:2	0/1:0,5:34:5:1.00:2	0/1:0,2:34:2:1.00:2	./.
chr18	56892947	rs15526	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,12:28:24:0.500:2	./.	./.	./.	./.	./.
chr18	56936395	rs7226481	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:33:3:1.00:2	0/1:2,2:33:4:0.500:2	./.
chr18	56939641	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:143,4:31:148:0.027:2	./.	./.	./.	./.	./.	./.
chr18	56940307	rs2271733	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:33:4:1.00:2	./.	0/1:0,2:32:2:1.00:2	./.	./.	0/1:0,2:35:2:1.00:2	./.	./.
chr18	57000469	rs2298711	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:33:6:0.500:2	0/1:41,31:32:72:0.431:2	./.	./.	./.	./.	0/1:44,24:34:68:0.353:2	./.	./.
chr18	57022754	rs1127220	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,22:31:54:0.407:2	./.	./.	./.	0/1:21,20:33:41:0.488:2	./.
chr18	57026361	rs33926449	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,26:32:67:0.388:2	./.	./.	./.	0/1:20,12:31:32:0.375:2	./.
chr18	57026364	rs142321880	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,32:30:55:0.582:2	./.	./.	./.	./.	./.	./.	./.
chr18	57026436	rs1043302	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,48:31:76:0.632:2	./.	./.	./.	./.	./.
chr18	57567670	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,8:13:18:0.444:2	./.	./.	./.	0/1:5,6:16:11:0.545:2	./.
chr18	57567679	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,5:29:19:0.263:2	./.	0/1:23,4:29:27:0.148:2	./.	./.	./.
chr18	57567699	rs78800940	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,15:30:42:0.357:2	./.	0/1:27,24:31:51:0.471:2	0/1:17,12:32:29:0.414:2	0/1:7,10:31:17:0.588:2	./.
chr18	58039760	rs34114122	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,56:33:130:0.431:2	./.	./.	./.	./.	./.	./.	./.
chr18	59166541	rs12964819	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,27:31:62:0.435:2	0/1:24,27:31:51:0.529:2	0/1:9,6:30:15:0.400:2	0/1:0,85:30:85:1.00:2	0/1:0,76:30:76:1.00:2	0/1:36,44:30:80:0.550:2	0/1:33,38:30:71:0.535:2	0/1:0,108:30:108:1.00:2	0/1:39,50:30:89:0.562:2	0/1:0,54:31:54:1.00:2	0/1:49,38:30:87:0.437:2
chr18	59170304	rs595093	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,73:32:74:0.986:2	0/1:0,32:32:32:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,79:33:79:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,116:32:116:1.00:2	0/1:0,120:32:121:1.00:2	0/1:0,74:33:74:1.00:2	0/1:0,58:33:58:1.00:2	0/1:0,74:32:74:1.00:2
chr18	59174759	rs1943330	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,35:31:72:0.486:2	./.	./.	./.	./.	./.	./.	./.
chr18	59483202	rs4538107	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,67:27:134:0.500:2	./.	./.
chr18	59483310	rs4362478	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,25:32:47:0.532:2	./.	./.
chr18	59483397	rs148598928	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,24:30:54:0.444:2	0/1:15,16:30:31:0.516:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	59483508	rs116886631	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,31:31:67:0.463:2	./.	./.
chr18	59483514	rs9319985	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,8:31:39:0.205:2	./.	./.	0/1:35,20:30:55:0.364:2	0/1:37,31:33:68:0.456:2	./.	./.
chr18	59483763	rs114618405	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,16:30:20:0.800:2	./.	./.	./.	./.	./.	./.	./.	./.
chr18	59749993	rs200850641	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,26:32:43:0.605:2	./.
chr18	59752485	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,52:31:116:0.448:2	./.	./.	./.	./.	./.
chr18	59768375	rs17714063	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:26,20:33:46:0.435:2	0/1:11,12:32:23:0.522:2	./.	./.	0/1:19,17:31:36:0.472:2	0/1:20,13:31:33:0.394:2	./.	0/1:0,48:32:48:1.00:2	./.	0/1:13,21:32:34:0.618:2	./.
chr18	59770033	rs12326381	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:25,13:31:38:0.342:2	0/1:10,10:31:20:0.500:2	./.	./.	0/1:11,9:30:20:0.450:2	0/1:20,12:30:32:0.375:2	./.	0/1:0,37:31:37:1.00:2	./.	0/1:22,17:31:39:0.436:2	./.
chr18	59774037	rs9319997	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:55,49:31:104:0.471:2	0/1:43,17:31:60:0.283:2	0/1:7,4:30:11:0.364:2	./.	0/1:59,75:30:134:0.560:2	0/1:61,52:31:113:0.460:2	./.	0/1:3,149:30:152:0.980:2	./.	0/1:60,38:30:99:0.388:2	./.
chr18	59774042	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,4:32:134:0.030:2	./.	./.	./.	./.	./.	./.
chr18	59780393	rs3862712	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,27:32:58:0.466:2	./.	./.	./.	./.
chr18	59780424	rs17714875	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:32,37:33:69:0.536:2	0/1:25,22:32:47:0.468:2	0/1:5,3:33:8:0.375:2	./.	0/1:25,27:32:52:0.519:2	0/1:38,35:32:73:0.479:2	./.	0/1:2,71:33:73:0.973:2	./.	0/1:44,32:33:76:0.421:2	./.
chr18	59781800	rs13381627	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:17,16:31:33:0.485:2	0/1:17,12:30:29:0.414:2	0/1:0,4:30:4:1.00:2	./.	0/1:9,10:30:19:0.526:2	0/1:11,15:30:26:0.577:2	./.	0/1:0,22:30:22:1.00:2	./.	0/1:19,35:30:54:0.648:2	./.
chr18	59805532	rs9959632	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:33:63:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,7:34:7:1.00:2	0/1:0,55:33:55:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,32:34:32:1.00:2	0/1:0,55:33:55:1.00:2	0/1:0,80:34:80:1.00:2	0/1:0,62:33:62:1.00:2	0/1:0,102:33:102:1.00:2
chr18	59807635	rs12608212	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,68:32:68:1.00:2	0/1:22,21:32:43:0.488:2	./.	./.	./.	0/1:32,34:33:66:0.515:2	0/1:18,24:32:42:0.571:2	./.
chr18	59810563	rs34227891	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:51,36:32:87:0.414:2	0/1:33,30:32:63:0.476:2	0/1:5,8:32:13:0.615:2	./.	0/1:64,29:32:93:0.312:2	0/1:43,33:32:76:0.434:2	./.	0/1:4,94:32:98:0.959:2	./.	0/1:60,35:32:95:0.368:2	./.
chr18	59814268	rs9320000	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:79,59:32:138:0.428:2	0/1:54,35:32:89:0.393:2	0/1:5,5:31:10:0.500:2	0/1:0,138:31:138:1.00:2	0/1:4,82:31:86:0.953:2	0/1:91,57:31:148:0.385:2	./.	0/1:0,133:31:133:1.00:2	0/1:83,74:32:157:0.471:2	0/1:2,107:32:109:0.982:2	./.
chr18	59814324	rs9320001	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,46:32:100:0.460:2	0/1:39,35:32:74:0.473:2	0/1:2,6:31:8:0.750:2	0/1:0,115:32:115:1.00:2	0/1:0,59:32:59:1.00:2	0/1:65,40:32:105:0.381:2	0/1:0,51:31:51:1.00:2	0/1:0,79:32:79:1.00:2	0/1:1,105:33:106:0.991:2	0/1:1,82:32:83:0.988:2	0/1:95,49:32:144:0.340:2
chr18	59828465	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:32:113:0.035:2	./.	./.	./.	./.	./.
chr18	59895759	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:32:73:0.055:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	59899576	rs3764493	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,32:31:81:0.395:2	./.	./.	./.	./.
chr18	59899594	rs376702378	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:32:127:0.032:2	./.
chr18	59936142	rs17645999	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,7:31:20:0.350:2	./.	0/1:34,32:31:66:0.485:2	0/1:56,45:31:101:0.446:2	./.	0/1:0,109:31:109:1.00:2	./.	0/1:44,40:31:84:0.476:2	./.
chr18	60021761	rs35211496	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,6:29:7:0.857:2	./.	./.	./.
chr18	60027241	rs1805034	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,36:32:93:0.387:2	0/1:37,25:31:62:0.403:2	0/1:2,17:30:19:0.895:2	0/1:55,41:31:96:0.427:2	0/1:31,27:31:58:0.466:2	./.	0/1:3,73:32:76:0.961:2	0/1:66,50:31:116:0.431:2	0/1:0,106:32:106:1.00:2	./.	0/1:93,49:31:143:0.345:2
chr18	60036083	rs8092336	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,106:30:106:1.00:2	0/1:0,68:29:68:1.00:2	0/1:0,12:29:12:1.00:2	0/1:2,127:30:129:0.984:2	0/1:0,135:29:135:1.00:2	0/1:2,128:30:130:0.985:2	0/1:0,133:30:133:1.00:2	0/1:0,157:30:157:1.00:2	0/1:0,147:31:147:1.00:2	0/1:0,89:29:89:1.00:2	0/1:0,111:30:111:1.00:2
chr18	60191428	rs7229802	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:31:17:1.00:2	0/1:0,14:32:14:1.00:2	./.	0/1:16,10:29:26:0.385:2	0/1:15,17:29:32:0.531:2	0/1:0,36:30:36:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,16:29:16:1.00:2	0/1:9,6:30:15:0.400:2
chr18	60227833	rs17070100	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,61:29:144:0.424:2	./.	./.	0/1:71,56:29:127:0.441:2	0/1:82,73:28:155:0.471:2	./.	0/1:57,59:30:116:0.509:2	./.
chr18	60231851	rs12956093	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,29:31:75:0.387:2	0/1:31,30:32:61:0.492:2	./.	./.	./.	0/1:0,99:31:99:1.00:2	./.	./.	0/1:69,68:33:137:0.496:2	./.	0/1:92,78:31:170:0.459:2
chr18	60232248	rs61740184	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,11:30:24:0.458:2	./.	./.	./.	./.	./.	./.	./.	./.
chr18	60237388	rs8096750	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,29:30:72:0.403:2	0/1:23,23:30:46:0.500:2	0/1:0,11:29:11:1.00:2	0/1:1,94:30:95:0.989:2	0/1:1,48:28:49:0.980:2	./.	0/1:0,48:29:48:1.00:2	0/1:0,86:29:86:1.00:2	0/1:45,43:31:88:0.489:2	0/1:0,67:30:67:1.00:2	./.
chr18	60241617	rs201968749	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,54:31:139:0.388:2	0/1:52,44:32:96:0.458:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	60241699	rs34413962	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,64:32:147:0.435:2	./.	./.	./.	./.	./.	0/1:44,50:31:94:0.532:2	./.
chr18	60241732	rs3744926	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,60:32:105:0.571:2	./.	0/1:1,123:33:124:0.992:2	0/1:3,139:32:142:0.979:2	0/1:67,52:33:119:0.437:2	0/1:44,38:33:82:0.463:2	./.
chr18	60562298	rs624821	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,22:33:58:0.379:2	0/1:21,21:33:42:0.500:2	0/1:0,7:32:7:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,27:32:27:1.00:2	0/1:26,47:32:73:0.644:2	0/1:35,18:32:53:0.340:2	0/1:26,50:32:76:0.658:2	0/1:2,79:33:81:0.975:2	0/1:27,20:33:47:0.426:2	0/1:39,35:32:74:0.473:2
chr18	60563131	rs112206318	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,29:30:56:0.518:2	./.	./.	./.	./.
chr18	60645509	rs34061095	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,21:31:44:0.477:2
chr18	60645894	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:147,4:31:151:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr18	60985879	rs1801018	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,26:31:42:0.619:2	0/1:0,52:30:52:1.00:2	./.	0/1:39,22:29:61:0.361:2	0/1:1,62:30:63:0.984:2	0/1:0,42:32:42:1.00:2	0/1:10,20:30:30:0.667:2	./.
chr18	61022791	rs2003149	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,15:30:33:0.455:2	0/1:0,28:29:28:1.00:2	./.	0/1:16,11:29:27:0.407:2	0/1:0,35:29:35:1.00:2	0/1:0,44:30:44:1.00:2	0/1:18,16:30:34:0.471:2	0/1:27,23:29:50:0.460:2
chr18	61060753	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:32:145:0.028:2	./.	./.
chr18	61156606	rs12454742	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,46:32:46:1.00:2	0/1:0,33:32:33:1.00:2	0/1:37,34:33:71:0.479:2	./.	0/1:51,39:33:90:0.433:2	0/1:52,25:33:77:0.325:2	0/1:62,31:32:93:0.333:2	0/1:0,43:33:43:1.00:2
chr18	61160287	rs2289519	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,5:33:8:0.625:2	0/1:0,60:32:60:1.00:2	0/1:1,31:31:32:0.969:2	0/1:19,13:32:32:0.406:2	./.	0/1:37,26:33:63:0.413:2	0/1:36,32:33:68:0.471:2	0/1:18,27:33:45:0.600:2	0/1:0,59:32:59:1.00:2
chr18	61160308	rs140393612	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,20:28:58:0.345:2	./.	./.
chr18	61160320	rs2289520	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,21:34:55:0.382:2	./.	./.
chr18	61170721	rs1455556	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,41:30:92:0.446:2	0/1:34,21:29:55:0.382:2	0/1:8,10:30:18:0.556:2	0/1:0,101:30:101:1.00:2	0/1:0,52:28:52:1.00:2	0/1:46,42:30:88:0.477:2	./.	0/1:47,38:29:85:0.447:2	0/1:60,52:31:112:0.464:2	0/1:34,29:30:64:0.460:2	0/1:1,99:29:100:0.990:2
chr18	61170782	rs1455555	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,39:32:72:0.542:2	0/1:38,26:32:64:0.406:2	0/1:43,43:33:86:0.500:2	./.	0/1:48,40:32:88:0.455:2	./.	0/1:31,39:32:70:0.557:2	0/1:0,95:32:95:1.00:2
chr18	61170925	rs8093128	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:33:40:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,79:33:79:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,88:33:88:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,77:33:77:1.00:2	0/1:0,67:33:67:1.00:2	0/1:0,63:33:63:1.00:2	0/1:0,73:33:73:1.00:2
chr18	61231263	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,5:28:199:0.025:2	./.	./.	./.
chr18	61254665	rs151127935	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,55:32:120:0.458:2	0/1:48,27:33:75:0.360:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	61264298	rs1020694	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,34:32:78:0.436:2	0/1:32,23:32:55:0.418:2	0/1:0,9:32:9:1.00:2	0/1:1,129:32:130:0.992:2	0/1:2,101:32:103:0.981:2	0/1:78,61:33:139:0.439:2	./.	./.	0/1:0,100:33:100:1.00:2	0/1:49,56:33:105:0.533:2	0/1:0,83:33:83:1.00:2
chr18	61264468	rs1020693	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,35:32:62:0.565:2	0/1:19,20:31:39:0.513:2	0/1:0,8:32:8:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,66:32:66:1.00:2	0/1:32,40:32:72:0.556:2	./.	./.	0/1:0,81:32:81:1.00:2	./.	0/1:0,34:31:34:1.00:2
chr18	61305079	rs58958857	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,39:29:98:0.402:2	./.
chr18	61305261	rs199677518	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:34:172:0.023:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	61305291	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:32:161:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	61310374	rs2687472	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,68:31:147:0.463:2	0/1:50,48:32:98:0.490:2	./.	./.	./.	0/1:73,77:31:151:0.513:2	0/1:9,137:32:146:0.938:2	0/1:9,184:31:193:0.953:2	./.	0/1:100,95:31:195:0.487:2	./.
chr18	61310738	rs55883719	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,84:33:188:0.449:2	./.
chr18	61322998	rs73962331	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,46:32:118:0.390:2	./.
chr18	61323012	rs3180227	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,67:32:145:0.462:2	0/1:54,46:32:100:0.460:2	./.	./.	./.	0/1:72,64:32:136:0.471:2	0/1:2,121:32:123:0.984:2	0/1:98,78:32:176:0.443:2	./.	0/1:36,68:32:104:0.654:2	./.
chr18	61323228	rs61748838	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,57:33:137:0.416:2	./.
chr18	61323259	rs150069636	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,78:33:135:0.578:2	./.	./.
chr18	61377579	rs1395268	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:33:68:1.00:2	0/1:0,36:33:36:1.00:2	0/1:5,5:32:10:0.500:2	0/1:51,35:32:86:0.407:2	0/1:41,35:32:76:0.461:2	0/1:0,75:33:75:1.00:2	0/1:2,76:32:78:0.974:2	0/1:1,89:33:90:0.989:2	0/1:0,64:33:64:1.00:2	0/1:0,63:33:63:1.00:2	0/1:1,77:32:78:0.987:2
chr18	61379838	rs4940595	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,69:29:69:1.00:2	0/1:0,50:29:50:1.00:2	./.	./.	./.	0/1:46,46:28:92:0.500:2	0/1:0,81:30:81:1.00:2	0/1:0,94:29:94:1.00:2	./.	0/1:35,29:28:64:0.453:2	./.
chr18	61383354	rs17071550	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,58:32:58:1.00:2	0/1:3,49:32:52:0.942:2	./.	./.	./.	0/1:34,16:32:50:0.320:2	0/1:2,45:32:47:0.957:2	0/1:3,61:32:64:0.953:2	./.	0/1:41,31:33:72:0.431:2	./.
chr18	61383368	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:32:95:0.042:2
chr18	61387312	rs1506418	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,63:31:65:0.969:2	0/1:0,36:31:36:1.00:2	./.	./.	./.	0/1:46,34:30:80:0.425:2	0/1:1,21:30:22:0.955:2	0/1:0,65:30:65:1.00:2	./.	0/1:43,19:30:62:0.306:2	./.
chr18	61387333	rs1506419	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,75:33:76:0.987:2	0/1:0,38:32:38:1.00:2	./.	./.	./.	0/1:52,38:31:90:0.422:2	0/1:2,27:32:29:0.931:2	0/1:0,79:32:79:1.00:2	./.	0/1:55,30:32:85:0.353:2	./.
chr18	61387389	rs1506420	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,64:33:65:0.985:2	0/1:1,39:32:40:0.975:2	./.	./.	./.	0/1:53,43:31:96:0.448:2	0/1:2,36:32:38:0.947:2	0/1:1,89:32:90:0.989:2	./.	0/1:51,29:32:80:0.363:2	./.
chr18	61390316	rs1395265	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,49:33:50:0.980:2	0/1:0,23:31:23:1.00:2	0/1:1,3:32:4:0.750:2	0/1:33,17:32:51:0.340:2	0/1:20,19:33:39:0.487:2	0/1:0,30:32:30:1.00:2	0/1:0,33:32:33:1.00:2	0/1:2,45:32:47:0.957:2	0/1:52,20:33:72:0.278:2	0/1:0,34:33:34:1.00:2	0/1:0,46:33:46:1.00:2
chr18	61390332	rs1395266	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,34:32:36:0.944:2	0/1:0,19:32:19:1.00:2	0/1:0,3:31:3:1.00:2	0/1:33,13:30:46:0.283:2	0/1:21,15:31:36:0.417:2	0/1:0,27:30:27:1.00:2	0/1:0,27:31:27:1.00:2	0/1:2,41:32:43:0.953:2	0/1:47,16:31:63:0.254:2	0/1:0,34:32:34:1.00:2	0/1:0,43:31:43:1.00:2
chr18	61390361	rs1395267	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,26:32:29:0.897:2	0/1:0,17:32:17:1.00:2	0/1:0,3:31:3:1.00:2	0/1:26,14:32:40:0.350:2	0/1:20,15:31:35:0.429:2	0/1:0,24:30:25:1.00:2	0/1:0,25:31:25:1.00:2	0/1:2,32:33:34:0.941:2	0/1:37,9:32:46:0.196:2	0/1:0,21:32:21:1.00:2	0/1:0,38:32:38:1.00:2
chr18	61390570	rs953695	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,134:33:134:1.00:2	0/1:0,77:32:77:1.00:2	0/1:18,12:31:30:0.400:2	0/1:91,76:33:167:0.455:2	0/1:72,80:32:152:0.526:2	0/1:0,135:32:135:1.00:2	0/1:1,144:32:146:0.993:2	0/1:2,145:32:147:0.986:2	0/1:70,97:34:167:0.581:2	0/1:0,134:33:134:1.00:2	0/1:0,153:32:153:1.00:2
chr18	61471523	rs17782413	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	./.
chr18	61471529	rs61735186	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,13:31:14:0.929:2	./.	./.	./.	./.	./.	./.
chr18	61562554	rs200884637	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,30:31:89:0.337:2
chr18	61564393	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:30:75:0.053:2	./.	./.
chr18	61564394	rs6098	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,27:33:65:0.415:2	0/1:39,37:32:76:0.487:2	./.	./.	./.
chr18	61570402	rs139893427	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:90,85:31:175:0.486:2	./.	./.	./.	./.	./.	./.
chr18	61570470	rs6102	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,55:29:106:0.519:2	0/1:73,49:30:122:0.402:2	./.	./.	./.
chr18	61570503	rs6103	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,26:32:57:0.456:2	0/1:51,25:32:76:0.329:2	./.	./.	./.
chr18	61570529	rs6104	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,12:33:31:0.387:2	0/1:32,19:33:51:0.373:2	./.	./.	./.
chr18	61575232	rs1006961	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,22:32:58:0.379:2	0/1:67,66:32:133:0.496:2	./.	./.	./.
chr18	61582751	rs17072097	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,36:29:80:0.450:2	0/1:67,68:28:135:0.504:2	./.	./.	./.
chr18	61582867	rs8097425	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,36:32:89:0.404:2	0/1:68,56:32:124:0.452:2	./.	./.	./.
chr18	61585260	rs724558	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,17:32:62:0.274:2	0/1:51,29:32:80:0.363:2	./.	./.	./.
chr18	61587067	rs9967382	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,15:32:44:0.341:2	0/1:39,34:31:73:0.466:2	./.	./.	./.
chr18	61600384	rs963075	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,21:32:47:0.447:2	0/1:34,31:33:65:0.477:2	./.	./.	./.
chr18	61602360	rs35453062	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,15:31:29:0.517:2	./.	./.	0/1:21,29:32:50:0.580:2	./.	0/1:25,26:32:51:0.510:2	./.
chr18	61620766	rs9945924	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,9:32:34:0.265:2	./.	./.	./.
chr18	61647069	rs1944270	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,19:33:39:0.487:2	./.	0/1:34,29:33:63:0.460:2	./.	0/1:42,40:32:82:0.488:2
chr18	61650865	rs11537989	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,21:31:62:0.339:2	./.	./.	./.	./.	./.	./.
chr18	61654297	rs3169983	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:34:15:0.533:2	./.	0/1:63,46:32:109:0.422:2	./.	./.	./.	0/1:73,55:33:128:0.430:2	./.	0/1:72,57:33:129:0.442:2
chr18	61654329	rs3744958	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,56:32:102:0.549:2	./.
chr18	61654463	rs3826616	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,25:29:50:0.500:2	0/1:21,16:30:38:0.432:2	./.	0/1:0,82:30:82:1.00:2	0/1:0,51:29:51:1.00:2	0/1:47,24:30:72:0.338:2	0/1:2,51:29:53:0.962:2	0/1:1,61:30:62:0.984:2	0/1:0,67:31:67:1.00:2	0/1:26,33:28:59:0.559:2	0/1:29,52:30:81:0.642:2
chr18	63430135	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,18:31:49:0.375:2	./.	./.
chr18	63477218	rs7235166	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,27:31:51:0.529:2	./.	./.
chr18	63489378	rs8097752	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:31:69:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,106:30:106:1.00:2	0/1:63,56:30:119:0.471:2	0/1:62,54:30:116:0.466:2	0/1:0,80:30:81:1.00:2	0/1:75,34:30:109:0.312:2	0/1:0,114:32:114:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,88:31:88:1.00:2
chr18	63489410	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:31:135:0.030:2	./.	./.	./.	./.	./.
chr18	63511176	rs2306675	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:29:12:0.667:2	./.	0/1:83,63:29:146:0.432:2	0/1:91,92:30:183:0.503:2	0/1:95,67:29:162:0.414:2	./.	0/1:93,72:29:166:0.436:2	0/1:87,68:29:155:0.439:2	0/1:1,135:28:136:0.993:2
chr18	63530016	rs2291343	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,109:32:109:1.00:2	0/1:0,62:33:62:1.00:2	0/1:9,5:32:14:0.357:2	0/1:0,132:32:132:1.00:2	0/1:88,77:32:165:0.467:2	0/1:66,83:32:149:0.557:2	0/1:102,79:33:182:0.436:2	0/1:4,138:32:142:0.972:2	./.	0/1:64,64:32:128:0.500:2	./.
chr18	64176365	rs1055335	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,78:29:167:0.467:2	0/1:0,157:30:157:1.00:2	./.	0/1:91,69:30:160:0.431:2	./.	./.	0/1:71,64:31:135:0.474:2	./.
chr18	64211251	rs72954429	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:14,15:32:29:0.517:2	0/1:5,6:31:11:0.545:2	0/1:2,4:32:6:0.667:2	./.	./.	./.	./.	0/1:23,12:31:35:0.343:2	./.	./.	./.
chr18	64221713	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,7:31:77:0.091:2	./.	./.	./.	./.	./.
chr18	64239409	rs80135198	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,41:32:73:0.562:2	./.
chr18	65179829	rs2279269	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,88:32:88:1.00:2	0/1:0,50:32:50:1.00:2	./.	0/1:0,97:31:97:1.00:2	0/1:0,65:31:65:1.00:2	./.	0/1:44,32:32:76:0.421:2	0/1:64,48:32:112:0.429:2	0/1:2,139:32:141:0.986:2	0/1:40,60:32:101:0.600:2	0/1:82,52:32:135:0.388:2
chr18	65182392	rs2291172	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,80:33:156:0.513:2	./.	./.	./.
chr18	66348328	rs117449369	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,20:30:42:0.476:2	./.	./.	./.	./.	./.	./.	./.
chr18	66504093	rs485613	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:32:56:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,69:33:69:1.00:2	0/1:1,62:31:63:0.984:2	0/1:0,78:33:78:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,75:31:75:1.00:2
chr18	66504351	rs637051	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,4:32:8:0.500:2	0/1:51,33:31:84:0.393:2	./.	0/1:1,66:31:67:0.985:2	0/1:3,50:32:53:0.943:2	0/1:50,38:32:88:0.432:2	0/1:0,61:32:61:1.00:2	./.	./.
chr18	66504459	rs572020	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,93:32:93:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,16:31:16:1.00:2	0/1:2,116:31:118:0.983:2	0/1:0,78:31:78:1.00:2	0/1:1,114:31:115:0.991:2	0/1:0,90:32:90:1.00:2	0/1:0,108:32:109:1.00:2	0/1:0,128:33:128:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,154:32:154:1.00:2
chr18	66506038	rs12954054	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,21:32:47:0.447:2	0/1:9,13:32:22:0.591:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	66513615	rs2187094	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:20,36:32:56:0.643:2	0/1:8,15:32:23:0.652:2	0/1:0,4:33:4:1.00:2	./.	./.	0/1:24,35:32:59:0.593:2	0/1:0,41:32:41:1.00:2	0/1:1,70:32:71:0.986:2	0/1:46,42:34:88:0.477:2	./.	0/1:35,37:33:72:0.514:2
chr18	66542006	rs745894	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,16:32:28:0.571:2	0/1:1,18:31:19:0.947:2	./.	./.	./.	./.	./.	./.
chr18	66678232	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:30:105:0.038:2	./.	./.
chr18	67345034	rs8099030	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,45:32:45:1.00:2	0/1:0,17:32:17:1.00:2	./.	./.	0/1:0,49:31:49:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,45:32:46:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,43:33:44:1.00:2	0/1:0,35:32:35:1.00:2	./.
chr18	67365668	rs4426448	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:37,42:30:79:0.532:2	0/1:21,18:28:39:0.462:2	0/1:7,4:29:11:0.364:2	./.	0/1:1,67:28:68:0.985:2	0/1:43,58:29:101:0.574:2	./.	0/1:57,57:28:114:0.500:2	0/1:0,111:29:111:1.00:2	./.	./.
chr18	67531642	rs763361	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,109:29:111:0.982:2	0/1:3,72:28:75:0.960:2	0/1:0,14:28:14:1.00:2	0/1:73,46:30:119:0.387:2	0/1:0,76:29:76:1.00:2	./.	0/1:0,115:29:115:1.00:2	0/1:76,60:28:136:0.441:2	0/1:0,126:30:126:1.00:2	0/1:1,103:29:104:0.990:2	0/1:88,52:29:140:0.371:2
chr18	67531644	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:32:144:0.028:2	./.	./.	./.	./.	./.
chr18	67534632	rs72481819	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,6:32:39:0.154:2	./.	./.
chr18	67562941	rs142661943	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:33:76:0.053:2	./.	./.	./.
chr18	67673697	rs34989098	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:29:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr18	67687860	rs2304378	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,43:31:88:0.489:2	0/1:61,41:31:102:0.402:2	0/1:0,89:31:89:1.00:2	0/1:50,47:31:97:0.485:2	0/1:50,55:33:105:0.524:2	./.	./.
chr18	67696011	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:31:60:0.067:2	./.	./.	./.	./.	./.
chr18	67718688	rs4891392	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:33:28:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,36:31:36:1.00:2	0/1:1,38:32:39:0.974:2	0/1:12,23:32:35:0.657:2	0/1:21,23:33:44:0.523:2	0/1:0,54:34:54:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,48:33:48:1.00:2
chr18	67788919	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.	./.
chr18	67801786	rs75225724	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,24:32:46:0.522:2	./.	./.	./.	./.
chr18	67802449	rs35139926	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,23:32:55:0.418:2	./.
chr18	67816218	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:31:125:0.032:2
chr18	67863844	rs17082206	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,49:32:94:0.521:2	./.	./.	./.
chr18	67871343	rs3911730	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,53:31:56:0.946:2	0/1:1,28:30:29:0.966:2	0/1:0,12:29:12:1.00:2	0/1:1,59:30:60:0.983:2	0/1:0,54:30:54:1.00:2	0/1:0,30:30:30:1.00:2	0/1:32,16:31:48:0.333:2	0/1:48,26:30:74:0.351:2	0/1:1,64:31:65:0.985:2	0/1:0,45:31:45:1.00:2	0/1:0,79:29:79:1.00:2
chr18	67992279	rs2231562	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,9:30:41:0.220:2	0/1:17,18:30:35:0.514:2	./.	0/1:0,19:31:19:1.00:2	./.
chr18	67992579	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:32:164:0.024:2	./.
chr18	67992684	rs1047657	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,17:31:30:0.567:2	./.	./.	./.	0/1:104,85:31:189:0.450:2	./.	./.	./.	0/1:0,165:31:167:1.00:2
chr18	67993335	rs138505386	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:34:58:0.069:2	./.	./.
chr18	67995136	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,34:29:93:0.366:2	./.
chr18	67995834	rs7231397	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,8:32:22:0.364:2	./.	0/1:24,17:32:41:0.415:2	./.	0/1:0,39:32:39:1.00:2
chr18	67996441	rs190245962	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,20:30:60:0.333:2	./.	./.	./.	./.	./.	./.
chr18	70416312	rs191115828	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,30:33:68:0.441:2	./.	./.	./.	./.	./.	./.
chr18	70417396	rs922999	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,174:31:174:1.00:2	0/1:0,98:31:98:1.00:2	0/1:0,16:30:17:1.00:2	0/1:0,181:31:181:1.00:2	0/1:0,175:30:175:1.00:2	0/1:0,144:31:145:1.00:2	0/1:0,180:31:180:1.00:2	0/1:0,184:31:184:1.00:2	0/1:0,170:32:170:1.00:2	0/1:0,139:31:140:1.00:2	0/1:0,173:31:174:1.00:2
chr18	70532840	rs10164255	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,69:33:113:0.611:2	0/1:25,30:32:55:0.545:2	./.	0/1:1,117:33:118:0.992:2	0/1:54,42:32:96:0.438:2	0/1:0,104:32:104:1.00:2	0/1:53,49:32:102:0.480:2	0/1:60,46:32:106:0.434:2	0/1:58,47:34:105:0.448:2	0/1:0,104:33:104:1.00:2	0/1:79,55:32:134:0.410:2
chr18	71796657	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:34:76:0.053:2	./.	./.	./.
chr18	71816278	rs3737512	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:30:7:0.571:2	./.	0/1:35,18:30:53:0.340:2	./.	./.	./.	./.	./.	./.
chr18	71928150	rs7238987	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,27:32:43:0.628:2	./.	./.	./.	./.	0/1:22,3:33:25:0.120:2	./.
chr18	71959075	rs76198400	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,46:28:134:0.343:2	./.	./.	./.	./.	0/1:85,57:30:142:0.401:2	./.
chr18	72103782	rs2278154	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,19:28:29:0.655:2	./.	0/1:5,7:24:12:0.583:2	./.	0/1:10,11:28:21:0.524:2	./.	./.	0/1:10,9:27:19:0.474:2
chr18	72114455	rs8087020	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:30:48:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,67:29:67:1.00:2	0/1:0,44:28:44:1.00:2	0/1:0,35:29:35:1.00:2	0/1:0,67:29:67:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,51:29:51:1.00:2	0/1:0,26:30:26:1.00:2
chr18	72168608	rs2303463	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,10:32:19:0.526:2	./.	./.	0/1:91,87:32:178:0.489:2	./.	./.	0/1:94,72:33:166:0.434:2	./.	0/1:0,126:32:126:1.00:2
chr18	72176083	rs2278161	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:38,25:33:63:0.397:2	0/1:27,18:32:45:0.400:2	0/1:5,3:33:8:0.375:2	./.	./.	0/1:64,33:32:97:0.340:2	0/1:88,3:35:91:0.033:2	./.	0/1:64,43:33:107:0.402:2	./.	0/1:0,81:32:81:1.00:2
chr18	72178062	rs35740490	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,55:32:105:0.524:2	0/1:43,37:32:80:0.463:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	72178161	rs2278159	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.	./.	0/1:83,79:29:162:0.488:2	./.	./.	0/1:86,75:29:161:0.466:2	./.	0/1:0,130:28:130:1.00:2
chr18	72185847	rs143480659	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,5:31:20:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.
chr18	72201918	rs11151964	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:30,28:32:58:0.483:2	0/1:19,18:32:37:0.486:2	0/1:4,11:33:15:0.733:2	./.	0/1:29,27:32:56:0.482:2	0/1:45,31:32:76:0.408:2	./.	./.	./.	0/1:27,27:31:54:0.500:2	./.
chr18	72228124	rs4263028	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:28:48:1.00:2	0/1:0,27:28:27:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,106:29:106:1.00:2	0/1:0,119:29:119:1.00:2	0/1:0,73:28:73:1.00:2	0/1:0,111:29:111:1.00:2	0/1:0,140:29:140:1.00:2	0/1:0,92:30:92:1.00:2	0/1:0,81:29:81:1.00:2	0/1:0,91:29:91:1.00:2
chr18	72234625	rs140836083	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,58:30:101:0.574:2	./.
chr18	72234635	rs12960862	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,30:32:74:0.405:2	0/1:24,16:31:40:0.400:2	./.	0/1:2,77:32:79:0.975:2	0/1:31,34:32:65:0.523:2	0/1:0,61:31:61:1.00:2	0/1:53,32:31:85:0.376:2	0/1:60,34:31:94:0.362:2	0/1:0,101:33:101:1.00:2	./.	0/1:0,91:32:92:1.00:2
chr18	72238472	rs73973908	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,56:31:148:0.378:2	./.	./.	./.	./.
chr18	72343008	rs7243081	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,18:29:18:1.00:2	0/1:0,9:30:9:1.00:2	./.	0/1:0,29:30:29:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,20:30:20:1.00:2	0/1:1,27:30:28:0.964:2	0/1:0,34:30:34:1.00:2	0/1:0,33:29:33:1.00:2
chr18	72343156	rs75994611	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,12:34:42:0.286:2	./.	0/1:8,21:32:29:0.724:2	./.
chr18	72344223	rs3794941	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,28:29:62:0.452:2	./.	0/1:33,34:30:67:0.507:2	./.	./.
chr18	72344238	rs17817969	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,32:31:64:0.500:2	./.	./.	./.	./.	0/1:51,40:32:91:0.440:2
chr18	72344509	rs7227263	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,13:32:32:0.406:2	./.	./.	./.	./.	0/1:34,29:32:63:0.460:2
chr18	72344553	rs7227391	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,24:31:58:0.414:2	./.	./.	./.	./.	0/1:60,44:32:104:0.423:2
chr18	72345890	rs948615	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,36:33:86:0.419:2	./.	0/1:65,61:33:126:0.484:2	./.	./.
chr18	72347482	rs12327359	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:20,22:33:42:0.524:2	0/1:11,12:33:23:0.522:2	./.	0/1:18,18:32:36:0.500:2	./.	0/1:0,36:32:36:1.00:2	0/1:14,16:32:30:0.533:2	./.	0/1:22,23:34:45:0.511:2	./.	0/1:24,22:32:46:0.478:2
chr18	72775707	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,25:30:42:0.595:2	./.	./.	./.	./.	./.
chr18	72776121	rs3744913	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:33:38:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,2:32:2:1.00:2	0/1:33,35:32:68:0.515:2	0/1:0,96:32:96:1.00:2	0/1:36,31:32:67:0.463:2	0/1:44,47:32:91:0.516:2	0/1:1,95:32:96:0.990:2	0/1:0,55:33:55:1.00:2	0/1:0,44:33:44:1.00:2	0/1:19,16:32:35:0.457:2
chr18	72913920	rs61910717	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,34:32:63:0.540:2	./.	./.	./.	./.	./.	./.	./.
chr18	72914280	rs7230037	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,28:32:46:0.609:2	0/1:13,12:31:25:0.480:2	./.	./.	0/1:35,15:31:50:0.300:2	0/1:0,52:31:52:1.00:2	0/1:46,34:32:80:0.425:2	0/1:48,39:31:87:0.448:2	0/1:28,15:32:43:0.349:2	0/1:35,19:32:54:0.352:2	0/1:31,28:32:59:0.475:2
chr18	72997677	rs3826609	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,16:31:40:0.400:2	0/1:17,24:29:41:0.585:2	0/1:21,13:31:34:0.382:2	0/1:21,17:30:38:0.447:2	0/1:15,20:29:35:0.571:2	0/1:0,26:31:26:1.00:2	0/1:14,15:30:29:0.517:2	0/1:19,21:32:40:0.525:2
chr18	72998004	rs3744908	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,7:31:9:0.778:2	0/1:44,31:30:75:0.413:2	0/1:44,40:30:84:0.476:2	0/1:40,31:31:71:0.437:2	0/1:43,26:30:69:0.377:2	0/1:37,36:29:73:0.493:2	0/1:2,64:30:66:0.970:2	0/1:34,27:30:61:0.443:2	0/1:30,17:31:47:0.362:2
chr18	72998268	rs3744909	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,8:30:25:0.320:2	0/1:47,51:28:98:0.520:2	0/1:92,78:27:170:0.459:2	0/1:87,64:29:151:0.424:2	0/1:105,73:28:178:0.410:2	0/1:97,63:28:160:0.394:2	0/1:0,113:30:113:1.00:2	0/1:52,34:29:86:0.395:2	0/1:61,35:29:96:0.365:2
chr18	72998886	rs3809997	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,14:28:18:0.778:2	0/1:1,4:25:5:0.800:2	0/1:5,3:31:8:0.375:2	0/1:9,5:30:14:0.357:2	./.	0/1:0,11:30:11:1.00:2	0/1:10,8:29:18:0.444:2	0/1:5,5:30:10:0.500:2
chr18	72999163	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr18	72999359	rs55679337	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,27:28:59:0.458:2	0/1:50,39:29:89:0.438:2	0/1:30,40:27:70:0.571:2	0/1:54,46:29:100:0.460:2	0/1:74,36:29:110:0.327:2	0/1:0,43:29:43:1.00:2	0/1:19,26:29:45:0.578:2	0/1:27,21:27:48:0.438:2
chr18	72999748	rs367753067	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,20:32:39:0.513:2
chr18	73000005	rs34878160	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,10:31:22:0.455:2	./.	./.	./.	./.	./.	./.
chr18	74083513	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,14:31:23:0.609:2	./.	./.	./.	./.
chr18	74090864	rs140499406	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,35:32:64:0.547:2	0/1:9,13:33:22:0.591:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	74091718	rs17059302	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,52:30:112:0.464:2	./.	./.	./.	./.	./.	0/1:34,43:31:77:0.558:2
chr18	74092080	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:32:164:0.024:2	./.
chr18	74580780	rs2276211	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:32:11:0.364:2	0/1:5,12:32:17:0.706:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	74587458	rs2276210	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,22:31:45:0.489:2	0/1:21,17:32:38:0.447:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	74611127	rs608433	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:31:51:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,46:32:46:1.00:2	0/1:1,44:32:45:0.978:2	0/1:24,20:31:44:0.455:2	0/1:0,53:32:53:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,53:32:53:1.00:2
chr18	74627613	rs34208338	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,69:32:148:0.466:2	0/1:37,39:32:76:0.513:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	74659494	rs9961872	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,17:30:27:0.630:2	0/1:15,7:29:23:0.318:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	74671768	rs470403	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:32:42:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,6:33:6:1.00:2	0/1:17,22:32:39:0.564:2	0/1:18,21:31:39:0.538:2	0/1:0,50:32:50:1.00:2	0/1:0,54:33:54:1.00:2	0/1:31,21:32:52:0.404:2	0/1:0,35:33:35:1.00:2	0/1:17,16:32:33:0.485:2	0/1:16,8:32:24:0.333:2
chr18	74672741	rs72987221	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,30:32:76:0.395:2
chr18	74680208	rs73968242	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,6:28:22:0.273:2	0/1:12,5:33:17:0.294:2	./.	./.	0/1:9,9:32:19:0.500:2	0/1:0,25:31:25:1.00:2	0/1:0,28:31:28:1.00:2	0/1:11,20:31:31:0.645:2	0/1:0,33:32:33:1.00:2	0/1:15,16:31:31:0.516:2	0/1:13,14:31:27:0.519:2
chr18	74680259	rs657066	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,6:32:18:0.333:2	0/1:10,4:32:14:0.286:2	0/1:0,3:32:3:1.00:2	0/1:19,15:32:34:0.441:2	0/1:0,26:32:26:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,26:34:26:1.00:2	0/1:0,21:33:21:1.00:2
chr18	74696703	rs78986303	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,21:30:49:0.429:2	./.	./.	./.	./.	./.	./.	./.
chr18	74728823	rs61742988	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,25:32:42:0.595:2	./.	./.	./.	./.	./.	./.	./.
chr18	74962645	rs5374	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:32:59:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,40:31:40:1.00:2	0/1:41,42:30:83:0.506:2	0/1:0,25:31:25:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,18:29:18:1.00:2
chr18	74962810	rs5375	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,53:31:124:0.427:2	./.	./.	./.	./.	./.	./.	./.
chr18	74980809	rs5376	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:31:27:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,28:32:29:1.00:2	0/1:0,44:31:44:1.00:2
chr18	76753063	rs2472643	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:32:5:0.600:2	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	76753491	rs7233194	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,17:27:47:0.362:2	./.	./.	./.
chr18	76754367	rs2927258	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,21:31:46:0.457:2	0/1:17,11:32:28:0.393:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	76754466	rs2472644	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,9:28:24:0.375:2	0/1:6,4:30:10:0.400:2	0/1:0,2:31:2:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,23:29:23:1.00:2	0/1:0,25:29:25:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,15:31:15:1.00:2
chr18	76754549	rs35578880	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,4:28:37:0.108:2	./.	./.	./.
chr18	76754584	rs139777889	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,21:31:36:0.583:2	./.	./.	./.	./.
chr18	76754871	rs2615613	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,13:30:25:0.520:2	0/1:5,12:32:17:0.706:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	76856508	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,56:32:129:0.434:2	./.	./.	./.	./.	./.
chr18	76856627	rs144519079	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,75:29:183:0.410:2
chr18	76870384	rs34938281	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr18	76870397	rs492657	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,14:31:34:0.412:2	./.	./.	./.	./.	0/1:24,25:31:49:0.510:2
chr18	76873288	rs34331564	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,21:34:52:0.404:2	0/1:13,17:33:30:0.567:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	77067000	rs3760541	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,23:29:45:0.511:2	0/1:11,15:28:26:0.577:2	./.	0/1:2,52:29:54:0.963:2	0/1:20,15:28:35:0.429:2	0/1:25,13:28:38:0.342:2	0/1:1,32:28:33:0.970:2	0/1:22,22:27:44:0.500:2	0/1:38,28:30:66:0.424:2	./.	./.
chr18	77067183	rs11664381	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,33:32:73:0.452:2	./.	./.
chr18	77089179	rs61737608	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:31:11:0.636:2	./.	./.	./.	./.	./.	./.	./.	./.
chr18	77090023	rs34286681	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,7:32:19:0.368:2	./.	./.	./.	./.	./.	./.	./.	./.
chr18	77096644	rs201591038	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,4:27:26:0.154:2	./.	0/1:5,3:24:8:0.375:2	0/1:24,15:20:40:0.385:2	0/1:25,15:23:40:0.375:2	0/1:42,10:24:52:0.192:2	0/1:36,21:20:57:0.368:2	0/1:45,19:25:64:0.297:2	0/1:28,8:26:36:0.222:2	0/1:19,11:23:30:0.367:2	0/1:20,9:26:30:0.310:2
chr18	77097360	rs585033	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,24:31:45:0.533:2	./.	./.	./.	./.	0/1:12,12:31:24:0.500:2
chr18	77134010	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:32:167:0.024:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	77170477	rs1051978	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,9:29:17:0.563:2	0/1:2,5:28:7:0.714:2
chr18	77171061	rs2230112	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,20:29:21:0.952:2	0/1:0,11:29:11:1.00:2	0/1:14,12:29:26:0.462:2	0/1:0,10:28:10:1.00:2	0/1:1,20:29:21:0.952:2	0/1:0,12:29:12:1.00:2	0/1:0,13:26:13:1.00:2	0/1:0,9:28:9:1.00:2
chr18	77171480	rs200663312	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,10:27:17:0.588:2	./.
chr18	77208922	rs25657	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,31:31:62:0.500:2	0/1:15,11:31:26:0.423:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	77211764	rs15350	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,24:29:49:0.490:2	./.	0/1:23,7:25:30:0.233:2	./.
chr18	77227476	rs25656	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,33:30:88:0.375:2	./.	./.	0/1:69,55:27:124:0.444:2	./.	0/1:43,38:28:81:0.469:2	0/1:56,37:28:93:0.398:2
chr18	77246406	rs754093	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,4:31:15:0.267:2	./.	0/1:0,10:31:10:1.00:2	./.	./.	./.	./.	0/1:3,3:32:6:0.500:2
chr18	77473086	rs599554	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,54:33:56:0.964:2	./.	./.	./.	0/1:36,33:32:69:0.478:2	./.	./.	./.
chr18	77473127	rs2279103	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:19,21:32:40:0.525:2	0/1:10,9:32:19:0.474:2	0/1:2,4:32:6:0.667:2	./.	./.	./.	./.	./.	0/1:37,29:33:66:0.439:2	0/1:21,17:31:38:0.447:2	0/1:0,58:32:58:1.00:2
chr18	77474798	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,8:29:16:0.500:2	./.
chr18	77474921	rs2126082	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,15:31:16:0.938:2	./.	./.	./.	0/1:11,5:31:16:0.313:2	./.	./.	./.
chr18	77475327	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:34:74:0.054:2	./.
chr18	77477859	rs142285723	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:32:50:0.080:2	./.	./.	./.	./.	./.
chr18	77513663	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:130,8:31:138:0.058:2	./.	./.	./.	./.	./.	./.	./.
chr18	77513721	rs626169	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,78:27:78:1.00:2	0/1:0,41:27:41:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,98:27:98:1.00:2	0/1:0,81:26:81:1.00:2	0/1:0,86:27:86:1.00:2	0/1:0,77:27:77:1.00:2	0/1:0,93:27:93:1.00:2	0/1:0,64:27:64:1.00:2	0/1:1,75:28:76:0.987:2	0/1:0,65:27:65:1.00:2
chr18	77659553	rs75339189	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,150:32:150:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr18	77659561	rs3744886	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,27:29:27:1.00:2	./.	./.	./.	0/1:1,119:30:120:0.992:2	0/1:47,90:30:137:0.657:2	0/1:34,78:30:112:0.696:2	./.	./.
chr18	77659590	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:31:96:0.042:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr18	77728135	rs2298645	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,74:33:74:1.00:2	0/1:0,41:31:41:1.00:2	./.	0/1:0,94:32:94:1.00:2	0/1:2,42:32:44:0.955:2	0/1:1,86:31:87:0.989:2	./.	./.	0/1:44,40:33:84:0.476:2	0/1:35,44:32:79:0.557:2	0/1:0,79:33:79:1.00:2
chr18	77805856	rs3744872	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,37:31:38:0.974:2	0/1:0,19:32:19:1.00:2	./.	./.	0/1:31,28:33:59:0.475:2	0/1:20,28:30:48:0.583:2	./.	./.	./.	0/1:18,28:32:46:0.609:2	0/1:37,18:32:55:0.327:2
chr18	77805949	rs3744873	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,26:31:44:0.591:2	0/1:19,24:30:43:0.558:2	./.	./.	./.	0/1:17,26:31:43:0.605:2	0/1:10,22:29:32:0.688:2	0/1:15,16:30:31:0.516:2
chr18	77891039	rs1064058	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:37,32:32:69:0.464:2	0/1:22,25:30:47:0.532:2	./.	./.	0/1:29,35:32:64:0.547:2	./.	./.	./.	./.	./.	0/1:53,53:31:107:0.500:2
chr18	77893585	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:33:134:0.030:2
chr18	77893683	rs1064059	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:59,34:30:93:0.366:2	0/1:33,29:30:62:0.468:2	./.	./.	0/1:63,42:29:105:0.400:2	./.	./.	./.	./.	./.	0/1:56,55:30:111:0.495:2
chr18	77894470	rs36083942	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,56:30:99:0.566:2	./.
chr18	77894844	rs3744877	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,41:31:89:0.461:2	0/1:34,23:32:57:0.404:2	0/1:6,6:28:12:0.500:2	0/1:3,131:31:135:0.978:2	0/1:48,56:30:104:0.538:2	./.	./.	0/1:73,90:32:163:0.552:2	0/1:101,70:32:171:0.409:2	0/1:0,86:31:86:1.00:2	0/1:84,48:31:132:0.364:2
chr18	77895192	rs3744878	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:28,27:31:55:0.491:2	0/1:16,17:32:33:0.515:2	./.	./.	0/1:35,35:30:70:0.500:2	./.	./.	./.	./.	./.	0/1:24,26:27:50:0.520:2
chr18	77896242	rs3826595	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,24:32:37:0.649:2	./.	./.	./.	0/1:23,24:31:47:0.511:2	./.	0/1:19,29:32:48:0.604:2	./.
chr18	77918221	rs2280349	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,7:31:17:0.412:2	./.
chr19	71983	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:105,10:30:115:0.087:2	0/1:54,9:32:63:0.143:2	./.	0/1:113,8:32:121:0.066:2	0/1:79,9:31:88:0.102:2	0/1:126,5:32:131:0.038:2	0/1:60,16:31:76:0.211:2	0/1:104,14:31:118:0.119:2	0/1:139,7:33:146:0.048:2	0/1:94,9:32:103:0.087:2	0/1:177,19:32:196:0.097:2
chr19	72018	.	G	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:84,26:33:112:0.236:2	0/1:58,11:33:70:0.159:2	0/1:9,3:33:12:0.250:2	0/1:81,22:33:103:0.214:2	0/1:70,18:31:88:0.205:2	0/1:105,23:31:128:0.180:2	0/1:40,26:32:66:0.394:2	0/1:63,31:32:94:0.330:2	0/1:128,20:33:148:0.135:2	0/1:79,19:31:98:0.194:2	0/1:148,36:32:184:0.196:2
chr19	72096	.	G	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:118,13:33:131:0.099:2	0/1:74,5:32:79:0.063:2	./.	0/1:143,6:31:149:0.040:2	0/1:92,12:31:104:0.115:2	0/1:153,6:31:159:0.038:2	0/1:54,7:33:61:0.115:2	0/1:118,5:32:123:0.041:2	./.	0/1:92,7:31:99:0.071:2	0/1:187,9:32:196:0.046:2
chr19	110858	.	A	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:153,30:28:184:0.164:2	0/1:165,31:29:197:0.158:2	0/1:100,23:30:123:0.187:2	./.	0/1:172,22:31:194:0.113:2	0/1:179,10:32:191:0.053:2	0/1:163,27:30:190:0.142:2	0/1:163,34:29:197:0.173:2	0/1:167,17:31:185:0.092:2	0/1:173,16:30:191:0.085:2	0/1:164,21:31:186:0.114:2
chr19	110957	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,27:32:197:0.137:2	./.	./.	./.
chr19	111016	rs200336441	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:174,19:33:193:0.098:2	0/1:170,27:33:197:0.137:2	0/1:164,12:32:176:0.068:2	0/1:186,11:34:197:0.056:2	0/1:171,26:34:197:0.132:2	0/1:184,10:33:194:0.052:2	./.	0/1:160,35:33:195:0.179:2	0/1:148,42:34:190:0.221:2	0/1:176,24:33:200:0.120:2	0/1:174,21:32:195:0.108:2
chr19	111041	.	A	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:188,7:34:196:0.036:2	0/1:189,7:30:196:0.036:2	0/1:189,10:32:199:0.050:2	./.	0/1:184,11:32:195:0.056:2	./.	0/1:190,6:34:196:0.031:2	0/1:180,13:35:193:0.067:2	./.	0/1:188,6:30:194:0.031:2	0/1:189,4:35:193:0.021:2
chr19	111084	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,9:32:198:0.046:2	./.	./.	./.	./.	./.	./.	./.
chr19	111157	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,12:33:196:0.061:2	./.	./.
chr19	111349	.	A	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,13:32:194:0.067:2	./.	0/1:176,21:33:197:0.107:2	0/1:162,29:32:191:0.152:2	./.	./.
chr19	111437	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,15:30:196:0.077:2	./.	./.	./.	./.	./.
chr19	111485	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:127,71:29:198:0.359:2	0/1:130,69:28:199:0.347:2	0/1:51,21:29:72:0.292:2	./.	0/1:170,25:27:196:0.128:2	0/1:176,23:29:199:0.116:2	0/1:143,53:30:196:0.270:2	0/1:154,44:29:198:0.222:2	0/1:161,35:31:196:0.179:2	0/1:163,36:29:199:0.181:2	0/1:169,27:30:196:0.138:2
chr19	111520	rs200392975	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,15:28:199:0.075:2	0/1:174,24:30:198:0.121:2	./.	./.	./.	./.
chr19	282753	rs1138439	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,11:32:24:0.458:2	0/1:11,13:31:24:0.542:2	./.	0/1:0,38:30:38:1.00:2	0/1:15,16:33:31:0.516:2	0/1:0,31:32:31:1.00:2	0/1:10,18:31:28:0.643:2
chr19	327182	rs7256086	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,54:31:83:0.651:2	./.	./.	./.	./.	./.	./.	./.
chr19	334474	rs11084956	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,31:28:64:0.484:2	./.	./.	./.	./.	./.	./.	./.
chr19	336102	rs35953308	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,77:32:183:0.423:2	0/1:59,68:33:127:0.535:2	./.	0/1:49,37:32:86:0.430:2
chr19	362283	rs3764656	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,54:31:119:0.454:2	./.	./.	./.	./.	./.
chr19	362284	rs200648375	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,47:32:97:0.485:2	./.	./.
chr19	367089	rs10422863	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,57:31:125:0.456:2	./.	./.	0/1:59,37:31:96:0.385:2	./.	./.	./.	./.
chr19	372661	rs2303810	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,54:30:114:0.474:2	./.	./.	./.	./.	./.	./.
chr19	374016	rs2303815	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:30:9:0.444:2	./.	./.	0/1:55,47:31:102:0.461:2	./.	./.	0/1:35,38:32:73:0.521:2	0/1:31,34:31:65:0.523:2	0/1:34,31:31:65:0.477:2
chr19	375779	rs61745664	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,8:30:38:0.211:2	./.	./.	./.	./.	./.	./.	./.
chr19	407228	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,28:31:47:0.596:2	./.	./.	./.	./.	./.	./.
chr19	407900	rs10411998	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,11:29:34:0.324:2	0/1:13,8:28:21:0.381:2	0/1:8,7:30:15:0.467:2	0/1:0,54:29:54:1.00:2	./.	0/1:0,44:30:44:1.00:2	0/1:0,17:29:17:1.00:2	./.	0/1:0,40:30:40:1.00:2	0/1:20,15:28:35:0.429:2	./.
chr19	422229	rs61750917	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,21:32:46:0.457:2	0/1:27,16:31:43:0.372:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	434718	rs61749991	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,8:32:17:0.471:2	./.	./.	./.
chr19	434779	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,36:32:52:0.692:2	./.	./.	./.	./.	./.	./.	./.
chr19	436239	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,39:33:85:0.459:2
chr19	436368	rs373650716	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,9:31:23:0.409:2	./.	./.	./.	./.	./.
chr19	436690	rs2066959	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,15:31:21:0.714:2	./.	./.	./.
chr19	440874	rs199803042	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,34:31:79:0.430:2	./.	./.	./.	./.
chr19	440882	rs113455631	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,23:28:72:0.319:2
chr19	440918	rs61754498	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,28:32:82:0.341:2
chr19	464207	rs74333855	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,10:31:16:0.625:2	./.	./.
chr19	464310	rs34551779	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,9:28:32:0.281:2	0/1:11,11:26:22:0.500:2	./.	./.	0/1:0,43:25:43:1.00:2	0/1:29,8:28:37:0.216:2	0/1:18,15:28:33:0.455:2	0/1:22,26:28:48:0.542:2	0/1:36,10:26:46:0.217:2	./.	./.
chr19	474688	rs75055948	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,9:31:19:0.474:2
chr19	498524	rs2302217	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:30:11:0.636:2	./.	./.	0/1:30,14:30:44:0.318:2	./.	0/1:25,11:29:36:0.306:2	0/1:16,7:31:23:0.304:2	0/1:0,24:29:24:1.00:2	./.
chr19	501701	rs71171990	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,8:29:48:0.167:2	0/1:23,6:28:29:0.207:2	0/1:59,9:28:68:0.132:2	./.	./.	0/1:53,5:31:58:0.086:2	./.	./.
chr19	501719	rs62130832	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,15:28:29:0.517:2	0/1:8,9:27:17:0.529:2	./.	0/1:35,9:30:45:0.205:2	0/1:11,16:30:27:0.593:2	0/1:41,19:26:60:0.317:2	./.	0/1:21,24:29:46:0.533:2	0/1:40,15:30:56:0.273:2	./.	0/1:10,22:30:32:0.688:2
chr19	501725	rs62130833	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,15:28:29:0.517:2	0/1:9,7:29:16:0.438:2	./.	0/1:37,7:31:44:0.159:2	0/1:13,12:30:25:0.480:2	0/1:42,18:25:61:0.300:2	./.	0/1:22,20:29:42:0.476:2	0/1:38,13:30:51:0.255:2	./.	0/1:10,17:30:27:0.630:2
chr19	501738	rs1063736	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,6:31:24:0.250:2	0/1:51,8:31:59:0.136:2	0/1:30,3:31:33:0.091:2	0/1:16,15:30:31:0.484:2	0/1:38,5:31:43:0.116:2	0/1:26,5:33:31:0.161:2	0/1:20,5:26:25:0.200:2
chr19	501743	rs1140822	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:26:16:0.375:2	./.	./.	0/1:15,7:30:22:0.318:2	0/1:38,11:28:49:0.224:2	./.	0/1:13,16:32:29:0.552:2	0/1:31,6:29:37:0.162:2	0/1:19,7:25:27:0.269:2	0/1:16,5:31:21:0.238:2
chr19	501762	rs200007467	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:27:42:0.095:2	./.	./.	./.	./.	0/1:10,4:25:14:0.286:2
chr19	501786	rs77264553	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,3:33:10:0.300:2	0/1:12,4:34:16:0.250:2	./.	./.	0/1:7,6:30:13:0.462:2	0/1:5,20:30:25:0.800:2	0/1:11,5:33:16:0.313:2	0/1:5,7:32:12:0.583:2	0/1:4,9:32:13:0.692:2	0/1:6,11:32:17:0.647:2	0/1:3,5:32:8:0.625:2
chr19	501900	rs3745925	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:31:7:0.571:2	0/1:12,7:31:19:0.368:2	./.	0/1:6,4:29:10:0.400:2	0/1:0,2:32:2:1.00:2	./.
chr19	504830	rs7246543	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,33:29:64:0.516:2	0/1:10,15:29:25:0.600:2	0/1:9,9:29:18:0.500:2	0/1:44,42:29:86:0.488:2	0/1:52,33:29:85:0.388:2	0/1:60,43:28:103:0.417:2	./.	0/1:34,36:28:70:0.514:2	./.	./.	0/1:0,41:28:41:1.00:2
chr19	507731	rs16990489	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,10:29:29:0.345:2	./.	./.	./.	./.	./.	./.	./.
chr19	518957	rs117112129	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr19	532066	rs6507	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,46:30:94:0.489:2	./.	./.	./.
chr19	544140	rs892209	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:14,13:32:27:0.481:2	0/1:9,3:30:12:0.250:2	0/1:2,5:32:7:0.714:2	./.	./.	0/1:25,38:32:63:0.603:2	./.	./.	./.	./.	./.
chr19	548612	rs114537924	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:43,33:31:76:0.434:2	0/1:13,22:32:35:0.629:2	0/1:8,5:31:13:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	549678	rs1599882	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,29:30:29:1.00:2	0/1:0,15:29:15:1.00:2	./.	0/1:0,51:30:51:1.00:2	0/1:0,54:28:54:1.00:2	0/1:0,57:29:57:1.00:2	0/1:0,25:28:25:1.00:2	0/1:0,40:29:40:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,35:27:35:1.00:2	0/1:0,27:27:27:1.00:2
chr19	579627	rs1803202	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,31:30:52:0.596:2	0/1:16,19:31:35:0.543:2	./.	./.	./.	0/1:53,50:30:103:0.485:2	0/1:34,40:31:74:0.541:2	0/1:42,53:29:95:0.558:2	./.	0/1:36,31:30:67:0.463:2	./.
chr19	580388	rs2229664	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:28:14:0.500:2	0/1:5,6:30:11:0.545:2	./.	./.	./.	0/1:28,15:29:43:0.349:2	0/1:18,16:28:34:0.471:2	0/1:31,25:27:56:0.446:2	./.	0/1:17,4:28:21:0.190:2	./.
chr19	580665	rs4682	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:14,17:30:31:0.548:2	0/1:18,9:30:27:0.333:2	./.	./.	0/1:39,38:30:77:0.494:2	./.	./.	./.	./.	./.	./.
chr19	582505	rs2072309	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:21,14:31:35:0.400:2	./.	./.	./.	0/1:42,46:31:88:0.523:2	./.	./.	./.	./.	./.	./.
chr19	603625	rs56342526	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:87,43:26:130:0.331:2	./.	./.	0/1:90,34:28:124:0.274:2	./.	./.	0/1:1,47:29:48:0.979:2
chr19	603634	rs56131056	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,41:28:129:0.318:2	./.	./.	0/1:89,34:28:123:0.276:2	./.	./.	0/1:1,56:31:57:0.982:2
chr19	603769	rs55659726	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,93:31:182:0.511:2	./.	./.	0/1:98,73:31:171:0.427:2	./.	./.	0/1:0,101:32:102:1.00:2
chr19	603826	rs56170955	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,63:31:133:0.474:2	./.	./.	0/1:59,43:31:102:0.422:2	./.	./.	0/1:0,63:31:63:1.00:2
chr19	603832	rs56180027	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,27:32:63:0.429:2	0/1:41,17:32:58:0.293:2	./.	0/1:58,60:31:118:0.508:2	0/1:66,62:31:128:0.484:2	0/1:59,42:31:101:0.416:2	./.	./.	./.	./.	./.
chr19	603874	rs55780677	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,35:30:74:0.473:2	./.	./.	0/1:53,36:32:89:0.404:2	./.	./.	0/1:0,49:32:49:1.00:2
chr19	605090	rs56279131	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,21:30:53:0.396:2	./.	./.
chr19	605171	rs12981860	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,19:33:55:0.345:2	0/1:17,15:32:32:0.469:2	0/1:0,22:33:22:1.00:2	0/1:34,57:33:91:0.626:2	./.	./.	./.	./.	0/1:0,72:33:72:1.00:2	0/1:32,31:33:63:0.492:2	./.
chr19	610273	rs34397648	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:57,27:31:84:0.321:2	0/1:33,14:30:47:0.298:2	./.	0/1:108,71:31:179:0.397:2	0/1:118,73:30:191:0.382:2	./.	0/1:119,78:31:197:0.396:2	./.	0/1:83,71:31:154:0.461:2	./.	./.
chr19	613281	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:31:58:0.069:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	613304	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:32:59:0.068:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	613307	rs2301778	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:55,4:33:59:0.068:2	./.	./.	0/1:41,57:32:98:0.582:2	0/1:53,65:32:118:0.551:2	./.	./.	0/1:2,121:32:123:0.984:2	./.	0/1:35,47:33:82:0.573:2	0/1:24,19:31:43:0.442:2
chr19	613898	rs1054786	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,4:27:10:0.400:2	./.	./.	0/1:4,3:29:7:0.429:2	0/1:15,4:29:19:0.211:2	./.	./.	0/1:0,19:29:19:1.00:2	0/1:10,3:30:13:0.231:2	./.	./.
chr19	615935	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,4:33:44:0.091:2	./.	./.	./.	./.	./.	./.
chr19	617614	rs41551212	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.	./.
chr19	619021	rs14155	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,10:30:16:0.625:2	0/1:77,67:28:144:0.465:2	0/1:97,62:30:159:0.390:2	./.	./.	0/1:1,160:29:161:0.994:2	0/1:56,48:29:104:0.462:2	0/1:47,41:29:88:0.466:2	0/1:44,34:28:78:0.436:2
chr19	619664	rs145738463	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:157,8:29:165:0.048:2	./.	./.	./.	./.	./.	./.
chr19	619703	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:153,11:32:164:0.067:2	./.	./.	./.	./.	0/1:73,4:33:78:0.052:2	./.
chr19	620409	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:29:41:0.100:2	./.
chr19	621063	rs76890343	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:33:10:0.500:2	./.	./.	./.	./.	./.	0/1:16,12:34:28:0.429:2	./.	./.
chr19	621070	rs77809401	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:30:11:0.545:2	./.	./.	./.	./.	./.	0/1:18,16:32:34:0.471:2	./.	./.
chr19	621712	rs2238547	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,6:33:17:0.353:2	./.	./.	./.	0/1:12,8:34:20:0.400:2	./.	./.
chr19	622336	rs2238549	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	./.
chr19	622838	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,22:30:44:0.500:2	./.	./.	./.	./.	./.	./.
chr19	623546	rs41553913	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,33:33:69:0.478:2	0/1:19,13:33:32:0.406:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	625198	rs1056766	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,47:33:107:0.439:2	0/1:28,28:32:56:0.500:2	0/1:11,11:32:22:0.500:2	0/1:90,77:32:167:0.461:2	0/1:117,73:31:190:0.384:2	./.	./.	0/1:111,84:32:195:0.431:2	0/1:78,85:32:163:0.521:2	0/1:88,66:31:154:0.429:2	0/1:89,65:32:154:0.422:2
chr19	629846	rs11550305	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,7:31:18:0.389:2	0/1:6,9:31:15:0.600:2	./.	./.	./.	./.	./.	./.	0/1:14,18:32:32:0.563:2	./.	./.
chr19	632915	rs12610885	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,5:28:6:0.833:2	./.
chr19	648173	rs2072104	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,50:30:123:0.407:2	./.	./.	0/1:32,29:30:61:0.475:2
chr19	651684	rs61754469	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:29:5:0.600:2	./.	./.
chr19	652238	rs11554788	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,11:31:24:0.458:2	./.	./.	0/1:1,20:32:21:0.952:2	0/1:13,15:30:28:0.536:2	0/1:18,12:32:30:0.400:2	0/1:2,31:31:33:0.939:2	0/1:20,14:33:34:0.412:2	./.	./.	./.
chr19	685833	rs56125026	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,39:32:39:1.00:2	./.
chr19	685837	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,4:30:28:0.143:2	./.	./.	./.	./.	./.	./.	./.
chr19	687035	rs150190105	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,167:31:167:1.00:2	./.
chr19	687142	rs8102982	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:31:19:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,21:32:21:1.00:2
chr19	691909	rs4375794	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:29:64:1.00:2	0/1:0,29:27:29:1.00:2	0/1:6,4:31:10:0.400:2	0/1:0,94:29:94:1.00:2	0/1:52,61:29:113:0.540:2	0/1:35,43:28:78:0.551:2	0/1:3,85:29:88:0.966:2	0/1:1,104:29:105:0.990:2	0/1:52,32:29:84:0.381:2	0/1:1,68:29:69:0.986:2	0/1:44,36:29:80:0.450:2
chr19	726200	rs10408458	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,18:28:37:0.486:2	0/1:10,23:30:33:0.697:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	731144	rs1050457	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,21:29:21:1.00:2	0/1:1,8:28:9:0.889:2	./.	0/1:30,17:30:47:0.362:2	0/1:41,34:30:75:0.453:2	0/1:0,27:30:27:1.00:2	./.	0/1:44,22:28:66:0.333:2	0/1:19,24:31:43:0.558:2	0/1:0,30:30:30:1.00:2	0/1:23,9:30:32:0.281:2
chr19	731176	rs76698799	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,11:29:17:0.647:2
chr19	731193	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,22:31:40:0.550:2	0/1:9,4:32:13:0.308:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	746409	rs2238567	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:32:16:0.375:2	./.	./.	./.	./.	./.	./.	./.
chr19	746712	rs10421265	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,13:31:13:1.00:2	0/1:0,4:31:4:1.00:2	./.	./.	./.	0/1:14,12:32:26:0.462:2	./.	0/1:6,3:31:9:0.333:2	0/1:13,16:33:29:0.552:2	./.	0/1:1,8:31:9:0.889:2
chr19	756985	rs8110536	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,58:31:116:0.500:2	./.	./.	./.	0/1:98,64:30:162:0.395:2	./.	./.	./.
chr19	757321	rs35869813	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,34:31:93:0.366:2	./.	./.	./.	./.
chr19	757399	rs3746172	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,14:28:39:0.368:2	./.	./.	./.	0/1:12,5:27:17:0.294:2	./.	./.	./.
chr19	757412	rs3746173	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,11:26:35:0.314:2	./.	./.	0/1:11,6:31:17:0.353:2	./.	./.	./.	./.
chr19	758639	rs138693251	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:29:86:0.047:2	./.	./.
chr19	763497	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:31:50:0.080:2	./.	./.	./.
chr19	799392	rs62131332	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,39:30:109:0.358:2	0/1:38,29:32:67:0.433:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	799403	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:30:129:0.031:2
chr19	804079	rs351981	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:13,17:28:30:0.567:2	0/1:7,5:32:12:0.417:2	./.	./.	0/1:36,19:30:55:0.345:2	./.	./.	./.	./.	./.	./.
chr19	804327	rs10420953	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,6:31:12:0.500:2	0/1:6,9:29:15:0.600:2	./.	./.	./.	./.	./.	./.	0/1:13,19:30:32:0.594:2	./.	./.
chr19	804396	rs3180287	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,9:30:31:0.290:2	./.	./.	0/1:22,6:31:28:0.214:2	./.	0/1:5,4:24:9:0.444:2
chr19	804612	rs4986235	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,4:29:13:0.308:2	0/1:0,6:31:6:1.00:2	./.	./.	./.	./.	./.	./.	0/1:11,13:32:24:0.542:2	./.	./.
chr19	804642	rs3170451	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,21:30:46:0.457:2	./.	./.	0/1:27,16:33:43:0.372:2	./.	0/1:17,14:32:31:0.452:2
chr19	808586	rs13169	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,15:26:39:0.385:2	./.	./.	0/1:13,11:22:24:0.458:2	./.	0/1:15,7:26:22:0.318:2
chr19	808742	rs1135908	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,31:31:68:0.456:2	./.	./.	0/1:47,28:32:75:0.373:2	./.	0/1:25,27:30:52:0.519:2
chr19	810573	rs11549883	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,32:29:62:0.516:2	./.	./.
chr19	813220	rs351994	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.
chr19	814680	rs56944467	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,5:32:12:0.417:2	./.	0/1:4,5:31:9:0.556:2
chr19	814907	rs1540615	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:22,11:29:33:0.333:2	0/1:18,7:31:25:0.280:2	./.	./.	0/1:60,29:32:89:0.326:2	./.	./.	./.	./.	./.	./.
chr19	827891	rs34124897	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,9:30:21:0.429:2	./.
chr19	829568	rs12460890	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,14:32:31:0.452:2	./.	0/1:15,20:32:35:0.571:2	0/1:33,3:31:36:0.083:2	0/1:23,29:33:52:0.558:2	0/1:0,22:34:22:1.00:2	0/1:5,10:33:15:0.667:2	0/1:18,16:33:34:0.471:2
chr19	830820	rs28626600	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,6:31:10:0.600:2	0/1:3,14:31:17:0.824:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	830841	rs61732996	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,9:28:21:0.429:2	./.	./.	./.	./.	./.	./.
chr19	830854	rs595844	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,13:29:13:1.00:2	0/1:0,12:30:12:1.00:2	./.	0/1:15,13:28:28:0.464:2	0/1:14,14:30:28:0.500:2	0/1:0,35:29:35:1.00:2	0/1:12,10:30:22:0.455:2	0/1:24,8:30:32:0.250:2	0/1:0,22:30:22:1.00:2	0/1:9,11:28:20:0.550:2	0/1:15,12:26:27:0.444:2
chr19	843971	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:32:124:0.032:2	./.
chr19	844020	rs351111	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,43:30:90:0.478:2	0/1:19,19:31:38:0.500:2	0/1:5,7:31:12:0.583:2	0/1:79,50:30:129:0.388:2	0/1:57,28:30:85:0.329:2	./.	./.	./.	0/1:58,45:30:103:0.437:2	./.	0/1:46,49:32:95:0.516:2
chr19	855966	rs17216649	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,12:31:27:0.444:2	0/1:8,6:29:14:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	856130	rs17216663	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,18:29:27:0.667:2	./.
chr19	868108	rs147510499	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,11:34:30:0.367:2	./.	./.
chr19	868115	rs13090	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:31:3:0.667:2	0/1:16,24:30:40:0.600:2	0/1:14,19:30:33:0.576:2	./.	0/1:1,33:30:34:0.971:2	0/1:12,21:30:33:0.636:2	0/1:0,31:31:31:1.00:2	0/1:10,15:31:25:0.600:2	0/1:15,11:29:26:0.423:2
chr19	871135	rs1683569	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:31:5:1.00:2	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.	./.	./.
chr19	871222	rs8100258	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,3:32:12:0.250:2	0/1:6,7:31:13:0.538:2	./.	./.	0/1:7,11:32:18:0.611:2	0/1:11,16:30:27:0.593:2	./.	./.	./.	./.	0/1:5,8:31:13:0.615:2
chr19	871987	rs78047294	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,37:31:93:0.398:2	./.	0/1:53,46:32:99:0.465:2	0/1:74,52:32:126:0.413:2	0/1:0,66:33:66:1.00:2	./.	0/1:19,23:31:42:0.548:2
chr19	872089	rs72984031	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:16,14:32:30:0.467:2	0/1:11,13:32:24:0.542:2	0/1:0,3:32:3:1.00:2	./.	0/1:39,29:31:68:0.426:2	0/1:41,15:32:56:0.268:2	./.	./.	./.	./.	0/1:1,52:32:53:0.981:2
chr19	875380	rs111940149	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,14:32:34:0.412:2	./.	./.
chr19	875389	rs11546307	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,40:31:59:0.678:2	./.	0/1:22,20:32:42:0.476:2	0/1:23,34:31:57:0.596:2	0/1:0,29:33:29:1.00:2	./.	0/1:14,12:32:26:0.462:2
chr19	880066	rs34799086	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,15:31:31:0.484:2	./.	./.	./.	./.	./.
chr19	884994	rs117962128	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,22:31:31:0.710:2	./.	./.	./.	./.	./.	./.
chr19	885818	rs1060442	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:13,13:30:26:0.500:2	0/1:3,8:29:11:0.727:2	0/1:0,8:31:8:1.00:2	./.	0/1:0,99:31:99:1.00:2	0/1:0,70:32:70:1.00:2	0/1:39,34:30:73:0.466:2	0/1:29,24:31:53:0.453:2	0/1:0,51:33:51:1.00:2	./.	0/1:20,12:32:32:0.375:2
chr19	890165	rs6678	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,31:30:60:0.517:2	./.	0/1:32,31:31:63:0.492:2	0/1:38,45:30:83:0.542:2	0/1:0,58:31:58:1.00:2	./.	0/1:24,16:31:40:0.400:2
chr19	891125	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:31:107:0.037:2	./.	./.	./.
chr19	899444	rs2965284	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,32:32:57:0.561:2	0/1:2,129:32:131:0.985:2	./.	0/1:25,24:33:49:0.490:2	0/1:29,29:32:58:0.500:2	0/1:49,19:32:68:0.279:2
chr19	929678	rs3826948	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	0/1:0,3:30:3:1.00:2
chr19	932694	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:31:8:0.500:2	./.
chr19	965043	rs12608658	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:28:32:1.00:2	0/1:0,8:27:8:1.00:2	0/1:0,4:29:4:1.00:2	0/1:0,19:27:19:1.00:2	0/1:0,29:29:29:1.00:2	0/1:0,21:28:21:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,28:28:28:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,23:28:23:1.00:2	0/1:0,23:28:23:1.00:2
chr19	966693	rs6510986	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,14:32:14:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,19:33:19:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,23:31:23:1.00:2
chr19	971933	rs1051504	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,2:34:2:1.00:2	./.	0/1:0,2:31:2:1.00:2	0/1:1,3:31:4:0.750:2	0/1:0,3:28:3:1.00:2	./.	0/1:0,2:32:2:1.00:2	0/1:0,5:33:5:1.00:2	./.	0/1:0,2:34:2:1.00:2
chr19	971949	rs1051505	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	0/1:0,4:28:4:1.00:2	./.	./.	0/1:0,2:34:2:1.00:2	0/1:0,2:33:2:1.00:2	./.
chr19	984533	rs2301810	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,2:33:3:0.667:2	0/1:0,3:33:3:1.00:2	./.	0/1:0,10:31:10:1.00:2	./.	./.	./.	0/1:0,12:31:12:1.00:2	./.	./.	./.
chr19	984537	rs61732720	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,9:29:11:0.818:2	0/1:0,2:33:2:1.00:2	./.	./.	0/1:0,5:31:5:1.00:2	./.
chr19	984554	rs4806884	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:1,3:32:4:0.750:2	./.	0/1:0,6:33:6:1.00:2	./.	./.	./.	0/1:0,8:31:8:1.00:2	./.	./.	./.
chr19	990238	rs117300378	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	./.	./.	./.	0/1:3,3:28:6:0.500:2	./.	./.	./.	./.	./.
chr19	990281	rs2158367	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,9:30:9:1.00:2	0/1:2,6:31:8:0.750:2	0/1:0,4:30:4:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,9:28:9:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,13:31:14:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,9:30:9:1.00:2
chr19	991063	rs2240150	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:33:10:0.500:2	./.	./.	./.	0/1:9,9:32:18:0.500:2	0/1:9,9:33:18:0.500:2	0/1:2,4:31:6:0.667:2	./.	./.	0/1:10,4:27:14:0.286:2	./.
chr19	991129	rs11538683	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,13:32:18:0.722:2	./.	./.	./.	0/1:11,14:31:25:0.560:2	0/1:16,17:31:33:0.515:2	0/1:7,9:32:16:0.563:2	./.	./.	0/1:17,6:31:23:0.261:2	./.
chr19	991968	rs1127043	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	0/1:5,4:26:9:0.444:2	0/1:0,3:29:3:1.00:2	./.	./.	./.	./.
chr19	994060	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,4:33:40:0.100:2	./.	./.	./.	./.	./.	./.
chr19	1003158	rs35163060	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,13:31:28:0.464:2	./.	./.
chr19	1003162	rs113181909	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,24:30:35:0.686:2
chr19	1003172	rs2240154	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:13,16:31:29:0.552:2	0/1:12,8:31:20:0.400:2	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	1004710	rs4807399	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,3:30:8:0.375:2	./.	./.	0/1:10,3:31:13:0.231:2	0/1:8,5:31:13:0.385:2	0/1:0,12:29:12:1.00:2	0/1:7,4:32:11:0.364:2	0/1:3,4:29:7:0.571:2	./.	0/1:0,8:31:8:1.00:2	0/1:2,3:28:5:0.600:2
chr19	1004724	rs11880849	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,8:26:21:0.381:2	./.	0/1:17,5:24:22:0.227:2	./.	0/1:9,7:27:16:0.438:2	./.	0/1:10,5:25:15:0.333:2	0/1:3,4:25:7:0.571:2
chr19	1004740	rs2240157	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,3:32:13:0.231:2	./.	./.	0/1:20,8:30:28:0.286:2	0/1:17,16:31:33:0.485:2	0/1:0,33:31:33:1.00:2	0/1:4,26:30:30:0.867:2	0/1:10,11:29:21:0.524:2	0/1:10,7:32:17:0.412:2	0/1:0,20:30:20:1.00:2	0/1:0,11:32:11:1.00:2
chr19	1004808	rs61736783	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,7:29:26:0.269:2	0/1:8,3:26:11:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	1004823	rs4806908	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,12:32:43:0.279:2	./.	0/1:26,24:32:50:0.480:2	./.	0/1:31,11:30:42:0.262:2	0/1:9,18:34:27:0.667:2	0/1:20,8:32:28:0.286:2	0/1:13,16:32:29:0.552:2
chr19	1004844	rs4806909	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,10:28:34:0.294:2	./.	0/1:20,16:28:36:0.444:2	./.	0/1:28,6:22:34:0.176:2	0/1:9,10:28:19:0.526:2	0/1:17,4:27:21:0.190:2	0/1:7,12:29:19:0.632:2
chr19	1005230	rs2240158	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,22:31:48:0.458:2	./.	0/1:22,40:30:62:0.645:2	./.	0/1:19,19:31:39:0.500:2	0/1:17,17:33:34:0.500:2	0/1:21,20:32:41:0.488:2	0/1:10,13:32:23:0.565:2
chr19	1005531	rs12973948	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,31:33:82:0.378:2	./.	0/1:27,25:32:52:0.481:2	./.	0/1:29,33:32:62:0.532:2	0/1:34,23:32:57:0.404:2	0/1:31,15:31:46:0.326:2	0/1:18,20:31:38:0.526:2
chr19	1008645	rs78914045	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,13:33:32:0.406:2	./.	./.	./.
chr19	1008683	rs2285906	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,4:30:10:0.400:2	./.	./.	./.	./.
chr19	1008879	rs2285907	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:16,18:30:34:0.529:2	0/1:17,6:29:23:0.261:2	./.	./.	./.	./.	0/1:27,17:30:44:0.386:2	./.	./.	./.	0/1:28,13:30:41:0.317:2
chr19	1009585	rs10401454	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,7:27:8:0.875:2	0/1:0,2:31:2:1.00:2	./.	./.	0/1:0,3:29:3:1.00:2	./.
chr19	1010406	rs62131162	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.
chr19	1010691	rs2240159	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.
chr19	1011424	rs199888865	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,4:29:78:0.051:2	./.	./.	./.	0/1:98,7:21:105:0.067:2	./.	./.	0/1:57,4:26:61:0.066:2
chr19	1012120	rs7145	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,55:31:95:0.579:2	0/1:84,62:32:146:0.425:2	./.	./.	0/1:47,25:33:72:0.347:2	./.
chr19	1014377	rs1058506	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,30:27:86:0.349:2	0/1:50,25:27:75:0.333:2	./.	./.	0/1:32,29:27:61:0.475:2	0/1:24,16:26:40:0.400:2
chr19	1014398	rs7146	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,32:30:74:0.432:2	0/1:30,32:30:62:0.516:2	./.	0/1:64,66:29:130:0.508:2	0/1:110,86:29:196:0.439:2	0/1:79,46:28:125:0.368:2	0/1:3,123:29:126:0.976:2	0/1:73,70:28:143:0.490:2	0/1:57,48:30:105:0.457:2	0/1:0,83:28:83:1.00:2	0/1:0,49:28:49:1.00:2
chr19	1032474	rs62131196	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,24:29:58:0.414:2	0/1:17,28:31:45:0.622:2	./.	./.	0/1:19,35:31:54:0.648:2	./.
chr19	1032689	rs1141534	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	0/1:26,14:32:40:0.350:2	./.	0/1:15,10:29:26:0.400:2	./.	./.	./.	0/1:17,17:33:34:0.500:2
chr19	1036444	rs930231	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,56:32:101:0.554:2	0/1:77,90:32:167:0.539:2	./.	./.	0/1:71,87:32:158:0.551:2	0/1:49,74:33:123:0.602:2	0/1:60,36:31:96:0.375:2	0/1:39,57:32:96:0.594:2
chr19	1036456	rs1064410	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:40,32:29:72:0.444:2	0/1:29,13:29:42:0.310:2	./.	./.	0/1:93,73:29:166:0.440:2	./.	0/1:93,78:29:171:0.456:2	./.	./.	./.	./.
chr19	1036468	rs1064411	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:37,28:31:65:0.431:2	0/1:25,12:32:37:0.324:2	./.	./.	0/1:85,68:32:153:0.444:2	./.	0/1:84,68:32:152:0.447:2	./.	./.	./.	./.
chr19	1036552	rs2304262	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:26:46:1.00:2	0/1:1,20:27:21:0.952:2	0/1:0,5:25:5:1.00:2	0/1:0,39:26:39:1.00:2	0/1:0,44:25:44:1.00:2	0/1:33,23:26:56:0.411:2	0/1:2,36:25:38:0.947:2	0/1:47,24:27:71:0.338:2	0/1:29,28:27:57:0.491:2	0/1:0,38:27:38:1.00:2	0/1:0,31:25:31:1.00:2
chr19	1042164	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	1042809	rs3764645	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,8:32:24:0.333:2	0/1:3,3:32:6:0.500:2	./.	0/1:0,16:33:16:1.00:2	0/1:3,6:30:9:0.667:2	./.	./.	0/1:13,8:32:21:0.381:2	0/1:7,9:32:16:0.563:2	./.	0/1:10,16:32:26:0.615:2
chr19	1043096	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,4:30:90:0.044:2	./.	./.	./.	./.	./.	./.
chr19	1043103	rs72973581	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,52:33:103:0.505:2	./.	0/1:32,55:32:87:0.632:2
chr19	1047002	rs3752234	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:3,3:28:6:0.500:2	./.	0/1:0,7:27:7:1.00:2	./.	./.	0/1:2,4:30:6:0.667:2	./.	./.	./.	0/1:8,4:31:12:0.333:2
chr19	1047161	rs3752237	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,9:31:17:0.529:2	0/1:4,12:32:16:0.750:2	./.	0/1:0,41:32:41:1.00:2	0/1:33,25:32:58:0.431:2	./.	0/1:31,24:31:55:0.436:2	0/1:22,29:32:51:0.569:2	0/1:23,18:33:41:0.439:2	./.	0/1:12,9:33:21:0.429:2
chr19	1048982	rs9282560	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,12:30:36:0.333:2	./.	./.	./.	./.	./.	./.	./.
chr19	1049305	rs4147915	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:32,28:28:60:0.467:2	0/1:12,17:29:29:0.586:2	./.	0/1:44,31:29:75:0.413:2	./.	./.	./.	./.	./.	./.	./.
chr19	1051214	rs3752240	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,32:30:61:0.525:2	0/1:13,16:33:29:0.552:2	./.	0/1:38,47:33:85:0.553:2	0/1:71,64:32:135:0.474:2	./.	./.	0/1:71,63:32:134:0.470:2	0/1:37,46:34:83:0.554:2	./.	0/1:22,16:33:38:0.421:2
chr19	1051257	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:33:52:0.077:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	1052005	rs3764652	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,32:32:63:0.508:2	0/1:24,14:33:38:0.368:2	0/1:0,17:32:17:1.00:2	0/1:39,57:32:96:0.594:2	./.	0/1:59,47:31:106:0.443:2	0/1:0,72:32:72:1.00:2	./.	./.	0/1:0,46:32:46:1.00:2	0/1:15,16:34:31:0.516:2
chr19	1053524	rs3752241	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,12:32:22:0.545:2	0/1:8,15:30:23:0.652:2	./.	./.	./.	./.
chr19	1054060	rs3752243	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,22:33:58:0.379:2	0/1:18,14:31:32:0.438:2	0/1:0,8:31:8:1.00:2	0/1:48,40:33:88:0.455:2	./.	0/1:53,41:32:94:0.436:2	0/1:2,116:32:118:0.983:2	./.	./.	0/1:0,53:33:53:1.00:2	0/1:64,27:32:91:0.297:2
chr19	1055191	rs3745842	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:8,10:32:18:0.556:2	0/1:1,2:32:3:0.667:2	./.	0/1:13,12:32:25:0.480:2	./.	0/1:14,13:31:27:0.481:2	0/1:1,26:31:27:0.963:2	./.	./.	0/1:3,5:33:8:0.625:2	0/1:8,13:30:21:0.619:2
chr19	1056065	rs881768	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:4,10:31:14:0.714:2	0/1:2,3:31:5:0.600:2	./.	0/1:6,5:31:11:0.455:2	./.	0/1:11,10:31:21:0.476:2	0/1:0,4:32:4:1.00:2	./.	./.	0/1:9,7:31:16:0.438:2	0/1:4,3:33:7:0.429:2
chr19	1056492	rs3752246	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:33:52:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,79:32:79:1.00:2	0/1:87,59:32:147:0.404:2	0/1:41,41:32:82:0.500:2	0/1:0,115:32:115:1.00:2	0/1:61,56:33:117:0.479:2	0/1:50,43:33:93:0.462:2	0/1:32,25:33:57:0.439:2	0/1:1,55:31:56:0.982:2
chr19	1059004	rs2279796	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,27:32:58:0.466:2	0/1:13,11:32:24:0.458:2	0/1:0,6:30:6:1.00:2	0/1:35,35:33:70:0.500:2	./.	0/1:45,43:32:88:0.489:2	0/1:0,103:33:103:1.00:2	./.	./.	0/1:0,61:31:61:1.00:2	0/1:47,22:32:70:0.319:2
chr19	1064193	rs4147930	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:30:51:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,4:24:4:1.00:2	0/1:0,68:29:68:1.00:2	0/1:32,44:29:76:0.579:2	0/1:28,53:29:81:0.654:2	0/1:1,79:30:80:0.988:2	0/1:50,55:30:105:0.524:2	0/1:31,46:30:77:0.597:2	0/1:0,42:28:42:1.00:2	0/1:2,34:31:36:0.944:2
chr19	1068734	rs3764653	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:96,65:32:161:0.404:2	0/1:61,25:32:86:0.291:2	0/1:0,19:33:19:1.00:2	0/1:98,52:32:150:0.347:2	./.	0/1:92,61:32:153:0.399:2	0/1:2,170:31:172:0.988:2	./.	./.	0/1:119,54:32:173:0.312:2	./.
chr19	1068738	rs1801284	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:97,64:32:161:0.398:2	0/1:60,25:31:85:0.294:2	0/1:0,18:31:18:1.00:2	0/1:96,48:30:144:0.333:2	./.	0/1:94,60:31:155:0.390:2	0/1:2,167:30:169:0.988:2	./.	./.	0/1:123,53:32:176:0.301:2	./.
chr19	1073750	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,4:31:28:0.143:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	1074000	rs2074442	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:32:18:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,20:30:20:1.00:2	0/1:20,13:31:33:0.394:2	0/1:21,9:31:30:0.300:2	0/1:0,21:30:21:1.00:2	0/1:12,22:31:34:0.647:2	0/1:17,13:31:30:0.433:2	0/1:0,16:32:16:1.00:2	0/1:10,12:31:22:0.545:2
chr19	1074334	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,3:34:69:0.043:2	./.	./.
chr19	1077936	rs35964792	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,16:31:27:0.593:2	0/1:10,13:31:23:0.565:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	1077985	rs7251797	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:31:2:1.00:2	0/1:12,8:27:20:0.400:2	./.	0/1:6,10:27:16:0.625:2	0/1:0,10:26:10:1.00:2	./.	./.	0/1:14,5:26:19:0.263:2	./.
chr19	1079959	rs36084354	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,29:30:66:0.439:2	0/1:25,25:30:50:0.500:2	./.	./.	./.	./.	./.
chr19	1080311	rs2074454	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:25:20:1.00:2	0/1:0,12:27:12:1.00:2	0/1:0,6:28:6:1.00:2	0/1:0,32:27:32:1.00:2	0/1:5,12:25:17:0.706:2	0/1:23,12:27:35:0.343:2	0/1:0,21:27:21:1.00:2	0/1:12,18:25:30:0.600:2	0/1:8,19:27:27:0.704:2	0/1:0,28:28:28:1.00:2	0/1:10,5:27:15:0.333:2
chr19	1080925	rs11551696	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:31:5:0.800:2	./.	./.	./.	./.
chr19	1081617	rs10404947	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,3:32:3:1.00:2	0/1:0,5:32:5:1.00:2	./.	0/1:0,12:32:12:1.00:2	./.	0/1:7,5:33:12:0.417:2	0/1:0,8:33:8:1.00:2	0/1:10,4:29:14:0.286:2	0/1:3,4:33:7:0.571:2	0/1:0,4:33:4:1.00:2	./.
chr19	1085966	rs3761028	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:30:25:1.00:2	0/1:0,18:28:18:1.00:2	0/1:0,4:31:4:1.00:2	0/1:27,18:30:45:0.400:2	0/1:24,17:32:41:0.415:2	0/1:22,20:32:43:0.476:2	0/1:2,23:30:25:0.920:2	0/1:31,22:32:53:0.415:2	0/1:1,32:31:33:0.970:2	0/1:22,13:28:35:0.371:2	0/1:12,7:32:19:0.368:2
chr19	1085993	rs34721728	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,12:31:24:0.500:2	0/1:9,7:32:17:0.438:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	1089492	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:141,11:16:152:0.072:2	./.	./.	./.	./.	./.	./.
chr19	1094004	rs12459404	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:30:44:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,12:29:12:1.00:2	0/1:0,104:29:104:1.00:2	0/1:0,92:28:92:1.00:2	0/1:0,75:29:75:1.00:2	0/1:0,69:29:69:1.00:2	0/1:0,104:29:104:1.00:2	0/1:0,91:29:91:1.00:2	0/1:0,89:29:89:1.00:2	0/1:0,55:29:55:1.00:2
chr19	1095334	rs371018866	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,32:29:75:0.432:2	./.	./.	./.
chr19	1095336	rs1046041	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,12:30:12:1.00:2	0/1:32,19:30:51:0.373:2	0/1:40,47:31:87:0.540:2	0/1:0,50:31:50:1.00:2	./.	0/1:39,33:31:72:0.458:2	0/1:8,19:32:27:0.704:2	0/1:20,20:30:40:0.500:2	./.
chr19	1104874	rs117193629	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:32:13:0.538:2	./.	./.	./.	0/1:6,9:32:15:0.600:2	./.	./.	./.
chr19	1106615	rs713041	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,16:27:16:1.00:2	0/1:0,10:26:10:1.00:2	./.	0/1:2,34:28:36:0.944:2	./.	0/1:13,11:27:24:0.458:2	./.	0/1:7,15:26:22:0.682:2	0/1:18,8:25:26:0.308:2	0/1:5,14:28:19:0.737:2	./.
chr19	1109213	rs2159133	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:7,10:33:17:0.588:2	0/1:1,4:33:5:0.800:2	./.	0/1:0,9:33:9:1.00:2	./.	0/1:18,9:33:27:0.333:2	./.	0/1:15,7:32:22:0.318:2	0/1:19,6:34:25:0.240:2	0/1:20,6:32:26:0.231:2	./.
chr19	1109215	rs11669443	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,6:33:26:0.231:2	./.
chr19	1110829	rs2302109	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,60:31:122:0.492:2	0/1:25,34:32:59:0.576:2	0/1:5,10:31:15:0.667:2	0/1:1,176:31:177:0.994:2	./.	0/1:85,91:30:177:0.517:2	./.	0/1:93,86:31:179:0.480:2	0/1:98,84:32:183:0.462:2	0/1:98,65:31:163:0.399:2	./.
chr19	1113701	rs2302110	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,21:31:39:0.553:2	0/1:14,10:31:24:0.417:2	0/1:2,4:25:6:0.667:2	0/1:0,65:31:65:1.00:2	./.	./.	./.	0/1:19,41:31:60:0.683:2	0/1:25,29:32:54:0.537:2	./.	./.
chr19	1116842	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,27:31:52:0.519:2	./.	./.	./.	./.	./.	./.
chr19	1119019	rs2074920	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,4:33:10:0.400:2	0/1:2,4:32:6:0.667:2	0/1:1,2:33:3:0.667:2	0/1:2,12:32:14:0.857:2	./.	0/1:6,12:32:18:0.667:2	./.	0/1:3,11:32:14:0.786:2	0/1:8,8:32:16:0.500:2	./.	./.
chr19	1119963	rs2074921	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,22:28:51:0.431:2	0/1:17,24:28:41:0.585:2	0/1:2,4:30:6:0.667:2	0/1:3,70:29:73:0.959:2	./.	0/1:44,48:29:92:0.522:2	./.	0/1:81,54:28:135:0.400:2	0/1:43,52:29:95:0.547:2	0/1:35,40:28:75:0.533:2	./.
chr19	1122147	rs2072280	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:17,21:32:38:0.553:2	0/1:11,11:31:22:0.500:2	./.	0/1:0,27:31:27:1.00:2	./.	0/1:15,12:31:27:0.444:2	./.	0/1:14,16:31:30:0.533:2	0/1:12,12:32:24:0.500:2	0/1:6,8:32:14:0.571:2	./.
chr19	1122201	rs62131221	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	./.	./.	./.	./.	0/1:22,30:32:52:0.577:2	./.	./.
chr19	1124031	rs2024092	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,43:31:82:0.524:2	./.	./.	./.	0/1:37,23:31:60:0.383:2	./.
chr19	1127615	rs2074915	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,16:29:36:0.444:2	./.	./.	./.	0/1:10,13:30:23:0.565:2	./.
chr19	1127720	rs2074916	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,39:32:106:0.368:2	./.	./.	./.	0/1:39,32:31:71:0.451:2	./.
chr19	1149406	rs184544671	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,36:29:72:0.500:2	./.	./.	./.	./.	./.
chr19	1207176	rs56354945	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,61:28:132:0.462:2	./.	./.	./.	./.	./.	./.	./.
chr19	1222012	rs2075607	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,12:28:14:0.857:2	./.	./.	./.	./.	0/1:11,11:25:22:0.500:2	./.	./.	./.	0/1:11,5:28:16:0.313:2	./.
chr19	1231142	rs8110590	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:28:3:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr19	1233597	rs3746102	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,11:31:20:0.550:2	./.	./.	./.	0/1:7,9:33:16:0.563:2	./.
chr19	1235487	rs3213645	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,38:30:82:0.463:2	./.
chr19	1251821	rs201839842	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,32:29:77:0.416:2	./.	./.	./.	./.	./.
chr19	1256998	rs9823	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:4,4:33:8:0.500:2	0/1:2,3:33:5:0.600:2	./.	0/1:4,6:30:10:0.600:2	./.	./.	./.	./.	0/1:2,8:33:10:0.800:2	./.	0/1:5,5:28:10:0.500:2
chr19	1272040	rs12488	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,54:27:113:0.478:2	0/1:46,30:28:76:0.395:2	0/1:16,9:31:25:0.360:2	0/1:52,58:28:110:0.527:2	0/1:0,192:28:192:1.00:2	0/1:2,155:28:157:0.987:2	0/1:0,187:27:188:1.00:2	0/1:0,170:28:170:1.00:2	0/1:0,121:29:121:1.00:2	0/1:51,51:28:102:0.500:2	0/1:47,57:27:104:0.548:2
chr19	1277275	rs757292	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,31:32:64:0.484:2	0/1:17,9:32:26:0.346:2	./.	0/1:95,50:33:145:0.345:2	0/1:0,139:32:139:1.00:2	0/1:0,121:31:121:1.00:2	0/1:0,128:32:128:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,95:32:95:1.00:2	0/1:63,33:31:96:0.344:2	0/1:47,26:31:73:0.356:2
chr19	1278861	rs12460305	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,67:30:107:0.626:2	./.	./.	./.
chr19	1357082	rs713042	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,38:33:81:0.469:2	0/1:23,23:32:46:0.500:2	0/1:2,8:31:10:0.800:2	0/1:0,68:32:68:1.00:2	0/1:1,47:32:48:0.979:2	0/1:38,34:33:72:0.472:2	0/1:28,15:31:43:0.349:2	0/1:0,58:32:58:1.00:2	0/1:0,74:33:74:1.00:2	0/1:33,35:33:68:0.515:2	0/1:72,64:32:136:0.471:2
chr19	1360575	rs3826942	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,17:31:49:0.347:2	0/1:22,5:32:27:0.185:2	0/1:6,3:32:9:0.333:2	0/1:0,57:32:57:1.00:2	./.	0/1:49,28:31:77:0.364:2	0/1:2,71:32:73:0.973:2	0/1:0,64:32:64:1.00:2	0/1:0,79:32:79:1.00:2	0/1:24,21:31:45:0.467:2	0/1:19,33:31:52:0.635:2
chr19	1367226	rs11668809	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,48:30:130:0.369:2	./.	./.	./.	./.
chr19	1369303	rs200602825	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:140,16:13:157:0.103:2	./.	./.	./.	./.	./.	./.	./.
chr19	1370675	rs12608765	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,35:32:75:0.467:2	0/1:22,14:31:36:0.389:2	0/1:6,10:31:16:0.625:2	0/1:0,77:32:77:1.00:2	./.	0/1:39,56:31:95:0.589:2	0/1:68,33:32:103:0.327:2	0/1:0,79:31:79:1.00:2	0/1:41,49:33:91:0.544:2	0/1:45,35:32:80:0.438:2	0/1:54,40:31:94:0.426:2
chr19	1388538	rs1142530	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,31:32:55:0.564:2	0/1:16,20:32:36:0.556:2	0/1:2,5:31:7:0.714:2	0/1:1,70:32:71:0.986:2	./.	0/1:25,49:32:74:0.662:2	0/1:0,33:31:33:1.00:2	0/1:12,49:31:61:0.803:2	0/1:18,31:32:49:0.633:2	0/1:22,15:32:37:0.405:2	0/1:11,5:32:16:0.313:2
chr19	1397443	rs17851582	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,25:28:38:0.658:2	./.	./.	./.	./.
chr19	1399153	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:33:171:0.023:2	./.	./.	./.	./.
chr19	1430261	rs142458886	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,10:19:38:0.263:2	0/1:27,6:23:33:0.182:2	./.	./.	./.
chr19	1432577	.	A	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,7:22:56:0.125:2	./.	./.	0/1:62,12:20:74:0.162:2	0/1:49,12:12:61:0.197:2	0/1:38,13:17:51:0.255:2	./.	0/1:50,18:16:68:0.265:2	./.	0/1:53,11:23:64:0.172:2	0/1:34,9:18:43:0.209:2
chr19	1440068	rs201657403	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.
chr19	1440407	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:31:105:0.038:2	./.	./.	./.
chr19	1460193	rs34953512	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,57:33:99:0.576:2
chr19	1482034	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,4:27:28:0.143:2	./.	./.	./.	./.	./.	./.	./.
chr19	1482396	rs61733913	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,14:30:25:0.560:2	./.	./.	./.	./.	./.	./.	./.
chr19	1486914	rs142181980	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,17:32:32:0.531:2	./.	./.	./.
chr19	1488242	rs200277717	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,11:16:67:0.164:2	./.	./.	./.	./.	./.	./.	./.
chr19	1490285	rs73516829	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:33:5:0.800:2	./.	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	./.	./.	./.	./.
chr19	1497493	rs111564187	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:24:4:0.750:2
chr19	1497543	rs1050017	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:14,3:28:17:0.176:2	./.	./.	0/1:22,9:25:31:0.290:2	./.	0/1:18,8:28:26:0.308:2	./.	./.	./.	0/1:14,9:26:23:0.391:2	./.
chr19	1497547	rs78735375	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,3:32:26:0.115:2	./.	./.	./.	./.	./.	./.
chr19	1497762	rs112208222	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,44:30:67:0.657:2	./.	./.	./.	./.	./.	0/1:8,15:31:23:0.652:2
chr19	1510355	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:31:140:0.029:2	./.	./.	./.
chr19	1510661	rs265291	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,2:27:2:1.00:2	./.	./.	0/1:0,3:28:3:1.00:2	./.	0/1:0,3:27:3:1.00:2	./.	./.	./.	./.	./.
chr19	1556469	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr19	1622116	rs2240590	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:30:5:0.800:2	./.	./.	./.	./.	./.	./.	./.
chr19	1624007	rs55677929	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,8:31:24:0.333:2	0/1:13,4:32:17:0.235:2	./.	0/1:8,13:28:21:0.619:2	0/1:12,20:34:32:0.625:2	./.	./.
chr19	1627365	rs35354874	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,6:25:16:0.375:2	./.	./.	./.	./.
chr19	1783261	rs2385387	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,36:32:37:0.973:2	0/1:0,19:31:19:1.00:2	./.	0/1:0,35:31:35:1.00:2	0/1:0,37:31:37:1.00:2	0/1:22,31:31:53:0.585:2	0/1:34,21:32:55:0.382:2	0/1:29,25:32:54:0.463:2	0/1:33,25:33:58:0.431:2	0/1:0,28:32:28:1.00:2	./.
chr19	1784890	rs3764605	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,50:30:53:0.943:2	0/1:0,20:30:20:1.00:2	./.	0/1:1,86:30:88:0.989:2	0/1:2,144:30:146:0.986:2	0/1:48,50:31:98:0.510:2	0/1:71,73:30:144:0.507:2	0/1:70,48:29:118:0.407:2	0/1:53,39:30:92:0.424:2	0/1:1,59:29:60:0.983:2	./.
chr19	1784944	rs3764606	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,20:30:22:0.909:2	0/1:0,15:31:15:1.00:2	./.	0/1:1,63:29:64:0.984:2	0/1:1,70:30:71:0.986:2	0/1:36,24:30:60:0.400:2	0/1:39,29:31:68:0.426:2	0/1:41,35:30:76:0.461:2	0/1:24,22:31:46:0.478:2	0/1:0,49:31:49:1.00:2	./.
chr19	1789721	rs56335545	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,10:32:20:0.500:2	./.	./.	./.	./.	0/1:3,5:32:8:0.625:2
chr19	1796943	rs62127692	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:31:3:1.00:2	0/1:17,15:32:32:0.469:2	./.	./.	./.	./.	./.	0/1:10,11:33:21:0.524:2	./.
chr19	1800448	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:32:42:0.095:2	./.	./.
chr19	1806083	rs56193578	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,3:30:13:0.231:2	./.	./.	./.	0/1:46,39:31:85:0.459:2	./.	./.	./.	./.
chr19	1807222	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:31:166:0.024:2	./.	./.	./.	./.
chr19	1808275	rs61739534	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,7:31:18:0.389:2	0/1:95,81:31:176:0.460:2	./.	./.	./.	./.	./.	./.	./.
chr19	1810605	rs716993	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,51:29:51:1.00:2	0/1:0,27:30:27:1.00:2	./.	0/1:0,42:31:42:1.00:2	0/1:0,68:30:68:1.00:2	0/1:0,76:30:76:1.00:2	0/1:0,72:30:72:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,31:30:31:1.00:2
chr19	1811547	rs12609187	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:29:43:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,2:29:2:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,59:29:59:1.00:2	0/1:0,64:30:64:1.00:2	0/1:0,61:29:61:1.00:2	0/1:0,72:29:72:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,37:29:37:1.00:2	0/1:0,51:29:51:1.00:2
chr19	1811603	rs7250872	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,38:32:74:0.514:2	0/1:51,29:32:80:0.363:2	0/1:29,28:34:57:0.491:2	./.	0/1:29,13:34:42:0.310:2
chr19	1816483	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,4:33:28:0.143:2
chr19	1817693	rs201434910	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,44:30:93:0.473:2	./.	./.	./.	./.	./.	./.	./.
chr19	1819125	rs2396359	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,23:29:59:0.390:2	0/1:66,34:29:100:0.340:2	0/1:51,24:31:75:0.320:2	./.	0/1:33,29:30:62:0.468:2
chr19	1821637	rs4807145	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,50:31:51:0.980:2	0/1:0,37:32:37:1.00:2	./.	0/1:0,92:31:92:1.00:2	0/1:0,108:30:108:1.00:2	0/1:0,81:31:81:1.00:2	0/1:1,85:32:87:0.988:2	0/1:0,113:30:114:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,44:31:44:1.00:2
chr19	1827565	rs10415018	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,13:29:27:0.481:2	./.	./.	./.
chr19	1880950	rs4807160	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,27:27:27:1.00:2	0/1:2,17:28:19:0.895:2	./.	0/1:0,35:28:35:1.00:2	0/1:0,42:28:42:1.00:2	0/1:0,32:28:32:1.00:2	0/1:22,21:29:44:0.488:2	0/1:30,20:30:50:0.400:2	0/1:22,14:26:36:0.389:2	0/1:0,25:27:25:1.00:2	0/1:0,20:27:20:1.00:2
chr19	1905405	rs12974606	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	0/1:4,6:31:10:0.600:2	0/1:11,9:31:20:0.450:2	0/1:11,12:32:23:0.522:2	./.	./.
chr19	1912934	rs12984675	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,9:29:23:0.391:2	./.	./.	./.
chr19	1915036	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,5:30:135:0.037:2	./.	./.	./.
chr19	1978368	rs145719266	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,16:30:32:0.500:2	./.	./.
chr19	1979386	rs11550450	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,24:30:40:0.600:2	./.	./.	./.	./.	./.	./.	./.
chr19	1986520	rs7253519	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,7:31:18:0.389:2	0/1:52,76:30:128:0.594:2	./.	./.	./.	0/1:91,98:31:189:0.519:2	./.	./.	./.
chr19	1986549	rs376475938	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,5:31:176:0.028:2	./.	./.	./.	./.
chr19	1997363	rs1610045	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:32:3:1.00:2	0/1:0,41:29:41:1.00:2	./.	./.	./.	0/1:31,33:29:64:0.516:2	0/1:16,23:31:39:0.590:2	0/1:27,14:28:41:0.341:2	./.
chr19	2046225	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:31:57:0.070:2	./.	./.	./.	./.
chr19	2046433	rs56307191	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,11:31:27:0.407:2	./.	./.	./.	./.	./.
chr19	2078221	rs11541046	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,180:32:182:0.989:2	0/1:105,86:31:191:0.450:2	./.	./.	0/1:68,74:32:142:0.521:2
chr19	2078409	rs2074893	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,15:32:27:0.556:2	0/1:17,14:30:31:0.452:2	0/1:0,18:32:18:1.00:2	0/1:6,11:30:17:0.647:2	0/1:12,17:33:29:0.586:2	./.	0/1:9,4:34:13:0.308:2
chr19	2078488	rs2074894	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,27:30:60:0.450:2	0/1:29,10:31:39:0.256:2	0/1:3,56:30:59:0.949:2	0/1:24,15:30:39:0.385:2	0/1:22,13:32:35:0.371:2	./.	0/1:13,15:31:28:0.536:2
chr19	2078491	rs10421450	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,13:30:36:0.361:2	./.	./.
chr19	2097986	rs7250336	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,9:30:9:1.00:2	0/1:29,7:29:36:0.194:2	0/1:26,6:30:32:0.188:2	./.	0/1:9,4:24:13:0.308:2
chr19	2098754	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:35:41:0.098:2	./.
chr19	2099250	rs11668205	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,93:30:178:0.525:2	0/1:76,76:31:152:0.500:2	./.	0/1:42,60:31:102:0.588:2	./.
chr19	2109157	rs25673	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,35:32:70:0.500:2	0/1:45,21:31:66:0.318:2	./.	./.	./.	./.	./.	./.
chr19	2110746	rs20567	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,36:31:59:0.610:2	0/1:40,28:31:68:0.412:2	./.	./.	./.	./.	./.	./.
chr19	2114175	rs55698722	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,46:31:90:0.511:2	0/1:22,28:32:50:0.560:2	./.	./.	./.	./.	./.	./.
chr19	2116649	rs2074960	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,18:32:32:0.563:2	0/1:16,22:32:38:0.579:2	./.	./.	./.	./.	./.	./.
chr19	2118692	rs34569645	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,57:32:106:0.538:2	0/1:54,63:32:117:0.538:2	./.	./.	./.	./.	./.	./.
chr19	2138654	rs25672	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,45:30:87:0.517:2	0/1:24,23:30:47:0.489:2	0/1:10,13:30:23:0.565:2	0/1:82,67:30:149:0.450:2	./.	0/1:53,61:29:114:0.535:2	0/1:89,72:30:161:0.447:2	0/1:0,190:30:190:1.00:2	0/1:0,103:31:103:1.00:2	./.	0/1:2,97:30:100:0.980:2
chr19	2226676	rs3815308	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,2:34:2:1.00:2	./.	0/1:0,3:33:3:1.00:2
chr19	2249477	rs10407022	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:31:36:1.00:2	0/1:0,28:30:28:1.00:2	0/1:5,4:31:9:0.444:2	0/1:0,58:31:58:1.00:2	0/1:1,42:31:43:0.977:2	0/1:1,60:31:61:0.984:2	0/1:0,43:31:43:1.00:2	0/1:1,48:31:49:0.980:2	0/1:0,53:32:53:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,39:31:39:1.00:2
chr19	2251817	rs10417628	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,2:30:2:1.00:2	0/1:0,4:32:4:1.00:2	./.	0/1:0,6:32:6:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,5:34:5:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,2:34:2:1.00:2
chr19	2252990	rs80043033	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,13:32:32:0.406:2	./.	./.	0/1:1,13:28:14:0.929:2	./.	0/1:14,10:32:24:0.417:2	./.	./.
chr19	2254458	rs35121757	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,14:33:41:0.341:2	0/1:16,6:33:22:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,19:32:51:0.373:2
chr19	2276201	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	2278755	rs73518414	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	2290827	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:30:66:0.061:2	./.	./.	./.	./.
chr19	2290870	rs8111892	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,11:28:14:0.786:2	./.	0/1:4,6:27:10:0.600:2
chr19	2334615	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:31:87:0.046:2	./.	./.	./.	./.
chr19	2337468	rs3752205	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:74,70:32:144:0.486:2	./.	./.	./.	./.	./.	./.
chr19	2339913	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:172,4:32:176:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr19	2339949	rs3746285	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:32:103:1.00:2	0/1:0,45:32:45:1.00:2	0/1:12,10:32:22:0.455:2	0/1:0,84:32:84:1.00:2	0/1:52,68:31:120:0.567:2	0/1:1,85:31:86:0.988:2	./.	0/1:42,46:30:88:0.523:2	0/1:47,34:33:81:0.420:2	0/1:0,95:32:95:1.00:2	0/1:0,70:31:70:1.00:2
chr19	2339958	rs1609752	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:31:86:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,76:31:76:1.00:2	0/1:0,107:30:107:1.00:2	0/1:0,68:31:68:1.00:2	0/1:1,92:30:93:0.989:2	0/1:1,72:30:73:0.986:2	0/1:0,56:30:56:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,59:30:59:1.00:2
chr19	2344022	rs1128392	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,57:30:138:0.416:2	./.	./.	./.	./.
chr19	2344034	rs17852546	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,8:30:22:0.364:2	0/1:6,7:32:13:0.538:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,14:30:33:0.424:2
chr19	2353150	rs1128402	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	0/1:3,6:30:9:0.667:2	./.	./.	./.
chr19	2389872	rs891174	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:50,30:32:80:0.375:2	0/1:28,22:30:50:0.440:2	./.	0/1:0,68:31:68:1.00:2	0/1:128,46:32:174:0.264:2	0/1:0,114:31:114:1.00:2	0/1:0,73:32:73:1.00:2	0/1:97,60:32:157:0.382:2	./.	0/1:0,81:32:81:1.00:2	0/1:63,34:32:97:0.351:2
chr19	2396556	rs7252886	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:30:6:1.00:2	./.	0/1:30,21:28:51:0.412:2	./.	./.	0/1:1,60:30:61:0.984:2	./.	./.	./.
chr19	2396611	rs17685098	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:29:8:1.00:2	./.	0/1:39,32:29:71:0.451:2	./.	./.	0/1:0,81:31:81:1.00:2	./.	./.	./.
chr19	2408448	rs141038366	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,27:30:53:0.519:2	./.	./.	./.
chr19	2408486	rs62120712	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:29:9:0.556:2	./.	0/1:37,19:30:56:0.339:2	./.	./.	./.	./.	./.	./.
chr19	2408495	rs62120713	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:32:8:0.375:2	./.	0/1:40,18:27:58:0.310:2	./.	./.	./.	./.	./.	./.
chr19	2408530	rs62120714	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:31:12:0.417:2	./.	0/1:46,33:32:79:0.418:2	./.	./.	./.	./.	./.	./.
chr19	2410332	rs3848635	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:34:11:0.455:2	./.	0/1:58,80:32:138:0.580:2	./.	0/1:128,4:33:132:0.030:2	0/1:53,56:32:110:0.514:2	0/1:50,38:33:88:0.432:2	./.	./.
chr19	2413775	rs10153477	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,27:32:48:0.563:2	./.	./.
chr19	2413911	rs10153474	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,10:29:34:0.294:2	./.	./.
chr19	2413961	rs10153475	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:32:9:0.556:2	./.	0/1:28,20:33:48:0.417:2	./.	./.	0/1:26,31:33:57:0.544:2	0/1:20,21:32:41:0.512:2	./.	./.
chr19	2415801	rs61732208	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:31:5:0.800:2	./.	0/1:22,30:31:52:0.577:2	./.	./.	./.	./.	./.	./.
chr19	2416796	rs45546534	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,10:32:18:0.556:2	./.	./.
chr19	2418031	rs11084939	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,24:32:57:0.421:2	./.	./.	./.	./.	./.	./.
chr19	2422177	rs735911	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	0/1:30,28:30:59:0.483:2	./.	./.	./.	./.	./.	./.
chr19	2422191	rs34615361	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,21:32:29:0.724:2	0/1:13,11:32:24:0.458:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	2427266	rs968688	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,5:29:26:0.192:2	./.	./.	./.	./.	./.	./.
chr19	2433890	rs11084940	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:17,17:31:34:0.500:2	0/1:10,13:32:23:0.565:2	./.	./.	0/1:35,55:32:90:0.611:2	./.	./.	0/1:0,68:32:68:1.00:2	0/1:37,23:33:60:0.383:2	./.	0/1:35,14:33:49:0.286:2
chr19	2717256	rs3745812	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,93:32:162:0.578:2	./.	./.	./.	./.
chr19	2732986	rs759073	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.
chr19	2733250	rs61736898	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,6:33:9:0.667:2	0/1:0,16:31:16:1.00:2	0/1:3,7:33:10:0.700:2	0/1:8,9:32:17:0.529:2	./.	0/1:1,7:33:8:0.875:2	./.
chr19	2762585	rs2302491	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,41:29:73:0.562:2	0/1:19,15:29:34:0.441:2	./.	./.	./.	0/1:83,59:30:142:0.415:2	0/1:79,63:30:142:0.444:2	./.	./.	0/1:54,40:30:94:0.426:2	./.
chr19	2767192	rs1128925	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,42:33:65:0.646:2	0/1:12,21:32:33:0.636:2	./.	./.	./.	0/1:31,24:31:55:0.436:2	0/1:19,27:32:46:0.587:2	./.	./.	0/1:20,28:31:48:0.583:2	./.
chr19	2805062	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:26:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	2807444	rs138224189	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:31:14:0.429:2	./.	./.	./.	./.	./.	./.	./.
chr19	2833802	rs867168	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:24,23:31:47:0.489:2	0/1:12,10:32:22:0.455:2	./.	./.	./.	./.	0/1:31,19:34:50:0.380:2	./.	./.	0/1:39,20:33:59:0.339:2	./.
chr19	2833864	rs867169	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:32,30:32:62:0.484:2	0/1:8,11:32:19:0.579:2	./.	./.	./.	./.	0/1:42,14:31:56:0.250:2	./.	./.	0/1:34,22:31:56:0.393:2	./.
chr19	2833943	rs34753687	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:31:12:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	2834595	rs61744481	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,10:30:16:0.625:2	./.	./.	./.	./.	0/1:62,60:32:122:0.492:2	0/1:36,57:33:93:0.613:2	./.	0/1:61,61:32:122:0.500:2
chr19	2834808	rs8102063	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,14:30:34:0.412:2	0/1:9,16:29:25:0.640:2	./.	0/1:0,30:29:30:1.00:2	0/1:0,24:28:24:1.00:2	0/1:21,20:29:41:0.488:2	./.	0/1:24,20:31:44:0.455:2	./.	./.	0/1:24,12:29:36:0.333:2
chr19	2852650	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:115,4:31:119:0.034:2	./.	./.	./.	./.	./.	./.
chr19	2852735	rs61748311	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,23:29:52:0.442:2	./.	./.	./.	./.	./.	./.
chr19	2852744	rs35627030	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	0/1:43,17:31:60:0.283:2	./.	0/1:37,34:33:71:0.479:2
chr19	2853566	rs10412087	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:32:69:1.00:2	0/1:0,31:32:31:1.00:2	0/1:4,4:33:8:0.500:2	0/1:0,67:33:67:1.00:2	0/1:1,85:31:86:0.988:2	0/1:59,49:33:108:0.454:2	0/1:2,72:32:74:0.973:2	0/1:1,77:32:78:0.987:2	0/1:46,52:33:98:0.531:2	0/1:0,60:32:60:1.00:2	0/1:0,94:33:94:1.00:2
chr19	2853624	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:30:96:0.042:2	./.	./.	./.
chr19	2853650	rs45587443	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,39:31:106:0.368:2	./.	./.	./.	./.	./.	./.
chr19	2877365	rs10421121	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,39:32:96:0.406:2	./.	./.	./.	0/1:60,33:32:93:0.355:2	0/1:44,48:33:92:0.522:2	./.	0/1:51,36:33:87:0.414:2
chr19	2916111	rs117724451	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,62:34:142:0.437:2	./.	./.	./.	./.	./.	./.	./.
chr19	2917178	rs61742111	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,48:32:110:0.436:2	./.	./.	./.	./.	./.	./.	./.
chr19	2917186	rs2288959	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:28:55:1.00:2	0/1:0,39:28:39:1.00:2	0/1:0,14:28:14:1.00:2	0/1:0,99:29:100:1.00:2	0/1:0,94:28:94:1.00:2	0/1:0,84:28:84:1.00:2	0/1:0,115:28:115:1.00:2	0/1:55,53:29:109:0.491:2	0/1:0,84:29:84:1.00:2	0/1:0,65:28:65:1.00:2	0/1:0,95:27:95:1.00:2
chr19	2917287	rs2288958	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,27:32:47:0.574:2	0/1:10,12:32:22:0.545:2	0/1:0,4:31:4:1.00:2	0/1:24,21:31:45:0.467:2	0/1:2,46:30:48:0.958:2	./.	./.	./.	0/1:0,45:32:46:1.00:2	0/1:17,23:31:40:0.575:2	0/1:23,33:31:56:0.589:2
chr19	2917509	rs61754927	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,9:30:40:0.225:2	./.	./.	./.	./.	./.	./.	./.
chr19	2917522	rs61754924	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,8:32:38:0.211:2	./.	./.	./.	./.	./.	./.	./.
chr19	2917612	rs10410539	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:31:47:1.00:2	0/1:0,35:29:35:1.00:2	0/1:0,4:30:4:1.00:2	0/1:35,21:29:56:0.375:2	0/1:0,31:31:31:1.00:2	0/1:0,36:31:36:1.00:2	0/1:1,46:30:47:0.979:2	0/1:35,28:30:63:0.444:2	0/1:0,54:31:54:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,46:31:46:1.00:2
chr19	2917798	rs61755868	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,44:32:106:0.415:2	./.	./.	./.	./.	./.	./.	./.
chr19	2917813	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:31:141:0.029:2
chr19	2918013	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:34:125:0.032:2	./.	./.	./.
chr19	2934282	rs3746073	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,78:30:78:1.00:2	0/1:0,46:29:46:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,103:29:103:1.00:2	0/1:54,46:28:100:0.460:2	0/1:0,100:29:100:1.00:2	0/1:3,102:29:105:0.971:2	0/1:2,85:29:87:0.977:2	0/1:1,120:30:121:0.992:2	0/1:0,77:29:77:1.00:2	0/1:0,98:29:98:1.00:2
chr19	2934519	rs10423550	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,64:32:151:0.424:2	./.	./.	./.
chr19	2936535	rs35699176	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,14:30:29:0.483:2	./.	./.	0/1:26,19:31:45:0.422:2
chr19	2936623	rs4807371	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:32:50:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,65:31:65:1.00:2	0/1:28,17:31:45:0.378:2	0/1:0,59:31:59:1.00:2	0/1:0,35:32:35:1.00:2	0/1:1,56:31:57:0.982:2	0/1:1,74:32:75:0.987:2	0/1:0,61:31:61:1.00:2	0/1:0,79:31:79:1.00:2
chr19	2939289	rs12608916	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,27:32:60:0.450:2	./.	./.	0/1:31,35:32:66:0.530:2	./.	0/1:33,35:32:69:0.515:2	./.	./.
chr19	2939396	rs12609268	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,30:32:50:0.600:2	./.	./.	0/1:32,23:32:55:0.418:2	./.	0/1:32,34:34:66:0.515:2	./.	./.
chr19	2939401	rs12610412	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,29:33:48:0.604:2	./.	./.	0/1:31,23:32:54:0.426:2	./.	0/1:28,31:33:59:0.525:2	./.	./.
chr19	2989697	rs6510730	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,9:30:19:0.474:2	./.	./.	./.	0/1:115,76:30:191:0.398:2	./.	0/1:0,178:30:178:1.00:2	./.	0/1:78,51:29:129:0.395:2
chr19	2994903	rs34831575	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,12:30:34:0.353:2	0/1:24,23:32:47:0.489:2	./.	0/1:0,25:30:25:1.00:2	0/1:16,14:29:30:0.467:2	0/1:9,16:29:25:0.640:2
chr19	2994921	rs34551565	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,22:31:45:0.489:2	0/1:29,27:31:56:0.482:2	./.	0/1:0,30:30:30:1.00:2	0/1:18,17:31:35:0.486:2	0/1:14,15:31:29:0.517:2
chr19	2997897	rs11150	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,70:31:165:0.424:2	./.	./.	./.	./.	0/1:84,65:31:150:0.436:2
chr19	3000655	rs143713547	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,40:31:86:0.465:2	0/1:55,55:31:110:0.500:2	./.	./.	./.	./.
chr19	3000663	rs117008739	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,41:31:90:0.456:2	0/1:61,58:31:119:0.487:2	./.	./.	./.	./.
chr19	3005474	rs61735274	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:30,20:31:50:0.400:2	0/1:19,16:32:35:0.457:2	./.	./.	0/1:41,41:31:82:0.500:2	./.	./.	./.	./.	./.	./.
chr19	3011146	rs118030930	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,32:29:79:0.405:2	0/1:53,40:30:94:0.430:2	./.	./.	./.	./.
chr19	3014639	rs216273	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,29:29:29:1.00:2	0/1:16,21:28:37:0.568:2	./.	./.	./.	0/1:19,15:30:34:0.441:2
chr19	3015692	rs201144885	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,23:32:57:0.404:2	./.	./.	./.
chr19	3028871	rs2288950	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,15:30:27:0.556:2	./.	./.	./.	./.	0/1:15,13:31:28:0.464:2	0/1:16,13:31:29:0.448:2	0/1:26,7:30:33:0.212:2	0/1:0,24:33:24:1.00:2	./.	0/1:15,19:29:34:0.559:2
chr19	3053880	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:29:101:0.040:2	./.	./.	./.	./.
chr19	3056285	rs58280427	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,32:30:77:0.416:2	./.	0/1:39,44:30:83:0.530:2	0/1:1,92:31:93:0.989:2	./.	./.
chr19	3062857	rs11539938	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:18,21:33:39:0.538:2	0/1:13,10:33:23:0.435:2	./.	0/1:54,31:34:85:0.365:2	./.	0/1:21,34:33:55:0.618:2	./.	./.	0/1:38,32:35:70:0.457:2	./.	0/1:52,32:33:84:0.381:2
chr19	3119239	rs4900	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:32:62:1.00:2	0/1:0,24:32:24:1.00:2	0/1:1,3:31:4:0.750:2	0/1:0,73:31:73:1.00:2	./.	./.	./.	0/1:52,39:31:91:0.429:2	0/1:38,28:33:66:0.424:2	./.	0/1:50,30:32:80:0.375:2
chr19	3150238	rs310680	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:32:44:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,37:32:38:1.00:2
chr19	3162909	rs1637656	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:38,39:31:77:0.506:2	0/1:24,22:32:46:0.478:2	./.	0/1:72,63:30:135:0.467:2	0/1:112,82:30:194:0.423:2	./.	0/1:92,98:31:190:0.516:2	0/1:94,80:31:174:0.460:2	./.	0/1:44,46:30:90:0.511:2	./.
chr19	3179021	rs34728133	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,11:31:17:0.647:2	0/1:7,4:32:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	3179075	rs34573539	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,13:32:39:0.333:2	./.	./.	./.	./.	./.	./.
chr19	3179792	rs146476759	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,19:31:29:0.655:2	./.	./.	./.	./.	./.	./.
chr19	3186085	rs11551095	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,15:31:36:0.417:2	0/1:2,5:31:7:0.714:2	./.	0/1:0,52:30:52:1.00:2	0/1:0,83:30:83:1.00:2	0/1:0,58:31:58:1.00:2	0/1:44,40:31:84:0.476:2	0/1:28,55:30:83:0.663:2	./.	0/1:21,27:30:49:0.563:2	0/1:9,19:30:28:0.679:2
chr19	3207422	rs3816054	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,21:28:50:0.420:2	./.	./.	./.	./.	./.	./.	./.
chr19	3207646	rs2288949	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,31:32:86:0.360:2	./.	./.	./.	./.	./.	./.	./.
chr19	3224896	rs17852497	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:26,14:31:40:0.350:2	0/1:18,10:31:28:0.357:2	./.	0/1:68,46:32:114:0.404:2	./.	./.	0/1:43,53:30:96:0.552:2	./.	./.	./.	./.
chr19	3281298	rs36030381	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,6:31:13:0.462:2
chr19	3293402	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:30:60:0.067:2	./.	./.	./.	./.
chr19	3293405	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:29:55:0.073:2	./.	./.	./.	./.
chr19	3381736	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,5:30:49:0.102:2	./.	./.	./.	./.	./.	./.
chr19	3381757	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,5:27:68:0.074:2	./.	./.	./.	./.	./.	./.
chr19	3381761	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,5:31:71:0.070:2	./.	./.	./.	./.	./.	./.
chr19	3381846	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,31:33:79:0.392:2	./.	./.
chr19	3449078	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,25:6:61:0.410:2	./.	./.	./.	./.
chr19	3449082	rs117114356	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,6:17:33:0.182:2	./.	0/1:32,11:11:43:0.256:2	./.	./.	./.	./.	./.
chr19	3534842	rs10155	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,12:32:21:0.571:2	0/1:35,35:32:70:0.500:2	0/1:0,126:32:126:1.00:2	0/1:1,86:32:88:0.989:2	./.	0/1:53,73:33:126:0.579:2	./.	./.	./.
chr19	3543397	rs12608919	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:32:5:0.800:2	0/1:11,6:32:17:0.353:2	0/1:0,24:32:24:1.00:2	0/1:0,29:31:29:1.00:2	0/1:7,4:32:11:0.364:2	0/1:0,20:32:20:1.00:2	./.	./.	./.
chr19	3543980	rs190228213	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,59:33:145:0.407:2	./.	./.
chr19	3576989	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,3:25:11:0.273:2	./.
chr19	3586543	rs8113232	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,20:31:46:0.435:2	0/1:17,23:30:40:0.575:2	./.	./.	./.	./.
chr19	3595794	rs4523	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,29:30:60:0.483:2	0/1:31,21:31:52:0.404:2	0/1:8,5:33:13:0.385:2	0/1:66,96:31:162:0.593:2	0/1:2,115:31:117:0.983:2	./.	0/1:51,38:30:89:0.427:2	0/1:78,49:31:127:0.386:2	0/1:53,47:33:100:0.470:2	0/1:0,92:31:92:1.00:2	0/1:0,42:31:42:1.00:2
chr19	3595923	rs1131882	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:13,17:31:30:0.567:2	0/1:8,11:31:19:0.579:2	./.	0/1:23,19:30:42:0.452:2	./.	0/1:12,22:29:34:0.647:2	./.	./.	0/1:17,11:31:29:0.393:2	./.	./.
chr19	3599872	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:33:91:0.044:2	./.	./.	./.	./.	./.
chr19	3600390	rs5745	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:32:5:0.800:2	./.	./.	./.	./.	./.	./.	0/1:9,6:32:15:0.400:2	./.
chr19	3611972	rs2158935	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,31:31:58:0.534:2	0/1:24,24:32:48:0.500:2	./.	0/1:55,41:31:96:0.427:2	0/1:0,82:32:82:1.00:2	./.	0/1:55,39:32:94:0.415:2	0/1:52,54:32:107:0.509:2	0/1:47,35:32:82:0.427:2	0/1:33,38:32:71:0.535:2	0/1:0,56:32:56:1.00:2
chr19	3614403	rs7255692	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:30:68:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,79:31:79:1.00:2	0/1:39,14:32:53:0.264:2	0/1:0,86:31:86:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,40:31:40:1.00:2
chr19	3626619	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr19	3633115	rs1879037	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:30:11:0.545:2	./.	./.	./.	./.	./.	./.	./.
chr19	3633192	rs542462	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,7:33:15:0.467:2	./.	./.	./.	0/1:11,10:33:21:0.476:2	0/1:0,17:32:17:1.00:2	0/1:11,5:33:16:0.313:2	./.	./.	./.	./.
chr19	3653525	rs2074957	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,73:32:73:1.00:2	0/1:2,50:31:52:0.962:2	./.	0/1:60,50:31:110:0.455:2	0/1:0,146:32:146:1.00:2	0/1:61,56:31:117:0.479:2	./.	0/1:88,55:32:143:0.385:2	0/1:0,86:33:86:1.00:2	0/1:39,59:32:98:0.602:2	0/1:0,90:30:90:1.00:2
chr19	3667294	rs114799461	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	./.	0/1:26,17:29:44:0.395:2	./.	./.	0/1:22,12:31:34:0.353:2	./.
chr19	3728609	rs2067019	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,9:32:28:0.321:2	./.	./.	./.	0/1:24,10:30:34:0.294:2	0/1:19,15:31:34:0.441:2	./.
chr19	3730037	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,23:32:47:0.489:2	./.	./.	./.	./.	./.	./.	./.
chr19	3730041	rs7258176	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,29:32:61:0.475:2	0/1:13,11:29:24:0.458:2	0/1:0,9:31:9:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,77:31:77:1.00:2	0/1:0,70:30:70:1.00:2	0/1:0,111:31:111:1.00:2	0/1:47,48:32:95:0.505:2	0/1:0,80:32:80:1.00:2	0/1:38,26:31:64:0.406:2	./.
chr19	3731985	rs1879040	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,6:32:10:0.600:2	0/1:15,9:33:24:0.375:2	0/1:0,41:32:41:1.00:2	0/1:1,33:32:34:0.971:2	0/1:11,20:32:31:0.645:2	./.	./.	0/1:17,18:33:35:0.514:2	./.
chr19	3733831	rs34564453	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,47:30:119:0.395:2	./.	./.	./.	./.	./.	./.	./.
chr19	3738649	rs599587	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,37:29:71:0.521:2	0/1:26,30:28:56:0.536:2	0/1:0,11:31:11:1.00:2	0/1:0,106:29:106:1.00:2	0/1:0,131:29:131:1.00:2	0/1:0,99:30:99:1.00:2	0/1:1,140:28:141:0.993:2	0/1:2,144:29:146:0.986:2	0/1:0,82:30:82:1.00:2	0/1:44,27:28:71:0.380:2	./.
chr19	3738661	rs61729584	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,43:30:70:0.614:2	./.
chr19	3738971	rs600986	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,62:31:110:0.564:2	0/1:23,37:31:61:0.617:2	0/1:0,14:31:14:1.00:2	0/1:0,119:31:119:1.00:2	0/1:1,99:30:100:0.990:2	0/1:4,93:31:97:0.959:2	0/1:1,83:31:84:0.988:2	0/1:0,98:31:98:1.00:2	0/1:0,85:32:85:1.00:2	0/1:62,57:31:119:0.479:2	./.
chr19	3740658	rs10416362	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,10:30:19:0.526:2	0/1:0,16:32:16:1.00:2	0/1:0,36:31:36:1.00:2	./.	0/1:14,20:32:34:0.588:2	0/1:6,10:31:16:0.625:2	0/1:9,12:30:21:0.571:2	./.
chr19	3746000	rs117237302	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,13:31:26:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr19	3746087	rs501168	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:9,14:32:23:0.609:2	0/1:8,3:33:11:0.273:2	0/1:1,3:33:4:0.750:2	./.	0/1:19,16:32:35:0.457:2	0/1:1,41:32:42:0.976:2	0/1:24,33:32:57:0.579:2	0/1:0,55:32:55:1.00:2	0/1:21,15:33:36:0.417:2	./.	./.
chr19	3750615	rs1046268	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,13:29:64:0.203:2	0/1:17,12:30:29:0.414:2	0/1:9,8:30:17:0.471:2	0/1:33,38:29:71:0.535:2	0/1:31,13:28:44:0.295:2	0/1:1,42:28:43:0.977:2	0/1:40,22:29:62:0.355:2	0/1:35,24:30:59:0.407:2	0/1:38,22:30:60:0.367:2	0/1:27,27:30:54:0.500:2	0/1:50,29:29:79:0.367:2
chr19	3750622	rs1046271	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,15:32:61:0.246:2	0/1:19,12:32:31:0.387:2	0/1:8,8:33:16:0.500:2	0/1:35,36:32:71:0.507:2	0/1:35,13:31:48:0.271:2	0/1:0,42:31:42:1.00:2	0/1:45,28:33:74:0.384:2	0/1:36,24:32:60:0.400:2	0/1:36,21:33:57:0.368:2	0/1:28,26:33:54:0.481:2	0/1:50,30:31:81:0.375:2
chr19	3751474	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,4:30:20:0.200:2	./.	./.	./.	./.	./.	./.	./.
chr19	3752515	rs61735536	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2
chr19	3752874	rs8102086	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,15:28:45:0.333:2	0/1:3,7:29:10:0.700:2	0/1:1,2:31:3:0.667:2	0/1:26,18:29:44:0.409:2	0/1:14,12:30:26:0.462:2	0/1:0,39:30:39:1.00:2	0/1:11,17:30:28:0.607:2	0/1:30,14:29:44:0.318:2	0/1:29,7:32:36:0.194:2	0/1:23,15:30:38:0.395:2	0/1:0,27:28:27:1.00:2
chr19	3753769	rs3746120	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,7:33:13:0.538:2	0/1:8,4:32:12:0.333:2	./.	./.	0/1:5,3:32:8:0.375:2	0/1:4,16:32:20:0.800:2	0/1:7,9:31:16:0.563:2	0/1:10,11:32:21:0.524:2	0/1:10,3:31:13:0.231:2	0/1:4,6:31:10:0.600:2	./.
chr19	3753874	rs34868972	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:2,5:31:7:0.714:2	./.	./.	./.	0/1:8,14:31:22:0.636:2	./.	./.	./.	0/1:4,6:33:10:0.600:2	./.	./.
chr19	3754020	rs61731066	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,25:29:56:0.446:2	./.	./.	./.	./.	./.	./.	./.
chr19	3759574	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,4:32:39:0.103:2	./.	./.	./.	./.	./.	./.	./.
chr19	3762698	rs13960	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,41:30:42:0.976:2	0/1:0,25:31:25:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,76:29:76:1.00:2	0/1:37,40:29:77:0.519:2	0/1:0,66:29:66:1.00:2	./.	0/1:60,59:29:119:0.496:2	0/1:53,32:30:85:0.376:2	./.	0/1:0,45:29:45:1.00:2
chr19	3762766	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,6:18:33:0.182:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	3767265	rs7239	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,9:32:20:0.450:2	0/1:7,11:32:18:0.611:2	0/1:0,2:31:2:1.00:2	0/1:0,32:30:32:1.00:2	0/1:17,12:31:30:0.414:2	0/1:0,42:30:42:1.00:2	./.	0/1:18,25:31:43:0.581:2	0/1:0,34:32:34:1.00:2	./.	0/1:0,25:31:25:1.00:2
chr19	3778404	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,3:30:29:0.103:2	./.	./.	./.
chr19	3785134	rs141024639	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,8:33:15:0.533:2	./.	./.
chr19	3813906	rs45465594	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,43:32:87:0.494:2	./.	./.	./.
chr19	3820191	rs2301843	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,3:26:11:0.273:2	./.	./.	0/1:9,14:30:23:0.609:2	0/1:16,14:30:30:0.467:2	0/1:14,21:29:35:0.600:2	0/1:16,8:31:24:0.333:2	./.	0/1:12,15:31:27:0.556:2	0/1:13,15:30:28:0.536:2	./.
chr19	3821408	rs61742027	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,8:31:10:0.800:2
chr19	3831449	rs2240232	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:34:3:1.00:2	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.
chr19	3831525	rs2240233	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,10:30:25:0.400:2	0/1:6,12:31:18:0.667:2	0/1:6,4:32:10:0.400:2	0/1:33,19:31:52:0.365:2	0/1:31,30:30:61:0.492:2	0/1:25,16:30:41:0.390:2	0/1:24,23:31:47:0.489:2	./.	0/1:21,25:31:46:0.543:2	0/1:22,7:30:29:0.241:2	./.
chr19	3831709	rs2240234	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,9:31:16:0.563:2	0/1:4,11:32:15:0.733:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	3831765	rs2240235	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,21:32:33:0.636:2	./.	./.	0/1:38,38:31:76:0.500:2	0/1:30,32:30:62:0.516:2	0/1:34,27:30:61:0.443:2	0/1:17,27:31:44:0.614:2	./.	0/1:25,19:32:44:0.432:2	0/1:33,21:31:54:0.389:2	./.
chr19	3852460	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:32:121:0.033:2	./.
chr19	3920750	rs10420591	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,37:31:38:0.974:2	0/1:0,15:32:15:1.00:2	./.	0/1:20,16:32:36:0.444:2	./.	./.	./.	./.	0/1:22,22:34:44:0.500:2	./.	./.
chr19	3924616	rs190923267	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,47:29:85:0.553:2	./.	./.
chr19	3939928	rs4807536	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,23:31:72:0.319:2	0/1:17,19:31:36:0.528:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	3959300	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.
chr19	3963627	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:30:43:0.093:2	./.	./.	./.
chr19	3964757	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:34:163:0.025:2	./.	./.	./.
chr19	3976608	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,4:34:34:0.118:2
chr19	3977486	rs36527	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:29:19:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,2:33:2:1.00:2	0/1:8,10:31:18:0.556:2	0/1:0,16:28:16:1.00:2	0/1:0,7:31:7:1.00:2	0/1:5,9:31:14:0.643:2	0/1:0,19:29:19:1.00:2	0/1:0,9:32:9:1.00:2	./.	./.
chr19	3979408	rs36526	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:32:42:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,13:32:13:1.00:2	0/1:38,43:32:82:0.531:2	0/1:0,107:32:107:1.00:2	0/1:0,84:32:84:1.00:2	0/1:61,41:32:102:0.402:2	0/1:0,99:32:99:1.00:2	0/1:0,81:32:81:1.00:2	0/1:29,33:32:62:0.532:2	0/1:38,31:31:69:0.449:2
chr19	3982967	rs2230561	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,43:28:73:0.589:2	0/1:24,15:28:39:0.385:2	./.	./.	0/1:24,30:29:54:0.556:2	./.	./.
chr19	3983184	rs2230560	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:99,82:29:181:0.453:2	0/1:52,56:28:108:0.519:2	./.	./.	0/1:56,44:29:100:0.440:2	./.	./.
chr19	3983220	rs369558753	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:33:111:0.036:2	./.
chr19	4013272	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,3:32:40:0.075:2	./.
chr19	4013322	rs2289865	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,18:27:41:0.439:2	0/1:19,23:28:42:0.548:2	0/1:24,15:28:39:0.385:2	0/1:0,37:29:37:1.00:2	./.	0/1:18,14:30:32:0.438:2	0/1:15,12:26:27:0.444:2	0/1:14,24:27:38:0.632:2
chr19	4028783	rs2289863	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:30:7:1.00:2	0/1:32,24:30:57:0.429:2	0/1:51,30:31:83:0.370:2	0/1:26,30:31:56:0.536:2	0/1:0,63:31:63:1.00:2	0/1:1,59:31:60:0.983:2	0/1:13,17:32:30:0.567:2	0/1:21,14:30:35:0.400:2	0/1:19,10:29:29:0.345:2
chr19	4033462	rs7255988	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:30:19:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,3:29:3:1.00:2	0/1:0,35:30:35:1.00:2	0/1:36,29:30:65:0.446:2	0/1:11,19:30:30:0.633:2	0/1:0,42:30:42:1.00:2	0/1:0,50:30:50:1.00:2	0/1:25,24:31:49:0.490:2	0/1:0,29:31:29:1.00:2	0/1:0,27:29:27:1.00:2
chr19	4037412	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	4053974	rs138413340	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,14:30:31:0.452:2	./.	./.
chr19	4101062	rs10250	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,65:31:70:0.929:2	0/1:2,44:31:46:0.957:2	0/1:4,3:31:7:0.429:2	0/1:78,47:30:125:0.376:2	0/1:13,151:31:164:0.921:2	0/1:87,56:30:143:0.392:2	0/1:121,71:30:194:0.370:2	0/1:118,74:31:192:0.385:2	0/1:88,52:32:140:0.371:2	0/1:63,56:31:120:0.471:2	0/1:57,41:29:98:0.418:2
chr19	4102449	rs17851657	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,16:31:36:0.444:2	./.	0/1:0,16:33:16:1.00:2	0/1:11,11:32:22:0.500:2	./.
chr19	4117466	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,12:11:58:0.207:2	./.	0/1:54,17:12:71:0.239:2	./.	./.	./.
chr19	4117528	rs8157	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,36:30:80:0.450:2	./.	./.	./.	./.	./.	./.
chr19	4154910	rs35474881	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,74:32:151:0.490:2	0/1:61,49:32:110:0.445:2	0/1:43,16:32:59:0.271:2	0/1:33,32:32:65:0.492:2	0/1:33,27:32:60:0.450:2
chr19	4159702	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,18:31:32:0.563:2	./.	./.	./.	./.	./.	./.	./.
chr19	4164633	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	4175092	rs200395703	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,3:28:14:0.214:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	4180836	rs352493	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:31:26:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,59:30:59:1.00:2	0/1:37,23:30:61:0.383:2	0/1:0,51:30:51:1.00:2	0/1:0,77:31:77:1.00:2	0/1:0,89:30:89:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,50:31:50:1.00:2
chr19	4186395	rs2159983	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,24:32:51:0.471:2
chr19	4200156	rs2052191	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,12:31:32:0.375:2	0/1:17,7:30:24:0.292:2	0/1:0,8:30:8:1.00:2	0/1:40,33:30:73:0.452:2	./.	0/1:25,24:29:49:0.490:2	0/1:2,44:30:46:0.957:2	0/1:29,28:30:57:0.491:2	0/1:18,19:32:37:0.514:2	0/1:12,9:31:21:0.429:2	0/1:17,16:30:33:0.485:2
chr19	4207940	rs2240669	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:15,13:31:28:0.464:2	0/1:4,3:33:7:0.429:2	./.	./.	0/1:17,24:31:41:0.585:2	./.	./.	./.	./.	./.	0/1:10,12:31:22:0.545:2
chr19	4210356	rs12978469	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:32:75:1.00:2	0/1:0,47:32:47:1.00:2	0/1:6,15:32:21:0.714:2	0/1:76,44:32:120:0.367:2	0/1:53,33:32:86:0.384:2	0/1:46,50:32:96:0.521:2	0/1:1,103:32:104:0.990:2	0/1:73,33:32:106:0.311:2	0/1:52,40:33:92:0.435:2	0/1:59,51:33:110:0.464:2	0/1:0,100:33:100:1.00:2
chr19	4216318	rs45510899	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,35:31:77:0.455:2	0/1:45,63:32:108:0.583:2	./.	./.	./.	./.	./.	./.
chr19	4216910	rs10413818	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,18:32:18:1.00:2	0/1:0,8:32:8:1.00:2	./.	0/1:0,27:30:27:1.00:2	0/1:0,22:31:22:1.00:2	0/1:14,10:30:24:0.417:2	0/1:0,33:31:33:1.00:2	0/1:0,35:31:35:1.00:2	0/1:13,12:32:25:0.480:2	0/1:5,11:30:16:0.688:2	0/1:0,23:32:23:1.00:2
chr19	4217207	rs353693	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:33:48:1.00:2	0/1:1,47:32:48:0.979:2	0/1:7,3:32:10:0.300:2	0/1:0,114:33:114:1.00:2	0/1:1,74:33:75:0.987:2	0/1:34,60:32:94:0.638:2	0/1:0,95:33:95:1.00:2	0/1:1,88:32:89:0.989:2	0/1:41,63:34:104:0.606:2	0/1:0,63:32:63:1.00:2	0/1:0,75:32:75:1.00:2
chr19	4231216	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,5:28:126:0.040:2	./.	./.	./.	./.
chr19	4236996	rs4740	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,31:31:62:0.500:2	./.	0/1:46,30:30:76:0.395:2	0/1:39,36:32:75:0.480:2	0/1:44,53:31:97:0.546:2	0/1:18,20:33:38:0.526:2	./.	./.
chr19	4237067	rs4905	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,26:30:43:0.605:2	./.	0/1:21,15:28:36:0.417:2	0/1:16,26:31:42:0.619:2	0/1:39,34:30:73:0.466:2	0/1:18,14:32:32:0.438:2	./.	./.
chr19	4251069	rs1045750	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:31:12:0.500:2	./.	./.	0/1:103,63:29:166:0.380:2	0/1:81,58:29:139:0.417:2	0/1:94,41:28:135:0.304:2	0/1:70,63:31:133:0.474:2	./.	./.
chr19	4254375	rs11085068	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,7:31:13:0.538:2	0/1:57,48:30:105:0.457:2	./.	0/1:50,39:30:89:0.438:2	0/1:74,44:30:118:0.373:2	0/1:66,60:30:126:0.476:2	0/1:53,47:30:100:0.470:2	./.	./.
chr19	4267681	rs149224144	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,38:31:75:0.507:2	./.	./.	./.
chr19	4280186	rs10419363	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,13:27:37:0.351:2	./.	0/1:1,32:31:33:0.970:2	0/1:11,15:31:26:0.577:2	./.	0/1:26,20:32:46:0.435:2	./.	0/1:20,18:31:38:0.474:2
chr19	4280207	rs56261530	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,8:28:26:0.308:2	./.	./.	./.	./.	0/1:14,12:29:26:0.462:2	./.
chr19	4288332	rs888930	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:31:4:1.00:2	0/1:0,48:32:48:1.00:2	./.	./.	./.	0/1:36,28:33:64:0.438:2	0/1:0,35:33:35:1.00:2	./.	0/1:0,28:31:28:1.00:2
chr19	4292597	rs888932	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,28:29:29:0.966:2	0/1:14,11:30:25:0.440:2	./.	./.	0/1:15,12:30:27:0.444:2	0/1:11,15:28:26:0.577:2	0/1:0,19:29:19:1.00:2	0/1:14,7:26:21:0.333:2
chr19	4292841	rs28477168	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,8:33:20:0.400:2	./.	0/1:17,8:30:25:0.320:2
chr19	4294623	rs58237134	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,19:28:48:0.396:2	0/1:40,26:29:66:0.394:2	./.	0/1:44,18:29:62:0.290:2	./.	0/1:26,20:31:46:0.435:2	0/1:25,23:29:48:0.479:2	./.
chr19	4294807	rs78320454	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,6:31:7:0.857:2	0/1:34,31:32:65:0.477:2	0/1:17,32:32:49:0.653:2	./.	0/1:27,22:32:49:0.449:2	./.	./.	./.	./.
chr19	4302395	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,17:11:94:0.183:2	0/1:102,23:11:125:0.184:2	./.	./.	./.	./.
chr19	4306311	rs4807578	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,31:31:73:0.425:2	0/1:38,37:30:75:0.493:2	0/1:27,34:31:61:0.557:2	0/1:1,77:31:78:0.987:2	0/1:46,36:31:82:0.439:2	0/1:0,54:31:54:1.00:2	0/1:29,20:30:49:0.408:2	0/1:38,21:31:59:0.356:2
chr19	4310327	rs11879976	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,42:31:98:0.429:2	0/1:64,31:32:95:0.326:2	./.	0/1:45,53:32:98:0.541:2	./.	./.	./.	./.
chr19	4311942	rs34953789	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,22:32:48:0.458:2	./.
chr19	4312042	rs35139245	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,13:30:24:0.542:2	./.	./.	./.	./.
chr19	4318365	rs3745990	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,41:31:91:0.451:2	./.	./.	./.	0/1:56,56:32:113:0.500:2	./.	./.	0/1:32,34:31:66:0.515:2
chr19	4322990	rs67511110	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,14:31:23:0.609:2	./.	0/1:19,28:31:47:0.596:2	./.	./.	./.
chr19	4323571	rs1046580	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,78:29:170:0.459:2	./.	./.	./.	./.
chr19	4324564	rs57455784	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,22:30:48:0.458:2	./.	./.	./.	0/1:21,14:30:35:0.400:2	./.	./.	0/1:21,14:27:35:0.400:2
chr19	4325433	rs1138253	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:31:77:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,11:30:11:1.00:2	0/1:42,64:31:107:0.604:2	0/1:0,101:31:101:1.00:2	0/1:0,100:30:100:1.00:2	0/1:70,63:30:133:0.474:2	0/1:34,82:31:116:0.707:2	./.	./.	./.
chr19	4325436	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,5:27:142:0.035:2	./.	./.	./.	./.
chr19	4333711	rs7247504	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:32:29:1.00:2	0/1:0,22:31:22:1.00:2	0/1:1,3:32:4:0.750:2	0/1:0,43:31:43:1.00:2	0/1:0,25:31:25:1.00:2	0/1:2,28:31:30:0.933:2	0/1:24,26:32:50:0.520:2	0/1:43,22:31:65:0.338:2	0/1:26,20:32:46:0.435:2	0/1:0,32:30:32:1.00:2	./.
chr19	4352959	rs11882587	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:20,25:29:45:0.556:2	0/1:15,13:30:28:0.464:2	0/1:0,6:31:6:1.00:2	./.	./.	0/1:49,24:29:73:0.329:2	0/1:2,62:29:64:0.969:2	./.	./.	0/1:33,19:27:52:0.365:2	./.
chr19	4354378	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:33:139:0.029:2	./.	./.	./.
chr19	4357309	rs61730128	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,17:29:33:0.515:2	./.
chr19	4357555	rs4807583	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:29:44:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,6:30:6:1.00:2	0/1:1,49:30:50:0.980:2	0/1:0,61:29:61:1.00:2	0/1:0,76:29:76:1.00:2	0/1:0,62:28:63:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,51:29:51:1.00:2
chr19	4359191	rs34522164	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,20:32:34:0.588:2	0/1:12,7:32:19:0.368:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	4362691	rs243261	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	./.	./.	0/1:0,26:30:26:1.00:2	./.	./.	./.	./.
chr19	4366914	rs200647173	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,80:32:180:0.444:2	./.	./.	./.	./.	./.
chr19	4400314	rs62129356	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:31:7:0.571:2	0/1:0,3:31:3:1.00:2	./.	./.	./.	0/1:6,7:27:13:0.538:2	./.	./.	./.	0/1:9,7:30:16:0.438:2	./.
chr19	4409681	rs140222119	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,3:31:32:0.094:2	./.
chr19	4409756	rs2230636	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,15:32:23:0.652:2	0/1:9,6:31:15:0.400:2	./.	./.	./.	0/1:12,11:32:23:0.478:2	./.	./.	./.	0/1:11,13:30:24:0.542:2	./.
chr19	4423320	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:31:92:0.043:2	./.	./.	./.
chr19	4433253	rs45597332	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,30:32:62:0.484:2	./.
chr19	4433412	rs8100525	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,23:32:54:0.426:2	./.
chr19	4442336	rs9352	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:77,68:31:146:0.469:2	0/1:49,38:31:87:0.437:2	0/1:0,26:30:26:1.00:2	./.	./.	0/1:100,79:31:179:0.441:2	0/1:0,191:31:192:1.00:2	./.	./.	0/1:104,83:31:187:0.444:2	0/1:94,78:31:173:0.453:2
chr19	4442999	rs243383	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:28:39:1.00:2	0/1:0,29:29:29:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,46:29:46:1.00:2	0/1:0,45:29:45:1.00:2	0/1:0,56:29:56:1.00:2	0/1:0,37:28:37:1.00:2	0/1:0,56:29:56:1.00:2	0/1:0,46:29:46:1.00:2	0/1:0,26:28:27:1.00:2	0/1:0,34:28:34:1.00:2
chr19	4454000	rs11909	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,9:33:18:0.500:2	0/1:9,7:32:16:0.438:2	./.	0/1:0,32:32:32:1.00:2	0/1:0,28:32:28:1.00:2	0/1:11,21:31:32:0.656:2	0/1:6,3:32:9:0.333:2	0/1:0,22:33:22:1.00:2	0/1:0,21:30:21:1.00:2	./.	0/1:5,10:29:15:0.667:2
chr19	4454083	rs1127888	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,11:29:32:0.379:2	./.	./.	./.	./.	0/1:35,11:28:46:0.239:2	./.	./.	./.	0/1:14,8:26:22:0.364:2	0/1:23,15:30:40:0.395:2
chr19	4457650	rs1044510	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:28:10:1.00:2	./.	./.	./.	0/1:0,17:31:17:1.00:2	./.	./.	./.	./.
chr19	4493708	rs892161	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,18:28:18:1.00:2	0/1:0,13:27:13:1.00:2	./.	0/1:0,34:29:34:1.00:2	0/1:29,8:29:37:0.216:2	0/1:0,24:29:24:1.00:2	0/1:7,3:30:10:0.300:2	0/1:29,10:29:39:0.256:2	0/1:0,23:29:23:1.00:2	0/1:0,13:30:13:1.00:2	0/1:8,4:27:12:0.333:2
chr19	4496340	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:32:106:0.038:2
chr19	4496397	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:30:61:0.066:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	4498000	rs11878277	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:18,11:29:29:0.379:2	0/1:17,17:32:34:0.500:2	./.	./.	./.	./.	0/1:39,25:31:64:0.391:2	./.	./.	./.	./.
chr19	4508945	rs8105775	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:30:25:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,18:29:18:1.00:2
chr19	4510530	rs7250947	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,39:30:66:0.591:2	0/1:43,48:31:91:0.527:2	./.	./.	./.	./.	./.	./.
chr19	4510560	rs7251858	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:29:5:0.600:2	./.	./.	./.	0/1:40,29:31:69:0.420:2	0/1:33,28:29:61:0.459:2	./.	./.	0/1:27,22:31:50:0.449:2
chr19	4510723	rs78776990	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,9:30:14:0.643:2	./.	./.	./.	0/1:7,9:31:16:0.563:2	./.	0/1:2,7:28:9:0.778:2	./.
chr19	4510850	rs145519622	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,19:30:34:0.559:2	0/1:6,9:31:16:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	4511140	rs7255715	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:33:6:0.667:2	0/1:0,69:32:70:1.00:2	0/1:72,53:30:125:0.424:2	./.	0/1:66,39:30:105:0.371:2	0/1:3,90:32:94:0.968:2	./.	0/1:47,37:31:84:0.440:2	0/1:40,27:32:67:0.403:2
chr19	4511213	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:72,4:31:76:0.053:2	./.	./.	./.	./.	./.	./.	0/1:100,4:33:104:0.038:2	./.	./.	./.
chr19	4511223	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:72,7:28:79:0.089:2	./.	./.	0/1:78,6:30:84:0.071:2	0/1:87,4:29:91:0.044:2	0/1:126,8:31:134:0.060:2	0/1:88,8:30:96:0.083:2	0/1:103,6:30:109:0.055:2	0/1:85,8:33:93:0.086:2	0/1:83,7:31:90:0.078:2	0/1:82,7:31:89:0.079:2
chr19	4511278	rs10422078	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,29:28:60:0.483:2	0/1:80,26:28:106:0.245:2	./.	0/1:111,19:29:130:0.146:2	0/1:40,62:29:102:0.608:2	./.	0/1:79,13:30:92:0.141:2	0/1:81,23:30:104:0.221:2
chr19	4511281	rs7254934	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,47:32:100:0.470:2	0/1:34,21:31:55:0.382:2	0/1:11,4:32:15:0.267:2	0/1:29,31:31:60:0.517:2	0/1:63,41:30:104:0.394:2	0/1:91,50:31:141:0.355:2	0/1:72,55:32:127:0.433:2	0/1:64,37:31:101:0.366:2	0/1:70,44:33:114:0.386:2	0/1:50,40:33:90:0.444:2	0/1:54,48:32:102:0.471:2
chr19	4511283	rs80238130	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,28:31:61:0.467:2	0/1:81,23:30:104:0.221:2	./.	0/1:109,17:30:126:0.135:2	0/1:44,47:30:91:0.516:2	./.	0/1:83,11:30:94:0.117:2	0/1:82,19:31:101:0.188:2
chr19	4511284	rs10422854	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,28:31:62:0.459:2	0/1:83,23:31:106:0.217:2	./.	0/1:109,17:31:126:0.135:2	0/1:46,47:30:93:0.505:2	./.	0/1:82,12:31:94:0.128:2	0/1:82,19:31:101:0.188:2
chr19	4511341	rs74202324	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,7:32:131:0.053:2	./.	./.	0/1:141,4:33:145:0.028:2
chr19	4511350	rs7259721	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,110:32:122:0.909:2	0/1:8,61:32:69:0.884:2	0/1:1,11:30:12:0.917:2	0/1:0,121:31:122:1.00:2	0/1:8,161:31:169:0.953:2	0/1:19,158:31:177:0.893:2	0/1:15,156:31:171:0.912:2	0/1:0,145:31:146:1.00:2	0/1:11,127:32:138:0.920:2	0/1:10,114:32:126:0.919:2	0/1:11,138:31:149:0.926:2
chr19	4511365	rs116973517	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,75:31:173:0.434:2	0/1:103,80:31:183:0.437:2	./.	./.	./.	./.	./.	./.
chr19	4511453	rs7255187	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,155:32:155:1.00:2	0/1:0,94:31:94:1.00:2	0/1:0,23:32:23:1.00:2	0/1:70,78:32:148:0.527:2	0/1:83,76:31:159:0.478:2	0/1:0,135:31:135:1.00:2	0/1:0,158:32:158:1.00:2	0/1:0,142:31:142:1.00:2	0/1:0,141:32:142:1.00:2	0/1:0,128:32:128:1.00:2	0/1:0,143:31:143:1.00:2
chr19	4511479	rs138464610	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:121,9:31:130:0.069:2	0/1:83,4:30:87:0.046:2	./.	0/1:163,4:32:167:0.024:2	0/1:160,5:28:165:0.030:2	0/1:138,11:30:149:0.074:2	0/1:166,9:31:176:0.051:2	0/1:153,10:32:163:0.061:2	0/1:138,7:34:145:0.048:2	0/1:103,8:30:111:0.072:2	0/1:133,14:30:147:0.095:2
chr19	4511491	rs10423324	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:104,16:31:120:0.133:2	0/1:79,10:32:89:0.112:2	0/1:20,3:31:23:0.130:2	0/1:142,14:30:156:0.090:2	0/1:145,18:30:164:0.110:2	0/1:128,28:31:156:0.179:2	0/1:146,22:32:169:0.131:2	0/1:143,16:31:159:0.101:2	0/1:134,15:33:150:0.101:2	0/1:102,16:30:119:0.136:2	0/1:123,30:31:153:0.196:2
chr19	4511494	rs201001883	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:147,5:30:153:0.033:2	0/1:159,5:30:164:0.030:2	./.	./.	./.	./.	./.	./.
chr19	4511525	rs7256712	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,83:29:83:1.00:2	0/1:0,70:29:70:1.00:2	0/1:0,18:30:18:1.00:2	0/1:72,81:29:153:0.529:2	0/1:75,75:29:150:0.500:2	0/1:0,127:29:127:1.00:2	0/1:0,149:29:149:1.00:2	0/1:1,129:29:130:0.992:2	0/1:0,130:30:130:1.00:2	0/1:1,116:29:117:0.991:2	0/1:0,126:29:126:1.00:2
chr19	4511647	rs7256387	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:32:87:1.00:2	0/1:1,61:32:62:0.984:2	0/1:0,14:32:14:1.00:2	0/1:70,87:32:157:0.554:2	0/1:56,102:32:158:0.646:2	0/1:1,121:31:122:0.992:2	0/1:0,132:32:132:1.00:2	0/1:0,127:32:127:1.00:2	0/1:1,94:33:95:0.989:2	0/1:0,99:32:99:1.00:2	0/1:0,94:32:94:1.00:2
chr19	4511677	rs28546567	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,5:26:75:0.067:2	./.	./.	./.	./.	0/1:93,9:26:102:0.088:2	./.	./.	0/1:69,4:30:73:0.055:2	./.	./.
chr19	4511725	rs73920825	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:32:28:1.00:2	0/1:1,13:32:14:0.929:2	0/1:0,4:32:4:1.00:2	0/1:63,53:32:116:0.457:2	0/1:61,29:32:90:0.322:2	0/1:0,34:32:34:1.00:2	0/1:0,39:32:39:1.00:2	0/1:3,44:32:48:0.936:2	0/1:0,13:33:13:1.00:2	0/1:1,31:31:32:0.969:2	0/1:0,39:32:39:1.00:2
chr19	4511730	rs62115190	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:29:44:1.00:2	0/1:1,28:29:29:0.966:2	0/1:0,7:29:7:1.00:2	0/1:69,62:29:131:0.473:2	0/1:59,38:29:97:0.392:2	0/1:0,60:29:60:1.00:2	0/1:0,65:29:65:1.00:2	0/1:3,92:29:95:0.968:2	0/1:0,31:29:31:1.00:2	0/1:0,56:29:56:1.00:2	0/1:0,46:29:46:1.00:2
chr19	4511737	rs57610751	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,23:32:49:0.469:2	0/1:19,18:31:37:0.486:2	0/1:3,10:33:13:0.769:2	0/1:116,30:32:146:0.205:2	0/1:98,12:32:110:0.109:2	0/1:42,40:31:82:0.488:2	0/1:30,56:31:86:0.651:2	0/1:18,99:32:117:0.846:2	0/1:28,20:32:48:0.417:2	0/1:26,43:32:69:0.623:2	0/1:26,32:32:58:0.552:2
chr19	4511746	rs62115192	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:47,9:31:56:0.161:2	0/1:32,12:32:44:0.273:2	./.	./.	0/1:118,11:32:129:0.085:2	0/1:69,32:32:101:0.317:2	0/1:97,17:31:114:0.149:2	./.	0/1:40,23:32:63:0.365:2	0/1:70,11:32:81:0.136:2	0/1:68,11:32:79:0.139:2
chr19	4511791	rs62115193	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:85,38:30:123:0.309:2	0/1:61,28:30:89:0.315:2	./.	./.	0/1:141,32:30:174:0.185:2	0/1:88,66:30:154:0.429:2	0/1:145,25:29:171:0.147:2	./.	0/1:83,71:31:154:0.461:2	0/1:139,27:31:166:0.163:2	0/1:128,30:30:158:0.190:2
chr19	4511830	rs7257142	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:113,59:29:172:0.343:2	0/1:84,39:30:123:0.317:2	0/1:20,14:30:34:0.412:2	0/1:105,68:30:173:0.393:2	0/1:108,79:30:187:0.422:2	0/1:95,79:30:174:0.454:2	0/1:117,75:30:192:0.391:2	0/1:114,69:31:184:0.377:2	0/1:96,80:30:176:0.455:2	0/1:106,73:29:179:0.408:2	0/1:114,64:29:178:0.360:2
chr19	4511859	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,5:27:172:0.029:2	./.
chr19	4511860	rs79731243	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:142,31:30:173:0.179:2	./.	./.	./.	0/1:127,34:30:161:0.211:2	./.	0/1:150,20:30:170:0.118:2	./.
chr19	4511872	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,5:30:152:0.033:2	./.
chr19	4511890	rs200897749	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:138,12:29:150:0.080:2	0/1:125,15:32:140:0.107:2	./.	./.	./.	./.	./.	./.
chr19	4511908	rs10423606	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:79,31:33:110:0.282:2	0/1:67,17:33:84:0.202:2	0/1:20,4:32:24:0.167:2	0/1:96,32:32:128:0.250:2	0/1:69,48:32:117:0.410:2	./.	0/1:31,53:32:84:0.631:2	0/1:35,54:32:89:0.607:2	./.	0/1:94,25:33:119:0.210:2	0/1:82,31:33:113:0.274:2
chr19	4511920	rs28460600	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:118,5:26:123:0.041:2	0/1:85,7:26:92:0.076:2	./.	0/1:44,78:30:122:0.639:2	0/1:59,59:30:118:0.500:2	0/1:155,12:27:167:0.072:2	0/1:76,22:28:98:0.224:2	0/1:70,19:29:89:0.213:2	0/1:152,18:29:170:0.106:2	0/1:110,11:30:121:0.091:2	0/1:113,8:27:121:0.066:2
chr19	4511927	rs10422025	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:75,41:31:116:0.353:2	0/1:60,25:30:85:0.294:2	0/1:13,5:32:18:0.278:2	0/1:79,43:30:122:0.352:2	0/1:57,51:30:109:0.472:2	./.	0/1:0,70:30:70:1.00:2	0/1:1,62:30:64:0.984:2	0/1:154,6:31:160:0.038:2	0/1:85,22:30:107:0.206:2	0/1:76,39:29:115:0.339:2
chr19	4511929	rs10424401	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:79,40:29:119:0.336:2	0/1:65,24:29:89:0.270:2	0/1:13,5:32:18:0.278:2	0/1:81,45:28:126:0.357:2	0/1:66,50:28:116:0.431:2	./.	0/1:1,68:28:70:0.986:2	0/1:2,62:28:65:0.969:2	0/1:154,6:32:160:0.038:2	0/1:90,23:29:113:0.204:2	0/1:74,39:26:113:0.345:2
chr19	4511955	rs7260518	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,123:30:125:0.984:2	0/1:1,115:28:116:0.991:2	0/1:0,20:29:20:1.00:2	0/1:1,137:30:138:0.993:2	0/1:2,131:30:133:0.985:2	0/1:1,163:30:164:0.994:2	0/1:1,125:30:126:0.992:2	0/1:0,109:30:109:1.00:2	0/1:0,165:32:165:1.00:2	0/1:0,120:30:120:1.00:2	0/1:1,128:30:129:0.992:2
chr19	4512156	rs112356938	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,6:30:184:0.033:2	./.	./.	./.	./.
chr19	4512169	rs113575971	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:137,4:33:141:0.028:2	./.	./.	./.	./.	./.	0/1:184,9:26:193:0.047:2	./.	./.	./.	./.
chr19	4512409	rs10410197	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,44:32:87:0.506:2	0/1:47,43:32:91:0.478:2	./.	./.	./.	./.	./.	./.
chr19	4512424	rs61730735	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:116,4:34:120:0.033:2	./.	./.	./.	./.	./.	./.
chr19	4512438	rs61730734	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:118,6:29:124:0.048:2	./.	./.	./.	0/1:86,4:32:90:0.044:2	./.	0/1:86,6:32:92:0.065:2
chr19	4512439	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:120,5:26:125:0.040:2	./.	./.	./.	./.	./.	./.
chr19	4512514	rs7259625	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:80,5:32:85:0.059:2	./.	./.	0/1:52,46:33:98:0.469:2	0/1:48,46:31:94:0.489:2	0/1:38,49:32:87:0.563:2	0/1:57,54:33:111:0.486:2	0/1:102,8:32:110:0.073:2	0/1:90,5:33:95:0.053:2	0/1:82,4:34:86:0.047:2	0/1:47,39:32:86:0.453:2
chr19	4512553	rs143246362	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:31:80:0.050:2	./.	./.	./.	./.	./.
chr19	4512613	rs74327986	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,6:29:73:0.082:2	0/1:86,16:29:102:0.157:2	./.	./.	./.	./.	./.	./.
chr19	4512629	rs146679364	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,4:32:68:0.059:2	0/1:77,12:32:89:0.135:2	./.	./.	./.	./.	./.	./.
chr19	4512636	rs140230284	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,3:34:63:0.048:2	0/1:71,9:35:80:0.113:2	./.	./.	./.	./.	./.	./.
chr19	4512669	rs55901236	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,29:28:81:0.358:2	0/1:26,36:30:62:0.581:2	0/1:0,14:29:14:1.00:2	0/1:1,56:28:57:0.982:2	./.	0/1:74,56:29:130:0.431:2	0/1:61,50:29:111:0.450:2	0/1:51,43:28:94:0.457:2	0/1:1,126:30:127:0.992:2	0/1:76,55:29:131:0.420:2	0/1:43,65:28:109:0.602:2
chr19	4512748	rs112063407	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,82:30:154:0.532:2	0/1:58,48:30:106:0.453:2	0/1:60,59:30:119:0.496:2	./.	0/1:64,54:30:118:0.458:2	0/1:66,53:30:119:0.445:2
chr19	4512945	rs75031432	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:138,6:31:144:0.042:2	0/1:181,6:32:187:0.032:2	./.	./.	0/1:182,5:31:187:0.027:2	./.	./.	./.
chr19	4512946	rs79662071	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:140,6:31:146:0.041:2	0/1:184,6:31:190:0.032:2	./.	./.	0/1:182,5:32:187:0.027:2	./.	./.	./.
chr19	4513044	rs56366613	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:149,34:32:183:0.186:2	0/1:108,29:31:137:0.212:2	0/1:30,9:32:39:0.231:2	0/1:136,37:31:173:0.214:2	0/1:146,38:32:184:0.207:2	0/1:152,25:32:178:0.141:2	0/1:162,25:32:187:0.134:2	0/1:152,35:31:187:0.187:2	0/1:167,23:32:190:0.121:2	0/1:148,29:32:177:0.164:2	0/1:145,41:33:186:0.220:2
chr19	4513045	rs12327614	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:146,36:30:182:0.198:2	0/1:108,29:31:137:0.212:2	0/1:30,9:32:39:0.231:2	0/1:140,37:32:177:0.209:2	0/1:149,38:32:187:0.203:2	0/1:150,26:31:177:0.148:2	0/1:162,25:32:187:0.134:2	0/1:153,35:31:188:0.186:2	0/1:168,23:33:191:0.120:2	0/1:149,29:32:178:0.163:2	0/1:147,41:33:188:0.218:2
chr19	4513143	rs4807595	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,108:31:160:0.675:2	0/1:31,65:31:96:0.677:2	0/1:9,21:31:30:0.700:2	0/1:32,114:31:146:0.781:2	0/1:33,137:31:170:0.806:2	0/1:48,123:31:171:0.719:2	0/1:35,134:30:169:0.793:2	0/1:43,137:32:180:0.761:2	0/1:42,131:32:173:0.757:2	0/1:40,130:32:170:0.765:2	0/1:52,119:32:171:0.696:2
chr19	4513144	rs4807596	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,108:32:160:0.675:2	0/1:30,65:30:95:0.684:2	0/1:9,21:31:30:0.700:2	0/1:31,114:31:145:0.786:2	0/1:32,136:31:169:0.810:2	0/1:47,123:31:170:0.724:2	0/1:35,133:31:168:0.792:2	0/1:44,136:31:180:0.756:2	0/1:42,131:32:173:0.757:2	0/1:39,131:32:170:0.771:2	0/1:52,118:32:171:0.694:2
chr19	4513559	rs4807597	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:29:29:1.00:2	0/1:0,16:28:16:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,33:28:33:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,24:29:24:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,41:29:41:1.00:2	0/1:0,14:28:14:1.00:2	0/1:0,27:28:27:1.00:2
chr19	4525046	rs1610090	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,21:30:21:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,3:28:3:1.00:2	0/1:0,56:30:56:1.00:2	0/1:0,36:28:36:1.00:2	0/1:58,30:30:88:0.341:2	0/1:0,35:30:35:1.00:2	0/1:0,41:30:41:1.00:2	0/1:57,16:31:73:0.219:2	0/1:41,23:30:64:0.359:2	0/1:0,28:29:28:1.00:2
chr19	4534014	rs11085080	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,24:31:61:0.393:2	./.	./.	./.	./.	./.	./.
chr19	4538599	rs966384	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:31:18:0.500:2	./.	./.	./.	0/1:7,3:30:10:0.300:2	./.	./.	0/1:9,6:32:15:0.400:2
chr19	4546213	rs111311618	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,11:29:21:0.524:2	./.	./.	./.	./.	./.
chr19	4550183	rs142864702	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,81:29:169:0.479:2	./.	./.	./.	./.	./.	./.	./.
chr19	4555508	rs372425355	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,33:31:87:0.379:2	./.	./.	./.
chr19	4556055	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,36:29:93:0.387:2	./.	./.	./.	./.	./.	./.	./.
chr19	4558431	rs2304213	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	0/1:0,3:33:3:1.00:2	./.
chr19	4652822	rs1060555	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,12:31:26:0.462:2	0/1:21,17:32:38:0.447:2	0/1:23,23:33:46:0.500:2	./.	./.
chr19	4653163	rs143839515	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.	./.
chr19	4653308	rs112877986	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,7:27:54:0.130:2	./.	./.
chr19	4653328	rs72620519	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,10:31:72:0.139:2	./.	./.
chr19	4653351	rs111777530	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,37:31:112:0.330:2	0/1:69,9:33:78:0.115:2	./.	./.
chr19	4653370	rs4806994	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,49:32:132:0.371:2	0/1:2,81:32:83:0.976:2	./.	0/1:2,101:32:103:0.981:2	0/1:5,100:32:105:0.952:2	0/1:0,73:33:73:1.00:2	0/1:82,78:32:160:0.488:2	./.
chr19	4653420	rs9783964	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,18:32:48:0.375:2	0/1:32,11:30:43:0.256:2	0/1:29,6:33:35:0.171:2	./.	./.
chr19	4653903	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:34:3:0.667:2	./.	./.	./.	./.	./.	./.	./.
chr19	4658047	rs12683	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,19:29:44:0.432:2	./.	./.	./.
chr19	4670236	rs10401515	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,3:32:19:0.158:2	./.	./.
chr19	4676583	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,11:12:45:0.244:2	./.	./.	./.	./.	./.	./.	./.
chr19	4793430	rs142949631	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,28:32:68:0.412:2	./.	./.	./.	./.	./.	./.	./.
chr19	4794257	rs11085099	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,27:31:52:0.519:2	0/1:17,8:28:25:0.320:2	0/1:0,4:32:4:1.00:2	0/1:23,26:30:49:0.531:2	0/1:36,37:29:73:0.507:2	./.	0/1:0,65:30:65:1.00:2	0/1:29,35:30:64:0.547:2	0/1:36,40:30:76:0.526:2	0/1:0,53:30:53:1.00:2	0/1:1,59:30:60:0.983:2
chr19	4795163	rs141938232	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,36:32:69:0.522:2	./.	./.	./.	./.	./.	./.	./.
chr19	4795194	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,6:29:38:0.158:2	./.
chr19	4795289	rs1044386	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,29:29:50:0.580:2	0/1:7,14:31:21:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,27:29:55:0.500:2
chr19	4795342	rs1044409	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,22:32:45:0.489:2	0/1:9,9:31:18:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,26:31:44:0.591:2
chr19	4816719	rs2292151	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,28:32:57:0.491:2	0/1:14,16:32:30:0.533:2	./.	./.	./.	./.	./.	./.	0/1:32,35:33:67:0.522:2	./.	./.
chr19	4818378	rs7255265	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,15:29:15:1.00:2	0/1:0,11:30:11:1.00:2	./.	0/1:24,12:28:36:0.333:2	./.	0/1:0,42:28:42:1.00:2	./.	0/1:22,25:29:47:0.532:2	0/1:14,15:31:29:0.517:2	0/1:23,14:28:37:0.378:2	0/1:12,14:31:26:0.538:2
chr19	4818487	rs10415014	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,5:33:29:0.172:2	0/1:9,8:32:17:0.471:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	4818488	rs10415015	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,5:32:28:0.179:2	0/1:10,8:32:18:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	4844790	rs34070230	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,36:33:74:0.486:2	./.	./.	./.	./.	./.	./.
chr19	4847713	rs9973235	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:31:62:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,92:31:92:1.00:2	0/1:81,51:32:132:0.386:2	0/1:0,44:32:44:1.00:2	0/1:0,89:32:89:1.00:2	0/1:45,34:32:79:0.430:2	0/1:0,47:31:47:1.00:2	0/1:25,11:30:36:0.306:2
chr19	4847868	rs10406652	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,70:31:145:0.483:2	./.	./.	./.
chr19	4847874	rs9304915	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:29:63:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,112:30:112:1.00:2	0/1:1,146:29:147:0.993:2	0/1:67,73:30:140:0.521:2	0/1:0,132:29:132:1.00:2	0/1:0,144:29:145:1.00:2	0/1:55,74:30:129:0.574:2	0/1:1,73:30:74:0.986:2	0/1:49,43:30:92:0.467:2
chr19	4852106	rs2271058	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:32:31:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,53:32:53:1.00:2	0/1:1,82:31:83:0.988:2	0/1:38,39:32:77:0.506:2	0/1:0,49:33:49:1.00:2	0/1:0,89:32:89:1.00:2	0/1:23,36:34:59:0.610:2	0/1:0,42:33:42:1.00:2	0/1:13,13:31:26:0.500:2
chr19	4852137	rs1055919	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,20:31:33:0.606:2	0/1:4,7:32:11:0.636:2	0/1:0,11:33:11:1.00:2	0/1:29,23:32:52:0.442:2	0/1:37,41:31:78:0.526:2	0/1:41,39:31:80:0.488:2	0/1:0,49:31:49:1.00:2	0/1:38,40:32:78:0.513:2	0/1:23,38:32:61:0.623:2	0/1:0,44:32:44:1.00:2	./.
chr19	4852305	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,8:31:11:0.727:2	0/1:4,5:31:9:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	4859631	rs11552104	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:29:9:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	4859937	rs8289	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:31:46:1.00:2	0/1:2,33:30:35:0.943:2	0/1:5,12:30:17:0.706:2	0/1:35,46:31:81:0.568:2	0/1:0,140:30:140:1.00:2	0/1:0,89:31:89:1.00:2	./.	0/1:51,46:30:97:0.474:2	0/1:44,31:31:75:0.413:2	0/1:27,26:30:53:0.491:2	0/1:28,38:30:66:0.576:2
chr19	4902754	rs2779168	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:51,44:31:95:0.463:2	0/1:31,29:32:60:0.483:2	0/1:2,5:29:7:0.714:2	./.	0/1:2,71:31:73:0.973:2	./.	0/1:77,44:32:121:0.364:2	./.	./.	0/1:55,48:31:103:0.466:2	./.
chr19	4910889	rs2261988	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,4:33:13:0.308:2	0/1:53,41:31:94:0.436:2	./.	0/1:0,84:32:84:1.00:2	0/1:54,65:32:119:0.546:2	./.	./.	0/1:0,83:32:83:1.00:2	./.
chr19	4910924	rs2261986	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,35:31:87:0.402:2	./.	0/1:0,67:30:67:1.00:2	0/1:56,42:31:98:0.429:2	./.	./.	0/1:0,84:31:84:1.00:2	./.
chr19	4929413	rs2251520	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,6:32:9:0.667:2	0/1:0,58:31:58:1.00:2	0/1:63,27:31:90:0.300:2	0/1:2,72:32:74:0.973:2	./.	0/1:62,23:31:85:0.271:2	0/1:0,50:32:50:1.00:2	./.	./.
chr19	4929473	rs2123731	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,12:32:20:0.600:2	0/1:0,107:32:107:1.00:2	0/1:117,77:31:194:0.397:2	0/1:2,130:31:132:0.985:2	./.	0/1:119,66:31:185:0.357:2	0/1:0,123:32:123:1.00:2	./.	./.
chr19	4930838	rs2307205	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,23:31:38:0.605:2	0/1:7,14:32:21:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	4941573	rs141404328	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,17:31:59:0.288:2	./.	./.	./.	./.	./.	./.
chr19	4944190	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:146,4:32:150:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr19	4944205	rs17885791	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:29:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	4945914	rs2250982	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,6:32:16:0.375:2	0/1:73,46:32:119:0.387:2	0/1:0,96:31:96:1.00:2	0/1:0,120:32:120:1.00:2	0/1:71,57:32:128:0.445:2	0/1:4,131:32:135:0.970:2	0/1:0,84:33:85:1.00:2	0/1:57,31:31:88:0.352:2	0/1:39,38:30:77:0.494:2
chr19	4945917	rs2250981	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,43:30:96:0.448:2	0/1:0,120:31:120:1.00:2	0/1:69,57:31:126:0.452:2	0/1:3,131:31:134:0.978:2	0/1:44,42:31:86:0.488:2	./.	0/1:39,36:31:75:0.480:2
chr19	4945974	rs2250978	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,42:26:43:0.977:2	0/1:0,30:24:30:1.00:2	0/1:0,6:27:6:1.00:2	0/1:0,52:26:52:1.00:2	0/1:0,34:25:34:1.00:2	0/1:44,12:23:56:0.214:2	0/1:0,42:24:42:1.00:2	0/1:0,56:26:56:1.00:2	0/1:0,34:25:34:1.00:2	0/1:0,44:25:44:1.00:2	0/1:0,37:24:37:1.00:2
chr19	4950770	rs2307213	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:34,37:30:71:0.521:2	0/1:20,11:30:31:0.355:2	./.	0/1:49,37:30:86:0.430:2	./.	0/1:67,30:30:97:0.309:2	0/1:79,43:31:122:0.352:2	0/1:54,38:31:93:0.413:2	./.	./.	./.
chr19	4954396	rs376024928	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:31:107:0.037:2	./.	./.	./.	./.	./.
chr19	4954454	rs2247238	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,62:29:130:0.477:2	./.	0/1:73,64:29:137:0.467:2	./.	0/1:50,63:30:113:0.558:2	0/1:61,68:30:129:0.527:2	0/1:49,46:29:95:0.484:2
chr19	4954455	rs17883331	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,9:28:18:0.500:2	0/1:68,63:30:131:0.481:2	0/1:70,62:30:132:0.470:2	./.	./.	./.	0/1:68,45:31:113:0.398:2	./.	./.
chr19	4954693	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,6:32:49:0.122:2	./.	./.	./.	./.	./.	./.
chr19	5041178	rs2240678	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:29:50:1.00:2	0/1:0,36:28:36:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,79:29:79:1.00:2	0/1:1,66:28:67:0.985:2	0/1:25,27:29:52:0.519:2	0/1:0,71:28:71:1.00:2	0/1:32,41:29:73:0.562:2	0/1:0,75:30:75:1.00:2	0/1:0,42:29:42:1.00:2	0/1:1,54:29:55:0.982:2
chr19	5047551	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:32:101:0.040:2	./.	./.
chr19	5047564	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:31:110:0.036:2	./.	./.	./.	./.	./.
chr19	5110794	rs2613739	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,3:32:3:1.00:2	0/1:0,4:25:4:1.00:2	./.	0/1:1,2:31:3:0.667:2	0/1:0,3:28:3:1.00:2	./.	./.	./.	0/1:4,4:30:8:0.500:2	0/1:0,2:33:2:1.00:2	./.
chr19	5131955	rs45459493	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,15:32:45:0.333:2	./.	./.	./.	./.
chr19	5135392	rs2620836	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,6:35:6:1.00:2	0/1:0,65:33:65:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,45:33:45:1.00:2	0/1:1,35:33:36:0.972:2	0/1:0,71:33:71:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,40:33:40:1.00:2
chr19	5137298	rs17179181	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:22,13:32:35:0.371:2	0/1:10,9:31:19:0.474:2	./.	0/1:35,21:31:57:0.375:2	./.	./.	./.	./.	./.	./.	./.
chr19	5151356	rs200961372	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,4:29:12:0.333:2	./.	./.	./.	./.	./.	./.	./.
chr19	5206775	rs1143700	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:31:38:1.00:2	0/1:0,16:28:16:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,51:30:51:1.00:2	0/1:39,25:30:64:0.391:2	0/1:26,23:30:50:0.469:2	0/1:0,55:29:55:1.00:2	0/1:0,54:30:54:1.00:2	0/1:30,19:34:49:0.388:2	0/1:0,29:30:29:1.00:2	0/1:0,44:28:44:1.00:2
chr19	5210723	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:33:79:0.051:2	./.
chr19	5210762	rs1143699	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,33:30:60:0.550:2	0/1:29,16:31:45:0.356:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	5210782	rs1143698	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:22,30:30:52:0.577:2	0/1:26,16:31:42:0.381:2	./.	0/1:51,57:30:108:0.528:2	./.	./.	0/1:30,30:31:60:0.500:2	0/1:49,51:31:100:0.510:2	./.	./.	0/1:19,25:31:44:0.568:2
chr19	5212380	rs1064300	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,36:30:36:1.00:2	0/1:0,28:31:28:1.00:2	./.	./.	./.	0/1:43,41:29:84:0.488:2	./.	0/1:42,69:30:111:0.622:2	./.	0/1:0,61:30:61:1.00:2	0/1:24,36:30:60:0.600:2
chr19	5212482	rs2230611	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,13:32:37:0.351:2	0/1:16,11:30:27:0.407:2	./.	./.	./.	0/1:32,33:30:65:0.508:2	./.	./.	./.	./.	0/1:27,18:31:45:0.400:2
chr19	5214697	rs4807697	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,60:30:61:0.984:2	0/1:0,24:29:24:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,82:30:82:1.00:2	0/1:0,116:30:116:1.00:2	0/1:0,69:30:69:1.00:2	0/1:0,88:30:88:1.00:2	0/1:0,90:29:90:1.00:2	0/1:1,96:31:97:0.990:2	0/1:0,91:30:91:1.00:2	0/1:0,56:30:56:1.00:2
chr19	5218836	rs73543273	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:26,22:31:48:0.458:2	0/1:11,16:31:27:0.593:2	./.	./.	./.	./.	./.	0/1:22,20:30:43:0.476:2	./.	./.	./.
chr19	5218842	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:34:45:0.089:2	./.	./.
chr19	5220144	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,4:31:17:0.235:2	./.	./.	./.
chr19	5223115	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,5:28:12:0.417:2	./.	./.	./.	./.	./.
chr19	5225802	rs10415592	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,61:33:140:0.436:2	./.	./.	0/1:101,91:32:192:0.474:2	./.	./.	./.	./.
chr19	5231399	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,32:31:72:0.444:2	./.	./.	./.	./.	./.	./.
chr19	5244233	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,3:32:35:0.086:2	./.	./.	./.
chr19	5245977	rs61757816	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,32:32:58:0.552:2	./.
chr19	5262990	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:34:159:0.025:2	./.	./.
chr19	5273571	rs1141371	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,7:31:14:0.500:2	0/1:0,86:30:86:1.00:2	./.	./.	./.	0/1:56,52:30:108:0.481:2	0/1:51,52:30:103:0.505:2	0/1:36,34:31:70:0.486:2	0/1:42,26:30:68:0.382:2
chr19	5455611	rs2240743	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,44:30:45:1.00:2	./.	0/1:0,44:30:44:1.00:2	0/1:10,16:30:26:0.615:2	0/1:10,16:30:26:0.615:2	0/1:8,24:32:32:0.750:2	0/1:13,14:29:27:0.519:2	0/1:0,27:30:27:1.00:2
chr19	5455735	rs2240744	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:29:12:0.667:2	./.	0/1:0,10:30:10:1.00:2	0/1:6,3:31:9:0.333:2	./.	0/1:0,8:31:8:1.00:2	./.	0/1:0,8:31:8:1.00:2
chr19	5455796	rs420325	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:30:8:1.00:2	./.	0/1:0,9:28:9:1.00:2	0/1:6,3:29:9:0.333:2	0/1:3,11:29:14:0.786:2	0/1:0,9:31:9:1.00:2	./.	0/1:0,14:30:14:1.00:2
chr19	5455800	rs2240745	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:28:8:0.750:2	./.	0/1:0,9:30:9:1.00:2	0/1:6,3:31:9:0.333:2	./.	0/1:0,9:31:9:1.00:2	./.	./.
chr19	5455971	rs8103406	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:29:10:1.00:2	./.	0/1:0,7:30:7:1.00:2	./.	0/1:0,2:30:2:1.00:2	./.	0/1:0,2:32:2:1.00:2	0/1:0,8:30:8:1.00:2
chr19	5455976	rs61740902	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:30:10:0.300:2	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	0/1:0,2:31:2:1.00:2	./.
chr19	5455978	rs8107825	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:26:9:1.00:2	./.	0/1:0,7:30:7:1.00:2	./.	0/1:0,2:29:2:1.00:2	./.	0/1:0,2:28:2:1.00:2	0/1:0,4:23:4:1.00:2
chr19	5455990	rs17304380	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:31:5:1.00:2
chr19	5456450	rs8111108	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:30:7:0.429:2	0/1:0,77:29:77:1.00:2	0/1:56,45:29:101:0.446:2	0/1:0,91:29:91:1.00:2	0/1:60,61:30:121:0.504:2	0/1:55,57:29:112:0.509:2	0/1:39,39:30:78:0.500:2	0/1:27,31:29:58:0.534:2	0/1:1,57:29:58:0.983:2
chr19	5587268	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,5:17:14:0.357:2	./.	./.
chr19	5587279	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,8:20:31:0.258:2	./.	./.	./.	./.	./.	./.	./.	0/1:9,6:17:15:0.400:2	./.	./.
chr19	5587710	rs376090920	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,9:28:34:0.265:2	0/1:27,4:30:31:0.129:2	0/1:29,3:31:32:0.094:2	./.	0/1:31,9:30:40:0.225:2	./.	0/1:14,3:30:17:0.176:2	./.
chr19	5591735	rs2285963	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,22:31:50:0.440:2	0/1:23,15:30:38:0.395:2	./.	./.	./.	./.	./.
chr19	5598801	rs75051036	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,85:30:193:0.443:2	./.	./.
chr19	5604875	rs61748936	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,20:32:39:0.513:2	./.
chr19	5610045	rs806706	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:17,15:31:32:0.469:2	0/1:16,14:32:30:0.467:2	./.	0/1:49,22:30:71:0.310:2	./.	./.	./.	./.	./.	./.	./.
chr19	5611538	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,41:32:196:0.209:2	./.	./.
chr19	5621328	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:134,4:32:138:0.029:2	./.	./.	./.	./.	./.	./.
chr19	5649103	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,44:32:196:0.224:2	./.	./.
chr19	5668176	rs76836312	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,9:34:16:0.563:2	./.	./.
chr19	5691357	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:117,4:31:121:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr19	5691396	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:127,4:31:131:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr19	5691414	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,4:32:115:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr19	5691574	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,4:33:36:0.111:2	./.	./.	./.	./.	./.	./.
chr19	5693616	rs35804229	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:106,55:22:171:0.342:2	./.	./.	./.	./.	./.	./.
chr19	5696146	rs3745624	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,16:30:36:0.444:2	./.	./.	./.	0/1:14,23:31:37:0.622:2	./.	0/1:11,23:31:34:0.676:2	0/1:0,16:29:16:1.00:2
chr19	5711930	rs11085147	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,22:33:33:0.667:2	0/1:14,14:32:28:0.500:2	./.	./.	./.	0/1:7,19:31:26:0.731:2	0/1:13,25:32:38:0.658:2	./.	./.	./.	./.
chr19	5748208	rs201831364	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,72:30:130:0.554:2	./.	./.	./.
chr19	5754174	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,4:29:82:0.049:2	./.	./.	./.	./.	./.	./.	./.
chr19	5766090	rs2446200	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:33:56:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,70:32:70:1.00:2	0/1:40,32:32:72:0.444:2	0/1:0,98:32:98:1.00:2	0/1:2,68:32:70:0.971:2	0/1:1,104:32:105:0.990:2	0/1:0,87:34:87:1.00:2	0/1:33,30:31:63:0.476:2	0/1:0,92:32:92:1.00:2
chr19	5772950	rs61180947	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,15:33:34:0.441:2	0/1:21,15:32:36:0.417:2	./.	0/1:28,31:33:59:0.525:2	0/1:12,16:30:28:0.571:2	0/1:18,17:32:35:0.486:2	0/1:40,3:33:43:0.070:2	./.	./.	0/1:16,18:33:34:0.529:2	0/1:26,22:33:48:0.458:2
chr19	5776201	rs2290778	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,55:30:106:0.519:2	./.	./.
chr19	5778517	rs2305925	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,6:31:26:0.231:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	5783634	rs2446210	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,23:31:54:0.426:2	./.	./.
chr19	5784314	rs10410693	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:32:5:0.800:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	5784370	rs2446212	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,30:31:65:0.462:2	./.	./.
chr19	5786799	rs151277031	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,29:31:67:0.433:2	./.
chr19	5786815	rs10811	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:32:11:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	5831577	rs61740561	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:158,13:30:172:0.076:2	./.	0/1:21,3:33:24:0.125:2	0/1:104,83:32:187:0.444:2	0/1:180,11:30:191:0.058:2	0/1:180,11:32:191:0.058:2	0/1:87,105:32:193:0.547:2	0/1:184,4:33:189:0.021:2	0/1:191,7:32:198:0.035:2	0/1:181,10:31:191:0.052:2	0/1:145,13:32:159:0.082:2
chr19	5831602	rs61739552	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:124,66:32:190:0.347:2	./.	./.	0/1:120,72:32:192:0.375:2	./.	./.	./.	./.
chr19	5831608	rs61739551	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:165,10:33:175:0.057:2	0/1:137,9:32:146:0.062:2	./.	0/1:166,19:32:185:0.103:2	0/1:176,13:31:189:0.069:2	0/1:174,11:29:185:0.059:2	0/1:116,73:30:189:0.386:2	./.	./.	./.	0/1:167,10:31:179:0.056:2
chr19	5831672	rs61147939	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,21:30:77:0.273:2	./.	./.	./.	./.	./.	0/1:160,33:28:193:0.171:2	./.	./.
chr19	5831700	rs62110261	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:152,28:30:180:0.156:2	0/1:149,37:32:186:0.199:2	0/1:52,18:30:70:0.257:2	0/1:148,43:31:191:0.225:2	0/1:148,41:30:189:0.217:2	0/1:121,57:30:178:0.320:2	0/1:115,70:31:185:0.378:2	0/1:145,41:31:186:0.220:2	0/1:130,50:32:180:0.278:2	0/1:167,29:31:196:0.148:2	0/1:157,27:30:184:0.147:2
chr19	5831724	rs112313064	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:158,30:29:189:0.160:2	0/1:121,25:29:147:0.171:2	0/1:42,22:29:64:0.344:2	0/1:100,74:29:174:0.425:2	0/1:116,63:29:179:0.352:2	0/1:92,97:29:189:0.513:2	0/1:84,65:30:149:0.436:2	0/1:118,72:29:191:0.379:2	0/1:119,52:30:171:0.304:2	0/1:131,59:29:190:0.311:2	0/1:134,41:28:177:0.234:2
chr19	5831840	rs17855739	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:107,87:31:194:0.448:2	./.	./.	0/1:105,78:31:184:0.426:2	./.	./.	./.
chr19	5831841	rs141349215	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,72:31:184:0.391:2	./.	./.	0/1:106,68:31:174:0.391:2	./.	./.	./.	./.
chr19	5832061	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:79,5:32:84:0.060:2	./.	./.	0/1:80,7:31:88:0.080:2	0/1:104,4:31:108:0.037:2	0/1:78,8:30:86:0.093:2	./.	./.	./.	./.	./.
chr19	5832209	rs778805	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,19:31:19:1.00:2	./.	0/1:89,97:31:186:0.522:2	0/1:76,82:31:158:0.519:2	./.	0/1:91,96:31:187:0.513:2	0/1:75,61:32:136:0.449:2	0/1:57,67:31:124:0.540:2	./.
chr19	5832589	rs9807877	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,28:32:48:0.583:2	0/1:21,11:33:32:0.344:2	./.	0/1:1,38:32:39:0.974:2	0/1:35,8:28:43:0.186:2	./.	0/1:2,27:30:29:0.931:2	./.	./.	0/1:28,32:32:60:0.533:2	0/1:1,53:32:54:0.981:2
chr19	5843784	rs3894326	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,54:31:124:0.435:2	./.	./.	0/1:71,46:31:117:0.393:2	./.	./.	./.
chr19	5843822	rs199931170	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:161,30:29:192:0.157:2	0/1:74,12:31:87:0.140:2	0/1:27,5:31:32:0.156:2	0/1:166,19:29:185:0.103:2	0/1:175,20:30:195:0.103:2	0/1:170,19:31:189:0.101:2	0/1:182,13:32:195:0.067:2	0/1:173,22:32:195:0.113:2	0/1:177,20:33:198:0.102:2	0/1:172,7:32:180:0.039:2	0/1:165,18:31:184:0.098:2
chr19	5843844	rs151218854	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:160,32:32:192:0.167:2	0/1:98,20:31:118:0.169:2	0/1:34,11:33:46:0.244:2	0/1:161,24:32:186:0.130:2	0/1:164,33:32:197:0.168:2	0/1:164,27:33:191:0.141:2	0/1:174,17:32:191:0.089:2	0/1:164,31:31:195:0.159:2	0/1:167,24:33:192:0.126:2	0/1:183,9:33:192:0.047:2	0/1:167,21:30:188:0.112:2
chr19	5843871	rs28381970	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:161,19:31:180:0.106:2	./.	./.	0/1:173,18:32:191:0.094:2	./.	./.	./.	./.
chr19	5843877	rs28381969	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:163,16:31:179:0.089:2	0/1:160,20:32:180:0.111:2	./.	0/1:149,39:30:188:0.207:2	0/1:173,16:31:189:0.085:2	0/1:164,16:31:180:0.089:2	0/1:165,23:31:188:0.122:2	./.	./.	./.	0/1:169,12:31:181:0.066:2
chr19	5843941	rs200332425	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,10:31:84:0.119:2	./.	./.	./.	./.	./.	0/1:159,28:31:188:0.150:2	./.	./.
chr19	5843969	rs778985	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:156,31:31:188:0.166:2	0/1:136,38:31:174:0.218:2	0/1:63,16:31:79:0.203:2	0/1:150,40:30:190:0.211:2	0/1:140,48:30:188:0.255:2	0/1:102,74:31:176:0.420:2	0/1:130,58:31:188:0.309:2	0/1:146,40:30:186:0.215:2	0/1:133,44:32:177:0.249:2	0/1:169,23:32:194:0.120:2	0/1:170,19:31:189:0.101:2
chr19	5843993	rs139326855	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:130,26:28:159:0.167:2	0/1:134,37:28:171:0.216:2	0/1:53,15:29:68:0.221:2	0/1:128,54:28:184:0.297:2	0/1:122,44:28:166:0.265:2	0/1:78,95:29:173:0.549:2	0/1:96,62:28:161:0.392:2	0/1:135,54:28:190:0.286:2	0/1:140,40:29:180:0.222:2	0/1:133,35:29:168:0.208:2	0/1:138,25:26:163:0.153:2
chr19	5844119	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:32:170:0.024:2	./.
chr19	5844239	rs28362465	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,9:27:108:0.083:2	./.
chr19	5844330	rs201104904	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,8:28:81:0.100:2	./.	./.	./.	./.	./.
chr19	5844537	rs778986	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,112:30:113:0.991:2	0/1:0,60:30:60:1.00:2	0/1:7,11:31:18:0.611:2	0/1:3,162:30:165:0.982:2	0/1:0,183:30:183:1.00:2	0/1:91,96:30:187:0.513:2	0/1:0,184:30:184:1.00:2	0/1:0,180:29:180:1.00:2	0/1:0,131:30:131:1.00:2	0/1:60,60:31:120:0.500:2	0/1:2,115:30:117:0.983:2
chr19	5844649	rs812936	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,23:31:24:1.00:2	0/1:0,14:30:14:1.00:2	./.	0/1:0,36:29:36:1.00:2	0/1:0,33:31:33:1.00:2	0/1:16,16:30:32:0.500:2	0/1:0,30:29:30:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,32:30:32:1.00:2	0/1:11,13:32:24:0.542:2	0/1:0,26:31:26:1.00:2
chr19	5844792	rs28362459	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,43:30:105:0.413:2	./.	./.	0/1:76,58:30:134:0.433:2	./.	./.	./.
chr19	5866654	rs778983	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,82:32:84:0.976:2	0/1:1,45:32:46:0.978:2	0/1:0,11:33:11:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,136:32:136:1.00:2	0/1:0,123:33:123:1.00:2	0/1:63,46:32:110:0.422:2	0/1:0,72:32:72:1.00:2
chr19	5866718	rs139123543	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:124,7:32:131:0.053:2	./.	./.	0/1:99,6:31:105:0.057:2	./.	./.	./.	./.
chr19	5866724	rs4807054	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,35:30:84:0.417:2	0/1:25,31:30:56:0.554:2	./.	0/1:10,106:30:116:0.914:2	0/1:51,52:30:103:0.505:2	0/1:75,52:30:127:0.409:2	0/1:52,45:30:97:0.464:2	./.	./.	./.	0/1:38,43:29:81:0.531:2
chr19	5866736	rs57100281	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,72:30:76:0.947:2	0/1:2,49:28:51:0.961:2	0/1:0,19:29:19:1.00:2	0/1:1,105:30:106:0.991:2	0/1:0,85:30:85:1.00:2	0/1:1,110:29:111:0.991:2	0/1:1,85:30:86:0.988:2	0/1:3,132:29:135:0.978:2	0/1:0,119:31:119:1.00:2	0/1:153,35:30:189:0.186:2	0/1:0,71:27:71:1.00:2
chr19	5866788	rs147900234	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,16:32:197:0.081:2	./.	./.
chr19	5866816	rs28541500	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:105,92:30:197:0.467:2	0/1:70,59:31:129:0.457:2	0/1:11,21:31:32:0.656:2	0/1:114,81:30:195:0.415:2	0/1:123,70:31:193:0.363:2	0/1:84,109:30:193:0.565:2	0/1:99,97:31:196:0.495:2	0/1:120,78:31:198:0.394:2	0/1:96,101:31:197:0.513:2	0/1:168,22:31:190:0.116:2	0/1:147,44:31:191:0.230:2
chr19	5866840	rs702065	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:98,75:28:174:0.434:2	0/1:84,63:29:147:0.429:2	0/1:31,5:31:36:0.139:2	0/1:87,90:28:177:0.508:2	0/1:88,89:31:177:0.503:2	0/1:67,104:30:171:0.608:2	0/1:62,120:30:184:0.659:2	0/1:97,74:31:171:0.433:2	0/1:124,53:31:178:0.299:2	0/1:136,56:30:193:0.292:2	0/1:110,65:30:175:0.371:2
chr19	5866956	rs200111389	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:188,5:30:194:0.026:2	./.	./.	0/1:171,16:31:188:0.086:2	./.	./.	./.
chr19	5866957	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:180,10:31:190:0.053:2	./.	./.	./.	./.	./.	./.	./.
chr19	5866966	rs4044964	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,10:32:180:0.056:2	./.
chr19	5867009	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:34:181:0.022:2	./.	./.
chr19	5867053	rs111297402	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,77:32:134:0.575:2
chr19	5867086	rs189013086	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,13:32:102:0.127:2	./.
chr19	5867177	rs778970	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,21:32:52:0.404:2	0/1:24,17:31:41:0.415:2	./.	0/1:10,56:30:66:0.848:2	0/1:28,21:30:49:0.429:2	0/1:4,59:30:63:0.937:2	0/1:3,49:30:52:0.942:2	0/1:6,48:31:54:0.889:2	0/1:33,25:32:58:0.431:2	./.	0/1:18,19:28:37:0.514:2
chr19	5867191	rs10412834	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:31:5:1.00:2	./.	./.	./.	./.	./.	0/1:40,40:32:80:0.500:2	./.	./.
chr19	5867247	rs151065401	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,4:30:113:0.036:2	./.	./.	./.	./.	./.	./.
chr19	5867267	rs371889398	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,4:32:113:0.036:2	./.	./.	./.	./.	./.	./.
chr19	5867332	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:28:75:0.053:2	./.
chr19	5867748	rs778971	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,27:31:63:0.429:2	0/1:14,21:31:35:0.600:2	0/1:0,12:30:12:1.00:2	0/1:0,72:30:72:1.00:2	0/1:31,43:30:74:0.581:2	0/1:54,75:29:129:0.581:2	0/1:22,23:30:45:0.511:2	0/1:34,39:30:73:0.534:2	0/1:35,45:32:80:0.563:2	0/1:40,37:30:77:0.481:2	0/1:40,43:30:83:0.518:2
chr19	5908969	rs10404195	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:12,15:29:27:0.556:2	0/1:7,13:30:20:0.650:2	0/1:1,6:27:7:0.857:2	./.	./.	./.	0/1:9,14:29:23:0.609:2	./.	0/1:9,15:29:24:0.625:2	./.	./.
chr19	5915151	rs74174355	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,12:29:23:0.522:2	0/1:11,17:31:28:0.607:2	0/1:9,15:31:24:0.625:2	0/1:13,12:32:25:0.480:2	./.	./.
chr19	5995582	rs2302222	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:34,26:29:60:0.433:2	0/1:16,14:32:30:0.467:2	./.	0/1:51,34:31:86:0.400:2	./.	./.	0/1:58,29:30:87:0.333:2	0/1:3,56:31:59:0.949:2	0/1:49,28:30:77:0.364:2	0/1:26,22:30:48:0.458:2	./.
chr19	6040088	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,14:25:36:0.389:2	./.	./.	./.	./.	./.	./.
chr19	6042059	rs2288846	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,22:30:55:0.400:2	./.	0/1:35,27:30:62:0.435:2	./.	./.	./.	./.	./.
chr19	6141593	rs79266675	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,33:32:80:0.413:2	./.	./.	./.	./.
chr19	6156483	rs4807840	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,115:33:115:1.00:2	0/1:2,70:32:72:0.972:2	./.	0/1:1,150:33:151:0.993:2	0/1:0,91:32:91:1.00:2	0/1:84,81:32:165:0.491:2	0/1:3,84:33:87:0.966:2	0/1:52,57:33:109:0.523:2	0/1:0,142:34:142:1.00:2	0/1:0,129:32:129:1.00:2	0/1:97,87:33:185:0.473:2
chr19	6156510	rs33937754	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:32:11:0.636:2	./.	./.	./.	./.	0/1:65,45:33:110:0.409:2	./.	./.	./.
chr19	6187630	rs138393323	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,35:31:79:0.443:2	./.	./.	./.	./.	./.	./.	./.
chr19	6222353	rs11880101	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,12:30:25:0.480:2	0/1:6,13:31:19:0.684:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	6312222	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:33:114:0.035:2	./.	./.	./.
chr19	6312290	rs72981971	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,4:29:20:0.200:2	./.	./.	./.	./.	0/1:58,56:29:114:0.491:2	./.	0/1:33,35:28:68:0.515:2	./.
chr19	6333476	rs16993553	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:10,19:30:29:0.655:2	0/1:8,6:31:14:0.429:2	0/1:5,3:31:8:0.375:2	./.	0/1:48,37:29:85:0.435:2	./.	./.	./.	./.	./.	./.
chr19	6374890	rs7540	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,38:31:82:0.463:2	./.	./.	./.	0/1:41,40:31:81:0.494:2
chr19	6375831	rs2304198	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,39:31:79:0.494:2	0/1:36,24:33:60:0.400:2	./.	./.	./.	0/1:0,62:32:62:1.00:2
chr19	6381637	rs113337492	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,30:33:30:1.00:2	./.	./.
chr19	6415443	rs1616305	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:27:40:1.00:2	0/1:0,23:26:23:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,72:27:72:1.00:2	0/1:0,72:27:72:1.00:2	0/1:0,78:27:78:1.00:2	0/1:0,76:26:76:1.00:2	0/1:69,40:27:109:0.367:2	0/1:0,66:27:66:1.00:2	0/1:0,56:28:56:1.00:2	0/1:0,55:27:55:1.00:2
chr19	6416607	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,4:32:59:0.068:2	./.	./.	./.	./.	./.	./.	./.
chr19	6419275	rs2305059	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,25:33:54:0.463:2	0/1:40,31:32:72:0.437:2	./.	0/1:26,25:32:51:0.490:2	./.	./.	0/1:22,27:33:49:0.551:2	./.
chr19	6426398	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:162,4:33:166:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr19	6427408	rs3760750	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,34:31:71:0.479:2	0/1:26,39:31:65:0.600:2	./.	./.	./.	./.
chr19	6430106	rs34488963	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,22:32:60:0.367:2	./.	./.	./.	./.	./.	./.
chr19	6432112	rs150991235	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,36:30:80:0.450:2	./.	./.	./.	./.	./.	./.
chr19	6444237	rs200737083	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,17:29:50:0.340:2
chr19	6458240	rs2289784	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:34:5:0.800:2	./.	0/1:17,17:33:34:0.500:2	0/1:26,16:33:42:0.381:2	./.	./.	./.	./.	./.
chr19	6466482	rs348362	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,57:30:59:0.983:2	0/1:0,37:29:37:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,112:29:112:1.00:2	0/1:3,193:29:196:0.985:2	0/1:55,53:29:108:0.491:2	0/1:107,76:30:183:0.415:2	0/1:94,60:29:154:0.390:2	./.	0/1:32,46:29:78:0.590:2	0/1:0,78:29:78:1.00:2
chr19	6466638	rs140748113	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,5:31:16:0.313:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	6468040	rs116930831	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,23:31:56:0.411:2	./.	./.	./.	./.	./.
chr19	6468331	rs62107586	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,100:30:105:0.952:2	0/1:1,55:29:56:0.982:2	0/1:0,17:30:17:1.00:2	0/1:2,118:30:120:0.983:2	0/1:84,76:29:160:0.475:2	./.	0/1:102,80:30:182:0.440:2	0/1:113,72:29:186:0.389:2	./.	0/1:58,47:30:105:0.448:2	0/1:0,150:29:150:1.00:2
chr19	6475402	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,4:33:30:0.133:2	./.
chr19	6477256	rs348398	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,19:27:19:1.00:2	0/1:0,10:29:10:1.00:2	./.	0/1:1,15:29:16:0.938:2	0/1:21,9:24:30:0.300:2	0/1:9,7:22:16:0.438:2	0/1:1,11:24:12:0.917:2	0/1:10,16:26:26:0.615:2	0/1:1,30:27:31:0.968:2	0/1:15,9:28:24:0.375:2	0/1:0,13:25:13:1.00:2
chr19	6479985	rs143124341	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,28:29:63:0.444:2	./.	./.	./.	./.	./.	./.
chr19	6495223	rs61731566	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,39:33:90:0.433:2	./.	./.	./.
chr19	6495415	rs148507956	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:36,4:32:40:0.100:2	./.	./.	./.	0/1:44,3:33:47:0.064:2	./.	./.	./.	./.	./.	./.
chr19	6495418	rs142838372	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:25:40:0.100:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	6495420	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,5:28:42:0.119:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	6495589	rs118102196	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,4:29:16:0.250:2	./.	./.	./.	./.	./.	./.	./.
chr19	6495736	rs2071347	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:32:43:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,13:33:13:1.00:2	0/1:22,14:31:36:0.389:2	0/1:0,23:31:23:1.00:2	0/1:17,23:32:40:0.575:2	0/1:0,9:30:9:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,24:33:24:1.00:2	0/1:1,30:31:31:0.968:2	0/1:0,8:32:8:1.00:2
chr19	6532828	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,13:31:36:0.371:2	./.	./.
chr19	6586268	rs1862511	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,10:32:26:0.385:2	0/1:72,63:30:135:0.467:2	0/1:94,100:30:194:0.515:2	0/1:56,49:31:105:0.467:2	0/1:72,78:31:150:0.520:2	0/1:85,75:31:160:0.469:2	./.	0/1:0,98:31:98:1.00:2	./.
chr19	6665020	rs344560	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,92:33:92:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,73:33:73:1.00:2	0/1:0,55:33:55:1.00:2	0/1:0,33:29:33:1.00:2
chr19	6669934	rs2291668	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:27:11:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	6677989	rs17030	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,39:33:105:0.371:2	0/1:27,24:32:51:0.471:2	0/1:10,10:32:20:0.500:2	0/1:84,69:32:153:0.451:2	0/1:3,187:32:190:0.984:2	0/1:114,78:32:193:0.406:2	./.	0/1:108,87:32:195:0.446:2	0/1:83,79:33:162:0.488:2	./.	./.
chr19	6678474	rs11569565	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,40:32:92:0.435:2	./.	./.	./.	./.	./.	./.	0/1:0,90:32:90:1.00:2
chr19	6679511	rs2277984	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,28:32:53:0.528:2	0/1:12,12:32:24:0.500:2	./.	0/1:44,36:31:80:0.450:2	0/1:0,54:31:54:1.00:2	0/1:33,33:31:66:0.500:2	./.	0/1:33,21:32:54:0.389:2	0/1:31,49:33:80:0.613:2	./.	./.
chr19	6686911	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,6:31:112:0.054:2	./.	./.	./.
chr19	6696597	rs2287845	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,38:30:65:0.585:2	0/1:22,20:30:42:0.476:2	0/1:0,13:31:13:1.00:2	0/1:41,45:31:86:0.523:2	0/1:40,71:30:111:0.640:2	0/1:1,87:30:88:0.989:2	0/1:43,57:31:100:0.570:2	0/1:33,52:31:85:0.612:2	0/1:1,97:32:98:0.990:2	0/1:0,89:31:89:1.00:2	0/1:39,44:31:83:0.530:2
chr19	6697406	rs423490	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,51:28:95:0.537:2	0/1:37,25:27:62:0.403:2	0/1:0,15:29:15:1.00:2	0/1:68,45:28:113:0.398:2	0/1:113,81:28:194:0.418:2	0/1:1,133:28:134:0.993:2	0/1:122,74:29:196:0.378:2	0/1:95,96:28:191:0.503:2	0/1:0,125:30:125:1.00:2	0/1:0,85:28:85:1.00:2	0/1:62,54:28:116:0.466:2
chr19	6697523	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:32:150:0.027:2
chr19	6702157	rs428453	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,18:34:28:0.643:2	0/1:4,10:32:14:0.714:2	0/1:0,6:33:6:1.00:2	0/1:18,17:33:35:0.486:2	0/1:11,19:33:30:0.633:2	0/1:0,48:32:48:1.00:2	0/1:20,23:33:43:0.535:2	0/1:38,12:31:50:0.240:2	0/1:0,34:34:34:1.00:2	0/1:0,31:33:31:1.00:2	0/1:27,23:31:50:0.460:2
chr19	6709704	rs2230205	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:49,34:31:83:0.410:2	0/1:26,14:29:40:0.350:2	0/1:8,12:31:20:0.600:2	./.	0/1:108,64:31:172:0.372:2	./.	./.	./.	./.	./.	./.
chr19	6709740	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:31:150:0.027:2	./.	./.	./.	./.	./.
chr19	6709848	rs2230204	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,24:28:45:0.533:2
chr19	6710782	rs2230203	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,53:30:102:0.520:2	./.	./.	0/1:52,57:31:109:0.523:2	0/1:57,72:31:129:0.558:2	0/1:4,88:31:92:0.957:2	0/1:1,90:31:91:0.989:2	./.
chr19	6713262	rs1047286	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,41:31:73:0.569:2	./.	./.	0/1:36,52:32:88:0.591:2	0/1:38,26:31:64:0.406:2	0/1:2,82:33:84:0.976:2	0/1:0,52:31:52:1.00:2	./.
chr19	6713291	rs2230201	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:18,16:31:34:0.471:2	0/1:19,11:32:30:0.367:2	0/1:0,3:32:3:1.00:2	./.	0/1:24,27:29:51:0.529:2	0/1:31,38:30:69:0.551:2	./.	./.	./.	./.	./.
chr19	6714374	rs150007726	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,37:32:92:0.402:2	./.	./.	./.
chr19	6718387	rs2230199	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,179:32:185:0.968:2	./.	./.	0/1:118,77:31:196:0.395:2	0/1:114,81:32:195:0.415:2	0/1:4,171:33:176:0.977:2	0/1:3,178:32:181:0.983:2	./.
chr19	6731057	rs2279624	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,37:32:86:0.430:2	0/1:29,22:32:51:0.431:2	0/1:7,11:31:18:0.611:2	0/1:3,115:32:118:0.975:2	0/1:1,159:32:160:0.994:2	0/1:1,123:32:124:0.992:2	0/1:0,182:32:182:1.00:2	0/1:0,169:32:169:1.00:2	0/1:0,174:33:174:1.00:2	0/1:0,112:31:112:1.00:2	0/1:55,39:32:94:0.415:2
chr19	6737481	rs340138	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,6:29:6:1.00:2	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.
chr19	6737509	rs339401	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	0/1:0,5:30:5:1.00:2	./.	./.	0/1:0,2:33:2:1.00:2	0/1:0,3:31:3:1.00:2	./.	./.
chr19	6739814	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,4:33:85:0.047:2	./.	./.	./.	./.	./.	./.
chr19	6751279	rs1049229	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,18:31:62:0.290:2	./.	./.	0/1:40,17:30:57:0.298:2	./.	./.	./.	./.
chr19	6751281	rs1049230	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,16:27:61:0.267:2	./.	./.	0/1:43,16:24:61:0.271:2	./.	./.	./.	./.
chr19	6751293	rs1049232	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,22:31:74:0.297:2	./.	./.	0/1:58,22:31:80:0.275:2	./.	./.	./.	./.
chr19	6754870	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:31:74:0.054:2	./.
chr19	6755007	rs2305806	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:10,6:26:16:0.375:2	./.	./.	0/1:11,9:29:20:0.450:2	./.	./.	0/1:3,4:29:7:0.571:2	./.	./.	./.	0/1:7,6:32:13:0.462:2
chr19	6755155	rs12608960	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,26:30:43:0.605:2	0/1:14,10:31:24:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,24:31:56:0.429:2
chr19	6759631	rs62125124	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,22:32:47:0.468:2	0/1:12,15:32:27:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,34:32:82:0.420:2
chr19	6760974	rs7258236	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,35:32:35:1.00:2	0/1:0,22:32:22:1.00:2	./.	./.	./.	./.	./.	0/1:24,6:32:30:0.200:2	./.	./.	0/1:22,20:32:42:0.476:2
chr19	6763718	rs2305805	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,11:33:11:1.00:2	0/1:0,13:31:13:1.00:2	./.	./.	./.	./.	./.	0/1:42,18:32:60:0.300:2	./.	./.	0/1:19,16:32:35:0.457:2
chr19	6772872	rs45448796	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:40,34:30:74:0.459:2	0/1:20,16:30:36:0.444:2	./.	./.	./.	./.	./.	0/1:69,50:32:120:0.420:2	./.	./.	./.
chr19	6821625	rs28617395	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,31:32:67:0.470:2	./.	./.	./.	./.	0/1:37,25:33:62:0.403:2	0/1:22,17:32:39:0.436:2	./.
chr19	6833210	rs117509372	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:31:10:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	6833777	rs186295	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:30:58:1.00:2	0/1:0,32:30:32:1.00:2	0/1:2,3:31:5:0.600:2	0/1:0,70:30:70:1.00:2	0/1:29,21:28:50:0.420:2	0/1:0,62:30:62:1.00:2	0/1:36,43:29:79:0.544:2	0/1:54,39:30:93:0.419:2	./.	0/1:1,71:30:72:0.986:2	0/1:0,101:30:101:1.00:2
chr19	6833989	rs308199	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:32:30:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,41:31:41:1.00:2	0/1:16,10:31:26:0.385:2	0/1:2,39:31:41:0.951:2	0/1:23,12:32:35:0.343:2	0/1:29,12:31:41:0.293:2	0/1:0,49:31:49:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,51:31:51:1.00:2
chr19	6848054	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:33:53:0.075:2	./.	./.	./.	./.
chr19	6850767	rs36097961	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,14:32:32:0.438:2	0/1:13,9:31:22:0.409:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	6854050	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:29:93:0.043:2	./.	./.	./.	./.
chr19	6896483	rs330877	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,9:31:17:0.529:2	./.	./.	./.	0/1:89,96:32:185:0.519:2	./.	./.	0/1:82,74:31:156:0.474:2	0/1:93,77:31:172:0.453:2
chr19	6897464	rs330880	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:78,75:32:153:0.490:2	0/1:38,43:31:81:0.531:2	./.	./.	./.	./.	0/1:98,87:32:185:0.470:2	./.	./.	0/1:72,61:32:133:0.459:2	./.
chr19	6897525	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:33:186:0.022:2
chr19	6901891	rs897738	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,30:31:74:0.405:2	./.	./.	0/1:24,37:32:61:0.607:2	./.
chr19	6903920	rs443658	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,34:33:65:0.523:2	./.	./.	0/1:31,18:33:49:0.367:2	./.
chr19	6904137	rs370094	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,37:30:64:0.578:2	./.	./.	0/1:19,23:31:42:0.548:2	./.
chr19	6906469	rs78491083	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,9:31:19:0.474:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	6913707	rs466876	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,19:32:62:0.306:2	./.	./.	0/1:0,56:32:56:1.00:2	./.	./.	0/1:23,28:31:51:0.549:2	./.
chr19	6913811	rs457857	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,24:32:63:0.381:2	0/1:20,10:31:30:0.333:2	0/1:0,11:33:11:1.00:2	0/1:40,31:31:71:0.437:2	0/1:32,20:31:52:0.385:2	./.	0/1:0,63:33:63:1.00:2	./.	0/1:4,66:33:70:0.943:2	0/1:0,55:32:55:1.00:2	0/1:0,65:32:65:1.00:2
chr19	6919624	rs373533	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:33:70:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,10:33:10:1.00:2	0/1:55,30:33:85:0.353:2	0/1:21,25:33:48:0.543:2	0/1:34,41:32:75:0.547:2	0/1:0,57:33:57:1.00:2	./.	0/1:52,45:34:97:0.464:2	0/1:0,42:33:42:1.00:2	0/1:1,104:33:105:0.990:2
chr19	6919753	rs461645	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:30:44:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,7:29:7:1.00:2	0/1:35,21:31:56:0.375:2	0/1:27,23:28:50:0.460:2	0/1:30,40:30:70:0.571:2	0/1:0,30:30:30:1.00:2	./.	0/1:39,21:31:60:0.350:2	0/1:0,42:30:42:1.00:2	0/1:0,58:29:59:1.00:2
chr19	6921868	rs7256147	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,42:31:104:0.404:2	0/1:83,49:32:132:0.371:2	0/1:72,41:31:113:0.363:2	./.	0/1:0,124:32:124:1.00:2	0/1:64,42:33:106:0.396:2	./.	./.
chr19	6921879	rs148040255	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,39:32:86:0.453:2	./.
chr19	6926378	rs2228539	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,6:31:15:0.400:2	0/1:75,50:31:125:0.400:2	./.	0/1:54,31:30:85:0.365:2	0/1:1,119:31:120:0.992:2	./.	./.	0/1:37,47:31:84:0.560:2	./.
chr19	7032338	rs201549106	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,6:29:42:0.143:2	./.	./.	./.	./.	./.
chr19	7032367	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:92,9:31:101:0.089:2	./.	./.	./.	./.	./.	./.
chr19	7032648	.	G	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:22,5:32:27:0.185:2	0/1:21,4:32:25:0.160:2	./.	0/1:3,23:32:26:0.885:2	./.	0/1:27,13:32:40:0.325:2	0/1:2,31:32:33:0.939:2	0/1:3,47:32:50:0.940:2	0/1:24,7:33:31:0.226:2	0/1:41,12:33:53:0.226:2	0/1:6,14:32:20:0.700:2
chr19	7032660	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,3:29:23:0.130:2	./.	./.	./.	./.	./.
chr19	7032902	rs78637972	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	0/1:0,19:29:19:1.00:2	0/1:0,2:28:2:1.00:2	./.	0/1:0,19:30:19:1.00:2	./.	./.
chr19	7051095	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:185,9:32:194:0.046:2	./.	./.	./.	./.	./.	./.
chr19	7051376	rs200081225	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,11:33:59:0.186:2	0/1:41,14:32:55:0.255:2	0/1:7,10:33:17:0.588:2	0/1:6,108:32:114:0.947:2	./.	0/1:58,91:32:149:0.611:2	0/1:0,155:32:155:1.00:2	0/1:2,153:33:155:0.987:2	0/1:93,27:33:120:0.225:2	0/1:85,75:32:160:0.469:2	0/1:2,66:32:68:0.971:2
chr19	7051388	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,9:30:143:0.063:2	./.	./.	0/1:107,13:33:120:0.108:2	./.	./.
chr19	7051431	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,10:29:54:0.185:2	./.	./.	./.	./.	./.	./.
chr19	7051588	rs76206324	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:41,14:32:55:0.255:2	0/1:28,10:33:38:0.263:2	./.	./.	0/1:131,33:30:164:0.201:2	./.	./.	./.	./.	0/1:66,70:32:136:0.515:2	./.
chr19	7083170	rs199689984	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,29:31:67:0.433:2	./.	./.	./.	./.	./.
chr19	7083629	rs966591	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,59:28:59:1.00:2	./.	0/1:25,21:29:46:0.457:2	0/1:0,28:27:29:1.00:2	0/1:0,42:28:42:1.00:2	./.	0/1:17,22:28:39:0.564:2	0/1:50,28:29:78:0.359:2
chr19	7125297	rs1799817	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,12:33:21:0.571:2	./.	./.	0/1:17,13:33:30:0.433:2	0/1:26,13:31:39:0.333:2	./.	./.	./.	./.	0/1:14,9:33:23:0.391:2	./.
chr19	7125519	rs1799815	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:33:10:0.600:2	./.	0/1:28,30:30:58:0.517:2	./.	./.	./.	./.	./.	./.
chr19	7141775	rs2229431	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,81:31:181:0.448:2	0/1:6,189:31:195:0.969:2	./.	./.	./.	./.
chr19	7163065	rs2962	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,50:31:118:0.424:2	./.	./.	./.	./.	./.	./.
chr19	7163112	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:34:156:0.026:2	./.	./.
chr19	7163140	rs2245655	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,22:30:80:0.275:2	./.	./.	./.	./.
chr19	7163154	rs2963	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,15:31:75:0.200:2	./.	./.	./.	./.
chr19	7166376	rs2059806	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:20,33:32:53:0.623:2	0/1:10,10:32:20:0.500:2	./.	0/1:0,58:32:58:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr19	7166388	rs2229429	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,31:31:57:0.544:2	0/1:27,21:30:48:0.438:2	0/1:1,70:31:71:0.986:2	./.	./.	./.	0/1:18,20:32:38:0.526:2
chr19	7168032	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:29:113:0.035:2	./.	./.	./.
chr19	7184518	rs891087	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,72:31:132:0.545:2	./.	./.	./.	./.
chr19	7504982	rs10422503	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,12:29:20:0.600:2	0/1:1,8:30:9:0.889:2	./.	0/1:8,20:28:28:0.714:2	0/1:6,9:26:15:0.600:2	./.	0/1:0,9:28:9:1.00:2	0/1:1,14:27:15:0.933:2	0/1:3,14:28:17:0.824:2	./.	0/1:5,6:27:11:0.545:2
chr19	7506808	rs6603073	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	7524846	rs2287914	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,26:30:45:0.578:2	0/1:18,13:32:31:0.419:2	./.	./.	./.	0/1:48,49:30:97:0.505:2	./.	./.	./.	0/1:31,23:30:54:0.426:2	./.
chr19	7524855	rs2287915	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,27:30:47:0.574:2	0/1:21,13:32:34:0.382:2	./.	./.	./.	0/1:44,48:31:93:0.522:2	./.	./.	./.	0/1:29,23:30:52:0.442:2	./.
chr19	7528734	rs2287918	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:31:81:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,24:31:24:1.00:2	0/1:62,31:30:95:0.333:2	0/1:78,26:29:104:0.250:2	0/1:103,41:30:144:0.285:2	0/1:1,65:30:66:0.985:2	0/1:0,104:29:104:1.00:2	0/1:66,48:30:114:0.421:2	0/1:0,46:30:46:1.00:2	0/1:2,41:31:43:0.953:2
chr19	7532252	rs2303142	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	7533767	rs10405143	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:31:39:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,6:33:6:1.00:2	0/1:9,26:31:35:0.743:2	0/1:25,17:30:42:0.405:2	0/1:53,31:31:84:0.369:2	0/1:0,27:32:27:1.00:2	0/1:0,54:31:54:1.00:2	0/1:25,27:33:52:0.519:2	0/1:0,45:32:45:1.00:2	0/1:0,38:31:38:1.00:2
chr19	7533850	rs9329368	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,9:32:9:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,2:32:2:1.00:2	./.	0/1:13,8:29:21:0.381:2	0/1:17,7:27:24:0.292:2	0/1:0,3:35:3:1.00:2	0/1:0,3:25:3:1.00:2	0/1:9,6:32:15:0.400:2	0/1:0,3:32:3:1.00:2	./.
chr19	7542118	rs7256275	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,17:30:21:0.810:2	./.	./.	./.	./.	./.
chr19	7547074	rs2303146	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,19:30:44:0.432:2	./.	./.	./.	./.	0/1:28,9:27:37:0.243:2
chr19	7550844	rs34970001	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:33:4:0.750:2	./.	./.	0/1:32,39:30:71:0.549:2	./.	./.	./.	./.	0/1:34,26:33:60:0.433:2
chr19	7569282	rs484870	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,16:33:42:0.381:2	0/1:8,16:32:24:0.667:2	0/1:0,2:32:2:1.00:2	0/1:18,30:33:48:0.625:2	0/1:20,26:32:46:0.565:2	0/1:33,36:32:69:0.522:2	./.	0/1:2,65:32:67:0.970:2	0/1:43,30:33:73:0.411:2	0/1:28,13:32:41:0.317:2	0/1:36,21:31:57:0.368:2
chr19	7570978	rs685034	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:32:56:1.00:2	0/1:0,34:32:34:1.00:2	0/1:2,3:35:5:0.600:2	0/1:38,30:32:68:0.441:2	0/1:0,86:32:86:1.00:2	0/1:0,87:32:87:1.00:2	0/1:64,43:32:107:0.402:2	0/1:0,87:32:87:1.00:2	0/1:61,36:34:97:0.371:2	0/1:0,54:32:54:1.00:2	0/1:0,64:33:64:1.00:2
chr19	7570990	rs685048	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,27:32:48:0.563:2	0/1:15,13:32:28:0.464:2	0/1:2,3:34:5:0.600:2	0/1:33,25:32:58:0.431:2	0/1:35,41:33:76:0.539:2	0/1:36,37:32:73:0.507:2	./.	0/1:0,70:32:70:1.00:2	0/1:47,21:34:68:0.309:2	0/1:26,23:32:49:0.469:2	0/1:30,26:32:56:0.464:2
chr19	7571030	rs3826736	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,13:29:24:0.542:2	0/1:8,8:30:16:0.500:2	0/1:0,2:30:2:1.00:2	0/1:15,8:27:23:0.348:2	0/1:21,13:27:34:0.382:2	0/1:18,13:28:31:0.419:2	./.	0/1:0,19:27:19:1.00:2	0/1:26,4:28:30:0.133:2	0/1:11,7:29:18:0.389:2	0/1:14,11:28:25:0.440:2
chr19	7573098	rs475923	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,31:32:73:0.425:2	0/1:26,15:31:41:0.366:2	./.	0/1:47,48:30:95:0.505:2	0/1:38,39:31:77:0.506:2	0/1:40,40:31:80:0.500:2	./.	0/1:3,75:30:79:0.962:2	0/1:51,39:33:91:0.433:2	0/1:34,32:31:66:0.485:2	0/1:51,51:31:102:0.500:2
chr19	7573287	rs1133378	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:25,23:31:48:0.479:2	0/1:19,18:32:37:0.486:2	./.	./.	0/1:34,15:30:49:0.306:2	0/1:39,15:30:54:0.278:2	./.	0/1:0,46:31:46:1.00:2	0/1:25,38:33:63:0.603:2	0/1:29,11:32:40:0.275:2	0/1:51,27:32:78:0.346:2
chr19	7573297	rs608144	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,24:28:50:0.480:2	0/1:19,18:29:37:0.486:2	./.	0/1:46,39:30:85:0.459:2	0/1:39,16:29:55:0.291:2	0/1:43,16:28:59:0.271:2	./.	0/1:0,43:29:43:1.00:2	0/1:26,32:30:58:0.552:2	0/1:32,15:30:47:0.319:2	0/1:47,26:29:73:0.356:2
chr19	7573301	rs1133380	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:29,24:30:53:0.453:2	0/1:18,18:31:36:0.500:2	./.	./.	0/1:41,17:30:58:0.293:2	0/1:45,19:30:65:0.297:2	./.	0/1:0,47:29:47:1.00:2	0/1:26,32:31:58:0.552:2	0/1:33,17:31:50:0.340:2	0/1:44,26:31:70:0.371:2
chr19	7584223	rs11555037	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,24:33:32:0.750:2	0/1:6,5:33:11:0.455:2	./.	./.	0/1:13,12:33:25:0.480:2	0/1:17,34:32:51:0.667:2	0/1:14,10:32:24:0.417:2	./.	./.	0/1:14,14:32:28:0.500:2	0/1:23,23:33:47:0.500:2
chr19	7584483	rs78214445	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.	./.	./.
chr19	7585762	rs116797831	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,30:32:65:0.462:2	./.
chr19	7591416	rs139939038	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,69:31:159:0.434:2	./.	./.	./.
chr19	7593048	rs73003348	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,35:31:73:0.479:2	./.	./.
chr19	7593565	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:32:186:0.022:2	./.	./.	./.	./.	./.
chr19	7593571	rs61736600	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,65:29:164:0.396:2	./.	0/1:69,56:29:125:0.448:2
chr19	7593589	rs612862	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,57:31:129:0.442:2	0/1:40,43:32:83:0.518:2	0/1:9,6:32:15:0.400:2	0/1:84,74:31:158:0.468:2	0/1:103,75:31:178:0.421:2	0/1:74,83:31:157:0.529:2	0/1:82,71:31:153:0.464:2	./.	./.	0/1:84,70:31:154:0.455:2	0/1:62,60:31:122:0.492:2
chr19	7595231	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:30:106:0.038:2	./.	./.	./.	./.	./.
chr19	7605566	rs591040	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,66:30:161:0.410:2	./.	./.	./.	./.	./.	./.
chr19	7606908	rs17854645	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:7,5:29:12:0.417:2	0/1:1,7:33:8:0.875:2	./.	0/1:5,5:34:10:0.500:2	./.	./.	0/1:11,5:34:16:0.313:2	./.	./.	./.	./.
chr19	7614888	rs62111288	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,43:28:79:0.544:2	0/1:16,26:29:42:0.619:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	7615903	rs8107538	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:29:3:1.00:2	0/1:0,3:30:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	7619522	rs522776	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,4:30:12:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	7623941	rs112133109	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,37:31:93:0.398:2	./.	./.	./.	./.	./.	./.	./.
chr19	7675369	rs62113420	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,38:31:81:0.469:2	./.	0/1:30,26:29:56:0.464:2	./.	./.	0/1:41,16:31:57:0.281:2	./.	./.
chr19	7685843	rs794078	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:30:10:0.400:2	./.	0/1:26,22:31:48:0.458:2	0/1:20,32:31:52:0.615:2	./.	./.	./.	./.	./.
chr19	7687428	rs4134853	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,12:30:20:0.600:2	./.
chr19	7688090	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:33:63:0.063:2	./.	./.
chr19	7692672	rs200149051	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,8:23:71:0.114:2	./.	0/1:11,5:21:16:0.313:2	0/1:102,18:19:120:0.150:2	0/1:117,11:15:128:0.086:2	0/1:93,15:18:108:0.139:2	./.	0/1:107,11:16:118:0.093:2	0/1:95,14:18:109:0.128:2	0/1:81,15:16:96:0.156:2	0/1:75,7:24:82:0.085:2
chr19	7694393	rs4134809	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,31:29:50:0.620:2	0/1:9,20:31:29:0.690:2	./.	0/1:33,28:30:61:0.459:2	0/1:29,43:29:72:0.597:2	0/1:44,22:30:66:0.333:2	./.	0/1:34,29:29:63:0.460:2	0/1:1,48:30:49:0.980:2	./.	./.
chr19	7698320	rs1862514	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:57,26:32:83:0.313:2	0/1:18,24:32:42:0.571:2	./.	0/1:89,77:32:166:0.464:2	0/1:103,47:31:150:0.313:2	0/1:93,67:32:160:0.419:2	./.	0/1:84,75:32:159:0.472:2	0/1:2,132:33:134:0.985:2	./.	0/1:67,56:32:123:0.455:2
chr19	7703605	rs8104339	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:37,20:33:57:0.351:2	0/1:6,8:31:14:0.571:2	./.	0/1:28,28:32:56:0.500:2	0/1:30,27:32:57:0.474:2	0/1:27,23:31:50:0.460:2	./.	0/1:43,37:31:80:0.463:2	0/1:0,56:34:56:1.00:2	./.	0/1:28,17:32:45:0.378:2
chr19	7711221	rs10001	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:54,52:29:106:0.491:2	0/1:25,31:29:57:0.554:2	./.	0/1:60,60:29:120:0.500:2	0/1:58,44:29:102:0.431:2	0/1:59,39:29:99:0.398:2	./.	0/1:82,68:28:150:0.453:2	0/1:0,83:30:83:1.00:2	0/1:37,32:28:69:0.464:2	0/1:37,43:28:80:0.538:2
chr19	7712277	rs6791	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,9:28:14:0.643:2	0/1:6,3:29:9:0.333:2	./.	0/1:13,12:30:25:0.480:2	0/1:5,28:27:33:0.848:2	0/1:0,22:29:22:1.00:2	./.	0/1:18,11:27:29:0.379:2	0/1:0,13:28:13:1.00:2	0/1:10,5:27:15:0.333:2	0/1:0,15:27:15:1.00:2
chr19	7743282	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:32:152:0.027:2	./.
chr19	7743821	rs72996468	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,23:27:38:0.605:2	0/1:22,32:27:54:0.593:2	0/1:17,27:27:44:0.614:2	./.	./.	./.	./.
chr19	7743879	rs4804766	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:32:7:0.857:2	./.	0/1:39,27:30:66:0.409:2	0/1:30,42:31:72:0.583:2	0/1:0,44:30:44:1.00:2	0/1:38,30:31:68:0.441:2	0/1:26,40:32:66:0.606:2	0/1:28,33:30:61:0.541:2	./.
chr19	7743975	rs11882592	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,34:32:35:0.971:2	0/1:0,31:32:31:1.00:2	./.	0/1:26,35:31:61:0.574:2	./.	./.	./.	./.	./.	./.	./.
chr19	7747293	rs6952	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,6:33:17:0.353:2	0/1:4,4:35:8:0.500:2	./.	./.	./.	0/1:0,2:36:2:1.00:2	./.	./.
chr19	7747445	rs1053363	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,19:32:24:0.792:2	./.	0/1:27,33:32:60:0.550:2	./.	./.
chr19	7754294	rs200736793	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:29:10:0.300:2	0/1:7,6:16:13:0.462:2	./.	./.	./.	./.
chr19	7755056	rs2228138	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,7:32:17:0.412:2	0/1:18,9:31:27:0.333:2	0/1:8,9:30:17:0.529:2	0/1:0,23:31:23:1.00:2	./.	0/1:12,10:32:22:0.455:2	0/1:11,10:33:21:0.476:2	./.
chr19	7755083	rs1042429	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,10:30:30:0.333:2	./.	./.	./.	./.	./.	./.
chr19	7763248	rs2228137	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,42:32:86:0.488:2	./.	./.	0/1:30,35:30:65:0.538:2	./.	0/1:50,47:33:97:0.485:2	0/1:28,39:32:67:0.582:2	./.
chr19	7763703	rs2287866	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,43:31:96:0.448:2	./.	./.	./.	./.	./.
chr19	7764609	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,6:33:141:0.043:2	./.	./.	./.	./.	./.
chr19	7796587	rs117034642	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,4:29:21:0.190:2	./.	0/1:88,105:30:193:0.544:2	./.	./.	0/1:91,100:29:191:0.524:2	./.	0/1:66,89:30:155:0.574:2	./.
chr19	7796608	rs78770256	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,66:32:167:0.395:2	./.
chr19	7810725	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:30:7:0.429:2	./.	./.	./.	./.	./.
chr19	7810767	rs146082308	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,3:30:11:0.273:2	./.	./.	./.	./.	./.
chr19	7812181	rs7252229	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:57,50:31:107:0.467:2	0/1:38,34:32:72:0.472:2	0/1:9,6:32:15:0.400:2	./.	0/1:2,90:31:92:0.978:2	./.	./.	0/1:8,171:32:179:0.955:2	./.	0/1:53,41:31:94:0.436:2	./.
chr19	7812379	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:27:61:0.067:2	./.	./.	./.	./.	./.
chr19	7830662	rs113080783	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,15:31:32:0.469:2	./.	./.	./.	./.	./.	./.	./.
chr19	7830936	rs59003279	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,3:33:3:1.00:2	./.	./.	0/1:1,3:32:4:0.750:2	0/1:1,2:32:3:0.667:2	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.	./.
chr19	7830937	rs59002457	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,3:34:3:1.00:2	./.	./.	0/1:1,3:32:4:0.750:2	0/1:1,2:32:3:0.667:2	./.	./.	./.	0/1:0,5:33:5:1.00:2	./.	./.
chr19	7830938	rs145645281	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:26:4:0.750:2	./.	./.	./.	./.	0/1:1,4:26:5:0.800:2	./.	./.
chr19	7831047	rs868878	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,26:31:48:0.542:2	./.	./.	./.
chr19	7831628	rs2277998	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,89:31:89:1.00:2	0/1:2,61:31:63:0.968:2	0/1:0,17:30:17:1.00:2	0/1:57,54:31:111:0.486:2	0/1:77,53:30:130:0.408:2	0/1:76,41:30:117:0.350:2	0/1:65,47:30:112:0.420:2	0/1:81,71:30:152:0.467:2	0/1:1,119:30:120:0.992:2	./.	./.
chr19	7832509	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,5:24:56:0.089:2	./.	./.	./.	./.	./.
chr19	7913974	rs555609	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:29:68:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,5:30:5:1.00:2	0/1:35,24:28:59:0.407:2	0/1:58,55:28:113:0.487:2	0/1:2,87:29:89:0.978:2	0/1:2,97:29:99:0.980:2	0/1:50,52:29:102:0.510:2	0/1:0,64:29:64:1.00:2	0/1:32,21:29:53:0.396:2	0/1:0,60:29:60:1.00:2
chr19	7916620	rs580790	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:30:46:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,7:29:7:1.00:2	0/1:2,76:30:78:0.974:2	0/1:0,84:30:84:1.00:2	0/1:0,69:29:69:1.00:2	0/1:0,50:31:50:1.00:2	0/1:44,33:30:77:0.429:2	0/1:0,69:31:69:1.00:2	0/1:24,30:30:54:0.556:2	0/1:0,43:30:43:1.00:2
chr19	7926874	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,4:32:37:0.108:2	./.	./.	./.	./.	./.	./.	./.
chr19	7928462	rs10410459	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:30:32:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,42:30:42:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,27:30:27:1.00:2
chr19	7963914	rs524029	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:32:44:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,50:32:50:1.00:2	0/1:1,43:32:44:0.977:2	0/1:0,48:32:48:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,36:31:36:1.00:2
chr19	7963949	rs2042919	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:17,17:31:34:0.500:2	0/1:10,12:31:22:0.545:2	./.	0/1:19,10:32:29:0.345:2	./.	./.	./.	0/1:12,8:31:20:0.400:2	0/1:21,15:33:36:0.417:2	./.	0/1:15,7:33:23:0.318:2
chr19	7963976	rs2115108	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:18,16:27:34:0.471:2	0/1:10,10:27:20:0.500:2	./.	0/1:20,21:28:41:0.512:2	./.	./.	0/1:14,7:29:21:0.333:2	0/1:9,16:27:25:0.640:2	0/1:20,13:27:33:0.394:2	./.	0/1:15,7:28:22:0.318:2
chr19	7964132	rs146121701	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,90:31:172:0.523:2	./.	./.	./.	./.
chr19	7964184	rs149579283	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,22:32:57:0.386:2	0/1:14,10:33:24:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	7964616	rs45603833	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,32:31:46:0.696:2	0/1:16,17:33:33:0.515:2	./.	0/1:17,18:32:35:0.514:2	0/1:26,16:33:42:0.381:2	./.	0/1:20,15:30:35:0.429:2
chr19	7964727	rs3745382	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,14:31:32:0.438:2	0/1:10,4:32:14:0.286:2	0/1:1,2:31:3:0.667:2	0/1:9,11:30:20:0.550:2	./.	./.	./.	0/1:13,8:31:21:0.381:2	0/1:7,13:33:20:0.650:2	./.	0/1:22,18:29:40:0.450:2
chr19	7965339	rs3745383	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,55:31:108:0.509:2	./.	./.	./.	0/1:81,45:32:126:0.357:2	./.	./.	./.
chr19	7975204	rs28395773	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,20:32:45:0.444:2	./.
chr19	7975247	rs200200323	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,9:29:19:0.474:2	0/1:16,7:30:23:0.304:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	7976127	rs56358830	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,10:24:19:0.526:2	0/1:4,3:26:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	7986638	rs475002	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,17:29:33:0.515:2	0/1:13,16:29:29:0.552:2	0/1:0,6:31:6:1.00:2	0/1:33,20:30:53:0.377:2	0/1:38,33:30:71:0.465:2	./.	0/1:38,32:30:70:0.457:2	./.	0/1:26,39:31:65:0.600:2	./.	0/1:37,22:30:61:0.373:2
chr19	7992126	rs11542188	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,51:31:99:0.515:2	./.	./.	./.	./.	./.
chr19	7992583	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:31:130:0.031:2	./.	./.	./.	./.
chr19	7992959	rs34425383	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,52:32:115:0.452:2	./.	./.	./.	./.	./.
chr19	7992976	rs11542187	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,79:30:149:0.530:2	./.	./.	./.	./.	./.
chr19	7998386	rs118048213	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,66:33:167:0.398:2	0/1:97,74:34:171:0.433:2	./.	./.
chr19	8000001	rs11542189	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,56:31:127:0.441:2	./.	./.	./.	0/1:52,31:31:83:0.373:2	./.
chr19	8003021	rs117812409	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,23:33:43:0.535:2	./.	./.	./.
chr19	8028442	rs117307819	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,71:32:147:0.483:2	./.	./.	./.
chr19	8028544	rs14394	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,8:31:22:0.364:2	0/1:87,78:29:165:0.473:2	0/1:1,157:29:158:0.994:2	0/1:78,72:29:150:0.480:2	./.	0/1:88,84:29:172:0.488:2	0/1:65,63:30:129:0.492:2	./.	./.
chr19	8118000	rs960173	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,7:30:25:0.280:2	./.	./.	./.
chr19	8121096	rs74959615	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:42,42:31:84:0.500:2	0/1:31,33:30:64:0.516:2	0/1:3,9:30:12:0.750:2	./.	0/1:44,39:29:83:0.470:2	./.	./.	./.	./.	0/1:46,47:31:93:0.505:2	./.
chr19	8121360	rs2032887	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,16:29:37:0.432:2	0/1:11,12:30:23:0.522:2	./.	./.	0/1:31,25:28:56:0.446:2	0/1:1,60:30:61:0.984:2	0/1:42,21:30:63:0.333:2	./.	./.	0/1:23,17:30:40:0.425:2	./.
chr19	8121369	rs1129763	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,32:31:58:0.552:2	./.	./.	0/1:62,30:32:92:0.326:2	./.	./.	./.
chr19	8122737	rs2303164	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,36:33:85:0.424:2	0/1:31,30:31:61:0.492:2	0/1:8,6:31:14:0.429:2	0/1:59,59:32:118:0.500:2	0/1:49,48:32:97:0.495:2	0/1:68,61:31:129:0.473:2	0/1:46,56:31:102:0.549:2	0/1:1,102:32:103:0.990:2	0/1:0,113:33:113:1.00:2	0/1:49,50:31:99:0.505:2	0/1:0,128:32:128:1.00:2
chr19	8122767	rs2303165	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,98:33:98:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,121:33:121:1.00:2	0/1:0,134:32:134:1.00:2	0/1:0,152:33:152:1.00:2	0/1:2,126:33:128:0.984:2	0/1:1,152:32:153:0.993:2	0/1:0,116:33:116:1.00:2	0/1:1,118:33:119:0.992:2	0/1:1,151:32:153:0.993:2
chr19	8127075	rs34145389	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:22,25:33:47:0.532:2	0/1:10,12:32:23:0.545:2	./.	0/1:29,26:32:55:0.473:2	./.	0/1:30,34:31:64:0.531:2	0/1:34,29:33:63:0.460:2	0/1:44,19:33:63:0.302:2	0/1:32,30:31:62:0.484:2	./.	0/1:0,55:32:55:1.00:2
chr19	8138054	rs7257948	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,41:31:82:0.500:2	0/1:19,28:31:47:0.596:2	0/1:1,14:30:15:0.933:2	0/1:60,51:29:111:0.459:2	0/1:1,109:30:110:0.991:2	0/1:53,57:30:110:0.518:2	0/1:36,46:30:82:0.561:2	0/1:58,64:31:122:0.525:2	./.	0/1:26,38:31:64:0.594:2	./.
chr19	8138139	rs73923958	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,57:30:106:0.538:2	./.
chr19	8139977	rs61729621	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,15:32:42:0.357:2	0/1:8,8:31:16:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	8145921	rs2303168	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,12:28:26:0.462:2	0/1:2,6:31:8:0.750:2	0/1:0,10:29:10:1.00:2	0/1:15,8:29:23:0.348:2	0/1:1,44:28:45:0.978:2	0/1:18,26:29:44:0.591:2	0/1:12,7:30:19:0.368:2	0/1:12,15:31:27:0.556:2	./.	0/1:10,11:28:22:0.524:2	./.
chr19	8145928	rs3848570	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,12:32:26:0.462:2	0/1:2,6:30:8:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	8152017	rs144400071	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,34:31:64:0.531:2	./.	./.	./.	./.	./.
chr19	8152725	rs12460643	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:28:74:1.00:2	0/1:0,51:27:51:1.00:2	0/1:0,9:25:9:1.00:2	0/1:58,54:28:112:0.482:2	./.	0/1:1,88:27:90:0.989:2	0/1:2,128:28:130:0.985:2	0/1:0,159:27:159:1.00:2	./.	0/1:37,35:28:72:0.486:2	0/1:1,89:27:90:0.989:2
chr19	8154760	rs35033566	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,38:28:38:1.00:2	0/1:2,27:28:29:0.931:2	./.	0/1:32,32:30:64:0.500:2	./.	0/1:2,65:30:67:0.970:2	0/1:43,20:29:63:0.317:2	0/1:2,56:29:58:0.966:2	./.	0/1:25,20:29:45:0.444:2	0/1:0,54:28:54:1.00:2
chr19	8154984	rs56194853	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,10:32:29:0.345:2	./.
chr19	8154990	rs35002391	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:18,20:32:38:0.526:2	0/1:11,12:32:23:0.522:2	./.	0/1:30,23:31:53:0.434:2	./.	0/1:0,43:31:43:1.00:2	0/1:33,18:32:51:0.353:2	0/1:1,51:32:52:0.981:2	./.	./.	0/1:0,45:31:45:1.00:2
chr19	8159339	rs34167077	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:19,18:30:37:0.486:2	0/1:13,17:29:30:0.567:2	./.	./.	./.	./.	./.	./.	./.	0/1:17,17:30:34:0.500:2	./.
chr19	8159362	rs7245429	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,27:32:45:0.600:2	0/1:3,66:31:69:0.957:2	./.	./.	./.	0/1:0,60:32:60:1.00:2	0/1:17,20:33:37:0.541:2	./.
chr19	8159409	rs7245552	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,28:32:48:0.583:2	0/1:14,17:32:31:0.548:2	0/1:0,4:34:4:1.00:2	0/1:27,27:32:54:0.500:2	0/1:0,79:32:79:1.00:2	./.	0/1:29,50:32:79:0.633:2	./.	0/1:0,48:34:48:1.00:2	0/1:2,45:33:47:0.957:2	./.
chr19	8160334	rs12608849	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,82:33:164:0.500:2	0/1:2,152:32:154:0.987:2	./.	./.	./.	0/1:0,107:33:107:1.00:2	0/1:79,44:32:123:0.358:2	./.
chr19	8161450	rs3829817	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:15,14:32:29:0.483:2	0/1:15,7:33:22:0.318:2	0/1:2,6:33:8:0.750:2	./.	./.	./.	0/1:29,30:31:59:0.508:2	./.	./.	0/1:23,15:32:38:0.395:2	./.
chr19	8165868	rs56182050	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,17:32:37:0.459:2	0/1:20,14:32:34:0.412:2	./.	./.	./.	0/1:2,35:32:37:0.946:2	0/1:15,15:33:30:0.500:2	./.
chr19	8167699	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.	./.	./.
chr19	8168545	rs33967815	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,36:32:80:0.450:2	0/1:20,28:33:48:0.583:2	0/1:8,10:33:18:0.556:2	0/1:58,60:31:118:0.508:2	./.	0/1:2,136:32:138:0.986:2	0/1:104,52:32:156:0.333:2	0/1:90,68:32:158:0.430:2	./.	./.	./.
chr19	8171067	rs151274163	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,49:30:85:0.576:2	./.	./.	./.	./.	./.	./.
chr19	8176009	rs17160196	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,29:30:56:0.518:2	./.	./.	./.	./.
chr19	8176569	rs35306870	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,39:30:82:0.476:2	./.	./.	./.	./.
chr19	8176580	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:33:87:0.046:2	./.	./.
chr19	8176640	rs12975322	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,48:30:95:0.505:2	./.	./.	./.	./.
chr19	8176919	rs4804264	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,52:33:109:0.477:2	0/1:20,22:32:42:0.524:2	0/1:5,6:31:11:0.545:2	0/1:76,62:32:139:0.449:2	0/1:95,104:33:199:0.523:2	./.	0/1:94,94:32:188:0.500:2	./.	0/1:74,80:33:154:0.519:2	0/1:38,47:33:85:0.553:2	./.
chr19	8176945	rs4804063	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,52:29:135:0.385:2	./.	./.	./.	./.	0/1:88,73:30:161:0.453:2	./.	./.
chr19	8176947	rs146679363	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,51:32:133:0.383:2	./.	./.	./.	./.	./.	./.	./.
chr19	8183831	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:31:152:0.026:2	./.	./.	./.	./.
chr19	8186263	rs7247560	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,41:32:85:0.482:2	./.	./.
chr19	8188828	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,4:28:24:0.167:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	8191184	rs35025963	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,35:31:81:0.432:2	0/1:57,36:31:93:0.387:2	./.	./.	./.	0/1:51,32:32:83:0.386:2	./.	./.
chr19	8191238	rs10906993	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,30:32:30:1.00:2
chr19	8191248	rs10906994	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,35:32:36:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,28:32:28:1.00:2
chr19	8191401	rs3813778	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,10:32:20:0.500:2	0/1:7,7:32:14:0.500:2	0/1:1,4:31:5:0.800:2	0/1:18,24:31:42:0.571:2	./.	0/1:0,32:30:32:1.00:2	./.	0/1:0,31:31:31:1.00:2	0/1:3,10:32:13:0.769:2	0/1:6,8:32:14:0.571:2	0/1:0,18:31:18:1.00:2
chr19	8196444	rs4804271	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:30:46:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,101:29:101:1.00:2	0/1:0,102:28:102:1.00:2	0/1:0,101:29:101:1.00:2	0/1:0,108:29:108:1.00:2	0/1:2,131:29:133:0.985:2	0/1:0,60:30:61:1.00:2	0/1:0,79:30:79:1.00:2	0/1:0,98:29:98:1.00:2
chr19	8196499	rs3813774	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,68:31:118:0.576:2	0/1:31,43:31:74:0.581:2	./.	./.
chr19	8196508	rs12974280	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,33:28:50:0.660:2	0/1:21,20:29:41:0.488:2	0/1:2,6:29:8:0.750:2	0/1:34,56:29:90:0.622:2	./.	0/1:0,111:29:111:1.00:2	0/1:53,48:29:102:0.475:2	0/1:71,50:29:121:0.413:2	./.	0/1:47,47:29:94:0.500:2	0/1:0,91:29:91:1.00:2
chr19	8196643	rs61744943	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,43:30:73:0.589:2	./.	./.	./.	./.	./.	./.
chr19	8197958	rs36124795	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,12:30:30:0.400:2	0/1:14,9:32:23:0.391:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	8201121	rs35277492	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:33:14:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	8201279	rs75077069	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,22:31:41:0.537:2	0/1:16,14:32:30:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	8203188	rs34278476	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,21:31:50:0.420:2	0/1:7,20:31:27:0.741:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	8203328	rs7246376	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,26:32:51:0.510:2	0/1:9,17:32:26:0.654:2	./.	./.	./.	0/1:26,41:30:67:0.612:2	./.	0/1:15,32:31:47:0.681:2	0/1:16,9:34:25:0.360:2	0/1:18,14:33:32:0.438:2	./.
chr19	8212263	rs11878432	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:28:4:1.00:2	0/1:2,3:31:5:0.600:2	./.	./.	0/1:3,8:29:11:0.727:2	0/1:12,8:30:20:0.400:2	0/1:2,5:31:7:0.714:2	0/1:1,4:30:5:0.800:2	./.	./.	./.
chr19	8319455	rs11881630	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,17:30:34:0.500:2	0/1:8,10:31:18:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	8320555	rs17159388	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,28:32:72:0.389:2	0/1:13,14:32:27:0.519:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	8321182	rs28334	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,13:31:33:0.394:2	./.	./.	0/1:88,105:31:193:0.544:2	./.	0/1:102,76:31:178:0.427:2	0/1:91,86:32:178:0.486:2	./.	./.
chr19	8321497	rs199930954	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:99,99:32:198:0.500:2	./.	./.	./.	./.	./.	./.
chr19	8321915	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:32:193:0.026:2	./.	./.	./.
chr19	8321937	rs1127912	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,96:32:97:0.990:2	0/1:1,65:31:66:0.985:2	./.	./.	0/1:122,61:31:183:0.333:2	0/1:78,98:31:176:0.557:2	./.	0/1:94,79:32:173:0.457:2	./.	./.	./.
chr19	8321946	rs36247	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,24:30:24:1.00:2	0/1:90,67:28:157:0.427:2	./.	0/1:104,70:30:174:0.402:2	./.	0/1:81,74:30:155:0.477:2	0/1:1,135:30:136:0.993:2	0/1:78,72:29:150:0.480:2	0/1:54,66:28:120:0.550:2
chr19	8326866	rs17160348	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:25,18:26:43:0.419:2	0/1:10,15:32:25:0.600:2	./.	./.	0/1:19,12:29:31:0.387:2	0/1:21,28:30:49:0.571:2	./.	0/1:28,32:30:60:0.533:2	./.	./.	./.
chr19	8326904	rs36259	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,15:31:25:0.600:2	0/1:12,9:30:21:0.429:2	./.	0/1:0,13:30:13:1.00:2	0/1:12,9:29:21:0.429:2	./.	0/1:0,23:31:24:1.00:2	0/1:24,20:28:44:0.455:2	0/1:0,20:31:21:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,12:29:12:1.00:2
chr19	8326944	rs17160349	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,6:33:12:0.500:2	0/1:7,7:33:14:0.500:2	./.	./.	0/1:5,7:32:12:0.583:2	0/1:7,6:31:13:0.462:2	./.	0/1:6,10:32:16:0.625:2	./.	./.	./.
chr19	8367359	rs2227289	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,35:30:93:0.376:2	./.
chr19	8367709	rs2336573	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,31:33:60:0.517:2	./.
chr19	8368758	rs2232784	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,32:31:46:0.696:2	./.
chr19	8368794	rs2232783	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,48:30:67:0.716:2	./.
chr19	8373152	rs2232775	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.
chr19	8376431	rs561	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:28,34:31:62:0.548:2	0/1:26,13:33:39:0.333:2	./.	0/1:48,44:31:92:0.478:2	./.	./.	./.	./.	0/1:39,58:32:97:0.598:2	./.	./.
chr19	8381489	rs12986323	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,31:33:75:0.413:2	./.	./.	./.	./.	./.	./.	./.
chr19	8389405	rs12981073	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,30:32:81:0.375:2	0/1:35,35:32:70:0.500:2	0/1:0,7:30:7:1.00:2	0/1:65,69:32:134:0.515:2	0/1:77,83:32:160:0.519:2	./.	./.	./.	0/1:58,58:33:116:0.500:2	./.	./.
chr19	8389520	rs1019757	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,45:32:79:0.570:2
chr19	8398006	rs7249069	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,30:31:62:0.484:2	0/1:54,39:31:93:0.419:2	./.	./.	./.	0/1:31,27:32:58:0.466:2	./.	./.
chr19	8398975	rs2913955	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,9:31:14:0.643:2
chr19	8399272	rs8106699	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,23:31:48:0.479:2	0/1:14,16:31:30:0.533:2	0/1:0,12:31:12:1.00:2	0/1:61,35:32:96:0.365:2	0/1:44,42:31:86:0.488:2	./.	./.	./.	0/1:55,24:32:79:0.304:2	./.	./.
chr19	8399628	rs710949	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:33:4:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr19	8399635	rs890853	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr19	8402645	rs2913958	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,10:33:27:0.370:2
chr19	8436164	rs1044250	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,18:31:33:0.545:2	0/1:3,7:31:10:0.700:2	./.	./.	./.	0/1:25,24:31:49:0.490:2	./.	0/1:28,27:31:55:0.491:2	0/1:1,30:31:31:0.968:2	0/1:0,41:32:41:1.00:2	./.
chr19	8438716	rs11672433	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,31:31:58:0.534:2	./.	./.	./.	./.	./.	./.	0/1:17,23:29:40:0.575:2
chr19	8464787	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:32:109:0.037:2	./.
chr19	8464927	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,16:29:48:0.333:2	./.	./.	./.	./.	./.	./.	./.
chr19	8467090	rs34741553	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,19:30:45:0.422:2	./.
chr19	8468337	rs2230876	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,7:28:14:0.500:2	0/1:53,63:31:116:0.543:2	0/1:70,93:30:163:0.571:2	./.	./.	./.	./.	./.	0/1:29,23:32:52:0.442:2
chr19	8486884	rs1133893	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:23,14:30:37:0.378:2	0/1:1,13:30:14:0.929:2	./.	./.	0/1:38,32:28:70:0.457:2	./.	0/1:33,23:28:56:0.411:2	0/1:40,24:28:64:0.375:2	./.	./.	./.
chr19	8503345	rs34099346	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,8:32:37:0.216:2	./.	0/1:20,14:30:34:0.412:2	./.	0/1:20,30:29:50:0.600:2	0/1:22,7:30:29:0.241:2	0/1:17,3:30:20:0.150:2	./.
chr19	8527415	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2	./.	./.
chr19	8553630	rs6992	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,96:30:97:1.00:2	0/1:0,42:31:42:1.00:2	./.	0/1:0,105:31:105:1.00:2	0/1:0,154:30:154:1.00:2	0/1:1,116:30:118:0.991:2	0/1:0,143:31:143:1.00:2	0/1:1,151:31:152:0.993:2	0/1:0,115:30:116:1.00:2	0/1:0,109:30:110:1.00:2	0/1:0,104:30:104:1.00:2
chr19	8553645	rs184627584	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,58:31:109:0.532:2	./.	./.	./.	./.	./.	./.	./.
chr19	8555082	rs56293063	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,10:29:29:0.345:2
chr19	8563456	rs2910435	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,7:24:7:1.00:2	./.	./.	0/1:0,9:28:9:1.00:2	0/1:0,3:29:3:1.00:2	0/1:0,5:27:5:1.00:2	./.	0/1:0,6:30:6:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,5:28:5:1.00:2	./.
chr19	8564288	rs58466313	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:32:11:0.636:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	8564466	rs371461475	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:2,6:24:8:0.750:2	./.	./.	0/1:9,3:30:12:0.250:2	./.	./.	./.	./.	./.	./.	0/1:5,6:27:11:0.545:2
chr19	8564469	rs4990821	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:2,6:31:8:0.750:2	./.	./.	0/1:11,3:33:14:0.214:2	./.	0/1:8,3:30:11:0.273:2	./.	./.	./.	./.	0/1:5,6:27:11:0.545:2
chr19	8564474	rs4239541	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,7:31:8:0.875:2	./.	./.	./.	./.	0/1:8,4:31:12:0.333:2	./.	./.	0/1:2,2:36:4:0.500:2	./.	0/1:3,7:32:10:0.700:2
chr19	8564523	rs4804305	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,15:29:15:1.00:2	0/1:0,6:32:6:1.00:2	./.	0/1:18,4:34:22:0.182:2	0/1:24,10:32:34:0.294:2	0/1:15,11:31:26:0.423:2	./.	./.	0/1:0,23:33:23:1.00:2	0/1:22,8:33:30:0.267:2	0/1:0,31:32:31:1.00:2
chr19	8567475	rs968502	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,18:29:18:1.00:2	0/1:2,15:29:17:0.882:2	0/1:0,7:28:7:1.00:2	./.	0/1:36,25:28:61:0.410:2	./.	./.	./.	0/1:21,25:31:46:0.543:2	0/1:17,20:29:37:0.541:2	0/1:0,16:28:16:1.00:2
chr19	8567500	rs968501	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,15:30:15:1.00:2	0/1:2,14:31:16:0.875:2	0/1:0,6:32:6:1.00:2	./.	0/1:32,22:30:54:0.407:2	./.	./.	./.	0/1:13,20:29:33:0.606:2	0/1:13,18:31:31:0.581:2	0/1:0,12:31:12:1.00:2
chr19	8576670	rs7175	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	0/1:2,3:30:5:0.600:2	./.
chr19	8578000	rs1064010	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,34:32:34:1.00:2	0/1:0,14:31:14:1.00:2	0/1:1,2:31:3:0.667:2	./.	0/1:14,10:28:24:0.417:2	./.	./.	./.	0/1:10,13:32:23:0.565:2	0/1:9,15:31:24:0.625:2	0/1:0,20:31:20:1.00:2
chr19	8578035	rs8100431	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:31:14:0.286:2	./.	0/1:13,10:29:23:0.435:2	./.	0/1:13,5:31:18:0.278:2	./.	./.	./.
chr19	8578118	rs1064009	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,11:33:12:0.917:2	0/1:0,9:31:9:1.00:2	./.	./.	0/1:6,4:32:10:0.400:2	./.	./.	./.	0/1:7,9:31:16:0.563:2	0/1:4,8:30:12:0.667:2	0/1:0,9:32:9:1.00:2
chr19	8578199	rs1141019	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,5:27:5:1.00:2	./.	0/1:0,3:28:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	8587614	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:33:47:0.085:2	./.
chr19	8618110	rs35778736	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,81:31:192:0.422:2	./.	./.	./.	./.	./.
chr19	8619417	rs200635354	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,34:32:70:0.486:2	0/1:13,22:33:35:0.629:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	8642160	rs4542783	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:33,31:33:64:0.484:2	0/1:28,14:33:42:0.333:2	0/1:0,10:31:10:1.00:2	./.	0/1:0,57:32:57:1.00:2	./.	./.	0/1:48,34:32:82:0.415:2	./.	0/1:40,47:33:87:0.540:2	0/1:47,31:30:78:0.397:2
chr19	8645786	rs7252299	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,9:32:9:1.00:2	0/1:0,7:31:7:1.00:2	./.	0/1:0,10:33:10:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,9:31:9:1.00:2
chr19	8651562	rs4476282	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:10,5:27:15:0.333:2	0/1:12,9:30:21:0.429:2	./.	./.	0/1:11,17:29:28:0.607:2	./.	./.	./.	./.	0/1:18,7:25:25:0.280:2	./.
chr19	8660775	rs75734496	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:28:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	8662196	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	8668752	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,5:27:137:0.036:2
chr19	8669931	rs7255721	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,16:32:39:0.410:2	0/1:11,7:33:18:0.389:2	0/1:2,3:33:5:0.600:2	0/1:1,39:32:40:0.975:2	0/1:0,21:32:21:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,31:34:31:1.00:2	0/1:12,13:32:25:0.520:2	0/1:0,32:31:32:1.00:2
chr19	8670147	rs62621197	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,6:29:7:0.857:2
chr19	8808240	rs73507819	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,30:31:65:0.462:2	./.	./.	./.	./.
chr19	8808373	rs4804079	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:4,4:29:8:0.500:2	0/1:2,4:31:6:0.667:2	./.	0/1:0,6:32:6:1.00:2	./.	0/1:0,9:30:9:1.00:2	0/1:1,4:26:5:0.800:2	0/1:0,11:28:11:1.00:2	./.	0/1:8,3:28:11:0.273:2	0/1:0,4:31:4:1.00:2
chr19	8808434	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2
chr19	8808900	rs10410943	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,22:30:48:0.458:2	0/1:32,10:29:42:0.238:2	0/1:0,4:28:4:1.00:2	0/1:0,60:30:60:1.00:2	0/1:47,36:28:83:0.434:2	0/1:0,90:29:90:1.00:2	0/1:33,22:30:55:0.400:2	0/1:1,67:29:68:0.985:2	0/1:46,30:31:76:0.395:2	0/1:60,38:30:98:0.388:2	0/1:0,42:30:42:1.00:2
chr19	8808942	rs2340550	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,18:31:44:0.409:2	0/1:29,9:32:38:0.237:2	0/1:0,8:33:8:1.00:2	0/1:0,31:33:31:1.00:2	0/1:30,15:32:45:0.333:2	0/1:1,54:31:55:0.982:2	0/1:21,9:32:30:0.300:2	0/1:1,29:32:30:0.967:2	0/1:34,18:34:52:0.346:2	0/1:39,21:32:60:0.350:2	0/1:0,27:33:27:1.00:2
chr19	8809100	rs62117992	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,6:30:12:0.500:2	0/1:3,3:30:6:0.500:2	0/1:11,6:27:17:0.353:2	./.	./.	./.
chr19	8841558	rs28324	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,112:31:112:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,25:32:25:1.00:2	0/1:82,93:32:175:0.531:2	0/1:0,183:31:183:1.00:2	0/1:1,149:32:150:0.993:2	0/1:0,182:32:182:1.00:2	0/1:101,82:32:183:0.448:2	0/1:84,79:32:163:0.485:2	0/1:1,147:31:148:0.993:2	./.
chr19	8931881	rs61746368	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,51:31:124:0.411:2	./.	./.	./.	./.	./.	./.
chr19	8953801	rs2969292	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,51:33:52:0.981:2	0/1:0,36:32:36:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,56:32:56:1.00:2	0/1:1,74:32:75:0.987:2	0/1:1,70:34:71:0.986:2	0/1:0,50:32:50:1.00:2	0/1:0,60:32:60:1.00:2
chr19	8953922	rs2972588	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,21:33:21:1.00:2	0/1:0,16:32:16:1.00:2	./.	0/1:0,21:32:21:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,20:33:20:1.00:2
chr19	8959654	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,5:27:150:0.033:2	0/1:75,7:31:82:0.085:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	8961981	rs1035442	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:31:42:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,100:30:100:1.00:2	0/1:0,87:30:88:1.00:2	0/1:0,76:30:76:1.00:2	0/1:0,102:31:102:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,46:31:46:1.00:2
chr19	8962389	rs72999925	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,18:30:38:0.474:2	./.	./.	./.	./.	./.	./.
chr19	8973586	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2	./.
chr19	8987218	rs3764556	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,83:31:183:0.454:2	0/1:117,56:30:173:0.324:2	./.	./.	./.	0/1:97,80:31:177:0.452:2	./.	./.
chr19	8993018	rs61742668	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,11:31:13:0.846:2	./.	./.	0/1:65,41:32:106:0.387:2	./.	./.	./.	./.	0/1:59,42:32:101:0.416:2
chr19	8996019	rs73493652	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,11:29:36:0.306:2	0/1:9,5:28:14:0.357:2	./.	./.	./.	0/1:13,12:31:25:0.480:2	./.	./.
chr19	8999395	rs200813849	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,10:29:90:0.111:2	0/1:59,6:32:65:0.092:2	./.	./.	./.	./.	./.
chr19	8999446	rs201254514	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:71,5:32:76:0.066:2	0/1:48,8:26:56:0.143:2	./.	0/1:59,8:31:67:0.119:2	0/1:60,18:29:78:0.231:2	0/1:53,13:30:66:0.197:2	0/1:66,6:25:72:0.083:2	0/1:71,8:31:79:0.101:2	0/1:65,7:30:72:0.097:2	0/1:60,6:29:66:0.091:2	./.
chr19	8999453	rs11085765	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:7,61:31:68:0.897:2	0/1:8,40:31:49:0.833:2	0/1:1,4:30:5:0.800:2	0/1:46,14:30:60:0.233:2	0/1:51,26:30:77:0.338:2	0/1:14,47:30:61:0.770:2	0/1:8,60:29:68:0.882:2	0/1:9,67:30:76:0.882:2	0/1:7,54:30:61:0.885:2	0/1:6,51:30:57:0.895:2	0/1:6,64:30:70:0.914:2
chr19	8999474	rs199946350	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:59,5:29:64:0.078:2	0/1:42,7:28:49:0.143:2	./.	0/1:62,8:32:70:0.114:2	0/1:66,18:32:84:0.214:2	0/1:61,13:32:74:0.176:2	0/1:64,4:30:68:0.059:2	0/1:80,7:31:87:0.080:2	0/1:57,6:32:63:0.095:2	0/1:63,6:31:69:0.087:2	./.
chr19	8999488	rs200071553	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:45,7:31:52:0.135:2	./.	0/1:58,6:32:64:0.094:2	0/1:59,9:30:68:0.132:2	0/1:66,8:29:74:0.108:2	0/1:67,4:30:71:0.056:2	0/1:80,4:33:84:0.048:2	0/1:58,4:33:62:0.065:2	0/1:70,5:31:75:0.067:2	./.
chr19	9001822	rs12976111	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:33:58:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,12:32:12:1.00:2	0/1:51,48:32:99:0.485:2	0/1:48,52:32:100:0.520:2	0/1:0,106:32:106:1.00:2	0/1:2,74:32:76:0.974:2	0/1:0,86:32:86:1.00:2	0/1:0,60:33:60:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,67:33:68:1.00:2
chr19	9001833	rs12976122	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:28:62:1.00:2	0/1:0,51:28:51:1.00:2	0/1:0,14:26:14:1.00:2	0/1:61,49:29:110:0.445:2	0/1:50,55:28:105:0.524:2	0/1:0,125:28:125:1.00:2	0/1:2,85:28:87:0.977:2	0/1:0,96:28:96:1.00:2	0/1:0,72:29:72:1.00:2	0/1:0,69:28:69:1.00:2	0/1:0,73:27:73:1.00:2
chr19	9001835	rs12985778	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:31:62:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,14:29:14:1.00:2	0/1:64,49:30:113:0.434:2	0/1:51,55:31:106:0.519:2	0/1:0,125:30:125:1.00:2	0/1:2,85:30:87:0.977:2	0/1:0,96:30:96:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,73:30:73:1.00:2
chr19	9002504	rs78327556	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:85,16:28:102:0.158:2	0/1:40,12:30:52:0.231:2	0/1:13,5:30:18:0.278:2	0/1:100,27:30:127:0.213:2	0/1:108,28:30:136:0.206:2	0/1:101,20:29:121:0.165:2	0/1:95,35:30:130:0.269:2	0/1:119,36:30:155:0.232:2	0/1:107,11:29:118:0.093:2	0/1:110,17:30:127:0.134:2	0/1:60,9:31:69:0.130:2
chr19	9002519	rs150783178	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,17:31:105:0.162:2	0/1:47,12:32:59:0.203:2	0/1:13,5:32:18:0.278:2	0/1:119,28:30:147:0.190:2	0/1:121,28:31:149:0.188:2	0/1:109,19:31:128:0.148:2	0/1:116,35:32:151:0.232:2	0/1:117,36:31:153:0.235:2	0/1:125,12:31:137:0.088:2	0/1:115,17:32:132:0.129:2	0/1:73,9:32:82:0.110:2
chr19	9002615	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:33:102:0.039:2	./.
chr19	9003618	rs11085776	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,110:32:110:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,9:31:9:1.00:2	0/1:48,59:31:107:0.551:2	0/1:52,46:31:98:0.469:2	0/1:0,113:31:113:1.00:2	0/1:2,92:32:94:0.979:2	0/1:0,112:31:112:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,94:31:94:1.00:2	0/1:0,77:32:77:1.00:2
chr19	9003645	rs11085777	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,12:32:12:1.00:2	./.	./.	0/1:70,37:31:107:0.346:2	0/1:61,42:31:103:0.408:2	0/1:70,50:31:120:0.417:2	0/1:47,51:33:98:0.520:2	0/1:0,92:31:92:1.00:2	0/1:0,90:31:90:1.00:2
chr19	9005605	rs74835716	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,5:32:160:0.031:2	./.	./.	./.	./.	./.
chr19	9005616	rs78831402	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,6:27:161:0.038:2	./.	./.	./.	./.	./.
chr19	9005670	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:33:125:0.032:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	9005674	rs4804091	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,111:31:113:0.982:2	0/1:0,71:31:71:1.00:2	./.	0/1:57,76:30:133:0.571:2	0/1:68,60:31:128:0.469:2	0/1:54,65:31:119:0.546:2	0/1:80,69:31:149:0.463:2	0/1:66,71:31:137:0.518:2	0/1:67,69:31:137:0.507:2	./.	./.
chr19	9005719	rs4804375	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:30:69:1.00:2	0/1:1,43:30:44:0.977:2	0/1:0,10:30:10:1.00:2	0/1:35,50:29:85:0.588:2	0/1:40,47:30:87:0.540:2	0/1:0,73:30:73:1.00:2	0/1:1,76:30:77:0.987:2	0/1:0,93:30:93:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,82:30:82:1.00:2	0/1:0,91:29:91:1.00:2
chr19	9006365	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,4:31:50:0.080:2	./.	./.	./.	./.	./.	./.	./.
chr19	9006370	rs79341062	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,14:32:33:0.424:2	0/1:20,9:33:29:0.310:2	./.	0/1:36,15:32:51:0.294:2	0/1:37,12:32:49:0.245:2	0/1:31,8:32:39:0.205:2	0/1:29,13:33:42:0.310:2	0/1:32,7:32:39:0.179:2	0/1:38,11:33:49:0.224:2	0/1:39,9:33:48:0.188:2	0/1:45,7:34:52:0.135:2
chr19	9006385	rs201630633	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,6:28:54:0.111:2	./.
chr19	9006392	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,5:32:54:0.093:2	./.	./.	./.	./.
chr19	9006749	rs75444444	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,56:32:121:0.463:2	0/1:61,47:31:108:0.435:2	./.	./.	./.	./.	./.	./.
chr19	9011412	rs114676657	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:48,52:32:100:0.520:2	0/1:21,35:32:56:0.625:2	./.	0/1:70,68:31:138:0.493:2	./.	./.	./.	./.	./.	./.	./.
chr19	9012823	rs4992693	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:126,12:32:138:0.087:2	0/1:145,6:32:151:0.040:2	0/1:140,5:28:146:0.034:2	0/1:161,4:31:165:0.024:2	0/1:154,8:28:162:0.049:2	0/1:141,4:34:145:0.028:2	./.	./.
chr19	9012840	rs4992692	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:123,7:33:130:0.054:2	0/1:95,11:32:106:0.104:2	./.	0/1:100,16:32:116:0.138:2	0/1:132,15:32:147:0.102:2	0/1:123,10:32:133:0.075:2	0/1:150,6:32:157:0.038:2	0/1:128,19:32:147:0.129:2	0/1:133,10:31:143:0.070:2	0/1:132,5:30:137:0.036:2	0/1:129,6:33:135:0.044:2
chr19	9012867	rs202204633	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,5:32:125:0.040:2	./.	./.
chr19	9014551	rs12459127	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,39:32:121:0.325:2	0/1:52,36:32:88:0.409:2	0/1:10,4:32:14:0.286:2	0/1:109,51:32:160:0.319:2	0/1:87,35:32:122:0.287:2	0/1:83,53:32:136:0.390:2	./.	0/1:5,106:32:112:0.955:2	0/1:104,48:32:152:0.316:2	./.	./.
chr19	9014569	rs12462963	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,35:31:124:0.287:2	0/1:60,31:32:91:0.341:2	0/1:11,3:32:14:0.214:2	0/1:116,49:33:166:0.297:2	0/1:106,33:32:139:0.237:2	0/1:96,47:32:143:0.329:2	./.	0/1:5,91:32:96:0.948:2	0/1:124,42:31:166:0.253:2	./.	./.
chr19	9015692	rs377699177	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,7:29:168:0.042:2
chr19	9015723	rs371329008	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,7:31:145:0.048:2
chr19	9017383	rs75995954	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,5:32:176:0.028:2
chr19	9018208	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:30:118:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	9018508	rs74488264	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:106,6:33:112:0.054:2	./.	./.	0/1:134,7:34:141:0.050:2	0/1:133,9:33:142:0.063:2	0/1:146,7:33:153:0.046:2	0/1:144,5:33:149:0.034:2	0/1:140,5:33:145:0.034:2	./.	0/1:150,8:32:158:0.051:2	./.
chr19	9018539	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:95,5:32:101:0.050:2	./.	./.	0/1:88,7:31:95:0.074:2	0/1:90,9:30:100:0.091:2	0/1:132,7:31:139:0.050:2	0/1:85,5:30:90:0.056:2	0/1:112,5:32:117:0.043:2	./.	0/1:125,8:31:133:0.060:2	./.
chr19	9018540	rs200155559	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:97,5:31:102:0.049:2	./.	./.	0/1:88,7:31:95:0.074:2	0/1:92,9:31:101:0.089:2	0/1:131,8:31:139:0.058:2	0/1:80,8:30:88:0.091:2	0/1:109,4:31:113:0.035:2	0/1:103,6:31:109:0.055:2	0/1:124,8:32:132:0.061:2	./.
chr19	9019605	rs12981679	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,81:32:162:0.500:2	0/1:46,33:32:79:0.418:2	0/1:0,23:33:23:1.00:2	0/1:1,159:32:160:0.994:2	0/1:1,122:31:123:0.992:2	0/1:1,169:32:171:0.994:2	0/1:2,141:32:143:0.986:2	0/1:0,172:32:172:1.00:2	0/1:0,174:33:174:1.00:2	0/1:94,74:32:168:0.440:2	0/1:1,169:32:170:0.994:2
chr19	9020154	rs11882881	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,14:30:14:1.00:2	./.	./.	0/1:38,34:28:72:0.472:2	./.	./.	0/1:0,85:30:85:1.00:2	./.	0/1:32,38:30:70:0.543:2
chr19	9024115	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:32:84:0.049:2	./.	./.	./.	./.	./.
chr19	9024871	rs62118272	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:35,43:32:78:0.551:2	0/1:22,17:32:39:0.436:2	./.	./.	./.	./.	./.	0/1:55,43:31:98:0.439:2	./.	./.	./.
chr19	9024994	rs67631215	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,26:31:45:0.578:2	0/1:1,24:30:25:0.960:2	0/1:25,22:31:47:0.468:2	./.	0/1:23,31:32:54:0.574:2	./.	0/1:30,27:32:57:0.474:2	0/1:33,28:30:61:0.459:2
chr19	9025584	rs77811999	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:45,5:31:50:0.100:2	./.	0/1:75,13:32:88:0.148:2	0/1:65,9:32:74:0.122:2	0/1:81,8:31:89:0.090:2	0/1:73,7:31:80:0.088:2	0/1:116,12:32:128:0.094:2	./.	0/1:65,7:30:72:0.097:2	./.
chr19	9025604	rs200791776	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:85,6:33:91:0.066:2	0/1:57,7:32:64:0.109:2	./.	0/1:96,18:33:114:0.158:2	0/1:76,14:32:90:0.156:2	0/1:106,17:32:123:0.138:2	0/1:86,13:33:99:0.131:2	0/1:133,19:33:152:0.125:2	0/1:104,8:33:112:0.071:2	0/1:76,15:32:91:0.165:2	0/1:99,4:33:103:0.039:2
chr19	9025654	rs201931630	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,5:31:95:0.053:2	./.
chr19	9026257	rs62118274	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:76,52:32:128:0.406:2	0/1:37,38:32:75:0.507:2	./.	./.	./.	./.	./.	0/1:97,86:31:183:0.470:2	./.	./.	./.
chr19	9028373	rs56396897	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,70:31:120:0.583:2	0/1:2,158:31:160:0.988:2	0/1:80,48:31:128:0.375:2	./.	0/1:73,99:31:172:0.576:2	./.	0/1:53,63:32:116:0.543:2	0/1:53,49:32:102:0.480:2
chr19	9033636	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,76:30:147:0.517:2	./.	./.	./.
chr19	9043416	rs17417801	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,19:30:39:0.487:2	./.	./.	./.	./.	./.	./.	./.
chr19	9046726	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:30:128:0.031:2	./.	./.
chr19	9046876	rs4804378	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,35:32:75:0.467:2	0/1:23,19:32:42:0.452:2	./.	./.	./.	0/1:48,46:31:94:0.489:2	0/1:40,34:31:74:0.459:2	./.	./.	./.	0/1:46,44:31:90:0.489:2
chr19	9047267	rs10410169	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,42:30:98:0.429:2	0/1:32,50:31:82:0.610:2	0/1:65,45:31:110:0.409:2	./.	0/1:54,50:32:104:0.481:2	0/1:48,43:32:91:0.473:2	./.
chr19	9047293	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:33:124:0.032:2
chr19	9047305	rs10415818	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,23:29:71:0.324:2	0/1:33,32:29:66:0.492:2	0/1:52,38:29:90:0.422:2	./.	0/1:37,26:30:63:0.413:2	0/1:45,21:29:66:0.318:2	./.
chr19	9048035	rs10417358	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,61:32:145:0.421:2	0/1:119,69:31:188:0.367:2	0/1:95,74:31:169:0.438:2	./.	0/1:87,66:32:153:0.431:2	0/1:56,48:33:104:0.462:2	./.
chr19	9048170	rs10417600	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,20:31:43:0.465:2	0/1:52,28:31:80:0.350:2	0/1:20,14:31:34:0.412:2	./.	0/1:22,41:33:63:0.651:2	0/1:33,23:31:56:0.411:2	./.
chr19	9048320	rs56334501	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:29,28:32:57:0.491:2	0/1:26,8:31:34:0.235:2	0/1:6,3:31:9:0.333:2	./.	./.	0/1:30,21:31:51:0.412:2	0/1:15,25:31:40:0.625:2	./.	./.	./.	0/1:34,28:31:62:0.452:2
chr19	9048342	rs10854118	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,30:33:62:0.484:2	0/1:8,24:32:32:0.750:2	./.	0/1:1,74:30:75:0.987:2	0/1:34,26:31:60:0.433:2	./.	./.	0/1:0,49:31:49:1.00:2	./.	0/1:42,32:31:74:0.432:2	0/1:31,36:30:67:0.537:2
chr19	9048421	rs56194405	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:30,23:29:53:0.434:2	0/1:17,11:26:28:0.393:2	0/1:7,3:30:10:0.300:2	./.	./.	0/1:29,14:26:43:0.326:2	0/1:19,8:27:27:0.296:2	./.	./.	./.	0/1:35,13:29:48:0.271:2
chr19	9048895	rs2012761	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,90:32:94:0.957:2	./.	./.	./.	./.	./.	./.	./.
chr19	9049149	rs12461007	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,59:30:136:0.434:2	0/1:71,67:30:138:0.486:2	0/1:83,62:31:145:0.428:2	./.	0/1:94,70:33:164:0.427:2	0/1:55,43:32:98:0.439:2	./.
chr19	9049339	rs11883220	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:55,45:33:100:0.450:2	0/1:48,21:32:69:0.304:2	0/1:16,9:33:25:0.360:2	./.	0/1:40,38:32:78:0.487:2	0/1:1,116:32:117:0.991:2	0/1:2,100:32:102:0.980:2	./.	0/1:64,70:33:134:0.522:2	0/1:47,35:33:82:0.427:2	0/1:64,74:33:138:0.536:2
chr19	9049396	rs10425044	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,40:32:88:0.455:2	0/1:71,54:32:125:0.432:2	0/1:50,44:32:94:0.468:2	./.	0/1:71,69:33:140:0.493:2	0/1:52,37:32:89:0.416:2	./.
chr19	9049726	rs11670328	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:77,68:32:145:0.469:2	0/1:42,46:32:89:0.523:2	./.	./.	0/1:58,65:31:123:0.528:2	./.	./.	0/1:2,151:31:153:0.987:2	./.	0/1:62,75:31:137:0.547:2	0/1:81,72:32:153:0.471:2
chr19	9049910	rs56307190	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:65,65:32:130:0.500:2	0/1:60,45:31:105:0.429:2	0/1:9,12:31:21:0.571:2	./.	./.	0/1:63,53:30:116:0.457:2	0/1:80,67:32:147:0.456:2	./.	./.	./.	0/1:86,80:32:166:0.482:2
chr19	9050219	rs147543535	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,80:32:187:0.428:2	./.	./.
chr19	9054251	rs201824294	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:84,12:23:96:0.125:2	./.	0/1:23,8:19:31:0.258:2	0/1:83,16:20:100:0.162:2	0/1:80,17:19:97:0.175:2	0/1:77,9:17:86:0.105:2	0/1:82,19:19:101:0.188:2	0/1:91,18:17:109:0.165:2	0/1:101,10:23:111:0.090:2	0/1:84,16:20:101:0.160:2	0/1:90,16:23:106:0.151:2
chr19	9056930	rs918535	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,37:33:66:0.561:2	0/1:35,37:32:72:0.514:2	0/1:22,35:32:57:0.614:2	./.	0/1:58,59:33:117:0.504:2	0/1:27,32:32:59:0.542:2	./.
chr19	9056941	rs10410136	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,38:32:63:0.603:2	0/1:34,36:31:70:0.514:2	0/1:20,38:33:58:0.655:2	./.	0/1:52,54:33:106:0.509:2	0/1:24,38:32:62:0.613:2	./.
chr19	9056982	rs11670318	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:47,47:31:94:0.500:2	0/1:23,28:31:51:0.549:2	./.	./.	0/1:61,26:30:87:0.299:2	./.	./.	0/1:0,82:30:82:1.00:2	./.	0/1:36,26:32:62:0.419:2	0/1:56,45:32:101:0.446:2
chr19	9056989	rs4804381	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:50,44:32:94:0.468:2	0/1:28,21:33:49:0.429:2	0/1:8,3:34:11:0.273:2	./.	./.	0/1:50,24:31:74:0.324:2	0/1:52,20:33:72:0.278:2	./.	./.	./.	0/1:55,49:33:104:0.471:2
chr19	9057408	rs1423051	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,64:33:65:0.985:2	0/1:0,35:32:35:1.00:2	0/1:0,10:31:10:1.00:2	0/1:1,74:32:75:0.987:2	0/1:0,59:31:59:1.00:2	0/1:1,49:31:50:0.980:2	0/1:2,36:32:38:0.947:2	0/1:0,66:31:66:1.00:2	0/1:27,30:33:57:0.526:2	0/1:0,54:32:54:1.00:2	0/1:0,55:32:55:1.00:2
chr19	9057687	rs1895364	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,111:32:111:1.00:2	0/1:0,79:32:79:1.00:2	0/1:7,8:31:15:0.533:2	0/1:0,151:32:151:1.00:2	0/1:0,98:31:98:1.00:2	0/1:1,116:32:117:0.991:2	0/1:1,91:31:92:0.989:2	0/1:2,134:32:137:0.985:2	0/1:69,52:32:121:0.430:2	0/1:0,114:32:114:1.00:2	0/1:0,158:32:158:1.00:2
chr19	9057704	rs12984130	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,37:31:105:0.356:2	0/1:71,60:30:131:0.458:2	0/1:61,42:31:103:0.408:2	./.	0/1:72,54:32:126:0.429:2	0/1:65,58:31:123:0.472:2	./.
chr19	9057721	rs2216662	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,144:32:144:1.00:2	0/1:1,81:32:82:0.988:2	0/1:8,5:30:13:0.385:2	./.	0/1:43,65:31:108:0.602:2	0/1:81,74:30:155:0.477:2	0/1:61,55:31:116:0.474:2	0/1:2,167:31:169:0.988:2	./.	0/1:51,63:32:114:0.553:2	0/1:2,175:32:177:0.989:2
chr19	9057750	rs12982113	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,54:31:127:0.425:2	0/1:112,82:31:194:0.423:2	0/1:73,58:32:131:0.443:2	./.	0/1:96,67:32:163:0.411:2	0/1:89,62:32:151:0.411:2	./.
chr19	9057896	rs12984471	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,42:32:123:0.341:2	0/1:90,65:32:155:0.419:2	0/1:75,37:32:112:0.330:2	./.	0/1:76,77:33:153:0.503:2	0/1:70,44:33:114:0.386:2	./.
chr19	9058624	rs11878666	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:67,60:32:127:0.472:2	0/1:39,45:32:84:0.536:2	0/1:14,9:31:23:0.391:2	./.	./.	0/1:85,103:30:189:0.548:2	0/1:98,89:31:187:0.476:2	./.	./.	./.	0/1:99,77:30:176:0.438:2
chr19	9058907	rs1833777	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:40,34:33:75:0.459:2	0/1:20,25:31:45:0.556:2	./.	0/1:0,61:32:62:1.00:2	0/1:35,28:32:63:0.444:2	./.	./.	0/1:3,62:32:65:0.954:2	./.	0/1:35,37:33:72:0.514:2	0/1:46,33:33:79:0.418:2
chr19	9058942	rs1833778	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,102:31:105:0.971:2	0/1:1,62:31:63:0.984:2	0/1:3,9:32:12:0.750:2	0/1:83,4:32:87:0.046:2	0/1:38,44:31:82:0.537:2	0/1:48,51:30:99:0.515:2	0/1:48,47:31:95:0.495:2	0/1:2,100:30:102:0.980:2	./.	0/1:45,54:30:99:0.545:2	0/1:0,108:31:108:1.00:2
chr19	9059159	rs12462651	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,83:32:83:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr19	9059181	rs12459532	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,55:31:103:0.534:2	./.	./.	./.	./.	./.	./.	./.
chr19	9059232	rs12710265	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,35:30:77:0.455:2	0/1:55,63:30:118:0.534:2	0/1:46,51:31:97:0.526:2	./.	0/1:61,58:31:119:0.487:2	0/1:52,38:30:90:0.422:2	./.
chr19	9059307	rs12461695	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,110:31:111:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr19	9059808	rs7508222	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,180:32:180:1.00:2	0/1:0,108:31:108:1.00:2	0/1:16,11:30:27:0.407:2	0/1:0,170:32:171:1.00:2	0/1:0,158:31:158:1.00:2	0/1:0,160:31:160:1.00:2	0/1:1,164:32:165:0.994:2	0/1:0,170:32:170:1.00:2	0/1:88,80:32:168:0.476:2	0/1:1,175:32:177:0.994:2	0/1:0,172:31:172:1.00:2
chr19	9060059	rs12977368	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,26:32:69:0.377:2	0/1:56,46:32:102:0.451:2	0/1:73,27:32:100:0.270:2	./.	0/1:62,36:34:98:0.367:2	0/1:45,29:32:74:0.392:2	./.
chr19	9060085	rs4804382	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:35,64:31:99:0.646:2	0/1:25,29:30:54:0.537:2	0/1:8,5:32:13:0.385:2	./.	./.	0/1:35,57:30:92:0.620:2	0/1:25,62:31:87:0.713:2	./.	./.	./.	0/1:64,52:30:116:0.448:2
chr19	9060125	rs12972088	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,27:29:68:0.403:2	0/1:52,46:29:98:0.469:2	0/1:69,29:31:98:0.296:2	./.	0/1:53,47:30:102:0.470:2	0/1:47,26:31:73:0.356:2	./.
chr19	9060541	rs11882256	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:99,85:32:184:0.462:2	0/1:57,61:31:118:0.517:2	0/1:35,17:32:52:0.327:2	0/1:1,173:31:174:0.994:2	./.	0/1:109,80:31:189:0.423:2	0/1:110,58:31:168:0.345:2	./.	./.	./.	0/1:120,72:32:192:0.375:2
chr19	9060572	rs56405542	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:92,76:29:168:0.452:2	0/1:54,65:30:119:0.546:2	0/1:33,14:28:47:0.298:2	./.	./.	0/1:111,77:30:189:0.410:2	0/1:102,63:30:165:0.382:2	./.	./.	./.	0/1:108,78:29:186:0.419:2
chr19	9060605	rs2194168	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,158:32:158:1.00:2	0/1:0,105:32:105:1.00:2	0/1:25,10:31:35:0.286:2	0/1:0,173:31:173:1.00:2	0/1:4,138:31:142:0.972:2	0/1:0,171:31:172:1.00:2	0/1:1,137:31:138:0.993:2	0/1:1,170:32:171:0.994:2	0/1:106,79:33:185:0.427:2	0/1:1,142:32:143:0.993:2	0/1:0,170:31:170:1.00:2
chr19	9060656	rs2216663	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:67,57:32:124:0.460:2	0/1:38,33:32:71:0.465:2	./.	./.	0/1:65,47:32:112:0.420:2	./.	./.	0/1:7,118:31:125:0.944:2	./.	0/1:53,45:32:98:0.459:2	0/1:66,70:32:136:0.515:2
chr19	9060755	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:33:150:0.027:2	./.	./.
chr19	9060812	rs1820099	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,103:29:104:0.990:2	0/1:0,57:29:57:1.00:2	0/1:6,4:29:10:0.400:2	0/1:0,103:29:103:1.00:2	0/1:1,90:29:91:0.989:2	0/1:0,91:29:91:1.00:2	0/1:3,96:29:99:0.970:2	0/1:1,106:29:107:0.991:2	0/1:70,56:30:126:0.444:2	0/1:0,105:30:105:1.00:2	0/1:0,106:28:106:1.00:2
chr19	9060915	rs59168469	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,54:30:119:0.454:2	./.	./.	./.	./.	./.	./.	./.
chr19	9061559	rs1423052	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:96,83:32:179:0.464:2	0/1:101,78:32:179:0.436:2	0/1:22,20:32:42:0.476:2	0/1:3,168:33:171:0.982:2	./.	0/1:97,80:33:177:0.452:2	0/1:111,62:33:173:0.358:2	./.	./.	./.	0/1:109,84:33:193:0.435:2
chr19	9062415	rs12978757	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:90,81:32:171:0.474:2	0/1:55,47:32:102:0.461:2	0/1:8,7:32:15:0.467:2	0/1:0,175:32:175:1.00:2	0/1:90,70:32:160:0.438:2	0/1:0,183:31:183:1.00:2	0/1:5,161:32:166:0.970:2	./.	0/1:108,82:33:190:0.432:2	0/1:87,92:33:179:0.514:2	0/1:92,92:32:184:0.500:2
chr19	9062544	rs2547063	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,116:32:116:1.00:2	0/1:1,53:32:54:0.981:2	0/1:11,7:32:18:0.389:2	0/1:0,108:32:108:1.00:2	0/1:0,99:30:99:1.00:2	0/1:0,107:32:107:1.00:2	0/1:0,102:31:102:1.00:2	0/1:0,135:32:135:1.00:2	0/1:66,56:32:122:0.459:2	0/1:0,109:32:110:1.00:2	0/1:0,104:32:105:1.00:2
chr19	9063515	rs376936287	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:68,10:22:78:0.128:2	./.	./.	0/1:76,21:14:97:0.216:2	0/1:49,12:16:61:0.197:2	0/1:72,23:17:95:0.242:2	0/1:62,10:16:72:0.139:2	0/1:81,24:12:105:0.229:2	./.	0/1:56,12:22:68:0.176:2	0/1:72,14:18:86:0.163:2
chr19	9063608	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:169,4:31:173:0.023:2	./.	./.	./.	./.	./.	./.
chr19	9063678	rs2547064	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:91,101:32:192:0.526:2	0/1:75,60:32:135:0.444:2	./.	./.	0/1:98,93:32:191:0.487:2	./.	./.	0/1:3,183:32:186:0.984:2	./.	0/1:89,102:33:191:0.534:2	0/1:100,91:33:191:0.476:2
chr19	9063935	rs2252675	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:69,54:31:123:0.439:2	0/1:38,37:31:75:0.493:2	./.	./.	0/1:47,55:30:102:0.539:2	./.	0/1:120,4:32:125:0.032:2	0/1:3,125:31:129:0.977:2	./.	0/1:48,43:32:91:0.473:2	0/1:66,55:31:121:0.455:2
chr19	9064308	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,4:31:152:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr19	9065203	rs62118307	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,107:32:108:0.991:2	./.	./.	./.	./.	./.	./.	./.
chr19	9065510	rs1867692	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,31:31:31:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr19	9065632	rs1867691	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:24,21:29:45:0.467:2	0/1:16,8:29:24:0.333:2	./.	./.	0/1:37,15:28:52:0.288:2	./.	./.	0/1:0,41:29:41:1.00:2	./.	0/1:19,15:30:35:0.441:2	0/1:22,22:30:44:0.500:2
chr19	9066140	rs79063508	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:72,15:16:87:0.172:2	./.	0/1:137,13:14:150:0.087:2	./.	./.	./.	./.	0/1:149,7:22:156:0.045:2	0/1:96,10:18:106:0.094:2	./.
chr19	9066259	rs17000770	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,99:33:100:0.990:2	0/1:55,31:32:86:0.360:2	0/1:40,70:33:110:0.636:2	0/1:47,21:31:68:0.309:2	./.	0/1:74,48:32:122:0.393:2	0/1:42,43:33:86:0.506:2	./.
chr19	9066874	rs12609150	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:100,91:31:191:0.476:2	0/1:108,80:31:188:0.426:2	0/1:23,21:30:44:0.477:2	./.	./.	0/1:99,96:30:195:0.492:2	0/1:105,91:31:196:0.464:2	./.	./.	./.	0/1:104,90:31:195:0.464:2
chr19	9067022	rs200755024	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,21:12:177:0.119:2	./.	./.	./.	./.	./.
chr19	9068374	rs61732552	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,34:32:69:0.493:2	./.	./.
chr19	9068530	rs7250080	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,183:31:186:0.984:2	./.	./.	./.	./.	./.	./.	./.
chr19	9068697	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,4:33:148:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr19	9068836	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,100:32:197:0.508:2
chr19	9069507	rs144202009	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:62,57:32:119:0.479:2	0/1:36,29:32:65:0.446:2	./.	./.	./.	./.	./.	0/1:63,61:31:124:0.492:2	./.	./.	./.
chr19	9069792	rs1862458	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:47,43:32:90:0.478:2	0/1:33,36:32:69:0.522:2	0/1:2,13:31:15:0.867:2	./.	./.	0/1:56,39:31:95:0.411:2	0/1:60,42:31:102:0.412:2	./.	./.	./.	0/1:62,52:31:114:0.456:2
chr19	9069823	rs1862459	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,44:33:94:0.468:2	0/1:25,24:33:49:0.490:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	9069892	rs1862460	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:66,64:33:130:0.492:2	0/1:47,31:31:78:0.397:2	0/1:8,3:32:11:0.273:2	./.	./.	0/1:60,69:31:129:0.535:2	0/1:60,28:32:88:0.318:2	./.	./.	./.	0/1:95,68:32:163:0.417:2
chr19	9070079	rs1559170	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,149:32:152:0.987:2	./.	./.	./.	./.	./.	./.	./.
chr19	9070194	rs1344572	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,169:31:169:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,177:32:177:1.00:2	0/1:0,140:31:140:1.00:2	0/1:0,158:31:158:1.00:2	0/1:1,135:31:136:0.993:2	0/1:0,166:31:166:1.00:2	0/1:0,183:32:183:1.00:2	0/1:0,162:31:162:1.00:2	0/1:0,173:31:173:1.00:2
chr19	9070225	rs1559172	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,165:33:165:1.00:2	0/1:0,98:32:98:1.00:2	0/1:14,5:33:19:0.263:2	0/1:2,169:33:171:0.988:2	0/1:0,121:32:121:1.00:2	0/1:0,148:32:148:1.00:2	0/1:2,112:32:114:0.982:2	0/1:1,141:32:142:0.993:2	0/1:88,77:33:165:0.467:2	0/1:0,166:33:166:1.00:2	0/1:0,168:33:169:1.00:2
chr19	9070402	rs12150888	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,80:31:155:0.516:2	0/1:86,92:31:178:0.517:2	0/1:63,77:32:140:0.550:2	./.	0/1:98,96:32:194:0.495:2	0/1:78,87:31:165:0.527:2	./.
chr19	9070453	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,83:32:157:0.529:2	0/1:35,31:33:66:0.470:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	9070837	rs2547067	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,146:31:146:1.00:2	0/1:0,93:31:93:1.00:2	0/1:7,15:29:22:0.682:2	0/1:0,171:31:171:1.00:2	0/1:0,123:31:123:1.00:2	0/1:0,149:30:149:1.00:2	0/1:4,117:31:121:0.967:2	0/1:1,179:31:180:0.994:2	0/1:90,71:32:161:0.441:2	0/1:0,150:31:151:1.00:2	0/1:0,159:31:159:1.00:2
chr19	9071562	rs116866749	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,77:32:186:0.414:2	./.	./.
chr19	9071763	rs10422567	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,77:32:77:1.00:2	0/1:0,35:31:35:1.00:2	./.	0/1:2,80:31:82:0.976:2	0/1:0,50:31:50:1.00:2	0/1:0,62:31:62:1.00:2	0/1:1,42:31:43:0.977:2	0/1:0,65:32:65:1.00:2	0/1:35,42:32:77:0.545:2	0/1:0,54:32:54:1.00:2	0/1:1,105:32:106:0.991:2
chr19	9071834	rs17000803	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:31,37:31:69:0.544:2	0/1:18,19:28:37:0.514:2	0/1:9,5:31:14:0.357:2	./.	./.	0/1:35,18:29:53:0.340:2	0/1:19,16:29:35:0.457:2	./.	./.	./.	0/1:44,35:29:79:0.443:2
chr19	9072221	rs66498329	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:39,38:30:77:0.494:2	0/1:25,26:31:51:0.510:2	0/1:9,10:30:19:0.526:2	./.	./.	0/1:50,38:31:88:0.432:2	0/1:41,45:32:86:0.523:2	./.	./.	./.	0/1:53,51:31:104:0.490:2
chr19	9072296	rs7254970	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,17:30:39:0.436:2	0/1:33,39:31:72:0.542:2	0/1:25,20:32:45:0.444:2	./.	0/1:26,25:31:51:0.490:2	0/1:16,25:32:41:0.610:2	./.
chr19	9072313	rs2121133	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:19,23:33:42:0.548:2	0/1:16,8:33:24:0.333:2	./.	./.	0/1:23,16:32:39:0.410:2	./.	./.	0/1:3,62:31:65:0.954:2	./.	0/1:29,17:33:46:0.370:2	0/1:34,33:33:67:0.493:2
chr19	9072742	rs2591590	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:100,81:30:181:0.448:2	0/1:92,99:30:191:0.518:2	./.	./.	0/1:105,86:29:191:0.450:2	./.	./.	0/1:2,181:30:183:0.989:2	./.	0/1:111,79:30:191:0.416:2	0/1:113,75:30:188:0.399:2
chr19	9072875	rs73009098	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:109,72:31:181:0.398:2	0/1:99,84:31:183:0.459:2	./.	./.	./.	./.	0/1:112,78:30:190:0.411:2	./.	./.	./.	./.
chr19	9072975	rs17000816	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:108,80:32:188:0.426:2	0/1:88,89:32:177:0.503:2	./.	./.	./.	./.	0/1:122,74:32:196:0.378:2	./.	./.	./.	./.
chr19	9074073	rs72486387	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:90,83:32:173:0.480:2	0/1:71,55:33:126:0.437:2	./.	./.	./.	./.	0/1:103,87:32:190:0.458:2	./.	./.	./.	./.
chr19	9074265	rs10406209	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:114,82:31:196:0.418:2	0/1:113,81:31:194:0.418:2	0/1:92,94:31:186:0.505:2	./.	0/1:105,86:32:193:0.450:2	0/1:117,74:32:191:0.387:2	./.
chr19	9074950	rs2591591	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:83,75:32:159:0.475:2	0/1:40,69:32:109:0.633:2	./.	./.	0/1:97,73:31:170:0.429:2	./.	./.	0/1:3,177:31:180:0.983:2	./.	0/1:86,72:31:158:0.456:2	0/1:107,83:32:190:0.437:2
chr19	9075217	rs2547068	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:52,32:32:84:0.381:2	0/1:31,24:32:56:0.436:2	./.	./.	0/1:62,47:29:109:0.431:2	./.	./.	0/1:3,107:31:110:0.973:2	./.	0/1:38,34:32:73:0.472:2	0/1:52,44:32:97:0.458:2
chr19	9075346	rs2591592	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:120,77:32:197:0.391:2	0/1:66,51:32:117:0.436:2	./.	./.	0/1:7,173:30:181:0.961:2	0/1:115,83:30:198:0.419:2	0/1:98,99:30:197:0.503:2	0/1:4,191:31:195:0.979:2	0/1:104,90:32:194:0.464:2	0/1:0,171:31:171:1.00:2	0/1:116,80:30:196:0.408:2
chr19	9075565	rs17000836	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,188:32:188:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr19	9075584	rs2547069	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:103,86:33:189:0.455:2	0/1:77,71:32:148:0.480:2	./.	./.	0/1:106,82:32:188:0.436:2	./.	./.	0/1:1,164:33:165:0.994:2	./.	0/1:100,83:32:183:0.454:2	0/1:96,73:33:169:0.432:2
chr19	9075635	rs2547070	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:68,59:32:127:0.465:2	0/1:53,43:32:96:0.448:2	./.	./.	0/1:82,48:31:130:0.369:2	./.	./.	0/1:1,139:31:140:0.993:2	./.	0/1:82,51:32:134:0.383:2	0/1:83,80:32:164:0.491:2
chr19	9075737	rs2547071	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,60:32:109:0.550:2	0/1:47,39:32:86:0.453:2	0/1:4,6:32:10:0.600:2	0/1:0,118:32:118:1.00:2	0/1:51,49:31:100:0.490:2	0/1:46,57:31:103:0.553:2	0/1:97,5:32:102:0.049:2	0/1:2,99:32:101:0.980:2	./.	0/1:55,34:32:89:0.382:2	0/1:2,136:32:138:0.986:2
chr19	9075969	rs2591593	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:106,65:33:171:0.380:2	0/1:51,40:32:91:0.440:2	./.	./.	0/1:105,86:32:191:0.450:2	./.	./.	0/1:6,184:32:190:0.968:2	./.	0/1:119,78:32:197:0.396:2	0/1:122,73:32:195:0.374:2
chr19	9076083	rs2547072	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:63,62:31:125:0.496:2	0/1:42,32:31:74:0.432:2	./.	./.	0/1:71,62:29:133:0.466:2	./.	./.	0/1:7,152:30:159:0.956:2	./.	0/1:71,50:31:121:0.413:2	0/1:88,62:30:150:0.413:2
chr19	9076163	rs2547073	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:61,60:32:121:0.496:2	0/1:32,28:32:60:0.467:2	./.	./.	0/1:95,59:32:154:0.383:2	./.	./.	0/1:5,111:32:116:0.957:2	./.	0/1:51,45:31:96:0.469:2	0/1:72,53:32:125:0.424:2
chr19	9076278	rs953551	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:86,55:32:141:0.390:2	0/1:59,32:32:91:0.352:2	./.	./.	0/1:73,71:31:144:0.493:2	./.	./.	0/1:2,157:32:159:0.987:2	./.	0/1:65,54:32:119:0.454:2	0/1:101,83:31:185:0.451:2
chr19	9076728	rs2591594	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:105,72:30:178:0.407:2	0/1:104,78:31:182:0.429:2	./.	./.	0/1:99,92:31:191:0.482:2	./.	0/1:187,4:32:191:0.021:2	0/1:2,192:32:195:0.990:2	./.	0/1:97,94:31:191:0.492:2	0/1:106,83:31:191:0.439:2
chr19	9076858	rs2547074	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:98,78:33:176:0.443:2	0/1:100,77:32:177:0.435:2	./.	./.	0/1:103,87:32:191:0.458:2	./.	./.	0/1:2,188:32:190:0.989:2	./.	0/1:95,87:33:182:0.478:2	0/1:95,72:32:168:0.431:2
chr19	9076929	rs2547075	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:103,73:32:177:0.415:2	0/1:70,70:31:140:0.500:2	./.	./.	0/1:117,73:32:190:0.384:2	./.	./.	0/1:3,164:32:167:0.982:2	./.	0/1:96,77:32:173:0.445:2	0/1:98,78:31:176:0.443:2
chr19	9076950	rs2547076	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:103,69:32:172:0.401:2	0/1:67,64:31:131:0.489:2	./.	./.	0/1:118,73:31:191:0.382:2	./.	./.	0/1:3,174:31:177:0.983:2	./.	0/1:84,72:31:156:0.462:2	0/1:105,76:32:181:0.420:2
chr19	9076991	rs2591595	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:96,70:31:166:0.422:2	0/1:48,49:32:97:0.505:2	./.	./.	0/1:108,74:31:182:0.407:2	./.	./.	0/1:2,165:32:168:0.988:2	./.	0/1:89,60:33:149:0.403:2	0/1:89,89:32:178:0.500:2
chr19	9077060	rs2591596	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:49,46:30:95:0.484:2	0/1:20,32:31:52:0.615:2	./.	./.	0/1:71,39:29:110:0.355:2	./.	./.	0/1:1,91:29:92:0.989:2	./.	0/1:47,34:29:81:0.420:2	0/1:54,54:29:108:0.500:2
chr19	9077196	rs7254941	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,90:31:193:0.466:2	./.	./.	./.	./.	./.	./.	./.
chr19	9077264	rs1862461	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:93,80:32:173:0.462:2	0/1:67,78:32:145:0.538:2	./.	./.	0/1:100,74:32:174:0.425:2	./.	./.	0/1:2,173:32:175:0.989:2	./.	0/1:81,90:32:171:0.526:2	0/1:82,86:32:168:0.512:2
chr19	9077436	rs1862462	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:85,59:31:144:0.410:2	0/1:44,44:31:88:0.500:2	./.	./.	0/1:61,55:30:116:0.474:2	./.	./.	0/1:2,134:30:136:0.985:2	./.	0/1:68,65:31:133:0.489:2	0/1:101,89:31:191:0.468:2
chr19	9077581	rs73011014	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:85,97:31:183:0.533:2	0/1:99,96:30:195:0.492:2	./.	./.	./.	./.	0/1:112,85:31:197:0.431:2	./.	./.	./.	./.
chr19	9077803	rs2591597	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:82,52:29:134:0.388:2	0/1:38,38:28:76:0.500:2	./.	./.	0/1:67,42:30:109:0.385:2	./.	./.	0/1:3,116:28:119:0.975:2	./.	0/1:79,47:29:126:0.373:2	0/1:106,74:29:181:0.411:2
chr19	9080462	rs2547065	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:31:49:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,52:32:52:1.00:2	./.	0/1:42,50:33:92:0.543:2	0/1:3,59:32:62:0.952:2	0/1:0,64:31:64:1.00:2	./.	0/1:35,34:32:69:0.493:2	0/1:0,61:32:61:1.00:2
chr19	9082514	rs17000871	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,160:31:162:0.988:2	./.	./.	./.	./.	./.	./.	./.
chr19	9083124	rs12608495	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:58,54:32:112:0.482:2	0/1:32,38:30:70:0.543:2	./.	./.	./.	./.	0/1:66,54:31:120:0.450:2	0/1:4,113:31:117:0.966:2	./.	0/1:53,62:31:115:0.539:2	0/1:95,77:31:172:0.448:2
chr19	9083143	rs7245949	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,79:30:87:0.908:2	0/1:76,56:30:132:0.424:2	./.	./.	0/1:98,50:31:148:0.338:2	0/1:62,47:30:109:0.431:2	./.
chr19	9083174	rs7245960	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,81:32:85:0.953:2	0/1:57,60:31:117:0.513:2	./.	./.	0/1:91,55:32:146:0.377:2	0/1:72,45:33:117:0.385:2	./.
chr19	9083427	rs1609453	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:43,43:32:86:0.500:2	0/1:31,22:32:53:0.415:2	0/1:2,5:32:7:0.714:2	./.	./.	0/1:54,29:32:83:0.349:2	0/1:49,43:33:92:0.467:2	./.	./.	./.	0/1:65,54:31:120:0.454:2
chr19	9083457	rs17000886	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:37,37:30:74:0.500:2	0/1:29,17:31:46:0.370:2	0/1:1,5:31:6:0.833:2	./.	./.	0/1:45,18:30:63:0.286:2	0/1:38,35:30:73:0.479:2	./.	./.	./.	0/1:48,38:29:86:0.442:2
chr19	9083791	rs60106152	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,9:31:10:0.900:2	./.	./.	./.	./.	./.	0/1:49,56:32:105:0.533:2	./.	./.
chr19	9084183	rs1609460	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:74,90:32:164:0.549:2	0/1:51,54:32:105:0.514:2	0/1:16,8:33:24:0.333:2	./.	0/1:2,173:31:175:0.989:2	0/1:1,183:32:184:0.995:2	0/1:104,88:32:192:0.458:2	./.	0/1:109,82:33:191:0.429:2	0/1:68,71:32:139:0.511:2	0/1:95,93:32:188:0.495:2
chr19	9084216	rs1609459	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,153:27:156:0.987:2	0/1:93,68:28:161:0.422:2	./.	./.	0/1:95,79:29:175:0.454:2	0/1:44,56:28:100:0.560:2	./.
chr19	9084299	rs1609458	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:48,38:31:86:0.442:2	0/1:31,26:32:57:0.456:2	0/1:2,8:33:10:0.800:2	./.	0/1:4,77:31:81:0.951:2	0/1:1,101:31:102:0.990:2	0/1:74,37:31:111:0.333:2	./.	0/1:61,52:32:113:0.460:2	0/1:46,30:31:76:0.395:2	0/1:60,45:31:105:0.429:2
chr19	9085004	rs11085805	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:55,36:33:91:0.396:2	0/1:14,24:33:38:0.632:2	0/1:3,11:33:14:0.786:2	./.	./.	0/1:60,41:32:101:0.406:2	0/1:58,24:33:82:0.293:2	./.	./.	./.	0/1:54,45:33:99:0.455:2
chr19	9085643	rs1574479	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:19,24:32:43:0.558:2	0/1:11,12:32:23:0.522:2	0/1:0,2:32:2:1.00:2	./.	./.	0/1:18,20:32:38:0.526:2	0/1:24,19:32:43:0.442:2	./.	./.	./.	0/1:22,15:31:37:0.405:2
chr19	9085958	rs1108380	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,7:32:18:0.389:2	./.	./.	./.	./.	./.	0/1:101,83:33:184:0.451:2	./.	./.
chr19	9086123	rs10402812	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,72:32:77:0.935:2	0/1:44,47:32:91:0.516:2	./.	./.	0/1:40,57:34:97:0.588:2	0/1:49,34:33:83:0.410:2	./.
chr19	9086145	rs45611441	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:33:10:0.400:2	./.	./.	./.	./.	./.	0/1:52,30:33:82:0.366:2	./.	./.
chr19	9086184	rs74999347	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,29:31:52:0.558:2	./.
chr19	9086318	rs4520945	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:65,52:32:117:0.444:2	0/1:27,19:32:46:0.413:2	0/1:5,4:29:9:0.444:2	./.	./.	0/1:62,54:31:116:0.466:2	0/1:46,35:32:81:0.432:2	./.	./.	./.	0/1:78,46:32:124:0.371:2
chr19	9086819	rs1823056	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:71,62:32:133:0.466:2	0/1:36,37:32:73:0.507:2	0/1:4,5:30:9:0.556:2	./.	./.	0/1:67,63:31:130:0.485:2	0/1:76,61:31:137:0.445:2	./.	./.	./.	0/1:75,47:31:122:0.385:2
chr19	9087615	rs1596798	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,181:32:182:0.995:2	0/1:0,183:32:183:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,189:31:189:1.00:2	0/1:0,193:31:193:1.00:2	0/1:0,187:31:187:1.00:2	0/1:0,187:32:187:1.00:2	0/1:0,184:31:184:1.00:2	0/1:0,190:32:190:1.00:2	0/1:0,185:32:185:1.00:2	0/1:0,183:31:183:1.00:2
chr19	9087758	rs12611293	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:107,86:32:193:0.446:2	0/1:91,91:32:182:0.500:2	0/1:24,27:31:51:0.529:2	./.	./.	0/1:104,91:30:195:0.467:2	0/1:114,82:31:196:0.418:2	./.	./.	./.	0/1:113,76:31:189:0.402:2
chr19	9088017	rs1596797	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:68,75:32:143:0.524:2	0/1:43,38:32:81:0.469:2	0/1:0,17:32:17:1.00:2	0/1:0,157:32:157:1.00:2	0/1:0,154:32:154:1.00:2	0/1:0,141:32:141:1.00:2	0/1:85,65:32:150:0.433:2	0/1:164,7:32:171:0.041:2	0/1:0,180:33:180:1.00:2	0/1:62,66:32:128:0.516:2	0/1:84,73:32:157:0.465:2
chr19	9088330	rs17000947	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:94,63:31:157:0.401:2	0/1:40,38:30:78:0.487:2	0/1:11,15:31:26:0.577:2	./.	./.	0/1:99,74:31:173:0.428:2	0/1:83,79:31:162:0.488:2	./.	./.	./.	0/1:99,53:32:152:0.349:2
chr19	9088722	rs17000948	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,175:31:181:0.978:2	./.	./.	./.	./.	./.	./.	./.
chr19	9088772	rs17000950	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:77,79:30:156:0.506:2	0/1:33,32:28:65:0.492:2	0/1:13,12:29:25:0.480:2	./.	./.	0/1:77,67:28:144:0.465:2	0/1:87,42:29:129:0.326:2	./.	./.	./.	0/1:77,91:29:168:0.542:2
chr19	9089952	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.	./.
chr19	9090182	rs17000957	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,11:32:32:0.344:2	./.	./.	./.	./.	./.	0/1:86,100:34:186:0.538:2	./.	./.
chr19	9090531	rs12976721	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,143:32:143:1.00:2	0/1:104,89:32:193:0.461:2	./.	./.	0/1:93,83:33:176:0.472:2	0/1:87,76:33:163:0.466:2	./.
chr19	9090784	rs73495785	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,13:31:18:0.722:2	./.	./.	./.	./.	./.	0/1:103,84:32:187:0.449:2	./.	./.
chr19	9204307	rs4804097	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,84:30:84:1.00:2	0/1:0,57:29:57:1.00:2	0/1:0,11:30:11:1.00:2	0/1:63,53:29:116:0.457:2	0/1:83,48:30:131:0.366:2	0/1:0,96:30:96:1.00:2	0/1:2,127:29:129:0.984:2	0/1:2,142:29:144:0.986:2	0/1:50,48:31:98:0.490:2	./.	0/1:0,85:30:85:1.00:2
chr19	9204358	rs7259007	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,47:31:96:0.490:2	./.	./.	./.	./.	./.	./.	./.
chr19	9204765	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,15:31:40:0.375:2	0/1:11,4:32:15:0.267:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	9213026	rs4804400	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:49,51:33:100:0.510:2	0/1:36,17:31:53:0.321:2	0/1:0,15:32:15:1.00:2	./.	0/1:64,33:32:97:0.340:2	0/1:62,67:32:129:0.519:2	0/1:1,86:33:87:0.989:2	0/1:2,132:33:134:0.985:2	0/1:61,46:34:107:0.430:2	./.	0/1:7,97:33:104:0.933:2
chr19	9213079	rs4804401	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:41,45:32:86:0.523:2	0/1:36,14:31:50:0.280:2	0/1:0,14:30:14:1.00:2	./.	0/1:53,21:31:74:0.284:2	0/1:38,40:31:78:0.513:2	0/1:0,59:31:59:1.00:2	0/1:0,99:32:99:1.00:2	0/1:55,35:33:90:0.389:2	./.	0/1:5,81:32:86:0.942:2
chr19	9213132	rs12610094	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,45:30:79:0.570:2	0/1:26,14:31:40:0.350:2	0/1:0,9:29:9:1.00:2	0/1:68,28:30:96:0.292:2	0/1:57,21:28:78:0.269:2	0/1:38,42:29:80:0.525:2	0/1:0,59:30:59:1.00:2	0/1:0,107:30:107:1.00:2	0/1:49,41:30:90:0.456:2	0/1:42,24:29:66:0.364:2	0/1:1,88:29:89:0.989:2
chr19	9213651	rs62621389	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,42:33:114:0.368:2	./.
chr19	9225685	rs2195951	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,11:32:35:0.314:2	./.	./.	./.	./.	./.	./.
chr19	9225940	rs7246969	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,20:31:55:0.364:2	./.	./.	./.	./.	./.	0/1:23,28:32:51:0.549:2	./.
chr19	9225973	rs7246980	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,26:31:68:0.382:2	./.	./.	./.	./.	./.	0/1:32,32:30:65:0.500:2	./.
chr19	9226017	rs2217657	C	G,A	.	PASS	AC=4,1;AF=0.267,0.067;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9	GT:BQ:DP:FA:SS	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	./.	0/2:32:97:0.454:2	0/1:29:114:0.474:2	./.	./.	0/1:30:132:0.530:2	0/1:29:112:0.536:2	0/1:27:81:0.469:2	./.
chr19	9226192	rs6511874	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,75:30:155:0.484:2	./.	./.	./.	./.	./.	./.
chr19	9226265	rs75711758	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,44:28:91:0.484:2	./.	./.	./.	./.	./.	./.	./.
chr19	9236886	rs10424352	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:28:7:0.429:2	./.	0/1:34,19:30:53:0.358:2	./.	./.	./.	./.	0/1:0,30:31:30:1.00:2	0/1:1,64:30:65:0.985:2
chr19	9236917	rs61730387	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.
chr19	9237435	rs10407484	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,8:33:22:0.364:2	./.	0/1:74,70:31:144:0.486:2	./.	./.	./.	./.	0/1:2,104:32:106:0.981:2	0/1:0,115:32:115:1.00:2
chr19	9237542	rs10414255	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,11:30:22:0.500:2	./.	0/1:81,60:29:141:0.426:2	./.	./.	./.	./.	0/1:2,123:28:125:0.984:2	0/1:0,120:28:121:1.00:2
chr19	9266679	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:156,4:34:160:0.025:2	./.	./.	./.	./.	./.	./.
chr19	9267292	rs35822846	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,9:31:23:0.391:2	0/1:25,16:33:41:0.390:2	./.	./.	./.
chr19	9267319	rs3752199	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,27:32:46:0.587:2	./.	0/1:18,24:33:42:0.571:2
chr19	9270939	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:33:70:0.057:2
chr19	9271969	rs9305035	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,37:32:95:0.389:2	0/1:31,31:30:62:0.500:2	./.	./.	./.
chr19	9296664	rs56246934	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,24:29:53:0.453:2	0/1:20,22:29:42:0.524:2	0/1:6,5:31:11:0.455:2	0/1:43,24:29:67:0.358:2	0/1:37,36:29:73:0.493:2	0/1:37,33:28:70:0.471:2	./.	./.	0/1:41,19:30:60:0.317:2	0/1:2,56:30:58:0.966:2	0/1:21,27:28:48:0.563:2
chr19	9296963	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:32:106:0.038:2	./.	./.	./.
chr19	9297606	rs10423277	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:3,3:33:6:0.500:2	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	0/1:1,2:34:3:0.667:2	./.	0/1:5,4:33:9:0.444:2
chr19	9297874	rs7246654	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,25:33:52:0.481:2	0/1:25,6:32:31:0.194:2	0/1:2,3:31:5:0.600:2	0/1:0,67:33:67:1.00:2	0/1:26,40:32:66:0.606:2	./.	./.	0/1:42,23:32:65:0.354:2	0/1:37,42:34:79:0.532:2	./.	0/1:31,25:33:56:0.446:2
chr19	9298174	rs55913502	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,4:30:10:0.400:2	0/1:5,4:32:9:0.444:2	./.	0/1:8,3:31:11:0.273:2
chr19	9298364	rs6511918	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,24:31:59:0.407:2	0/1:17,20:32:37:0.541:2	0/1:4,6:31:10:0.600:2	0/1:0,60:32:60:1.00:2	0/1:36,22:31:58:0.379:2	./.	./.	0/1:45,25:32:70:0.357:2	0/1:57,51:33:108:0.472:2	./.	0/1:44,30:32:74:0.405:2
chr19	9298747	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,13:26:31:0.419:2	./.	./.	./.	./.
chr19	9324863	rs8109935	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,66:31:66:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr19	9324909	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:33:95:0.042:2	./.	./.
chr19	9325116	rs5020278	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:31:11:0.455:2	./.	./.	./.	./.	0/1:64,38:31:102:0.373:2	0/1:44,44:32:89:0.500:2	./.	0/1:56,44:31:100:0.440:2
chr19	9325171	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:34:100:0.040:2	./.
chr19	9325252	rs61729907	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,10:32:15:0.667:2	./.	./.	./.	./.	0/1:67,85:32:152:0.559:2	0/1:59,83:33:142:0.585:2	./.	0/1:75,76:32:151:0.503:2
chr19	9361909	rs75749687	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,13:28:25:0.542:2
chr19	9362297	rs12980833	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,46:32:96:0.479:2	./.	./.	./.	./.	./.	./.	./.
chr19	9362343	rs2240927	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:58,53:33:111:0.477:2	0/1:25,26:33:51:0.510:2	./.	0/1:1,68:32:69:0.986:2	./.	./.	0/1:49,31:32:80:0.388:2	./.	./.	./.	0/1:49,46:32:95:0.484:2
chr19	9362443	rs2240928	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:23,19:32:42:0.452:2	0/1:12,5:30:17:0.294:2	./.	0/1:0,39:32:39:1.00:2	./.	./.	0/1:13,14:29:27:0.519:2	./.	./.	./.	0/1:21,11:33:32:0.344:2
chr19	9408658	rs73920733	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,18:32:53:0.340:2	./.	./.	./.	./.	./.	./.	./.
chr19	9449888	rs77267061	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:88,82:32:170:0.482:2	0/1:67,31:31:98:0.316:2	./.	0/1:103,64:32:168:0.383:2	./.	./.	./.	./.	./.	./.	./.
chr19	9451835	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:32:52:0.077:2	./.
chr19	9452868	rs16979666	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,7:31:17:0.412:2	./.	./.	./.	./.	0/1:55,57:32:112:0.509:2	./.	./.	./.
chr19	9452879	rs16979670	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,6:32:17:0.353:2	./.	./.	./.	./.	0/1:52,51:31:103:0.495:2	./.	./.	./.
chr19	9490760	rs2230750	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,8:32:19:0.421:2	./.	./.	./.	./.	0/1:34,32:32:66:0.485:2	./.	./.	./.
chr19	9490814	rs2217652	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,26:32:61:0.426:2	0/1:13,16:32:29:0.552:2	0/1:0,12:30:12:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,42:31:43:1.00:2	0/1:0,34:32:34:1.00:2	0/1:2,43:31:45:0.956:2	0/1:40,34:33:74:0.459:2	0/1:29,21:32:50:0.420:2	0/1:0,39:32:39:1.00:2
chr19	9492141	rs3826783	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:40,42:32:82:0.512:2	0/1:23,29:32:52:0.558:2	./.	0/1:0,127:31:127:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,96:31:96:1.00:2	0/1:3,86:32:89:0.966:2	0/1:60,51:31:111:0.459:2	0/1:49,32:32:81:0.395:2	0/1:38,39:32:77:0.506:2	0/1:0,103:32:103:1.00:2
chr19	9492370	rs2230752	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,26:32:59:0.441:2	0/1:16,13:32:29:0.448:2	0/1:1,2:32:3:0.667:2	0/1:0,61:32:61:1.00:2	0/1:3,46:31:49:0.939:2	0/1:1,42:31:43:0.977:2	0/1:0,40:31:40:1.00:2	0/1:33,43:31:76:0.566:2	0/1:38,29:33:67:0.433:2	0/1:22,22:32:44:0.500:2	0/1:0,79:32:79:1.00:2
chr19	9524185	rs2241356	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,49:33:107:0.458:2	0/1:29,45:32:74:0.608:2	0/1:0,11:33:11:1.00:2	0/1:0,139:33:139:1.00:2	0/1:1,116:32:117:0.991:2	0/1:2,115:32:117:0.983:2	0/1:5,122:33:128:0.961:2	0/1:0,137:32:137:1.00:2	0/1:80,78:34:158:0.494:2	0/1:64,76:33:140:0.543:2	0/1:1,155:33:156:0.994:2
chr19	9524272	rs75717316	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:32:8:0.750:2	./.	./.	./.	./.	0/1:32,49:32:81:0.605:2	./.	./.	./.
chr19	9524715	rs78504948	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	./.	./.	./.	0/1:23,42:33:65:0.646:2	./.	./.	./.
chr19	9525163	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:34:139:0.029:2	./.
chr19	9529205	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:31:151:0.026:2	./.	./.	./.
chr19	9584900	rs200768546	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:33:108:0.037:2
chr19	9646862	rs2042199	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,29:28:57:0.509:2	0/1:25,9:29:34:0.265:2	./.	0/1:46,24:29:70:0.343:2	0/1:24,18:30:43:0.429:2	./.	./.	0/1:49,28:29:77:0.364:2	./.	./.	./.
chr19	9646898	rs2042200	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,36:31:66:0.545:2	0/1:27,10:31:37:0.270:2	./.	0/1:52,36:31:88:0.409:2	0/1:32,28:31:60:0.467:2	./.	./.	0/1:53,39:31:92:0.424:2	./.	./.	./.
chr19	9678748	rs12462832	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,11:33:29:0.379:2	0/1:13,6:33:19:0.316:2	./.	0/1:8,16:31:24:0.667:2	0/1:11,8:33:19:0.421:2	./.	./.	0/1:17,12:32:29:0.414:2	./.	./.	./.
chr19	9721401	rs28445940	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,64:31:65:0.985:2	0/1:1,56:32:57:0.982:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,56:32:103:0.544:2
chr19	9721525	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:33:167:0.024:2
chr19	9724782	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,3:32:31:0.097:2	./.	./.	./.	./.	./.	./.
chr19	9728845	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:34:73:0.055:2	./.	./.	./.	./.	./.
chr19	9763789	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:31:138:0.029:2	./.	./.	./.	./.	./.
chr19	9868204	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:32:185:0.022:2	./.	./.	./.	./.
chr19	9868257	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:32:175:0.023:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	9868278	rs10420364	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,159:32:161:0.994:2	0/1:1,74:33:75:0.987:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,81:33:156:0.519:2
chr19	9868404	rs10414485	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,110:31:111:0.991:2	0/1:1,62:31:63:0.984:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,77:31:161:0.478:2
chr19	9869348	rs192422051	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,40:32:78:0.513:2	./.	./.	./.
chr19	9922223	rs17849496	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,42:31:84:0.500:2	0/1:21,15:31:36:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,36:32:61:0.590:2
chr19	9964946	rs11556088	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,128:31:130:0.985:2	./.	./.	./.	0/1:66,62:31:128:0.484:2	./.	0/1:0,103:31:103:1.00:2	./.
chr19	9968139	rs11556087	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,14:31:36:0.389:2	./.	0/1:25,7:32:32:0.219:2	0/1:14,11:32:25:0.440:2	./.	./.
chr19	9968434	rs2303100	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:13,11:33:24:0.458:2	0/1:9,10:32:19:0.526:2	0/1:2,6:33:8:0.750:2	./.	./.	0/1:19,28:31:47:0.596:2	./.	0/1:38,23:31:61:0.377:2	0/1:32,38:33:70:0.543:2	./.	0/1:15,10:33:25:0.400:2
chr19	10071347	rs2277969	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,14:30:34:0.412:2	./.	./.	./.
chr19	10076990	rs3745581	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,16:31:30:0.533:2	0/1:14,4:32:18:0.222:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	10077419	rs3745584	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	0/1:0,4:32:4:1.00:2	./.	./.	./.	./.	./.	./.
chr19	10078589	rs3815748	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,14:34:29:0.483:2	0/1:5,9:33:14:0.643:2	./.	./.	./.	./.	./.	./.	0/1:0,30:33:30:1.00:2	./.	./.
chr19	10079093	rs3815746	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,27:31:53:0.509:2	0/1:1,51:31:52:0.981:2	./.	./.	0/1:24,28:31:52:0.538:2	./.	./.	0/1:19,21:32:40:0.525:2
chr19	10081276	rs1895371	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,13:29:13:1.00:2	0/1:0,5:28:5:1.00:2	./.	./.	0/1:0,16:29:16:1.00:2	./.	./.	0/1:0,20:30:20:1.00:2	./.	./.	0/1:0,17:30:17:1.00:2
chr19	10081322	rs61729461	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:30:9:0.333:2
chr19	10081362	rs73003451	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,5:33:15:0.333:2	0/1:3,4:32:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	10084292	rs2287813	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,11:32:19:0.579:2	0/1:6,7:32:13:0.538:2	./.	0/1:15,20:33:35:0.571:2	0/1:0,24:33:24:1.00:2	./.	./.	0/1:0,30:31:30:1.00:2	0/1:15,8:33:23:0.348:2	./.	0/1:1,30:33:31:0.968:2
chr19	10084422	rs2287812	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,9:32:33:0.273:2	0/1:1,11:32:12:0.917:2	./.	./.	0/1:8,10:31:18:0.556:2	0/1:8,15:33:23:0.652:2	./.	0/1:13,14:33:27:0.519:2
chr19	10084460	rs62638750	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,10:33:29:0.345:2	./.	./.	./.	./.	./.	./.	./.
chr19	10085054	rs3815745	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,8:29:9:0.889:2	0/1:0,9:30:9:1.00:2	./.	./.	0/1:4,6:27:10:0.600:2	0/1:8,5:30:13:0.385:2	./.	0/1:7,7:29:15:0.500:2
chr19	10087886	rs114827216	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:28:3:1.00:2	./.	./.	./.	./.	0/1:27,26:30:53:0.491:2	./.	./.	0/1:17,17:29:34:0.500:2
chr19	10088271	rs2161468	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,29:29:55:0.527:2	0/1:0,44:29:44:1.00:2	./.	./.	0/1:0,50:29:50:1.00:2	0/1:12,13:28:25:0.520:2	./.	0/1:0,43:28:43:1.00:2
chr19	10089262	rs12610207	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,38:33:87:0.437:2	0/1:29,34:32:63:0.540:2	0/1:5,3:34:8:0.375:2	0/1:32,58:33:90:0.644:2	0/1:1,58:32:59:0.983:2	./.	./.	0/1:0,93:32:93:1.00:2	0/1:0,120:33:120:1.00:2	./.	0/1:0,132:32:132:1.00:2
chr19	10090649	rs11879687	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:13,17:32:30:0.567:2	0/1:10,12:31:22:0.545:2	./.	0/1:16,13:32:29:0.448:2	./.	0/1:21,16:29:37:0.432:2	0/1:0,39:31:39:1.00:2	./.	./.	0/1:0,33:31:33:1.00:2	./.
chr19	10097443	rs111955359	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,6:18:15:0.400:2	0/1:21,6:18:27:0.222:2	./.	0/1:16,8:20:24:0.333:2
chr19	10100061	rs2287804	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,22:32:51:0.431:2	0/1:16,12:31:28:0.429:2	0/1:2,4:31:6:0.667:2	0/1:31,41:30:72:0.569:2	0/1:1,38:29:39:0.974:2	./.	./.	0/1:0,54:30:54:1.00:2	0/1:0,51:31:51:1.00:2	./.	0/1:0,50:31:50:1.00:2
chr19	10102676	rs7252953	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,59:29:99:0.602:2	0/1:39,19:28:58:0.328:2	0/1:4,15:30:19:0.789:2	0/1:82,57:29:139:0.410:2	0/1:2,181:28:183:0.989:2	./.	./.	0/1:3,188:28:191:0.984:2	0/1:0,105:29:105:1.00:2	./.	0/1:0,85:29:85:1.00:2
chr19	10103755	rs73005188	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,25:31:49:0.510:2	0/1:17,14:32:31:0.452:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	10104272	rs2277963	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,9:31:22:0.409:2	0/1:1,20:29:21:0.952:2	./.	./.	0/1:13,8:31:21:0.381:2	0/1:5,15:31:20:0.750:2	./.	./.
chr19	10104322	rs62638740	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,16:29:38:0.421:2	./.	./.
chr19	10106871	rs10415783	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,28:29:59:0.475:2	./.	./.	0/1:25,20:29:46:0.444:2
chr19	10106936	rs1559186	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,8:32:19:0.421:2	0/1:3,4:33:7:0.571:2	./.	0/1:7,4:31:11:0.364:2	0/1:0,10:33:10:1.00:2	./.	./.	0/1:0,24:31:24:1.00:2	0/1:0,14:33:14:1.00:2	./.	0/1:13,8:31:21:0.381:2
chr19	10108635	rs66508928	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:32:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	10108714	rs7254800	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,33:31:69:0.478:2	0/1:25,25:31:50:0.500:2	./.	0/1:0,99:30:99:1.00:2	0/1:0,70:31:70:1.00:2	./.	./.	0/1:1,119:31:120:0.992:2	0/1:1,86:31:87:0.989:2	0/1:0,62:32:62:1.00:2	0/1:53,32:31:85:0.376:2
chr19	10108850	rs3745594	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:11,21:32:32:0.656:2	0/1:7,14:32:21:0.667:2	./.	./.	./.	./.	./.	0/1:22,30:32:52:0.577:2	0/1:18,16:33:34:0.471:2	./.	0/1:21,22:31:43:0.512:2
chr19	10112346	rs2287803	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:32:66:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,54:33:54:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,45:31:45:1.00:2
chr19	10114252	rs61742765	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:33:10:0.500:2	./.	./.	0/1:4,125:32:129:0.969:2	0/1:79,56:32:135:0.415:2	./.	./.	0/1:0,121:33:121:1.00:2	0/1:94,46:31:140:0.329:2
chr19	10114740	rs62104337	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,7:29:16:0.438:2	./.	./.	0/1:1,98:29:99:0.990:2	0/1:67,52:29:119:0.437:2	./.	./.	0/1:0,71:30:72:1.00:2	0/1:49,45:30:94:0.479:2
chr19	10114759	rs76321360	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,34:30:81:0.420:2	./.	./.	./.	./.	0/1:69,45:31:115:0.395:2	./.	./.
chr19	10116375	rs2303099	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:30,23:31:53:0.434:2	0/1:19,21:32:40:0.525:2	0/1:0,9:32:9:1.00:2	./.	./.	0/1:1,79:31:80:0.988:2	0/1:60,53:31:113:0.469:2	0/1:62,44:30:106:0.415:2	./.	0/1:0,52:32:52:1.00:2	0/1:0,80:32:80:1.00:2
chr19	10129552	rs1122206	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,29:33:54:0.537:2	0/1:15,8:32:23:0.348:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	10131999	rs1644731	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,61:29:61:1.00:2	0/1:0,41:29:41:1.00:2	0/1:9,6:29:15:0.400:2	./.	./.	0/1:50,56:29:106:0.528:2	0/1:55,46:30:101:0.455:2	./.	./.	./.	0/1:0,100:30:100:1.00:2
chr19	10132290	rs747574	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,56:29:119:0.471:2	./.	./.	./.	./.	0/1:34,35:29:69:0.507:2
chr19	10157806	rs73009214	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,52:32:89:0.584:2	0/1:30,40:32:70:0.571:2	./.	./.	./.	0/1:87,71:31:159:0.449:2	./.	0/1:99,81:31:180:0.450:2	./.	./.	./.
chr19	10158107	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:31:91:0.044:2	./.
chr19	10165932	rs8113341	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:29:23:1.00:2	0/1:0,17:29:17:1.00:2	0/1:0,4:32:4:1.00:2	0/1:17,20:30:37:0.541:2	0/1:27,21:29:48:0.438:2	0/1:0,54:29:54:1.00:2	0/1:26,29:30:55:0.527:2	0/1:0,49:29:49:1.00:2	0/1:20,17:30:37:0.459:2	0/1:13,16:30:29:0.552:2	0/1:0,31:28:31:1.00:2
chr19	10166375	rs10403787	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:78,57:32:135:0.422:2	0/1:37,34:32:71:0.479:2	./.	0/1:95,72:31:167:0.431:2	0/1:114,79:31:193:0.409:2	./.	./.	0/1:113,82:31:195:0.421:2	./.	./.	0/1:0,133:32:133:1.00:2
chr19	10169245	rs1993466	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:32:6:1.00:2	./.	0/1:53,32:31:85:0.376:2	0/1:27,19:30:46:0.413:2	./.	./.	./.	0/1:46,18:31:64:0.281:2	./.
chr19	10169261	rs11667703	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:33:8:1.00:2	./.	0/1:56,42:33:98:0.429:2	0/1:30,28:33:58:0.483:2	./.	./.	./.	0/1:52,24:33:76:0.316:2	./.
chr19	10169278	rs4552116	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:30:9:1.00:2	./.	0/1:54,48:30:102:0.471:2	0/1:39,32:29:71:0.451:2	./.	./.	./.	0/1:63,31:30:94:0.330:2	./.
chr19	10218524	rs2305791	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:14,21:32:35:0.600:2	0/1:6,7:31:13:0.538:2	./.	0/1:18,13:31:31:0.419:2	./.	0/1:16,23:32:39:0.590:2	0/1:13,16:31:29:0.552:2	0/1:0,52:32:52:1.00:2	./.	./.	0/1:20,18:29:38:0.474:2
chr19	10221808	rs189917838	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.
chr19	10224526	rs3745600	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,11:31:24:0.458:2	0/1:10,8:31:18:0.444:2	./.	0/1:9,13:31:22:0.591:2	0/1:7,9:29:16:0.563:2	0/1:11,14:31:25:0.560:2	0/1:4,7:29:11:0.636:2	0/1:0,26:31:26:1.00:2	./.	0/1:5,9:33:14:0.643:2	0/1:8,3:32:11:0.273:2
chr19	10225777	rs7401	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,21:30:37:0.568:2	0/1:10,4:31:14:0.286:2	./.	0/1:21,12:31:33:0.364:2	0/1:37,20:30:57:0.351:2	0/1:17,22:29:39:0.564:2	0/1:18,36:30:54:0.667:2	0/1:0,54:29:54:1.00:2	./.	0/1:20,30:29:50:0.600:2	0/1:30,26:30:56:0.464:2
chr19	10226256	rs7710	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,15:30:30:0.500:2	0/1:15,14:28:29:0.483:2	./.	0/1:25,17:29:42:0.405:2	0/1:20,28:29:48:0.583:2	0/1:38,16:25:54:0.296:2	0/1:29,12:31:41:0.293:2	0/1:1,44:29:45:0.978:2	./.	0/1:14,14:29:28:0.500:2	0/1:18,16:30:34:0.471:2
chr19	10229580	rs34658893	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,109:31:192:0.568:2	./.
chr19	10247915	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:31:79:0.051:2	./.	./.
chr19	10250802	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,3:31:31:0.097:2	./.
chr19	10260225	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:33:63:0.063:2	./.	./.
chr19	10262471	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:36:108:0.037:2	./.	./.	./.	./.
chr19	10265312	rs721186	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:30:73:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,10:26:10:1.00:2	0/1:0,102:29:102:1.00:2	0/1:0,149:30:150:1.00:2	0/1:0,97:30:97:1.00:2	0/1:0,171:30:171:1.00:2	0/1:0,147:30:147:1.00:2	0/1:0,103:30:103:1.00:2	0/1:0,112:30:112:1.00:2	0/1:0,94:30:94:1.00:2
chr19	10265437	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:33:126:0.032:2	./.	./.
chr19	10267077	rs2228611	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,76:30:78:0.974:2	0/1:0,41:30:41:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,73:30:73:1.00:2	0/1:35,36:29:71:0.507:2	./.	0/1:65,55:30:120:0.458:2	0/1:68,62:30:130:0.477:2	0/1:4,115:30:119:0.966:2	0/1:57,42:30:99:0.424:2	0/1:57,63:30:120:0.525:2
chr19	10277266	rs117294281	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,29:28:66:0.446:2
chr19	10367416	rs138290957	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,37:27:100:0.370:2	./.	./.	./.	./.	./.
chr19	10367442	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:35:69:0.058:2	./.	./.
chr19	10370490	rs1059840	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,23:31:55:0.418:2	./.	./.	./.	./.	./.	./.
chr19	10394792	rs1799969	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,9:30:10:0.900:2	./.	./.	./.	./.	./.	./.	./.	0/1:41,23:33:64:0.359:2
chr19	10395683	rs5498	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,20:30:36:0.556:2	0/1:7,8:28:15:0.533:2	0/1:0,3:31:3:1.00:2	0/1:28,22:31:50:0.440:2	0/1:21,16:30:37:0.432:2	0/1:17,31:30:48:0.646:2	0/1:32,20:31:52:0.385:2	0/1:29,20:31:49:0.408:2	./.	0/1:0,38:30:38:1.00:2	0/1:21,24:29:45:0.533:2
chr19	10402430	rs115870389	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:14,16:32:30:0.533:2	0/1:9,17:30:26:0.654:2	./.	./.	./.	./.	./.	./.	./.	0/1:8,21:30:29:0.724:2	./.
chr19	10402938	rs1056538	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:0,44:31:44:1.00:2	0/1:43,34:30:77:0.442:2	0/1:22,15:29:37:0.405:2	0/1:22,36:31:58:0.621:2	0/1:26,26:30:52:0.500:2	./.	0/1:22,17:31:39:0.436:2	0/1:10,15:31:25:0.600:2
chr19	10403368	rs2228615	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,16:28:16:1.00:2	0/1:1,57:31:58:0.983:2	0/1:33,39:31:72:0.542:2	0/1:34,45:30:79:0.570:2	0/1:35,27:30:62:0.435:2	0/1:37,32:30:69:0.464:2	./.	0/1:28,21:30:49:0.429:2	0/1:19,26:30:45:0.578:2
chr19	10404519	rs17852402	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,25:32:40:0.625:2	./.	./.	0/1:10,20:32:30:0.667:2	0/1:26,7:32:33:0.212:2	./.	0/1:15,13:31:28:0.464:2	./.
chr19	10406104	rs35318566	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:6,22:32:28:0.786:2	0/1:3,6:32:9:0.667:2	./.	./.	./.	./.	./.	./.	./.	0/1:9,6:30:15:0.400:2	./.
chr19	10407169	rs710845	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,4:32:4:1.00:2	./.	./.	0/1:0,9:34:9:1.00:2	0/1:11,14:32:25:0.560:2	./.	0/1:8,6:33:14:0.429:2	0/1:12,8:31:20:0.400:2	0/1:7,6:32:13:0.462:2	0/1:0,6:31:6:1.00:2	./.
chr19	10415781	rs2291473	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:115,80:29:196:0.410:2	./.	./.	./.	./.	./.	./.
chr19	10419130	rs281417	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,15:30:26:0.577:2	0/1:13,10:31:23:0.435:2	./.	./.	./.	./.	0/1:10,7:32:17:0.412:2
chr19	10426422	rs378395	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:27:4:1.00:2	0/1:3,4:25:7:0.571:2	./.	./.	0/1:2,5:22:7:0.714:2	./.	./.	./.
chr19	10426512	rs78295726	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,9:30:11:0.818:2	./.	./.	./.	./.	./.	./.
chr19	10426628	rs395782	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,8:33:20:0.400:2	0/1:5,6:32:11:0.545:2	./.	0/1:0,29:32:29:1.00:2	0/1:22,12:33:34:0.353:2	0/1:12,21:32:33:0.636:2	./.	0/1:19,15:33:34:0.441:2	./.	0/1:10,8:33:18:0.444:2	0/1:0,15:32:15:1.00:2
chr19	10428992	rs147589440	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:30,9:21:39:0.231:2	./.	./.	0/1:43,6:19:49:0.122:2	./.	0/1:31,6:19:37:0.162:2	0/1:37,12:17:49:0.245:2	0/1:44,16:20:60:0.267:2	0/1:37,12:10:49:0.245:2	./.	0/1:35,8:19:43:0.186:2
chr19	10433876	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,6:31:138:0.043:2	./.	./.	./.	./.
chr19	10444166	rs35633871	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	0/1:1,3:31:4:0.750:2	./.
chr19	10444603	rs2230399	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:112,75:32:187:0.401:2	./.	./.	./.	./.	./.	./.
chr19	10446568	rs2304237	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,3:31:8:0.375:2	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.
chr19	10449358	rs7258015	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,43:30:102:0.422:2	0/1:3,106:31:109:0.972:2	0/1:71,62:30:133:0.466:2	0/1:72,39:32:111:0.351:2	0/1:45,30:31:75:0.400:2	0/1:56,36:30:92:0.391:2
chr19	10449392	rs2304240	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,89:32:89:1.00:2	0/1:0,49:32:49:1.00:2	0/1:16,7:32:23:0.304:2	./.	./.	0/1:0,123:32:123:1.00:2	0/1:1,151:32:152:0.993:2	0/1:1,187:32:188:0.995:2	0/1:0,138:33:138:1.00:2	0/1:0,85:31:85:1.00:2	0/1:62,48:31:110:0.436:2
chr19	10450285	rs281414	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,11:31:27:0.407:2	./.	./.	./.	./.	./.
chr19	10472449	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:34:48:0.083:2	./.	./.	./.
chr19	10472472	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:30:46:0.087:2	./.
chr19	10475652	rs2304256	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:13,16:29:29:0.552:2	0/1:8,6:31:14:0.429:2	0/1:5,6:30:11:0.545:2	./.	./.	./.	./.	./.	0/1:30,22:31:52:0.423:2	./.	./.
chr19	10475686	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,4:30:30:0.133:2	./.
chr19	10476513	rs201917359	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,20:32:32:0.625:2	./.	./.	./.
chr19	10477214	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:33:97:0.041:2
chr19	10506616	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:183,5:31:188:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr19	10506645	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:32:151:0.026:2
chr19	10506665	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:173,4:32:178:0.023:2	./.	./.	0/1:177,5:29:182:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr19	10506682	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:32:170:0.024:2
chr19	10556897	rs118115488	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,23:30:54:0.426:2	./.	./.	./.	./.	./.
chr19	10577843	rs1051738	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,20:32:49:0.408:2	0/1:12,11:32:23:0.478:2	./.	./.	./.	./.	./.	./.	0/1:31,38:32:69:0.551:2	./.	./.
chr19	10600369	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,35:31:76:0.461:2	0/1:16,18:32:34:0.529:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	10600418	rs35074907	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,79:31:79:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr19	10600442	rs1048290	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,66:32:66:1.00:2	0/1:0,41:32:41:1.00:2	0/1:6,6:33:12:0.500:2	./.	./.	0/1:63,48:32:111:0.432:2	./.	0/1:0,114:32:114:1.00:2	0/1:51,40:33:91:0.440:2	0/1:41,45:32:86:0.523:2	0/1:44,28:32:72:0.389:2
chr19	10610236	rs1048287	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:47,55:30:103:0.539:2	0/1:28,23:28:51:0.451:2	./.	./.	./.	./.	./.	0/1:92,103:30:195:0.528:2	./.	0/1:68,53:30:121:0.438:2	./.
chr19	10625067	rs6511701	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:31:30:1.00:2	0/1:1,11:31:12:0.917:2	0/1:0,9:30:9:1.00:2	0/1:0,42:31:43:1.00:2	0/1:0,97:30:97:1.00:2	0/1:22,18:30:40:0.450:2	0/1:0,75:29:75:1.00:2	0/1:54,23:30:77:0.299:2	0/1:36,37:31:73:0.507:2	0/1:0,47:30:47:1.00:2	0/1:0,28:30:28:1.00:2
chr19	10655489	rs200278873	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,16:30:34:0.471:2	0/1:18,10:31:28:0.357:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	10659659	rs2304165	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,8:32:20:0.400:2	0/1:58,74:31:132:0.561:2	./.	0/1:58,75:33:133:0.564:2	./.	./.	./.	./.	0/1:48,45:33:93:0.484:2
chr19	10664632	rs3087689	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,8:30:18:0.444:2	0/1:14,10:32:24:0.417:2	./.	./.	./.	./.	./.	./.	0/1:22,14:34:36:0.389:2	./.	0/1:20,9:31:29:0.310:2
chr19	10665951	rs7251746	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,5:27:7:0.714:2	0/1:11,24:30:35:0.686:2	./.	0/1:22,27:30:49:0.551:2	./.	./.	./.	./.	0/1:18,12:30:30:0.400:2
chr19	10668452	rs3745255	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,3:32:9:0.333:2	0/1:4,3:29:7:0.429:2	./.	0/1:0,5:30:5:1.00:2	0/1:0,8:27:8:1.00:2	0/1:7,9:29:16:0.563:2	0/1:0,4:29:4:1.00:2	0/1:0,6:30:6:1.00:2	0/1:17,4:32:21:0.190:2	0/1:0,5:33:5:1.00:2	0/1:4,3:29:7:0.429:2
chr19	10668673	rs1982074	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,29:30:45:0.644:2	0/1:12,12:28:24:0.500:2	./.	0/1:32,34:28:66:0.515:2	0/1:33,36:28:69:0.522:2	./.	./.	0/1:39,46:29:85:0.541:2	./.	0/1:1,41:30:42:0.976:2	./.
chr19	10670184	rs3826709	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,67:32:67:1.00:2	0/1:0,33:31:33:1.00:2	./.	0/1:61,50:32:111:0.450:2	0/1:43,42:32:85:0.494:2	./.	./.	0/1:55,42:32:97:0.433:2	0/1:61,47:32:108:0.435:2	0/1:0,71:32:71:1.00:2	0/1:41,46:32:87:0.529:2
chr19	10670351	rs45518133	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,59:30:115:0.513:2	./.	./.	./.	./.	./.	./.
chr19	10670992	rs3745249	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:31:2:1.00:2	0/1:3,7:29:10:0.700:2	0/1:5,7:31:12:0.583:2	0/1:3,5:31:8:0.625:2	0/1:0,11:31:11:1.00:2	0/1:4,6:31:10:0.600:2	0/1:10,7:32:17:0.412:2	./.	./.
chr19	10671894	rs11545166	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:33:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	10672327	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:30:127:0.031:2	./.	./.	./.	./.	./.
chr19	10672493	rs12984043	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,13:33:28:0.464:2	0/1:10,10:32:20:0.500:2	0/1:13,17:31:30:0.567:2	0/1:0,21:33:21:1.00:2	./.	./.	./.	0/1:23,20:32:43:0.465:2
chr19	10676423	rs3745245	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:7,8:30:15:0.533:2	./.	0/1:0,6:30:6:1.00:2	0/1:11,5:31:16:0.313:2	0/1:17,7:29:24:0.292:2	0/1:8,10:29:18:0.556:2	0/1:0,8:31:8:1.00:2	0/1:10,16:29:26:0.615:2	0/1:0,7:32:7:1.00:2	./.	0/1:0,7:30:7:1.00:2
chr19	10676537	rs3745244	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	0/1:4,6:35:10:0.600:2	./.	./.
chr19	10676681	rs3218222	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:33:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	10679240	rs1968445	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:30:3:1.00:2	0/1:0,4:30:4:1.00:2	./.	0/1:0,3:32:3:1.00:2	./.
chr19	10689630	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,4:31:67:0.060:2	./.	./.	./.	./.	./.	./.	./.
chr19	10692000	rs1045361	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,39:30:88:0.443:2	0/1:27,18:29:45:0.400:2	./.	0/1:68,57:30:125:0.456:2	0/1:92,101:31:193:0.523:2	./.	./.	0/1:76,85:30:161:0.528:2	./.	0/1:4,105:30:109:0.963:2	./.
chr19	10694720	rs11542916	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,58:30:131:0.443:2	./.	./.	./.	./.	./.
chr19	10738639	rs3087969	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,64:30:64:1.00:2	0/1:0,28:31:28:1.00:2	0/1:6,5:30:11:0.455:2	./.	0/1:57,46:29:103:0.447:2	./.	0/1:1,103:29:104:0.990:2	0/1:0,124:29:124:1.00:2	0/1:59,36:30:95:0.379:2	0/1:1,80:30:81:0.988:2	0/1:0,94:29:94:1.00:2
chr19	10742170	rs2288904	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,24:29:25:0.960:2	0/1:0,32:30:32:1.00:2	0/1:5,7:30:12:0.583:2	./.	0/1:47,34:28:81:0.420:2	./.	0/1:0,76:28:76:1.00:2	0/1:0,65:29:65:1.00:2	0/1:34,22:30:56:0.393:2	0/1:0,33:29:33:1.00:2	0/1:0,39:30:39:1.00:2
chr19	10790563	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:31:138:0.029:2	./.	./.
chr19	10794630	rs2229383	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:27,15:33:42:0.357:2	0/1:14,18:32:32:0.563:2	0/1:12,5:33:17:0.294:2	./.	0/1:97,52:32:149:0.349:2	./.	./.	0/1:0,100:32:100:1.00:2	0/1:49,58:34:107:0.542:2	0/1:0,52:32:52:1.00:2	0/1:0,63:33:63:1.00:2
chr19	10823940	rs11672431	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	./.	./.	./.	0/1:16,9:33:25:0.360:2	./.	./.
chr19	10904480	rs112238216	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,53:30:103:0.515:2
chr19	10935797	rs201780856	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,21:12:99:0.212:2	0/1:72,16:15:88:0.182:2	0/1:100,34:12:134:0.254:2	0/1:103,22:15:125:0.176:2	0/1:76,7:21:84:0.084:2	0/1:48,8:21:56:0.143:2	0/1:60,17:16:77:0.221:2
chr19	10939792	rs2229920	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,53:29:120:0.442:2	0/1:97,71:29:168:0.423:2	0/1:1,111:30:113:0.991:2	./.	0/1:69,62:29:131:0.473:2	0/1:54,43:30:97:0.443:2	./.	0/1:30,32:28:62:0.516:2
chr19	10945708	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:32:116:0.034:2
chr19	10961024	rs73009507	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,17:30:34:0.500:2	0/1:9,10:31:19:0.526:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	11031369	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:29:81:0.049:2	./.	./.
chr19	11034039	rs17850995	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,107:31:111:0.964:2	./.	./.	./.	./.	./.
chr19	11036374	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:32:134:0.030:2	./.	./.	./.
chr19	11100115	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:32:87:0.046:2
chr19	11101993	rs17001073	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,16:31:26:0.615:2	./.	./.
chr19	11105593	rs17001075	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,62:30:111:0.559:2	./.	./.
chr19	11105608	rs7935	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,39:28:80:0.488:2	0/1:29,26:29:55:0.473:2	0/1:10,13:30:23:0.565:2	0/1:68,64:29:132:0.485:2	0/1:100,94:29:194:0.485:2	0/1:1,132:30:133:0.992:2	0/1:78,80:29:158:0.506:2	./.	0/1:49,69:30:118:0.585:2	./.	0/1:65,41:29:106:0.387:2
chr19	11113997	rs74942410	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,47:31:104:0.452:2
chr19	11123647	rs201128299	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,24:10:175:0.137:2	./.	./.	./.	./.	./.
chr19	11123738	rs28997580	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,45:30:100:0.450:2	./.
chr19	11130363	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,4:30:97:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr19	11145691	rs28997582	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,40:30:62:0.645:2
chr19	11145730	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:30:121:0.033:2	./.	./.	./.	./.	./.
chr19	11169514	rs9105	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,36:30:98:0.367:2	./.	./.	./.	./.	./.	./.
chr19	11170839	rs7275	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,3:31:9:0.333:2	./.	./.	./.	0/1:7,9:29:16:0.563:2	0/1:0,23:28:23:1.00:2	./.	0/1:26,13:28:39:0.333:2	0/1:14,12:28:26:0.462:2	./.	./.
chr19	11210912	rs2228671	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,43:31:43:1.00:2	0/1:12,25:31:37:0.676:2	./.	./.	./.	0/1:12,7:30:20:0.368:2	./.
chr19	11222300	rs11669576	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,12:31:25:0.480:2	./.	./.
chr19	11224265	rs5930	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,29:31:59:0.492:2	0/1:14,12:33:26:0.462:2	0/1:2,5:32:7:0.714:2	0/1:0,79:32:80:1.00:2	0/1:47,29:32:76:0.382:2	0/1:0,71:32:72:1.00:2	./.	./.	0/1:0,79:32:79:1.00:2	0/1:33,19:32:52:0.365:2	./.
chr19	11227554	rs1799898	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:52,51:32:103:0.495:2	0/1:37,34:32:71:0.479:2	0/1:8,3:32:11:0.273:2	./.	./.	./.	0/1:66,105:31:171:0.614:2	0/1:81,65:31:146:0.445:2	./.	0/1:56,77:31:133:0.579:2	0/1:85,96:31:181:0.530:2
chr19	11227602	rs688	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,39:32:101:0.386:2	0/1:27,39:31:66:0.591:2	0/1:5,6:32:11:0.545:2	0/1:4,149:31:156:0.974:2	0/1:96,59:31:155:0.381:2	0/1:2,150:31:153:0.987:2	./.	./.	0/1:78,83:33:161:0.516:2	0/1:84,53:32:137:0.387:2	./.
chr19	11230881	rs5925	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,40:32:73:0.548:2	0/1:20,20:32:40:0.500:2	./.	0/1:0,82:32:82:1.00:2	0/1:51,46:30:97:0.474:2	0/1:0,78:32:78:1.00:2	./.	./.	0/1:60,38:32:98:0.388:2	0/1:48,24:31:72:0.333:2	./.
chr19	11233941	rs5927	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,17:32:29:0.586:2	0/1:17,7:32:24:0.292:2	./.	0/1:0,47:33:47:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,33:31:33:1.00:2	0/1:34,30:32:64:0.469:2	0/1:47,37:32:84:0.440:2	0/1:14,16:33:30:0.533:2	0/1:17,12:32:29:0.414:2	0/1:29,28:30:57:0.491:2
chr19	11277232	rs4804573	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:44,23:32:67:0.343:2	0/1:17,24:32:41:0.585:2	0/1:5,6:32:11:0.545:2	./.	0/1:0,91:31:91:1.00:2	0/1:32,39:31:71:0.549:2	0/1:0,97:32:97:1.00:2	0/1:0,92:32:92:1.00:2	0/1:49,48:33:97:0.495:2	0/1:0,81:32:81:1.00:2	0/1:32,39:32:72:0.549:2
chr19	11303554	rs17616661	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,92:29:185:0.500:2	./.	./.	./.	0/1:98,98:30:196:0.500:2	./.
chr19	11303579	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:168,4:34:172:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr19	11303943	rs3745681	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:31:9:1.00:2	0/1:0,5:32:5:1.00:2	./.	./.	0/1:5,8:32:13:0.615:2	0/1:10,6:32:16:0.375:2	./.	./.	0/1:11,4:32:15:0.267:2	0/1:0,10:31:10:1.00:2	./.
chr19	11304404	rs755237	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,17:32:33:0.515:2	./.	./.	./.	./.	./.
chr19	11304498	rs755238	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,24:30:42:0.571:2	./.	./.	./.	./.	./.
chr19	11305161	rs754529	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,13:33:32:0.406:2	./.	./.	./.	./.	./.
chr19	11319491	rs8409	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,67:31:67:1.00:2	0/1:73,46:30:119:0.387:2	0/1:49,48:30:97:0.495:2	0/1:2,94:31:97:0.979:2	0/1:0,86:31:86:1.00:2	0/1:49,32:31:81:0.395:2	./.	0/1:0,37:30:37:1.00:2
chr19	11326119	rs2304155	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:30:10:0.400:2	0/1:0,93:30:93:1.00:2	0/1:53,59:30:112:0.527:2	0/1:41,38:30:79:0.481:2	0/1:2,105:30:107:0.981:2	0/1:3,116:29:119:0.975:2	0/1:0,55:30:55:1.00:2	./.	0/1:1,75:30:76:0.987:2
chr19	11326125	rs2304154	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:32:8:0.375:2	0/1:0,89:32:89:1.00:2	0/1:45,53:32:98:0.541:2	0/1:35,29:32:64:0.453:2	0/1:2,104:33:106:0.981:2	0/1:3,113:32:116:0.974:2	0/1:0,57:33:57:1.00:2	./.	0/1:0,67:32:67:1.00:2
chr19	11327608	rs4804151	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,10:32:17:0.588:2	0/1:1,163:33:164:0.994:2	0/1:114,63:32:177:0.356:2	0/1:104,72:32:176:0.409:2	0/1:2,172:32:174:0.989:2	0/1:1,160:32:161:0.994:2	0/1:0,136:33:136:1.00:2	./.	0/1:1,101:33:102:0.990:2
chr19	11327626	rs4804152	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,7:32:14:0.500:2	0/1:1,148:32:149:0.993:2	0/1:92,45:31:137:0.328:2	0/1:95,65:32:160:0.406:2	0/1:2,153:32:155:0.987:2	0/1:0,153:32:154:1.00:2	0/1:1,128:33:129:0.992:2	./.	0/1:1,100:32:101:0.990:2
chr19	11332570	rs3810307	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,67:31:195:0.344:2	./.	./.	./.	./.
chr19	11347493	rs737337	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,17:29:35:0.486:2	./.	./.	./.	./.
chr19	11350340	rs892066	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,69:32:142:0.486:2	./.	./.	./.	./.	./.	./.
chr19	11352331	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,3:33:60:0.050:2	./.	./.	./.	./.	./.	./.	./.
chr19	11358799	rs12978266	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:31:19:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,4:30:4:1.00:2	0/1:21,14:31:35:0.400:2	0/1:12,8:31:20:0.400:2	0/1:0,43:31:43:1.00:2	0/1:12,8:31:20:0.400:2	0/1:2,30:30:32:0.938:2	0/1:13,16:31:29:0.552:2	0/1:0,21:31:21:1.00:2	0/1:0,19:30:19:1.00:2
chr19	11363146	rs8113582	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:31:33:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,3:31:3:1.00:2	0/1:18,17:32:35:0.486:2	0/1:16,17:30:33:0.515:2	0/1:0,50:31:50:1.00:2	0/1:0,43:31:43:1.00:2	0/1:1,36:30:37:0.973:2	0/1:21,15:32:36:0.417:2	0/1:0,32:32:32:1.00:2	0/1:0,34:32:34:1.00:2
chr19	11373140	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.
chr19	11436221	rs12981706	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,15:31:25:0.600:2
chr19	11446174	rs143406149	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,43:30:78:0.551:2	./.	./.	./.	./.	./.
chr19	11465316	rs6887	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:33:44:1.00:2	0/1:0,40:32:40:1.00:2	0/1:2,6:34:8:0.750:2	0/1:26,30:33:56:0.536:2	0/1:41,40:32:81:0.494:2	0/1:31,37:32:68:0.544:2	./.	./.	0/1:58,41:32:99:0.414:2	0/1:34,17:32:51:0.333:2	./.
chr19	11465336	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:31:36:0.111:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	11493847	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	11508177	rs2291516	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,18:32:29:0.621:2	0/1:11,8:32:19:0.421:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	11516007	rs10416704	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,10:31:32:0.313:2	./.	./.	./.	./.	./.	./.	./.
chr19	11516085	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,45:33:79:0.570:2	./.	./.	./.	./.
chr19	11526759	rs160838	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,31:31:31:1.00:2	0/1:0,20:31:20:1.00:2	./.	0/1:23,19:30:42:0.452:2	./.	0/1:19,13:31:32:0.406:2	0/1:0,39:32:39:1.00:2	./.	./.	0/1:21,6:30:27:0.222:2	0/1:23,19:31:42:0.452:2
chr19	11526765	rs167479	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:31:4:1.00:2	0/1:22,21:31:44:0.488:2	0/1:0,31:29:31:1.00:2	0/1:16,18:29:34:0.529:2	./.	0/1:0,47:31:47:1.00:2	0/1:0,39:30:39:1.00:2	0/1:8,21:30:29:0.724:2	0/1:20,19:31:39:0.487:2
chr19	11529958	rs1549168	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,16:32:16:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,4:32:4:1.00:2	./.	./.	./.	0/1:8,20:31:28:0.714:2	./.	./.	0/1:14,12:32:26:0.462:2	./.
chr19	11537315	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,5:30:121:0.041:2	./.	./.
chr19	11537603	rs35061520	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,64:30:115:0.557:2	./.	./.	0/1:54,52:31:106:0.491:2	./.	./.	0/1:40,44:31:84:0.524:2
chr19	11558275	rs11557488	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,46:30:108:0.426:2	./.	0/1:1,129:29:130:0.992:2	0/1:65,47:30:112:0.420:2	./.	./.	./.	./.
chr19	11558519	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,4:31:37:0.108:2	./.	./.	./.	./.	./.	./.
chr19	11569316	rs2242112	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,65:31:110:0.591:2
chr19	11569397	rs61744781	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,35:31:82:0.427:2	./.	./.	./.	./.	./.	./.
chr19	11598483	rs311805	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,22:31:65:0.338:2
chr19	11598576	rs142199640	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,34:30:72:0.479:2	./.	./.	./.	./.	./.
chr19	11598657	rs117673751	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,8:30:13:0.615:2	./.	./.
chr19	11623919	rs145074549	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:31:81:0.049:2	./.	./.	./.	./.
chr19	11649741	rs138283881	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,49:31:86:0.570:2	./.	./.
chr19	11664898	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:31:129:0.031:2	./.	./.	./.	./.
chr19	11687195	rs2229531	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,10:30:27:0.370:2	0/1:12,19:30:31:0.613:2	./.	./.	./.	./.	./.	0/1:14,9:31:23:0.391:2
chr19	11687351	rs2305799	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,38:30:93:0.409:2	0/1:94,57:31:151:0.377:2	./.	./.	./.	./.	./.	0/1:62,42:31:104:0.404:2
chr19	11687908	rs62638747	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,41:29:92:0.446:2	0/1:61,28:30:89:0.315:2	./.	./.	./.	./.	./.	0/1:46,31:30:77:0.403:2
chr19	11708464	rs72997090	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:32:8:1.00:2	./.	./.	./.	0/1:0,41:32:41:1.00:2	0/1:19,25:32:44:0.568:2	./.	0/1:37,24:32:61:0.393:2	0/1:14,29:32:43:0.674:2
chr19	11796869	rs286299	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,17:31:27:0.630:2	0/1:23,19:32:42:0.452:2	./.	./.	./.	./.	./.	0/1:20,15:32:36:0.429:2
chr19	11797112	rs8108874	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,16:30:48:0.333:2	0/1:12,10:30:22:0.455:2	./.	./.	./.	./.	0/1:43,4:32:47:0.085:2	0/1:35,39:30:74:0.527:2
chr19	11797252	rs185926	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,56:31:158:0.354:2	0/1:65,37:30:102:0.363:2	./.	./.	./.	./.	./.	0/1:113,82:32:195:0.421:2
chr19	11797308	rs286300	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,53:29:142:0.373:2	0/1:62,29:29:91:0.319:2	./.	./.	./.	./.	./.	0/1:83,50:31:133:0.376:2
chr19	11832725	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:33:64:0.063:2	./.
chr19	11832750	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,3:33:48:0.063:2	./.
chr19	11832771	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,4:29:37:0.108:2	./.
chr19	11890921	rs33949590	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,23:32:47:0.489:2	0/1:26,23:32:49:0.469:2	./.	./.	0/1:52,42:32:94:0.447:2
chr19	11891003	rs799193	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,36:32:100:0.360:2	0/1:29,15:31:44:0.341:2	0/1:0,8:32:8:1.00:2	0/1:1,90:32:91:0.989:2	0/1:57,32:31:89:0.360:2	./.	0/1:1,109:32:110:0.991:2	0/1:0,134:32:134:1.00:2	0/1:77,88:33:165:0.533:2	0/1:0,86:32:86:1.00:2	0/1:0,97:32:97:1.00:2
chr19	11917219	rs112159359	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,30:32:79:0.380:2	./.	./.	./.
chr19	11918878	rs11670714	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,30:30:72:0.417:2	0/1:1,69:31:70:0.986:2	./.	0/1:38,30:32:68:0.441:2	0/1:48,33:31:81:0.407:2
chr19	11919211	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,8:16:70:0.114:2	./.	./.
chr19	11941221	rs424132	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,41:31:93:0.441:2	0/1:3,83:30:86:0.965:2	./.	0/1:64,47:31:111:0.423:2	0/1:85,78:32:163:0.479:2
chr19	11942362	rs427880	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,69:33:156:0.442:2	0/1:1,187:33:188:0.995:2	./.	0/1:80,78:33:158:0.494:2	0/1:96,80:33:176:0.455:2
chr19	11942377	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,5:32:184:0.027:2	./.	./.	./.
chr19	11942422	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,5:31:125:0.040:2	./.	./.	./.
chr19	11942560	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,5:32:155:0.032:2	./.	./.	./.	./.	./.
chr19	11942615	rs394416	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,5:32:171:0.029:2	0/1:38,33:33:71:0.465:2	0/1:4,123:33:129:0.969:2	./.	0/1:76,59:32:135:0.437:2	0/1:73,78:33:151:0.517:2
chr19	11942771	rs436411	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,11:31:27:0.407:2	0/1:3,51:31:54:0.944:2	./.	0/1:24,15:32:39:0.385:2	0/1:17,17:31:34:0.500:2
chr19	11942982	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:31:46:0.087:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	11942988	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:32:45:0.089:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	11943022	rs150155929	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,3:33:55:0.055:2	0/1:27,3:33:30:0.100:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	11943697	rs400106	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,14:31:14:1.00:2	0/1:0,17:30:17:1.00:2	./.	0/1:0,27:29:27:1.00:2	0/1:0,26:30:26:1.00:2	0/1:15,14:31:29:0.483:2	0/1:0,31:30:31:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,23:29:23:1.00:2
chr19	11943713	rs56167415	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,11:31:17:0.647:2	./.
chr19	11977008	rs150359950	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,31:31:62:0.500:2	./.	./.	./.
chr19	11978270	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:34:198:0.020:2	./.	./.
chr19	11979164	rs10500209	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,29:31:66:0.439:2	./.	0/1:27,17:31:44:0.386:2	./.
chr19	11979305	rs72994214	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,16:32:45:0.356:2	0/1:12,12:30:24:0.500:2	./.	./.	./.	0/1:23,9:30:32:0.281:2	./.	./.	./.	./.	./.
chr19	11998756	rs3810315	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,29:30:61:0.475:2	./.	./.	./.	./.	./.
chr19	11998777	rs3810314	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,43:32:79:0.544:2	0/1:26,38:31:64:0.594:2	./.	./.	0/1:43,50:32:93:0.538:2	./.	./.	./.
chr19	12014473	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,4:33:181:0.022:2
chr19	12014511	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:124,4:31:128:0.031:2	./.	./.	./.	./.	./.	./.
chr19	12014711	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,4:32:91:0.044:2	./.	./.	./.	./.	./.	./.	./.
chr19	12014727	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,4:32:97:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr19	12014755	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:34:93:0.043:2	./.	./.	./.	./.	./.
chr19	12015545	rs111999105	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,25:31:72:0.347:2	0/1:21,27:32:49:0.563:2	./.	./.	0/1:49,46:32:96:0.484:2	./.	./.	./.
chr19	12015579	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,4:31:76:0.053:2	./.	./.	./.	./.	./.	./.
chr19	12024194	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,5:30:121:0.041:2	./.
chr19	12058336	rs376075	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,25:31:49:0.510:2	./.	./.	./.	./.	./.
chr19	12058341	rs77752522	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,22:31:44:0.500:2	./.	./.	./.	./.	./.
chr19	12058342	rs371404	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,22:31:44:0.500:2	./.	./.	./.	./.	./.
chr19	12059467	rs73509026	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,23:33:45:0.511:2	0/1:8,12:32:20:0.600:2	./.	./.	0/1:35,21:32:56:0.375:2	./.	./.	./.
chr19	12059494	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,4:30:50:0.082:2	./.	./.	./.	./.	./.	./.	./.
chr19	12059645	rs12327617	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,7:32:25:0.280:2	0/1:28,26:32:54:0.481:2	./.	./.	0/1:26,27:32:53:0.509:2
chr19	12060662	rs146267693	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,21:32:46:0.457:2	./.	./.	./.
chr19	12076060	rs7250805	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,19:32:52:0.365:2	0/1:23,28:32:51:0.549:2	0/1:33,20:31:53:0.377:2	./.	0/1:30,23:31:53:0.434:2	./.	./.	./.
chr19	12087921	rs376310072	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:32:121:0.033:2	0/1:181,15:31:196:0.077:2	./.	0/1:170,14:31:184:0.076:2	0/1:175,15:32:190:0.079:2
chr19	12088253	.	G	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,4:31:14:0.286:2	0/1:85,4:31:89:0.045:2	./.	0/1:64,6:32:70:0.086:2	0/1:44,4:32:48:0.083:2	./.	./.	./.	./.
chr19	12088255	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:30:66:0.062:2	./.	./.	./.	./.	./.
chr19	12088265	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:32:60:0.067:2	0/1:43,3:32:46:0.065:2	./.	./.	./.	./.
chr19	12089079	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:34:178:0.022:2	./.	./.
chr19	12089363	rs7253997	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,63:32:144:0.444:2	./.	./.	./.	./.	./.
chr19	12089364	rs7249379	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,65:32:143:0.455:2	./.	./.	./.	./.	./.
chr19	12089549	rs7254258	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,17:32:34:0.500:2	./.	./.	./.	./.	./.
chr19	12089709	rs7254529	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,46:32:112:0.411:2	./.	./.	./.	./.	./.
chr19	12089743	rs7250795	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,50:31:122:0.410:2	./.	./.	./.	./.	./.
chr19	12089805	rs7250894	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,32:32:68:0.471:2	./.	./.	./.	./.	./.
chr19	12089903	rs112017572	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,15:30:25:0.600:2	0/1:11,4:29:15:0.267:2	./.	./.	0/1:3,6:32:9:0.667:2	./.	./.	./.
chr19	12126967	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:30:71:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	12127003	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,5:32:83:0.060:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	12146370	rs3745672	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,21:32:51:0.412:2	0/1:32,27:30:59:0.458:2	./.	./.	0/1:32,56:30:88:0.636:2	./.	./.	./.
chr19	12154799	rs67102109	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,12:33:26:0.500:2	./.
chr19	12155673	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:31:80:0.050:2	./.	./.	./.	./.	./.
chr19	12157253	rs10417006	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,13:31:33:0.394:2	0/1:14,8:31:22:0.364:2	./.	./.	0/1:16,28:33:44:0.636:2	./.	./.	./.
chr19	12186148	rs10424893	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:33:6:1.00:2	0/1:0,5:31:5:1.00:2	./.	./.	0/1:1,3:28:4:0.750:2	./.	0/1:2,6:30:8:0.750:2	0/1:15,8:32:23:0.348:2
chr19	12186611	rs7259684	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,19:31:31:0.613:2	./.	./.	./.	./.	0/1:17,25:33:42:0.595:2	./.
chr19	12186732	rs76842919	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,37:32:41:0.902:2	0/1:22,7:33:29:0.241:2	0/1:23,27:32:50:0.540:2	./.	0/1:26,8:32:34:0.235:2	./.	./.	0/1:28,22:33:50:0.440:2
chr19	12186761	rs7259845	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,30:30:34:0.882:2	0/1:0,30:28:30:1.00:2	0/1:27,22:29:49:0.449:2	./.	0/1:24,11:29:35:0.314:2	./.	0/1:25,28:30:53:0.528:2	0/1:29,20:30:49:0.408:2
chr19	12186773	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,27:32:51:0.529:2
chr19	12186857	rs6511763	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,35:33:37:0.946:2	0/1:1,21:32:22:0.955:2	0/1:29,26:33:55:0.473:2	./.	0/1:52,19:32:71:0.268:2	./.	0/1:44,36:32:80:0.450:2	0/1:45,24:32:69:0.348:2
chr19	12186921	rs8102258	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,42:32:44:0.955:2	0/1:21,10:32:31:0.323:2	0/1:36,24:31:60:0.400:2	./.	0/1:51,15:32:66:0.227:2	./.	./.	0/1:56,20:32:76:0.263:2
chr19	12186922	rs8112094	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,42:30:44:0.955:2	0/1:21,10:31:31:0.323:2	0/1:36,24:29:60:0.400:2	./.	0/1:49,17:30:66:0.258:2	./.	./.	0/1:56,20:30:76:0.263:2
chr19	12187210	rs6511764	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,53:33:55:0.964:2	0/1:0,44:31:44:1.00:2	0/1:35,23:32:58:0.397:2	./.	0/1:14,36:32:50:0.720:2	./.	0/1:16,19:33:35:0.543:2	0/1:26,28:31:54:0.519:2
chr19	12187275	rs376579156	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,4:31:31:0.129:2	./.	./.	0/1:54,4:33:58:0.069:2	./.	0/1:52,3:33:55:0.055:2	./.
chr19	12187307	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,5:32:40:0.125:2	./.	./.	./.	./.	./.	./.
chr19	12187443	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,4:27:51:0.078:2	./.	./.	./.	./.	./.	./.	./.
chr19	12187475	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,4:27:62:0.065:2	./.	./.	./.	./.	./.	./.	./.
chr19	12187502	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,4:32:60:0.067:2	./.	./.	./.	./.	./.	./.	./.
chr19	12187741	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:29:90:0.044:2	./.	./.
chr19	12187861	rs10426017	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,64:33:65:0.985:2	0/1:0,36:32:36:1.00:2	0/1:30,42:33:72:0.583:2	./.	0/1:36,49:32:85:0.576:2	./.	0/1:23,32:33:55:0.582:2	0/1:41,32:33:73:0.438:2
chr19	12187907	rs55703333	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,7:32:32:0.219:2	./.	./.	./.	./.	./.	./.
chr19	12256127	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,44:32:100:0.440:2	./.	./.
chr19	12256358	rs12972621	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,85:32:85:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,12:33:12:1.00:2	./.	./.	./.	0/1:2,49:32:51:0.961:2	0/1:57,37:32:94:0.394:2	0/1:44,52:34:96:0.542:2	./.	./.
chr19	12256912	rs7258368	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,61:31:61:1.00:2	0/1:38,24:30:62:0.387:2	0/1:51,35:32:86:0.407:2	./.	0/1:29,37:31:66:0.561:2	./.	./.	0/1:70,42:32:112:0.375:2
chr19	12383540	rs56056044	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,28:33:28:1.00:2	0/1:17,7:32:24:0.292:2	0/1:17,12:32:29:0.414:2	./.	0/1:28,16:33:44:0.364:2	0/1:26,31:32:57:0.544:2	./.	0/1:39,29:32:68:0.426:2
chr19	12384412	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,33:30:87:0.379:2	./.	./.	./.	./.	./.
chr19	12384580	rs11879168	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,130:31:130:1.00:2	0/1:61,50:30:111:0.450:2	0/1:72,60:30:132:0.455:2	./.	0/1:64,53:30:117:0.453:2	0/1:106,73:31:179:0.408:2	./.	0/1:83,76:30:159:0.478:2
chr19	12405552	rs386901	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,29:33:29:1.00:2	0/1:0,19:33:19:1.00:2	0/1:11,11:31:22:0.500:2	./.	0/1:25,6:32:31:0.194:2	0/1:13,14:34:27:0.519:2	0/1:14,7:33:21:0.333:2	0/1:0,31:33:31:1.00:2
chr19	12430167	rs139855867	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,4:31:68:0.059:2	./.	./.	./.	./.	./.	./.
chr19	12430224	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,4:32:106:0.038:2	./.	./.	./.	./.	./.	./.
chr19	12460783	rs117020952	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:32:10:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	12460897	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:32:95:0.042:2	./.	0/1:112,6:33:118:0.051:2	./.	./.
chr19	12460898	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:32:96:0.042:2	./.	./.	./.	./.
chr19	12460962	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:35:82:0.049:2	./.	./.
chr19	12461355	.	A	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:117,5:32:122:0.041:2	./.	0/1:148,6:31:154:0.039:2	0/1:116,4:32:120:0.033:2	0/1:137,4:31:141:0.028:2	./.	./.	./.
chr19	12461361	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:125,5:29:130:0.038:2	./.	0/1:151,6:28:157:0.038:2	0/1:122,4:30:126:0.032:2	./.	./.	./.	./.
chr19	12461389	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,6:30:156:0.038:2	0/1:117,4:30:121:0.033:2	0/1:136,4:31:140:0.029:2	./.	./.	./.
chr19	12461626	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,4:31:83:0.048:2	./.	./.	./.	./.	./.	./.
chr19	12461785	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:29:87:0.046:2	./.	./.	./.	./.	./.
chr19	12462839	rs117612375	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,49:33:102:0.480:2	./.	./.
chr19	12501281	rs2006651	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:179,17:32:196:0.087:2	0/1:155,9:32:164:0.055:2	./.	0/1:162,31:32:194:0.161:2	./.	./.	./.	0/1:179,14:31:194:0.073:2	0/1:171,22:33:193:0.114:2	0/1:172,25:31:197:0.127:2	0/1:164,25:31:189:0.132:2
chr19	12501347	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:132,5:31:137:0.036:2	0/1:124,4:31:128:0.031:2	./.	./.	0/1:149,5:32:154:0.032:2	./.	./.
chr19	12501367	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:115,4:31:119:0.034:2	./.	./.	./.	./.	./.	./.
chr19	12501446	rs201078380	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,4:33:85:0.047:2	./.	./.	0/1:98,6:33:104:0.058:2	./.	./.	./.	./.	0/1:146,6:33:152:0.039:2	./.
chr19	12501466	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:111,4:32:115:0.035:2	./.	./.	./.	./.	0/1:138,4:32:142:0.028:2	./.
chr19	12502457	rs4804669	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,73:31:76:0.961:2	0/1:0,47:30:47:1.00:2	0/1:8,5:30:13:0.385:2	0/1:49,33:29:82:0.402:2	0/1:0,37:30:37:1.00:2	0/1:1,60:30:61:0.984:2	0/1:1,41:30:42:0.976:2	0/1:53,30:30:83:0.361:2	0/1:43,35:32:78:0.449:2	0/1:0,53:30:53:1.00:2	0/1:2,76:30:78:0.974:2
chr19	12502564	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,4:31:100:0.040:2	./.	./.	./.	./.	./.	./.
chr19	12502581	rs186790203	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:33:118:0.034:2	./.
chr19	12502787	rs12974755	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:124,69:32:193:0.358:2	./.	0/1:7,173:32:180:0.961:2	0/1:118,74:32:192:0.385:2	./.	./.	./.
chr19	12502998	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,21:30:86:0.244:2	0/1:86,14:30:100:0.140:2	0/1:79,13:32:92:0.141:2	0/1:113,24:31:137:0.175:2	./.	0/1:116,12:32:128:0.094:2	./.
chr19	12503408	rs2910992	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:117,5:33:122:0.041:2	0/1:70,6:32:76:0.079:2	./.	0/1:99,9:29:108:0.083:2	./.	./.	0/1:61,10:32:71:0.141:2	0/1:108,6:32:114:0.053:2	0/1:115,9:33:124:0.073:2	0/1:75,11:30:86:0.128:2	0/1:128,20:32:148:0.135:2
chr19	12504200	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:105,33:31:139:0.239:2	0/1:77,23:32:100:0.230:2	./.	./.	./.	./.	0/1:85,22:31:107:0.206:2	0/1:138,29:32:167:0.174:2	./.	./.	./.
chr19	12511840	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,4:30:23:0.174:2	./.
chr19	12511842	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,4:27:22:0.182:2	./.
chr19	12511871	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,4:30:16:0.250:2	./.
chr19	12540971	rs28559848	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:107,84:32:191:0.440:2	0/1:99,56:32:155:0.361:2	0/1:20,6:32:26:0.231:2	0/1:123,67:31:190:0.353:2	./.	./.	0/1:107,43:32:150:0.287:2	0/1:136,58:32:194:0.299:2	0/1:111,79:33:190:0.416:2	0/1:111,83:32:194:0.428:2	0/1:113,64:32:177:0.362:2
chr19	12541141	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:33:100:0.040:2	0/1:92,4:32:96:0.042:2	./.
chr19	12541214	rs7256321	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,59:32:116:0.509:2	0/1:43,35:32:78:0.449:2	0/1:9,7:31:17:0.438:2	0/1:66,75:32:141:0.532:2	./.	./.	0/1:43,28:32:71:0.394:2	0/1:55,60:32:115:0.522:2	0/1:76,63:33:139:0.453:2	0/1:42,58:32:100:0.580:2	0/1:89,80:32:171:0.473:2
chr19	12541250	rs45531232	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:45,48:32:93:0.516:2	0/1:38,29:32:67:0.433:2	0/1:8,6:31:14:0.429:2	./.	./.	./.	0/1:36,25:32:61:0.410:2	0/1:56,54:32:110:0.491:2	0/1:76,66:34:142:0.465:2	./.	0/1:75,58:33:133:0.436:2
chr19	12541532	rs10422063	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:32:6:1.00:2	0/1:20,27:31:47:0.574:2	0/1:1,28:31:29:0.966:2	0/1:0,60:30:60:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,29:32:29:1.00:2	0/1:26,9:34:35:0.257:2	0/1:0,39:31:39:1.00:2	0/1:36,10:31:46:0.217:2
chr19	12541542	rs34507016	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,29:30:53:0.547:2	./.	./.	./.	./.	./.	0/1:19,20:31:40:0.513:2	./.
chr19	12541544	rs35055629	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,29:30:53:0.547:2	./.	./.	./.	./.	./.	0/1:21,20:28:41:0.488:2	./.
chr19	12541547	rs10402252	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:32:5:0.800:2	./.	0/1:3,38:33:43:0.927:2	0/1:1,68:32:69:0.986:2	0/1:12,15:32:27:0.556:2	0/1:8,27:31:35:0.771:2	./.	0/1:32,19:31:52:0.373:2	./.
chr19	12541795	rs35699767	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,52:32:117:0.444:2	0/1:26,13:32:39:0.333:2	0/1:12,6:31:18:0.333:2	0/1:53,50:31:103:0.485:2	./.	./.	0/1:40,29:32:69:0.420:2	0/1:49,40:31:89:0.449:2	0/1:57,56:32:113:0.496:2	0/1:50,52:31:102:0.510:2	0/1:62,52:32:114:0.456:2
chr19	12542338	rs183324058	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:123,6:34:129:0.047:2	./.	./.	./.	0/1:71,4:30:75:0.053:2	./.	0/1:93,4:32:97:0.041:2	0/1:121,6:32:127:0.047:2	./.	0/1:120,4:32:124:0.032:2	0/1:133,4:33:137:0.029:2
chr19	12542355	rs4804183	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:78,45:32:123:0.366:2	0/1:35,35:32:70:0.500:2	0/1:6,5:32:11:0.455:2	0/1:61,48:33:109:0.440:2	./.	./.	0/1:57,41:32:98:0.418:2	0/1:87,55:32:142:0.387:2	0/1:77,67:33:144:0.465:2	0/1:76,60:33:136:0.441:2	0/1:77,69:32:146:0.473:2
chr19	12542653	rs369138475	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,88:31:158:0.561:2	0/1:59,63:30:122:0.516:2	0/1:14,13:30:27:0.481:2	0/1:94,91:30:185:0.492:2	./.	./.	0/1:72,65:30:137:0.474:2	0/1:97,75:30:173:0.436:2	0/1:105,80:31:185:0.432:2	0/1:65,81:31:146:0.555:2	0/1:93,81:30:175:0.466:2
chr19	12542654	rs28599549	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,89:31:159:0.560:2	0/1:59,63:31:122:0.516:2	0/1:14,13:30:27:0.481:2	0/1:95,91:31:186:0.489:2	./.	./.	0/1:71,65:31:136:0.478:2	0/1:98,76:31:174:0.437:2	0/1:109,80:32:189:0.423:2	0/1:64,81:31:145:0.559:2	0/1:94,81:31:175:0.463:2
chr19	12542772	rs1134389	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,42:30:79:0.532:2	0/1:23,73:30:96:0.760:2	0/1:63,20:30:83:0.241:2	0/1:101,29:29:130:0.223:2	./.	0/1:85,28:31:113:0.248:2	./.
chr19	12543251	rs138584869	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,12:32:67:0.179:2	0/1:33,17:31:50:0.340:2	0/1:7,4:32:11:0.364:2	0/1:43,17:32:60:0.283:2	./.	./.	0/1:28,9:32:37:0.243:2	0/1:36,13:31:49:0.265:2	0/1:67,20:31:87:0.230:2	0/1:40,12:32:52:0.231:2	0/1:71,28:32:99:0.283:2
chr19	12543974	rs142442656	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:137,48:32:186:0.259:2	0/1:84,37:32:121:0.306:2	./.	./.	./.	./.	0/1:146,35:31:181:0.193:2	0/1:141,53:31:194:0.273:2	./.	./.	./.
chr19	12551715	rs11881297	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,26:31:64:0.406:2	0/1:19,13:30:32:0.406:2	0/1:0,6:29:6:1.00:2	0/1:28,51:30:79:0.646:2	0/1:0,45:29:45:1.00:2	0/1:0,79:30:79:1.00:2	0/1:0,18:31:18:1.00:2	0/1:1,61:30:62:0.984:2	0/1:44,30:31:74:0.405:2	0/1:0,57:29:57:1.00:2	0/1:29,28:30:57:0.491:2
chr19	12551729	rs62110751	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:34,29:29:63:0.460:2	0/1:21,11:30:32:0.344:2	0/1:3,5:25:8:0.625:2	./.	./.	./.	0/1:15,8:29:23:0.348:2	0/1:39,35:27:74:0.473:2	0/1:51,30:29:81:0.370:2	./.	0/1:37,29:27:66:0.439:2
chr19	12575310	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,3:32:31:0.097:2	./.	./.	./.	./.
chr19	12575330	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,5:25:58:0.086:2	0/1:34,4:32:38:0.105:2	0/1:64,3:34:67:0.045:2	./.	./.	./.
chr19	12575416	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,3:33:55:0.055:2	./.	./.	./.
chr19	12576049	rs7259240	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,7:31:16:0.438:2	./.	0/1:2,111:31:113:0.982:2	0/1:2,126:31:128:0.984:2	0/1:74,44:31:118:0.373:2	0/1:82,53:32:135:0.393:2	./.	0/1:79,42:32:121:0.347:2	./.
chr19	12576357	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:31:153:0.026:2	./.	./.	./.	./.	./.
chr19	12577659	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.	./.
chr19	12577660	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:31:66:0.061:2	./.	./.	./.	./.	./.
chr19	12691335	rs3745652	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,30:32:69:0.435:2	0/1:26,20:32:46:0.435:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	12692001	rs3745651	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	0/1:0,14:32:14:1.00:2	0/1:7,5:31:12:0.417:2	0/1:3,9:32:12:0.750:2	0/1:13,9:33:22:0.409:2	0/1:12,6:33:18:0.333:2	./.	0/1:13,12:32:25:0.480:2
chr19	12692476	rs187754525	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,35:31:109:0.321:2	./.	./.	./.
chr19	12720024	rs74777066	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,73:32:153:0.477:2	./.
chr19	12760211	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:33:111:0.036:2	./.	./.
chr19	12768948	rs35836657	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,5:31:25:0.200:2	./.	./.	./.	./.	./.	./.
chr19	12772090	rs1133330	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,14:32:14:1.00:2	0/1:153,4:33:157:0.025:2	0/1:114,70:32:184:0.380:2	0/1:75,71:32:146:0.486:2	0/1:111,83:33:194:0.428:2	0/1:104,70:33:174:0.402:2	0/1:83,77:33:160:0.481:2	./.	0/1:61,82:33:143:0.573:2
chr19	12772165	rs1054487	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,19:31:19:1.00:2	0/1:168,6:33:174:0.034:2	0/1:101,64:31:165:0.388:2	0/1:103,79:31:182:0.434:2	0/1:88,73:31:161:0.453:2	0/1:105,70:31:175:0.400:2	0/1:102,76:31:178:0.427:2	./.	0/1:83,88:32:171:0.515:2
chr19	12774208	rs1054486	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:14,21:32:35:0.600:2	0/1:11,11:32:22:0.500:2	./.	0/1:21,13:31:34:0.382:2	./.	0/1:28,33:32:61:0.541:2	0/1:38,50:32:88:0.568:2	./.	0/1:27,18:34:45:0.400:2	./.	./.
chr19	12774537	rs117843968	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,19:31:33:0.576:2	./.	./.	./.	./.
chr19	12780179	rs62108388	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,14:30:42:0.333:2	0/1:11,5:30:16:0.313:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	12780204	rs117131055	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,29:33:65:0.446:2	./.	0/1:32,25:31:57:0.439:2
chr19	12792390	rs34610671	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,27:30:74:0.365:2	./.	./.	./.	./.	./.
chr19	12805424	rs117566511	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,34:32:80:0.425:2	./.	0/1:55,39:32:94:0.415:2
chr19	12863429	rs79300835	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,18:32:28:0.643:2
chr19	12863449	rs374373357	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:31:77:0.052:2	./.
chr19	12864151	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,13:30:179:0.073:2	./.	./.	./.	./.	./.
chr19	12868839	rs149797899	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,8:30:23:0.348:2	./.	./.	./.	./.	./.	./.
chr19	12876948	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	12876964	rs897804	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	12877042	rs35337531	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,15:30:15:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr19	12885685	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.	./.	./.	./.
chr19	12903937	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,4:30:44:0.091:2	./.	./.	./.	./.	./.	./.
chr19	12904009	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:32:167:0.024:2	./.	./.
chr19	12936617	rs13628	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,50:32:85:0.588:2	./.	./.	./.	./.	./.	./.	./.
chr19	12958697	rs2290688	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:40,30:31:70:0.429:2	0/1:11,21:31:32:0.656:2	./.	0/1:46,50:32:96:0.521:2	./.	0/1:37,35:30:72:0.486:2	./.	0/1:43,67:31:110:0.609:2	0/1:45,32:31:77:0.416:2	./.	./.
chr19	12963143	rs1078264	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:24,24:29:48:0.500:2	0/1:12,14:30:26:0.538:2	./.	0/1:33,35:30:68:0.515:2	./.	0/1:53,53:30:106:0.500:2	./.	0/1:36,39:30:75:0.520:2	0/1:29,41:31:70:0.586:2	./.	./.
chr19	12978655	rs56114354	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,6:32:8:0.750:2	./.	0/1:1,2:31:3:0.667:2
chr19	12984477	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:29:7:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr19	12985576	rs11085822	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:22,10:30:32:0.313:2	0/1:5,7:30:12:0.583:2	./.	0/1:17,18:30:35:0.514:2	./.	0/1:24,16:29:40:0.400:2	./.	0/1:24,25:30:49:0.510:2	0/1:25,13:30:38:0.342:2	./.	./.
chr19	12989560	rs2293682	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:22,36:30:58:0.621:2	0/1:25,25:32:50:0.500:2	./.	0/1:49,36:31:85:0.424:2	./.	./.	./.	0/1:49,57:31:106:0.538:2	0/1:51,31:31:82:0.378:2	./.	./.
chr19	13007121	rs188548539	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,27:31:53:0.509:2	0/1:9,13:30:22:0.591:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	13008607	rs1060218	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:17,25:25:42:0.595:2	0/1:11,8:29:19:0.421:2	0/1:3,5:29:8:0.625:2	./.	./.	./.	0/1:28,31:27:59:0.525:2	0/1:25,47:27:72:0.653:2	0/1:30,39:26:69:0.565:2	0/1:29,22:25:52:0.431:2	0/1:36,23:26:59:0.390:2
chr19	13010520	rs8012	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:32,18:31:50:0.360:2	0/1:25,26:28:51:0.510:2	./.	./.	0/1:21,17:28:38:0.447:2	0/1:0,81:29:81:1.00:2	0/1:30,15:27:45:0.333:2	0/1:36,32:29:68:0.471:2	0/1:1,61:29:62:0.984:2	0/1:29,25:30:55:0.463:2	0/1:62,53:29:115:0.461:2
chr19	13035006	rs1045913	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:33:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	13035609	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:30:117:0.034:2	./.	./.	./.	./.	./.
chr19	13035752	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:32:93:0.043:2	./.	./.
chr19	13059147	rs11558955	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,6:27:26:0.231:2	./.	./.	./.	./.	./.
chr19	13192555	rs201174259	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,32:31:70:0.457:2	./.
chr19	13211821	rs151073349	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	./.	./.
chr19	13211843	rs117072928	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,5:31:7:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	13220285	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:145,5:35:150:0.033:2	./.	./.	./.	./.	./.	./.
chr19	13264398	rs1042164	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,5:29:7:0.714:2	0/1:4,5:30:9:0.556:2	./.	0/1:0,19:28:19:1.00:2	0/1:8,10:28:18:0.556:2	./.	./.	0/1:10,7:30:17:0.412:2	./.	./.	./.
chr19	13264883	rs113016450	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:32:7:0.571:2	./.	./.	0/1:20,15:31:35:0.429:2	./.	./.	./.	./.	0/1:13,6:33:19:0.316:2
chr19	13265270	rs3745992	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,14:31:42:0.333:2	0/1:12,9:32:21:0.429:2	./.	0/1:0,58:31:59:1.00:2	0/1:30,22:31:52:0.423:2	./.	./.	0/1:21,34:31:55:0.618:2	./.	./.	./.
chr19	13319693	rs16051	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:30:12:0.250:2	0/1:0,3:31:3:1.00:2	0/1:0,7:29:7:1.00:2	./.	./.	0/1:1,3:23:4:0.750:2	./.	./.
chr19	13321482	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:31:63:0.063:2
chr19	13387904	rs16030	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,32:31:58:0.552:2	./.	0/1:35,22:32:57:0.386:2	0/1:24,25:32:49:0.510:2	./.	0/1:0,60:32:60:1.00:2
chr19	13409390	rs16025	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,56:29:90:0.622:2	./.	0/1:34,45:30:79:0.570:2	./.	0/1:65,50:29:115:0.435:2	0/1:57,57:30:114:0.500:2
chr19	13414594	rs16016	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,27:29:52:0.519:2	./.	./.	0/1:28,21:31:50:0.429:2	./.	./.
chr19	13445208	rs2248069	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,8:31:23:0.348:2	0/1:14,15:31:29:0.517:2	0/1:0,16:32:16:1.00:2	0/1:35,30:31:66:0.462:2	./.	0/1:0,43:30:43:1.00:2	0/1:33,25:31:58:0.431:2	0/1:0,61:31:61:1.00:2	0/1:1,52:32:53:0.981:2	0/1:0,41:31:41:1.00:2	0/1:0,59:31:59:1.00:2
chr19	13470522	rs16006	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,75:32:148:0.507:2	./.	./.	0/1:63,59:33:122:0.484:2	./.	./.
chr19	13862584	rs200292706	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:31:130:0.031:2	./.	./.	./.
chr19	13868669	rs6511886	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:14,23:33:37:0.622:2	0/1:7,10:33:17:0.588:2	0/1:2,4:28:6:0.667:2	./.	./.	0/1:25,27:31:52:0.519:2	./.	0/1:0,46:32:46:1.00:2	./.	./.	0/1:23,25:33:48:0.521:2
chr19	13885309	rs1128749	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,4:28:8:0.500:2	0/1:32,28:28:60:0.467:2	./.	0/1:21,26:28:47:0.553:2	./.	0/1:0,96:29:96:1.00:2	./.	./.	./.
chr19	13885484	rs10104	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,15:33:34:0.441:2	0/1:99,96:33:195:0.492:2	./.	0/1:100,84:32:184:0.457:2	./.	0/1:1,189:33:190:0.995:2	./.	./.	./.
chr19	13910539	rs28480458	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,36:33:96:0.375:2	./.	./.	./.	0/1:61,60:31:121:0.496:2	./.	./.	0/1:35,31:32:66:0.470:2
chr19	13934296	rs76549352	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,22:30:54:0.407:2	./.	./.	0/1:37,29:28:66:0.439:2	./.	./.	./.	./.
chr19	13936385	rs62620757	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,42:32:80:0.525:2	./.	./.
chr19	13941022	rs56177954	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,15:33:38:0.395:2	./.	./.	0/1:36,43:33:79:0.544:2	./.	./.	./.	./.
chr19	13941075	rs112261548	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,31:32:58:0.534:2	./.	./.
chr19	13947292	rs895819	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,44:29:106:0.415:2	0/1:37,41:28:78:0.526:2	0/1:7,8:29:15:0.533:2	0/1:84,55:29:139:0.396:2	0/1:1,156:29:157:0.994:2	./.	./.	0/1:100,81:29:181:0.448:2	./.	0/1:65,53:29:119:0.449:2	0/1:27,31:29:58:0.534:2
chr19	13988416	rs2016163	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,14:30:40:0.350:2	0/1:27,16:30:43:0.372:2	./.	./.	./.	./.	./.	0/1:6,5:28:11:0.455:2
chr19	13993709	rs111386677	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,8:32:23:0.348:2	./.	./.
chr19	14000170	rs3803892	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,22:30:44:0.500:2	0/1:29,22:28:51:0.431:2	./.	./.	./.	./.	./.	0/1:17,16:28:33:0.485:2
chr19	14000226	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,26:28:56:0.464:2	./.	./.	./.	./.	./.	./.
chr19	14000400	rs3803891	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,22:31:64:0.344:2	0/1:28,14:30:42:0.333:2	./.	./.	./.	./.	./.	0/1:19,21:29:40:0.525:2
chr19	14000870	rs2305775	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,19:31:32:0.594:2	0/1:11,6:29:17:0.353:2	./.	./.	./.	./.	./.	0/1:9,11:31:20:0.550:2
chr19	14015711	rs6511898	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,41:30:110:0.373:2	0/1:45,19:30:64:0.297:2	./.	./.	./.	./.	./.	0/1:78,73:32:151:0.483:2
chr19	14024235	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,33:29:76:0.440:2	./.	./.	./.	./.	./.
chr19	14024269	rs61740117	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:31:8:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	14028927	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:169,4:33:174:0.023:2	./.	./.	./.	./.	./.	./.
chr19	14029592	rs200121704	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,32:29:60:0.533:2	./.	./.	./.	./.	./.	./.	./.
chr19	14030689	rs10410239	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,73:29:141:0.518:2	./.	./.	./.	./.	./.	./.	0/1:66,62:30:128:0.484:2
chr19	14034243	rs202057391	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:28,20:32:48:0.417:2	0/1:12,16:31:28:0.571:2	./.	./.	./.	./.	./.	./.	./.	0/1:19,23:31:42:0.548:2	./.
chr19	14037492	rs201844043	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,43:32:108:0.398:2	./.	./.
chr19	14037513	rs201251295	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,39:33:75:0.520:2	0/1:29,26:33:55:0.473:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	14038791	rs2305777	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,20:32:20:1.00:2	0/1:0,16:31:16:1.00:2	./.	./.	./.	./.	./.	0/1:24,17:30:41:0.415:2	0/1:18,9:32:27:0.333:2	0/1:0,26:31:26:1.00:2	./.
chr19	14040896	rs11669628	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,21:31:56:0.375:2	0/1:38,20:31:58:0.345:2	0/1:40,14:32:54:0.259:2	./.	./.	./.	./.
chr19	14043544	rs138402331	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,34:31:70:0.500:2
chr19	14044200	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,4:30:92:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr19	14065341	rs10409785	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,50:31:119:0.420:2	./.	./.	./.	./.	./.	0/1:39,25:30:64:0.391:2
chr19	14067023	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	14069979	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,3:28:16:0.188:2
chr19	14074430	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	14077334	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:33:85:0.047:2
chr19	14083644	rs199688398	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,5:32:13:0.385:2	./.
chr19	14083761	rs2305780	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr19	14088860	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:106,4:30:110:0.036:2	./.	./.	./.	./.	./.	./.
chr19	14092970	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:32:85:0.047:2	./.	./.	./.	./.
chr19	14141666	rs78161395	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,13:31:13:1.00:2	0/1:26,27:31:53:0.509:2	./.	./.	./.	./.	./.	0/1:34,27:31:61:0.443:2	./.
chr19	14142705	rs113593439	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,23:31:46:0.500:2	./.	./.	./.	./.	./.	./.
chr19	14153293	rs35026308	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,42:31:43:0.977:2	0/1:22,19:31:41:0.463:2	0/1:22,28:31:50:0.560:2	0/1:21,19:31:41:0.475:2	./.	0/1:19,27:30:46:0.587:2
chr19	14164527	rs61749577	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,7:29:15:0.467:2	./.	./.	./.	./.	./.
chr19	14165204	rs75389771	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,5:32:20:0.250:2	./.	./.	./.	./.	./.	0/1:103,78:32:181:0.431:2	./.	./.
chr19	14165278	rs56202530	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,61:28:62:1.00:2	0/1:0,57:29:57:1.00:2	./.	0/1:42,46:27:88:0.523:2	0/1:49,43:27:92:0.467:2	./.	0/1:57,41:27:99:0.418:2	./.	0/1:49,41:28:92:0.456:2	./.	./.
chr19	14200109	rs8062	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:73,56:32:129:0.434:2	0/1:48,54:31:102:0.529:2	./.	./.	0/1:99,95:32:194:0.490:2	./.	./.	./.	./.	./.	./.
chr19	14204485	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,13:32:193:0.067:2
chr19	14218166	rs56105247	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,26:33:51:0.510:2	./.
chr19	14231325	rs8102267	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:16,29:31:45:0.644:2	0/1:20,16:31:36:0.444:2	./.	./.	0/1:47,40:32:87:0.460:2	./.	./.	./.	./.	./.	./.
chr19	14231330	rs8102698	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:19,31:32:50:0.620:2	0/1:24,16:32:40:0.400:2	./.	./.	0/1:52,43:32:95:0.453:2	./.	./.	./.	./.	./.	./.
chr19	14232366	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:32:69:0.058:2	./.
chr19	14262934	rs148486592	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,24:31:46:0.522:2
chr19	14263360	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,7:16:44:0.159:2	./.
chr19	14263683	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:33:152:0.026:2	./.	./.
chr19	14268799	rs2242222	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:35,49:32:84:0.583:2	0/1:31,18:31:49:0.367:2	./.	./.	0/1:81,56:31:137:0.409:2	./.	./.	./.	./.	./.	./.
chr19	14271505	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,16:32:31:0.516:2	./.	./.
chr19	14273641	rs3745462	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:41,41:32:82:0.500:2	0/1:28,16:32:44:0.364:2	./.	./.	0/1:93,75:32:168:0.446:2	./.	./.	./.	./.	./.	./.
chr19	14281564	rs75971830	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,6:32:70:0.086:2	./.	./.	./.	./.
chr19	14288369	rs146417164	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:30:13:0.308:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	14294400	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,48:30:81:0.593:2	./.	./.	./.	./.	./.	./.
chr19	14294407	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:31:62:0.065:2	./.	./.	./.
chr19	14294422	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,4:32:26:0.154:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	14499537	rs201012570	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:84,4:32:88:0.045:2	./.	./.	0/1:128,9:32:137:0.066:2	./.	./.	./.	./.	./.	./.	./.
chr19	14501757	rs141563774	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:124,4:31:128:0.031:2	./.	./.	./.	./.	./.	0/1:132,5:31:137:0.036:2
chr19	14501830	rs147816079	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:33:155:0.026:2
chr19	14507213	.	A	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:108,13:19:121:0.107:2	./.	./.	0/1:132,11:16:144:0.077:2	0/1:116,11:16:128:0.087:2	0/1:122,10:17:132:0.076:2	./.	./.	0/1:117,19:14:137:0.140:2	0/1:104,11:15:115:0.096:2	./.
chr19	14507228	rs201775477	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:90,11:14:101:0.109:2	./.	./.	0/1:107,16:14:123:0.130:2	0/1:86,16:12:103:0.157:2	0/1:106,20:14:126:0.159:2	0/1:114,31:12:145:0.214:2	0/1:107,26:12:133:0.195:2	0/1:121,17:11:139:0.123:2	0/1:97,11:17:108:0.102:2	0/1:90,8:21:99:0.082:2
chr19	14508603	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:111,32:29:143:0.224:2	./.	./.	./.	./.	./.	./.
chr19	14512256	rs61733714	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,28:32:45:0.622:2	./.	0/1:30,15:31:45:0.333:2	./.	./.	./.
chr19	14512489	rs2230748	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,47:32:96:0.490:2	./.	0/1:43,54:32:97:0.557:2	./.	./.	./.	0/1:43,29:32:72:0.403:2	./.
chr19	14513516	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:143,4:32:147:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr19	14517594	rs74937637	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,33:30:69:0.478:2	./.	./.	./.	./.	./.	0/1:1,61:31:62:0.984:2
chr19	14517736	rs143056436	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:33:11:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	14517964	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,18:32:196:0.092:2	./.	./.
chr19	14517975	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:34:191:0.021:2	./.	./.
chr19	14521079	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:33:196:0.020:2	./.	./.	./.
chr19	14561234	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,4:31:25:0.160:2	./.
chr19	14561722	rs8107892	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:33:25:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,4:34:4:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,47:33:47:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,48:32:48:1.00:2
chr19	14574959	rs2230538	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,15:31:30:0.500:2	0/1:20,7:31:27:0.259:2
chr19	14578369	rs10409467	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,15:32:28:0.536:2	./.	0/1:13,22:31:35:0.629:2	./.	./.	./.
chr19	14580177	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:29:194:0.026:2	./.
chr19	14580328	rs2230539	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,40:29:98:0.408:2	./.	0/1:42,48:30:91:0.533:2	./.	0/1:36,28:31:64:0.438:2	0/1:42,46:29:88:0.523:2
chr19	14580635	rs74889788	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,72:31:144:0.500:2	0/1:88,56:31:144:0.389:2	0/1:96,39:30:135:0.289:2	./.	./.	./.
chr19	14580638	rs78858120	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,71:29:143:0.497:2	0/1:89,57:28:146:0.390:2	0/1:100,38:28:138:0.275:2	./.	./.	./.
chr19	14581063	rs1042728	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,39:33:92:0.424:2	0/1:66,50:32:116:0.431:2	0/1:54,33:33:87:0.379:2	./.	./.	./.
chr19	14582539	rs8598	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,6:32:6:1.00:2	./.	./.
chr19	14582584	rs56119754	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.
chr19	14583582	rs11668633	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:10,12:29:22:0.545:2	0/1:2,5:27:7:0.714:2	./.	0/1:11,8:27:19:0.421:2	./.	./.	./.	0/1:16,15:28:31:0.484:2	0/1:8,17:30:25:0.680:2	./.	./.
chr19	14584317	rs3745459	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,5:32:9:0.556:2
chr19	14589378	rs1127307	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,41:32:74:0.554:2	./.	0/1:33,41:31:74:0.554:2	./.	0/1:27,30:32:57:0.526:2	0/1:40,23:32:63:0.365:2
chr19	14590236	rs3815715	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,5:32:5:1.00:2	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	0/1:7,7:32:14:0.500:2	0/1:0,18:32:18:1.00:2	./.	./.
chr19	14590279	rs45458894	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,8:31:21:0.381:2	./.	./.	./.	./.
chr19	14593653	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2
chr19	14600238	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,15:31:36:0.417:2
chr19	14600294	rs138492990	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,38:33:73:0.521:2	0/1:15,13:33:28:0.464:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,39:32:83:0.476:2
chr19	14600305	rs4926220	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,41:30:73:0.562:2	0/1:20,18:31:38:0.474:2	./.	./.	./.	./.
chr19	14600563	rs10422158	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,66:33:69:0.957:2	0/1:1,42:32:43:0.977:2	./.	./.	./.	0/1:0,58:31:58:1.00:2	0/1:0,41:33:41:1.00:2	0/1:28,15:33:43:0.349:2	./.	0/1:0,56:32:56:1.00:2	0/1:37,59:33:96:0.615:2
chr19	14600672	rs35245836	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,54:32:55:0.982:2	./.
chr19	14629150	rs3962158	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:33:8:0.500:2	./.	./.
chr19	14673322	rs113855270	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,61:29:143:0.427:2	./.	./.	./.
chr19	14674714	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,30:32:67:0.448:2	./.	./.	./.	./.
chr19	14677711	rs139981425	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:30:7:0.857:2	./.	./.	./.	./.	0/1:26,40:31:66:0.606:2	./.	./.	./.
chr19	14682804	rs9543	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,13:29:35:0.371:2	0/1:17,12:29:29:0.414:2	./.	./.	0/1:0,15:29:15:1.00:2	0/1:25,13:28:38:0.342:2	0/1:4,5:27:9:0.556:2	./.	0/1:0,15:29:15:1.00:2	0/1:15,8:28:23:0.348:2	./.
chr19	14694226	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:173,12:31:185:0.065:2	./.	./.	./.	./.	./.	./.
chr19	14698483	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:179,8:31:188:0.043:2	./.	./.	./.	./.	./.	./.
chr19	14705356	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:34:107:0.037:2	./.	./.	./.	./.
chr19	14705499	rs34335847	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,24:30:57:0.421:2	./.	./.	./.	./.	./.	./.
chr19	14705509	rs35049360	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,21:30:56:0.375:2	./.	./.	./.	./.	./.	./.
chr19	14736316	rs61729083	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:84,108:31:194:0.563:2	0/1:56,67:30:123:0.545:2	./.	0/1:97,96:31:193:0.497:2	./.	./.	0/1:87,87:31:174:0.500:2	./.	./.	./.	0/1:111,84:31:195:0.431:2
chr19	14744032	rs732722	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,20:31:54:0.370:2	0/1:19,13:32:32:0.406:2	./.	0/1:39,46:32:85:0.541:2	0/1:0,43:31:43:1.00:2	0/1:36,32:32:68:0.471:2	0/1:53,34:32:87:0.391:2	0/1:71,38:33:109:0.349:2	./.	0/1:32,28:33:60:0.467:2	./.
chr19	14752325	rs8102646	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,21:32:50:0.420:2	0/1:31,26:32:57:0.456:2	0/1:8,6:32:14:0.429:2	0/1:2,69:32:71:0.972:2	0/1:0,86:32:87:1.00:2	0/1:0,85:31:85:1.00:2	0/1:84,51:32:135:0.378:2	0/1:70,47:32:117:0.402:2	0/1:0,90:33:90:1.00:2	0/1:0,83:33:83:1.00:2	0/1:46,40:32:86:0.465:2
chr19	14758168	rs34226397	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,39:31:72:0.542:2	0/1:1,36:30:37:0.973:2	0/1:32,39:30:71:0.549:2	./.	0/1:33,35:30:68:0.515:2	./.	0/1:0,60:32:60:1.00:2	./.
chr19	14769339	rs4606855	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,61:33:94:0.649:2	0/1:25,17:33:42:0.405:2	0/1:1,12:33:13:0.923:2	0/1:0,114:33:114:1.00:2	0/1:0,97:32:97:1.00:2	0/1:71,66:32:137:0.482:2	0/1:0,95:33:95:1.00:2	./.	./.	0/1:0,110:33:110:1.00:2	./.
chr19	14772878	rs61729084	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,44:30:103:0.427:2	./.	./.	./.	./.	./.	./.
chr19	14805888	rs61995698	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,48:33:98:0.490:2	./.
chr19	14815918	rs75269766	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,23:27:45:0.511:2	./.	0/1:34,36:27:71:0.514:2	./.	./.	./.	0/1:29,23:29:52:0.442:2	./.
chr19	14817548	rs6511961	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,21:31:36:0.583:2	0/1:19,12:31:31:0.387:2	0/1:0,6:30:6:1.00:2	0/1:0,40:30:40:1.00:2	0/1:0,43:31:43:1.00:2	0/1:23,16:31:39:0.410:2	0/1:0,60:31:60:1.00:2	0/1:0,41:31:41:1.00:2	./.	0/1:0,41:31:41:1.00:2	./.
chr19	14827830	rs3885179	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,36:32:105:0.346:2	./.	./.	./.	./.	./.	./.
chr19	14829749	rs3764626	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,3:31:10:0.300:2	0/1:47,44:31:91:0.484:2	./.	./.	0/1:73,73:31:146:0.500:2	0/1:68,55:32:123:0.447:2	./.	0/1:51,42:32:93:0.452:2	./.
chr19	14847013	rs1859258	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,54:29:127:0.425:2	0/1:37,27:29:64:0.422:2	./.	./.	./.	0/1:77,61:29:138:0.442:2	0/1:61,45:28:107:0.425:2	./.
chr19	14847088	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,3:32:43:0.070:2	./.	./.	./.	./.	./.	./.	./.
chr19	14857055	rs58281547	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,46:32:133:0.346:2	./.
chr19	14862247	rs142522626	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,42:31:103:0.408:2	./.	./.	./.	./.	./.	./.
chr19	14862284	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:123,4:32:127:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr19	14862430	rs2524383	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,31:32:70:0.449:2	0/1:26,24:32:50:0.480:2	0/1:0,5:33:5:1.00:2	0/1:50,45:33:95:0.474:2	0/1:61,47:32:108:0.435:2	./.	0/1:67,47:32:114:0.412:2	0/1:78,56:32:135:0.418:2	0/1:37,43:33:80:0.538:2	0/1:0,91:32:91:1.00:2	./.
chr19	14863305	rs61731999	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:47,4:27:51:0.078:2	./.	./.	0/1:59,10:27:69:0.145:2	0/1:48,23:26:71:0.324:2	0/1:63,6:27:69:0.087:2	0/1:86,6:24:92:0.065:2	0/1:74,9:26:83:0.108:2	0/1:54,12:26:66:0.182:2	0/1:49,10:27:59:0.169:2	./.
chr19	14875388	rs35612307	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,29:30:49:0.592:2	0/1:11,14:30:25:0.560:2	./.	0/1:22,51:30:73:0.699:2	0/1:29,20:30:49:0.408:2	0/1:0,51:29:51:1.00:2	0/1:27,18:30:45:0.400:2	0/1:29,39:30:68:0.574:2	0/1:3,51:29:54:0.944:2	./.	0/1:0,54:29:55:1.00:2
chr19	14876125	rs117165240	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,100:32:191:0.529:2	./.	./.	./.	./.	./.	./.	./.
chr19	14876483	rs112937438	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:176,22:28:198:0.111:2	./.	./.	./.	./.	./.	./.
chr19	14877799	rs12976472	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,5:34:5:1.00:2	0/1:0,2:32:2:1.00:2	./.	0/1:0,5:33:5:1.00:2	0/1:66,6:32:72:0.083:2	0/1:0,5:32:5:1.00:2	0/1:6,5:34:11:0.455:2	./.	0/1:0,3:34:3:1.00:2	./.	0/1:0,7:30:7:1.00:2
chr19	14877806	rs12976475	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,3:33:3:1.00:2	./.	./.	0/1:0,3:30:3:1.00:2	0/1:72,6:27:78:0.077:2	0/1:0,3:31:3:1.00:2	0/1:6,4:32:10:0.400:2	./.	0/1:0,2:34:2:1.00:2	./.	0/1:0,7:31:7:1.00:2
chr19	14877845	rs10420288	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	0/1:0,2:33:2:1.00:2	./.	./.	./.	0/1:0,3:33:3:1.00:2	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.
chr19	14877848	rs10418767	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	0/1:0,2:30:2:1.00:2	./.	./.	./.	0/1:0,3:28:3:1.00:2	./.	./.	./.	./.	./.
chr19	14877857	rs10418770	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,2:29:2:1.00:2	0/1:0,3:32:3:1.00:2	./.	0/1:0,8:28:8:1.00:2	0/1:106,9:32:115:0.078:2	0/1:0,11:31:11:1.00:2	0/1:8,7:30:15:0.467:2	./.	0/1:0,8:32:9:1.00:2	./.	./.
chr19	14884751	rs78992533	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,39:31:96:0.406:2	./.	./.	./.	./.	./.	./.
chr19	14884841	rs41360944	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:74,52:30:126:0.413:2	./.	./.	./.	./.	./.	./.
chr19	14887596	rs2286362	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,49:29:100:0.490:2	./.	0/1:75,6:29:81:0.074:2	./.	./.	./.	./.
chr19	14910210	rs73004304	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,27:32:50:0.540:2	./.	./.	0/1:31,24:32:55:0.436:2	./.	0/1:38,33:33:71:0.465:2	0/1:27,18:31:45:0.400:2	./.
chr19	14910321	rs16979912	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,18:33:31:0.581:2	./.	./.	0/1:7,9:31:16:0.563:2	./.	0/1:18,13:33:31:0.419:2	0/1:25,10:30:35:0.286:2	./.
chr19	14910438	rs10415312	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:33:51:1.00:2	0/1:0,34:32:34:1.00:2	0/1:3,9:31:12:0.750:2	0/1:0,65:32:65:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,65:32:65:1.00:2	0/1:42,33:32:76:0.440:2	0/1:0,74:32:74:1.00:2
chr19	14910573	rs10415562	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:31:69:1.00:2	0/1:0,43:32:43:1.00:2	0/1:6,4:30:10:0.400:2	0/1:33,34:31:67:0.507:2	0/1:0,54:31:54:1.00:2	0/1:49,31:31:80:0.388:2	0/1:0,63:32:63:1.00:2	0/1:0,87:31:87:1.00:2	0/1:0,72:32:72:1.00:2	0/1:28,43:31:71:0.606:2	0/1:51,53:31:104:0.510:2
chr19	14910654	rs17230134	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,6:31:13:0.462:2	0/1:52,47:30:99:0.475:2	./.	./.	0/1:33,34:29:67:0.507:2	./.	0/1:49,51:30:100:0.510:2	0/1:44,43:29:87:0.494:2	./.
chr19	14938421	rs62122652	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,14:32:26:0.538:2	./.	0/1:15,7:33:22:0.318:2	./.	./.	./.	./.	./.
chr19	14938616	rs2190686	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:62,38:32:100:0.380:2	0/1:23,17:33:40:0.425:2	0/1:8,6:34:14:0.429:2	./.	0/1:59,54:32:113:0.478:2	./.	0/1:64,49:32:113:0.434:2	0/1:72,48:32:120:0.400:2	./.	0/1:34,28:31:62:0.452:2	0/1:56,45:32:101:0.446:2
chr19	14951898	rs3752195	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:30,22:32:52:0.423:2	0/1:35,13:32:48:0.271:2	./.	./.	./.	./.	0/1:47,28:31:75:0.373:2	0/1:61,32:31:93:0.344:2	./.	./.	./.
chr19	14952017	rs11880955	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,18:32:33:0.545:2	./.	./.	./.	0/1:0,40:32:40:1.00:2	./.
chr19	14952238	rs12972670	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,60:29:104:0.577:2	./.	./.	./.	0/1:1,88:29:89:0.989:2	./.
chr19	14952560	rs12985894	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,37:31:73:0.507:2	./.	./.	./.	0/1:2,46:32:48:0.958:2	./.
chr19	14991439	rs34590588	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,5:25:105:0.048:2	./.	./.	./.	./.	./.	./.
chr19	14991507	rs112660270	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,9:31:36:0.250:2	./.	./.	./.	./.	./.
chr19	14991643	rs10401818	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,3:33:10:0.300:2	0/1:88,64:32:152:0.421:2	./.	./.	0/1:35,32:32:67:0.478:2	0/1:69,67:32:136:0.493:2	./.	./.	./.
chr19	14991963	rs10404119	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,55:32:101:0.545:2	./.	./.	0/1:55,45:31:100:0.450:2	0/1:63,35:31:98:0.357:2	./.	0/1:39,22:31:61:0.361:2	0/1:48,47:32:95:0.495:2
chr19	14992031	rs10405129	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,28:32:62:0.452:2	./.	./.	0/1:14,16:31:30:0.533:2	0/1:20,20:32:40:0.500:2	./.	0/1:25,21:32:46:0.457:2	0/1:36,31:32:67:0.463:2
chr19	14992042	rs10405136	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:27,32:32:59:0.542:2	0/1:25,14:32:39:0.359:2	./.	0/1:35,26:32:61:0.426:2	./.	./.	0/1:15,13:32:28:0.464:2	0/1:0,33:31:33:1.00:2	./.	0/1:0,44:31:44:1.00:2	0/1:38,26:32:64:0.406:2
chr19	14992045	rs10404335	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,25:30:60:0.417:2	./.	./.	0/1:15,13:31:28:0.464:2	0/1:16,17:30:33:0.515:2	./.	0/1:25,21:30:46:0.457:2	0/1:38,27:31:65:0.415:2
chr19	15052665	rs11883178	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,53:31:117:0.453:2	./.	./.	./.	./.
chr19	15053181	rs74951519	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,28:32:80:0.350:2	./.	./.	./.	./.
chr19	15063757	rs2229896	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:63,79:28:142:0.556:2	0/1:32,33:29:65:0.508:2	./.	./.	./.	./.	0/1:91,90:29:181:0.497:2	./.	./.	./.	./.
chr19	15083693	rs3746295	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:10,9:29:19:0.474:2	0/1:3,8:29:11:0.727:2	./.	0/1:0,42:29:42:1.00:2	./.	0/1:7,17:28:24:0.708:2	0/1:19,17:29:36:0.472:2	0/1:1,32:30:33:0.970:2	0/1:8,16:31:24:0.667:2	0/1:0,18:30:18:1.00:2	0/1:10,14:31:24:0.583:2
chr19	15131273	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,12:12:81:0.152:2	./.	./.	./.	./.	./.	./.
chr19	15131330	rs35352238	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:43,36:30:79:0.456:2	0/1:16,27:31:43:0.628:2	./.	0/1:46,42:31:88:0.477:2	./.	./.	./.	./.	./.	./.	./.
chr19	15132641	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:32:45:0.089:2	./.	./.	./.	./.	./.
chr19	15133762	rs8111625	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,131:32:131:1.00:2	0/1:0,77:31:77:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,176:33:176:1.00:2	0/1:82,66:32:148:0.446:2	0/1:106,79:33:185:0.427:2	0/1:2,130:32:132:0.985:2	0/1:86,78:32:164:0.476:2	0/1:0,177:33:177:1.00:2	0/1:2,151:32:153:0.987:2	0/1:87,55:32:142:0.387:2
chr19	15133787	rs10424547	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:62,49:32:111:0.441:2	0/1:39,26:32:65:0.400:2	./.	0/1:91,58:32:149:0.389:2	./.	./.	./.	./.	./.	./.	./.
chr19	15133803	rs116923487	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,29:32:66:0.439:2
chr19	15198024	rs59166286	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,98:32:194:0.505:2	./.	0/1:118,77:33:195:0.395:2	./.	./.
chr19	15198263	rs8105277	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:29:69:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,120:29:120:1.00:2	0/1:0,117:30:117:1.00:2	0/1:0,106:30:106:1.00:2	0/1:0,130:30:130:1.00:2	0/1:0,127:29:127:1.00:2	0/1:0,93:30:93:1.00:2	0/1:0,62:30:62:1.00:2	0/1:1,88:29:89:0.989:2
chr19	15198292	rs8104843	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,41:29:71:0.577:2	0/1:27,31:29:58:0.534:2	0/1:6,10:31:16:0.625:2	0/1:0,124:30:124:1.00:2	0/1:0,118:29:118:1.00:2	0/1:0,127:29:127:1.00:2	0/1:2,135:30:137:0.985:2	0/1:2,127:29:129:0.984:2	0/1:0,116:30:116:1.00:2	0/1:1,70:30:71:0.986:2	0/1:0,86:29:86:1.00:2
chr19	15198441	rs73008811	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,57:32:130:0.438:2	./.	0/1:67,56:33:123:0.455:2	./.	./.
chr19	15198507	rs8108721	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,48:32:104:0.462:2	0/1:45,57:32:102:0.559:2	0/1:22,9:31:31:0.290:2	0/1:1,131:32:133:0.992:2	0/1:0,182:32:182:1.00:2	0/1:2,166:32:168:0.988:2	0/1:0,172:32:173:1.00:2	0/1:4,157:32:161:0.975:2	0/1:2,170:33:172:0.988:2	0/1:2,134:32:136:0.985:2	0/1:1,167:32:168:0.994:2
chr19	15198606	rs73008812	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,34:28:76:0.447:2	./.	0/1:44,42:29:86:0.488:2	./.	./.
chr19	15198631	rs8105737	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,34:33:82:0.415:2	0/1:27,16:33:43:0.372:2	0/1:4,5:32:9:0.556:2	0/1:0,71:33:71:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,92:32:92:1.00:2	0/1:43,41:33:85:0.488:2	0/1:2,83:32:85:0.976:2	0/1:45,35:34:80:0.438:2	0/1:1,56:32:57:0.982:2	0/1:0,81:33:81:1.00:2
chr19	15198751	rs16980312	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,59:31:116:0.509:2	./.	0/1:58,60:33:118:0.508:2	./.	./.
chr19	15198764	rs12975625	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,49:32:108:0.454:2	0/1:31,19:31:51:0.380:2	0/1:4,11:31:15:0.733:2	0/1:0,124:32:124:1.00:2	0/1:0,107:32:107:1.00:2	0/1:0,111:32:111:1.00:2	0/1:2,118:32:120:0.983:2	0/1:2,124:32:126:0.984:2	0/1:0,126:33:126:1.00:2	0/1:1,90:32:91:0.989:2	0/1:0,113:32:113:1.00:2
chr19	15198791	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,54:31:137:0.394:2	./.	./.	./.	./.	./.	./.
chr19	15198851	rs16980313	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,75:33:183:0.410:2	./.	0/1:86,82:33:168:0.488:2	./.	./.
chr19	15222492	rs33980637	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,6:30:14:0.429:2	./.	./.	./.	./.	./.
chr19	15226970	rs2074262	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,7:32:16:0.438:2	0/1:7,7:31:14:0.500:2	./.	0/1:13,7:31:20:0.350:2	0/1:0,19:31:19:1.00:2	0/1:11,15:30:26:0.577:2	0/1:7,11:30:18:0.611:2	0/1:20,11:31:31:0.355:2	0/1:10,7:32:17:0.412:2	0/1:11,10:26:21:0.476:2	0/1:0,19:30:19:1.00:2
chr19	15227030	rs2074263	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,20:31:38:0.526:2	0/1:16,15:31:31:0.484:2	./.	0/1:0,46:30:46:1.00:2	0/1:0,63:31:63:1.00:2	0/1:21,36:31:57:0.632:2	0/1:30,31:31:61:0.508:2	0/1:0,77:31:77:1.00:2	0/1:22,35:32:57:0.614:2	0/1:0,41:31:41:1.00:2	0/1:0,51:32:51:1.00:2
chr19	15229993	rs1131177	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,15:28:44:0.341:2	./.	0/1:24,17:29:41:0.415:2	./.	./.
chr19	15233581	rs2074265	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,63:31:63:1.00:2	0/1:76,41:31:117:0.350:2	0/1:62,38:31:100:0.380:2	0/1:34,44:32:78:0.564:2	0/1:34,43:31:77:0.558:2	./.
chr19	15233732	rs59102460	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,6:29:15:0.400:2	./.	./.	./.	./.
chr19	15235783	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:32:41:0.098:2	./.	./.	./.
chr19	15271771	rs1044009	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,6:24:9:0.667:2	0/1:1,9:31:10:0.900:2	0/1:0,4:30:4:1.00:2	0/1:0,13:29:13:1.00:2	./.	0/1:0,9:30:9:1.00:2	./.	0/1:3,5:30:8:0.625:2	0/1:0,13:30:13:1.00:2	0/1:4,3:31:7:0.429:2	0/1:0,11:29:11:1.00:2
chr19	15276620	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:33:68:0.059:2	./.	./.
chr19	15285052	rs1044006	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:26:3:1.00:2	./.	0/1:0,2:33:2:1.00:2	./.	./.
chr19	15292437	rs1043997	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,40:27:83:0.482:2	0/1:26,14:28:40:0.350:2	0/1:0,8:26:8:1.00:2	0/1:0,80:28:80:1.00:2	./.	0/1:1,111:28:113:0.991:2	0/1:40,12:29:52:0.231:2	0/1:52,28:26:80:0.350:2	0/1:1,68:28:69:0.986:2	0/1:29,45:29:74:0.608:2	0/1:1,49:27:50:0.980:2
chr19	15295134	rs1043996	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,40:32:88:0.455:2	0/1:17,21:32:39:0.553:2	0/1:0,13:32:13:1.00:2	0/1:3,123:31:126:0.976:2	./.	0/1:0,90:31:90:1.00:2	./.	0/1:96,95:32:191:0.497:2	0/1:0,95:32:95:1.00:2	0/1:52,43:32:95:0.453:2	0/1:2,56:32:58:0.966:2
chr19	15296129	rs190937435	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,12:28:48:0.250:2	./.	./.	./.	./.	./.
chr19	15299051	rs11670799	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,11:31:32:0.344:2	./.	./.	./.	./.	./.	./.	./.
chr19	15300136	rs61749020	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,38:32:78:0.487:2	./.	./.	./.	./.	./.	./.	./.
chr19	15302844	rs1043994	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,19:30:46:0.422:2	0/1:19,5:29:24:0.208:2	0/1:0,6:29:6:1.00:2	0/1:0,47:29:47:1.00:2	./.	0/1:0,63:29:63:1.00:2	0/1:65,35:29:100:0.350:2	0/1:55,47:29:102:0.461:2	0/1:0,60:30:61:1.00:2	0/1:22,25:29:47:0.532:2	0/1:0,28:28:28:1.00:2
chr19	15303225	rs3815188	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,43:30:85:0.506:2	./.	./.	./.	./.
chr19	15303248	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:32:83:0.048:2	./.	./.	./.	./.	./.
chr19	15350594	rs11669901	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,16:30:26:0.615:2	./.	./.	0/1:3,5:33:8:0.625:2	./.	./.
chr19	15350625	rs35676845	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,12:30:23:0.522:2	0/1:10,6:32:16:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	15366205	rs17707730	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,46:32:105:0.438:2	./.	./.	./.	./.	./.
chr19	15383817	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:32:136:0.029:2	./.	./.	./.	./.
chr19	15483812	rs368979758	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:29:7:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	15490485	rs57295859	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,16:28:26:0.615:2	./.	./.	./.	./.
chr19	15508032	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:32:109:0.037:2	./.	./.	./.	./.	./.
chr19	15508362	rs2058322	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,104:33:104:1.00:2	0/1:0,92:33:92:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,140:33:140:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,138:32:138:1.00:2	0/1:0,116:33:116:1.00:2	0/1:0,180:33:180:1.00:2	0/1:0,122:34:122:1.00:2	0/1:0,96:33:96:1.00:2	0/1:1,163:33:164:0.994:2
chr19	15535714	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:138,4:30:142:0.028:2	./.	./.	./.	./.	./.	./.
chr19	15537939	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:31:143:0.028:2	./.	./.	./.
chr19	15537943	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:33:118:0.034:2	./.	./.	./.	./.
chr19	15558918	rs62115899	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,14:30:21:0.667:2	./.	0/1:21,15:32:36:0.417:2	./.	./.
chr19	15563528	rs370102998	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,21:28:46:0.457:2	./.	./.	./.	./.
chr19	15565046	rs9646651	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,65:30:136:0.478:2	./.	./.	./.	0/1:56,34:32:90:0.378:2	./.
chr19	15565302	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,5:25:95:0.053:2	./.	./.	./.	./.	./.
chr19	15569225	rs372081880	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,24:32:58:0.414:2	./.	./.
chr19	15580658	rs2304200	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,5:32:6:0.833:2	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	15582863	rs34440547	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,6:33:6:1.00:2	0/1:0,15:32:15:1.00:2	./.	./.	./.	./.	./.	0/1:6,8:33:14:0.571:2	0/1:7,12:33:19:0.632:2	./.	./.
chr19	15586672	rs892145	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,31:31:31:1.00:2	0/1:0,20:31:20:1.00:2	./.	./.	./.	./.	./.	0/1:34,25:31:59:0.424:2	0/1:22,21:32:43:0.488:2	./.	./.
chr19	15587185	rs733731	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:1,108:32:109:0.991:2	0/1:1,84:32:85:0.988:2	0/1:22,3:31:25:0.120:2	./.	./.	./.	./.	0/1:107,83:32:190:0.437:2	0/1:89,73:31:162:0.451:2	./.	./.
chr19	15587345	rs3813135	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:1,62:32:63:0.984:2	0/1:1,40:31:41:0.976:2	0/1:10,4:32:14:0.286:2	./.	./.	./.	./.	0/1:41,43:32:84:0.512:2	0/1:46,36:30:82:0.439:2	./.	./.
chr19	15590108	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:33:105:0.038:2	./.	./.	./.	./.	./.
chr19	15648148	rs4310987	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,25:31:25:1.00:2	0/1:0,12:30:12:1.00:2	./.	0/1:0,25:30:25:1.00:2	0/1:0,20:31:20:1.00:2	./.	./.	0/1:17,6:31:23:0.261:2	./.	./.	0/1:19,15:28:34:0.441:2
chr19	15648715	rs11666601	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,38:32:81:0.469:2	./.	./.	0/1:49,24:33:73:0.329:2	./.	./.
chr19	15651317	rs118203937	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,45:30:90:0.500:2	0/1:30,32:31:62:0.516:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	15654781	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:32:74:0.054:2	./.	./.	./.	./.
chr19	15726487	rs4646523	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,55:30:55:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,7:30:7:1.00:2	./.	0/1:1,23:31:24:0.958:2	./.	0/1:2,6:30:8:0.750:2	0/1:9,15:31:24:0.625:2	0/1:0,20:32:20:1.00:2	0/1:5,19:31:24:0.792:2	0/1:5,7:29:12:0.583:2
chr19	15726560	rs73001907	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	0/1:31,10:31:41:0.244:2	./.	0/1:17,27:31:44:0.614:2	./.	./.	0/1:21,24:31:45:0.533:2	./.
chr19	15726589	rs11673150	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:15,16:32:31:0.516:2	0/1:7,7:32:14:0.500:2	./.	./.	0/1:16,31:31:47:0.660:2	./.	./.	0/1:43,28:32:71:0.394:2	0/1:32,39:32:71:0.549:2	./.	./.
chr19	15730502	rs61746468	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:61,52:31:113:0.460:2	0/1:34,29:32:63:0.460:2	./.	./.	0/1:46,40:30:86:0.465:2	./.	./.	0/1:54,62:31:116:0.534:2	0/1:56,42:32:98:0.429:2	./.	./.
chr19	15739597	rs2056822	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,14:31:14:1.00:2	0/1:0,6:30:6:1.00:2	./.	0/1:0,24:31:24:1.00:2	0/1:11,8:32:19:0.421:2	0/1:16,26:30:42:0.619:2	0/1:12,10:29:22:0.455:2	0/1:20,11:29:31:0.355:2	0/1:0,29:32:29:1.00:2	./.	0/1:17,12:30:29:0.414:2
chr19	15752364	rs377074942	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,41:32:84:0.488:2	./.
chr19	15757871	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:146,4:32:150:0.027:2	./.	./.	./.	./.	./.	./.	./.
chr19	15757885	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:145,5:27:150:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr19	15757927	rs1290626	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,57:33:117:0.487:2	0/1:37,35:32:72:0.486:2	0/1:10,5:31:15:0.333:2	0/1:0,107:33:107:1.00:2	0/1:2,78:32:81:0.975:2	0/1:1,127:32:128:0.992:2	0/1:1,122:32:123:0.992:2	0/1:71,48:32:119:0.403:2	0/1:64,63:33:127:0.496:2	0/1:0,105:33:105:1.00:2	0/1:47,38:32:85:0.447:2
chr19	15758035	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,4:29:84:0.048:2	./.	./.	./.	./.	./.	./.
chr19	15760053	rs1053037	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:36,30:30:66:0.455:2	0/1:19,20:31:39:0.513:2	./.	./.	0/1:32,22:31:54:0.407:2	./.	./.	0/1:62,39:31:101:0.386:2	0/1:70,59:31:130:0.457:2	./.	./.
chr19	15760062	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:32:102:0.039:2	./.	./.	./.
chr19	15760063	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:31:103:0.039:2	./.	./.	./.
chr19	15760086	rs144381669	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:31:98:0.041:2	./.	./.	./.
chr19	15760881	rs1805040	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,14:28:23:0.609:2	./.	0/1:49,68:31:117:0.581:2	0/1:74,55:29:129:0.426:2	0/1:45,70:31:115:0.609:2	./.	./.	0/1:80,45:32:125:0.360:2	./.
chr19	15760883	rs28371536	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,75:31:124:0.605:2	./.
chr19	15763691	rs1805041	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:34,37:33:71:0.521:2	0/1:12,21:32:33:0.636:2	./.	./.	0/1:27,45:32:72:0.625:2	./.	./.	0/1:43,42:33:85:0.494:2	0/1:36,57:34:93:0.613:2	0/1:39,41:33:80:0.513:2	0/1:35,27:33:62:0.435:2
chr19	15763721	rs1805042	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,30:29:66:0.455:2	0/1:18,15:30:33:0.455:2	0/1:8,3:29:11:0.273:2	0/1:2,77:27:79:0.975:2	0/1:47,26:28:73:0.356:2	0/1:0,71:29:71:1.00:2	0/1:2,58:28:60:0.967:2	./.	./.	0/1:48,38:29:86:0.442:2	./.
chr19	15769379	rs4646515	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,14:33:31:0.452:2	0/1:8,16:33:24:0.667:2	0/1:0,2:29:2:1.00:2	0/1:0,26:32:26:1.00:2	0/1:16,9:33:25:0.360:2	0/1:0,37:32:37:1.00:2	0/1:1,28:32:29:0.966:2	./.	./.	0/1:22,20:31:42:0.476:2	./.
chr19	15769529	rs4646518	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:38,18:32:56:0.321:2	0/1:21,13:30:34:0.382:2	./.	0/1:0,42:32:42:1.00:2	0/1:27,11:32:38:0.289:2	0/1:2,32:32:34:0.941:2	0/1:0,35:32:35:1.00:2	./.	./.	0/1:38,15:32:53:0.283:2	./.
chr19	15769530	rs199944565	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,18:31:57:0.316:2	0/1:21,13:30:34:0.382:2	./.	0/1:0,42:31:42:1.00:2	0/1:28,11:31:39:0.282:2	0/1:2,32:31:34:0.941:2	0/1:0,35:31:35:1.00:2	./.	./.	0/1:37,15:30:53:0.288:2	./.
chr19	15769625	rs1915390	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:32:82:1.00:2	0/1:1,40:32:41:0.976:2	0/1:10,4:33:14:0.286:2	0/1:0,88:32:88:1.00:2	0/1:2,58:32:60:0.967:2	0/1:0,97:32:97:1.00:2	0/1:0,71:31:71:1.00:2	0/1:72,50:32:122:0.410:2	0/1:68,62:33:131:0.477:2	0/1:0,82:32:82:1.00:2	0/1:78,59:32:137:0.431:2
chr19	15770080	rs201612796	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:28:48:0.083:2	./.	./.	./.
chr19	15784377	rs16995376	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,33:32:60:0.550:2	0/1:15,13:32:28:0.464:2	./.	./.	./.	0/1:38,53:32:91:0.582:2	./.	./.	./.	./.	./.
chr19	15784386	rs16995378	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,61:31:62:0.984:2	0/1:0,29:31:29:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,94:31:94:1.00:2	0/1:0,107:32:107:1.00:2	0/1:44,43:31:87:0.494:2	0/1:0,83:32:83:1.00:2	0/1:0,66:32:66:1.00:2	0/1:34,33:31:67:0.493:2
chr19	15789098	rs609636	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:32:94:1.00:2	0/1:1,45:32:46:0.978:2	0/1:0,13:32:13:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,102:31:102:1.00:2	0/1:64,64:31:129:0.500:2	0/1:0,114:32:114:1.00:2	0/1:0,82:32:82:1.00:2	0/1:64,63:33:127:0.496:2
chr19	15789140	rs609290	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:31:94:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,118:32:118:1.00:2	0/1:0,122:32:122:1.00:2	0/1:0,122:32:122:1.00:2	0/1:1,111:32:112:0.991:2	0/1:78,75:32:153:0.490:2	0/1:0,115:32:115:1.00:2	0/1:0,100:31:100:1.00:2	0/1:61,64:31:125:0.512:2
chr19	15793235	rs2285888	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,64:30:118:0.542:2	0/1:38,40:30:78:0.513:2	0/1:7,11:30:18:0.611:2	0/1:88,28:31:116:0.241:2	./.	0/1:0,159:30:160:1.00:2	0/1:94,28:31:122:0.230:2	./.	0/1:97,83:31:180:0.461:2	0/1:1,124:31:125:0.992:2	0/1:78,76:31:154:0.494:2
chr19	15807305	rs688755	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,45:32:107:0.421:2	0/1:25,38:32:63:0.603:2	./.	./.	./.	0/1:63,65:32:128:0.508:2	./.	./.	0/1:53,64:34:117:0.547:2	./.	./.
chr19	15807830	rs593421	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,13:32:50:0.260:2	0/1:23,12:32:35:0.343:2	./.	./.	./.	0/1:43,42:33:85:0.494:2	./.	./.	0/1:35,35:33:70:0.500:2	./.	./.
chr19	15807884	rs593818	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:45,18:32:63:0.286:2	0/1:27,16:32:43:0.372:2	0/1:4,5:32:9:0.556:2	./.	./.	0/1:0,75:32:75:1.00:2	0/1:89,4:34:93:0.043:2	./.	0/1:44,49:33:93:0.527:2	0/1:1,72:32:73:0.986:2	0/1:55,36:32:91:0.396:2
chr19	15838925	rs61733112	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,7:31:193:0.036:2	./.	./.	0/1:136,7:32:143:0.049:2	0/1:121,5:33:126:0.040:2
chr19	15838967	rs2285955	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,30:31:31:0.968:2	0/1:98,89:31:187:0.476:2	0/1:100,92:32:192:0.479:2	./.	0/1:123,66:32:190:0.349:2	./.	0/1:97,77:33:174:0.443:2	0/1:120,73:32:193:0.378:2	0/1:101,84:32:185:0.454:2
chr19	15838972	rs4569397	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:84,76:32:160:0.475:2	0/1:56,45:32:101:0.446:2	./.	0/1:114,79:31:193:0.409:2	./.	0/1:32,159:31:191:0.832:2	0/1:109,80:32:189:0.423:2	./.	0/1:105,73:33:179:0.410:2	0/1:111,84:32:195:0.431:2	./.
chr19	15839023	rs376704842	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,27:31:189:0.144:2	./.	./.	./.	./.	./.
chr19	15839047	rs201424847	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:159,17:32:176:0.097:2	0/1:103,19:31:122:0.156:2	./.	0/1:157,27:32:184:0.147:2	./.	0/1:141,51:32:192:0.266:2	0/1:174,22:32:196:0.112:2	./.	0/1:156,27:33:183:0.148:2	0/1:170,18:32:188:0.096:2	./.
chr19	15839081	rs2067083	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:120,63:31:183:0.344:2	0/1:75,49:31:124:0.395:2	./.	0/1:116,71:31:187:0.380:2	./.	0/1:78,113:31:191:0.592:2	0/1:146,52:31:198:0.263:2	./.	0/1:100,54:31:154:0.351:2	0/1:138,58:30:196:0.296:2	./.
chr19	15839168	rs2003905	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,5:31:31:0.161:2	./.	./.	./.	./.	./.	./.	0/1:145,37:31:182:0.203:2	0/1:121,41:31:162:0.253:2
chr19	15839174	rs2285956	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,24:32:31:0.774:2	0/1:111,67:32:178:0.376:2	0/1:142,53:31:195:0.272:2	./.	0/1:150,46:32:196:0.235:2	./.	0/1:125,60:33:185:0.324:2	0/1:148,38:32:186:0.204:2	0/1:117,45:32:162:0.278:2
chr19	15839201	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:176,5:30:181:0.028:2	./.	./.	./.	./.	./.	./.
chr19	15839246	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:163,8:31:171:0.047:2	0/1:109,10:30:119:0.084:2	./.	./.	./.	./.	./.	./.
chr19	15839365	rs1806931	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,4:33:196:0.020:2	./.	./.	./.	./.	./.	./.
chr19	15839459	rs11669315	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,11:31:30:0.367:2	./.	./.	./.	./.	./.	./.	0/1:107,80:32:187:0.428:2	0/1:101,79:31:181:0.439:2
chr19	15839777	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:32:43:0.093:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	15852223	rs1966357	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,54:32:109:0.495:2	0/1:28,43:32:71:0.606:2	0/1:0,12:32:12:1.00:2	0/1:0,111:32:111:1.00:2	0/1:43,44:32:87:0.506:2	0/1:0,96:31:96:1.00:2	0/1:0,89:31:89:1.00:2	./.	0/1:1,97:33:98:0.990:2	0/1:0,110:32:110:1.00:2	0/1:56,57:32:113:0.504:2
chr19	15852363	rs11670007	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:89,76:31:165:0.461:2	0/1:71,71:32:142:0.500:2	./.	0/1:107,89:31:197:0.454:2	./.	0/1:2,174:31:176:0.989:2	0/1:109,89:32:199:0.449:2	./.	0/1:108,88:32:196:0.449:2	0/1:97,82:32:179:0.458:2	./.
chr19	15852495	rs77313835	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:132,18:17:150:0.120:2	0/1:125,12:18:139:0.088:2	0/1:140,12:19:153:0.079:2	0/1:120,14:17:134:0.104:2	0/1:127,14:20:141:0.099:2	0/1:136,13:20:150:0.087:2	0/1:116,12:20:128:0.094:2	0/1:129,14:23:143:0.098:2
chr19	15852544	rs11670326	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:92,75:32:168:0.449:2	0/1:57,44:31:101:0.436:2	./.	0/1:93,65:31:158:0.411:2	./.	0/1:2,145:30:147:0.986:2	0/1:96,65:31:161:0.404:2	./.	0/1:68,87:32:155:0.561:2	0/1:76,71:31:147:0.483:2	./.
chr19	15852620	rs200371535	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:187,5:33:192:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr19	15852841	rs114568044	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,79:30:176:0.449:2	./.	./.	./.	./.	./.	./.	./.
chr19	15852872	rs2240228	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:30,16:31:46:0.348:2	0/1:90,84:31:174:0.483:2	0/1:100,76:30:176:0.432:2	./.	0/1:102,80:30:182:0.440:2	./.	0/1:101,80:31:181:0.442:2	./.	./.
chr19	15853080	rs2240229	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.	./.	./.	./.	./.	./.	0/1:23,19:31:42:0.452:2	0/1:33,25:32:58:0.431:2
chr19	15853150	rs16980824	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:18,13:32:31:0.419:2	0/1:11,3:32:14:0.214:2	./.	0/1:19,17:33:36:0.472:2	./.	0/1:2,21:31:23:0.913:2	0/1:15,8:30:23:0.348:2	./.	0/1:29,18:33:47:0.383:2	0/1:16,17:32:33:0.515:2	./.
chr19	15905002	rs4808379	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:63,73:30:136:0.537:2	0/1:48,40:30:88:0.455:2	0/1:9,6:30:15:0.400:2	./.	0/1:106,83:31:189:0.439:2	./.	./.	0/1:98,88:30:186:0.473:2	./.	0/1:71,74:29:145:0.510:2	0/1:70,56:29:126:0.444:2
chr19	15905206	rs4808380	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,8:29:26:0.308:2	./.	./.	./.	./.	./.	0/1:192,5:28:197:0.025:2	0/1:73,52:29:125:0.416:2	0/1:77,35:28:112:0.313:2
chr19	15905251	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:167,7:30:175:0.040:2	./.	./.	./.	0/1:164,7:32:171:0.041:2	./.	./.	0/1:179,8:32:187:0.043:2	./.	./.	./.
chr19	15905289	rs61754873	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:69,69:32:138:0.500:2	0/1:48,45:32:93:0.484:2	./.	./.	0/1:77,96:31:173:0.555:2	./.	./.	0/1:89,95:32:184:0.516:2	./.	./.	./.
chr19	15905431	rs4808381	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:121,68:29:189:0.360:2	0/1:50,51:29:101:0.505:2	0/1:18,11:29:29:0.379:2	./.	0/1:143,52:28:195:0.267:2	./.	./.	0/1:124,71:29:195:0.364:2	./.	0/1:97,74:30:172:0.433:2	0/1:116,61:28:177:0.345:2
chr19	15905468	rs62106065	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:119,40:31:159:0.252:2	0/1:61,33:31:95:0.351:2	./.	./.	0/1:141,40:31:181:0.221:2	./.	./.	0/1:125,55:32:180:0.306:2	./.	./.	./.
chr19	15905505	rs62106066	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:97,26:30:123:0.211:2	0/1:59,28:32:87:0.322:2	./.	./.	0/1:135,37:31:172:0.215:2	./.	./.	0/1:140,41:32:181:0.227:2	./.	./.	./.
chr19	15905529	rs62621417	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:91,24:31:115:0.209:2	0/1:60,20:30:80:0.250:2	./.	./.	0/1:139,49:30:188:0.261:2	./.	./.	0/1:143,51:31:194:0.263:2	./.	./.	./.
chr19	15905639	rs3746151	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:31:15:0.600:2	./.	./.	./.	./.	./.	./.	0/1:74,53:33:127:0.417:2	0/1:74,59:33:133:0.444:2
chr19	15905661	rs67455341	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:58,60:30:118:0.508:2	0/1:34,35:31:69:0.507:2	./.	0/1:58,73:29:131:0.557:2	./.	0/1:1,145:30:146:0.993:2	0/1:71,65:30:136:0.478:2	./.	0/1:77,61:30:138:0.442:2	0/1:60,69:30:129:0.535:2	./.
chr19	15918067	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:32:154:0.026:2
chr19	15918177	rs62619246	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:164,19:31:183:0.104:2	0/1:105,12:31:117:0.103:2	./.	./.	0/1:171,26:29:197:0.132:2	./.	./.	0/1:183,13:30:196:0.066:2	./.	./.	./.
chr19	15918201	rs201868341	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:164,20:31:184:0.109:2	0/1:117,13:32:130:0.100:2	./.	./.	0/1:162,30:31:193:0.156:2	./.	./.	0/1:179,16:32:195:0.082:2	./.	./.	./.
chr19	15918238	rs144349437	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:161,15:29:176:0.085:2	0/1:139,12:31:151:0.079:2	./.	./.	0/1:160,21:32:181:0.116:2	./.	./.	0/1:179,17:30:196:0.087:2	./.	./.	./.
chr19	15918308	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:33:170:0.024:2
chr19	15918380	rs28426969	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,129:30:134:0.963:2	0/1:4,83:31:87:0.954:2	./.	0/1:92,59:29:151:0.391:2	0/1:94,64:30:158:0.405:2	0/1:3,144:29:148:0.980:2	0/1:64,65:31:129:0.504:2	0/1:67,83:30:150:0.553:2	0/1:77,71:31:148:0.480:2	0/1:50,62:30:112:0.554:2	./.
chr19	15918434	rs1859299	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,11:32:20:0.550:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	15918455	rs61739573	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,12:30:19:0.632:2	0/1:79,94:30:173:0.543:2	0/1:62,78:30:140:0.557:2	./.	./.	./.	0/1:64,67:31:131:0.511:2	0/1:92,5:31:97:0.052:2	./.
chr19	15918500	rs148327766	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:86,67:32:153:0.438:2	0/1:52,30:32:82:0.366:2	./.	./.	0/1:158,41:31:199:0.206:2	./.	./.	0/1:144,50:31:195:0.258:2	./.	./.	./.
chr19	15918527	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,4:32:25:0.160:2	0/1:180,15:31:195:0.077:2	0/1:147,39:32:186:0.210:2	./.	0/1:163,32:31:195:0.164:2	./.	0/1:129,27:33:156:0.173:2	0/1:126,30:32:156:0.192:2	0/1:106,22:31:128:0.172:2
chr19	15918533	rs201403532	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,31:31:153:0.203:2	0/1:105,26:30:131:0.198:2
chr19	15918620	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:126,10:31:136:0.074:2	./.	./.	./.	./.	0/1:123,14:31:137:0.102:2	0/1:88,13:31:102:0.129:2	./.	0/1:148,4:32:152:0.026:2	0/1:68,9:33:77:0.117:2	./.
chr19	15918647	rs4081570	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:79,41:32:120:0.342:2	0/1:51,27:32:78:0.346:2	0/1:25,5:33:30:0.167:2	0/1:121,51:32:172:0.297:2	./.	0/1:1,127:32:128:0.992:2	0/1:5,74:31:79:0.937:2	./.	0/1:99,54:33:153:0.353:2	0/1:0,72:33:72:1.00:2	0/1:80,7:31:87:0.080:2
chr19	15918654	rs4808382	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,6:31:29:0.207:2	./.	./.	0/1:142,4:31:146:0.027:2	0/1:75,15:28:90:0.167:2	./.	./.	0/1:60,17:29:77:0.221:2	0/1:77,8:25:85:0.094:2
chr19	15918678	rs201182090	G	A,T	.	PASS	AC=2,1;AF=0.222,0.111;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30:193:0.026:2	0/2:32:153:0.484:2	./.	./.	./.	./.	0/1:32:98:0.041:2
chr19	15918729	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,6:32:191:0.031:2	./.	./.	./.	./.	./.
chr19	15918734	rs146111076	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,5:31:137:0.036:2
chr19	15918776	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:32:177:0.023:2	./.
chr19	15918792	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,5:32:192:0.026:2	./.	0/1:165,4:33:169:0.024:2	./.
chr19	15918802	rs4808383	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,11:31:32:0.344:2	./.	./.	./.	0/1:81,101:30:182:0.555:2	./.	./.	0/1:72,86:31:158:0.544:2	0/1:84,74:30:159:0.468:2
chr19	15989696	rs3952537	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:40,15:33:55:0.273:2	0/1:31,8:32:39:0.205:2	./.	0/1:44,29:32:73:0.397:2	0/1:74,18:31:92:0.196:2	0/1:42,31:32:73:0.425:2	0/1:32,28:32:60:0.467:2	0/1:60,14:33:74:0.189:2	0/1:36,10:34:46:0.217:2	./.	./.
chr19	15989730	rs4020346	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:48,31:32:79:0.392:2	0/1:28,15:31:43:0.349:2	./.	0/1:56,43:33:99:0.434:2	0/1:85,31:32:116:0.267:2	0/1:50,49:32:99:0.495:2	0/1:42,48:33:90:0.533:2	0/1:84,28:32:112:0.250:2	0/1:48,14:31:62:0.226:2	0/1:62,7:29:69:0.101:2	./.
chr19	15990431	rs2108622	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,26:31:48:0.542:2	0/1:18,10:31:28:0.357:2	./.	0/1:29,37:30:66:0.561:2	0/1:24,11:28:35:0.314:2	./.	./.	0/1:32,39:30:71:0.549:2	0/1:20,26:31:46:0.565:2	./.	./.
chr19	15996820	rs2074900	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:30:9:1.00:2	./.	0/1:35,38:31:73:0.521:2	./.	./.	./.	./.	0/1:36,35:32:71:0.493:2	0/1:25,26:30:51:0.510:2
chr19	16000500	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:33:90:0.044:2	./.	./.	./.
chr19	16003119	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr19	16006413	rs3093114	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,12:31:21:0.571:2	./.	./.	0/1:18,14:32:32:0.438:2	./.	./.	./.
chr19	16008257	rs3093106	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,42:28:100:0.420:2	./.	./.	0/1:68,41:30:109:0.376:2	./.	./.	./.
chr19	16008388	rs3093105	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,6:27:13:0.462:2	./.	./.	./.
chr19	16024662	rs1064796	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:29:62:1.00:2	0/1:0,29:29:29:1.00:2	0/1:0,11:29:11:1.00:2	0/1:28,31:29:59:0.525:2	0/1:0,79:29:80:1.00:2	./.	./.	0/1:45,65:29:110:0.591:2	0/1:41,36:27:77:0.468:2	0/1:42,35:29:77:0.455:2	0/1:37,33:29:70:0.471:2
chr19	16025176	rs1060463	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:32:65:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,5:31:5:1.00:2	0/1:52,40:32:92:0.435:2	0/1:0,69:31:69:1.00:2	./.	./.	./.	0/1:60,45:32:105:0.429:2	0/1:33,47:31:80:0.588:2	0/1:34,49:31:83:0.590:2
chr19	16034714	rs8104361	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,58:29:59:0.983:2	0/1:0,30:28:30:1.00:2	0/1:0,10:31:10:1.00:2	0/1:37,34:29:71:0.479:2	0/1:0,63:29:63:1.00:2	./.	./.	0/1:40,24:29:64:0.375:2	0/1:43,39:31:82:0.476:2	0/1:44,31:29:75:0.413:2	0/1:41,20:28:61:0.328:2
chr19	16040292	rs3765070	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,64:32:65:0.985:2	0/1:0,51:33:51:1.00:2	0/1:0,12:33:12:1.00:2	0/1:48,53:33:101:0.525:2	0/1:0,114:32:114:1.00:2	./.	./.	./.	0/1:69,41:33:110:0.373:2	0/1:33,33:32:66:0.500:2	0/1:49,47:32:96:0.490:2
chr19	16045141	rs2305801	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,18:32:43:0.419:2	0/1:10,16:32:26:0.615:2	0/1:0,8:31:8:1.00:2	0/1:34,29:32:63:0.460:2	0/1:0,35:31:35:1.00:2	./.	./.	0/1:26,19:32:45:0.422:2	0/1:16,17:31:33:0.515:2	0/1:21,16:30:37:0.432:2	0/1:20,14:31:34:0.412:2
chr19	16060021	rs16980821	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,24:31:44:0.545:2	./.	./.	./.	./.	0/1:108,83:33:191:0.435:2	./.	0/1:106,80:32:186:0.430:2	./.
chr19	16060110	rs78394835	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,11:17:134:0.082:2	./.
chr19	16060117	rs16980994	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,9:30:20:0.450:2	./.	./.	./.	./.	0/1:75,68:31:144:0.476:2	./.	0/1:70,70:31:140:0.500:2	./.
chr19	16060248	rs16980822	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:28:14:0.286:2	./.	./.	./.	./.	0/1:93,98:29:191:0.513:2	./.	0/1:97,91:29:188:0.484:2	./.
chr19	16060658	rs11880184	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,30:33:74:0.405:2	./.	0/1:25,25:33:50:0.500:2	./.
chr19	16060678	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:33:41:0.098:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	16060696	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:30:37:0.111:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	16197284	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:31:127:0.031:2	./.
chr19	16197294	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:31:143:0.028:2	./.
chr19	16212141	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:168,4:31:172:0.023:2	./.	./.	./.	./.	./.	./.
chr19	16238279	rs1043308	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:35,35:33:70:0.500:2	0/1:24,18:32:42:0.429:2	0/1:11,9:32:20:0.450:2	./.	0/1:105,53:32:158:0.335:2	./.	./.	0/1:85,61:31:146:0.418:2	./.	./.	0/1:2,97:32:99:0.980:2
chr19	16238895	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:33:91:0.044:2	./.	./.	./.
chr19	16259623	rs8103852	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,14:30:23:0.609:2	./.	./.	0/1:16,22:32:38:0.579:2	./.	./.	./.	./.
chr19	16265241	rs36088948	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,13:31:23:0.565:2	./.	./.	0/1:11,12:31:23:0.522:2	./.	./.	./.	./.
chr19	16275655	rs6512087	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,50:29:91:0.549:2	0/1:31,15:31:46:0.326:2	0/1:0,10:27:10:1.00:2	0/1:0,115:29:115:1.00:2	0/1:91,84:29:175:0.480:2	0/1:0,121:28:121:1.00:2	0/1:86,92:29:178:0.517:2	0/1:76,82:29:158:0.519:2	0/1:88,53:30:141:0.376:2	0/1:57,60:30:117:0.513:2	0/1:2,125:28:127:0.984:2
chr19	16301312	rs206231	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,51:30:121:0.421:2	0/1:32,33:28:65:0.508:2	0/1:0,18:29:18:1.00:2	0/1:2,125:29:127:0.984:2	0/1:98,47:29:145:0.324:2	0/1:85,56:28:141:0.397:2	0/1:82,41:28:123:0.333:2	0/1:91,75:28:166:0.452:2	0/1:76,54:29:130:0.415:2	0/1:70,65:29:135:0.481:2	0/1:1,98:28:99:0.990:2
chr19	16301773	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:31:55:0.073:2
chr19	16317235	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,56:29:111:0.505:2	./.	./.	./.	./.	./.
chr19	16339030	rs62116347	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,22:30:48:0.458:2	./.	./.	0/1:37,39:32:76:0.513:2	./.	./.	./.	./.
chr19	16339715	rs3752797	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,31:32:71:0.437:2	0/1:22,15:31:37:0.405:2	0/1:0,15:31:15:1.00:2	0/1:0,116:30:116:1.00:2	0/1:80,53:31:133:0.398:2	0/1:94,51:31:145:0.352:2	0/1:90,49:31:139:0.353:2	0/1:81,61:31:142:0.430:2	0/1:59,49:32:108:0.454:2	0/1:62,43:31:105:0.410:2	0/1:0,111:31:111:1.00:2
chr19	16503210	rs367867461	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,15:33:37:0.405:2	0/1:7,10:33:17:0.588:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	16528456	rs200246324	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,28:29:64:0.438:2	./.	./.	./.
chr19	16536013	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,3:31:22:0.136:2	./.	./.	./.	./.	./.	./.
chr19	16547778	rs33914440	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,39:30:79:0.494:2	./.	./.	./.	./.	./.	./.
chr19	16547809	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:33:117:0.034:2	./.	./.	./.	./.
chr19	16591464	rs9305079	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,23:32:45:0.511:2	0/1:17,14:32:31:0.452:2	0/1:0,12:31:12:1.00:2	0/1:28,35:32:63:0.556:2	0/1:27,18:31:45:0.400:2	0/1:0,51:32:51:1.00:2	0/1:37,26:32:63:0.413:2	0/1:0,65:32:65:1.00:2	./.	0/1:36,33:32:69:0.478:2	0/1:0,80:32:80:1.00:2
chr19	16593573	rs10403020	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,25:32:45:0.556:2	0/1:21,15:28:36:0.417:2	./.	0/1:23,26:32:49:0.531:2	./.	0/1:28,19:31:47:0.404:2	0/1:14,20:32:34:0.588:2	./.
chr19	16601194	rs3810198	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:66,43:31:109:0.394:2	0/1:30,26:32:56:0.464:2	0/1:0,21:31:21:1.00:2	0/1:67,48:31:115:0.417:2	0/1:59,34:31:93:0.366:2	0/1:0,111:30:111:1.00:2	0/1:45,37:31:82:0.451:2	0/1:0,131:31:131:1.00:2	./.	0/1:51,43:31:94:0.457:2	0/1:0,140:31:140:1.00:2
chr19	16611606	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,4:31:105:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr19	16611978	rs728116	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,13:30:26:0.500:2	0/1:6,5:31:11:0.455:2	./.	0/1:14,10:31:24:0.417:2	0/1:12,7:31:19:0.368:2	./.	./.	./.	0/1:13,9:30:22:0.409:2	0/1:9,8:31:17:0.471:2	./.
chr19	16612011	rs728117	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,12:29:23:0.522:2	0/1:6,5:31:11:0.455:2	./.	0/1:17,10:31:27:0.370:2	0/1:11,4:23:15:0.267:2	./.	./.	./.	0/1:19,4:31:23:0.174:2	0/1:8,8:30:16:0.500:2	./.
chr19	16614154	rs202132782	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,9:14:60:0.150:2	./.	0/1:40,6:20:46:0.130:2	./.	0/1:36,6:20:42:0.143:2	0/1:37,6:23:43:0.140:2
chr19	16620760	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:33:106:0.038:2	./.	./.	./.	./.
chr19	16625375	rs34208111	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,23:32:61:0.377:2	./.	./.	./.	./.	./.
chr19	16628062	rs368026978	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:33:151:0.026:2	./.	./.
chr19	16633950	rs1043481	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:28:9:1.00:2	0/1:0,43:27:43:1.00:2	0/1:0,62:27:62:1.00:2	0/1:0,72:27:72:1.00:2	0/1:0,50:27:50:1.00:2	0/1:0,95:27:95:1.00:2	0/1:44,30:28:75:0.405:2	0/1:0,77:27:77:1.00:2	0/1:0,49:26:49:1.00:2
chr19	16664679	rs117188970	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,55:29:119:0.462:2	./.	./.	./.	./.	0/1:68,62:31:130:0.477:2	./.	./.
chr19	16666101	rs2287869	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:29:10:1.00:2	0/1:66,63:30:130:0.488:2	0/1:67,67:28:134:0.500:2	0/1:2,117:29:120:0.983:2	0/1:0,152:28:152:1.00:2	0/1:3,148:29:152:0.980:2	./.	0/1:56,31:30:87:0.356:2	0/1:0,115:29:115:1.00:2
chr19	16682892	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.
chr19	16682955	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,3:34:20:0.150:2	./.	./.	./.	./.	./.	./.	./.
chr19	16687948	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:32:41:0.098:2	./.	./.	./.	./.	./.
chr19	16688458	rs145192786	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,26:29:54:0.491:2	./.	./.	./.	./.	./.	./.
chr19	16772142	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,4:32:83:0.048:2	./.	./.	./.	./.	./.	./.	./.
chr19	16790859	rs730120	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,30:31:52:0.577:2	0/1:8,6:31:14:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	16860087	rs61750949	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,4:25:39:0.103:2	./.	./.	0/1:38,9:23:47:0.191:2	0/1:32,12:26:44:0.273:2	0/1:37,5:26:42:0.119:2	0/1:49,7:22:56:0.125:2	0/1:56,10:21:67:0.152:2	./.	0/1:30,8:28:38:0.211:2	./.
chr19	16860105	rs706764	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:30:36:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,4:27:4:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,39:30:39:1.00:2	0/1:1,50:31:51:0.980:2	0/1:0,58:31:58:1.00:2	0/1:0,40:31:41:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,38:31:38:1.00:2
chr19	16870096	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,3:34:59:0.051:2	./.	./.
chr19	16872794	rs61995711	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,51:31:105:0.486:2	0/1:76,43:31:119:0.361:2	./.	./.	./.	./.
chr19	16872940	rs773852	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,35:32:62:0.565:2	0/1:23,12:32:35:0.343:2	0/1:6,4:32:10:0.400:2	0/1:51,20:31:71:0.282:2	./.	0/1:34,43:30:77:0.558:2	0/1:0,70:31:70:1.00:2	0/1:56,35:30:91:0.385:2	./.	./.	./.
chr19	16890172	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:33:178:0.022:2	./.	./.	./.	./.
chr19	16899838	rs2608737	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:32:75:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,82:31:82:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,90:31:90:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,117:31:117:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,97:32:97:1.00:2
chr19	16899865	rs2608738	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,27:31:57:0.474:2	./.	./.	./.	./.	./.	./.
chr19	16908687	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,37:32:86:0.430:2	./.	./.	./.	./.	./.	./.	./.
chr19	16926067	rs11671361	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,7:32:26:0.269:2	./.	./.	./.	./.	./.	0/1:17,15:32:32:0.469:2
chr19	16973724	rs143287291	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,78:31:141:0.553:2	./.	./.	./.	./.	./.	./.	./.
chr19	16976286	rs773911	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:32:79:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,16:34:16:1.00:2	0/1:0,136:32:136:1.00:2	0/1:0,114:32:114:1.00:2	0/1:0,135:32:136:1.00:2	0/1:0,146:32:146:1.00:2	0/1:0,145:32:145:1.00:2	0/1:2,123:32:125:0.984:2	0/1:0,102:32:102:1.00:2	0/1:0,97:32:98:1.00:2
chr19	16976289	rs2303091	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,32:31:79:0.405:2	0/1:25,17:31:42:0.405:2	0/1:9,8:30:17:0.471:2	0/1:78,64:33:142:0.451:2	0/1:76,46:32:122:0.377:2	./.	0/1:83,63:33:147:0.432:2	0/1:80,65:32:145:0.448:2	./.	./.	./.
chr19	17000632	rs773902	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:31:8:1.00:2	0/1:0,2:33:2:1.00:2	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.
chr19	17004049	rs1054533	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,12:29:23:0.522:2	0/1:10,3:30:13:0.231:2	./.	./.	0/1:11,3:31:14:0.214:2	./.	./.
chr19	17008578	rs2608732	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,17:30:38:0.447:2	0/1:4,9:30:13:0.692:2	0/1:14,8:31:22:0.364:2	0/1:66,22:29:88:0.250:2	0/1:0,85:29:85:1.00:2	0/1:40,49:29:89:0.551:2	0/1:57,36:29:93:0.387:2	./.	0/1:55,40:29:95:0.421:2	./.	0/1:36,31:28:67:0.463:2
chr19	17015111	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:33:116:0.034:2	./.	./.	./.
chr19	17017878	rs56408444	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,34:32:70:0.486:2	0/1:21,32:31:53:0.604:2	./.	0/1:2,84:31:86:0.977:2	0/1:79,82:31:162:0.509:2	./.	./.	0/1:69,67:30:136:0.493:2	0/1:45,35:32:80:0.438:2	0/1:56,34:31:90:0.378:2	0/1:35,39:32:74:0.527:2
chr19	17017901	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,4:30:69:0.058:2	./.	./.	./.	./.	./.	./.	./.
chr19	17025292	rs706761	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,34:31:57:0.596:2	0/1:22,20:32:42:0.476:2	0/1:0,7:32:7:1.00:2	0/1:33,27:30:60:0.450:2	./.	0/1:49,44:31:93:0.473:2	./.	0/1:67,64:30:131:0.489:2	./.	0/1:40,27:31:67:0.403:2	0/1:27,42:32:69:0.609:2
chr19	17025311	rs45485597	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,26:30:51:0.510:2	./.	./.	./.	0/1:1,98:30:99:0.990:2	./.	./.	./.
chr19	17085958	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:30:97:0.041:2	./.	./.	./.
chr19	17086920	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:187,5:30:192:0.026:2	./.	0/1:179,9:29:188:0.048:2	./.	0/1:133,4:31:137:0.029:2	./.	./.
chr19	17088299	rs1824152	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,12:27:12:1.00:2	0/1:10,9:28:19:0.474:2	0/1:10,8:26:18:0.444:2	./.	./.
chr19	17088319	rs3745335	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,7:29:7:1.00:2	0/1:7,8:29:15:0.533:2	0/1:9,6:31:15:0.400:2	./.	./.
chr19	17091368	rs8103646	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,43:33:44:0.977:2	0/1:43,35:33:78:0.449:2	0/1:39,29:33:68:0.426:2	./.	./.
chr19	17100516	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:30:62:0.065:2	./.	./.
chr19	17100550	rs61744414	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,16:30:44:0.364:2	./.	./.
chr19	17100552	rs1973093	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,25:30:43:0.581:2	0/1:13,10:32:23:0.435:2	0/1:4,5:30:9:0.556:2	0/1:0,52:29:52:1.00:2	0/1:0,40:30:40:1.00:2	0/1:0,64:29:64:1.00:2	0/1:33,26:29:59:0.441:2	0/1:36,45:29:81:0.556:2	0/1:0,43:30:43:1.00:2	./.	0/1:28,35:29:63:0.556:2
chr19	17104288	rs373932211	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,5:31:196:0.026:2	0/1:191,6:31:197:0.030:2	0/1:184,7:33:191:0.037:2	./.	./.
chr19	17108022	rs62125985	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:122,65:31:187:0.348:2	0/1:109,65:31:175:0.374:2	./.	./.	./.	0/1:115,79:31:194:0.407:2	./.	./.
chr19	17108052	rs62622858	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,6:27:23:0.261:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	17108053	rs12974937	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,11:30:23:0.478:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	17108094	rs143454938	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,5:32:23:0.217:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	17108098	rs112680414	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,5:32:24:0.208:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	17108135	rs3745340	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,116:32:124:0.935:2	0/1:10,123:32:133:0.925:2	0/1:77,76:31:154:0.497:2	0/1:11,129:32:140:0.921:2	0/1:74,59:32:133:0.444:2	0/1:17,127:33:144:0.882:2	./.	0/1:47,37:32:84:0.440:2
chr19	17108136	rs61744196	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,5:31:16:0.313:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	17111297	rs4808551	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,15:29:44:0.341:2	0/1:14,15:28:30:0.517:2	0/1:0,11:27:11:1.00:2	0/1:0,55:28:55:1.00:2	0/1:0,65:28:65:1.00:2	0/1:0,71:28:71:1.00:2	0/1:0,54:28:54:1.00:2	0/1:0,80:29:80:1.00:2	0/1:0,51:29:51:1.00:2	0/1:0,45:29:46:1.00:2	0/1:27,22:30:49:0.449:2
chr19	17113147	rs3745345	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	17115168	rs62126004	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,42:32:78:0.538:2	./.	./.	./.	./.	./.	./.
chr19	17160719	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,30:29:60:0.500:2	./.	./.	./.
chr19	17163661	rs2305758	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,8:33:22:0.364:2	./.	./.	./.	0/1:6,165:32:171:0.965:2	./.	0/1:101,61:33:162:0.377:2	./.	./.
chr19	17170885	rs1130222	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,11:33:22:0.500:2	./.	./.	0/1:22,11:32:33:0.333:2	0/1:19,13:31:32:0.406:2	0/1:14,17:31:31:0.548:2	./.	0/1:0,46:32:46:1.00:2	./.	0/1:1,27:32:28:0.964:2	./.
chr19	17212992	rs3745349	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,42:32:44:0.955:2	./.	./.	./.	./.
chr19	17273169	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	17273893	rs7256689	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,28:32:55:0.509:2	0/1:12,13:31:25:0.520:2	./.	0/1:47,42:32:89:0.472:2	0/1:1,76:31:77:0.987:2	0/1:48,46:31:94:0.489:2	0/1:58,45:32:103:0.437:2	0/1:37,36:31:73:0.493:2	0/1:30,51:32:81:0.630:2	./.	./.
chr19	17283657	rs2279006	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,19:31:38:0.500:2	./.	0/1:3,5:30:8:0.625:2	./.	./.	./.	./.
chr19	17303774	rs1545620	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:7,3:26:10:0.300:2	./.	0/1:5,3:27:8:0.375:2	0/1:12,11:26:23:0.478:2	0/1:15,9:29:24:0.375:2	./.	./.	./.	./.	./.
chr19	17305440	rs1064305	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,8:28:23:0.348:2	0/1:11,11:27:22:0.500:2	./.	0/1:28,11:28:39:0.282:2	0/1:25,24:27:49:0.490:2	0/1:27,24:27:51:0.471:2	0/1:27,11:28:38:0.289:2	0/1:22,22:29:45:0.500:2	0/1:31,26:30:57:0.456:2	0/1:19,15:29:34:0.441:2	./.
chr19	17305781	rs45541337	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,11:32:42:0.262:2	./.	./.	./.	./.
chr19	17306031	rs2279003	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:30:5:1.00:2	0/1:0,3:31:3:1.00:2	./.	./.	0/1:0,2:31:2:1.00:2	0/1:4,3:32:7:0.429:2	0/1:6,3:31:9:0.333:2	./.	./.	0/1:0,5:31:5:1.00:2	./.
chr19	17311226	rs117099942	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,9:33:46:0.196:2	./.	./.
chr19	17312992	rs2305765	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,47:31:47:1.00:2	0/1:0,22:32:22:1.00:2	./.	0/1:31,31:31:62:0.500:2	0/1:29,26:30:55:0.473:2	0/1:42,30:31:72:0.417:2	./.	0/1:39,38:31:77:0.494:2	0/1:25,30:32:55:0.545:2	0/1:21,35:33:56:0.625:2	./.
chr19	17316782	rs7248508	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,9:29:9:1.00:2	0/1:2,10:32:12:0.833:2	./.	0/1:1,5:30:6:0.833:2	0/1:10,6:32:16:0.375:2	0/1:4,4:30:8:0.500:2	./.	./.	0/1:5,6:35:11:0.545:2	0/1:4,7:33:11:0.636:2	./.
chr19	17317955	rs8110964	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,85:28:87:0.977:2	0/1:0,55:28:55:1.00:2	./.	0/1:0,153:28:153:1.00:2	0/1:109,74:28:183:0.404:2	0/1:118,66:29:184:0.359:2	./.	0/1:105,80:28:186:0.432:2	0/1:90,70:28:165:0.438:2	0/1:97,53:29:151:0.353:2	./.
chr19	17318012	rs79829421	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,11:29:27:0.407:2	./.	./.	./.	0/1:74,107:32:181:0.591:2	./.	./.	./.	./.
chr19	17318018	rs17535005	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,96:30:192:0.500:2	./.	./.	./.	./.	0/1:75,71:31:146:0.486:2	./.
chr19	17322800	rs117297085	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,7:33:13:0.538:2	./.	./.	./.	./.
chr19	17326586	rs141487581	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,10:29:20:0.500:2	./.
chr19	17330060	rs414528	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:29:54:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,72:29:72:1.00:2	0/1:1,125:28:126:0.992:2	0/1:0,64:28:64:1.00:2	0/1:1,147:28:148:0.993:2	0/1:0,94:29:94:1.00:2	0/1:0,98:30:98:1.00:2	0/1:0,62:28:63:1.00:2	0/1:0,74:28:74:1.00:2
chr19	17337555	rs3745163	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr19	17337871	rs891204	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,8:30:18:0.444:2	./.	./.	0/1:15,11:32:26:0.423:2	./.
chr19	17337882	rs891203	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,8:31:21:0.381:2	./.	./.	0/1:17,15:32:32:0.469:2	./.
chr19	17337928	rs1045201	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,23:31:43:0.535:2	0/1:18,13:32:31:0.419:2	./.	./.	./.	./.	./.	./.	0/1:45,19:31:64:0.297:2	./.	./.
chr19	17338703	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,4:32:104:0.038:2	./.	./.	./.	./.	./.	./.
chr19	17339112	rs14129	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,34:31:94:0.362:2	./.	./.	0/1:35,40:32:75:0.533:2	./.
chr19	17351535	rs2288539	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,63:31:149:0.423:2	./.	./.	0/1:43,33:30:76:0.434:2	./.
chr19	17361064	rs10415471	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,21:28:42:0.500:2	./.	./.	./.	./.	./.	./.
chr19	17362489	rs142828605	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:29:10:0.600:2	./.	./.	./.	0/1:29,22:29:51:0.431:2	./.	./.	./.	./.
chr19	17366278	rs4430871	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,28:28:28:1.00:2	0/1:0,15:28:15:1.00:2	./.	0/1:0,36:27:36:1.00:2	0/1:3,35:28:38:0.921:2	0/1:24,20:28:44:0.455:2	./.	0/1:16,22:27:38:0.579:2	0/1:6,10:26:16:0.625:2	0/1:10,25:27:35:0.714:2	./.
chr19	17366313	rs12459398	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,13:32:19:0.684:2	0/1:6,9:32:15:0.600:2	./.	0/1:4,17:31:21:0.810:2	0/1:6,10:32:16:0.625:2	0/1:9,6:28:15:0.400:2	./.	0/1:7,12:31:19:0.632:2	./.	./.	./.
chr19	17367354	rs141680124	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,16:32:48:0.333:2	0/1:12,18:32:30:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	17367435	rs9676419	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,27:33:45:0.600:2	0/1:13,12:31:25:0.480:2	./.	0/1:35,23:32:58:0.397:2	0/1:43,20:32:63:0.317:2	./.	./.	0/1:38,27:32:65:0.415:2	./.	./.	./.
chr19	17370190	rs11880383	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,18:33:44:0.409:2	0/1:11,19:32:30:0.633:2	./.	0/1:33,37:32:70:0.529:2	0/1:55,53:32:108:0.491:2	./.	./.	0/1:47,59:32:106:0.557:2	./.	./.	./.
chr19	17389704	rs8170	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,27:31:59:0.458:2	0/1:45,22:32:67:0.328:2	0/1:40,38:30:78:0.487:2	./.	./.	./.	./.	./.
chr19	17392894	rs8100241	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:30:2:1.00:2	0/1:1,5:31:6:0.833:2	./.	0/1:0,5:31:5:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,2:32:2:1.00:2	./.	0/1:0,5:30:5:1.00:2	0/1:0,6:31:6:1.00:2
chr19	17393015	rs1864116	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	0/1:0,3:29:3:1.00:2	./.	./.	0/1:0,2:31:2:1.00:2	0/1:0,2:30:2:1.00:2	./.
chr19	17393504	rs1864113	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr19	17394064	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:32:41:0.098:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	17394124	rs2363956	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:26,20:32:46:0.435:2	0/1:31,25:31:56:0.446:2	0/1:32,17:32:49:0.347:2	0/1:0,53:32:53:1.00:2	0/1:0,43:31:43:1.00:2	./.	0/1:1,34:32:35:0.971:2	0/1:1,32:32:33:0.970:2
chr19	17394504	rs891017	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,31:32:31:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,41:33:41:1.00:2	0/1:0,23:31:23:1.00:2	0/1:15,12:33:27:0.444:2	0/1:0,22:33:22:1.00:2	0/1:1,23:32:24:0.958:2
chr19	17395003	rs11086065	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:31:7:1.00:2	0/1:0,123:30:123:1.00:2	0/1:3,115:30:118:0.975:2	0/1:0,111:30:111:1.00:2	0/1:1,145:30:146:0.993:2	0/1:4,123:30:127:0.969:2	0/1:86,48:31:134:0.358:2	0/1:0,102:30:102:1.00:2	0/1:0,101:30:101:1.00:2
chr19	17395055	rs11882562	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:28:2:1.00:2	0/1:0,63:30:63:1.00:2	0/1:2,69:30:71:0.972:2	0/1:0,55:29:55:1.00:2	0/1:1,93:29:94:0.989:2	0/1:2,68:29:70:0.971:2	0/1:46,29:31:75:0.387:2	0/1:0,61:30:61:1.00:2	0/1:0,55:29:55:1.00:2
chr19	17396549	rs751599	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,21:30:21:1.00:2	0/1:2,181:30:183:0.989:2	0/1:2,181:30:183:0.989:2	0/1:1,175:29:176:0.994:2	0/1:3,175:30:178:0.983:2	0/1:0,184:30:184:1.00:2	0/1:114,75:30:189:0.397:2	0/1:0,135:30:135:1.00:2	0/1:0,166:29:166:1.00:2
chr19	17396577	rs145927575	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,8:32:21:0.381:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	17397244	rs10425939	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,42:31:75:0.560:2	0/1:42,53:30:95:0.558:2	0/1:38,39:29:77:0.506:2	./.	./.	./.	./.	./.
chr19	17412218	rs3745186	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,19:31:27:0.704:2	0/1:6,6:33:12:0.500:2	./.	./.	0/1:12,24:33:36:0.667:2	./.	0/1:14,5:29:19:0.263:2	./.
chr19	17412366	rs11086066	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,39:32:41:0.951:2	./.	./.	0/1:24,17:33:41:0.415:2	./.
chr19	17412399	rs11086067	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,27:31:29:0.931:2	./.	./.	0/1:12,12:29:24:0.500:2	./.
chr19	17417080	rs11548548	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,6:32:26:0.231:2	./.	./.
chr19	17435851	rs755124	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,48:32:114:0.421:2	./.	./.
chr19	17435884	rs755123	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,10:32:24:0.417:2	0/1:0,122:30:123:1.00:2	0/1:0,163:30:163:1.00:2	0/1:82,74:30:156:0.474:2	0/1:0,146:30:147:1.00:2	0/1:110,80:30:190:0.421:2	0/1:110,76:31:186:0.409:2	0/1:0,89:30:89:1.00:2	./.
chr19	17435887	rs56286266	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,11:30:26:0.423:2	./.	./.	./.	0/1:0,147:30:147:1.00:2	./.	./.	0/1:54,40:31:94:0.426:2	./.
chr19	17438642	rs8102944	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,15:30:27:0.556:2	0/1:2,169:29:171:0.988:2	0/1:2,174:29:176:0.989:2	0/1:94,81:29:175:0.463:2	0/1:2,179:29:181:0.989:2	0/1:119,62:29:181:0.343:2	0/1:103,80:30:183:0.437:2	0/1:0,146:29:146:1.00:2	./.
chr19	17439034	rs3745191	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,35:32:66:0.530:2	0/1:34,24:31:58:0.414:2	./.	./.	0/1:49,22:32:71:0.310:2	./.	0/1:24,13:33:37:0.351:2	./.
chr19	17439771	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,6:12:10:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	17441909	rs61734355	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,19:30:37:0.514:2	./.	./.
chr19	17448961	rs1864112	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.
chr19	17450016	rs3810206	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,36:27:36:1.00:2	0/1:0,27:25:27:1.00:2	0/1:14,10:28:24:0.417:2	0/1:0,18:25:18:1.00:2	0/1:25,11:26:36:0.306:2	0/1:16,5:27:21:0.238:2	0/1:0,19:22:19:1.00:2	./.
chr19	17463214	rs62128111	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:27:3:1.00:2	./.	./.	0/1:14,12:28:26:0.462:2	./.	./.	./.	0/1:11,9:30:20:0.450:2	0/1:11,3:29:14:0.214:2
chr19	17476994	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:34:165:0.024:2	./.
chr19	17534351	rs113697726	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:29:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	0/1:33,20:27:53:0.377:2
chr19	17628587	rs6743	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:30:46:1.00:2	0/1:0,31:30:31:1.00:2	0/1:7,5:31:12:0.417:2	0/1:48,40:30:88:0.455:2	0/1:0,122:29:122:1.00:2	0/1:0,105:29:105:1.00:2	0/1:4,122:30:126:0.968:2	0/1:0,85:28:85:1.00:2	0/1:56,42:30:98:0.429:2	0/1:0,81:30:81:1.00:2	0/1:0,71:29:71:1.00:2
chr19	17631821	rs148164602	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,20:31:60:0.333:2	./.	./.
chr19	17638121	rs138735905	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:31,29:30:61:0.483:2	0/1:17,12:29:29:0.414:2	./.	./.	0/1:31,53:30:84:0.631:2	./.	./.	./.	./.	./.	./.
chr19	17643088	rs140354498	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,45:31:94:0.479:2	./.	./.
chr19	17648350	rs8107859	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,11:34:11:1.00:2	0/1:0,10:32:10:1.00:2	./.	0/1:0,13:33:13:1.00:2	0/1:1,12:30:13:0.923:2	0/1:0,14:33:14:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,10:34:10:1.00:2	0/1:0,14:32:15:1.00:2	0/1:0,7:31:7:1.00:2
chr19	17650053	rs74546231	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,10:26:29:0.345:2	./.	0/1:11,10:25:21:0.476:2	0/1:7,10:29:17:0.588:2	./.	./.	0/1:11,6:30:17:0.353:2	./.
chr19	17651370	rs11878663	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,8:26:8:1.00:2	0/1:0,10:30:10:1.00:2	./.	0/1:8,7:25:15:0.467:2	0/1:0,6:27:6:1.00:2	./.	./.	0/1:0,5:28:5:1.00:2	0/1:0,3:31:3:1.00:2	./.	./.
chr19	17653083	rs143233543	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:32:88:0.045:2	./.	./.	./.	./.
chr19	17654181	rs45532635	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,48:31:105:0.457:2	./.	./.
chr19	17660300	rs11666267	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,23:33:23:1.00:2	0/1:0,11:33:11:1.00:2	./.	0/1:11,14:33:25:0.560:2	0/1:0,15:32:15:1.00:2	./.	0/1:24,17:33:41:0.415:2	0/1:0,47:33:47:1.00:2	0/1:16,24:34:40:0.600:2	0/1:12,14:33:26:0.538:2	0/1:0,45:32:45:1.00:2
chr19	17683336	rs149400191	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,35:30:86:0.407:2	0/1:35,19:32:54:0.352:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	17716896	rs3746198	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,24:32:42:0.571:2	./.	0/1:5,7:31:12:0.583:2	./.	./.	./.	./.
chr19	17728572	rs56174023	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:41,22:31:63:0.349:2	0/1:21,26:31:47:0.553:2	./.	0/1:73,46:31:119:0.387:2	0/1:81,68:31:149:0.456:2	0/1:65,56:31:121:0.463:2	./.	./.	./.	0/1:43,54:31:97:0.557:2	./.
chr19	17729787	rs56257446	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,25:33:48:0.521:2	0/1:11,12:33:23:0.522:2	./.	0/1:27,22:33:49:0.449:2	0/1:20,35:32:55:0.636:2	0/1:0,41:32:41:1.00:2	./.	./.	./.	0/1:0,46:33:46:1.00:2	./.
chr19	17737486	rs113693450	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,42:31:91:0.462:2	./.	./.	0/1:25,25:31:50:0.500:2
chr19	17740115	rs61753902	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,18:32:52:0.346:2	./.	./.	0/1:28,20:29:48:0.417:2
chr19	17741047	rs10413821	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:33:5:1.00:2	./.	./.	0/1:40,43:32:83:0.518:2	0/1:48,42:33:90:0.467:2	0/1:0,81:32:81:1.00:2	./.	0/1:28,40:32:68:0.588:2	0/1:28,31:33:60:0.525:2
chr19	17743622	rs75595663	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:77,70:32:147:0.476:2	0/1:32,29:31:61:0.475:2	./.	./.	0/1:109,89:31:198:0.449:2	./.	./.	0/1:115,80:31:196:0.410:2	./.	0/1:77,63:31:140:0.450:2	./.
chr19	17746940	rs77267738	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,36:31:118:0.305:2	./.	./.	./.	./.	./.	./.
chr19	17746947	rs4239634	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,93:32:93:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,21:32:21:1.00:2	0/1:1,134:32:135:0.993:2	0/1:0,106:32:106:1.00:2	0/1:0,116:32:116:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,107:32:107:1.00:2	0/1:0,107:32:107:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,123:31:123:1.00:2
chr19	17759289	rs73922174	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,20:33:42:0.476:2	./.	./.	./.	./.	./.	./.	./.
chr19	17766900	rs34752754	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,14:29:14:1.00:2	0/1:47,39:29:86:0.453:2	0/1:88,74:29:162:0.457:2	0/1:65,34:28:99:0.343:2	./.	0/1:0,102:29:103:1.00:2	0/1:53,58:29:111:0.523:2	0/1:0,73:30:74:1.00:2	0/1:43,39:30:82:0.476:2
chr19	17777508	rs9305092	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,26:31:73:0.361:2	0/1:27,18:31:45:0.400:2	0/1:0,12:31:12:1.00:2	0/1:51,34:31:85:0.400:2	0/1:56,24:30:80:0.300:2	0/1:0,69:30:69:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,83:31:83:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,73:31:73:1.00:2
chr19	17786792	rs7251241	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:32:11:0.545:2	./.	./.	./.	./.	./.	./.	0/1:0,72:31:72:1.00:2	0/1:0,88:33:88:1.00:2
chr19	17837090	rs12975100	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:31:8:0.750:2	./.	./.	./.	./.	0/1:2,4:33:6:0.667:2	./.	./.
chr19	17837364	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr19	17837981	rs7253548	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,2:31:2:1.00:2	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr19	17844229	rs114901293	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,17:32:45:0.378:2	./.	./.
chr19	17885270	rs2287859	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:15,9:31:24:0.375:2	0/1:5,8:24:13:0.615:2	0/1:0,7:29:7:1.00:2	./.	./.	0/1:0,32:27:32:1.00:2	./.	0/1:2,46:29:48:0.958:2	0/1:17,16:30:33:0.485:2	0/1:25,7:30:32:0.219:2	./.
chr19	17885880	rs2287855	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,40:33:68:0.588:2	./.	./.	0/1:21,33:32:54:0.611:2	./.	./.	./.	0/1:0,65:33:65:1.00:2
chr19	17886940	rs2287854	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:21,19:30:40:0.475:2	0/1:11,14:31:25:0.560:2	0/1:0,3:31:3:1.00:2	./.	./.	0/1:0,43:30:43:1.00:2	./.	0/1:0,38:30:38:1.00:2	0/1:13,21:32:34:0.618:2	0/1:18,17:29:35:0.486:2	./.
chr19	17887024	rs2287853	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,119:31:119:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,178:31:178:1.00:2	0/1:1,183:31:184:0.995:2	0/1:0,180:31:181:1.00:2	0/1:4,178:31:182:0.978:2	0/1:0,186:31:186:1.00:2	0/1:0,176:32:176:1.00:2	0/1:77,81:31:158:0.513:2	0/1:0,163:31:163:1.00:2
chr19	17889614	rs376363100	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr19	17892537	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,15:32:30:0.500:2	./.	./.
chr19	17892591	rs2042298	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:30:49:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,70:30:70:1.00:2	0/1:0,62:29:62:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,67:30:67:1.00:2	0/1:0,86:29:86:1.00:2	0/1:0,50:30:50:1.00:2	0/1:31,26:31:57:0.456:2	0/1:1,45:30:46:0.978:2
chr19	17919024	rs2240813	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,6:31:14:0.429:2	0/1:9,3:29:12:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	17922666	rs77134098	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,26:31:69:0.377:2	./.	./.	./.	./.	./.
chr19	17922795	rs36686	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,16:29:17:1.00:2	0/1:0,11:30:11:1.00:2	./.	0/1:12,19:28:31:0.613:2	0/1:11,6:30:17:0.353:2	0/1:14,23:30:37:0.622:2	0/1:2,32:30:34:0.941:2	0/1:18,8:30:26:0.308:2	./.	0/1:1,14:30:15:0.933:2	0/1:0,29:29:29:1.00:2
chr19	17932138	rs6523	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	0/1:0,2:35:2:1.00:2
chr19	17943383	rs2230589	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,30:30:73:0.411:2	./.	./.	./.
chr19	17948796	rs201972084	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:31:151:0.027:2	./.	./.	./.	./.
chr19	17954643	rs201067961	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,8:18:104:0.077:2	./.
chr19	17983321	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,4:27:33:0.121:2	./.
chr19	17988796	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:32:63:0.063:2
chr19	17999260	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:31:67:0.060:2	./.	./.	./.	./.	./.
chr19	18047283	rs4808722	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,34:33:74:0.459:2	0/1:56,38:32:94:0.404:2	0/1:41,39:33:80:0.488:2	0/1:40,30:31:70:0.429:2	0/1:0,73:32:73:1.00:2	0/1:43,45:33:88:0.511:2	0/1:1,44:32:45:0.978:2	0/1:28,11:32:39:0.282:2
chr19	18092625	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:30:43:0.093:2	./.	./.	./.	./.	./.
chr19	18112361	rs113540008	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.
chr19	18121154	rs17852059	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,16:33:37:0.432:2	./.	./.	./.	./.	./.
chr19	18121466	rs8100681	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,12:30:27:0.444:2	./.	./.	./.	./.	./.
chr19	18123738	rs7259041	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,23:32:42:0.548:2	0/1:26,18:32:44:0.409:2	0/1:13,20:31:33:0.606:2	0/1:35,20:32:55:0.364:2	0/1:33,19:34:52:0.365:2	./.	0/1:24,31:32:55:0.564:2
chr19	18170384	rs3746190	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,55:32:106:0.519:2	0/1:64,70:32:134:0.522:2	0/1:58,62:32:120:0.517:2	0/1:60,52:32:112:0.464:2	0/1:91,66:32:157:0.420:2	0/1:0,111:33:111:1.00:2	0/1:1,110:33:111:0.991:2	./.
chr19	18180413	rs401502	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:27,13:30:40:0.325:2	0/1:12,9:29:21:0.429:2	0/1:0,4:30:4:1.00:2	./.	./.	0/1:45,18:28:63:0.286:2	./.	./.	./.	./.	0/1:20,17:28:37:0.459:2
chr19	18180447	rs61734350	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,41:31:88:0.466:2	./.	./.	./.
chr19	18180451	rs375947	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:29,22:29:51:0.431:2	0/1:11,16:29:27:0.593:2	0/1:0,5:30:5:1.00:2	./.	./.	0/1:58,29:28:87:0.333:2	./.	./.	./.	./.	0/1:24,25:28:50:0.510:2
chr19	18186575	rs17852635	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:33,19:32:52:0.365:2	0/1:21,14:32:35:0.400:2	0/1:0,9:30:9:1.00:2	./.	./.	0/1:17,32:32:49:0.653:2	./.	./.	./.	./.	0/1:30,26:32:57:0.464:2
chr19	18186618	rs11575934	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:28,21:29:49:0.429:2	0/1:23,10:28:33:0.303:2	0/1:0,8:30:8:1.00:2	./.	./.	0/1:15,33:30:48:0.688:2	./.	./.	./.	./.	0/1:27,26:28:53:0.491:2
chr19	18188408	rs11575926	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,34:31:72:0.472:2	./.	./.	./.	./.	./.
chr19	18191664	rs11086087	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:7,17:31:24:0.708:2	0/1:8,12:32:20:0.600:2	0/1:0,6:32:6:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:31,17:31:48:0.354:2
chr19	18197635	rs436857	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,28:31:72:0.389:2	./.	./.	./.	./.	./.
chr19	18218444	rs62123561	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,33:32:33:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,9:33:9:1.00:2	./.	0/1:44,22:32:66:0.333:2	0/1:47,33:31:80:0.413:2	./.	./.	./.	./.	./.
chr19	18234441	rs740691	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,13:32:27:0.481:2	0/1:11,14:31:25:0.560:2	./.	0/1:0,32:31:32:1.00:2	0/1:29,19:32:48:0.396:2	./.	0/1:33,21:32:54:0.389:2	0/1:35,25:32:60:0.417:2	0/1:0,41:32:41:1.00:2	0/1:0,35:32:35:1.00:2	0/1:19,24:32:43:0.558:2
chr19	18245512	rs2270623	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,34:31:62:0.548:2	0/1:22,17:32:39:0.436:2	./.	0/1:0,72:31:72:1.00:2	0/1:75,35:30:110:0.318:2	./.	0/1:59,43:30:102:0.422:2	0/1:69,38:31:107:0.355:2	0/1:0,53:32:53:1.00:2	0/1:0,71:31:71:1.00:2	0/1:41,34:32:75:0.453:2
chr19	18248146	rs541225	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:28:29:1.00:2	0/1:0,16:28:16:1.00:2	0/1:0,4:28:4:1.00:2	0/1:0,47:28:47:1.00:2	0/1:0,51:27:51:1.00:2	0/1:21,23:28:44:0.523:2	0/1:24,22:25:46:0.478:2	0/1:34,20:28:54:0.370:2	0/1:0,46:29:46:1.00:2	0/1:0,34:28:34:1.00:2	0/1:29,19:27:48:0.396:2
chr19	18255359	rs8108738	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,6:31:14:0.429:2	0/1:4,7:32:11:0.636:2	./.	0/1:0,8:30:8:1.00:2	0/1:12,6:30:18:0.333:2	./.	0/1:1,5:32:6:0.833:2	./.	0/1:0,20:33:20:1.00:2	0/1:0,7:31:7:1.00:2	./.
chr19	18257750	rs2072490	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:42,41:30:83:0.494:2	0/1:18,22:30:40:0.550:2	./.	0/1:0,119:30:120:1.00:2	0/1:55,55:30:110:0.500:2	./.	0/1:62,45:31:107:0.421:2	0/1:67,64:30:131:0.489:2	0/1:0,133:31:133:1.00:2	0/1:0,113:30:113:1.00:2	0/1:46,44:30:90:0.489:2
chr19	18266849	rs201370957	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,13:32:19:0.684:2	./.	./.	./.
chr19	18273013	rs28730848	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,16:30:40:0.400:2	./.	./.	./.	./.	./.	./.	./.
chr19	18273047	rs1011320	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:31:34:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,7:32:7:1.00:2	0/1:1,34:32:35:0.971:2	0/1:0,58:31:58:1.00:2	0/1:35,25:32:60:0.417:2	0/1:28,23:32:51:0.451:2	0/1:44,27:32:71:0.380:2	0/1:0,62:32:62:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,47:31:48:1.00:2
chr19	18274155	rs148515229	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,9:31:119:0.076:2	./.	./.	./.	./.	./.
chr19	18279638	rs273269	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,36:29:70:0.514:2	0/1:18,26:29:44:0.591:2	0/1:0,15:30:15:1.00:2	0/1:0,105:29:105:1.00:2	0/1:0,160:29:160:1.00:2	0/1:107,57:29:164:0.348:2	0/1:91,71:28:162:0.438:2	0/1:107,67:29:174:0.385:2	0/1:0,105:30:105:1.00:2	0/1:0,84:28:84:1.00:2	0/1:0,67:28:67:1.00:2
chr19	18284651	rs11554158	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:2,22:31:24:0.917:2	0/1:0,16:32:16:1.00:2	0/1:0,3:32:3:1.00:2	./.	./.	./.	0/1:17,24:31:41:0.585:2	0/1:18,26:31:44:0.591:2	./.	0/1:12,15:31:27:0.556:2	./.
chr19	18284763	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:32:44:0.091:2	./.
chr19	18285944	rs11554159	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,61:31:124:0.492:2	0/1:60,60:31:120:0.500:2	./.	./.	./.	./.	0/1:53,66:32:119:0.555:2
chr19	18288069	rs7125	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,107:29:109:0.982:2	0/1:1,73:29:74:0.986:2	0/1:0,28:30:28:1.00:2	./.	0/1:107,80:30:187:0.428:2	0/1:104,83:29:187:0.444:2	0/1:104,90:29:194:0.464:2	0/1:114,72:29:186:0.387:2	./.	0/1:63,67:30:130:0.515:2	0/1:87,73:30:160:0.456:2
chr19	18288087	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:32:178:0.022:2	./.	./.	./.	./.	./.
chr19	18304700	rs874628	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,79:29:176:0.449:2	0/1:65,46:29:111:0.414:2	./.	./.	./.	./.	0/1:45,54:29:99:0.545:2
chr19	18305578	rs16982263	G	C,T	.	PASS	AC=9,1;AF=0.300,0.033;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0/1:32:16:1.00:2	0/1:33:12:1.00:2	0/1:32:5:1.00:2	0/1:33:50:0.620:2	0/1:32:47:0.447:2	0/1:32:51:0.412:2	./.	0/2:32:49:0.469:2	0/1:33:28:1.00:2	0/1:32:31:0.516:2	0/1:31:37:0.405:2
chr19	18305824	rs2271881	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:27,21:31:48:0.438:2	0/1:13,16:32:29:0.552:2	./.	./.	0/1:112,87:31:199:0.437:2	0/1:63,48:31:111:0.432:2	0/1:89,55:32:144:0.382:2	0/1:77,68:32:145:0.469:2	./.	./.	0/1:38,44:32:82:0.537:2
chr19	18306867	rs141015940	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,40:31:92:0.435:2	./.	./.	./.	./.
chr19	18309580	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:31:115:0.035:2	./.	./.	./.	./.
chr19	18311199	rs1046565	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:79,66:32:145:0.455:2	0/1:51,48:33:99:0.485:2	0/1:1,22:33:23:0.957:2	0/1:92,104:33:196:0.531:2	./.	./.	0/1:110,88:33:198:0.444:2	./.	0/1:1,182:34:183:0.995:2	0/1:92,92:32:184:0.500:2	./.
chr19	18321760	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,4:31:59:0.068:2	./.	./.	./.	./.	./.	./.	./.
chr19	18329240	rs1042050	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,34:32:93:0.366:2	0/1:25,24:32:49:0.490:2	0/1:0,27:31:27:1.00:2	0/1:66,93:32:159:0.585:2	0/1:94,99:32:193:0.513:2	0/1:0,176:33:176:1.00:2	0/1:111,80:33:191:0.419:2	./.	0/1:0,132:33:132:1.00:2	0/1:45,54:33:99:0.545:2	0/1:45,59:31:104:0.567:2
chr19	18329784	rs2229228	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,33:32:63:0.524:2	0/1:20,18:32:38:0.474:2	0/1:0,2:34:2:1.00:2	0/1:29,32:32:61:0.525:2	./.	./.	0/1:27,29:32:56:0.518:2	./.	0/1:0,64:33:64:1.00:2	./.	./.
chr19	18368810	rs999813	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,14:31:28:0.500:2	0/1:7,8:32:15:0.533:2	0/1:0,4:30:4:1.00:2	0/1:24,33:31:57:0.579:2	./.	./.	0/1:19,22:30:41:0.537:2	./.	./.	./.	0/1:0,34:31:34:1.00:2
chr19	18375255	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:27:10:0.300:2
chr19	18375563	rs12608744	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,25:33:50:0.500:2	0/1:8,10:32:18:0.556:2	0/1:0,8:32:8:1.00:2	0/1:35,20:30:55:0.364:2	./.	./.	./.	./.	./.	./.	./.
chr19	18375608	rs8102923	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,32:32:109:0.296:2	./.	./.	./.	0/1:0,50:32:50:1.00:2
chr19	18375659	rs12608843	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,26:31:40:0.650:2	0/1:17,6:31:23:0.261:2	0/1:0,6:31:6:1.00:2	0/1:38,38:30:76:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr19	18375815	rs8103177	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,6:31:17:0.375:2	./.	./.	./.	0/1:0,12:30:12:1.00:2
chr19	18375846	rs2277921	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,9:32:13:0.692:2	./.	./.	./.	0/1:0,6:33:6:1.00:2
chr19	18375882	rs12608777	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,8:27:12:0.667:2	./.	./.	./.	./.
chr19	18375999	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:31:55:0.073:2	./.	./.
chr19	18376282	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:31:111:0.036:2	./.	./.	./.	./.
chr19	18376407	rs8110972	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,34:31:66:0.515:2	0/1:17,19:31:36:0.528:2	0/1:0,10:31:10:1.00:2	0/1:52,38:31:90:0.422:2	./.	./.	0/1:67,47:30:114:0.412:2	./.	./.	./.	0/1:0,79:31:79:1.00:2
chr19	18376509	rs16982285	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,38:31:96:0.400:2
chr19	18376517	rs61740752	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,35:31:136:0.257:2	./.	./.	./.	0/1:41,50:31:92:0.549:2
chr19	18376518	rs61740751	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,65:33:111:0.586:2	0/1:40,43:32:83:0.518:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	18376522	rs2277922	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,47:30:111:0.427:2	0/1:42,40:32:84:0.488:2	0/1:0,14:33:14:1.00:2	0/1:81,55:32:136:0.404:2	./.	./.	0/1:102,39:31:141:0.277:2	./.	./.	./.	0/1:0,87:32:87:1.00:2
chr19	18376713	rs61740749	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,74:32:139:0.532:2	./.	./.
chr19	18376780	rs12462974	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,59:33:124:0.476:2
chr19	18376863	rs138404210	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,47:31:96:0.490:2	./.	./.	./.
chr19	18377274	rs3746186	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,43:30:99:0.434:2	0/1:47,35:29:82:0.427:2	0/1:0,15:29:15:1.00:2	0/1:77,43:30:121:0.358:2	./.	./.	0/1:61,64:30:125:0.512:2	./.	./.	./.	0/1:0,152:30:152:1.00:2
chr19	18377496	rs8104533	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,53:32:107:0.495:2	0/1:31,20:32:51:0.392:2	0/1:0,14:32:14:1.00:2	0/1:77,61:33:138:0.442:2	./.	./.	0/1:99,85:32:184:0.462:2	./.	./.	./.	0/1:1,125:33:126:0.992:2
chr19	18377647	rs8103906	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,28:28:70:0.400:2	0/1:25,11:31:36:0.306:2	0/1:0,8:32:8:1.00:2	0/1:33,20:30:53:0.377:2	./.	./.	0/1:40,39:28:79:0.494:2	./.	./.	./.	0/1:0,57:29:57:1.00:2
chr19	18377761	rs12609001	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,22:28:64:0.344:2	./.	./.	./.	0/1:39,23:26:62:0.371:2
chr19	18377791	rs146146831	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,48:29:97:0.495:2	./.	./.	./.
chr19	18377943	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,12:14:121:0.099:2	./.	./.	./.	./.
chr19	18377981	rs61740692	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,67:33:126:0.532:2	./.	./.
chr19	18378219	rs1469023	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,17:31:37:0.459:2	0/1:12,8:29:20:0.400:2	0/1:0,6:29:6:1.00:2	0/1:17,22:30:39:0.564:2	./.	./.	0/1:34,16:29:50:0.320:2	./.	./.	./.	0/1:0,31:27:31:1.00:2
chr19	18497024	rs1059519	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:33:5:1.00:2	0/1:64,39:34:103:0.379:2	0/1:62,49:32:111:0.441:2	0/1:0,89:32:89:1.00:2	0/1:0,104:33:104:1.00:2	0/1:0,101:33:101:1.00:2	0/1:0,70:34:70:1.00:2	./.	0/1:0,71:32:71:1.00:2
chr19	18497107	rs143742934	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:32:74:0.054:2
chr19	18497137	rs6413435	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,28:30:66:0.424:2	./.	0/1:2,62:28:64:0.969:2	./.	0/1:44,31:28:75:0.413:2	0/1:37,38:30:75:0.507:2	./.	0/1:17,30:30:47:0.638:2
chr19	18497141	rs1059369	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,37:30:71:0.521:2	0/1:40,34:32:74:0.459:2	./.	./.
chr19	18499106	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:137,5:28:143:0.035:2	0/1:131,11:29:142:0.077:2	0/1:134,9:30:143:0.063:2	0/1:139,5:29:144:0.035:2	./.	./.	./.	./.
chr19	18499151	rs1059022	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,25:30:57:0.439:2	./.	0/1:1,71:30:72:0.986:2	./.	0/1:20,18:31:38:0.474:2	0/1:26,32:32:58:0.552:2	./.	0/1:15,17:30:32:0.531:2
chr19	18499238	rs1804826	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,4:27:9:0.444:2	0/1:2,12:31:14:0.857:2	./.	./.
chr19	18502835	rs6512265	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,23:31:33:0.697:2	0/1:89,100:32:190:0.529:2	0/1:91,100:32:191:0.524:2	0/1:1,183:32:184:0.995:2	0/1:5,171:32:176:0.972:2	0/1:1,182:32:183:0.995:2	0/1:1,192:33:193:0.995:2	./.	0/1:0,166:32:166:1.00:2
chr19	18538742	rs10405636	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,74:29:75:1.00:2	./.	./.	0/1:3,65:30:68:0.956:2	./.	0/1:29,38:29:67:0.567:2	0/1:33,26:28:59:0.441:2	./.
chr19	18545786	rs1045631	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,41:31:89:0.461:2	./.	./.	0/1:62,57:32:119:0.479:2	./.	./.	0/1:32,35:32:67:0.522:2	./.
chr19	18546678	rs2303697	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,160:32:167:0.958:2	./.	./.	0/1:2,190:33:192:0.990:2	./.	0/1:105,60:33:165:0.364:2	0/1:70,62:32:132:0.470:2	./.
chr19	18546944	rs145333990	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,21:31:41:0.512:2	./.	./.	./.
chr19	18557249	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:30:85:0.047:2	./.	./.	./.
chr19	18562438	rs2303694	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,25:31:47:0.532:2	./.	./.	0/1:15,18:30:33:0.545:2	./.	0/1:22,24:32:46:0.522:2	./.	./.
chr19	18679351	rs11086117	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,18:33:38:0.474:2	./.
chr19	18679379	rs7648	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,7:32:25:0.280:2	0/1:9,4:31:13:0.308:2	./.	0/1:25,17:32:42:0.405:2	0/1:14,16:32:30:0.533:2	./.	0/1:6,15:30:21:0.714:2	0/1:17,13:32:30:0.433:2	0/1:14,17:33:31:0.548:2	./.	./.
chr19	18684563	rs2302055	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,22:32:28:0.786:2	0/1:4,7:33:11:0.636:2	./.	0/1:17,17:33:34:0.500:2	0/1:14,14:32:28:0.500:2	./.	0/1:14,18:33:32:0.563:2	0/1:16,10:32:26:0.385:2	0/1:18,5:34:23:0.217:2	./.	./.
chr19	18685892	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.	./.	./.
chr19	18685964	rs6554	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,7:32:26:0.269:2	0/1:13,5:31:18:0.278:2	./.	0/1:19,30:30:49:0.612:2	0/1:36,31:30:67:0.463:2	./.	0/1:47,36:31:83:0.434:2	0/1:49,26:31:75:0.347:2	0/1:40,24:33:64:0.375:2	0/1:20,25:32:45:0.556:2	./.
chr19	18710535	rs2238647	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:33,4:31:37:0.108:2	./.	0/1:44,36:30:80:0.450:2	./.	./.	0/1:18,21:30:39:0.538:2	./.	./.	./.	./.
chr19	18726856	rs709679	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,94:30:94:1.00:2	0/1:0,55:30:55:1.00:2	./.	0/1:71,61:30:132:0.462:2	./.	./.	0/1:72,50:31:122:0.410:2	./.	0/1:87,49:32:136:0.360:2	0/1:53,56:30:109:0.514:2	./.
chr19	18775077	rs1076235	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,10:33:18:0.556:2	./.	./.	0/1:12,12:31:24:0.500:2	0/1:14,8:32:22:0.364:2	0/1:10,11:34:21:0.524:2	./.	./.
chr19	18778687	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:116,4:30:120:0.033:2	./.	./.	./.	./.	./.	./.
chr19	18779113	rs17852385	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,4:31:12:0.333:2	./.
chr19	18856699	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,8:31:26:0.308:2	./.	./.	./.	./.	./.	./.
chr19	18864346	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:30:97:0.041:2	./.	./.	./.	./.
chr19	18864380	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:29:71:0.056:2	./.	./.	./.	./.
chr19	18864386	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.	./.	./.	./.
chr19	18876258	rs36070283	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,21:32:21:1.00:2	0/1:0,17:32:17:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	18876309	rs3746266	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,12:30:16:0.750:2	0/1:17,12:30:29:0.414:2	0/1:18,6:32:24:0.250:2	0/1:0,15:30:15:1.00:2	./.
chr19	18888150	rs78830644	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,7:29:13:0.538:2	./.	./.	./.	./.
chr19	18895749	rs140413656	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:53,4:27:57:0.070:2	./.	./.	0/1:101,9:22:110:0.082:2	0/1:158,12:24:170:0.071:2	0/1:110,8:29:118:0.068:2	0/1:158,11:24:169:0.065:2	0/1:125,12:22:137:0.088:2	./.	0/1:72,10:27:83:0.122:2	0/1:76,8:26:84:0.095:2
chr19	18895802	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:32:135:0.030:2	./.
chr19	18896519	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,32:32:72:0.444:2	./.	./.	./.	./.	./.
chr19	18897440	rs61739916	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,55:29:127:0.433:2	./.	./.	./.	./.	0/1:56,61:28:117:0.521:2
chr19	18943156	rs80065570	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,18:25:27:0.692:2	./.	./.	0/1:3,5:21:8:0.625:2	./.
chr19	18964066	rs141051363	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,22:32:61:0.361:2	./.	./.	./.	./.	./.	./.
chr19	18976484	rs140671518	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,48:31:100:0.480:2	./.	./.
chr19	18980172	rs4808863	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.
chr19	19011244	rs1127821	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:30:57:1.00:2	0/1:0,37:29:37:1.00:2	0/1:4,7:31:11:0.636:2	0/1:44,46:29:90:0.511:2	0/1:1,131:29:132:0.992:2	0/1:53,36:29:89:0.404:2	./.	0/1:0,117:27:117:1.00:2	./.	0/1:42,27:29:69:0.391:2	0/1:26,33:28:59:0.559:2
chr19	19017862	rs10330	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,54:29:104:0.519:2	./.	0/1:49,51:29:100:0.510:2	./.	./.	./.	./.	0/1:33,29:28:62:0.468:2
chr19	19021817	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,4:33:96:0.042:2	./.	./.	./.	./.	./.	./.	./.
chr19	19023853	rs3177137	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:33:40:1.00:2	0/1:0,33:33:33:1.00:2	0/1:7,7:32:14:0.500:2	0/1:31,38:33:69:0.551:2	0/1:0,74:33:74:1.00:2	0/1:33,26:32:59:0.441:2	./.	0/1:0,81:31:81:1.00:2	./.	0/1:41,30:32:71:0.423:2	0/1:30,23:32:53:0.434:2
chr19	19030611	rs139869066	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,29:28:69:0.420:2	0/1:19,23:30:42:0.548:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	19040312	rs1059240	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,5:32:5:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,3:29:3:1.00:2	./.	0/1:0,4:33:4:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,3:33:3:1.00:2	0/1:0,6:32:6:1.00:2
chr19	19040430	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,4:32:12:0.333:2	./.
chr19	19043777	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:122,5:27:127:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr19	19049194	rs11540741	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:32:11:0.545:2	./.	./.	0/1:61,58:31:119:0.487:2	./.	0/1:1,136:31:137:0.993:2	./.	./.	./.
chr19	19049198	rs1064351	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,97:32:97:1.00:2	0/1:0,55:32:55:1.00:2	./.	0/1:80,63:32:143:0.441:2	0/1:2,141:31:143:0.986:2	0/1:70,62:31:132:0.470:2	0/1:97,90:32:187:0.481:2	./.	./.	0/1:65,60:32:125:0.480:2	0/1:2,130:31:132:0.985:2
chr19	19105259	rs4808897	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,12:30:20:0.600:2	./.	./.	./.	./.	./.	0/1:67,40:31:107:0.374:2	./.	./.
chr19	19112442	rs371121890	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:31:70:0.057:2	./.	./.	./.	./.	./.
chr19	19135887	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:30:47:0.085:2	./.	./.	./.
chr19	19136541	rs4808907	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:31:53:1.00:2	0/1:0,34:31:34:1.00:2	0/1:4,5:31:9:0.556:2	0/1:0,71:32:71:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,68:32:68:1.00:2	./.	0/1:52,42:32:94:0.447:2	0/1:32,28:33:60:0.467:2	0/1:24,32:32:56:0.571:2	0/1:0,90:32:90:1.00:2
chr19	19137008	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,4:31:27:0.148:2	./.
chr19	19212658	rs56144126	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:30:4:0.750:2	./.	./.	./.	./.	./.	0/1:37,36:34:73:0.493:2	./.	./.
chr19	19216454	rs138036287	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:32:98:0.041:2	./.	./.	./.	./.	./.
chr19	19230816	rs45467802	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,39:29:91:0.433:2	./.	./.	./.
chr19	19230868	rs756791	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:31:52:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,72:32:72:1.00:2	0/1:31,8:29:39:0.205:2	0/1:37,21:32:58:0.362:2	0/1:0,60:33:60:1.00:2	0/1:30,21:32:51:0.412:2	0/1:0,31:32:31:1.00:2
chr19	19249238	rs10417318	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,13:27:24:0.542:2	./.	./.	./.	./.
chr19	19257383	rs143597015	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,7:27:19:0.368:2	./.	./.	./.	./.
chr19	19258537	rs200716984	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,7:17:33:0.212:2	0/1:32,12:12:44:0.273:2	./.	./.	0/1:19,10:11:29:0.345:2	./.	./.	0/1:16,7:14:23:0.304:2
chr19	19267910	rs12162274	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,23:30:69:0.333:2	0/1:40,50:30:90:0.556:2	./.	./.	./.
chr19	19304899	rs34282046	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,31:32:81:0.383:2	./.	./.	./.	./.	./.
chr19	19307797	rs72997200	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,5:28:9:0.556:2	./.	./.
chr19	19309970	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,3:30:23:0.130:2
chr19	19335177	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,32:32:74:0.438:2	./.	./.	./.	./.	./.
chr19	19337745	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,15:29:45:0.333:2	./.	./.	./.	./.	./.
chr19	19339196	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,4:32:47:0.085:2	./.	./.	./.	./.	./.	./.	./.
chr19	19345802	rs2228600	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,49:32:94:0.521:2	0/1:36,29:32:65:0.446:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	19351431	rs2229851	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,58:31:124:0.468:2	./.	./.	./.	./.
chr19	19359530	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,26:29:65:0.400:2	./.	./.	./.	./.	./.	./.	./.
chr19	19369435	rs2074295	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:30:13:0.538:2	./.	./.	0/1:4,5:32:9:0.556:2	./.	0/1:10,10:31:20:0.500:2	0/1:5,6:29:11:0.545:2	./.
chr19	19380513	rs187429064	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,34:32:65:0.523:2	0/1:14,26:32:40:0.650:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	19380996	rs2074300	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:41,39:33:80:0.488:2	0/1:23,31:32:54:0.574:2	./.	./.	./.	./.	0/1:89,80:32:169:0.473:2	./.	./.	./.	./.
chr19	19390185	rs11555053	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:30:4:1.00:2	0/1:10,21:30:31:0.677:2	./.	./.	./.	./.	0/1:30,14:32:44:0.318:2	0/1:17,36:32:53:0.679:2	./.
chr19	19391045	rs17751021	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,22:31:47:0.468:2	0/1:16,25:31:41:0.610:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	19408000	rs191697530	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,13:10:54:0.241:2	./.	./.	./.	./.	./.	./.	./.
chr19	19413092	rs17751061	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,14:31:14:1.00:2	0/1:57,40:30:97:0.412:2	./.	./.	./.	./.	0/1:57,55:32:113:0.491:2	0/1:38,39:31:77:0.506:2	./.
chr19	19414176	rs146659898	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,40:32:76:0.526:2	./.	./.	./.	./.
chr19	19431935	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,3:32:28:0.107:2	./.
chr19	19446936	rs769267	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,38:32:84:0.452:2	0/1:25,32:31:57:0.561:2	./.	0/1:79,56:32:135:0.415:2	0/1:2,119:31:121:0.983:2	0/1:0,106:31:106:1.00:2	0/1:82,52:32:134:0.388:2	0/1:1,132:32:133:0.992:2	0/1:73,50:32:124:0.407:2	0/1:66,51:32:118:0.436:2	0/1:2,148:31:151:0.987:2
chr19	19449686	rs2074090	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,39:33:74:0.527:2	0/1:26,29:32:55:0.527:2	./.	0/1:68,67:32:135:0.496:2	0/1:0,123:32:123:1.00:2	0/1:1,147:32:148:0.993:2	0/1:80,77:32:157:0.490:2	0/1:1,127:32:128:0.992:2	0/1:73,62:33:135:0.459:2	0/1:59,52:33:111:0.468:2	0/1:1,121:32:123:0.992:2
chr19	19453426	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:106,4:32:110:0.036:2	./.	./.	./.	./.	./.	./.	./.
chr19	19606634	rs1047361	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,10:30:28:0.357:2	0/1:10,11:31:21:0.524:2	0/1:0,4:30:4:1.00:2	0/1:16,25:31:41:0.610:2	./.	./.	0/1:11,12:31:23:0.522:2	./.	0/1:17,20:33:37:0.541:2	0/1:9,8:28:17:0.471:2	./.
chr19	19609522	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,4:30:68:0.059:2	./.	./.	./.	./.	./.	./.
chr19	19625547	rs7250893	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:26:8:0.500:2	0/1:2,4:29:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	19626821	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:122,4:32:126:0.032:2	./.	./.	./.	./.	./.	./.
chr19	19654117	rs7252453	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,23:32:24:1.00:2	0/1:68,52:32:120:0.433:2	./.	./.	./.	./.	0/1:51,54:33:105:0.514:2	0/1:45,50:32:95:0.526:2	./.
chr19	19654189	rs45556231	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,27:32:27:1.00:2	./.	./.	./.	./.	./.	0/1:44,55:32:99:0.556:2	0/1:31,50:29:82:0.617:2	./.
chr19	19654834	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	19656615	rs61744761	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,25:31:25:1.00:2	./.	./.	./.	./.	./.	0/1:71,85:31:156:0.545:2	0/1:56,77:31:133:0.579:2	./.
chr19	19656720	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,6:31:15:0.400:2	./.	./.	./.
chr19	19735257	rs1266503	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:30:82:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,94:31:94:1.00:2	0/1:0,123:31:123:1.00:2	0/1:0,107:31:108:1.00:2	0/1:0,114:31:114:1.00:2	0/1:0,95:31:95:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,88:31:88:1.00:2
chr19	19737686	rs33982830	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,3:30:3:1.00:2	0/1:0,9:30:9:1.00:2	./.	./.	0/1:4,4:28:8:0.500:2	./.	./.
chr19	19744692	rs117038725	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,34:31:47:0.723:2	./.	./.	./.	./.	./.	./.	./.
chr19	19744909	rs45521232	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,10:33:15:0.667:2	./.
chr19	19746013	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,13:14:98:0.133:2	./.	./.	./.
chr19	19764603	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:32:61:0.066:2
chr19	19765499	rs45522544	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,33:33:54:0.611:2	./.	./.
chr19	19766726	rs61752462	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,10:28:24:0.417:2	./.	./.	./.	./.	./.	./.
chr19	19773923	rs884480	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:30:10:1.00:2	./.	./.	0/1:61,41:30:102:0.402:2	./.	0/1:56,47:31:103:0.456:2	./.	0/1:35,29:29:64:0.453:2	0/1:62,41:31:103:0.398:2
chr19	19788767	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:32:56:0.071:2	./.
chr19	19788778	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:32:65:0.062:2	./.
chr19	19788795	rs139507931	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:33:62:0.065:2	./.
chr19	19789528	rs2304130	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,22:30:26:0.846:2	./.	./.	./.	./.	0/1:19,27:29:46:0.587:2	./.	./.
chr19	19790159	rs4808209	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:30,29:33:59:0.492:2	0/1:8,11:30:19:0.579:2	./.	./.	./.	./.	0/1:61,25:33:86:0.291:2	./.	./.	./.	./.
chr19	19790178	rs59327775	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,42:30:79:0.532:2	./.	./.	./.	./.	./.	./.
chr19	19822209	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:32:59:0.068:2	./.
chr19	19822818	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,4:27:26:0.154:2	./.	./.	./.
chr19	19822822	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,4:31:26:0.154:2	./.	./.	./.
chr19	19822854	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,4:33:25:0.160:2	./.	./.	./.
chr19	19823270	rs12973901	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:12,19:33:31:0.613:2	0/1:15,5:31:20:0.250:2	./.	./.	./.	./.	0/1:23,15:32:38:0.395:2	./.	./.	./.	./.
chr19	19824879	rs73006755	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,17:33:21:0.810:2	0/1:9,3:35:12:0.250:2	./.	./.	./.	./.
chr19	19825258	rs61731046	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,11:32:33:0.333:2	0/1:18,5:32:23:0.217:2	./.	./.	./.	./.
chr19	20003109	rs8106559	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,7:32:15:0.467:2	./.	./.	0/1:8,17:31:25:0.680:2	./.	./.	./.
chr19	20003113	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	20003157	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	20003160	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	20026167	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,5:30:59:0.085:2	./.	./.	./.	./.	./.
chr19	20026199	rs150187903	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,5:32:46:0.109:2	./.	0/1:63,4:30:67:0.060:2	./.	./.	./.	./.	./.
chr19	20044041	rs12151060	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,24:30:49:0.490:2	./.	./.	0/1:47,42:31:89:0.472:2	./.	0/1:49,39:32:88:0.443:2	./.
chr19	20044568	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,3:34:33:0.091:2	./.
chr19	20116963	rs17679334	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,57:32:57:1.00:2	0/1:29,27:32:56:0.482:2	0/1:35,33:32:68:0.485:2	./.	./.	0/1:44,22:32:66:0.333:2
chr19	20133846	rs7255165	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:29:12:0.250:2	./.	./.	0/1:1,94:30:95:0.989:2	0/1:75,40:31:115:0.348:2	0/1:45,54:30:99:0.545:2	./.	./.	0/1:78,56:31:134:0.418:2
chr19	20150125	rs2286921	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:32:25:1.00:2	0/1:0,9:31:9:1.00:2	0/1:1,3:31:4:0.750:2	0/1:0,38:32:38:1.00:2	0/1:32,13:31:45:0.289:2	0/1:0,34:33:34:1.00:2	0/1:1,28:31:29:0.966:2	0/1:44,7:32:51:0.137:2	0/1:0,26:32:26:1.00:2	0/1:31,13:31:44:0.295:2	0/1:0,38:32:38:1.00:2
chr19	20150175	rs2286922	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:31:29:1.00:2	0/1:1,9:29:10:0.900:2	0/1:0,6:33:6:1.00:2	0/1:0,61:33:61:1.00:2	0/1:39,24:32:63:0.381:2	0/1:0,42:32:42:1.00:2	0/1:2,41:32:43:0.953:2	0/1:47,13:30:60:0.217:2	0/1:0,43:34:43:1.00:2	0/1:41,23:32:64:0.359:2	0/1:0,50:33:50:1.00:2
chr19	20228941	rs61998186	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,12:33:23:0.522:2	0/1:8,11:32:19:0.579:2	./.	./.	./.	./.	./.	./.
chr19	20229486	rs1725935	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,15:31:26:0.577:2	0/1:7,4:32:11:0.364:2	./.	./.	./.	./.	./.	./.	0/1:11,6:30:17:0.353:2	./.	0/1:16,9:33:25:0.360:2
chr19	20307777	rs112723967	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,27:30:67:0.403:2	./.	./.	./.
chr19	20308301	rs113493829	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,16:33:42:0.381:2	./.	./.	./.
chr19	20308628	rs199843595	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.	./.	./.	./.	./.
chr19	20577384	rs139385611	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,11:31:32:0.344:2	0/1:6,9:31:15:0.600:2	0/1:13,6:30:19:0.316:2	./.	0/1:28,7:27:35:0.200:2	0/1:14,16:32:30:0.533:2	0/1:15,21:32:36:0.583:2	0/1:20,25:32:45:0.556:2
chr19	20577959	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,4:31:22:0.182:2	./.	./.	./.	./.
chr19	20577989	rs147572115	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,10:31:26:0.385:2	./.	./.	./.	./.	0/1:8,12:32:20:0.600:2	./.	./.
chr19	20578013	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,4:32:17:0.235:2	./.	./.	./.	./.
chr19	20578038	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,4:32:18:0.222:2	./.	./.	./.	./.
chr19	20578850	rs114475690	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,4:33:15:0.267:2	./.	0/1:43,23:32:66:0.348:2	0/1:52,37:32:89:0.416:2	./.	0/1:68,56:31:124:0.452:2	./.	0/1:69,51:31:120:0.425:2	0/1:73,79:32:152:0.520:2
chr19	20579239	rs116539467	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:32:10:0.600:2	./.	./.	./.	./.	0/1:12,3:33:15:0.200:2	./.	./.
chr19	20727463	rs10411329	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,6:30:21:0.286:2	0/1:7,4:33:11:0.364:2	./.	0/1:0,16:31:16:1.00:2	0/1:0,8:30:8:1.00:2	./.	./.	0/1:9,10:29:19:0.526:2	0/1:7,12:29:19:0.632:2	./.	./.
chr19	20727932	rs33926	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,8:32:18:0.444:2	0/1:9,3:32:12:0.250:2	./.	0/1:0,21:30:21:1.00:2	0/1:12,6:29:18:0.333:2	./.	./.	0/1:12,4:31:16:0.250:2	0/1:6,3:33:9:0.333:2	./.	./.
chr19	20736588	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:28:81:0.049:2	./.	./.	./.	./.	./.
chr19	20807185	rs10408597	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,15:32:15:1.00:2	0/1:0,13:31:13:1.00:2	./.	0/1:0,24:32:24:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,20:33:20:1.00:2	0/1:1,20:31:21:0.952:2	0/1:0,27:32:27:1.00:2
chr19	20807270	rs4809070	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,5:33:5:1.00:2	./.	0/1:0,4:34:4:1.00:2
chr19	20807292	rs4809072	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	0/1:0,2:29:2:1.00:2	0/1:0,2:30:2:1.00:2	./.	./.
chr19	20807352	rs62107361	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:31:18:1.00:2	0/1:0,6:33:6:1.00:2	0/1:1,2:32:3:0.667:2	0/1:0,10:32:10:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,17:33:17:1.00:2
chr19	20807438	rs62107362	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,20:32:20:1.00:2	0/1:0,9:32:9:1.00:2	./.	0/1:0,27:32:27:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,26:32:26:1.00:2
chr19	20808143	rs73002662	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,36:28:63:0.571:2	0/1:19,12:28:31:0.387:2	./.	./.	./.	./.	./.	./.	0/1:22,22:29:44:0.500:2	./.	./.
chr19	20808149	rs1991528	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:29:68:1.00:2	0/1:0,33:29:33:1.00:2	0/1:3,4:29:7:0.571:2	0/1:0,30:30:30:1.00:2	0/1:0,25:28:25:1.00:2	0/1:2,38:29:40:0.950:2	0/1:0,19:30:19:1.00:2	0/1:1,43:29:44:0.977:2	0/1:0,45:29:45:1.00:2	0/1:0,41:30:41:1.00:2	0/1:1,74:29:75:0.987:2
chr19	20808374	rs61741861	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,30:30:77:0.390:2	0/1:22,24:29:46:0.522:2	./.	./.	./.	./.	./.	./.	0/1:52,53:30:105:0.505:2	./.	./.
chr19	20808414	rs8110802	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	20808418	rs8111015	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	20808454	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,6:32:56:0.107:2	./.
chr19	20808455	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,6:32:56:0.107:2	./.
chr19	20828522	rs8106117	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,79:30:162:0.488:2	0/1:61,41:29:102:0.402:2	./.	./.	./.	./.	./.	./.	0/1:84,87:31:171:0.509:2	./.	./.
chr19	21131571	rs56321708	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,79:30:156:0.506:2	./.	./.	./.	./.	0/1:93,74:31:167:0.443:2	./.	./.
chr19	21131664	rs56231962	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,26:30:59:0.441:2	./.	./.	./.	./.	0/1:54,43:31:97:0.443:2	./.	./.
chr19	21131728	rs12972502	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:32:10:1.00:2	./.	./.	./.	./.	0/1:50,34:32:84:0.405:2	./.	0/1:30,36:32:66:0.545:2	./.
chr19	21131850	rs56393308	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,15:33:43:0.349:2	./.	./.	./.	./.	0/1:17,27:34:44:0.614:2	./.	./.
chr19	21131870	rs11665978	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,20:30:49:0.408:2	./.	./.	./.	./.	0/1:26,32:30:58:0.552:2	./.	./.
chr19	21132072	rs61738573	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:34:7:0.429:2	./.	./.
chr19	21132129	rs11670246	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:34:5:0.600:2	./.	./.
chr19	21132211	rs11665995	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,7:31:18:0.389:2	./.	./.
chr19	21132394	rs11666887	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,13:31:33:0.394:2	./.	./.	./.	./.	0/1:13,12:32:25:0.480:2	./.	./.
chr19	21132751	rs56207286	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,6:33:17:0.353:2	./.	./.	./.	./.	0/1:19,14:33:33:0.424:2	./.	./.
chr19	21240722	rs61744905	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,7:28:13:0.538:2	./.
chr19	21281092	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,5:31:132:0.038:2	./.	./.	./.
chr19	21300010	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,4:33:63:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr19	21300462	rs2884554	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,27:32:27:1.00:2	0/1:0,12:32:12:1.00:2	./.	0/1:15,14:33:29:0.483:2	0/1:0,29:32:29:1.00:2	0/1:0,26:32:26:1.00:2	0/1:1,32:33:33:0.970:2	0/1:0,22:32:22:1.00:2	0/1:25,13:34:38:0.342:2	0/1:14,19:33:33:0.576:2	0/1:0,45:33:46:1.00:2
chr19	21326358	rs17445374	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,42:32:89:0.472:2	./.
chr19	21349144	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:32:102:0.039:2	./.
chr19	21349189	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:33:155:0.026:2	./.
chr19	21476807	rs146185092	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,20:32:59:0.339:2	./.
chr19	21477379	rs504280	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:41,53:32:94:0.564:2	0/1:30,32:32:62:0.516:2	0/1:8,13:32:21:0.619:2	./.	./.	./.	./.	./.	0/1:86,70:33:156:0.449:2	0/1:64,52:32:116:0.448:2	./.
chr19	21477403	rs1781872	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,48:32:97:0.495:2	0/1:31,26:32:57:0.456:2	./.	./.	./.	0/1:68,56:31:124:0.452:2	./.	./.	./.	./.	./.
chr19	21477431	rs1781873	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,10:33:21:0.476:2	0/1:43,58:33:101:0.574:2	0/1:1,86:32:87:0.989:2	0/1:45,65:32:110:0.591:2	0/1:0,104:33:104:1.00:2	0/1:66,71:33:137:0.518:2	0/1:44,79:33:123:0.642:2	0/1:53,47:32:100:0.470:2	0/1:0,125:33:125:1.00:2
chr19	21492062	rs547516	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:30:65:1.00:2	0/1:1,25:31:26:0.962:2	0/1:0,3:31:3:1.00:2	0/1:46,30:30:76:0.395:2	0/1:1,41:30:42:0.976:2	0/1:0,51:29:51:1.00:2	0/1:0,45:30:45:1.00:2	0/1:35,24:29:59:0.407:2	0/1:0,43:31:43:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,53:31:53:1.00:2
chr19	21544571	rs1142653	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,5:32:12:0.417:2	0/1:49,23:31:72:0.319:2	0/1:0,40:30:40:1.00:2	0/1:43,33:30:76:0.434:2	0/1:0,65:31:65:1.00:2	0/1:49,28:31:77:0.364:2	0/1:63,24:32:87:0.276:2	0/1:50,34:32:84:0.405:2	0/1:1,79:31:80:0.988:2
chr19	21580012	rs62110379	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:33,33:30:66:0.500:2	0/1:10,21:29:31:0.677:2	0/1:8,9:30:17:0.529:2	./.	./.	./.	./.	./.	./.	0/1:43,37:30:80:0.463:2	./.
chr19	21580104	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:32:45:0.089:2
chr19	21588007	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:32:103:0.039:2	./.
chr19	21606429	rs4621113	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,2:33:4:0.500:2	0/1:12,3:32:15:0.200:2	0/1:1,17:29:18:0.944:2	0/1:12,10:32:22:0.455:2	0/1:1,14:30:15:0.933:2	0/1:7,12:32:19:0.632:2	0/1:2,26:32:28:0.929:2	0/1:7,6:31:13:0.462:2	0/1:0,28:32:28:1.00:2
chr19	21606719	rs10414834	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,14:30:21:0.667:2	0/1:2,7:30:9:0.778:2	./.	./.	./.	0/1:8,9:29:17:0.529:2	./.	./.	./.	./.	./.
chr19	21608102	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:35:58:0.069:2	./.	./.
chr19	21608110	rs17618778	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:23,18:32:41:0.439:2	0/1:12,7:32:19:0.368:2	0/1:3,4:31:7:0.571:2	./.	./.	./.	./.	./.	./.	0/1:40,26:30:66:0.394:2	./.
chr19	21608153	rs35148123	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:22,14:33:36:0.389:2	0/1:13,7:32:20:0.350:2	./.	./.	./.	./.	./.	./.	./.	0/1:41,24:33:65:0.369:2	./.
chr19	21608203	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,8:32:25:0.320:2	0/1:9,3:32:12:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	21608264	rs56089424	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,3:33:16:0.188:2	./.
chr19	21608302	rs138802937	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,17:32:22:0.773:2	./.	./.	./.	./.	./.	./.	./.
chr19	21608311	rs35829872	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:13,10:33:23:0.435:2	./.	./.	0/1:22,6:32:28:0.214:2	./.	./.	./.	0/1:17,5:32:22:0.227:2	./.	./.	./.
chr19	21608319	rs56080558	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:13,14:33:27:0.519:2	0/1:7,4:32:11:0.364:2	./.	0/1:26,8:33:34:0.235:2	./.	./.	./.	0/1:19,10:32:29:0.345:2	./.	0/1:19,6:30:25:0.240:2	./.
chr19	21609365	rs145111604	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,34:31:76:0.447:2	./.
chr19	21609743	rs2968082	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:32:16:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,3:32:3:1.00:2	0/1:19,6:32:25:0.240:2	0/1:0,19:32:19:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,15:31:15:1.00:2	0/1:10,5:31:15:0.333:2	0/1:0,18:33:18:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,23:32:23:1.00:2
chr19	21610017	rs117194989	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,31:32:70:0.443:2	./.
chr19	21610180	rs62110427	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	21688602	rs10420016	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,10:28:22:0.455:2	0/1:8,8:29:16:0.500:2	0/1:0,4:32:4:1.00:2	0/1:11,17:30:28:0.607:2	0/1:0,10:29:10:1.00:2	0/1:12,20:29:32:0.625:2	0/1:0,16:31:16:1.00:2	0/1:14,12:30:26:0.462:2	0/1:0,22:31:22:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,22:31:22:1.00:2
chr19	21719401	rs35782355	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,13:33:27:0.481:2	0/1:0,10:32:10:1.00:2	0/1:18,9:32:27:0.333:2	0/1:0,8:33:8:1.00:2	0/1:14,15:33:29:0.517:2	0/1:0,18:34:18:1.00:2	0/1:10,3:34:13:0.231:2	0/1:0,38:33:38:1.00:2
chr19	21720023	rs117126050	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,9:31:12:0.750:2
chr19	21720803	rs2562473	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:6,21:32:27:0.778:2	0/1:8,21:32:29:0.724:2	./.	./.	./.	./.	./.	./.	./.	0/1:13,12:31:25:0.480:2	./.
chr19	21720870	rs201032310	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,7:32:16:0.438:2	./.	./.
chr19	21909948	rs7246400	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:32:25:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,30:31:30:1.00:2	0/1:30,21:30:51:0.412:2	0/1:0,22:32:22:1.00:2	0/1:10,23:31:33:0.697:2	0/1:0,36:33:36:1.00:2	./.	0/1:0,46:31:46:1.00:2
chr19	21910451	rs35587380	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,8:30:28:0.286:2	./.
chr19	21910504	.	G	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,6:32:37:0.162:2	./.	./.	0/1:24,3:31:27:0.111:2	./.	0/1:34,3:32:37:0.081:2	./.	./.
chr19	21927784	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,11:32:146:0.075:2	0/1:131,9:33:140:0.064:2	./.	0/1:160,12:32:172:0.070:2
chr19	21927835	.	A	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:32:167:0.024:2	./.	0/1:169,13:33:182:0.071:2	0/1:131,5:35:136:0.037:2	./.	0/1:178,4:34:182:0.022:2
chr19	21948570	rs12974842	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,16:33:38:0.421:2	./.
chr19	21991832	rs150475394	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,10:28:19:0.526:2	0/1:4,3:25:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22001931	rs375346815	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:32:184:0.022:2	./.
chr19	22001942	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,4:32:83:0.048:2	./.	./.	./.	./.	./.	./.
chr19	22001955	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:33:154:0.026:2	./.
chr19	22001958	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:33:155:0.026:2	./.
chr19	22153495	rs2359812	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,13:32:24:0.542:2	0/1:13,6:32:19:0.316:2	0/1:0,3:32:3:1.00:2	0/1:1,37:32:38:0.974:2	0/1:12,5:32:17:0.294:2	0/1:0,36:32:36:1.00:2	./.	0/1:0,25:32:25:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,31:32:31:1.00:2	0/1:24,19:32:43:0.442:2
chr19	22154457	rs181390472	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:32:13:0.385:2	./.	./.	./.	./.	./.	./.	./.
chr19	22154732	rs8108957	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,26:33:66:0.394:2	0/1:25,18:32:43:0.419:2	0/1:4,5:33:9:0.556:2	0/1:0,76:33:76:1.00:2	0/1:25,27:31:52:0.519:2	0/1:0,59:32:59:1.00:2	./.	0/1:0,44:32:44:1.00:2	0/1:0,82:33:82:1.00:2	0/1:0,82:33:82:1.00:2	0/1:39,38:32:77:0.494:2
chr19	22155346	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,3:34:35:0.086:2
chr19	22155434	rs139351235	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,3:31:8:0.375:2	./.	./.	./.	./.	./.	./.
chr19	22155463	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,3:32:26:0.115:2
chr19	22155520	rs7258270	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,4:31:12:0.333:2	0/1:5,4:31:9:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22155698	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,3:32:25:0.120:2
chr19	22155715	rs201994264	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,3:31:17:0.176:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22155757	rs7258849	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:13,5:32:18:0.278:2	0/1:15,9:32:24:0.375:2	./.	./.	0/1:8,4:27:12:0.333:2	./.	./.	./.	./.	./.	./.
chr19	22155918	rs10425763	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,5:33:12:0.417:2	0/1:0,45:32:45:1.00:2	./.	0/1:0,36:32:36:1.00:2	./.	0/1:1,73:33:74:0.986:2	0/1:1,54:33:55:0.982:2	0/1:22,33:33:55:0.600:2	0/1:43,15:33:58:0.259:2
chr19	22156482	rs12975751	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,6:31:9:0.667:2	0/1:1,48:31:49:0.980:2	./.	0/1:1,52:31:53:0.981:2	./.	0/1:3,53:31:56:0.946:2	0/1:0,71:32:71:1.00:2	0/1:31,27:30:58:0.466:2	0/1:39,36:32:75:0.480:2
chr19	22156585	rs1018912	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:30:34:1.00:2	0/1:0,24:31:24:1.00:2	0/1:5,4:29:9:0.444:2	0/1:0,25:29:25:1.00:2	0/1:0,18:28:18:1.00:2	0/1:0,34:29:34:1.00:2	0/1:9,6:28:15:0.400:2	0/1:0,17:28:17:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,35:29:35:1.00:2	0/1:0,43:30:43:1.00:2
chr19	22156943	rs12462668	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:13,4:32:17:0.235:2	./.	./.	./.	0/1:10,4:32:14:0.286:2	./.	./.	./.	./.	0/1:21,4:33:25:0.160:2	./.
chr19	22156992	rs2007506	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,8:29:20:0.400:2	./.	./.	0/1:0,30:32:30:1.00:2	0/1:7,4:32:11:0.364:2	0/1:0,14:32:14:1.00:2	./.	0/1:1,18:30:19:0.947:2	0/1:0,22:33:22:1.00:2	0/1:0,9:32:9:1.00:2	0/1:8,14:32:22:0.636:2
chr19	22157022	rs117477873	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:34:7:0.571:2	./.	./.	./.	./.	./.
chr19	22157302	rs10419899	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,41:33:85:0.482:2	0/1:27,25:32:52:0.481:2	0/1:1,2:32:3:0.667:2	0/1:0,96:32:96:1.00:2	0/1:19,32:32:51:0.627:2	0/1:0,68:31:68:1.00:2	./.	0/1:0,69:32:69:1.00:2	0/1:0,106:33:106:1.00:2	0/1:0,93:32:93:1.00:2	0/1:53,48:32:101:0.475:2
chr19	22157328	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,4:31:69:0.058:2	./.	./.	./.	./.	./.	./.
chr19	22157380	rs190797248	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,5:29:78:0.064:2	./.	./.	./.	./.	./.	./.
chr19	22157397	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,5:30:76:0.066:2	./.	./.	./.	./.	./.	./.
chr19	22171647	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:31:51:0.078:2	./.	./.	./.	./.
chr19	22235478	rs3752168	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:15,12:27:27:0.444:2	0/1:8,5:29:13:0.385:2	./.	./.	0/1:15,14:28:29:0.483:2	./.	./.	./.	./.	0/1:2,7:27:9:0.778:2	./.
chr19	22255722	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,3:33:54:0.056:2	./.	./.
chr19	22255736	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,3:33:41:0.073:2	./.	./.
chr19	22256347	rs10423157	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,3:33:42:0.071:2	./.	./.	./.
chr19	22271941	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:31:40:0.100:2	./.	./.	./.
chr19	22271965	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:32:45:0.089:2	./.	./.	./.
chr19	22271988	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:32:40:0.100:2	./.	./.	./.
chr19	22363253	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,3:31:16:0.188:2	./.	./.	./.	0/1:20,4:33:24:0.167:2	./.
chr19	22363448	rs200452805	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,5:30:29:0.172:2	./.	./.	./.	./.	./.
chr19	22363493	rs78855594	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,10:32:27:0.370:2	0/1:6,4:32:10:0.400:2	./.	0/1:30,20:31:50:0.400:2	0/1:10,4:29:14:0.286:2	0/1:21,12:32:33:0.364:2	0/1:19,6:30:25:0.240:2	0/1:28,6:33:34:0.176:2	0/1:16,11:32:27:0.407:2	0/1:21,8:33:29:0.276:2	0/1:36,7:30:43:0.163:2
chr19	22363508	rs78050927	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,14:30:27:0.519:2	0/1:8,6:32:14:0.429:2	./.	0/1:26,21:30:47:0.447:2	0/1:10,4:30:14:0.286:2	0/1:19,12:31:31:0.387:2	0/1:18,6:29:24:0.250:2	0/1:25,8:30:33:0.242:2	0/1:13,13:31:26:0.500:2	0/1:18,9:31:27:0.333:2	0/1:35,8:30:43:0.186:2
chr19	22363589	rs80146743	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,6:32:21:0.286:2	0/1:18,4:32:22:0.182:2	./.	0/1:20,5:32:25:0.200:2	0/1:13,4:27:17:0.235:2	0/1:21,8:31:29:0.276:2	0/1:9,4:30:13:0.308:2	0/1:22,5:32:27:0.185:2	./.	0/1:10,3:30:13:0.231:2	0/1:29,3:32:32:0.094:2
chr19	22363610	rs201622264	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,5:33:33:0.152:2	./.	./.	./.	./.	./.
chr19	22363615	rs76328545	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,4:33:34:0.118:2	./.	./.	./.	./.	./.
chr19	22363643	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,3:32:27:0.111:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22363796	rs142355819	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,4:31:10:0.400:2	./.	./.	./.	./.	./.	./.
chr19	22363826	rs7252593	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,8:32:16:0.500:2	0/1:11,5:31:16:0.313:2	./.	0/1:14,7:31:21:0.333:2	0/1:8,4:32:12:0.333:2	0/1:8,5:30:13:0.385:2	0/1:6,6:23:12:0.500:2	0/1:4,6:31:10:0.600:2	0/1:18,11:33:29:0.379:2	0/1:9,5:32:14:0.357:2	0/1:13,9:33:22:0.409:2
chr19	22363844	rs7252604	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,6:30:18:0.333:2	0/1:11,4:31:15:0.267:2	./.	./.	0/1:9,3:29:12:0.250:2	0/1:7,3:30:10:0.300:2	0/1:5,4:29:9:0.444:2	0/1:5,3:33:8:0.375:2	0/1:18,5:30:23:0.217:2	0/1:10,3:32:13:0.231:2	0/1:11,5:32:16:0.313:2
chr19	22363861	rs7253392	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,3:34:22:0.136:2	./.	./.
chr19	22363988	rs200880635	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,14:31:28:0.500:2	./.
chr19	22364100	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:32:126:0.032:2	./.	./.	./.	./.	./.
chr19	22364101	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:32:127:0.031:2	./.	./.	./.	./.	./.
chr19	22364107	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:31:138:0.029:2	./.	./.	./.	./.	./.
chr19	22364233	rs12986319	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,57:32:126:0.452:2	./.	0/1:72,46:31:118:0.390:2	./.	0/1:80,40:31:120:0.333:2	0/1:79,68:32:147:0.463:2
chr19	22364322	rs62000438	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,37:31:66:0.561:2	0/1:31,20:30:51:0.392:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22574357	rs200702907	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,8:31:28:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22574468	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:155,4:31:159:0.025:2	./.	0/1:170,5:31:175:0.029:2	./.	./.	./.	./.
chr19	22574699	rs200563839	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	0/1:2,6:29:8:0.750:2	./.	./.	./.	./.
chr19	22574752	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:33:109:0.037:2	./.
chr19	22574787	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,6:33:194:0.031:2	./.	0/1:188,8:33:196:0.041:2	0/1:156,6:33:162:0.037:2	0/1:192,4:33:197:0.020:2	0/1:184,11:32:195:0.056:2	0/1:172,6:33:178:0.034:2	./.
chr19	22574788	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,10:30:36:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22574806	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,12:32:39:0.308:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22574807	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:189,5:32:194:0.026:2	./.	./.	./.	./.	0/1:176,9:31:185:0.049:2	./.	./.
chr19	22574818	rs201005223	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:30,8:29:38:0.211:2	0/1:64,105:29:169:0.621:2	./.	0/1:125,40:28:165:0.242:2	./.	0/1:86,94:30:180:0.522:2	0/1:114,57:31:171:0.333:2	./.	0/1:123,51:30:174:0.293:2
chr19	22574898	rs201792604	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:28:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22574969	rs199963534	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:32:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22574988	rs200887709	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22575206	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:31:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22575301	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,7:32:31:0.226:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22575313	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,5:31:29:0.172:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22575488	rs7247735	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,9:31:14:0.643:2	0/1:0,105:32:105:1.00:2	./.	0/1:71,35:31:106:0.330:2	0/1:111,4:31:115:0.035:2	0/1:1,99:31:101:0.990:2	0/1:98,30:31:128:0.234:2	./.	0/1:92,58:32:150:0.387:2
chr19	22575596	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,8:32:27:0.296:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22575670	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,5:30:184:0.027:2	./.	./.	./.	./.
chr19	22575777	rs200167484	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22586192	rs1368476	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,45:29:47:0.957:2	./.	0/1:44,28:29:72:0.389:2	./.	0/1:0,28:30:28:1.00:2	0/1:64,15:31:79:0.190:2	./.	0/1:92,26:29:118:0.220:2
chr19	22586310	rs148446754	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,23:32:82:0.280:2	./.	./.	./.
chr19	22836174	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:32:74:0.054:2	0/1:124,4:32:128:0.031:2	./.	0/1:98,4:33:102:0.039:2	./.
chr19	22846680	rs12975335	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22846697	rs62118831	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:31:6:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22846788	rs11672238	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,45:32:135:0.333:2	0/1:96,48:32:144:0.333:2	0/1:64,53:32:118:0.453:2	./.	./.	./.
chr19	22846866	rs376885920	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,4:32:116:0.034:2	./.	./.	./.	0/1:99,8:32:107:0.075:2	0/1:85,4:32:89:0.045:2	./.	./.
chr19	22846871	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,8:34:122:0.067:2	./.	./.	./.	0/1:101,6:33:111:0.056:2	0/1:85,7:33:92:0.076:2	./.	0/1:171,8:34:181:0.045:2
chr19	22846889	rs684399	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:135,4:32:139:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr19	22847012	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:143,7:34:150:0.047:2	./.	./.	./.	./.	./.	./.	./.
chr19	22847072	rs146300593	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,16:32:29:0.552:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22847084	rs139985933	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,14:32:27:0.519:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22847179	rs201122597	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:31:8:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22847567	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:44,7:30:51:0.137:2	0/1:108,88:30:196:0.449:2	./.	0/1:159,35:30:194:0.180:2	./.	0/1:107,85:29:192:0.443:2	0/1:153,43:31:196:0.219:2	./.	0/1:166,27:29:193:0.140:2
chr19	22847579	rs201599839	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,9:32:45:0.200:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22847597	rs199953047	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,6:31:40:0.150:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22847625	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,5:30:171:0.029:2	./.	./.	./.	./.
chr19	22847644	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,6:30:151:0.040:2	./.	./.	./.	./.
chr19	22848028	rs3745115	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,23:32:57:0.404:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22939096	rs55681804	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22939326	rs56115674	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:31:6:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22939540	rs62119149	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22939930	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:31:61:0.066:2	./.	./.	./.	./.	./.
chr19	22940046	rs35012661	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:30:5:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22940344	rs71357944	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,3:33:4:0.750:2	./.	./.	./.	./.	./.	./.
chr19	22940523	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.
chr19	22940554	rs12980594	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	./.	0/1:10,3:32:13:0.231:2	./.
chr19	22940694	rs62119157	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22940877	rs74455660	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,3:31:24:0.130:2	./.	./.	./.	./.	./.	./.
chr19	22940884	rs78302661	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,3:32:27:0.111:2	./.	./.	./.	./.	./.	./.
chr19	22940899	rs59017672	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	0/1:34,3:32:37:0.081:2	0/1:19,19:31:38:0.500:2	0/1:12,7:31:19:0.368:2	0/1:18,10:30:28:0.357:2	./.	./.	./.
chr19	22940980	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,5:32:162:0.031:2
chr19	22941071	rs144632185	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:30:7:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22941191	rs11667397	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,6:29:12:0.500:2	./.	0/1:6,5:29:11:0.455:2	./.	./.	./.
chr19	22941766	rs189957658	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,3:33:26:0.115:2	./.	./.	./.	./.
chr19	22942325	rs7255780	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:31:9:1.00:2	./.	./.	0/1:52,25:32:77:0.325:2	0/1:31,24:32:55:0.436:2	0/1:33,29:32:62:0.468:2	./.	./.	./.
chr19	22942335	rs61740110	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:30:11:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22952111	rs34726149	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:30:11:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	22952122	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,25:32:55:0.455:2	0/1:12,20:32:32:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	23542290	rs428549	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,13:33:26:0.500:2	./.	./.	./.	./.	0/1:19,13:33:32:0.406:2	./.	0/1:15,8:33:23:0.348:2	./.	0/1:23,16:30:39:0.410:2	0/1:12,12:32:24:0.500:2
chr19	23542291	rs385750	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,13:33:26:0.500:2	./.	./.	./.	./.	0/1:19,13:33:32:0.406:2	./.	0/1:15,8:33:23:0.348:2	./.	0/1:23,16:31:39:0.410:2	0/1:12,12:33:24:0.500:2
chr19	23542697	rs1821845	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:31:3:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,17:31:17:1.00:2	0/1:5,12:31:17:0.706:2	0/1:12,5:34:17:0.294:2	0/1:8,13:32:21:0.619:2	0/1:0,21:33:21:1.00:2	0/1:14,7:32:21:0.333:2	0/1:22,9:32:31:0.290:2
chr19	23543095	rs296093	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,25:34:51:0.490:2
chr19	23543494	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:117,4:32:121:0.033:2	./.	./.	./.	0/1:86,4:29:90:0.044:2	./.	./.	./.	./.	./.	./.
chr19	23543834	rs7255296	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,25:32:71:0.352:2	0/1:26,15:32:41:0.366:2	./.	./.	./.	0/1:25,16:32:41:0.390:2	./.	0/1:27,32:31:59:0.542:2	./.	0/1:28,20:32:48:0.417:2	./.
chr19	23543927	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,4:33:60:0.067:2	./.	./.	./.	./.	./.	0/1:44,4:30:48:0.083:2	./.
chr19	23543928	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,4:32:60:0.067:2	./.	./.	./.	./.	./.	0/1:44,4:31:48:0.083:2	./.
chr19	23544418	rs440638	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,4:31:87:0.046:2	./.	./.	./.	./.	./.	./.
chr19	23544625	rs403356	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:48,7:30:55:0.127:2	./.	./.	./.	0/1:64,7:30:71:0.099:2	./.	0/1:84,4:31:88:0.045:2	./.	0/1:48,7:30:56:0.127:2	./.
chr19	23544758	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,5:32:70:0.071:2	./.	./.	./.
chr19	23544783	rs410211	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,4:30:36:0.111:2	./.	./.	./.	./.	./.	./.	./.	0/1:45,3:32:48:0.063:2	./.	./.
chr19	23544867	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,4:31:31:0.129:2	./.	./.	./.	./.
chr19	23545004	rs296092	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,38:32:80:0.475:2	0/1:35,28:32:63:0.444:2	./.	./.	./.	0/1:55,28:32:83:0.337:2	./.	0/1:59,37:31:97:0.385:2	./.	0/1:46,26:32:72:0.361:2	0/1:67,64:32:132:0.489:2
chr19	23545250	rs1044095	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:29:4:1.00:2	0/1:1,27:30:28:0.964:2	0/1:1,23:31:24:0.958:2	0/1:15,16:29:31:0.516:2	0/1:16,8:29:24:0.333:2	0/1:6,10:29:16:0.625:2	0/1:0,24:31:24:1.00:2	0/1:30,20:30:50:0.400:2	0/1:32,14:27:46:0.304:2
chr19	23545258	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,4:26:25:0.160:2	./.	./.	./.	./.	./.	./.	./.
chr19	23545260	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,3:30:25:0.120:2	./.	./.	./.	./.	./.	./.	./.
chr19	23545447	rs296091	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,16:32:43:0.372:2
chr19	23545516	rs112713994	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:32:7:0.571:2
chr19	23556605	rs34740519	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,62:32:136:0.456:2	./.	./.	./.
chr19	23557502	rs141062920	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,50:31:96:0.521:2
chr19	23837145	rs11671053	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,26:29:66:0.394:2	0/1:15,17:28:32:0.531:2	0/1:0,3:32:3:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,35:30:35:1.00:2	0/1:1,56:28:57:0.982:2	0/1:16,26:29:42:0.619:2	0/1:25,21:30:46:0.457:2	0/1:38,34:29:72:0.472:2	0/1:50,20:31:70:0.286:2	0/1:42,44:30:87:0.512:2
chr19	23837195	rs77385655	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,49:30:106:0.462:2
chr19	23837365	rs4380159	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:32:69:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,61:31:61:1.00:2	0/1:2,78:32:80:0.975:2	0/1:0,61:32:61:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,87:32:87:1.00:2
chr19	23869823	rs2364624	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,5:33:10:0.500:2	0/1:6,3:31:9:0.333:2	0/1:1,3:33:4:0.750:2	0/1:0,23:31:23:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,14:32:14:1.00:2	0/1:17,15:32:32:0.469:2	0/1:0,19:32:19:1.00:2	0/1:7,16:29:23:0.696:2	0/1:0,22:32:22:1.00:2	0/1:2,26:32:28:0.929:2
chr19	23926708	rs1852433	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,7:33:7:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,3:34:3:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,18:34:18:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,15:32:15:1.00:2
chr19	23926916	rs1852432	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,8:33:23:0.348:2
chr19	23927252	rs1818990	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:32:21:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,33:32:33:1.00:2
chr19	23927344	rs112856587	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:33:50:0.080:2	./.	./.	./.	./.
chr19	23927345	rs7245561	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:34,36:33:70:0.514:2	0/1:21,17:32:38:0.447:2	./.	./.	./.	./.	0/1:24,25:32:50:0.510:2	./.	./.	./.	0/1:27,25:33:53:0.481:2
chr19	23927395	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:31:105:0.038:2	./.	./.	./.	./.
chr19	23927398	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:32:104:0.038:2	./.	./.	./.	./.
chr19	23927468	rs1818989	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,93:33:93:1.00:2	0/1:0,45:33:45:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,92:32:92:1.00:2	0/1:2,87:32:89:0.978:2	0/1:0,106:32:106:1.00:2	0/1:1,74:32:75:0.987:2	0/1:0,110:32:110:1.00:2	0/1:0,114:33:114:1.00:2	0/1:0,78:33:78:1.00:2	0/1:0,140:33:140:1.00:2
chr19	23928102	rs7248674	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,15:32:15:1.00:2	0/1:0,18:32:18:1.00:2	./.	0/1:0,16:32:16:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,25:33:25:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,36:32:36:1.00:2
chr19	24309561	rs73021451	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,9:32:20:0.450:2	0/1:6,4:33:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	24310032	rs61737180	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,12:32:22:0.545:2	./.	./.	./.	./.	./.	0/1:17,36:31:53:0.679:2
chr19	24310697	rs150048621	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,7:32:18:0.389:2	./.	./.	./.
chr19	29698727	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,15:30:136:0.110:2	./.	0/1:152,11:30:163:0.067:2	./.	./.	./.
chr19	29699033	.	T	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:30,6:26:36:0.167:2	0/1:13,4:27:17:0.235:2	./.	0/1:26,13:28:39:0.333:2	./.	0/1:21,4:27:25:0.160:2	./.	0/1:37,11:26:48:0.229:2	0/1:26,4:27:30:0.133:2	0/1:19,7:29:26:0.269:2	0/1:41,5:28:46:0.109:2
chr19	29704002	rs11666764	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.
chr19	29704010	rs8100724	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.
chr19	30020752	rs61731469	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:111,54:31:165:0.327:2	./.	./.	./.	./.	./.	./.
chr19	30097268	rs2303754	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,31:32:31:1.00:2	./.	0/1:49,28:31:77:0.364:2	0/1:23,19:30:42:0.452:2	0/1:52,25:31:77:0.325:2	./.	0/1:61,22:32:83:0.265:2	0/1:33,17:31:50:0.340:2	0/1:32,22:31:54:0.407:2	0/1:0,59:30:59:1.00:2
chr19	30101339	rs11556817	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:30:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	30102856	rs2288477	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,68:30:68:1.00:2	0/1:1,38:29:39:0.974:2	./.	0/1:45,37:30:82:0.451:2	0/1:52,42:29:94:0.447:2	0/1:44,41:29:85:0.482:2	./.	0/1:56,48:30:104:0.462:2	./.	./.	0/1:32,35:30:67:0.522:2
chr19	30165639	rs3745169	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:27,27:32:54:0.500:2	0/1:18,23:32:41:0.561:2	./.	./.	0/1:19,17:32:36:0.472:2	./.	./.	0/1:32,18:32:50:0.360:2	./.	./.	./.
chr19	30193721	rs10424582	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,52:32:53:0.981:2	0/1:0,17:32:17:1.00:2	0/1:0,5:33:5:1.00:2	0/1:31,37:31:68:0.544:2	0/1:1,51:32:52:0.981:2	0/1:1,84:31:85:0.988:2	0/1:41,23:32:64:0.359:2	0/1:37,42:31:79:0.532:2	0/1:0,52:33:52:1.00:2	0/1:0,65:32:65:1.00:2	0/1:17,32:31:49:0.653:2
chr19	30308385	rs3218045	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,80:32:164:0.488:2
chr19	30314634	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,6:16:28:0.214:2
chr19	30314666	rs7257694	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	0/1:17,12:32:29:0.414:2	0/1:12,10:32:22:0.455:2	./.	./.	./.	./.	0/1:15,16:32:31:0.516:2
chr19	30935704	rs61744158	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:23,17:31:40:0.425:2	0/1:16,14:32:30:0.467:2	./.	./.	0/1:35,19:32:54:0.352:2	./.	0/1:25,27:32:52:0.519:2	./.	./.	0/1:27,23:31:50:0.460:2	./.
chr19	31038995	rs1469705	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,31:30:74:0.419:2	0/1:17,35:29:52:0.673:2	0/1:58,42:30:100:0.420:2	./.	0/1:52,41:28:93:0.441:2	./.	./.	./.
chr19	31040139	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,3:35:51:0.059:2	./.	./.
chr19	31767537	rs145440380	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,79:32:169:0.467:2	0/1:65,60:32:125:0.480:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	31767966	rs143837071	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,25:33:50:0.500:2	0/1:15,15:32:30:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	31768416	rs3745784	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,49:29:97:0.505:2	0/1:38,23:31:61:0.377:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	31769763	rs12461253	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,59:30:59:1.00:2	0/1:0,31:30:31:1.00:2	0/1:7,8:31:15:0.533:2	./.	./.	0/1:20,25:29:45:0.556:2	./.	0/1:23,28:29:52:0.549:2	0/1:35,24:31:59:0.407:2	./.	./.
chr19	31770009	rs28609894	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,31:32:59:0.525:2	./.	0/1:18,17:34:35:0.486:2	./.	0/1:9,25:32:34:0.735:2
chr19	31770213	rs61742321	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,87:31:166:0.524:2	./.	./.	./.	./.	./.
chr19	31770592	rs201181883	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,9:31:24:0.375:2	./.	./.	./.	./.	./.
chr19	32873698	rs2270399	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:30:18:1.00:2	0/1:0,23:28:23:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,37:29:37:1.00:2	0/1:0,40:29:40:1.00:2	0/1:15,19:29:34:0.559:2	0/1:18,18:28:36:0.500:2	0/1:0,30:28:30:1.00:2	0/1:18,19:29:37:0.514:2	0/1:0,21:29:21:1.00:2	0/1:0,46:28:46:1.00:2
chr19	32930069	rs6510249	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:55,47:32:102:0.461:2	0/1:15,28:32:43:0.651:2	0/1:0,13:32:13:1.00:2	./.	0/1:0,60:30:60:1.00:2	0/1:28,57:31:85:0.671:2	0/1:34,53:31:87:0.609:2	0/1:1,91:31:92:0.989:2	./.	0/1:35,31:31:66:0.470:2	0/1:1,115:31:119:0.991:2
chr19	32954789	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:196,4:33:200:0.020:2	./.	./.
chr19	32955686	rs202223374	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:175,4:33:179:0.022:2	./.	./.	./.	./.	./.	./.	./.
chr19	32973077	rs7253039	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:19,15:32:34:0.441:2	0/1:14,9:33:23:0.391:2	./.	0/1:32,22:32:54:0.407:2	./.	./.	./.	./.	./.	0/1:20,23:32:43:0.535:2	./.
chr19	33090893	rs372391792	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,4:30:37:0.108:2	./.	./.	./.	./.	./.	./.
chr19	33096786	rs7247420	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,59:31:155:0.381:2	./.	0/1:115,58:32:173:0.335:2	0/1:107,67:32:174:0.385:2	./.	./.
chr19	33096816	rs7248273	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,57:31:146:0.390:2	./.	0/1:110,47:32:157:0.299:2	0/1:100,62:33:163:0.383:2	./.	./.
chr19	33098632	rs2302970	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:18,12:27:30:0.400:2	0/1:12,7:28:19:0.368:2	./.	0/1:12,9:27:21:0.429:2	./.	0/1:22,11:25:33:0.333:2	./.	0/1:9,4:29:13:0.308:2	0/1:15,7:27:22:0.318:2	0/1:0,7:22:7:1.00:2	0/1:0,9:26:9:1.00:2
chr19	33106621	rs405858	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:39,35:33:74:0.473:2	0/1:22,21:33:43:0.488:2	./.	0/1:53,42:32:95:0.442:2	./.	0/1:1,114:32:115:0.991:2	0/1:3,133:32:136:0.978:2	0/1:7,146:32:153:0.954:2	0/1:1,108:33:109:0.991:2	0/1:0,104:33:104:1.00:2	0/1:1,105:31:106:0.991:2
chr19	33110204	rs2287669	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:39,23:31:62:0.371:2	0/1:22,25:31:47:0.532:2	./.	0/1:61,55:30:116:0.474:2	./.	0/1:78,43:30:121:0.355:2	0/1:3,126:30:129:0.977:2	0/1:114,50:29:164:0.305:2	0/1:49,53:31:102:0.520:2	0/1:0,74:30:74:1.00:2	0/1:0,74:29:75:1.00:2
chr19	33117666	rs6510271	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:20,17:32:37:0.459:2	0/1:17,19:31:36:0.528:2	./.	0/1:57,25:33:82:0.305:2	./.	0/1:24,48:32:72:0.667:2	0/1:1,83:32:84:0.988:2	0/1:36,37:32:73:0.507:2	0/1:28,33:33:61:0.541:2	0/1:0,52:32:52:1.00:2	0/1:0,48:30:48:1.00:2
chr19	33119645	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:33:136:0.029:2	./.	./.	./.	./.
chr19	33131211	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:32:143:0.028:2	./.
chr19	33131212	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:33:147:0.027:2	./.
chr19	33167208	rs3826926	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	0/1:22,25:32:47:0.532:2	./.	./.	./.	./.	./.	./.
chr19	33167455	rs259290	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.
chr19	33167879	rs259291	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:5,3:32:8:0.375:2	./.	./.	0/1:3,9:30:12:0.750:2	./.	0/1:0,12:30:12:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,10:31:10:1.00:2	0/1:1,2:32:3:0.667:2	0/1:0,8:32:8:1.00:2	0/1:0,13:31:13:1.00:2
chr19	33168059	rs259292	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:37,25:29:62:0.403:2	0/1:23,16:32:39:0.410:2	./.	0/1:43,35:30:78:0.449:2	./.	0/1:2,66:30:68:0.971:2	0/1:0,72:30:72:1.00:2	0/1:1,68:30:69:0.986:2	0/1:35,37:31:72:0.514:2	0/1:0,50:30:50:1.00:2	0/1:2,72:29:75:0.973:2
chr19	33168412	rs259293	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,51:32:97:0.526:2	0/1:31,32:33:63:0.508:2	0/1:1,4:32:5:0.800:2	0/1:52,47:33:99:0.475:2	0/1:27,47:32:74:0.635:2	0/1:2,101:31:103:0.981:2	0/1:2,68:32:70:0.971:2	0/1:1,95:32:96:0.990:2	0/1:55,65:33:120:0.542:2	0/1:0,81:33:81:1.00:2	0/1:0,124:32:124:1.00:2
chr19	33169003	rs259294	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,39:31:39:1.00:2	0/1:0,27:32:27:1.00:2	./.	0/1:17,15:32:32:0.469:2	./.	0/1:1,21:32:22:0.955:2	0/1:0,16:32:16:1.00:2	0/1:3,25:31:28:0.893:2	0/1:16,13:34:29:0.448:2	0/1:0,19:33:19:1.00:2	0/1:0,49:33:49:1.00:2
chr19	33169070	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:33:54:0.074:2
chr19	33239450	rs4805805	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:9,28:30:37:0.757:2	0/1:11,14:31:25:0.560:2	0/1:0,2:31:2:1.00:2	./.	0/1:21,23:30:44:0.523:2	0/1:18,32:29:50:0.640:2	./.	0/1:3,42:30:45:0.933:2	0/1:34,19:30:53:0.358:2	0/1:0,32:30:32:1.00:2	0/1:19,18:31:37:0.486:2
chr19	33333155	rs2287881	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.	./.	./.	./.	0/1:89,4:34:93:0.043:2	0/1:42,28:33:70:0.400:2	0/1:39,24:33:63:0.381:2	./.
chr19	33353041	rs1007161	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:18,15:31:33:0.455:2	0/1:3,7:31:10:0.700:2	./.	./.	0/1:13,12:31:25:0.480:2	./.	./.	0/1:20,12:31:32:0.375:2	0/1:16,18:32:34:0.529:2	0/1:4,9:31:13:0.692:2	0/1:22,12:32:34:0.353:2
chr19	33353061	rs1007160	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:20,18:32:38:0.474:2	0/1:4,12:31:16:0.750:2	./.	./.	0/1:15,15:31:30:0.500:2	./.	./.	0/1:21,18:31:39:0.462:2	0/1:17,20:32:37:0.541:2	0/1:6,14:32:20:0.700:2	0/1:22,17:32:39:0.436:2
chr19	33353464	rs11084673	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:21,18:32:40:0.462:2	0/1:23,12:31:35:0.343:2	0/1:0,5:31:5:1.00:2	./.	0/1:58,34:30:92:0.370:2	./.	0/1:111,4:32:115:0.035:2	0/1:76,38:30:114:0.333:2	0/1:33,27:31:60:0.450:2	0/1:25,26:31:51:0.510:2	0/1:32,25:30:57:0.439:2
chr19	33355055	rs12150889	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:39,42:29:81:0.519:2	0/1:27,26:28:53:0.491:2	0/1:0,18:29:18:1.00:2	./.	0/1:63,48:29:111:0.432:2	./.	./.	0/1:88,60:29:148:0.405:2	0/1:62,39:30:101:0.386:2	0/1:45,29:30:74:0.392:2	0/1:44,29:28:74:0.397:2
chr19	33355069	rs12150890	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:38,43:29:81:0.531:2	0/1:31,28:29:59:0.475:2	./.	./.	./.	./.	./.	0/1:93,58:29:151:0.384:2	./.	./.	0/1:50,26:28:76:0.342:2
chr19	33355081	rs35170371	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,16:32:16:1.00:2	./.	0/1:62,49:32:111:0.441:2	./.	./.	./.	0/1:60,38:33:98:0.388:2	0/1:41,29:33:70:0.414:2	./.
chr19	33370070	rs745961	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,25:31:25:1.00:2	0/1:0,11:33:11:1.00:2	./.	./.	./.	./.	0/1:0,30:32:30:1.00:2	0/1:23,4:33:27:0.148:2	./.	./.	0/1:0,36:33:36:1.00:2
chr19	33370084	rs745960	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,24:30:24:1.00:2	0/1:0,15:32:15:1.00:2	./.	./.	./.	./.	0/1:0,29:29:29:1.00:2	0/1:26,4:32:30:0.133:2	./.	./.	0/1:0,36:30:36:1.00:2
chr19	33370161	rs745959	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:1,44:31:45:0.978:2	0/1:0,30:32:30:1.00:2	./.	./.	./.	./.	0/1:0,30:31:30:1.00:2	0/1:42,7:33:49:0.143:2	./.	./.	0/1:0,51:31:51:1.00:2
chr19	33390796	rs10418340	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,59:31:117:0.504:2	0/1:32,38:32:70:0.543:2	0/1:0,2:30:2:1.00:2	0/1:0,84:30:84:1.00:2	0/1:0,83:30:83:1.00:2	0/1:0,88:30:88:1.00:2	0/1:0,99:30:99:1.00:2	0/1:90,61:30:151:0.404:2	0/1:0,127:31:127:1.00:2	0/1:0,114:31:114:1.00:2	0/1:78,52:31:130:0.400:2
chr19	33392223	rs148506114	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,71:33:150:0.473:2	0/1:54,53:33:107:0.495:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	33414420	rs4805825	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,65:33:143:0.458:2	./.	0/1:79,40:31:119:0.336:2	./.	0/1:80,71:33:151:0.470:2	./.
chr19	33430746	rs73051180	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:17,11:31:28:0.393:2	./.	./.	./.	./.	./.	0/1:2,18:31:20:0.900:2	./.	./.	./.	0/1:22,25:30:47:0.532:2
chr19	33430816	rs12461782	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,20:33:20:1.00:2	0/1:0,11:33:11:1.00:2	0/1:16,15:32:31:0.484:2	./.	./.	0/1:0,20:34:20:1.00:2	0/1:0,18:33:18:1.00:2	./.
chr19	33439187	rs3764633	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:31:5:0.800:2	./.	0/1:19,12:31:31:0.387:2	./.	./.	./.	0/1:21,10:32:31:0.323:2	0/1:16,6:31:22:0.273:2	./.
chr19	33444707	rs10411735	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:32:7:0.429:2	0/1:0,52:31:52:1.00:2	0/1:28,18:31:46:0.391:2	0/1:22,31:31:53:0.585:2	./.	./.	0/1:35,51:32:86:0.593:2	0/1:24,27:31:51:0.529:2	./.
chr19	33467357	rs2304102	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,30:30:30:1.00:2	0/1:14,12:30:26:0.462:2	0/1:15,17:31:32:0.531:2	./.	./.	0/1:22,17:30:39:0.436:2	0/1:18,18:31:36:0.500:2	./.
chr19	33467515	rs3816032	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,25:31:76:0.329:2	./.	0/1:58,42:32:100:0.420:2	./.	./.	./.
chr19	33467576	rs7258185	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,7:30:15:0.467:2	0/1:0,64:31:64:1.00:2	0/1:30,14:31:44:0.318:2	0/1:24,19:31:43:0.442:2	./.	./.	0/1:23,33:32:56:0.589:2	./.	./.
chr19	33470966	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,6:31:196:0.031:2	./.	./.	./.	./.	./.	0/1:190,5:32:195:0.026:2	0/1:181,7:31:188:0.037:2
chr19	33481509	rs111491211	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,6:30:146:0.041:2	./.	0/1:162,5:33:167:0.030:2	./.	0/1:144,6:33:150:0.040:2	./.
chr19	33482821	rs79314177	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,63:32:147:0.429:2	./.	./.	./.
chr19	33484872	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:33:52:0.077:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	33487017	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:30:109:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	33487071	rs12610600	G	C,T	.	PASS	AC=5,1;AF=0.278,0.056;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:BQ:DP:FA:SS	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	./.	0/1:28:110:0.427:2	0/1:28:113:0.955:2	0/1:28:120:0.513:2	./.	0/2:31:142:0.549:2	0/1:28:111:0.387:2	0/1:27:102:0.961:2	./.
chr19	33490500	rs201438314	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:129,11:30:141:0.079:2	0/1:152,8:30:160:0.050:2	./.	0/1:142,10:31:152:0.066:2	0/1:158,11:28:169:0.065:2	0/1:149,24:31:173:0.139:2	0/1:158,7:32:165:0.042:2	0/1:157,15:29:172:0.087:2	0/1:173,5:32:178:0.028:2	0/1:140,12:30:153:0.079:2	0/1:151,9:31:160:0.056:2
chr19	33490517	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,17:32:177:0.096:2	./.
chr19	33490564	rs147870656	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,14:31:197:0.071:2	./.	./.	./.	0/1:167,25:32:192:0.130:2	./.
chr19	33490566	rs201801079	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:135,56:28:191:0.293:2	0/1:133,54:28:188:0.289:2	0/1:79,36:29:115:0.313:2	0/1:167,28:28:195:0.144:2	0/1:141,55:29:196:0.281:2	0/1:139,57:29:196:0.291:2	0/1:128,64:30:192:0.333:2	0/1:170,28:29:198:0.141:2	0/1:130,69:30:199:0.347:2	0/1:122,68:29:190:0.358:2	0/1:125,72:28:197:0.365:2
chr19	33490585	rs78615454	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:155,37:32:192:0.193:2	0/1:141,43:32:184:0.234:2	0/1:90,20:32:110:0.182:2	0/1:144,53:32:197:0.269:2	0/1:175,20:32:195:0.103:2	0/1:169,24:32:193:0.124:2	0/1:163,33:32:196:0.168:2	0/1:154,41:32:195:0.210:2	0/1:175,21:31:196:0.107:2	0/1:143,44:32:187:0.235:2	0/1:167,24:32:191:0.126:2
chr19	33493722	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,3:35:28:0.107:2
chr19	33493767	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,4:33:34:0.118:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	33493808	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:30:74:0.054:2	./.	./.	./.	./.
chr19	33493830	rs74453945	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:27,9:32:36:0.250:2	./.	0/1:64,5:31:69:0.072:2	0/1:57,6:29:63:0.095:2	./.	0/1:61,15:31:76:0.197:2	0/1:61,5:31:66:0.076:2	./.	0/1:50,13:33:63:0.206:2	0/1:67,12:30:79:0.152:2
chr19	33493842	rs137892450	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:30,3:32:33:0.091:2	./.	./.	./.	./.	0/1:72,11:32:83:0.133:2	./.	./.	0/1:57,6:32:63:0.095:2	0/1:65,8:31:73:0.110:2
chr19	33498978	rs2163807	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,21:30:40:0.525:2	0/1:17,12:29:29:0.414:2	./.	0/1:40,31:30:71:0.437:2	0/1:44,43:30:87:0.494:2	./.	0/1:47,42:30:89:0.472:2	0/1:32,51:29:83:0.614:2	0/1:25,21:29:46:0.457:2	0/1:0,48:30:48:1.00:2	0/1:29,31:31:60:0.517:2
chr19	33499071	rs10410414	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,9:33:19:0.474:2	./.	./.	0/1:20,16:33:36:0.444:2	0/1:5,2:37:7:0.286:2	0/1:4,7:33:11:0.636:2	./.
chr19	33503576	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,4:32:122:0.033:2	./.	0/1:163,4:31:167:0.024:2	./.	./.	./.	./.	./.
chr19	33503577	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,4:33:120:0.033:2	./.	0/1:164,4:32:168:0.024:2	./.	./.	./.	./.	./.
chr19	33517507	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,5:26:14:0.357:2	./.	./.	./.	./.	./.	./.
chr19	33517515	rs28626308	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,10:32:19:0.526:2	./.	./.	./.
chr19	33517525	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,4:32:13:0.308:2	./.	./.	./.	./.	./.	./.
chr19	33572089	rs28372855	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,16:30:35:0.457:2	./.	./.
chr19	33579128	rs7259333	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,35:29:71:0.493:2	./.	./.	./.	0/1:37,38:31:75:0.507:2	0/1:42,45:31:87:0.517:2	./.	./.
chr19	33586739	rs13345542	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,23:32:39:0.590:2	./.	./.	./.	0/1:21,17:33:38:0.447:2	0/1:8,20:33:28:0.714:2	./.	./.
chr19	33592487	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	33600764	rs2287679	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,27:31:51:0.529:2	./.	./.	./.	0/1:24,20:31:44:0.455:2	0/1:30,16:32:46:0.348:2	./.	./.
chr19	33602757	rs10420258	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,60:33:105:0.571:2	./.	./.
chr19	33605300	rs10416265	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,13:28:48:0.271:2	./.	./.	./.	0/1:18,12:29:30:0.400:2	0/1:27,6:32:33:0.182:2	./.	./.
chr19	33605312	rs10421769	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,14:34:47:0.298:2	./.	0/1:33,23:32:56:0.411:2	./.	0/1:15,13:33:28:0.464:2	0/1:0,28:33:28:1.00:2	./.	./.
chr19	33608733	rs2287681	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,34:32:59:0.576:2	./.	./.	0/1:0,48:33:48:1.00:2	./.	./.
chr19	33617583	rs6510356	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,5:31:22:0.227:2	./.	./.	./.	0/1:13,14:32:27:0.519:2	./.	./.	./.
chr19	33635761	rs3848596	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,86:31:185:0.465:2	./.	./.	0/1:105,83:32:188:0.441:2	0/1:100,81:31:181:0.448:2	0/1:99,79:32:178:0.444:2	./.	./.
chr19	33638539	rs7249216	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,53:30:133:0.402:2	0/1:53,47:32:100:0.470:2	./.	./.
chr19	33655144	rs1981827	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,49:30:123:0.398:2	./.	./.	./.	./.
chr19	33693785	rs1056034	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,22:32:55:0.400:2	./.	./.	./.	./.
chr19	33696621	rs3745975	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,23:31:35:0.657:2	./.	./.	./.	./.
chr19	33696897	rs11084712	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,11:27:17:0.647:2	0/1:3,4:32:7:0.571:2	./.	0/1:5,4:31:9:0.444:2	./.	./.
chr19	33697546	rs1056041	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,56:31:126:0.444:2	./.	./.	./.	./.
chr19	33698291	rs3745974	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:34:11:1.00:2	0/1:0,12:33:12:1.00:2	./.	./.	0/1:0,6:32:6:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,3:34:3:1.00:2	0/1:2,2:35:4:0.500:2	./.	0/1:0,11:34:11:1.00:2	./.
chr19	33698448	rs3745973	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,15:32:15:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr19	33700281	rs2303094	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,19:32:45:0.422:2	./.	./.	./.	./.
chr19	33701478	rs150600610	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	33703888	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:32:104:0.038:2
chr19	33792631	rs34529039	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	33872410	rs3745968	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,7:32:15:0.467:2	./.	0/1:12,6:32:18:0.333:2	./.	./.	./.
chr19	33873199	rs14093	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,10:31:28:0.357:2	./.	./.
chr19	33873371	rs76648333	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,40:31:121:0.331:2	./.	./.
chr19	33873435	rs2772	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,11:30:18:0.611:2	./.	0/1:36,49:33:85:0.576:2	./.	./.	./.	./.	./.	0/1:2,157:33:159:0.987:2
chr19	33878837	rs17570	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,20:32:37:0.541:2	0/1:16,19:32:35:0.543:2	0/1:1,4:30:5:0.800:2	0/1:19,12:32:31:0.387:2	./.	0/1:20,15:31:35:0.429:2	./.	0/1:28,24:31:52:0.462:2	0/1:11,15:34:26:0.577:2	0/1:18,8:32:26:0.308:2	./.
chr19	33882222	rs17569	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,51:32:114:0.447:2	./.	./.	0/1:43,29:32:72:0.403:2	./.
chr19	33902652	rs74988985	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,21:30:50:0.420:2	0/1:9,9:29:18:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	33953912	rs3745969	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,69:30:117:0.590:2	./.	./.
chr19	34302280	rs10426916	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,12:32:18:0.667:2	./.	./.	0/1:4,6:30:10:0.600:2	./.	./.	./.	./.
chr19	34303802	rs141966235	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,22:29:57:0.386:2	./.	./.	./.	./.	./.	./.
chr19	34687628	rs190334933	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:85,69:31:154:0.448:2	./.	./.	./.	./.	./.	./.
chr19	34710728	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:31:119:0.034:2	./.	./.
chr19	34712526	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:35:191:0.021:2	./.	./.
chr19	34832747	rs35577851	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,42:32:87:0.483:2	./.	./.	./.	./.	./.
chr19	34842488	rs392340	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,13:29:35:0.371:2	0/1:13,14:29:27:0.519:2	./.	0/1:21,19:28:40:0.475:2	0/1:49,24:29:73:0.329:2	./.	0/1:37,25:30:62:0.403:2	0/1:0,67:29:67:1.00:2	./.	0/1:1,36:29:37:0.973:2	./.
chr19	34843761	rs397414	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,25:31:38:0.658:2	0/1:5,20:31:25:0.800:2	0/1:1,10:30:11:0.909:2	0/1:6,34:30:40:0.850:2	0/1:16,49:30:65:0.754:2	./.	0/1:14,36:30:50:0.720:2	0/1:1,97:31:99:0.990:2	./.	0/1:1,44:30:45:0.978:2	0/1:7,18:31:25:0.720:2
chr19	34843765	rs144560149	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,7:23:19:0.368:2	./.	./.	./.	./.	./.
chr19	34857324	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:31:161:0.025:2	./.	./.	./.	./.	./.
chr19	34868642	rs1801015	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,12:32:35:0.343:2	./.	./.	./.	./.
chr19	34868756	rs1062480	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,14:29:37:0.378:2	0/1:13,10:28:23:0.435:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	34872382	rs1864139	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,26:32:70:0.371:2	./.	./.	./.
chr19	34895619	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,4:33:28:0.143:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	34904675	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,4:31:23:0.174:2	./.	./.
chr19	34922801	rs148322312	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:33:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	34957830	rs45482396	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,35:33:50:0.700:2	./.	./.	./.	./.	./.	./.
chr19	34959979	rs7259160	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,35:31:35:1.00:2	0/1:0,9:29:9:1.00:2	./.	0/1:0,25:30:25:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,25:29:25:1.00:2	0/1:7,8:28:15:0.533:2	0/1:10,24:30:34:0.706:2	0/1:0,28:30:28:1.00:2	0/1:0,37:31:37:1.00:2	0/1:1,42:29:43:0.977:2
chr19	34985466	rs11671685	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:55,41:32:96:0.427:2	0/1:34,31:32:65:0.477:2	0/1:9,4:31:13:0.308:2	0/1:2,134:31:136:0.985:2	0/1:74,48:31:122:0.393:2	0/1:86,59:31:145:0.407:2	0/1:99,55:31:154:0.357:2	./.	0/1:1,165:32:166:0.994:2	./.	0/1:70,79:31:149:0.530:2
chr19	35173717	rs199664059	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,46:33:199:0.231:2	./.	0/1:162,30:31:192:0.156:2
chr19	35175208	rs2290652	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:43,48:33:91:0.527:2	0/1:20,37:33:57:0.649:2	./.	./.	0/1:0,62:33:62:1.00:2	./.	./.	0/1:31,38:32:69:0.551:2	./.	0/1:0,88:33:88:1.00:2	./.
chr19	35175359	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:144,5:26:149:0.034:2	./.	./.	./.	./.	./.	./.
chr19	35175493	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,4:27:47:0.085:2	./.	./.	0/1:49,5:33:54:0.093:2	./.	./.	./.	./.
chr19	35175498	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,4:32:47:0.085:2	./.	./.	0/1:50,5:31:55:0.091:2	./.	0/1:42,3:34:45:0.067:2	./.	./.
chr19	35175592	rs10425561	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,13:30:60:0.217:2	./.	./.
chr19	35175749	rs10401309	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,52:33:106:0.491:2	./.	./.
chr19	35175775	rs11543232	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:47,39:31:86:0.453:2	0/1:31,21:32:52:0.404:2	./.	./.	0/1:0,64:31:64:1.00:2	./.	./.	0/1:62,70:31:132:0.530:2	./.	0/1:1,78:31:80:0.987:2	./.
chr19	35231616	rs140446885	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,17:31:41:0.415:2	./.	./.	./.	./.	./.
chr19	35231811	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:33:68:0.059:2	./.	./.	./.	./.
chr19	35231945	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,3:32:43:0.070:2	./.	./.	./.	./.	./.	./.
chr19	35231950	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,3:33:46:0.065:2	./.	./.	./.	./.	./.	./.
chr19	35232638	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,6:31:189:0.032:2
chr19	35232677	rs61739988	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,74:31:182:0.407:2	./.	./.	./.	./.	./.
chr19	35232845	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,5:32:106:0.047:2
chr19	35232946	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,10:33:123:0.081:2
chr19	35232952	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,9:33:117:0.077:2
chr19	35232985	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:32:81:0.049:2	./.	./.	./.	./.	./.
chr19	35232987	rs61730458	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:32:13:0.538:2	./.	0/1:21,25:32:46:0.543:2	./.	./.	./.	./.	./.	./.
chr19	35250702	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:32:96:0.042:2	./.
chr19	35251080	rs73591309	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,61:33:132:0.462:2	./.	./.
chr19	35260442	rs117610843	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,15:30:30:0.500:2	./.
chr19	35420841	rs2546001	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,105:33:106:0.991:2	0/1:0,45:32:45:1.00:2	0/1:0,11:31:11:1.00:2	./.	0/1:0,72:32:72:1.00:2	0/1:0,89:32:89:1.00:2	0/1:33,31:33:64:0.484:2	./.	0/1:68,54:34:122:0.443:2	0/1:39,46:33:85:0.541:2	0/1:78,60:34:138:0.435:2
chr19	35422808	rs10422961	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,42:31:87:0.483:2	0/1:0,84:31:84:1.00:2	0/1:38,37:31:75:0.493:2	./.	./.	./.	./.
chr19	35434238	rs1811	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,54:30:54:1.00:2	0/1:0,23:28:23:1.00:2	0/1:0,3:27:3:1.00:2	./.	0/1:2,44:30:46:0.957:2	0/1:0,58:29:58:1.00:2	0/1:15,17:30:32:0.531:2	./.	0/1:28,23:29:51:0.451:2	./.	0/1:35,32:29:67:0.478:2
chr19	35434448	rs62122088	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,34:32:75:0.453:2	0/1:58,61:32:119:0.513:2	./.	./.	./.	./.	./.
chr19	35434512	rs2651109	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,70:30:71:0.986:2	0/1:0,43:28:43:1.00:2	0/1:0,4:30:4:1.00:2	./.	0/1:0,43:30:43:1.00:2	0/1:0,57:29:57:1.00:2	0/1:25,31:29:56:0.554:2	./.	0/1:26,32:30:58:0.552:2	./.	0/1:48,37:30:86:0.435:2
chr19	35434582	rs142299823	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,15:32:39:0.385:2	./.	./.	./.	./.	./.	./.
chr19	35434648	rs145945527	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,33:34:70:0.471:2	./.	./.
chr19	35435006	rs1345658	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,82:31:82:1.00:2	0/1:1,39:32:40:0.975:2	0/1:0,14:30:14:1.00:2	./.	0/1:0,94:31:94:1.00:2	0/1:0,100:30:100:1.00:2	0/1:69,65:30:134:0.485:2	./.	0/1:70,54:32:124:0.435:2	./.	0/1:56,55:31:111:0.495:2
chr19	35435069	rs765746	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:4,101:33:105:0.962:2	0/1:1,46:32:47:0.979:2	0/1:2,17:33:19:0.895:2	./.	0/1:64,50:31:114:0.439:2	./.	./.	./.	./.	./.	0/1:65,62:32:127:0.488:2
chr19	35435539	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,4:33:53:0.075:2	./.	./.	./.	./.	./.	./.	./.
chr19	35435589	rs3761066	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,45:33:45:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,6:31:6:1.00:2	./.	0/1:10,17:32:27:0.630:2	./.	./.	./.	./.	./.	0/1:37,38:32:75:0.507:2
chr19	35449082	rs3746243	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:3,100:30:103:0.971:2	0/1:1,73:31:74:0.986:2	0/1:0,20:30:20:1.00:2	./.	0/1:83,98:30:181:0.541:2	./.	./.	./.	./.	./.	0/1:63,103:31:166:0.620:2
chr19	35449409	rs2651081	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,54:32:113:0.478:2	0/1:0,85:31:85:1.00:2	0/1:61,61:31:122:0.500:2	./.	0/1:55,56:32:111:0.505:2	./.	./.
chr19	35449486	rs34687332	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,52:31:90:0.578:2	./.	./.	./.	./.
chr19	35449760	rs2651080	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,15:29:58:0.259:2	0/1:0,92:30:92:1.00:2	0/1:36,33:30:69:0.478:2	./.	0/1:58,32:31:90:0.356:2	./.	./.
chr19	35450036	rs115485454	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,51:29:104:0.490:2
chr19	35450111	rs35715851	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,57:30:132:0.432:2	./.	./.	./.	./.	./.
chr19	35450229	rs2651079	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,182:33:183:0.995:2	0/1:4,123:32:127:0.969:2	0/1:0,38:32:38:1.00:2	0/1:188,8:33:197:0.041:2	0/1:0,188:32:188:1.00:2	0/1:1,181:32:182:0.995:2	0/1:107,88:33:195:0.451:2	./.	0/1:99,95:33:194:0.490:2	./.	0/1:110,84:33:194:0.433:2
chr19	35501051	rs2290642	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,27:30:27:1.00:2	0/1:0,13:28:13:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	35504510	rs182927749	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,16:31:39:0.410:2	./.	./.	./.	./.	./.	./.	./.
chr19	35506729	rs17851095	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,30:32:75:0.400:2	0/1:45,39:31:84:0.464:2	0/1:46,33:31:79:0.418:2	0/1:53,29:32:82:0.354:2	0/1:46,35:32:81:0.432:2	./.	0/1:29,24:32:53:0.453:2	./.
chr19	35510102	rs2290646	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,28:31:55:0.509:2	0/1:23,12:32:35:0.343:2	0/1:1,5:33:6:0.833:2	0/1:42,43:32:85:0.506:2	0/1:66,55:32:121:0.455:2	0/1:71,41:32:112:0.366:2	0/1:82,58:32:140:0.414:2	0/1:70,66:32:136:0.485:2	./.	0/1:28,25:32:53:0.472:2	./.
chr19	35512707	rs138099889	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2
chr19	35524824	rs55742440	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,28:32:44:0.636:2	0/1:14,11:31:25:0.440:2	0/1:3,5:32:8:0.625:2	0/1:19,9:32:28:0.321:2	0/1:26,16:32:42:0.381:2	0/1:17,23:32:40:0.575:2	0/1:11,18:31:29:0.621:2	0/1:24,18:32:42:0.429:2	./.	0/1:2,26:32:28:0.929:2	./.
chr19	35524939	rs67701503	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,82:31:192:0.427:2	./.	./.	./.	0/1:120,80:31:200:0.400:2	./.	0/1:89,98:32:187:0.524:2	./.
chr19	35524944	rs67486287	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,89:30:198:0.449:2	./.	./.	./.	0/1:117,82:30:199:0.412:2	./.	0/1:90,97:30:187:0.519:2	./.
chr19	35530073	rs16969930	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,96:31:193:0.497:2	./.	./.
chr19	35550878	rs45512696	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,6:28:13:0.462:2	0/1:39,34:30:74:0.466:2	./.	0/1:32,32:28:64:0.500:2	0/1:33,31:29:65:0.484:2	./.	0/1:42,34:30:76:0.447:2	./.	./.
chr19	35610245	rs2278994	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:27:52:1.00:2	0/1:0,33:27:33:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,71:28:71:1.00:2	0/1:0,85:27:85:1.00:2	0/1:0,65:27:65:1.00:2	0/1:0,64:27:64:1.00:2	0/1:2,63:28:65:0.969:2	0/1:31,30:28:61:0.492:2	0/1:0,51:27:51:1.00:2	0/1:39,11:26:50:0.220:2
chr19	35610288	rs62120434	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,49:33:111:0.450:2	./.	./.
chr19	35612159	rs2290649	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:30:10:1.00:2	0/1:32,40:28:72:0.556:2	0/1:31,28:29:59:0.475:2	0/1:36,49:28:85:0.576:2	./.	./.	0/1:59,45:30:104:0.433:2	./.	./.
chr19	35612168	rs1688016	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,61:31:61:1.00:2	0/1:0,24:32:24:1.00:2	./.	0/1:43,22:30:65:0.338:2	0/1:30,25:29:55:0.455:2	0/1:53,32:30:85:0.376:2	0/1:40,21:30:62:0.344:2	0/1:3,59:30:63:0.952:2	./.	0/1:40,28:31:68:0.412:2	./.
chr19	35614336	rs1672974	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,65:32:65:1.00:2	0/1:1,85:32:86:0.988:2	0/1:0,79:32:79:1.00:2	0/1:58,42:32:100:0.420:2	0/1:0,94:32:94:1.00:2	0/1:45,46:33:91:0.505:2	0/1:52,37:32:89:0.416:2	./.
chr19	35616315	rs12610146	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,57:31:57:1.00:2	0/1:0,35:30:35:1.00:2	./.	0/1:30,58:30:88:0.659:2	0/1:56,65:30:121:0.537:2	0/1:41,69:31:110:0.627:2	0/1:29,61:29:90:0.678:2	0/1:1,166:30:167:0.994:2	./.	0/1:25,18:30:43:0.419:2	./.
chr19	35616316	rs12610234	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,57:31:57:1.00:2	0/1:0,35:31:35:1.00:2	./.	0/1:30,58:30:88:0.659:2	0/1:56,65:30:121:0.537:2	0/1:41,69:30:110:0.627:2	0/1:30,61:30:91:0.670:2	0/1:1,166:30:167:0.994:2	./.	0/1:27,18:30:45:0.400:2	./.
chr19	35617270	rs1319969	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,29:25:29:1.00:2	0/1:0,15:26:15:1.00:2	./.	0/1:22,18:27:40:0.450:2	0/1:27,17:24:44:0.386:2	0/1:20,29:26:49:0.592:2	0/1:25,18:28:43:0.419:2	0/1:2,59:27:61:0.967:2	./.	0/1:13,11:27:24:0.458:2	./.
chr19	35617639	rs1687998	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:33:7:1.00:2	./.	./.	./.	./.	0/1:3,2:35:5:0.400:2	./.	0/1:0,8:33:8:1.00:2	./.	./.	./.
chr19	35622695	rs1673007	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:28:77:1.00:2	0/1:0,35:28:35:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,86:29:86:1.00:2	0/1:0,69:27:69:1.00:2	0/1:0,100:28:100:1.00:2	0/1:0,89:28:89:1.00:2	0/1:0,86:28:86:1.00:2	0/1:0,84:30:84:1.00:2	0/1:0,73:28:73:1.00:2	0/1:0,92:28:92:1.00:2
chr19	35624994	rs35849647	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,28:31:64:0.438:2
chr19	35633601	rs149407483	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,39:32:86:0.453:2	./.	./.	./.	./.
chr19	35642325	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:146,5:28:151:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr19	35642380	rs141725524	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,8:29:17:0.471:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	35644855	rs62111370	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,4:27:12:0.333:2	./.	0/1:9,7:27:16:0.438:2	./.	./.	./.	./.	./.
chr19	35648365	rs1688005	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:29:6:1.00:2	./.	0/1:11,16:29:27:0.593:2	./.	0/1:0,37:31:37:1.00:2	./.	./.	./.	./.
chr19	35649269	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:33:110:0.036:2	./.	./.
chr19	35649281	rs1128882	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,66:30:66:1.00:2	0/1:2,31:30:33:0.939:2	./.	./.	./.	./.	./.	./.	0/1:45,38:31:83:0.458:2	0/1:24,37:30:61:0.607:2	./.
chr19	35649324	rs1633915	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,39:33:39:1.00:2	0/1:13,23:32:36:0.639:2	0/1:23,15:34:38:0.395:2	0/1:8,18:31:26:0.692:2	0/1:29,25:32:54:0.463:2
chr19	35660450	rs2285515	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,30:32:77:0.390:2	0/1:52,31:32:83:0.373:2	0/1:0,76:32:76:1.00:2	./.	0/1:62,31:33:93:0.333:2	./.	0/1:40,25:31:66:0.385:2	0/1:46,37:33:83:0.446:2
chr19	35660508	rs12110	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:31:36:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,67:31:67:1.00:2	0/1:50,19:30:69:0.275:2	0/1:28,29:32:57:0.509:2	0/1:0,45:32:45:1.00:2	0/1:33,24:30:57:0.421:2
chr19	35718891	rs35001809	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,73:30:194:0.376:2	./.	./.	./.	./.	./.
chr19	35718938	rs564117	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,65:32:136:0.478:2	0/1:56,40:32:96:0.417:2	./.	./.	./.	0/1:112,73:31:185:0.395:2	./.	./.	./.	0/1:106,76:32:182:0.418:2	./.
chr19	35719020	rs541169	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:37,35:30:72:0.486:2	0/1:30,26:32:56:0.464:2	./.	0/1:61,45:30:106:0.425:2	0/1:47,32:30:79:0.405:2	0/1:55,24:30:79:0.304:2	./.	./.	0/1:43,36:32:79:0.456:2	0/1:1,52:31:53:0.981:2	./.
chr19	35719106	rs565791	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,26:29:50:0.520:2	0/1:18,17:29:35:0.486:2	0/1:3,3:30:6:0.500:2	0/1:1,68:29:70:0.986:2	0/1:25,22:30:47:0.468:2	0/1:0,53:29:53:1.00:2	0/1:1,46:29:48:0.979:2	0/1:42,44:29:86:0.512:2	0/1:1,47:29:48:0.979:2	0/1:1,54:28:55:0.982:2	0/1:36,40:28:76:0.526:2
chr19	35719257	rs11673347	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,27:32:66:0.409:2	0/1:28,15:31:43:0.349:2	0/1:6,4:32:10:0.400:2	0/1:48,39:31:87:0.448:2	./.	0/1:0,68:30:68:1.00:2	0/1:2,52:31:54:0.963:2	0/1:49,52:32:101:0.515:2	0/1:58,44:33:102:0.431:2	0/1:54,31:31:85:0.365:2	0/1:59,41:31:100:0.410:2
chr19	35719577	rs34873156	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:31:8:1.00:2	0/1:19,11:31:30:0.367:2	./.	0/1:8,13:30:21:0.619:2	0/1:1,42:30:43:0.977:2	0/1:22,17:31:39:0.436:2	0/1:14,9:33:24:0.391:2	./.	0/1:21,13:31:34:0.382:2
chr19	35741456	rs2073900	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,49:30:49:1.00:2	0/1:1,30:30:31:0.968:2	./.	0/1:29,32:31:61:0.525:2	0/1:40,19:29:59:0.322:2	0/1:0,67:30:67:1.00:2	0/1:3,35:30:38:0.921:2	0/1:4,62:31:66:0.939:2	0/1:31,34:30:65:0.523:2	0/1:28,24:31:52:0.462:2	0/1:16,26:31:42:0.619:2
chr19	35753510	rs141619202	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,74:31:164:0.451:2	./.	./.	./.
chr19	35757427	rs34259399	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,14:31:42:0.333:2	./.	./.	./.	0/1:17,20:32:37:0.541:2	0/1:16,11:32:27:0.407:2	./.
chr19	35760322	rs368002921	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.
chr19	35770064	rs2280747	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,12:33:23:0.522:2	0/1:11,6:28:17:0.353:2	./.	./.	./.	0/1:24,12:33:36:0.333:2	./.	./.	./.	0/1:18,13:32:31:0.419:2	./.
chr19	35786868	rs2301600	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	0/1:34,11:31:45:0.244:2	./.	0/1:35,20:32:55:0.364:2	0/1:28,20:32:48:0.417:2	./.	0/1:17,13:30:30:0.433:2	./.
chr19	35790503	rs3746248	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,10:31:19:0.526:2	0/1:0,119:32:119:1.00:2	0/1:70,64:31:134:0.478:2	0/1:80,56:32:136:0.412:2	0/1:58,53:32:111:0.477:2	./.	0/1:52,50:33:102:0.490:2	./.	0/1:23,29:31:52:0.558:2
chr19	35793589	rs1126770	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:14,26:33:40:0.650:2	0/1:8,10:31:18:0.556:2	./.	./.	0/1:22,27:32:49:0.551:2	./.	./.	0/1:0,61:32:61:1.00:2	0/1:11,27:33:38:0.711:2	./.	./.
chr19	35831986	rs25677	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,13:31:17:0.765:2	0/1:32,56:31:88:0.636:2	./.	./.	./.	./.	0/1:56,53:31:110:0.486:2	./.	./.
chr19	35835739	rs7259477	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,21:33:45:0.467:2	./.	./.
chr19	35835940	rs45453699	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:18,23:32:41:0.561:2	0/1:12,6:31:18:0.333:2	./.	./.	./.	./.	./.	0/1:25,15:32:40:0.375:2	0/1:19,30:32:49:0.612:2	./.	./.
chr19	35836530	rs10406069	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,37:30:54:0.685:2	0/1:10,22:31:32:0.688:2	0/1:30,22:29:52:0.423:2	./.	./.	./.	./.	./.
chr19	35836600	rs34826052	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,20:32:64:0.313:2	./.	./.	./.	./.
chr19	35843086	rs2301151	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,3:28:3:1.00:2	0/1:0,7:31:7:1.00:2	./.	0/1:7,3:28:10:0.300:2	0/1:0,8:30:8:1.00:2	0/1:0,7:29:7:1.00:2	0/1:2,5:29:7:0.714:2	0/1:0,12:31:12:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,7:31:8:1.00:2	0/1:0,3:30:3:1.00:2
chr19	35849813	rs146397125	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:159,36:32:195:0.185:2	0/1:129,66:32:195:0.338:2	./.	./.	./.	./.	./.
chr19	35849926	rs79251979	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,99:29:171:0.579:2	./.	0/1:3,78:28:81:0.963:2	0/1:42,138:29:182:0.767:2	./.	0/1:99,90:29:189:0.476:2	0/1:82,91:29:174:0.526:2
chr19	35850022	rs149009291	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,93:32:177:0.525:2	0/1:57,68:32:125:0.544:2	./.	./.	./.	0/1:155,35:33:190:0.184:2	./.	0/1:144,51:32:195:0.262:2	./.	0/1:148,35:31:184:0.191:2	./.
chr19	35850152	rs145076130	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,102:32:190:0.537:2	0/1:74,79:31:153:0.516:2	./.	./.	./.	0/1:150,42:32:192:0.219:2	./.	0/1:145,50:32:195:0.256:2	./.	0/1:149,43:32:193:0.224:2	./.
chr19	35850190	rs144435503	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:143,53:30:196:0.270:2	./.	./.	./.	./.	./.	./.
chr19	35850257	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,58:30:196:0.296:2	./.	./.
chr19	35850408	rs138920343	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,37:32:117:0.316:2	./.
chr19	35850471	.	T	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:175,9:25:184:0.049:2	0/1:174,16:31:190:0.084:2	./.	./.	./.	0/1:170,18:29:188:0.096:2	0/1:173,22:31:195:0.113:2	0/1:179,17:31:196:0.087:2	./.	0/1:177,15:24:193:0.078:2	./.
chr19	35850560	rs77988018	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,93:31:192:0.484:2	0/1:102,93:32:195:0.477:2	./.	./.	./.	0/1:140,54:32:194:0.278:2	./.	0/1:154,42:32:196:0.214:2	./.	0/1:159,39:32:198:0.197:2	./.
chr19	35850572	rs75912749	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:128,43:31:171:0.251:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	35850672	rs142125121	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:54,20:33:74:0.270:2	0/1:133,58:33:191:0.304:2	0/1:92,94:33:186:0.505:2	./.	./.	0/1:136,50:33:187:0.269:2	0/1:141,52:34:193:0.269:2	./.	0/1:104,81:33:185:0.438:2
chr19	35850711	rs150331058	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:141,38:31:179:0.212:2	0/1:141,48:31:189:0.254:2	./.	./.	./.	0/1:106,79:30:185:0.427:2	0/1:136,61:30:197:0.310:2	0/1:165,33:29:198:0.167:2	./.	0/1:154,37:32:191:0.194:2	./.
chr19	35850752	rs137994496	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,55:31:178:0.309:2	./.	./.	./.	./.	./.
chr19	35850850	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:31:92:0.043:2	./.	./.
chr19	35850863	rs117058012	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,77:29:79:0.975:2	0/1:1,44:29:45:0.978:2	0/1:2,9:30:11:0.818:2	0/1:98,31:30:129:0.240:2	0/1:2,109:30:111:0.982:2	0/1:0,119:29:119:1.00:2	0/1:3,102:30:105:0.971:2	0/1:1,100:29:101:0.990:2	0/1:0,65:30:65:1.00:2	0/1:1,97:29:98:0.990:2	0/1:1,91:28:92:0.989:2
chr19	35850893	rs201234934	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,70:30:104:0.673:2	0/1:18,45:31:63:0.714:2	./.	./.	./.	0/1:63,51:30:115:0.447:2	./.	0/1:88,47:30:135:0.348:2	./.	0/1:67,35:30:103:0.343:2	./.
chr19	35850914	rs375077198	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:90,49:30:139:0.353:2	0/1:81,32:30:113:0.283:2	./.	./.	./.	./.	./.
chr19	35851090	rs202103561	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:147,40:33:188:0.214:2	0/1:144,46:33:190:0.242:2	0/1:23,27:33:50:0.540:2	./.	./.	./.	./.	./.	0/1:142,52:34:194:0.268:2	0/1:144,55:32:199:0.276:2	./.
chr19	35851200	rs371340728	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,5:31:27:0.185:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	35851239	rs147842512	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,44:31:78:0.564:2	0/1:41,29:31:70:0.414:2	0/1:75,19:31:94:0.202:2	0/1:29,32:31:61:0.525:2	0/1:79,21:32:100:0.210:2	0/1:54,23:33:77:0.299:2	0/1:79,16:32:95:0.168:2	0/1:35,58:32:93:0.624:2
chr19	35851285	rs118036461	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,11:30:61:0.180:2	0/1:41,10:32:51:0.196:2	0/1:0,3:32:3:1.00:2	0/1:1,25:31:26:0.962:2	0/1:0,17:30:17:1.00:2	0/1:18,16:30:34:0.471:2	0/1:0,13:31:13:1.00:2	0/1:23,16:32:39:0.410:2	0/1:0,23:31:23:1.00:2	0/1:25,15:32:40:0.375:2	0/1:0,31:33:31:1.00:2
chr19	35851341	rs143436995	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:33:11:0.273:2	0/1:6,5:30:11:0.455:2	./.	0/1:6,8:33:14:0.571:2	0/1:13,5:32:18:0.278:2	0/1:4,6:33:10:0.600:2	./.	0/1:8,4:32:12:0.333:2
chr19	35862282	rs200980961	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:153,42:31:195:0.215:2	0/1:157,33:33:190:0.174:2	./.	./.	./.	./.	./.
chr19	35862491	rs147426877	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,78:32:182:0.429:2	0/1:75,64:33:139:0.460:2	./.	./.	./.	0/1:165,31:33:196:0.158:2	./.	0/1:154,42:33:196:0.214:2	./.	0/1:163,34:33:197:0.173:2	./.
chr19	35862621	rs202138156	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,75:33:184:0.408:2	0/1:69,55:32:124:0.444:2	./.	./.	./.	0/1:147,43:33:190:0.226:2	./.	0/1:158,38:31:196:0.194:2	./.	0/1:153,42:33:195:0.215:2	./.
chr19	35862659	rs201525581	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:134,63:31:197:0.320:2	./.	./.	./.	./.	./.	./.
chr19	35862726	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,20:31:124:0.161:2	./.	./.
chr19	35862877	rs201062522	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,10:32:60:0.169:2	./.
chr19	35863028	rs201170661	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,18:28:20:0.900:2	0/1:1,11:28:12:0.917:2	./.	./.	./.	0/1:181,6:26:188:0.032:2	./.	0/1:0,16:27:16:1.00:2	./.	0/1:1,10:25:12:0.909:2	./.
chr19	35863141	rs201960715	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:43,7:33:50:0.140:2	0/1:103,71:33:174:0.408:2	0/1:84,83:33:167:0.497:2	./.	./.	0/1:136,31:33:169:0.186:2	0/1:157,31:33:188:0.165:2	./.	0/1:81,79:33:161:0.494:2
chr19	35863180	rs201159994	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:140,50:28:190:0.263:2	0/1:84,37:28:121:0.306:2	./.	./.	./.	0/1:82,103:29:185:0.557:2	0/1:85,108:28:193:0.560:2	0/1:136,62:28:198:0.313:2	./.	0/1:131,38:29:169:0.225:2	./.
chr19	35863221	rs199837860	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,27:32:192:0.141:2	./.	./.	./.	./.	./.
chr19	35863298	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:148,38:32:186:0.204:2	0/1:131,35:32:166:0.211:2	0/1:52,9:32:61:0.148:2	0/1:155,32:32:187:0.171:2	0/1:148,45:32:193:0.233:2	0/1:153,36:33:190:0.190:2	0/1:143,46:31:190:0.243:2	0/1:147,37:32:185:0.201:2	0/1:178,14:33:192:0.073:2	0/1:132,58:32:191:0.305:2	0/1:150,41:31:191:0.215:2
chr19	35940721	rs117215242	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,14:30:37:0.378:2	./.
chr19	35940919	rs61744093	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,37:33:77:0.481:2	./.
chr19	35941248	rs409093	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,47:31:105:0.448:2	./.	0/1:40,53:31:93:0.570:2
chr19	35978299	rs7976	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,15:29:40:0.375:2	0/1:17,17:32:34:0.500:2	./.	./.	./.	0/1:1,61:30:62:0.984:2	./.	0/1:26,43:31:69:0.623:2	0/1:31,36:32:67:0.537:2	0/1:28,17:31:45:0.378:2	./.
chr19	35979696	rs10410228	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:37,29:29:66:0.439:2	0/1:24,22:32:46:0.478:2	0/1:4,3:24:7:0.429:2	./.	./.	0/1:0,99:29:100:1.00:2	./.	0/1:60,34:31:94:0.362:2	0/1:41,45:30:86:0.523:2	0/1:27,48:31:75:0.640:2	./.
chr19	35979745	rs10408664	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,29:30:56:0.518:2	./.	./.	./.	./.	./.	./.	./.
chr19	35991442	rs909072	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:30:36:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,44:32:44:1.00:2	0/1:1,86:32:87:0.989:2	0/1:0,66:32:66:1.00:2	0/1:0,73:33:73:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,58:32:58:1.00:2
chr19	35994376	rs149163465	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,7:15:32:0.219:2	0/1:29,6:21:35:0.171:2	./.	./.
chr19	35994382	rs3829679	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:24,4:33:28:0.143:2	./.	./.	0/1:20,7:33:27:0.259:2	./.	0/1:20,15:32:35:0.429:2	0/1:7,4:29:11:0.364:2	./.	0/1:24,5:32:29:0.172:2	0/1:18,6:33:24:0.250:2	./.
chr19	35994384	rs3829678	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,13:31:26:0.500:2	0/1:6,4:31:10:0.400:2	0/1:0,5:27:5:1.00:2	0/1:16,10:31:26:0.385:2	./.	0/1:15,20:31:35:0.571:2	0/1:6,4:31:10:0.400:2	0/1:24,6:32:30:0.200:2	0/1:18,9:34:27:0.333:2	0/1:12,11:32:23:0.478:2	./.
chr19	35994386	rs79338830	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,21:31:32:0.656:2
chr19	35998362	rs4254439	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,30:30:54:0.556:2	0/1:16,17:27:33:0.515:2	0/1:4,5:29:9:0.556:2	0/1:37,24:30:61:0.393:2	./.	./.	0/1:36,13:27:49:0.265:2	0/1:41,36:30:77:0.468:2	0/1:18,30:30:48:0.625:2	./.	0/1:36,35:29:71:0.493:2
chr19	36001310	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:33:57:0.070:2
chr19	36002370	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,11:27:29:0.393:2	./.
chr19	36002381	rs12981076	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,22:29:22:1.00:2	./.	./.	./.	./.	./.	./.
chr19	36002393	rs11667007	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:31:7:0.571:2	./.	0/1:9,17:28:26:0.654:2	./.	0/1:2,15:30:17:0.882:2	./.	0/1:44,7:33:51:0.137:2	./.	./.
chr19	36002405	rs113540509	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,14:26:25:0.560:2	./.	./.	./.	./.	./.	./.
chr19	36002710	rs4806162	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,87:31:188:0.463:2	0/1:130,66:29:196:0.337:2	./.	./.	./.	./.	./.	./.
chr19	36003962	rs7247001	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,27:32:66:0.409:2	0/1:19,14:33:34:0.424:2	./.	0/1:21,22:32:43:0.512:2
chr19	36004106	rs4806163	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,70:32:72:0.972:2	0/1:0,40:32:40:1.00:2	0/1:0,13:33:13:1.00:2	0/1:87,72:33:159:0.453:2	0/1:0,130:32:130:1.00:2	0/1:0,131:33:131:1.00:2	0/1:0,157:33:157:1.00:2	0/1:1,132:32:133:0.992:2	0/1:0,113:34:113:1.00:2	0/1:0,84:33:84:1.00:2	0/1:1,84:32:85:0.988:2
chr19	36004171	rs12460932	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,51:31:104:0.490:2	0/1:40,47:30:87:0.540:2	./.	./.	./.	./.	./.	./.
chr19	36015652	rs17705633	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,20:31:49:0.408:2	0/1:14,12:32:26:0.462:2	./.	./.	./.	0/1:2,90:32:92:0.978:2	./.	0/1:53,72:32:125:0.576:2	./.	./.	./.
chr19	36015755	rs113939892	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,55:31:137:0.401:2	./.	./.	./.	./.	./.
chr19	36017615	rs116935689	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,60:32:145:0.414:2	./.	./.	./.	./.	./.	./.	./.
chr19	36033460	rs2239945	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,46:30:94:0.489:2	./.	./.	./.	./.	./.	./.	./.
chr19	36038038	rs141810425	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,63:32:123:0.512:2
chr19	36041982	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:32:144:0.028:2
chr19	36048741	rs2230181	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,29:30:29:1.00:2	0/1:0,18:30:18:1.00:2	./.	./.	0/1:11,12:28:23:0.522:2	0/1:25,17:28:42:0.405:2	0/1:6,8:29:14:0.571:2	0/1:13,13:29:26:0.500:2	0/1:2,39:30:41:0.951:2	0/1:10,6:27:16:0.375:2	0/1:6,8:29:14:0.571:2
chr19	36050969	rs2733743	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,9:31:11:0.818:2	0/1:0,12:31:12:1.00:2	./.	0/1:0,12:31:12:1.00:2	0/1:1,25:30:26:0.962:2	0/1:18,13:29:31:0.419:2	0/1:6,3:32:9:0.333:2	0/1:0,11:31:11:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,8:32:8:1.00:2
chr19	36125214	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:32:36:0.111:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	36134208	rs2285419	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,14:30:27:0.519:2	./.	./.	./.	./.	./.	./.	./.
chr19	36134499	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:26:65:0.062:2	./.	./.	./.	./.
chr19	36142187	rs7991	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,11:33:22:0.500:2	0/1:12,6:30:18:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	36157740	rs61741212	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,83:29:191:0.437:2	./.	./.	./.	./.	0/1:79,59:29:139:0.428:2
chr19	36159368	rs2267586	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,54:33:139:0.388:2	./.	./.	./.	./.	./.	./.	0/1:57,40:32:97:0.412:2
chr19	36168872	rs2285420	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,17:30:39:0.436:2	./.	0/1:20,11:30:31:0.355:2	./.	./.	./.	./.	0/1:11,13:31:24:0.542:2
chr19	36168914	rs2285421	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:30:29:1.00:2	0/1:0,24:30:24:1.00:2	0/1:6,3:30:9:0.333:2	0/1:35,27:30:62:0.435:2	0/1:44,53:29:97:0.546:2	0/1:44,26:29:70:0.371:2	0/1:60,48:30:108:0.444:2	0/1:53,43:30:96:0.448:2	0/1:43,37:30:80:0.463:2	0/1:0,47:30:48:1.00:2	0/1:0,49:29:49:1.00:2
chr19	36206050	rs2227278	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,7:32:17:0.412:2	./.	0/1:13,7:25:20:0.350:2	./.	./.	./.	./.	0/1:15,6:32:21:0.286:2
chr19	36206203	rs146855074	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:30:11:0.364:2	0/1:2,4:32:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	36207510	rs1052491	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:30:14:0.500:2	./.	./.	./.	./.	0/1:11,14:32:25:0.560:2	./.	./.
chr19	36211742	rs80216638	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:30:11:0.364:2
chr19	36221525	rs116914530	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,41:29:73:0.562:2
chr19	36222857	rs16970649	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,22:31:36:0.611:2	./.	./.	./.	./.	0/1:18,18:31:36:0.500:2
chr19	36223747	rs73590585	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,11:27:18:0.611:2	./.	0/1:12,6:24:18:0.333:2	./.	./.	./.	./.	0/1:13,6:29:19:0.316:2
chr19	36223771	rs200327646	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,16:32:33:0.485:2	./.
chr19	36224161	rs112013670	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,11:24:14:0.786:2	./.	0/1:12,10:28:22:0.455:2	./.	./.	./.	./.	0/1:6,8:30:15:0.571:2
chr19	36224705	rs231591	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,56:32:56:1.00:2	0/1:1,31:31:32:0.969:2	./.	0/1:46,28:32:74:0.378:2	0/1:50,34:31:84:0.405:2	0/1:35,31:31:66:0.470:2	0/1:50,32:32:82:0.390:2	0/1:52,26:31:78:0.333:2	0/1:46,47:33:93:0.505:2	0/1:0,62:32:62:1.00:2	0/1:2,69:32:71:0.972:2
chr19	36230767	rs34562867	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,11:29:27:0.407:2	./.	./.	./.	./.	0/1:18,29:28:47:0.617:2
chr19	36231288	rs140952221	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	36236120	rs231597	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,11:32:11:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,20:33:20:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,11:33:11:1.00:2
chr19	36236909	rs10402601	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:10,11:28:21:0.524:2	0/1:6,7:28:13:0.538:2	0/1:1,2:31:3:0.667:2	./.	0/1:31,9:29:40:0.225:2	./.	0/1:18,20:29:38:0.526:2	0/1:21,22:29:43:0.512:2	0/1:15,18:29:33:0.545:2	0/1:16,6:29:22:0.273:2	./.
chr19	36243089	rs170758	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:32:81:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,19:33:19:1.00:2	0/1:0,129:32:129:1.00:2	0/1:1,177:32:178:0.994:2	0/1:0,113:32:113:1.00:2	0/1:0,150:32:150:1.00:2	0/1:0,138:32:138:1.00:2	0/1:0,135:33:135:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,92:32:92:1.00:2
chr19	36243813	rs231243	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,26:32:26:1.00:2	0/1:0,16:32:16:1.00:2	./.	0/1:0,26:32:26:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,36:32:36:1.00:2
chr19	36255843	rs116923661	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,22:32:52:0.423:2	./.	./.	./.	./.	./.
chr19	36255965	rs7252936	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,36:32:67:0.537:2
chr19	36258721	rs73592448	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,21:30:46:0.457:2	./.	./.	./.	./.	0/1:22,20:28:42:0.476:2
chr19	36258765	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,4:29:31:0.133:2	./.	./.	./.
chr19	36258842	rs231217	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,5:27:14:0.357:2	./.	./.	./.	./.	0/1:9,4:26:13:0.308:2
chr19	36268771	rs231228	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,34:31:70:0.486:2	./.	0/1:41,17:31:58:0.293:2	./.	./.	./.	0/1:43,39:32:82:0.476:2	0/1:2,63:31:65:0.969:2
chr19	36271139	rs231233	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,52:29:81:0.642:2	./.	./.	./.	./.	./.	0/1:60,29:31:89:0.326:2	0/1:31,30:30:61:0.492:2
chr19	36271871	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.
chr19	36273308	rs35297478	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,45:29:88:0.511:2	./.	./.	./.	./.	0/1:36,22:29:58:0.379:2
chr19	36273534	rs2291067	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:17,23:30:40:0.575:2	0/1:7,12:30:19:0.632:2	./.	./.	0/1:61,42:28:103:0.408:2	./.	0/1:41,40:30:81:0.494:2	0/1:39,36:30:75:0.480:2	0/1:28,28:31:56:0.500:2	0/1:35,23:31:58:0.397:2	./.
chr19	36275074	rs62112163	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:61,55:30:116:0.474:2	0/1:46,35:32:81:0.432:2	0/1:11,6:32:18:0.353:2	./.	0/1:114,85:30:199:0.427:2	./.	0/1:62,56:31:118:0.475:2	0/1:78,83:30:161:0.516:2	0/1:79,81:31:160:0.506:2	0/1:63,35:30:98:0.357:2	./.
chr19	36278470	rs231235	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:8,13:28:21:0.619:2	0/1:6,4:28:10:0.400:2	./.	0/1:4,3:30:7:0.429:2	./.	0/1:0,8:31:9:1.00:2	./.	./.	./.	0/1:6,7:28:13:0.538:2	0/1:0,7:26:7:1.00:2
chr19	36278804	rs200040171	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,5:25:45:0.111:2	./.	./.	./.	./.	0/1:87,8:21:95:0.084:2	./.	./.	./.	0/1:55,6:29:61:0.098:2	./.
chr19	36278842	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,15:15:52:0.288:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	36278848	.	A	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:76,11:14:87:0.126:2	./.	./.	./.	0/1:111,13:16:127:0.105:2	./.	0/1:125,13:14:138:0.094:2	./.	0/1:104,14:14:119:0.119:2	0/1:90,10:23:100:0.100:2	0/1:69,15:14:86:0.179:2
chr19	36278850	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,10:15:88:0.114:2
chr19	36290977	rs3761097	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,6:32:27:0.222:2	./.	./.	./.	0/1:12,7:33:19:0.368:2	./.
chr19	36297438	rs148473605	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,13:32:34:0.382:2	0/1:11,13:33:24:0.542:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	36302921	rs12462360	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	./.	0/1:37,16:27:53:0.302:2	./.	./.	./.	0/1:0,47:29:47:1.00:2	./.
chr19	36303664	rs3848666	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	36322270	rs2071327	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,51:31:51:1.00:2	0/1:2,42:32:44:0.955:2	./.	./.	./.	0/1:43,33:32:76:0.434:2	./.	0/1:54,49:32:103:0.476:2	./.	0/1:0,74:32:74:1.00:2	./.
chr19	36322601	rs4806213	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,9:29:17:0.529:2	./.	./.	./.	./.
chr19	36336437	rs201239200	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:17:15:0.400:2	./.	./.	./.	./.	./.	./.	./.
chr19	36336681	rs371484897	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:31:77:0.052:2	./.	./.	./.
chr19	36336690	rs115444936	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,13:27:57:0.228:2	./.	./.	./.	./.
chr19	36339247	rs33950747	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,67:32:110:0.609:2	./.	./.	0/1:41,52:33:93:0.559:2	./.	./.
chr19	36339295	rs34320609	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,50:29:102:0.490:2	./.	./.	./.	./.	./.	./.	./.
chr19	36342212	rs3814995	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,13:29:29:0.448:2	0/1:14,10:30:24:0.417:2	./.	./.	0/1:50,33:28:83:0.398:2	0/1:31,29:29:60:0.483:2	0/1:35,36:30:71:0.507:2	0/1:29,21:30:50:0.420:2	./.	0/1:25,15:31:40:0.375:2	0/1:33,23:31:56:0.411:2
chr19	36351935	rs35854130	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,4:32:10:0.400:2	0/1:6,7:32:13:0.538:2	./.	0/1:7,8:31:15:0.533:2	0/1:12,10:32:22:0.455:2	./.	./.	0/1:8,9:32:17:0.529:2	./.	0/1:8,4:33:12:0.333:2	./.
chr19	36355595	rs382789	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:32:92:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,125:32:125:1.00:2	0/1:0,100:33:100:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,96:33:96:1.00:2
chr19	36362763	rs371660334	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,18:30:35:0.514:2	./.	./.	./.	./.	./.
chr19	36365646	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,6:29:92:0.065:2	./.	./.	./.	./.	./.	./.	./.
chr19	36367509	rs35586905	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,28:32:52:0.538:2	./.	./.	./.	./.	0/1:27,20:32:47:0.426:2
chr19	36387710	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,14:20:155:0.090:2	./.	0/1:148,10:18:159:0.063:2	./.	./.	0/1:113,10:16:123:0.081:2
chr19	36398454	rs111477177	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,26:33:65:0.400:2	./.	./.	./.	./.	./.	./.
chr19	36431525	rs115188525	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,38:32:92:0.413:2	./.	./.	./.	./.
chr19	36487146	rs7925	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	0/1:6,12:31:18:0.667:2	./.	./.	./.	./.
chr19	36497358	rs2285422	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:32:96:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,134:32:134:1.00:2	0/1:82,63:33:145:0.434:2	0/1:64,39:32:103:0.379:2	0/1:2,117:33:119:0.983:2	0/1:0,140:32:140:1.00:2	./.	0/1:0,83:32:83:1.00:2	./.
chr19	36497490	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,20:32:38:0.526:2	./.	./.	./.	./.	./.	./.
chr19	36499173	rs2285424	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,46:31:112:0.411:2	./.	./.	./.	./.	0/1:56,45:33:101:0.446:2	./.	./.
chr19	36530332	rs10420353	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:31:5:1.00:2	./.	./.	./.	0/1:3,3:33:6:0.500:2	./.
chr19	36530343	rs10421966	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:33:5:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.	0/1:4,3:34:7:0.429:2	./.
chr19	36530428	rs34250145	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,15:29:42:0.357:2	./.	./.	./.	./.	0/1:17,16:32:33:0.485:2	./.	./.
chr19	36549690	rs11538454	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,57:32:57:1.00:2	0/1:2,33:32:35:0.943:2	./.	./.	0/1:54,35:32:89:0.393:2	./.	./.	0/1:36,37:31:73:0.507:2	./.	./.	0/1:32,31:31:63:0.492:2
chr19	36574063	rs45567532	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	./.	./.	0/1:45,31:32:76:0.408:2	./.	./.	./.	./.
chr19	36575645	rs2301734	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,12:31:13:0.923:2	0/1:0,11:33:11:1.00:2	./.	./.	0/1:33,17:31:50:0.340:2	./.	./.	0/1:35,12:34:47:0.255:2	./.	./.	0/1:15,4:33:19:0.211:2
chr19	36583651	rs61494900	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,13:31:26:0.500:2	./.	./.	./.	0/1:107,88:31:195:0.451:2	./.	./.	./.	./.
chr19	36590329	rs2285745	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:29:4:1.00:2	0/1:0,34:26:34:1.00:2	0/1:53,40:28:93:0.430:2	0/1:0,38:28:38:1.00:2	0/1:0,35:27:35:1.00:2	0/1:37,25:26:62:0.403:2	0/1:0,34:29:34:1.00:2	0/1:13,20:27:33:0.606:2	./.
chr19	36594063	rs17851502	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,42:31:82:0.512:2	./.	./.	./.	./.
chr19	36594659	rs2074435	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,16:32:36:0.444:2	./.	0/1:0,49:30:49:1.00:2	0/1:0,35:31:35:1.00:2	0/1:21,21:31:42:0.500:2	0/1:11,21:31:32:0.656:2	0/1:18,19:30:37:0.514:2	./.
chr19	36594700	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,4:32:37:0.108:2	./.	./.	./.	./.	./.	./.
chr19	36595436	rs1008328	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:33:45:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,13:32:13:1.00:2	0/1:39,49:32:88:0.557:2	0/1:58,45:32:103:0.437:2	0/1:0,69:32:69:1.00:2	0/1:1,93:32:94:0.989:2	0/1:0,85:33:85:1.00:2	0/1:29,40:33:69:0.580:2	0/1:34,28:33:62:0.452:2	0/1:30,45:34:75:0.600:2
chr19	36605552	rs2231566	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,24:31:42:0.571:2	0/1:22,18:30:40:0.450:2	./.	./.	./.	0/1:13,29:33:42:0.690:2	./.	./.
chr19	36632057	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,3:33:20:0.150:2	./.	./.	./.	./.	./.	./.
chr19	36632060	rs11084845	T	A,C	.	PASS	AC=1,1;AF=0.167,0.167;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:BQ:DP:FA:SS	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/2:28:27:0.148:2	./.	./.	./.	0/1:32:21:0.429:2	./.	./.
chr19	36632063	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,4:25:29:0.138:2	./.	./.	./.	./.	./.	./.
chr19	36640769	rs14100	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:28:29:1.00:2	0/1:0,19:27:19:1.00:2	0/1:0,4:29:4:1.00:2	0/1:0,47:28:47:1.00:2	0/1:0,24:28:25:1.00:2	0/1:0,37:28:37:1.00:2	0/1:0,44:29:44:1.00:2	0/1:0,51:27:51:1.00:2	0/1:0,49:29:49:1.00:2	0/1:0,26:29:26:1.00:2	0/1:0,55:29:55:1.00:2
chr19	36642874	rs17879731	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,7:30:24:0.292:2	0/1:10,11:30:21:0.524:2	0/1:12,11:32:23:0.478:2	./.	./.
chr19	36642884	rs17879437	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,15:29:19:0.789:2	0/1:3,3:29:6:0.500:2	0/1:0,3:28:3:1.00:2	0/1:5,7:29:12:0.583:2	0/1:18,5:27:23:0.217:2	./.	0/1:21,5:26:26:0.192:2	./.	./.	./.	0/1:14,17:29:31:0.548:2
chr19	36674305	rs4805162	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,38:33:75:0.507:2	0/1:15,25:33:40:0.625:2	0/1:0,11:33:11:1.00:2	0/1:57,49:32:106:0.462:2	0/1:0,86:32:86:1.00:2	0/1:55,45:32:100:0.450:2	0/1:54,58:32:112:0.518:2	0/1:52,39:32:91:0.429:2	0/1:59,51:33:110:0.464:2	./.	0/1:50,56:33:106:0.528:2
chr19	36727365	rs2070132	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:22,22:33:44:0.500:2	0/1:10,11:32:21:0.524:2	./.	0/1:30,27:32:57:0.474:2	./.	0/1:23,22:31:45:0.489:2	0/1:36,11:32:47:0.234:2	0/1:25,31:31:56:0.554:2	0/1:32,21:33:53:0.396:2	0/1:28,21:32:49:0.429:2	0/1:45,36:32:81:0.444:2
chr19	36728290	rs4806293	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:8,19:32:27:0.704:2	0/1:0,7:33:7:1.00:2	./.	./.	0/1:3,9:31:12:0.750:2	./.	./.	./.	0/1:8,8:34:16:0.500:2	./.	./.
chr19	36831573	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:34:83:0.048:2	./.	./.
chr19	36896578	rs150371532	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,36:32:67:0.537:2	0/1:22,18:31:40:0.450:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	36940760	rs2967532	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,27:32:67:0.403:2	0/1:37,23:32:60:0.383:2	0/1:0,6:31:6:1.00:2	0/1:53,20:30:73:0.274:2	0/1:24,27:31:51:0.529:2	0/1:22,32:30:55:0.593:2	0/1:0,40:31:40:1.00:2	0/1:1,53:31:54:0.981:2	0/1:0,98:32:98:1.00:2	0/1:30,32:31:62:0.516:2	0/1:2,110:32:112:0.982:2
chr19	37004938	rs2967505	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,35:31:91:0.385:2	0/1:24,18:30:43:0.429:2	0/1:4,7:30:11:0.636:2	0/1:56,27:30:83:0.325:2	./.	0/1:35,43:30:78:0.551:2	0/1:1,52:30:53:0.981:2	0/1:2,101:30:103:0.981:2	0/1:0,89:31:89:1.00:2	0/1:41,37:28:78:0.474:2	0/1:4,89:29:93:0.957:2
chr19	37005298	rs76808668	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,47:31:89:0.528:2	./.	./.	./.	./.	./.	0/1:35,44:30:79:0.557:2	./.
chr19	37038092	rs2278168	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:24,31:33:55:0.564:2	0/1:11,25:33:36:0.694:2	0/1:3,4:32:7:0.571:2	./.	0/1:23,29:32:52:0.558:2	./.	./.	./.	./.	./.	./.
chr19	37038416	rs10424565	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,50:32:114:0.439:2	./.	./.
chr19	37039069	rs2912444	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:30:95:1.00:2	0/1:0,52:29:52:1.00:2	0/1:0,8:30:8:1.00:2	0/1:1,111:30:112:0.991:2	0/1:24,41:30:65:0.631:2	0/1:37,39:29:76:0.513:2	0/1:0,82:29:82:1.00:2	0/1:0,113:29:113:1.00:2	0/1:2,138:30:140:0.986:2	0/1:0,64:29:64:1.00:2	0/1:72,52:30:124:0.419:2
chr19	37065732	rs2912406	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:23,28:33:51:0.549:2	0/1:12,19:32:31:0.613:2	./.	./.	0/1:20,20:32:40:0.500:2	./.	0/1:52,3:34:55:0.055:2	./.	0/1:50,30:33:80:0.375:2	./.	./.
chr19	37117302	rs3108171	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:30,20:32:50:0.400:2	0/1:17,12:31:29:0.414:2	./.	./.	0/1:0,63:31:63:1.00:2	0/1:26,39:31:65:0.600:2	./.	./.	0/1:50,28:32:78:0.359:2	./.	0/1:31,38:31:69:0.551:2
chr19	37118439	rs61732180	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:35,25:32:60:0.417:2	0/1:12,22:32:34:0.647:2	./.	./.	0/1:10,14:32:24:0.583:2	./.	./.	./.	./.	./.	./.
chr19	37134737	rs10419469	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,10:33:20:0.500:2	./.	./.
chr19	37209866	rs34642314	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,7:31:14:0.500:2	./.
chr19	37210525	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,6:29:115:0.052:2
chr19	37210529	rs3108200	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:54,37:33:91:0.407:2	0/1:33,23:32:56:0.411:2	./.	./.	0/1:51,40:32:91:0.440:2	./.	./.	./.	0/1:66,79:33:145:0.545:2	./.	./.
chr19	37210805	rs3108201	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,13:31:21:0.619:2	0/1:8,8:30:16:0.500:2	./.	./.	0/1:0,16:30:16:1.00:2	0/1:25,19:29:44:0.432:2	./.	./.	0/1:19,18:32:37:0.486:2	./.	0/1:15,28:32:43:0.651:2
chr19	37211384	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:32:41:0.098:2	./.	./.	./.
chr19	37309498	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,24:30:57:0.421:2	0/1:17,15:30:32:0.469:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	37309527	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:32:44:0.091:2	./.	./.	./.
chr19	37310344	rs3745775	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,28:30:58:0.483:2	0/1:12,7:28:19:0.368:2	0/1:0,6:29:6:1.00:2	0/1:17,16:29:33:0.485:2	./.	0/1:22,18:30:40:0.450:2	0/1:0,36:29:36:1.00:2	0/1:1,43:30:44:0.977:2	0/1:32,14:30:46:0.304:2	0/1:11,15:29:26:0.577:2	0/1:25,20:29:45:0.444:2
chr19	37368561	rs190512763	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,19:31:53:0.358:2	./.	./.	./.
chr19	37368887	rs4806370	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,23:30:51:0.451:2	0/1:9,19:31:28:0.679:2	0/1:16,22:30:38:0.579:2	./.	./.	./.
chr19	37369454	rs555023	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:15,19:33:34:0.559:2	0/1:9,6:33:15:0.400:2	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	0/1:13,22:33:35:0.629:2	./.	./.	./.
chr19	37369543	rs7256044	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:11,19:33:30:0.633:2	0/1:8,8:34:16:0.500:2	./.	./.	./.	./.	./.	0/1:13,16:31:29:0.552:2	./.	./.	./.
chr19	37369924	rs12151333	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:32:9:0.667:2	./.	0/1:7,3:29:10:0.300:2	0/1:3,5:28:8:0.625:2	./.	0/1:0,3:33:3:1.00:2	0/1:5,4:31:9:0.444:2	0/1:5,4:31:9:0.444:2
chr19	37382998	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:33:62:0.065:2
chr19	37441111	rs571294	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,23:33:23:1.00:2	0/1:0,13:31:13:1.00:2	./.	0/1:7,7:32:14:0.500:2	./.	0/1:16,8:32:24:0.333:2	0/1:7,10:33:17:0.588:2	0/1:0,12:32:12:1.00:2	0/1:16,13:33:29:0.448:2	0/1:11,13:32:24:0.542:2	0/1:16,8:33:24:0.333:2
chr19	37441365	rs547483	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:16,10:30:26:0.385:2	0/1:5,3:33:8:0.375:2	./.	0/1:10,11:30:21:0.524:2	./.	0/1:6,10:28:16:0.625:2	0/1:14,14:31:28:0.500:2	0/1:7,16:29:23:0.696:2	./.	0/1:18,10:29:28:0.357:2	0/1:13,6:27:19:0.316:2
chr19	37441462	rs546589	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:30:24:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,2:32:2:1.00:2	0/1:17,12:30:29:0.414:2	./.	0/1:17,10:31:27:0.370:2	0/1:10,16:30:26:0.615:2	0/1:0,20:30:20:1.00:2	0/1:22,7:31:29:0.241:2	0/1:14,13:30:27:0.481:2	0/1:21,9:32:30:0.300:2
chr19	37441546	rs140144622	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,17:33:41:0.415:2	./.	./.	./.	./.	./.	0/1:14,16:33:30:0.533:2	./.
chr19	37441980	rs1644634	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,21:32:23:0.913:2	0/1:0,10:31:10:1.00:2	0/1:2,3:31:5:0.600:2	0/1:19,9:32:28:0.321:2	./.	0/1:8,3:32:11:0.273:2	0/1:11,9:33:20:0.450:2	0/1:0,28:31:28:1.00:2	0/1:14,11:31:25:0.440:2	0/1:4,8:32:12:0.667:2	0/1:23,12:32:35:0.343:2
chr19	37642787	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,19:32:143:0.133:2
chr19	37642862	rs200464481	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:130,19:11:149:0.128:2	./.	./.	0/1:111,17:13:128:0.133:2	0/1:85,10:15:95:0.105:2	0/1:120,14:14:134:0.104:2	./.	0/1:119,17:12:136:0.125:2	./.	./.	0/1:133,13:16:147:0.089:2
chr19	37642917	rs77675231	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,157:31:181:0.867:2	0/1:9,64:31:73:0.877:2	0/1:23,8:29:31:0.258:2	0/1:121,69:30:190:0.363:2	0/1:132,64:30:196:0.327:2	0/1:123,73:30:196:0.372:2	0/1:97,77:30:174:0.443:2	0/1:27,165:30:192:0.859:2	0/1:105,88:32:193:0.456:2	0/1:102,58:31:160:0.363:2	0/1:121,60:31:181:0.331:2
chr19	37642922	rs79071992	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,160:32:186:0.860:2	0/1:14,63:31:77:0.818:2	0/1:24,8:30:32:0.250:2	0/1:123,68:31:191:0.356:2	0/1:130,65:31:195:0.333:2	0/1:122,73:31:195:0.374:2	0/1:97,79:32:176:0.449:2	0/1:27,160:31:187:0.856:2	0/1:103,86:33:189:0.455:2	0/1:100,57:32:157:0.363:2	0/1:121,62:31:183:0.339:2
chr19	37643777	rs16972020	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,5:27:161:0.031:2	./.	./.	./.	./.
chr19	37644051	rs57916401	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:102,67:29:169:0.396:2	0/1:70,54:29:124:0.435:2	./.	0/1:113,65:29:178:0.365:2	0/1:109,75:29:184:0.408:2	0/1:99,64:29:163:0.393:2	0/1:101,74:29:175:0.423:2	0/1:111,62:30:173:0.358:2	./.	0/1:75,68:29:143:0.476:2	0/1:110,75:29:185:0.405:2
chr19	37676425	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,55:32:144:0.382:2
chr19	37676500	rs201482378	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:109,10:15:119:0.084:2	./.	./.	0/1:125,21:14:146:0.144:2	./.	0/1:135,19:13:155:0.123:2	0/1:121,17:14:138:0.123:2	0/1:137,16:14:153:0.105:2	0/1:123,18:13:142:0.128:2	0/1:120,15:14:135:0.111:2	0/1:133,18:17:152:0.119:2
chr19	37676528	rs75662394	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:93,68:33:161:0.422:2	0/1:67,53:32:120:0.442:2	./.	0/1:107,84:33:191:0.440:2	0/1:87,106:32:193:0.549:2	0/1:106,77:32:183:0.421:2	0/1:103,94:32:197:0.477:2	0/1:104,84:32:188:0.447:2	./.	0/1:93,87:33:180:0.483:2	0/1:99,93:33:192:0.484:2
chr19	37676555	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:163,12:31:175:0.069:2	0/1:106,6:30:112:0.054:2	./.	0/1:184,7:29:191:0.037:2	./.	0/1:188,7:30:195:0.036:2	./.	0/1:164,20:31:185:0.109:2	./.	0/1:181,6:30:187:0.032:2	0/1:166,13:30:179:0.073:2
chr19	37676560	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:166,14:32:181:0.078:2	0/1:103,7:32:110:0.064:2	./.	0/1:173,10:31:183:0.055:2	./.	0/1:180,12:30:192:0.063:2	./.	0/1:156,29:31:185:0.157:2	0/1:183,7:32:190:0.037:2	0/1:180,9:32:189:0.048:2	0/1:163,15:32:178:0.084:2
chr19	37677177	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,5:33:82:0.061:2	./.	./.	./.	./.	./.	./.
chr19	37677662	rs140302185	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:189,7:35:196:0.036:2	0/1:117,6:31:123:0.049:2	./.	0/1:178,20:34:198:0.101:2	0/1:171,26:32:197:0.132:2	0/1:180,18:32:198:0.091:2	0/1:169,29:33:198:0.146:2	0/1:190,10:32:200:0.050:2	./.	0/1:180,16:33:196:0.082:2	0/1:190,9:34:199:0.045:2
chr19	37677748	rs45626541	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:77,52:32:129:0.403:2	0/1:36,32:32:68:0.471:2	./.	0/1:79,57:31:136:0.419:2	0/1:67,41:31:108:0.380:2	0/1:77,68:31:145:0.469:2	0/1:59,36:32:95:0.379:2	0/1:84,58:31:142:0.408:2	./.	0/1:53,46:31:99:0.465:2	0/1:94,67:31:161:0.416:2
chr19	37680948	rs147348232	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,37:32:78:0.474:2	./.
chr19	37733732	rs116890167	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,8:26:20:0.400:2	0/1:21,21:30:42:0.500:2	./.	./.	./.
chr19	37733771	rs12974332	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,11:33:34:0.324:2	./.	./.	./.	./.	0/1:20,17:33:37:0.459:2	./.	0/1:36,36:32:72:0.500:2
chr19	37854235	rs3745765	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:20,27:31:47:0.574:2	0/1:10,14:31:24:0.583:2	./.	./.	./.	./.	./.	0/1:52,42:31:94:0.447:2	0/1:51,21:32:72:0.292:2	./.	./.
chr19	37854440	rs146330869	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,50:30:94:0.532:2	./.	./.	./.	./.	./.	0/1:49,49:30:98:0.500:2	./.
chr19	37854580	rs3745764	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,6:30:9:0.667:2	0/1:36,27:30:63:0.429:2	./.	0/1:29,26:30:55:0.473:2	0/1:26,22:30:48:0.458:2	./.	0/1:36,40:30:77:0.526:2	0/1:34,13:31:47:0.277:2	0/1:34,23:32:57:0.404:2
chr19	37879589	rs4452075	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:26,16:30:42:0.381:2	0/1:19,14:29:33:0.424:2	./.	./.	./.	./.	./.	0/1:37,20:30:57:0.351:2	0/1:22,19:32:41:0.463:2	./.	./.
chr19	37879775	rs200881565	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,36:32:77:0.468:2	./.
chr19	37975208	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,4:35:40:0.103:2
chr19	38024271	rs12977460	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,6:34:11:0.545:2	0/1:41,39:33:80:0.488:2	./.	./.	0/1:48,64:33:112:0.571:2	./.	0/1:62,45:33:107:0.421:2	./.	0/1:54,33:32:87:0.379:2
chr19	38055612	rs4802029	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:26,24:31:50:0.480:2	0/1:17,22:32:39:0.564:2	0/1:3,3:31:6:0.500:2	./.	./.	./.	./.	0/1:33,39:31:72:0.542:2	0/1:34,32:32:66:0.485:2	./.	./.
chr19	38056574	rs28512414	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:19,15:31:34:0.441:2	0/1:8,13:32:21:0.619:2	0/1:0,5:31:5:1.00:2	./.	./.	./.	./.	0/1:20,22:31:42:0.524:2	0/1:16,19:32:35:0.543:2	./.	./.
chr19	38056763	rs8111790	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,19:32:48:0.396:2	0/1:18,24:32:42:0.571:2	./.	0/1:39,16:32:55:0.291:2	0/1:21,19:32:40:0.475:2	0/1:30,23:31:53:0.434:2	0/1:32,14:33:46:0.304:2	0/1:29,18:32:47:0.383:2	./.	0/1:28,12:33:40:0.300:2	0/1:36,32:32:68:0.471:2
chr19	38056780	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,4:32:40:0.100:2	./.	./.	./.	./.	./.	./.
chr19	38077532	rs183118267	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,41:31:91:0.451:2	./.
chr19	38091932	rs1975937	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:4,9:32:13:0.692:2	0/1:2,6:33:8:0.750:2	./.	./.	./.	./.	./.	0/1:14,11:31:25:0.440:2	0/1:24,23:31:47:0.489:2	./.	./.
chr19	38103918	rs57466552	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,4:32:26:0.154:2	./.	./.	./.	./.	./.	./.
chr19	38125920	rs373859418	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:32:47:0.085:2	./.
chr19	38160760	rs79684824	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,15:30:29:0.517:2	./.	./.	./.	./.	./.
chr19	38160954	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,4:32:96:0.042:2	./.	./.	./.	./.	./.	./.	./.
chr19	38161070	rs73037036	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,22:32:70:0.314:2	0/1:45,40:32:85:0.471:2	./.	./.	./.	0/1:47,44:32:91:0.484:2	./.
chr19	38189440	rs958305	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,14:32:42:0.333:2	0/1:10,16:31:26:0.615:2	./.	0/1:0,38:31:38:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,30:33:30:1.00:2	0/1:22,21:32:43:0.488:2	0/1:23,16:34:39:0.410:2	0/1:2,34:32:36:0.944:2	0/1:0,43:31:43:1.00:2
chr19	38189616	rs2075284	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,28:30:72:0.389:2	0/1:12,11:28:23:0.478:2	./.	0/1:0,61:30:61:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,64:30:64:1.00:2	0/1:1,59:30:60:0.983:2	0/1:36,40:31:76:0.526:2	0/1:0,73:30:73:1.00:2	0/1:0,103:30:103:1.00:2
chr19	38189694	rs117357379	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,26:30:66:0.394:2	./.	./.	./.	./.	./.	./.	./.
chr19	38202515	rs12461753	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,30:31:60:0.500:2	0/1:42,42:30:84:0.500:2	./.	./.	./.	0/1:28,37:31:65:0.569:2	./.
chr19	38202516	rs2909097	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:32:49:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,58:32:58:1.00:2	0/1:1,81:32:82:0.988:2	0/1:0,75:33:75:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,69:33:69:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,89:32:89:1.00:2
chr19	38229824	rs3095726	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,13:30:25:0.520:2	0/1:12,6:32:18:0.333:2	0/1:0,3:32:3:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,7:32:7:1.00:2	0/1:18,11:33:29:0.379:2	0/1:12,12:32:24:0.500:2	0/1:0,19:32:19:1.00:2	0/1:0,34:31:34:1.00:2
chr19	38230720	rs3752365	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:32:6:0.500:2	0/1:36,40:30:76:0.526:2	./.	./.	0/1:29,22:30:51:0.431:2	./.	0/1:30,39:31:69:0.565:2	./.	0/1:34,29:28:63:0.460:2
chr19	38375666	rs73027451	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,47:32:99:0.475:2	0/1:52,41:32:93:0.441:2	./.	./.	./.	0/1:29,50:33:79:0.633:2	./.
chr19	38376103	rs73027454	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:16,11:32:27:0.407:2	0/1:4,6:33:10:0.600:2	./.	0/1:9,13:33:22:0.591:2	./.	0/1:10,7:32:17:0.412:2	0/1:14,10:31:24:0.417:2	0/1:8,9:31:17:0.529:2	./.	0/1:7,9:33:16:0.563:2	0/1:17,13:33:30:0.433:2
chr19	38376485	rs10408510	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,132:32:135:0.978:2	0/1:0,53:33:53:1.00:2	0/1:14,5:31:19:0.263:2	0/1:90,69:32:159:0.434:2	0/1:95,61:31:156:0.391:2	0/1:3,127:31:130:0.977:2	0/1:95,81:32:176:0.460:2	0/1:0,163:32:163:1.00:2	0/1:73,80:33:153:0.523:2	0/1:0,126:32:126:1.00:2	0/1:88,57:32:145:0.393:2
chr19	38377404	rs201328117	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,6:30:31:0.194:2	./.	./.	./.	./.	./.
chr19	38377409	rs7252765	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:29:38:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,3:29:3:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,36:27:36:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,56:29:57:1.00:2	0/1:0,35:29:35:1.00:2	0/1:0,31:28:31:1.00:2
chr19	38377414	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,5:32:24:0.208:2	./.	./.	./.	./.	./.
chr19	38377417	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,5:31:23:0.217:2	./.	./.	./.	./.	./.
chr19	38377564	rs7253969	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,156:33:156:1.00:2	0/1:0,87:32:87:1.00:2	0/1:10,20:32:30:0.667:2	0/1:103,87:33:190:0.458:2	0/1:70,66:32:136:0.485:2	0/1:4,166:32:170:0.976:2	0/1:56,63:32:119:0.529:2	0/1:0,181:32:181:1.00:2	0/1:98,93:33:191:0.487:2	0/1:0,135:33:135:1.00:2	0/1:106,83:33:189:0.439:2
chr19	38377773	rs34785154	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:40,33:33:73:0.452:2	0/1:19,24:32:43:0.558:2	./.	./.	./.	./.	./.	0/1:28,23:32:52:0.451:2	0/1:28,35:33:63:0.556:2	./.	./.
chr19	38378107	rs60704260	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:88,75:31:164:0.460:2	0/1:47,34:32:81:0.420:2	0/1:12,9:31:21:0.429:2	./.	./.	./.	./.	0/1:106,58:31:164:0.354:2	0/1:89,74:32:163:0.454:2	./.	./.
chr19	38378539	rs10422056	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,94:33:94:1.00:2	0/1:0,46:32:46:1.00:2	0/1:5,7:33:12:0.583:2	0/1:51,47:33:98:0.480:2	0/1:58,41:32:99:0.414:2	0/1:0,85:32:87:1.00:2	0/1:43,43:32:86:0.500:2	0/1:0,100:33:100:1.00:2	0/1:59,79:33:139:0.572:2	0/1:0,93:32:93:1.00:2	0/1:52,66:33:118:0.559:2
chr19	38379446	rs6508750	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:85,101:32:186:0.543:2	0/1:81,91:32:173:0.529:2	0/1:23,25:31:48:0.521:2	0/1:180,5:32:185:0.027:2	0/1:101,84:32:185:0.454:2	0/1:109,78:31:187:0.417:2	./.	0/1:84,111:31:195:0.569:2	0/1:98,91:33:189:0.481:2	0/1:102,90:32:192:0.469:2	./.
chr19	38382328	rs953370	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:12,22:33:35:0.647:2	0/1:7,15:32:22:0.682:2	0/1:3,3:33:6:0.500:2	./.	0/1:23,8:32:31:0.258:2	0/1:27,20:31:47:0.426:2	./.	0/1:22,19:32:41:0.463:2	0/1:21,26:33:47:0.553:2	0/1:15,21:33:36:0.583:2	./.
chr19	38384421	rs3894129	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,18:32:18:1.00:2	0/1:0,13:32:13:1.00:2	./.	0/1:14,10:32:24:0.417:2	0/1:13,16:32:29:0.552:2	0/1:2,20:32:22:0.909:2	0/1:13,16:32:29:0.552:2	0/1:0,18:32:18:1.00:2	0/1:12,12:32:24:0.500:2	0/1:0,19:32:19:1.00:2	0/1:13,24:32:37:0.649:2
chr19	38384722	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,4:31:133:0.030:2	./.	./.	./.	./.	./.	./.	./.
chr19	38384903	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,4:33:67:0.060:2	./.	./.	./.	./.	./.	./.	./.
chr19	38385056	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,4:32:23:0.174:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	38573139	rs62121430	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:23:3:1.00:2	./.	./.	./.	./.
chr19	38621161	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,14:31:30:0.467:2
chr19	38652962	rs61729129	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:85,66:32:151:0.437:2	./.	./.	./.	./.	./.	./.
chr19	38652993	rs332864	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:56,37:31:93:0.398:2	0/1:33,31:32:64:0.484:2	./.	0/1:67,71:31:138:0.514:2	./.	0/1:1,129:31:130:0.992:2	0/1:4,160:31:164:0.976:2	0/1:71,80:31:151:0.530:2	0/1:82,60:32:142:0.423:2	0/1:1,97:32:98:0.990:2	0/1:67,70:31:137:0.511:2
chr19	38673298	rs3745945	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,20:32:60:0.333:2	./.	./.	./.	0/1:27,17:32:44:0.386:2	0/1:19,16:32:35:0.457:2
chr19	38702777	rs2288906	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,111:29:113:0.991:2	./.	./.	./.	./.	./.	./.
chr19	38702950	rs11547760	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,13:31:28:0.464:2	./.	0/1:20,13:32:33:0.394:2	./.	./.	./.	0/1:11,13:32:24:0.542:2	0/1:16,12:31:28:0.429:2
chr19	38706989	rs2278431	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,9:30:18:0.500:2	0/1:96,73:32:169:0.432:2	0/1:1,108:31:109:0.991:2	0/1:1,127:31:128:0.992:2	0/1:0,99:31:99:1.00:2	0/1:117,65:31:182:0.357:2	0/1:81,45:32:126:0.357:2	0/1:0,106:31:106:1.00:2	0/1:70,45:32:115:0.391:2
chr19	38782485	rs11548457	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:47,38:33:85:0.447:2	0/1:33,39:32:72:0.542:2	./.	./.	./.	./.	./.	0/1:91,83:32:174:0.477:2	./.	./.	./.
chr19	38794895	rs2304176	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:23,20:32:43:0.465:2	0/1:12,8:30:20:0.400:2	0/1:1,4:32:5:0.800:2	./.	./.	0/1:21,32:32:53:0.604:2	0/1:33,31:31:64:0.484:2	./.	0/1:33,24:32:57:0.421:2	./.	./.
chr19	38795250	rs45437199	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:30:11:0.300:2	./.	./.	0/1:51,56:31:107:0.523:2	0/1:54,33:30:87:0.379:2	./.	0/1:65,43:31:108:0.398:2	./.	./.
chr19	38795255	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:31:132:0.030:2	./.	./.	./.
chr19	38798086	rs3178327	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:27,26:31:53:0.491:2	0/1:10,18:32:28:0.643:2	0/1:7,9:32:16:0.563:2	./.	./.	0/1:32,33:31:65:0.508:2	0/1:60,54:32:114:0.474:2	0/1:43,47:32:90:0.522:2	0/1:32,49:32:81:0.605:2	./.	./.
chr19	38800165	rs3900981	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:30:8:1.00:2	./.	./.	0/1:59,39:29:98:0.398:2	./.	0/1:51,38:29:89:0.427:2	0/1:26,41:31:67:0.612:2	./.	./.
chr19	38800176	rs11556992	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,19:31:46:0.413:2	0/1:17,13:31:30:0.433:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	38806331	rs11672826	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,8:32:12:0.667:2	0/1:2,4:33:6:0.667:2	0/1:16,5:32:21:0.238:2	0/1:3,9:33:12:0.750:2	0/1:7,3:30:10:0.300:2	0/1:10,14:32:24:0.583:2
chr19	38817363	rs61734615	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,7:32:8:0.875:2	./.	./.	./.	./.
chr19	38817486	rs3745951	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,5:30:6:0.833:2	./.	./.	0/1:30,30:30:60:0.500:2	0/1:57,49:29:106:0.462:2	./.	0/1:39,26:31:65:0.400:2	./.	./.
chr19	38817628	rs35496032	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.	./.	./.	./.
chr19	38817876	rs34989303	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:32:5:0.800:2	./.	./.	0/1:53,37:31:90:0.411:2	./.	./.	0/1:50,28:32:78:0.359:2	./.	./.
chr19	38827960	rs2302182	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	0/1:43,25:31:68:0.368:2	./.	./.	0/1:34,20:32:54:0.370:2	./.	./.
chr19	38847431	rs2286475	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:54,64:32:119:0.542:2	0/1:35,28:31:63:0.444:2	0/1:9,7:33:16:0.438:2	./.	./.	0/1:77,68:32:145:0.469:2	0/1:94,76:32:171:0.447:2	./.	0/1:91,73:33:164:0.445:2	./.	./.
chr19	38848901	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:31:96:0.042:2	./.	./.	./.	./.	./.
chr19	38851455	rs201181657	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,5:19:26:0.192:2	./.	./.	0/1:36,10:12:46:0.217:2	0/1:65,22:11:87:0.253:2	0/1:50,20:11:70:0.286:2	0/1:58,24:9:83:0.293:2	0/1:44,22:12:66:0.333:2	./.	./.	./.
chr19	38852384	rs145616447	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,12:32:19:0.632:2	./.	./.	./.	./.
chr19	38852453	rs3745954	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,10:32:20:0.500:2	0/1:8,13:32:21:0.619:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	38852912	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:31:43:0.093:2	./.	./.
chr19	38861333	rs1052375	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:61,61:31:122:0.500:2	0/1:43,38:31:81:0.469:2	./.	0/1:0,144:31:144:1.00:2	./.	0/1:53,77:30:130:0.592:2	0/1:83,88:31:171:0.515:2	0/1:69,62:31:131:0.473:2	0/1:63,77:31:140:0.550:2	0/1:4,143:31:147:0.973:2	0/1:0,141:31:141:1.00:2
chr19	38871622	rs11541756	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,33:31:67:0.493:2	./.	./.	./.	./.
chr19	38872778	rs1131182	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,6:30:26:0.231:2	./.	./.
chr19	38876352	rs56854837	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:30:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	38877400	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,4:32:43:0.093:2	./.	./.	./.	./.	./.	./.	./.
chr19	38893856	rs3745957	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,13:28:32:0.406:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	38901633	rs34377632	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,33:31:61:0.541:2	./.	0/1:33,27:32:60:0.450:2	./.	./.	./.
chr19	38903606	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,3:32:35:0.086:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	38904052	rs75203827	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,37:32:59:0.627:2	./.	./.	./.	./.	./.	0/1:20,24:33:44:0.545:2	./.
chr19	38904094	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,3:32:26:0.115:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	38905683	rs10412098	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:32:12:0.455:2	./.	./.	0/1:48,32:31:81:0.400:2	./.	0/1:26,16:32:42:0.381:2	./.	./.	./.
chr19	38912764	rs892055	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:18,17:31:35:0.486:2	0/1:14,12:31:26:0.462:2	0/1:0,9:31:9:1.00:2	./.	0/1:26,32:30:59:0.552:2	0/1:0,47:30:47:1.00:2	./.	0/1:38,23:30:61:0.377:2	./.	./.	./.
chr19	38916736	rs35136248	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,43:33:94:0.457:2	./.	0/1:45,53:32:98:0.541:2	./.	./.	./.
chr19	38935280	rs2229139	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,33:32:86:0.384:2	0/1:11,21:33:32:0.656:2	0/1:4,9:30:13:0.692:2	0/1:0,100:32:100:1.00:2	0/1:68,55:32:123:0.447:2	0/1:52,31:31:83:0.373:2	0/1:1,122:32:123:0.992:2	0/1:2,129:32:131:0.985:2	0/1:54,48:33:102:0.471:2	0/1:0,60:32:60:1.00:2	0/1:0,99:32:99:1.00:2
chr19	38939408	rs10406027	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:28:47:1.00:2	0/1:0,31:28:31:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,72:29:72:1.00:2	0/1:0,96:29:96:1.00:2	0/1:37,39:28:76:0.513:2	0/1:0,114:29:114:1.00:2	0/1:0,134:29:134:1.00:2	0/1:54,53:30:107:0.495:2	0/1:0,53:28:53:1.00:2	0/1:0,76:28:76:1.00:2
chr19	38946182	rs2288888	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,12:29:27:0.444:2	0/1:15,24:31:39:0.615:2	./.	0/1:1,37:29:38:0.974:2	0/1:2,46:28:48:0.958:2	0/1:26,23:30:49:0.469:2	0/1:0,56:30:58:1.00:2	0/1:2,41:28:43:0.953:2	0/1:29,21:30:50:0.420:2	0/1:17,15:31:32:0.469:2	0/1:0,47:30:47:1.00:2
chr19	38949904	rs3745847	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,55:32:114:0.482:2	0/1:36,38:32:74:0.514:2	0/1:11,9:32:20:0.450:2	0/1:1,180:32:182:0.994:2	0/1:0,182:32:182:1.00:2	0/1:65,92:31:157:0.586:2	0/1:4,175:32:179:0.978:2	0/1:1,183:32:184:0.995:2	0/1:93,90:33:184:0.492:2	0/1:74,66:32:141:0.471:2	0/1:0,131:32:131:1.00:2
chr19	38956803	rs2228069	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,11:31:22:0.500:2	0/1:4,12:31:16:0.750:2	./.	0/1:0,51:30:51:1.00:2	0/1:1,45:30:46:0.978:2	0/1:21,21:31:42:0.500:2	0/1:0,43:31:43:1.00:2	0/1:15,14:32:29:0.483:2	0/1:0,35:31:35:1.00:2	0/1:10,20:31:30:0.667:2	0/1:0,11:32:11:1.00:2
chr19	38956839	rs2228070	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:12,9:29:21:0.429:2	0/1:15,4:31:19:0.211:2	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	0/1:15,19:31:34:0.559:2	./.	./.	./.
chr19	38958257	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:32:140:0.029:2	./.	./.	./.	./.
chr19	38959680	rs11083462	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:53,30:31:83:0.361:2	0/1:29,15:32:44:0.341:2	0/1:1,4:32:5:0.800:2	./.	./.	0/1:75,59:31:134:0.440:2	./.	0/1:62,55:32:117:0.470:2	./.	0/1:45,27:31:72:0.375:2	./.
chr19	38965975	rs137933390	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,33:32:68:0.485:2	./.	./.	./.	./.	./.
chr19	38976266	rs141107290	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	38979891	rs35021937	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,31:32:90:0.344:2	./.	./.	./.
chr19	38981284	rs2228068	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,29:32:56:0.518:2	0/1:40,34:32:74:0.459:2	./.	./.	./.	0/1:32,35:33:67:0.522:2	./.
chr19	38983180	rs35364374	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,15:30:26:0.577:2	0/1:27,21:30:48:0.438:2	./.	./.	./.	0/1:20,20:31:40:0.500:2	./.
chr19	38989820	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,7:31:122:0.057:2	./.
chr19	38990336	rs2228071	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:29:11:0.545:2	./.	./.	./.	0/1:11,14:30:25:0.560:2	./.	./.	./.	./.
chr19	38990345	rs2229147	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:31:11:0.636:2	./.	./.	./.	0/1:13,14:31:27:0.519:2	./.	./.	./.	./.
chr19	38990593	rs12973632	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,3:31:13:0.231:2	./.	./.	./.	./.	./.	./.	./.	0/1:45,38:31:83:0.458:2
chr19	38991516	rs2228072	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:130,68:31:198:0.343:2	./.	./.	./.	./.	./.	./.
chr19	38991543	rs2071088	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,56:29:165:0.339:2	./.	./.	./.	./.	./.	./.
chr19	38993547	rs2229142	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:32:13:0.462:2	./.	0/1:48,30:31:78:0.385:2	./.	0/1:37,28:30:65:0.431:2	./.	./.	./.	./.
chr19	38993556	rs1469698	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:29:13:0.538:2	./.	0/1:33,48:30:81:0.593:2	./.	./.	0/1:1,68:31:69:0.986:2	./.	0/1:17,23:31:40:0.575:2	0/1:16,11:32:28:0.407:2
chr19	38994910	rs2229144	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,16:32:16:1.00:2	./.	0/1:2,122:32:124:0.984:2	./.	0/1:66,94:32:160:0.588:2	0/1:3,129:32:132:0.977:2	./.	0/1:34,54:33:88:0.614:2	0/1:62,59:32:121:0.488:2
chr19	38995438	rs2960340	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:28:6:1.00:2	./.	0/1:0,33:30:33:1.00:2	./.	0/1:32,25:31:57:0.439:2	0/1:0,41:29:41:1.00:2	./.	0/1:15,16:32:31:0.516:2	0/1:23,23:30:46:0.500:2
chr19	38995510	rs2915951	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:29:8:1.00:2	./.	0/1:0,66:29:66:1.00:2	./.	0/1:44,35:29:79:0.443:2	0/1:0,72:29:72:1.00:2	./.	0/1:25,36:29:61:0.590:2	0/1:52,24:29:76:0.316:2
chr19	38995975	rs2915952	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:32:8:1.00:2	./.	0/1:0,88:31:88:1.00:2	./.	0/1:63,50:32:113:0.442:2	0/1:0,94:31:94:1.00:2	./.	0/1:63,55:32:118:0.466:2	0/1:54,50:31:104:0.481:2
chr19	38996990	rs2229146	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	0/1:1,76:29:77:0.987:2	./.	0/1:48,32:29:80:0.400:2	0/1:0,81:29:81:1.00:2	./.	0/1:42,30:29:72:0.417:2	0/1:33,36:29:69:0.522:2
chr19	38997113	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,4:33:70:0.057:2	./.	./.	./.	./.	./.	./.	./.
chr19	39002691	rs2960338	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:30:12:0.417:2	./.	0/1:70,33:32:103:0.320:2	./.	./.	0/1:4,78:32:82:0.951:2	./.	0/1:61,25:33:86:0.291:2	0/1:50,40:33:90:0.444:2
chr19	39002725	rs2071089	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,13:30:13:1.00:2	./.	0/1:2,109:29:111:0.982:2	./.	0/1:107,76:30:183:0.415:2	0/1:3,108:29:111:0.973:2	./.	0/1:57,29:30:86:0.337:2	0/1:67,49:29:116:0.422:2
chr19	39008003	rs2304151	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,22:30:38:0.579:2	0/1:13,20:29:33:0.606:2	./.	./.	./.	./.	0/1:14,9:31:23:0.391:2	./.
chr19	39010023	rs2229145	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:31:12:0.417:2	./.	./.	./.	0/1:21,20:29:41:0.488:2	./.	./.	./.	./.
chr19	39010053	rs41274330	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,30:31:71:0.423:2	./.	./.	./.	./.	./.	./.
chr19	39019683	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,17:32:61:0.279:2	./.	./.
chr19	39023340	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,16:31:63:0.254:2	./.	./.	./.	./.	./.	./.	./.
chr19	39026667	rs142518033	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,68:31:152:0.447:2	0/1:62,49:31:111:0.441:2	./.	./.	./.	./.	./.	./.
chr19	39061258	rs35959206	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:30:13:0.538:2	./.	./.	./.	0/1:43,57:29:100:0.570:2	./.	./.	./.	./.
chr19	39062775	rs140750876	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,53:31:111:0.477:2	./.	./.	./.	./.	./.	./.
chr19	39088040	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:33:77:0.052:2	./.	./.
chr19	39101870	rs2287732	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,7:31:15:0.467:2	0/1:77,71:31:148:0.480:2	0/1:3,79:29:82:0.963:2	./.	./.	./.	./.	0/1:68,64:32:132:0.485:2	0/1:56,59:31:115:0.513:2
chr19	39109975	rs2232997	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:27:8:0.375:2	0/1:60,49:31:109:0.450:2	0/1:2,115:30:117:0.983:2	./.	./.	./.	./.	0/1:50,41:29:91:0.451:2	0/1:41,52:31:93:0.559:2
chr19	39196736	rs11553600	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,37:32:66:0.561:2	0/1:15,19:32:34:0.559:2	./.	0/1:45,41:32:86:0.477:2	0/1:85,53:31:138:0.384:2	./.	0/1:41,39:32:80:0.488:2	./.	./.	./.	./.
chr19	39196745	rs3745859	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:40,32:32:72:0.444:2	0/1:19,16:32:35:0.457:2	./.	0/1:52,46:31:99:0.469:2	./.	0/1:38,43:31:81:0.531:2	0/1:43,44:32:87:0.506:2	0/1:60,42:32:102:0.412:2	0/1:45,30:33:75:0.400:2	0/1:61,41:31:102:0.402:2	./.
chr19	39215172	rs12986337	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:26:9:0.556:2	./.	0/1:49,44:30:93:0.473:2	./.	./.	./.	./.	./.	0/1:27,24:29:51:0.471:2
chr19	39219780	rs1136956	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,29:32:71:0.408:2	0/1:21,18:32:39:0.462:2	0/1:6,3:33:9:0.333:2	0/1:48,42:32:91:0.467:2	0/1:1,133:32:134:0.993:2	./.	0/1:74,64:32:138:0.464:2	./.	./.	./.	0/1:34,31:32:65:0.477:2
chr19	39221828	rs200530826	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,13:13:100:0.131:2	./.	./.	./.	./.	./.	./.
chr19	39224413	rs4801861	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,95:32:99:0.960:2	0/1:0,71:32:71:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,151:33:151:1.00:2	0/1:0,111:32:111:1.00:2	0/1:74,79:32:153:0.516:2	0/1:0,133:32:133:1.00:2	0/1:72,72:33:144:0.500:2	0/1:81,90:33:171:0.526:2	0/1:57,77:33:134:0.575:2	0/1:80,77:32:157:0.490:2
chr19	39224775	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,12:11:57:0.211:2
chr19	39224780	.	A	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:43,7:21:50:0.140:2	./.	./.	0/1:54,13:18:68:0.194:2	./.	./.	0/1:55,15:13:70:0.214:2	./.	./.	0/1:56,10:19:66:0.152:2	./.
chr19	39226773	rs373743240	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,6:30:26:0.231:2	./.	./.	./.	./.	./.
chr19	39227168	rs201526780	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,30:31:170:0.178:2	0/1:159,21:33:180:0.117:2	./.	./.	./.	./.	./.	./.
chr19	39228244	rs73038948	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:40,25:30:65:0.385:2	0/1:32,13:31:45:0.289:2	./.	0/1:33,37:29:70:0.529:2	0/1:57,29:30:86:0.337:2	./.	0/1:71,35:29:106:0.330:2	./.	./.	./.	./.
chr19	39229089	rs12983010	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,7:27:13:0.538:2	./.	./.	./.	./.	./.	0/1:2,3:25:5:0.600:2
chr19	39230748	rs34911882	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,22:32:50:0.440:2	./.	./.	./.	./.	./.	0/1:16,9:34:25:0.360:2
chr19	39233146	rs936524	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,133:28:133:1.00:2	0/1:1,74:29:75:0.987:2	0/1:0,19:30:19:1.00:2	0/1:0,182:28:182:1.00:2	0/1:0,190:28:190:1.00:2	0/1:94,95:28:189:0.503:2	0/1:1,185:28:186:0.995:2	0/1:113,75:28:188:0.399:2	0/1:97,86:29:183:0.470:2	0/1:94,83:29:177:0.469:2	0/1:110,82:28:192:0.427:2
chr19	39262622	rs187728017	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,3:32:48:0.065:2	./.	./.	./.
chr19	39263723	rs201931762	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,120:28:190:0.632:2	0/1:49,127:29:176:0.722:2	0/1:1,66:30:67:0.985:2	0/1:70,120:30:190:0.632:2	0/1:73,117:30:191:0.616:2	0/1:106,82:30:189:0.436:2	0/1:2,189:29:191:0.990:2	0/1:113,81:29:194:0.418:2	0/1:111,76:29:187:0.406:2	0/1:1,187:29:188:0.995:2	0/1:107,79:28:187:0.425:2
chr19	39264175	.	G	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:1,2:33:3:0.667:2	./.	0/1:5,3:32:8:0.375:2	0/1:3,7:30:10:0.700:2	./.	./.	./.	./.	./.	./.
chr19	39279824	rs113106533	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,3:31:6:0.500:2	0/1:1,3:32:4:0.750:2	./.	0/1:3,6:31:9:0.667:2	0/1:4,15:30:19:0.789:2	./.	./.	./.	./.	0/1:12,6:31:18:0.333:2	./.
chr19	39280276	rs201263690	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,121:29:173:0.699:2	0/1:63,121:28:184:0.658:2	0/1:0,61:30:61:1.00:2	0/1:57,124:30:181:0.685:2	0/1:65,117:31:182:0.643:2	0/1:113,82:31:195:0.421:2	0/1:1,171:29:172:0.994:2	0/1:109,80:29:189:0.423:2	0/1:87,85:29:173:0.494:2	0/1:0,162:30:162:1.00:2	0/1:109,68:29:178:0.384:2
chr19	39281377	rs183137923	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:100,10:28:110:0.091:2	0/1:61,9:29:70:0.129:2	./.	0/1:107,14:31:121:0.116:2	0/1:123,12:31:135:0.089:2	./.	./.	./.	./.	0/1:93,10:30:103:0.097:2	./.
chr19	39303552	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:26:35:0.114:2	0/1:29,4:27:33:0.121:2	./.	./.	./.
chr19	39307103	rs2229259	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,32:33:67:0.478:2	./.	./.
chr19	39307930	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,13:32:20:0.650:2	./.	./.	./.
chr19	39308190	rs15570	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,51:31:95:0.537:2	0/1:69,60:32:129:0.465:2	./.	./.	./.	./.	./.	./.
chr19	39322087	rs9419	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,15:28:36:0.417:2	0/1:12,7:30:19:0.368:2	./.	./.	./.	0/1:0,39:29:39:1.00:2	0/1:0,50:30:50:1.00:2	0/1:1,40:30:41:0.976:2	0/1:15,16:29:31:0.516:2	0/1:0,37:28:37:1.00:2	0/1:22,32:29:54:0.593:2
chr19	39322414	rs117820732	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,41:29:102:0.402:2	0/1:65,41:30:106:0.387:2	./.	./.	./.	./.	./.	./.
chr19	39327407	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,4:30:84:0.048:2	./.	./.	./.	./.	./.	./.
chr19	39360597	rs113728915	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:26,14:31:40:0.350:2	0/1:12,5:32:17:0.294:2	0/1:2,6:28:8:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	39379771	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,4:33:53:0.075:2	./.	./.	./.	./.	./.	./.	./.
chr19	39379906	rs11879029	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,8:32:17:0.471:2	./.	0/1:19,10:31:29:0.345:2	./.	./.	./.
chr19	39379953	rs45537332	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:33:35:0.114:2	./.	./.	./.	./.
chr19	39384105	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:30:97:0.041:2	./.	./.	./.	./.
chr19	39397904	rs147785336	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,7:32:23:0.304:2	0/1:8,6:33:14:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	39398218	rs367810334	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,16:31:26:0.615:2	./.	./.	./.	./.	./.	./.	./.
chr19	39416887	rs11544093	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,22:31:22:1.00:2	./.	./.	0/1:0,29:33:29:1.00:2	0/1:11,10:34:21:0.476:2	./.	./.
chr19	39433299	rs8113389	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,44:29:44:1.00:2	0/1:0,24:29:24:1.00:2	0/1:0,5:30:5:1.00:2	./.	0/1:0,56:28:56:1.00:2	0/1:0,67:28:67:1.00:2	0/1:57,33:28:90:0.367:2	0/1:0,63:29:63:1.00:2	0/1:0,61:30:61:1.00:2	0/1:32,18:28:50:0.360:2	0/1:0,40:28:40:1.00:2
chr19	39440918	rs2304117	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	./.	./.
chr19	39440966	rs2304118	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,6:33:6:1.00:2	./.	./.	./.
chr19	39521861	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,48:29:115:0.417:2	./.	./.	./.	./.	./.
chr19	39522706	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	39575987	rs544041	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	39589177	rs11881432	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	39589189	rs55878600	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:14,12:30:26:0.462:2	0/1:12,12:32:24:0.500:2	./.	0/1:9,13:30:22:0.591:2	./.	0/1:9,12:32:21:0.571:2	./.	./.	./.	0/1:11,4:32:15:0.267:2	./.
chr19	39590955	rs8110736	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,35:31:72:0.486:2	0/1:22,25:31:47:0.532:2	0/1:6,5:30:11:0.455:2	0/1:0,96:31:96:1.00:2	./.	0/1:0,88:31:88:1.00:2	0/1:2,120:31:122:0.984:2	0/1:0,99:31:99:1.00:2	./.	0/1:47,56:32:103:0.544:2	./.
chr19	39592138	rs1313617	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:18,14:29:32:0.438:2	0/1:13,5:31:18:0.278:2	./.	./.	0/1:2,35:28:37:0.946:2	./.	./.	./.	0/1:16,14:30:30:0.467:2	./.	0/1:13,24:30:37:0.649:2
chr19	39660277	rs75096376	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,10:31:19:0.526:2	./.	./.	./.	./.	./.	./.
chr19	39667293	rs11559034	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,29:31:49:0.592:2	./.	./.	./.
chr19	39688876	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,21:28:39:0.538:2	./.
chr19	39688901	rs12610093	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,22:30:22:1.00:2	0/1:0,22:32:22:1.00:2	./.	0/1:24,21:32:45:0.467:2	./.	0/1:24,18:32:42:0.429:2	0/1:24,10:32:34:0.294:2	0/1:29,15:32:44:0.341:2	./.	0/1:13,16:32:29:0.552:2	./.
chr19	39734734	rs148543092	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,51:30:93:0.548:2	./.	./.	./.
chr19	39735106	rs8103142	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,38:31:114:0.333:2	0/1:71,40:31:111:0.360:2	0/1:69,23:33:92:0.250:2	0/1:60,29:32:89:0.326:2	./.
chr19	39759826	rs115134580	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,13:27:128:0.102:2	./.	./.	0/1:82,11:26:93:0.118:2	./.
chr19	39760191	rs8103362	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:3,68:29:71:0.958:2	0/1:1,48:29:49:0.980:2	0/1:10,9:32:19:0.474:2	./.	0/1:2,115:29:117:0.983:2	./.	./.	0/1:88,83:29:171:0.485:2	./.	./.	0/1:51,34:31:85:0.400:2
chr19	39760435	rs59746524	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:32:5:0.800:2	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	0/1:25,4:32:29:0.138:2	./.	./.	./.
chr19	39760635	rs372089263	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,33:30:145:0.228:2	./.	./.
chr19	39787527	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:30:53:0.075:2	./.	./.	./.	./.
chr19	39788648	rs150964916	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,38:31:109:0.349:2	./.	./.	./.	./.	./.	./.	./.
chr19	39789115	rs30461	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,76:33:169:0.450:2	./.	./.	./.
chr19	39798402	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.
chr19	39826597	rs251905	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:13,18:31:31:0.581:2	./.	./.	./.	0/1:25,12:31:37:0.324:2	./.	./.	0/1:22,22:31:44:0.500:2	./.	./.	./.
chr19	39860387	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:182,5:30:187:0.027:2	./.	./.	./.	./.	./.	./.
chr19	39867076	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,4:31:37:0.108:2	./.	./.	./.
chr19	39870626	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:33:114:0.035:2	./.	./.
chr19	39876714	rs147781421	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,7:29:31:0.226:2	./.	./.	./.
chr19	39879663	rs40353	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:42,50:30:92:0.543:2	0/1:19,29:32:48:0.604:2	0/1:7,11:32:18:0.611:2	./.	0/1:53,49:31:102:0.480:2	./.	./.	0/1:45,50:32:95:0.526:2	./.	./.	./.
chr19	39879827	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:32:72:0.056:2	./.	./.
chr19	39880011	rs2074852	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,62:32:124:0.500:2	./.	./.	./.
chr19	39880293	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:32:115:0.035:2	./.
chr19	39899177	rs17885410	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,33:29:66:0.500:2	./.	./.	./.
chr19	39906985	rs10401595	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	0/1:0,46:33:46:1.00:2	./.	./.	./.	./.	./.	./.
chr19	39907036	rs2277743	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,34:32:34:1.00:2	./.	./.	./.	./.	./.	./.
chr19	39908574	rs35466645	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	0/1:0,15:30:15:1.00:2	./.	./.	./.	./.	./.	./.
chr19	39911296	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,45:29:99:0.455:2	./.	./.	./.	./.	./.
chr19	39913634	rs10407035	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,29:31:67:0.439:2	0/1:27,29:31:56:0.518:2	0/1:1,83:31:85:0.988:2	./.	./.	0/1:24,25:32:49:0.510:2
chr19	39914748	rs31726	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:49,39:32:88:0.443:2	0/1:20,23:32:43:0.535:2	./.	0/1:70,56:31:126:0.444:2	0/1:77,63:31:140:0.450:2	0/1:53,42:31:95:0.442:2	0/1:70,61:31:131:0.466:2	0/1:2,102:31:104:0.981:2	./.	./.	0/1:0,96:31:96:1.00:2
chr19	39915637	rs31727	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,11:31:26:0.423:2	0/1:2,4:29:6:0.667:2	./.	0/1:19,12:30:31:0.387:2	0/1:20,10:29:30:0.333:2	0/1:12,12:30:24:0.500:2	0/1:15,8:30:23:0.348:2	0/1:0,37:29:37:1.00:2	./.	./.	0/1:0,20:31:20:1.00:2
chr19	39915733	rs138077206	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:33:3:1.00:2	./.	./.	./.
chr19	39915758	rs31728	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,4:26:8:0.500:2	./.	./.	./.	./.	./.	0/1:0,4:25:4:1.00:2	./.	./.	0/1:0,2:30:2:1.00:2
chr19	39915876	rs202010025	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,35:30:57:0.614:2	./.	./.	./.	./.	./.
chr19	39923952	rs17627	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,40:30:66:0.606:2	./.	./.	./.	./.	./.	./.
chr19	39926509	rs17628	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:17,6:29:23:0.261:2	0/1:7,4:27:11:0.364:2	./.	0/1:16,19:31:35:0.543:2	./.	0/1:13,9:30:22:0.409:2	0/1:13,11:28:24:0.458:2	0/1:0,35:29:35:1.00:2	./.	./.	0/1:0,14:28:14:1.00:2
chr19	39926521	rs17626	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:16,4:30:20:0.200:2	0/1:6,4:32:10:0.400:2	./.	0/1:16,16:29:32:0.500:2	./.	0/1:11,8:28:19:0.421:2	0/1:18,10:27:28:0.357:2	0/1:0,26:29:26:1.00:2	./.	./.	0/1:0,13:29:13:1.00:2
chr19	39944082	rs1130180	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,18:32:37:0.486:2	0/1:9,13:31:22:0.591:2	./.	0/1:25,26:30:51:0.510:2	0/1:12,21:30:33:0.636:2	0/1:17,27:30:44:0.614:2	0/1:32,16:31:48:0.333:2	0/1:0,43:30:43:1.00:2	./.	./.	0/1:0,58:31:58:1.00:2
chr19	39955515	rs2304216	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:68,55:31:123:0.447:2	./.	./.	./.	0/1:0,111:32:111:1.00:2	./.	./.
chr19	39955533	rs2304217	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:37,35:32:72:0.486:2	0/1:30,18:32:48:0.375:2	./.	0/1:84,70:32:154:0.455:2	./.	./.	./.	./.	./.	./.	0/1:46,56:31:102:0.549:2
chr19	39971401	rs62120677	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,32:28:51:0.627:2	./.	./.	./.	./.	./.	./.
chr19	39971432	rs2304220	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:4,5:32:9:0.556:2	./.	0/1:20,14:31:34:0.412:2	./.	./.	./.	./.	./.	./.	0/1:7,12:31:19:0.632:2
chr19	39971443	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,13:27:24:0.542:2	./.	./.	./.	./.	./.	./.	./.
chr19	39978767	rs369800453	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,4:33:79:0.051:2	./.	./.	./.	./.	./.	./.	./.
chr19	39989915	rs373980582	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:28:5:0.800:2
chr19	39991237	rs2304223	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:59,36:29:95:0.379:2	0/1:35,29:29:64:0.453:2	./.	0/1:52,49:29:101:0.485:2	0/1:71,34:30:105:0.324:2	./.	./.	./.	./.	./.	0/1:0,95:29:95:1.00:2
chr19	39994711	rs1110627	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,54:30:88:0.614:2	0/1:24,14:30:38:0.368:2	./.	0/1:53,77:30:130:0.592:2	0/1:102,93:29:195:0.477:2	0/1:52,65:30:117:0.556:2	0/1:88,61:30:150:0.409:2	0/1:0,173:29:173:1.00:2	./.	./.	0/1:0,90:29:90:1.00:2
chr19	39996027	rs2304214	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:58,55:32:113:0.487:2	0/1:37,25:32:62:0.403:2	./.	0/1:69,80:31:149:0.537:2	0/1:88,95:32:183:0.519:2	./.	./.	./.	./.	./.	0/1:0,106:32:106:1.00:2
chr19	40006324	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,8:28:8:1.00:2	./.
chr19	40006628	rs145756298	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,39:30:69:0.565:2	./.	./.
chr19	40009396	rs56149652	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:33:6:0.500:2	0/1:0,8:32:8:1.00:2	./.	./.	./.
chr19	40023044	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,15:32:78:0.192:2	./.	./.	./.	./.	./.	./.	./.
chr19	40023308	rs1123301	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2
chr19	40030654	rs76765165	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,7:31:10:0.700:2	./.	./.	0/1:4,3:32:7:0.429:2	0/1:3,3:33:6:0.500:2	./.	./.	0/1:9,6:31:15:0.400:2
chr19	40030704	rs7252027	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,19:32:42:0.452:2
chr19	40030808	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,39:31:72:0.542:2	./.
chr19	40170053	rs8103033	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:1,86:32:87:0.989:2	0/1:0,43:32:43:1.00:2	0/1:2,6:27:8:0.750:2	./.	./.	./.	./.	0/1:68,63:31:131:0.481:2	./.	0/1:69,47:31:116:0.405:2	./.
chr19	40170103	rs11083532	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,32:32:65:0.492:2	./.	./.	0/1:35,47:33:82:0.573:2	./.	./.
chr19	40174236	rs7258833	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:77,67:33:144:0.465:2	0/1:61,43:33:104:0.413:2	0/1:0,10:32:10:1.00:2	0/1:85,64:32:149:0.430:2	0/1:69,37:32:106:0.349:2	./.	0/1:1,109:32:110:0.991:2	0/1:87,59:32:146:0.404:2	0/1:86,73:33:159:0.459:2	0/1:0,96:32:96:1.00:2	0/1:3,175:33:178:0.983:2
chr19	40196611	rs35541195	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,7:33:16:0.438:2	./.	./.	./.	0/1:94,93:33:187:0.497:2	./.	./.	0/1:90,84:33:174:0.483:2	./.
chr19	40196627	rs72480733	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,84:31:155:0.542:2	./.	./.	./.	./.	./.
chr19	40197924	rs4830	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:92,80:29:172:0.465:2	0/1:76,84:29:160:0.525:2	0/1:1,33:30:34:0.971:2	0/1:107,89:30:196:0.454:2	0/1:99,85:29:184:0.462:2	./.	0/1:0,187:29:187:1.00:2	0/1:106,87:30:194:0.451:2	0/1:114,84:31:198:0.424:2	0/1:2,165:30:167:0.988:2	0/1:1,177:29:179:0.994:2
chr19	40199914	rs10755	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,43:33:79:0.544:2	0/1:18,25:32:43:0.581:2	0/1:0,11:33:11:1.00:2	0/1:49,31:34:80:0.388:2	0/1:28,23:31:51:0.451:2	./.	0/1:0,67:32:67:1.00:2	0/1:46,26:33:72:0.361:2	0/1:52,29:34:81:0.358:2	0/1:0,82:33:82:1.00:2	0/1:0,76:33:76:1.00:2
chr19	40224986	rs384138	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,37:33:70:0.529:2	0/1:26,30:31:56:0.536:2	0/1:0,4:32:4:1.00:2	0/1:78,64:31:142:0.451:2	0/1:69,53:32:122:0.434:2	./.	0/1:0,141:32:143:1.00:2	0/1:80,98:32:178:0.551:2	0/1:67,56:32:123:0.455:2	0/1:0,97:32:98:1.00:2	0/1:0,151:32:151:1.00:2
chr19	40225646	rs17608	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,34:31:62:0.557:2	0/1:23,12:32:35:0.343:2	0/1:0,9:31:9:1.00:2	0/1:57,32:31:89:0.360:2	0/1:50,25:31:75:0.333:2	./.	0/1:0,93:31:93:1.00:2	0/1:66,41:31:107:0.383:2	0/1:46,46:32:92:0.500:2	0/1:0,52:31:52:1.00:2	0/1:0,61:32:61:1.00:2
chr19	40316422	rs200959786	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:16,4:24:20:0.200:2	./.	./.	./.	0/1:27,10:15:37:0.270:2	./.	./.	./.	./.	0/1:24,7:16:31:0.226:2	./.
chr19	40316442	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,5:18:25:0.200:2	./.	./.	./.
chr19	40322462	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,4:33:48:0.083:2	./.	./.	./.	./.	./.	./.
chr19	40357683	rs759120	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,83:29:190:0.437:2	./.	./.	./.
chr19	40357748	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:33:159:0.025:2	./.	./.
chr19	40360928	rs1053686	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,41:31:89:0.461:2	./.	./.	./.
chr19	40362796	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:32:180:0.022:2	./.	./.	./.
chr19	40362876	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:34:157:0.025:2	./.	./.	./.	./.	./.
chr19	40363020	rs741143	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,13:29:18:0.722:2	0/1:8,7:29:15:0.467:2	0/1:5,7:31:12:0.583:2	./.	./.	./.	./.
chr19	40363916	rs77005739	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,83:29:148:0.561:2	./.	./.	./.
chr19	40363926	rs3746013	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,12:33:18:0.667:2	./.	0/1:77,68:32:145:0.469:2	0/1:63,67:32:130:0.515:2	0/1:95,71:33:167:0.428:2	./.	./.	./.	0/1:59,47:31:106:0.443:2
chr19	40364011	rs78835791	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,37:32:71:0.521:2
chr19	40364280	rs113103150	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,42:31:80:0.525:2	./.	./.
chr19	40366245	rs146036971	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	./.	./.	./.
chr19	40366362	rs3855679	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,12:31:29:0.414:2	./.	./.	./.	0/1:28,15:33:43:0.349:2	0/1:29,14:31:43:0.326:2	0/1:0,29:32:29:1.00:2	0/1:0,37:31:37:1.00:2	0/1:10,15:33:25:0.600:2	0/1:12,22:32:34:0.647:2	0/1:2,17:31:19:0.895:2
chr19	40366374	rs2053089	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,14:29:49:0.286:2	./.	./.	./.
chr19	40367380	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2	./.	./.
chr19	40367442	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:153,31:32:185:0.168:2	0/1:156,25:32:181:0.138:2	./.	./.	./.	./.	0/1:173,20:33:193:0.104:2	./.	0/1:157,33:34:190:0.174:2	0/1:160,24:33:185:0.130:2	./.
chr19	40367444	rs201370318	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:163,26:33:189:0.138:2	0/1:148,32:31:180:0.178:2	./.	./.	./.	./.	0/1:168,25:32:193:0.130:2	0/1:164,24:33:188:0.128:2	0/1:159,31:33:190:0.163:2	0/1:151,38:32:191:0.201:2	0/1:149,26:33:175:0.149:2
chr19	40367555	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,12:32:94:0.128:2	./.	./.
chr19	40367556	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,19:32:105:0.181:2	./.	./.	./.	./.
chr19	40367567	rs140889878	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,5:29:27:0.185:2	./.	0/1:96,28:31:124:0.226:2	0/1:80,18:31:98:0.184:2	0/1:71,20:31:91:0.220:2	0/1:127,5:32:132:0.038:2	./.	./.	0/1:66,16:32:82:0.195:2
chr19	40367652	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:93,25:31:118:0.212:2	0/1:54,7:32:61:0.115:2	./.	0/1:92,76:31:168:0.452:2	0/1:104,32:31:136:0.235:2	0/1:124,63:30:187:0.337:2	./.	./.	0/1:95,22:32:117:0.188:2	0/1:86,10:32:96:0.104:2	0/1:54,8:30:62:0.129:2
chr19	40367656	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,31:29:189:0.164:2	./.	./.	./.	./.	./.
chr19	40367782	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,13:30:95:0.137:2
chr19	40367862	rs6508920	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:59,10:28:69:0.145:2	0/1:48,6:28:54:0.111:2	./.	./.	0/1:55,13:29:68:0.191:2	0/1:54,11:31:65:0.169:2	0/1:0,9:29:9:1.00:2	0/1:0,9:30:9:1.00:2	0/1:55,7:29:62:0.113:2	0/1:62,11:28:73:0.151:2	0/1:37,5:28:42:0.119:2
chr19	40368321	rs146255832	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,9:32:56:0.161:2	./.	./.
chr19	40368330	rs74540349	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,18:31:87:0.207:2	0/1:71,11:31:82:0.134:2	0/1:77,16:30:93:0.172:2	./.	./.	./.	0/1:56,10:29:66:0.152:2
chr19	40368358	rs146289015	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,48:31:131:0.366:2	./.	./.	./.	./.	./.	./.	./.
chr19	40368376	rs75204711	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:103,19:30:122:0.156:2	0/1:65,13:30:78:0.167:2	0/1:15,3:29:18:0.167:2	0/1:93,62:29:155:0.400:2	0/1:160,36:30:196:0.184:2	0/1:139,55:31:194:0.284:2	./.	./.	0/1:128,25:30:154:0.163:2	0/1:121,25:29:146:0.171:2	0/1:117,23:29:140:0.164:2
chr19	40368391	rs76288738	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:117,12:29:129:0.093:2	0/1:69,9:31:78:0.115:2	./.	./.	./.	./.	0/1:172,23:30:195:0.118:2	0/1:174,18:30:192:0.094:2	0/1:147,21:32:168:0.125:2	0/1:130,17:28:147:0.116:2	./.
chr19	40368395	rs28472548	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,89:31:129:0.690:2	0/1:36,48:32:84:0.571:2	0/1:9,15:31:24:0.625:2	0/1:99,67:31:166:0.404:2	0/1:54,137:31:191:0.717:2	0/1:52,132:30:184:0.717:2	0/1:25,165:31:190:0.868:2	0/1:56,128:31:184:0.696:2	0/1:76,94:32:170:0.553:2	0/1:60,83:31:143:0.580:2	0/1:53,115:31:168:0.685:2
chr19	40368478	rs77170940	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:95,7:34:102:0.069:2	0/1:65,7:33:72:0.097:2	./.	0/1:105,4:32:109:0.037:2	0/1:122,4:33:126:0.032:2	0/1:109,6:32:115:0.052:2	0/1:85,7:33:92:0.076:2	0/1:57,21:33:78:0.269:2	0/1:100,12:34:112:0.107:2	0/1:86,6:31:92:0.065:2	0/1:112,8:28:120:0.067:2
chr19	40368498	rs12610683	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:31:80:1.00:2	0/1:0,54:31:54:1.00:2	0/1:1,7:33:8:0.875:2	0/1:0,72:32:72:1.00:2	0/1:0,94:31:94:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,68:33:68:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,76:31:76:1.00:2
chr19	40368499	rs11083540	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:32:80:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,94:30:94:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,68:33:68:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,75:31:75:1.00:2
chr19	40368520	rs36079378	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:57,35:31:92:0.380:2	0/1:36,29:30:65:0.446:2	./.	./.	0/1:60,35:30:95:0.368:2	0/1:52,35:30:87:0.402:2	0/1:5,42:31:47:0.894:2	0/1:23,33:30:56:0.589:2	0/1:40,22:31:62:0.355:2	0/1:49,21:32:71:0.300:2	0/1:43,29:31:72:0.403:2
chr19	40368570	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,7:32:99:0.071:2	./.	./.	0/1:106,11:33:117:0.094:2	./.
chr19	40368619	rs150027077	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:163,23:31:186:0.124:2	0/1:130,15:31:145:0.103:2	0/1:30,7:30:37:0.189:2	0/1:136,54:30:190:0.284:2	0/1:178,18:30:196:0.092:2	0/1:153,38:30:191:0.199:2	./.	./.	0/1:169,24:32:193:0.124:2	0/1:165,27:31:192:0.141:2	0/1:163,21:31:184:0.114:2
chr19	40368697	rs368994804	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:157,13:30:171:0.076:2	0/1:122,16:31:138:0.116:2	0/1:35,4:30:39:0.103:2	0/1:104,26:31:130:0.200:2	0/1:173,8:32:181:0.044:2	0/1:134,26:31:160:0.163:2	./.	./.	0/1:155,10:32:165:0.061:2	0/1:126,10:31:136:0.074:2	0/1:118,14:31:133:0.106:2
chr19	40368733	.	G	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:133,6:33:139:0.043:2	0/1:61,5:33:66:0.076:2	./.	0/1:100,25:31:125:0.200:2	0/1:155,6:33:161:0.037:2	0/1:130,10:34:140:0.071:2	./.	0/1:143,5:33:148:0.034:2	0/1:151,10:33:161:0.062:2	0/1:98,12:30:110:0.109:2	0/1:109,9:33:118:0.076:2
chr19	40368844	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,8:33:135:0.060:2	./.	0/1:96,5:33:101:0.050:2	0/1:60,4:32:64:0.063:2	./.
chr19	40370213	rs144686927	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:174,10:29:184:0.054:2	0/1:174,19:31:193:0.098:2	0/1:94,14:31:108:0.130:2	./.	0/1:180,8:32:188:0.043:2	0/1:179,14:32:193:0.073:2	0/1:151,26:31:177:0.147:2	0/1:145,34:31:179:0.190:2	0/1:168,20:32:188:0.106:2	0/1:173,17:31:190:0.089:2	0/1:167,22:32:189:0.116:2
chr19	40370273	rs146481015	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:105,63:29:168:0.375:2	0/1:96,76:31:172:0.442:2	0/1:93,29:30:122:0.238:2	./.	0/1:151,28:30:179:0.156:2	0/1:145,37:28:182:0.203:2	0/1:52,114:29:166:0.687:2	0/1:12,128:30:140:0.914:2	0/1:84,96:30:180:0.533:2	0/1:103,77:30:180:0.428:2	0/1:146,35:30:181:0.193:2
chr19	40370296	rs149092429	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,9:32:145:0.062:2	./.	./.	./.
chr19	40370297	rs142203788	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,9:31:145:0.062:2	./.	./.	./.
chr19	40370312	rs151225679	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:169,10:33:179:0.056:2	0/1:165,7:32:172:0.041:2	./.	./.	./.	0/1:180,8:32:188:0.043:2	0/1:154,20:31:174:0.115:2	0/1:117,35:33:152:0.230:2	0/1:172,11:34:183:0.060:2	0/1:166,9:32:175:0.051:2	0/1:167,10:35:177:0.056:2
chr19	40370346	rs140913216	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:160,17:32:177:0.096:2	0/1:152,23:32:175:0.131:2	0/1:64,5:32:69:0.072:2	./.	0/1:172,9:32:181:0.050:2	0/1:174,10:32:184:0.054:2	0/1:146,36:32:182:0.198:2	0/1:114,54:32:168:0.321:2	0/1:158,21:32:179:0.117:2	0/1:166,19:30:185:0.103:2	0/1:160,16:32:176:0.091:2
chr19	40370445	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:145,34:31:179:0.190:2	./.	./.	./.	./.	./.	./.	./.
chr19	40370459	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:32:168:0.024:2	./.	./.	./.	./.	./.
chr19	40370471	rs146362587	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:112,49:28:162:0.304:2	0/1:78,33:30:112:0.297:2	./.	./.	0/1:138,24:30:163:0.148:2	0/1:137,40:29:177:0.226:2	0/1:63,95:29:159:0.601:2	0/1:109,74:30:183:0.404:2	0/1:94,52:29:148:0.356:2	0/1:122,59:29:185:0.326:2	0/1:113,27:29:140:0.193:2
chr19	40373950	rs200958848	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:170,8:32:178:0.045:2	0/1:177,6:29:183:0.033:2	./.	./.	0/1:184,14:30:198:0.071:2	0/1:184,10:33:194:0.052:2	0/1:141,16:31:157:0.102:2	./.	0/1:165,12:33:177:0.068:2	./.	0/1:182,4:34:187:0.022:2
chr19	40374023	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:170,6:31:176:0.034:2	0/1:184,10:32:194:0.052:2	./.	./.	./.	./.	./.	./.	0/1:178,7:30:185:0.038:2	0/1:186,6:31:192:0.031:2	./.
chr19	40374025	.	A	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:169,6:23:175:0.034:2	0/1:183,10:32:193:0.052:2	./.	./.	./.	./.	./.	./.	0/1:176,7:29:184:0.038:2	0/1:183,7:26:191:0.037:2	./.
chr19	40374034	rs138587194	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:80,100:30:180:0.556:2	0/1:88,99:29:187:0.529:2	0/1:67,42:30:109:0.385:2	0/1:116,71:32:187:0.380:2	0/1:149,39:30:188:0.207:2	0/1:149,43:30:192:0.224:2	0/1:143,51:31:194:0.263:2	0/1:85,101:32:186:0.543:2	0/1:123,63:31:186:0.339:2	0/1:97,87:30:184:0.473:2	0/1:129,56:30:185:0.303:2
chr19	40374045	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:180,8:30:188:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr19	40374072	rs147259660	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,27:29:181:0.149:2
chr19	40376662	rs79630345	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:166,21:33:187:0.112:2	0/1:177,15:33:192:0.078:2	0/1:63,16:33:79:0.203:2	./.	0/1:152,41:33:193:0.212:2	0/1:165,25:32:190:0.132:2	0/1:103,95:33:198:0.480:2	0/1:85,111:33:196:0.566:2	0/1:171,22:34:193:0.114:2	0/1:175,16:32:191:0.084:2	0/1:164,16:34:180:0.089:2
chr19	40376675	rs77872255	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:157,33:31:191:0.174:2	0/1:158,35:31:193:0.181:2	0/1:64,17:31:81:0.210:2	0/1:137,57:30:194:0.294:2	0/1:155,37:30:192:0.193:2	0/1:161,32:30:193:0.166:2	./.	./.	./.	0/1:150,42:31:192:0.219:2	0/1:146,37:30:183:0.202:2
chr19	40376811	rs4802062	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:149,26:31:175:0.149:2	0/1:145,18:30:163:0.110:2	./.	./.	./.	./.	0/1:120,29:30:149:0.195:2	./.	0/1:146,35:31:181:0.193:2	0/1:155,30:31:185:0.162:2	./.
chr19	40376880	rs75009537	T	G,C	.	PASS	AC=1,9;AF=0.033,0.300;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0/2:30:67:0.254:2	0/2:30:33:0.242:2	0/2:29:16:0.250:2	./.	0/2:26:83:0.518:2	0/2:27:76:0.487:2	0/2:27:65:0.892:2	0/2:32:22:0.857:2	0/2:31:72:0.264:2	0/2:30:58:0.293:2	0/1:31:81:0.513:2
chr19	40376881	rs74819672	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:48,17:31:65:0.262:2	0/1:25,8:30:33:0.242:2	./.	./.	./.	./.	0/1:54,13:30:67:0.194:2	0/1:3,17:33:20:0.850:2	0/1:52,19:31:71:0.268:2	0/1:41,17:32:58:0.293:2	./.
chr19	40376900	rs149109818	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:27:40:0.100:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	40376912	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,14:32:66:0.212:2	./.	./.	./.
chr19	40376946	rs139112212	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:107,21:30:128:0.164:2	0/1:53,18:31:71:0.254:2	0/1:21,7:29:28:0.250:2	0/1:98,81:29:179:0.453:2	0/1:130,59:29:189:0.312:2	0/1:138,39:29:178:0.220:2	./.	./.	./.	0/1:76,32:28:108:0.296:2	0/1:98,34:28:133:0.258:2
chr19	40377034	rs201304305	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:144,50:32:194:0.258:2	0/1:151,43:31:194:0.222:2	0/1:65,6:32:71:0.085:2	0/1:103,93:31:196:0.474:2	0/1:153,44:31:197:0.223:2	0/1:157,33:31:190:0.174:2	./.	./.	./.	0/1:134,53:31:187:0.283:2	0/1:147,32:32:179:0.179:2
chr19	40377117	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,42:31:198:0.212:2	./.	./.	./.
chr19	40377198	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,10:32:121:0.083:2	./.	./.	./.	./.	0/1:116,5:31:121:0.041:2	./.	./.	0/1:87,5:31:92:0.054:2	./.	./.
chr19	40380638	.	C	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:17,14:31:31:0.452:2	0/1:16,11:29:27:0.407:2	./.	./.	./.	./.	0/1:18,21:30:39:0.538:2	./.	0/1:15,24:31:39:0.615:2	0/1:27,14:31:41:0.341:2	./.
chr19	40382736	rs200801843	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,8:29:26:0.308:2	./.	./.	0/1:35,14:31:49:0.286:2	./.
chr19	40383695	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:159,27:30:187:0.145:2	0/1:156,27:30:183:0.148:2	./.	./.	./.	./.	0/1:161,33:32:194:0.170:2	./.	0/1:152,41:32:194:0.212:2	0/1:173,16:31:190:0.085:2	./.
chr19	40383697	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:158,32:32:190:0.168:2	0/1:160,26:32:186:0.140:2	./.	./.	./.	./.	0/1:167,25:32:192:0.130:2	0/1:166,19:33:185:0.103:2	0/1:155,40:33:196:0.205:2	0/1:162,28:32:191:0.147:2	0/1:160,21:32:181:0.116:2
chr19	40383779	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:137,11:16:148:0.074:2	./.	./.	./.	./.	./.	./.	./.
chr19	40383808	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,12:32:105:0.114:2	./.	./.
chr19	40383809	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,14:32:110:0.127:2	./.	./.	./.	./.
chr19	40383820	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,5:32:28:0.179:2	./.	0/1:90,23:30:113:0.204:2	0/1:80,22:32:102:0.216:2	0/1:77,13:32:90:0.144:2	./.	./.	./.	0/1:61,17:32:78:0.218:2
chr19	40383905	rs145218790	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:88,24:32:112:0.214:2	0/1:53,15:32:68:0.221:2	./.	0/1:103,59:31:162:0.364:2	0/1:123,34:31:157:0.217:2	0/1:120,71:30:191:0.372:2	./.	./.	0/1:80,16:31:96:0.167:2	0/1:88,22:31:110:0.200:2	0/1:48,14:32:62:0.226:2
chr19	40383909	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,34:30:196:0.173:2	./.	./.	./.	./.	./.
chr19	40384035	rs367618328	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,27:32:155:0.174:2
chr19	40384094	.	T	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:134,15:14:149:0.101:2	./.	./.	./.	./.	./.	0/1:135,19:14:154:0.123:2	0/1:152,14:15:166:0.084:2	0/1:136,20:12:157:0.128:2	0/1:131,16:12:147:0.109:2	./.
chr19	40384605	rs143306165	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:19,6:26:25:0.240:2	0/1:3,3:27:6:0.500:2	./.	./.	./.	./.	0/1:19,7:25:26:0.269:2	0/1:0,23:26:23:1.00:2	0/1:0,3:28:3:1.00:2	./.	./.
chr19	40384623	rs151293840	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,9:23:28:0.321:2	0/1:7,4:28:11:0.364:2	./.	0/1:42,7:27:49:0.143:2	0/1:60,7:25:67:0.104:2	0/1:14,4:26:18:0.222:2	0/1:30,10:21:40:0.250:2	0/1:0,26:26:26:1.00:2	0/1:0,8:26:8:1.00:2	0/1:24,9:27:33:0.273:2	0/1:24,5:25:29:0.172:2
chr19	40384635	rs200682066	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:29,3:30:32:0.094:2	0/1:18,3:33:21:0.143:2	./.	0/1:47,13:30:60:0.217:2	./.	0/1:20,6:31:26:0.231:2	./.	./.	./.	0/1:35,7:30:42:0.167:2	0/1:34,5:32:39:0.128:2
chr19	40384650	rs201415831	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:33,8:29:41:0.195:2	0/1:23,3:31:26:0.115:2	./.	./.	./.	./.	0/1:64,9:27:73:0.123:2	0/1:57,8:30:65:0.123:2	0/1:15,8:29:23:0.348:2	0/1:50,4:31:54:0.074:2	./.
chr19	40384654	rs140677440	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,13:31:42:0.310:2	0/1:19,11:31:30:0.367:2	./.	0/1:52,15:31:67:0.224:2	0/1:90,23:31:113:0.204:2	0/1:18,26:30:44:0.591:2	0/1:58,16:31:74:0.216:2	0/1:17,55:32:72:0.764:2	0/1:12,13:31:25:0.520:2	0/1:40,15:31:55:0.273:2	0/1:40,13:32:53:0.245:2
chr19	40384779	rs199959669	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:69,4:31:73:0.055:2	0/1:32,4:33:36:0.111:2	0/1:11,3:31:14:0.214:2	./.	./.	./.	./.	0/1:80,7:29:87:0.080:2	./.	./.	./.
chr19	40384784	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,8:32:55:0.145:2
chr19	40384829	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,23:31:86:0.267:2	./.	./.	0/1:82,15:31:97:0.155:2	./.
chr19	40384878	rs201065190	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:135,29:30:165:0.177:2	0/1:85,29:32:114:0.254:2	0/1:22,6:31:28:0.214:2	0/1:120,71:31:191:0.372:2	0/1:149,41:31:190:0.216:2	0/1:103,84:30:187:0.449:2	./.	./.	0/1:108,43:31:152:0.285:2	0/1:147,28:31:176:0.160:2	0/1:123,26:31:149:0.174:2
chr19	40384956	.	G	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,31:32:122:0.254:2	0/1:60,17:31:77:0.221:2	0/1:13,7:28:20:0.350:2	0/1:70,52:31:123:0.426:2	0/1:104,31:31:135:0.230:2	0/1:52,76:30:128:0.594:2	./.	./.	0/1:67,46:31:113:0.407:2	0/1:88,37:31:125:0.296:2	0/1:95,30:31:125:0.240:2
chr19	40385078	.	T	C	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:8,11:31:19:0.579:2	0/1:8,8:31:16:0.500:2	./.	./.	0/1:37,4:30:41:0.098:2	./.	0/1:20,10:32:30:0.333:2	0/1:1,2:32:3:0.667:2	0/1:0,6:33:6:1.00:2	0/1:11,12:31:23:0.522:2	0/1:27,4:33:31:0.129:2
chr19	40386464	.	G	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:166,12:33:178:0.067:2	0/1:176,15:31:191:0.079:2	0/1:103,7:31:110:0.064:2	./.	0/1:178,12:32:190:0.063:2	0/1:174,15:31:189:0.079:2	0/1:153,28:30:181:0.155:2	0/1:154,31:32:185:0.168:2	0/1:158,26:33:184:0.141:2	0/1:181,13:31:194:0.067:2	0/1:162,14:33:176:0.080:2
chr19	40386524	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:112,62:30:174:0.356:2	0/1:106,71:30:177:0.401:2	0/1:100,22:29:122:0.180:2	./.	0/1:149,37:29:186:0.199:2	0/1:137,38:28:175:0.217:2	0/1:44,118:30:162:0.728:2	0/1:11,133:29:144:0.924:2	0/1:101,79:31:180:0.439:2	0/1:109,68:30:177:0.384:2	0/1:143,34:29:177:0.192:2
chr19	40386547	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,7:30:147:0.048:2	./.	./.	./.
chr19	40386548	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,7:28:147:0.048:2	./.	./.	./.
chr19	40386563	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:164,7:33:171:0.041:2	./.	./.	./.	./.	0/1:165,5:34:170:0.029:2	0/1:149,12:33:161:0.075:2	0/1:113,35:33:148:0.236:2	./.	0/1:161,10:33:171:0.058:2	0/1:158,10:31:168:0.060:2
chr19	40386597	.	G	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:161,19:31:180:0.106:2	0/1:144,20:32:164:0.122:2	0/1:65,4:30:69:0.058:2	./.	0/1:175,17:29:192:0.089:2	0/1:166,21:31:188:0.112:2	0/1:145,47:33:192:0.245:2	0/1:114,70:32:184:0.380:2	0/1:176,12:32:188:0.064:2	0/1:161,30:33:191:0.157:2	0/1:165,19:32:184:0.103:2
chr19	40386696	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,34:31:178:0.191:2	./.	./.	./.	./.	./.	./.	./.
chr19	40386722	.	G	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:112,43:28:157:0.277:2	0/1:80,30:29:110:0.273:2	0/1:18,5:30:23:0.217:2	./.	0/1:154,33:29:187:0.176:2	0/1:166,25:29:191:0.131:2	0/1:74,91:29:166:0.552:2	0/1:86,87:30:173:0.503:2	0/1:103,53:29:160:0.340:2	0/1:125,49:28:175:0.282:2	0/1:121,18:29:140:0.129:2
chr19	40389657	rs148187888	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:155,19:30:174:0.109:2	0/1:90,7:33:97:0.072:2	./.	./.	./.	./.	./.	0/1:163,24:28:187:0.128:2	0/1:179,13:31:192:0.068:2	0/1:159,16:31:175:0.091:2	./.
chr19	40389741	rs141158749	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:124,56:29:180:0.311:2	0/1:121,66:27:187:0.353:2	0/1:131,13:30:144:0.090:2	0/1:105,83:29:188:0.441:2	0/1:167,23:31:190:0.121:2	0/1:169,18:29:188:0.096:2	0/1:175,14:28:189:0.074:2	0/1:125,65:30:190:0.342:2	0/1:150,41:30:191:0.215:2	0/1:134,57:29:192:0.298:2	0/1:142,49:29:191:0.257:2
chr19	40389752	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.
chr19	40389779	rs142533219	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,24:31:188:0.128:2
chr19	40392008	rs201020361	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:143,10:32:154:0.065:2	0/1:80,9:31:89:0.101:2	./.	./.	0/1:184,13:32:197:0.066:2	0/1:171,21:31:192:0.109:2	0/1:173,24:31:197:0.122:2	0/1:176,19:31:195:0.097:2	0/1:80,11:29:91:0.121:2	0/1:152,13:29:165:0.079:2	0/1:134,15:31:149:0.101:2
chr19	40392182	rs202122337	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,9:24:174:0.052:2	0/1:185,11:29:196:0.056:2	./.
chr19	40392347	rs139175656	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:29:3:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr19	40392359	rs56242719	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:29:62:1.00:2	0/1:0,31:29:31:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,166:29:166:1.00:2	0/1:0,158:29:158:1.00:2	0/1:2,155:28:157:0.987:2	0/1:0,172:29:172:1.00:2	0/1:0,69:29:69:1.00:2	0/1:2,50:29:52:0.962:2	0/1:0,81:29:81:1.00:2
chr19	40392360	rs200977347	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:30:5:1.00:2	./.	./.	./.	./.	./.	0/1:50,4:32:54:0.074:2	0/1:78,5:27:83:0.060:2
chr19	40392482	rs62108883	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,56:33:60:0.933:2	0/1:0,31:33:31:1.00:2	./.	0/1:1,63:33:64:0.984:2	0/1:141,20:32:161:0.124:2	0/1:136,30:31:166:0.181:2	0/1:109,27:33:136:0.199:2	0/1:0,105:33:105:1.00:2	0/1:0,25:34:25:1.00:2	0/1:0,70:32:70:1.00:2	0/1:124,25:34:149:0.168:2
chr19	40392496	rs143680639	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:61,22:31:83:0.265:2	0/1:32,13:31:45:0.289:2	./.	./.	./.	./.	0/1:128,24:31:152:0.158:2	./.	0/1:25,19:30:44:0.432:2	0/1:76,37:30:113:0.327:2	./.
chr19	40392585	rs79253448	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:91,31:30:123:0.254:2	0/1:59,19:29:78:0.244:2	./.	./.	./.	./.	0/1:51,31:30:82:0.378:2	0/1:168,8:30:176:0.045:2	0/1:0,41:30:41:1.00:2	0/1:74,45:30:119:0.378:2	./.
chr19	40392588	rs62108885	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,37:30:160:0.231:2	./.	./.	./.
chr19	40392597	rs149905926	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,52:31:172:0.302:2	./.	./.	./.
chr19	40392631	rs80068592	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:75,79:28:154:0.513:2	0/1:46,54:30:100:0.540:2	0/1:14,11:26:25:0.440:2	0/1:45,129:28:174:0.741:2	0/1:131,61:27:192:0.318:2	0/1:111,74:27:186:0.400:2	./.	./.	./.	0/1:93,63:28:156:0.404:2	0/1:89,69:29:158:0.437:2
chr19	40392719	rs200664901	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:127,65:32:192:0.339:2	0/1:142,46:31:188:0.245:2	0/1:55,15:31:70:0.214:2	0/1:103,91:31:194:0.469:2	0/1:161,36:32:197:0.183:2	0/1:154,42:30:196:0.214:2	./.	./.	./.	0/1:139,53:32:192:0.276:2	0/1:140,41:30:182:0.227:2
chr19	40392802	rs149844303	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,47:30:196:0.240:2	./.	./.	./.
chr19	40392883	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,4:33:112:0.036:2	./.	./.	./.	./.	./.	./.
chr19	40396323	rs369105601	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:19,25:29:44:0.568:2	0/1:20,7:31:27:0.259:2	./.	./.	./.	./.	0/1:19,14:29:33:0.424:2	./.	0/1:14,21:30:35:0.600:2	0/1:18,11:28:30:0.379:2	./.
chr19	40399383	rs138090709	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:62,14:32:76:0.184:2	0/1:63,16:30:79:0.203:2	./.	./.	./.	./.	0/1:97,19:31:116:0.164:2	./.	0/1:81,10:32:91:0.110:2	0/1:72,6:30:78:0.077:2	./.
chr19	40399385	rs201168964	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:57,17:31:74:0.230:2	0/1:69,9:32:78:0.115:2	./.	./.	./.	./.	0/1:91,20:32:111:0.180:2	0/1:89,10:31:99:0.101:2	0/1:62,26:33:88:0.295:2	0/1:60,10:31:70:0.143:2	0/1:76,16:32:92:0.174:2
chr19	40399496	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,4:31:13:0.308:2	./.	./.
chr19	40399497	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,7:32:28:0.250:2	./.	./.	./.	./.
chr19	40399508	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,9:31:22:0.409:2	0/1:25,9:32:34:0.265:2	0/1:22,8:30:30:0.267:2	./.	./.	./.	0/1:18,7:32:25:0.280:2
chr19	40399593	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:105,15:32:120:0.125:2	0/1:59,16:32:75:0.213:2	./.	0/1:93,87:30:180:0.483:2	0/1:104,32:31:136:0.235:2	0/1:113,81:31:194:0.418:2	./.	./.	0/1:72,20:31:92:0.217:2	0/1:75,17:31:92:0.185:2	0/1:41,15:32:56:0.268:2
chr19	40399597	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,37:30:195:0.190:2	./.	./.	./.	./.	./.
chr19	40399723	rs200769768	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,11:32:106:0.104:2
chr19	40399782	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,8:19:81:0.099:2	./.	./.	./.	./.
chr19	40400293	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,7:23:26:0.269:2	0/1:0,21:27:21:1.00:2	0/1:1,3:22:4:0.750:2	0/1:3,6:27:9:0.667:2	./.
chr19	40400311	rs368528156	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,7:24:23:0.304:2	0/1:4,4:26:8:0.500:2	./.	0/1:53,6:28:59:0.102:2	0/1:40,7:24:47:0.149:2	0/1:18,8:25:26:0.308:2	0/1:26,11:24:37:0.297:2	0/1:1,33:26:34:0.971:2	0/1:1,7:26:8:0.875:2	0/1:5,8:24:13:0.615:2	0/1:27,6:25:33:0.182:2
chr19	40400323	rs201056589	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,4:26:32:0.125:2	./.	./.	0/1:60,12:32:72:0.167:2	0/1:47,6:32:53:0.113:2	0/1:25,8:31:33:0.242:2	./.	./.	0/1:17,3:32:20:0.150:2	./.	./.
chr19	40400338	rs202095416	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:6,4:30:10:0.400:2	./.	./.	./.	./.	0/1:63,6:29:69:0.087:2	0/1:68,7:30:75:0.093:2	0/1:29,10:32:39:0.256:2	0/1:26,6:29:32:0.188:2	./.
chr19	40400342	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,18:32:43:0.419:2	./.	./.	0/1:70,25:32:95:0.263:2	0/1:44,13:30:57:0.228:2	0/1:25,20:30:45:0.444:2	0/1:48,27:31:75:0.360:2	0/1:29,48:31:77:0.623:2	0/1:13,26:32:39:0.667:2	0/1:19,16:31:36:0.457:2	0/1:37,12:31:49:0.245:2
chr19	40400467	rs200302206	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:47,6:29:53:0.113:2	./.	./.	./.	0/1:62,4:28:66:0.061:2	0/1:65,7:32:72:0.097:2	./.	./.	./.	./.	./.
chr19	40400472	rs201254960	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,28:30:75:0.373:2
chr19	40400517	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,21:31:87:0.244:2	./.	./.	0/1:74,15:31:89:0.169:2	./.
chr19	40400566	rs201399527	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:86,29:29:115:0.252:2	0/1:50,23:32:73:0.315:2	0/1:16,8:31:24:0.333:2	0/1:108,79:31:187:0.422:2	0/1:164,29:31:193:0.150:2	0/1:104,82:31:186:0.441:2	./.	./.	0/1:128,39:30:168:0.234:2	0/1:141,42:31:183:0.230:2	0/1:140,32:29:172:0.186:2
chr19	40400644	.	G	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,19:31:90:0.211:2	0/1:42,15:32:57:0.263:2	0/1:17,8:31:25:0.320:2	0/1:77,67:31:144:0.465:2	0/1:93,41:30:134:0.306:2	0/1:62,66:29:128:0.516:2	./.	./.	0/1:76,43:30:119:0.361:2	0/1:92,40:30:132:0.303:2	0/1:105,27:30:132:0.205:2
chr19	40400766	rs200020918	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:6,5:26:11:0.455:2	./.	./.	./.	0/1:19,3:32:22:0.136:2	0/1:12,3:32:15:0.200:2	./.	0/1:0,15:32:15:1.00:2	0/1:8,10:31:18:0.556:2	./.
chr19	40402152	.	G	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:167,15:32:182:0.082:2	0/1:170,17:32:187:0.091:2	0/1:94,15:31:109:0.138:2	./.	0/1:179,5:29:184:0.027:2	0/1:171,13:31:184:0.071:2	0/1:158,35:31:194:0.181:2	0/1:135,40:31:176:0.229:2	0/1:167,21:33:188:0.112:2	0/1:173,16:32:189:0.085:2	0/1:175,13:32:188:0.069:2
chr19	40402212	rs146299561	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:108,75:30:183:0.410:2	0/1:107,69:30:176:0.392:2	0/1:96,27:30:123:0.220:2	./.	0/1:156,25:29:181:0.138:2	0/1:142,30:30:172:0.174:2	0/1:44,116:30:160:0.725:2	0/1:12,135:29:147:0.918:2	0/1:102,75:31:177:0.424:2	0/1:105,71:30:176:0.403:2	0/1:139,37:30:176:0.210:2
chr19	40402235	rs139552350	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,9:28:146:0.062:2	./.	./.	./.
chr19	40402236	rs144270377	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,9:28:147:0.061:2	./.	./.	./.
chr19	40402251	rs146098284	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:170,7:32:177:0.040:2	0/1:162,9:32:171:0.053:2	./.	./.	0/1:182,5:31:187:0.027:2	0/1:173,9:32:182:0.049:2	0/1:156,15:33:171:0.088:2	0/1:119,39:31:158:0.247:2	0/1:168,13:34:181:0.072:2	0/1:175,5:32:181:0.028:2	0/1:169,5:35:174:0.029:2
chr19	40402285	rs148759495	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:165,18:32:183:0.098:2	0/1:149,22:32:171:0.129:2	0/1:70,6:33:76:0.079:2	./.	0/1:174,14:33:188:0.074:2	0/1:180,10:32:190:0.053:2	0/1:154,28:32:182:0.154:2	0/1:117,55:32:172:0.320:2	0/1:160,23:33:183:0.126:2	0/1:162,13:32:175:0.074:2	0/1:168,12:33:180:0.067:2
chr19	40402384	rs200316685	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:153,30:31:183:0.164:2	./.	./.	./.	./.	./.	./.	./.
chr19	40402410	rs2023286	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:119,57:28:176:0.324:2	0/1:78,45:30:123:0.366:2	0/1:18,5:30:23:0.217:2	./.	0/1:120,30:29:150:0.200:2	0/1:141,32:29:174:0.185:2	0/1:78,80:29:158:0.506:2	0/1:117,68:29:187:0.368:2	0/1:103,55:29:158:0.348:2	0/1:101,45:29:146:0.308:2	0/1:128,20:29:149:0.135:2
chr19	40405997	rs7249743	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,19:28:190:0.100:2	./.	./.	0/1:180,13:27:193:0.067:2
chr19	40405999	rs7248839	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,18:27:189:0.095:2	./.	./.	0/1:180,13:30:193:0.067:2
chr19	40406019	rs2355719	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:109,69:30:178:0.388:2	0/1:94,80:30:174:0.460:2	0/1:75,53:29:128:0.414:2	0/1:39,152:29:191:0.796:2	0/1:120,71:30:191:0.372:2	0/1:25,162:30:188:0.866:2	./.	./.	0/1:106,89:31:195:0.456:2	0/1:112,77:31:189:0.407:2	0/1:37,146:29:184:0.798:2
chr19	40406029	rs61735676	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,97:32:196:0.495:2	./.	./.	./.
chr19	40406046	rs149377988	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,24:31:175:0.137:2
chr19	40408128	rs4803310	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:95,76:31:171:0.444:2	0/1:61,55:31:116:0.474:2	./.	./.	./.	./.	0/1:91,85:31:176:0.483:2	./.	0/1:87,93:31:180:0.517:2	0/1:102,78:32:180:0.433:2	./.
chr19	40408268	rs34938990	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:153,26:31:179:0.145:2	0/1:73,15:32:88:0.170:2	./.	0/1:6,52:30:58:0.897:2	0/1:132,21:31:154:0.137:2	0/1:0,36:30:36:1.00:2	./.	./.	0/1:123,23:31:146:0.158:2	0/1:109,21:30:130:0.162:2	0/1:142,31:28:174:0.179:2
chr19	40408285	.	G	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:188,4:34:192:0.021:2	0/1:111,7:33:118:0.059:2	0/1:16,3:31:21:0.158:2	./.	0/1:187,6:28:193:0.031:2	0/1:82,10:32:92:0.109:2	0/1:176,18:32:194:0.093:2	0/1:157,35:32:192:0.182:2	0/1:189,4:34:193:0.021:2	0/1:172,10:31:182:0.055:2	./.
chr19	40408298	rs200357016	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:180,10:30:190:0.053:2	0/1:107,20:31:127:0.157:2	./.	0/1:106,43:31:149:0.289:2	0/1:176,14:30:191:0.074:2	0/1:113,20:30:133:0.150:2	./.	./.	./.	0/1:183,14:31:198:0.071:2	0/1:184,9:32:194:0.047:2
chr19	40408434	rs200942765	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:167,6:33:173:0.035:2	0/1:155,11:32:166:0.066:2	./.	./.	./.	./.	0/1:172,18:31:190:0.095:2	./.	0/1:169,16:32:185:0.086:2	0/1:159,20:29:179:0.112:2	./.
chr19	40408532	rs36106401	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,103:32:187:0.551:2	./.	./.	./.
chr19	40408545	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,18:11:172:0.106:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	40408821	rs11083543	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,31:32:85:0.365:2	0/1:29,27:32:56:0.482:2	0/1:10,3:31:13:0.231:2	0/1:12,95:32:107:0.888:2	0/1:60,41:32:101:0.406:2	0/1:13,77:32:90:0.856:2	./.	./.	0/1:57,34:32:91:0.374:2	0/1:62,30:33:92:0.326:2	0/1:46,36:32:82:0.439:2
chr19	40420087	rs12460562	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,21:30:45:0.467:2	0/1:8,6:29:14:0.429:2	./.	./.	./.	0/1:34,30:33:64:0.469:2	./.	0/1:36,41:32:77:0.532:2	0/1:30,31:33:61:0.508:2	./.	./.
chr19	40433467	rs148409442	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,27:30:70:0.386:2	./.	./.	./.	./.	./.	./.
chr19	40480501	rs11542840	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,24:32:51:0.471:2
chr19	40519905	rs2111543	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,51:32:109:0.468:2
chr19	40519935	rs2111544	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,72:30:154:0.468:2
chr19	40540429	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,3:32:44:0.070:2	./.	./.	./.	./.
chr19	40540441	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,3:32:40:0.075:2	./.	./.	./.	./.
chr19	40540454	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,3:33:34:0.088:2	./.	./.	./.	./.
chr19	40541066	rs61730564	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,16:32:40:0.400:2	./.	./.	./.	./.	./.	./.	./.
chr19	40541382	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:32:41:0.098:2	./.	./.	./.	./.
chr19	40541414	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:32:70:0.057:2	./.	./.	./.	./.
chr19	40541806	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,5:30:81:0.062:2	./.
chr19	40554584	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,5:30:86:0.058:2	./.	./.	./.	./.	./.	./.
chr19	40580426	rs399405	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,89:33:193:0.461:2
chr19	40580498	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:154,4:33:158:0.025:2	./.	./.	./.	./.	./.	./.
chr19	40580552	rs200594600	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:111,5:31:116:0.043:2	0/1:131,4:30:135:0.030:2	./.	0/1:125,5:28:130:0.038:2	0/1:180,7:31:187:0.037:2	./.	0/1:128,5:27:134:0.038:2
chr19	40580582	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,5:32:72:0.069:2	./.	./.	./.	./.	./.	0/1:121,5:32:126:0.040:2	./.	./.	0/1:115,5:30:120:0.042:2
chr19	40581420	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:197:0.020:2	./.	./.
chr19	40581437	rs8107210	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,87:32:191:0.455:2	./.	./.	./.
chr19	40581447	rs149588682	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,6:32:20:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	40698127	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,3:29:9:0.333:2	./.	0/1:5,4:29:9:0.444:2	./.	./.	./.	./.
chr19	40698128	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,3:28:9:0.333:2	./.	0/1:3,4:29:7:0.571:2	./.	./.	./.	./.
chr19	40698146	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,3:31:11:0.273:2	./.	0/1:3,4:31:7:0.571:2	./.	./.	./.	./.
chr19	40698527	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,4:32:73:0.055:2	./.	./.	./.	./.	./.	./.
chr19	40719076	rs1129156	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,16:29:34:0.471:2	0/1:7,6:28:13:0.462:2	0/1:0,2:29:2:1.00:2	0/1:13,13:28:26:0.500:2	0/1:0,28:28:28:1.00:2	0/1:0,21:28:21:1.00:2	0/1:1,34:28:35:0.971:2	0/1:19,12:27:31:0.387:2	0/1:15,24:29:39:0.615:2	0/1:0,23:28:23:1.00:2	0/1:0,28:29:28:1.00:2
chr19	40719497	rs34886198	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,10:30:22:0.455:2	0/1:3,4:30:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	40730639	rs199816045	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:88,6:22:94:0.064:2	./.	./.	0/1:109,18:12:127:0.142:2	0/1:129,30:8:159:0.189:2	0/1:117,22:15:139:0.158:2	0/1:146,20:10:166:0.120:2	0/1:135,24:9:159:0.151:2	./.	./.	./.
chr19	40732393	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.
chr19	40745994	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,37:32:65:0.569:2	./.	./.	./.	./.	./.
chr19	40748577	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,4:30:107:0.037:2	./.	./.	./.	./.	./.	./.
chr19	40761088	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:29:58:0.069:2
chr19	40828026	rs138317244	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,25:32:50:0.500:2	./.	./.
chr19	40842248	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:32:104:0.039:2
chr19	40883778	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:30:95:0.042:2	./.	./.	./.
chr19	40886742	rs56365273	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,19:31:36:0.528:2	0/1:12,7:31:19:0.368:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	40886993	rs11670988	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,29:32:66:0.439:2	./.	./.	./.
chr19	40889858	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:30:95:0.042:2	./.	./.	./.
chr19	40895487	rs75999496	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,8:15:55:0.145:2	./.	./.	./.	./.	./.	./.	./.
chr19	40900413	rs143289108	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,12:31:18:0.667:2
chr19	40900865	rs268674	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:32:25:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,26:32:26:1.00:2
chr19	40901011	rs3745202	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,38:30:87:0.437:2	0/1:36,43:29:80:0.544:2
chr19	40901496	rs268673	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,43:32:43:1.00:2	0/1:3,23:32:26:0.885:2	./.	./.	./.	./.	./.	./.	0/1:35,32:33:67:0.478:2	0/1:22,36:33:58:0.621:2	0/1:29,26:32:55:0.473:2
chr19	40901604	rs268672	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:3,26:31:29:0.897:2	0/1:0,21:29:21:1.00:2	./.	0/1:16,15:29:31:0.484:2	./.	./.	0/1:0,19:30:19:1.00:2	./.	0/1:21,21:30:42:0.500:2	0/1:20,13:27:33:0.394:2	0/1:1,31:30:32:0.969:2
chr19	40901614	rs268671	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:2,24:27:26:0.923:2	0/1:0,19:30:19:1.00:2	./.	0/1:16,13:30:29:0.448:2	./.	./.	0/1:0,17:27:17:1.00:2	./.	0/1:19,15:29:35:0.441:2	0/1:18,12:26:31:0.400:2	0/1:1,30:28:31:0.968:2
chr19	40901647	rs201389706	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,5:23:23:0.217:2	0/1:46,11:27:57:0.193:2	0/1:29,8:29:37:0.216:2	0/1:23,5:27:28:0.179:2	0/1:34,10:30:44:0.227:2	0/1:25,4:23:29:0.138:2	0/1:21,5:28:26:0.192:2	./.
chr19	40903788	rs4803335	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,12:31:31:0.387:2	0/1:8,16:28:24:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	40904602	rs744389	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,39:32:72:0.542:2	0/1:21,38:32:59:0.644:2
chr19	40928944	rs4150992	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:2,47:30:49:0.959:2	0/1:0,28:30:28:1.00:2	./.	0/1:60,33:30:93:0.355:2	./.	./.	./.	0/1:53,49:30:102:0.480:2	0/1:39,42:30:81:0.519:2	./.	0/1:40,29:31:69:0.420:2
chr19	40928968	rs4150991	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,18:31:43:0.419:2	0/1:16,13:31:29:0.448:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	40929363	rs268687	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,34:30:34:1.00:2	0/1:0,18:29:18:1.00:2	./.	0/1:1,49:30:50:0.980:2	0/1:34,24:31:58:0.414:2	./.	0/1:1,34:30:35:0.971:2	0/1:29,26:29:55:0.473:2	0/1:0,36:28:36:1.00:2	0/1:37,15:27:52:0.288:2	0/1:0,29:28:29:1.00:2
chr19	40947448	rs2887292	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,32:33:73:0.438:2	0/1:33,22:32:55:0.400:2	./.	./.	./.	0/1:40,27:33:67:0.403:2	0/1:33,35:33:68:0.515:2	0/1:53,37:33:90:0.411:2
chr19	40947751	rs35314597	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,12:31:26:0.462:2	0/1:15,10:32:25:0.400:2	./.	./.	./.	0/1:14,22:32:36:0.611:2	0/1:8,22:32:30:0.733:2	0/1:14,7:31:21:0.333:2
chr19	40964312	rs1061197	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:10,12:31:22:0.545:2	0/1:13,11:31:24:0.458:2	./.	0/1:40,28:30:68:0.412:2	./.	./.	./.	0/1:37,32:29:69:0.464:2	0/1:27,19:31:46:0.413:2	./.	0/1:23,28:31:51:0.549:2
chr19	40964340	rs45487299	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,52:33:97:0.536:2	./.	./.	./.
chr19	40964395	rs11547746	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,12:32:23:0.522:2	./.
chr19	40978640	rs73931308	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,15:30:31:0.484:2	./.	./.	0/1:0,43:29:43:1.00:2	./.	0/1:18,19:31:37:0.514:2	./.	./.
chr19	40978644	rs150447798	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,30:30:47:0.638:2	./.	./.	./.	./.
chr19	41008049	rs814526	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:30:4:1.00:2	0/1:29,23:30:52:0.442:2	./.	0/1:28,17:31:45:0.378:2	./.	./.	./.	./.	0/1:18,19:32:37:0.514:2
chr19	41009982	rs71358911	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,49:32:113:0.434:2	./.	0/1:67,94:32:161:0.584:2	./.	./.	./.	./.	./.
chr19	41012190	rs7258094	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:30:7:1.00:2	0/1:90,83:31:173:0.480:2	./.	0/1:100,97:30:197:0.492:2	./.	./.	./.	./.	./.
chr19	41025981	rs199521236	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,3:28:20:0.150:2
chr19	41038574	rs814501	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,18:32:47:0.383:2	0/1:14,7:31:21:0.333:2	0/1:1,8:30:9:0.889:2	0/1:0,47:30:47:1.00:2	./.	0/1:0,55:29:55:1.00:2	./.	0/1:34,44:30:78:0.564:2	./.	./.	0/1:23,22:31:45:0.489:2
chr19	41078000	rs145835537	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,10:33:23:0.435:2
chr19	41078220	rs1165841	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,29:33:62:0.468:2	0/1:24,21:32:45:0.467:2	0/1:0,15:33:15:1.00:2	0/1:0,68:32:68:1.00:2	0/1:61,4:32:65:0.062:2	0/1:0,73:32:73:1.00:2	0/1:34,27:33:61:0.443:2	0/1:42,32:32:74:0.432:2	0/1:0,70:34:70:1.00:2	0/1:30,26:32:56:0.464:2	0/1:36,35:33:71:0.493:2
chr19	41082868	rs16974365	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:33:3:1.00:2	0/1:2,4:33:6:0.667:2	./.	./.	./.
chr19	41086309	rs11555272	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,103:32:103:1.00:2	./.	./.	./.	./.	./.	./.
chr19	41096189	rs396118	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:31:3:1.00:2	0/1:0,4:30:4:1.00:2	./.	./.	0/1:5,5:29:10:0.500:2	./.	./.	0/1:5,7:31:12:0.583:2	./.	0/1:0,10:31:10:1.00:2	0/1:5,4:29:9:0.444:2
chr19	41111069	rs2303729	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,24:28:24:1.00:2	0/1:0,11:31:11:1.00:2	./.	./.	0/1:8,9:30:17:0.529:2	./.	0/1:4,4:28:8:0.500:2	0/1:9,8:30:17:0.471:2	./.	0/1:0,19:30:19:1.00:2	0/1:4,4:30:8:0.500:2
chr19	41114269	rs34545902	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,34:31:47:0.723:2
chr19	41117869	rs1131620	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,64:29:64:1.00:2	0/1:0,36:30:36:1.00:2	0/1:2,5:31:7:0.714:2	./.	0/1:66,56:29:123:0.459:2	./.	0/1:90,58:31:148:0.392:2	0/1:78,56:30:135:0.418:2	./.	0/1:52,31:30:83:0.373:2	0/1:24,50:29:74:0.676:2
chr19	41118056	rs1051303	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,26:30:26:1.00:2	0/1:0,15:32:15:1.00:2	./.	./.	0/1:22,24:31:46:0.522:2	./.	0/1:36,21:33:57:0.368:2	0/1:23,29:32:52:0.558:2	./.	0/1:19,14:32:33:0.424:2	0/1:15,7:33:22:0.318:2
chr19	41119829	rs2077407	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:1,85:32:86:0.988:2	0/1:0,38:31:38:1.00:2	./.	./.	./.	./.	./.	0/1:55,55:31:110:0.500:2	./.	./.	./.
chr19	41128309	rs10880	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,18:32:18:1.00:2	0/1:1,6:32:7:0.857:2	0/1:0,4:32:4:1.00:2	./.	./.	./.	0/1:17,12:30:29:0.414:2	0/1:17,23:32:40:0.575:2	./.	0/1:22,10:32:32:0.313:2	./.
chr19	41128868	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,30:30:53:0.566:2	0/1:16,19:29:35:0.543:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	41129842	rs7367	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,55:30:55:1.00:2	0/1:0,14:30:14:1.00:2	./.	./.	0/1:52,41:29:93:0.441:2	./.	0/1:49,43:29:92:0.467:2	0/1:46,57:30:103:0.553:2	./.	0/1:32,18:31:50:0.360:2	0/1:32,18:30:50:0.360:2
chr19	41173372	rs12975396	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:1,40:29:41:0.976:2	0/1:2,35:30:37:0.946:2	0/1:1,3:28:4:0.750:2	./.	./.	./.	./.	./.	./.	0/1:20,20:30:40:0.500:2	./.
chr19	41173397	rs149044373	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,36:32:68:0.529:2	./.	./.	./.	./.
chr19	41173880	rs2604901	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,12:28:12:1.00:2	0/1:0,15:31:15:1.00:2	./.	./.	0/1:4,7:30:11:0.636:2	./.	0/1:0,12:32:12:1.00:2	./.	0/1:0,5:32:5:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,6:31:6:1.00:2
chr19	41173886	rs62640392	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,3:31:14:0.214:2	./.	./.	./.	./.	./.	./.
chr19	41173898	rs79747129	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,3:31:11:0.273:2	0/1:2,3:33:5:0.600:2	./.	./.
chr19	41206060	rs36012476	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,19:32:40:0.475:2	0/1:14,9:32:23:0.391:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	41209477	rs11538385	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,31:31:68:0.456:2	0/1:52,38:31:90:0.422:2	0/1:0,56:32:56:1.00:2	0/1:45,38:32:83:0.458:2	0/1:0,65:32:65:1.00:2	0/1:34,27:33:61:0.443:2	0/1:32,37:32:69:0.536:2
chr19	41209689	rs4803357	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,42:32:71:0.592:2	./.	./.	./.	./.	./.	./.
chr19	41211056	rs3865452	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:30:7:0.429:2	0/1:37,26:30:63:0.413:2	0/1:61,47:29:109:0.435:2	0/1:40,52:30:92:0.565:2	./.	0/1:71,54:30:125:0.432:2	./.	./.	0/1:34,29:28:63:0.460:2
chr19	41220029	rs11538384	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,58:32:111:0.523:2	./.	./.	./.	./.	./.	./.
chr19	41220529	rs11673492	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:0,33:30:33:1.00:2	0/1:0,23:31:23:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:26,9:27:35:0.257:2	./.
chr19	41235120	rs10420685	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,24:29:58:0.414:2	./.	./.	./.	./.	./.	./.	./.
chr19	41251098	rs199729288	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,16:32:44:0.364:2	./.	./.	./.	./.	./.	./.	0/1:17,12:30:29:0.414:2
chr19	41255418	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,33:28:93:0.355:2	0/1:34,31:30:65:0.477:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	41255500	rs2254343	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,59:32:60:0.983:2	0/1:1,29:31:30:0.967:2	0/1:0,3:32:3:1.00:2	0/1:0,55:32:55:1.00:2	0/1:37,25:32:62:0.403:2	0/1:0,70:32:70:1.00:2	0/1:35,32:32:67:0.478:2	0/1:48,41:32:89:0.461:2	./.	0/1:31,33:33:64:0.516:2	0/1:0,63:32:63:1.00:2
chr19	41255603	rs2254338	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,26:31:60:0.433:2	./.	./.	./.	./.	./.	./.	0/1:50,42:31:92:0.457:2
chr19	41255705	rs77405258	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,38:32:93:0.409:2	./.	./.	./.	./.
chr19	41257396	rs2607418	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,15:31:31:0.484:2	./.	./.	./.	./.	./.	./.	0/1:12,18:31:30:0.600:2
chr19	41263403	rs2230694	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,75:33:155:0.487:2	./.	./.	./.	./.	./.	./.	0/1:63,86:32:149:0.577:2
chr19	41281700	rs2233156	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,49:32:100:0.490:2	./.	./.	./.	./.	./.	./.	./.
chr19	41289756	rs2287692	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,14:31:41:0.341:2	./.	./.	./.	./.	./.	./.	0/1:25,12:30:38:0.324:2
chr19	41307036	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,3:33:28:0.107:2	./.	./.	./.	./.
chr19	41307170	rs2545763	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,21:31:36:0.583:2	./.	./.	./.	./.	./.	./.	./.
chr19	41349786	rs145014075	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,49:30:190:0.258:2
chr19	41349874	rs143731390	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:87,77:28:164:0.470:2	./.	./.	./.	0/1:145,39:29:184:0.212:2	0/1:140,41:28:181:0.227:2	./.
chr19	41350594	rs2002977	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,16:32:37:0.432:2	0/1:81,70:31:151:0.464:2	./.	./.	./.	./.	./.	./.	0/1:0,147:32:147:1.00:2
chr19	41350630	rs56314118	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,44:32:86:0.512:2	./.	./.	./.	./.	./.	./.
chr19	41350648	rs28399461	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,31:30:70:0.443:2	0/1:80,68:31:148:0.459:2	./.	./.	./.	./.	./.
chr19	41350664	rs1809810	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,102:28:103:0.990:2	0/1:1,50:30:51:0.980:2	0/1:0,15:29:15:1.00:2	0/1:0,105:28:105:1.00:2	0/1:26,30:27:57:0.536:2	0/1:1,113:28:114:0.991:2	0/1:0,70:29:70:1.00:2	0/1:0,124:28:124:1.00:2	0/1:0,128:29:128:1.00:2	0/1:0,134:29:135:1.00:2	0/1:0,132:28:132:1.00:2
chr19	41351211	rs150586234	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,6:31:81:0.074:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	41351321	rs200267449	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,26:31:150:0.173:2	0/1:81,12:32:93:0.129:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	41352807	rs55805386	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:155,39:28:194:0.201:2	0/1:159,35:27:194:0.180:2	0/1:163,34:27:197:0.173:2	./.	0/1:121,68:27:189:0.360:2	0/1:164,31:29:195:0.159:2	0/1:174,18:29:192:0.094:2	0/1:148,45:27:193:0.233:2
chr19	41352817	rs140471703	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,5:32:190:0.026:2	./.	./.	./.
chr19	41352840	rs1809811	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,7:29:24:0.292:2	0/1:129,57:30:186:0.306:2	./.	./.	./.	./.	./.	./.	0/1:65,120:29:185:0.649:2
chr19	41352896	rs138978736	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:134,15:29:149:0.101:2	./.	./.	./.	0/1:154,9:28:165:0.055:2	./.	./.
chr19	41354533	rs1801272	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,16:31:37:0.432:2	0/1:6,8:32:14:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	41354606	rs4986892	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,4:32:16:0.250:2	0/1:43,23:32:66:0.348:2	./.	0/1:57,24:32:81:0.296:2	./.	0/1:65,33:31:98:0.337:2	0/1:52,8:33:60:0.133:2	0/1:52,13:32:65:0.200:2	0/1:24,12:31:36:0.333:2
chr19	41354661	rs79584535	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,4:34:14:0.286:2	0/1:38,10:33:48:0.208:2	./.	0/1:50,9:32:59:0.153:2	./.	0/1:54,17:31:71:0.239:2	0/1:41,3:32:44:0.068:2	0/1:37,7:31:44:0.159:2	./.
chr19	41355820	rs199702575	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:147,19:29:167:0.114:2	0/1:114,9:27:123:0.073:2	./.	0/1:177,14:28:191:0.073:2	./.	./.	./.	./.	./.	./.	./.
chr19	41355828	rs200582200	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:148,21:31:169:0.124:2	0/1:118,8:31:126:0.063:2	./.	0/1:173,16:32:189:0.085:2	./.	./.	./.	./.	./.	./.	./.
chr19	41355849	rs2302990	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:152,18:32:170:0.106:2	./.	0/1:145,32:33:177:0.181:2	./.	0/1:143,34:33:177:0.192:2	0/1:150,40:33:190:0.211:2	0/1:154,19:32:173:0.110:2	0/1:140,20:32:160:0.125:2
chr19	41356188	rs56283800	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,15:31:37:0.405:2	0/1:107,85:32:192:0.443:2	./.	./.	./.	./.	./.	./.	0/1:3,176:32:179:0.983:2
chr19	41356281	rs1137115	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,29:33:29:1.00:2	0/1:0,192:33:192:1.00:2	0/1:100,90:32:190:0.474:2	0/1:0,188:33:188:1.00:2	./.	0/1:0,187:33:187:1.00:2	0/1:2,180:33:183:0.989:2	0/1:0,158:33:158:1.00:2	0/1:0,179:33:179:1.00:2
chr19	41381647	rs12460590	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:161,20:33:181:0.110:2	0/1:165,19:32:184:0.103:2	0/1:49,15:31:64:0.234:2	0/1:160,31:33:191:0.162:2	0/1:3,72:31:75:0.960:2	0/1:176,16:30:192:0.083:2	./.	0/1:178,9:34:187:0.048:2	0/1:0,85:32:85:1.00:2	0/1:5,58:31:63:0.921:2	0/1:169,10:34:179:0.056:2
chr19	41381683	rs71358943	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,15:28:192:0.078:2
chr19	41381771	rs12462918	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,74:29:139:0.532:2	./.	./.	./.	0/1:116,34:29:150:0.227:2	0/1:111,37:29:149:0.250:2	./.
chr19	41382476	rs75152309	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,80:32:191:0.419:2	./.	0/1:90,89:32:179:0.497:2	./.	./.	./.	./.	0/1:100,66:31:166:0.398:2
chr19	41382511	rs141254433	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:177,4:35:181:0.022:2	./.	./.	./.	./.	./.	./.
chr19	41382560	rs150890087	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,44:29:114:0.386:2	./.	0/1:96,6:29:102:0.059:2	./.	./.	./.	./.	0/1:49,62:29:111:0.559:2
chr19	41383134	rs147847954	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,39:32:86:0.453:2	0/1:29,28:33:57:0.491:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	41383137	rs148915421	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,39:32:90:0.433:2	0/1:30,28:32:58:0.483:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	41383153	rs2261144	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:29:11:0.455:2	./.	./.	0/1:54,76:28:130:0.585:2	./.	0/1:7,151:28:158:0.956:2	0/1:68,85:29:153:0.556:2	./.	./.
chr19	41383215	rs2302986	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,67:30:122:0.549:2	./.	./.	./.	./.	./.	0/1:27,71:30:98:0.724:2	./.
chr19	41383217	rs2302987	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,48:32:120:0.400:2	0/1:2,41:32:43:0.953:2	0/1:98,36:31:134:0.269:2	./.	./.	0/1:89,35:33:124:0.282:2	0/1:71,23:31:94:0.245:2	0/1:101,35:32:136:0.257:2
chr19	41383799	rs3869579	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:34,23:31:57:0.404:2	0/1:120,75:32:195:0.385:2	./.	0/1:117,79:32:196:0.403:2	./.	0/1:5,183:32:189:0.973:2	0/1:102,91:33:193:0.472:2	0/1:99,92:32:191:0.482:2	0/1:99,84:32:185:0.459:2
chr19	41383849	rs117244518	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,68:33:172:0.395:2	./.	./.	./.	./.	./.	./.	./.
chr19	41384675	rs4079366	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,15:31:28:0.536:2	0/1:1,152:30:153:0.993:2	0/1:4,126:30:130:0.969:2	0/1:0,128:30:128:1.00:2	./.	0/1:1,183:31:184:0.995:2	0/1:0,157:32:157:1.00:2	0/1:0,138:31:138:1.00:2	0/1:0,141:30:141:1.00:2
chr19	41384702	rs117539170	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:119,50:29:169:0.296:2	0/1:6,159:30:165:0.964:2	0/1:103,44:29:147:0.299:2	./.	./.	0/1:120,70:31:190:0.368:2	0/1:99,84:30:183:0.459:2	0/1:117,42:29:159:0.264:2
chr19	41384781	rs112946838	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,12:32:114:0.105:2	./.	0/1:112,10:32:124:0.082:2	./.	./.	./.	./.	0/1:116,25:33:142:0.177:2
chr19	41386033	rs73032311	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,183:30:189:0.968:2	./.	./.	./.	0/1:102,84:31:186:0.452:2	0/1:59,93:31:152:0.612:2	./.
chr19	41386136	rs4142867	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,63:31:133:0.474:2	./.	0/1:65,56:32:121:0.463:2	./.	0/1:6,100:32:106:0.943:2	0/1:74,55:34:130:0.426:2	0/1:88,56:31:144:0.389:2	0/1:61,46:31:107:0.430:2
chr19	41386420	rs56081734	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,5:30:17:0.294:2	0/1:103,45:31:148:0.304:2	./.	0/1:65,45:32:110:0.409:2	./.	0/1:1,83:32:84:0.988:2	0/1:57,35:31:92:0.380:2	0/1:47,38:29:85:0.447:2	0/1:48,29:31:77:0.377:2
chr19	41386486	rs3815708	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,6:31:63:0.095:2	./.	0/1:38,4:30:42:0.095:2	./.	0/1:0,3:32:3:1.00:2	0/1:35,5:30:40:0.125:2	0/1:32,4:28:36:0.111:2	0/1:24,3:31:27:0.111:2
chr19	41386487	rs3815709	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,6:31:62:0.097:2	./.	0/1:41,4:31:45:0.089:2	./.	0/1:0,3:32:3:1.00:2	0/1:37,5:29:42:0.119:2	0/1:32,4:31:36:0.111:2	./.
chr19	41386494	rs3815710	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,5:24:52:0.096:2	./.	./.	./.	./.	./.	./.	./.
chr19	41387620	rs10425150	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,4:32:17:0.235:2	0/1:104,30:31:134:0.224:2	./.	0/1:90,20:30:110:0.182:2	./.	0/1:12,56:31:68:0.824:2	0/1:82,22:32:104:0.212:2	0/1:78,12:32:90:0.133:2	0/1:81,21:32:102:0.206:2
chr19	41387647	rs10425169	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,13:30:86:0.151:2	./.	0/1:65,10:30:75:0.133:2	./.	0/1:0,19:30:19:1.00:2	0/1:65,7:24:73:0.097:2	0/1:51,6:30:57:0.105:2	0/1:56,16:29:72:0.222:2
chr19	41387656	rs10425176	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,14:30:85:0.167:2	./.	0/1:57,11:29:68:0.162:2	./.	0/1:0,18:31:18:1.00:2	0/1:51,6:30:58:0.105:2	./.	0/1:56,11:31:67:0.164:2
chr19	41497274	rs8192709	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,18:29:39:0.462:2	./.	./.	./.	./.	./.	./.
chr19	41509927	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,40:32:105:0.381:2	./.	./.	./.	./.	./.	./.
chr19	41509950	rs2279341	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,49:33:118:0.415:2	./.	./.	./.	./.	./.	./.
chr19	41512841	rs3745274	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,41:31:108:0.380:2	0/1:41,53:31:94:0.564:2	0/1:41,40:31:81:0.494:2	./.	./.	./.	./.	./.
chr19	41512872	rs58871670	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,52:32:118:0.441:2	0/1:24,35:32:59:0.593:2	./.	./.	./.	0/1:46,48:31:94:0.511:2	./.	./.	./.	./.	./.
chr19	41515263	rs2279343	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,5:29:22:0.227:2	0/1:75,39:32:114:0.342:2	0/1:66,33:31:99:0.333:2	0/1:91,32:33:123:0.260:2	./.	0/1:166,7:32:173:0.040:2	./.	0/1:146,5:33:152:0.033:2	./.
chr19	41522715	rs3211371	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,15:32:34:0.441:2	0/1:16,15:32:31:0.484:2	./.
chr19	41594891	rs202058359	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,6:31:145:0.041:2	0/1:74,6:31:80:0.075:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	41594916	rs138627841	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,6:33:149:0.040:2	0/1:71,7:31:78:0.090:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	41594954	rs72552266	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:146,5:29:151:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr19	41595958	rs75703079	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,3:30:17:0.176:2	./.	./.	./.	0/1:26,7:27:33:0.212:2	./.	./.	./.
chr19	41595959	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,4:27:33:0.121:2	./.	./.	./.
chr19	41596322	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:30:198:0.025:2	./.	./.	./.
chr19	41596395	rs151080412	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:31:93:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	41597726	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,5:29:190:0.026:2
chr19	41601771	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:177,10:32:187:0.053:2	./.	./.	0/1:183,7:34:190:0.037:2	./.	./.	./.	./.
chr19	41601774	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:177,10:30:187:0.053:2	./.	./.	0/1:183,7:28:190:0.037:2	./.	./.	./.	./.
chr19	41622189	rs305968	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:32,34:33:66:0.515:2	0/1:23,15:32:38:0.395:2	./.	./.	0/1:38,34:32:72:0.472:2	0/1:28,50:32:78:0.641:2	./.	0/1:5,84:32:89:0.944:2	0/1:25,45:34:70:0.643:2	0/1:26,30:32:56:0.536:2	./.
chr19	41622205	rs58285195	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:36,28:32:64:0.438:2	0/1:23,21:32:44:0.477:2	./.	./.	./.	./.	./.	0/1:58,47:32:105:0.448:2	./.	./.	./.
chr19	41627868	rs80319612	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:83,31:32:115:0.272:2	0/1:34,14:32:48:0.292:2	./.	./.	0/1:121,38:31:159:0.239:2	0/1:62,40:31:102:0.392:2	./.	0/1:2,111:31:113:0.982:2	0/1:75,37:32:112:0.330:2	0/1:61,46:32:107:0.430:2	./.
chr19	41628014	rs117958555	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,4:32:30:0.133:2	0/1:22,7:30:29:0.241:2	./.	0/1:16,9:33:25:0.360:2	./.	./.	./.
chr19	41631415	rs137939255	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:141,36:30:178:0.203:2	0/1:149,32:31:181:0.177:2	./.	0/1:133,47:31:180:0.261:2	0/1:156,35:31:191:0.183:2	0/1:142,46:31:189:0.245:2	./.
chr19	41631417	rs144315434	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,9:33:39:0.231:2	./.	./.	./.	0/1:148,37:34:185:0.200:2	./.	./.	./.	./.
chr19	41633809	rs139951793	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:99,5:31:104:0.048:2	0/1:62,6:32:68:0.088:2	0/1:26,5:32:31:0.161:2	0/1:137,14:31:151:0.093:2	0/1:133,31:31:164:0.189:2	0/1:135,14:31:149:0.094:2	./.	0/1:143,21:31:164:0.128:2	0/1:113,8:31:121:0.066:2	0/1:100,9:29:109:0.083:2	./.
chr19	41633864	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:177,16:31:193:0.083:2	./.	./.	./.	./.	./.	./.	./.
chr19	41633980	rs7246981	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,34:31:51:0.667:2	./.	./.	./.	./.	./.
chr19	41699301	rs181317441	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,5:30:22:0.227:2
chr19	41700493	rs338599	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,58:33:129:0.450:2	0/1:41,46:32:87:0.529:2	0/1:0,11:31:11:1.00:2	0/1:0,177:33:177:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,148:32:148:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,163:32:163:1.00:2	0/1:0,147:33:147:1.00:2	0/1:0,116:32:116:1.00:2	0/1:0,101:32:101:1.00:2
chr19	41712275	rs34971233	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,29:32:60:0.483:2	./.
chr19	41743861	rs7249222	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:32:50:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,51:31:51:1.00:2	0/1:1,60:32:61:0.984:2	0/1:0,66:32:66:1.00:2	0/1:0,51:33:51:1.00:2	0/1:0,41:33:41:1.00:2	0/1:0,48:32:48:1.00:2
chr19	41809983	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,4:29:24:0.167:2	./.	./.	./.	./.	./.	./.
chr19	41809995	rs1056854	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:26:7:0.429:2	./.	./.	./.
chr19	41811730	rs12745	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,6:30:6:1.00:2	0/1:0,4:30:4:1.00:2	./.	0/1:0,5:30:5:1.00:2	0/1:0,13:28:13:1.00:2	0/1:0,9:27:9:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,7:28:7:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,10:28:10:1.00:2	0/1:0,2:33:2:1.00:2
chr19	41847860	rs1800472	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,98:29:184:0.533:2	./.	./.	./.	./.	./.
chr19	41858876	rs1800471	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,7:30:16:0.438:2	./.	./.	./.	./.
chr19	41858921	rs1800470	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,2:33:3:0.667:2	0/1:0,4:33:4:1.00:2	./.	0/1:1,6:32:7:0.857:2	0/1:0,2:32:2:1.00:2	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.
chr19	41869392	rs2241714	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,24:33:57:0.421:2	0/1:24,14:32:38:0.368:2	0/1:0,14:32:14:1.00:2	0/1:46,41:33:87:0.471:2	0/1:44,42:33:86:0.488:2	./.	0/1:55,35:33:91:0.389:2	0/1:0,73:32:73:1.00:2	0/1:46,47:33:93:0.505:2	0/1:61,28:32:89:0.315:2	0/1:0,95:33:95:1.00:2
chr19	41888687	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:32:133:0.030:2	./.
chr19	41889748	rs12602	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:31:39:1.00:2	0/1:2,24:29:26:0.923:2	0/1:0,11:30:11:1.00:2	0/1:40,29:30:69:0.420:2	./.	0/1:38,38:30:76:0.500:2	./.	0/1:0,38:29:38:1.00:2	0/1:30,17:31:47:0.362:2	0/1:27,17:28:44:0.386:2	0/1:1,26:30:27:0.963:2
chr19	41903220	rs10853751	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:29:31:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,5:30:5:1.00:2	0/1:37,25:29:62:0.403:2	./.	0/1:41,44:30:85:0.518:2	./.	0/1:1,97:30:98:0.990:2	0/1:25,20:31:45:0.444:2	0/1:38,37:30:75:0.493:2	0/1:0,37:31:37:1.00:2
chr19	41903766	rs34541442	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,25:33:56:0.446:2	0/1:28,7:31:35:0.200:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	41916549	rs11549936	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,24:31:25:0.960:2	0/1:1,13:31:14:0.929:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	41916721	rs148571328	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,18:31:27:0.667:2
chr19	41928130	rs146932786	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,58:30:106:0.547:2	./.	./.	./.	./.
chr19	41928652	rs284652	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,34:30:34:1.00:2	0/1:0,11:31:11:1.00:2	./.	0/1:16,27:30:43:0.628:2	./.	0/1:19,12:29:31:0.387:2	./.	0/1:0,46:29:46:1.00:2	0/1:13,18:30:31:0.581:2	0/1:15,14:30:29:0.483:2	0/1:0,32:30:32:1.00:2
chr19	41930396	rs4674	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:33:33:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,4:33:4:1.00:2	0/1:16,22:32:38:0.579:2	./.	0/1:13,21:32:34:0.618:2	./.	0/1:0,47:32:47:1.00:2	0/1:31,26:33:57:0.456:2	0/1:26,26:33:53:0.500:2	0/1:0,43:31:43:1.00:2
chr19	41932063	rs45563938	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,22:30:23:1.00:2	0/1:0,12:29:12:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	41932084	rs284660	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,21:31:21:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,4:31:4:1.00:2	0/1:29,15:30:44:0.341:2	./.	0/1:34,20:29:55:0.370:2	./.	0/1:3,49:30:52:0.942:2	0/1:23,16:32:39:0.410:2	0/1:16,14:31:30:0.467:2	0/1:0,47:31:47:1.00:2
chr19	41932120	rs284661	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,16:29:16:1.00:2	0/1:0,13:30:13:1.00:2	./.	0/1:24,13:28:37:0.351:2	./.	0/1:25,18:29:43:0.419:2	./.	0/1:2,42:29:44:0.955:2	0/1:13,15:29:28:0.536:2	0/1:6,14:30:20:0.700:2	0/1:0,32:31:32:1.00:2
chr19	41932275	rs284662	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:28:19:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,4:32:4:1.00:2	0/1:20,20:28:40:0.500:2	./.	0/1:22,16:28:38:0.421:2	./.	0/1:0,70:28:70:1.00:2	0/1:33,13:30:46:0.283:2	0/1:12,29:29:41:0.707:2	0/1:0,32:28:32:1.00:2
chr19	41932612	rs284663	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:32:19:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,6:30:6:1.00:2	0/1:22,10:31:32:0.313:2	./.	0/1:23,11:30:34:0.324:2	./.	0/1:0,30:31:30:1.00:2	0/1:24,16:32:40:0.400:2	0/1:14,19:31:33:0.576:2	0/1:0,18:32:18:1.00:2
chr19	41939297	rs1043413	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,7:33:21:0.333:2	0/1:0,29:31:29:1.00:2	0/1:4,13:33:17:0.765:2	0/1:0,21:31:21:1.00:2	./.	0/1:14,15:33:29:0.517:2	0/1:6,10:33:16:0.625:2	./.
chr19	41944237	rs2231940	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,63:33:162:0.389:2	0/1:1,112:32:113:0.991:2	0/1:79,70:33:149:0.470:2	0/1:0,119:33:119:1.00:2	./.	0/1:85,77:33:162:0.475:2	0/1:57,45:33:102:0.441:2	./.
chr19	41945837	rs13346603	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,9:29:59:0.153:2	0/1:0,30:30:30:1.00:2	0/1:22,30:30:52:0.577:2	0/1:0,25:30:25:1.00:2	./.	0/1:31,15:31:46:0.326:2	0/1:32,12:28:44:0.273:2	./.
chr19	41949978	rs150607510	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,9:27:21:0.429:2	./.	./.	./.	./.
chr19	42083673	rs7247842	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,42:33:79:0.532:2	./.
chr19	42083820	rs78133615	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,25:32:54:0.463:2	./.
chr19	42083849	rs714106	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,34:31:35:0.971:2	0/1:0,16:31:16:1.00:2	0/1:1,3:31:4:0.750:2	0/1:26,32:31:58:0.552:2	0/1:23,19:30:42:0.452:2	0/1:47,24:30:71:0.338:2	0/1:1,37:30:38:0.974:2	0/1:0,30:31:30:1.00:2	0/1:2,55:32:57:0.965:2	0/1:24,22:30:46:0.478:2	0/1:0,68:31:68:1.00:2
chr19	42085873	rs2302188	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:32:69:1.00:2	0/1:0,38:32:38:1.00:2	0/1:4,3:33:7:0.429:2	0/1:45,51:32:96:0.531:2	0/1:42,39:31:81:0.481:2	0/1:42,36:32:78:0.462:2	0/1:1,70:31:71:0.986:2	0/1:0,103:32:103:1.00:2	0/1:1,86:33:87:0.989:2	0/1:29,30:32:59:0.508:2	0/1:0,96:32:96:1.00:2
chr19	42126089	rs3745932	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,49:29:86:0.570:2	./.
chr19	42132193	rs3848568	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	42132273	rs1041992	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,8:32:25:0.320:2	./.
chr19	42132314	rs1126454	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,13:31:36:0.361:2	0/1:16,25:29:41:0.610:2	./.	0/1:22,16:29:38:0.421:2	./.	0/1:13,10:32:23:0.435:2	0/1:0,41:29:41:1.00:2
chr19	42187716	rs16975478	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:30:10:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	42187738	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,4:32:62:0.065:2	./.	./.	./.	./.	./.	./.
chr19	42190859	rs8102488	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,184:31:184:1.00:2	0/1:5,158:31:163:0.969:2	0/1:16,20:30:36:0.556:2	./.	0/1:0,188:31:188:1.00:2	./.	0/1:109,85:32:194:0.438:2	0/1:1,176:31:177:0.994:2	0/1:90,98:32:188:0.521:2	0/1:98,88:31:186:0.473:2	0/1:1,178:32:179:0.994:2
chr19	42190871	rs113395236	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,24:30:41:0.585:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	42213725	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:32:176:0.023:2
chr19	42213744	rs10402825	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:31:13:0.308:2	./.	0/1:68,58:30:128:0.460:2	0/1:75,101:30:178:0.574:2	./.	./.	./.	./.	0/1:1,162:31:164:0.994:2
chr19	42213772	rs12971352	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,4:32:16:0.250:2	./.	0/1:61,60:31:121:0.496:2	0/1:77,89:32:166:0.536:2	./.	0/1:80,93:31:174:0.538:2	./.	./.	0/1:2,148:32:150:0.987:2
chr19	42213782	rs28683503	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,3:32:18:0.167:2	./.	0/1:60,57:30:117:0.487:2	0/1:76,84:32:160:0.525:2	./.	0/1:84,84:32:168:0.500:2	./.	./.	0/1:4,136:33:141:0.971:2
chr19	42213868	rs34155934	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,3:28:16:0.188:2	./.	0/1:57,41:29:98:0.418:2	0/1:82,81:29:163:0.497:2	./.	0/1:90,83:29:173:0.480:2	./.	./.	0/1:3,135:29:138:0.978:2
chr19	42213872	rs35091611	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,4:32:17:0.235:2	./.	0/1:58,41:31:99:0.414:2	0/1:84,82:32:166:0.494:2	./.	0/1:89,83:31:172:0.483:2	./.	./.	0/1:3,134:32:137:0.978:2
chr19	42218930	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,5:30:87:0.057:2	./.	./.	./.	./.	./.	./.
chr19	42218985	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:30:105:0.038:2
chr19	42219712	rs182078144	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,10:33:27:0.370:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	42221434	rs10407503	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,41:30:102:0.402:2	./.	./.	./.	./.	./.
chr19	42221456	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.	./.	./.	./.	./.
chr19	42221607	rs7249230	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,102:30:102:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,13:31:13:1.00:2	./.	0/1:1,117:29:118:0.992:2	0/1:78,74:30:152:0.487:2	0/1:76,54:30:130:0.415:2	0/1:1,153:30:154:0.994:2	0/1:68,68:32:136:0.500:2	0/1:58,35:31:93:0.376:2	0/1:0,116:30:116:1.00:2
chr19	42223935	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,4:30:86:0.047:2	./.	./.	./.	./.	./.	./.	./.
chr19	42225060	rs10423171	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,89:32:187:0.476:2	./.	./.	./.	./.	./.
chr19	42260569	rs1805223	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:32:14:0.429:2	./.	./.	./.	0/1:68,50:32:118:0.424:2	./.	./.	./.	./.
chr19	42260672	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,5:30:189:0.026:2	./.	./.	./.
chr19	42260676	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,5:31:192:0.026:2	./.	./.	./.
chr19	42260691	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:161,6:31:167:0.036:2	0/1:153,7:34:160:0.044:2	./.	0/1:189,7:33:196:0.036:2	./.	./.	0/1:171,10:30:182:0.055:2
chr19	42260742	rs141329594	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:157,8:30:165:0.048:2	0/1:172,11:29:183:0.060:2	./.	./.	./.	./.	0/1:172,14:29:187:0.075:2
chr19	42265406	rs144169216	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:32:83:0.049:2	./.	./.	./.	./.
chr19	42265889	rs11548735	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,48:30:48:1.00:2	0/1:1,24:32:25:0.960:2	0/1:4,4:30:8:0.500:2	./.	0/1:0,30:30:30:1.00:2	0/1:21,23:31:44:0.523:2	./.	0/1:0,34:30:34:1.00:2	./.	./.	0/1:34,22:31:56:0.393:2
chr19	42265990	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:34:80:0.050:2	./.	./.	./.	./.
chr19	42312933	rs3752172	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:31:15:0.600:2	./.	./.	./.	./.	./.	0/1:74,58:31:132:0.439:2	0/1:49,62:29:111:0.559:2	./.
chr19	42314416	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:32:82:0.049:2	./.
chr19	42315281	rs899662	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,30:32:30:1.00:2	0/1:0,20:32:20:1.00:2	0/1:1,2:31:3:0.667:2	./.	0/1:0,39:31:39:1.00:2	0/1:19,11:31:30:0.367:2	./.	0/1:2,45:31:47:0.957:2	./.	./.	0/1:21,22:32:43:0.512:2
chr19	42341407	rs35476281	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,26:32:69:0.377:2	0/1:32,26:31:58:0.448:2	./.
chr19	42342166	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:32:95:0.042:2	./.	./.
chr19	42342319	rs2290695	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,32:31:32:1.00:2	0/1:2,14:30:16:0.875:2	./.	0/1:11,17:31:28:0.607:2	0/1:0,21:30:21:1.00:2	0/1:15,15:32:30:0.500:2	0/1:16,15:31:32:0.484:2	0/1:0,44:31:44:1.00:2	./.	./.	0/1:6,7:33:13:0.538:2
chr19	42354629	rs2305809	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,21:32:22:0.955:2	0/1:0,11:33:11:1.00:2	./.	0/1:14,7:34:21:0.333:2	0/1:0,27:31:27:1.00:2	0/1:13,11:31:24:0.458:2	0/1:9,18:33:27:0.667:2	0/1:0,26:30:26:1.00:2	./.	./.	0/1:8,13:32:21:0.619:2
chr19	42392130	rs28396197	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.	./.	0/1:24,20:33:44:0.455:2	./.	./.	./.	./.	./.
chr19	42392204	rs41307029	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	42392310	rs2288509	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,14:31:33:0.424:2	./.	./.	./.	./.	./.
chr19	42400458	rs200492200	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,13:30:29:0.448:2	./.	./.	./.	./.	./.
chr19	42400528	rs199751095	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,7:30:20:0.350:2	./.	./.	./.	./.
chr19	42463447	rs735571	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,76:30:78:0.974:2	0/1:0,36:30:36:1.00:2	./.	./.	0/1:0,173:31:173:1.00:2	0/1:63,80:30:143:0.559:2	0/1:101,78:31:179:0.436:2	0/1:8,171:31:179:0.955:2	./.	./.	0/1:0,88:31:88:1.00:2
chr19	42471050	rs919390	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,25:31:25:1.00:2	0/1:0,15:30:15:1.00:2	./.	./.	0/1:0,35:30:35:1.00:2	0/1:9,13:31:22:0.591:2	0/1:16,18:30:34:0.529:2	0/1:0,43:30:43:1.00:2	./.	./.	0/1:0,21:30:21:1.00:2
chr19	42473665	rs35272495	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:33:10:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	42474639	rs61733017	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,25:32:37:0.676:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	42479877	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,5:28:117:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr19	42489516	rs2217342	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:29:69:1.00:2	0/1:0,44:29:44:1.00:2	0/1:13,5:30:18:0.278:2	0/1:0,127:30:127:1.00:2	0/1:0,142:29:142:1.00:2	0/1:61,72:30:134:0.541:2	0/1:0,134:30:134:1.00:2	0/1:0,139:29:140:1.00:2	0/1:0,111:30:112:1.00:2	0/1:0,106:29:106:1.00:2	0/1:0,75:29:75:1.00:2
chr19	42490271	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,4:33:86:0.047:2	./.	./.	./.	./.	./.	./.
chr19	42490292	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,4:30:112:0.036:2	./.	./.	./.	./.	./.	./.
chr19	42507813	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:33:65:0.062:2	./.	./.	./.	./.
chr19	42596244	rs367613289	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,27:25:50:0.540:2	./.	0/1:7,3:27:10:0.300:2	0/1:62,46:26:108:0.426:2	0/1:71,58:25:129:0.450:2	0/1:61,50:26:111:0.450:2	0/1:74,63:23:137:0.460:2	0/1:67,38:25:105:0.362:2	0/1:52,25:25:77:0.325:2	0/1:43,33:26:76:0.434:2	0/1:40,27:27:67:0.403:2
chr19	42703833	rs2303652	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:27:9:0.556:2	./.	./.	0/1:24,29:30:53:0.547:2	0/1:32,29:30:61:0.475:2	./.	./.	./.	0/1:15,22:31:37:0.595:2
chr19	42703950	rs149135613	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,33:31:74:0.446:2	./.	./.	./.	./.
chr19	42728836	rs3810151	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:33:9:0.333:2	./.	./.	0/1:35,40:32:75:0.533:2	0/1:62,43:32:106:0.410:2	./.	./.	./.	./.
chr19	42730217	rs111722832	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:31:7:0.571:2
chr19	42730840	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,51:32:113:0.451:2	./.	./.	./.	./.	./.
chr19	42736267	rs851609	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,145:33:145:1.00:2	0/1:0,87:33:87:1.00:2	0/1:1,22:33:23:0.957:2	0/1:0,182:32:182:1.00:2	0/1:0,182:32:182:1.00:2	0/1:0,182:32:182:1.00:2	0/1:0,170:33:170:1.00:2	0/1:0,165:33:165:1.00:2	0/1:2,165:34:167:0.988:2	0/1:0,167:32:167:1.00:2	0/1:0,178:32:178:1.00:2
chr19	42753034	rs35493131	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:31:7:0.429:2
chr19	42753283	rs61735151	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,35:29:82:0.427:2	./.	./.	./.	./.
chr19	42753604	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:24:11:0.364:2	./.
chr19	42753649	rs11557114	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,5:31:17:0.294:2	./.	./.	./.	./.
chr19	42795178	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,6:19:50:0.120:2	./.	./.	./.	./.	./.	./.	./.
chr19	42795188	rs199808446	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,7:17:55:0.127:2	./.	./.	./.	./.	./.	./.
chr19	42795554	rs10410185	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,35:31:73:0.479:2	./.	./.	0/1:41,28:30:69:0.406:2	./.	./.	./.	./.
chr19	42799049	rs1052023	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,9:31:9:1.00:2	0/1:0,6:31:6:1.00:2	./.	0/1:4,6:32:10:0.600:2	0/1:0,12:32:12:1.00:2	./.	./.	0/1:0,10:31:10:1.00:2	./.	0/1:0,5:29:5:1.00:2	./.
chr19	42806180	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:35:59:0.068:2	./.	./.
chr19	42814710	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,15:28:30:0.517:2	./.	./.	./.	./.	./.
chr19	42853782	rs28621009	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,26:30:52:0.500:2	./.	./.	0/1:42,45:30:87:0.517:2	./.	./.	./.	0/1:23,17:31:40:0.425:2
chr19	42855882	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,14:16:151:0.093:2	./.	./.	./.	0/1:74,8:16:82:0.098:2
chr19	42857179	rs149155949	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,22:30:33:0.667:2	./.	./.	0/1:18,22:28:40:0.550:2	./.	./.	./.	./.
chr19	42858793	rs61995685	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,51:30:115:0.443:2	./.	./.	0/1:75,52:28:127:0.409:2	./.	./.	./.	./.
chr19	42860282	rs138473998	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	42863035	rs1206038	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,66:32:161:0.410:2	./.	./.	0/1:79,72:33:151:0.477:2	./.	./.	./.	./.
chr19	42867205	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,16:12:87:0.184:2	./.	./.	0/1:48,5:27:53:0.094:2
chr19	42880565	rs141224456	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:31:10:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr19	42893091	rs139046031	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,45:31:93:0.484:2	./.	./.	./.	./.	./.	./.	./.
chr19	42914665	rs201972445	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,7:14:27:0.259:2	./.	./.	./.	./.	./.	./.	./.
chr19	43013363	rs11666350	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,68:32:138:0.493:2	0/1:78,51:31:129:0.395:2	./.	0/1:81,73:32:154:0.474:2	./.	./.	./.	./.
chr19	43025485	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,18:11:118:0.153:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	43031209	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:34:194:0.021:2
chr19	43031212	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,6:27:194:0.031:2	./.	./.	./.	./.	./.
chr19	43031248	rs8111468	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:188,5:29:193:0.026:2	./.	./.	./.	./.	./.	0/1:100,88:29:188:0.468:2
chr19	43031267	rs77501817	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,19:30:46:0.413:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	43031318	rs199627333	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,6:31:190:0.032:2	./.	./.	0/1:176,9:28:185:0.049:2
chr19	43031329	rs143477834	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:187,5:32:192:0.026:2	0/1:183,5:30:188:0.027:2	./.	0/1:185,6:32:191:0.031:2	./.	./.	0/1:172,11:29:183:0.060:2
chr19	43031334	rs142053263	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:183,8:28:191:0.042:2	0/1:182,10:26:192:0.052:2	./.	0/1:182,7:30:189:0.037:2	./.	./.	0/1:168,17:30:185:0.092:2
chr19	43031369	rs8110904	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,61:31:181:0.341:2
chr19	43031407	rs79326931	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:177,13:30:190:0.068:2	0/1:172,21:29:193:0.109:2	./.	0/1:178,16:31:194:0.082:2	./.	./.	0/1:156,37:30:193:0.192:2
chr19	43031434	rs140316654	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,7:31:39:0.179:2	./.	0/1:187,7:32:194:0.036:2	0/1:177,18:29:195:0.092:2	./.	0/1:181,10:31:191:0.052:2	./.	./.	0/1:162,24:32:186:0.129:2
chr19	43031458	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,3:32:28:0.107:2	./.	./.	./.	./.	./.	./.	./.	0/1:141,5:30:146:0.034:2
chr19	43031514	rs8111171	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,65:32:138:0.471:2
chr19	43087484	rs1126458	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,65:32:143:0.455:2	0/1:66,54:32:120:0.450:2	./.	0/1:56,56:33:112:0.500:2	./.	./.	./.	./.
chr19	43233304	rs78863189	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,9:28:15:0.600:2	./.	0/1:10,12:32:22:0.545:2	./.	0/1:38,23:32:61:0.377:2	./.	./.
chr19	43233397	rs141810038	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,16:32:55:0.291:2	./.	./.	0/1:50,68:32:118:0.576:2
chr19	43242957	rs200117711	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,63:32:160:0.394:2	./.	./.
chr19	43243217	rs12185496	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:85,32:27:117:0.274:2	0/1:48,22:29:70:0.314:2	0/1:0,12:29:12:1.00:2	./.	0/1:1,49:29:50:0.980:2	0/1:90,30:29:122:0.250:2	0/1:83,19:28:102:0.186:2	0/1:6,52:29:59:0.897:2	0/1:0,60:29:60:1.00:2	./.	0/1:1,48:28:49:0.980:2
chr19	43243218	rs12185497	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:86,32:31:118:0.271:2	0/1:44,21:31:66:0.323:2	0/1:0,12:33:12:1.00:2	./.	0/1:0,50:32:50:1.00:2	0/1:89,31:32:120:0.258:2	0/1:80,19:32:99:0.192:2	0/1:3,55:32:58:0.948:2	0/1:0,60:32:60:1.00:2	./.	0/1:0,49:30:49:1.00:2
chr19	43243238	rs11559136	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:76,22:32:98:0.224:2	0/1:38,13:33:51:0.255:2	0/1:0,7:33:7:1.00:2	./.	0/1:0,18:30:18:1.00:2	0/1:75,19:32:94:0.202:2	0/1:68,10:29:78:0.128:2	0/1:2,38:31:40:0.950:2	0/1:0,33:31:33:1.00:2	./.	0/1:0,37:32:37:1.00:2
chr19	43258494	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,5:31:81:0.062:2	./.
chr19	43258619	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:33:73:0.055:2	./.	./.	./.	./.	./.
chr19	43259184	rs11879884	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,9:32:22:0.429:2	./.	0/1:29,18:33:47:0.383:2	./.	0/1:42,14:34:56:0.250:2	./.	./.
chr19	43259265	rs113087470	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,4:32:43:0.093:2	./.	./.	0/1:27,4:31:31:0.129:2	./.	./.	./.	./.
chr19	43259266	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,3:32:35:0.086:2	./.	./.	0/1:31,5:33:36:0.139:2
chr19	43259310	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:32:48:0.083:2
chr19	43268069	rs7255164	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,96:32:193:0.500:2	./.	0/1:117,78:32:195:0.400:2	./.	0/1:110,84:33:194:0.433:2	./.	./.
chr19	43268216	rs7256456	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,30:31:65:0.462:2	./.	0/1:40,44:32:84:0.524:2	./.	0/1:80,69:33:149:0.463:2	./.	./.
chr19	43268235	rs75257969	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,24:32:55:0.436:2	./.	0/1:33,36:32:69:0.522:2	./.	0/1:73,62:33:135:0.459:2	./.	./.
chr19	43268252	rs7255419	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.	./.	./.	./.
chr19	43372386	rs1064491	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	0/1:41,48:32:89:0.539:2	./.	./.	./.	./.	./.
chr19	43382368	rs707745	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:100,55:30:155:0.355:2	0/1:45,33:31:78:0.423:2	0/1:0,7:32:7:1.00:2	./.	0/1:4,24:32:28:0.857:2	0/1:96,48:31:144:0.333:2	./.	./.	./.	./.	./.
chr19	43382374	rs707744	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:97,58:33:156:0.374:2	0/1:43,35:32:78:0.449:2	0/1:0,5:32:5:1.00:2	./.	0/1:4,26:32:30:0.867:2	0/1:98,48:32:146:0.329:2	./.	./.	./.	./.	./.
chr19	43407828	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,5:32:104:0.048:2	./.	./.	./.	./.	./.
chr19	43411230	rs74994349	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,28:31:78:0.359:2	./.	./.	./.
chr19	43411738	rs149382921	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,7:30:10:0.700:2	./.	./.
chr19	43411742	rs199858569	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,7:32:11:0.636:2	./.	./.
chr19	43411761	rs144117726	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,11:32:16:0.688:2	./.	./.
chr19	43411834	rs150108851	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:33:61:0.066:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	43420368	rs73553510	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,5:30:153:0.033:2	./.	./.
chr19	43420451	rs3198831	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:95,100:33:195:0.513:2	0/1:71,60:32:131:0.458:2	0/1:1,10:33:11:0.909:2	./.	0/1:4,78:32:82:0.951:2	0/1:108,66:32:174:0.379:2	./.	./.	./.	./.	./.
chr19	43420517	rs140507212	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:32:180:0.022:2	./.	./.	./.	./.	./.
chr19	43430837	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,6:32:161:0.037:2	./.
chr19	43433805	rs1065178	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:35,52:33:87:0.598:2	0/1:26,14:32:40:0.350:2	0/1:0,10:33:10:1.00:2	./.	0/1:1,40:32:41:0.976:2	0/1:42,60:32:102:0.588:2	./.	./.	./.	./.	./.
chr19	43439694	rs113247044	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:59,59:29:118:0.500:2	0/1:22,31:28:53:0.585:2	./.	./.	0/1:0,18:30:18:1.00:2	./.	./.	./.	./.	./.	./.
chr19	43439739	rs58684857	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:59,56:32:115:0.487:2	0/1:21,29:32:50:0.580:2	./.	./.	0/1:0,22:31:22:1.00:2	./.	./.	./.	./.	./.	./.
chr19	43439793	rs7245978	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,113:32:114:0.991:2	0/1:0,63:32:63:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,111:31:111:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,104:31:104:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,96:31:96:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,111:31:111:1.00:2	0/1:0,141:31:141:1.00:2
chr19	43439848	rs113195821	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:85,55:32:140:0.393:2	0/1:45,48:33:93:0.516:2	./.	./.	0/1:7,36:33:43:0.837:2	./.	./.	./.	./.	./.	./.
chr19	43439857	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,3:32:46:0.065:2	./.	./.	./.	./.	./.	./.
chr19	43439887	.	T	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,3:34:50:0.060:2	0/1:158,4:32:162:0.025:2	./.	0/1:176,4:32:180:0.022:2	./.	./.	./.
chr19	43439897	rs199525721	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:32:138:0.029:2	./.	./.	./.	./.	./.
chr19	43514132	rs1136030	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:33:76:0.053:2	./.	./.	./.	./.
chr19	43514145	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:30:70:0.057:2	./.	./.	./.	./.
chr19	43519362	rs11083680	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,56:32:124:0.452:2	0/1:49,3:33:52:0.058:2	0/1:0,103:30:103:1.00:2	0/1:0,81:32:81:1.00:2	0/1:64,55:31:119:0.462:2	0/1:0,71:32:71:1.00:2	0/1:60,48:31:108:0.444:2	0/1:0,125:31:125:1.00:2
chr19	43519442	rs10414166	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,24:33:63:0.381:2	0/1:26,17:33:43:0.395:2	0/1:0,3:34:3:1.00:2	0/1:47,41:33:88:0.466:2	0/1:0,14:32:14:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,38:33:38:1.00:2	0/1:34,28:33:62:0.452:2	0/1:0,26:33:26:1.00:2	0/1:40,35:33:75:0.467:2	0/1:0,77:33:77:1.00:2
chr19	43528921	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:151,13:30:165:0.079:2	0/1:133,9:30:142:0.063:2	./.	./.	0/1:63,9:29:72:0.125:2	./.	./.	./.	./.	./.	./.
chr19	43529026	rs2471952	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,32:32:111:0.288:2	./.	0/1:5,79:31:85:0.940:2	0/1:2,34:31:36:0.944:2	0/1:40,26:31:66:0.394:2	0/1:6,45:32:51:0.882:2	0/1:48,45:32:93:0.484:2	0/1:14,89:32:103:0.864:2
chr19	43529027	rs1058958	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,32:32:111:0.291:2	./.	0/1:5,80:31:85:0.941:2	0/1:4,34:32:38:0.895:2	0/1:40,26:32:66:0.394:2	0/1:7,45:32:52:0.865:2	0/1:50,45:32:95:0.474:2	0/1:14,89:32:103:0.864:2
chr19	43530473	rs74644375	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,5:31:24:0.208:2	./.	./.	./.	./.	./.
chr19	43568710	rs3207971	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,6:31:150:0.040:2	./.	./.
chr19	43575874	rs3746096	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,22:29:73:0.301:2	./.	0/1:56,23:28:79:0.291:2	./.	0/1:1,88:30:89:0.989:2	./.	./.
chr19	43575905	rs77035666	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:59,40:32:99:0.404:2	0/1:31,25:31:56:0.446:2	./.	./.	0/1:16,34:31:50:0.680:2	./.	./.	./.	./.	./.	./.
chr19	43579642	rs1803670	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:30:5:1.00:2	./.	0/1:38,22:32:60:0.367:2	./.	0/1:35,28:33:63:0.444:2	./.	0/1:1,116:33:117:0.991:2	./.	./.
chr19	43579679	rs1058086	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:52,52:33:104:0.500:2	0/1:34,24:32:58:0.414:2	./.	./.	0/1:40,34:31:74:0.459:2	./.	./.	./.	./.	./.	./.
chr19	43585111	rs149579909	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:100,73:30:173:0.422:2	0/1:64,76:29:140:0.543:2	./.	./.	0/1:81,57:30:139:0.413:2	./.	./.	./.	./.	./.	./.
chr19	43585200	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:33:50:0.080:2	./.	./.	./.	./.
chr19	43585216	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:130,5:32:135:0.037:2	./.	./.	./.	0/1:115,4:30:119:0.034:2	./.	./.	./.
chr19	43585217	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:132,5:33:137:0.036:2	./.	./.	./.	./.	./.	./.	./.
chr19	43585253	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,5:32:154:0.033:2	./.	0/1:115,9:32:124:0.073:2	0/1:77,4:32:81:0.049:2	0/1:145,13:30:158:0.082:2	0/1:143,5:33:148:0.034:2	0/1:125,18:31:143:0.126:2	./.
chr19	43585274	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:147,6:28:153:0.039:2	./.	./.	./.	0/1:87,8:27:95:0.084:2	0/1:145,6:27:151:0.040:2	./.	./.	./.	./.	./.
chr19	43585325	rs7248878	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:110,68:33:178:0.382:2	0/1:68,39:33:107:0.364:2	./.	./.	0/1:92,60:32:152:0.395:2	./.	./.	./.	./.	./.	./.
chr19	43585334	rs79582550	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:159,25:33:184:0.136:2	0/1:99,8:32:107:0.075:2	0/1:16,4:35:20:0.200:2	0/1:174,17:33:191:0.089:2	0/1:135,22:31:157:0.140:2	0/1:151,34:32:185:0.184:2	./.	./.	./.	./.	./.
chr19	43585350	rs375270893	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:174,7:32:181:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr19	43585364	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,6:33:155:0.039:2	./.	./.	./.
chr19	43586664	rs3887660	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,10:34:25:0.400:2	0/1:4,7:34:11:0.636:2	./.	./.	./.	./.	./.	./.	0/1:0,7:34:7:1.00:2	./.	./.
chr19	43586733	rs190954485	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,7:30:14:0.500:2	./.	./.	./.	./.	./.	./.
chr19	43679410	rs1058467	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:2,63:33:65:0.969:2	0/1:18,11:32:30:0.379:2	./.	0/1:0,25:32:25:1.00:2	0/1:42,29:32:71:0.408:2	0/1:0,59:34:59:1.00:2	0/1:2,37:33:39:0.949:2	0/1:0,81:33:81:1.00:2
chr19	43679544	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:33:104:0.038:2	./.	./.
chr19	43679559	rs147911491	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:31:99:0.040:2	./.	./.
chr19	43679602	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:33:71:0.056:2	./.	./.
chr19	43680037	rs1135901	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,13:32:35:0.371:2	./.	./.	0/1:39,29:31:68:0.426:2	./.	0/1:0,16:32:16:1.00:2	0/1:0,41:31:41:1.00:2
chr19	43680051	rs1058285	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,54:30:55:0.982:2	0/1:26,15:31:41:0.366:2	./.	0/1:0,55:31:55:1.00:2	0/1:41,32:31:73:0.438:2	0/1:0,57:32:57:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,51:31:51:1.00:2
chr19	43680147	rs17856402	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,16:30:46:0.348:2	./.	./.	0/1:27,9:31:36:0.250:2	./.	0/1:32,17:31:49:0.347:2	./.	./.
chr19	43680167	rs140327283	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,18:33:61:0.295:2	./.	./.
chr19	43680215	rs199505054	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:32:45:0.089:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	43680221	rs200537553	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:32:48:0.083:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	43680235	rs142461950	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:32:55:0.073:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	43680269	rs1058259	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,11:33:21:0.524:2	./.	./.	0/1:21,9:33:30:0.300:2	./.	0/1:2,35:33:37:0.946:2	0/1:1,56:33:57:0.982:2
chr19	43687589	rs138936030	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,10:29:26:0.385:2	./.	./.	0/1:10,13:29:23:0.565:2	./.	0/1:15,16:30:31:0.516:2	./.	./.
chr19	43687613	rs115777064	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,15:31:32:0.469:2	./.	./.	0/1:11,14:30:25:0.560:2	./.	0/1:19,16:30:35:0.457:2	./.	./.
chr19	43689004	rs2302112	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,67:30:177:0.379:2	./.	./.	0/1:84,60:31:144:0.417:2	./.	0/1:97,50:31:147:0.340:2	./.	./.
chr19	43690506	rs8107936	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,24:32:25:0.960:2	./.	./.	0/1:0,12:32:12:1.00:2	0/1:6,13:32:19:0.684:2	0/1:0,12:32:12:1.00:2	0/1:2,12:33:14:0.857:2	0/1:0,13:33:13:1.00:2
chr19	43690539	rs140275565	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,11:29:14:0.786:2	./.	./.	./.	./.
chr19	43698653	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,6:30:65:0.092:2	./.
chr19	43698664	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,6:31:66:0.091:2	./.
chr19	43698667	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,6:29:66:0.091:2	./.
chr19	43699336	rs1058718	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:32:4:0.750:2	0/1:0,119:32:119:1.00:2	0/1:66,38:30:104:0.365:2	./.	0/1:1,86:32:87:0.989:2	0/1:73,55:33:128:0.430:2	0/1:99,83:33:182:0.456:2	0/1:0,66:33:66:1.00:2	0/1:2,115:32:117:0.983:2
chr19	43699379	rs3928381	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	43699417	rs3859474	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,5:33:6:0.833:2	0/1:0,174:32:174:1.00:2	./.	./.	0/1:3,169:32:172:0.983:2	./.	0/1:100,56:34:156:0.359:2	./.	./.
chr19	43702342	rs9789333	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,57:30:57:1.00:2	./.	./.	0/1:0,39:30:39:1.00:2	./.	./.	./.	./.
chr19	43702350	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:31:110:0.036:2	./.	./.	./.
chr19	43702368	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,4:32:56:0.071:2	./.	./.	./.	0/1:92,4:31:96:0.042:2	./.	./.	./.
chr19	43702369	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,4:31:53:0.075:2	./.	./.	./.	./.	./.	./.	./.
chr19	43702387	rs137963702	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,5:32:46:0.109:2	0/1:50,4:31:54:0.074:2	./.	./.	0/1:82,4:31:86:0.047:2	./.	./.	./.
chr19	43702399	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,4:29:48:0.083:2	./.	./.	./.	./.	./.	./.
chr19	43708245	rs3170216	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,50:28:106:0.472:2	./.	./.	0/1:82,65:29:147:0.442:2	0/1:103,89:30:192:0.464:2	0/1:0,84:29:84:1.00:2	0/1:1,181:29:182:0.995:2
chr19	43708330	rs376991236	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,4:30:113:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr19	43708926	rs11673307	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,7:32:24:0.292:2	./.	./.	0/1:21,5:33:26:0.192:2	0/1:35,4:29:39:0.103:2	0/1:0,7:33:7:1.00:2	0/1:0,23:33:23:1.00:2
chr19	43708968	rs11669435	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	0/1:22,8:28:30:0.267:2	./.	0/1:0,2:34:2:1.00:2	0/1:34,8:33:43:0.190:2	0/1:52,7:34:59:0.119:2	0/1:0,12:33:12:1.00:2	0/1:1,34:31:35:0.971:2
chr19	43762316	rs2072284	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,6:30:27:0.222:2	./.	./.	./.	./.	./.	./.
chr19	43762407	rs2072285	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:31:53:0.075:2	./.
chr19	43762440	rs147266005	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:30:45:0.089:2	./.
chr19	43762476	rs2074923	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:30:62:0.065:2	./.
chr19	43763023	rs1135905	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:34:52:0.077:2	./.
chr19	43763042	rs1058281	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,5:31:62:0.081:2	./.
chr19	43763059	rs12977717	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,8:32:23:0.348:2	./.	./.	0/1:32,16:33:48:0.333:2	./.	0/1:39,22:32:61:0.361:2	0/1:24,18:32:42:0.429:2
chr19	43763144	rs2355447	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,16:33:19:0.842:2	./.	./.	./.	./.
chr19	43772263	rs201408508	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:75,4:32:79:0.051:2	./.	./.	./.	0/1:80,4:31:84:0.048:2	./.	0/1:109,5:27:114:0.044:2	./.	./.	./.
chr19	43772264	rs143419745	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,20:32:48:0.417:2	./.	./.	./.	./.	./.	./.
chr19	43772267	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:32:110:0.036:2	./.	./.	./.
chr19	43772270	rs3746296	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,32:32:84:0.381:2	./.	./.	0/1:40,25:32:65:0.385:2	./.	./.	./.	./.
chr19	43772302	rs3746297	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,21:31:58:0.362:2	./.	./.	0/1:32,21:32:53:0.396:2	./.	./.	./.	./.
chr19	43773532	rs8101191	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,8:32:19:0.421:2	./.	./.	0/1:6,5:31:11:0.455:2	./.	./.	./.	./.
chr19	43773572	rs8101210	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,9:30:28:0.321:2	./.	./.	0/1:7,5:26:12:0.417:2	./.	./.	./.	./.
chr19	43773574	rs73037706	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	0/1:2,8:33:10:0.800:2	./.	./.
chr19	43773599	rs1058071	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:0,27:29:27:1.00:2	./.	./.	0/1:7,6:30:13:0.462:2	./.	0/1:1,7:32:8:0.875:2	0/1:14,15:31:29:0.517:2	./.
chr19	43857873	rs45441892	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,62:33:65:0.954:2	./.	./.	0/1:38,41:32:79:0.519:2	./.	0/1:1,65:32:66:0.985:2	./.	./.
chr19	43858044	rs45553433	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,55:32:133:0.414:2	./.	./.	0/1:70,75:32:145:0.517:2	./.	0/1:42,43:32:85:0.506:2	./.
chr19	43858066	rs45571738	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:40,39:28:79:0.494:2	0/1:34,21:29:55:0.382:2	./.	./.	0/1:82,52:28:134:0.388:2	./.	./.	0/1:65,78:28:143:0.545:2	./.	0/1:40,35:30:75:0.467:2	0/1:62,54:28:116:0.466:2
chr19	43859815	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,8:29:69:0.116:2	./.	./.	./.	./.	./.	./.
chr19	43860192	rs71337594	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:107,67:32:174:0.385:2	0/1:104,81:32:185:0.438:2	0/1:56,44:32:100:0.440:2	0/1:117,58:32:175:0.331:2	0/1:114,63:32:177:0.356:2	0/1:65,122:32:187:0.652:2	0/1:73,96:32:169:0.568:2	0/1:121,62:32:183:0.339:2	0/1:122,36:33:158:0.228:2	0/1:110,59:32:169:0.349:2	0/1:113,59:31:172:0.343:2
chr19	43860251	rs199668750	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:117,68:32:185:0.368:2	0/1:120,68:32:188:0.362:2	0/1:78,50:31:128:0.391:2	0/1:101,70:31:171:0.409:2	0/1:118,67:30:185:0.362:2	0/1:72,109:31:181:0.602:2	0/1:80,102:31:182:0.560:2	0/1:125,59:30:184:0.321:2	0/1:123,58:32:181:0.320:2	0/1:106,75:31:181:0.414:2	0/1:108,67:31:175:0.383:2
chr19	43860255	rs200662237	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:124,63:33:187:0.337:2	0/1:118,69:32:187:0.369:2	0/1:77,49:32:126:0.389:2	0/1:106,71:33:177:0.401:2	0/1:127,63:33:190:0.332:2	0/1:69,107:33:176:0.608:2	0/1:73,106:33:179:0.592:2	0/1:66,119:33:185:0.643:2	0/1:124,61:34:185:0.330:2	0/1:106,76:32:182:0.418:2	0/1:103,68:33:171:0.398:2
chr19	43864548	rs10425835	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,50:31:53:0.943:2	0/1:1,24:32:25:0.960:2	./.	0/1:47,36:30:83:0.434:2	0/1:1,91:31:92:0.989:2	0/1:68,60:30:128:0.469:2	0/1:55,49:31:104:0.471:2	0/1:0,107:31:107:1.00:2	0/1:1,91:32:92:0.989:2	0/1:45,38:31:83:0.458:2	0/1:0,79:31:79:1.00:2
chr19	43865316	rs200660811	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:97,9:32:106:0.085:2	0/1:60,6:32:66:0.091:2	./.	0/1:167,4:35:171:0.023:2	0/1:129,6:32:135:0.044:2	0/1:100,9:31:109:0.083:2	0/1:127,8:33:135:0.059:2	0/1:119,13:33:133:0.098:2	./.	0/1:100,5:27:105:0.048:2	0/1:124,8:30:132:0.061:2
chr19	43865333	rs201266439	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:89,18:31:107:0.168:2	0/1:61,17:31:78:0.218:2	./.	0/1:157,17:31:174:0.098:2	0/1:121,6:31:127:0.047:2	0/1:115,20:30:135:0.148:2	0/1:114,18:31:132:0.136:2	0/1:120,14:32:134:0.104:2	0/1:118,9:33:127:0.071:2	0/1:98,13:32:111:0.117:2	0/1:127,11:33:138:0.080:2
chr19	43865617	rs200332346	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,3:32:21:0.143:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	43865690	rs200533680	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:150,25:30:175:0.143:2	0/1:106,30:30:137:0.221:2	./.	./.	0/1:139,50:29:189:0.265:2	./.	./.	0/1:143,43:29:186:0.231:2	./.	0/1:151,27:29:178:0.152:2	0/1:140,36:28:178:0.205:2
chr19	43865692	rs61625631	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,36:30:46:0.783:2	./.	./.	0/1:139,50:31:189:0.265:2	./.	./.	./.	0/1:119,58:31:177:0.328:2	./.
chr19	43866449	rs78718189	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:17,20:33:37:0.541:2	0/1:7,11:33:18:0.611:2	./.	./.	0/1:3,42:31:45:0.933:2	./.	./.	0/1:1,56:31:57:0.982:2	./.	0/1:11,16:32:27:0.593:2	0/1:23,21:33:44:0.477:2
chr19	43910649	rs11673673	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,12:30:16:0.750:2	0/1:84,81:31:165:0.491:2	./.	0/1:51,60:30:111:0.541:2	./.	./.	0/1:78,50:31:128:0.391:2	0/1:66,39:32:105:0.371:2	0/1:71,60:31:131:0.458:2
chr19	43920612	rs35033974	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,93:31:95:0.989:2	./.	./.	0/1:0,152:31:152:1.00:2	./.	0/1:31,61:32:92:0.663:2	./.
chr19	43922061	rs3816438	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,28:29:47:0.596:2	0/1:106,88:29:194:0.454:2	0/1:114,82:28:196:0.418:2	0/1:96,90:29:186:0.484:2	./.	./.	0/1:94,86:29:180:0.478:2	0/1:102,93:29:195:0.477:2	0/1:114,77:29:192:0.403:2
chr19	43979589	rs1055099	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:41,23:33:64:0.359:2	0/1:19,11:31:30:0.367:2	0/1:7,3:31:10:0.300:2	./.	0/1:54,51:31:105:0.486:2	./.	0/1:93,5:31:98:0.051:2	0/1:53,46:32:99:0.465:2	0/1:38,35:33:73:0.479:2	0/1:36,32:31:68:0.471:2	0/1:0,61:32:61:1.00:2
chr19	43998943	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,7:33:34:0.206:2	./.
chr19	44001345	rs7257767	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,31:32:55:0.564:2	./.	0/1:27,29:32:57:0.518:2	./.
chr19	44001379	rs11083711	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:22,12:31:34:0.353:2	0/1:11,8:28:19:0.421:2	./.	./.	0/1:32,13:31:45:0.289:2	./.	./.	./.	./.	./.	./.
chr19	44001950	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,27:30:69:0.391:2	./.	./.	./.	./.	./.
chr19	44047550	rs3547	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,16:32:16:1.00:2	0/1:0,8:31:8:1.00:2	./.	./.	0/1:0,23:31:23:1.00:2	0/1:0,18:31:18:1.00:2	0/1:1,28:30:29:0.966:2	0/1:10,11:29:21:0.524:2	./.	0/1:11,6:32:17:0.353:2	./.
chr19	44047826	rs2682557	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:32:80:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,86:31:86:1.00:2	0/1:0,103:31:103:1.00:2	0/1:0,118:32:119:1.00:2	0/1:0,117:32:117:1.00:2	0/1:0,104:33:104:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,83:32:83:1.00:2
chr19	44050195	rs25479	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:31:6:0.667:2	0/1:0,86:30:86:1.00:2	./.	./.	./.	0/1:41,46:30:87:0.529:2	0/1:1,85:31:86:0.988:2	0/1:26,32:31:58:0.552:2	0/1:0,70:31:70:1.00:2
chr19	44055726	rs25487	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,19:30:37:0.514:2	0/1:15,11:30:26:0.423:2	0/1:0,9:31:9:1.00:2	0/1:0,63:30:63:1.00:2	./.	0/1:33,26:30:59:0.441:2	0/1:35,26:29:61:0.426:2	0/1:41,24:29:65:0.369:2	0/1:0,50:30:50:1.00:2	0/1:25,21:28:46:0.457:2	0/1:0,24:30:24:1.00:2
chr19	44056341	rs25490	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,17:29:32:0.531:2	./.	./.
chr19	44056412	rs25489	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:18,9:30:27:0.333:2	0/1:8,7:33:15:0.467:2	./.	./.	./.	./.	0/1:9,10:32:19:0.526:2	./.	./.	./.	./.
chr19	44057227	rs915927	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,19:28:19:1.00:2	./.	./.	./.	0/1:15,21:28:36:0.583:2	0/1:0,26:28:26:1.00:2	0/1:10,8:28:18:0.444:2	0/1:0,32:28:32:1.00:2
chr19	44057574	rs1799782	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,39:33:78:0.500:2	./.	./.	./.	./.	./.
chr19	44098963	rs304725	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:33:10:1.00:2	0/1:7,4:33:11:0.364:2	0/1:0,9:32:9:1.00:2	0/1:3,3:30:6:0.500:2	./.	0/1:4,5:34:9:0.556:2	./.	./.
chr19	44111896	rs142455708	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,39:29:100:0.390:2	./.	./.	./.	./.	./.	./.
chr19	44116956	rs13343696	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:21,11:33:32:0.344:2	0/1:5,4:33:9:0.444:2	./.	./.	./.	./.	./.	0/1:0,31:32:31:1.00:2	0/1:8,15:33:23:0.652:2	0/1:9,10:31:19:0.526:2	0/1:27,11:33:38:0.289:2
chr19	44117052	rs77545563	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,14:31:48:0.292:2	./.	./.	./.	./.	0/1:31,12:32:43:0.279:2	./.	./.
chr19	44117582	rs10410000	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,8:28:20:0.400:2	./.	./.	./.	./.	./.	./.
chr19	44117619	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,3:32:27:0.111:2
chr19	44118188	rs3815422	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,5:28:10:0.500:2	./.	./.	./.	./.	./.	./.
chr19	44118191	rs34163641	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:6,3:33:9:0.333:2	./.	./.	./.	./.	./.	./.	0/1:0,12:30:12:1.00:2	0/1:4,6:31:10:0.600:2	0/1:6,5:31:11:0.455:2	0/1:10,4:31:14:0.286:2
chr19	44118353	rs2302421	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,37:30:69:0.536:2	./.	./.	./.	./.	./.	./.
chr19	44153100	rs4760	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,65:32:145:0.448:2	./.	./.	./.
chr19	44156472	rs2302524	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:34:11:0.545:2	./.	./.	./.	./.	./.	0/1:47,40:33:87:0.460:2	./.	./.
chr19	44174212	rs200437703	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,5:31:15:0.333:2
chr19	44222998	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,3:30:23:0.130:2
chr19	44223667	rs34051422	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,10:30:16:0.625:2	./.	./.	./.	./.	0/1:5,4:32:9:0.444:2	./.	./.
chr19	44224158	rs76979713	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,6:33:17:0.353:2	./.	./.
chr19	44224161	rs346048	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,6:31:17:0.353:2	./.	./.
chr19	44301878	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:32:91:0.044:2	./.	./.	./.	./.	./.
chr19	44302624	rs349053	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,19:31:41:0.463:2	0/1:40,30:30:70:0.429:2	0/1:21,19:31:40:0.475:2	./.	0/1:31,20:32:51:0.392:2	0/1:25,15:32:40:0.375:2	0/1:22,21:31:43:0.488:2	./.
chr19	44302673	rs79007092	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,8:15:53:0.154:2	./.	./.	./.
chr19	44303066	rs11547806	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,66:32:66:1.00:2	0/1:44,29:31:73:0.397:2	0/1:33,36:32:69:0.522:2	./.	0/1:52,38:30:90:0.422:2	0/1:32,27:32:59:0.458:2	0/1:0,76:32:76:1.00:2	./.
chr19	44306482	rs11879355	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:3,27:30:30:0.900:2	0/1:1,15:30:16:0.938:2	./.	./.	0/1:30,29:30:59:0.492:2	./.	0/1:30,43:31:73:0.589:2	./.	0/1:34,38:31:72:0.528:2	./.	0/1:0,54:32:54:1.00:2
chr19	44351107	rs10421861	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:32:6:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr19	44351694	rs2195980	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:32:68:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,16:31:16:1.00:2	0/1:41,47:32:88:0.534:2	0/1:0,55:31:55:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,38:31:38:1.00:2	0/1:49,24:31:73:0.329:2	0/1:0,75:31:76:1.00:2	0/1:58,32:31:90:0.356:2	0/1:0,60:32:60:1.00:2
chr19	44351836	rs957569	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,6:31:6:1.00:2	0/1:22,9:32:31:0.290:2	0/1:9,16:30:25:0.640:2	0/1:11,16:31:27:0.593:2	0/1:3,22:31:25:0.880:2	0/1:18,12:32:30:0.400:2	0/1:0,36:33:36:1.00:2	0/1:26,9:30:35:0.257:2	0/1:1,46:31:47:0.979:2
chr19	44352406	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:32:48:0.083:2	./.	./.	./.
chr19	44352430	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:31:55:0.073:2	./.	./.	./.
chr19	44352639	rs1061768	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,52:32:52:1.00:2	0/1:0,14:32:14:1.00:2	0/1:11,4:33:15:0.267:2	./.	./.	./.	0/1:17,7:32:24:0.292:2	./.	0/1:19,26:33:45:0.578:2	./.	0/1:1,56:32:57:0.982:2
chr19	44352665	rs2356437	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:31:51:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,12:32:12:1.00:2	0/1:29,24:33:54:0.453:2	0/1:23,24:30:47:0.511:2	0/1:31,35:30:66:0.530:2	0/1:0,24:30:24:1.00:2	0/1:27,19:31:46:0.413:2	0/1:0,54:32:54:1.00:2	0/1:20,17:32:37:0.459:2	0/1:0,75:30:75:1.00:2
chr19	44352666	rs1061769	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,7:32:12:0.583:2	0/1:30,24:32:54:0.444:2	./.	./.	./.	0/1:28,18:31:46:0.391:2	./.	0/1:19,17:30:36:0.472:2	./.
chr19	44352688	rs2883946	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,8:31:14:0.571:2	0/1:29,31:31:60:0.517:2	./.	./.	./.	0/1:36,23:31:59:0.390:2	./.	0/1:21,18:31:39:0.462:2	./.
chr19	44352769	rs17712471	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,17:32:43:0.395:2	./.	./.	./.	./.	./.	./.
chr19	44376937	rs76311065	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,15:32:33:0.455:2	./.	./.	./.	./.
chr19	44377205	rs78264306	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,20:32:38:0.526:2	0/1:20,16:32:36:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	44377357	rs239942	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:33:49:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,51:33:51:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,70:33:70:1.00:2
chr19	44377669	rs12977303	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,83:31:83:1.00:2	0/1:0,44:31:44:1.00:2	./.	0/1:64,54:31:118:0.458:2	0/1:35,23:30:58:0.397:2	0/1:74,47:30:121:0.388:2	0/1:3,54:31:57:0.947:2	0/1:72,43:30:115:0.374:2	0/1:62,46:32:108:0.426:2	0/1:45,33:31:79:0.423:2	0/1:52,59:32:111:0.532:2
chr19	44378030	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:32:111:0.037:2	./.	./.
chr19	44417575	rs417699	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,63:32:64:0.984:2	0/1:0,41:31:41:1.00:2	0/1:4,7:31:11:0.636:2	0/1:37,29:32:66:0.439:2	0/1:34,13:30:47:0.277:2	0/1:61,31:31:92:0.337:2	0/1:1,43:32:44:0.977:2	0/1:36,35:32:71:0.493:2	0/1:0,67:32:67:1.00:2	0/1:31,33:32:64:0.516:2	0/1:51,34:32:85:0.400:2
chr19	44418077	rs407731	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,76:32:76:1.00:2	0/1:0,62:33:62:1.00:2	./.	0/1:62,65:32:127:0.512:2	0/1:49,48:31:97:0.495:2	0/1:60,47:32:107:0.439:2	0/1:1,89:32:90:0.989:2	0/1:70,66:32:136:0.485:2	0/1:0,105:33:105:1.00:2	0/1:50,44:31:94:0.468:2	0/1:67,56:32:123:0.455:2
chr19	44418343	rs406968	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,106:32:108:0.981:2	0/1:0,41:31:41:1.00:2	0/1:12,12:31:24:0.500:2	0/1:47,66:31:113:0.584:2	0/1:83,49:31:132:0.371:2	0/1:72,52:31:124:0.419:2	0/1:2,115:32:117:0.983:2	0/1:100,80:31:180:0.444:2	0/1:0,156:32:156:1.00:2	0/1:69,65:32:134:0.485:2	0/1:69,72:32:141:0.511:2
chr19	44418397	rs140417622	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,52:32:107:0.486:2	./.	./.	./.	./.
chr19	44418544	rs425221	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,101:32:103:0.981:2	0/1:0,41:32:41:1.00:2	0/1:7,7:32:14:0.500:2	0/1:62,56:33:118:0.475:2	0/1:59,70:32:129:0.543:2	0/1:54,47:32:101:0.465:2	0/1:1,129:32:130:0.992:2	0/1:57,74:32:131:0.565:2	0/1:0,126:33:126:1.00:2	0/1:38,40:32:78:0.513:2	0/1:44,53:33:97:0.546:2
chr19	44418680	rs388685	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,102:31:103:0.990:2	0/1:0,64:30:64:1.00:2	0/1:10,6:31:16:0.375:2	0/1:57,59:29:116:0.509:2	0/1:52,52:28:104:0.500:2	0/1:73,79:30:152:0.520:2	0/1:0,116:29:116:1.00:2	0/1:61,79:30:140:0.564:2	0/1:53,62:31:115:0.539:2	0/1:41,50:30:91:0.549:2	0/1:80,48:30:128:0.375:2
chr19	44418693	rs388706	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,114:31:115:0.991:2	0/1:0,62:29:62:1.00:2	0/1:8,11:31:19:0.579:2	0/1:55,55:29:110:0.500:2	0/1:43,49:29:92:0.533:2	0/1:70,77:30:147:0.524:2	0/1:0,110:29:110:1.00:2	0/1:60,76:30:136:0.559:2	0/1:1,110:31:111:0.991:2	0/1:43,42:30:86:0.494:2	0/1:83,42:30:125:0.336:2
chr19	44418775	rs61731635	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,45:32:95:0.474:2	./.	./.	./.	./.	./.
chr19	44418824	rs399098	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,82:32:83:0.988:2	0/1:0,48:32:48:1.00:2	0/1:7,6:30:13:0.462:2	0/1:57,51:32:108:0.472:2	0/1:32,38:32:70:0.543:2	0/1:52,47:32:99:0.475:2	0/1:2,68:32:70:0.971:2	0/1:67,40:31:107:0.374:2	0/1:48,51:32:99:0.515:2	0/1:55,46:32:101:0.455:2	0/1:55,59:32:114:0.518:2
chr19	44419029	rs1047452	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,34:31:57:0.596:2	0/1:19,10:31:29:0.345:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	44419030	rs420242	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:31:57:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,10:28:10:1.00:2	0/1:0,62:28:62:1.00:2	0/1:0,45:28:45:1.00:2	0/1:0,56:28:56:1.00:2	0/1:0,40:28:40:1.00:2	0/1:0,65:29:65:1.00:2	0/1:0,76:29:76:1.00:2	0/1:0,55:29:55:1.00:2	0/1:0,93:28:93:1.00:2
chr19	44470036	rs142146138	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,30:32:63:0.476:2	./.
chr19	44470189	rs454301	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:31:65:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,56:31:56:1.00:2	0/1:1,80:31:81:0.988:2	0/1:0,54:32:54:1.00:2	0/1:1,73:32:74:0.986:2	0/1:0,84:32:84:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,70:32:70:1.00:2
chr19	44470420	rs439676	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,75:29:75:1.00:2	0/1:0,36:29:36:1.00:2	./.	0/1:0,71:30:71:1.00:2	0/1:0,29:29:29:1.00:2	0/1:0,64:29:64:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,68:29:68:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,81:30:81:1.00:2
chr19	44470548	rs453640	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,48:32:48:1.00:2	0/1:1,24:31:25:0.960:2	0/1:0,42:32:42:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,78:33:78:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,58:33:58:1.00:2
chr19	44470663	rs435590	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:32:53:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,49:32:49:1.00:2
chr19	44471209	rs365745	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:31:25:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,9:30:9:1.00:2	0/1:11,21:29:32:0.656:2	0/1:0,15:29:15:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,13:30:13:1.00:2	0/1:19,18:30:37:0.486:2
chr19	44471252	rs61734609	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,17:32:37:0.459:2	./.	./.	./.	./.	0/1:12,17:32:29:0.586:2
chr19	44471323	rs366111	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:33:33:1.00:2	0/1:0,22:33:22:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,37:32:37:1.00:2	0/1:1,30:32:31:0.968:2	0/1:20,22:32:42:0.524:2	0/1:0,21:33:21:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,35:34:35:1.00:2	0/1:0,29:33:29:1.00:2	0/1:24,30:31:54:0.556:2
chr19	44496070	rs431509	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,33:34:80:0.413:2	./.	0/1:52,36:33:88:0.409:2	0/1:29,25:34:54:0.463:2	0/1:36,34:33:70:0.486:2	0/1:0,93:34:93:1.00:2	0/1:49,40:33:90:0.449:2	0/1:38,38:33:76:0.500:2
chr19	44500478	rs398235	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:33:74:1.00:2	0/1:0,47:33:47:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,98:32:98:1.00:2	0/1:0,55:32:56:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,84:33:84:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,97:33:97:1.00:2
chr19	44500761	rs448921	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:32:102:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,100:32:100:1.00:2	0/1:1,49:31:50:0.980:2	0/1:2,91:32:93:0.978:2	0/1:0,46:32:46:1.00:2	0/1:0,102:32:102:1.00:2	0/1:68,32:32:100:0.320:2	0/1:0,85:32:85:1.00:2	0/1:0,102:32:102:1.00:2
chr19	44501116	rs388812	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:33:72:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,58:33:58:1.00:2	0/1:0,65:32:65:1.00:2	0/1:42,38:34:80:0.475:2	0/1:0,47:32:47:1.00:2	0/1:0,70:33:70:1.00:2
chr19	44501227	rs388471	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:32:50:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,37:33:37:1.00:2	0/1:26,20:33:46:0.435:2	0/1:0,38:32:38:1.00:2	0/1:0,48:32:49:1.00:2
chr19	44501518	rs446016	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,12:31:39:0.308:2	./.	0/1:9,19:31:28:0.679:2	0/1:9,5:32:14:0.357:2	0/1:17,14:31:31:0.452:2	0/1:13,11:32:24:0.458:2	0/1:11,13:32:24:0.542:2	0/1:25,22:32:47:0.468:2
chr19	44501627	rs35292176	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,27:34:27:1.00:2	0/1:1,15:33:16:0.938:2	./.	0/1:4,14:33:18:0.778:2	0/1:0,15:32:15:1.00:2	0/1:13,13:33:26:0.500:2	0/1:4,11:33:15:0.733:2	0/1:3,8:31:11:0.727:2	./.	0/1:4,8:33:12:0.667:2	0/1:6,14:33:20:0.700:2
chr19	44511202	rs2356549	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,113:32:115:0.983:2	0/1:0,73:32:73:1.00:2	0/1:5,9:32:14:0.643:2	0/1:86,59:32:145:0.407:2	0/1:2,91:32:93:0.978:2	0/1:70,44:32:114:0.386:2	0/1:66,49:32:115:0.426:2	0/1:94,58:32:152:0.382:2	./.	0/1:83,50:33:133:0.376:2	0/1:99,64:33:163:0.393:2
chr19	44511223	rs424147	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,123:32:123:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,15:31:15:1.00:2	0/1:1,166:33:167:0.994:2	0/1:0,95:31:95:1.00:2	0/1:0,129:32:129:1.00:2	0/1:0,132:32:132:1.00:2	0/1:0,173:32:173:1.00:2	0/1:0,177:33:179:1.00:2	0/1:0,130:32:130:1.00:2	0/1:0,181:32:181:1.00:2
chr19	44514467	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,5:31:137:0.036:2	./.	./.
chr19	44515352	rs1060880	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,28:31:71:0.394:2	0/1:35,31:31:66:0.470:2	./.	./.	0/1:33,37:31:70:0.529:2	0/1:57,41:30:98:0.418:2
chr19	44515514	rs12753	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,18:31:31:0.581:2	0/1:5,4:32:9:0.444:2	./.	./.	0/1:11,9:32:20:0.450:2	0/1:18,27:31:45:0.600:2
chr19	44535999	rs7258517	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,97:32:101:0.960:2	0/1:3,73:32:76:0.961:2	0/1:7,6:31:13:0.462:2	0/1:88,86:31:174:0.494:2	0/1:3,73:31:76:0.961:2	0/1:69,69:31:138:0.500:2	0/1:80,35:31:115:0.304:2	0/1:91,52:31:143:0.364:2	./.	0/1:82,58:31:140:0.414:2	0/1:106,75:31:182:0.414:2
chr19	44564981	rs3826941	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,116:33:116:1.00:2	0/1:1,79:32:80:0.988:2	./.	0/1:81,59:33:140:0.421:2	0/1:0,103:32:103:1.00:2	0/1:1,142:32:143:0.993:2	0/1:0,118:33:118:1.00:2	0/1:99,68:32:167:0.407:2	0/1:81,67:34:148:0.453:2	0/1:2,140:33:142:0.986:2	0/1:0,138:33:139:1.00:2
chr19	44570393	rs6509138	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:32:102:1.00:2	0/1:0,63:32:63:1.00:2	0/1:10,7:31:17:0.412:2	0/1:69,36:31:105:0.343:2	0/1:3,52:30:55:0.945:2	0/1:0,90:31:91:1.00:2	0/1:48,24:32:72:0.333:2	0/1:59,30:32:89:0.337:2	0/1:56,56:32:112:0.500:2	0/1:36,44:32:80:0.550:2	0/1:78,43:32:121:0.355:2
chr19	44570551	rs4375771	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,64:31:65:1.00:2	0/1:0,39:32:39:1.00:2	./.	0/1:43,31:31:74:0.419:2	0/1:0,29:31:29:1.00:2	0/1:0,70:31:70:1.00:2	0/1:2,27:31:29:0.931:2	0/1:28,40:31:68:0.588:2	0/1:47,27:30:74:0.365:2	0/1:0,68:32:69:1.00:2	0/1:0,57:32:57:1.00:2
chr19	44571154	rs4433920	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,34:33:34:1.00:2	0/1:0,22:33:22:1.00:2	./.	0/1:23,21:33:44:0.477:2	0/1:0,18:31:18:1.00:2	0/1:0,34:31:34:1.00:2	0/1:13,11:34:24:0.458:2	0/1:36,16:32:52:0.308:2	0/1:0,41:33:41:1.00:2	0/1:12,23:32:35:0.657:2	0/1:25,23:33:48:0.479:2
chr19	44589870	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:33:196:0.020:2
chr19	44590558	rs7255701	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,26:31:27:1.00:2	0/1:1,22:32:23:0.957:2	./.	0/1:9,13:30:22:0.591:2	0/1:1,20:31:21:0.952:2	0/1:0,41:30:41:1.00:2	0/1:15,9:31:24:0.375:2	0/1:18,11:31:29:0.379:2	0/1:0,25:31:25:1.00:2	0/1:8,11:31:19:0.579:2	0/1:18,19:33:37:0.514:2
chr19	44591360	rs8113249	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,8:31:8:1.00:2	0/1:30,28:31:58:0.483:2	0/1:0,40:31:41:1.00:2	0/1:0,44:31:44:1.00:2	0/1:21,20:32:41:0.488:2	0/1:32,22:32:54:0.407:2	0/1:0,63:32:63:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,71:32:71:1.00:2
chr19	44610665	rs2068061	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:32:50:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,4:33:4:1.00:2	0/1:27,51:32:78:0.654:2	0/1:1,50:31:51:0.980:2	0/1:26,30:32:56:0.536:2	0/1:0,38:32:38:1.00:2	0/1:39,18:31:57:0.316:2	0/1:0,62:33:62:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,75:32:75:1.00:2
chr19	44610798	rs4239529	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,4:30:4:1.00:2	0/1:34,33:32:67:0.493:2	0/1:0,37:32:37:1.00:2	0/1:29,29:32:58:0.500:2	0/1:0,32:32:32:1.00:2	0/1:21,17:32:38:0.447:2	0/1:0,67:33:67:1.00:2	0/1:0,56:32:56:1.00:2	0/1:1,65:33:66:0.985:2
chr19	44610843	rs72480796	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,38:32:100:0.380:2
chr19	44611066	rs7508149	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:33:67:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,4:32:4:1.00:2	0/1:38,52:33:90:0.578:2	0/1:0,40:32:40:1.00:2	0/1:27,32:32:59:0.542:2	0/1:2,50:32:52:0.962:2	0/1:16,34:32:50:0.680:2	0/1:0,60:33:60:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,70:32:70:1.00:2
chr19	44611420	rs4508518	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:33:46:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,5:34:5:1.00:2	0/1:23,21:32:44:0.477:2	0/1:0,30:32:30:1.00:2	0/1:18,19:31:37:0.514:2	0/1:14,12:33:26:0.462:2	0/1:26,22:31:48:0.458:2	0/1:0,49:33:49:1.00:2	0/1:0,37:32:37:1.00:2	0/1:2,31:32:33:0.939:2
chr19	44611557	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:34:50:0.080:2	./.	./.	./.	./.	./.
chr19	44611656	rs144032518	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,72:32:130:0.554:2	./.	./.	./.
chr19	44611957	rs3746322	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:30,37:32:67:0.552:2	0/1:24,21:33:45:0.467:2	./.	./.	0/1:16,11:29:27:0.407:2	0/1:29,47:31:76:0.618:2	./.	./.	./.	./.	./.
chr19	44612005	rs3746321	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:33:45:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,2:32:2:1.00:2	0/1:32,22:32:54:0.407:2	0/1:0,17:32:17:1.00:2	0/1:30,31:32:61:0.508:2	0/1:1,27:32:28:0.964:2	0/1:25,19:31:44:0.432:2	0/1:0,64:32:64:1.00:2	0/1:0,35:32:35:1.00:2	0/1:1,65:32:66:0.985:2
chr19	44612014	rs3200505	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,39:32:39:1.00:2	0/1:0,33:32:33:1.00:2	./.	0/1:31,20:32:51:0.392:2	0/1:0,20:32:20:1.00:2	0/1:27,31:31:58:0.534:2	0/1:1,29:32:30:0.967:2	0/1:24,22:32:46:0.478:2	0/1:1,64:32:65:0.985:2	0/1:0,37:32:37:1.00:2	0/1:2,60:32:62:0.968:2
chr19	44612231	rs3746319	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:33:54:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,5:34:5:1.00:2	0/1:19,21:32:40:0.525:2	0/1:0,42:32:42:1.00:2	0/1:39,35:33:74:0.473:2	0/1:0,53:33:53:1.00:2	0/1:22,31:32:53:0.585:2	0/1:0,76:34:76:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,72:33:72:1.00:2
chr19	44652954	rs2293587	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,13:31:40:0.325:2	./.	./.	./.	./.	./.	./.	0/1:79,79:31:158:0.500:2	0/1:0,145:31:145:1.00:2
chr19	44660559	rs151243299	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,48:31:99:0.485:2	./.	./.	./.	./.
chr19	44660967	rs12609635	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,31:32:84:0.369:2	./.	./.	./.	./.	0/1:0,64:33:64:1.00:2
chr19	44661300	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,4:31:45:0.089:2	./.	./.	./.	./.	./.	./.
chr19	44662002	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:32:90:0.044:2
chr19	44662053	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:32:76:0.053:2
chr19	44680489	rs2178342	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,45:32:102:0.441:2	./.	0/1:128,4:33:132:0.030:2	./.	./.	./.
chr19	44681101	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,3:33:20:0.150:2	./.	./.	./.	./.	./.	./.
chr19	44681717	rs199815905	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,16:33:45:0.356:2	./.	./.	./.	./.	./.
chr19	44732616	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:31:120:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	44732658	rs922063	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,59:32:139:0.424:2	./.	0/1:144,4:33:150:0.027:2	./.	./.	./.
chr19	44739303	rs2279073	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,15:32:33:0.455:2	0/1:17,6:31:23:0.261:2	./.	0/1:0,48:32:48:1.00:2	0/1:0,37:32:37:1.00:2	0/1:18,19:32:37:0.514:2	0/1:11,14:32:25:0.560:2	0/1:1,39:33:40:0.975:2	0/1:0,41:33:41:1.00:2	0/1:0,42:32:42:1.00:2	./.
chr19	44739399	rs2279072	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,25:33:55:0.455:2	0/1:21,19:31:40:0.475:2	./.	0/1:0,65:33:65:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,56:31:56:1.00:2	0/1:19,27:31:46:0.587:2	0/1:0,43:32:43:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,51:33:51:1.00:2	./.
chr19	44740602	rs3810137	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,19:31:39:0.487:2	./.	./.	./.	./.	./.
chr19	44778405	rs1233428	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,20:33:44:0.455:2	0/1:4,12:31:16:0.750:2	./.	0/1:1,44:32:45:0.978:2	0/1:0,36:32:36:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,34:33:34:1.00:2	0/1:30,27:32:57:0.474:2
chr19	44778797	rs2884015	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,6:31:19:0.316:2	0/1:16,7:30:23:0.304:2	./.	./.	./.	0/1:17,15:32:32:0.469:2
chr19	44778799	rs2884016	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,6:31:20:0.300:2	0/1:15,7:30:22:0.318:2	./.	./.	./.	0/1:17,15:32:32:0.469:2
chr19	44792701	rs2125579	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:80,63:33:143:0.441:2	0/1:68,34:32:102:0.333:2	./.	0/1:1,105:33:106:0.991:2	0/1:0,81:32:81:1.00:2	0/1:91,59:32:150:0.393:2	0/1:58,69:33:127:0.543:2	0/1:2,130:32:132:0.985:2	0/1:2,159:34:161:0.988:2	0/1:2,85:32:87:0.977:2	./.
chr19	44792969	rs2609908	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,35:32:79:0.443:2	0/1:34,17:31:51:0.333:2	0/1:7,6:32:13:0.462:2	0/1:0,78:31:78:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,75:33:75:1.00:2	0/1:0,66:32:66:1.00:2	0/1:61,51:31:112:0.455:2
chr19	44831613	rs61733038	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,18:31:40:0.450:2	./.	./.
chr19	44831989	rs2609881	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,12:30:27:0.444:2	./.	./.	0/1:103,86:28:189:0.455:2	0/1:116,77:30:193:0.399:2	./.	./.	./.	0/1:91,90:29:181:0.497:2
chr19	44832684	rs2609880	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,36:30:74:0.486:2	0/1:22,19:28:41:0.463:2	0/1:4,6:31:10:0.600:2	0/1:0,98:29:98:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,69:29:69:1.00:2	0/1:0,65:30:65:1.00:2	0/1:0,77:29:77:1.00:2	0/1:1,92:30:93:0.989:2	0/1:0,77:30:77:1.00:2	0/1:60,67:30:127:0.528:2
chr19	44832875	rs2722722	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,67:33:128:0.523:2	0/1:24,42:32:66:0.636:2	0/1:10,8:32:18:0.444:2	0/1:0,126:32:127:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,150:32:150:1.00:2	0/1:1,73:32:74:0.986:2	0/1:0,142:32:142:1.00:2	0/1:0,135:33:135:1.00:2	0/1:0,104:33:104:1.00:2	0/1:91,69:33:160:0.431:2
chr19	44832933	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:31:150:0.027:2	./.	./.	./.	./.	./.
chr19	44832992	rs2722723	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,43:33:85:0.506:2	0/1:28,22:33:50:0.440:2	0/1:10,4:32:14:0.286:2	0/1:0,64:33:64:1.00:2	0/1:3,83:32:86:0.965:2	0/1:0,84:32:84:1.00:2	0/1:3,58:32:61:0.951:2	0/1:0,84:33:84:1.00:2	0/1:0,96:33:96:1.00:2	0/1:1,63:33:64:0.984:2	0/1:63,44:33:107:0.411:2
chr19	44833506	rs4325673	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:59,51:33:110:0.464:2	0/1:34,25:33:59:0.424:2	./.	0/1:1,112:32:114:0.991:2	0/1:1,79:31:80:0.988:2	0/1:1,111:32:112:0.991:2	0/1:0,75:32:75:1.00:2	0/1:0,106:32:106:1.00:2	0/1:2,108:33:110:0.982:2	0/1:1,97:33:98:0.990:2	0/1:90,57:32:148:0.388:2
chr19	44833851	rs4280359	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,28:33:59:0.475:2	0/1:11,16:33:27:0.593:2	./.	0/1:0,51:32:51:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,63:33:63:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,48:34:48:1.00:2	0/1:1,36:33:38:0.973:2	0/1:41,50:32:91:0.549:2
chr19	44840789	rs2571104	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,62:32:113:0.549:2	0/1:29,33:32:62:0.532:2	0/1:14,6:33:20:0.300:2	0/1:0,94:33:94:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,65:32:65:1.00:2	0/1:1,86:32:87:0.989:2	0/1:0,93:33:93:1.00:2	0/1:0,69:33:69:1.00:2	0/1:60,59:32:119:0.496:2
chr19	44890632	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:31:168:0.024:2	./.	0/1:171,7:31:178:0.039:2	./.	./.	./.
chr19	44890654	rs149238831	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:159,9:31:168:0.054:2	0/1:98,5:31:103:0.049:2	./.	./.	./.	0/1:187,11:30:198:0.056:2	./.	0/1:182,15:31:197:0.076:2	./.	./.	./.
chr19	44890685	rs73039936	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:141,22:31:163:0.135:2	0/1:78,11:33:89:0.124:2	./.	./.	./.	0/1:175,20:33:195:0.103:2	./.	0/1:163,24:33:187:0.128:2	0/1:178,9:33:187:0.048:2	0/1:169,5:31:174:0.029:2	./.
chr19	44890697	rs1836280	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,122:32:153:0.797:2	0/1:14,74:32:88:0.841:2	./.	0/1:1,184:33:185:0.995:2	0/1:1,128:32:129:0.992:2	./.	0/1:1,153:33:155:0.994:2	0/1:115,64:32:179:0.358:2	0/1:111,83:34:194:0.428:2	0/1:100,74:32:174:0.425:2	0/1:3,143:33:146:0.979:2
chr19	44890801	rs12610859	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,185:33:185:1.00:2	0/1:0,103:32:103:1.00:2	./.	0/1:1,145:33:146:0.993:2	0/1:0,109:32:109:1.00:2	0/1:175,10:32:185:0.054:2	0/1:0,160:33:160:1.00:2	0/1:105,81:33:186:0.435:2	0/1:21,163:33:184:0.886:2	0/1:104,70:33:174:0.402:2	0/1:2,188:33:190:0.989:2
chr19	44890824	rs138614800	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,10:25:179:0.056:2	./.	./.
chr19	44890825	rs148896964	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,9:32:180:0.050:2	./.	./.
chr19	44891089	rs199819861	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,7:29:113:0.062:2
chr19	44891126	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:32:56:0.071:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	44891405	rs151111866	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,52:32:116:0.448:2	./.	./.	./.	./.
chr19	44891784	rs2571089	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,62:32:64:0.969:2	0/1:0,41:30:41:1.00:2	0/1:0,2:32:2:1.00:2	0/1:1,69:32:70:0.986:2	0/1:1,64:31:65:0.985:2	./.	0/1:2,62:32:64:0.969:2	0/1:1,70:32:71:0.986:2	0/1:1,62:34:63:0.984:2	0/1:0,55:32:55:1.00:2	0/1:1,84:33:85:0.988:2
chr19	44892153	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:30:112:0.036:2	./.	./.	./.	./.
chr19	44892206	rs73557001	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:95,4:33:99:0.040:2	./.	./.	0/1:125,6:32:131:0.046:2	0/1:108,4:31:112:0.036:2	./.	0/1:98,6:33:104:0.058:2	0/1:141,4:32:145:0.028:2	0/1:114,11:33:125:0.088:2	0/1:121,10:32:131:0.076:2	0/1:151,5:33:157:0.032:2
chr19	44892225	rs114985922	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,6:30:115:0.052:2	./.	./.	./.	./.	0/1:105,9:30:114:0.079:2	0/1:105,7:29:112:0.063:2	0/1:140,4:32:144:0.028:2
chr19	44892228	rs117953191	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,6:32:110:0.055:2	./.	./.	./.	./.	0/1:100,9:32:109:0.083:2	0/1:100,8:32:108:0.074:2	0/1:136,4:32:140:0.029:2
chr19	44896570	rs144077949	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,27:30:92:0.293:2	./.	./.	./.	./.	./.
chr19	44901332	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:30:82:0.049:2	./.	./.
chr19	44901343	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:31:94:0.043:2	./.	./.
chr19	44932521	rs55700709	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,54:33:114:0.474:2	./.	./.	./.
chr19	44932972	rs1434579	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:73,64:32:138:0.467:2	0/1:51,49:32:100:0.490:2	./.	0/1:0,142:32:142:1.00:2	0/1:56,54:32:110:0.491:2	./.	0/1:4,125:32:129:0.969:2	./.	0/1:94,65:33:159:0.409:2	0/1:61,64:32:125:0.512:2	0/1:85,78:33:163:0.479:2
chr19	44933504	rs59505617	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,72:32:126:0.571:2	./.	./.	./.	./.	./.
chr19	44933706	rs57014690	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,105:31:105:1.00:2	./.	./.	./.	./.	./.
chr19	44933947	rs12151338	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,23:31:40:0.575:2	0/1:12,14:32:26:0.538:2	./.	0/1:0,43:31:43:1.00:2	0/1:16,13:31:29:0.448:2	./.	0/1:2,34:32:36:0.944:2	./.	0/1:32,16:31:48:0.333:2	0/1:12,12:31:24:0.500:2	0/1:32,25:31:57:0.439:2
chr19	44934489	rs2571174	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,83:31:83:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,83:31:83:1.00:2	0/1:0,75:31:75:1.00:2	0/1:54,55:31:109:0.505:2	0/1:0,93:32:93:1.00:2	0/1:0,94:31:94:1.00:2	0/1:0,143:32:143:1.00:2
chr19	44934653	rs8113370	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,41:31:41:1.00:2	./.	./.	./.	./.	./.
chr19	44947050	rs204548	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:63,60:32:123:0.488:2	0/1:28,26:32:54:0.481:2	./.	./.	0/1:73,39:32:112:0.348:2	0/1:55,52:32:107:0.486:2	./.	0/1:93,68:32:161:0.422:2	0/1:83,55:33:138:0.399:2	0/1:51,68:33:119:0.571:2	0/1:72,59:33:131:0.450:2
chr19	44981375	rs954314	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:53,37:33:90:0.411:2	0/1:24,24:32:48:0.500:2	./.	0/1:113,4:33:117:0.034:2	0/1:45,21:32:66:0.318:2	0/1:1,107:32:108:0.991:2	./.	0/1:59,44:32:103:0.427:2	0/1:57,30:34:87:0.345:2	0/1:47,48:33:95:0.505:2	./.
chr19	44981525	rs2020083	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,19:31:37:0.514:2	./.	./.	./.
chr19	44981883	rs1897820	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:25,18:32:44:0.419:2	0/1:16,15:33:31:0.484:2	./.	./.	0/1:30,12:33:42:0.286:2	0/1:0,40:32:40:1.00:2	./.	0/1:3,55:31:58:0.948:2	0/1:41,17:33:58:0.293:2	0/1:35,26:32:61:0.426:2	./.
chr19	44983567	rs2253563	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,17:33:38:0.447:2	0/1:17,11:34:28:0.393:2	./.	./.	0/1:34,21:31:55:0.382:2	0/1:1,48:32:49:0.980:2	./.	0/1:0,56:32:56:1.00:2	0/1:42,36:33:78:0.462:2	0/1:30,28:32:58:0.483:2	./.
chr19	45001346	rs2571108	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,4:31:8:0.500:2	0/1:3,3:31:6:0.500:2	./.	./.	0/1:7,3:32:10:0.300:2	0/1:0,12:31:12:1.00:2	./.	0/1:7,3:30:10:0.300:2	./.	0/1:8,3:32:11:0.273:2	./.
chr19	45004305	rs12977470	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,7:28:19:0.368:2	0/1:12,11:29:23:0.478:2	0/1:0,5:24:5:1.00:2	0/1:28,15:31:43:0.349:2	0/1:32,26:30:58:0.448:2	./.	0/1:1,34:31:35:0.971:2	0/1:34,40:32:74:0.541:2	0/1:27,26:32:53:0.491:2	0/1:6,14:32:20:0.700:2	0/1:0,22:28:22:1.00:2
chr19	45016116	rs8100718	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,31:29:71:0.437:2	0/1:21,29:30:50:0.580:2	0/1:0,17:30:17:1.00:2	0/1:51,44:29:95:0.463:2	0/1:29,47:30:76:0.618:2	./.	0/1:0,83:30:83:1.00:2	0/1:57,55:29:112:0.491:2	0/1:48,45:31:93:0.484:2	0/1:49,60:30:109:0.550:2	0/1:0,90:30:90:1.00:2
chr19	45017249	rs1465723	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:18,20:31:38:0.526:2	0/1:8,10:32:18:0.556:2	./.	./.	0/1:29,24:33:53:0.453:2	./.	./.	0/1:41,23:32:64:0.359:2	./.	./.	./.
chr19	45021210	rs10414398	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,27:31:49:0.551:2	./.	./.	./.	./.	./.
chr19	45024581	rs12982449	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,44:28:44:1.00:2	0/1:0,23:28:23:1.00:2	0/1:0,5:31:5:1.00:2	./.	0/1:0,75:27:75:1.00:2	0/1:35,27:26:62:0.435:2	0/1:37,29:29:66:0.439:2	0/1:54,44:28:98:0.449:2	0/1:49,40:28:89:0.449:2	0/1:0,55:29:55:1.00:2	0/1:1,53:29:54:0.981:2
chr19	45028112	rs35443082	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,85:31:192:0.443:2	./.	./.	./.	./.
chr19	45028169	rs7260180	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,185:32:187:0.995:2	0/1:2,120:32:122:0.984:2	0/1:0,36:31:36:1.00:2	./.	0/1:0,189:32:189:1.00:2	0/1:96,94:31:190:0.495:2	0/1:101,99:32:200:0.495:2	0/1:100,98:32:198:0.495:2	0/1:103,81:33:184:0.440:2	0/1:0,178:32:178:1.00:2	0/1:0,183:32:183:1.00:2
chr19	45029208	rs10408247	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,83:31:170:0.488:2	./.	./.	./.	./.	./.
chr19	45033485	rs62116895	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,54:33:123:0.439:2	./.	./.	./.	./.
chr19	45121424	rs10412507	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,32:32:67:0.478:2	0/1:29,18:32:47:0.383:2	0/1:4,4:32:8:0.500:2	0/1:66,46:33:112:0.411:2	0/1:73,65:32:138:0.471:2	0/1:57,38:31:95:0.400:2	./.	0/1:1,127:33:128:0.992:2	0/1:44,53:34:98:0.546:2	0/1:61,21:33:82:0.256:2	0/1:0,67:33:67:1.00:2
chr19	45138674	rs66807970	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:1,11:31:12:0.917:2	0/1:1,3:34:4:0.750:2	./.	./.	./.	./.	0/1:5,5:31:10:0.500:2	./.	./.	./.	./.
chr19	45150614	rs1058402	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:43,28:30:71:0.394:2	0/1:16,16:31:32:0.500:2	./.	./.	0/1:54,52:30:106:0.491:2	./.	./.	./.	./.	./.	./.
chr19	45153113	rs35959395	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,40:32:95:0.421:2	./.	./.	./.	./.	./.
chr19	45162038	rs203710	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,104:32:104:1.00:2	0/1:0,93:32:94:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,122:32:122:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,141:32:141:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,156:32:156:1.00:2	0/1:0,159:33:159:1.00:2	0/1:69,63:32:132:0.477:2	0/1:1,150:32:151:0.993:2
chr19	45162103	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:33:161:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	45162189	rs35385129	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:50,37:33:87:0.425:2	0/1:42,41:32:83:0.494:2	./.	./.	./.	./.	0/1:75,53:32:128:0.414:2	./.	./.	./.	./.
chr19	45175974	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:92,6:31:98:0.061:2	./.	./.	./.	./.	./.	./.
chr19	45176028	rs35695969	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:31:9:0.556:2	./.	./.	./.	./.	./.	0/1:67,63:32:130:0.485:2	./.	./.
chr19	45179631	rs76075198	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,27:31:52:0.519:2	./.	./.	./.	./.	./.	./.
chr19	45202640	rs2119660	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,66:32:113:0.584:2	./.	./.
chr19	45204726	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:30:41:0.098:2	./.
chr19	45206695	rs894189	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,30:31:77:0.390:2	0/1:14,21:31:35:0.600:2	./.	./.	./.	./.	./.	./.	0/1:63,46:32:109:0.422:2	./.	./.
chr19	45211407	rs61744497	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,86:33:195:0.441:2	./.	./.	./.
chr19	45213752	rs62120572	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:32:14:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	45213778	rs146757817	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,28:33:56:0.500:2	./.	./.
chr19	45261705	rs34967149	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:24,28:30:52:0.538:2	0/1:9,16:31:25:0.640:2	./.	0/1:23,23:30:46:0.500:2	./.	0/1:33,22:30:55:0.400:2	./.	./.	./.	./.	./.
chr19	45284266	rs35106910	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:30,13:27:43:0.302:2	0/1:6,5:28:11:0.455:2	./.	0/1:28,23:28:51:0.451:2	./.	0/1:28,23:30:51:0.451:2	./.	./.	./.	./.	./.
chr19	45316704	rs28399656	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,6:31:18:0.333:2	./.	./.	./.	./.	./.
chr19	45316804	rs3810141	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:6,20:30:26:0.769:2	0/1:0,15:31:15:1.00:2	./.	0/1:12,38:31:50:0.760:2	./.	0/1:14,18:30:32:0.563:2	./.	./.	./.	./.	./.
chr19	45316807	rs3810140	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:6,21:30:27:0.778:2	0/1:3,15:33:18:0.833:2	./.	0/1:15,39:32:54:0.722:2	./.	0/1:14,18:31:32:0.563:2	./.	./.	./.	./.	./.
chr19	45322744	rs1135062	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,22:31:54:0.407:2	./.	./.	./.	0/1:53,22:30:75:0.293:2	./.	0/1:16,24:30:40:0.600:2	0/1:15,20:30:35:0.571:2
chr19	45324138	rs28399637	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:26,34:31:60:0.567:2	0/1:10,12:32:22:0.545:2	0/1:0,16:31:16:1.00:2	./.	0/1:30,41:31:71:0.577:2	0/1:49,38:31:87:0.437:2	0/1:32,39:32:71:0.549:2	0/1:48,40:30:88:0.455:2	0/1:0,70:32:70:1.00:2	0/1:24,18:32:42:0.429:2	0/1:13,24:29:37:0.649:2
chr19	45368715	rs374284287	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,26:29:48:0.542:2	./.	./.	./.	./.	./.	./.	./.
chr19	45389224	rs283814	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:30:40:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,79:29:79:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,77:29:77:1.00:2	0/1:0,40:30:40:1.00:2	0/1:26,16:29:42:0.381:2	0/1:0,48:30:48:1.00:2
chr19	45391505	rs41290128	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,4:30:79:0.051:2
chr19	45391573	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:33:167:0.024:2	./.	./.
chr19	45394839	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	./.
chr19	45395714	rs157581	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,47:32:100:0.470:2	0/1:0,86:32:86:1.00:2	./.	./.	./.	0/1:43,26:33:69:0.377:2	./.
chr19	45396096	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,7:33:188:0.037:2	./.	./.	./.	./.	./.
chr19	45396118	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,7:29:172:0.041:2	./.	./.	./.	./.	./.
chr19	45396144	rs11556505	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,54:32:98:0.551:2	0/1:7,128:31:135:0.948:2	./.	./.	./.	0/1:85,49:32:134:0.366:2	./.
chr19	45396153	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,7:29:132:0.053:2	./.	./.	./.	./.	./.
chr19	45397072	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:30:104:0.038:2	./.	./.	./.	./.	./.
chr19	45409167	rs440446	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:33:6:0.667:2	0/1:19,5:28:24:0.208:2	0/1:0,12:33:12:1.00:2	0/1:0,20:31:20:1.00:2	0/1:9,16:32:25:0.640:2	0/1:16,17:31:33:0.515:2	0/1:15,14:32:29:0.483:2	0/1:11,9:32:20:0.450:2	0/1:16,9:32:25:0.360:2
chr19	45418196	rs72654453	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,5:34:49:0.102:2	0/1:23,5:33:28:0.179:2	./.	0/1:59,6:32:65:0.092:2	0/1:39,9:30:48:0.188:2	./.	0/1:57,8:33:65:0.123:2	0/1:82,7:33:89:0.079:2	0/1:57,12:32:69:0.174:2	0/1:41,6:32:47:0.128:2	./.
chr19	45448036	rs1132899	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:17,18:30:35:0.514:2	0/1:7,6:31:13:0.462:2	./.	./.	0/1:13,18:30:31:0.581:2	./.	0/1:30,17:30:47:0.362:2	0/1:35,29:30:64:0.453:2	./.	0/1:1,31:29:32:0.969:2	./.
chr19	45448465	rs5167	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,14:31:37:0.378:2	./.	0/1:20,26:31:46:0.565:2	0/1:25,26:30:51:0.510:2	./.	0/1:0,47:29:47:1.00:2	./.
chr19	45476422	rs204481	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:32:18:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,22:32:22:1.00:2	./.	0/1:17,9:31:26:0.346:2	0/1:0,15:32:15:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,11:32:11:1.00:2
chr19	45488567	rs204471	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:28:47:1.00:2	0/1:0,19:29:19:1.00:2	0/1:0,7:27:7:1.00:2	0/1:0,35:28:36:1.00:2	0/1:0,41:28:41:1.00:2	0/1:0,60:29:60:1.00:2	0/1:34,36:29:70:0.514:2	0/1:43,27:28:70:0.386:2	0/1:0,47:29:47:1.00:2	0/1:0,35:28:35:1.00:2	0/1:0,46:28:46:1.00:2
chr19	45490447	rs142500092	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,41:31:79:0.519:2	./.	./.	./.	./.	./.	./.	./.
chr19	45490570	rs3786505	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:33:9:0.556:2	./.	0/1:40,37:30:77:0.481:2	./.	./.	./.	./.	0/1:0,50:30:50:1.00:2	0/1:28,34:30:62:0.548:2
chr19	45490636	rs204468	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,33:28:34:1.00:2	0/1:0,12:26:12:1.00:2	./.	0/1:1,47:29:48:0.979:2	0/1:40,27:28:67:0.403:2	0/1:0,54:28:54:1.00:2	0/1:43,31:29:74:0.419:2	0/1:43,30:29:73:0.411:2	0/1:0,48:29:48:1.00:2	./.	0/1:19,15:28:34:0.441:2
chr19	45494158	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:126,4:31:130:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr19	45556130	rs11667851	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,29:27:40:0.725:2	./.	./.	./.	./.	./.	./.
chr19	45561063	rs4803794	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:29:64:1.00:2	0/1:0,46:29:46:1.00:2	0/1:0,4:28:4:1.00:2	0/1:0,81:29:81:1.00:2	0/1:1,134:29:135:0.993:2	0/1:0,73:30:73:1.00:2	0/1:0,118:30:118:1.00:2	0/1:0,102:30:102:1.00:2	0/1:0,90:31:90:1.00:2	0/1:0,75:30:75:1.00:2	0/1:0,77:30:77:1.00:2
chr19	45565391	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,17:16:97:0.175:2	./.	./.	./.
chr19	45570702	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.
chr19	45594170	rs3178166	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,14:30:14:1.00:2	0/1:0,12:30:12:1.00:2	./.	0/1:13,11:30:24:0.458:2	./.	0/1:9,9:30:18:0.500:2	./.	./.	0/1:0,12:30:12:1.00:2	0/1:0,11:29:11:1.00:2	0/1:11,12:31:23:0.522:2
chr19	45594504	rs17642665	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,11:32:26:0.423:2	0/1:6,10:33:16:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	45594595	rs3745157	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:24,34:32:58:0.586:2	0/1:21,12:32:33:0.364:2	./.	0/1:47,36:32:83:0.434:2	./.	0/1:54,41:32:95:0.432:2	./.	./.	0/1:0,82:34:82:1.00:2	0/1:1,67:33:68:0.985:2	0/1:38,40:32:78:0.513:2
chr19	45666511	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:31:68:0.059:2	./.
chr19	45683470	rs189672488	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:27:7:0.429:2	./.	./.	./.	./.
chr19	45728059	rs10411314	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:78,70:29:148:0.473:2	0/1:52,51:28:103:0.495:2	./.	./.	./.	./.	0/1:119,73:30:192:0.380:2	./.	./.	./.	./.
chr19	45728123	rs10410003	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:41,52:32:94:0.559:2	0/1:37,29:32:66:0.439:2	./.	./.	./.	./.	0/1:33,19:31:52:0.365:2	./.	./.	./.	./.
chr19	45774930	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:31:83:0.048:2	./.	./.
chr19	45801018	rs173179	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,6:28:6:1.00:2	0/1:0,4:28:4:1.00:2	0/1:0,2:28:2:1.00:2	0/1:0,6:26:6:1.00:2	0/1:0,4:29:4:1.00:2	./.	0/1:0,5:26:5:1.00:2	0/1:0,6:28:6:1.00:2	0/1:0,5:26:5:1.00:2	./.	0/1:0,4:29:4:1.00:2
chr19	45810035	rs4884	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:28:68:1.00:2	0/1:1,25:26:26:0.962:2	0/1:7,6:28:13:0.462:2	0/1:53,57:28:110:0.518:2	0/1:0,160:27:160:1.00:2	./.	0/1:4,163:27:167:0.976:2	0/1:99,85:27:184:0.462:2	0/1:0,132:29:132:1.00:2	0/1:62,54:29:116:0.466:2	./.
chr19	45818835	rs1133190	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,6:33:10:0.600:2	./.	./.	0/1:0,20:32:20:1.00:2	0/1:17,14:31:31:0.452:2	0/1:7,6:33:13:0.462:2	0/1:0,10:32:10:1.00:2	0/1:13,10:33:23:0.435:2	0/1:0,15:33:15:1.00:2	./.	./.
chr19	45821217	rs1803285	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,4:32:102:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr19	45848879	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,9:31:26:0.346:2
chr19	45849909	rs9749618	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:33:7:0.714:2	./.	./.	./.	./.	0/1:5,8:32:13:0.615:2	./.	./.
chr19	45854291	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,6:31:74:0.081:2	./.	./.	./.	./.	./.	./.	./.
chr19	45854919	rs13181	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,5:33:9:0.556:2	0/1:28,25:33:53:0.472:2	./.	./.	./.	./.	0/1:30,39:33:69:0.565:2	./.	0/1:38,21:33:59:0.356:2
chr19	45855524	rs1052555	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,9:31:14:0.643:2	0/1:58,50:31:109:0.463:2	./.	./.	./.	./.	0/1:60,37:32:97:0.381:2	./.	0/1:41,42:31:83:0.506:2
chr19	45868309	rs238406	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:33:11:1.00:2	0/1:51,56:33:107:0.523:2	./.	0/1:58,50:33:108:0.463:2	0/1:0,169:33:169:1.00:2	./.	0/1:0,96:34:96:1.00:2	./.	0/1:44,34:34:78:0.436:2
chr19	45909934	rs967591	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,9:28:18:0.500:2	0/1:0,67:28:67:1.00:2	./.	./.	./.	./.	0/1:33,34:31:67:0.507:2	./.	./.
chr19	45910003	rs8113779	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,5:28:14:0.357:2	0/1:1,68:29:69:0.986:2	./.	./.	./.	./.	0/1:18,28:29:46:0.609:2	./.	./.
chr19	45912002	rs735482	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,19:30:19:1.00:2	./.	./.	./.	./.	0/1:16,7:30:23:0.304:2	./.	./.
chr19	45912343	rs762562	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:33:2:1.00:2	0/1:0,22:33:22:1.00:2	./.	./.	./.	./.	0/1:10,11:33:21:0.524:2	./.	./.
chr19	45912406	rs2336219	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,32:31:32:1.00:2	./.	./.	./.	./.	0/1:26,14:32:40:0.350:2	./.	./.
chr19	45912750	rs118178942	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	./.	./.	./.	0/1:2,3:29:5:0.600:2	./.	./.
chr19	45917304	rs372255204	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:31:50:0.080:2	./.	./.	./.	./.	./.
chr19	45923653	rs11615	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:28:7:0.571:2	0/1:4,61:30:65:0.938:2	0/1:49,37:30:86:0.430:2	./.	./.	./.	0/1:53,22:30:75:0.293:2	./.	0/1:29,33:29:62:0.532:2
chr19	45971961	rs2282695	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,5:29:16:0.313:2	0/1:7,9:30:16:0.563:2	0/1:12,4:31:16:0.250:2	./.	./.	0/1:11,10:31:21:0.476:2	./.	0/1:12,8:32:20:0.400:2
chr19	45998247	rs10401270	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,25:29:45:0.556:2	./.	./.	./.	./.
chr19	45998346	rs2298887	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,39:31:68:0.582:2	./.	./.	./.	./.	./.	./.	./.
chr19	46002456	rs3745821	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:32:7:0.571:2	./.	./.	./.	./.	./.	./.	./.
chr19	46002728	rs182191080	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,36:31:72:0.500:2	./.	./.	./.	./.	./.	./.
chr19	46002766	rs45440199	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,36:30:73:0.493:2	./.	./.	./.	./.	./.	./.	./.
chr19	46025777	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.
chr19	46026970	rs11880111	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,35:30:69:0.507:2	./.	./.	./.	./.	./.	./.	./.
chr19	46057081	rs3826860	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,4:26:16:0.250:2	0/1:8,4:27:12:0.333:2	./.	0/1:22,13:27:35:0.371:2	0/1:0,12:28:12:1.00:2	0/1:0,19:26:19:1.00:2	./.	0/1:16,8:26:24:0.333:2	0/1:12,12:28:24:0.500:2	0/1:8,6:28:14:0.429:2	./.
chr19	46094597	rs3745820	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,38:31:66:0.576:2	0/1:52,28:30:80:0.350:2	0/1:55,45:31:100:0.450:2	./.	./.	0/1:32,39:31:72:0.549:2	./.	./.
chr19	46095651	rs3745818	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,74:29:174:0.425:2	0/1:87,76:29:163:0.466:2	0/1:82,90:30:172:0.523:2	./.	./.	0/1:91,83:31:174:0.477:2	./.	./.
chr19	46112928	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,5:20:37:0.135:2
chr19	46119728	rs376045352	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,14:32:30:0.467:2	./.	./.
chr19	46124531	rs36062041	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,29:31:64:0.453:2	./.	0/1:64,41:31:105:0.390:2	./.	./.	./.
chr19	46124564	rs146103183	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,28:30:49:0.571:2	./.	./.	./.	./.	./.	./.	./.
chr19	46127999	rs36013288	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,26:30:49:0.531:2	./.	./.	./.	./.
chr19	46133251	rs7251952	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,23:33:60:0.383:2	0/1:15,16:32:31:0.516:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	46133256	rs7252175	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,25:32:60:0.417:2	0/1:14,14:30:28:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	46136186	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:32:164:0.024:2	./.	./.	./.	./.	./.
chr19	46137712	rs144104945	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:31:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	46141845	rs12151009	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,16:31:45:0.356:2	0/1:11,9:31:20:0.450:2	./.	./.	./.	0/1:20,18:32:38:0.474:2	./.	./.	./.	./.	./.
chr19	46181392	rs1800437	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:24,14:33:38:0.368:2	0/1:12,16:32:28:0.571:2	./.	./.	./.	./.	./.	0/1:28,36:32:64:0.563:2	./.	./.	./.
chr19	46206249	rs117220573	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,95:33:188:0.505:2	./.	./.
chr19	46206262	rs17850756	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,11:29:21:0.524:2	./.	0/1:109,80:30:189:0.423:2	0/1:1,185:30:186:0.995:2	0/1:118,73:30:191:0.382:2	./.	./.	0/1:110,67:30:177:0.379:2	0/1:88,96:30:184:0.522:2
chr19	46216642	rs11537711	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	0/1:19,16:29:35:0.457:2	./.	./.	./.	./.	./.
chr19	46268902	rs2341097	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:17,12:32:29:0.414:2	0/1:13,11:31:24:0.458:2	0/1:2,3:31:5:0.600:2	./.	0/1:20,12:30:32:0.375:2	./.	0/1:12,16:31:28:0.571:2	./.	./.	0/1:23,18:31:41:0.439:2	0/1:6,14:30:20:0.700:2
chr19	46269076	rs2014576	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,7:31:14:0.500:2	./.	./.	./.	0/1:2,4:31:6:0.667:2	0/1:6,5:30:11:0.455:2	./.	./.	./.	0/1:4,4:31:8:0.500:2	0/1:1,3:27:5:0.750:2
chr19	46269313	rs2014377	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,58:30:60:0.967:2	0/1:0,56:30:56:1.00:2	0/1:0,12:31:12:1.00:2	./.	0/1:0,170:30:170:1.00:2	0/1:0,96:30:96:1.00:2	0/1:1,121:30:122:0.992:2	0/1:83,81:30:164:0.494:2	0/1:66,68:31:134:0.507:2	0/1:0,90:30:90:1.00:2	0/1:0,70:30:70:1.00:2
chr19	46275976	rs527221	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:34:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:26,8:34:34:0.235:2
chr19	46289392	rs8110017	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,13:30:13:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,2:32:2:1.00:2	./.	0/1:0,32:30:32:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,19:31:19:1.00:2	0/1:27,12:29:39:0.308:2	0/1:24,16:29:40:0.400:2	0/1:0,16:31:16:1.00:2	0/1:0,9:30:9:1.00:2
chr19	46289503	rs8109951	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:12,17:30:29:0.586:2	0/1:11,4:33:15:0.267:2	0/1:1,4:28:5:0.800:2	./.	0/1:21,30:29:51:0.588:2	0/1:18,8:30:26:0.308:2	0/1:20,17:28:37:0.459:2	./.	./.	0/1:7,13:28:22:0.650:2	0/1:8,7:27:15:0.467:2
chr19	46289509	rs11545326	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:15,8:28:24:0.348:2	0/1:2,7:26:10:0.778:2	./.	./.	./.	./.	./.	0/1:22,23:28:47:0.511:2	0/1:6,5:24:12:0.455:2	0/1:13,6:25:20:0.316:2	./.
chr19	46294291	rs199670391	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,23:13:160:0.146:2
chr19	46317832	rs371400604	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,4:33:133:0.030:2	./.	./.	./.	./.	./.	./.
chr19	46319415	rs1132645	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,5:32:6:0.833:2	0/1:0,5:29:5:1.00:2	0/1:0,2:31:2:1.00:2	./.	0/1:1,4:31:5:0.800:2	./.	./.	./.	./.	0/1:0,6:26:6:1.00:2	./.
chr19	46321272	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,17:11:119:0.143:2	0/1:106,11:14:117:0.094:2	./.	./.	./.
chr19	46327053	rs7251942	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,29:31:74:0.392:2
chr19	46329626	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:31:100:0.040:2	./.	./.	./.
chr19	46341824	rs17850110	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,57:31:58:0.983:2	./.	0/1:45,27:31:72:0.375:2	./.	./.	./.	./.	./.
chr19	46345734	rs150307195	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,32:32:64:0.500:2	./.	./.	./.
chr19	46352122	rs2303014	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,13:29:24:0.542:2	0/1:3,186:31:189:0.984:2	./.	0/1:99,80:30:180:0.447:2	./.	./.	./.	./.	./.
chr19	46367703	rs11667582	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,8:30:9:0.889:2	./.	0/1:12,5:32:17:0.294:2	./.	./.	./.	./.	./.
chr19	46375779	rs16980091	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,19:32:38:0.500:2
chr19	46376217	rs3810327	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,24:32:63:0.381:2	0/1:49,19:32:68:0.279:2	0/1:30,19:32:49:0.388:2	./.
chr19	46387344	rs11550348	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,29:31:52:0.558:2	0/1:13,9:31:22:0.409:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	46387503	rs3745926	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,12:32:12:1.00:2	0/1:0,4:33:4:1.00:2	./.	0/1:12,16:33:28:0.571:2	./.	./.	./.	./.	./.	./.	./.
chr19	46388067	rs62111264	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,45:28:95:0.474:2	./.	./.	./.	./.	./.
chr19	46388379	rs3826892	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:12,12:29:24:0.500:2	0/1:8,4:29:12:0.333:2	./.	0/1:16,14:29:30:0.467:2	./.	./.	./.	./.	./.	./.	./.
chr19	46394187	rs62111265	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:29:7:0.429:2	./.	0/1:2,3:29:5:0.600:2	./.	./.	./.	./.	./.
chr19	46394322	rs114387602	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:31:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	46404543	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	46404579	rs10423899	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,12:33:12:1.00:2	0/1:0,9:30:9:1.00:2	./.	0/1:0,37:32:37:1.00:2	0/1:25,11:30:36:0.306:2	0/1:0,21:32:21:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,23:32:23:1.00:2	0/1:14,11:31:25:0.440:2	0/1:0,14:33:14:1.00:2
chr19	46443739	rs28742045	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,8:29:18:0.444:2	0/1:2,4:32:6:0.667:2	0/1:0,4:32:4:1.00:2	0/1:18,15:32:33:0.455:2	0/1:0,25:31:25:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,27:32:27:1.00:2	0/1:17,18:34:35:0.514:2	0/1:13,10:33:23:0.435:2	0/1:0,16:31:16:1.00:2
chr19	46443886	rs1047061	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.	0/1:0,7:31:7:1.00:2	./.	0/1:0,5:33:5:1.00:2	./.	0/1:4,3:30:7:0.429:2	0/1:0,2:31:2:1.00:2
chr19	46498353	rs892217	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:8,4:29:12:0.333:2	0/1:8,3:29:11:0.273:2	0/1:0,2:30:2:1.00:2	0/1:19,14:30:33:0.424:2	0/1:14,13:32:27:0.481:2	0/1:0,27:29:27:1.00:2	0/1:10,19:30:29:0.655:2	0/1:1,17:28:18:0.944:2	0/1:19,14:31:33:0.424:2	0/1:20,6:28:26:0.231:2	0/1:0,23:26:23:1.00:2
chr19	46511548	rs2287305	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,21:29:21:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,29:32:29:1.00:2
chr19	46518651	rs7895	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:23:4:1.00:2	./.	./.	./.
chr19	46518682	rs7271	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,5:32:7:0.714:2	./.	./.	./.
chr19	46520026	rs2287306	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:31:65:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,4:29:4:1.00:2	0/1:47,31:29:79:0.397:2	0/1:42,20:30:62:0.323:2	0/1:43,26:30:69:0.377:2	0/1:2,37:31:39:0.949:2	0/1:3,50:30:53:0.943:2	0/1:2,60:31:62:0.968:2	0/1:29,19:31:48:0.396:2	0/1:26,17:30:43:0.395:2
chr19	46543566	rs17271272	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,52:33:97:0.536:2	./.	./.	0/1:26,38:33:64:0.594:2
chr19	46627297	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,16:8:59:0.271:2	./.	./.	./.	./.	0/1:36,16:9:52:0.308:2	0/1:38,16:11:55:0.296:2
chr19	46627592	rs2287307	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:31:4:1.00:2	0/1:1,36:31:37:0.973:2	0/1:1,18:31:19:0.947:2	./.	0/1:15,15:27:30:0.500:2	0/1:41,12:31:53:0.226:2	0/1:32,16:32:48:0.333:2	0/1:32,15:32:47:0.319:2	0/1:0,54:31:54:1.00:2
chr19	46663956	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,15:31:46:0.326:2	./.
chr19	46664287	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,4:32:28:0.143:2	./.	./.	./.	./.
chr19	46664356	rs181673780	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,12:32:35:0.343:2	./.	./.	./.	./.	./.	./.	./.
chr19	46733409	rs75105417	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,48:33:94:0.516:2
chr19	46734064	rs200281405	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:31:136:0.029:2	./.	./.
chr19	46811984	rs2311054	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,14:30:14:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,18:27:18:1.00:2	0/1:0,14:26:14:1.00:2	0/1:0,21:28:21:1.00:2	0/1:10,7:29:17:0.412:2	0/1:0,18:25:18:1.00:2	0/1:0,20:28:20:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,16:26:16:1.00:2
chr19	46812451	rs61750957	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,40:31:73:0.548:2	0/1:40,29:31:69:0.420:2	0/1:43,27:31:70:0.386:2	./.	0/1:35,60:32:95:0.632:2	./.	./.	./.
chr19	46815499	rs8101480	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,39:28:40:0.975:2	0/1:0,36:28:36:1.00:2	0/1:0,6:27:6:1.00:2	0/1:34,42:29:76:0.553:2	0/1:0,109:28:109:1.00:2	0/1:0,65:28:66:1.00:2	0/1:0,104:28:104:1.00:2	0/1:1,122:28:124:0.992:2	0/1:0,88:29:88:1.00:2	0/1:0,53:27:53:1.00:2	0/1:0,76:28:76:1.00:2
chr19	46823702	rs3764609	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,24:30:51:0.471:2	./.	0/1:28,19:30:47:0.404:2	./.	0/1:8,12:30:20:0.600:2	./.	./.
chr19	46823751	rs3764610	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,37:30:75:0.493:2	./.	0/1:33,29:31:62:0.468:2	./.	0/1:9,11:30:20:0.550:2	./.	./.
chr19	46825067	rs61750958	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,23:28:44:0.523:2	./.	./.	./.	./.	./.
chr19	46832715	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,3:33:33:0.091:2	./.
chr19	46850414	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:30:47:0.085:2	./.
chr19	46857015	rs917948	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:49,45:32:94:0.479:2	0/1:25,26:32:51:0.510:2	0/1:11,10:32:21:0.476:2	./.	0/1:83,85:31:168:0.506:2	./.	./.	./.	./.	0/1:52,46:32:98:0.469:2	./.
chr19	46878881	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,10:28:200:0.050:2	./.	./.	0/1:116,9:30:125:0.072:2	./.
chr19	46878989	rs4239538	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:36,32:31:68:0.471:2	0/1:34,19:31:53:0.358:2	./.	0/1:75,50:31:125:0.400:2	./.	0/1:3,115:30:118:0.975:2	0/1:93,64:31:157:0.408:2	0/1:7,123:31:130:0.946:2	./.	0/1:71,31:30:102:0.304:2	0/1:65,54:31:119:0.454:2
chr19	46891967	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,7:31:109:0.064:2	./.	./.	./.	./.
chr19	46914547	rs2279517	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:32:13:0.538:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	46914921	rs34186470	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,8:31:18:0.444:2	./.	./.	./.	./.	./.	./.
chr19	46915114	rs143086771	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,48:32:98:0.490:2	./.	0/1:65,35:32:100:0.350:2	./.
chr19	46915702	rs35262679	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,21:31:68:0.309:2	./.	0/1:0,22:33:22:1.00:2	./.
chr19	46916582	rs4802310	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,78:32:80:0.975:2	0/1:1,41:32:42:0.976:2	0/1:5,9:33:14:0.643:2	0/1:0,107:32:107:1.00:2	./.	0/1:63,38:32:101:0.376:2	0/1:2,26:32:28:0.929:2	0/1:70,24:32:95:0.255:2	./.	./.	0/1:38,15:32:53:0.283:2
chr19	46971773	rs45575940	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,63:30:127:0.496:2	./.	0/1:0,88:29:88:1.00:2	0/1:79,76:29:155:0.490:2
chr19	46973707	rs111356009	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,13:32:27:0.481:2	./.	./.	./.	./.
chr19	46973981	rs4803960	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,4:32:13:0.308:2	./.	0/1:6,20:34:26:0.769:2	./.	./.
chr19	46974233	rs3826851	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,38:30:69:0.551:2	./.	0/1:20,24:31:44:0.545:2	./.	./.
chr19	46996928	rs4803966	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.
chr19	46997149	rs201060790	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,4:33:22:0.182:2	./.	./.	./.
chr19	46997522	rs3745790	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,21:29:36:0.583:2	./.	./.	./.	./.	./.	0/1:9,12:30:21:0.571:2
chr19	46998236	rs4803967	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,13:33:31:0.419:2	./.	./.
chr19	47124714	rs2229129	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:37,21:28:58:0.362:2	0/1:27,11:29:38:0.289:2	./.	0/1:0,54:29:54:1.00:2	./.	0/1:37,19:29:56:0.339:2	0/1:28,14:27:42:0.333:2	./.	./.	0/1:34,14:28:48:0.292:2	./.
chr19	47127324	rs2229128	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:35:2:1.00:2	./.	./.	./.	./.	./.
chr19	47137383	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,40:34:113:0.354:2	./.	./.
chr19	47137459	rs12974613	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,30:29:48:0.625:2	0/1:12,11:29:23:0.478:2	./.	./.	0/1:29,38:26:67:0.567:2	0/1:27,31:26:58:0.534:2	0/1:21,23:28:44:0.523:2	0/1:26,48:27:74:0.649:2	./.	0/1:19,26:28:45:0.578:2	0/1:0,41:28:41:1.00:2
chr19	47177913	rs314665	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:29:38:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,29:29:29:1.00:2	0/1:0,19:28:19:1.00:2
chr19	47223949	rs313841	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,24:32:42:0.571:2	./.	./.	0/1:104,90:32:194:0.464:2	./.	./.	./.	./.	./.
chr19	47226391	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:29:41:0.100:2	./.	./.	./.
chr19	47228126	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,3:32:40:0.075:2	./.
chr19	47240167	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,8:24:68:0.118:2	./.
chr19	47258842	rs2287717	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,21:31:34:0.618:2	./.	./.	./.	./.	./.
chr19	47259134	rs148206382	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr19	47260493	rs73060707	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,39:31:68:0.574:2	./.	./.	./.	./.	./.	./.	./.
chr19	47278859	rs3027961	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,32:32:73:0.438:2	0/1:39,37:32:76:0.487:2	0/1:40,32:32:72:0.444:2	0/1:47,36:31:83:0.434:2	./.	./.	./.	./.
chr19	47278938	rs1060043	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,74:31:148:0.500:2	./.	./.	./.
chr19	47282162	rs2070246	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,17:30:47:0.362:2	0/1:22,17:30:39:0.436:2	0/1:8,4:32:12:0.333:2	0/1:70,34:31:104:0.327:2	0/1:65,39:30:104:0.375:2	./.	0/1:58,45:31:103:0.437:2	./.	0/1:35,30:32:65:0.462:2	0/1:29,21:31:50:0.420:2	0/1:32,34:31:66:0.515:2
chr19	47287405	rs3027958	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,50:32:111:0.450:2	0/1:76,50:32:126:0.397:2	0/1:58,60:32:118:0.508:2	0/1:72,56:31:128:0.438:2	./.	./.	./.	./.
chr19	47291174	rs3027956	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	0/1:12,9:31:21:0.429:2	./.	0/1:15,6:29:21:0.286:2	0/1:8,8:31:16:0.500:2
chr19	47425424	rs147079247	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,36:31:70:0.514:2	./.	./.	./.	./.	./.	./.
chr19	47542354	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:31:81:0.049:2	./.	./.	./.	./.	./.
chr19	47543774	rs3745615	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,108:32:108:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,17:31:17:1.00:2	./.	0/1:67,61:31:128:0.477:2	0/1:74,57:30:131:0.435:2	0/1:0,94:31:94:1.00:2	0/1:2,134:31:136:0.985:2	0/1:77,51:32:128:0.398:2	0/1:0,106:32:106:1.00:2	0/1:0,120:31:120:1.00:2
chr19	47548678	rs889169	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:29:10:1.00:2	0/1:0,7:27:7:1.00:2	./.	./.	0/1:1,3:28:4:0.750:2	./.	0/1:0,6:28:6:1.00:2	0/1:1,4:29:5:0.800:2	./.	0/1:0,7:29:7:1.00:2	0/1:0,9:27:9:1.00:2
chr19	47570343	rs141514527	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,14:26:23:0.609:2	0/1:5,12:32:17:0.706:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	47585517	rs7250850	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,172:33:174:0.989:2	0/1:1,100:32:101:0.990:2	0/1:21,20:33:41:0.488:2	./.	0/1:107,69:32:176:0.392:2	0/1:88,92:33:180:0.511:2	0/1:3,166:33:169:0.982:2	0/1:5,165:33:170:0.971:2	0/1:91,84:34:175:0.480:2	0/1:1,173:33:174:0.994:2	0/1:0,167:33:168:1.00:2
chr19	47588325	rs2287842	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,21:31:38:0.553:2	./.	./.	0/1:108,86:31:194:0.443:2	0/1:1,193:32:194:0.995:2	0/1:117,77:32:194:0.397:2	./.	0/1:99,93:32:192:0.484:2	0/1:0,161:32:161:1.00:2
chr19	47700611	rs11083864	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,80:31:138:0.580:2	./.	./.	0/1:95,82:32:178:0.463:2	./.	./.
chr19	47729819	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,11:11:47:0.244:2	./.	./.	./.	./.	./.
chr19	47761646	rs12985905	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:32:39:1.00:2	0/1:1,13:32:14:0.929:2	0/1:0,6:31:6:1.00:2	0/1:0,37:32:37:1.00:2	0/1:17,18:32:35:0.514:2	0/1:0,40:31:40:1.00:2	0/1:0,32:31:32:1.00:2	0/1:30,28:31:58:0.483:2	0/1:0,57:33:57:1.00:2	0/1:18,14:33:32:0.438:2	0/1:0,61:32:61:1.00:2
chr19	47764017	rs143218686	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,20:29:26:0.769:2
chr19	47770015	rs10413121	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,42:30:99:0.424:2	./.	./.	0/1:1,36:28:37:0.973:2	./.	./.	0/1:46,23:29:69:0.333:2	0/1:24,17:28:41:0.415:2
chr19	47773647	rs73061366	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,111:33:112:0.991:2	./.	./.	0/1:40,36:32:76:0.474:2	./.
chr19	47773728	rs118041406	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,41:31:102:0.402:2	./.	./.	./.	./.
chr19	47774572	rs60930438	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,7:30:33:0.212:2	./.	./.	0/1:0,25:31:25:1.00:2	./.	./.	0/1:20,10:31:30:0.333:2	0/1:12,16:31:28:0.571:2
chr19	47774772	rs888836	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:32:13:0.385:2	./.	./.	0/1:0,9:30:9:1.00:2	./.	./.	0/1:3,7:31:10:0.700:2	./.
chr19	47778857	rs6612	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,8:30:15:0.533:2	0/1:104,74:29:178:0.416:2	./.	./.	./.	./.	./.	./.	0/1:72,41:27:113:0.363:2
chr19	47813165	rs11670330	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,62:32:142:0.437:2
chr19	47823038	rs4467185	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:30:68:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,99:30:99:1.00:2	0/1:0,54:29:54:1.00:2	0/1:0,94:30:94:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,76:30:76:1.00:2	0/1:0,97:30:97:1.00:2
chr19	47823484	rs4804049	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:28:61:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,86:29:86:1.00:2	0/1:0,81:27:81:1.00:2	0/1:0,94:28:94:1.00:2	0/1:0,76:28:76:1.00:2	0/1:0,61:28:61:1.00:2	0/1:0,64:29:64:1.00:2	0/1:0,54:28:54:1.00:2	0/1:0,49:27:49:1.00:2
chr19	47823871	rs11880097	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,153:31:153:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,146:30:146:1.00:2	0/1:1,160:30:161:0.994:2	0/1:0,150:30:150:1.00:2	0/1:0,189:30:189:1.00:2	0/1:0,191:30:191:1.00:2	0/1:1,173:31:174:0.994:2	0/1:0,149:31:149:1.00:2	0/1:0,145:31:145:1.00:2
chr19	47845187	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,36:29:99:0.364:2
chr19	47856336	rs12984558	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:34:5:0.800:2	./.	./.	./.	./.	0/1:30,29:32:59:0.492:2	./.	./.	./.
chr19	47856569	rs143813328	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,39:32:107:0.364:2	./.	./.	0/1:53,33:33:86:0.384:2	./.
chr19	47856637	rs8113564	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,49:30:115:0.430:2	./.	./.	./.	./.	./.	./.	./.
chr19	47858424	rs2245046	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,41:31:92:0.451:2	./.	./.	./.	./.	./.	./.	./.
chr19	47858454	rs113972066	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,53:32:110:0.482:2
chr19	47858489	rs34802163	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,55:29:118:0.474:2
chr19	47865911	rs2547390	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,31:30:47:0.660:2	./.	./.	./.	./.	./.	./.	./.
chr19	47870285	rs372352490	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,5:28:108:0.046:2	0/1:102,8:22:112:0.073:2	./.	./.	0/1:122,11:26:133:0.083:2	./.	0/1:81,9:25:91:0.100:2	./.
chr19	47870310	rs200731942	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:133,5:34:139:0.036:2	0/1:138,9:32:147:0.061:2	./.	./.	0/1:166,12:32:178:0.067:2	./.	0/1:94,9:30:103:0.087:2	./.
chr19	47870318	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,42:31:118:0.356:2	0/1:37,27:31:64:0.422:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	47879279	rs2694558	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,18:30:30:0.600:2	./.	./.	./.	./.	./.	./.	./.
chr19	47883086	rs28522883	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,21:30:38:0.553:2	0/1:11,8:30:19:0.421:2	./.	./.	./.	0/1:9,13:29:22:0.591:2	0/1:12,6:29:18:0.333:2	./.	./.	./.	./.
chr19	47912480	rs202205840	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,21:30:41:0.512:2	./.	./.	./.	./.	./.	./.	./.
chr19	47935572	rs7259674	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,39:31:88:0.448:2	./.	./.	./.	./.	./.	./.
chr19	47969394	rs12459087	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:60,49:32:110:0.450:2	0/1:39,33:32:72:0.458:2	0/1:10,17:31:27:0.630:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	47978671	rs2272295	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,12:28:25:0.480:2	./.	./.	0/1:26,16:27:42:0.381:2	./.	./.	0/1:11,9:27:20:0.450:2	./.
chr19	47980153	rs2293424	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,23:32:47:0.489:2	0/1:10,13:32:23:0.565:2	./.	./.	0/1:55,46:32:101:0.455:2	0/1:0,56:31:56:1.00:2	0/1:37,32:32:69:0.464:2	0/1:0,75:32:75:1.00:2	0/1:0,57:33:57:1.00:2	./.	0/1:28,27:32:55:0.491:2
chr19	47984028	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:32:61:0.066:2	./.	./.	./.	./.
chr19	47984236	rs61743291	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,25:32:51:0.490:2	0/1:37,24:32:61:0.393:2	./.	./.	0/1:28,17:32:45:0.378:2	./.
chr19	48036156	rs185255795	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,40:31:86:0.465:2	./.	./.	./.	./.	./.	./.	./.
chr19	48042976	rs12972658	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,11:30:34:0.324:2	./.	./.	0/1:18,9:32:27:0.333:2	./.
chr19	48043008	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,4:32:26:0.154:2	./.
chr19	48047729	rs143702897	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,25:30:60:0.417:2	0/1:18,12:32:30:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	48047821	rs3826836	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,19:30:43:0.442:2	./.	./.	0/1:17,15:30:32:0.469:2	./.
chr19	48047841	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,19:30:46:0.413:2	./.	./.
chr19	48048515	rs56162770	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,4:34:14:0.286:2	./.	./.	0/1:6,11:34:17:0.647:2	./.
chr19	48058953	rs144244907	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,42:32:88:0.477:2
chr19	48182787	rs4802382	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,11:30:17:0.647:2	./.	./.	0/1:2,30:33:32:0.938:2	./.	0/1:1,11:34:12:0.917:2
chr19	48182946	rs2911006	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:29:4:0.750:2	./.	./.	./.	0/1:0,4:31:4:1.00:2	0/1:5,3:34:8:0.375:2	./.	0/1:3,4:33:7:0.571:2	0/1:0,3:32:3:1.00:2	./.	./.
chr19	48183771	rs1035938	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,5:31:10:0.500:2	./.	./.	0/1:0,11:31:11:1.00:2	./.	0/1:0,3:29:3:1.00:2
chr19	48184474	rs3745762	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	./.
chr19	48198675	rs13346368	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,13:32:27:0.500:2	./.	./.	0/1:0,31:32:31:1.00:2	./.	0/1:0,26:30:26:1.00:2
chr19	48202616	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:31:54:0.074:2	./.	./.
chr19	48219929	rs61746407	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:31:8:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr19	48229169	rs8111184	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,17:32:42:0.405:2	0/1:18,15:30:33:0.455:2
chr19	48244194	rs7255434	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,12:32:40:0.300:2	0/1:14,10:32:24:0.417:2	0/1:0,8:30:8:1.00:2	0/1:20,26:34:46:0.565:2	0/1:45,34:32:79:0.430:2	0/1:0,42:33:42:1.00:2	0/1:1,51:33:52:0.981:2	./.	0/1:25,21:32:46:0.457:2	0/1:1,47:33:48:0.979:2	0/1:12,10:33:22:0.455:2
chr19	48244401	rs35910701	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:3,4:32:7:0.571:2	./.	0/1:10,16:31:26:0.615:2	0/1:16,15:29:31:0.484:2	./.	./.	0/1:0,32:30:32:1.00:2	./.	./.	./.
chr19	48244569	rs3745758	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:8,16:32:24:0.667:2	0/1:10,14:33:24:0.583:2	0/1:0,4:32:4:1.00:2	0/1:22,27:31:49:0.551:2	0/1:24,30:32:54:0.556:2	0/1:0,58:31:58:1.00:2	0/1:0,28:32:28:1.00:2	./.	0/1:21,21:33:42:0.500:2	0/1:18,17:32:35:0.486:2	./.
chr19	48248834	rs10404034	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,31:27:78:0.397:2	0/1:33,46:28:80:0.582:2
chr19	48248902	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:30:62:0.065:2	./.	./.	./.	./.	./.
chr19	48248924	rs3181870	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,26:31:42:0.619:2	./.	./.	./.	./.	./.
chr19	48248925	rs144346550	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,26:32:42:0.619:2	./.	./.	./.	./.	./.
chr19	48255804	rs1042558	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:7,5:26:13:0.417:2	./.	0/1:0,3:24:3:1.00:2	./.	./.	0/1:0,4:26:4:1.00:2	0/1:0,9:23:9:1.00:2	./.	0/1:6,5:26:12:0.455:2	./.	./.
chr19	48258772	rs11083895	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:25:6:0.667:2	0/1:0,2:29:2:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.	0/1:0,3:32:3:1.00:2	./.
chr19	48282078	rs28693580	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:16,6:30:22:0.273:2	./.	0/1:0,5:30:5:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	48305555	rs147380237	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,4:33:22:0.182:2	./.	./.	./.
chr19	48305586	rs145255760	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,10:32:31:0.323:2	./.	./.	0/1:10,3:29:14:0.231:2
chr19	48305602	rs147608412	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,15:31:34:0.441:2	./.	./.	0/1:10,5:31:15:0.333:2
chr19	48305626	rs62130757	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,3:29:15:0.200:2	./.	./.	./.	0/1:11,8:29:19:0.421:2
chr19	48305651	rs62130758	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,17:31:23:0.739:2	./.	./.	./.	./.	0/1:20,10:33:30:0.333:2	0/1:13,11:32:24:0.458:2
chr19	48305654	rs73036913	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,17:30:35:0.486:2	./.	./.	0/1:13,9:29:23:0.409:2
chr19	48305674	rs78381908	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,10:30:21:0.476:2
chr19	48389425	rs11083907	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,121:29:121:1.00:2	0/1:0,72:29:72:1.00:2	0/1:0,13:29:13:1.00:2	0/1:0,158:30:158:1.00:2	0/1:1,95:28:96:0.990:2	0/1:0,137:29:137:1.00:2	0/1:0,140:29:141:1.00:2	0/1:0,155:29:155:1.00:2	0/1:1,155:31:156:0.994:2	0/1:0,118:30:118:1.00:2	0/1:1,184:29:185:0.995:2
chr19	48484150	rs10422554	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,32:33:55:0.582:2	0/1:10,4:31:14:0.286:2	0/1:4,3:32:7:0.429:2	0/1:37,26:32:63:0.413:2	0/1:34,11:32:45:0.244:2	0/1:47,26:31:73:0.356:2	./.	0/1:38,13:32:51:0.255:2	./.	./.	./.
chr19	48484188	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,3:35:53:0.057:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	48495304	rs60213124	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,22:31:50:0.440:2	0/1:47,35:31:82:0.427:2	./.	./.	./.	./.	./.
chr19	48512010	rs34842242	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,20:31:40:0.500:2	0/1:36,24:31:60:0.400:2	./.	./.	0/1:40,28:33:69:0.412:2	0/1:25,17:31:42:0.405:2	./.
chr19	48517538	rs62129078	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,78:32:138:0.565:2	./.	./.	0/1:70,79:33:149:0.530:2	0/1:54,47:33:101:0.465:2	./.
chr19	48519158	rs34129198	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,46:31:85:0.541:2	./.	0/1:116,4:33:120:0.033:2	0/1:64,40:32:104:0.385:2	0/1:32,28:32:60:0.467:2	./.
chr19	48519205	rs34647554	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,43:30:74:0.581:2	./.	./.	0/1:75,28:30:103:0.272:2	0/1:35,27:31:62:0.435:2	./.
chr19	48519241	rs3745751	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,51:32:100:0.510:2	0/1:33,28:32:61:0.459:2	0/1:9,3:32:12:0.250:2	0/1:55,38:31:94:0.409:2	./.	./.	./.	./.	./.	./.	./.
chr19	48519244	rs35792818	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,55:30:102:0.539:2	./.	./.	0/1:66,44:30:110:0.400:2	0/1:48,41:29:90:0.461:2	./.
chr19	48523128	rs35362679	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,14:30:30:0.467:2	0/1:9,7:32:16:0.438:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	48525466	rs35700000	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,63:32:140:0.450:2	./.	./.	./.	./.	./.
chr19	48525507	rs2303690	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,135:32:135:1.00:2	0/1:1,89:31:90:0.989:2	0/1:0,18:31:18:1.00:2	0/1:2,155:32:157:0.987:2	0/1:73,54:31:127:0.425:2	./.	0/1:0,132:32:132:1.00:2	0/1:102,68:31:170:0.400:2	./.	./.	0/1:93,74:31:167:0.443:2
chr19	48533856	rs35063174	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,4:29:15:0.267:2	0/1:5,11:32:16:0.688:2	0/1:1,12:31:13:0.923:2	0/1:14,6:32:20:0.300:2	0/1:0,14:32:14:1.00:2	./.	0/1:12,10:31:22:0.455:2
chr19	48537585	rs3745746	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,31:30:32:0.969:2	0/1:23,17:30:40:0.425:2	0/1:2,29:30:31:0.935:2	0/1:0,35:29:35:1.00:2	0/1:0,43:31:43:1.00:2	./.	0/1:27,10:32:37:0.270:2
chr19	48543862	rs8105198	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:33:55:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,9:33:9:1.00:2	0/1:35,29:32:64:0.453:2	0/1:35,21:32:56:0.375:2	0/1:1,63:32:64:0.984:2	0/1:0,49:32:49:1.00:2	0/1:43,36:32:79:0.456:2	0/1:0,39:33:39:1.00:2	0/1:1,65:32:66:0.985:2	0/1:0,68:33:68:1.00:2
chr19	48543906	rs34862923	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,44:33:80:0.550:2	./.	./.	0/1:55,55:33:110:0.500:2	./.	./.	./.
chr19	48543923	rs12982629	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,38:31:89:0.427:2	0/1:54,38:31:92:0.413:2	0/1:1,54:31:55:0.982:2	0/1:61,47:31:108:0.435:2	0/1:0,75:33:75:1.00:2	./.	0/1:54,44:32:98:0.449:2
chr19	48544837	rs35535557	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,86:32:188:0.457:2	./.	./.	0/1:95,80:31:176:0.457:2	./.	./.	./.
chr19	48558286	rs2307281	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,10:30:30:0.333:2	./.	0/1:35,25:30:60:0.417:2	0/1:28,32:30:60:0.533:2	./.	./.	0/1:0,68:31:68:1.00:2
chr19	48598823	rs156631	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:32:7:1.00:2	0/1:22,31:32:53:0.585:2	0/1:13,23:32:36:0.639:2	0/1:25,35:33:60:0.583:2	./.	./.	0/1:14,26:34:40:0.650:2	./.	0/1:34,20:32:54:0.370:2
chr19	48601454	rs251684	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,38:28:92:0.413:2	0/1:39,41:29:80:0.513:2	0/1:0,13:29:13:1.00:2	0/1:93,51:29:144:0.354:2	0/1:0,116:29:116:1.00:2	0/1:0,131:29:131:1.00:2	0/1:74,44:29:119:0.373:2	./.	0/1:0,132:30:132:1.00:2	0/1:67,55:30:122:0.451:2	./.
chr19	48601512	rs11564538	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,42:33:80:0.525:2	./.	./.
chr19	48602948	rs2303744	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,32:32:60:0.542:2	0/1:14,20:32:34:0.588:2	0/1:36,38:32:74:0.514:2	./.	./.	./.	./.	./.
chr19	48608598	rs2307279	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,33:32:78:0.423:2	./.	./.	./.	./.	./.	./.	./.
chr19	48613763	rs138105821	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,7:32:8:0.875:2	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	48613788	rs138501838	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	48621036	rs13436	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,108:32:108:1.00:2	0/1:1,59:32:60:0.983:2	0/1:7,11:33:18:0.611:2	./.	0/1:0,125:32:125:1.00:2	0/1:74,68:32:142:0.479:2	0/1:0,146:33:146:1.00:2	./.	0/1:59,61:32:120:0.508:2	0/1:51,67:33:118:0.568:2	0/1:44,38:32:82:0.463:2
chr19	48622375	rs3729512	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,39:29:77:0.520:2	./.	./.	./.	./.	./.	./.	./.
chr19	48622427	rs20581	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:29:42:1.00:2	0/1:0,33:28:33:1.00:2	0/1:6,7:29:13:0.538:2	0/1:47,42:30:89:0.472:2	0/1:0,120:29:120:1.00:2	0/1:59,56:29:116:0.487:2	0/1:0,112:29:112:1.00:2	./.	0/1:43,45:29:88:0.511:2	0/1:43,40:29:83:0.482:2	0/1:30,37:28:67:0.552:2
chr19	48654553	rs20580	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,16:31:41:0.390:2	0/1:19,10:32:29:0.345:2	./.	0/1:22,24:30:46:0.522:2	0/1:0,31:30:31:1.00:2	0/1:26,14:32:40:0.350:2	0/1:0,42:31:42:1.00:2	./.	0/1:31,13:32:44:0.295:2	0/1:33,13:32:46:0.283:2	0/1:28,18:32:46:0.391:2
chr19	48668795	rs3730849	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:24,20:33:44:0.455:2	0/1:22,11:32:33:0.333:2	0/1:5,3:32:8:0.375:2	./.	0/1:0,51:31:51:1.00:2	0/1:33,49:30:84:0.598:2	0/1:0,62:32:62:1.00:2	./.	0/1:23,26:32:49:0.531:2	0/1:46,29:32:75:0.387:2	0/1:30,36:32:66:0.545:2
chr19	48668830	rs20579	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,42:32:82:0.512:2	./.	./.	./.	./.	./.	./.	./.
chr19	48715153	rs3745718	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,6:33:13:0.462:2	0/1:103,64:33:167:0.383:2	./.	0/1:91,77:32:168:0.458:2	0/1:68,73:33:141:0.518:2	0/1:88,63:32:152:0.417:2	./.	0/1:74,65:33:139:0.468:2	./.
chr19	48715196	rs34632751	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,49:28:126:0.389:2
chr19	48722180	rs10500299	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,43:31:98:0.439:2	./.	./.	0/1:26,20:32:46:0.435:2	0/1:62,37:32:99:0.374:2	./.	0/1:37,26:32:63:0.413:2	./.
chr19	48733756	rs73573000	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,101:29:184:0.549:2	./.	./.	./.	./.	./.	./.	./.
chr19	48733863	rs59334088	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,32:29:70:0.457:2	./.	./.	./.	./.	./.	./.	./.
chr19	48733928	rs201339858	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,15:31:49:0.306:2	0/1:14,7:33:21:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	48734195	rs59878320	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,43:30:73:0.589:2	./.	./.	./.	./.	./.	./.	./.
chr19	48734925	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:32:77:0.052:2	./.	./.	./.	./.	./.
chr19	48734942	rs11881179	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,30:31:67:0.448:2	./.	./.	./.	./.	./.	./.	./.
chr19	48737706	rs2043211	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,26:31:62:0.419:2	0/1:13,11:31:24:0.458:2	0/1:4,3:32:7:0.429:2	0/1:42,38:32:80:0.475:2	0/1:40,38:32:78:0.487:2	0/1:56,36:31:92:0.391:2	0/1:51,32:32:83:0.386:2	./.	0/1:42,40:33:82:0.488:2	0/1:31,31:31:62:0.500:2	0/1:0,110:32:110:1.00:2
chr19	48800338	rs7252988	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:29:7:0.429:2	0/1:25,23:28:48:0.479:2	0/1:29,21:27:50:0.420:2	0/1:30,15:27:45:0.333:2	0/1:37,10:27:47:0.213:2	./.	0/1:15,25:29:40:0.625:2	0/1:26,22:28:48:0.458:2	0/1:1,22:27:23:0.957:2
chr19	48800914	rs35461177	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:31:10:0.500:2	0/1:0,54:33:54:1.00:2	./.	0/1:18,29:32:47:0.617:2	0/1:22,22:33:44:0.500:2	./.	./.	0/1:22,19:33:42:0.463:2	./.
chr19	48806015	rs34540645	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,34:33:94:0.362:2	./.	./.	./.	./.	./.
chr19	48806977	rs2242463	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,54:30:121:0.450:2	./.	./.	./.	0/1:63,43:31:108:0.406:2	./.	0/1:53,36:31:89:0.404:2
chr19	48807039	rs73942222	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,50:32:91:0.549:2	./.	./.	./.	./.	./.	./.	./.
chr19	48807367	rs28582401	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,15:30:44:0.341:2	./.	./.	./.	0/1:17,21:32:38:0.553:2	./.	0/1:17,14:31:31:0.452:2
chr19	48814878	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,39:32:105:0.375:2	./.	./.
chr19	48821757	rs16981988	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:20,19:32:39:0.487:2	0/1:17,9:31:26:0.346:2	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	0/1:32,32:31:64:0.500:2	./.	./.
chr19	48833728	rs11671746	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,10:26:14:0.714:2	./.	0/1:5,4:26:9:0.444:2
chr19	48836673	rs3826828	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,6:31:7:0.857:2	0/1:0,22:31:22:1.00:2	./.	0/1:13,14:33:27:0.519:2	0/1:8,15:32:23:0.652:2	./.	./.	0/1:4,13:32:17:0.765:2	0/1:10,14:32:24:0.583:2
chr19	48846646	rs11672365	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,26:31:46:0.565:2	./.	./.	./.	./.	./.	./.
chr19	48863386	rs438767	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,14:32:30:0.467:2	0/1:7,3:31:10:0.300:2	./.	0/1:14,17:32:31:0.548:2	0/1:18,11:31:29:0.379:2	0/1:0,38:32:38:1.00:2	0/1:1,41:32:42:0.976:2	0/1:0,45:32:45:1.00:2	./.	0/1:0,30:32:30:1.00:2	0/1:20,21:33:41:0.512:2
chr19	48867188	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:33:127:0.031:2	./.	./.	./.
chr19	48869178	rs919804	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,9:32:25:0.360:2	./.	./.	./.	./.	./.	./.	./.
chr19	48922550	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:33:184:0.022:2	./.	./.	./.
chr19	48949286	rs1643487	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:30:30:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,68:29:68:1.00:2	0/1:2,96:29:99:0.980:2	0/1:0,64:30:65:1.00:2	0/1:32,36:29:68:0.529:2	0/1:35,45:30:80:0.563:2	0/1:0,60:31:60:1.00:2	0/1:1,50:29:51:0.980:2	0/1:1,61:29:62:0.984:2
chr19	48950010	rs140236860	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,22:33:38:0.579:2	./.	./.	./.	./.	./.
chr19	48954312	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,4:23:31:0.129:2	./.	./.	./.	./.
chr19	48954421	rs2302951	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:17,21:33:38:0.553:2	0/1:13,12:33:25:0.480:2	./.	./.	0/1:0,63:32:63:1.00:2	./.	0/1:45,38:32:83:0.458:2	./.	0/1:37,31:34:68:0.456:2	./.	./.
chr19	48968015	rs73050908	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.
chr19	48972805	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,12:15:62:0.194:2	./.	./.
chr19	49001241	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,9:28:23:0.391:2	./.	./.	./.	./.	./.
chr19	49001600	rs61745738	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	0/1:10,14:32:24:0.583:2	0/1:8,11:29:19:0.579:2	./.	0/1:16,12:32:28:0.429:2	./.	./.	./.
chr19	49004344	rs115496266	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,53:31:107:0.495:2	./.	./.	./.	./.	./.
chr19	49004551	rs55953841	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,11:29:34:0.324:2	./.	./.	./.	./.	./.	./.
chr19	49004605	rs200010155	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,6:31:21:0.286:2	./.	./.	./.	./.	./.
chr19	49006229	rs12462340	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,81:31:161:0.503:2	./.	./.	./.	./.	./.	./.
chr19	49012702	.	A	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:47,9:18:56:0.161:2	./.	./.	0/1:84,21:20:106:0.200:2	0/1:117,42:14:159:0.264:2	0/1:98,28:19:127:0.222:2	0/1:111,42:17:153:0.275:2	0/1:104,28:18:132:0.212:2	0/1:83,10:16:93:0.108:2	0/1:93,13:22:106:0.123:2	0/1:87,9:25:96:0.094:2
chr19	49079246	rs2544794	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,32:33:54:0.593:2	0/1:27,44:32:71:0.620:2
chr19	49096065	rs2302948	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:25:7:0.571:2	./.	0/1:0,62:30:62:1.00:2	0/1:26,21:31:47:0.447:2	0/1:35,31:30:66:0.470:2	./.	0/1:18,24:30:42:0.571:2	./.	0/1:19,30:31:49:0.612:2
chr19	49102399	rs1132054	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,9:30:13:0.692:2	./.	./.	0/1:7,11:28:18:0.611:2	0/1:10,6:31:16:0.375:2	0/1:6,8:32:14:0.571:2	0/1:0,14:31:14:1.00:2	0/1:5,3:32:8:0.375:2
chr19	49102513	rs1052131	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:33,34:30:67:0.507:2	0/1:17,12:32:29:0.414:2	./.	0/1:45,26:31:71:0.366:2	./.	./.	./.	./.	./.	./.	0/1:14,31:30:46:0.689:2
chr19	49102599	rs17842463	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,42:32:63:0.667:2	./.	./.	0/1:19,22:30:41:0.537:2	./.	./.	./.	./.
chr19	49116359	rs447802	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,10:33:34:0.294:2	0/1:8,4:29:13:0.333:2	./.	0/1:40,15:31:55:0.273:2	0/1:0,29:30:29:1.00:2	0/1:42,22:30:64:0.344:2	./.	0/1:40,19:31:59:0.322:2	0/1:25,14:28:39:0.359:2	./.	./.
chr19	49116438	rs376524	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,15:32:35:0.429:2	0/1:12,8:31:20:0.400:2	./.	0/1:41,15:31:56:0.268:2	0/1:0,56:32:56:1.00:2	0/1:57,34:31:91:0.374:2	./.	./.	0/1:35,23:31:58:0.397:2	./.	./.
chr19	49116555	rs368654	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,10:33:10:1.00:2	0/1:0,3:33:3:1.00:2	0/1:0,2:34:2:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,2:27:2:1.00:2	0/1:2,2:33:4:0.500:2	0/1:0,3:31:3:1.00:2	./.	0/1:0,3:34:3:1.00:2
chr19	49118651	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:23:7:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	49132048	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,19:30:57:0.333:2	./.	./.	./.	./.	./.	./.	./.
chr19	49132634	rs3745733	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,3:34:5:0.600:2	./.	./.	./.	./.	./.	./.
chr19	49132867	rs61751862	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:33:4:1.00:2	./.
chr19	49132937	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:30:124:0.032:2	./.	./.	./.
chr19	49134160	rs148306408	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,22:29:60:0.367:2
chr19	49167048	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:33:112:0.036:2
chr19	49168005	rs17851884	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:29:10:1.00:2	0/1:27,22:30:49:0.449:2	./.	./.	0/1:28,27:30:55:0.491:2	./.	./.	0/1:19,21:29:40:0.525:2	0/1:26,21:31:47:0.447:2
chr19	49206417	rs492602	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:21,8:30:29:0.276:2	0/1:8,10:30:18:0.556:2	./.	./.	./.	./.	0/1:16,16:30:32:0.500:2	0/1:18,23:31:41:0.561:2	./.	0/1:15,22:31:37:0.595:2	./.
chr19	49206462	rs681343	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:11,8:32:19:0.421:2	0/1:6,9:31:15:0.600:2	./.	./.	./.	./.	0/1:10,12:32:22:0.545:2	0/1:10,18:31:28:0.643:2	./.	0/1:8,14:30:22:0.636:2	./.
chr19	49206603	rs281377	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:31:3:1.00:2	0/1:28,27:30:55:0.491:2	./.	0/1:1,38:30:39:0.974:2	0/1:27,19:31:46:0.413:2	0/1:22,34:30:56:0.607:2	0/1:0,40:32:40:1.00:2	0/1:8,18:32:26:0.692:2	0/1:24,13:31:37:0.351:2
chr19	49206674	rs601338	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:8,3:28:11:0.273:2	0/1:6,7:31:13:0.538:2	./.	./.	./.	./.	0/1:14,18:32:32:0.563:2	0/1:25,16:30:41:0.390:2	./.	0/1:15,11:31:26:0.423:2	./.
chr19	49206726	rs1800027	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,19:30:33:0.576:2	./.	./.	./.
chr19	49206727	rs1800025	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,7:28:18:0.389:2	./.	./.	./.	./.	./.	./.
chr19	49206985	rs602662	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:67,53:33:120:0.442:2	0/1:34,41:32:75:0.547:2	./.	./.	./.	./.	0/1:107,88:32:195:0.451:2	0/1:97,99:32:196:0.505:2	./.	0/1:77,71:32:148:0.480:2	./.
chr19	49207206	rs485186	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:63,36:29:100:0.364:2	0/1:47,21:28:68:0.309:2	./.	./.	./.	./.	0/1:83,50:29:133:0.376:2	0/1:86,65:29:151:0.430:2	./.	0/1:58,48:29:106:0.453:2	./.
chr19	49207255	rs485073	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:80,41:28:121:0.339:2	0/1:56,29:27:85:0.341:2	./.	./.	./.	./.	0/1:116,70:28:186:0.376:2	0/1:110,70:28:180:0.389:2	./.	0/1:80,77:29:157:0.490:2	./.
chr19	49207257	rs603985	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:77,41:31:118:0.347:2	0/1:55,29:31:84:0.345:2	./.	./.	./.	./.	0/1:117,70:32:187:0.374:2	0/1:110,70:32:180:0.389:2	./.	0/1:78,77:32:155:0.497:2	./.
chr19	49207438	rs281376	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:33:39:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,51:33:51:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,40:33:40:1.00:2
chr19	49207554	rs571689	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:7,3:33:10:0.300:2	./.	./.	./.	./.	./.	0/1:3,4:29:7:0.571:2	./.	./.	0/1:1,3:31:4:0.750:2	./.
chr19	49207651	rs570794	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:4,9:32:13:0.692:2	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	0/1:2,5:31:7:0.714:2	0/1:6,12:33:18:0.667:2	./.	./.	./.
chr19	49207699	rs112479907	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,11:16:41:0.268:2	0/1:21,12:12:33:0.364:2	0/1:14,7:14:21:0.333:2	0/1:7,12:25:19:0.632:2	0/1:15,19:28:34:0.559:2	0/1:24,12:16:36:0.333:2	0/1:7,16:26:23:0.696:2	0/1:30,8:17:38:0.211:2
chr19	49207704	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,13:15:47:0.277:2	0/1:26,9:12:35:0.257:2	./.	./.	0/1:36,14:15:50:0.280:2	0/1:27,11:13:38:0.289:2	0/1:42,10:18:53:0.192:2
chr19	49207710	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,10:13:55:0.182:2	./.	./.	./.	0/1:52,11:16:63:0.175:2	./.	0/1:58,7:18:65:0.108:2
chr19	49207718	rs569970	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:35,39:29:75:0.527:2	0/1:16,18:28:34:0.529:2	./.	./.	./.	./.	0/1:38,38:30:76:0.500:2	0/1:41,38:29:80:0.481:2	./.	0/1:32,32:31:65:0.500:2	./.
chr19	49207792	rs2251034	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:86,94:32:180:0.522:2	0/1:50,47:33:97:0.485:2	./.	./.	./.	./.	0/1:105,89:32:194:0.459:2	0/1:97,96:32:193:0.497:2	./.	0/1:99,93:33:192:0.484:2	./.
chr19	49208368	rs2432132	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:23:5:0.600:2	./.	./.	0/1:4,4:25:8:0.500:2	./.
chr19	49208501	rs507855	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:35:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	49208543	rs507766	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:5,3:30:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.
chr19	49208564	rs507711	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:7,3:30:10:0.300:2	./.	./.	./.	./.	./.	0/1:8,4:29:12:0.333:2	0/1:9,3:29:12:0.250:2	./.	0/1:3,6:32:9:0.667:2	./.
chr19	49208629	rs506897	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:20,11:31:31:0.355:2	0/1:10,12:31:22:0.545:2	./.	./.	./.	./.	0/1:24,19:32:43:0.442:2	0/1:24,28:32:52:0.538:2	./.	0/1:21,20:32:41:0.488:2	./.
chr19	49208865	rs504963	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:53,28:32:82:0.346:2	0/1:32,33:32:65:0.508:2	./.	./.	./.	./.	0/1:89,42:32:131:0.321:2	0/1:71,56:31:127:0.441:2	./.	0/1:76,51:31:127:0.402:2	./.
chr19	49208978	rs632111	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:55,25:33:81:0.313:2	0/1:35,19:33:54:0.352:2	./.	./.	./.	./.	0/1:63,26:33:89:0.292:2	0/1:58,49:33:107:0.458:2	./.	0/1:50,34:33:84:0.405:2	./.
chr19	49209010	rs503279	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:52,25:32:77:0.325:2	0/1:30,18:32:48:0.375:2	./.	./.	./.	./.	0/1:58,25:32:83:0.301:2	0/1:60,55:32:115:0.478:2	./.	0/1:53,36:33:89:0.404:2	./.
chr19	49209012	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:112,5:26:117:0.043:2	./.	./.	./.	./.	./.	./.
chr19	49217261	rs281385	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,16:29:30:0.533:2	0/1:9,10:30:19:0.526:2	0/1:0,6:28:6:1.00:2	0/1:19,10:30:29:0.345:2	./.	0/1:0,38:29:38:1.00:2	0/1:0,22:29:22:1.00:2	0/1:23,17:29:40:0.425:2	0/1:0,28:30:28:1.00:2	0/1:0,29:29:29:1.00:2	0/1:16,5:24:21:0.238:2
chr19	49218111	rs33988101	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:28,23:30:51:0.451:2	0/1:13,8:31:22:0.381:2	0/1:2,7:30:9:0.778:2	./.	./.	./.	0/1:0,91:30:91:1.00:2	0/1:58,57:30:115:0.496:2	./.	0/1:38,52:30:90:0.578:2	./.
chr19	49218602	rs12979278	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:10,21:31:31:0.677:2	0/1:5,8:31:13:0.615:2	0/1:0,3:32:3:1.00:2	./.	./.	./.	0/1:1,30:30:31:0.968:2	0/1:12,19:30:31:0.613:2	./.	0/1:7,14:33:21:0.667:2	./.
chr19	49230379	rs640794	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,19:29:57:0.333:2	./.	./.	./.	./.	./.	./.
chr19	49244206	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:34:89:0.045:2	./.	./.
chr19	49244219	rs2307018	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,5:31:8:0.625:2	0/1:51,34:31:85:0.400:2	./.	0/1:0,80:31:80:1.00:2	./.	0/1:63,38:31:101:0.376:2	0/1:0,76:32:76:1.00:2	0/1:44,32:31:76:0.421:2	0/1:58,47:32:105:0.448:2
chr19	49244220	rs2307019	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,5:31:8:0.625:2	0/1:52,34:31:86:0.395:2	./.	0/1:0,80:30:80:1.00:2	./.	0/1:63,38:30:101:0.376:2	0/1:0,76:31:76:1.00:2	0/1:44,31:30:76:0.413:2	0/1:58,47:31:105:0.448:2
chr19	49247786	rs8108468	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:33:3:0.667:2	0/1:28,23:31:51:0.451:2	./.	0/1:0,49:31:49:1.00:2	./.	0/1:55,34:32:89:0.382:2	0/1:0,73:33:73:1.00:2	0/1:37,17:33:54:0.315:2	0/1:36,32:32:68:0.471:2
chr19	49253694	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,4:32:109:0.037:2	./.	./.	./.	./.	./.	./.	./.
chr19	49254504	rs2071699	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,58:31:174:0.333:2	./.	./.
chr19	49259529	rs838133	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,43:32:99:0.434:2	0/1:19,23:32:42:0.548:2	0/1:9,8:32:17:0.471:2	0/1:1,156:32:157:0.994:2	0/1:0,146:31:146:1.00:2	0/1:0,114:32:114:1.00:2	./.	0/1:105,89:32:194:0.459:2	0/1:2,107:33:109:0.982:2	0/1:58,49:32:107:0.458:2	0/1:0,113:32:115:1.00:2
chr19	49261267	rs3745710	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,44:30:77:0.571:2	./.	./.	0/1:22,30:30:53:0.577:2	./.
chr19	49261368	rs739320	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:11,6:32:17:0.353:2	./.	0/1:0,9:29:9:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,9:33:9:1.00:2	0/1:3,5:31:8:0.625:2	0/1:14,7:32:21:0.333:2	0/1:0,7:31:7:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,4:30:4:1.00:2
chr19	49303070	rs11548193	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,12:32:16:0.750:2	./.	./.	./.	./.
chr19	49309776	rs117048185	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:32:6:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	49334991	rs62127966	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,15:30:48:0.313:2	./.	./.	./.	./.
chr19	49339098	rs8110220	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,25:33:46:0.543:2	0/1:21,24:33:45:0.533:2	./.	0/1:22,26:32:49:0.542:2	./.	./.	./.	./.
chr19	49339121	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:31:46:0.087:2	./.	./.	./.	./.
chr19	49342536	rs76292221	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,14:33:36:0.389:2	./.
chr19	49344521	rs12460394	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,17:31:40:0.425:2	./.
chr19	49348842	rs61755449	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,16:30:25:0.640:2	./.
chr19	49368843	rs506425	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,49:32:104:0.471:2	0/1:2,116:31:118:0.983:2	./.	0/1:74,46:32:120:0.383:2	./.	./.	0/1:59,53:32:112:0.473:2	./.
chr19	49370819	rs62127976	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,22:29:37:0.611:2	./.	./.
chr19	49376582	rs564196	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:31:9:0.444:2	0/1:0,9:31:9:1.00:2	./.	./.	./.	0/1:6,5:31:11:0.455:2	0/1:2,2:33:4:0.500:2	./.
chr19	49376584	rs3786734	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,9:31:13:0.692:2	./.	./.	./.	./.	0/1:9,14:31:23:0.609:2
chr19	49377086	rs611251	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,8:33:21:0.381:2	0/1:0,22:32:22:1.00:2	./.	./.	./.	0/1:12,11:34:23:0.478:2	0/1:13,8:34:21:0.381:2	./.
chr19	49377242	rs557806	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,16:33:43:0.372:2	0/1:1,18:32:19:0.947:2	./.	./.	./.	./.	0/1:11,15:32:26:0.577:2	0/1:23,21:32:44:0.477:2
chr19	49377319	rs610308	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,23:30:47:0.489:2	0/1:5,35:29:40:0.875:2	./.	0/1:30,18:30:48:0.375:2	./.	0/1:25,27:29:52:0.519:2	0/1:12,15:31:27:0.556:2	0/1:19,22:29:41:0.537:2
chr19	49377424	rs11541192	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,46:31:109:0.422:2	./.	./.	./.	./.
chr19	49377436	rs556052	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,48:33:90:0.533:2	0/1:3,107:32:110:0.973:2	./.	0/1:70,47:31:117:0.402:2	./.	0/1:52,45:32:97:0.464:2	0/1:53,42:32:95:0.442:2	0/1:47,41:30:88:0.466:2
chr19	49377873	rs35023389	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,24:31:64:0.375:2	./.	./.	./.	./.
chr19	49377918	rs35087747	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,20:30:47:0.426:2	./.	./.	./.	./.
chr19	49378994	rs500079	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,5:25:11:0.455:2	./.
chr19	49379167	rs524	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,86:30:160:0.538:2	0/1:3,137:29:140:0.979:2	./.	0/1:61,63:30:124:0.508:2	./.	./.	0/1:79,42:29:121:0.347:2	./.
chr19	49379182	rs527	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,74:33:132:0.561:2	0/1:3,91:32:94:0.968:2	./.	0/1:38,41:33:79:0.519:2	./.	./.	0/1:63,30:33:93:0.323:2	./.
chr19	49385439	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,4:31:22:0.182:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	49391404	rs8112811	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,58:29:117:0.496:2	0/1:3,176:30:179:0.983:2	./.	./.	./.	./.	0/1:52,58:30:110:0.527:2	./.
chr19	49392867	rs147078776	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,20:31:41:0.488:2	0/1:24,14:31:38:0.368:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	49398405	rs34378208	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,11:33:31:0.355:2	0/1:8,10:32:19:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	49400634	rs7260579	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,35:31:93:0.376:2	0/1:5,149:31:154:0.968:2	./.	./.	./.	./.	0/1:67,37:32:104:0.356:2	0/1:53,44:32:98:0.454:2
chr19	49407660	rs1058483	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,29:33:78:0.372:2	./.	./.	./.	./.
chr19	49421966	rs2287836	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:33:66:1.00:2	0/1:0,39:32:39:1.00:2	0/1:1,14:33:15:0.933:2	0/1:36,39:33:75:0.520:2	0/1:33,40:31:73:0.548:2	0/1:2,64:31:66:0.970:2	0/1:0,92:33:92:1.00:2	0/1:3,95:32:98:0.969:2	0/1:31,40:33:71:0.563:2	0/1:0,74:33:74:1.00:2	./.
chr19	49436982	rs10401800	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,37:32:82:0.451:2	./.	./.	./.	./.	./.	./.
chr19	49438363	rs2270941	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:30:6:0.667:2	0/1:4,5:31:9:0.556:2	./.	0/1:0,29:29:29:1.00:2	./.	./.	./.	./.	./.	./.
chr19	49442933	rs2270939	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:6,9:31:15:0.600:2	0/1:5,6:30:11:0.545:2	./.	./.	0/1:0,21:28:21:1.00:2	./.	./.	./.	./.	./.	./.
chr19	49445817	rs11666105	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:19,22:33:41:0.537:2	0/1:18,16:32:34:0.471:2	0/1:7,7:34:14:0.500:2	./.	0/1:0,81:32:81:1.00:2	./.	./.	./.	./.	./.	./.
chr19	49459487	rs202190487	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:31:68:0.059:2	./.
chr19	49469087	rs2230267	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:33:3:1.00:2	0/1:0,61:32:61:1.00:2	0/1:60,36:31:96:0.375:2	0/1:53,48:32:101:0.475:2	./.	0/1:54,44:32:98:0.449:2	0/1:2,67:33:69:0.971:2	0/1:0,47:31:47:1.00:2	0/1:0,63:32:63:1.00:2
chr19	49477926	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:32:46:0.087:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	49485548	rs5464	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,11:31:21:0.524:2	0/1:1,86:31:87:0.989:2	0/1:69,32:31:101:0.317:2	./.	./.	./.	0/1:52,45:31:97:0.464:2	0/1:1,80:31:81:0.988:2	./.
chr19	49489172	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:33:116:0.034:2	./.	./.	./.
chr19	49497123	rs3764617	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,94:32:96:0.979:2
chr19	49497155	rs3764618	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,121:28:123:0.984:2
chr19	49506555	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:33:157:0.025:2	./.	./.	./.	./.
chr19	49507542	rs11558800	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:34:4:1.00:2
chr19	49507578	rs11558795	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:27:5:1.00:2
chr19	49513273	rs1062708	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,29:30:53:0.558:2	0/1:19,11:31:30:0.367:2	0/1:8,4:25:12:0.333:2	0/1:0,89:29:89:1.00:2	./.	0/1:47,47:29:94:0.500:2	0/1:33,60:30:93:0.645:2	0/1:56,50:30:106:0.472:2	0/1:1,64:30:65:0.985:2	./.	./.
chr19	49519058	rs749776	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,60:32:61:0.984:2	0/1:1,33:31:34:0.971:2	0/1:10,8:32:18:0.444:2	0/1:54,46:32:100:0.460:2	0/1:68,55:32:123:0.447:2	0/1:60,46:32:106:0.434:2	0/1:68,56:32:124:0.452:2	0/1:60,70:32:130:0.538:2	0/1:31,38:32:69:0.551:2	0/1:37,41:33:78:0.526:2	0/1:2,64:32:66:0.970:2
chr19	49519466	rs1056917	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:29:17:1.00:2	0/1:1,12:30:13:0.923:2	./.	0/1:17,16:29:33:0.485:2	0/1:15,11:32:26:0.423:2	0/1:19,7:32:26:0.269:2	0/1:10,3:32:13:0.231:2	0/1:20,11:30:31:0.355:2	0/1:14,20:31:35:0.588:2	0/1:16,8:28:24:0.333:2	0/1:2,10:31:12:0.833:2
chr19	49519550	rs149579838	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,15:31:23:0.652:2	./.	./.
chr19	49519855	rs1056914	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,64:29:65:0.985:2	0/1:1,41:29:42:0.976:2	./.	0/1:133,54:28:187:0.289:2	0/1:106,92:28:198:0.465:2	0/1:138,57:29:195:0.292:2	0/1:141,51:29:192:0.266:2	0/1:148,49:27:197:0.249:2	0/1:113,45:30:158:0.285:2	0/1:81,43:28:124:0.347:2	./.
chr19	49519873	rs6521	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,95:32:96:0.990:2	0/1:1,51:32:52:0.981:2	./.	0/1:132,63:32:195:0.323:2	./.	0/1:136,61:32:197:0.310:2	0/1:137,53:33:190:0.279:2	0/1:148,49:32:197:0.249:2	0/1:131,56:33:187:0.299:2	0/1:91,60:33:151:0.397:2	0/1:2,18:32:20:0.900:2
chr19	49519883	rs34349826	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,19:32:21:0.905:2
chr19	49519905	rs1800447	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,26:30:27:0.963:2
chr19	49520308	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,50:32:128:0.391:2	./.	./.	./.	./.	./.	./.
chr19	49520315	rs2387589	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,108:33:108:1.00:2	0/1:0,53:32:53:1.00:2	./.	0/1:72,92:33:164:0.561:2	./.	0/1:83,93:33:178:0.528:2	0/1:79,56:33:135:0.415:2	0/1:87,79:33:166:0.476:2	0/1:71,83:33:154:0.539:2	0/1:56,70:33:126:0.556:2	./.
chr19	49520372	rs3752210	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,109:31:109:1.00:2	0/1:0,62:32:62:1.00:2	0/1:2,14:31:16:0.875:2	0/1:63,81:31:144:0.563:2	0/1:75,55:31:130:0.423:2	0/1:80,71:30:151:0.470:2	0/1:64,50:31:114:0.439:2	0/1:73,76:31:149:0.510:2	0/1:81,81:32:162:0.500:2	0/1:56,64:30:120:0.533:2	0/1:1,126:31:127:0.992:2
chr19	49526167	rs200571270	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:4,7:31:11:0.636:2	0/1:5,3:33:8:0.375:2	./.	0/1:30,4:32:34:0.118:2	./.	./.	./.	./.	0/1:43,10:33:53:0.189:2	./.	0/1:9,12:33:21:0.571:2
chr19	49526191	rs28571120	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,5:32:49:0.102:2	0/1:24,5:30:30:0.172:2
chr19	49527249	rs201342765	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:81,4:35:85:0.047:2	0/1:53,9:32:62:0.145:2	./.	0/1:168,13:33:181:0.072:2	./.	0/1:174,5:33:179:0.028:2	./.	0/1:176,10:33:188:0.054:2	0/1:131,4:33:135:0.030:2	0/1:125,5:33:130:0.038:2	./.
chr19	49527263	rs202072529	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:185,4:33:189:0.021:2	./.	./.	./.	0/1:159,7:32:166:0.042:2	./.	./.	./.
chr19	49536390	rs201260266	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,12:28:48:0.255:2	0/1:24,4:31:28:0.143:2	0/1:0,2:30:2:1.00:2	0/1:28,15:30:43:0.349:2	./.	0/1:23,12:29:35:0.343:2	./.	./.	0/1:65,11:32:76:0.145:2	0/1:41,23:29:64:0.359:2	0/1:34,19:30:53:0.358:2
chr19	49539938	rs375604106	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:157,4:31:161:0.025:2	./.	./.	./.	./.	./.	./.
chr19	49540007	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:32:91:0.044:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	49547432	rs201199416	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:159,28:31:187:0.150:2	./.	./.	./.	0/1:125,44:32:169:0.260:2	./.	./.	./.
chr19	49547446	rs12610392	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,78:32:149:0.523:2	0/1:43,45:33:89:0.511:2	0/1:15,9:32:24:0.375:2	0/1:99,85:33:184:0.462:2	./.	0/1:104,88:33:192:0.458:2	./.	0/1:123,52:32:175:0.297:2	0/1:97,64:34:161:0.398:2	0/1:103,71:33:174:0.408:2	./.
chr19	49552033	rs1058676	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,5:27:124:0.040:2	./.	./.	./.	./.	./.
chr19	49558667	rs111775228	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,8:33:73:0.110:2	./.	./.	./.	0/1:3,29:33:32:0.906:2	./.	./.	./.
chr19	49573438	rs1017219	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:31:5:0.600:2	0/1:34,25:28:59:0.424:2	0/1:52,35:29:87:0.402:2	./.	./.	0/1:3,71:29:74:0.959:2	./.	0/1:28,33:28:61:0.541:2	./.
chr19	49573518	rs3810188	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:32:9:0.333:2	./.	0/1:43,33:32:76:0.434:2	./.	./.	./.	./.	0/1:17,23:33:40:0.575:2	./.
chr19	49574125	rs1611775	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,9:27:22:0.409:2	0/1:9,9:29:18:0.500:2	./.	./.	0/1:1,34:28:35:0.971:2	./.	0/1:23,11:28:34:0.324:2	./.
chr19	49575304	rs77059600	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.
chr19	49619561	rs28446007	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,52:31:128:0.406:2	./.	./.	./.	./.	./.	./.
chr19	49621592	rs1060967	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:47,44:32:91:0.484:2	0/1:24,26:32:50:0.520:2	./.	0/1:1,85:32:86:0.988:2	0/1:39,36:32:75:0.480:2	0/1:48,30:31:78:0.385:2	0/1:55,16:32:71:0.225:2	0/1:43,36:32:79:0.456:2	./.	0/1:49,36:32:85:0.424:2	./.
chr19	49621905	rs2232004	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,16:31:39:0.410:2	./.
chr19	49621964	rs2232003	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:29:40:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,105:29:105:1.00:2	0/1:93,58:29:151:0.384:2	0/1:66,46:30:112:0.411:2	0/1:2,97:29:99:0.980:2	0/1:0,82:29:82:1.00:2	0/1:0,61:30:63:1.00:2	0/1:27,28:27:55:0.509:2	0/1:27,20:29:47:0.426:2
chr19	49631698	rs76397153	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,24:31:47:0.511:2	./.
chr19	49640002	rs2303053	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:31:19:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,6:31:6:1.00:2	0/1:1,25:30:26:0.962:2	0/1:0,30:30:30:1.00:2	0/1:15,11:31:26:0.423:2	0/1:10,12:29:22:0.545:2	0/1:14,15:28:29:0.517:2	./.	0/1:11,17:31:28:0.607:2	./.
chr19	49640118	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:33:50:0.080:2	./.	./.
chr19	49641651	rs117880896	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,13:31:23:0.565:2	./.
chr19	49657613	rs139858400	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,55:32:124:0.447:2	./.	./.
chr19	49658084	rs57897109	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,90:32:172:0.526:2	./.	./.
chr19	49658209	rs3745297	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,160:28:164:0.982:2	0/1:1,85:28:86:0.988:2	0/1:17,15:30:32:0.469:2	0/1:2,142:28:144:0.986:2	0/1:79,81:29:160:0.506:2	0/1:75,82:28:157:0.522:2	./.	0/1:102,67:28:169:0.396:2	./.	./.	./.
chr19	49658268	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,42:30:94:0.447:2	./.	./.	./.	./.	./.
chr19	49658367	rs3745298	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,31:31:32:0.969:2	0/1:1,23:31:24:0.958:2	./.	0/1:1,30:31:31:0.968:2	0/1:41,14:30:55:0.255:2	0/1:16,22:30:38:0.579:2	./.	0/1:29,26:30:55:0.473:2	0/1:27,25:32:52:0.481:2	./.	./.
chr19	49658390	rs3745299	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,27:31:28:0.964:2	0/1:1,18:32:19:0.947:2	./.	0/1:1,25:33:26:0.962:2	0/1:38,12:29:50:0.240:2	0/1:14,17:34:31:0.548:2	./.	0/1:29,24:31:53:0.453:2	./.	./.	./.
chr19	49671281	rs34333830	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,15:31:28:0.536:2	./.	./.	./.	0/1:19,23:32:42:0.548:2	./.	./.
chr19	49671557	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:30:127:0.031:2	./.	./.	./.	./.	./.
chr19	49686173	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.
chr19	49699866	rs3745301	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,20:32:49:0.408:2	./.	./.	./.	0/1:22,27:33:49:0.551:2	./.	./.
chr19	49703672	rs377359117	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,18:30:36:0.500:2
chr19	49713969	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,18:29:38:0.474:2	./.	./.	./.	./.	./.	./.
chr19	49839015	rs354021	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,31:28:31:1.00:2	0/1:0,52:29:52:1.00:2	0/1:0,32:29:32:1.00:2	0/1:0,44:29:44:1.00:2	0/1:1,44:28:45:0.978:2	0/1:0,39:29:39:1.00:2	0/1:13,9:30:22:0.409:2	0/1:0,35:28:35:1.00:2
chr19	49842610	rs58575379	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,20:30:35:0.571:2	./.	./.	./.	./.
chr19	49843566	rs200341521	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,3:33:31:0.097:2	./.
chr19	49852030	rs75100029	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,16:32:31:0.516:2	./.	./.	./.	./.
chr19	49867913	rs919364	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:1,73:32:76:0.986:2	0/1:0,40:31:40:1.00:2	0/1:11,3:31:14:0.214:2	./.	./.	./.	./.	./.	0/1:55,59:32:114:0.518:2	0/1:75,58:32:133:0.436:2	0/1:35,53:32:88:0.602:2
chr19	49868868	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,4:31:24:0.167:2	./.	./.	./.	./.	./.
chr19	49869051	rs2303759	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,9:33:12:0.750:2	0/1:43,38:33:81:0.469:2	0/1:73,52:32:125:0.416:2	0/1:55,56:32:111:0.505:2	0/1:57,45:32:102:0.441:2	0/1:70,40:32:110:0.364:2	0/1:58,42:33:100:0.420:2	./.	0/1:32,28:33:60:0.467:2
chr19	49878115	rs1054770	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,18:32:42:0.429:2	0/1:15,14:33:29:0.483:2	0/1:21,17:32:38:0.447:2	0/1:19,20:32:39:0.513:2	0/1:25,26:32:51:0.510:2	0/1:21,17:33:38:0.447:2	./.	0/1:20,10:31:30:0.333:2
chr19	49878196	rs2288481	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,21:30:45:0.467:2	0/1:15,19:30:34:0.559:2	0/1:15,12:30:27:0.444:2	./.	0/1:5,9:31:14:0.643:2	0/1:13,11:32:24:0.458:2	./.	0/1:13,10:31:23:0.435:2
chr19	49878275	rs35389403	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,7:32:18:0.389:2	./.	./.	./.	./.	./.	./.
chr19	49894152	rs7256629	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:32:33:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,2:30:2:1.00:2	0/1:13,20:33:33:0.606:2	0/1:17,11:30:28:0.393:2	0/1:15,25:32:40:0.625:2	0/1:12,5:32:17:0.294:2	0/1:14,18:31:32:0.563:2	0/1:8,24:33:32:0.750:2	0/1:8,15:33:23:0.652:2	./.
chr19	49899076	rs10405154	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,17:33:17:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,2:31:2:1.00:2	0/1:5,13:33:18:0.722:2	0/1:5,14:33:19:0.737:2	0/1:4,12:32:16:0.750:2	0/1:16,10:31:26:0.385:2	0/1:13,14:32:27:0.519:2	0/1:13,12:33:25:0.480:2	0/1:12,6:33:18:0.333:2	./.
chr19	49901318	rs10421748	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,71:32:72:0.986:2	0/1:0,47:32:47:1.00:2	0/1:0,11:33:11:1.00:2	0/1:76,52:32:128:0.406:2	0/1:80,86:31:166:0.518:2	0/1:64,80:32:144:0.556:2	0/1:94,81:33:175:0.463:2	0/1:80,109:32:189:0.577:2	0/1:76,64:33:140:0.457:2	0/1:66,45:32:111:0.405:2	0/1:109,6:34:115:0.052:2
chr19	49902399	rs200723797	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,36:33:55:0.655:2	./.	./.	./.	./.	./.	./.	./.
chr19	49910139	rs112074780	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,32:32:64:0.500:2	./.	./.	./.	./.	./.	./.
chr19	49910939	rs79904084	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,29:30:67:0.433:2	./.	./.	./.	./.	./.	./.
chr19	49912262	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,5:25:95:0.053:2	./.	./.	./.	./.	./.
chr19	49912492	rs114010747	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,34:31:82:0.415:2	./.	./.	./.	./.
chr19	49920719	rs79452032	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,31:28:64:0.484:2	./.	./.	./.	./.	./.	./.
chr19	49949652	rs7462	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,92:32:93:0.989:2	0/1:0,57:32:57:1.00:2	./.	0/1:63,75:33:138:0.543:2	./.	0/1:64,60:32:124:0.484:2	./.	0/1:94,74:33:168:0.440:2	0/1:0,159:34:159:1.00:2	0/1:50,54:33:104:0.519:2	0/1:56,64:33:120:0.533:2
chr19	49950298	rs13394	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,63:31:64:0.984:2	0/1:0,32:32:32:1.00:2	0/1:3,12:31:15:0.800:2	0/1:1,81:31:82:0.988:2	0/1:0,86:29:86:1.00:2	0/1:0,78:30:78:1.00:2	0/1:51,51:30:102:0.500:2	0/1:0,104:30:104:1.00:2	0/1:0,95:32:95:1.00:2	0/1:55,48:31:103:0.466:2	0/1:47,36:31:83:0.434:2
chr19	49950356	rs12443	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,39:32:40:0.975:2	0/1:0,26:32:26:1.00:2	0/1:2,5:33:7:0.714:2	0/1:0,34:32:34:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,39:32:39:1.00:2	0/1:30,25:31:55:0.455:2	0/1:0,41:32:41:1.00:2	0/1:0,56:33:56:1.00:2	0/1:13,20:33:33:0.606:2	0/1:16,21:32:37:0.568:2
chr19	49950618	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:31:29:0.138:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	49954803	rs2293013	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:31:19:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,36:32:36:1.00:2	0/1:1,31:32:32:0.969:2	0/1:31,21:32:52:0.404:2	0/1:0,40:31:40:1.00:2	0/1:0,16:32:16:1.00:2	./.	0/1:15,11:32:26:0.423:2
chr19	49954807	rs2293012	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:31:18:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,35:32:35:1.00:2	0/1:1,31:32:32:0.969:2	0/1:29,21:33:50:0.420:2	0/1:0,42:32:42:1.00:2	0/1:0,17:32:17:1.00:2	./.	0/1:15,11:31:26:0.423:2
chr19	49964977	rs1320303	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,16:27:16:1.00:2	0/1:1,11:28:12:0.917:2	./.	0/1:0,31:26:32:1.00:2	0/1:17,24:28:41:0.585:2	0/1:0,52:28:52:1.00:2	0/1:27,11:27:38:0.289:2	0/1:0,36:28:36:1.00:2	0/1:1,27:27:28:0.964:2	0/1:14,13:28:27:0.481:2	0/1:13,16:25:29:0.552:2
chr19	49965173	rs7259560	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.
chr19	49967680	rs2293009	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,26:30:50:0.531:2	0/1:0,36:30:36:1.00:2	0/1:15,23:32:38:0.605:2	0/1:27,23:31:50:0.460:2	0/1:29,35:32:64:0.547:2	./.	./.	./.
chr19	49967981	rs11558188	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,43:31:43:1.00:2	0/1:0,31:31:31:1.00:2	./.	0/1:37,31:31:68:0.456:2	./.	0/1:46,23:32:69:0.333:2	./.	0/1:46,35:33:81:0.432:2	0/1:0,69:33:69:1.00:2	0/1:35,41:32:76:0.539:2	0/1:48,37:29:85:0.435:2
chr19	49969085	rs10853810	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,41:31:41:1.00:2	0/1:0,30:31:30:1.00:2	./.	0/1:28,29:31:57:0.509:2	./.	0/1:39,29:30:68:0.426:2	./.	0/1:39,38:30:77:0.494:2	0/1:2,53:31:55:0.964:2	0/1:27,13:32:40:0.325:2	0/1:34,20:31:54:0.370:2
chr19	49977929	rs75750998	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:90,67:28:157:0.427:2	./.	./.	./.	./.	./.	./.
chr19	49979398	rs17272847	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:32:9:0.333:2	./.	./.	./.	0/1:46,40:32:86:0.465:2	./.	./.	./.	./.
chr19	49983673	rs1042120	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:31:7:0.571:2	./.	0/1:0,6:30:6:1.00:2	./.	./.	./.	./.	./.
chr19	49990843	rs2271951	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,34:31:83:0.410:2	0/1:30,34:31:64:0.531:2	0/1:2,59:31:61:0.967:2	./.	./.	./.	./.	./.
chr19	49993535	rs1064257	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,11:31:29:0.379:2	0/1:6,6:33:12:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	49994988	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,4:33:35:0.114:2	./.	./.	./.	./.	./.	./.	./.
chr19	50000827	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:31:146:0.027:2	./.	./.	./.	./.
chr19	50017724	rs2878342	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,32:31:80:0.405:2	./.	./.	./.	./.	./.	./.
chr19	50042371	rs8105626	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,7:32:15:0.467:2	./.	./.	./.	./.	./.	./.
chr19	50045878	rs34654230	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,34:31:73:0.466:2	./.	./.	./.	./.	./.	./.
chr19	50045916	rs34459162	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,46:28:85:0.541:2	./.	./.	./.	./.	./.	./.
chr19	50046365	rs3187346	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:110,87:30:197:0.442:2	./.	./.	./.	./.	./.	./.
chr19	50046437	rs1129459	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,46:29:137:0.336:2	./.	./.	./.	./.	./.	./.
chr19	50059641	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:34:64:0.063:2	./.
chr19	50059982	rs4594362	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,24:32:37:0.649:2	./.	./.	./.
chr19	50086806	rs3745474	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:29:18:0.500:2	./.	0/1:0,11:31:11:1.00:2	./.	0/1:7,14:31:21:0.667:2	0/1:22,7:30:29:0.241:2	./.	./.
chr19	50091798	rs2288920	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,51:32:93:0.548:2	./.	0/1:1,95:31:96:0.990:2	./.	0/1:69,82:31:152:0.543:2	0/1:45,40:32:85:0.471:2	./.	./.
chr19	50097746	rs73058047	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,16:30:34:0.471:2	./.	./.	./.	./.	./.	./.	./.
chr19	50097784	rs10414643	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:33:14:0.500:2	./.	0/1:0,17:33:17:1.00:2	./.	0/1:12,6:34:18:0.333:2	0/1:16,6:35:22:0.273:2	0/1:5,10:32:15:0.667:2	./.
chr19	50098423	rs12462756	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,8:30:10:0.800:2	./.	0/1:0,25:29:25:1.00:2	./.	0/1:5,13:30:18:0.722:2	0/1:6,8:24:14:0.571:2	./.	./.
chr19	50099422	rs73058052	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,16:33:28:0.571:2	./.	0/1:13,19:32:32:0.594:2	./.	0/1:14,14:33:28:0.500:2	0/1:7,11:33:18:0.611:2	./.	./.
chr19	50100295	rs3745475	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	./.
chr19	50100484	rs77535345	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,4:32:12:0.333:2	./.
chr19	50124798	rs60445174	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,15:33:32:0.469:2	./.
chr19	50128370	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:32:113:0.035:2	./.
chr19	50139047	rs199924228	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,37:30:76:0.487:2	./.	./.	./.	./.	./.
chr19	50140092	rs1865077	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,19:31:34:0.559:2	0/1:10,15:31:25:0.600:2	0/1:1,4:32:6:0.800:2	0/1:38,24:32:62:0.387:2	0/1:42,38:31:80:0.475:2	0/1:0,57:31:57:1.00:2	0/1:31,50:31:81:0.617:2	0/1:2,86:32:88:0.977:2	0/1:0,50:32:50:1.00:2	0/1:28,17:31:45:0.378:2	0/1:0,40:32:40:1.00:2
chr19	50149458	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,7:31:17:0.412:2	./.	./.	./.	./.	./.
chr19	50154216	rs373203311	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,10:28:18:0.556:2	./.	./.	./.	./.	./.
chr19	50156896	rs10401743	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,15:33:15:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,11:30:11:1.00:2
chr19	50161091	rs61743199	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,8:31:18:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	50162909	rs7251	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:12,20:31:32:0.625:2	0/1:12,10:32:22:0.455:2	./.	0/1:22,24:31:46:0.522:2	./.	0/1:0,49:32:49:1.00:2	./.	0/1:25,35:31:60:0.583:2	0/1:0,66:32:66:1.00:2	./.	./.
chr19	50163054	rs187335764	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,27:31:65:0.415:2	./.	./.	./.
chr19	50188041	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:32:55:0.073:2	./.
chr19	50188046	rs138444838	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,3:33:13:0.231:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	50188067	rs143994257	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,30:32:67:0.448:2	./.	./.	./.
chr19	50193437	rs45613034	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,15:32:34:0.441:2	./.	./.	./.	./.
chr19	50204843	rs12973248	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,17:31:45:0.386:2	0/1:16,11:32:28:0.407:2	./.	0/1:24,40:30:64:0.625:2	0/1:42,49:30:91:0.538:2	./.	./.	./.	0/1:28,31:31:60:0.525:2	./.	./.
chr19	50207959	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:28:70:0.057:2	./.	./.	./.	./.
chr19	50209653	rs12978911	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,10:32:23:0.435:2	0/1:13,6:30:19:0.316:2	./.	0/1:14,10:30:24:0.417:2	0/1:13,17:32:30:0.567:2	./.	./.	./.	0/1:18,14:33:33:0.438:2	./.	./.
chr19	50243171	rs79485806	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,86:30:180:0.478:2	./.	./.	./.	./.
chr19	50251422	rs34701020	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,44:31:104:0.423:2	./.	./.	./.	./.	./.
chr19	50285809	rs76907345	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,25:31:72:0.347:2	0/1:27,14:31:41:0.341:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,25:31:67:0.373:2
chr19	50302618	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:32:102:0.039:2	./.	./.	./.
chr19	50302629	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:30:102:0.039:2	./.	./.	./.
chr19	50306198	rs28736735	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,22:31:40:0.550:2	./.	./.	./.	0/1:15,16:32:31:0.516:2	./.
chr19	50311976	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,3:31:30:0.100:2	./.	./.	./.	./.	./.	./.	./.
chr19	50312048	rs11557714	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,11:29:15:0.733:2	./.	./.	./.	./.	./.	./.	./.
chr19	50312653	rs2305921	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,5:29:8:0.625:2	./.	./.	./.	./.	./.
chr19	50332285	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:32:130:0.031:2	./.	./.
chr19	50338247	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:33:102:0.039:2	./.	./.	./.
chr19	50338373	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:34:144:0.028:2	./.	./.	./.	./.	./.
chr19	50358133	rs75478119	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,11:28:19:0.579:2	0/1:8,4:29:12:0.333:2	./.	./.	./.	0/1:15,21:27:36:0.583:2	./.	./.	0/1:12,21:29:33:0.636:2	0/1:0,28:27:28:1.00:2	./.
chr19	50358164	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,5:22:32:0.156:2	./.	./.	./.	./.
chr19	50360989	rs59595912	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,88:33:190:0.463:2	./.	./.
chr19	50364580	rs116192442	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,17:30:39:0.436:2	./.
chr19	50376348	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:34:4:0.500:2
chr19	50383591	rs8109661	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:32:81:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,112:32:112:1.00:2	0/1:0,137:32:137:1.00:2	0/1:0,144:32:144:1.00:2	0/1:0,142:32:142:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,97:32:97:1.00:2
chr19	50383636	rs3745486	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,60:32:110:0.545:2	0/1:80,47:32:127:0.370:2	./.	0/1:0,90:32:90:1.00:2	0/1:0,72:33:72:1.00:2	./.
chr19	50385340	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:33:100:0.040:2	./.	./.
chr19	50385373	rs35008717	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,44:31:75:0.587:2	0/1:24,11:31:35:0.314:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	50387729	rs35681527	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,77:27:194:0.397:2	./.	0/1:88,106:28:195:0.546:2	./.	./.
chr19	50399364	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,17:11:122:0.139:2	./.	0/1:70,13:12:83:0.157:2	./.
chr19	50404939	rs1290754	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:24,34:33:58:0.586:2	0/1:22,14:32:36:0.389:2	./.	0/1:35,27:32:62:0.435:2	./.	./.	0/1:36,40:32:76:0.526:2	./.	0/1:32,22:33:54:0.407:2	./.	0/1:26,53:33:79:0.671:2
chr19	50411742	rs892028	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,168:28:168:1.00:2	0/1:0,87:29:87:1.00:2	0/1:0,30:29:30:1.00:2	0/1:107,75:29:183:0.412:2	0/1:0,168:29:168:1.00:2	0/1:0,174:29:174:1.00:2	0/1:0,179:29:179:1.00:2	0/1:1,168:29:169:0.994:2	0/1:0,172:30:172:1.00:2	0/1:0,156:29:156:1.00:2	0/1:0,165:29:165:1.00:2
chr19	50412217	rs1062798	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,19:30:45:0.422:2	0/1:20,10:32:30:0.333:2	0/1:0,7:33:7:1.00:2	0/1:26,24:31:50:0.480:2	0/1:3,51:31:54:0.944:2	0/1:2,42:32:44:0.955:2	./.	0/1:1,64:32:65:0.985:2	./.	./.	0/1:24,21:31:45:0.467:2
chr19	50412417	rs999583	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,43:29:103:0.417:2	0/1:38,25:31:63:0.397:2	0/1:0,19:26:19:1.00:2	0/1:48,53:29:101:0.525:2	0/1:0,155:29:155:1.00:2	0/1:1,109:29:111:0.991:2	0/1:0,108:30:108:1.00:2	0/1:1,107:29:108:0.991:2	0/1:50,33:29:83:0.398:2	0/1:0,91:29:92:1.00:2	0/1:2,53:29:55:0.964:2
chr19	50412618	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:32:41:0.098:2	./.	./.
chr19	50412873	rs145084636	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,59:32:116:0.509:2	./.	./.	./.	./.	./.	./.	./.
chr19	50434197	rs12449	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,31:27:52:0.596:2	./.
chr19	50435747	rs283525	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,4:32:10:0.400:2	./.	0/1:0,3:31:3:1.00:2	0/1:11,11:30:22:0.500:2	0/1:1,20:29:21:0.952:2	0/1:0,20:29:20:1.00:2	0/1:0,16:28:16:1.00:2	0/1:0,13:29:13:1.00:2	0/1:26,10:32:36:0.278:2	0/1:0,8:31:8:1.00:2	0/1:0,23:28:23:1.00:2
chr19	50435862	rs283526	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:28:6:1.00:2	0/1:0,2:27:2:1.00:2	./.	0/1:0,20:28:20:1.00:2	0/1:0,14:28:14:1.00:2	0/1:2,6:27:8:0.750:2	0/1:2,12:28:14:0.857:2	./.	0/1:1,12:29:13:0.923:2	0/1:1,4:24:5:0.800:2
chr19	50453317	rs9304690	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,28:32:77:0.364:2	./.	./.	./.	0/1:32,35:31:67:0.522:2	0/1:38,27:34:65:0.415:2	./.	./.
chr19	50462298	rs62113133	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,20:32:56:0.357:2	./.	./.	./.	0/1:46,29:32:75:0.387:2	0/1:61,27:33:88:0.307:2	./.	./.
chr19	50462640	rs201794050	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,9:24:70:0.129:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	50462786	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,6:32:33:0.182:2	./.
chr19	50463034	rs200380048	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,82:31:197:0.416:2	./.
chr19	50463044	rs199756638	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,73:31:189:0.386:2	./.
chr19	50463670	rs79085301	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,19:33:44:0.432:2	./.
chr19	50463835	rs201026821	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:113,4:31:117:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr19	50463839	rs137891678	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:32:155:0.026:2	./.
chr19	50463982	rs9676436	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,14:33:24:0.583:2	0/1:93,50:32:143:0.350:2	0/1:83,41:30:124:0.331:2	0/1:80,48:32:128:0.375:2	./.	0/1:84,50:32:135:0.373:2	0/1:103,39:33:142:0.275:2	0/1:101,83:32:184:0.451:2	./.
chr19	50464023	rs76003715	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,6:31:119:0.050:2	./.	./.	./.	./.
chr19	50464171	rs200763096	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:33:7:0.571:2	./.	./.	0/1:17,5:30:22:0.227:2	./.	./.	./.	./.	./.
chr19	50464331	rs201622360	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:43,22:32:65:0.338:2	0/1:30,4:31:34:0.118:2	0/1:18,5:31:23:0.217:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	50484234	rs16981617	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,5:30:6:0.833:2	./.	./.	0/1:18,6:31:24:0.250:2	./.	./.	./.	./.	./.
chr19	50542478	rs139691184	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,70:32:147:0.476:2	./.	./.	./.
chr19	50549462	rs117757975	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:15,15:33:30:0.500:2	0/1:10,10:32:20:0.500:2	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	50662529	rs117949749	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,17:32:47:0.362:2	0/1:17,11:32:28:0.393:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	50662795	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:34:104:0.039:2	./.
chr19	50665984	rs73932425	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,33:32:71:0.465:2	./.	0/1:46,27:31:73:0.370:2	./.	0/1:43,33:33:76:0.434:2	./.	0/1:44,25:32:69:0.362:2
chr19	50666389	rs61742305	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,7:31:11:0.636:2	./.	0/1:7,5:31:12:0.417:2	./.	0/1:0,22:31:22:1.00:2	./.	0/1:2,4:31:6:0.667:2
chr19	50713655	rs8106196	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	50720940	rs34796700	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,50:29:133:0.376:2	./.	./.	./.
chr19	50726319	rs12609315	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,5:33:9:0.556:2	0/1:22,29:32:51:0.569:2	./.	0/1:48,27:31:75:0.360:2	0/1:53,26:32:79:0.329:2	0/1:47,42:32:89:0.472:2	./.	0/1:29,31:32:60:0.517:2	./.
chr19	50726570	rs4801822	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:32,15:32:47:0.319:2	0/1:21,18:31:39:0.462:2	./.	0/1:0,64:31:64:1.00:2	./.	0/1:46,39:30:85:0.459:2	0/1:44,37:31:81:0.457:2	0/1:0,67:31:67:1.00:2	0/1:42,35:32:77:0.455:2	0/1:44,30:31:75:0.405:2	./.
chr19	50733802	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:31:133:0.030:2	./.	./.	./.	./.
chr19	50755955	rs77895476	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,23:30:43:0.535:2	./.	./.	./.	./.	./.
chr19	50760716	rs378811	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,35:32:78:0.449:2	./.	./.	0/1:0,60:32:60:1.00:2	0/1:24,35:33:59:0.593:2	0/1:28,28:30:56:0.500:2
chr19	50762418	rs1651553	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,18:26:18:1.00:2	0/1:0,4:19:4:1.00:2	./.	0/1:0,18:29:18:1.00:2	0/1:0,13:29:13:1.00:2	0/1:14,9:25:23:0.391:2	0/1:0,11:29:11:1.00:2	0/1:0,19:27:19:1.00:2	./.	0/1:13,4:25:17:0.235:2	0/1:0,10:27:10:1.00:2
chr19	50763886	rs28482851	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:46,66:32:112:0.589:2	0/1:26,39:32:65:0.600:2	./.	./.	./.	./.	./.	0/1:188,4:32:192:0.021:2	./.	./.	0/1:71,85:32:156:0.545:2
chr19	50763889	rs12981413	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,44:32:114:0.386:2	0/1:43,25:32:68:0.368:2	0/1:0,17:32:17:1.00:2	0/1:1,150:32:151:0.993:2	0/1:1,183:32:184:0.995:2	0/1:85,77:31:162:0.475:2	0/1:1,192:32:193:0.995:2	0/1:6,176:31:182:0.967:2	./.	0/1:64,60:32:124:0.484:2	0/1:90,68:32:158:0.430:2
chr19	50771609	rs3745504	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,17:29:41:0.415:2	0/1:17,10:30:27:0.370:2	0/1:0,8:30:8:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,46:29:46:1.00:2	0/1:0,31:30:31:1.00:2	0/1:2,41:30:43:0.953:2	0/1:0,44:30:44:1.00:2	0/1:17,12:31:29:0.414:2	0/1:20,10:30:30:0.333:2	0/1:11,13:32:24:0.542:2
chr19	50796905	rs3745509	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:33:45:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,10:33:10:1.00:2	0/1:1,57:32:58:0.983:2	0/1:0,92:32:92:1.00:2	./.	0/1:56,53:32:109:0.486:2	0/1:49,23:31:72:0.319:2	0/1:32,35:32:67:0.522:2	0/1:0,49:33:49:1.00:2	0/1:0,56:32:56:1.00:2
chr19	50812897	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,43:30:87:0.494:2	./.	./.	./.
chr19	50826692	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,3:33:42:0.071:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	50826701	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,3:33:46:0.065:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	50826750	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:35:129:0.031:2	./.	./.
chr19	50862319	rs61729810	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,7:28:25:0.280:2	./.	./.	./.	./.	./.
chr19	50862768	rs11670727	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,18:31:44:0.409:2	./.	./.	./.
chr19	50863023	rs638294	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,82:29:83:0.988:2	0/1:63,43:28:106:0.406:2	./.	0/1:85,50:30:135:0.370:2	./.	0/1:0,52:29:52:1.00:2	./.	0/1:30,34:28:64:0.531:2
chr19	50865535	rs676314	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,39:32:40:0.975:2	0/1:32,23:31:55:0.418:2	./.	0/1:30,24:30:54:0.444:2	./.	0/1:0,39:33:39:1.00:2	./.	0/1:34,26:31:60:0.433:2
chr19	50905096	rs145324823	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,20:30:34:0.606:2	./.
chr19	50905134	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:31:69:0.058:2	./.	./.	./.	./.
chr19	50909765	rs2230245	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,5:32:20:0.250:2	./.	0/1:102,65:32:167:0.389:2	./.	./.	./.	./.	./.	./.
chr19	50918229	rs3218775	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,12:30:30:0.400:2	./.	./.	./.	./.	./.
chr19	50921173	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:32:71:0.056:2	./.
chr19	50926111	rs151132780	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,25:28:57:0.439:2
chr19	50926126	rs61729811	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,30:31:70:0.429:2
chr19	50926264	rs1673030	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,13:32:28:0.464:2	0/1:7,3:32:10:0.300:2	./.	0/1:1,24:29:25:0.960:2	0/1:0,19:28:19:1.00:2	0/1:24,9:31:33:0.273:2	0/1:0,15:32:15:1.00:2	0/1:15,3:33:18:0.167:2	0/1:0,25:32:25:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,19:31:19:1.00:2
chr19	50926265	rs11546996	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,13:31:28:0.464:2	0/1:7,3:32:10:0.300:2	./.	0/1:19,6:31:25:0.240:2	0/1:7,12:32:19:0.632:2	0/1:24,9:31:33:0.273:2	0/1:0,15:32:15:1.00:2	0/1:12,3:31:15:0.200:2	0/1:16,10:34:26:0.385:2	0/1:0,20:32:20:1.00:2	0/1:0,19:32:19:1.00:2
chr19	50944179	rs190315215	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,39:31:79:0.494:2	./.	./.	./.	./.	./.	./.
chr19	50954584	rs8105250	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:26,21:31:47:0.447:2	0/1:15,14:31:29:0.483:2	./.	0/1:37,20:33:57:0.351:2	./.	./.	./.	0/1:34,30:30:64:0.469:2	0/1:31,39:33:70:0.557:2	./.	0/1:0,59:31:59:1.00:2
chr19	50957397	rs25665	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:53,58:31:111:0.523:2	0/1:26,30:31:56:0.536:2	0/1:8,3:31:11:0.273:2	0/1:80,85:31:165:0.515:2	./.	./.	./.	0/1:83,89:31:172:0.517:2	0/1:76,66:32:142:0.465:2	./.	0/1:0,143:31:143:1.00:2
chr19	50957600	rs150466277	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,51:29:95:0.537:2	./.	./.	./.	./.	./.
chr19	50963369	rs199536376	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,14:15:67:0.209:2	0/1:40,10:13:50:0.200:2	0/1:59,11:15:70:0.157:2	./.	./.	./.
chr19	50963374	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,6:21:52:0.115:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	50963404	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,6:20:68:0.088:2	./.	./.	./.	./.	./.
chr19	50965272	rs25668	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,26:28:45:0.578:2	0/1:11,18:28:29:0.621:2	0/1:3,4:33:7:0.571:2	0/1:0,54:27:54:1.00:2	0/1:0,67:27:67:1.00:2	0/1:42,39:28:81:0.481:2	0/1:0,42:28:42:1.00:2	0/1:49,32:28:81:0.395:2	0/1:0,57:30:57:1.00:2	0/1:29,32:28:61:0.525:2	0/1:0,56:28:56:1.00:2
chr19	50967640	rs25667	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:10,11:33:21:0.524:2	0/1:8,12:32:20:0.600:2	./.	0/1:32,13:32:45:0.289:2	./.	./.	./.	0/1:32,14:31:46:0.304:2	0/1:22,24:33:46:0.522:2	./.	0/1:0,42:32:42:1.00:2
chr19	50983419	rs140693786	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,107:32:194:0.552:2	./.	./.	./.	./.
chr19	50983930	rs10409679	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:31:11:1.00:2	0/1:0,4:32:4:1.00:2	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	0/1:0,4:30:4:1.00:2
chr19	51014974	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,4:30:98:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr19	51016200	rs116995433	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,43:32:90:0.478:2	./.	./.	./.	./.
chr19	51020903	rs61751956	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,17:30:17:1.00:2	0/1:0,11:27:11:1.00:2	./.	0/1:0,9:29:9:1.00:2	0/1:28,11:26:39:0.282:2	0/1:2,29:29:31:0.935:2	0/1:15,15:28:30:0.500:2	0/1:0,18:27:18:1.00:2
chr19	51021602	rs61753461	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,3:30:12:0.250:2	./.	./.	./.	./.	./.
chr19	51022073	rs61745055	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,83:30:166:0.500:2	./.	./.	./.	./.	./.
chr19	51125986	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,34:29:197:0.173:2	./.	./.	./.
chr19	51128661	rs16986142	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,32:30:55:0.582:2	0/1:13,14:30:27:0.519:2	0/1:0,6:30:6:1.00:2	0/1:0,52:31:52:1.00:2	0/1:40,18:31:58:0.310:2	0/1:0,54:31:54:1.00:2	0/1:29,27:31:56:0.482:2	0/1:53,40:30:93:0.430:2	0/1:0,48:32:48:1.00:2	0/1:39,22:32:61:0.361:2	0/1:16,12:32:28:0.429:2
chr19	51133356	rs10407511	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:0,26:30:27:1.00:2	0/1:0,11:31:11:1.00:2	0/1:39,32:32:71:0.451:2	0/1:1,79:32:80:0.988:2	0/1:0,80:31:80:1.00:2	0/1:61,35:32:96:0.365:2	0/1:0,96:32:96:1.00:2	0/1:0,64:33:64:1.00:2	0/1:33,32:29:65:0.492:2	0/1:23,23:30:46:0.500:2
chr19	51165867	rs140991933	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,5:20:34:0.152:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	51171188	rs750578	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.
chr19	51172526	rs41275782	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,10:33:43:0.233:2	./.
chr19	51192527	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,6:30:74:0.081:2	./.
chr19	51228634	rs11084024	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,15:32:33:0.469:2	./.
chr19	51274386	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:32:71:0.056:2	./.	./.	./.	./.	./.
chr19	51274570	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:33:52:0.077:2	./.	./.	./.	./.	./.
chr19	51274851	rs201404376	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,2:33:4:0.500:2	0/1:47,7:31:54:0.130:2	0/1:57,12:30:69:0.174:2	0/1:63,11:32:75:0.149:2	0/1:25,6:30:31:0.194:2	0/1:38,15:33:53:0.283:2	0/1:38,11:33:49:0.224:2	0/1:30,8:32:39:0.211:2	0/1:58,17:32:75:0.227:2
chr19	51293955	rs2162784	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	./.	./.	0/1:6,6:32:12:0.500:2	./.	./.	./.	./.	./.
chr19	51294098	rs145475625	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,19:33:25:0.760:2	./.	./.	./.	./.	0/1:5,14:34:19:0.737:2	./.	./.
chr19	51296950	rs145731955	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:30:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	51297825	rs55716643	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	0/1:6,12:30:18:0.667:2	./.	./.	./.	0/1:15,20:32:35:0.571:2	./.	./.
chr19	51297826	rs55735528	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	0/1:6,13:29:19:0.684:2	./.	./.	./.	0/1:15,20:30:35:0.571:2	./.	./.
chr19	51301395	rs4801853	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:30:5:1.00:2	./.	0/1:43,21:31:64:0.328:2	./.	./.	./.	0/1:33,28:34:61:0.459:2	./.	./.
chr19	51301456	rs4802741	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:32:9:0.444:2	./.	0/1:41,25:31:66:0.379:2	./.	./.	./.	0/1:39,33:32:72:0.458:2	./.	./.
chr19	51302066	rs3745528	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,9:29:16:0.563:2	./.	0/1:112,82:28:194:0.423:2	./.	./.	./.	0/1:108,52:30:160:0.325:2	./.	./.
chr19	51302154	rs1043315	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:28:16:0.600:2	./.	0/1:66,73:30:139:0.525:2	./.	./.	./.	0/1:59,67:31:126:0.532:2	./.	./.
chr19	51302202	rs3745526	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	0/1:36,33:31:69:0.478:2	./.	./.	./.	0/1:28,32:33:60:0.533:2	./.	./.
chr19	51323232	rs5517	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,77:31:171:0.450:2	0/1:74,87:30:161:0.540:2	./.	./.	./.	0/1:85,82:31:167:0.491:2	./.	./.
chr19	51323473	rs5516	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:33:49:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,7:33:7:1.00:2	0/1:49,35:31:84:0.417:2	0/1:1,98:32:99:0.990:2	0/1:53,37:32:90:0.411:2	0/1:40,43:32:83:0.518:2	0/1:69,46:32:115:0.400:2	0/1:1,101:33:102:0.990:2	./.	0/1:51,47:32:98:0.480:2
chr19	51323501	rs1054713	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,84:28:86:0.977:2	0/1:0,56:27:56:1.00:2	0/1:0,12:28:12:1.00:2	0/1:72,64:28:136:0.471:2	0/1:2,158:28:160:0.988:2	0/1:89,60:28:149:0.403:2	0/1:82,75:28:157:0.478:2	0/1:100,86:28:186:0.462:2	0/1:1,154:29:155:0.994:2	./.	0/1:77,70:27:147:0.476:2
chr19	51323676	rs5515	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,58:30:133:0.436:2	./.	./.	./.	./.	0/1:83,78:32:161:0.484:2	./.	./.
chr19	51330932	rs3745522	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,13:30:51:0.255:2	./.	./.	./.	./.	./.	./.
chr19	51359497	rs11573	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:31:5:1.00:2	0/1:37,38:30:75:0.507:2	./.	./.	./.	0/1:61,34:29:96:0.358:2	0/1:35,25:31:60:0.417:2	0/1:45,26:30:71:0.366:2	./.
chr19	51359503	rs1135766	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:30:5:1.00:2	0/1:40,39:27:79:0.494:2	./.	./.	./.	0/1:61,39:29:101:0.390:2	0/1:35,25:30:60:0.417:2	0/1:46,28:29:75:0.378:2	./.
chr19	51359566	rs7252245	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,27:34:57:0.474:2	./.	./.
chr19	51361315	rs12946	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,17:31:30:0.567:2	0/1:19,19:31:38:0.500:2	0/1:25,23:31:48:0.479:2	0/1:17,11:30:28:0.393:2	./.
chr19	51361472	rs2003783	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:31:8:0.500:2	./.	./.	./.	./.	0/1:40,45:31:85:0.529:2	0/1:23,37:32:60:0.617:2	0/1:23,18:30:41:0.439:2	./.
chr19	51361737	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:33:129:0.031:2	./.	./.	./.	./.	./.
chr19	51362803	rs35192866	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:31:15:0.400:2	./.	./.	./.	./.	0/1:73,54:31:128:0.425:2	0/1:50,26:31:77:0.342:2	0/1:34,40:32:74:0.541:2	./.
chr19	51379893	rs198972	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,4:31:8:0.500:2	0/1:2,60:31:62:0.968:2	0/1:40,37:31:77:0.481:2	./.	./.	./.	./.	./.	./.
chr19	51380264	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,12:32:156:0.077:2	./.	./.	./.	./.
chr19	51381672	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:33:142:0.028:2	./.	./.
chr19	51381777	rs198977	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,35:31:71:0.493:2	0/1:53,44:32:97:0.454:2	0/1:38,45:31:83:0.542:2	./.	0/1:100,6:32:106:0.057:2	./.	0/1:33,42:33:75:0.560:2	./.
chr19	51411636	rs2569527	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:32:25:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,36:32:36:1.00:2
chr19	51412666	rs1654552	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,26:33:59:0.441:2	0/1:14,11:32:25:0.440:2	0/1:3,3:31:6:0.500:2	0/1:0,97:32:97:1.00:2	0/1:43,35:31:78:0.449:2	0/1:42,25:31:67:0.373:2	0/1:4,76:32:80:0.950:2	./.	0/1:33,31:33:64:0.484:2	./.	0/1:33,36:33:69:0.522:2
chr19	51412668	rs1654551	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,29:31:68:0.426:2	0/1:34,31:34:65:0.477:2	0/1:31,23:33:54:0.426:2	./.
chr19	51452250	rs183854	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:29:87:1.00:2	0/1:0,38:28:38:1.00:2	0/1:0,16:28:16:1.00:2	0/1:1,87:29:88:0.989:2	0/1:0,78:28:78:1.00:2	0/1:0,87:29:87:1.00:2	0/1:0,74:29:74:1.00:2	0/1:0,91:28:91:1.00:2	0/1:0,86:29:86:1.00:2	0/1:0,75:29:76:1.00:2	0/1:0,101:29:101:1.00:2
chr19	51465096	rs1701950	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,58:31:118:0.496:2	./.	./.	./.	0/1:41,43:31:84:0.512:2
chr19	51466703	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:31:149:0.027:2	./.	./.	./.	./.
chr19	51480840	rs1654528	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,94:33:96:0.979:2	0/1:1,65:33:66:0.985:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	51483620	rs35354640	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,91:33:193:0.472:2	./.	0/1:101,91:33:194:0.474:2	0/1:106,81:33:187:0.433:2	./.	0/1:115,73:34:188:0.388:2	./.	./.
chr19	51485622	rs2659067	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:34:3:1.00:2	0/1:0,43:33:43:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,58:33:58:1.00:2	0/1:40,22:33:62:0.355:2	0/1:0,63:33:63:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,42:32:42:1.00:2
chr19	51503285	rs16988799	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,33:31:60:0.550:2	./.	0/1:36,28:32:64:0.438:2	./.	./.	./.	./.
chr19	51503331	rs10409072	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,42:31:89:0.472:2	./.	0/1:57,39:32:96:0.406:2	./.	./.	./.
chr19	51503940	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,36:30:99:0.364:2	./.	./.	./.
chr19	51504415	rs34542531	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,20:32:51:0.392:2	./.	0/1:15,13:34:28:0.464:2	./.	./.	./.
chr19	51507020	rs2075802	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,10:34:12:0.833:2	0/1:50,49:32:99:0.495:2	0/1:87,52:32:139:0.374:2	0/1:70,53:31:123:0.431:2	0/1:53,66:32:119:0.555:2	0/1:1,119:32:120:0.992:2	./.	0/1:0,68:33:68:1.00:2	0/1:0,74:32:74:1.00:2
chr19	51518060	rs61752564	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,6:34:94:0.064:2	./.	./.	./.
chr19	51519236	rs2075690	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:14,21:25:35:0.600:2	0/1:5,10:26:15:0.667:2	./.	0/1:16,16:26:32:0.500:2	./.	0/1:20,14:24:34:0.412:2	0/1:25,13:27:38:0.342:2	0/1:28,10:24:38:0.263:2	./.	./.	0/1:0,20:26:20:1.00:2
chr19	51519259	rs2075689	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:32,31:30:63:0.492:2	0/1:9,15:31:24:0.625:2	./.	0/1:27,29:30:56:0.518:2	./.	0/1:33,33:29:66:0.500:2	0/1:50,31:30:81:0.383:2	0/1:50,21:29:71:0.296:2	./.	./.	0/1:0,44:30:44:1.00:2
chr19	51519346	rs1061368	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,10:31:13:0.769:2	0/1:52,36:29:88:0.409:2	./.	./.	./.	0/1:64,54:29:118:0.458:2	./.	./.	0/1:0,57:28:57:1.00:2
chr19	51519364	rs2075688	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,32:29:63:0.508:2	0/1:12,14:28:26:0.538:2	0/1:3,9:31:12:0.750:2	0/1:44,35:31:79:0.443:2	0/1:64,64:30:128:0.500:2	0/1:38,45:31:84:0.542:2	0/1:62,52:31:114:0.456:2	0/1:3,90:31:93:0.968:2	./.	0/1:28,37:30:65:0.569:2	0/1:0,42:32:42:1.00:2
chr19	51520487	rs3745535	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,8:29:27:0.296:2	0/1:11,3:32:14:0.214:2	./.	0/1:21,7:30:28:0.250:2	0/1:18,9:28:27:0.333:2	0/1:16,4:26:20:0.200:2	./.	0/1:0,6:24:6:1.00:2	./.	0/1:9,5:30:14:0.357:2	0/1:0,6:30:6:1.00:2
chr19	51522291	rs2304157	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	0/1:0,3:31:3:1.00:2	./.	0/1:2,3:30:5:0.600:2	./.
chr19	51527364	rs1048328	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,52:31:123:0.423:2	./.	./.	./.	./.	./.
chr19	51527970	rs117268623	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:18,20:30:38:0.526:2	0/1:13,20:32:33:0.606:2	./.	./.	./.	./.	0/1:53,61:31:114:0.535:2	./.	./.	./.	./.
chr19	51528041	rs3745539	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,34:31:68:0.500:2	./.	0/1:50,46:32:96:0.479:2	./.	./.	0/1:32,38:33:70:0.543:2	./.
chr19	51530693	rs1474520	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,16:32:26:0.615:2	0/1:3,4:32:7:0.571:2	0/1:0,2:33:2:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,19:30:19:1.00:2	0/1:25,15:30:40:0.375:2	0/1:19,12:33:31:0.387:2	0/1:0,28:32:28:1.00:2	0/1:0,17:32:17:1.00:2
chr19	51530741	rs61752567	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,26:31:52:0.500:2	./.	./.	./.	./.	./.	0/1:16,12:32:28:0.429:2
chr19	51535130	rs3745540	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,20:33:39:0.526:2	0/1:14,10:33:24:0.417:2	0/1:1,5:32:6:0.833:2	0/1:1,51:33:52:0.981:2	0/1:23,27:33:50:0.540:2	0/1:0,59:33:59:1.00:2	0/1:0,37:33:37:1.00:2	./.	0/1:30,29:34:59:0.492:2	0/1:26,26:33:52:0.500:2	0/1:0,26:33:26:1.00:2
chr19	51535321	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,11:31:19:0.579:2	./.	./.	./.	./.	./.
chr19	51563265	rs34089525	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,31:29:44:0.705:2	./.	./.	0/1:17,30:31:47:0.638:2	./.
chr19	51584916	rs2569491	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:2,55:29:57:0.965:2	0/1:0,34:30:34:1.00:2	./.	0/1:74,50:29:124:0.403:2	./.	0/1:50,62:29:112:0.554:2	./.	0/1:68,53:29:121:0.438:2	0/1:56,52:31:108:0.481:2	0/1:0,73:30:73:1.00:2	0/1:49,33:30:82:0.402:2
chr19	51584951	rs35287116	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:2,73:31:75:0.973:2	0/1:0,35:29:35:1.00:2	./.	0/1:89,71:31:160:0.444:2	./.	0/1:67,78:30:145:0.538:2	./.	0/1:82,58:30:140:0.414:2	0/1:75,64:32:139:0.460:2	0/1:0,97:30:97:1.00:2	0/1:1,94:31:95:0.989:2
chr19	51585978	rs117229324	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,15:31:43:0.349:2	./.	./.	./.	./.	./.	./.
chr19	51628468	rs61744734	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,36:32:62:0.581:2	./.	./.
chr19	51628529	rs2075803	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,18:31:31:0.581:2	0/1:22,9:31:31:0.290:2	0/1:5,5:31:10:0.500:2	0/1:23,34:31:57:0.596:2	0/1:19,12:30:31:0.387:2	0/1:1,40:30:41:0.976:2	0/1:0,25:31:25:1.00:2	0/1:31,13:31:44:0.295:2	0/1:0,34:32:34:1.00:2	0/1:1,38:31:39:0.974:2	0/1:37,27:31:64:0.422:2
chr19	51630482	rs2258983	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,17:29:30:0.567:2	0/1:12,8:31:20:0.400:2	./.	0/1:22,26:30:48:0.542:2	0/1:37,15:31:52:0.288:2	0/1:1,65:31:66:0.985:2	0/1:0,57:31:57:1.00:2	0/1:31,41:31:72:0.569:2	0/1:0,52:32:52:1.00:2	0/1:0,43:31:43:1.00:2	0/1:33,24:32:57:0.421:2
chr19	51631215	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,35:29:71:0.500:2	./.	./.	./.	./.	./.
chr19	51631709	rs61739656	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:124,4:31:128:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr19	51631719	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:120,4:35:124:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr19	51656454	rs273662	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:31:47:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,6:30:6:1.00:2	0/1:1,50:31:51:0.980:2	0/1:1,31:31:32:0.969:2	0/1:26,20:31:46:0.435:2	0/1:25,16:30:41:0.390:2	0/1:0,40:31:40:1.00:2	0/1:2,54:31:56:0.964:2	0/1:0,47:30:47:1.00:2	0/1:35,26:31:62:0.426:2
chr19	51728477	rs12459419	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,22:29:44:0.500:2	0/1:25,22:31:47:0.468:2	./.	0/1:20,20:31:40:0.500:2	./.	0/1:0,57:31:57:1.00:2	0/1:19,12:29:31:0.387:2	0/1:13,26:31:39:0.667:2
chr19	51728641	rs2455069	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,36:30:76:0.474:2	0/1:23,17:28:40:0.425:2	0/1:2,3:32:5:0.600:2	0/1:55,48:30:103:0.466:2	0/1:36,17:28:53:0.321:2	0/1:0,59:30:59:1.00:2	0/1:41,29:30:70:0.414:2	0/1:0,69:30:69:1.00:2	./.	0/1:33,29:31:62:0.468:2	./.
chr19	51738917	rs35112940	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,5:29:14:0.357:2	./.	./.	./.	0/1:57,41:31:99:0.418:2	./.	./.	0/1:32,35:32:67:0.522:2	0/1:34,25:32:59:0.424:2
chr19	51768749	.	C	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,9:27:83:0.108:2	0/1:111,13:22:124:0.105:2	0/1:109,10:24:119:0.084:2	./.	0/1:118,9:26:127:0.071:2	./.	./.	./.
chr19	51770654	rs147370216	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	51831097	rs200107403	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,20:32:33:0.606:2	./.	./.	./.	./.
chr19	51835844	rs184769661	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,19:30:43:0.442:2	./.	./.	./.	./.	./.	./.	./.
chr19	51837171	rs7255306	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,18:32:32:0.563:2	0/1:15,11:32:26:0.423:2	./.	0/1:25,26:32:51:0.510:2	0/1:2,21:32:23:0.913:2	./.	./.	./.	./.	./.	0/1:31,24:33:55:0.436:2
chr19	51841417	rs34380065	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:2,2:33:4:0.500:2	./.	0/1:9,5:33:14:0.357:2	0/1:4,3:30:7:0.429:2	0/1:5,5:32:10:0.500:2	./.	0/1:0,3:32:3:1.00:2	./.	0/1:2,5:33:7:0.714:2	0/1:1,2:32:3:0.667:2
chr19	51843808	rs7259266	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,4:26:4:1.00:2	0/1:1,2:31:3:0.667:2	./.	0/1:1,7:31:8:0.875:2	./.	./.	./.	0/1:0,6:31:6:1.00:2	0/1:0,3:29:3:1.00:2	./.	./.
chr19	51844978	rs8105710	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,9:31:26:0.346:2	./.	./.	0/1:10,13:32:23:0.565:2	0/1:7,6:30:13:0.462:2	0/1:15,22:31:37:0.595:2	./.	0/1:0,26:31:26:1.00:2	0/1:12,20:30:32:0.625:2	0/1:20,17:32:37:0.459:2	0/1:14,16:32:30:0.533:2
chr19	51845371	rs10414211	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,22:33:50:0.440:2	0/1:16,10:30:26:0.385:2	0/1:3,2:36:5:0.400:2	0/1:19,20:32:39:0.513:2	0/1:37,29:32:66:0.439:2	0/1:28,27:32:55:0.491:2	./.	0/1:0,53:32:53:1.00:2	0/1:24,9:32:33:0.273:2	0/1:18,21:30:39:0.538:2	0/1:17,21:32:38:0.553:2
chr19	51850290	rs1130426	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,33:31:58:0.569:2	0/1:21,17:31:38:0.447:2	0/1:0,11:32:11:1.00:2	0/1:40,29:28:69:0.420:2	0/1:2,90:31:92:0.978:2	0/1:0,84:31:84:1.00:2	0/1:1,95:31:96:0.990:2	./.	0/1:0,78:31:78:1.00:2	0/1:26,31:31:57:0.544:2	0/1:1,52:31:53:0.981:2
chr19	51856507	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:32:76:0.053:2	./.	./.	./.	./.	./.
chr19	51871195	rs3745403	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,19:30:33:0.576:2	0/1:17,23:30:40:0.575:2	0/1:7,22:29:29:0.759:2	./.	./.	./.	0/1:0,14:31:14:1.00:2	0/1:2,12:30:14:0.857:2
chr19	51885766	rs8111243	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,36:33:80:0.450:2	./.	./.	./.
chr19	51917008	rs61741687	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,28:32:51:0.549:2	./.	./.
chr19	51917735	rs1974821	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,58:32:120:0.483:2	0/1:51,25:32:76:0.329:2	./.	./.
chr19	51918112	rs3810099	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,27:30:55:0.491:2	0/1:13,25:30:38:0.658:2	./.	./.
chr19	51918135	rs1833785	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,12:31:38:0.316:2	0/1:6,21:33:27:0.778:2	./.	./.
chr19	51918360	rs61741672	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,16:32:32:0.500:2	0/1:19,10:33:29:0.345:2	./.	./.
chr19	51919240	rs79484306	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,28:31:84:0.333:2	./.
chr19	51919263	rs7258951	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,8:30:56:0.143:2	./.
chr19	51919267	rs7258638	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:32:51:0.078:2	./.
chr19	51919321	rs61741671	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,12:27:28:0.429:2	./.	./.	./.
chr19	51919949	rs9304711	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:119,72:30:191:0.377:2	0/1:54,41:30:95:0.432:2	0/1:15,12:29:27:0.444:2	0/1:117,79:29:196:0.403:2	./.	0/1:100,88:29:188:0.468:2	0/1:117,80:30:197:0.406:2	./.	./.	0/1:94,65:29:159:0.409:2	./.
chr19	51919998	rs61741677	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,73:30:174:0.420:2	./.	./.
chr19	51920196	rs73049612	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,6:29:50:0.120:2	0/1:31,8:29:39:0.205:2	./.	./.	0/1:48,6:30:54:0.111:2	0/1:40,6:31:46:0.130:2	./.	./.
chr19	51920613	rs1010425	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,84:32:85:0.988:2	0/1:0,36:31:36:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,79:31:79:1.00:2	0/1:2,65:31:67:0.970:2	0/1:0,84:32:84:1.00:2	0/1:0,89:32:89:1.00:2	0/1:3,102:32:105:0.971:2	0/1:45,54:33:99:0.545:2	0/1:2,81:31:83:0.976:2	0/1:0,92:31:92:1.00:2
chr19	51920619	rs61741679	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,48:29:101:0.480:2	./.	./.	./.
chr19	51920809	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:147,4:32:151:0.026:2	./.	./.	./.	./.	./.	./.
chr19	51920850	rs3810102	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,42:30:99:0.429:2	./.	./.	./.
chr19	51955632	rs28379613	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,91:32:169:0.538:2
chr19	51955752	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:34:118:0.034:2	./.	./.	./.
chr19	51957482	rs61735205	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,31:33:69:0.449:2	./.	./.	./.	./.	./.	./.	./.
chr19	51957515	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,4:30:37:0.108:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	51957521	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:32:41:0.098:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	51957556	rs3829659	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,47:29:116:0.405:2	./.	./.	./.	./.	0/1:71,41:30:112:0.366:2
chr19	51960940	rs10409962	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,23:31:46:0.500:2
chr19	51981753	rs11878388	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,6:34:20:0.300:2	./.	./.	./.	0/1:16,6:32:22:0.273:2
chr19	51983673	rs61743859	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,27:31:70:0.386:2	./.	./.	0/1:54,34:31:88:0.386:2	./.	./.	./.	0/1:42,38:31:80:0.475:2
chr19	51984656	rs62115071	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,32:31:78:0.410:2	./.	./.	./.	./.	./.	./.	./.
chr19	51984725	rs8106673	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:31:86:1.00:2	0/1:0,52:32:53:1.00:2	0/1:10,13:30:23:0.565:2	0/1:0,122:31:122:1.00:2	0/1:1,139:31:140:0.993:2	0/1:94,58:31:152:0.382:2	0/1:103,89:31:192:0.464:2	0/1:1,187:31:189:0.995:2	0/1:0,119:32:119:1.00:2	./.	0/1:0,106:31:106:1.00:2
chr19	51984727	rs12610545	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,54:28:106:0.509:2
chr19	51986547	rs10426247	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,53:30:104:0.510:2	./.	./.	0/1:56,38:30:94:0.404:2	./.	./.	./.	0/1:44,23:31:67:0.343:2
chr19	51995046	rs57043266	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,13:28:19:0.684:2	./.	./.	./.	0/1:10,21:32:31:0.677:2	./.	./.
chr19	52000624	rs3752135	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:32:92:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,7:30:7:1.00:2	0/1:85,93:32:178:0.522:2	0/1:0,97:32:97:1.00:2	0/1:0,159:32:159:1.00:2	0/1:1,115:32:116:0.991:2	0/1:0,131:32:131:1.00:2	0/1:0,142:32:143:1.00:2	0/1:1,142:32:143:0.993:2	0/1:90,57:31:147:0.388:2
chr19	52000659	rs28744388	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,63:32:122:0.516:2	0/1:37,40:32:77:0.519:2	./.	./.	./.	./.	./.	./.	0/1:95,96:32:191:0.503:2	./.	./.
chr19	52000672	rs3829658	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:63,56:30:119:0.471:2	0/1:43,34:31:77:0.442:2	0/1:0,9:31:9:1.00:2	./.	0/1:111,53:31:164:0.323:2	0/1:104,77:30:181:0.425:2	0/1:3,140:31:143:0.979:2	0/1:0,152:31:152:1.00:2	0/1:100,88:32:188:0.468:2	0/1:0,173:31:173:1.00:2	./.
chr19	52001282	rs56102305	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,16:33:36:0.444:2	0/1:14,14:32:28:0.500:2	./.	./.	./.	./.	./.	./.	0/1:42,27:33:69:0.391:2	./.	./.
chr19	52001396	rs61743963	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,19:31:34:0.559:2	0/1:11,12:31:23:0.522:2	./.	./.	./.	./.	./.	./.	0/1:26,29:32:55:0.527:2	./.	./.
chr19	52001485	rs11668530	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:30:18:0.500:2	0/1:5,6:31:11:0.545:2	./.	./.	./.	0/1:23,18:27:41:0.439:2	0/1:0,23:28:23:1.00:2	0/1:1,43:28:44:0.977:2	0/1:14,11:30:25:0.440:2	0/1:20,20:28:40:0.500:2	./.
chr19	52002488	rs968491	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:33:45:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,10:32:10:1.00:2	0/1:59,35:33:94:0.372:2	0/1:0,49:32:49:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,88:34:88:1.00:2	0/1:0,61:33:61:1.00:2	0/1:39,34:33:73:0.466:2
chr19	52002493	rs59372820	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,20:31:42:0.476:2	0/1:15,20:31:35:0.571:2	./.	0/1:56,33:31:89:0.371:2	0/1:33,16:31:49:0.327:2	0/1:28,30:31:58:0.517:2	./.	./.	0/1:48,32:32:81:0.400:2	./.	0/1:41,29:30:71:0.414:2
chr19	52002729	rs2009362	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:29,40:30:69:0.580:2	0/1:16,19:32:35:0.543:2	0/1:0,15:32:15:1.00:2	./.	0/1:70,55:31:125:0.440:2	0/1:44,48:30:92:0.522:2	0/1:0,117:31:117:1.00:2	0/1:0,100:32:101:1.00:2	0/1:55,27:32:82:0.329:2	0/1:0,51:31:51:1.00:2	./.
chr19	52003331	rs6509544	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,128:33:130:0.985:2	0/1:0,88:32:88:1.00:2	0/1:0,21:33:21:1.00:2	0/1:113,72:33:185:0.389:2	0/1:0,92:32:92:1.00:2	0/1:0,160:32:160:1.00:2	0/1:0,122:32:122:1.00:2	0/1:1,170:33:171:0.994:2	0/1:1,187:33:188:0.995:2	0/1:0,156:32:156:1.00:2	0/1:105,87:33:192:0.453:2
chr19	52004743	rs3810110	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:47,51:30:98:0.520:2	0/1:45,29:31:74:0.392:2	0/1:0,9:30:9:1.00:2	./.	0/1:68,53:30:121:0.438:2	0/1:66,58:30:124:0.468:2	0/1:0,108:30:108:1.00:2	0/1:3,112:30:115:0.974:2	0/1:67,67:31:134:0.500:2	0/1:2,113:30:115:0.983:2	./.
chr19	52004795	rs61742108	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:36,24:32:62:0.400:2	0/1:33,21:32:55:0.389:2	0/1:0,7:29:7:1.00:2	./.	0/1:43,32:31:76:0.427:2	./.	./.	./.	0/1:51,44:33:100:0.463:2	./.	./.
chr19	52004903	rs16982743	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,14:30:37:0.378:2	0/1:21,16:30:37:0.432:2	./.	0/1:46,30:30:76:0.395:2	0/1:60,35:30:95:0.368:2	0/1:33,41:30:74:0.554:2	./.	./.	0/1:38,31:31:69:0.449:2	./.	0/1:43,26:29:70:0.377:2
chr19	52033108	rs74352887	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,26:30:48:0.542:2	0/1:20,19:30:39:0.487:2	0/1:34,28:30:62:0.452:2	./.	0/1:21,15:31:36:0.417:2	./.	./.	0/1:21,23:32:44:0.523:2
chr19	52033158	rs35931837	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,34:33:66:0.515:2	./.	./.
chr19	52033206	rs2005199	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,31:32:54:0.574:2	./.	./.	./.	./.
chr19	52033742	rs2305772	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:26,15:31:41:0.366:2	0/1:11,13:32:24:0.542:2	0/1:0,12:32:12:1.00:2	./.	0/1:39,37:31:76:0.487:2	0/1:32,43:31:75:0.573:2	0/1:37,31:31:68:0.456:2	0/1:31,42:32:73:0.575:2	0/1:36,39:32:75:0.520:2	0/1:0,61:32:61:1.00:2	./.
chr19	52033760	rs148934624	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,28:29:52:0.538:2	./.
chr19	52034469	rs1993462	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,10:32:25:0.400:2	0/1:9,22:31:31:0.710:2	0/1:27,16:31:43:0.372:2	0/1:9,14:31:23:0.609:2	./.	./.	./.	0/1:17,10:30:27:0.370:2
chr19	52034549	rs62617068	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,22:31:53:0.415:2	0/1:10,18:31:28:0.643:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	52084729	rs200667551	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:33:134:0.030:2	./.
chr19	52084764	rs376635595	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,5:33:162:0.031:2	./.	./.	./.
chr19	52085095	rs35431178	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,15:31:38:0.395:2	./.	./.	./.	./.	./.	./.
chr19	52090014	rs35625154	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:32:12:0.500:2	./.	0/1:36,42:32:78:0.538:2	./.	./.	./.	./.	./.	./.
chr19	52090100	rs45541134	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,19:33:53:0.358:2	0/1:31,20:33:51:0.392:2	./.	./.	0/1:2,46:32:48:0.958:2	./.	./.	0/1:2,42:32:44:0.955:2
chr19	52090554	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:32:81:0.049:2	./.	./.	./.	./.
chr19	52115645	rs3829655	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,37:30:37:1.00:2	0/1:1,29:30:30:0.967:2	0/1:0,3:32:3:1.00:2	./.	./.	./.	0/1:20,9:30:29:0.310:2	0/1:0,64:28:64:1.00:2	0/1:23,22:29:45:0.489:2	0/1:12,21:29:33:0.636:2	0/1:0,56:29:56:1.00:2
chr19	52115646	rs61736483	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,17:31:38:0.447:2	0/1:17,13:32:30:0.433:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	52130488	rs17740650	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,18:31:42:0.429:2	0/1:22,24:31:46:0.522:2	./.	./.	./.	./.
chr19	52130788	rs8104955	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,16:31:39:0.410:2	./.
chr19	52130830	rs8107754	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:8,19:30:27:0.704:2	0/1:15,9:31:24:0.375:2	0/1:0,7:30:7:1.00:2	./.	./.	0/1:25,36:30:61:0.590:2	0/1:27,25:30:52:0.481:2	0/1:29,44:30:73:0.603:2	0/1:31,30:32:61:0.492:2	0/1:23,18:31:41:0.439:2	0/1:1,41:29:42:0.976:2
chr19	52130925	rs8108074	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,6:32:14:0.429:2	./.
chr19	52131119	rs2278831	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,12:33:39:0.308:2	0/1:23,11:32:34:0.324:2	./.	./.	./.	./.
chr19	52131310	rs61736486	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,22:32:47:0.468:2	./.	./.	./.	./.	0/1:26,29:33:55:0.527:2	./.
chr19	52132668	rs34553740	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,10:32:193:0.052:2	./.	0/1:183,5:30:188:0.027:2
chr19	52132741	rs200210701	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,11:31:60:0.183:2	./.	0/1:145,25:31:170:0.147:2	0/1:149,19:31:168:0.113:2	0/1:156,35:31:191:0.183:2	./.	0/1:155,39:32:194:0.201:2	0/1:174,18:32:193:0.094:2	0/1:153,18:32:172:0.105:2
chr19	52133105	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:186,9:32:195:0.046:2	./.	./.	./.	./.	./.	./.	./.
chr19	52133292	rs149216253	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:124,60:32:185:0.326:2	0/1:124,60:32:184:0.326:2	0/1:67,67:33:136:0.500:2	0/1:180,7:29:189:0.037:2	./.	0/1:129,63:32:192:0.328:2	0/1:147,46:33:195:0.238:2	0/1:140,49:32:190:0.259:2	0/1:136,52:34:191:0.277:2	0/1:145,42:33:187:0.225:2	0/1:93,102:33:195:0.523:2
chr19	52148804	rs885266	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:33:7:0.571:2	./.	0/1:52,52:32:104:0.500:2	0/1:0,58:32:58:1.00:2	0/1:63,48:31:112:0.432:2	./.	0/1:0,111:33:111:1.00:2	0/1:48,39:33:87:0.448:2	0/1:56,49:32:105:0.467:2
chr19	52149165	rs71358847	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,21:31:56:0.375:2	./.	0/1:103,65:32:168:0.387:2	0/1:51,121:32:172:0.703:2	0/1:90,85:32:175:0.486:2	./.	0/1:22,141:33:163:0.865:2	0/1:116,65:32:181:0.359:2	0/1:104,72:32:176:0.409:2
chr19	52149529	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,119:32:197:0.604:2	./.	./.	./.	./.	./.	./.	./.
chr19	52149716	rs201390621	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:136,54:31:190:0.284:2	0/1:116,67:32:184:0.366:2	0/1:97,58:33:155:0.374:2	./.	./.	0/1:141,49:32:190:0.258:2	0/1:150,42:33:192:0.219:2	0/1:147,48:32:196:0.246:2	0/1:141,49:33:191:0.258:2	0/1:141,52:32:194:0.269:2	0/1:81,100:32:182:0.552:2
chr19	52220351	rs11084111	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,11:29:20:0.550:2	./.	./.	./.	./.	./.	./.	./.
chr19	52222552	rs11084112	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:30:9:0.444:2	./.	./.	./.	./.	0/1:5,6:30:11:0.545:2	./.	0/1:1,7:30:8:0.875:2	0/1:3,5:31:8:0.625:2	0/1:0,7:30:7:1.00:2	0/1:0,2:30:2:1.00:2
chr19	52223121	rs7248778	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:27:3:1.00:2	./.	0/1:0,3:30:3:1.00:2	./.
chr19	52249211	rs867228	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,31:28:62:0.500:2	0/1:15,19:28:34:0.559:2	0/1:4,4:32:8:0.500:2	0/1:49,45:30:94:0.479:2	0/1:4,69:30:73:0.945:2	0/1:0,89:29:89:1.00:2	./.	0/1:0,97:30:97:1.00:2	0/1:35,52:29:88:0.598:2	0/1:0,63:30:63:1.00:2	0/1:50,21:27:71:0.296:2
chr19	52249255	rs17849971	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,28:31:57:0.500:2	0/1:15,14:32:29:0.483:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	52249672	rs1042229	A	C,G	.	PASS	AC=5,2;AF=0.238,0.095;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0/2:29:48:0.583:2	0/2:29:22:0.591:2	./.	0/1:32:51:0.392:2	0/1:33:66:0.500:2	./.	./.	0/1:31:59:0.431:2	0/1:33:37:1.00:2	0/1:31:40:0.500:2	./.
chr19	52249680	rs5030880	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,26:31:48:0.542:2	0/1:8,12:31:20:0.600:2	./.	./.	./.	0/1:17,22:30:39:0.564:2	./.	./.	./.	./.	0/1:24,24:29:48:0.500:2
chr19	52249702	rs2070746	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:33:4:1.00:2	0/1:19,21:32:40:0.525:2	./.	./.	0/1:1,54:32:55:0.982:2	./.	./.	0/1:15,19:33:34:0.559:2	./.
chr19	52249760	rs111768566	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,20:31:45:0.444:2	./.	./.
chr19	52249947	rs2070745	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:56,28:33:84:0.333:2	0/1:21,18:31:39:0.462:2	0/1:0,13:32:13:1.00:2	./.	0/1:0,86:32:86:1.00:2	./.	./.	0/1:2,95:32:97:0.979:2	0/1:1,90:33:91:0.989:2	0/1:0,74:32:74:1.00:2	./.
chr19	52250071	rs61736491	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,88:30:183:0.481:2	./.	./.
chr19	52250216	rs5030878	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,112:32:112:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,9:31:9:1.00:2	0/1:91,70:32:161:0.435:2	0/1:86,54:31:140:0.386:2	0/1:1,133:31:134:0.993:2	0/1:1,121:32:122:0.992:2	0/1:98,79:32:177:0.446:2	0/1:92,89:33:181:0.492:2	0/1:0,112:32:112:1.00:2	0/1:0,130:32:130:1.00:2
chr19	52272090	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:31:195:0.026:2	./.	./.	./.
chr19	52272638	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:183,4:32:188:0.021:2	./.	./.	./.	./.	./.	./.
chr19	52273226	rs17695052	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,12:30:29:0.414:2	./.	./.	./.	./.	./.
chr19	52273257	rs17695064	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,16:30:26:0.615:2	./.	./.	./.	./.	./.
chr19	52327550	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:34:127:0.031:2	./.	./.	./.	./.	./.
chr19	52327784	rs3752125	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,11:30:28:0.393:2	0/1:95,68:30:163:0.417:2	0/1:92,64:30:156:0.410:2	./.	./.	0/1:96,71:30:167:0.425:2	0/1:103,73:31:176:0.415:2	./.	./.
chr19	52328133	rs7254019	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:3,6:31:9:0.667:2	./.	./.	./.	./.	./.	0/1:0,8:29:8:1.00:2	./.	./.	./.	./.
chr19	52328213	rs7253924	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:29:11:0.364:2	0/1:2,3:29:5:0.600:2	./.	0/1:0,10:30:10:1.00:2	0/1:1,7:29:8:0.875:2	0/1:2,6:31:8:0.750:2	./.	./.
chr19	52328510	rs10445582	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:5,6:29:11:0.545:2	0/1:7,3:34:10:0.300:2	./.	./.	./.	./.	0/1:0,17:32:17:1.00:2	./.	./.	./.	./.
chr19	52328537	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:30:41:0.098:2	./.
chr19	52328616	rs8109098	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,11:31:20:0.550:2	0/1:4,4:33:8:0.500:2	./.	0/1:23,18:33:41:0.439:2	0/1:27,7:31:34:0.206:2	./.	0/1:0,26:33:26:1.00:2	0/1:22,18:30:40:0.450:2	0/1:22,12:33:34:0.353:2	./.	./.
chr19	52328895	rs62108958	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,23:32:53:0.434:2	./.	./.	./.	./.
chr19	52329090	rs189720069	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,10:32:23:0.435:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	52329286	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,2:36:7:0.286:2	./.	./.	./.	./.	./.	./.	./.
chr19	52376040	rs10407707	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:35,19:30:55:0.352:2	0/1:20,12:31:32:0.375:2	./.	./.	./.	./.	0/1:33,19:31:52:0.365:2	./.	./.	./.	./.
chr19	52376119	rs10407911	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:74,17:32:91:0.187:2	0/1:40,15:30:55:0.273:2	./.	./.	./.	./.	0/1:68,22:31:90:0.244:2	./.	./.	./.	./.
chr19	52376126	rs10407547	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:76,17:30:93:0.183:2	0/1:43,14:31:57:0.246:2	./.	./.	./.	./.	0/1:68,22:31:90:0.244:2	./.	./.	./.	./.
chr19	52376172	rs9807853	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:71,35:32:106:0.330:2	0/1:36,31:32:67:0.463:2	./.	./.	./.	./.	0/1:65,31:32:96:0.323:2	./.	./.	./.	./.
chr19	52376207	rs9807842	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:56,38:31:96:0.404:2	0/1:33,34:32:67:0.507:2	./.	./.	./.	./.	0/1:57,29:32:86:0.337:2	./.	./.	./.	./.
chr19	52376226	rs9807840	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:44,37:33:81:0.457:2	0/1:30,35:32:65:0.538:2	./.	./.	./.	./.	0/1:54,37:32:91:0.407:2	./.	./.	./.	./.
chr19	52376434	rs34295271	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:34,26:32:60:0.433:2	0/1:23,17:32:40:0.425:2	./.	./.	./.	./.	0/1:29,23:33:52:0.442:2	./.	./.	./.	./.
chr19	52376448	rs9807843	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:34,30:30:64:0.469:2	0/1:20,17:29:37:0.459:2	./.	./.	./.	./.	0/1:25,18:30:43:0.419:2	./.	./.	./.	./.
chr19	52376507	rs2288868	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,67:31:67:1.00:2	0/1:0,27:30:27:1.00:2	./.	0/1:38,29:30:67:0.433:2	0/1:43,31:29:74:0.419:2	./.	0/1:0,39:30:39:1.00:2	0/1:41,36:30:77:0.468:2	0/1:36,25:30:61:0.410:2	./.	./.
chr19	52376952	rs8107969	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,27:31:27:1.00:2	0/1:0,21:32:21:1.00:2	./.	0/1:20,15:30:35:0.429:2	0/1:12,15:31:27:0.556:2	./.	0/1:1,17:30:18:0.944:2	0/1:22,17:29:39:0.436:2	0/1:22,15:32:37:0.405:2	./.	./.
chr19	52383556	rs8110546	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:24,24:31:48:0.500:2	0/1:23,12:31:35:0.343:2	./.	./.	./.	./.	0/1:48,22:30:70:0.314:2	./.	./.	./.	./.
chr19	52383569	rs8110461	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:32,32:33:64:0.500:2	0/1:25,13:32:38:0.342:2	./.	./.	./.	./.	0/1:55,29:32:84:0.345:2	./.	./.	./.	./.
chr19	52383649	rs8111551	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:35,37:31:72:0.514:2	0/1:31,14:32:45:0.311:2	./.	./.	./.	./.	0/1:43,31:32:74:0.419:2	./.	./.	./.	./.
chr19	52393984	rs1433083	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:54,61:32:115:0.530:2	0/1:35,31:32:66:0.470:2	./.	./.	./.	./.	0/1:66,49:31:115:0.426:2	./.	./.	./.	./.
chr19	52400223	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.
chr19	52447624	rs33998555	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,13:32:33:0.394:2	0/1:16,10:32:26:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	52448669	rs11880193	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:76,40:32:116:0.345:2	0/1:42,42:32:84:0.500:2	./.	0/1:78,66:33:144:0.458:2	./.	./.	0/1:106,51:32:157:0.325:2	0/1:118,77:32:195:0.395:2	0/1:94,64:32:158:0.405:2	./.	./.
chr19	52468136	rs4988337	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,13:29:42:0.310:2	./.	./.	./.	./.	./.	./.
chr19	52468278	rs4988336	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:51,40:32:91:0.440:2	0/1:34,31:31:65:0.477:2	0/1:5,9:31:14:0.643:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	52468292	rs4986771	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:48,47:31:95:0.495:2	0/1:30,35:31:65:0.538:2	./.	./.	./.	./.	./.	0/1:55,39:31:94:0.415:2	./.	./.	./.
chr19	52468551	rs4986772	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:41,52:33:93:0.559:2	0/1:30,21:32:51:0.412:2	./.	./.	./.	./.	./.	0/1:44,43:32:87:0.494:2	./.	./.	./.
chr19	52471872	rs2278420	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:41,39:29:80:0.488:2	0/1:18,22:29:40:0.550:2	0/1:1,5:30:6:0.833:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	52472295	rs4986773	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:29:69:1.00:2	0/1:1,53:29:54:0.981:2	0/1:6,7:30:13:0.538:2	0/1:57,68:29:125:0.544:2	./.	./.	0/1:61,68:29:129:0.527:2	0/1:69,59:28:128:0.461:2	0/1:40,52:29:92:0.565:2	./.	./.
chr19	52496149	rs16983353	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,84:33:85:0.988:2	0/1:1,53:33:54:0.981:2	0/1:8,3:32:11:0.273:2	0/1:50,48:33:98:0.490:2	./.	0/1:65,20:32:85:0.235:2	0/1:74,42:32:116:0.362:2	0/1:63,43:32:106:0.406:2	0/1:53,45:33:98:0.459:2	./.	./.
chr19	52497250	rs1978717	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,73:32:75:0.973:2	0/1:0,41:32:41:1.00:2	0/1:4,10:32:14:0.714:2	0/1:37,39:31:76:0.513:2	./.	0/1:56,40:30:96:0.417:2	0/1:44,40:32:84:0.476:2	0/1:48,45:31:93:0.484:2	0/1:50,61:32:111:0.550:2	./.	./.
chr19	52497442	rs367901013	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,27:31:75:0.360:2	./.	./.	./.	./.	./.
chr19	52497943	rs10500311	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,53:32:53:1.00:2	0/1:1,33:32:34:0.971:2	./.	0/1:32,30:32:62:0.484:2	./.	0/1:42,27:30:69:0.391:2	0/1:30,28:32:58:0.483:2	0/1:22,31:32:53:0.585:2	0/1:29,16:32:45:0.356:2	./.	./.
chr19	52505463	rs151263298	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,68:31:124:0.548:2	./.	./.	./.	./.	0/1:55,50:32:105:0.476:2
chr19	52519224	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:31:179:0.022:2	./.	./.	./.	./.
chr19	52519608	rs8104890	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:86,65:32:152:0.430:2	0/1:55,48:32:103:0.466:2	0/1:16,14:31:30:0.467:2	0/1:91,71:31:162:0.438:2	./.	./.	0/1:107,73:32:180:0.406:2	./.	0/1:105,86:33:191:0.450:2	./.	./.
chr19	52520372	rs45596739	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,50:31:108:0.463:2	./.	./.	./.	./.	./.	./.	./.
chr19	52520518	rs73934728	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:43,49:32:92:0.533:2	0/1:21,24:32:45:0.533:2	0/1:5,6:32:11:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	52520607	rs61574510	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,22:32:34:0.647:2	0/1:17,8:33:25:0.320:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	52521296	rs9636139	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,40:31:103:0.388:2	0/1:42,31:32:73:0.425:2	0/1:8,3:29:11:0.273:2	0/1:85,49:31:134:0.366:2	./.	./.	0/1:72,41:31:113:0.363:2	./.	0/1:81,70:32:151:0.464:2	./.	./.
chr19	52528944	rs7343140	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:27,21:32:48:0.438:2	0/1:21,16:32:37:0.432:2	0/1:5,6:31:11:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	52537334	rs117633649	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,39:31:70:0.557:2	./.	./.	./.
chr19	52537576	rs11666149	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:52,40:31:92:0.435:2	0/1:27,16:29:43:0.372:2	./.	0/1:70,63:29:133:0.474:2	0/1:38,36:29:74:0.486:2	./.	0/1:62,37:30:99:0.374:2	./.	0/1:1,85:30:86:0.988:2	./.	./.
chr19	52538237	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:34:78:0.051:2	./.	./.
chr19	52538278	rs6509616	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:26,18:29:44:0.409:2	0/1:6,19:30:25:0.760:2	0/1:5,3:30:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	52538303	rs150578448	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,15:30:39:0.385:2
chr19	52538428	rs11881700	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,14:33:25:0.560:2	0/1:13,13:33:26:0.500:2	./.	0/1:9,11:34:20:0.550:2	./.	0/1:0,29:32:29:1.00:2	./.	./.
chr19	52568422	rs61743893	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:64,44:32:108:0.407:2	0/1:37,32:32:69:0.464:2	0/1:3,8:26:11:0.727:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	52568970	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	52570565	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,15:33:50:0.300:2	./.
chr19	52570583	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:32:87:0.046:2	./.	./.	./.
chr19	52570714	rs16983412	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,40:32:77:0.519:2	0/1:38,24:31:62:0.387:2	./.	0/1:32,15:33:47:0.319:2	./.	0/1:0,83:33:83:1.00:2	./.	./.
chr19	52570783	rs16983414	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,63:33:128:0.492:2	0/1:66,52:32:118:0.441:2	./.	0/1:63,40:33:103:0.388:2	./.	0/1:0,151:34:151:1.00:2	./.	./.
chr19	52618506	rs45591734	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,21:32:51:0.412:2	0/1:18,7:29:25:0.280:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	52619065	rs3764537	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:69,63:30:132:0.477:2	0/1:47,24:29:71:0.338:2	0/1:12,12:30:24:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	52619349	rs115318826	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,68:30:139:0.489:2	0/1:53,47:30:100:0.470:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	52620269	rs35582075	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,39:31:40:0.975:2	0/1:28,10:30:38:0.263:2	./.	./.	./.	./.
chr19	52658354	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:121,5:32:126:0.040:2	./.	./.	./.	./.	./.	./.	./.
chr19	52659872	rs61739527	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:31:15:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	52659991	rs1821278	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,10:33:24:0.417:2	0/1:11,13:32:24:0.542:2	./.	./.	./.
chr19	52660076	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:29:69:0.058:2	./.	./.	./.
chr19	52660279	rs1366245	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,13:31:23:0.565:2	./.	./.	./.	0/1:37,27:30:64:0.422:2	0/1:49,43:30:92:0.467:2	./.	./.	./.
chr19	52660783	rs17696575	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:33:13:0.385:2	./.	./.	./.	0/1:69,69:33:139:0.500:2	0/1:32,44:32:77:0.579:2	./.	./.	./.
chr19	52714602	rs11537700	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,31:30:73:0.437:2	./.	./.	./.	./.
chr19	52723071	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:27:68:0.059:2	./.	./.	./.	0/1:42,5:22:47:0.106:2	./.
chr19	52728981	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:32:123:0.033:2	./.	./.	./.
chr19	52729030	rs10413435	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:33,34:32:67:0.507:2	0/1:19,21:32:40:0.525:2	./.	./.	./.	./.	./.	0/1:68,51:32:119:0.429:2	0/1:50,37:32:87:0.425:2	0/1:58,33:32:92:0.363:2	./.
chr19	52772897	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,11:32:44:0.250:2	./.	./.	./.	./.	./.	./.
chr19	52786572	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:31:120:0.033:2	./.
chr19	52825032	rs13343641	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,14:32:21:0.667:2	0/1:64,60:32:124:0.484:2	./.	0/1:55,33:32:88:0.375:2	0/1:41,26:33:67:0.388:2	./.	./.	./.	0/1:67,74:32:142:0.525:2
chr19	52825235	rs8102373	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,24:31:49:0.490:2	0/1:19,10:31:29:0.345:2	0/1:6,5:26:11:0.455:2	0/1:1,36:31:37:0.973:2	0/1:0,23:30:23:1.00:2	0/1:0,33:31:33:1.00:2	0/1:21,21:28:42:0.500:2	0/1:32,20:30:52:0.385:2	0/1:23,21:29:45:0.477:2	0/1:1,29:30:30:0.967:2	0/1:0,55:30:55:1.00:2
chr19	52856955	rs1961205	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.	./.	0/1:12,18:31:30:0.600:2	0/1:0,12:31:12:1.00:2	0/1:24,7:31:31:0.226:2	0/1:18,11:33:29:0.379:2	./.	0/1:29,12:33:41:0.293:2
chr19	52869022	rs2241586	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:30:20:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,2:32:2:1.00:2	0/1:1,20:30:21:0.952:2	0/1:0,14:31:14:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,15:31:16:1.00:2	0/1:1,33:30:34:0.971:2	0/1:20,26:32:46:0.565:2	0/1:0,21:30:21:1.00:2	0/1:0,43:30:43:1.00:2
chr19	52869054	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,10:33:24:0.417:2	./.
chr19	52869278	rs321937	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,97:32:99:0.980:2	0/1:0,50:32:50:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,133:32:133:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,80:33:80:1.00:2	0/1:1,119:32:120:0.992:2	0/1:122,62:33:185:0.337:2	0/1:0,88:32:88:1.00:2	0/1:0,111:33:111:1.00:2
chr19	52869312	rs162120	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,95:30:97:0.990:2	0/1:0,46:29:46:1.00:2	0/1:1,12:30:13:0.923:2	0/1:0,148:29:148:1.00:2	0/1:0,61:29:61:1.00:2	0/1:0,124:29:124:1.00:2	0/1:0,82:30:82:1.00:2	0/1:85,66:30:152:0.437:2	0/1:123,67:30:190:0.353:2	0/1:56,40:29:96:0.417:2	0/1:0,130:30:130:1.00:2
chr19	52869431	rs142300380	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,36:33:56:0.643:2	./.	0/1:13,31:31:44:0.705:2	./.
chr19	52869534	rs162119	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,19:32:19:1.00:2	0/1:1,6:33:7:0.857:2	0/1:0,71:32:71:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,82:32:82:1.00:2	0/1:2,42:33:44:0.955:2	0/1:0,56:32:56:1.00:2	0/1:30,27:33:57:0.474:2	0/1:0,45:33:45:1.00:2	0/1:0,69:33:69:1.00:2
chr19	52869648	rs139516691	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,10:32:23:0.435:2	./.	0/1:9,13:34:22:0.591:2	./.
chr19	52869997	rs141782780	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,15:32:44:0.341:2	./.	0/1:9,11:32:20:0.550:2	./.
chr19	52876385	rs14048	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,41:32:91:0.451:2	0/1:92,46:33:138:0.333:2
chr19	52877592	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,7:32:101:0.070:2
chr19	52887282	rs324125	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,11:30:38:0.297:2	./.	./.	./.	./.	0/1:26,27:33:53:0.509:2	0/1:0,83:32:83:1.00:2
chr19	52887427	rs8104808	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,63:32:64:0.984:2	0/1:1,41:32:42:0.976:2	./.	0/1:3,98:32:101:0.970:2	0/1:20,25:33:45:0.556:2	0/1:49,42:32:91:0.462:2	0/1:28,40:33:68:0.588:2	0/1:0,82:32:82:1.00:2	0/1:57,48:32:105:0.457:2	0/1:27,54:32:81:0.667:2	./.
chr19	52887437	rs8104812	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,76:33:76:1.00:2	0/1:0,43:32:43:1.00:2	./.	0/1:4,113:33:117:0.966:2	0/1:25,30:32:55:0.545:2	0/1:54,48:32:102:0.471:2	0/1:39,48:32:87:0.552:2	0/1:0,92:32:92:1.00:2	0/1:66,61:34:127:0.480:2	0/1:30,58:33:88:0.659:2	./.
chr19	52887585	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,22:33:53:0.415:2	./.	./.
chr19	52887904	rs2042913	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,25:30:25:1.00:2	0/1:0,36:29:36:1.00:2	./.	0/1:1,52:28:53:0.981:2	0/1:18,28:30:46:0.609:2	0/1:25,26:29:51:0.510:2	0/1:24,13:29:37:0.351:2	0/1:0,46:29:46:1.00:2	0/1:28,31:30:59:0.525:2	0/1:31,10:30:41:0.244:2	./.
chr19	52888042	rs75507701	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:32:13:0.308:2	./.	0/1:23,3:30:26:0.115:2	./.	0/1:10,3:32:13:0.231:2	./.	./.	./.
chr19	52888048	rs324124	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,17:30:22:0.773:2	./.	./.	./.	./.	0/1:7,13:31:20:0.650:2	0/1:0,26:32:26:1.00:2
chr19	52888049	rs75346003	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:5,3:32:8:0.375:2	./.	./.	0/1:7,6:32:13:0.462:2	./.	0/1:23,3:32:26:0.115:2	0/1:17,4:31:21:0.190:2	0/1:10,3:32:13:0.231:2	./.	./.	./.
chr19	52888050	rs76053634	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:5,3:33:8:0.375:2	./.	./.	0/1:7,6:33:13:0.462:2	./.	0/1:23,3:32:26:0.115:2	0/1:17,4:31:21:0.190:2	0/1:10,3:33:13:0.231:2	./.	./.	./.
chr19	52888071	rs12975097	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:12,3:31:15:0.200:2	./.	./.	0/1:18,3:31:21:0.143:2	./.	./.	0/1:33,3:33:36:0.083:2	0/1:11,5:27:16:0.313:2	./.	./.	./.
chr19	52888210	rs56151179	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,37:31:37:1.00:2	0/1:0,26:30:26:1.00:2	./.	0/1:1,41:31:42:0.976:2	0/1:10,14:29:24:0.583:2	0/1:22,13:30:35:0.371:2	0/1:22,19:29:41:0.463:2	0/1:0,38:29:38:1.00:2	0/1:22,16:30:38:0.421:2	0/1:22,12:31:34:0.353:2	./.
chr19	52888245	rs55748277	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,44:33:44:1.00:2	0/1:0,34:32:34:1.00:2	./.	0/1:2,36:32:38:0.947:2	0/1:13,17:31:30:0.567:2	0/1:27,22:32:49:0.449:2	0/1:26,26:31:52:0.500:2	0/1:2,53:32:55:0.964:2	0/1:36,35:33:71:0.493:2	0/1:30,28:33:58:0.483:2	./.
chr19	52937339	rs17780173	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,12:33:27:0.444:2	./.	0/1:1,122:31:123:0.992:2	0/1:111,83:32:194:0.428:2	./.	./.	./.	0/1:98,88:32:186:0.473:2	./.
chr19	52938361	rs11084161	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:32:103:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,6:31:6:1.00:2	0/1:1,105:31:106:0.991:2	0/1:2,69:31:71:0.972:2	0/1:0,115:31:116:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,111:31:111:1.00:2	0/1:1,131:32:132:0.992:2	0/1:0,95:31:95:1.00:2	0/1:0,149:32:149:1.00:2
chr19	52938417	rs11084162	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:32:70:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,96:33:96:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,94:32:94:1.00:2
chr19	52938459	rs11084163	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:31:49:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,29:32:29:1.00:2	0/1:1,43:31:44:0.977:2	0/1:0,31:31:31:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,64:31:64:1.00:2
chr19	52941171	rs1428180	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,107:32:107:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,26:32:26:1.00:2	0/1:86,68:32:154:0.442:2	0/1:0,86:31:86:1.00:2	0/1:0,112:31:112:1.00:2	0/1:1,81:31:82:0.988:2	0/1:1,121:32:122:0.992:2	0/1:0,127:33:127:1.00:2	0/1:0,121:32:122:1.00:2	0/1:3,141:33:144:0.979:2
chr19	52941540	rs1366257	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,2:34:2:1.00:2	0/1:30,16:32:46:0.348:2	0/1:0,23:32:23:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,69:32:69:1.00:2
chr19	52941618	rs1366258	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:33:75:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,9:32:9:1.00:2	0/1:58,56:32:114:0.491:2	0/1:0,76:32:76:1.00:2	0/1:0,107:32:107:1.00:2	0/1:0,99:33:99:1.00:2	0/1:0,106:33:106:1.00:2	0/1:0,108:33:108:1.00:2	0/1:0,73:33:73:1.00:2	0/1:0,113:33:113:1.00:2
chr19	52941847	rs1366259	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:31:67:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,5:31:5:1.00:2	0/1:26,19:31:45:0.422:2	0/1:0,79:31:80:1.00:2	0/1:0,88:31:88:1.00:2	0/1:1,61:31:62:0.984:2	0/1:0,67:31:67:1.00:2	0/1:0,64:32:64:1.00:2	0/1:1,88:32:89:0.989:2	0/1:0,90:31:90:1.00:2
chr19	52942159	rs2608497	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:32:26:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,3:33:3:1.00:2	0/1:17,15:32:32:0.469:2	0/1:0,29:32:29:1.00:2	0/1:0,32:32:32:1.00:2	0/1:1,15:33:16:0.938:2	0/1:0,35:32:35:1.00:2	0/1:0,30:34:30:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,29:32:29:1.00:2
chr19	52942340	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:27:64:0.063:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	52942445	rs2608498	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:31:65:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,58:30:58:1.00:2	0/1:0,113:30:113:1.00:2	0/1:0,76:31:76:1.00:2	0/1:0,95:31:96:1.00:2	0/1:1,100:31:101:0.990:2
chr19	52942495	rs2561001	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:32:67:1.00:2	0/1:2,38:32:40:0.950:2	0/1:0,5:31:5:1.00:2	0/1:34,34:32:68:0.500:2	0/1:0,34:31:34:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,68:32:68:1.00:2	0/1:2,65:31:67:0.970:2
chr19	53014346	rs161931	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,29:31:73:0.397:2	0/1:21,24:32:45:0.533:2	0/1:7,10:32:17:0.588:2	0/1:0,50:31:50:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,50:32:50:1.00:2	0/1:19,25:32:44:0.568:2	./.
chr19	53014540	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:101,4:30:105:0.038:2	./.	0/1:120,5:26:125:0.040:2	./.	./.	./.	./.
chr19	53014551	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:30:92:0.043:2
chr19	53014593	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:32:155:0.026:2	./.	./.	./.	./.	./.
chr19	53014624	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:137,4:32:141:0.028:2	./.	./.	./.	./.	./.	0/1:104,4:33:108:0.037:2	./.
chr19	53014635	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,5:28:114:0.044:2	./.
chr19	53014639	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:32:110:0.036:2	./.
chr19	53014787	rs35356792	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,29:32:58:0.500:2	./.	./.	./.	./.	./.
chr19	53015384	rs4802965	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,34:31:60:0.567:2	0/1:16,24:32:40:0.600:2	./.	./.	./.	0/1:26,29:32:55:0.527:2	./.	./.	./.	./.	./.
chr19	53050789	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,5:26:58:0.086:2	./.	./.	./.	./.	./.	./.	./.
chr19	53056864	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,6:33:96:0.063:2
chr19	53056925	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,3:32:12:0.250:2	0/1:139,11:33:150:0.073:2	0/1:111,15:32:126:0.119:2	./.	0/1:93,6:33:99:0.061:2	./.	./.	./.	./.
chr19	53056953	rs329965	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,5:31:18:0.278:2	./.	0/1:84,48:30:132:0.364:2	0/1:109,50:31:159:0.314:2	0/1:84,32:31:116:0.276:2	0/1:25,131:31:156:0.840:2	0/1:18,120:31:138:0.870:2	0/1:98,76:31:174:0.437:2	./.
chr19	53056992	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:139,10:30:149:0.067:2	0/1:79,6:31:85:0.071:2	0/1:12,4:30:16:0.250:2	0/1:128,9:31:137:0.066:2	0/1:90,9:30:99:0.091:2	0/1:153,12:29:165:0.073:2	0/1:99,15:30:114:0.132:2	0/1:149,11:30:160:0.069:2	0/1:120,9:31:129:0.070:2	0/1:128,21:30:149:0.141:2	0/1:127,13:31:141:0.093:2
chr19	53057316	rs201467242	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,11:31:34:0.324:2	./.
chr19	53057479	rs61746334	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,6:30:22:0.273:2	./.	./.	./.	./.	./.
chr19	53057795	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:33:85:0.047:2	./.
chr19	53058710	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,3:33:40:0.075:2	./.	./.	./.	./.	./.	./.	./.
chr19	53077411	rs162832	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,23:33:23:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,15:33:15:1.00:2	0/1:17,12:33:29:0.414:2	0/1:0,50:34:50:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,33:33:33:1.00:2
chr19	53085659	rs366793	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,6:33:9:0.667:2	0/1:63,79:31:142:0.556:2	0/1:0,106:31:106:1.00:2	0/1:0,132:30:132:1.00:2	0/1:0,109:31:111:1.00:2	0/1:87,67:32:154:0.435:2	0/1:1,153:32:154:0.994:2	0/1:0,149:32:149:1.00:2	0/1:106,79:32:185:0.427:2
chr19	53085813	rs3745101	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:32:9:0.333:2	./.	./.	./.	0/1:27,22:32:49:0.449:2	./.	0/1:35,36:33:71:0.507:2	0/1:37,29:32:66:0.439:2	0/1:51,51:31:102:0.500:2
chr19	53086032	rs427127	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,33:31:88:0.375:2	./.	./.	./.	./.
chr19	53086124	rs373554	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,4:31:18:0.222:2	0/1:52,56:32:108:0.519:2	0/1:0,125:32:125:1.00:2	0/1:3,105:32:108:0.972:2	0/1:0,105:32:105:1.00:2	0/1:57,63:32:120:0.525:2	0/1:0,128:33:129:1.00:2	0/1:0,102:33:102:1.00:2	0/1:51,50:33:101:0.495:2
chr19	53086267	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,3:32:37:0.081:2	./.	./.	./.	./.	0/1:56,4:33:60:0.067:2	./.
chr19	53086297	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,5:29:67:0.075:2	./.
chr19	53086356	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,6:28:188:0.032:2
chr19	53086362	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:126,4:31:130:0.031:2	./.	./.	./.	./.	./.	./.
chr19	53086485	rs62117247	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:127,34:30:161:0.211:2	0/1:137,47:29:184:0.255:2	./.	./.	./.	./.	./.
chr19	53086598	rs3745102	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:32:12:0.667:2	./.	0/1:74,4:31:79:0.051:2	./.	0/1:39,32:32:71:0.451:2	./.	0/1:74,51:33:125:0.408:2	0/1:56,37:32:93:0.398:2	0/1:68,75:33:143:0.524:2
chr19	53116643	rs11545619	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:53,42:30:95:0.442:2	0/1:21,16:29:37:0.432:2	./.	./.	0/1:38,50:29:88:0.568:2	./.	./.	./.	./.	./.	0/1:54,32:30:86:0.372:2
chr19	53116703	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,5:29:111:0.045:2	./.	./.
chr19	53116801	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:30:106:0.038:2
chr19	53116855	rs7247359	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,7:32:100:0.070:2	0/1:100,5:31:105:0.048:2	./.	0/1:80,6:30:86:0.070:2	./.
chr19	53116856	rs199873537	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,5:31:99:0.051:2	0/1:101,5:30:106:0.047:2	./.	0/1:80,5:32:85:0.059:2	./.
chr19	53116865	rs141749555	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,5:33:90:0.056:2	0/1:93,5:33:98:0.051:2	./.	0/1:81,5:33:86:0.058:2	./.
chr19	53116885	rs7247257	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,7:31:110:0.064:2	0/1:80,4:30:84:0.048:2	0/1:119,4:31:123:0.033:2	0/1:83,4:32:87:0.046:2	./.	./.	0/1:77,4:31:81:0.049:2	./.
chr19	53116888	rs7247258	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,7:31:111:0.063:2	0/1:76,5:30:81:0.062:2	./.	0/1:77,4:32:81:0.049:2	./.	./.	0/1:77,4:32:81:0.049:2	./.
chr19	53116939	rs78207921	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,20:30:52:0.385:2	0/1:48,22:30:70:0.314:2	./.	0/1:43,11:30:54:0.204:2	./.
chr19	53116940	rs75857698	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,20:30:52:0.385:2	0/1:49,22:31:71:0.310:2	./.	0/1:41,11:30:52:0.212:2	./.
chr19	53116949	rs113015820	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,17:33:50:0.340:2	0/1:45,17:33:62:0.274:2	./.	0/1:40,8:34:48:0.167:2	./.
chr19	53116969	rs7247690	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:31:43:0.093:2	./.	./.	./.
chr19	53116972	rs7247691	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:33:43:0.093:2	./.	./.	./.
chr19	53117017	rs7248435	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,11:33:50:0.220:2	0/1:26,15:34:41:0.366:2	./.	0/1:21,9:33:30:0.300:2	./.
chr19	53117137	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,29:32:59:0.492:2	./.
chr19	53117531	rs1056185	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,116:32:120:0.967:2	0/1:1,76:32:77:0.987:2	./.	0/1:0,126:32:126:1.00:2	0/1:43,34:31:77:0.442:2	./.	0/1:53,55:32:108:0.509:2	0/1:0,119:31:119:1.00:2	0/1:70,65:33:135:0.481:2	0/1:0,94:32:94:1.00:2	0/1:57,74:32:131:0.565:2
chr19	53117785	rs116270618	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,4:32:49:0.082:2	./.	./.	./.	./.	./.	./.	./.
chr19	53117809	rs10406458	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,49:29:50:0.980:2	0/1:0,42:31:42:1.00:2	./.	0/1:1,53:29:54:0.981:2	0/1:20,21:30:41:0.512:2	./.	0/1:30,18:29:48:0.375:2	0/1:0,43:30:43:1.00:2	0/1:27,23:30:50:0.460:2	0/1:0,55:29:55:1.00:2	0/1:28,43:30:71:0.606:2
chr19	53209381	rs55821820	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,61:32:107:0.570:2	./.	./.	0/1:31,24:32:55:0.436:2	./.	./.	./.	0/1:53,55:33:108:0.509:2
chr19	53209399	rs56100304	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,62:31:114:0.544:2	./.	./.	0/1:34,26:31:60:0.433:2	./.	./.	./.	0/1:56,50:32:106:0.472:2
chr19	53209553	rs4085566	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,112:32:116:0.966:2	0/1:2,62:31:64:0.969:2	0/1:10,11:31:21:0.524:2	0/1:66,53:31:119:0.445:2	./.	0/1:68,60:30:128:0.469:2	0/1:62,41:31:103:0.398:2	0/1:83,56:31:139:0.403:2	0/1:65,73:32:138:0.529:2	./.	0/1:90,55:31:145:0.379:2
chr19	53209554	rs4085565	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,112:32:116:0.966:2	0/1:2,62:31:64:0.969:2	0/1:11,11:31:22:0.500:2	0/1:64,53:31:117:0.453:2	./.	0/1:67,61:31:128:0.477:2	0/1:63,40:31:103:0.388:2	0/1:83,56:31:139:0.403:2	0/1:65,73:32:138:0.529:2	./.	0/1:92,55:31:147:0.374:2
chr19	53209801	rs144112352	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,53:32:115:0.461:2	./.	./.	./.	./.	./.
chr19	53210028	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:31:74:0.054:2	./.	./.	./.	./.
chr19	53217379	rs146583693	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,15:33:30:0.500:2	./.	./.	./.	0/1:35,37:34:72:0.514:2
chr19	53268866	rs201797333	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,5:25:140:0.036:2	./.	./.	./.	./.	./.
chr19	53269206	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,5:25:103:0.049:2	0/1:75,7:29:82:0.085:2	0/1:97,4:30:101:0.040:2	./.	./.	0/1:114,4:32:118:0.034:2
chr19	53269207	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,5:28:103:0.049:2	0/1:79,4:32:83:0.048:2	0/1:98,4:31:102:0.039:2	./.	./.	0/1:114,4:32:118:0.034:2
chr19	53270384	rs1820128	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,109:30:109:1.00:2	0/1:1,71:29:72:0.986:2	0/1:0,16:30:16:1.00:2	0/1:2,162:30:164:0.988:2	0/1:1,96:30:97:0.990:2	0/1:95,65:29:160:0.406:2	0/1:0,125:30:125:1.00:2	0/1:3,132:30:135:0.978:2	0/1:0,168:31:168:1.00:2	0/1:0,140:31:140:1.00:2	0/1:0,182:30:182:1.00:2
chr19	53270432	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,13:31:186:0.070:2	./.	./.
chr19	53270460	rs4614842	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,6:32:10:0.600:2	0/1:65,82:32:147:0.558:2	0/1:47,37:32:84:0.440:2	./.	0/1:53,38:33:91:0.418:2	./.	./.	./.	./.
chr19	53270650	rs138980216	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,26:32:50:0.520:2	./.	./.
chr19	53302942	rs9917044	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:32:70:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,55:31:55:1.00:2	0/1:45,36:31:81:0.444:2	0/1:0,91:32:91:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,95:31:95:1.00:2
chr19	53302984	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:31:89:0.045:2	./.	./.	./.	./.	./.
chr19	53302985	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:31:87:0.046:2	./.	./.	./.	./.	./.
chr19	53303148	rs79157402	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:156,5:32:161:0.031:2	./.	0/1:144,7:31:151:0.046:2	0/1:90,4:29:94:0.043:2	./.	./.	./.	0/1:145,7:32:152:0.046:2
chr19	53303182	rs142391659	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:87,9:32:96:0.094:2	0/1:68,5:31:73:0.068:2	./.	./.	0/1:98,11:31:109:0.101:2	./.	./.	./.	./.	./.	./.
chr19	53303332	rs142442328	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:46,4:33:50:0.080:2	./.	./.	./.	./.	0/1:74,11:32:85:0.129:2	0/1:95,5:32:100:0.050:2	0/1:118,6:33:124:0.048:2	./.	./.
chr19	53303527	rs8107444	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:30:64:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,68:30:68:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,42:30:42:1.00:2	0/1:34,36:30:70:0.514:2	0/1:0,73:31:73:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,73:29:73:1.00:2
chr19	53303656	rs150655137	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,32:32:77:0.416:2	./.
chr19	53303705	rs10417163	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:33:74:1.00:2	0/1:0,75:33:75:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,77:33:77:1.00:2	0/1:24,38:32:62:0.613:2	0/1:42,47:32:89:0.528:2	0/1:1,103:33:104:0.990:2	0/1:45,42:32:87:0.483:2	0/1:1,95:33:97:0.990:2	0/1:3,108:32:111:0.973:2	0/1:2,128:33:130:0.985:2
chr19	53303745	rs12462522	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,19:32:51:0.373:2	./.	./.	./.	./.	./.	./.
chr19	53303890	rs57548937	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,18:30:33:0.545:2	./.	./.	./.	./.	./.
chr19	53304563	rs13382164	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,47:33:121:0.388:2	./.	./.	./.	./.	./.
chr19	53304611	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,5:34:64:0.078:2	./.	./.	0/1:53,5:32:58:0.086:2	./.	./.	./.	./.	./.	./.
chr19	53304627	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,5:32:63:0.079:2	./.	./.	./.	./.	./.	./.
chr19	53304632	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,5:32:62:0.081:2	./.	./.	./.	./.	./.	./.
chr19	53344051	rs112227284	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:49,50:32:99:0.505:2	0/1:36,15:31:51:0.294:2	0/1:2,6:32:8:0.750:2	./.	0/1:41,26:32:67:0.388:2	./.	./.	./.	./.	./.	./.
chr19	53344118	rs10419826	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:54,24:29:78:0.308:2	0/1:19,22:30:41:0.537:2	0/1:3,3:29:6:0.500:2	0/1:58,30:28:88:0.341:2	0/1:30,18:29:48:0.375:2	./.	0/1:50,21:29:71:0.296:2	0/1:50,28:28:78:0.359:2	0/1:41,15:30:56:0.268:2	./.	0/1:58,37:28:95:0.389:2
chr19	53344201	rs140223089	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,5:29:111:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	53344426	rs12462929	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:38,25:30:63:0.397:2	0/1:16,17:29:33:0.515:2	0/1:2,7:29:9:0.778:2	./.	0/1:16,24:28:40:0.600:2	./.	./.	./.	./.	./.	./.
chr19	53344701	rs10420793	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:27,28:32:55:0.509:2	0/1:18,13:33:31:0.419:2	0/1:2,2:34:4:0.500:2	./.	0/1:24,17:31:41:0.415:2	./.	./.	./.	./.	./.	./.
chr19	53345060	rs61747364	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:54,20:34:74:0.270:2	0/1:28,13:32:41:0.317:2	0/1:5,4:32:9:0.444:2	./.	0/1:17,7:32:25:0.292:2	./.	./.	./.	./.	./.	./.
chr19	53345076	rs61747369	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:55,19:33:74:0.257:2	0/1:30,14:33:44:0.318:2	0/1:4,4:33:8:0.500:2	./.	0/1:22,8:32:30:0.267:2	./.	./.	./.	./.	./.	./.
chr19	53345095	rs61729939	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:49,21:32:70:0.300:2	0/1:32,14:32:46:0.304:2	./.	./.	0/1:28,11:32:39:0.282:2	./.	./.	0/1:42,46:33:88:0.523:2	./.	./.	0/1:77,50:32:127:0.394:2
chr19	53345110	rs61729942	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:47,31:29:78:0.397:2	0/1:32,12:27:44:0.273:2	./.	./.	0/1:40,16:29:56:0.286:2	./.	./.	./.	./.	./.	./.
chr19	53345176	rs61732713	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:51,78:32:129:0.605:2	0/1:36,26:29:62:0.419:2	0/1:15,6:32:21:0.286:2	./.	0/1:69,35:30:104:0.337:2	./.	./.	./.	./.	./.	./.
chr19	53345321	rs8100893	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,76:30:169:0.450:2	./.	./.	0/1:60,56:29:116:0.483:2	0/1:107,80:29:187:0.428:2	0/1:78,73:31:151:0.483:2	./.	0/1:98,69:30:167:0.413:2
chr19	53384185	rs6509701	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,20:31:57:0.351:2	0/1:31,28:31:59:0.475:2	0/1:8,7:32:15:0.467:2	0/1:26,23:31:49:0.469:2	0/1:0,44:31:44:1.00:2	0/1:0,72:31:72:1.00:2	0/1:35,22:32:57:0.386:2	0/1:44,19:31:64:0.302:2	0/1:0,64:32:64:1.00:2	0/1:0,42:32:42:1.00:2	0/1:51,31:31:82:0.378:2
chr19	53384197	rs61745485	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,20:31:66:0.303:2	./.	0/1:26,23:33:49:0.469:2	./.
chr19	53385036	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,4:32:120:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr19	53385056	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:32:120:0.033:2	./.	./.	./.	./.	./.
chr19	53432351	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,4:34:112:0.036:2	./.	./.	0/1:66,4:34:70:0.057:2	./.	./.	./.	./.
chr19	53432384	rs202010495	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,5:31:115:0.043:2	./.	./.	0/1:85,5:32:90:0.056:2	./.	./.	./.	./.
chr19	53453777	rs8110062	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,60:31:60:1.00:2	0/1:23,9:32:32:0.281:2	0/1:28,19:31:47:0.404:2	0/1:28,31:33:59:0.525:2	0/1:1,36:32:37:0.973:2	./.
chr19	53454387	rs57088011	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,14:32:30:0.483:2	./.	./.	./.	./.	./.
chr19	53454543	rs11084210	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,32:32:75:0.427:2	./.	0/1:57,39:33:96:0.406:2	./.	./.
chr19	53454555	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:32:125:0.032:2	./.	./.	./.	./.	./.
chr19	53454710	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,4:34:85:0.047:2	./.	./.	./.	./.	./.	./.	./.
chr19	53454761	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,4:32:93:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr19	53454789	rs12459008	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,84:31:84:1.00:2	0/1:32,24:32:56:0.429:2	0/1:56,27:31:83:0.325:2	0/1:48,41:33:89:0.461:2	0/1:0,87:32:87:1.00:2	./.
chr19	53572059	rs78382850	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,17:32:39:0.436:2	./.	0/1:21,19:32:40:0.475:2	./.	./.	./.
chr19	53572494	rs11665677	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,33:32:65:0.508:2	0/1:16,22:30:38:0.579:2	./.	./.	./.	0/1:0,68:31:68:1.00:2	./.	0/1:28,28:31:56:0.500:2	0/1:41,31:32:72:0.431:2	0/1:27,27:32:54:0.500:2	./.
chr19	53572887	rs61732582	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,22:31:54:0.407:2	./.	./.	./.	./.	./.	./.
chr19	53572917	rs10407463	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,34:31:70:0.486:2	0/1:31,24:32:55:0.436:2	./.	./.	./.	0/1:64,28:30:92:0.304:2	./.	0/1:45,40:31:85:0.471:2	./.	./.	./.
chr19	53577419	rs8105668	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,34:29:77:0.442:2	0/1:32,27:29:59:0.458:2	0/1:0,17:29:17:1.00:2	0/1:62,59:29:121:0.488:2	0/1:67,39:29:106:0.368:2	0/1:0,122:29:122:1.00:2	0/1:87,42:29:129:0.326:2	0/1:53,55:29:108:0.509:2	0/1:76,70:30:146:0.479:2	0/1:0,111:30:111:1.00:2	0/1:58,62:30:121:0.517:2
chr19	53578422	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:33:70:0.057:2	./.	./.	./.	./.	./.
chr19	53611802	rs61733666	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,7:33:17:0.412:2	0/1:83,67:32:150:0.447:2	./.	./.	./.	./.	./.	./.	./.
chr19	53612055	rs10410030	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:16,27:29:43:0.628:2	0/1:12,9:28:21:0.429:2	./.	0/1:10,24:30:34:0.706:2	./.	./.	./.	0/1:12,7:28:19:0.368:2	./.	./.	./.
chr19	53612311	rs4803051	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,28:29:52:0.538:2	0/1:17,17:27:34:0.500:2	0/1:4,3:29:7:0.429:2	0/1:25,21:29:46:0.457:2	0/1:1,30:30:31:0.968:2	0/1:27,18:29:45:0.400:2	0/1:19,18:30:37:0.486:2	./.	0/1:0,46:29:46:1.00:2	0/1:26,24:28:50:0.480:2	0/1:21,30:28:51:0.588:2
chr19	53612720	rs1560099	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,31:31:66:0.470:2	./.	0/1:32,32:32:64:0.500:2	./.	./.	0/1:54,38:32:92:0.413:2	./.
chr19	53612745	rs1133327	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:40,36:30:76:0.474:2	0/1:22,28:28:50:0.560:2	./.	0/1:37,37:30:74:0.500:2	0/1:1,44:28:45:0.978:2	0/1:30,37:29:67:0.552:2	0/1:25,17:29:42:0.405:2	./.	0/1:0,79:29:79:1.00:2	0/1:36,28:29:64:0.438:2	0/1:62,49:30:111:0.441:2
chr19	53612757	rs1054485	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,36:32:77:0.468:2	0/1:21,26:32:47:0.553:2	0/1:1,3:33:4:0.750:2	0/1:39,34:33:73:0.466:2	0/1:1,52:31:53:0.981:2	0/1:28,38:32:66:0.576:2	0/1:25,22:32:47:0.468:2	./.	0/1:1,77:33:78:0.987:2	0/1:39,26:32:65:0.400:2	0/1:58,45:33:103:0.437:2
chr19	53612989	rs1054484	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,45:28:104:0.433:2	./.	0/1:84,54:29:138:0.391:2	./.	./.	0/1:68,82:30:150:0.547:2	./.
chr19	53644386	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,4:29:59:0.068:2	./.	./.	./.	./.	./.	./.	./.	0/1:74,5:33:79:0.063:2	./.	./.
chr19	53644443	rs1661935	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,36:31:78:0.462:2	./.	./.	./.	./.	./.
chr19	53645291	rs2195310	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,23:33:52:0.442:2	0/1:24,11:33:35:0.314:2	0/1:6,5:31:11:0.455:2	0/1:42,30:33:72:0.417:2	0/1:0,43:31:43:1.00:2	./.	./.	0/1:0,51:33:51:1.00:2	0/1:30,29:34:59:0.492:2	0/1:16,23:33:39:0.590:2	0/1:34,44:33:78:0.564:2
chr19	53667804	rs4801958	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:16,29:31:45:0.644:2	0/1:7,10:32:17:0.588:2	./.	./.	0/1:0,21:30:21:1.00:2	./.	./.	0/1:0,51:31:51:1.00:2	./.	0/1:12,15:32:27:0.556:2	0/1:20,21:31:41:0.512:2
chr19	53667913	rs12459469	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:29,25:32:54:0.463:2	0/1:11,12:32:23:0.522:2	./.	./.	0/1:0,30:32:30:1.00:2	./.	./.	0/1:1,54:32:55:0.982:2	./.	0/1:27,22:32:49:0.449:2	0/1:34,33:32:67:0.493:2
chr19	53667940	rs12459471	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:34,25:30:59:0.424:2	0/1:14,14:29:28:0.500:2	0/1:4,3:31:7:0.429:2	./.	0/1:0,23:29:23:1.00:2	./.	./.	0/1:2,52:29:54:0.963:2	./.	0/1:35,25:29:60:0.417:2	0/1:42,47:30:89:0.528:2
chr19	53668068	rs76512666	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,75:32:163:0.463:2
chr19	53668549	rs10409924	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,8:30:12:0.667:2	0/1:53,40:30:93:0.430:2	./.	./.	0/1:60,46:29:106:0.434:2	./.	./.	0/1:77,37:30:114:0.325:2	./.
chr19	53668697	rs45499997	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,43:33:85:0.506:2	0/1:19,24:31:43:0.558:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	53669273	rs4801959	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:31:63:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,96:31:96:1.00:2	0/1:0,68:30:68:1.00:2	0/1:39,35:29:74:0.473:2	0/1:1,69:31:70:0.986:2	0/1:0,90:31:90:1.00:2	0/1:41,41:31:82:0.500:2	0/1:1,77:30:78:0.987:2	0/1:0,94:30:94:1.00:2
chr19	53669492	rs12460170	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:54,45:32:99:0.455:2	0/1:48,40:32:88:0.455:2	0/1:13,16:32:29:0.552:2	./.	0/1:1,94:33:95:0.989:2	./.	./.	0/1:0,119:33:119:1.00:2	./.	0/1:67,53:32:120:0.442:2	0/1:70,75:34:145:0.517:2
chr19	53740821	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:32:147:0.027:2	./.	./.	./.	./.	./.
chr19	53740822	rs8113436	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:60,57:32:117:0.487:2	0/1:45,28:32:73:0.384:2	0/1:14,9:32:23:0.391:2	./.	0/1:79,38:32:117:0.325:2	./.	0/1:83,48:33:131:0.366:2	./.	0/1:81,47:34:128:0.367:2	0/1:68,59:31:127:0.465:2	0/1:69,54:31:123:0.439:2
chr19	53741068	rs12984188	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:45,44:33:89:0.494:2	0/1:33,25:32:58:0.431:2	0/1:3,3:32:6:0.500:2	./.	0/1:53,31:31:84:0.369:2	./.	0/1:50,39:31:89:0.438:2	./.	0/1:67,45:32:112:0.402:2	0/1:47,43:32:90:0.478:2	0/1:64,46:32:110:0.418:2
chr19	53741188	rs12984473	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:11,10:31:21:0.476:2	0/1:2,7:32:9:0.778:2	./.	./.	0/1:16,10:29:26:0.385:2	./.	0/1:13,4:32:17:0.235:2	./.	0/1:3,5:33:8:0.625:2	0/1:4,4:31:8:0.500:2	0/1:26,16:32:42:0.381:2
chr19	53761740	rs2965249	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	./.	./.	0/1:31,26:29:57:0.456:2	./.	0/1:26,34:29:60:0.567:2	0/1:14,20:31:34:0.588:2	./.
chr19	53761775	rs112910446	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,18:32:31:0.581:2	./.	./.	./.	./.	./.	./.	./.
chr19	53762428	rs146423397	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,69:33:155:0.445:2	./.	./.
chr19	53762537	rs12609049	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,69:31:178:0.388:2
chr19	53762675	rs61734062	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:97,90:31:187:0.481:2	0/1:105,62:31:167:0.371:2	./.	0/1:113,81:30:194:0.418:2	./.	./.	./.	./.	./.	./.	./.
chr19	53770133	rs202014957	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,9:32:77:0.117:2	./.	0/1:100,7:30:107:0.065:2	./.	./.
chr19	53770261	rs12977715	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,3:30:12:0.250:2	./.	./.	./.	0/1:57,22:28:79:0.278:2	./.	0/1:64,20:29:84:0.238:2	0/1:46,16:28:62:0.258:2	./.
chr19	53770551	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.	./.	./.	./.	./.	./.
chr19	53770569	rs115785997	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:152,32:33:184:0.174:2	./.	0/1:154,36:32:190:0.189:2	./.	./.	./.	./.	./.
chr19	53770694	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,5:30:77:0.065:2	0/1:63,6:30:69:0.087:2	./.	0/1:83,13:32:96:0.135:2	./.	0/1:75,12:32:87:0.138:2
chr19	53770746	rs140031028	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:32:13:0.308:2	./.	./.	./.	0/1:104,15:33:119:0.126:2	./.	0/1:117,14:32:131:0.107:2	./.	0/1:91,25:32:116:0.216:2
chr19	53770764	rs112711591	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,42:31:117:0.359:2	0/1:61,35:32:96:0.365:2	0/1:70,35:30:105:0.333:2	./.	0/1:49,27:31:76:0.355:2	./.	0/1:56,29:30:86:0.341:2	0/1:81,48:31:129:0.372:2
chr19	53770825	rs141780644	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,5:32:112:0.045:2	./.	0/1:113,5:32:118:0.042:2	0/1:105,4:32:110:0.037:2	./.	./.	./.	0/1:135,6:33:141:0.043:2
chr19	53792954	rs34683072	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,24:31:61:0.393:2	./.	./.	./.	./.	0/1:44,35:32:79:0.443:2	0/1:68,52:33:120:0.433:2
chr19	53792955	rs35700345	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,24:31:63:0.381:2	./.	./.	./.	./.	0/1:42,35:32:77:0.455:2	0/1:68,52:33:120:0.433:2
chr19	53793042	rs8109165	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,77:32:77:1.00:2	0/1:0,46:31:46:1.00:2	./.	0/1:34,17:31:51:0.333:2	0/1:32,32:30:64:0.500:2	./.	0/1:45,26:31:71:0.366:2	0/1:2,76:30:78:0.974:2	0/1:43,35:31:78:0.449:2	./.	./.
chr19	53793574	rs2865248	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:32:65:1.00:2	0/1:0,43:32:43:1.00:2	0/1:5,5:33:10:0.500:2	0/1:41,43:32:84:0.512:2	0/1:36,25:31:61:0.410:2	./.	0/1:33,41:32:74:0.554:2	0/1:1,68:33:69:0.986:2	0/1:51,41:32:92:0.446:2	./.	./.
chr19	53793798	rs12609478	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,13:32:34:0.382:2	./.	./.	./.
chr19	53793888	rs12609791	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,31:31:56:0.554:2	./.	./.	./.
chr19	53793911	rs7260390	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,43:29:44:0.977:2	0/1:1,41:31:42:0.976:2	0/1:9,3:31:12:0.250:2	0/1:44,33:29:77:0.429:2	0/1:33,24:30:57:0.421:2	./.	./.	0/1:27,32:30:59:0.542:2	0/1:50,29:31:79:0.367:2	./.	./.
chr19	53793995	rs73049092	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,37:32:77:0.481:2	0/1:55,40:32:95:0.421:2	./.	./.	./.
chr19	53794198	rs117480526	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,24:29:45:0.533:2	./.	./.	./.	./.	./.	./.	./.
chr19	53794579	rs10401943	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:28:6:0.500:2	0/1:17,7:29:24:0.292:2	./.	0/1:18,11:29:29:0.379:2	0/1:6,6:30:12:0.500:2	0/1:11,7:26:18:0.389:2	./.	./.	./.
chr19	53794858	rs10406636	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,17:29:30:0.567:2	0/1:95,79:31:174:0.454:2	./.	0/1:92,82:31:174:0.471:2	0/1:1,175:31:176:0.994:2	0/1:82,69:31:151:0.457:2	0/1:89,87:32:176:0.494:2	./.	./.
chr19	53848779	rs75887836	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:23,42:29:65:0.646:2	0/1:12,8:30:20:0.400:2	./.	0/1:21,25:29:46:0.543:2	./.	./.	./.	0/1:50,25:29:75:0.333:2	./.	./.	./.
chr19	53848812	rs111757330	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,19:31:67:0.284:2
chr19	53848837	rs56683540	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:21,33:31:54:0.611:2	0/1:12,10:32:22:0.455:2	./.	0/1:33,23:31:56:0.411:2	./.	./.	./.	0/1:57,24:31:81:0.296:2	./.	./.	./.
chr19	53848845	rs57319493	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:23,30:33:53:0.566:2	0/1:11,11:32:22:0.500:2	./.	0/1:33,23:32:56:0.411:2	./.	./.	./.	0/1:51,19:32:70:0.271:2	./.	./.	./.
chr19	53854397	rs10415799	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:66,55:33:121:0.455:2	0/1:30,31:32:61:0.508:2	./.	./.	0/1:0,69:32:69:1.00:2	./.	0/1:48,35:33:83:0.422:2	0/1:43,44:31:87:0.506:2	0/1:0,104:33:104:1.00:2	./.	0/1:62,69:33:131:0.527:2
chr19	53854948	rs73935563	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,18:32:48:0.375:2	./.	./.	./.	./.	./.	./.	./.
chr19	53855284	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,3:33:30:0.100:2	./.	./.
chr19	53855364	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,3:33:51:0.060:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,3:34:65:0.046:2
chr19	53855365	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,3:33:51:0.059:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	53855472	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,3:31:17:0.176:2	./.	./.	./.	./.
chr19	53856349	rs55874600	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:32:10:1.00:2	./.	./.	0/1:0,86:30:86:1.00:2	0/1:39,25:32:65:0.391:2	./.	./.	0/1:64,46:32:112:0.418:2	0/1:72,58:32:130:0.446:2
chr19	53856409	rs145598405	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,56:33:111:0.505:2	./.	./.	./.	./.	./.	./.	./.
chr19	53856468	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,4:29:72:0.056:2	./.	./.	./.	./.	./.	./.	./.
chr19	53856702	rs200114728	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,6:30:90:0.067:2	./.	./.	./.	./.	0/1:81,5:32:86:0.058:2	./.
chr19	53856730	rs201351032	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,6:29:78:0.077:2	./.	./.	./.	./.	0/1:78,5:30:83:0.060:2	./.
chr19	53856761	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,5:30:52:0.096:2	./.	./.	./.	./.	0/1:67,5:32:72:0.069:2	./.
chr19	53911510	rs8182488	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:59,57:33:116:0.491:2	0/1:42,38:32:80:0.475:2	0/1:7,10:31:17:0.588:2	./.	0/1:67,47:32:114:0.412:2	./.	0/1:72,62:31:134:0.463:2	./.	./.	./.	0/1:98,81:32:179:0.453:2
chr19	53911941	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:33:89:0.045:2
chr19	53911973	rs10425136	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,50:32:51:0.980:2	0/1:0,23:32:23:1.00:2	0/1:0,9:32:9:1.00:2	0/1:40,37:33:77:0.481:2	0/1:0,41:31:41:1.00:2	0/1:33,29:32:62:0.468:2	0/1:25,20:32:45:0.444:2	0/1:39,33:32:72:0.458:2	0/1:46,42:32:88:0.477:2	0/1:9,34:33:43:0.791:2	0/1:0,73:32:73:1.00:2
chr19	53912242	rs10426347	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:32:74:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,18:31:18:1.00:2	0/1:46,49:31:95:0.516:2	0/1:0,63:31:63:1.00:2	0/1:58,37:31:95:0.389:2	0/1:85,37:31:122:0.303:2	0/1:68,41:32:109:0.376:2	0/1:64,55:32:119:0.462:2	0/1:47,43:32:90:0.478:2	0/1:0,89:31:89:1.00:2
chr19	53957946	rs148252402	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,54:32:99:0.545:2	./.	./.
chr19	53958126	rs2708743	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:33:68:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,72:32:72:1.00:2	0/1:7,17:32:24:0.708:2	0/1:0,62:31:62:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,48:33:48:1.00:2	0/1:1,62:32:63:0.984:2	0/1:46,28:33:74:0.378:2
chr19	53958263	rs1984432	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,98:31:98:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,97:30:97:1.00:2	0/1:1,40:29:41:0.976:2	0/1:0,96:30:96:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,96:30:96:1.00:2	0/1:0,100:30:100:1.00:2	0/1:0,84:31:84:1.00:2	0/1:48,60:31:108:0.556:2
chr19	53958798	rs72483991	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,27:31:55:0.491:2	./.
chr19	53959343	rs2708742	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:23,29:33:52:0.558:2	0/1:17,9:32:26:0.346:2	0/1:0,7:33:7:1.00:2	./.	./.	0/1:26,21:33:47:0.447:2	0/1:0,59:33:59:1.00:2	./.	0/1:0,83:33:83:1.00:2	./.	0/1:30,26:33:56:0.464:2
chr19	53959568	rs2617726	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:23,22:33:45:0.489:2	0/1:19,19:32:38:0.500:2	0/1:0,5:32:5:1.00:2	./.	./.	0/1:36,34:32:70:0.486:2	0/1:2,37:33:39:0.949:2	./.	0/1:1,66:33:67:0.985:2	./.	0/1:65,32:32:97:0.330:2
chr19	53959615	rs57586977	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,31:31:63:0.492:2	./.	./.	./.	0/1:21,33:31:54:0.611:2	./.	./.	./.
chr19	53959804	rs4803129	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,49:32:49:1.00:2	0/1:9,9:32:18:0.500:2	./.	./.	0/1:1,46:33:48:0.979:2	./.	./.	./.
chr19	53993670	rs2617667	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,33:32:83:0.398:2	./.	./.	0/1:23,34:32:57:0.596:2	./.	./.	0/1:68,58:31:127:0.460:2	./.
chr19	53993923	rs35712939	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,115:33:122:0.943:2	0/1:3,78:32:81:0.963:2	./.	./.	./.	0/1:88,83:32:171:0.485:2	./.	0/1:90,49:32:139:0.353:2	0/1:22,142:33:164:0.866:2	0/1:67,63:33:131:0.485:2	0/1:76,94:32:170:0.553:2
chr19	53993978	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:32:175:0.023:2	./.	./.
chr19	53993988	rs12460628	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,38:31:85:0.447:2	./.	./.	0/1:80,61:31:141:0.433:2	./.
chr19	53994061	rs3859494	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,6:31:16:0.375:2	0/1:35,34:32:69:0.493:2	./.	./.	./.	0/1:29,16:32:45:0.356:2	./.	./.	./.
chr19	53994178	rs10421308	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,11:33:34:0.324:2	./.	./.	0/1:36,25:32:61:0.410:2	./.
chr19	53994479	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,3:33:40:0.075:2	./.	./.	./.
chr19	53994494	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,3:33:46:0.065:2	./.	./.	./.
chr19	53994802	rs10422163	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,29:31:67:0.433:2	./.	./.	./.	0/1:40,22:32:62:0.355:2	./.	./.	./.
chr19	53995004	rs2708845	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,85:32:85:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,12:31:12:1.00:2	0/1:1,93:31:94:0.989:2	./.	0/1:57,49:31:106:0.462:2	0/1:52,35:32:87:0.402:2	0/1:0,103:31:103:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,141:32:141:1.00:2
chr19	53995257	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,3:32:39:0.077:2	./.	./.	./.	./.	0/1:36,3:32:39:0.077:2	./.
chr19	54080067	rs61744130	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,15:30:39:0.385:2	./.
chr19	54080144	rs8109631	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,33:31:33:1.00:2	0/1:0,25:32:25:1.00:2	./.	0/1:0,38:32:38:1.00:2	0/1:1,31:32:32:0.969:2	0/1:0,62:32:62:1.00:2	0/1:21,27:32:48:0.563:2	0/1:1,62:32:63:0.984:2	0/1:25,23:31:48:0.479:2	0/1:0,36:32:36:1.00:2	0/1:0,57:31:57:1.00:2
chr19	54080279	rs1351	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,32:30:65:0.492:2	./.	0/1:27,20:29:47:0.426:2	0/1:36,28:31:64:0.438:2	./.	./.
chr19	54080780	rs16985052	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,15:31:32:0.469:2	./.	0/1:19,31:32:50:0.620:2	0/1:24,24:31:48:0.500:2	./.	./.
chr19	54080999	rs1056393	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,45:32:105:0.429:2	./.	0/1:67,46:32:113:0.407:2	0/1:69,53:32:122:0.434:2	./.	./.
chr19	54182249	rs7256893	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:97,97:31:195:0.500:2	0/1:66,43:30:109:0.394:2	./.	./.	0/1:76,37:31:113:0.327:2	./.	./.	0/1:2,147:30:149:0.987:2	./.	./.	./.
chr19	54183259	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:34:195:0.021:2	./.	./.	./.
chr19	54183263	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:160,7:32:169:0.042:2	./.	0/1:175,4:32:179:0.022:2	0/1:185,7:29:195:0.036:2	./.	./.	./.
chr19	54189781	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,3:33:60:0.050:2
chr19	54191743	rs57111412	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,34:33:66:0.515:2	0/1:30,11:33:41:0.268:2	./.	./.	./.	./.	./.	./.	0/1:43,46:32:89:0.517:2	./.	./.
chr19	54198461	rs11672638	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:35:3:1.00:2	./.	./.	./.	./.	0/1:5,12:33:17:0.706:2	0/1:15,9:33:24:0.375:2	0/1:9,16:33:25:0.640:2	./.
chr19	54209517	rs374967660	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,36:31:71:0.507:2
chr19	54219878	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,4:30:27:0.148:2	./.	./.	./.	./.	./.	./.
chr19	54219884	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,4:31:26:0.154:2	./.	./.	./.	./.	./.	./.
chr19	54225501	rs112328520	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,32:33:127:0.252:2	0/1:62,12:33:74:0.162:2	./.	./.	./.	0/1:123,5:33:128:0.039:2	./.	./.	./.	./.	./.
chr19	54238208	rs74704964	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,13:31:33:0.394:2	./.	./.	./.	./.	./.	./.	./.
chr19	54242601	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,3:31:39:0.077:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	54245845	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:31:154:0.026:2
chr19	54257363	rs370952209	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:32:45:0.089:2	./.	./.	./.
chr19	54264394	rs115975528	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,8:33:79:0.101:2	./.	./.
chr19	54307322	rs12460528	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,12:31:12:1.00:2	./.	0/1:54,46:31:100:0.460:2	./.	0/1:2,96:31:98:0.980:2	0/1:56,42:31:98:0.429:2	0/1:41,38:32:79:0.481:2	./.	0/1:0,60:31:60:1.00:2
chr19	54308554	rs4806773	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:32:44:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,10:31:10:1.00:2	0/1:33,36:31:69:0.522:2	0/1:29,43:30:72:0.597:2	0/1:28,37:31:65:0.569:2	0/1:0,62:31:62:1.00:2	0/1:0,69:31:70:1.00:2	0/1:0,48:32:48:1.00:2	0/1:18,40:31:58:0.690:2	0/1:0,58:31:58:1.00:2
chr19	54310893	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,7:29:82:0.085:2	./.	./.	./.	./.	./.
chr19	54313707	rs34971363	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,41:32:94:0.436:2	./.	./.	./.	./.	./.	./.	./.
chr19	54313975	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:33:40:0.100:2	./.	./.	./.	./.	./.
chr19	54314003	rs141245482	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,12:30:28:0.429:2	./.	./.	./.
chr19	54327313	rs34436714	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,7:29:16:0.438:2	./.	./.	./.	./.	./.	0/1:51,35:31:87:0.407:2	0/1:30,21:30:51:0.412:2	./.
chr19	54378020	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:81,12:14:93:0.129:2	./.	./.	0/1:66,11:15:77:0.143:2	./.	./.	./.	0/1:76,19:12:95:0.200:2	0/1:68,18:10:86:0.209:2	0/1:66,18:12:84:0.214:2	0/1:63,17:11:80:0.213:2
chr19	54378025	rs201228132	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,14:15:74:0.189:2	./.	0/1:59,8:16:68:0.119:2
chr19	54378029	rs307934	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,39:27:69:0.565:2	0/1:15,21:32:36:0.583:2	0/1:2,9:26:11:0.818:2	0/1:27,30:32:57:0.526:2	0/1:31,29:29:60:0.483:2	0/1:54,13:25:67:0.194:2	0/1:30,31:29:61:0.508:2	0/1:36,25:26:61:0.410:2	0/1:39,28:31:67:0.418:2	0/1:33,24:30:57:0.421:2	0/1:42,32:30:74:0.432:2
chr19	54378030	rs200046918	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:59,11:23:70:0.157:2	0/1:30,6:17:36:0.167:2	./.	0/1:49,8:19:57:0.140:2	0/1:45,15:19:60:0.250:2	0/1:22,43:29:65:0.662:2	0/1:49,12:21:61:0.197:2	0/1:49,13:23:62:0.210:2	0/1:58,11:26:69:0.159:2	0/1:50,8:24:58:0.138:2	0/1:60,15:22:75:0.200:2
chr19	54378031	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,6:29:38:0.158:2	./.	./.	0/1:50,11:25:61:0.180:2	./.	./.	./.	./.	0/1:54,6:22:60:0.100:2	0/1:74,6:24:80:0.075:2
chr19	54378035	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,32:29:62:0.516:2	./.	./.	./.	./.	./.
chr19	54378082	rs1143262	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,38:29:39:0.974:2	0/1:0,28:29:28:1.00:2	0/1:0,3:30:3:1.00:2	0/1:21,16:29:38:0.432:2	0/1:15,19:29:36:0.559:2	./.	0/1:0,33:29:33:1.00:2	0/1:1,21:29:22:0.955:2	0/1:16,22:28:38:0.579:2	0/1:0,25:29:25:1.00:2	0/1:1,59:28:60:0.983:2
chr19	54378099	rs437403	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,20:31:41:0.488:2	0/1:21,15:29:36:0.417:2	0/1:1,32:29:33:0.970:2	./.	./.	0/1:22,15:31:37:0.405:2	./.	./.
chr19	54378100	rs379364	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,20:31:42:0.476:2	0/1:22,15:29:37:0.405:2	0/1:1,32:30:33:0.970:2	./.	./.	0/1:22,15:31:37:0.405:2	./.	./.
chr19	54378242	rs13869	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,48:30:110:0.436:2	./.	./.	./.	./.	./.
chr19	54378248	rs12035	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,48:32:105:0.457:2	./.	./.	./.	./.	./.
chr19	54378627	rs307935	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,13:31:13:1.00:2	0/1:0,3:32:3:1.00:2	./.	0/1:0,14:32:14:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,7:31:7:1.00:2	0/1:2,7:32:9:0.778:2	0/1:0,19:31:19:1.00:2
chr19	54378789	rs307936	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:33:26:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,19:29:20:1.00:2	0/1:9,18:28:27:0.667:2	0/1:0,25:28:25:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,28:30:28:1.00:2	0/1:10,7:31:18:0.412:2	0/1:0,27:31:28:1.00:2
chr19	54378795	rs112445871	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,9:12:30:0.300:2	./.	./.	0/1:19,11:17:30:0.367:2	0/1:13,6:14:19:0.316:2	0/1:18,8:14:26:0.308:2	0/1:21,6:18:27:0.222:2	0/1:17,16:13:33:0.485:2	0/1:20,10:17:30:0.333:2	0/1:16,12:17:28:0.429:2	0/1:21,18:17:39:0.462:2
chr19	54379573	rs8604	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:33:16:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,3:33:3:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,9:32:9:1.00:2	0/1:9,3:33:12:0.250:2	0/1:0,4:33:4:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,11:33:11:1.00:2	0/1:3,4:33:7:0.571:2	0/1:0,9:33:9:1.00:2
chr19	54379663	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,4:30:31:0.129:2	./.	./.	./.	./.	./.	./.
chr19	54379664	rs61577158	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,4:32:31:0.129:2	./.	./.	./.	./.	./.	./.
chr19	54385820	rs2547362	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:31:34:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,57:31:57:1.00:2	0/1:23,18:31:41:0.439:2	0/1:0,62:31:62:1.00:2
chr19	54394965	rs3745406	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,21:30:53:0.396:2	./.	./.	0/1:1,89:30:90:0.989:2	0/1:55,53:30:108:0.491:2	0/1:46,53:29:99:0.535:2	./.
chr19	54403925	rs2242244	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,49:28:111:0.441:2	./.	./.	./.	./.	./.	./.	./.
chr19	54418706	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:164,5:28:169:0.030:2	./.	./.	./.	./.	./.	./.
chr19	54515415	rs12980121	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,4:33:20:0.200:2
chr19	54545186	rs73058793	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:32:9:0.556:2	./.	0/1:15,18:33:33:0.545:2	0/1:29,30:31:59:0.508:2	0/1:27,30:33:57:0.526:2	0/1:19,18:32:37:0.486:2	0/1:30,39:34:69:0.565:2	./.	0/1:40,24:33:65:0.375:2
chr19	54545531	rs2433724	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:29:6:1.00:2	0/1:51,36:31:87:0.414:2	0/1:1,68:30:69:0.986:2	0/1:34,45:29:79:0.570:2	0/1:40,41:30:81:0.506:2	0/1:53,61:30:114:0.535:2	0/1:52,41:31:93:0.441:2	./.	0/1:1,92:30:93:0.989:2
chr19	54561792	rs11669427	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:43,30:32:73:0.411:2	0/1:25,24:33:50:0.490:2	./.	./.	./.	./.	./.	./.	./.	0/1:38,35:32:73:0.479:2	./.
chr19	54573301	rs77768804	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,35:32:35:1.00:2	./.	./.	./.	./.	./.	0/1:18,20:32:38:0.526:2
chr19	54577242	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:33:129:0.031:2	./.
chr19	54577419	rs145288894	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,40:32:90:0.444:2	0/1:34,24:32:58:0.414:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	54578105	rs80087697	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,42:31:43:0.977:2	./.	./.	./.	./.	./.	0/1:29,38:32:67:0.567:2
chr19	54578328	rs17305269	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:34:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	54584637	rs376257831	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:157,4:34:161:0.025:2	./.	./.	./.	./.	./.	./.
chr19	54598604	rs8106130	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:34:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	54599222	rs61742144	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:3,4:31:7:0.571:2	./.	./.	./.	./.	./.	0/1:6,7:29:13:0.538:2	0/1:5,10:30:15:0.667:2	0/1:3,11:29:14:0.786:2	./.	./.
chr19	54599229	rs61742142	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	54600232	rs1657535	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:0,43:32:43:1.00:2	0/1:5,4:33:9:0.444:2	0/1:0,72:32:72:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,53:31:53:1.00:2	0/1:1,75:32:76:0.987:2	0/1:0,77:33:77:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,79:32:79:1.00:2
chr19	54606209	rs254260	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,74:32:76:0.974:2	0/1:0,40:32:40:1.00:2	0/1:0,22:33:22:1.00:2	0/1:0,90:32:90:1.00:2	0/1:2,69:31:71:0.972:2	0/1:1,99:31:100:0.990:2	0/1:0,55:31:55:1.00:2	0/1:1,96:31:97:0.990:2	0/1:0,83:33:83:1.00:2	0/1:0,80:32:80:1.00:2	0/1:1,43:31:44:0.977:2
chr19	54610170	rs1061333	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,10:30:23:0.435:2	./.	./.	0/1:14,10:29:24:0.417:2	./.	./.	0/1:7,8:31:15:0.533:2	0/1:16,7:31:23:0.304:2
chr19	54613420	rs12609379	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,32:31:33:0.970:2	./.	./.	0/1:0,44:32:44:1.00:2	./.	0/1:29,22:33:51:0.431:2	./.
chr19	54617999	rs149327492	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:32:59:0.068:2
chr19	54618613	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:31:118:0.034:2	./.	./.
chr19	54621769	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:32:65:0.062:2	./.	./.	./.	./.	./.
chr19	54625913	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:31:124:0.032:2	./.	./.	./.	./.
chr19	54627164	rs1058572	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,17:31:30:0.567:2	./.	./.	0/1:29,13:30:42:0.310:2	./.	./.	0/1:10,13:29:23:0.565:2	0/1:9,11:31:20:0.550:2
chr19	54627915	rs11556769	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:28:8:0.750:2	./.	./.	0/1:21,26:32:47:0.553:2	./.	./.	0/1:19,20:33:39:0.513:2	./.	0/1:15,16:31:31:0.516:2
chr19	54634830	rs62144168	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,3:30:13:0.231:2	./.	./.	0/1:94,88:30:182:0.484:2	./.	./.	0/1:96,86:30:182:0.473:2	./.	0/1:81,63:30:144:0.438:2
chr19	54647171	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:30:105:0.038:2	./.	./.	./.
chr19	54649671	rs36665	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:32:27:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,52:33:53:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,50:33:50:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,16:31:16:1.00:2
chr19	54652203	rs43211	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,7:31:7:1.00:2	0/1:0,3:31:3:1.00:2	./.	0/1:8,14:29:22:0.636:2	0/1:0,22:28:22:1.00:2	0/1:0,14:31:14:1.00:2	./.	./.	0/1:0,16:30:16:1.00:2	./.	0/1:2,5:29:7:0.714:2
chr19	54656614	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:30:109:0.037:2
chr19	54662043	rs35089861	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,82:31:87:0.943:2	./.	./.	./.	./.	./.	./.
chr19	54664209	rs36657	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:15,9:33:24:0.375:2	0/1:9,7:33:16:0.438:2	0/1:0,2:33:2:1.00:2	./.	0/1:28,23:33:51:0.451:2	0/1:2,38:33:40:0.950:2	./.	./.	0/1:23,11:34:34:0.324:2	./.	0/1:28,23:32:51:0.451:2
chr19	54664752	rs36656	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:17,30:33:47:0.638:2	0/1:10,16:33:26:0.615:2	0/1:0,2:33:2:1.00:2	./.	0/1:0,50:33:50:1.00:2	0/1:1,47:33:48:0.979:2	./.	./.	0/1:33,34:33:67:0.507:2	./.	0/1:21,31:31:52:0.596:2
chr19	54665970	rs36655	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,15:30:15:1.00:2	0/1:9,11:30:20:0.550:2	./.	./.	0/1:2,10:32:12:0.833:2	./.	0/1:6,20:31:26:0.769:2
chr19	54675643	rs77215230	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,26:30:59:0.441:2	0/1:16,9:31:25:0.360:2	./.	./.	./.	0/1:36,25:27:61:0.410:2	./.	./.	./.	./.	./.
chr19	54676763	rs641738	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:15,6:31:21:0.286:2	0/1:3,10:31:13:0.769:2	0/1:0,2:33:2:1.00:2	./.	0/1:0,19:30:19:1.00:2	0/1:7,10:32:17:0.588:2	./.	./.	0/1:17,18:34:35:0.514:2	./.	0/1:13,13:30:26:0.500:2
chr19	54677759	rs4806721	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:30:22:1.00:2	0/1:0,10:29:10:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,25:29:25:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,9:25:9:1.00:2
chr19	54677897	rs10416555	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,20:33:59:0.339:2	0/1:16,21:32:37:0.568:2	./.	./.	./.	0/1:63,70:31:133:0.526:2	./.	./.	./.	./.	./.
chr19	54697079	rs7595	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,48:32:49:0.980:2	0/1:0,14:31:14:1.00:2	0/1:0,2:32:2:1.00:2	0/1:1,37:33:38:0.974:2	0/1:1,84:32:85:0.988:2	0/1:32,26:33:58:0.448:2	0/1:39,38:32:77:0.494:2	0/1:42,41:32:83:0.494:2	0/1:1,44:33:45:0.978:2	0/1:0,38:33:38:1.00:2	0/1:1,36:33:37:0.973:2
chr19	54710377	rs377555980	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:32:179:0.022:2	./.	./.
chr19	54711329	rs4838	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,23:33:56:0.411:2	0/1:14,15:31:29:0.517:2	./.	./.	./.	./.	./.	./.	0/1:59,24:32:83:0.289:2	./.	./.
chr19	54721049	rs60566950	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:32:180:0.022:2	./.	./.	./.	./.
chr19	54721090	rs141841040	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,5:31:116:0.043:2	./.
chr19	54721203	rs1132612	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:151,7:29:158:0.044:2	0/1:79,9:31:88:0.102:2	./.	0/1:112,9:31:121:0.074:2	./.	./.	./.	./.	./.	./.	0/1:172,11:30:183:0.060:2
chr19	54721215	rs1053011	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:164,13:32:177:0.073:2	0/1:83,13:32:96:0.135:2	./.	0/1:127,16:32:143:0.112:2	./.	./.	./.	./.	./.	./.	0/1:173,15:32:189:0.080:2
chr19	54721216	rs1053008	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:161,13:32:176:0.075:2	0/1:83,14:30:97:0.144:2	./.	0/1:127,16:32:143:0.112:2	./.	./.	./.	./.	./.	./.	0/1:170,17:29:189:0.091:2
chr19	54721256	rs117030367	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,9:32:27:0.333:2	0/1:174,18:31:192:0.094:2	./.	./.	0/1:192,4:33:196:0.020:2	0/1:188,5:32:193:0.026:2	0/1:134,27:32:161:0.168:2	0/1:111,41:31:152:0.270:2	./.
chr19	54721260	rs117334650	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,5:31:29:0.172:2	0/1:182,8:31:190:0.042:2	./.	./.	0/1:190,5:32:195:0.026:2	0/1:183,10:31:193:0.052:2	0/1:137,31:31:168:0.185:2	0/1:110,45:30:155:0.290:2	./.
chr19	54721287	rs76445385	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:31,9:29:40:0.225:2	0/1:170,15:30:186:0.081:2	./.	./.	0/1:167,19:30:186:0.102:2	0/1:168,29:29:197:0.147:2	0/1:164,12:29:176:0.068:2	0/1:141,45:30:186:0.242:2	./.
chr19	54721320	rs1053002	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,12:31:35:0.343:2	0/1:117,37:29:154:0.240:2	./.	./.	./.	./.	0/1:110,45:31:155:0.290:2	0/1:134,51:30:185:0.276:2	./.
chr19	54721323	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,5:29:34:0.147:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	54722209	rs58414108	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:28:10:0.400:2	0/1:130,53:29:183:0.290:2	./.	./.	./.	./.	0/1:81,56:30:137:0.409:2	0/1:63,44:29:108:0.411:2	./.
chr19	54722250	rs1132610	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,7:31:15:0.467:2	0/1:127,57:30:184:0.310:2	./.	./.	./.	./.	0/1:89,70:30:160:0.440:2	0/1:77,55:29:132:0.417:2	./.
chr19	54722275	rs1132609	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,51:32:128:0.398:2	0/1:50,37:32:87:0.425:2	./.	./.	./.	./.	./.	./.	0/1:73,79:33:152:0.520:2	./.	./.
chr19	54723355	rs255774	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,28:31:46:0.609:2	0/1:15,10:31:25:0.400:2	0/1:2,5:32:7:0.714:2	0/1:33,23:33:56:0.411:2	0/1:33,22:32:55:0.400:2	0/1:36,27:31:63:0.429:2	0/1:2,15:32:17:0.882:2	0/1:3,37:32:40:0.925:2	./.	0/1:23,9:32:32:0.281:2	0/1:17,16:32:33:0.485:2
chr19	54723738	rs255772	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:32:26:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,29:32:29:1.00:2	0/1:16,6:31:22:0.273:2	0/1:19,15:32:34:0.441:2	0/1:1,27:32:28:0.964:2	0/1:0,19:33:19:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,21:32:21:1.00:2	0/1:30,17:33:47:0.362:2
chr19	54723766	rs114574888	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,26:33:36:0.722:2	./.	./.	./.	./.	0/1:31,30:30:61:0.492:2	0/1:9,16:31:25:0.640:2	./.
chr19	54724006	rs4806726	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,18:31:19:0.947:2	0/1:2,13:32:15:0.867:2	./.	./.	0/1:16,4:31:20:0.200:2	./.	./.	0/1:27,4:34:31:0.129:2	0/1:46,28:33:74:0.378:2	./.	./.
chr19	54724407	rs1132608	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:22:4:0.750:2	0/1:1,4:28:5:0.800:2	./.	./.	./.
chr19	54724411	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	0/1:1,3:22:4:0.750:2	0/1:1,4:25:5:0.800:2	./.	./.	./.
chr19	54724430	rs1132606	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:31:5:0.800:2	0/1:1,4:31:5:0.800:2	./.	./.	0/1:30,4:28:35:0.118:2	0/1:60,11:30:72:0.155:2	0/1:0,4:26:4:1.00:2	0/1:2,11:29:13:0.846:2	./.	0/1:21,7:29:30:0.250:2	0/1:3,5:30:8:0.625:2
chr19	54724431	rs1132605	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:31:5:0.800:2	0/1:1,4:31:5:0.800:2	./.	./.	0/1:32,4:30:36:0.111:2	0/1:62,11:29:73:0.151:2	0/1:1,3:26:4:0.750:2	0/1:2,11:30:13:0.846:2	./.	0/1:26,7:29:33:0.212:2	0/1:3,5:29:8:0.625:2
chr19	54724443	rs201735825	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:28:3:1.00:2	0/1:11,40:28:51:0.784:2	./.	./.	./.	./.	0/1:7,45:27:52:0.865:2	0/1:23,23:28:46:0.500:2	./.
chr19	54724457	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,5:32:7:0.714:2	0/1:26,27:30:53:0.509:2	0/1:26,37:31:63:0.587:2	0/1:69,51:29:120:0.425:2	./.	./.	0/1:7,47:32:54:0.870:2	0/1:45,27:29:72:0.375:2	0/1:37,20:31:57:0.351:2
chr19	54724458	.	A	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,5:28:7:0.714:2	0/1:30,27:27:57:0.474:2	0/1:26,37:27:63:0.587:2	0/1:74,51:27:125:0.408:2	./.	./.	0/1:7,46:27:53:0.868:2	0/1:45,27:28:72:0.375:2	0/1:40,20:26:60:0.333:2
chr19	54725156	rs181211220	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:27:8:1.00:2	./.	./.	./.	./.	0/1:0,12:28:12:1.00:2	0/1:0,7:28:7:1.00:2	./.
chr19	54725190	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,8:30:34:0.235:2	./.	./.	./.	./.	0/1:11,13:29:24:0.542:2	0/1:15,16:31:31:0.516:2	./.
chr19	54725745	rs202131060	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:39,3:33:42:0.071:2	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	0/1:1,3:33:4:0.750:2	./.	0/1:0,2:32:2:1.00:2	./.
chr19	54725755	rs373643684	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.
chr19	54725756	rs200325318	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.
chr19	54725798	rs75069054	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:28:3:1.00:2	0/1:0,57:28:57:1.00:2	0/1:1,61:27:62:0.984:2	0/1:0,6:26:6:1.00:2	0/1:0,3:28:3:1.00:2	./.	0/1:0,2:28:2:1.00:2	0/1:2,99:28:101:0.980:2
chr19	54725835	rs201948566	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,21:31:21:1.00:2	0/1:0,12:31:12:1.00:2	./.	0/1:0,8:31:8:1.00:2	0/1:112,7:32:119:0.059:2	0/1:123,9:31:132:0.068:2	0/1:2,7:32:9:0.778:2	0/1:0,11:32:11:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,10:32:10:1.00:2	0/1:151,9:32:160:0.056:2
chr19	54725913	rs199822090	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:32:10:0.400:2	0/1:71,56:32:127:0.441:2	./.	./.	./.	./.	0/1:68,57:32:125:0.456:2	0/1:106,45:32:151:0.298:2	./.
chr19	54725930	rs61480095	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:48,48:32:97:0.500:2	0/1:38,31:32:69:0.449:2	./.	./.	0/1:120,53:32:173:0.306:2	0/1:114,63:31:177:0.356:2	0/1:38,73:31:111:0.658:2	0/1:72,123:31:195:0.631:2	./.	0/1:103,59:31:162:0.364:2	0/1:122,51:32:173:0.295:2
chr19	54725980	rs150024950	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,5:31:91:0.055:2	./.	./.	./.	./.	./.	./.
chr19	54725992	rs148339740	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,7:28:79:0.089:2	./.	./.	0/1:43,7:26:50:0.140:2	0/1:50,4:29:54:0.074:2	./.	./.
chr19	54725995	rs61187720	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,34:32:38:0.895:2	0/1:2,22:31:24:0.917:2	0/1:1,3:31:4:0.750:2	0/1:3,39:31:42:0.929:2	0/1:38,31:30:69:0.449:2	0/1:52,53:30:105:0.505:2	0/1:5,34:31:39:0.872:2	0/1:13,37:30:50:0.740:2	0/1:6,43:31:49:0.878:2	0/1:4,56:31:60:0.933:2	0/1:62,40:31:102:0.392:2
chr19	54726162	rs56182917	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:33:36:1.00:2	0/1:0,19:33:19:1.00:2	0/1:0,3:34:3:1.00:2	0/1:0,27:32:27:1.00:2	0/1:75,10:31:85:0.118:2	0/1:129,52:32:181:0.287:2	0/1:2,5:32:7:0.714:2	0/1:0,69:32:69:1.00:2	./.	0/1:0,36:32:36:1.00:2	0/1:102,33:32:135:0.244:2
chr19	54726226	rs75672336	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,173:31:177:0.977:2	0/1:2,101:29:103:0.981:2	0/1:0,8:31:8:1.00:2	0/1:0,150:31:150:1.00:2	0/1:155,40:31:195:0.205:2	0/1:87,102:31:189:0.540:2	0/1:6,64:30:70:0.914:2	0/1:0,182:31:182:1.00:2	./.	0/1:0,177:30:177:1.00:2	0/1:108,68:30:176:0.386:2
chr19	54726241	rs77279742	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:102,75:30:177:0.424:2	0/1:79,36:31:115:0.313:2	./.	./.	0/1:157,37:29:195:0.191:2	0/1:148,46:29:194:0.237:2	0/1:7,74:29:81:0.914:2	0/1:123,57:29:180:0.317:2	./.	0/1:118,63:30:181:0.348:2	0/1:156,22:30:179:0.124:2
chr19	54726299	rs80077296	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:64,42:33:106:0.396:2	0/1:55,19:33:74:0.257:2	./.	./.	0/1:179,15:32:194:0.077:2	0/1:168,28:31:197:0.143:2	0/1:9,49:32:58:0.845:2	0/1:97,70:32:167:0.419:2	./.	0/1:71,33:31:104:0.317:2	0/1:168,21:32:189:0.111:2
chr19	54726324	rs79304773	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,52:31:53:0.981:2	0/1:0,39:32:39:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,61:32:61:1.00:2	0/1:176,16:31:192:0.083:2	0/1:132,34:30:166:0.205:2	0/1:3,27:32:30:0.900:2	0/1:1,124:31:125:0.992:2	./.	0/1:0,48:32:48:1.00:2	0/1:147,33:31:180:0.183:2
chr19	54726329	rs200199363	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.	./.	./.	./.	./.	./.	./.
chr19	54726347	rs76998994	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,40:32:41:0.976:2	0/1:0,22:32:22:1.00:2	0/1:0,3:29:3:1.00:2	0/1:0,26:32:26:1.00:2	0/1:161,7:31:168:0.042:2	0/1:140,23:32:163:0.141:2	0/1:3,10:32:13:0.769:2	0/1:0,63:32:63:1.00:2	./.	0/1:0,30:33:30:1.00:2	0/1:139,24:32:163:0.147:2
chr19	54726628	rs200758022	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,20:31:64:0.313:2	0/1:46,8:32:54:0.148:2	./.	./.	./.	./.	./.	./.	0/1:85,34:32:119:0.286:2	./.	./.
chr19	54726630	rs201587814	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:47,14:31:61:0.230:2	0/1:37,16:31:53:0.302:2	./.	./.	0/1:63,21:30:84:0.250:2	0/1:97,41:30:138:0.297:2	0/1:23,16:31:39:0.410:2	0/1:54,41:29:95:0.432:2	./.	0/1:60,8:29:69:0.118:2	0/1:136,30:31:166:0.181:2
chr19	54726665	rs373978777	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:70,31:32:101:0.307:2	0/1:43,30:32:73:0.411:2	./.	./.	0/1:76,35:30:111:0.315:2	0/1:110,77:30:189:0.412:2	0/1:26,33:31:59:0.559:2	0/1:55,94:31:149:0.631:2	./.	0/1:65,37:30:102:0.363:2	0/1:148,46:31:194:0.237:2
chr19	54726784	rs201613832	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:84,36:27:120:0.300:2	0/1:47,19:28:66:0.288:2	./.	0/1:1,26:26:27:0.963:2	0/1:173,8:26:182:0.044:2	0/1:149,19:27:168:0.113:2	./.	0/1:136,12:28:148:0.081:2	0/1:0,19:27:19:1.00:2	0/1:114,12:29:126:0.095:2	0/1:153,14:27:167:0.084:2
chr19	54726816	rs80332440	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:63,36:33:99:0.364:2	0/1:38,22:32:60:0.367:2	./.	./.	0/1:123,27:31:150:0.180:2	0/1:116,22:30:138:0.159:2	0/1:2,47:31:49:0.959:2	0/1:53,48:30:101:0.475:2	./.	0/1:32,46:31:78:0.590:2	0/1:117,26:30:143:0.182:2
chr19	54726833	rs149695852	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:66,7:32:73:0.096:2	0/1:49,8:29:57:0.140:2	./.	./.	0/1:131,7:26:138:0.051:2	0/1:123,9:28:132:0.068:2	0/1:2,19:28:21:0.905:2	0/1:76,21:29:97:0.216:2	./.	0/1:37,15:31:52:0.288:2	0/1:132,9:28:141:0.064:2
chr19	54726839	rs141453251	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:128:0.031:2	0/1:2,7:30:9:0.778:2	0/1:80,9:32:89:0.101:2	./.	0/1:38,6:27:45:0.136:2	./.
chr19	54726843	rs138124247	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	0/1:39,5:31:44:0.114:2	./.
chr19	54726861	rs114813697	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,6:34:85:0.071:2	0/1:58,8:33:66:0.121:2	./.	./.	./.	0/1:131,13:33:144:0.090:2	0/1:4,9:34:13:0.692:2	0/1:98,15:33:113:0.133:2	./.	0/1:43,6:32:49:0.122:2	0/1:142,8:35:150:0.053:2
chr19	54726870	rs117942579	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,30:29:154:0.195:2
chr19	54726872	rs140228691	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:73,7:34:80:0.088:2	0/1:56,10:32:66:0.152:2	./.	./.	0/1:149,5:34:154:0.032:2	0/1:131,14:33:145:0.097:2	0/1:5,10:34:15:0.667:2	0/1:101,23:33:124:0.185:2	./.	0/1:42,8:32:50:0.160:2	0/1:143,11:31:155:0.071:2
chr19	54735619	rs7250243	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,17:32:35:0.486:2	0/1:10,14:32:24:0.583:2	./.	0/1:21,23:30:44:0.523:2	0/1:17,26:32:43:0.605:2	0/1:42,30:32:72:0.417:2	0/1:1,4:34:5:0.800:2	./.	./.	./.	0/1:45,14:33:59:0.237:2
chr19	54742900	rs117376661	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,64:32:126:0.508:2	./.	./.	./.	./.	./.	./.
chr19	54743758	rs7246746	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,26:31:63:0.419:2	0/1:22,15:32:37:0.405:2	0/1:6,3:31:9:0.333:2	0/1:78,26:32:104:0.250:2	0/1:35,14:31:49:0.286:2	0/1:87,21:32:108:0.194:2	0/1:0,21:31:21:1.00:2	0/1:18,59:31:77:0.766:2	./.	0/1:24,28:31:52:0.538:2	0/1:38,15:32:53:0.283:2
chr19	54744209	rs8105096	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:119,44:27:164:0.270:2	0/1:85,22:30:107:0.206:2	./.	./.	./.	./.	./.	./.	0/1:64,117:30:181:0.646:2	./.	0/1:178,16:29:194:0.082:2
chr19	54744210	rs8104206	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:121,43:27:164:0.262:2	0/1:86,22:28:108:0.204:2	./.	./.	./.	./.	./.	./.	0/1:64,118:29:182:0.648:2	./.	0/1:179,16:29:195:0.082:2
chr19	54744361	rs2361801	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,58:31:140:0.414:2	0/1:49,35:31:84:0.417:2	./.	./.	./.	./.	./.	./.	0/1:134,58:33:192:0.302:2	./.	0/1:128,53:32:181:0.293:2
chr19	54744387	rs71263238	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,42:32:126:0.333:2	0/1:38,24:32:62:0.387:2	./.	./.	./.	./.	./.	./.	0/1:128,48:32:176:0.273:2	./.	0/1:99,46:32:145:0.317:2
chr19	54744710	rs75031467	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,6:30:64:0.094:2
chr19	54744711	rs77137660	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,3:34:61:0.049:2	./.	0/1:59,6:31:65:0.092:2
chr19	54744722	rs56257556	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,5:30:81:0.062:2
chr19	54744771	rs142457810	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,27:30:182:0.148:2	./.	./.	./.	./.	./.
chr19	54744794	rs76869766	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:121,19:30:140:0.136:2	0/1:60,7:30:67:0.104:2	./.	./.	./.	./.	./.	./.	0/1:82,44:31:126:0.349:2	./.	0/1:135,20:30:155:0.129:2
chr19	54744799	rs1052975	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:116,21:30:137:0.153:2	0/1:58,8:30:66:0.121:2	./.	./.	./.	./.	./.	./.	0/1:82,45:31:127:0.354:2	./.	0/1:126,21:30:147:0.143:2
chr19	54744942	rs188780802	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:163,22:31:185:0.119:2	./.	./.	./.	./.	0/1:145,37:30:182:0.203:2	0/1:121,45:32:166:0.271:2	./.
chr19	54745496	rs77659630	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,8:33:106:0.075:2	./.	0/1:64,6:30:70:0.086:2	0/1:12,9:31:21:0.429:2	0/1:72,14:28:86:0.163:2	./.	0/1:87,8:33:95:0.084:2	./.
chr19	54745497	rs146470981	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,7:29:98:0.071:2	0/1:65,10:32:75:0.133:2	./.	./.	./.	./.	./.	./.	0/1:104,8:32:112:0.071:2	./.	./.
chr19	54745507	rs61734496	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,22:32:72:0.306:2	0/1:31,20:31:51:0.392:2	0/1:6,3:32:9:0.333:2	0/1:79,10:31:89:0.112:2	0/1:65,4:30:69:0.058:2	0/1:47,11:30:59:0.190:2	0/1:1,8:25:9:0.889:2	0/1:1,22:29:23:0.957:2	0/1:84,4:30:88:0.045:2	0/1:34,15:32:49:0.306:2	0/1:114,19:33:133:0.143:2
chr19	54745508	rs61734497	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,22:31:69:0.319:2	0/1:32,20:30:52:0.385:2	0/1:6,3:31:9:0.333:2	0/1:77,10:31:87:0.115:2	0/1:66,4:29:70:0.057:2	0/1:46,14:27:60:0.233:2	0/1:1,8:30:9:0.889:2	0/1:0,22:30:22:1.00:2	0/1:86,4:29:90:0.044:2	0/1:33,16:31:49:0.327:2	0/1:116,20:32:136:0.147:2
chr19	54745550	rs71257443	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:110,54:28:165:0.329:2	0/1:58,26:30:84:0.310:2	0/1:12,6:28:18:0.333:2	0/1:151,37:28:188:0.197:2	0/1:101,22:27:123:0.179:2	0/1:110,66:27:177:0.375:2	0/1:30,38:26:68:0.559:2	0/1:38,112:27:150:0.747:2	0/1:181,8:30:189:0.042:2	0/1:67,71:28:138:0.514:2	0/1:148,35:28:183:0.191:2
chr19	54745665	rs1052966	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:41,13:31:54:0.241:2	0/1:178,17:31:195:0.087:2	./.	./.	./.	./.	0/1:171,26:33:197:0.132:2	0/1:160,30:31:190:0.158:2	./.
chr19	54745682	rs111666280	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:166,25:31:191:0.131:2	0/1:136,23:30:159:0.145:2	./.	./.	0/1:145,21:30:166:0.127:2	0/1:139,55:29:194:0.284:2	0/1:118,34:31:152:0.224:2	0/1:138,54:30:192:0.281:2	./.	0/1:149,39:30:188:0.207:2	0/1:167,15:31:183:0.082:2
chr19	54745907	rs62133127	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:132,51:27:183:0.279:2	0/1:81,25:28:106:0.236:2	./.	0/1:162,33:28:195:0.169:2	./.	./.	./.	./.	0/1:156,39:28:195:0.200:2	./.	0/1:145,41:26:186:0.220:2
chr19	54745978	rs1052964	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:140,43:32:183:0.235:2	0/1:143,42:30:185:0.227:2	./.	0/1:182,15:30:197:0.076:2	0/1:175,14:29:189:0.074:2	0/1:159,27:31:186:0.145:2	0/1:179,12:27:191:0.063:2	0/1:1,119:30:120:0.992:2	./.	0/1:153,32:32:185:0.173:2	0/1:169,19:32:188:0.101:2
chr19	54745989	rs1052963	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:126,49:32:175:0.280:2	0/1:138,43:33:181:0.238:2	0/1:80,6:32:86:0.070:2	0/1:176,18:32:194:0.093:2	0/1:175,10:31:185:0.054:2	0/1:150,37:32:187:0.198:2	0/1:185,8:30:194:0.041:2	0/1:1,132:32:133:0.992:2	./.	0/1:151,28:31:179:0.156:2	0/1:157,27:33:184:0.147:2
chr19	54745993	rs11673178	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:160,19:31:179:0.106:2	0/1:174,15:31:189:0.079:2	./.	./.	0/1:182,9:28:192:0.047:2	0/1:170,18:29:188:0.096:2	0/1:186,6:29:192:0.031:2	0/1:117,45:29:162:0.278:2	./.	0/1:175,12:32:187:0.064:2	0/1:169,14:30:183:0.077:2
chr19	54746051	rs620207	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:112,78:33:190:0.411:2	0/1:100,68:32:168:0.405:2	./.	./.	0/1:160,28:33:188:0.149:2	0/1:162,28:33:190:0.147:2	0/1:152,33:32:185:0.178:2	0/1:127,53:31:180:0.294:2	0/1:167,31:33:198:0.157:2	0/1:176,19:32:195:0.097:2	0/1:136,52:33:188:0.277:2
chr19	54746081	rs28445220	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:106,62:29:168:0.369:2	0/1:113,61:28:174:0.351:2	0/1:67,21:29:88:0.239:2	0/1:157,35:30:192:0.182:2	0/1:141,36:29:177:0.203:2	0/1:108,79:30:187:0.422:2	0/1:98,33:30:131:0.252:2	0/1:0,156:29:156:1.00:2	./.	0/1:113,71:29:185:0.386:2	0/1:132,52:26:184:0.283:2
chr19	54746107	rs117442603	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:139,40:32:179:0.223:2	0/1:141,36:32:177:0.203:2	./.	./.	./.	./.	./.	./.	0/1:147,30:33:177:0.169:2	./.	./.
chr19	54746380	rs150628522	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,20:31:103:0.194:2	0/1:29,16:31:45:0.356:2	./.	./.	./.	./.	./.	./.	0/1:91,33:32:124:0.266:2	./.	./.
chr19	54746382	rs201396172	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:92,12:32:104:0.115:2	./.	./.	./.	0/1:76,12:31:88:0.136:2	0/1:117,38:31:155:0.245:2	0/1:27,9:31:36:0.250:2	0/1:55,24:31:79:0.304:2	./.	0/1:97,7:31:104:0.067:2	0/1:142,9:31:151:0.060:2
chr19	54746417	rs199798853	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:122,24:31:146:0.164:2	0/1:71,9:32:80:0.113:2	./.	./.	0/1:97,33:30:130:0.254:2	0/1:134,51:31:185:0.276:2	0/1:39,20:30:59:0.339:2	0/1:84,42:30:126:0.333:2	./.	0/1:127,21:30:148:0.142:2	0/1:175,17:30:192:0.089:2
chr19	54746591	rs200358619	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,16:31:37:0.432:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	54746611	rs146887808	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,31:31:90:0.344:2	0/1:37,15:31:52:0.288:2	0/1:29,3:32:32:0.094:2	0/1:166,22:33:188:0.117:2	0/1:77,17:32:94:0.181:2	0/1:5,51:31:56:0.911:2	./.	0/1:2,49:31:51:0.961:2	0/1:176,15:33:191:0.079:2	0/1:115,19:31:134:0.142:2	0/1:74,44:31:118:0.373:2
chr19	54746622	rs139758441	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,18:29:114:0.158:2
chr19	54746625	rs201900075	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:135,54:30:190:0.286:2	./.	./.	./.	./.	0/1:118,71:31:189:0.376:2	0/1:71,41:29:112:0.366:2	./.
chr19	54754683	rs148899015	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:140,4:32:145:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr19	54754730	rs199562785	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:151,4:32:155:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr19	54754752	rs433291	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,97:32:98:0.990:2	0/1:0,59:32:59:1.00:2	0/1:10,3:32:13:0.231:2	0/1:0,126:32:126:1.00:2	0/1:102,60:33:162:0.370:2	0/1:0,136:32:136:1.00:2	0/1:89,58:33:147:0.395:2	0/1:99,49:33:148:0.331:2	0/1:0,101:34:101:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,118:32:118:1.00:2
chr19	54755895	rs372563388	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:27:50:0.080:2
chr19	54755911	rs12977057	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,12:27:45:0.273:2	0/1:17,11:29:29:0.393:2	./.	./.	./.	./.	./.	./.	0/1:29,15:22:45:0.341:2	./.	./.
chr19	54755922	rs12977062	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,8:31:47:0.174:2	0/1:16,10:29:26:0.385:2	./.	./.	./.	./.	./.	./.	0/1:36,17:30:54:0.321:2	./.	./.
chr19	54755923	rs12976868	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,11:26:50:0.220:2	0/1:17,10:31:27:0.370:2	./.	./.	./.	./.	./.	./.	0/1:35,19:29:54:0.352:2	./.	./.
chr19	54755978	rs45600235	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,5:32:6:0.833:2	0/1:55,50:32:105:0.476:2	./.	./.	./.	./.	./.	./.	./.
chr19	54756221	rs3843753	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,26:32:62:0.419:2	./.	./.	./.	./.	./.	./.	./.
chr19	54758254	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:30:66:0.061:2	./.	./.	./.	./.
chr19	54759361	rs12975366	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,68:32:68:1.00:2	0/1:2,56:31:58:0.966:2	./.	0/1:67,42:31:109:0.385:2	0/1:58,57:31:115:0.496:2	0/1:0,88:32:88:1.00:2	./.	./.	0/1:53,37:31:90:0.411:2	./.	0/1:0,89:31:89:1.00:2
chr19	54761007	rs3848615	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,9:29:45:0.200:2	0/1:14,9:30:23:0.391:2	./.	0/1:26,34:27:60:0.567:2	0/1:29,28:28:57:0.491:2	0/1:0,54:29:54:1.00:2	./.	./.	./.	./.	0/1:0,51:28:51:1.00:2
chr19	54778554	rs201073905	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,6:26:185:0.032:2	./.
chr19	54778570	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,5:28:188:0.027:2	./.
chr19	54778617	rs143326661	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:168,5:31:173:0.029:2	./.	./.	0/1:168,4:31:172:0.023:2	./.	0/1:165,5:32:170:0.029:2	0/1:190,5:28:195:0.026:2	0/1:187,7:31:194:0.036:2	0/1:175,7:32:182:0.038:2	0/1:156,7:30:163:0.043:2	0/1:166,7:33:173:0.040:2
chr19	54779783	rs201556432	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,5:30:77:0.066:2	./.	./.	./.	./.	./.	./.	./.	0/1:107,9:29:117:0.078:2	./.	./.
chr19	54780300	rs199773766	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,18:32:147:0.122:2	./.	./.	0/1:130,29:31:159:0.182:2	./.	./.	./.
chr19	54781466	rs3859538	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,28:33:76:0.368:2	0/1:27,19:31:46:0.413:2	0/1:2,5:33:7:0.714:2	0/1:1,90:32:91:0.989:2	0/1:6,50:32:56:0.893:2	0/1:8,68:32:76:0.895:2	0/1:25,26:32:51:0.510:2	0/1:41,32:32:73:0.438:2	./.	0/1:28,36:32:64:0.563:2	0/1:2,44:32:46:0.957:2
chr19	54782163	rs4993134	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,36:30:72:0.500:2	0/1:24,14:31:38:0.368:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	54782407	rs1128646	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,44:32:89:0.494:2	0/1:43,31:32:74:0.419:2	0/1:4,8:30:12:0.667:2	0/1:6,113:32:119:0.950:2	0/1:3,100:31:103:0.971:2	0/1:0,102:31:102:1.00:2	0/1:79,49:32:128:0.383:2	0/1:77,49:32:126:0.389:2	./.	0/1:73,31:33:104:0.298:2	0/1:0,85:31:85:1.00:2
chr19	54782704	rs7247451	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,9:28:36:0.250:2	0/1:12,10:29:22:0.455:2	./.	0/1:2,18:31:20:0.900:2	0/1:2,7:31:9:0.778:2	0/1:0,24:31:24:1.00:2	0/1:19,3:31:22:0.136:2	0/1:47,9:32:56:0.161:2	./.	0/1:18,15:31:33:0.455:2	0/1:0,11:30:11:1.00:2
chr19	54782710	rs7247208	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,12:27:43:0.279:2	0/1:15,9:26:24:0.375:2	./.	0/1:2,18:29:20:0.900:2	0/1:3,11:26:14:0.786:2	0/1:0,22:28:22:1.00:2	./.	0/1:47,10:30:57:0.175:2	./.	0/1:18,15:27:34:0.455:2	0/1:0,13:29:14:1.00:2
chr19	54782724	rs7247538	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,14:29:45:0.311:2	0/1:15,11:30:26:0.423:2	./.	0/1:3,23:28:26:0.885:2	0/1:4,12:28:16:0.750:2	0/1:0,28:29:28:1.00:2	./.	0/1:51,13:29:64:0.203:2	./.	0/1:23,14:28:37:0.378:2	0/1:0,19:29:19:1.00:2
chr19	54782731	rs10404685	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,12:32:49:0.245:2	./.	./.
chr19	54782737	rs41308750	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,13:31:55:0.236:2	./.	./.
chr19	54782919	rs386056	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,75:32:157:0.478:2	0/1:96,74:32:170:0.435:2	0/1:100,76:32:176:0.432:2	0/1:72,79:31:151:0.523:2	./.
chr19	54783375	rs373032	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,46:31:82:0.561:2	0/1:31,25:31:56:0.446:2	0/1:8,8:31:16:0.500:2	0/1:0,149:31:149:1.00:2	0/1:2,121:31:123:0.984:2	0/1:0,124:30:124:1.00:2	0/1:0,111:30:112:1.00:2	0/1:0,114:31:115:1.00:2	0/1:41,51:32:92:0.554:2	0/1:0,95:32:95:1.00:2	0/1:0,101:30:101:1.00:2
chr19	54783694	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,94:32:179:0.525:2	./.	./.	./.	./.	./.	./.	./.
chr19	54783923	rs366337	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,10:31:24:0.417:2	0/1:13,8:32:21:0.381:2	0/1:0,4:31:4:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,19:32:19:1.00:2	0/1:1,16:32:17:0.941:2	0/1:0,22:31:22:1.00:2	0/1:0,21:34:21:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,26:32:26:1.00:2
chr19	54784130	rs383369	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,22:31:52:0.423:2	0/1:55,36:31:91:0.396:2	0/1:33,35:31:68:0.515:2	0/1:27,27:30:54:0.500:2	./.
chr19	54784165	rs111886127	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,8:30:120:0.067:2	./.	./.	./.
chr19	54784177	rs377759421	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:33:76:0.053:2	./.	./.
chr19	54784178	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,8:31:125:0.065:2	./.	./.	./.
chr19	54802548	.	G	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,4:31:56:0.071:2	0/1:27,5:31:32:0.156:2	./.	./.	./.	0/1:51,4:30:55:0.073:2	0/1:24,4:27:28:0.143:2	./.	./.	./.	0/1:43,5:30:48:0.104:2
chr19	54802554	rs114004709	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,4:32:59:0.068:2	0/1:29,4:33:33:0.121:2	./.	./.	./.	0/1:52,4:32:56:0.071:2	./.	./.	./.	0/1:38,5:31:43:0.116:2	0/1:45,5:33:50:0.100:2
chr19	54802693	rs73055462	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,60:29:107:0.566:2	./.	./.	./.
chr19	54803504	rs6509862	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,70:30:117:0.598:2	./.	./.	0/1:51,55:32:106:0.519:2
chr19	54804167	rs11574606	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:45,36:32:81:0.444:2	0/1:20,24:30:44:0.545:2	./.	0/1:46,46:31:92:0.500:2	./.	0/1:50,64:31:114:0.561:2	./.	./.	./.	./.	0/1:50,42:31:92:0.457:2
chr19	54823140	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,5:29:112:0.045:2	./.	./.	./.	./.	./.
chr19	54823258	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,10:31:175:0.057:2	./.	./.	./.	./.	./.
chr19	54823651	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,6:29:152:0.039:2	./.	./.	./.	./.	./.
chr19	54823663	rs4141536	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,5:30:153:0.033:2	./.	./.	./.	./.	./.
chr19	54823664	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,5:30:150:0.033:2	./.	./.	./.	./.	./.
chr19	54848157	rs76665615	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,14:30:114:0.123:2	0/1:104,13:31:117:0.111:2	./.	./.	./.	./.	./.
chr19	54848199	rs143168076	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,57:32:117:0.487:2	./.	./.	./.	./.
chr19	54848274	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:176,5:31:181:0.028:2	./.	./.	./.	./.	0/1:172,4:33:176:0.023:2	0/1:163,11:31:174:0.063:2	./.
chr19	54848275	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:179,5:29:184:0.027:2	./.	./.	./.	./.	0/1:170,4:33:174:0.023:2	0/1:161,11:31:172:0.064:2	./.
chr19	54848684	rs8105624	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:23,24:30:47:0.511:2	0/1:17,12:30:29:0.414:2	0/1:0,6:27:6:1.00:2	./.	0/1:40,25:29:67:0.385:2	./.	./.	./.	./.	./.	./.
chr19	54848732	rs117434371	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,33:30:77:0.429:2	./.	./.	./.	./.	./.
chr19	54848741	rs12985462	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,26:32:74:0.351:2	./.	./.	./.	./.
chr19	54849399	rs10419832	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,63:32:120:0.525:2
chr19	54849463	rs12976217	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,45:29:123:0.366:2	./.	0/1:1,104:28:105:0.990:2	0/1:4,99:29:103:0.961:2	./.	0/1:64,54:30:118:0.458:2	./.	./.
chr19	54849481	rs7256494	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,34:32:107:0.318:2	./.	0/1:1,81:32:82:0.988:2	0/1:3,88:32:91:0.967:2	0/1:73,53:32:126:0.421:2	0/1:56,51:33:107:0.477:2	./.	./.
chr19	54849942	rs2241384	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:9,7:34:16:0.438:2	0/1:9,5:33:14:0.357:2	0/1:0,4:25:4:1.00:2	./.	0/1:8,3:32:12:0.273:2	./.	./.	./.	./.	./.	./.
chr19	54866964	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:31:124:0.032:2	./.	./.	./.
chr19	54867572	rs7257187	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,17:33:38:0.447:2	0/1:5,13:32:19:0.722:2	0/1:1,2:33:3:0.667:2	0/1:39,13:33:52:0.250:2	0/1:0,25:32:25:1.00:2	./.	./.	./.	./.	0/1:26,21:34:47:0.447:2	./.
chr19	54870140	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,10:30:195:0.051:2	./.
chr19	54870191	rs111949142	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,55:31:144:0.382:2	./.	./.	./.	./.	./.	./.	./.
chr19	54871664	rs74463408	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,14:31:27:0.519:2	./.	./.	./.	./.	./.	./.
chr19	54872583	rs144818899	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:33:182:0.022:2	./.	./.	./.
chr19	54875881	rs62132211	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,26:32:74:0.351:2	0/1:53,28:31:81:0.346:2	./.	./.	./.	./.	./.	./.
chr19	54881850	rs77507448	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,23:28:38:0.605:2	0/1:122,61:30:183:0.333:2	0/1:108,77:30:186:0.416:2	0/1:122,66:29:188:0.351:2	0/1:78,110:30:188:0.585:2	./.	0/1:140,43:29:183:0.235:2	./.	./.
chr19	54881891	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:188,5:30:193:0.026:2	./.	0/1:152,6:31:158:0.038:2	./.	./.	./.	./.
chr19	54881893	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:188,5:31:193:0.026:2	./.	0/1:150,6:32:156:0.038:2	./.	./.	./.	./.
chr19	54926422	rs113342910	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,10:31:40:0.250:2	./.	./.	./.	./.	./.
chr19	54937862	rs45477994	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:28,37:31:65:0.569:2	0/1:37,33:32:70:0.471:2	./.	./.	0/1:73,68:31:141:0.482:2	0/1:75,64:30:139:0.460:2	0/1:96,57:31:153:0.373:2	./.	0/1:65,53:32:118:0.449:2	./.	./.
chr19	54940471	rs889149	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,15:33:26:0.577:2	0/1:6,6:33:12:0.500:2	./.	./.	0/1:14,14:30:28:0.500:2	0/1:16,8:30:24:0.333:2	0/1:0,24:29:24:1.00:2	./.	0/1:9,10:33:19:0.526:2	./.	0/1:14,17:31:31:0.548:2
chr19	54946784	rs3745420	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,91:31:93:0.978:2	0/1:0,51:32:51:1.00:2	./.	./.	0/1:110,35:31:145:0.241:2	0/1:0,162:32:163:1.00:2	0/1:2,101:32:103:0.981:2	./.	0/1:73,71:32:146:0.493:2	./.	0/1:49,30:29:79:0.380:2
chr19	54962579	rs1035452	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,33:31:35:0.943:2	0/1:0,25:32:26:1.00:2	0/1:2,5:27:7:0.714:2	0/1:0,55:31:55:1.00:2	0/1:5,60:30:65:0.923:2	0/1:0,60:30:60:1.00:2	0/1:60,40:30:100:0.400:2	0/1:1,85:31:86:0.988:2	0/1:1,34:31:35:0.971:2	./.	0/1:50,26:32:76:0.342:2
chr19	54965860	rs3813148	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,3:31:3:1.00:2	0/1:0,5:31:5:1.00:2	./.	0/1:0,14:31:14:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,11:32:11:1.00:2	0/1:2,4:32:6:0.667:2	0/1:0,12:29:12:1.00:2	0/1:0,7:31:7:1.00:2	./.	./.
chr19	54966579	rs889147	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,20:28:20:1.00:2	0/1:0,19:28:19:1.00:2	./.	0/1:1,45:27:46:0.978:2	0/1:0,22:28:22:1.00:2	0/1:0,17:28:17:1.00:2	0/1:0,34:27:34:1.00:2	0/1:0,24:27:24:1.00:2	0/1:0,29:29:29:1.00:2	./.	0/1:0,22:28:22:1.00:2
chr19	54968038	rs35336528	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,14:29:30:0.467:2	0/1:43,26:28:69:0.377:2	./.	./.	0/1:25,9:27:34:0.265:2
chr19	54973280	rs10423424	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,11:32:11:1.00:2	0/1:0,6:33:6:1.00:2	./.	0/1:0,21:32:21:1.00:2	0/1:14,4:33:18:0.222:2	0/1:0,12:32:12:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,10:32:10:1.00:2	0/1:8,11:33:19:0.579:2	./.	0/1:0,10:32:10:1.00:2
chr19	54973307	rs115799049	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,17:31:36:0.472:2	./.	./.	./.	0/1:20,11:33:31:0.355:2	./.	./.
chr19	54974318	rs10406453	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:23:3:1.00:2	0/1:0,2:30:2:1.00:2	./.	./.	./.	0/1:0,2:30:2:1.00:2
chr19	54974774	rs1981829	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	55009425	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:33:106:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	55009497	rs3865495	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,63:31:136:0.463:2	0/1:70,49:32:119:0.412:2	0/1:28,16:33:44:0.364:2	0/1:127,51:32:178:0.287:2	0/1:33,128:32:161:0.795:2	0/1:46,114:32:160:0.713:2	0/1:37,132:32:169:0.781:2	0/1:102,69:33:171:0.404:2	0/1:29,122:33:152:0.808:2	0/1:93,77:32:170:0.453:2	0/1:93,50:32:143:0.350:2
chr19	55014172	rs73070113	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:36,33:32:69:0.478:2	0/1:13,18:31:31:0.581:2	./.	0/1:26,47:31:73:0.644:2	./.	0/1:35,49:31:84:0.583:2	./.	0/1:57,36:32:93:0.387:2	0/1:46,43:32:89:0.483:2	./.	./.
chr19	55019261	rs61737751	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,44:31:92:0.478:2	./.	./.	./.	./.
chr19	55019371	rs61737870	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,35:33:84:0.417:2	./.	./.	./.	./.
chr19	55020233	rs149731338	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,15:32:35:0.429:2	0/1:19,16:30:35:0.457:2	./.	./.	./.	0/1:35,20:31:55:0.364:2	./.	./.	0/1:25,24:33:49:0.490:2	0/1:21,23:32:44:0.523:2	./.
chr19	55021777	rs62131570	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,35:33:114:0.307:2	0/1:78,27:33:105:0.257:2	./.
chr19	55044309	rs183905041	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,20:30:46:0.435:2	./.	./.	./.	./.	./.
chr19	55045042	rs61739186	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:12,39:32:51:0.765:2	0/1:22,10:31:32:0.313:2	./.	0/1:36,31:30:67:0.463:2	./.	./.	0/1:48,43:31:91:0.473:2	0/1:50,48:31:98:0.490:2	0/1:0,70:32:70:1.00:2	0/1:2,71:32:73:0.973:2	./.
chr19	55048270	rs17606836	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,30:31:66:0.455:2	0/1:41,10:31:51:0.196:2	./.	./.	0/1:41,22:30:63:0.349:2	./.	./.	./.
chr19	55053765	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:31:154:0.026:2	./.	./.	./.
chr19	55054628	rs78107621	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,33:32:89:0.371:2	0/1:69,32:32:101:0.317:2	./.	./.	./.
chr19	55085345	rs199965444	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:99,8:31:107:0.075:2	0/1:111,5:32:116:0.043:2	./.	0/1:104,12:32:116:0.103:2	./.	./.	./.
chr19	55085589	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,7:32:24:0.292:2	0/1:23,4:32:27:0.148:2	./.	0/1:31,4:28:35:0.114:2	./.	./.	./.
chr19	55085611	rs200805388	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,6:29:26:0.231:2	0/1:16,4:30:20:0.200:2	./.	0/1:32,4:30:36:0.111:2	./.	./.	./.
chr19	55086249	rs45523736	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,46:33:95:0.484:2	0/1:48,26:32:74:0.351:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	55086775	rs1052120	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,158:33:158:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,179:32:179:1.00:2	0/1:0,127:32:127:1.00:2	0/1:0,186:32:186:1.00:2	0/1:3,129:32:132:0.977:2	0/1:0,174:32:174:1.00:2	0/1:0,185:33:185:1.00:2	0/1:0,158:33:158:1.00:2	0/1:0,183:32:183:1.00:2
chr19	55086802	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:123,4:31:127:0.031:2	./.	./.	./.	./.	./.	./.
chr19	55086812	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.	./.	./.	./.	./.	./.
chr19	55086949	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:30:70:0.057:2	./.	./.
chr19	55086955	rs145792151	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:30:71:0.056:2	./.	./.
chr19	55086956	rs147792378	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:32:72:0.056:2	./.	./.
chr19	55087313	rs7249811	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,25:31:71:0.352:2	0/1:52,22:32:74:0.297:2	./.	0/1:53,47:31:100:0.470:2	./.	./.	./.
chr19	55098715	rs149580797	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:156,4:33:160:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr19	55105681	rs187746152	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,35:33:81:0.432:2
chr19	55105706	rs117371487	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,33:30:62:0.532:2	./.	./.	./.	./.	./.	./.	./.
chr19	55105722	rs28524012	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,6:34:64:0.094:2	./.	./.	./.
chr19	55105727	rs28469702	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:28:58:0.069:2	./.	0/1:60,5:31:65:0.077:2	./.	./.	./.
chr19	55105743	rs1974982	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,6:29:56:0.107:2	./.	0/1:53,6:30:59:0.102:2	./.	./.	./.
chr19	55105923	rs10416264	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,16:33:30:0.533:2	0/1:44,19:32:63:0.302:2	./.	0/1:28,22:32:50:0.440:2	./.	./.	./.
chr19	55105962	rs182094020	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,4:32:18:0.222:2
chr19	55106288	rs147848714	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:133,6:34:139:0.043:2	./.	./.	./.	0/1:150,9:33:159:0.057:2	0/1:181,4:32:185:0.022:2	0/1:155,12:33:167:0.072:2	./.	./.	./.	./.
chr19	55106317	rs10416917	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,67:29:169:0.396:2	0/1:86,92:29:178:0.517:2	./.	0/1:76,69:29:145:0.476:2	./.	./.	./.
chr19	55106663	rs10417589	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:107,40:29:147:0.272:2	0/1:89,66:29:155:0.426:2	./.	0/1:77,76:30:153:0.497:2	./.	./.	./.
chr19	55106778	rs10418391	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:85,52:31:137:0.380:2	0/1:101,66:31:167:0.395:2	./.	0/1:97,89:31:186:0.478:2	./.	./.	./.
chr19	55106865	rs373854	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,52:32:114:0.456:2	0/1:98,51:33:149:0.342:2	./.	0/1:63,64:32:127:0.504:2	./.	./.	./.
chr19	55107308	rs35534776	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,11:30:53:0.208:2	./.	0/1:41,14:33:55:0.255:2	./.	./.	./.
chr19	55107313	rs36029771	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,3:32:42:0.071:2	0/1:38,10:30:48:0.208:2	./.	0/1:39,13:34:52:0.250:2	./.	./.	./.
chr19	55107335	rs201805020	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:54,4:31:60:0.069:2	./.	./.	0/1:87,8:29:95:0.084:2	0/1:18,18:29:36:0.500:2	0/1:43,7:29:50:0.140:2	0/1:48,11:30:59:0.186:2	0/1:31,12:29:43:0.279:2	./.	./.	0/1:77,9:30:86:0.105:2
chr19	55107336	rs34058364	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,3:33:41:0.073:2	./.	./.	./.
chr19	55107397	rs149029653	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:26,4:28:30:0.133:2	./.	./.	./.	0/1:10,4:29:14:0.286:2	./.	./.	./.	./.	./.	./.
chr19	55142739	rs1985501	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:16,16:30:32:0.500:2	0/1:15,6:26:21:0.286:2	./.	./.	0/1:1,6:31:7:0.857:2	./.	0/1:9,14:29:23:0.609:2	0/1:19,12:29:31:0.387:2	./.	0/1:18,19:27:37:0.514:2	./.
chr19	55143083	rs1061679	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:76,45:32:121:0.372:2	0/1:40,31:32:71:0.437:2	0/1:1,15:33:16:0.938:2	./.	0/1:5,111:32:116:0.957:2	./.	0/1:78,30:32:109:0.278:2	0/1:109,89:32:198:0.449:2	./.	0/1:106,81:32:187:0.433:2	./.
chr19	55143156	rs12462774	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:87,38:32:125:0.304:2	0/1:41,35:32:76:0.461:2	0/1:12,5:33:17:0.294:2	./.	0/1:111,48:31:159:0.302:2	./.	0/1:112,47:32:159:0.296:2	./.	./.	./.	./.
chr19	55143157	rs12460501	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:87,38:31:125:0.304:2	0/1:40,35:31:75:0.467:2	0/1:12,5:32:17:0.294:2	./.	0/1:110,48:30:158:0.304:2	./.	0/1:114,47:32:161:0.292:2	./.	./.	./.	./.
chr19	55143452	rs1061680	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:48,37:32:85:0.435:2	0/1:20,18:32:38:0.474:2	0/1:0,10:32:10:1.00:2	./.	0/1:32,38:32:70:0.543:2	./.	0/1:40,44:32:84:0.524:2	./.	./.	0/1:24,33:32:57:0.579:2	./.
chr19	55143491	rs1061681	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:58,59:31:117:0.504:2	0/1:25,24:30:49:0.490:2	0/1:0,14:32:14:1.00:2	./.	0/1:49,59:31:108:0.546:2	./.	0/1:63,68:32:131:0.519:2	0/1:162,7:31:169:0.041:2	./.	0/1:37,40:31:77:0.519:2	./.
chr19	55143596	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:179,6:30:185:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr19	55144141	rs10425827	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:30:49:0.082:2	./.	./.	./.	./.	./.	./.	0/1:72,13:33:85:0.153:2	./.	0/1:89,11:32:100:0.110:2
chr19	55144147	rs74906426	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:26:47:0.085:2	./.	./.	./.	./.	./.	./.	0/1:69,13:32:82:0.159:2	./.	0/1:89,11:31:100:0.110:2
chr19	55144154	rs1045818	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,9:30:93:0.097:2	0/1:64,11:28:75:0.147:2	0/1:98,18:29:116:0.155:2	./.	0/1:108,10:30:119:0.085:2	./.	./.	0/1:92,6:30:98:0.061:2
chr19	55144186	rs272423	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,30:30:56:0.536:2	0/1:22,17:30:39:0.436:2	./.	0/1:7,49:31:56:0.875:2	0/1:33,15:30:48:0.313:2	0/1:12,56:31:68:0.824:2	0/1:17,14:31:31:0.452:2	0/1:10,71:31:81:0.877:2	0/1:0,49:32:49:1.00:2	0/1:23,34:31:57:0.596:2	0/1:20,48:31:68:0.706:2
chr19	55144208	rs201552016	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,4:28:37:0.108:2	./.	./.	0/1:31,4:30:35:0.114:2	0/1:50,6:30:56:0.107:2	./.	./.	./.	./.	0/1:33,13:32:46:0.283:2
chr19	55145410	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:30:105:0.038:2	./.	0/1:61,4:32:67:0.062:2	./.	./.	./.
chr19	55146565	rs10416070	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,19:32:91:0.209:2	./.	./.	0/1:124,39:32:163:0.239:2	./.	./.	./.
chr19	55146701	rs369798260	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:31:38:0.079:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	55146728	rs139400692	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,3:33:41:0.073:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	55147071	rs10421688	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,36:29:61:0.590:2	./.	./.	0/1:39,47:29:86:0.547:2	./.	./.	./.
chr19	55147074	rs10421874	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,36:31:58:0.621:2	./.	./.	0/1:37,49:32:86:0.570:2	./.	./.	./.
chr19	55147381	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:31:40:0.100:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	55147504	rs35869117	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,4:30:106:0.038:2	./.	./.	0/1:147,8:27:156:0.052:2	./.	./.	./.
chr19	55147508	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,8:30:157:0.051:2	./.	./.	./.
chr19	55147509	rs113420280	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,8:32:157:0.051:2	./.	./.	./.
chr19	55147987	rs41308744	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,18:32:192:0.094:2	0/1:164,24:31:188:0.128:2	0/1:169,18:33:188:0.096:2	0/1:155,34:32:189:0.180:2	./.
chr19	55147988	rs202204734	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,19:30:191:0.099:2	0/1:161,24:30:185:0.130:2	0/1:171,18:32:189:0.095:2	0/1:153,34:31:187:0.182:2	./.
chr19	55148043	rs28414191	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,4:31:113:0.035:2	./.	./.	./.	./.	./.	./.
chr19	55148045	rs28409473	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,4:32:113:0.035:2	./.	./.	./.	./.	./.	./.
chr19	55148076	rs62133433	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,5:32:93:0.054:2	./.	0/1:158,5:34:163:0.031:2	0/1:111,4:33:115:0.035:2	./.	0/1:115,9:32:124:0.073:2	./.
chr19	55148242	rs1061684	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,17:30:28:0.607:2	./.	./.	./.	./.	./.	./.	0/1:92,57:31:149:0.383:2	./.
chr19	55148249	rs16985478	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:159,4:32:163:0.025:2	./.	0/1:12,16:30:28:0.571:2	./.	./.	0/1:184,4:33:188:0.021:2	./.	./.	./.	0/1:83,62:31:145:0.428:2	0/1:147,7:31:154:0.045:2
chr19	55174498	rs28366008	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,4:33:23:0.174:2	0/1:8,11:32:19:0.579:2	0/1:20,17:32:37:0.459:2	0/1:18,9:33:27:0.333:2	./.	0/1:8,12:32:20:0.600:2
chr19	55174957	rs117878945	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,35:32:64:0.547:2	./.
chr19	55175009	rs11540761	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:34,49:30:83:0.590:2	0/1:21,19:31:40:0.475:2	0/1:4,4:31:8:0.500:2	./.	0/1:29,15:29:44:0.341:2	./.	./.	0/1:85,4:30:89:0.045:2	./.	./.	./.
chr19	55175058	rs201511126	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:33,3:32:36:0.083:2	0/1:18,3:31:21:0.143:2	./.	./.	0/1:28,6:31:34:0.176:2	./.	0/1:28,3:32:31:0.097:2	0/1:39,12:31:51:0.235:2	./.	0/1:48,9:30:57:0.158:2	0/1:52,5:32:57:0.088:2
chr19	55175740	rs3745871	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:48,33:32:81:0.407:2	0/1:13,13:31:26:0.500:2	./.	./.	0/1:23,24:32:47:0.511:2	0/1:44,24:31:68:0.353:2	0/1:24,29:31:53:0.547:2	0/1:35,31:31:66:0.470:2	0/1:33,34:32:67:0.507:2	0/1:40,31:31:71:0.437:2	./.
chr19	55176262	rs731170	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:32:68:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,54:32:54:1.00:2	0/1:55,36:32:91:0.396:2	0/1:26,26:31:52:0.500:2	0/1:53,49:31:104:0.480:2	0/1:41,47:32:89:0.534:2	0/1:0,62:32:62:1.00:2	0/1:43,38:31:81:0.469:2
chr19	55178162	rs11574576	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,30:32:49:0.612:2	0/1:10,19:32:29:0.655:2	0/1:5,4:32:9:0.444:2	0/1:38,43:32:81:0.531:2	0/1:15,19:31:34:0.559:2	./.	./.	0/1:28,44:32:72:0.611:2	0/1:22,38:32:60:0.633:2	./.	./.
chr19	55179128	rs2764337	A	G,C	.	PASS	AC=1,2;AF=0.111,0.222;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0/2:27:21:0.286:2	0/2:30:183:0.033:2	./.	./.	./.	0/1:27:192:0.031:2	./.	./.	./.
chr19	55179129	rs11574589	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,6:28:21:0.286:2	0/1:175,6:26:181:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr19	55179145	rs61738946	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:168,7:31:175:0.040:2	./.	./.	./.	./.	./.	0/1:168,9:32:177:0.051:2	./.
chr19	55179172	rs11574590	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,3:32:17:0.176:2	0/1:157,17:32:174:0.098:2	./.	./.	0/1:162,7:30:169:0.041:2	0/1:177,7:31:185:0.038:2	0/1:166,16:33:182:0.088:2	0/1:153,32:31:185:0.173:2	./.
chr19	55179176	rs144033928	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,6:32:186:0.032:2
chr19	55179184	rs142100665	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:168,16:29:184:0.087:2	./.	./.	0/1:170,23:29:193:0.119:2	./.	./.	./.
chr19	55179186	rs143761941	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:167,16:32:183:0.087:2	./.	./.	0/1:169,22:33:191:0.115:2	./.	./.	./.
chr19	55179229	rs11574592	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,19:32:117:0.162:2	./.	./.	0/1:155,20:31:175:0.114:2	./.	./.	./.
chr19	55179364	rs1048801	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:65,44:29:109:0.404:2	0/1:39,17:28:56:0.304:2	./.	0/1:86,60:28:146:0.411:2	0/1:77,37:29:114:0.325:2	0/1:61,70:29:131:0.534:2	0/1:5,107:28:112:0.955:2	0/1:108,70:29:178:0.393:2	./.	./.	./.
chr19	55236056	rs375543145	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:31:5:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	55236069	rs140896214	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,3:29:9:0.333:2	0/1:5,4:32:9:0.444:2	./.	0/1:6,11:30:17:0.647:2	0/1:4,3:34:7:0.429:2	0/1:0,16:32:16:1.00:2	./.	0/1:1,7:31:8:0.875:2	./.	./.	0/1:0,8:33:8:1.00:2
chr19	55236747	rs142173704	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,12:33:22:0.545:2	./.
chr19	55237603	rs200419879	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,39:31:73:0.534:2	./.	./.	./.	./.	./.
chr19	55237616	rs143765860	C	T,A	.	PASS	AC=6,1;AF=0.286,0.048;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9-variant10-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0/1:31:45:0.467:2	0/1:32:34:0.500:2	./.	0/1:32:80:0.488:2	0/1:32:44:0.273:2	0/1:30:71:0.451:2	0/2:31:78:0.321:2	./.	./.	./.	0/1:32:71:0.986:2
chr19	55239129	rs144626680	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:5,15:32:20:0.750:2	0/1:7,9:32:16:0.563:2	./.	0/1:10,13:31:23:0.565:2	./.	0/1:32,15:31:47:0.319:2	./.	0/1:18,24:32:42:0.571:2	./.	./.	0/1:26,19:33:45:0.422:2
chr19	55239168	rs151236204	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,26:31:33:0.788:2	./.	0/1:0,24:30:24:1.00:2	0/1:37,37:31:74:0.500:2	./.	./.	./.
chr19	55239176	rs199609975	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,24:31:82:0.293:2	./.	./.	./.	./.	0/1:40,27:29:67:0.403:2
chr19	55239237	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,4:29:59:0.068:2	./.
chr19	55239263	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,10:31:51:0.196:2	./.	./.	./.	./.	./.	./.
chr19	55239342	rs368077219	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,24:31:76:0.316:2	./.	0/1:35,38:32:73:0.521:2	0/1:65,44:33:109:0.404:2	./.	./.	./.
chr19	55241080	rs200082232	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:3,9:30:12:0.750:2	0/1:13,15:29:28:0.536:2	./.	0/1:20,7:31:27:0.259:2	./.	0/1:14,14:29:28:0.500:2	./.	0/1:19,21:29:40:0.525:2	./.	./.	0/1:0,24:29:24:1.00:2
chr19	55241107	rs141701750	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:5,9:32:14:0.643:2	0/1:10,12:32:22:0.545:2	./.	0/1:18,6:31:24:0.250:2	./.	0/1:14,17:31:31:0.548:2	./.	0/1:25,18:32:43:0.419:2	./.	./.	0/1:0,23:31:23:1.00:2
chr19	55241172	rs150531123	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,19:31:32:0.594:2	./.	0/1:16,16:32:32:0.500:2	0/1:19,26:32:45:0.578:2	./.	0/1:12,16:32:28:0.571:2	./.
chr19	55241174	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,9:31:24:0.375:2	./.	./.	./.	./.	./.
chr19	55241209	rs371229508	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:10,8:32:18:0.444:2	0/1:2,8:32:10:0.800:2	./.	0/1:17,7:32:24:0.292:2	./.	0/1:12,9:30:21:0.429:2	./.	0/1:17,12:32:29:0.414:2	./.	./.	0/1:0,17:32:17:1.00:2
chr19	55246731	rs77241525	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:85,59:32:144:0.410:2	0/1:44,51:32:95:0.537:2	0/1:24,20:31:44:0.455:2	./.	./.	./.	./.	0/1:121,76:31:197:0.386:2	./.	0/1:1,67:31:68:0.985:2	0/1:2,185:31:187:0.989:2
chr19	55246739	rs78691806	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,109:33:113:0.965:2	./.	./.
chr19	55246812	rs180893263	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,74:32:85:0.871:2	./.	0/1:68,28:33:96:0.292:2	./.	./.	./.	./.
chr19	55247306	rs62132702	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,25:33:34:0.735:2	./.	0/1:0,9:33:9:1.00:2	0/1:34,14:31:48:0.292:2
chr19	55247353	rs79729165	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	./.
chr19	55247449	rs199554226	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,4:31:7:0.571:2	./.	./.	./.	./.	./.	./.
chr19	55249990	rs377409398	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,6:31:24:0.250:2	./.	./.	./.	./.
chr19	55253521	rs149224427	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,3:34:3:1.00:2	./.	0/1:38,3:32:41:0.073:2	./.	./.	./.	./.
chr19	55253567	rs138897134	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,6:30:7:0.857:2	./.	0/1:45,17:28:62:0.274:2	./.	./.	./.	./.
chr19	55263898	rs1049267	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:53,49:30:103:0.480:2	0/1:32,36:31:69:0.529:2	0/1:12,5:31:17:0.294:2	./.	0/1:3,56:29:59:0.949:2	./.	0/1:56,58:31:114:0.509:2	0/1:65,81:31:147:0.555:2	./.	0/1:63,63:31:128:0.500:2	0/1:0,157:30:159:1.00:2
chr19	55281275	rs185952251	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,39:31:39:1.00:2	./.	./.
chr19	55281315	rs2304224	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:31,23:31:54:0.426:2	0/1:12,9:30:21:0.429:2	0/1:3,11:31:14:0.786:2	./.	./.	./.	./.	0/1:66,67:30:133:0.504:2	./.	0/1:30,24:31:54:0.444:2	0/1:0,39:31:39:1.00:2
chr19	55282274	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,3:32:34:0.088:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	55284824	rs139078925	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:17,4:33:21:0.190:2	./.	./.	./.	./.	./.	./.	0/1:24,3:31:27:0.111:2	./.	0/1:23,7:31:30:0.233:2	./.
chr19	55284858	rs116929762	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:27,8:30:35:0.229:2	0/1:14,5:32:19:0.263:2	./.	./.	0/1:1,3:30:4:0.750:2	./.	0/1:44,4:32:48:0.083:2	0/1:44,6:29:50:0.120:2	./.	0/1:35,8:31:43:0.186:2	0/1:0,19:31:19:1.00:2
chr19	55286650	rs11673144	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:9,3:33:12:0.250:2	0/1:9,3:31:12:0.250:2	./.	./.	./.	./.	0/1:11,3:31:14:0.214:2	0/1:5,5:31:10:0.500:2	./.	0/1:5,5:27:10:0.500:2	0/1:0,7:33:7:1.00:2
chr19	55286665	.	T	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,3:29:21:0.143:2	0/1:14,4:32:18:0.222:2	0/1:23,6:34:29:0.207:2	./.	0/1:6,5:32:11:0.455:2
chr19	55294927	.	A	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:22,26:29:48:0.542:2	0/1:21,12:28:33:0.364:2	./.	./.	0/1:0,18:28:18:1.00:2	./.	0/1:22,23:28:45:0.511:2	0/1:25,29:29:54:0.537:2	./.	0/1:28,26:29:54:0.481:2	0/1:1,82:29:83:0.988:2
chr19	55295215	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,33:30:75:0.440:2	./.	./.	./.	./.	./.
chr19	55297935	rs185375533	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,42:29:68:0.618:2	./.	0/1:37,30:29:67:0.448:2	./.	./.	./.	./.
chr19	55299747	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,3:30:29:0.103:2	./.	0/1:30,3:32:33:0.091:2	./.	./.	./.	0/1:24,4:29:28:0.143:2
chr19	55299773	rs143182194	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:9,14:29:23:0.609:2	0/1:11,13:30:24:0.542:2	./.	./.	./.	./.	./.	0/1:23,23:27:46:0.500:2	./.	0/1:22,20:31:42:0.476:2	0/1:0,25:28:25:1.00:2
chr19	55301617	rs77919587	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2
chr19	55301682	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,13:31:32:0.406:2	./.	./.	./.	./.
chr19	55309464	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:33:109:0.037:2	./.	./.
chr19	55317454	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,6:30:12:0.500:2	./.	./.	./.	./.	./.	./.
chr19	55317456	rs149046820	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,6:32:15:0.400:2	./.	0/1:9,9:32:18:0.500:2	0/1:3,7:31:10:0.700:2	0/1:6,4:31:10:0.400:2	./.	0/1:14,10:32:24:0.417:2
chr19	55317524	rs374413343	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:29:13:0.462:2	0/1:5,9:33:14:0.643:2	./.	./.	./.	0/1:30,10:34:40:0.250:2	./.	./.	./.	./.	0/1:21,18:31:39:0.462:2
chr19	55317669	rs200231256	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,8:29:11:0.727:2	./.	./.	./.	0/1:2,4:35:6:0.667:2	./.	0/1:1,4:34:5:0.800:2
chr19	55324635	rs146935134	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,5:33:109:0.046:2
chr19	55325455	rs199895402	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,17:30:37:0.459:2	0/1:19,21:30:40:0.525:2	0/1:7,21:30:28:0.750:2	./.	0/1:15,17:31:32:0.531:2
chr19	55327930	rs142023169	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,4:28:10:0.400:2
chr19	55328023	rs149862889	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,21:31:21:1.00:2	./.	0/1:20,14:31:34:0.412:2	./.	0/1:0,26:30:26:1.00:2	0/1:1,16:32:17:0.941:2	0/1:0,18:31:18:1.00:2	./.
chr19	55328959	rs149236621	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:32:22:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,4:26:4:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,35:31:35:1.00:2	./.	0/1:0,24:32:24:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,34:31:34:1.00:2
chr19	55328993	rs1142881	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,7:33:25:0.280:2	./.	0/1:59,4:35:63:0.063:2	0/1:22,3:32:25:0.120:2	0/1:16,11:32:27:0.407:2	./.	0/1:22,12:34:34:0.353:2
chr19	55329021	rs1142882	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,10:31:25:0.400:2	./.	0/1:57,5:28:62:0.081:2	0/1:22,3:30:25:0.120:2	0/1:11,8:32:19:0.421:2	./.	0/1:24,12:30:36:0.333:2
chr19	55329783	rs642893	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,8:33:29:0.276:2	./.	0/1:20,6:33:26:0.231:2	0/1:18,4:33:22:0.182:2	0/1:13,3:33:16:0.188:2	./.	0/1:10,3:34:13:0.231:2
chr19	55329831	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,21:31:34:0.618:2	./.	./.	./.
chr19	55329854	rs144994606	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,17:31:17:1.00:2	0/1:0,11:32:11:1.00:2	./.	./.	0/1:26,10:31:36:0.278:2	0/1:38,19:31:57:0.333:2	./.	./.	./.	./.	0/1:11,15:33:26:0.577:2
chr19	55329892	rs149123986	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,16:31:17:0.941:2	0/1:1,7:31:8:0.875:2	./.	./.	./.	0/1:30,20:29:50:0.400:2	./.	./.	./.	./.	0/1:12,18:29:30:0.600:2
chr19	55329901	rs643347	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,15:29:43:0.349:2	./.	0/1:35,10:30:45:0.222:2	0/1:25,20:29:45:0.444:2	0/1:27,15:31:42:0.357:2	./.	0/1:20,12:27:32:0.375:2
chr19	55329922	rs1049150	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,13:31:40:0.325:2	./.	0/1:31,9:31:40:0.225:2	0/1:29,23:32:52:0.442:2	0/1:24,15:33:39:0.385:2	./.	0/1:17,16:31:33:0.485:2
chr19	55330019	rs143159382	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:33:7:0.857:2	0/1:1,3:29:4:0.750:2	./.	./.	./.	0/1:11,7:32:18:0.389:2	./.	./.	./.	./.	0/1:14,4:29:18:0.222:2
chr19	55331300	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,10:21:84:0.119:2	./.	0/1:105,7:22:112:0.063:2	./.	./.	./.	./.	./.
chr19	55331419	rs143886704	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:4,23:32:27:0.852:2	0/1:2,16:32:18:0.889:2	./.	0/1:3,20:30:23:0.870:2	./.	0/1:0,45:31:45:1.00:2	./.	0/1:16,25:32:41:0.610:2	0/1:19,28:31:47:0.596:2	0/1:2,30:31:32:0.938:2	0/1:16,20:31:36:0.556:2
chr19	55333096	rs181336705	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,6:33:10:0.600:2	./.	0/1:8,6:32:14:0.429:2
chr19	55333139	rs202189595	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,6:30:21:0.286:2	0/1:11,10:29:21:0.476:2	./.	0/1:13,9:27:22:0.409:2
chr19	55333246	rs146719656	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:7,3:34:10:0.300:2	./.	./.	0/1:6,4:34:10:0.400:2	./.	0/1:0,12:31:12:1.00:2	./.	0/1:8,3:33:11:0.273:2	0/1:8,5:33:13:0.385:2	./.	0/1:4,3:30:7:0.429:2
chr19	55333275	rs150084719	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:32:12:0.500:2	./.	./.	./.	./.	0/1:0,5:31:5:1.00:2	./.	0/1:5,4:32:9:0.444:2	0/1:5,5:32:10:0.500:2	./.	0/1:4,3:31:7:0.429:2
chr19	55336474	rs140664096	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:152,20:30:172:0.116:2	0/1:87,16:31:103:0.155:2	./.	0/1:181,10:33:191:0.052:2	./.	0/1:3,16:31:19:0.842:2	./.	./.	0/1:181,12:32:193:0.062:2	0/1:180,7:32:187:0.037:2	0/1:165,17:32:182:0.093:2
chr19	55341556	rs1130472	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,15:31:39:0.385:2	./.	./.	./.	./.	./.
chr19	55341575	rs1130513	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,20:33:20:1.00:2	0/1:0,4:30:4:1.00:2	./.	./.	./.	0/1:26,17:32:43:0.395:2	./.	./.	./.	./.	0/1:21,14:33:35:0.400:2
chr19	55349031	rs58731871	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,18:31:18:1.00:2	./.	0/1:15,15:31:30:0.500:2	./.	0/1:24,34:31:58:0.586:2	0/1:37,28:32:65:0.431:2	0/1:1,30:32:31:0.968:2	./.
chr19	55349273	rs1130492	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,66:30:66:1.00:2	./.	0/1:71,52:30:123:0.423:2	./.	0/1:94,58:30:152:0.382:2	0/1:74,55:30:129:0.426:2	0/1:2,66:30:68:0.971:2	./.
chr19	55350979	rs4806590	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,38:33:38:1.00:2	0/1:0,13:33:13:1.00:2	./.	./.	./.	0/1:42,48:32:90:0.533:2	./.	./.	./.	./.	0/1:14,33:32:47:0.702:2
chr19	55359426	rs200936965	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,3:33:14:0.214:2	./.	0/1:9,5:31:14:0.357:2	./.	./.	0/1:11,7:34:18:0.389:2	./.	./.
chr19	55363719	rs3188286	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:30:8:1.00:2	0/1:0,4:31:4:1.00:2	./.	./.	./.	0/1:7,6:31:13:0.462:2	./.	./.	./.	./.	0/1:5,6:29:11:0.545:2
chr19	55365302	rs202205566	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,8:31:36:0.222:2	./.	./.	./.	./.	./.	./.
chr19	55365316	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:32:73:0.055:2	./.	./.
chr19	55365320	rs145326846	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,21:32:40:0.525:2	0/1:33,31:32:64:0.484:2	0/1:34,39:33:73:0.534:2	./.	0/1:41,35:31:76:0.461:2
chr19	55365343	rs375464774	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,29:30:59:0.500:2	0/1:17,18:30:35:0.514:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,37:30:83:0.451:2
chr19	55367311	rs201726108	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,16:32:43:0.372:2	./.	./.	./.	./.	./.	./.
chr19	55367314	rs201687607	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,22:32:45:0.489:2	./.	./.	./.	./.	./.	./.	./.
chr19	55378008	rs3745902	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:17,21:30:38:0.553:2	0/1:17,11:31:28:0.393:2	./.	0/1:2,38:31:40:0.950:2	./.	./.	./.	./.	0/1:17,36:32:53:0.679:2	0/1:22,9:31:31:0.290:2	./.
chr19	55396900	rs1865096	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,23:31:51:0.451:2	0/1:16,10:31:26:0.385:2	./.	0/1:0,54:32:54:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,37:32:37:1.00:2
chr19	55396913	rs11666735	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,17:29:36:0.472:2	./.
chr19	55401170	rs16986050	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,10:31:26:0.385:2	0/1:10,14:31:24:0.583:2	./.	./.	0/1:13,16:32:29:0.552:2	0/1:10,15:33:25:0.600:2	0/1:10,10:33:20:0.500:2	./.
chr19	55418054	rs2278428	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,19:32:31:0.613:2	0/1:19,16:32:35:0.457:2	./.	./.	./.	./.
chr19	55420801	rs3765013	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,13:32:31:0.419:2	0/1:17,21:32:38:0.553:2	0/1:12,15:32:27:0.556:2	0/1:11,12:32:23:0.522:2	./.	0/1:12,8:35:20:0.400:2	./.	./.
chr19	55423530	rs73619969	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,71:30:141:0.504:2	0/1:67,20:30:87:0.230:2	0/1:80,55:30:135:0.407:2	0/1:54,27:29:81:0.333:2	./.	0/1:98,65:32:163:0.399:2	./.	./.
chr19	55435189	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:128:0.031:2	./.	./.
chr19	55441902	rs269950	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:27,16:31:43:0.372:2	0/1:13,3:32:16:0.188:2	./.	./.	0/1:1,16:31:17:0.941:2	0/1:0,25:31:25:1.00:2	./.	0/1:26,16:29:42:0.381:2	0/1:12,27:30:39:0.692:2	0/1:0,25:31:25:1.00:2	./.
chr19	55441995	rs269951	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:32,33:32:65:0.508:2	0/1:27,15:32:42:0.357:2	./.	./.	0/1:4,36:32:40:0.900:2	0/1:0,67:32:67:1.00:2	./.	0/1:36,46:32:82:0.561:2	0/1:32,40:34:72:0.556:2	0/1:0,54:32:54:1.00:2	./.
chr19	55450462	rs73055288	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,31:31:57:0.544:2	./.	./.	./.	./.	./.	./.	./.
chr19	55450696	rs775880	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,15:31:111:0.135:2	./.	./.	./.	0/1:37,18:31:55:0.327:2	./.
chr19	55450727	rs775881	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,13:30:47:0.277:2	./.
chr19	55450746	rs61747414	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,30:31:47:0.638:2	./.
chr19	55451050	rs10418277	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:31:10:0.500:2	./.	0/1:51,48:30:99:0.485:2	./.	0/1:51,29:29:80:0.363:2	./.	0/1:62,60:33:122:0.492:2	./.	0/1:26,35:31:61:0.574:2
chr19	55451135	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,7:32:117:0.060:2	./.
chr19	55451170	rs201973549	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:144,4:31:148:0.027:2	./.	./.	./.	./.	0/1:107,7:30:114:0.061:2	./.
chr19	55451232	rs775882	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,9:32:13:0.692:2	./.	0/1:82,40:31:122:0.328:2	./.	0/1:89,37:32:126:0.294:2	./.	0/1:69,41:32:110:0.373:2	0/1:54,56:32:110:0.509:2	0/1:39,36:32:75:0.480:2
chr19	55451797	rs775883	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:33:10:0.300:2	./.	0/1:38,35:31:73:0.479:2	./.	0/1:60,33:31:93:0.355:2	./.	0/1:71,46:32:117:0.393:2	0/1:1,83:30:84:0.988:2	0/1:55,44:32:99:0.444:2
chr19	55481398	rs269912	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,21:33:39:0.538:2	0/1:12,10:32:22:0.455:2	./.	0/1:2,75:32:77:0.974:2	0/1:42,28:31:70:0.400:2	./.	./.	./.	./.	0/1:32,35:32:67:0.522:2	./.
chr19	55485899	rs2217659	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,15:32:27:0.556:2	./.	./.	./.	0/1:39,28:32:67:0.418:2
chr19	55493728	rs17699678	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,20:32:46:0.435:2	./.	./.
chr19	55494126	rs61735077	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,35:29:74:0.473:2	0/1:16,19:28:35:0.543:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	55494188	rs3826883	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:52,52:30:104:0.500:2	0/1:29,15:32:44:0.341:2	./.	0/1:14,103:30:117:0.880:2	0/1:82,69:31:151:0.457:2	./.	./.	./.	./.	0/1:46,45:31:91:0.495:2	./.
chr19	55494223	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,51:32:99:0.515:2	./.
chr19	55494308	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,7:32:90:0.078:2	./.	./.	./.	./.
chr19	55494320	rs147207921	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,63:30:119:0.529:2	./.	./.	./.	./.	./.
chr19	55494651	rs34804158	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,30:30:45:0.667:2	0/1:13,26:30:39:0.667:2	./.	0/1:0,80:30:80:1.00:2	0/1:30,14:29:44:0.318:2	0/1:50,4:28:54:0.074:2	./.	./.	./.	0/1:20,25:30:45:0.556:2	./.
chr19	55494677	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.	./.	./.	./.
chr19	55494740	rs10412915	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,30:30:49:0.612:2	0/1:16,14:30:30:0.467:2	./.	0/1:1,75:30:76:0.987:2	0/1:29,34:30:63:0.540:2	0/1:40,24:30:64:0.375:2	./.	./.	./.	0/1:26,24:29:50:0.480:2	./.
chr19	55494881	rs11672113	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,59:33:108:0.546:2	0/1:38,52:32:90:0.578:2	0/1:5,14:32:19:0.737:2	0/1:0,165:33:165:1.00:2	0/1:2,184:32:186:0.989:2	./.	./.	0/1:88,80:32:168:0.476:2	./.	0/1:0,128:33:128:1.00:2	0/1:66,74:33:140:0.529:2
chr19	55496494	rs61733928	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,44:31:114:0.386:2	./.	./.	./.	./.	./.
chr19	55501870	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:35:124:0.032:2	./.
chr19	55501932	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,59:32:135:0.437:2	./.
chr19	55512137	rs12768	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,24:32:26:0.923:2	0/1:0,22:32:22:1.00:2	./.	./.	0/1:5,3:32:8:0.375:2	0/1:0,33:31:33:1.00:2	./.	0/1:0,12:32:12:1.00:2	./.	0/1:12,8:32:20:0.400:2	0/1:0,31:32:31:1.00:2
chr19	55512232	rs1043673	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,11:30:19:0.579:2	0/1:6,9:31:15:0.600:2	./.	0/1:0,17:31:17:1.00:2	0/1:0,10:31:10:1.00:2	0/1:11,17:30:28:0.607:2	./.	0/1:0,27:31:27:1.00:2	0/1:17,15:32:32:0.469:2	0/1:0,27:31:27:1.00:2	0/1:13,21:31:34:0.618:2
chr19	55525596	rs1654412	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	0/1:0,2:31:2:1.00:2
chr19	55525788	rs142053457	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,32:32:62:0.516:2	./.	./.	./.	./.
chr19	55525818	rs41275822	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:32:9:0.444:2	./.	./.	0/1:44,28:32:72:0.389:2	./.	./.	./.	./.	./.
chr19	55525894	rs1671151	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,23:33:25:0.920:2	0/1:0,33:33:33:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,55:33:55:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,51:32:51:1.00:2	0/1:26,16:32:43:0.381:2	0/1:2,44:33:46:0.957:2	0/1:28,8:30:36:0.222:2	0/1:0,38:33:38:1.00:2	0/1:1,30:32:31:0.968:2
chr19	55526345	rs1671152	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,8:31:8:1.00:2	0/1:0,6:30:6:1.00:2	./.	0/1:0,17:31:17:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,13:31:13:1.00:2	0/1:2,5:30:7:0.714:2	0/1:0,13:31:13:1.00:2	0/1:1,2:34:3:0.667:2	0/1:0,5:31:5:1.00:2	0/1:0,9:31:9:1.00:2
chr19	55526359	rs1654413	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,7:31:7:1.00:2	0/1:0,6:31:6:1.00:2	./.	0/1:0,16:31:16:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,9:30:9:1.00:2	0/1:2,3:32:5:0.600:2	0/1:1,8:33:9:0.889:2	./.	0/1:0,6:32:6:1.00:2	0/1:0,6:31:6:1.00:2
chr19	55526373	rs2304166	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,2:34:4:0.500:2	0/1:2,5:32:7:0.714:2	./.	0/1:0,9:32:9:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,5:30:5:1.00:2	./.	0/1:1,3:31:4:0.750:2	./.	0/1:0,4:33:4:1.00:2	0/1:0,2:33:2:1.00:2
chr19	55527081	rs2304167	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,37:31:38:0.974:2	0/1:0,17:32:17:1.00:2	0/1:0,2:31:2:1.00:2	0/1:1,46:31:47:0.979:2	0/1:0,32:31:32:1.00:2	0/1:0,45:31:45:1.00:2	0/1:22,27:32:49:0.551:2	0/1:1,44:31:45:0.978:2	0/1:26,17:33:43:0.395:2	0/1:0,39:32:39:1.00:2	0/1:0,50:31:50:1.00:2
chr19	55530035	rs1654416	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,95:33:97:0.979:2	0/1:0,60:32:60:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,124:31:124:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,117:32:117:1.00:2	0/1:47,33:31:80:0.413:2	0/1:0,157:32:158:1.00:2	0/1:98,79:33:178:0.446:2	0/1:0,92:32:92:1.00:2	0/1:0,131:32:131:1.00:2
chr19	55536595	rs1613662	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:33:38:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,47:31:47:1.00:2	0/1:18,37:32:55:0.673:2	0/1:0,54:31:54:1.00:2	0/1:25,40:33:65:0.615:2	0/1:0,49:31:49:1.00:2	0/1:0,71:31:72:1.00:2
chr19	55538980	rs1654425	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:30:38:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,39:30:39:1.00:2	0/1:35,22:31:57:0.386:2	0/1:0,25:30:25:1.00:2	0/1:0,31:30:31:1.00:2
chr19	55539049	rs5030705	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,66:31:68:0.971:2	0/1:38,28:31:66:0.424:2	0/1:86,4:32:90:0.044:2	./.	./.	0/1:69,35:32:104:0.337:2	0/1:42,21:32:63:0.333:2	./.
chr19	55539061	rs892089	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:32:64:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,80:32:80:1.00:2	0/1:77,49:32:126:0.389:2	0/1:1,94:32:95:0.989:2	0/1:66,37:32:103:0.359:2	0/1:0,63:32:63:1.00:2	0/1:1,80:32:81:0.988:2
chr19	55539072	rs892090	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:27:59:1.00:2	0/1:0,37:29:37:1.00:2	0/1:0,5:28:5:1.00:2	0/1:0,64:29:64:1.00:2	0/1:0,72:29:72:1.00:2	0/1:0,79:29:79:1.00:2	0/1:86,48:29:134:0.358:2	0/1:0,98:29:98:1.00:2	0/1:64,40:30:104:0.385:2	0/1:0,64:28:64:1.00:2	0/1:1,76:29:77:0.987:2
chr19	55543514	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,9:30:37:0.243:2	./.
chr19	55559715	rs2305543	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:3,53:30:56:0.946:2	0/1:1,42:31:43:0.977:2	./.	./.	./.	./.	0/1:59,56:30:115:0.487:2	./.	./.	./.	0/1:43,42:31:85:0.494:2
chr19	55559740	rs1059211	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,111:31:112:0.991:2	0/1:76,66:31:142:0.465:2	./.	./.	./.	0/1:63,64:32:127:0.504:2	0/1:50,44:31:94:0.468:2	./.
chr19	55568084	rs12608979	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,59:30:117:0.504:2
chr19	55568085	rs12609004	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,59:31:118:0.500:2
chr19	55570574	rs1654447	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:30:39:1.00:2	0/1:0,18:28:18:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,58:30:58:1.00:2	0/1:1,70:30:71:0.986:2	0/1:0,71:30:71:1.00:2	0/1:39,33:28:72:0.458:2	0/1:0,64:30:64:1.00:2	0/1:37,34:31:71:0.479:2	0/1:0,50:30:50:1.00:2	0/1:0,52:27:52:1.00:2
chr19	55574412	rs1654456	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr19	55587822	rs12609976	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:30:11:0.364:2	./.	./.	./.	./.	./.	./.	0/1:24,27:29:51:0.529:2	./.
chr19	55587841	rs201907908	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,37:32:63:0.587:2	./.	./.
chr19	55593865	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,5:26:73:0.068:2	./.	./.	./.	./.	./.
chr19	55594996	rs1628576	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:11,11:29:22:0.500:2	0/1:8,6:28:14:0.429:2	0/1:0,2:32:2:1.00:2	./.	./.	0/1:18,9:28:27:0.333:2	./.	./.	./.	0/1:11,12:25:23:0.522:2	./.
chr19	55598148	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,4:30:14:0.286:2	./.	./.	./.	./.	./.	./.	./.
chr19	55598724	rs1054940	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,4:32:9:0.444:2	0/1:11,4:33:15:0.267:2	0/1:0,5:33:5:1.00:2	0/1:0,13:33:13:1.00:2	0/1:7,6:31:13:0.462:2	0/1:1,26:32:27:0.963:2	./.	./.	./.	0/1:10,6:32:16:0.375:2	0/1:5,6:32:11:0.545:2
chr19	55614923	rs2532060	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,7:34:15:0.467:2	0/1:79,62:33:141:0.440:2	0/1:102,75:32:177:0.424:2	0/1:73,41:33:114:0.360:2	0/1:103,78:33:181:0.431:2	0/1:78,86:33:164:0.524:2	0/1:73,74:34:147:0.503:2	./.	0/1:36,44:33:80:0.550:2
chr19	55623903	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,5:18:24:0.208:2	./.	./.	./.	./.	./.
chr19	55624113	rs34521018	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,26:29:52:0.510:2	./.	./.	./.	./.	0/1:13,12:29:25:0.480:2
chr19	55644325	rs890868	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,10:31:10:1.00:2	0/1:0,14:28:14:1.00:2	./.	0/1:0,10:32:10:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,9:32:9:1.00:2
chr19	55653297	rs67795913	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,12:33:33:0.364:2	./.	0/1:13,10:31:23:0.435:2	./.
chr19	55656949	rs187180704	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,32:29:51:0.627:2	./.	0/1:23,32:30:55:0.582:2	./.
chr19	55658387	rs112562759	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,33:32:82:0.402:2	0/1:68,33:32:101:0.327:2	0/1:37,27:33:64:0.422:2	./.	./.
chr19	55665410	rs3729841	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,46:31:95:0.484:2	./.	./.	./.	0/1:70,47:33:117:0.402:2	./.	./.
chr19	55667647	rs3729711	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	./.	./.
chr19	55667958	rs73617692	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,51:32:107:0.477:2	./.	./.	./.	./.
chr19	55668509	rs3729836	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,31:31:66:0.470:2	./.	0/1:34,28:31:62:0.452:2	./.	0/1:22,21:32:43:0.488:2	0/1:19,14:31:33:0.424:2	./.
chr19	55668992	rs3729707	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,29:31:52:0.558:2	./.	./.	./.	./.
chr19	55671337	rs890872	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:31:59:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,75:30:75:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,72:30:72:1.00:2	0/1:0,70:30:70:1.00:2	0/1:0,82:31:82:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,81:31:81:1.00:2	0/1:0,67:31:67:1.00:2
chr19	55671374	rs891187	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,11:28:28:0.393:2	./.	0/1:15,10:30:25:0.400:2	./.	0/1:19,11:29:30:0.367:2	0/1:23,11:28:34:0.324:2	./.
chr19	55672470	rs2365725	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,4:32:12:0.333:2	./.	0/1:2,4:26:6:0.667:2	./.	0/1:6,5:34:11:0.455:2	0/1:1,6:29:7:0.857:2	./.
chr19	55672784	rs7260320	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,22:31:51:0.431:2	./.	0/1:17,14:32:31:0.452:2	./.	0/1:19,22:33:41:0.537:2	0/1:7,12:32:19:0.632:2	./.
chr19	55686305	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:33:115:0.035:2	./.	./.	./.	./.
chr19	55693244	rs2288419	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,70:29:144:0.486:2	0/1:66,38:29:104:0.365:2	./.
chr19	55697236	rs61735060	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,23:31:81:0.284:2	./.	./.
chr19	55697279	rs61734259	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:28,20:31:48:0.417:2	0/1:20,20:32:40:0.500:2	0/1:4,7:30:11:0.636:2	./.	0/1:67,61:30:128:0.477:2	0/1:75,48:30:123:0.390:2	0/1:98,66:31:164:0.402:2	./.	./.	0/1:33,37:32:70:0.529:2	./.
chr19	55697712	rs147881000	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,8:32:19:0.421:2	./.
chr19	55697889	rs1136578	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:23,17:33:40:0.425:2	0/1:23,4:28:27:0.148:2	0/1:4,4:31:8:0.500:2	./.	0/1:29,41:32:70:0.586:2	0/1:39,29:32:68:0.426:2	0/1:26,27:33:53:0.509:2	./.	./.	0/1:14,19:30:33:0.576:2	./.
chr19	55698955	rs36092369	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:31:12:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	55699454	rs890870	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:31:45:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,79:30:79:1.00:2	0/1:0,74:30:74:1.00:2	0/1:0,71:30:71:1.00:2	0/1:0,90:30:90:1.00:2	0/1:0,76:30:76:1.00:2	0/1:0,84:31:84:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,55:31:55:1.00:2
chr19	55702910	rs2288523	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,32:30:88:0.364:2	./.	./.	./.	./.	0/1:55,44:32:99:0.444:2	./.	./.
chr19	55708557	rs2288521	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,69:32:153:0.454:2	0/1:27,42:32:69:0.609:2	0/1:0,25:33:25:1.00:2	0/1:97,90:33:187:0.481:2	0/1:1,175:33:176:0.994:2	0/1:0,169:32:169:1.00:2	0/1:0,169:33:169:1.00:2	0/1:100,82:33:182:0.451:2	0/1:97,79:34:176:0.449:2	0/1:1,170:33:171:0.994:2	0/1:91,86:33:177:0.486:2
chr19	55708573	rs2288520	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,10:29:27:0.370:2	./.	0/1:93,80:32:173:0.462:2	0/1:90,95:31:185:0.514:2	./.	0/1:111,77:32:188:0.410:2	./.	./.	./.
chr19	55713514	rs140867659	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:167,11:32:178:0.062:2	./.	0/1:147,4:31:151:0.026:2	./.	./.	./.	0/1:168,14:32:182:0.077:2
chr19	55713535	rs2288515	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:82,60:29:142:0.423:2	0/1:35,29:31:64:0.453:2	./.	./.	0/1:131,68:29:199:0.342:2	0/1:105,89:29:194:0.459:2	0/1:103,79:29:182:0.434:2	0/1:110,81:29:191:0.424:2	./.	0/1:95,99:30:194:0.510:2	0/1:124,68:30:193:0.354:2
chr19	55713614	rs10416122	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,45:28:143:0.315:2	./.	0/1:171,4:32:175:0.023:2	./.	./.	./.	0/1:82,53:29:135:0.393:2
chr19	55713638	rs377115239	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,5:28:156:0.032:2	./.	./.	./.	./.
chr19	55715309	rs45535035	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:35,28:32:63:0.444:2	0/1:19,28:32:47:0.596:2	./.	./.	0/1:51,27:32:78:0.346:2	./.	0/1:64,40:32:104:0.385:2	0/1:59,40:31:99:0.404:2	./.	0/1:51,30:32:81:0.370:2	0/1:47,44:32:91:0.484:2
chr19	55715319	rs9304763	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:35,30:32:65:0.462:2	0/1:20,29:32:49:0.592:2	./.	./.	0/1:52,25:32:77:0.325:2	0/1:48,36:32:84:0.429:2	0/1:59,41:32:100:0.410:2	0/1:57,38:31:95:0.400:2	./.	0/1:50,31:33:81:0.383:2	0/1:49,46:32:95:0.484:2
chr19	55716800	rs2288516	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,6:32:16:0.375:2	0/1:191,6:32:197:0.030:2	0/1:104,92:32:196:0.469:2	0/1:98,91:32:189:0.481:2	0/1:111,83:33:194:0.428:2	./.	0/1:105,85:33:190:0.447:2	0/1:93,94:33:187:0.503:2	0/1:1,189:32:190:0.995:2
chr19	55738634	rs4644955	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,66:28:67:0.985:2	0/1:0,44:29:44:1.00:2	0/1:0,15:31:15:1.00:2	0/1:70,54:29:124:0.435:2	0/1:83,62:29:145:0.428:2	0/1:0,114:29:114:1.00:2	0/1:0,147:30:147:1.00:2	0/1:81,64:29:145:0.441:2	0/1:0,103:29:103:1.00:2	0/1:0,97:28:97:1.00:2	0/1:43,49:28:92:0.533:2
chr19	55738746	rs4374298	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,8:32:8:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	55739605	rs4606850	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:22,20:32:42:0.476:2	0/1:15,8:31:23:0.348:2	0/1:3,3:32:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	55739689	rs10413828	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:19,21:33:40:0.525:2	0/1:11,17:32:28:0.607:2	0/1:6,3:32:9:0.333:2	./.	./.	0/1:22,27:32:50:0.551:2	0/1:0,61:33:61:1.00:2	./.	0/1:30,19:34:49:0.388:2	0/1:0,43:33:43:1.00:2	./.
chr19	55742803	rs200736594	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,9:33:42:0.214:2	./.	./.	./.	./.	./.	./.	./.
chr19	55748317	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:34:173:0.023:2	./.	./.
chr19	55753536	rs7507792	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,37:30:70:0.529:2	./.	./.	./.	./.	./.
chr19	55756980	rs3745920	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,22:32:23:0.957:2	0/1:0,13:31:13:1.00:2	0/1:0,4:32:4:1.00:2	0/1:14,20:31:34:0.588:2	./.	0/1:25,11:30:36:0.306:2	./.	./.	0/1:14,14:32:28:0.500:2	./.	./.
chr19	55776675	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,7:32:191:0.037:2	./.	./.
chr19	55805628	rs142824115	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,32:28:81:0.395:2	./.	./.	./.	./.	./.
chr19	55815159	rs17851415	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,38:30:80:0.475:2	./.	./.	./.	./.	./.	0/1:19,27:29:46:0.587:2
chr19	55816678	rs1172821	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,38:29:77:0.494:2	0/1:1,84:30:85:0.988:2	0/1:0,61:32:61:1.00:2	./.	./.
chr19	55817676	rs12973169	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,28:31:65:0.431:2	./.	./.	./.	./.	./.	./.
chr19	55824332	rs7246479	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,4:28:12:0.333:2	0/1:50,22:29:72:0.306:2	0/1:56,26:29:82:0.317:2	./.	0/1:24,10:27:34:0.294:2	0/1:0,68:28:68:1.00:2	0/1:1,46:30:47:0.979:2	./.	./.
chr19	55856083	rs11084395	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,84:29:85:0.988:2	0/1:0,62:29:63:1.00:2	./.	0/1:0,131:30:131:1.00:2	./.	0/1:74,42:30:116:0.362:2	0/1:82,57:30:139:0.410:2	0/1:1,124:30:125:0.992:2	0/1:4,89:30:94:0.957:2	0/1:1,101:30:103:0.990:2	0/1:0,80:30:80:1.00:2
chr19	55865304	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,9:31:18:0.500:2
chr19	55869892	rs28420516	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,23:31:29:0.793:2	0/1:13,10:30:23:0.435:2	./.	./.	./.	./.	./.
chr19	55869903	rs28712579	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,12:30:12:1.00:2	./.	./.	./.	0/1:0,28:31:28:1.00:2	0/1:0,22:30:22:1.00:2	./.	0/1:0,14:27:15:1.00:2	./.	0/1:0,7:27:9:1.00:2	0/1:1,6:31:7:0.857:2
chr19	55870104	rs12974819	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:30:30:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,57:29:57:1.00:2	0/1:0,56:30:56:1.00:2	0/1:1,68:30:69:0.986:2	0/1:0,73:29:74:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,38:29:38:1.00:2	0/1:1,60:29:61:0.984:2
chr19	55870150	rs185501624	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,31:31:65:0.477:2	./.	./.	./.
chr19	55870289	rs12974907	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:31:33:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,41:30:41:1.00:2	0/1:15,14:30:29:0.483:2	0/1:26,17:31:43:0.395:2	0/1:1,26:31:27:0.963:2	0/1:0,42:31:42:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,28:32:28:1.00:2
chr19	55870351	rs12976922	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,34:31:35:0.971:2	0/1:0,21:30:21:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,49:30:49:1.00:2	0/1:24,13:30:37:0.351:2	0/1:33,17:29:50:0.340:2	0/1:1,39:29:40:0.975:2	0/1:0,48:30:48:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,35:30:35:1.00:2
chr19	55870478	rs79366553	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,20:32:63:0.317:2	./.	./.	./.	./.	./.	0/1:27,34:33:61:0.557:2
chr19	55870600	rs12460416	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:33:25:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,30:32:30:1.00:2
chr19	55870835	rs113307911	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,30:28:66:0.455:2	./.	./.	./.	./.	./.	0/1:21,9:29:30:0.300:2
chr19	55871019	rs12609732	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:32:41:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,60:33:60:1.00:2	0/1:1,56:32:57:0.982:2	0/1:0,47:32:47:1.00:2	0/1:0,44:34:44:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,48:33:48:1.00:2
chr19	55872397	rs2124918	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,18:28:18:1.00:2	0/1:0,24:30:24:1.00:2	./.	0/1:0,20:29:20:1.00:2	0/1:0,41:29:41:1.00:2	0/1:1,23:28:24:0.958:2	0/1:0,45:28:45:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,29:29:29:1.00:2	0/1:0,20:28:20:1.00:2	0/1:0,33:28:33:1.00:2
chr19	55872531	rs11084397	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:2,35:30:37:0.946:2	0/1:1,31:28:32:0.969:2	./.	0/1:4,47:30:51:0.922:2	./.	0/1:40,20:30:60:0.333:2	./.	0/1:24,41:28:65:0.631:2	0/1:2,33:29:35:0.943:2	0/1:0,52:30:52:1.00:2	0/1:40,24:28:64:0.375:2
chr19	55872566	rs2124919	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:31:32:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,8:28:8:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,65:29:65:1.00:2	0/1:0,68:29:68:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,53:29:53:1.00:2
chr19	55872591	rs2124920	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,23:32:41:0.561:2	./.	./.	./.	./.	./.	0/1:19,30:31:49:0.612:2
chr19	55873642	rs4252574	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:31:24:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,11:30:11:1.00:2
chr19	55879672	rs4252548	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,14:30:25:0.560:2	0/1:8,4:30:12:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	55879872	rs1126757	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,59:32:60:0.983:2	0/1:0,34:32:34:1.00:2	./.	0/1:2,121:32:123:0.984:2	./.	0/1:49,68:32:117:0.581:2	./.	0/1:76,71:32:147:0.483:2	0/1:0,96:33:96:1.00:2	0/1:0,74:33:74:1.00:2	0/1:39,40:32:79:0.506:2
chr19	55880193	rs375031113	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,16:28:72:0.222:2	./.	./.	./.	./.	./.
chr19	55880271	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:31:82:0.049:2
chr19	55889451	rs77912983	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,41:30:93:0.441:2	./.	./.	./.	./.	./.	0/1:20,18:30:38:0.474:2
chr19	55898025	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:33:158:0.025:2	./.
chr19	55898680	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:31:140:0.029:2	./.	./.	./.	./.
chr19	55899404	rs146377570	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,36:32:71:0.507:2	./.
chr19	55902941	rs45448592	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,66:31:124:0.532:2	./.	./.	./.	./.	./.
chr19	55913035	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,7:33:57:0.123:2	./.	./.
chr19	55913038	rs7608	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,16:33:43:0.372:2	0/1:11,9:32:20:0.450:2	0/1:4,6:32:10:0.600:2	0/1:39,20:30:59:0.339:2	0/1:24,64:29:88:0.727:2	0/1:39,18:29:57:0.316:2	0/1:16,50:30:66:0.758:2	0/1:67,23:31:90:0.256:2	0/1:19,37:31:56:0.661:2	0/1:29,25:30:54:0.463:2	0/1:7,42:32:49:0.857:2
chr19	55915736	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,8:32:193:0.041:2	./.
chr19	55915741	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:169,17:31:186:0.091:2	0/1:168,21:33:191:0.111:2	0/1:164,18:33:182:0.099:2	./.	./.	./.	./.
chr19	55952023	rs78953711	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:30:11:0.364:2
chr19	55953906	.	T	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,5:20:27:0.185:2	./.	./.	0/1:31,13:25:44:0.295:2	0/1:73,36:20:109:0.330:2	0/1:40,20:20:60:0.333:2	0/1:56,29:19:85:0.341:2	0/1:48,21:22:69:0.304:2	0/1:59,15:23:74:0.203:2	0/1:28,12:21:40:0.300:2	0/1:19,9:22:28:0.321:2
chr19	55964720	rs2303089	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,15:32:48:0.313:2
chr19	55992992	rs74442469	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,29:29:40:0.725:2	./.	./.	./.	./.	./.	./.	./.
chr19	55994240	rs12981044	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:29:5:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr19	55994708	rs114775834	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr19	55995272	rs11550705	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,27:32:53:0.509:2	0/1:10,9:31:19:0.474:2	0/1:0,6:32:6:1.00:2	0/1:21,20:32:41:0.488:2	0/1:0,29:31:29:1.00:2	0/1:14,30:32:44:0.682:2	0/1:8,15:31:23:0.652:2	0/1:15,16:32:31:0.516:2	0/1:0,41:32:41:1.00:2	./.	0/1:12,7:30:19:0.368:2
chr19	55995577	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr19	55997907	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.
chr19	55999993	rs4405662	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:28:8:1.00:2	./.	0/1:0,38:29:38:1.00:2	0/1:19,18:29:37:0.486:2	0/1:0,45:28:45:1.00:2	0/1:1,59:29:60:0.983:2	0/1:0,40:29:40:1.00:2	0/1:17,25:29:42:0.595:2	0/1:0,42:28:42:1.00:2
chr19	56000432	rs79231493	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,4:30:15:0.267:2	./.
chr19	56000433	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,9:26:15:0.600:2	./.
chr19	56002329	rs4801305	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,15:32:34:0.441:2	./.
chr19	56009465	rs11672130	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,44:31:86:0.512:2
chr19	56011460	rs4801713	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,18:31:29:0.621:2	0/1:6,4:32:10:0.400:2	0/1:0,2:33:2:1.00:2	0/1:0,31:32:31:1.00:2	0/1:1,44:31:45:0.978:2	0/1:31,12:32:43:0.279:2	0/1:22,20:32:42:0.476:2	0/1:27,15:32:42:0.357:2	0/1:0,28:32:28:1.00:2	./.	0/1:21,16:32:37:0.432:2
chr19	56011915	rs61107130	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,37:29:65:0.569:2	0/1:22,22:31:44:0.500:2	./.	./.	./.	0/1:66,48:28:114:0.421:2	./.	./.	./.	0/1:33,40:30:73:0.548:2	./.
chr19	56024519	rs671542	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:29:36:1.00:2	0/1:0,18:27:18:1.00:2	0/1:0,8:28:8:1.00:2	0/1:0,52:28:52:1.00:2	0/1:0,55:28:55:1.00:2	0/1:0,51:28:51:1.00:2	0/1:0,56:28:56:1.00:2	0/1:0,63:29:63:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,54:29:54:1.00:2	0/1:0,61:28:61:1.00:2
chr19	56028892	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,40:33:72:0.556:2	./.	./.	./.	./.	./.	./.	./.
chr19	56029188	rs77400028	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,57:32:105:0.543:2	./.	./.	0/1:35,29:32:64:0.453:2	./.
chr19	56029191	rs76172483	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,56:30:108:0.519:2	./.	./.	0/1:35,28:31:63:0.444:2	./.
chr19	56029201	rs74585733	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,70:30:130:0.547:2	./.	./.	0/1:43,30:29:73:0.411:2	./.
chr19	56029368	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:33:145:0.028:2	./.	./.	0/1:77,7:31:84:0.083:2	./.
chr19	56029371	rs199879378	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,4:31:146:0.027:2	./.	./.	0/1:75,7:30:82:0.085:2	./.
chr19	56029372	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:31:149:0.027:2	./.	./.	./.	./.
chr19	56029381	.	T	A,C	.	PASS	AC=4,2;AF=0.222,0.111;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9-variant11	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	./.	0/2:26:46:0.111:2	./.	0/2:24:152:0.053:2	./.	./.	0/1:29:160:0.096:2	./.	0/1:31:146:0.028:2	0/1:29:86:0.159:2	0/1:30:125:0.033:2
chr19	56029465	rs4801331	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,66:26:66:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,5:28:5:1.00:2	./.	./.	0/1:0,100:27:104:1.00:2	0/1:0,112:26:112:1.00:2	0/1:1,98:27:104:0.990:2	0/1:0,80:27:81:1.00:2	0/1:0,64:28:64:1.00:2	0/1:0,72:26:76:1.00:2
chr19	56029519	rs111456686	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,17:29:33:0.515:2	./.	./.	0/1:14,12:24:26:0.462:2	./.
chr19	56029523	rs113619253	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,7:24:22:0.318:2	./.	./.	0/1:13,10:22:23:0.435:2	./.
chr19	56029559	rs145888701	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,3:31:14:0.214:2	./.	./.	./.	./.
chr19	56030009	rs925878	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:9,8:30:17:0.471:2	0/1:6,7:32:13:0.538:2	./.	./.	./.	./.	./.	0/1:13,14:32:27:0.519:2	./.	./.	./.
chr19	56042540	rs45520537	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,32:31:49:0.653:2	./.	./.	./.	./.
chr19	56047448	rs310453	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,52:28:52:1.00:2	0/1:0,32:28:32:1.00:2	0/1:11,9:28:20:0.450:2	0/1:0,87:29:87:1.00:2	0/1:0,105:28:105:1.00:2	0/1:0,65:29:65:1.00:2	0/1:0,81:29:81:1.00:2	0/1:4,103:29:107:0.963:2	0/1:36,42:28:78:0.538:2	0/1:0,54:29:54:1.00:2	0/1:0,35:26:35:1.00:2
chr19	56089353	rs2292812	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:14,18:32:32:0.563:2	0/1:11,5:31:16:0.313:2	./.	0/1:25,25:31:50:0.500:2	./.	0/1:34,22:31:56:0.393:2	0/1:40,22:31:62:0.355:2	0/1:40,25:31:65:0.385:2	./.	./.	./.
chr19	56090076	rs34164618	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.
chr19	56114045	rs1077806	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.
chr19	56114237	rs310459	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,21:30:21:1.00:2	0/1:0,16:32:16:1.00:2	./.	0/1:0,25:30:25:1.00:2	0/1:10,7:30:17:0.412:2	0/1:0,21:30:21:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,14:32:14:1.00:2	0/1:10,10:30:20:0.500:2	0/1:4,8:27:12:0.667:2
chr19	56154339	rs12981222	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	56154467	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:164,4:31:168:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr19	56154545	rs11671023	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,52:33:113:0.460:2	./.	./.	./.	./.
chr19	56154718	rs11233	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:62,44:33:107:0.415:2	0/1:34,18:33:52:0.346:2	0/1:6,11:32:17:0.647:2	./.	./.	./.	0/1:111,51:33:162:0.315:2	0/1:69,82:32:151:0.543:2	./.	./.	./.
chr19	56160399	rs7246799	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:32:31:1.00:2	0/1:0,25:33:25:1.00:2	0/1:0,5:28:5:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,49:31:49:1.00:2	0/1:1,55:31:56:0.982:2	0/1:0,63:33:63:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,22:31:22:1.00:2
chr19	56162776	rs2287791	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:31:86:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,109:31:110:1.00:2	0/1:0,157:31:157:1.00:2	0/1:0,134:30:134:1.00:2	0/1:0,103:31:103:1.00:2	0/1:0,124:31:124:1.00:2	0/1:1,103:31:104:0.990:2	0/1:29,49:31:78:0.628:2	0/1:0,77:30:77:1.00:2
chr19	56171880	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,6:21:44:0.136:2	./.	./.	./.	./.	./.
chr19	56180968	rs617073	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:30:103:1.00:2	0/1:0,87:31:87:1.00:2	0/1:0,19:29:19:1.00:2	0/1:0,167:30:167:1.00:2	0/1:0,155:31:155:1.00:2	0/1:0,136:30:136:1.00:2	0/1:2,150:31:152:0.987:2	0/1:84,76:31:160:0.475:2	0/1:1,150:32:151:0.993:2	0/1:102,70:31:172:0.407:2	0/1:0,143:30:143:1.00:2
chr19	56180992	rs149002438	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,57:32:122:0.467:2	./.	./.
chr19	56181019	rs147666260	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,60:30:115:0.522:2	./.	./.	./.	./.	./.	./.	./.
chr19	56189918	rs141127387	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,23:32:28:0.821:2	./.	./.	./.
chr19	56203161	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,26:32:60:0.433:2	./.	./.	./.	./.
chr19	56223314	rs148511077	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,50:32:113:0.446:2	./.	./.	./.	./.	./.	./.
chr19	56241265	rs193384	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:29:53:1.00:2	0/1:0,29:29:29:1.00:2	0/1:0,4:28:4:1.00:2	0/1:0,64:29:64:1.00:2	0/1:1,32:29:33:0.970:2	0/1:0,40:28:40:1.00:2	0/1:2,50:29:52:0.962:2	0/1:0,53:29:53:1.00:2	0/1:0,79:30:79:1.00:2	0/1:1,54:29:55:0.982:2	0/1:1,76:29:77:0.987:2
chr19	56244763	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:33:109:0.037:2	./.	./.
chr19	56244837	rs45597436	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,51:29:116:0.440:2	./.	./.	./.	./.	./.	./.
chr19	56249672	rs56211941	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,24:30:45:0.533:2	0/1:13,13:33:26:0.500:2	./.	./.	./.	0/1:21,25:32:46:0.543:2	./.	./.	0/1:23,31:33:54:0.574:2	./.	./.
chr19	56273285	rs200422093	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:157,32:33:189:0.169:2	0/1:162,35:33:197:0.178:2	./.	0/1:173,22:33:195:0.113:2	0/1:119,68:32:187:0.364:2	./.	0/1:168,26:33:194:0.134:2	./.	./.	./.	./.
chr19	56273293	rs2019946	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:158,37:32:195:0.190:2	0/1:156,32:31:188:0.170:2	./.	0/1:162,22:31:184:0.120:2	0/1:121,75:31:196:0.383:2	./.	0/1:170,27:32:197:0.137:2	./.	./.	./.	./.
chr19	56274065	rs200829886	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,15:28:174:0.086:2
chr19	56274086	rs138079370	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:144,19:25:165:0.117:2	0/1:153,26:28:183:0.145:2	0/1:15,14:29:29:0.483:2	0/1:140,24:28:164:0.146:2	0/1:136,53:26:190:0.280:2	0/1:148,25:26:175:0.145:2	0/1:159,17:23:176:0.097:2	0/1:146,23:26:170:0.136:2	0/1:146,21:27:167:0.126:2	0/1:115,22:27:138:0.161:2	0/1:111,20:26:134:0.153:2
chr19	56274193	rs149361735	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:172,24:31:196:0.122:2	0/1:153,28:32:181:0.155:2	0/1:0,5:34:5:1.00:2	0/1:160,36:33:196:0.184:2	./.	0/1:135,55:31:190:0.289:2	0/1:162,35:32:197:0.178:2	0/1:113,85:32:198:0.429:2	0/1:139,48:32:187:0.257:2	0/1:144,40:32:184:0.217:2	0/1:114,75:32:189:0.397:2
chr19	56274213	rs147035425	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:129,56:31:186:0.303:2	0/1:108,60:32:168:0.357:2	./.	0/1:122,68:31:190:0.358:2	./.	0/1:94,88:31:183:0.484:2	0/1:139,55:31:194:0.284:2	0/1:135,62:31:197:0.315:2	0/1:83,103:32:186:0.554:2	0/1:82,85:31:167:0.509:2	0/1:120,68:32:188:0.362:2
chr19	56274214	rs114470138	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,66:31:196:0.338:2	./.	./.	./.	./.	./.	./.	./.
chr19	56274424	rs150161449	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:122,42:31:164:0.256:2	0/1:74,24:32:98:0.245:2	./.	0/1:130,53:31:183:0.290:2	./.	0/1:116,56:31:172:0.326:2	0/1:101,68:31:169:0.402:2	0/1:130,57:31:187:0.305:2	0/1:127,56:32:183:0.306:2	0/1:122,38:32:160:0.238:2	0/1:137,51:32:188:0.271:2
chr19	56274453	rs75239380	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:123,31:31:154:0.201:2	0/1:75,13:32:90:0.148:2	./.	0/1:129,29:31:158:0.184:2	./.	0/1:95,34:31:129:0.264:2	0/1:104,34:30:138:0.246:2	0/1:143,32:31:175:0.183:2	0/1:132,35:33:167:0.210:2	0/1:120,19:32:139:0.137:2	0/1:147,29:31:176:0.165:2
chr19	56274460	rs200071964	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,6:33:22:0.273:2	./.	./.	0/1:95,27:33:122:0.221:2	./.	./.	0/1:107,51:33:158:0.323:2	0/1:98,33:33:131:0.252:2	./.
chr19	56274506	rs147984855	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:81,6:28:88:0.069:2	0/1:59,4:29:63:0.063:2	./.	0/1:77,7:30:84:0.083:2	0/1:56,6:26:62:0.097:2	0/1:62,5:28:67:0.075:2	0/1:70,4:30:74:0.054:2	0/1:92,4:31:96:0.042:2	0/1:76,5:30:81:0.062:2	0/1:67,7:30:74:0.095:2	0/1:96,4:30:100:0.040:2
chr19	56297019	rs11671248	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,58:31:171:0.339:2	0/1:73,47:32:120:0.392:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	56307583	rs2616940	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,10:32:35:0.286:2	0/1:9,13:31:22:0.591:2	0/1:0,4:32:4:1.00:2	0/1:16,33:31:49:0.673:2	0/1:0,24:30:24:1.00:2	0/1:27,18:31:45:0.400:2	./.	0/1:0,29:30:29:1.00:2	0/1:23,12:32:35:0.343:2	0/1:0,31:31:31:1.00:2	0/1:14,17:32:31:0.548:2
chr19	56320352	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:31:176:0.023:2	./.	./.	./.	./.
chr19	56320663	rs12461110	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,47:32:47:1.00:2	0/1:0,22:32:22:1.00:2	./.	./.	0/1:15,16:32:31:0.516:2	./.	./.	0/1:15,17:31:32:0.531:2	0/1:10,11:34:21:0.524:2	./.	./.
chr19	56321414	rs299163	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,147:31:147:1.00:2	0/1:0,63:32:63:1.00:2	0/1:12,11:31:23:0.478:2	0/1:0,158:32:158:1.00:2	0/1:0,175:31:175:1.00:2	0/1:0,182:31:182:1.00:2	0/1:1,191:32:192:0.995:2	0/1:117,81:31:198:0.409:2	0/1:0,147:32:147:1.00:2	0/1:0,135:32:135:1.00:2	0/1:0,166:31:166:1.00:2
chr19	56321517	rs7249635	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:32:98:0.041:2	./.	./.	0/1:50,42:33:92:0.457:2	./.
chr19	56329334	rs8113630	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,81:32:168:0.482:2
chr19	56369189	rs441827	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:65,39:32:104:0.375:2	0/1:26,19:31:45:0.422:2	0/1:7,4:31:11:0.364:2	./.	0/1:57,32:30:89:0.360:2	./.	./.	0/1:4,100:31:104:0.962:2	0/1:62,50:32:112:0.446:2	0/1:62,37:32:99:0.374:2	./.
chr19	56369215	rs395503	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:76,46:31:122:0.377:2	0/1:27,15:32:42:0.357:2	0/1:7,4:30:11:0.364:2	./.	0/1:57,36:30:93:0.387:2	./.	./.	0/1:3,109:30:113:0.973:2	0/1:81,56:32:137:0.409:2	0/1:57,39:31:96:0.406:2	./.
chr19	56369314	rs16986718	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,43:32:102:0.422:2	0/1:34,19:32:53:0.358:2	./.	./.	./.	./.	./.	./.	0/1:90,63:32:153:0.412:2	./.	0/1:82,81:31:163:0.497:2
chr19	56369572	rs34062458	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,21:32:42:0.500:2	0/1:16,8:32:24:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	56369593	rs421810	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:18,21:33:39:0.538:2	0/1:14,19:32:33:0.576:2	0/1:7,5:34:12:0.417:2	./.	0/1:24,23:32:47:0.489:2	0/1:34,38:32:72:0.528:2	./.	0/1:1,67:32:68:0.985:2	0/1:36,40:33:76:0.526:2	0/1:25,22:32:47:0.468:2	./.
chr19	56370166	rs379327	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,14:31:29:0.483:2	./.	./.	./.	./.	./.	0/1:102,75:33:177:0.424:2	./.	./.
chr19	56373462	rs12462372	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,28:32:100:0.280:2	./.	./.	./.	./.
chr19	56373512	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,43:33:93:0.462:2	./.	./.
chr19	56388407	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:35:189:0.021:2	./.	./.	./.	./.
chr19	56388466	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:33:188:0.021:2
chr19	56390237	rs302453	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,13:32:35:0.371:2	./.	./.	./.	./.	0/1:112,84:32:196:0.429:2	0/1:100,75:33:175:0.429:2	0/1:93,73:33:166:0.440:2	0/1:75,69:32:144:0.479:2
chr19	56392875	rs302456	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	0/1:17,18:32:35:0.514:2	0/1:12,22:33:34:0.647:2	0/1:16,22:32:38:0.579:2	0/1:26,22:33:48:0.458:2
chr19	56392920	rs12975929	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,32:32:66:0.485:2	0/1:16,18:31:34:0.529:2	./.	0/1:26,20:33:46:0.435:2	0/1:37,26:32:63:0.413:2	./.	./.	./.
chr19	56410222	rs302827	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,35:32:55:0.636:2	0/1:21,14:32:35:0.400:2	0/1:4,4:30:8:0.500:2	0/1:34,34:32:68:0.500:2	./.	0/1:1,69:31:70:0.986:2	0/1:32,23:32:55:0.418:2	0/1:36,29:31:65:0.446:2	./.	0/1:17,32:32:49:0.653:2	./.
chr19	56413532	rs7258847	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:32:12:0.583:2	./.	0/1:1,73:30:74:0.986:2	./.	0/1:55,32:31:87:0.368:2	./.	0/1:1,65:33:66:0.985:2	0/1:27,26:30:53:0.491:2	0/1:44,34:31:78:0.436:2
chr19	56416409	rs28506091	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:32:9:0.333:2	./.	./.	./.	./.	0/1:100,81:32:181:0.448:2	0/1:104,72:33:176:0.409:2	./.	./.
chr19	56419263	rs17711239	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,49:32:104:0.471:2	./.	./.	./.	./.	./.	./.	./.
chr19	56423074	rs977070	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,38:30:38:1.00:2	0/1:0,20:29:20:1.00:2	./.	0/1:0,45:30:45:1.00:2	./.	0/1:0,37:28:38:1.00:2	0/1:14,22:29:36:0.611:2	0/1:22,17:28:39:0.436:2	./.	./.	./.
chr19	56423254	rs304002	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,96:32:96:1.00:2	0/1:0,55:31:55:1.00:2	./.	0/1:2,94:32:96:0.979:2	./.	0/1:0,96:31:96:1.00:2	./.	0/1:64,44:32:108:0.407:2	./.	./.	./.
chr19	56423668	rs304001	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,37:32:37:1.00:2	0/1:0,12:32:12:1.00:2	./.	0/1:0,46:32:46:1.00:2	./.	0/1:0,49:31:49:1.00:2	./.	0/1:37,25:32:62:0.403:2	./.	0/1:30,11:31:41:0.268:2	./.
chr19	56423692	rs304000	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,29:31:30:1.00:2	0/1:0,17:32:17:1.00:2	./.	0/1:0,38:31:38:1.00:2	./.	0/1:0,49:31:49:1.00:2	./.	0/1:34,25:32:59:0.424:2	./.	0/1:28,11:31:39:0.282:2	./.
chr19	56423728	rs303999	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,39:31:39:1.00:2	0/1:0,31:32:31:1.00:2	./.	0/1:0,46:33:46:1.00:2	./.	0/1:1,49:32:50:0.980:2	./.	0/1:27,32:31:59:0.542:2	./.	0/1:29,17:33:46:0.370:2	./.
chr19	56423893	rs303998	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,82:33:82:1.00:2	0/1:0,59:32:59:1.00:2	./.	0/1:0,98:33:98:1.00:2	./.	0/1:0,102:32:102:1.00:2	./.	0/1:76,63:33:140:0.453:2	./.	0/1:60,29:34:89:0.326:2	./.
chr19	56424443	rs303997	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,74:30:75:0.987:2	0/1:0,32:29:32:1.00:2	./.	0/1:2,70:29:72:0.972:2	./.	0/1:0,70:30:70:1.00:2	./.	0/1:22,30:29:52:0.577:2	./.	0/1:21,21:29:42:0.500:2	./.
chr19	56424532	rs731338	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,38:31:91:0.418:2	./.
chr19	56459342	rs306507	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,22:32:65:0.338:2	0/1:23,13:32:36:0.361:2	0/1:0,13:32:13:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,70:32:70:1.00:2	./.	0/1:4,74:32:78:0.949:2	0/1:54,52:33:106:0.491:2	./.	0/1:1,69:32:70:0.986:2	0/1:0,100:33:101:1.00:2
chr19	56459458	rs61195059	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,84:31:85:0.988:2	./.	./.	./.	./.	./.	./.	0/1:68,25:31:93:0.269:2
chr19	56459614	rs306506	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,29:33:68:0.426:2	0/1:31,22:33:53:0.415:2	0/1:0,7:34:7:1.00:2	0/1:3,83:33:86:0.965:2	0/1:1,72:32:73:0.986:2	./.	0/1:1,76:33:77:0.987:2	0/1:61,61:33:122:0.500:2	./.	0/1:0,74:33:74:1.00:2	0/1:0,67:33:67:1.00:2
chr19	56466023	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:31:129:0.031:2	./.	./.
chr19	56466124	rs11880691	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,48:31:123:0.390:2	./.	./.	./.	./.
chr19	56466227	rs7259764	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,95:30:95:1.00:2	./.	./.	./.	./.	./.	./.	0/1:49,33:29:82:0.402:2
chr19	56466554	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:34:75:0.053:2	./.	./.	./.	./.
chr19	56467032	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:32:44:0.091:2	./.	./.	./.
chr19	56467281	rs61750024	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,38:31:79:0.481:2	./.	./.	./.	./.	./.	./.	0/1:53,53:31:106:0.500:2
chr19	56467375	rs41481648	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,167:32:167:1.00:2	./.	./.
chr19	56473460	rs6509975	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,9:32:16:0.563:2	0/1:0,127:33:127:1.00:2	./.	0/1:78,73:32:151:0.483:2	./.	0/1:103,96:33:199:0.482:2	./.	./.	0/1:85,63:32:148:0.426:2
chr19	56473493	rs79809983	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,72:32:156:0.462:2	./.	./.	./.	./.	./.	./.	./.
chr19	56477687	rs306497	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,35:32:85:0.412:2	0/1:22,26:32:48:0.542:2	0/1:0,12:33:12:1.00:2	0/1:47,39:33:86:0.453:2	0/1:0,89:32:89:1.00:2	0/1:70,68:32:138:0.493:2	0/1:0,121:33:121:1.00:2	0/1:67,61:32:128:0.477:2	0/1:0,110:33:110:1.00:2	0/1:0,58:33:58:1.00:2	0/1:0,119:33:119:1.00:2
chr19	56477710	rs306496	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,35:26:83:0.427:2	0/1:22,18:27:40:0.450:2	0/1:6,4:28:10:0.400:2	0/1:41,25:27:66:0.379:2	0/1:0,59:27:59:1.00:2	./.	0/1:0,83:28:83:1.00:2	./.	0/1:0,86:28:86:1.00:2	0/1:0,54:27:54:1.00:2	0/1:58,43:27:101:0.426:2
chr19	56485077	rs61740015	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,30:30:62:0.484:2
chr19	56487603	rs306481	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,65:33:137:0.474:2	0/1:38,28:32:66:0.424:2	0/1:7,5:33:12:0.417:2	0/1:64,66:33:130:0.508:2	0/1:0,81:33:81:1.00:2	./.	0/1:41,40:32:81:0.494:2	./.	0/1:0,126:34:126:1.00:2	0/1:1,100:33:101:0.990:2	0/1:0,153:33:153:1.00:2
chr19	56490778	rs306475	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,21:29:21:1.00:2	0/1:98,80:29:178:0.449:2	0/1:0,180:29:180:1.00:2	0/1:81,100:29:182:0.552:2	0/1:2,166:29:168:0.988:2	0/1:92,87:30:179:0.486:2	0/1:0,178:30:178:1.00:2	0/1:1,179:30:180:0.994:2	0/1:92,84:29:176:0.477:2
chr19	56499279	rs306457	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:30:6:1.00:2	0/1:36,26:29:62:0.419:2	0/1:0,11:25:11:1.00:2	0/1:34,29:29:63:0.460:2	0/1:16,16:28:32:0.500:2	0/1:0,52:29:52:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,40:28:40:1.00:2	0/1:0,40:29:40:1.00:2
chr19	56511082	rs35427984	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:32:54:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,70:32:70:1.00:2	0/1:52,39:32:91:0.429:2	0/1:0,83:32:83:1.00:2	0/1:43,45:33:88:0.511:2	0/1:0,74:32:74:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,78:32:78:1.00:2
chr19	56515331	rs35669530	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,50:32:92:0.543:2	0/1:28,26:32:54:0.481:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	56515334	rs1560691	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:33:13:0.462:2	./.	./.	0/1:46,58:31:104:0.558:2	./.	./.	./.	./.	./.
chr19	56520150	rs12460592	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:42,17:34:59:0.288:2	0/1:46,13:33:59:0.220:2	./.	./.	0/1:3,24:32:27:0.889:2	./.	./.	0/1:40,21:31:61:0.344:2	./.	0/1:47,18:33:65:0.277:2	./.
chr19	56538976	rs471979	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,27:33:53:0.519:2	0/1:21,18:31:39:0.462:2	./.	./.	./.	0/1:26,21:33:47:0.447:2	./.	./.
chr19	56539240	rs397977	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,12:31:20:0.600:2	0/1:75,79:31:155:0.513:2	0/1:1,147:31:148:0.993:2	./.	./.	./.	0/1:76,79:32:155:0.510:2	0/1:0,126:32:126:1.00:2	./.
chr19	56549510	rs16986899	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,6:27:16:0.375:2	0/1:82,56:28:138:0.406:2	./.	./.	./.	./.	./.	0/1:56,46:29:102:0.451:2	./.
chr19	56549532	rs306447	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,5:31:14:0.357:2	0/1:78,52:32:130:0.400:2	./.	./.	./.	./.	./.	0/1:57,37:32:94:0.394:2	./.
chr19	56552456	rs61732213	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:53,48:31:101:0.475:2	0/1:37,24:31:61:0.393:2	./.	./.	0/1:85,38:30:123:0.309:2	0/1:78,60:30:138:0.435:2	0/1:86,49:30:135:0.363:2	0/1:77,43:29:120:0.358:2	./.	./.	0/1:69,83:31:152:0.546:2
chr19	56565127	rs392801	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:52,49:30:101:0.485:2	0/1:36,17:32:53:0.321:2	./.	./.	0/1:69,57:31:126:0.452:2	./.	0/1:74,88:31:162:0.543:2	./.	0/1:77,44:31:121:0.364:2	./.	./.
chr19	56565154	rs34819797	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,39:29:95:0.411:2	./.	./.	./.	./.	./.	./.	./.
chr19	56565164	rs3103057	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:31:87:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,91:30:91:1.00:2	0/1:0,62:30:62:1.00:2	0/1:1,89:30:90:0.989:2	0/1:0,102:30:102:1.00:2	0/1:0,99:30:99:1.00:2	0/1:0,88:31:88:1.00:2	0/1:0,92:30:92:1.00:2	0/1:1,81:30:82:0.988:2
chr19	56565165	rs377588935	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,19:31:83:0.229:2
chr19	56569629	rs12462795	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,76:33:153:0.497:2	0/1:107,86:32:193:0.446:2	0/1:93,103:32:196:0.526:2	0/1:190,4:35:194:0.021:2	./.	./.	./.	0/1:102,79:32:181:0.436:2
chr19	56572832	rs10409555	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,55:31:138:0.399:2	0/1:44,47:31:91:0.516:2	0/1:68,45:31:113:0.398:2	./.	./.	./.	0/1:1,93:31:94:0.989:2	0/1:56,56:31:112:0.500:2
chr19	56572875	rs36118060	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,37:32:97:0.381:2	0/1:33,23:32:56:0.411:2	0/1:51,37:32:88:0.420:2	./.	./.	./.	./.	0/1:49,47:33:96:0.490:2
chr19	56693620	rs3745833	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	0/1:37,59:31:96:0.615:2	./.	0/1:50,49:32:99:0.495:2	0/1:41,32:34:73:0.438:2	0/1:31,28:33:59:0.475:2	0/1:32,45:32:77:0.584:2
chr19	56694505	rs575756	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,64:30:153:0.421:2	0/1:97,68:31:165:0.412:2	0/1:104,74:31:178:0.416:2	0/1:1,174:32:175:0.994:2	./.	./.
chr19	56702239	rs10425951	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,6:32:111:0.054:2	./.	./.	0/1:182,5:31:188:0.027:2	./.	./.	0/1:191,4:32:195:0.021:2	./.	./.	./.
chr19	56702301	rs370187858	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:34:169:0.024:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	56702306	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,6:33:194:0.031:2	./.	./.	./.
chr19	56702323	rs4801296	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:94,54:32:148:0.365:2	0/1:41,46:32:87:0.529:2	./.	0/1:113,50:32:163:0.307:2	0/1:75,55:32:130:0.423:2	0/1:90,59:31:149:0.396:2	0/1:2,106:32:108:0.981:2	./.	./.	0/1:54,60:32:115:0.526:2	./.
chr19	56703248	rs527025	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,37:31:61:0.607:2	./.	0/1:31,17:31:48:0.354:2	0/1:16,22:32:38:0.579:2	./.	./.
chr19	56704063	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:181,9:31:190:0.047:2	0/1:133,6:31:139:0.043:2	./.	0/1:187,8:31:195:0.041:2	0/1:194,6:30:200:0.030:2	0/1:180,10:31:191:0.053:2	0/1:181,15:32:196:0.077:2	0/1:185,13:32:198:0.066:2	0/1:189,9:32:198:0.045:2	./.	./.
chr19	56704101	rs11084427	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,64:31:197:0.325:2	./.	0/1:145,54:32:199:0.271:2	0/1:151,46:32:197:0.234:2	./.	./.
chr19	56704260	rs61742908	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:99,68:31:167:0.407:2	./.	./.	./.	./.	./.	./.
chr19	56704399	rs61745809	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,12:29:33:0.364:2	./.	./.	./.	./.	./.	./.
chr19	56733352	rs181999776	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,54:31:113:0.478:2	./.	./.	./.	./.
chr19	56733425	rs34187696	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:39,37:31:76:0.487:2	0/1:24,18:31:42:0.429:2	./.	./.	./.	./.	0/1:39,45:31:84:0.536:2	./.	./.	0/1:38,37:31:75:0.493:2	./.
chr19	56733565	rs150978724	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:30:93:0.043:2	./.	./.	./.	./.
chr19	56735015	rs4801692	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,22:30:40:0.550:2	0/1:27,14:31:41:0.341:2	./.	./.	./.
chr19	56736288	rs376633535	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:35:81:0.049:2	./.	./.
chr19	56736291	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:35:81:0.049:2	./.	./.
chr19	56895408	rs116899216	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,62:33:149:0.416:2
chr19	56895496	rs12978696	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,30:33:64:0.469:2	0/1:30,29:32:59:0.492:2	./.	./.	0/1:30,28:32:58:0.483:2	./.	./.	./.
chr19	56935527	rs3810340	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,9:32:22:0.409:2	0/1:7,5:31:12:0.417:2	./.	0/1:12,8:29:20:0.400:2	0/1:0,11:29:11:1.00:2	./.	0/1:0,8:29:8:1.00:2	0/1:10,24:29:34:0.706:2	0/1:0,15:30:15:1.00:2	0/1:7,8:29:15:0.533:2	0/1:0,31:30:31:1.00:2
chr19	56953585	rs3760849	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,36:33:72:0.500:2	0/1:30,23:32:53:0.434:2	./.	0/1:41,37:33:78:0.474:2	0/1:0,71:32:71:1.00:2	0/1:38,32:31:70:0.457:2	0/1:1,87:32:88:0.989:2	0/1:36,41:33:77:0.532:2	0/1:0,89:33:89:1.00:2	0/1:36,36:33:72:0.500:2	0/1:0,111:33:111:1.00:2
chr19	56953863	rs8107758	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,92:30:93:0.989:2	0/1:1,38:29:39:0.974:2	0/1:0,9:30:9:1.00:2	0/1:1,53:29:54:0.981:2	0/1:0,40:29:40:1.00:2	0/1:0,82:30:82:1.00:2	0/1:0,60:29:60:1.00:2	0/1:0,88:29:88:1.00:2	0/1:1,76:30:77:0.987:2	0/1:0,58:29:58:1.00:2	0/1:0,110:31:110:1.00:2
chr19	56953963	rs35914474	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,43:32:90:0.478:2	0/1:37,20:32:57:0.351:2	0/1:0,9:31:9:1.00:2	0/1:52,41:32:93:0.441:2	./.	0/1:41,26:32:68:0.388:2	./.	0/1:51,35:31:86:0.407:2	./.	0/1:47,41:32:88:0.466:2	./.
chr19	56954103	rs7253217	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,7:30:25:0.280:2	0/1:6,3:31:9:0.333:2	0/1:0,2:31:2:1.00:2	0/1:8,9:28:17:0.529:2	./.	./.	./.	./.	./.	0/1:4,5:29:9:0.556:2	./.
chr19	57036012	rs11667052	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:8,5:32:13:0.385:2	./.	./.	0/1:7,6:31:13:0.462:2	./.	./.	./.	./.	./.	./.	0/1:6,3:31:9:0.333:2
chr19	57036436	rs75422502	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,8:15:43:0.186:2	./.	./.	0/1:29,10:11:39:0.256:2	./.	./.	./.	./.
chr19	57036488	rs148793942	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,14:32:61:0.230:2	./.	./.	./.
chr19	57036653	rs3752176	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,27:32:27:1.00:2	0/1:0,37:32:37:1.00:2	./.	0/1:22,22:31:44:0.500:2	./.	./.	0/1:36,8:32:44:0.182:2	./.	0/1:35,30:32:65:0.462:2	0/1:29,15:32:44:0.341:2	0/1:39,34:31:73:0.466:2
chr19	57036678	rs3752177	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:11,13:31:24:0.542:2	0/1:12,28:33:40:0.700:2	./.	./.	./.	./.	0/1:39,13:32:52:0.250:2	./.	0/1:38,34:33:72:0.472:2	0/1:27,21:33:48:0.438:2	./.
chr19	57036725	rs117330176	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,8:28:41:0.195:2	./.	0/1:27,30:30:57:0.526:2	0/1:15,21:30:37:0.583:2	./.
chr19	57037103	rs16987303	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:21,11:34:32:0.344:2	0/1:18,9:32:27:0.333:2	./.	0/1:15,13:33:28:0.464:2	./.	./.	./.	./.	./.	./.	0/1:14,14:33:28:0.500:2
chr19	57050515	rs7258088	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:30:10:0.300:2	0/1:8,4:30:12:0.333:2	0/1:0,16:32:16:1.00:2	0/1:2,6:32:8:0.750:2	./.	./.
chr19	57058998	rs34136271	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:36,37:32:73:0.507:2	0/1:19,18:30:37:0.486:2	./.	./.	./.	./.	0/1:49,29:32:78:0.372:2	./.	0/1:53,34:33:87:0.391:2	0/1:43,30:32:73:0.411:2	./.
chr19	57065189	rs145011	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:30:9:0.667:2	./.	0/1:28,25:30:53:0.472:2	./.	./.	./.	./.	./.	0/1:59,60:29:119:0.504:2
chr19	57065345	rs145231131	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,4:33:13:0.308:2	./.
chr19	57066013	rs10409531	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,24:33:66:0.364:2	0/1:25,12:31:37:0.324:2	0/1:3,7:31:10:0.700:2	0/1:48,27:31:75:0.360:2	0/1:29,33:32:62:0.532:2	0/1:0,79:31:79:1.00:2	./.	0/1:44,24:31:68:0.353:2	./.	0/1:32,39:32:71:0.549:2	0/1:41,38:32:79:0.481:2
chr19	57085769	rs10421285	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:68,53:32:121:0.438:2	0/1:46,30:32:76:0.395:2	0/1:11,9:32:20:0.450:2	0/1:74,71:32:145:0.490:2	0/1:56,48:32:104:0.462:2	0/1:1,98:32:99:0.990:2	0/1:84,59:32:143:0.413:2	0/1:80,59:33:139:0.424:2	./.	0/1:89,50:32:139:0.360:2	0/1:94,66:33:160:0.413:2
chr19	57088850	rs3752180	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:27,15:32:42:0.357:2	0/1:14,16:33:30:0.533:2	./.	./.	./.	./.	0/1:9,28:32:37:0.757:2	0/1:31,31:32:62:0.500:2	0/1:0,68:33:68:1.00:2	0/1:19,13:33:32:0.406:2	./.
chr19	57089050	rs4801177	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,26:32:26:1.00:2	0/1:0,18:32:18:1.00:2	./.	0/1:31,26:32:57:0.456:2	0/1:18,12:31:30:0.400:2	0/1:0,40:31:40:1.00:2	0/1:1,29:31:30:0.967:2	0/1:0,32:32:32:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,19:32:19:1.00:2	0/1:23,15:33:38:0.395:2
chr19	57089375	rs4570977	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,23:34:50:0.460:2	0/1:14,14:32:28:0.500:2	./.	0/1:35,25:33:60:0.417:2	0/1:22,12:32:34:0.353:2	0/1:48,32:32:81:0.400:2	./.	./.	./.	./.	0/1:24,27:33:51:0.529:2
chr19	57132968	rs2072501	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:29:2:1.00:2	0/1:17,4:32:21:0.190:2	./.	0/1:10,12:30:22:0.545:2	0/1:14,8:29:22:0.364:2	./.	./.	./.	./.
chr19	57133042	rs186242664	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,9:31:36:0.250:2	./.	./.	./.	./.	./.	./.	./.
chr19	57133084	rs368745207	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,3:34:42:0.071:2	./.	./.	./.
chr19	57133876	rs139192184	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,14:29:41:0.341:2	./.	./.	./.	./.
chr19	57133954	rs144893950	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,19:32:52:0.365:2	./.	./.
chr19	57134257	rs11672542	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:22,21:30:43:0.488:2	0/1:16,11:31:27:0.407:2	0/1:2,4:30:6:0.667:2	./.	./.	./.	./.	0/1:23,19:29:42:0.452:2	0/1:1,40:31:41:0.976:2	./.	0/1:0,32:30:32:1.00:2
chr19	57134339	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:32:83:0.048:2	./.	./.	./.	./.	./.
chr19	57134574	rs1047063	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,28:30:69:0.406:2	0/1:23,22:28:45:0.489:2	./.	./.	./.	0/1:41,45:30:86:0.523:2	./.	./.	./.	./.	./.
chr19	57134588	rs1047065	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,24:31:68:0.353:2	0/1:23,22:33:45:0.489:2	./.	./.	./.	0/1:45,39:31:84:0.464:2	./.	./.	./.	./.	./.
chr19	57134651	rs1047066	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,21:33:56:0.375:2	0/1:14,17:32:31:0.548:2	./.	./.	./.	0/1:27,25:33:52:0.481:2	./.	./.	./.	./.	./.
chr19	57134694	rs1047067	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,11:33:19:0.579:2	0/1:5,12:30:17:0.706:2	./.	./.	./.	0/1:8,13:31:21:0.619:2	./.	./.	./.	./.	./.
chr19	57135023	rs12609941	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,28:29:53:0.528:2	0/1:26,24:30:50:0.480:2	./.	./.	./.	0/1:23,21:29:44:0.477:2	./.
chr19	57135195	rs7260368	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:95,63:33:158:0.399:2	0/1:85,49:32:134:0.366:2	0/1:23,19:32:42:0.452:2	./.	0/1:74,65:33:139:0.468:2	./.	0/1:79,60:33:139:0.432:2	0/1:2,150:33:152:0.987:2	0/1:0,133:34:133:1.00:2	./.	0/1:0,146:33:146:1.00:2
chr19	57135240	rs76311202	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,83:31:147:0.565:2	0/1:43,57:31:100:0.570:2	./.	./.	./.	0/1:114,65:30:179:0.363:2	./.	./.	./.	./.	./.
chr19	57175121	rs115625349	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,46:31:95:0.484:2	./.	./.	./.
chr19	57175453	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,6:29:20:0.300:2	./.	./.	./.	./.	./.
chr19	57175484	rs7250003	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,6:31:19:0.316:2	./.	./.	./.	./.	0/1:15,3:32:18:0.167:2	0/1:1,3:32:4:0.750:2	./.
chr19	57175578	rs12610410	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:32:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	57176096	rs77114013	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:30:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	57176198	rs8108756	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,11:32:17:0.647:2	0/1:13,4:29:17:0.235:2	0/1:5,4:30:9:0.444:2	0/1:12,13:29:25:0.520:2	./.	./.	./.	0/1:19,16:29:35:0.457:2	0/1:19,9:32:28:0.321:2	0/1:10,17:29:27:0.630:2	0/1:15,10:30:25:0.400:2
chr19	57176304	rs12460400	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,16:29:54:0.296:2	0/1:13,13:28:26:0.500:2	0/1:5,3:30:8:0.375:2	0/1:29,24:29:53:0.453:2	./.	./.	./.	0/1:33,19:27:52:0.365:2	0/1:27,15:26:42:0.357:2	0/1:24,32:27:56:0.571:2	0/1:36,20:25:56:0.357:2
chr19	57176482	rs12462469	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,28:31:61:0.459:2	0/1:22,17:32:39:0.436:2	0/1:6,4:32:10:0.400:2	0/1:71,43:31:114:0.377:2	./.	./.	./.	0/1:62,56:31:118:0.475:2	0/1:47,36:32:83:0.434:2	0/1:46,41:31:87:0.471:2	0/1:32,40:32:72:0.556:2
chr19	57286624	rs113812503	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,69:33:191:0.361:2	./.	./.
chr19	57293394	rs2286751	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,21:33:36:0.583:2	0/1:18,14:33:32:0.438:2	./.	0/1:0,56:33:56:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,51:33:51:1.00:2	./.	0/1:0,60:33:60:1.00:2	0/1:22,25:32:47:0.532:2	0/1:0,58:32:58:1.00:2	0/1:0,46:33:46:1.00:2
chr19	57325083	rs34051133	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,55:31:110:0.500:2	./.
chr19	57326788	rs116297129	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,4:32:80:0.050:2	./.	./.	./.	./.	./.	./.
chr19	57327035	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:34:101:0.040:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	57327503	rs33931963	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:106,67:30:173:0.387:2	0/1:53,38:29:91:0.418:2	./.	0/1:1,167:30:168:0.994:2	0/1:56,53:29:109:0.486:2	./.	./.	./.	./.	0/1:65,68:29:133:0.511:2	0/1:105,86:30:191:0.450:2
chr19	57328423	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:32:176:0.023:2	./.
chr19	57335022	rs1860565	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:30:9:0.333:2	./.	./.	0/1:61,67:31:129:0.523:2	./.	./.	0/1:51,48:32:99:0.485:2	./.	0/1:24,35:32:59:0.593:2
chr19	57640396	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:33:103:0.039:2	./.	./.
chr19	57640664	rs35732035	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,26:32:57:0.456:2	./.	./.
chr19	57641146	rs1027392	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,58:33:58:1.00:2	0/1:0,27:32:27:1.00:2	./.	0/1:30,19:33:49:0.388:2	./.	0/1:20,24:32:44:0.545:2	0/1:17,17:33:34:0.500:2	0/1:27,22:31:49:0.449:2	0/1:28,31:34:59:0.525:2	0/1:21,23:32:44:0.523:2	0/1:34,32:34:66:0.485:2
chr19	57642098	rs3764574	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,56:29:58:0.966:2	0/1:1,33:28:34:0.971:2	0/1:2,6:29:8:0.750:2	0/1:43,43:29:87:0.500:2	./.	0/1:36,41:28:77:0.532:2	0/1:44,30:29:74:0.405:2	0/1:34,38:28:72:0.528:2	./.	0/1:24,19:28:43:0.442:2	0/1:41,39:29:80:0.488:2
chr19	57642726	rs185700073	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,11:30:28:0.393:2	./.	./.	./.	./.	./.	./.
chr19	57642782	rs9973206	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,49:32:49:1.00:2	0/1:22,24:30:46:0.522:2	0/1:0,49:31:49:1.00:2	0/1:33,33:32:66:0.500:2	0/1:0,55:32:55:1.00:2	0/1:36,21:33:57:0.368:2	0/1:22,17:32:39:0.436:2	0/1:0,59:32:59:1.00:2
chr19	57643051	rs8103779	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:0,35:33:35:1.00:2	0/1:3,3:32:6:0.500:2	0/1:40,33:33:73:0.452:2	./.	0/1:40,38:32:78:0.487:2	0/1:34,25:33:59:0.424:2	0/1:39,34:32:73:0.466:2	0/1:44,43:33:87:0.494:2	0/1:51,17:32:68:0.250:2	0/1:44,37:34:81:0.457:2
chr19	57643099	rs8103793	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:2,53:32:55:0.964:2	0/1:0,37:31:37:1.00:2	./.	0/1:30,27:31:57:0.474:2	./.	0/1:46,33:29:79:0.418:2	0/1:25,18:32:43:0.419:2	0/1:31,28:31:59:0.475:2	./.	0/1:37,19:30:56:0.339:2	0/1:39,26:31:65:0.400:2
chr19	57646570	rs4801433	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:30:45:1.00:2	0/1:1,50:29:51:0.980:2	0/1:1,5:29:6:0.833:2	0/1:46,26:29:72:0.361:2	./.	0/1:24,15:30:39:0.385:2	0/1:34,14:30:48:0.292:2	0/1:36,26:29:62:0.419:2	./.	0/1:41,34:29:75:0.453:2	0/1:44,38:30:82:0.463:2
chr19	57647015	rs7251328	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,93:30:93:1.00:2	0/1:0,61:29:61:1.00:2	./.	0/1:61,61:30:122:0.500:2	./.	0/1:81,57:29:138:0.413:2	0/1:44,52:30:96:0.542:2	0/1:73,63:29:136:0.463:2	./.	0/1:72,73:30:145:0.503:2	0/1:95,84:29:179:0.469:2
chr19	57647236	rs7252632	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,130:31:130:1.00:2	0/1:1,47:30:48:0.979:2	0/1:3,12:31:15:0.800:2	0/1:77,41:29:118:0.347:2	./.	0/1:59,68:30:128:0.535:2	0/1:48,53:30:101:0.525:2	0/1:64,55:30:119:0.462:2	0/1:66,64:31:130:0.492:2	0/1:43,43:32:86:0.500:2	0/1:80,88:31:168:0.524:2
chr19	57648277	rs4801200	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,143:31:146:0.979:2	0/1:2,117:32:119:0.983:2	0/1:9,7:31:16:0.438:2	0/1:101,94:31:195:0.482:2	./.	0/1:97,93:31:190:0.489:2	0/1:113,86:31:199:0.432:2	0/1:105,91:31:196:0.464:2	./.	0/1:109,87:32:196:0.444:2	0/1:92,96:32:188:0.511:2
chr19	57649900	rs2370134	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,23:32:57:0.404:2	0/1:19,15:32:34:0.441:2	./.	./.	./.	0/1:50,29:31:79:0.367:2	./.	./.	./.	./.	0/1:36,34:31:72:0.486:2
chr19	57649962	rs10407445	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,15:32:43:0.349:2	./.	./.	./.	./.	0/1:29,18:31:48:0.383:2	./.	./.
chr19	57670609	rs143443432	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,10:29:29:0.345:2	./.	./.	./.	./.	./.
chr19	57723007	rs2074858	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,74:33:75:0.987:2	0/1:0,46:33:46:1.00:2	0/1:3,7:33:10:0.700:2	0/1:1,84:33:85:0.988:2	0/1:0,69:32:69:1.00:2	0/1:46,36:32:82:0.439:2	0/1:37,43:33:80:0.538:2	0/1:53,45:32:98:0.459:2	0/1:0,97:33:97:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,77:32:77:1.00:2
chr19	57723013	rs917340	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,77:33:79:0.987:2	0/1:0,43:32:43:1.00:2	0/1:3,6:32:9:0.667:2	0/1:2,83:31:85:0.976:2	0/1:0,67:32:67:1.00:2	0/1:45,36:31:81:0.444:2	0/1:36,41:32:77:0.532:2	0/1:53,43:31:96:0.448:2	0/1:0,92:33:93:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,74:32:74:1.00:2
chr19	57723226	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:33:45:0.089:2	./.
chr19	57724133	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,28:32:74:0.378:2	./.	./.	./.	./.	./.	./.	./.
chr19	57742472	rs11084490	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,38:31:39:0.974:2	0/1:0,12:29:12:1.00:2	./.	0/1:1,27:30:28:0.964:2	0/1:0,20:31:20:1.00:2	0/1:41,16:32:57:0.281:2	0/1:0,22:30:22:1.00:2	0/1:42,13:30:55:0.236:2	0/1:31,13:33:44:0.295:2	0/1:1,26:31:27:0.963:2	0/1:0,30:31:30:1.00:2
chr19	57742489	rs58264281	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,38:28:39:0.974:2	0/1:0,11:29:11:1.00:2	./.	0/1:1,23:29:24:0.958:2	0/1:2,14:28:16:0.875:2	0/1:48,13:29:61:0.213:2	0/1:0,19:28:19:1.00:2	0/1:52,12:30:64:0.188:2	0/1:31,10:29:41:0.244:2	0/1:1,25:29:26:0.962:2	0/1:0,25:29:25:1.00:2
chr19	57746411	rs55658999	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,24:33:67:0.358:2	./.
chr19	57752223	rs140117800	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,10:31:15:0.667:2	./.
chr19	57760018	rs2014572	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,47:33:48:0.979:2	0/1:1,29:32:30:0.967:2	0/1:7,5:31:12:0.417:2	0/1:1,59:32:60:0.983:2	0/1:0,65:32:65:1.00:2	0/1:56,29:32:85:0.341:2	0/1:64,41:32:105:0.390:2	./.	0/1:37,31:34:68:0.456:2	0/1:0,65:32:65:1.00:2	0/1:1,52:33:53:0.981:2
chr19	57760057	rs3746231	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,31:30:32:0.969:2	0/1:0,25:31:25:1.00:2	0/1:3,5:30:8:0.625:2	0/1:1,53:29:54:0.981:2	0/1:0,56:30:56:1.00:2	0/1:47,28:30:75:0.373:2	0/1:53,29:30:82:0.354:2	./.	0/1:26,28:31:54:0.519:2	0/1:0,55:31:55:1.00:2	0/1:1,35:31:36:0.972:2
chr19	57764770	rs10421632	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,35:32:38:0.921:2	0/1:0,25:31:25:1.00:2	0/1:3,6:30:9:0.667:2	0/1:0,62:31:62:1.00:2	0/1:0,36:31:36:1.00:2	0/1:42,42:30:84:0.500:2	0/1:31,29:31:60:0.483:2	./.	0/1:32,22:32:54:0.407:2	0/1:1,44:31:45:0.978:2	0/1:1,69:32:70:0.986:2
chr19	57764860	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:28:48:0.083:2	./.	./.	./.
chr19	57765432	rs8100154	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:33:43:1.00:2	0/1:0,21:31:21:1.00:2	0/1:3,3:32:6:0.500:2	0/1:1,36:32:37:0.973:2	0/1:0,43:31:43:1.00:2	0/1:14,16:31:30:0.533:2	0/1:22,20:32:42:0.476:2	./.	0/1:20,25:33:45:0.556:2	0/1:0,51:33:51:1.00:2	0/1:0,40:33:40:1.00:2
chr19	57766301	rs74851517	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,18:31:47:0.383:2	./.	./.	./.
chr19	57766549	rs186659187	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,17:31:34:0.500:2	./.	./.	./.	./.	./.
chr19	57767004	rs10153490	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,7:31:21:0.333:2	0/1:52,41:32:93:0.441:2	0/1:46,35:31:81:0.432:2	0/1:35,51:31:86:0.593:2	0/1:45,31:31:76:0.408:2	./.	0/1:74,41:31:115:0.357:2	0/1:1,60:31:61:0.984:2	0/1:3,120:32:123:0.976:2
chr19	57767129	rs8108730	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,14:32:25:0.560:2	./.	./.	./.
chr19	57768003	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:34:93:0.043:2	./.	./.
chr19	57768066	rs4801452	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,58:33:62:0.951:2	0/1:0,36:33:36:1.00:2	0/1:3,5:32:8:0.625:2	0/1:0,80:33:80:1.00:2	0/1:0,61:31:61:1.00:2	0/1:28,34:32:62:0.548:2	0/1:28,36:32:64:0.563:2	./.	0/1:44,64:33:108:0.593:2	0/1:0,45:32:45:1.00:2	0/1:3,90:32:93:0.968:2
chr19	57768483	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,48:32:96:0.500:2	./.	./.	./.	./.	./.	./.
chr19	57768636	rs76314797	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,35:32:79:0.443:2	./.	0/1:35,25:33:60:0.417:2	./.	0/1:55,43:34:98:0.439:2	./.	0/1:52,66:33:118:0.559:2
chr19	57768809	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:31:167:0.024:2	./.
chr19	57769155	rs10404421	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,14:31:15:0.933:2	0/1:0,6:28:6:1.00:2	./.	0/1:7,5:32:12:0.417:2	0/1:14,12:32:26:0.462:2	./.	./.	0/1:8,7:34:15:0.467:2	./.	./.	./.
chr19	57770237	rs57383056	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,87:32:195:0.446:2	./.	./.	./.
chr19	57770554	rs10412975	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:32:73:1.00:2	0/1:1,37:32:38:0.974:2	0/1:5,6:30:11:0.545:2	0/1:2,51:31:53:0.962:2	0/1:4,41:30:45:0.911:2	0/1:42,37:31:79:0.468:2	0/1:23,26:31:49:0.531:2	0/1:24,25:31:49:0.510:2	0/1:67,39:32:106:0.368:2	0/1:0,68:31:68:1.00:2	0/1:1,110:31:111:0.991:2
chr19	57770905	rs74476750	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,8:29:18:0.444:2	./.	./.	./.
chr19	57770975	rs10420472	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:28:4:1.00:2	0/1:0,5:25:5:1.00:2	0/1:4,3:24:7:0.429:2	0/1:2,3:25:5:0.600:2	./.	./.	0/1:0,3:30:3:1.00:2	0/1:2,5:28:7:0.714:2
chr19	57771266	rs59433719	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,7:28:22:0.318:2	./.	./.	./.
chr19	57771883	rs10413037	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,164:32:164:1.00:2	0/1:2,80:32:82:0.976:2	0/1:10,15:33:25:0.600:2	0/1:1,179:33:180:0.994:2	0/1:2,115:32:117:0.983:2	0/1:75,64:32:139:0.460:2	0/1:85,47:32:132:0.356:2	0/1:94,82:33:176:0.466:2	0/1:84,98:34:182:0.538:2	0/1:2,163:33:165:0.988:2	0/1:8,175:33:183:0.956:2
chr19	57772069	rs10415216	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,165:32:168:0.988:2	0/1:2,102:32:104:0.981:2	./.	0/1:101,90:32:191:0.471:2	0/1:94,70:32:164:0.427:2	./.	./.	0/1:95,90:33:185:0.486:2	./.	./.	./.
chr19	57772232	rs10415639	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,100:32:100:1.00:2	0/1:1,69:32:70:0.986:2	./.	0/1:73,59:32:132:0.447:2	0/1:59,41:31:100:0.410:2	./.	./.	0/1:74,54:32:128:0.422:2	./.	./.	./.
chr19	57773447	rs4224	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,18:32:40:0.450:2	./.	./.	./.	./.
chr19	57774102	rs3746229	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,97:32:99:0.980:2	0/1:0,56:32:56:1.00:2	./.	0/1:72,65:31:137:0.474:2	0/1:42,40:31:82:0.488:2	./.	./.	0/1:69,68:32:137:0.496:2	./.	./.	./.
chr19	57802806	rs2041109	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:22,15:30:37:0.405:2	0/1:17,15:32:32:0.469:2	./.	./.	./.	./.	./.	0/1:35,22:30:57:0.386:2	./.	0/1:21,16:31:37:0.432:2	./.
chr19	57802824	rs2041110	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:30,19:32:49:0.388:2	0/1:26,18:31:44:0.409:2	./.	./.	./.	./.	./.	0/1:52,28:31:80:0.350:2	./.	0/1:38,26:31:64:0.406:2	./.
chr19	57802911	rs36032958	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,61:30:152:0.401:2	./.	./.	./.	./.	./.
chr19	57832214	rs56960413	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:28:6:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	57832257	rs4801462	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,39:30:41:0.951:2	0/1:0,28:30:28:1.00:2	0/1:1,12:26:13:0.923:2	0/1:0,64:30:64:1.00:2	./.	0/1:26,29:29:55:0.527:2	0/1:29,21:30:50:0.420:2	0/1:32,27:30:59:0.458:2	./.	0/1:35,25:30:60:0.417:2	0/1:29,29:29:58:0.500:2
chr19	57838018	rs6510057	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,82:33:82:1.00:2	0/1:2,39:32:41:0.951:2	./.	0/1:3,70:33:73:0.959:2	0/1:41,49:32:90:0.544:2	0/1:57,41:32:99:0.418:2	0/1:0,76:33:76:1.00:2	0/1:2,90:33:92:0.978:2	./.	0/1:45,31:34:76:0.408:2	0/1:50,48:32:98:0.490:2
chr19	57839150	rs8100491	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,79:31:80:0.988:2	0/1:0,30:30:30:1.00:2	0/1:3,3:31:6:0.500:2	0/1:0,91:30:91:1.00:2	0/1:51,43:30:94:0.457:2	0/1:47,34:30:81:0.420:2	0/1:1,77:30:78:0.987:2	0/1:0,106:30:106:1.00:2	./.	0/1:51,16:30:67:0.239:2	0/1:0,82:29:82:1.00:2
chr19	57839567	rs1968090	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,56:31:56:1.00:2	0/1:0,36:31:36:1.00:2	./.	0/1:0,50:31:50:1.00:2	0/1:21,23:30:44:0.523:2	0/1:39,33:31:72:0.458:2	0/1:1,49:31:50:0.980:2	0/1:1,61:31:62:0.984:2	./.	0/1:35,32:31:67:0.478:2	0/1:0,59:31:59:1.00:2
chr19	57839690	rs35238720	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,25:30:61:0.410:2
chr19	57839734	rs375626750	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,6:31:68:0.088:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,5:31:75:0.067:2
chr19	57840547	rs10410649	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,30:31:67:0.448:2	0/1:48,36:32:84:0.429:2	0/1:28,35:32:63:0.556:2	0/1:51,46:32:97:0.474:2	./.	./.	./.
chr19	57865149	rs862704	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,66:32:140:0.471:2	0/1:25,43:32:68:0.632:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,96:31:187:0.513:2
chr19	57867810	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:32:134:0.030:2	./.	./.	./.	./.
chr19	57867916	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,4:31:91:0.044:2	./.	./.	./.	./.	./.	./.
chr19	57868336	rs862709	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:29:33:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,2:27:2:1.00:2	0/1:0,46:30:46:1.00:2	0/1:0,35:29:35:1.00:2	0/1:0,24:28:24:1.00:2	0/1:0,32:29:32:1.00:2	0/1:0,36:29:36:1.00:2	0/1:0,43:30:43:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,36:30:36:1.00:2
chr19	57868879	rs34411126	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,23:33:54:0.426:2	0/1:16,18:33:34:0.529:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,32:33:63:0.508:2
chr19	57889072	rs141614487	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,43:30:88:0.489:2	./.	./.	./.	./.	./.	./.
chr19	57909827	rs17856896	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,28:31:49:0.571:2	0/1:17,18:32:35:0.514:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,40:31:77:0.519:2
chr19	57909872	rs4801478	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,34:31:66:0.515:2	0/1:26,18:32:44:0.409:2	0/1:0,6:30:6:1.00:2	0/1:1,88:31:89:0.989:2	0/1:0,82:30:82:1.00:2	0/1:0,88:31:88:1.00:2	0/1:0,98:31:98:1.00:2	0/1:54,39:31:93:0.419:2	0/1:0,81:32:81:1.00:2	0/1:38,38:31:78:0.500:2	0/1:0,80:31:80:1.00:2
chr19	57911003	rs199946339	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,28:31:56:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr19	57931303	rs2014827	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,30:30:30:1.00:2	0/1:18,9:30:27:0.333:2	./.	0/1:19,24:30:43:0.558:2	./.	./.	./.	0/1:23,20:31:43:0.465:2
chr19	57931553	rs10417533	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,5:32:15:0.333:2	./.	./.	0/1:56,56:32:112:0.500:2	0/1:52,32:32:84:0.381:2	0/1:63,45:33:108:0.417:2	./.	./.	./.
chr19	57932027	rs2158009	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,35:32:37:0.946:2	0/1:10,12:32:22:0.545:2	./.	0/1:7,12:32:19:0.632:2	./.	./.	./.	0/1:16,14:31:30:0.467:2
chr19	57946924	rs56241253	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,13:33:13:1.00:2	./.	0/1:8,6:32:14:0.429:2	./.	./.	./.
chr19	57955244	rs12986235	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,32:30:57:0.561:2	0/1:13,16:30:29:0.552:2	./.	0/1:26,28:30:54:0.519:2	0/1:22,19:29:41:0.463:2	./.	0/1:13,18:30:31:0.581:2	0/1:21,29:29:50:0.580:2	./.	0/1:23,33:31:56:0.589:2	./.
chr19	57955719	rs2240037	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,31:32:85:0.365:2	0/1:31,33:32:64:0.516:2	./.
chr19	57955729	rs2240038	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,30:31:89:0.337:2	0/1:34,32:31:66:0.485:2	./.
chr19	57955971	rs2240039	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,45:31:99:0.455:2	0/1:43,33:31:76:0.434:2	./.
chr19	57956186	rs2240040	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,59:31:106:0.557:2	0/1:45,37:30:82:0.451:2	./.
chr19	57956706	rs61745342	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,32:33:67:0.478:2	0/1:28,24:31:52:0.462:2	./.
chr19	57956828	rs7246856	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:34:4:1.00:2	./.	0/1:13,8:32:21:0.381:2	0/1:0,38:32:38:1.00:2	0/1:18,14:33:32:0.438:2	./.	0/1:29,38:34:67:0.567:2	0/1:1,35:33:36:0.972:2	0/1:24,28:34:52:0.538:2
chr19	57967049	rs61744949	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,26:31:54:0.481:2	./.	0/1:105,93:31:198:0.470:2	./.	./.	./.	0/1:100,97:32:197:0.492:2	./.	0/1:112,85:31:197:0.431:2
chr19	57967133	rs28649880	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,24:32:47:0.511:2	./.	0/1:56,62:31:118:0.525:2	./.	./.	./.	0/1:76,68:32:144:0.472:2	./.	0/1:84,68:31:152:0.447:2
chr19	57984918	rs2074058	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,24:29:46:0.522:2	./.	./.	./.	0/1:30,25:31:55:0.455:2	./.	0/1:28,28:30:56:0.500:2
chr19	57985460	rs2074059	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:81,64:32:145:0.441:2	0/1:58,41:31:100:0.414:2	0/1:12,12:31:24:0.500:2	./.	0/1:1,97:31:98:0.990:2	./.	0/1:64,89:32:153:0.582:2	0/1:84,78:31:162:0.481:2	0/1:0,185:32:185:1.00:2	0/1:0,117:31:117:1.00:2	0/1:69,80:32:149:0.537:2
chr19	57985566	rs2074060	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:56,51:32:107:0.477:2	0/1:36,41:31:77:0.532:2	0/1:2,10:32:12:0.833:2	./.	0/1:1,117:32:118:0.992:2	./.	0/1:59,67:32:126:0.532:2	0/1:53,69:32:122:0.566:2	0/1:0,117:33:117:1.00:2	0/1:0,116:32:116:1.00:2	0/1:83,54:32:137:0.394:2
chr19	57985702	rs149559142	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,7:31:16:0.438:2	./.	./.	./.
chr19	57987147	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,7:18:69:0.101:2
chr19	57999345	rs374429622	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,26:32:46:0.565:2	./.
chr19	58001512	rs11672136	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,21:30:21:1.00:2	./.	0/1:114,79:31:193:0.409:2	./.	./.	./.	0/1:120,73:32:193:0.378:2	./.	0/1:0,184:32:184:1.00:2
chr19	58002859	rs62126198	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:188,8:28:196:0.041:2	./.	./.	./.	./.	./.	./.
chr19	58002964	rs8108040	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:52,44:28:96:0.458:2	0/1:17,31:29:48:0.646:2	./.	./.	0/1:98,36:29:134:0.269:2	./.	0/1:58,48:29:106:0.453:2	0/1:88,47:28:135:0.348:2	0/1:51,67:30:118:0.568:2	0/1:7,107:28:114:0.939:2	./.
chr19	58003488	rs2074070	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,11:29:12:0.917:2	./.	0/1:68,31:28:99:0.313:2	./.	./.	./.	0/1:76,28:29:104:0.269:2	./.	0/1:26,75:27:102:0.743:2
chr19	58003580	rs2074071	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:66,64:32:131:0.492:2	0/1:26,31:32:57:0.544:2	0/1:0,24:32:24:1.00:2	./.	0/1:0,95:31:95:1.00:2	./.	0/1:76,79:32:155:0.510:2	0/1:94,61:32:155:0.394:2	0/1:0,112:33:112:1.00:2	0/1:0,106:32:106:1.00:2	0/1:0,138:31:138:1.00:2
chr19	58004346	rs2074076	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:54,48:33:102:0.471:2	0/1:26,27:32:53:0.509:2	0/1:0,4:31:4:1.00:2	./.	0/1:1,66:32:67:0.985:2	./.	0/1:45,38:32:83:0.458:2	0/1:58,29:32:87:0.333:2	0/1:0,87:33:87:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,112:32:112:1.00:2
chr19	58004471	rs190946068	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,57:31:108:0.528:2	./.	./.	./.	./.	./.	./.	./.
chr19	58004563	rs7259303	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,22:32:61:0.361:2	./.	./.	./.	./.
chr19	58004931	rs2074077	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:35,23:33:58:0.397:2	0/1:15,11:32:26:0.423:2	0/1:0,6:32:6:1.00:2	./.	0/1:0,36:31:36:1.00:2	./.	0/1:19,15:32:34:0.441:2	0/1:36,17:31:54:0.321:2	0/1:0,60:33:60:1.00:2	0/1:0,58:33:58:1.00:2	0/1:0,60:33:60:1.00:2
chr19	58011447	rs138317120	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,5:32:9:0.556:2	./.	./.
chr19	58011510	rs739586	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,19:31:21:0.905:2	./.	./.	./.	./.	./.
chr19	58016153	rs147761244	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,5:31:93:0.054:2	./.	0/1:116,8:30:124:0.065:2	0/1:133,10:30:143:0.070:2	./.	0/1:95,16:31:111:0.144:2	./.
chr19	58016677	rs199730365	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,5:31:15:0.333:2	./.	0/1:97,8:31:105:0.076:2	./.	./.	./.	0/1:94,10:30:104:0.096:2	./.	0/1:87,19:29:106:0.179:2
chr19	58017753	rs61731281	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,36:30:36:1.00:2	0/1:33,10:30:43:0.233:2	./.	./.	./.	./.
chr19	58017754	rs61737910	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,36:31:36:1.00:2	0/1:33,10:29:43:0.233:2	./.	./.	./.	./.
chr19	58017758	rs55823456	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,45:31:45:1.00:2	0/1:33,10:30:43:0.233:2	./.	./.	./.	./.
chr19	58018244	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,3:34:48:0.063:2	./.	./.	./.	./.	./.	./.
chr19	58018253	rs139485854	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,4:32:50:0.080:2	./.	./.	./.	./.	./.	./.
chr19	58018255	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,8:33:93:0.086:2	./.	./.	./.	./.	./.
chr19	58018347	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,4:32:61:0.066:2	./.	./.	0/1:85,13:29:98:0.133:2	./.	0/1:107,6:33:113:0.053:2	0/1:106,6:31:112:0.054:2	0/1:103,10:32:113:0.088:2	0/1:122,6:31:128:0.047:2	0/1:107,11:32:118:0.093:2
chr19	58018497	rs190737852	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,5:29:82:0.061:2	./.	./.	./.
chr19	58018507	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:31:77:0.052:2	./.	./.	./.
chr19	58018618	rs2074064	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,63:33:63:1.00:2	0/1:18,19:34:37:0.514:2	./.	./.	./.	./.
chr19	58024442	rs7253945	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,65:30:65:1.00:2	0/1:38,27:32:65:0.415:2	./.	./.	./.	./.
chr19	58038964	rs12461014	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:30:44:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,71:30:71:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,67:30:67:1.00:2	0/1:0,87:30:87:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,53:30:53:1.00:2
chr19	58049243	rs61735033	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,34:31:65:0.523:2	./.	./.
chr19	58049786	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:32:68:0.059:2	./.
chr19	58058536	rs1548476	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,51:32:102:0.500:2	0/1:21,29:31:50:0.580:2	0/1:0,22:32:22:1.00:2	0/1:62,88:32:150:0.587:2	0/1:63,64:31:127:0.504:2	0/1:0,133:31:133:1.00:2	0/1:62,77:32:139:0.554:2	./.	0/1:78,59:33:137:0.431:2	0/1:0,138:32:138:1.00:2	0/1:0,136:32:136:1.00:2
chr19	58058739	rs10410631	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:32:8:1.00:2	0/1:1,84:31:85:0.988:2	0/1:61,37:31:98:0.378:2	./.	./.	0/1:53,53:31:106:0.500:2	0/1:60,50:32:110:0.455:2	0/1:22,24:31:46:0.522:2	0/1:50,31:32:81:0.383:2
chr19	58084654	rs148782842	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,63:28:131:0.481:2
chr19	58084930	rs3746222	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:54,50:33:105:0.481:2	0/1:39,28:32:67:0.418:2	./.	./.	0/1:91,80:32:171:0.468:2	./.	0/1:94,81:32:175:0.463:2	./.	./.	./.	./.
chr19	58084964	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,39:32:87:0.448:2	0/1:34,23:32:57:0.404:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	58117083	rs9677004	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,31:32:75:0.413:2	0/1:45,18:32:63:0.286:2	./.	./.	0/1:44,38:31:82:0.463:2	0/1:46,26:34:72:0.361:2	./.	./.
chr19	58117223	rs2360543	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,39:33:39:1.00:2	0/1:0,25:32:25:1.00:2	./.	0/1:0,57:32:57:1.00:2	0/1:32,14:31:46:0.304:2	0/1:0,50:31:50:1.00:2	0/1:1,51:32:52:0.981:2	0/1:1,64:32:65:0.985:2	0/1:0,65:33:65:1.00:2	0/1:0,51:32:51:1.00:2	0/1:37,33:33:70:0.471:2
chr19	58117399	rs11883343	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,14:31:33:0.424:2	./.	./.	./.	0/1:18,15:31:33:0.455:2	./.	./.	./.
chr19	58118180	rs143833020	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,17:30:41:0.415:2	./.	./.	./.	./.	./.	./.	./.
chr19	58118418	rs62126240	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,42:31:100:0.420:2
chr19	58131623	rs10413455	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,52:31:91:0.571:2	./.	./.	./.	0/1:40,31:32:71:0.437:2	./.	./.	./.
chr19	58131799	rs200015279	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,20:31:48:0.417:2	./.	./.	./.	./.	./.
chr19	58144715	rs9749449	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:30:8:1.00:2	0/1:3,3:25:6:0.500:2	./.	./.	0/1:9,6:31:15:0.400:2	./.	./.	./.
chr19	58152361	rs3746219	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,81:32:85:0.953:2	0/1:52,41:32:93:0.441:2	./.	./.	0/1:51,54:33:105:0.514:2	0/1:48,33:32:81:0.407:2	./.	./.
chr19	58152795	rs11879465	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,55:32:55:1.00:2	0/1:20,15:31:35:0.429:2	./.	./.	0/1:23,11:30:34:0.324:2	0/1:35,27:32:62:0.435:2	./.	./.
chr19	58152817	rs11880050	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,56:33:56:1.00:2	0/1:25,16:32:41:0.390:2	./.	./.	0/1:28,16:32:44:0.364:2	0/1:35,24:34:59:0.407:2	./.	./.
chr19	58153000	rs3746218	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,40:33:40:1.00:2	0/1:11,17:33:28:0.607:2	./.	./.	0/1:20,11:33:31:0.355:2	0/1:8,10:32:18:0.556:2	./.	./.
chr19	58153009	rs3746217	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,39:31:40:0.975:2	0/1:13,18:30:31:0.581:2	./.	./.	0/1:24,13:32:37:0.351:2	0/1:6,12:30:18:0.667:2	./.	./.
chr19	58153420	rs150396049	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,48:32:82:0.585:2	./.	./.
chr19	58189287	rs9676604	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,33:31:72:0.458:2	./.	./.	0/1:45,25:31:70:0.357:2	./.	./.	./.
chr19	58190130	rs11668570	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,21:31:41:0.512:2
chr19	58198483	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,4:35:77:0.052:2	./.	./.	./.	./.	./.	./.	./.
chr19	58198494	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,4:32:100:0.040:2	./.	./.	./.	./.	./.	./.
chr19	58213213	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:31:62:0.065:2	./.	./.
chr19	58213693	rs61730373	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:89,77:32:166:0.464:2	0/1:76,48:32:124:0.387:2	./.	./.	0/1:85,72:31:157:0.459:2	0/1:81,79:31:160:0.494:2	0/1:80,80:32:160:0.500:2	0/1:93,66:31:159:0.415:2	./.	0/1:80,101:32:181:0.558:2	./.
chr19	58213773	rs2188736	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:97,88:31:185:0.476:2	0/1:58,50:32:109:0.463:2	./.	./.	0/1:76,66:31:142:0.465:2	0/1:96,85:32:181:0.470:2	0/1:98,69:32:167:0.413:2	0/1:103,83:31:186:0.446:2	./.	0/1:87,63:31:151:0.420:2	./.
chr19	58213826	rs61738876	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,92:31:197:0.467:2	./.	0/1:194,4:34:198:0.020:2	./.	./.	./.	./.
chr19	58213952	rs2074078	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,62:30:106:0.585:2	./.	./.	./.	./.	./.	./.	./.
chr19	58213969	rs11878316	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,37:32:80:0.463:2	./.	./.	./.
chr19	58232745	rs34419645	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:33:130:0.031:2	./.	./.
chr19	58233008	rs3746207	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:41,49:31:90:0.544:2	0/1:10,32:31:42:0.762:2	./.	./.	0/1:55,39:30:94:0.415:2	0/1:60,58:30:118:0.492:2	0/1:49,46:30:95:0.484:2	0/1:47,61:30:108:0.565:2	./.	0/1:59,46:30:105:0.438:2	./.
chr19	58258466	rs60751243	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,13:29:29:0.448:2	./.	./.	0/1:37,14:31:51:0.275:2	0/1:21,17:29:38:0.447:2	0/1:14,15:31:29:0.517:2	0/1:29,10:29:39:0.256:2	0/1:21,30:31:51:0.588:2	./.	0/1:28,22:31:50:0.440:2	./.
chr19	58265857	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,5:27:130:0.038:2	./.	./.	./.
chr19	58319760	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:32:87:0.046:2	./.	./.
chr19	58320104	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,9:32:193:0.047:2	./.	./.	./.
chr19	58320161	rs142407853	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,3:32:40:0.075:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	58320191	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,9:30:197:0.046:2	./.	./.	./.	./.	./.	./.	./.
chr19	58320338	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,7:31:42:0.167:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	58320385	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:105,37:31:142:0.261:2	0/1:85,17:30:102:0.167:2	./.	0/1:93,33:31:126:0.262:2	0/1:101,34:31:135:0.252:2	0/1:107,40:31:147:0.272:2	0/1:104,23:32:127:0.181:2	0/1:92,20:31:113:0.179:2	0/1:132,44:32:176:0.250:2	0/1:110,34:31:144:0.236:2	0/1:104,15:31:119:0.126:2
chr19	58361433	rs373843081	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:30:108:0.037:2	./.
chr19	58370298	rs144186084	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:173,25:31:198:0.126:2	./.	0/1:184,11:30:195:0.056:2	./.	0/1:178,15:31:193:0.078:2	./.	./.
chr19	58370430	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,38:31:198:0.192:2	./.	./.	./.	./.	./.
chr19	58370657	rs200055283	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:127,15:33:143:0.106:2	0/1:83,8:32:91:0.088:2	./.	./.	./.	0/1:157,4:31:161:0.025:2	0/1:162,8:32:170:0.047:2	./.	./.	0/1:119,5:32:124:0.040:2	./.
chr19	58370727	rs77825740	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:101,51:30:152:0.336:2	0/1:64,25:29:89:0.281:2	0/1:29,6:30:35:0.171:2	./.	./.	0/1:111,48:29:159:0.302:2	0/1:118,47:29:165:0.285:2	./.	./.	0/1:92,47:29:139:0.338:2	./.
chr19	58370938	rs372561897	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,33:31:189:0.175:2	./.	./.	./.	./.
chr19	58371136	rs10405648	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,67:31:166:0.404:2	./.	./.	./.	0/1:108,58:31:166:0.349:2	./.	0/1:172,4:35:176:0.023:2	./.
chr19	58371259	rs75951435	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:115,34:32:149:0.228:2	./.	0/1:169,18:31:187:0.096:2	./.	0/1:178,11:34:189:0.058:2	./.	./.
chr19	58371274	rs10405892	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:119,37:29:156:0.237:2	./.	0/1:167,22:30:190:0.116:2	./.	0/1:173,20:31:193:0.104:2	./.	./.
chr19	58371368	rs143136357	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:171,4:35:175:0.023:2	./.	./.	0/1:162,8:32:170:0.047:2	./.	./.	0/1:121,4:32:126:0.032:2	0/1:150,5:32:155:0.032:2	0/1:153,10:33:163:0.061:2	./.	./.
chr19	58384399	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,6:34:30:0.200:2	./.
chr19	58384415	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,10:33:37:0.270:2	./.
chr19	58384812	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:33:87:0.047:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	58385546	rs201682072	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:158,11:32:169:0.065:2	0/1:93,8:32:101:0.079:2	0/1:28,3:31:31:0.097:2	0/1:184,6:31:190:0.032:2	0/1:132,6:31:138:0.043:2	0/1:187,7:28:194:0.036:2	0/1:144,10:31:154:0.065:2	0/1:167,10:31:177:0.056:2	0/1:177,13:32:190:0.068:2	0/1:157,11:31:168:0.065:2	0/1:181,7:32:188:0.037:2
chr19	58385714	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:32:134:0.030:2	./.	./.	0/1:163,4:32:167:0.024:2	./.
chr19	58385873	.	T	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:145,9:32:154:0.058:2	0/1:96,11:31:107:0.103:2	./.	./.	0/1:81,7:30:88:0.080:2	0/1:86,13:31:99:0.131:2	0/1:66,7:32:73:0.096:2	./.	./.	0/1:131,4:31:135:0.030:2	./.
chr19	58385906	.	G	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:123,4:32:127:0.031:2	./.	./.	0/1:100,6:32:106:0.057:2	0/1:115,5:32:120:0.042:2	0/1:91,6:34:98:0.062:2	0/1:165,8:32:173:0.046:2	./.	0/1:161,6:34:167:0.036:2	./.
chr19	58385913	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:114,7:32:121:0.058:2	0/1:127,7:32:134:0.052:2	0/1:109,5:33:114:0.044:2	0/1:174,8:32:182:0.044:2	./.	./.	0/1:189,4:34:193:0.021:2
chr19	58385927	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:33:158:0.025:2
chr19	58385954	rs10412929	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:98,68:33:166:0.410:2	0/1:60,41:32:101:0.406:2	0/1:15,11:33:26:0.423:2	./.	0/1:67,44:32:111:0.396:2	0/1:89,68:33:157:0.433:2	0/1:58,53:32:112:0.477:2	0/1:185,5:33:190:0.026:2	./.	0/1:81,66:32:147:0.449:2	./.
chr19	58385987	rs111291730	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:33:177:0.023:2	0/1:98,6:33:104:0.058:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	58385994	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:32:100:0.040:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	58386284	rs201805246	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,25:27:160:0.156:2	0/1:123,4:32:127:0.031:2	./.	./.
chr19	58386314	rs111313171	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:131,61:30:192:0.318:2	./.	./.	./.	./.	./.	./.	./.
chr19	58386461	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,4:32:38:0.105:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	58386508	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:102,40:31:143:0.282:2	0/1:92,21:31:113:0.186:2	./.	0/1:98,25:31:123:0.203:2	0/1:95,27:31:122:0.221:2	0/1:76,28:30:104:0.269:2	0/1:69,19:31:88:0.216:2	0/1:94,22:30:117:0.190:2	0/1:119,27:32:146:0.185:2	0/1:95,30:30:125:0.240:2	0/1:91,16:31:107:0.150:2
chr19	58388294	rs367808493	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,6:33:160:0.038:2	./.
chr19	58420152	rs17845779	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:104,43:29:147:0.293:2	./.	0/1:115,25:29:140:0.179:2	./.	0/1:110,44:31:154:0.286:2	./.	./.
chr19	58420162	rs10416584	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:128,4:32:132:0.030:2	./.	0/1:115,67:33:182:0.368:2	0/1:99,48:31:147:0.327:2	./.	0/1:109,30:32:140:0.216:2	0/1:128,53:32:181:0.293:2	0/1:100,42:33:142:0.296:2	./.	./.
chr19	58420167	rs17852300	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,51:31:146:0.349:2	./.	0/1:109,30:32:139:0.216:2	./.	0/1:104,43:33:147:0.293:2	./.	./.
chr19	58420224	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:180,6:33:187:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr19	58420343	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:32:145:0.028:2	./.
chr19	58420416	rs150518835	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,58:30:173:0.335:2	./.	./.	./.
chr19	58420455	rs149038745	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,21:32:98:0.214:2	./.	./.	./.	./.
chr19	58420660	rs141681057	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:168,17:32:185:0.092:2	0/1:93,9:33:102:0.088:2	0/1:21,3:32:24:0.125:2	./.	./.	0/1:175,13:31:188:0.069:2	0/1:92,15:31:107:0.140:2	./.	./.	0/1:139,11:32:150:0.073:2	./.
chr19	58420682	rs202194085	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:154,23:33:177:0.130:2	0/1:91,14:32:105:0.133:2	0/1:25,7:33:32:0.219:2	./.	./.	0/1:172,20:31:192:0.104:2	0/1:117,30:31:147:0.204:2	./.	./.	0/1:165,23:32:189:0.122:2	./.
chr19	58420699	rs3745133	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,95:32:188:0.505:2	0/1:79,85:32:164:0.518:2	./.	0/1:146,42:32:188:0.223:2	0/1:120,71:32:191:0.372:2	0/1:100,85:33:185:0.459:2	./.	./.
chr19	58420996	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,27:31:194:0.139:2	./.	./.	./.	./.	./.
chr19	58421128	rs201944488	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,146:31:182:0.802:2	./.	0/1:58,128:32:186:0.688:2	./.	0/1:125,69:32:194:0.356:2	./.	./.
chr19	58427751	rs146519620	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,29:30:50:0.580:2	./.	./.	./.	./.	./.	./.
chr19	58438717	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:34:65:0.062:2	./.	./.	./.	./.	./.
chr19	58439186	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,6:32:194:0.031:2	./.	0/1:185,7:33:192:0.036:2	./.	./.	./.	0/1:183,6:34:189:0.032:2	./.
chr19	58439207	rs150200636	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,6:32:194:0.031:2	./.	0/1:183,6:32:189:0.032:2	./.	./.	./.	0/1:184,6:33:190:0.032:2	./.
chr19	58439243	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:186,6:32:192:0.031:2	./.	0/1:178,6:31:184:0.033:2	./.	./.	./.	0/1:180,6:31:186:0.032:2	./.
chr19	58439306	rs7253514	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:77,84:32:161:0.522:2	0/1:54,46:32:100:0.460:2	0/1:14,8:28:22:0.364:2	0/1:76,65:32:141:0.461:2	0/1:60,68:31:128:0.531:2	0/1:62,75:30:137:0.547:2	0/1:64,77:31:141:0.546:2	./.	./.	0/1:59,85:32:144:0.590:2	0/1:82,73:32:156:0.471:2
chr19	58452530	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,24:30:72:0.333:2	./.	./.	./.	./.	./.
chr19	58452574	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:34:67:0.060:2	./.	./.
chr19	58453167	rs140799051	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,23:33:54:0.426:2	./.	./.
chr19	58453342	rs959231	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,40:33:85:0.471:2	./.	0/1:39,26:32:65:0.400:2	./.	0/1:68,51:34:119:0.429:2	./.	./.
chr19	58455381	rs257652	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:31:72:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,107:30:107:1.00:2	0/1:0,116:30:116:1.00:2	0/1:0,130:31:130:1.00:2	0/1:0,119:31:119:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,91:30:91:1.00:2	0/1:0,90:30:90:1.00:2
chr19	58490929	rs75971696	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,18:33:34:0.529:2	./.	./.	./.	0/1:9,21:33:30:0.700:2	./.	./.	./.
chr19	58491627	rs11673029	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:31,22:33:53:0.415:2	0/1:15,12:32:27:0.444:2	0/1:3,11:33:14:0.786:2	./.	./.	./.	0/1:36,25:33:61:0.410:2	./.	./.	0/1:2,85:33:87:0.977:2	./.
chr19	58512626	rs45628537	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,32:30:32:1.00:2
chr19	58549366	rs159870	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,4:21:6:0.800:2	./.	./.	./.	./.	./.	./.
chr19	58565233	rs73071865	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,30:31:62:0.484:2	0/1:21,18:31:39:0.462:2	./.
chr19	58572959	rs2288274	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,80:31:195:0.410:2	0/1:0,159:31:160:1.00:2	./.	./.	./.	./.	./.	./.
chr19	58572979	rs1469087	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,6:30:23:0.261:2	0/1:3,176:31:179:0.983:2	0/1:0,162:30:162:1.00:2	0/1:96,80:30:176:0.455:2	0/1:98,62:31:160:0.388:2	0/1:92,75:31:167:0.449:2	0/1:4,168:31:172:0.977:2	0/1:0,159:31:159:1.00:2	0/1:90,81:30:171:0.474:2
chr19	58578578	rs2229375	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,14:31:43:0.326:2	./.	./.	0/1:29,35:32:64:0.547:2	./.	0/1:0,39:33:39:1.00:2	0/1:18,4:31:22:0.182:2	0/1:32,24:32:56:0.429:2
chr19	58578619	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	58579319	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,37:30:65:0.569:2	./.	./.	./.	./.	./.	./.
chr19	58579464	rs73938600	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,16:29:36:0.444:2	./.	./.	./.	./.	./.	./.
chr19	58596109	rs146022713	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.
chr19	58596449	rs2258557	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,8:29:17:0.471:2	./.	0/1:6,16:32:22:0.727:2	./.	./.
chr19	58597611	rs147947490	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,14:32:36:0.389:2	./.	./.	./.	./.	./.	./.
chr19	58600105	.	C	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:30:16:0.375:2	0/1:11,3:28:14:0.214:2	./.	0/1:12,5:29:17:0.294:2	0/1:18,4:30:22:0.182:2	./.	0/1:11,4:31:15:0.267:2	0/1:6,4:29:10:0.400:2
chr19	58718269	rs7256349	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,45:31:46:0.978:2	./.	./.	0/1:24,17:30:42:0.415:2	./.	0/1:20,24:32:44:0.545:2	0/1:1,36:31:37:0.973:2	0/1:0,59:32:59:1.00:2
chr19	58723664	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:32:65:0.062:2	./.	./.	./.	./.	./.
chr19	58757711	rs61732962	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,76:32:164:0.463:2	./.	./.	./.	./.	./.	./.
chr19	58773701	rs193193864	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,31:32:55:0.564:2	./.	./.	./.	./.	./.	./.	./.
chr19	58774071	rs260462	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,29:31:48:0.604:2	0/1:20,10:30:30:0.333:2	0/1:4,5:28:9:0.556:2	0/1:0,46:30:46:1.00:2	0/1:26,31:29:57:0.544:2	0/1:0,45:28:45:1.00:2	0/1:17,10:28:27:0.370:2	0/1:48,22:29:70:0.314:2	0/1:27,19:29:46:0.413:2	0/1:0,49:30:49:1.00:2	0/1:0,56:29:56:1.00:2
chr19	58805783	rs3745137	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,33:32:61:0.541:2	./.	./.
chr19	58806083	rs260471	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,79:30:79:1.00:2	0/1:0,49:29:49:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	58806088	rs373818346	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:32:137:0.029:2	./.	./.	./.
chr19	58850357	rs138944686	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,10:32:33:0.303:2	0/1:13,10:32:23:0.435:2	./.	./.
chr19	58862835	rs200592383	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,11:21:42:0.262:2	./.	./.	0/1:46,21:16:67:0.313:2	0/1:91,34:12:125:0.272:2	0/1:66,18:20:84:0.214:2	0/1:81,32:14:113:0.283:2	0/1:52,23:14:75:0.307:2	0/1:54,12:14:66:0.182:2	0/1:42,14:15:57:0.250:2	0/1:32,13:15:45:0.289:2
chr19	58864479	rs893184	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:29:66:1.00:2	0/1:0,55:29:55:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,114:30:114:1.00:2	0/1:0,147:29:147:1.00:2	0/1:0,148:29:148:1.00:2	0/1:1,175:30:176:0.994:2	0/1:1,120:29:121:0.992:2	0/1:0,122:29:122:1.00:2	0/1:0,72:30:72:1.00:2	0/1:0,90:29:90:1.00:2
chr19	58868480	rs12609654	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,89:30:89:1.00:2	0/1:39,43:30:82:0.524:2	0/1:30,57:30:87:0.655:2	0/1:26,26:30:52:0.500:2	0/1:37,30:31:67:0.448:2	0/1:29,42:32:71:0.592:2	0/1:55,5:28:60:0.083:2	0/1:0,31:28:31:1.00:2
chr19	58879965	rs7255489	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.
chr19	58879976	rs7255596	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr19	58880184	rs7256809	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,6:29:13:0.462:2	./.
chr19	58880242	rs7256940	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,3:30:8:0.375:2	./.
chr19	58880569	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.
chr19	58880710	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.
chr19	58904396	rs10853905	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,9:31:17:0.529:2	./.	./.	./.	./.	./.	./.	0/1:53,61:31:114:0.535:2	./.
chr19	58920504	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,6:34:38:0.158:2	./.	./.
chr19	58926948	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.	./.	./.	./.
chr19	58928299	rs11668757	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,45:32:95:0.474:2	./.	0/1:86,42:32:129:0.328:2	0/1:63,32:32:95:0.337:2	./.	./.
chr19	58928302	rs10423138	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,93:33:94:0.989:2	0/1:0,62:32:62:1.00:2	./.	./.	0/1:2,137:32:139:0.986:2	0/1:53,45:32:98:0.459:2	0/1:51,91:33:142:0.641:2	0/1:92,42:32:134:0.313:2	0/1:60,33:33:93:0.355:2	0/1:39,50:33:89:0.562:2	./.
chr19	58928309	rs11668789	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,52:31:102:0.510:2	./.	0/1:92,44:31:136:0.324:2	0/1:60,40:32:100:0.400:2	./.	./.
chr19	58928786	rs7257872	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,79:32:80:0.988:2	0/1:2,38:32:40:0.950:2	./.	./.	0/1:0,63:30:63:1.00:2	./.	0/1:53,34:32:87:0.391:2	./.	./.	0/1:39,31:32:70:0.443:2	./.
chr19	58928877	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:33:80:0.050:2	./.	./.
chr19	58929052	rs3764535	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,76:32:76:1.00:2	0/1:0,50:32:50:1.00:2	./.	./.	0/1:1,121:32:122:0.992:2	0/1:69,53:32:122:0.434:2	0/1:61,64:32:125:0.512:2	0/1:76,56:32:132:0.424:2	0/1:66,50:32:116:0.431:2	0/1:56,48:32:104:0.462:2	./.
chr19	58929136	rs3764534	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,70:32:70:1.00:2	0/1:0,34:33:34:1.00:2	./.	./.	0/1:3,87:32:90:0.967:2	0/1:51,49:31:100:0.490:2	0/1:60,57:32:117:0.487:2	0/1:64,36:33:100:0.360:2	0/1:53,32:33:85:0.376:2	0/1:43,45:33:88:0.511:2	./.
chr19	58945089	rs3764529	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,37:28:73:0.507:2	./.	0/1:37,50:29:87:0.575:2	0/1:52,45:30:97:0.464:2	./.	./.
chr19	58945107	rs373410965	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,38:32:85:0.447:2
chr19	58945508	rs201605379	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,32:32:75:0.427:2	./.	./.
chr19	58945962	rs9941466	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,21:32:21:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,4:32:4:1.00:2	0/1:1,14:31:15:0.933:2	0/1:0,14:30:14:1.00:2	0/1:0,26:31:26:1.00:2	0/1:11,11:31:22:0.500:2	0/1:0,9:30:9:1.00:2	0/1:11,11:31:22:0.500:2	0/1:0,10:32:10:1.00:2	0/1:0,32:32:33:1.00:2
chr19	58946056	rs1465789	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,68:32:68:1.00:2	0/1:2,30:32:32:0.938:2	./.	./.	0/1:0,54:31:54:1.00:2	0/1:40,25:31:65:0.385:2	0/1:18,28:32:46:0.609:2	0/1:24,31:31:55:0.564:2	0/1:26,45:33:71:0.634:2	0/1:27,30:33:57:0.526:2	./.
chr19	58946203	rs1122955	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,44:30:92:0.478:2	./.	0/1:53,48:31:101:0.475:2	0/1:55,45:31:100:0.450:2	./.	./.
chr19	58951123	rs7259841	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,54:32:54:1.00:2	0/1:0,41:31:41:1.00:2	./.	./.	0/1:0,67:31:67:1.00:2	0/1:66,29:31:95:0.305:2	0/1:36,30:31:66:0.455:2	0/1:44,27:31:71:0.380:2	0/1:45,24:34:69:0.348:2	0/1:36,26:32:62:0.419:2	./.
chr19	58966644	rs60037165	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,93:31:93:1.00:2	0/1:0,68:31:68:1.00:2	./.	./.	0/1:55,33:31:88:0.375:2	./.	./.	./.	./.	./.	./.
chr19	58982200	rs200934507	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:111,4:32:115:0.035:2	./.	./.	./.	0/1:89,4:31:93:0.043:2	./.	./.	./.	./.	./.	./.
chr19	58982384	rs10418774	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:31:46:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,36:32:36:1.00:2
chr19	58982447	rs61742224	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,11:31:42:0.262:2	./.	./.	./.	./.	./.	./.
chr19	58983337	rs370445549	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,22:28:23:0.957:2	./.	./.	./.	./.	./.	./.
chr19	58989495	rs893185	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,53:32:53:1.00:2	0/1:0,34:32:34:1.00:2	./.	./.	0/1:1,65:32:66:0.985:2	0/1:29,18:31:47:0.383:2	0/1:80,48:32:128:0.375:2	0/1:47,38:32:85:0.447:2	0/1:40,35:33:75:0.467:2	0/1:0,41:33:41:1.00:2	./.
chr19	58991631	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,7:30:13:0.538:2	./.	./.	./.	./.	./.
chr19	58991638	rs36095067	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,6:29:14:0.429:2	./.	./.	./.	./.	./.
chr19	58991900	rs882610	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,33:30:33:1.00:2	0/1:0,11:30:11:1.00:2	./.	./.	0/1:0,27:29:27:1.00:2	./.	0/1:29,27:30:56:0.482:2	./.	./.	0/1:22,17:30:39:0.436:2	./.
chr19	59010021	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:170,4:32:174:0.023:2	./.	./.	./.	./.	./.	./.
chr19	59012709	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,4:32:30:0.133:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	59021334	rs143272701	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,50:32:110:0.455:2	./.	./.
chr19	59023166	rs34415062	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,12:31:24:0.500:2	0/1:3,8:31:11:0.727:2	0/1:22,10:28:32:0.313:2	./.	./.	./.
chr19	59023174	rs35350976	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,13:28:28:0.464:2	0/1:3,9:28:12:0.750:2	0/1:21,11:27:32:0.344:2	./.	./.	./.
chr19	59028162	rs35430780	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:99,80:33:179:0.447:2	0/1:91,87:32:178:0.489:2	./.	./.	./.	./.	./.
chr19	59059729	rs2305120	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,16:31:41:0.390:2	./.
chr19	59060209	rs180923728	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,63:31:133:0.474:2	./.	./.
chr19	59061357	rs3816328	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,65:31:119:0.546:2	./.	./.
chr19	59067585	rs8105097	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,44:32:78:0.564:2	./.	./.	./.	./.	./.	./.
chr19	59069706	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:29:69:0.058:2	./.	./.	./.
chr19	59073896	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,3:31:16:0.188:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	59074429	rs2228162	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,5:31:7:0.714:2	./.	./.	./.	0/1:6,4:30:10:0.400:2	./.	./.
chr19	59074452	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr19	59074653	rs4756	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,18:30:55:0.327:2	./.	0/1:17,23:31:40:0.575:2	0/1:26,18:31:44:0.409:2	0/1:34,22:30:56:0.393:2	./.	./.
chr19	59074663	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:27:42:0.095:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr19	59082368	rs3752111	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,30:32:54:0.556:2	./.	./.
chr19	59082605	rs3752109	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,34:31:34:1.00:2	0/1:0,17:32:17:1.00:2	./.	./.	0/1:25,30:31:55:0.545:2	./.	0/1:25,20:32:45:0.444:2	./.	./.	0/1:20,10:32:30:0.333:2	./.
chr20	76962	rs6111385	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:29:77:1.00:2	0/1:0,40:29:40:1.00:2	0/1:3,7:27:10:0.700:2	0/1:0,80:29:80:1.00:2	0/1:0,82:28:82:1.00:2	0/1:1,58:29:59:0.983:2	0/1:53,39:30:92:0.424:2	0/1:0,90:29:90:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,58:29:58:1.00:2	0/1:1,87:28:88:0.989:2
chr20	77013	rs45528036	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,17:32:38:0.447:2	./.	./.	./.	./.	./.
chr20	139456	rs12624954	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,42:33:109:0.385:2	0/1:46,22:32:68:0.324:2	./.	./.	./.	0/1:2,108:32:110:0.982:2	0/1:77,40:32:117:0.342:2	0/1:117,56:32:173:0.324:2	0/1:82,86:33:168:0.512:2	0/1:84,30:33:114:0.263:2	0/1:83,60:33:143:0.420:2
chr20	139576	rs16995685	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,41:32:117:0.350:2	0/1:56,38:31:94:0.404:2	./.	./.	./.	0/1:6,122:31:128:0.953:2	0/1:83,47:31:130:0.362:2	0/1:89,57:31:146:0.390:2	0/1:103,75:32:178:0.421:2	0/1:96,58:32:154:0.377:2	0/1:99,65:32:164:0.396:2
chr20	168728	rs4813043	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:96,92:32:188:0.489:2	0/1:93,74:32:167:0.443:2	0/1:1,38:31:39:0.974:2	0/1:1,193:32:194:0.995:2	0/1:98,75:31:173:0.434:2	./.	0/1:97,81:32:180:0.455:2	0/1:108,86:32:194:0.443:2	0/1:104,90:33:194:0.464:2	0/1:100,93:32:193:0.482:2	0/1:103,94:31:197:0.477:2
chr20	210061	rs13045643	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:15,20:31:35:0.571:2	0/1:5,16:30:21:0.762:2	./.	./.	0/1:26,12:29:38:0.316:2	0/1:0,29:30:29:1.00:2	0/1:27,20:30:47:0.426:2	0/1:20,27:30:47:0.574:2	0/1:31,17:31:48:0.354:2	./.	0/1:17,15:31:32:0.469:2
chr20	210264	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:32:112:0.036:2	./.	./.	./.
chr20	239936	rs74420259	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,23:31:46:0.500:2	./.	./.	./.	./.
chr20	239937	rs73570482	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,23:33:46:0.500:2	./.	./.	./.	./.
chr20	256727	rs3827147	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:29:9:1.00:2	./.	0/1:39,30:31:69:0.435:2	0/1:0,78:31:78:1.00:2	0/1:45,34:30:79:0.430:2	./.	./.	0/1:0,68:31:68:1.00:2	0/1:44,28:31:72:0.389:2
chr20	257733	rs2277781	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	0/1:20,18:28:38:0.474:2	0/1:2,42:30:44:0.955:2	0/1:24,23:30:47:0.489:2	./.	0/1:19,16:30:35:0.457:2	0/1:0,32:30:32:1.00:2	0/1:28,20:28:48:0.417:2
chr20	259818	rs6035541	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,15:30:28:0.536:2	0/1:25,16:29:41:0.390:2	0/1:14,9:31:23:0.391:2	0/1:16,18:31:34:0.529:2	./.	./.	./.	./.
chr20	259969	rs7271033	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:27:3:1.00:2	./.	0/1:21,13:27:34:0.382:2	0/1:0,28:27:28:1.00:2	0/1:1,24:26:25:0.960:2	./.	./.	0/1:10,11:27:21:0.524:2	0/1:0,20:25:20:1.00:2
chr20	271225	rs111238388	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,8:30:18:0.444:2	./.	./.	./.	./.	./.
chr20	278515	rs2223665	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	278806	rs1057189	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,15:31:27:0.556:2	0/1:13,12:30:25:0.480:2	./.	./.	0/1:8,14:33:23:0.636:2	./.	./.
chr20	279483	rs1046560	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:32:12:0.417:2	./.	0/1:52,41:32:93:0.441:2	0/1:49,48:31:97:0.495:2	./.	./.	0/1:64,35:32:99:0.354:2	0/1:47,64:31:111:0.577:2	./.
chr20	279774	rs1046561	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,3:32:11:0.273:2	0/1:9,4:31:13:0.308:2	./.	./.	0/1:8,18:31:26:0.692:2	./.	./.
chr20	307627	rs6050030	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,8:29:15:0.533:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	307966	rs139428694	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	308189	rs1047506	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:19,19:32:38:0.500:2	0/1:13,11:31:24:0.458:2	./.	0/1:15,26:31:41:0.634:2	./.	./.	./.	./.	0/1:33,26:33:59:0.441:2	./.	./.
chr20	308193	rs1047507	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:18,19:33:37:0.514:2	0/1:13,10:33:23:0.435:2	./.	0/1:15,27:33:42:0.643:2	./.	./.	./.	./.	0/1:32,24:33:56:0.429:2	./.	./.
chr20	308402	rs35681037	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,14:31:32:0.438:2	./.	./.	./.	./.	0/1:22,19:32:41:0.463:2	./.	./.
chr20	308403	rs45451194	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,14:32:33:0.424:2	./.	./.	./.	./.	0/1:22,19:31:41:0.463:2	./.	./.
chr20	308669	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:161,4:32:165:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr20	308878	rs6050213	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,28:29:54:0.519:2	./.	./.	./.	./.	0/1:24,20:29:44:0.455:2	./.	./.
chr20	308923	rs6050226	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,9:29:20:0.450:2	./.	./.	./.	./.	0/1:6,8:32:14:0.571:2	./.	./.
chr20	309161	rs5839854	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	309348	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:31:71:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	309692	rs6050276	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,6:32:19:0.316:2	0/1:4,9:32:13:0.692:2	./.	./.	./.	0/1:6,7:33:13:0.538:2	./.	./.
chr20	310030	rs13043818	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,22:28:56:0.400:2	./.	./.
chr20	310269	rs6050323	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:31,17:32:48:0.354:2	0/1:8,9:32:17:0.529:2	./.	0/1:22,17:32:40:0.436:2	./.	./.	./.	./.	0/1:25,24:32:49:0.490:2	./.	./.
chr20	310474	rs7345645	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,26:30:56:0.464:2	./.	./.	./.	./.	0/1:37,40:30:77:0.519:2	./.	./.
chr20	310493	rs6050344	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:24,19:33:43:0.442:2	0/1:17,14:32:31:0.452:2	./.	0/1:24,27:33:51:0.529:2	./.	./.	./.	./.	0/1:40,35:33:75:0.467:2	./.	./.
chr20	330408	rs11556643	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,25:31:59:0.424:2	./.	./.	./.	./.	./.	./.
chr20	368905	rs2295490	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,3:29:18:0.167:2	./.	./.	0/1:17,4:28:21:0.190:2	./.	0/1:20,11:30:31:0.355:2	./.	0/1:6,9:30:15:0.600:2
chr20	371972	rs6051637	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,20:30:31:0.645:2	0/1:17,14:28:31:0.452:2	./.	0/1:20,12:29:32:0.375:2	0/1:17,13:28:30:0.433:2	./.	0/1:1,15:29:16:0.938:2	0/1:20,13:28:33:0.394:2	0/1:15,12:29:27:0.444:2	0/1:9,8:32:17:0.471:2	0/1:0,18:29:18:1.00:2
chr20	377226	rs6115830	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,19:30:40:0.475:2	0/1:24,21:32:45:0.467:2	./.	0/1:35,37:32:72:0.514:2	0/1:43,42:32:85:0.494:2	./.	0/1:1,89:32:90:0.989:2	0/1:43,38:31:81:0.469:2	./.	0/1:34,30:31:64:0.469:2	0/1:0,41:31:41:1.00:2
chr20	390646	rs41281892	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,33:33:70:0.471:2	./.	./.
chr20	391170	rs7059	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,12:29:12:1.00:2	0/1:35,41:30:76:0.539:2	0/1:1,46:30:47:0.979:2	./.	0/1:0,47:31:47:1.00:2	0/1:48,40:29:88:0.455:2	0/1:58,54:30:112:0.482:2	0/1:0,61:30:61:1.00:2	0/1:65,43:30:108:0.398:2
chr20	397928	rs6115906	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:32:8:1.00:2	0/1:1,68:32:70:0.986:2	0/1:0,54:31:54:1.00:2	./.	0/1:1,55:31:56:0.982:2	0/1:0,74:31:74:1.00:2	0/1:37,47:33:84:0.560:2	0/1:0,45:32:45:1.00:2	0/1:39,32:30:71:0.451:2
chr20	428553	rs36088178	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,25:32:46:0.543:2	./.	./.	./.	./.	./.	./.
chr20	468185	rs61748900	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:132,9:30:141:0.064:2	0/1:139,4:31:143:0.028:2	0/1:111,4:30:115:0.035:2	0/1:169,11:29:180:0.061:2	0/1:133,14:30:147:0.095:2	0/1:118,6:30:124:0.048:2	./.	0/1:109,5:31:114:0.044:2
chr20	469379	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,4:32:86:0.047:2	./.	./.	./.	./.	./.	./.	./.
chr20	590542	rs2754502	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,7:34:7:1.00:2	0/1:0,8:33:8:1.00:2	./.	0/1:0,13:32:13:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,4:34:4:1.00:2
chr20	590543	rs2665781	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,7:31:7:1.00:2	0/1:0,8:30:8:1.00:2	./.	0/1:0,13:29:13:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,13:28:13:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,4:29:4:1.00:2
chr20	590600	rs113965101	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,17:29:25:0.680:2	./.	./.	./.	./.	./.
chr20	741847	rs910857	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:3,5:31:8:0.625:2	0/1:0,5:31:5:1.00:2	0/1:13,4:31:17:0.235:2	0/1:0,19:30:19:1.00:2	0/1:14,10:33:24:0.417:2	./.	0/1:19,9:31:28:0.321:2	0/1:0,11:33:11:1.00:2	0/1:0,10:30:10:1.00:2	./.
chr20	744415	rs3746804	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,28:32:54:0.519:2	./.	0/1:49,33:32:82:0.402:2	./.	./.	./.	./.	./.
chr20	744450	rs3746805	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,19:31:49:0.388:2	0/1:24,24:32:48:0.500:2	0/1:0,6:30:6:1.00:2	0/1:30,23:31:53:0.434:2	0/1:0,57:31:57:1.00:2	./.	./.	0/1:43,35:31:78:0.449:2	0/1:37,19:32:56:0.339:2	0/1:18,27:32:45:0.600:2	0/1:32,28:30:60:0.467:2
chr20	744570	rs6054605	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,25:31:46:0.543:2	0/1:16,17:32:33:0.515:2	./.	./.	./.	0/1:34,37:32:71:0.521:2	./.	./.	./.	./.	./.
chr20	745963	rs3746807	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,38:32:84:0.452:2	./.	0/1:37,39:32:76:0.513:2	./.	./.	./.	./.	./.
chr20	746098	rs3746808	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,136:31:137:0.993:2	./.	./.	./.	./.	0/1:42,38:32:80:0.475:2	./.
chr20	746197	rs35655964	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,45:33:93:0.484:2	./.	./.	./.	./.	./.	./.	./.
chr20	820203	rs11905405	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,10:31:34:0.294:2	./.	./.	./.
chr20	820450	rs28497036	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,33:31:75:0.440:2	./.	./.	./.
chr20	825648	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,4:31:64:0.063:2	./.	./.	./.	./.	./.	./.
chr20	825678	rs538094	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,16:32:31:0.516:2	0/1:3,14:33:17:0.824:2	0/1:0,6:31:6:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,47:32:47:1.00:2	0/1:41,17:32:58:0.293:2	0/1:0,14:32:14:1.00:2	0/1:0,34:32:34:1.00:2	0/1:19,6:33:25:0.240:2	0/1:0,14:32:14:1.00:2	0/1:17,8:34:25:0.320:2
chr20	826015	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:30:77:0.052:2	./.	./.	./.
chr20	826492	rs2282050	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,38:33:67:0.567:2	0/1:21,18:32:39:0.462:2	0/1:0,6:32:6:1.00:2	0/1:53,35:33:88:0.398:2	0/1:0,63:32:63:1.00:2	./.	0/1:3,62:32:65:0.954:2	./.	./.	0/1:1,52:32:53:0.981:2	0/1:52,39:33:91:0.429:2
chr20	826666	rs1045410	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:38,41:28:79:0.519:2	0/1:27,19:30:46:0.413:2	./.	0/1:52,42:28:95:0.447:2	./.	0/1:0,104:29:104:1.00:2	./.	0/1:2,103:29:105:0.981:2	0/1:0,84:29:84:1.00:2	./.	0/1:43,51:28:94:0.543:2
chr20	826710	rs1045412	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,22:32:61:0.361:2	0/1:10,20:32:30:0.667:2	0/1:0,13:32:13:1.00:2	0/1:35,21:32:56:0.375:2	0/1:0,32:32:32:1.00:2	./.	0/1:0,38:31:38:1.00:2	./.	./.	0/1:1,44:32:45:0.978:2	0/1:31,25:31:56:0.446:2
chr20	854940	rs944110	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,11:33:22:0.500:2	0/1:113,86:33:199:0.432:2	0/1:1,189:32:190:0.995:2	0/1:1,192:33:193:0.995:2	0/1:192,5:33:197:0.025:2	0/1:103,89:32:192:0.464:2	./.	0/1:94,72:33:166:0.434:2	0/1:97,70:33:167:0.419:2
chr20	855000	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:33:159:0.025:2	./.	./.
chr20	860426	rs61737018	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:29:7:0.857:2	./.	0/1:12,30:32:42:0.714:2	0/1:0,31:32:31:1.00:2	./.	./.	./.	0/1:22,15:33:37:0.405:2	./.
chr20	944702	rs41275604	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,18:29:38:0.474:2	./.	./.	./.	./.
chr20	947859	rs201485021	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,15:30:37:0.405:2	./.	./.
chr20	947909	rs6140807	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,26:32:54:0.481:2	./.	./.	./.	./.	./.
chr20	1099421	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,11:29:23:0.478:2
chr20	1099523	rs1803415	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:33:45:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,93:33:93:1.00:2	0/1:98,79:32:177:0.446:2	0/1:0,117:33:117:1.00:2	0/1:0,159:33:159:1.00:2	0/1:0,155:32:155:1.00:2	0/1:0,108:33:109:1.00:2	0/1:0,67:33:67:1.00:2	0/1:35,27:32:62:0.435:2
chr20	1106229	rs187966028	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,24:32:66:0.364:2	./.	./.	./.	./.	./.	./.
chr20	1108122	rs6514113	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:31:11:0.727:2	./.	./.	./.	./.	./.	0/1:0,59:33:61:1.00:2	./.	0/1:54,24:32:78:0.308:2
chr20	1115919	rs2235587	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,9:30:28:0.321:2	./.	./.	./.	./.	./.	0/1:13,16:32:30:0.552:2
chr20	1161589	rs186642678	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,16:31:42:0.381:2	./.	./.	./.	./.	./.	./.
chr20	1187729	rs181425626	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,62:31:115:0.539:2	./.	./.	./.	./.
chr20	1210647	rs450739	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,26:28:54:0.481:2	0/1:10,19:29:29:0.655:2	0/1:4,7:29:11:0.636:2	0/1:35,32:30:67:0.478:2	0/1:13,26:28:39:0.667:2	0/1:29,24:29:53:0.453:2	./.	0/1:2,61:30:63:0.968:2	0/1:42,28:31:70:0.400:2	0/1:33,28:30:61:0.459:2	0/1:0,74:29:74:1.00:2
chr20	1212186	rs77353889	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,48:30:103:0.466:2	./.	./.	./.	./.	./.	./.
chr20	1214814	rs203534	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,51:32:103:0.495:2	0/1:37,24:32:61:0.393:2	0/1:2,9:31:11:0.818:2	0/1:50,55:32:105:0.524:2	0/1:35,30:32:65:0.462:2	0/1:34,38:32:72:0.528:2	./.	0/1:0,76:32:76:1.00:2	0/1:41,52:33:93:0.559:2	0/1:38,42:32:81:0.525:2	0/1:1,117:33:118:0.992:2
chr20	1223321	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:33:143:0.028:2	./.	./.
chr20	1224774	rs17717241	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,22:33:47:0.468:2	0/1:14,23:32:37:0.622:2	./.	./.	./.	0/1:25,27:34:52:0.519:2	0/1:19,23:33:42:0.548:2	./.
chr20	1226941	rs185157509	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,13:32:31:0.419:2	./.	./.	./.	./.	./.	./.
chr20	1285549	rs35467629	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,5:28:14:0.357:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	1285933	rs3795139	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,8:32:24:0.333:2	0/1:18,6:29:24:0.250:2	./.	0/1:11,11:30:22:0.500:2	0/1:22,21:30:43:0.488:2	0/1:28,20:29:48:0.417:2	0/1:8,15:32:23:0.652:2	0/1:26,17:30:43:0.395:2	0/1:16,11:32:27:0.407:2	./.	./.
chr20	1291076	rs1048628	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,9:34:16:0.563:2	0/1:100,94:33:194:0.485:2	0/1:89,109:32:198:0.551:2	0/1:1,174:32:175:0.994:2	0/1:101,70:31:171:0.409:2	0/1:2,191:32:193:0.990:2	./.	0/1:85,75:33:160:0.469:2	0/1:66,44:32:110:0.400:2
chr20	1292989	rs4814111	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,17:32:58:0.293:2	0/1:14,21:31:35:0.600:2	./.	./.	./.	./.	./.
chr20	1293008	rs2273958	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,7:31:8:0.875:2	0/1:0,65:31:65:1.00:2	0/1:46,25:29:71:0.352:2	0/1:0,42:30:42:1.00:2	./.	0/1:0,65:30:65:1.00:2	./.	0/1:23,13:30:36:0.361:2	0/1:23,18:32:41:0.439:2
chr20	1293046	rs1048621	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:27,30:32:57:0.526:2	0/1:12,15:31:27:0.556:2	./.	./.	0/1:38,60:32:98:0.612:2	./.	0/1:53,43:32:96:0.448:2	./.	0/1:40,49:33:89:0.551:2	0/1:23,31:32:54:0.574:2	0/1:34,30:32:64:0.469:2
chr20	1293247	rs2273959	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,50:31:50:1.00:2	0/1:0,44:31:44:1.00:2	0/1:3,4:32:7:0.571:2	./.	0/1:88,69:30:157:0.439:2	./.	0/1:5,145:30:150:0.967:2	./.	0/1:1,113:31:114:0.991:2	0/1:40,35:31:75:0.467:2	0/1:64,38:31:102:0.373:2
chr20	1300289	rs370328535	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,59:31:115:0.513:2	./.	./.	./.
chr20	1426393	rs9575	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,12:32:24:0.500:2	./.	./.	0/1:101,72:31:173:0.416:2	0/1:1,122:31:123:0.992:2	0/1:2,152:31:154:0.987:2	0/1:97,64:32:162:0.398:2	0/1:84,64:31:148:0.432:2	./.
chr20	1436391	rs41310181	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,39:31:76:0.513:2	0/1:18,20:32:38:0.526:2	./.	./.	./.	0/1:53,43:30:96:0.448:2	./.	./.	./.	./.	./.
chr20	1456970	rs41275406	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,21:29:41:0.512:2	0/1:11,15:31:26:0.577:2	./.	./.	0/1:0,52:29:52:1.00:2	0/1:42,34:30:76:0.447:2	0/1:35,27:29:62:0.435:2	./.	./.	./.	./.
chr20	1458033	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:32:122:0.033:2	./.	./.
chr20	1459060	rs6042507	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,18:30:35:0.514:2	0/1:9,16:29:25:0.640:2	0/1:0,6:33:6:1.00:2	0/1:31,21:31:52:0.404:2	0/1:0,35:30:35:1.00:2	0/1:0,58:30:58:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,61:30:61:1.00:2	0/1:0,38:30:38:1.00:2	0/1:28,22:28:50:0.440:2
chr20	1532520	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:33:103:0.039:2	./.	./.	./.	./.
chr20	1532595	rs2249317	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,105:29:106:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,8:28:8:1.00:2	0/1:1,113:30:115:0.991:2	0/1:53,33:29:86:0.384:2	0/1:55,64:29:119:0.538:2	0/1:2,114:30:116:0.983:2	0/1:0,123:29:123:1.00:2	0/1:0,103:30:103:1.00:2	0/1:36,52:30:88:0.591:2	0/1:0,115:29:116:1.00:2
chr20	1538249	rs2250055	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,7:31:10:0.700:2	0/1:59,54:31:113:0.478:2	./.	./.	./.	./.	./.	./.	0/1:27,46:31:73:0.630:2
chr20	1538266	rs11697395	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:26,28:32:54:0.519:2	0/1:26,18:32:44:0.409:2	./.	./.	./.	./.	0/1:80,86:31:166:0.518:2	0/1:73,47:31:120:0.392:2	./.	./.	0/1:49,24:30:73:0.329:2
chr20	1538282	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:30:126:0.032:2	./.	./.	./.
chr20	1546805	rs62623705	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:17,4:33:21:0.190:2	0/1:18,9:32:27:0.333:2	./.	./.	./.	./.	0/1:21,13:33:34:0.382:2	./.	./.	./.	0/1:17,16:31:33:0.485:2
chr20	1546911	rs2243603	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,17:31:19:0.895:2	0/1:0,5:32:5:1.00:2	0/1:0,2:33:2:1.00:2	0/1:1,15:31:16:0.938:2	0/1:8,5:32:13:0.385:2	0/1:10,13:30:23:0.565:2	0/1:0,14:32:14:1.00:2	0/1:11,7:31:18:0.389:2	0/1:0,10:32:10:1.00:2	0/1:19,7:32:27:0.269:2	0/1:0,4:31:4:1.00:2
chr20	1551485	rs2254458	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,36:31:84:0.429:2	0/1:21,27:31:48:0.563:2	0/1:0,12:30:12:1.00:2	0/1:3,98:31:101:0.970:2	0/1:65,65:30:130:0.500:2	0/1:64,43:30:107:0.402:2	0/1:63,60:30:123:0.488:2	0/1:78,40:30:118:0.339:2	0/1:0,88:31:89:1.00:2	0/1:40,48:31:88:0.545:2	0/1:54,52:31:106:0.491:2
chr20	1552430	rs2253427	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,182:32:182:1.00:2	0/1:0,144:32:144:1.00:2	0/1:0,57:32:57:1.00:2	0/1:2,179:32:181:0.989:2	0/1:95,98:33:193:0.508:2	0/1:114,77:32:191:0.403:2	0/1:2,180:32:182:0.989:2	0/1:104,85:32:189:0.450:2	0/1:0,179:33:179:1.00:2	0/1:110,80:33:190:0.421:2	0/1:1,178:32:179:0.994:2
chr20	1552457	rs16995332	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:100,86:31:186:0.462:2	0/1:83,105:31:188:0.559:2	./.	./.	./.	./.	0/1:112,86:31:198:0.434:2	./.	./.	./.	0/1:107,87:32:195:0.448:2
chr20	1552519	rs145431656	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,7:34:183:0.038:2	./.	./.
chr20	1558985	rs200840558	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,25:31:186:0.134:2	./.	0/1:171,24:32:195:0.123:2	0/1:183,14:32:197:0.071:2	0/1:138,5:30:143:0.035:2	0/1:91,15:32:106:0.142:2
chr20	1559067	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,7:31:168:0.042:2	./.	./.	./.
chr20	1559075	rs142943219	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,24:30:193:0.124:2	./.	0/1:171,16:30:187:0.086:2	0/1:181,9:30:190:0.047:2	0/1:181,12:32:193:0.062:2	0/1:160,22:31:182:0.121:2
chr20	1559101	rs41275422	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,17:30:45:0.378:2	./.	./.	./.	./.	./.	0/1:97,96:30:193:0.497:2	./.	./.
chr20	1559116	rs111353945	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,6:31:187:0.032:2	./.	0/1:187,4:32:191:0.021:2	./.	./.	0/1:180,4:33:184:0.022:2
chr20	1559233	rs41275424	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,41:31:92:0.446:2	./.
chr20	1559259	rs2746603	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:30:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	0/1:0,33:31:33:1.00:2
chr20	1584474	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	./.	./.
chr20	1584485	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,3:32:14:0.214:2	./.	./.	./.	./.
chr20	1584528	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,3:32:25:0.120:2	./.	./.	./.	./.
chr20	1584631	rs111782610	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:35:7:0.571:2	./.	./.	./.	0/1:191,4:34:195:0.021:2	0/1:183,5:32:188:0.027:2	0/1:0,4:32:4:1.00:2	./.	./.	./.	0/1:1,4:35:5:0.800:2
chr20	1584639	rs113822123	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:27:7:0.714:2	0/1:0,2:29:2:1.00:2	./.	./.	./.	0/1:186,5:28:191:0.026:2	0/1:0,6:31:6:1.00:2	./.	./.	./.	0/1:2,4:28:6:0.667:2
chr20	1584660	.	T	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,8:30:11:0.727:2	0/1:0,3:30:3:1.00:2	./.	./.	0/1:184,5:29:189:0.026:2	0/1:190,5:31:195:0.026:2	0/1:0,7:29:7:1.00:2	./.	0/1:0,2:36:2:1.00:2	./.	0/1:1,4:26:5:0.800:2
chr20	1585501	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,3:34:18:0.167:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	1585530	rs2317871	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,4:26:25:0.160:2	./.	./.	./.	0/1:10,4:24:14:0.286:2
chr20	1585533	rs2317872	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,4:31:22:0.182:2	./.	./.	./.	./.
chr20	1585540	rs2317873	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,4:26:25:0.167:2	./.	./.	./.	./.
chr20	1585614	rs113053287	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,5:32:74:0.068:2	./.	./.	0/1:95,6:31:101:0.059:2	./.	./.	./.	./.
chr20	1585623	rs111860307	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,5:31:77:0.065:2	./.	./.	0/1:100,4:32:104:0.038:2	./.	./.	./.	./.
chr20	1586501	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,6:32:6:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,7:29:7:1.00:2
chr20	1586580	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,4:31:56:0.071:2	./.	./.	./.	./.	./.	./.	./.
chr20	1586598	rs200716503	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:27,24:31:51:0.471:2	0/1:6,15:32:21:0.714:2	./.	./.	./.	./.	0/1:22,24:31:46:0.522:2	./.	./.	./.	0/1:27,45:32:73:0.625:2
chr20	1592019	rs45482592	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,5:32:104:0.048:2	./.	0/1:130,4:31:134:0.030:2	0/1:0,4:32:4:1.00:2	./.	./.
chr20	1592052	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,15:31:151:0.099:2	./.	0/1:163,8:32:172:0.047:2	0/1:0,9:32:9:1.00:2	0/1:149,10:30:159:0.063:2	0/1:161,8:31:170:0.047:2
chr20	1592086	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:33:179:0.022:2	./.	./.	./.
chr20	1592120	rs1135201	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,13:31:174:0.075:2	./.	./.	0/1:2,9:33:11:0.818:2	0/1:170,5:32:177:0.029:2	0/1:170,8:34:178:0.045:2
chr20	1592139	rs149722469	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,6:31:8:0.750:2	./.	./.
chr20	1592141	rs141518677	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,6:33:8:0.750:2	./.	./.
chr20	1592154	rs200203262	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	./.	./.	./.	./.	./.	./.
chr20	1592175	rs201724217	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,6:33:134:0.045:2	./.
chr20	1592193	rs371465078	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:32:122:0.033:2	./.
chr20	1592215	rs41289057	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,7:33:113:0.062:2	./.	0/1:108,11:32:119:0.092:2	0/1:0,2:35:2:1.00:2	0/1:90,5:34:95:0.053:2	./.
chr20	1592219	rs45497395	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	./.	./.	./.	./.	./.	./.
chr20	1592265	rs45471597	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	0/1:71,23:32:94:0.245:2	./.	0/1:68,16:31:84:0.190:2	0/1:0,5:31:5:1.00:2	0/1:64,5:32:69:0.072:2	0/1:91,10:32:101:0.099:2
chr20	1592284	rs1135196	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	0/1:70,21:30:91:0.231:2	./.	0/1:85,15:31:100:0.150:2	0/1:0,5:29:5:1.00:2	0/1:63,5:31:68:0.074:2	0/1:89,8:30:98:0.082:2
chr20	1592312	rs72484087	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	0/1:84,14:29:98:0.143:2	./.	0/1:98,6:29:104:0.058:2	0/1:0,3:30:3:1.00:2	./.	0/1:90,6:26:96:0.063:2
chr20	1592349	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:32:101:0.040:2	./.	./.	./.	./.	./.
chr20	1600524	rs1535882	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:27,11:32:38:0.289:2	0/1:9,11:32:20:0.550:2	./.	./.	0/1:42,10:32:52:0.192:2	0/1:30,22:32:53:0.423:2	0/1:29,23:32:52:0.442:2	0/1:31,37:32:68:0.544:2	./.	0/1:21,13:32:34:0.382:2	0/1:37,18:32:55:0.327:2
chr20	1610894	rs3746721	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,21:31:48:0.438:2	0/1:46,14:33:60:0.233:2	./.	./.
chr20	1610939	rs3746722	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:21,13:32:34:0.382:2	0/1:13,9:33:22:0.409:2	./.	0/1:27,20:32:47:0.426:2	./.	0/1:0,30:32:30:1.00:2	0/1:0,42:33:42:1.00:2	0/1:25,26:32:51:0.510:2	0/1:33,14:32:47:0.298:2	0/1:28,17:33:45:0.378:2	./.
chr20	1615959	rs9305125	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,28:32:49:0.571:2	0/1:20,15:31:35:0.429:2	0/1:0,9:32:9:1.00:2	0/1:39,39:32:78:0.500:2	./.	0/1:0,65:31:66:1.00:2	0/1:2,74:32:76:0.974:2	0/1:41,33:32:74:0.446:2	0/1:52,31:33:83:0.373:2	0/1:36,26:31:62:0.419:2	0/1:1,60:32:61:0.984:2
chr20	1616137	rs6034239	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:84,99:31:183:0.541:2	0/1:55,42:32:97:0.433:2	0/1:10,16:30:26:0.615:2	0/1:91,83:31:174:0.477:2	./.	0/1:90,89:31:179:0.497:2	0/1:83,71:31:154:0.461:2	0/1:82,94:31:177:0.534:2	0/1:101,76:32:177:0.429:2	./.	./.
chr20	1616206	rs6043409	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:68,74:31:142:0.521:2	0/1:48,35:30:85:0.422:2	0/1:12,8:30:20:0.400:2	0/1:73,84:30:159:0.535:2	./.	0/1:0,147:30:147:1.00:2	0/1:2,106:30:108:0.981:2	0/1:70,84:30:154:0.545:2	0/1:88,78:32:167:0.470:2	0/1:68,91:30:159:0.572:2	./.
chr20	1616892	rs2277760	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,105:29:184:0.571:2	./.	./.	./.	./.	0/1:91,104:29:195:0.533:2	./.	./.
chr20	1617069	rs2277761	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,96:30:182:0.527:2	0/1:102,82:30:184:0.446:2	./.	./.	0/1:89,86:31:175:0.491:2	./.
chr20	1629805	rs62641735	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,93:32:197:0.472:2	./.	./.	./.	./.
chr20	1629906	rs6079967	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:53,89:32:142:0.627:2	0/1:79,70:32:149:0.470:2	0/1:16,19:32:35:0.543:2	./.	./.	0/1:83,80:31:163:0.491:2	0/1:60,72:32:132:0.545:2	0/1:74,68:32:142:0.479:2	./.	0/1:73,91:33:164:0.555:2	0/1:0,168:32:168:1.00:2
chr20	1895794	rs1135192	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:26:9:0.333:2	./.	./.	./.	./.	0/1:2,4:25:6:0.667:2	./.	./.	./.
chr20	1895796	rs143735290	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.	./.	./.	./.	0/1:2,4:28:6:0.667:2	./.	./.	./.
chr20	1895797	rs146490405	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.	./.	./.	./.	0/1:2,4:28:6:0.667:2	./.	./.	./.
chr20	1895889	rs72620874	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,7:31:16:0.438:2	./.	0/1:1,7:32:8:0.875:2	./.	0/1:56,7:30:63:0.111:2	0/1:110,9:32:119:0.076:2
chr20	1895911	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,3:33:11:0.273:2	./.	./.	./.
chr20	1895929	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,3:31:11:0.273:2	./.	./.	./.
chr20	1895930	rs140361473	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:133,5:31:138:0.036:2	0/1:10,6:32:16:0.375:2	./.	./.	./.	./.	./.
chr20	1895941	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:165,5:32:170:0.029:2	0/1:7,6:32:13:0.462:2	./.	./.	./.	./.	./.
chr20	1895984	rs17855615	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:31:162:0.025:2	./.
chr20	1895990	rs17855616	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,7:30:9:0.778:2	./.	0/1:3,3:32:6:0.500:2	./.	0/1:150,7:31:157:0.045:2	0/1:131,7:30:138:0.051:2
chr20	1896052	rs202172737	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.
chr20	1896059	rs115287948	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,43:30:46:0.935:2	./.	0/1:3,20:31:23:0.870:2	0/1:110,15:32:125:0.120:2	0/1:96,22:32:118:0.186:2	0/1:123,8:32:131:0.061:2
chr20	1896060	rs114499682	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,43:30:46:0.935:2	./.	0/1:5,22:29:27:0.815:2	0/1:110,15:30:125:0.120:2	0/1:96,22:29:118:0.186:2	0/1:121,8:29:130:0.062:2
chr20	1896100	rs6136375	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,62:31:64:0.969:2	./.	0/1:3,48:31:51:0.941:2	0/1:75,25:32:100:0.250:2	0/1:70,34:32:104:0.327:2	0/1:88,16:32:104:0.154:2
chr20	1908560	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:127,4:32:131:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr20	1918174	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:34:61:0.066:2	./.	./.	./.	./.
chr20	1961134	rs6045819	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,3:29:9:0.333:2	0/1:53,49:29:102:0.480:2	./.	0/1:61,52:29:113:0.460:2	0/1:68,47:29:115:0.409:2	./.	0/1:48,38:29:86:0.442:2	0/1:43,30:29:73:0.411:2	./.
chr20	2290333	rs214803	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,40:33:84:0.476:2	0/1:24,16:33:40:0.400:2	0/1:0,10:31:10:1.00:2	0/1:1,82:32:83:0.988:2	0/1:0,98:31:98:1.00:2	0/1:43,59:32:102:0.578:2	0/1:0,123:32:123:1.00:2	0/1:3,134:32:137:0.978:2	0/1:0,93:32:93:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,99:32:99:1.00:2
chr20	2290877	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:32:78:0.051:2	./.	./.	./.	./.	./.
chr20	2297790	rs214814	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:31:5:0.800:2	./.	./.	./.	./.	0/1:20,23:31:43:0.535:2	0/1:23,20:32:43:0.465:2	0/1:29,22:30:51:0.431:2	./.
chr20	2321105	rs214830	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,44:29:44:1.00:2	0/1:0,24:30:24:1.00:2	./.	0/1:0,63:30:63:1.00:2	0/1:27,37:29:64:0.578:2	0/1:26,24:32:50:0.480:2	./.	./.	0/1:32,36:32:68:0.529:2	0/1:16,18:30:34:0.529:2	0/1:1,37:30:38:0.974:2
chr20	2375262	rs2076405	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,44:30:44:1.00:2	0/1:0,27:31:27:1.00:2	./.	0/1:0,95:32:95:1.00:2	0/1:0,80:32:80:1.00:2	0/1:1,64:31:65:0.985:2	0/1:0,80:32:80:1.00:2	0/1:0,87:31:87:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,54:33:54:1.00:2	0/1:0,52:31:52:1.00:2
chr20	2377229	rs147494925	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:33:190:0.021:2	./.	./.	./.	./.
chr20	2380323	rs6114033	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,30:28:67:0.448:2	0/1:69,43:28:112:0.384:2	./.	0/1:51,49:29:100:0.490:2	./.	./.	0/1:46,41:29:87:0.471:2	./.
chr20	2384438	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:33:105:0.038:2	./.	./.
chr20	2398017	rs2295077	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,7:31:18:0.389:2	0/1:8,6:31:14:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	2411597	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,8:31:135:0.059:2	./.	./.	./.	./.
chr20	2448303	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:31:154:0.026:2	./.	./.	./.
chr20	2448383	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,51:32:97:0.526:2	./.	./.	./.	./.	./.	./.
chr20	2464984	rs61745440	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,63:33:126:0.500:2	./.	./.	./.	./.
chr20	2539387	rs6050063	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,3:33:9:0.333:2	0/1:0,40:31:40:1.00:2	0/1:0,55:32:55:1.00:2	0/1:25,26:32:51:0.510:2	./.	0/1:27,31:32:58:0.534:2	./.	0/1:0,26:30:26:1.00:2	0/1:0,22:31:22:1.00:2
chr20	2559795	rs34884202	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,20:30:44:0.455:2	./.	./.	./.	./.	./.	./.
chr20	2591232	rs6050576	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,56:31:101:0.554:2	./.	./.	0/1:59,59:31:118:0.500:2	0/1:75,60:30:135:0.444:2	./.	0/1:35,34:31:69:0.493:2	0/1:66,57:30:124:0.463:2
chr20	2593863	rs6515646	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,65:31:144:0.451:2	./.	./.	0/1:88,83:30:172:0.485:2	0/1:97,100:30:197:0.508:2	./.	0/1:52,55:30:107:0.514:2	0/1:61,53:30:114:0.465:2
chr20	2618140	rs6083915	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:31:2:1.00:2	0/1:1,27:33:28:0.964:2	0/1:0,11:31:11:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,21:32:21:1.00:2	0/1:20,14:32:34:0.412:2
chr20	2621998	rs6050798	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:30:5:1.00:2	0/1:13,11:28:24:0.458:2	0/1:0,20:29:20:1.00:2	0/1:0,31:28:31:1.00:2	0/1:0,25:28:25:1.00:2	0/1:16,13:28:29:0.448:2	0/1:0,29:30:29:1.00:2	0/1:15,6:28:21:0.286:2	./.
chr20	2633296	rs6138678	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:28:4:1.00:2	./.	./.	./.	./.	./.
chr20	2633936	rs2073194	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,148:30:148:1.00:2	0/1:0,96:31:96:1.00:2	0/1:15,20:30:35:0.571:2	0/1:101,90:31:191:0.471:2	0/1:1,193:30:194:0.995:2	0/1:0,179:30:179:1.00:2	0/1:0,182:31:182:1.00:2	0/1:0,180:30:181:1.00:2	0/1:0,180:31:181:1.00:2	0/1:119,78:30:197:0.396:2	0/1:2,179:30:182:0.989:2
chr20	2636151	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:32:62:0.065:2	./.	./.	./.
chr20	2637071	rs8958	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,68:32:69:0.986:2	0/1:0,37:32:37:1.00:2	0/1:7,4:31:11:0.364:2	0/1:43,34:32:77:0.442:2	0/1:0,46:31:47:1.00:2	0/1:42,31:31:73:0.425:2	0/1:0,52:31:52:1.00:2	0/1:1,74:32:75:0.987:2	0/1:67,22:33:89:0.247:2	0/1:40,28:31:68:0.412:2	0/1:55,35:31:90:0.389:2
chr20	2637436	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,37:32:74:0.500:2
chr20	2638579	rs6753	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:30:3:1.00:2	0/1:16,8:30:24:0.333:2	./.	0/1:12,9:31:21:0.429:2	./.	0/1:0,15:31:15:1.00:2	0/1:7,18:32:25:0.720:2	0/1:12,8:30:20:0.400:2	./.
chr20	2638882	rs5856	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,6:32:8:0.750:2	0/1:8,11:32:19:0.579:2	./.	0/1:20,13:31:33:0.394:2	./.	0/1:0,10:31:10:1.00:2	0/1:12,6:33:18:0.333:2	0/1:13,3:33:16:0.188:2	./.
chr20	2739583	rs2073125	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,36:31:82:0.439:2	./.	./.	0/1:45,44:32:89:0.494:2	./.	./.	0/1:0,83:31:83:1.00:2	./.
chr20	2774910	rs41297632	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,29:30:46:0.630:2	./.	./.	./.	./.
chr20	2775185	rs144417990	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,16:31:36:0.444:2	0/1:12,5:33:17:0.294:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	2776975	rs41310169	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,42:32:44:0.955:2	./.	./.	./.
chr20	2816821	rs2274669	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:38,39:29:78:0.506:2	0/1:34,18:30:52:0.346:2	./.	0/1:46,46:28:92:0.500:2	./.	0/1:46,38:29:86:0.452:2	./.	0/1:3,100:29:104:0.971:2	./.	0/1:45,52:28:97:0.536:2	./.
chr20	2821400	rs2297046	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,30:29:75:0.400:2	./.	./.	./.	./.	./.	0/1:39,21:31:60:0.350:2	./.
chr20	2840773	rs3818605	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,22:33:42:0.524:2	0/1:12,9:32:21:0.429:2	./.	./.	./.	0/1:21,40:32:61:0.656:2	0/1:41,42:32:83:0.506:2	0/1:1,63:32:64:0.984:2	./.	./.	./.
chr20	2843978	rs373747441	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,39:32:74:0.527:2	./.	./.	./.	./.	./.	./.
chr20	2945759	rs1178027	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:37,14:31:51:0.275:2	0/1:10,12:31:22:0.545:2	./.	./.	./.	./.	./.	./.	./.	0/1:15,11:31:26:0.423:2	./.
chr20	2996497	rs1178016	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,44:31:44:1.00:2	0/1:0,21:31:21:1.00:2	./.	0/1:0,42:31:42:1.00:2	./.	0/1:32,22:29:54:0.407:2	0/1:12,12:31:24:0.500:2	0/1:0,40:30:40:1.00:2	./.	0/1:0,31:30:31:1.00:2	./.
chr20	3025107	rs6051545	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,17:32:44:0.386:2	0/1:12,7:31:19:0.368:2	./.	./.	./.	0/1:35,42:30:77:0.545:2	0/1:35,45:32:80:0.563:2	0/1:3,93:31:96:0.969:2	./.	./.	./.
chr20	3026328	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,3:30:26:0.115:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	3027094	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,4:28:22:0.182:2	./.	./.	./.	./.	./.
chr20	3063762	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	3063777	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	3063778	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	3090848	rs708973	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,8:33:32:0.250:2	0/1:11,7:32:18:0.389:2	./.	./.	./.	./.	./.	./.	0/1:24,11:31:35:0.314:2	./.	0/1:16,25:31:42:0.610:2
chr20	3090942	rs34205880	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,23:30:49:0.469:2	./.	./.	./.	0/1:34,23:29:57:0.404:2	./.	./.	./.
chr20	3102626	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,16:29:43:0.372:2	./.	./.	./.	./.	./.	./.	./.
chr20	3128578	rs41304800	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,53:33:132:0.402:2	./.	./.	./.	0/1:58,50:33:108:0.463:2	./.	./.	./.
chr20	3145123	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:31:84:0.048:2	./.
chr20	3147468	rs17853865	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:30:8:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:37,22:31:59:0.373:2
chr20	3147762	rs6051612	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,15:31:15:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,30:32:30:1.00:2	./.	0/1:0,21:30:22:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,11:31:11:1.00:2
chr20	3171337	rs11591	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:31:6:0.500:2	0/1:15,26:28:41:0.634:2	./.	0/1:21,16:29:37:0.432:2	./.	0/1:18,21:29:39:0.538:2	./.	0/1:12,6:30:18:0.333:2	0/1:5,8:30:14:0.615:2
chr20	3172246	rs2295547	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,14:32:34:0.412:2	0/1:5,10:30:15:0.667:2	./.	./.	0/1:0,42:31:42:1.00:2	0/1:26,25:31:51:0.490:2	0/1:0,52:31:52:1.00:2	./.	0/1:28,27:32:55:0.491:2	0/1:20,28:31:48:0.583:2	./.
chr20	3193893	rs7270101	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,61:33:106:0.575:2	./.	./.	./.	0/1:54,99:33:153:0.647:2	0/1:74,88:33:162:0.543:2	./.	./.
chr20	3193978	rs8362	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:49,61:32:110:0.555:2	0/1:26,27:33:53:0.509:2	./.	./.	./.	./.	0/1:36,26:32:62:0.419:2	./.	0/1:68,59:34:127:0.465:2	0/1:39,33:33:72:0.458:2	./.
chr20	3204032	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,10:31:17:0.588:2	0/1:1,10:31:11:0.909:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	3204084	rs9101	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:15,9:32:24:0.375:2	0/1:2,6:32:8:0.750:2	./.	./.	./.	./.	0/1:28,24:31:52:0.462:2	./.	0/1:39,20:32:59:0.339:2	0/1:17,15:30:32:0.469:2	0/1:27,32:31:59:0.542:2
chr20	3208423	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:31:78:0.051:2	./.	./.	./.	./.
chr20	3210034	rs138262189	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,31:31:55:0.564:2	./.	./.	./.	./.	./.	./.	./.
chr20	3210301	rs41281860	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,15:31:33:0.455:2	./.	0/1:0,36:31:36:1.00:2	./.	0/1:15,16:30:31:0.516:2	./.	0/1:11,14:30:25:0.560:2	./.
chr20	3211235	rs6084312	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,31:33:62:0.500:2	./.	0/1:1,56:32:57:0.982:2	./.	0/1:24,23:31:47:0.489:2	./.	0/1:19,17:34:36:0.472:2	./.
chr20	3212031	rs141705330	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,54:31:99:0.545:2	./.	./.	./.	./.	./.	./.
chr20	3214195	rs139459876	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,22:31:45:0.489:2	./.	./.	./.	./.	./.	./.	./.
chr20	3214196	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,22:32:42:0.524:2	./.	./.	./.	./.	./.	./.	./.
chr20	3214581	rs3803956	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,30:31:53:0.566:2	./.	./.	./.	0/1:31,36:30:67:0.537:2	0/1:27,23:32:50:0.460:2	./.	./.
chr20	3214819	rs3827075	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:21,20:30:41:0.488:2	0/1:18,14:29:32:0.438:2	./.	0/1:42,39:29:81:0.481:2	./.	0/1:48,31:29:79:0.392:2	./.	0/1:63,55:29:118:0.466:2	./.	0/1:3,24:30:27:0.889:2	0/1:22,20:28:42:0.476:2
chr20	3218563	rs79057061	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,10:30:21:0.476:2	./.	0/1:21,9:30:30:0.300:2	./.	0/1:9,17:28:26:0.654:2	./.	0/1:10,12:30:22:0.545:2	./.
chr20	3218595	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,7:32:18:0.389:2	./.	./.	./.	./.	./.	./.
chr20	3218634	rs3810562	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:36,11:31:47:0.234:2	0/1:8,5:28:13:0.385:2	./.	0/1:0,56:30:56:1.00:2	./.	0/1:28,22:29:50:0.440:2	./.	0/1:0,44:30:44:1.00:2	0/1:22,31:31:53:0.585:2	0/1:0,38:30:38:1.00:2	0/1:33,19:29:52:0.365:2
chr20	3277602	rs2236104	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,12:32:32:0.375:2	./.	./.	./.	0/1:16,8:32:24:0.333:2	0/1:17,12:33:29:0.414:2	./.	./.
chr20	3278682	rs41281886	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,40:32:92:0.435:2
chr20	3285126	rs2254916	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:23,23:32:46:0.500:2	0/1:16,17:31:33:0.515:2	0/1:2,3:32:5:0.600:2	./.	./.	./.	./.	./.	./.	0/1:14,17:30:31:0.548:2	0/1:34,45:32:79:0.570:2
chr20	3285140	rs2422864	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:33:44:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,61:33:61:1.00:2	0/1:14,9:31:23:0.391:2	0/1:0,59:32:59:1.00:2	0/1:31,15:33:46:0.326:2	0/1:0,70:32:70:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,78:33:78:1.00:2
chr20	3296358	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,6:31:61:0.098:2	./.
chr20	3362033	rs6051818	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,14:33:29:0.483:2	./.	./.	./.	0/1:21,13:33:34:0.382:2	0/1:23,23:32:46:0.500:2	./.	./.
chr20	3515924	rs151518	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,67:31:67:1.00:2	0/1:33,18:31:51:0.353:2	0/1:46,26:29:72:0.361:2	./.	0/1:0,53:30:53:1.00:2	./.	0/1:35,36:30:71:0.507:2	./.
chr20	3515951	rs151519	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,84:31:84:1.00:2	0/1:37,17:31:54:0.315:2	0/1:64,35:30:99:0.354:2	./.	0/1:0,68:31:68:1.00:2	./.	0/1:44,38:32:82:0.463:2	./.
chr20	3541382	rs17782078	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,88:32:197:0.447:2	./.	./.	./.	0/1:116,83:32:199:0.417:2	./.	0/1:97,95:32:192:0.495:2	./.
chr20	3556517	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,27:31:61:0.443:2
chr20	3564672	rs235540	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,112:32:112:1.00:2	0/1:1,77:31:78:0.987:2	0/1:0,23:32:23:1.00:2	./.	0/1:110,84:31:194:0.433:2	0/1:98,94:31:192:0.490:2	0/1:2,182:32:184:0.989:2	./.	0/1:0,174:33:174:1.00:2	0/1:82,74:32:156:0.474:2	0/1:0,170:32:170:1.00:2
chr20	3565350	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:29:40:0.100:2	./.	./.
chr20	3577062	rs3886999	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,19:31:57:0.333:2	./.	./.	./.	0/1:34,13:31:47:0.277:2	./.	0/1:11,17:32:28:0.607:2	./.
chr20	3624830	rs2246808	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,16:32:30:0.533:2	0/1:100,82:32:182:0.451:2	0/1:5,126:31:131:0.962:2	./.	0/1:2,156:32:159:0.987:2	0/1:95,94:32:189:0.497:2	0/1:1,168:32:169:0.994:2	0/1:103,70:32:173:0.405:2	0/1:1,158:32:159:0.994:2
chr20	3624848	rs34398666	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,14:32:31:0.452:2	0/1:81,75:32:156:0.481:2	./.	0/1:73,68:32:141:0.482:2	./.	./.	./.	./.	./.
chr20	3640823	rs2853208	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,20:33:36:0.556:2	0/1:6,9:32:15:0.600:2	0/1:1,5:32:6:0.833:2	0/1:30,24:32:54:0.444:2	./.	0/1:0,66:32:66:1.00:2	0/1:28,37:32:65:0.569:2	0/1:25,35:32:60:0.583:2	./.	0/1:27,24:32:51:0.471:2	0/1:31,20:33:51:0.392:2
chr20	3649659	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:32:98:0.041:2	./.	./.	./.	./.	./.
chr20	3649679	rs543749	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,26:31:64:0.406:2	./.	./.	./.	./.	0/1:27,22:31:49:0.449:2	./.
chr20	3650205	rs2280090	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,20:30:47:0.426:2	./.	0/1:45,20:31:65:0.308:2	./.	0/1:43,27:32:70:0.386:2	./.	0/1:39,21:30:60:0.350:2
chr20	3650234	rs2280091	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,20:29:45:0.444:2	./.	0/1:38,20:29:58:0.345:2	./.	0/1:54,32:30:86:0.372:2	./.	0/1:38,22:27:60:0.367:2
chr20	3651742	rs528557	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,82:29:83:1.00:2	./.	0/1:39,19:29:58:0.328:2	./.	0/1:36,36:30:72:0.500:2	0/1:41,30:28:71:0.423:2	0/1:26,26:30:53:0.500:2
chr20	3651765	rs3918396	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,43:29:90:0.483:2	./.	./.	./.	./.	./.	./.
chr20	3651791	rs148007711	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,49:30:103:0.476:2	./.	./.	./.	./.	./.
chr20	3670824	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:30:62:0.065:2	./.	./.
chr20	3672836	rs910653	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,17:29:18:0.944:2	./.	./.	0/1:11,5:31:16:0.313:2	./.	./.
chr20	3673329	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:32:60:0.067:2	./.	./.
chr20	3675333	rs3746638	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,6:30:19:0.316:2	./.	0/1:161,4:31:166:0.024:2	0/1:1,87:29:88:0.989:2	./.	0/1:95,68:29:163:0.417:2	0/1:72,54:31:126:0.429:2	./.	./.
chr20	3675498	rs709012	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,20:32:65:0.308:2	./.	0/1:0,36:31:37:1.00:2	./.	0/1:1,56:32:57:0.982:2	0/1:25,25:33:50:0.500:2	./.	./.
chr20	3677357	rs501538	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:32:44:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,90:33:90:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,90:34:90:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,65:33:65:1.00:2
chr20	3677736	rs673114	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,35:31:35:1.00:2	./.	0/1:10,16:32:27:0.615:2	0/1:16,10:32:26:0.385:2	./.	0/1:17,18:30:36:0.514:2
chr20	3679928	rs74423567	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,8:31:13:0.615:2	./.	./.	./.	0/1:20,13:30:33:0.394:2	./.	./.	./.
chr20	3682011	rs1018493	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,8:30:20:0.400:2	./.	./.	0/1:2,139:29:141:0.986:2	./.	0/1:96,87:30:183:0.475:2	0/1:88,61:30:149:0.409:2	./.	./.
chr20	3682149	rs13037869	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,132:32:134:0.992:2	./.	./.	./.	./.	./.
chr20	3682242	rs45472900	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,44:32:86:0.512:2	./.	./.	./.	0/1:51,57:32:108:0.528:2	./.	./.	./.
chr20	3682275	rs1018492	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,61:32:61:1.00:2	0/1:86,4:30:90:0.044:2	0/1:48,33:32:81:0.407:2	0/1:26,23:34:49:0.469:2	./.	./.
chr20	3684022	rs611847	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,10:29:23:0.435:2	0/1:102,81:30:183:0.443:2	./.	0/1:1,190:30:191:0.995:2	./.	0/1:2,180:30:182:0.989:2	0/1:103,88:31:191:0.461:2	./.	./.
chr20	3684729	rs625372	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:31:3:0.667:2	0/1:28,27:33:55:0.491:2	./.	0/1:0,39:33:39:1.00:2	./.	0/1:0,52:32:52:1.00:2	0/1:25,19:34:44:0.432:2	./.	./.
chr20	3686436	rs6037651	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,57:31:57:1.00:2	./.	0/1:38,27:31:65:0.415:2	0/1:30,21:33:51:0.412:2	./.	./.
chr20	3686515	rs201521093	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,35:32:92:0.380:2	./.	./.	./.	./.	./.	./.
chr20	3687141	rs150358287	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,14:31:32:0.438:2	./.	./.
chr20	3725583	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:33:35:0.114:2	./.	./.	./.	./.
chr20	3732225	rs60858447	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:30:10:0.300:2	./.
chr20	3732595	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:27:8:0.500:2	./.
chr20	3732633	rs541760	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.	0/1:0,6:32:6:1.00:2	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.
chr20	3736126	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,3:35:31:0.097:2	./.	./.
chr20	3783764	rs2228464	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,55:32:110:0.500:2	./.
chr20	3784110	rs1056720	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,99:30:182:0.544:2	./.	0/1:6,152:31:159:0.962:2	./.	./.	./.	./.
chr20	3785247	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:31:57:0.070:2	./.	./.
chr20	3838441	rs17857295	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,61:30:61:1.00:2	0/1:0,33:30:33:1.00:2	0/1:5,3:32:8:0.375:2	./.	./.	./.	./.	0/1:70,57:30:127:0.449:2	0/1:38,44:31:83:0.537:2	./.	0/1:31,45:30:76:0.592:2
chr20	3842984	rs2326369	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,40:32:83:0.482:2	./.	./.	./.	./.
chr20	3843027	rs7262903	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:30,20:31:50:0.400:2	0/1:21,14:32:35:0.400:2	./.	./.	./.	./.	./.	0/1:1,60:30:61:0.984:2	0/1:4,49:32:53:0.925:2	./.	./.
chr20	3844929	rs45437096	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,8:30:15:0.533:2	0/1:54,57:31:111:0.514:2	./.	./.	./.	./.	./.	./.	./.
chr20	3846397	rs7269320	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:24,17:30:41:0.415:2	0/1:20,10:32:30:0.333:2	./.	./.	./.	./.	./.	0/1:6,67:30:73:0.918:2	0/1:2,45:31:47:0.957:2	./.	./.
chr20	3888583	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:33:78:0.051:2	./.	./.
chr20	4053250	rs202038704	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,31:32:69:0.449:2	./.
chr20	4053254	rs6139288	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:32:64:1.00:2	0/1:0,36:32:36:1.00:2	0/1:9,7:32:16:0.438:2	0/1:0,100:33:100:1.00:2	0/1:1,113:32:114:0.991:2	0/1:0,107:32:107:1.00:2	0/1:0,137:32:137:1.00:2	0/1:63,60:32:123:0.488:2	0/1:53,47:34:100:0.470:2	0/1:31,34:31:65:0.523:2	0/1:0,78:33:78:1.00:2
chr20	4158164	rs11552911	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,22:30:48:0.458:2	./.	./.	./.	./.	./.	0/1:22,27:28:49:0.551:2	./.
chr20	4162978	rs17220872	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,19:29:50:0.380:2	./.	./.	0/1:24,20:28:44:0.455:2	./.
chr20	4163242	rs28927676	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:32:9:0.444:2	./.	./.	./.	0/1:4,56:31:60:0.933:2	0/1:52,53:32:105:0.505:2	0/1:54,32:32:86:0.372:2	0/1:42,39:32:81:0.481:2	0/1:40,45:31:86:0.529:2
chr20	4163302	rs1051904	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,51:29:97:0.526:2	0/1:53,31:28:84:0.369:2	0/1:10,6:31:16:0.375:2	0/1:95,62:29:157:0.395:2	0/1:118,79:28:197:0.401:2	0/1:117,80:29:197:0.406:2	0/1:4,161:28:165:0.976:2	0/1:103,90:29:193:0.466:2	0/1:77,55:29:132:0.417:2	0/1:51,51:29:102:0.500:2	0/1:1,135:29:136:0.993:2
chr20	4164283	rs1741327	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,13:32:22:0.591:2	./.	./.	0/1:7,8:31:15:0.533:2	0/1:7,12:30:19:0.632:2	0/1:13,9:30:22:0.409:2	0/1:0,16:31:16:1.00:2	0/1:0,28:31:28:1.00:2	0/1:8,17:31:25:0.680:2	0/1:11,14:31:25:0.560:2	0/1:0,16:31:16:1.00:2
chr20	4202747	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,5:25:47:0.106:2	./.	./.	./.	./.	./.
chr20	4228735	rs35105284	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,4:32:5:0.800:2	0/1:0,3:33:3:1.00:2	./.	./.	./.	./.	./.
chr20	4680217	rs8124214	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,38:29:83:0.458:2	./.	./.	./.	./.	./.
chr20	4680251	rs1799990	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:29:6:1.00:2	./.	./.	0/1:2,77:28:79:0.975:2	0/1:41,35:28:77:0.461:2	0/1:40,41:29:81:0.506:2	0/1:0,78:29:78:1.00:2	0/1:33,36:27:69:0.522:2	./.
chr20	4680309	rs181348299	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,43:31:97:0.443:2	./.	./.	./.	./.	./.	./.	./.
chr20	4681310	rs7274758	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,41:28:67:0.612:2	./.	./.	./.	./.	./.
chr20	4705274	rs41279424	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,52:31:99:0.525:2	0/1:29,22:30:51:0.431:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,40:31:80:0.500:2
chr20	4705718	rs2245220	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,29:32:61:0.475:2	0/1:28,30:32:58:0.517:2	0/1:23,17:30:40:0.425:2	0/1:40,33:31:73:0.452:2	0/1:25,31:32:56:0.554:2	0/1:0,25:33:25:1.00:2	0/1:23,19:32:42:0.452:2	./.
chr20	4705719	rs45475194	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:33:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	4705756	rs2756263	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,32:30:57:0.561:2	0/1:22,29:29:51:0.569:2	0/1:19,15:30:34:0.441:2	0/1:45,27:30:72:0.375:2	0/1:17,22:29:39:0.564:2	0/1:0,17:29:18:1.00:2	0/1:20,18:27:38:0.474:2	./.
chr20	4705865	rs2756262	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:35:3:1.00:2	0/1:18,14:33:32:0.438:2	0/1:21,13:33:34:0.382:2	0/1:10,17:30:27:0.630:2	0/1:15,25:32:40:0.625:2	0/1:26,12:31:38:0.316:2	0/1:0,25:33:25:1.00:2	0/1:13,11:30:24:0.458:2	./.
chr20	4706310	rs2756261	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:30:4:0.750:2	0/1:30,10:32:40:0.250:2	0/1:9,5:31:14:0.357:2	0/1:15,14:29:29:0.483:2	0/1:10,12:30:22:0.545:2	0/1:27,18:30:45:0.400:2	0/1:0,47:31:48:1.00:2	0/1:14,16:32:30:0.533:2	./.
chr20	4706502	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,10:21:50:0.200:2	./.	0/1:25,8:21:33:0.242:2
chr20	4706506	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,10:13:38:0.263:2	./.	./.
chr20	4706508	rs368917965	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,6:19:49:0.122:2	./.	./.	./.	./.	0/1:28,9:20:37:0.243:2	./.	./.
chr20	4706629	rs115638557	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,4:31:8:0.500:2	./.	./.	./.	./.	./.	./.
chr20	4706761	rs13036563	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:36:7:0.429:2	./.	./.
chr20	4707066	rs6139531	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.	./.	./.	./.	./.	./.	0/1:18,19:33:37:0.514:2	./.
chr20	4707112	rs4815731	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:30:4:1.00:2	0/1:19,20:30:39:0.513:2	./.	0/1:18,10:30:28:0.357:2	0/1:15,7:31:22:0.318:2	0/1:18,5:32:23:0.217:2	0/1:0,35:32:35:1.00:2	0/1:13,10:32:23:0.435:2	0/1:27,22:32:49:0.449:2
chr20	4707388	rs2735675	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,20:31:20:1.00:2	0/1:0,28:30:28:1.00:2	0/1:17,9:28:26:0.346:2	0/1:1,22:31:23:0.957:2	0/1:2,26:32:28:0.929:2	0/1:15,13:31:29:0.464:2	0/1:19,13:31:32:0.406:2
chr20	4707861	rs11087655	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,74:31:192:0.385:2	./.	./.	0/1:107,82:33:189:0.434:2	./.	0/1:121,71:32:192:0.370:2
chr20	4708130	rs1054600	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,61:32:121:0.504:2	0/1:48,38:32:86:0.442:2	0/1:12,4:32:16:0.250:2	0/1:79,91:33:170:0.535:2	0/1:0,127:32:127:1.00:2	0/1:2,175:32:177:0.989:2	0/1:0,108:32:108:1.00:2	0/1:5,166:32:171:0.971:2	0/1:87,64:32:151:0.424:2	0/1:0,121:32:121:1.00:2	0/1:0,174:32:174:1.00:2
chr20	4708425	rs35013700	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,9:33:27:0.333:2	./.
chr20	4708631	rs6139534	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,4:29:9:0.444:2	./.	./.	./.	./.	0/1:0,11:31:11:1.00:2	./.
chr20	4708713	rs2050373	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,34:30:34:1.00:2	0/1:0,24:31:24:1.00:2	./.	0/1:37,23:31:60:0.383:2	0/1:31,7:33:38:0.184:2	0/1:0,32:29:32:1.00:2	0/1:28,15:32:43:0.349:2	./.	0/1:0,35:32:35:1.00:2	./.	0/1:0,30:29:30:1.00:2
chr20	4708778	rs2050372	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,44:32:46:0.957:2	0/1:0,22:30:22:1.00:2	0/1:0,4:24:4:1.00:2	0/1:49,26:31:75:0.347:2	0/1:40,8:30:48:0.167:2	0/1:0,39:31:39:1.00:2	0/1:42,15:31:57:0.263:2	./.	0/1:0,51:31:51:1.00:2	./.	0/1:0,30:30:31:1.00:2
chr20	4708979	rs12625115	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:4,98:31:102:0.961:2	0/1:2,69:31:71:0.972:2	0/1:15,8:31:23:0.348:2	./.	0/1:81,64:31:145:0.441:2	0/1:87,73:30:160:0.456:2	0/1:74,68:31:142:0.479:2	./.	./.	./.	0/1:1,153:31:154:0.994:2
chr20	4776526	rs148149429	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,17:31:58:0.293:2	./.	./.	./.
chr20	4837804	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:31:167:0.024:2	./.	./.	./.
chr20	4843470	rs34073337	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,8:30:14:0.571:2	./.	./.	./.	./.	./.
chr20	4854682	rs1110277	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:29:8:0.625:2	./.	./.	0/1:61,43:30:104:0.413:2	./.	0/1:87,56:29:143:0.392:2	0/1:55,35:30:90:0.389:2	0/1:44,45:29:90:0.506:2	0/1:49,39:29:88:0.443:2
chr20	4855309	rs41282100	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,17:32:34:0.500:2	./.
chr20	4880308	rs1776964	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:32:9:1.00:2	0/1:40,47:33:87:0.540:2	0/1:37,51:32:88:0.580:2	./.	0/1:45,44:33:89:0.494:2	0/1:70,53:33:123:0.431:2	0/1:34,39:34:73:0.534:2	./.	0/1:0,78:33:78:1.00:2
chr20	5086918	rs147693982	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,27:31:49:0.551:2	./.	./.	./.	./.
chr20	5086939	rs6116651	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,7:31:21:0.333:2	./.	./.	./.	./.	./.	0/1:18,15:31:33:0.455:2	./.
chr20	5283256	rs3746682	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,36:30:72:0.500:2	0/1:32,35:30:67:0.522:2	0/1:6,4:31:10:0.400:2	0/1:0,118:30:118:1.00:2	0/1:1,84:30:85:0.988:2	0/1:62,44:28:106:0.415:2	0/1:61,47:30:108:0.435:2	0/1:1,111:30:112:0.991:2	0/1:64,53:31:117:0.453:2	0/1:50,42:30:92:0.457:2	0/1:68,65:29:133:0.489:2
chr20	5283316	rs3746683	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,27:28:55:0.491:2	0/1:48,24:29:72:0.333:2	./.	./.
chr20	5283376	rs3746684	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,13:29:29:0.448:2	0/1:11,6:31:17:0.353:2	./.	0/1:13,7:31:20:0.350:2	0/1:15,13:31:28:0.464:2	./.	0/1:17,16:31:33:0.485:2	./.
chr20	5542092	rs2273372	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,7:30:16:0.438:2	./.	./.	./.	./.	0/1:0,30:31:30:1.00:2
chr20	5550834	rs41282128	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,5:30:166:0.030:2	./.	./.	./.	./.	./.
chr20	5550862	rs61739696	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,5:30:178:0.028:2	./.	./.	./.	./.	./.
chr20	5556149	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,35:31:79:0.443:2	./.
chr20	5559143	rs41282130	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,45:31:103:0.437:2	./.	./.
chr20	5559155	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:34:120:0.033:2	./.	./.
chr20	5559221	rs150734510	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,44:32:106:0.415:2	./.	./.	./.
chr20	5753579	rs237422	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:60,41:32:101:0.406:2	0/1:32,33:32:65:0.508:2	./.	./.	0/1:47,55:31:102:0.539:2	./.	./.	0/1:57,56:31:113:0.496:2	./.	0/1:42,38:32:82:0.475:2	0/1:67,70:32:137:0.511:2
chr20	5753733	rs77420900	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,46:32:116:0.397:2	./.	./.	./.
chr20	5843812	rs1699233	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,20:32:62:0.323:2	0/1:40,20:32:60:0.333:2	0/1:0,14:30:14:1.00:2	0/1:79,35:32:114:0.307:2	0/1:47,33:32:80:0.413:2	0/1:37,37:32:74:0.500:2	0/1:2,96:32:98:0.980:2	0/1:0,87:33:87:1.00:2	0/1:64,32:32:96:0.333:2	./.	./.
chr20	5892306	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	5897040	rs76791154	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,48:32:94:0.511:2	./.	./.	./.	./.	./.	./.
chr20	5903067	rs6085324	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:13,9:32:22:0.409:2	0/1:15,13:32:28:0.464:2	0/1:2,3:31:5:0.600:2	./.	./.	0/1:2,37:31:39:0.949:2	./.	./.	./.	0/1:22,17:32:39:0.436:2	./.
chr20	5903069	rs138069166	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,9:33:23:0.391:2	0/1:15,13:33:28:0.464:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	5903131	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,4:29:58:0.069:2	./.	./.	./.	./.	./.	./.	./.
chr20	5903223	rs6133278	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,9:30:30:0.300:2	./.	./.	./.	./.	./.	./.
chr20	5903323	rs910122	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:29,22:32:51:0.431:2	0/1:22,11:31:33:0.333:2	0/1:2,3:30:5:0.600:2	./.	0/1:27,19:31:46:0.413:2	0/1:0,59:30:59:1.00:2	./.	./.	./.	0/1:17,20:33:37:0.541:2	./.
chr20	5903388	rs881118	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,10:33:38:0.263:2	./.	./.	./.	./.	./.	./.
chr20	5903517	rs236151	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,12:32:22:0.545:2	0/1:4,10:33:14:0.714:2	0/1:0,3:34:3:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,20:32:20:1.00:2	0/1:7,13:33:20:0.650:2	0/1:0,29:31:29:1.00:2	./.	0/1:0,11:34:11:1.00:2	./.
chr20	5903848	rs236152	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,13:32:25:0.520:2	0/1:6,6:32:12:0.500:2	./.	./.	0/1:9,8:29:17:0.471:2	0/1:0,15:32:15:1.00:2	./.	./.	./.	0/1:13,8:33:21:0.381:2	./.
chr20	5903894	rs236153	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,6:31:18:0.333:2	0/1:5,3:32:8:0.375:2	./.	./.	0/1:7,3:31:10:0.300:2	0/1:0,15:32:15:1.00:2	./.	./.	./.	0/1:4,4:32:8:0.500:2	./.
chr20	5904028	rs742710	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,11:33:27:0.407:2	./.	./.	./.	./.	./.	./.
chr20	5904040	rs742711	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,23:31:34:0.676:2	0/1:3,14:32:17:0.824:2	./.	./.	./.	0/1:0,41:31:41:1.00:2	./.	./.	./.	0/1:17,17:32:34:0.500:2	./.
chr20	5923203	rs394940	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,4:33:18:0.222:2	0/1:6,167:32:173:0.965:2	./.	./.	./.	0/1:193,5:32:199:0.025:2	./.	./.	./.
chr20	5923204	rs451571	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,4:32:18:0.222:2	0/1:6,167:32:173:0.965:2	./.	./.	./.	./.	./.	./.	./.
chr20	5924828	rs35861347	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:34:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	5932721	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,4:32:36:0.111:2	./.	./.	./.	./.	./.	./.	./.
chr20	5933108	rs236110	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,36:32:70:0.514:2	./.	./.	./.	./.	./.	./.	./.
chr20	5935262	rs189649618	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,36:32:98:0.367:2	./.	./.	./.	./.	./.	./.
chr20	5935850	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,4:31:91:0.044:2	./.	./.	./.	./.	./.	./.	./.
chr20	5943932	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:31:104:0.038:2	./.	./.	./.
chr20	5948171	.	G	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,3:30:17:0.176:2	0/1:95,19:23:114:0.167:2	0/1:102,24:22:126:0.190:2	0/1:97,19:18:117:0.164:2	0/1:106,21:22:127:0.165:2	0/1:104,18:22:122:0.148:2	0/1:100,9:26:109:0.083:2	0/1:82,13:19:95:0.137:2	0/1:101,10:25:111:0.090:2
chr20	5948227	rs16991615	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,31:31:72:0.431:2
chr20	5966763	rs61754763	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,30:32:67:0.448:2	./.	./.	./.
chr20	5974265	rs16991638	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:35:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	5988095	rs4813786	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,45:30:85:0.529:2	0/1:11,20:30:31:0.645:2	0/1:4,7:31:11:0.636:2	0/1:0,67:31:67:1.00:2	0/1:2,55:30:57:0.965:2	./.	0/1:0,53:30:53:1.00:2	0/1:3,70:31:73:0.959:2	0/1:0,73:31:73:1.00:2	0/1:32,33:31:65:0.508:2	0/1:32,35:31:67:0.522:2
chr20	6011934	rs41282950	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,31:31:70:0.443:2	0/1:36,25:31:61:0.410:2	./.	0/1:43,45:31:88:0.511:2	0/1:36,41:31:77:0.532:2	0/1:50,28:32:78:0.359:2	0/1:36,34:32:70:0.486:2	./.
chr20	6022456	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,4:31:118:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr20	6064710	rs753927	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,36:30:36:1.00:2	0/1:0,21:30:21:1.00:2	./.	0/1:25,30:29:55:0.545:2	0/1:31,24:29:55:0.436:2	0/1:1,70:29:71:0.986:2	./.	0/1:27,27:29:54:0.500:2	0/1:0,37:29:37:1.00:2	0/1:22,17:29:39:0.436:2	0/1:16,7:29:23:0.304:2
chr20	6064731	rs2232079	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,28:31:58:0.483:2	0/1:36,27:32:63:0.429:2	0/1:40,29:32:69:0.420:2	./.	./.	./.	./.	./.
chr20	6065729	rs2232074	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,172:32:172:1.00:2	0/1:1,116:32:117:0.991:2	0/1:23,8:30:31:0.258:2	0/1:96,98:31:194:0.505:2	0/1:89,70:30:159:0.440:2	0/1:0,191:30:191:1.00:2	./.	0/1:108,88:31:196:0.449:2	0/1:1,188:32:189:0.995:2	0/1:104,84:31:188:0.447:2	0/1:115,75:31:190:0.395:2
chr20	6065731	rs2232073	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,172:32:172:1.00:2	0/1:1,117:33:118:0.992:2	0/1:24,8:32:32:0.250:2	0/1:97,98:33:195:0.503:2	0/1:94,70:32:164:0.427:2	0/1:0,191:31:191:1.00:2	0/1:196,4:33:200:0.020:2	0/1:109,88:33:197:0.447:2	0/1:1,190:33:191:0.995:2	0/1:104,84:33:188:0.447:2	0/1:120,75:33:195:0.385:2
chr20	6069723	rs35413391	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,15:31:35:0.429:2	0/1:24,21:31:45:0.467:2	./.	./.
chr20	6077629	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,19:33:34:0.559:2	./.	./.
chr20	6088265	rs62200482	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,87:31:170:0.512:2	./.	0/1:66,105:31:172:0.614:2	./.	./.	./.	./.	./.
chr20	6090969	rs55666319	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:33:5:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	6093177	rs16991866	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,5:32:15:0.333:2	./.	0/1:22,18:32:40:0.450:2	./.	./.	./.	./.	./.
chr20	6096632	rs1056141	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,30:31:64:0.469:2	./.	0/1:25,34:31:59:0.576:2	./.	./.	./.	./.	./.
chr20	6100088	rs10373	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,90:30:192:0.471:2	0/1:44,47:28:91:0.516:2	0/1:0,35:29:35:1.00:2	0/1:0,158:29:158:1.00:2	0/1:2,180:29:182:0.989:2	0/1:95,98:29:193:0.508:2	0/1:105,89:28:194:0.459:2	0/1:0,183:29:183:1.00:2	0/1:110,79:30:189:0.418:2	0/1:107,78:29:185:0.422:2	./.
chr20	6751034	rs1049007	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:29:41:1.00:2	0/1:0,27:28:27:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,69:29:69:1.00:2	0/1:55,33:28:88:0.375:2	0/1:0,76:29:76:1.00:2	0/1:0,49:29:49:1.00:2	0/1:54,22:28:76:0.289:2	0/1:0,59:30:59:1.00:2	0/1:0,46:28:46:1.00:2	0/1:0,24:27:24:1.00:2
chr20	6751100	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,5:32:59:0.085:2	./.
chr20	6759115	rs235768	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:32:37:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,47:31:47:1.00:2	0/1:7,13:31:20:0.650:2	0/1:0,34:31:34:1.00:2	0/1:0,28:32:28:1.00:2	0/1:15,18:30:33:0.545:2	0/1:0,44:31:44:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,51:32:51:1.00:2
chr20	6759499	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:165,5:31:170:0.029:2	./.	./.	./.	./.	./.	./.
chr20	6759706	rs13037675	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,19:30:47:0.404:2	./.
chr20	7864263	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,4:31:81:0.049:2	./.	./.	./.	./.	./.	./.	./.
chr20	7963041	rs2076015	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,44:32:105:0.419:2	./.	./.	./.	./.	./.
chr20	7964476	rs1135711	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,27:31:48:0.563:2
chr20	7967980	rs17425725	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:67,56:32:123:0.455:2	0/1:29,21:32:50:0.420:2	./.	./.	./.	./.	0/1:59,54:32:113:0.478:2	./.	./.	./.	./.
chr20	7980390	rs1012891	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,5:31:19:0.263:2	0/1:5,5:32:10:0.500:2	0/1:2,3:33:5:0.600:2	0/1:5,5:32:10:0.500:2	./.	0/1:11,7:32:18:0.389:2	./.	./.	./.	./.	0/1:12,26:32:38:0.684:2
chr20	8130943	rs16994453	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,21:31:53:0.396:2	./.	./.	./.	./.
chr20	8698451	rs45608240	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,2:35:5:0.400:2	0/1:2,3:33:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	8717713	rs3761170	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,23:31:75:0.307:2	./.	0/1:45,40:32:85:0.471:2	./.	./.	0/1:58,44:31:102:0.431:2
chr20	8717719	rs189186909	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,44:32:105:0.419:2
chr20	8737734	rs2076413	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,28:32:28:1.00:2	./.	0/1:3,37:32:40:0.925:2	0/1:0,43:31:43:1.00:2	0/1:30,12:32:42:0.286:2	0/1:0,31:32:31:1.00:2	./.	0/1:33,20:32:53:0.377:2	./.	./.
chr20	8755243	rs2235613	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:33:58:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,9:32:9:1.00:2	0/1:1,41:32:42:0.976:2	0/1:0,31:32:31:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,61:31:61:1.00:2	0/1:30,44:32:74:0.595:2	0/1:24,21:32:45:0.467:2	./.	0/1:35,21:30:56:0.375:2
chr20	8769180	rs2327089	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:32:62:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,58:32:58:1.00:2	0/1:1,60:31:61:0.984:2	0/1:1,59:32:60:0.983:2	0/1:0,60:33:60:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,77:32:77:1.00:2
chr20	8770822	rs2294597	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,50:32:50:1.00:2	0/1:0,29:31:29:1.00:2	./.	0/1:34,26:32:60:0.433:2	0/1:0,55:31:55:1.00:2	0/1:46,27:31:73:0.370:2	0/1:1,40:32:41:0.976:2	./.	0/1:26,38:32:64:0.594:2	./.	./.
chr20	9288522	rs6077510	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,18:32:30:0.600:2	0/1:8,11:32:19:0.579:2	./.	0/1:20,20:32:40:0.500:2	0/1:0,36:31:36:1.00:2	0/1:30,12:31:42:0.286:2	0/1:0,23:31:23:1.00:2	0/1:15,8:31:23:0.348:2	0/1:14,24:33:38:0.632:2	0/1:0,27:32:27:1.00:2	0/1:0,50:31:50:1.00:2
chr20	9424810	rs6039471	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,3:31:15:0.200:2	0/1:4,6:33:10:0.600:2	./.	./.	0/1:10,5:33:15:0.333:2	./.
chr20	9424904	rs6056629	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,28:31:46:0.609:2	0/1:16,8:32:24:0.333:2	./.	./.	0/1:17,18:32:35:0.514:2	./.
chr20	9495503	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:136,7:32:143:0.049:2	./.	./.	./.	./.	./.	./.
chr20	9496716	rs2232264	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,59:30:105:0.562:2	./.	0/1:46,45:29:91:0.495:2	./.
chr20	9520133	rs6039495	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,62:31:166:0.373:2	./.	0/1:83,68:30:151:0.450:2	./.	./.	./.	./.	./.
chr20	9520142	rs12329540	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,59:32:145:0.407:2	./.	0/1:69,51:32:120:0.425:2	./.
chr20	9543622	rs2297345	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,34:31:69:0.493:2	0/1:61,42:31:103:0.408:2	0/1:2,62:31:64:0.969:2	0/1:0,93:32:93:1.00:2	./.	0/1:47,34:32:81:0.420:2	0/1:27,27:31:54:0.500:2	0/1:32,32:32:64:0.500:2
chr20	9546554	rs6133723	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,83:31:196:0.423:2	./.	./.	./.	./.
chr20	9547018	rs11700112	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,12:32:30:0.400:2	./.	./.	0/1:6,10:34:16:0.625:2	./.
chr20	9561423	rs201131316	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,71:31:136:0.522:2	./.	./.	./.	./.	./.
chr20	10018954	rs139625015	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,42:31:126:0.333:2	0/1:35,29:31:64:0.453:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	10019011	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,8:34:114:0.070:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	10019093	rs575534	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,81:32:83:0.976:2	0/1:0,64:32:64:1.00:2	0/1:17,6:33:23:0.261:2	0/1:83,56:32:139:0.403:2	0/1:49,40:31:89:0.449:2	0/1:0,95:32:95:1.00:2	0/1:0,88:32:88:1.00:2	./.	0/1:4,122:33:126:0.968:2	./.	0/1:0,126:32:126:1.00:2
chr20	10030188	rs652633	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:1,50:33:51:0.980:2	0/1:0,33:32:33:1.00:2	./.	./.	./.	./.	0/1:21,31:32:52:0.596:2	./.	0/1:36,32:33:68:0.471:2	./.	./.
chr20	10030452	rs524625	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:12,11:32:23:0.478:2	0/1:4,6:32:10:0.600:2	./.	./.	./.	./.	0/1:8,19:32:27:0.704:2	./.	0/1:16,17:33:33:0.515:2	./.	./.
chr20	10032413	rs683145	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,57:30:57:1.00:2	0/1:1,35:30:36:0.972:2	./.	./.	./.	./.	0/1:33,32:29:65:0.492:2	./.	0/1:31,59:30:90:0.656:2	./.	./.
chr20	10036202	rs6087119	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,34:32:75:0.453:2	0/1:20,25:32:45:0.556:2	./.	./.	./.	0/1:38,41:33:79:0.519:2
chr20	10277621	rs362998	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,31:30:59:0.525:2	./.	./.	./.	./.	./.	0/1:36,18:32:54:0.333:2	./.
chr20	10386013	rs1545	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,52:32:104:0.500:2	./.	./.
chr20	10386059	rs1547	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,39:33:82:0.476:2	./.	./.
chr20	10389422	rs137853909	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,35:33:66:0.530:2	./.	./.	./.	./.	./.	./.	./.
chr20	10393439	rs74315394	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,35:31:69:0.507:2	./.	./.
chr20	10393629	rs17852625	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,16:33:32:0.500:2	./.	./.
chr20	10394046	rs16991547	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,60:33:161:0.373:2	./.	./.
chr20	10603750	rs6077853	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,17:32:32:0.531:2	./.	./.	./.	./.	./.	./.	./.
chr20	10620275	rs1051421	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,11:29:24:0.458:2	./.	0/1:3,140:28:143:0.979:2	0/1:104,90:29:194:0.464:2	0/1:99,84:28:183:0.459:2	./.	./.	0/1:89,90:29:179:0.503:2	0/1:93,89:29:182:0.489:2
chr20	10620386	rs1051419	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,29:29:29:1.00:2	0/1:0,183:30:183:1.00:2	0/1:85,81:29:166:0.488:2	0/1:1,179:29:180:0.994:2	0/1:2,170:30:172:0.988:2	0/1:0,169:30:169:1.00:2	./.	0/1:1,185:29:186:0.995:2	0/1:85,100:29:185:0.541:2
chr20	10622501	rs35761929	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,8:30:25:0.320:2	./.	./.	./.	0/1:94,85:30:180:0.475:2	./.	./.	0/1:60,63:30:123:0.512:2	./.
chr20	10625804	rs1801140	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,10:33:16:0.625:2	./.	./.	0/1:66,54:32:120:0.450:2	0/1:68,56:32:124:0.452:2	0/1:84,77:31:161:0.478:2	./.	0/1:54,34:30:88:0.386:2	./.
chr20	10626016	rs79176844	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:79,6:21:85:0.071:2	./.	./.	./.	0/1:79,15:12:94:0.160:2	./.	0/1:107,17:12:125:0.137:2	./.	./.	./.	./.
chr20	10627707	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,32:30:125:0.256:2
chr20	10633237	rs1131695	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,17:31:45:0.378:2	0/1:14,15:32:29:0.517:2	0/1:5,3:29:8:0.375:2	0/1:44,41:31:85:0.482:2	0/1:27,33:31:60:0.550:2	0/1:2,65:31:67:0.970:2	./.	0/1:0,52:31:52:1.00:2	./.	0/1:24,20:32:44:0.455:2	./.
chr20	10637057	rs10485741	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,10:30:15:0.667:2	0/1:9,5:32:14:0.357:2
chr20	10639222	rs1801138	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,43:30:109:0.394:2	./.	./.	./.	0/1:1,93:30:94:0.989:2	./.	./.	./.
chr20	10653469	rs1051415	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,23:32:38:0.605:2	0/1:5,22:32:27:0.815:2
chr20	11791008	rs803665	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,81:32:150:0.540:2	0/1:57,46:32:103:0.447:2	0/1:20,11:32:31:0.355:2	0/1:2,149:31:151:0.987:2	0/1:0,159:31:159:1.00:2	0/1:0,147:32:147:1.00:2	0/1:0,188:32:188:1.00:2	0/1:107,69:32:176:0.392:2	0/1:0,181:33:181:1.00:2	0/1:0,149:32:149:1.00:2	0/1:0,160:32:160:1.00:2
chr20	11903654	rs35364034	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,57:32:104:0.548:2	./.
chr20	11904199	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:33:154:0.026:2	./.
chr20	11904225	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:34:139:0.029:2	./.	./.
chr20	13029764	rs1431433	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:27:41:1.00:2	0/1:0,17:28:17:1.00:2	0/1:0,4:27:4:1.00:2	0/1:0,21:28:21:1.00:2	0/1:0,17:27:17:1.00:2	0/1:0,45:28:45:1.00:2	0/1:0,24:27:24:1.00:2	0/1:0,34:28:34:1.00:2	0/1:0,30:28:30:1.00:2	0/1:0,28:28:28:1.00:2	0/1:0,52:27:52:1.00:2
chr20	13053018	rs243887	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:33:47:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,2:35:2:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,44:34:44:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,51:31:51:1.00:2
chr20	13053035	rs243888	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:30:45:1.00:2	0/1:0,25:29:25:1.00:2	0/1:0,2:32:2:1.00:2	0/1:19,15:29:34:0.441:2	0/1:0,14:29:14:1.00:2	0/1:1,23:29:24:0.958:2	0/1:1,15:30:16:0.938:2	0/1:36,14:29:50:0.280:2	0/1:24,23:31:47:0.489:2	0/1:0,24:30:24:1.00:2	0/1:0,44:29:44:1.00:2
chr20	13071816	rs6109692	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,80:31:190:0.421:2	./.	./.	./.	./.	0/1:82,86:32:168:0.512:2
chr20	13134768	rs6078938	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,60:33:183:0.328:2	./.	./.	./.	./.	./.
chr20	13140708	rs6109735	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:31:36:0.114:2	./.	./.
chr20	13251325	rs76665689	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,7:32:25:0.280:2	./.	./.	./.	./.	./.
chr20	13269248	rs3827705	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,33:31:61:0.541:2
chr20	13604141	rs149417289	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:30:131:0.031:2	./.
chr20	13605903	rs2070307	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,32:30:32:1.00:2	0/1:0,18:31:18:1.00:2	./.	./.	0/1:22,12:30:34:0.353:2	./.	0/1:21,9:29:30:0.300:2	0/1:21,22:30:43:0.512:2	0/1:18,11:32:29:0.379:2	./.	./.
chr20	13695607	rs34414644	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:99,48:33:147:0.327:2	0/1:41,50:32:91:0.549:2	0/1:7,10:32:17:0.588:2	./.	./.	./.	./.	./.	0/1:99,65:34:164:0.396:2	./.	./.
chr20	13695680	rs6110019	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,84:31:162:0.519:2	./.	0/1:0,118:31:118:1.00:2	0/1:8,92:32:100:0.920:2	./.	./.	0/1:2,123:32:125:0.984:2	0/1:83,61:32:144:0.424:2
chr20	13747441	rs3180370	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:62,49:32:111:0.441:2	0/1:35,29:32:64:0.453:2	0/1:0,18:32:18:1.00:2	0/1:0,80:32:80:1.00:2	./.	0/1:0,93:32:93:1.00:2	0/1:0,91:32:91:1.00:2	0/1:148,6:33:154:0.039:2	0/1:71,44:33:115:0.383:2	0/1:2,67:32:69:0.971:2	0/1:64,35:33:99:0.354:2
chr20	13830137	rs2073290	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,16:32:72:0.222:2	./.	./.	0/1:65,43:32:108:0.398:2	0/1:2,69:33:71:0.972:2	./.	./.
chr20	13830179	rs62640920	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,5:32:12:0.417:2	0/1:58,65:32:123:0.528:2	./.	0/1:61,60:31:121:0.496:2	./.	./.	./.	0/1:40,38:32:78:0.487:2	./.
chr20	13847407	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:31:177:0.023:2
chr20	13847420	rs660710	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,100:30:100:1.00:2	0/1:0,64:30:64:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,120:31:120:1.00:2	0/1:1,85:30:86:0.988:2	0/1:0,110:30:111:1.00:2	0/1:0,98:30:98:1.00:2	0/1:0,125:30:125:1.00:2	0/1:0,154:31:154:1.00:2	0/1:0,92:31:92:1.00:2	0/1:0,153:31:153:1.00:2
chr20	13912309	rs41275404	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,30:32:30:1.00:2	./.	./.	0/1:36,25:32:61:0.410:2	./.
chr20	14066276	rs2990505	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,40:31:82:0.488:2	0/1:29,11:31:40:0.275:2	0/1:33,19:30:52:0.365:2	0/1:0,52:31:52:1.00:2	./.	0/1:32,36:32:68:0.529:2	0/1:39,28:32:67:0.418:2	./.
chr20	14306896	rs6042672	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,34:32:65:0.523:2	0/1:19,30:32:49:0.612:2	./.	0/1:35,31:32:66:0.470:2	0/1:21,21:31:42:0.500:2	./.	0/1:2,59:32:61:0.967:2	./.	./.	./.	0/1:39,34:31:73:0.466:2
chr20	14306953	rs6079391	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,55:31:116:0.478:2	0/1:33,11:31:44:0.250:2	0/1:9,9:32:18:0.500:2	0/1:71,60:31:131:0.458:2	0/1:42,33:30:75:0.440:2	./.	./.	0/1:2,97:31:99:0.980:2	0/1:79,51:32:130:0.392:2	./.	0/1:75,62:31:137:0.453:2
chr20	14307019	rs36034779	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,88:28:194:0.454:2	./.	./.	./.
chr20	15967390	rs41275442	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:67,65:32:132:0.492:2	0/1:22,29:31:51:0.569:2	./.	0/1:60,55:31:115:0.478:2	./.	./.	0/1:39,26:32:65:0.400:2	0/1:80,43:32:123:0.350:2	./.	0/1:65,33:32:98:0.337:2	0/1:79,74:32:153:0.484:2
chr20	16254018	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:33:140:0.029:2	./.	./.	./.	./.	./.
chr20	16293011	rs201416098	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,15:31:47:0.319:2	./.	./.	./.	./.	./.
chr20	16347842	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,4:30:96:0.042:2	./.	./.	./.	./.	./.	./.	./.
chr20	16347865	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,4:33:106:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr20	16347886	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,5:29:128:0.039:2
chr20	16352401	rs8123195	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,68:32:155:0.439:2	./.	./.	./.	./.	./.
chr20	16359567	rs6034464	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,32:29:67:0.478:2	0/1:29,28:30:57:0.491:2	./.	0/1:0,57:29:57:1.00:2	0/1:0,62:29:62:1.00:2	0/1:33,36:29:69:0.522:2	0/1:29,27:30:56:0.482:2	0/1:32,26:28:58:0.448:2	0/1:43,33:29:76:0.434:2	./.	0/1:34,46:29:80:0.575:2
chr20	16359650	rs8116503	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,10:31:19:0.526:2	0/1:86,66:31:152:0.434:2	0/1:60,47:31:107:0.439:2	0/1:71,61:31:132:0.462:2	./.	./.	0/1:111,84:31:195:0.431:2	./.	0/1:105,84:30:189:0.444:2
chr20	16360240	rs117959133	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,38:31:84:0.452:2	./.	./.	./.	./.	./.	./.	./.
chr20	16409580	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,3:35:64:0.047:2	./.	./.	./.	./.	./.
chr20	16410559	rs34550969	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:30:7:0.429:2	0/1:15,24:32:39:0.615:2	0/1:12,15:31:27:0.556:2	./.	./.	0/1:24,14:31:38:0.368:2	0/1:25,21:33:46:0.457:2	./.	0/1:15,22:32:37:0.595:2
chr20	16486698	rs2295115	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,31:31:73:0.425:2	0/1:27,22:32:49:0.449:2	./.	./.	0/1:59,21:32:80:0.263:2	0/1:0,56:32:56:1.00:2	0/1:26,43:32:69:0.623:2	0/1:32,33:32:65:0.508:2
chr20	16492163	rs16997775	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,8:33:11:0.727:2	./.	./.	./.	./.	./.
chr20	16493533	rs6135775	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,18:32:31:0.581:2	0/1:9,15:31:24:0.625:2	./.	./.	0/1:26,18:32:44:0.409:2	0/1:0,34:32:34:1.00:2	0/1:20,28:32:48:0.583:2	0/1:18,32:31:52:0.640:2
chr20	16712899	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:28:95:0.042:2	./.	./.	./.	./.
chr20	16721581	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:125,4:32:129:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr20	16729138	rs6135876	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,56:31:103:0.544:2	./.	./.	./.	0/1:68,66:32:135:0.493:2	0/1:60,47:30:107:0.439:2	0/1:64,75:32:139:0.540:2
chr20	17474791	rs6080717	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:31:12:0.500:2	./.	./.	0/1:112,5:33:117:0.043:2	0/1:46,38:32:84:0.452:2	./.	0/1:62,60:33:122:0.492:2	0/1:47,53:33:100:0.530:2	./.
chr20	17474968	rs6080718	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,41:30:67:0.612:2	0/1:30,23:30:53:0.434:2	0/1:0,10:30:10:1.00:2	0/1:3,97:30:100:0.970:2	0/1:36,30:30:66:0.455:2	0/1:42,29:30:71:0.408:2	0/1:45,39:30:84:0.464:2	0/1:1,69:30:70:0.986:2	0/1:0,59:31:59:1.00:2	0/1:0,64:30:64:1.00:2	0/1:42,35:30:77:0.455:2
chr20	17475217	rs6136118	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,110:32:111:0.991:2	0/1:47,56:31:103:0.544:2	0/1:59,54:32:113:0.478:2	./.	0/1:102,51:32:153:0.333:2	0/1:60,54:33:114:0.474:2	0/1:58,45:32:103:0.437:2	./.
chr20	17477592	rs6080719	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,23:33:23:1.00:2	0/1:14,8:30:22:0.364:2	0/1:18,13:32:31:0.419:2	./.	0/1:10,19:30:29:0.655:2	0/1:12,10:33:22:0.455:2	0/1:6,4:32:10:0.400:2	./.
chr20	17581509	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:162,8:32:170:0.047:2	./.	./.	0/1:160,6:31:166:0.036:2	0/1:133,15:29:148:0.101:2	0/1:134,10:30:144:0.069:2	0/1:115,9:31:124:0.073:2	./.	./.	./.	./.
chr20	17596155	rs1132274	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,10:32:30:0.333:2	./.	./.	./.
chr20	17596582	rs61737094	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,36:30:72:0.500:2	./.	./.	./.	./.	./.	./.
chr20	17597482	rs41290441	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,16:30:53:0.302:2	0/1:15,13:31:28:0.464:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	17600357	rs11960	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,10:31:14:0.714:2	0/1:0,154:30:154:1.00:2	0/1:0,184:31:184:1.00:2	0/1:82,69:30:151:0.457:2	0/1:2,178:31:180:0.989:2	0/1:95,85:31:180:0.472:2	0/1:0,127:31:127:1.00:2	0/1:0,105:31:105:1.00:2	0/1:0,64:31:64:1.00:2
chr20	17602196	rs73898358	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,7:33:17:0.412:2	0/1:8,10:32:18:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	17602571	rs2229886	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,11:31:25:0.440:2	./.	./.	./.	./.	./.	./.	./.
chr20	17605240	rs6034867	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:30:40:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,86:31:86:1.00:2	0/1:0,108:30:108:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,94:30:94:1.00:2	0/1:0,77:31:77:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,53:31:54:1.00:2	0/1:0,56:31:56:1.00:2
chr20	17605269	rs61742496	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,21:33:43:0.488:2	0/1:15,9:32:24:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	17608170	rs2229888	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,15:31:38:0.405:2	0/1:15,6:31:21:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	17610604	rs138539631	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,12:29:19:0.632:2	./.	./.	./.	./.	./.
chr20	17614179	rs143879938	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,16:31:39:0.410:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	17639668	rs13036404	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,5:29:116:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	17639701	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:31:109:0.037:2	./.	./.
chr20	17639707	rs13036532	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,5:31:90:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	17639761	rs78602033	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:32,7:18:40:0.179:2	./.	./.	./.	./.	./.	./.	0/1:71,8:19:79:0.101:2	./.	0/1:59,8:15:70:0.119:2
chr20	17639786	rs62207197	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:70,8:26:79:0.103:2	./.	0/1:16,4:23:20:0.200:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	17639804	rs375708430	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:75,8:31:83:0.096:2	0/1:68,8:26:76:0.105:2	./.	0/1:89,6:31:95:0.063:2	./.	./.	./.	./.	./.	0/1:66,5:31:71:0.070:2	./.
chr20	17639807	rs78244614	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:75,5:29:80:0.063:2	0/1:71,5:30:77:0.066:2	./.	0/1:85,9:30:94:0.096:2	./.	0/1:97,6:28:103:0.058:2	0/1:44,5:27:49:0.102:2	0/1:88,8:30:96:0.083:2	0/1:74,11:30:85:0.129:2	0/1:64,6:28:70:0.086:2	0/1:44,13:29:57:0.228:2
chr20	17639816	rs62207198	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,7:24:81:0.088:2	./.	./.	./.	./.	0/1:82,12:22:94:0.128:2	./.	0/1:79,12:28:91:0.132:2	0/1:80,4:29:84:0.048:2	0/1:61,6:30:67:0.090:2	./.
chr20	17639820	rs111686038	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,7:27:88:0.080:2	./.	0/1:61,5:29:66:0.076:2	./.
chr20	17639834	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,6:30:80:0.075:2	./.	0/1:11,3:33:14:0.214:2	0/1:77,7:28:84:0.083:2	./.	./.	./.	./.	./.	0/1:62,4:29:66:0.061:2	./.
chr20	17639837	rs113442443	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:31:78:0.051:2	0/1:64,5:25:70:0.072:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	17639846	rs62207199	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:72,10:27:83:0.122:2	0/1:61,6:29:67:0.090:2	./.	0/1:70,8:26:78:0.103:2	0/1:36,5:22:41:0.122:2	0/1:79,8:29:87:0.092:2	./.	0/1:63,9:27:72:0.125:2	0/1:63,4:30:67:0.060:2	0/1:61,7:22:68:0.103:2	./.
chr20	17639850	rs111946504	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,7:23:80:0.088:2	0/1:61,4:29:65:0.062:2	0/1:11,3:29:14:0.214:2	0/1:68,8:26:76:0.105:2	0/1:35,5:29:40:0.125:2	./.	./.	0/1:64,4:29:68:0.059:2	./.	0/1:56,7:30:63:0.111:2	./.
chr20	17639857	rs77553739	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:58,18:31:76:0.237:2	0/1:44,17:29:62:0.279:2	./.	0/1:50,26:31:76:0.342:2	0/1:27,14:32:41:0.341:2	0/1:59,19:31:78:0.244:2	0/1:20,20:29:40:0.500:2	0/1:40,27:32:68:0.403:2	0/1:32,34:31:66:0.515:2	0/1:34,26:30:60:0.433:2	0/1:21,29:31:50:0.580:2
chr20	17639864	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,5:33:73:0.068:2	./.	./.	./.	./.	0/1:72,4:31:76:0.053:2	./.	./.	./.	./.	./.
chr20	17639867	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,5:32:73:0.068:2	./.	./.	0/1:57,4:32:61:0.066:2	./.	./.
chr20	17639876	rs202069077	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,8:32:63:0.127:2	0/1:41,11:32:52:0.212:2	./.	./.	./.	0/1:52,8:31:60:0.133:2	./.	./.	0/1:51,4:28:55:0.073:2	0/1:47,5:26:52:0.096:2	./.
chr20	17639880	rs367977419	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:38,8:32:46:0.174:2	./.	./.	./.	0/1:51,4:32:55:0.073:2	./.	./.	0/1:43,4:31:48:0.085:2	0/1:43,4:27:47:0.085:2	./.
chr20	17639893	rs12481263	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,4:33:36:0.111:2	./.	./.	0/1:34,3:32:37:0.081:2	./.	./.	0/1:57,4:32:61:0.066:2	0/1:51,3:34:54:0.056:2	./.	./.
chr20	17640009	rs13040917	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:32:55:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,67:31:68:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,95:31:95:1.00:2	0/1:0,78:31:78:1.00:2
chr20	17641019	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,76:30:166:0.458:2	./.	./.	./.	./.	./.
chr20	17705677	rs4814640	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:28:65:1.00:2	0/1:0,31:28:31:1.00:2	0/1:0,9:28:9:1.00:2	0/1:0,64:29:64:1.00:2	0/1:0,71:29:71:1.00:2	0/1:0,58:28:58:1.00:2	0/1:0,83:29:83:1.00:2	0/1:0,82:27:82:1.00:2	0/1:0,50:29:50:1.00:2	0/1:0,56:29:56:1.00:2	0/1:0,54:27:54:1.00:2
chr20	17716416	rs1053993	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:32:14:0.429:2	./.	./.	0/1:80,55:32:135:0.407:2	0/1:78,61:32:139:0.439:2	./.	./.	./.	0/1:30,56:32:86:0.651:2
chr20	17922987	.	T	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:72,4:33:76:0.053:2	./.	./.	./.	./.	0/1:117,5:32:122:0.041:2	./.	./.	0/1:119,4:33:123:0.033:2	./.
chr20	17932166	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:34:151:0.027:2	./.	./.	./.	./.	./.
chr20	17932210	rs2273448	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:31:13:0.462:2	./.	0/1:45,54:31:99:0.545:2	0/1:65,60:31:125:0.480:2	0/1:41,37:31:78:0.474:2	./.	0/1:94,54:32:148:0.365:2	0/1:75,55:32:130:0.423:2	./.
chr20	17932227	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:30:97:0.041:2	0/1:64,4:31:68:0.059:2	0/1:103,4:30:107:0.037:2	./.	./.	./.
chr20	17950545	rs11551768	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:21,29:29:50:0.580:2	0/1:15,11:32:26:0.423:2	./.	0/1:25,25:30:50:0.500:2	./.	./.	0/1:23,27:30:50:0.540:2	./.	./.	./.	./.
chr20	17956347	rs143417446	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,15:32:27:0.556:2	./.	./.
chr20	17968923	rs28455091	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:33:7:0.714:2	./.	0/1:50,31:31:81:0.383:2	0/1:38,49:32:87:0.563:2	0/1:59,28:32:87:0.322:2	./.	0/1:47,36:33:83:0.434:2	0/1:40,19:32:59:0.322:2	./.
chr20	18022362	rs6111803	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,39:31:90:0.433:2	./.	./.	./.	./.	./.	./.	./.
chr20	18037463	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr20	18142462	rs80113248	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:33:5:1.00:2	./.	0/1:8,4:33:12:0.333:2	./.	./.	./.	./.	./.	./.
chr20	18142564	rs3828013	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,9:31:29:0.310:2	./.	./.	./.	./.	./.	./.	./.
chr20	18143117	rs1205193	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:32:70:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,67:33:67:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,79:32:79:1.00:2	0/1:0,87:33:87:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,63:32:63:1.00:2
chr20	18143355	rs1205194	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,20:33:39:0.513:2	0/1:15,7:29:22:0.318:2	0/1:20,13:32:33:0.394:2	./.	0/1:10,16:32:26:0.615:2	0/1:1,44:33:45:0.978:2
chr20	18162481	rs11557577	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,10:30:19:0.526:2	./.	0/1:60,55:30:115:0.478:2	./.	./.	./.	./.	./.	./.
chr20	18167977	rs2747404	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:30:71:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,76:30:76:1.00:2	0/1:0,56:29:56:1.00:2	0/1:0,61:30:61:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,66:29:66:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,61:30:61:1.00:2	0/1:0,69:30:69:1.00:2
chr20	18295730	rs34099160	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,15:30:43:0.349:2	./.	./.	0/1:20,14:31:34:0.412:2	./.	0/1:20,16:30:36:0.444:2	./.	./.
chr20	18295861	rs2228274	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,33:33:51:0.647:2	./.
chr20	18296072	rs1033545	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:31:42:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,39:31:39:1.00:2	0/1:1,36:32:37:0.973:2	0/1:0,19:31:19:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,46:32:46:1.00:2
chr20	18296076	rs2228273	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,15:31:33:0.455:2	./.	./.	0/1:23,16:32:39:0.410:2	./.	0/1:19,8:33:27:0.296:2	./.	./.
chr20	18296473	rs1050475	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,13:32:42:0.310:2	./.
chr20	18297058	rs146429194	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,20:32:37:0.541:2	./.
chr20	18297193	rs1050476	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,40:31:80:0.500:2	./.
chr20	18297421	rs74739058	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:30:6:0.500:2	./.	./.	./.	./.	0/1:24,17:31:41:0.415:2	./.	./.	./.
chr20	18393312	rs6075337	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,130:32:130:1.00:2	0/1:0,67:33:67:1.00:2	0/1:10,7:33:17:0.412:2	0/1:1,132:33:133:0.992:2	0/1:44,46:31:91:0.511:2	0/1:73,59:32:132:0.447:2	0/1:2,108:33:110:0.982:2	0/1:69,61:32:130:0.469:2	0/1:4,158:33:162:0.975:2	0/1:67,48:32:115:0.417:2	0/1:0,134:32:134:1.00:2
chr20	18395988	rs6035037	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:20,14:32:34:0.412:2	0/1:8,9:33:17:0.529:2	./.	0/1:11,12:33:23:0.522:2	./.	./.	0/1:22,24:32:46:0.522:2	0/1:20,18:32:38:0.474:2	0/1:0,40:33:40:1.00:2	./.	0/1:28,24:32:52:0.462:2
chr20	18414356	rs6035042	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:29:66:1.00:2	0/1:0,42:30:42:1.00:2	0/1:5,10:29:15:0.667:2	0/1:0,111:29:112:1.00:2	0/1:52,56:29:108:0.519:2	0/1:0,110:29:110:1.00:2	0/1:0,133:29:133:1.00:2	0/1:91,94:28:185:0.508:2	0/1:0,122:30:122:1.00:2	0/1:0,92:29:92:1.00:2	0/1:1,103:29:104:0.990:2
chr20	18424032	rs41276434	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:85,96:32:181:0.530:2	./.	./.	./.	./.	./.	./.
chr20	18433273	rs201910386	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:38,7:16:45:0.156:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,7:19:36:0.200:2	./.
chr20	18433277	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,9:14:41:0.220:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	18433335	rs41276436	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,13:27:39:0.333:2	./.	./.	./.	0/1:31,39:29:70:0.557:2	./.
chr20	18445963	rs6035051	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:21,32:32:53:0.604:2	0/1:11,9:33:20:0.450:2	0/1:0,2:31:2:1.00:2	./.	0/1:39,20:31:59:0.339:2	0/1:0,44:31:44:1.00:2	./.	0/1:0,56:32:56:1.00:2	0/1:27,28:32:55:0.509:2	0/1:24,13:32:37:0.351:2	0/1:0,68:32:68:1.00:2
chr20	18454050	rs36071991	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,51:32:109:0.468:2	./.	./.	./.	./.	./.	./.
chr20	18462421	rs1055171	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:30:51:1.00:2	0/1:0,35:30:35:1.00:2	0/1:1,9:32:10:0.900:2	0/1:0,80:31:80:1.00:2	0/1:34,15:31:49:0.306:2	0/1:0,74:30:74:1.00:2	0/1:1,48:31:49:0.980:2	0/1:65,38:30:103:0.369:2	0/1:0,70:31:70:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,98:31:98:1.00:2
chr20	18477732	rs79331305	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,12:12:53:0.226:2	./.	0/1:43,16:14:59:0.271:2	0/1:49,13:10:62:0.210:2	./.	./.
chr20	18505081	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:32:140:0.029:2
chr20	18505200	rs36023150	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,55:31:120:0.458:2	./.	./.	./.	./.	./.
chr20	18506512	rs146917730	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,43:32:108:0.398:2
chr20	18513372	rs17807673	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,96:32:194:0.497:2	0/1:80,70:33:150:0.467:2	./.	0/1:70,48:33:118:0.407:2
chr20	18523002	rs2273526	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,23:32:57:0.404:2	./.	./.	./.
chr20	18576739	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:34:188:0.021:2	./.	./.
chr20	18794463	rs41308631	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,38:32:80:0.481:2	0/1:22,21:31:43:0.488:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	18794714	rs1053834	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,60:31:60:1.00:2	0/1:0,31:31:31:1.00:2	./.	0/1:41,27:30:68:0.397:2	./.	./.	./.	0/1:31,38:31:69:0.551:2	./.	./.	./.
chr20	18794754	rs1053839	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,59:31:59:1.00:2	0/1:1,31:32:32:0.969:2	./.	0/1:29,26:30:55:0.473:2	./.	./.	./.	0/1:22,29:30:51:0.569:2	./.	./.	./.
chr20	18810705	rs6136530	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,54:31:124:0.435:2	0/1:50,36:31:86:0.419:2	0/1:11,8:31:19:0.421:2	0/1:2,105:31:107:0.981:2	0/1:84,39:31:123:0.317:2	0/1:75,74:31:149:0.497:2	0/1:0,115:32:115:1.00:2	0/1:0,156:31:156:1.00:2	0/1:85,83:32:170:0.494:2	./.	0/1:100,62:31:162:0.383:2
chr20	19261623	rs1569767	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,45:32:91:0.495:2	0/1:29,24:32:53:0.453:2	./.	0/1:82,70:31:152:0.461:2	0/1:1,142:31:143:0.993:2	./.	0/1:1,171:32:172:0.994:2	./.	0/1:73,57:33:130:0.438:2	0/1:62,47:32:109:0.431:2	./.
chr20	19261696	rs34507363	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,27:31:62:0.435:2	0/1:20,13:32:33:0.394:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	19560664	rs3790261	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:100,87:31:188:0.465:2	0/1:92,85:32:177:0.480:2	0/1:0,57:31:57:1.00:2	0/1:92,96:32:188:0.511:2	0/1:0,184:32:185:1.00:2	0/1:1,185:31:186:0.995:2	0/1:3,176:32:179:0.983:2	0/1:103,91:32:194:0.469:2	0/1:99,82:32:182:0.453:2	0/1:0,179:32:180:1.00:2	0/1:0,174:32:174:1.00:2
chr20	19565671	rs17293432	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,27:31:54:0.500:2	./.	./.	./.	./.	0/1:24,42:32:66:0.636:2	./.	./.
chr20	19565693	rs3790267	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,26:31:68:0.382:2	./.	./.	./.
chr20	19634732	rs3790278	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:98,75:31:173:0.434:2	0/1:88,77:30:165:0.467:2	0/1:0,36:29:36:1.00:2	0/1:83,95:30:178:0.534:2	0/1:96,76:30:172:0.442:2	0/1:0,152:29:152:1.00:2	0/1:4,154:30:158:0.975:2	0/1:0,165:30:165:1.00:2	./.	0/1:0,170:31:170:1.00:2	0/1:99,61:31:161:0.381:2
chr20	19634747	rs3790279	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,66:32:154:0.429:2	0/1:83,69:33:152:0.454:2	0/1:0,30:32:30:1.00:2	0/1:91,101:33:192:0.526:2	0/1:97,73:32:170:0.429:2	0/1:0,176:32:176:1.00:2	0/1:3,131:32:134:0.978:2	0/1:1,188:32:189:0.995:2	./.	0/1:0,167:33:167:1.00:2	0/1:90,64:32:154:0.416:2
chr20	19937312	rs142502440	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	./.	0/1:44,25:29:69:0.362:2	./.	./.	./.	0/1:26,20:31:46:0.435:2	./.
chr20	19941367	rs45481396	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	./.	0/1:19,18:31:37:0.486:2	./.	./.	./.	0/1:16,18:31:34:0.529:2	./.
chr20	19951534	rs3803981	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,14:31:20:0.700:2	0/1:67,63:31:130:0.485:2	./.	./.	./.	./.	./.	./.	./.
chr20	19956007	rs367993633	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,13:33:22:0.591:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	19970705	rs2076584	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:46,55:33:101:0.545:2	0/1:34,28:32:62:0.452:2	0/1:5,3:33:8:0.375:2	./.	./.	0/1:54,30:32:84:0.357:2	0/1:78,52:32:130:0.400:2	0/1:87,46:32:133:0.346:2	./.	0/1:35,41:32:76:0.539:2	./.
chr20	19970888	rs35151304	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:57,58:33:115:0.504:2	0/1:33,45:32:78:0.577:2	./.	./.	./.	./.	0/1:110,67:32:177:0.379:2	0/1:92,73:32:165:0.442:2	./.	./.	./.
chr20	20006368	rs7263	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,3:30:7:0.429:2	./.	./.	./.	0/1:14,27:33:41:0.659:2	./.	./.
chr20	20007434	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:33:80:0.050:2
chr20	20024164	rs142507195	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:34:186:0.022:2	./.	./.
chr20	20032998	rs2255255	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	0/1:22,17:32:39:0.436:2	0/1:21,5:32:26:0.192:2	0/1:19,12:32:31:0.387:2	0/1:15,15:33:30:0.500:2	0/1:0,21:30:21:1.00:2	0/1:13,11:32:24:0.458:2
chr20	20033137	rs2255258	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:31:11:1.00:2	./.	0/1:57,44:31:101:0.436:2	0/1:55,47:31:102:0.461:2	0/1:51,29:30:80:0.363:2	0/1:41,43:32:84:0.512:2	0/1:0,77:32:77:1.00:2	0/1:0,80:31:80:1.00:2	0/1:25,22:32:47:0.468:2
chr20	20033223	rs2273056	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,10:31:22:0.455:2	./.	./.
chr20	20033242	rs2273057	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	0/1:17,12:29:29:0.414:2	./.	0/1:10,7:27:17:0.412:2	0/1:6,7:28:13:0.538:2	0/1:0,13:28:13:1.00:2	./.
chr20	20033319	rs2273058	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:32:6:1.00:2	./.	./.	0/1:32,15:32:47:0.319:2	0/1:23,21:30:44:0.477:2	0/1:54,21:32:75:0.280:2	0/1:26,21:33:47:0.447:2	0/1:0,22:33:22:1.00:2	0/1:34,13:33:47:0.277:2
chr20	20033367	rs7508949	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,12:28:12:1.00:2	./.	./.	0/1:48,26:29:74:0.351:2	0/1:55,40:28:95:0.421:2	0/1:64,34:28:99:0.347:2	0/1:46,30:29:76:0.395:2	0/1:1,29:27:30:0.967:2	0/1:55,25:27:80:0.313:2
chr20	20033380	rs3817995	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:33:11:1.00:2	./.	0/1:112,4:32:116:0.034:2	0/1:47,26:31:73:0.356:2	0/1:53,43:31:96:0.448:2	0/1:62,35:31:97:0.361:2	0/1:51,35:33:86:0.407:2	0/1:0,38:32:38:1.00:2	0/1:51,25:31:76:0.329:2
chr20	20071569	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:143,4:33:147:0.027:2	./.	./.	./.	./.	./.	./.
chr20	20079360	rs6075614	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,182:29:183:0.995:2	./.	./.	./.	./.	0/1:107,77:29:184:0.418:2
chr20	20144772	rs6081901	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:33:3:0.667:2	0/1:0,67:32:67:1.00:2	0/1:27,22:31:49:0.449:2	0/1:0,53:30:53:1.00:2	0/1:31,13:31:44:0.295:2	0/1:33,44:31:77:0.571:2	0/1:1,50:32:52:0.980:2	./.	0/1:0,51:31:51:1.00:2
chr20	20150027	rs6075630	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,58:32:60:0.967:2	0/1:0,31:32:31:1.00:2	./.	./.	0/1:51,20:30:71:0.282:2	0/1:0,74:30:74:1.00:2	./.	0/1:39,32:31:71:0.451:2	./.	./.	0/1:49,45:31:94:0.479:2
chr20	20152462	rs996197	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:31:37:1.00:2	0/1:0,29:31:29:1.00:2	0/1:4,4:31:8:0.500:2	0/1:21,20:32:41:0.488:2	0/1:0,63:30:63:1.00:2	0/1:0,51:30:51:1.00:2	0/1:1,42:30:43:0.977:2	0/1:0,61:30:61:1.00:2	0/1:29,39:31:68:0.574:2	0/1:1,40:31:41:0.976:2	0/1:0,53:30:53:1.00:2
chr20	20177519	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,5:32:153:0.033:2	./.
chr20	20232356	rs56102210	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:38,27:32:65:0.415:2	0/1:21,20:32:41:0.488:2	./.	./.	0/1:59,56:32:115:0.487:2	./.	./.	0/1:51,45:32:96:0.469:2	./.	./.	./.
chr20	20257958	rs2424317	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,29:29:60:0.483:2	./.	0/1:1,54:30:56:0.982:2	./.	./.	0/1:20,16:30:37:0.444:2	0/1:17,16:29:33:0.485:2	0/1:16,15:31:32:0.484:2
chr20	20350516	rs6137007	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:28:22:1.00:2	0/1:0,13:27:13:1.00:2	0/1:0,3:28:3:1.00:2	0/1:0,25:27:25:1.00:2	0/1:0,17:25:17:1.00:2	0/1:0,19:27:19:1.00:2	0/1:0,10:24:10:1.00:2	0/1:0,15:27:15:1.00:2	0/1:0,12:26:12:1.00:2	0/1:0,10:26:10:1.00:2	0/1:0,5:27:5:1.00:2
chr20	20350851	rs183926805	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,89:32:156:0.571:2	./.	./.	./.	./.	./.	./.
chr20	20350958	rs367919056	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:118,17:25:135:0.126:2	./.	./.	0/1:97,17:21:114:0.149:2	0/1:68,18:19:86:0.209:2	0/1:104,19:20:123:0.154:2	0/1:78,16:18:94:0.170:2	0/1:98,33:18:131:0.252:2	0/1:118,8:22:126:0.063:2	0/1:79,11:22:90:0.122:2	0/1:145,24:24:169:0.142:2
chr20	20373813	rs6035618	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,16:31:35:0.457:2	./.	./.	./.	./.	./.	./.
chr20	20373834	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,6:20:54:0.111:2	./.	./.	./.	./.	./.	./.	./.
chr20	20475809	rs117776965	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,33:32:67:0.493:2	./.	./.	./.	./.	./.	./.	./.
chr20	20484043	rs2273528	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,55:30:114:0.482:2	./.	./.	./.	./.	./.
chr20	20493222	rs35039408	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:33:6:0.667:2	0/1:26,34:31:60:0.567:2	0/1:20,24:31:44:0.545:2	0/1:31,22:31:53:0.415:2	./.	0/1:38,28:32:66:0.424:2	0/1:0,61:32:61:1.00:2	./.	./.
chr20	20493550	rs45484900	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,23:33:45:0.511:2	./.	./.	0/1:25,21:32:46:0.457:2	0/1:32,29:33:61:0.475:2
chr20	20620529	rs61761203	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,31:33:59:0.525:2	./.	./.
chr20	21142523	rs4815025	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,67:33:67:1.00:2	0/1:0,40:32:40:1.00:2	./.	0/1:43,43:33:86:0.500:2	0/1:0,112:32:112:1.00:2	0/1:34,54:32:88:0.614:2	0/1:67,42:32:109:0.385:2	0/1:73,62:33:135:0.459:2	0/1:61,60:34:121:0.496:2	./.	0/1:65,52:33:117:0.444:2
chr20	21142813	rs2236178	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,78:29:78:1.00:2	0/1:0,35:29:35:1.00:2	./.	0/1:59,54:29:113:0.478:2	0/1:0,69:28:69:1.00:2	0/1:46,43:28:89:0.483:2	0/1:41,43:29:84:0.512:2	0/1:39,53:29:92:0.576:2	0/1:62,42:29:104:0.404:2	./.	0/1:33,42:28:75:0.560:2
chr20	21314176	rs62217928	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,103:28:194:0.531:2	0/1:109,86:28:195:0.441:2	./.	./.	0/1:111,84:28:195:0.431:2	./.
chr20	21336798	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:30:73:0.055:2	./.	./.	./.
chr20	21494184	rs8192562	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:5,5:29:10:0.500:2	./.	./.	./.	./.	./.	0/1:6,8:29:14:0.571:2	./.	./.	0/1:5,6:27:11:0.545:2	./.
chr20	21687164	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:27:35:0.114:2	./.
chr20	22562674	rs1212275	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,98:33:181:0.541:2	0/1:40,44:31:85:0.524:2	0/1:0,35:33:35:1.00:2	0/1:1,184:33:185:0.995:2	0/1:93,92:33:185:0.497:2	0/1:0,180:32:180:1.00:2	0/1:1,179:33:181:0.994:2	0/1:1,177:32:178:0.994:2	0/1:0,187:33:188:1.00:2	0/1:84,90:32:174:0.517:2	0/1:0,177:32:177:1.00:2
chr20	22563270	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:33:124:0.032:2
chr20	23016854	rs35136964	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,25:31:51:0.490:2	./.	./.	./.	./.	./.
chr20	23016855	rs35129943	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,25:32:53:0.472:2	./.	./.	./.	./.	./.
chr20	23016970	rs3746726	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,17:29:22:0.773:2	0/1:1,175:29:176:0.994:2	0/1:111,78:29:189:0.413:2	./.	0/1:111,74:29:185:0.400:2	0/1:97,82:29:179:0.458:2	0/1:97,77:30:175:0.443:2	0/1:114,76:29:190:0.400:2	0/1:94,81:28:175:0.463:2
chr20	23017017	rs2567609	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,121:32:122:0.992:2	0/1:0,73:32:73:1.00:2	0/1:8,9:33:17:0.529:2	0/1:2,126:33:128:0.984:2	0/1:81,82:32:164:0.503:2	0/1:77,92:32:169:0.544:2	0/1:4,181:32:185:0.978:2	0/1:100,84:32:184:0.457:2	0/1:66,52:33:118:0.441:2	0/1:81,66:33:147:0.449:2	0/1:69,47:33:116:0.405:2
chr20	23017044	rs3746728	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,5:30:13:0.385:2	0/1:1,118:29:119:0.992:2	0/1:79,75:29:154:0.487:2	./.	0/1:119,51:28:170:0.300:2	0/1:104,71:29:175:0.406:2	0/1:54,53:30:107:0.495:2	0/1:63,54:30:117:0.462:2	0/1:53,39:30:92:0.424:2
chr20	23017082	rs2567608	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:31:76:1.00:2	0/1:0,51:31:51:1.00:2	0/1:7,3:32:10:0.300:2	0/1:1,74:32:75:0.987:2	0/1:53,52:31:105:0.495:2	0/1:61,56:32:117:0.479:2	0/1:3,109:32:112:0.973:2	0/1:69,56:32:125:0.448:2	0/1:45,55:32:100:0.550:2	0/1:36,47:31:83:0.566:2	0/1:34,35:32:69:0.507:2
chr20	23017294	rs4988478	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,17:32:41:0.415:2	./.	./.	./.	./.	./.
chr20	23029695	rs201702344	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,6:16:24:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	23065036	rs374027111	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,4:31:79:0.051:2	./.	./.	./.	./.	./.	./.	./.
chr20	23065209	rs3746731	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,5:32:14:0.357:2	./.	0/1:0,21:32:21:1.00:2	0/1:0,13:31:13:1.00:2	./.	0/1:7,5:33:12:0.417:2	0/1:0,18:31:18:1.00:2	0/1:0,17:31:17:1.00:2
chr20	23065342	rs3746732	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:15,15:28:30:0.500:2	0/1:14,6:28:20:0.300:2	./.	0/1:25,17:27:42:0.405:2	./.	0/1:0,47:28:47:1.00:2	0/1:0,44:28:44:1.00:2	0/1:36,23:28:59:0.390:2	0/1:19,17:29:36:0.472:2	0/1:0,35:28:35:1.00:2	0/1:0,37:26:37:1.00:2
chr20	23065879	rs34170527	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:120,61:30:181:0.337:2	./.	./.	./.	./.	./.	./.
chr20	23066338	rs6048539	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:8,6:28:14:0.429:2	./.	./.	0/1:5,8:28:13:0.615:2	./.	./.	./.	./.	./.	./.	./.
chr20	23345844	rs6048760	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,9:29:34:0.265:2	0/1:20,10:30:30:0.333:2	0/1:0,7:28:7:1.00:2	0/1:0,21:30:21:1.00:2	./.	0/1:0,36:30:36:1.00:2	./.	./.	0/1:28,25:31:53:0.472:2	0/1:27,15:29:42:0.357:2	0/1:30,25:30:55:0.455:2
chr20	23377815	rs17750862	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,30:31:83:0.366:2	./.	./.	./.
chr20	23420907	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:152,4:31:156:0.026:2	./.	./.	./.	./.	./.	./.
chr20	23421101	rs17757442	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,75:32:151:0.497:2	./.	./.	./.	./.	0/1:93,90:33:183:0.492:2	./.	./.
chr20	23424613	rs3746736	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,20:30:69:0.290:2	0/1:18,21:28:39:0.538:2	0/1:0,13:29:13:1.00:2	0/1:0,71:29:72:1.00:2	./.	0/1:0,69:29:69:1.00:2	./.	./.	0/1:42,37:30:79:0.468:2	0/1:49,32:30:81:0.395:2	0/1:39,38:29:77:0.494:2
chr20	23424638	rs3746737	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,37:31:72:0.514:2	./.	./.	./.	./.	./.	./.	./.
chr20	23472391	rs2983288	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,79:29:79:1.00:2	0/1:0,45:29:45:1.00:2	./.	0/1:0,120:30:120:1.00:2	0/1:0,94:30:94:1.00:2	0/1:1,121:29:122:0.992:2	0/1:1,97:29:98:0.990:2	0/1:1,109:29:110:0.991:2	0/1:0,124:30:124:1.00:2	0/1:53,49:30:102:0.480:2	0/1:64,68:28:133:0.515:2
chr20	23472508	rs143579230	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:31:124:0.032:2	./.	./.	./.
chr20	23531276	rs1028561	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,4:33:15:0.267:2	0/1:5,9:32:14:0.643:2	0/1:0,6:33:6:1.00:2	0/1:9,7:33:16:0.438:2	./.	0/1:0,24:31:24:1.00:2	./.	./.	0/1:9,5:34:14:0.357:2	./.	0/1:0,26:32:26:1.00:2
chr20	23546639	rs2295564	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:93,85:32:178:0.478:2	0/1:50,45:32:95:0.474:2	0/1:0,25:32:25:1.00:2	0/1:110,76:32:186:0.409:2	./.	0/1:0,185:32:185:1.00:2	./.	./.	0/1:104,86:34:190:0.453:2	./.	0/1:2,180:32:183:0.989:2
chr20	23584233	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:182,5:29:188:0.027:2	./.	./.	./.	./.	./.	./.
chr20	23586360	rs2983640	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,25:32:59:0.424:2	0/1:29,13:32:42:0.310:2	0/1:3,5:31:8:0.625:2	0/1:53,44:32:97:0.454:2	0/1:0,53:32:53:1.00:2	0/1:0,72:32:72:1.00:2	0/1:2,65:31:67:0.970:2	0/1:45,33:32:78:0.423:2	0/1:51,44:33:95:0.463:2	0/1:31,32:32:63:0.508:2	0/1:48,38:33:86:0.442:2
chr20	23618395	rs6138024	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:33:16:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,19:33:19:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,11:34:11:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,6:33:6:1.00:2
chr20	23618427	rs1064039	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	0/1:0,2:30:2:1.00:2
chr20	23666606	rs112139500	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,5:27:15:0.333:2	0/1:57,39:31:96:0.406:2	./.	./.	./.	0/1:57,40:30:97:0.412:2	./.	./.	0/1:50,44:30:94:0.468:2
chr20	23667748	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2	./.	./.	./.
chr20	23667794	rs45502595	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,5:30:172:0.029:2	./.	./.	0/1:169,6:32:175:0.034:2
chr20	23728528	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,8:31:126:0.063:2	./.	./.	./.
chr20	23729722	rs3188314	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:7,154:31:161:0.957:2	0/1:9,93:31:102:0.912:2	0/1:2,22:31:24:0.917:2	0/1:4,145:30:149:0.973:2	0/1:3,142:30:145:0.979:2	0/1:6,141:30:147:0.959:2	0/1:7,166:30:173:0.960:2	0/1:7,136:30:143:0.951:2	0/1:8,133:32:141:0.943:2	0/1:2,137:30:139:0.986:2	0/1:12,148:30:160:0.925:2
chr20	23729724	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,3:32:24:0.125:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	23729756	rs372538698	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,84:28:151:0.556:2	./.	./.	./.	./.	./.	./.	./.
chr20	23731412	rs2070856	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,55:32:102:0.539:2	./.	0/1:62,57:32:119:0.479:2	0/1:71,58:32:129:0.450:2	./.	./.	./.
chr20	23731426	rs13045477	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,41:31:78:0.526:2	./.	0/1:51,44:32:95:0.463:2	0/1:49,50:31:99:0.505:2	0/1:37,51:32:88:0.580:2	./.	./.
chr20	23731494	rs6076122	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:33:5:1.00:2	0/1:15,21:33:36:0.583:2	0/1:5,9:32:14:0.643:2	./.	0/1:12,6:33:18:0.333:2	0/1:0,38:32:38:1.00:2	0/1:2,32:32:34:0.941:2	0/1:14,13:32:28:0.481:2	0/1:0,31:33:31:1.00:2
chr20	23805930	rs199856966	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,6:26:105:0.057:2	./.	./.	./.	0/1:163,11:26:174:0.063:2	./.	./.	0/1:115,8:27:123:0.065:2
chr20	23805953	rs45539436	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	23860178	rs1799841	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:31:8:1.00:2	./.	0/1:67,55:30:122:0.451:2	0/1:58,65:30:123:0.528:2	./.	0/1:35,61:29:96:0.635:2	0/1:43,31:30:74:0.419:2	0/1:38,37:31:75:0.493:2	0/1:42,46:30:88:0.523:2
chr20	23965995	rs150377656	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,27:32:62:0.450:2	./.
chr20	23967096	rs148204497	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,13:30:37:0.351:2	0/1:20,15:29:35:0.429:2	./.	./.	./.	./.
chr20	23967230	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:29:90:0.044:2
chr20	24646071	rs139512326	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:30,32:28:62:0.516:2	0/1:25,26:30:51:0.510:2	./.	./.	./.	./.	./.	./.	./.	0/1:39,29:29:68:0.426:2	./.
chr20	24930085	rs227653	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,23:30:38:0.605:2	./.	0/1:29,29:30:58:0.500:2	./.	0/1:15,13:30:28:0.464:2
chr20	24939590	rs1056033	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,14:30:31:0.452:2	0/1:15,12:30:27:0.444:2	0/1:4,3:28:7:0.429:2	0/1:23,25:28:48:0.521:2	0/1:0,31:30:31:1.00:2	0/1:0,33:30:33:1.00:2	0/1:16,11:29:27:0.407:2	0/1:23,28:29:51:0.549:2	0/1:14,8:30:22:0.364:2	0/1:29,20:31:49:0.408:2	./.
chr20	24940353	rs140096851	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:31:8:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	24944447	rs1045772	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,41:30:84:0.488:2	./.	./.	./.	./.	./.	0/1:19,31:29:50:0.620:2	./.
chr20	24952147	rs78661674	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,21:32:38:0.553:2	./.	./.
chr20	24973247	rs11550623	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,20:32:38:0.526:2	./.	./.	./.	./.	./.	0/1:8,17:32:25:0.680:2	./.
chr20	24993220	rs56222810	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,42:29:82:0.519:2	./.	./.	./.	./.	./.	0/1:57,37:28:94:0.394:2	./.
chr20	24994275	rs6115001	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,23:30:54:0.426:2	./.	./.	./.	./.	./.	0/1:15,19:32:34:0.559:2	./.
chr20	24994289	rs6050249	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,14:31:28:0.500:2	./.	0/1:32,22:32:54:0.407:2	./.	0/1:14,23:32:37:0.622:2
chr20	25000683	rs145679432	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	25000734	rs6115003	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,55:31:130:0.423:2	./.	./.	./.	./.	./.	0/1:52,43:32:95:0.453:2	./.
chr20	25003705	rs41308619	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,32:32:70:0.457:2	./.	./.	./.
chr20	25011423	rs6050259	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,48:30:79:0.608:2	./.	0/1:40,44:30:84:0.524:2	0/1:75,50:30:126:0.400:2	0/1:59,61:29:120:0.508:2	0/1:43,41:31:84:0.488:2	0/1:42,42:29:84:0.500:2	0/1:36,32:29:68:0.471:2
chr20	25027526	rs6083730	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,110:32:110:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,17:32:17:1.00:2	0/1:107,76:31:183:0.415:2	0/1:107,83:32:190:0.437:2	0/1:0,166:31:166:1.00:2	./.	0/1:0,177:32:177:1.00:2	0/1:88,88:33:176:0.500:2	0/1:58,54:31:112:0.482:2	0/1:72,97:32:170:0.574:2
chr20	25038484	rs66817095	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:30:4:0.750:2	./.	./.	0/1:44,39:30:83:0.470:2	./.	./.	./.	./.	./.
chr20	25059381	rs56157240	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,61:31:135:0.452:2	./.	./.	0/1:50,56:31:106:0.528:2	0/1:58,71:31:129:0.550:2	0/1:54,50:31:105:0.481:2	0/1:1,95:32:96:0.990:2	./.
chr20	25059442	rs6138482	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,7:32:22:0.333:2	./.	./.	0/1:53,48:31:101:0.475:2	./.	./.	./.	./.	./.
chr20	25059546	rs12480307	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,56:29:115:0.487:2	./.	./.	0/1:55,58:29:113:0.513:2	0/1:43,43:29:86:0.500:2	0/1:50,45:30:95:0.474:2	0/1:0,90:29:90:1.00:2	./.
chr20	25187189	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,3:34:46:0.065:2	./.	./.
chr20	25187213	rs2076559	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,5:29:9:0.556:2	0/1:14,19:31:33:0.576:2	./.	0/1:21,20:30:41:0.488:2	0/1:23,18:31:41:0.439:2	0/1:24,17:31:41:0.415:2	0/1:17,22:31:39:0.564:2	0/1:19,16:31:35:0.457:2	./.
chr20	25187724	rs45506395	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,17:33:39:0.436:2	./.	./.	./.	./.	./.
chr20	25193949	rs2076561	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,4:32:12:0.333:2	0/1:37,46:31:83:0.554:2	./.	0/1:41,28:31:69:0.406:2	0/1:47,35:32:82:0.427:2	0/1:39,34:32:73:0.466:2	0/1:42,25:33:67:0.373:2	0/1:32,26:33:58:0.448:2	./.
chr20	25195509	rs6050446	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:33:27:1.00:2	0/1:0,19:33:19:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,61:33:61:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,47:33:47:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,49:34:49:1.00:2	0/1:0,44:33:44:1.00:2	0/1:40,26:32:66:0.394:2
chr20	25205826	rs142821004	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,34:32:58:0.586:2	./.	./.	./.
chr20	25255338	rs2227894	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,12:30:23:0.522:2	./.	0/1:16,4:33:20:0.200:2	./.	./.	./.
chr20	25259006	rs2228976	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,50:30:116:0.431:2	./.	./.	./.	0/1:0,97:31:98:1.00:2	./.	0/1:44,40:31:84:0.476:2
chr20	25260931	rs2227890	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,9:28:15:0.600:2	0/1:54,72:29:126:0.571:2	0/1:81,61:28:142:0.430:2	0/1:69,65:28:134:0.485:2	0/1:64,64:28:128:0.500:2	0/1:79,71:28:150:0.473:2	0/1:0,137:29:137:1.00:2	0/1:62,55:28:117:0.470:2	0/1:65,64:29:129:0.496:2
chr20	25262727	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,16:10:43:0.372:2	./.	./.	./.	0/1:29,16:8:45:0.356:2	./.	./.	./.
chr20	25262769	rs2227891	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,5:30:12:0.417:2	./.	./.	./.	0/1:0,20:31:20:1.00:2	./.	0/1:5,8:31:13:0.615:2
chr20	25264814	rs2227892	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,8:29:19:0.421:2	0/1:74,61:28:136:0.452:2	0/1:113,86:30:199:0.432:2	0/1:88,58:29:146:0.397:2	0/1:96,85:29:181:0.470:2	0/1:76,77:28:153:0.503:2	0/1:0,82:30:82:1.00:2	0/1:52,43:30:95:0.453:2	0/1:52,48:29:100:0.480:2
chr20	25275621	rs73598373	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,65:30:135:0.481:2	./.	0/1:78,64:30:142:0.451:2	./.	./.	./.
chr20	25276297	rs1130694	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:30:8:0.375:2	0/1:86,56:31:143:0.394:2	0/1:75,80:31:155:0.516:2	0/1:86,74:31:160:0.463:2	0/1:75,70:31:145:0.483:2	0/1:60,74:31:134:0.552:2	0/1:0,138:31:138:1.00:2	0/1:47,59:31:106:0.557:2	0/1:50,57:32:107:0.533:2
chr20	25282944	rs10966	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,5:31:8:0.625:2	0/1:28,34:32:62:0.548:2	0/1:23,26:31:49:0.531:2	0/1:30,27:32:57:0.474:2	0/1:29,54:33:83:0.651:2	0/1:45,23:32:68:0.338:2	0/1:0,62:33:62:1.00:2	0/1:21,19:32:40:0.475:2	0/1:44,35:32:79:0.443:2
chr20	25288632	rs6107027	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,14:33:14:1.00:2	0/1:0,14:30:14:1.00:2	./.	0/1:15,15:32:30:0.500:2	0/1:5,10:32:15:0.667:2	./.	0/1:8,4:33:12:0.333:2	./.	./.	0/1:21,13:31:34:0.382:2	0/1:21,24:32:45:0.533:2
chr20	25397811	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:32:43:0.093:2	./.
chr20	25398790	rs6076347	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:79,78:32:157:0.497:2	0/1:40,33:32:73:0.452:2	0/1:6,6:31:12:0.500:2	0/1:82,79:31:161:0.491:2	0/1:93,61:32:155:0.396:2	./.	0/1:67,53:32:120:0.442:2	./.	./.	0/1:73,67:31:140:0.479:2	0/1:90,65:31:155:0.419:2
chr20	25434139	rs17857107	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,38:30:83:0.458:2	./.	./.	./.	./.
chr20	25456698	rs35666277	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,44:30:114:0.386:2	./.	0/1:70,58:30:128:0.453:2	./.	./.	./.
chr20	25456888	rs437635	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:35:5:0.600:2	0/1:24,15:32:39:0.385:2	0/1:20,24:30:44:0.545:2	0/1:25,33:29:58:0.569:2	0/1:22,6:31:28:0.214:2	0/1:20,25:31:45:0.556:2	0/1:0,50:31:50:1.00:2	0/1:19,21:30:40:0.525:2	0/1:20,23:31:43:0.535:2
chr20	25457022	rs6115193	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,11:28:33:0.333:2	./.	./.	./.	./.
chr20	25457555	rs141954162	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,24:31:49:0.490:2	0/1:6,16:31:22:0.727:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	25459764	rs11905437	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,31:28:79:0.392:2	./.	./.	./.	./.
chr20	25484623	rs13044759	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,9:30:22:0.409:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	25655822	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,42:32:129:0.326:2	./.
chr20	25657029	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:36:130:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	25666642	rs6115256	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,24:31:100:0.240:2	./.	./.	./.	./.
chr20	25666737	rs926487	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,17:29:53:0.321:2	./.	0/1:26,28:29:54:0.519:2	./.	./.	./.
chr20	25755526	rs112684378	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,3:30:7:0.429:2	./.	./.	0/1:9,3:30:12:0.250:2	0/1:10,7:31:17:0.412:2	0/1:24,5:31:29:0.172:2	0/1:1,6:31:7:0.857:2	0/1:26,8:30:34:0.235:2	0/1:5,3:28:8:0.375:2	0/1:8,5:32:13:0.385:2	0/1:2,4:27:6:0.667:2
chr20	25755527	rs199613392	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,3:30:17:0.176:2	./.	./.	0/1:30,4:27:34:0.118:2	./.	./.	./.
chr20	25755549	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,5:33:28:0.179:2	./.	./.	./.	./.	./.
chr20	25755558	rs113169583	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,3:32:6:0.500:2	./.	./.	0/1:9,4:30:13:0.308:2	0/1:8,10:30:18:0.556:2	0/1:25,5:31:30:0.167:2	0/1:1,6:29:7:0.857:2	0/1:23,10:30:33:0.303:2	./.	0/1:8,5:30:13:0.385:2	0/1:1,3:26:4:0.750:2
chr20	25755562	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,5:32:30:0.167:2	./.	0/1:29,5:22:34:0.147:2	./.	./.	./.
chr20	25755574	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,5:29:14:0.357:2	0/1:18,5:31:23:0.217:2	0/1:1,6:30:7:0.857:2	0/1:18,12:31:30:0.400:2	./.	0/1:4,4:32:8:0.500:2	0/1:1,2:32:3:0.667:2
chr20	25755671	rs6076387	G	A,T	.	PASS	AC=2,1;AF=0.222,0.111;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0/1:32:15:0.333:2	0/2:33:151:0.026:2	./.	./.	0/1:31:98:0.480:2	./.	./.	./.	./.
chr20	25755672	rs2721991	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,50:30:82:0.610:2	0/1:19,16:31:35:0.457:2	0/1:11,5:29:16:0.313:2	0/1:114,38:29:152:0.250:2	./.	0/1:100,85:30:186:0.459:2	./.	0/1:109,73:30:182:0.401:2	./.	0/1:73,41:30:114:0.360:2	./.
chr20	25755770	rs371022792	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:183,5:32:188:0.027:2	./.	./.	./.	./.	./.	./.
chr20	25755812	rs190264778	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:162,4:33:166:0.024:2	0/1:131,11:31:142:0.077:2	0/1:168,5:33:173:0.029:2	./.	0/1:144,5:33:149:0.034:2	./.	./.	0/1:105,6:30:111:0.054:2
chr20	25755825	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,5:32:101:0.050:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	25755850	rs79058598	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:143,5:33:148:0.034:2	0/1:130,12:29:142:0.085:2	./.	./.	./.	./.	./.	0/1:106,5:30:111:0.045:2
chr20	25829303	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,5:32:96:0.052:2	./.	./.	./.
chr20	25829312	rs78355493	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:86,8:32:94:0.085:2	./.	0/1:129,5:31:134:0.037:2	0/1:108,5:28:113:0.044:2	./.	0/1:83,4:32:87:0.046:2	./.	0/1:86,4:33:90:0.044:2	./.
chr20	25829319	rs76467023	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,14:28:77:0.182:2	0/1:78,12:30:90:0.133:2	0/1:68,10:30:78:0.128:2	0/1:79,14:29:93:0.151:2	0/1:122,12:27:134:0.090:2	0/1:89,16:28:105:0.152:2	0/1:99,18:30:117:0.154:2	0/1:80,10:30:90:0.111:2	0/1:99,10:31:109:0.092:2	0/1:72,16:29:88:0.182:2	0/1:72,17:29:90:0.191:2
chr20	25829329	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,4:35:80:0.050:2	./.	./.	./.	./.	./.	./.	./.
chr20	25829339	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,5:32:111:0.045:2	0/1:81,4:32:85:0.047:2	./.	./.	./.
chr20	25829342	rs75063166	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,6:31:88:0.068:2	./.	0/1:95,6:31:101:0.059:2	0/1:106,4:31:110:0.036:2	0/1:89,4:33:93:0.043:2	./.	0/1:79,7:34:86:0.081:2	./.
chr20	25829384	rs75757905	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:68,12:31:80:0.150:2	0/1:92,10:33:102:0.098:2	./.	0/1:70,10:27:80:0.125:2	0/1:102,19:30:121:0.157:2	0/1:87,18:33:105:0.171:2	0/1:110,11:31:121:0.091:2	0/1:88,15:30:103:0.146:2	0/1:98,11:26:109:0.101:2	0/1:76,17:31:93:0.183:2	0/1:88,12:29:100:0.120:2
chr20	25829386	rs74835374	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,12:31:83:0.145:2	0/1:93,11:32:104:0.106:2	0/1:35,3:31:38:0.079:2	0/1:72,10:30:82:0.122:2	0/1:101,19:31:120:0.158:2	0/1:89,18:32:107:0.168:2	0/1:109,11:32:120:0.092:2	0/1:86,14:29:101:0.140:2	0/1:99,11:29:110:0.100:2	0/1:77,17:31:94:0.181:2	0/1:87,12:30:99:0.121:2
chr20	26049773	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,99:32:155:0.639:2	0/1:69,95:31:164:0.579:2	0/1:49,11:31:60:0.183:2	0/1:135,41:31:176:0.233:2	0/1:67,118:32:185:0.638:2	./.	0/1:74,106:32:180:0.589:2	0/1:141,38:31:179:0.212:2	0/1:5,164:32:169:0.970:2	0/1:140,37:32:178:0.209:2	0/1:61,103:31:164:0.628:2
chr20	26049834	.	A	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:159,7:30:166:0.042:2	0/1:151,6:30:157:0.038:2	./.	./.	0/1:176,7:30:183:0.038:2	0/1:181,5:28:186:0.027:2	./.	0/1:179,6:31:185:0.032:2	0/1:157,16:29:173:0.092:2	0/1:172,6:31:178:0.034:2	0/1:162,10:29:172:0.058:2
chr20	26049845	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,7:29:187:0.037:2	./.	./.	0/1:169,4:31:173:0.023:2	0/1:176,4:32:180:0.022:2	./.
chr20	26054416	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:31:193:0.026:2	./.	./.	./.	./.
chr20	26054422	rs375482261	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:167,6:32:173:0.035:2	0/1:91,6:32:97:0.062:2	./.	./.	0/1:171,7:32:178:0.039:2	./.	0/1:182,12:29:194:0.062:2	./.	0/1:131,13:34:144:0.090:2	./.	0/1:167,11:31:178:0.062:2
chr20	26054424	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:176,5:30:181:0.028:2	./.	0/1:177,10:31:188:0.053:2	./.	./.	0/1:179,7:33:186:0.038:2	./.
chr20	26054425	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:186,4:33:190:0.021:2	./.	./.	0/1:179,10:30:190:0.053:2	./.	./.	0/1:178,7:33:185:0.038:2	./.
chr20	26054429	.	C	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,5:31:189:0.026:2	./.	./.	0/1:144,4:32:148:0.027:2	0/1:175,10:31:185:0.054:2	./.
chr20	26054441	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,6:34:191:0.031:2	./.
chr20	26054459	rs199895471	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,4:29:28:0.143:2	0/1:140,22:30:162:0.136:2	./.	0/1:137,32:28:169:0.189:2	./.	0/1:130,18:30:148:0.122:2	./.	0/1:118,29:30:147:0.197:2	./.
chr20	26054460	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:157,6:30:163:0.037:2	./.	./.	./.	./.	./.	./.	./.
chr20	26054478	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,5:31:142:0.035:2	./.	./.	./.	./.	./.
chr20	26061803	rs78281752	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,13:27:40:0.325:2	0/1:26,4:27:30:0.133:2	0/1:17,8:27:25:0.320:2	./.	0/1:31,4:31:35:0.114:2	./.	0/1:30,6:25:36:0.167:2	0/1:39,5:24:44:0.114:2
chr20	26061818	rs112101451	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,4:32:43:0.093:2	./.	0/1:20,5:32:25:0.200:2	./.	./.	0/1:41,3:33:44:0.068:2	./.	./.
chr20	26061859	rs74752031	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:86,4:30:90:0.044:2	0/1:37,9:29:46:0.196:2	./.	0/1:43,6:31:49:0.122:2	0/1:56,8:30:64:0.125:2	0/1:3,9:29:12:0.750:2	./.	0/1:45,8:29:53:0.151:2	0/1:82,5:32:87:0.057:2	0/1:29,9:31:38:0.237:2	0/1:69,7:26:76:0.092:2
chr20	26061861	rs375533025	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:39,9:32:48:0.188:2	./.	0/1:45,4:33:49:0.082:2	./.	0/1:8,4:29:12:0.333:2	./.	0/1:51,4:32:55:0.073:2	./.	0/1:33,6:33:39:0.154:2	0/1:74,5:32:79:0.063:2
chr20	26061909	rs116264914	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,4:31:74:0.055:2	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	0/1:135,4:33:139:0.029:2
chr20	26061922	rs75066699	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,4:33:91:0.044:2	./.	0/1:17,5:32:22:0.227:2	./.	0/1:93,6:32:99:0.061:2	./.	./.	0/1:145,8:30:153:0.052:2
chr20	26061960	rs144572655	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:92,4:31:96:0.042:2	./.	0/1:133,13:31:146:0.089:2	0/1:171,5:31:176:0.028:2	0/1:47,12:31:59:0.203:2	./.	0/1:144,17:30:161:0.106:2	./.	0/1:107,8:32:115:0.070:2	0/1:146,11:32:157:0.070:2
chr20	26062002	rs74725001	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:139,4:31:144:0.028:2	0/1:114,5:30:119:0.042:2	./.	0/1:135,10:33:145:0.069:2	0/1:155,5:32:161:0.031:2	0/1:56,10:33:66:0.152:2	./.	0/1:140,13:33:154:0.085:2	./.	0/1:124,8:32:133:0.061:2	0/1:139,5:34:144:0.035:2
chr20	26062021	rs79451834	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:120,4:33:124:0.032:2	./.	0/1:43,4:33:47:0.085:2	./.	0/1:124,5:32:129:0.039:2	./.	./.	./.
chr20	26063560	rs5742261	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:42,31:31:73:0.425:2	0/1:27,15:30:42:0.357:2	./.	./.	0/1:33,43:28:76:0.566:2	./.	0/1:33,21:31:54:0.389:2	0/1:0,44:29:44:1.00:2	0/1:1,74:31:75:0.987:2	0/1:0,22:31:22:1.00:2	0/1:36,24:31:60:0.400:2
chr20	26188824	rs28670321	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	0/1:1,4:26:5:0.800:2	0/1:0,2:28:2:1.00:2	./.	./.	./.
chr20	29623175	rs76771829	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:162,18:30:180:0.100:2	0/1:133,18:32:151:0.119:2	0/1:60,5:32:65:0.077:2	0/1:170,23:32:193:0.119:2	0/1:179,10:31:189:0.053:2	0/1:164,24:32:188:0.128:2	0/1:172,21:30:193:0.109:2	0/1:170,15:31:185:0.081:2	0/1:167,19:33:187:0.102:2	0/1:163,17:32:181:0.094:2	0/1:160,24:33:184:0.130:2
chr20	29623182	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,6:30:184:0.033:2	0/1:178,5:29:183:0.027:2
chr20	29623210	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:148,12:29:161:0.075:2	0/1:167,7:27:174:0.040:2	0/1:91,7:29:98:0.071:2	0/1:176,12:30:188:0.064:2	0/1:178,7:31:185:0.038:2	0/1:162,14:30:176:0.080:2	0/1:179,10:29:190:0.053:2	0/1:174,18:30:192:0.094:2	0/1:158,26:30:184:0.141:2	0/1:168,10:30:178:0.056:2	0/1:153,20:30:173:0.116:2
chr20	29623214	rs367590609	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:156,4:32:160:0.025:2	0/1:171,4:32:175:0.023:2	./.	./.	./.	0/1:179,5:31:184:0.027:2	./.	0/1:179,8:32:187:0.043:2	./.	0/1:162,10:33:172:0.058:2	0/1:176,6:33:182:0.033:2
chr20	29623215	rs77485836	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:144,16:31:160:0.100:2	0/1:159,15:31:174:0.086:2	./.	0/1:162,24:31:186:0.129:2	0/1:167,10:31:177:0.056:2	0/1:167,17:32:184:0.092:2	0/1:182,6:34:188:0.032:2	0/1:171,13:31:184:0.071:2	0/1:169,14:32:183:0.077:2	0/1:165,12:32:177:0.068:2	0/1:166,16:33:182:0.088:2
chr20	29623217	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:145,15:32:160:0.094:2	0/1:158,17:31:175:0.097:2	0/1:93,8:29:101:0.079:2	0/1:183,5:31:188:0.027:2	0/1:167,9:31:176:0.051:2	0/1:174,9:31:183:0.049:2	0/1:162,20:31:182:0.110:2	0/1:175,10:29:185:0.054:2	0/1:168,15:31:183:0.082:2	0/1:165,12:29:177:0.068:2	0/1:174,7:30:181:0.039:2
chr20	29623218	rs368763678	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:151,9:33:160:0.056:2	0/1:162,13:27:175:0.074:2	0/1:87,13:30:100:0.130:2	0/1:180,9:29:189:0.048:2	./.	0/1:170,14:31:184:0.076:2	0/1:155,27:29:182:0.148:2	0/1:159,27:30:186:0.145:2	./.	0/1:154,23:31:177:0.130:2	./.
chr20	29623223	rs10439604	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:121,37:31:158:0.234:2	0/1:118,55:32:174:0.318:2	0/1:64,31:32:95:0.326:2	0/1:114,58:33:172:0.337:2	0/1:96,78:32:174:0.448:2	0/1:120,55:33:175:0.314:2	0/1:112,57:33:170:0.337:2	0/1:135,49:32:184:0.266:2	0/1:122,48:31:170:0.282:2	0/1:124,52:33:176:0.295:2	0/1:107,74:30:182:0.409:2
chr20	29623224	.	C	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:143,15:30:158:0.095:2	0/1:166,7:30:173:0.040:2	0/1:88,6:29:94:0.064:2	0/1:164,8:30:172:0.047:2	0/1:170,6:30:176:0.034:2	0/1:160,15:29:175:0.086:2	0/1:162,11:30:173:0.064:2	0/1:175,12:29:187:0.064:2	0/1:149,17:30:167:0.102:2	0/1:169,8:28:178:0.045:2	0/1:160,23:29:183:0.126:2
chr20	29623231	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:151,6:31:157:0.038:2	./.	0/1:151,9:32:160:0.056:2	./.	0/1:152,6:32:158:0.038:2	./.	./.
chr20	29623233	.	C	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:163,5:31:168:0.030:2	0/1:167,7:29:174:0.040:2	./.	0/1:168,5:29:173:0.029:2	./.	0/1:138,7:30:145:0.048:2	./.	0/1:186,10:30:196:0.051:2	0/1:151,7:30:158:0.044:2	0/1:167,13:29:180:0.072:2	0/1:178,8:32:186:0.043:2
chr20	29623254	rs371493541	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:138,29:32:167:0.174:2	0/1:136,17:33:153:0.111:2	0/1:70,8:32:78:0.103:2	0/1:152,13:33:165:0.079:2	0/1:93,9:31:102:0.088:2	0/1:121,17:31:138:0.123:2	0/1:99,15:32:114:0.132:2	0/1:160,23:32:183:0.126:2	0/1:124,17:32:141:0.121:2	0/1:154,24:31:178:0.135:2	0/1:159,22:32:181:0.122:2
chr20	29623263	rs373513100	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:136,28:32:164:0.171:2	0/1:128,15:32:143:0.105:2	0/1:63,7:26:70:0.100:2	0/1:154,13:31:167:0.078:2	0/1:88,7:30:95:0.074:2	0/1:121,16:30:137:0.117:2	0/1:100,14:31:114:0.123:2	0/1:160,22:29:182:0.121:2	0/1:119,16:30:137:0.119:2	0/1:149,23:29:172:0.134:2	0/1:162,21:31:183:0.115:2
chr20	29624019	rs10154018	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:163,14:33:177:0.079:2	0/1:170,15:33:185:0.081:2	0/1:34,4:33:38:0.105:2	0/1:170,11:34:181:0.061:2	0/1:179,12:31:191:0.063:2	0/1:168,16:33:184:0.087:2	0/1:174,15:32:189:0.079:2	0/1:176,11:31:187:0.059:2	0/1:171,12:33:183:0.066:2	0/1:179,14:31:193:0.073:2	0/1:165,14:32:179:0.078:2
chr20	29624046	rs10153995	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:138,12:31:150:0.080:2	0/1:126,7:32:133:0.053:2	./.	0/1:129,15:33:144:0.104:2	0/1:161,10:32:171:0.058:2	0/1:136,10:32:146:0.068:2	0/1:165,18:33:183:0.098:2	0/1:157,24:32:181:0.133:2	0/1:169,14:33:183:0.077:2	0/1:146,14:33:160:0.088:2	0/1:147,20:33:167:0.120:2
chr20	29624052	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,11:30:129:0.085:2	./.	./.	0/1:170,6:32:176:0.034:2	./.	0/1:181,4:33:185:0.022:2	./.	./.	./.	./.
chr20	29624054	.	T	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,11:32:129:0.085:2	./.	./.	0/1:172,6:31:178:0.034:2	./.	0/1:184,4:32:188:0.021:2	./.	./.	./.	./.
chr20	29624055	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,11:31:129:0.085:2	./.	./.	0/1:169,6:31:175:0.034:2	./.	./.	./.	./.	./.	./.
chr20	29624068	rs201673567	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:161,8:27:169:0.047:2	./.	./.	./.	./.	./.	0/1:163,10:28:173:0.058:2
chr20	29624070	rs113131305	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:139,26:31:165:0.158:2	0/1:101,8:32:109:0.073:2	0/1:15,9:31:24:0.375:2	0/1:132,24:32:156:0.154:2	./.	0/1:135,27:31:162:0.167:2	0/1:156,23:32:180:0.128:2	0/1:145,38:31:183:0.208:2	0/1:154,31:32:185:0.168:2	0/1:137,23:31:160:0.144:2	0/1:165,7:31:172:0.041:2
chr20	29624081	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:154,6:32:160:0.038:2	./.	./.	./.	./.	./.	0/1:163,10:31:173:0.058:2
chr20	29624093	rs75468660	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:140,20:31:160:0.125:2	0/1:70,13:31:83:0.157:2	0/1:18,3:31:21:0.143:2	0/1:133,22:31:155:0.142:2	0/1:122,23:31:145:0.159:2	0/1:130,25:31:155:0.161:2	0/1:138,13:31:151:0.086:2	0/1:150,21:32:171:0.123:2	0/1:150,28:33:178:0.157:2	0/1:130,22:32:152:0.145:2	0/1:145,22:32:167:0.132:2
chr20	29624097	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:33:168:0.024:2
chr20	29624102	rs6119096	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:144,8:32:152:0.053:2	0/1:64,4:32:68:0.059:2	./.	0/1:141,9:32:150:0.060:2	0/1:127,8:32:135:0.059:2	0/1:138,8:31:146:0.055:2	./.	0/1:158,8:32:166:0.048:2	./.	0/1:137,11:32:148:0.074:2	0/1:154,7:33:161:0.043:2
chr20	29624103	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:33:160:0.025:2
chr20	29625873	rs78003242	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:74,6:32:80:0.075:2	0/1:41,7:32:48:0.146:2	./.	0/1:54,17:33:71:0.239:2	0/1:35,7:32:42:0.167:2	0/1:50,14:32:64:0.219:2	0/1:18,8:33:26:0.308:2	0/1:61,12:33:73:0.164:2	0/1:46,13:33:59:0.220:2	0/1:44,8:32:52:0.154:2	0/1:95,11:32:107:0.104:2
chr20	29625876	rs73611718	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,31:32:81:0.383:2	0/1:31,18:32:49:0.367:2	0/1:6,3:31:9:0.333:2	0/1:28,41:31:69:0.594:2	0/1:30,12:31:42:0.286:2	0/1:30,33:31:63:0.524:2	0/1:14,12:31:26:0.462:2	0/1:48,26:31:74:0.351:2	0/1:27,31:32:58:0.534:2	0/1:25,25:32:50:0.500:2	0/1:53,48:32:101:0.475:2
chr20	29625877	rs7266938	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:30:101:0.040:2
chr20	29625891	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:31:64:0.063:2	./.	./.	./.	./.	0/1:106,4:32:110:0.036:2
chr20	29625895	rs76435412	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:74,7:33:81:0.086:2	./.	./.	0/1:58,9:32:67:0.134:2	./.	0/1:55,6:32:61:0.098:2	./.	0/1:61,10:32:71:0.141:2	./.	0/1:45,6:33:51:0.118:2	0/1:107,8:32:115:0.070:2
chr20	29625935	rs62198354	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:48,22:29:70:0.314:2	0/1:25,9:28:34:0.265:2	./.	0/1:42,17:28:59:0.288:2	0/1:38,22:27:60:0.367:2	0/1:36,16:27:52:0.308:2	0/1:26,18:28:44:0.409:2	0/1:58,15:29:73:0.205:2	0/1:53,11:26:64:0.172:2	0/1:42,17:28:59:0.288:2	0/1:86,32:27:118:0.271:2
chr20	29625947	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,6:33:82:0.073:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,5:28:149:0.034:2
chr20	29625955	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,5:32:96:0.052:2	./.
chr20	29625956	rs147809085	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:75,7:32:82:0.085:2	./.	./.	0/1:81,6:32:87:0.069:2	./.	./.	./.	0/1:94,5:33:99:0.051:2	./.	0/1:90,7:33:97:0.072:2	0/1:152,6:32:158:0.038:2
chr20	29625961	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:32:89:0.045:2	./.	./.	./.	./.	./.
chr20	29625971	rs145033899	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:72,9:32:81:0.111:2	./.	./.	0/1:89,8:32:97:0.082:2	./.	0/1:98,4:32:102:0.039:2	0/1:65,4:31:69:0.058:2	0/1:90,5:32:95:0.053:2	0/1:82,4:31:86:0.047:2	0/1:92,7:33:99:0.071:2	0/1:158,9:30:167:0.054:2
chr20	29625985	rs79368216	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:30:103:0.039:2	./.	./.	./.	./.	0/1:156,4:32:160:0.025:2
chr20	29628225	.	A	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:169,8:33:177:0.045:2	0/1:176,5:31:181:0.028:2	0/1:118,7:33:125:0.056:2	0/1:172,6:35:178:0.034:2	0/1:173,7:32:180:0.039:2	0/1:165,9:33:174:0.052:2	0/1:173,12:32:185:0.065:2	./.	./.	0/1:176,5:33:181:0.028:2	0/1:167,6:35:173:0.035:2
chr20	29628226	rs78710112	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:153,19:32:172:0.110:2	0/1:157,15:34:172:0.087:2	0/1:111,6:31:117:0.051:2	0/1:150,19:34:169:0.112:2	0/1:148,21:32:169:0.124:2	0/1:160,15:32:175:0.086:2	0/1:172,7:29:179:0.039:2	0/1:157,15:33:172:0.087:2	0/1:160,8:34:168:0.048:2	0/1:166,11:33:177:0.062:2	0/1:158,12:34:170:0.071:2
chr20	29628229	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:124,5:31:129:0.039:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	29628233	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:179,4:32:183:0.022:2	./.	./.	./.	0/1:175,4:36:179:0.022:2	./.	./.
chr20	29628236	.	G	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:123,7:32:130:0.054:2	./.	0/1:174,6:32:180:0.033:2	0/1:166,8:33:175:0.046:2	./.	./.	./.	0/1:173,9:34:182:0.049:2	0/1:164,7:32:172:0.041:2
chr20	29628237	rs142752776	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:156,21:33:177:0.119:2	0/1:164,20:32:184:0.109:2	0/1:105,24:31:129:0.186:2	0/1:162,16:32:178:0.090:2	0/1:162,18:31:180:0.100:2	0/1:152,23:32:175:0.131:2	0/1:157,28:32:186:0.151:2	0/1:157,29:32:186:0.156:2	0/1:136,41:33:177:0.232:2	0/1:146,33:32:179:0.184:2	0/1:155,17:32:172:0.099:2
chr20	29628246	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,8:32:172:0.047:2	./.	./.	./.	./.	./.
chr20	29628251	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:166,14:32:180:0.078:2	0/1:172,8:33:180:0.044:2	0/1:120,13:33:133:0.098:2	0/1:163,13:33:176:0.074:2	0/1:164,11:32:175:0.063:2	0/1:160,10:32:172:0.059:2	0/1:177,9:33:186:0.048:2	0/1:171,11:33:182:0.060:2	0/1:166,10:36:176:0.057:2	0/1:165,15:33:180:0.083:2	0/1:162,10:34:172:0.058:2
chr20	29628261	rs111331725	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:167,11:34:178:0.062:2	0/1:168,12:32:180:0.067:2	./.	./.	0/1:175,8:34:183:0.044:2	0/1:162,10:35:172:0.058:2	0/1:166,14:31:180:0.078:2	0/1:164,13:34:177:0.073:2
chr20	29628263	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:174,5:33:179:0.028:2	./.	./.	./.	0/1:175,6:31:181:0.033:2	./.	./.	0/1:172,5:34:178:0.028:2
chr20	29628271	rs62199576	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,95:31:165:0.576:2	0/1:72,105:31:177:0.593:2	0/1:44,63:30:107:0.589:2	0/1:63,109:30:172:0.634:2	0/1:81,85:30:166:0.512:2	0/1:66,102:30:168:0.607:2	0/1:78,74:30:152:0.487:2	0/1:68,113:31:181:0.624:2	0/1:85,86:31:171:0.503:2	0/1:82,95:30:177:0.537:2	0/1:76,98:31:174:0.563:2
chr20	29628283	rs200164543	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:170,9:28:179:0.050:2	0/1:168,6:27:175:0.034:2	0/1:79,8:29:87:0.092:2	./.	./.	0/1:168,7:30:175:0.040:2	0/1:137,7:30:144:0.049:2	0/1:176,5:31:182:0.028:2	./.	0/1:171,7:26:178:0.039:2	./.
chr20	29628288	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:33:135:0.030:2	./.	./.	./.	./.
chr20	29628300	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:162,8:32:170:0.047:2	0/1:150,5:32:155:0.032:2	0/1:56,4:32:60:0.067:2	./.	0/1:142,10:31:152:0.066:2	./.	./.	./.	./.	0/1:159,6:31:166:0.036:2	./.
chr20	29628328	.	C	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:139,18:33:157:0.115:2	0/1:130,19:31:149:0.128:2	0/1:25,5:33:30:0.167:2	0/1:127,10:31:137:0.073:2	0/1:112,28:31:140:0.200:2	0/1:141,15:33:156:0.096:2	0/1:89,8:32:97:0.082:2	0/1:103,13:32:116:0.112:2	0/1:93,17:32:110:0.155:2	0/1:121,23:32:144:0.160:2	0/1:119,25:33:144:0.174:2
chr20	29628332	rs374205920	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:33:149:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	29631557	rs11525721	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,5:29:194:0.026:2	./.	./.	0/1:125,4:34:129:0.031:2	./.	./.	./.	./.
chr20	29631562	rs75398190	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,9:33:199:0.045:2	./.	./.	./.	./.	./.
chr20	29631566	.	A	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,7:31:193:0.036:2	./.	0/1:186,5:32:191:0.026:2	./.	0/1:180,8:31:188:0.043:2	0/1:183,5:32:188:0.027:2
chr20	29631584	rs143891680	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:185,8:33:193:0.041:2	0/1:186,8:32:194:0.041:2	./.	0/1:177,11:32:188:0.059:2	0/1:189,6:31:195:0.031:2	0/1:180,12:32:192:0.063:2	0/1:189,6:32:195:0.031:2	./.	./.	0/1:178,11:31:189:0.058:2	0/1:176,9:33:185:0.049:2
chr20	29631606	.	A	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:176,16:31:192:0.083:2	0/1:175,19:32:194:0.098:2	0/1:80,19:32:99:0.192:2	0/1:171,18:34:189:0.095:2	./.	0/1:187,9:31:196:0.046:2	0/1:183,9:33:192:0.047:2	0/1:182,14:33:196:0.071:2	0/1:176,14:34:190:0.074:2	0/1:175,17:33:192:0.089:2	0/1:179,8:32:189:0.043:2
chr20	29631613	rs199635479	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:177,15:31:192:0.078:2	0/1:180,13:31:193:0.067:2	0/1:91,11:31:102:0.108:2	0/1:177,14:32:192:0.073:2	0/1:181,5:32:186:0.027:2	0/1:177,18:31:195:0.092:2	0/1:171,16:31:187:0.086:2	0/1:178,15:32:193:0.078:2	0/1:176,11:32:187:0.059:2	0/1:175,16:32:191:0.084:2	0/1:167,23:33:190:0.121:2
chr20	29631614	rs200793872	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:175,16:32:191:0.084:2	0/1:177,16:32:193:0.083:2	0/1:87,15:31:102:0.147:2	0/1:175,17:32:192:0.089:2	0/1:183,5:31:188:0.027:2	0/1:172,23:31:195:0.118:2	0/1:171,15:32:186:0.081:2	0/1:178,17:32:195:0.087:2	0/1:171,16:30:187:0.086:2	0/1:169,22:31:191:0.115:2	0/1:163,27:32:190:0.142:2
chr20	29632632	rs73598387	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:166,15:33:181:0.083:2	0/1:150,5:33:155:0.032:2	0/1:33,5:31:38:0.132:2	0/1:173,11:32:184:0.060:2	./.	0/1:171,12:33:183:0.066:2	0/1:143,4:33:147:0.027:2	0/1:176,10:32:186:0.054:2	./.	0/1:173,11:32:184:0.060:2	0/1:156,19:34:175:0.109:2
chr20	29632634	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,6:32:182:0.033:2	0/1:143,4:32:147:0.027:2	./.	./.	./.	./.
chr20	29632638	rs9647043	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:125,50:33:175:0.286:2	0/1:116,37:33:153:0.242:2	0/1:32,7:29:39:0.179:2	0/1:141,34:32:175:0.194:2	0/1:115,62:31:177:0.350:2	0/1:137,41:31:178:0.230:2	0/1:101,49:32:150:0.327:2	0/1:146,39:32:185:0.211:2	0/1:116,61:33:177:0.345:2	0/1:133,43:33:176:0.244:2	0/1:133,36:33:169:0.213:2
chr20	29632641	rs6087298	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:171,5:34:176:0.028:2	0/1:150,5:33:156:0.032:2	./.	0/1:170,4:34:174:0.023:2	0/1:169,9:33:178:0.051:2	0/1:170,7:32:177:0.040:2	0/1:144,9:30:153:0.059:2	0/1:183,4:33:187:0.021:2	./.	0/1:169,9:30:178:0.051:2	0/1:154,15:34:169:0.089:2
chr20	29632643	rs143379667	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:160,19:33:179:0.106:2	0/1:132,22:31:154:0.143:2	0/1:36,4:33:40:0.100:2	0/1:151,26:33:177:0.147:2	0/1:156,23:32:179:0.128:2	0/1:159,19:32:178:0.107:2	0/1:130,20:31:150:0.133:2	0/1:165,22:33:187:0.118:2	0/1:165,15:32:180:0.083:2	0/1:156,16:33:172:0.093:2	0/1:148,21:31:169:0.124:2
chr20	29632673	rs73598388	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:33:162:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	29632680	rs4892355	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:158,6:32:164:0.037:2	0/1:152,7:34:159:0.044:2	./.	0/1:179,5:33:184:0.027:2	./.	0/1:166,13:32:179:0.073:2	0/1:153,15:32:168:0.089:2	0/1:168,11:32:179:0.061:2	./.	0/1:166,9:32:175:0.051:2	0/1:166,6:32:172:0.035:2
chr20	29632707	rs6057187	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:155,7:32:162:0.043:2	0/1:144,8:29:153:0.053:2	./.	./.	0/1:167,5:30:172:0.029:2	0/1:167,8:30:175:0.046:2	./.	./.	0/1:159,9:30:168:0.054:2	0/1:155,9:30:166:0.055:2	0/1:162,6:30:168:0.036:2
chr20	29632709	rs78816635	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:143,15:32:158:0.095:2	0/1:140,9:31:149:0.060:2	0/1:36,3:32:39:0.077:2	0/1:159,16:31:175:0.091:2	0/1:156,11:31:167:0.066:2	0/1:156,20:31:176:0.114:2	0/1:156,10:32:166:0.060:2	0/1:158,16:32:174:0.092:2	0/1:160,9:32:169:0.053:2	0/1:154,10:33:164:0.061:2	0/1:157,8:30:165:0.048:2
chr20	29632714	rs76788819	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:145,15:32:160:0.094:2	0/1:139,7:32:146:0.048:2	./.	0/1:155,12:32:167:0.072:2	0/1:148,8:31:156:0.051:2	0/1:157,19:29:176:0.108:2	0/1:153,9:30:162:0.056:2	0/1:158,11:31:169:0.065:2	0/1:161,8:30:169:0.047:2	0/1:154,9:32:163:0.055:2	0/1:162,6:32:168:0.036:2
chr20	29632715	rs74765991	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:144,15:32:159:0.094:2	0/1:140,7:32:147:0.048:2	./.	0/1:156,12:31:168:0.071:2	0/1:146,8:32:154:0.052:2	0/1:161,18:31:179:0.101:2	0/1:154,9:33:163:0.055:2	0/1:158,11:32:169:0.065:2	0/1:161,8:29:169:0.047:2	0/1:154,9:33:163:0.055:2	0/1:162,6:32:169:0.036:2
chr20	29633854	rs77178122	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:158,5:32:164:0.031:2	./.	./.	./.	./.	0/1:140,6:32:146:0.041:2	0/1:78,4:30:84:0.049:2	./.	./.	0/1:176,6:31:183:0.033:2	./.
chr20	29633861	rs80250025	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:146,18:33:164:0.110:2	0/1:104,10:32:114:0.088:2	0/1:33,3:32:36:0.083:2	0/1:161,13:33:174:0.075:2	0/1:87,7:31:94:0.074:2	0/1:148,15:32:163:0.092:2	0/1:86,8:32:94:0.085:2	0/1:160,17:32:177:0.096:2	0/1:157,21:33:178:0.118:2	0/1:157,24:33:181:0.133:2	0/1:162,7:33:169:0.041:2
chr20	29633875	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,5:31:169:0.030:2	./.	0/1:166,5:30:171:0.029:2	./.	./.	./.
chr20	29633887	rs2313264	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:131,23:31:154:0.149:2	0/1:121,19:31:140:0.136:2	0/1:23,9:30:32:0.281:2	0/1:129,26:30:155:0.168:2	0/1:77,30:30:107:0.280:2	0/1:128,30:30:158:0.190:2	0/1:89,13:30:102:0.127:2	0/1:141,23:30:165:0.140:2	0/1:147,16:32:163:0.098:2	0/1:136,19:30:155:0.123:2	0/1:114,32:32:146:0.219:2
chr20	29633894	rs76245589	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:144,12:33:156:0.077:2	0/1:133,19:32:152:0.125:2	./.	0/1:144,15:31:159:0.094:2	0/1:115,9:31:124:0.073:2	0/1:142,13:30:155:0.084:2	0/1:97,8:32:105:0.076:2	0/1:155,7:32:162:0.043:2	0/1:150,16:32:166:0.096:2	0/1:141,16:32:157:0.102:2	0/1:133,12:31:145:0.083:2
chr20	29633900	rs60081496	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:140,6:33:146:0.041:2	0/1:147,9:32:156:0.058:2	0/1:31,4:30:35:0.114:2	0/1:152,4:32:156:0.026:2	./.	./.	./.	./.	0/1:150,4:33:154:0.026:2	./.	./.
chr20	29633902	rs145072022	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:134,11:33:145:0.076:2	0/1:146,9:32:155:0.058:2	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:33:143:0.028:2	./.
chr20	29633915	rs78740969	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:109,14:33:123:0.114:2	0/1:131,10:33:141:0.071:2	0/1:28,5:32:33:0.152:2	0/1:122,16:31:138:0.116:2	0/1:114,12:32:126:0.095:2	0/1:122,10:32:132:0.076:2	0/1:89,5:32:94:0.053:2	0/1:121,15:33:136:0.110:2	0/1:123,16:34:139:0.115:2	0/1:106,17:34:123:0.138:2	0/1:117,7:26:124:0.056:2
chr20	29633927	rs62196372	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:88,11:32:99:0.111:2	0/1:116,10:30:126:0.079:2	./.	0/1:108,8:30:116:0.069:2	0/1:111,8:27:119:0.067:2	0/1:104,12:31:116:0.103:2	0/1:72,5:30:77:0.065:2	0/1:106,10:31:116:0.086:2	0/1:97,7:31:104:0.067:2	0/1:92,5:30:97:0.052:2	0/1:115,5:30:120:0.042:2
chr20	29633929	rs7509092	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,12:32:99:0.121:2	0/1:113,12:32:125:0.096:2	0/1:23,3:33:26:0.115:2	0/1:106,8:31:114:0.070:2	0/1:112,9:30:121:0.074:2	0/1:102,14:31:116:0.121:2	0/1:73,5:32:78:0.064:2	0/1:103,11:33:114:0.096:2	0/1:91,9:33:100:0.090:2	0/1:91,6:31:97:0.062:2	0/1:115,5:32:120:0.042:2
chr20	29633938	rs61041024	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:72,21:31:93:0.226:2	0/1:93,23:32:116:0.198:2	0/1:19,7:33:26:0.269:2	0/1:84,25:32:109:0.229:2	0/1:93,20:32:113:0.177:2	0/1:90,16:31:106:0.151:2	0/1:63,11:34:74:0.149:2	0/1:88,16:31:104:0.154:2	0/1:81,15:33:96:0.156:2	0/1:77,21:32:98:0.214:2	0/1:103,23:31:126:0.183:2
chr20	29633945	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:94,4:31:99:0.041:2	0/1:105,10:31:115:0.087:2	./.	0/1:105,4:30:110:0.037:2	0/1:108,5:31:115:0.044:2	0/1:95,8:30:103:0.078:2	./.	./.	0/1:96,4:30:100:0.040:2	0/1:90,10:31:101:0.100:2	0/1:116,9:30:127:0.072:2
chr20	29633952	rs62196374	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:86,12:33:98:0.122:2	0/1:104,7:31:111:0.063:2	./.	0/1:97,9:32:106:0.085:2	./.	0/1:87,9:32:96:0.094:2	0/1:67,3:34:70:0.043:2	0/1:99,5:33:107:0.048:2	0/1:101,6:33:107:0.056:2	0/1:87,10:30:97:0.103:2	0/1:120,9:30:129:0.070:2
chr20	29891242	rs117663474	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,30:31:65:0.462:2	./.	./.	./.	./.	./.	./.	./.
chr20	29978212	rs73108009	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,15:32:38:0.405:2	./.	0/1:24,21:31:45:0.467:2	./.	./.	./.	./.
chr20	29978216	rs2206381	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,37:32:37:1.00:2	0/1:0,22:33:22:1.00:2	./.	0/1:0,50:33:50:1.00:2	0/1:0,38:32:38:1.00:2	0/1:23,33:32:56:0.589:2	0/1:0,46:33:46:1.00:2	0/1:0,62:32:62:1.00:2	0/1:36,23:35:59:0.390:2	0/1:0,41:33:41:1.00:2	0/1:22,21:32:43:0.488:2
chr20	30064331	rs1006459	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,6:29:25:0.240:2	0/1:6,6:28:12:0.500:2	./.	0/1:21,7:31:28:0.250:2	0/1:18,16:28:34:0.471:2	0/1:16,22:27:38:0.579:2	./.	0/1:23,17:29:40:0.425:2	./.	./.	./.
chr20	30070239	rs2233832	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,40:28:82:0.488:2	./.	./.	0/1:41,25:29:66:0.379:2	./.	./.
chr20	30154047	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:32:76:0.053:2	./.	./.	./.	./.	./.
chr20	30193377	rs1802548	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,47:32:96:0.490:2	./.	./.	./.
chr20	30193440	rs142440693	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,46:32:126:0.365:2	./.
chr20	30193538	rs15817	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:38,21:27:59:0.356:2	0/1:24,14:31:38:0.368:2	./.	0/1:34,35:28:69:0.507:2	./.	./.	./.	0/1:56,16:27:72:0.222:2	./.	./.	./.
chr20	30193726	rs146555264	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,39:31:75:0.520:2	./.	./.	./.	./.	./.	./.	./.
chr20	30193993	rs148925564	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,15:30:28:0.536:2	./.	./.
chr20	30194070	rs184161698	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,20:31:39:0.513:2	0/1:8,7:31:15:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	30194248	rs2811	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:9,8:33:17:0.471:2	0/1:10,4:33:14:0.286:2	./.	0/1:12,5:32:17:0.294:2	./.	./.	./.	0/1:14,6:32:20:0.300:2	./.	./.	./.
chr20	30194251	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,4:29:15:0.267:2	./.	./.
chr20	30226869	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.	./.	./.	./.
chr20	30309596	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,25:31:63:0.397:2	./.	./.	./.	./.	./.	./.	./.
chr20	30354417	rs13044019	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,22:31:59:0.373:2	./.	0/1:31,16:32:47:0.340:2	./.
chr20	30381758	rs1062794	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:55,35:34:90:0.389:2	0/1:23,26:31:49:0.531:2	./.	0/1:53,56:32:109:0.514:2	./.	0/1:62,60:32:122:0.492:2	./.	0/1:69,40:32:109:0.367:2	./.	./.	./.
chr20	30382315	rs3203770	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:36,38:33:74:0.514:2	0/1:30,18:32:48:0.375:2	./.	0/1:38,30:32:68:0.441:2	./.	0/1:35,19:32:54:0.352:2	./.	0/1:60,28:33:88:0.318:2	./.	./.	./.
chr20	30408306	rs34396614	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,5:33:5:1.00:2	./.	./.	./.	./.	./.	0/1:1,3:32:4:0.750:2
chr20	30409426	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,9:32:13:0.692:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	30414603	rs188352991	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,78:31:162:0.481:2	./.	./.	./.	./.
chr20	30414621	rs6089088	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,92:31:197:0.467:2	./.	./.	./.	./.
chr20	30418891	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:31:169:0.024:2	./.	./.	./.	./.	./.
chr20	30433139	rs6089096	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,77:30:82:0.939:2	0/1:50,42:30:92:0.457:2	./.	0/1:39,39:30:78:0.500:2	./.
chr20	30433352	rs6121246	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:5,6:32:11:0.545:2	0/1:7,9:32:16:0.563:2	./.	0/1:12,11:28:23:0.478:2	./.	0/1:6,18:30:24:0.750:2	./.	0/1:2,11:32:13:0.846:2	./.	./.	./.
chr20	30436652	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:154,4:32:158:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr20	30438475	rs200973563	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,5:28:158:0.032:2
chr20	30452782	rs4911536	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:55,45:33:100:0.450:2	0/1:28,20:32:48:0.417:2	./.	./.	./.	./.	0/1:77,76:33:153:0.497:2	0/1:70,60:32:130:0.462:2	./.	0/1:47,43:33:90:0.478:2	./.
chr20	30496398	rs184016363	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,11:30:35:0.314:2	./.	./.	./.	./.	./.	./.	./.
chr20	30510804	rs41293120	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,42:32:87:0.483:2	./.	./.	./.	./.	./.
chr20	30513702	rs61745444	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,39:30:105:0.371:2	./.	./.	./.	./.
chr20	30513735	rs4911195	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:48,36:31:85:0.429:2	0/1:34,28:30:62:0.452:2	./.	./.	./.	./.	./.	0/1:191,4:32:195:0.021:2	./.	0/1:71,61:30:134:0.462:2	./.
chr20	30527065	rs6061043	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:18,7:33:25:0.280:2	0/1:11,6:31:17:0.353:2	./.	./.	0/1:21,13:32:34:0.382:2	./.	0/1:28,13:32:41:0.317:2	./.	./.	./.	./.
chr20	30602775	rs112249840	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,28:30:57:0.500:2	./.	./.	./.	0/1:12,11:29:23:0.478:2	./.	./.
chr20	30616835	rs6089151	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,7:32:23:0.304:2	./.	0/1:104,77:32:181:0.425:2	./.	./.	./.	0/1:66,74:33:140:0.529:2	./.	./.
chr20	30742996	rs1205843	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:30:11:0.727:2	./.	./.	./.	./.	./.	./.	./.	0/1:48,54:28:102:0.529:2
chr20	30746248	rs6061195	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:106,69:29:175:0.394:2	0/1:83,68:29:151:0.450:2	0/1:20,20:30:40:0.500:2	./.	0/1:106,64:31:170:0.376:2	0/1:107,66:30:173:0.382:2	0/1:100,72:30:172:0.419:2	0/1:105,61:29:166:0.367:2	./.	0/1:104,71:30:175:0.406:2	./.
chr20	30784900	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:33:92:0.043:2	./.
chr20	30784966	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:32:55:0.073:2	./.
chr20	30795819	rs1923095	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,7:28:20:0.350:2	0/1:6,6:31:12:0.500:2	./.	./.	0/1:5,9:30:14:0.643:2	0/1:19,7:30:26:0.269:2	0/1:20,5:32:25:0.200:2	0/1:8,13:30:21:0.619:2	./.	0/1:4,9:31:13:0.692:2	./.
chr20	30818822	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,82:33:181:0.453:2	./.	./.	./.
chr20	30818850	rs17268666	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,63:32:140:0.450:2	./.	0/1:63,72:31:135:0.533:2	0/1:83,53:32:136:0.390:2	0/1:64,74:32:138:0.536:2	./.	./.	./.
chr20	30897671	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:166,4:32:170:0.024:2	./.	./.	./.	./.	./.	./.
chr20	30897762	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:128:0.031:2	./.	./.	./.	./.
chr20	30915461	rs1129012	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,5:33:16:0.313:2	./.	./.	./.	0/1:27,17:33:46:0.386:2	0/1:28,41:33:69:0.594:2	./.	./.	./.
chr20	30956920	rs140562623	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:33:150:0.027:2	./.	./.	./.	./.
chr20	31022693	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:31:129:0.031:2	./.	./.	./.	./.	./.
chr20	31022851	rs41289850	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,89:32:198:0.449:2	./.	./.	./.	./.	./.	./.
chr20	31022959	rs6058694	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,134:29:134:1.00:2	0/1:0,72:29:72:1.00:2	0/1:1,15:31:16:0.938:2	0/1:1,151:30:152:0.993:2	0/1:0,134:29:134:1.00:2	0/1:0,140:29:140:1.00:2	0/1:0,154:29:154:1.00:2	0/1:0,149:29:149:1.00:2	0/1:0,146:31:146:1.00:2	0/1:0,106:30:106:1.00:2	0/1:0,141:29:141:1.00:2
chr20	31023998	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:34:85:0.047:2
chr20	31024260	rs146141075	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,8:32:21:0.381:2	0/1:12,4:33:16:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	31024274	rs4911231	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,7:31:20:0.350:2	0/1:9,4:33:13:0.308:2	./.	./.	0/1:24,9:31:33:0.273:2	0/1:11,15:31:26:0.577:2	./.	./.	./.	0/1:5,10:31:15:0.667:2	./.
chr20	31024613	rs143041800	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,12:30:32:0.375:2	./.	./.	./.	./.	./.	./.	./.
chr20	31040783	rs41310799	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:32:11:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	31044146	rs150591065	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,48:28:133:0.364:2	./.	./.	./.	./.
chr20	31097664	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:33:117:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	31196471	rs8114375	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	0/1:0,10:29:10:1.00:2	0/1:3,5:30:8:0.625:2	0/1:1,5:30:6:0.833:2	0/1:8,5:31:13:0.385:2	0/1:5,3:29:8:0.375:2	./.	./.
chr20	31238627	rs7272020	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:1,9:32:10:0.900:2	0/1:2,10:31:12:0.833:2	0/1:12,7:30:19:0.368:2	./.	0/1:1,8:33:9:0.889:2	0/1:5,5:33:10:0.500:2	./.	./.
chr20	31384624	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,10:16:112:0.089:2	./.	0/1:80,9:18:89:0.101:2
chr20	31386347	rs6058891	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:33:11:0.364:2	./.	0/1:39,32:32:71:0.451:2	./.	./.	0/1:0,68:31:68:1.00:2	./.	0/1:0,44:32:44:1.00:2	0/1:25,23:32:48:0.479:2
chr20	31386449	rs2424922	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,15:28:36:0.417:2	./.	./.	0/1:0,23:30:23:1.00:2	./.	0/1:0,21:29:21:1.00:2	0/1:16,5:29:21:0.238:2
chr20	31388080	rs17123657	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,55:32:129:0.426:2	./.	./.	./.
chr20	31388636	rs2424928	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:34:10:0.300:2	./.	0/1:48,43:32:91:0.473:2	./.	0/1:103,4:32:107:0.037:2	0/1:1,105:33:106:0.991:2	./.	0/1:0,82:33:82:1.00:2	0/1:57,41:33:98:0.418:2
chr20	31427635	rs2070090	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,5:32:12:0.417:2	./.	./.	./.	./.	0/1:68,96:31:164:0.585:2	./.	./.	0/1:33,29:31:62:0.468:2
chr20	31466534	rs13037496	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,42:31:98:0.429:2	0/1:25,31:30:56:0.554:2	0/1:12,9:31:21:0.429:2	0/1:1,101:31:103:0.990:2	0/1:105,60:31:165:0.364:2	0/1:3,157:31:160:0.981:2	0/1:4,133:32:137:0.971:2	./.	0/1:0,116:32:116:1.00:2	./.	./.
chr20	31481077	rs73904069	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,46:32:106:0.434:2	./.	./.	./.
chr20	31494382	rs6120033	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,32:32:75:0.427:2	0/1:22,23:32:45:0.511:2	0/1:0,9:32:9:1.00:2	0/1:0,70:31:70:1.00:2	0/1:42,28:30:70:0.400:2	0/1:0,66:31:66:1.00:2	0/1:2,61:31:63:0.968:2	0/1:61,33:32:94:0.351:2	0/1:1,103:32:104:0.990:2	0/1:55,24:31:79:0.304:2	0/1:58,38:32:96:0.396:2
chr20	31497682	rs78951406	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,29:32:50:0.580:2	./.	./.	./.
chr20	31505189	rs13043425	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,8:33:17:0.471:2	0/1:69,61:32:130:0.469:2	./.	./.	./.	./.	0/1:74,43:33:117:0.368:2	./.	./.
chr20	31505292	rs13037781	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,29:32:69:0.420:2	0/1:17,19:32:36:0.528:2	0/1:0,13:32:13:1.00:2	0/1:0,66:32:66:1.00:2	0/1:41,30:31:71:0.423:2	0/1:0,54:31:54:1.00:2	0/1:0,75:32:75:1.00:2	0/1:47,51:32:98:0.520:2	0/1:0,77:33:77:1.00:2	0/1:25,29:32:54:0.537:2	0/1:25,25:32:50:0.500:2
chr20	31518229	rs117765537	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,22:31:46:0.478:2	./.	./.	0/1:26,13:30:39:0.333:2	./.	./.	./.
chr20	31518298	rs6058961	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:33:7:0.429:2	0/1:31,18:31:49:0.367:2	./.	./.	./.	./.	0/1:1,68:33:69:0.986:2	0/1:25,24:33:49:0.490:2	./.
chr20	31531544	rs13045180	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:51,58:31:109:0.532:2	0/1:32,32:31:64:0.500:2	./.	0/1:68,58:29:126:0.460:2	./.	0/1:77,57:30:134:0.425:2	0/1:61,55:31:116:0.474:2	./.	./.	./.	./.
chr20	31548987	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.	./.
chr20	31549044	rs76404073	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:30:9:0.556:2	./.	./.	./.	./.	./.	./.	./.	0/1:38,30:30:68:0.441:2
chr20	31584178	rs6141862	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:43,26:31:69:0.377:2	0/1:17,11:32:28:0.393:2	./.	./.	0/1:23,12:30:35:0.343:2	./.	./.	0/1:36,29:31:65:0.446:2	./.	0/1:28,19:31:47:0.404:2	0/1:51,34:32:85:0.400:2
chr20	31585432	rs41312288	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,22:29:40:0.550:2	0/1:21,13:30:34:0.382:2	0/1:34,22:30:56:0.393:2	./.	./.	./.	0/1:31,19:31:50:0.380:2
chr20	31585508	rs41301833	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,9:29:20:0.450:2	./.	./.
chr20	31587752	rs414191	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:65,46:32:111:0.414:2	0/1:46,41:32:87:0.471:2	./.	./.	0/1:58,55:32:113:0.487:2	./.	./.	0/1:87,63:32:150:0.420:2	./.	0/1:82,46:32:128:0.359:2	0/1:67,78:32:145:0.538:2
chr20	31587793	rs15850	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:80,55:29:135:0.407:2	0/1:45,32:29:77:0.416:2	0/1:13,10:29:23:0.435:2	./.	0/1:0,144:29:144:1.00:2	0/1:84,67:30:151:0.444:2	0/1:111,79:29:190:0.416:2	0/1:111,78:29:189:0.413:2	./.	0/1:91,58:29:149:0.389:2	0/1:0,130:29:130:1.00:2
chr20	31590388	rs149206379	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,18:31:40:0.450:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	31590686	rs1133358	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,5:30:8:0.625:2	0/1:58,75:31:133:0.564:2	./.	./.	./.	./.	./.	0/1:48,28:32:76:0.368:2	0/1:56,53:31:109:0.486:2
chr20	31590745	rs6059011	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,22:31:48:0.458:2	0/1:45,38:33:83:0.458:2	0/1:35,35:33:70:0.500:2	./.	./.	./.	./.
chr20	31596472	rs6088066	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,3:31:11:0.273:2	0/1:37,39:31:76:0.513:2	./.	./.	./.	0/1:57,47:31:104:0.452:2	0/1:0,89:32:89:1.00:2	./.	./.
chr20	31607551	rs61734341	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,18:33:29:0.621:2
chr20	31609581	rs17124003	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,3:32:9:0.333:2	0/1:78,45:31:124:0.366:2	0/1:63,46:31:109:0.422:2	0/1:54,57:31:111:0.514:2	0/1:77,51:31:128:0.398:2	./.	./.	0/1:67,41:32:108:0.380:2	0/1:55,53:32:108:0.491:2
chr20	31619500	rs17301126	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,105:31:105:1.00:2	./.	./.	./.	0/1:27,31:32:58:0.534:2
chr20	31622083	rs2070317	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,34:32:68:0.500:2	0/1:20,18:32:38:0.474:2	0/1:6,3:32:9:0.333:2	0/1:55,44:31:99:0.444:2	0/1:0,123:30:123:1.00:2	./.	0/1:0,119:31:119:1.00:2	0/1:60,61:31:121:0.504:2	0/1:31,38:32:69:0.551:2	0/1:30,34:32:64:0.531:2	0/1:2,65:32:67:0.970:2
chr20	31624300	rs17373408	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,142:32:144:0.986:2	./.	./.	./.	0/1:50,47:31:97:0.485:2
chr20	31627291	rs4911287	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,26:31:51:0.510:2	0/1:18,19:31:37:0.514:2	0/1:2,3:34:5:0.600:2	0/1:34,34:33:68:0.500:2	0/1:0,59:32:59:1.00:2	./.	./.	0/1:41,36:32:77:0.468:2	0/1:42,18:31:60:0.300:2	0/1:33,24:31:57:0.421:2	0/1:39,29:31:68:0.426:2
chr20	31652292	rs4911290	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:48,29:32:77:0.377:2	0/1:22,30:31:52:0.577:2	./.	0/1:53,24:32:78:0.312:2	0/1:1,57:31:58:0.983:2	./.	./.	0/1:71,48:32:119:0.403:2	0/1:61,56:32:117:0.479:2	0/1:56,28:31:84:0.333:2	0/1:58,45:32:103:0.437:2
chr20	31652315	rs117989719	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,26:32:82:0.317:2	./.	./.	./.	./.	./.	./.	./.
chr20	31652596	rs2093066	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	0/1:1,48:32:49:0.980:2	./.	./.	./.	0/1:18,15:32:33:0.455:2
chr20	31656632	rs6057717	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,11:33:31:0.355:2	0/1:7,7:32:14:0.500:2	./.	0/1:22,33:32:55:0.600:2	0/1:1,36:32:37:0.973:2	./.	./.	0/1:28,36:32:64:0.563:2	0/1:20,14:33:34:0.412:2	0/1:20,19:31:39:0.487:2	0/1:17,36:33:53:0.679:2
chr20	31659984	rs201985928	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:123,29:14:152:0.191:2	0/1:123,19:12:142:0.134:2	0/1:38,7:16:45:0.156:2	0/1:138,27:15:165:0.164:2	0/1:145,31:14:176:0.176:2	0/1:144,30:17:174:0.172:2	0/1:141,22:16:164:0.135:2	0/1:133,37:16:170:0.218:2	0/1:156,21:13:178:0.119:2	0/1:113,25:15:138:0.181:2	0/1:124,18:15:142:0.127:2
chr20	31660543	rs378098	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,12:31:25:0.480:2	./.	./.	./.	0/1:1,162:32:163:0.994:2	./.	./.	./.	0/1:81,97:32:178:0.545:2
chr20	31671209	rs13036385	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,21:33:50:0.420:2	./.	0/1:0,33:31:33:1.00:2	./.	0/1:24,20:31:44:0.455:2	0/1:26,18:33:44:0.409:2	./.	./.
chr20	31671599	rs4339026	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,15:32:27:0.556:2	./.	0/1:2,34:31:36:0.944:2	./.	0/1:22,19:30:41:0.463:2	0/1:15,18:33:33:0.545:2	./.	./.
chr20	31671619	rs2424943	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,39:31:39:1.00:2	./.	./.	./.	0/1:21,15:32:36:0.417:2
chr20	31671628	rs2424944	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,38:31:38:1.00:2	./.	./.	./.	0/1:20,15:30:35:0.429:2
chr20	31671663	rs2424945	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:32:3:0.667:2	0/1:12,12:29:24:0.500:2	./.	0/1:0,16:27:16:1.00:2	0/1:0,21:27:21:1.00:2	0/1:16,7:27:23:0.304:2	0/1:8,7:31:16:0.467:2	./.	0/1:12,11:26:23:0.478:2
chr20	31673846	rs2070325	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,22:29:53:0.415:2	0/1:18,18:27:36:0.500:2	0/1:12,6:30:18:0.333:2	0/1:34,36:28:70:0.514:2	0/1:0,96:28:96:1.00:2	./.	./.	0/1:70,42:29:112:0.375:2	0/1:40,49:29:89:0.551:2	0/1:28,26:29:54:0.481:2	0/1:38,38:29:76:0.500:2
chr20	31676804	rs2889732	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,39:32:90:0.433:2	0/1:26,17:30:43:0.395:2	0/1:7,4:33:11:0.364:2	0/1:63,55:32:118:0.466:2	0/1:0,119:32:119:1.00:2	./.	./.	0/1:0,119:31:119:1.00:2	0/1:54,51:32:105:0.486:2	0/1:58,29:32:87:0.333:2	0/1:48,30:31:78:0.385:2
chr20	31678534	rs2070326	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,48:32:111:0.432:2	./.	0/1:1,104:32:105:0.990:2	./.	0/1:71,51:32:122:0.418:2	0/1:46,58:34:104:0.558:2	./.	./.
chr20	31688241	rs11699009	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,17:31:38:0.447:2	0/1:16,13:32:29:0.448:2	0/1:5,3:33:8:0.375:2	0/1:32,20:32:53:0.385:2	./.	0/1:1,55:32:56:0.982:2	0/1:1,65:32:66:0.985:2	./.	0/1:40,21:33:61:0.344:2	0/1:41,28:32:69:0.406:2	0/1:32,19:32:51:0.373:2
chr20	31688260	rs11696307	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:21,17:30:38:0.447:2	0/1:15,16:32:31:0.516:2	./.	0/1:32,28:30:60:0.467:2	./.	0/1:1,55:30:56:0.982:2	0/1:1,65:31:66:0.985:2	./.	0/1:38,28:32:66:0.424:2	0/1:43,30:30:73:0.411:2	0/1:32,24:31:56:0.429:2
chr20	31756954	rs17124277	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,43:30:101:0.426:2	./.	./.	./.
chr20	31757078	rs6059139	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,34:33:88:0.386:2	./.	./.	./.
chr20	31767470	rs1075435	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,31:33:112:0.277:2	./.	./.	./.
chr20	31805414	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:32:119:0.034:2	./.	./.	./.
chr20	31812206	rs112731808	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,79:32:155:0.510:2	./.	./.	./.
chr20	31812923	rs3818222	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,75:32:79:0.949:2	0/1:0,53:32:53:1.00:2	0/1:11,15:32:26:0.577:2	0/1:80,62:32:142:0.437:2	0/1:80,67:32:147:0.456:2	./.	0/1:72,67:32:139:0.482:2	0/1:1,139:32:140:0.993:2	0/1:0,104:33:104:1.00:2	0/1:46,51:32:97:0.526:2	0/1:2,122:32:124:0.984:2
chr20	31812949	rs147632261	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,81:32:164:0.494:2	./.	./.	./.
chr20	31876681	rs1078761	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,57:31:57:1.00:2	0/1:1,96:30:97:0.990:2	0/1:46,44:30:90:0.489:2	0/1:30,34:31:64:0.531:2	0/1:27,22:30:49:0.449:2	./.
chr20	31887788	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:34:118:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	31889183	rs6120221	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,39:32:70:0.557:2	./.	./.	./.
chr20	31890175	rs6120222	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,80:31:163:0.491:2	./.	./.	./.
chr20	31890802	rs147404662	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,47:29:144:0.326:2	./.	./.	./.
chr20	31894766	rs41311304	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,46:32:110:0.418:2	./.	./.	0/1:42,29:32:71:0.408:2	./.
chr20	31897554	rs1999663	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,12:32:41:0.293:2	./.	0/1:0,44:32:44:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,54:32:54:1.00:2	./.	0/1:0,42:32:42:1.00:2	./.
chr20	31981849	rs291700	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,102:30:103:0.990:2	0/1:0,57:29:57:1.00:2	0/1:5,7:27:12:0.583:2	0/1:69,69:30:138:0.500:2	0/1:1,94:29:95:0.989:2	0/1:2,156:29:158:0.987:2	./.	0/1:3,132:29:135:0.978:2	0/1:1,160:30:162:0.994:2	0/1:2,97:30:99:0.980:2	0/1:72,70:28:142:0.493:2
chr20	32212690	rs3803939	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,41:32:74:0.554:2	./.	./.	0/1:0,79:32:79:1.00:2	./.	./.	./.	0/1:51,43:33:94:0.457:2
chr20	32248163	rs3746460	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,27:31:53:0.509:2	./.	./.	0/1:22,54:32:76:0.711:2	./.	./.	./.	0/1:18,32:32:50:0.640:2
chr20	32255510	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,45:30:78:0.577:2	./.	./.	./.	./.	./.	./.
chr20	32255611	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:33:85:0.047:2	./.	./.	./.
chr20	32266134	rs35385772	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,96:31:99:0.970:2	./.	./.	./.	./.
chr20	32295541	rs910397	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,49:31:122:0.402:2	./.	./.	0/1:1,92:32:93:0.989:2	./.	./.	./.	0/1:61,52:32:113:0.460:2
chr20	32332912	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,2:34:5:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	32379263	rs2626551	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,6:28:7:0.857:2	0/1:2,6:31:8:0.750:2	./.	./.	./.	./.	0/1:5,3:25:8:0.375:2	./.
chr20	32664866	rs11538302	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,4:34:9:0.444:2
chr20	32664926	rs2281209	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,6:26:10:0.600:2	./.	./.	./.	./.
chr20	32685262	rs142953196	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:35:103:0.039:2	./.	./.
chr20	32693260	rs200434210	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:31:12:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	32856838	rs36093428	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,23:29:46:0.500:2	./.	./.	0/1:9,12:30:21:0.571:2
chr20	32883260	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:34:84:0.048:2	./.
chr20	33095524	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,20:29:45:0.444:2	./.	./.	./.	./.	./.
chr20	33104592	rs2424993	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,4:33:17:0.235:2	0/1:1,110:33:111:0.991:2	0/1:1,90:32:91:0.989:2	0/1:80,42:33:122:0.344:2	0/1:85,83:33:168:0.494:2	0/1:110,65:32:175:0.371:2	0/1:71,64:33:135:0.474:2	0/1:0,87:32:87:1.00:2	0/1:1,117:32:118:0.992:2
chr20	33147649	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:112,4:32:117:0.034:2	./.	./.	./.	./.	./.	./.
chr20	33225756	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,3:31:25:0.120:2
chr20	33297135	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,16:13:106:0.152:2	./.	./.	./.
chr20	33337751	rs3787220	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,107:30:107:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,163:30:163:1.00:2	0/1:4,146:29:150:0.973:2	0/1:0,155:30:155:1.00:2	0/1:54,66:30:120:0.550:2	0/1:0,149:30:149:1.00:2	0/1:1,173:31:174:0.994:2	0/1:0,154:30:154:1.00:2	0/1:0,128:30:128:1.00:2
chr20	33342563	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:135,4:31:139:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr20	33433182	rs201814530	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,80:31:171:0.468:2
chr20	33470694	rs4911163	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,7:31:11:0.636:2	0/1:0,76:30:76:1.00:2	0/1:1,63:31:64:0.984:2	0/1:39,39:30:78:0.500:2	0/1:25,39:31:64:0.609:2	./.	./.	0/1:1,53:31:54:0.981:2	./.
chr20	33509610	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:33:199:0.020:2	./.	./.	./.
chr20	33523448	rs184506175	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,17:32:34:0.500:2	./.	./.	./.	./.
chr20	33565480	rs6060137	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,49:31:119:0.412:2	./.	0/1:44,40:31:84:0.476:2	0/1:49,60:32:109:0.550:2	./.	./.	0/1:34,25:32:59:0.424:2	./.
chr20	33565755	rs11906160	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,10:32:31:0.323:2	./.	./.	./.	./.	./.	./.	./.
chr20	33572941	rs2425007	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,10:32:10:1.00:2	0/1:34,43:33:77:0.558:2	0/1:2,77:32:79:0.975:2	0/1:53,31:32:84:0.369:2	0/1:43,41:32:84:0.488:2	0/1:1,82:32:83:0.988:2	0/1:0,80:33:80:1.00:2	0/1:25,31:33:56:0.554:2	0/1:1,62:32:63:0.984:2
chr20	33574765	rs3746446	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,91:28:92:0.989:2	./.	./.	./.	./.	0/1:36,45:29:81:0.556:2	./.
chr20	33575970	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,10:31:136:0.074:2	./.	./.	./.	./.
chr20	33578203	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:113,4:32:117:0.034:2	./.	./.	./.	./.	./.	./.
chr20	33578251	rs3746444	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:30:14:0.571:2	./.	0/1:1,136:29:137:0.993:2	./.	./.	./.	./.	0/1:48,35:30:83:0.422:2	./.
chr20	33578899	rs2425009	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,33:33:33:1.00:2	0/1:0,17:32:17:1.00:2	./.	0/1:25,28:33:53:0.528:2	0/1:0,44:31:44:1.00:2	0/1:39,12:32:51:0.235:2	0/1:0,46:33:46:1.00:2	0/1:3,62:32:65:0.954:2	0/1:0,33:34:33:1.00:2	0/1:15,16:33:31:0.516:2	0/1:0,50:32:50:1.00:2
chr20	33581955	rs2425012	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:1,128:31:129:0.992:2	0/1:2,78:31:80:0.975:2	0/1:16,9:29:25:0.360:2	./.	./.	0/1:107,87:31:194:0.448:2	0/1:2,188:31:190:0.989:2	0/1:0,188:32:189:1.00:2	0/1:0,189:32:189:1.00:2	./.	0/1:0,150:32:152:1.00:2
chr20	33582046	rs186471205	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,72:31:73:0.986:2	0/1:1,37:31:38:0.974:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	33583331	rs2425015	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,87:31:87:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,128:32:128:1.00:2	0/1:0,72:30:72:1.00:2	0/1:0,98:31:98:1.00:2	0/1:0,85:31:85:1.00:2	0/1:0,117:31:117:1.00:2	0/1:0,122:32:122:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,64:31:64:1.00:2
chr20	33584289	rs3746438	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,36:31:36:1.00:2	0/1:0,24:30:24:1.00:2	0/1:5,4:30:9:0.444:2	./.	./.	0/1:20,19:30:39:0.487:2	0/1:0,36:30:36:1.00:2	0/1:1,46:31:47:0.979:2	0/1:0,34:31:34:1.00:2	./.	0/1:0,37:31:37:1.00:2
chr20	33585437	rs55734215	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,51:31:97:0.526:2	./.	./.	./.	./.	./.	./.	./.
chr20	33586193	rs3746436	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:29:14:0.571:2	./.	0/1:0,53:29:53:1.00:2	./.	./.	./.	./.	0/1:13,16:29:29:0.552:2	./.
chr20	33586372	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:34:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	33587198	rs3746435	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,50:30:52:0.962:2	./.	./.	./.	./.	0/1:11,16:32:27:0.593:2	./.
chr20	33587596	rs80109502	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,9:33:24:0.375:2	./.	./.	./.	./.	./.	./.	./.
chr20	33589107	rs36003887	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,72:32:72:1.00:2	./.	./.	./.	./.	0/1:19,12:32:32:0.387:2	./.
chr20	33592309	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,5:30:177:0.028:2	./.	./.
chr20	33594301	rs139975509	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,68:31:135:0.504:2
chr20	33609075	rs182553395	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,78:30:180:0.433:2	./.	./.	./.	./.
chr20	33657126	rs1998233	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,113:32:114:0.991:2	0/1:0,88:32:88:1.00:2	0/1:0,10:31:10:1.00:2	0/1:94,63:31:157:0.401:2	0/1:0,69:30:69:1.00:2	0/1:109,54:30:163:0.331:2	0/1:2,81:31:83:0.976:2	0/1:0,93:31:93:1.00:2	0/1:0,184:32:184:1.00:2	0/1:94,52:31:147:0.356:2	0/1:0,156:32:156:1.00:2
chr20	33703607	rs3746429	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,11:30:27:0.407:2	./.	0/1:3,187:31:190:0.984:2	./.	./.	./.	./.	0/1:77,71:32:148:0.480:2	./.
chr20	33734974	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,4:30:114:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr20	33760037	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:33:87:0.046:2	./.	./.	./.	./.	./.
chr20	33762692	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:34:43:0.093:2	./.	./.
chr20	33764510	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,15:22:112:0.134:2	0/1:101,13:19:114:0.114:2
chr20	33764554	rs867186	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,79:29:189:0.418:2	./.	./.	./.	./.	./.	./.	./.
chr20	33834708	rs3764733	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,105:31:106:0.991:2	./.	./.	./.	0/1:76,81:32:157:0.516:2	0/1:68,60:32:128:0.469:2	0/1:73,113:32:186:0.608:2
chr20	33872215	rs1802241	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,47:31:87:0.540:2	./.
chr20	33874720	rs2425049	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,5:32:11:0.455:2	0/1:73,32:31:105:0.305:2	./.	./.	./.	./.	./.	0/1:55,24:33:79:0.304:2	./.
chr20	33875698	rs138625315	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,33:32:73:0.452:2	./.	./.	./.	./.
chr20	33971914	rs4911494	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,17:31:23:0.739:2	./.	0/1:49,61:32:110:0.555:2	0/1:0,138:31:138:1.00:2	0/1:74,58:32:132:0.439:2	0/1:2,157:32:159:0.987:2	0/1:1,121:33:122:0.992:2	./.	0/1:83,65:32:148:0.439:2
chr20	34022387	rs224331	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,8:27:9:0.889:2	0/1:0,8:28:8:1.00:2	0/1:3,7:28:10:0.700:2	0/1:19,10:25:29:0.345:2	0/1:12,7:27:19:0.368:2	./.	0/1:19,14:27:33:0.424:2	./.	./.	0/1:0,10:26:10:1.00:2	0/1:23,5:26:28:0.179:2
chr20	34054861	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	34061283	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:33:184:0.022:2	./.	./.	./.	./.	./.
chr20	34062642	rs224362	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:0,24:32:24:1.00:2	0/1:3,5:32:8:0.625:2	0/1:1,43:30:44:0.977:2	0/1:26,29:31:55:0.527:2	./.	0/1:27,16:32:43:0.372:2	./.	./.	0/1:24,24:32:48:0.500:2	0/1:39,30:32:69:0.435:2
chr20	34079058	rs145916875	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,53:32:120:0.442:2	./.	./.
chr20	34079173	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:119,4:33:123:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr20	34089740	rs114063154	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,15:31:29:0.517:2	./.	./.	./.	./.
chr20	34090519	rs3748433	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,27:32:62:0.435:2	0/1:19,13:31:32:0.406:2	./.	0/1:22,24:31:46:0.522:2	./.	./.	./.	0/1:25,38:33:63:0.603:2
chr20	34090979	rs41290924	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:1,45:32:46:0.978:2	0/1:0,27:32:27:1.00:2	0/1:1,3:32:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	34095955	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,3:34:55:0.055:2	./.
chr20	34116282	rs7261862	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,92:32:95:0.968:2	0/1:0,59:32:59:1.00:2	./.	0/1:91,76:32:167:0.455:2	0/1:59,68:33:127:0.535:2	./.	0/1:61,67:33:128:0.523:2	./.	./.	./.	0/1:76,64:34:140:0.457:2
chr20	34131396	rs12481365	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:2,69:32:71:0.972:2	0/1:0,51:33:51:1.00:2	./.	./.	./.	./.	0/1:25,32:31:57:0.561:2	./.	./.	./.	0/1:43,52:32:96:0.547:2
chr20	34144746	rs17845241	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,45:32:84:0.536:2	./.	./.	./.	./.	./.	0/1:29,35:33:64:0.547:2	./.
chr20	34214173	rs11543239	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,20:32:36:0.556:2	./.	./.	./.	./.	./.	./.	./.
chr20	34219480	rs2230219	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,18:29:56:0.321:2	./.	./.	./.	./.	./.	./.	./.
chr20	34219496	rs6579255	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,18:30:53:0.340:2	./.	./.	./.	./.	./.	0/1:18,28:30:46:0.609:2	./.
chr20	34219498	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,5:33:46:0.109:2	./.
chr20	34220755	rs11543244	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,44:32:77:0.571:2	./.	./.	./.	./.	./.	./.	./.
chr20	34240510	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:32:58:0.069:2	./.
chr20	34240767	rs202158484	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.
chr20	34243017	rs6121015	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:118,78:31:196:0.398:2	./.	./.	./.	./.	./.	0/1:103,63:32:166:0.380:2	./.
chr20	34262533	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,6:34:146:0.041:2	./.	./.
chr20	34288733	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:92,4:32:96:0.042:2	./.	./.	./.	./.	./.	./.	./.
chr20	34292647	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,4:29:101:0.040:2	./.	./.	0/1:120,9:32:129:0.070:2	./.	./.	./.	./.
chr20	34292660	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:90,4:34:94:0.043:2	./.	./.	0/1:107,8:33:115:0.070:2	./.	./.	./.	./.
chr20	34302161	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.	./.	./.
chr20	34319989	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:34:154:0.026:2	./.	./.	./.	./.
chr20	34324456	rs2425120	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,38:32:87:0.437:2	./.
chr20	34324484	rs6058312	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,40:30:102:0.392:2	./.
chr20	34596371	rs6060750	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,7:30:13:0.538:2	0/1:21,11:31:32:0.344:2
chr20	34765883	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,32:34:60:0.533:2	./.	./.
chr20	34776387	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,4:33:58:0.069:2	./.	./.	./.	./.	./.	./.	./.
chr20	34783313	rs201719899	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,9:18:84:0.110:2
chr20	34797801	rs73101499	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,52:31:53:0.981:2	0/1:0,30:31:30:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	34827967	rs200339417	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,22:31:63:0.349:2
chr20	35155230	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,3:28:18:0.167:2	./.
chr20	35219408	rs139445684	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,11:32:26:0.423:2	0/1:15,9:31:24:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	35299792	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:33:186:0.022:2
chr20	35396459	rs375360494	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,36:34:57:0.632:2	./.	./.
chr20	35399512	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,3:32:46:0.065:2	./.	./.	./.	./.
chr20	35414905	rs73109216	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,11:26:23:0.478:2
chr20	35422936	rs35707272	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,88:31:88:1.00:2	./.	./.	./.	./.
chr20	35422960	rs41276994	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,8:32:16:0.500:2	./.	./.	./.	./.	./.	./.	0/1:63,38:32:101:0.376:2	./.
chr20	35441225	rs145513467	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,16:32:30:0.533:2	./.	./.	./.
chr20	35444380	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,4:31:72:0.056:2	./.	./.	./.	./.	./.	./.	./.
chr20	35467713	rs1146250	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,14:31:28:0.500:2	0/1:11,9:31:20:0.450:2	./.	0/1:16,12:30:28:0.429:2	0/1:12,18:30:30:0.600:2	./.	0/1:18,7:31:25:0.280:2	0/1:0,38:30:38:1.00:2	0/1:12,9:31:21:0.429:2	0/1:10,11:30:21:0.524:2	0/1:0,9:31:9:1.00:2
chr20	35491084	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	35507542	rs3748459	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,38:31:38:1.00:2	0/1:0,20:32:20:1.00:2	./.	./.	./.	0/1:28,41:31:69:0.594:2	0/1:37,23:31:60:0.383:2	./.	./.	0/1:26,28:31:54:0.519:2	0/1:18,16:32:34:0.471:2
chr20	35533855	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:32:87:0.046:2
chr20	35627160	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:31:90:0.044:2	./.	./.	./.	./.	./.
chr20	35675512	rs149999468	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,9:32:11:0.818:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	35695423	rs375573052	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:32:168:0.024:2
chr20	35731181	rs117314541	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,68:33:152:0.447:2	./.	./.	./.
chr20	35740794	rs1744760	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,34:29:99:0.343:2	0/1:32,33:30:65:0.508:2	0/1:6,8:28:14:0.571:2	0/1:72,62:30:134:0.463:2	0/1:0,90:29:90:1.00:2	./.	./.	0/1:4,115:29:119:0.966:2	0/1:0,138:30:138:1.00:2	0/1:48,39:31:87:0.448:2	./.
chr20	35749423	rs113747754	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,40:33:80:0.500:2	./.	./.	./.
chr20	35766337	rs8115854	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:54,52:32:106:0.491:2	0/1:33,25:31:58:0.431:2	0/1:6,7:32:13:0.538:2	./.	./.	0/1:2,110:32:112:0.982:2	0/1:1,64:33:65:0.985:2	./.	./.	0/1:39,42:32:81:0.519:2	0/1:0,145:32:145:1.00:2
chr20	35769592	rs1744769	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,96:31:97:0.990:2	0/1:0,54:29:54:1.00:2	0/1:0,16:30:16:1.00:2	0/1:65,51:31:116:0.440:2	0/1:1,74:29:75:0.987:2	0/1:0,105:30:106:1.00:2	0/1:0,90:30:90:1.00:2	0/1:0,119:30:119:1.00:2	0/1:0,148:31:148:1.00:2	0/1:0,91:30:91:1.00:2	0/1:0,173:30:173:1.00:2
chr20	35769647	rs1780680	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,44:31:85:0.518:2	0/1:30,19:32:49:0.388:2	0/1:6,6:31:12:0.500:2	0/1:47,49:31:96:0.510:2	0/1:6,63:31:69:0.913:2	./.	./.	0/1:60,43:31:103:0.417:2	0/1:1,120:32:121:0.992:2	0/1:53,55:31:108:0.509:2	./.
chr20	35783494	rs1615246	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,38:32:83:0.458:2	0/1:18,25:31:43:0.581:2	0/1:7,4:33:11:0.364:2	0/1:50,47:32:97:0.485:2	0/1:0,72:32:72:1.00:2	./.	./.	0/1:49,41:32:90:0.456:2	0/1:1,87:33:88:0.989:2	0/1:29,23:33:52:0.442:2	./.
chr20	35796541	rs62621241	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,47:30:105:0.448:2	0/1:71,59:30:130:0.454:2	./.	./.	./.	0/1:61,48:30:110:0.440:2
chr20	35796631	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:33:65:0.062:2	./.	./.
chr20	35827489	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:32:127:0.031:2	./.	./.
chr20	35865054	rs4608	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:32:80:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,13:32:13:1.00:2	0/1:47,55:32:102:0.539:2	0/1:2,137:32:139:0.986:2	0/1:0,118:32:118:1.00:2	0/1:1,119:32:120:0.992:2	0/1:2,123:32:125:0.984:2	0/1:0,94:33:94:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,76:32:76:1.00:2
chr20	36030939	rs1885257	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,85:29:86:1.00:2	0/1:0,61:29:61:1.00:2	0/1:0,21:30:21:1.00:2	./.	0/1:0,176:29:176:1.00:2	0/1:0,161:30:161:1.00:2	0/1:0,169:29:170:1.00:2	0/1:0,167:29:167:1.00:2	0/1:0,140:29:140:1.00:2	0/1:0,125:29:125:1.00:2	0/1:0,116:29:116:1.00:2
chr20	36149782	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,5:24:71:0.070:2
chr20	36375071	rs2297154	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,175:33:175:1.00:2	0/1:0,120:32:120:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,181:33:181:1.00:2	0/1:0,183:32:183:1.00:2	0/1:0,172:33:172:1.00:2	0/1:0,177:33:177:1.00:2	0/1:0,168:33:168:1.00:2	0/1:0,175:34:175:1.00:2	0/1:0,182:33:183:1.00:2	0/1:0,185:33:185:1.00:2
chr20	36561929	rs377174284	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,25:32:37:0.676:2	./.	./.
chr20	36572456	rs139749355	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:32:11:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	36624780	rs34900517	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,24:33:42:0.571:2	./.	./.	./.
chr20	36641735	rs34249579	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,34:32:66:0.515:2	./.	./.
chr20	36668874	rs2273353	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:55,39:32:94:0.415:2	0/1:24,11:32:35:0.314:2	./.	./.	./.	./.	./.	./.	./.	0/1:43,33:32:76:0.434:2	./.
chr20	36694534	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,5:33:36:0.139:2
chr20	36694618	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,8:32:43:0.186:2
chr20	36694646	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,3:33:28:0.107:2
chr20	36767986	rs2229470	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,38:31:106:0.362:2	0/1:39,30:31:69:0.435:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	36770555	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:33:185:0.022:2	./.	./.
chr20	36770588	rs2076390	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:56,55:31:111:0.495:2	0/1:38,30:31:68:0.441:2	./.	0/1:79,79:29:158:0.500:2	0/1:56,89:30:146:0.614:2	./.	./.	./.	./.	./.	./.
chr20	36841756	rs1534967	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,12:31:12:1.00:2	./.	0/1:25,20:30:45:0.444:2	0/1:26,36:31:62:0.581:2	0/1:31,26:31:57:0.456:2	0/1:36,28:30:64:0.438:2	0/1:47,18:32:65:0.277:2	0/1:16,13:31:29:0.448:2	0/1:0,41:30:41:1.00:2
chr20	36841914	rs3746471	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:33:5:1.00:2	./.	0/1:17,18:31:35:0.514:2	0/1:19,10:31:29:0.345:2	0/1:17,22:32:39:0.564:2	0/1:25,19:33:44:0.432:2	0/1:23,30:33:53:0.566:2	0/1:13,14:33:27:0.519:2	0/1:0,30:31:30:1.00:2
chr20	36845738	rs760998	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:29:11:1.00:2	./.	./.	./.	0/1:54,31:29:85:0.365:2	./.	0/1:54,37:31:91:0.407:2	0/1:37,49:29:86:0.570:2	./.
chr20	36850940	rs41310010	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,18:28:33:0.545:2	./.	./.	./.
chr20	36859711	rs1205418	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,16:32:29:0.552:2	0/1:9,16:32:25:0.640:2	./.	./.	./.	0/1:5,12:32:17:0.706:2	0/1:0,30:33:30:1.00:2
chr20	36869004	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:123,5:32:128:0.039:2	./.	./.	./.	./.	./.	./.
chr20	36869516	rs1205434	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,12:31:20:0.600:2	0/1:7,12:31:19:0.632:2	./.	0/1:15,5:32:20:0.250:2	./.	0/1:0,17:31:17:1.00:2	0/1:0,33:31:33:1.00:2
chr20	36870122	rs1205435	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,21:27:52:0.404:2	0/1:58,34:28:92:0.370:2	./.	0/1:34,25:28:59:0.424:2	./.	0/1:0,67:29:67:1.00:2	0/1:1,75:29:76:0.987:2
chr20	36870315	rs116939237	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,17:28:36:0.472:2	0/1:2,11:31:13:0.846:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	36888741	rs145582338	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,32:31:79:0.405:2
chr20	36919758	rs10446011	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:17,7:29:24:0.292:2	0/1:3,6:27:9:0.667:2	./.	./.	0/1:0,18:31:18:1.00:2	./.	./.	0/1:15,15:29:30:0.500:2	0/1:13,24:31:37:0.649:2	./.	./.
chr20	36932660	rs1341023	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,51:30:105:0.490:2	0/1:0,123:30:124:1.00:2	./.	0/1:0,84:30:84:1.00:2	0/1:1,110:30:111:0.991:2	0/1:0,86:31:87:1.00:2	./.	0/1:37,63:30:100:0.630:2
chr20	36932676	rs1341024	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,48:29:97:0.495:2	0/1:0,112:29:112:1.00:2	./.	0/1:0,70:28:70:1.00:2	0/1:1,94:29:95:0.989:2	0/1:0,64:29:64:1.00:2	./.	0/1:31,55:27:86:0.640:2
chr20	36937431	rs5743502	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,79:31:169:0.467:2	./.	./.	./.	./.	./.
chr20	36939052	rs5743507	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:38,32:27:70:0.457:2	0/1:27,10:28:37:0.270:2	0/1:4,4:29:8:0.500:2	./.	0/1:47,42:27:89:0.472:2	0/1:51,41:28:92:0.446:2	./.	./.	./.	./.	./.
chr20	36940314	rs5743509	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,31:32:70:0.443:2
chr20	36946848	rs4358188	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,131:32:131:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,16:32:16:1.00:2	0/1:80,65:32:145:0.448:2	0/1:52,68:31:120:0.567:2	0/1:71,57:32:128:0.445:2	./.	./.	./.	0/1:71,66:32:137:0.482:2	./.
chr20	36954718	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,9:14:64:0.141:2	./.	0/1:71,9:15:80:0.113:2	0/1:76,17:12:93:0.183:2	./.	./.	./.	./.
chr20	36956026	rs5741809	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,60:31:114:0.526:2	./.	./.	./.	./.	./.	./.	./.
chr20	36959436	rs5743535	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,26:29:57:0.456:2	0/1:23,19:28:42:0.452:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	36965617	rs1131847	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,34:29:35:0.971:2	0/1:0,8:26:8:1.00:2	./.	0/1:0,27:31:27:1.00:2	0/1:16,7:31:23:0.304:2	0/1:14,16:32:30:0.533:2	./.	0/1:20,19:30:39:0.487:2	0/1:21,13:30:34:0.382:2	0/1:10,11:30:21:0.524:2	0/1:9,22:30:31:0.710:2
chr20	36974945	rs2232580	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,10:34:23:0.435:2	0/1:14,10:32:24:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,9:34:37:0.243:2
chr20	36977970	rs1739654	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,15:30:30:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr20	36979265	rs2232582	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:26,14:31:40:0.350:2	0/1:9,21:30:30:0.700:2	./.	0/1:30,19:30:49:0.388:2	./.	./.	./.	./.	./.	./.	0/1:34,18:29:52:0.346:2
chr20	36982779	rs140791140	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,31:32:57:0.544:2	./.	./.	./.	./.	./.	./.
chr20	36982811	rs5744204	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,13:32:35:0.371:2	./.	./.	./.	./.	./.	./.	./.
chr20	36989381	rs2232596	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,20:32:33:0.606:2	0/1:9,15:33:24:0.625:2	0/1:5,5:33:10:0.500:2	0/1:0,39:33:39:1.00:2	0/1:35,20:33:55:0.364:2	0/1:31,25:32:56:0.446:2	0/1:1,45:33:46:0.978:2	./.	0/1:25,33:34:58:0.569:2	0/1:0,54:33:54:1.00:2	0/1:37,22:32:59:0.373:2
chr20	36993255	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:31:145:0.028:2	./.	./.	./.	./.
chr20	36993333	rs2232607	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,60:31:155:0.387:2	./.	./.	./.	./.	./.	./.
chr20	36997655	rs2232613	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,25:33:53:0.472:2	./.
chr20	36999897	rs2232616	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:18,16:33:34:0.471:2	0/1:9,7:33:16:0.438:2	./.	0/1:26,20:33:46:0.435:2	./.	./.	./.	./.	./.	0/1:9,13:33:22:0.591:2	./.
chr20	37001761	rs2232618	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:21,28:32:49:0.571:2	0/1:13,15:32:28:0.536:2	./.	./.	./.	./.	./.	./.	./.	0/1:26,12:33:38:0.316:2	./.
chr20	37002589	rs2232619	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,27:31:55:0.491:2	./.	./.	./.	./.	./.	./.	./.
chr20	37005283	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:138,4:31:142:0.028:2	./.	./.	./.	./.	./.	./.
chr20	37153464	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:191,5:28:196:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr20	37168469	rs6070521	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,32:31:74:0.432:2	./.	./.	./.	./.	./.	./.	./.
chr20	37255681	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,33:32:66:0.500:2
chr20	37257590	rs6070809	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,42:31:89:0.472:2	0/1:31,27:32:58:0.466:2	./.	./.	./.	0/1:44,36:32:80:0.450:2	./.	./.	./.	./.	0/1:70,44:32:114:0.386:2
chr20	37258222	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr20	37268017	rs201838972	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,71:31:132:0.538:2	./.	./.	./.	./.	./.
chr20	37277271	rs220526	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:32:11:0.273:2	./.	./.	./.	./.	0/1:11,4:29:15:0.267:2	0/1:7,5:30:12:0.417:2	0/1:0,8:32:8:1.00:2	./.	./.	0/1:11,11:32:22:0.500:2
chr20	37357172	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:32:186:0.022:2	./.	./.	./.
chr20	37378882	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:33:164:0.024:2	./.	./.	./.	./.	./.
chr20	37383640	rs2748663	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,17:28:17:1.00:2	0/1:0,142:29:142:1.00:2	./.	./.	0/1:50,60:29:110:0.545:2	./.	0/1:77,69:30:146:0.473:2	0/1:0,118:29:118:1.00:2	0/1:66,57:29:123:0.463:2
chr20	37396114	rs111586858	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,28:32:57:0.491:2	0/1:15,16:32:31:0.516:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	37396120	rs2245231	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,29:29:59:0.492:2	0/1:20,15:28:35:0.429:2	0/1:0,7:28:7:1.00:2	0/1:1,77:29:78:0.987:2	0/1:39,28:26:67:0.418:2	./.	0/1:2,57:28:59:0.966:2	./.	0/1:41,42:30:83:0.506:2	0/1:0,65:29:65:1.00:2	0/1:46,36:27:82:0.439:2
chr20	37400388	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,4:33:72:0.056:2	./.	./.	./.	./.	./.	./.	./.
chr20	37534642	rs55658640	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,21:31:66:0.318:2	./.	./.	./.	./.	./.	./.	./.
chr20	37534665	rs4812332	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,8:30:14:0.571:2	0/1:0,72:31:72:1.00:2	./.	0/1:37,47:30:84:0.560:2	0/1:2,80:32:82:0.976:2	0/1:0,96:31:96:1.00:2	0/1:37,41:32:78:0.526:2	0/1:39,17:31:56:0.304:2	0/1:33,34:31:68:0.507:2
chr20	37534713	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:31:44:0.091:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	37546977	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,4:30:88:0.045:2	./.	./.	./.	./.	./.	./.	./.
chr20	37546989	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	37555116	rs3752290	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	0/1:4,7:30:11:0.636:2	0/1:1,6:27:7:0.857:2	0/1:0,6:32:6:1.00:2	./.	./.	./.
chr20	37570725	rs3752293	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:32:10:0.500:2	0/1:3,106:31:109:0.972:2	./.	0/1:60,47:31:107:0.439:2	0/1:2,109:32:111:0.982:2	0/1:4,134:31:138:0.971:2	0/1:62,51:32:113:0.451:2	0/1:63,53:32:116:0.457:2	0/1:78,57:31:135:0.422:2
chr20	37601243	rs16987712	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,35:31:59:0.593:2	./.	0/1:23,10:31:33:0.303:2	./.	0/1:3,47:30:50:0.940:2	0/1:31,19:31:50:0.380:2	./.	./.
chr20	37621052	rs36053162	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:87,68:32:155:0.439:2	./.	./.	./.	./.	./.	./.
chr20	37647448	rs202019704	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,7:17:54:0.130:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,11:14:82:0.136:2
chr20	37667138	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:31:119:0.034:2	./.	./.	./.
chr20	37667182	rs3752302	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:26:6:0.500:2	0/1:24,28:32:52:0.538:2	./.	./.	0/1:0,61:32:61:1.00:2	./.	./.	0/1:22,26:32:48:0.542:2	0/1:39,29:32:68:0.426:2
chr20	39657763	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	39750375	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:29:87:0.046:2	./.	./.	./.
chr20	39750413	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:29:91:0.044:2	./.	./.	./.
chr20	39792063	rs2228246	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,22:30:72:0.306:2	0/1:59,20:28:79:0.253:2	./.	0/1:40,36:32:76:0.474:2	./.	./.
chr20	39797465	rs753381	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,108:32:111:0.973:2	0/1:0,61:31:61:1.00:2	0/1:6,7:32:13:0.538:2	0/1:0,142:32:142:1.00:2	0/1:84,81:32:165:0.491:2	0/1:81,56:31:137:0.409:2	0/1:1,175:32:176:0.994:2	0/1:1,176:32:177:0.994:2	0/1:0,123:33:123:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,104:32:104:1.00:2
chr20	39798144	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:174,5:27:179:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr20	39801488	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:34:70:0.057:2	./.
chr20	39802814	rs33917926	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,30:32:64:0.469:2	./.	./.
chr20	39831583	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:33:90:0.044:2	./.
chr20	39832628	rs17265513	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,62:32:106:0.585:2	./.	0/1:39,51:31:90:0.567:2	0/1:74,55:32:129:0.426:2	./.	0/1:46,50:33:96:0.521:2	./.	./.
chr20	39974584	rs41277014	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,46:30:126:0.365:2	./.	./.	./.	./.	./.	./.	./.
chr20	39974624	rs41277016	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,51:30:102:0.500:2	0/1:54,74:30:128:0.578:2	./.	./.	./.
chr20	39978448	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:33:97:0.041:2	./.
chr20	39978998	rs61730990	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,38:33:75:0.507:2	./.	./.
chr20	39983372	rs74573862	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,21:31:59:0.356:2	./.	./.
chr20	39984623	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:107,13:13:120:0.108:2	./.	./.	./.	./.	./.	./.	0/1:157,15:14:172:0.087:2	./.	./.	0/1:119,14:14:135:0.105:2
chr20	39986085	rs12625565	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,22:31:41:0.537:2	./.	0/1:15,22:31:37:0.595:2	0/1:20,28:32:48:0.583:2	./.	./.	0/1:27,18:31:45:0.400:2	./.
chr20	39990342	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,28:30:54:0.519:2	./.	./.	./.
chr20	39990377	rs61739314	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,32:32:72:0.444:2	./.	./.	./.	./.	./.	0/1:44,30:33:74:0.405:2	./.
chr20	39990614	rs2235592	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,21:30:36:0.600:2	./.	0/1:20,25:28:45:0.556:2	0/1:21,19:29:41:0.475:2	./.	./.	0/1:13,11:29:24:0.458:2	./.
chr20	39990700	rs41278104	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,29:32:55:0.527:2	./.	0/1:28,26:32:54:0.481:2	0/1:64,46:32:110:0.418:2	./.	./.	0/1:16,13:32:29:0.448:2	./.
chr20	39991144	rs41307177	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:27:5:0.600:2	./.	./.	0/1:0,2:27:2:1.00:2	./.
chr20	39991171	rs61739307	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:28:13:0.385:2	./.	./.	0/1:4,4:30:8:0.500:2	./.	./.	0/1:1,4:32:5:0.800:2	./.
chr20	39992285	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,14:32:28:0.500:2	./.
chr20	40079655	rs41278126	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,89:32:173:0.514:2	./.	0/1:75,94:33:169:0.556:2	./.	./.	./.	./.
chr20	40084452	rs150157135	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,42:30:106:0.396:2	./.	./.	./.	./.
chr20	40112064	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:33:77:0.052:2	./.	./.	./.	./.
chr20	40126048	rs41304645	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,89:32:192:0.464:2	./.	./.	./.	./.	./.	0/1:85,95:32:180:0.528:2	./.
chr20	40143465	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:32:58:0.069:2	./.
chr20	40162062	rs61753666	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,48:28:112:0.429:2	./.	./.	./.	./.	./.	./.	./.
chr20	40179909	rs6129863	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:33:6:0.500:2	0/1:18,9:32:27:0.333:2	./.	0/1:16,13:32:29:0.448:2	0/1:0,7:33:7:1.00:2	./.	0/1:20,13:33:33:0.394:2	./.	./.
chr20	40179920	rs6072417	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:31:7:0.429:2	0/1:18,9:31:27:0.333:2	./.	0/1:19,12:30:31:0.387:2	0/1:0,7:32:7:1.00:2	./.	0/1:20,15:33:35:0.429:2	./.	./.
chr20	40714388	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:33:86:0.047:2	./.
chr20	40714479	rs2016647	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,4:31:6:0.667:2	0/1:32,19:29:51:0.373:2	./.	0/1:19,29:30:48:0.604:2	0/1:2,59:31:61:0.967:2	0/1:35,28:32:63:0.444:2	./.	0/1:0,37:31:37:1.00:2	./.
chr20	41306600	rs2425516	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:68,39:29:107:0.364:2	0/1:32,29:28:61:0.475:2	./.	0/1:0,125:29:125:1.00:2	0/1:101,83:29:184:0.451:2	./.	0/1:1,127:29:128:0.992:2	./.	0/1:73,46:29:119:0.387:2	0/1:52,59:29:111:0.532:2	0/1:51,49:28:100:0.490:2
chr20	42089432	rs199769549	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,4:29:42:0.095:2	0/1:61,4:30:65:0.062:2	./.	0/1:66,6:30:72:0.083:2	./.	./.	./.
chr20	42089511	rs2235611	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,22:33:62:0.355:2	0/1:19,11:33:30:0.367:2	0/1:0,9:32:9:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,50:31:50:1.00:2	0/1:2,53:32:55:0.964:2	0/1:0,74:32:74:1.00:2	0/1:0,58:33:58:1.00:2	0/1:0,43:32:43:1.00:2	0/1:1,74:32:75:0.987:2
chr20	42144049	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:34:44:0.091:2	./.
chr20	42164722	rs3746528	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,5:30:10:0.500:2
chr20	42164872	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,13:31:33:0.394:2	./.	./.	./.	./.	./.	./.	./.
chr20	42196283	rs184055248	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,13:32:40:0.325:2	./.	./.	./.	./.	./.	./.	./.
chr20	42196550	rs2067061	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,67:32:68:0.985:2	0/1:33,16:33:49:0.327:2	0/1:35,39:33:74:0.527:2	./.	0/1:0,85:33:85:1.00:2	./.	0/1:0,45:32:45:1.00:2	0/1:24,34:33:58:0.586:2
chr20	42196576	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:33:85:0.047:2	./.	./.
chr20	42196647	rs62224800	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,16:29:39:0.410:2	./.	./.	./.	./.	./.	./.
chr20	42199708	rs56012733	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,17:31:47:0.362:2	./.	./.	./.	./.
chr20	42199710	rs200172087	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,18:31:63:0.286:2	./.	./.	./.	./.
chr20	42204913	rs201107079	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,12:11:54:0.222:2	0/1:28,8:15:36:0.222:2	./.	./.	./.	./.	./.	./.
chr20	42225114	rs2664519	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:31:73:1.00:2	0/1:0,73:32:73:1.00:2	0/1:1,8:29:9:0.889:2	0/1:0,94:30:94:1.00:2	0/1:25,25:30:50:0.500:2	0/1:0,52:30:52:1.00:2	0/1:0,38:30:38:1.00:2	0/1:47,34:31:81:0.420:2	0/1:0,75:30:75:1.00:2	0/1:0,75:30:75:1.00:2	0/1:0,101:31:101:1.00:2
chr20	42249557	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:30:127:0.031:2	./.	./.
chr20	42264653	rs41296223	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,31:33:52:0.596:2	./.	./.	./.	./.
chr20	42265806	rs78526697	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:31:68:0.059:2
chr20	42310509	rs442143	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:28:55:1.00:2	0/1:0,34:27:34:1.00:2	0/1:0,2:28:2:1.00:2	0/1:0,70:28:70:1.00:2	0/1:0,79:28:79:1.00:2	0/1:0,86:28:86:1.00:2	0/1:1,70:28:71:0.986:2	0/1:0,110:28:110:1.00:2	0/1:2,69:28:71:0.972:2	0/1:0,58:28:58:1.00:2	0/1:0,70:28:70:1.00:2
chr20	42328639	rs285162	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:28:23:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,51:28:51:1.00:2	0/1:0,25:29:25:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,46:29:46:1.00:2	0/1:0,52:28:52:1.00:2	0/1:0,41:29:41:1.00:2	0/1:0,30:28:30:1.00:2	0/1:0,49:29:49:1.00:2
chr20	42331200	rs6017146	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,52:33:111:0.468:2	./.	./.	./.	./.	./.
chr20	42331457	rs2070235	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,88:31:185:0.476:2	0/1:101,90:32:191:0.471:2	./.	./.	./.	./.
chr20	42355169	rs17826038	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,50:32:111:0.450:2	0/1:36,31:33:67:0.463:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	42679955	rs41279272	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,52:30:131:0.397:2	./.	./.	./.	./.	./.	./.	0/1:56,37:29:93:0.398:2
chr20	42683046	rs182587475	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,36:31:55:0.655:2	./.	./.	./.
chr20	42697366	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:29:73:0.055:2	./.
chr20	42743454	rs6093935	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,28:30:62:0.452:2	0/1:58,43:29:101:0.426:2	0/1:36,38:29:74:0.514:2	./.	./.	0/1:36,31:30:67:0.463:2	./.	./.
chr20	42744587	rs74352869	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:30:5:1.00:2	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.
chr20	42747247	rs3810510	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,23:32:40:0.575:2	0/1:22,15:31:37:0.405:2	./.	./.	./.
chr20	42747254	rs7268512	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,15:31:31:0.484:2	./.	./.	./.	./.	./.	./.	./.
chr20	42788496	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,18:30:51:0.353:2	./.	./.	./.	./.	./.
chr20	42815190	rs1883790	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:30:31:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,53:29:53:1.00:2	0/1:39,18:28:57:0.316:2	0/1:0,39:30:39:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,62:29:62:1.00:2	0/1:34,17:30:51:0.333:2	0/1:18,19:31:37:0.514:2	0/1:16,28:30:44:0.636:2
chr20	42825929	rs8268	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,45:30:86:0.523:2	./.	./.	./.	./.	./.
chr20	42826350	rs9346	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,25:32:54:0.463:2	./.	./.	./.	./.	./.
chr20	42826379	rs11274	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,10:31:27:0.370:2	./.	./.	./.	./.	./.
chr20	42939750	rs6073401	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,7:31:7:1.00:2	0/1:0,4:32:4:1.00:2	./.	0/1:0,25:32:25:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,13:32:13:1.00:2
chr20	42965841	rs11699901	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,13:32:43:0.302:2	./.	./.	./.	0/1:23,22:33:45:0.489:2	./.	0/1:20,8:32:28:0.286:2
chr20	42965863	rs3746570	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:1,34:31:35:0.971:2	0/1:0,23:32:23:1.00:2	./.	./.	./.	./.	./.	0/1:25,17:29:42:0.405:2	./.	0/1:16,16:31:32:0.500:2	./.
chr20	42966025	rs1884612	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,62:30:62:1.00:2	0/1:2,43:28:45:0.956:2	./.	./.	0/1:58,71:29:129:0.550:2	./.	./.	0/1:61,59:29:120:0.492:2	0/1:49,49:30:99:0.500:2	0/1:43,34:26:77:0.442:2	0/1:34,38:29:72:0.528:2
chr20	42973935	rs11697359	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,60:28:146:0.411:2	./.	./.	./.	0/1:46,36:28:82:0.439:2	./.	0/1:38,26:27:64:0.406:2
chr20	42973972	rs144380945	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,60:29:123:0.488:2	./.	./.	./.	./.
chr20	43042364	rs1800961	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,81:30:159:0.509:2	./.	./.	./.	./.	./.	./.
chr20	43090843	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:32:62:0.066:2	./.	./.	./.	./.
chr20	43093851	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:31:101:0.040:2	./.	./.	./.	./.	./.
chr20	43109033	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,3:33:29:0.103:2	./.
chr20	43252915	rs244076	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,127:31:127:1.00:2	./.	0/1:7,121:31:128:0.945:2	./.	./.	./.	./.
chr20	43254298	rs61737144	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,102:29:103:0.990:2	./.	./.	./.	./.	./.	./.
chr20	43257762	rs189751145	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,87:30:143:0.608:2	./.	./.	./.	./.	./.	./.
chr20	43264927	rs394105	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:31:77:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,103:30:103:1.00:2	0/1:0,103:30:103:1.00:2	0/1:0,99:30:100:1.00:2	0/1:0,66:29:66:1.00:2	0/1:0,90:30:90:1.00:2	0/1:0,93:31:93:1.00:2	0/1:0,67:30:67:1.00:2	0/1:0,98:31:98:1.00:2
chr20	43348653	rs33932543	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:33:10:0.300:2	./.	./.	./.
chr20	43348735	rs2296530	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.
chr20	43378770	rs1111032	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,8:32:12:0.667:2	0/1:6,4:33:10:0.400:2	./.	0/1:0,16:33:16:1.00:2	0/1:20,19:31:39:0.487:2	0/1:0,20:32:20:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,23:32:23:1.00:2	0/1:15,18:32:33:0.545:2	0/1:11,11:33:22:0.500:2	0/1:12,6:33:18:0.333:2
chr20	43379264	rs6073538	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,3:34:3:1.00:2	0/1:2,2:33:4:0.500:2	./.	0/1:0,3:32:3:1.00:2	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.
chr20	43379454	rs13042905	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr20	43530234	rs4931	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:33:9:1.00:2	./.	./.	./.	0/1:50,66:33:116:0.569:2	0/1:79,60:32:139:0.432:2	0/1:47,53:34:100:0.530:2	0/1:48,71:33:119:0.597:2	0/1:1,99:32:100:0.990:2
chr20	43530278	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:31:134:0.030:2	./.	./.	./.
chr20	43535101	rs6876	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.	./.	./.	0/1:18,30:29:48:0.625:2	./.	0/1:35,21:29:56:0.375:2	./.	0/1:31,23:29:54:0.426:2
chr20	43547677	rs2075960	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:2,66:29:68:0.971:2	0/1:0,35:30:35:1.00:2	./.	0/1:1,82:30:83:0.988:2	./.	0/1:47,37:30:84:0.440:2	./.	0/1:46,44:29:90:0.489:2	0/1:61,34:30:95:0.358:2	./.	./.
chr20	43565559	rs3746583	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,47:33:140:0.338:2	./.	./.	./.	./.
chr20	43565622	rs3746584	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,96:32:97:0.990:2	0/1:2,48:33:50:0.960:2	./.	0/1:1,128:32:129:0.992:2	0/1:41,71:32:112:0.634:2	0/1:55,52:32:107:0.486:2	./.	0/1:70,52:32:122:0.426:2	0/1:43,65:33:108:0.602:2	./.	./.
chr20	43566787	rs11780	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,58:29:58:1.00:2	0/1:1,31:29:32:0.969:2	./.	0/1:1,87:30:88:0.989:2	0/1:48,41:30:89:0.461:2	0/1:39,42:30:81:0.519:2	0/1:67,66:30:133:0.496:2	0/1:49,54:29:103:0.524:2	0/1:52,46:31:98:0.469:2	./.	./.
chr20	43629135	rs17420378	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,42:30:66:0.636:2	0/1:23,9:32:32:0.281:2	./.	./.	0/1:35,29:31:64:0.453:2	0/1:32,23:30:55:0.418:2	./.	0/1:37,32:31:69:0.464:2	./.	0/1:43,25:32:68:0.368:2	0/1:1,61:31:62:0.984:2
chr20	43723627	rs734784	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,5:29:8:0.625:2	0/1:1,67:29:68:0.985:2	0/1:16,17:29:33:0.515:2	0/1:0,46:29:46:1.00:2	0/1:0,45:29:45:1.00:2	0/1:28,26:28:54:0.481:2	0/1:17,22:29:39:0.564:2	0/1:0,31:29:31:1.00:2	0/1:0,43:29:43:1.00:2
chr20	43727155	rs13043825	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:32:6:1.00:2	./.	./.	0/1:0,4:27:4:1.00:2	0/1:1,2:33:3:0.667:2	0/1:1,2:32:3:0.667:2	0/1:0,4:31:4:1.00:2	0/1:0,4:32:4:1.00:2
chr20	43727305	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,14:28:21:0.667:2	./.	./.	./.	./.	./.
chr20	43739119	rs17422688	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,37:30:79:0.468:2	./.	./.	./.	./.	./.
chr20	43803613	rs17333103	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,59:31:136:0.434:2	./.	./.	./.	./.	./.
chr20	43804522	rs2664581	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,26:33:80:0.325:2	./.	./.	./.	./.	./.
chr20	43835683	rs2233882	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,59:28:165:0.358:2	./.	./.	./.	./.	./.
chr20	43836173	rs2301366	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,44:30:98:0.449:2	0/1:63,66:31:130:0.512:2	./.	./.	./.	./.	./.
chr20	43836817	rs17850164	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,6:27:85:0.071:2	./.	./.	./.
chr20	43836872	rs2233886	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,6:28:132:0.045:2	./.	./.	./.
chr20	43836997	rs7270575	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,5:33:91:0.055:2	./.	./.	./.	./.	./.	./.
chr20	43837001	rs143454415	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:33:139:0.029:2	./.	./.
chr20	43837303	rs2233889	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:126,66:32:192:0.344:2	./.	./.	./.	./.	./.	./.
chr20	43850054	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,6:29:172:0.035:2
chr20	43850069	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,6:32:104:0.058:2	./.	./.	0/1:152,9:34:161:0.056:2	./.	./.	0/1:185,6:33:191:0.031:2
chr20	43850400	rs2233896	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,23:31:80:0.288:2	./.	./.	./.	./.	./.
chr20	43850409	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,4:33:86:0.047:2	./.	./.	./.	./.	./.	./.
chr20	43850525	rs2233898	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,40:32:95:0.421:2	./.	./.	./.	./.	./.
chr20	43851094	rs2233901	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,33:30:77:0.429:2	./.	./.	./.	./.	./.
chr20	43851108	rs2233903	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,31:29:74:0.419:2	./.	./.	./.	./.	./.	./.
chr20	43851320	rs2233904	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,33:32:75:0.440:2	./.	./.	./.	./.	./.
chr20	43851375	rs2071650	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,28:29:58:0.483:2	./.	0/1:80,4:31:84:0.048:2	./.	./.	./.	./.
chr20	43922403	rs2233107	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,8:32:19:0.421:2	./.	./.	./.	./.	./.	./.
chr20	43926573	rs2227275	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,6:32:11:0.545:2	0/1:30,41:32:71:0.577:2	0/1:0,97:31:97:1.00:2	./.	./.	0/1:38,50:32:88:0.568:2	./.	0/1:25,27:32:52:0.519:2	0/1:25,32:31:57:0.561:2
chr20	43933021	rs2072788	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	43933163	rs2233094	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,12:31:27:0.444:2	0/1:17,15:30:32:0.469:2	0/1:3,5:29:8:0.625:2	0/1:38,4:31:42:0.095:2	./.	./.	0/1:15,5:29:20:0.250:2	./.	0/1:0,21:31:21:1.00:2	./.	0/1:7,7:30:14:0.500:2
chr20	43933196	rs2233093	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,109:28:109:1.00:2	./.	./.	./.	./.	./.
chr20	43942213	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:32:75:0.053:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	43944850	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:33:141:0.028:2	./.	./.	./.
chr20	43944958	rs2741500	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,101:32:101:1.00:2	./.	./.	./.	./.	0/1:29,24:33:53:0.453:2
chr20	43961694	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.	./.	./.	./.
chr20	43976991	rs2228384	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:6,3:32:9:0.333:2	./.	0/1:0,5:34:5:1.00:2	0/1:0,11:32:11:1.00:2	0/1:7,3:33:10:0.300:2	0/1:6,3:30:9:0.333:2	./.	0/1:6,4:32:10:0.400:2	0/1:6,9:33:15:0.600:2	0/1:1,2:33:3:0.667:2	./.
chr20	44038574	rs1127497	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,22:32:44:0.500:2	0/1:14,13:30:27:0.481:2	0/1:0,7:28:7:1.00:2	0/1:36,39:31:75:0.520:2	0/1:0,52:30:52:1.00:2	0/1:40,35:31:75:0.467:2	0/1:45,22:31:67:0.328:2	0/1:1,63:31:64:0.984:2	./.	0/1:27,14:32:41:0.341:2	0/1:0,59:31:59:1.00:2
chr20	44048972	rs61753669	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:33:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	44052992	rs13217	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,32:32:62:0.516:2	0/1:21,19:31:40:0.475:2	0/1:0,17:32:17:1.00:2	0/1:59,31:30:90:0.344:2	0/1:81,52:30:133:0.391:2	0/1:52,58:31:110:0.527:2	0/1:70,57:30:127:0.449:2	./.	./.	./.	./.
chr20	44054349	rs707577	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,29:30:60:0.483:2	0/1:32,23:29:55:0.418:2	0/1:0,8:29:8:1.00:2	0/1:66,49:30:115:0.426:2	0/1:84,45:30:129:0.349:2	0/1:40,45:29:85:0.529:2	0/1:85,64:29:149:0.430:2	0/1:92,71:29:163:0.436:2	./.	./.	0/1:1,64:28:66:0.985:2
chr20	44099115	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:28:57:0.070:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	44141331	rs6032259	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,41:31:81:0.506:2	./.	0/1:0,82:30:82:1.00:2	0/1:47,35:31:82:0.427:2	0/1:27,31:28:58:0.534:2	./.
chr20	44141400	rs73305953	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,24:33:63:0.381:2	./.	./.	./.	./.	./.	./.	./.
chr20	44141411	rs16990288	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,19:31:58:0.328:2	./.	./.	./.	./.	./.	./.	./.
chr20	44163825	rs41304411	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,3:32:11:0.273:2	0/1:68,34:29:102:0.333:2	./.	./.	./.	./.	./.	0/1:55,45:31:100:0.450:2	./.
chr20	44163876	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,27:30:74:0.365:2	./.	./.	./.	./.	./.
chr20	44168040	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:28:66:0.061:2
chr20	44174423	rs765156	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,5:32:21:0.238:2	0/1:77,101:32:178:0.567:2	0/1:1,111:32:112:0.991:2	0/1:92,81:32:173:0.468:2	0/1:106,81:33:187:0.433:2	0/1:0,149:33:149:1.00:2	0/1:0,189:34:189:1.00:2	0/1:75,68:33:143:0.476:2	./.
chr20	44184375	rs2250860	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,60:32:116:0.517:2	./.	0/1:51,51:31:102:0.500:2	0/1:46,57:33:103:0.553:2	0/1:38,51:32:89:0.573:2	./.
chr20	44184498	rs2272955	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:31,37:31:68:0.544:2	0/1:22,19:29:41:0.463:2	./.	./.	./.	./.	./.	0/1:59,46:29:105:0.438:2	./.	./.	./.
chr20	44238741	rs2245898	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,45:32:46:0.978:2	0/1:0,36:32:36:1.00:2	0/1:5,8:33:13:0.615:2	0/1:25,35:32:60:0.583:2	./.	0/1:27,27:31:54:0.500:2	0/1:39,25:33:64:0.391:2	0/1:33,23:31:56:0.411:2	./.	0/1:18,23:31:41:0.561:2	0/1:0,72:31:72:1.00:2
chr20	44258532	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:154,4:33:158:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr20	44259549	rs2272961	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,57:31:57:1.00:2	./.	0/1:47,52:31:99:0.525:2	./.	0/1:49,37:32:86:0.430:2	./.	./.
chr20	44313542	rs192270179	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,53:32:126:0.421:2	./.	./.	./.	./.
chr20	44314609	rs232729	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,109:32:109:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,20:33:20:1.00:2	0/1:2,136:33:138:0.986:2	0/1:0,119:32:119:1.00:2	0/1:93,64:33:157:0.408:2	0/1:0,146:33:146:1.00:2	0/1:66,53:33:119:0.445:2	0/1:63,68:33:131:0.519:2	0/1:60,70:33:130:0.538:2	0/1:0,118:32:118:1.00:2
chr20	44333147	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:140,4:35:144:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr20	44352620	rs6017667	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,26:33:26:1.00:2	0/1:0,16:33:16:1.00:2	./.	0/1:15,17:32:32:0.531:2	0/1:15,7:32:22:0.318:2	0/1:12,9:32:22:0.429:2	0/1:9,11:32:20:0.550:2	0/1:20,7:33:27:0.259:2	./.	0/1:16,17:33:33:0.515:2	0/1:0,42:33:42:1.00:2
chr20	44378577	rs380421	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,9:31:16:0.563:2	0/1:62,55:30:117:0.470:2	0/1:46,47:29:93:0.505:2	0/1:59,56:29:115:0.487:2	0/1:36,47:30:83:0.566:2	0/1:75,62:30:137:0.453:2	0/1:2,154:31:157:0.987:2	0/1:83,35:30:118:0.297:2	./.
chr20	44417643	rs6032537	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,6:31:19:0.316:2	0/1:108,74:30:183:0.407:2	0/1:2,128:30:130:0.985:2	0/1:102,69:29:171:0.404:2	0/1:110,64:30:174:0.368:2	0/1:106,86:30:194:0.448:2	0/1:0,146:31:146:1.00:2	0/1:80,47:30:128:0.370:2	./.
chr20	44417675	rs6032538	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,4:27:21:0.190:2	0/1:105,67:29:172:0.390:2	0/1:1,114:29:115:0.991:2	0/1:88,68:30:156:0.436:2	0/1:108,61:30:169:0.361:2	0/1:93,72:30:165:0.436:2	0/1:0,133:30:133:1.00:2	0/1:90,49:30:139:0.353:2	./.
chr20	44418564	rs3746493	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:31:9:0.444:2	0/1:75,69:32:144:0.479:2	0/1:0,162:32:162:1.00:2	0/1:66,65:32:131:0.496:2	0/1:73,88:32:161:0.547:2	0/1:83,83:32:166:0.500:2	0/1:2,158:32:160:0.988:2	0/1:70,50:32:120:0.417:2	./.
chr20	44452697	rs4629	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,7:33:8:0.875:2	./.	0/1:1,106:32:107:0.991:2	0/1:55,36:32:91:0.396:2	0/1:60,53:32:113:0.469:2	0/1:62,45:32:107:0.421:2	0/1:43,40:33:83:0.482:2	0/1:32,28:32:60:0.467:2	./.
chr20	44462924	rs57799507	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,4:27:5:0.800:2	./.	./.	./.	./.	./.	./.
chr20	44469290	rs4638862	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	0/1:23,26:30:49:0.531:2	0/1:15,12:30:28:0.444:2	0/1:22,20:30:42:0.476:2	0/1:26,32:31:58:0.552:2	0/1:36,17:30:53:0.321:2	0/1:12,21:30:33:0.636:2	./.
chr20	44470575	rs148674138	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:31:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	44470676	rs3848713	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,12:33:15:0.800:2	0/1:3,5:33:8:0.625:2	0/1:11,7:31:18:0.389:2	0/1:12,6:29:18:0.333:2	0/1:8,7:32:15:0.467:2	0/1:7,13:32:20:0.650:2	0/1:6,6:28:12:0.500:2	./.
chr20	44505830	rs61733888	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,60:32:115:0.522:2	./.	./.	./.	./.	./.	./.	./.
chr20	44505973	rs2903808	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,10:33:18:0.556:2	0/1:68,57:32:125:0.456:2	0/1:62,73:32:135:0.541:2	0/1:60,43:31:103:0.417:2	0/1:76,68:32:144:0.472:2	0/1:55,62:31:117:0.530:2	0/1:76,58:32:134:0.433:2	0/1:49,49:32:98:0.500:2	./.
chr20	44506295	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:31:68:0.059:2	./.	./.	./.
chr20	44506418	rs1045493	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	0/1:59,42:32:101:0.416:2	0/1:45,30:31:76:0.400:2	0/1:51,45:33:96:0.469:2	0/1:43,50:32:93:0.538:2	0/1:50,59:32:109:0.541:2	0/1:35,32:32:67:0.478:2	./.
chr20	44506661	rs17446462	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,28:31:54:0.519:2	./.	./.	./.	./.	./.	./.	./.
chr20	44511627	rs11086984	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,81:30:163:0.497:2	./.	0/1:87,85:31:172:0.494:2	./.	0/1:81,49:31:130:0.377:2	./.
chr20	44512744	rs111450209	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,7:22:116:0.060:2	0/1:69,7:20:76:0.092:2	./.	./.	./.	./.	./.
chr20	44512979	.	G	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,13:18:62:0.210:2	0/1:41,10:17:51:0.196:2	0/1:39,9:20:48:0.188:2	./.	0/1:65,11:17:76:0.145:2	0/1:75,8:17:83:0.096:2	./.	0/1:49,6:21:55:0.109:2
chr20	44512996	rs11483492	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,14:16:37:0.389:2	0/1:23,12:17:35:0.343:2	0/1:21,11:13:32:0.344:2	./.	0/1:32,11:16:43:0.256:2	0/1:29,16:14:45:0.356:2	./.	0/1:23,9:20:32:0.281:2
chr20	44513003	rs1133368	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,7:23:29:0.241:2	0/1:19,12:27:31:0.387:2	0/1:6,7:27:13:0.538:2	0/1:26,7:27:33:0.212:2	0/1:32,4:32:36:0.111:2	0/1:13,8:25:21:0.381:2	./.
chr20	44513132	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.
chr20	44513252	rs138690365	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,16:30:31:0.516:2	./.	./.	./.	./.	./.	./.	./.
chr20	44513289	rs6094223	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:33:9:0.444:2	0/1:42,30:32:72:0.417:2	0/1:2,32:30:34:0.941:2	0/1:63,21:32:84:0.250:2	0/1:54,24:32:78:0.308:2	0/1:42,19:32:61:0.311:2	0/1:79,27:30:106:0.255:2	0/1:67,32:32:99:0.323:2	./.
chr20	44513357	rs59782893	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,9:30:19:0.474:2	0/1:65,58:31:123:0.472:2	0/1:2,42:30:44:0.955:2	0/1:77,39:31:116:0.336:2	0/1:63,26:31:89:0.292:2	0/1:57,38:31:95:0.400:2	0/1:102,32:31:134:0.239:2	0/1:91,47:31:138:0.341:2	./.
chr20	44515559	rs3827040	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,49:32:107:0.458:2	./.	./.	./.	./.	./.	./.
chr20	44520261	rs181943893	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.	./.	./.	./.	./.	./.
chr20	44520579	rs742035	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,16:30:30:0.533:2	./.	./.	./.	./.	./.	./.	./.
chr20	44523547	rs2075961	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,5:30:13:0.385:2	0/1:70,49:31:119:0.412:2	0/1:0,115:30:115:1.00:2	0/1:58,58:30:116:0.500:2	0/1:77,53:30:130:0.408:2	0/1:81,66:31:147:0.449:2	0/1:48,55:31:103:0.534:2	0/1:49,42:30:91:0.462:2	./.
chr20	44578674	rs16990951	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:29:10:0.400:2	./.	./.	./.	0/1:59,33:32:92:0.359:2	./.	./.	./.	./.
chr20	44578961	rs3746503	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:31:9:0.667:2	./.	./.	./.	0/1:64,32:29:96:0.333:2	./.	./.	./.	./.
chr20	44579115	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,45:29:81:0.556:2	0/1:27,33:29:60:0.550:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	44587908	rs190178539	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,8:27:22:0.364:2	./.	./.	./.	./.
chr20	44596207	rs6032606	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,174:31:174:1.00:2	0/1:0,113:31:113:1.00:2	0/1:0,43:32:43:1.00:2	0/1:108,64:32:172:0.372:2	0/1:104,68:31:172:0.395:2	0/1:0,166:32:166:1.00:2	0/1:0,172:32:172:1.00:2	0/1:0,159:31:159:1.00:2	0/1:0,161:32:161:1.00:2	0/1:0,166:31:166:1.00:2	0/1:0,160:31:160:1.00:2
chr20	44596545	rs3848719	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,25:30:49:0.510:2	0/1:19,15:28:34:0.441:2	0/1:19,26:29:45:0.578:2	./.	0/1:1,44:30:45:0.978:2	0/1:13,15:31:28:0.536:2	0/1:19,11:29:30:0.367:2	0/1:11,16:30:27:0.593:2
chr20	44640225	rs17576	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:26,24:28:50:0.480:2	0/1:18,5:28:23:0.217:2	0/1:0,10:29:10:1.00:2	./.	./.	0/1:38,38:29:76:0.500:2	0/1:43,28:27:71:0.394:2	./.	./.	./.	./.
chr20	44640275	rs144098289	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,36:31:68:0.529:2
chr20	44641091	rs201927079	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,25:31:64:0.391:2	./.	./.
chr20	44642406	rs2250889	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:29:77:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,14:30:14:1.00:2	0/1:51,55:30:106:0.519:2	0/1:55,25:29:80:0.313:2	0/1:0,101:29:101:1.00:2	0/1:1,59:29:60:0.983:2	0/1:0,107:30:107:1.00:2	0/1:0,83:30:83:1.00:2	0/1:0,92:29:92:1.00:2	0/1:1,120:29:121:0.992:2
chr20	44642833	rs13969	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	0/1:0,5:28:5:1.00:2	./.	./.	./.
chr20	44643111	rs17577	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,12:33:21:0.571:2	0/1:11,3:31:14:0.214:2	./.	./.	./.	0/1:24,29:31:53:0.547:2	./.	./.	./.	./.	./.
chr20	44644965	rs13925	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:33,37:31:70:0.529:2	0/1:28,17:31:45:0.378:2	0/1:9,12:31:21:0.571:2	./.	./.	0/1:41,44:31:85:0.518:2	./.	./.	./.	./.	./.
chr20	44664493	rs77659338	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,70:31:185:0.378:2	0/1:66,80:32:146:0.548:2	./.	./.
chr20	44678348	rs6032635	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:32:81:1.00:2	0/1:0,37:33:37:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,115:32:116:1.00:2	0/1:0,116:32:116:1.00:2	0/1:0,113:32:114:1.00:2	0/1:0,127:33:127:1.00:2	0/1:0,125:32:125:1.00:2	0/1:0,98:33:98:1.00:2	0/1:1,75:32:76:0.987:2	0/1:0,81:33:81:1.00:2
chr20	44680412	rs3746522	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,27:30:49:0.551:2	./.	0/1:24,21:32:45:0.467:2	./.	0/1:14,32:32:47:0.696:2	0/1:26,29:32:55:0.527:2	0/1:27,17:31:44:0.386:2
chr20	44680424	rs79522550	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,21:31:36:0.583:2
chr20	44680493	rs17344810	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,9:29:21:0.429:2	./.	./.	0/1:4,7:31:11:0.636:2	./.	./.
chr20	44691350	rs1537028	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,10:26:14:0.714:2	0/1:3,159:30:163:0.981:2	0/1:112,69:29:181:0.381:2	0/1:78,75:30:154:0.490:2	0/1:105,81:30:186:0.435:2	0/1:2,144:29:146:0.986:2	./.	0/1:97,81:29:178:0.455:2	./.
chr20	44746982	rs1883832	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,30:33:60:0.500:2	0/1:31,23:32:54:0.426:2	0/1:0,10:32:10:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,107:31:108:1.00:2	0/1:0,84:32:84:1.00:2	0/1:53,48:31:101:0.475:2	0/1:0,86:31:86:1.00:2	./.	0/1:39,26:31:65:0.400:2	./.
chr20	44806643	rs34603854	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,6:30:27:0.222:2	./.	./.	0/1:76,114:31:190:0.600:2	0/1:50,80:32:130:0.615:2	0/1:72,114:31:186:0.613:2	./.	./.	./.
chr20	44806727	rs35585191	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,14:27:33:0.424:2	./.	./.	0/1:69,88:29:157:0.561:2	0/1:77,104:29:181:0.575:2	0/1:81,62:29:143:0.434:2	./.	./.	./.
chr20	44841751	rs150940098	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:35:186:0.022:2	./.
chr20	44979088	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,38:32:75:0.507:2	./.	./.	./.	./.
chr20	44979477	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:29:102:0.039:2	./.	./.
chr20	44979491	rs371404051	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:32:100:0.040:2	./.	./.
chr20	44983517	rs12480667	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,24:32:48:0.500:2	0/1:11,9:32:20:0.450:2	0/1:0,4:33:4:1.00:2	0/1:27,15:32:42:0.357:2	./.	./.	0/1:27,15:31:42:0.357:2	0/1:0,36:32:36:1.00:2	./.	./.	./.
chr20	44983844	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,51:31:95:0.537:2	./.	./.	./.	./.	./.	./.	./.
chr20	44987318	rs1044369	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,14:34:27:0.519:2	0/1:18,6:32:24:0.250:2	0/1:0,7:34:7:1.00:2	0/1:32,21:32:53:0.396:2	./.	0/1:26,25:32:51:0.490:2	0/1:29,17:32:46:0.370:2	0/1:1,58:32:59:0.983:2	./.	./.	./.
chr20	44996182	rs2257495	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:30:48:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,13:30:13:1.00:2	0/1:1,99:30:100:0.990:2	0/1:0,100:30:100:1.00:2	0/1:0,115:30:115:1.00:2	0/1:0,121:30:123:1.00:2	0/1:0,125:30:125:1.00:2	0/1:0,107:31:107:1.00:2	0/1:0,90:30:90:1.00:2	0/1:0,99:30:101:1.00:2
chr20	45017786	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:33:134:0.030:2	./.	./.	./.
chr20	45017796	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:30:119:0.034:2	./.	./.	./.
chr20	45017855	rs201165179	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:33:83:0.048:2	./.	./.	./.
chr20	45130448	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:115,4:31:119:0.034:2	./.	./.	./.	./.	./.	./.
chr20	45170213	rs847078	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,34:33:83:0.410:2	./.	0/1:53,39:33:92:0.424:2	0/1:32,30:32:62:0.484:2	./.	0/1:64,35:33:99:0.354:2	./.	./.
chr20	45174026	rs202396	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,19:32:38:0.500:2	./.	0/1:14,14:31:28:0.500:2	0/1:40,9:29:49:0.184:2	./.	0/1:17,24:30:41:0.585:2	./.	./.
chr20	45174217	rs369681916	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,3:34:74:0.041:2
chr20	45174659	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,28:29:40:0.700:2	./.	./.	./.	./.	./.	./.	./.
chr20	45194904	rs202391	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:34,25:30:59:0.424:2	0/1:22,21:32:43:0.488:2	./.	0/1:1,106:31:107:0.991:2	./.	./.	0/1:63,83:31:146:0.568:2	./.	./.	./.	./.
chr20	45194957	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:33:130:0.031:2	./.	./.
chr20	45204266	rs1880898	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,8:32:17:0.471:2	./.	0/1:3,127:31:130:0.977:2	0/1:49,70:31:120:0.588:2	0/1:76,49:32:125:0.392:2	0/1:81,73:32:154:0.474:2	0/1:68,55:33:123:0.447:2	0/1:38,37:31:75:0.493:2	./.
chr20	45242269	rs2273024	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,9:32:10:0.900:2	0/1:64,56:33:120:0.467:2	0/1:0,166:32:167:1.00:2	0/1:56,78:31:134:0.582:2	0/1:93,88:32:181:0.486:2	0/1:2,160:32:162:0.988:2	0/1:70,58:32:128:0.453:2	./.	./.
chr20	45315786	rs34983477	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,7:31:23:0.304:2	0/1:13,4:33:17:0.235:2	./.	./.	./.	./.
chr20	45354291	rs2235491	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,33:29:56:0.600:2	./.	./.	./.	0/1:21,35:28:56:0.625:2	./.	0/1:0,32:30:33:1.00:2	./.
chr20	45717954	rs866937	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,30:31:58:0.517:2	./.	0/1:50,28:31:78:0.359:2	./.	0/1:35,24:32:59:0.407:2	0/1:37,43:31:80:0.538:2
chr20	45816733	rs41282800	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:30:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	45816757	rs3818015	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,41:32:96:0.427:2	./.	./.	./.
chr20	45853037	rs2664544	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,105:32:105:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,22:33:22:1.00:2	0/1:1,147:32:148:0.993:2	0/1:0,184:32:184:1.00:2	0/1:0,140:32:140:1.00:2	0/1:3,172:33:175:0.983:2	0/1:0,166:32:166:1.00:2	0/1:0,143:33:143:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,98:32:98:1.00:2
chr20	45867852	rs2275801	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,4:28:13:0.308:2	./.	./.	./.
chr20	45878121	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:30:86:0.047:2	./.
chr20	46256424	rs6094752	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,47:32:110:0.427:2
chr20	46262296	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:31:87:0.046:2	./.	./.	./.
chr20	46264888	rs2230782	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,31:32:62:0.500:2	0/1:14,15:32:29:0.517:2	./.	0/1:30,28:32:58:0.483:2	0/1:21,25:33:46:0.543:2	./.	0/1:38,4:34:42:0.095:2	./.	./.	./.	./.
chr20	46265416	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:29:194:0.026:2	./.	./.
chr20	46268493	rs2076546	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,32:29:53:0.604:2	./.	./.	./.	0/1:35,34:31:70:0.493:2
chr20	46279827	rs6018623	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,44:30:111:0.396:2	./.	./.	./.	0/1:50,34:30:84:0.405:2
chr20	46279866	rs1132443	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,37:32:96:0.385:2	./.	./.	./.	0/1:45,29:32:74:0.392:2
chr20	46290316	rs2076549	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,40:29:103:0.388:2	0/1:71,63:28:134:0.470:2	./.	0/1:80,73:29:153:0.477:2	0/1:73,47:29:120:0.392:2	0/1:61,44:29:105:0.419:2	./.
chr20	46292275	rs200041967	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,32:30:85:0.376:2
chr20	46294864	rs13044281	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:98,28:32:126:0.222:2	0/1:49,15:31:64:0.234:2	./.	./.	0/1:140,30:32:170:0.176:2	0/1:144,30:32:174:0.172:2	0/1:149,33:33:182:0.181:2	0/1:149,39:31:188:0.207:2	./.	0/1:125,4:33:129:0.031:2	0/1:85,22:31:107:0.206:2
chr20	46295036	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:103,8:32:111:0.072:2	./.	./.	0/1:139,9:29:148:0.061:2	0/1:183,5:29:188:0.027:2	./.	./.	./.	0/1:119,6:28:125:0.048:2	0/1:119,7:30:126:0.056:2	0/1:151,9:28:160:0.056:2
chr20	46300971	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,4:32:98:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr20	46365571	rs3810526	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,178:31:181:0.989:2	0/1:0,143:30:143:1.00:2	0/1:1,58:30:59:0.983:2	0/1:103,92:30:195:0.472:2	0/1:1,189:31:190:0.995:2	0/1:95,99:30:194:0.510:2	0/1:108,86:30:195:0.443:2	0/1:113,80:30:193:0.415:2	0/1:2,178:31:180:0.989:2	0/1:107,89:30:196:0.454:2	0/1:0,184:30:184:1.00:2
chr20	46365636	rs56218501	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:86,77:30:164:0.472:2	0/1:65,77:30:142:0.542:2	0/1:16,26:29:42:0.619:2	0/1:101,91:29:192:0.474:2	./.	0/1:89,100:30:189:0.529:2	0/1:97,73:30:170:0.429:2	0/1:88,102:29:190:0.537:2	./.	0/1:61,88:30:149:0.591:2	0/1:77,91:30:168:0.542:2
chr20	46385955	rs61730618	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,26:32:47:0.553:2	./.
chr20	47244450	rs6125402	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,91:31:152:0.599:2	./.	0/1:49,42:31:91:0.462:2	./.	./.	./.	0/1:28,37:31:65:0.569:2
chr20	47246077	rs3936192	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,33:32:79:0.418:2	./.	0/1:39,41:32:80:0.513:2	./.	./.	./.	0/1:24,30:32:54:0.556:2
chr20	47246127	rs3936193	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,23:31:63:0.371:2	./.	0/1:29,38:31:67:0.567:2	./.	./.	./.	0/1:31,21:29:52:0.404:2
chr20	47249116	rs4487145	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,33:31:81:0.407:2	./.	0/1:77,27:31:104:0.260:2	./.	./.	./.	0/1:37,24:31:61:0.393:2
chr20	47249170	rs4487146	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,22:30:65:0.344:2	./.	0/1:77,31:31:108:0.287:2	./.	./.	./.	0/1:47,23:32:70:0.329:2
chr20	47253043	rs11553083	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,21:29:21:1.00:2	0/1:0,15:29:15:1.00:2	./.	./.	./.	0/1:3,11:28:14:0.786:2	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.
chr20	47253150	rs2664521	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:28:56:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,73:29:73:1.00:2	0/1:0,46:28:46:1.00:2	0/1:0,69:28:69:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,51:29:51:1.00:2	0/1:0,51:29:51:1.00:2	0/1:0,40:29:40:1.00:2	0/1:0,20:29:20:1.00:2
chr20	47256372	rs143830265	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,81:30:163:0.497:2
chr20	47258763	rs16993997	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,7:32:17:0.412:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	47261017	rs6066802	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,7:33:10:0.700:2	./.	./.	./.	0/1:42,25:32:67:0.373:2	./.	./.	./.	0/1:30,34:31:64:0.531:2
chr20	47262549	rs6012504	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,32:32:70:0.457:2	./.	./.
chr20	47267480	rs41283556	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:31:15:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	47267940	rs61748372	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:32:15:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	47269233	rs41283558	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:31:5:0.800:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	47273726	rs55904123	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	47274672	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:27:60:0.067:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	47307618	rs3746820	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,77:32:151:0.510:2	0/1:79,55:31:134:0.410:2	./.	./.	./.	0/1:108,85:30:193:0.440:2	0/1:96,96:31:192:0.500:2	./.	0/1:106,84:32:190:0.442:2	./.	./.
chr20	47351095	rs6122720	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,78:31:161:0.484:2	./.	./.	./.	0/1:48,43:31:91:0.473:2
chr20	47361610	rs55952330	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,36:32:57:0.632:2
chr20	47626847	rs2295580	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,36:33:86:0.419:2	./.	0/1:27,33:32:60:0.550:2	./.	./.	./.	./.	0/1:19,22:33:41:0.537:2
chr20	47630449	rs2281582	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,5:32:17:0.294:2	./.	./.	./.	./.	./.	./.	0/1:0,83:32:83:1.00:2	./.
chr20	47685320	rs2227946	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,76:33:170:0.447:2	./.	0/1:72,71:32:143:0.497:2	./.	./.	./.	./.	0/1:91,73:33:166:0.445:2
chr20	47705912	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,3:36:83:0.036:2	./.	./.	./.	./.	./.
chr20	47732365	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:33:171:0.023:2	./.	./.
chr20	47770564	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:32:184:0.022:2
chr20	47839568	rs187861096	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,10:30:26:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	47841660	rs11553387	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:71,71:28:142:0.500:2	./.	./.	./.	./.	./.	./.	0/1:90,77:29:167:0.461:2
chr20	47846778	rs374821878	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,19:30:50:0.380:2	./.	./.	./.	./.
chr20	47850182	rs238148	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,36:31:36:1.00:2	0/1:0,20:32:20:1.00:2	./.	0/1:0,38:31:38:1.00:2	0/1:25,17:31:42:0.405:2	0/1:0,45:30:46:1.00:2	0/1:19,19:30:38:0.500:2	0/1:0,48:32:48:1.00:2	0/1:0,53:32:53:1.00:2	./.	0/1:0,41:31:41:1.00:2
chr20	47858357	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,4:32:113:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr20	47859217	rs1130146	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:31:60:1.00:2	0/1:0,42:31:42:1.00:2	0/1:1,5:30:6:0.833:2	0/1:50,34:31:84:0.405:2	0/1:29,21:31:50:0.420:2	0/1:49,40:30:89:0.449:2	0/1:31,23:30:54:0.426:2	0/1:2,76:31:78:0.974:2	0/1:56,50:32:106:0.472:2	./.	0/1:74,43:31:118:0.368:2
chr20	47865372	rs238208	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,36:31:36:1.00:2	0/1:3,7:31:10:0.700:2	0/1:0,90:31:90:1.00:2	0/1:69,57:31:126:0.452:2	0/1:2,100:31:102:0.980:2	0/1:56,63:31:119:0.529:2	0/1:0,119:31:119:1.00:2	0/1:0,120:32:120:1.00:2	./.	0/1:0,86:32:86:1.00:2
chr20	47865509	rs238209	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,99:31:99:1.00:2	0/1:0,77:31:77:1.00:2	0/1:19,11:31:30:0.367:2	0/1:2,168:31:170:0.988:2	0/1:118,76:30:194:0.392:2	0/1:3,177:30:180:0.983:2	0/1:116,74:31:190:0.389:2	0/1:0,185:31:187:1.00:2	0/1:0,152:31:153:1.00:2	./.	0/1:0,142:31:143:1.00:2
chr20	47865556	rs372966340	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,55:30:138:0.399:2	./.	./.	./.	./.	./.	./.	./.
chr20	47865784	rs6512577	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,68:28:140:0.486:2	./.	./.	./.	./.	./.	./.	0/1:71,62:29:133:0.466:2
chr20	47872377	rs238221	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,93:32:93:1.00:2	0/1:0,51:32:51:1.00:2	0/1:13,3:31:16:0.188:2	0/1:0,115:31:115:1.00:2	0/1:75,47:32:122:0.385:2	0/1:2,126:32:128:0.984:2	0/1:75,74:31:149:0.497:2	0/1:1,159:32:160:0.994:2	0/1:0,111:32:111:1.00:2	./.	0/1:0,123:32:123:1.00:2
chr20	47873952	rs80037592	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:54,12:19:66:0.182:2	./.	./.	./.	0/1:87,14:18:101:0.139:2	0/1:85,11:19:96:0.115:2	0/1:89,11:15:100:0.110:2	./.	0/1:70,10:16:80:0.125:2	./.	0/1:69,8:17:77:0.104:2
chr20	47874005	rs3021	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,73:31:139:0.525:2	./.	./.	./.	0/1:190,4:32:194:0.021:2	./.	./.	0/1:52,68:31:120:0.567:2
chr20	47881392	rs139799273	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,68:32:136:0.500:2	./.	./.	./.
chr20	47886684	rs57950	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,49:31:49:1.00:2	0/1:0,17:32:17:1.00:2	./.	0/1:0,46:32:46:1.00:2	0/1:16,15:30:31:0.484:2	0/1:0,28:29:28:1.00:2	0/1:14,12:31:26:0.462:2	0/1:0,40:31:40:1.00:2	0/1:0,29:32:29:1.00:2	./.	0/1:0,46:32:46:1.00:2
chr20	47887250	rs147045723	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,36:31:92:0.396:2	0/1:27,18:31:45:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	47896929	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:120,4:33:125:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr20	48129706	rs5629	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,36:32:36:1.00:2	0/1:23,24:31:47:0.511:2	./.	./.	./.	./.	./.
chr20	48140682	rs5628	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,41:30:95:0.432:2
chr20	48252914	rs235035	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:101,85:32:186:0.457:2	./.	./.	0/1:95,83:31:178:0.466:2	./.	./.	./.
chr20	48257149	rs421801	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:33:35:1.00:2	0/1:0,39:32:39:1.00:2	0/1:7,4:28:11:0.364:2	0/1:0,51:32:51:1.00:2	0/1:0,28:31:28:1.00:2	0/1:28,21:31:49:0.429:2	0/1:32,16:32:48:0.333:2	0/1:64,16:33:80:0.200:2	0/1:2,38:33:40:0.950:2	0/1:0,31:33:31:1.00:2	0/1:1,54:32:55:0.982:2
chr20	48259034	rs2235855	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,23:33:56:0.411:2	0/1:16,17:33:33:0.515:2	./.	0/1:29,29:33:58:0.500:2	0/1:1,36:33:37:0.973:2	0/1:28,36:33:64:0.563:2	0/1:27,26:33:53:0.491:2	0/1:27,31:33:58:0.534:2	0/1:0,43:33:43:1.00:2	0/1:0,40:33:40:1.00:2	0/1:28,27:32:55:0.491:2
chr20	48429462	rs76846045	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.
chr20	48429508	rs58677849	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	./.	./.	./.	0/1:7,3:33:10:0.300:2	./.	./.
chr20	48429509	rs6020064	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	./.	./.	./.	0/1:7,3:32:10:0.300:2	./.	./.
chr20	48466166	rs6012755	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,72:30:182:0.396:2	./.	./.	./.	./.	./.
chr20	48491258	rs542234	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,167:32:167:1.00:2	0/1:0,101:32:101:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,175:33:175:1.00:2	0/1:1,180:33:181:0.994:2	0/1:0,161:33:161:1.00:2	0/1:0,167:33:167:1.00:2	0/1:0,179:33:179:1.00:2	0/1:0,190:34:190:1.00:2	0/1:0,175:33:175:1.00:2	0/1:98,86:33:184:0.467:2
chr20	48500560	rs145892627	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,43:31:99:0.434:2	./.	./.	./.	./.
chr20	48522330	rs495337	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:5,144:29:149:0.966:2	0/1:2,118:30:120:0.983:2	0/1:27,17:29:44:0.386:2	./.	0/1:82,94:28:176:0.534:2	0/1:3,165:29:168:0.982:2	0/1:93,85:27:178:0.478:2	0/1:3,163:29:167:0.982:2	0/1:99,77:30:177:0.438:2	0/1:87,79:29:166:0.476:2	./.
chr20	48522585	rs492702	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,11:30:11:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,2:28:2:1.00:2	./.	0/1:8,15:30:23:0.652:2	0/1:0,14:31:14:1.00:2	0/1:4,3:33:9:0.429:2	0/1:0,19:31:19:1.00:2	0/1:0,16:33:16:1.00:2	0/1:5,8:34:13:0.615:2	./.
chr20	48524827	rs2769982	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,59:29:59:1.00:2	0/1:1,32:28:33:0.970:2	0/1:6,4:30:10:0.400:2	./.	0/1:46,52:29:98:0.531:2	0/1:0,67:29:67:1.00:2	0/1:34,32:28:66:0.485:2	0/1:1,78:28:79:0.987:2	0/1:0,53:29:53:1.00:2	0/1:31,25:29:56:0.446:2	./.
chr20	48600557	rs4647959	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,7:32:16:0.438:2
chr20	48600631	rs4647958	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,20:33:34:0.588:2
chr20	48600809	rs1063210	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,54:31:125:0.432:2
chr20	48699441	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,8:32:18:0.444:2
chr20	48729677	rs126907	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,2:33:2:1.00:2	./.	0/1:0,3:30:3:1.00:2	./.	0/1:0,3:30:3:1.00:2	./.	./.	./.	./.	0/1:0,6:32:6:1.00:2
chr20	48746189	rs6122878	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,44:30:102:0.431:2	./.	./.	./.	./.	./.	0/1:0,62:32:62:1.00:2	0/1:42,42:31:84:0.500:2
chr20	48770159	rs232733	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:33:4:1.00:2	./.	./.
chr20	48808011	rs4253439	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:33:5:0.600:2	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	0/1:0,2:27:2:1.00:2	./.
chr20	49195061	rs2230605	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,48:33:112:0.429:2	./.	./.	./.	./.
chr20	49209702	rs373335874	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,4:32:13:0.308:2	./.
chr20	49212715	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.
chr20	49214156	rs6020624	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,33:30:63:0.524:2	0/1:18,14:29:32:0.438:2	0/1:11,4:31:15:0.267:2	0/1:49,52:30:101:0.515:2	0/1:71,39:29:110:0.355:2	0/1:50,35:30:85:0.412:2	0/1:0,90:30:90:1.00:2	0/1:79,55:29:134:0.410:2	0/1:38,38:30:76:0.500:2	0/1:0,64:29:64:1.00:2	0/1:0,54:30:54:1.00:2
chr20	49214188	rs35976890	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,59:30:137:0.431:2	./.	0/1:44,29:30:73:0.397:2	./.
chr20	49236619	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,4:29:77:0.052:2	./.	./.	./.	./.	./.	./.	./.
chr20	49411698	rs2272962	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:32:4:1.00:2	0/1:0,4:30:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.
chr20	49458412	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,48:29:71:0.676:2	./.
chr20	49508683	rs1062651	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,11:30:20:0.550:2	./.	./.	0/1:77,45:30:122:0.369:2	./.	./.	./.	./.	./.
chr20	49508851	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:192,4:33:196:0.020:2	./.	./.	./.	./.	./.	./.
chr20	49509175	rs6096168	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,6:30:14:0.429:2	./.	./.	0/1:54,39:30:93:0.419:2	./.	./.	./.	./.	./.
chr20	49509201	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:30:121:0.033:2	./.	./.	./.	./.	./.
chr20	49552787	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,3:28:9:0.333:2	./.	./.	./.	./.	./.	./.
chr20	49620783	rs1054268	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,113:30:113:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,15:28:15:1.00:2	0/1:0,155:30:156:1.00:2	0/1:0,142:30:142:1.00:2	0/1:0,171:29:171:1.00:2	0/1:1,145:30:146:0.993:2	0/1:87,84:30:171:0.491:2	0/1:0,145:31:145:1.00:2	0/1:63,88:30:151:0.583:2	0/1:2,127:30:130:0.984:2
chr20	49621149	rs6122993	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:33:3:1.00:2	./.	./.	./.	0/1:0,2:33:2:1.00:2	0/1:0,7:30:7:1.00:2	./.	0/1:0,2:31:2:1.00:2	0/1:0,4:34:4:1.00:2	./.	./.
chr20	50015213	rs56224340	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,21:33:47:0.447:2	./.	./.	./.	./.	./.
chr20	50049079	rs145906106	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,20:32:42:0.476:2	./.	./.	./.	./.	./.	./.
chr20	50071158	rs146686251	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,72:31:128:0.563:2	./.	./.	./.	./.	./.
chr20	50092027	rs6013193	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,177:31:181:0.978:2	0/1:1,113:32:114:0.991:2	0/1:25,14:32:39:0.359:2	0/1:102,89:32:194:0.466:2	./.	0/1:95,96:32:191:0.503:2	0/1:115,80:33:196:0.410:2	./.	0/1:100,88:32:188:0.468:2	./.	./.
chr20	50092091	rs145327846	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,80:32:167:0.479:2	./.	./.
chr20	50140459	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,12:33:18:0.667:2	./.	./.
chr20	50140627	rs3746420	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:33:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	50140629	rs140836558	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,8:32:22:0.364:2	./.	./.
chr20	50217828	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:29:62:0.065:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	50235577	rs2295004	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,40:31:79:0.506:2	./.	./.	./.	./.	./.
chr20	50273570	rs150632110	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,3:32:27:0.111:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	50287736	rs2255341	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:37,18:32:55:0.327:2	0/1:19,18:32:37:0.486:2	./.	0/1:39,39:31:78:0.500:2	./.	0/1:35,34:31:69:0.493:2	0/1:38,50:32:88:0.568:2	0/1:66,39:32:105:0.371:2	0/1:0,66:32:66:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,67:32:67:1.00:2
chr20	50287790	rs2255342	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:30:51:1.00:2	0/1:0,32:30:32:1.00:2	0/1:1,3:30:4:0.750:2	0/1:1,51:31:52:0.981:2	0/1:0,69:31:69:1.00:2	0/1:34,33:29:67:0.493:2	0/1:35,32:31:67:0.478:2	0/1:1,97:30:98:0.990:2	0/1:0,54:32:54:1.00:2	0/1:1,56:31:57:0.982:2	0/1:0,63:31:63:1.00:2
chr20	50305595	rs6512744	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,28:31:50:0.560:2	./.	./.	./.	./.
chr20	50329520	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,22:31:178:0.124:2	./.	./.	./.	./.
chr20	50405502	rs17802735	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:43,39:34:82:0.476:2	0/1:28,16:33:44:0.364:2	0/1:6,11:33:17:0.647:2	./.	./.	./.	./.	0/1:76,74:32:150:0.493:2	./.	./.	0/1:50,29:32:79:0.367:2
chr20	50406630	rs6091375	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,89:32:194:0.459:2	./.	./.	./.	./.
chr20	50406985	rs13043248	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,34:31:61:0.557:2	0/1:21,28:32:49:0.571:2	./.	./.	./.	./.	./.
chr20	50407162	rs6021437	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:91,93:30:184:0.505:2	0/1:62,56:29:118:0.475:2	./.	0/1:110,77:30:187:0.412:2	./.	0/1:190,5:31:195:0.026:2	0/1:113,78:30:191:0.408:2	0/1:106,82:30:188:0.436:2	0/1:1,175:30:176:0.994:2	0/1:3,192:29:195:0.985:2	0/1:96,84:30:180:0.467:2
chr20	50407502	rs6126344	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:10,11:28:21:0.524:2	0/1:8,6:29:14:0.429:2	./.	0/1:19,6:30:25:0.240:2	./.	./.	0/1:20,4:29:24:0.167:2	0/1:16,10:29:26:0.385:2	0/1:2,19:32:21:0.905:2	0/1:0,16:31:16:1.00:2	0/1:15,4:28:19:0.211:2
chr20	50407966	rs13038893	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:23,14:31:37:0.378:2	0/1:4,13:32:17:0.765:2	0/1:4,3:32:7:0.429:2	./.	0/1:21,32:30:53:0.604:2	0/1:16,18:31:34:0.529:2	0/1:20,21:32:41:0.512:2	0/1:31,17:32:48:0.354:2	./.	./.	0/1:26,23:31:49:0.469:2
chr20	50408482	rs6013281	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:28:45:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,97:29:97:1.00:2	0/1:0,84:29:84:1.00:2	0/1:0,68:29:68:1.00:2	0/1:0,74:28:74:1.00:2	0/1:0,113:29:113:1.00:2	0/1:0,83:30:83:1.00:2	0/1:0,89:29:89:1.00:2	0/1:0,49:28:49:1.00:2
chr20	50713983	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,11:12:38:0.289:2	./.	0/1:21,7:17:28:0.250:2	./.	./.	./.	./.	./.
chr20	50769183	rs3746415	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,6:32:12:0.500:2	0/1:6,6:32:12:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	50769379	rs3746414	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,39:31:86:0.453:2	0/1:33,21:31:54:0.389:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	50769502	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:33:40:0.100:2	./.
chr20	50769549	rs3746413	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,13:28:43:0.302:2	0/1:19,7:30:26:0.269:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	50769783	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:187,5:33:192:0.026:2	./.	./.	./.	./.	./.	./.
chr20	50769811	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,59:32:195:0.303:2
chr20	50803444	rs36027430	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,23:32:24:0.958:2	./.	0/1:81,90:32:171:0.526:2	./.	./.	./.	./.	./.	./.
chr20	50803459	rs34252344	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,64:33:142:0.451:2	./.	./.
chr20	50803573	rs34351592	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:31:9:1.00:2	./.	0/1:50,49:31:99:0.495:2	./.	./.	./.	./.	./.	./.
chr20	51870336	rs739869	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:1,77:32:78:0.987:2	0/1:1,62:31:63:0.984:2	./.	./.	./.	./.	0/1:4,139:32:143:0.972:2	./.	./.	./.	./.
chr20	51870795	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:32:124:0.032:2	./.	./.	./.	./.	./.
chr20	51870849	rs739870	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,97:29:97:1.00:2	0/1:0,69:29:69:1.00:2	0/1:6,11:30:17:0.647:2	0/1:74,68:29:142:0.479:2	0/1:0,67:28:67:1.00:2	./.	0/1:1,58:29:60:0.983:2	0/1:71,62:30:133:0.466:2	0/1:0,118:30:118:1.00:2	0/1:48,53:29:101:0.525:2	0/1:82,64:28:146:0.438:2
chr20	51871461	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,9:32:39:0.231:2	./.	./.	./.	./.
chr20	51872038	rs6097319	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,12:31:22:0.545:2	0/1:8,11:30:19:0.579:2	./.
chr20	52192408	rs34495111	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,58:31:92:0.630:2	./.	./.	./.	./.
chr20	52192595	rs61748378	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,45:33:90:0.500:2	./.	./.
chr20	52192637	rs34323943	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,49:33:95:0.516:2	./.	./.
chr20	52192963	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,4:27:56:0.071:2	./.	./.	./.	./.	./.	./.	./.
chr20	52193088	rs6063966	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,47:33:85:0.553:2	./.	./.
chr20	52193368	rs3748503	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,54:32:144:0.375:2	./.	./.	./.	./.
chr20	52193660	rs35720349	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,25:32:69:0.362:2	./.	./.	./.	./.
chr20	52193698	rs7270855	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,13:31:53:0.245:2	./.	./.	./.	./.
chr20	52198340	rs16998248	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,11:32:19:0.579:2	./.	./.	./.	0/1:85,70:32:155:0.452:2	./.	./.	./.	./.
chr20	52198967	rs1326862	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,12:30:25:0.480:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	52198979	rs35267451	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,73:32:160:0.456:2	0/1:77,27:32:104:0.260:2	./.	./.	./.	0/1:78,68:31:146:0.466:2	./.	./.	./.	./.	./.
chr20	52561469	rs1055246	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,68:33:144:0.472:2	./.	./.
chr20	52573971	rs35575210	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:58,76:29:134:0.567:2	0/1:35,48:29:83:0.578:2	./.	./.	0/1:74,65:29:139:0.468:2	./.	./.	0/1:94,84:28:178:0.472:2	./.	./.	./.
chr20	52645166	rs158551	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,64:31:131:0.492:2	./.	./.	./.
chr20	52674615	rs465184	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,28:31:77:0.364:2	0/1:37,28:31:65:0.431:2	0/1:49,14:31:63:0.222:2	0/1:49,34:32:83:0.410:2	0/1:2,101:31:103:0.981:2	0/1:31,45:33:76:0.592:2	./.	0/1:0,63:30:63:1.00:2
chr20	52675188	rs394732	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,22:31:46:0.478:2	0/1:16,13:32:29:0.448:2	0/1:20,24:32:44:0.545:2	0/1:24,13:31:37:0.351:2	0/1:2,32:31:34:0.941:2	0/1:21,30:32:51:0.588:2	./.	0/1:37,30:31:67:0.448:2
chr20	52675259	rs2020975	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,23:32:49:0.469:2	./.	./.	./.	0/1:23,6:32:29:0.207:2	./.	./.	./.
chr20	52774080	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,4:32:104:0.038:2	./.	./.	./.	./.	./.	./.	./.
chr20	52775528	rs2296239	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,26:32:60:0.433:2	0/1:34,28:31:62:0.452:2	./.	./.	./.	./.	./.	0/1:0,78:33:78:1.00:2
chr20	52779325	rs147022974	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,4:32:83:0.048:2	./.	./.	./.	./.	./.	./.	./.
chr20	52781091	rs6068816	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,50:32:136:0.368:2	./.	0/1:83,66:32:149:0.443:2
chr20	52786219	rs2296241	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,32:33:32:1.00:2	0/1:16,17:32:33:0.515:2	0/1:36,25:33:62:0.410:2	0/1:1,55:32:56:0.982:2	0/1:38,21:33:59:0.356:2	0/1:0,50:33:50:1.00:2	0/1:33,32:33:65:0.492:2
chr20	52830973	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:31:108:0.037:2	./.	./.	./.	./.
chr20	53205341	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:31:104:0.038:2	./.	./.	./.	./.	./.
chr20	54824071	rs145062060	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,51:33:104:0.490:2	./.	./.
chr20	54935242	rs17362677	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:17,11:30:28:0.393:2	0/1:7,10:31:17:0.588:2	0/1:5,4:31:9:0.444:2	./.	0/1:23,36:31:59:0.610:2	./.	./.	0/1:33,21:30:54:0.389:2	0/1:14,13:31:27:0.481:2	./.	./.
chr20	54941140	rs6099115	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:42,15:30:57:0.263:2	0/1:21,17:32:38:0.447:2	./.	./.	0/1:29,16:30:45:0.356:2	./.	./.	0/1:30,19:31:49:0.388:2	0/1:34,19:33:53:0.358:2	./.	./.
chr20	54948528	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:32:140:0.029:2	./.	./.	./.	./.	./.
chr20	54958076	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:31:76:0.053:2	./.	./.	./.
chr20	54958091	rs148425454	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:33:78:0.051:2	./.	./.	./.
chr20	54961422	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:33:191:0.021:2	./.	./.	./.
chr20	54961463	rs1047972	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,114:27:114:1.00:2	0/1:0,64:28:64:1.00:2	0/1:12,15:29:27:0.556:2	0/1:0,109:28:109:1.00:2	0/1:0,95:28:95:1.00:2	0/1:72,51:28:123:0.415:2	0/1:0,112:28:112:1.00:2	0/1:0,141:28:141:1.00:2	0/1:87,57:29:144:0.396:2	0/1:1,106:28:107:0.991:2	0/1:0,133:27:133:1.00:2
chr20	54961541	rs2273535	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:37,33:31:70:0.471:2	0/1:16,19:30:35:0.543:2	0/1:7,9:31:16:0.563:2	./.	0/1:50,27:30:77:0.351:2	./.	0/1:37,30:31:67:0.448:2	0/1:47,43:30:90:0.478:2	./.	./.	./.
chr20	55012318	rs911159	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,39:30:76:0.513:2	./.	./.	./.	./.	0/1:46,36:31:82:0.439:2	./.	./.
chr20	55028054	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,28:29:57:0.491:2
chr20	55028167	rs2870738	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,15:33:15:1.00:2	0/1:0,6:33:6:1.00:2	./.	./.	./.	0/1:0,16:32:16:1.00:2	0/1:6,4:33:10:0.400:2	0/1:3,3:32:6:0.500:2	./.	0/1:1,6:33:7:0.857:2	./.
chr20	55033476	rs3746623	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,68:31:68:1.00:2	0/1:0,36:32:36:1.00:2	0/1:1,3:31:4:0.750:2	./.	./.	0/1:0,78:32:78:1.00:2	0/1:47,34:32:82:0.420:2	0/1:53,40:32:93:0.430:2	./.	0/1:30,31:32:61:0.508:2	./.
chr20	55033635	rs3746624	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:1,55:31:56:0.982:2	0/1:0,20:31:20:1.00:2	0/1:1,3:30:4:0.750:2	./.	./.	0/1:0,77:31:77:1.00:2	0/1:54,42:31:96:0.438:2	0/1:69,52:31:121:0.430:2	./.	0/1:25,22:32:47:0.468:2	./.
chr20	55033647	rs3746625	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:1,50:30:51:0.980:2	0/1:0,18:29:18:1.00:2	0/1:1,5:32:6:0.833:2	./.	./.	0/1:0,69:30:69:1.00:2	0/1:47,39:29:86:0.453:2	0/1:57,45:29:102:0.441:2	./.	0/1:23,21:29:44:0.477:2	./.
chr20	55033713	rs3746626	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:1,46:31:47:0.979:2	0/1:0,21:30:21:1.00:2	0/1:0,4:31:4:1.00:2	./.	./.	0/1:0,73:31:73:1.00:2	0/1:45,24:30:69:0.348:2	0/1:37,52:31:89:0.584:2	./.	0/1:29,21:32:50:0.420:2	./.
chr20	55070268	rs34552628	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,20:32:20:1.00:2	./.	0/1:12,7:33:19:0.368:2	0/1:15,7:28:22:0.318:2	0/1:14,15:33:29:0.517:2	0/1:15,11:34:26:0.423:2	0/1:16,14:32:30:0.467:2	0/1:0,29:32:29:1.00:2
chr20	55072472	rs6024911	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:32:38:1.00:2	0/1:0,24:32:25:1.00:2	0/1:0,4:31:4:1.00:2	0/1:1,34:32:35:0.971:2	0/1:9,16:31:25:0.640:2	0/1:1,42:32:43:0.977:2	0/1:0,22:32:22:1.00:2	0/1:0,29:32:29:1.00:2	0/1:35,12:34:47:0.255:2	0/1:0,36:32:36:1.00:2	0/1:1,66:33:67:0.985:2
chr20	55088404	rs1059768	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:30:48:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,111:30:111:1.00:2	0/1:64,61:29:125:0.488:2	0/1:0,116:29:116:1.00:2	0/1:2,153:30:155:0.987:2	0/1:0,134:29:134:1.00:2	0/1:44,44:31:88:0.500:2	0/1:0,96:29:96:1.00:2	0/1:0,99:30:99:1.00:2
chr20	55099885	rs199707543	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,24:32:200:0.120:2	./.	./.	./.
chr20	55100005	rs2426632	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,34:32:120:0.283:2	0/1:125,49:31:174:0.282:2	./.	./.	./.	./.	./.
chr20	55100084	rs17407677	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,7:32:88:0.080:2	./.	0/1:119,7:28:127:0.056:2	./.	./.	./.	./.
chr20	55101056	rs1054362	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:35:89:0.045:2	./.	./.	./.	./.	./.
chr20	55101085	rs111909024	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,39:30:78:0.500:2	./.	./.	./.
chr20	55108418	rs41311045	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,84:32:180:0.467:2	./.	./.	./.
chr20	55108538	rs141117316	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:127,28:30:155:0.181:2	./.	./.	./.	./.	./.	./.
chr20	55108617	rs3209183	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,10:31:20:0.500:2	0/1:3,123:31:126:0.976:2	0/1:4,140:31:146:0.972:2	0/1:94,73:31:167:0.437:2	0/1:100,68:31:168:0.405:2	0/1:4,149:31:153:0.974:2	0/1:89,65:32:154:0.422:2	0/1:78,68:31:146:0.466:2	0/1:3,149:32:152:0.980:2
chr20	55111371	rs2296130	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,8:28:13:0.615:2	0/1:0,80:32:80:1.00:2	0/1:0,44:30:44:1.00:2	0/1:44,29:31:73:0.397:2	0/1:24,20:31:44:0.455:2	0/1:46,46:31:92:0.500:2	0/1:53,50:32:103:0.485:2	./.	0/1:0,79:32:79:1.00:2
chr20	55206401	rs140675668	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:28:14:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	55206405	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.	./.	./.	./.
chr20	55209257	rs35023929	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,15:29:27:0.556:2	0/1:20,33:30:53:0.623:2	0/1:20,15:29:35:0.429:2	./.	./.	./.	./.
chr20	55748206	rs2148328	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,14:30:34:0.412:2	0/1:16,9:32:25:0.360:2	0/1:0,6:32:6:1.00:2	0/1:26,23:32:49:0.469:2	0/1:1,62:31:63:0.984:2	0/1:0,49:31:49:1.00:2	0/1:0,36:31:36:1.00:2	./.	0/1:29,23:33:52:0.442:2	0/1:0,35:31:35:1.00:2	./.
chr20	55750060	rs61733438	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,15:33:33:0.455:2	./.	./.
chr20	55758929	rs61733436	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,18:29:49:0.367:2	./.	./.	./.	./.	./.	./.	./.
chr20	55800937	rs6070031	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:78,51:31:129:0.395:2	0/1:41,36:32:77:0.468:2	0/1:9,8:30:17:0.471:2	./.	0/1:101,97:32:198:0.490:2	0/1:97,97:30:194:0.500:2	0/1:110,86:32:196:0.439:2	./.	./.	0/1:0,137:32:137:1.00:2	0/1:83,72:32:155:0.465:2
chr20	55800969	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:163,4:32:167:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr20	55803299	rs41274738	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,77:32:77:1.00:2	./.	./.	0/1:36,32:32:68:0.471:2	./.	./.	./.	./.
chr20	55910542	rs3764674	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,11:31:27:0.407:2	0/1:7,3:27:10:0.300:2	./.	./.	./.	0/1:11,10:31:21:0.476:2	./.	./.	./.	./.	./.
chr20	55931594	rs1138386	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,79:32:168:0.470:2	./.	./.
chr20	56063955	rs45451298	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,17:33:34:0.500:2	./.	0/1:10,9:32:19:0.474:2	./.	./.	./.
chr20	56078607	rs114503439	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,5:33:151:0.033:2	./.	./.	./.
chr20	56083763	rs6070122	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,57:33:163:0.350:2	./.	./.	./.
chr20	56087800	rs41305825	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,63:34:111:0.568:2	./.	./.
chr20	56090807	rs6025601	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,40:32:69:0.580:2	0/1:43,36:32:79:0.456:2	0/1:27,52:33:79:0.658:2	./.	./.
chr20	56093888	rs146122711	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,44:32:110:0.400:2	0/1:55,28:31:83:0.337:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	56098733	rs6025606	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:33:47:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,11:29:11:1.00:2	0/1:41,31:32:72:0.431:2	0/1:55,38:33:94:0.409:2	0/1:36,37:32:73:0.507:2	0/1:0,78:32:78:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,61:33:61:1.00:2	0/1:2,45:32:47:0.957:2	0/1:18,32:33:51:0.640:2
chr20	56099114	rs6070128	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,106:33:107:0.991:2	0/1:0,44:33:44:1.00:2	./.	0/1:54,44:32:98:0.449:2	0/1:47,64:33:111:0.577:2	0/1:59,50:33:109:0.459:2	0/1:39,41:32:80:0.513:2	0/1:67,46:32:113:0.407:2	0/1:52,52:33:104:0.500:2	0/1:1,69:33:70:0.986:2	0/1:45,52:32:97:0.536:2
chr20	56136474	rs147120329	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,7:31:23:0.304:2	./.	./.	./.
chr20	56136536	rs1042521	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,17:32:18:0.944:2	0/1:0,10:33:10:1.00:2	./.	./.	0/1:32,10:33:42:0.238:2	0/1:14,15:32:29:0.517:2	0/1:23,31:33:54:0.574:2	0/1:0,36:33:36:1.00:2	0/1:25,10:33:36:0.286:2	0/1:6,12:33:18:0.667:2	0/1:15,14:33:29:0.483:2
chr20	56137184	rs6070157	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,22:31:63:0.349:2	0/1:39,41:31:80:0.513:2	./.	./.	./.	./.	./.	0/1:43,28:31:71:0.394:2
chr20	56137798	rs1062600	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,60:31:61:1.00:2	0/1:1,39:31:40:0.975:2	0/1:2,8:31:10:0.800:2	./.	0/1:69,42:31:111:0.378:2	0/1:58,42:31:100:0.420:2	0/1:52,43:31:95:0.453:2	0/1:59,47:31:106:0.443:2	0/1:39,37:31:76:0.487:2	0/1:38,28:31:66:0.424:2	0/1:29,29:31:58:0.500:2
chr20	56137807	rs1042523	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,58:29:58:1.00:2	0/1:1,44:28:45:0.978:2	0/1:2,9:30:11:0.818:2	./.	0/1:77,41:28:118:0.347:2	0/1:54,42:29:96:0.438:2	0/1:51,43:29:94:0.457:2	0/1:2,99:28:101:0.980:2	0/1:47,42:28:89:0.472:2	0/1:38,28:29:66:0.424:2	0/1:38,28:27:66:0.424:2
chr20	56137834	rs1062601	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,66:29:66:1.00:2	0/1:0,45:28:45:1.00:2	0/1:0,11:29:11:1.00:2	./.	0/1:81,51:29:132:0.386:2	0/1:61,58:29:119:0.487:2	0/1:56,41:28:97:0.423:2	0/1:3,103:29:106:0.972:2	0/1:57,42:29:99:0.424:2	0/1:33,41:29:74:0.554:2	0/1:38,37:26:75:0.493:2
chr20	56137895	rs707555	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,108:33:108:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,146:33:146:1.00:2	0/1:0,150:32:150:1.00:2	0/1:82,68:32:150:0.453:2	0/1:0,151:32:151:1.00:2	0/1:0,149:32:149:1.00:2	0/1:0,132:33:132:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,130:32:130:1.00:2
chr20	56138178	rs28359544	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,33:31:79:0.418:2	./.	./.	./.
chr20	56138621	rs8192708	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,17:32:24:0.708:2	./.	./.	./.	./.	./.
chr20	56138648	rs11552145	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,11:28:24:0.458:2	0/1:13,6:26:19:0.316:2	./.	./.	./.	./.	./.	0/1:23,16:27:39:0.410:2
chr20	56139355	rs185439146	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,96:32:174:0.552:2	./.	./.	./.
chr20	56139365	rs1804160	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,95:32:182:0.522:2	./.	./.	./.
chr20	56139403	rs2070756	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,125:28:125:1.00:2	0/1:0,68:29:68:1.00:2	0/1:10,7:28:17:0.412:2	0/1:0,181:30:181:1.00:2	0/1:0,186:29:186:1.00:2	./.	0/1:0,190:30:190:1.00:2	0/1:0,177:29:178:1.00:2	0/1:0,169:30:169:1.00:2	0/1:0,165:30:165:1.00:2	0/1:0,149:29:149:1.00:2
chr20	56182183	rs4811888	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:30,39:29:69:0.565:2	0/1:16,27:28:43:0.628:2	./.	0/1:65,31:27:96:0.323:2	./.	./.	./.	./.	./.	./.	./.
chr20	56182296	rs6123711	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,19:33:39:0.487:2	0/1:12,19:33:31:0.613:2	0/1:5,9:33:14:0.643:2	0/1:28,30:33:58:0.517:2	./.	0/1:0,70:33:70:1.00:2	0/1:2,70:32:72:0.972:2	./.	./.	0/1:17,22:32:39:0.564:2	./.
chr20	56185269	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:165,4:33:169:0.024:2	./.	./.	./.	./.	./.	./.
chr20	56186884	rs2865394	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:30:63:1.00:2	0/1:0,33:28:33:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,72:30:72:1.00:2	0/1:0,84:30:84:1.00:2	0/1:0,104:29:104:1.00:2	0/1:0,96:30:96:1.00:2	0/1:0,99:29:99:1.00:2	0/1:1,84:30:85:0.988:2	0/1:0,70:29:70:1.00:2	0/1:0,90:29:90:1.00:2
chr20	56188219	rs41304401	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,40:32:96:0.417:2
chr20	56188222	rs140878252	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,4:30:108:0.037:2	./.	./.	./.	./.	./.	./.	./.
chr20	56189985	rs16981187	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,100:32:193:0.518:2	./.	./.	./.	./.	./.	./.
chr20	56190634	rs2073145	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:29:9:1.00:2	0/1:50,27:31:77:0.351:2	0/1:0,95:31:95:1.00:2	0/1:37,31:31:70:0.456:2	0/1:0,73:31:73:1.00:2	0/1:5,110:32:115:0.957:2	0/1:48,35:33:83:0.422:2	./.	0/1:0,104:31:104:1.00:2
chr20	56191387	rs34917164	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,33:31:122:0.270:2	./.	./.	./.	./.	./.	./.	./.
chr20	56227514	rs6025698	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,21:30:46:0.457:2	./.	./.	0/1:12,13:29:25:0.520:2	0/1:53,11:29:64:0.172:2	./.	./.	./.
chr20	56227532	rs6025699	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,19:29:45:0.422:2	0/1:4,13:28:17:0.765:2	0/1:0,6:31:6:1.00:2	0/1:0,44:29:44:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,44:27:44:1.00:2	0/1:3,22:29:25:0.880:2	0/1:56,10:30:67:0.152:2	0/1:0,31:29:31:1.00:2	0/1:0,24:29:24:1.00:2	0/1:13,14:29:28:0.519:2
chr20	56285540	rs2273534	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,22:29:41:0.537:2	./.	./.	./.	./.	./.	./.	./.
chr20	56735759	rs17440813	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,27:29:59:0.458:2	./.	./.	0/1:29,15:28:44:0.341:2	./.	./.	0/1:18,15:28:33:0.455:2	./.
chr20	56793706	rs584855	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:32:97:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,122:32:122:1.00:2	0/1:0,113:32:113:1.00:2	0/1:0,143:32:143:1.00:2	0/1:6,149:32:155:0.961:2	0/1:2,119:33:121:0.983:2	0/1:0,108:33:108:1.00:2	0/1:1,104:31:105:0.990:2
chr20	56793764	rs1192511	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:31:51:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,77:30:77:1.00:2	0/1:0,78:31:78:1.00:2	0/1:4,74:31:78:0.949:2	0/1:1,70:32:71:0.986:2	0/1:0,67:31:67:1.00:2	0/1:0,63:31:63:1.00:2
chr20	56803353	rs1192514	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:31:5:0.600:2	0/1:33,24:30:57:0.421:2	0/1:62,38:31:100:0.380:2	0/1:34,31:31:65:0.477:2	./.	0/1:58,44:31:103:0.431:2	0/1:33,40:31:73:0.548:2	0/1:32,25:31:57:0.439:2	./.
chr20	56807969	rs3818744	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:29:64:1.00:2	0/1:0,29:29:29:1.00:2	0/1:2,5:31:7:0.714:2	0/1:41,21:29:62:0.339:2	0/1:19,13:29:32:0.406:2	0/1:27,25:29:52:0.481:2	0/1:3,22:28:25:0.880:2	0/1:32,25:29:57:0.439:2	0/1:48,35:30:83:0.422:2	0/1:43,19:29:63:0.306:2	0/1:0,85:29:85:1.00:2
chr20	56814892	rs614507	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,5:30:8:0.625:2	0/1:58,57:31:115:0.496:2	0/1:38,43:31:81:0.531:2	0/1:44,28:31:72:0.389:2	./.	0/1:80,48:30:128:0.375:2	0/1:45,28:32:73:0.384:2	0/1:33,37:31:71:0.529:2	./.
chr20	56815544	rs3833304	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,6:17:8:0.750:2	./.	./.	./.	./.
chr20	56815552	rs113239836	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,5:16:10:0.500:2	./.	./.	./.	./.
chr20	56821127	rs3746405	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:30:88:1.00:2	0/1:0,40:30:40:1.00:2	0/1:3,3:30:6:0.500:2	0/1:53,28:30:81:0.346:2	0/1:42,33:30:75:0.440:2	0/1:50,41:30:91:0.451:2	0/1:2,90:30:92:0.978:2	0/1:64,52:29:116:0.448:2	0/1:47,43:31:90:0.478:2	0/1:35,25:30:60:0.417:2	./.
chr20	56822536	rs4811972	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:32:28:1.00:2	0/1:0,14:32:14:1.00:2	0/1:5,3:32:8:0.375:2	0/1:23,18:31:42:0.439:2	0/1:25,12:30:37:0.324:2	0/1:28,17:31:45:0.378:2	0/1:1,34:31:35:0.971:2	0/1:15,33:31:48:0.688:2	0/1:20,22:32:42:0.524:2	0/1:11,27:32:38:0.711:2	0/1:0,31:31:31:1.00:2
chr20	56886132	rs151113121	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,41:32:105:0.390:2	./.	./.	./.	./.	./.	./.
chr20	57014064	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,4:32:21:0.190:2	./.	./.
chr20	57036068	rs73298776	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,43:32:94:0.457:2	./.	./.	./.	./.	./.	./.
chr20	57036140	rs41308717	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,22:29:53:0.415:2	./.	./.	./.	./.	./.	./.
chr20	57042665	rs7265854	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:28:15:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	57045667	rs1980576	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,10:30:33:0.303:2	0/1:23,34:30:57:0.596:2	./.	./.	./.	0/1:19,15:30:34:0.441:2	./.	./.
chr20	57045765	rs3946003	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:31:11:0.273:2	0/1:8,6:32:14:0.429:2	./.	./.	./.	0/1:3,4:31:7:0.571:2	./.	./.
chr20	57244396	rs41276950	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,8:31:16:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	57244488	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:35:35:0.114:2	./.	./.
chr20	57244493	rs2296524	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,18:30:33:0.545:2	./.	0/1:25,23:32:48:0.479:2	./.	./.	0/1:0,43:31:43:1.00:2	0/1:0,30:31:30:1.00:2
chr20	57266781	rs6128402	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,4:28:8:0.500:2	./.	./.	./.	./.	0/1:5,6:31:11:0.545:2	0/1:8,7:31:15:0.467:2
chr20	57268867	rs3746396	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,46:32:97:0.474:2	0/1:34,50:30:84:0.595:2	./.	./.	./.	./.	0/1:53,57:33:110:0.518:2	./.
chr20	57269495	rs7262862	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,13:32:25:0.520:2	./.	./.	./.	0/1:14,12:32:26:0.462:2
chr20	57282190	rs41310841	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,27:31:71:0.380:2	./.	./.	./.	./.	./.	./.
chr20	57289017	rs35104993	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,24:31:46:0.522:2	0/1:10,25:31:35:0.714:2	./.	./.	./.	./.	./.	./.	0/1:25,25:31:51:0.500:2	./.	./.
chr20	57290347	rs6026468	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,44:30:44:1.00:2	0/1:0,21:29:21:1.00:2	./.	0/1:0,57:30:57:1.00:2	0/1:26,34:29:60:0.567:2	0/1:19,32:31:51:0.627:2	0/1:30,25:29:55:0.455:2	./.	0/1:31,18:31:49:0.367:2	0/1:6,22:29:28:0.786:2	0/1:21,18:30:39:0.462:2
chr20	57392686	rs117258475	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,11:31:22:0.500:2	./.	./.	./.	./.	./.
chr20	57428541	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,16:31:29:0.552:2	./.
chr20	57430301	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:31:104:0.038:2	./.	./.
chr20	57466824	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:32:51:0.078:2	./.	./.
chr20	57478807	rs7121	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:102,83:31:186:0.449:2	0/1:47,66:31:113:0.584:2	0/1:23,14:30:37:0.378:2	0/1:0,186:31:186:1.00:2	0/1:0,186:31:186:1.00:2	0/1:0,190:30:190:1.00:2	0/1:108,87:31:195:0.446:2	0/1:3,182:31:185:0.984:2	0/1:121,69:32:190:0.363:2	0/1:0,191:31:191:1.00:2	0/1:108,82:31:190:0.432:2
chr20	57564070	rs2273360	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,19:32:52:0.365:2	./.	./.	./.	0/1:35,15:32:50:0.300:2	0/1:19,29:32:48:0.604:2	./.	./.
chr20	57564695	rs17851253	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,14:30:38:0.368:2	./.	./.	./.	./.	./.
chr20	57571763	rs9760	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,78:29:78:1.00:2	0/1:2,48:29:50:0.960:2	0/1:0,12:29:12:1.00:2	0/1:53,54:30:107:0.505:2	0/1:0,82:29:82:1.00:2	0/1:63,62:29:125:0.496:2	0/1:0,91:29:91:1.00:2	0/1:52,68:29:120:0.567:2	./.	0/1:50,47:30:97:0.485:2	0/1:48,43:29:91:0.473:2
chr20	57572675	rs163785	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:29:36:1.00:2	0/1:0,30:28:30:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,62:28:62:1.00:2	0/1:0,49:28:49:1.00:2	0/1:0,40:28:40:1.00:2	0/1:0,77:29:77:1.00:2	0/1:0,58:28:58:1.00:2	0/1:0,62:29:62:1.00:2	0/1:0,58:29:58:1.00:2	0/1:0,49:29:49:1.00:2
chr20	57597910	rs374942824	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,50:31:120:0.417:2	./.	./.	./.	./.
chr20	57597970	rs463312	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,23:32:67:0.343:2	./.	./.
chr20	57597971	rs415064	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,24:32:66:0.364:2	./.	./.
chr20	57599016	rs163777	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:29:76:1.00:2	0/1:0,56:28:56:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,83:29:83:1.00:2	0/1:0,89:29:89:1.00:2	0/1:0,99:29:99:1.00:2	0/1:0,81:29:81:1.00:2	0/1:0,91:29:91:1.00:2	0/1:1,55:29:56:0.982:2	0/1:0,70:29:70:1.00:2	0/1:0,64:29:64:1.00:2
chr20	57599303	rs35565630	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,14:30:32:0.438:2
chr20	57599402	rs6070697	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,32:31:56:0.571:2	./.	./.	0/1:19,18:32:37:0.486:2
chr20	57613627	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:30:111:0.036:2	./.	./.	./.
chr20	57613685	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:30:48:0.083:2	./.	./.	./.
chr20	57767939	rs184790538	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,11:14:64:0.172:2	./.	0/1:53,14:16:67:0.209:2	0/1:68,16:11:84:0.190:2	0/1:50,16:10:67:0.242:2	./.	0/1:46,12:15:58:0.207:2	0/1:41,12:15:53:0.226:2
chr20	57768222	rs61743775	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,39:31:69:0.565:2	./.	./.	./.	./.	./.
chr20	57768281	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:31:69:0.058:2	./.	./.	./.	./.
chr20	57768399	rs442091	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:33:5:1.00:2	./.	0/1:17,16:32:33:0.485:2	./.	./.	./.	./.	./.	0/1:24,13:32:37:0.351:2
chr20	57768657	rs41276962	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,16:31:40:0.400:2
chr20	57768743	rs56057707	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	0/1:23,8:30:31:0.258:2	./.	./.	./.	./.	./.	0/1:26,6:32:32:0.188:2
chr20	57769140	rs55786258	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,7:32:21:0.333:2	./.	./.	./.	./.	./.	0/1:7,6:34:13:0.462:2
chr20	57828999	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,6:32:92:0.065:2
chr20	57829301	rs259956	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:45,42:32:87:0.483:2	0/1:15,19:32:34:0.559:2	./.	0/1:34,37:32:71:0.521:2	0/1:0,68:31:68:1.00:2	0/1:39,53:32:92:0.576:2	0/1:33,34:31:67:0.507:2	0/1:48,33:31:81:0.407:2	0/1:32,49:33:81:0.605:2	0/1:23,31:32:54:0.574:2	0/1:44,42:32:86:0.488:2
chr20	58440840	rs6070978	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,15:32:28:0.536:2	./.	./.	./.	0/1:8,13:32:21:0.619:2	./.	./.	./.
chr20	58442826	rs6070981	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,35:30:83:0.422:2	./.	./.	./.	0/1:59,35:31:94:0.372:2	./.	./.	./.
chr20	58452582	rs61733222	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,18:29:40:0.450:2	./.	./.	./.	0/1:15,16:29:31:0.516:2	./.	./.	./.
chr20	58461795	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:31:43:0.093:2	./.	./.	./.
chr20	58467157	rs6071006	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,47:31:109:0.431:2	./.	./.	./.	0/1:71,34:32:105:0.324:2	./.	./.	./.
chr20	58467276	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:32:169:0.024:2	./.	./.	./.	./.	./.
chr20	58467655	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:32:170:0.024:2
chr20	58475248	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,6:32:113:0.054:2
chr20	58476774	rs6027186	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,26:31:59:0.441:2	./.	./.	./.	0/1:35,18:32:53:0.340:2	./.	./.	./.
chr20	58476811	rs45441401	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:32:9:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	58486827	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,8:32:30:0.267:2	./.	./.	./.	./.
chr20	58490523	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,61:30:126:0.484:2	./.	./.	./.	./.	./.
chr20	58520296	rs6071037	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,11:31:25:0.440:2	./.	./.	./.	0/1:13,3:33:16:0.188:2	./.	./.	./.
chr20	58521369	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.	./.
chr20	58523104	rs194973	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,6:31:6:1.00:2	./.	0/1:0,2:32:2:1.00:2	./.	0/1:0,9:31:9:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,6:30:6:1.00:2	./.	0/1:0,6:33:6:1.00:2	0/1:6,6:31:12:0.500:2	0/1:0,11:29:11:1.00:2
chr20	58523551	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:32:197:0.020:2
chr20	58558082	rs76721730	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,25:32:63:0.397:2	./.	./.	./.	./.	./.	./.	./.
chr20	58562571	rs11086690	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,41:32:86:0.477:2	./.	./.	./.	./.	./.	./.	./.
chr20	58564146	rs28409250	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,14:33:33:0.424:2	./.	./.	./.	./.	./.	./.	./.
chr20	58567492	rs34866303	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,21:34:43:0.488:2	./.
chr20	58576432	rs41310817	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,33:29:61:0.550:2	./.	./.	./.	./.	./.	./.	./.
chr20	58883534	rs6513496	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,71:32:71:1.00:2	./.	0/1:0,81:31:81:1.00:2	./.	./.	./.	./.	./.
chr20	58883605	rs6513497	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,60:30:62:0.968:2	./.	./.	./.	./.	./.	./.	./.
chr20	60293919	rs2892179	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:32:76:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,68:31:68:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,86:31:86:1.00:2	0/1:59,40:32:99:0.404:2	0/1:0,73:32:73:1.00:2	0/1:0,80:32:80:1.00:2
chr20	60294005	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:114,4:31:118:0.034:2	./.	./.	./.	./.	./.	./.
chr20	60294279	rs4925275	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:32,23:27:55:0.418:2	0/1:6,16:27:22:0.727:2	0/1:0,7:27:7:1.00:2	./.	./.	0/1:32,17:26:50:0.347:2	0/1:19,20:27:39:0.513:2	0/1:33,38:27:71:0.535:2	./.	0/1:1,47:27:48:0.979:2	./.
chr20	60294296	rs4925196	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,60:31:61:0.984:2	./.
chr20	60294388	rs6089489	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,47:32:103:0.456:2	0/1:4,83:32:87:0.954:2	./.	0/1:50,39:31:90:0.438:2	./.	./.	./.	0/1:80,69:32:149:0.463:2
chr20	60419750	rs34912551	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,32:30:71:0.451:2	./.	./.	./.	./.
chr20	60485627	rs2427240	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:30:42:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,8:28:8:1.00:2	0/1:0,73:31:73:1.00:2	0/1:2,101:31:103:0.981:2	0/1:0,64:31:64:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,79:31:79:1.00:2	0/1:34,31:31:65:0.477:2	0/1:0,63:30:64:1.00:2
chr20	60503350	rs6142884	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:33:7:0.714:2	./.	./.	0/1:20,12:33:32:0.375:2	0/1:7,4:33:11:0.364:2	./.	0/1:13,3:36:16:0.188:2	./.	0/1:8,6:33:14:0.429:2
chr20	60504809	rs149231472	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:33:185:0.022:2	./.	./.	./.	./.
chr20	60509209	rs3753045	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,4:29:9:0.444:2	./.	./.	0/1:9,12:29:21:0.571:2	./.	0/1:0,6:26:6:1.00:2
chr20	60551260	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:33:65:0.062:2	./.
chr20	60572663	rs2296081	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,55:30:56:0.982:2	0/1:0,40:31:40:1.00:2	0/1:0,13:28:13:1.00:2	0/1:48,44:30:92:0.478:2	0/1:0,90:30:90:1.00:2	0/1:1,85:30:86:0.988:2	0/1:0,107:31:107:1.00:2	0/1:72,53:30:125:0.424:2	0/1:62,53:32:115:0.461:2	0/1:45,25:29:70:0.357:2	0/1:1,91:31:92:0.989:2
chr20	60581654	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	./.
chr20	60585201	rs147291976	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,15:32:29:0.517:2	./.
chr20	60697783	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:161,4:32:165:0.024:2	./.	./.	./.	./.	./.	./.	./.
chr20	60697803	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:150,4:33:154:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr20	60712511	rs2281740	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,89:33:90:0.989:2	0/1:0,44:33:44:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,126:33:127:1.00:2	0/1:0,121:32:121:1.00:2	0/1:0,93:32:93:1.00:2	0/1:49,40:32:90:0.449:2	0/1:57,53:32:110:0.482:2	0/1:64,55:33:119:0.462:2	0/1:62,42:33:104:0.404:2	0/1:65,59:32:124:0.476:2
chr20	60713311	rs7076	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,114:31:115:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,126:32:126:1.00:2	0/1:0,142:31:142:1.00:2	0/1:0,133:31:133:1.00:2	0/1:76,85:31:161:0.528:2	0/1:83,70:31:153:0.458:2	0/1:81,60:32:141:0.426:2	0/1:62,55:32:118:0.470:2	0/1:55,62:32:117:0.530:2
chr20	60713332	rs1135961	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,93:32:93:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,19:33:19:1.00:2	0/1:0,123:33:123:1.00:2	0/1:0,133:32:133:1.00:2	0/1:0,113:33:113:1.00:2	0/1:76,67:32:143:0.469:2	0/1:0,125:32:125:1.00:2	0/1:1,133:33:134:0.993:2	0/1:0,91:33:91:1.00:2	0/1:48,58:33:106:0.547:2
chr20	60718351	rs143498992	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,6:31:14:0.429:2	./.	./.	./.	./.	./.	./.
chr20	60718871	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,3:30:19:0.158:2
chr20	60736540	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:126,6:32:132:0.045:2	./.	./.	./.	./.	./.	./.	./.
chr20	60737908	rs61744430	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,45:31:87:0.517:2	0/1:37,22:31:59:0.373:2	./.	./.
chr20	60738566	rs73309164	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,23:31:41:0.561:2	0/1:4,21:31:25:0.840:2	./.	./.
chr20	60768497	rs2236527	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:1,146:32:147:0.993:2	0/1:0,64:32:64:1.00:2	0/1:18,9:31:27:0.333:2	./.	./.	./.	./.	0/1:111,77:31:188:0.410:2	./.	./.	./.
chr20	60768573	rs41284984	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,36:32:76:0.474:2	./.	./.	./.	./.	./.	./.
chr20	60775922	rs35693261	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,62:32:129:0.481:2	./.	./.
chr20	60791404	rs3787429	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:27,3:33:30:0.100:2	./.	0/1:32,46:31:78:0.590:2	0/1:28,43:31:71:0.606:2	./.	0/1:19,15:31:34:0.441:2	0/1:21,30:32:51:0.588:2	./.	./.	0/1:0,47:31:47:1.00:2
chr20	60791422	rs3787430	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,42:30:68:0.618:2	./.	./.	./.	./.	./.	0/1:18,24:31:42:0.571:2
chr20	60831300	rs6089706	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,47:30:47:1.00:2	0/1:0,27:32:27:1.00:2	./.	0/1:0,60:31:60:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,77:31:77:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,71:32:71:1.00:2	0/1:24,30:32:54:0.556:2	0/1:0,61:32:61:1.00:2
chr20	60881330	rs2427273	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,44:31:45:1.00:2	0/1:0,29:31:29:1.00:2	./.	0/1:0,86:30:86:1.00:2	0/1:0,80:30:80:1.00:2	0/1:0,70:30:71:1.00:2	0/1:0,99:31:99:1.00:2	0/1:1,91:30:92:0.989:2	0/1:0,96:31:96:1.00:2	0/1:34,41:30:75:0.547:2	0/1:0,79:31:79:1.00:2
chr20	60881780	rs2427275	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:29:75:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,106:30:106:1.00:2	0/1:0,124:28:124:1.00:2	0/1:0,113:29:113:1.00:2	0/1:0,109:29:110:1.00:2	0/1:0,145:29:145:1.00:2	0/1:0,80:30:80:1.00:2	0/1:50,34:29:84:0.405:2	0/1:1,57:30:58:0.983:2
chr20	60883191	rs45576934	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,16:31:42:0.381:2	./.	./.	./.	./.	./.	./.
chr20	60886987	rs944896	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,20:28:63:0.317:2	0/1:27,30:29:57:0.526:2	./.	./.	./.	./.	./.
chr20	60887343	rs138705828	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,15:31:24:0.625:2	./.
chr20	60887581	rs944895	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	0/1:3,12:30:15:0.800:2	0/1:0,9:31:9:1.00:2	0/1:0,11:32:11:1.00:2	./.	./.	0/1:0,2:34:2:1.00:2	./.
chr20	60888172	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:101,4:30:105:0.038:2	./.	./.	./.	./.	./.	./.
chr20	60889385	rs117480847	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,33:29:58:0.569:2	./.	./.	./.	./.	./.	./.	./.
chr20	60892526	rs2427281	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:28:63:1.00:2	0/1:0,35:28:35:1.00:2	0/1:0,2:28:2:1.00:2	0/1:0,65:28:65:1.00:2	0/1:0,50:28:50:1.00:2	0/1:0,62:27:62:1.00:2	0/1:0,59:28:59:1.00:2	0/1:0,53:28:53:1.00:2	0/1:0,60:29:60:1.00:2	0/1:29,13:27:42:0.310:2	0/1:0,38:27:38:1.00:2
chr20	60893639	rs6089732	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,10:29:19:0.526:2	0/1:15,5:32:20:0.250:2	./.	./.	0/1:21,16:30:37:0.432:2	0/1:19,10:30:29:0.345:2	0/1:7,6:30:13:0.462:2	0/1:22,15:30:37:0.405:2	./.	./.	0/1:10,3:34:13:0.231:2
chr20	60895697	rs2297587	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:15,7:29:22:0.318:2	0/1:0,6:29:6:1.00:2	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.
chr20	60895912	rs200144783	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,57:31:156:0.365:2	0/1:73,36:31:109:0.330:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	60897104	rs141208202	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,4:35:14:0.286:2	./.	./.
chr20	60897487	rs2274934	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:16,11:30:27:0.407:2	0/1:9,5:30:14:0.357:2	./.	0/1:25,17:29:42:0.405:2	./.	0/1:0,37:30:37:1.00:2	0/1:0,29:29:29:1.00:2	./.	0/1:0,24:32:24:1.00:2	0/1:13,17:30:30:0.567:2	./.
chr20	60897488	rs2274933	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:11,16:31:27:0.593:2	0/1:6,9:30:15:0.600:2	0/1:2,6:30:8:0.750:2	0/1:17,25:30:42:0.595:2	0/1:30,17:29:47:0.362:2	./.	./.	./.	./.	./.	0/1:0,17:30:17:1.00:2
chr20	60897721	rs3737137	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:28:4:1.00:2	./.	./.
chr20	60897772	rs6143021	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:30:7:0.429:2	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2
chr20	60898654	rs11696243	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,19:31:33:0.576:2	./.	./.	./.
chr20	60899182	rs11698080	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,29:27:47:0.644:2	0/1:12,12:30:24:0.500:2	0/1:8,7:28:15:0.467:2	0/1:33,16:26:51:0.327:2	0/1:23,37:27:61:0.617:2	./.	./.	0/1:36,35:28:72:0.493:2	./.	./.	0/1:1,34:27:36:0.971:2
chr20	60899196	rs116895933	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:35,15:32:50:0.300:2	0/1:7,12:32:19:0.632:2	./.	./.	./.	./.	0/1:20,17:30:37:0.459:2	./.	./.	./.	./.
chr20	60899206	rs2427283	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,15:32:53:0.283:2	0/1:8,13:32:21:0.619:2	0/1:9,7:32:16:0.438:2	0/1:29,32:31:61:0.525:2	0/1:43,33:31:76:0.434:2	0/1:0,83:30:83:1.00:2	0/1:0,41:30:41:1.00:2	0/1:50,35:31:85:0.412:2	0/1:0,68:32:68:1.00:2	0/1:22,22:32:44:0.500:2	./.
chr20	60900481	rs2427284	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:31:41:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,82:31:82:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,63:32:63:1.00:2	0/1:2,82:32:84:0.976:2	0/1:0,54:33:55:1.00:2	0/1:31,21:31:52:0.404:2	0/1:0,45:32:45:1.00:2
chr20	60900579	rs2427285	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:31:41:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,96:31:96:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,96:33:96:1.00:2	0/1:37,35:31:72:0.486:2	0/1:0,68:33:68:1.00:2
chr20	60901737	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,5:28:102:0.049:2	./.	./.
chr20	60901754	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:33:123:0.033:2	./.	./.
chr20	60901762	rs11699758	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,99:31:169:0.586:2	./.	./.	./.
chr20	60901986	rs875379	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,67:30:149:0.453:2	./.	./.	./.	./.	0/1:71,78:30:149:0.523:2	./.	./.
chr20	60902389	rs944893	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,36:30:65:0.554:2	./.	./.	./.	./.	0/1:18,37:31:55:0.673:2	./.	./.
chr20	60902402	rs13039398	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,36:31:62:0.581:2	./.	./.	./.
chr20	60903419	rs7262393	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,14:29:18:0.778:2	0/1:5,7:30:12:0.583:2	./.	0/1:8,7:29:15:0.467:2	0/1:13,11:30:24:0.458:2	./.	./.	0/1:14,12:27:26:0.462:2	./.	./.	0/1:0,13:29:13:1.00:2
chr20	60904853	rs2427286	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:29:59:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,12:28:12:1.00:2	0/1:0,65:29:65:1.00:2	0/1:0,79:29:79:1.00:2	0/1:0,85:29:85:1.00:2	0/1:0,72:29:72:1.00:2	0/1:1,109:28:110:0.991:2	0/1:0,70:30:70:1.00:2	0/1:33,12:29:45:0.267:2	0/1:0,52:29:52:1.00:2
chr20	60905878	rs3810548	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,11:29:11:1.00:2	0/1:0,6:28:6:1.00:2	0/1:0,4:29:4:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,12:29:12:1.00:2	0/1:0,4:29:4:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,12:31:12:1.00:2	0/1:14,4:32:18:0.222:2	0/1:0,4:32:4:1.00:2
chr20	60907446	rs2151513	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:33:46:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,67:33:67:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,72:33:72:1.00:2	0/1:0,62:33:62:1.00:2	0/1:24,34:32:58:0.586:2	0/1:0,62:32:62:1.00:2
chr20	60907675	rs6142734	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:32:25:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,52:31:52:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,30:31:30:1.00:2	0/1:9,6:32:15:0.400:2	0/1:0,20:31:20:1.00:2
chr20	60908964	rs13044266	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:32:23:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,27:30:27:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,29:31:29:1.00:2	0/1:3,16:31:19:0.842:2	0/1:26,15:31:41:0.366:2	0/1:0,17:32:17:1.00:2
chr20	60908969	rs13042941	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:31:22:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,38:31:38:1.00:2	0/1:2,31:31:33:0.939:2	0/1:0,35:30:35:1.00:2	0/1:0,24:28:24:1.00:2	0/1:0,32:30:32:1.00:2	0/1:4,21:32:26:0.840:2	0/1:29,19:30:49:0.396:2	0/1:0,17:30:17:1.00:2
chr20	60909060	rs13038331	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,100:28:100:1.00:2	0/1:0,53:28:53:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,149:29:149:1.00:2	0/1:0,181:28:181:1.00:2	0/1:0,160:29:160:1.00:2	0/1:1,185:28:186:0.995:2	0/1:3,180:28:183:0.984:2	0/1:0,141:29:141:1.00:2	0/1:103,68:29:171:0.398:2	0/1:0,80:29:80:1.00:2
chr20	60912683	rs2427289	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:28:58:1.00:2	0/1:1,33:28:34:0.971:2	0/1:0,11:29:11:1.00:2	0/1:0,75:28:75:1.00:2	0/1:0,99:27:99:1.00:2	0/1:0,92:28:92:1.00:2	0/1:0,67:27:67:1.00:2	0/1:0,74:27:74:1.00:2	0/1:0,52:29:52:1.00:2	0/1:23,32:28:55:0.582:2	0/1:0,25:28:25:1.00:2
chr20	60913127	rs8124907	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,26:31:70:0.371:2	0/1:28,18:29:46:0.391:2	0/1:11,6:32:17:0.353:2	0/1:58,42:31:100:0.420:2	0/1:109,58:30:167:0.347:2	./.	./.	0/1:69,32:30:101:0.317:2	./.	./.	0/1:1,39:28:40:0.975:2
chr20	60920887	rs11204472	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:21,12:31:33:0.364:2	0/1:8,10:32:18:0.556:2	./.	0/1:47,27:32:74:0.365:2	0/1:50,35:32:85:0.412:2	0/1:0,54:32:54:1.00:2	0/1:0,70:31:70:1.00:2	0/1:31,36:32:67:0.537:2	0/1:0,50:32:50:1.00:2	0/1:24,12:31:36:0.333:2	./.
chr20	60920908	rs45527634	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,21:30:71:0.300:2	./.	./.	./.	./.	./.
chr20	60920911	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:31:87:0.046:2	./.	./.	./.
chr20	60921643	rs4925229	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:29:86:1.00:2	0/1:0,68:29:68:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,122:30:123:1.00:2	0/1:0,93:29:93:1.00:2	0/1:0,118:29:118:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,100:29:100:1.00:2	0/1:0,81:30:81:1.00:2	0/1:83,41:29:124:0.331:2	0/1:0,29:28:29:1.00:2
chr20	60926772	rs114928407	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,42:30:91:0.462:2	./.	./.	./.
chr20	60926828	rs62204553	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:31:11:0.636:2	./.	./.	./.	./.	0/1:26,29:31:55:0.527:2	./.	./.	./.
chr20	60927029	rs145049366	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,5:28:35:0.143:2
chr20	60927349	rs483876	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:32:22:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,26:33:26:1.00:2	0/1:9,8:32:17:0.471:2	0/1:0,26:32:26:1.00:2
chr20	60927412	rs624313	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,9:32:13:0.692:2	0/1:0,2:33:2:1.00:2	./.	0/1:15,14:30:29:0.483:2	0/1:20,15:31:35:0.429:2	0/1:0,18:31:18:1.00:2	0/1:0,13:29:13:1.00:2	0/1:19,6:31:25:0.240:2	0/1:0,23:32:23:1.00:2	0/1:5,4:33:9:0.444:2	./.
chr20	60937597	rs477859	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,30:29:64:0.469:2	0/1:14,16:29:30:0.533:2	0/1:5,3:31:8:0.375:2	0/1:53,40:30:93:0.430:2	0/1:83,54:29:137:0.394:2	0/1:1,100:29:101:0.990:2	0/1:1,107:29:108:0.991:2	0/1:2,78:29:80:0.975:2	0/1:0,64:31:64:1.00:2	0/1:41,37:30:78:0.474:2	./.
chr20	60962943	rs1043008	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,73:29:148:0.493:2	./.	./.	./.	./.	./.	./.	./.
chr20	60963055	rs911077	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,9:33:17:0.529:2	./.	./.	./.	0/1:68,58:31:126:0.460:2	./.	0/1:72,52:33:124:0.419:2	0/1:3,101:32:104:0.971:2	./.
chr20	60963359	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:30,7:19:37:0.189:2	./.	./.	./.	./.	./.	./.	0/1:54,9:16:63:0.143:2	./.	./.	./.
chr20	60963494	rs6089356	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:102,50:32:152:0.329:2	0/1:54,48:32:102:0.471:2	./.	./.	0/1:90,41:32:131:0.313:2	0/1:66,50:31:116:0.431:2	0/1:70,60:31:130:0.462:2	0/1:77,42:31:119:0.353:2	./.	./.	./.
chr20	60966318	rs6089219	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,19:31:19:1.00:2	0/1:0,11:32:11:1.00:2	./.	0/1:0,31:32:31:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,12:29:12:1.00:2
chr20	60966374	rs13042761	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,25:32:45:0.556:2	./.	./.	./.	0/1:32,20:32:52:0.385:2	./.	./.	./.
chr20	60966460	rs61742254	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,25:31:69:0.362:2	./.	./.
chr20	60968547	rs41284972	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,65:32:142:0.464:2	./.	./.	./.	./.	./.
chr20	60968596	rs1570027	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,57:30:121:0.471:2	0/1:29,33:30:62:0.532:2	0/1:10,7:30:17:0.412:2	0/1:84,72:30:156:0.462:2	0/1:101,83:30:184:0.451:2	./.	./.	./.	./.	./.	0/1:3,95:30:98:0.969:2
chr20	60970082	rs186502881	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:24,26:31:50:0.520:2	./.	./.	./.	./.	./.	./.
chr20	60971461	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,4:31:36:0.111:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	60971565	rs202169971	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,20:31:53:0.385:2	./.	./.	./.	./.	./.	./.	./.
chr20	60986019	rs2236200	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,50:30:93:0.538:2	0/1:26,19:30:45:0.422:2	0/1:8,4:26:12:0.333:2	0/1:68,49:28:117:0.419:2	0/1:46,53:30:99:0.535:2	./.	./.	./.	./.	./.	0/1:0,99:30:99:1.00:2
chr20	60987737	rs6089366	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	0/1:8,8:32:16:0.500:2	./.	./.
chr20	60989185	rs10888228	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:31:5:1.00:2	./.	./.	./.	./.	./.	0/1:6,4:30:10:0.400:2	./.	./.
chr20	60989365	rs3810553	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,3:30:4:0.750:2	0/1:0,10:30:11:1.00:2	0/1:0,4:31:4:1.00:2	0/1:2,3:30:5:0.600:2	./.	0/1:0,2:29:2:1.00:2	./.
chr20	60989567	rs201807836	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,34:30:73:0.466:2	./.	./.	./.	./.	./.	./.	./.
chr20	60989607	rs200738153	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,35:29:71:0.493:2
chr20	61039958	rs6061550	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:21,11:30:32:0.344:2	0/1:6,10:30:16:0.625:2	0/1:0,5:31:5:1.00:2	./.	0/1:9,15:30:25:0.625:2	0/1:1,27:31:28:0.964:2	./.	0/1:0,31:30:31:1.00:2	0/1:21,7:32:28:0.250:2	./.	./.
chr20	61040453	rs6061243	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,11:32:20:0.550:2	0/1:5,3:32:8:0.375:2	./.	./.	0/1:37,6:34:43:0.140:2	0/1:0,33:32:33:1.00:2	0/1:30,22:33:52:0.423:2	0/1:33,25:33:58:0.431:2	0/1:0,24:34:24:1.00:2	0/1:11,11:32:22:0.500:2	./.
chr20	61040951	rs6587239	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:32,18:33:50:0.360:2	0/1:8,7:31:15:0.467:2	./.	./.	0/1:54,37:31:91:0.407:2	0/1:0,69:31:69:1.00:2	0/1:59,33:32:92:0.359:2	0/1:50,36:32:86:0.419:2	0/1:0,60:32:60:1.00:2	0/1:34,18:31:52:0.346:2	./.
chr20	61041540	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,4:34:28:0.143:2
chr20	61048549	rs41305803	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:1,46:32:47:0.979:2	0/1:2,30:31:32:0.938:2	0/1:2,7:29:9:0.778:2	./.	./.	0/1:0,93:30:93:1.00:2	0/1:19,25:31:44:0.568:2	0/1:37,61:30:98:0.622:2	0/1:29,41:32:70:0.586:2	0/1:26,22:31:48:0.458:2	./.
chr20	61143487	rs3934574	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:10,22:31:32:0.688:2	0/1:7,9:31:16:0.563:2	0/1:4,4:30:8:0.500:2	./.	0/1:0,42:32:42:1.00:2	0/1:14,20:30:34:0.588:2	./.	0/1:1,51:31:52:0.981:2	./.	0/1:21,15:32:36:0.417:2	0/1:0,30:32:30:1.00:2
chr20	61143945	rs3934573	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,8:33:26:0.308:2	0/1:11,7:32:18:0.389:2	./.	./.	0/1:0,49:32:49:1.00:2	0/1:30,21:32:51:0.412:2	./.	0/1:0,45:31:45:1.00:2	./.	0/1:26,24:33:50:0.480:2	0/1:0,37:31:37:1.00:2
chr20	61143951	rs45612436	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:14,7:31:22:0.333:2	0/1:11,7:32:18:0.389:2	./.	./.	0/1:29,24:29:53:0.453:2	./.	./.	0/1:2,43:31:45:0.956:2	./.	./.	0/1:13,24:32:37:0.649:2
chr20	61144012	rs45553940	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:8,8:30:16:0.500:2	0/1:8,5:31:13:0.385:2	./.	./.	0/1:21,16:30:37:0.432:2	./.	./.	0/1:0,24:31:24:1.00:2	./.	./.	0/1:5,8:29:13:0.615:2
chr20	61162267	rs6062251	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:29:2:1.00:2	0/1:0,3:30:3:1.00:2	./.	0/1:0,5:22:5:1.00:2	0/1:0,2:32:2:1.00:2	./.	0/1:0,4:26:4:1.00:2	./.	./.
chr20	61167883	rs6143064	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,23:29:23:1.00:2	0/1:0,17:31:17:1.00:2	./.	./.	0/1:0,32:30:32:1.00:2	0/1:25,21:30:46:0.457:2	./.	0/1:30,27:29:57:0.474:2	./.	./.	./.
chr20	61273578	rs6089951	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr20	61288038	rs1047099	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:30:6:0.500:2	0/1:6,3:30:9:0.333:2	./.	./.	0/1:0,5:32:5:1.00:2	./.	0/1:2,3:31:5:0.600:2	./.
chr20	61288151	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:32:97:0.041:2
chr20	61288355	rs3195701	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:28:6:0.500:2	0/1:5,6:28:11:0.545:2	0/1:2,6:27:8:0.750:2	./.	./.	0/1:0,5:31:5:1.00:2	./.	0/1:5,7:28:12:0.583:2	./.
chr20	61288593	rs140267842	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,28:31:56:0.500:2	./.	./.	./.	./.	./.	./.
chr20	61296367	rs148710404	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,22:31:57:0.386:2	./.	./.	./.	./.	./.	./.
chr20	61299525	rs34985812	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:46,31:33:77:0.403:2	0/1:33,13:32:46:0.283:2	./.	./.	./.	./.	0/1:31,42:33:73:0.575:2	./.	0/1:62,66:33:128:0.516:2	0/1:41,59:33:100:0.590:2	./.
chr20	61326380	rs2427394	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,29:29:29:1.00:2	0/1:0,14:31:14:1.00:2	./.	0/1:0,37:31:37:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,28:30:28:1.00:2	0/1:28,15:30:43:0.349:2	0/1:0,34:31:34:1.00:2	0/1:0,27:30:27:1.00:2
chr20	61326559	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:121,4:30:125:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr20	61326598	rs151051247	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,33:32:61:0.541:2	./.	./.
chr20	61340694	rs61742231	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,7:30:8:0.875:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	61386231	rs6010685	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	./.
chr20	61386232	rs2273075	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:30:7:0.571:2	./.	./.
chr20	61389691	rs113016803	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,57:32:121:0.471:2	./.	./.	./.	./.	./.
chr20	61391378	rs139953956	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,61:32:110:0.555:2	./.	./.	./.	./.	./.	./.
chr20	61391613	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,6:33:46:0.130:2	./.	./.	./.	./.	./.
chr20	61440971	rs1048792	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:79,64:32:143:0.448:2	./.	./.	./.	./.	./.	./.	./.
chr20	61442909	rs144097750	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,7:32:18:0.389:2	./.	./.	./.
chr20	61443636	rs13038939	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:29:15:0.400:2	./.	0/1:67,81:30:148:0.547:2	0/1:55,74:31:129:0.574:2	0/1:3,133:31:136:0.978:2	./.	0/1:32,59:32:91:0.648:2	./.	./.
chr20	61443660	rs3204347	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,4:33:12:0.333:2	./.	0/1:43,60:29:103:0.583:2	0/1:39,54:30:93:0.581:2	0/1:4,88:30:92:0.957:2	./.	0/1:20,48:31:68:0.706:2	./.	./.
chr20	61443687	rs6122311	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,12:30:24:0.522:2	0/1:8,7:31:15:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	61443870	rs11086139	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,4:29:15:0.267:2	0/1:10,8:29:18:0.444:2	0/1:0,8:30:8:1.00:2	./.	./.	./.	./.
chr20	61444233	rs6010751	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:32:5:0.800:2	./.	./.	0/1:5,14:29:19:0.737:2	./.	./.	./.	./.	./.
chr20	61444540	rs61729550	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:25:6:0.667:2	./.
chr20	61444637	rs78981100	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr20	61444665	rs6122314	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.
chr20	61444693	rs35813009	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	0/1:0,2:31:2:1.00:2	./.	./.
chr20	61444697	rs6122315	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	0/1:0,2:32:2:1.00:2	./.	./.
chr20	61444785	rs28368556	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.
chr20	61444939	rs11543349	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,20:31:42:0.476:2	0/1:9,10:30:19:0.526:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	61445097	rs149819528	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,16:30:24:0.667:2	./.	./.	./.
chr20	61448933	rs2273078	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,11:32:20:0.550:2	./.	./.	./.	./.	./.	./.	0/1:2,6:31:8:0.750:2
chr20	61448969	rs2273079	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:31:5:0.800:2	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	61451332	rs61734651	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,9:32:33:0.273:2	./.	./.	./.	./.
chr20	61452837	rs117347229	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,20:29:42:0.476:2	0/1:11,15:31:26:0.577:2	./.	./.	./.	0/1:49,27:28:76:0.355:2	./.	./.	0/1:44,24:31:68:0.353:2	0/1:26,37:29:63:0.587:2	./.
chr20	61455823	rs150148851	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,48:32:91:0.527:2	./.	./.	./.	./.	./.	./.
chr20	61459315	rs45628843	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,27:30:50:0.540:2	0/1:10,8:28:18:0.444:2	./.	./.	./.	./.	./.	./.	0/1:33,28:31:61:0.459:2	0/1:24,18:30:42:0.429:2	./.
chr20	61460124	rs2249903	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,16:32:37:0.432:2	0/1:28,16:31:44:0.364:2	0/1:0,37:32:37:1.00:2	./.	0/1:13,8:32:21:0.381:2	./.	./.
chr20	61460338	rs6062700	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:30:5:0.600:2	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	0/1:0,4:33:4:1.00:2	./.	./.	./.	0/1:1,6:30:7:0.857:2
chr20	61461901	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,6:35:19:0.316:2	./.
chr20	61463501	rs741758	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,9:34:15:0.600:2	0/1:56,66:32:122:0.541:2	0/1:1,73:32:74:0.986:2	0/1:69,36:32:105:0.343:2	0/1:2,83:32:85:0.976:2	./.	0/1:78,48:33:126:0.381:2	./.	0/1:65,38:32:103:0.369:2
chr20	61463522	rs751557	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:31:13:0.308:2	./.	0/1:48,23:31:71:0.324:2	0/1:59,32:31:91:0.352:2	0/1:4,78:31:82:0.951:2	./.	0/1:71,40:32:111:0.360:2	./.	0/1:62,38:31:100:0.380:2
chr20	61464440	rs1018440	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,8:30:20:0.400:2	./.	0/1:58,26:30:84:0.310:2	0/1:47,31:30:79:0.397:2	0/1:0,64:30:64:1.00:2	./.	0/1:61,42:31:103:0.408:2	./.	0/1:42,46:30:88:0.523:2
chr20	61467328	rs201736906	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,23:32:54:0.426:2	0/1:22,14:32:36:0.389:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	61467898	rs910152	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,16:30:16:1.00:2	0/1:0,15:31:15:1.00:2	./.	0/1:0,32:30:32:1.00:2	0/1:0,27:31:27:1.00:2	0/1:15,16:32:31:0.516:2	0/1:0,15:30:15:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,27:32:27:1.00:2
chr20	61468571	rs2294995	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,4:30:4:1.00:2	0/1:0,5:28:5:1.00:2	./.	0/1:0,5:30:5:1.00:2	./.	./.	./.	0/1:0,6:29:6:1.00:2	./.	./.	0/1:5,3:32:8:0.375:2
chr20	61472039	rs34911725	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,37:33:101:0.366:2	./.
chr20	61472073	rs1048100	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:34,18:30:52:0.346:2	0/1:25,8:31:33:0.242:2	./.	./.	./.	./.	./.	./.	./.	0/1:39,48:31:87:0.552:2	./.
chr20	61477177	rs57610632	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,47:33:91:0.516:2	./.
chr20	61488785	rs2294996	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:36,22:33:58:0.379:2	0/1:27,24:33:51:0.471:2	./.	./.	./.	./.	./.	0/1:0,91:32:91:1.00:2	./.	0/1:35,25:33:60:0.417:2	./.
chr20	61491494	rs17854409	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:56,58:33:114:0.509:2	0/1:32,28:33:60:0.467:2	./.	./.	./.	./.	./.	./.	./.	0/1:48,66:33:114:0.579:2	./.
chr20	61512149	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,24:31:56:0.429:2	0/1:18,19:31:37:0.514:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	61512185	rs41282984	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,46:33:102:0.451:2	./.	./.	./.	./.	./.	./.
chr20	61512606	rs910148	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	0/1:0,2:29:2:1.00:2	./.	./.	0/1:0,2:28:2:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,5:29:5:1.00:2	./.
chr20	61512687	rs118103955	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,12:29:14:0.857:2	./.	./.	./.
chr20	61513649	rs6011441	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,41:32:72:0.569:2	./.	./.	./.	./.	./.	./.
chr20	61522352	rs150928701	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,51:28:102:0.500:2	./.	./.	./.	./.
chr20	61528071	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,4:31:57:0.070:2	./.	./.	./.	./.	./.	./.	./.
chr20	61528074	rs910149	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:2,44:28:46:0.957:2	0/1:0,32:29:32:1.00:2	./.	0/1:29,22:28:51:0.431:2	./.	./.	0/1:39,15:27:54:0.278:2	./.	./.	0/1:17,14:26:31:0.452:2	0/1:30,12:26:42:0.286:2
chr20	61528197	.	T	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:60,12:24:72:0.167:2	./.	./.	0/1:76,33:19:110:0.303:2	0/1:77,20:17:97:0.206:2	0/1:78,16:21:94:0.170:2	0/1:59,20:16:79:0.253:2	0/1:70,28:15:98:0.286:2	0/1:95,12:18:107:0.112:2	0/1:44,6:21:50:0.120:2	0/1:70,18:23:88:0.205:2
chr20	61528271	rs1883847	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:3,91:32:94:0.968:2	0/1:2,51:32:53:0.962:2	./.	0/1:57,63:31:120:0.525:2	./.	./.	0/1:51,56:31:107:0.523:2	./.	./.	./.	./.
chr20	61528306	rs1883848	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,72:28:73:0.986:2	0/1:1,48:29:49:0.980:2	./.	0/1:44,45:30:90:0.506:2	./.	./.	0/1:43,46:29:89:0.517:2	./.	./.	0/1:32,33:29:65:0.508:2	0/1:51,49:29:101:0.490:2
chr20	61536938	rs2295000	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,33:31:84:0.393:2	0/1:44,44:32:88:0.500:2
chr20	61542632	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,19:33:42:0.452:2	0/1:15,21:32:36:0.583:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	61542846	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.	./.	./.	./.	./.
chr20	61588159	rs2245341	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:28:36:1.00:2	0/1:0,26:28:26:1.00:2	0/1:0,7:28:7:1.00:2	0/1:0,51:27:51:1.00:2	0/1:53,23:27:76:0.303:2	0/1:0,71:27:71:1.00:2	0/1:1,39:26:40:0.975:2	0/1:0,59:27:59:1.00:2	0/1:0,50:27:50:1.00:2	0/1:0,36:26:36:1.00:2	0/1:0,32:26:32:1.00:2
chr20	61594679	rs2427463	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:33:38:1.00:2	0/1:0,24:33:25:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,59:33:59:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,57:34:57:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,33:31:33:1.00:2
chr20	61594943	rs151228610	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,59:31:110:0.536:2	./.	./.	./.	./.	./.	./.
chr20	61595636	rs2248900	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,73:31:167:0.437:2	0/1:90,87:31:177:0.492:2	./.	./.	./.	./.	./.
chr20	61598820	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,5:29:99:0.051:2	./.	./.
chr20	61637445	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,9:31:14:0.643:2	./.	./.	./.	./.	./.
chr20	61834092	rs41282994	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,15:32:45:0.333:2	./.	./.
chr20	61834695	rs6122103	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,21:32:43:0.488:2	./.	./.	0/1:34,18:32:52:0.346:2	0/1:15,21:33:36:0.583:2	0/1:13,13:31:26:0.500:2	./.
chr20	61834842	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,4:29:50:0.080:2	./.	./.	./.	./.	./.	./.	./.
chr20	61869607	rs6010878	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,9:31:16:0.563:2	0/1:1,2:33:3:0.667:2	./.	0/1:0,7:31:7:1.00:2	0/1:0,7:31:7:1.00:2	0/1:6,8:29:14:0.571:2	0/1:2,4:32:6:0.667:2	0/1:0,4:30:4:1.00:2	0/1:3,5:33:8:0.625:2	0/1:0,8:32:8:1.00:2	0/1:3,3:30:6:0.500:2
chr20	61869826	rs2273487	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,9:33:22:0.409:2	0/1:8,8:31:16:0.500:2	./.	0/1:0,21:31:21:1.00:2	0/1:0,18:31:18:1.00:2	./.	0/1:9,12:31:21:0.571:2	0/1:10,11:31:21:0.524:2	./.	./.	0/1:14,23:31:37:0.622:2
chr20	61870727	rs1077019	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:33:6:0.667:2	./.	0/1:9,6:31:15:0.400:2	0/1:13,10:33:23:0.435:2	./.	./.
chr20	61873080	rs1047819	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,32:30:83:0.395:2	0/1:41,20:31:61:0.328:2	0/1:14,7:32:21:0.333:2	0/1:0,132:30:132:1.00:2	0/1:0,124:30:124:1.00:2	./.	0/1:78,55:29:133:0.414:2	0/1:91,52:30:144:0.364:2	./.	./.	0/1:41,51:30:92:0.554:2
chr20	61875909	rs73153507	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,14:32:28:0.500:2	./.	0/1:11,9:33:20:0.450:2	0/1:11,8:33:19:0.421:2	./.	./.
chr20	61878950	rs872808	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:32:56:1.00:2	0/1:0,33:33:33:1.00:2	0/1:9,9:32:18:0.500:2	0/1:0,69:33:69:1.00:2	0/1:2,69:32:71:0.972:2	./.	0/1:62,30:33:92:0.326:2	0/1:52,38:32:90:0.422:2	./.	./.	0/1:41,19:33:60:0.317:2
chr20	61879009	rs2236194	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,44:30:77:0.571:2	./.	0/1:15,30:30:45:0.667:2	0/1:23,39:32:62:0.629:2	./.	./.
chr20	61879074	rs11906010	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,40:30:88:0.460:2	0/1:36,28:31:64:0.438:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	61880169	rs1129659	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,11:32:11:1.00:2	0/1:0,7:32:7:1.00:2	0/1:5,4:30:9:0.444:2	0/1:6,24:32:30:0.800:2	0/1:0,19:33:19:1.00:2	./.	0/1:14,10:31:24:0.417:2	0/1:22,16:32:38:0.421:2	./.	./.	0/1:6,16:31:22:0.727:2
chr20	61881296	rs927081	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:28:74:1.00:2	0/1:0,47:28:47:1.00:2	0/1:9,12:30:21:0.571:2	0/1:0,122:29:122:1.00:2	0/1:0,157:29:157:1.00:2	0/1:60,86:29:146:0.589:2	0/1:83,92:29:175:0.526:2	0/1:2,165:29:167:0.988:2	0/1:56,49:28:105:0.467:2	0/1:59,34:29:93:0.366:2	0/1:48,45:28:93:0.484:2
chr20	61907982	rs11542296	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:28:6:0.500:2	./.	./.	0/1:53,58:31:111:0.523:2	0/1:51,47:30:98:0.480:2	0/1:75,57:29:133:0.432:2	./.	./.	./.
chr20	61912715	rs2236195	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,10:27:11:0.909:2	0/1:0,11:27:11:1.00:2	./.	0/1:2,3:28:5:0.600:2	0/1:0,13:28:13:1.00:2	0/1:0,15:29:15:1.00:2	0/1:5,5:30:10:0.500:2	0/1:9,6:28:15:0.400:2	./.	./.	0/1:5,4:28:9:0.444:2
chr20	61917425	rs78818145	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,26:32:56:0.464:2	0/1:18,29:32:47:0.617:2	0/1:34,27:32:61:0.443:2	./.	./.	./.
chr20	61919034	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,4:29:39:0.103:2	./.
chr20	61937296	rs753686	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,3:30:26:0.115:2	./.	./.	./.	./.	./.	./.	./.	0/1:11,14:33:25:0.560:2	0/1:0,23:32:23:1.00:2	./.
chr20	61941747	rs4809287	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:31:41:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,51:31:51:1.00:2	0/1:0,68:31:68:1.00:2	0/1:0,43:30:44:1.00:2	0/1:0,85:30:85:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,67:30:68:1.00:2	0/1:0,28:29:28:1.00:2
chr20	61944193	rs4809530	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,7:29:15:0.467:2	./.	./.	./.	0/1:43,34:29:77:0.442:2	./.	./.	./.	./.
chr20	61944243	rs143321165	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,37:31:92:0.402:2	./.	./.	./.	./.	./.
chr20	61944494	rs113242150	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,35:30:88:0.398:2	./.	./.	./.	./.	./.
chr20	61945439	rs147670144	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,6:31:22:0.273:2	./.	./.	./.	0/1:99,56:31:155:0.361:2	./.	./.	./.	./.
chr20	61951489	rs6089881	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,5:26:5:1.00:2	0/1:0,3:26:3:1.00:2	./.	0/1:0,7:27:7:1.00:2	0/1:0,9:26:9:1.00:2	0/1:0,3:27:3:1.00:2	./.	0/1:0,6:27:6:1.00:2	0/1:0,8:27:8:1.00:2	./.	0/1:0,7:28:7:1.00:2
chr20	61953406	rs374875816	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:33:57:0.070:2	./.
chr20	61956782	rs2314251	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:47,34:33:81:0.420:2	0/1:26,14:31:40:0.350:2	./.	0/1:62,36:32:98:0.367:2	0/1:0,72:31:72:1.00:2	0/1:76,69:33:145:0.476:2	0/1:75,71:32:146:0.486:2	0/1:2,129:32:131:0.985:2	0/1:1,91:33:93:0.989:2	0/1:43,48:33:91:0.527:2	0/1:0,67:33:67:1.00:2
chr20	61957430	rs41309941	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,7:31:11:0.636:2	0/1:33,35:30:69:0.515:2	./.	./.	./.	./.	./.	./.	./.
chr20	61957480	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:31:60:0.067:2
chr20	61959779	rs376331855	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,12:28:27:0.444:2	./.	./.	./.	./.	./.
chr20	61959800	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,4:32:20:0.200:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	61981104	rs1044397	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,4:28:6:0.667:2	0/1:1,5:25:6:0.833:2	./.	0/1:4,5:29:9:0.556:2	0/1:0,9:31:9:1.00:2	0/1:6,10:25:16:0.625:2	0/1:4,5:29:9:0.556:2	0/1:6,8:27:14:0.571:2	0/1:8,10:28:18:0.556:2	./.	0/1:0,3:23:3:1.00:2
chr20	61981134	rs1044396	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,5:32:10:0.500:2	0/1:4,7:31:11:0.636:2	./.	0/1:7,6:27:13:0.462:2	0/1:0,14:29:14:1.00:2	0/1:10,17:28:27:0.630:2	0/1:10,7:28:17:0.412:2	0/1:9,19:31:28:0.679:2	./.	./.	0/1:0,6:32:6:1.00:2
chr20	61981536	rs2229960	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:30:31:1.00:2	0/1:0,32:29:32:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,59:30:59:1.00:2	0/1:0,77:30:77:1.00:2	0/1:0,41:28:41:1.00:2	0/1:0,58:29:59:1.00:2	0/1:0,53:30:53:1.00:2	0/1:1,53:30:54:0.981:2	0/1:0,26:29:26:1.00:2
chr20	61981554	rs2229959	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:31:32:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,70:31:70:1.00:2	0/1:0,25:30:26:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,48:32:48:1.00:2	0/1:23,23:30:46:0.500:2	0/1:0,22:28:22:1.00:2
chr20	61982085	rs1044394	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:29:73:1.00:2	0/1:0,56:28:56:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,112:28:112:1.00:2	0/1:0,76:29:76:1.00:2	0/1:0,108:28:108:1.00:2	0/1:1,92:28:93:0.989:2	0/1:2,109:28:111:0.982:2	0/1:38,43:30:81:0.531:2	0/1:0,68:28:69:1.00:2	0/1:0,68:28:68:1.00:2
chr20	61982124	rs1044393	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:28:82:1.00:2	0/1:0,67:27:67:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,140:28:140:1.00:2	0/1:0,110:27:110:1.00:2	0/1:0,119:28:119:1.00:2	0/1:0,143:27:143:1.00:2	0/1:3,133:28:136:0.978:2	0/1:0,115:29:115:1.00:2	0/1:54,43:27:97:0.443:2	0/1:0,76:28:77:1.00:2
chr20	61990939	rs2273506	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,23:31:66:0.348:2	./.
chr20	62038277	rs1801475	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,7:31:12:0.583:2	0/1:7,6:29:13:0.462:2	./.	./.	0/1:1,16:30:17:0.941:2	0/1:11,10:30:21:0.476:2	0/1:9,9:31:18:0.500:2	./.	0/1:0,16:31:16:1.00:2	./.	0/1:6,8:31:14:0.571:2
chr20	62043227	rs62208003	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,14:30:28:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr20	62044686	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,12:16:108:0.111:2	./.	./.	./.
chr20	62046278	rs1801545	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,11:27:33:0.333:2	0/1:15,13:27:28:0.464:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	62070966	rs2297385	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,52:31:131:0.397:2	./.	./.	./.	0/1:70,45:30:115:0.391:2	./.
chr20	62126185	rs310617	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,34:26:34:1.00:2	0/1:0,10:27:10:1.00:2	./.	0/1:0,44:27:44:1.00:2	0/1:0,46:27:46:1.00:2	0/1:0,30:27:30:1.00:2	0/1:24,23:26:47:0.489:2	0/1:25,30:26:55:0.545:2	./.	0/1:10,9:28:19:0.474:2	./.
chr20	62126223	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:26:51:0.078:2
chr20	62126299	rs2274860	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,6:32:22:0.273:2	./.	./.	./.	./.	./.	./.	0/1:61,45:32:106:0.425:2	./.
chr20	62127326	rs3818681	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,91:30:193:0.472:2	./.	./.	./.	./.	./.	./.
chr20	62153028	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,5:31:128:0.039:2	./.
chr20	62153311	rs1139147	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.
chr20	62172219	rs6122130	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:31:10:0.500:2	./.	0/1:0,55:30:55:1.00:2	./.	./.	./.	./.	./.	./.
chr20	62172244	rs33933649	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,9:32:24:0.375:2	./.	./.	0/1:7,5:32:12:0.417:2	./.
chr20	62173562	rs56130722	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	0/1:0,98:30:98:1.00:2	./.	./.	./.	./.	./.	./.
chr20	62173860	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:128:0.031:2	./.
chr20	62174724	rs4809309	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	0/1:0,20:31:20:1.00:2	./.	./.	./.	./.	./.	./.
chr20	62187126	rs148340283	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,35:30:88:0.398:2	./.	./.	./.	./.	./.	./.
chr20	62187187	rs3746348	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:34,23:32:57:0.404:2	0/1:14,14:31:28:0.500:2	0/1:0,15:32:15:1.00:2	./.	./.	0/1:27,26:32:53:0.491:2	0/1:13,14:31:27:0.519:2	./.	./.	0/1:2,44:31:46:0.957:2	./.
chr20	62187325	rs200404643	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:31:11:0.273:2	./.	./.	./.	./.	./.	./.	./.
chr20	62191321	rs3810477	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:28:38:1.00:2	0/1:0,15:28:15:1.00:2	0/1:1,4:29:5:0.800:2	0/1:29,26:28:55:0.473:2	0/1:52,35:28:87:0.402:2	0/1:36,27:27:63:0.429:2	0/1:0,79:28:79:1.00:2	./.	0/1:31,19:29:50:0.380:2	0/1:0,28:29:28:1.00:2	./.
chr20	62191558	rs3810479	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:11,15:32:26:0.577:2	0/1:9,7:31:16:0.438:2	./.	0/1:10,14:32:24:0.583:2	./.	./.	./.	./.	./.	./.	./.
chr20	62191937	rs11551685	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:31:7:0.571:2	./.	0/1:22,35:30:57:0.614:2	./.	./.	./.	./.	./.	./.
chr20	62193019	rs11551684	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:25,20:32:45:0.444:2	0/1:14,13:31:27:0.481:2	./.	0/1:48,32:32:80:0.400:2	./.	0/1:32,42:31:74:0.568:2	./.	./.	./.	./.	./.
chr20	62193045	rs142771646	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,4:34:34:0.118:2	./.	./.
chr20	62193445	rs3810481	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:25,15:31:40:0.375:2	0/1:4,7:28:11:0.636:2	./.	0/1:7,10:31:17:0.588:2	./.	0/1:14,14:31:28:0.500:2	./.	./.	./.	./.	./.
chr20	62194030	rs3810483	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,15:32:35:0.429:2	0/1:14,11:31:25:0.440:2	./.	0/1:32,29:33:61:0.475:2	0/1:17,8:32:25:0.320:2	0/1:31,23:32:54:0.426:2	0/1:8,10:30:18:0.556:2	./.	0/1:49,3:34:52:0.058:2	0/1:31,23:32:54:0.426:2	./.
chr20	62194103	rs3810484	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:29:7:0.429:2	./.
chr20	62194128	rs3810485	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,7:29:12:0.583:2	./.	0/1:7,5:33:12:0.417:2	./.	./.	./.	./.
chr20	62194238	rs34996572	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,27:31:44:0.614:2	./.	./.	./.	./.	./.	./.	0/1:7,19:31:26:0.731:2
chr20	62195087	rs310630	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,5:31:15:0.333:2	./.	0/1:0,6:29:6:1.00:2	0/1:10,13:30:23:0.565:2	./.	0/1:13,10:28:23:0.435:2	./.	0/1:0,13:28:13:1.00:2	0/1:4,4:32:8:0.500:2	./.	./.
chr20	62195672	rs3827023	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,5:30:7:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	62196033	rs3810487	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:2,8:32:10:0.800:2	0/1:9,7:32:16:0.438:2	./.	0/1:5,7:31:12:0.583:2	./.	0/1:13,9:30:22:0.409:2	./.	./.	./.	./.	./.
chr20	62196182	rs3810488	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:21,30:30:51:0.588:2	0/1:23,13:28:36:0.361:2	./.	0/1:44,37:29:81:0.457:2	./.	0/1:52,32:29:84:0.381:2	./.	./.	./.	./.	./.
chr20	62196253	rs310631	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,4:30:13:0.308:2	0/1:38,40:30:78:0.513:2	./.	0/1:47,45:30:92:0.489:2	./.	0/1:4,87:30:91:0.956:2	0/1:26,36:32:62:0.581:2	./.	0/1:13,24:28:37:0.649:2
chr20	62196807	rs310632	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:31:6:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,4:23:4:1.00:2	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.
chr20	62196884	rs310633	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,9:29:9:1.00:2	0/1:0,6:28:6:1.00:2	./.	0/1:1,8:27:9:0.889:2	0/1:9,8:27:17:0.471:2	0/1:2,17:28:19:0.895:2	0/1:0,4:30:4:1.00:2	0/1:0,7:27:7:1.00:2	0/1:0,5:26:5:1.00:2	0/1:0,10:27:10:1.00:2	./.
chr20	62197568	rs61742585	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	62198236	rs415304	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:31:4:1.00:2	0/1:15,17:31:32:0.531:2	0/1:21,23:31:44:0.523:2	0/1:4,19:30:23:0.826:2	0/1:0,38:32:38:1.00:2	0/1:1,36:31:37:0.973:2	0/1:0,28:32:28:1.00:2	0/1:0,23:32:23:1.00:2	0/1:6,5:31:11:0.455:2
chr20	62198348	rs438363	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,16:30:33:0.485:2	0/1:9,18:30:27:0.667:2	0/1:0,7:31:7:1.00:2	0/1:0,35:29:36:1.00:2	0/1:12,17:29:29:0.586:2	0/1:0,39:29:39:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,30:30:30:1.00:2	0/1:8,7:31:15:0.467:2
chr20	62198662	rs367440	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:27:6:1.00:2	./.	0/1:0,8:26:8:1.00:2	0/1:0,2:27:2:1.00:2	0/1:0,4:27:4:1.00:2	0/1:0,3:28:3:1.00:2	0/1:0,4:29:4:1.00:2	./.
chr20	62200265	rs111418552	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,12:31:23:0.522:2	0/1:13,5:31:18:0.278:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	62200575	rs1741594	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,7:31:22:0.318:2	0/1:2,3:32:5:0.600:2	0/1:0,3:27:3:1.00:2	0/1:0,24:30:24:1.00:2	0/1:19,21:28:40:0.525:2	0/1:0,29:30:29:1.00:2	0/1:0,29:29:29:1.00:2	0/1:0,42:28:42:1.00:2	0/1:0,36:29:37:1.00:2	0/1:0,32:28:32:1.00:2	0/1:14,9:29:23:0.391:2
chr20	62200576	rs6090457	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:15,7:30:22:0.318:2	0/1:2,3:31:5:0.600:2	./.	0/1:14,10:30:24:0.417:2	./.	0/1:15,15:31:30:0.500:2	0/1:26,3:32:29:0.103:2	./.	./.	./.	./.
chr20	62200860	rs1757752	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:8,10:29:18:0.556:2	0/1:8,5:30:13:0.385:2	0/1:0,3:29:3:1.00:2	0/1:0,27:30:27:1.00:2	0/1:16,9:28:25:0.360:2	0/1:0,24:29:24:1.00:2	0/1:1,17:29:18:0.944:2	0/1:1,21:29:22:0.955:2	0/1:0,26:30:26:1.00:2	0/1:0,7:26:7:1.00:2	0/1:10,7:27:17:0.412:2
chr20	62221610	rs311496	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,19:31:50:0.380:2	0/1:8,7:32:15:0.467:2	0/1:0,5:30:5:1.00:2	0/1:0,26:32:26:1.00:2	0/1:22,10:32:32:0.313:2	0/1:0,44:32:44:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,32:33:32:1.00:2	0/1:0,21:31:21:1.00:2	./.
chr20	62221766	rs2297428	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,12:33:18:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	62221808	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:24:7:0.571:2
chr20	62227081	rs311489	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:68,49:29:117:0.419:2	0/1:30,43:29:73:0.589:2	0/1:3,27:29:30:0.900:2	0/1:2,167:29:169:0.988:2	0/1:88,101:28:189:0.534:2	0/1:0,169:29:169:1.00:2	0/1:0,163:29:163:1.00:2	0/1:0,168:29:168:1.00:2	0/1:0,166:30:166:1.00:2	0/1:0,144:30:144:1.00:2	./.
chr20	62236148	rs6090471	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,22:29:22:1.00:2	0/1:0,12:29:12:1.00:2	./.	0/1:0,26:29:26:1.00:2	0/1:0,45:29:45:1.00:2	0/1:0,21:28:21:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,30:29:30:1.00:2	0/1:1,34:30:35:0.971:2	0/1:0,18:28:18:1.00:2	0/1:22,20:29:42:0.476:2
chr20	62272761	rs181370706	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,9:28:19:0.474:2	0/1:7,11:27:18:0.611:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	62275140	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	62290799	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:147,5:31:153:0.033:2	./.	./.	./.	./.	./.	./.
chr20	62293272	rs3848668	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:35,24:32:59:0.407:2	0/1:21,16:32:37:0.432:2	0/1:6,7:32:13:0.538:2	./.	0/1:50,33:32:83:0.398:2	0/1:44,59:33:103:0.573:2	./.	./.	./.	./.	0/1:43,26:32:69:0.377:2
chr20	62293764	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,4:32:60:0.067:2
chr20	62293882	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:119,4:30:123:0.033:2	./.	./.	./.	./.	./.	./.
chr20	62297400	rs73920935	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:24,18:30:42:0.429:2	0/1:11,6:29:17:0.353:2	./.	./.	0/1:35,21:29:56:0.375:2	0/1:18,21:30:39:0.538:2	./.	./.	./.	./.	0/1:16,34:28:50:0.680:2
chr20	62298840	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:31:159:0.025:2	./.	./.	./.	./.	./.
chr20	62309554	rs41309367	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,38:33:67:0.567:2	0/1:15,18:33:33:0.545:2	0/1:9,3:33:12:0.250:2	0/1:0,78:32:78:1.00:2	0/1:80,54:31:134:0.403:2	0/1:40,50:32:90:0.556:2	0/1:1,81:33:82:0.988:2	0/1:1,112:32:113:0.991:2	0/1:0,71:33:71:1.00:2	0/1:0,50:32:50:1.00:2	./.
chr20	62309640	rs41310197	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,29:32:74:0.392:2	./.	./.	./.	./.	0/1:24,18:32:42:0.429:2	./.	./.
chr20	62319464	rs2738785	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,29:31:31:0.935:2	0/1:0,19:31:19:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,30:31:30:1.00:2	0/1:0,27:32:27:1.00:2	0/1:1,29:33:30:0.967:2	0/1:0,37:33:37:1.00:2	0/1:1,35:32:36:0.972:2	0/1:0,20:29:20:1.00:2	0/1:23,20:29:43:0.465:2
chr20	62319561	rs2777940	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,13:29:21:0.619:2	./.	0/1:13,7:31:20:0.350:2	./.	./.	0/1:4,3:28:7:0.429:2	./.
chr20	62320968	rs6062302	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:27:33:1.00:2	0/1:0,13:27:13:1.00:2	0/1:0,6:28:6:1.00:2	0/1:0,37:28:37:1.00:2	0/1:2,63:28:65:0.969:2	0/1:0,40:28:40:1.00:2	0/1:1,66:26:67:0.985:2	0/1:1,53:27:54:0.981:2	0/1:0,58:29:58:1.00:2	0/1:0,43:28:43:1.00:2	0/1:16,11:28:27:0.407:2
chr20	62321189	rs61753459	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,16:32:40:0.400:2	0/1:6,9:31:16:0.600:2	./.
chr20	62321655	rs2236506	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:29:42:1.00:2	0/1:0,26:29:26:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,44:29:45:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,40:28:40:1.00:2	0/1:5,24:29:29:0.828:2	0/1:1,46:29:48:0.979:2	0/1:0,44:30:44:1.00:2	0/1:0,32:29:32:1.00:2	0/1:19,24:29:43:0.558:2
chr20	62322288	rs3208007	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,5:27:5:1.00:2	0/1:0,2:28:2:1.00:2	0/1:0,2:28:2:1.00:2	0/1:0,2:29:2:1.00:2	./.	./.	0/1:0,2:28:2:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,3:28:3:1.00:2	./.
chr20	62324289	rs3848672	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:25,14:27:39:0.359:2	0/1:14,13:31:27:0.481:2	./.	0/1:36,18:29:54:0.333:2	0/1:50,32:29:82:0.390:2	./.	./.	./.	0/1:28,18:32:46:0.391:2	./.	0/1:35,17:29:52:0.327:2
chr20	62324290	rs61736615	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,22:28:40:0.564:2	./.
chr20	62325833	rs115610405	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,41:31:70:0.586:2	0/1:28,25:31:53:0.472:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	62326110	rs3208008	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,4:29:8:0.500:2	./.	./.	0/1:0,7:32:7:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,3:33:3:1.00:2	0/1:0,4:30:4:1.00:2
chr20	62327126	rs141522376	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,26:32:66:0.394:2	0/1:17,15:32:32:0.469:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	62327199	rs1056990	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,27:30:62:0.435:2	0/1:2,103:30:105:0.981:2	./.	./.	./.
chr20	62328267	rs2257440	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,5:29:7:0.714:2	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	62328375	rs2738787	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,9:32:9:1.00:2	0/1:0,3:33:3:1.00:2	./.	0/1:0,7:32:7:1.00:2	0/1:0,19:32:19:1.00:2	0/1:13,10:32:23:0.435:2	0/1:0,14:33:14:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,6:32:6:1.00:2
chr20	62328453	rs2258056	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	62328480	rs55765053	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,13:31:19:0.684:2	0/1:7,4:30:11:0.364:2	./.	./.	./.	0/1:4,6:32:10:0.600:2	./.	./.
chr20	62328531	rs189756453	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,8:30:8:1.00:2	./.	./.	./.
chr20	62328742	rs909341	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,44:31:79:0.557:2	0/1:20,29:31:49:0.592:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	62328829	rs1291205	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,42:32:82:0.512:2	0/1:17,36:30:53:0.679:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	62331989	rs1048665	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,10:27:23:0.435:2	0/1:12,4:27:16:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	62332641	rs2257818	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,18:28:45:0.400:2	0/1:24,14:29:38:0.368:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr20	62340115	rs1291212	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,28:32:28:1.00:2	0/1:1,6:31:7:0.857:2	0/1:3,50:32:53:0.943:2	0/1:0,56:31:56:1.00:2	0/1:30,37:32:67:0.552:2	0/1:0,49:31:49:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,60:33:60:1.00:2	0/1:0,45:31:45:1.00:2	0/1:17,13:32:30:0.433:2
chr20	62340280	rs199530246	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,11:15:41:0.275:2	./.	./.	./.	./.
chr20	62340424	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,9:15:29:0.310:2	0/1:35,11:11:46:0.239:2	./.	./.	./.	./.
chr20	62369997	rs1151625	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	./.	0/1:12,9:29:21:0.429:2	./.	./.	./.	./.	0/1:4,7:31:11:0.636:2
chr20	62372813	rs2427536	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:33:34:1.00:2	0/1:0,23:31:23:1.00:2	0/1:3,3:32:6:0.500:2	0/1:0,65:32:65:1.00:2	0/1:0,55:32:55:1.00:2	0/1:43,37:32:80:0.463:2	0/1:0,58:31:58:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,73:33:73:1.00:2	0/1:0,82:32:82:1.00:2	0/1:46,34:32:80:0.425:2
chr20	62373707	rs8957	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,21:31:55:0.382:2	0/1:32,13:32:45:0.289:2	0/1:6,11:32:17:0.647:2	0/1:0,106:31:106:1.00:2	0/1:3,142:30:145:0.979:2	0/1:66,52:30:118:0.441:2	0/1:1,170:31:171:0.994:2	0/1:0,137:30:137:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,56:31:56:1.00:2	0/1:38,25:31:63:0.397:2
chr20	62378349	rs5019252	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,5:30:7:0.714:2	./.	0/1:0,6:31:6:1.00:2	0/1:0,5:31:5:1.00:2	./.	./.	0/1:6,6:29:12:0.500:2
chr20	62378364	rs12625387	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,5:32:7:0.714:2	./.	0/1:0,6:32:6:1.00:2	0/1:0,6:33:6:1.00:2	./.	./.	0/1:6,5:33:11:0.455:2
chr20	62378418	rs74552928	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:33:5:0.600:2	0/1:2,2:33:4:0.500:2	./.
chr20	62384096	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:30:63:0.063:2	./.	./.	./.
chr20	62407104	rs3827026	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,27:29:56:0.482:2	./.	./.	./.	./.	./.	0/1:38,22:30:60:0.367:2	./.
chr20	62407176	rs35738769	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,19:30:38:0.500:2	./.	./.	0/1:15,5:31:20:0.250:2	0/1:0,44:31:44:1.00:2	./.	./.	./.
chr20	62421622	rs755017	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.	./.	0/1:26,27:27:53:0.509:2	./.	./.	./.	./.	./.
chr20	62422080	rs2281929	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,15:29:34:0.441:2	./.	./.	./.	./.	./.
chr20	62475140	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,31:31:69:0.449:2	./.	./.	./.	./.	./.	./.	./.
chr20	62562856	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:33:48:0.083:2	./.	./.	./.	./.	./.
chr20	62571419	rs200504039	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:25:9:0.333:2	./.
chr20	62574006	rs73147065	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,18:32:43:0.419:2	0/1:25,14:30:39:0.359:2	./.	./.	./.	./.	0/1:15,12:31:27:0.444:2
chr20	62575959	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:34:185:0.022:2	./.	./.
chr20	62575989	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,21:11:107:0.196:2	./.	./.	0/1:91,26:9:117:0.222:2	0/1:124,24:10:151:0.162:2	./.	./.
chr20	62576991	rs2252258	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:31,34:32:65:0.523:2	0/1:17,24:32:41:0.585:2	0/1:4,5:32:9:0.556:2	./.	./.	./.	./.	0/1:71,61:32:132:0.462:2	./.	0/1:1,63:32:64:0.984:2	./.
chr20	62591460	rs45570933	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,40:31:89:0.449:2
chr20	62595169	rs817325	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,55:32:56:0.982:2	0/1:0,42:32:42:1.00:2	./.	0/1:2,77:32:79:0.975:2	0/1:0,119:32:119:1.00:2	0/1:56,47:32:103:0.456:2	./.	0/1:2,115:32:117:0.983:2	0/1:0,83:33:83:1.00:2	./.	0/1:1,56:32:57:0.982:2
chr20	62595547	rs6062599	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:19,18:30:37:0.486:2	0/1:23,14:30:37:0.378:2	./.	0/1:28,17:30:45:0.378:2	./.	0/1:33,20:30:53:0.377:2	./.	0/1:28,26:32:54:0.481:2	0/1:23,20:32:43:0.465:2	./.	./.
chr20	62595659	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,5:28:63:0.081:2	./.
chr20	62595990	rs817326	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:35,30:29:66:0.462:2	0/1:15,21:29:36:0.583:2	./.	0/1:62,54:30:116:0.466:2	./.	0/1:50,57:30:107:0.533:2	./.	0/1:74,49:29:123:0.398:2	0/1:44,39:30:83:0.470:2	./.	./.
chr20	62597501	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:33:183:0.022:2
chr20	62597666	rs45486695	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:77,72:31:149:0.483:2	0/1:83,98:31:181:0.541:2	./.	0/1:94,71:31:165:0.430:2	./.	0/1:81,72:30:153:0.471:2	./.	0/1:96,77:30:173:0.445:2	0/1:89,82:31:171:0.480:2	./.	./.
chr20	62597694	rs817329	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,163:31:165:0.988:2	0/1:1,183:32:184:0.995:2	0/1:30,30:31:60:0.500:2	0/1:2,178:32:180:0.989:2	0/1:1,187:32:188:0.995:2	0/1:105,83:32:188:0.441:2	./.	0/1:4,185:32:190:0.979:2	0/1:1,183:32:184:0.995:2	./.	0/1:0,177:31:179:1.00:2
chr20	62598038	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,29:28:53:0.547:2	./.	./.
chr20	62598815	rs817330	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:1,19:31:20:0.950:2	./.	0/1:0,78:32:78:1.00:2	0/1:2,51:31:54:0.962:2	0/1:46,39:32:85:0.459:2	./.	0/1:1,76:32:77:0.987:2	0/1:2,66:33:68:0.971:2	./.	./.
chr20	62607160	rs817343	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:31:9:0.444:2	0/1:2,10:32:12:0.833:2	./.	./.	0/1:11,15:32:26:0.577:2	./.	./.	0/1:11,22:32:33:0.667:2	./.	./.	./.
chr20	62608665	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:126,4:30:130:0.031:2	./.	./.	./.	./.	./.	./.
chr20	62608709	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:32:166:0.024:2	./.	./.	./.	./.	./.
chr20	62609670	rs817348	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:15,9:34:24:0.375:2	0/1:8,6:29:14:0.429:2	./.	./.	0/1:19,15:33:34:0.441:2	./.	./.	0/1:27,11:31:38:0.289:2	./.	./.	./.
chr20	62612675	rs45566234	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:32:6:0.500:2	./.	./.	./.	0/1:6,7:29:13:0.538:2	./.	./.	./.	./.	./.	./.
chr20	62654205	rs199531389	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:34:148:0.027:2	./.	./.
chr20	62670369	rs118165004	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:33:5:0.600:2	0/1:5,6:31:11:0.545:2	0/1:5,5:32:10:0.500:2	./.	0/1:4,3:32:7:0.429:2	0/1:0,8:33:8:1.00:2	./.	./.
chr20	62703490	rs13039439	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,29:31:52:0.558:2	./.	./.	0/1:37,43:30:80:0.538:2	0/1:0,42:31:42:1.00:2	./.	0/1:25,17:30:42:0.405:2
chr20	62714783	rs6010717	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:4,7:33:11:0.636:2	./.	0/1:20,23:33:43:0.535:2	0/1:16,25:32:41:0.610:2	0/1:0,47:32:47:1.00:2	0/1:0,47:31:47:1.00:2	0/1:34,24:32:58:0.414:2	./.	0/1:0,18:31:18:1.00:2	0/1:0,20:30:20:1.00:2
chr20	62724253	rs55872076	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,63:33:116:0.543:2
chr20	62729431	rs2229205	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:55,48:30:103:0.466:2	0/1:37,32:30:69:0.464:2	./.	./.	./.	./.	0/1:93,58:29:151:0.384:2	./.	./.	./.	0/1:52,53:30:105:0.505:2
chr20	62737318	rs13036542	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:24,29:32:53:0.547:2	0/1:15,14:30:29:0.483:2	./.	0/1:19,39:32:58:0.672:2	./.	0/1:29,33:31:62:0.532:2	0/1:69,52:31:121:0.430:2	./.	./.	./.	0/1:0,40:33:41:1.00:2
chr20	62737537	rs4809400	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,36:31:90:0.400:2	0/1:40,40:31:80:0.500:2	0/1:32,31:31:63:0.492:2	0/1:72,47:31:119:0.395:2	./.	0/1:0,56:31:56:1.00:2	./.
chr20	62737568	rs4809401	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,49:30:114:0.430:2	0/1:46,45:30:91:0.495:2	0/1:38,38:31:76:0.500:2	0/1:79,55:29:134:0.410:2	./.	0/1:0,49:30:49:1.00:2	./.
chr20	62738311	rs35368587	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,20:31:31:0.645:2	0/1:23,12:31:35:0.343:2	0/1:17,13:31:30:0.433:2	0/1:19,17:31:36:0.472:2	./.	0/1:2,15:32:17:0.882:2	./.
chr20	62830290	rs2295450	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,23:31:37:0.622:2	./.	./.	./.	./.	./.	0/1:41,28:32:69:0.406:2
chr20	62836382	rs2273443	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:78,39:32:117:0.333:2	./.	./.	./.	./.	./.	0/1:41,21:33:62:0.339:2
chr20	62838981	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:32:78:0.051:2	./.	./.
chr20	62839416	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,4:27:12:0.333:2	./.	./.	./.	./.	./.
chr20	62839435	rs143133195	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,9:29:20:0.450:2	./.	./.	./.	./.
chr20	62839710	rs61746505	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,18:32:38:0.474:2	0/1:36,37:31:73:0.507:2	./.	0/1:34,28:32:62:0.452:2	./.	./.	./.	./.
chr20	62850264	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:33:58:0.070:2
chr20	62850358	rs41279348	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,55:30:115:0.478:2	./.	./.	./.	./.	./.	0/1:40,41:29:81:0.506:2
chr20	62853349	rs78568430	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,10:34:15:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr20	62858844	rs41279350	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,15:30:30:0.500:2	0/1:18,16:29:34:0.471:2	./.	0/1:23,12:32:35:0.343:2	./.	./.	./.	./.
chr20	62871232	rs3003149	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,14:31:35:0.400:2	0/1:14,8:30:22:0.364:2	./.	0/1:19,13:31:32:0.406:2	./.	./.
chr20	62896665	rs17878941	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,44:32:93:0.473:2	0/1:1,62:32:63:0.984:2	./.	./.	./.	./.	./.	0/1:74,64:33:138:0.464:2
chr21	10862598	rs3916646	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,19:32:115:0.165:2	0/1:58,16:31:74:0.216:2	./.	./.	./.	0/1:85,34:31:119:0.286:2	./.	./.	./.	./.	./.
chr21	10862599	rs3883945	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,96:33:115:0.835:2	0/1:16,55:31:71:0.775:2	0/1:6,3:29:9:0.333:2	0/1:26,144:32:170:0.847:2	0/1:1,63:32:64:0.984:2	0/1:56,67:32:123:0.545:2	0/1:3,79:32:82:0.963:2	0/1:61,79:32:140:0.564:2	0/1:30,79:33:109:0.725:2	0/1:1,94:32:95:0.989:2	0/1:56,70:32:126:0.556:2
chr21	10862618	rs3916251	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,111:33:143:0.776:2	0/1:18,63:32:81:0.778:2	0/1:0,13:33:13:1.00:2	0/1:30,165:33:195:0.846:2	0/1:0,74:32:74:1.00:2	0/1:49,103:32:152:0.678:2	0/1:2,113:33:115:0.983:2	0/1:71,107:33:178:0.601:2	0/1:0,134:33:134:1.00:2	0/1:1,118:33:119:0.992:2	0/1:50,131:32:181:0.724:2
chr21	10862846	rs3916645	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,57:33:80:0.713:2	0/1:16,48:33:64:0.750:2	0/1:0,9:32:9:1.00:2	0/1:0,103:32:103:1.00:2	0/1:0,60:32:60:1.00:2	0/1:26,77:32:103:0.748:2	0/1:0,70:32:70:1.00:2	0/1:0,111:32:111:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,64:33:64:1.00:2	0/1:0,92:31:92:1.00:2
chr21	10862853	rs1961808	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:37,44:31:81:0.543:2	0/1:29,40:32:69:0.580:2	./.	0/1:83,36:32:119:0.303:2	0/1:43,27:31:70:0.386:2	0/1:51,61:31:112:0.545:2	0/1:34,54:31:88:0.614:2	0/1:80,47:31:127:0.370:2	0/1:58,20:32:78:0.256:2	0/1:46,37:31:83:0.446:2	0/1:85,28:31:113:0.248:2
chr21	10862874	rs1807747	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,73:28:95:0.768:2	0/1:21,62:28:83:0.747:2	0/1:4,11:30:15:0.733:2	0/1:32,114:29:146:0.781:2	0/1:0,98:28:98:1.00:2	0/1:61,78:28:139:0.561:2	0/1:1,115:28:116:0.991:2	0/1:59,103:29:162:0.636:2	0/1:23,84:29:107:0.785:2	./.	0/1:52,68:27:120:0.567:2
chr21	10862947	rs3883944	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,128:32:166:0.771:2	0/1:23,65:32:88:0.739:2	0/1:8,9:31:17:0.529:2	0/1:49,135:31:184:0.734:2	0/1:0,154:31:154:1.00:2	0/1:85,105:31:190:0.553:2	0/1:2,179:31:181:0.989:2	0/1:89,97:31:186:0.522:2	0/1:65,110:32:175:0.629:2	0/1:0,173:31:174:1.00:2	0/1:61,79:31:140:0.564:2
chr21	10863064	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:32:159:0.025:2
chr21	10906915	rs169758	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,21:31:98:0.214:2	./.	./.	0/1:56,22:33:78:0.282:2	./.	./.
chr21	10906989	rs210498	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,12:31:82:0.146:2	./.	./.	0/1:74,19:33:93:0.204:2	./.	0/1:113,27:32:140:0.193:2
chr21	10907041	rs12627379	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,10:31:48:0.208:2	./.	./.	./.	./.	0/1:18,12:31:30:0.400:2	./.	./.	./.	./.	./.
chr21	10910311	rs9996	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,89:33:177:0.506:2	0/1:48,64:32:112:0.571:2	0/1:6,9:33:15:0.600:2	0/1:104,78:33:183:0.429:2	0/1:57,60:32:117:0.513:2	0/1:83,103:32:186:0.554:2	0/1:71,54:32:125:0.432:2	0/1:103,45:32:148:0.304:2	0/1:72,95:34:167:0.569:2	0/1:107,55:33:163:0.340:2	0/1:46,103:33:149:0.691:2
chr21	10910340	rs62211191	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:171,9:32:180:0.050:2	./.	./.	./.	0/1:146,16:33:162:0.099:2	./.	./.	0/1:140,18:31:158:0.114:2
chr21	10910347	rs150482	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,129:31:173:0.746:2	0/1:36,109:32:145:0.752:2	0/1:0,20:32:20:1.00:2	0/1:58,115:32:173:0.665:2	0/1:37,110:31:147:0.748:2	0/1:0,175:31:177:1.00:2	0/1:39,116:31:155:0.748:2	0/1:43,107:31:150:0.713:2	0/1:0,161:32:161:1.00:2	0/1:117,72:32:189:0.381:2	0/1:40,113:31:154:0.739:2
chr21	10920098	rs212146	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,43:32:44:0.977:2	0/1:0,23:32:23:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,19:33:19:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,43:33:43:1.00:2
chr21	10921968	rs148651545	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,33:33:185:0.178:2	./.	./.	./.	0/1:136,47:32:183:0.257:2	./.
chr21	10934115	rs149333450	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,15:32:41:0.366:2	./.	./.	./.	./.	./.	./.	./.	./.
chr21	10934978	rs74553878	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,43:32:184:0.234:2	./.	./.	./.	0/1:108,21:32:129:0.163:2	./.
chr21	10935004	rs6582917	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,20:31:159:0.126:2	./.	./.	./.	0/1:84,31:31:115:0.270:2	./.	./.	0/1:105,20:29:125:0.160:2
chr21	10942756	rs1810540	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:156,25:33:181:0.138:2	0/1:165,23:31:188:0.122:2	./.	0/1:146,31:30:178:0.175:2	./.	0/1:158,24:30:182:0.132:2	./.	0/1:144,41:31:185:0.222:2	./.	./.	0/1:167,11:32:180:0.062:2
chr21	10942923	rs76723236	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,4:31:24:0.167:2	./.	0/1:139,32:30:172:0.187:2	./.	./.	./.	0/1:88,104:31:193:0.542:2	./.	0/1:159,34:30:193:0.176:2
chr21	10942981	rs78225807	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,16:32:111:0.144:2	0/1:83,10:32:93:0.108:2	./.	./.	./.	0/1:102,10:31:112:0.089:2	./.	./.	./.	./.	./.
chr21	10943003	rs1810856	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:78,14:31:92:0.152:2	0/1:60,8:31:68:0.118:2	./.	0/1:85,13:29:98:0.133:2	./.	0/1:93,6:31:99:0.061:2	./.	0/1:52,12:31:64:0.188:2	./.	./.	0/1:121,22:32:143:0.154:2
chr21	10944711	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:30:198:0.025:2	./.	./.	0/1:188,6:33:194:0.031:2
chr21	10944712	rs143624380	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,33:32:193:0.171:2	./.	./.	./.	./.
chr21	10951387	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:33:188:0.021:2	./.	./.	./.
chr21	10951426	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,5:31:101:0.050:2	0/1:106,4:32:110:0.036:2	./.	./.
chr21	10952960	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:129,5:32:134:0.037:2	./.	./.	./.	0/1:187,5:30:192:0.026:2	./.	./.	./.	0/1:166,5:31:171:0.029:2	./.
chr21	10959771	rs111657679	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,33:30:188:0.176:2	./.	0/1:152,34:31:186:0.183:2	./.	./.	./.
chr21	10959806	rs212111	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,3:31:33:0.091:2	./.	./.	0/1:99,41:30:140:0.293:2	./.	./.	0/1:154,38:31:192:0.198:2	./.	0/1:158,34:29:192:0.177:2
chr21	10969079	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,6:27:177:0.034:2
chr21	10969096	.	C	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:107,5:33:112:0.045:2	0/1:165,5:33:170:0.029:2	./.	./.	0/1:109,5:34:114:0.044:2	0/1:128,4:34:132:0.030:2	0/1:146,9:33:155:0.058:2
chr21	10969118	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,5:32:145:0.034:2
chr21	10969121	rs191128347	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,43:33:155:0.277:2	./.	./.	./.	./.	./.	./.	./.
chr21	10970003	rs469719	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,11:29:33:0.333:2	./.	./.	0/1:161,35:29:196:0.179:2	./.	./.	0/1:152,32:30:184:0.174:2	./.	0/1:165,29:31:195:0.149:2
chr21	10970017	rs468525	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,6:33:27:0.222:2	./.	./.	0/1:154,32:31:187:0.172:2	./.	./.	0/1:153,33:33:186:0.177:2	./.	0/1:148,30:32:178:0.169:2
chr21	10973708	rs201967100	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,37:31:191:0.194:2	./.	./.	./.	0/1:115,58:33:173:0.335:2	./.
chr21	11049584	rs9808647	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:162,26:33:188:0.138:2	0/1:113,17:33:130:0.131:2	0/1:25,5:32:30:0.167:2	0/1:152,45:33:197:0.228:2	./.	0/1:174,20:32:194:0.103:2	0/1:164,33:33:197:0.168:2	0/1:175,20:33:195:0.103:2	0/1:162,31:33:193:0.161:2	0/1:172,15:33:187:0.080:2	0/1:172,17:33:189:0.090:2
chr21	11049592	rs3906134	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:161,28:32:190:0.148:2	0/1:115,17:33:132:0.129:2	0/1:26,5:31:31:0.161:2	0/1:150,46:31:196:0.235:2	./.	0/1:174,19:31:193:0.098:2	0/1:165,33:31:198:0.167:2	0/1:176,20:32:196:0.102:2	0/1:162,31:32:193:0.161:2	0/1:171,16:32:187:0.086:2	0/1:175,17:32:192:0.089:2
chr21	11049596	rs28571918	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:179,8:31:187:0.043:2	0/1:130,10:31:140:0.071:2	./.	0/1:190,5:30:195:0.026:2	0/1:177,8:31:185:0.043:2	0/1:172,21:31:193:0.109:2	0/1:192,6:27:198:0.030:2	0/1:188,7:30:195:0.036:2	./.	0/1:162,26:30:188:0.138:2	0/1:170,20:31:190:0.105:2
chr21	11049616	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,14:32:138:0.101:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	11049617	rs2740327	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:166,21:31:187:0.112:2	./.	0/1:166,22:28:188:0.117:2	0/1:180,10:30:190:0.053:2	./.	./.	0/1:156,27:30:183:0.148:2	0/1:185,8:30:193:0.041:2
chr21	11049621	rs28441174	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:175,7:31:182:0.038:2	0/1:124,10:32:134:0.075:2	./.	./.	0/1:176,9:31:185:0.049:2	0/1:164,17:31:181:0.094:2	./.	0/1:177,5:28:182:0.027:2	./.	0/1:158,15:30:173:0.087:2	0/1:161,16:32:177:0.090:2
chr21	11049623	rs28537865	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:174,7:30:181:0.039:2	0/1:122,10:33:132:0.076:2	./.	./.	0/1:174,9:33:183:0.049:2	0/1:162,17:32:179:0.095:2	./.	0/1:177,5:32:182:0.027:2	./.	0/1:155,16:30:171:0.094:2	0/1:163,16:33:179:0.089:2
chr21	11058226	rs4913558	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:130,31:33:162:0.193:2	0/1:65,21:32:86:0.244:2	0/1:14,9:33:23:0.391:2	0/1:114,70:33:184:0.380:2	0/1:93,42:33:135:0.311:2	0/1:121,58:33:179:0.324:2	0/1:117,68:33:185:0.368:2	0/1:142,46:33:188:0.245:2	0/1:153,21:33:175:0.121:2	0/1:123,51:33:174:0.293:2	0/1:104,67:33:171:0.392:2
chr21	11058227	rs2775343	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:86,66:31:152:0.434:2	0/1:55,27:32:82:0.329:2	0/1:17,6:31:23:0.261:2	0/1:143,44:31:187:0.235:2	0/1:80,46:31:127:0.365:2	0/1:131,52:31:183:0.284:2	0/1:146,41:31:187:0.219:2	0/1:99,82:31:181:0.453:2	0/1:107,62:31:169:0.367:2	0/1:92,76:31:168:0.452:2	0/1:117,49:31:167:0.295:2
chr21	11058229	rs55883018	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:89,65:32:154:0.422:2	0/1:54,26:32:80:0.325:2	0/1:17,6:32:23:0.261:2	0/1:141,44:32:185:0.238:2	0/1:87,46:32:133:0.346:2	0/1:130,52:31:182:0.286:2	0/1:146,41:31:187:0.219:2	0/1:121,58:31:180:0.324:2	0/1:105,62:31:167:0.371:2	0/1:94,75:31:169:0.444:2	0/1:118,49:32:167:0.293:2
chr21	11058230	rs372289393	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,11:32:195:0.056:2	./.	./.	./.	0/1:177,13:32:190:0.068:2	0/1:172,5:33:177:0.028:2
chr21	11058248	rs8130203	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:183,11:29:194:0.057:2	0/1:117,11:32:128:0.086:2	./.	0/1:193,6:32:199:0.030:2	./.	0/1:183,11:31:194:0.057:2	0/1:182,14:32:196:0.071:2	0/1:181,10:29:191:0.052:2	./.	./.	./.
chr21	11058322	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,8:31:142:0.056:2	./.	0/1:149,5:27:154:0.032:2	0/1:134,8:31:142:0.056:2	./.	./.	0/1:122,13:33:135:0.096:2	0/1:124,8:33:132:0.061:2
chr21	11098674	rs1752238	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:31:49:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,95:30:95:1.00:2	0/1:0,42:30:42:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,21:31:21:1.00:2
chr21	11098704	rs74415742	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,5:31:27:0.200:2	./.	./.	0/1:56,5:24:62:0.082:2	0/1:65,5:27:74:0.071:2	./.	0/1:46,4:28:52:0.080:2	0/1:69,7:29:79:0.092:2	./.	./.
chr21	11098709	rs79633368	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,21:29:75:0.280:2	./.	./.	./.	./.	./.
chr21	11098723	rs73151874	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,6:28:26:0.231:2	./.	./.	0/1:61,7:30:68:0.103:2	0/1:43,30:28:73:0.411:2	0/1:123,6:31:129:0.047:2	0/1:47,6:29:53:0.113:2	0/1:68,12:30:80:0.150:2	./.	./.
chr21	11098728	rs113315187	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:44,3:32:47:0.064:2	0/1:19,6:32:25:0.240:2	./.	./.	0/1:56,7:31:63:0.111:2	0/1:64,10:30:74:0.135:2	0/1:119,6:32:125:0.048:2	0/1:46,6:31:52:0.115:2	0/1:71,11:32:82:0.134:2	0/1:48,3:33:51:0.059:2	./.
chr21	14982577	rs373326718	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:93,72:26:167:0.436:2	0/1:78,97:26:175:0.554:2	./.	0/1:138,41:27:179:0.229:2	0/1:116,36:26:153:0.237:2	0/1:133,52:27:185:0.281:2	0/1:106,15:27:121:0.124:2	0/1:165,28:25:193:0.145:2	0/1:143,8:28:151:0.053:2	0/1:131,52:26:184:0.284:2	0/1:125,60:26:186:0.324:2
chr21	14982586	rs200720062	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:95,80:33:175:0.457:2	0/1:79,100:33:179:0.559:2	0/1:19,3:33:22:0.136:2	0/1:138,42:34:180:0.233:2	0/1:113,39:33:153:0.257:2	0/1:132,61:33:193:0.316:2	0/1:110,18:32:128:0.141:2	0/1:156,32:33:188:0.170:2	0/1:152,7:35:159:0.044:2	0/1:129,60:33:189:0.317:2	0/1:128,59:33:187:0.316:2
chr21	14982637	.	C	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:168,4:33:172:0.023:2	./.	./.	./.	./.	./.	0/1:102,6:28:108:0.056:2	./.	./.	0/1:148,11:29:159:0.069:2	0/1:164,8:31:172:0.047:2
chr21	14982676	.	A	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:165,11:31:176:0.063:2	0/1:153,6:30:159:0.038:2	0/1:15,3:28:18:0.167:2	0/1:137,27:30:164:0.165:2	0/1:132,14:30:147:0.096:2	./.	0/1:98,5:31:104:0.049:2	0/1:125,8:30:133:0.060:2	0/1:77,22:31:99:0.222:2	0/1:144,19:30:163:0.117:2	0/1:132,17:30:149:0.114:2
chr21	14982716	rs201206142	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,95:27:134:0.709:2	0/1:38,78:27:116:0.672:2	0/1:5,4:30:9:0.444:2	0/1:44,55:29:99:0.556:2	0/1:65,39:28:104:0.375:2	0/1:57,55:28:112:0.491:2	0/1:54,31:29:85:0.365:2	0/1:56,24:28:80:0.300:2	0/1:60,6:33:66:0.091:2	0/1:49,55:27:104:0.529:2	0/1:67,48:28:115:0.417:2
chr21	14982717	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,6:31:63:0.095:2	./.	./.
chr21	14982721	rs200814491	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,3:27:9:0.333:2	0/1:77,18:31:95:0.189:2	./.	./.	./.	./.	./.	./.	./.
chr21	14982746	rs369746921	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:40,69:29:109:0.633:2	0/1:34,44:30:79:0.564:2	./.	0/1:53,31:29:85:0.369:2	0/1:48,17:28:65:0.262:2	0/1:52,29:29:81:0.358:2	0/1:60,16:29:76:0.211:2	0/1:53,12:29:65:0.185:2	./.	0/1:52,18:30:70:0.257:2	0/1:51,28:29:79:0.354:2
chr21	14982786	rs376660614	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:59,19:32:78:0.244:2	0/1:27,14:32:41:0.341:2	./.	0/1:60,11:32:71:0.155:2	./.	0/1:51,7:30:58:0.121:2	0/1:64,4:33:68:0.059:2	./.	./.	0/1:55,4:31:59:0.068:2	0/1:51,11:30:62:0.177:2
chr21	14982810	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,9:32:66:0.136:2	0/1:32,4:33:36:0.111:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	14982827	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:57,5:32:62:0.081:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,5:31:85:0.059:2	./.
chr21	14982828	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,5:31:62:0.081:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	14982904	rs374506316	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:117,8:27:125:0.064:2	./.	./.	./.	./.	0/1:138,4:31:142:0.028:2	./.	./.	./.	./.	0/1:102,5:32:107:0.047:2
chr21	14983034	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,9:31:57:0.158:2	./.	./.	./.
chr21	14983055	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,11:33:56:0.196:2	./.	./.	./.
chr21	14987721	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:118,8:28:126:0.063:2	./.	./.	0/1:164,5:28:169:0.030:2	./.	./.	0/1:71,5:29:76:0.066:2	./.	./.	./.	./.
chr21	14987775	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,5:31:176:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	14987776	.	G	C,A	.	PASS	AC=1,1;AF=0.167,0.167;AN=6;SOMATIC;VT=SNP;set=variant2-variant6	GT:BQ:DP:FA:SS	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/2:33:192:0.021:2	./.	./.	./.	0/1:34:197:0.020:2	./.
chr21	14987780	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:145,4:33:149:0.027:2	./.	./.	./.	./.	./.	./.
chr21	14987785	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,7:32:188:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	14987805	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:149,8:30:157:0.051:2	./.	./.	./.	./.	./.	./.
chr21	14987811	rs199909497	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:132,56:31:188:0.298:2	0/1:133,58:31:191:0.304:2	./.	./.	0/1:105,44:30:149:0.295:2	0/1:120,54:30:174:0.310:2	0/1:110,49:30:159:0.308:2	./.	./.	0/1:137,59:30:197:0.301:2	./.
chr21	14987816	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:144,9:29:153:0.059:2	./.	./.	./.	./.	./.	./.
chr21	14987830	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:193,5:34:198:0.025:2	0/1:142,4:33:146:0.027:2	./.	./.	./.	0/1:195,5:32:200:0.025:2	./.	./.
chr21	14987834	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:180,8:31:188:0.043:2	0/1:179,8:32:187:0.043:2	./.	./.	./.	./.	./.	./.	./.	0/1:158,7:33:165:0.042:2	0/1:187,9:32:196:0.046:2
chr21	14987864	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,7:31:191:0.037:2	0/1:102,5:29:108:0.047:2	0/1:175,11:30:186:0.059:2	./.	0/1:173,5:30:178:0.028:2	./.	./.	./.
chr21	14987871	rs200402186	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:162,30:32:192:0.156:2	0/1:140,21:32:161:0.130:2	./.	./.	0/1:73,18:30:92:0.198:2	0/1:153,30:30:183:0.164:2	0/1:104,18:30:122:0.148:2	./.	./.	0/1:135,36:30:171:0.211:2	./.
chr21	14990675	.	C	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:180,15:34:195:0.077:2	0/1:168,18:32:186:0.097:2	./.	./.	./.	0/1:180,18:32:198:0.091:2	0/1:179,17:32:196:0.087:2	0/1:188,7:30:195:0.036:2
chr21	14990758	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,6:29:158:0.038:2	./.	./.	./.	./.	./.
chr21	14992518	rs202091441	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:193,4:36:197:0.020:2	./.	./.	./.	./.	./.	./.	0/1:166,11:32:177:0.062:2	./.	./.	./.
chr21	14992571	.	C	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:183,8:35:191:0.042:2	0/1:189,9:33:198:0.045:2	./.	0/1:191,8:34:199:0.040:2	0/1:192,6:30:198:0.030:2	./.	0/1:187,11:34:198:0.056:2	0/1:173,22:33:195:0.113:2	./.	0/1:188,9:34:198:0.046:2	0/1:185,11:34:196:0.056:2
chr21	15002158	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,18:33:188:0.096:2	./.	./.	./.
chr21	15002161	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:33:190:0.021:2	./.
chr21	15011839	rs182477426	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:31:88:0.045:2	./.	./.	./.	./.	0/1:116,5:29:121:0.041:2
chr21	15011856	rs200053244	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,5:32:81:0.062:2	./.	0/1:113,7:32:120:0.058:2	0/1:94,4:33:98:0.041:2	0/1:20,4:34:25:0.167:2	./.	./.	0/1:144,7:30:151:0.046:2
chr21	15013714	rs202212566	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:187,5:32:192:0.026:2	0/1:107,6:31:113:0.053:2	./.	./.	0/1:132,9:32:141:0.064:2	0/1:173,5:33:178:0.028:2	./.	./.	0/1:26,3:30:29:0.103:2	./.	0/1:180,7:30:187:0.037:2
chr21	15013721	rs200270105	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,6:26:121:0.050:2	./.	./.	0/1:128,6:26:135:0.045:2	./.	./.	./.	./.	./.	./.
chr21	15013736	.	T	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:191,4:32:195:0.021:2	0/1:127,5:30:132:0.038:2	./.	./.	0/1:126,6:31:132:0.045:2	./.	./.	./.	0/1:8,3:31:11:0.273:2	./.	0/1:190,4:33:194:0.021:2
chr21	15013815	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:128,7:31:135:0.052:2	0/1:113,6:32:119:0.050:2	./.	0/1:132,6:30:138:0.043:2	./.	./.	./.	0/1:69,10:29:79:0.127:2	0/1:71,9:30:80:0.113:2	0/1:144,8:31:152:0.053:2	0/1:174,11:31:185:0.059:2
chr21	15481365	rs7278737	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,38:33:78:0.487:2	0/1:18,21:32:39:0.538:2	0/1:0,7:31:7:1.00:2	0/1:0,94:32:94:1.00:2	0/1:1,44:31:45:0.978:2	./.	0/1:1,53:31:54:0.981:2	0/1:67,39:31:106:0.368:2	0/1:57,39:32:96:0.406:2	0/1:43,29:32:72:0.403:2	0/1:54,40:31:94:0.426:2
chr21	15516948	rs2822432	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,8:31:13:0.615:2	0/1:58,42:31:101:0.420:2	0/1:35,24:32:59:0.407:2	0/1:44,37:32:81:0.457:2	0/1:21,16:32:37:0.432:2	0/1:53,25:32:78:0.321:2	0/1:1,73:32:74:0.986:2	./.	./.
chr21	15516976	rs7283442	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,97:32:97:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,94:31:94:1.00:2	0/1:0,61:30:61:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,86:31:86:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,70:31:70:1.00:2	0/1:0,155:31:156:1.00:2
chr21	15558346	rs397517	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:9,19:32:28:0.679:2	0/1:15,8:31:23:0.348:2	./.	0/1:23,9:31:32:0.281:2	./.	./.	0/1:12,5:32:17:0.294:2	0/1:18,17:31:35:0.486:2	./.	0/1:12,14:32:26:0.538:2	./.
chr21	15593495	rs378280	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,6:35:6:1.00:2	./.	0/1:2,3:33:5:0.600:2
chr21	15596772	rs409782	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,97:32:97:1.00:2	0/1:2,67:32:69:0.971:2	0/1:0,13:31:13:1.00:2	0/1:1,107:32:108:0.991:2	0/1:36,46:31:82:0.561:2	0/1:0,129:31:129:1.00:2	0/1:33,45:31:78:0.577:2	0/1:86,58:31:144:0.403:2	0/1:0,108:33:108:1.00:2	0/1:0,91:32:91:1.00:2	0/1:2,191:32:193:0.990:2
chr21	15599340	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:183,5:31:188:0.027:2	./.	./.	0/1:189,8:27:197:0.041:2	./.	./.	./.	./.	./.	./.	0/1:189,5:30:194:0.026:2
chr21	15599354	rs139439630	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,81:30:186:0.435:2	./.	./.
chr21	15599466	rs7280643	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:76,71:31:147:0.483:2	0/1:57,43:30:100:0.430:2	./.	0/1:99,60:30:159:0.377:2	./.	./.	0/1:81,51:30:132:0.386:2	./.	./.	0/1:84,43:31:127:0.339:2	0/1:94,77:30:171:0.450:2
chr21	15599480	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,6:31:184:0.033:2	./.	./.
chr21	15873026	rs62227165	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,68:33:153:0.444:2	./.	./.	./.
chr21	15918577	rs7281104	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,14:33:14:1.00:2	0/1:1,95:33:96:0.990:2	./.	./.	./.	./.	0/1:66,47:34:113:0.416:2	./.	0/1:0,146:33:146:1.00:2
chr21	15954528	rs2822785	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,28:31:69:0.406:2	0/1:21,24:32:45:0.533:2	0/1:2,4:31:6:0.667:2	0/1:55,42:30:97:0.433:2	0/1:50,30:30:80:0.375:2	./.	./.	0/1:2,74:31:76:0.974:2	0/1:0,93:32:93:1.00:2	0/1:35,28:32:65:0.444:2	./.
chr21	15954593	rs2822786	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:36,34:32:70:0.486:2	0/1:26,14:32:40:0.350:2	./.	./.	0/1:27,33:31:60:0.550:2	0/1:43,28:32:71:0.394:2	0/1:25,27:31:52:0.519:2	./.	./.	0/1:32,30:32:62:0.484:2	0/1:1,94:32:95:0.989:2
chr21	15954660	rs2822787	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,120:33:120:1.00:2	0/1:0,75:32:75:1.00:2	0/1:18,5:32:23:0.217:2	0/1:1,162:33:163:0.994:2	0/1:0,91:32:91:1.00:2	0/1:63,58:32:121:0.479:2	0/1:1,106:32:107:0.991:2	0/1:2,171:33:173:0.988:2	0/1:1,161:33:163:0.994:2	./.	0/1:2,155:33:157:0.987:2
chr21	15964920	rs466913	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,21:33:21:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,2:34:2:1.00:2	0/1:0,15:33:15:1.00:2	0/1:2,15:33:17:0.882:2	0/1:12,8:32:20:0.400:2	0/1:0,9:34:9:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,22:34:22:1.00:2	0/1:0,28:34:28:1.00:2	0/1:25,16:32:41:0.390:2
chr21	15974409	rs456067	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:33:55:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,93:34:93:1.00:2	0/1:0,73:33:73:1.00:2	0/1:0,89:33:89:1.00:2
chr21	15984982	rs2822809	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:35,18:33:53:0.340:2	0/1:18,7:32:25:0.280:2	0/1:0,2:31:2:1.00:2	./.	0/1:1,43:32:44:0.977:2	0/1:0,53:32:53:1.00:2	0/1:34,16:31:50:0.320:2	./.	0/1:31,23:34:54:0.426:2	0/1:34,26:33:60:0.433:2	0/1:50,37:33:87:0.425:2
chr21	16337084	rs61733441	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,8:33:10:0.800:2	./.	./.	./.	./.	./.	./.	./.	./.
chr21	16339149	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:33:155:0.026:2	./.	./.
chr21	16339172	rs2229742	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,91:30:179:0.508:2	./.	./.	./.	./.	./.	./.	./.
chr21	16339193	rs150468995	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,75:31:181:0.414:2	./.	./.
chr21	16340289	rs2229741	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,9:28:13:0.692:2	0/1:42,48:32:90:0.533:2	./.	0/1:1,88:31:89:0.989:2	0/1:42,40:31:82:0.488:2	0/1:57,74:31:131:0.565:2	./.	0/1:39,46:32:85:0.541:2	0/1:68,59:31:127:0.465:2
chr21	16340764	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:33:167:0.024:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	17203785	rs2297248	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,18:33:19:0.947:2	./.	./.	./.	0/1:82,60:32:142:0.423:2	./.	./.	./.	./.
chr21	17205762	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.
chr21	17443633	rs117994222	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,42:30:82:0.512:2	./.	./.	./.	./.	./.	./.
chr21	17566807	rs62219500	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,11:32:18:0.611:2	./.	./.	./.	./.	./.	./.	0/1:17,16:32:33:0.485:2
chr21	18924163	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:31:73:0.055:2	./.	./.	./.	./.	./.
chr21	18924189	rs61750981	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,39:33:77:0.506:2	./.	./.	./.	./.	./.
chr21	18933054	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,6:33:87:0.069:2	./.	./.	./.	./.	./.	./.
chr21	18933097	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,4:29:104:0.038:2	./.	./.	./.	./.	./.	./.
chr21	18933127	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,4:32:86:0.047:2	./.	./.	./.	./.	0/1:118,4:30:122:0.033:2	0/1:124,4:32:128:0.031:2
chr21	18933713	rs148881358	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,5:31:195:0.026:2	0/1:122,7:31:129:0.054:2	0/1:190,6:31:196:0.031:2	0/1:168,6:32:174:0.034:2	0/1:195,4:32:199:0.020:2	./.	0/1:165,7:32:172:0.041:2	0/1:185,5:33:190:0.026:2
chr21	18937758	rs437470	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,52:26:130:0.400:2	./.	0/1:84,48:28:132:0.364:2	./.	./.	./.
chr21	18977287	rs376786678	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,19:31:46:0.413:2	0/1:12,9:31:21:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	19169155	rs1047978	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:25,23:34:48:0.479:2	0/1:6,9:33:15:0.600:2	./.	0/1:15,17:30:32:0.531:2	./.	0/1:19,19:32:38:0.500:2	0/1:6,9:33:15:0.600:2	0/1:12,12:32:24:0.500:2	./.	0/1:16,12:32:28:0.429:2	0/1:29,25:33:54:0.463:2
chr21	19169218	rs2824495	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,13:31:25:0.520:2	0/1:18,15:32:33:0.455:2	./.	./.	./.	./.	./.
chr21	19628835	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,20:14:139:0.145:2
chr21	19642285	rs7276699	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,5:33:37:0.135:2	0/1:50,30:32:80:0.375:2
chr21	19651307	rs73320125	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,4:33:24:0.167:2	./.	./.
chr21	19651341	rs138070518	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,7:33:32:0.219:2	./.	./.
chr21	19651357	rs17698445	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,28:34:65:0.431:2
chr21	19666901	rs1540000	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,94:33:94:1.00:2	0/1:0,57:32:57:1.00:2	0/1:9,4:32:13:0.308:2	./.	./.	0/1:80,43:31:123:0.350:2	./.	0/1:58,43:32:101:0.426:2	./.	0/1:48,40:32:88:0.455:2	./.
chr21	19666910	rs2824718	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,114:33:115:0.991:2	0/1:54,24:32:78:0.308:2	./.	0/1:0,81:32:81:1.00:2	0/1:47,60:32:107:0.561:2	0/1:84,85:33:169:0.503:2	./.	0/1:2,176:33:178:0.989:2
chr21	19670118	rs2824721	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,52:32:52:1.00:2	0/1:0,24:32:24:1.00:2	./.	0/1:0,48:32:48:1.00:2	0/1:23,9:32:32:0.281:2	0/1:1,41:32:42:0.976:2	0/1:34,20:31:54:0.370:2	0/1:0,45:31:45:1.00:2	0/1:44,32:33:76:0.421:2	0/1:15,22:32:37:0.595:2	0/1:0,69:32:69:1.00:2
chr21	19713821	rs2824751	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,29:33:73:0.397:2	0/1:28,13:32:41:0.317:2	./.	./.	./.	0/1:44,37:31:81:0.457:2	0/1:31,22:32:53:0.415:2	./.	./.	0/1:33,29:33:62:0.468:2	0/1:47,51:32:98:0.520:2
chr21	19715918	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:31:179:0.022:2	./.	./.	./.	./.	./.
chr21	19752896	rs41421549	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr21	19756040	rs2824790	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:32:10:0.400:2	./.	0/1:26,33:33:59:0.559:2	./.	0/1:40,33:33:74:0.452:2	0/1:52,40:33:92:0.435:2	./.	0/1:45,37:33:82:0.451:2	0/1:0,135:33:135:1.00:2
chr21	19770562	rs2824804	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,18:33:19:0.947:2	./.	0/1:28,12:32:40:0.300:2	./.	./.	./.	./.	./.
chr21	19770577	rs149508033	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,6:32:20:0.300:2	./.	./.	./.	./.	./.	./.
chr21	22656636	rs199788139	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,54:32:92:0.587:2	./.	./.	./.
chr21	22746187	rs232518	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,17:30:43:0.395:2	0/1:0,22:30:22:1.00:2	./.	0/1:8,19:30:27:0.704:2	./.	0/1:30,17:32:47:0.362:2	./.	0/1:26,16:32:42:0.381:2
chr21	26946356	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:32:80:0.050:2
chr21	26965148	rs1135638	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,68:31:68:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,47:32:47:1.00:2	0/1:27,30:30:57:0.526:2	0/1:0,42:31:42:1.00:2
chr21	26965205	rs1057885	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:32:66:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,62:32:62:1.00:2	0/1:1,42:32:43:0.977:2	0/1:0,59:32:59:1.00:2	0/1:0,63:33:63:1.00:2	0/1:29,33:33:62:0.532:2	0/1:0,62:31:62:1.00:2
chr21	26969703	rs1135618	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:33:71:1.00:2	0/1:1,44:33:45:0.978:2	0/1:0,9:32:9:1.00:2	0/1:0,60:33:60:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,68:34:68:1.00:2	0/1:25,26:31:51:0.510:2	0/1:1,84:33:85:0.988:2
chr21	26978950	rs3989369	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:33:46:1.00:2	0/1:1,40:32:41:0.976:2	0/1:0,5:33:5:1.00:2	0/1:0,45:33:45:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,29:33:29:1.00:2	0/1:1,47:32:48:0.979:2	0/1:0,51:33:51:1.00:2	0/1:1,47:31:48:0.979:2	0/1:0,58:32:58:1.00:2
chr21	27056250	rs8133602	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,50:32:50:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr21	27121388	rs9981487	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,43:29:84:0.512:2	./.	./.	./.	./.	./.	./.
chr21	27121427	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,6:31:60:0.100:2	./.	./.	./.	./.	./.	./.
chr21	27124484	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,4:32:31:0.129:2	./.	./.	./.	./.	./.	./.	./.	./.
chr21	27130474	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,4:33:49:0.082:2	./.	./.	./.	./.	./.	./.	0/1:68,3:34:71:0.042:2
chr21	27141398	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:191,4:33:195:0.021:2	0/1:168,7:32:175:0.040:2	./.	./.	./.	./.	./.	./.
chr21	27141414	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,89:33:178:0.500:2	./.	./.	./.	./.	./.
chr21	27284197	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,6:33:194:0.031:2	./.	./.	./.
chr21	27347496	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,62:32:142:0.437:2	./.
chr21	27347536	rs148180403	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,54:31:123:0.439:2	./.	./.	./.	./.	./.	./.	./.
chr21	27369683	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,3:34:75:0.040:2	./.	./.	./.	./.	./.
chr21	27423376	rs149995579	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:34:152:0.026:2	./.	./.	./.	./.	./.
chr21	27425636	rs148699407	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:35:104:0.038:2	./.	./.
chr21	27852724	rs966410	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:13,9:33:22:0.409:2	0/1:5,7:32:12:0.583:2	./.	./.	0/1:7,6:32:13:0.462:2	./.	0/1:7,9:31:16:0.563:2	0/1:11,11:32:22:0.500:2	0/1:18,12:33:30:0.400:2	0/1:0,25:33:25:1.00:2	0/1:2,26:32:28:0.929:2
chr21	28210030	rs3183693	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,70:30:165:0.424:2
chr21	28210046	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:32:131:0.031:2	./.	./.	./.	./.	./.
chr21	28210854	rs56251528	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:35,32:32:67:0.478:2	0/1:21,17:32:38:0.447:2	0/1:2,3:32:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr21	28212281	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:32:131:0.031:2	./.	./.
chr21	28212720	rs201731104	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,22:30:46:0.478:2	0/1:10,10:29:20:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	28212760	rs436525	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,31:32:72:0.431:2	0/1:0,98:32:98:1.00:2	0/1:0,82:32:82:1.00:2	0/1:45,42:33:87:0.483:2	0/1:53,34:32:87:0.391:2	0/1:35,31:33:66:0.470:2	0/1:0,57:33:57:1.00:2	0/1:0,60:33:60:1.00:2
chr21	28216595	rs428785	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,4:31:8:0.500:2	0/1:30,27:32:57:0.474:2	0/1:0,74:31:74:1.00:2	0/1:0,60:31:60:1.00:2	0/1:32,40:32:72:0.556:2	0/1:39,36:33:75:0.480:2	0/1:1,46:32:47:0.979:2	0/1:0,50:32:50:1.00:2	0/1:0,26:32:26:1.00:2
chr21	28216674	rs409630	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:23:6:0.500:2	./.	0/1:3,6:32:9:0.667:2	./.	./.
chr21	28216692	rs445784	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,9:28:9:1.00:2	0/1:0,7:25:7:1.00:2	0/1:2,3:26:5:0.600:2	./.	0/1:0,5:30:5:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,4:30:4:1.00:2
chr21	28217178	rs434857	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	0/1:0,5:27:5:1.00:2	./.	./.	./.	./.	./.	./.
chr21	28296813	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,29:32:184:0.158:2
chr21	28302355	rs226794	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,62:31:62:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,8:31:8:1.00:2	0/1:45,35:31:80:0.438:2	0/1:0,60:29:60:1.00:2	0/1:0,76:30:76:1.00:2	0/1:70,38:30:108:0.352:2	0/1:0,88:30:88:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,45:31:45:1.00:2	0/1:1,60:30:61:0.984:2
chr21	28305202	rs61750214	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:34:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.
chr21	28305212	rs2830585	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,60:30:115:0.522:2	./.	./.	./.	0/1:63,71:30:134:0.530:2	./.	./.	./.
chr21	28315841	rs61088614	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,36:32:64:0.563:2	0/1:18,17:32:35:0.486:2	./.	./.	./.	0/1:32,30:30:62:0.484:2	./.	./.	./.	./.	./.
chr21	28338298	rs457947	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:18,27:32:45:0.600:2	0/1:19,11:31:30:0.367:2	0/1:0,5:31:5:1.00:2	./.	./.	0/1:11,27:32:38:0.711:2	./.	./.	0/1:24,17:33:41:0.415:2	./.	./.
chr21	28338423	rs55933916	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,23:32:62:0.371:2	./.	./.	0/1:23,13:33:36:0.361:2
chr21	30250555	rs2205446	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:34:44:1.00:2	0/1:0,8:33:8:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,39:34:39:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,33:33:33:1.00:2
chr21	30250573	rs61735764	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,25:32:51:0.490:2	./.	./.
chr21	30250615	rs2205447	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:32:54:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,36:32:36:1.00:2
chr21	30255347	rs61735765	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,72:30:138:0.522:2	0/1:77,51:32:128:0.398:2	./.	./.	./.	0/1:87,84:31:171:0.491:2
chr21	30257560	rs1997606	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:30:53:1.00:2	0/1:0,28:28:28:1.00:2	0/1:3,5:30:8:0.625:2	0/1:0,66:29:66:1.00:2	0/1:0,63:28:63:1.00:2	0/1:0,88:29:88:1.00:2	0/1:0,62:29:62:1.00:2	0/1:58,46:28:104:0.442:2	0/1:0,52:30:52:1.00:2	0/1:0,59:29:59:1.00:2	0/1:0,30:29:30:1.00:2
chr21	30257568	rs1997607	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:29:49:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,82:31:82:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,101:31:101:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,26:29:26:1.00:2
chr21	30313618	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:33:69:0.058:2	./.	./.
chr21	30318207	rs2250574	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:82,4:30:86:0.047:2	./.	./.	./.	0/1:42,35:32:77:0.455:2	./.	./.	0/1:35,49:32:84:0.583:2	0/1:53,51:33:104:0.490:2	0/1:47,33:33:80:0.413:2	./.
chr21	30331935	rs57646126	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,4:31:71:0.056:2	./.	./.	./.	./.	./.	./.
chr21	30332911	rs34635840	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:52,32:32:84:0.381:2	0/1:23,18:32:41:0.439:2	./.	./.	0/1:40,51:31:91:0.560:2	./.	0/1:48,43:31:91:0.473:2	./.	./.	./.	./.
chr21	30339120	rs34191159	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,6:31:27:0.222:2	./.	0/1:15,8:32:23:0.348:2	./.	./.	./.
chr21	30339234	rs61735768	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:31:5:1.00:2	./.	./.	./.	./.	0/1:28,18:32:46:0.391:2	./.	./.	./.
chr21	30341891	rs2254796	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,47:33:47:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,8:33:8:1.00:2	./.	0/1:25,14:33:39:0.359:2	0/1:0,36:32:36:1.00:2	0/1:1,33:32:34:0.971:2	0/1:0,34:33:34:1.00:2	0/1:36,33:34:69:0.478:2	0/1:33,24:33:57:0.421:2	0/1:54,42:33:96:0.438:2
chr21	30342955	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:31:86:0.047:2	./.	./.	./.	./.	./.
chr21	30357163	rs2245431	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,15:32:57:0.263:2	0/1:40,25:32:65:0.385:2	0/1:33,27:33:60:0.450:2	0/1:39,53:32:93:0.576:2
chr21	30365133	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,3:34:35:0.086:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	30365216	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:30:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr21	30407208	rs61735763	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,54:31:114:0.474:2	./.	./.	./.	./.	./.
chr21	30408670	rs2274802	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,86:32:87:0.989:2	0/1:0,36:32:36:1.00:2	./.	./.	0/1:29,25:31:54:0.463:2	0/1:43,44:31:87:0.506:2	0/1:2,53:32:55:0.964:2	./.	./.	./.	./.
chr21	30433870	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,4:33:50:0.080:2	./.	./.	./.	./.
chr21	30435744	rs201375014	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,6:32:83:0.072:2	./.	./.	./.	./.	./.
chr21	30439335	rs139906177	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,51:32:121:0.421:2	./.
chr21	30441765	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:30:101:0.040:2	./.	./.	./.
chr21	30441774	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:31:102:0.039:2	./.	./.	./.
chr21	30441816	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:32:72:0.056:2	./.	./.	./.
chr21	30442648	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:32:35:0.114:2
chr21	30547132	rs143395819	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:63,53:30:116:0.457:2	./.	./.	./.	./.	./.	./.
chr21	30714776	rs388707	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,34:30:67:0.507:2	0/1:26,18:31:44:0.409:2	./.	0/1:57,45:30:102:0.441:2	0/1:43,32:29:75:0.427:2	0/1:41,50:31:91:0.549:2	0/1:0,69:30:69:1.00:2	./.	./.	0/1:1,80:31:81:0.988:2	0/1:0,103:30:103:1.00:2
chr21	30949470	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:35:135:0.030:2	./.	./.
chr21	30969901	rs363431	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,39:31:78:0.500:2	0/1:44,36:31:80:0.450:2	0/1:43,31:31:74:0.419:2	./.	./.	0/1:0,53:30:53:1.00:2	0/1:35,34:31:70:0.493:2
chr21	30969925	.	A	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:46,10:19:56:0.179:2	./.	./.	0/1:43,17:24:60:0.283:2	0/1:44,16:18:60:0.267:2	0/1:44,19:23:63:0.302:2	0/1:36,12:17:48:0.250:2	0/1:58,17:20:75:0.227:2	0/1:62,19:14:81:0.235:2	0/1:41,11:19:52:0.212:2	0/1:44,12:23:56:0.214:2
chr21	30970005	rs363465	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,16:33:64:0.250:2	./.	./.	./.	./.
chr21	30971183	rs363430	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,7:31:25:0.280:2	./.	./.	./.	./.	0/1:22,21:30:43:0.488:2	0/1:26,19:32:45:0.422:2
chr21	31062070	rs363538	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,100:30:192:0.524:2	./.
chr21	31538692	rs35531957	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:9,9:31:18:0.500:2	0/1:9,11:31:20:0.550:2	0/1:0,2:31:2:1.00:2	./.	./.	0/1:28,16:31:44:0.364:2	./.	./.	./.	./.	0/1:20,16:31:36:0.444:2
chr21	31587793	rs686364	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,13:32:13:1.00:2	0/1:37,42:32:79:0.532:2	0/1:104,6:33:110:0.055:2	0/1:43,57:33:100:0.570:2	0/1:60,48:33:108:0.444:2	0/1:0,123:32:123:1.00:2	./.	0/1:46,32:33:78:0.410:2	0/1:56,47:32:103:0.456:2
chr21	31587839	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,5:27:96:0.052:2	./.	./.	./.	./.	./.
chr21	31587859	rs685967	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,25:29:65:0.385:2	./.	0/1:42,36:26:78:0.462:2	./.	./.	./.	./.	./.
chr21	31654752	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:102,4:32:106:0.038:2	./.	./.	./.	./.	./.	./.
chr21	31654809	rs77638540	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,53:32:117:0.453:2	./.	./.	./.	./.	./.
chr21	31655212	rs1557291	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,84:32:84:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,128:33:128:1.00:2	0/1:0,124:32:124:1.00:2	0/1:0,131:32:131:1.00:2	0/1:0,158:32:159:1.00:2	0/1:0,147:32:147:1.00:2	0/1:0,133:33:133:1.00:2	0/1:0,92:33:92:1.00:2	0/1:1,111:32:112:0.991:2
chr21	31661653	rs2832759	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:34:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr21	31661691	rs8127420	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,52:32:96:0.542:2	0/1:36,26:32:62:0.419:2	./.	0/1:53,49:32:102:0.480:2	./.	./.	0/1:52,44:33:96:0.458:2	./.
chr21	31691792	rs12483584	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,30:31:70:0.429:2	./.	./.	./.	./.
chr21	31692277	rs3804007	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,67:30:123:0.545:2	0/1:75,49:30:124:0.395:2	./.	./.	./.	./.
chr21	31692339	rs139433635	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,40:31:103:0.388:2	./.	./.	./.	./.	./.	./.	./.
chr21	31692377	rs3804008	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,7:32:15:0.467:2	./.	./.	0/1:100,72:33:173:0.419:2	0/1:100,68:33:168:0.405:2	./.	./.	./.	./.
chr21	31692541	rs78731676	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,60:31:115:0.522:2	0/1:42,38:31:80:0.475:2	./.	./.	./.	./.
chr21	31692626	rs113963766	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,7:32:19:0.368:2	./.	./.	./.	./.
chr21	31709691	rs2244485	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,146:32:148:0.993:2	0/1:2,76:31:78:0.974:2	./.	0/1:1,156:31:157:0.994:2	./.	0/1:82,63:31:145:0.434:2	./.	./.	0/1:0,138:32:138:1.00:2	0/1:81,44:30:125:0.352:2	0/1:68,77:32:145:0.531:2
chr21	31709703	rs117534873	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,48:31:128:0.375:2	./.	./.	./.	./.
chr21	31709861	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:32:84:0.048:2	./.	./.	./.
chr21	31744127	rs877346	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:1,61:31:62:0.984:2	0/1:0,45:32:45:1.00:2	./.	0/1:3,62:32:65:0.954:2	./.	0/1:31,34:31:65:0.523:2	./.	./.	0/1:0,57:32:57:1.00:2	0/1:32,32:31:64:0.500:2	0/1:45,28:31:73:0.384:2
chr21	31744163	rs2009546	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,26:32:69:0.377:2	./.	./.	./.	./.	./.
chr21	31744310	rs3804010	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:32:8:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr21	31744356	rs374607546	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,3:33:57:0.053:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	31744555	rs8129087	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,34:32:72:0.472:2	./.	./.	./.	./.
chr21	31768539	rs9636833	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,32:32:85:0.376:2	./.	./.	./.	./.	./.	./.	0/1:59,39:33:98:0.398:2
chr21	31802768	rs2226548	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,44:31:44:1.00:2	0/1:0,34:30:34:1.00:2	0/1:2,4:31:6:0.667:2	./.	0/1:0,38:30:38:1.00:2	0/1:1,33:29:34:0.971:2	0/1:1,46:31:47:0.979:2	0/1:24,34:31:58:0.586:2	0/1:2,38:30:40:0.950:2	0/1:25,15:31:40:0.375:2	0/1:29,29:30:58:0.500:2
chr21	31803054	rs999597	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,21:31:50:0.420:2	0/1:17,15:32:32:0.469:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	31803159	rs1539783	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,47:32:48:1.00:2	0/1:0,24:32:24:1.00:2	./.	./.	0/1:0,31:31:31:1.00:2	0/1:1,24:32:25:0.960:2	0/1:0,27:33:27:1.00:2	0/1:47,16:33:63:0.254:2	0/1:1,50:33:51:0.980:2	0/1:24,12:32:36:0.333:2	0/1:30,38:33:68:0.559:2
chr21	31803210	rs1539784	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,67:32:67:1.00:2	0/1:0,35:31:35:1.00:2	./.	./.	0/1:0,37:30:37:1.00:2	0/1:0,42:30:42:1.00:2	0/1:0,39:31:39:1.00:2	0/1:64,19:32:83:0.229:2	0/1:1,75:32:76:0.987:2	0/1:32,29:33:61:0.475:2	0/1:41,58:32:99:0.586:2
chr21	31812772	rs2832873	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,35:32:36:0.972:2	0/1:0,31:32:31:1.00:2	0/1:3,7:29:10:0.700:2	./.	0/1:1,23:30:24:0.958:2	0/1:0,36:31:36:1.00:2	0/1:1,38:31:39:0.974:2	0/1:31,25:31:56:0.446:2	0/1:0,46:32:46:1.00:2	0/1:19,15:31:34:0.441:2	0/1:19,23:31:42:0.548:2
chr21	31812828	rs35857034	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,19:32:52:0.365:2	0/1:29,38:31:67:0.567:2
chr21	31859558	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:36:73:0.055:2	./.
chr21	31859677	rs6516970	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,57:30:60:0.966:2	0/1:0,29:30:30:1.00:2	0/1:5,5:29:10:0.500:2	./.	0/1:1,99:29:101:0.990:2	0/1:0,65:28:66:1.00:2	0/1:2,97:29:100:0.980:2	0/1:31,51:29:82:0.622:2	0/1:1,85:29:86:0.988:2	0/1:33,44:29:78:0.571:2	0/1:31,31:29:63:0.500:2
chr21	31869286	rs2298437	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,52:33:53:0.981:2	0/1:0,29:32:29:1.00:2	0/1:4,3:34:7:0.429:2	./.	0/1:1,68:32:69:0.986:2	0/1:0,49:33:49:1.00:2	0/1:0,40:32:40:1.00:2	0/1:32,23:33:55:0.418:2	0/1:0,59:33:59:1.00:2	0/1:29,21:32:50:0.420:2	0/1:29,20:32:49:0.408:2
chr21	31874240	rs117415039	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,28:31:62:0.452:2	./.	./.	./.	0/1:27,30:32:57:0.526:2	./.	./.	./.
chr21	31874241	rs150340950	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,28:28:62:0.452:2	./.	./.	./.	0/1:27,30:32:57:0.526:2	./.	./.	./.
chr21	31914000	rs1023364	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,32:32:33:1.00:2	0/1:0,20:30:20:1.00:2	./.	0/1:1,42:30:43:0.977:2	0/1:0,15:29:15:1.00:2	0/1:0,37:29:38:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,28:29:28:1.00:2	0/1:0,43:30:43:1.00:2	0/1:25,14:31:40:0.359:2	0/1:0,38:30:39:1.00:2
chr21	31964916	rs9305426	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,97:32:100:0.970:2	0/1:0,60:32:60:1.00:2	0/1:11,8:32:19:0.421:2	0/1:67,64:32:131:0.489:2	0/1:2,123:31:125:0.984:2	0/1:2,133:31:135:0.985:2	0/1:3,130:32:133:0.977:2	0/1:5,129:32:134:0.963:2	0/1:0,135:33:136:1.00:2	0/1:62,65:32:127:0.512:2	0/1:62,46:32:108:0.426:2
chr21	31964928	rs13433449	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,4:32:161:0.025:2	./.	./.	./.
chr21	31964967	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:33:189:0.021:2	./.	./.	./.
chr21	31973516	rs198915	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,166:32:168:0.988:2	0/1:0,113:32:113:1.00:2	0/1:0,25:31:25:1.00:2	0/1:106,94:31:200:0.470:2	0/1:5,189:31:194:0.974:2	0/1:1,187:31:189:0.995:2	0/1:1,184:32:185:0.995:2	0/1:1,186:32:187:0.995:2	0/1:3,186:32:189:0.984:2	0/1:0,189:31:189:1.00:2	0/1:108,84:32:192:0.438:2
chr21	31973525	rs724849	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,92:31:192:0.479:2	./.	./.	./.	./.	./.
chr21	31973685	rs1961491	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,63:32:64:0.984:2	0/1:0,45:31:45:1.00:2	0/1:0,5:32:5:1.00:2	0/1:36,31:31:67:0.463:2	0/1:1,49:32:50:0.980:2	0/1:0,57:31:57:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,67:32:67:1.00:2	0/1:15,28:32:43:0.651:2	0/1:71,46:31:117:0.393:2
chr21	31988796	rs116971075	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:132,65:31:197:0.330:2	0/1:119,78:31:197:0.396:2	./.	0/1:113,86:32:199:0.432:2	0/1:118,77:32:195:0.395:2	./.	./.
chr21	31993073	rs146751633	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:96,10:24:106:0.094:2	./.	./.	0/1:101,13:17:114:0.114:2	0/1:116,15:17:131:0.115:2	0/1:86,15:21:101:0.149:2	0/1:116,18:15:136:0.134:2	./.	./.	0/1:91,7:20:98:0.071:2	0/1:93,11:23:104:0.106:2
chr21	32090908	rs2833031	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,53:30:141:0.379:2
chr21	32119495	rs12053674	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,31:33:61:0.508:2
chr21	32127524	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,3:32:37:0.081:2	./.	./.	./.
chr21	32201822	rs9982910	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,37:32:38:0.974:2	0/1:0,34:32:34:1.00:2	./.	0/1:39,33:32:72:0.458:2	0/1:47,28:31:75:0.373:2	0/1:0,64:32:64:1.00:2	0/1:58,29:32:87:0.333:2	0/1:55,24:32:79:0.304:2	0/1:0,44:32:45:1.00:2	./.	0/1:50,29:32:79:0.367:2
chr21	32201835	rs9982675	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,43:31:44:0.977:2	0/1:0,40:32:40:1.00:2	./.	0/1:44,41:32:85:0.482:2	0/1:47,23:32:70:0.329:2	0/1:0,67:32:67:1.00:2	0/1:70,29:32:99:0.293:2	0/1:59,32:32:91:0.352:2	0/1:0,52:33:52:1.00:2	./.	0/1:54,30:33:84:0.357:2
chr21	32201866	rs9982755	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,53:32:54:0.981:2	0/1:0,49:30:49:1.00:2	0/1:7,5:31:12:0.417:2	0/1:0,103:32:103:1.00:2	0/1:49,31:31:80:0.388:2	0/1:0,83:31:83:1.00:2	0/1:96,31:31:127:0.244:2	0/1:65,41:30:106:0.387:2	0/1:0,66:32:66:1.00:2	./.	0/1:53,43:31:96:0.448:2
chr21	32201951	rs9982775	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,92:28:94:0.979:2	0/1:0,53:28:53:1.00:2	0/1:6,7:30:13:0.538:2	0/1:0,78:30:78:1.00:2	0/1:34,38:29:72:0.528:2	0/1:1,78:29:79:0.987:2	0/1:62,35:30:97:0.361:2	0/1:55,43:29:98:0.439:2	0/1:1,95:29:96:0.990:2	./.	0/1:62,48:29:110:0.436:2
chr21	32253513	rs9636845	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,18:30:40:0.450:2	./.	./.	./.	./.	0/1:17,23:33:40:0.575:2	./.
chr21	32253629	rs71321355	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,39:32:71:0.549:2	0/1:22,23:32:45:0.511:2	./.	./.	./.	0/1:1,73:32:74:0.986:2	./.	0/1:65,62:32:127:0.488:2	./.	./.	0/1:45,68:33:113:0.602:2
chr21	32410619	rs2833198	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,20:32:45:0.444:2	0/1:12,6:32:18:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	32493031	rs762194	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:15,8:30:23:0.348:2	0/1:7,13:29:20:0.650:2	0/1:2,3:30:5:0.600:2	./.	0/1:0,15:29:15:1.00:2	0/1:11,14:30:25:0.560:2	./.	./.	./.	0/1:0,16:30:16:1.00:2	0/1:18,9:27:28:0.333:2
chr21	32493056	rs111536576	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,9:32:19:0.474:2	./.	./.
chr21	32499473	rs2070410	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:37,24:33:61:0.393:2	0/1:28,15:32:43:0.349:2	./.	./.	0/1:41,28:32:69:0.406:2	0/1:40,37:32:77:0.481:2	0/1:34,25:33:59:0.424:2	./.	./.	0/1:2,55:33:57:0.965:2	0/1:39,51:32:92:0.567:2
chr21	32582456	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,3:32:42:0.073:2
chr21	32582457	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,3:33:43:0.070:2
chr21	32638549	rs2070417	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,12:31:36:0.333:2	./.	./.	./.
chr21	32638550	rs2070418	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,12:32:35:0.343:2	./.	./.	./.
chr21	32639207	rs371962651	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	32639229	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:31:80:0.050:2
chr21	33060622	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:32:154:0.026:2	./.	./.
chr21	33068937	rs78537042	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,48:31:69:0.696:2	./.	./.	./.	./.	0/1:12,33:32:45:0.733:2	0/1:14,32:30:46:0.696:2	./.
chr21	33068962	rs7280330	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,20:30:66:0.303:2	./.	./.	./.	0/1:45,25:30:70:0.357:2	./.	./.
chr21	33074187	rs78968283	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,7:21:105:0.067:2
chr21	33368188	rs2070371	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,55:33:97:0.567:2	0/1:18,28:33:46:0.609:2	0/1:0,10:33:10:1.00:2	0/1:50,38:32:88:0.432:2	0/1:0,81:32:81:1.00:2	0/1:0,91:33:91:1.00:2	0/1:1,63:33:64:0.984:2	0/1:2,123:33:125:0.984:2	0/1:0,118:34:118:1.00:2	0/1:0,83:33:83:1.00:2	./.
chr21	33370900	rs9305483	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,12:33:34:0.353:2	0/1:10,7:32:17:0.412:2	0/1:0,4:30:4:1.00:2	0/1:21,16:32:37:0.432:2	0/1:2,19:32:21:0.905:2	0/1:0,43:32:43:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,25:32:25:1.00:2	0/1:17,18:32:35:0.514:2	0/1:0,33:32:33:1.00:2	./.
chr21	33371123	rs10775648	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,21:32:45:0.467:2	0/1:16,19:32:35:0.543:2	./.	./.	./.	0/1:34,25:31:59:0.424:2	0/1:64,42:31:106:0.396:2	./.	./.	0/1:0,71:31:71:1.00:2	./.
chr21	33691546	rs62620710	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,36:31:59:0.610:2	./.	./.	./.	./.
chr21	33694224	rs3761342	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,17:30:17:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,43:32:44:1.00:2	0/1:0,30:32:30:1.00:2	./.	0/1:0,15:32:15:1.00:2	0/1:1,20:32:21:0.952:2	0/1:0,26:32:26:1.00:2
chr21	33717877	rs2833779	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr21	33719400	rs9981151	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr21	33719695	rs2070378	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:32:103:1.00:2	0/1:4,60:32:64:0.938:2	0/1:0,8:33:8:1.00:2	0/1:1,128:32:129:0.992:2	0/1:58,54:32:112:0.482:2	0/1:0,71:32:71:1.00:2	0/1:3,77:32:80:0.963:2	0/1:0,122:31:122:1.00:2	0/1:0,140:32:140:1.00:2	0/1:69,34:32:103:0.330:2	0/1:0,97:32:97:1.00:2
chr21	33721642	rs200312105	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,9:30:13:0.692:2	./.	./.	./.	./.	./.	./.	./.	./.
chr21	33727781	rs201625083	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,40:32:97:0.412:2	./.
chr21	33755763	rs2833795	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,16:32:38:0.421:2	./.	./.	./.	./.	./.	0/1:19,32:33:51:0.627:2	./.
chr21	33825678	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,5:33:74:0.068:2	0/1:67,5:32:72:0.069:2	./.	./.	./.
chr21	33825799	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:31:107:0.037:2	./.	./.	./.
chr21	33829960	rs201176516	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:34:191:0.021:2	./.	./.
chr21	33840095	rs8130653	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:18,7:32:25:0.280:2	0/1:6,5:32:11:0.455:2	./.	./.	0/1:13,14:32:28:0.519:2	./.	./.	0/1:19,32:31:51:0.627:2	0/1:25,31:33:56:0.554:2	./.	./.
chr21	33887131	rs1129157	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:32:3:0.667:2	0/1:14,32:32:46:0.696:2	./.	0/1:17,19:31:36:0.528:2	./.	./.	./.	./.	./.
chr21	33949139	rs191355375	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,19:31:48:0.396:2	./.	./.	./.	./.	./.	./.
chr21	33951068	rs9622	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,10:29:22:0.455:2	0/1:88,97:31:185:0.524:2	./.	0/1:101,87:30:188:0.463:2	./.	./.	./.	./.	./.
chr21	33956579	rs2017816	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,7:33:11:0.636:2	0/1:44,54:32:98:0.551:2	./.	0/1:0,94:32:94:1.00:2	0/1:52,39:33:91:0.429:2	./.	./.	0/1:1,102:33:103:0.990:2	./.
chr21	33975515	rs61735781	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,69:32:159:0.434:2	./.	./.	./.
chr21	33984477	rs138178722	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,6:30:28:0.214:2	./.	./.	./.	./.	./.	./.
chr21	34003397	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:31:142:0.028:2	./.	./.	./.	./.	./.
chr21	34003873	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:30:67:0.060:2	./.	./.	./.	./.	./.
chr21	34011412	rs2230766	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,10:31:20:0.500:2	./.
chr21	34014192	rs11702774	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:18,24:32:42:0.571:2	0/1:10,8:32:18:0.444:2	./.	0/1:19,17:31:36:0.472:2	./.	0/1:35,29:31:64:0.453:2	./.	0/1:30,24:32:54:0.444:2	./.	./.	./.
chr21	34014283	rs2833929	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:38,26:31:64:0.406:2	0/1:13,23:32:36:0.639:2	./.	0/1:26,24:31:50:0.480:2	./.	0/1:21,27:32:48:0.563:2	0/1:34,27:32:61:0.443:2	0/1:29,20:32:49:0.408:2	./.	./.	./.
chr21	34059352	rs2254562	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,24:34:55:0.436:2	0/1:9,8:32:17:0.471:2	0/1:0,6:33:6:1.00:2	0/1:30,15:33:45:0.333:2	./.	0/1:32,15:31:47:0.319:2	0/1:12,17:33:29:0.586:2	0/1:27,19:33:46:0.413:2	./.	./.	./.
chr21	34099201	rs61750221	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,62:32:118:0.525:2	./.	./.	./.	./.	./.	./.	./.
chr21	34109714	rs144102538	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,14:31:34:0.412:2	./.
chr21	34117931	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:116,4:31:120:0.033:2	./.	./.	./.	./.	./.	./.
chr21	34166190	rs36096751	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,102:31:102:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,16:30:16:1.00:2	0/1:1,107:31:108:0.991:2	0/1:1,85:31:86:0.988:2	0/1:0,106:30:106:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,93:31:93:1.00:2	0/1:0,122:32:122:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,106:31:106:1.00:2
chr21	34166343	rs2231390	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:32:55:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,76:32:76:1.00:2	0/1:30,26:31:56:0.464:2	0/1:22,28:31:50:0.560:2	0/1:36,40:32:76:0.526:2	0/1:2,81:32:83:0.976:2	0/1:2,50:33:52:0.962:2	./.	0/1:0,71:32:71:1.00:2
chr21	34224040	rs62214304	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,22:31:55:0.400:2	./.	./.	./.	./.
chr21	34399401	rs762178	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,53:27:54:0.981:2	0/1:2,48:26:50:0.960:2	0/1:0,10:27:10:1.00:2	0/1:2,98:27:100:0.980:2	0/1:71,73:26:144:0.507:2	0/1:0,100:26:100:1.00:2	0/1:2,111:26:113:0.982:2	0/1:83,63:26:146:0.432:2	0/1:58,33:27:91:0.363:2	0/1:1,76:26:77:0.987:2	0/1:0,66:26:66:1.00:2
chr21	34400463	rs1059004	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,5:28:5:1.00:2	0/1:0,6:30:6:1.00:2	./.	0/1:0,4:27:4:1.00:2	./.	0/1:0,8:26:8:1.00:2	0/1:0,6:20:6:1.00:2	./.	0/1:1,4:30:5:0.800:2	0/1:0,10:29:10:1.00:2	0/1:0,11:29:11:1.00:2
chr21	34400779	rs6517137	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,11:32:24:0.458:2	./.	./.
chr21	34401272	rs190678312	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,23:29:53:0.434:2	./.	./.	./.	./.	./.	./.	./.
chr21	34401366	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,3:33:50:0.060:2	./.	./.	./.	./.	./.
chr21	34401377	rs13046814	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,25:29:45:0.556:2	0/1:14,14:30:28:0.500:2	0/1:0,2:31:2:1.00:2	0/1:0,65:31:65:1.00:2	0/1:19,18:30:37:0.486:2	0/1:29,22:30:51:0.431:2	0/1:0,29:30:29:1.00:2	./.	0/1:25,37:31:62:0.597:2	0/1:16,19:29:35:0.543:2	0/1:38,34:29:72:0.472:2
chr21	34443760	rs11554599	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:27:10:0.600:2	0/1:2,3:23:5:0.600:2	./.	./.	./.	0/1:9,4:30:14:0.308:2	./.	./.	./.	./.	./.
chr21	34443781	rs762180	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,5:28:8:0.625:2	./.	./.	./.	./.	./.
chr21	34444137	rs11554600	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,42:30:91:0.462:2	./.	./.	./.	./.	./.
chr21	34614193	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,3:34:42:0.071:2	./.	./.	./.	./.	./.
chr21	34614255	rs1051393	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:41,30:29:71:0.423:2	0/1:17,20:28:37:0.541:2	0/1:9,6:29:15:0.400:2	./.	./.	./.	0/1:53,34:28:87:0.391:2	./.	0/1:0,113:29:113:1.00:2	./.	0/1:70,52:29:122:0.426:2
chr21	34624429	rs372402469	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,4:32:41:0.098:2	./.	./.	./.	./.	./.	./.
chr21	34634878	rs1131668	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:4:0.667:2
chr21	34640788	rs2834167	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,60:30:117:0.513:2	0/1:87,63:31:150:0.420:2	0/1:67,59:30:126:0.468:2	./.	0/1:44,86:31:130:0.662:2
chr21	34666376	rs1467845	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,33:32:33:1.00:2	0/1:0,15:33:15:1.00:2	./.	0/1:0,27:32:27:1.00:2	0/1:11,8:34:19:0.421:2	0/1:0,28:32:28:1.00:2	0/1:5,11:31:16:0.688:2	0/1:0,39:33:39:1.00:2	0/1:27,11:32:38:0.289:2	0/1:13,10:34:23:0.435:2	./.
chr21	34715699	rs2257167	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,32:33:64:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr21	34725189	rs201030924	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,21:31:52:0.404:2	0/1:14,23:32:37:0.622:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	34787312	rs9808753	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:35,19:30:54:0.352:2	0/1:26,16:30:42:0.381:2	./.	./.	./.	./.	./.	0/1:42,36:30:78:0.462:2	0/1:50,24:31:74:0.324:2	./.	./.
chr21	34870990	rs62226457	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,15:32:51:0.294:2	0/1:30,13:32:43:0.302:2	0/1:29,19:31:48:0.396:2	./.	./.	0/1:24,25:33:49:0.510:2	0/1:16,20:33:36:0.556:2	0/1:33,25:33:58:0.431:2
chr21	34883618	rs8971	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,5:34:16:0.313:2	0/1:79,63:32:142:0.444:2	0/1:76,61:32:137:0.445:2	0/1:89,72:32:161:0.447:2	./.	./.	0/1:71,63:32:134:0.470:2	0/1:45,65:32:110:0.591:2	0/1:74,71:32:145:0.490:2
chr21	34897113	rs8788	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:31:71:1.00:2	0/1:0,63:31:63:1.00:2	0/1:6,7:32:13:0.538:2	0/1:2,91:31:93:0.978:2	0/1:42,45:31:87:0.517:2	0/1:0,86:31:86:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,101:32:101:1.00:2	0/1:40,40:31:80:0.500:2	0/1:0,90:32:90:1.00:2
chr21	34922173	rs79746820	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,19:32:48:0.396:2	./.	./.
chr21	34922422	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,13:30:51:0.255:2	0/1:16,9:30:25:0.360:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	34924228	rs61746013	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,80:32:181:0.442:2	./.	./.	./.	./.
chr21	34924243	rs16990760	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,16:32:21:0.762:2	0/1:97,90:31:187:0.481:2	0/1:113,83:32:196:0.423:2	0/1:94,93:32:187:0.497:2	./.	./.	0/1:94,98:33:192:0.510:2	0/1:101,91:32:192:0.474:2	0/1:87,96:32:183:0.525:2
chr21	34924849	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:34:196:0.020:2	./.
chr21	34925142	rs13433428	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:31:61:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,65:30:65:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,58:30:58:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,72:30:72:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,45:31:45:1.00:2
chr21	34925627	rs140276173	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,10:28:45:0.227:2	./.	./.	./.	./.	./.
chr21	34925656	rs182885733	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,7:30:85:0.082:2	./.	./.	./.	./.	./.
chr21	34925659	rs148012048	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,20:30:88:0.227:2	./.	./.	./.	./.	./.
chr21	34925669	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:34:106:0.038:2	./.	./.	./.	./.	./.
chr21	34925689	rs61739710	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,10:31:16:0.625:2	0/1:105,76:30:181:0.420:2	0/1:91,63:30:154:0.409:2	0/1:60,73:30:133:0.549:2	./.	./.	0/1:112,80:32:192:0.417:2	0/1:110,62:31:172:0.360:2	0/1:100,85:31:185:0.459:2
chr21	34926043	rs61743204	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,17:30:44:0.386:2	./.	./.	./.	0/1:29,24:32:53:0.453:2
chr21	34926260	rs13047599	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:0,65:32:65:1.00:2	0/1:8,6:32:14:0.429:2	0/1:1,112:32:113:0.991:2	0/1:64,54:31:118:0.458:2	0/1:2,103:31:105:0.981:2	0/1:52,49:31:101:0.485:2	0/1:0,113:32:113:1.00:2	0/1:0,102:33:102:1.00:2	0/1:53,51:32:104:0.490:2	0/1:80,59:32:139:0.424:2
chr21	34929812	rs188229737	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:31:80:0.050:2	./.	./.	./.	./.
chr21	34939501	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,6:29:157:0.038:2	./.	./.	./.	./.	./.
chr21	34939534	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:34:144:0.028:2	./.	./.	./.	./.	./.
chr21	34945721	rs3174808	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,7:33:15:0.467:2	./.	0/1:32,18:33:50:0.360:2	./.	0/1:25,40:33:65:0.615:2	./.	./.	0/1:26,30:32:56:0.536:2	0/1:65,52:33:117:0.444:2
chr21	34960843	rs2015314	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2
chr21	34968503	rs2834240	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,21:32:46:0.457:2	./.	0/1:28,16:31:44:0.364:2	0/1:17,19:31:36:0.528:2	0/1:24,15:32:39:0.385:2	./.	./.	./.
chr21	34997018	rs13050238	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,50:31:106:0.472:2	./.
chr21	35093523	rs13047880	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,47:32:106:0.443:2	./.	./.	./.
chr21	35144404	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:30:128:0.031:2
chr21	35166698	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:128:0.031:2	./.	./.	./.	./.	./.
chr21	35201947	rs1108000	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,14:32:39:0.359:2	./.	0/1:9,13:31:22:0.591:2	0/1:19,5:30:24:0.208:2	0/1:23,11:32:34:0.324:2	./.	./.	./.
chr21	35201957	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,3:31:21:0.143:2	./.	./.	./.	./.	./.	./.
chr21	35202008	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,4:32:23:0.174:2	./.	./.	./.	./.	./.	./.
chr21	35237608	rs9976801	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,14:27:36:0.389:2	0/1:5,4:31:9:0.444:2	0/1:0,5:29:5:1.00:2	0/1:0,38:28:38:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,61:28:61:1.00:2	0/1:0,36:28:36:1.00:2	0/1:37,25:27:62:0.403:2	./.	0/1:20,9:27:29:0.310:2	0/1:31,12:28:43:0.279:2
chr21	35258658	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:29:47:0.085:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	35260481	rs2073370	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,30:31:63:0.476:2	0/1:26,22:30:48:0.458:2	0/1:0,8:31:8:1.00:2	0/1:61,34:30:95:0.358:2	0/1:29,32:30:61:0.525:2	0/1:1,45:31:46:0.978:2	0/1:1,65:30:66:0.985:2	./.	./.	0/1:47,32:29:79:0.405:2	0/1:1,88:30:89:0.989:2
chr21	35260544	rs2834286	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,41:32:75:0.547:2	./.	./.
chr21	35275955	rs9980730	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,50:32:50:1.00:2
chr21	35281393	rs4591	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:35,38:33:73:0.521:2	0/1:16,17:32:33:0.515:2	0/1:1,5:31:6:0.833:2	0/1:49,26:32:75:0.347:2	0/1:35,33:32:68:0.485:2	0/1:0,77:31:77:1.00:2	0/1:0,75:31:75:1.00:2	./.	0/1:62,51:33:113:0.451:2	0/1:1,50:31:52:0.980:2	0/1:1,72:32:73:0.986:2
chr21	35281421	rs4842	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,53:33:118:0.449:2	./.	./.
chr21	35284683	rs78234759	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,18:33:46:0.391:2	./.	./.	./.
chr21	35286740	rs12626438	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,28:33:57:0.500:2	0/1:24,12:32:36:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	35467645	rs8129891	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,89:32:89:1.00:2	0/1:0,81:32:81:1.00:2	0/1:0,92:33:92:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,98:31:98:1.00:2
chr21	35468125	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:133,18:12:152:0.119:2	./.	./.	./.	./.	./.	./.	./.
chr21	35468187	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,59:29:114:0.518:2	0/1:45,21:30:66:0.318:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	35469193	rs4817617	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:32:45:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,42:33:42:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,59:32:59:1.00:2
chr21	35469405	rs141909962	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,18:27:55:0.327:2
chr21	35469852	rs4817618	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,18:31:18:1.00:2	0/1:0,8:32:8:1.00:2	./.	0/1:0,14:32:14:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,15:33:15:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,18:32:18:1.00:2
chr21	35470040	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,31:32:93:0.333:2	./.	./.	./.	./.	./.
chr21	35470042	rs4817619	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,84:32:84:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,92:31:92:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,114:32:114:1.00:2
chr21	35470210	rs4817620	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,54:33:54:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,43:32:43:1.00:2
chr21	35470213	rs4817621	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,30:32:30:1.00:2	0/1:1,28:31:29:0.966:2	0/1:0,52:31:52:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,55:33:55:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,42:32:42:1.00:2
chr21	35471815	rs2211792	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:33:51:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,3:33:3:1.00:2	0/1:0,43:32:43:1.00:2	0/1:17,11:32:28:0.393:2	0/1:0,45:32:45:1.00:2	0/1:1,37:33:38:0.974:2	0/1:25,37:32:62:0.597:2	0/1:0,31:33:31:1.00:2	0/1:22,20:33:42:0.476:2	0/1:0,48:32:49:1.00:2
chr21	35471878	rs2211793	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,20:30:34:0.588:2	./.	./.	./.	0/1:20,10:33:30:0.333:2	./.	0/1:25,17:32:42:0.405:2
chr21	35472847	rs28570507	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,69:28:162:0.426:2
chr21	35472989	rs62212119	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,5:28:18:0.278:2	./.	./.	./.	./.	./.	./.	./.	./.
chr21	35473510	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,3:34:36:0.083:2	./.	./.	./.	./.	./.
chr21	35474410	rs2244724	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:32:104:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,94:31:94:1.00:2	0/1:47,35:31:82:0.427:2	0/1:0,124:30:125:1.00:2	0/1:0,54:31:54:1.00:2	0/1:68,52:30:121:0.433:2	0/1:0,124:32:124:1.00:2	0/1:55,52:31:107:0.486:2	0/1:1,123:31:124:0.992:2
chr21	35475823	rs114419906	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,7:31:18:0.389:2	./.	./.	./.	./.	./.	./.	./.	./.
chr21	35476621	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,3:36:103:0.029:2	./.
chr21	35477194	rs140104162	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,7:29:19:0.368:2	./.	./.	./.	./.	./.
chr21	35477211	rs150052088	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,16:29:29:0.552:2	0/1:14,9:29:23:0.391:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	35478063	rs9984245	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,28:31:57:0.491:2	./.	0/1:44,35:31:79:0.443:2
chr21	35742947	rs74315448	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,49:31:101:0.485:2	./.	./.	./.	./.
chr21	35772977	rs61740755	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,93:33:173:0.538:2	./.	./.	./.	./.
chr21	35821821	rs1805127	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,31:29:55:0.564:2	0/1:24,21:29:45:0.467:2	0/1:0,11:27:12:1.00:2	0/1:42,39:28:81:0.481:2	./.	0/1:0,64:29:64:1.00:2	0/1:48,32:27:80:0.400:2	./.	0/1:26,27:30:53:0.509:2	0/1:41,25:28:66:0.379:2	0/1:32,43:26:75:0.573:2
chr21	35821849	rs17173510	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,22:31:57:0.386:2	0/1:16,18:32:34:0.529:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	35890409	rs59601528	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,98:32:195:0.503:2	./.	./.	./.
chr21	35893935	rs146806035	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,23:30:56:0.411:2	./.	./.	./.	./.	./.	./.	./.
chr21	35987117	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr21	36080290	rs6517254	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:28,24:30:52:0.462:2	0/1:13,9:31:22:0.409:2	0/1:6,5:31:11:0.455:2	0/1:0,46:30:46:1.00:2	0/1:19,8:31:27:0.296:2	0/1:26,28:30:54:0.519:2	0/1:19,21:31:40:0.525:2	./.	0/1:42,32:32:74:0.432:2	0/1:19,23:31:42:0.548:2	0/1:0,74:31:74:1.00:2
chr21	36088624	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.
chr21	36206858	rs145230602	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:19,15:30:34:0.441:2	0/1:8,4:31:12:0.333:2	./.	0/1:24,14:29:39:0.368:2	./.	./.	./.	./.	./.	./.	./.
chr21	37410477	rs2835239	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,57:29:127:0.449:2	./.	0/1:63,95:29:158:0.601:2	./.	./.	./.
chr21	37429662	rs117181117	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,52:31:151:0.344:2	./.	./.	./.
chr21	37429679	rs7282629	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,130:32:130:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,178:33:178:1.00:2	0/1:0,147:32:147:1.00:2	0/1:0,180:32:180:1.00:2	0/1:0,134:33:135:1.00:2	0/1:0,148:32:148:1.00:2	0/1:0,179:33:179:1.00:2	0/1:0,161:32:161:1.00:2	0/1:0,180:33:180:1.00:2
chr21	37431186	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,15:31:40:0.375:2	./.	./.	./.	./.	./.
chr21	37442632	rs25678	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,23:32:51:0.451:2	./.	./.	./.	./.
chr21	37444697	rs2835266	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,55:32:109:0.505:2	./.	0/1:97,76:33:173:0.439:2	./.	./.	./.
chr21	37507501	rs8133052	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,11:31:11:1.00:2	./.	./.	./.	0/1:0,8:31:8:1.00:2	./.	0/1:0,15:31:15:1.00:2	./.
chr21	37507745	rs881711	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,22:32:58:0.379:2	0/1:20,13:31:34:0.394:2	0/1:5,12:31:17:0.706:2	0/1:0,101:31:101:1.00:2	0/1:48,40:31:88:0.455:2	0/1:0,95:31:95:1.00:2	0/1:0,101:31:101:1.00:2	0/1:0,103:31:103:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,61:31:61:1.00:2
chr21	37507769	rs881712	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,85:30:86:0.988:2	0/1:36,27:29:63:0.429:2	./.	./.	0/1:61,29:31:90:0.322:2	./.	0/1:3,47:30:50:0.940:2	0/1:32,17:31:49:0.347:2
chr21	37518582	rs17849671	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,28:32:62:0.452:2	./.	0/1:25,31:32:56:0.554:2	./.	./.	./.
chr21	37518706	rs1056892	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:42,36:31:78:0.462:2	0/1:19,9:31:28:0.321:2	0/1:5,6:28:11:0.545:2	./.	./.	0/1:62,44:30:106:0.415:2	0/1:4,112:30:116:0.966:2	./.	0/1:0,75:31:75:1.00:2	./.	0/1:50,29:30:79:0.367:2
chr21	37603196	rs145155731	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,27:30:54:0.500:2	./.	./.	./.	./.
chr21	37609571	rs2835322	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,72:29:73:0.986:2	0/1:0,41:30:41:1.00:2	0/1:8,4:27:12:0.333:2	./.	0/1:58,61:30:119:0.513:2	0/1:1,118:30:120:0.992:2	0/1:1,142:30:143:0.993:2	0/1:74,76:29:150:0.507:2	0/1:0,96:29:96:1.00:2	0/1:45,45:29:91:0.500:2	0/1:55,38:29:93:0.409:2
chr21	37617630	rs4817788	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:30:39:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,57:29:57:1.00:2	0/1:28,40:29:68:0.588:2	0/1:0,68:29:68:1.00:2	0/1:0,53:30:53:1.00:2	0/1:36,38:29:74:0.514:2	0/1:0,36:30:36:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,30:30:30:1.00:2
chr21	37617724	rs3746866	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,28:29:50:0.560:2	0/1:28,32:31:60:0.533:2	./.	./.	0/1:22,34:30:57:0.607:2	./.	0/1:23,24:30:47:0.511:2	./.
chr21	37618530	rs61752464	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,39:28:86:0.453:2	./.	./.	./.	./.	./.	./.
chr21	37653858	rs147782382	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,4:32:138:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr21	37661405	rs3827183	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,69:32:136:0.507:2	0/1:31,42:32:73:0.575:2	./.	./.	0/1:66,52:32:118:0.441:2	./.	0/1:30,51:32:81:0.630:2	./.
chr21	37664501	rs9978057	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,20:32:44:0.455:2	0/1:16,14:31:30:0.467:2	./.	./.	./.	0/1:24,9:30:33:0.273:2	./.	./.	./.	./.	0/1:31,11:30:42:0.262:2
chr21	37692589	rs2236433	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:15,5:31:20:0.250:2	./.	./.	./.	./.	./.	0/1:6,12:31:18:0.667:2	./.	./.	./.	./.
chr21	37734466	rs78183842	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,62:28:120:0.521:2	./.	./.	0/1:86,76:30:162:0.469:2	./.	./.
chr21	37736438	rs61741099	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,39:31:114:0.342:2	./.	./.	0/1:61,52:32:113:0.460:2	./.	./.
chr21	37741352	rs61739936	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,29:31:68:0.426:2	./.	./.	./.
chr21	37759957	rs62229404	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,153:31:156:0.981:2	./.	./.	./.	./.	./.	./.	./.
chr21	37833307	rs219780	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,13:31:28:0.464:2	./.	./.	./.	0/1:95,104:31:199:0.523:2	./.	./.	./.	0/1:62,79:30:141:0.560:2
chr21	37833662	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,3:33:54:0.056:2	./.	./.	./.
chr21	37833751	rs219779	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,5:31:11:0.455:2	./.	./.	0/1:26,21:31:47:0.447:2	0/1:18,31:32:49:0.633:2	./.	0/1:29,23:32:52:0.442:2	./.	0/1:8,31:30:39:0.795:2
chr21	37833893	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:34:82:0.049:2	./.	./.	./.	./.	./.
chr21	37833931	rs117560775	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,18:32:47:0.383:2	./.	./.	0/1:23,18:31:41:0.439:2	./.	./.
chr21	38081480	rs116988298	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,42:30:60:0.700:2	./.	./.
chr21	38117040	rs2073416	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	0/1:23,19:31:42:0.452:2	0/1:24,20:31:44:0.455:2	0/1:18,29:31:47:0.617:2	./.	./.	./.
chr21	38117308	rs2073601	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,44:30:84:0.524:2	0/1:52,35:30:87:0.402:2	./.	0/1:55,51:30:106:0.481:2	./.	./.	./.
chr21	38117505	rs2073602	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,22:30:22:1.00:2	./.	./.	0/1:117,77:29:195:0.397:2	0/1:3,181:30:184:0.984:2	0/1:97,92:31:189:0.487:2	./.	./.	./.
chr21	38118089	rs9982519	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,26:33:69:0.377:2	0/1:20,33:33:53:0.623:2	./.	0/1:45,26:33:71:0.366:2	./.	./.	./.
chr21	38128932	rs61732507	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:99,74:31:173:0.428:2	./.	./.	./.	./.	./.	./.
chr21	38137323	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:33:64:0.063:2	./.	./.
chr21	38308774	rs61732501	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,38:31:73:0.521:2	./.	./.	./.	./.	./.	./.	./.
chr21	38308911	rs1065758	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,74:31:143:0.517:2	./.	./.	./.	0/1:47,44:30:91:0.484:2
chr21	38385925	rs77429661	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,87:32:87:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr21	38438006	rs16994704	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,23:32:67:0.343:2	./.
chr21	38444863	rs2507733	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:32:37:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,28:31:29:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,57:31:57:1.00:2
chr21	38444881	rs73200245	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,17:30:47:0.362:2	./.	./.	0/1:10,11:30:21:0.524:2	./.	./.	./.	./.
chr21	38466366	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:131,5:32:136:0.037:2	./.	./.	./.	./.	./.	0/1:81,4:32:85:0.047:2	0/1:149,8:32:158:0.051:2
chr21	38468958	rs2835600	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,34:32:58:0.586:2	0/1:12,18:32:30:0.600:2	0/1:0,5:30:5:1.00:2	0/1:20,51:32:71:0.718:2	0/1:0,37:31:37:1.00:2	0/1:42,46:32:88:0.523:2	./.	0/1:1,80:32:81:0.988:2	0/1:28,47:33:75:0.627:2	0/1:2,52:32:54:0.963:2	0/1:59,38:32:97:0.392:2
chr21	38494273	rs61999340	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,48:32:80:0.600:2	./.	./.
chr21	38512956	rs1133001	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:12,10:32:22:0.455:2	0/1:4,8:31:12:0.667:2	./.	0/1:22,7:32:29:0.241:2	./.	0/1:11,13:33:24:0.542:2	0/1:0,5:32:5:1.00:2	./.	0/1:10,8:32:18:0.444:2	./.	0/1:13,16:32:29:0.552:2
chr21	38522456	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,8:32:196:0.041:2	./.	0/1:188,7:33:195:0.036:2	./.
chr21	38524262	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:32:118:0.034:2	./.
chr21	38525356	rs1053808	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:33,23:28:56:0.411:2	0/1:18,11:28:29:0.379:2	./.	0/1:36,26:29:62:0.419:2	./.	0/1:43,21:29:64:0.328:2	0/1:0,29:28:29:1.00:2	./.	0/1:50,29:28:79:0.367:2	./.	0/1:62,45:27:107:0.421:2
chr21	38528987	rs62223645	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,29:31:65:0.446:2	./.	./.	0/1:20,19:31:39:0.487:2	./.	./.	./.	0/1:63,64:32:127:0.504:2
chr21	38532065	rs201694365	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,15:32:34:0.441:2	./.
chr21	38538512	rs181529451	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,51:32:111:0.459:2	./.	./.	./.	./.	./.	./.	./.
chr21	38538537	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:34:107:0.037:2	./.
chr21	38539844	rs2000415	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:45,30:31:75:0.400:2	0/1:42,24:31:66:0.364:2	./.	0/1:45,44:31:89:0.494:2	./.	0/1:58,27:30:85:0.318:2	0/1:36,36:30:72:0.500:2	./.	0/1:61,47:31:108:0.435:2	0/1:41,37:31:78:0.474:2	0/1:72,53:31:125:0.424:2
chr21	38559400	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,6:31:129:0.047:2	./.
chr21	38563725	rs2835655	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,38:33:94:0.404:2	0/1:28,22:33:50:0.440:2	./.	./.	./.	0/1:49,36:32:85:0.424:2	0/1:43,21:32:64:0.328:2	./.	0/1:48,49:33:97:0.505:2	./.	0/1:69,69:33:138:0.500:2
chr21	38568009	rs1053966	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:68,94:33:163:0.580:2	0/1:38,51:32:89:0.573:2	./.	0/1:93,87:33:180:0.483:2	./.	0/1:96,85:32:181:0.470:2	0/1:3,164:33:167:0.982:2	./.	0/1:87,84:33:171:0.491:2	0/1:107,71:33:178:0.399:2	0/1:92,72:33:164:0.439:2
chr21	38568308	rs6579	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:28,45:32:73:0.616:2	0/1:41,20:32:61:0.328:2	./.	0/1:61,41:31:102:0.402:2	./.	0/1:48,51:31:99:0.515:2	0/1:2,73:32:75:0.973:2	./.	0/1:63,39:33:102:0.382:2	./.	0/1:69,38:32:107:0.355:2
chr21	38569874	rs146011177	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,46:30:102:0.451:2	./.	./.	./.	./.	./.
chr21	38572565	rs150750778	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,68:33:141:0.482:2	./.
chr21	38878612	rs184784885	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,11:32:17:0.647:2	./.	./.	./.	./.	./.	./.	./.	./.
chr21	38997677	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,4:32:78:0.051:2	./.	./.	./.
chr21	38997701	rs702859	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,87:32:87:1.00:2	0/1:0,58:31:58:1.00:2	./.	0/1:43,31:31:74:0.419:2	0/1:30,34:31:64:0.531:2	0/1:57,39:31:96:0.406:2	0/1:2,88:31:90:0.978:2	0/1:0,78:31:78:1.00:2	0/1:0,87:32:87:1.00:2	0/1:40,30:31:70:0.429:2	0/1:47,45:32:92:0.489:2
chr21	39086965	rs2070995	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,28:29:28:1.00:2	0/1:0,11:28:11:1.00:2	./.	0/1:0,14:28:14:1.00:2	0/1:14,7:30:21:0.333:2	0/1:15,11:28:26:0.423:2	0/1:0,17:28:17:1.00:2	0/1:25,6:29:31:0.194:2	0/1:12,11:28:23:0.478:2	0/1:23,6:29:29:0.207:2	0/1:26,16:29:42:0.381:2
chr21	39213020	rs2836016	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,7:29:12:0.583:2	0/1:1,62:31:63:0.984:2	0/1:31,32:29:63:0.508:2	./.	0/1:0,49:30:49:1.00:2	0/1:0,69:30:69:1.00:2	./.	./.	0/1:0,75:31:75:1.00:2
chr21	39325234	rs2836061	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:51,36:32:87:0.414:2	0/1:26,17:32:43:0.395:2	./.	./.	0/1:54,49:30:103:0.476:2	./.	./.	0/1:68,58:31:126:0.460:2	./.	./.	0/1:64,51:32:115:0.443:2
chr21	39671476	rs2230033	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,8:32:14:0.571:2	0/1:34,34:31:68:0.500:2	0/1:18,29:31:47:0.617:2	0/1:33,34:31:67:0.507:2	0/1:1,50:31:51:0.980:2	./.	0/1:36,23:31:59:0.390:2	0/1:53,40:32:93:0.430:2	./.
chr21	39672624	rs9963	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:32:6:1.00:2	0/1:21,19:33:40:0.475:2	0/1:19,18:33:37:0.486:2	0/1:8,11:32:19:0.579:2	0/1:0,18:32:18:1.00:2	0/1:0,32:32:32:1.00:2	0/1:11,21:33:32:0.656:2	0/1:12,9:34:21:0.429:2	./.
chr21	39673219	rs55805345	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,5:29:94:0.053:2	./.	./.	./.	./.	./.	./.
chr21	39673248	rs183037515	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:148,4:33:152:0.026:2	./.	./.	./.	./.	./.	./.	./.
chr21	39673299	rs1064273	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,42:30:86:0.488:2	0/1:24,20:31:44:0.455:2	0/1:53,31:31:84:0.369:2	0/1:2,44:31:46:0.957:2	./.	0/1:49,24:31:73:0.329:2	0/1:39,19:32:58:0.328:2	./.
chr21	39772498	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:30:91:0.044:2
chr21	39774531	rs182185665	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,12:30:32:0.375:2	./.	./.	./.
chr21	39775468	rs17853963	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,78:31:168:0.464:2
chr21	39817446	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:34:167:0.024:2	./.
chr21	39870310	rs2836441	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,32:32:32:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,41:32:41:1.00:2	0/1:22,16:32:38:0.421:2	0/1:0,35:32:35:1.00:2	0/1:2,27:32:29:0.931:2	0/1:24,26:32:50:0.520:2	0/1:0,51:33:51:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,47:33:47:1.00:2
chr21	40181949	rs202089652	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,7:19:90:0.078:2	./.	./.	./.
chr21	40191431	rs457705	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,34:27:35:0.971:2	0/1:0,18:30:18:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,75:29:75:1.00:2	0/1:0,63:29:63:1.00:2	0/1:0,44:28:44:1.00:2	0/1:1,68:29:69:0.986:2	0/1:35,42:29:77:0.545:2	./.	0/1:0,38:29:38:1.00:2	0/1:0,51:27:51:1.00:2
chr21	40191638	rs461155	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,33:32:34:0.971:2	0/1:0,20:30:20:1.00:2	0/1:0,7:30:7:1.00:2	0/1:1,43:31:44:0.977:2	0/1:1,35:30:36:0.972:2	0/1:0,52:30:52:1.00:2	0/1:1,33:31:34:0.971:2	0/1:24,19:31:43:0.442:2	./.	0/1:0,42:30:42:1.00:2	0/1:0,36:30:36:1.00:2
chr21	40549466	rs14194	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,24:30:50:0.480:2	0/1:16,15:28:31:0.484:2	0/1:40,25:29:65:0.385:2	./.	0/1:28,20:29:48:0.417:2	0/1:23,18:29:41:0.439:2	0/1:17,10:30:27:0.370:2	0/1:0,50:29:50:1.00:2
chr21	40552307	rs3171465	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,45:32:45:1.00:2	0/1:2,43:33:45:0.956:2	./.	0/1:44,22:32:66:0.333:2	0/1:17,29:33:46:0.630:2	0/1:28,38:32:66:0.576:2	0/1:25,15:33:40:0.375:2	0/1:44,28:32:72:0.389:2	0/1:39,37:34:76:0.487:2	0/1:12,28:33:40:0.700:2	./.
chr21	40571246	rs1041439	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:1,21:32:22:0.955:2	0/1:0,8:33:8:1.00:2	0/1:0,60:33:60:1.00:2	0/1:1,25:32:26:0.962:2	0/1:0,52:32:52:1.00:2	0/1:24,19:31:43:0.442:2	0/1:0,44:32:44:1.00:2	0/1:0,52:33:52:1.00:2	0/1:0,51:33:51:1.00:2	0/1:0,76:33:76:1.00:2
chr21	40574305	rs2183573	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,51:33:51:1.00:2	0/1:0,22:32:22:1.00:2	./.	0/1:22,29:32:51:0.569:2	0/1:19,25:32:44:0.568:2	0/1:22,16:31:38:0.421:2	0/1:15,16:32:31:0.516:2	0/1:28,38:32:66:0.576:2	0/1:29,24:33:53:0.453:2	0/1:23,13:32:36:0.361:2	./.
chr21	40584598	rs6517529	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,110:32:110:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,136:32:136:1.00:2	0/1:0,76:31:76:1.00:2	0/1:0,106:31:106:1.00:2	0/1:47,34:32:81:0.420:2	0/1:0,118:31:118:1.00:2	0/1:0,134:33:134:1.00:2	0/1:0,115:32:115:1.00:2	0/1:0,149:32:149:1.00:2
chr21	40652142	rs2836972	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,7:31:7:1.00:2	0/1:42,35:30:77:0.455:2	0/1:29,16:31:45:0.356:2	0/1:34,21:30:55:0.382:2	./.	0/1:49,31:30:80:0.388:2	0/1:28,24:32:52:0.462:2	0/1:33,32:31:65:0.492:2	0/1:0,82:32:82:1.00:2
chr21	40670460	rs2056844	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,146:29:146:1.00:2	0/1:0,78:29:78:1.00:2	./.	0/1:97,84:30:181:0.464:2	0/1:95,66:29:161:0.410:2	0/1:92,73:29:165:0.442:2	0/1:80,72:30:152:0.474:2	0/1:91,87:28:178:0.489:2	0/1:81,98:30:179:0.547:2	0/1:100,81:29:181:0.448:2	./.
chr21	40684975	rs35687055	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:2,5:28:7:0.714:2	./.	./.	./.	./.	./.	./.	0/1:2,3:25:5:0.600:2	./.	./.
chr21	40685239	rs34240248	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,6:33:6:1.00:2	0/1:0,3:32:3:1.00:2	./.	0/1:7,6:33:13:0.462:2	0/1:10,9:32:19:0.474:2	0/1:3,12:31:15:0.800:2	0/1:14,11:31:25:0.440:2	0/1:14,13:33:27:0.481:2	0/1:4,6:33:10:0.600:2	0/1:8,4:32:12:0.333:2	./.
chr21	40685246	rs34436313	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,6:31:6:1.00:2	0/1:0,3:31:3:1.00:2	./.	0/1:5,5:31:10:0.500:2	0/1:9,10:29:19:0.526:2	0/1:3,11:29:14:0.786:2	0/1:14,11:29:25:0.440:2	0/1:14,13:29:27:0.481:2	0/1:3,5:31:8:0.625:2	0/1:6,4:31:10:0.400:2	./.
chr21	40717137	rs139139360	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,30:31:70:0.429:2	./.	./.	./.	./.	./.	./.
chr21	40720494	rs34613278	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:10,15:33:25:0.600:2	0/1:5,9:31:16:0.643:2	0/1:0,3:28:3:1.00:2	./.	./.	0/1:9,21:31:30:0.700:2	./.	./.	./.	./.	./.
chr21	40762751	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:31:133:0.030:2	./.	./.	./.	./.
chr21	40778182	rs11558767	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:85,103:31:188:0.548:2	./.	./.	./.	./.	./.	0/1:106,82:32:188:0.436:2
chr21	40795344	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,20:33:48:0.417:2	0/1:20,12:32:32:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	40800371	rs2837029	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:29,16:33:45:0.356:2	0/1:15,16:33:31:0.516:2	./.	0/1:24,26:33:50:0.520:2	./.	./.	./.	0/1:35,34:33:69:0.493:2	./.	0/1:29,16:32:45:0.356:2	0/1:47,27:33:74:0.365:2
chr21	40823860	rs61732692	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,18:26:43:0.419:2
chr21	40823902	rs11575939	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:24,21:33:45:0.467:2	0/1:18,11:32:29:0.379:2	0/1:2,5:32:7:0.714:2	./.	./.	./.	./.	0/1:30,22:33:52:0.423:2	./.	0/1:19,23:32:42:0.548:2	0/1:33,29:30:62:0.468:2
chr21	40823981	rs6517549	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,131:30:131:1.00:2	0/1:0,85:31:85:1.00:2	0/1:0,13:28:13:1.00:2	0/1:0,148:29:148:1.00:2	0/1:0,100:29:100:1.00:2	0/1:0,132:29:133:1.00:2	0/1:0,119:29:119:1.00:2	0/1:0,126:30:126:1.00:2	0/1:0,114:31:114:1.00:2	0/1:0,116:30:116:1.00:2	0/1:0,141:30:141:1.00:2
chr21	40871810	rs9974333	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:36,34:30:70:0.486:2	0/1:19,10:28:29:0.345:2	./.	0/1:49,48:31:97:0.495:2	./.	0/1:2,72:30:74:0.973:2	0/1:0,78:29:78:1.00:2	0/1:64,31:30:95:0.326:2	0/1:0,99:31:99:1.00:2	0/1:35,35:29:70:0.500:2	0/1:74,29:30:103:0.282:2
chr21	40871833	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.
chr21	40969826	rs662571	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:31:69:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,90:33:90:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,114:32:114:1.00:2	0/1:0,97:33:97:1.00:2	0/1:0,85:33:85:1.00:2	0/1:0,99:32:99:1.00:2
chr21	41032740	rs3746887	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,15:29:35:0.429:2	0/1:16,10:29:26:0.385:2	./.	0/1:0,30:29:30:1.00:2	0/1:0,38:28:38:1.00:2	0/1:0,40:28:40:1.00:2	0/1:25,24:27:49:0.490:2	0/1:46,21:29:67:0.313:2	0/1:0,47:30:47:1.00:2	0/1:17,11:29:28:0.393:2	0/1:0,30:28:30:1.00:2
chr21	41032804	rs734413	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,19:31:31:0.613:2	0/1:21,10:32:31:0.323:2	0/1:5,5:32:10:0.500:2	0/1:0,29:31:30:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,30:31:30:1.00:2	0/1:23,11:31:34:0.324:2	0/1:23,22:32:45:0.489:2	0/1:0,41:32:41:1.00:2	0/1:13,16:32:29:0.552:2	0/1:0,31:32:31:1.00:2
chr21	41033062	rs734412	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,15:31:38:0.395:2	0/1:12,22:31:34:0.647:2	./.	./.	./.	./.	0/1:16,16:31:32:0.500:2	./.
chr21	41033471	rs74843485	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,114:32:118:0.983:2
chr21	41033816	rs909182	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:32,31:31:63:0.492:2	0/1:18,14:30:32:0.438:2	./.	./.	0/1:41,39:31:80:0.488:2	0/1:50,46:30:96:0.479:2	./.	./.	./.	./.	./.
chr21	41034214	rs148277804	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,24:31:56:0.429:2	./.	./.	./.	./.	./.	./.	./.
chr21	41034215	rs2837109	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,30:31:55:0.545:2	0/1:25,21:30:46:0.457:2	0/1:20,30:30:50:0.600:2	0/1:23,26:31:49:0.531:2	0/1:30,22:32:52:0.423:2	0/1:0,70:32:70:1.00:2	0/1:23,33:32:56:0.589:2	0/1:0,26:32:26:1.00:2
chr21	41137499	rs12626544	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:12,10:33:22:0.455:2	./.	./.	0/1:19,5:33:24:0.208:2	./.	./.	0/1:15,6:32:21:0.286:2	0/1:0,30:32:30:1.00:2	./.	./.	0/1:8,11:33:19:0.579:2
chr21	41137507	rs2205204	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,23:32:23:1.00:2	0/1:0,10:32:10:1.00:2	./.	0/1:0,26:31:26:1.00:2	./.	0/1:14,16:31:30:0.533:2	0/1:1,27:32:28:0.964:2	0/1:0,35:32:35:1.00:2	0/1:16,14:32:30:0.467:2	0/1:15,9:33:24:0.375:2	0/1:1,20:31:21:0.952:2
chr21	41142932	rs8129968	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,24:32:25:0.960:2	./.	./.	./.	./.	./.	./.
chr21	41142940	rs2837200	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:13,12:32:25:0.480:2	0/1:6,9:32:15:0.600:2	./.	0/1:15,4:33:19:0.211:2	./.	./.	0/1:21,8:33:29:0.276:2	./.	0/1:10,22:32:32:0.688:2	0/1:11,4:32:15:0.267:2	0/1:11,19:32:30:0.633:2
chr21	41164006	rs200802075	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,25:31:51:0.490:2	./.	./.
chr21	41165462	rs2837225	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:68,45:31:113:0.398:2	0/1:24,44:32:68:0.647:2	./.	0/1:59,45:31:104:0.433:2	./.	./.	0/1:62,30:30:92:0.326:2	0/1:0,114:30:114:1.00:2	./.	./.	0/1:77,77:30:154:0.500:2
chr21	41414590	rs200764944	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,28:31:56:0.500:2	./.
chr21	41416066	rs16999204	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,90:32:191:0.471:2	./.	./.	./.
chr21	41434841	rs2837409	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,28:32:56:0.500:2	0/1:24,34:33:58:0.586:2	./.	0/1:31,32:33:63:0.508:2	0/1:18,16:33:34:0.471:2	0/1:29,31:31:60:0.517:2	./.	0/1:35,26:33:61:0.426:2	./.	./.	0/1:25,26:33:51:0.510:2
chr21	41447058	rs7275460	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:82,73:30:155:0.471:2	0/1:46,57:30:103:0.553:2	./.	./.	./.	./.	./.	0/1:97,91:30:188:0.484:2	./.	./.	./.
chr21	41455854	rs2297263	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:36,27:32:63:0.429:2	0/1:29,22:32:51:0.431:2	./.	./.	./.	./.	./.	0/1:52,43:31:95:0.453:2	./.	./.	./.
chr21	41465664	rs62237594	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,7:21:111:0.063:2
chr21	41710090	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,5:28:139:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	41725630	rs2297270	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,17:35:26:0.654:2	./.	./.
chr21	42064785	rs79669041	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,37:32:84:0.440:2	./.	./.	./.	./.	./.	./.
chr21	42551130	rs77271505	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,74:30:153:0.490:2	0/1:62,67:31:130:0.519:2	0/1:174,5:28:180:0.028:2	./.	./.	./.	./.
chr21	42551245	rs200941231	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:32:136:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	42551262	rs148005727	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:111,73:30:184:0.397:2	0/1:61,80:29:141:0.567:2	./.	./.	./.	./.	./.
chr21	42551270	rs199893430	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,5:27:95:0.053:2
chr21	42551311	rs201045863	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:41,5:26:46:0.109:2	./.	0/1:131,7:23:138:0.051:2	./.	./.	./.	0/1:131,6:24:137:0.044:2	./.	./.	./.
chr21	42551425	rs5019195	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,35:31:170:0.206:2	0/1:91,15:33:106:0.142:2	./.	./.
chr21	42551432	rs5019194	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,25:31:157:0.159:2	0/1:91,11:32:102:0.108:2	./.	./.
chr21	42551433	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,11:26:144:0.076:2	0/1:93,4:31:97:0.041:2	./.	./.
chr21	42551626	rs16998089	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:39,27:30:66:0.409:2	0/1:32,22:29:54:0.407:2	./.	./.	./.	./.	./.
chr21	42552869	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,43:33:89:0.483:2
chr21	42552901	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,22:29:46:0.478:2	./.
chr21	42553138	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,12:32:25:0.480:2	./.	./.	./.	./.	./.	./.
chr21	42553218	rs76961289	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,6:33:16:0.375:2	0/1:13,15:32:28:0.536:2	./.	./.	./.	./.	./.
chr21	42553633	rs62217945	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:33:6:0.500:2	./.	./.	./.	./.	0/1:31,28:30:59:0.475:2	0/1:36,30:31:66:0.455:2	./.	./.
chr21	42554634	rs73902944	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,23:29:51:0.451:2	0/1:39,39:29:78:0.500:2	0/1:25,38:29:63:0.603:2	./.	./.	./.	0/1:50,54:30:104:0.519:2
chr21	42554997	rs55874010	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,13:27:35:0.371:2	0/1:53,34:28:87:0.391:2	0/1:47,20:27:67:0.299:2	./.	./.	./.	0/1:38,32:28:70:0.457:2
chr21	42555005	rs7278659	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,84:33:84:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,96:33:96:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,86:33:86:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,96:33:96:1.00:2	0/1:0,119:34:119:1.00:2	0/1:0,58:33:58:1.00:2	0/1:0,78:33:78:1.00:2
chr21	42556410	rs74742373	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,15:32:48:0.313:2	./.	0/1:35,28:31:63:0.444:2	./.	./.	./.	0/1:47,37:32:84:0.440:2
chr21	42556885	rs8130833	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,13:29:27:0.481:2	./.	0/1:15,11:30:26:0.423:2	./.	0/1:31,19:30:50:0.380:2	./.	0/1:26,27:30:53:0.509:2
chr21	42622786	rs1046210	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:41,34:32:76:0.453:2	0/1:27,24:32:51:0.471:2	0/1:3,3:31:6:0.500:2	./.	./.	0/1:0,60:31:60:1.00:2	0/1:31,31:32:62:0.500:2	0/1:63,30:31:93:0.323:2	0/1:1,64:32:65:0.985:2	0/1:49,24:32:73:0.329:2	0/1:58,39:31:97:0.402:2
chr21	42647372	rs149345353	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,22:30:56:0.393:2	./.
chr21	42694870	rs2838012	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:31:8:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.
chr21	42710418	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:32:65:0.062:2	./.	./.
chr21	42717662	rs417708	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:28:39:1.00:2	0/1:1,20:28:21:0.952:2	0/1:0,6:27:6:1.00:2	0/1:35,18:29:53:0.340:2	0/1:0,30:28:30:1.00:2	0/1:0,41:28:41:1.00:2	0/1:25,22:28:47:0.468:2	0/1:0,45:28:45:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,33:29:33:1.00:2	0/1:2,59:28:61:0.967:2
chr21	42767625	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,10:32:97:0.103:2	./.	./.	./.	./.
chr21	42770896	rs141083003	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,22:31:48:0.458:2	./.	./.	./.	./.	./.	./.
chr21	42771176	rs2301803	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,14:29:37:0.378:2	./.	./.	./.	./.
chr21	42771235	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,36:33:90:0.400:2
chr21	42775555	rs462161	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:32:51:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,81:33:81:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,74:33:74:1.00:2	0/1:1,67:32:68:0.985:2	0/1:0,66:32:66:1.00:2
chr21	42812891	rs467960	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:40,34:30:74:0.459:2	0/1:21,22:31:43:0.512:2	0/1:0,6:32:6:1.00:2	./.	0/1:64,31:31:95:0.326:2	0/1:1,80:31:81:0.988:2	0/1:51,40:30:91:0.440:2	0/1:63,52:32:116:0.452:2	0/1:66,46:32:112:0.411:2	0/1:0,60:32:60:1.00:2	0/1:0,88:32:88:1.00:2
chr21	42817443	rs146088894	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:34:72:0.056:2	./.	./.	./.
chr21	42817930	rs469390	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:53,35:33:88:0.398:2	0/1:35,22:32:57:0.386:2	./.	./.	0/1:53,22:31:75:0.293:2	0/1:0,73:31:73:1.00:2	0/1:62,35:32:97:0.361:2	0/1:88,49:32:137:0.358:2	0/1:76,29:31:105:0.276:2	0/1:0,80:32:80:1.00:2	0/1:1,84:32:86:0.988:2
chr21	42821113	rs2070229	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,11:31:23:0.478:2	./.	0/1:10,9:31:19:0.474:2	./.	0/1:5,17:31:22:0.773:2	0/1:11,17:32:28:0.607:2	./.	./.
chr21	42824661	rs1050008	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,15:27:32:0.469:2	0/1:16,21:29:37:0.568:2	./.	0/1:8,17:30:25:0.680:2	./.	./.	./.	./.
chr21	42824733	rs469304	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,29:31:29:1.00:2	0/1:1,13:31:14:0.929:2	./.	./.	0/1:17,12:31:29:0.414:2	0/1:27,17:31:44:0.386:2	0/1:21,15:31:36:0.417:2	0/1:16,18:31:36:0.529:2	0/1:23,14:31:37:0.378:2	0/1:0,38:31:38:1.00:2	0/1:0,39:31:39:1.00:2
chr21	42845374	rs2298659	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,40:31:65:0.615:2	0/1:14,41:30:55:0.745:2	./.	0/1:1,51:31:52:0.981:2	./.	./.	./.	./.
chr21	42845383	rs17854725	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,36:28:36:1.00:2	0/1:0,16:29:16:1.00:2	./.	./.	0/1:47,19:27:66:0.288:2	./.	0/1:37,21:30:58:0.362:2	0/1:22,21:27:43:0.488:2	0/1:28,11:28:39:0.282:2	0/1:2,22:29:24:0.917:2	0/1:2,19:29:21:0.905:2
chr21	42852435	rs61735789	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:31:9:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.
chr21	42852497	rs12329760	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,46:31:108:0.426:2	./.	0/1:64,55:31:119:0.462:2	0/1:2,73:32:75:0.973:2	./.	./.	./.	./.
chr21	42866296	rs3787950	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,26:29:56:0.464:2	0/1:28,19:31:47:0.404:2	0/1:23,22:29:45:0.489:2	./.	./.	./.	0/1:22,21:31:43:0.488:2	./.
chr21	42866332	rs61735792	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,32:31:70:0.464:2	0/1:20,10:32:30:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	43161022	rs7276592	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,6:31:10:0.600:2	0/1:1,4:31:5:0.800:2	./.	0/1:0,26:30:26:1.00:2	0/1:10,4:22:14:0.286:2	0/1:6,12:32:18:0.667:2	./.	0/1:20,15:30:35:0.429:2	0/1:7,14:31:21:0.667:2	0/1:5,5:30:10:0.500:2	./.
chr21	43161357	rs3746891	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:28:38:1.00:2	0/1:0,16:28:16:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,40:28:40:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,57:28:57:1.00:2	0/1:0,37:29:37:1.00:2	0/1:0,39:28:39:1.00:2	0/1:0,25:29:25:1.00:2	0/1:0,40:29:40:1.00:2	0/1:0,16:29:16:1.00:2
chr21	43161500	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,4:32:14:0.286:2	./.	./.	./.	./.	./.
chr21	43161805	rs2838113	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,30:30:31:0.968:2	0/1:0,16:31:16:1.00:2	./.	0/1:0,55:31:55:1.00:2	0/1:45,41:30:86:0.477:2	0/1:36,37:31:73:0.507:2	./.	0/1:54,34:31:88:0.386:2	0/1:14,19:32:33:0.576:2	0/1:23,20:30:43:0.465:2	./.
chr21	43161877	rs3746893	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,13:30:34:0.382:2	0/1:7,8:31:15:0.533:2	0/1:3,6:30:9:0.667:2	0/1:0,51:31:51:1.00:2	0/1:27,40:30:67:0.597:2	0/1:18,34:31:52:0.654:2	./.	0/1:31,34:31:65:0.523:2	0/1:15,15:31:30:0.500:2	0/1:17,16:32:33:0.485:2	./.
chr21	43161928	rs56092943	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,17:29:34:0.500:2	./.	./.	./.	./.
chr21	43162150	rs3746894	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,27:30:57:0.474:2	0/1:20,14:30:34:0.412:2	./.	0/1:1,70:29:71:0.986:2	0/1:70,45:29:115:0.391:2	0/1:44,39:29:83:0.470:2	./.	0/1:65,70:29:135:0.519:2	0/1:44,34:29:78:0.436:2	0/1:25,28:31:53:0.528:2	./.
chr21	43164232	rs2277789	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,22:31:37:0.595:2	0/1:6,13:32:19:0.684:2	0/1:4,3:30:7:0.429:2	0/1:0,43:31:43:1.00:2	0/1:22,23:30:45:0.511:2	0/1:45,18:30:63:0.286:2	./.	0/1:46,25:31:71:0.352:2	0/1:21,38:32:59:0.644:2	0/1:29,15:31:44:0.341:2	./.
chr21	43169357	rs2838114	C	T,G	.	PASS	AC=2,2;AF=0.167,0.167;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	0/2:34:31:0.516:2	0/2:32:29:0.310:2	0/1:33:6:0.667:2	./.	./.	./.	0/1:32:60:0.483:2	./.	./.	./.	./.
chr21	43176799	rs13049286	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,29:32:51:0.569:2	0/1:17,9:33:26:0.346:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	43176832	rs2277791	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,36:32:61:0.590:2	0/1:21,15:32:36:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	43187043	rs6586238	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,6:30:12:0.500:2	0/1:34,37:28:71:0.521:2	./.	./.	0/1:16,41:28:57:0.719:2	./.	./.	./.	./.
chr21	43187167	rs6586239	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,9:32:14:0.643:2	./.	./.	0/1:2,3:33:5:0.600:2	./.	./.	./.	./.
chr21	43221483	rs3850706	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,14:30:14:1.00:2	0/1:0,7:32:7:1.00:2	./.	0/1:0,9:33:9:1.00:2	0/1:0,5:29:5:1.00:2	0/1:8,3:32:11:0.273:2	0/1:0,11:31:11:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,6:32:6:1.00:2
chr21	43221826	rs2236696	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:72,42:32:114:0.368:2	0/1:36,32:32:68:0.471:2	./.	0/1:77,69:31:146:0.473:2	0/1:93,85:31:178:0.478:2	0/1:69,80:31:149:0.537:2	0/1:0,180:31:180:1.00:2	0/1:104,82:32:186:0.441:2	0/1:1,107:32:109:0.991:2	0/1:56,68:32:124:0.548:2	0/1:74,50:31:124:0.403:2
chr21	43224683	rs2298687	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,24:29:44:0.545:2	0/1:8,7:30:15:0.467:2	./.	0/1:40,30:29:70:0.429:2	0/1:33,33:27:66:0.500:2	0/1:37,21:30:58:0.362:2	0/1:1,70:29:71:0.986:2	0/1:53,39:28:92:0.424:2	0/1:32,36:30:68:0.529:2	0/1:20,24:28:44:0.545:2	0/1:23,33:29:56:0.589:2
chr21	43236107	rs114337111	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,101:32:195:0.518:2	./.	./.
chr21	43236176	rs4075967	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:37,41:30:78:0.526:2	0/1:32,30:31:62:0.484:2	./.	./.	0/1:58,61:31:119:0.513:2	0/1:58,71:31:129:0.550:2	0/1:49,59:31:108:0.546:2	./.	./.	0/1:41,35:32:76:0.461:2	0/1:41,43:32:84:0.512:2
chr21	43239972	rs28477638	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:29:28:1.00:2	0/1:0,24:29:24:1.00:2	0/1:0,2:28:2:1.00:2	0/1:0,33:29:33:1.00:2	0/1:0,96:29:96:1.00:2	0/1:0,79:29:79:1.00:2	0/1:0,52:29:52:1.00:2	0/1:0,79:29:79:1.00:2	0/1:0,47:29:47:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,23:28:23:1.00:2
chr21	43240044	rs148946371	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,13:30:29:0.448:2	./.	./.	./.	./.	./.	./.	./.
chr21	43240446	rs73375539	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,57:30:115:0.496:2	./.	./.	./.
chr21	43254623	rs113774580	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,10:31:23:0.435:2	./.	./.	0/1:22,8:31:30:0.267:2	./.	./.	./.	./.
chr21	43256252	rs4920098	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:119,67:31:186:0.360:2	0/1:96,57:31:153:0.373:2	0/1:3,45:31:48:0.938:2	0/1:106,86:31:192:0.448:2	0/1:3,185:31:188:0.984:2	0/1:1,179:31:180:0.994:2	0/1:107,88:31:195:0.451:2	0/1:117,78:31:195:0.400:2	0/1:0,178:32:178:1.00:2	0/1:1,179:31:180:0.994:2	0/1:0,181:32:181:1.00:2
chr21	43267260	rs2277793	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,16:29:16:1.00:2	0/1:0,10:31:10:1.00:2	./.	0/1:5,7:31:12:0.583:2	0/1:0,13:28:13:1.00:2	0/1:0,17:30:17:1.00:2	0/1:6,11:30:17:0.647:2	0/1:3,12:30:15:0.800:2	0/1:0,15:30:15:1.00:2	./.	0/1:0,21:30:21:1.00:2
chr21	43281767	rs62621406	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,55:32:145:0.379:2	0/1:64,77:32:142:0.546:2	./.	0/1:65,63:32:128:0.492:2	0/1:60,53:32:113:0.469:2
chr21	43298846	rs143393748	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:30:7:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr21	43319180	rs9981024	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,12:31:45:0.267:2	./.	./.	./.	./.
chr21	43319214	rs9985096	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,13:31:56:0.232:2	./.	./.	./.	./.
chr21	43319424	rs9974123	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,13:30:43:0.302:2	./.	./.	./.	./.
chr21	43327117	rs2277795	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:46,38:29:84:0.452:2	0/1:27,26:31:53:0.491:2	0/1:2,6:27:8:0.750:2	./.	0/1:55,61:29:116:0.526:2	0/1:48,64:29:112:0.571:2	./.	./.	./.	./.	0/1:50,42:30:92:0.457:2
chr21	43327793	rs3746904	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,35:32:35:1.00:2	0/1:1,17:32:18:0.944:2	./.	./.	./.	./.	./.	./.	0/1:15,17:32:32:0.531:2	0/1:15,17:32:32:0.531:2	0/1:0,30:33:30:1.00:2
chr21	43327856	rs3746906	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:34:11:1.00:2	0/1:0,91:33:91:1.00:2	0/1:0,119:32:119:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,107:32:107:1.00:2	0/1:0,130:32:130:1.00:2	0/1:42,53:33:95:0.558:2	0/1:44,43:33:87:0.494:2	./.
chr21	43329572	rs61735800	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,30:31:56:0.536:2	0/1:16,11:30:27:0.407:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,19:29:45:0.422:2
chr21	43329614	rs370072144	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,23:32:53:0.434:2	./.
chr21	43338302	rs2839421	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,17:34:49:0.347:2	0/1:18,12:32:30:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	43338328	rs2839422	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,14:32:34:0.412:2	0/1:14,7:32:21:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	43413553	rs871546	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,7:32:22:0.318:2	./.	./.	./.	./.	./.	./.	./.	0/1:111,81:32:192:0.422:2
chr21	43413651	rs871545	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,89:33:190:0.468:2
chr21	43413731	rs915837	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,81:32:168:0.482:2	0/1:84,57:32:141:0.404:2	0/1:14,11:32:25:0.440:2	0/1:1,167:31:168:0.994:2	0/1:0,149:32:149:1.00:2	0/1:2,151:31:153:0.987:2	0/1:0,155:32:155:1.00:2	./.	0/1:1,156:32:157:0.994:2	0/1:1,139:32:140:0.993:2	0/1:1,168:32:170:0.994:2
chr21	43504228	rs7278485	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,26:30:53:0.491:2	0/1:17,7:31:24:0.292:2	0/1:3,3:33:6:0.500:2	0/1:0,51:30:51:1.00:2	0/1:0,49:30:49:1.00:2	0/1:46,28:29:74:0.378:2	./.	0/1:0,68:29:68:1.00:2	0/1:42,16:32:58:0.276:2	./.	./.
chr21	43504328	rs377196356	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:31:97:0.041:2	./.	./.	./.	./.
chr21	43505436	rs73371577	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,25:31:64:0.391:2	./.	./.	./.	./.	./.	./.	./.
chr21	43508437	rs202122975	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,5:31:65:0.077:2	./.	./.	./.	./.	./.	./.
chr21	43510427	rs67055914	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,14:29:36:0.389:2	./.	./.	0/1:103,66:29:169:0.391:2	./.	0/1:100,84:30:184:0.457:2	0/1:100,78:31:178:0.438:2	./.	./.
chr21	43510437	rs17114359	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,14:32:37:0.378:2	./.	./.	0/1:109,70:33:179:0.391:2	./.	0/1:95,81:32:177:0.460:2	0/1:97,77:33:174:0.443:2	./.	./.
chr21	43510514	rs2839464	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,29:31:76:0.382:2	0/1:23,29:31:52:0.558:2	./.	./.	./.	0/1:45,52:31:97:0.536:2	./.	0/1:55,58:31:113:0.513:2	./.	0/1:38,38:32:76:0.500:2	0/1:44,35:31:79:0.443:2
chr21	43522349	rs220109	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,53:30:53:1.00:2	0/1:2,22:30:24:0.917:2	0/1:0,6:30:6:1.00:2	./.	0/1:16,12:30:28:0.429:2	0/1:28,43:29:71:0.606:2	0/1:1,47:30:48:0.979:2	0/1:29,35:30:64:0.547:2	0/1:1,40:29:41:0.976:2	0/1:23,26:30:50:0.531:2	0/1:26,34:30:60:0.567:2
chr21	43523854	rs12482506	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,7:32:15:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.
chr21	43523941	rs220111	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:3,180:32:183:0.984:2	0/1:0,118:32:118:1.00:2	0/1:23,17:31:40:0.425:2	./.	0/1:106,92:31:198:0.465:2	./.	0/1:3,191:32:194:0.985:2	./.	0/1:94,92:33:186:0.495:2	0/1:94,87:32:181:0.481:2	0/1:90,85:31:175:0.486:2
chr21	43523972	rs11701371	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,21:30:41:0.512:2	./.	./.	0/1:97,88:29:185:0.476:2	./.	0/1:106,79:30:185:0.427:2	0/1:96,92:30:188:0.489:2	./.	./.
chr21	43531008	rs220126	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,64:29:65:0.985:2	0/1:0,28:30:28:1.00:2	0/1:0,6:29:6:1.00:2	0/1:2,73:30:75:0.973:2	0/1:1,70:30:71:0.986:2	0/1:44,39:30:83:0.470:2	0/1:0,101:29:101:1.00:2	0/1:61,43:29:104:0.413:2	0/1:0,78:30:78:1.00:2	0/1:33,27:29:60:0.450:2	0/1:31,29:29:60:0.483:2
chr21	43531403	rs220127	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,3:29:3:1.00:2	0/1:0,3:29:3:1.00:2	./.	0/1:0,3:32:3:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,3:33:3:1.00:2	./.	0/1:0,2:33:2:1.00:2
chr21	43531553	rs220128	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,29:33:29:1.00:2	0/1:0,19:32:19:1.00:2	./.	0/1:0,27:32:27:1.00:2	0/1:0,24:33:24:1.00:2	./.	0/1:1,36:33:38:0.973:2	./.	0/1:13,19:33:32:0.594:2	0/1:15,11:33:26:0.423:2	0/1:19,17:31:36:0.472:2
chr21	43531632	rs220129	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:32:37:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,37:33:37:1.00:2	0/1:0,14:31:14:1.00:2	0/1:21,41:31:62:0.661:2	0/1:1,37:31:38:0.974:2	0/1:33,37:31:70:0.529:2	0/1:0,44:32:44:1.00:2	0/1:17,18:32:35:0.514:2	0/1:14,24:32:38:0.632:2
chr21	43539287	rs118104890	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,68:31:157:0.433:2	./.	0/1:101,74:31:175:0.423:2	./.	./.	./.	./.	./.
chr21	43539293	rs220146	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,74:32:169:0.438:2	./.	0/1:102,81:31:183:0.443:2	./.	0/1:114,83:31:197:0.421:2	./.	./.	./.
chr21	43546509	rs111996953	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,84:32:151:0.556:2	./.	0/1:59,49:32:108:0.454:2	0/1:45,34:31:79:0.430:2	./.
chr21	43547788	rs220158	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:31:65:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,79:31:79:1.00:2	0/1:31,43:31:74:0.581:2	0/1:0,56:30:56:1.00:2	0/1:0,51:31:51:1.00:2	0/1:1,67:31:68:0.985:2	0/1:40,26:33:66:0.394:2	0/1:0,53:31:53:1.00:2	0/1:0,69:31:69:1.00:2
chr21	43547810	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,40:32:83:0.482:2	0/1:19,17:31:36:0.472:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	43547873	rs220159	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,9:30:11:0.818:2	0/1:71,65:31:136:0.478:2	./.	0/1:77,77:30:154:0.500:2	0/1:85,58:30:143:0.406:2	./.	0/1:89,96:31:185:0.519:2	0/1:57,44:30:101:0.436:2	./.
chr21	43557559	rs3819141	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,4:30:78:0.051:2	./.	./.	0/1:95,92:31:188:0.492:2	0/1:86,74:31:160:0.463:2	0/1:2,184:31:186:0.989:2	0/1:83,107:32:190:0.563:2	0/1:0,172:32:172:1.00:2	0/1:57,63:33:120:0.525:2	./.
chr21	43557698	rs3819142	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,56:33:109:0.514:2	0/1:67,56:32:123:0.455:2	./.	0/1:57,61:33:118:0.517:2	./.	./.
chr21	43640169	rs4148100	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,24:31:59:0.407:2	./.	./.
chr21	43645876	rs141619254	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,38:32:73:0.521:2	./.	./.	./.	./.	./.	./.
chr21	43676586	rs7281684	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,6:31:14:0.429:2	0/1:72,67:30:139:0.482:2	0/1:82,64:31:146:0.438:2	0/1:53,56:30:109:0.514:2	./.	./.	0/1:57,43:31:100:0.430:2	./.	0/1:75,81:31:156:0.519:2
chr21	43679438	rs915841	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,5:29:12:0.417:2	0/1:55,44:30:99:0.444:2	0/1:48,34:30:82:0.415:2	0/1:43,24:29:67:0.358:2	./.	./.	0/1:35,34:30:69:0.493:2	./.	0/1:54,42:30:96:0.438:2
chr21	43679513	rs915842	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,6:33:15:0.400:2	0/1:60,52:32:112:0.464:2	0/1:62,37:32:99:0.374:2	0/1:64,41:31:105:0.390:2	./.	./.	0/1:52,45:33:97:0.464:2	./.	0/1:58,63:33:121:0.521:2
chr21	43679554	rs915843	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,5:32:15:0.333:2	0/1:53,47:32:100:0.470:2	0/1:55,45:31:100:0.450:2	0/1:63,45:32:108:0.417:2	./.	./.	0/1:54,45:34:99:0.455:2	./.	0/1:56,52:32:108:0.481:2
chr21	43696999	rs56145149	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:51,39:31:90:0.433:2	0/1:37,34:32:71:0.479:2	./.	./.	./.	./.	0/1:75,96:32:171:0.561:2	./.	./.	./.	0/1:61,53:33:114:0.465:2
chr21	43710234	rs150141603	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,5:31:166:0.030:2	./.	./.	./.	./.
chr21	43710279	rs138421137	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,56:31:136:0.412:2	./.	./.	./.	./.
chr21	43786512	rs225358	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:30:28:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,40:30:40:1.00:2	0/1:1,49:30:50:0.980:2	0/1:0,45:30:45:1.00:2	0/1:22,16:31:38:0.421:2	0/1:1,61:30:62:0.984:2	0/1:0,58:31:58:1.00:2	0/1:20,19:31:39:0.487:2	0/1:16,16:32:32:0.500:2
chr21	43786532	rs117389225	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:31:8:0.500:2	./.	./.	./.	./.	./.	0/1:29,50:31:79:0.633:2	./.	./.
chr21	43786606	rs2156310	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,21:26:54:0.389:2
chr21	43792869	rs13047838	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,45:30:91:0.495:2	./.	./.	./.	./.	0/1:46,51:32:97:0.526:2	./.	0/1:42,66:32:108:0.611:2
chr21	43796781	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,4:31:32:0.125:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	43800299	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:31:63:0.063:2	./.	./.	./.	./.
chr21	43803167	rs2839500	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,25:29:60:0.417:2	./.	./.
chr21	43804105	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,4:31:35:0.114:2	./.	./.	./.	./.	./.	./.
chr21	43805637	rs2839501	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,8:29:11:0.727:2	0/1:34,38:30:72:0.528:2	./.	./.	./.	./.	0/1:31,21:31:52:0.404:2	./.	0/1:0,43:29:43:1.00:2
chr21	43808530	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,4:29:93:0.043:2	./.	./.	./.	./.	./.	./.
chr21	43808627	rs35227181	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,60:30:104:0.577:2	./.	./.	./.	0/1:28,36:32:64:0.563:2	./.	./.
chr21	43824106	rs2277798	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,6:31:11:0.545:2	0/1:0,97:32:97:1.00:2	0/1:71,59:31:130:0.454:2	./.	0/1:2,61:31:63:0.968:2	0/1:63,44:32:107:0.411:2	0/1:0,92:31:92:1.00:2	0/1:0,41:31:41:1.00:2	0/1:29,38:30:67:0.567:2
chr21	43824123	rs2277799	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,39:32:89:0.438:2	0/1:54,52:31:106:0.491:2	./.	0/1:27,17:30:44:0.386:2	0/1:50,43:33:93:0.462:2	0/1:42,33:30:76:0.440:2	0/1:22,17:31:39:0.436:2	./.
chr21	43852232	rs13052676	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:34,35:30:69:0.507:2	0/1:29,28:31:57:0.491:2	0/1:6,4:30:11:0.400:2	./.	./.	0/1:56,63:30:119:0.529:2	0/1:84,106:30:191:0.558:2	0/1:82,86:30:168:0.512:2	0/1:46,47:30:94:0.505:2	./.	./.
chr21	43854985	rs17114925	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,23:32:43:0.535:2	./.	0/1:29,25:32:54:0.463:2	./.	./.	./.
chr21	43863453	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:32:93:0.043:2	./.	./.	./.
chr21	43863521	rs868092	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:20,19:30:39:0.487:2	0/1:15,4:32:19:0.211:2	./.	0/1:0,52:30:52:1.00:2	0/1:33,29:30:62:0.468:2	0/1:34,27:30:61:0.443:2	0/1:41,37:30:78:0.474:2	0/1:1,55:31:56:0.982:2	0/1:27,19:33:46:0.413:2	0/1:0,31:31:31:1.00:2	0/1:0,41:29:41:1.00:2
chr21	43896143	rs117385282	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,25:32:57:0.439:2	0/1:16,23:32:39:0.590:2	0/1:21,44:32:65:0.677:2	./.	./.	./.	./.	./.
chr21	43896152	rs151158140	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,21:33:37:0.568:2	./.	./.
chr21	43897509	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:32:145:0.028:2	./.	./.	./.	./.
chr21	43905887	rs2839536	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,96:33:98:0.980:2	./.	./.	0/1:72,59:33:132:0.450:2	0/1:48,53:32:101:0.525:2	0/1:0,75:34:75:1.00:2	./.	0/1:0,82:33:82:1.00:2
chr21	43955611	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:31:168:0.024:2	./.	./.
chr21	43974226	rs2839550	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,11:32:16:0.688:2	./.	./.	./.	0/1:0,16:31:16:1.00:2	./.
chr21	43979127	rs118032072	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,16:32:40:0.400:2	./.
chr21	43982230	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:34:176:0.023:2	./.	./.
chr21	43985955	rs228104	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,27:32:66:0.409:2	0/1:11,20:31:31:0.645:2	0/1:3,3:32:6:0.500:2	0/1:1,95:31:96:0.990:2	0/1:60,54:31:114:0.474:2	0/1:0,76:31:76:1.00:2	0/1:0,113:32:113:1.00:2	0/1:1,112:31:113:0.991:2	0/1:0,85:32:85:1.00:2	0/1:0,72:32:72:1.00:2	0/1:2,49:32:51:0.961:2
chr21	43985958	rs117821416	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,38:33:66:0.576:2	0/1:23,11:33:34:0.324:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	44151970	rs145934566	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,29:34:57:0.509:2	0/1:20,15:33:35:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	44180443	rs13047953	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,13:32:14:0.929:2	0/1:0,12:31:12:1.00:2	0/1:0,4:29:4:1.00:2	0/1:18,13:31:31:0.419:2	0/1:11,11:31:22:0.500:2	0/1:5,19:31:24:0.792:2	0/1:0,21:31:21:1.00:2	./.	./.	0/1:7,9:32:16:0.563:2	0/1:3,6:31:9:0.667:2
chr21	44189166	rs1045382	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,93:31:94:0.989:2	0/1:107,65:29:172:0.378:2	./.	./.	0/1:113,65:29:178:0.365:2	0/1:91,70:31:162:0.435:2	0/1:86,58:30:145:0.403:2	0/1:64,66:30:130:0.508:2
chr21	44189172	rs3087994	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,97:32:98:0.990:2	0/1:113,68:32:181:0.376:2	./.	./.	0/1:110,66:32:176:0.375:2	0/1:92,76:32:168:0.452:2	0/1:87,63:32:150:0.420:2	0/1:62,66:32:128:0.516:2
chr21	44195374	rs9637296	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,49:31:112:0.438:2	./.	0/1:68,36:30:104:0.346:2	0/1:57,50:32:107:0.467:2	0/1:64,66:32:130:0.508:2	0/1:62,68:32:130:0.523:2	0/1:61,29:32:90:0.322:2	0/1:54,42:32:96:0.438:2
chr21	44270229	rs6586250	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,12:30:32:0.375:2	0/1:15,7:31:22:0.318:2	./.	./.	0/1:14,14:33:28:0.500:2	0/1:7,11:32:18:0.611:2	0/1:14,22:32:36:0.611:2
chr21	44273858	rs15736	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,11:31:23:0.478:2	0/1:18,18:29:36:0.500:2	0/1:15,12:30:27:0.444:2	./.	./.	0/1:10,9:32:19:0.474:2	0/1:6,7:32:13:0.538:2	0/1:0,16:30:16:1.00:2
chr21	44279848	rs7278765	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,18:32:48:0.383:2	./.	./.	0/1:20,15:33:35:0.429:2	0/1:16,7:31:23:0.304:2	0/1:23,12:30:35:0.343:2
chr21	44283574	rs11911090	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,63:30:137:0.460:2	./.	./.	./.	./.	./.	./.	./.
chr21	44293744	rs2248490	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,24:32:56:0.429:2	0/1:21,30:31:51:0.588:2	./.	0/1:48,31:31:79:0.392:2	0/1:44,37:31:81:0.457:2	0/1:0,86:32:86:1.00:2	./.	0/1:54,29:31:83:0.349:2	0/1:46,51:33:97:0.526:2	0/1:28,45:32:73:0.616:2	0/1:1,106:32:108:0.991:2
chr21	44323461	rs4148972	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,25:32:55:0.455:2	./.	./.	./.
chr21	44323590	rs4148973	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,20:29:48:0.417:2	0/1:18,25:30:43:0.581:2	./.	0/1:0,69:29:69:1.00:2	0/1:38,33:29:71:0.465:2	0/1:0,59:29:59:1.00:2	./.	0/1:33,49:29:82:0.598:2	0/1:20,32:29:52:0.615:2	0/1:24,28:30:52:0.538:2	0/1:3,56:30:59:0.949:2
chr21	44323720	rs4148974	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,4:31:14:0.286:2	0/1:4,5:32:9:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	44324356	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:33:122:0.033:2	./.	./.	./.	./.
chr21	44324365	rs10595	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,20:31:53:0.377:2	0/1:23,13:32:36:0.361:2	./.	0/1:0,101:30:101:1.00:2	0/1:50,58:30:108:0.537:2	0/1:1,133:30:134:0.993:2	./.	0/1:60,65:29:125:0.520:2	0/1:45,54:31:100:0.545:2	0/1:24,40:31:64:0.625:2	0/1:0,92:30:92:1.00:2
chr21	44430325	rs234781	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:30:3:1.00:2	0/1:0,10:27:10:1.00:2	./.	0/1:0,7:27:7:1.00:2	0/1:0,12:27:12:1.00:2	0/1:0,14:28:14:1.00:2	0/1:6,7:28:13:0.538:2	0/1:0,12:29:12:1.00:2
chr21	44475876	rs35307078	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,40:29:91:0.440:2	./.	./.	./.	0/1:67,45:30:112:0.402:2	./.	./.	./.
chr21	44475877	rs8132811	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,46:32:89:0.517:2	./.	./.	./.	./.	./.	./.	./.
chr21	44475953	rs760124	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,27:28:55:0.491:2	./.	./.
chr21	44480616	rs1801181	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:27:4:1.00:2	./.	0/1:14,9:31:23:0.391:2	./.	0/1:0,28:32:28:1.00:2	0/1:3,6:32:9:0.667:2	./.	0/1:5,3:33:8:0.375:2	./.
chr21	44485350	rs234706	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,73:31:73:1.00:2	./.	./.	./.	0/1:53,30:31:83:0.361:2	0/1:41,29:32:70:0.414:2	./.	./.
chr21	44513243	rs200044775	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:29,6:31:35:0.171:2	./.	./.	./.	0/1:46,5:31:51:0.098:2	0/1:28,4:31:32:0.125:2	0/1:51,16:30:67:0.239:2	0/1:42,8:31:50:0.160:2	./.	0/1:19,3:31:22:0.136:2	0/1:23,5:31:28:0.179:2
chr21	44579848	rs56218428	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,10:29:27:0.370:2	0/1:6,8:31:14:0.571:2	./.	./.	./.	0/1:1,31:28:32:0.969:2	./.	0/1:11,7:31:18:0.389:2	./.	./.	0/1:7,13:29:20:0.650:2
chr21	44589215	rs872331	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,41:31:42:0.976:2	0/1:0,15:30:15:1.00:2	./.	0/1:0,52:30:52:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,53:30:53:1.00:2	0/1:21,18:31:39:0.462:2	0/1:42,19:30:61:0.311:2	./.	0/1:27,14:31:41:0.341:2	0/1:15,29:30:44:0.659:2
chr21	44589932	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,5:21:19:0.263:2	./.	0/1:24,7:25:31:0.226:2	./.	./.	./.
chr21	44837551	rs430552	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,20:30:21:0.952:2	0/1:0,6:32:6:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,25:29:25:1.00:2	0/1:1,20:29:21:0.952:2	0/1:0,20:30:20:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,17:31:17:1.00:2
chr21	44837555	rs430554	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:29:25:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,3:26:3:1.00:2	0/1:1,28:28:29:0.966:2	0/1:0,24:28:24:1.00:2	0/1:0,24:29:24:1.00:2	0/1:0,24:28:24:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,18:29:18:1.00:2
chr21	44840138	rs17004546	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,81:30:166:0.491:2	./.	./.	./.	./.	./.	./.	./.
chr21	44846016	rs3746951	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:13,17:30:30:0.567:2	0/1:2,6:31:8:0.750:2	./.	./.	0/1:24,6:32:30:0.200:2	./.	0/1:22,10:30:32:0.313:2	0/1:13,17:30:30:0.567:2	0/1:12,28:32:40:0.700:2	./.	./.
chr21	45079557	rs200774372	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,6:30:11:0.545:2	./.	./.	./.	./.	./.	./.
chr21	45092257	rs2251253	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,34:30:69:0.493:2	0/1:31,13:31:44:0.295:2	./.	0/1:48,31:29:79:0.392:2	0/1:55,40:30:95:0.421:2	0/1:43,25:30:68:0.368:2	0/1:0,92:29:92:1.00:2	0/1:20,63:30:83:0.759:2	0/1:47,28:31:75:0.373:2	0/1:0,68:30:68:1.00:2	0/1:43,33:31:76:0.434:2
chr21	45094497	rs200999744	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,6:21:36:0.167:2	./.	./.	./.	./.	0/1:28,5:20:33:0.152:2	0/1:35,8:19:43:0.186:2
chr21	45096206	rs2155722	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,23:32:58:0.397:2	0/1:20,14:32:34:0.412:2	./.	0/1:61,53:31:114:0.465:2	0/1:58,26:32:84:0.310:2	0/1:38,32:31:70:0.457:2	0/1:0,61:32:61:1.00:2	0/1:43,70:32:113:0.619:2	0/1:37,48:32:85:0.565:2	0/1:0,77:31:79:1.00:2	0/1:60,34:32:94:0.362:2
chr21	45107518	rs7279959	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:27:17:1.00:2	0/1:0,2:27:2:1.00:2	./.	0/1:0,13:27:13:1.00:2	0/1:0,6:26:6:1.00:2	0/1:0,11:28:11:1.00:2	0/1:0,11:27:11:1.00:2	0/1:0,13:28:13:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,3:28:3:1.00:2	0/1:0,7:27:7:1.00:2
chr21	45107562	rs9306160	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,4:29:23:0.174:2	0/1:4,6:30:10:0.600:2	./.	0/1:13,9:30:22:0.409:2	0/1:9,6:27:15:0.400:2	0/1:15,5:28:20:0.250:2	0/1:0,13:29:13:1.00:2	0/1:12,6:31:18:0.333:2	0/1:5,11:31:16:0.688:2	0/1:0,8:28:8:1.00:2	0/1:10,6:27:16:0.375:2
chr21	45152382	rs190069684	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,61:32:63:0.968:2	0/1:0,35:32:35:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	45152383	rs181726789	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,60:32:62:0.968:2	0/1:0,35:32:35:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	45152500	rs2276528	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:14,12:31:26:0.462:2	./.	./.	./.	./.	./.	0/1:5,4:31:9:0.444:2	./.
chr21	45161401	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,25:32:31:0.806:2	0/1:4,11:32:15:0.733:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	45168884	rs11539534	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,10:33:30:0.333:2	0/1:8,13:33:21:0.619:2	./.	./.	./.	0/1:20,21:32:41:0.512:2	./.	./.	./.	0/1:28,13:34:41:0.317:2	./.
chr21	45168923	rs61737062	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,18:30:36:0.500:2	./.	./.	./.	0/1:21,15:31:36:0.417:2	./.
chr21	45173500	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,4:30:114:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr21	45175571	rs8128639	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,58:29:114:0.509:2	0/1:104,57:30:161:0.354:2	./.	0/1:99,97:30:196:0.495:2	./.	./.	./.	0/1:34,36:30:70:0.514:2
chr21	45175626	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:30:74:0.054:2	./.
chr21	45209559	rs78489660	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,38:32:73:0.521:2	0/1:7,12:32:19:0.632:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	45212556	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2	./.
chr21	45212626	rs2073431	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,44:29:102:0.431:2	0/1:40,32:28:72:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	45215051	rs2838372	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,27:34:77:0.355:2	0/1:24,20:32:44:0.455:2	./.	./.	./.	0/1:57,63:32:120:0.525:2	./.	./.	./.	0/1:1,74:32:75:0.987:2	./.
chr21	45215052	rs117695203	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,87:31:190:0.458:2	./.	./.	./.
chr21	45215055	rs2838373	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:33,47:33:80:0.588:2	0/1:23,23:33:46:0.500:2	0/1:7,9:32:16:0.563:2	./.	./.	./.	./.	./.	0/1:83,55:34:138:0.399:2	./.	0/1:62,62:33:124:0.500:2
chr21	45217539	rs34224504	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,28:29:65:0.431:2	./.	./.
chr21	45217559	rs2838378	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,36:27:37:0.973:2	0/1:0,16:27:16:1.00:2	./.	./.	./.	0/1:24,23:27:47:0.489:2	./.	./.	0/1:22,15:28:37:0.405:2	0/1:0,53:29:53:1.00:2	0/1:16,12:27:28:0.429:2
chr21	45217929	rs2838379	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,57:28:57:1.00:2	0/1:1,40:27:41:0.976:2	0/1:9,7:27:16:0.438:2	./.	./.	./.	./.	./.	0/1:43,51:29:95:0.543:2	./.	0/1:50,28:28:78:0.359:2
chr21	45219524	rs4566449	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,58:31:58:1.00:2	0/1:0,22:32:22:1.00:2	0/1:5,6:30:11:0.545:2	./.	./.	./.	./.	./.	0/1:53,38:31:91:0.418:2	./.	0/1:55,39:31:94:0.415:2
chr21	45220483	rs915770	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:25,22:33:47:0.468:2	0/1:15,17:32:32:0.531:2	0/1:10,11:33:21:0.524:2	./.	./.	./.	./.	./.	0/1:29,36:34:65:0.554:2	./.	0/1:32,26:31:58:0.448:2
chr21	45220787	rs2329576	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:32:16:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,21:32:22:1.00:2
chr21	45389034	rs61737069	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,58:32:105:0.552:2	0/1:36,25:31:61:0.410:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	45479055	rs2838475	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:3,30:31:33:0.909:2	0/1:1,27:31:28:0.964:2	0/1:2,5:31:7:0.714:2	./.	./.	./.	./.	./.	0/1:40,21:32:61:0.344:2	./.	./.
chr21	45479416	rs368348371	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,4:29:95:0.042:2	./.	./.	./.	./.	./.	./.
chr21	45495008	rs151171662	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:30:90:0.044:2	./.	./.	./.	./.	./.
chr21	45502844	rs915877	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,66:32:145:0.455:2	0/1:85,59:32:144:0.410:2	./.	./.	./.
chr21	45503121	rs2071152	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,22:30:52:0.423:2	0/1:30,25:31:55:0.455:2	./.	./.	./.	./.
chr21	45506819	rs1131999	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,43:29:92:0.467:2	0/1:51,49:28:100:0.490:2	0/1:77,53:28:130:0.408:2	./.	./.	./.
chr21	45527291	rs11550376	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,6:32:11:0.545:2	./.	0/1:4,8:32:12:0.667:2	0/1:13,15:30:28:0.536:2	./.	./.	0/1:0,3:30:3:1.00:2
chr21	45528919	rs2020945	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:32:76:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,60:32:60:1.00:2	0/1:34,29:32:63:0.460:2	0/1:23,28:32:51:0.549:2	0/1:31,30:32:61:0.492:2	0/1:0,58:32:58:1.00:2	0/1:0,92:33:92:1.00:2	0/1:0,69:32:69:1.00:2	0/1:2,91:31:93:0.978:2
chr21	45538647	rs756553	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:33:72:1.00:2	0/1:1,56:32:57:0.982:2	0/1:0,5:31:5:1.00:2	0/1:0,90:33:90:1.00:2	0/1:46,51:33:97:0.526:2	0/1:40,55:32:95:0.579:2	0/1:55,62:32:117:0.530:2	0/1:3,100:32:103:0.971:2	0/1:0,106:34:106:1.00:2	0/1:1,83:33:84:0.988:2	0/1:0,94:32:94:1.00:2
chr21	45538725	rs756554	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:32:81:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,111:32:111:1.00:2	0/1:73,47:32:120:0.392:2	0/1:49,50:32:99:0.505:2	0/1:65,85:33:150:0.567:2	0/1:3,140:32:143:0.979:2	0/1:0,144:33:144:1.00:2	0/1:5,90:32:95:0.947:2	0/1:0,114:32:114:1.00:2
chr21	45540919	rs2071143	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,104:30:106:0.981:2	0/1:0,63:29:63:1.00:2	0/1:0,13:29:13:1.00:2	0/1:2,117:30:120:0.983:2	0/1:109,73:30:182:0.401:2	0/1:87,75:30:162:0.463:2	0/1:81,76:30:157:0.484:2	0/1:1,163:30:164:0.994:2	0/1:2,130:31:132:0.985:2	0/1:2,146:30:148:0.986:2	0/1:4,105:30:109:0.963:2
chr21	45540967	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:31:118:0.034:2	./.	./.	./.	./.
chr21	45542072	rs17856422	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,70:30:173:0.405:2	./.	./.	./.	./.	./.	./.	./.
chr21	45544594	rs2187313	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:32:56:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,111:32:111:1.00:2	0/1:101,47:32:148:0.318:2	0/1:56,55:32:111:0.495:2	0/1:82,64:33:147:0.438:2	0/1:0,118:32:118:1.00:2	0/1:0,96:33:96:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,89:31:89:1.00:2
chr21	45553596	rs968714	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:30:38:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,46:30:46:1.00:2	0/1:37,21:28:58:0.362:2	0/1:67,35:31:102:0.343:2	0/1:39,8:32:47:0.170:2	0/1:1,63:30:64:0.984:2	0/1:0,39:32:39:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,21:30:21:1.00:2
chr21	45557227	rs74418161	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,49:32:93:0.527:2	./.	./.	./.	./.	./.
chr21	45560145	rs17264865	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:32:13:0.538:2	./.	./.	./.	./.	./.	./.	./.	./.
chr21	45560939	rs116277272	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,49:30:71:0.690:2	./.	./.	./.	./.	./.
chr21	45565473	rs7676	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,101:32:101:1.00:2	0/1:2,71:32:73:0.973:2	0/1:0,12:31:12:1.00:2	0/1:0,119:32:120:1.00:2	0/1:73,37:31:110:0.336:2	0/1:73,59:32:132:0.447:2	0/1:49,49:32:98:0.500:2	0/1:3,128:32:131:0.977:2	0/1:0,112:32:112:1.00:2	0/1:0,96:32:96:1.00:2	0/1:1,139:31:140:0.993:2
chr21	45648880	rs55769116	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,13:32:23:0.565:2	0/1:6,8:31:14:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	45649494	rs7278772	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,12:32:12:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,19:30:19:1.00:2	0/1:14,11:28:26:0.440:2	0/1:0,14:30:14:1.00:2	0/1:0,17:31:17:1.00:2	0/1:10,11:31:21:0.524:2	0/1:0,6:31:6:1.00:2	0/1:0,11:30:11:1.00:2
chr21	45649499	rs9974245	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:5,6:32:11:0.545:2	./.	0/1:0,5:30:5:1.00:2	./.	0/1:0,16:31:16:1.00:2	./.	0/1:0,10:32:10:1.00:2	./.	./.	./.	./.
chr21	45649640	rs7280853	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:14,8:31:22:0.364:2	./.	./.	./.	./.	./.	./.	0/1:11,23:29:34:0.676:2	./.	0/1:6,7:29:13:0.538:2	./.
chr21	45649666	rs4511811	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,55:30:57:0.965:2	./.	./.	./.	0/1:44,29:31:73:0.397:2	0/1:21,23:30:44:0.523:2	0/1:15,12:28:27:0.444:2	0/1:0,50:31:50:1.00:2
chr21	45649778	rs4568033	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,37:29:67:0.552:2	0/1:15,20:29:35:0.571:2	0/1:1,11:30:12:0.917:2	0/1:3,104:30:107:0.972:2	0/1:1,92:30:93:0.989:2	0/1:69,58:31:127:0.457:2	0/1:1,97:30:98:0.990:2	0/1:51,60:30:111:0.541:2	0/1:58,51:31:109:0.468:2	0/1:38,36:30:74:0.486:2	0/1:0,76:29:76:1.00:2
chr21	45649848	rs13052840	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,9:33:23:0.391:2	0/1:10,6:32:16:0.375:2	0/1:1,4:33:5:0.800:2	0/1:2,36:32:38:0.947:2	0/1:0,24:30:24:1.00:2	./.	0/1:0,22:33:22:1.00:2	0/1:20,25:32:45:0.556:2	0/1:25,17:34:42:0.405:2	0/1:23,10:32:33:0.303:2	0/1:0,38:33:38:1.00:2
chr21	45656774	rs11558819	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:22,17:31:39:0.436:2	0/1:8,8:32:16:0.500:2	0/1:3,5:31:8:0.625:2	./.	0/1:33,31:31:64:0.484:2	./.	./.	0/1:45,31:32:76:0.408:2	./.	./.	./.
chr21	45670770	rs7354779	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,3:27:12:0.250:2	0/1:65,35:26:100:0.350:2	./.	0/1:74,48:28:122:0.393:2	0/1:76,58:27:134:0.433:2	0/1:73,43:26:116:0.371:2	./.	./.	./.
chr21	45705988	rs3746964	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:29:6:0.667:2	./.	./.	./.	./.	./.
chr21	45708277	rs878081	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,47:32:96:0.490:2	./.	./.	0/1:33,35:33:68:0.515:2	./.	./.	./.	0/1:25,39:31:64:0.609:2
chr21	45709568	rs1055311	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,31:31:85:0.365:2	0/1:88,65:31:153:0.425:2	./.	0/1:1,83:31:84:0.988:2	./.
chr21	45709906	rs1800520	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:33:5:0.600:2	./.	./.	0/1:37,37:31:74:0.500:2	./.	./.	./.	./.	./.
chr21	45712977	rs1800521	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,13:31:28:0.464:2	./.	0/1:17,11:34:28:0.393:2	./.	./.	./.	./.	./.
chr21	45713715	rs72650677	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,12:31:21:0.571:2	./.	./.	./.	./.	./.
chr21	45717550	rs1133779	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:31,22:29:53:0.415:2	0/1:14,17:28:31:0.548:2	./.	0/1:39,28:28:67:0.418:2	./.	0/1:39,37:28:76:0.487:2	0/1:39,22:28:61:0.361:2	./.	0/1:33,45:28:78:0.577:2	0/1:35,26:27:61:0.426:2	./.
chr21	45725715	rs9975113	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:27,37:29:64:0.578:2	0/1:8,12:27:20:0.600:2	./.	0/1:40,40:29:80:0.500:2	./.	0/1:52,41:28:93:0.441:2	./.	./.	0/1:52,41:30:93:0.441:2	0/1:22,39:29:61:0.639:2	./.
chr21	45725799	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:30:116:0.034:2	./.	./.	./.
chr21	45732008	rs140593126	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,106:31:190:0.558:2	./.	./.	./.	./.
chr21	45732116	rs1057034	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,56:29:101:0.554:2	0/1:27,26:30:53:0.491:2	0/1:2,17:28:19:0.895:2	0/1:57,72:28:129:0.558:2	0/1:0,155:27:155:1.00:2	0/1:48,83:28:131:0.634:2	0/1:0,110:28:110:1.00:2	0/1:4,138:28:142:0.972:2	0/1:59,44:29:103:0.427:2	0/1:44,45:28:89:0.506:2	0/1:19,38:29:57:0.667:2
chr21	45733867	rs1057037	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,11:31:36:0.306:2
chr21	45746067	rs144669255	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,40:33:86:0.465:2	0/1:36,20:32:56:0.357:2	./.
chr21	45750168	rs11552068	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,6:28:19:0.316:2	./.	./.	./.	./.	./.
chr21	45750346	rs2070573	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:5,4:30:9:0.444:2	0/1:2,4:32:6:0.667:2	./.	./.	./.	./.	./.	0/1:3,6:30:9:0.667:2	0/1:0,15:31:15:1.00:2	./.	./.
chr21	45750713	rs62000360	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,33:30:62:0.532:2	./.	./.	./.	./.	./.
chr21	45751822	rs2277809	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,49:30:102:0.480:2
chr21	45759012	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,4:30:26:0.154:2	./.	./.	./.	./.	./.	./.
chr21	45759019	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,4:33:29:0.138:2	./.	./.	./.	./.	./.	./.
chr21	45759045	rs11870	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,24:32:32:0.750:2	0/1:11,15:31:26:0.577:2	./.	./.	./.	0/1:0,23:31:23:1.00:2
chr21	45811343	rs1556314	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,15:33:41:0.366:2	0/1:19,17:32:36:0.472:2	./.	./.	0/1:19,19:32:38:0.500:2	./.	./.	./.
chr21	45820196	rs35288229	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,95:31:170:0.559:2	0/1:40,66:31:106:0.623:2	./.	./.	./.	0/1:34,47:31:81:0.580:2	./.
chr21	45844751	rs9978351	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:30:51:1.00:2	0/1:0,50:30:50:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,107:30:107:1.00:2	0/1:3,113:29:116:0.974:2	0/1:0,101:30:101:1.00:2	0/1:1,62:30:63:0.984:2	0/1:1,98:30:100:0.990:2	0/1:1,77:31:78:0.987:2	0/1:0,55:30:55:1.00:2	0/1:0,42:30:42:1.00:2
chr21	45877522	rs74756726	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,33:31:68:0.485:2	0/1:15,20:32:35:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	45878009	rs11702242	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,8:30:23:0.348:2	0/1:11,5:30:16:0.313:2	./.	./.	./.	0/1:11,12:30:23:0.522:2	./.	./.
chr21	45878247	rs9982752	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,4:28:8:0.500:2	./.	0/1:0,2:27:2:1.00:2	0/1:10,4:26:14:0.286:2	0/1:1,8:26:9:0.889:2	0/1:3,3:24:6:0.500:2	0/1:0,7:27:7:1.00:2	./.	0/1:0,17:28:17:1.00:2	0/1:0,3:28:3:1.00:2	0/1:0,18:25:19:1.00:2
chr21	45878637	rs3804034	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,21:32:50:0.420:2	0/1:12,9:33:21:0.429:2	0/1:0,8:32:8:1.00:2	0/1:40,24:32:64:0.375:2	0/1:0,48:31:48:1.00:2	0/1:19,7:32:26:0.269:2	0/1:0,32:31:32:1.00:2	0/1:25,20:32:45:0.444:2	0/1:0,55:33:55:1.00:2	0/1:1,28:31:29:0.966:2	0/1:0,63:31:63:1.00:2
chr21	45929181	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,11:29:30:0.367:2	./.	./.	./.	./.	./.	./.	./.	./.
chr21	45945581	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:33:183:0.022:2	./.	./.	./.
chr21	45945648	rs35028190	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,119:32:122:0.975:2	./.	./.	./.	./.	0/1:87,68:33:155:0.439:2	./.
chr21	45949757	rs146025689	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,9:32:28:0.321:2
chr21	45959195	rs233316	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:33:3:1.00:2	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.
chr21	45959256	rs143105755	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,7:32:10:0.700:2	./.	./.	./.	./.	./.	./.	./.
chr21	45959312	rs233317	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,35:30:35:1.00:2	0/1:1,23:32:24:0.958:2	0/1:0,5:32:5:1.00:2	0/1:2,23:30:25:0.920:2	0/1:5,17:31:22:0.773:2	0/1:0,30:31:30:1.00:2	0/1:1,21:31:22:0.955:2	0/1:0,25:29:25:1.00:2	0/1:1,35:32:36:0.972:2	0/1:2,15:31:17:0.882:2	0/1:0,12:31:13:1.00:2
chr21	45959317	rs113063562	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,3:31:32:0.094:2	./.	./.	./.	./.	./.	./.	./.
chr21	45959386	rs233318	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:31:48:1.00:2	0/1:1,29:32:30:0.967:2	0/1:6,6:31:12:0.500:2	0/1:37,28:31:65:0.431:2	0/1:17,14:31:31:0.452:2	0/1:4,64:31:68:0.941:2	0/1:1,34:31:35:0.971:2	0/1:11,43:31:54:0.796:2	0/1:24,14:32:38:0.368:2	0/1:19,28:32:47:0.596:2	0/1:1,34:32:35:0.971:2
chr21	45959482	rs200124107	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,54:27:102:0.535:2	./.	./.	./.	./.
chr21	45959557	rs62218857	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,112:30:113:0.991:2	0/1:1,72:30:73:0.986:2	0/1:26,20:31:46:0.435:2	0/1:103,61:29:165:0.372:2	0/1:118,58:29:176:0.330:2	0/1:2,139:30:141:0.986:2	0/1:2,109:29:111:0.982:2	0/1:1,112:30:113:0.991:2	0/1:105,45:30:150:0.300:2	0/1:108,52:31:160:0.325:2	0/1:0,116:30:116:1.00:2
chr21	45959558	rs62218858	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,111:32:112:0.991:2	0/1:1,72:32:73:0.986:2	0/1:26,20:32:46:0.435:2	0/1:107,62:31:169:0.367:2	0/1:122,58:31:180:0.322:2	0/1:2,139:32:141:0.986:2	0/1:2,108:31:110:0.982:2	0/1:0,113:31:113:1.00:2	0/1:105,45:32:150:0.300:2	0/1:107,52:32:160:0.327:2	0/1:0,116:31:116:1.00:2
chr21	45959559	rs62218859	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,111:30:112:0.991:2	0/1:1,71:30:73:0.986:2	0/1:26,20:31:46:0.435:2	0/1:110,62:30:172:0.360:2	0/1:124,57:30:181:0.315:2	0/1:2,139:30:141:0.986:2	0/1:2,108:30:111:0.982:2	0/1:0,113:30:113:1.00:2	0/1:108,44:31:152:0.289:2	0/1:107,52:30:159:0.327:2	0/1:0,116:30:116:1.00:2
chr21	45959733	rs233319	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,71:32:75:0.947:2	0/1:3,49:32:52:0.942:2	0/1:10,13:31:23:0.565:2	0/1:52,48:31:100:0.480:2	0/1:42,39:30:81:0.481:2	0/1:2,103:30:105:0.981:2	0/1:6,66:31:72:0.917:2	0/1:3,77:31:81:0.963:2	0/1:40,45:32:85:0.529:2	0/1:50,33:32:83:0.398:2	0/1:1,48:31:49:0.980:2
chr21	45959918	rs233320	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,19:32:19:1.00:2	0/1:1,7:32:8:0.875:2	./.	0/1:3,7:32:10:0.700:2	0/1:1,4:31:5:0.800:2	0/1:0,9:31:9:1.00:2	0/1:0,3:30:3:1.00:2	0/1:1,6:28:7:0.857:2	0/1:3,4:35:7:0.571:2	0/1:2,3:25:5:0.600:2	0/1:0,5:33:5:1.00:2
chr21	45960013	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:127,4:32:131:0.031:2	./.	./.	./.	./.	./.	./.
chr21	45970718	rs233238	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,32:31:68:0.471:2	0/1:19,24:31:43:0.558:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,21:32:52:0.404:2
chr21	45970812	rs2329834	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,44:31:81:0.543:2	0/1:23,43:32:66:0.652:2	0/1:4,5:33:9:0.556:2	0/1:73,60:32:133:0.451:2	0/1:50,53:32:103:0.515:2	0/1:74,73:31:147:0.497:2	0/1:3,88:31:91:0.967:2	0/1:1,115:31:116:0.991:2	0/1:49,48:32:97:0.495:2	0/1:79,43:31:122:0.352:2	0/1:34,42:31:76:0.553:2
chr21	45970920	rs150498297	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,92:31:182:0.505:2	./.	./.	./.
chr21	45970960	rs374542929	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:31:162:0.025:2	./.	./.	./.	./.	./.
chr21	45970983	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:31:70:0.057:2
chr21	45970992	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,5:29:138:0.036:2	./.	./.	./.	./.	./.
chr21	45970993	rs233239	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:49,48:32:97:0.495:2	0/1:38,34:32:72:0.472:2	0/1:12,8:32:20:0.400:2	./.	./.	./.	./.	./.	./.	./.	0/1:41,23:30:64:0.359:2
chr21	45971018	rs478947	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:52,45:32:97:0.464:2	0/1:30,32:31:62:0.516:2	0/1:11,4:32:15:0.267:2	./.	./.	./.	./.	./.	./.	./.	0/1:29,16:30:45:0.356:2
chr21	45971023	rs478967	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:52,41:30:93:0.441:2	0/1:28,33:29:61:0.541:2	0/1:11,4:30:15:0.267:2	./.	./.	./.	./.	./.	./.	./.	0/1:24,16:30:40:0.400:2
chr21	45971076	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,3:31:13:0.231:2	./.	./.	./.	./.	./.	./.
chr21	45971081	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,4:32:36:0.111:2	./.	0/1:30,9:33:39:0.231:2	./.	./.	./.	./.	./.
chr21	45971109	rs200984587	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,3:32:26:0.115:2	./.	./.	0/1:22,9:30:31:0.290:2	0/1:8,4:31:12:0.333:2	0/1:13,16:31:29:0.552:2	0/1:4,3:32:7:0.429:2	0/1:14,3:32:17:0.176:2	./.	0/1:7,4:30:11:0.364:2	0/1:8,3:33:11:0.273:2
chr21	45971152	rs199607801	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,15:31:28:0.536:2	0/1:8,6:30:14:0.429:2	0/1:32,5:30:37:0.135:2	0/1:2,6:31:8:0.750:2	./.	./.	./.	0/1:4,6:31:10:0.600:2
chr21	45971162	rs199922020	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:8,6:32:14:0.429:2	./.	./.	0/1:12,12:32:24:0.500:2	0/1:8,5:31:13:0.385:2	0/1:19,14:31:33:0.424:2	0/1:1,6:32:7:0.857:2	0/1:10,6:32:16:0.375:2	./.	./.	0/1:4,5:31:9:0.556:2
chr21	45971299	rs233240	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,25:30:58:0.431:2	0/1:10,13:31:23:0.565:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,11:30:24:0.458:2
chr21	45971357	rs456478	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,35:30:65:0.538:2	./.	./.	./.
chr21	45971376	rs375670763	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,3:33:28:0.111:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	45971380	rs6147532	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,3:31:28:0.107:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	45978090	rs233252	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:28:28:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,15:29:15:1.00:2	0/1:23,28:29:51:0.549:2	0/1:2,29:29:31:0.935:2	0/1:0,28:30:28:1.00:2	0/1:0,37:29:38:1.00:2	0/1:0,29:28:29:1.00:2	0/1:0,10:29:10:1.00:2
chr21	45978175	rs190980029	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,9:31:76:0.118:2	0/1:33,5:31:38:0.132:2	./.	./.	./.	0/1:72,4:32:76:0.053:2	0/1:17,3:32:20:0.150:2	./.	0/1:56,6:29:62:0.097:2	./.	0/1:28,6:32:34:0.176:2
chr21	45978199	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,4:32:39:0.103:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	45978326	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,3:33:44:0.068:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	45978338	rs367805477	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:26:38:0.105:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	45978488	rs12483390	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,8:31:14:0.571:2	0/1:0,2:31:2:1.00:2	./.	./.	./.	0/1:5,4:31:9:0.444:2	./.	0/1:5,7:29:12:0.583:2	0/1:4,3:32:7:0.429:2	./.	0/1:2,2:33:4:0.500:2
chr21	45978499	rs377549	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,18:31:18:1.00:2	0/1:0,4:27:4:1.00:2	./.	0/1:1,11:33:12:0.917:2	0/1:0,8:31:8:1.00:2	0/1:10,5:29:15:0.333:2	0/1:2,5:30:7:0.714:2	0/1:0,17:33:17:1.00:2	0/1:0,9:32:9:1.00:2	0/1:1,7:30:8:0.875:2	0/1:0,5:32:5:1.00:2
chr21	45978503	rs435424	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:29:17:1.00:2	0/1:0,5:29:5:1.00:2	./.	0/1:1,12:29:13:0.923:2	0/1:0,13:31:13:1.00:2	0/1:11,4:31:15:0.267:2	0/1:2,6:27:8:0.750:2	0/1:0,19:31:19:1.00:2	0/1:0,11:30:11:1.00:2	0/1:1,7:29:8:0.875:2	0/1:0,6:32:6:1.00:2
chr21	45978587	rs448908	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,27:31:60:0.450:2	0/1:19,18:32:37:0.486:2	0/1:3,7:32:10:0.700:2	0/1:45,30:31:75:0.400:2	0/1:62,54:31:116:0.466:2	./.	./.	./.	0/1:47,45:32:92:0.489:2	0/1:39,31:32:70:0.443:2	0/1:19,24:31:43:0.558:2
chr21	45978591	rs79221051	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,33:31:59:0.559:2	0/1:18,18:31:36:0.500:2	./.	./.	./.	0/1:55,44:31:99:0.444:2	0/1:54,25:31:79:0.316:2	0/1:62,41:31:103:0.398:2	./.	./.	./.
chr21	45978592	rs452472	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,27:27:60:0.450:2	0/1:18,18:31:36:0.500:2	0/1:4,6:29:10:0.600:2	0/1:46,31:31:77:0.403:2	0/1:64,56:29:120:0.467:2	./.	./.	./.	0/1:47,45:30:92:0.489:2	0/1:39,32:31:71:0.451:2	0/1:19,24:30:43:0.558:2
chr21	45987821	rs150016894	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,43:32:82:0.524:2	./.	./.
chr21	45993746	rs200779717	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,26:29:48:0.542:2	./.	./.	./.	./.	0/1:10,15:31:25:0.600:2	./.	./.
chr21	45993819	rs233285	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,9:30:11:0.818:2	0/1:0,6:33:6:1.00:2	./.	0/1:4,6:32:10:0.600:2	0/1:2,4:33:6:0.667:2	0/1:15,3:31:18:0.167:2	./.	0/1:0,7:32:7:1.00:2	0/1:1,8:32:9:0.889:2	0/1:1,4:33:5:0.800:2	0/1:0,2:32:2:1.00:2
chr21	45993841	rs78682408	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,15:28:26:0.577:2	./.	./.	./.	./.	./.
chr21	45993851	rs201895065	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:31:10:0.300:2	./.	./.	./.	./.	./.	./.	./.
chr21	45994006	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:111,6:31:117:0.051:2	./.	0/1:173,7:26:181:0.039:2	./.	./.	./.	0/1:184,8:29:192:0.042:2	0/1:172,10:31:182:0.055:2	./.	./.
chr21	45994016	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,5:31:189:0.026:2	./.	./.	./.
chr21	45994110	rs201015288	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:160,25:30:185:0.135:2	0/1:175,13:25:189:0.069:2	0/1:174,11:31:185:0.059:2	0/1:140,52:30:192:0.271:2	0/1:185,10:29:195:0.051:2	0/1:150,26:32:176:0.148:2	0/1:154,34:30:188:0.181:2	0/1:164,21:30:185:0.114:2
chr21	45994187	rs383474	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,50:29:152:0.331:2	0/1:111,71:30:182:0.390:2	0/1:41,32:30:73:0.438:2	0/1:105,78:30:183:0.426:2	0/1:91,94:30:185:0.508:2	0/1:147,39:29:186:0.210:2	0/1:74,110:30:185:0.598:2	0/1:83,105:29:188:0.559:2	0/1:121,56:30:177:0.316:2	0/1:119,69:30:188:0.367:2	0/1:78,73:30:151:0.483:2
chr21	45994237	rs202043408	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:137,7:31:144:0.049:2	./.	0/1:131,5:33:138:0.037:2	./.	./.	0/1:109,9:29:118:0.076:2	0/1:123,11:31:134:0.082:2	./.
chr21	45994250	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,5:26:114:0.044:2	./.
chr21	45994256	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,5:31:98:0.051:2	./.
chr21	45994278	rs62220884	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:91,19:30:110:0.173:2	0/1:49,22:31:71:0.310:2	0/1:22,3:31:25:0.120:2	0/1:72,32:30:104:0.308:2	0/1:54,25:30:79:0.316:2	0/1:84,11:28:95:0.116:2	0/1:38,14:30:52:0.269:2	0/1:59,27:29:86:0.314:2	0/1:54,18:30:72:0.250:2	0/1:56,16:31:72:0.222:2	0/1:31,13:30:44:0.295:2
chr21	45994302	rs200473430	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:31:50:0.082:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	45994488	rs396912	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,83:32:150:0.553:2	./.	./.	./.	./.	./.
chr21	45994604	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,4:31:113:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr21	45994614	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,4:32:114:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr21	45994841	rs7276273	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,7:32:17:0.412:2	./.	./.	./.	./.	./.
chr21	45994843	rs12626886	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,6:30:18:0.333:2	./.	0/1:6,5:33:11:0.455:2
chr21	45995141	rs457322	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,36:30:81:0.444:2	0/1:68,4:31:72:0.056:2	./.	./.	./.	./.
chr21	45995154	rs12627028	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,41:32:83:0.494:2	0/1:42,61:32:103:0.592:2	./.	0/1:3,59:32:62:0.952:2	0/1:49,37:32:86:0.430:2	0/1:33,38:33:71:0.535:2	0/1:21,32:32:53:0.604:2	0/1:24,41:33:65:0.631:2
chr21	45999716	rs7509970	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:6,6:31:12:0.500:2	./.	./.	./.	0/1:12,10:28:22:0.455:2	./.	./.	./.	./.	./.
chr21	45999753	rs464424	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,4:30:25:0.160:2	0/1:8,8:30:16:0.500:2	./.	./.	./.	0/1:25,14:31:39:0.359:2	./.	./.	./.	./.	./.
chr21	45999908	rs380585	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,65:32:130:0.500:2	./.	./.	./.	./.	./.
chr21	46000188	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,7:31:70:0.100:2	./.	0/1:69,6:29:75:0.080:2	./.	./.	./.
chr21	46000292	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,6:31:11:0.545:2	./.	./.	./.	./.
chr21	46000398	rs2020221	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,32:29:64:0.500:2	0/1:32,32:30:64:0.500:2	./.	0/1:1,56:30:58:0.982:2	./.	0/1:17,20:30:37:0.541:2	0/1:31,23:29:55:0.426:2	0/1:16,22:28:38:0.579:2
chr21	46011298	rs113437209	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,26:31:138:0.188:2	./.	./.	0/1:79,4:30:83:0.048:2	0/1:130,40:31:170:0.235:2	./.	./.	0/1:76,5:30:82:0.062:2
chr21	46011397	rs1699041	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:97,10:26:107:0.093:2	./.	./.	0/1:119,8:28:127:0.063:2	0/1:97,5:28:102:0.049:2	0/1:133,7:25:140:0.050:2	./.	0/1:131,7:29:138:0.051:2	./.	0/1:87,7:26:94:0.074:2	./.
chr21	46011400	rs371252868	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:101,10:31:111:0.090:2	./.	./.	0/1:120,8:30:128:0.063:2	0/1:98,5:31:103:0.049:2	./.	./.	0/1:140,6:32:146:0.041:2	./.	0/1:88,7:30:95:0.074:2	./.
chr21	46011468	rs465279	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,76:31:88:0.864:2	0/1:4,50:32:54:0.926:2	0/1:6,7:30:13:0.538:2	0/1:60,48:30:108:0.444:2	0/1:8,100:30:108:0.926:2	./.	0/1:2,97:31:99:0.980:2	0/1:3,139:30:142:0.979:2	0/1:34,48:32:82:0.585:2	0/1:50,34:30:84:0.405:2	0/1:9,30:29:39:0.769:2
chr21	46011483	rs201230688	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:29:45:0.089:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	46011496	rs201123949	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,8:31:94:0.086:2	./.	./.	./.	./.	0/1:32,3:32:36:0.086:2
chr21	46011502	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:31:75:0.053:2	0/1:36,4:30:40:0.100:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	46011526	rs371768583	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,4:32:69:0.058:2	0/1:36,4:33:40:0.100:2	./.	./.	./.	0/1:83,4:30:87:0.046:2	./.	./.	./.	./.	./.
chr21	46011553	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,6:30:73:0.082:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	46011562	.	G	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:67,6:28:73:0.082:2	./.	0/1:11,3:33:14:0.214:2	0/1:74,7:32:81:0.086:2	0/1:37,3:32:40:0.075:2	0/1:101,7:28:108:0.065:2	0/1:51,4:31:55:0.073:2	./.	./.	./.	./.
chr21	46011569	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,3:33:53:0.057:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	46011573	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,3:34:57:0.053:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	46011583	rs233303	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,4:30:12:0.333:2	0/1:53,42:30:95:0.442:2	./.	0/1:67,53:29:120:0.442:2	./.	./.	0/1:34,41:30:75:0.547:2	0/1:32,23:30:55:0.418:2	./.
chr21	46011591	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,6:26:76:0.079:2	0/1:49,4:31:53:0.075:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	46011645	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,5:31:49:0.102:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	46011679	rs75339536	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:31:125:0.032:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	46011687	rs58757665	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,46:30:109:0.422:2	./.	./.	./.	./.	./.
chr21	46011717	rs9980630	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:141,8:31:149:0.054:2	0/1:86,6:25:92:0.065:2	./.	./.	0/1:103,6:27:109:0.055:2	./.	./.	0/1:99,5:32:104:0.048:2	./.	./.	./.
chr21	46011745	rs233304	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:7,143:31:150:0.953:2	0/1:7,101:31:108:0.935:2	0/1:7,20:31:27:0.741:2	0/1:37,147:30:184:0.799:2	0/1:14,170:30:184:0.924:2	0/1:92,94:30:186:0.505:2	0/1:5,135:31:140:0.964:2	0/1:13,174:31:187:0.930:2	0/1:36,152:31:188:0.809:2	0/1:54,124:31:179:0.697:2	0/1:8,93:31:102:0.921:2
chr21	46011751	rs233305	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:12,156:29:170:0.929:2	0/1:7,104:29:113:0.937:2	0/1:8,21:29:29:0.724:2	0/1:42,145:28:189:0.775:2	0/1:13,176:28:191:0.931:2	0/1:96,96:29:194:0.500:2	0/1:9,160:28:171:0.947:2	0/1:19,171:28:192:0.900:2	0/1:38,145:28:185:0.792:2	0/1:53,129:29:184:0.709:2	0/1:9,111:28:123:0.925:2
chr21	46011764	rs199511488	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:178,8:30:186:0.043:2	0/1:125,8:29:133:0.060:2	./.	0/1:177,13:30:190:0.068:2	0/1:176,18:29:194:0.093:2	0/1:180,5:32:185:0.027:2	0/1:182,10:31:192:0.052:2	0/1:178,17:30:195:0.087:2	0/1:183,7:29:190:0.037:2	0/1:177,15:31:193:0.078:2	0/1:157,17:30:175:0.098:2
chr21	46011814	rs202066340	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:172,13:28:185:0.070:2	0/1:172,18:31:190:0.095:2	0/1:53,5:30:58:0.086:2	0/1:185,8:31:193:0.041:2	./.	0/1:185,5:27:190:0.026:2	0/1:193,4:32:197:0.020:2	./.	0/1:187,6:29:193:0.031:2	./.	./.
chr21	46011891	rs233306	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:126,5:27:131:0.038:2	./.	./.	0/1:133,6:32:139:0.043:2	./.	0/1:143,12:31:155:0.077:2	./.	./.	0/1:145,7:31:152:0.046:2	0/1:153,5:31:159:0.032:2	./.
chr21	46011939	rs199761864	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,6:29:128:0.047:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	46011987	rs201334923	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,4:31:15:0.267:2	0/1:100,45:31:146:0.310:2	0/1:166,7:26:173:0.040:2	0/1:133,23:30:156:0.147:2	0/1:168,11:32:179:0.061:2	0/1:168,14:29:182:0.077:2	0/1:118,43:31:161:0.267:2	0/1:99,29:31:128:0.227:2	0/1:152,6:27:158:0.038:2
chr21	46012160	rs62220887	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,7:29:19:0.368:2	0/1:7,7:29:14:0.500:2	./.	0/1:25,8:28:33:0.242:2	0/1:16,4:28:21:0.200:2	0/1:22,5:29:27:0.185:2	0/1:11,13:29:24:0.542:2	0/1:20,7:30:28:0.259:2	0/1:12,7:30:19:0.368:2	0/1:12,9:28:21:0.429:2	0/1:8,3:29:11:0.273:2
chr21	46012177	rs368035486	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,3:29:17:0.176:2	./.	./.	./.	./.	./.	./.
chr21	46012181	rs201732843	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:11,8:26:19:0.421:2	0/1:5,7:30:12:0.583:2	./.	0/1:16,8:30:24:0.333:2	./.	0/1:16,3:30:19:0.158:2	0/1:12,10:27:22:0.455:2	0/1:16,6:30:22:0.273:2	0/1:12,6:31:18:0.333:2	0/1:8,12:30:20:0.600:2	0/1:7,3:27:10:0.300:2
chr21	46012182	rs233309	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:10,8:26:18:0.444:2	0/1:5,7:31:12:0.583:2	./.	0/1:16,8:32:24:0.333:2	./.	0/1:16,3:30:19:0.158:2	0/1:6,16:30:22:0.727:2	0/1:16,6:30:22:0.273:2	0/1:11,6:32:17:0.353:2	0/1:8,12:31:20:0.600:2	0/1:6,3:27:9:0.333:2
chr21	46012240	rs543542	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:26:28:1.00:2	0/1:2,14:26:16:0.875:2	0/1:2,4:27:6:0.667:2	0/1:9,38:25:47:0.809:2	0/1:2,13:24:15:0.867:2	0/1:28,17:27:45:0.378:2	0/1:0,8:24:8:1.00:2	0/1:3,29:25:32:0.906:2	0/1:2,20:26:22:0.909:2	0/1:0,22:25:22:1.00:2	0/1:0,15:24:15:1.00:2
chr21	46012345	rs201582050	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:93,6:32:99:0.061:2	0/1:67,6:33:73:0.082:2	./.	0/1:131,8:32:139:0.058:2	0/1:172,5:32:177:0.028:2	./.	./.	0/1:163,4:31:167:0.024:2	./.	./.	./.
chr21	46012351	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:90,5:32:95:0.053:2	0/1:69,4:33:73:0.055:2	./.	0/1:134,6:33:140:0.043:2	0/1:166,4:32:170:0.024:2	./.	./.	./.	./.	./.	./.
chr21	46012360	rs73907037	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:84,5:32:89:0.056:2	./.	./.	./.	./.	./.	./.	0/1:152,4:32:156:0.026:2	./.	./.	./.
chr21	46020527	rs1211103	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,61:32:62:0.984:2	0/1:2,24:31:26:0.923:2	0/1:0,10:32:10:1.00:2	0/1:1,77:33:78:0.987:2	0/1:1,120:31:121:0.992:2	0/1:65,70:31:135:0.519:2	0/1:1,105:32:106:0.991:2	0/1:4,118:32:122:0.967:2	0/1:0,105:33:105:1.00:2	0/1:4,68:31:72:0.944:2	0/1:0,69:32:69:1.00:2
chr21	46020720	rs70940584	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:11,4:29:15:0.267:2	./.	./.	./.	./.	./.	0/1:13,4:33:17:0.235:2	./.	./.	0/1:6,3:31:9:0.333:2	./.
chr21	46020721	rs4818725	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:11,4:28:15:0.267:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:32:9:0.333:2	./.
chr21	46020742	rs62220888	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:10,10:27:20:0.500:2	./.	./.	0/1:14,5:26:19:0.263:2	./.	0/1:25,5:27:31:0.167:2	./.	./.	0/1:6,3:32:9:0.333:2	0/1:10,4:28:14:0.286:2	0/1:7,5:27:12:0.417:2
chr21	46020867	rs944419	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,115:28:115:1.00:2	0/1:0,70:28:70:1.00:2	0/1:0,25:27:25:1.00:2	0/1:0,188:27:188:1.00:2	0/1:1,195:26:197:0.995:2	0/1:65,123:27:188:0.654:2	0/1:5,185:27:190:0.974:2	0/1:1,190:27:191:0.995:2	0/1:0,189:28:189:1.00:2	0/1:0,164:27:164:1.00:2	0/1:1,119:27:120:0.992:2
chr21	46021011	rs7283052	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:181,7:27:188:0.037:2	./.	./.	0/1:188,6:29:194:0.031:2	./.	./.	0/1:177,7:26:184:0.038:2	./.
chr21	46021088	rs388827	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,118:30:177:0.670:2	0/1:55,88:31:143:0.615:2	0/1:37,37:29:74:0.500:2	0/1:80,103:30:183:0.563:2	0/1:64,117:29:181:0.646:2	0/1:131,49:29:180:0.272:2	0/1:41,149:30:190:0.784:2	0/1:51,128:30:180:0.715:2	0/1:77,103:31:180:0.572:2	0/1:91,88:29:179:0.492:2	0/1:52,124:30:176:0.705:2
chr21	46021138	rs199939423	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:35,4:32:39:0.103:2	0/1:160,8:30:168:0.048:2	./.	0/1:159,8:31:168:0.048:2	./.	./.	0/1:152,6:29:158:0.038:2	0/1:157,11:30:168:0.065:2	./.
chr21	46021151	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:173,5:29:178:0.028:2	./.	./.	./.	./.	./.	0/1:156,7:28:163:0.043:2	./.
chr21	46021157	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:171,5:31:176:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr21	46021179	rs363877	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,136:31:159:0.855:2	0/1:10,98:31:108:0.907:2	0/1:2,23:30:25:0.920:2	0/1:22,153:31:175:0.874:2	0/1:15,145:30:160:0.906:2	0/1:82,88:30:170:0.518:2	0/1:14,86:31:100:0.860:2	0/1:13,158:31:171:0.924:2	0/1:22,143:31:166:0.867:2	0/1:22,124:31:146:0.849:2	0/1:9,74:30:83:0.892:2
chr21	46021202	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:32:165:0.024:2	./.	./.	./.	./.
chr21	46021205	rs389167	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,154:31:163:0.945:2	0/1:4,112:32:117:0.966:2	0/1:0,25:31:25:1.00:2	0/1:3,174:31:177:0.983:2	0/1:0,174:31:174:1.00:2	0/1:76,106:31:182:0.582:2	0/1:10,153:31:163:0.939:2	0/1:8,167:31:175:0.954:2	0/1:5,162:32:167:0.970:2	0/1:4,145:32:149:0.973:2	0/1:1,105:31:106:0.991:2
chr21	46021217	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:32:183:0.022:2	./.	./.	./.	./.
chr21	46021370	rs437149	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,109:27:109:1.00:2	0/1:0,71:28:71:1.00:2	0/1:0,31:29:31:1.00:2	0/1:0,160:28:160:1.00:2	0/1:1,110:27:111:0.991:2	0/1:97,66:28:163:0.405:2	0/1:6,132:27:138:0.957:2	0/1:1,132:28:133:0.992:2	0/1:0,126:28:126:1.00:2	0/1:1,124:28:125:0.992:2	0/1:0,90:27:90:1.00:2
chr21	46021390	rs446817	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:32:86:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,123:32:123:1.00:2	0/1:1,86:32:87:0.989:2	0/1:81,52:33:133:0.391:2	0/1:3,85:32:88:0.966:2	0/1:0,117:32:117:1.00:2	0/1:0,107:34:107:1.00:2	0/1:0,103:32:103:1.00:2	0/1:0,65:32:65:1.00:2
chr21	46021481	rs437334	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,8:26:9:0.889:2	0/1:0,8:27:8:1.00:2	./.	0/1:0,8:22:8:1.00:2	0/1:1,9:28:10:0.900:2	./.	0/1:1,4:27:5:0.800:2	0/1:1,6:29:7:0.857:2	0/1:0,3:27:3:1.00:2	0/1:0,7:26:7:1.00:2	0/1:0,5:28:5:1.00:2
chr21	46021494	rs369720	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,6:32:7:0.857:2	0/1:0,4:33:4:1.00:2	0/1:0,2:29:2:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,4:30:4:1.00:2	./.	./.	0/1:0,4:30:4:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,4:32:4:1.00:2
chr21	46021607	rs370092	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:27:29:1.00:2	0/1:0,26:26:26:1.00:2	0/1:0,4:29:4:1.00:2	0/1:0,63:28:63:1.00:2	0/1:1,80:27:81:0.988:2	0/1:47,25:27:72:0.347:2	0/1:1,53:27:54:0.981:2	0/1:0,79:28:79:1.00:2	0/1:0,45:29:45:1.00:2	0/1:0,65:28:65:1.00:2	0/1:0,48:26:48:1.00:2
chr21	46021722	rs12627104	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,36:33:64:0.563:2	./.	./.	./.	./.	./.
chr21	46021759	rs659638	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:29:31:1.00:2	0/1:0,27:29:27:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,39:29:39:1.00:2	0/1:29,13:29:42:0.310:2	0/1:0,35:30:35:1.00:2	0/1:2,51:30:53:0.962:2	0/1:0,53:30:53:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,39:30:39:1.00:2
chr21	46021934	rs398680	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,6:32:6:1.00:2	0/1:2,42:31:44:0.955:2	0/1:0,43:31:43:1.00:2	0/1:46,32:30:78:0.410:2	0/1:2,40:32:42:0.952:2	0/1:0,57:31:57:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,50:31:50:1.00:2
chr21	46021946	rs371248	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:33:36:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,5:29:5:1.00:2	0/1:2,42:33:44:0.955:2	0/1:0,46:32:46:1.00:2	0/1:45,29:32:74:0.392:2	0/1:2,39:34:41:0.951:2	0/1:0,65:32:65:1.00:2	0/1:0,59:34:59:1.00:2	0/1:0,25:33:25:1.00:2	0/1:0,47:32:47:1.00:2
chr21	46032094	rs411254	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:29:39:1.00:2	0/1:0,21:29:21:1.00:2	0/1:0,10:30:10:1.00:2	0/1:1,61:29:62:0.984:2	0/1:2,112:30:114:0.982:2	0/1:0,75:28:75:1.00:2	0/1:1,121:30:122:0.992:2	0/1:0,95:28:95:1.00:2	0/1:0,52:30:52:1.00:2	0/1:0,55:29:55:1.00:2	0/1:2,39:28:41:0.951:2
chr21	46032411	rs117561023	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,45:32:100:0.450:2	./.	./.	./.	./.	./.	./.	./.
chr21	46032550	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:120,4:32:124:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr21	46047265	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,3:30:9:0.333:2	./.	./.	./.	./.
chr21	46047322	rs62220925	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,16:32:23:0.696:2	0/1:13,6:30:19:0.316:2	./.	./.	./.	./.	./.
chr21	46047348	rs62220926	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,8:32:22:0.364:2	./.	./.	./.	./.	./.
chr21	46047354	rs62220927	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,10:32:27:0.370:2	./.	./.	./.	./.	./.
chr21	46047418	rs8126553	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,99:31:102:0.971:2	0/1:0,51:30:51:1.00:2	0/1:0,15:31:15:1.00:2	0/1:1,116:31:117:0.991:2	0/1:1,88:31:89:0.989:2	0/1:0,99:30:99:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,123:31:123:1.00:2	0/1:32,40:31:72:0.556:2	0/1:0,76:31:78:1.00:2	0/1:0,71:31:71:1.00:2
chr21	46047633	rs8127342	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,117:33:117:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,19:33:19:1.00:2	0/1:1,132:33:133:0.992:2	0/1:1,147:32:148:0.993:2	0/1:79,72:32:151:0.477:2	0/1:1,148:33:149:0.993:2	0/1:2,159:33:161:0.988:2	0/1:74,82:33:156:0.526:2	0/1:2,128:32:130:0.985:2	0/1:0,88:33:88:1.00:2
chr21	46047710	rs8131142	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,93:33:93:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,86:33:86:1.00:2	0/1:0,91:32:91:1.00:2	0/1:60,62:32:122:0.508:2	0/1:0,92:33:92:1.00:2	0/1:0,86:32:86:1.00:2	0/1:42,49:34:91:0.538:2	0/1:0,82:33:82:1.00:2	0/1:0,61:32:61:1.00:2
chr21	46047812	rs201392626	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,31:30:58:0.544:2	./.	./.	./.	./.	./.	./.	./.
chr21	46047857	rs9980129	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,55:32:56:0.982:2	0/1:0,27:32:27:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,51:31:51:1.00:2	0/1:20,43:32:63:0.683:2	0/1:0,39:32:39:1.00:2	0/1:1,40:31:41:0.976:2	0/1:22,37:33:59:0.627:2	0/1:0,33:31:33:1.00:2	0/1:0,28:31:28:1.00:2
chr21	46047925	rs9979457	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:31:38:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,66:31:66:1.00:2	0/1:12,41:32:53:0.774:2	0/1:0,40:32:40:1.00:2	0/1:1,55:32:56:0.982:2	0/1:26,34:33:60:0.567:2	0/1:0,41:33:41:1.00:2	0/1:0,27:32:27:1.00:2
chr21	46047971	rs463217	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,28:31:29:0.966:2	0/1:0,14:32:14:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,37:32:37:1.00:2	0/1:16,15:32:32:0.484:2	0/1:0,27:32:27:1.00:2	0/1:0,17:32:17:1.00:2
chr21	46048053	rs59484649	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,5:32:11:0.455:2	0/1:8,9:32:17:0.529:2	0/1:0,2:31:2:1.00:2	0/1:1,8:31:9:0.889:2	./.	0/1:6,6:32:12:0.500:2	./.
chr21	46048060	rs57944973	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,5:30:9:0.556:2	0/1:3,3:29:6:0.500:2	./.	./.	0/1:6,5:30:11:0.455:2	0/1:9,8:29:17:0.471:2	0/1:0,2:28:2:1.00:2	0/1:1,7:27:8:0.875:2	0/1:10,4:28:14:0.286:2	0/1:7,6:28:13:0.462:2	./.
chr21	46048143	rs28539096	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	0/1:1,5:27:6:0.833:2	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.
chr21	46048158	rs9983141	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	0/1:0,6:32:6:1.00:2	./.	./.	0/1:0,8:30:8:1.00:2	./.
chr21	46048167	rs9979752	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,3:33:4:0.750:2	./.	0/1:0,7:31:7:1.00:2	./.	./.	0/1:0,9:30:9:1.00:2	./.
chr21	46048217	rs9980512	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	0/1:9,10:28:19:0.526:2	./.	0/1:0,15:28:15:1.00:2	./.	./.	./.	0/1:0,5:33:5:1.00:2
chr21	46048265	rs450639	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,5:32:6:0.833:2	0/1:0,4:32:4:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,18:32:18:1.00:2	0/1:1,22:31:23:0.957:2	0/1:22,4:32:26:0.154:2	0/1:0,19:31:19:1.00:2	0/1:0,10:33:10:1.00:2	0/1:26,8:32:34:0.235:2	0/1:0,16:30:16:1.00:2	0/1:0,11:31:11:1.00:2
chr21	46057343	rs76468958	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,49:30:100:0.490:2	./.	./.	./.	./.	./.
chr21	46057391	rs9306108	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:20,11:32:31:0.355:2	./.	./.	0/1:25,9:30:34:0.265:2	./.	./.	0/1:21,5:31:26:0.192:2	0/1:32,7:26:39:0.179:2	./.	0/1:0,6:31:6:1.00:2	0/1:19,8:31:27:0.296:2
chr21	46057393	rs2838602	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:29:29:1.00:2	0/1:0,15:32:16:1.00:2	0/1:0,8:27:8:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,35:29:35:1.00:2	0/1:0,93:30:93:1.00:2	0/1:1,24:30:25:0.960:2	0/1:0,37:30:37:1.00:2	0/1:28,30:32:58:0.517:2	0/1:0,6:31:6:1.00:2	0/1:0,26:30:26:1.00:2
chr21	46057417	rs114653592	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:27:3:1.00:2	./.
chr21	46057418	rs116673061	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:26:4:1.00:2	./.
chr21	46057422	rs112205018	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:18,5:33:23:0.217:2	0/1:9,5:32:14:0.357:2	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:23:5:1.00:2	./.
chr21	46057548	rs4818947	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:31:67:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,76:31:76:1.00:2	0/1:1,105:31:106:0.991:2	0/1:0,97:31:97:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,96:31:96:1.00:2	0/1:43,33:30:76:0.434:2	0/1:0,62:31:62:1.00:2	0/1:0,32:31:32:1.00:2
chr21	46057582	rs76743925	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,27:32:121:0.223:2	./.	./.	./.	./.	./.
chr21	46057590	rs9306109	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,11:30:23:0.500:2	0/1:42,66:32:109:0.611:2	0/1:84,95:31:181:0.531:2	./.	./.	0/1:71,102:31:174:0.590:2	./.	0/1:47,68:30:116:0.591:2	./.
chr21	46057625	rs55677560	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,13:29:13:1.00:2	./.	0/1:106,17:31:123:0.138:2	./.	./.	./.	0/1:119,13:30:132:0.098:2	./.	0/1:99,16:33:115:0.139:2	0/1:0,17:31:17:1.00:2
chr21	46057634	rs61029972	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:49,5:29:54:0.093:2	./.	0/1:161,14:31:175:0.080:2	./.	0/1:107,38:31:146:0.262:2	./.	0/1:169,7:32:176:0.040:2	./.	0/1:143,11:32:155:0.071:2	0/1:66,9:34:76:0.120:2
chr21	46057635	rs114397261	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,38:29:146:0.260:2	./.	./.	./.	./.	./.
chr21	46057636	rs115298124	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,38:29:147:0.259:2	./.	./.	./.	./.	./.
chr21	46057711	rs4818948	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,77:32:137:0.566:2	0/1:35,30:31:66:0.462:2	./.	./.	./.	0/1:90,77:31:167:0.461:2	0/1:94,75:33:169:0.444:2	./.	./.	0/1:91,78:32:169:0.462:2	0/1:38,54:32:92:0.587:2
chr21	46057720	rs4818949	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,74:30:132:0.561:2	0/1:34,29:29:63:0.460:2	./.	./.	./.	0/1:94,82:28:176:0.466:2	0/1:96,55:30:151:0.364:2	./.	./.	0/1:90,74:29:164:0.451:2	0/1:40,57:30:97:0.588:2
chr21	46057806	rs4818950	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:31:68:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,110:30:110:1.00:2	0/1:0,116:30:116:1.00:2	0/1:67,66:29:133:0.496:2	0/1:0,87:30:87:1.00:2	0/1:1,106:30:107:0.991:2	./.	0/1:0,67:31:67:1.00:2	0/1:1,60:30:61:0.984:2
chr21	46057958	rs4818951	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,62:31:68:0.925:2	0/1:2,67:31:69:0.971:2	0/1:0,15:30:15:1.00:2	0/1:1,84:31:85:0.988:2	0/1:0,58:30:58:1.00:2	0/1:41,27:29:68:0.397:2	0/1:0,52:31:52:1.00:2	0/1:35,38:30:73:0.521:2	0/1:33,25:32:58:0.431:2	0/1:1,75:31:76:0.987:2	0/1:0,36:30:36:1.00:2
chr21	46058034	rs142158982	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,10:32:34:0.294:2	./.	./.	./.	0/1:24,17:31:41:0.415:2	./.	./.	./.
chr21	46058060	rs13051517	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,10:30:39:0.256:2	0/1:12,18:31:30:0.600:2	0/1:5,4:31:9:0.444:2	0/1:32,12:32:44:0.273:2	0/1:57,33:31:90:0.367:2	0/1:44,34:30:78:0.436:2	0/1:38,17:29:56:0.309:2	0/1:36,14:31:50:0.280:2	0/1:38,22:31:60:0.367:2	./.	0/1:35,22:31:58:0.386:2
chr21	46058209	rs1785473	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,5:31:52:0.096:2	./.	./.	0/1:41,6:34:47:0.128:2	./.	./.
chr21	46058229	rs1785474	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,6:32:7:0.857:2	0/1:0,3:32:3:1.00:2	./.	0/1:1,5:31:6:0.833:2	0/1:1,7:30:8:0.875:2	./.	0/1:0,15:32:15:1.00:2	0/1:0,4:31:4:1.00:2	0/1:33,5:25:38:0.132:2	0/1:0,4:29:5:1.00:2	0/1:1,5:31:6:0.833:2
chr21	46058244	rs28368348	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:34:3:0.667:2	0/1:0,2:34:2:1.00:2	./.	./.	0/1:1,2:35:3:0.667:2	./.	0/1:0,4:34:4:1.00:2	./.	./.	./.	./.
chr21	46058252	rs142579519	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:33:2:1.00:2	0/1:1,4:33:5:0.800:2	0/1:1,5:32:6:0.833:2	0/1:44,5:31:49:0.102:2	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.
chr21	46058255	rs117595201	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:31:2:1.00:2	0/1:1,4:32:5:0.800:2	0/1:1,5:32:6:0.833:2	0/1:45,5:31:50:0.100:2	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.
chr21	46058257	rs112728315	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:27:2:1.00:2	0/1:1,4:31:5:0.800:2	0/1:1,5:32:6:0.833:2	0/1:45,5:31:50:0.100:2	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.
chr21	46066417	rs199741274	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,42:31:72:0.583:2	./.	./.	./.	./.	./.
chr21	46066764	rs4818952	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,115:31:115:1.00:2	0/1:1,90:31:91:0.989:2	0/1:0,22:31:22:1.00:2	0/1:1,169:30:170:0.994:2	0/1:1,177:30:178:0.994:2	0/1:80,85:30:165:0.515:2	0/1:1,172:30:173:0.994:2	0/1:0,156:31:156:1.00:2	0/1:74,75:32:149:0.503:2	0/1:1,160:31:161:0.994:2	0/1:0,91:31:91:1.00:2
chr21	46067180	rs462007	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:32:38:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,6:31:6:1.00:2	0/1:12,23:30:35:0.657:2	0/1:14,10:31:24:0.417:2	0/1:0,63:31:63:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,21:32:21:1.00:2	0/1:9,8:31:17:0.471:2	0/1:1,28:30:29:0.966:2	0/1:0,18:32:18:1.00:2
chr21	46074202	rs9984726	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:28:54:1.00:2	0/1:0,36:27:36:1.00:2	0/1:0,12:28:12:1.00:2	0/1:0,79:28:79:1.00:2	0/1:0,65:28:65:1.00:2	0/1:0,75:28:75:1.00:2	0/1:3,73:28:76:0.961:2	0/1:0,112:28:112:1.00:2	0/1:33,43:29:76:0.566:2	0/1:0,56:29:56:1.00:2	0/1:0,58:28:58:1.00:2
chr21	46074522	rs76605324	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,17:15:74:0.230:2	0/1:43,20:17:63:0.317:2	0/1:54,13:17:68:0.194:2	0/1:42,14:16:56:0.250:2	0/1:70,12:13:82:0.146:2	./.	0/1:39,7:21:46:0.152:2	0/1:31,8:21:40:0.205:2
chr21	46074565	rs12482041	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:22,30:31:52:0.577:2	0/1:10,9:30:19:0.474:2	./.	./.	./.	./.	0/1:29,20:31:49:0.408:2	0/1:44,33:32:77:0.429:2	./.	0/1:16,24:32:40:0.600:2	0/1:21,10:33:31:0.323:2
chr21	46077946	rs9306111	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:30:65:1.00:2	0/1:0,42:29:42:1.00:2	0/1:2,7:30:9:0.778:2	0/1:0,98:30:98:1.00:2	0/1:0,70:29:70:1.00:2	0/1:2,67:30:70:0.971:2	0/1:1,44:29:45:0.978:2	0/1:0,81:30:81:1.00:2	0/1:55,31:31:86:0.360:2	0/1:0,62:30:62:1.00:2	0/1:0,37:30:37:1.00:2
chr21	46078220	rs9306112	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:30:42:1.00:2	0/1:0,18:28:18:1.00:2	0/1:0,4:28:4:1.00:2	0/1:0,37:28:37:1.00:2	0/1:0,27:29:27:1.00:2	0/1:2,39:29:41:0.951:2	0/1:1,44:29:45:0.978:2	0/1:20,18:28:38:0.474:2	0/1:20,17:28:37:0.459:2	0/1:0,16:30:16:1.00:2	0/1:0,33:28:33:1.00:2
chr21	46086377	rs2838622	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:99,91:32:190:0.479:2	0/1:62,50:32:112:0.446:2	0/1:0,36:32:36:1.00:2	0/1:2,164:33:166:0.988:2	0/1:2,170:33:173:0.988:2	0/1:1,177:33:178:0.994:2	0/1:98,77:33:175:0.440:2	0/1:90,97:33:187:0.519:2	0/1:88,86:33:174:0.494:2	0/1:86,87:32:173:0.503:2	0/1:105,75:32:183:0.417:2
chr21	46086407	rs12481809	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:101,81:31:182:0.445:2	0/1:56,58:32:114:0.509:2	./.	./.	./.	./.	0/1:98,98:32:196:0.500:2	./.	./.	0/1:86,74:32:160:0.463:2	0/1:71,86:31:157:0.548:2
chr21	46086457	rs12483730	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:71,70:31:141:0.496:2	0/1:51,46:31:98:0.474:2	./.	./.	./.	./.	0/1:85,99:30:184:0.538:2	./.	./.	0/1:80,73:31:154:0.477:2	0/1:71,58:31:129:0.450:2
chr21	46086488	rs75799438	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,80:32:170:0.471:2	./.	./.	./.
chr21	46086718	rs7275281	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,11:28:47:0.234:2	./.	./.	0/1:0,17:28:17:1.00:2	0/1:0,14:27:14:1.00:2	0/1:0,22:27:22:1.00:2	0/1:22,5:34:27:0.185:2	0/1:0,19:29:19:1.00:2	0/1:18,10:26:28:0.357:2	0/1:25,6:28:31:0.194:2	./.
chr21	46086719	rs63164960	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:37,10:24:47:0.213:2	./.	./.	0/1:0,17:30:17:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,22:29:22:1.00:2	0/1:22,5:27:27:0.185:2	0/1:0,19:31:19:1.00:2	0/1:17,10:31:27:0.370:2	0/1:24,6:29:30:0.200:2	./.
chr21	46086757	rs7275298	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:30:47:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,44:30:44:1.00:2	0/1:0,48:30:48:1.00:2	0/1:1,59:29:60:0.983:2	0/1:0,52:30:52:1.00:2	0/1:1,47:31:49:0.979:2	0/1:23,28:31:51:0.549:2	0/1:0,36:31:37:1.00:2	0/1:0,29:30:29:1.00:2
chr21	46086758	rs13046903	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:29:46:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,44:29:44:1.00:2	0/1:0,48:29:48:1.00:2	0/1:1,59:28:60:0.983:2	0/1:0,52:30:52:1.00:2	0/1:1,48:30:49:0.980:2	0/1:24,28:31:52:0.538:2	0/1:0,37:30:37:1.00:2	0/1:0,29:30:29:1.00:2
chr21	46086827	rs55914221	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:45,30:31:75:0.400:2	0/1:40,23:31:63:0.365:2	./.	./.	./.	./.	0/1:92,81:28:173:0.468:2	./.	./.	0/1:46,35:31:81:0.432:2	0/1:54,35:28:89:0.393:2
chr21	46101764	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,5:29:170:0.030:2	./.	./.	./.	./.	./.
chr21	46101766	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,5:28:153:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	46101770	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:157,5:30:162:0.031:2	./.	./.	./.	./.	0/1:172,4:31:176:0.023:2	./.	./.	./.	./.	./.
chr21	46101934	rs56135164	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,48:30:82:0.585:2	./.	./.	./.
chr21	46101939	rs9984476	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:27,33:31:60:0.550:2	0/1:20,29:31:49:0.592:2	./.	./.	./.	./.	./.	./.	./.	0/1:28,25:31:53:0.472:2	0/1:7,16:32:23:0.696:2
chr21	46101993	rs55881656	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,42:30:54:0.792:2	./.	./.	./.
chr21	46102015	rs7283084	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:50,48:32:98:0.490:2	0/1:23,25:33:48:0.521:2	./.	./.	./.	./.	./.	./.	./.	0/1:34,43:31:77:0.558:2	0/1:20,31:31:51:0.608:2
chr21	46102030	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:92,4:29:96:0.042:2	./.	./.	./.	./.	./.	./.
chr21	46102033	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,4:31:102:0.039:2	./.	./.	./.	./.	./.	./.
chr21	46117227	rs372674316	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,5:31:49:0.102:2	./.	./.	./.	0/1:46,6:27:52:0.115:2	./.	./.	./.
chr21	46117285	rs201215667	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,5:32:21:0.238:2	./.	0/1:2,9:31:11:0.818:2	0/1:21,11:31:32:0.344:2	0/1:25,12:30:37:0.324:2	./.	0/1:11,5:31:16:0.313:2	0/1:16,9:30:25:0.360:2	0/1:28,5:30:33:0.152:2	./.	0/1:11,4:31:15:0.267:2
chr21	46117286	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,5:31:21:0.238:2	./.	0/1:7,4:31:11:0.364:2	0/1:21,11:30:32:0.344:2	0/1:25,12:29:37:0.324:2	./.	0/1:11,5:31:16:0.313:2	0/1:16,9:29:25:0.360:2	0/1:28,5:28:33:0.152:2	./.	0/1:11,4:28:15:0.267:2
chr21	46117290	rs199953303	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,8:32:22:0.364:2	./.	0/1:7,4:30:11:0.364:2	0/1:17,14:32:31:0.452:2	0/1:24,16:30:40:0.400:2	0/1:42,7:26:49:0.143:2	0/1:12,5:30:17:0.294:2	0/1:20,10:31:30:0.333:2	0/1:25,7:32:32:0.219:2	./.	0/1:11,4:32:15:0.267:2
chr21	46117307	rs200968568	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,3:32:37:0.081:2	./.	./.	./.	./.	./.	./.	./.
chr21	46117364	rs200497262	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,17:31:41:0.415:2	./.	./.	./.	./.	./.
chr21	46117411	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,5:30:81:0.062:2	./.	./.	./.	./.	./.
chr21	46117477	rs371734706	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:33:94:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	46117659	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:30:36:0.111:2	./.	./.	./.	./.
chr21	46117792	rs34302939	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:31:4:0.750:2	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:3,2:34:5:0.400:2	./.
chr21	46191400	rs140029290	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,11:32:35:0.314:2	./.	./.	./.
chr21	46207886	rs74778563	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,44:32:93:0.473:2	./.	./.	./.	./.	./.	./.	./.
chr21	46226849	rs148509510	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,19:32:38:0.500:2
chr21	46306263	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:33:149:0.027:2	./.
chr21	46308684	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,25:29:61:0.410:2	./.	./.	./.	./.	./.
chr21	46311813	rs235326	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,11:31:11:1.00:2	0/1:20,25:33:45:0.556:2	0/1:0,67:31:67:1.00:2	0/1:40,32:31:72:0.444:2	0/1:0,53:31:53:1.00:2	0/1:0,61:31:62:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,31:32:31:1.00:2	./.
chr21	46313442	rs2230529	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:73,61:28:134:0.455:2	0/1:46,40:30:86:0.465:2	./.	0/1:89,66:27:155:0.426:2	0/1:89,62:25:151:0.411:2	./.	0/1:82,57:26:139:0.410:2	0/1:110,75:27:185:0.405:2	./.	0/1:75,70:28:145:0.483:2	./.
chr21	46314907	rs235330	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:32:50:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,85:31:85:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,89:31:89:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,69:31:69:1.00:2
chr21	46320313	rs2230528	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,70:28:132:0.530:2	./.	0/1:68,48:28:116:0.414:2	./.
chr21	46328026	rs3746973	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:20,18:32:38:0.474:2	0/1:7,8:32:15:0.533:2	0/1:0,6:31:6:1.00:2	./.	./.	0/1:17,15:32:32:0.469:2	0/1:11,10:31:21:0.476:2	0/1:18,11:32:29:0.379:2	./.	0/1:21,30:33:51:0.588:2	./.
chr21	46330229	rs35903905	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,9:32:12:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr21	46330674	rs11088969	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:25,30:30:55:0.545:2	0/1:14,12:31:26:0.462:2	./.	0/1:34,26:30:60:0.433:2	./.	0/1:31,20:29:51:0.392:2	0/1:21,31:30:52:0.596:2	./.	./.	0/1:27,24:29:51:0.471:2	./.
chr21	46355710	rs11088971	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:20,31:29:51:0.608:2	0/1:6,11:31:17:0.647:2	0/1:0,11:31:11:1.00:2	./.	0/1:47,40:30:87:0.460:2	0/1:44,40:30:84:0.476:2	0/1:58,54:29:112:0.482:2	./.	0/1:38,42:30:80:0.525:2	./.	./.
chr21	46363607	rs78520285	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,26:31:69:0.377:2
chr21	46380064	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,4:32:95:0.042:2	./.	./.	./.	./.	./.	./.
chr21	46380076	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,4:35:88:0.045:2	./.	./.	./.	./.	./.	./.
chr21	46387078	rs2294168	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:33:8:0.500:2	./.	./.
chr21	46396659	rs3737075	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	0/1:10,7:32:17:0.412:2	0/1:9,8:33:17:0.471:2	./.	0/1:3,16:34:19:0.842:2	./.	./.
chr21	46624486	rs146201109	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,50:29:105:0.481:2	./.
chr21	46641968	rs1051367	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,12:29:34:0.364:2	0/1:104,75:30:180:0.419:2	0/1:0,136:29:137:1.00:2	0/1:0,176:30:178:1.00:2	./.	0/1:2,175:30:180:0.989:2	./.	./.	0/1:98,84:29:184:0.462:2
chr21	46687549	rs376389566	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,5:30:124:0.040:2	./.	./.	./.	./.	./.
chr21	46702822	rs74961332	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:26,30:32:56:0.536:2	0/1:19,20:32:39:0.513:2	./.	0/1:55,40:31:95:0.421:2	./.	./.	./.	./.	./.	./.	0/1:40,33:33:73:0.452:2
chr21	46703410	rs73910608	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,28:31:48:0.583:2	./.	./.	./.	./.	./.
chr21	46705621	rs2297285	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,13:32:41:0.317:2	./.	./.	0/1:1,46:32:47:0.979:2	./.	./.	./.
chr21	46841398	rs2838920	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,14:32:23:0.609:2	./.	./.	0/1:85,72:30:157:0.459:2	0/1:71,75:31:146:0.514:2	./.	./.	./.	0/1:81,84:31:165:0.509:2
chr21	46842443	rs8131523	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,25:31:43:0.581:2	0/1:7,13:32:20:0.650:2	./.	./.	./.	0/1:7,13:32:20:0.650:2
chr21	46875564	rs914230	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:29:71:1.00:2	0/1:0,29:28:29:1.00:2	0/1:0,11:28:11:1.00:2	0/1:0,106:29:106:1.00:2	0/1:0,127:28:127:1.00:2	0/1:0,88:29:88:1.00:2	0/1:0,104:29:104:1.00:2	0/1:0,146:29:146:1.00:2	0/1:0,71:30:71:1.00:2	0/1:0,73:28:73:1.00:2	0/1:0,79:29:79:1.00:2
chr21	46876083	rs2236451	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:19,17:29:36:0.472:2	0/1:14,19:29:33:0.576:2	0/1:0,7:28:7:1.00:2	./.	./.	0/1:1,62:30:63:0.984:2	0/1:0,37:29:37:1.00:2	0/1:0,41:28:41:1.00:2	./.	0/1:26,21:29:47:0.447:2	0/1:26,19:29:45:0.422:2
chr21	46876173	rs2236452	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,4:31:19:0.211:2	0/1:0,10:31:10:1.00:2	0/1:2,4:32:6:0.667:2	./.	./.	./.
chr21	46876306	rs11702494	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:13,20:32:33:0.606:2	0/1:14,8:31:22:0.364:2	0/1:4,3:31:7:0.429:2	./.	./.	0/1:38,37:31:75:0.493:2	0/1:2,46:30:48:0.958:2	0/1:0,52:31:52:1.00:2	./.	0/1:31,13:31:44:0.295:2	./.
chr21	46876580	rs8133886	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.	0/1:0,4:26:4:1.00:2	./.	./.	./.	./.	./.
chr21	46876721	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	./.
chr21	46893864	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,4:31:28:0.143:2	./.	./.
chr21	46896303	rs2230687	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,40:28:71:0.563:2	0/1:23,39:27:63:0.629:2	./.	./.	./.	0/1:27,39:28:66:0.591:2
chr21	46896312	rs2230688	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,40:31:77:0.519:2	0/1:30,50:31:80:0.625:2	./.	./.	./.	0/1:30,47:33:77:0.610:2
chr21	46896381	rs17338853	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,39:30:104:0.375:2	0/1:39,24:32:63:0.381:2	./.	./.	./.	./.	./.	./.	0/1:87,59:31:147:0.404:2	./.	./.
chr21	46899842	rs1131100	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,19:32:38:0.500:2	0/1:10,4:32:14:0.286:2	./.	./.	./.	./.	./.	./.	0/1:17,16:32:33:0.485:2	./.	./.
chr21	46899857	rs1131101	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,16:31:33:0.485:2	0/1:8,4:31:12:0.333:2	./.	./.	./.	./.	./.	./.	0/1:13,14:32:27:0.519:2	./.	./.
chr21	46899872	rs1131102	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,9:33:25:0.360:2	0/1:7,3:32:10:0.300:2	./.	./.	./.	./.	./.	./.	0/1:13,13:33:26:0.500:2	./.	./.
chr21	46900410	rs2236467	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,29:32:56:0.518:2	0/1:22,12:32:34:0.353:2	./.	./.	./.	./.	./.	./.	0/1:48,38:33:86:0.442:2	./.	./.
chr21	46908355	rs11702425	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:24,28:33:52:0.538:2	0/1:12,9:33:21:0.429:2	0/1:6,6:34:12:0.500:2	./.	./.	0/1:58,28:33:86:0.326:2	0/1:1,64:33:65:0.985:2	0/1:0,83:33:83:1.00:2	./.	0/1:47,28:34:75:0.373:2	./.
chr21	46910210	rs62000962	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,22:30:48:0.458:2	0/1:19,7:32:26:0.269:2	./.	./.	./.	./.	./.	./.	0/1:33,29:32:62:0.468:2	./.	./.
chr21	46913153	rs145217573	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:26,28:30:54:0.519:2	0/1:12,13:31:25:0.520:2	./.	./.	./.	./.	./.	0/1:48,37:31:85:0.435:2	./.	0/1:16,39:31:55:0.709:2	./.
chr21	46917035	rs73370840	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,3:30:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	0/1:5,11:30:16:0.688:2	./.	./.
chr21	46918277	rs114832456	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr21	46924383	rs11544970	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:31:7:0.714:2	./.	./.	./.	0/1:10,11:31:21:0.524:2	./.	./.	./.	./.
chr21	46924389	rs11544971	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:24:5:0.800:2	./.	./.	./.	0/1:8,8:31:16:0.500:2	./.	./.	./.	./.
chr21	46925870	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,23:32:55:0.418:2	0/1:21,30:32:51:0.588:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	46927489	rs12483761	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,94:28:182:0.516:2	./.	0/1:98,96:28:194:0.495:2	0/1:111,80:27:191:0.419:2	./.	./.	./.
chr21	46929467	rs1050351	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2
chr21	46930163	rs2838952	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,71:31:118:0.602:2	0/1:43,24:30:67:0.358:2	0/1:30,33:30:63:0.524:2
chr21	46931109	rs12483377	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,19:30:49:0.388:2	0/1:23,28:30:51:0.549:2	./.	./.	./.
chr21	46951556	rs12659	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,3:26:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:27:7:0.429:2	./.	./.
chr21	46957794	rs1051266	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:3,4:32:7:0.571:2	0/1:9,4:31:13:0.308:2	0/1:0,3:32:3:1.00:2	./.	0/1:8,10:29:18:0.556:2	0/1:5,7:29:12:0.583:2	0/1:8,3:30:11:0.273:2	0/1:20,7:16:27:0.259:2	0/1:10,6:29:16:0.375:2	0/1:9,4:29:13:0.308:2	0/1:6,5:28:11:0.455:2
chr21	47321028	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:33:47:0.085:2
chr21	47329352	rs2277812	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,14:29:33:0.424:2	0/1:11,8:29:19:0.421:2	0/1:0,8:29:8:1.00:2	0/1:0,38:29:38:1.00:2	0/1:47,22:28:69:0.319:2	0/1:0,38:28:38:1.00:2	0/1:41,24:29:65:0.369:2	0/1:41,27:27:68:0.397:2	0/1:25,14:30:39:0.359:2	./.	0/1:0,24:27:24:1.00:2
chr21	47355240	rs3827269	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,19:28:38:0.500:2	./.	./.	./.	./.	./.
chr21	47409503	rs2277814	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:26:19:1.00:2	0/1:0,10:25:10:1.00:2	0/1:0,5:28:5:1.00:2	0/1:20,10:27:30:0.333:2	0/1:0,25:27:25:1.00:2	0/1:0,18:27:18:1.00:2	0/1:0,31:27:31:1.00:2	0/1:0,40:26:40:1.00:2	0/1:0,25:29:25:1.00:2	0/1:0,13:26:13:1.00:2	0/1:0,24:26:24:1.00:2
chr21	47409580	rs34495634	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:16,23:29:39:0.590:2	0/1:12,16:31:28:0.571:2	./.	./.	0/1:34,23:30:57:0.404:2	./.	0/1:24,29:32:53:0.547:2	./.	0/1:20,20:30:41:0.500:2	0/1:29,22:31:51:0.431:2	./.
chr21	47410931	rs1980982	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,34:29:34:1.00:2	0/1:0,19:29:19:1.00:2	./.	./.	0/1:2,38:29:40:0.950:2	0/1:1,22:30:23:0.957:2	0/1:0,43:30:43:1.00:2	0/1:19,21:29:40:0.525:2	0/1:0,33:29:33:1.00:2	0/1:20,12:31:32:0.375:2	0/1:0,34:28:34:1.00:2
chr21	47412654	rs7280215	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,44:30:85:0.518:2	./.	./.	./.	./.	./.
chr21	47412703	rs7279254	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,44:31:90:0.489:2	./.	./.	./.	./.	./.
chr21	47417379	rs80244281	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,3:33:35:0.086:2	./.
chr21	47417415	rs2276254	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:13,10:29:23:0.435:2	0/1:1,7:31:8:0.875:2	./.	0/1:6,12:30:18:0.667:2	0/1:14,7:29:21:0.333:2	./.	0/1:3,18:28:21:0.857:2	0/1:12,9:27:21:0.429:2	0/1:8,22:30:30:0.733:2	0/1:12,8:30:20:0.400:2	./.
chr21	47417695	rs2276256	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,9:25:30:0.300:2	./.	0/1:15,10:26:25:0.400:2	./.
chr21	47420723	rs13053065	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:31,32:28:63:0.508:2	0/1:18,17:28:35:0.486:2	./.	./.	0/1:0,67:27:67:1.00:2	0/1:38,36:27:74:0.486:2	./.	./.	0/1:43,41:29:84:0.488:2	0/1:26,30:27:56:0.536:2	0/1:0,77:27:77:1.00:2
chr21	47420726	rs7276098	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,59:31:59:1.00:2	0/1:0,34:31:34:1.00:2	./.	0/1:43,33:32:76:0.434:2	0/1:0,68:31:68:1.00:2	0/1:0,62:31:62:1.00:2	0/1:44,27:31:71:0.380:2	0/1:30,33:31:63:0.524:2	0/1:0,81:32:81:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,75:32:75:1.00:2
chr21	47423040	rs11553518	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,34:32:86:0.400:2	0/1:67,45:32:112:0.402:2	./.	./.	./.	./.	./.
chr21	47423389	rs1053312	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,5:30:8:0.625:2	./.	./.	./.	0/1:0,6:31:6:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.	0/1:7,5:32:12:0.417:2	0/1:0,3:27:3:1.00:2	0/1:0,4:26:4:1.00:2
chr21	47423507	rs1053315	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,22:31:45:0.489:2	0/1:19,9:31:28:0.321:2	./.	./.	0/1:0,81:30:81:1.00:2	0/1:39,30:31:69:0.435:2	./.	./.	0/1:30,32:31:62:0.516:2	0/1:18,17:31:35:0.486:2	0/1:1,42:31:43:0.977:2
chr21	47423509	rs13051496	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:27,23:30:50:0.460:2	0/1:10,19:31:29:0.655:2	./.	0/1:33,26:29:59:0.441:2	./.	./.	0/1:37,39:30:76:0.513:2	./.	0/1:34,30:30:64:0.469:2	./.	./.
chr21	47423636	rs1053320	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:44,51:30:95:0.537:2	0/1:39,16:32:55:0.291:2	./.	./.	0/1:0,96:31:96:1.00:2	0/1:49,48:31:97:0.495:2	./.	./.	0/1:51,51:33:102:0.500:2	0/1:49,55:32:104:0.529:2	0/1:1,74:30:75:0.987:2
chr21	47423894	rs141237809	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,34:31:68:0.507:2	./.	./.	./.	./.	./.
chr21	47532440	rs59531343	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,27:33:70:0.386:2	./.	./.
chr21	47532456	rs35881321	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr21	47533945	rs140404854	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,66:33:123:0.537:2	./.	./.	./.	./.
chr21	47536546	rs762438	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,25:33:39:0.641:2	0/1:15,14:33:29:0.483:2	0/1:5,5:33:10:0.500:2	0/1:0,73:32:73:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,70:32:70:1.00:2	0/1:1,102:32:103:0.990:2	0/1:34,29:33:63:0.460:2	0/1:29,41:33:70:0.586:2	0/1:25,28:33:53:0.528:2	0/1:30,28:32:58:0.483:2
chr21	47536717	rs139399166	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,14:32:39:0.359:2
chr21	47538960	rs2839110	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,99:31:99:1.00:2	0/1:0,64:31:64:1.00:2	0/1:9,13:31:22:0.591:2	0/1:2,141:31:143:0.986:2	0/1:0,138:30:138:1.00:2	0/1:0,169:30:169:1.00:2	0/1:0,166:31:166:1.00:2	0/1:2,174:30:176:0.989:2	0/1:0,159:32:159:1.00:2	0/1:0,116:31:116:1.00:2	0/1:1,109:31:110:0.991:2
chr21	47540421	rs73159701	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:25,26:32:51:0.510:2	0/1:11,7:32:18:0.389:2	./.	./.	./.	./.	./.	0/1:18,12:33:30:0.400:2	./.	0/1:16,23:32:39:0.590:2	0/1:14,10:33:24:0.417:2
chr21	47542378	rs17272651	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,28:31:61:0.459:2	./.
chr21	47542779	rs17357592	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,40:32:79:0.506:2	./.	0/1:31,31:33:62:0.500:2	0/1:36,26:32:62:0.419:2
chr21	47542861	rs915786	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:31:31:1.00:2	0/1:0,16:32:16:1.00:2	0/1:3,8:30:11:0.727:2	0/1:0,73:30:73:1.00:2	0/1:1,64:30:65:0.985:2	0/1:0,56:31:56:1.00:2	0/1:1,76:30:77:0.987:2	0/1:0,61:29:61:1.00:2	0/1:1,70:31:71:0.986:2	0/1:0,34:31:34:1.00:2	0/1:1,31:30:32:0.969:2
chr21	47544769	rs73382466	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,63:30:129:0.492:2	./.	./.
chr21	47544838	rs9981981	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,33:32:82:0.402:2	0/1:28,15:32:43:0.349:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	47545155	rs2839113	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:32:66:1.00:2	0/1:0,47:32:47:1.00:2	0/1:11,6:33:17:0.353:2	0/1:0,72:32:72:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,79:31:79:1.00:2	0/1:0,79:32:79:1.00:2	0/1:1,120:32:122:0.992:2	0/1:0,68:33:68:1.00:2	0/1:1,43:31:44:0.977:2	0/1:0,57:31:58:1.00:2
chr21	47545346	rs2276101	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,14:32:30:0.467:2	0/1:9,10:33:19:0.526:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	47545768	rs1042917	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,29:31:76:0.382:2	0/1:29,15:32:44:0.341:2	0/1:7,3:32:10:0.300:2	0/1:0,100:31:100:1.00:2	0/1:1,139:30:140:0.993:2	0/1:0,111:31:111:1.00:2	0/1:0,131:31:131:1.00:2	0/1:94,64:31:158:0.405:2	0/1:50,48:32:98:0.490:2	0/1:45,33:31:78:0.423:2	0/1:26,34:32:60:0.567:2
chr21	47545823	rs13052956	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,37:32:87:0.425:2	0/1:29,20:32:49:0.408:2	0/1:9,7:31:16:0.438:2	0/1:0,119:32:119:1.00:2	0/1:2,166:32:168:0.988:2	0/1:0,158:31:159:1.00:2	0/1:0,158:32:158:1.00:2	0/1:103,54:32:157:0.344:2	0/1:85,64:33:149:0.430:2	0/1:59,44:32:103:0.427:2	0/1:48,38:32:86:0.442:2
chr21	47545826	rs13046639	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,34:30:88:0.400:2	0/1:26,20:30:46:0.435:2	0/1:10,7:30:17:0.412:2	0/1:0,118:30:118:1.00:2	0/1:2,163:30:165:0.988:2	0/1:1,156:30:157:0.994:2	0/1:0,156:30:156:1.00:2	0/1:98,54:29:152:0.355:2	0/1:80,62:31:143:0.437:2	0/1:59,44:31:103:0.427:2	0/1:48,36:30:84:0.429:2
chr21	47545913	rs2839114	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,39:31:70:0.557:2	0/1:29,19:31:48:0.396:2	0/1:4,5:30:9:0.556:2	0/1:0,72:29:72:1.00:2	0/1:53,50:30:103:0.485:2	0/1:0,88:30:88:1.00:2	0/1:39,46:29:86:0.541:2	0/1:53,60:29:113:0.531:2	./.	0/1:27,17:31:45:0.386:2	0/1:33,37:31:70:0.529:2
chr21	47552130	rs9977394	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,6:30:11:0.545:2	./.
chr21	47552209	rs35548026	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.
chr21	47552385	rs6652	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,41:31:63:0.651:2	./.	0/1:13,13:31:26:0.500:2	0/1:10,8:28:18:0.444:2
chr21	47556793	rs12774	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,19:30:42:0.452:2	0/1:17,18:31:35:0.514:2	0/1:5,5:29:10:0.500:2	0/1:0,54:28:55:1.00:2	0/1:0,75:28:75:1.00:2	0/1:1,66:29:67:0.985:2	0/1:1,71:28:73:0.986:2	0/1:0,74:29:74:1.00:2	0/1:33,32:30:66:0.492:2	0/1:1,50:29:51:0.980:2	0/1:0,40:30:40:1.00:2
chr21	47556809	rs1047209	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:23,22:32:45:0.489:2	0/1:17,10:31:27:0.370:2	./.	./.	./.	./.	./.	./.	./.	0/1:24,23:32:47:0.489:2	./.
chr21	47556882	rs79622089	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,25:32:51:0.490:2	./.	./.	0/1:11,12:33:23:0.522:2
chr21	47557222	rs10432965	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,26:29:43:0.619:2	0/1:17,10:31:27:0.370:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	47558436	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,5:31:11:0.455:2	./.	./.	./.	./.	./.
chr21	47558473	rs1047179	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,6:30:6:1.00:2	./.	./.	./.	./.	./.
chr21	47558552	rs61735841	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,8:31:8:1.00:2	./.	./.	./.
chr21	47571845	rs61729391	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,7:31:9:0.778:2	./.	./.	./.	./.	./.	./.
chr21	47572887	rs61735836	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:32:5:1.00:2	./.	./.	./.	0/1:19,10:31:29:0.345:2	./.	./.	./.	./.
chr21	47575369	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,18:32:42:0.429:2	0/1:13,12:31:25:0.480:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	47575372	rs2277820	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:31:9:0.667:2	./.	./.	0/1:31,17:29:48:0.354:2	0/1:61,44:31:105:0.419:2	./.	./.	./.	0/1:24,12:32:36:0.333:2
chr21	47581423	rs14378	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,4:31:9:0.444:2	./.	0/1:3,6:32:9:0.667:2	./.	./.
chr21	47581835	rs113710653	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,12:31:12:1.00:2	./.	./.
chr21	47581949	rs113146399	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,8:32:14:0.571:2	./.	./.
chr21	47602719	rs55819909	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,42:29:95:0.442:2	./.	0/1:23,33:30:56:0.589:2	0/1:14,24:28:38:0.632:2
chr21	47608580	rs2968	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,16:33:45:0.356:2	0/1:22,20:32:42:0.476:2	./.	0/1:26,26:31:52:0.500:2	0/1:21,12:30:33:0.364:2	0/1:22,19:31:41:0.463:2	0/1:31,19:31:50:0.380:2	0/1:0,45:32:45:1.00:2	./.	0/1:0,37:32:37:1.00:2	0/1:23,24:32:47:0.511:2
chr21	47608710	rs76408279	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,27:32:49:0.551:2	./.	./.	./.	./.	./.
chr21	47614443	rs2254522	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,21:31:46:0.457:2	0/1:59,46:32:105:0.438:2	0/1:32,39:32:71:0.549:2	./.	./.	./.
chr21	47614469	rs2254524	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:17,17:33:34:0.500:2	0/1:5,12:32:17:0.706:2	./.	0/1:36,19:30:55:0.345:2	0/1:18,47:32:65:0.723:2	0/1:38,27:33:65:0.415:2	0/1:60,49:32:109:0.450:2	0/1:0,83:31:83:1.00:2	./.	0/1:0,47:32:47:1.00:2	0/1:19,14:29:33:0.424:2
chr21	47614553	rs35785446	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,10:32:36:0.278:2	./.	./.	./.	./.	./.
chr21	47629546	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:33:65:0.062:2
chr21	47632995	rs2839151	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,18:29:43:0.419:2	./.	0/1:17,11:28:28:0.393:2	0/1:24,13:28:37:0.351:2
chr21	47635176	rs34115287	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,25:30:62:0.403:2	./.	./.	./.	0/1:43,42:30:85:0.494:2	./.	0/1:0,28:29:28:1.00:2	0/1:36,22:29:58:0.379:2
chr21	47635627	rs9980968	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:22,24:33:46:0.522:2	0/1:13,12:31:25:0.480:2	0/1:4,7:32:11:0.636:2	0/1:36,27:32:63:0.429:2	0/1:48,45:31:93:0.484:2	./.	./.	0/1:32,33:30:65:0.508:2	./.	0/1:0,43:32:43:1.00:2	0/1:19,23:32:42:0.548:2
chr21	47641794	rs2839158	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,30:30:62:0.484:2	./.	./.	./.	0/1:53,28:31:81:0.346:2	./.	0/1:0,43:31:43:1.00:2	0/1:24,29:32:53:0.547:2
chr21	47642609	rs11558754	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,20:32:47:0.426:2	./.	./.	./.	0/1:42,32:32:74:0.432:2	./.	0/1:0,42:33:42:1.00:2	0/1:24,18:32:42:0.429:2
chr21	47676711	rs2839173	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,24:32:41:0.585:2	0/1:10,25:32:35:0.714:2	0/1:2,5:32:7:0.714:2	0/1:41,30:32:71:0.423:2	0/1:41,42:32:83:0.506:2	0/1:0,80:31:80:1.00:2	0/1:39,48:32:87:0.552:2	./.	0/1:2,62:33:64:0.969:2	./.	0/1:25,28:33:53:0.528:2
chr21	47676837	rs17183017	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,39:30:60:0.661:2	./.	./.	./.	./.	./.
chr21	47684061	rs142784252	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,79:31:130:0.617:2	./.	./.	./.
chr21	47685939	rs2839181	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,19:31:35:0.543:2	0/1:11,16:31:27:0.593:2	0/1:1,3:31:4:0.750:2	0/1:25,26:30:51:0.510:2	0/1:32,30:31:62:0.484:2	0/1:0,56:31:56:1.00:2	./.	./.	0/1:25,38:31:63:0.603:2	./.	0/1:19,19:30:38:0.500:2
chr21	47685952	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:33:51:0.078:2	./.	./.	./.	./.	./.
chr21	47700036	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:31:94:0.043:2	./.	./.	./.	./.	./.
chr21	47700498	rs4438580	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,65:31:149:0.436:2	./.	0/1:74,40:30:114:0.351:2	0/1:91,66:31:158:0.420:2
chr21	47703649	rs11702450	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,42:30:91:0.462:2	0/1:13,29:32:42:0.690:2	0/1:3,4:31:7:0.571:2	0/1:57,36:29:93:0.387:2	0/1:71,70:30:141:0.496:2	./.	0/1:70,49:30:119:0.412:2	0/1:87,61:30:148:0.412:2	0/1:74,41:30:115:0.357:2	0/1:2,80:31:82:0.976:2	0/1:59,43:31:102:0.422:2
chr21	47704253	rs138591880	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,40:29:86:0.465:2	./.	./.
chr21	47704896	rs9975588	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,9:31:21:0.429:2	0/1:6,4:31:10:0.400:2	./.	0/1:9,8:30:17:0.471:2	0/1:9,8:31:17:0.471:2	./.	0/1:13,7:30:20:0.350:2	0/1:17,7:29:24:0.292:2	0/1:16,13:32:29:0.448:2	0/1:1,18:30:19:0.947:2	0/1:18,13:31:31:0.419:2
chr21	47706938	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:35:61:0.066:2	./.	./.
chr21	47734659	rs13047478	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,17:32:31:0.548:2	0/1:13,16:32:29:0.552:2	0/1:2,3:31:5:0.600:2	0/1:27,28:32:55:0.509:2	0/1:3,54:31:57:0.947:2	0/1:19,33:30:52:0.635:2	./.	./.	0/1:20,42:33:62:0.677:2	./.	0/1:7,24:31:31:0.774:2
chr21	47734842	rs117095783	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,16:32:29:0.552:2	./.	0/1:14,24:33:38:0.632:2	0/1:14,17:31:31:0.548:2
chr21	47734844	rs114869542	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,16:29:29:0.552:2	./.	0/1:15,23:31:38:0.605:2	0/1:14,17:30:31:0.548:2
chr21	47735469	rs117451772	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,36:31:97:0.371:2	./.	0/1:50,40:31:90:0.444:2	./.	./.
chr21	47754449	rs59183158	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,6:29:117:0.051:2	./.	./.	./.	./.	0/1:160,5:31:165:0.030:2	0/1:175,15:33:190:0.079:2	./.	0/1:132,14:34:146:0.096:2	./.	./.
chr21	47754471	rs58106867	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,22:32:186:0.118:2	./.	0/1:128,36:32:165:0.220:2	./.	./.
chr21	47754488	rs111737555	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,9:35:156:0.058:2	./.	./.	./.
chr21	47754510	rs61735825	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,51:30:161:0.317:2	./.	./.	./.
chr21	47754524	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,9:32:165:0.055:2	./.	./.	./.
chr21	47754541	rs61735824	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,86:28:181:0.475:2	./.	./.	./.	./.	./.
chr21	47754549	rs61735823	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,19:31:188:0.101:2	./.	0/1:161,12:32:173:0.069:2	./.	./.
chr21	47754563	rs61735822	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,83:32:165:0.503:2	0/1:181,9:33:190:0.047:2	./.	0/1:148,9:31:157:0.057:2	./.	./.
chr21	47771427	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:32:110:0.036:2	./.	./.	./.
chr21	47773103	rs2249057	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:13,17:33:30:0.567:2	0/1:11,10:32:21:0.476:2	./.	./.	./.	./.	0/1:12,14:31:26:0.538:2	./.	0/1:19,19:33:38:0.500:2	0/1:0,29:33:29:1.00:2	0/1:35,22:33:57:0.386:2
chr21	47773177	rs2249060	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,16:31:40:0.400:2	./.	./.	0/1:12,9:31:21:0.429:2	./.	./.	./.	./.
chr21	47777063	rs2839223	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:33:47:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,5:32:5:1.00:2	0/1:27,24:33:51:0.471:2	0/1:1,37:32:38:0.974:2	0/1:0,48:32:48:1.00:2	0/1:21,15:33:36:0.417:2	0/1:0,52:33:52:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,63:32:63:1.00:2
chr21	47783655	rs61407822	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,55:29:116:0.474:2	./.	./.	./.
chr21	47783796	rs8131546	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,15:28:15:1.00:2	0/1:0,12:27:12:1.00:2	0/1:0,2:31:2:1.00:2	0/1:14,4:27:18:0.222:2	0/1:0,7:27:7:1.00:2	0/1:0,10:26:10:1.00:2	0/1:1,4:30:5:0.800:2	0/1:0,2:27:2:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,6:27:6:1.00:2	0/1:0,2:27:2:1.00:2
chr21	47786524	rs2839227	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:100,88:29:188:0.468:2	./.	./.	0/1:118,79:29:197:0.401:2	0/1:117,74:29:191:0.387:2	./.	./.	./.
chr21	47786817	rs2839228	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,109:32:109:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,20:32:20:1.00:2	0/1:84,65:33:149:0.436:2	0/1:0,123:32:123:1.00:2	0/1:0,112:32:112:1.00:2	0/1:79,58:33:137:0.423:2	0/1:1,129:32:130:0.992:2	0/1:0,146:33:146:1.00:2	0/1:0,107:33:107:1.00:2	0/1:2,134:33:136:0.985:2
chr21	47787002	rs6518289	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:27:25:1.00:2	0/1:0,8:27:8:1.00:2	0/1:0,5:27:5:1.00:2	0/1:13,11:27:24:0.458:2	0/1:0,19:28:19:1.00:2	0/1:0,29:28:29:1.00:2	0/1:10,13:28:23:0.565:2	0/1:0,43:27:43:1.00:2	0/1:0,25:28:25:1.00:2	0/1:0,22:28:22:1.00:2	0/1:0,15:27:15:1.00:2
chr21	47805773	rs61735805	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,22:32:54:0.407:2	./.	./.	./.	./.	./.	./.
chr21	47808679	rs7279204	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,26:31:58:0.448:2	./.	./.	0/1:24,30:30:54:0.556:2	./.	./.	./.	./.
chr21	47808772	rs35044802	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,5:31:8:0.625:2	./.	./.	./.	./.	./.
chr21	47809117	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:100,4:33:104:0.038:2	./.	./.	0/1:167,4:32:171:0.023:2	./.	./.	./.	./.	./.	./.	./.
chr21	47809133	rs369482975	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:123,4:32:127:0.031:2	./.	./.	0/1:191,4:32:195:0.021:2	./.	./.	./.	./.	./.	./.	./.
chr21	47809253	rs141990309	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:189,5:30:194:0.026:2	./.	./.	./.	./.	./.	./.
chr21	47809268	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:188,5:30:193:0.026:2	./.	./.	./.	./.	./.	./.
chr21	47811272	rs3737438	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:14,11:29:25:0.440:2	0/1:3,7:30:10:0.700:2	0/1:3,3:29:6:0.500:2	./.	./.	./.	0/1:6,9:28:15:0.600:2	./.	0/1:14,23:30:37:0.622:2	0/1:0,28:29:28:1.00:2	0/1:4,8:30:12:0.667:2
chr21	47821588	rs6518291	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,45:32:89:0.511:2	./.	./.	0/1:40,61:33:101:0.604:2	0/1:42,51:32:93:0.548:2	./.	./.	./.
chr21	47831309	rs58559714	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,19:30:34:0.559:2	./.	./.	./.
chr21	47831509	rs35940413	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,31:32:66:0.470:2	./.	0/1:41,31:33:72:0.431:2	./.	./.	./.
chr21	47831522	rs61735543	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,34:31:87:0.391:2	./.	./.	./.
chr21	47831618	rs16979162	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,24:31:63:0.381:2	./.	./.	./.
chr21	47836122	rs2839245	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,65:29:124:0.524:2	./.	./.	./.
chr21	47836206	rs35978208	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,41:31:103:0.398:2	./.	./.	./.
chr21	47836216	rs60444527	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,43:29:100:0.430:2	./.	./.	./.
chr21	47836395	rs1044998	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,23:33:52:0.442:2	./.	./.	./.
chr21	47836403	rs34151633	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,35:32:67:0.522:2	./.	./.	./.	./.	./.
chr21	47836426	rs57108405	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,23:28:49:0.469:2	./.	./.	./.
chr21	47836547	rs35346764	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,32:30:58:0.552:2	./.	./.	./.
chr21	47836571	rs61735812	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,38:30:65:0.585:2	./.	./.	./.
chr21	47836653	rs2070425	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:5,9:33:14:0.643:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,19:33:19:1.00:2	0/1:4,4:31:8:0.500:2
chr21	47836750	rs61738290	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.
chr21	47838123	rs2839246	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,36:32:84:0.429:2	./.	./.	./.
chr21	47841941	rs7277175	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,23:28:43:0.535:2	./.	./.	./.
chr21	47847662	rs144662431	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,3:32:43:0.070:2
chr21	47848459	rs2839256	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,6:31:11:0.545:2	./.	./.	./.
chr21	47850033	rs61735820	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,47:32:98:0.485:2	./.
chr21	47850083	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,6:31:18:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr21	47850484	rs2070426	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,50:29:91:0.549:2	0/1:29,20:29:49:0.408:2	0/1:20,5:31:25:0.200:2	0/1:79,57:29:136:0.419:2	./.	0/1:70,58:29:128:0.453:2	0/1:1,141:29:142:0.993:2	./.	0/1:46,52:29:98:0.531:2	0/1:0,86:29:86:1.00:2	0/1:60,43:28:103:0.417:2
chr21	47851753	rs2073376	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:12,12:30:24:0.500:2	0/1:12,8:30:20:0.400:2	./.	0/1:17,16:30:33:0.485:2	./.	0/1:13,16:29:29:0.552:2	0/1:0,30:29:30:1.00:2	0/1:9,20:28:29:0.690:2	0/1:17,14:30:31:0.452:2	0/1:0,29:30:29:1.00:2	0/1:8,13:30:21:0.619:2
chr21	47851796	rs9983522	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,17:30:32:0.531:2	./.	./.	0/1:22,17:32:39:0.436:2	./.	./.	./.	./.
chr21	47852085	rs35147998	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,21:31:59:0.356:2	./.	0/1:34,21:30:55:0.382:2	./.	./.
chr21	47855876	rs17371795	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,30:30:58:0.517:2	./.	./.	0/1:55,55:30:110:0.500:2	./.	./.	./.	./.
chr21	47856053	rs61735826	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,9:33:9:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	47858248	rs4818842	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,64:34:157:0.408:2	./.	./.	./.	./.
chr21	47863757	rs2073380	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:10,6:32:16:0.375:2	0/1:9,10:30:19:0.526:2	./.	./.	./.	./.	./.	./.	./.	0/1:4,10:33:14:0.714:2	./.
chr21	47910523	rs7279002	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:41,40:29:81:0.494:2	0/1:17,16:28:33:0.485:2	0/1:4,5:29:9:0.556:2	./.	./.	./.	./.	0/1:58,40:28:98:0.408:2	./.	0/1:35,31:29:66:0.470:2	./.
chr21	47916933	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:33:92:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	47918662	rs7283507	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,12:30:20:0.600:2	0/1:7,8:28:15:0.533:2
chr21	47952048	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,70:31:176:0.398:2	0/1:61,51:32:112:0.455:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	47952128	rs192323584	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,65:33:149:0.436:2	./.	./.	./.	./.	./.	./.	./.
chr21	47958405	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:108,4:32:112:0.036:2	./.	./.	./.	./.	./.	./.
chr21	47961711	rs2070435	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:31,41:31:72:0.569:2	0/1:24,28:31:52:0.538:2	./.	0/1:38,37:29:75:0.493:2	./.	./.	./.	0/1:52,41:30:93:0.441:2	./.	0/1:0,90:31:90:1.00:2	0/1:41,43:31:84:0.512:2
chr21	47966848	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:134,4:31:138:0.029:2	./.	./.	./.	./.	./.	./.	./.
chr21	47969793	rs17302700	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,16:31:31:0.516:2	./.	0/1:28,22:30:50:0.440:2	./.	./.
chr21	47970581	rs2255397	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:31:10:0.500:2	0/1:51,50:31:103:0.495:2	./.	./.	./.	0/1:63,66:30:129:0.512:2	./.	0/1:54,38:31:92:0.413:2	0/1:58,48:31:108:0.453:2
chr21	47971585	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,29:30:56:0.518:2	0/1:9,4:33:13:0.308:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr21	47971652	rs200164053	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,30:32:51:0.588:2	./.
chr21	47974578	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,58:30:79:0.734:2	./.	./.	./.
chr21	47974582	rs1107065	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,25:30:61:0.410:2	0/1:17,15:30:32:0.469:2	0/1:0,5:32:5:1.00:2	0/1:41,25:31:67:0.379:2	0/1:1,48:30:49:0.980:2	./.	0/1:43,10:33:53:0.189:2	0/1:59,16:30:75:0.213:2	./.	0/1:27,29:31:56:0.518:2	0/1:14,8:25:22:0.364:2
chr21	47985655	rs2248636	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:33:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr21	48022230	rs1051169	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,44:32:109:0.404:2	0/1:29,26:33:55:0.473:2	0/1:13,8:33:21:0.381:2	0/1:1,147:33:148:0.993:2	0/1:0,100:33:100:1.00:2	0/1:0,129:32:129:1.00:2	0/1:66,53:33:119:0.445:2	0/1:80,73:32:153:0.477:2	0/1:73,78:33:151:0.517:2	0/1:56,66:33:122:0.541:2	0/1:2,155:32:157:0.987:2
chr21	48063476	rs10854485	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,26:28:62:0.419:2	0/1:27,20:29:47:0.426:2	0/1:5,9:31:14:0.643:2	0/1:0,84:29:84:1.00:2	0/1:0,143:29:143:1.00:2	0/1:0,96:29:96:1.00:2	0/1:80,74:30:154:0.481:2	0/1:0,129:29:129:1.00:2	0/1:58,42:31:100:0.420:2	0/1:0,84:30:84:1.00:2	0/1:0,80:28:80:1.00:2
chr22	16258279	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:177,13:33:190:0.068:2	0/1:180,16:32:196:0.082:2	0/1:66,27:31:93:0.290:2	0/1:162,33:32:195:0.169:2	0/1:176,14:31:190:0.074:2	0/1:158,42:32:200:0.210:2	0/1:176,15:32:191:0.079:2	0/1:174,16:32:191:0.084:2	0/1:179,17:33:196:0.087:2	./.	./.
chr22	16266968	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,20:34:192:0.104:2	./.	./.
chr22	16267026	rs377249151	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:32:185:0.022:2
chr22	16268147	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:107,9:31:116:0.078:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	16268181	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:130,4:31:134:0.030:2	./.	./.	./.	0/1:169,5:31:174:0.029:2	./.	0/1:185,10:33:196:0.051:2	./.	0/1:187,6:31:193:0.031:2
chr22	16268189	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:197:0.020:2	./.	./.	./.	./.	./.
chr22	16268197	.	C	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:167,32:31:199:0.161:2	0/1:176,18:32:195:0.093:2	0/1:107,15:32:124:0.123:2	0/1:167,24:32:191:0.126:2	0/1:156,14:31:170:0.082:2	./.	./.	./.	./.	./.	./.
chr22	16277775	rs201571982	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,16:30:186:0.086:2	0/1:176,21:31:197:0.107:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	16277842	rs200138043	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:140,51:32:191:0.267:2	./.	./.	./.	0/1:160,17:32:177:0.096:2	./.	./.	./.
chr22	16277852	rs200742649	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,11:32:74:0.149:2	./.	0/1:162,14:32:176:0.080:2	0/1:161,37:31:198:0.187:2	./.	./.	0/1:166,28:33:194:0.144:2	0/1:103,79:33:182:0.434:2	0/1:145,50:33:195:0.256:2
chr22	16287339	rs199952431	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:169,21:32:190:0.111:2	0/1:175,16:32:191:0.084:2	0/1:81,20:32:101:0.198:2	0/1:170,21:31:191:0.110:2	0/1:175,21:31:196:0.107:2	0/1:169,26:32:195:0.133:2	./.	0/1:171,23:31:194:0.119:2	0/1:181,12:32:193:0.062:2	0/1:120,71:32:191:0.372:2	0/1:171,24:31:195:0.123:2
chr22	16287346	rs200013113	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:171,21:31:192:0.109:2	0/1:173,15:30:188:0.080:2	0/1:73,18:30:91:0.198:2	0/1:176,19:29:195:0.097:2	0/1:177,20:30:197:0.102:2	0/1:170,25:29:195:0.128:2	./.	0/1:176,21:29:197:0.107:2	0/1:179,11:30:191:0.058:2	0/1:120,67:30:187:0.358:2	0/1:171,24:31:195:0.123:2
chr22	16287349	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:182,8:31:190:0.042:2	0/1:185,7:31:192:0.036:2	./.	0/1:178,17:30:195:0.087:2	./.	./.	./.	0/1:177,20:31:198:0.102:2	./.	./.	./.
chr22	16287396	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,4:32:59:0.068:2	./.	./.	./.	./.	0/1:185,6:31:191:0.031:2	./.	./.	./.
chr22	16287427	rs202022316	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,10:32:151:0.066:2	0/1:183,11:32:194:0.057:2	0/1:170,4:33:174:0.023:2	./.	./.	./.
chr22	16287431	rs200405088	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:181,9:32:190:0.047:2	0/1:149,16:32:165:0.097:2	./.	./.	0/1:173,8:33:181:0.044:2	0/1:109,12:30:121:0.099:2	0/1:184,11:32:195:0.056:2	0/1:160,8:32:168:0.048:2	./.	0/1:127,10:32:137:0.073:2	0/1:179,8:33:187:0.043:2
chr22	16287511	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:169,13:26:182:0.071:2	0/1:174,9:30:183:0.049:2	./.	0/1:183,6:30:189:0.032:2	0/1:182,12:29:194:0.062:2	./.	./.	./.	0/1:176,6:27:182:0.033:2	0/1:125,5:27:130:0.038:2	./.
chr22	16287538	rs200179046	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,42:31:183:0.231:2	0/1:113,48:30:162:0.298:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	16287562	rs202187764	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:158,12:27:171:0.071:2	0/1:143,12:29:155:0.077:2	./.	0/1:175,5:29:180:0.028:2	0/1:172,11:31:183:0.060:2	0/1:113,6:26:119:0.050:2	0/1:123,26:30:149:0.174:2	0/1:147,7:29:154:0.045:2	0/1:160,7:31:167:0.042:2	./.	0/1:84,29:31:113:0.257:2
chr22	16287579	rs200013384	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,6:26:114:0.053:2	./.	./.	./.	./.	./.
chr22	16287622	rs200785274	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:173,14:31:187:0.075:2	0/1:138,27:30:165:0.164:2	./.	./.	./.	0/1:137,5:31:143:0.035:2	0/1:121,16:30:137:0.117:2	0/1:150,8:30:158:0.051:2	./.	0/1:85,6:30:91:0.066:2	0/1:99,13:30:112:0.116:2
chr22	16287673	.	C	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:169,15:32:184:0.082:2	0/1:168,14:31:182:0.077:2	0/1:38,5:32:43:0.116:2	0/1:183,7:30:190:0.037:2	0/1:182,10:26:192:0.052:2	0/1:136,17:30:153:0.111:2	0/1:159,11:30:170:0.065:2	0/1:160,10:31:170:0.059:2	0/1:177,10:33:187:0.053:2	0/1:101,10:31:111:0.090:2	0/1:137,22:31:160:0.138:2
chr22	16287690	rs201135234	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:183,7:30:190:0.037:2	0/1:169,10:30:179:0.056:2	./.	./.	./.	0/1:144,6:30:150:0.040:2	./.	0/1:147,9:29:157:0.058:2	./.	./.	./.
chr22	16287733	.	A	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:178,10:29:188:0.053:2	0/1:166,8:29:174:0.046:2	./.	0/1:184,9:29:193:0.047:2	0/1:194,4:32:198:0.020:2	0/1:156,18:31:174:0.103:2	0/1:176,7:30:183:0.038:2	0/1:135,8:31:143:0.056:2	./.	0/1:127,8:31:135:0.059:2	0/1:164,18:30:182:0.099:2
chr22	16287789	rs201322170	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:177,9:31:186:0.048:2	0/1:180,10:26:190:0.053:2	./.	0/1:159,33:32:192:0.172:2	./.	0/1:180,14:31:194:0.072:2	0/1:190,4:34:194:0.021:2	0/1:184,14:31:198:0.071:2	0/1:188,5:33:193:0.026:2	0/1:184,5:33:189:0.026:2	0/1:180,6:31:186:0.032:2
chr22	16287801	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:180,6:31:186:0.032:2	./.	./.	./.	./.	./.	0/1:187,6:31:193:0.031:2	./.	./.	./.
chr22	16287851	rs72485235	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:151,38:30:189:0.201:2	./.	./.	./.	./.	./.	./.	./.
chr22	16287859	rs201564672	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,5:30:184:0.027:2	./.	./.	./.
chr22	16287866	rs201976973	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,5:29:185:0.027:2	./.	./.	./.
chr22	16448899	rs200862505	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:142,54:32:196:0.276:2	0/1:150,41:32:191:0.215:2	./.	./.	./.	0/1:168,28:32:196:0.143:2	./.	./.	./.	0/1:158,39:31:197:0.198:2	0/1:166,31:32:197:0.157:2
chr22	16448903	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,16:32:198:0.081:2	./.
chr22	16449003	rs200330272	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:182,16:33:198:0.081:2	0/1:172,18:33:190:0.095:2	0/1:96,25:33:121:0.207:2	./.	0/1:181,16:32:197:0.081:2	0/1:181,19:32:200:0.095:2	0/1:174,22:32:196:0.112:2	./.	0/1:162,31:34:193:0.161:2	./.	0/1:181,18:32:199:0.090:2
chr22	16449050	rs148001219	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,22:31:59:0.373:2	./.	0/1:115,56:30:171:0.327:2	0/1:134,60:30:194:0.309:2	0/1:137,62:30:199:0.312:2	0/1:130,66:30:197:0.337:2	0/1:27,160:31:187:0.856:2	0/1:111,80:31:191:0.419:2	0/1:121,71:31:192:0.370:2
chr22	16449152	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,5:30:192:0.026:2	./.	./.	./.	./.	./.
chr22	16449209	.	C	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:176,18:31:194:0.093:2	0/1:172,23:32:195:0.118:2	0/1:60,10:27:70:0.143:2	0/1:175,24:30:199:0.121:2	0/1:186,12:33:198:0.061:2	0/1:148,48:30:196:0.245:2	0/1:182,16:30:198:0.081:2	0/1:185,14:29:199:0.070:2	0/1:180,17:30:197:0.086:2	0/1:170,25:31:195:0.128:2	0/1:183,11:28:194:0.057:2
chr22	16449259	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,15:31:199:0.075:2	./.	./.	./.	./.	./.
chr22	16449304	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:33:194:0.026:2	0/1:191,6:33:197:0.030:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	16449368	.	A	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:192,6:31:198:0.030:2	./.	./.	0/1:186,9:33:195:0.046:2	0/1:182,5:31:187:0.027:2	0/1:185,8:33:193:0.041:2	./.	./.	./.	0/1:192,4:33:196:0.020:2	./.
chr22	16449460	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:33:196:0.020:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	16449491	rs202124975	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:182,17:30:199:0.085:2	0/1:167,13:31:180:0.072:2	0/1:29,5:29:34:0.147:2	0/1:149,32:31:181:0.177:2	0/1:144,21:29:165:0.127:2	0/1:135,47:31:182:0.258:2	0/1:157,18:30:175:0.103:2	0/1:166,23:31:189:0.122:2	./.	0/1:147,34:32:181:0.188:2	0/1:176,18:33:194:0.093:2
chr22	16449517	rs201085735	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:183,14:29:197:0.071:2	0/1:178,17:31:195:0.087:2	./.	./.	./.	0/1:179,17:29:197:0.087:2	./.	./.	./.	./.	./.
chr22	16449525	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,12:33:198:0.061:2	0/1:185,10:32:195:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	16449536	rs202150076	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:187,4:32:191:0.021:2	./.	./.	0/1:186,6:32:192:0.031:2	0/1:183,12:31:195:0.062:2	0/1:183,13:32:196:0.066:2	./.	./.	./.	./.	./.
chr22	16449539	rs199856986	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:181,8:28:189:0.042:2	0/1:178,15:33:193:0.078:2	./.	./.	./.	0/1:174,22:31:196:0.112:2	0/1:147,51:32:199:0.258:2	./.	./.	./.	0/1:181,14:30:195:0.072:2
chr22	16449599	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,20:32:85:0.235:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	16449603	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,4:33:89:0.045:2	./.	./.	./.	./.	./.	0/1:186,10:34:196:0.051:2	./.	./.
chr22	16449617	rs200369404	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.	./.	./.	./.
chr22	16449659	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,7:32:197:0.036:2	0/1:193,5:32:198:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	16449708	.	A	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,8:31:196:0.041:2	0/1:190,7:33:197:0.036:2	./.	./.	./.	0/1:187,11:31:198:0.056:2	0/1:148,15:33:163:0.092:2	./.	./.	./.	0/1:190,5:33:195:0.026:2
chr22	16449714	.	C	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,12:33:194:0.062:2	0/1:189,10:33:199:0.050:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,6:32:194:0.031:2
chr22	16449718	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:153,8:31:161:0.050:2	./.	./.	./.	./.	./.	./.
chr22	16449784	rs200562384	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:152,39:32:191:0.204:2	0/1:119,26:31:145:0.179:2	./.	0/1:144,38:32:182:0.209:2	0/1:146,14:32:160:0.088:2	0/1:160,8:30:168:0.048:2	0/1:91,18:32:109:0.165:2	0/1:144,15:32:159:0.094:2	0/1:106,46:33:152:0.303:2	0/1:110,11:31:121:0.091:2	0/1:150,26:31:176:0.148:2
chr22	16449798	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:150,13:30:163:0.080:2	./.	0/1:128,14:29:142:0.099:2	./.	./.	./.	./.	./.
chr22	17072347	rs139948519	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	17072483	rs2236639	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,124:29:124:1.00:2	0/1:0,70:29:70:1.00:2	0/1:0,14:28:14:1.00:2	0/1:0,148:30:148:1.00:2	0/1:1,191:29:192:0.995:2	0/1:0,175:29:175:1.00:2	0/1:118,71:28:189:0.376:2	0/1:1,188:29:189:0.995:2	0/1:0,186:29:186:1.00:2	0/1:0,163:28:163:1.00:2	0/1:0,132:28:132:1.00:2
chr22	17072663	rs369684364	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,5:33:133:0.038:2	./.	./.	./.
chr22	17073066	rs5747988	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:27:25:1.00:2	0/1:0,26:28:26:1.00:2	0/1:0,7:27:7:1.00:2	0/1:0,31:28:31:1.00:2	0/1:0,25:27:25:1.00:2	0/1:0,33:27:33:1.00:2	0/1:10,14:28:24:0.583:2	0/1:0,30:28:30:1.00:2	0/1:0,27:27:28:1.00:2	0/1:0,27:26:27:1.00:2	0/1:0,19:26:19:1.00:2
chr22	17073441	rs150667617	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,31:29:54:0.574:2	./.	./.	./.	./.	./.	./.	./.
chr22	17265053	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,4:34:32:0.125:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	17265124	rs114306778	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:32:7:1.00:2	0/1:0,6:30:6:1.00:2	./.	./.	./.	0/1:0,2:33:2:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,6:31:6:1.00:2	./.	0/1:1,6:33:7:0.857:2	0/1:0,6:33:6:1.00:2
chr22	17280795	rs189983916	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:101,93:30:194:0.479:2	./.	./.	./.	./.	./.	./.
chr22	17280822	rs5748648	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,22:32:49:0.449:2	./.	./.	./.	./.	./.	0/1:109,86:33:195:0.441:2	./.	0/1:98,89:33:188:0.476:2
chr22	17446991	rs4819925	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,78:33:78:1.00:2	0/1:0,48:32:48:1.00:2	0/1:3,10:32:13:0.769:2	0/1:2,107:32:109:0.982:2	0/1:0,108:32:108:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,142:32:142:1.00:2	0/1:84,78:32:162:0.481:2	0/1:0,115:33:115:1.00:2	0/1:0,96:32:96:1.00:2	0/1:48,49:32:97:0.505:2
chr22	17449258	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,7:32:10:0.700:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	17450881	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:35:123:0.033:2	./.
chr22	17469026	rs5992604	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,30:32:62:0.484:2	0/1:12,19:32:31:0.613:2	0/1:2,6:31:8:0.750:2	0/1:42,20:31:62:0.323:2	0/1:0,32:31:32:1.00:2	./.	0/1:35,25:32:60:0.417:2	./.	0/1:34,30:32:64:0.469:2	0/1:0,53:32:53:1.00:2	./.
chr22	17469049	rs28502153	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,21:32:51:0.412:2	0/1:7,17:32:24:0.708:2	0/1:0,5:30:5:1.00:2	0/1:33,16:32:49:0.327:2	0/1:0,28:30:28:1.00:2	./.	0/1:32,20:31:52:0.385:2	./.	0/1:27,28:32:57:0.509:2	0/1:0,49:31:49:1.00:2	./.
chr22	17488884	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:31:92:0.043:2	./.	./.	./.	./.
chr22	17582923	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:33:165:0.024:2	./.	./.	./.	./.
chr22	17586471	rs2241046	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,96:32:98:0.980:2	0/1:1,64:32:65:0.985:2	0/1:9,13:31:22:0.591:2	0/1:97,69:32:166:0.416:2	0/1:52,60:31:112:0.536:2	0/1:1,146:31:147:0.993:2	0/1:75,55:31:130:0.423:2	0/1:1,135:31:136:0.993:2	0/1:0,146:32:146:1.00:2	0/1:0,122:32:122:1.00:2	0/1:0,162:32:162:1.00:2
chr22	17589209	rs879577	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,65:32:65:1.00:2	0/1:1,53:31:54:0.981:2	./.	./.	0/1:77,71:31:148:0.480:2	./.	./.	0/1:0,146:31:146:1.00:2	0/1:51,46:31:97:0.474:2	./.	./.
chr22	17589246	rs879576	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,54:32:114:0.474:2	./.	./.	./.	./.	0/1:42,49:33:91:0.538:2	0/1:49,38:33:87:0.437:2	0/1:52,48:31:100:0.480:2
chr22	17589567	rs879575	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,11:30:11:1.00:2	0/1:0,8:32:8:1.00:2	./.	./.	0/1:7,13:32:20:0.650:2	./.	./.	0/1:0,18:30:18:1.00:2	0/1:2,6:30:8:0.750:2	./.	./.
chr22	17590269	rs4819555	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,22:32:22:1.00:2	0/1:2,9:31:11:0.818:2	./.	./.	0/1:14,18:31:32:0.563:2	./.	./.	0/1:0,27:32:27:1.00:2	0/1:18,15:33:33:0.455:2	./.	./.
chr22	17600293	rs13056456	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,10:30:29:0.345:2	./.	./.	./.	./.
chr22	17600497	rs3827295	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	./.	./.	./.
chr22	17600977	rs5994165	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,5:33:15:0.333:2	0/1:6,8:32:14:0.571:2	./.	0/1:23,13:31:36:0.361:2	0/1:28,33:30:61:0.541:2	./.	0/1:33,25:30:58:0.431:2	0/1:0,49:31:49:1.00:2	./.	0/1:7,6:33:13:0.462:2	0/1:5,10:31:15:0.667:2
chr22	17601037	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,4:30:34:0.118:2	./.	./.	./.	./.	./.	./.	./.
chr22	17625915	rs35665085	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,26:29:69:0.377:2	./.	./.	./.	./.	./.
chr22	17630486	rs1034859	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,8:29:20:0.400:2	0/1:12,3:31:15:0.200:2	./.	./.	0/1:12,9:30:21:0.429:2	0/1:12,12:29:24:0.500:2	0/1:16,6:30:22:0.273:2	0/1:0,32:30:32:1.00:2	./.	0/1:13,8:29:21:0.381:2	0/1:15,15:30:30:0.500:2
chr22	17640045	rs7287672	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	0/1:0,2:34:2:1.00:2	0/1:0,2:34:2:1.00:2	./.
chr22	17662793	rs7289170	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,19:29:42:0.452:2	0/1:5,12:28:17:0.706:2	./.	./.	./.	0/1:45,38:29:83:0.458:2	0/1:29,31:29:60:0.517:2	0/1:34,35:29:69:0.507:2	0/1:0,68:30:68:1.00:2	0/1:48,27:29:75:0.360:2	0/1:33,35:29:68:0.515:2
chr22	17669306	rs2231495	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:21,19:29:40:0.475:2	0/1:13,8:28:21:0.381:2	./.	./.	0/1:0,108:30:108:1.00:2	./.	0/1:55,42:28:97:0.433:2	0/1:0,87:30:87:1.00:2	./.	0/1:24,24:30:48:0.500:2	0/1:37,17:28:54:0.315:2
chr22	17684537	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.	./.	./.
chr22	17690409	rs362129	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,36:29:59:0.610:2	0/1:25,24:30:49:0.490:2	0/1:0,5:30:5:1.00:2	0/1:43,35:27:79:0.449:2	0/1:54,30:28:84:0.357:2	0/1:0,80:28:80:1.00:2	0/1:0,58:27:58:1.00:2	0/1:1,104:28:105:0.990:2	./.	0/1:37,35:28:72:0.486:2	0/1:43,52:28:95:0.547:2
chr22	17690430	rs7289141	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,26:30:65:0.400:2	0/1:27,25:31:52:0.481:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	18021604	rs1296794	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,35:30:90:0.389:2	./.	0/1:0,49:31:49:1.00:2	./.
chr22	18111431	rs7751	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,20:33:39:0.513:2	0/1:26,15:33:41:0.366:2	./.	0/1:0,48:33:48:1.00:2	./.
chr22	18165995	rs2587070	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,13:33:13:1.00:2	0/1:44,22:32:67:0.333:2	./.	./.	./.	0/1:51,37:32:88:0.420:2	./.	0/1:56,35:33:91:0.385:2	./.
chr22	18171776	rs61741787	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,29:31:49:0.592:2	0/1:14,18:32:32:0.563:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	18185041	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:31:149:0.027:2
chr22	18185117	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,10:31:76:0.132:2	./.
chr22	18209496	rs73378798	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,48:30:101:0.475:2	./.	./.	./.	./.
chr22	18209613	rs4488761	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,14:30:37:0.378:2	0/1:20,12:28:32:0.375:2	./.	0/1:31,24:30:55:0.436:2	0/1:0,50:28:50:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,61:30:61:1.00:2	./.	0/1:30,27:31:57:0.474:2	./.	0/1:0,41:30:41:1.00:2
chr22	18209718	rs2535688	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:16,11:31:27:0.407:2	./.	./.	./.	./.	./.	0/1:11,17:31:28:0.607:2	./.
chr22	18209920	rs9306198	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,45:31:98:0.459:2	0/1:45,42:32:88:0.483:2	./.	./.
chr22	18218311	rs8190354	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,25:32:58:0.431:2
chr22	18220831	rs11538	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,15:32:17:0.882:2	0/1:76,64:32:140:0.457:2	./.	./.	./.	./.	./.	0/1:36,42:32:78:0.538:2	./.
chr22	18220916	rs150084106	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,20:31:37:0.541:2	./.
chr22	18222903	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,5:34:144:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr22	18226690	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:31:96:0.042:2	./.	./.	./.	./.
chr22	18293502	rs61739631	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,50:30:130:0.385:2	./.	./.	./.	0/1:63,48:32:111:0.432:2	./.	./.
chr22	18300240	rs5992854	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:1,61:32:62:0.984:2	0/1:0,52:33:52:1.00:2	0/1:5,5:33:10:0.500:2	./.	./.	0/1:40,21:33:61:0.344:2	0/1:1,53:32:54:0.981:2	./.	0/1:42,47:34:89:0.528:2	0/1:0,69:31:69:1.00:2	0/1:0,91:32:91:1.00:2
chr22	18300594	rs11704160	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,29:31:29:1.00:2	0/1:1,31:30:32:0.969:2	./.	./.	./.	0/1:30,36:31:66:0.545:2	0/1:17,34:30:51:0.667:2	./.	0/1:23,25:31:48:0.521:2	0/1:0,51:31:51:1.00:2	0/1:14,11:31:25:0.440:2
chr22	18300710	rs370318089	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,11:29:28:0.393:2
chr22	18300775	rs61744842	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,12:28:18:0.667:2
chr22	18300879	rs11704809	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,31:30:31:1.00:2	0/1:0,25:30:25:1.00:2	./.	./.	./.	0/1:26,18:28:44:0.409:2	0/1:37,36:28:73:0.493:2	./.	0/1:23,21:30:45:0.477:2	0/1:1,36:30:37:0.973:2	0/1:26,20:30:47:0.435:2
chr22	18301508	rs148613283	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,47:30:66:0.712:2	0/1:21,22:28:43:0.512:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	18301570	rs73876508	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,37:32:76:0.487:2	./.	./.	./.	./.
chr22	18301693	rs8135914	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:31:11:1.00:2	0/1:0,6:30:6:1.00:2	./.	./.	./.	0/1:16,7:32:23:0.304:2	0/1:15,5:28:20:0.250:2	./.	0/1:9,4:33:13:0.308:2	0/1:1,10:30:11:0.909:2	0/1:10,4:32:14:0.286:2
chr22	18304821	rs45514595	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,34:33:76:0.447:2	./.	./.	./.	0/1:21,15:33:36:0.417:2
chr22	18304891	rs45544141	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,32:31:70:0.457:2	./.	./.	./.	0/1:22,12:32:34:0.353:2
chr22	18310439	rs61744286	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,5:29:6:0.833:2	./.	./.	./.	0/1:24,18:28:42:0.429:2	./.	./.	./.	0/1:10,7:29:18:0.412:2
chr22	18324564	rs750559	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:30:9:1.00:2	./.	0/1:1,6:25:7:0.857:2	./.	./.	./.	./.	0/1:2,4:31:6:0.667:2
chr22	18347738	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:31:65:0.062:2	./.	./.
chr22	18354766	rs9617630	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:17,30:32:48:0.638:2	0/1:15,10:31:25:0.400:2	./.	./.	./.	./.	0/1:46,41:32:87:0.471:2	./.	0/1:34,29:33:63:0.460:2	./.	./.
chr22	18354783	rs5992128	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,27:31:61:0.443:2	./.	./.	./.	./.	./.	./.
chr22	18369916	rs4819644	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,58:32:128:0.453:2	0/1:33,53:32:86:0.616:2	0/1:11,6:31:17:0.353:2	0/1:70,67:32:137:0.489:2	0/1:64,55:32:119:0.462:2	0/1:78,67:32:145:0.462:2	./.	0/1:79,90:33:169:0.533:2	./.	./.	0/1:82,84:33:166:0.506:2
chr22	18383707	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:33:5:0.800:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	18389526	rs371166227	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,59:33:107:0.551:2	./.
chr22	18389548	rs11913706	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,54:30:113:0.478:2	0/1:75,69:29:145:0.479:2	./.	./.	0/1:59,81:29:140:0.579:2	./.	./.	./.
chr22	18644597	rs143481018	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,10:32:161:0.062:2	./.	./.
chr22	18650682	rs3180408	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,93:32:191:0.487:2	./.	./.	0/1:2,192:32:194:0.990:2	./.	0/1:0,138:32:138:1.00:2	0/1:111,83:32:195:0.428:2
chr22	18655999	rs138527339	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:146,47:31:193:0.244:2	0/1:112,58:32:170:0.341:2	0/1:18,21:33:39:0.538:2	0/1:150,48:33:198:0.242:2	0/1:156,41:31:197:0.208:2	./.	./.	0/1:128,66:32:194:0.340:2	0/1:159,36:32:195:0.185:2	0/1:170,28:33:198:0.141:2	0/1:123,69:32:192:0.359:2
chr22	18834773	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,6:33:18:0.333:2	./.	./.	0/1:16,5:31:21:0.238:2	0/1:12,3:30:15:0.200:2	0/1:14,4:30:18:0.222:2	./.	./.	0/1:8,3:33:11:0.273:2	./.	0/1:14,4:31:18:0.222:2
chr22	18834809	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,3:30:8:0.375:2	./.	./.	./.	./.
chr22	18834830	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:30:5:0.600:2	./.
chr22	18834972	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,3:32:39:0.077:2	./.	./.	./.	./.	./.	./.	./.
chr22	18835134	rs201865381	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,6:30:34:0.176:2	./.	0/1:34,3:32:37:0.081:2	./.	0/1:33,6:32:39:0.154:2	./.	0/1:17,8:32:25:0.320:2	./.
chr22	18835139	rs199679028	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,5:33:27:0.185:2	./.	./.	0/1:39,11:33:50:0.220:2	./.	./.	./.	./.	./.	0/1:23,3:35:26:0.115:2
chr22	18835163	rs201662710	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,10:32:24:0.417:2	./.	0/1:18,3:32:21:0.143:2
chr22	18835221	rs62231276	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,12:32:12:1.00:2	0/1:0,12:33:13:1.00:2	./.	0/1:0,15:33:16:1.00:2	0/1:8,7:28:15:0.467:2	0/1:0,14:33:14:1.00:2	0/1:0,10:34:10:1.00:2	0/1:0,14:33:14:1.00:2	0/1:2,5:36:7:0.714:2	0/1:0,5:32:5:1.00:2	0/1:0,14:31:14:1.00:2
chr22	18835230	rs201134953	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,5:31:18:0.278:2	./.	./.	./.	./.	./.	./.	./.
chr22	18835298	rs200753959	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,7:32:9:0.778:2	./.	./.	0/1:7,6:32:13:0.462:2	0/1:8,5:32:13:0.385:2	./.	./.	./.	./.	./.	0/1:3,5:33:8:0.625:2
chr22	18835365	rs62231277	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.
chr22	18835523	rs200326813	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.
chr22	18835709	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,8:33:45:0.178:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	18835742	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:33:51:0.078:2
chr22	18835743	rs199959667	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,6:32:63:0.095:2	0/1:40,4:31:44:0.091:2	./.
chr22	18835751	.	A	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:31,13:30:44:0.295:2	0/1:32,8:31:40:0.200:2	0/1:1,4:30:5:0.800:2	./.	./.	0/1:40,4:31:44:0.091:2	0/1:37,5:28:42:0.119:2	0/1:59,6:29:65:0.092:2	0/1:46,14:31:60:0.233:2	0/1:26,18:29:44:0.409:2	0/1:43,11:31:54:0.204:2
chr22	18835754	rs371365085	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:31,12:29:43:0.279:2	0/1:28,11:30:40:0.282:2	./.	0/1:47,22:28:69:0.319:2	0/1:96,10:28:107:0.094:2	0/1:30,13:29:43:0.302:2	0/1:26,14:30:40:0.350:2	0/1:53,12:28:65:0.185:2	0/1:40,16:27:56:0.286:2	./.	0/1:38,14:29:52:0.269:2
chr22	18835784	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,3:32:42:0.071:2	0/1:28,3:32:31:0.097:2	./.
chr22	18835788	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,3:33:30:0.100:2	./.
chr22	18893902	rs408469	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,7:28:9:0.778:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	18893995	rs409155	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,6:30:9:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	18894144	rs41290429	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:163,4:33:167:0.024:2	./.	./.	0/1:193,5:33:198:0.025:2	./.	./.	./.	./.	./.	./.	./.
chr22	18896169	rs426065	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:55,42:33:97:0.433:2	0/1:50,24:32:74:0.324:2	0/1:4,5:31:9:0.556:2	./.	0/1:48,36:32:84:0.429:2	0/1:15,58:31:73:0.795:2	0/1:76,36:33:112:0.321:2	0/1:83,47:32:130:0.362:2	0/1:18,91:33:109:0.835:2	0/1:48,45:33:93:0.484:2	0/1:26,100:32:126:0.794:2
chr22	18896189	rs425576	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:57,40:33:97:0.412:2	0/1:58,28:32:86:0.326:2	0/1:5,8:32:13:0.615:2	./.	0/1:69,33:32:102:0.324:2	0/1:17,70:32:87:0.805:2	0/1:92,47:33:139:0.338:2	0/1:92,58:33:150:0.387:2	0/1:19,112:33:132:0.855:2	0/1:60,56:33:116:0.483:2	0/1:28,100:32:128:0.781:2
chr22	18897573	rs140459265	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,6:32:67:0.090:2	./.
chr22	18897609	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:29:55:0.074:2	./.
chr22	18897613	rs144754874	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:32:57:0.070:2	./.
chr22	18898523	rs41277586	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,16:31:54:0.296:2	./.	./.	./.	./.	./.	./.
chr22	18900750	rs372055	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,16:30:43:0.381:2	0/1:17,22:30:40:0.564:2	0/1:0,9:30:9:1.00:2	0/1:29,42:31:71:0.592:2	0/1:0,67:30:67:1.00:2	0/1:0,78:30:78:1.00:2	0/1:0,69:31:69:1.00:2	0/1:1,87:31:89:0.989:2	0/1:1,55:32:56:0.982:2	0/1:0,66:31:66:1.00:2	0/1:0,49:30:50:1.00:2
chr22	18900868	rs16983347	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,43:31:79:0.544:2	0/1:19,28:31:47:0.596:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	18901004	rs450046	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:80,54:32:134:0.403:2	0/1:36,27:32:63:0.429:2	0/1:0,13:32:13:1.00:2	0/1:0,179:33:179:1.00:2	0/1:0,181:32:181:1.00:2	0/1:0,182:32:182:1.00:2	0/1:0,182:33:182:1.00:2	0/1:0,174:33:174:1.00:2	0/1:0,177:33:177:1.00:2	0/1:0,134:33:134:1.00:2	0/1:0,120:33:120:1.00:2
chr22	18904414	rs455072	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:65,53:28:118:0.449:2	0/1:48,36:28:84:0.429:2	0/1:0,14:28:14:1.00:2	0/1:0,186:28:186:1.00:2	0/1:0,185:28:185:1.00:2	0/1:0,169:29:169:1.00:2	0/1:0,189:28:189:1.00:2	0/1:3,178:28:181:0.983:2	0/1:0,151:29:152:1.00:2	0/1:0,116:27:116:1.00:2	0/1:0,93:27:93:1.00:2
chr22	18905842	rs2870983	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,74:30:174:0.425:2	./.	./.	./.	./.	./.	./.
chr22	18905882	rs2904550	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,90:31:169:0.533:2	./.	./.	./.
chr22	18905964	rs2904552	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,45:31:75:0.600:2	./.	./.	./.	./.	./.
chr22	18905977	rs2238731	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,16:30:55:0.291:2	./.	./.	./.	./.
chr22	18905978	rs16983466	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,33:31:63:0.524:2	./.	./.	./.	./.	./.	./.	./.
chr22	18907124	rs1076466	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:31,36:32:67:0.537:2	0/1:31,19:32:50:0.380:2	./.	./.	0/1:68,79:32:147:0.537:2	0/1:65,53:31:118:0.449:2	0/1:148,5:34:153:0.033:2	0/1:64,69:32:133:0.519:2	./.	0/1:2,87:32:89:0.978:2	./.
chr22	18907156	rs117152817	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,73:32:170:0.429:2	./.	./.	./.	./.
chr22	18908875	rs1808320	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:36,38:32:74:0.514:2	0/1:23,25:32:48:0.521:2	./.	0/1:2,125:32:127:0.984:2	0/1:0,184:32:185:1.00:2	0/1:76,76:33:152:0.500:2	./.	0/1:91,61:33:152:0.401:2	./.	0/1:1,110:33:111:0.991:2	./.
chr22	18910355	rs5747933	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,55:30:108:0.509:2	0/1:79,93:31:172:0.541:2	./.	./.	./.	./.
chr22	18912677	rs11913840	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,64:31:117:0.547:2	0/1:54,65:31:119:0.546:2	./.	./.	./.	./.	./.	./.
chr22	18912678	rs4819756	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,30:31:60:0.500:2	0/1:24,17:31:41:0.415:2	./.	0/1:0,114:31:114:1.00:2	0/1:1,111:31:112:0.991:2	0/1:40,58:30:98:0.592:2	0/1:57,52:29:109:0.477:2	0/1:45,43:30:88:0.489:2	./.	0/1:0,67:30:67:1.00:2	./.
chr22	18913205	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	18918676	rs150288279	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,12:29:25:0.480:2
chr22	19026613	rs2072123	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,39:30:83:0.470:2	./.	./.	./.	./.	./.
chr22	19028619	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:31:86:0.047:2	./.	./.	./.
chr22	19109710	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:30:71:0.056:2	./.	./.	./.	./.	./.
chr22	19119490	rs142906174	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	19122665	rs2240111	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,68:32:119:0.571:2	./.	./.
chr22	19124865	rs17743887	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,41:31:122:0.336:2	./.	./.	./.	./.	./.	./.	./.
chr22	19124938	rs117976088	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,50:33:91:0.549:2	./.	./.
chr22	19127428	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:30:94:0.043:2	./.	./.	./.
chr22	19132061	rs2298274	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,35:29:63:0.556:2	0/1:37,35:30:72:0.486:2	./.	./.	./.	./.
chr22	19164627	rs370902285	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:32:135:0.030:2	./.	./.	./.
chr22	19175103	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:33:196:0.020:2	./.	./.	./.	./.
chr22	19175561	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:33:133:0.030:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	19183787	rs1633399	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,26:31:64:0.406:2	./.	0/1:45,34:31:79:0.430:2	0/1:40,35:31:75:0.467:2	./.	./.	./.
chr22	19184095	rs1061325	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,15:29:33:0.469:2	0/1:12,11:29:23:0.478:2	0/1:4,5:30:9:0.556:2	0/1:34,39:28:73:0.534:2	0/1:46,24:28:70:0.343:2	0/1:29,30:25:59:0.508:2	0/1:49,32:27:81:0.395:2	0/1:51,24:27:75:0.320:2	./.	0/1:25,33:26:58:0.569:2	0/1:1,46:27:47:0.979:2
chr22	19195680	rs807547	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,9:32:20:0.450:2	./.	0/1:10,11:33:21:0.524:2	0/1:21,12:33:33:0.364:2	./.	./.	./.
chr22	19197896	rs698423	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,33:29:73:0.452:2	0/1:17,13:30:30:0.433:2	0/1:7,5:27:12:0.417:2	0/1:54,49:30:103:0.476:2	0/1:92,72:29:164:0.439:2	0/1:57,53:30:110:0.482:2	0/1:101,74:28:175:0.423:2	0/1:72,83:29:155:0.535:2	0/1:61,69:30:130:0.531:2	0/1:0,76:30:76:1.00:2	0/1:0,79:29:79:1.00:2
chr22	19197949	rs712952	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,69:32:148:0.466:2	./.	0/1:86,59:32:145:0.407:2	0/1:71,85:31:156:0.545:2	./.	./.	./.
chr22	19207491	rs35398725	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,46:33:80:0.575:2	./.	./.	./.	./.	./.	./.	./.
chr22	19213138	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,5:24:37:0.135:2	./.	./.	./.
chr22	19221102	rs373661036	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,24:32:64:0.375:2
chr22	19223333	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:33:143:0.028:2	./.	./.	./.	./.	./.
chr22	19223352	rs807459	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,44:31:125:0.352:2	./.	0/1:49,61:32:110:0.555:2	0/1:86,60:32:146:0.411:2	./.	./.	./.
chr22	19279194	rs3747060	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	0/1:0,2:30:2:1.00:2	./.	0/1:0,5:28:5:1.00:2	./.	./.	./.	./.
chr22	19363172	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:33:189:0.021:2	./.	./.	./.	./.
chr22	19420109	rs1128399	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,6:31:23:0.261:2	./.	./.	0/1:10,5:32:15:0.333:2	./.	./.	0/1:6,3:26:9:0.333:2
chr22	19422339	rs141770264	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:33:9:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	19423250	rs7575	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:32:12:0.583:2	./.	0/1:29,21:32:50:0.420:2	./.	./.	0/1:53,40:31:93:0.430:2	./.	./.	0/1:67,31:31:98:0.316:2
chr22	19435247	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,6:26:124:0.048:2	./.	./.	./.
chr22	19435250	rs200087123	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:131,17:22:148:0.115:2	0/1:85,6:22:91:0.066:2	0/1:149,10:20:159:0.063:2	0/1:121,15:22:136:0.110:2	0/1:87,7:22:94:0.074:2	./.	./.
chr22	19467717	rs4141527	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,63:31:116:0.543:2	./.	./.	0/1:33,28:31:61:0.459:2
chr22	19471473	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,6:32:99:0.061:2	./.	./.	./.
chr22	19486600	rs9618586	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,67:30:67:1.00:2	0/1:33,39:31:72:0.542:2	./.	./.	0/1:0,68:30:68:1.00:2
chr22	19504133	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:77,5:31:82:0.061:2	./.	./.	./.	./.	./.	./.	./.
chr22	19511925	rs885985	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,3:31:3:1.00:2	./.	./.	0/1:0,7:28:7:1.00:2	./.	0/1:0,7:27:7:1.00:2	./.	0/1:1,5:26:6:0.833:2	./.	0/1:0,3:26:3:1.00:2	./.
chr22	19748690	rs72646953	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,59:30:112:0.527:2	./.	./.	./.	./.	./.	./.
chr22	19750773	rs41298814	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,79:33:81:0.975:2	0/1:62,40:32:102:0.392:2	./.	0/1:79,62:32:141:0.440:2	./.	./.	0/1:43,49:33:92:0.533:2	./.
chr22	19751829	rs2301558	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:6,4:32:10:0.400:2	0/1:8,4:32:12:0.333:2	./.	./.	./.	./.	./.	0/1:25,22:32:47:0.468:2	0/1:24,23:33:47:0.489:2	./.	./.
chr22	19753354	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:35:56:0.071:2	./.
chr22	19766782	rs4819522	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:27,25:31:52:0.481:2	0/1:15,17:32:32:0.531:2	./.	./.	./.	./.	./.	0/1:44,26:31:70:0.371:2	./.	./.	./.
chr22	19789541	rs2073770	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,7:31:27:0.259:2	./.	./.	0/1:9,4:31:13:0.308:2	./.	./.	0/1:16,11:31:27:0.407:2	./.
chr22	19808167	rs142592326	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,33:27:88:0.375:2	./.	./.	./.	./.	./.	./.
chr22	19808769	rs5748449	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,34:30:62:0.548:2	0/1:18,25:30:43:0.581:2	./.	0/1:19,19:30:39:0.500:2	0/1:21,31:29:52:0.596:2	./.	./.	./.
chr22	19839438	rs17745302	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,7:31:13:0.538:2	0/1:6,6:31:12:0.500:2	./.	./.	./.	./.	./.	./.	0/1:16,5:31:21:0.238:2	./.	0/1:8,7:30:15:0.467:2
chr22	19865928	rs190301927	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,98:30:177:0.554:2	./.	./.	./.	./.
chr22	19867771	rs1139795	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:27,19:31:46:0.413:2	0/1:16,15:31:32:0.484:2	./.	./.	0/1:56,31:31:87:0.356:2	./.	0/1:36,43:32:79:0.544:2	./.	0/1:34,26:32:60:0.433:2	./.	0/1:32,14:30:46:0.304:2
chr22	19868218	rs1139793	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:31:54:1.00:2	0/1:0,21:31:21:1.00:2	0/1:5,6:31:11:0.545:2	0/1:33,25:32:58:0.431:2	0/1:2,48:31:50:0.960:2	./.	0/1:20,14:30:34:0.412:2	0/1:34,21:31:55:0.382:2	0/1:0,38:32:38:1.00:2	0/1:15,11:31:26:0.423:2	0/1:3,33:30:36:0.917:2
chr22	19882984	rs5992495	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:30:5:0.600:2	0/1:37,33:30:70:0.471:2	0/1:62,23:28:85:0.271:2	./.	0/1:57,30:29:87:0.345:2	0/1:67,28:29:95:0.295:2	./.	./.	./.
chr22	19898886	rs9606176	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:20,30:30:50:0.600:2	0/1:12,15:32:27:0.556:2	./.	./.	./.	./.	0/1:19,14:31:33:0.424:2	./.	./.	./.	./.
chr22	19906511	rs11541479	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,38:30:59:0.644:2	0/1:22,18:28:40:0.450:2	./.	0/1:20,29:31:49:0.592:2	0/1:21,38:31:59:0.644:2	./.	./.	./.
chr22	19907099	rs5748469	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:11,21:30:32:0.656:2	0/1:6,15:31:21:0.714:2	./.	0/1:29,21:31:50:0.420:2	0/1:43,18:31:61:0.295:2	0/1:0,39:31:39:1.00:2	0/1:42,29:32:72:0.408:2	0/1:35,22:30:57:0.386:2	0/1:22,19:31:41:0.463:2	./.	./.
chr22	19907118	rs5748470	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,20:32:32:0.625:2	0/1:6,10:31:16:0.625:2	./.	0/1:0,42:32:42:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,59:33:59:1.00:2	0/1:1,50:32:51:0.980:2	0/1:21,13:34:34:0.382:2	./.	./.
chr22	19919897	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,4:32:139:0.029:2	./.	./.	./.	./.	./.
chr22	19950235	rs4633	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,40:31:87:0.465:2	0/1:0,141:31:141:1.00:2	0/1:1,70:31:71:0.986:2	./.	0/1:1,99:31:100:0.990:2	0/1:41,33:32:74:0.446:2	./.	0/1:0,52:32:52:1.00:2
chr22	19950268	rs740602	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,59:31:99:0.596:2	./.	./.	./.	./.
chr22	19951207	rs4818	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:31:50:1.00:2	0/1:1,35:32:36:0.972:2	0/1:8,9:32:18:0.529:2	0/1:46,47:33:93:0.505:2	./.	./.	0/1:41,38:32:79:0.481:2	./.	0/1:43,39:33:83:0.476:2	0/1:0,42:32:43:1.00:2	./.
chr22	19951271	rs4680	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,27:31:56:0.482:2	0/1:0,83:31:83:1.00:2	0/1:0,50:31:50:1.00:2	./.	0/1:3,58:31:61:0.951:2	0/1:23,22:32:45:0.489:2	./.	0/1:0,34:32:34:1.00:2
chr22	19951804	rs769224	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,76:32:146:0.521:2	./.	./.	./.
chr22	19951897	rs4646315	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,3:33:49:0.061:2	0/1:3,70:32:73:0.959:2	0/1:3,51:32:54:0.944:2	0/1:27,43:32:70:0.614:2	./.	0/1:18,22:33:40:0.550:2	./.	./.
chr22	19954847	rs4646318	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:90,41:32:131:0.313:2	./.	./.	0/1:78,50:32:128:0.391:2	./.	./.	./.
chr22	19959473	rs165815	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,21:31:21:1.00:2	0/1:0,13:33:13:1.00:2	./.	0/1:1,31:32:32:0.969:2	0/1:16,6:30:22:0.273:2	0/1:0,24:32:24:1.00:2	0/1:0,21:32:21:1.00:2	0/1:19,14:32:33:0.424:2	0/1:0,27:33:27:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,20:33:20:1.00:2
chr22	19959955	rs2073744	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,55:32:55:1.00:2	0/1:0,54:31:54:1.00:2	./.	0/1:0,74:32:74:1.00:2	0/1:43,37:32:80:0.463:2	0/1:1,91:32:93:0.989:2	0/1:0,70:32:70:1.00:2	0/1:45,46:32:91:0.505:2	0/1:0,76:33:76:1.00:2	0/1:0,73:31:73:1.00:2	0/1:0,63:32:63:1.00:2
chr22	19961745	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:31:36:0.111:2
chr22	19967480	rs74544696	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,19:31:53:0.358:2	./.	./.	./.
chr22	19968750	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:114,6:31:120:0.050:2	./.	./.	./.	./.	./.	./.
chr22	19968971	rs2073748	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.
chr22	19969075	rs2073747	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:25:7:1.00:2	0/1:0,5:26:5:1.00:2	0/1:0,9:26:9:1.00:2	./.	0/1:0,3:29:3:1.00:2	./.	0/1:0,8:25:8:1.00:2	0/1:0,7:29:7:1.00:2
chr22	19969106	rs2240717	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,9:27:12:0.750:2	./.	0/1:1,16:25:17:0.941:2	./.	./.	./.	0/1:5,5:26:10:0.500:2	0/1:5,5:29:10:0.500:2
chr22	19978255	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:30:101:0.040:2	./.	./.
chr22	20049110	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:135,4:33:139:0.029:2	./.	./.	./.	./.	./.	./.
chr22	20050957	rs73389745	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,22:31:42:0.524:2	./.	./.	./.	./.
chr22	20074006	rs35987994	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,34:28:69:0.493:2	./.	./.	./.	./.	./.	./.
chr22	20094894	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:32:65:0.062:2	./.	./.	./.	./.	./.
chr22	20117046	rs2871053	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,19:28:40:0.475:2	./.	./.	./.	./.	./.	./.
chr22	20119566	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:34:4:0.500:2	./.	./.
chr22	20126741	rs61737216	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,99:30:199:0.497:2	./.	./.	./.	./.	./.	./.
chr22	20130978	rs368888508	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.
chr22	20131115	rs9605069	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:31:5:0.800:2	./.
chr22	20131116	rs80226867	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,6:28:7:0.857:2	./.	./.	./.	./.	./.	./.
chr22	20134739	rs9605070	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,6:26:10:0.600:2	0/1:5,5:30:10:0.500:2	./.	0/1:15,3:30:18:0.167:2	0/1:2,6:30:8:0.750:2	./.	./.	./.	./.	0/1:6,5:30:12:0.455:2	./.
chr22	20136263	rs175181	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,75:30:75:1.00:2	./.	0/1:42,42:31:84:0.500:2	./.	0/1:33,29:32:62:0.468:2	0/1:14,18:29:32:0.563:2
chr22	20136379	rs4819867	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,3:27:4:0.750:2	./.	./.	0/1:4,4:25:8:0.500:2	./.	./.	0/1:5,3:30:8:0.375:2	0/1:7,4:30:11:0.364:2	./.	0/1:2,6:31:8:0.750:2	./.
chr22	20137322	rs73150876	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:110,7:31:117:0.060:2	0/1:59,9:31:68:0.132:2	./.	0/1:131,11:32:142:0.077:2	0/1:111,17:30:128:0.133:2	0/1:127,26:30:153:0.170:2	0/1:138,20:33:158:0.127:2	0/1:143,14:31:157:0.089:2	0/1:144,18:29:162:0.111:2	0/1:141,17:32:159:0.108:2	0/1:112,27:32:139:0.194:2
chr22	20137512	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,5:25:46:0.109:2	./.	./.	./.	0/1:47,4:29:51:0.078:2	./.	./.	./.
chr22	20137723	rs139050179	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:15,13:33:28:0.464:2	./.	./.	0/1:17,23:32:40:0.575:2	0/1:14,10:33:24:0.417:2	./.	./.
chr22	20138105	rs73391926	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:16,18:30:34:0.529:2	0/1:6,9:30:15:0.600:2	./.	0/1:15,16:30:31:0.516:2	0/1:0,19:30:19:1.00:2	./.	0/1:24,5:31:29:0.172:2	0/1:12,9:31:21:0.429:2	0/1:20,14:31:34:0.412:2	0/1:11,8:32:19:0.421:2	./.
chr22	20229931	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:32:185:0.022:2	./.	./.	./.	./.	./.
chr22	20303671	rs1056818	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,3:33:62:0.048:2	./.	./.	0/1:29,8:31:37:0.216:2	./.	./.	./.	./.
chr22	20303684	rs371189692	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,5:28:33:0.152:2	./.	./.	./.	./.
chr22	20307256	rs7235	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,142:33:146:0.973:2	0/1:3,58:32:61:0.951:2	0/1:2,20:33:22:0.909:2	0/1:9,151:33:160:0.944:2	0/1:83,81:32:164:0.494:2	0/1:66,84:32:150:0.560:2	./.	./.	0/1:2,147:34:149:0.987:2	./.	0/1:7,145:32:152:0.954:2
chr22	20366405	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:32,38:31:70:0.543:2	0/1:60,41:31:101:0.406:2	./.	./.	0/1:130,27:31:159:0.172:2	./.	0/1:3,60:30:63:0.952:2	./.	./.	0/1:36,28:31:64:0.438:2	0/1:34,31:31:65:0.477:2
chr22	20366429	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,21:31:38:0.553:2	./.
chr22	20366437	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,17:29:31:0.548:2	./.
chr22	20366461	rs199549402	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:153,6:32:159:0.038:2	0/1:9,6:32:15:0.400:2	./.	0/1:15,15:31:31:0.500:2	./.	./.	0/1:12,7:32:19:0.368:2
chr22	20367356	.	G	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:30:10:0.300:2	./.	./.	0/1:93,4:30:97:0.041:2	0/1:80,8:27:88:0.091:2	./.	./.	./.	./.
chr22	20456630	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:82,35:31:117:0.299:2	0/1:54,13:32:67:0.194:2	./.	0/1:50,63:31:113:0.558:2	./.	./.	./.	./.	./.	./.	./.
chr22	20456696	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	20456765	rs374395444	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,161:31:195:0.826:2	0/1:23,93:31:116:0.802:2	0/1:14,16:29:30:0.533:2	0/1:79,114:31:193:0.591:2	0/1:134,58:30:192:0.302:2	0/1:140,49:31:189:0.259:2	0/1:92,105:31:197:0.533:2	0/1:48,144:31:192:0.750:2	0/1:103,95:31:198:0.480:2	0/1:135,55:31:190:0.289:2	0/1:147,51:30:199:0.258:2
chr22	20456851	rs199627467	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:154,40:32:194:0.206:2	0/1:146,45:32:191:0.236:2	0/1:51,22:30:73:0.301:2	./.	0/1:119,74:32:193:0.383:2	0/1:157,34:32:191:0.178:2	0/1:99,99:32:198:0.500:2	0/1:109,88:32:197:0.447:2	0/1:103,92:33:195:0.472:2	0/1:148,50:32:198:0.253:2	0/1:146,50:32:196:0.255:2
chr22	20457060	rs200551182	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:115,61:31:176:0.347:2	0/1:82,54:32:136:0.397:2	0/1:17,22:30:39:0.564:2	0/1:98,6:34:104:0.058:2	0/1:97,91:31:188:0.484:2	0/1:57,133:31:190:0.700:2	0/1:42,131:32:173:0.757:2	0/1:142,49:32:191:0.257:2	0/1:112,78:33:190:0.411:2	0/1:156,37:32:194:0.192:2	0/1:49,141:32:190:0.742:2
chr22	20457204	rs141165655	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:103,81:30:184:0.440:2	0/1:90,74:31:164:0.451:2	0/1:20,45:30:65:0.692:2	./.	0/1:87,107:30:194:0.552:2	0/1:59,128:30:187:0.684:2	0/1:96,96:30:192:0.500:2	0/1:125,69:31:195:0.356:2	0/1:115,76:30:192:0.398:2	0/1:109,79:30:188:0.420:2	0/1:55,130:30:185:0.703:2
chr22	20457383	rs199673858	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,12:31:141:0.085:2	0/1:61,6:32:67:0.090:2	./.	./.	./.	0/1:7,5:31:12:0.417:2	./.	0/1:159,5:28:164:0.030:2	0/1:179,5:30:184:0.027:2	0/1:176,11:31:187:0.059:2	0/1:12,15:32:27:0.556:2
chr22	20457485	rs200505008	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,34:29:76:0.447:2	./.	./.	./.	./.	./.	./.	./.
chr22	20457561	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,25:30:126:0.198:2	0/1:43,20:30:63:0.317:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	20457793	rs199716798	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:156,41:31:197:0.208:2	./.	./.	./.	./.	./.	./.	./.
chr22	20458029	rs201532727	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:70,7:32:77:0.091:2	0/1:85,102:32:187:0.545:2	./.	./.	./.	./.	./.	./.	./.
chr22	20458331	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,47:33:177:0.266:2	./.	./.	./.	./.
chr22	20458542	rs201889462	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,46:33:192:0.240:2	./.	./.	./.	./.
chr22	20458656	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	20458830	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,43:32:131:0.328:2	./.	./.	./.	./.
chr22	20459675	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,5:34:6:0.833:2	./.
chr22	20460126	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,11:29:25:0.440:2	./.	./.	./.	./.
chr22	20460526	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:122,40:29:162:0.247:2	0/1:80,22:31:102:0.216:2	./.	./.	./.	0/1:149,46:29:195:0.236:2	./.	./.	./.	./.	0/1:137,43:31:183:0.239:2
chr22	20460719	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant6-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:11,5:31:16:0.313:2	./.	./.	./.	0/1:44,18:29:62:0.290:2	./.	./.	./.	./.	0/1:29,3:32:32:0.094:2
chr22	20461612	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,45:29:175:0.257:2	./.
chr22	20718525	rs2277833	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,106:32:166:0.639:2	0/1:65,126:32:191:0.660:2	0/1:20,31:32:51:0.608:2	0/1:89,108:32:198:0.548:2	0/1:149,48:32:197:0.244:2	./.	./.	0/1:85,110:31:195:0.564:2	0/1:123,72:32:195:0.369:2	0/1:137,44:32:182:0.243:2	0/1:85,107:32:192:0.557:2
chr22	20723832	rs75178771	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,9:32:19:0.474:2	./.	0/1:155,6:33:161:0.037:2	./.	./.	0/1:169,10:32:179:0.056:2	./.	./.	./.
chr22	20729885	rs148868491	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,68:32:187:0.364:2	./.	./.
chr22	20760515	rs200156770	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,7:19:50:0.140:2	0/1:42,6:20:48:0.125:2	./.	./.	./.	./.	./.
chr22	20761063	rs2228236	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,33:32:70:0.471:2	./.	./.	0/1:0,49:32:49:1.00:2	./.	./.
chr22	20780091	rs759610	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:29:3:1.00:2	./.	./.	0/1:0,3:28:3:1.00:2
chr22	20780097	rs759609	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	0/1:0,2:29:2:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,3:34:3:1.00:2	./.	0/1:0,4:25:4:1.00:2
chr22	20796505	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:31:48:0.083:2	./.	./.	./.	./.	./.
chr22	20862646	rs5750324	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,28:29:28:1.00:2	0/1:0,16:30:16:1.00:2	0/1:2,6:30:8:0.750:2	0/1:25,20:30:45:0.444:2	0/1:19,21:29:40:0.525:2	0/1:24,24:30:48:0.500:2	./.	0/1:0,45:30:45:1.00:2	0/1:22,29:31:51:0.569:2	0/1:0,23:30:23:1.00:2	0/1:0,51:29:51:1.00:2
chr22	20936946	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.
chr22	20937601	rs165643	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,11:31:16:0.688:2	0/1:1,4:32:5:0.800:2	./.	0/1:12,9:32:21:0.429:2	0/1:4,14:30:18:0.778:2	./.	0/1:15,13:31:28:0.464:2	./.	./.	./.	./.
chr22	21044637	rs71312777	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr22	21044663	rs10427829	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,34:32:68:0.500:2	0/1:2,3:32:5:0.600:2	0/1:25,11:32:36:0.306:2	0/1:17,4:34:21:0.190:2	./.	./.
chr22	21044848	rs5751736	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,7:30:14:0.500:2	0/1:0,38:30:38:1.00:2	0/1:37,27:31:64:0.422:2	0/1:22,26:28:48:0.542:2	0/1:0,59:30:59:1.00:2	0/1:51,31:30:82:0.378:2	0/1:29,37:30:66:0.561:2	0/1:26,20:30:46:0.435:2	./.
chr22	21045337	rs201856044	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:29:5:0.800:2	./.	./.	./.
chr22	21045398	rs201064640	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:32:11:0.364:2	./.	./.	./.
chr22	21045405	rs72490655	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:32:10:0.300:2	./.	./.	./.
chr22	21063672	rs200776928	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:7,50:29:57:0.877:2	0/1:2,34:31:36:0.944:2	0/1:31,3:31:34:0.088:2	./.	0/1:186,4:33:190:0.021:2	0/1:185,12:29:197:0.061:2	./.	0/1:174,17:31:191:0.089:2	0/1:173,20:31:193:0.104:2	0/1:163,7:32:171:0.041:2	0/1:2,29:29:31:0.935:2
chr22	21064994	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:193,4:33:197:0.020:2	./.	./.	./.	./.	./.	./.	./.
chr22	21065034	rs150339960	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,40:32:192:0.208:2	./.
chr22	21065645	rs444310	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:26:5:0.600:2	0/1:1,4:33:5:0.800:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,8:32:8:1.00:2
chr22	21066789	rs5996654	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:42,137:33:179:0.765:2	0/1:24,75:32:99:0.758:2	0/1:30,5:32:35:0.143:2	./.	0/1:143,50:33:193:0.259:2	0/1:134,53:32:187:0.283:2	./.	0/1:133,51:32:184:0.277:2	0/1:120,74:33:194:0.381:2	0/1:127,60:32:187:0.321:2	0/1:39,132:31:171:0.772:2
chr22	21066897	rs1135929	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:28,33:30:61:0.541:2	0/1:17,25:30:42:0.595:2	0/1:13,6:30:19:0.316:2	./.	0/1:126,15:29:141:0.106:2	0/1:136,25:29:161:0.155:2	./.	0/1:142,24:30:166:0.145:2	0/1:105,21:31:126:0.167:2	0/1:95,10:30:105:0.095:2	0/1:17,34:30:52:0.667:2
chr22	21072007	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:35:186:0.022:2
chr22	21072992	rs143539146	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,58:32:115:0.504:2	./.	./.	./.	./.	./.	./.	./.
chr22	21072999	rs148493225	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:33:179:0.022:2
chr22	21073055	.	G	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:100,6:28:106:0.057:2	./.	0/1:132,6:25:138:0.043:2	0/1:180,10:28:190:0.053:2	0/1:167,8:28:175:0.046:2	0/1:134,14:28:149:0.095:2	0/1:179,7:26:186:0.038:2
chr22	21073071	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,5:31:149:0.034:2	./.
chr22	21081550	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,3:33:38:0.079:2	./.	./.
chr22	21083705	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:33:188:0.021:2	./.	./.
chr22	21096947	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:34:199:0.020:2	./.	./.	./.
chr22	21107433	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:31:92:0.043:2	./.
chr22	21133871	rs372976032	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,4:30:88:0.045:2	./.	./.	./.	./.	./.	./.	./.
chr22	21138428	rs147046923	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,22:31:74:0.297:2	0/1:28,13:31:41:0.317:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	21141300	rs4675	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,82:32:83:0.988:2	0/1:1,58:32:59:0.983:2	0/1:4,3:32:7:0.429:2	./.	0/1:76,68:32:144:0.472:2	0/1:49,42:32:91:0.462:2	./.	0/1:94,82:31:176:0.466:2	0/1:60,52:33:112:0.464:2	0/1:52,45:32:97:0.464:2	0/1:1,113:31:114:0.991:2
chr22	21158646	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:30:88:0.045:2	./.	./.	./.	./.	./.
chr22	21167787	rs165854	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,28:31:30:0.933:2	0/1:0,23:32:23:1.00:2	0/1:2,2:33:4:0.500:2	./.	0/1:23,21:31:44:0.477:2	0/1:23,19:31:43:0.452:2	./.	0/1:15,23:30:38:0.605:2	0/1:17,18:32:35:0.514:2	0/1:27,10:31:37:0.270:2	0/1:0,43:32:43:1.00:2
chr22	21213416	rs1061064	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,5:32:18:0.278:2	0/1:0,99:33:99:1.00:2	0/1:55,54:31:109:0.495:2	0/1:51,52:33:103:0.505:2	0/1:2,110:32:112:0.982:2	0/1:73,57:32:130:0.438:2	0/1:64,38:34:102:0.373:2	0/1:31,34:32:65:0.523:2	./.
chr22	21213457	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:31:63:0.063:2	./.	./.	./.	./.	./.
chr22	21327589	rs178264	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,23:30:37:0.622:2	0/1:22,16:31:38:0.421:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	21328568	rs56179977	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,52:31:85:0.612:2	./.	./.	./.	./.
chr22	21330787	rs7285694	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:32:6:1.00:2	./.	0/1:11,11:29:22:0.500:2	./.	0/1:12,13:32:26:0.520:2	0/1:25,16:28:41:0.390:2	./.	0/1:21,10:31:31:0.323:2	0/1:5,7:31:12:0.583:2
chr22	21330825	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,5:30:16:0.313:2	./.	./.	./.	./.	./.	./.
chr22	21331032	rs139501949	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,10:33:26:0.385:2	0/1:8,7:31:15:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	21331043	rs178269	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:32:22:1.00:2	0/1:0,12:29:12:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,25:29:25:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,38:30:38:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,16:32:16:1.00:2
chr22	21335259	rs178278	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,20:30:20:1.00:2	./.	0/1:100,80:29:180:0.444:2	./.	0/1:88,103:30:191:0.539:2	0/1:106,78:30:185:0.424:2	0/1:2,183:29:186:0.989:2	0/1:71,98:29:170:0.580:2	0/1:101,69:29:170:0.406:2
chr22	21337325	rs13054014	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,35:31:89:0.393:2	0/1:36,50:31:86:0.581:2	./.	./.	./.	./.	./.	./.
chr22	21348914	rs4822790	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:62,62:30:124:0.500:2	./.	0/1:50,54:31:104:0.519:2	./.	0/1:32,33:32:65:0.508:2	./.	./.
chr22	21349676	rs412470	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,28:31:44:0.636:2	0/1:29,19:31:48:0.396:2	0/1:35,15:29:50:0.300:2	./.	0/1:31,30:31:61:0.492:2	0/1:13,12:32:25:0.480:2	./.	./.
chr22	21349677	rs376419	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,28:31:44:0.636:2	0/1:29,19:30:48:0.396:2	0/1:35,15:29:50:0.300:2	./.	0/1:31,30:30:61:0.492:2	0/1:14,12:32:26:0.462:2	./.	./.
chr22	21351018	rs143758478	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,43:31:111:0.387:2	./.	0/1:31,42:32:73:0.575:2	./.
chr22	21354970	rs426938	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,28:32:28:1.00:2	0/1:2,5:33:7:0.714:2	0/1:48,26:33:74:0.351:2	0/1:25,20:32:45:0.444:2	0/1:41,21:32:62:0.339:2	0/1:2,54:32:56:0.964:2	0/1:50,32:32:84:0.390:2	0/1:39,42:33:81:0.519:2	0/1:0,50:31:50:1.00:2	0/1:0,42:30:42:1.00:2
chr22	21370237	rs2007013	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,24:28:65:0.369:2	0/1:18,22:28:40:0.550:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	21372298	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,4:31:102:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr22	21372314	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,49:31:115:0.426:2	./.	./.	./.	./.	./.
chr22	21377301	rs1548411	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,9:32:18:0.500:2	0/1:3,133:32:138:0.978:2	0/1:0,159:32:159:1.00:2	0/1:90,67:31:157:0.427:2	0/1:103,85:33:189:0.452:2	0/1:0,172:32:174:1.00:2	0/1:0,167:33:167:1.00:2	0/1:78,40:32:118:0.339:2	0/1:65,62:32:127:0.488:2
chr22	21377650	rs2277838	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,5:32:6:0.833:2	0/1:19,16:32:35:0.457:2	./.	./.	0/1:20,12:31:32:0.375:2	./.	0/1:16,14:31:30:0.467:2	./.	./.
chr22	21384283	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:33:89:0.045:2	./.	./.	./.	./.
chr22	21384578	rs2270384	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,97:31:175:0.554:2	0/1:50,64:32:114:0.561:2	0/1:53,40:31:93:0.430:2	0/1:60,44:31:104:0.423:2
chr22	21385843	rs2072549	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,5:32:6:0.833:2	0/1:18,18:32:36:0.500:2	./.	./.	0/1:18,8:32:26:0.308:2	./.	0/1:11,12:33:23:0.522:2	./.	./.
chr22	21385985	rs402931	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:34,27:31:61:0.443:2	0/1:14,15:31:29:0.517:2	./.	./.	./.	./.	0/1:28,31:31:59:0.525:2	./.	./.	0/1:32,32:31:64:0.500:2	0/1:13,20:29:33:0.606:2
chr22	21386019	rs2072550	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,18:30:44:0.409:2	0/1:10,30:32:40:0.750:2	0/1:31,26:31:57:0.456:2	0/1:20,9:31:29:0.310:2
chr22	21400282	rs12170538	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,61:30:135:0.452:2	./.	0/1:67,66:30:133:0.496:2	0/1:75,74:31:149:0.497:2	./.	0/1:63,80:31:143:0.559:2	./.	./.
chr22	21403303	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,29:29:118:0.248:2	./.	./.	./.	./.
chr22	21403360	rs201821840	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:152,37:30:189:0.196:2	./.	./.	0/1:154,33:30:187:0.176:2	0/1:149,35:29:184:0.190:2	./.	0/1:159,21:30:181:0.117:2	./.
chr22	21403375	rs28504593	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:153,28:31:181:0.155:2	0/1:92,28:32:120:0.233:2	./.	0/1:151,30:31:181:0.166:2	./.	0/1:133,51:31:185:0.277:2	0/1:154,32:31:186:0.172:2	0/1:141,37:31:178:0.208:2	./.	0/1:158,27:31:185:0.146:2	0/1:154,28:30:182:0.154:2
chr22	21403376	rs28450680	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:155,27:30:182:0.148:2	0/1:90,28:32:118:0.237:2	./.	0/1:158,30:31:188:0.160:2	./.	0/1:137,51:31:188:0.271:2	0/1:155,31:31:186:0.167:2	0/1:145,37:31:182:0.203:2	./.	0/1:159,27:31:186:0.145:2	0/1:159,28:31:187:0.150:2
chr22	21480582	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:159,11:29:170:0.065:2	./.	0/1:158,29:31:187:0.155:2	0/1:181,12:32:193:0.062:2	0/1:180,14:32:195:0.072:2	0/1:187,10:30:197:0.051:2	0/1:134,26:31:160:0.163:2	0/1:181,7:32:188:0.037:2
chr22	21480586	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:163,11:31:174:0.063:2	./.	0/1:157,28:31:185:0.151:2	0/1:177,12:30:189:0.063:2	0/1:177,14:30:191:0.073:2	0/1:186,10:30:196:0.051:2	0/1:134,27:31:161:0.168:2	0/1:175,7:31:182:0.038:2
chr22	21480616	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:106,36:28:143:0.254:2	0/1:74,23:31:97:0.237:2	./.	0/1:94,54:30:148:0.365:2	0/1:105,17:30:122:0.139:2	0/1:107,35:30:142:0.246:2	0/1:80,35:30:115:0.304:2	0/1:134,12:30:146:0.082:2	0/1:110,26:31:136:0.191:2	./.	0/1:97,25:29:122:0.205:2
chr22	21480619	.	T	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:115,27:30:145:0.190:2	0/1:76,23:32:99:0.232:2	0/1:12,5:27:17:0.294:2	./.	0/1:98,11:28:110:0.101:2	0/1:120,12:29:133:0.091:2	0/1:93,7:32:101:0.070:2	0/1:107,28:29:137:0.207:2	0/1:105,23:30:128:0.180:2	0/1:85,46:30:131:0.351:2	0/1:96,18:29:115:0.158:2
chr22	21480627	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:128,10:30:138:0.072:2	./.	0/1:91,12:31:104:0.117:2	./.	0/1:111,7:32:118:0.059:2	./.	0/1:100,18:30:118:0.153:2	./.
chr22	21480628	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,6:32:97:0.062:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,9:32:86:0.105:2
chr22	21480661	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,9:33:88:0.102:2	0/1:58,10:32:68:0.147:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	21480766	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,3:31:22:0.136:2
chr22	21480986	rs200899922	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.
chr22	21481150	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,3:33:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	21481188	rs202035824	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,8:31:14:0.571:2	0/1:4,8:31:12:0.667:2	./.	0/1:2,16:31:18:0.889:2	0/1:8,8:33:16:0.500:2	0/1:10,5:31:15:0.333:2	0/1:4,18:31:22:0.818:2	0/1:10,15:32:25:0.600:2	0/1:7,10:33:17:0.588:2	0/1:5,13:31:18:0.722:2	0/1:5,4:32:9:0.444:2
chr22	21481208	rs199943339	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:8,5:32:13:0.385:2	./.	0/1:9,14:31:23:0.609:2	0/1:11,8:32:19:0.421:2	./.	0/1:9,17:32:26:0.654:2	0/1:17,13:32:30:0.433:2	0/1:17,7:33:24:0.292:2	0/1:9,11:32:20:0.550:2	./.
chr22	21481271	rs200905797	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,4:30:28:0.148:2	./.	./.	0/1:30,11:30:41:0.268:2	0/1:20,4:28:24:0.167:2	./.
chr22	21481299	rs201612607	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,6:31:14:0.429:2	./.
chr22	21481385	rs375838317	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,3:32:16:0.188:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	21481398	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,3:33:32:0.094:2	./.	./.	./.	./.	./.	./.	./.
chr22	21481428	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,9:32:34:0.265:2	./.	./.
chr22	21481528	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,3:32:13:0.231:2	./.	./.
chr22	21481540	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,3:32:11:0.273:2	./.	./.	./.	./.
chr22	21481561	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:15,3:33:18:0.167:2	./.	./.	./.	./.	0/1:7,4:33:11:0.364:2	./.	0/1:10,3:34:13:0.231:2	./.	./.
chr22	21481720	rs202001540	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:28:11:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	21481955	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,6:31:150:0.040:2	./.	./.
chr22	21481974	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:164,5:33:170:0.030:2	./.	0/1:190,5:30:195:0.026:2	./.	./.	./.	./.	./.
chr22	21481975	.	A	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:121,5:28:126:0.040:2	./.	./.	0/1:163,8:31:171:0.047:2	./.	0/1:185,10:29:195:0.051:2	./.	0/1:165,10:28:175:0.057:2	0/1:192,5:28:197:0.025:2	0/1:37,6:29:43:0.140:2	0/1:182,10:29:192:0.052:2
chr22	21482029	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:182,6:31:188:0.032:2	./.	./.	./.	./.	./.	0/1:105,4:30:109:0.037:2	./.
chr22	21482055	rs201444113	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:114,45:32:159:0.283:2	./.	0/1:161,15:31:176:0.085:2	0/1:129,21:32:150:0.140:2	0/1:153,11:33:164:0.067:2	0/1:87,26:33:113:0.230:2	0/1:158,13:32:171:0.076:2
chr22	21482056	.	G	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:162,9:29:171:0.053:2	./.	0/1:13,14:30:28:0.519:2	0/1:157,14:29:171:0.082:2	./.	0/1:117,48:29:165:0.291:2	0/1:162,12:28:174:0.069:2	0/1:93,51:29:144:0.354:2	0/1:154,10:30:164:0.061:2	0/1:103,14:31:117:0.120:2	0/1:157,12:31:170:0.071:2
chr22	21482084	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:119,29:33:148:0.196:2	./.	./.	./.	./.	./.	./.	./.
chr22	21482088	.	T	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:112,5:30:117:0.043:2	./.	./.	./.	0/1:78,7:29:85:0.082:2	./.	./.	./.	0/1:129,10:31:139:0.072:2	0/1:75,13:28:89:0.148:2	./.
chr22	21562464	rs200098897	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:91,93:30:184:0.505:2	0/1:73,76:32:149:0.510:2	./.	./.	0/1:49,142:31:191:0.743:2	./.	0/1:23,153:30:176:0.869:2	./.	./.	0/1:94,86:30:180:0.478:2	0/1:110,69:31:179:0.385:2
chr22	21562488	rs200893453	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,82:31:193:0.425:2	./.
chr22	21562496	rs200240356	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,82:31:192:0.429:2	./.
chr22	21562549	rs200450103	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,44:32:101:0.440:2	./.
chr22	21562572	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,7:32:74:0.095:2	./.	./.
chr22	21563393	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:117,4:32:121:0.033:2	./.	./.	./.	./.	./.	./.
chr22	21563415	.	G	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,5:29:81:0.062:2	./.	./.	0/1:108,9:30:117:0.077:2	./.	0/1:99,6:31:105:0.057:2	./.
chr22	21567364	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,27:33:191:0.141:2	./.	./.
chr22	21567401	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,28:31:188:0.149:2	0/1:127,23:31:150:0.153:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	21567434	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:164,25:30:189:0.132:2	0/1:130,33:30:163:0.202:2	./.	./.	./.	0/1:180,15:29:195:0.077:2	./.	./.	./.	./.	./.
chr22	21567460	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,5:32:184:0.027:2	./.	./.
chr22	21568058	.	C	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:176,21:27:197:0.107:2	0/1:185,10:26:195:0.051:2	./.	0/1:155,7:28:162:0.043:2	0/1:142,14:27:156:0.090:2	./.	./.	./.
chr22	21570257	rs200714390	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,14:32:170:0.082:2
chr22	21570296	rs3895597	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,112:27:114:0.982:2	0/1:1,59:27:60:0.983:2	0/1:0,9:28:9:1.00:2	0/1:165,20:27:185:0.108:2	0/1:1,71:26:74:0.986:2	0/1:118,65:26:183:0.355:2	0/1:0,85:27:86:1.00:2	0/1:165,25:26:190:0.132:2	0/1:2,117:27:119:0.983:2	0/1:0,66:27:66:1.00:2	0/1:99,84:27:183:0.459:2
chr22	21570315	rs4051627	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,6:31:144:0.042:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	21570340	rs438804	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:124,35:30:160:0.220:2	0/1:77,17:31:94:0.181:2	./.	0/1:147,44:30:191:0.230:2	0/1:85,61:30:146:0.418:2	0/1:141,34:31:175:0.194:2	0/1:67,105:30:172:0.610:2	0/1:129,4:32:133:0.030:2	0/1:87,94:31:181:0.519:2	0/1:100,12:31:112:0.107:2	0/1:98,61:30:160:0.384:2
chr22	21570832	rs4051636	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:30:51:1.00:2	0/1:1,48:30:49:0.980:2	0/1:0,15:30:15:1.00:2	0/1:138,22:31:160:0.138:2	0/1:0,32:30:32:1.00:2	0/1:92,63:30:155:0.406:2	0/1:0,38:31:38:1.00:2	0/1:76,54:30:130:0.415:2	0/1:1,63:32:64:0.984:2	0/1:0,47:31:47:1.00:2	0/1:58,20:29:78:0.256:2
chr22	21570946	rs377421904	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	21576155	rs201167132	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,20:33:191:0.105:2	./.	./.
chr22	21576483	.	C	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:118,15:32:133:0.113:2	0/1:81,15:32:96:0.156:2	0/1:3,7:33:10:0.700:2	./.	0/1:160,23:31:183:0.126:2	./.	0/1:182,14:32:196:0.071:2	0/1:159,30:32:189:0.159:2	0/1:142,17:33:161:0.107:2	./.	./.
chr22	21576488	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,6:31:133:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	21579692	.	A	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:124,25:32:149:0.168:2	0/1:106,13:31:119:0.109:2	0/1:0,6:31:6:1.00:2	./.	0/1:50,65:31:116:0.565:2	0/1:148,27:31:175:0.154:2	0/1:88,55:31:143:0.385:2	0/1:67,25:32:92:0.272:2	0/1:43,59:32:102:0.578:2	./.	0/1:157,20:32:177:0.113:2
chr22	21579717	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:111,10:27:121:0.083:2	0/1:92,5:27:97:0.052:2	0/1:0,2:28:2:1.00:2	./.	0/1:5,25:25:30:0.833:2	0/1:104,8:26:112:0.071:2	0/1:5,11:25:16:0.688:2	0/1:5,23:26:28:0.821:2	0/1:0,14:26:14:1.00:2	./.	0/1:107,11:26:118:0.093:2
chr22	21579720	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:109,11:28:120:0.092:2	0/1:94,4:31:98:0.041:2	0/1:0,2:29:2:1.00:2	./.	0/1:17,16:27:33:0.485:2	./.	0/1:9,10:30:19:0.526:2	0/1:22,11:28:33:0.333:2	0/1:2,14:30:16:0.875:2	./.	./.
chr22	21579783	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:94,5:32:99:0.051:2	0/1:73,5:32:78:0.064:2	./.	0/1:180,9:33:189:0.048:2	./.	0/1:172,6:32:178:0.034:2	0/1:102,32:32:134:0.239:2	./.	./.	./.	./.
chr22	21738730	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,13:31:38:0.342:2	./.	./.	./.	./.	0/1:35,8:30:43:0.186:2	./.	./.	./.	./.	0/1:15,7:28:22:0.318:2
chr22	21738923	rs200924625	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:94,24:28:118:0.203:2	0/1:57,18:30:75:0.240:2	./.	./.	./.	0/1:140,34:30:174:0.195:2	./.	./.	./.	./.	0/1:96,21:29:117:0.179:2
chr22	21739323	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,37:30:189:0.196:2	./.	./.	./.	./.
chr22	21739341	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:131,34:29:165:0.206:2	0/1:64,118:29:183:0.648:2	0/1:135,48:30:183:0.262:2	0/1:131,51:30:182:0.280:2	0/1:83,87:29:171:0.512:2	0/1:60,72:30:132:0.545:2	0/1:52,66:30:118:0.559:2	0/1:87,33:30:120:0.275:2
chr22	21740619	rs201528102	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,17:32:105:0.162:2	./.	./.	./.	./.
chr22	21740907	rs202029847	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,10:32:36:0.278:2	./.	./.	./.	./.
chr22	21740962	rs191102122	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,2:34:2:1.00:2	./.	0/1:0,2:35:2:1.00:2	./.	./.	./.	0/1:0,3:28:3:1.00:2	./.	./.	./.	./.
chr22	21741118	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,39:32:194:0.201:2	./.	./.	./.	./.
chr22	21741308	rs182493570	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,4:30:4:1.00:2	0/1:0,4:32:4:1.00:2	./.	0/1:0,5:29:5:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,4:33:4:1.00:2	./.	0/1:0,7:31:7:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,2:34:2:1.00:2	0/1:0,4:28:4:1.00:2
chr22	21741331	rs199765166	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,4:30:4:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,9:28:9:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,4:29:4:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,2:35:2:1.00:2	0/1:0,3:30:3:1.00:2
chr22	21741420	rs148109581	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:24:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:26:5:0.800:2
chr22	21741586	rs375396477	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:30:2:1.00:2	0/1:0,29:32:29:1.00:2	./.	./.	0/1:0,3:33:3:1.00:2	./.	./.	./.	0/1:4,4:33:8:0.500:2
chr22	21741656	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,18:31:119:0.151:2	./.	./.	./.	./.	./.	./.	./.
chr22	21741888	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:45,11:30:56:0.196:2	0/1:55,10:29:65:0.154:2	0/1:11,5:29:16:0.313:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	21741964	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,35:27:68:0.515:2	./.	./.	./.	./.	./.	./.	./.
chr22	21742066	rs200259378	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:78,103:31:182:0.569:2	0/1:41,64:31:105:0.610:2	0/1:1,24:31:25:0.960:2	./.	0/1:55,136:31:191:0.712:2	0/1:59,134:31:193:0.694:2	0/1:105,52:32:157:0.331:2	0/1:10,170:31:180:0.944:2	0/1:7,150:33:158:0.955:2	0/1:7,122:31:129:0.946:2	0/1:49,140:32:189:0.741:2
chr22	21742245	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:89,72:30:161:0.447:2	0/1:76,63:31:139:0.453:2	0/1:2,13:29:15:0.867:2	./.	0/1:61,65:30:126:0.516:2	0/1:44,82:30:126:0.651:2	0/1:85,64:31:149:0.430:2	0/1:64,111:30:175:0.634:2	0/1:70,73:31:143:0.510:2	0/1:71,46:31:117:0.393:2	0/1:29,103:31:132:0.780:2
chr22	21742318	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,5:28:9:0.556:2	0/1:3,6:31:9:0.667:2	0/1:1,5:31:7:0.833:2	0/1:130,6:31:136:0.044:2	./.	0/1:0,8:27:8:1.00:2	0/1:0,2:33:2:1.00:2
chr22	21742389	rs202011105	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:115,15:32:130:0.115:2	0/1:76,6:33:82:0.073:2	0/1:16,7:30:23:0.304:2	./.	0/1:59,83:30:142:0.585:2	0/1:22,67:31:89:0.753:2	0/1:40,73:31:113:0.646:2	0/1:148,23:30:172:0.135:2	0/1:46,38:32:84:0.452:2	0/1:56,11:32:67:0.164:2	0/1:32,65:30:97:0.670:2
chr22	21742598	.	G	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:159,34:32:193:0.176:2	0/1:152,37:33:189:0.196:2	0/1:47,12:30:59:0.203:2	./.	0/1:125,69:32:194:0.356:2	0/1:157,42:31:199:0.211:2	0/1:109,90:32:199:0.452:2	0/1:108,90:32:198:0.455:2	0/1:118,77:32:195:0.395:2	0/1:144,52:32:196:0.265:2	0/1:150,44:31:194:0.227:2
chr22	21742684	rs200610234	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,142:30:183:0.776:2	0/1:51,129:31:182:0.717:2	0/1:29,25:29:54:0.463:2	0/1:82,103:30:185:0.557:2	0/1:96,98:30:194:0.505:2	0/1:138,46:30:184:0.250:2	0/1:72,109:30:181:0.602:2	0/1:45,144:30:189:0.762:2	0/1:92,87:30:179:0.486:2	0/1:140,53:31:194:0.275:2	0/1:133,56:31:190:0.296:2
chr22	21742755	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,38:31:189:0.202:2	./.	./.	./.
chr22	21742819	rs200038694	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:139,45:32:184:0.245:2	0/1:133,50:32:183:0.273:2	./.	0/1:98,88:31:186:0.473:2	./.	./.	./.	./.	./.	./.	./.
chr22	21743578	.	T	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:56,17:31:73:0.233:2	0/1:36,12:29:48:0.250:2	./.	0/1:33,43:29:76:0.566:2	0/1:110,27:29:137:0.197:2	0/1:89,11:30:100:0.110:2	0/1:88,25:29:113:0.221:2	0/1:65,24:28:90:0.270:2	0/1:71,19:29:91:0.211:2	0/1:43,18:29:61:0.295:2	0/1:84,12:26:96:0.125:2
chr22	21743580	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,23:29:73:0.315:2	./.	./.	./.	./.	./.	./.	./.
chr22	21743714	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,4:32:26:0.154:2	0/1:10,6:32:16:0.375:2	./.	0/1:16,7:32:23:0.304:2	0/1:18,8:31:26:0.308:2	0/1:25,4:28:29:0.138:2	0/1:14,11:31:25:0.440:2	0/1:16,11:32:27:0.407:2	0/1:19,19:32:38:0.500:2	0/1:10,8:31:18:0.444:2	0/1:39,4:33:43:0.093:2
chr22	21743736	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:8,13:32:21:0.619:2	./.	0/1:2,2:33:4:0.500:2	0/1:13,6:32:19:0.316:2	0/1:11,8:32:19:0.421:2	0/1:4,13:32:17:0.765:2	0/1:8,6:32:14:0.429:2	0/1:8,9:33:17:0.529:2	0/1:14,11:34:25:0.440:2	0/1:8,9:32:17:0.529:2	0/1:4,28:33:32:0.875:2
chr22	21743748	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,5:32:16:0.313:2	./.	./.	./.
chr22	21797094	rs486362	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,30:28:31:0.968:2	0/1:1,16:32:17:0.941:2	0/1:0,3:25:3:1.00:2	0/1:3,21:30:24:0.875:2	0/1:1,10:29:11:0.909:2	0/1:0,18:26:18:1.00:2	0/1:0,11:29:11:1.00:2	0/1:1,33:30:34:0.971:2	0/1:1,11:28:12:0.917:2	0/1:0,16:25:16:1.00:2	0/1:1,18:29:19:0.947:2
chr22	21797102	rs1210228	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:32:22:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,11:33:11:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,17:33:17:1.00:2
chr22	21800042	rs467181	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,11:28:11:1.00:2	0/1:0,13:32:13:1.00:2	./.	0/1:0,21:32:21:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,10:31:10:1.00:2
chr22	21800444	rs128477	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,13:29:13:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,17:30:18:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,18:28:18:1.00:2	0/1:0,31:30:31:1.00:2	0/1:0,14:30:14:1.00:2
chr22	21800698	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	21829507	rs140118179	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,138:31:172:0.802:2	0/1:23,73:31:96:0.760:2	0/1:8,17:32:25:0.680:2	0/1:29,65:31:94:0.691:2	0/1:47,64:30:111:0.577:2	0/1:26,134:30:160:0.838:2	0/1:65,90:31:155:0.581:2	0/1:72,104:31:176:0.591:2	0/1:35,135:31:170:0.794:2	0/1:29,135:30:164:0.823:2	0/1:44,107:31:151:0.709:2
chr22	21829555	rs377578228	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,7:31:195:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	21830934	.	G	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:80,70:32:152:0.467:2	0/1:104,81:31:185:0.438:2	0/1:27,48:29:75:0.640:2	./.	0/1:123,72:30:195:0.369:2	0/1:71,108:30:179:0.603:2	0/1:3,174:30:179:0.983:2	0/1:86,102:30:188:0.543:2	0/1:79,108:31:187:0.578:2	0/1:64,112:31:177:0.636:2	0/1:113,69:30:184:0.379:2
chr22	21832094	.	A	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:137,51:31:188:0.271:2	0/1:100,31:31:131:0.237:2	./.	./.	0/1:177,17:33:194:0.088:2	0/1:169,19:29:188:0.101:2	./.	0/1:184,10:32:194:0.052:2	0/1:181,15:33:196:0.077:2	0/1:160,27:29:187:0.144:2	0/1:135,60:31:195:0.308:2
chr22	21832202	.	G	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:90,92:30:182:0.505:2	0/1:73,49:31:122:0.402:2	0/1:35,15:30:50:0.300:2	./.	0/1:110,57:30:167:0.341:2	0/1:116,65:30:181:0.359:2	./.	0/1:134,50:31:184:0.272:2	0/1:103,61:30:165:0.372:2	0/1:99,48:30:147:0.327:2	0/1:71,89:30:160:0.556:2
chr22	21832428	rs371352178	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:28:25:1.00:2	0/1:0,18:28:18:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,22:28:22:1.00:2	0/1:1,68:29:69:0.986:2	0/1:0,45:29:45:1.00:2	0/1:1,50:27:51:0.980:2	0/1:0,48:28:48:1.00:2	0/1:0,37:29:37:1.00:2	0/1:1,27:30:28:0.964:2	0/1:1,29:28:30:0.967:2
chr22	21838301	rs199663506	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,20:31:20:1.00:2	0/1:0,12:31:12:1.00:2	./.	./.	0/1:4,6:30:10:0.600:2	0/1:0,23:30:23:1.00:2	0/1:1,14:32:15:0.933:2	0/1:1,13:31:14:0.929:2	0/1:0,23:31:24:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,18:32:18:1.00:2
chr22	21838312	rs200648981	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,5:34:24:0.208:2
chr22	21838339	rs201760046	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:30:34:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,3:30:3:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,29:31:29:1.00:2	0/1:1,36:32:37:0.973:2	0/1:1,36:31:37:0.973:2	0/1:0,40:30:40:1.00:2
chr22	21838377	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:32:175:0.023:2	./.	./.	./.	./.	./.
chr22	21900594	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:27,14:31:41:0.341:2	0/1:24,6:32:30:0.200:2	./.	0/1:22,18:30:40:0.450:2	./.	./.	./.	./.	./.	./.	./.
chr22	21900658	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,42:30:177:0.237:2	./.	./.	./.
chr22	21900729	rs201052475	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,130:31:176:0.739:2	0/1:47,127:31:174:0.730:2	0/1:14,26:31:40:0.650:2	0/1:71,112:31:183:0.612:2	0/1:93,91:31:184:0.495:2	0/1:133,47:31:180:0.261:2	0/1:91,91:32:182:0.500:2	0/1:38,134:32:173:0.779:2	0/1:77,106:32:183:0.579:2	0/1:129,53:31:183:0.291:2	0/1:125,44:32:169:0.260:2
chr22	21900815	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:157,39:32:196:0.199:2	0/1:155,36:33:191:0.188:2	0/1:40,11:32:51:0.216:2	./.	0/1:121,64:32:185:0.346:2	0/1:142,57:32:199:0.286:2	0/1:102,87:32:189:0.460:2	0/1:106,88:32:195:0.454:2	0/1:99,94:34:193:0.487:2	0/1:142,53:33:195:0.272:2	0/1:143,48:33:191:0.251:2
chr22	21901024	.	C	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:141,35:32:176:0.199:2	0/1:83,8:32:91:0.088:2	0/1:8,9:32:17:0.529:2	./.	0/1:53,68:32:121:0.562:2	0/1:21,87:31:108:0.806:2	0/1:33,87:32:120:0.725:2	0/1:143,27:31:170:0.159:2	0/1:62,41:32:103:0.398:2	0/1:61,19:31:80:0.238:2	0/1:32,77:31:109:0.706:2
chr22	21901095	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:32:7:0.667:2
chr22	21901168	.	G	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:96,90:30:186:0.484:2	0/1:74,83:31:157:0.529:2	0/1:5,36:31:41:0.878:2	./.	0/1:75,124:30:199:0.623:2	0/1:49,148:30:197:0.751:2	0/1:91,106:31:198:0.538:2	0/1:67,124:31:192:0.649:2	0/1:90,95:31:185:0.514:2	0/1:70,75:31:145:0.517:2	0/1:47,149:31:198:0.760:2
chr22	21901347	rs199678571	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:56,115:32:171:0.673:2	0/1:33,63:31:96:0.656:2	0/1:1,29:31:30:0.967:2	./.	0/1:52,95:31:147:0.646:2	0/1:39,125:31:164:0.762:2	0/1:56,57:32:113:0.504:2	0/1:12,130:31:142:0.915:2	0/1:10,100:32:110:0.909:2	0/1:10,133:32:143:0.930:2	0/1:46,118:31:164:0.720:2
chr22	21901449	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,62:28:114:0.544:2	./.	./.	./.	./.	./.	./.	./.
chr22	21901525	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:81,30:30:111:0.270:2	0/1:41,15:28:56:0.268:2	0/1:10,4:30:14:0.286:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	21901757	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,25:28:108:0.231:2	./.	./.	./.	./.	./.	./.	./.
chr22	21902295	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,49:33:186:0.265:2	./.	./.	./.	./.
chr22	21902451	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	21902506	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,3:32:34:0.088:2	./.	./.	./.	./.
chr22	21902794	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,30:32:103:0.291:2	./.	./.	./.	./.
chr22	21904072	.	G	A	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,6:31:20:0.300:2	0/1:134,38:29:172:0.221:2	0/1:56,88:29:144:0.611:2	0/1:120,38:28:159:0.241:2	0/1:91,33:29:124:0.266:2	0/1:69,77:29:146:0.527:2	0/1:45,73:31:118:0.619:2	0/1:44,58:30:102:0.569:2	0/1:83,34:29:118:0.291:2
chr22	21904090	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,23:30:132:0.174:2	./.	./.	./.	./.
chr22	21904490	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:123,38:29:162:0.236:2	0/1:79,37:31:116:0.319:2	./.	./.	./.	0/1:137,51:30:188:0.271:2	./.	./.	./.	./.	0/1:114,41:29:155:0.265:2
chr22	21904683	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,9:31:31:0.290:2	0/1:13,7:26:20:0.350:2	./.	./.	./.	0/1:45,12:27:57:0.211:2	./.	./.	./.	./.	0/1:13,5:29:18:0.278:2
chr22	21905576	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,37:31:183:0.202:2	./.
chr22	21947189	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:98,4:31:102:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr22	21975938	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:31:51:0.078:2	./.	0/1:45,12:31:57:0.211:2	./.	./.	./.
chr22	21982892	rs2298428	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,10:26:13:0.769:2	./.	./.	./.	./.	0/1:0,5:26:5:1.00:2
chr22	21983693	rs200854366	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,14:32:26:0.538:2	./.	./.	./.	./.	./.	./.	./.
chr22	21983853	rs861856	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,16:31:40:0.400:2	0/1:16,26:28:42:0.619:2	./.	0/1:30,24:30:54:0.444:2	0/1:25,28:28:53:0.528:2	./.	0/1:19,11:27:30:0.367:2	./.
chr22	21984205	rs710177	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:2,4:31:6:0.667:2	./.	0/1:0,18:30:18:1.00:2	0/1:14,7:28:21:0.333:2	0/1:13,5:25:18:0.278:2	0/1:10,5:29:15:0.333:2	0/1:13,7:28:20:0.350:2	./.	0/1:9,5:33:14:0.357:2	0/1:1,3:28:4:0.750:2
chr22	21988373	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:32:138:0.029:2	./.	./.	./.	./.	./.
chr22	21988524	rs861854	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,36:31:79:0.456:2	0/1:53,66:30:119:0.555:2	./.	0/1:49,43:30:92:0.467:2	./.	./.	0/1:22,24:31:46:0.522:2	./.
chr22	21988599	rs371513	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,21:30:30:0.700:2	./.	./.	0/1:7,8:32:15:0.533:2
chr22	21988602	rs861853	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,12:30:21:0.571:2	0/1:9,20:30:29:0.690:2	./.	0/1:7,8:31:15:0.533:2	./.	./.	0/1:7,10:31:17:0.588:2	./.
chr22	21988833	rs12170285	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,34:32:61:0.557:2	./.
chr22	21989325	rs730882	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,21:32:46:0.477:2	./.
chr22	21990752	rs148692511	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,29:32:52:0.558:2	./.	./.	./.	./.	./.	./.	./.
chr22	21991072	rs861852	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,18:29:18:1.00:2	0/1:11,7:26:18:0.389:2	./.	0/1:14,6:30:20:0.300:2	./.	./.	0/1:1,14:30:15:0.933:2	./.
chr22	21996722	rs28436610	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,52:27:74:0.703:2	./.	./.	./.	./.	./.	./.	./.
chr22	21998280	rs73166641	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,94:31:179:0.525:2	./.	./.	./.
chr22	22039199	rs861833	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,13:32:40:0.325:2	./.	./.	./.	./.	./.	0/1:19,14:30:33:0.424:2	./.
chr22	22049783	rs12484060	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:29:6:0.500:2	./.	0/1:41,51:29:92:0.554:2	0/1:1,89:30:91:0.989:2	0/1:54,52:29:106:0.491:2	./.	0/1:67,56:30:123:0.455:2	./.	./.
chr22	22058098	rs76845365	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,18:31:32:0.563:2	./.
chr22	22058355	rs2236643	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:37,49:33:86:0.570:2	0/1:21,20:32:41:0.488:2	./.	./.	0/1:2,97:32:99:0.980:2	0/1:31,49:33:80:0.613:2	0/1:49,60:33:109:0.550:2	./.	0/1:56,57:33:113:0.504:2	./.	./.
chr22	22221680	rs200497005	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chr22	22287862	rs2027789	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:24,17:29:43:0.415:2	0/1:11,8:32:19:0.421:2	./.	0/1:0,47:30:47:1.00:2	./.	0/1:0,56:30:56:1.00:2	./.	0/1:2,66:30:68:0.971:2	./.	0/1:10,16:31:26:0.615:2	0/1:10,21:30:31:0.677:2
chr22	22288560	rs9610645	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,13:31:32:0.406:2	./.	0/1:31,19:33:50:0.380:2	./.	./.	./.
chr22	22311628	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,4:32:68:0.059:2	./.	./.	./.	./.	./.	./.	./.
chr22	22311648	rs372011048	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,4:31:81:0.049:2	0/1:79,4:30:83:0.048:2	./.	./.	./.	./.	./.
chr22	22311776	rs140264686	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:36,3:32:39:0.077:2	0/1:151,20:33:171:0.117:2	0/1:167,17:32:184:0.092:2	./.	0/1:152,11:33:164:0.067:2	0/1:122,34:32:156:0.218:2	0/1:152,16:33:168:0.095:2	0/1:130,16:33:146:0.110:2	0/1:128,7:31:135:0.052:2
chr22	22311882	rs145256528	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,33:29:69:0.478:2	0/1:35,9:30:44:0.205:2	0/1:52,22:29:75:0.297:2	./.	0/1:10,40:30:51:0.800:2	0/1:27,6:32:33:0.182:2	0/1:22,16:29:38:0.421:2	0/1:6,20:30:27:0.769:2
chr22	22312790	rs4638895	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,42:27:93:0.452:2	./.	0/1:60,65:27:125:0.520:2	./.	./.	./.
chr22	22312948	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:34:130:0.031:2	./.	./.
chr22	22317337	rs239914	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,12:29:24:0.500:2	./.	0/1:13,16:31:29:0.552:2	./.	0/1:19,15:31:34:0.441:2	./.	0/1:13,5:32:18:0.278:2	0/1:13,11:30:24:0.458:2
chr22	22318538	rs9610728	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,70:30:144:0.496:2	./.	0/1:74,96:30:170:0.565:2	./.	./.	./.
chr22	22318671	rs9610729	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,56:31:102:0.549:2	./.	0/1:42,64:31:106:0.604:2	./.	./.	./.
chr22	22319731	rs144126907	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,31:33:58:0.534:2	./.	./.	./.	./.	./.	./.	./.
chr22	22326241	rs112837531	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,42:29:80:0.525:2	./.	./.	./.	./.	./.	./.	./.
chr22	22330082	rs239927	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:15,12:34:27:0.444:2	0/1:9,12:33:21:0.571:2	./.	0/1:0,34:32:34:1.00:2	./.	0/1:2,38:33:40:0.950:2	0/1:26,20:32:46:0.435:2	0/1:0,46:32:46:1.00:2	./.	0/1:13,18:33:31:0.581:2	0/1:0,24:32:24:1.00:2
chr22	22385451	rs145639128	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,13:32:37:0.351:2	./.	./.	./.	./.	./.	./.	./.
chr22	22385565	rs142298476	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,20:32:39:0.513:2	./.	./.	./.	./.	./.	./.	./.
chr22	22385736	rs56371242	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,5:31:88:0.057:2
chr22	22385747	rs140354453	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,65:32:113:0.575:2	./.	./.	./.	./.	./.	./.	./.
chr22	22453513	rs9611014	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,32:31:76:0.421:2	./.	./.	./.	./.	0/1:44,33:32:77:0.429:2	./.	./.
chr22	22516866	rs377758528	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,69:32:194:0.356:2	./.	./.	./.
chr22	22516871	rs188129839	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,73:30:195:0.374:2	./.	./.	./.
chr22	22516946	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:120,4:33:124:0.032:2	./.	./.	./.	./.	./.	./.	./.
chr22	22516998	rs2073453	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,73:32:74:0.986:2	0/1:3,27:32:30:0.900:2	0/1:0,9:31:9:1.00:2	./.	0/1:45,31:32:76:0.408:2	0/1:49,33:32:82:0.402:2	0/1:37,36:32:73:0.493:2	0/1:38,47:32:85:0.553:2	0/1:35,40:33:75:0.533:2	0/1:43,28:32:71:0.394:2	./.
chr22	22517026	rs738885	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:33:54:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,37:33:37:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,51:32:51:1.00:2	0/1:20,22:33:42:0.524:2	0/1:0,58:32:58:1.00:2	0/1:0,53:34:53:1.00:2	0/1:0,51:33:51:1.00:2	./.
chr22	22550401	rs11705157	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,74:30:169:0.438:2	0/1:65,73:30:138:0.529:2	./.
chr22	22550450	rs2073447	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,71:30:73:0.973:2	0/1:1,46:30:47:0.979:2	0/1:0,9:32:9:1.00:2	0/1:51,40:31:91:0.440:2	0/1:55,28:30:83:0.337:2	0/1:52,32:31:84:0.381:2	0/1:48,49:31:97:0.505:2	0/1:62,49:30:111:0.441:2	0/1:41,47:31:88:0.534:2	./.	./.
chr22	22550510	rs2073448	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:30:46:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,50:31:50:1.00:2	0/1:30,19:31:49:0.388:2	0/1:0,40:32:40:1.00:2	0/1:25,19:31:44:0.432:2	0/1:3,54:32:57:0.947:2	0/1:0,43:32:43:1.00:2	0/1:0,36:31:36:1.00:2	./.
chr22	22556270	rs5995639	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,9:31:23:0.391:2	0/1:7,7:32:14:0.500:2	0/1:0,3:32:3:1.00:2	0/1:10,20:33:30:0.667:2	0/1:0,18:33:18:1.00:2	0/1:0,22:31:22:1.00:2	0/1:1,23:32:24:0.958:2	0/1:24,15:33:39:0.385:2	0/1:10,12:34:22:0.545:2	0/1:7,7:33:14:0.500:2	0/1:6,12:32:18:0.667:2
chr22	22556368	rs9306341	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,12:31:30:0.400:2	0/1:9,6:32:15:0.400:2	0/1:0,2:32:2:1.00:2	0/1:13,20:31:33:0.606:2	0/1:0,21:30:21:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,29:32:29:1.00:2	0/1:22,11:31:33:0.333:2	0/1:14,23:33:37:0.622:2	0/1:28,14:32:42:0.333:2	0/1:18,5:32:23:0.217:2
chr22	22569448	rs5750741	T	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,10:31:14:0.714:2	0/1:1,53:31:54:0.981:2	0/1:0,67:30:67:1.00:2	0/1:25,34:31:59:0.576:2	0/1:42,23:31:65:0.354:2	0/1:0,73:31:73:1.00:2	0/1:32,32:32:64:0.500:2	0/1:14,26:30:40:0.650:2	0/1:30,25:31:55:0.455:2
chr22	22569554	rs6001413	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,4:28:7:0.571:2	0/1:0,45:30:45:1.00:2	0/1:23,27:30:50:0.540:2	./.	0/1:28,19:30:47:0.404:2	0/1:0,69:30:69:1.00:2	0/1:32,36:32:68:0.529:2	0/1:34,19:30:53:0.358:2	0/1:22,33:32:55:0.600:2
chr22	22569640	rs6001415	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:31:3:0.667:2	0/1:0,27:33:27:1.00:2	0/1:0,41:32:41:1.00:2	0/1:22,27:32:49:0.551:2	0/1:39,23:32:62:0.371:2	0/1:0,73:32:73:1.00:2	0/1:34,22:33:56:0.393:2	0/1:23,19:32:42:0.452:2	0/1:27,18:33:45:0.400:2
chr22	22599537	rs1320	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,12:30:28:0.429:2	./.	./.	./.	./.	./.	./.	./.
chr22	22599674	rs5995719	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:33:8:0.750:2	./.	0/1:5,4:30:9:0.444:2	0/1:5,3:30:8:0.375:2	./.	0/1:9,5:32:14:0.357:2	0/1:4,6:32:10:0.600:2	./.
chr22	22599705	rs5995720	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:30:4:0.750:2	./.	./.	./.	./.	./.	0/1:2,4:29:6:0.667:2	./.
chr22	22676932	rs4820398	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,13:32:123:0.106:2	./.	0/1:113,7:32:120:0.058:2	./.	./.
chr22	22677134	rs143037715	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,5:34:30:0.167:2	./.	./.
chr22	22677176	rs11704294	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,9:31:27:0.333:2	./.	0/1:11,21:32:32:0.656:2	./.	0/1:21,7:33:28:0.250:2	./.	0/1:13,18:33:31:0.581:2	./.
chr22	22677182	rs11703618	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,9:30:23:0.391:2	./.	0/1:10,21:31:31:0.677:2	./.	0/1:19,6:31:25:0.240:2	./.	0/1:13,19:32:32:0.594:2	./.
chr22	22677218	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,14:31:28:0.500:2	./.	./.
chr22	22677261	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,12:33:32:0.375:2	./.	./.
chr22	22681721	rs12484322	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,68:32:132:0.515:2	0/1:59,47:32:106:0.443:2	./.	0/1:55,62:32:117:0.530:2	0/1:80,76:32:156:0.487:2	./.	./.	./.
chr22	22681765	rs3819309	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,81:30:139:0.583:2	0/1:50,44:30:94:0.468:2	./.	0/1:46,41:30:87:0.471:2	0/1:62,61:30:123:0.496:2	./.	./.	./.
chr22	22698027	rs1894246	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,17:33:17:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,7:33:7:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,25:34:25:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,29:31:29:1.00:2
chr22	22707275	rs5995854	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,32:32:92:0.348:2	0/1:29,16:31:45:0.356:2	0/1:10,3:32:13:0.231:2	0/1:76,30:32:106:0.283:2	0/1:34,22:31:56:0.393:2	0/1:70,43:31:113:0.381:2	0/1:62,40:31:102:0.392:2	0/1:1,134:31:135:0.993:2	0/1:45,7:33:52:0.135:2	0/1:35,42:32:77:0.545:2	0/1:85,41:31:126:0.325:2
chr22	22707299	rs34503659	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:61,24:32:85:0.282:2	0/1:32,15:30:47:0.319:2	./.	0/1:98,24:32:122:0.197:2	0/1:36,24:31:60:0.400:2	0/1:69,43:32:112:0.384:2	0/1:66,32:31:98:0.327:2	0/1:1,124:32:125:0.992:2	0/1:49,4:34:53:0.075:2	0/1:39,44:31:83:0.530:2	0/1:86,35:32:121:0.289:2
chr22	22707309	rs35779014	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,24:31:60:0.400:2	0/1:61,41:30:102:0.402:2	./.	0/1:32,90:31:122:0.738:2	./.	0/1:48,31:32:79:0.392:2	./.
chr22	22707316	rs200716375	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,6:33:86:0.070:2	0/1:106,12:30:118:0.102:2	./.	./.	./.
chr22	22707473	rs74549497	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:13,11:30:24:0.458:2	0/1:15,14:32:29:0.483:2	./.	0/1:10,39:29:49:0.796:2	./.	0/1:17,21:32:38:0.553:2	./.
chr22	22707493	rs72490665	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:31,5:31:36:0.139:2	./.	./.	0/1:34,5:23:39:0.128:2	./.	./.	0/1:40,12:32:52:0.231:2	0/1:56,10:31:67:0.152:2	./.	./.	0/1:41,4:32:45:0.089:2
chr22	22707527	rs61739192	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:30,4:31:34:0.118:2	./.	./.	./.	./.	./.	0/1:49,9:31:58:0.155:2	0/1:56,7:30:63:0.111:2	./.	./.	./.
chr22	22707555	rs79612806	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,5:32:34:0.147:2	0/1:22,9:30:31:0.290:2	./.	0/1:4,31:31:35:0.886:2	./.	0/1:18,9:31:27:0.333:2	./.
chr22	22707557	rs201334749	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,5:32:35:0.143:2	0/1:21,9:32:30:0.300:2	0/1:37,3:32:40:0.075:2	0/1:0,32:31:32:1.00:2	./.	0/1:18,9:30:27:0.333:2	./.
chr22	22707576	rs117042445	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,3:32:26:0.115:2	0/1:23,5:31:28:0.179:2	./.	0/1:0,14:30:14:1.00:2	./.	0/1:20,7:30:27:0.259:2	./.
chr22	22707696	rs73880635	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,3:32:17:0.176:2	0/1:43,9:32:52:0.173:2	./.	0/1:1,15:31:16:0.938:2	./.	0/1:24,7:32:31:0.226:2	./.
chr22	22707713	rs73880637	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,4:32:21:0.190:2	0/1:44,12:31:56:0.214:2	./.	0/1:1,20:32:21:0.952:2	./.	0/1:25,9:30:34:0.265:2	./.
chr22	22707728	rs148013584	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,5:32:25:0.200:2	0/1:46,13:31:59:0.220:2	./.	0/1:2,30:32:32:0.938:2	./.	0/1:30,10:31:40:0.250:2	./.
chr22	22707782	rs76446997	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:20,4:31:24:0.167:2	0/1:29,10:32:39:0.256:2	./.	0/1:2,31:32:33:0.939:2	./.	0/1:22,6:29:28:0.214:2	./.
chr22	22712467	rs5757973	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,82:33:83:0.988:2	0/1:1,45:32:46:0.978:2	0/1:0,7:33:7:1.00:2	0/1:6,80:32:86:0.930:2	0/1:6,45:31:51:0.882:2	0/1:7,60:32:67:0.896:2	0/1:1,54:32:55:0.982:2	0/1:65,35:32:100:0.350:2	0/1:4,85:33:89:0.955:2	0/1:6,73:33:79:0.924:2	0/1:10,104:32:114:0.912:2
chr22	22712530	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,5:31:74:0.068:2	./.	./.
chr22	22712548	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,4:32:93:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr22	22712553	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.	./.	./.	./.	./.	./.	./.
chr22	22724341	rs9607803	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,17:31:45:0.378:2	0/1:19,9:29:28:0.321:2	./.	0/1:1,34:32:35:0.971:2	0/1:12,11:31:23:0.478:2	0/1:28,27:32:55:0.491:2	./.	./.	0/1:29,4:33:33:0.121:2	0/1:18,14:33:32:0.438:2	0/1:33,25:33:58:0.431:2
chr22	22724394	rs7292000	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,41:31:42:0.976:2	0/1:0,27:30:27:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,37:31:37:1.00:2	0/1:36,35:30:71:0.493:2	0/1:0,43:32:43:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,61:30:61:1.00:2
chr22	22730359	rs5758037	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,28:31:48:0.583:2	0/1:9,18:31:27:0.667:2	0/1:2,4:31:6:0.667:2	0/1:1,41:31:42:0.976:2	0/1:13,16:30:29:0.552:2	0/1:32,25:31:57:0.439:2	./.	./.	0/1:23,5:32:28:0.179:2	./.	0/1:33,32:32:65:0.492:2
chr22	22730584	rs1985918	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,35:31:51:0.686:2	./.
chr22	22730595	.	T	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:33:93:0.043:2	./.	0/1:51,3:34:54:0.056:2	0/1:71,4:32:75:0.053:2
chr22	22730619	rs61731379	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:51,4:28:55:0.073:2	./.	./.	./.	./.	./.	0/1:69,5:32:74:0.068:2	0/1:84,12:32:96:0.125:2	./.	0/1:50,6:32:56:0.107:2	0/1:65,7:30:72:0.097:2
chr22	22730620	rs79280084	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:51,4:32:55:0.073:2	./.	./.	./.	./.	./.	0/1:68,5:32:73:0.068:2	0/1:88,8:30:96:0.083:2	./.	0/1:50,6:31:56:0.107:2	0/1:67,7:30:74:0.095:2
chr22	22730634	rs2009587	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,19:31:52:0.365:2	0/1:16,14:31:30:0.467:2	./.	0/1:6,37:30:43:0.860:2	0/1:4,57:30:61:0.934:2	0/1:2,40:30:42:0.952:2	./.	0/1:51,30:30:81:0.370:2	0/1:29,9:31:38:0.237:2	0/1:37,20:30:57:0.351:2	0/1:38,32:31:70:0.457:2
chr22	22730635	rs61731372	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,31:32:81:0.383:2	./.	./.	./.
chr22	22730648	rs202076025	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:32:77:0.052:2	./.	./.	./.
chr22	22730657	rs199880348	C	T,G	.	PASS	AC=1,1;AF=0.167,0.167;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:BQ:DP:FA:SS	./.	./.	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/2:33:74:0.054:2	./.	0/1:31:53:0.113:2	./.
chr22	22730696	rs79492832	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:41,6:32:47:0.128:2	0/1:16,10:32:26:0.385:2	./.	0/1:28,10:32:38:0.263:2	./.	./.	0/1:29,4:32:33:0.121:2	0/1:47,6:32:53:0.113:2	0/1:28,6:32:34:0.176:2	0/1:45,8:30:53:0.151:2	0/1:48,17:32:66:0.262:2
chr22	22730702	rs61731373	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:40,5:30:45:0.111:2	0/1:15,10:30:25:0.400:2	./.	0/1:29,10:31:39:0.256:2	./.	./.	0/1:26,4:29:31:0.133:2	0/1:38,8:26:46:0.174:2	0/1:26,6:32:32:0.188:2	0/1:44,8:31:52:0.154:2	0/1:49,18:29:67:0.269:2
chr22	22730739	rs72490667	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,3:32:40:0.075:2	./.	./.	./.
chr22	22730788	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,4:31:51:0.078:2	0/1:48,6:31:54:0.111:2	./.	0/1:47,9:28:56:0.161:2	./.	0/1:50,8:31:58:0.138:2	./.
chr22	22730806	rs199960583	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:59,5:30:64:0.078:2	0/1:52,8:32:60:0.133:2	./.	0/1:64,15:32:80:0.190:2	./.	0/1:58,8:31:66:0.121:2	./.
chr22	22730821	rs200883613	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,6:31:62:0.097:2	./.	0/1:80,20:31:100:0.200:2	./.	0/1:64,9:32:73:0.123:2	./.
chr22	22730868	rs201561764	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,5:31:59:0.085:2	0/1:50,7:30:57:0.123:2	./.	0/1:80,16:31:96:0.167:2	./.	0/1:49,4:31:53:0.075:2	./.
chr22	22735316	.	A	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:71,6:32:77:0.078:2	0/1:39,12:32:51:0.235:2	./.	0/1:70,9:33:79:0.114:2	./.	0/1:83,4:31:87:0.046:2	0/1:58,10:31:68:0.147:2	./.	./.	0/1:69,9:33:78:0.115:2	0/1:89,9:31:98:0.092:2
chr22	22735573	rs111733579	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:83,6:26:89:0.067:2	./.	./.	0/1:88,4:32:93:0.043:2	./.	./.	0/1:61,5:32:66:0.076:2	./.	./.	./.	./.
chr22	22735636	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,33:33:82:0.402:2	./.	./.
chr22	22735689	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,13:32:61:0.213:2	./.	./.
chr22	22735694	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,11:27:57:0.193:2	./.	./.
chr22	22764121	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,5:35:86:0.058:2	0/1:142,5:33:147:0.034:2	./.	./.	./.
chr22	22764548	rs143634461	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,3:31:32:0.094:2	./.	./.	./.	./.	./.	0/1:52,4:31:56:0.071:2
chr22	22782150	rs56060925	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,19:31:45:0.422:2	./.	./.	./.	./.	./.
chr22	22786737	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:33:101:0.040:2	./.	./.	./.	./.
chr22	22786748	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:33:100:0.040:2	./.	./.	./.	./.
chr22	22786792	rs57337788	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,29:31:82:0.354:2	./.	./.	./.	./.
chr22	22842162	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,47:31:79:0.595:2
chr22	22842206	rs11109	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,18:29:44:0.409:2	0/1:22,14:30:36:0.389:2	0/1:0,7:32:7:1.00:2	0/1:35,22:30:58:0.386:2	0/1:0,38:31:38:1.00:2	0/1:0,74:30:74:1.00:2	0/1:0,48:28:48:1.00:2	0/1:3,59:30:62:0.952:2	0/1:0,31:31:31:1.00:2	0/1:1,41:30:42:0.976:2	0/1:0,86:31:87:1.00:2
chr22	22842494	.	A	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:152,11:32:163:0.067:2	./.	0/1:149,12:32:161:0.075:2	0/1:179,13:33:192:0.068:2	./.	0/1:142,9:33:151:0.060:2	0/1:181,7:32:188:0.037:2
chr22	22842518	rs73156173	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:129,5:34:134:0.037:2	./.	./.	./.	0/1:138,20:32:158:0.127:2	0/1:177,6:32:183:0.033:2	0/1:141,20:33:161:0.124:2	0/1:154,26:33:180:0.144:2	./.	0/1:131,16:32:147:0.109:2	0/1:174,17:32:191:0.089:2
chr22	22842607	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,4:33:68:0.059:2	./.	./.	./.	./.	./.	./.
chr22	22842751	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,5:27:110:0.045:2	./.	./.	./.	./.
chr22	22842769	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:32:94:0.043:2	./.	./.	./.	./.
chr22	22842957	rs2236729	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,34:32:86:0.395:2	0/1:33,24:32:57:0.421:2	0/1:0,11:33:11:1.00:2	0/1:24,37:33:61:0.607:2	0/1:0,57:32:57:1.00:2	0/1:1,54:32:55:0.982:2	0/1:0,44:33:44:1.00:2	0/1:0,89:33:89:1.00:2	0/1:3,38:33:41:0.927:2	0/1:1,71:33:72:0.986:2	0/1:2,105:32:107:0.981:2
chr22	22843118	rs2236730	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,47:32:86:0.547:2	0/1:27,24:32:51:0.471:2	0/1:0,6:32:6:1.00:2	0/1:41,31:31:72:0.431:2	0/1:0,58:31:58:1.00:2	0/1:0,101:31:101:1.00:2	0/1:0,41:32:41:1.00:2	0/1:1,93:32:95:0.989:2	0/1:1,30:33:31:0.968:2	0/1:0,75:32:75:1.00:2	0/1:0,126:32:126:1.00:2
chr22	22868493	rs361666	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:46,32:32:78:0.410:2	0/1:26,13:32:39:0.333:2	0/1:2,3:31:5:0.600:2	./.	0/1:3,29:31:32:0.906:2	0/1:38,20:32:58:0.345:2	0/1:29,18:32:47:0.383:2	0/1:2,68:31:70:0.971:2	./.	0/1:0,35:32:35:1.00:2	0/1:0,81:32:81:1.00:2
chr22	22868497	rs361762	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:46,35:33:81:0.432:2	0/1:26,14:33:40:0.350:2	0/1:2,4:33:6:0.667:2	./.	0/1:3,28:32:31:0.903:2	0/1:35,20:31:55:0.364:2	0/1:28,20:32:48:0.417:2	0/1:2,66:32:68:0.971:2	./.	0/1:0,36:32:36:1.00:2	0/1:0,80:33:80:1.00:2
chr22	22868773	rs361737	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:85,63:33:148:0.426:2	0/1:56,34:31:91:0.378:2	0/1:11,9:31:20:0.450:2	./.	0/1:3,146:31:149:0.980:2	0/1:100,75:31:175:0.429:2	0/1:85,89:31:174:0.511:2	0/1:1,161:32:162:0.994:2	./.	0/1:0,156:32:156:1.00:2	0/1:2,146:32:148:0.986:2
chr22	22868776	rs362173	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:82,62:33:144:0.431:2	0/1:55,34:32:89:0.382:2	0/1:11,9:32:20:0.450:2	./.	0/1:4,145:31:149:0.973:2	0/1:99,76:32:175:0.434:2	0/1:84,89:32:173:0.514:2	0/1:1,161:32:162:0.994:2	./.	0/1:1,154:32:155:0.994:2	0/1:2,145:32:147:0.986:2
chr22	22869123	rs362003	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:64,56:30:120:0.467:2	0/1:39,27:29:66:0.409:2	0/1:11,11:30:22:0.500:2	./.	0/1:1,89:30:90:0.989:2	0/1:65,68:30:133:0.511:2	0/1:41,43:29:84:0.512:2	0/1:0,118:30:118:1.00:2	./.	0/1:0,85:30:85:1.00:2	0/1:0,134:29:134:1.00:2
chr22	22869209	rs362124	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:43,38:32:81:0.469:2	0/1:32,23:31:55:0.418:2	0/1:7,5:33:12:0.417:2	./.	0/1:0,75:32:75:1.00:2	0/1:51,36:32:87:0.414:2	0/1:37,29:33:66:0.439:2	0/1:0,102:32:102:1.00:2	./.	0/1:1,73:33:74:0.986:2	0/1:0,98:32:98:1.00:2
chr22	22869218	rs362132	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:42,33:33:75:0.440:2	0/1:28,22:32:50:0.440:2	0/1:6,4:33:10:0.400:2	./.	0/1:0,74:32:74:1.00:2	0/1:58,44:32:102:0.431:2	0/1:39,32:33:71:0.451:2	0/1:0,104:32:104:1.00:2	./.	0/1:1,73:33:74:0.986:2	0/1:1,99:32:100:0.990:2
chr22	22869538	rs361611	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:27,9:31:36:0.250:2	0/1:16,8:31:24:0.333:2	./.	./.	0/1:2,21:30:23:0.913:2	0/1:15,6:31:21:0.286:2	0/1:12,5:30:17:0.294:2	0/1:0,35:31:35:1.00:2	./.	0/1:1,11:30:12:0.917:2	0/1:0,27:31:27:1.00:2
chr22	22869545	rs361580	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:25,5:31:30:0.167:2	0/1:16,8:31:24:0.333:2	./.	./.	0/1:2,23:30:25:0.920:2	0/1:15,7:33:22:0.318:2	0/1:11,5:32:16:0.313:2	0/1:0,25:31:25:1.00:2	./.	0/1:1,11:30:12:0.917:2	0/1:0,23:31:23:1.00:2
chr22	22869548	rs362011	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:27,5:31:32:0.156:2	0/1:15,8:31:23:0.348:2	./.	./.	0/1:2,23:30:25:0.920:2	0/1:18,7:33:25:0.280:2	0/1:11,5:32:16:0.313:2	0/1:0,25:31:25:1.00:2	./.	0/1:1,11:29:12:0.917:2	0/1:0,23:32:23:1.00:2
chr22	22869649	rs361721	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:29,14:33:43:0.326:2	0/1:21,9:31:30:0.300:2	./.	./.	0/1:0,35:30:35:1.00:2	0/1:24,13:30:37:0.351:2	0/1:0,28:30:28:1.00:2	0/1:0,33:29:33:1.00:2	./.	0/1:2,19:31:21:0.905:2	0/1:0,41:30:41:1.00:2
chr22	22869742	rs361959	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:59,44:32:103:0.427:2	0/1:42,25:32:67:0.373:2	0/1:9,5:31:14:0.357:2	./.	0/1:0,48:31:48:1.00:2	0/1:67,39:30:106:0.368:2	0/1:47,22:31:69:0.319:2	0/1:1,62:31:63:0.984:2	./.	0/1:5,56:31:61:0.918:2	0/1:0,110:31:110:1.00:2
chr22	22890492	rs13604	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:17,16:32:33:0.485:2	0/1:12,4:33:16:0.250:2	./.	./.	0/1:28,10:31:38:0.263:2	./.	./.	./.	./.	0/1:22,16:32:38:0.421:2	./.
chr22	22890552	rs61730840	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	22890752	rs17497512	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:7,8:32:15:0.533:2	0/1:6,3:31:9:0.333:2	./.	./.	0/1:8,7:32:15:0.467:2	./.	./.	./.	./.	0/1:9,12:31:21:0.571:2	./.
chr22	22890792	rs17497547	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:30:10:0.400:2	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.	./.	./.	./.	0/1:2,6:31:8:0.750:2	./.
chr22	22899234	rs1129172	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:32,35:30:67:0.522:2	0/1:14,20:29:34:0.588:2	0/1:0,6:31:6:1.00:2	0/1:0,59:30:59:1.00:2	./.	0/1:0,89:30:89:1.00:2	0/1:0,69:30:69:1.00:2	0/1:60,55:30:115:0.478:2	0/1:0,49:31:49:1.00:2	./.	0/1:0,69:29:69:1.00:2
chr22	22937231	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,4:32:33:0.121:2	./.	./.	./.	./.	./.	./.	./.
chr22	22937365	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,3:32:34:0.088:2	./.	./.	./.	./.	./.
chr22	22937402	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,3:32:34:0.088:2	./.	./.	./.	./.	./.
chr22	22977582	rs4050718	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:194,5:30:199:0.025:2	./.	0/1:73,8:29:82:0.099:2	./.	0/1:37,3:34:40:0.075:2	0/1:54,21:31:75:0.280:2	./.
chr22	22977640	rs113599461	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:170,12:30:182:0.066:2	0/1:149,8:30:157:0.051:2	./.	./.	0/1:185,6:31:191:0.031:2	./.	0/1:167,21:31:188:0.112:2	./.	0/1:81,15:33:96:0.156:2	./.	./.
chr22	22977647	rs200120701	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,9:32:194:0.046:2	./.	0/1:191,5:31:196:0.026:2	./.	./.	./.
chr22	22977653	rs2330724	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:138,8:31:146:0.055:2	./.	0/1:190,7:31:197:0.036:2	./.	0/1:184,4:33:188:0.021:2	./.	./.	./.
chr22	22977697	rs28688641	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:121,34:29:155:0.219:2	0/1:140,21:29:161:0.130:2	./.	./.	0/1:176,19:29:195:0.097:2	./.	0/1:115,41:29:156:0.263:2	./.	0/1:103,41:28:144:0.285:2	0/1:95,53:30:148:0.358:2	./.
chr22	22977703	rs199902008	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:116,33:32:149:0.221:2	0/1:138,19:32:157:0.121:2	./.	./.	0/1:173,17:31:190:0.089:2	./.	0/1:109,34:32:143:0.238:2	./.	0/1:106,42:33:148:0.284:2	0/1:97,47:31:144:0.326:2	./.
chr22	22977706	rs150479444	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:114,33:31:147:0.224:2	0/1:136,19:32:155:0.123:2	./.	./.	0/1:174,17:31:191:0.089:2	./.	0/1:105,34:31:139:0.245:2	./.	0/1:104,42:32:146:0.288:2	0/1:96,47:31:143:0.329:2	./.
chr22	22977725	rs4050719	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,99:28:143:0.692:2	0/1:25,97:28:122:0.795:2	0/1:0,15:29:15:1.00:2	0/1:1,96:29:97:0.990:2	./.	./.	0/1:46,64:27:110:0.582:2	0/1:0,163:28:163:1.00:2	./.	./.	0/1:0,76:27:76:1.00:2
chr22	22977734	rs149646609	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,81:33:135:0.600:2	./.	./.
chr22	22977791	rs200943031	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:120,28:32:148:0.189:2	0/1:61,14:32:75:0.187:2	./.	./.	./.	./.	0/1:50,19:30:69:0.275:2	./.	0/1:38,19:31:57:0.333:2	0/1:71,22:30:93:0.237:2	./.
chr22	22979734	rs202023127	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	./.	0/1:23,3:32:26:0.115:2	./.
chr22	22985303	rs6003123	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,7:31:16:0.438:2	0/1:8,4:32:12:0.333:2	0/1:0,3:32:3:1.00:2	0/1:0,7:32:7:1.00:2	./.	./.	0/1:0,5:31:5:1.00:2	0/1:12,8:32:20:0.400:2	./.	0/1:3,8:31:11:0.727:2	0/1:0,6:31:6:1.00:2
chr22	22985410	rs201551236	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2
chr22	22985443	rs71316770	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:32:6:0.500:2	./.	./.	./.
chr22	22985653	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:34:3:0.667:2	0/1:0,2:34:2:1.00:2	./.
chr22	22985746	rs201125234	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:27:10:0.300:2	./.	0/1:7,4:27:11:0.364:2	./.
chr22	22985781	rs202081752	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	./.	./.
chr22	22985819	rs199881569	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,5:34:10:0.500:2	0/1:2,4:33:6:0.667:2	./.	0/1:8,14:32:22:0.636:2	0/1:12,9:32:21:0.429:2	0/1:23,4:32:27:0.148:2	0/1:8,11:32:19:0.579:2	0/1:20,11:32:31:0.355:2	0/1:12,9:31:21:0.429:2	0/1:11,9:33:20:0.450:2	0/1:3,5:27:8:0.625:2
chr22	22985839	rs200862471	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:7,3:32:10:0.300:2	./.	./.	0/1:15,14:31:29:0.483:2	0/1:17,9:31:26:0.346:2	./.	0/1:12,14:31:26:0.538:2	0/1:29,8:32:37:0.216:2	0/1:20,4:33:24:0.167:2	0/1:17,6:32:23:0.261:2	./.
chr22	22985902	rs201146749	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,3:27:11:0.273:2	./.
chr22	22985938	rs377569280	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.
chr22	22986159	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,4:33:15:0.267:2	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:33:7:0.429:2	./.	./.
chr22	22986228	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,4:31:13:0.308:2	./.	./.	./.	./.	./.
chr22	22986501	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,10:32:53:0.189:2	0/1:28,11:31:39:0.282:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	22986606	rs200849081	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:82,105:29:187:0.561:2	0/1:84,104:28:188:0.553:2	0/1:5,42:29:47:0.894:2	0/1:98,93:28:191:0.487:2	./.	./.	0/1:6,179:29:185:0.968:2	0/1:126,70:29:196:0.357:2	0/1:76,61:30:137:0.445:2	./.	0/1:93,93:28:186:0.500:2
chr22	22986667	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,90:33:169:0.536:2	./.	./.
chr22	22986733	rs190807578	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:22,3:31:25:0.120:2	0/1:133,7:31:140:0.050:2	./.	./.	./.	./.	./.	./.	0/1:112,5:29:117:0.043:2
chr22	22986734	rs116046598	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,95:31:159:0.597:2	0/1:90,85:32:175:0.486:2	0/1:3,21:29:24:0.875:2	0/1:8,124:30:133:0.939:2	./.	./.	./.	0/1:96,81:31:177:0.458:2	./.	./.	0/1:5,104:31:109:0.954:2
chr22	22986738	rs370509605	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,3:32:24:0.125:2	0/1:128,4:32:132:0.030:2	./.	./.	0/1:109,6:24:116:0.052:2	./.	./.	./.	0/1:108,4:34:112:0.036:2
chr22	22986764	rs62228122	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,77:31:146:0.527:2	0/1:77,72:31:149:0.483:2	0/1:0,14:31:14:1.00:2	0/1:1,97:31:98:0.990:2	./.	./.	0/1:2,119:31:121:0.983:2	0/1:70,37:31:109:0.346:2	./.	./.	0/1:0,133:30:134:1.00:2
chr22	22986818	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,24:30:34:0.706:2	./.	./.	./.	./.
chr22	22988824	rs144960876	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:31:65:0.062:2
chr22	22988911	rs9612135	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:8,3:33:11:0.273:2	0/1:5,4:33:9:0.444:2	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.	0/1:16,10:31:26:0.385:2	./.	0/1:13,4:33:17:0.235:2	0/1:17,9:30:26:0.346:2
chr22	22988913	rs71316771	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:3,6:32:9:0.667:2	0/1:5,4:32:9:0.444:2	./.	./.	./.	./.	0/1:23,10:30:33:0.303:2	0/1:10,14:30:24:0.583:2	./.	./.	0/1:9,11:32:20:0.550:2
chr22	22988917	rs71316772	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:3,3:25:6:0.500:2	./.	./.	./.	./.	./.	0/1:21,8:25:29:0.276:2	0/1:10,12:27:22:0.545:2	./.	./.	0/1:10,6:27:16:0.375:2
chr22	22989237	rs60008056	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,33:30:56:0.589:2	./.	./.	./.	./.
chr22	22989256	rs2904923	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:32:65:1.00:2	0/1:0,27:32:27:1.00:2	0/1:1,12:32:13:0.923:2	0/1:3,97:32:100:0.970:2	./.	./.	0/1:0,60:32:60:1.00:2	0/1:0,98:32:98:1.00:2	0/1:34,21:33:55:0.382:2	0/1:65,56:32:121:0.463:2	0/1:0,104:31:104:1.00:2
chr22	22989270	rs2330126	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:64,25:30:89:0.281:2	0/1:22,18:32:40:0.450:2	0/1:9,6:30:15:0.400:2	./.	./.	./.	0/1:69,12:27:81:0.148:2	0/1:118,28:30:146:0.192:2	./.	./.	0/1:89,38:31:127:0.299:2
chr22	22989281	rs3966363	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:80,32:29:112:0.286:2	0/1:26,23:30:49:0.469:2	0/1:9,11:30:20:0.550:2	./.	./.	./.	0/1:75,18:28:93:0.194:2	0/1:137,40:30:177:0.226:2	./.	./.	0/1:96,49:29:145:0.338:2
chr22	22989520	rs141781442	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,94:30:194:0.485:2	./.	./.	./.	./.
chr22	22989705	rs138856814	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,17:32:42:0.405:2	./.	./.	./.	./.
chr22	23029263	rs443102	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:32:81:1.00:2	0/1:0,35:32:36:1.00:2	0/1:0,12:34:12:1.00:2	0/1:0,70:33:70:1.00:2	./.	0/1:48,53:33:101:0.525:2	0/1:0,72:33:72:1.00:2	0/1:3,123:32:126:0.976:2	0/1:0,42:34:42:1.00:2	0/1:0,56:33:56:1.00:2	0/1:0,98:33:98:1.00:2
chr22	23029511	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.	./.	./.	./.
chr22	23029526	rs3205084	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,22:32:64:0.344:2	0/1:26,25:33:51:0.490:2	./.	./.	./.	0/1:53,46:32:99:0.465:2	0/1:29,19:32:48:0.396:2	./.	./.	./.	./.
chr22	23029547	rs373673041	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,12:31:50:0.240:2	./.	./.	./.	./.	./.	./.	./.
chr22	23029557	rs372042849	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,8:31:42:0.195:2	./.	./.	./.	./.	./.	./.	./.
chr22	23029561	rs374595967	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,5:27:37:0.135:2	./.	./.	./.	./.	./.	./.	./.
chr22	23029564	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,5:27:37:0.135:2	./.	./.	./.	./.	./.	./.	./.
chr22	23029587	rs192338803	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,8:27:46:0.174:2	./.	./.	./.	./.	./.	./.	./.
chr22	23029601	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,43:33:90:0.478:2	./.	./.	./.
chr22	23029698	rs443756	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,92:29:92:1.00:2	0/1:0,41:28:41:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,93:30:93:1.00:2	0/1:118,7:31:125:0.056:2	0/1:73,52:30:125:0.416:2	0/1:2,113:30:115:0.983:2	0/1:0,136:29:136:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,108:29:108:1.00:2	0/1:0,105:29:106:1.00:2
chr22	23029718	rs199561156	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:79,4:32:83:0.048:2	./.	./.	./.	0/1:111,4:31:115:0.035:2	./.	0/1:99,8:32:107:0.075:2	0/1:120,7:31:127:0.055:2	./.	./.	0/1:88,6:32:94:0.064:2
chr22	23029736	rs186322651	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,12:32:54:0.222:2	./.	./.	./.	./.	./.	./.	./.
chr22	23040461	rs12166262	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,26:30:62:0.419:2	./.	./.	./.	./.
chr22	23040462	rs1312	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,13:33:13:1.00:2	0/1:0,30:32:30:1.00:2	./.	./.	0/1:35,27:31:62:0.435:2	0/1:0,66:32:66:1.00:2	0/1:11,10:34:21:0.476:2	0/1:0,55:33:55:1.00:2	0/1:0,25:32:25:1.00:2
chr22	23040487	rs12165881	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,28:30:61:0.459:2	./.	./.	./.	./.
chr22	23040743	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,20:31:30:0.690:2	./.	./.	./.	./.	./.	./.	./.
chr22	23040765	rs61732325	G	T,C	.	PASS	AC=1,1;AF=0.167,0.167;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0/2:29:10:0.600:2	./.	./.	./.	0/1:30:41:0.268:2	./.	./.	./.	./.
chr22	23040767	rs5751516	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:31:10:1.00:2	0/1:0,33:32:33:1.00:2	./.	./.	0/1:27,11:32:38:0.289:2	0/1:2,77:31:79:0.975:2	0/1:13,18:32:31:0.581:2	0/1:0,41:31:41:1.00:2	0/1:0,82:30:82:1.00:2
chr22	23040846	rs142300011	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,14:31:31:0.452:2	./.	./.	./.	./.
chr22	23040868	rs370898751	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,8:29:15:0.533:2	./.	./.	./.	./.	./.	./.	./.
chr22	23040881	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:34:13:0.462:2	./.	./.	./.	./.	./.	./.	./.
chr22	23047069	rs5751529	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:32:15:0.600:2	./.	0/1:45,39:31:84:0.464:2	0/1:30,28:32:58:0.483:2	./.	./.	./.	./.
chr22	23047104	rs5751530	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:31:10:0.500:2	./.	0/1:26,24:31:50:0.480:2	0/1:20,23:32:43:0.535:2	./.	./.	./.	./.
chr22	23047144	rs370918329	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,4:31:20:0.200:2	./.	./.	./.	./.	./.
chr22	23047146	rs78292630	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,10:29:24:0.435:2	./.	./.	./.	./.
chr22	23047147	rs76514756	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,9:29:26:0.360:2	./.	./.	./.	./.
chr22	23047290	rs9623875	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:31:12:0.500:2	./.	0/1:30,19:29:49:0.388:2	0/1:21,22:32:43:0.512:2	./.	./.	./.	./.
chr22	23047298	rs9623876	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,19:31:39:0.487:2	./.	./.	./.	./.
chr22	23054916	rs5759408	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,3:33:11:0.273:2	./.	0/1:25,13:31:38:0.342:2	./.	./.	./.	./.	0/1:14,6:32:20:0.300:2
chr22	23055421	rs1985790	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:14,8:32:22:0.364:2	0/1:5,6:32:11:0.545:2	./.	0/1:2,3:32:5:0.600:2	./.	0/1:15,15:31:30:0.500:2	0/1:0,8:29:8:1.00:2	0/1:0,24:32:24:1.00:2	0/1:1,3:35:4:0.750:2	./.	./.
chr22	23055440	rs1008910	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:18,10:32:28:0.357:2	0/1:8,6:28:14:0.429:2	./.	0/1:3,3:32:6:0.500:2	./.	0/1:19,17:30:36:0.472:2	0/1:0,10:32:10:1.00:2	0/1:0,34:31:34:1.00:2	0/1:2,4:33:6:0.667:2	0/1:16,15:32:31:0.484:2	0/1:0,27:31:27:1.00:2
chr22	23055441	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,3:34:36:0.083:2	./.	./.	./.
chr22	23055497	rs145459282	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,14:28:30:0.467:2	0/1:10,7:32:17:0.412:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	23055533	rs4446155	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:18,23:32:41:0.561:2	0/1:13,7:31:20:0.350:2	./.	0/1:5,5:32:10:0.500:2	./.	0/1:20,15:30:36:0.429:2	0/1:19,9:32:28:0.321:2	0/1:0,49:31:49:1.00:2	./.	./.	./.
chr22	23055537	rs376214331	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,13:32:51:0.255:2	./.	./.	./.
chr22	23055539	rs1985791	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:20,21:30:41:0.512:2	0/1:13,7:32:20:0.350:2	./.	0/1:5,4:31:9:0.444:2	./.	0/1:21,18:29:39:0.462:2	0/1:22,8:30:30:0.267:2	0/1:0,49:30:49:1.00:2	0/1:5,4:32:9:0.444:2	./.	./.
chr22	23055595	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:32:45:0.089:2	./.
chr22	23055628	rs11558644	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,7:34:52:0.135:2	./.
chr22	23055667	rs148834864	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:32:58:0.069:2	./.
chr22	23063178	rs12158984	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,35:32:78:0.449:2	./.	./.	./.	./.	./.
chr22	23063196	rs111375315	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,3:30:18:0.167:2	./.	./.	./.	./.	./.	./.	./.
chr22	23063359	rs149439245	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,10:32:41:0.244:2	./.
chr22	23063394	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,6:30:55:0.109:2	./.
chr22	23063406	rs193091235	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:30:55:0.073:2	./.
chr22	23063465	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,11:30:58:0.190:2	./.
chr22	23063625	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,6:32:45:0.133:2	./.
chr22	23077555	rs4822296	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,32:32:63:0.508:2	0/1:29,33:32:62:0.532:2	0/1:4,5:33:9:0.556:2	0/1:4,14:33:18:0.778:2	0/1:34,78:33:112:0.696:2	0/1:35,50:32:85:0.588:2	0/1:0,108:33:108:1.00:2	0/1:2,91:32:94:0.978:2	0/1:26,18:34:44:0.409:2	0/1:38,22:33:60:0.367:2	0/1:0,111:33:111:1.00:2
chr22	23090360	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,21:33:45:0.467:2	./.	./.
chr22	23090399	rs61733354	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,43:31:102:0.422:2	./.	./.	./.	./.	./.
chr22	23101216	rs4822301	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,6:29:43:0.140:2	./.	./.	./.	./.	0/1:47,21:28:68:0.309:2	./.	0/1:1,9:29:10:0.900:2	./.	./.	0/1:0,7:29:7:1.00:2
chr22	23101221	rs4822302	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,5:29:41:0.122:2	./.	./.	./.	./.	0/1:46,25:28:71:0.352:2	./.	0/1:1,8:30:9:0.889:2	./.	./.	0/1:0,4:27:4:1.00:2
chr22	23101280	rs1894244	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:33,5:32:38:0.132:2	./.	./.	./.	0/1:30,7:32:37:0.189:2	0/1:34,16:32:50:0.320:2	0/1:0,17:31:17:1.00:2	0/1:0,11:31:11:1.00:2	./.	./.	0/1:0,16:30:16:1.00:2
chr22	23101301	rs4822305	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:23,7:31:30:0.233:2	./.	./.	./.	0/1:28,9:30:37:0.243:2	0/1:28,16:31:44:0.364:2	0/1:0,24:30:24:1.00:2	0/1:0,14:28:14:1.00:2	0/1:7,4:32:11:0.364:2	./.	0/1:0,23:31:23:1.00:2
chr22	23101442	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,3:32:19:0.158:2	./.	./.
chr22	23101487	rs371001253	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:71,4:32:75:0.053:2	./.	./.	./.	./.	./.	0/1:78,20:32:98:0.204:2	./.	./.	./.	./.
chr22	23101523	rs3737543	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:51,37:31:88:0.420:2	0/1:44,21:32:65:0.323:2	./.	./.	./.	./.	0/1:18,57:31:75:0.760:2	0/1:6,44:31:50:0.880:2	0/1:4,14:32:18:0.778:2	./.	./.
chr22	23101559	rs4134484	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,42:32:87:0.483:2	0/1:32,28:31:60:0.467:2	0/1:9,4:26:13:0.308:2	0/1:6,9:32:15:0.600:2	0/1:33,21:31:54:0.389:2	0/1:53,30:31:83:0.361:2	0/1:0,47:32:47:1.00:2	0/1:3,41:31:44:0.932:2	0/1:6,14:33:20:0.700:2	0/1:40,24:32:64:0.375:2	0/1:1,98:32:99:0.990:2
chr22	23101568	rs28561583	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,3:31:13:0.231:2	./.	./.	0/1:44,34:33:78:0.436:2	0/1:39,4:31:43:0.093:2	./.	./.	./.	./.
chr22	23101601	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,5:33:70:0.071:2	./.	./.	./.
chr22	23101698	rs16989343	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,4:31:101:0.040:2	./.	./.	./.	./.	0/1:40,53:31:93:0.570:2	./.	0/1:95,8:31:103:0.078:2	./.	./.	./.
chr22	23114327	rs6003299	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:44,42:30:86:0.488:2	0/1:23,19:29:42:0.452:2	0/1:4,3:32:7:0.429:2	./.	0/1:87,68:30:155:0.439:2	0/1:57,48:29:105:0.457:2	0/1:45,35:30:80:0.438:2	0/1:0,79:29:79:1.00:2	0/1:6,14:30:20:0.700:2	0/1:34,5:30:39:0.128:2	0/1:1,44:29:45:0.978:2
chr22	23114350	rs5996382	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:41,46:30:87:0.529:2	0/1:23,20:29:43:0.465:2	./.	./.	0/1:95,74:29:169:0.438:2	0/1:62,67:28:129:0.519:2	0/1:70,36:30:106:0.340:2	0/1:0,84:29:84:1.00:2	0/1:9,12:31:21:0.571:2	0/1:35,11:30:46:0.239:2	0/1:1,47:30:48:0.979:2
chr22	23114789	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,9:25:15:0.600:2	./.	./.	./.
chr22	23114935	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,20:32:35:0.571:2	./.	./.	./.
chr22	23114938	rs2073450	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,18:32:43:0.419:2
chr22	23114993	rs2073451	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:21,29:30:50:0.580:2	0/1:7,10:30:17:0.588:2	./.	./.	0/1:13,12:29:25:0.480:2	./.	0/1:16,21:30:37:0.568:2	0/1:0,33:30:33:1.00:2	0/1:2,7:31:9:0.778:2	0/1:26,7:30:33:0.212:2	./.
chr22	23115001	rs2073452	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,14:33:37:0.378:2
chr22	23115043	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,10:31:28:0.357:2	./.	./.	./.
chr22	23135002	rs75816796	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,3:27:15:0.200:2	./.	./.	0/1:39,10:27:49:0.204:2	0/1:12,6:28:18:0.333:2	./.	./.	./.
chr22	23135285	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:31:36:0.111:2	./.	./.	./.
chr22	23135286	rs369852285	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:32:35:0.114:2	./.	./.	./.
chr22	23135292	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,4:32:34:0.118:2	./.	./.	./.
chr22	23135447	rs16989342	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,3:29:12:0.250:2	./.	./.	./.
chr22	23154582	rs1065464	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,4:32:19:0.211:2	0/1:14,15:30:29:0.517:2	0/1:27,20:33:47:0.426:2
chr22	23161646	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,35:33:73:0.479:2	./.	./.	./.	./.
chr22	23162021	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,5:33:37:0.135:2	./.
chr22	23165340	rs5996397	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,11:32:11:1.00:2	0/1:13,5:35:18:0.278:2	0/1:24,20:33:44:0.455:2	0/1:23,24:34:47:0.511:2
chr22	23165712	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,3:34:14:0.214:2	./.	./.
chr22	23223278	rs394321	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.
chr22	23223329	rs373803208	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,18:28:31:0.581:2
chr22	23223383	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:30:36:0.111:2
chr22	23223388	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,4:27:39:0.103:2
chr22	23223389	rs145290417	G	C,A	.	PASS	AC=1,1;AF=0.167,0.167;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/2:31:35:0.086:2	./.	./.	./.	./.	0/1:31:38:0.105:2
chr22	23223394	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,23:28:42:0.548:2
chr22	23223400	rs61731688	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,20:33:43:0.465:2	0/1:21,8:32:29:0.276:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	23223419	rs61731686	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,4:30:22:0.182:2	./.	./.	./.	./.
chr22	23223420	rs73880715	C	T,G	.	PASS	AC=1,1;AF=0.167,0.167;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/2:33:46:0.109:2	./.	./.	./.	./.	0/1:30:52:0.154:2
chr22	23223436	rs373029284	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,10:30:54:0.185:2
chr22	23223438	rs143830449	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,5:29:55:0.091:2
chr22	23223439	rs61731685	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,15:30:55:0.278:2
chr22	23223507	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,11:28:46:0.239:2
chr22	23223563	rs151220536	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,13:30:69:0.188:2	./.	./.	./.	./.	0/1:12,5:32:17:0.294:2	./.
chr22	23223573	rs145570740	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,10:33:36:0.278:2
chr22	23230300	rs382768	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,4:32:14:0.286:2	./.	./.	./.
chr22	23230315	rs148489860	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,12:31:59:0.203:2	0/1:33,3:32:36:0.083:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	23230360	rs6003368	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,5:27:12:0.417:2	./.
chr22	23230399	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,25:31:60:0.417:2	./.	./.	./.	./.	./.
chr22	23237664	rs372378544	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,4:29:64:0.063:2	./.	./.	./.	0/1:87,10:28:97:0.103:2	./.	./.	./.
chr22	23237689	rs373828711	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,6:30:63:0.095:2	./.	./.	./.	0/1:101,6:30:107:0.056:2	./.	./.	./.
chr22	23237705	rs192388840	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,5:27:86:0.058:2	./.	./.	./.
chr22	23237723	.	A	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,5:31:49:0.102:2	./.	./.	0/1:125,5:29:130:0.038:2	0/1:69,10:30:79:0.127:2	./.	./.	0/1:153,6:30:159:0.038:2
chr22	23237736	rs370560112	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,6:32:115:0.052:2	./.	./.	0/1:153,4:32:157:0.025:2	./.	0/1:109,7:29:116:0.060:2	0/1:62,6:30:68:0.088:2	./.	./.	0/1:161,10:32:172:0.058:2
chr22	23237766	rs376897025	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:146,4:33:150:0.027:2	./.	./.	./.	0/1:141,4:32:145:0.028:2	./.	0/1:95,5:29:100:0.050:2	./.	./.	./.	./.
chr22	23237781	rs369300114	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:118,12:31:130:0.092:2	0/1:55,9:31:64:0.141:2	./.	./.	0/1:105,10:31:115:0.087:2	0/1:126,4:31:130:0.031:2	0/1:83,5:32:88:0.057:2	0/1:28,4:29:32:0.125:2	./.	0/1:72,6:29:78:0.077:2	0/1:145,8:31:153:0.052:2
chr22	23237801	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:91,5:32:96:0.052:2	./.	./.	./.	0/1:89,4:30:93:0.043:2	./.	./.	./.	./.	./.	0/1:120,5:29:125:0.040:2
chr22	23237860	rs28477498	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:27:7:0.429:2	./.	./.	./.
chr22	23241705	rs62218846	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,12:32:12:1.00:2	0/1:1,14:31:15:0.933:2	./.	./.	0/1:13,3:32:16:0.188:2	0/1:14,4:31:18:0.222:2	0/1:0,9:30:9:1.00:2	0/1:0,3:31:3:1.00:2	./.	./.	0/1:9,5:32:14:0.357:2
chr22	23241772	rs148186519	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,4:32:12:0.333:2	./.	./.	./.
chr22	23241799	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:31:53:0.075:2	./.	./.	./.	./.
chr22	23241800	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:32:54:0.074:2	./.	./.	./.	./.
chr22	23241804	rs112327205	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:31:55:0.073:2	./.	./.	./.	./.
chr22	23243193	rs143846191	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,5:32:17:0.294:2	0/1:133,45:30:178:0.253:2	0/1:177,17:31:194:0.088:2	0/1:162,28:29:190:0.147:2	0/1:162,34:30:196:0.173:2	./.	0/1:115,19:32:134:0.142:2	0/1:74,66:31:141:0.471:2	0/1:161,17:29:181:0.096:2
chr22	23243235	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,40:29:188:0.213:2	./.	./.
chr22	23243365	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:35:193:0.026:2	./.	./.	./.	./.
chr22	23243402	rs201635214	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:178,17:30:195:0.087:2	0/1:107,7:32:114:0.061:2	0/1:11,3:31:14:0.214:2	0/1:42,29:31:71:0.408:2	0/1:174,16:31:190:0.084:2	0/1:168,17:30:185:0.092:2	0/1:163,17:31:180:0.094:2	0/1:43,16:32:59:0.271:2	0/1:64,5:31:69:0.072:2	0/1:97,20:31:117:0.171:2	0/1:165,23:31:190:0.122:2
chr22	23247082	rs2009433	C	T,G	.	PASS	AC=2,3;AF=0.133,0.200;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9-variant10-variant11	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	0/2:32:70:0.471:2	0/2:32:36:0.389:2	./.	0/2:28:26:0.154:2	./.	./.	./.	./.	0/1:32:18:0.556:2	0/1:31:35:1.00:2	./.
chr22	23247169	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,5:31:79:0.063:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,5:30:175:0.029:2
chr22	23247170	rs35759061	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,5:29:78:0.064:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:32:175:0.023:2
chr22	23247174	rs17851780	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:30:124:0.032:2	0/1:72,5:30:77:0.065:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	23247200	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:32:29:0.138:2	./.	./.
chr22	23248549	rs199698958	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:30,5:29:35:0.143:2	0/1:136,53:31:189:0.280:2	0/1:170,23:30:193:0.119:2	0/1:152,33:31:185:0.178:2	0/1:143,46:31:189:0.243:2	./.	0/1:130,19:32:149:0.128:2	0/1:85,103:31:188:0.548:2	0/1:159,18:29:177:0.102:2
chr22	23248591	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,17:29:188:0.090:2	./.	./.
chr22	23248758	rs1059142	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,76:32:177:0.429:2	0/1:97,79:32:176:0.449:2	0/1:16,19:30:35:0.543:2	0/1:53,108:31:161:0.671:2	0/1:98,90:31:188:0.479:2	0/1:70,115:31:185:0.622:2	0/1:91,101:31:192:0.526:2	0/1:124,59:31:183:0.322:2	0/1:113,47:31:161:0.294:2	0/1:15,150:31:165:0.909:2	0/1:91,98:31:189:0.519:2
chr22	23256464	rs463185	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,88:28:88:1.00:2	0/1:0,48:29:48:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,121:28:121:1.00:2	0/1:0,80:29:80:1.00:2	0/1:0,97:30:97:1.00:2	0/1:0,91:29:91:1.00:2	0/1:0,107:28:107:1.00:2	0/1:0,73:29:73:1.00:2	0/1:0,116:29:116:1.00:2	0/1:0,98:28:98:1.00:2
chr22	23263602	rs373405	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:30:95:1.00:2	0/1:0,72:31:72:1.00:2	0/1:1,6:30:7:0.857:2	0/1:0,91:30:91:1.00:2	0/1:1,113:30:114:0.991:2	0/1:0,111:30:111:1.00:2	0/1:1,122:30:123:0.992:2	0/1:0,138:30:138:1.00:2	0/1:0,85:31:85:1.00:2	0/1:0,116:30:116:1.00:2	0/1:0,114:30:114:1.00:2
chr22	23264785	rs4822348	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,78:31:187:0.417:2	./.	./.	0/1:128,69:31:197:0.350:2	./.	./.	./.	./.
chr22	23264852	rs143968317	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:176,7:31:183:0.038:2	./.	0/1:182,5:29:187:0.027:2	0/1:188,4:32:193:0.021:2	0/1:167,14:30:181:0.077:2	0/1:178,7:31:185:0.038:2	./.	./.	0/1:176,7:29:183:0.038:2	./.
chr22	23264864	rs73880723	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,29:30:54:0.537:2	./.	./.	./.	0/1:110,72:29:182:0.396:2	./.	./.	./.	./.
chr22	23264900	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,11:31:183:0.060:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	23264916	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,9:27:153:0.059:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	23264934	rs370597120	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,5:30:126:0.040:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	23265027	rs146393130	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,3:34:73:0.041:2	./.	./.	./.
chr22	23438191	rs1805058	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,8:31:20:0.400:2	0/1:3,5:30:8:0.625:2	./.	./.	./.	0/1:3,9:29:12:0.750:2	./.	./.	./.	./.	./.
chr22	23438374	rs146984912	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,30:32:42:0.732:2
chr22	23482460	rs4822360	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,47:32:92:0.511:2	0/1:19,24:33:43:0.558:2	0/1:9,5:33:15:0.357:2	0/1:55,61:32:116:0.526:2	0/1:94,67:32:161:0.416:2	0/1:66,68:33:134:0.507:2	./.	0/1:86,70:32:156:0.449:2	0/1:60,69:34:129:0.535:2	0/1:0,84:33:84:1.00:2	0/1:1,90:32:91:0.989:2
chr22	23482483	rs35211242	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:55,47:32:102:0.461:2	0/1:42,21:31:63:0.333:2	./.	0/1:78,63:32:141:0.447:2	0/1:84,96:31:180:0.533:2	./.	./.	0/1:81,98:31:179:0.547:2	./.	./.	./.
chr22	23498329	rs201693487	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:23,5:33:28:0.179:2	./.	./.	0/1:28,4:32:32:0.125:2	./.	./.	./.	./.	./.	./.	./.
chr22	23498330	rs200147142	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:23,5:33:28:0.179:2	./.	./.	0/1:26,4:33:30:0.133:2	./.	./.	./.	./.	./.	./.	./.
chr22	23498334	rs200959762	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:22,5:30:27:0.185:2	./.	./.	0/1:25,4:30:29:0.138:2	./.	./.	./.	./.	./.	./.	./.
chr22	23503121	rs5759611	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,61:33:109:0.560:2	0/1:31,21:32:52:0.404:2	0/1:9,5:32:14:0.357:2	0/1:79,57:32:136:0.419:2	./.	0/1:68,61:32:129:0.473:2	./.	./.	./.	./.	./.
chr22	23503170	rs5759612	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:48,30:31:78:0.385:2	0/1:19,20:31:39:0.513:2	./.	0/1:38,53:30:91:0.582:2	0/1:0,77:30:77:1.00:2	./.	./.	0/1:3,93:30:96:0.969:2	0/1:44,37:30:81:0.457:2	0/1:0,51:31:51:1.00:2	0/1:0,63:31:63:1.00:2
chr22	23503756	rs737818	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,14:33:17:0.824:2	0/1:4,5:31:9:0.556:2	./.	0/1:8,6:32:14:0.429:2	0/1:0,12:32:12:1.00:2	./.	./.	0/1:0,11:31:11:1.00:2	0/1:15,10:34:25:0.400:2	0/1:0,12:32:12:1.00:2	0/1:0,15:32:15:1.00:2
chr22	23523630	rs5751602	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:5,4:28:9:0.444:2	0/1:5,5:30:10:0.500:2	./.	0/1:16,17:27:33:0.515:2	./.	0/1:15,12:27:27:0.444:2	./.	./.	./.	./.	./.
chr22	23603166	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:30:55:0.073:2	./.
chr22	23627369	rs140504	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,26:33:62:0.419:2	0/1:13,17:30:30:0.567:2	0/1:0,2:32:2:1.00:2	0/1:34,27:32:61:0.443:2	0/1:2,62:32:64:0.969:2	0/1:0,52:32:52:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,54:32:54:1.00:2	0/1:33,25:33:58:0.431:2	0/1:0,36:33:36:1.00:2	0/1:0,48:32:48:1.00:2
chr22	23631801	rs2227939	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,124:32:124:1.00:2	./.	./.	0/1:69,44:31:113:0.389:2	./.	./.	0/1:1,67:31:68:0.985:2
chr22	23632513	rs16802	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,25:31:25:1.00:2	./.	./.	0/1:35,24:31:59:0.407:2	./.	./.	0/1:0,58:31:58:1.00:2
chr22	23651619	rs11558694	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,38:31:99:0.384:2	0/1:37,25:31:62:0.403:2	./.	./.	./.	0/1:144,7:30:151:0.046:2	./.	0/1:187,5:32:192:0.026:2	./.	./.	./.
chr22	23654017	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:166,9:28:175:0.051:2	./.	0/1:164,7:30:171:0.041:2	./.	0/1:179,11:31:190:0.058:2	0/1:136,4:31:140:0.029:2	./.	./.
chr22	23656786	rs56265970	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:155,5:27:160:0.031:2	./.	./.	./.	0/1:154,35:31:189:0.185:2	./.	0/1:172,6:32:178:0.034:2	./.	./.	0/1:182,5:32:188:0.027:2	./.
chr22	23656790	rs56365112	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:151,36:32:187:0.193:2	./.	./.	./.	./.	0/1:180,4:33:186:0.022:2	./.
chr22	23656812	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:170,11:33:181:0.061:2	./.	0/1:163,5:34:168:0.030:2	./.	./.	0/1:157,4:32:161:0.025:2	./.
chr22	23656859	rs55715766	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:98,5:32:103:0.049:2	0/1:54,4:34:58:0.069:2	./.	0/1:100,6:30:106:0.057:2	0/1:103,16:29:119:0.134:2	0/1:118,10:32:128:0.078:2	0/1:103,6:31:109:0.055:2	0/1:129,7:33:136:0.051:2	0/1:90,4:33:94:0.043:2	./.	0/1:83,5:33:88:0.057:2
chr22	23915546	rs75088277	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,26:32:72:0.361:2	0/1:19,28:32:47:0.596:2	./.	./.	./.	./.	./.	./.	0/1:35,58:33:94:0.624:2	./.	./.
chr22	23915620	rs139571703	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,18:31:26:0.692:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	23915631	rs145176864	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,17:31:26:0.654:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	23915696	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:33:131:0.031:2	./.	./.
chr22	23917192	rs116041505	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,17:31:54:0.315:2	0/1:16,12:32:28:0.429:2	./.	./.	./.	./.	./.	./.	0/1:34,22:33:56:0.393:2	./.	./.
chr22	23917200	rs116275804	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,17:31:53:0.321:2	0/1:17,12:32:29:0.414:2	./.	./.	./.	./.	./.	./.	0/1:36,21:32:58:0.368:2	./.	./.
chr22	23959752	rs148388475	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,13:30:77:0.169:2	./.	0/1:61,12:30:73:0.164:2	./.	0/1:69,9:32:78:0.115:2	0/1:68,9:33:77:0.117:2	./.	0/1:78,7:33:85:0.082:2
chr22	23959852	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,8:33:137:0.058:2	./.	0/1:120,11:32:131:0.084:2	./.	./.	0/1:134,6:33:140:0.043:2	./.	./.
chr22	23974200	rs3827318	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,52:32:115:0.452:2	./.	0/1:56,52:32:108:0.481:2	./.	0/1:58,46:32:104:0.442:2	./.	./.	./.
chr22	24034288	rs738786	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,26:29:67:0.388:2	0/1:22,16:28:38:0.421:2	0/1:0,3:33:3:1.00:2	0/1:52,32:30:84:0.381:2	0/1:0,62:29:62:1.00:2	0/1:38,33:29:71:0.465:2	0/1:67,41:29:108:0.380:2	0/1:56,44:29:100:0.440:2	./.	0/1:0,54:30:54:1.00:2	0/1:31,30:30:61:0.492:2
chr22	24035970	rs2070446	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,29:31:81:0.358:2	0/1:23,25:32:48:0.521:2	0/1:0,19:31:19:1.00:2	0/1:0,151:31:151:1.00:2	0/1:4,185:31:190:0.979:2	0/1:0,133:31:133:1.00:2	0/1:105,88:31:193:0.456:2	0/1:94,68:32:162:0.420:2	0/1:61,62:32:123:0.504:2	0/1:0,93:32:93:1.00:2	0/1:1,101:32:102:0.990:2
chr22	24036544	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:33:128:0.031:2	./.	./.	./.	./.	./.
chr22	24036563	rs2070447	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,55:32:119:0.462:2	./.	0/1:71,65:32:136:0.478:2	./.	0/1:110,67:32:177:0.379:2	./.	./.	./.
chr22	24038847	rs1007298	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,25:31:59:0.424:2	0/1:18,23:32:41:0.561:2	0/1:0,17:32:17:1.00:2	0/1:0,122:32:122:1.00:2	0/1:0,110:32:110:1.00:2	0/1:0,118:32:118:1.00:2	0/1:123,66:31:189:0.349:2	0/1:98,71:32:169:0.420:2	0/1:57,46:33:103:0.447:2	0/1:0,94:31:94:1.00:2	0/1:0,87:32:87:1.00:2
chr22	24086107	rs5759985	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:54,35:29:89:0.393:2	0/1:27,28:30:55:0.509:2	./.	0/1:57,59:30:116:0.509:2	./.	0/1:1,121:29:122:0.992:2	0/1:1,109:29:110:0.991:2	0/1:75,50:30:125:0.400:2	0/1:53,55:31:108:0.509:2	./.	0/1:74,50:29:124:0.403:2
chr22	24087319	rs2070451	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,39:31:63:0.619:2	0/1:32,11:32:43:0.256:2	./.	./.	./.	0/1:32,17:31:49:0.347:2	./.	0/1:20,17:32:37:0.459:2	./.	./.	./.
chr22	24106448	rs2298375	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,25:31:48:0.521:2	0/1:10,16:32:26:0.615:2	./.	./.	./.	0/1:40,25:31:65:0.385:2	./.	./.	./.	./.	./.
chr22	24108412	rs80027270	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:8,12:32:20:0.600:2	0/1:10,7:31:17:0.412:2	0/1:2,6:31:8:0.750:2	0/1:0,38:30:38:1.00:2	0/1:0,40:30:40:1.00:2	0/1:28,24:30:52:0.462:2	0/1:41,22:30:63:0.349:2	0/1:0,40:30:40:1.00:2	0/1:0,42:32:42:1.00:2	0/1:24,18:30:42:0.429:2	0/1:0,18:30:19:1.00:2
chr22	24121378	rs738792	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,8:29:8:1.00:2	0/1:0,6:32:6:1.00:2	./.	0/1:0,14:31:14:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,9:24:9:1.00:2	0/1:0,4:27:4:1.00:2	0/1:2,4:31:6:0.667:2	0/1:0,5:25:5:1.00:2
chr22	24159024	rs145934279	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,23:33:69:0.333:2
chr22	24167513	rs2229354	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,20:32:47:0.426:2	0/1:14,13:32:27:0.481:2	./.	./.	./.	0/1:22,22:32:44:0.500:2	0/1:31,41:33:72:0.569:2	./.	./.	./.	./.
chr22	24179132	rs1128127	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,48:30:91:0.527:2	0/1:19,25:30:44:0.568:2	./.	./.	./.	0/1:51,73:30:125:0.589:2	0/1:38,68:31:106:0.642:2	./.	./.	./.	./.
chr22	24179922	rs3177243	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:33:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	0/1:39,36:32:75:0.480:2
chr22	24212248	rs60719441	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,40:33:42:0.952:2	0/1:17,18:32:35:0.514:2	./.	./.	./.	./.	./.	0/1:20,16:32:36:0.444:2
chr22	24224655	rs9608213	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	0/1:0,5:34:5:1.00:2	0/1:0,3:33:3:1.00:2	./.
chr22	24224659	rs9612499	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:2,4:30:6:0.667:2	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	./.	0/1:0,6:30:6:1.00:2	0/1:0,2:31:2:1.00:2	./.
chr22	24225017	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,43:32:108:0.398:2	./.	./.
chr22	24226580	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:33:182:0.022:2	./.	./.	./.
chr22	24226890	rs60699980	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,50:31:147:0.340:2	./.	./.	./.	./.
chr22	24236697	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:33:75:0.053:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	24237463	rs2070767	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:31:61:1.00:2	0/1:1,25:31:26:0.962:2	0/1:2,4:31:6:0.667:2	0/1:0,73:31:73:1.00:2	0/1:0,70:31:70:1.00:2	0/1:0,88:32:88:1.00:2	0/1:49,48:31:97:0.495:2	0/1:68,51:31:119:0.429:2	0/1:0,89:32:89:1.00:2	0/1:0,74:31:74:1.00:2	0/1:63,37:31:100:0.370:2
chr22	24238079	rs34383331	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:42,46:32:88:0.523:2	0/1:19,26:31:45:0.578:2	0/1:11,3:31:14:0.214:2	./.	./.	./.	./.	0/1:69,55:31:124:0.444:2	./.	./.	./.
chr22	24299924	rs201431473	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,76:30:187:0.406:2	0/1:94,81:30:176:0.463:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	24300059	rs200376763	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,56:31:185:0.303:2	./.	0/1:139,55:31:194:0.284:2	./.	./.	0/1:145,35:32:180:0.194:2
chr22	24300102	rs201615466	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,118:30:191:0.618:2	./.	./.	0/1:0,191:31:191:1.00:2	0/1:193,4:32:197:0.020:2	./.	0/1:68,122:30:190:0.642:2	./.
chr22	24300108	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:135,60:31:195:0.308:2	./.	./.	./.	./.	./.	./.	./.
chr22	24300540	rs144128236	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:130,65:31:195:0.333:2	0/1:99,95:31:194:0.490:2	./.	./.	./.	./.	./.	./.
chr22	24300634	rs56104230	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,107:30:107:1.00:2	0/1:0,98:30:98:1.00:2	0/1:0,32:30:32:1.00:2	0/1:1,133:30:134:0.993:2	0/1:0,134:30:134:1.00:2	0/1:0,139:30:139:1.00:2	0/1:1,149:31:151:0.993:2	0/1:0,129:31:129:1.00:2	0/1:2,114:31:117:0.983:2	0/1:0,125:31:126:1.00:2	0/1:85,106:30:191:0.555:2
chr22	24300645	rs138877875	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,7:31:149:0.047:2	./.	./.	./.
chr22	24300780	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,5:28:192:0.026:2	./.	./.	./.	./.
chr22	24302486	rs185856170	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.	0/1:0,30:26:30:1.00:2	0/1:2,21:26:23:0.913:2	0/1:0,19:25:19:1.00:2	./.	0/1:0,17:26:17:1.00:2	0/1:1,54:26:55:0.982:2
chr22	24309147	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,120:32:185:0.649:2	./.	./.	0/1:84,96:32:180:0.533:2	./.	./.	./.	./.
chr22	24309745	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,58:30:119:0.487:2	0/1:56,23:31:79:0.291:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	24315379	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,118:30:190:0.621:2	./.	./.	0/1:115,82:30:197:0.416:2	./.	./.	./.	./.
chr22	24315447	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:31:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	24315961	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,62:31:136:0.456:2	0/1:41,31:32:72:0.431:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	24316559	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,115:33:171:0.673:2	./.	./.	0/1:105,90:32:195:0.462:2	./.	./.	./.	./.
chr22	24323131	rs55716339	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,66:33:194:0.340:2	./.	0/1:143,53:33:196:0.270:2	./.	./.	./.
chr22	24323227	rs76498342	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,60:31:193:0.311:2	./.	0/1:144,46:31:190:0.242:2	./.	./.	./.
chr22	24325062	rs78284383	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,95:31:192:0.495:2	./.	0/1:101,92:30:193:0.477:2	./.	./.	./.
chr22	24325095	rs74487784	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,98:29:103:0.951:2	0/1:5,66:29:71:0.930:2	0/1:0,11:27:11:1.00:2	0/1:1,108:29:109:0.991:2	0/1:0,130:28:130:1.00:2	0/1:146,45:28:191:0.236:2	0/1:1,149:29:150:0.993:2	0/1:145,45:29:190:0.237:2	0/1:2,117:30:119:0.983:2	0/1:2,122:29:124:0.984:2	0/1:137,50:30:187:0.267:2
chr22	24325167	rs4987176	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:140,54:30:194:0.278:2	0/1:99,95:31:194:0.490:2	./.	./.	./.	./.	./.	./.
chr22	24325599	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:143,50:31:193:0.259:2	./.	./.	./.	./.	./.	./.	./.
chr22	24325605	rs201689425	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,119:30:194:0.613:2	0/1:194,5:27:199:0.025:2	./.	0/1:5,187:31:192:0.974:2	./.	./.	0/1:64,132:30:196:0.673:2	./.
chr22	24325648	rs201176441	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,67:31:192:0.349:2	./.	0/1:143,52:32:195:0.267:2	./.	./.	0/1:136,52:32:188:0.277:2
chr22	24325783	rs200087397	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,70:30:165:0.424:2	0/1:90,67:31:159:0.427:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	24373149	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:32:188:0.021:2
chr22	24373735	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,5:29:110:0.045:2	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.
chr22	24373791	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,6:27:99:0.061:2	./.	./.	./.	0/1:111,4:30:116:0.035:2	./.	./.	./.
chr22	24384219	rs56106137	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:30:13:0.538:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	24451407	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:33:131:0.031:2	./.
chr22	24459438	rs762273	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,182:32:184:0.989:2	0/1:0,94:32:94:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,170:33:170:1.00:2	0/1:0,177:33:177:1.00:2	0/1:0,179:32:179:1.00:2	0/1:0,172:33:172:1.00:2	0/1:2,178:32:180:0.989:2	0/1:0,185:33:185:1.00:2	0/1:0,187:32:187:1.00:2	0/1:0,175:32:176:1.00:2
chr22	24463087	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:32:97:0.041:2	./.
chr22	24468386	rs17854874	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,147:32:151:0.974:2	./.	./.	./.	0/1:71,68:33:139:0.489:2	./.	0/1:46,37:33:83:0.446:2
chr22	24481006	rs149291554	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,36:33:95:0.379:2	0/1:33,23:33:56:0.411:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	24487739	rs117908385	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,42:30:100:0.420:2	./.	./.
chr22	24564477	rs17854875	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,124:32:126:0.984:2	./.	./.	./.	0/1:76,82:33:158:0.519:2	./.	0/1:62,71:31:133:0.534:2
chr22	24573558	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,4:31:40:0.100:2	./.	./.	./.	./.	./.	./.	./.
chr22	24573761	rs145349240	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,73:33:140:0.521:2
chr22	24579049	rs62231981	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:50,18:31:68:0.265:2	0/1:23,7:32:30:0.233:2	0/1:16,6:32:22:0.273:2	./.	0/1:66,51:31:117:0.436:2	0/1:90,59:31:149:0.396:2	0/1:73,72:31:145:0.497:2	0/1:84,80:32:164:0.488:2	0/1:67,54:32:122:0.446:2	0/1:56,43:31:99:0.434:2	0/1:55,32:31:87:0.368:2
chr22	24579157	rs200945728	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:98,24:30:122:0.197:2	0/1:58,9:29:67:0.134:2	0/1:10,6:32:16:0.375:2	./.	0/1:92,38:31:130:0.292:2	0/1:88,32:31:120:0.267:2	0/1:85,46:30:131:0.351:2	0/1:110,31:30:141:0.220:2	0/1:86,37:30:123:0.301:2	0/1:103,37:31:140:0.264:2	0/1:94,20:30:114:0.175:2
chr22	24579158	rs201628954	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:98,24:32:122:0.197:2	0/1:58,9:33:67:0.134:2	0/1:10,6:31:16:0.375:2	./.	0/1:90,38:32:128:0.297:2	0/1:87,32:32:119:0.269:2	0/1:84,46:33:130:0.354:2	0/1:110,31:32:141:0.220:2	0/1:83,37:33:120:0.308:2	0/1:103,37:32:140:0.264:2	0/1:91,20:33:112:0.180:2
chr22	24579219	rs399140	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:57,6:31:63:0.095:2	0/1:31,6:30:37:0.162:2	./.	./.	0/1:63,12:29:75:0.160:2	0/1:48,13:28:61:0.213:2	0/1:57,18:29:75:0.240:2	0/1:83,22:29:105:0.210:2	0/1:41,11:28:52:0.212:2	0/1:44,7:29:51:0.137:2	0/1:40,4:30:44:0.091:2
chr22	24580105	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,4:31:69:0.058:2	./.	./.	./.	./.	./.	./.	./.
chr22	24580807	rs78586898	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,39:33:79:0.494:2	./.
chr22	24581686	rs41304431	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:31:10:0.300:2	./.
chr22	24582080	rs143805165	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,47:30:69:0.681:2	./.	./.	./.	./.	0/1:17,28:30:45:0.622:2
chr22	24582314	rs140483621	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,86:32:180:0.478:2	./.	./.	./.	./.	./.
chr22	24621541	rs140980900	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:30:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	24622648	rs2275984	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:22,27:33:49:0.551:2	0/1:15,16:32:31:0.516:2	0/1:0,9:32:9:1.00:2	./.	./.	0/1:35,26:32:61:0.426:2	./.	0/1:5,99:33:104:0.952:2	./.	./.	./.
chr22	24628928	rs762276	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:25:9:0.333:2	0/1:0,5:30:5:1.00:2	./.	./.	./.	0/1:2,3:31:5:0.600:2	0/1:1,2:31:3:0.667:2	./.
chr22	24717510	rs56168869	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,22:31:43:0.512:2
chr22	24717518	rs3747113	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,25:32:26:0.962:2	0/1:1,17:30:18:0.944:2	./.	./.	0/1:26,18:30:44:0.409:2	0/1:24,21:31:46:0.467:2	./.	0/1:22,15:30:37:0.405:2	./.	./.	./.
chr22	24717850	rs204710	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:31:56:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,59:33:59:1.00:2	0/1:0,67:32:67:1.00:2
chr22	24734446	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,4:33:33:0.121:2	./.
chr22	24761467	rs204718	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:32:34:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,32:31:33:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,36:31:36:1.00:2	0/1:1,50:32:51:0.980:2	0/1:0,26:30:26:1.00:2	0/1:0,45:30:45:1.00:2
chr22	24761502	rs139166286	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,3:33:38:0.079:2	./.	./.	0/1:43,6:27:49:0.122:2	./.	./.	./.	./.
chr22	24837103	rs17650937	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,29:30:58:0.500:2	0/1:26,22:32:48:0.458:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	24837128	rs201666195	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:30:112:0.036:2	./.	./.	./.	./.	./.
chr22	24837301	rs5751876	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,28:29:28:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,5:29:5:1.00:2	./.	0/1:0,31:30:31:1.00:2	0/1:13,18:30:31:0.581:2	./.	0/1:0,21:29:21:1.00:2	0/1:24,8:31:32:0.250:2	0/1:0,24:30:24:1.00:2	0/1:12,16:31:28:0.571:2
chr22	24898310	rs2232866	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,102:33:104:0.981:2	0/1:0,61:32:61:1.00:2	0/1:4,7:33:11:0.636:2	./.	0/1:3,94:32:97:0.969:2	0/1:55,55:31:110:0.500:2	./.	0/1:1,107:32:108:0.991:2	0/1:81,62:33:143:0.434:2	0/1:1,91:32:92:0.989:2	0/1:57,70:32:127:0.551:2
chr22	24936970	rs9704	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,80:30:80:1.00:2	0/1:0,35:29:35:1.00:2	0/1:3,6:32:9:0.667:2	./.	0/1:0,53:30:53:1.00:2	0/1:0,89:29:89:1.00:2	0/1:34,45:30:79:0.570:2	0/1:60,61:30:121:0.504:2	0/1:0,108:31:108:1.00:2	0/1:0,100:31:100:1.00:2	0/1:1,103:30:104:0.990:2
chr22	24964128	rs4597	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,44:32:44:1.00:2	0/1:0,44:33:44:1.00:2	0/1:4,3:32:7:0.429:2	./.	0/1:1,38:32:39:0.974:2	0/1:1,49:33:50:0.980:2	0/1:25,14:30:39:0.359:2	0/1:26,36:32:62:0.581:2	0/1:0,61:33:61:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,71:32:71:1.00:2
chr22	24981938	rs41277315	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,13:31:17:0.765:2	0/1:3,6:33:9:0.667:2	./.	./.
chr22	25003934	rs2076999	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:31:6:0.500:2	0/1:0,33:30:33:1.00:2	0/1:18,13:30:31:0.419:2	0/1:32,22:31:54:0.407:2	0/1:26,14:29:40:0.350:2	0/1:29,27:30:56:0.482:2	./.	0/1:23,10:31:33:0.303:2	0/1:29,32:29:61:0.525:2
chr22	25005953	rs149660004	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,9:32:193:0.047:2	./.	./.
chr22	25005973	rs374899466	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,45:33:179:0.253:2	./.
chr22	25007132	rs4049897	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:29:194:0.026:2	0/1:190,6:27:196:0.031:2	./.	./.	./.	./.
chr22	25016311	rs183458338	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,28:32:47:0.596:2	0/1:23,12:32:35:0.343:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	25016442	rs3895576	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:182,8:30:192:0.042:2	./.	./.	./.	0/1:180,6:30:187:0.032:2	0/1:186,6:30:193:0.031:2	0/1:184,7:28:192:0.037:2	./.	./.	./.	0/1:171,5:27:176:0.028:2
chr22	25016461	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,5:32:153:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	25016462	rs201564868	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:32:183:0.022:2	./.	./.	./.	./.	./.
chr22	25016911	rs199703506	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:169,12:34:181:0.066:2	0/1:90,6:32:96:0.063:2	./.	0/1:175,13:31:188:0.069:2	0/1:168,10:32:178:0.056:2	0/1:178,8:30:186:0.043:2	0/1:175,5:32:180:0.028:2	0/1:178,7:33:186:0.038:2	./.	./.	0/1:168,6:32:175:0.034:2
chr22	25017036	rs56214106	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,87:32:163:0.534:2	0/1:90,87:32:177:0.492:2	./.	0/1:148,4:33:153:0.026:2
chr22	25019155	rs4049829	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:21,4:28:25:0.160:2	0/1:2,63:27:65:0.969:2	0/1:151,42:25:193:0.218:2	0/1:117,27:25:144:0.188:2	0/1:146,43:26:189:0.228:2	0/1:120,35:27:155:0.226:2	./.	0/1:101,22:26:123:0.179:2	0/1:94,34:25:128:0.266:2
chr22	25019803	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,6:31:183:0.033:2	./.	./.	./.	./.	./.
chr22	25019836	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,7:30:188:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	25019873	rs201278692	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,12:31:162:0.074:2	./.	./.
chr22	25023849	rs200019915	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,8:31:192:0.042:2	./.	./.	./.
chr22	25023876	rs1041987	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:141,4:32:145:0.028:2	./.	./.	./.	./.	./.	./.
chr22	25023893	rs201313233	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:145,29:29:174:0.167:2	0/1:94,10:31:104:0.096:2	0/1:23,7:30:30:0.233:2	./.	./.	./.	0/1:153,17:31:170:0.100:2	0/1:168,11:29:180:0.061:2	./.	./.	0/1:145,22:31:167:0.132:2
chr22	25023903	rs1041998	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:131,7:29:138:0.051:2	./.	./.	0/1:152,11:28:164:0.067:2	./.	./.	./.
chr22	25023914	rs16986465	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,12:27:145:0.083:2	./.	./.	./.
chr22	25023915	rs1042004	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:121,23:29:157:0.160:2	0/1:84,8:28:94:0.087:2	0/1:21,4:30:25:0.160:2	./.	./.	./.	0/1:129,12:27:149:0.085:2	0/1:127,7:27:142:0.052:2	./.	./.	0/1:94,13:27:127:0.121:2
chr22	25024275	rs200989095	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,5:32:83:0.060:2	./.	./.
chr22	25024707	rs202071294	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:31:126:0.032:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	25024713	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:32:136:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	25119210	rs56199175	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,9:28:15:0.600:2	./.
chr22	25121409	rs142971267	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,10:29:28:0.357:2	./.	./.	./.
chr22	25124155	rs148034582	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,58:30:117:0.496:2	./.	./.	./.	0/1:59,57:31:116:0.491:2	./.
chr22	25144912	rs11703684	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,31:32:58:0.534:2	0/1:22,23:31:45:0.511:2	./.	./.	./.
chr22	25145453	rs1892723	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,46:32:93:0.495:2	0/1:24,31:31:55:0.564:2	0/1:0,9:31:9:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,44:30:44:1.00:2	0/1:0,71:30:71:1.00:2	0/1:28,16:30:44:0.364:2	0/1:0,78:30:78:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,90:31:90:1.00:2
chr22	25145471	rs1892722	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:30:8:1.00:2	./.	./.	0/1:20,18:29:38:0.474:2	0/1:19,8:31:27:0.296:2	0/1:27,22:29:49:0.449:2	0/1:24,10:30:34:0.294:2	0/1:16,29:30:45:0.644:2	0/1:27,45:31:72:0.625:2
chr22	25145753	rs1475853	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,65:31:124:0.524:2	0/1:67,54:31:121:0.446:2	./.	./.	./.	./.	./.	./.
chr22	25263048	rs56022312	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:25,20:32:45:0.444:2	0/1:10,9:32:19:0.474:2	./.	0/1:17,16:31:33:0.485:2	./.	./.	./.	0/1:34,20:31:54:0.370:2	0/1:17,17:33:34:0.500:2	./.	./.
chr22	25264478	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,5:21:22:0.227:2	./.	./.	./.	./.
chr22	25270455	rs9624633	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:32:9:0.444:2	./.	./.	0/1:55,46:32:101:0.455:2	./.	./.	./.	./.	./.
chr22	25293991	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:117,4:34:121:0.033:2	./.	./.	./.	./.	./.	./.	./.
chr22	25294369	rs2073201	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,32:33:80:0.400:2	./.	./.	./.	./.	./.	./.	./.
chr22	25294376	rs2073202	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,30:32:71:0.423:2	./.	./.	./.	./.	./.	./.	./.
chr22	25424211	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:30:11:0.364:2	./.	./.
chr22	25424579	rs117847071	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,12:30:31:0.387:2	0/1:14,5:31:19:0.263:2	./.	./.	0/1:23,9:30:32:0.281:2	./.	./.
chr22	25425244	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,6:26:13:0.462:2	0/1:8,7:29:15:0.467:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	25425282	rs116253946	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,11:30:39:0.282:2	0/1:0,53:31:53:1.00:2	./.	0/1:27,22:31:49:0.449:2	0/1:28,16:33:44:0.364:2	./.	0/1:16,16:31:32:0.500:2	./.
chr22	25425340	rs114925996	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:12,8:32:20:0.400:2	0/1:9,8:32:18:0.471:2	./.	0/1:37,18:32:55:0.327:2	0/1:33,14:29:47:0.298:2	./.	./.	0/1:36,13:30:49:0.265:2	./.	0/1:0,29:30:29:1.00:2	./.
chr22	25425403	rs115525122	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:15,10:32:25:0.400:2	0/1:10,4:32:14:0.286:2	./.	0/1:20,11:32:31:0.355:2	0/1:32,14:31:46:0.304:2	./.	./.	0/1:31,9:32:40:0.225:2	./.	./.	./.
chr22	25425439	rs114054494	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,9:30:23:0.391:2	0/1:8,3:27:11:0.273:2	0/1:2,4:24:6:0.667:2	0/1:13,5:26:18:0.278:2	0/1:34,10:27:44:0.227:2	./.	./.	0/1:24,10:30:34:0.294:2	./.	0/1:0,21:29:21:1.00:2	./.
chr22	25435028	rs114021782	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,14:32:15:0.933:2	./.	./.
chr22	25435047	rs201736069	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,5:32:13:0.385:2	./.	./.
chr22	25435550	rs199774435	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:55,29:31:84:0.345:2	./.	./.	./.	./.	./.	./.
chr22	25435959	rs115232052	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,6:30:18:0.333:2	./.	./.	./.	./.	./.	0/1:6,14:30:20:0.700:2	./.
chr22	25437357	rs115878480	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,11:31:25:0.440:2	./.	./.	./.	./.	./.	0/1:0,7:33:7:1.00:2	./.
chr22	25466323	rs6519550	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:28,24:30:52:0.462:2	0/1:20,17:30:37:0.459:2	./.	./.	./.	./.	./.	0/1:63,50:31:113:0.442:2	./.	./.	./.
chr22	25466395	rs6004422	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:21,24:30:45:0.533:2	0/1:13,14:29:27:0.519:2	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	0/1:36,49:31:85:0.576:2	./.	./.	./.
chr22	25570273	rs5760891	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:29:11:0.545:2	./.	./.	./.	./.	./.	./.	0/1:34,23:30:57:0.404:2	./.
chr22	25573431	rs12168578	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,79:31:161:0.491:2	./.	0/1:42,47:31:89:0.528:2	./.
chr22	25577688	rs763279	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,56:32:56:1.00:2	0/1:0,34:32:34:1.00:2	./.	0/1:52,38:32:90:0.422:2	0/1:54,31:32:85:0.365:2	0/1:0,95:32:95:1.00:2	0/1:1,89:32:90:0.989:2	./.	0/1:46,34:33:80:0.425:2	./.	0/1:66,68:32:134:0.507:2
chr22	25577733	rs9612887	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,60:30:60:1.00:2	0/1:0,29:28:29:1.00:2	./.	0/1:39,35:29:74:0.473:2	0/1:54,27:29:81:0.333:2	0/1:0,74:30:74:1.00:2	0/1:0,72:29:72:1.00:2	./.	0/1:27,33:30:60:0.550:2	0/1:48,38:30:87:0.442:2	0/1:58,48:29:106:0.453:2
chr22	25580968	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr22	25586662	rs17607104	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,45:32:109:0.413:2	./.
chr22	25586744	rs2330986	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,23:31:51:0.451:2	./.	./.	./.	0/1:26,9:31:35:0.257:2	./.	./.	0/1:26,25:32:51:0.490:2
chr22	25599849	rs17670506	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,60:33:127:0.472:2	./.
chr22	25601196	rs9608378	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:43,33:32:76:0.434:2	0/1:16,20:32:36:0.556:2	0/1:4,19:32:23:0.826:2	0/1:1,98:32:99:0.990:2	0/1:71,80:32:151:0.530:2	0/1:54,59:33:113:0.522:2	0/1:0,145:33:145:1.00:2	0/1:72,53:33:125:0.424:2	./.	0/1:0,61:33:61:1.00:2	0/1:0,86:33:86:1.00:2
chr22	25627604	rs8140949	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,83:31:84:0.988:2	0/1:0,39:31:39:1.00:2	./.	0/1:64,69:31:133:0.519:2	0/1:167,5:30:172:0.029:2	0/1:63,71:31:134:0.530:2	0/1:2,129:31:131:0.985:2	./.	./.	./.	./.
chr22	25714045	rs61730269	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:31:68:0.059:2	./.	./.	./.	./.	./.
chr22	25714110	rs2064141	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,18:31:49:0.367:2	0/1:14,19:31:33:0.576:2	0/1:4,4:32:8:0.500:2	0/1:0,63:32:63:1.00:2	./.	0/1:42,37:33:79:0.468:2	./.	0/1:49,53:32:102:0.520:2	./.	0/1:0,49:33:49:1.00:2	./.
chr22	25714113	rs2330574	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,18:32:49:0.367:2	0/1:14,19:32:33:0.576:2	0/1:4,4:33:8:0.500:2	0/1:0,63:32:63:1.00:2	./.	0/1:47,37:33:84:0.440:2	./.	0/1:49,54:32:103:0.524:2	./.	0/1:0,49:33:49:1.00:2	./.
chr22	25714218	rs2072869	A	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,23:30:42:0.548:2	0/1:7,18:31:25:0.720:2	./.	0/1:22,32:32:54:0.593:2	0/1:35,22:30:57:0.386:2	0/1:21,26:30:47:0.553:2	0/1:26,25:30:51:0.490:2	0/1:30,24:30:54:0.444:2	0/1:19,18:32:37:0.486:2	0/1:25,17:31:42:0.405:2	0/1:1,37:32:38:0.974:2
chr22	25714261	rs61730270	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,4:34:36:0.111:2	./.	./.
chr22	25714306	rs138370830	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,11:30:41:0.268:2	./.	./.	./.	./.	./.
chr22	25714320	rs138265416	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,3:31:40:0.075:2	./.	./.	./.	./.	./.	./.
chr22	25714335	rs7292176	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,3:32:40:0.075:2	./.	./.	./.	./.	./.	./.
chr22	25715756	rs72500244	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,55:32:131:0.420:2	./.	./.	./.	./.
chr22	25715886	rs138922401	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:153,13:32:166:0.078:2	./.	./.	./.	./.	./.	./.	./.
chr22	25715896	rs145766467	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:144,15:32:159:0.094:2	./.	./.	./.	./.	0/1:115,5:32:120:0.042:2	./.	./.
chr22	25750578	rs117368158	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,66:31:159:0.415:2	./.	./.	./.	./.
chr22	25753231	rs133194	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,21:30:56:0.375:2	0/1:27,8:31:35:0.229:2	./.	0/1:37,26:29:63:0.413:2	0/1:45,26:30:71:0.366:2	0/1:37,28:28:65:0.431:2	0/1:2,47:30:49:0.959:2	0/1:28,42:30:70:0.600:2	0/1:25,32:31:57:0.561:2	0/1:19,25:30:44:0.568:2	0/1:0,40:30:40:1.00:2
chr22	25755878	rs17616994	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:99,86:31:185:0.465:2	./.	./.	./.	./.	./.	./.
chr22	25755895	rs151010331	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,93:30:192:0.487:2	./.	./.
chr22	26157068	rs61734946	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,76:32:157:0.484:2	./.	./.	0/1:69,61:33:130:0.469:2	0/1:52,37:34:90:0.416:2	./.	./.
chr22	26159289	rs133885	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,31:32:31:1.00:2	0/1:0,16:32:16:1.00:2	./.	./.	0/1:13,11:32:24:0.458:2	./.	0/1:15,20:31:35:0.571:2	0/1:15,17:31:32:0.531:2	0/1:14,10:31:24:0.417:2	./.	0/1:27,13:32:40:0.325:2
chr22	26164413	rs13058434	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,9:30:21:0.429:2	0/1:7,11:31:18:0.611:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	26164426	rs200651180	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,10:9:20:0.500:2
chr22	26166900	rs3859866	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:33:68:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,144:33:144:1.00:2	0/1:0,159:33:159:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,180:33:181:1.00:2	0/1:1,144:33:145:0.993:2	0/1:0,117:33:117:1.00:2	0/1:0,98:33:98:1.00:2	0/1:0,85:33:85:1.00:2
chr22	26173661	rs5761170	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:28:63:1.00:2	0/1:0,57:30:57:1.00:2	0/1:9,3:31:12:0.250:2	0/1:0,109:31:109:1.00:2	0/1:0,95:30:95:1.00:2	0/1:3,72:29:75:0.960:2	0/1:0,90:30:90:1.00:2	0/1:0,83:31:85:1.00:2	0/1:0,87:31:87:1.00:2	0/1:1,68:29:69:0.986:2	0/1:0,54:30:54:1.00:2
chr22	26193982	rs738642	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,53:33:53:1.00:2	0/1:0,39:32:39:1.00:2	./.	0/1:1,59:33:60:0.983:2	./.	./.	0/1:32,26:33:58:0.448:2	0/1:0,70:32:70:1.00:2	0/1:0,57:34:57:1.00:2	0/1:19,34:33:53:0.642:2	0/1:29,24:33:53:0.453:2
chr22	26194045	rs738643	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:21,25:29:46:0.543:2	0/1:27,14:28:42:0.341:2	./.	0/1:3,43:29:46:0.935:2	./.	./.	0/1:31,12:30:43:0.279:2	0/1:2,41:28:43:0.953:2	0/1:0,53:30:53:1.00:2	0/1:19,19:29:38:0.500:2	0/1:25,18:29:43:0.419:2
chr22	26219605	rs4820658	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,81:29:83:0.976:2	0/1:65,59:28:125:0.476:2	./.	./.	0/1:4,137:30:142:0.972:2	0/1:54,61:30:116:0.530:2	./.	./.
chr22	26222454	rs9624909	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:30:13:0.385:2	./.	0/1:44,30:29:74:0.405:2	0/1:51,34:29:85:0.400:2	0/1:67,45:29:112:0.402:2	./.	0/1:70,53:31:123:0.431:2	0/1:41,47:30:88:0.534:2	0/1:77,47:30:124:0.379:2
chr22	26231312	rs17704912	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:26,39:30:65:0.600:2	0/1:16,17:31:33:0.515:2	./.	./.	./.	./.	./.	./.	./.	0/1:48,40:31:88:0.455:2	./.
chr22	26239850	rs5761268	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,20:32:20:1.00:2	0/1:0,16:30:16:1.00:2	./.	0/1:0,15:31:15:1.00:2	./.	./.	0/1:17,14:31:31:0.452:2	0/1:24,10:29:34:0.294:2	./.	0/1:9,6:31:15:0.400:2	0/1:19,18:32:37:0.486:2
chr22	26242225	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,20:33:42:0.476:2	0/1:6,8:32:14:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	26242229	rs2859407	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,21:30:45:0.467:2	./.	./.	./.	./.	./.
chr22	26247456	rs5996988	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,51:31:51:1.00:2	0/1:30,22:31:52:0.423:2	./.	0/1:0,54:31:54:1.00:2	0/1:0,49:31:49:1.00:2	./.	0/1:25,26:30:51:0.510:2	./.
chr22	26272244	rs35578357	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,79:30:178:0.444:2	./.	./.	./.	./.
chr22	26286738	rs33928909	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,53:31:123:0.431:2	./.	./.	./.	./.	./.
chr22	26388337	rs916425	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,16:31:39:0.410:2	0/1:48,42:31:90:0.467:2	./.	./.	0/1:30,22:32:52:0.423:2	0/1:27,16:32:43:0.372:2	./.	0/1:16,24:32:40:0.600:2
chr22	26388398	rs147898739	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,18:31:39:0.462:2	0/1:12,13:32:25:0.520:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	26422656	rs192136611	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,13:30:35:0.371:2	./.	./.	./.	./.
chr22	26422980	rs2236005	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:13,4:27:17:0.235:2	0/1:6,8:28:14:0.571:2	./.	./.	0/1:1,12:26:13:0.923:2	./.	./.	./.	./.	0/1:9,8:28:17:0.471:2	./.
chr22	26423124	rs6004901	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,40:32:41:0.976:2	./.	./.	./.	./.	./.	./.
chr22	26423477	rs7284177	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,55:31:56:0.982:2	./.	./.	./.	./.	./.	./.
chr22	26423584	rs34167609	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,26:28:69:0.377:2	./.	./.	./.	./.
chr22	26688388	rs35377445	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,18:31:39:0.462:2	./.	0/1:11,21:31:32:0.656:2	./.	./.	./.	./.	0/1:16,16:30:32:0.500:2
chr22	26688838	rs17304075	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:16,15:30:31:0.484:2	0/1:11,14:32:25:0.560:2	./.	./.	./.	./.	0/1:31,24:29:55:0.436:2	0/1:29,47:30:76:0.618:2	./.	0/1:29,13:32:42:0.310:2	./.
chr22	26689105	rs17395296	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	0/1:3,7:30:10:0.700:2	0/1:0,2:32:2:1.00:2	./.	./.	./.
chr22	26694994	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:30:83:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	26695077	rs663048	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,3:31:12:0.250:2	0/1:33,35:31:68:0.515:2	0/1:1,117:29:118:0.992:2	./.	./.	./.	./.	./.	./.
chr22	26702015	rs1210894	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,29:31:49:0.592:2	0/1:24,11:32:35:0.314:2	0/1:3,5:33:8:0.625:2	0/1:0,80:33:80:1.00:2	0/1:0,70:32:70:1.00:2	0/1:39,31:32:70:0.443:2	./.	0/1:43,42:32:85:0.494:2	./.	./.	0/1:29,23:32:52:0.442:2
chr22	26706703	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:31:107:0.037:2
chr22	26743875	rs141923405	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,41:32:98:0.418:2	./.	./.	./.	./.
chr22	26761462	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:32:95:0.043:2	./.	./.	./.	./.	./.
chr22	26829914	rs3747128	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,26:28:69:0.377:2	./.	0/1:22,19:28:41:0.463:2	0/1:12,11:30:23:0.478:2
chr22	26830285	rs34902186	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,66:32:119:0.555:2	./.	./.	./.	./.	0/1:54,49:33:103:0.476:2	0/1:40,39:32:79:0.494:2	./.
chr22	26830316	rs11705277	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,67:30:146:0.459:2	./.	0/1:56,58:31:114:0.509:2	0/1:79,85:32:164:0.518:2
chr22	26830328	rs144492202	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,9:30:18:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	26830366	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:31:112:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	26853905	rs1894704	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,22:31:22:1.00:2	0/1:0,15:32:15:1.00:2	./.	0/1:0,30:31:30:1.00:2	0/1:0,33:29:33:1.00:2	0/1:1,47:31:48:0.979:2	0/1:14,26:31:40:0.650:2	0/1:0,45:31:45:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,26:31:26:1.00:2
chr22	26854441	rs1894706	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,99:31:100:0.990:2	0/1:0,71:31:71:1.00:2	0/1:11,17:30:28:0.607:2	0/1:0,151:30:151:1.00:2	0/1:1,139:30:140:0.993:2	0/1:0,138:30:138:1.00:2	0/1:112,84:30:196:0.429:2	0/1:1,173:30:174:0.994:2	0/1:0,148:31:148:1.00:2	0/1:0,135:31:135:1.00:2	0/1:0,123:30:123:1.00:2
chr22	26859942	rs5752330	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:30:51:1.00:2	0/1:0,39:31:39:1.00:2	0/1:9,3:31:12:0.250:2	0/1:0,112:30:112:1.00:2	0/1:2,115:30:117:0.983:2	0/1:2,98:30:100:0.980:2	0/1:72,75:31:147:0.510:2	0/1:3,118:30:121:0.975:2	0/1:0,96:32:96:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,60:31:60:1.00:2
chr22	26860269	rs2014410	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:24,26:30:50:0.520:2	0/1:18,8:32:26:0.308:2	./.	0/1:30,27:32:57:0.474:2	./.	./.	0/1:29,32:31:61:0.525:2	./.	0/1:17,13:30:30:0.433:2	0/1:0,35:32:35:1.00:2	0/1:30,33:31:63:0.524:2
chr22	26860410	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:32:88:0.045:2	./.	./.	./.	./.
chr22	26860621	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:32:147:0.027:2	./.	./.	./.
chr22	26861473	rs34962745	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,30:31:51:0.588:2	./.	./.	./.	./.	./.	./.	./.
chr22	26862212	rs713998	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,37:31:37:1.00:2	0/1:0,21:31:21:1.00:2	0/1:3,3:32:6:0.500:2	0/1:0,51:33:51:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,44:31:44:1.00:2	0/1:22,31:32:53:0.585:2	0/1:0,57:32:57:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,54:32:54:1.00:2
chr22	26868276	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:33:74:0.054:2	./.
chr22	26884039	rs4820682	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,21:30:22:1.00:2	0/1:0,10:32:10:1.00:2	./.	0/1:0,24:31:24:1.00:2	0/1:0,19:29:19:1.00:2	0/1:0,14:31:14:1.00:2	0/1:11,11:31:22:0.500:2	0/1:0,27:30:27:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,26:31:26:1.00:2
chr22	26884372	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:32:175:0.023:2	./.
chr22	26888297	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:33:188:0.021:2	./.	./.	./.	./.	./.
chr22	26894879	rs17402286	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,23:32:45:0.511:2	0/1:15,11:33:26:0.423:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	26895337	rs1008530	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,51:31:52:0.981:2	0/1:0,27:31:27:1.00:2	./.	0/1:0,73:31:73:1.00:2	0/1:1,73:31:74:0.986:2	0/1:0,64:31:64:1.00:2	0/1:64,41:32:105:0.390:2	0/1:0,81:31:81:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,56:31:56:1.00:2
chr22	26898030	rs201845117	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,4:32:127:0.031:2	./.	./.	./.	./.	./.
chr22	26932150	rs3752523	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,40:32:77:0.519:2	0/1:23,21:33:44:0.477:2	0/1:4,8:32:12:0.667:2	0/1:0,95:32:95:1.00:2	0/1:48,35:31:83:0.422:2	./.	./.	0/1:3,110:32:113:0.973:2	0/1:51,65:33:116:0.560:2	0/1:47,38:32:85:0.447:2	0/1:1,106:32:107:0.991:2
chr22	26936766	rs58274935	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,21:31:38:0.553:2	./.	./.	./.	./.	./.
chr22	26936897	rs12169509	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,56:32:157:0.357:2	./.	0/1:44,46:31:90:0.511:2	./.
chr22	26937087	rs5761587	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,20:32:40:0.500:2	0/1:21,9:32:30:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,26:31:53:0.491:2
chr22	26937321	rs17851532	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,10:32:21:0.476:2	./.	./.	./.
chr22	26937327	rs4822735	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,7:27:7:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,2:34:2:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,12:28:12:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,28:31:28:1.00:2	0/1:5,4:30:9:0.444:2	0/1:3,2:34:5:0.400:2	0/1:0,6:28:6:1.00:2
chr22	26937410	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:32:97:0.041:2	./.	./.	./.
chr22	27008126	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:32:57:0.070:2	./.	./.
chr22	27019197	rs142090709	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,13:31:20:0.650:2	0/1:2,4:30:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	27021457	rs5761637	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,10:31:10:1.00:2	0/1:0,15:29:15:1.00:2	./.	0/1:0,30:31:30:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,34:30:34:1.00:2	0/1:27,11:30:38:0.289:2	0/1:0,34:31:34:1.00:2	./.	0/1:2,8:27:10:0.800:2	0/1:0,24:29:24:1.00:2
chr22	28194930	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:30:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	28196072	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.
chr22	28315189	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,15:9:56:0.268:2	./.	./.	./.	./.	./.	./.
chr22	28378450	rs61744744	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:31:102:0.039:2	./.	./.	./.	./.
chr22	28378472	rs5762430	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:38,36:32:74:0.486:2	0/1:15,28:32:43:0.651:2	./.	./.	0/1:60,45:32:105:0.429:2	./.	0/1:97,5:33:102:0.049:2	./.	./.	0/1:34,33:33:67:0.493:2	0/1:57,41:32:98:0.418:2
chr22	28378688	rs9613558	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,33:32:85:0.388:2	0/1:36,24:32:60:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	28378810	rs202068761	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,13:11:70:0.186:2	./.	./.	./.	./.
chr22	28378998	rs17482652	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,55:31:92:0.598:2	./.
chr22	28389453	rs470101	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,58:30:137:0.423:2	0/1:44,43:30:87:0.494:2	./.	0/1:86,39:29:125:0.312:2	0/1:58,46:31:104:0.442:2	0/1:32,33:30:65:0.508:2	./.
chr22	28394685	rs187345071	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,25:30:43:0.581:2	./.
chr22	28394985	rs75173815	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,25:33:62:0.403:2	./.
chr22	28397390	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,4:30:44:0.091:2	./.	./.	./.
chr22	28424993	rs9625387	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,49:32:118:0.415:2	0/1:68,43:32:111:0.387:2	./.	0/1:64,54:32:118:0.458:2	0/1:52,33:33:85:0.388:2	./.	./.
chr22	28426321	rs17483998	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,52:33:111:0.468:2	./.
chr22	28503834	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:33:174:0.023:2	./.
chr22	28504074	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:30:100:0.040:2
chr22	28504183	rs9625408	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,60:31:124:0.484:2	0/1:46,60:31:106:0.566:2	./.	0/1:74,47:31:121:0.388:2	0/1:41,34:30:75:0.453:2	./.	./.
chr22	28504258	rs9625409	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,53:29:109:0.486:2	0/1:60,52:30:112:0.464:2	./.	0/1:70,44:29:114:0.386:2	0/1:49,48:30:97:0.495:2	./.	./.
chr22	28559120	rs17486417	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,32:33:47:0.681:2
chr22	29091157	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,6:32:199:0.030:2	0/1:192,4:34:196:0.020:2	./.	./.
chr22	29091200	rs373864492	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:32:166:0.024:2	./.
chr22	29091840	rs142470496	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:78,4:32:82:0.049:2	./.	./.	0/1:70,7:32:77:0.091:2	./.	./.	./.	./.	./.	./.	./.
chr22	29091841	rs146546850	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:78,4:31:82:0.049:2	./.	./.	0/1:69,7:32:76:0.092:2	./.	./.	./.	./.	./.	./.	./.
chr22	29139876	rs201398209	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,9:34:27:0.333:2
chr22	29147293	rs73881132	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,34:30:73:0.466:2	./.	0/1:33,24:30:57:0.421:2	./.	./.	./.
chr22	29182169	rs77099742	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,52:31:123:0.423:2	./.	./.
chr22	29196306	rs2228260	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,7:32:15:0.467:2	./.	./.	./.	./.	./.	./.
chr22	29440848	rs149582571	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,64:30:153:0.418:2	./.	./.	./.
chr22	29445468	rs34671303	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,7:31:10:0.700:2	./.	./.	./.	./.	./.	./.	./.
chr22	29446611	rs5997435	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:15,12:33:27:0.444:2	0/1:5,5:33:10:0.500:2	./.	0/1:14,11:32:25:0.440:2	./.	0/1:0,23:32:23:1.00:2	0/1:4,4:24:8:0.500:2	0/1:20,17:32:37:0.459:2	./.	./.	./.
chr22	29446685	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,23:31:68:0.338:2	./.	./.	./.	./.	./.	./.
chr22	29454840	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:30:66:0.061:2	./.	./.	./.	./.	./.
chr22	29456671	rs35968360	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,22:29:47:0.468:2	./.	./.	./.	./.	./.	./.
chr22	29456699	rs9625679	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,40:29:73:0.548:2
chr22	29456733	rs6005977	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:30:80:1.00:2	0/1:0,39:30:39:1.00:2	0/1:9,4:29:13:0.308:2	0/1:1,81:30:82:0.988:2	0/1:45,29:31:74:0.392:2	0/1:0,77:31:77:1.00:2	0/1:52,43:31:95:0.453:2	./.	0/1:54,64:30:118:0.542:2	0/1:27,38:31:65:0.585:2	0/1:0,85:30:85:1.00:2
chr22	29456797	rs41281611	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,56:33:105:0.533:2	./.	./.
chr22	29533499	rs35612970	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,18:32:36:0.500:2	0/1:27,14:31:42:0.341:2	./.	./.	./.	./.	./.	0/1:1,42:32:43:0.977:2
chr22	29533572	rs34920087	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,19:31:39:0.487:2	0/1:24,11:31:35:0.314:2	./.	./.	./.	./.	./.	0/1:0,35:32:35:1.00:2
chr22	29621128	rs743920	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,53:32:122:0.434:2	./.	./.	0/1:39,37:32:76:0.487:2	./.	./.	./.
chr22	29628260	rs76367973	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,19:31:32:0.594:2
chr22	29630337	rs3950176	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,27:33:51:0.529:2	0/1:13,19:31:32:0.594:2	./.	./.	./.	0/1:50,41:32:91:0.451:2	./.	./.	./.	./.	./.
chr22	29656389	rs2231398	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,21:32:42:0.500:2	0/1:10,17:31:27:0.630:2	0/1:5,7:31:12:0.583:2	0/1:0,73:30:73:1.00:2	./.	0/1:38,20:31:58:0.345:2	0/1:45,36:31:81:0.444:2	0/1:34,56:31:90:0.622:2	./.	0/1:0,53:31:53:1.00:2	0/1:33,27:31:60:0.450:2
chr22	29659960	rs879580	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,11:31:18:0.611:2	./.	0/1:9,6:31:15:0.400:2	./.	0/1:5,7:31:12:0.583:2
chr22	29661524	rs201396784	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:40,7:22:47:0.149:2	./.	./.	0/1:61,10:18:71:0.141:2	./.	0/1:68,14:15:82:0.171:2	./.	./.	./.	./.	./.
chr22	29682930	rs146607451	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,3:32:39:0.077:2	./.	./.	./.	./.	./.	./.	./.
chr22	29693915	rs41311143	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	29704125	rs11090564	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:2,3:29:5:0.600:2	./.	./.	0/1:0,15:29:15:1.00:2	./.	0/1:6,9:29:15:0.600:2	0/1:0,6:28:6:1.00:2	./.	0/1:5,7:25:12:0.583:2	0/1:7,6:28:13:0.462:2	0/1:2,6:20:8:0.750:2
chr22	29704662	rs56037813	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:30:7:0.429:2	./.	./.
chr22	29707955	rs9613860	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,19:30:27:0.704:2	./.	./.	./.	./.	./.	./.
chr22	29727475	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:32:108:0.037:2	./.	./.	./.	./.
chr22	29727866	rs174765	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:19,14:32:33:0.424:2	0/1:11,14:29:25:0.560:2	0/1:0,3:31:3:1.00:2	./.	0/1:30,19:30:49:0.388:2	0/1:40,32:29:72:0.444:2	./.	0/1:0,56:30:56:1.00:2	0/1:23,22:31:45:0.489:2	0/1:28,17:31:45:0.378:2	0/1:18,23:30:41:0.561:2
chr22	29727886	rs2857465	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,22:27:22:1.00:2	0/1:0,16:26:16:1.00:2	0/1:0,3:27:3:1.00:2	0/1:0,37:26:37:1.00:2	0/1:0,26:26:26:1.00:2	0/1:0,48:27:48:1.00:2	0/1:0,20:26:20:1.00:2	0/1:0,30:26:30:1.00:2	0/1:0,27:28:27:1.00:2	0/1:0,33:26:33:1.00:2	0/1:0,24:26:24:1.00:2
chr22	29754871	.	G	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,6:21:95:0.063:2	0/1:112,8:22:120:0.067:2	./.	./.	0/1:70,6:23:76:0.079:2	0/1:79,5:31:84:0.060:2
chr22	29755888	rs2072051	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:61,51:33:112:0.455:2	0/1:31,38:33:69:0.551:2	0/1:0,19:34:19:1.00:2	./.	0/1:79,60:32:139:0.432:2	0/1:68,60:32:128:0.469:2	0/1:189,4:32:193:0.021:2	0/1:0,153:32:153:1.00:2	0/1:54,42:32:96:0.438:2	0/1:84,35:33:119:0.294:2	0/1:57,46:33:103:0.447:2
chr22	29759007	rs377318782	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,6:33:193:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	29763188	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,7:33:199:0.035:2	./.	./.	./.
chr22	29835060	rs16987627	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,60:29:128:0.469:2	0/1:29,42:29:71:0.592:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	29837537	rs3804076	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:98,89:29:187:0.476:2	0/1:56,36:30:92:0.391:2	0/1:0,23:30:23:1.00:2	0/1:10,171:30:181:0.945:2	0/1:90,67:29:157:0.427:2	0/1:101,92:30:193:0.477:2	0/1:5,167:29:172:0.971:2	./.	0/1:103,92:30:195:0.472:2	0/1:98,93:30:191:0.487:2	0/1:111,79:29:190:0.416:2
chr22	29837827	.	A	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:171,9:33:180:0.050:2	0/1:94,5:33:99:0.051:2	./.	./.	0/1:174,13:30:187:0.070:2	0/1:179,12:30:191:0.063:2	0/1:176,18:33:194:0.093:2	0/1:169,20:32:189:0.106:2	0/1:167,20:33:187:0.107:2	0/1:188,5:32:193:0.026:2	0/1:184,8:31:192:0.042:2
chr22	29837847	rs61734564	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:163,17:31:180:0.094:2	0/1:109,11:31:120:0.092:2	./.	0/1:187,8:32:195:0.041:2	0/1:175,19:30:194:0.098:2	0/1:154,43:30:197:0.218:2	0/1:148,45:31:193:0.233:2	0/1:157,34:30:192:0.178:2	0/1:149,44:31:193:0.228:2	0/1:174,17:32:191:0.089:2	0/1:175,13:30:188:0.069:2
chr22	29837884	rs12484086	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,59:31:185:0.321:2	0/1:116,47:31:163:0.288:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	29837973	rs61731583	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:102,7:26:109:0.064:2	./.	0/1:136,7:23:143:0.049:2	./.	0/1:134,13:24:147:0.088:2	0/1:122,8:24:130:0.062:2	0/1:112,8:26:120:0.067:2	0/1:142,9:25:151:0.060:2	0/1:121,6:27:127:0.047:2	./.
chr22	29837976	.	C	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:100,6:31:106:0.057:2	./.	0/1:137,7:29:144:0.049:2	./.	0/1:135,12:29:147:0.082:2	0/1:120,7:29:127:0.055:2	0/1:111,8:30:119:0.067:2	0/1:138,9:29:147:0.061:2	0/1:119,6:32:125:0.048:2	./.
chr22	29881828	rs165734	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,47:32:90:0.522:2	./.	./.	./.	0/1:32,40:33:72:0.556:2	./.	./.
chr22	29885016	rs59371099	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,31:32:68:0.456:2	0/1:43,29:32:72:0.403:2	./.
chr22	29885473	rs5763269	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,16:32:31:0.516:2	0/1:12,12:31:24:0.500:2	0/1:1,4:32:5:0.800:2	0/1:0,31:32:31:1.00:2	./.	0/1:11,14:32:25:0.560:2	./.	0/1:20,19:31:39:0.487:2	./.	./.	./.
chr22	29885594	rs79235463	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:51,7:30:58:0.121:2	0/1:19,5:31:24:0.208:2	./.	./.	0/1:39,7:32:46:0.152:2	0/1:44,3:34:47:0.064:2	0/1:37,6:33:43:0.140:2	0/1:60,6:31:66:0.091:2	./.	0/1:35,13:33:48:0.271:2	0/1:39,16:33:55:0.291:2
chr22	29885618	rs367989424	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:58,7:34:65:0.108:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,11:33:61:0.180:2	0/1:67,13:32:80:0.163:2
chr22	29885686	rs200302220	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:123,5:28:128:0.039:2	./.	./.	./.	./.	./.	./.	./.
chr22	29885728	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,8:31:117:0.068:2	./.	0/1:84,6:30:90:0.067:2	./.	./.	0/1:80,7:32:87:0.080:2	./.	./.
chr22	29885861	rs165923	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:52,20:33:72:0.278:2	0/1:17,17:31:34:0.500:2	0/1:3,4:32:7:0.571:2	./.	0/1:0,43:31:43:1.00:2	0/1:42,32:32:74:0.432:2	0/1:0,52:32:52:1.00:2	0/1:47,38:32:85:0.447:2	0/1:0,63:33:63:1.00:2	0/1:0,52:32:54:1.00:2	0/1:0,65:32:65:1.00:2
chr22	29886043	rs165602	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,8:29:18:0.444:2	./.	./.	./.	0/1:9,13:29:22:0.591:2	./.	./.
chr22	29886413	rs165625	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:29,34:31:63:0.540:2	0/1:23,15:31:38:0.395:2	0/1:4,3:32:7:0.429:2	./.	0/1:0,55:31:55:1.00:2	0/1:44,26:32:70:0.371:2	0/1:0,55:31:55:1.00:2	0/1:52,38:31:90:0.422:2	0/1:0,58:31:58:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,73:31:73:1.00:2
chr22	29904519	rs2283859	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,20:31:41:0.488:2	0/1:14,11:32:25:0.440:2	0/1:4,4:30:8:0.500:2	0/1:0,38:32:38:1.00:2	./.	./.	./.	0/1:24,37:33:61:0.607:2	./.	./.	./.
chr22	29908072	rs1049534	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,74:31:143:0.517:2	0/1:46,41:31:87:0.471:2	0/1:12,6:31:18:0.333:2	0/1:5,121:30:126:0.960:2	./.	0/1:77,77:29:154:0.500:2	./.	0/1:109,70:30:179:0.391:2	./.	./.	./.
chr22	29913272	rs737976	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,49:31:118:0.415:2	0/1:49,29:32:78:0.372:2	0/1:13,12:31:25:0.480:2	0/1:0,164:31:164:1.00:2	./.	0/1:0,168:31:168:1.00:2	0/1:91,77:32:168:0.458:2	0/1:113,76:31:189:0.402:2	./.	./.	./.
chr22	29924118	rs188617925	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,67:33:142:0.472:2	./.	./.	./.
chr22	29957570	rs1058642	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,21:32:73:0.288:2	0/1:41,33:32:74:0.446:2	./.	0/1:36,28:33:65:0.438:2	./.	./.
chr22	29960335	rs456300	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:22,18:32:40:0.450:2	0/1:10,10:33:20:0.500:2	./.	./.	0/1:0,21:32:22:1.00:2	./.	0/1:20,12:32:32:0.375:2	0/1:18,16:33:34:0.471:2	0/1:27,17:33:44:0.386:2	0/1:0,36:33:36:1.00:2	0/1:0,44:32:44:1.00:2
chr22	29966223	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:31:102:0.039:2	./.	./.	./.	./.	./.
chr22	30064362	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:34:196:0.020:2	./.	./.
chr22	30090806	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,12:11:48:0.255:2
chr22	30125104	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:31:135:0.030:2	./.	./.
chr22	30186467	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:32:64:0.063:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	30200713	rs36571	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:112,78:30:192:0.411:2	./.	./.	./.	0/1:92,85:31:177:0.480:2	./.	./.
chr22	30200761	rs28265	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:112,75:31:187:0.401:2	./.	./.	./.	0/1:88,79:33:167:0.473:2	./.	./.
chr22	30200801	rs117333854	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,63:26:124:0.508:2
chr22	30209433	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:32:110:0.036:2	./.	./.	./.	./.	./.
chr22	30221120	rs11549795	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,37:28:105:0.356:2	./.	./.	./.	0/1:47,51:28:99:0.520:2	./.	./.
chr22	30229641	rs56332559	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,15:31:36:0.417:2	./.	./.	./.	0/1:20,13:33:33:0.394:2	./.	./.
chr22	30367014	rs16988135	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,4:31:21:0.190:2	./.	0/1:11,13:29:25:0.542:2
chr22	30403951	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:125,4:30:129:0.031:2	./.	./.	./.	./.	./.	./.	./.
chr22	30403996	rs2074204	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:86,58:31:144:0.403:2	./.	./.	./.	0/1:0,142:32:142:1.00:2	./.	0/1:72,88:31:160:0.550:2
chr22	30416527	rs41278853	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,37:32:94:0.394:2	./.	./.	./.	0/1:40,35:33:75:0.467:2	./.	./.
chr22	30685364	rs5763932	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,23:32:24:0.958:2	./.	./.	0/1:2,4:32:6:0.667:2	0/1:0,3:33:3:1.00:2	0/1:0,7:33:7:1.00:2	./.	./.
chr22	30685495	rs1860216	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:34:3:0.667:2
chr22	30688659	rs4823086	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,19:30:38:0.500:2	./.	./.	./.	./.	./.	./.	./.
chr22	30689998	rs11089442	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:103,90:31:193:0.466:2	0/1:1,181:31:182:0.995:2	./.	./.	./.	0/1:98,49:31:147:0.333:2	./.
chr22	30700607	rs4823089	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,81:32:81:1.00:2	./.	./.	0/1:40,40:33:80:0.500:2	0/1:50,46:31:96:0.479:2	0/1:42,37:33:79:0.468:2	./.	./.
chr22	30714684	rs740219	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,23:31:46:0.500:2	0/1:21,13:33:34:0.382:2	0/1:3,7:33:10:0.700:2	0/1:0,80:32:80:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,69:33:69:1.00:2	0/1:44,55:31:99:0.556:2	0/1:0,58:33:58:1.00:2	0/1:0,60:32:60:1.00:2	0/1:1,66:31:67:0.985:2
chr22	30733111	rs2229807	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,62:30:63:0.984:2	./.	./.	0/1:27,16:30:43:0.372:2	0/1:38,38:30:76:0.500:2	0/1:26,43:32:69:0.623:2	./.	./.
chr22	30733701	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,5:20:20:0.250:2	./.	./.	./.
chr22	30735207	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:35:98:0.041:2	./.
chr22	30737771	rs34244534	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,54:29:127:0.425:2	./.	./.	./.	./.
chr22	30741025	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:31:140:0.029:2
chr22	30762139	rs41281641	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,11:32:21:0.524:2	./.	./.	./.	./.	./.	./.	0/1:32,24:32:56:0.429:2	./.
chr22	30762140	rs740223	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,89:32:90:0.989:2	./.	./.	0/1:46,47:31:93:0.505:2	0/1:47,42:32:89:0.472:2	0/1:25,30:32:55:0.545:2	./.	./.
chr22	30762178	rs41281643	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,29:33:66:0.439:2	./.	./.
chr22	30762330	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,15:19:171:0.088:2	./.	./.
chr22	30765502	rs5749080	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,58:31:59:0.983:2	./.	./.	0/1:35,24:31:59:0.407:2	0/1:24,40:32:64:0.625:2	0/1:25,33:34:58:0.569:2	./.	./.
chr22	30768124	rs199978521	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,6:18:45:0.133:2	./.
chr22	30771554	rs2015035	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:32:42:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,3:24:3:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,68:31:68:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,40:31:40:1.00:2
chr22	30772686	rs2286442	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:31,31:30:62:0.500:2	0/1:19,11:32:30:0.367:2	./.	./.	0/1:35,64:31:99:0.646:2	./.	./.	./.	./.	./.	0/1:0,68:30:68:1.00:2
chr22	30775675	rs35711436	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,70:31:70:1.00:2	./.	./.	0/1:46,48:32:94:0.511:2	0/1:63,42:31:105:0.400:2	0/1:38,48:32:86:0.558:2	./.	./.
chr22	30776095	rs5749088	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,60:27:61:0.984:2	./.	./.	0/1:50,52:28:102:0.510:2	0/1:49,53:27:102:0.520:2	0/1:28,41:29:69:0.594:2	./.	./.
chr22	30780351	rs140327189	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,45:33:92:0.489:2	./.	./.
chr22	30782089	rs5997629	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:13,9:30:22:0.409:2	0/1:11,4:32:15:0.267:2	./.	./.	0/1:26,18:30:44:0.409:2	./.	0/1:28,29:31:57:0.509:2	./.	./.	./.	./.
chr22	30782731	rs12171261	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,25:32:25:1.00:2	./.	./.	./.	0/1:8,11:33:19:0.579:2	./.
chr22	30793137	rs757660	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:8,18:31:26:0.692:2	0/1:7,14:32:21:0.667:2	./.	./.	0/1:22,7:31:29:0.241:2	./.	0/1:21,7:32:28:0.250:2	./.	./.	./.	0/1:0,8:28:8:1.00:2
chr22	30794719	rs11089447	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,124:31:126:0.984:2	./.	./.	./.	0/1:64,60:32:124:0.484:2	./.
chr22	30823113	rs2072160	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,133:32:135:0.993:2	./.	./.	./.	0/1:45,43:33:88:0.489:2	./.
chr22	30823196	rs5753130	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:54,35:28:89:0.393:2	0/1:24,32:28:56:0.571:2	./.	./.	0/1:73,68:28:141:0.482:2	0/1:1,100:28:101:0.990:2	0/1:88,43:29:131:0.328:2	./.	./.	0/1:47,32:29:79:0.405:2	0/1:1,91:28:92:0.989:2
chr22	30823250	rs9606726	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,38:33:89:0.427:2	./.	./.
chr22	30857373	rs2240345	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:38,33:31:71:0.465:2	0/1:18,27:32:45:0.600:2	0/1:1,5:33:6:0.833:2	./.	0/1:2,89:31:91:0.978:2	0/1:1,87:32:88:0.989:2	0/1:76,39:32:115:0.339:2	./.	0/1:48,45:33:93:0.484:2	0/1:0,74:31:74:1.00:2	0/1:47,40:32:88:0.460:2
chr22	30857448	rs5749104	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:35,29:27:64:0.453:2	0/1:24,20:29:44:0.455:2	0/1:2,6:31:8:0.750:2	./.	0/1:3,73:29:76:0.961:2	0/1:1,83:29:84:0.988:2	0/1:32,39:30:71:0.549:2	./.	0/1:36,37:30:73:0.507:2	0/1:37,23:31:60:0.383:2	0/1:40,32:30:72:0.444:2
chr22	30860830	rs2269961	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:32:9:0.333:2	./.	0/1:47,29:32:76:0.382:2	./.	0/1:50,36:32:86:0.419:2	0/1:140,4:33:145:0.028:2	./.	0/1:50,26:33:76:0.342:2	./.
chr22	30862400	rs1057995	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:44,39:30:83:0.470:2	0/1:26,8:30:34:0.235:2	./.	./.	0/1:0,55:30:56:1.00:2	0/1:1,93:30:94:0.989:2	0/1:39,28:30:67:0.418:2	./.	0/1:67,54:31:121:0.446:2	0/1:0,69:31:69:1.00:2	0/1:39,30:30:69:0.435:2
chr22	30864610	rs4820853	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:37,45:31:82:0.549:2	0/1:0,63:31:63:1.00:2	./.	./.	./.	0/1:33,14:32:47:0.298:2	0/1:29,14:30:43:0.326:2
chr22	30864792	rs2269962	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:33,27:30:60:0.450:2	0/1:1,73:31:74:0.986:2	./.	./.	./.	0/1:15,30:31:45:0.667:2	0/1:24,16:31:40:0.400:2
chr22	30864817	rs2269963	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:29,16:33:46:0.356:2	0/1:18,12:31:30:0.400:2	0/1:2,9:31:11:0.818:2	./.	0/1:0,53:32:53:1.00:2	0/1:1,73:32:74:0.986:2	0/1:51,36:32:87:0.414:2	./.	0/1:35,16:33:51:0.314:2	0/1:0,44:32:44:1.00:2	0/1:24,16:33:40:0.400:2
chr22	30888494	rs17738527	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,11:30:20:0.550:2	0/1:1,123:30:124:0.992:2	0/1:62,51:29:113:0.451:2	./.	0/1:101,53:30:154:0.344:2	0/1:0,144:30:144:1.00:2	0/1:93,54:30:147:0.367:2	./.	0/1:61,56:31:117:0.479:2
chr22	30888527	rs17738540	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,12:31:24:0.500:2	0/1:0,113:31:113:1.00:2	0/1:56,48:31:104:0.462:2	./.	0/1:88,57:32:145:0.393:2	0/1:0,136:31:136:1.00:2	0/1:91,50:32:141:0.355:2	./.	0/1:70,53:32:124:0.431:2
chr22	30890886	rs55650691	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,26:31:68:0.382:2	./.	./.	./.	./.	./.
chr22	30891250	rs9606738	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,5:33:9:0.556:2	0/1:0,79:33:79:1.00:2	0/1:36,45:32:81:0.556:2	./.	0/1:49,36:33:85:0.424:2	0/1:2,61:32:63:0.968:2	0/1:26,34:33:60:0.567:2	./.	0/1:31,27:33:58:0.466:2
chr22	30891294	rs9606739	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:31:7:0.429:2	0/1:1,72:32:73:0.986:2	0/1:40,56:31:96:0.583:2	./.	0/1:64,43:32:107:0.402:2	0/1:4,64:32:68:0.941:2	0/1:41,34:33:75:0.453:2	./.	0/1:41,32:31:73:0.438:2
chr22	30891300	rs77679347	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,27:31:74:0.365:2	./.	./.	./.	./.	./.
chr22	30901592	rs9608956	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	0/1:0,6:27:6:1.00:2	./.	./.	./.
chr22	30921371	rs6518698	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,7:33:14:0.500:2	0/1:0,113:32:113:1.00:2	0/1:75,77:32:152:0.507:2	./.	./.	0/1:1,176:32:177:0.994:2	0/1:68,54:33:122:0.443:2	./.	0/1:47,47:32:94:0.500:2
chr22	30927975	rs5749118	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,41:31:41:1.00:2	0/1:0,20:33:20:1.00:2	./.	0/1:0,50:32:50:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,34:30:34:1.00:2	0/1:20,14:32:34:0.412:2	0/1:26,22:32:48:0.458:2	0/1:0,20:34:20:1.00:2	0/1:0,33:33:33:1.00:2	0/1:21,15:32:36:0.417:2
chr22	30934816	rs5753190	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,51:31:51:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,89:31:90:1.00:2	0/1:4,101:30:105:0.962:2	./.	0/1:64,49:31:113:0.434:2	0/1:0,95:30:96:1.00:2	0/1:1,71:32:72:0.986:2	0/1:28,34:31:62:0.548:2	0/1:0,54:31:54:1.00:2
chr22	30934887	rs5753191	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,43:30:43:1.00:2	0/1:0,25:32:25:1.00:2	./.	./.	0/1:51,52:30:104:0.505:2	./.	./.	./.	0/1:29,30:32:59:0.508:2	0/1:37,33:31:70:0.471:2	0/1:33,39:31:72:0.542:2
chr22	30953295	rs2267161	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:88,59:30:147:0.401:2	0/1:47,29:30:76:0.382:2	0/1:9,8:28:17:0.471:2	0/1:102,84:31:186:0.452:2	./.	./.	./.	./.	0/1:98,88:32:186:0.473:2	0/1:80,92:31:172:0.535:2	./.
chr22	30977353	rs42942	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,25:32:67:0.373:2	./.	./.	./.	./.
chr22	31006860	rs9606756	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:47,37:32:84:0.440:2	0/1:18,19:32:37:0.514:2	./.	./.	./.	./.	./.	./.	./.	0/1:41,54:32:95:0.568:2	0/1:42,56:32:98:0.571:2
chr22	31011610	rs1801198	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,32:33:61:0.525:2	0/1:13,13:31:26:0.500:2	./.	0/1:34,38:33:72:0.528:2	0/1:2,58:31:60:0.967:2	0/1:46,34:33:80:0.425:2	0/1:52,24:33:76:0.316:2	./.	0/1:17,29:33:46:0.630:2	0/1:25,24:32:49:0.490:2	0/1:37,25:32:62:0.403:2
chr22	31011752	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,43:31:91:0.473:2	./.	./.	./.	./.	./.
chr22	31013419	rs9621049	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:38,48:31:86:0.558:2	0/1:33,20:32:53:0.377:2	./.	./.	./.	./.	0/1:71,61:31:132:0.462:2	./.	./.	0/1:69,47:31:116:0.405:2	0/1:66,43:32:109:0.394:2
chr22	31019044	rs4820889	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:37,23:31:60:0.383:2	./.	./.	./.	./.	./.	./.	./.
chr22	31032656	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:30:81:0.049:2	./.	./.
chr22	31032881	rs8136373	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,25:31:52:0.481:2	./.	./.	./.	./.
chr22	31032920	rs5997714	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:14,4:30:18:0.222:2	./.	./.	0/1:10,4:30:14:0.286:2	0/1:1,8:29:9:0.889:2	0/1:12,3:31:15:0.200:2	0/1:12,6:30:18:0.333:2	./.	0/1:11,4:33:15:0.267:2	0/1:7,3:30:10:0.300:2	./.
chr22	31045233	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:123,4:31:127:0.031:2	./.	./.	./.	./.	./.	./.
chr22	31060029	rs1005887	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:37,41:33:78:0.526:2	0/1:18,25:33:43:0.581:2	./.	./.	0/1:60,66:33:126:0.524:2	./.	0/1:83,90:33:174:0.520:2	./.	./.	0/1:36,34:33:70:0.486:2	0/1:48,43:33:91:0.473:2
chr22	31061521	rs117531294	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,11:31:26:0.423:2	./.
chr22	31091064	rs41279967	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,13:32:22:0.591:2	0/1:4,5:32:9:0.556:2	./.	./.	./.	0/1:9,24:32:33:0.727:2	./.	./.	./.	./.	./.
chr22	31091139	rs13053290	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:33,27:30:60:0.450:2	0/1:11,18:32:29:0.621:2	0/1:9,6:33:15:0.400:2	./.	./.	0/1:0,94:31:94:1.00:2	./.	0/1:76,31:32:107:0.290:2	./.	./.	./.
chr22	31266546	rs2301816	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,6:29:8:0.750:2	0/1:49,41:30:90:0.456:2	0/1:62,42:28:104:0.404:2	0/1:2,56:29:58:0.966:2	0/1:58,47:29:105:0.448:2	0/1:49,38:30:87:0.437:2	0/1:0,88:30:88:1.00:2	0/1:0,58:29:58:1.00:2	0/1:35,26:27:61:0.426:2
chr22	31289636	rs371610293	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,20:32:51:0.392:2	0/1:15,17:32:32:0.531:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	31302233	rs3804085	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,15:31:15:1.00:2	0/1:67,46:32:113:0.407:2	./.	0/1:0,87:31:87:1.00:2	0/1:70,56:31:126:0.444:2	0/1:60,51:31:111:0.459:2	./.	0/1:40,25:31:65:0.385:2	./.
chr22	31328403	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:32:117:0.035:2	./.	./.	./.
chr22	31333631	rs3747151	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,6:31:6:1.00:2	0/1:29,20:31:49:0.408:2	./.	0/1:0,40:30:40:1.00:2	0/1:26,19:31:45:0.422:2	0/1:21,18:31:39:0.462:2	./.	0/1:27,16:29:43:0.372:2	./.
chr22	31333872	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:31:90:0.044:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	31342376	rs2072132	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,17:29:17:1.00:2	0/1:107,59:29:166:0.355:2	./.	0/1:1,169:30:170:0.994:2	0/1:101,68:29:169:0.402:2	0/1:91,86:29:177:0.486:2	./.	0/1:76,77:29:153:0.503:2	./.
chr22	31354653	rs737924	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,15:32:15:1.00:2	0/1:34,34:32:68:0.500:2	./.	0/1:0,64:32:64:1.00:2	0/1:26,35:33:61:0.574:2	0/1:37,52:32:89:0.584:2	./.	0/1:24,28:33:52:0.538:2	./.
chr22	31485788	rs370156932	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:32:7:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	31485841	rs201712997	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,9:13:48:0.191:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	31489575	rs62236130	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,7:32:11:0.636:2	0/1:2,4:31:6:0.667:2	0/1:0,15:32:15:1.00:2	./.	./.	./.	0/1:1,7:31:8:0.875:2	./.
chr22	31491295	rs3205187	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:32:27:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,7:30:7:1.00:2	0/1:1,28:32:29:0.966:2	0/1:0,15:32:15:1.00:2	0/1:0,14:32:14:1.00:2	0/1:15,14:32:29:0.483:2	0/1:0,27:31:27:1.00:2	0/1:18,5:32:23:0.217:2	0/1:0,34:32:34:1.00:2	0/1:0,33:31:33:1.00:2
chr22	31491332	rs5997872	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,24:30:43:0.558:2	./.	./.	./.	0/1:25,29:30:54:0.537:2
chr22	31521404	rs2240432	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:23,19:31:42:0.452:2	0/1:9,13:32:22:0.591:2	./.	0/1:74,4:32:78:0.051:2	./.	./.	0/1:36,45:32:81:0.556:2	0/1:2,79:32:81:0.975:2	0/1:33,36:32:69:0.522:2	0/1:20,17:32:37:0.459:2	./.
chr22	31521595	rs41282561	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,17:29:47:0.362:2	./.	./.	./.	0/1:21,25:29:46:0.543:2
chr22	31521850	rs2240431	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:33:33:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,46:33:46:1.00:2	0/1:62,26:32:88:0.295:2	0/1:0,64:33:64:1.00:2	0/1:49,47:33:96:0.490:2	0/1:0,53:33:53:1.00:2	0/1:21,22:32:43:0.512:2
chr22	31522449	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,47:32:122:0.385:2	./.	./.	./.	./.
chr22	31523978	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,9:29:77:0.117:2
chr22	31529463	rs35342535	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,22:32:41:0.537:2	0/1:9,13:32:22:0.591:2	0/1:4,8:31:12:0.667:2	0/1:1,69:30:70:0.986:2	0/1:0,49:31:49:1.00:2	0/1:0,62:31:62:1.00:2	./.	./.	./.	0/1:15,21:32:36:0.583:2	0/1:38,31:31:69:0.449:2
chr22	31532960	rs2232183	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:34,40:32:74:0.541:2	0/1:18,25:32:43:0.581:2	./.	./.	0/1:4,141:32:145:0.972:2	./.	./.	./.	./.	./.	./.
chr22	31533796	rs2072193	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,45:32:130:0.346:2	./.	./.	0/1:67,33:33:100:0.330:2	./.
chr22	31533967	rs2074739	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,10:29:19:0.526:2	0/1:10,8:31:18:0.444:2	./.	0/1:7,15:31:22:0.682:2	0/1:0,21:29:21:1.00:2	0/1:4,9:28:13:0.692:2	0/1:0,16:29:16:1.00:2	./.	./.	0/1:5,12:32:17:0.706:2	0/1:8,8:31:16:0.500:2
chr22	31535872	rs2074735	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,81:32:171:0.474:2	./.	./.	0/1:56,48:32:104:0.462:2	./.
chr22	31535995	rs2074734	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,50:32:94:0.532:2	./.	./.	./.	0/1:55,42:31:97:0.433:2
chr22	31536133	rs2232176	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,28:32:28:1.00:2	0/1:0,12:32:12:1.00:2	./.	0/1:0,33:32:33:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,23:32:23:1.00:2	0/1:17,16:33:33:0.485:2
chr22	31621792	rs5997917	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:68,62:32:130:0.477:2	0/1:41,35:32:76:0.461:2	./.	./.	./.	./.	./.	0/1:4,171:32:175:0.977:2	0/1:0,153:32:153:1.00:2	./.	./.
chr22	31655196	rs55638065	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,59:29:113:0.522:2	./.
chr22	31658205	rs34930775	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,86:32:167:0.515:2	./.
chr22	31663842	rs2228619	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:32:39:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,4:34:4:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,60:33:60:1.00:2	0/1:0,54:33:54:1.00:2	0/1:50,36:33:86:0.419:2	0/1:0,62:33:62:1.00:2	0/1:0,44:33:44:1.00:2	0/1:0,42:33:42:1.00:2	0/1:23,26:33:49:0.531:2
chr22	31679110	rs2040533	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,43:28:43:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,42:30:43:1.00:2	0/1:0,63:30:63:1.00:2	0/1:26,36:30:62:0.581:2	0/1:0,61:29:61:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,43:30:43:1.00:2	0/1:32,22:28:54:0.407:2
chr22	31737436	rs62236170	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,22:30:51:0.431:2
chr22	31741067	rs714909	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,40:28:98:0.408:2	./.	./.	./.	0/1:43,53:30:96:0.552:2
chr22	31822711	rs369620921	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:32:40:0.100:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	31835875	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:33:40:0.100:2	./.	./.
chr22	31838085	rs5997988	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,44:31:95:0.463:2	0/1:27,22:31:49:0.449:2	0/1:0,15:29:15:1.00:2	0/1:4,105:31:109:0.963:2	0/1:2,66:31:68:0.971:2	0/1:2,80:30:82:0.976:2	./.	./.	./.	0/1:46,32:31:78:0.410:2	./.
chr22	31859859	rs5753627	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,27:33:51:0.529:2	./.	./.	./.	./.
chr22	31942898	rs146504169	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,33:32:71:0.465:2	./.
chr22	31971258	rs5753700	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,16:32:16:1.00:2	0/1:1,111:32:112:0.991:2	0/1:0,158:31:158:1.00:2	0/1:0,141:32:141:1.00:2	0/1:2,153:32:155:0.987:2	0/1:0,147:32:147:1.00:2	0/1:0,131:33:131:1.00:2	0/1:0,104:32:104:1.00:2	0/1:0,121:32:123:1.00:2
chr22	31971282	rs16989291	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:41,36:30:77:0.468:2	0/1:29,18:29:47:0.383:2	./.	./.	./.	./.	./.	0/1:3,133:29:136:0.978:2	0/1:2,122:30:124:0.984:2	./.	./.
chr22	31976299	rs55894054	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,73:31:166:0.440:2	./.
chr22	31979911	rs140987552	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,34:32:58:0.586:2	./.
chr22	31998612	rs2006771	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,46:32:105:0.438:2	0/1:46,37:32:83:0.446:2	0/1:0,9:32:9:1.00:2	0/1:5,175:32:180:0.972:2	0/1:0,194:31:194:1.00:2	0/1:1,169:31:170:0.994:2	./.	./.	./.	0/1:78,67:31:145:0.462:2	./.
chr22	31998739	rs61742595	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,32:31:51:0.627:2	./.
chr22	32009153	rs200742294	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:30:77:0.052:2	./.	./.	./.
chr22	32009189	rs372099956	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,32:31:62:0.516:2	./.	./.
chr22	32011225	rs12171042	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	0/1:0,3:34:3:1.00:2	./.	./.
chr22	32013050	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,5:27:83:0.061:2	./.	./.	./.	./.
chr22	32110163	rs140078	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,19:30:45:0.422:2	./.	./.	0/1:26,31:32:57:0.544:2	./.
chr22	32111553	rs140450525	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,89:31:195:0.456:2	./.
chr22	32112461	rs140081	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,15:33:31:0.484:2	./.	./.	0/1:28,11:33:39:0.282:2	./.
chr22	32164790	rs116263417	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,58:32:130:0.446:2	./.	./.	./.	./.
chr22	32194581	rs16989495	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,5:32:18:0.278:2	./.	./.	./.	./.
chr22	32200161	rs79070552	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,37:32:86:0.435:2	./.
chr22	32211412	rs5749334	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,4:29:8:0.500:2	./.	0/1:0,14:32:14:1.00:2	./.	./.	0/1:4,6:34:10:0.600:2	0/1:0,22:33:22:1.00:2
chr22	32215156	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,5:28:98:0.051:2	./.	./.	./.	./.	./.	./.
chr22	32217539	rs16989528	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,42:30:79:0.538:2	./.	./.	./.	./.
chr22	32218727	rs61731667	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,24:31:63:0.381:2	./.
chr22	32234797	rs61731664	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,16:27:33:0.485:2	./.
chr22	32241149	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,40:29:92:0.435:2	./.
chr22	32266603	rs61731662	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,33:33:63:0.524:2	./.
chr22	32297759	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:69,4:31:73:0.055:2	./.	./.	./.	./.	./.	./.
chr22	32302045	rs146449468	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,43:32:98:0.439:2	./.
chr22	32330276	rs370888247	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,85:30:179:0.475:2	./.	./.	./.
chr22	32334021	rs1984388	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,50:32:53:0.943:2	./.	0/1:54,26:32:80:0.325:2	./.	./.	./.	./.
chr22	32439274	rs33973317	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,35:30:80:0.438:2	./.	./.	./.	./.
chr22	32445946	rs17683011	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,65:32:135:0.481:2
chr22	32487700	rs17683430	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,11:31:34:0.333:2
chr22	32487744	rs17683448	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:14,7:29:22:0.333:2
chr22	32506041	rs17683704	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,47:32:130:0.362:2
chr22	32506050	rs33954001	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,47:33:140:0.336:2
chr22	32506104	rs33943816	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,185:32:189:0.979:2	./.	./.	0/1:121,78:31:199:0.392:2	./.	./.	./.	./.
chr22	32506143	rs33954397	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,71:32:189:0.376:2
chr22	32545762	rs45494991	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,46:32:118:0.390:2
chr22	32545789	rs45462396	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,67:31:169:0.396:2
chr22	32546946	rs2019949	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,113:32:113:1.00:2	0/1:2,85:32:87:0.977:2	./.	0/1:82,75:31:157:0.478:2	./.	./.	0/1:55,41:31:96:0.427:2	0/1:0,131:31:131:1.00:2	./.	0/1:62,66:32:128:0.516:2	0/1:104,85:32:189:0.450:2
chr22	32547000	rs201521774	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:31:154:0.026:2	./.	./.	./.	./.	./.
chr22	32547012	rs3888536	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,71:31:71:1.00:2	0/1:1,52:32:53:0.981:2	./.	0/1:47,48:31:95:0.505:2	./.	0/1:124,4:30:128:0.031:2	0/1:22,20:32:42:0.476:2	0/1:2,71:31:73:0.973:2	./.	0/1:42,41:31:83:0.494:2	0/1:56,46:32:102:0.451:2
chr22	32547504	rs55920759	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,95:31:189:0.505:2	./.	./.	./.
chr22	32548075	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,5:29:110:0.045:2	./.	./.	./.
chr22	32550293	rs142906642	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:62,82:31:144:0.569:2	./.	./.	0/1:60,56:32:116:0.483:2	./.	./.	./.	./.
chr22	32550296	rs185030045	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,7:30:147:0.048:2	./.	0/1:121,11:31:132:0.083:2	0/1:183,11:33:194:0.057:2
chr22	32554985	rs5998267	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:3,151:29:154:0.981:2	0/1:0,103:28:103:1.00:2	./.	0/1:104,88:29:192:0.458:2	0/1:0,194:28:194:1.00:2	./.	0/1:2,168:28:170:0.988:2	0/1:1,187:28:188:0.995:2	./.	0/1:109,84:28:193:0.435:2	0/1:117,69:27:187:0.371:2
chr22	32554996	rs12160688	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,68:30:187:0.364:2
chr22	32586854	rs136467	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:100,11:30:111:0.099:2	0/1:67,9:32:76:0.118:2	./.	0/1:129,18:32:147:0.122:2	0/1:133,13:30:146:0.089:2	0/1:2,22:30:24:0.917:2	0/1:2,29:31:31:0.935:2	0/1:5,31:31:36:0.861:2	0/1:1,24:31:25:0.960:2	0/1:76,12:31:88:0.136:2	0/1:103,22:31:125:0.176:2
chr22	32586875	rs136468	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:105,12:30:117:0.103:2	0/1:68,6:31:74:0.081:2	./.	0/1:123,22:32:145:0.152:2	0/1:115,14:31:129:0.109:2	0/1:2,42:30:44:0.955:2	0/1:3,28:31:31:0.903:2	0/1:9,58:31:67:0.866:2	0/1:2,26:30:28:0.929:2	0/1:87,20:29:108:0.187:2	0/1:116,16:31:132:0.121:2
chr22	32586878	rs136469	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:101,13:30:114:0.114:2	0/1:64,8:32:72:0.111:2	./.	0/1:120,22:32:142:0.155:2	0/1:114,16:31:130:0.123:2	0/1:2,43:31:45:0.956:2	0/1:2,28:32:30:0.933:2	0/1:7,61:31:68:0.897:2	0/1:1,27:32:28:0.964:2	0/1:91,20:31:111:0.180:2	0/1:123,17:31:140:0.121:2
chr22	32586894	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:133,5:30:138:0.036:2	./.	./.	./.	./.	./.	./.
chr22	32586926	rs136470	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:126,40:32:166:0.241:2	0/1:103,27:32:130:0.208:2	./.	0/1:134,51:32:185:0.276:2	0/1:122,33:32:155:0.213:2	0/1:11,103:32:114:0.904:2	0/1:6,61:32:67:0.910:2	0/1:11,120:32:131:0.916:2	0/1:9,96:33:105:0.914:2	0/1:140,39:32:179:0.218:2	0/1:144,40:32:184:0.217:2
chr22	32587005	rs199566788	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:89,98:33:187:0.524:2	./.	./.	./.	./.	./.	./.	./.
chr22	32587023	rs55974778	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:114,59:30:174:0.341:2	0/1:71,36:29:107:0.336:2	./.	0/1:98,92:30:190:0.484:2	0/1:102,91:30:193:0.472:2	0/1:5,168:30:173:0.971:2	0/1:10,140:30:150:0.933:2	0/1:11,171:30:182:0.940:2	0/1:5,157:31:162:0.969:2	0/1:111,75:30:186:0.403:2	0/1:99,57:29:156:0.365:2
chr22	32587027	rs136472	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:111,64:33:175:0.366:2	0/1:67,38:32:105:0.362:2	./.	0/1:100,92:33:192:0.479:2	0/1:99,94:32:193:0.487:2	0/1:1,178:32:180:0.994:2	0/1:9,152:33:161:0.944:2	0/1:7,183:33:190:0.963:2	0/1:3,165:33:168:0.982:2	0/1:103,83:33:186:0.446:2	0/1:97,63:32:160:0.394:2
chr22	32587171	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:181,5:30:186:0.027:2	./.	./.	./.	./.	./.	./.
chr22	32589023	rs136478	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:63,56:30:120:0.471:2	0/1:47,30:31:77:0.390:2	./.	0/1:49,64:29:113:0.566:2	./.	0/1:0,118:29:118:1.00:2	0/1:3,87:28:91:0.967:2	0/1:2,110:29:112:0.982:2	0/1:1,119:30:120:0.992:2	0/1:58,44:29:102:0.431:2	0/1:73,72:31:146:0.497:2
chr22	32589034	rs136479	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:56,51:32:107:0.477:2	0/1:47,28:32:75:0.373:2	./.	0/1:51,58:33:109:0.532:2	0/1:41,32:32:73:0.438:2	0/1:1,112:32:113:0.991:2	0/1:1,80:32:81:0.988:2	0/1:3,107:32:110:0.973:2	0/1:1,112:33:113:0.991:2	0/1:57,45:32:103:0.441:2	0/1:73,68:32:142:0.482:2
chr22	32589090	rs8135276	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,106:30:109:0.972:2	./.	./.	0/1:57,57:31:114:0.500:2	0/1:44,42:31:86:0.488:2	./.
chr22	32589196	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:29:80:0.050:2	./.
chr22	32590448	rs3986037	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,25:30:53:0.472:2	./.	./.	./.
chr22	32590449	rs108211	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,23:28:55:0.418:2	0/1:12,8:32:20:0.400:2	./.	0/1:23,20:30:43:0.465:2	0/1:20,19:29:39:0.487:2	0/1:0,31:29:31:1.00:2	0/1:0,42:30:42:1.00:2	0/1:27,26:28:53:0.491:2	0/1:0,59:30:59:1.00:2	0/1:21,38:29:59:0.644:2	0/1:34,30:29:64:0.469:2
chr22	32590471	rs3986038	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,13:30:35:0.371:2	./.	./.	./.
chr22	32598367	rs185933035	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,33:31:67:0.493:2	./.	./.	./.	./.
chr22	32625210	rs5998322	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,48:30:114:0.421:2	./.	./.	./.	./.	./.	./.
chr22	32650200	rs2235171	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,25:31:55:0.455:2	./.	./.	./.	./.	./.
chr22	32651262	rs12169024	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,102:33:192:0.531:2	./.	./.	./.	./.
chr22	32754091	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:34:180:0.022:2	./.	./.
chr22	32754250	rs376474772	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,6:32:193:0.031:2	./.	./.
chr22	32754256	rs61729170	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,5:32:187:0.027:2	./.	./.
chr22	32754286	rs9621426	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,12:28:27:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	32754386	rs9621427	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,66:31:131:0.504:2
chr22	32756535	rs61729167	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,6:32:192:0.031:2	./.	./.	./.	./.	./.
chr22	32756555	rs136471	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:165,10:32:175:0.057:2	0/1:136,7:31:143:0.049:2	./.	./.	./.	0/1:182,11:31:193:0.057:2	0/1:187,8:33:195:0.041:2	0/1:185,11:32:196:0.056:2	0/1:181,9:32:190:0.047:2	./.	0/1:191,5:32:196:0.026:2
chr22	32756576	rs199572344	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:170,14:31:184:0.076:2	0/1:144,15:32:159:0.094:2	./.	./.	./.	0/1:169,21:31:190:0.111:2	0/1:188,9:33:197:0.046:2	0/1:185,13:31:198:0.066:2	0/1:175,14:33:189:0.074:2	./.	0/1:182,13:32:196:0.067:2
chr22	32756652	rs201161881	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:139,33:33:172:0.192:2	0/1:140,26:32:166:0.157:2	./.	0/1:155,31:33:186:0.167:2	0/1:144,21:32:165:0.127:2	0/1:135,50:33:185:0.270:2	0/1:153,40:32:193:0.207:2	0/1:143,48:33:191:0.251:2	0/1:149,33:34:182:0.181:2	0/1:163,28:33:191:0.147:2	0/1:153,31:33:184:0.168:2
chr22	32756684	rs61729165	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:117,33:30:150:0.220:2	0/1:113,28:31:141:0.199:2	./.	0/1:132,51:29:183:0.279:2	0/1:148,32:29:180:0.178:2	0/1:121,62:29:183:0.339:2	0/1:135,56:29:191:0.293:2	0/1:134,57:30:191:0.298:2	0/1:113,59:31:172:0.343:2	0/1:145,40:30:185:0.216:2	0/1:137,39:31:176:0.222:2
chr22	32756703	rs73166367	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:124,43:32:167:0.257:2	0/1:104,32:32:136:0.235:2	./.	0/1:125,59:32:184:0.321:2	0/1:143,49:31:192:0.255:2	0/1:108,80:31:188:0.426:2	0/1:115,78:31:193:0.404:2	0/1:110,80:32:190:0.421:2	0/1:116,66:32:182:0.363:2	0/1:133,43:32:176:0.244:2	0/1:125,52:32:177:0.294:2
chr22	32756744	rs2076035	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,12:31:20:0.600:2	0/1:128,59:33:188:0.316:2	0/1:138,37:32:175:0.211:2	0/1:124,53:33:177:0.299:2	0/1:81,93:33:174:0.534:2	0/1:135,52:33:187:0.278:2	./.	0/1:107,63:33:170:0.371:2	0/1:114,58:32:172:0.337:2
chr22	32759025	rs5998440	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,21:29:44:0.477:2	./.	0/1:33,24:29:57:0.421:2	0/1:2,34:30:36:0.944:2	./.	./.	./.	0/1:35,24:28:59:0.407:2
chr22	32766927	rs12168441	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,11:33:22:0.500:2	./.	./.	./.	./.	./.	./.	0/1:99,77:32:176:0.438:2	./.
chr22	32788248	rs13110	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,22:31:74:0.297:2	./.	./.	./.	./.	./.
chr22	32795626	rs57526188	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,53:33:105:0.505:2	./.	./.	./.	./.	./.
chr22	32795641	rs5749426	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:32:9:0.667:2	./.	0/1:67,35:32:102:0.343:2	0/1:62,54:32:116:0.466:2	./.	0/1:136,4:33:140:0.029:2	./.	0/1:54,28:33:82:0.341:2	0/1:43,33:32:76:0.434:2
chr22	32802680	rs35003092	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,38:32:81:0.469:2	./.	./.	./.	./.	./.
chr22	32808078	rs11545749	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:12,13:30:25:0.520:2	./.	./.	./.	./.	./.	./.
chr22	32810378	rs35856742	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:61,33:33:94:0.351:2	./.	./.	./.	./.	./.	./.
chr22	32811952	rs5998478	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,17:32:42:0.405:2	0/1:17,7:33:24:0.292:2	0/1:5,3:32:8:0.375:2	0/1:16,18:33:34:0.529:2	0/1:16,20:31:36:0.556:2	0/1:2,49:32:52:0.961:2	0/1:3,36:33:39:0.923:2	./.	./.	0/1:23,30:33:53:0.566:2	0/1:26,27:33:53:0.509:2
chr22	32815398	rs55807703	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,12:31:31:0.387:2	./.	./.	./.	./.	./.	./.
chr22	32831711	rs5994570	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,13:33:22:0.591:2	./.	./.	0/1:0,4:33:4:1.00:2	./.	./.	./.	./.
chr22	32831837	rs146292752	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,9:29:25:0.360:2	./.	./.	./.	./.	./.
chr22	32841699	.	T	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,4:22:12:0.333:2	0/1:13,5:18:18:0.278:2	./.	./.	0/1:10,7:12:17:0.412:2	./.	./.
chr22	32841700	rs202091273	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,4:21:11:0.364:2	./.	./.	./.	0/1:9,7:20:16:0.438:2	./.	0/1:6,7:14:13:0.538:2
chr22	32871383	rs8137714	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,14:26:14:1.00:2	0/1:22,11:29:33:0.333:2	./.	./.	0/1:10,11:27:21:0.524:2
chr22	32875034	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:137,4:32:141:0.028:2	./.	./.	./.	./.	./.	./.	./.
chr22	32875044	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:33:147:0.027:2	./.
chr22	32875190	rs11107	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,9:30:12:0.750:2	./.	./.	./.	0/1:0,86:31:87:1.00:2	0/1:90,37:30:127:0.291:2	0/1:85,63:32:148:0.426:2	./.	0/1:74,59:32:133:0.444:2
chr22	32880006	rs41311141	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,90:29:196:0.459:2	./.	./.	./.	./.
chr22	32883776	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,4:32:116:0.034:2	./.	./.	./.	./.	./.	./.	./.
chr22	32887150	rs9726	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.	0/1:0,27:32:27:1.00:2	0/1:29,40:32:69:0.580:2	0/1:15,16:32:31:0.516:2	./.	0/1:27,21:32:48:0.438:2
chr22	32889124	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,7:28:198:0.035:2	./.	./.	./.
chr22	33253280	rs9862	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:80,72:32:152:0.474:2	0/1:5,130:31:135:0.963:2	0/1:63,85:31:148:0.574:2	./.	0/1:108,67:32:175:0.383:2	0/1:0,140:33:140:1.00:2	0/1:0,110:32:110:1.00:2	./.
chr22	33253292	rs11547635	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,55:32:144:0.382:2	./.	./.	./.	./.	0/1:60,59:33:120:0.496:2	./.
chr22	33254051	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:31:163:0.025:2	./.	./.
chr22	33376709	rs16991621	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,16:31:31:0.516:2	./.	./.	0/1:19,25:31:44:0.568:2
chr22	33670499	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,24:10:164:0.146:2	./.	./.
chr22	33670584	rs17722172	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,73:31:140:0.521:2	./.	./.	./.	./.	./.	./.
chr22	33733703	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:109,4:29:113:0.035:2	./.	./.	./.	./.	./.	./.
chr22	34000460	rs36002910	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,61:32:126:0.484:2	./.	./.	./.	./.
chr22	34022284	rs86487	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:27,12:31:39:0.308:2	0/1:18,21:33:39:0.538:2	./.	0/1:26,27:32:53:0.509:2	0/1:42,44:32:86:0.512:2	0/1:34,30:32:64:0.469:2	0/1:35,32:31:67:0.478:2	0/1:34,30:32:64:0.469:2	0/1:44,36:33:80:0.450:2	0/1:37,45:33:82:0.549:2	0/1:1,60:32:61:0.984:2
chr22	35463162	rs361863	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,29:31:55:0.527:2	0/1:24,15:32:39:0.385:2	0/1:8,5:32:13:0.385:2	0/1:28,44:32:72:0.611:2	0/1:28,22:30:50:0.440:2	0/1:0,47:31:47:1.00:2	./.	0/1:69,31:32:100:0.310:2	0/1:0,64:32:64:1.00:2	0/1:0,50:32:50:1.00:2	0/1:43,24:31:67:0.358:2
chr22	35463179	rs361668	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,24:27:50:0.490:2	0/1:21,12:28:34:0.364:2	0/1:4,4:29:8:0.500:2	0/1:26,41:29:67:0.612:2	0/1:21,14:26:36:0.400:2	0/1:0,49:29:49:1.00:2	./.	0/1:64,27:27:91:0.297:2	0/1:0,50:30:50:1.00:2	0/1:0,55:29:55:1.00:2	0/1:39,22:28:61:0.361:2
chr22	35463249	rs362090	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,13:31:31:0.419:2	0/1:14,4:35:18:0.222:2	0/1:4,3:28:7:0.429:2	0/1:10,16:29:26:0.615:2	0/1:10,5:32:15:0.333:2	0/1:0,28:30:28:1.00:2	./.	0/1:22,14:31:36:0.389:2	0/1:0,36:33:36:1.00:2	0/1:20,18:32:38:0.474:2	0/1:26,14:32:40:0.350:2
chr22	35481490	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:33:118:0.034:2	./.	./.
chr22	35481493	rs61735502	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,56:31:92:0.609:2	./.
chr22	35660805	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,3:31:23:0.130:2	./.	./.	./.	./.
chr22	35660875	rs1053593	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:10,8:32:18:0.444:2	0/1:11,4:31:15:0.267:2	0/1:0,4:30:4:1.00:2	0/1:17,11:31:28:0.393:2	0/1:18,13:30:31:0.419:2	0/1:0,33:31:33:1.00:2	0/1:0,25:30:25:1.00:2	0/1:14,13:31:27:0.481:2	0/1:0,27:27:27:1.00:2	0/1:15,10:31:25:0.400:2	0/1:33,16:30:49:0.327:2
chr22	35679951	rs2272789	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,33:30:71:0.465:2	0/1:24,18:31:42:0.429:2	0/1:4,5:32:9:0.556:2	0/1:41,53:32:94:0.564:2	0/1:44,45:31:89:0.506:2	0/1:0,70:30:70:1.00:2	0/1:3,76:32:79:0.962:2	0/1:3,90:31:93:0.968:2	0/1:0,90:33:90:1.00:2	0/1:42,38:32:80:0.475:2	0/1:46,58:31:104:0.558:2
chr22	35679976	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:32:149:0.027:2	./.	./.	./.
chr22	35734779	rs149877665	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,15:30:20:0.750:2	./.	./.	./.
chr22	35741745	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:33:80:0.050:2	./.	./.
chr22	35742925	rs743810	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,8:32:29:0.276:2	./.	./.	0/1:14,23:32:37:0.622:2	./.	0/1:1,18:29:19:0.947:2	./.
chr22	35743124	rs2071745	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,7:29:12:0.583:2	./.	./.	0/1:3,12:32:15:0.800:2	./.	0/1:0,9:32:9:1.00:2	./.
chr22	35782985	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,3:33:44:0.068:2	./.	./.	./.
chr22	35806815	rs133417	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,90:32:178:0.506:2	./.	./.	./.
chr22	35809971	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:30:122:0.033:2	./.	./.	./.	./.	./.
chr22	35815880	rs133427	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,85:30:141:0.603:2	./.	./.	./.
chr22	35947585	rs41279993	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,27:33:61:0.443:2	0/1:23,29:33:52:0.558:2	0/1:12,10:32:22:0.455:2	0/1:59,56:31:115:0.487:2	./.	0/1:4,124:32:129:0.969:2	./.	./.	./.	./.	./.
chr22	36007045	rs7292	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:54,54:32:108:0.500:2	0/1:34,34:32:68:0.500:2	./.	0/1:153,4:32:157:0.025:2	0/1:86,52:32:138:0.377:2	0/1:0,154:32:154:1.00:2	0/1:69,75:32:144:0.521:2	0/1:0,133:32:133:1.00:2	./.	0/1:72,51:32:123:0.415:2	./.
chr22	36007075	rs7293	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:41,56:32:97:0.577:2	0/1:30,29:31:59:0.492:2	./.	./.	0/1:84,50:32:135:0.373:2	0/1:0,126:31:126:1.00:2	0/1:62,68:31:130:0.523:2	0/1:0,128:32:128:1.00:2	./.	0/1:52,42:32:94:0.447:2	./.
chr22	36122517	rs17723764	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:32:3:0.667:2	0/1:31,33:32:64:0.516:2	0/1:40,27:32:67:0.403:2	0/1:24,23:32:47:0.489:2	./.	./.	./.	0/1:35,10:34:45:0.222:2	0/1:41,34:32:75:0.453:2
chr22	36122930	rs2076671	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:42,41:32:83:0.494:2	0/1:19,27:32:46:0.587:2	./.	./.	0/1:48,42:32:90:0.467:2	0/1:53,58:31:111:0.523:2	0/1:1,94:31:95:0.989:2	0/1:59,45:32:104:0.433:2	./.	./.	./.
chr22	36123083	rs2076672	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:32:4:0.750:2	0/1:27,12:32:39:0.308:2	0/1:9,12:30:21:0.571:2	0/1:22,15:31:37:0.405:2	./.	./.	./.	./.	0/1:10,17:33:27:0.630:2
chr22	36124810	rs142361344	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,74:30:135:0.548:2	./.	./.	./.	./.	./.	./.	./.
chr22	36124860	rs2076673	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:32,33:32:65:0.508:2	0/1:19,21:32:40:0.525:2	./.	./.	0/1:47,37:32:84:0.440:2	0/1:40,38:31:78:0.487:2	0/1:0,76:32:76:1.00:2	./.	./.	./.	./.
chr22	36537500	rs132618	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:32:4:1.00:2	0/1:37,26:32:63:0.413:2	0/1:23,41:32:64:0.641:2	0/1:26,28:31:54:0.519:2	0/1:1,39:32:40:0.975:2	0/1:35,33:31:68:0.485:2	0/1:32,29:32:61:0.475:2	0/1:25,15:32:41:0.375:2	0/1:25,32:30:57:0.561:2
chr22	36537725	rs61731692	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,13:30:41:0.317:2	./.	./.	0/1:17,15:31:32:0.469:2	0/1:10,7:31:17:0.412:2	./.
chr22	36537812	rs145617479	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,24:31:57:0.421:2	./.	./.	./.	./.
chr22	36537893	rs3827346	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,56:29:56:1.00:2	0/1:0,35:27:35:1.00:2	./.	./.	0/1:30,33:29:63:0.524:2	./.	./.	0/1:59,29:29:88:0.330:2	./.	./.	./.
chr22	36545137	rs132642	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,55:33:55:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,10:32:10:1.00:2	0/1:37,30:32:67:0.448:2	0/1:0,55:32:56:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,68:33:68:1.00:2	0/1:0,65:32:65:1.00:2	0/1:47,48:33:95:0.505:2
chr22	36556823	rs132653	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,52:31:53:0.981:2	0/1:0,31:31:31:1.00:2	0/1:0,9:30:9:1.00:2	0/1:41,49:31:90:0.544:2	0/1:0,60:31:60:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,73:31:73:1.00:2	0/1:0,98:32:98:1.00:2	0/1:0,51:32:51:1.00:2	0/1:48,40:32:88:0.455:2
chr22	36587202	rs6000172	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,75:31:75:1.00:2	0/1:2,76:31:78:0.974:2	0/1:59,25:32:84:0.298:2	0/1:60,36:31:96:0.375:2	0/1:0,59:31:59:1.00:2	0/1:33,28:31:61:0.459:2	0/1:48,47:31:95:0.495:2
chr22	36587223	rs6000173	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,58:31:58:1.00:2	0/1:2,73:30:75:0.973:2	0/1:54,22:31:76:0.289:2	0/1:51,32:30:83:0.386:2	0/1:0,49:32:49:1.00:2	0/1:28,27:30:55:0.491:2	0/1:44,38:30:82:0.463:2
chr22	36587279	rs6000174	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,31:29:31:1.00:2	0/1:1,60:30:62:0.984:2	0/1:25,27:31:52:0.519:2	0/1:30,22:28:52:0.423:2	0/1:0,55:31:55:1.00:2	0/1:16,15:30:31:0.484:2	0/1:29,33:30:62:0.532:2
chr22	36587486	rs2227167	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,149:32:149:1.00:2	0/1:0,135:32:135:1.00:2	0/1:109,73:32:182:0.401:2	0/1:83,94:32:177:0.531:2	0/1:0,115:33:115:1.00:2	0/1:63,50:34:113:0.442:2	0/1:58,71:32:129:0.550:2
chr22	36587511	rs2227168	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,153:31:154:0.994:2	0/1:0,146:31:146:1.00:2	0/1:105,84:32:189:0.444:2	0/1:96,93:31:189:0.492:2	0/1:1,133:32:134:0.993:2	0/1:68,52:33:121:0.433:2	0/1:60,70:32:130:0.538:2
chr22	36587704	rs132700	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:33:9:1.00:2	./.	./.	./.	./.	0/1:97,68:32:165:0.412:2	./.	./.	0/1:50,47:32:97:0.485:2
chr22	36587952	rs2227169	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,10:32:10:1.00:2	0/1:0,11:29:11:1.00:2	./.	0/1:2,4:31:6:0.667:2	0/1:1,16:32:17:0.941:2	0/1:1,4:32:5:0.800:2	0/1:6,4:31:10:0.400:2
chr22	36591380	rs2007468	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,34:28:35:0.971:2	0/1:0,78:29:78:1.00:2	0/1:20,35:31:55:0.636:2	0/1:48,39:30:87:0.448:2	0/1:0,61:29:61:1.00:2	0/1:23,27:30:50:0.540:2	0/1:37,46:29:83:0.554:2
chr22	36593714	rs190511403	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,7:32:10:0.700:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	36597744	rs9610445	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:34,26:32:60:0.433:2	0/1:33,26:32:59:0.441:2	0/1:61,23:31:84:0.274:2	0/1:35,24:31:59:0.407:2	0/1:41,30:33:71:0.423:2	0/1:21,18:30:39:0.462:2	./.
chr22	36598049	rs80587	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,67:32:67:1.00:2	0/1:1,100:33:101:0.990:2	0/1:55,35:33:90:0.389:2	0/1:1,110:32:111:0.991:2	0/1:53,29:33:82:0.354:2	0/1:49,46:31:95:0.484:2	./.
chr22	36598058	rs132736	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,80:32:80:1.00:2	0/1:1,107:31:108:0.991:2	0/1:60,43:32:103:0.417:2	0/1:1,127:32:128:0.992:2	0/1:56,28:32:84:0.333:2	0/1:60,57:32:117:0.487:2	./.
chr22	36598081	rs6000181	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,42:31:88:0.477:2	0/1:69,52:31:121:0.430:2	0/1:68,47:32:115:0.409:2	0/1:76,59:31:135:0.437:2	0/1:72,34:32:106:0.321:2	0/1:72,57:32:129:0.442:2	./.
chr22	36623731	rs132760	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:32:77:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,94:32:95:1.00:2	0/1:0,109:33:109:1.00:2	0/1:0,86:33:86:1.00:2	0/1:0,121:33:121:1.00:2	0/1:0,114:32:114:1.00:2	0/1:0,81:33:81:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,88:32:88:1.00:2
chr22	36624295	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,5:33:103:0.049:2	./.	./.	./.	./.	./.
chr22	36624325	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,5:30:102:0.049:2	./.	./.	./.	./.	./.
chr22	36650956	rs9610468	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,55:30:124:0.444:2	0/1:65,55:29:120:0.458:2	./.	0/1:74,50:31:124:0.403:2	0/1:60,55:29:115:0.478:2	./.
chr22	36655735	rs78188930	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,72:29:145:0.497:2	./.	./.	./.	./.
chr22	36657740	rs41297245	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,112:33:112:1.00:2
chr22	36661330	rs2239785	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,99:31:99:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,90:30:90:1.00:2	0/1:0,66:30:67:1.00:2	0/1:0,109:30:109:1.00:2	0/1:1,78:29:79:0.987:2	0/1:49,53:30:102:0.520:2	0/1:0,92:31:92:1.00:2	0/1:0,80:30:80:1.00:2	0/1:0,139:31:139:1.00:2
chr22	36661536	rs136174	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:32:61:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,95:32:95:1.00:2	0/1:58,47:32:105:0.448:2	0/1:0,112:33:112:1.00:2	0/1:0,69:33:69:1.00:2	0/1:0,83:33:83:1.00:2
chr22	36661566	rs136175	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,45:31:47:0.978:2	0/1:0,40:32:40:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,79:32:79:1.00:2	0/1:46,43:31:89:0.483:2	0/1:0,105:32:105:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,71:32:71:1.00:2
chr22	36661646	rs136176	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:31:45:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,56:32:56:1.00:2	0/1:39,45:31:84:0.536:2	0/1:0,64:32:64:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,59:31:59:1.00:2
chr22	36661842	rs136177	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:32:50:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,64:32:64:1.00:2	0/1:51,35:32:86:0.407:2	0/1:0,66:32:66:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,50:32:50:1.00:2
chr22	36684354	rs2269529	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,31:30:99:0.313:2	./.	0/1:64,43:30:107:0.402:2	0/1:67,33:30:100:0.330:2	./.	0/1:75,48:30:123:0.390:2	0/1:74,41:29:115:0.357:2	./.
chr22	36684358	rs2269530	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,33:32:100:0.330:2	./.	0/1:62,42:31:105:0.404:2	0/1:67,33:32:100:0.330:2	./.	0/1:73,51:32:125:0.411:2	0/1:75,46:30:121:0.380:2	./.
chr22	36684980	rs11549907	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,25:31:62:0.403:2	./.	./.	./.
chr22	36691607	rs710181	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,73:30:73:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,11:28:11:1.00:2	0/1:0,101:29:101:1.00:2	0/1:0,77:30:77:1.00:2	0/1:0,98:30:98:1.00:2	0/1:0,104:29:104:1.00:2	0/1:1,138:30:139:0.993:2	0/1:0,72:30:72:1.00:2	0/1:0,100:30:100:1.00:2	0/1:0,94:30:94:1.00:2
chr22	36691691	rs875725	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,23:32:51:0.451:2	./.	./.	./.
chr22	36700175	rs9619601	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,9:32:19:0.474:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	36715610	rs56001030	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,38:31:80:0.475:2	./.	./.	./.	./.
chr22	36872873	rs150502647	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,66:32:134:0.493:2	./.
chr22	36886095	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:32:52:0.077:2
chr22	36889754	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,6:32:109:0.055:2	./.	./.	./.	./.
chr22	36897427	rs5756223	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:4,38:29:42:0.905:2	0/1:0,25:28:25:1.00:2	./.	./.	./.	./.	./.	0/1:31,26:29:57:0.456:2	./.	./.	./.
chr22	36900271	rs2277841	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,129:32:130:0.992:2	0/1:2,72:32:74:0.973:2	0/1:0,12:33:12:1.00:2	0/1:0,157:33:157:1.00:2	0/1:2,128:33:130:0.985:2	0/1:99,70:33:169:0.414:2	0/1:1,180:33:181:0.994:2	0/1:2,174:33:176:0.989:2	0/1:0,154:33:154:1.00:2	0/1:0,122:33:122:1.00:2	0/1:3,152:33:155:0.981:2
chr22	36900806	rs760718	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,45:32:46:0.978:2	0/1:0,30:32:30:1.00:2	0/1:0,4:32:4:1.00:2	0/1:1,63:32:64:0.984:2	0/1:1,60:31:61:0.984:2	0/1:19,12:29:31:0.387:2	0/1:0,44:32:44:1.00:2	0/1:0,55:32:55:1.00:2	0/1:25,24:32:49:0.490:2	0/1:16,15:33:31:0.484:2	0/1:33,39:32:72:0.542:2
chr22	37163329	rs1048012	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:32:64:1.00:2	0/1:0,23:32:23:1.00:2	0/1:7,7:30:14:0.500:2	0/1:0,98:32:98:1.00:2	0/1:1,82:32:83:0.988:2	0/1:43,44:32:87:0.506:2	0/1:37,36:31:73:0.493:2	0/1:2,91:32:93:0.978:2	0/1:33,37:33:70:0.529:2	0/1:0,52:32:52:1.00:2	0/1:40,27:32:67:0.403:2
chr22	37163414	rs190494362	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,32:32:110:0.291:2	./.	./.	./.	./.
chr22	37196971	rs2001063	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,12:31:41:0.293:2	./.	0/1:1,32:31:33:0.970:2	0/1:25,9:33:34:0.265:2	0/1:34,11:32:45:0.244:2	0/1:12,8:33:20:0.400:2	0/1:10,7:33:17:0.412:2	0/1:24,10:33:34:0.294:2
chr22	37260160	rs200818199	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:92,14:12:106:0.132:2	./.	./.	./.	./.	0/1:50,11:13:61:0.180:2	0/1:55,15:13:70:0.214:2
chr22	37267767	rs2072708	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,54:31:54:1.00:2	0/1:0,30:30:30:1.00:2	0/1:0,7:29:7:1.00:2	0/1:45,32:30:77:0.416:2	0/1:0,34:31:34:1.00:2	0/1:0,80:30:80:1.00:2	0/1:0,25:31:25:1.00:2	0/1:3,36:31:39:0.923:2	0/1:0,39:32:39:1.00:2	0/1:17,20:29:37:0.541:2	0/1:26,12:32:38:0.316:2
chr22	37268257	rs5756374	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:32:38:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,6:31:6:1.00:2	0/1:37,17:32:54:0.315:2	0/1:11,18:30:29:0.621:2	0/1:0,31:31:31:1.00:2	0/1:13,11:28:24:0.458:2	0/1:0,27:31:27:1.00:2	0/1:1,40:31:41:0.976:2	0/1:13,21:32:34:0.618:2	0/1:23,24:32:47:0.511:2
chr22	37271802	rs2072712	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,25:30:52:0.481:2	./.	0/1:36,38:30:74:0.514:2	./.	./.	./.	./.
chr22	37271882	rs2075939	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:28:33:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,14:30:14:1.00:2	0/1:42,31:28:73:0.425:2	0/1:0,80:29:80:1.00:2	0/1:0,77:30:77:1.00:2	0/1:2,91:28:93:0.978:2	0/1:0,90:29:90:1.00:2	0/1:0,51:28:51:1.00:2	0/1:0,66:29:66:1.00:2	0/1:0,43:29:43:1.00:2
chr22	37273742	rs11552115	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,57:31:133:0.429:2	./.	0/1:61,57:32:118:0.483:2	./.	./.	./.	./.
chr22	37319327	rs201476440	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,14:15:130:0.108:2	./.	./.	./.	./.
chr22	37322101	rs61736839	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,54:31:126:0.429:2	./.	./.	./.	0/1:118,77:31:195:0.395:2	./.	./.	./.
chr22	37325833	rs16846	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,66:31:125:0.528:2
chr22	37329999	rs1801117	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,26:29:53:0.491:2	0/1:38,21:29:59:0.356:2	./.	./.	0/1:16,22:29:38:0.579:2	0/1:14,16:30:31:0.533:2	0/1:21,13:29:34:0.382:2
chr22	37333794	rs131840	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,17:30:17:1.00:2	0/1:0,17:31:17:1.00:2	./.	0/1:21,17:32:38:0.447:2	0/1:0,23:28:23:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,18:29:18:1.00:2	0/1:15,12:31:27:0.444:2	0/1:0,13:31:13:1.00:2	0/1:13,6:32:19:0.316:2
chr22	37387257	rs9610624	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,155:33:163:0.951:2	0/1:1,104:32:105:0.990:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	37398195	rs743749	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	0/1:15,32:31:47:0.681:2	0/1:18,25:29:43:0.581:2	./.	0/1:21,9:33:30:0.300:2	./.
chr22	37398201	rs743750	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	./.	./.	0/1:14,32:32:46:0.696:2	0/1:20,24:30:44:0.545:2	./.	0/1:24,10:32:34:0.294:2	./.
chr22	37407194	rs4764	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,111:31:111:1.00:2	0/1:5,79:32:84:0.940:2	./.	./.	./.	./.	./.	0/1:84,111:31:195:0.569:2	./.	./.	./.
chr22	37420533	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.
chr22	37453452	rs710185	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,31:32:32:0.969:2	0/1:1,23:31:24:0.958:2	0/1:0,3:33:3:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,76:31:76:1.00:2	0/1:50,29:31:79:0.367:2	0/1:0,92:32:92:1.00:2	0/1:1,54:32:55:0.982:2	0/1:31,35:33:66:0.530:2	0/1:0,62:32:62:1.00:2	0/1:0,47:32:47:1.00:2
chr22	37458586	rs116956945	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,20:32:32:0.625:2	./.	./.	./.	./.	./.
chr22	37462926	rs2235321	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,74:32:75:0.987:2	0/1:1,80:32:81:0.988:2	0/1:5,6:28:11:0.545:2	0/1:73,74:31:147:0.503:2	0/1:111,83:32:194:0.428:2	0/1:81,78:31:160:0.491:2	0/1:102,90:32:192:0.469:2	0/1:5,181:31:186:0.973:2	./.	0/1:0,106:31:106:1.00:2	0/1:59,42:32:101:0.416:2
chr22	37462936	rs855791	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,75:32:76:0.987:2	0/1:1,77:32:78:0.987:2	0/1:0,9:32:10:1.00:2	0/1:1,142:32:143:0.993:2	0/1:113,77:32:190:0.405:2	0/1:89,76:32:165:0.461:2	0/1:3,176:32:180:0.983:2	0/1:0,179:32:179:1.00:2	0/1:78,70:33:148:0.473:2	0/1:0,105:32:105:1.00:2	0/1:63,48:31:112:0.432:2
chr22	37464696	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,90:32:90:1.00:2	0/1:3,50:32:53:0.943:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	37469591	rs4820268	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:32:68:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,88:32:88:1.00:2	0/1:78,85:31:163:0.521:2	0/1:48,41:31:89:0.461:2	0/1:2,141:32:143:0.986:2	0/1:4,140:32:144:0.972:2	0/1:43,44:33:87:0.506:2	0/1:1,90:31:91:0.989:2	0/1:45,38:32:83:0.458:2
chr22	37480181	rs2543520	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,16:30:48:0.333:2	./.	./.	./.	./.	0/1:35,31:32:67:0.470:2	./.	./.
chr22	37480269	rs2543519	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,17:32:41:0.415:2	./.	./.	./.	./.	0/1:33,36:33:69:0.522:2	./.	./.
chr22	37480797	rs2111833	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,47:30:51:0.979:2	0/1:0,29:28:29:1.00:2	0/1:5,10:28:15:0.667:2	0/1:47,37:27:84:0.440:2	0/1:59,41:29:100:0.410:2	0/1:31,60:29:91:0.659:2	0/1:49,38:28:87:0.437:2	0/1:1,94:29:96:0.989:2	./.	0/1:1,62:29:64:0.984:2	0/1:1,46:28:47:0.979:2
chr22	37485724	rs2235324	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:30:72:1.00:2	0/1:1,65:29:66:0.985:2	0/1:9,5:30:14:0.357:2	0/1:86,55:29:141:0.390:2	0/1:66,27:28:94:0.290:2	0/1:80,51:28:131:0.389:2	0/1:4,68:29:72:0.944:2	0/1:0,104:29:104:1.00:2	./.	0/1:2,76:29:78:0.974:2	0/1:1,56:29:57:0.982:2
chr22	37492100	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:29:73:0.055:2	./.	./.
chr22	37499386	rs11704654	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:1,35:30:36:0.972:2	0/1:0,36:32:37:1.00:2	0/1:5,5:32:10:0.500:2	./.	./.	./.	./.	./.	0/1:22,23:33:45:0.511:2	./.	./.
chr22	37499565	rs115270691	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,31:31:58:0.534:2	0/1:46,42:31:88:0.477:2	./.	./.	./.	./.	0/1:22,8:32:30:0.267:2	0/1:28,20:32:48:0.417:2
chr22	37524619	rs228942	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,32:30:62:0.516:2	./.	./.	./.	./.	./.	./.	./.
chr22	37531436	rs228953	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,8:27:8:1.00:2	0/1:31,19:28:51:0.380:2	./.	./.	0/1:2,57:28:60:0.966:2	0/1:0,78:28:78:1.00:2	./.	./.	0/1:35,21:27:56:0.375:2
chr22	37532441	rs3218297	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,32:32:57:0.561:2	./.	./.	./.
chr22	37539580	rs185863845	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:26:13:0.538:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	37578388	rs17812681	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,10:31:21:0.476:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	37578579	rs229519	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,14:30:37:0.378:2	./.	0/1:0,27:31:27:1.00:2	0/1:17,20:32:37:0.541:2	0/1:0,58:31:58:1.00:2	./.	0/1:0,30:31:30:1.00:2	./.
chr22	37578652	rs17812699	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,15:31:32:0.469:2	./.	0/1:15,17:33:32:0.531:2	./.	./.	./.
chr22	37580442	rs11089827	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,51:32:51:1.00:2	0/1:0,30:32:30:1.00:2	0/1:2,9:30:11:0.818:2	./.	0/1:1,122:31:123:0.992:2	./.	0/1:78,54:32:133:0.409:2	./.	0/1:51,28:31:81:0.354:2	./.	0/1:28,38:30:66:0.576:2
chr22	37581383	rs7290488	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,33:32:73:0.452:2	./.	./.	./.	./.
chr22	37581422	rs229526	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,26:29:26:1.00:2	0/1:0,23:28:23:1.00:2	./.	./.	0/1:35,15:29:50:0.300:2	./.	./.	./.	0/1:27,12:29:39:0.308:2	./.	0/1:20,14:28:34:0.412:2
chr22	37581485	rs229527	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,14:30:14:1.00:2	0/1:0,13:31:13:1.00:2	./.	0/1:16,13:29:29:0.448:2	0/1:15,7:31:22:0.318:2	0/1:11,10:30:21:0.476:2	0/1:18,10:29:28:0.357:2	0/1:14,12:30:26:0.462:2	0/1:17,6:31:23:0.261:2	0/1:0,21:30:21:1.00:2	0/1:12,10:27:22:0.455:2
chr22	37603021	rs2071710	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,20:31:50:0.400:2	./.	0/1:41,38:30:79:0.481:2	0/1:76,47:32:123:0.382:2	0/1:49,39:31:88:0.443:2	./.	0/1:0,55:32:55:1.00:2	./.
chr22	37603051	rs229569	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,15:31:32:0.469:2	./.	0/1:23,25:30:48:0.521:2	0/1:40,22:31:62:0.355:2	0/1:30,19:30:49:0.388:2	./.	0/1:0,28:31:28:1.00:2	./.
chr22	37603390	rs86582	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,19:31:34:0.559:2	./.	0/1:19,18:31:37:0.486:2	0/1:19,25:31:44:0.568:2	0/1:23,25:30:48:0.521:2	./.	0/1:0,20:31:20:1.00:2	./.
chr22	37603496	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:30:97:0.041:2	./.
chr22	37603744	rs86583	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,22:31:40:0.550:2	./.	0/1:18,15:30:33:0.455:2	0/1:17,15:31:32:0.469:2	0/1:30,20:32:50:0.400:2	./.	0/1:0,34:31:34:1.00:2	./.
chr22	37603745	rs4988466	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,18:30:33:0.545:2	./.	0/1:24,27:31:51:0.529:2	./.	./.	./.
chr22	37622815	rs1064498	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,24:31:50:0.480:2	./.	./.	0/1:17,31:32:48:0.646:2	0/1:46,15:32:61:0.246:2	./.	0/1:22,23:32:45:0.511:2	./.
chr22	37637653	rs2239774	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,45:30:129:0.349:2	0/1:97,77:30:174:0.443:2	./.	0/1:119,73:29:192:0.380:2	0/1:104,58:29:162:0.358:2	0/1:65,53:30:118:0.449:2	0/1:58,53:30:111:0.477:2	./.
chr22	37640138	rs200969255	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,25:29:68:0.368:2	./.	./.	./.	./.	./.	./.	./.
chr22	37640202	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,4:31:64:0.063:2	./.	./.
chr22	37678661	rs56262746	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,48:30:111:0.432:2	./.	./.	./.
chr22	37695256	rs2301435	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,8:29:14:0.571:2	0/1:68,38:33:106:0.358:2	0/1:53,28:32:81:0.346:2	0/1:0,58:32:58:1.00:2	0/1:63,38:32:101:0.376:2	0/1:84,19:32:103:0.184:2	0/1:56,32:34:88:0.364:2	0/1:0,48:31:48:1.00:2	0/1:78,25:31:103:0.243:2
chr22	37699377	rs2239822	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,6:29:11:0.545:2	0/1:43,26:29:69:0.377:2	0/1:44,18:31:62:0.290:2	0/1:0,42:29:42:1.00:2	0/1:34,19:29:53:0.358:2	0/1:36,28:28:64:0.438:2	0/1:34,36:30:70:0.514:2	0/1:0,46:29:46:1.00:2	0/1:16,23:28:39:0.590:2
chr22	37707072	rs56378525	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,41:31:75:0.547:2	./.	./.	./.	./.	./.	./.	./.
chr22	37769628	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	37770066	rs8142615	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,10:31:21:0.476:2	0/1:6,7:31:13:0.538:2	0/1:11,8:31:19:0.421:2	./.	0/1:0,17:31:17:1.00:2	0/1:0,18:33:18:1.00:2	./.	./.
chr22	37770357	rs7292751	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,7:31:11:0.636:2	0/1:43,38:29:81:0.469:2	0/1:55,42:30:97:0.433:2	0/1:55,34:30:90:0.382:2	./.	0/1:0,83:30:83:1.00:2	0/1:0,73:31:73:1.00:2	./.	./.
chr22	37770630	rs2071856	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,161:31:162:0.994:2	0/1:0,117:31:117:1.00:2	0/1:30,25:29:55:0.455:2	./.	0/1:112,67:31:179:0.374:2	0/1:102,94:30:196:0.480:2	./.	./.	./.	0/1:3,180:31:183:0.984:2	0/1:2,178:31:180:0.989:2
chr22	37771158	rs2071857	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,11:27:15:0.733:2	0/1:68,50:30:118:0.424:2	0/1:93,69:29:162:0.426:2	0/1:75,58:29:133:0.436:2	0/1:51,49:30:100:0.490:2	0/1:0,98:30:98:1.00:2	0/1:0,96:32:97:1.00:2	./.	./.
chr22	37771985	rs4821653	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,15:32:34:0.441:2	0/1:24,11:31:35:0.314:2	0/1:11,14:31:25:0.560:2	0/1:20,22:30:42:0.524:2	0/1:0,30:31:30:1.00:2	0/1:0,28:31:28:1.00:2	./.	./.
chr22	37887806	rs55875977	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,12:32:39:0.308:2	./.
chr22	37892473	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:27:46:0.087:2
chr22	37900243	rs3817802	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,26:33:63:0.413:2	./.	./.
chr22	37900771	rs3817806	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,57:30:58:0.983:2	0/1:34,25:30:59:0.424:2	./.	./.	0/1:15,30:31:45:0.667:2
chr22	37906262	rs9610775	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:32:6:1.00:2	0/1:0,5:32:5:1.00:2	./.	./.	./.	0/1:5,4:33:9:0.444:2	0/1:5,12:32:17:0.706:2	0/1:13,8:34:21:0.381:2	0/1:4,9:32:13:0.692:2	0/1:7,6:33:13:0.462:2	0/1:5,3:31:8:0.375:2
chr22	37964299	rs2281098	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,12:28:19:0.632:2	./.	0/1:14,3:31:17:0.176:2	0/1:8,12:33:20:0.600:2	./.	0/1:9,17:33:26:0.654:2	0/1:6,11:31:17:0.647:2	./.
chr22	37964382	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,4:30:31:0.129:2	./.	./.	./.
chr22	37966649	rs115686288	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,81:32:195:0.415:2	./.	./.	./.
chr22	38017682	rs138483740	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,57:31:95:0.600:2	./.	./.
chr22	38020986	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:76,4:33:80:0.050:2	./.	./.	./.	./.	./.	./.
chr22	38035851	rs13055139	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,36:33:76:0.474:2	./.	./.	./.	./.	0/1:0,26:31:26:1.00:2
chr22	38039128	rs74516928	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,9:32:19:0.474:2	./.	./.	./.	./.	0/1:0,18:31:18:1.00:2
chr22	38039188	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,3:28:16:0.188:2	./.	./.	./.	./.	./.	./.	./.
chr22	38039708	rs1894529	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,28:33:73:0.384:2	./.	./.	./.	./.	0/1:0,50:32:50:1.00:2
chr22	38041424	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:34:111:0.036:2	./.	./.
chr22	38043444	rs3213528	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:31:3:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,19:30:19:1.00:2	0/1:12,15:29:27:0.556:2	0/1:0,30:30:30:1.00:2	0/1:18,10:30:28:0.357:2	0/1:0,23:31:23:1.00:2	0/1:4,6:30:10:0.600:2	./.
chr22	38044341	rs118183308	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,8:30:36:0.222:2	./.	./.	./.
chr22	38046695	rs12170939	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,35:29:35:1.00:2	./.	./.	./.	0/1:14,27:31:41:0.659:2	./.	./.
chr22	38046718	rs762987	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,17:29:39:0.436:2	./.	./.	./.	./.	0/1:0,27:27:27:1.00:2
chr22	38062112	rs7291867	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,34:28:63:0.540:2	0/1:19,22:28:41:0.537:2	0/1:0,7:31:7:1.00:2	0/1:0,73:29:73:1.00:2	./.	0/1:40,36:28:76:0.474:2	0/1:0,87:29:87:1.00:2	0/1:55,57:28:112:0.509:2	0/1:46,32:29:78:0.410:2	0/1:0,53:29:53:1.00:2	./.
chr22	38062589	rs41283237	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,4:35:109:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	38071707	rs12403	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,22:32:49:0.449:2	./.	./.	./.	./.	0/1:0,36:32:36:1.00:2
chr22	38074343	rs62236672	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,46:27:108:0.430:2	0/1:54,33:29:87:0.379:2	0/1:0,11:30:11:1.00:2	0/1:2,168:28:170:0.988:2	./.	0/1:88,64:28:152:0.421:2	0/1:6,160:28:167:0.964:2	0/1:126,68:28:195:0.351:2	0/1:112,72:28:184:0.391:2	0/1:0,134:27:134:1.00:2	./.
chr22	38074434	rs9622682	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,81:32:162:0.500:2	0/1:61,47:32:108:0.435:2	0/1:0,22:32:22:1.00:2	0/1:1,146:33:147:0.993:2	./.	0/1:1,160:32:161:0.994:2	0/1:2,157:33:159:0.987:2	0/1:97,74:32:171:0.433:2	0/1:83,77:33:160:0.481:2	0/1:0,167:33:167:1.00:2	0/1:0,136:32:136:1.00:2
chr22	38119213	rs12628603	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,40:29:41:0.976:2	0/1:0,10:30:10:1.00:2	0/1:2,5:31:7:0.714:2	./.	0/1:21,18:29:39:0.462:2	0/1:32,32:30:64:0.500:2	./.	./.	0/1:24,24:30:48:0.500:2	0/1:2,35:31:37:0.946:2	0/1:27,16:29:43:0.372:2
chr22	38119859	rs66505048	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,6:25:54:0.111:2	./.	./.	./.	./.	0/1:54,4:27:58:0.069:2	./.	./.	./.	0/1:36,3:32:39:0.077:2	./.
chr22	38119894	rs35105846	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:28:57:0.070:2
chr22	38120006	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,5:30:58:0.086:2	./.	./.	./.	./.	./.	./.
chr22	38120041	rs4821700	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:69,8:30:77:0.104:2	0/1:35,4:32:39:0.103:2	./.	0/1:7,32:26:39:0.821:2	0/1:39,17:29:56:0.304:2	./.	./.	0/1:13,30:31:44:0.698:2	0/1:35,11:32:46:0.239:2	0/1:64,9:30:73:0.123:2	0/1:39,29:30:68:0.426:2
chr22	38120153	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,7:28:109:0.064:2	./.	./.	0/1:115,5:32:120:0.042:2
chr22	38120196	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:83,7:28:90:0.078:2	./.	./.	./.	0/1:85,4:29:89:0.045:2	0/1:79,6:26:85:0.071:2	./.	0/1:118,7:28:125:0.056:2	./.	./.	0/1:127,10:27:137:0.073:2
chr22	38120300	rs58793439	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:94,5:30:99:0.051:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,5:27:76:0.067:2	./.
chr22	38120343	rs71317067	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,4:29:100:0.040:2	./.	./.	./.	./.	./.	./.	./.	0/1:98,5:29:103:0.049:2	./.	./.
chr22	38120429	rs6000868	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:51,4:30:55:0.073:2	0/1:24,4:30:28:0.143:2	./.	0/1:50,7:32:57:0.123:2	./.	0/1:26,4:30:30:0.133:2	./.	0/1:50,4:33:55:0.074:2	./.	0/1:29,4:29:33:0.121:2	0/1:80,5:31:85:0.059:2
chr22	38120668	rs202079450	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,3:32:44:0.068:2	./.
chr22	38120707	rs372618248	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,4:24:22:0.182:2	./.	./.	./.	./.	./.	./.
chr22	38121152	rs9610841	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:2,77:31:79:0.975:2	0/1:0,39:31:39:1.00:2	0/1:11,7:29:18:0.389:2	./.	./.	0/1:49,46:30:95:0.484:2	./.	./.	./.	0/1:62,39:30:101:0.386:2	0/1:49,53:31:102:0.520:2
chr22	38121652	rs193043234	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,49:29:111:0.441:2	./.	./.	./.	./.	0/1:38,28:27:66:0.424:2
chr22	38122122	rs5756795	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,20:32:20:1.00:2	0/1:0,9:33:9:1.00:2	./.	./.	./.	0/1:5,9:31:14:0.643:2	./.	./.	./.	0/1:7,8:33:15:0.533:2	0/1:13,13:31:26:0.500:2
chr22	38122462	rs739138	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.
chr22	38129332	rs7284476	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:2,111:31:113:0.982:2	0/1:0,63:32:64:1.00:2	0/1:9,8:33:17:0.471:2	./.	./.	0/1:60,65:31:125:0.520:2	./.	./.	./.	0/1:55,49:31:104:0.471:2	0/1:51,77:31:128:0.602:2
chr22	38130459	rs8140207	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,79:30:80:0.988:2	0/1:60,46:30:106:0.434:2	./.	./.	0/1:3,83:30:86:0.965:2	0/1:42,39:31:81:0.481:2	./.	0/1:30,42:29:74:0.583:2
chr22	38130472	rs8140958	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:30:47:1.00:2	0/1:0,43:29:43:1.00:2	0/1:9,4:27:13:0.308:2	0/1:0,83:30:83:1.00:2	0/1:0,92:30:92:1.00:2	0/1:53,52:29:105:0.495:2	./.	0/1:0,75:30:75:1.00:2	0/1:0,72:30:72:1.00:2	0/1:0,67:30:67:1.00:2	0/1:0,71:29:71:1.00:2
chr22	38151170	rs11704996	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:46,34:29:80:0.425:2	0/1:28,26:30:54:0.481:2	./.	./.	./.	./.	./.	./.	./.	0/1:49,27:29:76:0.355:2	./.
chr22	38164106	rs4821708	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,77:31:77:1.00:2	0/1:56,58:30:114:0.509:2	./.	./.	0/1:0,101:30:101:1.00:2	0/1:46,46:32:92:0.500:2	./.	0/1:37,25:31:62:0.403:2
chr22	38165269	rs138139146	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:32,23:31:55:0.418:2	./.	./.	./.	./.	./.	./.
chr22	38165290	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:30:29:0.138:2
chr22	38165328	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:30:42:0.095:2	./.	./.	./.	./.
chr22	38202399	rs6000898	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,35:31:35:1.00:2	0/1:15,13:32:28:0.464:2	./.	./.	0/1:2,35:31:38:0.946:2	0/1:13,17:33:30:0.567:2	./.	0/1:16,24:31:40:0.600:2
chr22	38202552	rs1894644	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,49:33:50:1.00:2	0/1:0,34:33:34:1.00:2	./.	0/1:1,68:33:69:0.986:2	0/1:0,60:32:60:1.00:2	./.	./.	0/1:0,59:33:59:1.00:2	0/1:0,89:34:89:1.00:2	0/1:0,76:32:76:1.00:2	0/1:45,47:33:92:0.511:2
chr22	38202642	rs1894645	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,24:30:24:1.00:2	0/1:0,11:29:11:1.00:2	./.	0/1:0,41:29:42:1.00:2	0/1:0,10:28:11:1.00:2	0/1:10,13:28:23:0.565:2	./.	0/1:0,21:29:21:1.00:2	0/1:0,18:30:18:1.00:2	0/1:2,18:29:20:0.900:2	0/1:0,45:28:45:1.00:2
chr22	38202734	rs1894646	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:32:26:1.00:2	0/1:0,19:32:19:1.00:2	0/1:11,4:33:15:0.267:2	0/1:0,43:33:43:1.00:2	0/1:0,23:31:23:1.00:2	./.	./.	0/1:0,30:32:30:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,32:31:32:1.00:2	0/1:52,18:29:70:0.257:2
chr22	38203325	rs15973	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:31:6:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	38204089	rs710187	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,35:32:35:1.00:2	0/1:0,22:32:22:1.00:2	0/1:1,3:30:4:0.750:2	./.	0/1:29,41:31:70:0.586:2	./.	./.	./.	0/1:28,18:32:46:0.391:2	0/1:0,44:32:44:1.00:2	./.
chr22	38205989	rs2285178	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,134:30:137:0.978:2	0/1:93,53:31:146:0.363:2	./.	./.	0/1:0,187:31:187:1.00:2	0/1:80,88:31:168:0.524:2	./.	0/1:57,51:31:108:0.472:2
chr22	38212624	rs17856459	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:32:13:0.538:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	38221141	rs117618411	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,8:30:12:0.667:2	0/1:0,9:28:9:1.00:2	./.	./.	./.	./.
chr22	38251629	rs11551384	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,25:29:59:0.424:2	./.	./.	./.	./.	0/1:50,24:30:74:0.324:2
chr22	38273749	rs9466	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,161:30:161:1.00:2	0/1:73,75:28:148:0.507:2	0/1:89,75:30:164:0.457:2	./.	0/1:5,143:29:148:0.966:2	0/1:97,84:30:181:0.464:2	./.	0/1:1,144:30:145:0.993:2
chr22	38273995	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,5:30:49:0.102:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	38307956	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:110,4:30:114:0.035:2	./.	./.	./.	./.	./.	./.	./.
chr22	38323507	rs9610875	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,17:31:29:0.586:2	./.	./.	./.	./.	0/1:0,32:32:32:1.00:2
chr22	38328597	rs34834842	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,26:30:56:0.464:2	./.	./.	./.	./.	0/1:32,17:30:49:0.347:2
chr22	38340167	rs12158999	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,58:32:111:0.523:2	0/1:26,31:32:57:0.544:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	38341134	rs139859	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,165:29:166:0.994:2	0/1:0,121:29:121:1.00:2	0/1:14,16:30:30:0.533:2	./.	0/1:0,150:29:150:1.00:2	0/1:95,62:29:157:0.395:2	0/1:0,140:29:140:1.00:2	0/1:106,55:28:161:0.342:2	0/1:109,65:29:174:0.374:2	0/1:0,152:30:152:1.00:2	./.
chr22	38369976	rs139884	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,14:28:14:1.00:2	0/1:0,9:28:9:1.00:2	./.	./.	0/1:0,25:25:25:1.00:2	0/1:18,21:27:39:0.538:2	0/1:0,17:25:17:1.00:2	0/1:18,20:28:38:0.526:2	0/1:12,16:29:28:0.571:2	0/1:0,27:28:27:1.00:2	./.
chr22	38461084	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,23:12:178:0.129:2	0/1:146,19:11:165:0.115:2	./.	0/1:124,10:16:135:0.075:2	./.
chr22	38464090	rs117229343	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,24:33:52:0.462:2	./.	./.	./.	./.	./.	./.
chr22	38474696	rs2076371	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,30:31:30:1.00:2	0/1:0,17:29:17:1.00:2	./.	0/1:1,57:30:58:0.983:2	0/1:1,53:31:54:0.981:2	0/1:21,16:28:37:0.432:2	0/1:0,40:31:40:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,41:31:41:1.00:2	0/1:29,17:31:46:0.370:2	./.
chr22	38477342	rs4289289	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	0/1:0,4:26:4:1.00:2	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.
chr22	38477930	rs2235573	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,46:30:49:0.958:2	0/1:0,29:31:29:1.00:2	0/1:7,4:30:11:0.364:2	./.	0/1:0,128:30:129:1.00:2	./.	0/1:0,83:30:84:1.00:2	0/1:78,50:30:128:0.391:2	0/1:72,43:30:115:0.374:2	./.	./.
chr22	38481387	rs142006735	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,44:33:95:0.463:2	0/1:20,23:32:43:0.535:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	38483198	rs200410419	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,5:30:25:0.200:2
chr22	38483204	rs201090429	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,5:31:28:0.179:2
chr22	38503847	rs6001006	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,47:29:47:1.00:2	0/1:35,34:28:69:0.493:2	0/1:1,54:29:55:0.982:2	0/1:1,76:29:78:0.987:2	0/1:38,44:29:82:0.537:2	0/1:0,73:29:73:1.00:2	0/1:0,54:30:54:1.00:2	0/1:0,58:31:58:1.00:2
chr22	38506509	rs4820313	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:32:26:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,2:34:2:1.00:2	0/1:0,43:33:43:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,28:34:28:1.00:2	0/1:0,35:33:35:1.00:2	0/1:0,23:33:23:1.00:2
chr22	38512355	rs55679135	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:31:4:0.750:2	0/1:23,25:32:48:0.521:2	./.	./.	./.	./.	./.	./.	./.
chr22	38512402	rs11089863	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,20:30:50:0.400:2	./.	0/1:2,33:29:35:0.943:2	./.	0/1:36,28:28:64:0.438:2	0/1:26,24:30:50:0.480:2	0/1:0,52:30:52:1.00:2	0/1:27,30:28:57:0.526:2
chr22	38543453	rs2284060	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:64,54:30:118:0.458:2	0/1:26,33:30:59:0.559:2	./.	0/1:102,90:30:192:0.469:2	./.	0/1:3,150:30:153:0.980:2	./.	0/1:104,86:30:190:0.453:2	0/1:0,171:31:171:1.00:2	0/1:0,145:30:145:1.00:2	0/1:82,65:29:147:0.442:2
chr22	38559448	rs731821	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:11,11:31:22:0.500:2	0/1:11,10:32:21:0.476:2	./.	0/1:28,26:32:54:0.481:2	./.	0/1:0,52:30:52:1.00:2	./.	0/1:24,24:32:48:0.500:2	0/1:24,22:31:46:0.478:2	0/1:0,44:32:44:1.00:2	0/1:24,21:30:45:0.467:2
chr22	38563972	rs132988	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,91:33:188:0.484:2	./.	./.	./.	./.	./.	./.
chr22	38611080	rs9610915	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,17:32:35:0.486:2	0/1:10,12:30:22:0.545:2	./.	0/1:38,22:32:60:0.367:2	0/1:29,13:31:42:0.310:2	./.	0/1:0,32:31:32:1.00:2	0/1:42,30:32:72:0.417:2	0/1:43,33:31:76:0.434:2	./.	0/1:22,26:32:48:0.542:2
chr22	38612211	rs4821766	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:28:2:1.00:2	0/1:1,6:31:7:0.857:2	./.	./.	0/1:2,3:32:5:0.600:2	./.	0/1:1,2:34:3:0.667:2	0/1:0,3:31:3:1.00:2	0/1:0,4:31:4:1.00:2	./.	0/1:0,3:32:3:1.00:2
chr22	38612372	rs5995550	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,6:31:8:0.750:2	./.	0/1:0,7:32:7:1.00:2	./.	./.	./.	./.	./.
chr22	38627429	rs117666793	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,27:31:50:0.540:2	./.	./.	./.	./.	./.
chr22	38823136	rs196059	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:30:68:1.00:2	0/1:0,34:31:34:1.00:2	0/1:8,5:33:13:0.385:2	0/1:34,59:32:93:0.634:2	0/1:1,129:31:130:0.992:2	0/1:0,81:31:81:1.00:2	./.	0/1:55,41:31:96:0.427:2	0/1:57,47:30:104:0.452:2	0/1:0,55:31:55:1.00:2	0/1:0,70:30:70:1.00:2
chr22	38823235	rs78901368	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,48:32:88:0.552:2	0/1:28,26:32:54:0.481:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	38877461	rs12004	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:78,61:32:139:0.439:2	0/1:47,17:32:64:0.266:2	./.	0/1:77,60:32:138:0.438:2	0/1:62,71:32:133:0.534:2	0/1:73,57:31:130:0.438:2	./.	0/1:84,71:32:155:0.458:2	0/1:85,69:33:154:0.448:2	./.	0/1:79,65:32:144:0.451:2
chr22	38881979	rs144402360	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,25:29:55:0.455:2	0/1:28,18:29:46:0.391:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	38890721	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:32:172:0.023:2	./.
chr22	38951350	rs370392294	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,28:32:65:0.431:2	0/1:43,22:33:65:0.338:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	38978866	rs115462800	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,47:33:87:0.540:2	0/1:24,30:31:54:0.556:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	39069181	rs3747174	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,21:30:32:0.656:2	0/1:11,8:31:19:0.421:2	./.	./.	0/1:18,8:31:26:0.308:2	0/1:9,14:31:23:0.609:2	./.	0/1:21,15:30:36:0.417:2	0/1:16,21:32:37:0.568:2	./.	0/1:30,14:31:44:0.318:2
chr22	39095935	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:34:153:0.026:2	./.
chr22	39095987	rs2072800	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,56:32:124:0.452:2	0/1:45,46:33:91:0.505:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	39122038	rs16999297	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,34:32:90:0.378:2	0/1:32,22:31:54:0.407:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	39124008	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,8:17:77:0.105:2
chr22	39125529	rs16999301	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,25:31:63:0.397:2	0/1:25,19:32:44:0.432:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	39134207	rs2072797	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:30,22:33:52:0.423:2	0/1:15,17:32:32:0.531:2	./.	./.	./.	./.	./.	0/1:60,48:32:108:0.444:2	./.	./.	./.
chr22	39134715	rs1062687	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,40:33:40:1.00:2	0/1:0,29:32:29:1.00:2	./.	./.	0/1:16,24:32:40:0.600:2	0/1:23,20:33:43:0.465:2	./.	0/1:40,26:33:66:0.394:2	0/1:26,25:33:51:0.490:2	./.	0/1:27,16:32:43:0.372:2
chr22	39134960	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:31:129:0.031:2	./.	./.	./.	./.	./.
chr22	39147235	rs35496634	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:20,19:29:39:0.487:2	0/1:6,9:30:15:0.600:2	./.	./.	./.	./.	./.	0/1:29,43:31:72:0.597:2	./.	./.	./.
chr22	39178701	rs760482	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:14,8:33:22:0.364:2	0/1:91,81:33:172:0.471:2	0/1:98,73:32:171:0.427:2	0/1:2,167:32:169:0.988:2	0/1:108,78:32:186:0.419:2	0/1:106,90:33:196:0.459:2	0/1:94,102:33:196:0.520:2	./.	./.
chr22	39219129	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:31:106:0.038:2	./.	./.
chr22	39222652	rs5757299	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,11:31:20:0.550:2	0/1:43,44:31:87:0.506:2	./.	0/1:0,104:31:104:1.00:2	0/1:43,69:31:112:0.616:2	0/1:0,114:31:114:1.00:2	0/1:46,43:32:89:0.483:2	0/1:40,37:31:77:0.481:2	./.
chr22	39355631	rs142024939	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,27:31:55:0.491:2	0/1:20,13:32:33:0.394:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	39358550	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,10:32:33:0.303:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	39381826	rs2076109	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:39,45:28:84:0.536:2	0/1:34,31:28:65:0.477:2	0/1:8,3:30:11:0.273:2	./.	0/1:58,52:28:111:0.473:2	./.	./.	0/1:0,155:28:155:1.00:2	0/1:0,113:27:113:1.00:2	0/1:71,48:27:119:0.403:2	0/1:51,50:26:102:0.495:2
chr22	39381840	rs17000717	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,45:31:89:0.506:2	0/1:39,37:31:76:0.487:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	39381935	rs59708943	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:86,65:32:151:0.430:2	0/1:53,42:31:95:0.442:2	./.	./.	0/1:104,46:31:150:0.307:2	./.	./.	./.	./.	./.	0/1:82,68:33:150:0.453:2
chr22	39381967	rs17000697	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,23:30:92:0.250:2
chr22	39381999	rs2076111	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,21:28:68:0.309:2	0/1:30,18:31:48:0.375:2	0/1:7,5:29:12:0.417:2	0/1:103,7:27:110:0.064:2	0/1:37,32:28:69:0.464:2	0/1:48,8:29:56:0.143:2	0/1:100,18:28:118:0.153:2	0/1:1,59:28:61:0.983:2	0/1:1,52:29:53:0.981:2	0/1:49,45:27:95:0.479:2	0/1:26,40:26:66:0.606:2
chr22	39382079	rs5995649	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,51:32:52:0.981:2	0/1:0,39:32:39:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,27:32:27:1.00:2	0/1:1,55:32:56:0.982:2	0/1:0,55:31:55:1.00:2	0/1:0,61:32:61:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,66:32:66:1.00:2
chr22	39385575	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:31:119:0.034:2	./.	./.	./.	./.
chr22	39387558	rs1065184	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:24,27:31:51:0.529:2	0/1:21,14:29:35:0.400:2	0/1:3,8:30:11:0.727:2	./.	0/1:41,25:31:66:0.379:2	./.	./.	0/1:32,30:31:62:0.484:2	0/1:0,60:32:60:1.00:2	0/1:50,35:32:85:0.412:2	0/1:24,30:32:54:0.556:2
chr22	39388207	rs5757413	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,8:26:34:0.242:2	0/1:13,6:28:20:0.316:2	./.	./.	./.	./.	./.	./.	0/1:37,5:27:43:0.119:2	./.	./.
chr22	39388216	rs5757414	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:30,8:33:38:0.211:2	0/1:13,6:31:19:0.316:2	./.	./.	./.	./.	./.	./.	0/1:34,6:32:40:0.150:2	./.	./.
chr22	39388486	rs150925968	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,3:33:32:0.094:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	39410414	rs199802868	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,13:30:36:0.361:2	./.	./.	./.	./.	./.
chr22	39421646	rs201653331	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.	./.	./.
chr22	39438949	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:178,13:32:191:0.068:2	./.	./.	./.	./.	./.	./.	./.
chr22	39440149	rs5750728	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,32:31:32:1.00:2	0/1:79,63:31:142:0.444:2	0/1:77,76:32:153:0.497:2	0/1:0,143:31:143:1.00:2	0/1:0,165:32:165:1.00:2	./.	./.	0/1:0,129:32:129:1.00:2	0/1:67,68:31:135:0.504:2
chr22	39440199	rs76919915	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,41:32:81:0.506:2	./.
chr22	39441064	rs201939303	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:135,12:33:147:0.082:2	./.	./.	./.	0/1:118,12:32:130:0.092:2	./.	./.	./.	./.	./.	0/1:145,6:31:151:0.040:2
chr22	39441096	rs2020390	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:94,6:23:100:0.060:2	./.	0/1:0,7:30:7:1.00:2	0/1:65,38:30:103:0.369:2	0/1:69,30:29:99:0.303:2	0/1:1,48:29:49:0.980:2	0/1:5,53:29:58:0.914:2	0/1:117,12:26:129:0.093:2	0/1:114,11:28:125:0.088:2	0/1:0,58:30:58:1.00:2	0/1:78,29:30:107:0.271:2
chr22	39441103	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,12:13:92:0.130:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	39441114	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,15:10:82:0.183:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	39441128	rs35928287	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,11:25:87:0.126:2
chr22	39441203	rs4821862	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,5:31:5:1.00:2	0/1:32,34:30:66:0.515:2	0/1:22,21:31:43:0.488:2	0/1:0,54:30:54:1.00:2	0/1:5,39:31:44:0.886:2	./.	./.	0/1:1,31:32:32:0.969:2	0/1:28,30:31:58:0.517:2
chr22	39445554	rs2076101	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,14:30:14:1.00:2	0/1:52,30:30:83:0.366:2	0/1:18,37:29:55:0.673:2	0/1:0,77:30:77:1.00:2	0/1:1,50:30:51:0.980:2	./.	./.	0/1:0,51:31:51:1.00:2	0/1:35,46:30:81:0.568:2
chr22	39448275	rs12157816	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:33:175:0.023:2	./.	./.	./.
chr22	39474944	rs56033202	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,73:31:160:0.456:2	./.	./.	./.	./.	./.	./.	./.
chr22	39475062	rs201657444	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:60,4:27:64:0.063:2	./.	./.	./.	./.	./.	./.
chr22	39477123	rs5757465	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,3:30:3:1.00:2	0/1:0,70:28:70:1.00:2	0/1:43,24:27:67:0.358:2	0/1:42,31:29:73:0.425:2	0/1:3,38:27:41:0.927:2	0/1:50,34:28:84:0.405:2	./.	./.	0/1:47,29:27:76:0.382:2
chr22	39482371	rs17496046	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,47:30:68:0.691:2	./.	./.	./.	./.	0/1:39,29:31:68:0.426:2	./.
chr22	39483397	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:32:192:0.021:2	./.
chr22	39483419	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:33:185:0.022:2	./.
chr22	39496336	rs139293	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,38:32:83:0.458:2	0/1:27,15:32:42:0.357:2	./.	./.	./.	./.	./.	./.	0/1:1,134:33:135:0.993:2	./.	0/1:67,52:32:119:0.437:2
chr22	39496412	rs139294	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,36:33:36:1.00:2	0/1:0,21:32:21:1.00:2	./.	./.	0/1:13,13:33:26:0.500:2	./.	./.	0/1:31,34:32:65:0.523:2	0/1:0,29:33:29:1.00:2	0/1:14,15:32:29:0.517:2	0/1:30,18:33:48:0.375:2
chr22	39497404	rs139297	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:1,46:28:47:0.979:2	0/1:1,37:28:38:0.974:2	./.	./.	0/1:61,51:26:112:0.455:2	./.	./.	0/1:58,58:27:116:0.500:2	0/1:0,87:28:87:1.00:2	0/1:31,26:29:57:0.456:2	0/1:0,61:27:61:1.00:2
chr22	39497452	rs139298	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,39:31:39:1.00:2	0/1:1,29:32:30:0.967:2	./.	./.	0/1:22,23:31:45:0.511:2	./.	./.	0/1:1,83:32:84:0.988:2	0/1:0,59:32:59:1.00:2	0/1:26,21:32:48:0.447:2	0/1:0,48:32:48:1.00:2
chr22	39497454	rs139299	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,39:27:39:1.00:2	0/1:1,29:27:30:0.967:2	./.	./.	0/1:23,23:27:46:0.500:2	./.	./.	0/1:1,83:28:84:0.988:2	0/1:0,59:27:59:1.00:2	0/1:26,22:26:48:0.458:2	0/1:0,49:27:49:1.00:2
chr22	39497509	rs139300	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,20:32:20:1.00:2	0/1:0,12:31:12:1.00:2	./.	0/1:0,21:32:21:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,24:32:25:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,25:32:25:1.00:2
chr22	39498005	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,7:20:31:0.226:2	./.	./.	./.
chr22	39498015	rs200960035	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,6:18:42:0.143:2
chr22	39498038	rs139302	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:7,11:31:18:0.611:2	0/1:7,9:33:16:0.563:2	./.	./.	0/1:11,24:32:35:0.686:2	./.	./.	0/1:19,11:33:30:0.367:2	0/1:0,35:34:35:1.00:2	0/1:14,13:31:27:0.481:2	0/1:0,41:31:41:1.00:2
chr22	39499653	rs139315	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,96:33:96:1.00:2	0/1:0,48:32:48:1.00:2	./.	./.	0/1:52,38:32:90:0.422:2	./.	./.	0/1:53,71:32:124:0.573:2	0/1:0,101:33:101:1.00:2	0/1:38,39:33:77:0.506:2	0/1:0,95:33:95:1.00:2
chr22	39627639	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	39709009	rs2014842	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,40:31:97:0.412:2	./.	0/1:45,28:31:73:0.384:2	0/1:54,38:31:92:0.413:2
chr22	39710158	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,82:32:173:0.474:2	./.	./.	./.	./.	./.	./.	./.
chr22	39712916	rs146588057	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,40:33:83:0.482:2
chr22	39712936	rs12484030	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,16:31:49:0.327:2	0/1:25,16:32:41:0.390:2	0/1:4,4:31:8:0.500:2	0/1:33,27:31:60:0.450:2	./.	0/1:32,33:29:65:0.508:2	./.	./.	./.	./.	./.
chr22	39712981	rs137623	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,34:31:34:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,10:31:10:1.00:2	0/1:23,20:31:43:0.465:2	0/1:24,17:29:41:0.415:2	0/1:0,38:31:38:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,54:30:54:1.00:2
chr22	39714490	rs6509	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,13:32:37:0.351:2	0/1:9,11:30:20:0.550:2	./.	./.	./.	0/1:30,15:30:46:0.333:2	0/1:7,62:30:69:0.899:2	0/1:51,21:30:72:0.292:2	0/1:0,45:31:45:1.00:2	0/1:22,14:31:36:0.389:2	./.
chr22	39760301	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:32:120:0.033:2	./.	./.	./.	./.
chr22	39770500	rs35429467	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,25:32:59:0.424:2	0/1:18,16:31:34:0.471:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	39770597	rs4821888	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:9,15:32:24:0.625:2	0/1:8,6:32:14:0.429:2	./.	0/1:18,12:31:30:0.400:2	./.	0/1:12,14:32:26:0.538:2	0/1:13,15:31:28:0.536:2	0/1:2,27:32:29:0.931:2	0/1:0,16:34:16:1.00:2	0/1:0,22:33:22:1.00:2	0/1:11,7:33:18:0.389:2
chr22	39771920	rs1297231	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:2,42:33:44:0.955:2	0/1:0,35:32:35:1.00:2	./.	./.	./.	./.	0/1:39,31:32:70:0.443:2	./.	./.	./.	0/1:45,36:33:81:0.444:2
chr22	39795826	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,22:29:94:0.234:2	./.	./.	./.
chr22	39822851	rs36044118	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,19:31:40:0.475:2	0/1:20,11:31:31:0.355:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	39832573	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,4:31:37:0.108:2	./.	./.	./.	./.	./.
chr22	39883564	rs145791006	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,11:29:19:0.579:2	./.	./.	./.
chr22	39883736	rs9623008	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,15:32:18:0.833:2	./.	./.	./.
chr22	39885171	rs73420206	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,21:32:40:0.525:2	0/1:16,12:32:28:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	39885255	rs73420207	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,14:32:24:0.583:2	0/1:10,5:32:15:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	39886217	rs6001605	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,30:28:57:0.526:2	./.	./.	./.	0/1:40,48:29:88:0.545:2
chr22	39886233	rs116662549	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,18:32:45:0.419:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	39887070	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,4:23:22:0.182:2	./.	0/1:30,6:26:36:0.167:2	./.	./.	./.	./.	./.
chr22	39887073	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:25:40:0.100:2	./.	./.
chr22	39887212	rs62230590	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,26:31:48:0.542:2	0/1:9,13:32:22:0.591:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	39887542	rs5995742	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,11:32:11:1.00:2	0/1:1,8:29:9:0.889:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	39887686	rs3827380	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:1,18:28:19:0.947:2	0/1:0,13:26:13:1.00:2	./.	./.	./.	./.	0/1:13,7:26:20:0.350:2	0/1:13,8:27:21:0.381:2	./.	./.	0/1:13,18:29:31:0.581:2
chr22	39907422	rs34686225	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,47:31:106:0.443:2	0/1:28,28:32:56:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	39911354	rs8137469	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,62:33:115:0.539:2	0/1:39,36:32:75:0.480:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	39913557	rs10854722	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,39:31:81:0.481:2	0/1:1,53:31:54:0.981:2	./.	0/1:34,20:31:54:0.370:2	0/1:5,67:31:72:0.931:2	0/1:48,35:33:83:0.422:2	./.	0/1:0,94:32:94:1.00:2
chr22	39917515	rs4894	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,41:30:92:0.446:2	0/1:0,45:30:45:1.00:2	./.	0/1:36,29:31:65:0.446:2	0/1:2,84:31:86:0.977:2	0/1:48,36:31:84:0.429:2	./.	0/1:7,71:30:78:0.910:2
chr22	39917521	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:33:91:0.044:2	./.	./.
chr22	39918141	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,7:31:196:0.036:2	./.	./.	./.
chr22	39966856	rs3747178	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,12:32:24:0.500:2	0/1:2,10:32:12:0.833:2	./.	./.	0/1:24,21:29:45:0.467:2	0/1:20,30:31:50:0.600:2	./.	./.	0/1:10,17:31:27:0.630:2	0/1:0,25:30:25:1.00:2	./.
chr22	39996589	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:33:140:0.029:2	./.	./.
chr22	40015408	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:30:58:0.069:2	./.	./.	./.	./.
chr22	40036947	rs192152982	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,25:31:56:0.446:2	./.	./.	./.	./.
chr22	40042720	rs61623451	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,57:32:103:0.553:2	./.	./.
chr22	40054285	rs141359252	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,58:32:115:0.504:2	0/1:34,34:32:68:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	40054948	rs5757761	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:29:20:1.00:2	0/1:0,10:28:10:1.00:2	0/1:0,6:29:6:1.00:2	0/1:9,5:30:14:0.357:2	0/1:14,5:28:19:0.263:2	0/1:12,7:27:19:0.368:2	./.	./.	./.	0/1:0,16:29:16:1.00:2	0/1:1,11:30:12:0.917:2
chr22	40055768	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,6:30:194:0.031:2	./.	./.	./.	./.
chr22	40055779	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,6:29:193:0.031:2	./.	./.	./.	./.
chr22	40055782	rs143888179	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,6:31:196:0.031:2	./.	./.	./.	./.
chr22	40057273	rs136852	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:28:27:1.00:2	0/1:0,14:28:14:1.00:2	0/1:0,5:30:5:1.00:2	0/1:25,22:29:47:0.468:2	0/1:36,18:29:54:0.333:2	0/1:24,19:30:43:0.442:2	./.	./.	./.	0/1:0,26:29:26:1.00:2	0/1:28,14:31:42:0.333:2
chr22	40066873	rs200593805	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:100,10:26:110:0.091:2	./.	./.	0/1:136,20:12:157:0.128:2	0/1:130,25:11:155:0.161:2	0/1:153,18:12:171:0.105:2	0/1:129,19:12:148:0.128:2	0/1:135,27:12:162:0.167:2	0/1:141,18:12:159:0.113:2	0/1:114,18:16:132:0.136:2	0/1:106,15:15:121:0.124:2
chr22	40066958	rs8141262	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:75,64:32:139:0.460:2	./.	./.	./.	./.	./.	./.	./.
chr22	40364122	rs61752259	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,32:30:80:0.400:2	./.	./.	./.	./.
chr22	40415232	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:31:167:0.024:2	./.	./.	./.	./.	./.
chr22	40415995	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:32:74:0.054:2	./.
chr22	40417780	rs5995793	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,32:30:72:0.444:2	0/1:36,20:29:56:0.357:2	0/1:28,24:31:52:0.462:2	./.	./.	./.	./.
chr22	40417820	rs5995794	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,5:30:12:0.417:2	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.	./.
chr22	40552119	rs9611280	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,61:32:141:0.433:2	./.	./.	./.	./.
chr22	40574170	rs111482025	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,58:31:114:0.509:2	0/1:33,16:30:49:0.327:2	0/1:0,99:30:99:1.00:2	0/1:0,50:31:50:1.00:2	0/1:61,32:31:93:0.344:2	0/1:0,115:31:116:1.00:2	0/1:62,46:30:108:0.426:2	0/1:0,136:31:136:1.00:2
chr22	40657875	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:139,4:32:144:0.028:2	./.	./.	./.	./.	./.	./.
chr22	40661502	rs201057205	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,20:30:65:0.308:2	./.	./.	./.	./.	./.
chr22	40661723	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,4:34:61:0.066:2
chr22	40673999	rs2413621	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,93:31:94:0.989:2	0/1:0,75:32:75:1.00:2	0/1:19,8:31:27:0.296:2	0/1:79,63:32:142:0.444:2	0/1:57,43:31:100:0.430:2	0/1:62,28:31:90:0.311:2	0/1:44,29:31:73:0.397:2	0/1:0,108:31:108:1.00:2	0/1:1,129:32:130:0.992:2	0/1:2,102:32:104:0.981:2	0/1:106,63:32:169:0.373:2
chr22	40742686	rs2228415	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,16:31:38:0.421:2	./.	./.	./.	./.
chr22	40762442	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:31:66:0.061:2	./.	./.	./.
chr22	40803422	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,27:30:63:0.429:2	./.	./.	./.
chr22	40805569	rs74371979	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,35:31:85:0.412:2	./.	./.	./.	./.	./.	./.
chr22	40814500	rs878756	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:40,31:27:71:0.437:2	0/1:13,22:26:35:0.629:2	./.	0/1:36,46:27:82:0.561:2	0/1:36,33:25:69:0.478:2	0/1:0,56:28:56:1.00:2	0/1:2,56:26:58:0.966:2	./.	./.	0/1:35,26:27:61:0.426:2	0/1:0,62:26:62:1.00:2
chr22	40814594	rs56211152	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:3,3:32:6:0.500:2	./.	./.	./.	./.	0/1:9,7:29:16:0.438:2	./.	./.	./.	0/1:2,7:26:9:0.778:2
chr22	40814636	rs4821944	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,6:33:10:0.600:2	./.	./.	0/1:2,6:32:8:0.750:2	0/1:8,5:33:13:0.385:2	./.	0/1:0,4:32:4:1.00:2
chr22	40814931	rs200748590	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,25:32:47:0.532:2	./.	./.	./.	./.	./.
chr22	40815089	rs8135911	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,17:28:33:0.515:2	./.	./.	./.	./.	./.	./.	./.
chr22	40915448	rs150885830	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,82:29:197:0.416:2	./.	./.	./.	./.	0/1:112,80:31:192:0.417:2
chr22	41075532	rs112405400	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,44:28:75:0.587:2	./.	./.	./.	./.	./.	./.	./.
chr22	41075543	rs133072	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,14:31:43:0.326:2	0/1:14,14:31:28:0.500:2	0/1:0,11:30:11:1.00:2	0/1:0,48:31:48:1.00:2	0/1:30,18:30:48:0.375:2	0/1:30,16:29:47:0.348:2	0/1:29,22:30:51:0.431:2	0/1:36,17:31:53:0.321:2	0/1:0,49:31:49:1.00:2	0/1:23,22:31:45:0.489:2	0/1:14,18:31:32:0.563:2
chr22	41075695	rs133073	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,16:32:30:0.533:2	0/1:18,13:30:31:0.419:2	0/1:0,10:31:10:1.00:2	0/1:36,25:31:61:0.410:2	0/1:35,34:31:69:0.493:2	0/1:49,47:30:96:0.490:2	0/1:36,47:31:83:0.566:2	0/1:52,32:31:84:0.381:2	0/1:44,23:32:67:0.343:2	0/1:26,24:32:50:0.480:2	0/1:31,30:30:61:0.492:2
chr22	41077895	rs149604804	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,27:32:46:0.587:2	./.	0/1:35,28:31:64:0.444:2	./.	./.	./.	./.	./.
chr22	41173298	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:32:150:0.027:2	./.	./.	./.
chr22	41175202	rs45608735	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,15:31:46:0.326:2	./.	./.
chr22	41195082	rs117487309	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,67:31:154:0.435:2	./.	./.
chr22	41215183	rs5758092	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,6:31:13:0.462:2
chr22	41223190	rs710193	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,5:30:9:0.556:2	./.	./.	./.	./.
chr22	41240835	rs1573745	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,53:32:95:0.558:2
chr22	41257803	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:66,4:31:70:0.057:2	./.	./.	./.	./.	./.	./.
chr22	41257860	rs35062238	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,4:29:84:0.048:2	./.	./.	./.	./.	./.	./.
chr22	41318365	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,3:29:15:0.200:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	41546158	rs148884710	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,19:30:31:0.613:2	./.	./.	./.	./.	./.	./.	./.
chr22	41548008	rs20551	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,49:32:101:0.485:2	./.	0/1:57,43:31:100:0.430:2	./.	0/1:71,55:32:126:0.437:2	0/1:0,110:32:110:1.00:2	0/1:47,31:32:78:0.397:2	0/1:65,58:32:123:0.472:2
chr22	41551039	rs20552	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:25,27:32:52:0.519:2	0/1:16,12:30:28:0.429:2	0/1:5,3:33:8:0.375:2	0/1:0,56:31:56:1.00:2	./.	0/1:0,52:31:52:1.00:2	0/1:30,23:32:53:0.434:2	0/1:39,34:31:73:0.466:2	0/1:0,78:32:78:1.00:2	0/1:1,40:32:41:0.976:2	0/1:34,33:31:67:0.493:2
chr22	41574300	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:34:95:0.042:2	./.	./.	./.	./.	./.
chr22	41610024	rs139451	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:23,32:31:55:0.582:2	0/1:10,12:32:22:0.545:2	0/1:0,9:31:9:1.00:2	./.	0/1:1,42:30:43:0.977:2	./.	0/1:36,19:30:55:0.345:2	0/1:59,37:32:96:0.385:2	./.	./.	0/1:38,36:31:74:0.486:2
chr22	41613188	rs9611519	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,24:32:41:0.585:2	./.	0/1:14,33:33:47:0.702:2	./.	0/1:13,3:28:16:0.188:2	0/1:0,39:34:39:1.00:2	0/1:10,12:33:22:0.545:2	0/1:10,10:34:20:0.500:2
chr22	41615519	.	G	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,8:18:67:0.119:2	./.	0/1:67,8:20:75:0.107:2	0/1:98,13:19:111:0.117:2	0/1:94,10:20:104:0.096:2	0/1:65,8:22:73:0.110:2	./.	./.
chr22	41617254	rs200870155	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,12:14:117:0.103:2
chr22	41617318	rs139472	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,48:31:93:0.516:2	0/1:25,20:32:45:0.444:2	0/1:0,18:30:18:1.00:2	0/1:84,66:30:150:0.440:2	0/1:0,179:31:179:1.00:2	0/1:69,66:32:135:0.489:2	0/1:109,71:31:180:0.394:2	0/1:2,168:31:170:0.988:2	0/1:1,168:32:169:0.994:2	0/1:66,62:32:128:0.484:2	0/1:2,115:31:117:0.983:2
chr22	41631250	rs9619954	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,13:31:25:0.520:2	0/1:5,3:32:8:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	41631282	rs9619955	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,7:24:20:0.350:2	0/1:3,4:27:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	41635555	rs8135399	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,38:31:76:0.500:2	0/1:18,28:31:46:0.609:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	41645757	rs71948	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,37:32:68:0.544:2	0/1:26,24:32:50:0.480:2	0/1:0,10:32:10:1.00:2	0/1:83,64:32:147:0.435:2	0/1:1,193:31:194:0.995:2	0/1:63,68:31:131:0.519:2	0/1:106,88:32:194:0.454:2	0/1:0,173:32:174:1.00:2	0/1:0,133:32:133:1.00:2	0/1:2,100:32:102:0.980:2	0/1:0,80:32:80:1.00:2
chr22	41652733	rs139509	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	0/1:1,52:29:53:0.981:2	0/1:60,4:30:64:0.063:2	0/1:25,29:30:54:0.537:2	0/1:32,28:31:60:0.467:2	./.	./.	0/1:19,19:31:38:0.500:2
chr22	41652806	rs200265733	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:18:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	41726053	rs4822021	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:25,13:33:38:0.342:2	0/1:7,10:32:17:0.588:2	./.	0/1:26,29:32:55:0.527:2	./.	0/1:30,27:32:57:0.474:2	./.	0/1:25,33:32:58:0.569:2	0/1:28,24:34:52:0.462:2	0/1:0,43:32:43:1.00:2	0/1:21,24:33:45:0.533:2
chr22	41728213	rs141222295	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,54:32:116:0.466:2	./.	./.	./.
chr22	41728239	rs191143984	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,47:31:93:0.505:2	./.	./.	./.	./.	./.	./.	./.
chr22	41739451	rs73416822	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,19:32:51:0.373:2	0/1:19,23:31:42:0.548:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	41752747	rs12484074	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,71:30:135:0.526:2	./.	0/1:97,82:31:179:0.458:2	0/1:60,71:32:131:0.542:2	0/1:0,86:31:86:1.00:2	0/1:29,25:31:54:0.463:2
chr22	41783590	rs148488038	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,28:32:81:0.346:2	0/1:25,21:32:46:0.457:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	41783659	rs11546403	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,32:32:80:0.400:2	./.	0/1:44,42:32:86:0.488:2	0/1:36,26:33:62:0.419:2	0/1:1,64:33:65:0.985:2	0/1:28,17:33:45:0.378:2
chr22	41832561	rs61736465	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:32,26:31:58:0.448:2	0/1:21,24:31:45:0.533:2	./.	0/1:46,37:31:83:0.446:2	./.	./.	./.	./.	./.	./.	./.
chr22	41833116	rs202641	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,26:31:46:0.565:2	0/1:10,10:32:20:0.500:2	0/1:0,8:31:8:1.00:2	0/1:28,35:32:63:0.556:2	0/1:0,56:31:56:1.00:2	0/1:34,12:30:46:0.261:2	0/1:0,52:31:52:1.00:2	0/1:37,34:32:71:0.479:2	0/1:24,34:32:58:0.586:2	./.	0/1:24,25:32:49:0.510:2
chr22	41864190	rs9611597	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,9:29:10:0.900:2	./.	0/1:15,4:30:19:0.211:2	0/1:22,8:30:30:0.267:2	./.	./.	0/1:15,12:30:27:0.444:2
chr22	41865176	rs146048865	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,46:32:105:0.438:2	0/1:35,25:32:60:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	41903813	rs137831	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:31,27:30:58:0.466:2	0/1:28,13:32:41:0.317:2	./.	0/1:63,44:32:107:0.411:2	./.	0/1:44,66:32:110:0.600:2	./.	0/1:57,45:32:102:0.441:2	0/1:54,57:32:111:0.514:2	0/1:0,67:32:67:1.00:2	0/1:21,33:32:54:0.611:2
chr22	41903876	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,28:27:62:0.459:2
chr22	41911497	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:32:68:0.059:2	./.	./.	./.
chr22	41911525	rs1799932	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,21:31:42:0.500:2	0/1:27,12:30:39:0.308:2	0/1:0,6:30:6:1.00:2	0/1:36,14:31:50:0.280:2	0/1:2,50:30:52:0.962:2	./.	0/1:47,23:30:70:0.329:2	0/1:39,23:30:62:0.371:2	0/1:38,20:31:58:0.345:2	./.	0/1:30,20:31:50:0.400:2
chr22	41918878	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,6:32:160:0.038:2	./.	./.	./.
chr22	41918888	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,6:31:153:0.039:2	./.	./.	./.
chr22	41921282	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:130,4:32:134:0.030:2	./.	./.	./.	./.	./.	./.
chr22	41921352	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:107,4:32:111:0.036:2	./.	./.	./.	./.	./.	./.
chr22	41923340	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:29:66:0.061:2	./.	./.
chr22	41970770	rs61743476	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,6:33:124:0.048:2	./.	./.	./.
chr22	41985797	rs143715682	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,14:32:20:0.700:2	./.
chr22	42032122	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:193,6:31:200:0.030:2	./.	./.	0/1:140,4:32:145:0.028:2	./.	./.	./.	./.
chr22	42032159	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,5:32:192:0.026:2	./.	./.	./.	./.
chr22	42032173	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,5:33:183:0.027:2	./.	./.	./.	./.
chr22	42032185	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:177,7:29:184:0.038:2	./.	./.	./.	0/1:168,8:29:176:0.045:2	./.	./.	./.
chr22	42032585	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,5:32:123:0.041:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	42032657	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:33:190:0.021:2	./.	./.	./.	./.
chr22	42059768	rs132788	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,48:31:84:0.571:2	0/1:28,21:31:49:0.429:2	./.	./.	./.	0/1:73,57:31:131:0.438:2	0/1:64,64:31:128:0.500:2	./.	./.	./.	./.
chr22	42089623	rs739134	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,30:29:30:1.00:2	0/1:0,17:29:17:1.00:2	0/1:0,4:30:4:1.00:2	0/1:31,13:29:44:0.295:2	0/1:0,41:29:41:1.00:2	0/1:25,14:29:39:0.359:2	0/1:1,39:30:40:0.975:2	0/1:16,26:29:42:0.619:2	0/1:18,19:29:37:0.514:2	./.	0/1:19,17:28:36:0.472:2
chr22	42092225	rs2187795	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:32:51:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,4:32:4:1.00:2	0/1:21,25:31:46:0.543:2	0/1:0,44:31:44:1.00:2	0/1:26,22:29:48:0.458:2	0/1:0,52:32:52:1.00:2	0/1:34,18:32:52:0.346:2	0/1:34,24:32:58:0.414:2	./.	0/1:33,39:32:72:0.542:2
chr22	42092934	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.	./.	./.
chr22	42159229	rs2050033	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,78:32:78:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,9:33:9:1.00:2	0/1:56,38:32:94:0.404:2	0/1:0,55:31:55:1.00:2	0/1:51,26:32:77:0.338:2	0/1:0,65:32:65:1.00:2	0/1:58,49:32:107:0.458:2	0/1:0,76:33:76:1.00:2	./.	0/1:41,46:33:87:0.529:2
chr22	42174743	rs370619671	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,32:32:80:0.400:2	./.
chr22	42180431	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:31:80:0.050:2	./.	./.	./.
chr22	42189915	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,4:31:60:0.067:2	./.	./.	./.	./.	./.	./.	./.
chr22	42274034	rs9623465	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,31:31:74:0.419:2	0/1:32,20:32:52:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	42276742	rs2228314	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,39:33:96:0.406:2	./.	0/1:58,68:32:126:0.540:2	./.	0/1:70,55:31:125:0.440:2	0/1:64,47:32:111:0.423:2	0/1:37,46:33:83:0.554:2	0/1:51,72:32:123:0.585:2
chr22	42293140	rs2228313	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,21:33:47:0.447:2
chr22	42300710	rs140511856	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,38:31:114:0.333:2	./.	./.	./.	./.	./.	./.	./.
chr22	42335201	rs184253320	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,14:32:52:0.269:2	./.	./.	./.
chr22	42336172	rs5758511	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,17:33:17:1.00:2	./.	./.	./.	0/1:68,64:32:132:0.485:2	0/1:64,77:32:141:0.546:2	0/1:58,58:33:116:0.500:2	./.	./.
chr22	42341308	rs7293091	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,41:32:72:0.569:2	./.	0/1:44,38:31:82:0.463:2	./.	./.	0/1:41,31:33:72:0.431:2	0/1:33,36:32:69:0.522:2	0/1:0,60:32:60:1.00:2
chr22	42341363	rs73165153	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,16:33:34:0.471:2
chr22	42341934	rs35542507	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,51:31:89:0.573:2
chr22	42343091	rs6002555	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,46:32:86:0.535:2	./.	0/1:34,33:31:67:0.493:2	./.	./.	0/1:36,22:32:58:0.379:2	0/1:33,52:31:85:0.612:2	0/1:0,59:31:59:1.00:2
chr22	42382028	rs184455953	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,41:31:93:0.441:2	./.	./.	./.	./.
chr22	42388763	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,43:32:85:0.506:2	./.	./.	./.	./.	./.	./.	./.
chr22	42392985	rs377624563	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,32:31:64:0.500:2
chr22	42416056	rs133335	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,33:32:72:0.458:2	0/1:17,17:32:34:0.500:2	./.	0/1:0,72:32:72:1.00:2	0/1:0,53:32:53:1.00:2	./.	0/1:35,38:31:73:0.521:2	0/1:52,47:31:99:0.475:2	./.	0/1:37,41:33:78:0.526:2	./.
chr22	42423110	rs2301521	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:6,13:30:19:0.684:2	0/1:7,4:30:11:0.364:2	./.	0/1:0,15:31:15:1.00:2	0/1:0,17:31:17:1.00:2	./.	0/1:0,23:29:23:1.00:2	0/1:9,7:28:16:0.438:2	./.	0/1:6,8:30:14:0.571:2	./.
chr22	42428727	rs133349	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:65,38:32:103:0.369:2	0/1:34,20:31:54:0.370:2	./.	0/1:0,123:31:123:1.00:2	0/1:0,76:31:76:1.00:2	./.	0/1:59,26:32:85:0.306:2	0/1:83,52:31:135:0.385:2	./.	0/1:69,36:31:105:0.343:2	./.
chr22	42463814	rs133369	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,23:31:63:0.365:2	0/1:18,9:32:27:0.333:2	0/1:2,7:32:9:0.778:2	0/1:35,54:33:89:0.607:2	0/1:0,129:31:129:1.00:2	./.	0/1:0,123:32:123:1.00:2	0/1:34,52:32:86:0.605:2	./.	0/1:29,25:32:54:0.463:2	./.
chr22	42473603	rs133383	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:20,24:32:44:0.545:2	0/1:18,20:33:38:0.526:2	./.	./.	0/1:0,51:32:51:1.00:2	./.	0/1:12,24:33:36:0.667:2	0/1:18,19:33:37:0.514:2	./.	0/1:10,30:33:40:0.750:2	./.
chr22	42473860	rs1807493	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:17,11:33:28:0.393:2	0/1:7,6:31:13:0.462:2	./.	0/1:18,12:31:30:0.400:2	./.	0/1:1,28:30:29:0.966:2	./.	0/1:24,17:32:42:0.415:2	0/1:22,10:29:32:0.313:2	0/1:19,10:33:29:0.345:2	0/1:0,27:30:27:1.00:2
chr22	42474138	rs1807494	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:85,81:29:166:0.488:2	0/1:50,45:29:95:0.474:2	0/1:8,18:29:26:0.692:2	0/1:3,161:29:164:0.982:2	./.	0/1:2,123:29:125:0.984:2	./.	0/1:100,87:30:188:0.465:2	./.	0/1:88,62:29:150:0.413:2	0/1:0,150:30:150:1.00:2
chr22	42482252	rs113437301	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,49:31:117:0.419:2	./.	./.	./.	./.	./.	./.	./.
chr22	42482276	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.	./.	./.	./.	./.
chr22	42486723	rs1801311	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,29:30:68:0.426:2	0/1:15,17:29:32:0.531:2	0/1:2,7:31:9:0.778:2	0/1:1,85:30:86:0.988:2	./.	0/1:0,97:29:97:1.00:2	./.	0/1:72,46:30:118:0.390:2	0/1:37,51:31:89:0.580:2	0/1:32,37:30:69:0.536:2	0/1:1,58:30:60:0.983:2
chr22	42522613	rs1135840	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:30,35:32:65:0.538:2	0/1:13,12:32:25:0.480:2	./.	./.	0/1:0,74:32:74:1.00:2	./.	0/1:30,46:32:76:0.605:2	0/1:37,50:32:87:0.575:2	0/1:64,31:33:95:0.326:2	0/1:31,37:32:68:0.544:2	./.
chr22	42522751	rs267608319	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,26:31:69:0.382:2	0/1:13,20:31:33:0.606:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	42522965	rs28371732	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,65:32:154:0.422:2	./.	./.	./.	./.	./.	./.
chr22	42523505	rs150552908	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:146,10:31:156:0.064:2	0/1:77,4:32:81:0.049:2	./.	./.	0/1:155,29:32:184:0.158:2	./.	0/1:172,6:32:178:0.034:2	0/1:182,8:31:190:0.042:2	0/1:146,7:33:153:0.046:2	0/1:138,17:31:155:0.110:2	./.
chr22	42523514	rs61745683	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:145,12:32:157:0.076:2	./.	./.	./.	0/1:164,27:31:191:0.141:2	./.	0/1:186,5:32:191:0.026:2	0/1:185,6:32:192:0.031:2	0/1:156,4:33:160:0.025:2	0/1:147,12:32:159:0.075:2	./.
chr22	42523528	rs1058172	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,23:30:44:0.535:2	./.	./.	./.	0/1:137,53:31:190:0.279:2	./.	./.	./.	./.
chr22	42523539	rs28371726	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:33:133:0.030:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,8:31:164:0.049:2	./.
chr22	42523558	rs202102799	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:32:111:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	42523636	rs3915951	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,3:31:15:0.200:2	./.	0/1:131,6:30:137:0.044:2	./.	0/1:126,20:30:146:0.137:2	./.	./.	./.	./.
chr22	42523889	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:34:65:0.062:2
chr22	42523943	rs16947	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:60,48:30:108:0.444:2	0/1:36,37:30:73:0.507:2	0/1:8,11:29:19:0.579:2	./.	0/1:1,148:30:149:0.993:2	./.	0/1:0,175:31:175:1.00:2	0/1:72,81:30:153:0.529:2	0/1:127,65:31:192:0.339:2	0/1:82,45:30:127:0.354:2	./.
chr22	42524795	.	A	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:79,25:32:104:0.240:2	0/1:61,11:31:72:0.153:2	./.	./.	0/1:125,43:29:168:0.256:2	./.	0/1:85,14:32:99:0.141:2	0/1:139,28:31:167:0.168:2	0/1:154,25:33:179:0.140:2	0/1:75,14:31:89:0.157:2	./.
chr22	42524814	rs199535154	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,6:28:198:0.030:2	./.	./.	0/1:148,6:27:154:0.039:2	./.	./.	./.	./.
chr22	42524815	rs150163869	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:192,6:32:198:0.030:2	./.	./.	0/1:148,6:32:154:0.039:2	./.	./.	./.	./.
chr22	42524924	rs111606937	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:95,24:30:119:0.202:2	0/1:81,12:32:93:0.129:2	./.	./.	0/1:122,18:31:140:0.129:2	./.	./.	0/1:92,43:32:135:0.319:2	0/1:151,14:33:167:0.085:2	0/1:125,16:32:142:0.113:2	./.
chr22	42524947	rs3892097	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,10:31:21:0.476:2	./.	./.	./.	0/1:38,28:31:66:0.424:2	./.	./.	./.	./.
chr22	42525089	rs78482768	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,16:34:77:0.208:2	./.	./.	./.	./.	./.	./.	./.
chr22	42525132	rs1058164	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:14,6:33:20:0.300:2	0/1:9,14:32:23:0.609:2	./.	./.	0/1:0,14:30:14:1.00:2	./.	0/1:7,7:32:14:0.500:2	0/1:17,7:32:24:0.292:2	0/1:26,4:25:30:0.133:2	0/1:14,8:31:22:0.364:2	./.
chr22	42526694	rs1065852	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,26:30:42:0.619:2	./.	./.	./.	0/1:44,56:30:100:0.560:2	./.	./.	./.	./.
chr22	42526775	rs72549358	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:124,56:31:180:0.311:2	./.	./.	./.	./.	./.	./.	./.
chr22	42606257	rs2070116	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:43,51:31:95:0.543:2	0/1:16,29:31:45:0.644:2	0/1:1,7:29:8:0.875:2	./.	./.	0/1:46,32:30:78:0.410:2	./.	0/1:55,55:31:110:0.500:2	0/1:57,45:31:102:0.441:2	0/1:35,24:31:60:0.407:2	0/1:47,50:31:97:0.515:2
chr22	42607338	rs17002888	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:67,78:32:145:0.538:2	./.	./.	./.	./.	./.	./.	./.
chr22	42608958	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,35:33:77:0.455:2	0/1:32,15:31:47:0.319:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	42609148	rs5758651	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,13:30:35:0.371:2	0/1:28,10:31:38:0.263:2	./.	./.	./.	./.
chr22	42783019	rs45551335	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:34,39:32:73:0.534:2	./.	0/1:34,39:32:73:0.534:2	./.	./.	./.	./.	./.
chr22	42783070	rs34963472	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:14,10:31:24:0.417:2	0/1:9,13:31:22:0.591:2	./.	./.	0/1:41,37:31:78:0.474:2	./.	./.	./.	./.	./.	./.
chr22	42793873	rs5996153	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:18,19:28:37:0.514:2	0/1:8,11:27:19:0.579:2	./.	./.	0/1:17,20:30:37:0.541:2	./.	./.	./.	./.	./.	./.
chr22	42897745	rs200196187	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,15:31:82:0.183:2	./.	./.
chr22	42901050	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,32:32:189:0.169:2	./.	./.
chr22	42905055	rs56365446	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,29:32:101:0.287:2	./.	./.
chr22	42910760	rs28430278	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:33:179:0.022:2	./.	./.
chr22	42910769	rs4822146	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,44:32:163:0.270:2	./.	./.
chr22	42910784	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:32:107:0.038:2
chr22	42911257	rs1137212	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:25:4:1.00:2	./.	./.
chr22	42912029	rs3201001	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,24:32:44:0.545:2	./.	./.
chr22	42912097	rs11553441	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,21:30:40:0.525:2	./.	./.
chr22	42950004	rs140910717	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,81:28:145:0.559:2	./.	./.	./.	./.	./.	./.	./.
chr22	42951058	rs201849106	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,19:30:88:0.216:2	./.	./.
chr22	42954365	rs182550958	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,32:32:190:0.168:2	./.	./.
chr22	42967195	rs376877472	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,69:32:133:0.519:2	./.	./.	./.	./.	./.
chr22	42967212	rs201123849	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,11:33:95:0.116:2	./.	./.
chr22	42970004	rs147451679	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,15:30:196:0.077:2	./.	./.
chr22	42970042	rs140273337	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,10:27:192:0.052:2	./.	./.
chr22	42981906	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:29:98:0.041:2	./.	./.	./.	./.	./.
chr22	42993781	rs74279208	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,12:27:36:0.333:2	./.	./.	0/1:30,23:32:53:0.434:2	./.	./.
chr22	43023388	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:32:40:0.100:2
chr22	43032742	rs5996200	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,15:29:15:1.00:2	0/1:1,11:28:12:0.917:2	./.	./.	0/1:10,20:29:30:0.667:2	./.	./.	./.	0/1:7,16:30:23:0.696:2	0/1:6,9:29:15:0.600:2	./.
chr22	43088971	rs9623659	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:30:9:0.444:2	0/1:14,22:30:36:0.611:2	0/1:16,33:31:49:0.673:2	0/1:0,76:30:76:1.00:2	0/1:34,29:31:63:0.460:2	0/1:17,40:31:57:0.702:2	0/1:19,36:31:55:0.655:2	0/1:11,14:32:25:0.560:2	0/1:5,23:30:28:0.821:2
chr22	43089055	rs6002904	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:29:9:0.444:2	0/1:0,42:30:42:1.00:2	0/1:45,48:28:93:0.516:2	0/1:2,82:29:84:0.976:2	0/1:49,71:30:120:0.592:2	0/1:1,107:29:108:0.991:2	0/1:39,41:30:80:0.513:2	0/1:28,26:31:54:0.481:2	0/1:16,33:29:49:0.673:2
chr22	43089364	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:33:93:0.043:2	./.	./.
chr22	43089400	rs139550090	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,20:32:46:0.435:2	0/1:22,8:31:30:0.267:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	43089849	rs11541159	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,9:29:15:0.600:2	0/1:39,24:29:63:0.381:2	0/1:61,36:29:97:0.371:2	0/1:0,64:29:64:1.00:2	0/1:33,36:29:69:0.522:2	0/1:52,42:28:94:0.447:2	0/1:49,23:32:72:0.319:2	0/1:28,30:29:58:0.517:2	0/1:29,20:30:49:0.408:2
chr22	43089904	rs374847765	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,31:31:64:0.484:2	./.	./.	./.	./.
chr22	43193641	rs4393836	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:21,24:32:45:0.533:2	0/1:18,14:32:32:0.438:2	./.	./.	./.	./.	./.	0/1:57,27:31:84:0.321:2	./.	0/1:34,35:32:69:0.507:2	./.
chr22	43195147	rs1128013	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,34:30:70:0.486:2	0/1:0,69:30:69:1.00:2	0/1:0,57:30:57:1.00:2	./.	0/1:42,33:31:75:0.440:2	0/1:0,69:32:69:1.00:2	./.	0/1:22,17:31:39:0.436:2
chr22	43203137	rs738535	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,17:33:40:0.425:2	0/1:0,34:32:34:1.00:2	0/1:0,40:31:40:1.00:2	./.	0/1:37,17:32:54:0.315:2	0/1:0,43:33:43:1.00:2	./.	0/1:26,14:32:40:0.350:2
chr22	43206950	rs1018448	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:30,21:32:52:0.412:2	0/1:24,19:33:43:0.442:2	./.	0/1:31,26:32:57:0.456:2	0/1:0,43:29:43:1.00:2	0/1:0,75:30:75:1.00:2	./.	0/1:0,58:30:58:1.00:2	0/1:1,70:31:71:0.986:2	0/1:34,19:31:53:0.358:2	0/1:31,38:31:69:0.551:2
chr22	43253204	rs114765358	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,60:30:120:0.500:2	0/1:27,37:29:64:0.578:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	43278220	rs2899365	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,4:32:65:0.062:2	0/1:0,66:32:66:1.00:2	0/1:3,60:32:63:0.952:2	./.	0/1:45,48:33:93:0.516:2	0/1:0,65:32:65:1.00:2	./.	0/1:29,28:31:58:0.491:2
chr22	43289473	rs5759013	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,11:32:11:1.00:2	0/1:0,21:31:21:1.00:2	./.	./.	0/1:0,10:32:10:1.00:2	./.	0/1:1,5:31:6:0.833:2
chr22	43435812	rs1052163	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,13:32:34:0.382:2	0/1:10,7:32:17:0.412:2	./.	./.	./.	0/1:16,21:32:37:0.568:2	./.	./.	0/1:14,22:33:36:0.611:2	0/1:11,19:32:30:0.633:2	./.
chr22	43455432	rs5759125	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,32:32:72:0.444:2	0/1:18,17:31:35:0.486:2	./.	./.	./.	0/1:72,73:31:145:0.503:2	./.	./.	0/1:49,40:33:89:0.449:2	./.	./.
chr22	43455531	rs1132079	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,6:31:18:0.333:2	./.	0/1:1,132:31:133:0.992:2	./.	./.	0/1:90,68:31:158:0.430:2	0/1:59,50:32:109:0.459:2	./.	./.
chr22	43459846	rs1052160	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,6:30:19:0.316:2	./.	0/1:1,146:29:147:0.993:2	./.	./.	0/1:85,76:30:161:0.472:2	0/1:76,47:31:123:0.382:2	./.	./.
chr22	43459864	rs2272870	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,42:30:112:0.375:2	./.
chr22	43465814	rs2076155	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,22:31:59:0.373:2	./.
chr22	43466217	rs2076156	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,15:30:58:0.259:2	0/1:19,7:31:26:0.269:2	./.	./.	./.	0/1:44,12:31:56:0.214:2	./.	./.	0/1:39,27:32:66:0.409:2	./.	./.
chr22	43466247	rs2076161	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,12:31:48:0.250:2	0/1:14,6:30:20:0.300:2	./.	./.	./.	0/1:22,8:32:30:0.267:2	./.	./.	0/1:24,10:29:34:0.294:2	0/1:15,18:32:33:0.545:2	./.
chr22	43471583	rs79088468	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,10:14:78:0.128:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	43529314	rs13815	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,38:32:39:0.974:2	0/1:0,27:32:27:1.00:2	0/1:6,3:32:9:0.333:2	0/1:23,32:32:55:0.582:2	0/1:23,29:31:52:0.558:2	0/1:28,22:32:50:0.440:2	0/1:0,33:31:33:1.00:2	0/1:1,53:32:54:0.981:2	0/1:1,45:33:46:0.978:2	0/1:0,39:32:39:1.00:2	0/1:0,47:32:47:1.00:2
chr22	43555328	rs376383649	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	43557062	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:33:122:0.033:2
chr22	43558926	rs6971	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:35,15:27:50:0.300:2	0/1:7,5:26:12:0.417:2	./.	0/1:1,31:29:32:0.969:2	0/1:0,19:29:19:1.00:2	0/1:14,23:27:37:0.622:2	0/1:11,13:28:24:0.542:2	0/1:0,19:28:19:1.00:2	0/1:0,34:28:34:1.00:2	0/1:0,11:26:11:1.00:2	0/1:0,13:27:13:1.00:2
chr22	43558972	rs6972	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,25:28:48:0.532:2	./.	0/1:21,27:27:48:0.563:2	./.	0/1:11,17:27:28:0.607:2	0/1:12,33:29:46:0.733:2	./.	0/1:6,11:29:17:0.647:2
chr22	43563209	rs199986176	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,13:30:28:0.464:2
chr22	43568512	rs34074034	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:40,35:31:75:0.467:2	0/1:36,24:31:60:0.400:2	./.	0/1:104,52:31:156:0.333:2	./.	0/1:64,54:30:118:0.458:2	./.	0/1:72,57:32:129:0.442:2	./.	./.	0/1:72,34:32:106:0.321:2
chr22	43572354	rs11704935	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,24:31:57:0.421:2	0/1:15,23:31:38:0.605:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	43575935	rs33970602	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,25:28:60:0.417:2	./.	./.	./.	./.	./.
chr22	43575956	rs142003726	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,9:33:22:0.409:2
chr22	43576880	rs11090144	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:11,19:31:30:0.633:2	0/1:3,11:30:14:0.786:2	./.	./.	./.	./.	./.	0/1:8,13:30:21:0.619:2	./.	./.	./.
chr22	43576904	rs2071723	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,10:30:23:0.435:2	0/1:3,7:26:10:0.700:2	0/1:0,31:30:31:1.00:2	./.	./.	0/1:0,20:31:20:1.00:2	0/1:3,9:30:12:0.750:2	0/1:3,6:32:9:0.667:2
chr22	43579006	rs141712485	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,24:32:84:0.286:2	0/1:37,21:31:58:0.362:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	43579049	rs13058467	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:56,31:31:87:0.356:2	0/1:34,21:31:55:0.382:2	./.	./.	./.	./.	./.	0/1:94,56:31:150:0.373:2	./.	./.	./.
chr22	43579068	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:31:165:0.024:2	./.	./.	./.	./.
chr22	43579083	rs138951	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:43,41:32:84:0.488:2	0/1:31,20:32:51:0.392:2	./.	./.	./.	./.	0/1:67,72:32:139:0.518:2	./.	./.	./.	./.
chr22	43606143	rs5759217	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:14,17:31:32:0.548:2	0/1:12,14:30:26:0.538:2	0/1:0,7:27:7:1.00:2	0/1:0,74:30:75:1.00:2	0/1:1,106:30:107:0.991:2	0/1:48,38:30:86:0.442:2	0/1:43,36:31:79:0.456:2	0/1:39,35:31:74:0.473:2	0/1:0,43:31:43:1.00:2	0/1:0,51:31:51:1.00:2	0/1:15,29:31:45:0.659:2
chr22	43607040	rs138988	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:89,83:31:172:0.483:2	0/1:71,56:32:127:0.441:2	./.	./.	./.	./.	0/1:94,91:30:185:0.492:2	./.	./.	./.	./.
chr22	43608531	rs7284575	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,41:31:65:0.631:2	./.	./.	./.	./.	./.
chr22	43610106	rs34893532	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:31:7:0.571:2	./.	./.	./.	./.	0/1:42,46:32:88:0.523:2	./.	./.	./.
chr22	43610207	rs138993	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,65:32:66:0.985:2	0/1:0,61:32:61:1.00:2	0/1:0,17:32:17:1.00:2	0/1:73,57:32:130:0.438:2	0/1:96,60:32:156:0.385:2	0/1:0,135:33:135:1.00:2	0/1:99,70:32:172:0.414:2	0/1:100,73:32:173:0.422:2	0/1:77,54:33:131:0.412:2	0/1:46,44:33:90:0.489:2	./.
chr22	43614316	rs9620123	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,48:31:100:0.480:2	0/1:41,40:31:81:0.494:2	./.	./.	./.	./.	0/1:41,29:32:70:0.414:2
chr22	43616565	rs111740697	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,36:33:66:0.545:2	0/1:22,15:32:37:0.405:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	43619200	rs6003114	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,7:31:12:0.583:2	0/1:33,14:31:47:0.298:2	0/1:29,22:30:51:0.431:2	0/1:48,16:31:64:0.250:2	./.	0/1:50,28:31:78:0.359:2	0/1:23,27:32:50:0.540:2	0/1:30,14:31:44:0.318:2	./.
chr22	43623395	rs129415	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,20:28:20:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,6:29:6:1.00:2	0/1:28,31:29:59:0.525:2	0/1:18,16:28:34:0.471:2	0/1:0,26:27:26:1.00:2	0/1:8,12:28:20:0.600:2	0/1:0,48:28:48:1.00:2	0/1:24,20:29:44:0.455:2	0/1:0,17:28:17:1.00:2	0/1:0,12:28:12:1.00:2
chr22	43634750	rs57531768	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,35:32:76:0.461:2	0/1:32,12:34:44:0.273:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	43821078	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,22:31:38:0.579:2	./.	./.	./.
chr22	43830996	rs2413761	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,4:28:11:0.364:2	0/1:50,50:27:100:0.500:2	0/1:71,59:27:130:0.454:2	./.	0/1:60,59:27:119:0.496:2	0/1:1,105:28:106:0.991:2	0/1:35,21:29:56:0.375:2	0/1:42,29:29:71:0.408:2	0/1:15,30:28:45:0.667:2
chr22	43831056	rs4331615	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:32:7:0.429:2	0/1:40,23:31:63:0.365:2	0/1:37,31:30:68:0.456:2	./.	0/1:35,38:32:73:0.521:2	0/1:2,75:32:77:0.974:2	0/1:24,27:33:51:0.529:2	0/1:25,25:31:50:0.500:2	0/1:11,26:31:37:0.703:2
chr22	43870629	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:74,7:30:81:0.086:2	0/1:60,5:31:65:0.077:2	./.	0/1:110,5:30:115:0.043:2	0/1:150,5:31:155:0.032:2	0/1:95,6:30:101:0.059:2	0/1:162,4:32:166:0.024:2	0/1:144,4:32:148:0.027:2	0/1:94,9:31:103:0.087:2	./.	0/1:90,6:31:96:0.063:2
chr22	43870650	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,5:30:87:0.057:2	./.	./.	./.	./.	0/1:113,5:28:118:0.042:2	./.	./.	0/1:112,9:27:122:0.074:2	./.	0/1:120,5:26:125:0.040:2
chr22	43870743	rs34665977	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,42:32:91:0.462:2	0/1:31,31:32:62:0.500:2	./.	./.	./.	0/1:2,147:32:149:0.987:2	0/1:95,69:32:164:0.421:2	./.	./.	./.	./.
chr22	43933387	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:34:54:0.074:2	./.	./.
chr22	43936219	rs61995890	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,22:32:48:0.458:2	./.	./.	./.	./.	0/1:33,28:33:61:0.459:2	./.	./.
chr22	43976396	rs9614382	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,109:31:110:1.00:2	0/1:0,80:31:80:1.00:2	0/1:15,13:30:28:0.464:2	0/1:92,99:31:191:0.518:2	0/1:100,69:31:169:0.408:2	0/1:1,194:31:196:0.995:2	0/1:0,160:31:160:1.00:2	0/1:2,189:31:191:0.990:2	0/1:97,94:32:191:0.492:2	0/1:0,167:31:167:1.00:2	0/1:115,76:32:192:0.398:2
chr22	44079645	rs8141450	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,4:30:16:0.250:2	0/1:98,86:30:184:0.467:2	./.	./.	./.	./.	0/1:111,85:30:196:0.434:2	./.	./.
chr22	44079680	rs137794	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,72:31:167:0.431:2	0/1:33,46:31:79:0.582:2	./.	./.	./.	0/1:3,168:30:171:0.982:2	./.	./.	./.	./.	./.
chr22	44083357	rs202185564	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,8:17:61:0.131:2	./.	./.	0/1:54,9:15:63:0.143:2
chr22	44083442	rs5764214	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,8:30:13:0.615:2	0/1:0,75:29:75:1.00:2	0/1:42,13:30:55:0.236:2	./.	./.	0/1:59,31:30:90:0.344:2	0/1:52,44:30:96:0.458:2	./.	0/1:2,87:30:89:0.978:2
chr22	44112832	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:33:58:0.069:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	44112845	rs5764234	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,41:33:65:0.631:2	0/1:26,24:32:50:0.480:2	0/1:2,3:32:5:0.600:2	0/1:0,90:32:90:1.00:2	0/1:22,25:32:47:0.532:2	./.	0/1:15,19:32:34:0.559:2	0/1:41,44:32:85:0.518:2	0/1:0,106:33:106:1.00:2	0/1:42,36:32:78:0.462:2	0/1:0,112:32:112:1.00:2
chr22	44131786	rs3747203	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,6:32:19:0.316:2	./.	0/1:49,63:32:112:0.563:2	./.	0/1:57,51:32:108:0.472:2	0/1:63,56:33:119:0.471:2	./.	./.	./.
chr22	44151656	rs16990981	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,21:29:68:0.309:2	./.	./.	./.	./.	./.	./.	./.
chr22	44178103	rs74957153	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,25:31:66:0.379:2	./.	./.	./.	./.	./.	0/1:69,60:32:129:0.465:2
chr22	44235846	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:27:67:0.060:2	./.
chr22	44282276	rs739231	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:21,10:30:31:0.323:2	0/1:13,6:30:19:0.316:2	./.	./.	0/1:2,37:29:39:0.949:2	./.	0/1:15,20:31:35:0.571:2	0/1:23,33:30:56:0.589:2	./.	0/1:17,9:27:26:0.346:2	0/1:35,24:31:59:0.407:2
chr22	44282307	rs739232	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:13,8:33:21:0.381:2	0/1:9,3:30:12:0.250:2	./.	./.	0/1:2,28:31:30:0.933:2	./.	0/1:15,11:31:26:0.423:2	0/1:23,28:31:51:0.549:2	./.	0/1:17,8:31:25:0.320:2	0/1:33,18:31:51:0.353:2
chr22	44285258	rs62621223	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,42:30:92:0.457:2	./.	./.	./.	./.	./.	./.	./.
chr22	44285312	rs10428037	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:52,47:29:99:0.475:2	./.	./.	./.	./.	./.	./.	./.
chr22	44285667	rs713864	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:38,24:32:62:0.387:2	0/1:41,21:31:62:0.339:2	./.	./.	0/1:0,76:31:76:1.00:2	0/1:51,44:31:95:0.463:2	0/1:56,46:31:102:0.451:2	0/1:51,50:31:101:0.495:2	./.	0/1:46,25:31:71:0.352:2	0/1:45,39:31:84:0.464:2
chr22	44286944	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:30:74:0.054:2	./.	./.	./.
chr22	44287062	rs2071884	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,12:26:28:0.429:2	0/1:11,7:25:18:0.389:2	./.	./.	0/1:0,35:25:35:1.00:2	0/1:44,17:27:61:0.279:2	0/1:18,7:30:25:0.280:2	0/1:27,28:27:55:0.509:2	./.	0/1:11,14:29:25:0.560:2	0/1:13,14:27:27:0.519:2
chr22	44287629	rs74445350	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,5:26:15:0.333:2	./.	./.	./.	./.	./.	0/1:2,6:29:8:0.750:2
chr22	44322922	rs2076213	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,8:30:13:0.615:2	./.	./.	0/1:40,43:29:84:0.518:2	0/1:38,28:29:66:0.424:2	./.	./.	./.	./.
chr22	44322970	rs2076212	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,8:29:13:0.615:2	./.	./.	0/1:41,66:31:107:0.617:2	./.	./.	./.	./.	./.
chr22	44324727	rs738409	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:61,39:32:100:0.390:2	0/1:43,37:32:80:0.463:2	./.	./.	0/1:60,39:32:99:0.394:2	0/1:1,76:33:77:0.987:2	./.	./.	0/1:83,47:33:130:0.362:2	0/1:0,73:33:73:1.00:2	0/1:51,41:33:92:0.446:2
chr22	44324730	rs738408	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:63,39:33:102:0.382:2	0/1:44,37:32:81:0.457:2	./.	./.	0/1:60,38:31:98:0.388:2	0/1:1,76:32:77:0.987:2	./.	./.	0/1:83,47:33:130:0.362:2	0/1:0,73:32:73:1.00:2	0/1:52,41:32:93:0.441:2
chr22	44328832	rs34179073	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,23:30:42:0.548:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	44342116	rs2294918	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:30:65:1.00:2	0/1:0,31:29:31:1.00:2	0/1:2,4:29:6:0.667:2	0/1:51,47:29:98:0.480:2	0/1:0,83:29:83:1.00:2	0/1:1,87:29:88:0.989:2	0/1:42,31:29:73:0.425:2	0/1:52,58:29:110:0.527:2	0/1:0,76:29:76:1.00:2	0/1:1,54:28:55:0.982:2	0/1:58,24:28:82:0.293:2
chr22	44368122	rs3761472	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,23:33:51:0.451:2	0/1:10,8:29:18:0.444:2	./.	./.	./.	./.	./.	./.	0/1:55,16:33:71:0.225:2	0/1:39,19:33:58:0.328:2	./.
chr22	44368204	rs3177036	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,47:32:74:0.635:2	0/1:15,32:33:47:0.681:2	0/1:8,5:32:13:0.385:2	0/1:63,43:33:106:0.406:2	0/1:38,31:31:69:0.449:2	./.	0/1:45,36:33:81:0.444:2	0/1:60,60:33:121:0.500:2	0/1:0,93:33:93:1.00:2	0/1:51,35:32:86:0.407:2	./.
chr22	44372632	rs14315	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:39,26:32:65:0.400:2	0/1:20,17:32:37:0.459:2	./.	0/1:32,27:31:59:0.458:2	./.	./.	0/1:39,32:32:71:0.451:2	0/1:43,35:32:78:0.449:2	0/1:2,77:32:79:0.975:2	0/1:29,34:32:63:0.540:2	./.
chr22	44379822	rs10452	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,55:29:114:0.482:2	0/1:32,26:29:58:0.448:2	0/1:16,10:31:26:0.385:2	0/1:70,67:29:137:0.489:2	0/1:0,126:30:126:1.00:2	0/1:96,59:29:155:0.381:2	0/1:102,65:28:167:0.389:2	0/1:100,64:30:164:0.390:2	0/1:0,129:30:129:1.00:2	0/1:0,117:30:117:1.00:2	0/1:95,75:29:170:0.441:2
chr22	44379838	rs8418	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,95:29:96:0.990:2	0/1:0,56:29:56:1.00:2	0/1:10,5:31:15:0.333:2	0/1:63,58:30:121:0.479:2	0/1:0,102:30:102:1.00:2	0/1:89,50:31:139:0.360:2	0/1:90,49:30:139:0.353:2	0/1:85,58:31:143:0.406:2	0/1:0,119:31:119:1.00:2	0/1:0,109:30:110:1.00:2	0/1:93,64:29:157:0.408:2
chr22	44386281	rs7587	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	0/1:48,40:31:88:0.455:2	./.	./.	./.	./.	./.	./.
chr22	44395451	rs1007863	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,87:31:87:1.00:2	0/1:0,37:29:37:1.00:2	./.	0/1:60,42:30:102:0.412:2	0/1:68,28:30:96:0.292:2	0/1:42,61:30:103:0.592:2	0/1:68,59:30:127:0.465:2	0/1:79,64:30:143:0.448:2	0/1:2,99:31:101:0.980:2	0/1:0,93:30:93:1.00:2	0/1:66,58:30:124:0.468:2
chr22	44489868	rs1983609	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,26:28:26:1.00:2	0/1:0,11:28:11:1.00:2	./.	0/1:38,10:28:48:0.208:2	0/1:0,30:29:30:1.00:2	0/1:42,19:29:61:0.311:2	0/1:0,36:29:36:1.00:2	0/1:32,17:28:49:0.347:2	0/1:28,19:30:47:0.404:2	0/1:0,32:28:32:1.00:2	0/1:1,38:27:39:0.974:2
chr22	44489896	rs738479	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,22:29:22:1.00:2	0/1:0,8:27:8:1.00:2	./.	0/1:32,8:27:40:0.200:2	./.	./.	0/1:13,11:29:24:0.458:2	0/1:19,9:26:28:0.321:2	0/1:16,11:28:27:0.407:2	0/1:0,18:29:18:1.00:2	0/1:19,14:27:33:0.424:2
chr22	44515711	rs742550	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:13,29:31:42:0.690:2	0/1:12,15:31:27:0.556:2	./.	0/1:24,40:31:64:0.625:2	./.	./.	./.	./.	./.	./.	./.
chr22	44532365	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:33:115:0.035:2	./.	./.	./.	./.	./.
chr22	44582499	rs79478	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,76:29:77:0.987:2	0/1:0,37:30:37:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,91:29:91:1.00:2	0/1:2,89:30:91:0.978:2	0/1:0,92:30:92:1.00:2	0/1:2,86:29:88:0.977:2	0/1:83,54:29:137:0.394:2	0/1:0,82:30:83:1.00:2	0/1:0,79:30:79:1.00:2	0/1:0,63:29:63:1.00:2
chr22	44586522	rs2272942	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,16:30:38:0.421:2	0/1:23,22:28:45:0.489:2	./.	0/1:28,14:28:42:0.333:2	0/1:25,38:31:63:0.603:2	0/1:23,22:29:45:0.489:2	0/1:17,13:30:30:0.433:2	./.
chr22	44594584	rs139152	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:43,41:31:84:0.488:2	0/1:30,24:30:54:0.444:2	0/1:8,4:31:12:0.333:2	./.	0/1:32,30:29:62:0.484:2	./.	0/1:23,23:31:46:0.500:2	0/1:51,31:30:82:0.378:2	0/1:2,114:31:116:0.983:2	0/1:51,32:30:83:0.386:2	./.
chr22	44602229	rs139186	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,58:30:59:0.983:2	0/1:0,29:29:29:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,112:30:112:1.00:2	0/1:90,58:30:148:0.392:2	0/1:69,56:30:125:0.448:2	0/1:0,136:30:137:1.00:2	0/1:74,51:31:125:0.408:2	0/1:0,69:31:69:1.00:2	0/1:0,77:30:77:1.00:2	0/1:0,58:30:58:1.00:2
chr22	44681317	rs62226816	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,81:31:197:0.411:2	./.	0/1:73,63:32:136:0.463:2	./.
chr22	44681612	rs135388	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,59:33:60:0.983:2	0/1:0,29:33:29:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,75:33:75:1.00:2	0/1:40,35:32:75:0.467:2	0/1:0,63:33:63:1.00:2	0/1:3,110:32:113:0.973:2	0/1:2,66:33:68:0.971:2	0/1:32,36:34:68:0.529:2	0/1:1,67:33:68:0.985:2	0/1:19,33:33:52:0.635:2
chr22	44761529	rs143763029	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,8:32:22:0.364:2	./.	./.	./.	./.	./.	./.
chr22	44761797	rs5765809	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,7:31:9:0.778:2	0/1:0,92:32:92:1.00:2	0/1:0,78:31:79:1.00:2	./.	./.	0/1:1,137:32:138:0.993:2	0/1:46,62:32:108:0.574:2	./.	0/1:40,52:32:92:0.565:2
chr22	44761832	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,15:33:41:0.366:2	0/1:17,6:32:23:0.261:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	44893563	rs5765689	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,7:33:11:0.636:2	./.	./.	./.	./.	./.	./.
chr22	44893679	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,4:30:13:0.308:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	44965320	rs138593	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:45,46:31:91:0.505:2	0/1:36,32:32:68:0.471:2	0/1:0,19:31:19:1.00:2	./.	0/1:0,75:30:75:1.00:2	0/1:0,123:31:123:1.00:2	0/1:1,110:32:111:0.991:2	0/1:1,116:31:117:0.991:2	0/1:0,108:32:108:1.00:2	0/1:3,73:31:76:0.961:2	0/1:1,141:31:142:0.993:2
chr22	45075738	rs763213	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,43:28:43:1.00:2	0/1:0,30:29:30:1.00:2	./.	0/1:46,26:28:73:0.361:2	0/1:2,51:28:53:0.962:2	0/1:41,27:29:68:0.397:2	0/1:25,44:29:69:0.638:2	0/1:0,106:29:107:1.00:2	0/1:65,47:29:112:0.420:2	./.	0/1:0,89:28:89:1.00:2
chr22	45126775	rs3761485	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,3:34:10:0.300:2	0/1:49,46:32:95:0.484:2	./.	0/1:48,42:32:90:0.467:2	./.	0/1:65,45:32:110:0.409:2	0/1:32,40:33:72:0.556:2	0/1:0,70:32:70:1.00:2	./.
chr22	45126835	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,38:31:80:0.475:2	./.	./.	./.	./.	./.	./.	./.
chr22	45128232	rs8141631	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:28:6:0.500:2	./.	0/1:38,9:28:47:0.191:2	0/1:45,28:28:73:0.384:2	./.	0/1:24,27:28:51:0.529:2	0/1:34,15:27:49:0.306:2	0/1:30,19:29:49:0.388:2	0/1:21,10:29:31:0.323:2
chr22	45132687	rs36082900	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,22:31:40:0.550:2	./.	./.	./.	./.	./.
chr22	45132704	rs6006864	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,5:30:12:0.417:2	./.	./.	./.	0/1:19,8:28:27:0.296:2	./.	./.
chr22	45182416	.	C	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,11:30:114:0.096:2	0/1:80,14:22:94:0.149:2	0/1:108,9:26:117:0.077:2	0/1:78,7:19:85:0.082:2	0/1:121,9:24:130:0.069:2	0/1:94,7:19:101:0.069:2	./.	./.
chr22	45198009	rs2239813	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:13,10:29:23:0.435:2	0/1:107,83:28:190:0.437:2	0/1:99,87:28:187:0.468:2	0/1:67,91:29:158:0.576:2	0/1:104,83:29:191:0.444:2	0/1:115,82:29:198:0.416:2	0/1:63,78:30:142:0.553:2	0/1:57,61:29:118:0.517:2	./.
chr22	45221423	rs3209476	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,5:32:12:0.417:2	0/1:22,18:30:40:0.450:2	0/1:24,18:29:42:0.429:2	./.	0/1:29,15:30:44:0.341:2	./.	./.	./.	./.
chr22	45244930	rs2269543	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:30:8:0.625:2	./.	./.	./.	./.	0/1:31,35:31:66:0.530:2	0/1:0,59:33:59:1.00:2	./.	0/1:36,26:32:62:0.419:2
chr22	45255630	rs61756769	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,14:29:33:0.424:2	0/1:7,4:31:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	45255637	rs6007344	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,15:30:37:0.405:2	0/1:6,6:32:12:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	45258324	rs2071762	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,27:32:65:0.415:2	0/1:14,18:32:32:0.563:2	./.	./.	./.	0/1:29,26:32:55:0.473:2	./.	./.	./.	0/1:35,21:33:56:0.375:2	0/1:38,21:32:59:0.356:2
chr22	45258333	rs9614957	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,37:30:66:0.561:2	0/1:16,18:29:34:0.529:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	45258457	rs8881	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:12,19:29:31:0.613:2	./.	./.
chr22	45283897	rs6006901	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,19:30:37:0.514:2	0/1:18,11:29:29:0.379:2	./.	./.	./.	./.	./.	./.
chr22	45312244	rs6519902	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,5:31:9:0.556:2	0/1:13,15:32:28:0.536:2	0/1:15,24:30:39:0.615:2	./.	./.	./.	./.	./.	./.
chr22	45312345	rs8135982	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.	./.
chr22	45312474	rs138308961	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	45566843	rs132874	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:11,11:34:22:0.500:2	0/1:9,5:31:14:0.357:2	./.	0/1:14,15:32:29:0.517:2	./.	./.	./.	./.	./.	./.	./.
chr22	45566912	rs132875	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:25,21:31:46:0.457:2	0/1:19,12:31:31:0.387:2	./.	0/1:41,26:32:67:0.388:2	./.	./.	./.	./.	./.	./.	./.
chr22	45566924	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:28:54:0.074:2	./.
chr22	45571790	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,27:31:73:0.370:2	./.	./.	./.
chr22	45574145	.	A	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:127,10:28:137:0.073:2	0/1:85,6:22:91:0.066:2	./.	0/1:153,25:27:178:0.140:2	0/1:116,10:28:126:0.079:2	0/1:149,23:28:172:0.134:2	0/1:123,36:28:159:0.226:2	0/1:169,29:29:198:0.146:2	0/1:160,15:28:175:0.086:2	0/1:118,30:27:148:0.203:2	0/1:149,31:25:180:0.172:2
chr22	45574342	.	A	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:133,12:32:145:0.083:2	0/1:82,8:31:90:0.089:2	./.	0/1:113,10:32:123:0.081:2	0/1:115,8:32:123:0.065:2	0/1:126,8:32:134:0.060:2	0/1:119,5:26:124:0.040:2	0/1:112,6:33:118:0.051:2	0/1:111,11:32:122:0.090:2	0/1:106,5:31:111:0.045:2	0/1:121,16:32:137:0.117:2
chr22	45574426	rs199713755	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:120,15:28:135:0.111:2	./.	./.	0/1:152,16:27:168:0.095:2	0/1:123,18:28:141:0.128:2	0/1:167,16:29:183:0.087:2	0/1:148,7:25:155:0.045:2	0/1:126,10:28:136:0.074:2	0/1:146,6:29:152:0.039:2	0/1:91,10:29:102:0.099:2	0/1:141,13:31:154:0.084:2
chr22	45574529	.	A	G	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:178,8:32:186:0.043:2	0/1:140,10:31:150:0.067:2	./.	./.	0/1:167,7:30:174:0.040:2	0/1:172,9:31:181:0.050:2	0/1:169,6:32:175:0.034:2	0/1:182,7:31:189:0.037:2	0/1:169,6:33:175:0.034:2	0/1:185,8:31:193:0.041:2	0/1:172,12:29:184:0.065:2
chr22	45574599	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:154,6:31:160:0.038:2	./.	0/1:186,10:31:196:0.051:2	0/1:185,5:32:190:0.026:2	0/1:186,6:31:192:0.031:2	./.	0/1:188,8:31:196:0.041:2	./.	0/1:189,6:29:195:0.031:2	0/1:179,7:30:186:0.038:2
chr22	45574601	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,5:29:160:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	45574756	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:29:97:0.041:2	0/1:81,5:29:86:0.058:2	./.	./.	./.	./.
chr22	45577231	rs226524	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:32,23:30:55:0.418:2	0/1:31,14:28:45:0.311:2	./.	0/1:37,24:29:61:0.393:2	./.	./.	./.	./.	./.	./.	./.
chr22	45580350	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,8:31:193:0.041:2	./.	./.	./.	./.	./.
chr22	45593055	rs3179803	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,25:30:46:0.543:2	0/1:25,31:31:56:0.554:2	./.	./.	./.	./.	./.	./.
chr22	45603631	rs5766539	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,46:32:122:0.377:2	0/1:68,59:33:127:0.465:2	./.	./.	./.	./.	./.	./.
chr22	45603638	rs11703323	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:34:7:0.429:2	./.	./.	./.	0/1:89,39:33:129:0.305:2	./.	./.	./.	./.
chr22	45608136	rs192168043	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,28:32:63:0.444:2	./.	./.	./.	./.
chr22	45609222	rs181115490	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:32:47:0.085:2	./.	./.	./.	./.	./.
chr22	45683246	rs2673088	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,41:30:41:1.00:2	0/1:0,21:31:21:1.00:2	./.	0/1:1,82:28:83:0.988:2	0/1:70,23:27:93:0.247:2	0/1:0,82:28:82:1.00:2	0/1:51,27:27:78:0.346:2	0/1:0,71:28:71:1.00:2	0/1:38,16:29:54:0.296:2	0/1:44,19:29:63:0.302:2	0/1:0,39:29:39:1.00:2
chr22	45683304	rs1057353	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,19:29:20:0.950:2	0/1:0,14:31:14:1.00:2	./.	0/1:0,32:30:32:1.00:2	0/1:33,14:31:47:0.298:2	0/1:0,42:31:42:1.00:2	0/1:26,19:32:45:0.422:2	0/1:0,34:31:34:1.00:2	0/1:19,22:30:41:0.537:2	0/1:21,8:28:29:0.276:2	0/1:0,23:30:23:1.00:2
chr22	45685002	rs1135360	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:24,8:30:32:0.250:2	0/1:4,10:30:14:0.714:2	0/1:0,3:30:3:1.00:2	0/1:22,25:29:47:0.532:2	0/1:31,27:30:58:0.466:2	./.	0/1:0,25:29:25:1.00:2	0/1:32,27:31:59:0.458:2	0/1:20,11:32:31:0.355:2	0/1:27,14:30:41:0.341:2	0/1:14,12:27:26:0.462:2
chr22	45691594	rs1057356	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:23,6:32:29:0.207:2	0/1:27,11:32:38:0.289:2	./.	./.	0/1:19,17:35:36:0.472:2	0/1:15,6:32:21:0.286:2	0/1:11,8:29:19:0.421:2
chr22	45718041	rs1473953	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,19:34:28:0.679:2	./.	0/1:81,75:32:157:0.481:2	0/1:86,61:33:147:0.415:2	./.	0/1:102,91:33:194:0.472:2	./.	0/1:78,53:33:131:0.405:2	0/1:96,80:33:176:0.455:2
chr22	45723807	rs11556482	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,8:33:13:0.615:2	./.	0/1:78,53:33:131:0.405:2	0/1:62,49:32:111:0.441:2	./.	0/1:67,52:32:119:0.437:2	./.	0/1:31,32:33:63:0.508:2	0/1:49,60:33:109:0.550:2
chr22	45723813	rs151076236	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,69:32:113:0.611:2	./.	./.
chr22	45723842	rs17851057	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,6:30:12:0.500:2	./.	0/1:61,49:33:110:0.445:2	0/1:45,48:32:93:0.516:2	./.	0/1:66,53:32:119:0.445:2	./.	0/1:31,36:32:67:0.537:2	0/1:40,48:32:88:0.545:2
chr22	45723854	rs9615108	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,43:32:44:0.977:2	0/1:0,20:32:20:1.00:2	0/1:7,4:32:11:0.364:2	0/1:2,90:32:92:0.978:2	0/1:56,57:31:113:0.504:2	./.	0/1:1,80:31:81:0.988:2	0/1:54,56:32:110:0.509:2	0/1:0,68:33:69:1.00:2	0/1:35,26:32:61:0.426:2	./.
chr22	45723898	rs62001863	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:33,4:27:37:0.108:2	0/1:16,3:31:19:0.158:2	./.	0/1:58,6:32:64:0.094:2	0/1:67,4:30:71:0.056:2	./.	0/1:40,9:32:49:0.184:2	./.	0/1:35,6:33:41:0.146:2	./.	./.
chr22	45723920	rs111386114	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:22,10:30:32:0.313:2	0/1:15,6:27:21:0.286:2	./.	0/1:37,8:32:45:0.178:2	./.	./.	0/1:39,6:31:45:0.133:2	./.	0/1:29,7:32:36:0.194:2	./.	./.
chr22	45728370	rs6007594	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,6:31:18:0.333:2	./.	0/1:26,37:31:63:0.587:2	0/1:65,51:31:116:0.440:2	./.	0/1:74,44:32:118:0.373:2	./.	0/1:66,37:33:103:0.359:2	0/1:79,78:31:157:0.497:2
chr22	45748339	rs5765275	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,36:28:36:1.00:2	0/1:0,28:28:28:1.00:2	./.	0/1:0,48:29:48:1.00:2	0/1:23,16:30:39:0.410:2	./.	./.	./.	0/1:2,60:29:62:0.968:2	0/1:31,18:28:49:0.367:2	./.
chr22	45749966	rs61735519	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	0/1:41,46:33:87:0.529:2	./.
chr22	45749983	rs5764698	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,54:32:54:1.00:2	0/1:1,31:30:33:0.969:2	./.	0/1:0,83:31:83:1.00:2	0/1:43,32:31:75:0.427:2	./.	./.	./.	0/1:2,75:32:77:0.974:2	0/1:43,38:32:81:0.469:2	./.
chr22	45767369	rs470062	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,83:32:163:0.509:2	./.	./.	./.	./.	0/1:72,91:32:163:0.558:2
chr22	45767391	rs9614653	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,49:31:113:0.434:2	./.	./.	0/1:181,5:33:186:0.027:2	./.	./.	./.
chr22	45767421	rs56174639	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,60:30:142:0.423:2	0/1:2,60:31:62:0.968:2	0/1:3,138:31:141:0.979:2	./.	./.	0/1:91,55:31:146:0.377:2
chr22	45767455	rs136569	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:31:12:0.583:2	./.	0/1:33,18:33:51:0.353:2	0/1:1,73:32:74:0.986:2	0/1:1,31:33:32:0.969:2	0/1:0,71:32:71:1.00:2	./.	0/1:38,41:33:79:0.519:2	0/1:0,89:32:90:1.00:2
chr22	45782903	rs6007010	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,4:31:11:0.364:2	./.	0/1:36,30:32:66:0.455:2	0/1:60,44:33:104:0.423:2	0/1:1,64:32:65:0.985:2	0/1:0,95:33:95:1.00:2	./.	0/1:52,39:33:91:0.429:2	0/1:77,54:32:131:0.412:2
chr22	45789642	rs136603	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,86:32:86:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,66:33:66:1.00:2	0/1:0,87:33:87:1.00:2	0/1:0,79:33:79:1.00:2	0/1:0,119:33:119:1.00:2
chr22	45813682	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:84,5:28:89:0.056:2	./.	./.	0/1:55,6:30:61:0.098:2	./.	./.	./.	./.
chr22	45813687	rs12172195	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,24:31:65:0.369:2	./.	./.	./.	./.	0/1:36,29:31:65:0.446:2	./.
chr22	45813689	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,5:26:63:0.079:2	./.	./.	./.	./.
chr22	45821887	rs1022477	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.	0/1:14,16:31:30:0.533:2	0/1:0,68:31:68:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,56:31:56:1.00:2	./.	0/1:20,17:32:37:0.459:2	0/1:1,61:32:62:0.984:2
chr22	45821909	rs2142661	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:31:7:0.571:2	./.	0/1:9,12:32:21:0.571:2	./.	./.	./.	./.	0/1:14,17:32:31:0.548:2	./.
chr22	45821935	rs2142662	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,7:32:9:0.778:2	./.	0/1:9,9:30:18:0.500:2	./.	./.	./.	./.	0/1:12,10:32:22:0.455:2	./.
chr22	45821956	rs1022478	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,33:30:33:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,39:32:39:1.00:2	./.	./.	0/1:0,36:30:36:1.00:2
chr22	45826880	rs2072770	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:32:5:0.600:2	./.	0/1:19,36:31:55:0.655:2	0/1:0,56:29:56:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,40:32:40:1.00:2	./.	0/1:13,22:32:35:0.629:2	0/1:0,19:31:19:1.00:2
chr22	45898117	rs3810633	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:8,3:32:11:0.273:2	./.	0/1:0,15:31:15:1.00:2	0/1:9,6:31:15:0.400:2	0/1:9,9:33:18:0.500:2	./.	0/1:7,3:32:10:0.300:2	0/1:15,3:36:18:0.167:2	0/1:0,5:33:5:1.00:2	0/1:10,5:32:15:0.333:2
chr22	45898130	rs3810634	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:7,4:32:11:0.364:2	./.	0/1:0,15:31:15:1.00:2	0/1:10,6:31:16:0.375:2	0/1:8,7:31:15:0.467:2	./.	0/1:6,3:29:9:0.333:2	0/1:13,4:33:17:0.235:2	0/1:0,7:32:7:1.00:2	0/1:11,5:31:16:0.313:2
chr22	45923827	rs136730	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,36:29:36:1.00:2	0/1:0,22:29:22:1.00:2	0/1:0,7:28:7:1.00:2	0/1:0,46:29:46:1.00:2	0/1:0,51:29:52:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,32:30:32:1.00:2	0/1:0,59:29:59:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,48:29:48:1.00:2	0/1:0,72:30:72:1.00:2
chr22	45927220	rs6006768	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:9,8:32:17:0.471:2	./.	./.	./.	./.	./.	./.
chr22	45937149	rs9682	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:77,65:33:142:0.458:2	0/1:41,49:32:90:0.544:2	./.	0/1:76,93:31:170:0.550:2	0/1:73,93:32:166:0.560:2	0/1:83,89:31:172:0.517:2	0/1:2,183:32:185:0.989:2	./.	0/1:1,180:33:181:0.994:2	./.	./.
chr22	45958897	rs138959755	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:16,9:31:25:0.360:2	./.	./.	./.	./.	./.	./.
chr22	46202925	rs3827398	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,51:29:97:0.526:2	0/1:53,45:29:98:0.459:2
chr22	46219069	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,37:31:79:0.468:2	./.	./.	./.
chr22	46323480	rs117905397	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,22:32:43:0.512:2	./.	./.	./.	./.	./.	./.
chr22	46449891	rs12159707	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.
chr22	46493852	rs3747243	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,11:32:21:0.524:2	0/1:12,12:31:24:0.500:2	./.	./.	./.	0/1:27,24:31:51:0.471:2	0/1:31,28:31:59:0.475:2	./.	0/1:23,21:33:44:0.477:2	0/1:26,20:30:46:0.435:2	./.
chr22	46499120	rs9616125	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:22,21:32:43:0.488:2	0/1:10,9:32:19:0.474:2	0/1:1,2:33:3:0.667:2	./.	0/1:29,12:31:41:0.293:2	0/1:19,37:32:56:0.661:2	./.	./.	0/1:23,25:32:48:0.521:2	0/1:22,26:32:48:0.542:2	./.
chr22	46501355	rs8139990	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:53,61:32:114:0.535:2	0/1:55,45:32:100:0.450:2	0/1:14,16:32:30:0.533:2	./.	0/1:42,33:30:75:0.440:2	0/1:52,51:30:103:0.495:2	./.	./.	0/1:51,61:31:112:0.545:2	0/1:51,46:30:97:0.474:2	./.
chr22	46501373	rs12159652	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,8:31:16:0.500:2	./.	0/1:35,28:28:63:0.444:2	0/1:52,45:30:97:0.464:2	./.	./.	0/1:49,62:31:111:0.559:2	0/1:49,40:30:89:0.449:2	./.
chr22	46501426	rs6008215	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:34:15:0.400:2	./.	0/1:29,29:32:58:0.500:2	0/1:44,33:32:77:0.429:2	./.	./.	0/1:27,42:33:69:0.609:2	0/1:36,15:33:51:0.294:2	./.
chr22	46505652	rs58819475	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,17:27:53:0.321:2	./.	./.	./.	./.	./.	./.
chr22	46505780	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:31:111:0.036:2	./.	./.	./.	./.
chr22	46505786	rs61195212	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,46:29:82:0.561:2	./.	./.	./.	./.	./.	./.
chr22	46505819	rs62225901	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,25:31:51:0.490:2	./.	./.	./.	./.	./.	./.
chr22	46644168	rs9627281	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:25,19:33:44:0.432:2	./.	./.	./.	0/1:35,24:34:59:0.407:2	./.	./.
chr22	46652605	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:33:197:0.020:2	./.	./.	./.	./.
chr22	46652737	rs6008362	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,40:31:87:0.460:2	./.	./.	./.	0/1:39,46:33:85:0.541:2	./.	./.
chr22	46652929	rs6008365	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	0/1:27,21:32:48:0.438:2	./.	./.	./.	0/1:18,25:33:43:0.581:2	./.	./.
chr22	46652959	rs4508712	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:18,10:33:28:0.357:2	0/1:20,13:30:33:0.394:2	0/1:0,7:31:7:1.00:2	./.	0/1:24,10:28:34:0.294:2	./.	./.	./.	0/1:17,11:31:28:0.393:2	./.	./.
chr22	46653508	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:33:105:0.039:2	./.	./.	./.	./.	./.
chr22	46654159	rs147904316	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,49:33:128:0.383:2
chr22	46654323	rs6007740	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	0/1:19,22:30:41:0.537:2	./.	./.	./.	0/1:20,31:32:51:0.608:2	./.	./.
chr22	46655344	rs34287403	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,67:30:146:0.462:2	./.	./.	./.	./.	./.
chr22	46655779	rs36125344	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,25:32:39:0.641:2	./.	./.	./.	0/1:15,16:33:31:0.516:2	./.	./.
chr22	46655948	rs6008384	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,40:32:75:0.533:2	./.	./.	./.	0/1:53,65:33:118:0.551:2	./.	./.
chr22	46656246	rs7291444	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,12:32:24:0.500:2	./.	0/1:89,73:31:162:0.451:2	./.	./.	./.	0/1:88,69:33:157:0.439:2	./.	./.
chr22	46656304	rs56301018	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:87,74:30:161:0.460:2	./.	./.	./.	./.	./.	./.	./.
chr22	46656479	rs6519993	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:17,12:32:29:0.414:2	./.	./.	./.	0/1:23,24:33:47:0.511:2	./.	./.
chr22	46656511	rs9627324	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:33:8:0.375:2	./.	0/1:23,17:32:40:0.425:2	./.	./.	./.	0/1:34,28:34:62:0.452:2	./.	./.
chr22	46656607	rs8143066	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,15:30:42:0.357:2	./.	./.	./.	0/1:54,40:32:94:0.426:2	./.	./.
chr22	46656805	rs6519994	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,7:31:12:0.583:2	./.	0/1:49,24:31:73:0.329:2	./.	0/1:93,5:32:98:0.051:2	./.	0/1:92,55:33:147:0.374:2	./.	./.
chr22	46657261	rs6007747	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:35:3:1.00:2	./.	0/1:9,12:30:21:0.571:2	./.	./.	./.	0/1:8,5:31:13:0.385:2	./.	./.
chr22	46657798	rs6007748	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,5:32:6:0.833:2	./.	0/1:18,19:30:37:0.514:2	./.	./.	./.	0/1:19,19:32:38:0.500:2	./.	./.
chr22	46658010	rs370809744	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,47:31:88:0.534:2	./.	./.	./.	./.	./.	./.	./.
chr22	46658314	rs141932530	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,13:29:28:0.464:2
chr22	46658551	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,4:32:109:0.037:2	./.	./.	./.	./.	./.	./.
chr22	46664431	rs9627359	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,8:32:20:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	46665091	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,4:29:46:0.087:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	46677607	rs130642	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:33:40:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,3:33:3:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,39:34:39:1.00:2	0/1:0,45:33:45:1.00:2	0/1:0,54:33:54:1.00:2
chr22	46677904	rs6008495	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:30:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	46679851	rs6008505	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,7:27:10:0.700:2	./.	./.	./.	./.	./.	./.
chr22	46681173	rs34834410	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,8:27:18:0.444:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	46682976	rs55653327	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,52:30:88:0.591:2	./.	./.	./.	0/1:25,17:32:42:0.405:2	./.	./.
chr22	46685375	rs56340734	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,30:29:46:0.652:2	./.	./.	./.	./.	./.	./.	./.
chr22	46685380	rs11705624	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,14:31:24:0.583:2	./.	./.	./.	0/1:26,23:31:49:0.469:2	./.	./.
chr22	46685754	rs182313981	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,61:31:133:0.459:2	./.	./.	./.	./.	./.
chr22	46704243	rs6008598	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,7:31:15:0.467:2	./.	./.	./.	0/1:12,6:32:18:0.333:2	./.	./.
chr22	46704326	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:30:82:0.049:2
chr22	46709881	rs6008622	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:10,28:30:38:0.737:2	./.	./.	./.	0/1:19,19:32:38:0.500:2	./.	./.
chr22	46712008	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,5:21:50:0.100:2	./.
chr22	46712077	rs9615947	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,15:29:26:0.577:2	./.	./.	./.	0/1:9,24:31:33:0.727:2	./.	./.
chr22	46719100	rs6008684	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,64:32:145:0.441:2	./.	0/1:90,64:33:154:0.416:2	./.	0/1:85,66:34:151:0.437:2	./.	./.
chr22	46722397	rs77719017	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:30:11:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	46722400	rs140054	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,41:28:41:1.00:2	0/1:0,26:28:26:1.00:2	0/1:1,9:28:10:0.900:2	0/1:0,66:26:66:1.00:2	0/1:48,21:25:69:0.304:2	0/1:0,52:27:52:1.00:2	0/1:0,53:27:53:1.00:2	0/1:40,36:27:76:0.474:2	0/1:0,39:27:39:1.00:2	0/1:0,28:27:28:1.00:2	0/1:21,16:25:37:0.432:2
chr22	46722531	rs9615949	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:19,18:32:37:0.486:2	./.	./.	./.	0/1:34,16:32:50:0.320:2	./.	./.
chr22	46731689	rs11090865	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,5:29:6:0.833:2	./.	./.	./.	0/1:2,6:30:8:0.750:2	./.	./.
chr22	46749755	rs61737827	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,19:31:38:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	46751394	rs9627420	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,7:30:9:0.778:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	46751472	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,55:32:112:0.491:2	./.	./.
chr22	46759997	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:32:74:0.054:2	./.	./.	./.
chr22	46760086	rs35364389	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:6,6:31:12:0.500:2	0/1:1,2:32:3:0.667:2	./.	./.	0/1:3,8:32:11:0.727:2	./.	./.	./.	0/1:2,5:30:7:0.714:2	./.	./.
chr22	46760481	rs9615351	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:28,12:32:40:0.300:2	0/1:10,9:33:19:0.474:2	./.	0/1:0,36:30:36:1.00:2	0/1:19,17:30:36:0.472:2	./.	0/1:17,11:31:28:0.393:2	./.	0/1:23,19:32:42:0.452:2	./.	./.
chr22	46760490	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,4:31:21:0.190:2
chr22	46761497	rs12165943	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,13:32:40:0.325:2	0/1:6,10:32:16:0.625:2	0/1:2,4:33:6:0.667:2	0/1:0,55:32:55:1.00:2	0/1:31,13:31:44:0.295:2	./.	0/1:23,15:29:38:0.395:2	./.	0/1:34,31:33:65:0.477:2	./.	./.
chr22	46763671	rs7285515	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:62,56:29:118:0.475:2	0/1:28,23:28:51:0.451:2	0/1:14,9:28:23:0.391:2	./.	./.	./.	0/1:112,78:29:191:0.411:2	./.	./.	./.	./.
chr22	46777880	rs35315552	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:33:4:1.00:2	./.
chr22	46780521	rs6007897	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,30:30:30:1.00:2	0/1:19,12:28:31:0.387:2	./.	./.	./.	./.	./.	./.
chr22	46782382	rs34267201	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,12:30:17:0.706:2	./.	./.	./.	./.	./.	./.	./.
chr22	46785301	rs11090875	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:31,29:29:60:0.483:2	0/1:33,50:28:83:0.602:2	./.	./.	./.	./.	./.	./.
chr22	46786315	rs4044210	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,20:29:20:1.00:2	0/1:19,15:29:34:0.441:2	./.	./.	./.	./.	./.	./.
chr22	46787694	rs6008794	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,10:31:12:0.833:2	0/1:1,37:33:38:0.974:2	0/1:46,13:33:59:0.220:2	./.	./.	./.	./.	./.	./.
chr22	46787697	rs6008795	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,10:32:12:0.833:2	0/1:1,35:33:36:0.972:2	0/1:46,14:31:60:0.233:2	./.	./.	./.	./.	./.	./.
chr22	46794475	rs45604542	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,53:31:128:0.417:2	./.	./.	./.	./.	./.	./.	./.
chr22	46805007	rs35717986	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,5:31:11:0.455:2	0/1:64,40:31:104:0.385:2	0/1:77,47:30:124:0.379:2	./.	./.	./.	./.	./.	./.
chr22	46858809	rs11914038	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,14:31:41:0.341:2	./.	./.	./.	./.	./.
chr22	46859821	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:31:86:0.047:2	./.
chr22	46860088	rs3747251	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,64:29:113:0.566:2	./.	0/1:154,4:32:158:0.025:2	./.	./.	./.
chr22	46929692	rs4823561	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,29:29:73:0.397:2	0/1:20,28:29:48:0.583:2	./.	0/1:0,73:28:73:1.00:2	0/1:86,22:30:108:0.204:2	0/1:0,79:29:79:1.00:2	0/1:2,79:29:81:0.975:2	0/1:1,99:28:100:0.990:2	0/1:66,48:29:114:0.421:2	0/1:0,80:29:80:1.00:2	0/1:0,49:28:49:1.00:2
chr22	46930107	rs8141744	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:78,77:29:155:0.497:2	./.	./.	./.	./.	0/1:114,73:30:187:0.390:2	0/1:79,56:30:135:0.415:2	./.
chr22	46930128	rs377280238	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,6:27:155:0.039:2
chr22	46931077	rs4823850	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,18:31:18:1.00:2	0/1:17,18:32:35:0.514:2	0/1:0,21:30:21:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,38:32:38:1.00:2	0/1:12,7:31:19:0.368:2	0/1:0,23:31:23:1.00:2	0/1:0,7:33:7:1.00:2
chr22	46931187	rs56207834	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,17:29:27:0.630:2	./.	./.	./.
chr22	46931402	rs11575871	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:11,13:29:24:0.542:2	./.	./.	./.	0/1:10,14:31:24:0.583:2	./.	./.
chr22	46931793	rs1009154	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,6:32:6:1.00:2	./.	0/1:0,11:31:11:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,12:31:12:1.00:2	0/1:6,7:34:13:0.538:2	0/1:0,7:31:7:1.00:2	0/1:0,4:33:4:1.00:2
chr22	46931838	rs1009155	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,9:28:9:1.00:2	./.	0/1:0,9:29:9:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,18:28:18:1.00:2	0/1:1,3:31:4:0.750:2	0/1:0,10:29:10:1.00:2	0/1:0,3:30:3:1.00:2
chr22	47058992	rs2542040	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,14:31:14:1.00:2	0/1:0,10:30:10:1.00:2	0/1:0,2:28:2:1.00:2	0/1:0,7:27:7:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,23:29:23:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,13:29:13:1.00:2	0/1:0,17:29:17:1.00:2	0/1:0,7:30:7:1.00:2
chr22	47059939	rs16995533	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,5:33:14:0.357:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	47070642	rs144224839	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,35:32:50:0.700:2
chr22	47087670	rs36211083	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:48,32:32:80:0.400:2	0/1:14,15:32:29:0.517:2	./.	./.	./.	./.	0/1:37,42:31:79:0.532:2	./.	./.	./.	0/1:32,26:32:58:0.448:2
chr22	47095235	rs13057352	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,87:31:184:0.473:2	./.	./.	./.	./.	./.	./.	./.
chr22	47108127	rs188039944	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,78:32:195:0.400:2	./.	./.	./.	./.
chr22	47108189	rs9616101	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:32:9:0.333:2	./.	./.	0/1:52,50:32:102:0.490:2	./.	./.	./.	./.	./.
chr22	47116905	rs12166204	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,35:31:65:0.538:2	0/1:42,18:31:60:0.300:2	./.	./.	./.	0/1:34,62:33:96:0.646:2	./.	./.
chr22	47185265	rs801606	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,19:32:37:0.514:2	0/1:7,11:32:18:0.611:2	0/1:3,3:31:6:0.500:2	0/1:18,21:30:39:0.538:2	0/1:10,30:32:41:0.750:2	0/1:0,61:31:61:1.00:2	0/1:16,30:31:46:0.652:2	0/1:0,52:31:52:1.00:2	0/1:0,41:33:42:1.00:2	0/1:23,24:31:48:0.511:2	0/1:0,45:32:47:1.00:2
chr22	47308045	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,56:32:186:0.301:2	./.	./.
chr22	47309247	rs17762500	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:32:11:0.545:2	./.	./.	./.	./.	0/1:62,62:31:124:0.500:2	0/1:1,49:32:50:0.980:2	./.	./.
chr22	47857537	rs130877	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,85:32:85:1.00:2	0/1:121,26:32:147:0.177:2	0/1:90,61:33:151:0.404:2	0/1:2,110:32:112:0.982:2	0/1:98,55:34:153:0.359:2	0/1:93,50:32:143:0.350:2	0/1:118,57:33:175:0.326:2
chr22	47857551	rs130878	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,71:31:72:0.986:2	0/1:109,19:32:128:0.148:2	0/1:82,52:32:134:0.388:2	0/1:0,108:32:108:1.00:2	0/1:94,44:32:138:0.319:2	0/1:83,49:31:132:0.371:2	0/1:110,60:32:170:0.353:2
chr22	47857563	rs142074671	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,7:32:109:0.064:2	./.	./.	./.	./.	./.
chr22	47857576	rs130879	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,38:32:38:1.00:2	./.	0/1:54,27:32:81:0.333:2	0/1:0,80:32:80:1.00:2	0/1:62,31:32:93:0.333:2	0/1:63,30:31:93:0.323:2	0/1:88,37:32:125:0.296:2
chr22	48940553	rs4823540	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,78:30:78:1.00:2	0/1:0,52:29:52:1.00:2	0/1:6,4:30:10:0.400:2	0/1:0,111:30:111:1.00:2	0/1:0,124:29:124:1.00:2	0/1:0,126:29:126:1.00:2	0/1:2,148:29:150:0.987:2	./.	0/1:100,55:31:155:0.355:2	0/1:62,63:29:125:0.504:2	0/1:66,50:30:116:0.431:2
chr22	48940644	rs9615919	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,61:31:61:1.00:2	0/1:0,29:31:29:1.00:2	./.	0/1:48,34:31:82:0.415:2	0/1:1,69:31:70:0.986:2	0/1:1,63:31:64:0.984:2	0/1:2,57:31:59:0.966:2	./.	0/1:57,36:32:93:0.387:2	0/1:31,25:30:56:0.446:2	0/1:38,22:30:60:0.367:2
chr22	49246633	rs117678998	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,34:32:61:0.557:2	./.	./.	./.	0/1:44,34:33:78:0.436:2	./.	./.	./.
chr22	49246723	rs28394186	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,7:32:26:0.269:2	0/1:8,9:26:17:0.529:2	./.	./.	./.	0/1:17,16:27:33:0.485:2	0/1:36,20:29:56:0.357:2	./.	0/1:14,18:28:32:0.563:2	0/1:15,16:27:31:0.516:2	0/1:0,23:28:23:1.00:2
chr22	49834747	rs1016809	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,98:31:99:0.990:2	0/1:0,71:32:71:1.00:2	0/1:0,15:30:15:1.00:2	0/1:91,77:30:168:0.458:2	0/1:121,75:30:196:0.383:2	0/1:86,94:30:180:0.522:2	0/1:102,92:31:194:0.474:2	0/1:1,188:31:189:0.995:2	0/1:75,62:31:137:0.453:2	0/1:73,55:30:128:0.430:2	0/1:60,47:31:107:0.439:2
chr22	50014156	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:32:85:0.047:2	./.	./.	./.
chr22	50014226	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,43:32:92:0.467:2	./.	./.	./.
chr22	50017201	.	A	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,9:20:121:0.074:2	0/1:147,18:14:165:0.109:2	0/1:146,23:11:169:0.136:2	0/1:163,15:17:178:0.084:2	0/1:135,21:16:156:0.135:2	./.	0/1:81,9:17:90:0.100:2	./.
chr22	50017234	rs916362	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:57,49:29:106:0.462:2	0/1:31,26:28:57:0.456:2	0/1:0,20:30:20:1.00:2	0/1:86,74:30:160:0.463:2	0/1:91,83:30:174:0.477:2	0/1:0,170:30:170:1.00:2	./.	0/1:2,172:29:174:0.989:2	0/1:0,144:30:144:1.00:2	0/1:69,49:31:118:0.415:2	./.
chr22	50017930	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,6:29:79:0.076:2
chr22	50018026	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:99,4:30:103:0.039:2	./.	./.	./.	./.	./.	./.
chr22	50018045	rs763128	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,30:31:72:0.417:2	0/1:23,12:29:36:0.343:2	0/1:1,8:31:9:0.889:2	0/1:31,24:30:56:0.436:2	0/1:54,47:30:101:0.465:2	0/1:0,90:31:90:1.00:2	0/1:42,54:31:96:0.563:2	0/1:60,55:32:115:0.478:2	0/1:0,85:32:85:1.00:2	0/1:25,31:32:56:0.554:2	0/1:33,30:31:64:0.476:2
chr22	50018069	rs2011097	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,36:29:73:0.493:2	0/1:17,11:28:28:0.393:2	0/1:0,10:31:10:1.00:2	0/1:27,36:32:63:0.571:2	0/1:62,45:32:107:0.421:2	0/1:0,101:32:101:1.00:2	0/1:42,52:32:94:0.553:2	0/1:52,66:31:118:0.559:2	0/1:0,88:31:89:1.00:2	0/1:30,34:29:64:0.531:2	0/1:30,37:31:67:0.552:2
chr22	50018497	rs5770594	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,17:31:37:0.459:2	0/1:2,4:32:6:0.667:2	0/1:0,3:30:3:1.00:2	0/1:27,25:30:52:0.481:2	0/1:17,11:29:28:0.393:2	0/1:7,13:28:20:0.650:2	0/1:22,11:30:33:0.333:2	0/1:24,20:29:44:0.455:2	0/1:0,32:30:32:1.00:2	0/1:23,10:30:33:0.303:2	0/1:15,15:29:30:0.500:2
chr22	50018555	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:33:52:0.077:2	./.	./.	./.	./.
chr22	50169366	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:93,4:33:97:0.041:2	./.	./.	./.	./.	./.	./.	./.
chr22	50181137	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,4:30:50:0.080:2	./.	./.	./.	./.	./.	./.
chr22	50187853	rs35331092	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:29,15:32:44:0.341:2	0/1:19,18:31:37:0.486:2	0/1:4,8:30:12:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	50216725	rs147595191	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,53:32:123:0.431:2	./.	./.	./.
chr22	50217387	rs11912787	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:36,43:31:79:0.544:2	0/1:19,20:32:39:0.513:2	0/1:7,5:32:12:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	50277835	rs910796	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:29:60:1.00:2	0/1:0,31:29:31:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,79:29:79:1.00:2	0/1:0,115:28:115:1.00:2	0/1:0,85:29:85:1.00:2	0/1:1,88:28:90:0.989:2	0/1:70,45:28:115:0.391:2	0/1:0,71:29:71:1.00:2	0/1:0,57:28:57:1.00:2	0/1:41,37:29:78:0.474:2
chr22	50277883	rs910797	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,67:29:67:1.00:2	0/1:0,39:29:39:1.00:2	0/1:0,12:29:12:1.00:2	0/1:0,87:30:87:1.00:2	0/1:0,98:30:98:1.00:2	0/1:0,72:30:72:1.00:2	0/1:0,74:30:74:1.00:2	0/1:60,41:29:101:0.406:2	0/1:0,58:30:58:1.00:2	0/1:0,50:29:50:1.00:2	0/1:34,35:29:69:0.507:2
chr22	50278031	rs146151193	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,52:32:91:0.571:2
chr22	50278339	rs369020472	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,39:28:85:0.459:2	./.	./.	./.	./.	./.
chr22	50278438	rs910798	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:31:23:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,2:27:2:1.00:2	0/1:0,23:30:23:1.00:2	0/1:1,23:30:24:0.958:2	0/1:1,28:30:29:0.966:2	0/1:0,22:29:22:1.00:2	0/1:13,18:30:31:0.581:2	0/1:0,27:31:27:1.00:2	0/1:0,21:31:21:1.00:2	0/1:15,12:30:27:0.444:2
chr22	50278568	rs910799	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,12:30:22:0.545:2	0/1:7,8:31:15:0.533:2	./.	0/1:0,33:29:33:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,37:29:37:1.00:2	0/1:1,32:29:33:0.970:2	0/1:18,9:31:27:0.333:2	0/1:0,32:30:32:1.00:2	0/1:0,21:30:21:1.00:2	0/1:14,15:28:29:0.517:2
chr22	50278584	rs146411541	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,10:31:19:0.556:2	./.
chr22	50278642	rs910800	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:9,6:31:15:0.400:2	0/1:5,6:32:11:0.545:2	0/1:1,3:31:4:0.750:2	0/1:0,24:31:24:1.00:2	0/1:0,17:29:17:1.00:2	0/1:0,20:29:20:1.00:2	0/1:0,23:30:23:1.00:2	0/1:14,9:30:23:0.391:2	0/1:0,27:31:28:1.00:2	0/1:0,16:29:16:1.00:2	0/1:13,9:30:22:0.409:2
chr22	50279486	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:34:133:0.030:2	./.	./.
chr22	50280136	rs5770755	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:39,42:28:82:0.519:2	0/1:36,27:28:63:0.429:2	0/1:10,10:32:20:0.500:2	0/1:0,126:27:126:1.00:2	0/1:0,169:28:169:1.00:2	0/1:1,141:28:142:0.993:2	0/1:0,171:27:171:1.00:2	0/1:81,85:28:166:0.512:2	0/1:0,115:27:116:1.00:2	0/1:0,99:28:99:1.00:2	0/1:61,40:26:102:0.396:2
chr22	50280311	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:32:93:0.043:2	./.	./.	./.
chr22	50281917	rs4624	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:9,13:33:23:0.591:2	0/1:4,7:33:11:0.636:2	./.	0/1:0,17:33:17:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,14:32:14:1.00:2	0/1:7,7:31:14:0.500:2	0/1:1,16:31:17:0.941:2	0/1:0,9:33:9:1.00:2	0/1:7,7:32:14:0.500:2
chr22	50282204	rs2092982	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,19:31:42:0.452:2	0/1:8,16:30:24:0.667:2	./.	0/1:0,46:31:46:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,24:31:24:1.00:2	0/1:12,20:31:32:0.625:2	0/1:1,49:32:50:0.980:2	0/1:0,40:31:40:1.00:2	0/1:26,24:31:50:0.480:2
chr22	50282351	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:35:107:0.037:2	./.	./.	./.	./.
chr22	50282603	rs738711	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,62:29:114:0.544:2	0/1:30,32:28:62:0.516:2	0/1:10,12:29:22:0.545:2	0/1:1,119:29:120:0.992:2	0/1:3,115:30:118:0.975:2	0/1:0,127:29:127:1.00:2	0/1:0,118:29:118:1.00:2	0/1:86,70:29:156:0.449:2	0/1:1,134:30:135:0.993:2	0/1:0,108:29:108:1.00:2	0/1:81,101:28:182:0.555:2
chr22	50282986	rs738712	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:31:46:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,17:31:17:1.00:2	0/1:28,26:31:54:0.481:2	0/1:0,44:32:44:1.00:2	0/1:0,26:32:26:1.00:2	0/1:26,30:31:56:0.536:2
chr22	50283204	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:31:72:0.056:2	./.	./.	./.	./.	./.
chr22	50283348	rs5770758	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,170:32:171:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,31:32:31:1.00:2	./.	0/1:0,165:32:165:1.00:2	0/1:0,159:32:160:1.00:2	0/1:0,155:32:155:1.00:2	0/1:91,74:32:165:0.448:2	0/1:0,152:33:152:1.00:2	0/1:0,131:32:132:1.00:2	0/1:0,174:32:174:1.00:2
chr22	50297888	rs3922872	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,21:28:48:0.438:2	./.	./.	0/1:16,10:25:26:0.385:2
chr22	50301476	rs8135963	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:41,21:28:63:0.339:2	0/1:26,10:28:36:0.278:2	0/1:8,5:28:13:0.385:2	./.	./.	./.	./.	0/1:85,50:28:135:0.370:2	./.	./.	0/1:54,24:27:78:0.308:2
chr22	50312869	rs28562884	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,32:31:62:0.516:2	./.	./.	0/1:29,25:33:54:0.463:2
chr22	50313438	rs9616388	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:25,25:31:50:0.500:2	0/1:22,18:32:40:0.450:2	0/1:3,7:30:10:0.700:2	./.	./.	./.	./.	0/1:50,53:32:103:0.515:2	./.	./.	0/1:50,46:32:96:0.479:2
chr22	50315382	rs74510325	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:31:8:0.625:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	50315952	rs7410276	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:12,18:32:30:0.600:2	0/1:18,9:31:27:0.333:2	0/1:8,4:32:12:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	50315973	rs12160965	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,23:32:47:0.489:2	./.	./.	0/1:27,18:30:45:0.400:2
chr22	50318061	rs113168785	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,82:32:178:0.461:2	0/1:107,89:32:196:0.454:2	./.	./.	./.	./.
chr22	50319079	rs11545762	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,31:27:58:0.534:2	./.	./.	0/1:38,24:28:62:0.387:2
chr22	50319170	rs11545763	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,39:33:67:0.582:2	./.	./.	0/1:27,30:32:57:0.526:2
chr22	50319185	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:54,4:29:58:0.069:2	./.	./.	./.	./.	./.	./.
chr22	50320943	rs1608	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:32,37:31:69:0.536:2	0/1:25,10:32:35:0.286:2	0/1:2,3:30:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	50354819	rs11541025	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.	0/1:0,28:30:28:1.00:2	./.	./.	./.	0/1:6,8:32:14:0.571:2	0/1:0,23:31:23:1.00:2	0/1:2,4:33:6:0.667:2
chr22	50356693	rs4077129	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,33:28:33:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,51:30:51:1.00:2	./.	0/1:0,36:30:36:1.00:2	0/1:1,7:28:8:0.875:2	0/1:0,42:31:42:1.00:2	0/1:31,18:32:49:0.367:2	0/1:24,14:28:38:0.368:2	0/1:19,7:32:26:0.269:2
chr22	50435480	rs5771069	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:100,4:32:104:0.038:2	0/1:20,12:32:32:0.375:2	0/1:1,182:33:183:0.995:2	0/1:1,189:32:190:0.995:2	./.	./.	./.	0/1:101,91:33:192:0.474:2	0/1:0,183:32:183:1.00:2	0/1:101,92:33:193:0.477:2
chr22	50435765	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:33:76:0.053:2
chr22	50439194	rs9617090	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:12,17:33:29:0.586:2	0/1:5,9:31:14:0.643:2	0/1:1,2:32:3:0.667:2	./.	./.	0/1:0,39:31:39:1.00:2	0/1:0,18:32:18:1.00:2	./.	0/1:8,14:32:22:0.636:2	./.	./.
chr22	50454970	.	C	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,7:25:22:0.318:2	0/1:49,12:18:61:0.197:2	0/1:19,5:24:24:0.208:2	0/1:21,6:20:27:0.222:2	0/1:27,8:22:35:0.229:2	./.	./.	./.
chr22	50457262	rs77625006	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:32:7:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	50468907	rs738333	C	G,T	.	PASS	AC=6,2;AF=0.250,0.083;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	0/2:32:2:1.00:2	0/2:32:22:0.727:2	0/1:27:7:1.00:2	0/1:27:8:0.500:2	0/1:26:9:0.889:2	0/1:26:8:0.375:2	0/1:28:14:0.286:2	./.	0/1:25:7:0.429:2
chr22	50468933	rs79298	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:2,3:31:5:0.600:2	0/1:15,20:33:35:0.571:2	./.	./.	./.	./.	./.	0/1:7,9:32:16:0.563:2	./.
chr22	50470516	rs11101958	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:31:9:0.444:2	0/1:53,36:30:89:0.404:2	./.	./.	./.	./.	./.	./.	./.
chr22	50479680	rs149161124	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,24:30:55:0.436:2	./.	./.	./.
chr22	50480108	rs9628315	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:44,39:31:83:0.470:2	0/1:36,23:31:59:0.390:2	./.	0/1:86,70:32:156:0.449:2	0/1:1,183:32:185:0.995:2	0/1:100,66:31:166:0.398:2	0/1:2,167:32:169:0.988:2	0/1:97,84:31:181:0.464:2	0/1:75,77:32:152:0.507:2	0/1:45,59:31:104:0.567:2	0/1:0,116:31:116:1.00:2
chr22	50480161	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:32:175:0.023:2	./.	./.	./.	./.
chr22	50488562	rs184510799	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:35,20:31:55:0.364:2	./.	./.	./.	./.	./.	./.
chr22	50493062	rs17013085	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,18:30:34:0.529:2	0/1:12,6:29:18:0.333:2	0/1:1,3:29:4:0.750:2	0/1:17,17:30:34:0.500:2	./.	./.	0/1:3,10:28:13:0.769:2	./.	./.	./.	./.
chr22	50502491	rs11568188	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,4:33:42:0.095:2	0/1:6,3:34:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	50502526	rs11568187	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:43,10:26:53:0.189:2	0/1:8,6:26:14:0.429:2	./.	0/1:49,12:27:62:0.197:2	./.	./.	./.	./.	./.	./.	./.
chr22	50502544	rs11568186	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,11:32:48:0.229:2	0/1:10,8:31:18:0.444:2	0/1:7,4:31:11:0.364:2	0/1:45,16:30:61:0.262:2	./.	./.	./.	./.	./.	./.	./.
chr22	50506878	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:57,13:12:70:0.186:2	./.	./.	./.
chr22	50515270	rs6010164	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,4:31:8:0.500:2	0/1:16,11:30:27:0.407:2	./.	./.	./.	./.	./.	./.	./.
chr22	50515273	rs6010165	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,4:32:8:0.500:2	0/1:16,11:29:27:0.407:2	./.	./.	./.	./.	./.	./.	./.
chr22	50515843	rs6010260	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,4:32:9:0.444:2	0/1:88,48:30:136:0.353:2	./.	./.	./.	./.	./.	./.	./.
chr22	50528569	rs12628964	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.	./.
chr22	50528916	rs9617018	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:56,21:30:77:0.273:2	./.	0/1:37,43:30:80:0.538:2	./.	0/1:30,17:31:47:0.362:2	./.	./.
chr22	50529134	rs8142824	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,16:32:37:0.432:2	0/1:10,14:31:24:0.583:2	./.	0/1:11,7:31:18:0.389:2	./.	0/1:19,18:31:37:0.486:2	./.	./.
chr22	50529146	rs8140485	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,8:31:23:0.348:2	0/1:8,10:31:18:0.556:2	./.	0/1:10,4:29:14:0.286:2	./.	0/1:15,15:31:30:0.500:2	./.	./.
chr22	50529148	rs8140486	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,8:32:23:0.348:2	0/1:8,10:31:18:0.556:2	./.	0/1:9,4:29:13:0.308:2	./.	0/1:15,15:32:30:0.500:2	./.	./.
chr22	50529462	rs8139235	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,37:29:90:0.411:2	0/1:37,25:29:62:0.403:2	./.	0/1:38,40:29:78:0.513:2	./.	0/1:41,32:31:73:0.438:2	./.	./.
chr22	50529756	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:30:47:0.085:2	./.
chr22	50529850	rs56144269	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:27:8:0.500:2	0/1:3,6:24:9:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	50530501	rs9617066	A	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,7:31:19:0.368:2	0/1:100,76:32:176:0.432:2	0/1:93,85:31:178:0.478:2	./.	0/1:84,70:31:154:0.455:2	./.	0/1:104,83:33:187:0.444:2	./.	./.
chr22	50537901	rs12169319	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:95,77:30:172:0.448:2	./.	./.	./.	./.	./.	./.	./.
chr22	50546666	rs3810971	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:30:10:0.500:2	0/1:56,36:31:92:0.391:2	0/1:102,69:31:171:0.404:2	./.	0/1:82,79:31:161:0.491:2	./.	0/1:46,48:32:94:0.511:2	./.	./.
chr22	50547247	rs138217	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,120:30:122:0.984:2	0/1:0,97:30:97:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,147:30:147:1.00:2	0/1:0,166:29:166:1.00:2	0/1:0,167:30:167:1.00:2	0/1:0,184:30:186:1.00:2	0/1:0,159:30:159:1.00:2	0/1:0,175:31:175:1.00:2	0/1:0,87:30:87:1.00:2	0/1:0,159:30:160:1.00:2
chr22	50552119	rs150056734	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,17:31:44:0.386:2	./.	./.	./.	./.	./.	./.	./.
chr22	50555619	rs138222	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:31:46:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,6:29:6:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,25:31:25:1.00:2	0/1:36,28:32:64:0.438:2	0/1:0,33:31:33:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,49:31:49:1.00:2	0/1:41,27:31:68:0.397:2
chr22	50555635	rs882753	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:21,18:32:39:0.462:2	./.	0/1:31,16:32:47:0.340:2	./.	0/1:35,25:33:60:0.417:2	./.	./.
chr22	50555686	rs760749	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:29,40:32:69:0.580:2	0/1:24,18:31:42:0.429:2	./.	0/1:21,44:32:65:0.677:2	0/1:30,34:32:64:0.531:2	0/1:53,31:33:84:0.369:2	./.	./.	./.	./.	0/1:51,45:32:96:0.469:2
chr22	50558946	rs71316583	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,23:34:41:0.561:2	./.	./.
chr22	50566870	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,28:32:96:0.292:2	./.	./.
chr22	50572473	rs2340601	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,10:31:15:0.667:2	0/1:43,40:31:83:0.482:2	0/1:34,44:31:78:0.564:2	./.	0/1:35,32:32:67:0.478:2	./.	0/1:54,48:33:102:0.471:2	./.	./.
chr22	50582550	rs2272836	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,68:32:161:0.422:2	./.	0/1:91,48:33:139:0.345:2	./.	0/1:88,50:32:138:0.362:2	./.	./.
chr22	50582626	rs2272837	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,6:32:12:0.500:2	0/1:73,78:31:151:0.517:2	0/1:74,57:31:131:0.435:2	./.	0/1:85,38:30:123:0.309:2	./.	0/1:73,57:32:130:0.438:2	./.	./.
chr22	50582630	rs11704548	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,53:32:122:0.434:2	./.	./.
chr22	50584201	rs2272838	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,4:32:5:0.800:2	0/1:25,22:33:47:0.468:2	0/1:24,13:32:37:0.351:2	./.	0/1:16,17:32:33:0.515:2	./.	0/1:30,19:33:49:0.388:2	./.	./.
chr22	50585528	rs5771080	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,76:30:158:0.481:2	0/1:4,135:31:139:0.971:2	0/1:87,72:32:159:0.453:2	./.	./.
chr22	50585595	rs4838851	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,15:28:26:0.577:2	0/1:68,52:30:120:0.433:2	0/1:94,71:29:165:0.430:2	./.	0/1:83,73:29:156:0.468:2	./.	0/1:79,67:30:146:0.459:2	./.	./.
chr22	50588131	rs138271	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:51,58:29:109:0.532:2	0/1:24,31:31:55:0.564:2	0/1:11,14:29:25:0.560:2	./.	./.	./.	./.	./.	./.	0/1:2,94:30:96:0.979:2	./.
chr22	50589196	rs2294396	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,46:29:97:0.474:2	0/1:48,35:31:83:0.422:2	./.	0/1:83,71:30:155:0.461:2	0/1:93,93:30:187:0.500:2	0/1:85,107:30:192:0.557:2	./.	./.	./.	./.	0/1:75,65:29:140:0.464:2
chr22	50591499	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:173,4:32:177:0.023:2	./.	./.	./.	./.	./.	./.
chr22	50596655	rs140564205	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,59:31:120:0.492:2	./.	./.	./.	./.
chr22	50599466	rs2272843	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,58:31:107:0.547:2	./.	0/1:60,44:31:104:0.423:2	./.	0/1:64,36:32:100:0.360:2	./.	./.
chr22	50613841	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:30:110:0.036:2	./.	./.	./.	./.
chr22	50616656	rs7286904	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:28:2:1.00:2	./.	./.	./.	./.
chr22	50616806	rs5771206	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,2:33:2:1.00:2	./.	./.	0/1:0,3:32:3:1.00:2	0/1:11,8:33:19:0.421:2	0/1:0,4:33:4:1.00:2	0/1:0,2:34:2:1.00:2	0/1:1,3:30:4:0.750:2	./.	./.	./.
chr22	50632869	rs4838813	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,55:31:109:0.505:2	./.	./.
chr22	50633436	rs145870754	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,23:28:45:0.523:2	./.	./.	./.
chr22	50637597	rs8238	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:35:2:1.00:2	0/1:0,10:32:10:1.00:2	0/1:7,3:30:10:0.300:2	0/1:9,13:32:22:0.591:2	0/1:0,5:33:5:1.00:2	./.	0/1:5,5:32:10:0.500:2	./.	0/1:12,17:33:29:0.586:2
chr22	50649297	rs36098069	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,32:31:94:0.340:2	./.	./.
chr22	50654186	rs117539518	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,25:32:52:0.481:2	0/1:12,9:33:21:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	50655543	rs34163881	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,27:33:47:0.574:2	./.	./.	./.
chr22	50655676	rs2272852	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,3:31:8:0.375:2	./.	./.	./.	./.
chr22	50657010	rs4838864	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:32:58:1.00:2	0/1:0,41:33:41:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,111:33:111:1.00:2	0/1:0,174:32:174:1.00:2	0/1:0,120:33:120:1.00:2	0/1:0,172:33:172:1.00:2	0/1:0,126:33:126:1.00:2	0/1:0,93:33:93:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,52:32:52:1.00:2
chr22	50658424	rs11703226	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:29:63:1.00:2	0/1:1,24:27:25:0.960:2	0/1:0,6:31:6:1.00:2	0/1:48,51:29:100:0.515:2	0/1:47,70:29:117:0.598:2	./.	./.	0/1:0,83:27:83:1.00:2	0/1:50,36:27:86:0.419:2	0/1:0,66:28:66:1.00:2	0/1:23,35:24:58:0.603:2
chr22	50658698	rs5771107	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:72,40:32:112:0.357:2	0/1:82,56:32:138:0.406:2	0/1:60,53:32:113:0.469:2	./.	./.	./.	./.	0/1:39,33:32:72:0.458:2
chr22	50659212	rs141527317	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:31:88:0.045:2	./.	./.	./.	./.
chr22	50659247	rs202211995	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,4:28:38:0.105:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	50659598	rs149231425	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,41:31:98:0.418:2	./.	./.	./.	./.	./.	./.	./.
chr22	50660137	rs34455105	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,50:29:87:0.581:2	./.	./.
chr22	50664612	rs4838865	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,83:30:84:0.988:2	0/1:1,49:30:50:0.980:2	0/1:0,14:29:14:1.00:2	0/1:1,107:30:108:0.991:2	0/1:0,108:30:108:1.00:2	0/1:44,54:30:99:0.551:2	0/1:58,61:31:119:0.513:2	0/1:0,109:31:109:1.00:2	0/1:59,62:32:121:0.512:2	0/1:0,95:30:95:1.00:2	0/1:0,114:31:114:1.00:2
chr22	50682865	rs5771270	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,31:31:31:1.00:2	0/1:2,26:31:28:0.929:2	0/1:1,10:30:11:0.909:2	0/1:47,32:30:80:0.405:2	0/1:17,35:31:52:0.673:2	./.	0/1:34,28:28:62:0.452:2	0/1:1,44:31:45:0.978:2	0/1:22,19:31:41:0.463:2	0/1:0,39:31:39:1.00:2	0/1:23,29:30:53:0.558:2
chr22	50683917	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:30:88:0.045:2	./.	./.	./.
chr22	50686371	rs34402301	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,49:32:108:0.454:2	0/1:18,17:31:35:0.486:2	0/1:7,6:32:13:0.462:2	0/1:70,72:32:142:0.507:2	0/1:84,100:31:184:0.543:2	./.	./.	./.	./.	./.	./.
chr22	50686372	rs200224305	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:31:13:0.538:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	50688348	rs1555048	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:29:64:1.00:2	0/1:0,40:28:40:1.00:2	0/1:0,18:29:18:1.00:2	0/1:2,121:30:123:0.984:2	0/1:2,137:29:139:0.986:2	0/1:66,63:29:129:0.488:2	0/1:92,69:30:161:0.429:2	0/1:0,118:30:118:1.00:2	0/1:37,54:30:91:0.593:2	0/1:0,86:30:86:1.00:2	0/1:0,70:29:70:1.00:2
chr22	50694297	rs1129880	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,51:30:52:0.981:2	0/1:1,40:30:41:0.976:2	0/1:0,11:28:11:1.00:2	0/1:0,108:29:108:1.00:2	0/1:1,120:29:121:0.992:2	0/1:48,39:29:87:0.448:2	0/1:85,51:29:136:0.375:2	0/1:2,132:30:134:0.985:2	0/1:45,46:30:91:0.505:2	0/1:0,69:29:69:1.00:2	0/1:0,60:29:60:1.00:2
chr22	50695379	rs144750295	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,6:32:15:0.400:2	./.	./.	./.
chr22	50696662	rs73187284	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,50:31:52:0.962:2	0/1:0,28:31:28:1.00:2	0/1:0,13:30:13:1.00:2	0/1:44,57:30:101:0.564:2	0/1:64,55:30:119:0.462:2	./.	0/1:72,42:30:114:0.368:2	0/1:5,144:31:149:0.966:2	0/1:47,49:31:96:0.510:2	0/1:0,73:30:73:1.00:2	0/1:30,36:31:66:0.545:2
chr22	50696678	rs34422484	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,60:30:122:0.492:2	./.	./.	./.	./.	./.
chr22	50699668	rs2272857	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:10,9:33:19:0.474:2	0/1:12,9:32:21:0.429:2	./.	0/1:2,55:31:57:0.965:2	0/1:0,52:31:52:1.00:2	0/1:0,58:32:58:1.00:2	0/1:31,27:31:58:0.466:2	./.	0/1:22,18:32:40:0.450:2	./.	0/1:0,28:32:28:1.00:2
chr22	50699935	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.
chr22	50703805	rs200309150	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,9:20:106:0.085:2
chr22	50704661	rs2076139	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,11:28:27:0.407:2	0/1:9,10:28:19:0.526:2	0/1:5,4:32:9:0.444:2	0/1:0,64:30:64:1.00:2	0/1:0,58:30:58:1.00:2	0/1:0,55:29:55:1.00:2	0/1:28,24:29:52:0.462:2	./.	0/1:36,26:31:62:0.419:2	./.	0/1:1,65:29:66:0.985:2
chr22	50705466	rs760748	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:31:19:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,37:30:37:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,53:29:53:1.00:2	0/1:0,42:30:42:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,27:31:27:1.00:2
chr22	50705547	rs2066777	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,8:28:17:0.471:2	./.	./.	./.	./.	./.
chr22	50716167	rs1127000	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,70:30:70:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,14:31:14:1.00:2	0/1:65,39:30:105:0.375:2	0/1:69,38:30:107:0.355:2	0/1:47,49:30:96:0.510:2	0/1:78,44:31:123:0.361:2	0/1:4,118:30:122:0.967:2	0/1:66,43:31:109:0.394:2	0/1:0,84:30:84:1.00:2	0/1:52,31:29:83:0.373:2
chr22	50719251	rs11547734	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:28:65:1.00:2	0/1:0,36:28:36:1.00:2	0/1:0,14:29:14:1.00:2	0/1:79,46:27:125:0.368:2	0/1:92,56:26:148:0.378:2	0/1:67,86:28:153:0.562:2	0/1:66,31:28:97:0.320:2	0/1:0,93:28:93:1.00:2	0/1:51,33:28:84:0.393:2	0/1:0,65:28:65:1.00:2	0/1:34,30:29:64:0.469:2
chr22	50719288	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:30:138:0.029:2	./.	./.	./.	./.
chr22	50719293	rs138514376	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:32:143:0.028:2	./.	./.	./.	./.
chr22	50719842	rs137895110	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,17:32:21:0.810:2
chr22	50720622	rs11547728	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,15:31:15:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,3:31:3:1.00:2	0/1:10,6:30:16:0.375:2	0/1:4,8:30:12:0.667:2	./.	0/1:4,4:31:8:0.500:2	0/1:0,25:29:25:1.00:2	./.	0/1:0,24:31:24:1.00:2	0/1:5,3:30:8:0.375:2
chr22	50721182	rs202201273	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,8:15:30:0.267:2	./.
chr22	50721804	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:32:97:0.041:2	./.	./.	./.	./.
chr22	50722134	rs11547731	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:30:24:1.00:2	0/1:1,21:29:22:0.955:2	0/1:0,4:30:4:1.00:2	0/1:0,40:29:40:1.00:2	0/1:19,20:28:39:0.513:2	0/1:0,45:30:45:1.00:2	0/1:27,14:27:41:0.341:2	0/1:0,47:28:47:1.00:2	./.	0/1:0,31:29:31:1.00:2	./.
chr22	50722167	rs28470336	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,25:33:51:0.490:2	./.	./.
chr22	50728062	rs28379706	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:6,4:29:10:0.400:2	0/1:5,5:26:10:0.500:2	./.	0/1:4,6:25:10:0.600:2	./.	./.	0/1:5,4:26:9:0.444:2	./.	./.	./.	./.
chr22	50751529	rs67248662	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,8:28:12:0.667:2	0/1:52,48:29:100:0.480:2	./.	0/1:38,73:30:111:0.658:2	./.	0/1:0,117:28:117:1.00:2	./.	0/1:0,85:29:85:1.00:2	0/1:32,49:29:81:0.605:2
chr22	50751926	rs373757895	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,18:29:36:0.514:2
chr22	50752150	rs68178377	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,21:31:42:0.500:2	./.	0/1:19,24:29:43:0.558:2	./.	0/1:0,36:30:36:1.00:2	./.	0/1:0,35:31:35:1.00:2	0/1:12,9:31:21:0.429:2
chr22	50752292	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:31:70:0.057:2	./.	./.	./.
chr22	50753334	rs73439311	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:31:13:0.462:2	./.	./.	0/1:74,69:31:143:0.483:2	0/1:85,72:31:157:0.459:2	0/1:1,123:30:124:0.992:2	./.	0/1:0,78:31:78:1.00:2	0/1:40,56:31:96:0.583:2
chr22	50754466	rs62241230	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,5:32:10:0.500:2	./.	./.	0/1:46,57:30:103:0.553:2	./.	0/1:2,119:31:121:0.983:2	./.	0/1:0,72:32:72:1.00:2	0/1:54,41:30:95:0.432:2
chr22	50754648	rs11553141	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,5:31:5:1.00:2	./.	./.	0/1:15,11:27:26:0.423:2	0/1:12,17:27:29:0.586:2	0/1:0,22:27:22:1.00:2	./.	0/1:0,17:28:17:1.00:2	./.
chr22	50870736	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:31:102:0.039:2	./.	./.	./.	./.
chr22	50873497	rs1134848	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:9,7:31:16:0.438:2	./.	./.	0/1:9,9:31:18:0.500:2	./.	./.	./.	./.	0/1:8,6:30:14:0.429:2	./.	./.
chr22	50877144	rs45528946	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:33:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chr22	50877166	rs4824131	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,28:32:28:1.00:2	0/1:0,11:28:11:1.00:2	./.	0/1:23,19:31:42:0.452:2	0/1:13,21:28:34:0.618:2	0/1:12,15:29:27:0.556:2	0/1:19,17:31:36:0.472:2	./.	0/1:0,30:31:30:1.00:2	./.	0/1:0,36:30:36:1.00:2
chr22	50878196	rs13057311	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:36,35:30:71:0.493:2	0/1:16,16:32:32:0.500:2	./.	0/1:57,55:32:112:0.491:2	./.	./.	0/1:69,54:31:123:0.439:2	./.	0/1:0,98:33:98:1.00:2	./.	./.
chr22	50879447	rs2273260	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	./.	./.
chr22	50885649	rs141053122	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,51:32:124:0.411:2	./.	./.	./.
chr22	50885775	rs1053744	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,86:30:87:0.989:2	0/1:0,59:28:59:1.00:2	0/1:11,5:27:16:0.313:2	0/1:97,95:29:192:0.495:2	0/1:103,94:30:197:0.477:2	0/1:108,79:30:187:0.422:2	0/1:104,80:29:184:0.435:2	./.	0/1:0,120:31:120:1.00:2	./.	0/1:61,52:28:113:0.460:2
chr22	50886828	rs199972466	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,49:31:78:0.628:2	./.	./.	./.	./.	./.
chr22	50893338	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:32:72:0.056:2	./.	./.	./.	./.
chr22	50894757	rs199724727	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,10:15:72:0.139:2	./.
chr22	50894987	rs79468232	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:7,3:30:10:0.300:2	./.	./.	./.	./.	./.	./.
chr22	50895020	rs5771001	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:27:13:0.462:2	0/1:4,4:31:8:0.500:2	./.	./.	./.	0/1:6,10:30:16:0.625:2	0/1:3,11:30:14:0.786:2	./.	./.	./.	0/1:0,5:30:5:1.00:2
chr22	50897741	rs368062270	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:30:124:0.032:2	./.	./.	./.	./.	./.
chr22	50898026	rs58335489	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,5:31:8:0.625:2
chr22	50901009	rs5771037	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,16:30:36:0.444:2
chr22	50901786	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:31:76:0.053:2
chr22	50906232	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:28,4:33:32:0.125:2	./.	./.	./.	./.	./.	./.
chr22	50906254	rs375698739	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,4:31:28:0.143:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	50906267	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,4:31:33:0.121:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	50921181	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,4:30:7:0.571:2	./.	./.	./.	./.
chr22	50926407	rs2232882	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,36:31:71:0.507:2	./.	./.	./.
chr22	50926768	rs2232883	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,22:31:49:0.449:2	./.	./.	./.	./.	0/1:18,24:32:42:0.571:2
chr22	50928005	rs2232884	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,15:33:28:0.536:2
chr22	50928026	rs2232885	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,3:31:4:0.750:2	0/1:30,27:29:57:0.474:2	./.	./.	./.	./.	./.	0/1:18,26:31:44:0.591:2	./.
chr22	50941985	rs6009975	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,22:30:22:1.00:2	0/1:0,15:31:15:1.00:2	./.	0/1:0,21:30:21:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,18:30:18:1.00:2	0/1:1,11:32:12:0.917:2	0/1:0,15:32:15:1.00:2	0/1:0,13:31:13:1.00:2	0/1:0,10:30:10:1.00:2	0/1:14,6:33:20:0.300:2
chr22	50942121	rs13056405	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:31:6:0.500:2	./.	./.	./.	0/1:1,3:27:4:0.750:2	./.	./.	./.	./.	./.	./.
chr22	50943004	rs762671	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:31:10:0.400:2	0/1:5,4:32:9:0.444:2	./.	./.	0/1:5,17:31:22:0.773:2	./.	./.	0/1:16,8:29:24:0.333:2	./.	0/1:8,4:31:12:0.333:2	./.
chr22	50943010	rs762670	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:32:10:0.400:2	0/1:6,5:31:11:0.455:2	./.	./.	0/1:6,18:29:24:0.750:2	./.	./.	0/1:18,7:30:25:0.280:2	./.	0/1:11,4:32:15:0.267:2	./.
chr22	50943232	rs8136495	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:6,4:32:10:0.400:2	./.	./.	./.	0/1:1,12:31:13:0.923:2	./.	./.	0/1:11,3:32:14:0.214:2	./.	0/1:5,3:31:8:0.375:2	./.
chr22	50944128	rs743615	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:31:9:1.00:2	0/1:123,4:31:127:0.031:2	./.	0/1:66,69:30:136:0.511:2	./.	./.	0/1:76,56:31:132:0.424:2	./.	0/1:0,83:30:83:1.00:2
chr22	50944163	rs128941	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:47,54:31:101:0.535:2	0/1:43,35:32:78:0.449:2	./.	0/1:0,165:31:165:1.00:2	0/1:72,113:31:185:0.611:2	0/1:1,180:31:181:0.994:2	0/1:1,156:31:157:0.994:2	0/1:93,97:31:190:0.511:2	0/1:0,170:32:170:1.00:2	0/1:60,55:31:115:0.478:2	0/1:59,58:31:117:0.496:2
chr22	50944600	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:30:69:0.058:2	./.	./.	./.
chr22	50945256	rs131824	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:30:10:1.00:2	0/1:22,28:30:50:0.560:2	0/1:37,41:31:78:0.526:2	0/1:51,36:30:87:0.414:2	./.	0/1:31,31:29:62:0.500:2	./.	0/1:0,41:31:41:1.00:2	0/1:0,18:30:18:1.00:2
chr22	50957619	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,4:31:76:0.053:2	./.	./.	./.
chr22	50960682	rs140524	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:27:4:1.00:2	./.	./.	0/1:39,27:30:66:0.409:2	./.	./.	./.	./.	0/1:0,44:29:44:1.00:2
chr22	50961169	rs131813	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,36:32:36:1.00:2	0/1:0,17:32:17:1.00:2	./.	0/1:34,19:32:53:0.358:2	0/1:37,13:31:50:0.260:2	0/1:0,50:32:50:1.00:2	0/1:0,37:32:37:1.00:2	0/1:31,25:31:56:0.446:2	0/1:0,48:33:48:1.00:2	0/1:17,23:30:40:0.575:2	0/1:0,26:31:26:1.00:2
chr22	50962208	rs12148	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:2,81:29:83:0.976:2	0/1:2,47:29:49:0.959:2	./.	0/1:66,54:29:120:0.450:2	0/1:122,68:30:190:0.358:2	0/1:57,69:29:126:0.548:2	0/1:0,136:30:136:1.00:2	0/1:85,79:29:164:0.482:2	0/1:1,135:29:136:0.993:2	0/1:59,37:29:96:0.385:2	./.
chr22	50962259	rs131811	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,46:30:106:0.434:2	./.	./.	./.	./.	0/1:48,43:30:91:0.473:2
chr22	50962782	rs140523	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,7:30:7:1.00:2	0/1:0,8:30:8:1.00:2	./.	0/1:6,3:28:9:0.333:2	0/1:4,9:29:13:0.692:2	./.	0/1:0,11:28:11:1.00:2	0/1:7,5:29:12:0.417:2	0/1:0,11:30:11:1.00:2	0/1:1,4:28:5:0.800:2	./.
chr22	50964236	rs11479	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:31:8:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:14,11:30:25:0.440:2
chr22	50969647	rs139023197	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:87,87:30:174:0.500:2	./.	./.	./.	./.	./.	./.
chr22	50988062	rs140519	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,28:31:29:0.966:2	0/1:0,15:31:15:1.00:2	./.	0/1:14,8:31:22:0.364:2	0/1:10,16:31:26:0.615:2	0/1:0,35:31:35:1.00:2	0/1:8,6:28:14:0.429:2	0/1:0,33:31:33:1.00:2	0/1:0,24:32:24:1.00:2	0/1:23,15:31:38:0.395:2	0/1:3,8:31:11:0.727:2
chr22	50988193	rs131779	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:26:10:0.400:2	0/1:6,9:25:15:0.600:2	0/1:0,3:22:3:1.00:2	0/1:4,5:25:9:0.556:2	0/1:0,5:25:5:1.00:2	0/1:0,4:29:4:1.00:2	0/1:2,6:24:8:0.750:2	0/1:4,5:30:9:0.556:2
chr22	50988695	rs5770887	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:31:13:0.538:2	./.	./.	./.	./.	./.	./.	./.	0/1:52,50:31:102:0.490:2
chr22	50989326	rs131778	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,74:32:74:1.00:2	0/1:0,48:32:48:1.00:2	./.	0/1:45,32:33:77:0.416:2	0/1:40,41:31:81:0.506:2	0/1:1,95:32:96:0.990:2	0/1:37,44:33:81:0.543:2	0/1:0,126:32:126:1.00:2	0/1:2,78:34:80:0.975:2	0/1:33,40:33:73:0.548:2	0/1:50,71:33:121:0.587:2
chr22	51009953	rs470117	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,29:32:29:1.00:2	0/1:0,11:32:11:1.00:2	./.	0/1:30,24:31:54:0.444:2	0/1:29,39:31:68:0.574:2	0/1:0,49:31:49:1.00:2	0/1:37,27:32:64:0.422:2	0/1:29,31:32:60:0.517:2	0/1:0,36:32:36:1.00:2	./.	0/1:26,13:32:39:0.333:2
chr22	51011348	rs34744246	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,36:30:95:0.379:2	./.
chr22	51011376	rs8142477	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,30:31:82:0.370:2	0/1:43,53:32:96:0.552:2
chr22	51012311	rs17848459	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,6:30:10:0.600:2	./.	./.	./.	./.	./.	./.	./.	0/1:52,57:31:109:0.523:2
chr22	51012854	rs76233096	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,36:32:92:0.396:2	./.
chr22	51014756	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:102,25:31:127:0.197:2	./.	./.	./.	./.	./.	./.	./.
chr22	51015838	rs3213445	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:30:8:0.500:2	./.	./.	./.	./.	./.	./.	./.	0/1:45,41:29:86:0.477:2
chr22	51041663	rs41282359	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,16:31:37:0.432:2	./.	./.	./.
chr22	51042599	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2
chr22	51043278	rs3219201	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.	0/1:0,4:31:4:1.00:2	0/1:0,8:30:8:1.00:2	./.	./.	0/1:0,3:31:3:1.00:2	./.	./.
chr22	51045190	rs1140555	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:32:16:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,28:31:28:1.00:2	0/1:5,13:31:18:0.722:2	0/1:0,12:29:12:1.00:2	0/1:9,7:30:16:0.438:2	0/1:6,6:28:13:0.500:2	0/1:12,10:32:22:0.455:2	./.	0/1:0,10:32:10:1.00:2
chr22	51045433	rs131736	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,50:32:50:1.00:2	0/1:0,16:31:16:1.00:2	0/1:2,6:31:8:0.750:2	0/1:0,62:31:62:1.00:2	0/1:38,38:31:76:0.500:2	0/1:0,47:31:47:1.00:2	0/1:33,36:31:69:0.522:2	0/1:59,45:31:104:0.433:2	0/1:32,30:32:62:0.484:2	./.	0/1:0,39:31:39:1.00:2
chr22	51048663	.	A	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,8:18:57:0.140:2	./.	0/1:53,9:18:62:0.145:2	./.	0/1:45,8:20:53:0.151:2	./.	0/1:40,9:19:49:0.184:2
chr22	51048721	rs14136	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,8:32:11:0.727:2	./.	./.	./.	./.	./.	./.	./.	0/1:29,35:33:64:0.547:2
chr22	51049217	rs112640312	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,24:33:39:0.615:2	./.	./.
chr22	51064039	rs743616	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:50,20:32:70:0.286:2	0/1:24,15:31:39:0.385:2	./.	0/1:55,36:32:91:0.396:2	0/1:1,84:32:85:0.988:2	0/1:0,104:31:104:1.00:2	./.	0/1:61,54:31:115:0.470:2	0/1:1,76:32:77:0.987:2	./.	0/1:36,42:31:78:0.538:2
chr22	51064068	rs6151425	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,44:32:95:0.463:2	./.	./.
chr22	51064416	rs2071421	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:34,23:31:57:0.404:2	0/1:16,18:32:34:0.529:2	./.	0/1:57,23:33:80:0.288:2	./.	./.	0/1:34,19:31:53:0.358:2	./.	./.	0/1:31,25:32:56:0.446:2	./.
chr22	51065361	rs6151415	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,38:30:38:1.00:2	./.	./.	./.	./.	./.	./.
chr22	51115074	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:32:68:0.059:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	51117580	rs9616915	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:19,9:30:28:0.321:2	./.	./.	./.	0/1:0,45:31:45:1.00:2	0/1:27,20:32:47:0.426:2	0/1:25,22:32:47:0.468:2	./.	0/1:13,13:32:26:0.500:2	0/1:1,22:29:23:0.957:2	0/1:14,5:29:19:0.263:2
chr22	51159595	rs376858991	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:34:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chr22	51182539	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:34:137:0.029:2	./.	./.
chr22	51182573	rs201614140	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:91,11:32:102:0.108:2	0/1:54,9:29:63:0.143:2	./.	0/1:162,21:30:184:0.115:2	./.	0/1:160,36:32:196:0.184:2	./.	./.	./.	./.	./.
chr22	51182578	rs147392791	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.
chr22	51182601	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:171,5:33:176:0.028:2	./.	./.	./.	./.	./.	./.
chr22	51183255	rs5771002	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,82:30:101:0.812:2	0/1:10,36:31:46:0.783:2	0/1:5,7:31:12:0.583:2	0/1:49,103:30:152:0.678:2	0/1:54,77:31:131:0.588:2	0/1:75,48:31:124:0.390:2	0/1:110,52:31:162:0.321:2	0/1:31,116:31:147:0.789:2	0/1:95,52:31:147:0.354:2	0/1:58,35:32:93:0.376:2	./.
chr22	51183266	rs200076103	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:81,10:32:91:0.110:2	./.	./.	0/1:123,17:32:140:0.121:2	./.	0/1:100,21:28:121:0.174:2	./.	./.	./.	./.	./.
chr22	51207462	rs200910858	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,51:29:194:0.263:2	./.	./.	./.	./.	./.
chr22	51214191	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:31:163:0.025:2	./.
chr22	51215186	rs200124671	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:67,4:28:71:0.056:2	./.	./.	0/1:98,5:30:103:0.049:2	./.	./.	./.	./.	./.	./.	0/1:95,12:30:107:0.112:2
chr22	51216356	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,4:32:174:0.023:2
chrX	200860	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,61:30:62:0.984:2	0/1:0,52:30:52:1.00:2	0/1:0,13:32:13:1.00:2	0/1:104,59:31:163:0.362:2	0/1:81,70:30:152:0.464:2	0/1:2,115:31:117:0.983:2	0/1:3,144:31:147:0.980:2	0/1:87,89:30:177:0.506:2	0/1:64,49:31:113:0.434:2	0/1:1,102:31:103:0.990:2	0/1:0,98:30:98:1.00:2
chrX	207362	.	C	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:65,35:31:100:0.350:2	0/1:38,22:31:60:0.367:2	0/1:0,24:32:24:1.00:2	./.	0/1:107,85:31:192:0.443:2	0/1:77,80:31:157:0.510:2	0/1:1,195:31:196:0.995:2	0/1:3,157:30:161:0.981:2	0/1:87,63:31:150:0.420:2	0/1:74,61:31:135:0.452:2	./.
chrX	215944	.	G	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,42:30:70:0.600:2	./.	0/1:34,41:30:75:0.547:2	./.	./.	./.	0/1:34,28:31:62:0.452:2	0/1:48,22:31:70:0.314:2
chrX	229542	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:19,18:31:37:0.486:2	0/1:12,18:32:30:0.600:2	./.	0/1:33,36:31:69:0.522:2	0/1:42,14:31:56:0.250:2	./.	./.	0/1:47,36:31:83:0.434:2	0/1:48,23:31:71:0.324:2	./.	./.
chrX	295132	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.
chrX	295231	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:26:4:0.750:2	./.
chrX	299360	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,16:29:36:0.457:2	./.	./.	0/1:7,7:32:14:0.500:2	0/1:5,5:27:10:0.500:2	0/1:8,17:28:25:0.680:2
chrX	299362	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,11:30:11:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,2:29:2:1.00:2	0/1:17,8:27:25:0.320:2	0/1:0,8:27:8:1.00:2	0/1:0,35:29:35:1.00:2	0/1:8,4:32:12:0.333:2	0/1:2,18:28:20:0.900:2	0/1:0,14:29:14:1.00:2	0/1:0,10:27:10:1.00:2	0/1:8,17:29:25:0.680:2
chrX	299591	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,114:33:115:0.991:2	0/1:0,64:33:64:1.00:2	0/1:0,15:34:15:1.00:2	0/1:90,89:32:179:0.497:2	0/1:0,178:33:178:1.00:2	0/1:0,174:33:174:1.00:2	0/1:93,82:34:175:0.469:2	0/1:2,162:33:164:0.988:2	0/1:0,162:33:162:1.00:2	0/1:0,118:33:118:1.00:2	0/1:56,58:32:115:0.509:2
chrX	322161	.	A	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:11,8:30:19:0.421:2	0/1:115,75:28:190:0.395:2	0/1:109,80:29:189:0.423:2	0/1:115,75:27:190:0.395:2	0/1:3,192:27:195:0.985:2	./.	0/1:112,85:28:197:0.431:2	0/1:106,83:28:189:0.439:2	0/1:1,182:27:183:0.995:2
chrX	322193	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:117,75:30:193:0.391:2	./.	0/1:102,87:29:189:0.460:2	./.	./.	./.	./.
chrX	322257	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,10:30:26:0.385:2	./.	./.	0/1:75,94:31:169:0.556:2	./.	./.	0/1:87,83:32:170:0.488:2	0/1:65,64:31:129:0.496:2	0/1:66,80:32:146:0.548:2
chrX	1314931	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,36:31:108:0.333:2	./.
chrX	1321326	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:11,6:32:17:0.353:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	1331495	.	G	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,47:29:85:0.553:2	./.	./.	./.	0/1:51,29:27:80:0.363:2	./.	0/1:24,34:26:58:0.586:2	0/1:0,72:28:72:1.00:2
chrX	1401646	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,68:31:157:0.433:2	./.	./.	0/1:94,66:33:160:0.413:2	0/1:109,70:32:179:0.391:2	./.	./.
chrX	1409247	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,39:31:100:0.390:2	./.	./.	./.	./.	./.	./.	./.
chrX	1422868	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:28,40:31:68:0.588:2	0/1:107,85:31:192:0.443:2	0/1:99,73:31:172:0.424:2	0/1:106,88:31:194:0.454:2	0/1:114,71:31:185:0.384:2	./.	0/1:100,95:32:195:0.487:2	0/1:104,77:32:181:0.425:2	./.
chrX	1428421	.	G	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:41,38:32:79:0.481:2	0/1:25,21:32:46:0.457:2	./.	0/1:69,47:33:116:0.405:2	./.	./.	./.	0/1:51,69:33:120:0.575:2	./.	./.	./.
chrX	1460679	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,83:33:182:0.456:2	./.	./.	./.
chrX	1460740	.	A	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,74:32:74:1.00:2	0/1:1,56:32:57:0.982:2	0/1:0,19:32:19:1.00:2	./.	0/1:2,147:32:149:0.987:2	0/1:0,109:32:109:1.00:2	0/1:2,147:32:149:0.987:2	0/1:0,148:32:148:1.00:2	0/1:0,121:34:121:1.00:2	0/1:1,118:32:119:0.992:2	0/1:0,110:33:110:1.00:2
chrX	1467404	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,71:31:162:0.438:2	./.	0/1:103,75:32:178:0.421:2	./.	./.	./.
chrX	1471117	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,31:30:54:0.574:2	./.	./.	./.	./.	./.
chrX	1471332	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,4:33:153:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	1497644	.	G	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:40,35:32:75:0.467:2	0/1:29,22:31:51:0.431:2	./.	./.	./.	0/1:51,54:32:105:0.514:2	./.	0/1:69,58:32:127:0.457:2	./.	0/1:27,29:32:56:0.518:2	./.
chrX	1508324	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,19:30:42:0.452:2	./.	0/1:0,48:30:48:1.00:2	./.	0/1:22,31:31:53:0.585:2	./.	./.	0/1:7,10:31:17:0.588:2
chrX	1508583	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:65,56:27:121:0.463:2	./.	0/1:1,138:27:139:0.993:2	./.	0/1:81,65:27:146:0.445:2	./.	./.	0/1:51,46:25:97:0.474:2
chrX	1531648	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:101,81:32:182:0.445:2	./.	0/1:103,89:32:192:0.464:2	0/1:96,96:32:192:0.500:2	0/1:120,72:33:192:0.375:2	./.	./.
chrX	1531687	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,77:29:148:0.524:2	./.
chrX	1537002	.	C	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,6:31:11:0.545:2	0/1:47,38:31:85:0.447:2	0/1:38,55:30:93:0.591:2	0/1:28,33:30:61:0.541:2	0/1:0,100:30:100:1.00:2	./.	0/1:38,38:31:76:0.500:2	0/1:1,85:30:86:0.988:2	0/1:48,35:30:83:0.422:2
chrX	1537881	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,17:31:27:0.630:2	./.
chrX	1537953	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,34:33:34:1.00:2	0/1:0,23:32:23:1.00:2	./.	0/1:18,33:33:51:0.647:2	0/1:31,32:32:63:0.508:2	0/1:39,22:32:61:0.361:2	./.	0/1:0,69:32:69:1.00:2	0/1:47,24:32:71:0.338:2	./.	0/1:23,15:32:38:0.395:2
chrX	1540706	.	A	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,173:32:177:0.977:2	0/1:1,186:32:187:0.995:2	./.	0/1:101,86:32:188:0.460:2	0/1:118,78:32:196:0.398:2	./.	./.	0/1:4,179:33:183:0.978:2	0/1:109,74:33:184:0.404:2	./.	0/1:88,91:32:179:0.508:2
chrX	1546792	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	0/1:0,4:24:4:1.00:2	0/1:0,6:28:6:1.00:2	./.	0/1:1,8:28:9:0.889:2	0/1:0,3:30:3:1.00:2	./.
chrX	1546842	.	A	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,18:32:18:1.00:2	0/1:0,11:32:11:1.00:2	./.	0/1:12,6:32:18:0.333:2	0/1:11,4:32:15:0.267:2	./.	./.	0/1:1,13:31:14:0.929:2	0/1:12,6:31:18:0.333:2	./.	0/1:3,9:32:12:0.750:2
chrX	1546876	.	A	G	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:34:4:1.00:2	0/1:6,13:31:19:0.684:2	./.	0/1:1,26:32:27:0.963:2	0/1:0,14:33:14:1.00:2	./.	0/1:10,12:35:22:0.545:2	0/1:0,16:31:16:1.00:2	0/1:10,7:34:17:0.412:2
chrX	1546954	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,16:31:32:0.500:2	./.	./.	./.	./.	./.
chrX	1551173	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,4:31:10:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	1553907	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:60,57:32:117:0.487:2	0/1:32,38:32:70:0.543:2	./.	0/1:73,90:31:163:0.552:2	./.	./.	./.	./.	./.	./.	./.
chrX	1554649	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,42:28:94:0.447:2	0/1:30,29:29:59:0.492:2	0/1:18,9:28:27:0.333:2	0/1:4,139:29:143:0.972:2	0/1:76,51:29:127:0.402:2	./.	0/1:74,57:29:131:0.435:2	0/1:1,133:28:134:0.993:2	0/1:84,53:30:137:0.387:2	./.	0/1:76,55:27:131:0.420:2
chrX	1554655	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,41:28:92:0.446:2	0/1:27,28:28:56:0.509:2	0/1:17,10:29:27:0.370:2	0/1:4,133:28:137:0.971:2	0/1:65,45:27:110:0.409:2	./.	0/1:67,49:29:116:0.422:2	0/1:1,119:28:120:0.992:2	0/1:84,50:29:134:0.373:2	./.	0/1:75,50:28:125:0.400:2
chrX	1713021	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:18,10:30:28:0.357:2	./.	./.	./.	0/1:1,31:29:32:0.969:2	0/1:0,37:31:37:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,29:32:29:1.00:2
chrX	1718360	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:28:5:1.00:2	./.	0/1:0,2:31:2:1.00:2	0/1:0,4:30:4:1.00:2	./.	./.
chrX	1719897	.	C	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:27:5:1.00:2	./.	0/1:0,3:27:3:1.00:2	0/1:0,4:28:4:1.00:2	0/1:0,2:28:2:1.00:2	0/1:0,2:27:2:1.00:2
chrX	1720289	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.
chrX	1755404	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,89:31:194:0.459:2	./.	./.	./.	./.	./.	./.
chrX	1761761	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,79:31:186:0.425:2	./.	./.	./.
chrX	2139186	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:90,75:33:165:0.455:2	0/1:59,39:32:98:0.398:2	0/1:0,25:31:25:1.00:2	0/1:100,86:31:186:0.462:2	./.	0/1:90,78:32:168:0.464:2	./.	./.	0/1:100,87:33:187:0.465:2	./.	0/1:97,79:31:176:0.449:2
chrX	2139200	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,58:29:129:0.450:2	0/1:61,33:27:94:0.351:2	0/1:0,27:30:27:1.00:2	0/1:0,175:29:175:1.00:2	0/1:1,174:28:175:0.994:2	0/1:84,79:29:163:0.485:2	0/1:0,182:28:182:1.00:2	0/1:0,185:29:185:1.00:2	0/1:0,168:29:168:1.00:2	0/1:0,138:29:138:1.00:2	0/1:0,159:28:159:1.00:2
chrX	2161129	.	C	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:32,28:33:60:0.467:2	0/1:20,21:33:41:0.512:2	./.	0/1:49,34:32:83:0.410:2	0/1:0,53:32:53:1.00:2	0/1:51,39:33:90:0.433:2	0/1:0,42:32:42:1.00:2	0/1:2,77:31:79:0.975:2	0/1:31,38:33:69:0.551:2	0/1:0,40:31:40:1.00:2	0/1:24,27:33:51:0.529:2
chrX	2184897	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,64:31:180:0.356:2
chrX	2343343	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,22:31:50:0.440:2	./.
chrX	2408437	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,20:29:35:0.571:2	./.	0/1:9,18:31:27:0.667:2	0/1:23,15:32:38:0.395:2	./.	./.
chrX	2609717	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:36:3:0.667:2	./.	./.
chrX	2609983	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:27:2:1.00:2	./.	./.	0/1:0,3:25:3:1.00:2	./.	./.	0/1:0,2:28:2:1.00:2	0/1:0,4:25:4:1.00:2
chrX	2632482	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,19:33:19:1.00:2	0/1:99,62:33:161:0.385:2	0/1:67,54:32:121:0.446:2	0/1:0,151:32:151:1.00:2	0/1:2,81:33:83:0.976:2	0/1:1,140:33:141:0.993:2	0/1:122,75:33:197:0.381:2	0/1:89,80:32:169:0.473:2	./.
chrX	2644302	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,49:32:90:0.544:2	./.	./.	0/1:29,42:34:71:0.592:2	./.	./.
chrX	2645366	.	G	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:75,44:29:119:0.370:2	0/1:22,34:29:56:0.607:2	0/1:14,8:32:22:0.364:2	0/1:64,76:29:140:0.543:2	./.	0/1:91,76:29:167:0.455:2	0/1:2,112:30:114:0.982:2	0/1:82,79:30:161:0.491:2	0/1:85,70:30:155:0.452:2	0/1:52,59:30:111:0.532:2	0/1:85,56:29:141:0.397:2
chrX	2656261	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,87:30:194:0.448:2	./.	./.	./.	./.
chrX	2656283	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,82:32:192:0.427:2	./.	./.	./.	./.
chrX	2700157	rs5939319	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,9:31:9:1.00:2	0/1:1,40:31:41:0.976:2	./.	./.	./.	./.	./.	0/1:38,36:31:74:0.486:2	./.
chrX	2715425	rs4484858	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,24:31:24:1.00:2	0/1:0,25:30:25:1.00:2	0/1:0,9:30:9:1.00:2	0/1:3,15:31:18:0.833:2	0/1:1,19:31:20:0.950:2	0/1:0,25:30:25:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,40:31:40:1.00:2	./.	0/1:22,19:30:41:0.463:2	0/1:0,14:31:14:1.00:2
chrX	2724760	rs3749988	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,167:33:167:1.00:2	0/1:0,165:32:165:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,172:32:172:1.00:2	0/1:0,110:31:110:1.00:2	0/1:0,162:32:162:1.00:2	0/1:0,141:32:141:1.00:2	0/1:0,186:32:186:1.00:2	0/1:0,180:33:180:1.00:2	0/1:0,164:32:164:1.00:2	0/1:0,181:32:182:1.00:2
chrX	2748253	rs6642032	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,161:32:161:1.00:2	0/1:0,88:32:88:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,92:33:92:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,90:33:90:1.00:2	0/1:1,163:32:164:0.994:2	0/1:0,194:32:194:1.00:2	0/1:0,78:34:78:1.00:2	0/1:0,143:32:143:1.00:2	0/1:0,54:32:54:1.00:2
chrX	2777985	rs2306734	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:56,60:31:117:0.517:2	0/1:35,45:32:80:0.563:2	0/1:0,18:29:18:1.00:2	./.	0/1:0,62:30:63:1.00:2	./.	0/1:2,147:31:150:0.987:2	./.	0/1:0,85:31:86:1.00:2	0/1:67,50:30:117:0.427:2	0/1:0,70:30:70:1.00:2
chrX	2779570	rs2306735	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,25:28:25:1.00:2	0/1:0,12:28:12:1.00:2	./.	./.	0/1:0,14:29:14:1.00:2	./.	0/1:0,25:29:26:1.00:2	./.	0/1:0,11:28:11:1.00:2	0/1:11,9:27:20:0.450:2	./.
chrX	2827966	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,4:27:54:0.074:2	./.	./.	./.	./.	./.	./.	./.
chrX	2832739	rs34494682	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,55:32:61:0.902:2	./.	0/1:6,60:31:66:0.909:2
chrX	2832742	rs211648	G	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,60:33:123:0.488:2	0/1:26,25:33:51:0.490:2	0/1:9,8:33:17:0.471:2	0/1:62,11:33:73:0.151:2	0/1:1,53:31:54:0.981:2	0/1:54,13:31:67:0.194:2	0/1:65,36:32:101:0.356:2	./.	0/1:0,61:33:61:1.00:2	0/1:47,57:33:104:0.548:2	0/1:0,66:33:66:1.00:2
chrX	2832771	rs78142040	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,35:32:108:0.324:2	0/1:75,24:31:99:0.242:2	0/1:75,31:31:106:0.292:2	./.	./.	0/1:73,23:32:96:0.240:2	./.	0/1:92,23:31:115:0.200:2
chrX	2832787	rs73632954	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,39:33:113:0.345:2	0/1:81,30:32:111:0.270:2	0/1:70,37:32:107:0.346:2	./.	./.	0/1:76,31:33:107:0.290:2	./.	0/1:100,29:33:129:0.225:2
chrX	2833638	rs370769167	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:68,5:33:73:0.068:2	./.	0/1:51,8:33:59:0.136:2	./.	./.	./.	./.	./.
chrX	2833643	rs115332247	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,6:33:72:0.083:2	0/1:63,4:32:67:0.060:2	0/1:50,8:32:58:0.138:2	./.	./.	0/1:75,6:33:81:0.074:2	./.	./.
chrX	2835863	rs78034736	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,48:31:97:0.495:2	0/1:63,62:31:125:0.496:2	0/1:67,38:31:105:0.362:2	./.	./.	0/1:57,31:32:88:0.352:2	./.	0/1:65,36:31:101:0.356:2
chrX	2835964	rs73632972	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,27:32:90:0.300:2	0/1:51,20:31:71:0.282:2	0/1:60,26:31:86:0.302:2	./.	./.	0/1:63,39:33:102:0.382:2	./.	0/1:60,39:32:99:0.394:2
chrX	2835985	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,4:27:52:0.077:2	./.	0/1:45,6:30:51:0.118:2	./.	./.	0/1:53,5:34:58:0.086:2	./.	0/1:46,11:30:57:0.193:2
chrX	2835989	rs143238998	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,5:33:50:0.100:2	./.	./.	./.	./.	0/1:40,7:32:47:0.149:2
chrX	2836037	rs211653	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:20,13:32:33:0.394:2	0/1:16,4:32:20:0.200:2	./.	./.	0/1:1,19:32:20:0.950:2	./.	./.	./.	./.	0/1:17,11:32:28:0.393:2	./.
chrX	2836060	rs113318393	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:29:10:0.300:2	./.	./.	./.	./.	./.
chrX	2836084	rs73632973	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,6:34:23:0.261:2	./.	0/1:7,4:28:11:0.364:2	./.	./.	./.	./.	./.
chrX	2836138	rs73632974	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:43,16:31:59:0.271:2	0/1:35,9:31:44:0.205:2	0/1:37,14:29:51:0.275:2	./.	./.	0/1:33,9:32:42:0.214:2	./.	0/1:31,4:32:35:0.114:2
chrX	2836181	rs73632975	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,13:32:74:0.176:2	0/1:68,10:33:78:0.128:2	0/1:56,14:31:70:0.200:2	./.	./.	0/1:51,9:30:60:0.150:2	./.	./.
chrX	2836184	rs73632976	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,13:31:73:0.178:2	0/1:68,10:32:78:0.128:2	0/1:56,14:30:70:0.200:2	./.	./.	0/1:51,10:27:61:0.164:2	./.	./.
chrX	2836211	rs73632977	A	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,8:28:72:0.111:2	0/1:63,5:32:68:0.074:2	0/1:49,8:30:57:0.140:2	./.	./.	0/1:48,6:32:54:0.111:2	./.	./.
chrX	2836238	rs73632978	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,6:29:56:0.107:2	./.	0/1:34,6:30:40:0.150:2	./.	./.	0/1:37,4:31:41:0.098:2	./.	./.
chrX	2852915	rs11055	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,10:31:25:0.400:2	./.	./.	./.	./.	./.	./.	0/1:69,60:31:130:0.465:2	./.
chrX	2852951	rs11222	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:84,83:30:167:0.497:2	0/1:49,50:30:99:0.505:2	0/1:12,9:28:21:0.429:2	0/1:0,74:29:74:1.00:2	./.	0/1:0,73:29:73:1.00:2	0/1:98,67:29:165:0.406:2	0/1:2,161:29:163:0.988:2	0/1:0,85:30:85:1.00:2	0/1:1,110:30:111:0.991:2	./.
chrX	2856155	rs35143646	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,85:31:159:0.535:2	0/1:72,40:31:112:0.357:2	0/1:16,18:30:34:0.529:2	0/1:1,128:30:129:0.992:2	./.	0/1:3,128:30:131:0.977:2	0/1:79,61:30:140:0.436:2	0/1:4,110:31:114:0.965:2	0/1:2,138:31:140:0.986:2	0/1:0,129:31:129:1.00:2	./.
chrX	2867413	rs17325750	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:53,50:33:103:0.485:2	0/1:35,36:32:71:0.507:2	./.	./.	./.	0/1:0,52:32:52:1.00:2	./.	./.	./.	./.	./.
chrX	2876417	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:32:143:0.028:2	./.	./.	./.	./.
chrX	2876422	rs35718384	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,66:29:127:0.520:2	./.	./.	./.	./.
chrX	2928088	rs148011020	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,103:31:198:0.520:2	./.	./.	./.	./.
chrX	2928170	rs77183343	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,57:33:101:0.564:2	./.	./.	./.	./.
chrX	2936675	rs200903295	T	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:105,25:14:130:0.192:2	./.	./.	0/1:58,14:20:72:0.194:2	0/1:45,16:14:61:0.262:2	0/1:62,17:18:79:0.215:2	0/1:101,33:16:135:0.246:2	0/1:106,31:16:139:0.226:2	0/1:69,17:13:86:0.198:2	0/1:101,26:14:127:0.205:2	0/1:66,20:19:86:0.233:2
chrX	2942109	rs5939407	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:58,59:33:117:0.504:2	0/1:36,29:33:65:0.446:2	./.	0/1:2,47:33:49:0.959:2	0/1:2,48:32:50:0.960:2	0/1:0,59:32:59:1.00:2	0/1:65,53:33:118:0.449:2	0/1:49,47:33:96:0.490:2	0/1:0,59:34:59:1.00:2	0/1:46,54:32:100:0.540:2	0/1:0,67:33:68:1.00:2
chrX	2945477	rs61751925	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,11:32:23:0.478:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	3002475	rs112461718	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,74:28:167:0.443:2	./.
chrX	3002515	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:30:133:0.030:2	./.	./.	./.	./.	./.
chrX	3002687	rs5983003	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:42,23:32:65:0.354:2	0/1:14,11:32:25:0.440:2	./.	0/1:0,20:30:20:1.00:2	./.	0/1:0,14:29:14:1.00:2	./.	0/1:21,25:31:46:0.543:2	0/1:0,24:33:24:1.00:2	0/1:34,19:31:53:0.358:2	0/1:0,41:31:42:1.00:2
chrX	3028260	rs17051478	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,71:31:73:0.973:2	./.	./.	0/1:119,77:31:196:0.393:2	./.	./.	0/1:64,69:31:133:0.519:2	./.
chrX	3028289	rs5983011	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,52:32:54:0.963:2	./.	./.	0/1:94,62:32:156:0.397:2	./.	./.	0/1:72,64:32:137:0.471:2	./.
chrX	3030403	rs1052638	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:29:5:0.600:2	./.	./.	./.	0/1:29,18:29:47:0.383:2	./.	./.	./.	./.
chrX	3030426	rs10522044	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,46:30:46:1.00:2	./.	./.	0/1:45,35:29:80:0.438:2	./.	./.	0/1:43,32:29:75:0.427:2	./.
chrX	3189936	rs12559033	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,34:31:69:0.493:2	0/1:33,16:31:49:0.327:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,42:31:42:1.00:2
chrX	3228144	rs112101834	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,157:29:161:0.975:2	./.	0/1:109,83:29:192:0.432:2	./.	./.	./.	./.
chrX	3228411	rs1635233	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:85,99:31:184:0.538:2	0/1:64,81:32:145:0.559:2	0/1:0,59:31:59:1.00:2	0/1:17,142:31:159:0.893:2	0/1:26,167:31:193:0.865:2	./.	0/1:1,175:31:176:0.994:2	0/1:184,5:31:189:0.026:2	./.	./.	0/1:3,130:32:133:0.977:2
chrX	3228653	rs1726208	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:26:4:0.750:2	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2
chrX	3228663	rs1635234	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:105,4:31:109:0.037:2	./.	0/1:0,3:33:3:1.00:2	0/1:1,9:32:10:0.900:2	0/1:2,3:29:5:0.600:2	./.	0/1:0,10:32:10:1.00:2	./.	./.	./.	0/1:0,3:33:3:1.00:2
chrX	3228891	rs1635235	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:112,72:29:184:0.391:2	0/1:66,59:28:125:0.472:2	0/1:0,35:30:35:1.00:2	0/1:0,102:29:102:1.00:2	0/1:0,179:28:179:1.00:2	./.	./.	./.	./.	./.	0/1:1,135:28:136:0.993:2
chrX	3228973	rs200992239	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:151,4:32:155:0.026:2	./.	./.	./.	./.	./.	./.	./.
chrX	3235724	rs1635242	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:41,29:32:70:0.414:2	0/1:18,26:31:44:0.591:2	0/1:0,11:31:11:1.00:2	0/1:0,45:32:45:1.00:2	0/1:1,45:32:46:0.978:2	./.	0/1:1,88:31:89:0.989:2	0/1:94,7:31:101:0.069:2	./.	./.	0/1:0,42:32:42:1.00:2
chrX	3236028	rs5982697	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,28:30:31:0.903:2	./.	0/1:34,33:30:68:0.493:2	./.	./.	./.	./.
chrX	3238167	rs1635245	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,54:32:128:0.422:2	0/1:40,40:32:80:0.500:2	0/1:0,17:34:17:1.00:2	0/1:0,63:32:63:1.00:2	./.	./.	0/1:76,50:32:126:0.397:2	./.	./.	./.	0/1:0,73:32:73:1.00:2
chrX	3238733	rs1974522	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,61:32:105:0.581:2	0/1:35,28:31:63:0.444:2	0/1:0,15:30:15:1.00:2	0/1:3,55:31:58:0.948:2	./.	./.	0/1:46,31:32:77:0.403:2	./.	./.	./.	0/1:3,54:31:57:0.947:2
chrX	3239545	rs1726199	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,34:32:65:0.523:2	0/1:24,17:31:41:0.415:2	0/1:0,4:31:4:1.00:2	0/1:0,23:32:23:1.00:2	0/1:0,26:31:26:1.00:2	./.	0/1:0,35:31:35:1.00:2	0/1:56,6:29:62:0.097:2	./.	./.	0/1:0,49:31:49:1.00:2
chrX	3239979	rs3813167	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,147:31:152:0.967:2	./.	0/1:105,91:31:196:0.464:2	./.	./.	./.	./.
chrX	3240215	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:33:194:0.021:2	./.	./.	./.	./.
chrX	3240343	rs1635246	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:106,83:30:189:0.439:2	0/1:91,69:31:160:0.431:2	0/1:0,22:29:22:1.00:2	0/1:0,125:30:126:1.00:2	./.	./.	0/1:102,95:30:197:0.482:2	./.	./.	./.	0/1:0,140:30:140:1.00:2
chrX	3240619	rs145430904	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,102:32:104:0.981:2	./.	./.	./.	./.	./.
chrX	3240650	rs145033582	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,17:32:120:0.142:2	./.	./.	./.	./.	./.	./.	./.
chrX	3241050	rs1635247	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,62:32:133:0.466:2	0/1:37,42:32:79:0.532:2	0/1:0,21:32:21:1.00:2	0/1:0,46:31:46:1.00:2	./.	./.	0/1:60,64:33:124:0.516:2	./.	./.	./.	0/1:0,71:33:71:1.00:2
chrX	3241256	rs5983119	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:63,47:31:110:0.427:2	0/1:37,29:32:66:0.439:2	0/1:0,16:32:16:1.00:2	0/1:0,50:32:50:1.00:2	0/1:1,50:31:51:0.980:2	./.	0/1:1,94:32:95:0.989:2	./.	./.	./.	0/1:0,64:32:64:1.00:2
chrX	3241284	rs1635248	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,35:32:96:0.368:2	0/1:33,26:32:59:0.441:2	0/1:0,15:32:15:1.00:2	0/1:0,39:32:39:1.00:2	./.	./.	0/1:52,30:31:82:0.366:2	./.	./.	./.	0/1:0,54:32:54:1.00:2
chrX	3241317	rs1635249	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:47,32:28:79:0.405:2	0/1:23,18:29:41:0.439:2	0/1:0,10:29:10:1.00:2	0/1:0,26:28:26:1.00:2	0/1:1,36:28:37:0.973:2	./.	0/1:2,54:29:56:0.964:2	./.	./.	./.	0/1:0,37:29:37:1.00:2
chrX	3241791	rs1635250	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:112,81:31:193:0.420:2	0/1:81,49:31:130:0.377:2	0/1:0,23:30:23:1.00:2	0/1:1,145:30:146:0.993:2	./.	./.	0/1:111,87:30:198:0.439:2	./.	./.	./.	0/1:0,128:31:128:1.00:2
chrX	3592725	rs10871864	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:99,73:33:172:0.424:2	0/1:66,47:32:113:0.416:2	0/1:20,17:32:37:0.459:2	./.	./.	0/1:4,155:32:160:0.975:2	0/1:1,189:33:190:0.995:2	0/1:3,153:33:156:0.981:2	0/1:1,119:34:120:0.992:2	0/1:0,164:33:164:1.00:2	./.
chrX	3592797	rs56037462	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,57:32:147:0.388:2	./.	./.	./.
chrX	3631167	rs3752362	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,10:31:10:1.00:2	./.	./.	./.	./.	./.	0/1:4,3:30:7:0.429:2	./.	./.	0/1:5,10:27:15:0.667:2	./.
chrX	3736489	rs1133336	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,16:31:43:0.372:2	0/1:18,11:31:29:0.379:2	0/1:0,4:32:4:1.00:2	0/1:0,18:31:18:1.00:2	./.	0/1:0,24:31:24:1.00:2	0/1:2,36:31:38:0.947:2	0/1:37,22:32:59:0.373:2	0/1:0,20:31:20:1.00:2	0/1:24,18:32:42:0.429:2	0/1:1,24:31:25:0.960:2
chrX	5811530	rs3747334	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,7:32:163:0.043:2	./.
chrX	5811532	rs3747333	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,7:31:163:0.043:2	./.
chrX	5821786	rs7049300	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,75:32:187:0.401:2	./.
chrX	6069341	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:87,5:32:92:0.054:2	./.	./.	./.	./.	./.	./.
chrX	6069349	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:104,4:30:108:0.037:2	./.	./.	./.	./.	./.	./.
chrX	6451791	rs74393938	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:130,31:29:161:0.193:2	./.	./.	./.	./.	./.	0/1:146,30:30:176:0.170:2	0/1:162,19:29:181:0.105:2
chrX	6451796	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:172,4:35:176:0.023:2	./.	./.	./.	./.	./.	0/1:175,4:33:179:0.022:2	./.	./.	./.
chrX	6451799	rs5989511	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:33:179:0.022:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	6451804	rs148748680	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,127:33:147:0.864:2	./.	./.	./.	./.	./.
chrX	6451826	rs144497136	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,6:28:190:0.032:2	./.	./.	./.
chrX	6451834	rs146638597	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:170,5:31:176:0.029:2	./.	./.	./.	./.	./.	./.	./.
chrX	6451856	rs75344159	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,40:30:183:0.219:2	./.	./.
chrX	6451864	rs143093189	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:85,87:31:172:0.506:2	0/1:83,74:30:157:0.471:2	0/1:30,29:31:59:0.492:2	0/1:75,97:32:172:0.564:2	0/1:138,51:32:189:0.270:2	0/1:96,51:30:147:0.347:2	0/1:154,33:32:187:0.176:2	0/1:134,49:30:183:0.268:2	0/1:144,34:31:178:0.191:2	0/1:127,57:31:184:0.310:2	0/1:106,63:31:170:0.373:2
chrX	6451869	rs35874450	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:96,72:28:168:0.429:2	0/1:101,53:30:157:0.344:2	0/1:36,14:29:50:0.280:2	0/1:117,55:30:172:0.320:2	./.	0/1:87,59:31:146:0.404:2	./.	0/1:134,40:29:174:0.230:2	0/1:144,31:30:175:0.177:2	0/1:146,32:29:178:0.180:2	0/1:133,26:30:159:0.164:2
chrX	6451872	rs77148209	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,4:32:50:0.080:2	./.	./.	./.	./.	./.	0/1:87,90:32:177:0.508:2	./.	./.
chrX	6451873	rs147419762	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,8:28:175:0.046:2	./.	./.
chrX	6451886	rs143802324	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,20:32:162:0.123:2	./.	./.
chrX	6451894	rs150611380	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,8:33:148:0.054:2	./.	./.
chrX	6451899	rs139708269	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:31:169:0.024:2	./.	./.	./.	./.
chrX	6451924	rs200193382	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:33:172:0.023:2	./.	./.
chrX	6451929	rs200552602	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:109,72:30:181:0.398:2	0/1:105,52:31:157:0.331:2	0/1:21,10:30:31:0.323:2	0/1:104,63:29:167:0.377:2	./.	0/1:79,64:30:143:0.448:2	0/1:173,6:31:179:0.034:2	0/1:100,91:30:191:0.476:2	0/1:68,102:30:170:0.600:2	0/1:140,41:29:183:0.227:2	0/1:132,44:29:176:0.250:2
chrX	6451932	rs200714581	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,4:32:31:0.129:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	6451959	.	C	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:160,5:29:167:0.030:2	0/1:34,5:32:39:0.128:2	0/1:168,8:28:177:0.045:2	0/1:99,19:32:118:0.161:2	./.	0/1:163,22:31:185:0.119:2	./.	./.	./.	0/1:163,5:31:168:0.030:2
chrX	6451962	rs139657007	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:158,8:19:166:0.048:2	./.	0/1:163,9:22:173:0.052:2	./.	./.	0/1:175,8:23:183:0.044:2	./.	./.	./.	./.
chrX	6451984	rs141442978	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:126,35:32:161:0.217:2	0/1:107,23:32:130:0.177:2	0/1:28,7:33:35:0.200:2	0/1:101,18:32:119:0.151:2	0/1:115,9:30:124:0.073:2	0/1:54,17:33:71:0.239:2	0/1:160,17:32:177:0.096:2	0/1:119,33:29:152:0.217:2	0/1:100,21:32:122:0.174:2	0/1:146,13:31:159:0.082:2	0/1:108,14:32:122:0.115:2
chrX	6451989	rs200148990	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,15:29:117:0.128:2	./.	./.
chrX	6451993	rs201071379	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,14:27:150:0.093:2	0/1:119,7:28:127:0.056:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	6452197	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,28:31:173:0.162:2	./.	0/1:183,11:31:194:0.057:2
chrX	6452450	rs201088166	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,10:30:76:0.133:2	0/1:47,10:32:57:0.175:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	6452495	rs199869063	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,12:30:120:0.100:2	./.
chrX	6452524	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,15:32:168:0.089:2	./.	./.	./.
chrX	6995315	rs2379206	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,95:32:95:1.00:2	0/1:0,54:32:54:1.00:2	./.	0/1:0,86:32:86:1.00:2	0/1:0,78:32:78:1.00:2	./.	0/1:96,56:32:152:0.368:2	0/1:104,90:32:194:0.464:2	./.	0/1:59,51:32:110:0.464:2	./.
chrX	6995417	rs2379207	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:35,26:30:61:0.426:2	0/1:25,25:31:50:0.500:2	./.	./.	./.	./.	0/1:76,42:29:119:0.356:2	./.	./.	./.	./.
chrX	6995438	rs1803675	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:34,28:30:62:0.452:2	0/1:24,22:30:46:0.478:2	./.	./.	./.	./.	0/1:83,46:29:129:0.357:2	./.	./.	./.	./.
chrX	7023678	rs1131197	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:75,77:32:152:0.507:2	0/1:40,28:32:68:0.412:2	./.	./.	./.	./.	0/1:71,76:31:147:0.517:2	./.	./.	./.	./.
chrX	7811251	rs146106202	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,3:31:22:0.136:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	7811259	rs140123807	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:129,51:33:181:0.283:2	0/1:95,26:31:121:0.215:2	./.	./.	./.	./.	./.	0/1:142,51:32:193:0.264:2	./.	./.	./.
chrX	7811288	rs150891675	C	G,A	.	PASS	AC=2,2;AF=0.167,0.167;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant8-variant10-variant11	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	0/2:32:180:0.061:2	0/2:31:137:0.088:2	0/1:31:31:0.129:2	./.	./.	./.	./.	./.	./.	0/1:32:176:0.217:2	./.
chrX	7811333	rs139420867	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,45:32:165:0.273:2	0/1:91,24:32:115:0.209:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	7811554	rs200750165	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:83,5:31:88:0.057:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	7811586	rs150071100	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,14:32:87:0.161:2	0/1:102,35:30:137:0.255:2	0/1:49,42:32:91:0.462:2
chrX	7811645	rs6639946	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:3,5:33:8:0.625:2	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	./.	./.	./.	./.
chrX	7811747	rs80291436	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,4:31:6:0.667:2	0/1:0,8:28:8:1.00:2	./.	./.	./.	0/1:61,30:31:91:0.330:2	./.	./.	./.	0/1:53,19:29:72:0.264:2	./.
chrX	7811790	rs200229312	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,6:29:27:0.222:2	0/1:12,4:30:16:0.250:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	7811799	rs138805744	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,3:28:9:0.333:2	./.	0/1:31,4:34:35:0.114:2	./.	./.	./.	./.
chrX	7811824	rs1637792	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,4:31:35:0.114:2	./.	0/1:60,10:33:70:0.143:2	./.	./.	./.	./.
chrX	7811859	rs200761534	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,20:32:114:0.177:2	./.	./.
chrX	7811881	rs147159452	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,28:27:176:0.159:2	./.	0/1:71,8:26:79:0.101:2
chrX	7811884	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,5:30:104:0.048:2	./.	./.	./.	./.	./.	./.	0/1:74,8:32:82:0.098:2
chrX	7811889	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,7:30:32:0.219:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	7811910	rs139523735	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,22:28:178:0.124:2	./.	./.
chrX	7811911	rs149701617	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,17:28:44:0.386:2	./.	./.	./.	./.	./.	0/1:129,50:30:179:0.279:2	./.	./.
chrX	7811919	.	G	A	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:162,24:29:186:0.129:2	0/1:155,13:26:168:0.077:2	./.	0/1:98,52:31:150:0.347:2	0/1:88,27:30:115:0.235:2	0/1:183,9:28:192:0.047:2	0/1:172,20:31:194:0.104:2	0/1:184,9:32:193:0.047:2	0/1:171,8:27:179:0.045:2	0/1:161,35:31:196:0.179:2	0/1:61,34:30:95:0.358:2
chrX	7811941	rs148889078	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,7:23:185:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	7811971	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,5:32:136:0.037:2	./.	./.
chrX	7811974	rs146519163	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:181,6:26:187:0.032:2	0/1:74,13:32:87:0.149:2	0/1:143,42:32:185:0.227:2	0/1:30,121:31:151:0.801:2	./.	0/1:152,36:32:188:0.191:2	0/1:177,6:33:184:0.033:2	./.	0/1:178,9:31:187:0.048:2	0/1:111,41:30:152:0.270:2
chrX	7811979	rs141165637	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,15:32:188:0.080:2	0/1:115,11:33:126:0.087:2	./.	./.
chrX	7812017	rs78342118	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,157:33:158:0.994:2	0/1:0,150:32:150:1.00:2	0/1:64,54:32:118:0.458:2	0/1:4,175:32:179:0.978:2	0/1:3,177:32:180:0.983:2	0/1:175,15:31:190:0.079:2	0/1:161,30:33:191:0.157:2	0/1:139,50:32:189:0.265:2	0/1:10,174:33:184:0.946:2	0/1:132,57:32:189:0.302:2	0/1:0,176:31:176:1.00:2
chrX	7812039	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,14:32:188:0.074:2	./.	./.	./.	./.	./.
chrX	7812052	rs79139778	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:161,21:29:182:0.115:2	0/1:168,23:29:191:0.120:2	./.	0/1:45,135:29:180:0.750:2	./.	./.	./.	./.	./.	0/1:140,46:30:186:0.247:2	0/1:48,128:30:176:0.727:2
chrX	8138080	rs1058239	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:114,62:32:176:0.352:2	0/1:90,76:32:166:0.458:2	0/1:1,37:31:38:0.974:2	./.	./.	0/1:0,180:32:180:1.00:2	./.	./.	0/1:0,151:33:151:1.00:2	0/1:1,163:32:164:0.994:2	0/1:0,139:32:139:1.00:2
chrX	8138088	rs77780768	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,17:32:39:0.436:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	8138160	rs1058238	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:82,14:30:96:0.146:2	0/1:54,12:33:66:0.182:2	./.	0/1:114,8:33:122:0.066:2	0/1:131,5:33:136:0.037:2	0/1:0,11:31:11:1.00:2	0/1:172,6:33:178:0.034:2	./.	0/1:0,19:35:19:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,28:30:28:1.00:2
chrX	8138165	rs1058237	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:79,12:30:91:0.132:2	0/1:47,7:33:54:0.130:2	./.	0/1:116,8:32:124:0.065:2	0/1:125,5:32:130:0.038:2	0/1:0,4:34:4:1.00:2	0/1:167,7:32:174:0.040:2	./.	0/1:0,5:35:5:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,19:31:19:1.00:2
chrX	8138182	rs41305169	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:33:3:1.00:2	./.	./.	0/1:1,5:27:6:0.833:2	./.	./.	./.	./.	./.
chrX	8138343	rs41311791	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,8:31:180:0.044:2
chrX	8138375	rs376363003	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,7:29:49:0.143:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	8138596	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,10:31:71:0.143:2	0/1:48,5:32:54:0.094:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	8138641	rs199682960	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,6:33:109:0.055:2	./.
chrX	8138670	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:70,5:32:75:0.067:2	0/1:52,5:30:57:0.088:2	./.	./.	./.	./.	./.	0/1:136,14:32:150:0.093:2	./.	./.	./.
chrX	8138678	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,6:28:23:0.261:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	8433833	rs201223234	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,43:32:117:0.368:2	0/1:104,59:32:164:0.362:2	0/1:62,63:31:125:0.504:2
chrX	8434037	rs200603995	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:135,13:28:149:0.088:2	0/1:59,5:31:64:0.078:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	8434046	rs201553450	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:95,4:33:99:0.040:2	./.	./.	./.	./.	./.	./.
chrX	8434071	rs5978242	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,6:33:18:0.333:2	./.	0/1:77,17:33:94:0.181:2	./.	0/1:152,15:33:168:0.090:2	./.	./.	./.	./.
chrX	8434101	rs201156439	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:126,8:26:135:0.060:2	./.	./.	0/1:36,6:30:42:0.143:2	./.	./.	./.	./.	0/1:36,7:32:43:0.163:2	./.	0/1:30,4:31:34:0.118:2
chrX	8434161	rs6640132	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,6:29:16:0.400:2	./.	./.	./.	./.	./.	./.	./.
chrX	8434166	rs200893803	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,47:31:144:0.329:2	./.	./.	./.	./.	./.
chrX	8434191	rs202120574	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,5:33:145:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	8434196	rs200634051	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:152,4:33:156:0.026:2	./.	./.	./.	0/1:50,6:32:57:0.107:2	./.	0/1:127,4:30:131:0.031:2	./.	./.	./.	./.
chrX	8434218	rs371122549	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:177,9:26:186:0.048:2	0/1:146,14:26:160:0.088:2	./.	./.	0/1:84,8:27:92:0.087:2	./.	./.	0/1:189,6:26:195:0.031:2	./.	./.	./.
chrX	8434221	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:162,7:28:169:0.041:2	./.	./.	0/1:96,7:32:103:0.068:2	./.	./.	./.	./.	./.	./.
chrX	8434247	rs201851798	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,7:26:27:0.259:2	./.	./.
chrX	8434248	rs200461935	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:31:13:0.462:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	8434251	rs376250913	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,4:33:29:0.138:2	./.	./.
chrX	8434256	rs200112127	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:171,6:27:177:0.034:2	0/1:180,6:30:186:0.032:2	0/1:7,9:31:16:0.563:2	0/1:54,55:31:109:0.505:2	./.	0/1:184,9:26:193:0.047:2	0/1:190,7:28:197:0.036:2	0/1:185,6:25:191:0.031:2	0/1:20,12:33:32:0.375:2	./.	./.
chrX	8434278	rs201489511	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:167,6:24:173:0.035:2	./.	./.	./.	./.	0/1:177,9:23:186:0.048:2	./.	./.	./.	./.	./.
chrX	8434281	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:184,6:24:191:0.032:2	./.	./.	./.	./.	./.	./.
chrX	8434311	rs374799202	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:160,29:29:189:0.153:2	0/1:155,24:28:179:0.134:2	./.	0/1:175,16:30:192:0.084:2	0/1:169,18:31:187:0.096:2	0/1:173,9:27:182:0.049:2	0/1:188,6:28:194:0.031:2	0/1:182,8:26:190:0.042:2	0/1:55,7:28:62:0.113:2	0/1:172,13:26:186:0.070:2	0/1:22,24:31:46:0.522:2
chrX	8434316	rs369681806	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,9:33:192:0.047:2	0/1:180,11:32:191:0.058:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	8434321	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:182,7:32:189:0.037:2	./.	./.	./.	./.	./.	./.	./.
chrX	8434324	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:184,5:34:190:0.026:2	./.	./.	./.	./.	./.	./.	./.
chrX	8434367	rs139169782	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,158:31:164:0.969:2	./.	./.	./.	./.	./.	./.	./.
chrX	8434368	rs199956874	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,8:30:43:0.190:2	./.	./.
chrX	8434371	rs113934664	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,7:25:38:0.184:2	./.	./.
chrX	8434376	rs112788017	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:147,31:32:178:0.174:2	0/1:151,39:33:190:0.205:2	./.	0/1:168,8:35:176:0.045:2	0/1:181,16:34:197:0.081:2	./.	0/1:183,10:34:193:0.052:2	./.	0/1:29,12:32:41:0.293:2	./.	0/1:5,4:34:9:0.444:2
chrX	8434419	rs201152323	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:152,33:32:185:0.178:2	0/1:153,39:30:192:0.203:2	./.	0/1:132,49:30:181:0.271:2	./.	./.	./.	./.	./.	0/1:183,7:31:190:0.037:2	0/1:6,75:29:81:0.926:2
chrX	8503641	rs809446	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,188:32:188:1.00:2	0/1:0,176:32:176:1.00:2	0/1:0,41:31:41:1.00:2	0/1:1,189:31:190:0.995:2	0/1:2,193:31:195:0.990:2	0/1:2,171:31:173:0.988:2	0/1:0,189:32:189:1.00:2	0/1:113,81:32:194:0.418:2	./.	0/1:0,180:31:180:1.00:2	./.
chrX	8504833	rs808119	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,149:32:150:0.993:2	0/1:0,92:31:92:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,84:30:85:1.00:2	0/1:1,58:30:59:0.983:2	0/1:0,83:30:83:1.00:2	0/1:1,137:31:138:0.993:2	0/1:98,80:30:178:0.449:2	./.	0/1:1,136:31:137:0.993:2	./.
chrX	8507705	rs147662148	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:34:190:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	8768148	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:32:77:0.052:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	9622289	rs200551470	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:33:177:0.023:2	./.	./.	./.	./.	./.
chrX	9622290	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:33:180:0.022:2	./.	./.	./.	./.	./.
chrX	9665429	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:77,4:32:81:0.049:2	./.	./.	./.	./.	./.	0/1:140,4:33:144:0.028:2
chrX	9665481	rs72612809	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:70,40:31:110:0.364:2	0/1:50,34:32:84:0.405:2	./.	0/1:3,46:31:49:0.939:2	./.	0/1:2,61:32:63:0.968:2	0/1:56,34:32:90:0.378:2	./.	0/1:2,69:33:71:0.972:2	./.	0/1:4,87:31:91:0.956:2
chrX	9707550	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,17:33:20:0.850:2	./.	./.
chrX	9727419	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:32:192:0.021:2	./.
chrX	9841823	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,9:32:15:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	9859098	rs6640543	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,146:29:147:1.00:2	0/1:0,75:29:75:1.00:2	0/1:0,32:29:32:1.00:2	0/1:2,128:29:130:0.985:2	./.	0/1:0,90:29:90:1.00:2	0/1:5,169:29:174:0.971:2	0/1:0,172:28:172:1.00:2	0/1:0,102:30:103:1.00:2	0/1:2,143:28:146:0.986:2	0/1:0,54:28:54:1.00:2
chrX	9862731	rs74461072	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,14:31:15:0.933:2	./.	./.	./.	./.	./.	./.
chrX	9914947	rs2073942	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:42,29:29:71:0.408:2	0/1:17,21:29:38:0.553:2	./.	0/1:0,33:29:33:1.00:2	./.	0/1:0,34:28:34:1.00:2	0/1:40,35:27:75:0.467:2	./.	0/1:1,51:29:52:0.981:2	./.	./.
chrX	10062295	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:33:6:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	10085227	rs7058143	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,5:30:5:1.00:2	./.	./.	./.	./.	./.	./.
chrX	10085602	rs56130457	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,10:29:14:0.714:2	./.	./.	./.	./.	./.	./.
chrX	10085674	rs6530368	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,2:28:2:1.00:2	0/1:0,3:30:3:1.00:2	./.	0/1:0,3:27:3:1.00:2	0/1:0,4:24:4:1.00:2	./.	0/1:0,6:29:6:1.00:2	0/1:3,11:29:14:0.786:2	0/1:0,6:30:6:1.00:2	0/1:0,3:29:3:1.00:2	0/1:0,6:29:6:1.00:2
chrX	10094215	rs41311473	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,139:30:142:0.979:2	./.	./.	./.	./.	./.	./.	./.
chrX	10107457	rs186314942	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,149:31:151:0.987:2	./.	./.	./.	./.	./.	./.	./.
chrX	11136623	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:32:55:0.073:2	./.	./.	./.	./.
chrX	11139077	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,53:32:58:0.914:2	./.	./.
chrX	11157535	rs1009758	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:33:5:0.800:2	./.	./.	./.	./.	./.	./.	0/1:0,3:34:3:1.00:2	./.	0/1:0,3:32:3:1.00:2
chrX	11200260	rs7060317	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:54,43:34:98:0.443:2	0/1:43,39:33:82:0.476:2	0/1:10,4:34:14:0.286:2	./.	./.	./.	0/1:52,43:34:95:0.453:2	./.	0/1:0,68:34:68:1.00:2	./.	0/1:0,86:33:86:1.00:2
chrX	11316742	rs2106416	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:27,36:30:63:0.571:2	0/1:12,18:32:30:0.600:2	./.	./.	./.	0/1:0,32:30:32:1.00:2	0/1:52,50:30:102:0.490:2	./.	./.	./.	./.
chrX	11682456	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:32:116:0.034:2	./.
chrX	11776463	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,6:34:82:0.073:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	12725701	rs6641078	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:86,43:33:129:0.333:2	0/1:66,50:32:116:0.431:2	./.	./.	./.	./.	./.	0/1:191,5:31:196:0.026:2	./.	./.	./.
chrX	12809661	rs1731469	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,26:31:26:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,10:28:10:1.00:2	0/1:0,21:29:21:1.00:2	0/1:0,32:28:32:1.00:2	0/1:0,33:28:33:1.00:2	0/1:0,30:29:30:1.00:2	0/1:21,30:30:51:0.588:2	0/1:0,21:31:21:1.00:2	0/1:0,38:29:38:1.00:2	0/1:0,7:31:7:1.00:2
chrX	12903659	rs179008	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,4:29:67:0.060:2	./.	0/1:1,57:31:58:0.983:2	./.	0/1:73,53:32:126:0.421:2	./.	./.	./.
chrX	12906030	rs864058	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:89,63:33:152:0.414:2	0/1:63,56:32:119:0.471:2	./.	./.	./.	./.	0/1:90,57:33:147:0.388:2	0/1:60,101:33:161:0.627:2	./.	./.	./.
chrX	12906226	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:30:122:0.033:2	./.	./.	./.	./.	./.
chrX	12906628	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,4:32:145:0.028:2	./.
chrX	12924826	rs3764880	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:80,95:30:175:0.543:2	0/1:63,52:29:115:0.452:2	./.	./.	./.	./.	0/1:0,132:29:132:1.00:2	./.	./.	./.	0/1:3,140:29:143:0.979:2
chrX	12937513	rs2159377	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:25,39:31:64:0.609:2	0/1:19,17:31:36:0.472:2	./.	./.	./.	./.	0/1:21,19:32:40:0.475:2	./.	./.	0/1:16,25:30:41:0.610:2	0/1:0,45:31:45:1.00:2
chrX	12937804	rs5744080	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:66,46:31:112:0.411:2	0/1:35,24:31:59:0.407:2	0/1:6,11:31:17:0.647:2	./.	./.	./.	0/1:58,43:32:101:0.426:2	0/1:73,61:32:134:0.455:2	./.	0/1:51,41:33:92:0.446:2	0/1:0,66:32:66:1.00:2
chrX	12937832	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,34:32:87:0.391:2	0/1:27,17:32:44:0.386:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	12939112	rs2407992	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:79,64:33:143:0.448:2	0/1:51,51:32:102:0.500:2	0/1:14,7:34:21:0.333:2	./.	./.	./.	0/1:63,46:32:110:0.422:2	0/1:86,67:33:153:0.438:2	./.	0/1:68,58:33:126:0.460:2	0/1:0,83:33:83:1.00:2
chrX	12939316	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:26,3:30:29:0.103:2	./.	./.	./.	./.	./.	./.
chrX	12939406	rs5744083	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:33:11:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	12939412	rs3747414	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:50,46:31:96:0.479:2	0/1:19,27:31:46:0.587:2	0/1:6,7:32:13:0.538:2	./.	./.	./.	0/1:31,29:30:60:0.483:2	0/1:58,52:31:110:0.473:2	./.	0/1:43,22:32:65:0.338:2	0/1:0,48:32:48:1.00:2
chrX	12939928	rs2109135	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,97:31:97:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,12:32:12:1.00:2	./.	0/1:0,62:32:62:1.00:2	0/1:0,50:32:50:1.00:2	0/1:1,108:32:109:0.991:2	0/1:1,149:32:150:0.993:2	0/1:0,47:32:47:1.00:2	0/1:1,82:32:83:0.988:2	0/1:0,58:32:58:1.00:2
chrX	13337059	rs4830842	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,6:31:16:0.375:2	0/1:0,76:30:76:1.00:2	./.	./.	./.	0/1:105,90:31:195:0.462:2	./.	0/1:62,60:31:123:0.492:2	./.
chrX	13337115	rs17322143	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,82:31:159:0.519:2	./.
chrX	13588028	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,4:32:167:0.024:2	./.
chrX	13612990	rs141324039	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:87,71:32:158:0.449:2	0/1:58,47:32:105:0.448:2	0/1:10,19:31:29:0.655:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	13635937	rs5978653	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:49,40:31:89:0.449:2	0/1:22,13:28:35:0.371:2	0/1:0,3:29:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	13636063	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:63,11:14:74:0.149:2	./.	./.	./.	./.	./.	./.	0/1:49,11:13:61:0.183:2	./.	./.	./.
chrX	13681115	rs2361159	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,54:32:56:0.964:2	0/1:0,37:32:37:1.00:2	0/1:0,7:28:7:1.00:2	./.	0/1:0,25:32:25:1.00:2	0/1:0,36:32:36:1.00:2	0/1:40,25:31:65:0.385:2	0/1:36,28:32:64:0.438:2	./.	0/1:29,26:33:55:0.473:2	./.
chrX	13681638	rs5935649	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,124:32:125:0.992:2	0/1:1,65:32:66:0.985:2	0/1:0,13:32:13:1.00:2	./.	0/1:2,66:31:68:0.971:2	0/1:0,41:30:41:1.00:2	0/1:66,42:32:108:0.389:2	0/1:84,57:31:141:0.404:2	./.	0/1:70,61:32:131:0.466:2	./.
chrX	13681679	rs5935650	G	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,96:32:96:1.00:2	0/1:1,54:32:55:0.982:2	0/1:0,12:32:12:1.00:2	./.	0/1:1,34:31:35:0.971:2	0/1:0,41:31:41:1.00:2	0/1:46,21:31:67:0.313:2	0/1:63,43:31:106:0.406:2	./.	0/1:47,35:32:82:0.427:2	./.
chrX	13682066	rs5935651	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,106:31:107:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,14:29:15:1.00:2	./.	0/1:1,54:30:55:0.982:2	0/1:0,51:30:51:1.00:2	0/1:62,39:30:102:0.386:2	0/1:54,47:30:101:0.465:2	./.	0/1:51,41:31:92:0.446:2	./.
chrX	13682577	rs3761625	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,59:32:59:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,12:31:12:1.00:2	./.	0/1:0,37:31:37:1.00:2	0/1:0,30:31:30:1.00:2	0/1:25,17:32:42:0.405:2	0/1:26,46:32:72:0.639:2	./.	0/1:37,30:30:67:0.448:2	./.
chrX	13682715	rs3761626	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,37:31:37:1.00:2	0/1:2,21:31:23:0.913:2	0/1:0,7:31:7:1.00:2	./.	0/1:0,15:31:15:1.00:2	0/1:2,27:30:29:0.931:2	0/1:15,10:31:25:0.400:2	0/1:19,22:31:41:0.537:2	./.	0/1:13,21:31:34:0.618:2	./.
chrX	13682758	rs145370584	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,19:32:38:0.500:2	./.	./.	./.	./.
chrX	13683170	rs4830885	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,73:32:73:1.00:2	0/1:0,50:32:50:1.00:2	0/1:0,4:31:4:1.00:2	./.	0/1:0,30:31:30:1.00:2	0/1:0,36:31:36:1.00:2	0/1:34,22:32:56:0.393:2	0/1:44,29:31:73:0.397:2	./.	0/1:28,39:32:67:0.582:2	./.
chrX	13727549	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:32:187:0.022:2	./.	./.	./.	./.	./.
chrX	13728122	rs5935655	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,34:31:83:0.410:2	./.	./.	./.	./.
chrX	13734672	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:33:185:0.022:2
chrX	13734726	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,5:33:183:0.027:2	./.	./.	./.	./.	./.
chrX	13754745	rs312262818	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:33:101:0.040:2	./.	./.
chrX	13754772	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:33:75:0.053:2	./.	./.
chrX	13757021	.	C	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:181,8:32:189:0.042:2	./.	./.	./.	./.	./.	0/1:111,4:32:115:0.035:2	0/1:189,8:31:197:0.041:2	0/1:61,6:33:67:0.090:2	./.	0/1:117,8:33:125:0.064:2
chrX	13762586	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:127,4:31:131:0.031:2	./.	./.	./.	./.	./.	./.	./.
chrX	13762624	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,4:33:103:0.039:2	./.	./.	./.	./.	./.	./.	./.
chrX	13764458	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:32:195:0.021:2	./.	./.	./.	./.
chrX	13764499	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:32:93:0.043:2	./.	./.	./.	./.	./.
chrX	13764502	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:31:89:0.045:2	./.	./.	./.	./.	./.
chrX	13786210	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:34:92:0.043:2	./.
chrX	13786256	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:52,3:33:55:0.055:2	./.	./.	./.	0/1:58,4:30:62:0.065:2	./.	./.	./.	./.	./.
chrX	14027030	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:34:120:0.033:2	./.
chrX	14027168	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:31:126:0.032:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	14038555	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:33:191:0.021:2	./.	./.	./.	./.	./.
chrX	14622449	rs111946619	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:13,9:32:22:0.409:2	0/1:8,9:32:17:0.529:2	./.	./.	./.	./.	0/1:12,12:32:24:0.500:2	./.	./.	./.	./.
chrX	14627144	rs2229963	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,7:31:17:0.412:2	0/1:6,64:32:70:0.914:2	./.	./.	0/1:76,54:32:130:0.415:2	0/1:112,76:32:188:0.404:2	./.	0/1:53,64:31:117:0.547:2	./.
chrX	14883257	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,4:28:33:0.121:2	./.	./.	./.	./.	./.
chrX	14883303	rs201633684	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,12:33:28:0.429:2	./.
chrX	14927058	rs147747691	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,14:31:23:0.609:2	./.	./.	./.	./.	./.	./.	0/1:85,52:32:137:0.380:2	./.
chrX	15272863	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2	./.	./.
chrX	15306063	rs35859007	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,92:33:190:0.484:2	./.	./.	./.	./.
chrX	15332558	rs5935944	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,5:33:14:0.357:2	./.	./.	0/1:1,39:33:40:0.975:2	./.	0/1:31,28:33:59:0.475:2	0/1:0,45:34:45:1.00:2	0/1:48,35:33:83:0.422:2	0/1:0,47:33:47:1.00:2
chrX	15381421	rs12011065	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,35:31:36:0.972:2	./.	0/1:32,40:31:72:0.556:2	./.	./.	./.	./.
chrX	15415583	rs8094	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,194:33:196:0.995:2	0/1:0,136:33:136:1.00:2	0/1:21,18:32:39:0.462:2	0/1:2,123:32:125:0.984:2	0/1:2,108:32:110:0.982:2	0/1:2,97:32:99:0.980:2	0/1:1,189:32:190:0.995:2	0/1:2,191:32:193:0.990:2	./.	./.	0/1:0,138:32:138:1.00:2
chrX	15582298	rs41303171	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,5:29:17:0.294:2	./.	./.	./.	./.	0/1:99,60:29:159:0.377:2	./.	./.	./.
chrX	15610348	rs2285666	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:41,22:34:63:0.349:2	0/1:30,13:33:43:0.302:2	./.	./.	0/1:0,12:32:12:1.00:2	./.	0/1:25,17:32:42:0.405:2	./.	./.	./.	./.
chrX	15711114	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:169,27:33:196:0.138:2	0/1:159,15:33:174:0.086:2	0/1:78,10:34:88:0.114:2	0/1:153,30:33:183:0.164:2	0/1:144,31:33:175:0.177:2	0/1:168,22:32:190:0.116:2	0/1:171,21:33:192:0.109:2	0/1:181,18:33:199:0.090:2	0/1:157,21:34:178:0.118:2	0/1:181,16:31:197:0.081:2	0/1:144,27:33:171:0.158:2
chrX	15782747	rs2257278	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:139,48:31:187:0.257:2	0/1:147,46:31:193:0.238:2	./.	0/1:150,39:31:189:0.206:2	./.	./.	0/1:145,49:32:194:0.253:2	0/1:167,21:28:188:0.112:2	./.	0/1:168,23:31:191:0.120:2	0/1:151,34:32:185:0.184:2
chrX	15800751	rs1808	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:33,35:32:68:0.515:2	0/1:26,29:32:55:0.527:2	0/1:11,5:32:16:0.313:2	0/1:2,48:31:50:0.960:2	./.	./.	0/1:55,54:31:109:0.495:2	0/1:1,114:31:115:0.991:2	./.	./.	./.
chrX	15818006	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:113,4:33:117:0.034:2	./.	./.	./.	./.	./.	./.	./.
chrX	15833863	rs76231584	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:182,7:31:189:0.037:2	0/1:179,5:30:184:0.027:2	./.	./.	0/1:194,4:32:198:0.020:2	./.	./.	./.
chrX	15833956	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:33:144:0.028:2
chrX	15836752	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,4:31:118:0.034:2	./.	./.	./.	./.	./.	./.	./.
chrX	15838366	rs2301724	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,74:33:178:0.416:2	0/1:89,84:32:173:0.486:2	./.	./.	./.	0/1:0,184:32:184:1.00:2	0/1:0,170:32:170:1.00:2	0/1:109,80:32:189:0.423:2	./.	./.	0/1:1,171:32:172:0.994:2
chrX	15840888	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:30:73:0.055:2
chrX	15870468	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	16168467	rs4986945	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:59,54:32:113:0.478:2	0/1:38,26:31:64:0.406:2	0/1:7,12:33:19:0.632:2	./.	./.	./.	0/1:60,61:32:121:0.504:2	0/1:64,66:32:130:0.508:2	./.	./.	./.
chrX	16168677	rs4986946	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:55,51:32:106:0.481:2	0/1:36,46:32:82:0.561:2	0/1:4,11:34:15:0.733:2	./.	./.	./.	0/1:50,51:32:101:0.505:2	0/1:51,72:32:123:0.585:2	./.	./.	./.
chrX	16188611	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:31:148:0.027:2	./.
chrX	16847765	rs5969783	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,89:31:165:0.539:2	./.	./.	./.
chrX	16859628	rs5924530	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,8:32:12:0.667:2	./.	0/1:0,52:31:52:1.00:2	./.	0/1:47,53:32:100:0.530:2	0/1:2,137:31:139:0.986:2	./.	0/1:53,45:31:98:0.459:2	./.
chrX	16870878	rs200419169	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,21:32:22:0.955:2	./.	./.	./.	./.	./.
chrX	16887655	rs67984110	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,13:31:20:0.650:2	./.	./.	0/1:0,107:31:107:1.00:2	./.	./.	0/1:1,84:32:85:0.988:2	0/1:90,90:31:180:0.500:2	0/1:0,91:32:92:1.00:2
chrX	17746244	rs3747295	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,66:32:114:0.579:2	0/1:34,35:32:69:0.507:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	17746249	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:32:142:0.028:2	./.
chrX	17819377	rs6527818	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,100:32:100:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,17:33:17:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,71:32:71:1.00:2	0/1:1,70:31:71:0.986:2	0/1:0,122:31:122:1.00:2	0/1:0,125:32:125:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,123:32:123:1.00:2	0/1:0,58:31:58:1.00:2
chrX	18230715	rs17274127	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:35,31:33:66:0.470:2	0/1:30,16:32:46:0.348:2	0/1:0,2:32:2:1.00:2	./.	./.	./.	0/1:0,30:33:30:1.00:2	0/1:19,28:33:47:0.596:2	./.	0/1:14,28:32:42:0.667:2	./.
chrX	18276257	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,75:33:157:0.478:2	0/1:74,60:32:134:0.448:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	18342034	rs3213544	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:79,45:31:124:0.363:2	0/1:45,36:30:81:0.444:2	./.	./.	./.	./.	0/1:0,114:30:115:1.00:2	0/1:123,64:29:187:0.342:2	0/1:0,80:31:80:1.00:2	./.	./.
chrX	18582659	rs199814742	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,11:31:11:1.00:2	./.	./.	./.	./.	./.
chrX	18638082	rs35478150	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,14:33:14:1.00:2	./.	./.	./.	0/1:1,18:33:19:0.947:2	0/1:17,18:32:35:0.514:2	./.
chrX	18662742	rs1801161	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,37:28:37:1.00:2	./.	./.	./.	./.	./.
chrX	18671574	rs36022183	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,17:32:17:1.00:2	./.	./.	./.	./.	./.
chrX	18671655	rs139155110	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,26:32:26:1.00:2	./.	./.	./.	./.	./.
chrX	18779721	rs2269584	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:32,35:33:67:0.522:2	0/1:27,21:32:48:0.438:2	./.	0/1:0,24:32:24:1.00:2	./.	0/1:0,9:33:9:1.00:2	0/1:16,27:32:43:0.628:2	0/1:27,26:32:53:0.491:2	./.	./.	./.
chrX	18807332	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:196,4:35:200:0.020:2	./.	./.
chrX	18824594	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:29:81:0.049:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	18824657	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,4:34:32:0.125:2	./.	./.
chrX	18936825	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:31,4:32:35:0.114:2	./.	./.	./.	./.	./.	./.
chrX	18961875	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,8:32:142:0.057:2
chrX	18972497	rs17313469	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,22:32:47:0.468:2	0/1:13,11:32:24:0.458:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	19017987	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,29:33:75:0.387:2	./.
chrX	19031938	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:30:118:0.034:2	./.
chrX	19041592	rs5909263	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:32:23:1.00:2	0/1:0,7:32:7:1.00:2	0/1:0,5:33:5:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,23:32:23:1.00:2	0/1:13,14:33:27:0.519:2	0/1:0,10:33:10:1.00:2	0/1:0,21:31:21:1.00:2	./.
chrX	19362161	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:30:82:0.049:2	./.	./.	./.	./.	./.
chrX	19363863	rs10616757	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:68,7:19:77:0.093:2	./.	./.	./.	./.	./.	./.	0/1:53,10:13:63:0.159:2	./.	0/1:63,7:19:71:0.100:2	./.
chrX	19363876	rs201567280	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:18,4:25:22:0.182:2	./.	0/1:29,5:29:34:0.147:2	./.	./.	./.	0/1:40,6:25:46:0.130:2	0/1:27,5:22:32:0.156:2
chrX	19363879	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:30:43:0.093:2	./.	./.	./.	./.	0/1:42,5:24:47:0.106:2
chrX	19369452	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,4:31:100:0.040:2	./.	./.	./.	./.	./.	./.	./.
chrX	19377656	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:29:103:0.039:2	./.	./.	./.	./.
chrX	19560093	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,46:33:90:0.511:2	./.	./.
chrX	19688973	rs199881320	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:64,15:18:79:0.190:2	./.	./.	./.	./.	./.	0/1:37,10:23:47:0.213:2	0/1:56,16:13:72:0.222:2	./.	0/1:38,7:27:45:0.156:2	./.
chrX	20071046	rs34519770	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,121:32:123:0.984:2	./.	./.	./.	0/1:74,113:33:187:0.604:2	./.	0/1:106,84:32:190:0.442:2	0/1:0,137:32:137:1.00:2
chrX	20074869	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:33:40:0.100:2	./.	./.	./.	./.	./.
chrX	20146443	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,4:33:164:0.024:2	./.	./.
chrX	20156724	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:119,4:31:123:0.033:2	./.	0/1:78,4:31:82:0.049:2	./.	./.	0/1:127,10:29:137:0.073:2	./.	./.
chrX	20159732	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:29,4:30:33:0.121:2	./.	./.	./.	./.	./.	./.
chrX	20195135	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:32:104:0.038:2	./.	./.	./.
chrX	20204461	rs2230488	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,72:30:73:0.986:2	./.	./.	./.	./.	./.	0/1:65,64:30:129:0.496:2	0/1:3,132:31:135:0.978:2
chrX	21674366	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:31:123:0.033:2	./.	./.
chrX	21861434	rs3213451	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,59:33:130:0.454:2	0/1:46,41:32:87:0.471:2	0/1:0,13:32:13:1.00:2	0/1:1,67:32:68:0.985:2	./.	0/1:0,70:32:70:1.00:2	./.	./.	./.	0/1:49,58:32:107:0.542:2	0/1:1,84:32:85:0.988:2
chrX	21876112	rs5951642	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:17,11:30:28:0.393:2	0/1:14,9:29:23:0.391:2	0/1:1,5:30:6:0.833:2	0/1:3,5:31:8:0.625:2	./.	0/1:0,14:30:14:1.00:2	./.	./.	./.	0/1:16,16:30:32:0.500:2	0/1:2,17:30:20:0.895:2
chrX	21876115	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,3:33:10:0.300:2	./.	./.	./.	./.	./.	./.	./.
chrX	21876221	rs202208699	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:119,60:33:179:0.335:2	0/1:73,23:33:96:0.240:2	0/1:9,12:33:21:0.571:2	0/1:62,57:33:119:0.479:2	./.	0/1:60,39:32:99:0.394:2	./.	./.	./.	0/1:98,44:33:142:0.310:2	0/1:78,55:32:133:0.414:2
chrX	21896194	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:33:160:0.025:2	./.
chrX	21995267	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:31:172:0.023:2	./.	./.	./.
chrX	22002457	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:128:0.031:2
chrX	22002461	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,5:30:181:0.028:2	./.	./.	./.	0/1:128,4:32:132:0.030:2
chrX	22003289	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:31:138:0.029:2	./.	./.	./.	./.	./.
chrX	22003332	rs370491002	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:32:118:0.034:2	./.	./.	./.	./.	./.
chrX	22010734	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,5:33:60:0.083:2	./.	./.
chrX	22010752	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,4:33:101:0.040:2	./.
chrX	22010804	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:30:113:0.035:2	./.
chrX	22010805	rs184799167	G	C,A	.	PASS	AC=1,1;AF=0.167,0.167;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:BQ:DP:FA:SS	./.	./.	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/2:34:62:0.050:2	0/1:33:113:0.035:2	./.
chrX	22291606	rs5951426	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,12:31:15:0.800:2	./.	0/1:6,46:30:52:0.885:2	./.	0/1:119,66:31:185:0.357:2	./.	./.	0/1:109,49:31:158:0.310:2	./.
chrX	22291732	rs6629461	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	0/1:4,35:31:39:0.897:2	./.	0/1:45,25:30:70:0.357:2	./.	./.	0/1:28,17:31:45:0.378:2	./.
chrX	23019758	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:34:197:0.020:2	./.	./.	./.
chrX	23020218	rs78965413	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:29:89:0.045:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	23020263	rs78745205	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,8:30:166:0.048:2	./.	0/1:145,5:31:151:0.033:2	./.
chrX	23020281	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,7:32:32:0.219:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	23020372	rs79341555	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,7:31:84:0.083:2	./.	0/1:63,4:31:67:0.060:2	./.
chrX	23020407	rs77234118	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:29:90:0.044:2	./.	0/1:85,5:33:90:0.056:2	./.
chrX	23020497	rs77582817	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,3:33:39:0.077:2	./.	./.	0/1:82,4:32:86:0.047:2	./.	./.	./.	./.
chrX	23020530	rs75194101	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,6:32:89:0.067:2	0/1:96,4:30:100:0.040:2	./.	0/1:101,5:31:106:0.047:2	./.
chrX	23020558	rs74591526	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:34:141:0.028:2	./.	./.
chrX	23020593	rs5970972	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,5:30:66:0.076:2	./.	./.	0/1:105,9:31:114:0.079:2	0/1:139,6:30:145:0.041:2	0/1:144,5:33:150:0.034:2	0/1:147,6:32:153:0.039:2	./.
chrX	23020638	rs5970973	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:129,46:32:175:0.263:2	0/1:83,26:32:109:0.239:2	0/1:25,15:32:40:0.375:2	./.	./.	0/1:83,5:32:88:0.057:2	0/1:71,20:32:91:0.220:2	./.	0/1:76,37:32:113:0.327:2	./.	./.
chrX	23020653	rs5970673	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:120,34:33:154:0.221:2	0/1:72,20:32:92:0.217:2	0/1:20,9:32:29:0.310:2	./.	./.	./.	0/1:60,21:32:81:0.259:2	./.	0/1:65,31:33:96:0.323:2	./.	./.
chrX	23020661	rs77968596	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,5:32:76:0.066:2	./.	0/1:54,30:32:84:0.357:2	0/1:83,6:33:89:0.067:2	./.	./.
chrX	23020719	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,3:30:16:0.188:2	./.	./.	./.	./.	0/1:81,4:30:85:0.047:2	./.	./.	./.
chrX	23020747	rs5970674	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:114,6:27:120:0.050:2	./.	./.	./.	0/1:45,5:32:50:0.100:2	0/1:49,7:33:56:0.125:2	0/1:49,7:33:56:0.125:2	./.	0/1:64,9:33:73:0.123:2	./.	./.
chrX	23020782	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:165,6:26:171:0.035:2	./.	./.	0/1:70,5:32:75:0.067:2	0/1:48,6:31:54:0.111:2	./.	0/1:59,9:34:68:0.132:2	0/1:131,8:32:139:0.058:2	0/1:100,6:33:106:0.057:2	0/1:136,6:34:142:0.042:2	./.
chrX	23020850	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,5:31:48:0.104:2	0/1:60,4:30:64:0.063:2	0/1:64,11:29:75:0.147:2	./.	0/1:79,8:27:87:0.092:2	./.	./.
chrX	23397873	rs147324438	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,112:33:114:0.982:2	./.	./.
chrX	23398214	rs5926304	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,83:32:83:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,7:32:7:1.00:2	0/1:1,43:32:44:0.977:2	0/1:1,33:31:34:0.971:2	./.	0/1:44,42:33:86:0.488:2	0/1:0,97:32:97:1.00:2	./.	0/1:37,32:32:69:0.464:2	0/1:1,42:33:43:0.977:2
chrX	23411049	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,4:26:51:0.078:2	./.	./.	./.	./.	./.	./.	./.
chrX	23693246	rs41305213	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:8,56:31:64:0.875:2	./.	./.	./.	0/1:3,89:33:92:0.967:2	./.	./.
chrX	23722835	rs11175	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:34:13:0.385:2	./.	./.	./.	0/1:50,61:33:111:0.550:2	./.	./.	./.	0/1:2,89:33:91:0.978:2
chrX	23740816	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,4:33:192:0.021:2	./.
chrX	23858452	rs8680	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,44:32:93:0.473:2	./.	0/1:113,5:32:118:0.042:2	./.	./.
chrX	23886716	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.
chrX	23928489	rs2707164	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,160:32:160:1.00:2	0/1:0,99:32:99:1.00:2	0/1:15,18:32:33:0.545:2	0/1:1,116:32:117:0.991:2	0/1:4,70:32:74:0.946:2	0/1:2,109:31:111:0.982:2	0/1:91,94:32:185:0.508:2	0/1:5,183:32:188:0.973:2	0/1:1,95:33:96:0.990:2	0/1:0,173:32:173:1.00:2	0/1:2,107:32:109:0.982:2
chrX	24024331	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:32:75:0.053:2
chrX	24073761	rs36018672	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,137:31:138:1.00:2	0/1:0,171:30:171:1.00:2	0/1:28,15:28:44:0.349:2	0/1:3,139:29:142:0.979:2	0/1:3,120:27:123:0.976:2	0/1:1,143:28:144:0.993:2	0/1:64,51:28:115:0.443:2	0/1:0,116:28:116:1.00:2	0/1:0,148:31:148:1.00:2	0/1:0,112:30:112:1.00:2	0/1:1,134:31:135:0.993:2
chrX	24073777	rs201953012	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:96,10:18:106:0.094:2	./.	./.	0/1:112,13:14:125:0.104:2	0/1:89,23:14:112:0.205:2	0/1:119,14:19:133:0.105:2	0/1:88,19:14:107:0.178:2	0/1:106,23:16:129:0.178:2	0/1:105,20:14:125:0.160:2	0/1:95,26:16:121:0.215:2	0/1:111,16:23:127:0.126:2
chrX	24075599	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,5:31:109:0.046:2	./.	./.	./.	./.	./.	./.	./.
chrX	24075602	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,5:27:104:0.048:2	./.	./.	./.	./.	./.	./.	./.
chrX	24075862	rs16997659	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,3:34:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	24078262	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:141,8:32:149:0.054:2
chrX	24080567	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:125,4:33:129:0.031:2	./.	./.	./.	./.	./.	./.
chrX	24080648	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,4:33:133:0.030:2	./.	./.	./.	./.	./.	./.	./.
chrX	24080681	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,4:30:112:0.036:2	./.	./.	./.	./.	./.	./.	./.
chrX	24082355	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:31:144:0.028:2	./.
chrX	24082425	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:30:125:0.032:2	./.	./.
chrX	24086094	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,4:32:88:0.045:2	./.	./.	./.	./.	./.
chrX	24086139	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,6:30:121:0.050:2	./.	./.	./.	./.	./.	./.	./.
chrX	24086170	.	A	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:183,7:30:190:0.037:2	./.	./.	0/1:129,15:31:144:0.104:2	./.	0/1:120,17:29:137:0.124:2	0/1:117,7:32:124:0.056:2	0/1:187,6:29:193:0.031:2	./.	0/1:186,6:32:193:0.031:2	0/1:152,11:30:163:0.067:2
chrX	24091300	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,7:32:183:0.038:2	./.	./.	./.	./.	./.
chrX	24197433	rs45445095	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,64:31:171:0.374:2	./.	./.	./.	./.
chrX	24197706	rs149552647	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,71:33:168:0.423:2	0/1:61,64:33:125:0.512:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	24225955	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:161,4:32:165:0.024:2	./.	./.	./.	./.	./.	./.	./.
chrX	24227086	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:116,4:30:120:0.033:2	./.	./.	./.	./.	./.	./.	./.
chrX	24228332	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,4:31:65:0.062:2	./.	./.	./.	./.	./.	./.	./.
chrX	24228545	rs372941972	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:47,4:31:51:0.078:2	./.	./.	./.	./.	./.	./.
chrX	24329196	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,5:30:175:0.029:2	./.	./.	./.
chrX	24329384	rs185361509	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:30:126:0.032:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	24329463	rs200760878	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:128:0.031:2	./.
chrX	24329598	rs181478890	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,5:31:105:0.048:2	./.
chrX	24329779	rs189357682	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,26:27:80:0.325:2	./.	./.	./.	./.
chrX	24329890	rs150066125	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,52:31:127:0.409:2	./.	./.	./.	./.
chrX	24329953	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:32:187:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	24330071	rs147318848	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,4:24:21:0.190:2	./.	./.	./.	0/1:155,25:25:180:0.139:2	./.	./.	./.	./.
chrX	24330110	rs140998641	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,24:30:200:0.120:2	./.	./.	./.	./.
chrX	24330137	rs144856212	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,31:30:195:0.159:2	./.	./.	./.	./.
chrX	24330386	rs73205129	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,38:29:87:0.437:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	24330575	rs200391334	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,40:31:193:0.207:2	./.	./.	./.	0/1:187,8:29:195:0.041:2
chrX	24330583	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,7:31:183:0.038:2
chrX	24330906	rs1799529	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,7:31:197:0.036:2	./.	./.	./.	0/1:191,4:32:195:0.021:2
chrX	24331328	rs150934306	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,47:32:118:0.398:2	./.	./.	./.	./.
chrX	24380982	rs182145161	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,16:32:146:0.110:2	./.	./.	./.	./.
chrX	24381387	rs1207577	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,108:32:108:1.00:2	./.	./.	./.	0/1:6,187:33:193:0.969:2	./.	./.	0/1:99,90:33:189:0.476:2	0/1:0,189:33:189:1.00:2
chrX	24381583	rs36000167	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:34:195:0.026:2	./.	./.	./.	./.
chrX	24381727	rs1207580	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:160,37:31:197:0.188:2	./.	./.	./.	./.
chrX	24382173	rs202005573	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,60:30:198:0.303:2	./.	./.	./.	./.
chrX	24382200	rs200289296	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,50:30:195:0.256:2	./.	./.	./.	./.
chrX	24382239	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:187,6:32:193:0.031:2	./.	./.	./.	0/1:188,4:35:192:0.021:2	./.	./.	./.	./.	./.
chrX	24382357	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,3:34:60:0.050:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	24382372	rs2695489	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,11:29:172:0.064:2	./.	0/1:129,15:28:144:0.104:2	./.	./.
chrX	24382373	rs10560780	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,10:31:171:0.058:2	./.	0/1:132,11:32:143:0.077:2	./.	./.
chrX	24382429	rs113091397	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,12:33:97:0.124:2	./.	0/1:35,33:31:68:0.485:2	./.	0/1:26,12:31:38:0.316:2
chrX	24382435	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,20:32:61:0.328:2	./.	./.
chrX	24382453	rs112697166	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,3:32:16:0.188:2	./.	./.	./.	0/1:61,8:33:69:0.116:2	./.	./.	./.	./.
chrX	24382792	rs5944420	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:29:13:0.308:2	./.	./.	./.	0/1:39,43:30:82:0.524:2	./.	./.	./.	0/1:2,42:28:46:0.955:2
chrX	24383034	rs193023225	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:30:115:0.035:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	24383061	rs11796308	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,21:32:41:0.512:2	./.	./.	./.	0/1:109,79:33:188:0.420:2	./.	./.	0/1:112,80:32:192:0.417:2	./.
chrX	24383062	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:32:116:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	24580234	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:33:180:0.022:2	./.	./.	./.	./.
chrX	24665167	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,5:31:180:0.028:2	./.	./.
chrX	24750507	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:33:158:0.025:2	./.
chrX	24839654	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,4:33:119:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	24844699	rs11573423	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,8:29:18:0.444:2	./.	./.	./.	0/1:91,90:28:181:0.497:2	./.	./.	./.	0/1:0,94:29:94:1.00:2
chrX	26157220	rs5944317	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:75,48:32:123:0.390:2	0/1:44,36:32:80:0.450:2	0/1:11,13:27:24:0.542:2	./.	0/1:1,62:31:63:0.984:2	./.	0/1:111,71:32:182:0.390:2	./.	0/1:0,73:33:73:1.00:2	0/1:68,46:32:114:0.404:2	./.
chrX	26157792	rs5944318	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:59,40:33:99:0.404:2	0/1:31,30:33:61:0.492:2	0/1:8,8:32:16:0.500:2	./.	0/1:0,31:32:31:1.00:2	./.	0/1:63,51:33:114:0.447:2	./.	0/1:0,45:33:45:1.00:2	0/1:71,53:33:124:0.427:2	./.
chrX	26212251	rs4351548	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	0/1:45,11:32:56:0.196:2	./.	./.	./.	./.
chrX	26212256	rs4630029	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,10:31:57:0.175:2	./.	./.	./.	./.
chrX	26212262	rs4272533	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,9:32:56:0.161:2	./.	./.	./.	./.
chrX	26212431	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:28:77:0.052:2	./.
chrX	26213219	rs5986312	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:72,35:31:107:0.327:2	0/1:37,37:32:74:0.500:2	0/1:11,8:33:19:0.421:2	./.	0/1:0,60:31:60:1.00:2	./.	0/1:78,49:32:127:0.386:2	./.	./.	0/1:71,48:31:121:0.403:2	./.
chrX	27766045	rs5926895	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:64,78:29:142:0.549:2	0/1:40,34:28:74:0.459:2	./.	./.	0/1:2,51:28:53:0.962:2	0/1:2,64:29:66:0.970:2	0/1:2,121:30:123:0.984:2	./.	0/1:1,79:30:80:0.988:2	./.	./.
chrX	27766250	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:32:121:0.033:2	./.	./.	./.	./.	./.
chrX	27766275	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,4:31:134:0.030:2	./.	./.	./.	./.	./.
chrX	27766294	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:31:150:0.027:2	./.	./.	./.	./.	./.
chrX	27766776	rs45553337	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,66:32:137:0.485:2	0/1:55,70:31:125:0.560:2	./.	./.	./.	0/1:2,142:31:144:0.986:2	0/1:76,97:31:173:0.561:2	./.	0/1:0,126:32:126:1.00:2	./.	./.
chrX	27766799	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:32:138:0.029:2	./.
chrX	27839572	rs1368769	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:37,32:33:69:0.464:2	0/1:13,17:32:30:0.567:2	0/1:7,5:33:12:0.417:2	./.	0/1:0,22:31:22:1.00:2	0/1:0,32:32:32:1.00:2	0/1:1,34:31:35:0.971:2	./.	0/1:0,25:34:25:1.00:2	./.	./.
chrX	27839617	rs12557898	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:19,22:32:41:0.537:2	0/1:17,10:32:27:0.370:2	0/1:8,6:32:14:0.429:2	./.	0/1:0,16:32:16:1.00:2	0/1:0,10:33:10:1.00:2	0/1:1,30:33:31:0.968:2	./.	0/1:0,20:32:20:1.00:2	./.	./.
chrX	27840828	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:183,4:33:187:0.021:2	./.	./.	./.	./.	./.	./.	./.
chrX	27841101	rs45612836	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.
chrX	30236878	rs2529541	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:16,25:31:41:0.610:2	0/1:5,6:31:11:0.545:2	0/1:0,4:32:4:1.00:2	0/1:0,24:31:24:1.00:2	0/1:1,13:29:14:0.929:2	0/1:0,19:29:19:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,28:30:28:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,41:31:41:1.00:2
chrX	30236913	rs5973792	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,10:31:10:1.00:2	0/1:7,13:32:20:0.650:2	./.
chrX	30237003	rs2074793	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,4:31:13:0.308:2	./.	./.	./.	./.	0/1:21,18:30:39:0.462:2	0/1:0,35:32:35:1.00:2	0/1:35,25:30:60:0.417:2	./.
chrX	30237652	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:85,4:31:89:0.045:2	./.	./.	./.	./.	./.	./.	./.
chrX	30238026	rs5972091	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,18:32:18:1.00:2	0/1:46,17:32:63:0.270:2	./.
chrX	30238090	rs1053918	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,20:32:55:0.364:2	0/1:0,27:33:27:1.00:2	0/1:39,28:32:67:0.418:2	./.
chrX	30254361	rs2071308	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:20,32:31:52:0.615:2	0/1:14,9:32:23:0.391:2	0/1:4,4:31:8:0.500:2	0/1:0,16:31:16:1.00:2	0/1:0,23:31:23:1.00:2	0/1:0,22:30:22:1.00:2	0/1:16,15:32:31:0.484:2	0/1:13,23:32:36:0.639:2	./.	0/1:14,26:32:40:0.650:2	0/1:0,23:32:23:1.00:2
chrX	30254376	rs2071309	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:23,37:32:60:0.617:2	0/1:15,11:31:26:0.423:2	0/1:0,7:31:7:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,32:31:32:1.00:2	0/1:17,17:32:34:0.500:2	0/1:1,42:32:43:0.977:2	0/1:1,29:33:30:0.967:2	0/1:17,29:33:46:0.630:2	0/1:1,28:32:30:0.966:2
chrX	30254530	rs2071310	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:95,93:31:188:0.495:2	0/1:52,37:32:89:0.416:2	0/1:27,8:32:35:0.229:2	0/1:3,84:32:87:0.966:2	0/1:0,46:31:46:1.00:2	0/1:1,82:31:83:0.988:2	0/1:68,50:30:118:0.424:2	0/1:94,90:31:185:0.489:2	./.	0/1:106,79:32:185:0.427:2	0/1:0,114:31:114:1.00:2
chrX	30255520	rs2529554	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:90,74:32:164:0.451:2	0/1:50,50:32:100:0.500:2	0/1:0,17:31:17:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,50:31:50:1.00:2	0/1:2,86:31:88:0.977:2	0/1:64,62:31:126:0.492:2	0/1:0,141:31:141:1.00:2	0/1:0,91:32:91:1.00:2	0/1:88,66:31:154:0.429:2	0/1:0,106:32:106:1.00:2
chrX	30261002	rs2071311	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:51,36:32:87:0.414:2	0/1:27,31:33:58:0.534:2	0/1:0,13:33:13:1.00:2	0/1:1,46:32:47:0.979:2	0/1:0,29:32:29:1.00:2	0/1:1,48:32:49:0.980:2	0/1:39,22:32:61:0.361:2	0/1:3,70:32:73:0.959:2	0/1:0,38:33:38:1.00:2	0/1:39,43:32:82:0.524:2	0/1:0,44:32:44:1.00:2
chrX	30261158	rs2856733	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,32:32:69:0.464:2	0/1:14,27:33:41:0.659:2	0/1:0,13:33:13:1.00:2	0/1:1,33:33:34:0.971:2	0/1:0,32:32:32:1.00:2	0/1:0,24:33:24:1.00:2	0/1:27,15:32:42:0.357:2	0/1:0,60:32:60:1.00:2	0/1:0,29:33:29:1.00:2	0/1:31,32:32:63:0.508:2	0/1:0,32:32:32:1.00:2
chrX	30269887	rs2529569	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:33:79:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,45:33:45:1.00:2	0/1:0,41:31:42:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,77:32:77:1.00:2	0/1:0,39:33:39:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,49:32:49:1.00:2
chrX	30322811	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:34:183:0.022:2	./.	./.	./.
chrX	30323916	rs3788891	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,136:32:136:1.00:2	./.
chrX	30323948	rs3788890	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,9:32:22:0.409:2	./.	./.	./.	0/1:0,104:32:104:1.00:2	0/1:81,64:32:145:0.441:2	./.	./.	./.
chrX	30326452	rs112775648	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,10:31:10:1.00:2
chrX	30326983	rs2269345	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,10:29:10:1.00:2	./.
chrX	30327367	rs6150	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:30:4:1.00:2	./.	./.	./.	0/1:7,4:30:11:0.364:2	0/1:1,20:30:21:0.952:2	./.	./.	./.
chrX	30577612	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:122,4:30:127:0.032:2	./.	./.	./.	./.	./.	./.
chrX	30577846	rs887369	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,155:33:156:0.994:2	0/1:0,80:33:80:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,82:33:82:1.00:2	./.	0/1:0,70:32:70:1.00:2	0/1:65,72:32:137:0.526:2	0/1:0,165:32:165:1.00:2	0/1:0,94:33:94:1.00:2	0/1:0,131:32:131:1.00:2	0/1:0,100:33:100:1.00:2
chrX	30578253	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,5:31:119:0.042:2	./.	./.	./.	./.	./.
chrX	30635596	rs61733569	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,70:32:174:0.402:2	./.	0/1:88,69:32:157:0.439:2	./.
chrX	30671724	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:33:143:0.028:2	./.	./.	./.	0/1:128,4:34:132:0.030:2	./.
chrX	30686141	rs34795481	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:9,9:31:18:0.500:2	0/1:5,83:32:88:0.943:2	./.	./.	0/1:91,70:32:161:0.435:2	./.	0/1:0,84:32:84:1.00:2	./.	./.
chrX	30686236	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,6:33:115:0.052:2	./.	./.	./.	./.
chrX	30709259	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,6:31:174:0.034:2	./.
chrX	30712567	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:73,3:34:76:0.039:2	./.	./.	./.	./.	./.	./.
chrX	30714817	rs41305205	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,23:31:23:1.00:2	./.	./.	0/1:12,19:31:31:0.613:2	./.	0/1:1,24:32:25:0.960:2	./.	./.
chrX	30715827	rs2035432	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,92:31:92:1.00:2	0/1:0,35:32:35:1.00:2	./.	0/1:0,45:32:45:1.00:2	0/1:0,36:30:36:1.00:2	0/1:0,43:30:43:1.00:2	0/1:1,64:31:65:0.985:2	0/1:62,40:31:102:0.392:2	0/1:2,39:32:41:0.951:2	0/1:62,36:30:98:0.367:2	0/1:0,50:30:50:1.00:2
chrX	30718959	rs61739587	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:38,3:32:41:0.073:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	30718979	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:172,4:32:176:0.023:2	./.	./.	./.	./.	./.	./.	./.
chrX	30726204	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:32:140:0.029:2	./.	0/1:162,4:32:166:0.024:2
chrX	30726233	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:161,5:30:166:0.030:2	./.	./.	0/1:189,6:29:195:0.031:2	./.	0/1:156,6:30:162:0.037:2	./.	0/1:178,6:30:184:0.033:2
chrX	30737571	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:32:117:0.034:2	./.	./.	./.	0/1:188,4:32:192:0.021:2	./.
chrX	30738791	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:180,4:33:184:0.022:2	./.	0/1:190,4:33:194:0.021:2
chrX	30745594	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:34:62:0.065:2	./.	./.	./.
chrX	30745640	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:32:86:0.047:2	./.	./.	./.
chrX	30872602	rs5927629	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,183:30:183:1.00:2	0/1:0,136:29:136:1.00:2	0/1:0,25:29:25:1.00:2	0/1:0,132:30:132:1.00:2	./.	0/1:0,128:29:128:1.00:2	0/1:0,192:29:192:1.00:2	0/1:0,185:29:185:1.00:2	0/1:0,143:30:143:1.00:2	0/1:0,185:30:185:1.00:2	0/1:0,132:29:132:1.00:2
chrX	31089930	rs438870	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,92:31:188:0.489:2	./.	./.	./.
chrX	31090116	rs189619097	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,4:31:83:0.048:2	./.	./.	./.	./.	./.	./.
chrX	31165400	rs1800281	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,30:31:54:0.556:2	0/1:12,26:31:38:0.684:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	31196896	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:32:111:0.036:2	./.	./.
chrX	31222094	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.
chrX	31496350	rs1800280	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,108:33:108:1.00:2	0/1:0,78:32:78:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,101:33:101:1.00:2	0/1:0,122:33:122:1.00:2	0/1:0,73:34:73:1.00:2	0/1:0,78:33:78:1.00:2	0/1:0,60:33:60:1.00:2
chrX	31496456	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,3:34:73:0.041:2	./.	./.
chrX	31676202	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,5:28:110:0.045:2	./.
chrX	31697636	rs1801188	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:59,47:30:106:0.443:2	0/1:31,41:30:72:0.569:2	./.	./.	0/1:0,102:29:102:1.00:2	./.	./.	./.	./.	./.	./.
chrX	31893307	rs1800275	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,79:33:79:1.00:2	0/1:59,48:33:107:0.449:2	./.	./.	./.
chrX	32380996	rs1801187	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,167:31:168:0.994:2	0/1:1,118:31:119:0.992:2	0/1:20,10:30:30:0.333:2	./.	0/1:1,86:31:87:0.989:2	./.	./.	./.	./.	0/1:99,74:31:174:0.428:2	./.
chrX	32429867	rs147474070	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,56:31:56:1.00:2
chrX	32481580	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:32:194:0.026:2	./.	./.	./.	./.
chrX	32503194	rs228406	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,88:32:88:1.00:2	0/1:0,53:32:53:1.00:2	0/1:3,12:33:15:0.800:2	./.	./.	0/1:0,42:32:42:1.00:2	./.	0/1:78,37:32:115:0.322:2	0/1:1,62:32:63:0.984:2	0/1:0,72:32:72:1.00:2	0/1:0,88:33:89:1.00:2
chrX	32509441	rs187926894	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,33:30:35:0.943:2	./.	./.	./.	./.	./.	./.
chrX	32591931	rs5927083	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,60:32:140:0.429:2	./.	./.	./.	./.
chrX	32613973	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,68:33:135:0.504:2	./.	./.	./.
chrX	32662391	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,4:30:91:0.044:2	./.	./.	./.
chrX	32663133	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,3:31:18:0.167:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	34148689	rs191524414	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,8:30:17:0.471:2	./.	./.	./.	./.
chrX	34148877	rs5973088	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:44,4:33:48:0.083:2	./.	./.	./.	0/1:44,8:33:52:0.154:2	0/1:16,6:35:22:0.273:2	0/1:85,5:32:90:0.056:2	0/1:49,8:32:57:0.140:2	./.	./.	./.
chrX	34148882	rs5973089	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:46,8:23:54:0.148:2	./.	0/1:89,4:31:93:0.043:2	0/1:57,5:29:62:0.081:2	./.	./.	./.
chrX	34149267	rs1811716	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,37:32:89:0.416:2	./.	./.	./.	0/1:0,58:32:58:1.00:2
chrX	34149690	rs367563899	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,14:26:33:0.424:2	./.	./.	./.	./.
chrX	34674970	rs5928617	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,26:29:51:0.510:2	0/1:5,21:32:26:0.808:2	./.	./.	./.	0/1:7,46:31:54:0.868:2	./.	./.	./.	./.	0/1:0,27:31:27:1.00:2
chrX	34675024	rs182477789	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,77:31:189:0.407:2	./.	./.	./.
chrX	34961306	rs41305183	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,69:33:71:0.972:2	./.	./.	./.	./.	./.	./.	./.
chrX	34962909	rs6632131	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,53:33:53:1.00:2
chrX	35645070	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,46:32:104:0.442:2	./.	./.	./.	./.
chrX	35820265	rs5928990	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,159:31:160:0.994:2	0/1:0,93:31:93:1.00:2	0/1:0,27:31:27:1.00:2	./.	0/1:1,149:31:150:0.993:2	./.	0/1:1,189:32:190:0.995:2	./.	./.	0/1:93,100:32:193:0.518:2	0/1:0,93:32:93:1.00:2
chrX	35820425	rs1410961	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,63:31:64:0.984:2	0/1:0,49:32:49:1.00:2	0/1:0,14:32:14:1.00:2	./.	0/1:0,28:30:28:1.00:2	./.	0/1:1,87:31:88:0.989:2	./.	./.	0/1:32,28:31:60:0.467:2	0/1:0,31:31:31:1.00:2
chrX	35820696	rs1410962	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,99:30:99:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,9:30:9:1.00:2	./.	0/1:0,23:29:23:1.00:2	./.	0/1:0,79:30:79:1.00:2	./.	./.	0/1:46,36:30:82:0.439:2	0/1:0,61:30:61:1.00:2
chrX	35820795	rs5973488	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,146:29:146:1.00:2	0/1:0,80:29:80:1.00:2	0/1:0,33:30:33:1.00:2	./.	0/1:2,62:29:64:0.969:2	./.	0/1:0,168:29:168:1.00:2	./.	./.	0/1:88,63:30:151:0.417:2	0/1:0,103:28:103:1.00:2
chrX	35821055	rs4829390	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,46:33:46:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,5:33:5:1.00:2	./.	0/1:0,10:33:10:1.00:2	./.	0/1:1,34:32:35:0.971:2	./.	./.	0/1:59,19:31:78:0.244:2	0/1:0,23:32:23:1.00:2
chrX	35821056	rs4829391	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,46:32:46:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,5:32:5:1.00:2	./.	0/1:0,10:33:10:1.00:2	./.	0/1:1,34:32:35:0.971:2	./.	./.	0/1:58,19:32:77:0.247:2	0/1:0,23:32:23:1.00:2
chrX	35821127	rs4829392	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,82:32:82:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,12:32:12:1.00:2	./.	0/1:0,18:32:18:1.00:2	./.	0/1:0,58:32:58:1.00:2	0/1:114,5:34:119:0.042:2	./.	0/1:64,33:32:97:0.340:2	0/1:2,50:32:52:0.962:2
chrX	35821302	rs4829393	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,114:32:114:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,14:33:14:1.00:2	./.	0/1:1,40:32:42:0.976:2	./.	0/1:0,78:32:78:1.00:2	./.	./.	0/1:52,42:32:94:0.447:2	0/1:0,54:33:54:1.00:2
chrX	35821308	rs4829394	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,122:31:122:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,15:31:15:1.00:2	./.	0/1:1,43:30:44:0.977:2	./.	0/1:0,90:31:90:1.00:2	./.	./.	0/1:56,44:31:100:0.440:2	0/1:0,55:32:55:1.00:2
chrX	35821464	rs4829162	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,127:32:128:0.992:2	0/1:0,138:32:138:1.00:2	0/1:0,32:32:32:1.00:2	./.	0/1:0,78:32:78:1.00:2	./.	0/1:0,128:32:128:1.00:2	./.	./.	0/1:71,48:32:119:0.403:2	0/1:0,119:32:119:1.00:2
chrX	35821558	rs2149701	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,64:31:64:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,2:29:2:1.00:2	./.	0/1:0,26:32:26:1.00:2	./.	0/1:0,35:31:35:1.00:2	./.	./.	0/1:25,19:32:44:0.432:2	0/1:0,33:32:33:1.00:2
chrX	35821763	rs1571471	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,56:33:56:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,11:31:11:1.00:2	./.	0/1:0,26:32:26:1.00:2	./.	0/1:0,38:33:38:1.00:2	./.	./.	0/1:32,31:33:63:0.492:2	0/1:2,37:33:39:0.949:2
chrX	35821789	rs1571472	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,43:33:43:1.00:2	0/1:0,25:33:25:1.00:2	0/1:0,5:33:5:1.00:2	./.	0/1:0,24:32:24:1.00:2	./.	0/1:0,20:32:20:1.00:2	./.	./.	0/1:22,21:33:43:0.488:2	0/1:1,29:33:30:0.967:2
chrX	35938038	rs138479255	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,14:31:17:0.824:2	./.	./.	./.	./.	./.	0/1:1,64:33:65:0.985:2	./.	./.
chrX	35938045	rs6629019	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,66:31:120:0.550:2	./.	./.	0/1:2,67:30:69:0.971:2	./.
chrX	35938096	rs148872967	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,36:31:76:0.474:2	./.	./.	./.	./.
chrX	35966543	rs11798799	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,36:31:73:0.493:2	./.
chrX	35969297	rs2336029	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,78:31:184:0.424:2	./.	./.	0/1:0,171:31:171:1.00:2	./.
chrX	35969998	rs189129830	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,72:32:73:0.986:2	./.	./.	./.	./.	./.	./.
chrX	35988996	rs6632446	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,79:32:164:0.482:2	./.	./.	0/1:81,95:33:176:0.540:2	./.
chrX	35993454	rs6632450	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,9:32:30:0.300:2	./.	./.	0/1:37,24:31:61:0.393:2	./.
chrX	36007614	rs6629027	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,5:33:13:0.385:2	./.	./.	./.	0/1:30,31:32:61:0.508:2	./.	./.	0/1:71,36:32:107:0.336:2	./.
chrX	36057261	rs6632464	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,12:32:28:0.429:2	./.	./.	./.	0/1:61,48:33:109:0.440:2	./.	./.	0/1:75,74:33:149:0.497:2	./.
chrX	36090070	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,3:32:28:0.107:2	./.	./.	./.	./.	./.
chrX	36156496	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:32:132:0.030:2	./.
chrX	36303871	rs6629068	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,17:29:43:0.395:2	./.	./.	./.	0/1:99,62:29:161:0.385:2	./.	./.	0/1:88,58:30:146:0.397:2	./.
chrX	36371719	rs41309695	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,40:31:73:0.548:2	./.	./.	0/1:33,36:31:69:0.522:2	./.
chrX	36385083	rs183168731	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,24:30:67:0.358:2	./.	./.	./.
chrX	36385156	rs6632593	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,50:34:111:0.450:2	./.	./.	./.	./.
chrX	36403036	rs6527569	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,17:30:37:0.459:2	./.	./.	./.	0/1:93,65:31:158:0.411:2	./.	./.	./.	./.
chrX	37027035	rs61730915	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,4:31:5:0.800:2	./.	./.	./.	./.	./.	./.
chrX	37028127	rs73631164	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:20,16:29:36:0.444:2	0/1:10,16:28:26:0.615:2	./.	./.	./.	./.	./.	0/1:10,15:30:25:0.600:2	0/1:0,26:28:26:1.00:2	./.	./.
chrX	37028209	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,3:31:31:0.097:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	37028425	rs145580328	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,3:33:26:0.115:2	./.
chrX	37028975	rs200407931	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:31:162:0.025:2	./.
chrX	37028980	rs200774091	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:32:185:0.022:2	./.
chrX	37029254	rs1995914	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:35,30:33:65:0.462:2	0/1:13,19:32:32:0.594:2	./.	./.	./.	./.	./.	0/1:35,25:30:60:0.417:2	0/1:0,39:32:39:1.00:2	./.	./.
chrX	37431402	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.
chrX	37431597	rs186317346	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,11:30:11:1.00:2	./.	./.	./.	./.	./.	./.
chrX	37518806	rs12009345	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:45,43:30:88:0.489:2	0/1:23,26:30:49:0.531:2	0/1:6,7:29:13:0.538:2	./.	./.	./.	0/1:87,85:29:172:0.494:2	0/1:79,79:30:160:0.500:2	./.	0/1:62,58:31:122:0.483:2	./.
chrX	37527659	rs28503960	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:85,58:31:143:0.406:2	0/1:60,42:30:102:0.412:2	0/1:5,5:30:10:0.500:2	./.	./.	./.	0/1:75,91:30:166:0.548:2	0/1:104,95:29:199:0.477:2	./.	0/1:104,92:30:197:0.469:2	./.
chrX	37663315	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:33:185:0.022:2	./.	./.
chrX	37701048	rs11771	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,41:33:95:0.432:2	./.
chrX	37932886	rs4827330	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,93:29:183:0.508:2	./.	0/1:86,78:30:164:0.476:2	./.
chrX	37948832	rs4827331	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,83:30:186:0.446:2	./.	0/1:97,86:30:184:0.470:2	./.
chrX	37967868	rs5918476	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,91:31:196:0.464:2	./.	0/1:104,94:31:198:0.475:2	./.
chrX	38009121	rs35318931	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,66:32:66:1.00:2	./.	./.
chrX	38033433	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:80,4:29:84:0.048:2	./.	./.	./.	./.	./.	./.
chrX	38144822	rs12688514	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,21:31:81:0.259:2	./.
chrX	38144856	rs12687163	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,43:32:105:0.410:2	./.
chrX	38144988	rs78736275	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:93,79:30:172:0.459:2	0/1:71,80:31:151:0.530:2	0/1:11,12:30:23:0.522:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	38145021	rs62636730	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,114:33:116:0.983:2	./.	./.
chrX	38145033	rs111787313	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:96,82:30:179:0.461:2	0/1:66,65:31:131:0.496:2	0/1:13,15:30:28:0.536:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	38145646	rs201131185	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:34:4:1.00:2	./.	./.
chrX	38145714	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,6:17:19:0.316:2	./.	./.	./.
chrX	38145732	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,4:25:41:0.098:2	./.	./.
chrX	38145735	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,4:27:55:0.073:2	./.	./.	./.	./.	./.	./.	./.	0/1:37,7:32:44:0.159:2	./.	./.
chrX	38145753	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,15:15:61:0.254:2	./.	./.
chrX	38145911	rs5917557	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:104,77:30:181:0.425:2	0/1:86,79:31:165:0.479:2	./.	0/1:3,142:29:145:0.979:2	0/1:2,130:29:132:0.985:2	./.	0/1:109,78:30:187:0.417:2	0/1:107,86:30:193:0.446:2	./.	./.	./.
chrX	38146029	rs147619484	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:80,84:31:164:0.512:2	0/1:52,49:32:101:0.485:2	0/1:8,6:32:14:0.429:2	./.	./.	./.	./.	./.	0/1:1,95:32:96:0.990:2	./.	./.
chrX	38147170	rs1801688	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:105,88:33:193:0.456:2	0/1:90,80:32:170:0.471:2	0/1:23,16:31:39:0.410:2	./.	./.	./.	./.	./.	0/1:4,181:33:185:0.978:2	./.	./.
chrX	38147269	rs41312104	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,87:32:87:1.00:2	./.	./.
chrX	38150201	rs62635008	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:100,87:33:187:0.465:2	0/1:60,56:33:116:0.483:2	0/1:17,14:33:31:0.452:2	./.	./.	./.	./.	./.	0/1:1,116:33:117:0.991:2	./.	./.
chrX	38156660	rs62635003	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:59,39:33:98:0.398:2	0/1:50,30:33:80:0.375:2	0/1:7,3:33:10:0.300:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	38156677	rs1801687	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,29:31:79:0.367:2	0/1:39,22:32:61:0.361:2	./.	./.	./.	./.	./.	./.	0/1:0,52:33:52:1.00:2	./.	./.
chrX	38158290	rs1801686	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,11:32:15:0.733:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	38176612	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:33:154:0.026:2
chrX	38182130	rs111631988	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,96:30:96:1.00:2	./.	./.
chrX	38226603	rs1800321	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:58,51:33:109:0.468:2	0/1:37,38:32:75:0.507:2	./.	0/1:0,72:33:72:1.00:2	0/1:1,46:32:49:0.979:2	./.	0/1:33,54:32:88:0.621:2	./.	./.	./.	./.
chrX	38240587	rs73196229	T	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,13:30:37:0.351:2	0/1:14,14:31:28:0.500:2	./.	0/1:0,27:29:27:1.00:2	0/1:1,16:29:17:0.941:2	./.	0/1:13,22:30:35:0.629:2	./.	./.	./.	./.
chrX	38260531	rs149795059	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,4:32:12:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	38664423	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:32:125:0.032:2	./.	./.	./.	./.
chrX	39911528	rs200163930	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:79,14:18:93:0.151:2	./.	./.	0/1:48,10:14:58:0.172:2	./.	0/1:38,7:16:45:0.156:2	./.	0/1:70,12:14:82:0.146:2	./.	0/1:70,8:17:79:0.103:2	0/1:63,8:16:71:0.113:2
chrX	39916407	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:32:96:0.042:2	./.	./.
chrX	39923645	rs368780561	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,29:31:29:1.00:2	./.	./.	./.	./.	./.	./.	./.
chrX	39931935	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,5:26:69:0.072:2
chrX	39932808	rs144606152	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,48:30:53:0.906:2	./.	./.	./.	./.	./.	./.	./.
chrX	39932907	rs6520618	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,29:30:71:0.408:2	0/1:22,23:29:45:0.511:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	39933339	rs5917933	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,23:29:23:1.00:2	0/1:0,20:30:20:1.00:2	./.	0/1:0,14:30:14:1.00:2	0/1:0,11:29:11:1.00:2	0/1:0,15:28:15:1.00:2	0/1:11,10:28:21:0.476:2	0/1:20,11:30:31:0.355:2	0/1:0,13:28:14:1.00:2	0/1:1,18:30:20:0.947:2	0/1:0,14:27:14:1.00:2
chrX	39933693	rs145004764	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,25:31:27:0.926:2	./.	./.	./.	./.	./.
chrX	40440287	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.
chrX	40450548	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,4:32:75:0.053:2	./.	./.	./.	./.	./.	./.
chrX	40495957	rs34678039	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,52:31:103:0.505:2	./.
chrX	40496260	rs146808310	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,74:30:166:0.446:2	0/1:48,45:30:93:0.484:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	40506697	rs6610447	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,16:32:16:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,19:34:19:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,16:32:16:1.00:2	0/1:15,23:33:38:0.605:2	0/1:0,33:32:33:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,10:32:10:1.00:2
chrX	40552032	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,4:32:95:0.042:2	./.	./.	./.	./.	./.	./.	./.
chrX	40560442	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,87:31:190:0.458:2	./.	./.	./.	./.
chrX	40573157	rs6520683	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,24:28:24:1.00:2	0/1:27,10:31:37:0.270:2	./.	./.	./.	./.
chrX	40996078	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,4:31:80:0.050:2	./.	./.	./.	./.	./.	./.	./.
chrX	41025225	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:27:193:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	41055517	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:151,5:31:156:0.032:2	./.	./.	./.	./.	./.	./.	./.
chrX	41055861	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:33:133:0.030:2	./.
chrX	41202046	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:31:104:0.038:2	./.	./.	./.	./.	./.
chrX	41307195	rs3810732	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:32:140:0.029:2	./.	./.	./.	./.	./.
chrX	41419024	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,4:31:48:0.083:2	./.	./.
chrX	41556195	rs9594	A	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,78:32:78:1.00:2	0/1:0,48:32:48:1.00:2	0/1:2,7:32:9:0.778:2	./.	0/1:1,28:31:29:0.966:2	./.	0/1:26,34:31:60:0.567:2	0/1:26,28:31:54:0.519:2	0/1:0,32:32:32:1.00:2	0/1:1,64:31:65:0.985:2	0/1:0,45:31:45:1.00:2
chrX	41587218	rs1023065	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,63:31:63:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,5:29:5:1.00:2	./.	0/1:0,33:32:33:1.00:2	./.	0/1:32,20:32:52:0.385:2	0/1:27,34:32:61:0.557:2	0/1:0,47:32:47:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,43:32:43:1.00:2
chrX	41587569	rs1028913	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,90:33:90:1.00:2	0/1:0,47:32:47:1.00:2	0/1:6,7:32:13:0.538:2	./.	0/1:0,38:32:38:1.00:2	./.	0/1:39,29:33:68:0.426:2	0/1:27,35:32:62:0.565:2	0/1:0,51:33:51:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,44:32:44:1.00:2
chrX	41588169	rs5917445	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,73:32:73:1.00:2	0/1:0,40:32:40:1.00:2	0/1:3,8:33:11:0.727:2	./.	0/1:0,42:31:42:1.00:2	./.	0/1:36,41:32:77:0.532:2	0/1:50,38:32:88:0.432:2	0/1:0,66:33:66:1.00:2	0/1:0,68:32:68:1.00:2	0/1:4,64:32:69:0.941:2
chrX	43591036	rs6323	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:39,49:31:88:0.557:2	0/1:26,32:31:58:0.552:2	./.	0/1:0,37:32:37:1.00:2	0/1:1,34:31:35:0.971:2	0/1:0,49:31:49:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,100:32:100:1.00:2	0/1:0,56:32:56:1.00:2	0/1:47,47:31:94:0.500:2	0/1:0,69:32:69:1.00:2
chrX	43603391	rs1137070	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,41:33:91:0.451:2	0/1:27,39:32:66:0.591:2	0/1:1,5:32:6:0.833:2	0/1:2,71:33:73:0.973:2	0/1:1,39:32:40:0.975:2	0/1:2,47:32:49:0.959:2	0/1:0,64:33:64:1.00:2	0/1:1,75:32:76:0.987:2	0/1:0,53:33:53:1.00:2	0/1:32,50:32:82:0.610:2	0/1:0,51:33:51:1.00:2
chrX	43662605	rs149395667	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,14:33:14:1.00:2	./.	./.
chrX	44091828	rs3747354	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,61:32:137:0.445:2	./.
chrX	44703935	rs1045031	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,57:29:141:0.404:2	0/1:59,69:29:128:0.539:2	./.	./.	./.
chrX	44918254	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,5:30:87:0.057:2	./.	./.	0/1:100,4:32:104:0.038:2	./.	./.
chrX	44918302	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,5:28:135:0.037:2	./.	./.	0/1:143,4:33:147:0.027:2	./.	./.
chrX	44929077	rs2230018	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,11:32:16:0.688:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	44935984	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:112,4:31:116:0.034:2	./.	./.	./.	./.	./.	./.
chrX	44938563	rs20539	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,71:30:72:0.986:2	./.	./.	./.	./.	./.	0/1:2,123:31:125:0.984:2
chrX	44949139	rs199635398	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,13:19:119:0.109:2
chrX	45011018	rs143817529	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,40:31:78:0.513:2	./.	./.	./.
chrX	45051111	rs1132201	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,20:31:21:0.952:2	0/1:0,33:31:33:1.00:2	./.	0/1:33,37:31:70:0.529:2	./.	./.	0/1:0,28:31:28:1.00:2
chrX	46360678	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:33:74:0.054:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	46472826	rs3208940	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:22,14:31:36:0.389:2	0/1:21,15:31:36:0.417:2	./.	./.	0/1:0,9:28:9:1.00:2	./.	./.	0/1:26,14:31:40:0.350:2	./.	0/1:12,14:30:26:0.538:2	0/1:0,16:31:16:1.00:2
chrX	46521529	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:134,4:31:138:0.029:2	./.	./.	./.	./.
chrX	46618321	rs1056846	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:29:3:1.00:2	./.	0/1:0,31:30:31:1.00:2	./.	./.	0/1:48,24:29:72:0.333:2	./.	0/1:18,16:30:34:0.471:2	0/1:0,13:31:13:1.00:2
chrX	46918326	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,4:33:32:0.125:2	./.	./.
chrX	46952353	rs5952997	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,31:31:31:1.00:2
chrX	47040634	rs143203694	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,39:31:41:0.951:2	./.	./.	./.	./.	./.	./.
chrX	47057647	rs4468050	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,148:28:148:1.00:2	0/1:1,71:28:72:0.986:2	0/1:0,25:29:25:1.00:2	0/1:0,85:28:85:1.00:2	0/1:0,88:28:88:1.00:2	0/1:0,86:28:86:1.00:2	0/1:1,188:28:189:0.995:2	0/1:0,178:29:178:1.00:2	0/1:0,114:29:114:1.00:2	0/1:0,142:29:142:1.00:2	0/1:0,94:28:94:1.00:2
chrX	47062534	rs2070169	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:13,8:31:21:0.381:2	./.	./.	./.	./.	./.	./.	./.	0/1:2,110:32:112:0.982:2
chrX	47064817	rs5953007	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,74:30:75:0.987:2
chrX	47065186	rs4339766	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:29:4:1.00:2	./.
chrX	47083003	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:34:194:0.021:2	./.	./.	./.
chrX	47106715	rs10126669	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,118:31:118:1.00:2
chrX	47107071	rs151106709	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,80:28:180:0.444:2	./.
chrX	47307591	rs148848609	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,15:33:30:0.500:2	./.
chrX	47308332	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,4:31:56:0.071:2	./.	./.
chrX	47308615	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:32:111:0.036:2	./.
chrX	47343018	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,14:32:32:0.438:2	./.	./.	./.	./.
chrX	47343155	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:32:143:0.028:2	./.	./.	./.
chrX	47343254	rs2071778	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,40:30:41:0.976:2	0/1:0,54:32:54:1.00:2	./.	0/1:0,35:33:35:1.00:2	0/1:38,28:32:66:0.424:2	0/1:0,45:32:45:1.00:2
chrX	47344142	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,3:31:29:0.103:2	./.	./.	./.
chrX	47444663	rs1043428	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,41:31:87:0.471:2	0/1:41,27:32:68:0.397:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	47444879	rs5953060	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,71:32:71:1.00:2	0/1:0,56:31:56:1.00:2	./.	./.	./.	0/1:0,43:33:43:1.00:2	0/1:42,32:33:74:0.432:2	./.	0/1:0,50:32:50:1.00:2	0/1:46,38:33:84:0.452:2	./.
chrX	47444985	rs4898	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,91:29:91:1.00:2	0/1:1,65:30:66:0.985:2	./.	./.	./.	0/1:0,42:29:42:1.00:2	0/1:66,88:30:154:0.571:2	./.	0/1:1,103:31:104:0.990:2	0/1:50,58:30:108:0.537:2	./.
chrX	47464734	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:34:92:0.043:2
chrX	47466361	rs1142636	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:66,43:29:109:0.394:2	0/1:32,27:28:59:0.458:2	./.	./.	./.	./.	0/1:0,128:30:128:1.00:2	./.	./.	0/1:54,40:29:94:0.426:2	./.
chrX	47466425	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:32:120:0.033:2	./.	./.	./.	./.
chrX	47478904	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	47483800	rs1048118	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:48,57:31:105:0.543:2	0/1:32,29:32:61:0.475:2	./.	./.	./.	./.	0/1:105,60:30:165:0.364:2	./.	./.	./.	./.
chrX	47498705	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:32:118:0.034:2	./.	./.	./.	./.	./.
chrX	47658046	rs723119	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:54,61:29:115:0.530:2	0/1:41,23:29:64:0.359:2	0/1:0,15:29:15:1.00:2	./.	./.	0/1:0,44:29:44:1.00:2	0/1:84,37:29:121:0.306:2	0/1:73,57:29:130:0.438:2	./.	0/1:0,112:29:112:1.00:2	0/1:1,67:30:68:0.985:2
chrX	47662695	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,5:33:179:0.028:2	./.
chrX	47662972	rs909713	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:61,54:32:115:0.470:2	0/1:34,28:32:63:0.452:2	0/1:0,6:33:6:1.00:2	./.	./.	0/1:0,48:31:48:1.00:2	0/1:43,49:32:92:0.533:2	0/1:55,40:32:95:0.421:2	./.	0/1:2,111:32:114:0.982:2	0/1:0,76:32:76:1.00:2
chrX	47663178	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,4:32:44:0.091:2	./.	./.	./.	./.	./.	./.
chrX	47663200	rs1207505	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:56,57:32:113:0.504:2	0/1:46,43:33:89:0.483:2	0/1:0,14:32:14:1.00:2	./.	./.	0/1:0,59:31:59:1.00:2	0/1:38,31:32:69:0.449:2	0/1:63,56:32:119:0.471:2	./.	0/1:0,133:33:133:1.00:2	0/1:0,80:32:80:1.00:2
chrX	47663312	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,4:34:148:0.027:2	./.	./.	./.
chrX	47663856	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,4:31:65:0.062:2	./.	./.
chrX	47705674	rs183846665	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,5:31:21:0.238:2	0/1:7,4:30:11:0.364:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	47774599	rs186251256	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,10:30:19:0.526:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	47918169	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,3:31:22:0.136:2	./.	./.	./.	./.
chrX	47918205	rs501128	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:24,21:33:45:0.467:2	0/1:16,12:33:28:0.429:2	0/1:0,3:33:3:1.00:2	./.	./.	0/1:0,22:33:22:1.00:2	0/1:0,30:32:30:1.00:2	0/1:33,23:32:56:0.411:2	0/1:0,28:33:28:1.00:2	./.	./.
chrX	47969350	rs372817672	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,5:32:180:0.028:2
chrX	47969415	rs182221947	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,81:32:168:0.482:2	./.	./.	./.	./.
chrX	47969658	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:109,4:32:113:0.035:2	./.	./.	./.	./.	./.	./.	./.
chrX	47969900	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,6:30:198:0.030:2	./.	./.	./.	./.
chrX	47969922	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,6:32:198:0.030:2	./.	./.	./.	./.
chrX	47969967	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:31:179:0.022:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	47976402	rs73207862	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,93:33:95:0.979:2
chrX	47978916	rs76632556	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,7:33:139:0.050:2	./.	./.
chrX	47979011	rs111780663	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:161,9:28:170:0.053:2	./.	./.	./.	./.	0/1:184,10:31:194:0.052:2	0/1:176,5:30:181:0.028:2
chrX	48049666	rs5906557	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,144:32:144:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,58:31:58:1.00:2	0/1:1,25:32:26:0.962:2	0/1:0,63:32:63:1.00:2	0/1:4,59:32:63:0.937:2	0/1:4,100:31:104:0.962:2	0/1:2,47:33:49:0.959:2	0/1:4,120:32:124:0.968:2	0/1:0,75:32:75:1.00:2
chrX	48049689	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:32:108:0.037:2	./.
chrX	48049695	rs150405804	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:32:66:0.061:2	./.	./.	./.	./.
chrX	48054470	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:32:195:0.026:2	./.	./.	./.
chrX	48054740	rs4824675	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,133:32:133:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,63:32:63:1.00:2	0/1:1,104:32:105:0.990:2	0/1:1,180:32:181:0.994:2	0/1:2,73:33:75:0.973:2	0/1:1,151:32:152:0.993:2	0/1:0,94:32:94:1.00:2
chrX	48117223	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:32:170:0.024:2	./.	./.	./.
chrX	48121222	rs140029421	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,83:33:190:0.437:2	./.
chrX	48121242	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:31:160:0.025:2	./.	./.	./.	./.	./.
chrX	48121257	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:31:166:0.024:2	./.	./.	./.	./.	./.
chrX	48156264	rs12840392	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:51,125:31:176:0.710:2	0/1:44,151:31:195:0.774:2	./.	0/1:54,141:31:195:0.723:2	0/1:79,109:32:188:0.580:2	./.	./.	./.	0/1:58,131:32:189:0.693:2	0/1:149,40:32:189:0.212:2	0/1:46,135:31:181:0.746:2
chrX	48156276	.	G	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:148,29:31:178:0.164:2	0/1:169,24:31:193:0.124:2	./.	./.	./.	./.	./.	./.	0/1:122,59:32:181:0.326:2	./.	./.
chrX	48156278	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:111,12:31:123:0.098:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	48161141	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:31:143:0.028:2	./.	./.	./.	./.
chrX	48161189	rs6609702	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,160:32:161:0.994:2	0/1:1,127:32:128:0.992:2	./.	0/1:2,134:33:136:0.985:2	0/1:2,63:31:65:0.969:2	./.	0/1:123,4:34:127:0.031:2	./.	0/1:2,144:33:146:0.986:2	0/1:57,66:33:124:0.537:2	0/1:0,135:32:135:1.00:2
chrX	48163105	rs4598385	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,134:31:138:0.971:2	0/1:0,134:30:134:1.00:2	./.	0/1:0,134:30:134:1.00:2	0/1:3,46:29:49:0.939:2	./.	./.	./.	0/1:2,145:31:147:0.986:2	0/1:77,78:30:155:0.503:2	0/1:2,113:30:115:0.983:2
chrX	48163706	rs3125189	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:177,4:33:181:0.022:2	0/1:69,7:32:76:0.092:2	./.	./.	./.	0/1:179,4:32:184:0.022:2	0/1:181,5:34:186:0.027:2	./.	./.	./.
chrX	48163717	rs3901052	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:4,189:33:193:0.979:2	0/1:4,161:33:165:0.976:2	./.	0/1:4,168:33:172:0.977:2	0/1:2,114:32:116:0.983:2	./.	./.	./.	0/1:4,173:34:177:0.977:2	0/1:102,82:33:184:0.446:2	0/1:6,165:33:171:0.965:2
chrX	48163718	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:34:185:0.022:2	./.	./.	./.
chrX	48163721	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2
chrX	48163743	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2
chrX	48164240	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,6:32:184:0.033:2	./.	./.	./.	./.
chrX	48209013	rs144540598	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,113:29:117:0.966:2	./.	./.	./.	./.	./.
chrX	48213465	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,89:32:187:0.476:2	./.	./.	./.	./.
chrX	48262939	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,5:27:178:0.028:2	0/1:186,5:31:191:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,5:31:192:0.026:2
chrX	48317386	rs17281188	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,46:30:133:0.346:2	./.	./.	./.	./.
chrX	48336440	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,4:33:32:0.125:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	48372553	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:31:52:0.077:2	./.	./.
chrX	48382174	rs3048	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,21:33:48:0.438:2	0/1:21,13:32:34:0.382:2	0/1:2,5:32:7:0.714:2	0/1:2,33:32:35:0.943:2	./.	./.	./.	0/1:33,32:32:65:0.492:2	./.	./.	0/1:0,28:31:28:1.00:2
chrX	48418126	rs2293948	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:0,70:33:70:1.00:2	0/1:0,43:32:43:1.00:2	./.	0/1:0,55:32:55:1.00:2	./.	./.	./.	0/1:55,48:32:103:0.466:2	0/1:1,37:32:38:0.974:2	./.	0/1:0,44:33:44:1.00:2
chrX	48418441	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,54:29:120:0.450:2	./.	./.	./.
chrX	48418568	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:131,4:31:135:0.030:2	./.	./.	./.	./.	./.
chrX	48418659	rs235836	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,138:30:139:0.993:2	0/1:0,64:30:64:1.00:2	0/1:13,7:31:20:0.350:2	0/1:0,93:30:94:1.00:2	./.	./.	./.	0/1:85,89:30:174:0.511:2	0/1:0,101:31:101:1.00:2	./.	0/1:0,93:31:93:1.00:2
chrX	48434928	rs200342072	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,11:13:81:0.138:2	./.
chrX	48434952	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,11:11:50:0.220:2	./.	./.	./.	./.	./.
chrX	48434994	.	T	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:50,7:24:57:0.123:2	./.	./.	./.	./.	./.	0/1:72,8:20:80:0.100:2	0/1:71,10:15:81:0.123:2	./.	0/1:82,14:18:96:0.146:2	./.
chrX	48460314	rs235842	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,142:30:142:1.00:2	0/1:0,84:29:84:1.00:2	0/1:0,26:31:27:1.00:2	0/1:1,99:30:100:0.990:2	0/1:0,101:29:101:1.00:2	0/1:1,105:29:106:0.991:2	0/1:1,151:30:152:0.993:2	0/1:1,172:30:173:0.994:2	0/1:0,116:30:116:1.00:2	0/1:0,125:30:125:1.00:2	0/1:0,91:30:91:1.00:2
chrX	48620183	rs5906707	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:53,42:30:97:0.442:2	0/1:41,47:32:88:0.534:2	./.	0/1:2,79:30:81:0.975:2	./.	./.	./.	./.	./.	./.	./.
chrX	48681187	rs61735967	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,51:30:54:0.944:2	./.	./.	./.	./.	./.	./.
chrX	48751471	rs1128363	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:31:69:1.00:2	0/1:2,33:29:35:0.943:2	0/1:10,10:29:20:0.500:2	0/1:0,41:30:41:1.00:2	0/1:0,63:30:63:1.00:2	./.	0/1:67,55:30:122:0.451:2	0/1:62,65:29:127:0.512:2	0/1:0,55:31:55:1.00:2	./.	./.
chrX	48771456	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,4:32:188:0.021:2	./.
chrX	48822646	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:59,8:22:67:0.119:2	./.	./.	./.	./.	./.	./.	0/1:141,19:11:161:0.119:2	./.	0/1:68,6:20:75:0.081:2	./.
chrX	48826518	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:33:185:0.022:2	./.	./.	./.	./.
chrX	48832437	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:31:152:0.026:2	./.	./.	./.	./.	./.
chrX	48839444	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,3:32:48:0.063:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	48847497	rs11545861	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,7:33:7:1.00:2	./.	./.	0/1:3,38:32:41:0.927:2	0/1:25,27:32:52:0.519:2	0/1:38,33:32:71:0.465:2	./.	0/1:0,37:33:37:1.00:2	0/1:0,23:32:23:1.00:2
chrX	48888074	rs3027472	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,30:31:30:1.00:2	./.	./.	0/1:3,113:31:118:0.974:2	0/1:66,76:31:142:0.535:2	0/1:1,150:32:151:0.993:2	./.	0/1:3,165:32:168:0.982:2	0/1:2,120:31:122:0.984:2
chrX	48924896	rs55654138	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:28:3:1.00:2	./.	./.	./.	./.	./.
chrX	48929569	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:31:159:0.025:2	./.	./.	./.
chrX	48933234	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:31:96:0.042:2	./.	./.	./.	./.	./.
chrX	48933258	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,4:31:99:0.040:2	./.	./.	./.	./.	./.
chrX	49021040	rs185804361	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,77:32:77:1.00:2	./.	./.
chrX	49021052	rs12843494	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,3:31:9:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	49021256	rs5906744	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,97:30:97:1.00:2	0/1:0,56:30:56:1.00:2	0/1:0,11:31:11:1.00:2	0/1:1,87:31:88:0.989:2	0/1:0,56:30:56:1.00:2	0/1:0,93:30:93:1.00:2	0/1:0,111:31:111:1.00:2	0/1:0,138:30:139:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,117:31:117:1.00:2	0/1:0,69:30:69:1.00:2
chrX	49021537	rs5905720	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,61:33:61:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,99:33:99:1.00:2	0/1:0,129:32:129:1.00:2	0/1:0,41:34:41:1.00:2	0/1:0,54:33:54:1.00:2	0/1:0,36:33:36:1.00:2
chrX	49021575	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:30:71:0.056:2	./.
chrX	49022700	rs4824462	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,19:30:19:1.00:2	0/1:0,4:29:4:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,12:27:12:1.00:2	0/1:0,31:29:31:1.00:2	0/1:0,15:28:15:1.00:2	0/1:0,15:28:15:1.00:2	0/1:0,13:28:13:1.00:2
chrX	49033379	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,40:31:40:1.00:2	./.	./.
chrX	49034635	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:30:194:0.026:2	./.	./.	./.	./.
chrX	49062240	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:30:104:0.038:2	./.
chrX	49071964	rs2075866	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:62,44:30:106:0.415:2	0/1:60,33:29:94:0.355:2	0/1:5,9:29:14:0.643:2	./.	0/1:0,75:29:75:1.00:2	./.	./.	./.	0/1:0,72:30:72:1.00:2	./.	./.
chrX	49077508	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:32:176:0.023:2	./.	./.	./.
chrX	49081291	rs2235127	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:46,45:29:91:0.495:2	0/1:26,25:31:51:0.490:2	0/1:5,8:29:13:0.615:2	./.	0/1:0,55:30:55:1.00:2	./.	./.	./.	0/1:0,47:31:47:1.00:2	./.	./.
chrX	49103224	rs2294020	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:15,16:32:31:0.516:2	0/1:13,5:32:18:0.278:2	0/1:2,2:33:4:0.500:2	./.	0/1:0,12:30:12:1.00:2	./.	./.	./.	0/1:0,16:31:16:1.00:2	./.	./.
chrX	49113312	rs2232367	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,65:28:124:0.524:2	./.
chrX	49142343	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,6:31:112:0.055:2	./.
chrX	49458781	rs143224517	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,30:32:85:0.353:2	0/1:23,25:32:48:0.521:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	49645160	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:31:80:0.050:2	./.	./.	./.
chrX	49646968	rs199555442	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:21,9:20:30:0.300:2	./.	./.	./.	./.	./.	0/1:16,7:17:23:0.304:2	./.	./.	0/1:21,7:20:28:0.250:2	./.
chrX	49767832	rs456615	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:33:25:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,10:33:10:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,23:33:23:1.00:2
chrX	49767835	rs456617	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:32:25:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,13:33:13:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,23:32:23:1.00:2
chrX	49773567	rs73490086	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,90:32:191:0.471:2	./.
chrX	50119085	rs4074320	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,83:31:84:0.988:2	./.	./.	0/1:0,168:31:168:1.00:2	./.	./.	./.	./.
chrX	50129369	rs5961179	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,78:31:79:0.987:2	./.	./.	0/1:0,112:32:112:1.00:2	./.	./.	0/1:70,70:32:140:0.500:2	./.
chrX	50146570	rs4143304	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,7:30:14:0.500:2	0/1:0,47:30:47:1.00:2	./.	0/1:0,36:30:36:1.00:2	0/1:1,57:30:58:0.983:2	./.	./.	0/1:34,23:30:57:0.404:2	./.
chrX	50147084	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:31:57:0.070:2	./.	./.	./.	./.	./.
chrX	50213444	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:30:68:0.059:2	./.	./.
chrX	50339914	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,5:27:73:0.069:2
chrX	50350674	rs3747282	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:24,21:32:45:0.467:2	0/1:24,11:31:35:0.314:2	./.	0/1:2,33:33:35:0.943:2	./.	./.	./.	0/1:0,61:32:61:1.00:2	./.	0/1:22,13:31:35:0.371:2	./.
chrX	50350728	rs143151534	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:43,4:32:47:0.085:2	0/1:31,3:32:34:0.088:2	./.	0/1:17,3:32:20:0.150:2	./.	./.	./.	0/1:28,13:31:41:0.317:2	./.	0/1:25,4:27:29:0.138:2	./.
chrX	50350778	rs112781654	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:70,9:33:79:0.114:2	0/1:41,3:33:44:0.068:2	./.	0/1:50,5:34:55:0.091:2	./.	./.	./.	0/1:111,15:34:126:0.119:2	./.	0/1:74,3:35:77:0.039:2	./.
chrX	50350782	rs113799046	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:73,8:30:81:0.099:2	./.	./.	0/1:57,4:33:61:0.066:2	./.	./.	./.	0/1:115,11:32:126:0.087:2	./.	./.	./.
chrX	50370593	rs28362301	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,27:33:27:1.00:2	./.	./.	./.	./.	./.
chrX	50381284	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:32:116:0.034:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	50654057	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,6:32:76:0.079:2	./.	./.	./.	./.	./.	./.
chrX	50654091	rs41308602	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,42:31:91:0.462:2	./.
chrX	50658871	rs114823607	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,43:32:89:0.483:2	./.	./.	./.	./.
chrX	50658999	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:29:97:0.041:2
chrX	50659007	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:32:141:0.028:2	./.	./.
chrX	50659280	rs17003221	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,45:32:74:0.608:2	./.	./.	./.	./.
chrX	51075841	rs2625875	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:129,39:28:168:0.232:2	0/1:76,32:28:108:0.296:2	0/1:24,9:29:33:0.273:2	0/1:94,35:29:129:0.271:2	0/1:145,48:28:193:0.249:2	0/1:125,35:29:160:0.219:2	0/1:136,56:28:192:0.292:2	0/1:141,52:27:193:0.269:2	0/1:115,40:29:155:0.258:2	0/1:129,56:28:186:0.303:2	0/1:59,22:29:81:0.272:2
chrX	51075901	rs2801627	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:99,18:30:117:0.154:2	0/1:59,22:30:81:0.272:2	./.	0/1:75,15:29:91:0.167:2	0/1:72,16:29:88:0.182:2	0/1:94,15:27:109:0.138:2	0/1:66,9:30:75:0.120:2	0/1:94,12:29:106:0.113:2	0/1:78,13:29:91:0.143:2	0/1:79,19:30:98:0.194:2	0/1:45,5:29:50:0.100:2
chrX	51076018	rs12846945	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:47,33:30:80:0.413:2	0/1:41,14:30:55:0.255:2	./.	./.	./.	./.	./.	0/1:50,62:30:112:0.554:2	./.	0/1:43,42:30:85:0.494:2	./.
chrX	51150407	rs116168267	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,77:32:121:0.642:2	./.	./.	./.	./.
chrX	51150441	rs17854399	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:50,47:32:97:0.485:2	0/1:51,31:32:82:0.378:2	./.	./.	./.	./.	./.	0/1:98,65:32:163:0.399:2	./.	0/1:77,61:32:139:0.442:2	./.
chrX	51151589	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,4:31:33:0.121:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	51234577	rs185201069	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,72:30:80:0.900:2	./.	./.	./.	./.	./.	./.	./.
chrX	51488531	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:30:57:0.070:2	./.	./.	./.	./.	./.
chrX	51488555	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,3:34:52:0.058:2	./.
chrX	51488867	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,3:34:62:0.048:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	51637471	rs12837412	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:31,27:28:58:0.466:2	0/1:17,8:30:25:0.320:2	./.	./.	./.	./.	./.	0/1:51,31:29:82:0.378:2	0/1:1,45:30:46:0.978:2	0/1:36,22:29:58:0.379:2	./.
chrX	51644748	rs3199687	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,7:33:13:0.538:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	51644997	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:33:118:0.034:2	./.
chrX	51797106	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,35:30:60:0.583:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	51805444	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:32:173:0.023:2	./.	./.	./.	./.	./.
chrX	51808521	rs200519198	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:105,81:32:186:0.435:2	./.	./.
chrX	51931766	rs200921001	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,93:33:197:0.472:2	./.	./.
chrX	51943208	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,27:30:52:0.519:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	52239185	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,37:31:142:0.261:2	./.	./.	./.	./.	./.	./.
chrX	52239321	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:51,26:29:77:0.338:2	./.	./.	./.	./.	./.	./.	./.
chrX	52239337	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,24:30:69:0.348:2	./.	./.	0/1:69,19:32:88:0.216:2	0/1:79,8:29:87:0.092:2	0/1:27,20:32:47:0.426:2	0/1:55,21:31:76:0.276:2	./.
chrX	52259836	.	G	A	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,5:31:30:0.167:2	./.	0/1:42,4:31:46:0.087:2	0/1:52,12:30:64:0.188:2	0/1:64,9:31:73:0.123:2	0/1:17,10:31:27:0.370:2	0/1:57,12:29:69:0.174:2	./.
chrX	52259852	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,4:29:30:0.133:2	./.	./.	./.	./.	./.	./.	./.
chrX	52259988	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,21:32:118:0.178:2	./.	./.	./.	./.	./.	./.
chrX	52512136	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:72,34:31:106:0.321:2	./.	./.	./.	./.	./.	./.
chrX	52512272	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,14:29:60:0.233:2	./.	./.	./.	./.	./.	./.	./.
chrX	52512288	.	C	T	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,15:30:54:0.278:2	./.	./.	0/1:73,14:31:87:0.161:2	0/1:98,16:31:114:0.140:2	0/1:30,9:30:39:0.231:2	0/1:67,11:32:78:0.141:2	./.
chrX	52532776	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,6:30:32:0.188:2	./.	./.	0/1:62,7:31:69:0.101:2	0/1:107,9:31:116:0.078:2	0/1:20,8:32:28:0.286:2	0/1:60,5:32:65:0.077:2	./.
chrX	52532792	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,8:30:40:0.200:2	./.	./.	./.	./.	./.	./.	./.
chrX	52532928	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,22:31:110:0.200:2	./.	./.	./.	./.	./.	./.
chrX	52545670	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:32,7:32:39:0.179:2	./.	./.	./.	0/1:66,4:29:71:0.057:2	0/1:22,11:30:33:0.333:2	0/1:45,9:32:54:0.167:2	./.
chrX	52545686	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,8:31:43:0.186:2	./.	./.	./.	./.	./.	./.	./.
chrX	52545822	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:75,22:32:97:0.227:2	./.	./.	./.	./.	./.	./.
chrX	52674502	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:133,40:31:173:0.231:2	0/1:171,22:31:193:0.114:2	./.	0/1:168,21:32:189:0.111:2	0/1:173,21:31:194:0.108:2	./.	./.	./.	0/1:149,31:32:180:0.172:2	0/1:176,17:31:193:0.088:2	0/1:155,21:31:176:0.119:2
chrX	52674508	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:34:197:0.020:2	./.	./.	./.
chrX	52674514	rs140796367	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:127,59:31:186:0.317:2	0/1:108,50:33:158:0.316:2	./.	./.	./.	./.	./.	./.	0/1:52,116:32:168:0.690:2	./.	./.
chrX	52674516	rs5986182	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:73,44:31:117:0.376:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	52679410	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:166,6:34:172:0.035:2	./.	./.	./.	0/1:153,5:33:158:0.032:2	./.	./.	./.
chrX	52679429	rs148578012	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:29,33:29:63:0.532:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	52681964	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:182,4:33:186:0.022:2	./.	./.	./.	./.	0/1:185,4:34:189:0.021:2	./.	./.	./.	./.
chrX	52681976	rs3122210	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,29:30:79:0.367:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	52682529	rs371813538	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,5:28:193:0.026:2	./.	./.	./.	./.	./.	./.	./.
chrX	52727928	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:132,32:31:164:0.195:2	0/1:118,30:32:148:0.203:2	0/1:38,16:32:54:0.296:2	0/1:74,73:32:147:0.497:2	./.	0/1:75,72:31:147:0.490:2	0/1:96,92:32:188:0.489:2	0/1:85,107:32:192:0.557:2	0/1:75,94:34:169:0.556:2	0/1:91,73:32:164:0.445:2	./.
chrX	52731638	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:32:177:0.023:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	52786970	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:31:195:0.026:2	./.	./.	./.	./.
chrX	52788631	rs199749187	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:142,42:32:184:0.228:2	0/1:138,56:32:194:0.289:2	0/1:31,8:29:39:0.205:2	0/1:89,80:32:169:0.473:2	./.	0/1:102,91:32:193:0.472:2	0/1:105,88:33:193:0.456:2	0/1:89,93:33:182:0.511:2	0/1:123,69:32:192:0.359:2	0/1:96,88:32:184:0.478:2	./.
chrX	52825546	rs2806838	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,178:30:178:1.00:2	0/1:3,176:30:179:0.983:2	0/1:28,19:29:47:0.404:2	0/1:0,188:30:188:1.00:2	0/1:0,85:29:85:1.00:2	0/1:1,162:29:163:0.994:2	0/1:4,184:30:188:0.979:2	0/1:2,187:30:189:0.989:2	0/1:0,184:31:184:1.00:2	0/1:0,181:30:181:1.00:2	0/1:0,182:29:182:1.00:2
chrX	52825650	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:31:142:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	52844173	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:98,4:32:102:0.039:2	./.	./.	./.	./.	./.	./.
chrX	52844219	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:30:108:0.038:2	./.
chrX	52891645	rs75808475	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:116,67:30:183:0.366:2	0/1:71,35:29:106:0.330:2	0/1:6,9:29:15:0.600:2	0/1:58,38:28:96:0.396:2	0/1:29,12:29:41:0.293:2	0/1:50,30:28:80:0.375:2	0/1:74,28:28:102:0.275:2	0/1:103,45:29:148:0.304:2	0/1:75,49:29:125:0.395:2	0/1:101,68:29:169:0.402:2	0/1:117,47:29:164:0.287:2
chrX	52891653	rs73206488	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:117,66:32:183:0.361:2	0/1:72,33:32:106:0.314:2	0/1:6,9:32:15:0.600:2	0/1:60,39:31:99:0.394:2	0/1:28,12:31:40:0.300:2	0/1:55,30:31:85:0.353:2	0/1:74,30:32:104:0.288:2	0/1:106,46:32:152:0.303:2	0/1:69,51:33:120:0.425:2	0/1:106,64:32:170:0.376:2	0/1:120,48:32:168:0.286:2
chrX	52937027	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,34:32:197:0.173:2	./.	0/1:137,41:32:178:0.230:2	./.
chrX	52937136	.	C	T	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:136,49:31:185:0.265:2	0/1:151,39:32:190:0.205:2	0/1:56,15:31:71:0.211:2	./.	0/1:101,84:31:185:0.454:2	./.	0/1:158,36:32:194:0.186:2	0/1:49,132:32:181:0.729:2	./.	0/1:148,40:30:188:0.213:2	./.
chrX	53105890	rs17850567	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:57,43:31:100:0.430:2	0/1:27,25:32:52:0.481:2	./.	0/1:2,73:31:75:0.973:2	./.	./.	./.	0/1:111,78:31:189:0.413:2	./.	./.	./.
chrX	53105969	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:31:87:0.047:2	./.	./.	./.	./.	./.
chrX	53106865	rs11091720	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:32,35:31:67:0.522:2	0/1:19,19:31:38:0.500:2	./.	0/1:1,35:31:36:0.972:2	./.	./.	./.	0/1:35,28:31:63:0.444:2	./.	./.	./.
chrX	53107941	rs56157110	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,23:32:42:0.548:2	0/1:10,7:32:17:0.412:2	0/1:4,4:32:8:0.500:2	0/1:0,13:31:13:1.00:2	./.	./.	./.	0/1:10,16:31:26:0.615:2	./.	./.	./.
chrX	53108272	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,5:26:119:0.042:2	./.
chrX	53108753	rs189160643	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,23:31:39:0.590:2	./.	./.	./.	./.
chrX	53108788	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,6:33:29:0.207:2	./.	./.	./.	./.	./.	./.	./.
chrX	53109075	rs7060542	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,62:30:112:0.554:2	0/1:30,24:31:54:0.444:2	0/1:8,3:31:11:0.273:2	0/1:1,67:31:68:0.985:2	./.	./.	./.	0/1:71,49:29:120:0.408:2	./.	./.	./.
chrX	53109370	rs12398999	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,39:31:40:0.975:2	./.	./.	./.	0/1:38,39:31:77:0.506:2	./.	./.	./.
chrX	53109649	rs149342262	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,44:32:103:0.427:2	0/1:47,36:32:83:0.434:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	53228289	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,4:31:101:0.040:2	./.	./.	./.	./.	./.	./.
chrX	53246418	rs61751437	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,50:32:135:0.370:2	./.
chrX	53276250	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:121,4:33:125:0.032:2	./.	./.	./.	./.	./.	./.
chrX	53409479	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:107,4:32:111:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	53440235	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,16:31:182:0.088:2	./.	./.	./.	./.
chrX	53457622	rs1264013	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,13:32:19:0.684:2	./.	./.	0/1:1,48:32:49:0.980:2	0/1:66,51:32:117:0.436:2	0/1:65,48:32:113:0.425:2	0/1:0,58:33:58:1.00:2	0/1:0,88:32:88:1.00:2	./.
chrX	53561087	rs477171	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,106:33:194:0.546:2	./.	./.	./.
chrX	53563176	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:34:136:0.029:2	./.	./.
chrX	53563589	rs426298	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,49:31:49:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,14:29:14:1.00:2
chrX	53574759	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:32:69:0.058:2	./.	./.	./.	./.	./.
chrX	53574773	rs374436582	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:64,4:30:68:0.059:2	./.	./.	./.	./.	./.	./.	./.
chrX	53575169	rs41306894	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,84:33:86:0.977:2
chrX	53575931	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,4:33:54:0.074:2	./.	./.
chrX	53576303	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,11:16:64:0.172:2	./.	0/1:101,17:13:118:0.144:2	./.	./.	./.	0/1:44,4:29:48:0.083:2
chrX	53592185	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:28:77:0.052:2	./.
chrX	53596627	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:34:90:0.044:2	./.	./.
chrX	53596718	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:95,18:10:113:0.159:2
chrX	53604009	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,6:33:70:0.086:2	./.	./.
chrX	53610752	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,4:33:98:0.041:2	./.	./.	./.	./.
chrX	53618055	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:32:96:0.042:2	./.
chrX	53641647	rs6638360	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,39:28:39:1.00:2	0/1:0,57:29:57:1.00:2	0/1:38,40:29:78:0.513:2	0/1:2,50:29:52:0.962:2	0/1:0,63:29:63:1.00:2	./.
chrX	53652121	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,5:31:193:0.026:2	./.	./.	./.
chrX	53652838	rs78801842	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:33:3:1.00:2	0/1:0,12:32:12:1.00:2	./.	0/1:0,4:34:4:1.00:2	0/1:0,12:32:12:1.00:2	./.
chrX	53652846	rs74381511	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,18:30:18:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,9:29:9:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,19:29:19:1.00:2	0/1:0,24:28:24:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,18:29:18:1.00:2	0/1:0,6:31:6:1.00:2
chrX	53652852	rs11091285	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,21:32:21:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,9:30:9:1.00:2
chrX	53652898	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:66,4:30:70:0.057:2	./.	./.	./.	./.	./.	./.	./.
chrX	53658558	rs148129382	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,56:33:57:0.982:2
chrX	53964488	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:90,4:31:94:0.043:2	./.	./.	./.	./.	./.	./.
chrX	54014301	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:33:177:0.023:2	./.	./.	./.	./.
chrX	54112185	rs41304786	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,32:30:58:0.552:2	./.	./.	./.
chrX	54185963	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:33:95:0.042:2	./.	./.	./.	./.	./.
chrX	54209387	rs2495783	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,2:30:2:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,2:28:2:1.00:2	./.	0/1:0,4:26:4:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,2:34:2:1.00:2	0/1:0,6:33:6:1.00:2	0/1:0,2:29:2:1.00:2
chrX	54224912	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:27,12:10:39:0.308:2	./.	./.	0/1:110,30:8:142:0.214:2	./.	0/1:87,23:8:110:0.209:2	./.
chrX	54319452	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:21,4:33:25:0.160:2	./.	./.	./.	./.	./.	./.	./.
chrX	54360089	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:35:3:0.667:2	./.	./.	./.	./.	./.	./.	./.
chrX	54472742	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:33:186:0.022:2	./.
chrX	54574677	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:31:93:0.043:2	./.	./.	./.	./.
chrX	54777515	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:58,4:32:62:0.065:2	./.	./.	./.	./.	./.	./.
chrX	54781530	rs17316491	C	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,39:31:39:1.00:2	./.	0/1:1,49:30:51:0.980:2	0/1:37,37:30:74:0.500:2	./.	./.	0/1:34,45:31:79:0.570:2	./.
chrX	54836361	rs1043031	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:27,17:28:45:0.386:2	0/1:20,18:30:38:0.474:2	./.	0/1:1,39:28:40:0.975:2	./.	0/1:0,31:28:31:1.00:2	0/1:0,57:27:57:1.00:2	./.	0/1:0,34:29:34:1.00:2	0/1:16,33:29:49:0.673:2	./.
chrX	54836505	rs1043034	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:10,16:31:26:0.615:2	0/1:6,7:31:13:0.538:2	./.	0/1:0,13:31:13:1.00:2	./.	0/1:0,5:30:5:1.00:2	0/1:0,31:30:31:1.00:2	./.	0/1:2,10:34:12:0.833:2	0/1:7,15:32:22:0.682:2	./.
chrX	54837340	rs1043044	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:45,29:32:74:0.392:2	0/1:30,24:32:54:0.444:2	./.	0/1:0,63:31:63:1.00:2	./.	0/1:0,46:31:46:1.00:2	0/1:0,107:31:107:1.00:2	./.	0/1:0,68:33:68:1.00:2	0/1:42,43:32:85:0.506:2	./.
chrX	54838077	rs2071932	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:67,59:32:127:0.468:2	0/1:39,31:32:70:0.443:2	./.	0/1:2,82:32:84:0.976:2	./.	0/1:0,81:31:81:1.00:2	0/1:1,109:31:110:0.991:2	./.	0/1:0,68:32:68:1.00:2	0/1:72,59:32:131:0.450:2	./.
chrX	54839600	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,5:34:187:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:34:154:0.026:2
chrX	54841737	rs11555927	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,30:31:31:0.968:2	./.	0/1:0,37:32:37:1.00:2	0/1:42,32:31:74:0.432:2	./.	0/1:0,26:33:26:1.00:2	0/1:25,35:32:60:0.583:2	./.
chrX	54949963	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:31:67:0.060:2	./.
chrX	54951464	rs45448595	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,78:31:189:0.413:2	./.	./.	./.
chrX	54955150	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:116,4:32:120:0.033:2	./.	./.
chrX	54978348	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,9:31:158:0.057:2	./.	./.	./.	./.
chrX	55020404	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,7:32:88:0.080:2
chrX	55020414	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:29:89:0.045:2
chrX	55028691	rs61752443	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,62:30:63:0.984:2	./.	./.	./.	./.	./.
chrX	55102550	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,5:31:190:0.026:2	./.	./.	./.
chrX	55103832	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,4:32:86:0.047:2	./.	./.	./.	./.	./.	./.	./.
chrX	55116466	rs1845444	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,181:33:181:1.00:2	0/1:0,124:32:124:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,114:33:114:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,117:32:117:1.00:2	0/1:0,127:33:127:1.00:2	0/1:0,194:32:194:1.00:2	0/1:0,121:33:121:1.00:2	0/1:0,182:32:184:1.00:2	0/1:0,144:32:144:1.00:2
chrX	55116478	rs150926284	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,57:30:58:0.983:2	./.	./.	./.	./.	./.	./.
chrX	55116522	rs369034281	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,9:33:168:0.054:2	./.	./.	./.	./.
chrX	55172630	rs113263757	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,8:30:40:0.200:2	./.	./.	./.	./.	./.
chrX	55172645	rs1047042	C	T,G	.	PASS	AC=1,2;AF=0.111,0.222;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/2:30:44:0.159:2	./.	./.	./.	0/2:33:51:0.061:2	0/1:31:38:0.105:2
chrX	55172687	rs1047037	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,4:33:34:0.118:2
chrX	55185568	rs113840740	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,4:32:43:0.093:2	./.	0/1:83,4:32:87:0.046:2	0/1:50,6:33:56:0.107:2	./.	./.
chrX	55247030	rs5914273	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,110:30:110:1.00:2	0/1:0,66:29:66:1.00:2	0/1:0,17:30:17:1.00:2	0/1:2,79:29:81:0.975:2	0/1:0,90:29:90:1.00:2	0/1:1,105:29:106:0.991:2	0/1:0,164:28:164:1.00:2	0/1:0,189:29:189:1.00:2	0/1:0,86:30:86:1.00:2	0/1:0,126:29:127:1.00:2	0/1:0,50:29:50:1.00:2
chrX	55250474	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:48,4:32:52:0.077:2	./.	./.	./.	./.	./.	./.
chrX	55287031	rs3761560	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:44,63:30:107:0.589:2	0/1:39,27:29:66:0.409:2	./.	./.	0/1:0,47:30:47:1.00:2	./.	./.	0/1:90,79:29:170:0.467:2	./.	./.	0/1:0,88:28:88:1.00:2
chrX	55289774	rs4826381	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,103:32:103:1.00:2	0/1:0,66:32:66:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,64:33:64:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,98:32:98:1.00:2	0/1:0,97:32:97:1.00:2	0/1:1,72:34:73:0.986:2	0/1:3,92:32:95:0.968:2	0/1:0,52:32:52:1.00:2
chrX	55479299	rs11545211	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:28,27:30:55:0.491:2	0/1:9,17:30:26:0.654:2	./.	./.	0/1:0,19:29:19:1.00:2	./.	./.	0/1:29,26:30:55:0.473:2	./.	./.	0/1:0,22:29:22:1.00:2
chrX	55514818	rs3126255	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:37,22:32:59:0.373:2	0/1:24,24:31:48:0.500:2	0/1:0,5:29:5:1.00:2	0/1:0,38:32:38:1.00:2	./.	0/1:0,48:31:48:1.00:2	0/1:3,106:31:109:0.972:2	0/1:69,38:32:107:0.355:2	0/1:0,67:32:67:1.00:2	0/1:1,76:32:77:0.987:2	./.
chrX	55651001	rs2375465	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,123:33:123:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,20:32:20:1.00:2	0/1:1,53:32:54:0.981:2	0/1:0,44:32:44:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,116:32:116:1.00:2	0/1:1,124:32:125:0.992:2	0/1:0,72:33:72:1.00:2	0/1:0,122:32:122:1.00:2	0/1:0,57:31:57:1.00:2
chrX	56591546	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:33:46:0.087:2	./.	./.
chrX	56592475	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:31:150:0.027:2	./.	./.	./.	./.	./.
chrX	56593439	rs41306757	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,32:33:68:0.471:2	./.	./.	./.
chrX	57146927	rs201872206	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:85,72:32:157:0.459:2	0/1:63,55:31:118:0.466:2	0/1:7,6:32:13:0.462:2	0/1:53,49:32:102:0.480:2	0/1:50,49:31:99:0.495:2	0/1:45,67:32:112:0.598:2	0/1:78,67:32:145:0.462:2	0/1:133,39:31:172:0.227:2	0/1:55,41:32:96:0.427:2	0/1:78,72:32:150:0.480:2	0/1:63,51:32:114:0.447:2
chrX	57146931	rs200446826	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:83,70:30:153:0.458:2	0/1:63,55:30:118:0.466:2	0/1:7,6:31:13:0.462:2	0/1:50,47:30:97:0.485:2	0/1:45,48:30:93:0.516:2	0/1:42,66:30:108:0.611:2	0/1:75,67:30:142:0.472:2	0/1:128,37:30:165:0.224:2	0/1:53,39:29:92:0.424:2	0/1:72,67:30:140:0.482:2	0/1:60,44:30:104:0.423:2
chrX	57146945	rs201521097	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:76,67:32:143:0.469:2	0/1:60,52:32:112:0.464:2	0/1:6,5:32:11:0.455:2	0/1:49,47:32:96:0.490:2	0/1:39,39:31:78:0.500:2	0/1:41,51:32:92:0.554:2	0/1:64,65:32:129:0.504:2	0/1:128,36:32:164:0.220:2	0/1:44,44:32:88:0.500:2	0/1:70,49:32:119:0.412:2	0/1:45,37:32:82:0.451:2
chrX	57162885	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,4:32:21:0.190:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	57162895	rs202201318	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:75,65:32:140:0.464:2	0/1:69,49:32:118:0.415:2	0/1:10,8:32:18:0.444:2	0/1:54,39:32:93:0.419:2	0/1:44,40:32:84:0.476:2	0/1:53,70:31:123:0.569:2	0/1:86,63:32:149:0.423:2	0/1:121,55:32:176:0.313:2	0/1:60,44:32:104:0.423:2	0/1:78,65:32:143:0.455:2	0/1:67,37:32:104:0.356:2
chrX	57162899	rs200312689	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:68,59:30:127:0.465:2	0/1:69,46:31:115:0.400:2	0/1:10,8:30:19:0.444:2	0/1:53,36:30:89:0.404:2	0/1:42,36:30:78:0.462:2	0/1:49,68:30:117:0.581:2	0/1:88,56:30:144:0.389:2	0/1:117,52:30:169:0.308:2	0/1:56,42:30:98:0.429:2	0/1:77,65:30:142:0.458:2	0/1:68,33:30:101:0.327:2
chrX	57162913	rs149111204	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:73,61:31:135:0.455:2	0/1:59,44:32:103:0.427:2	0/1:10,7:32:17:0.412:2	0/1:50,32:32:82:0.390:2	0/1:35,31:32:66:0.470:2	0/1:45,62:32:107:0.579:2	0/1:86,53:32:139:0.381:2	0/1:117,47:31:164:0.287:2	0/1:40,34:32:74:0.459:2	0/1:86,60:32:146:0.411:2	0/1:58,28:32:86:0.326:2
chrX	57163061	rs5960908	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,18:29:82:0.220:2	0/1:45,14:30:59:0.237:2	0/1:6,3:34:9:0.333:2	0/1:35,23:32:58:0.397:2	0/1:21,31:31:53:0.596:2	0/1:20,26:31:46:0.565:2	0/1:49,38:31:87:0.437:2	0/1:93,31:31:124:0.250:2	0/1:33,20:33:53:0.377:2	./.	0/1:25,19:32:44:0.432:2
chrX	57163064	rs5960909	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,18:30:82:0.220:2	0/1:47,14:31:61:0.230:2	0/1:5,3:30:8:0.375:2	0/1:34,22:30:56:0.393:2	0/1:22,32:29:54:0.593:2	0/1:21,26:28:47:0.553:2	0/1:51,38:29:89:0.427:2	0/1:94,31:28:125:0.248:2	0/1:33,20:31:53:0.377:2	./.	0/1:24,21:30:45:0.467:2
chrX	57163183	rs56202849	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:145,43:32:188:0.229:2	0/1:100,27:31:127:0.213:2	./.	./.	0/1:45,50:31:95:0.526:2	./.	0/1:145,45:32:190:0.237:2	./.	./.	./.	0/1:44,80:32:124:0.645:2
chrX	57313357	rs111920515	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:48,50:31:98:0.510:2	0/1:38,30:32:68:0.441:2	./.	./.	0/1:1,31:32:32:0.969:2	./.	0/1:43,43:32:86:0.500:2	0/1:41,59:32:100:0.590:2	./.	./.	0/1:1,51:30:52:0.981:2
chrX	57313382	rs146874627	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,49:31:97:0.505:2	0/1:42,30:32:72:0.417:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	57405163	rs4826543	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,122:33:122:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,15:32:15:1.00:2	0/1:0,114:33:114:1.00:2	0/1:0,94:33:94:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,145:33:145:1.00:2	0/1:2,144:33:146:0.986:2	0/1:0,85:33:85:1.00:2	0/1:0,170:33:170:1.00:2	0/1:0,77:33:77:1.00:2
chrX	57475132	rs1367830	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:75,59:33:134:0.440:2	0/1:41,25:32:66:0.379:2	0/1:0,15:32:15:1.00:2	0/1:0,69:32:69:1.00:2	./.	0/1:0,62:32:62:1.00:2	0/1:60,57:33:117:0.487:2	0/1:45,51:33:96:0.531:2	0/1:2,66:34:68:0.971:2	0/1:0,114:33:114:1.00:2	./.
chrX	57619491	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,7:34:193:0.036:2	./.
chrX	57619648	rs1057328	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,139:32:140:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,109:32:109:1.00:2	./.	0/1:0,129:32:130:1.00:2	./.	0/1:0,186:32:186:1.00:2	./.	./.	./.
chrX	57622607	rs1997715	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:74,69:32:143:0.483:2	0/1:38,42:33:80:0.525:2	./.	./.	0/1:0,38:31:38:1.00:2	./.	0/1:50,55:31:106:0.524:2	0/1:86,64:32:150:0.427:2	./.	./.	0/1:1,69:33:70:0.986:2
chrX	57935373	rs374722342	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:142,8:25:151:0.053:2	./.	./.	./.	./.	./.	./.
chrX	57935439	rs1057331	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:188,4:32:192:0.021:2	./.	./.	./.	./.	./.	./.
chrX	57935700	rs199521371	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:164,11:33:175:0.063:2	0/1:136,6:33:142:0.042:2	./.	./.	0/1:129,4:32:133:0.030:2	0/1:167,7:33:174:0.040:2	0/1:182,8:32:191:0.042:2	0/1:177,8:32:185:0.043:2	0/1:122,7:34:129:0.054:2	./.	0/1:130,4:34:134:0.030:2
chrX	62570514	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:33:96:0.042:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	63410608	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:31:142:0.028:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	63445318	rs202019526	A	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:145,12:18:157:0.076:2	./.	./.	./.	0/1:133,21:13:154:0.136:2	0/1:128,20:19:148:0.135:2	0/1:154,19:16:173:0.110:2	0/1:134,24:12:158:0.152:2	0/1:134,15:14:149:0.101:2	0/1:148,15:13:163:0.092:2	0/1:106,14:20:121:0.117:2
chrX	63488524	rs73227152	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,11:31:27:0.407:2	./.	./.	./.	./.
chrX	63488525	rs73227155	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,11:31:27:0.407:2	./.	./.	./.	./.
chrX	63548681	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	64721790	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,3:31:34:0.088:2	./.	./.	./.	./.	./.
chrX	64743497	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,3:35:81:0.037:2	./.	./.
chrX	64949348	rs140370180	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,5:32:87:0.057:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	64959613	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:32:170:0.024:2	./.
chrX	65242332	rs140202992	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,55:33:99:0.556:2	./.	./.	./.
chrX	65244971	rs17315645	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,67:31:70:0.957:2	./.	./.	./.	./.	./.	./.	./.
chrX	65418789	rs17216603	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,53:30:111:0.477:2	./.
chrX	65427040	rs806607	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,73:30:74:0.986:2	0/1:83,61:31:144:0.424:2	0/1:0,52:29:52:1.00:2
chrX	65427124	rs809363	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,50:30:51:0.980:2	0/1:47,34:30:81:0.420:2	0/1:1,48:29:49:0.980:2
chrX	65819592	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:31:122:0.033:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	65819914	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,4:30:95:0.042:2	./.	./.	./.	./.	./.	./.	./.
chrX	65822607	rs1385698	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,124:32:124:1.00:2	0/1:1,97:32:98:0.990:2	0/1:0,32:32:32:1.00:2	0/1:0,74:33:74:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,94:32:94:1.00:2	0/1:0,182:32:183:1.00:2	0/1:0,185:32:185:1.00:2	0/1:0,100:33:100:1.00:2	0/1:2,126:33:128:0.984:2	0/1:0,88:32:89:1.00:2
chrX	65824986	rs1385699	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,97:32:98:0.990:2	0/1:0,103:32:103:1.00:2	0/1:0,18:31:18:1.00:2	0/1:0,119:31:119:1.00:2	0/1:0,117:31:117:1.00:2	0/1:0,104:31:105:1.00:2	0/1:0,159:32:159:1.00:2	0/1:0,172:31:172:1.00:2	0/1:0,109:32:109:1.00:2	0/1:0,139:31:139:1.00:2	0/1:1,80:32:81:0.988:2
chrX	65835841	rs73221529	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,48:33:74:0.649:2	./.	./.	./.	./.
chrX	66765161	rs200185441	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,2:35:5:0.400:2	./.	./.
chrX	66765627	rs6152	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,19:32:36:0.528:2	0/1:12,8:31:20:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,7:28:7:1.00:2
chrX	66766276	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,4:29:15:0.267:2	./.	./.	./.
chrX	66766359	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.
chrX	67652748	rs41303733	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:79,60:32:139:0.432:2	0/1:37,15:32:52:0.288:2	./.	./.	./.	./.	0/1:75,51:32:126:0.405:2	0/1:108,57:31:165:0.345:2	./.	./.	./.
chrX	67932741	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.
chrX	67937275	rs41310627	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,42:31:74:0.568:2	./.	./.	./.	./.
chrX	67937976	rs55962426	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:77,41:32:118:0.347:2	0/1:29,34:32:63:0.540:2	./.	0/1:0,67:32:67:1.00:2	./.	./.	./.	./.	./.	0/1:43,55:32:98:0.561:2	./.
chrX	67938269	rs55927581	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,37:32:103:0.359:2	./.	./.	./.
chrX	67940175	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,13:13:115:0.114:2	0/1:116,19:14:136:0.141:2	./.	0/1:75,9:15:84:0.107:2	./.
chrX	67940201	rs201883068	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:116,7:21:123:0.057:2	./.	./.	0/1:75,11:15:86:0.128:2	0/1:84,10:18:94:0.106:2	0/1:76,9:17:85:0.106:2	0/1:119,25:20:145:0.174:2	0/1:135,27:17:162:0.167:2	./.	0/1:86,13:25:99:0.131:2	0/1:40,7:16:47:0.149:2
chrX	68059593	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:30:123:0.033:2	./.	./.	./.	./.	./.
chrX	68381264	rs11539157	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:31,26:29:57:0.456:2	0/1:37,23:31:60:0.383:2	0/1:5,6:30:11:0.545:2	./.	./.	./.	0/1:70,91:31:161:0.565:2	./.	./.	0/1:1,81:30:82:0.988:2	./.
chrX	68381787	rs5937160	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:29,40:31:69:0.580:2	0/1:29,19:31:48:0.396:2	0/1:2,5:30:7:0.714:2	./.	./.	./.	0/1:44,44:31:88:0.500:2	./.	./.	0/1:1,43:30:44:0.977:2	./.
chrX	68381912	rs3761646	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,27:31:57:0.474:2	./.	./.	./.
chrX	68382836	rs7067170	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:43,23:31:66:0.348:2	0/1:33,21:32:54:0.389:2	./.	./.	./.	./.	0/1:36,25:31:61:0.410:2	./.	./.	0/1:0,53:31:53:1.00:2	./.
chrX	68725640	rs1171942	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,11:32:21:0.524:2	./.	./.	./.	0/1:58,53:32:111:0.477:2	0/1:65,60:31:125:0.480:2	./.	0/1:47,47:31:94:0.500:2	0/1:0,53:31:53:1.00:2
chrX	69243118	rs2274469	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,14:31:14:1.00:2	./.	0/1:39,12:33:51:0.235:2	./.	./.	0/1:57,27:33:84:0.321:2	0/1:3,47:32:50:0.940:2
chrX	69250308	rs2296765	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:1,62:31:63:0.984:2	0/1:0,51:32:51:1.00:2	0/1:11,4:30:15:0.267:2	./.	./.	0/1:0,47:30:47:1.00:2	./.	./.	0/1:0,54:32:54:1.00:2	0/1:50,36:31:86:0.419:2	./.
chrX	69263514	rs61735680	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,167:28:167:1.00:2	./.	./.
chrX	69283986	rs4844103	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chrX	69353938	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:30:55:0.073:2	./.	./.	./.	./.	./.
chrX	69353977	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,4:32:46:0.087:2	./.	./.	./.	./.	./.
chrX	69366556	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:31:198:0.025:2	./.	./.	./.	./.
chrX	69366563	.	G	A	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:168,4:32:172:0.023:2	./.	0/1:143,24:32:167:0.144:2	0/1:168,17:31:185:0.092:2	0/1:165,15:32:180:0.083:2	./.	0/1:186,8:32:194:0.041:2	./.	0/1:173,25:31:199:0.126:2	0/1:175,22:31:197:0.112:2
chrX	69366608	rs61755732	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:153,4:32:157:0.025:2	./.	0/1:143,16:32:159:0.101:2	0/1:128,15:31:143:0.105:2	0/1:137,17:29:154:0.110:2	./.	0/1:185,5:30:190:0.026:2	./.	0/1:162,14:33:176:0.080:2	0/1:160,16:32:176:0.091:2
chrX	69366666	rs186105696	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,38:32:81:0.475:2	./.	./.	./.	./.
chrX	69460026	rs61750915	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,35:31:60:0.583:2	./.
chrX	69478432	rs41310667	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,89:29:172:0.517:2	./.	./.	./.
chrX	69478749	rs3829708	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,5:30:8:0.625:2	./.	./.	./.	./.	0/1:67,33:30:100:0.330:2	./.	./.	./.
chrX	69478775	rs3829709	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,3:31:8:0.375:2	./.	./.	./.	./.	0/1:53,43:31:96:0.448:2	./.	./.	./.
chrX	69478800	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:74,10:20:84:0.119:2	./.	0/1:134,14:15:148:0.095:2	./.	./.	./.	./.
chrX	69478801	rs202027224	C	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:79,10:29:89:0.112:2	./.	./.	0/1:66,4:31:70:0.057:2	0/1:74,15:28:89:0.169:2	0/1:54,5:30:59:0.085:2	0/1:133,24:28:158:0.153:2	0/1:99,7:31:106:0.066:2	0/1:42,5:32:47:0.106:2	0/1:80,16:30:96:0.167:2	0/1:51,11:31:62:0.177:2
chrX	69478942	rs1152187	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:89,76:32:165:0.461:2	0/1:62,37:32:99:0.374:2	0/1:18,14:30:32:0.438:2	./.	./.	./.	0/1:98,69:32:167:0.413:2	0/1:97,78:32:175:0.446:2	./.	./.	./.
chrX	69489530	rs3818862	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,26:31:61:0.426:2	./.	./.	./.
chrX	69510335	rs1199470	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:40,50:32:90:0.556:2	0/1:15,26:32:41:0.634:2	0/1:0,9:33:9:1.00:2	0/1:0,61:32:61:1.00:2	./.	0/1:0,56:32:56:1.00:2	0/1:0,110:32:110:1.00:2	0/1:0,117:32:117:1.00:2	0/1:0,46:34:46:1.00:2	0/1:0,85:33:85:1.00:2	0/1:0,45:33:45:1.00:2
chrX	69521842	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:33:160:0.025:2	./.	./.	./.
chrX	69521891	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,4:32:142:0.028:2	./.	./.	./.
chrX	69550098	rs41305391	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,7:28:16:0.438:2	./.	./.	./.	./.	0/1:93,85:29:178:0.478:2	./.	./.	./.
chrX	69561728	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,5:28:191:0.026:2	0/1:115,4:33:119:0.034:2	./.	./.
chrX	69561737	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:30:195:0.026:2	./.	./.	./.
chrX	69561780	rs1199457	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:55,69:33:124:0.556:2	0/1:49,43:32:92:0.467:2	./.	./.	./.	./.	0/1:68,59:32:127:0.465:2	./.	./.	./.	./.
chrX	69563815	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:34:55:0.073:2	./.	./.
chrX	69573639	rs1199429	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:45,39:32:84:0.464:2	0/1:31,28:31:59:0.475:2	./.	./.	./.	./.	0/1:59,31:31:90:0.344:2	./.	./.	./.	./.
chrX	69625695	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,4:30:75:0.053:2	./.	./.	./.	./.	./.
chrX	69625733	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,4:30:57:0.070:2	./.	./.	./.	./.	./.
chrX	69626838	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:163,7:32:170:0.041:2	./.	./.	./.	./.	./.	./.	./.
chrX	69645230	rs45513993	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:98,66:32:164:0.402:2	0/1:98,79:32:177:0.446:2	./.	./.	0/1:5,180:31:185:0.973:2	./.	./.	./.	./.	0/1:88,69:31:157:0.439:2	./.
chrX	69647169	rs5980939	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:29,31:28:60:0.517:2	0/1:28,17:29:45:0.378:2	./.	./.	0/1:1,46:29:47:0.979:2	./.	./.	./.	./.	0/1:34,46:30:80:0.575:2	./.
chrX	69652762	rs2296542	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:44,47:32:91:0.516:2	0/1:35,33:32:68:0.485:2	0/1:0,9:33:9:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,43:32:43:1.00:2	0/1:29,36:32:65:0.554:2	0/1:0,94:33:94:1.00:2	0/1:0,41:33:41:1.00:2	0/1:0,77:33:77:1.00:2	0/1:0,47:31:47:1.00:2
chrX	69668463	rs2281868	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:33:10:1.00:2	0/1:0,63:33:63:1.00:2	0/1:4,70:32:74:0.946:2	0/1:0,59:32:59:1.00:2	0/1:79,74:32:153:0.484:2	./.	0/1:1,49:32:50:0.980:2	0/1:49,59:32:108:0.546:2	0/1:0,58:32:59:1.00:2
chrX	69674147	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:33:69:0.058:2	./.	./.	./.	./.	./.
chrX	69674163	rs374740363	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,4:30:121:0.033:2	./.	./.	./.
chrX	69774517	rs4844240	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,188:32:188:1.00:2	0/1:0,128:32:128:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,106:31:106:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,86:31:86:1.00:2	0/1:0,142:32:142:1.00:2	0/1:1,181:32:182:0.995:2	0/1:1,164:33:165:0.994:2	0/1:0,181:32:181:1.00:2	0/1:0,162:32:162:1.00:2
chrX	69843878	rs190899222	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,32:33:57:0.561:2	./.	./.	./.	./.
chrX	69890301	rs4844247	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,11:31:28:0.393:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	70145757	rs149447856	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,75:32:150:0.500:2	0/1:54,40:32:94:0.426:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	70146398	rs4360450	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,122:33:122:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,22:32:22:1.00:2	./.	./.	./.	0/1:1,116:32:117:0.991:2	0/1:0,170:32:170:1.00:2	./.	0/1:1,134:33:135:0.993:2	0/1:0,99:32:99:1.00:2
chrX	70146475	rs6525447	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,5:31:21:0.238:2	./.	./.	./.	0/1:68,52:32:120:0.433:2	./.	./.	./.	./.
chrX	70148071	rs140628718	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,43:32:85:0.506:2	./.	./.	./.	./.
chrX	70324157	rs1130009	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,57:31:58:0.983:2	./.	0/1:0,58:31:58:1.00:2	0/1:50,28:31:78:0.359:2	0/1:59,63:31:122:0.516:2	0/1:0,68:32:68:1.00:2	./.	./.
chrX	70328203	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,46:32:46:1.00:2	./.	./.	./.	./.	./.
chrX	70349947	rs5030619	A	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,135:30:136:0.993:2	./.	0/1:1,179:30:181:0.994:2	0/1:112,81:30:193:0.420:2	0/1:107,81:31:188:0.431:2	0/1:2,148:31:150:0.987:2	./.	./.
chrX	70352008	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,11:33:197:0.056:2	./.	./.	./.	./.
chrX	70464693	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,4:32:182:0.022:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	70511799	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,8:31:128:0.063:2	./.
chrX	70514131	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:52,3:33:55:0.055:2	./.	./.	0/1:43,4:33:47:0.085:2	./.	./.	./.	./.	./.	./.	./.
chrX	70514158	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,6:30:69:0.087:2	./.	./.	./.	0/1:156,4:31:160:0.025:2	./.	./.	./.
chrX	70514332	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,3:32:43:0.070:2
chrX	70518613	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,12:14:112:0.107:2	./.	0/1:54,10:13:64:0.156:2	./.
chrX	70518630	rs201908662	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,9:14:61:0.148:2	./.
chrX	70519856	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:31:52:0.077:2	./.	./.
chrX	70587973	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:130,6:31:136:0.044:2	./.	./.	0/1:150,4:32:155:0.026:2	./.	./.	./.	./.
chrX	70587978	rs146513597	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:129,6:31:135:0.044:2	./.	./.	0/1:150,4:32:154:0.026:2	./.	./.	./.	./.
chrX	70588012	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,6:29:102:0.059:2	./.	./.	0/1:114,4:30:118:0.034:2	./.	./.	./.	./.
chrX	70597011	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,3:31:33:0.091:2	./.	./.	./.	./.	./.	./.	./.
chrX	70597469	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,5:26:120:0.042:2
chrX	70597539	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:32:103:0.039:2
chrX	70597646	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:33:90:0.044:2	./.
chrX	70598098	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:50,5:28:55:0.091:2	./.	./.	./.	./.	./.	0/1:100,4:32:104:0.038:2
chrX	70598136	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:192,5:33:197:0.025:2	0/1:131,4:33:135:0.030:2	./.	./.	0/1:96,6:32:102:0.059:2	./.	./.	./.	./.	./.	0/1:147,5:34:152:0.033:2
chrX	70598300	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,3:35:70:0.043:2	./.	./.
chrX	70598696	rs373703142	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:189,6:32:196:0.031:2	./.	./.	./.	./.	./.	./.
chrX	70601663	rs144087024	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:134,5:31:139:0.036:2	./.	./.	./.	0/1:69,5:31:74:0.068:2	0/1:69,4:32:74:0.055:2	0/1:170,4:34:174:0.023:2	./.	./.	./.	./.
chrX	70601736	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,4:33:53:0.075:2	./.	./.	./.	./.
chrX	70602856	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:55,4:31:59:0.068:2	./.	./.	./.	./.	./.	./.	./.
chrX	70602865	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,4:31:60:0.067:2	./.	./.	./.	./.	./.	./.	./.
chrX	70602904	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,4:31:35:0.114:2	./.	./.	./.	./.	./.
chrX	70602954	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,5:34:47:0.106:2	./.	./.
chrX	70602972	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,5:32:44:0.114:2	./.	./.
chrX	70608657	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:32:164:0.025:2	./.	./.	./.	./.	./.
chrX	70609467	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,6:30:95:0.063:2	./.	./.	./.	0/1:131,5:31:136:0.037:2	./.
chrX	70612481	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,8:32:154:0.052:2	./.	./.	./.
chrX	70612511	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,6:32:80:0.075:2	./.	./.	0/1:90,4:32:94:0.043:2	0/1:128,8:31:136:0.059:2	./.	./.	./.
chrX	70612550	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:56,4:30:60:0.067:2	./.	./.	./.	./.	./.	./.	./.
chrX	70612785	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,4:32:179:0.022:2	./.
chrX	70618467	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:33:141:0.028:2
chrX	70621410	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:114,5:30:119:0.042:2	./.	./.	./.	./.	./.	./.
chrX	70621454	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,5:33:110:0.045:2	./.	./.	./.	./.	./.	./.
chrX	70627477	rs7050748	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:31:176:0.023:2	./.	./.
chrX	70627913	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,5:32:134:0.037:2	./.	./.	./.	./.	./.	./.
chrX	70627919	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:118,4:32:122:0.033:2	./.	./.	./.	./.	./.	./.
chrX	70627929	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,5:32:101:0.050:2	./.	./.	./.	./.	./.	./.
chrX	70627985	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,4:31:56:0.071:2	./.	0/1:75,8:31:83:0.096:2	./.	./.	./.	./.
chrX	70627991	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:52,4:29:56:0.071:2	./.	0/1:70,8:29:78:0.103:2	./.	./.	./.	./.
chrX	70642973	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:30:69:0.058:2	./.	./.	./.	./.	./.
chrX	70643035	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,4:30:97:0.041:2	./.	./.	./.	./.	./.	./.
chrX	70644039	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,7:30:146:0.048:2	./.	./.	./.	./.
chrX	70644045	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,7:31:143:0.049:2	./.	./.	./.	./.
chrX	70644066	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:127,8:32:135:0.059:2	./.	./.	./.	./.
chrX	70680518	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,8:30:153:0.052:2	0/1:79,5:31:84:0.060:2
chrX	70680544	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,8:32:182:0.044:2	./.
chrX	70680545	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,8:31:183:0.044:2	./.
chrX	70680572	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,6:32:163:0.037:2	./.
chrX	70680575	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,6:27:167:0.036:2	./.
chrX	70683758	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,4:32:162:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	70784548	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,4:33:87:0.046:2	./.	./.	./.	./.	./.
chrX	70812447	rs201125431	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,13:8:40:0.342:2	0/1:23,11:10:34:0.324:2	./.	./.	0/1:23,9:12:32:0.281:2
chrX	70814656	rs201934890	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:19,13:13:33:0.406:2	./.	./.	./.	0/1:26,21:9:47:0.447:2	./.	0/1:20,17:9:37:0.459:2	0/1:24,17:11:41:0.415:2	./.	0/1:27,13:9:40:0.325:2	0/1:32,10:20:42:0.238:2
chrX	70823595	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:31:159:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	70823604	rs139110831	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,6:30:150:0.040:2	0/1:95,8:22:103:0.078:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	70823826	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:31:149:0.027:2	0/1:69,5:28:74:0.068:2
chrX	70823950	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,3:32:37:0.081:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	70823980	rs199853865	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,4:32:67:0.061:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	70828934	rs143483517	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,54:32:127:0.425:2	0/1:50,31:32:81:0.383:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	70836938	rs199583668	A	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:37,8:24:45:0.178:2	./.	./.	0/1:27,12:14:39:0.308:2	./.	./.	./.	0/1:76,12:21:89:0.136:2	./.	./.	./.
chrX	70937004	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,57:30:139:0.413:2	0/1:42,31:31:73:0.425:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	70937090	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,49:29:50:0.980:2	0/1:0,26:28:26:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,23:29:23:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,33:28:33:1.00:2	0/1:0,45:30:45:1.00:2	0/1:0,36:31:36:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,22:29:22:1.00:2
chrX	70937157	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,17:32:38:0.447:2	0/1:20,14:31:34:0.412:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	70937574	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,67:31:181:0.370:2	0/1:73,46:32:119:0.387:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	70937919	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,4:26:8:0.500:2	./.	./.	./.	./.	./.	./.
chrX	70983356	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:6,3:30:9:0.333:2	./.	./.	./.	./.	./.	./.
chrX	70983701	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,54:31:156:0.346:2	0/1:89,45:32:135:0.336:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	70984118	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,22:32:44:0.512:2	0/1:20,4:25:24:0.167:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	70984185	.	T	C	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:30:63:1.00:2	0/1:0,29:30:29:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,58:30:58:1.00:2	0/1:0,24:29:24:1.00:2	0/1:0,39:30:39:1.00:2	0/1:0,28:30:28:1.00:2
chrX	70984271	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,60:31:140:0.432:2	0/1:43,33:31:76:0.434:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	71349753	rs12397326	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:26,26:29:52:0.500:2	0/1:14,25:31:39:0.641:2	0/1:0,11:31:11:1.00:2	0/1:0,40:30:40:1.00:2	0/1:1,32:29:33:0.970:2	0/1:0,31:28:31:1.00:2	0/1:34,27:29:61:0.443:2	0/1:0,64:29:64:1.00:2	0/1:0,46:30:46:1.00:2	0/1:24,26:27:50:0.520:2	0/1:2,56:28:58:0.966:2
chrX	71349774	rs12393722	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,43:31:77:0.558:2	0/1:25,34:31:59:0.576:2	0/1:0,18:33:18:1.00:2	0/1:0,50:32:50:1.00:2	0/1:1,44:31:45:0.978:2	0/1:0,45:31:45:1.00:2	0/1:51,41:32:92:0.446:2	0/1:2,101:31:103:0.981:2	0/1:0,54:32:54:1.00:2	0/1:48,36:32:84:0.429:2	0/1:1,71:31:72:0.986:2
chrX	71350133	rs6624595	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,77:30:162:0.475:2	./.	./.	0/1:79,73:30:152:0.480:2	./.
chrX	71351443	rs62614085	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:13,17:32:30:0.567:2	0/1:13,8:28:21:0.381:2	0/1:0,6:32:6:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,12:32:12:1.00:2	0/1:0,21:32:21:1.00:2	0/1:16,17:32:33:0.515:2	0/1:1,38:31:39:0.974:2	0/1:2,8:30:10:0.800:2	0/1:21,16:32:37:0.432:2	0/1:0,24:32:24:1.00:2
chrX	71360204	rs148426364	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,40:29:42:0.952:2	./.	./.	./.	./.	./.	./.	./.
chrX	71360865	rs7392389	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:18,22:30:40:0.550:2	0/1:9,15:32:24:0.625:2	0/1:0,5:31:5:1.00:2	0/1:0,26:31:26:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,26:30:26:1.00:2	0/1:27,21:31:48:0.438:2	0/1:0,46:31:46:1.00:2	0/1:0,36:32:36:1.00:2	0/1:22,8:32:30:0.267:2	0/1:0,22:31:22:1.00:2
chrX	71361089	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,69:32:146:0.476:2	./.
chrX	71363415	rs6624597	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,93:31:93:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,16:29:16:1.00:2	0/1:0,60:29:60:1.00:2	0/1:0,34:29:34:1.00:2	0/1:0,56:30:56:1.00:2	0/1:0,68:29:68:1.00:2	0/1:1,144:30:145:0.993:2	0/1:0,73:30:73:1.00:2	0/1:0,113:31:113:1.00:2	0/1:0,62:30:62:1.00:2
chrX	71379702	rs7884806	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,84:32:86:0.977:2	0/1:0,52:31:52:1.00:2	0/1:0,12:33:12:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,71:31:71:1.00:2	0/1:0,77:31:77:1.00:2	0/1:78,66:32:144:0.458:2	0/1:2,159:32:161:0.988:2	0/1:0,81:33:81:1.00:2	0/1:54,48:32:102:0.471:2	0/1:1,56:31:58:0.982:2
chrX	71379853	rs7880917	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,162:32:164:0.988:2	0/1:0,113:32:113:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,93:33:93:1.00:2	0/1:1,107:32:108:0.991:2	0/1:0,111:32:111:1.00:2	0/1:103,86:32:189:0.455:2	0/1:0,188:33:188:1.00:2	0/1:2,121:33:123:0.984:2	0/1:95,91:33:187:0.489:2	0/1:1,119:33:120:0.992:2
chrX	71379881	rs6624600	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,86:32:167:0.515:2	./.	./.	0/1:91,84:32:175:0.480:2	./.
chrX	71401607	rs6525589	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,136:31:137:0.993:2	0/1:0,50:32:50:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,58:30:58:1.00:2	0/1:0,89:30:89:1.00:2	0/1:0,124:31:124:1.00:2	0/1:0,136:31:136:1.00:2	0/1:0,94:33:94:1.00:2	0/1:1,115:31:116:0.991:2	0/1:1,95:32:97:0.990:2
chrX	71401614	rs7058353	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,142:31:143:0.993:2	0/1:0,56:32:56:1.00:2	0/1:0,14:30:14:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,87:30:87:1.00:2	0/1:0,124:31:124:1.00:2	0/1:0,142:31:142:1.00:2	0/1:0,94:32:94:1.00:2	0/1:1,116:31:118:0.991:2	0/1:1,97:32:98:0.990:2
chrX	71406301	rs6525591	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,64:33:152:0.421:2	./.	./.	0/1:84,90:32:174:0.517:2	./.
chrX	71406336	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:33:104:0.038:2	./.	./.
chrX	71406337	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:31:105:0.038:2	./.	./.
chrX	71406377	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:33:102:0.040:2	./.	./.
chrX	71416652	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,4:32:151:0.026:2
chrX	71416722	rs144390339	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:31:152:0.026:2
chrX	71425235	rs142136151	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,30:31:76:0.395:2	./.	./.	./.	./.
chrX	71425471	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,4:32:67:0.060:2	./.	./.	./.	./.	./.	./.	./.
chrX	71493691	rs7580	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,126:32:127:0.992:2	0/1:0,83:32:83:1.00:2	0/1:11,10:31:21:0.476:2	0/1:0,107:32:107:1.00:2	./.	0/1:0,82:31:82:1.00:2	0/1:86,70:31:156:0.449:2	0/1:0,159:31:159:1.00:2	0/1:1,79:32:81:0.988:2	0/1:0,143:32:144:1.00:2	0/1:0,94:32:94:1.00:2
chrX	71494980	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:57,6:30:63:0.095:2	./.	./.	./.	./.	./.	./.
chrX	71494994	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,4:31:47:0.085:2	./.	./.	./.	./.	./.	./.
chrX	71521867	rs3012627	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,66:31:66:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,4:33:4:1.00:2	0/1:0,44:32:44:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,38:32:38:1.00:2	0/1:49,33:32:82:0.402:2	0/1:0,82:32:82:1.00:2	0/1:0,41:33:41:1.00:2	0/1:0,86:32:86:1.00:2	0/1:0,43:31:43:1.00:2
chrX	71549512	rs660392	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:33:74:1.00:2	0/1:0,54:33:54:1.00:2	0/1:9,7:33:16:0.438:2	0/1:0,66:33:66:1.00:2	./.	0/1:0,70:33:70:1.00:2	0/1:1,85:33:86:0.988:2	0/1:0,127:33:127:1.00:2	./.	0/1:0,74:33:74:1.00:2	0/1:0,55:33:55:1.00:2
chrX	71687881	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,4:32:81:0.049:2	./.
chrX	71791912	rs11093377	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:103,66:32:169:0.391:2	0/1:50,51:32:101:0.505:2	./.	./.	0/1:148,4:32:152:0.026:2	./.	./.	./.	./.	./.	./.
chrX	71800935	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,15:13:129:0.116:2	./.	./.	./.
chrX	71801001	rs201573707	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,46:27:96:0.479:2	./.
chrX	71819691	rs7054230	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,72:33:159:0.453:2	0/1:60,30:31:90:0.333:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	71895982	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,6:29:51:0.118:2	./.
chrX	71933724	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:30:45:0.089:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	71933736	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:38,6:31:44:0.136:2	0/1:16,4:33:20:0.200:2	./.	0/1:25,6:30:31:0.194:2	0/1:15,5:32:20:0.250:2	0/1:11,5:31:16:0.313:2	0/1:24,13:30:37:0.351:2	0/1:30,4:30:34:0.118:2	0/1:23,7:30:30:0.233:2	0/1:31,3:32:34:0.088:2	0/1:15,7:29:22:0.318:2
chrX	72065722	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,21:29:43:0.488:2	./.	./.	./.	./.	0/1:146,46:29:194:0.240:2	./.	./.	./.
chrX	72094776	rs200698413	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,20:30:43:0.465:2	./.	./.	./.	./.	0/1:149,37:29:186:0.199:2	./.	./.	./.
chrX	72158656	.	C	T	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:95,13:32:108:0.120:2	0/1:72,7:32:79:0.089:2	./.	0/1:60,12:32:72:0.167:2	./.	0/1:64,6:32:70:0.086:2	0/1:120,9:33:129:0.070:2	0/1:109,7:33:116:0.060:2	0/1:69,12:34:81:0.148:2	0/1:81,21:33:102:0.206:2	./.
chrX	72224733	rs141917822	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:2,5:32:7:0.714:2	0/1:0,3:31:3:1.00:2	./.	./.	./.	./.	0/1:4,9:29:13:0.692:2	./.	./.	./.	0/1:5,6:31:12:0.545:2
chrX	72224741	rs376528143	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,16:33:84:0.190:2	./.
chrX	72224808	rs144572256	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,192:31:192:1.00:2	0/1:0,199:31:199:1.00:2	./.	0/1:100,95:31:195:0.487:2	0/1:6,190:31:196:0.969:2	0/1:2,197:31:199:0.990:2	0/1:9,186:31:196:0.954:2	0/1:112,83:31:195:0.426:2	0/1:6,192:32:198:0.970:2	0/1:160,38:31:198:0.192:2	0/1:1,195:32:196:0.995:2
chrX	72433371	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:31:72:0.056:2	./.	./.	./.
chrX	72804318	rs148912894	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,56:33:123:0.455:2	./.
chrX	73405871	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:22,4:30:26:0.154:2	./.	./.	./.	./.	./.	./.
chrX	73406515	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:64,4:33:68:0.059:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	73524778	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,65:32:128:0.508:2	./.	./.	./.	./.
chrX	73641265	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,5:23:56:0.089:2	./.	./.	./.
chrX	73641569	rs6647476	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.
chrX	73745726	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:32:136:0.029:2	./.	./.	./.
chrX	73811648	rs200629905	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,4:29:47:0.085:2	./.	./.	0/1:106,4:30:110:0.036:2	./.	./.	./.
chrX	73811695	rs374955178	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,4:35:40:0.100:2	./.	./.	0/1:89,4:34:93:0.043:2	./.	./.	./.
chrX	73811755	rs7883332	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,3:30:7:0.429:2	./.	./.	./.	0/1:27,28:32:55:0.509:2	./.	./.	./.	./.
chrX	73812717	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:33:159:0.025:2
chrX	73812750	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:31:133:0.030:2
chrX	74494470	rs4892396	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:32:64:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,59:31:59:1.00:2	0/1:1,87:32:88:0.989:2	0/1:0,76:32:76:1.00:2	0/1:0,43:33:44:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,33:32:33:1.00:2
chrX	74513354	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,4:32:90:0.045:2	./.	./.	./.
chrX	75395326	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:33:49:0.082:2	./.
chrX	75651096	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,4:28:62:0.065:2
chrX	76764079	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,79:30:139:0.568:2	0/1:56,44:30:100:0.440:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	76937963	rs3088074	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:55,51:32:106:0.481:2	0/1:38,32:32:70:0.457:2	0/1:8,3:32:11:0.273:2	./.	0/1:0,37:32:37:1.00:2	./.	./.	./.	./.	0/1:63,51:32:114:0.447:2	./.
chrX	76952085	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:34:132:0.030:2	./.	./.	./.	./.
chrX	77224879	rs62621209	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,9:30:37:0.243:2	./.	./.	0/1:14,9:30:23:0.391:2	./.
chrX	77225093	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:149,6:28:155:0.039:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	77243944	rs61747968	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,49:31:54:0.907:2	./.	./.
chrX	77268502	rs2227291	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:95,91:33:186:0.489:2	0/1:69,56:32:125:0.448:2	0/1:13,14:32:27:0.519:2	./.	0/1:1,107:32:108:0.991:2	./.	./.	./.	./.	0/1:102,94:33:196:0.480:2	./.
chrX	77284924	rs369055537	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,19:33:19:1.00:2
chrX	77298857	rs4826245	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,75:32:75:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,5:32:5:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,23:29:23:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,27:33:27:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,42:32:42:1.00:2
chrX	77369596	rs200351737	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:112,6:29:118:0.051:2	./.	./.	0/1:135,4:32:139:0.029:2	./.	./.	0/1:171,7:31:178:0.039:2	./.	./.	./.
chrX	77393306	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,6:31:156:0.038:2	./.	./.
chrX	77528317	rs320995	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:31:80:1.00:2	0/1:0,47:31:47:1.00:2	0/1:10,6:31:16:0.375:2	0/1:1,37:31:38:0.974:2	0/1:0,18:29:18:1.00:2	0/1:0,40:30:40:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,78:30:78:1.00:2	./.	0/1:50,25:31:75:0.333:2	0/1:0,56:32:56:1.00:2
chrX	77912782	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:71,4:31:75:0.053:2	./.	./.	./.	./.	./.	./.
chrX	77912795	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,3:31:33:0.091:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	77913569	rs4077512	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,23:29:23:1.00:2	./.	./.	./.	./.	./.	0/1:2,27:31:29:0.931:2	0/1:0,20:31:20:1.00:2
chrX	78011737	rs1140040	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,65:33:65:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,84:32:84:1.00:2	./.	0/1:0,75:32:75:1.00:2	0/1:2,53:33:55:0.964:2
chrX	78012579	rs5959187	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,26:29:50:0.520:2	./.	./.	./.
chrX	78426988	rs3827440	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,186:32:186:1.00:2	0/1:0,181:31:181:1.00:2	0/1:0,33:32:33:1.00:2	./.	0/1:0,144:31:144:1.00:2	0/1:8,165:32:173:0.954:2	0/1:4,183:31:187:0.979:2	0/1:0,192:32:192:1.00:2	./.	./.	./.
chrX	78618948	rs35056863	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,56:31:122:0.459:2	./.	./.	./.
chrX	79281202	rs34244923	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,84:31:187:0.449:2	./.	./.	./.
chrX	79698593	rs1113265	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,68:32:68:1.00:2	0/1:0,34:32:34:1.00:2	0/1:3,3:32:7:0.500:2	0/1:0,34:32:34:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,38:32:38:1.00:2	0/1:22,19:32:41:0.463:2	0/1:1,42:32:43:0.977:2	0/1:0,29:33:29:1.00:2	0/1:17,14:33:31:0.452:2	./.
chrX	79699998	rs73223491	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,56:32:105:0.533:2	./.	./.	./.	0/1:0,67:31:67:1.00:2
chrX	79700121	rs4826179	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,4:32:9:0.444:2	./.	./.	./.	./.	./.	./.	0/1:39,36:31:75:0.480:2	./.
chrX	79932417	rs140852252	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,78:29:78:1.00:2	./.	./.	./.	./.	./.
chrX	79943569	rs3122407	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,175:33:175:1.00:2	0/1:0,152:32:152:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,138:33:138:1.00:2	0/1:0,80:33:80:1.00:2	0/1:0,157:32:157:1.00:2	0/1:0,186:33:186:1.00:2	0/1:0,181:33:181:1.00:2	0/1:0,182:33:182:1.00:2	0/1:1,181:33:182:0.995:2	0/1:0,147:33:147:1.00:2
chrX	79962976	rs148875743	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,91:31:92:1.00:2	./.	./.	./.	./.	./.
chrX	79964982	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:101,4:31:105:0.038:2	./.	./.	./.	./.	./.	./.	./.
chrX	79988940	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:33:191:0.021:2	./.	./.	./.
chrX	79989018	rs4240018	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,30:32:77:0.390:2	./.	./.	0/1:61,46:32:107:0.430:2	0/1:0,73:32:73:1.00:2
chrX	82763977	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:187,4:32:191:0.021:2	./.	./.	./.	./.	./.	./.	./.
chrX	82764040	rs5921978	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,146:33:146:1.00:2	0/1:0,126:32:126:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,135:33:135:1.00:2	0/1:0,105:31:105:1.00:2	0/1:1,147:31:148:0.993:2	0/1:0,160:32:160:1.00:2	0/1:0,176:32:176:1.00:2	0/1:0,132:33:132:1.00:2	0/1:0,180:32:180:1.00:2	0/1:0,110:32:110:1.00:2
chrX	82764042	rs113043342	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,146:32:146:1.00:2	0/1:0,126:32:126:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,134:32:134:1.00:2	0/1:0,105:31:105:1.00:2	0/1:1,148:31:149:0.993:2	0/1:0,160:32:160:1.00:2	0/1:0,176:32:176:1.00:2	0/1:0,131:32:131:1.00:2	0/1:1,175:31:178:0.994:2	0/1:0,109:31:109:1.00:2
chrX	83129027	rs144524564	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,27:31:57:0.474:2	./.	./.	./.	./.
chrX	83360816	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:32:123:0.033:2	./.	./.	./.	./.	./.
chrX	83591836	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:33:51:0.078:2	./.	./.	./.	./.
chrX	83591866	rs5922966	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,25:32:25:1.00:2	./.	./.
chrX	83723541	rs35161124	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:97,84:33:181:0.464:2	0/1:43,54:33:97:0.557:2	./.	./.	./.	0/1:0,100:32:100:1.00:2	0/1:75,99:33:174:0.569:2	0/1:82,117:33:199:0.588:2	./.	0/1:76,93:33:169:0.550:2	./.
chrX	83723601	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:31:157:0.025:2	./.	./.	./.	./.	./.
chrX	83730335	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:32:115:0.035:2	./.	./.
chrX	84322180	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:76,6:31:82:0.073:2	./.	0/1:83,9:30:92:0.098:2	./.	./.	./.	./.	./.
chrX	84322209	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:91,4:32:95:0.042:2	./.	0/1:85,9:29:94:0.096:2	./.	./.	./.	./.	./.
chrX	84329360	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:32:156:0.026:2	./.	./.	./.	./.
chrX	84342601	rs183377356	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,4:34:154:0.026:2	./.	./.	./.	./.	./.
chrX	84349940	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:35:156:0.026:2	./.
chrX	84350010	rs4828326	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,53:32:99:0.535:2	0/1:35,27:32:62:0.435:2	0/1:4,3:31:7:0.429:2	0/1:2,37:33:39:0.949:2	0/1:0,31:32:31:1.00:2	0/1:0,56:31:56:1.00:2	0/1:2,64:32:66:0.970:2	0/1:48,57:32:105:0.543:2	0/1:1,63:33:64:0.984:2	0/1:60,39:32:99:0.394:2	0/1:0,74:33:74:1.00:2
chrX	84358864	rs5922146	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:107,88:32:195:0.451:2	0/1:95,80:32:175:0.457:2	0/1:22,20:31:42:0.476:2	0/1:2,169:31:171:0.988:2	0/1:2,150:31:152:0.987:2	0/1:0,166:31:166:1.00:2	0/1:0,192:31:192:1.00:2	0/1:107,84:31:191:0.440:2	0/1:0,194:32:194:1.00:2	0/1:107,84:31:191:0.440:2	0/1:0,190:32:190:1.00:2
chrX	84362698	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:183,4:34:187:0.021:2	./.	./.	./.	./.	./.	./.	./.
chrX	84362715	.	G	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:187,4:33:191:0.021:2	./.	0/1:189,5:32:194:0.026:2	./.	./.	./.	./.	./.	./.	./.
chrX	84362764	rs150924046	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,5:30:189:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	84363016	rs111389700	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:190,6:30:196:0.031:2	./.	./.	./.	./.	./.	./.	./.	0/1:186,9:32:195:0.046:2	./.	./.
chrX	84363031	rs145801638	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:190,4:32:195:0.021:2	./.	./.	./.	./.	./.	./.	./.	0/1:186,10:32:196:0.051:2	./.	./.
chrX	84363033	rs141720324	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,10:28:197:0.051:2	./.	./.
chrX	84363140	rs10126146	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:97,91:30:189:0.484:2	0/1:105,72:28:179:0.407:2	0/1:61,45:29:106:0.425:2	0/1:1,176:29:177:0.994:2	0/1:0,161:28:161:1.00:2	0/1:0,173:29:174:1.00:2	0/1:2,186:29:189:0.989:2	0/1:98,95:29:194:0.492:2	0/1:0,186:30:186:1.00:2	0/1:104,82:28:188:0.441:2	./.
chrX	84363523	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,90:30:194:0.464:2	./.	./.	./.	./.
chrX	84363742	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:32:196:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	84363759	rs183676756	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:32:196:0.020:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	84363866	.	C	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:187,8:31:196:0.041:2	./.	0/1:188,6:31:195:0.031:2	./.	0/1:188,6:29:194:0.031:2	./.	./.	0/1:185,5:28:190:0.026:2	./.	./.
chrX	84510281	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,22:9:122:0.180:2	./.	0/1:80,10:16:90:0.111:2	./.
chrX	84534383	rs2227090	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,61:32:62:0.984:2	0/1:0,29:32:29:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,30:33:30:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,50:31:50:1.00:2	0/1:2,42:32:44:0.955:2	0/1:0,64:32:64:1.00:2	0/1:1,48:32:49:0.980:2
chrX	84563135	rs363774	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,85:33:86:0.988:2	0/1:0,42:32:42:1.00:2	0/1:3,7:31:10:0.700:2	0/1:2,50:31:52:0.962:2	0/1:0,34:31:34:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,115:32:115:1.00:2	0/1:0,55:32:55:1.00:2	0/1:66,32:31:98:0.327:2	0/1:0,77:32:77:1.00:2
chrX	85213927	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:32:115:0.035:2	./.	./.	./.	./.
chrX	85219021	rs10217950	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,72:27:74:0.973:2	0/1:0,34:26:34:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,47:28:47:1.00:2	./.	0/1:1,49:28:50:0.980:2	./.	0/1:50,38:28:88:0.432:2	./.	0/1:41,34:28:75:0.453:2	./.
chrX	85233820	rs145707160	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,65:33:132:0.492:2	0/1:37,30:32:67:0.448:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	85969564	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,6:33:198:0.030:2	./.	./.	./.	./.	./.
chrX	86868922	.	T	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:142,5:29:147:0.034:2	0/1:132,6:28:138:0.043:2	./.	0/1:168,9:29:177:0.051:2	0/1:170,8:28:178:0.045:2	./.	./.	./.
chrX	86877348	rs2273050	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,162:31:165:0.982:2	./.	./.	0/1:100,69:31:169:0.408:2	0/1:109,89:31:198:0.449:2	./.	./.	0/1:1,152:31:153:0.993:2
chrX	86887244	rs222084	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:64,72:32:136:0.529:2	0/1:36,36:32:72:0.500:2	0/1:6,12:31:18:0.667:2	0/1:4,61:32:65:0.938:2	0/1:0,32:32:32:1.00:2	./.	0/1:65,33:32:98:0.337:2	0/1:3,118:31:121:0.975:2	0/1:0,67:33:67:1.00:2	0/1:66,53:32:119:0.445:2	0/1:2,73:32:75:0.973:2
chrX	86919860	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,5:33:70:0.071:2
chrX	88008423	rs5940915	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:32:46:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,26:33:26:1.00:2	0/1:19,19:31:38:0.500:2	0/1:0,53:32:53:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,38:33:38:1.00:2	0/1:0,28:33:28:1.00:2
chrX	88008807	rs5984611	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:34,12:32:46:0.261:2	0/1:12,28:31:40:0.700:2	0/1:1,3:31:4:0.750:2	0/1:1,20:32:21:0.952:2	./.	./.	./.	./.	./.	./.	./.
chrX	88009170	rs41307393	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,17:32:52:0.327:2	./.	./.	./.	./.
chrX	88009322	rs5984613	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:32:45:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,21:31:21:1.00:2	0/1:15,15:32:30:0.500:2	0/1:0,40:31:40:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,29:32:29:1.00:2
chrX	88009700	rs12556970	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:58,37:33:95:0.389:2	0/1:19,28:32:47:0.596:2	0/1:10,5:31:15:0.333:2	./.	0/1:0,33:31:33:1.00:2	./.	0/1:36,27:32:64:0.429:2	0/1:0,65:32:65:1.00:2	0/1:1,41:32:42:0.976:2	./.	0/1:0,56:31:56:1.00:2
chrX	89177109	rs11575111	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,26:32:49:0.531:2	./.
chrX	89177673	rs2290380	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,173:30:173:1.00:2	0/1:0,111:31:111:1.00:2	0/1:16,6:29:22:0.273:2	0/1:2,92:29:94:0.979:2	0/1:0,53:29:53:1.00:2	0/1:0,77:30:77:1.00:2	0/1:0,122:30:122:1.00:2	0/1:103,94:30:197:0.477:2	./.	0/1:0,170:30:170:1.00:2	0/1:0,117:30:118:1.00:2
chrX	90693458	rs4609354	A	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:45,52:32:97:0.536:2	0/1:32,38:31:70:0.543:2	0/1:0,15:30:15:1.00:2	./.	./.	./.	0/1:33,37:32:70:0.529:2	0/1:44,37:31:81:0.457:2	./.	0/1:0,67:32:67:1.00:2	./.
chrX	91132197	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,4:34:180:0.022:2	./.
chrX	91133880	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,40:33:199:0.201:2
chrX	91134112	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:175,17:32:192:0.089:2
chrX	91134236	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,20:29:108:0.185:2
chrX	92927634	rs1045686	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:24,20:33:44:0.455:2	0/1:12,9:33:21:0.429:2	0/1:0,2:32:2:1.00:2	./.	0/1:0,13:29:13:1.00:2	./.	./.	0/1:0,32:33:32:1.00:2	0/1:0,22:33:22:1.00:2	0/1:13,16:33:29:0.552:2	0/1:1,36:32:37:0.973:2
chrX	92964617	rs34123774	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:13,10:31:23:0.435:2	./.	./.	./.
chrX	92965277	rs183867427	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,29:31:68:0.426:2	./.
chrX	92965770	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,4:33:97:0.041:2
chrX	96139406	rs2642219	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,46:30:46:1.00:2	0/1:61,43:30:104:0.413:2	0/1:54,40:30:94:0.426:2	0/1:0,48:31:48:1.00:2	0/1:42,43:31:85:0.506:2	0/1:1,58:31:59:0.983:2
chrX	96139459	rs2642218	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,55:29:56:0.982:2	0/1:71,68:29:139:0.489:2	0/1:84,68:29:152:0.447:2	0/1:0,79:30:79:1.00:2	0/1:68,69:30:137:0.504:2	0/1:0,72:29:72:1.00:2
chrX	96140448	rs371625194	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,4:20:5:0.800:2	./.	./.	./.	./.	./.	./.
chrX	96203991	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:32:137:0.029:2
chrX	96330184	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,7:32:190:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	96330188	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:188,6:26:194:0.031:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	96330239	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:32:172:0.023:2	./.	./.	./.	./.	./.
chrX	99661969	rs1953337	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,108:30:111:0.973:2	./.	./.	./.	0/1:1,80:31:81:0.988:2	./.	./.
chrX	99663194	rs41300169	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:66,44:31:110:0.400:2	0/1:52,30:32:82:0.366:2	./.	./.	./.	./.	0/1:105,91:31:196:0.464:2	./.	./.	./.	./.
chrX	99849017	rs2073162	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:81,51:31:132:0.386:2	0/1:67,55:31:123:0.451:2	0/1:0,27:29:27:1.00:2	0/1:0,100:30:100:1.00:2	./.	./.	0/1:76,59:31:135:0.437:2	0/1:2,135:30:137:0.985:2	0/1:0,84:30:84:1.00:2	./.	./.
chrX	99890204	rs1802288	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,60:30:62:0.968:2	0/1:103,61:30:164:0.372:2	./.	./.	./.	./.
chrX	99919925	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:150,12:17:162:0.074:2	0/1:121,10:17:131:0.076:2	./.	./.	./.
chrX	99919928	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,12:20:163:0.074:2	0/1:124,13:18:137:0.095:2	./.	./.	./.
chrX	99919931	rs199810115	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:129,8:22:137:0.058:2	./.	./.	./.	0/1:118,9:19:128:0.071:2	0/1:103,5:26:108:0.046:2	0/1:143,16:18:160:0.101:2	0/1:119,20:22:140:0.144:2	./.	./.	0/1:93,11:18:104:0.106:2
chrX	99921919	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,4:32:74:0.054:2	./.	./.	./.	./.	./.	./.	./.
chrX	99924268	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,5:33:130:0.038:2	./.	./.
chrX	99925804	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:31:74:0.054:2	./.
chrX	99925943	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,4:32:93:0.043:2	./.
chrX	99941705	rs2022039	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,182:33:182:1.00:2	0/1:0,169:32:169:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,163:33:163:1.00:2	0/1:0,116:32:116:1.00:2	0/1:0,182:32:182:1.00:2	0/1:0,181:32:181:1.00:2	0/1:3,177:33:181:0.983:2	0/1:0,178:33:178:1.00:2	0/1:1,172:33:173:0.994:2	0/1:0,178:32:178:1.00:2
chrX	100077385	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:29:96:0.042:2	./.	./.	./.	./.
chrX	100117526	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:31:141:0.028:2	./.	./.	./.
chrX	100118182	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:32:84:0.048:2	./.	./.	./.	./.	./.
chrX	100169674	rs183844624	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,55:32:108:0.509:2	./.	./.	./.
chrX	100240717	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,3:35:79:0.038:2	./.	./.
chrX	100243459	rs3934462	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,118:31:118:1.00:2	0/1:0,96:32:96:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,84:30:84:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,143:30:143:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,146:31:146:1.00:2	0/1:0,89:31:89:1.00:2
chrX	100245606	rs6523438	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:80,68:30:149:0.459:2	0/1:50,50:28:100:0.500:2	0/1:0,9:28:9:1.00:2	0/1:0,58:30:58:1.00:2	0/1:0,44:28:44:1.00:2	0/1:0,93:29:93:1.00:2	0/1:2,127:29:129:0.984:2	0/1:0,170:29:170:1.00:2	0/1:0,82:30:82:1.00:2	0/1:1,114:29:115:0.991:2	0/1:0,108:29:108:1.00:2
chrX	100276147	rs56176072	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,84:32:87:0.966:2	./.	./.	./.	./.	0/1:76,69:31:145:0.476:2	./.
chrX	100349587	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,4:32:150:0.027:2	./.
chrX	100382609	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:193,4:32:197:0.020:2	0/1:130,5:32:135:0.037:2	./.	./.	./.	./.	./.	./.
chrX	100395663	rs2273380	G	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:57,36:32:93:0.387:2	0/1:48,21:31:69:0.304:2	0/1:0,6:30:6:1.00:2	./.	0/1:4,32:31:36:0.889:2	./.	./.	./.	0/1:1,48:33:49:0.980:2	./.	./.
chrX	100490933	rs7066252	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,59:32:142:0.415:2	./.	./.	./.
chrX	100497403	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,4:31:123:0.033:2	./.
chrX	100532621	rs35899692	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,33:30:111:0.297:2	./.	./.	0/1:0,46:30:47:1.00:2
chrX	100534017	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,4:30:133:0.030:2	./.	./.
chrX	100547933	rs5951328	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,153:33:153:1.00:2	0/1:0,102:32:102:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,114:32:115:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,99:32:100:1.00:2	0/1:0,176:32:176:1.00:2	0/1:0,178:32:178:1.00:2	0/1:0,97:33:97:1.00:2	0/1:0,142:32:142:1.00:2	0/1:0,127:32:127:1.00:2
chrX	100601537	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:105,5:29:110:0.045:2	./.	0/1:108,5:34:113:0.044:2	./.	./.	./.	./.	./.
chrX	100608191	rs1135363	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,46:31:46:1.00:2	0/1:1,44:31:45:0.978:2	0/1:109,4:31:113:0.035:2	./.	0/1:0,59:32:59:1.00:2	./.	./.
chrX	100652809	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:128:0.031:2	./.	./.	./.	./.	./.
chrX	100658928	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,3:32:32:0.094:2	./.	./.	./.	./.	./.
chrX	100668296	rs3027574	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,78:30:78:1.00:2	./.	./.	./.	./.	./.
chrX	100668489	rs41307260	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,39:32:39:1.00:2	./.	./.	./.	0/1:1,58:32:59:0.983:2	./.	./.
chrX	100870904	rs201496081	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,30:31:68:0.441:2	./.	./.	0/1:26,22:31:48:0.458:2	./.	./.
chrX	100871148	rs35319186	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:25,7:33:32:0.219:2	0/1:67,93:32:160:0.581:2	./.	./.	./.	./.	./.	./.	./.
chrX	100880857	rs3205455	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:32:7:0.429:2	0/1:0,18:31:18:1.00:2	./.	./.	./.	./.	./.	./.	./.
chrX	100881434	rs6995	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,57:32:122:0.467:2	./.	./.	0/1:68,50:32:118:0.424:2	./.
chrX	100911066	rs3850315	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:21,26:32:48:0.553:2	0/1:17,16:31:33:0.485:2	0/1:0,2:31:2:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,30:29:30:1.00:2	0/1:0,37:29:37:1.00:2	0/1:17,24:30:41:0.585:2	0/1:0,23:31:23:1.00:2	0/1:0,46:31:47:1.00:2	0/1:0,25:31:25:1.00:2
chrX	101091164	rs6621220	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:76,55:28:131:0.420:2	0/1:2,187:29:189:0.989:2	./.	0/1:2,191:29:193:0.990:2	./.	./.	./.	0/1:85,105:30:190:0.553:2	./.
chrX	101095482	rs146382081	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,45:30:46:0.978:2	0/1:3,160:29:163:0.982:2	./.	0/1:2,158:29:160:0.988:2	./.	./.	./.	0/1:142,22:30:164:0.134:2	./.
chrX	101096219	rs201887839	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:74,23:30:97:0.237:2	0/1:125,71:30:196:0.362:2	./.	0/1:119,75:30:194:0.387:2	./.	./.	./.	0/1:159,36:29:195:0.185:2	./.
chrX	101138792	rs5944882	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,181:30:181:1.00:2	0/1:0,162:29:162:1.00:2	0/1:0,31:29:31:1.00:2	0/1:0,163:30:163:1.00:2	0/1:0,70:30:70:1.00:2	0/1:0,150:29:150:1.00:2	0/1:0,174:29:174:1.00:2	0/1:1,186:29:187:0.995:2	0/1:2,162:30:164:0.988:2	0/1:0,162:29:162:1.00:2	0/1:0,188:29:188:1.00:2
chrX	101139758	rs17282855	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,5:32:7:0.714:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	101382005	rs5944856	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,3:34:7:0.429:2	0/1:2,40:31:42:0.952:2	./.	0/1:0,39:33:39:1.00:2	./.	./.	./.	0/1:31,35:32:66:0.530:2	./.
chrX	101382411	rs5944857	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,2:32:3:0.667:2	0/1:2,28:32:30:0.933:2	./.	0/1:0,24:32:24:1.00:2	./.	./.	./.	0/1:27,18:31:45:0.400:2	./.
chrX	101382417	rs5944858	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:2,25:32:27:0.926:2	./.	0/1:0,26:32:26:1.00:2	./.	./.	./.	0/1:28,20:32:48:0.417:2	./.
chrX	101395854	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.	./.	./.	./.	./.	0/1:192,8:32:200:0.040:2	./.	./.	./.	./.
chrX	101396076	rs111789900	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:120,13:18:133:0.098:2	./.	./.	./.	./.	./.	0/1:128,20:12:148:0.135:2	0/1:101,19:15:120:0.158:2	./.	0/1:103,18:14:121:0.149:2	./.
chrX	101396191	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,4:31:114:0.035:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	101396211	rs56215301	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,62:31:131:0.473:2	0/1:50,34:32:84:0.405:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	101437591	rs186595594	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:191,6:33:197:0.030:2	0/1:185,9:32:194:0.046:2	./.	./.	./.	./.	0/1:191,7:32:198:0.035:2	0/1:183,14:33:197:0.071:2	./.	./.	./.
chrX	101437635	rs5945049	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:38,15:30:53:0.283:2	0/1:7,138:30:145:0.952:2	./.	0/1:1,127:30:128:0.992:2	0/1:117,67:30:184:0.364:2	./.	./.	0/1:2,186:31:188:0.989:2	0/1:6,136:30:142:0.958:2
chrX	101439802	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:33:152:0.026:2	./.	./.	./.
chrX	101478860	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:49,9:30:58:0.155:2	0/1:99,94:30:193:0.487:2	./.	./.	./.	./.	./.	0/1:160,30:31:190:0.158:2	./.
chrX	101478930	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:63,50:31:113:0.442:2	0/1:99,93:30:192:0.484:2	./.	./.	./.	./.	./.	0/1:166,31:31:197:0.157:2	./.
chrX	101479098	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:159,38:32:197:0.193:2	0/1:162,35:32:197:0.178:2	./.	./.	./.	./.	./.	0/1:158,38:32:196:0.194:2	./.	./.	0/1:193,5:33:198:0.025:2
chrX	101479213	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,5:30:200:0.025:2	./.	./.	./.	./.
chrX	101573515	rs199661931	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:95,8:29:103:0.078:2	0/1:108,51:30:159:0.321:2	./.	0/1:128,36:30:164:0.220:2	./.	./.	./.	0/1:182,16:29:198:0.081:2	./.
chrX	101576806	rs200494205	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:170,26:31:196:0.133:2	0/1:143,25:31:168:0.149:2	./.	0/1:172,21:31:193:0.109:2	0/1:179,14:29:193:0.073:2	0/1:176,13:30:191:0.069:2	0/1:183,13:29:196:0.066:2	0/1:174,24:30:198:0.121:2	0/1:179,19:32:198:0.096:2	0/1:172,22:30:194:0.113:2	./.
chrX	101581404	rs200108909	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	101615546	rs373516573	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:14,5:31:19:0.263:2	./.	./.	./.	./.	./.	./.
chrX	101620144	.	C	T	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:184,5:33:189:0.026:2	0/1:161,7:29:169:0.042:2	0/1:12,3:30:15:0.200:2	0/1:34,8:31:42:0.190:2	0/1:36,5:31:41:0.122:2	0/1:33,10:31:43:0.233:2	0/1:191,6:28:197:0.030:2	0/1:192,4:32:196:0.020:2	0/1:18,6:31:24:0.250:2	0/1:38,10:28:48:0.208:2	./.
chrX	101623438	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:102,16:30:118:0.136:2	0/1:147,48:30:195:0.246:2	./.	0/1:137,62:30:199:0.312:2	./.	./.	./.	0/1:177,20:30:197:0.102:2	./.
chrX	101717926	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:172,25:33:197:0.127:2	0/1:155,34:32:189:0.180:2	./.	./.	./.	./.	./.	0/1:168,29:33:197:0.147:2	./.	./.	./.
chrX	101718094	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:72,45:30:117:0.385:2	0/1:101,89:30:190:0.468:2	./.	./.	./.	./.	./.	0/1:158,31:31:189:0.164:2	./.
chrX	101718164	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:47,9:30:56:0.161:2	0/1:115,80:30:195:0.410:2	./.	./.	./.	./.	./.	0/1:150,42:30:192:0.219:2	./.
chrX	101909296	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:29:58:0.069:2	./.	./.	./.	./.	./.
chrX	101909785	rs17339512	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,39:32:39:1.00:2	./.	./.	./.	./.	./.	./.	./.
chrX	101910783	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:32:140:0.029:2	./.
chrX	101911337	rs2073116	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,32:31:62:0.516:2	./.	./.	./.	./.
chrX	101913802	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,52:33:149:0.349:2	./.	./.	./.	./.
chrX	101970316	rs6616421	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,25:28:53:0.472:2	./.	./.	./.	./.
chrX	102004875	rs4514179	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,37:29:87:0.425:2	0/1:20,24:29:44:0.545:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	102006226	rs17342421	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:23,23:31:46:0.500:2	./.	./.	./.	0/1:115,75:32:190:0.395:2	./.	./.	./.	./.
chrX	102007385	rs191389379	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,134:33:136:0.985:2	./.	./.	./.	./.	./.	./.	./.
chrX	102193217	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:32:97:0.042:2	./.
chrX	102317870	rs1045136	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:64,6:30:71:0.086:2	0/1:77,5:32:82:0.061:2	0/1:159,5:28:164:0.030:2	./.	./.	./.	0/1:68,4:32:73:0.056:2
chrX	102317966	rs1045096	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,5:34:98:0.051:2	0/1:187,5:32:192:0.026:2	./.	./.	./.	./.
chrX	102334725	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:107,4:31:111:0.036:2	./.	./.	./.	./.	./.	./.	0/1:157,4:32:161:0.025:2	./.	./.	./.
chrX	102334755	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:107,5:31:112:0.045:2	./.	./.	./.	./.	./.	./.	0/1:166,7:29:173:0.040:2	./.	./.	./.
chrX	102334756	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:107,5:28:112:0.045:2	./.	./.	./.	./.	./.	./.	0/1:167,7:30:174:0.040:2	./.	./.	./.
chrX	102334765	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:38,4:31:42:0.095:2	./.	./.	./.	./.	./.	./.
chrX	102471531	rs1064784	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:53,34:32:87:0.391:2	0/1:30,26:31:56:0.464:2	0/1:0,12:32:12:1.00:2	./.	./.	0/1:3,34:31:37:0.919:2	./.	./.	0/1:0,42:32:42:1.00:2	./.	0/1:0,50:31:50:1.00:2
chrX	102471859	rs41311733	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,32:28:65:0.492:2	0/1:10,15:29:25:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	102528943	.	G	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:178,9:31:188:0.048:2	0/1:183,7:31:190:0.037:2	0/1:93,7:30:100:0.070:2	0/1:180,15:29:195:0.077:2	0/1:187,9:32:197:0.046:2	0/1:193,4:32:197:0.020:2	0/1:172,20:30:192:0.104:2	0/1:170,23:30:193:0.119:2	0/1:185,11:31:196:0.056:2	0/1:166,29:31:195:0.149:2	0/1:182,11:31:193:0.057:2
chrX	102529084	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:161,6:33:167:0.036:2	./.	0/1:146,8:33:154:0.052:2	./.	0/1:152,5:31:157:0.032:2	0/1:171,7:31:178:0.039:2	0/1:181,6:32:187:0.032:2	0/1:158,5:34:163:0.031:2	./.	0/1:145,4:32:149:0.027:2
chrX	102529190	rs6621640	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,38:28:85:0.447:2	./.	./.	./.	./.
chrX	102529246	rs113623139	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:104,11:20:115:0.096:2	./.	./.	0/1:67,12:20:79:0.152:2	0/1:65,25:15:91:0.278:2	./.	0/1:81,22:14:103:0.214:2	0/1:76,8:17:84:0.095:2	./.	0/1:100,23:18:123:0.187:2	0/1:60,13:21:73:0.178:2
chrX	102564583	rs7557	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:1,130:33:131:0.992:2	0/1:1,97:32:98:0.990:2	0/1:0,21:33:21:1.00:2	./.	0/1:0,123:32:123:1.00:2	0/1:3,110:32:114:0.973:2	0/1:101,85:33:186:0.457:2	0/1:95,95:33:190:0.500:2	0/1:0,112:33:112:1.00:2	0/1:100,86:32:186:0.462:2	0/1:1,85:32:86:0.988:2
chrX	102586434	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,4:32:12:0.333:2	./.
chrX	102586670	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:196,4:33:200:0.020:2	./.	./.	./.
chrX	102754976	rs182368469	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:34:197:0.020:2	./.	./.	./.	./.
chrX	102755551	rs1180895	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,130:32:132:0.985:2	./.	./.	./.	0/1:92,84:32:176:0.477:2	./.	0/1:92,85:32:177:0.480:2	./.
chrX	102755652	rs142893565	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,8:30:43:0.186:2	./.	./.	./.	./.	./.	./.	./.
chrX	102840637	.	T	G	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:52,16:11:68:0.235:2	./.	./.	./.	0/1:31,9:15:40:0.225:2	./.	0/1:92,16:11:108:0.148:2	0/1:103,20:12:124:0.163:2	./.	./.	0/1:18,11:12:29:0.379:2
chrX	102842041	rs11010	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,30:29:30:1.00:2	./.	./.	0/1:23,14:26:37:0.378:2	0/1:38,24:28:63:0.387:2	./.	0/1:0,59:29:59:1.00:2	./.
chrX	102842229	rs201993261	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,8:33:52:0.154:2	./.	0/1:34,11:32:45:0.244:2	./.	./.	./.	./.	./.
chrX	102864085	rs141018884	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,72:31:169:0.426:2	./.	./.	./.	./.
chrX	102864179	rs370273681	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,4:30:112:0.036:2	./.	./.	./.	./.	./.	./.	./.
chrX	102864220	.	C	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:82,14:16:96:0.146:2	0/1:76,9:15:85:0.106:2	0/1:91,19:13:110:0.173:2	./.	./.	0/1:107,12:18:119:0.101:2	0/1:46,10:14:56:0.179:2
chrX	102864334	.	G	A,C	.	PASS	AC=7,1;AF=0.292,0.042;AN=24;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	0/1:32:188:0.053:2	0/2:31:148:0.048:2	./.	0/1:32:122:0.074:2	0/1:30:99:0.063:2	0/1:31:141:0.029:2	./.	0/1:28:197:0.041:2	0/1:32:152:0.040:2	0/1:33:196:0.031:2	./.
chrX	102864382	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:33:196:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	102864442	.	A	G	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:168,28:33:196:0.143:2	0/1:174,22:32:196:0.112:2	0/1:109,31:32:140:0.221:2	0/1:165,30:33:195:0.154:2	0/1:160,36:34:196:0.184:2	0/1:165,33:33:198:0.167:2	0/1:151,46:33:197:0.234:2	0/1:173,26:35:199:0.131:2	0/1:162,34:34:196:0.173:2	0/1:165,33:32:198:0.167:2	0/1:177,20:33:197:0.102:2
chrX	102864565	rs74490974	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:125,18:30:143:0.126:2	0/1:111,10:31:121:0.083:2	0/1:45,5:27:50:0.100:2	0/1:103,17:27:120:0.142:2	0/1:88,18:29:106:0.170:2	0/1:118,8:30:127:0.063:2	0/1:131,22:29:153:0.144:2	0/1:162,31:30:193:0.161:2	0/1:108,14:31:122:0.115:2	0/1:132,23:31:155:0.148:2	0/1:129,18:29:147:0.122:2
chrX	102864568	rs75427253	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:127,17:31:144:0.118:2	0/1:107,9:32:116:0.078:2	0/1:45,5:33:50:0.100:2	0/1:100,17:30:117:0.145:2	0/1:87,18:30:105:0.171:2	0/1:115,8:32:123:0.065:2	0/1:122,22:31:144:0.153:2	0/1:161,31:32:192:0.161:2	0/1:110,14:31:124:0.113:2	0/1:137,24:31:161:0.149:2	0/1:126,18:32:144:0.125:2
chrX	102962435	rs145491863	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,32:33:57:0.561:2	./.	./.	./.	./.
chrX	102974040	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:33:185:0.022:2	./.	./.	./.
chrX	102974119	rs41300882	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:17,10:31:27:0.370:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	102978806	rs5945807	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,185:30:190:0.974:2	./.	./.	0/1:98,95:31:193:0.492:2	0/1:94,103:31:197:0.523:2	./.	0/1:2,186:31:188:0.989:2	0/1:0,193:29:193:1.00:2
chrX	102979486	rs4907817	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,184:29:184:1.00:2	0/1:0,114:29:114:1.00:2	0/1:19,18:30:37:0.486:2	0/1:1,176:30:177:0.994:2	0/1:0,188:29:188:1.00:2	0/1:0,176:29:176:1.00:2	0/1:1,171:30:172:0.994:2	0/1:0,174:30:174:1.00:2	./.	0/1:0,194:30:194:1.00:2	0/1:0,121:29:122:1.00:2
chrX	103042882	rs1126707	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,9:29:17:0.529:2	./.	0/1:1,89:27:90:0.989:2	./.	0/1:74,52:29:126:0.413:2	./.	./.	./.	0/1:1,76:27:77:0.987:2
chrX	103267865	rs553509	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:30,56:29:86:0.651:2	0/1:23,32:30:55:0.582:2	0/1:0,8:30:8:1.00:2	0/1:0,47:29:47:1.00:2	./.	0/1:0,65:29:65:1.00:2	0/1:0,97:29:97:1.00:2	0/1:32,44:29:76:0.579:2	0/1:2,43:30:45:0.956:2	0/1:29,41:29:70:0.586:2	./.
chrX	103294760	rs2301384	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:41,35:32:76:0.461:2	0/1:38,21:32:59:0.356:2	0/1:6,7:30:13:0.538:2	./.	./.	0/1:0,81:30:81:1.00:2	0/1:70,51:31:121:0.421:2	0/1:97,78:31:175:0.446:2	./.	0/1:55,45:31:100:0.450:2	./.
chrX	103349929	rs181271641	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,45:30:45:1.00:2	./.	./.	./.	./.	./.	./.
chrX	103360398	rs34462627	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,51:27:52:0.981:2	./.	./.	./.	./.	./.
chrX	103495552	rs41305431	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:33:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	104464069	rs111640100	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,49:32:49:1.00:2
chrX	104464674	rs183606927	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,28:32:52:0.549:2	0/1:16,25:31:41:0.610:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	104650306	rs4826923	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:38,44:32:82:0.537:2	0/1:37,14:32:51:0.275:2	0/1:0,7:33:7:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,59:31:59:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,41:33:41:1.00:2	0/1:46,46:32:92:0.500:2	0/1:0,43:31:43:1.00:2
chrX	104650526	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,5:32:184:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	104650889	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,3:33:46:0.065:2	./.	./.
chrX	104650918	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,4:31:71:0.056:2	0/1:53,3:34:56:0.054:2	./.	./.
chrX	104651000	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant6-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:120,4:31:124:0.032:2	./.	./.	./.	0/1:127,5:30:132:0.038:2	./.	./.	./.	./.	./.
chrX	104651051	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:34:124:0.032:2	./.	./.	./.	./.	./.
chrX	104984578	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:33:196:0.020:2	./.	./.	./.
chrX	104992963	rs3764765	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:2,143:32:145:0.986:2	0/1:0,79:31:79:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:71,71:33:142:0.500:2	./.
chrX	105152282	rs209373	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:104,81:33:185:0.438:2	0/1:74,73:32:147:0.497:2	0/1:18,17:32:35:0.486:2	./.	./.	./.	./.	0/1:108,82:32:190:0.432:2	./.	0/1:111,78:32:189:0.413:2	./.
chrX	105153001	rs209372	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,135:32:135:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,110:31:110:1.00:2	0/1:0,98:31:99:1.00:2	0/1:0,179:32:179:1.00:2	0/1:0,175:32:175:1.00:2	0/1:0,88:32:89:1.00:2	0/1:0,139:32:139:1.00:2	0/1:0,80:32:80:1.00:2
chrX	105451413	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,23:34:76:0.303:2	./.	./.
chrX	105451715	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,17:29:140:0.122:2	./.	./.	./.	./.
chrX	105452537	rs183679493	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:52,37:32:89:0.416:2	0/1:48,32:32:80:0.400:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	105570825	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,6:31:87:0.069:2	./.	./.	./.	./.	./.	./.
chrX	105570947	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:32:67:0.060:2	./.	./.	./.	./.	./.
chrX	105570955	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:34:70:0.057:2	./.	./.	./.	./.	./.
chrX	105855617	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:31:103:0.039:2	./.	./.	./.	./.
chrX	106016245	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:33:130:0.031:2	./.	./.	./.	./.
chrX	106065377	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:33:156:0.026:2
chrX	106092481	rs2340507	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:40,4:30:44:0.091:2	./.	0/1:93,4:31:97:0.041:2	./.	./.	0/1:108,5:31:113:0.044:2	0/1:86,7:32:94:0.075:2
chrX	106171548	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,4:28:55:0.073:2	./.	./.	./.	./.	./.
chrX	106172882	rs41309528	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,20:32:45:0.444:2	./.	./.	./.	./.
chrX	106185364	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:31:86:0.047:2	./.	./.	./.	./.	./.
chrX	106200202	rs6622126	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:77,60:32:137:0.438:2	0/1:56,33:31:89:0.371:2	./.	0/1:2,80:31:82:0.976:2	0/1:1,63:31:64:0.984:2	./.	0/1:103,63:31:166:0.380:2	0/1:104,60:31:164:0.366:2	0/1:0,93:32:93:1.00:2	./.	./.
chrX	106221389	rs41304048	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,34:33:36:0.944:2	./.	./.	./.	0/1:38,36:31:74:0.486:2	./.	./.	./.
chrX	106229311	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:28:72:0.056:2
chrX	106396402	rs1298577	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:84,68:28:152:0.447:2	0/1:58,40:28:98:0.408:2	./.	0/1:1,80:29:81:0.988:2	./.	./.	0/1:107,85:29:192:0.443:2	0/1:1,174:29:175:0.994:2	0/1:0,86:29:86:1.00:2	./.	./.
chrX	106396408	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:35:101:0.040:2	./.	./.
chrX	106396455	rs1285590	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:93,90:30:183:0.492:2	0/1:71,48:30:119:0.403:2	./.	0/1:1,110:30:111:0.991:2	./.	./.	0/1:95,83:30:178:0.466:2	0/1:0,186:30:186:1.00:2	0/1:0,132:31:132:1.00:2	./.	./.
chrX	106515914	rs41307381	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,15:30:38:0.395:2	0/1:33,29:32:62:0.468:2	./.	./.	./.
chrX	106516125	rs4826957	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,24:31:24:1.00:2	./.	./.	0/1:21,27:31:48:0.563:2	0/1:0,59:31:59:1.00:2	0/1:0,35:33:35:1.00:2	./.	./.
chrX	106516786	rs5962813	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,56:32:58:0.966:2	./.	./.	0/1:52,43:32:95:0.453:2	0/1:0,118:32:118:1.00:2	0/1:1,60:33:61:0.984:2	./.	./.
chrX	106843829	rs185843306	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,26:31:72:0.361:2	./.
chrX	106957913	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:48,4:34:52:0.077:2	./.	./.	./.	./.	./.	./.	./.
chrX	107037795	rs5962885	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:49,47:32:96:0.490:2	0/1:20,19:31:39:0.487:2	./.	./.	./.	./.	0/1:37,30:31:67:0.448:2	0/1:41,50:32:91:0.549:2	./.	0/1:26,27:32:53:0.509:2	./.
chrX	107084075	rs2236083	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:144,4:33:148:0.027:2	./.	./.	./.	./.	./.	./.
chrX	107084471	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:30,3:32:33:0.091:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	107159291	rs12849510	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,10:30:31:0.323:2	./.	./.	0/1:27,13:31:40:0.325:2	./.
chrX	107315933	rs17254305	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,75:32:76:0.987:2
chrX	107331236	.	T	G,C	.	PASS	AC=1,1;AF=0.167,0.167;AN=6;SOMATIC;VT=SNP;set=variant2-variant6	GT:BQ:DP:FA:SS	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/2:32:87:0.046:2	./.	./.	./.	0/1:31:170:0.029:2	./.
chrX	107369317	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:33:58:0.069:2	./.	./.	./.	./.	./.
chrX	107377631	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,5:28:197:0.025:2	./.	./.	./.
chrX	107400382	rs200948393	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:79,8:17:87:0.092:2	./.	./.	0/1:123,14:19:137:0.102:2	./.	0/1:100,8:19:108:0.074:2	0/1:60,11:20:71:0.155:2
chrX	107408648	rs145388022	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,38:31:94:0.404:2	./.
chrX	107413851	rs34466065	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,19:31:41:0.463:2	0/1:13,15:32:28:0.536:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	107414040	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,12:33:137:0.088:2	./.
chrX	107417730	rs5973851	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,25:30:25:1.00:2	./.	./.	0/1:0,51:30:51:1.00:2	./.	./.	./.	./.
chrX	107418906	rs4623610	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,164:30:164:1.00:2	0/1:0,104:29:104:1.00:2	0/1:0,20:30:20:1.00:2	0/1:0,110:30:110:1.00:2	0/1:0,87:30:87:1.00:2	0/1:0,128:29:128:1.00:2	0/1:0,159:30:159:1.00:2	0/1:0,183:30:183:1.00:2	0/1:0,115:30:115:1.00:2	0/1:0,172:29:172:1.00:2	0/1:0,131:30:131:1.00:2
chrX	107433688	rs1042065	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,33:31:33:1.00:2	0/1:0,15:32:15:1.00:2	0/1:6,4:26:10:0.400:2	./.	0/1:0,11:31:11:1.00:2	0/1:0,20:32:20:1.00:2	./.	0/1:0,29:31:29:1.00:2	0/1:1,18:33:19:0.947:2	0/1:0,46:32:46:1.00:2	0/1:0,20:32:20:1.00:2
chrX	107448639	rs1266730	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,100:32:102:0.980:2	0/1:0,47:32:47:1.00:2	0/1:9,9:30:18:0.500:2	./.	0/1:0,25:31:25:1.00:2	0/1:0,44:31:44:1.00:2	./.	0/1:0,112:32:112:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,102:32:102:1.00:2	0/1:2,64:32:66:0.970:2
chrX	107681181	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,5:28:183:0.027:2	./.
chrX	107829960	rs104886105	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,4:31:103:0.039:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	107842015	rs188273129	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:3,52:31:56:0.945:2	./.	./.	./.	./.	./.	./.
chrX	107850053	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:30:128:0.031:2	./.	./.
chrX	107918007	rs200814705	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,8:17:43:0.186:2	./.	./.	./.
chrX	107920838	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,4:33:90:0.044:2	./.	./.	./.	./.
chrX	107938127	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:168,4:31:172:0.023:2	./.
chrX	107976806	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:32:157:0.025:2
chrX	107976940	rs1801164	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,19:33:19:1.00:2	0/1:37,3:32:40:0.075:2	./.	0/1:2,50:33:52:0.962:2	./.	./.	./.	./.
chrX	107978342	rs80131334	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,57:31:102:0.559:2	./.	./.	./.	./.
chrX	107978343	rs41307415	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,57:31:102:0.559:2	./.	./.	./.	./.
chrX	107979437	rs73253702	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:49,33:32:82:0.402:2	./.	./.	./.	./.
chrX	107979475	rs1801162	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,49:29:119:0.412:2	./.	./.	./.	./.
chrX	107979512	rs2073114	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,8:32:16:0.500:2	0/1:2,63:32:65:0.969:2	./.	./.	0/1:0,146:32:146:1.00:2	./.	./.	./.	./.
chrX	107979515	rs2073115	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:10,7:31:17:0.412:2	0/1:2,69:32:71:0.972:2	./.	./.	0/1:70,83:32:153:0.542:2	./.	./.	./.	./.
chrX	108638647	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:30:95:0.042:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	108708516	rs502209	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,115:33:115:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,38:31:38:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,98:32:98:1.00:2	0/1:0,126:32:126:1.00:2	./.	0/1:0,71:33:71:1.00:2	0/1:0,66:32:66:1.00:2
chrX	108708552	rs12008095	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,57:28:115:0.496:2	0/1:36,40:28:76:0.526:2	0/1:6,5:27:11:0.455:2	0/1:0,71:28:71:1.00:2	./.	./.	0/1:78,60:29:138:0.435:2	0/1:107,47:28:154:0.305:2	./.	0/1:0,90:28:90:1.00:2	./.
chrX	108868153	rs17003955	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,8:31:8:1.00:2	./.	./.	./.	./.	./.	./.
chrX	108912342	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,4:28:72:0.056:2	./.
chrX	109388062	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:32:118:0.034:2	./.
chrX	109694685	rs2073787	T	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:63,51:31:115:0.447:2	0/1:35,34:32:69:0.493:2	0/1:12,12:31:24:0.500:2	./.	0/1:1,70:29:71:0.986:2	./.	./.	0/1:74,75:29:149:0.503:2	0/1:0,105:31:105:1.00:2	./.	./.
chrX	109697443	rs41306249	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,64:29:108:0.593:2	0/1:25,32:28:57:0.561:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	109931856	rs5943053	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:98,66:33:164:0.402:2	0/1:53,38:31:91:0.418:2	0/1:16,11:32:27:0.407:2	./.	0/1:0,64:32:64:1.00:2	./.	./.	./.	0/1:1,81:33:82:0.988:2	./.	./.
chrX	110035383	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:168,4:32:172:0.023:2	./.	./.	./.	./.	./.	./.
chrX	110385405	rs191705141	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,19:31:66:0.288:2	./.	./.	./.
chrX	110391067	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	110395612	rs16986385	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,42:32:89:0.472:2	./.	./.	./.
chrX	110489871	rs34550022	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,70:33:143:0.490:2	./.	./.	./.
chrX	110494277	rs17882616	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,68:30:148:0.459:2	./.
chrX	110494841	rs12013711	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,56:32:145:0.386:2	./.
chrX	110496310	rs17885163	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:44,34:32:78:0.436:2	./.	./.	./.
chrX	110956481	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,4:32:63:0.063:2	./.	./.	./.	./.	./.	./.	./.
chrX	110963338	rs5985637	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:40,28:30:68:0.412:2	0/1:28,14:30:42:0.333:2	./.	./.	./.	./.	./.	./.	./.	0/1:43,22:30:66:0.338:2	./.
chrX	110967127	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:32:116:0.034:2	./.	./.	./.	./.	./.
chrX	110970254	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,61:32:121:0.504:2	./.
chrX	110987999	rs13440710	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:28:10:0.300:2	./.	./.	./.
chrX	110988002	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,3:26:11:0.273:2	./.	./.	./.
chrX	111698036	rs6568050	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,18:32:38:0.474:2	0/1:0,183:33:183:1.00:2	./.	0/1:0,173:32:173:1.00:2	0/1:103,96:32:199:0.482:2	0/1:0,187:32:187:1.00:2	0/1:0,184:33:184:1.00:2	0/1:107,85:32:192:0.443:2	0/1:0,189:33:189:1.00:2
chrX	111698440	rs7474140	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,85:30:87:0.988:2
chrX	111698613	rs7053563	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:4,7:33:11:0.636:2	0/1:0,61:33:61:1.00:2	./.	0/1:0,50:31:50:1.00:2	0/1:50,44:32:94:0.468:2	0/1:62,44:32:106:0.415:2	0/1:0,58:33:58:1.00:2	./.	./.
chrX	111698895	rs140461317	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,99:31:192:0.516:2	./.
chrX	111699028	rs58883489	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,6:33:9:0.667:2	0/1:1,51:33:52:0.981:2	./.	0/1:0,45:32:45:1.00:2	0/1:35,47:33:82:0.573:2	0/1:34,42:32:76:0.553:2	0/1:1,46:34:47:0.979:2	./.	./.
chrX	111699237	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,4:34:159:0.025:2	./.
chrX	111699407	rs142281620	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,84:32:158:0.532:2	./.	./.	./.
chrX	111699783	rs61710810	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:38,17:33:55:0.309:2	./.	./.	./.
chrX	111700104	rs13440674	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,3:31:11:0.273:2	0/1:0,30:31:30:1.00:2	./.	0/1:0,22:31:22:1.00:2	0/1:62,18:31:80:0.225:2	0/1:47,23:31:70:0.329:2	0/1:1,28:33:29:0.966:2	./.	./.
chrX	111700105	rs13440694	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:8,3:31:11:0.273:2	0/1:0,30:31:30:1.00:2	./.	0/1:1,22:31:23:0.957:2	0/1:62,18:32:80:0.225:2	0/1:50,23:31:73:0.315:2	0/1:1,28:33:29:0.966:2	./.	./.
chrX	111914244	rs7064462	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,39:28:85:0.459:2	0/1:36,37:29:73:0.507:2	./.	./.	./.
chrX	112024157	rs2286063	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,48:28:49:0.980:2	./.	./.	./.	./.	0/1:47,53:30:100:0.530:2	./.
chrX	112066020	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,4:32:175:0.023:2	./.
chrX	113961367	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,8:27:126:0.063:2
chrX	113961410	rs2248440	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,29:31:72:0.403:2	./.	./.	./.	./.
chrX	113965735	rs6318	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,78:32:196:0.398:2	./.	./.	./.	./.
chrX	113965805	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:159,4:32:163:0.025:2
chrX	114082753	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,7:31:128:0.055:2	./.	./.	./.
chrX	114245249	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:33:149:0.027:2	./.
chrX	114424148	rs62601525	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,48:31:101:0.475:2	./.	./.	./.	./.
chrX	114424505	rs62601528	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.	./.	./.
chrX	114424508	rs12848233	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	0/1:0,9:31:9:1.00:2	./.	./.	./.	./.	./.
chrX	114424711	rs182342906	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,5:33:5:1.00:2	./.	./.
chrX	114424734	rs184389455	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,8:29:8:1.00:2	./.	./.	./.	./.	./.	./.	./.
chrX	114424814	rs188427252	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,25:32:54:0.463:2	0/1:22,13:32:35:0.371:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	114424836	rs62601529	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:46,50:30:96:0.521:2	./.	./.	./.	./.
chrX	114424941	rs62601530	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,52:31:125:0.416:2	./.	./.	./.	./.
chrX	114425196	rs12399211	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,9:28:10:0.900:2	0/1:1,14:29:15:0.933:2	0/1:5,16:30:21:0.762:2	./.	./.	./.	./.	0/1:1,7:29:8:0.875:2
chrX	114425210	rs12399213	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:31:7:0.571:2	0/1:4,10:31:14:0.714:2	0/1:11,9:33:20:0.450:2	./.	./.	./.	./.	0/1:1,5:32:6:0.833:2
chrX	114425238	rs55718100	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,6:31:10:0.600:2	./.	./.	./.	./.
chrX	114425400	rs12857270	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,40:32:40:1.00:2	0/1:0,28:32:28:1.00:2	0/1:1,2:34:3:0.667:2	0/1:0,14:31:14:1.00:2	./.	0/1:0,18:31:18:1.00:2	0/1:21,22:31:43:0.512:2	0/1:0,20:31:20:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,26:32:26:1.00:2	0/1:1,12:32:13:0.923:2
chrX	114425923	rs142223554	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,49:30:66:0.742:2	./.	./.	./.	./.
chrX	114426171	rs5946294	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:31:29:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,37:31:37:1.00:2	0/1:1,14:32:15:0.933:2	0/1:0,23:31:23:1.00:2	0/1:0,27:31:27:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,47:31:47:1.00:2	0/1:0,12:32:12:1.00:2
chrX	114426193	rs186877600	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:14,17:32:31:0.548:2	0/1:10,9:32:19:0.474:2	./.	./.	./.	./.	0/1:11,10:32:21:0.476:2	./.	./.	0/1:16,18:32:34:0.529:2	./.
chrX	114426385	rs80194951	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,37:30:60:0.617:2	./.	./.	./.	./.
chrX	114426765	rs11795689	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	0/1:0,13:30:13:1.00:2	./.	./.	./.	./.	./.	./.
chrX	114426917	rs4911809	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,72:30:73:1.00:2	0/1:0,40:31:40:1.00:2	0/1:12,9:30:21:0.429:2	0/1:0,56:30:56:1.00:2	./.	0/1:0,60:30:60:1.00:2	0/1:58,61:31:119:0.513:2	0/1:0,115:31:115:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,85:31:85:1.00:2	0/1:0,30:31:30:1.00:2
chrX	114427149	rs6643947	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,5:27:9:0.556:2	./.	0/1:0,12:30:12:1.00:2	./.	./.	./.	./.	./.	./.
chrX	114541027	rs2232736	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:6,15:32:21:0.714:2	./.	0/1:0,53:32:53:1.00:2	./.	./.	./.	0/1:1,98:33:99:0.990:2	./.	./.
chrX	114541247	rs138059569	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,11:25:137:0.080:2	./.
chrX	114541249	rs142528427	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,12:28:131:0.092:2	./.
chrX	114541251	rs146034702	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,12:29:132:0.091:2	./.
chrX	114541277	rs141415241	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,11:32:122:0.090:2	./.
chrX	115304824	rs5193	G	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant5-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,16:31:18:0.889:2	./.	0/1:51,17:32:68:0.250:2	./.	./.	./.	0/1:3,67:32:70:0.957:2
chrX	115304830	rs5194	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,9:32:17:0.529:2	./.	0/1:0,18:32:18:1.00:2	0/1:0,49:32:49:1.00:2	0/1:1,59:32:60:0.983:2	./.	./.	0/1:0,136:33:136:1.00:2	0/1:2,65:33:67:0.970:2
chrX	115305126	rs11091046	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:9,12:29:21:0.571:2	./.	0/1:0,32:28:32:1.00:2	0/1:0,43:29:43:1.00:2	0/1:0,63:29:63:1.00:2	./.	./.	0/1:1,109:29:110:0.991:2	0/1:2,90:29:92:0.978:2
chrX	115305728	rs12845035	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:20,20:34:40:0.500:2	0/1:17,5:32:22:0.227:2	./.	0/1:2,20:33:22:0.909:2	./.	./.	./.	0/1:0,25:32:25:1.00:2	0/1:0,9:34:9:1.00:2	./.	./.
chrX	115305810	rs17231478	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,13:32:13:1.00:2	./.	./.	./.	./.	./.	0/1:0,15:31:15:1.00:2
chrX	115568993	rs12720074	T	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:12,20:32:32:0.625:2	0/1:13,8:32:21:0.381:2	./.	./.	./.	./.	./.	0/1:20,18:32:38:0.474:2	0/1:0,26:33:26:1.00:2	./.	./.
chrX	115585549	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,6:32:88:0.068:2	./.
chrX	115585593	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,6:32:69:0.087:2	./.
chrX	115592933	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:32:117:0.034:2	./.	./.	./.	./.	./.
chrX	117053652	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,4:32:161:0.025:2	./.	./.	./.
chrX	117528142	rs6603401	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:15,7:33:22:0.318:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	117532349	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:33:199:0.020:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	117676909	rs17326744	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,42:33:44:0.955:2	./.	./.	./.	./.	./.
chrX	117700141	rs2286977	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,32:30:32:1.00:2	0/1:27,28:31:55:0.509:2	./.	./.	0/1:38,28:31:66:0.424:2	0/1:0,53:32:53:1.00:2
chrX	117706336	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:121,4:32:125:0.032:2	./.	./.	./.	./.	./.	./.	./.
chrX	117706342	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:125,5:29:130:0.038:2	./.	./.	./.	./.	./.	./.	0/1:194,4:32:198:0.020:2
chrX	117707943	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,5:30:109:0.046:2	./.	./.
chrX	117722176	rs41312765	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,15:31:15:1.00:2	./.	0/1:5,13:31:18:0.722:2	0/1:26,27:31:53:0.509:2	./.	./.	./.
chrX	117739235	rs149752909	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,182:30:187:0.973:2	./.	./.
chrX	117749624	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:88,4:31:92:0.043:2	./.	./.	./.	./.	./.	./.
chrX	117752640	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,3:33:31:0.097:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	117752649	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,3:31:29:0.103:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	117761502	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:115,12:18:127:0.094:2	./.	./.	./.	./.	0/1:72,14:13:86:0.163:2	./.	0/1:138,18:13:156:0.115:2	./.	./.	./.
chrX	117773492	rs183806209	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:165,5:31:170:0.029:2	./.	./.	./.	./.	./.	./.
chrX	117773501	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:157,4:32:161:0.025:2	./.	./.	./.	./.	./.	./.
chrX	117815048	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,4:32:105:0.038:2	./.	./.
chrX	117900858	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:33:178:0.022:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	117907850	rs139927088	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,17:30:17:1.00:2	./.	./.	./.	./.	./.
chrX	117960466	rs192025061	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,8:32:33:0.242:2	./.	./.	./.
chrX	118108785	rs3813933	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:12,10:28:22:0.455:2	0/1:2,87:29:89:0.978:2	0/1:0,128:28:128:1.00:2	./.	./.	0/1:3,128:29:131:0.977:2	./.	./.	0/1:0,52:30:52:1.00:2
chrX	118108953	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:33:40:0.100:2	./.
chrX	118116842	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,3:32:42:0.071:2	./.	./.	./.	./.	./.
chrX	118148229	rs2278954	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:69,49:30:118:0.415:2	0/1:36,33:29:69:0.478:2	./.	./.	./.	0/1:0,86:29:86:1.00:2	0/1:5,153:30:158:0.968:2	./.	./.	0/1:1,120:30:121:0.992:2	./.
chrX	118219347	rs2305570	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,56:32:131:0.427:2	./.	./.	./.
chrX	118220720	rs3813932	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,73:30:132:0.553:2	./.	./.	./.
chrX	118221048	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:33:52:0.077:2	./.
chrX	118222360	rs3761592	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,57:30:113:0.504:2	./.	./.	./.
chrX	118281538	rs5910522	C	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:30:58:1.00:2	0/1:0,48:31:49:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,69:31:69:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,42:30:42:1.00:2	0/1:0,74:31:74:1.00:2	0/1:0,101:31:102:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,93:31:93:1.00:2	0/1:0,44:31:44:1.00:2
chrX	118284342	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,4:32:108:0.037:2	./.
chrX	118513740	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,6:32:112:0.054:2	./.	./.	./.	./.	./.
chrX	118514072	rs217941	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:80,88:33:168:0.524:2	0/1:38,43:31:81:0.531:2	0/1:0,16:32:16:1.00:2	0/1:1,85:32:86:0.988:2	./.	./.	0/1:62,53:32:115:0.461:2	0/1:96,89:32:185:0.481:2	0/1:1,90:33:92:0.989:2	0/1:84,68:32:152:0.447:2	0/1:1,104:32:106:0.990:2
chrX	118514315	rs217942	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.	0/1:3,3:32:6:0.500:2	0/1:9,5:30:14:0.357:2	0/1:0,5:30:5:1.00:2	0/1:7,5:31:12:0.417:2	0/1:0,8:33:8:1.00:2
chrX	118587003	rs3810755	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,37:32:87:0.425:2	0/1:25,16:32:41:0.390:2	0/1:4,8:32:12:0.667:2	0/1:0,38:33:38:1.00:2	0/1:0,24:32:24:1.00:2	0/1:2,35:30:37:0.946:2	0/1:30,21:33:51:0.412:2	0/1:37,34:33:71:0.479:2	0/1:0,60:33:60:1.00:2	0/1:36,33:32:70:0.478:2	0/1:0,60:33:60:1.00:2
chrX	118603773	rs148920941	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:53,4:32:57:0.070:2	./.	0/1:43,5:35:48:0.104:2	0/1:20,4:33:24:0.167:2	0/1:46,3:32:49:0.061:2	0/1:58,6:32:64:0.094:2	./.	./.	0/1:73,7:34:80:0.088:2	0/1:54,7:30:61:0.115:2
chrX	118603818	rs77766798	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:66,4:31:71:0.057:2	./.	0/1:64,8:28:72:0.111:2	./.	0/1:83,6:31:89:0.067:2	0/1:96,6:31:102:0.059:2	./.	0/1:57,8:29:66:0.123:2	0/1:119,9:30:128:0.070:2	0/1:72,7:32:80:0.089:2
chrX	118603830	rs73637847	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:71,4:33:75:0.053:2	./.	0/1:76,7:32:83:0.084:2	./.	0/1:86,6:30:92:0.065:2	0/1:112,6:31:118:0.051:2	./.	0/1:66,7:32:73:0.096:2	0/1:128,9:32:137:0.066:2	0/1:80,7:31:87:0.080:2
chrX	118603844	rs371749	T	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,113:28:116:0.974:2	0/1:4,66:29:70:0.943:2	0/1:6,7:29:13:0.538:2	0/1:6,67:29:73:0.918:2	0/1:3,57:28:60:0.950:2	0/1:6,91:28:97:0.938:2	0/1:76,59:30:135:0.437:2	0/1:5,139:29:144:0.965:2	0/1:7,75:29:82:0.915:2	0/1:86,57:29:143:0.399:2	0/1:7,83:29:90:0.922:2
chrX	118604436	rs12390	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,124:28:126:0.984:2	0/1:0,97:28:97:1.00:2	0/1:11,13:29:24:0.542:2	0/1:0,127:29:127:1.00:2	0/1:1,129:28:130:0.992:2	0/1:0,119:29:119:1.00:2	0/1:93,74:28:167:0.443:2	0/1:0,175:28:175:1.00:2	0/1:0,102:29:102:1.00:2	0/1:86,72:28:158:0.456:2	0/1:0,93:28:94:1.00:2
chrX	118676507	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,6:31:197:0.030:2	./.	./.	./.	./.	./.
chrX	118678364	rs5910611	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,79:30:79:1.00:2	0/1:1,47:31:48:0.979:2	./.	./.	0/1:0,38:29:38:1.00:2	0/1:0,33:30:34:1.00:2	./.	0/1:2,76:31:78:0.974:2	0/1:0,41:31:41:1.00:2	0/1:38,30:30:68:0.441:2	0/1:0,40:29:40:1.00:2
chrX	118694305	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:44,3:36:47:0.064:2	./.	./.	./.	./.	./.	./.
chrX	118694308	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,3:35:48:0.063:2	./.	./.	./.	./.	./.	./.
chrX	118699210	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:67,6:32:73:0.082:2	./.	./.	./.	./.	./.	./.
chrX	118699232	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:83,6:31:89:0.067:2	./.	./.	./.	./.	./.	./.
chrX	118763406	rs3088376	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,34:32:85:0.400:2	./.	./.	./.	./.
chrX	118892760	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	118893054	rs2782223	C	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,18:32:18:1.00:2	0/1:0,11:32:11:1.00:2	./.	./.	0/1:0,6:31:6:1.00:2	0/1:0,9:31:9:1.00:2	0/1:2,8:31:10:0.800:2	./.	0/1:0,6:32:6:1.00:2	0/1:0,15:31:15:1.00:2	./.
chrX	118893137	rs2782224	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,17:31:17:1.00:2	0/1:0,9:33:9:1.00:2	./.	./.	0/1:0,6:31:6:1.00:2	0/1:0,4:31:4:1.00:2	./.	0/1:18,6:29:24:0.250:2	0/1:0,9:31:9:1.00:2	0/1:0,11:31:11:1.00:2	./.
chrX	118893413	rs2782225	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,31:29:31:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,7:28:7:1.00:2	./.	0/1:0,21:28:21:1.00:2	0/1:1,15:28:16:0.938:2	0/1:13,22:28:35:0.629:2	0/1:35,25:28:60:0.417:2	0/1:0,26:28:26:1.00:2	0/1:0,19:30:19:1.00:2	0/1:0,9:28:9:1.00:2
chrX	118925181	rs41304508	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,13:31:13:1.00:2	./.	0/1:2,61:30:63:0.968:2	./.	./.	./.	0/1:0,46:32:46:1.00:2	./.	./.
chrX	118925558	rs183780506	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:32:144:0.028:2	./.	./.
chrX	119005587	rs1800823	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,47:30:100:0.470:2	./.	./.	0/1:34,37:29:71:0.521:2	./.
chrX	119005705	rs708463	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:0,20:29:20:1.00:2	0/1:0,17:31:17:1.00:2	./.	0/1:0,18:27:18:1.00:2	./.	0/1:0,18:27:18:1.00:2	0/1:1,33:27:34:0.971:2	0/1:27,18:26:45:0.400:2	./.	0/1:0,32:27:32:1.00:2	0/1:0,13:26:13:1.00:2
chrX	119065893	rs194302	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,9:31:25:0.360:2	0/1:3,54:30:57:0.947:2	0/1:0,33:29:33:1.00:2	./.	0/1:77,43:31:120:0.358:2	0/1:82,51:30:133:0.383:2	0/1:0,69:31:69:1.00:2	0/1:68,55:31:123:0.447:2	0/1:0,99:31:101:1.00:2
chrX	119070315	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,4:32:173:0.023:2	./.	./.	./.	./.	./.
chrX	119070567	rs194308	A	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:1,5:30:6:0.833:2	0/1:1,25:31:26:0.962:2	0/1:0,21:31:21:1.00:2	./.	0/1:22,12:31:34:0.353:2	0/1:20,27:31:47:0.574:2	0/1:1,38:32:39:0.974:2	0/1:14,25:32:39:0.641:2	0/1:0,54:31:54:1.00:2
chrX	119206644	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,36:33:191:0.188:2	./.	./.	./.	./.
chrX	119209844	rs202178738	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:123,40:32:163:0.245:2	0/1:111,83:32:194:0.428:2	0/1:101,92:31:193:0.477:2	./.	0/1:165,33:32:198:0.167:2	./.	./.	./.	./.
chrX	119209876	rs201815129	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,28:32:194:0.144:2	./.	./.	./.	./.
chrX	119211056	rs375698805	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,4:24:5:0.800:2	./.	./.	./.	./.	./.	./.
chrX	119293102	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:125,4:32:129:0.031:2
chrX	119294298	rs199871532	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:156,41:31:197:0.208:2	./.	./.	./.	./.
chrX	119294330	rs201817230	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:134,26:31:160:0.163:2	0/1:100,85:32:185:0.459:2	0/1:97,89:32:186:0.478:2	./.	0/1:149,43:32:192:0.224:2	./.	./.	./.	./.
chrX	119297530	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,36:33:193:0.187:2	./.	./.	./.	./.
chrX	119389966	rs7882480	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,31:32:31:1.00:2	0/1:0,32:32:32:1.00:2	./.	./.	0/1:0,17:32:17:1.00:2	0/1:0,19:32:19:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,25:33:25:1.00:2	0/1:14,26:31:40:0.650:2	0/1:1,22:31:23:0.957:2
chrX	119390465	rs11537755	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,65:27:65:1.00:2	0/1:1,33:29:34:0.971:2	./.	./.	0/1:0,27:27:27:1.00:2	./.	0/1:0,41:27:41:1.00:2	./.	0/1:0,37:28:37:1.00:2	0/1:43,36:27:80:0.456:2	0/1:0,43:28:43:1.00:2
chrX	119390665	rs5910810	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,21:31:33:0.656:2	0/1:8,6:26:14:0.429:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,16:30:17:0.941:2
chrX	119390923	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,4:30:106:0.038:2	./.
chrX	119391880	rs1044413	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,28:32:28:1.00:2	0/1:0,26:32:26:1.00:2	./.	./.	0/1:0,17:32:17:1.00:2	./.	0/1:0,24:32:24:1.00:2	./.	0/1:0,15:33:15:1.00:2	0/1:25,12:33:37:0.324:2	0/1:0,19:33:19:1.00:2
chrX	119590533	rs12097	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:0,194:31:194:1.00:2	0/1:0,109:32:109:1.00:2	0/1:20,24:31:44:0.545:2	./.	./.	0/1:3,144:31:147:0.980:2	0/1:4,194:32:198:0.980:2	0/1:1,196:31:197:0.995:2	./.	0/1:114,85:31:199:0.427:2	./.
chrX	119677583	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:102,8:30:111:0.073:2	./.	./.	./.	./.
chrX	119746101	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:191,4:33:195:0.021:2
chrX	119760594	rs45557031	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:25,8:30:33:0.242:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	119760629	rs17261572	A	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,89:31:91:0.978:2	0/1:83,49:32:132:0.371:2	0/1:100,85:32:185:0.459:2	./.	./.	./.
chrX	120008979	rs871733	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,27:30:27:1.00:2	0/1:0,13:30:13:1.00:2	./.	0/1:0,7:32:7:1.00:2	0/1:0,12:30:12:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,7:30:7:1.00:2	./.	0/1:0,10:33:10:1.00:2	./.	./.
chrX	120181641	rs191769566	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.
chrX	120182480	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,7:32:53:0.132:2	./.	./.	./.	./.	./.	0/1:182,10:30:193:0.052:2	./.	./.
chrX	120182659	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,4:32:74:0.055:2	0/1:123,6:33:129:0.047:2	./.	./.	0/1:107,5:28:113:0.045:2	0/1:112,4:32:116:0.034:2
chrX	120182689	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,10:31:148:0.068:2	./.	./.	./.	0/1:109,4:31:113:0.035:2
chrX	120182780	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,4:32:84:0.048:2	./.	./.	./.	./.
chrX	120182805	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,4:30:82:0.049:2	./.	./.	./.	./.
chrX	120183017	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,53:32:112:0.473:2	0/1:24,29:31:53:0.547:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	120183158	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:119,4:31:123:0.033:2	./.	./.	./.	./.	./.
chrX	120183428	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:25,3:34:28:0.107:2	./.	./.
chrX	120183612	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,5:29:182:0.027:2	./.	./.	./.	./.	./.
chrX	120183639	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:32:178:0.022:2	./.
chrX	122250996	rs6648942	G	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:106,73:32:179:0.408:2	0/1:84,83:32:167:0.497:2	0/1:25,23:31:48:0.479:2	./.	./.	./.	0/1:113,83:31:196:0.423:2	./.	0/1:0,182:32:182:1.00:2	./.	0/1:2,177:31:179:0.989:2
chrX	122251143	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:33:102:0.040:2
chrX	122251477	rs59604036	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,4:31:157:0.025:2
chrX	122318450	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,39:30:76:0.513:2	0/1:40,33:31:73:0.452:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	122537277	rs502434	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:59,38:30:97:0.392:2	0/1:32,37:30:69:0.536:2	0/1:0,13:30:13:1.00:2	0/1:0,48:30:48:1.00:2	./.	0/1:1,68:30:69:0.986:2	0/1:64,48:30:112:0.429:2	0/1:0,140:30:140:1.00:2	0/1:1,67:31:68:0.985:2	./.	0/1:1,63:30:65:0.984:2
chrX	122695978	rs72631819	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,39:31:113:0.345:2	0/1:28,25:31:53:0.472:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	122756633	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,4:33:95:0.042:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	122805523	rs188944089	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,80:32:171:0.468:2	./.	./.	./.	./.
chrX	123034508	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.	./.
chrX	123034509	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,4:32:183:0.022:2	./.	0/1:185,4:32:189:0.021:2	./.	./.	./.
chrX	123034511	rs5956583	A	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:106,86:33:192:0.448:2	0/1:101,92:32:193:0.477:2	0/1:33,30:33:63:0.476:2	./.	./.	0/1:5,168:32:173:0.971:2	0/1:122,74:32:196:0.378:2	./.	./.	0/1:90,92:33:182:0.505:2	./.
chrX	123034529	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:32:188:0.021:2	./.
chrX	123040948	rs61752967	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,5:34:138:0.036:2
chrX	123040978	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,7:28:140:0.050:2
chrX	123041007	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant2-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:35:156:0.026:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:152,4:36:156:0.026:2	0/1:113,4:35:117:0.034:2
chrX	123179110	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,6:31:149:0.041:2	0/1:78,4:31:82:0.049:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	123526031	rs2076165	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,48:29:49:0.980:2	./.	0/1:87,5:29:92:0.054:2	./.	./.	./.
chrX	123540315	rs960869	G	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,82:33:82:1.00:2	0/1:1,47:32:48:0.979:2	./.	0/1:1,28:31:29:0.966:2	0/1:2,47:31:49:0.959:2	./.	0/1:3,72:31:75:0.960:2	0/1:60,46:32:106:0.434:2	0/1:0,41:33:41:1.00:2	./.	./.
chrX	123787593	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,4:32:92:0.043:2	./.	./.	./.
chrX	123870828	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:49,5:31:54:0.093:2	./.	./.	./.	./.	./.	./.
chrX	124097564	rs143307335	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:74,81:30:155:0.523:2	0/1:52,54:29:106:0.509:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	125298690	rs3761552	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,94:31:94:1.00:2	./.	0/1:65,68:31:133:0.511:2	0/1:74,73:31:147:0.497:2	./.	0/1:0,116:31:116:1.00:2	./.
chrX	125299188	rs12014937	T	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,44:29:44:1.00:2	./.	0/1:36,33:30:69:0.478:2	0/1:37,40:31:77:0.519:2	./.	0/1:19,27:31:46:0.587:2	./.
chrX	125299467	rs10126452	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,44:30:44:1.00:2	./.	0/1:29,28:30:57:0.491:2	0/1:52,59:30:111:0.532:2	./.	0/1:0,84:30:84:1.00:2	./.
chrX	125954753	rs41309538	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:64,70:32:134:0.522:2	0/1:46,33:32:79:0.418:2	0/1:8,5:32:13:0.385:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	125954964	rs12835991	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,44:32:46:0.957:2	./.	./.	./.	./.	0/1:0,31:33:31:1.00:2	./.	./.
chrX	125955199	rs4289953	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:37,38:30:75:0.507:2	./.
chrX	125955358	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,4:32:152:0.026:2	./.
chrX	125955428	rs2269777	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,29:32:68:0.426:2	0/1:25,19:32:44:0.432:2	./.	./.	./.	0/1:0,44:30:44:1.00:2	0/1:0,52:31:52:1.00:2	0/1:1,47:31:48:0.979:2	./.	./.	./.
chrX	128691324	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:41,4:33:45:0.089:2	./.
chrX	128703341	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:132,4:34:136:0.029:2
chrX	128880614	rs3747343	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,88:30:189:0.466:2	0/1:88,43:30:131:0.328:2	0/1:13,16:30:29:0.552:2	0/1:4,117:30:121:0.967:2	0/1:2,90:30:92:0.978:2	./.	./.	./.	./.	./.	./.
chrX	128927012	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,4:33:77:0.052:2
chrX	129045024	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:96,4:29:100:0.040:2	./.	./.	./.	./.	./.	./.
chrX	129054446	rs35183830	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,65:32:135:0.481:2	./.	./.	./.	./.
chrX	129058882	rs2281278	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,38:30:72:0.535:2	./.
chrX	129060281	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:33:80:0.050:2
chrX	129060306	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:33:63:0.063:2
chrX	129147079	rs4830173	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,105:32:105:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,14:32:14:1.00:2	0/1:0,76:32:76:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,136:32:136:1.00:2	0/1:0,169:32:169:1.00:2	0/1:0,73:33:73:1.00:2	0/1:0,120:32:120:1.00:2	0/1:0,65:32:65:1.00:2
chrX	129147373	rs5932715	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,6:32:13:0.462:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	129189954	rs200910217	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,11:12:61:0.180:2	./.	0/1:52,11:16:63:0.175:2	./.
chrX	129201179	rs2181440	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,4:33:5:0.800:2	./.	0/1:0,24:31:24:1.00:2	0/1:0,22:31:22:1.00:2	./.	0/1:14,23:31:37:0.622:2	./.	0/1:17,10:33:27:0.370:2	0/1:0,22:31:22:1.00:2
chrX	129203355	rs9282674	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,21:32:53:0.396:2	0/1:10,16:31:26:0.615:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	129206391	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,4:30:70:0.057:2	./.	./.	./.	./.	./.
chrX	129283520	rs1139851	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:59,47:30:106:0.443:2	0/1:38,17:30:55:0.309:2	0/1:0,18:29:18:1.00:2	./.	./.	0/1:0,56:30:56:1.00:2	0/1:46,23:31:69:0.333:2	./.	./.	0/1:47,48:30:95:0.505:2	0/1:3,57:30:60:0.950:2
chrX	129349295	rs209238	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:31,21:31:52:0.404:2	0/1:23,13:32:36:0.361:2	0/1:0,5:32:5:1.00:2	./.	./.	0/1:0,19:32:19:1.00:2	0/1:27,19:32:46:0.413:2	./.	./.	0/1:15,19:31:34:0.559:2	0/1:0,45:32:45:1.00:2
chrX	129518716	rs41310452	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,46:34:48:0.958:2	./.	./.
chrX	129543273	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,4:34:155:0.026:2	./.	./.	./.
chrX	129543337	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,4:32:189:0.021:2	./.
chrX	129629350	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,5:33:104:0.048:2	./.	0/1:120,7:31:127:0.055:2
chrX	129629382	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:53,3:33:56:0.054:2	./.	./.	./.	./.	./.
chrX	129630074	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:167,31:32:198:0.157:2	0/1:167,28:32:195:0.144:2	0/1:40,13:31:53:0.245:2	0/1:143,42:32:185:0.227:2	0/1:111,43:30:154:0.279:2	0/1:124,71:31:195:0.364:2	0/1:156,36:32:192:0.188:2	0/1:152,40:32:192:0.208:2	0/1:147,45:32:192:0.234:2	0/1:164,29:32:193:0.150:2	0/1:147,45:32:192:0.234:2
chrX	129630630	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:105,5:32:110:0.045:2	./.	./.	./.	./.	./.	0/1:141,6:32:147:0.041:2
chrX	129630730	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:39,10:13:51:0.204:2	./.	./.	0/1:62,18:12:81:0.225:2	./.	./.	0/1:51,11:14:64:0.177:2	./.
chrX	129630972	rs199851627	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:85,43:30:128:0.336:2	0/1:52,32:30:84:0.381:2	0/1:12,7:30:19:0.368:2	./.	0/1:58,16:30:74:0.216:2	0/1:40,50:30:90:0.556:2	0/1:62,25:31:87:0.287:2	0/1:77,50:30:127:0.394:2	0/1:85,40:31:125:0.320:2	0/1:95,17:31:112:0.152:2	0/1:82,74:31:156:0.474:2
chrX	129631156	rs201998144	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:143,53:32:196:0.270:2	0/1:63,35:31:98:0.357:2	0/1:20,13:31:33:0.394:2	./.	0/1:45,32:31:77:0.416:2	0/1:79,79:30:158:0.500:2	0/1:107,60:31:167:0.359:2	0/1:125,72:31:197:0.365:2	0/1:101,52:33:153:0.340:2	0/1:102,37:31:140:0.266:2	0/1:77,66:32:143:0.462:2
chrX	129631276	rs11795916	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:159,11:32:170:0.065:2	0/1:94,11:31:105:0.105:2	./.	./.	0/1:54,15:33:69:0.217:2	0/1:79,18:31:97:0.186:2	0/1:66,9:34:76:0.120:2	0/1:145,12:32:157:0.076:2	0/1:101,11:31:112:0.098:2	0/1:120,13:30:133:0.098:2	0/1:127,18:32:146:0.124:2
chrX	129631465	rs372421556	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:34,11:31:45:0.244:2	0/1:22,5:31:27:0.185:2	./.	0/1:20,8:31:28:0.286:2	0/1:17,7:30:24:0.292:2	0/1:28,7:30:35:0.200:2	0/1:32,7:31:39:0.179:2	0/1:37,5:31:42:0.119:2	0/1:19,11:32:30:0.367:2	0/1:40,8:28:48:0.167:2	0/1:40,13:31:53:0.245:2
chrX	130408745	rs6529473	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,64:30:64:1.00:2	./.	./.	./.	0/1:77,65:31:142:0.458:2	./.
chrX	130410965	rs4830219	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:1,70:28:71:0.986:2	0/1:0,53:28:53:1.00:2	./.	0/1:0,43:28:43:1.00:2	./.	./.	0/1:76,41:28:117:0.350:2	0/1:52,44:28:96:0.458:2	0/1:0,43:29:43:1.00:2	./.	./.
chrX	130415818	rs1128617	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,70:32:70:1.00:2	0/1:2,48:33:50:0.960:2	./.	./.	./.	0/1:0,36:33:36:1.00:2	./.	0/1:37,33:33:70:0.471:2	0/1:0,53:34:53:1.00:2	0/1:36,33:33:69:0.478:2	./.
chrX	130416958	rs5932877	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,116:31:116:1.00:2	0/1:0,68:32:68:1.00:2	0/1:0,14:31:14:1.00:2	0/1:0,37:31:37:1.00:2	0/1:1,21:30:22:0.955:2	0/1:0,58:30:58:1.00:2	0/1:0,59:31:60:1.00:2	0/1:0,73:30:73:1.00:2	0/1:0,68:32:68:1.00:2	0/1:1,86:31:87:0.989:2	0/1:0,66:31:66:1.00:2
chrX	130420006	rs5930458	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:29:77:1.00:2	0/1:0,39:28:39:1.00:2	0/1:0,13:28:13:1.00:2	0/1:0,46:29:46:1.00:2	0/1:0,17:28:17:1.00:2	0/1:0,32:28:32:1.00:2	0/1:0,48:28:48:1.00:2	0/1:0,76:29:76:1.00:2	0/1:0,31:29:31:1.00:2	0/1:0,56:28:56:1.00:2	0/1:0,43:28:43:1.00:2
chrX	130420415	rs4495600	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:30:79:1.00:2	0/1:0,35:30:35:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,58:30:58:1.00:2	0/1:0,69:30:69:1.00:2	0/1:0,47:30:47:1.00:2	0/1:0,127:31:127:1.00:2	0/1:0,123:30:123:1.00:2	0/1:0,64:30:64:1.00:2	0/1:0,80:31:80:1.00:2	0/1:0,64:30:64:1.00:2
chrX	130678467	rs499030	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,35:31:35:1.00:2	0/1:139,4:32:143:0.028:2	./.	0/1:0,153:32:153:1.00:2	0/1:110,88:31:198:0.444:2	0/1:93,103:33:196:0.526:2	0/1:0,134:33:134:1.00:2	0/1:102,88:32:190:0.463:2	0/1:0,97:32:97:1.00:2
chrX	130678596	rs17316625	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,20:33:20:1.00:2	./.	./.	./.	0/1:108,83:32:192:0.435:2	0/1:100,90:32:190:0.474:2	./.	0/1:110,84:33:195:0.433:2	0/1:2,113:33:115:0.983:2
chrX	130678844	rs655415	A	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,15:32:15:1.00:2	./.	./.	0/1:1,85:31:86:0.988:2	0/1:59,62:32:121:0.512:2	0/1:89,64:32:153:0.418:2	0/1:0,64:33:64:1.00:2	0/1:93,73:33:167:0.440:2	0/1:0,110:33:110:1.00:2
chrX	131212512	rs5977623	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:60,49:33:109:0.450:2	0/1:47,25:33:72:0.347:2	0/1:0,15:33:15:1.00:2	./.	./.	./.	0/1:53,58:33:111:0.523:2	./.	./.	./.	./.
chrX	131212642	rs6637934	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,54:32:113:0.478:2	0/1:41,27:32:68:0.397:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	131212944	rs7051368	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	./.	./.	0/1:34,26:31:60:0.433:2	./.	./.	./.	./.
chrX	131216454	rs5977625	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,4:32:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	131518737	rs3736748	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:76,72:32:148:0.486:2	0/1:48,49:32:97:0.505:2	./.	./.	./.	./.	0/1:41,45:31:86:0.523:2	./.	./.	./.	./.
chrX	131573542	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:31:94:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	132161159	rs35397110	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,38:32:72:0.528:2	./.	./.	./.	./.
chrX	132161673	rs41304540	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,14:32:14:1.00:2	0/1:2,64:32:66:0.970:2	./.	./.	0/1:77,49:32:126:0.389:2	0/1:103,61:32:164:0.372:2	0/1:2,84:33:86:0.977:2	0/1:0,130:33:130:1.00:2	0/1:0,81:33:82:1.00:2
chrX	132351482	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,4:34:197:0.020:2	./.
chrX	132351514	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,4:30:117:0.034:2
chrX	132351703	rs35745873	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:87,65:30:153:0.428:2	./.	./.	./.
chrX	132352230	rs28455963	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:61,77:31:138:0.558:2	./.	./.	./.
chrX	132437337	rs1048369	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,5:31:10:0.500:2	0/1:0,47:31:47:1.00:2	./.	./.	0/1:54,47:31:101:0.465:2	./.	./.	./.	./.
chrX	132438872	rs1129980	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:6,10:30:16:0.625:2	0/1:2,46:31:48:0.958:2	./.	./.	0/1:51,41:30:92:0.446:2	./.	./.	./.	./.
chrX	132458273	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:81,4:33:85:0.047:2	./.	./.	./.	./.	./.	./.	./.
chrX	132888001	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,4:34:58:0.069:2	./.	./.
chrX	133379551	rs2428577	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,27:32:27:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,3:25:3:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,22:31:22:1.00:2	0/1:0,17:31:17:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,10:32:10:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,16:31:16:1.00:2
chrX	133609273	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,4:31:113:0.035:2	./.	./.	./.
chrX	133700623	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,4:32:46:0.087:2	./.	./.	./.	./.	./.	./.
chrX	133963268	rs45447592	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,138:31:141:0.979:2	./.	./.	./.	./.	./.	./.	./.
chrX	134125475	rs11739	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:85,93:29:178:0.522:2	0/1:56,54:30:110:0.491:2	0/1:24,16:30:40:0.400:2	./.	./.	0/1:1,150:29:151:0.993:2	0/1:94,97:30:192:0.508:2	0/1:0,192:30:192:1.00:2	./.	./.	0/1:1,119:29:120:0.992:2
chrX	134125835	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:75,35:33:110:0.318:2	./.	./.	./.	./.
chrX	134126394	rs2498769	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:51,48:32:99:0.485:2	0/1:20,31:32:51:0.608:2	0/1:5,6:28:11:0.545:2	./.	./.	0/1:1,41:31:42:0.976:2	./.	0/1:60,65:32:125:0.520:2	./.	./.	0/1:2,83:31:85:0.976:2
chrX	134156271	rs368528922	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:113,4:31:117:0.034:2	./.	./.	./.	./.	./.	./.	./.
chrX	134185960	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:192,4:34:196:0.020:2	./.	./.	./.
chrX	134185997	rs2498776	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:2,112:31:114:0.982:2	0/1:0,37:30:38:1.00:2	0/1:3,166:30:169:0.982:2	./.	0/1:0,156:31:156:1.00:2	./.	0/1:2,182:31:185:0.989:2	0/1:0,112:31:113:1.00:2	0/1:93,70:31:164:0.429:2	0/1:0,132:31:133:1.00:2
chrX	134303554	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:34:194:0.021:2	./.	./.	./.	./.
chrX	134421107	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,6:31:89:0.067:2	./.	./.	./.	./.	./.
chrX	134421168	rs1129093	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,68:32:155:0.439:2	0/1:48,43:32:91:0.473:2	0/1:1,21:31:22:0.955:2	0/1:0,75:31:75:1.00:2	0/1:2,51:31:53:0.962:2	./.	0/1:75,64:32:139:0.460:2	0/1:84,81:32:165:0.491:2	0/1:2,83:32:85:0.976:2	0/1:77,67:32:144:0.465:2	./.
chrX	134481722	rs146450026	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,4:31:8:0.500:2	./.	0/1:1,22:32:23:0.957:2	./.	./.	./.	./.	./.	./.
chrX	134713855	rs2298301	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:112,76:31:188:0.404:2	0/1:86,68:31:154:0.442:2	0/1:12,26:30:38:0.684:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	134930703	.	T	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant8-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:32:2:1.00:2	0/1:1,4:26:5:0.800:2	./.	./.	./.	./.	0/1:1,16:30:17:0.941:2	0/1:1,4:31:5:0.800:2	0/1:175,6:32:181:0.033:2	0/1:2,12:30:15:0.857:2
chrX	134947990	rs201884238	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,4:32:128:0.031:2	./.	./.
chrX	134947993	rs376759808	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,4:31:124:0.032:2	./.	./.
chrX	134948023	rs149766742	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:120,6:32:126:0.048:2	0/1:171,4:32:177:0.023:2	./.	./.	./.
chrX	134948034	rs2034920	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,135:29:136:0.993:2	0/1:0,80:30:80:1.00:2	0/1:0,6:30:6:1.00:2	0/1:1,98:30:99:0.990:2	0/1:0,60:29:60:1.00:2	./.	0/1:38,82:30:120:0.683:2	0/1:0,170:29:170:1.00:2	0/1:0,114:30:114:1.00:2	0/1:64,90:29:154:0.584:2	0/1:0,112:30:112:1.00:2
chrX	134948078	rs141611240	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,7:32:91:0.077:2	./.	./.	./.	./.
chrX	134965218	.	T	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:0,4:34:4:1.00:2	./.	./.	./.	0/1:2,6:28:8:0.750:2	./.	./.	0/1:0,12:30:12:1.00:2	0/1:3,9:32:12:0.750:2	0/1:193,5:30:198:0.025:2	0/1:1,15:30:16:0.938:2
chrX	134978425	rs5930805	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:191,4:32:195:0.021:2	./.	./.	./.	./.	0/1:0,122:32:122:1.00:2	0/1:104,80:32:185:0.435:2	./.	./.	0/1:103,95:32:198:0.480:2	./.
chrX	134983743	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,5:32:175:0.029:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	134986700	rs12014884	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,159:29:163:0.975:2	0/1:89,106:29:195:0.544:2	./.	./.	0/1:105,89:29:194:0.459:2	./.
chrX	134991047	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:34:166:0.024:2	./.
chrX	134991078	rs5974570	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,149:32:151:0.987:2	0/1:105,88:33:193:0.456:2	./.	./.	0/1:102,95:33:197:0.482:2	./.
chrX	134993814	rs35470903	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,112:33:113:0.991:2	./.	./.
chrX	134994005	rs4829799	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,35:28:37:0.946:2	0/1:54,18:28:72:0.250:2	./.	./.	0/1:41,27:29:68:0.397:2	./.
chrX	134994054	rs4829584	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,19:31:24:0.792:2	0/1:36,14:32:50:0.280:2	./.	./.	0/1:36,27:32:63:0.429:2	./.
chrX	135067764	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:15,8:31:23:0.348:2	0/1:10,6:27:16:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	135080636	rs372580592	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:84,9:16:93:0.097:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	135092699	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:122,4:30:126:0.032:2	./.	./.	./.	./.	./.	./.	./.
chrX	135290654	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:129,4:32:133:0.030:2	./.	./.	./.	./.	./.	./.
chrX	135307049	rs5929742	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,14:34:19:0.737:2	0/1:2,11:33:13:0.846:2	./.	./.	./.	0/1:0,4:33:4:1.00:2	0/1:9,10:32:19:0.526:2	0/1:0,10:33:10:1.00:2	./.	./.	./.
chrX	135310785	rs2273221	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,30:31:84:0.357:2	0/1:39,28:30:67:0.418:2	./.	./.	./.	0/1:0,42:31:42:1.00:2	0/1:52,41:31:93:0.441:2	0/1:1,125:30:126:0.992:2	./.	./.	./.
chrX	135313034	rs1055497	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:59,56:33:115:0.487:2	0/1:39,46:33:85:0.541:2	./.	./.	./.	0/1:0,88:33:88:1.00:2	0/1:86,86:33:172:0.500:2	0/1:1,179:33:180:0.994:2	./.	./.	./.
chrX	135314249	rs55819163	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,34:30:93:0.370:2	./.	./.	./.	./.
chrX	135314332	rs186064109	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,48:31:117:0.410:2	./.	./.	./.
chrX	135328447	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:195,4:33:199:0.020:2	./.	./.	./.	./.
chrX	135426693	rs4829829	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:75,80:33:155:0.516:2	0/1:31,36:32:67:0.537:2	0/1:0,22:32:22:1.00:2	0/1:1,72:32:73:0.986:2	0/1:0,71:32:71:1.00:2	./.	0/1:69,48:33:117:0.410:2	./.	0/1:0,104:34:104:1.00:2	0/1:0,133:33:133:1.00:2	./.
chrX	135426968	rs5930931	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:31,26:31:57:0.456:2	0/1:14,16:31:30:0.533:2	0/1:0,9:31:9:1.00:2	0/1:0,28:31:28:1.00:2	0/1:1,17:30:18:0.944:2	./.	0/1:23,11:30:34:0.324:2	./.	0/1:2,20:32:22:0.909:2	0/1:0,42:32:42:1.00:2	./.
chrX	135427852	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:31:94:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	135429117	rs148424660	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,76:30:80:0.950:2	./.	./.	./.	./.	./.	./.
chrX	135429503	rs4829830	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,61:31:132:0.462:2	0/1:47,51:32:98:0.520:2	0/1:0,26:31:26:1.00:2	0/1:1,111:31:112:0.991:2	0/1:1,104:31:105:0.990:2	./.	0/1:107,88:31:195:0.451:2	./.	0/1:2,104:32:106:0.981:2	0/1:2,129:31:131:0.985:2	./.
chrX	135430044	rs877761	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:74,66:30:140:0.471:2	0/1:53,25:30:78:0.321:2	0/1:0,20:30:20:1.00:2	0/1:0,64:30:64:1.00:2	0/1:1,51:30:52:0.981:2	./.	0/1:81,58:30:139:0.417:2	./.	0/1:3,57:31:60:0.950:2	0/1:0,123:30:123:1.00:2	./.
chrX	135430483	rs912002	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:27,14:32:41:0.341:2	0/1:19,29:32:48:0.604:2	0/1:0,9:29:9:1.00:2	0/1:0,34:32:34:1.00:2	0/1:1,15:32:16:0.938:2	./.	0/1:40,16:32:56:0.286:2	./.	0/1:0,44:32:44:1.00:2	0/1:1,44:32:45:0.978:2	./.
chrX	135431236	rs5930932	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:85,83:33:168:0.494:2	0/1:48,57:32:105:0.543:2	0/1:0,16:32:16:1.00:2	0/1:1,81:33:82:0.988:2	0/1:0,41:32:41:1.00:2	./.	0/1:45,39:33:84:0.464:2	./.	0/1:0,80:34:80:1.00:2	0/1:1,165:32:167:0.994:2	./.
chrX	135431358	rs5930933	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,25:32:70:0.357:2	0/1:22,29:32:51:0.569:2	0/1:0,11:31:11:1.00:2	0/1:1,48:32:49:0.980:2	0/1:1,23:31:24:0.958:2	./.	0/1:47,21:32:68:0.309:2	./.	0/1:0,22:33:22:1.00:2	0/1:0,69:32:69:1.00:2	./.
chrX	135431804	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,3:39:141:0.021:2	./.	./.
chrX	135474420	rs1329546	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,165:32:165:1.00:2	0/1:0,117:32:117:1.00:2	0/1:0,13:31:13:1.00:2	0/1:1,113:32:114:0.991:2	0/1:0,77:32:77:1.00:2	./.	0/1:93,64:32:157:0.408:2	./.	0/1:0,99:33:99:1.00:2	0/1:5,185:32:190:0.974:2	./.
chrX	135480126	rs5974595	T	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,125:33:126:0.992:2	0/1:0,56:32:56:1.00:2	0/1:0,19:33:19:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,49:31:49:1.00:2	./.	0/1:38,42:32:80:0.525:2	./.	0/1:0,59:34:59:1.00:2	0/1:0,109:32:109:1.00:2	./.
chrX	135496398	rs5930942	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,168:31:170:0.988:2	0/1:2,97:31:99:0.980:2	0/1:0,31:31:31:1.00:2	0/1:1,89:31:90:0.989:2	0/1:1,75:31:76:0.987:2	./.	0/1:108,76:31:184:0.413:2	./.	0/1:0,120:32:120:1.00:2	0/1:0,139:31:139:1.00:2	./.
chrX	135591262	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,5:32:71:0.070:2	./.
chrX	135593629	rs3027849	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	0/1:4,14:31:18:0.778:2	./.	./.	./.	./.
chrX	135730555	rs1126535	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:35,30:32:65:0.462:2	./.	./.	0/1:52,43:32:95:0.453:2	./.
chrX	135736518	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:74,4:29:78:0.051:2	./.	./.	./.	./.	./.	./.	./.
chrX	135741392	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,4:30:40:0.100:2
chrX	135956342	rs72615484	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:140,45:27:185:0.243:2	0/1:117,42:28:159:0.264:2	0/1:33,5:26:38:0.132:2	0/1:72,92:27:164:0.561:2	./.	0/1:104,52:26:156:0.333:2	./.	0/1:120,75:27:195:0.385:2	0/1:98,92:27:190:0.484:2	./.	0/1:94,77:26:171:0.450:2
chrX	135956370	rs74509382	G	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:139,46:31:185:0.249:2	0/1:129,50:32:179:0.279:2	0/1:42,4:31:46:0.087:2	0/1:75,79:31:154:0.513:2	./.	0/1:103,39:30:142:0.275:2	./.	0/1:105,83:31:188:0.441:2	0/1:95,84:33:179:0.469:2	./.	0/1:77,59:31:136:0.434:2
chrX	135956391	rs34606958	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:128,15:30:143:0.105:2	./.	0/1:97,25:32:122:0.205:2	./.	./.	./.	./.	0/1:95,5:29:100:0.050:2
chrX	135956408	rs76876438	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:117,32:28:152:0.215:2	0/1:128,41:32:169:0.243:2	0/1:58,5:27:64:0.079:2	0/1:82,48:31:131:0.369:2	./.	0/1:74,33:33:108:0.308:2	./.	0/1:112,67:31:179:0.374:2	0/1:67,73:31:141:0.521:2	./.	0/1:72,40:30:112:0.357:2
chrX	135956411	rs35085326	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:61,5:28:66:0.076:2	0/1:132,10:30:142:0.070:2	./.	0/1:83,32:30:115:0.278:2	./.	./.	./.	./.	0/1:106,10:30:117:0.086:2
chrX	135956429	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:29:194:0.026:2	./.	./.	./.	./.
chrX	135956462	rs74463481	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:135,30:30:166:0.182:2	0/1:135,49:32:184:0.266:2	0/1:63,24:31:87:0.276:2	0/1:87,78:32:165:0.473:2	./.	0/1:89,84:32:173:0.486:2	./.	0/1:111,67:32:178:0.376:2	0/1:81,73:32:154:0.474:2	./.	0/1:85,79:31:164:0.482:2
chrX	135956467	rs35899675	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:141,31:31:172:0.180:2	0/1:132,52:31:184:0.283:2	./.	0/1:139,32:31:171:0.187:2	./.	./.	./.	0/1:107,75:31:182:0.412:2	0/1:79,72:32:151:0.477:2	./.	0/1:132,31:32:163:0.190:2
chrX	135956506	rs77794331	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:120,37:33:157:0.236:2	0/1:116,50:32:166:0.301:2	0/1:51,24:31:75:0.320:2	0/1:79,100:33:179:0.559:2	./.	0/1:83,84:32:167:0.503:2	./.	0/1:113,71:32:184:0.386:2	0/1:91,82:33:173:0.474:2	./.	0/1:75,100:32:175:0.571:2
chrX	135956574	.	C	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:170,5:26:176:0.029:2	./.	0/1:28,3:31:31:0.097:2	0/1:112,7:24:119:0.059:2	./.	./.	./.	./.	./.	./.	0/1:118,9:24:129:0.071:2
chrX	135956575	rs78646793	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:159,20:33:179:0.112:2	0/1:77,11:33:88:0.125:2	./.	0/1:83,38:32:121:0.314:2	./.	0/1:105,49:30:154:0.318:2	./.	0/1:142,25:32:167:0.150:2	0/1:101,33:32:134:0.246:2	./.	0/1:82,46:32:129:0.359:2
chrX	135956586	rs150079822	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:139,13:27:152:0.086:2	0/1:73,8:26:81:0.099:2	./.	0/1:100,12:27:112:0.107:2	./.	./.	./.	0/1:137,25:27:162:0.154:2	0/1:93,23:27:116:0.198:2	./.	0/1:90,27:26:117:0.231:2
chrX	135957689	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:166,4:33:170:0.024:2	./.	./.	./.
chrX	135958696	rs112800567	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:174,5:30:179:0.028:2	./.	0/1:47,3:33:50:0.060:2	0/1:143,32:32:175:0.183:2	./.	0/1:171,10:33:181:0.055:2	./.	0/1:154,26:32:180:0.144:2	0/1:177,7:31:184:0.038:2	./.	0/1:153,24:30:177:0.136:2
chrX	135958704	rs112089728	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:175,6:25:181:0.033:2	0/1:186,5:32:191:0.026:2	./.	0/1:130,44:32:174:0.253:2	./.	0/1:169,13:33:182:0.071:2	./.	0/1:154,30:33:184:0.163:2	0/1:155,18:34:173:0.104:2	./.	0/1:148,28:32:177:0.159:2
chrX	135958728	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,5:30:184:0.027:2	./.	./.	./.
chrX	135958730	rs78702689	C	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:172,12:30:184:0.065:2	0/1:148,7:32:155:0.045:2	0/1:42,4:31:46:0.087:2	0/1:80,79:31:159:0.497:2	./.	0/1:134,24:30:158:0.152:2	./.	0/1:149,35:31:184:0.190:2	0/1:113,41:31:154:0.266:2	./.	0/1:126,41:31:167:0.246:2
chrX	135960100	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,5:32:129:0.039:2	./.
chrX	135960101	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:176,4:32:180:0.022:2	./.	./.	./.	./.	./.	./.	./.
chrX	135960119	rs76812369	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:123,19:33:142:0.134:2	0/1:146,14:33:160:0.088:2	./.	0/1:140,46:32:187:0.247:2	./.	0/1:137,26:31:163:0.160:2	./.	0/1:145,45:32:190:0.237:2	0/1:125,43:32:168:0.256:2	./.	0/1:145,33:32:178:0.185:2
chrX	135960139	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:157,5:32:162:0.031:2	./.
chrX	135960230	rs199717308	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:105,11:32:116:0.095:2	0/1:78,7:32:85:0.082:2	./.	0/1:55,24:31:79:0.304:2	./.	0/1:52,9:29:62:0.148:2	./.	0/1:63,15:29:78:0.192:2	0/1:58,28:31:86:0.326:2	./.	0/1:85,17:31:102:0.167:2
chrX	135961511	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:152,4:31:156:0.026:2	./.	./.	./.	./.	./.	./.	./.
chrX	135961560	rs80321628	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:108,10:32:118:0.085:2	0/1:85,6:31:92:0.066:2	0/1:25,3:31:28:0.107:2	0/1:73,40:32:113:0.354:2	./.	0/1:80,16:31:96:0.167:2	./.	0/1:130,30:32:160:0.188:2	0/1:67,26:34:93:0.280:2	./.	0/1:77,31:32:108:0.287:2
chrX	135961587	rs2011584	G	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:58,36:31:94:0.383:2	0/1:28,39:32:67:0.582:2	0/1:0,14:31:14:1.00:2	0/1:0,64:31:64:1.00:2	0/1:2,29:30:31:0.935:2	0/1:53,10:27:64:0.159:2	./.	0/1:61,35:30:96:0.365:2	0/1:0,46:31:46:1.00:2	0/1:50,42:30:92:0.457:2	0/1:55,13:29:68:0.191:2
chrX	136112707	rs5931046	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:35,16:33:51:0.314:2	./.	0/1:6,118:32:124:0.952:2	0/1:2,150:32:152:0.987:2	0/1:148,45:32:193:0.233:2	./.	./.	0/1:129,60:33:189:0.317:2	./.
chrX	136113464	rs1190736	C	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:33:63:1.00:2	0/1:1,39:32:40:0.975:2	0/1:9,9:33:18:0.500:2	0/1:1,58:32:60:0.983:2	./.	./.	./.	0/1:84,68:32:152:0.447:2	./.	./.	./.
chrX	138067202	rs34825181	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,143:33:144:0.993:2	0/1:0,71:33:71:1.00:2	0/1:7,13:34:20:0.650:2	0/1:0,99:33:99:1.00:2	0/1:0,65:32:65:1.00:2	0/1:2,94:32:96:0.979:2	0/1:3,146:33:149:0.980:2	0/1:0,187:33:187:1.00:2	0/1:2,91:34:93:0.978:2	0/1:0,131:33:131:1.00:2	0/1:1,91:33:92:0.989:2
chrX	138633280	rs6048	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:77,78:32:155:0.503:2	0/1:37,32:32:69:0.464:2	./.	./.	./.	./.	./.	0/1:68,48:32:116:0.414:2	./.	./.	./.
chrX	138672001	rs73634052	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:58,5:34:63:0.079:2	./.	./.
chrX	138679712	rs1051619	T	A	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,145:31:146:0.993:2	0/1:0,81:31:81:1.00:2	./.	0/1:2,105:31:108:0.981:2	0/1:2,82:30:84:0.976:2	0/1:1,74:30:75:0.987:2	0/1:5,102:31:108:0.953:2	./.	./.	0/1:1,108:30:109:0.991:2	0/1:1,103:30:104:0.990:2
chrX	138774209	rs4824861	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,125:31:125:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,24:29:24:1.00:2	0/1:0,108:31:108:1.00:2	0/1:0,110:30:110:1.00:2	0/1:0,109:31:109:1.00:2	0/1:0,110:31:110:1.00:2	0/1:0,121:30:121:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,126:31:126:1.00:2	0/1:0,49:30:49:1.00:2
chrX	138880835	rs45465799	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:68,51:31:119:0.429:2	0/1:39,29:31:68:0.426:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	138880908	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,5:20:37:0.135:2	./.	./.	./.	./.	./.
chrX	138897043	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:45,3:34:48:0.063:2	./.	./.	./.	./.	./.	./.
chrX	138897058	rs138300688	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,83:33:195:0.426:2	./.	./.	./.
chrX	138897130	rs2491014	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,134:33:134:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,82:32:82:1.00:2	0/1:2,50:31:52:0.962:2	0/1:0,91:31:91:1.00:2	0/1:0,133:32:133:1.00:2	0/1:1,124:32:126:0.992:2	0/1:0,77:33:77:1.00:2	0/1:0,132:33:133:1.00:2	0/1:0,85:31:85:1.00:2
chrX	139038443	rs5955139	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:4,162:30:166:0.976:2	0/1:2,116:30:118:0.983:2	./.	0/1:3,196:31:199:0.985:2	./.	./.	0/1:114,82:31:196:0.418:2	./.
chrX	139038502	.	G	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:135,12:19:147:0.082:2	./.	./.	0/1:106,8:29:114:0.070:2	0/1:87,15:24:102:0.147:2	0/1:113,10:18:123:0.081:2	0/1:116,8:20:124:0.065:2	0/1:138,14:20:152:0.092:2	0/1:118,8:27:126:0.063:2	0/1:101,13:23:114:0.114:2	0/1:93,8:25:101:0.079:2
chrX	139038521	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:88,65:32:153:0.425:2	./.	./.	./.
chrX	139586617	rs45586631	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,95:31:196:0.485:2	./.	./.	./.
chrX	139586773	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:31:94:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	139795811	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,4:32:190:0.021:2	./.	./.	./.	./.
chrX	139865798	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,5:34:148:0.034:2	./.	./.	./.
chrX	139865837	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,4:31:104:0.038:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	140008385	rs5907732	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:3,77:32:80:0.963:2	0/1:0,38:32:38:1.00:2	0/1:4,5:32:9:0.556:2	0/1:0,40:31:40:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,50:32:50:1.00:2	0/1:37,47:32:84:0.560:2	0/1:0,40:32:40:1.00:2	0/1:50,33:32:83:0.398:2	0/1:0,57:32:57:1.00:2
chrX	140085647	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:32:193:0.021:2	./.	./.
chrX	140085725	.	G	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,8:34:24:0.333:2	./.	0/1:80,4:32:84:0.048:2	./.	./.	./.	0/1:11,102:34:113:0.903:2	0/1:142,40:34:182:0.220:2	0/1:5,87:32:93:0.946:2
chrX	140085761	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:51,3:34:54:0.056:2	./.	./.	./.	./.	./.	./.
chrX	140085787	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,38:32:131:0.290:2	0/1:60,33:32:93:0.355:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	140097652	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,5:32:172:0.029:2	./.	./.
chrX	140097654	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,5:31:170:0.029:2	./.	./.
chrX	140097730	.	G	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,11:32:39:0.282:2	./.	./.	./.	./.	./.	0/1:16,119:34:135:0.881:2	0/1:146,41:33:187:0.219:2	0/1:2,62:34:64:0.969:2
chrX	140097792	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:113,68:33:181:0.376:2	0/1:61,37:32:98:0.378:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	140271268	rs2038375	G	C	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:19,18:31:37:0.486:2	0/1:12,9:28:21:0.429:2	0/1:0,8:32:8:1.00:2	0/1:0,25:29:25:1.00:2	./.	./.	0/1:0,28:31:28:1.00:2	0/1:23,27:27:50:0.540:2	0/1:0,24:29:24:1.00:2	./.	0/1:0,14:31:14:1.00:2
chrX	140335705	rs139422549	A	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,41:31:196:0.209:2	0/1:160,11:30:171:0.064:2	./.	./.
chrX	140335706	rs200281967	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:155,41:30:196:0.209:2	0/1:164,11:33:175:0.063:2	./.	./.
chrX	140335742	rs202107750	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,21:31:120:0.175:2	./.	./.	./.	./.	0/1:145,52:32:197:0.264:2	0/1:111,82:32:194:0.425:2	./.	./.
chrX	140336540	rs3179143	T	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:70,7:30:77:0.091:2	./.	./.	./.	0/1:2,14:32:16:0.875:2	./.	./.
chrX	140671915	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,19:31:195:0.097:2	./.	./.	./.
chrX	140671916	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,19:29:195:0.097:2	./.	./.	./.
chrX	140671952	.	G	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:32:198:0.025:2	0/1:184,12:32:196:0.061:2	./.	./.
chrX	140672727	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:181,4:34:186:0.022:2	./.	./.	./.	./.	./.	./.	./.
chrX	140672762	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,14:30:190:0.074:2	./.
chrX	140677933	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,12:32:182:0.066:2	./.
chrX	140678743	rs200540319	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,19:31:198:0.096:2	./.	./.	./.
chrX	140678779	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:170,22:29:192:0.115:2	./.	./.	./.
chrX	140678780	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:169,23:31:193:0.120:2	./.	./.	./.
chrX	140785677	rs142537948	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,50:31:191:0.263:2	./.	./.	./.
chrX	140785678	rs150598024	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:144,51:27:195:0.262:2	./.	./.	./.
chrX	140785696	rs2983592	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,4:33:58:0.069:2	./.	./.	./.	./.	0/1:130,48:32:178:0.270:2	0/1:144,29:34:173:0.168:2	./.	./.
chrX	140785714	rs5953618	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,5:35:195:0.026:2	./.	0/1:173,4:35:177:0.023:2	./.	./.
chrX	140785739	rs149295712	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,12:32:69:0.174:2	./.	./.	./.	./.	./.	0/1:110,57:33:167:0.341:2	./.	./.
chrX	140785741	rs144554749	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:58,12:30:70:0.171:2	./.	./.	./.	./.	./.	0/1:115,57:30:172:0.331:2	./.	./.
chrX	140786524	rs377271221	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:123,56:28:182:0.313:2	./.
chrX	140967165	rs11095909	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,80:32:194:0.412:2	./.	./.	./.
chrX	140967195	rs11095910	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,60:30:150:0.403:2	./.	./.	./.
chrX	140969525	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:76,4:30:80:0.050:2	./.	./.	./.	./.	./.
chrX	140983064	rs176024	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,101:31:101:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,91:30:92:1.00:2	0/1:0,63:30:63:1.00:2	0/1:0,153:31:153:1.00:2	0/1:3,152:30:156:0.981:2	0/1:0,106:32:106:1.00:2	0/1:0,114:30:114:1.00:2	0/1:0,90:30:90:1.00:2
chrX	140983103	rs176025	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,20:31:20:1.00:2	0/1:0,73:31:73:1.00:2	./.	0/1:2,85:30:87:0.977:2	0/1:100,90:31:190:0.474:2	./.	./.	0/1:108,84:32:192:0.438:2	./.
chrX	140983127	rs176026	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,149:32:150:1.00:2	0/1:0,107:32:107:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,85:31:85:1.00:2	0/1:2,113:31:115:0.983:2	0/1:0,87:31:87:1.00:2	0/1:1,175:31:176:0.994:2	0/1:3,178:31:181:0.983:2	0/1:1,123:31:124:0.992:2	0/1:3,183:31:186:0.984:2	0/1:0,132:31:132:1.00:2
chrX	140985517	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,4:32:177:0.023:2	./.	./.	./.
chrX	140985551	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:32:165:0.024:2	./.	./.	./.
chrX	140985553	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,4:32:165:0.024:2	./.	./.	./.
chrX	140993264	rs176036	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:22,21:30:43:0.488:2	0/1:15,9:31:24:0.375:2	./.	./.	./.	0/1:0,26:30:26:1.00:2	0/1:13,16:31:29:0.552:2	./.	./.	./.	./.
chrX	140993642	rs176037	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,72:31:74:0.973:2	0/1:0,37:32:37:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,41:30:41:1.00:2	./.	0/1:1,26:30:27:0.963:2	0/1:41,16:30:57:0.281:2	0/1:49,20:31:69:0.290:2	./.	0/1:42,57:31:99:0.576:2	./.
chrX	140993745	rs74333625	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:106,5:31:111:0.045:2	./.	./.	./.	./.	0/1:54,6:27:61:0.100:2	./.	./.	0/1:52,4:32:56:0.071:2	./.	./.
chrX	140993751	rs77851571	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:114,6:32:120:0.050:2	./.	./.	0/1:53,4:33:57:0.070:2	./.	0/1:53,7:32:60:0.117:2	./.	./.	0/1:53,5:33:58:0.086:2	0/1:105,4:33:109:0.037:2	./.
chrX	140993755	rs74748246	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:112,8:29:120:0.067:2	./.	./.	0/1:53,5:30:58:0.086:2	./.	0/1:52,8:28:60:0.133:2	./.	./.	0/1:52,7:30:59:0.119:2	0/1:103,6:27:109:0.055:2	0/1:86,4:28:90:0.044:2
chrX	140993852	rs176038	C	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:46,12:33:58:0.207:2	0/1:13,9:32:22:0.409:2	./.	0/1:23,6:34:29:0.207:2	./.	0/1:27,5:31:32:0.156:2	./.	0/1:58,5:31:63:0.079:2	0/1:27,3:32:30:0.100:2	0/1:50,5:33:55:0.091:2	0/1:47,6:32:53:0.113:2
chrX	140993859	rs6634333	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:41,6:32:47:0.128:2	0/1:12,6:31:18:0.333:2	./.	0/1:20,3:31:23:0.130:2	./.	./.	./.	./.	./.	./.	./.
chrX	140993864	rs34836042	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,3:35:43:0.070:2	0/1:11,5:33:16:0.313:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	140993875	rs79206435	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:18,17:32:35:0.486:2	0/1:5,3:33:8:0.375:2	./.	./.	./.	./.	./.	./.	0/1:1,18:33:19:0.947:2	./.	0/1:57,4:33:61:0.066:2
chrX	140993884	rs150761200	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:63,4:33:67:0.060:2
chrX	140993885	rs74847167	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,12:34:16:0.750:2	./.	./.
chrX	140993905	rs176040	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,14:32:14:1.00:2	0/1:0,4:30:4:1.00:2	./.	./.	./.	0/1:2,9:31:11:0.818:2	0/1:41,5:29:46:0.109:2	./.	./.	./.	./.
chrX	140993912	rs12558365	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:31:2:1.00:2	0/1:0,7:26:7:1.00:2	./.	./.	0/1:7,36:31:43:0.837:2	0/1:49,63:30:113:0.563:2	./.	0/1:59,8:31:67:0.119:2	./.
chrX	140993926	rs76335605	C	G,T	.	PASS	AC=2,2;AF=0.167,0.167;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	./.	0/2:33:3:1.00:2	./.	./.	./.	./.	0/2:31:4:0.750:2	./.	0/1:33:129:0.062:2	./.	0/1:32:70:0.058:2	./.
chrX	140993932	rs141965436	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:129,6:27:135:0.044:2	./.	./.	./.
chrX	140993980	rs176042	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,18:32:111:0.162:2
chrX	140993989	rs77648555	T	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,2:34:2:1.00:2	0/1:3,18:29:21:0.857:2	0/1:0,16:31:16:1.00:2	./.	0/1:31,3:32:34:0.088:2	0/1:68,41:32:109:0.376:2	./.	0/1:63,15:32:78:0.192:2	0/1:25,81:33:106:0.764:2
chrX	140993990	rs80051600	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,16:30:16:1.00:2	./.	./.	./.	./.	./.	0/1:25,81:32:106:0.764:2
chrX	140994017	rs75148863	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,17:31:18:0.944:2	./.	./.	0/1:77,10:31:87:0.115:2	./.	./.	./.
chrX	140994031	rs176044	G	C,T	.	PASS	AC=2,1;AF=0.222,0.111;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant5	GT:BQ:DP:FA:SS	0:.,.:0:0.00:0	./.	./.	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/2:31:34:0.118:2	./.	0/1:34:4:1.00:2	./.	0/1:33:125:0.040:2
chrX	140994037	rs176045	C	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:5,6:27:11:0.545:2	0/1:2,5:30:7:0.714:2	0/1:0,6:29:6:1.00:2	0/1:1,35:29:36:0.972:2	./.	0/1:6,4:30:10:0.400:2	0/1:32,4:28:36:0.111:2	0/1:47,23:30:72:0.329:2	./.	0/1:59,31:30:90:0.344:2	0/1:7,114:30:121:0.942:2
chrX	140994085	rs176046	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:22,16:32:38:0.421:2	0/1:11,17:31:28:0.607:2	0/1:2,3:32:5:0.600:2	./.	./.	0/1:6,21:31:27:0.778:2	0/1:22,10:34:32:0.313:2	./.	./.	./.	./.
chrX	140994094	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,17:27:64:0.266:2
chrX	140994095	rs112191471	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,4:33:8:0.500:2	./.	./.
chrX	140994096	rs78546154	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,3:32:51:0.060:2	./.	./.	./.	./.	0/1:26,3:30:29:0.103:2	./.	./.	0/1:4,4:33:8:0.500:2	./.	./.
chrX	140994115	rs138660605	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,6:32:8:0.750:2	./.	0/1:43,10:28:53:0.189:2
chrX	140994122	rs1055491	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,9:32:10:0.900:2	./.	./.
chrX	140994123	rs77196611	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:63,7:29:70:0.100:2	0/1:35,6:29:41:0.146:2	./.	./.	./.	0/1:29,3:32:32:0.094:2	./.	./.	./.	0/1:65,4:30:69:0.058:2	0/1:36,4:29:40:0.100:2
chrX	140994136	rs78484597	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:70,7:32:77:0.091:2	0/1:38,6:32:44:0.136:2	./.	./.	./.	0/1:32,4:33:36:0.111:2	./.	0/1:38,6:32:44:0.136:2	./.	0/1:67,5:32:72:0.069:2	0/1:29,5:31:34:0.147:2
chrX	140994171	rs176047	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,80:33:82:0.976:2	0/1:0,42:32:42:1.00:2	0/1:1,8:31:9:0.889:2	0/1:0,32:33:32:1.00:2	0/1:2,9:33:11:0.818:2	0/1:3,28:32:31:0.903:2	0/1:15,9:33:24:0.375:2	0/1:36,10:32:46:0.217:2	./.	0/1:44,34:33:78:0.436:2	0/1:1,43:33:44:0.977:2
chrX	140994200	rs57227275	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,3:32:37:0.081:2	./.	0/1:43,4:32:47:0.085:2	./.	./.	./.
chrX	140994280	rs4824884	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant7	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,16:32:18:0.889:2	./.	./.	./.	0/1:1,45:33:46:0.978:2	./.	0/1:0,58:29:58:1.00:2
chrX	140994410	rs60282368	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:51,3:34:54:0.056:2	./.	./.
chrX	140994462	rs56675069	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,5:31:41:0.122:2	./.	./.	./.	0/1:72,8:33:80:0.100:2	./.	./.
chrX	140994591	rs176048	C	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:24,25:33:49:0.510:2	0/1:25,18:31:43:0.419:2	0/1:0,2:35:2:1.00:2	./.	./.	0/1:0,15:32:15:1.00:2	0/1:10,14:31:25:0.583:2	./.	./.	./.	./.
chrX	140994867	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:30,3:31:33:0.091:2	./.	./.	./.	./.	0/1:39,3:33:42:0.071:2	./.	0/1:37,4:32:41:0.098:2	0/1:51,3:33:54:0.056:2	./.
chrX	140995006	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:39,3:35:42:0.071:2	./.	./.	./.	./.
chrX	140995712	rs41299076	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,20:31:20:1.00:2	./.	./.	./.	./.	./.	./.	./.
chrX	140995930	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,4:31:28:0.143:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	140995937	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,4:31:24:0.167:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	140995940	rs141478517	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,4:32:24:0.167:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	140996364	rs12845617	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:43,35:32:78:0.449:2	0/1:13,24:32:37:0.649:2	0/1:8,4:33:12:0.333:2	./.	./.	./.	./.	0/1:31,26:32:57:0.456:2	./.	0/1:40,23:31:63:0.365:2	./.
chrX	141290723	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:133,4:33:137:0.029:2	./.
chrX	141290865	rs3765272	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:50,43:32:93:0.462:2	0/1:17,24:31:41:0.585:2	0/1:0,5:32:5:1.00:2	0/1:1,32:31:33:0.970:2	0/1:0,28:32:28:1.00:2	0/1:0,26:31:27:1.00:2	0/1:33,21:31:54:0.389:2	0/1:62,41:32:103:0.398:2	0/1:0,37:32:37:1.00:2	0/1:39,24:31:63:0.381:2	./.
chrX	141291764	rs372614328	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,28:31:82:0.341:2	0/1:23,17:31:40:0.425:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	142596722	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,18:32:130:0.138:2	./.
chrX	142596941	rs6654212	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,35:31:66:0.530:2	0/1:26,27:31:53:0.509:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	142795209	rs151118915	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:109,8:28:117:0.068:2	0/1:95,4:31:99:0.040:2	./.	./.	./.	./.	./.	./.	./.	0/1:127,4:31:131:0.031:2	./.
chrX	142795212	rs142665173	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:103,8:31:112:0.072:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:128,4:32:132:0.030:2	./.
chrX	142795225	rs3859898	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:75,37:30:114:0.330:2	0/1:51,38:30:89:0.427:2	./.	./.	0/1:5,38:31:43:0.884:2	./.	./.	0/1:65,65:30:130:0.500:2	./.	./.	0/1:4,59:31:63:0.937:2
chrX	142795264	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:32:145:0.028:2	0/1:88,4:33:92:0.043:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	142795287	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:138,5:27:143:0.035:2	./.
chrX	142967468	rs237520	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,75:32:136:0.551:2	0/1:41,34:32:75:0.453:2	0/1:0,17:32:17:1.00:2	0/1:0,73:33:73:1.00:2	0/1:1,41:32:42:0.976:2	0/1:1,59:32:60:0.983:2	./.	0/1:3,107:32:110:0.973:2	0/1:2,70:32:72:0.972:2	0/1:67,52:33:119:0.437:2	0/1:0,80:32:80:1.00:2
chrX	142967499	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:162,4:33:166:0.024:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:136,4:33:140:0.029:2	./.
chrX	142967543	.	A	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:189,5:32:194:0.026:2	./.	./.	0/1:121,4:32:125:0.032:2	0/1:121,5:32:126:0.040:2	./.	./.	./.	./.	0/1:193,4:32:197:0.020:2	./.
chrX	142967582	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:184,6:27:190:0.032:2	./.	./.	./.	./.	./.	./.
chrX	142967990	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,4:32:144:0.028:2	./.	./.	./.	./.
chrX	142968082	rs237521	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:69,58:32:127:0.457:2	0/1:48,37:31:85:0.435:2	0/1:0,12:32:12:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,68:32:68:1.00:2	./.	0/1:2,134:32:136:0.985:2	0/1:3,70:32:73:0.959:2	0/1:90,53:32:143:0.371:2	0/1:1,105:32:106:0.991:2
chrX	144337219	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,5:32:102:0.049:2	./.	./.	./.	./.	./.	0/1:112,5:30:117:0.043:2	./.	./.	./.
chrX	144337222	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:97,5:33:102:0.049:2	./.	./.	./.	./.	./.	0/1:114,5:34:119:0.042:2	./.	./.	./.
chrX	144337316	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:31:194:0.026:2	./.
chrX	144904252	rs3810704	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:37,45:32:82:0.549:2	0/1:27,29:33:56:0.518:2	./.	./.	0/1:0,28:32:28:1.00:2	./.	./.	./.	0/1:0,56:33:56:1.00:2	./.	./.
chrX	144904882	rs2748588	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,57:32:57:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,58:31:58:1.00:2	0/1:0,32:33:32:1.00:2	0/1:38,19:33:57:0.333:2	0/1:0,47:32:47:1.00:2
chrX	144906370	rs45540333	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,121:33:121:1.00:2	./.	./.
chrX	144906710	rs371576032	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,8:25:32:0.250:2	./.
chrX	144910142	rs5919909	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:71,77:32:148:0.520:2	0/1:64,61:31:125:0.488:2	0/1:0,25:31:25:1.00:2	0/1:3,105:31:108:0.972:2	./.	0/1:0,88:31:88:1.00:2	0/1:1,193:31:194:0.995:2	0/1:0,187:31:187:1.00:2	./.	0/1:97,96:31:193:0.497:2	0/1:0,102:31:102:1.00:2
chrX	144910412	rs190386600	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,93:32:93:1.00:2	./.	./.
chrX	144910925	rs116637437	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,62:31:63:0.984:2	./.	0/1:62,40:31:102:0.392:2	./.	./.	0/1:1,61:31:62:0.984:2
chrX	144910936	rs2474402	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,81:32:81:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,66:31:66:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,108:32:109:1.00:2	0/1:0,105:32:105:1.00:2	0/1:0,71:32:71:1.00:2	0/1:35,46:31:81:0.568:2	0/1:0,58:32:58:1.00:2
chrX	145076302	rs5965660	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,71:32:73:0.973:2	./.	0/1:1,149:32:150:0.993:2	./.	0/1:80,68:32:149:0.459:2	./.
chrX	145891436	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:100,89:32:189:0.471:2	./.	./.
chrX	145896115	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,79:31:190:0.416:2	./.	./.
chrX	146295088	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:186,5:29:191:0.026:2	./.	./.	./.	./.	./.	./.
chrX	146307366	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:177,21:31:198:0.106:2	./.
chrX	146360769	rs374152740	C	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,8:32:11:0.727:2	0/1:191,6:32:197:0.030:2	./.	./.	0/1:187,5:30:192:0.026:2	./.
chrX	146360813	rs148964961	A	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:185,11:33:196:0.056:2	0/1:153,8:33:161:0.050:2	0/1:55,6:31:61:0.098:2	./.	0/1:146,6:33:152:0.039:2	0/1:3,6:32:9:0.667:2	0/1:186,14:31:200:0.070:2	0/1:191,8:34:199:0.040:2	0/1:135,5:33:140:0.036:2	0/1:190,7:33:197:0.036:2	0/1:153,10:32:163:0.061:2
chrX	147010263	rs201580891	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:122,33:18:155:0.213:2	./.	./.	0/1:73,23:17:96:0.240:2	0/1:76,22:15:98:0.224:2	0/1:87,32:14:120:0.269:2	0/1:125,27:15:153:0.178:2	0/1:143,25:15:168:0.149:2	0/1:104,24:14:128:0.188:2	0/1:127,32:19:159:0.201:2	0/1:118,17:21:136:0.126:2
chrX	147010320	rs25707	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,74:31:74:1.00:2	./.	0/1:74,45:32:119:0.378:2	./.	./.	./.	./.
chrX	147014040	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:165,4:31:170:0.024:2
chrX	147014960	rs4824232	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:32:74:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,23:33:23:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,64:32:64:1.00:2
chrX	147088249	rs764631	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,86:30:86:1.00:2	0/1:1,49:31:50:0.980:2	0/1:1,6:30:7:0.857:2	./.	./.	./.	./.	./.	./.	0/1:35,39:30:74:0.527:2	0/1:0,38:31:39:1.00:2
chrX	148035200	rs12011040	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,110:32:110:1.00:2	./.	./.	0/1:0,113:33:113:1.00:2	0/1:179,5:33:184:0.027:2	./.
chrX	148048494	rs149653283	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,91:34:91:1.00:2	./.	./.
chrX	148072778	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:29:69:0.058:2	./.	./.	./.	./.	./.
chrX	148072839	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,4:33:193:0.021:2	./.	./.	./.	./.
chrX	148568478	rs372340411	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:94,4:33:98:0.041:2	./.	./.	./.	./.	./.	./.
chrX	148582549	rs1141608	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:42,17:33:59:0.288:2	0/1:15,8:30:23:0.348:2	0/1:2,3:32:5:0.600:2	0/1:0,21:32:21:1.00:2	0/1:0,9:32:9:1.00:2	0/1:1,21:32:22:0.955:2	0/1:1,24:32:25:0.960:2	0/1:0,36:32:36:1.00:2	./.	0/1:18,12:33:30:0.400:2	0/1:1,32:33:33:0.970:2
chrX	148627384	rs145921071	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,125:32:125:1.00:2	0/1:0,117:32:117:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,127:32:127:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,108:32:108:1.00:2	0/1:0,134:33:136:1.00:2	0/1:2,139:33:141:0.986:2	0/1:0,117:33:117:1.00:2	0/1:1,119:33:120:0.992:2	0/1:1,108:33:109:0.991:2
chrX	148628490	.	A	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,159:32:161:0.988:2	0/1:0,85:32:85:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,82:32:82:1.00:2	0/1:0,46:32:46:1.00:2	0/1:0,61:31:61:1.00:2	0/1:0,116:32:116:1.00:2	0/1:2,136:31:138:0.986:2	0/1:0,81:33:81:1.00:2	0/1:1,121:32:123:0.992:2	0/1:0,71:31:71:1.00:2
chrX	148664322	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:104,7:32:111:0.063:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	148664353	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:147,46:32:193:0.238:2	./.
chrX	148674764	rs200049366	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,30:31:197:0.152:2	./.	./.	./.
chrX	148675915	.	G	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:109,84:32:193:0.435:2	0/1:111,88:32:199:0.442:2	0/1:81,44:31:125:0.352:2	0/1:113,84:31:197:0.426:2	./.	0/1:119,80:30:199:0.402:2	0/1:114,81:31:196:0.415:2	0/1:163,36:32:199:0.181:2	./.	0/1:103,92:32:195:0.472:2	./.
chrX	148676281	.	A	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:128,14:15:142:0.099:2	./.	./.	0/1:149,14:14:163:0.086:2	./.	./.	./.	./.	./.	0/1:140,14:14:154:0.091:2	0/1:131,18:13:149:0.121:2
chrX	148676307	rs200199452	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:56,116:31:172:0.674:2	0/1:43,143:31:186:0.769:2	0/1:36,31:32:67:0.463:2	0/1:106,75:32:181:0.414:2	./.	0/1:102,69:32:171:0.404:2	0/1:105,85:32:190:0.447:2	0/1:134,46:33:180:0.256:2	./.	0/1:53,118:32:171:0.690:2	0/1:87,77:32:164:0.470:2
chrX	148679733	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:153,46:32:199:0.231:2	./.	./.	./.
chrX	148681229	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:143,47:31:190:0.247:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	148681299	rs200553350	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,176:33:176:1.00:2	0/1:0,189:33:189:1.00:2	0/1:0,175:32:175:1.00:2	0/1:1,188:33:189:0.995:2	0/1:3,191:33:194:0.985:2	0/1:1,188:32:189:0.995:2	0/1:3,185:33:188:0.984:2	0/1:58,134:33:192:0.698:2	0/1:111,81:33:192:0.422:2	0/1:1,182:33:183:0.995:2	0/1:3,177:33:180:0.983:2
chrX	148682039	rs199726714	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,182:31:182:1.00:2	0/1:0,141:30:141:1.00:2	0/1:0,31:30:31:1.00:2	0/1:1,190:30:191:0.995:2	0/1:2,188:30:190:0.989:2	0/1:0,173:30:173:1.00:2	0/1:0,178:31:178:1.00:2	0/1:43,139:30:182:0.764:2	0/1:81,79:31:160:0.494:2	0/1:0,179:31:179:1.00:2	0/1:0,150:31:150:1.00:2
chrX	148797327	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,4:32:185:0.022:2	./.	./.	./.
chrX	148797348	rs2233048	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,139:32:139:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,21:32:21:1.00:2	0/1:1,88:32:89:0.989:2	0/1:2,66:32:69:0.971:2	0/1:3,75:31:78:0.962:2	0/1:3,143:32:146:0.979:2	0/1:81,106:32:187:0.567:2	./.	0/1:73,82:32:155:0.529:2	0/1:0,100:32:100:1.00:2
chrX	148798223	rs2233050	T	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,69:31:69:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,25:33:25:1.00:2	0/1:0,29:32:29:1.00:2	0/1:1,31:31:32:0.969:2	0/1:0,54:32:54:1.00:2	0/1:24,38:32:62:0.613:2	./.	0/1:30,40:32:70:0.571:2	0/1:0,28:31:28:1.00:2
chrX	148798267	rs199957685	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant2-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:66,7:23:73:0.096:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:62,9:21:72:0.127:2	0/1:25,6:21:31:0.194:2
chrX	148850662	rs200063215	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,187:31:187:1.00:2	0/1:0,132:30:132:1.00:2	0/1:0,41:30:41:1.00:2	0/1:0,118:31:118:1.00:2	0/1:0,131:30:131:1.00:2	0/1:0,128:30:128:1.00:2	0/1:1,191:31:193:0.995:2	0/1:46,147:31:193:0.762:2	0/1:63,71:32:134:0.530:2	0/1:0,175:31:175:1.00:2	0/1:0,125:31:125:1.00:2
chrX	148851402	.	A	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,178:33:179:0.994:2	0/1:1,184:32:187:0.995:2	0/1:0,175:32:175:1.00:2	0/1:2,184:32:186:0.989:2	0/1:1,191:32:192:0.995:2	0/1:1,189:32:190:0.995:2	0/1:1,184:33:185:0.995:2	0/1:61,128:33:189:0.677:2	0/1:102,91:33:193:0.472:2	0/1:0,185:33:185:1.00:2	0/1:1,188:33:189:0.995:2
chrX	148851472	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:128,36:31:164:0.220:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	148852967	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,49:33:194:0.253:2	./.	./.	./.
chrX	148856393	rs201561571	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:48,133:31:181:0.735:2	0/1:62,127:32:189:0.672:2	0/1:45,21:31:66:0.318:2	0/1:90,91:32:181:0.503:2	./.	0/1:107,82:32:189:0.434:2	0/1:106,87:32:193:0.451:2	0/1:160,33:33:193:0.171:2	./.	0/1:51,137:32:188:0.729:2	0/1:90,78:32:169:0.464:2
chrX	148856785	rs201098724	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:97,85:32:182:0.467:2	0/1:94,97:32:191:0.508:2	0/1:74,61:31:135:0.452:2	0/1:110,81:32:191:0.424:2	./.	0/1:121,74:31:195:0.379:2	0/1:124,74:32:199:0.374:2	0/1:165,33:31:199:0.167:2	./.	0/1:110,84:32:194:0.433:2	./.
chrX	148857936	rs200471336	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:140,40:31:180:0.222:2	./.	./.	./.
chrX	148868355	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:148,42:31:191:0.221:2	./.
chrX	148868908	.	C	G	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,175:33:175:1.00:2	0/1:0,182:33:182:1.00:2	0/1:0,84:33:84:1.00:2	0/1:0,186:33:186:1.00:2	0/1:0,184:32:184:1.00:2	0/1:3,181:33:184:0.984:2	0/1:0,185:34:185:1.00:2	0/1:104,88:32:192:0.458:2	./.	0/1:57,132:33:189:0.698:2	0/1:2,182:32:184:0.989:2
chrX	148869330	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,115:30:115:1.00:2	0/1:0,91:31:91:1.00:2	0/1:0,15:30:15:1.00:2	0/1:0,85:30:85:1.00:2	0/1:0,66:29:66:1.00:2	0/1:0,67:29:67:1.00:2	0/1:0,77:30:77:1.00:2	0/1:73,49:30:122:0.402:2	0/1:0,89:31:89:1.00:2	0/1:0,97:31:97:1.00:2	0/1:0,67:31:67:1.00:2
chrX	149013727	rs5983916	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,152:29:152:1.00:2	0/1:0,82:29:82:1.00:2	0/1:0,17:29:17:1.00:2	0/1:0,62:29:62:1.00:2	0/1:0,74:29:74:1.00:2	0/1:0,90:29:90:1.00:2	0/1:0,171:29:171:1.00:2	0/1:0,172:29:172:1.00:2	0/1:0,87:30:87:1.00:2	0/1:0,143:29:143:1.00:2	0/1:0,99:28:99:1.00:2
chrX	149100904	rs151337313	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:180,14:29:194:0.072:2	0/1:171,21:30:192:0.109:2	0/1:113,6:29:119:0.050:2	0/1:181,15:31:196:0.077:2	0/1:182,6:31:188:0.032:2	0/1:184,9:29:193:0.047:2	0/1:186,12:32:198:0.061:2	0/1:187,10:31:197:0.051:2	0/1:175,20:31:195:0.103:2	0/1:182,16:30:198:0.081:2	0/1:173,15:30:188:0.080:2
chrX	149101934	rs140921811	A	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:144,37:31:181:0.204:2	0/1:157,36:31:193:0.187:2	0/1:60,17:32:77:0.221:2	0/1:150,41:30:191:0.215:2	0/1:144,43:31:187:0.230:2	0/1:155,36:31:191:0.188:2	0/1:166,29:31:196:0.149:2	0/1:168,26:31:194:0.134:2	0/1:134,33:31:167:0.198:2	0/1:156,35:31:191:0.183:2	0/1:154,34:30:188:0.181:2
chrX	149102006	rs626113	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:151,7:33:158:0.044:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	149638920	rs41313406	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,32:31:32:1.00:2	0/1:40,22:31:62:0.355:2	./.
chrX	149642019	rs2073043	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:53,62:33:117:0.539:2	0/1:38,44:32:82:0.537:2	./.	./.	./.	./.	./.	./.	0/1:0,50:33:50:1.00:2	0/1:59,31:33:92:0.344:2	./.
chrX	149671615	rs186596666	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:56,80:31:137:0.588:2	./.	./.	./.	./.
chrX	149671656	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,4:33:158:0.025:2	./.
chrX	149900067	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,45:32:100:0.450:2	./.	./.	./.	./.
chrX	149931106	rs16995747	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,114:29:114:1.00:2	0/1:0,99:30:99:1.00:2	0/1:9,21:30:30:0.700:2	0/1:1,80:30:81:0.988:2	0/1:0,66:30:66:1.00:2	0/1:0,81:28:81:1.00:2	0/1:0,130:30:130:1.00:2	0/1:0,174:29:174:1.00:2	0/1:1,72:31:74:0.986:2	0/1:0,113:30:114:1.00:2	0/1:1,61:30:62:0.984:2
chrX	149999696	rs17319111	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,17:32:24:0.708:2	0/1:10,7:33:17:0.412:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	150349533	rs62620754	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant6-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:5,6:31:11:0.545:2	./.	./.	0/1:3,54:31:57:0.947:2	./.	0/1:0,139:31:139:1.00:2	./.	./.	./.
chrX	150349649	rs561077	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:93,86:29:179:0.480:2	0/1:61,43:30:104:0.413:2	0/1:25,6:30:31:0.194:2	./.	0/1:6,143:29:149:0.960:2	0/1:4,100:29:104:0.962:2	0/1:117,77:32:194:0.397:2	0/1:1,181:30:182:0.995:2	./.	./.	./.
chrX	150349760	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:49,4:34:53:0.075:2	./.	./.	./.	./.	./.	./.	./.
chrX	150349871	rs13440581	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:16,18:32:34:0.529:2	0/1:7,17:30:24:0.708:2	./.	0/1:0,22:31:22:1.00:2	./.	./.	0/1:0,35:31:35:1.00:2	./.	0/1:1,20:31:22:0.952:2	0/1:0,24:32:24:1.00:2	0/1:1,14:33:15:0.933:2
chrX	150565330	rs176451	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:23,13:28:36:0.361:2	./.	./.	0/1:0,25:29:25:1.00:2	0/1:2,10:27:12:0.833:2	./.	0/1:1,38:29:39:0.974:2	./.	./.	0/1:18,24:28:42:0.571:2	0/1:0,11:28:11:1.00:2
chrX	150773199	rs375505833	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,76:31:76:1.00:2	./.	./.	./.	./.	./.
chrX	150791434	rs201964546	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:139,23:17:162:0.142:2	./.	./.	./.	./.	0/1:157,11:17:168:0.065:2	./.	./.	./.	0/1:158,24:16:182:0.132:2	0/1:157,19:16:176:0.108:2
chrX	150791439	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,13:15:116:0.112:2	./.	./.	./.	./.	0/1:136,16:14:153:0.105:2	./.	./.	./.	0/1:130,22:15:152:0.145:2	0/1:132,16:20:148:0.108:2
chrX	150791503	rs5924977	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,9:32:21:0.429:2	./.	./.	./.	0/1:123,63:32:186:0.339:2	./.	./.	./.	./.
chrX	150791512	rs5924978	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,8:30:20:0.400:2	./.	./.	./.	0/1:128,61:30:189:0.323:2	./.	./.	./.	./.
chrX	150793979	rs143131546	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,165:32:167:0.988:2	./.	./.	./.	./.	./.
chrX	150794011	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:128,4:31:132:0.030:2	./.	./.	./.	./.	./.	./.
chrX	150817094	rs5924658	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:95,83:33:178:0.466:2	0/1:61,69:33:130:0.531:2	0/1:18,11:33:29:0.379:2	./.	./.	0/1:1,104:32:105:0.990:2	0/1:127,55:33:182:0.302:2	./.	./.	0/1:97,93:34:191:0.489:2	./.
chrX	150840185	rs6627174	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,78:33:81:0.963:2	0/1:38,46:33:84:0.548:2	./.	./.	./.
chrX	150840916	rs41299110	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:94,85:30:180:0.475:2	0/1:65,62:31:127:0.488:2	./.	./.	./.	./.	./.	0/1:85,106:30:191:0.555:2	0/1:0,151:31:151:1.00:2	./.	./.
chrX	150867321	rs5925008	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:29,36:31:65:0.554:2	0/1:14,30:31:44:0.682:2	0/1:0,6:30:6:1.00:2	0/1:0,37:30:37:1.00:2	./.	./.	0/1:36,36:32:72:0.500:2	./.	./.	0/1:0,53:32:53:1.00:2	0/1:1,34:32:35:0.971:2
chrX	150869267	rs4323608	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:32:80:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,9:33:9:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,43:31:43:1.00:2	0/1:0,40:33:40:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,103:32:103:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,66:31:66:1.00:2	0/1:2,17:31:19:0.895:2
chrX	150884620	rs3810715	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:68,46:30:114:0.404:2	0/1:46,41:31:88:0.471:2	./.	./.	./.	./.	./.	0/1:3,184:30:187:0.984:2	./.	./.	./.
chrX	150909307	rs35350051	G	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,6:32:13:0.462:2	0/1:5,42:32:47:0.894:2	./.	./.	./.	./.	./.	./.	./.
chrX	150912962	rs714147	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,37:32:37:1.00:2	./.	./.	./.	./.	./.	./.
chrX	151092220	rs1047248	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:56,55:28:112:0.495:2	0/1:42,28:28:70:0.400:2	0/1:0,18:28:18:1.00:2	./.	0/1:1,52:28:53:0.981:2	0/1:0,77:30:77:1.00:2	0/1:75,65:29:140:0.464:2	0/1:86,85:29:171:0.497:2	./.	0/1:74,63:30:137:0.460:2	0/1:0,59:29:59:1.00:2
chrX	151092653	rs1047251	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:72,90:30:162:0.556:2	0/1:44,46:30:90:0.511:2	0/1:0,18:30:18:1.00:2	./.	0/1:0,53:30:53:1.00:2	0/1:1,93:30:95:0.989:2	0/1:57,79:30:136:0.581:2	0/1:71,78:31:149:0.523:2	./.	0/1:58,65:31:123:0.528:2	0/1:0,92:30:92:1.00:2
chrX	151123190	rs1061417	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant2	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,14:16:77:0.189:2	0/1:40,10:17:50:0.200:2
chrX	151123384	rs45439991	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,7:31:17:0.412:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	151129822	rs2256882	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,6:32:16:0.375:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	151138179	rs1139916	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:94,71:29:165:0.430:2	0/1:43,38:30:81:0.469:2	0/1:10,19:30:29:0.655:2	0/1:0,80:30:80:1.00:2	0/1:0,80:30:80:1.00:2	./.	0/1:0,173:30:173:1.00:2	0/1:2,179:30:181:0.989:2	./.	0/1:82,68:30:150:0.453:2	0/1:0,58:29:58:1.00:2
chrX	151284029	rs186697412	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:72,74:31:146:0.507:2	./.	./.	./.	./.
chrX	151303393	rs210586	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:31:95:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,75:31:75:1.00:2	0/1:0,184:32:184:1.00:2	0/1:0,177:31:177:1.00:2	0/1:0,92:32:92:1.00:2	0/1:0,118:32:118:1.00:2	0/1:0,57:32:57:1.00:2
chrX	151303596	rs210585	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,39:31:39:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,4:32:4:1.00:2	0/1:0,20:31:20:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,19:31:19:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,22:33:22:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,28:32:28:1.00:2
chrX	151303657	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,4:34:51:0.078:2	./.	./.	./.
chrX	151303808	rs139926957	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,24:31:50:0.480:2	0/1:16,11:32:27:0.407:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	151304073	rs145553450	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:193,5:32:198:0.025:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	151815539	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,88:30:192:0.458:2	./.	./.	./.
chrX	151821277	rs3810651	T	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,127:31:128:0.992:2	0/1:0,73:31:73:1.00:2	0/1:8,14:31:22:0.636:2	0/1:0,85:30:85:1.00:2	./.	./.	0/1:73,66:31:139:0.475:2	./.	0/1:0,94:31:94:1.00:2	0/1:1,121:31:122:0.992:2	./.
chrX	151869339	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,28:31:54:0.519:2
chrX	151869788	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,4:33:176:0.023:2
chrX	151870296	rs182909246	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:131,5:30:136:0.037:2	./.	./.	./.	./.	./.	./.
chrX	151870327	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:185,7:26:192:0.036:2
chrX	151870629	rs79550623	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,97:31:98:0.990:2	0/1:1,69:31:70:0.986:2	0/1:12,4:30:16:0.250:2	0/1:0,47:31:47:1.00:2	./.	./.	./.	0/1:187,5:31:192:0.026:2	0/1:2,43:32:45:0.956:2	0/1:0,55:30:55:1.00:2	./.
chrX	151877046	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:61,4:28:65:0.062:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	151877125	rs200694376	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:99,87:32:187:0.468:2	0/1:93,99:32:192:0.516:2	0/1:39,4:31:43:0.093:2	0/1:80,76:32:156:0.487:2	./.	./.	./.	./.	0/1:85,63:32:148:0.426:2	0/1:108,86:32:194:0.443:2	./.
chrX	151877408	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:98,71:30:169:0.420:2	0/1:110,74:31:184:0.402:2	0/1:77,23:30:100:0.230:2	0/1:104,79:31:183:0.432:2	./.	./.	./.	./.	0/1:113,72:31:185:0.389:2	0/1:116,68:31:184:0.370:2	./.
chrX	151886087	rs201532993	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,75:32:165:0.457:2
chrX	151886335	rs202231943	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,54:31:158:0.342:2
chrX	151886336	rs200459473	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,53:31:157:0.340:2
chrX	151886343	rs201146248	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,59:31:167:0.353:2
chrX	151899913	rs2233055	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:12,17:31:29:0.586:2	./.	0/1:0,86:32:86:1.00:2	0/1:7,135:32:142:0.951:2	0/1:1,118:32:119:0.992:2	0/1:0,142:32:143:1.00:2	./.	./.	./.
chrX	151900018	rs76420840	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,5:30:87:0.057:2
chrX	151900122	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,4:31:115:0.035:2	./.	./.
chrX	151900169	rs376475815	T	A,C	.	PASS	AC=1,1;AF=0.167,0.167;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant9	GT:BQ:DP:FA:SS	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	0/2:32:131:0.031:2	./.	./.	./.	./.	0/1:31:154:0.026:2	./.	./.
chrX	151900206	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:154,4:33:158:0.025:2	./.	./.	./.	./.	./.	./.	./.
chrX	151900357	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:181,8:28:189:0.042:2	./.	./.	./.
chrX	151900373	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,6:34:192:0.031:2	./.	./.	./.
chrX	151904488	rs2515838	C	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:24,31:32:55:0.564:2	./.	0/1:2,153:31:155:0.987:2	0/1:2,163:31:165:0.988:2	0/1:0,146:32:146:1.00:2	0/1:2,185:32:187:0.989:2	./.	./.	0/1:3,139:32:142:0.979:2
chrX	151908809	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,4:34:191:0.021:2	./.	./.
chrX	151908844	rs1894359	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,173:31:176:0.989:2
chrX	151908845	rs1894360	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,175:32:177:0.989:2
chrX	151908852	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:186,6:29:193:0.031:2	./.	./.	./.	./.
chrX	151908915	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:32:186:0.022:2	./.	./.	./.	./.	./.
chrX	151909156	rs2515848	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:4,176:34:181:0.978:2	0/1:1,140:33:141:0.993:2	0/1:15,15:32:30:0.500:2	0/1:2,170:33:172:0.988:2	./.	0/1:112,4:33:116:0.034:2	./.	./.	0/1:2,123:34:125:0.984:2	0/1:1,193:33:194:0.995:2	0/1:2,189:33:191:0.990:2
chrX	151909164	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:188,6:32:194:0.031:2	./.	./.	./.	./.	0/1:163,9:34:172:0.052:2	./.	./.
chrX	151919140	rs199764571	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:124,54:30:178:0.303:2
chrX	151919147	rs200747342	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,51:31:178:0.288:2
chrX	151919148	rs202035647	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:130,51:31:181:0.282:2
chrX	151919396	rs201464439	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,98:31:192:0.510:2
chrX	151927895	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,3:30:23:0.130:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	151928073	rs199514086	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:95,73:31:170:0.435:2	0/1:115,71:31:186:0.382:2	0/1:83,19:30:102:0.186:2	0/1:117,68:31:186:0.368:2	./.	./.	./.	./.	0/1:116,74:32:190:0.389:2	0/1:120,63:31:183:0.344:2	./.
chrX	151928356	.	C	T	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant3-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,82:32:183:0.448:2	0/1:104,86:32:190:0.453:2	0/1:39,7:30:46:0.152:2	0/1:96,81:31:177:0.458:2	./.	./.	./.	./.	0/1:84,84:32:168:0.500:2	0/1:114,82:32:196:0.418:2	./.
chrX	151928435	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:172,8:29:180:0.044:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	151935535	rs34624093	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:143,4:33:147:0.027:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	151935644	rs35845634	A	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:183,5:32:188:0.027:2	./.	./.	./.
chrX	151936138	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,11:30:37:0.297:2
chrX	152018832	rs5969919	T	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,80:32:80:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,11:30:11:1.00:2	0/1:0,54:32:54:1.00:2	0/1:1,38:31:39:0.974:2	./.	0/1:59,44:32:103:0.427:2	0/1:0,72:31:72:1.00:2	0/1:0,32:32:32:1.00:2	0/1:44,38:33:82:0.463:2	0/1:0,40:30:41:1.00:2
chrX	152083006	rs6526140	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:26,19:33:45:0.422:2	0/1:23,17:32:40:0.425:2	./.	0/1:0,25:33:25:1.00:2	./.	0/1:1,16:32:17:0.941:2	./.	./.	0/1:0,25:33:25:1.00:2	0/1:33,18:33:51:0.353:2	./.
chrX	152083012	rs6526141	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:29,19:33:48:0.396:2	0/1:25,17:32:42:0.405:2	./.	0/1:0,25:33:25:1.00:2	./.	0/1:1,16:32:17:0.941:2	./.	./.	0/1:0,22:32:22:1.00:2	0/1:33,17:32:50:0.340:2	./.
chrX	152083059	rs6526142	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:31,24:31:55:0.436:2	0/1:20,17:31:37:0.459:2	./.	0/1:0,24:31:24:1.00:2	./.	0/1:2,5:31:7:0.714:2	./.	./.	0/1:0,24:32:24:1.00:2	0/1:35,16:31:51:0.314:2	./.
chrX	152083089	rs6526143	T	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:24,21:31:45:0.467:2	0/1:19,11:31:30:0.367:2	./.	0/1:0,23:31:23:1.00:2	./.	0/1:2,10:31:12:0.833:2	./.	./.	0/1:0,19:32:19:1.00:2	0/1:35,13:32:48:0.271:2	./.
chrX	152090809	rs12558188	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,24:31:25:0.960:2	./.	0/1:0,26:31:26:1.00:2	./.	0/1:30,35:30:65:0.538:2	./.	0/1:25,27:33:52:0.519:2	./.
chrX	152158979	rs56350208	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:85,66:28:151:0.437:2	./.	./.	./.
chrX	152225999	rs202200283	T	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant7-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:15,9:16:24:0.375:2	./.	./.	./.	0/1:13,6:17:19:0.316:2	./.	0/1:23,11:20:34:0.324:2	0/1:19,9:21:28:0.321:2	./.	./.	0/1:6,5:18:11:0.455:2
chrX	152226011	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,8:17:44:0.182:2	./.	0/1:30,6:19:36:0.167:2	./.
chrX	152226542	rs6526155	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:24,29:29:53:0.547:2	0/1:13,15:30:28:0.536:2	./.	0/1:0,25:29:25:1.00:2	0/1:0,23:30:23:1.00:2	0/1:0,26:29:26:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,53:30:53:1.00:2	0/1:0,18:30:18:1.00:2	0/1:0,35:29:35:1.00:2	./.
chrX	152227132	rs5970424	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,40:31:41:0.976:2	0/1:0,49:31:49:1.00:2	./.	./.	./.	./.	./.
chrX	152227929	rs3830028	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:20,22:32:42:0.524:2	./.	./.	./.
chrX	152228332	rs2301182	A	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,7:30:14:0.500:2	./.	./.	./.	0/1:67,62:32:129:0.481:2	./.	0/1:0,66:32:66:1.00:2	./.	./.
chrX	152228361	rs1045069	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:64,58:33:122:0.475:2	0/1:33,28:32:61:0.459:2	./.	0/1:0,70:32:70:1.00:2	./.	./.	0/1:85,86:32:171:0.503:2	0/1:68,75:32:143:0.524:2	./.	0/1:64,50:32:114:0.439:2	./.
chrX	152228447	rs2301183	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,64:29:145:0.441:2	./.	0/1:75,57:29:132:0.432:2	./.
chrX	152228523	rs9035	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:26,33:30:59:0.559:2	0/1:14,8:32:22:0.364:2	./.	0/1:0,20:32:20:1.00:2	0/1:2,18:31:20:0.900:2	0/1:28,4:31:32:0.125:2	0/1:0,37:32:37:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,28:33:28:1.00:2	0/1:0,37:30:37:1.00:2	./.
chrX	152228548	rs2301184	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,10:27:28:0.357:2	./.	0/1:18,17:28:35:0.486:2	./.
chrX	152228684	rs45520141	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:76,33:32:109:0.303:2	0/1:50,24:32:74:0.324:2	./.	./.	./.	./.	./.	0/1:110,56:32:166:0.337:2	./.	./.	./.
chrX	152228776	rs2301185	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:26,10:29:36:0.278:2	./.	./.	./.	0/1:103,69:32:172:0.401:2	./.	0/1:2,132:32:134:0.985:2	./.	./.
chrX	152228778	rs7122	T	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:101,79:32:180:0.439:2	0/1:89,61:32:150:0.407:2	0/1:26,10:32:36:0.278:2	0/1:2,162:32:164:0.988:2	./.	./.	0/1:4,163:32:167:0.976:2	0/1:97,73:32:170:0.429:2	0/1:2,132:33:134:0.985:2	0/1:86,78:32:164:0.476:2	./.
chrX	152339375	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:5,5:30:10:0.500:2	./.	./.	0/1:0,6:29:6:1.00:2	./.	./.	0/1:12,7:28:19:0.368:2	0/1:93,7:27:100:0.070:2	./.	./.	./.
chrX	152339750	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,19:32:30:0.633:2	./.	./.
chrX	152340233	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.
chrX	152340425	rs201997719	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,17:33:17:1.00:2	./.	./.
chrX	152341690	rs375367399	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:35:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chrX	152341971	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,9:32:26:0.346:2	./.	./.
chrX	152342346	.	G	A	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:5,7:28:12:0.583:2	./.	./.	0/1:0,5:25:5:1.00:2	./.	./.	0/1:4,5:28:9:0.556:2	0/1:108,5:25:113:0.044:2	./.	0/1:70,5:25:75:0.067:2	./.
chrX	152482198	rs2233045	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,88:30:90:0.978:2	./.	./.	./.	./.	./.
chrX	152482796	rs2008144	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:55,64:31:119:0.538:2	./.	0/1:75,65:32:140:0.464:2	./.
chrX	152482917	rs2008160	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,33:30:33:1.00:2	./.	0/1:32,25:29:57:0.439:2	./.	0/1:38,28:30:67:0.424:2	./.
chrX	152483030	rs717105	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:36,25:31:61:0.410:2	./.	0/1:33,24:31:57:0.421:2	./.
chrX	152610985	rs3213466	T	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,21:30:21:1.00:2	0/1:18,29:31:47:0.617:2	0/1:31,28:30:59:0.475:2	./.	./.	./.
chrX	152613112	rs7066295	C	T	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:4,5:31:9:0.556:2	0/1:7,10:32:17:0.588:2	0/1:0,3:31:3:1.00:2	./.	./.	0/1:0,5:32:5:1.00:2	0/1:0,5:32:5:1.00:2	0/1:4,4:31:8:0.500:2	./.	./.	./.
chrX	152613540	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:32:102:0.039:2	./.	./.	./.
chrX	152613702	rs1557508	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:58,34:32:92:0.370:2	0/1:54,31:33:85:0.365:2	0/1:5,7:32:12:0.583:2	./.	./.	0/1:0,67:32:67:1.00:2	0/1:1,93:33:94:0.989:2	0/1:75,85:33:160:0.531:2	./.	0/1:69,51:33:120:0.425:2	./.
chrX	152613826	rs4828611	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:92,56:32:148:0.378:2	0/1:37,36:32:73:0.493:2	./.	./.	./.	./.	0/1:75,48:31:123:0.390:2	./.	./.	0/1:86,73:32:159:0.459:2	./.
chrX	152616741	rs8781	A	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:68,62:32:130:0.477:2	0/1:49,30:32:79:0.380:2	0/1:10,11:31:21:0.524:2	./.	./.	0/1:0,71:31:71:1.00:2	0/1:0,126:31:126:1.00:2	0/1:0,174:31:174:1.00:2	./.	0/1:84,71:31:155:0.458:2	./.
chrX	152684258	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,2:34:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	152710265	rs35639416	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,10:29:17:0.588:2	./.	./.	./.	./.
chrX	152721728	rs41311378	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:109,82:33:191:0.429:2	./.	./.	0/1:2,63:32:65:0.969:2
chrX	152735959	rs2032436	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:17,28:32:45:0.622:2	0/1:5,18:32:23:0.783:2	./.	./.	0/1:0,72:30:72:1.00:2	0/1:2,53:30:55:0.964:2	0/1:41,41:31:82:0.500:2	0/1:66,56:31:122:0.459:2	0/1:0,31:32:31:1.00:2	0/1:0,81:30:81:1.00:2	./.
chrX	152751442	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,91:31:91:1.00:2	./.	./.	./.	./.	./.
chrX	152770230	rs4833	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,44:31:45:0.978:2	0/1:51,47:31:98:0.480:2	0/1:61,55:31:116:0.474:2	0/1:0,39:33:39:1.00:2	0/1:1,59:32:60:0.983:2	./.
chrX	152770714	rs146073993	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,17:31:49:0.347:2	0/1:22,19:32:41:0.463:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	152771326	rs146322407	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,15:32:37:0.405:2	0/1:5,5:31:10:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	152771509	rs1126499	C	T	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant5-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:32:46:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,36:31:36:1.00:2	./.	./.	0/1:11,22:32:33:0.667:2	./.	./.	./.	./.
chrX	152771533	rs2070933	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,17:32:49:0.354:2	./.	./.	./.
chrX	152806822	rs149114271	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,89:31:90:0.989:2	./.	./.	./.	./.	./.	./.	./.
chrX	152806957	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:81,4:29:85:0.047:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	152807782	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,99:29:99:1.00:2	./.	./.	./.	./.	./.	./.
chrX	152815089	rs3020949	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,95:32:95:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,9:31:9:1.00:2	0/1:0,73:32:73:1.00:2	0/1:0,70:31:70:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,157:32:157:1.00:2	0/1:0,135:31:135:1.00:2	0/1:0,60:33:60:1.00:2	0/1:0,93:32:93:1.00:2	0/1:0,51:31:51:1.00:2
chrX	152815607	rs140240114	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:71,76:33:147:0.517:2	./.	./.	./.
chrX	152821832	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:96,5:25:101:0.050:2
chrX	152823728	rs2269415	G	C	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:83,68:33:152:0.450:2	0/1:53,52:33:105:0.495:2	./.	0/1:0,98:32:98:1.00:2	./.	0/1:2,131:32:133:0.985:2	0/1:0,173:33:173:1.00:2	0/1:93,89:33:182:0.489:2	./.	0/1:0,176:32:176:1.00:2	./.
chrX	152845624	rs201725641	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,5:18:22:0.227:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	152857987	rs146203325	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,4:29:83:0.048:2	./.	./.	./.
chrX	152938450	rs5987127	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,123:28:124:1.00:2	./.	./.	./.	./.	./.	./.
chrX	152956907	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:160,5:32:165:0.030:2	./.	./.	0/1:136,5:32:141:0.035:2	./.	./.	./.	./.	./.	./.	./.
chrX	152956961	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,4:31:103:0.039:2	./.	./.	./.	./.	./.	./.	./.
chrX	152958756	rs371516458	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:81,6:31:87:0.069:2	./.	./.	./.	./.	./.	./.
chrX	152959473	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:168,4:31:172:0.023:2	./.	./.	0/1:110,4:31:114:0.035:2	./.	./.	./.	./.	./.	./.	./.
chrX	152960003	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,4:29:69:0.058:2
chrX	152960228	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:30,3:32:33:0.091:2
chrX	152960535	rs2314079	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:32:178:0.022:2	./.	./.	./.	./.
chrX	152994988	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,6:31:6:1.00:2	./.	./.	./.	./.	./.	./.
chrX	153005605	rs41314153	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,61:29:61:1.00:2	./.	./.	./.	./.	./.	./.
chrX	153006137	rs76180859	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:102,15:30:117:0.128:2	0/1:62,6:31:68:0.088:2	./.	0/1:97,16:31:113:0.142:2	0/1:128,19:30:147:0.129:2	0/1:92,19:30:111:0.171:2	0/1:157,11:31:169:0.065:2	0/1:157,17:31:174:0.098:2	0/1:74,8:32:82:0.098:2	0/1:134,13:31:147:0.088:2	0/1:69,10:32:79:0.127:2
chrX	153006141	rs79383557	T	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:103,14:31:117:0.120:2	0/1:63,6:32:69:0.087:2	./.	0/1:99,15:32:114:0.132:2	0/1:124,22:31:146:0.151:2	0/1:96,16:31:112:0.143:2	0/1:157,13:33:170:0.076:2	0/1:159,17:32:176:0.097:2	0/1:78,7:32:85:0.082:2	0/1:136,14:33:151:0.093:2	0/1:65,10:32:75:0.133:2
chrX	153008434	rs79915675	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:146,5:33:151:0.033:2	./.	0/1:151,10:32:161:0.062:2	0/1:181,9:31:190:0.047:2	0/1:173,6:28:179:0.034:2	./.	0/1:181,5:31:186:0.027:2	0/1:166,12:33:178:0.067:2	./.	0/1:158,11:34:169:0.065:2
chrX	153008476	rs201774661	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:142,7:32:149:0.047:2	./.	0/1:167,17:32:184:0.092:2	0/1:155,14:29:169:0.083:2	0/1:158,16:30:174:0.092:2	0/1:135,7:31:142:0.049:2	0/1:140,8:31:148:0.054:2	0/1:149,17:33:166:0.102:2	0/1:171,10:28:181:0.055:2	0/1:158,20:31:179:0.112:2
chrX	153008483	rs78993751	G	A	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:140,7:31:147:0.048:2	./.	0/1:162,17:30:179:0.095:2	0/1:144,14:29:158:0.089:2	0/1:145,13:29:160:0.082:2	0/1:123,7:29:130:0.054:2	0/1:143,6:31:149:0.040:2	0/1:138,17:30:155:0.110:2	0/1:156,9:31:166:0.055:2	0/1:150,19:30:169:0.112:2
chrX	153008685	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,4:32:102:0.039:2	./.	0/1:63,7:26:70:0.100:2	./.
chrX	153008708	rs202125585	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:41,8:29:49:0.163:2	0/1:78,4:31:82:0.049:2	./.	./.	0/1:127,18:32:145:0.124:2	./.	0/1:79,8:29:87:0.092:2	./.
chrX	153008759	rs74315281	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:45,5:32:50:0.100:2	0/1:78,9:30:87:0.103:2	./.	0/1:126,4:31:130:0.031:2	0/1:128,22:31:150:0.147:2	./.	./.	./.
chrX	153008970	rs76637913	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:22,29:30:51:0.569:2	0/1:25,19:32:44:0.432:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	153009141	rs193922096	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	153031050	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,121:32:125:0.968:2	./.	./.
chrX	153033126	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,4:33:14:0.286:2
chrX	153033170	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,13:32:20:0.650:2	./.	./.	./.
chrX	153035798	rs2266879	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:97,88:31:186:0.476:2	0/1:63,51:32:114:0.447:2	0/1:0,37:31:37:1.00:2	0/1:2,157:31:159:0.987:2	0/1:1,193:31:194:0.995:2	0/1:0,134:31:135:1.00:2	0/1:0,190:32:190:1.00:2	0/1:109,82:31:191:0.429:2	0/1:0,139:32:139:1.00:2	0/1:0,190:31:190:1.00:2	0/1:0,88:31:88:1.00:2
chrX	153039502	rs6643791	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,10:26:10:1.00:2	0/1:0,3:26:3:1.00:2	0/1:0,3:27:3:1.00:2	0/1:0,5:27:5:1.00:2	0/1:0,3:22:3:1.00:2	0/1:0,2:27:2:1.00:2	0/1:0,3:21:3:1.00:2	./.	0/1:0,3:30:3:1.00:2	0/1:0,4:28:4:1.00:2	./.
chrX	153039980	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:90,4:29:94:0.043:2	./.	./.	./.	./.	./.
chrX	153040718	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,6:30:180:0.033:2	./.	./.	./.
chrX	153041132	rs5945162	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:79,87:32:166:0.524:2	./.	./.	./.
chrX	153041544	rs5987155	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,4:25:4:1.00:2	0/1:0,4:28:4:1.00:2	./.	0/1:0,4:29:4:1.00:2	0/1:0,6:30:6:1.00:2	./.	0/1:0,17:29:17:1.00:2	0/1:3,10:29:13:0.769:2	0/1:0,3:32:3:1.00:2	0/1:0,5:30:5:1.00:2	0/1:0,7:30:7:1.00:2
chrX	153041868	rs146832392	T	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,14:31:24:0.583:2	./.	./.	./.	0/1:89,92:32:181:0.508:2	./.	./.	0/1:80,83:32:163:0.509:2	./.
chrX	153042419	rs34966902	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:49,44:31:93:0.473:2	0/1:21,29:32:50:0.580:2	0/1:0,17:30:17:1.00:2	0/1:0,59:31:59:1.00:2	0/1:4,78:31:82:0.951:2	0/1:0,60:31:60:1.00:2	0/1:0,166:30:166:1.00:2	0/1:94,76:31:170:0.447:2	0/1:1,71:31:72:0.986:2	0/1:0,96:31:96:1.00:2	0/1:1,57:31:58:0.983:2
chrX	153042824	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:48,4:32:52:0.077:2
chrX	153048648	rs72481508	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	0/1:0,3:33:3:1.00:2	./.	0/1:0,3:32:3:1.00:2	0/1:0,3:31:3:1.00:2	0/1:0,2:30:2:1.00:2
chrX	153048657	rs2314343	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,11:33:11:1.00:2	0/1:0,5:32:5:1.00:2	./.	0/1:0,8:31:8:1.00:2	0/1:0,8:31:8:1.00:2	./.	0/1:0,8:32:8:1.00:2	0/1:20,4:34:24:0.167:2	0/1:0,2:33:2:1.00:2	0/1:0,7:29:7:1.00:2	0/1:0,3:32:3:1.00:2
chrX	153049535	rs4898444	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:10,6:32:16:0.375:2	./.	./.	./.	./.	./.	./.	0/1:10,7:28:17:0.412:2	./.	./.	./.
chrX	153055742	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,73:31:74:0.986:2	./.	./.
chrX	153062934	rs149873632	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,4:32:107:0.037:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	153146143	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:118,15:13:133:0.113:2	0/1:127,19:10:147:0.130:2	./.	0/1:118,19:12:137:0.139:2	./.
chrX	153149715	rs6643650	C	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,21:33:21:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,11:34:11:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,24:33:24:1.00:2	0/1:0,21:32:21:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,11:31:11:1.00:2
chrX	153171077	rs374487946	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,20:31:41:0.488:2	0/1:11,15:32:26:0.577:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	153171418	rs144674821	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,6:31:13:0.462:2	0/1:3,10:32:13:0.769:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	153171993	rs5201	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:70,63:32:135:0.474:2	0/1:43,38:32:81:0.469:2	./.	./.	0/1:1,120:32:121:0.992:2	./.	./.	./.	./.	0/1:69,67:32:136:0.493:2	./.
chrX	153172034	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:86,28:31:114:0.246:2	./.	./.
chrX	153175295	rs2070099	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,14:31:19:0.737:2	./.	./.	./.	./.
chrX	153176254	rs2070097	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0/1:11,9:30:20:0.450:2	0/1:10,3:30:13:0.231:2	./.	./.	0/1:0,12:29:12:1.00:2	./.	0/1:18,9:30:27:0.333:2	./.	0/1:0,15:30:15:1.00:2	./.	./.
chrX	153178929	rs149100821	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,36:30:37:0.973:2	./.	./.	./.	./.	./.	./.
chrX	153191667	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	153199447	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:45,4:33:49:0.082:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	153207037	rs78377269	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,123:31:124:0.992:2	./.	./.	./.	./.	./.	./.
chrX	153215839	rs3027875	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:30:59:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,44:31:44:1.00:2	./.	0/1:0,31:29:31:1.00:2	0/1:3,61:30:64:0.953:2	0/1:2,54:31:56:0.964:2	0/1:2,32:31:34:0.941:2	0/1:31,34:30:65:0.523:2	0/1:0,20:30:20:1.00:2
chrX	153218117	rs372010656	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:43,4:32:47:0.085:2
chrX	153219665	rs2071133	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,20:30:20:1.00:2	./.	./.	./.	./.	./.	./.
chrX	153221657	rs730106	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,88:29:89:1.00:2	./.	./.	./.	./.	./.	./.
chrX	153221775	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:125,4:34:129:0.031:2	./.	./.	./.	./.	./.	./.	./.
chrX	153222853	rs201977456	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:139,4:31:143:0.028:2	./.	./.	./.	./.	./.
chrX	153223257	rs3027888	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:60,38:32:98:0.388:2	0/1:29,26:32:55:0.473:2	./.	./.	./.	./.	0/1:111,83:32:194:0.428:2	./.	./.	./.	./.
chrX	153224061	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant3-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:93,11:14:105:0.106:2	./.	./.	./.	./.	./.	./.	./.	0/1:75,15:11:91:0.167:2	./.	./.
chrX	153247722	rs2266890	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,41:32:41:1.00:2	./.	./.	./.	./.	./.	./.
chrX	153247745	rs7350355	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,24:31:24:1.00:2	./.	./.	./.	./.	./.	./.
chrX	153247897	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,10:32:10:1.00:2
chrX	153247954	rs6571303	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,23:31:25:0.920:2	./.	./.	./.	./.	./.	./.
chrX	153278829	rs1059703	G	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,22:31:22:1.00:2	0/1:0,14:31:14:1.00:2	./.	0/1:0,13:31:13:1.00:2	0/1:0,7:31:7:1.00:2	0/1:0,10:32:11:1.00:2	0/1:1,13:30:14:0.929:2	0/1:0,31:29:31:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,8:32:8:1.00:2
chrX	153284192	rs1059702	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,135:32:135:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,18:32:18:1.00:2	0/1:0,119:32:119:1.00:2	0/1:1,79:32:80:0.988:2	0/1:0,73:32:73:1.00:2	0/1:2,157:32:159:0.987:2	0/1:1,150:32:151:0.993:2	0/1:0,100:34:100:1.00:2	0/1:1,173:32:174:0.994:2	0/1:0,92:32:92:1.00:2
chrX	153284483	rs1059701	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:31:76:1.00:2	0/1:0,40:31:40:1.00:2	0/1:0,16:31:16:1.00:2	0/1:1,45:30:46:0.978:2	0/1:0,34:31:35:1.00:2	0/1:0,49:30:49:1.00:2	0/1:0,81:30:81:1.00:2	0/1:1,90:30:91:0.989:2	0/1:0,49:31:49:1.00:2	0/1:1,94:31:95:0.989:2	0/1:0,36:31:36:1.00:2
chrX	153296023	rs376324027	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,3:32:24:0.125:2	./.	./.	./.	./.	./.
chrX	153296073	rs267608333	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,10:30:10:1.00:2	./.	./.	./.	./.	./.	./.	./.
chrX	153416346	rs77453588	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,19:31:24:0.792:2	./.	./.	./.	./.	./.	./.
chrX	153416362	rs1065422	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,8:31:13:0.615:2	./.	./.	./.	./.	./.	./.
chrX	153418456	rs75719797	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,131:29:133:0.985:2	./.	./.	./.	0/1:7,4:33:11:0.364:2	./.	./.
chrX	153418460	rs78407189	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:5,158:30:163:0.969:2	0/1:6,3:29:9:0.333:2	./.	./.	./.	./.	./.
chrX	153418468	rs72616469	G	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:50,3:33:53:0.057:2	0/1:126,64:32:191:0.337:2	0/1:172,22:32:194:0.113:2	0/1:3,21:32:24:0.875:2	0/1:162,36:33:198:0.182:2	0/1:118,56:32:174:0.322:2	./.	./.	./.
chrX	153418514	rs79866052	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:83,97:31:180:0.539:2	./.	./.	./.
chrX	153418516	rs55676401	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:80,97:32:177:0.548:2	./.	./.	./.
chrX	153418524	rs149897670	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:161,17:31:178:0.096:2	./.	./.	./.
chrX	153418535	rs145009674	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:163,18:30:181:0.099:2	./.	./.	./.
chrX	153418541	rs949431	T	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:121,60:32:181:0.331:2	0/1:116,66:31:182:0.363:2	./.	0/1:3,151:33:154:0.981:2	./.	./.	0/1:175,22:34:197:0.112:2	0/1:132,46:33:178:0.258:2	./.	0/1:131,51:31:182:0.280:2	0/1:1,181:32:182:0.995:2
chrX	153420077	rs121434621	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,8:30:29:0.276:2
chrX	153445558	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.
chrX	153453446	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:160,37:29:197:0.188:2	./.	./.	./.	./.	./.	./.
chrX	153455586	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:171,26:32:197:0.132:2	./.	./.	./.	./.	./.	./.	./.
chrX	153455590	.	A	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:169,28:32:197:0.142:2	./.	./.	./.	./.	./.	./.	./.
chrX	153455598	rs368356511	C	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:190,6:33:196:0.031:2	0/1:102,96:32:198:0.485:2	./.	0/1:186,12:32:198:0.061:2	0/1:149,43:32:192:0.224:2	./.	0/1:188,8:32:196:0.041:2	0/1:5,31:33:36:0.861:2
chrX	153455654	rs372044027	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,21:31:196:0.108:2	./.	./.	./.
chrX	153455665	rs375538821	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:176,19:31:195:0.097:2	./.	./.	./.
chrX	153455671	rs139489266	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,20:31:134:0.149:2	./.	0/1:161,37:31:198:0.187:2	0/1:142,44:31:186:0.237:2	0/1:146,50:31:196:0.255:2	./.	./.	./.	./.
chrX	153457207	rs104894914	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:110,61:30:172:0.357:2
chrX	153490564	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:158,30:30:188:0.160:2	./.	./.	./.	./.	./.	./.
chrX	153492704	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:163,29:33:192:0.151:2	./.	./.	./.	./.	./.	./.	./.
chrX	153492708	.	A	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:161,34:33:195:0.174:2	./.	./.	./.	0/1:188,6:34:194:0.031:2	./.	./.	0/1:7,3:35:10:0.300:2
chrX	153492716	rs371039245	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant5-variant7-variant9-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0/1:179,5:33:184:0.027:2	./.	0/1:187,8:32:196:0.041:2	0/1:104,90:32:194:0.464:2	./.	0/1:182,13:32:195:0.067:2	0/1:152,43:32:195:0.221:2	./.	0/1:191,5:33:196:0.026:2	0/1:1,33:32:34:0.971:2
chrX	153492772	rs142076459	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:179,17:31:197:0.087:2	./.	./.	./.
chrX	153492783	rs146189239	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:178,20:32:198:0.101:2	./.	./.	./.
chrX	153492789	rs139163406	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant5-variant6-variant7-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:124,18:32:142:0.127:2	./.	0/1:141,52:31:193:0.269:2	0/1:162,35:31:197:0.178:2	0/1:148,52:31:200:0.260:2	./.	./.	./.	./.
chrX	153494325	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:98,50:30:148:0.338:2
chrX	153580371	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,4:32:20:0.200:2	./.	./.
chrX	153581803	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:123,4:32:127:0.031:2	./.	./.	./.	./.	./.	./.	./.
chrX	153585827	rs61741041	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,58:31:108:0.537:2	./.	./.	./.
chrX	153587369	rs188943867	T	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,67:30:159:0.421:2	./.	./.	./.	./.
chrX	153599470	.	A	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,6:33:191:0.032:2	./.	./.	./.
chrX	153599521	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:99,6:29:105:0.057:2	./.	./.	./.
chrX	153599526	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,6:29:95:0.063:2	./.	./.	./.
chrX	153608594	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,4:30:118:0.034:2	./.	./.	./.	./.
chrX	153608604	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:60,37:31:97:0.381:2	0/1:27,28:31:55:0.509:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	153627889	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:65,4:32:69:0.058:2	./.	./.	./.	./.	./.	./.
chrX	153628230	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:154,5:31:159:0.031:2	./.	./.
chrX	153629155	rs12012747	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,69:32:70:0.986:2	0/1:0,36:32:36:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,33:32:33:1.00:2	0/1:2,21:32:23:0.913:2	0/1:0,26:32:26:1.00:2	0/1:0,29:32:29:1.00:2	0/1:24,11:33:35:0.314:2	0/1:0,32:33:32:1.00:2	0/1:1,33:32:34:0.971:2	0/1:0,28:33:28:1.00:2
chrX	153633359	rs1130929	G	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,99:28:99:1.00:2	0/1:0,88:29:88:1.00:2	0/1:0,25:29:25:1.00:2	0/1:0,96:30:96:1.00:2	0/1:0,137:29:137:1.00:2	0/1:1,94:29:95:0.989:2	0/1:0,183:29:183:1.00:2	0/1:98,90:29:188:0.479:2	0/1:1,83:29:84:0.988:2	0/1:0,108:29:108:1.00:2	0/1:1,94:28:95:0.989:2
chrX	153641619	rs41313420	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:24,28:27:52:0.538:2	./.	./.	./.	./.
chrX	153642458	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:164,4:34:168:0.024:2
chrX	153657083	rs28497482	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	0/1:0,8:31:8:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,5:30:5:1.00:2	./.	./.
chrX	153663458	rs73638280	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:89,106:29:195:0.544:2	./.	./.	./.
chrX	153664109	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:137,4:33:141:0.028:2	./.
chrX	153667176	rs4834	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,69:30:71:0.972:2	./.	0/1:0,175:29:175:1.00:2	./.	./.	./.
chrX	153676861	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:174,4:31:178:0.022:2	./.	./.	./.	./.
chrX	153678426	rs146149675	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:69,74:31:143:0.517:2	0/1:72,58:31:130:0.446:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	153689893	rs35285799	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:6,8:33:14:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	153689942	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,8:31:13:0.615:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	153693509	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,4:32:58:0.069:2	./.	./.	./.	./.	./.	./.	./.
chrX	153693811	rs5945429	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:73,44:31:117:0.376:2	./.	0/1:27,28:31:55:0.509:2	./.
chrX	153694187	rs35567597	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,25:32:48:0.521:2	./.	./.	./.	./.
chrX	153694334	rs5945430	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:50,54:32:104:0.519:2	./.	0/1:51,44:32:95:0.463:2	./.
chrX	153695908	rs60361517	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,37:31:64:0.578:2	./.
chrX	153696247	rs5987266	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,57:31:57:1.00:2	./.	0/1:23,15:31:38:0.395:2	./.
chrX	153696548	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:36,4:32:40:0.100:2	./.	./.	./.	./.	./.	./.
chrX	153696765	rs140160422	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,15:32:20:0.750:2	./.	./.	./.	./.
chrX	153713787	rs7057286	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,137:32:137:1.00:2	0/1:74,4:33:78:0.051:2	0/1:58,62:32:120:0.517:2	./.
chrX	153717037	rs201722705	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:135,4:31:139:0.029:2	./.	./.	./.	./.	./.	./.
chrX	153736694	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:4,5:23:9:0.556:2	./.	./.	./.	./.	./.	./.
chrX	153760654	rs2230037	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:66,52:31:118:0.441:2	./.
chrX	153761811	rs137852318	C	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:10,11:32:21:0.524:2	./.	./.	./.	./.	./.	./.	./.	./.
chrX	153763492	rs1050829	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:78,115:32:193:0.596:2	./.	./.	./.
chrX	153792168	rs201709278	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:91,69:32:160:0.431:2	./.
chrX	153880426	rs201803251	C	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:187,6:32:193:0.031:2	0/1:189,7:32:196:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	153880654	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:167,4:33:171:0.023:2	./.	./.	./.	./.
chrX	153880743	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:70,4:30:74:0.054:2	./.
chrX	153880830	rs4326559	A	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,61:30:62:0.984:2	./.	0/1:70,48:28:118:0.407:2	./.	0/1:44,52:29:97:0.542:2	0/1:2,43:29:45:0.956:2
chrX	153881525	rs17328091	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,83:31:83:1.00:2	./.	0/1:75,99:32:174:0.569:2	./.	0/1:72,69:32:141:0.489:2	0/1:0,81:32:82:1.00:2
chrX	153994596	rs2728532	G	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,48:32:49:0.980:2	0/1:0,20:32:20:1.00:2	0/1:0,8:29:8:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,95:32:95:1.00:2	0/1:0,33:33:33:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,50:32:50:1.00:2
chrX	154005148	rs1800533	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,17:30:43:0.395:2	./.
chrX	154009526	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:82,4:30:86:0.047:2	./.	./.
chrX	154009541	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:31:111:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	154014630	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:122,4:33:126:0.032:2	./.
chrX	154020114	rs1126762	C	A	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,37:33:38:0.974:2	0/1:0,22:32:22:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,16:32:16:1.00:2	0/1:0,21:31:21:1.00:2	./.	0/1:0,34:33:34:1.00:2	0/1:35,16:33:51:0.314:2	0/1:0,19:33:19:1.00:2	0/1:16,36:33:52:0.692:2	0/1:2,37:32:39:0.949:2
chrX	154033024	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,40:33:40:1.00:2	./.	./.
chrX	154045735	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,2:35:5:0.400:2	./.	./.	./.	./.	./.	./.	./.
chrX	154045776	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chrX	154045785	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chrX	154059045	rs184141613	C	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,81:32:175:0.463:2	./.	./.	./.
chrX	154090025	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:103,11:32:114:0.096:2	./.	./.	./.	./.
chrX	154113594	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:40,28:30:68:0.412:2
chrX	154115925	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,45:32:151:0.298:2	./.	./.	./.	./.	./.
chrX	154116049	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:77,113:32:190:0.595:2	./.	./.
chrX	154116242	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:173,24:33:197:0.122:2	./.	./.	./.
chrX	154158201	rs1800292	T	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:27,24:33:51:0.471:2	./.
chrX	154158285	rs1800291	G	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant4	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:18,27:33:45:0.600:2	./.	./.	0/1:0,47:34:47:1.00:2
chrX	154159751	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:184,4:36:188:0.021:2	./.	./.
chrX	154176126	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,4:34:97:0.042:2	./.	./.	./.	./.	./.
chrX	154182184	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:106,4:33:110:0.036:2	./.	./.
chrX	154221241	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.	./.	./.	./.	./.	./.
chrX	154227771	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:34:101:0.040:2
chrX	154255526	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.
chrX	154261683	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:94,6:33:100:0.060:2	./.	./.	./.	./.
chrX	154261713	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:108,4:30:112:0.036:2	./.	./.	0/1:179,6:31:185:0.032:2	./.	./.	./.	./.
chrX	154348305	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:42,4:31:46:0.087:2	./.	./.	./.	./.	./.	./.
chrX	154348323	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:41,4:30:45:0.089:2	./.	./.	./.	./.	./.	./.
chrX	154456747	rs572013	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,47:32:47:1.00:2	0/1:0,26:32:26:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,14:33:14:1.00:2	0/1:0,18:33:18:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,41:33:41:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,28:34:28:1.00:2	0/1:0,53:33:53:1.00:2	0/1:0,40:33:40:1.00:2
chrX	154563670	rs7050330	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:47,37:31:84:0.440:2	./.	./.	./.
chrX	154610705	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:114,65:32:179:0.363:2
chrX	154613039	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:104,57:31:161:0.354:2	./.	./.	./.	./.	./.
chrX	154613163	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:16,31:33:47:0.660:2	./.	./.
chrX	154613356	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,36:32:194:0.186:2	./.	./.	./.
chrX	154689319	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:146,42:32:189:0.223:2
chrX	154689605	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:96,4:32:100:0.040:2	./.	./.	./.	./.	./.	./.	./.
chrX	154721258	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:112,4:32:116:0.034:2	./.	./.	./.
chrX	154743690	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:33:63:0.063:2
chrX	155004014	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,40:30:82:0.488:2	./.
chrX	155004280	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:3,3:27:6:0.500:2	0/1:39,37:33:76:0.487:2	0/1:3,74:31:77:0.961:2	0/1:0,82:32:82:1.00:2	./.	0/1:51,30:32:81:0.370:2	./.	0/1:1,61:33:62:0.984:2	./.
chrX	155004437	.	G	T	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:46,78:32:124:0.629:2	0/1:52,49:32:101:0.485:2	0/1:0,16:31:16:1.00:2	0/1:0,124:32:124:1.00:2	0/1:3,64:31:67:0.955:2	0/1:0,104:31:104:1.00:2	./.	0/1:77,62:31:139:0.446:2	./.	0/1:0,125:32:125:1.00:2	0/1:0,136:32:136:1.00:2
chrX	155004636	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,119:32:119:1.00:2	./.
chrX	155005254	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,96:32:96:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,12:31:12:1.00:2	0/1:0,99:32:99:1.00:2	0/1:0,85:31:85:1.00:2	0/1:0,92:31:92:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,81:31:81:1.00:2	0/1:0,108:33:108:1.00:2	0/1:0,60:32:60:1.00:2	0/1:0,88:32:89:1.00:2
chrX	155006050	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,59:32:59:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,3:32:3:1.00:2	0/1:0,49:32:49:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,53:31:53:1.00:2	0/1:0,40:32:40:1.00:2	0/1:0,51:32:51:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,67:32:67:1.00:2
chrX	155006581	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:28,21:31:49:0.429:2
chrX	155006623	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:33,29:32:62:0.468:2	./.	./.	./.	./.	./.	./.	0/1:1,64:32:65:0.985:2
chrX	155006982	.	A	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,79:31:79:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,83:32:83:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,62:32:62:1.00:2	0/1:0,97:32:97:1.00:2	0/1:0,80:33:81:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,70:32:70:1.00:2
chrX	155007236	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,136:32:136:1.00:2	./.
chrX	155007278	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,47:31:47:1.00:2	0/1:0,33:31:33:1.00:2	./.	./.	./.	./.	0/1:0,58:30:58:1.00:2	./.	0/1:0,48:32:48:1.00:2	./.	./.
chrX	155008583	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,42:31:42:1.00:2	0/1:0,33:31:33:1.00:2	0/1:0,9:30:9:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,45:29:45:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,55:30:55:1.00:2	0/1:0,65:31:65:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,80:31:80:1.00:2
chrX	155008671	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:32:63:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,9:32:9:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,58:33:58:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,46:33:46:1.00:2	0/1:0,64:32:64:1.00:2
chrX	155008848	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:32,36:31:68:0.529:2	0/1:35,18:32:53:0.340:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	155009102	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,45:30:45:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,2:31:2:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,24:30:24:1.00:2	0/1:0,42:30:42:1.00:2	0/1:0,15:31:15:1.00:2	0/1:0,33:30:33:1.00:2	0/1:0,46:31:47:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,58:30:58:1.00:2
chrX	155009225	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,25:32:25:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,21:31:21:1.00:2	0/1:0,16:30:16:1.00:2	0/1:0,25:31:25:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,15:29:15:1.00:2	0/1:0,25:32:25:1.00:2	0/1:0,17:30:17:1.00:2	0/1:0,17:29:17:1.00:2
chrX	155009661	.	A	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:52,42:30:94:0.447:2	0/1:38,30:28:68:0.441:2	0/1:6,8:30:14:0.571:2	0/1:72,49:30:121:0.405:2	0/1:0,54:29:54:1.00:2	0/1:0,107:29:107:1.00:2	0/1:3,82:29:85:0.965:2	0/1:0,101:29:101:1.00:2	0/1:0,103:30:103:1.00:2	0/1:0,76:30:76:1.00:2	./.
chrX	155009829	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:32:53:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,6:30:6:1.00:2	0/1:0,52:32:52:1.00:2	0/1:0,44:31:44:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,31:32:31:1.00:2	0/1:0,54:31:54:1.00:2	0/1:1,50:33:51:0.980:2	0/1:0,52:33:52:1.00:2	0/1:0,82:33:82:1.00:2
chrX	155009856	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:36,23:29:59:0.390:2	0/1:28,21:30:49:0.429:2	0/1:4,3:29:7:0.429:2	0/1:39,23:29:62:0.371:2	0/1:0,39:29:39:1.00:2	0/1:0,52:30:52:1.00:2	0/1:1,32:30:33:0.970:2	0/1:33,25:30:58:0.431:2	0/1:0,51:31:51:1.00:2	0/1:0,50:30:50:1.00:2	./.
chrX	155010062	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:32:53:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,56:31:56:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,85:30:85:1.00:2	0/1:0,60:31:60:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,93:31:93:1.00:2
chrX	155010077	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,53:32:53:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,4:31:4:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,70:32:70:1.00:2	0/1:0,65:33:65:1.00:2	0/1:0,59:32:59:1.00:2	0/1:0,85:32:85:1.00:2
chrX	155010308	.	G	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,23:33:23:1.00:2	0/1:0,16:31:16:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,20:32:20:1.00:2	0/1:0,28:31:28:1.00:2	0/1:0,11:32:11:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,19:33:19:1.00:2	0/1:0,35:32:36:1.00:2	0/1:0,42:32:42:1.00:2
chrX	155010841	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:23,21:31:44:0.477:2	./.
chrX	155011012	.	T	C	.	PASS	AC=5;AF=0.333;AN=15;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:25,22:30:47:0.468:2	0/1:12,15:29:27:0.556:2	0/1:1,3:28:4:0.750:2	./.	./.	./.	./.	0/1:21,16:29:37:0.432:2	./.	0/1:12,17:29:29:0.586:2	./.
chrX	155011216	.	T	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,64:33:64:1.00:2	0/1:0,31:33:31:1.00:2	0/1:0,2:34:2:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,46:31:46:1.00:2	0/1:0,36:32:36:1.00:2	0/1:0,49:33:49:1.00:2	0/1:0,47:33:47:1.00:2	0/1:0,48:33:48:1.00:2	0/1:0,59:33:59:1.00:2
chrX	155011276	.	C	T	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:32:60:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,3:33:3:1.00:2	0/1:0,62:31:62:1.00:2	0/1:0,26:30:26:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,32:31:32:1.00:2	0/1:0,46:32:46:1.00:2	0/1:1,43:33:44:0.977:2	0/1:0,46:32:46:1.00:2	0/1:0,54:32:54:1.00:2
chrX	155011332	.	T	C	.	PASS	AC=7;AF=0.333;AN=21;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:5,3:31:8:0.375:2	0/1:29,29:29:58:0.500:2	0/1:0,25:29:25:1.00:2	0/1:2,38:30:40:0.950:2	./.	0/1:25,17:30:42:0.405:2	./.	0/1:11,23:31:34:0.676:2	0/1:24,23:28:47:0.489:2
chrX	155011472	.	T	A	.	PASS	AC=11;AF=0.333;AN=33;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,63:32:63:1.00:2	0/1:0,41:32:41:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,65:32:65:1.00:2	0/1:0,78:31:78:1.00:2	0/1:0,58:32:58:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,94:33:94:1.00:2	0/1:0,64:32:64:1.00:2	0/1:0,95:32:95:1.00:2
chrX	155011829	.	T	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,12:31:31:0.387:2	./.	0/1:41,17:31:58:0.293:2	0/1:0,42:31:42:1.00:2	./.
chrX	155011926	.	T	C	.	PASS	AC=10;AF=0.333;AN=30;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,23:32:41:0.561:2	0/1:14,13:33:27:0.481:2	./.	0/1:14,8:32:22:0.364:2	0/1:9,8:31:17:0.471:2	0/1:0,26:31:26:1.00:2	0/1:5,14:31:19:0.737:2	0/1:0,28:31:28:1.00:2	0/1:31,7:32:39:0.184:2	0/1:0,19:32:19:1.00:2	0/1:28,21:31:49:0.429:2
chrX	155012060	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:8,5:31:13:0.385:2	0/1:3,4:31:7:0.571:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrX	155231110	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:121,4:33:125:0.032:2	./.
chrX	155239499	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,3:29:10:0.300:2	./.	./.	./.
chrX	155239824	.	A	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:44,38:32:82:0.463:2	./.	./.	./.	0/1:56,5:33:61:0.082:2	./.	./.	0/1:22,14:32:36:0.389:2
chrX	155239827	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,37:32:87:0.425:2	./.	./.	./.	./.	./.	./.	0/1:23,14:31:37:0.378:2
chrY	150860	rs9785927	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,76:31:77:0.987:2	0/1:4,45:31:49:0.918:2	0/1:0,9:30:9:1.00:2	0/1:77,52:31:129:0.403:2	0/1:89,63:30:152:0.414:2	0/1:0,94:31:94:1.00:2	0/1:2,122:31:124:0.984:2	0/1:83,64:30:148:0.435:2	0/1:71,59:31:130:0.454:2	0/1:0,104:31:104:1.00:2	0/1:0,92:31:92:1.00:2
chrY	157362	rs11556996	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:62,42:31:105:0.404:2	0/1:35,32:30:67:0.478:2	0/1:0,28:30:28:1.00:2	./.	0/1:89,101:31:190:0.532:2	0/1:93,101:30:194:0.521:2	0/1:3,194:31:197:0.985:2	0/1:0,186:31:186:1.00:2	0/1:97,89:32:186:0.478:2	0/1:77,53:32:131:0.408:2	./.
chrY	165944	rs112920828	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:46,37:31:83:0.446:2	./.	0/1:36,30:31:66:0.455:2	./.	./.	./.	0/1:34,27:31:61:0.443:2	0/1:19,31:32:50:0.620:2
chrY	179542	rs1140798	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:18,37:31:55:0.673:2	0/1:14,10:31:24:0.417:2	./.	0/1:51,18:29:69:0.261:2	0/1:60,41:31:101:0.406:2	./.	./.	0/1:53,24:29:77:0.312:2	0/1:32,36:32:68:0.529:2	./.	./.
chrY	245170	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.
chrY	245177	rs148086983	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.
chrY	245231	rs1133523	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.
chrY	249360	rs1133520	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:19,25:30:44:0.568:2	./.	./.	0/1:9,14:31:24:0.609:2	0/1:10,5:25:15:0.333:2	./.
chrY	249362	rs2738376	A	G	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,15:26:15:1.00:2	0/1:0,13:27:13:1.00:2	./.	0/1:18,8:28:26:0.308:2	0/1:0,5:25:5:1.00:2	0/1:0,44:28:44:1.00:2	0/1:20,9:30:29:0.310:2	0/1:0,20:28:20:1.00:2	0/1:0,24:29:24:1.00:2	0/1:0,15:26:15:1.00:2	./.
chrY	249591	rs2738373	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,97:33:97:1.00:2	0/1:0,87:32:87:1.00:2	0/1:0,21:32:21:1.00:2	0/1:97,76:32:173:0.439:2	0/1:1,173:33:174:0.994:2	0/1:2,171:32:173:0.988:2	0/1:86,81:33:167:0.485:2	0/1:4,165:32:169:0.976:2	0/1:0,181:33:181:1.00:2	0/1:0,147:33:147:1.00:2	0/1:54,66:32:120:0.550:2
chrY	272161	rs3813594	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:16,22:28:38:0.579:2	0/1:109,86:27:195:0.441:2	0/1:112,83:28:195:0.426:2	0/1:104,90:27:194:0.464:2	0/1:7,190:28:197:0.964:2	./.	0/1:110,80:29:190:0.421:2	0/1:111,83:28:194:0.428:2	0/1:2,160:27:162:0.988:2
chrY	272193	rs3813593	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:114,77:29:192:0.403:2	./.	0/1:88,104:29:194:0.542:2	./.	./.	./.	./.
chrY	272257	rs17855192	G	A	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant6-variant8	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:16,6:30:22:0.273:2	./.	./.	0/1:95,76:31:171:0.444:2	./.	./.	0/1:100,86:32:186:0.462:2	0/1:63,58:32:121:0.479:2	0/1:79,69:31:149:0.466:2
chrY	1264931	rs151218732	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:65,61:32:126:0.484:2	./.
chrY	1264993	rs375729637	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:108,4:34:112:0.036:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrY	1271326	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:14,11:29:25:0.440:2	./.	./.	./.	./.	./.	./.	./.	./.
chrY	1281495	rs140859855	G	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:42,46:28:88:0.523:2	./.	./.	./.	0/1:35,28:29:63:0.444:2	./.	0/1:26,40:28:66:0.606:2	0/1:0,59:28:59:1.00:2
chrY	1351646	rs67006588	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:89,63:32:152:0.414:2	./.	./.	0/1:94,82:32:176:0.466:2	0/1:84,82:33:166:0.494:2	./.	./.
chrY	1359247	rs138964358	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:57,35:32:92:0.380:2	./.	./.	./.	./.	./.	./.	./.
chrY	1372868	rs28460440	G	A	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:51,24:30:75:0.320:2	0/1:107,85:31:192:0.443:2	0/1:87,87:31:174:0.500:2	0/1:103,84:31:187:0.449:2	0/1:98,77:32:175:0.440:2	./.	0/1:105,82:32:187:0.439:2	0/1:95,79:31:174:0.454:2	./.
chrY	1378421	rs28722602	G	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant4-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:36,40:33:76:0.526:2	0/1:20,38:32:58:0.655:2	./.	0/1:61,38:33:99:0.384:2	./.	./.	./.	0/1:74,53:33:127:0.417:2	./.	./.	./.
chrY	1410679	rs138038721	G	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:111,81:32:192:0.422:2	./.	./.	./.
chrY	1410740	rs6647005	A	G	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,82:33:82:1.00:2	0/1:1,52:32:53:0.981:2	0/1:0,23:33:23:1.00:2	0/1:1,105:33:106:0.991:2	0/1:1,135:32:137:0.993:2	0/1:0,133:32:133:1.00:2	0/1:1,128:33:129:0.992:2	0/1:1,146:32:148:0.993:2	0/1:0,125:33:125:1.00:2	0/1:0,117:33:117:1.00:2	0/1:0,90:33:90:1.00:2
chrY	1417404	rs17879004	A	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:115,78:32:193:0.404:2	./.	0/1:122,71:32:193:0.368:2	./.	./.	./.
chrY	1421117	rs142385163	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,15:30:44:0.341:2	./.	./.	./.	./.	./.
chrY	1447644	rs17883366	G	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:47,38:33:85:0.447:2	0/1:31,21:33:52:0.404:2	./.	./.	./.	0/1:75,56:32:132:0.427:2	./.	0/1:55,62:32:117:0.530:2	./.	0/1:41,41:33:82:0.500:2	./.
chrY	1458324	rs7205	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:19,24:31:43:0.558:2	./.	0/1:1,42:30:43:0.977:2	./.	0/1:15,25:31:40:0.625:2	./.	./.	0/1:12,11:31:23:0.478:2
chrY	1458583	rs14005	T	C	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,52:27:112:0.464:2	./.	0/1:1,119:27:120:0.992:2	./.	0/1:91,63:27:154:0.409:2	./.	./.	0/1:41,35:26:76:0.461:2
chrY	1481648	rs1127297	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:116,81:31:197:0.411:2	./.	0/1:110,83:32:193:0.430:2	0/1:111,81:32:192:0.422:2	0/1:101,92:33:193:0.477:2	./.	./.
chrY	1481687	rs79968027	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:67,80:29:147:0.544:2	./.
chrY	1487002	rs6644873	C	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:28,32:31:60:0.533:2	0/1:41,35:30:76:0.461:2	0/1:38,38:31:76:0.500:2	0/1:2,81:31:83:0.976:2	./.	0/1:42,48:31:90:0.533:2	0/1:0,58:31:58:1.00:2	0/1:43,34:29:77:0.442:2
chrY	1487881	rs4503285	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,8:31:12:0.667:2	./.	./.	0/1:8,16:31:24:0.667:2	./.
chrY	1487953	rs11553052	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:1,36:32:37:0.973:2	0/1:0,29:32:29:1.00:2	./.	0/1:39,24:32:63:0.381:2	0/1:33,26:31:59:0.441:2	0/1:22,28:31:50:0.560:2	./.	0/1:0,62:32:62:1.00:2	0/1:20,25:33:45:0.556:2	./.	0/1:17,29:33:46:0.630:2
chrY	1490706	rs35466875	A	G	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:5,174:32:179:0.972:2	0/1:2,167:32:169:0.988:2	./.	0/1:106,83:32:189:0.439:2	0/1:110,82:32:192:0.427:2	./.	./.	0/1:5,170:32:175:0.971:2	0/1:107,80:33:187:0.428:2	./.	0/1:91,98:33:189:0.519:2
chrY	1496792	rs5949099	G	A	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:3,6:26:9:0.667:2	./.	0/1:0,4:32:4:1.00:2	0/1:2,3:27:5:0.600:2	./.	0/1:2,5:27:7:0.714:2	0/1:0,8:30:8:1.00:2	0/1:1,5:30:6:0.833:2
chrY	1496842	rs11553051	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant7-variant9-variant10	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,7:32:7:1.00:2	./.	./.	0/1:13,6:30:19:0.316:2	0/1:9,3:32:12:0.250:2	./.	./.	0/1:0,13:32:13:1.00:2	0/1:11,5:33:16:0.313:2	./.	0/1:13,3:32:16:0.188:2
chrY	1496876	rs5948863	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant6-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:7,12:31:19:0.632:2	./.	0/1:0,29:33:29:1.00:2	0/1:0,18:30:18:1.00:2	./.	0/1:9,9:31:18:0.500:2	0/1:0,17:33:17:1.00:2	0/1:6,17:31:23:0.739:2
chrY	1496954	rs112813225	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:17,11:32:28:0.393:2	./.	./.	./.	./.	./.
chrY	1501173	rs140800260	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:8,8:31:16:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.
chrY	1503907	rs28587213	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0/1:56,41:31:97:0.423:2	0/1:34,20:32:55:0.370:2	./.	0/1:69,86:31:155:0.555:2	./.	./.	./.	./.	./.	./.	./.
chrY	1504649	rs3183025	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:60,32:27:92:0.348:2	0/1:34,20:29:54:0.370:2	0/1:8,9:29:17:0.529:2	0/1:0,150:29:150:1.00:2	0/1:84,65:28:149:0.436:2	./.	0/1:79,58:30:137:0.423:2	0/1:0,135:28:135:1.00:2	0/1:99,69:30:168:0.411:2	./.	0/1:66,52:28:118:0.441:2
chrY	1504655	rs28592995	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:61,29:28:90:0.322:2	0/1:31,22:29:53:0.415:2	0/1:8,8:27:16:0.500:2	0/1:0,137:28:137:1.00:2	0/1:81,57:28:138:0.413:2	./.	0/1:73,47:29:120:0.392:2	0/1:0,128:28:128:1.00:2	0/1:93,65:29:158:0.411:2	./.	0/1:63,52:27:116:0.452:2
chrY	1662421	rs73631254	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,7:18:40:0.175:2
chrY	1662722	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:29,13:10:42:0.310:2	./.	0/1:17,9:15:27:0.346:2
chrY	1663021	rs6644621	C	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:20,8:29:28:0.286:2	0/1:12,9:31:21:0.429:2	./.	./.	0/1:0,43:30:43:1.00:2	0/1:0,38:31:38:1.00:2	0/1:1,23:31:24:0.958:2	0/1:1,64:31:65:0.985:2	0/1:0,38:31:38:1.00:2	0/1:0,37:31:37:1.00:2	0/1:0,37:31:37:1.00:2
chrY	1669897	rs28661622	C	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:24:4:1.00:2	./.	./.	0/1:0,3:28:3:1.00:2	./.	0/1:0,4:23:4:1.00:2
chrY	1702102	rs201971065	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:189,5:28:194:0.026:2
chrY	1705404	rs2228608	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:91,100:31:191:0.524:2	./.	./.	./.	./.	./.	./.
chrY	1711761	rs121918822	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:117,79:31:196:0.403:2	./.	./.	./.
chrY	2089186	rs12010	C	T	.	PASS	AC=7;AF=0.333;AN=21;DB;SOMATIC;VT=SNP;set=variant-variant3-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:94,68:32:162:0.420:2	0/1:52,40:32:92:0.435:2	0/1:0,35:32:35:1.00:2	0/1:95,91:32:186:0.489:2	./.	0/1:99,89:31:188:0.473:2	./.	./.	0/1:94,82:33:176:0.466:2	./.	0/1:82,79:32:161:0.491:2
chrY	2089200	rs3210910	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:87,58:28:145:0.400:2	0/1:46,38:28:84:0.452:2	0/1:0,28:29:28:1.00:2	0/1:2,179:28:181:0.989:2	0/1:1,169:28:171:0.994:2	0/1:92,84:28:176:0.477:2	0/1:2,170:29:172:0.988:2	0/1:0,180:28:180:1.00:2	0/1:0,167:29:167:1.00:2	0/1:0,153:29:153:1.00:2	0/1:2,158:28:160:0.988:2
chrY	2111129	rs1127915	C	G	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:22,35:32:57:0.614:2	0/1:13,19:32:32:0.594:2	./.	0/1:59,40:33:99:0.404:2	0/1:0,56:31:56:1.00:2	0/1:40,46:32:86:0.535:2	0/1:0,41:33:41:1.00:2	0/1:0,75:32:75:1.00:2	0/1:28,43:33:71:0.606:2	0/1:0,45:32:45:1.00:2	0/1:17,28:31:45:0.622:2
chrY	2134897	rs143245543	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:101,91:31:193:0.474:2
chrY	2293343	rs139841013	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:31,21:32:52:0.404:2	./.
chrY	2358437	rs3752331	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant3-variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:11,16:30:27:0.593:2	./.	0/1:25,15:31:40:0.375:2	0/1:16,18:31:34:0.529:2	./.	./.
chrY	2582482	rs1136447	C	T	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:0,10:32:10:1.00:2	0/1:103,82:32:185:0.443:2	0/1:63,55:33:118:0.466:2	0/1:0,115:32:115:1.00:2	0/1:1,83:32:84:0.988:2	0/1:2,159:32:161:0.988:2	0/1:116,67:33:183:0.366:2	0/1:69,56:33:125:0.448:2	./.
chrY	2594302	rs1136470	C	T	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:54,32:32:86:0.372:2	./.	./.	0/1:44,41:32:85:0.482:2	./.	./.
chrY	2606261	rs11556080	A	G	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:92,79:30:171:0.462:2	./.	./.	./.	./.
chrY	2606283	rs17342297	A	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:93,86:31:179:0.480:2	./.	./.	./.	./.
chrY	2608783	rs312256	C	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,125:30:125:1.00:2	0/1:107,91:31:198:0.460:2	./.	./.	0/1:104,92:32:196:0.469:2	0/1:110,75:31:185:0.405:2	./.
chrY	2608800	rs312255	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant6-variant7-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:103,4:32:107:0.037:2	./.	./.	0/1:0,138:32:138:1.00:2	0/1:113,83:32:196:0.423:2	./.	./.	0/1:107,90:34:197:0.457:2	0/1:113,82:33:195:0.421:2	./.
chrY	2655568	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:43,4:33:47:0.085:2	./.	./.	./.	./.	./.	./.
chrY	2712165	.	T	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,5:30:6:0.833:2	./.	0/1:0,2:29:2:1.00:2	./.
chrY	2712201	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:190,4:32:194:0.021:2	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.
chrY	2712207	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.
chrY	2722723	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrY	2722752	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.
chrY	2829384	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	0/1:0,3:33:3:1.00:2	./.	./.	./.	./.
chrY	2829389	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.
chrY	2829432	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	./.	./.	./.	./.
chrY	2843222	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrY	2843230	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrY	2843236	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrY	2843580	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:3,4:31:7:0.571:2	0/1:2,2:33:4:0.500:2	0/1:0,2:32:2:1.00:2	./.	./.	./.	0/1:0,4:31:4:1.00:2	0/1:1,6:32:7:0.857:2	./.	0/1:0,6:30:6:1.00:2	./.
chrY	2843586	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:3,6:32:9:0.667:2	0/1:2,2:33:4:0.500:2	0/1:0,2:33:2:1.00:2	./.	./.	./.	0/1:0,4:33:4:1.00:2	0/1:1,6:33:7:0.857:2	./.	0/1:0,6:32:6:1.00:2	./.
chrY	2843607	.	A	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:3,6:33:9:0.667:2	0/1:2,2:33:4:0.500:2	0/1:0,2:32:2:1.00:2	./.	./.	./.	0/1:0,4:32:4:1.00:2	0/1:2,6:32:8:0.750:2	./.	0/1:0,6:29:6:1.00:2	./.
chrY	2846057	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	0/1:1,2:34:3:0.667:2	0/1:0,2:33:2:1.00:2	./.	0/1:0,2:33:2:1.00:2	./.
chrY	2846075	.	G	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	0/1:0,3:30:3:1.00:2	0/1:0,2:31:2:1.00:2	./.	0/1:0,2:33:2:1.00:2	./.
chrY	2846089	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	0/1:0,2:31:2:1.00:2	./.
chrY	2846873	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.
chrY	2847158	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.
chrY	2847194	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.
chrY	2847492	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:82,4:32:86:0.047:2	./.	./.	./.	./.	./.	./.	./.
chrY	2847719	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.
chrY	2847779	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:1,3:33:4:0.750:2	./.	./.	./.	./.	./.	./.	0/1:1,4:32:5:0.800:2	./.	0/1:4,3:32:7:0.429:2	./.
chrY	2847854	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.
chrY	2847944	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrY	2848005	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant6	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:59,4:30:63:0.063:2	0/1:1,3:30:4:0.750:2	./.	./.	./.	./.
chrY	2848010	.	C	T	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	0/1:60,4:31:64:0.063:2	0/1:1,3:32:4:0.750:2	./.	./.	./.	./.
chrY	2848025	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant5-variant6-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	0/1:48,4:32:52:0.077:2	0/1:1,3:32:4:0.750:2	./.	./.	./.	./.
chrY	4900721	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:31:7:0.429:2	./.	./.	0/1:2,2:33:4:0.500:2	./.
chrY	4900739	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant5-variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:134,4:31:138:0.029:2	./.	0/1:3,3:26:6:0.500:2	./.	./.	./.	./.
chrY	4924958	.	C	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:1,7:31:8:0.875:2	0/1:0,5:31:5:1.00:2	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	0/1:0,2:31:2:1.00:2	./.
chrY	4925004	rs2249187	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:31:4:1.00:2	0/1:1,2:33:3:0.667:2	./.	./.	./.	0/1:155,4:32:160:0.025:2	./.	0/1:0,6:33:6:1.00:2	./.	0/1:0,3:33:3:1.00:2	./.
chrY	4925062	rs207480113	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,6:33:6:1.00:2	./.	./.	./.	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.
chrY	4925084	rs2571796	A	G	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:1,8:33:9:0.889:2	0/1:2,3:33:5:0.600:2	./.	./.	./.	./.	0/1:0,3:31:3:1.00:2	0/1:0,2:32:2:1.00:2	./.	0/1:1,2:31:3:0.667:2	./.
chrY	4925138	rs2571795	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:3,7:32:10:0.700:2	0/1:1,4:32:5:0.800:2	./.	./.	./.	./.	0/1:0,3:33:3:1.00:2	./.	./.	0/1:2,3:32:5:0.600:2	./.
chrY	4925221	rs2563755	C	T	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant9-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0/1:4,3:32:7:0.429:2	./.	./.	0/1:185,4:32:189:0.021:2	./.	0/1:190,5:30:195:0.026:2	./.	./.	./.	./.	./.
chrY	4968040	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:24:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrY	4968313	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,152:33:153:0.993:2	./.	./.
chrY	4968368	rs199979134	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,129:31:129:1.00:2
chrY	4968655	rs75134848	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:34:4:0.750:2	./.	./.	./.	0/1:0,79:32:80:1.00:2
chrY	4972364	.	C	G	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant5-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	0/1:2,3:24:5:0.600:2	0/1:1,4:29:5:0.800:2	./.	./.	./.
chrY	4972401	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.
chrY	5605717	.	T	C	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:2,6:31:8:0.750:2	0/1:3,5:32:8:0.625:2	./.	./.	./.	./.	0/1:13,5:32:18:0.278:2	./.	./.	0/1:0,5:32:5:1.00:2	./.
chrY	5605969	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.
chrY	5605970	.	C	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.
chrY	6738020	.	A	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.
chrY	6738101	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	0/1:0,2:29:2:1.00:2	./.	./.	./.
chrY	6893161	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:32:6:0.667:2	./.	./.	./.	./.
chrY	6938313	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.
chrY	6938343	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:30:5:0.800:2	./.	./.	./.
chrY	6938367	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:28:5:0.800:2	./.	./.	./.
chrY	6942595	.	G	A	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,3:32:3:1.00:2	0/1:0,4:32:4:1.00:2	./.	./.	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.	./.
chrY	6942621	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:1,3:32:4:0.750:2	0/1:0,4:31:4:1.00:2	./.	./.	./.	./.	./.	0/1:1,4:32:5:0.800:2	./.	./.	./.
chrY	6942668	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:35:4:0.750:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrY	6948777	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:33:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chrY	6948806	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chrY	6953968	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,3:27:7:0.429:2	./.	./.	./.
chrY	6953986	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,3:31:6:0.500:2	./.	./.	./.
chrY	6954342	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrY	7171988	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:4,7:28:11:0.636:2	./.	./.	./.
chrY	7172060	.	C	T	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,2:35:2:1.00:2	./.	./.	./.	./.	./.	0/1:6,3:33:9:0.333:2	0/1:1,5:32:6:0.833:2	./.	0/1:0,2:32:2:1.00:2	./.
chrY	7194163	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrY	7194169	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrY	7194190	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.
chrY	7224185	rs55673602	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,8:29:8:1.00:2	./.	0/1:0,5:27:5:1.00:2	./.
chrY	7224237	rs55691360	C	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.
chrY	7224240	rs56024758	T	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.
chrY	7235448	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chrY	14532067	.	T	A	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,2:29:2:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,2:33:2:1.00:2	./.	0/1:54,10:32:64:0.156:2	./.	0/1:2,27:30:29:0.931:2	./.	0/1:54,8:33:62:0.129:2	0/1:0,4:30:4:1.00:2	0/1:50,12:31:62:0.194:2
chrY	14532126	.	C	A	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,11:32:13:0.846:2	./.	0/1:35,3:34:38:0.079:2	0/1:0,2:33:2:1.00:2	0/1:26,4:32:30:0.133:2
chrY	14834059	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,6:32:8:0.750:2	./.	./.	./.
chrY	14834068	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,6:29:8:0.750:2	./.	./.	./.
chrY	14885703	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.	./.
chrY	14902342	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.
chrY	14902354	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.
chrY	14902405	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.
chrY	14903467	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,6:30:6:1.00:2	./.
chrY	14903476	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,6:32:6:1.00:2	./.
chrY	14903496	.	C	G	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:34:3:0.667:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,6:33:6:1.00:2	./.
chrY	14922127	.	T	G	.	PASS	AC=4;AF=0.333;AN=12;SOMATIC;VT=SNP;set=variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:2,4:32:6:0.667:2	0/1:1,2:32:3:0.667:2	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.	./.
chrY	14922178	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.
chrY	14945738	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.
chrY	14945746	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.
chrY	14954259	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chrY	14954301	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chrY	14954319	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:33:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chrY	14968372	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:84,4:32:88:0.045:2	./.	./.	./.	./.	./.	./.
chrY	15023830	.	T	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	0/1:0,4:33:4:1.00:2	./.
chrY	15023857	.	A	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.	0/1:0,4:32:4:1.00:2	./.
chrY	15023858	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	0/1:0,4:32:4:1.00:2	./.
chrY	15027134	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chrY	15027842	.	C	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant-variant3	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:126,4:32:130:0.031:2	./.	0/1:160,5:32:165:0.030:2
chrY	15029971	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,4:31:4:1.00:2	./.	./.	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	./.	./.
chrY	15029977	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	./.	./.
chrY	15030028	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrY	15436485	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	0/1:0,5:32:5:1.00:2	./.	./.	./.
chrY	15436527	.	T	G	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,2:31:2:1.00:2	0/1:0,2:32:2:1.00:2	0/1:0,2:32:2:1.00:2	./.	./.	./.	0/1:0,4:32:4:1.00:2	0/1:0,8:32:8:1.00:2	./.	0/1:0,3:33:3:1.00:2	./.
chrY	15436530	.	T	C	.	PASS	AC=6;AF=0.333;AN=18;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:0,2:27:2:1.00:2	0/1:0,2:30:2:1.00:2	0/1:0,2:30:2:1.00:2	./.	./.	./.	0/1:0,4:30:4:1.00:2	0/1:0,8:31:8:1.00:2	./.	0/1:0,3:30:3:1.00:2	./.
chrY	15438116	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,4:31:5:0.800:2	./.	./.	./.	./.
chrY	15438146	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,7:33:9:0.778:2	./.	./.	./.	./.
chrY	15438160	.	T	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,7:32:9:0.778:2	./.	./.	./.	./.
chrY	15438188	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,4:33:6:0.667:2	./.	./.	./.	./.
chrY	15472357	.	T	C	.	PASS	AC=9;AF=0.333;AN=27;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,2:32:3:0.667:2	0/1:0,2:32:2:1.00:2	0/1:0,2:32:2:1.00:2	0/1:145,4:32:149:0.027:2	./.	0/1:135,4:32:139:0.029:2	0/1:2,7:31:9:0.778:2	0/1:0,6:32:6:1.00:2	0/1:130,5:33:135:0.037:2	0/1:2,8:32:10:0.800:2	./.
chrY	15472405	.	A	G	.	PASS	AC=8;AF=0.333;AN=24;SOMATIC;VT=SNP;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,2:33:2:1.00:2	0/1:0,2:33:2:1.00:2	0/1:0,2:33:2:1.00:2	0/1:68,4:34:72:0.056:2	./.	0/1:63,4:31:67:0.060:2	0/1:1,2:32:3:0.667:2	0/1:0,6:32:6:1.00:2	./.	0/1:2,8:32:10:0.800:2	./.
chrY	15582053	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.
chrY	15582088	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	./.	./.	./.
chrY	15582095	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.
chrY	15816230	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.
chrY	15816232	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.
chrY	16098232	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:114,11:30:125:0.088:2	./.	./.	./.	./.	./.	0/1:1,15:31:16:0.938:2	./.
chrY	16098272	.	T	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chrY	16098277	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:29:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.
chrY	16168258	.	G	A	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:99,10:30:109:0.092:2	./.	./.	./.	./.	./.	0/1:0,15:31:15:1.00:2	./.
chrY	16168479	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:34:3:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrY	16168707	.	A	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:7,4:34:11:0.364:2	0/1:0,2:33:2:1.00:2	./.	./.	./.
chrY	16835118	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.
chrY	16941644	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.
chrY	16941731	rs61741752	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:3,2:36:5:0.400:2	./.
chrY	16941749	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:1,2:32:3:0.667:2	./.	./.	./.	./.	./.	./.	0/1:6,3:34:10:0.333:2	./.	./.	./.
chrY	16941818	rs374907688	T	C,A	.	PASS	AC=2,1;AF=0.222,0.111;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant5-variant10	GT:BQ:DP:FA:SS	./.	0:.,.:0:0.00:0	./.	0:.,.:0:0.00:0	./.	./.	0:.,.:0:0.00:0	./.	./.	./.	./.	0/1:33:3:0.667:2	./.	./.	./.	./.	./.	0/2:29:11:0.556:2	./.	./.	0/1:33:3:1.00:2	./.
chrY	16942139	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:33:2:1.00:2	0/1:2,3:29:5:0.600:2	./.	./.	./.
chrY	16942268	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,3:27:5:0.600:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrY	16952335	.	T	C	.	PASS	AC=3;AF=0.333;AN=9;SOMATIC;VT=SNP;set=variant2-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:1,2:33:3:0.667:2	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:31:3:1.00:2	./.
chrY	16952347	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:2,2:33:4:0.500:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,7:32:7:1.00:2	./.
chrY	16952468	rs61741748	T	C	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant4-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:2,3:31:5:0.600:2	./.	./.	./.	./.	./.	0/1:1,3:32:4:0.750:2	./.	./.	./.
chrY	16952470	rs61741749	G	C	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:2,2:34:4:0.500:2	0/1:2,3:32:5:0.600:2	./.	./.	./.	./.	./.	0/1:1,3:31:4:0.750:2	./.	./.	./.
chrY	16952665	.	C	T	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	0/1:0,4:32:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:33:3:1.00:2	./.
chrY	16952767	rs373089425	C	T	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:2,4:33:6:0.667:2	0/1:2,6:32:8:0.750:2	./.	./.	./.	./.	./.	0/1:3,3:30:6:0.500:2	./.	0/1:0,4:31:4:1.00:2	./.
chrY	16952820	rs201144106	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:30:4:0.750:2	0/1:0,4:29:4:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrY	16952962	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:1,3:20:4:0.750:2	./.	./.	./.	./.
chrY	16952995	rs373921462	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,3:30:3:1.00:2	./.	./.	./.	./.
chrY	19991810	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:171,28:30:199:0.141:2	./.	./.
chrY	19991856	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:158,27:29:185:0.146:2
chrY	21154426	rs52812045	G	A	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant6-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:1,23:32:24:0.958:2	0/1:0,19:32:19:1.00:2	./.	./.	./.	0/1:59,13:29:73:0.181:2	./.	./.	./.	./.	./.
chrY	21154466	rs10465460	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:2,26:33:28:0.929:2	0/1:0,30:32:30:1.00:2	0/1:0,18:31:18:1.00:2	0/1:64,32:31:98:0.333:2	0/1:38,38:31:76:0.500:2	0/1:56,40:31:98:0.417:2	0/1:1,41:32:42:0.976:2	0/1:2,56:31:58:0.966:2	0/1:67,50:33:117:0.427:2	0/1:2,47:32:49:0.959:2	0/1:70,31:31:102:0.307:2
chrY	21154569	rs17855271	A	G	.	PASS	AC=8;AF=0.333;AN=24;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,6:30:6:1.00:2	0/1:0,3:30:3:1.00:2	0/1:43,7:32:50:0.140:2	0/1:31,7:28:38:0.184:2	./.	0/1:1,6:27:7:0.857:2	0/1:2,6:29:8:0.750:2	0/1:52,6:32:58:0.103:2	0/1:0,3:25:3:1.00:2	./.
chrY	21154603	rs79788321	A	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0/1:0,6:32:6:1.00:2	0/1:0,4:34:4:1.00:2	0/1:27,7:33:34:0.206:2	0/1:15,9:33:24:0.375:2	0/1:25,6:31:31:0.194:2	0/1:1,10:34:11:0.909:2	0/1:0,12:32:12:1.00:2	0/1:32,6:33:38:0.158:2	0/1:0,4:32:4:1.00:2	./.
chrY	21751444	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.
chrY	21751450	rs201771294	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.
chrY	21751453	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant2-variant8	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.	./.	./.	./.	./.	./.	0/1:0,2:32:2:1.00:2	./.
chrY	21905074	rs371502336	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:128,4:33:132:0.030:2	./.	./.	./.	./.	./.	./.	./.
chrY	22737722	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrY	22921898	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:145,4:33:149:0.027:2
chrY	22942897	rs34459399	T	C	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,103:29:103:1.00:2
chrY	23545599	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant7	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	0/1:0,19:26:19:1.00:2	./.	./.	./.	./.	./.	./.
chrY	25431610	.	T	C	.	PASS	AC=2;AF=0.333;AN=6;SOMATIC;VT=SNP;set=variant4-variant10	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	0/1:1,2:31:3:0.667:2	./.	./.	./.	./.	./.	./.	0/1:0,2:30:2:1.00:2	./.	./.	./.
chrY	25431641	.	G	C	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:34:2:1.00:2	./.	./.	./.
chrY	26191837	.	A	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:50,3:34:53:0.057:2	./.	./.	./.	./.	./.	./.	./.
chrY	26193455	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:2,126:32:128:0.984:2
chrY	26193873	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant3	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:142,52:29:194:0.268:2	./.	./.
chrY	26193919	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,151:31:178:0.853:2
chrY	27768970	.	C	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,131:33:131:1.00:2
chrY	28134058	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,2:31:2:1.00:2	./.	./.	./.
chrY	59107020	rs35474915	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:33,37:31:70:0.529:2	./.
chrY	59107286	rs306888	A	G	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant6-variant7-variant8-variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	0/1:7,4:32:11:0.364:2	0/1:41,39:32:80:0.488:2	0/1:1,77:32:78:0.987:2	0/1:0,87:32:88:1.00:2	./.	0/1:42,45:32:87:0.517:2	./.	0/1:0,46:33:46:1.00:2	./.
chrY	59107443	rs306889	G	T	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:70,48:32:118:0.407:2	0/1:33,40:32:73:0.548:2	0/1:0,20:31:20:1.00:2	0/1:2,129:32:131:0.985:2	0/1:0,79:31:79:1.00:2	0/1:1,138:31:139:0.993:2	./.	0/1:92,78:31:170:0.459:2	./.	0/1:0,115:32:115:1.00:2	0/1:1,154:33:155:0.994:2
chrY	59107484	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant9	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:194,4:33:198:0.020:2	./.	./.	./.	./.	./.	./.	./.
chrY	59107642	rs17653586	G	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:0,124:32:124:1.00:2	./.
chrY	59108260	rs700439	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,90:32:90:1.00:2	0/1:0,57:32:57:1.00:2	0/1:0,11:31:11:1.00:2	0/1:0,88:31:88:1.00:2	0/1:0,90:31:90:1.00:2	0/1:0,92:31:92:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,91:32:91:1.00:2	0/1:0,109:33:109:1.00:2	0/1:0,90:32:90:1.00:2	0/1:0,117:32:117:1.00:2
chrY	59109056	rs700438	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,58:32:58:1.00:2	0/1:0,34:32:34:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,54:31:54:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,37:32:37:1.00:2	0/1:0,67:32:67:1.00:2	0/1:0,75:32:75:1.00:2	0/1:0,45:32:45:1.00:2	0/1:0,63:32:63:1.00:2
chrY	59109587	.	G	A	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:34,15:32:49:0.306:2
chrY	59109629	rs5940574	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:36,28:32:64:0.438:2	./.	./.	./.	./.	./.	./.	0/1:0,50:31:50:1.00:2
chrY	59109988	rs700437	A	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,71:31:71:1.00:2	0/1:0,54:32:54:1.00:2	0/1:0,8:30:8:1.00:2	0/1:0,84:32:84:1.00:2	0/1:0,67:31:67:1.00:2	0/1:0,84:31:84:1.00:2	0/1:0,57:31:57:1.00:2	0/1:0,80:32:80:1.00:2	0/1:0,97:33:97:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,81:32:81:1.00:2
chrY	59110242	rs143253147	G	A	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:5,125:33:130:0.962:2	./.
chrY	59110284	rs28460671	G	A	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant3-variant5-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0/1:0,68:31:68:1.00:2	0/1:0,31:31:31:1.00:2	./.	./.	./.	./.	0/1:1,43:30:44:0.977:2	./.	0/1:0,53:31:53:1.00:2	./.	./.
chrY	59111337	.	G	T	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:97,4:33:101:0.040:2	./.	./.	./.
chrY	59111589	rs700443	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,46:31:46:1.00:2	0/1:0,34:30:34:1.00:2	0/1:0,5:29:5:1.00:2	0/1:0,57:30:57:1.00:2	0/1:0,42:29:42:1.00:2	0/1:0,51:30:51:1.00:2	0/1:0,41:31:41:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,73:31:73:1.00:2	0/1:0,66:30:66:1.00:2	0/1:0,73:31:74:1.00:2
chrY	59111677	rs700444	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,76:33:76:1.00:2	0/1:0,45:33:45:1.00:2	0/1:0,6:31:6:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,48:32:48:1.00:2	0/1:0,69:32:69:1.00:2	0/1:0,57:33:57:1.00:2	0/1:0,53:32:53:1.00:2	0/1:0,71:34:71:1.00:2	0/1:0,71:33:71:1.00:2	0/1:0,76:32:76:1.00:2
chrY	59111854	rs149660901	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	0/1:42,37:32:79:0.468:2	0/1:25,22:32:47:0.468:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrY	59112108	rs700445	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,29:31:29:1.00:2	0/1:0,35:32:35:1.00:2	0/1:0,8:31:8:1.00:2	0/1:0,55:30:56:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,24:31:24:1.00:2	0/1:0,35:31:35:1.00:2	0/1:0,47:32:47:1.00:2	0/1:0,45:31:45:1.00:2	0/1:0,61:31:61:1.00:2
chrY	59112231	rs700446	C	T	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:0,26:32:26:1.00:2	0/1:0,17:32:17:1.00:2	./.	0/1:0,20:30:20:1.00:2	0/1:0,14:29:14:1.00:2	0/1:0,21:30:21:1.00:2	0/1:0,13:32:13:1.00:2	0/1:0,22:30:22:1.00:2	0/1:0,21:33:21:1.00:2	0/1:0,7:30:7:1.00:2	0/1:0,21:32:21:1.00:2
chrY	59112667	rs700447	A	C	.	PASS	AC=10;AF=0.333;AN=30;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:45,35:30:80:0.438:2	0/1:34,32:29:66:0.485:2	0/1:10,8:29:18:0.444:2	0/1:59,53:29:112:0.473:2	0/1:3,55:30:58:0.948:2	0/1:0,102:29:102:1.00:2	0/1:1,79:29:80:0.988:2	0/1:2,99:30:101:0.980:2	0/1:0,103:30:103:1.00:2	0/1:0,80:29:80:1.00:2	./.
chrY	59112835	rs700448	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,74:32:74:1.00:2	0/1:0,38:32:38:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,71:32:71:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,32:32:32:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,70:33:70:1.00:2	0/1:0,39:31:39:1.00:2	0/1:0,83:32:83:1.00:2
chrY	59112862	rs700449	T	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0/1:45,39:31:84:0.464:2	0/1:16,20:30:36:0.556:2	./.	0/1:48,25:29:73:0.342:2	0/1:0,45:30:45:1.00:2	0/1:2,55:29:57:0.965:2	0/1:0,35:29:35:1.00:2	0/1:36,33:30:69:0.478:2	0/1:0,73:30:73:1.00:2	0/1:1,48:30:49:0.980:2	./.
chrY	59113068	rs700450	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,48:32:48:1.00:2	0/1:0,34:31:34:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,56:30:56:1.00:2	0/1:0,48:30:48:1.00:2	0/1:0,62:30:62:1.00:2	0/1:0,60:30:60:1.00:2	0/1:0,81:31:81:1.00:2	0/1:0,63:31:63:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,77:32:77:1.00:2
chrY	59113083	rs700451	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,44:32:44:1.00:2	0/1:0,33:32:33:1.00:2	0/1:0,5:31:5:1.00:2	0/1:0,50:31:50:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,48:31:48:1.00:2	0/1:0,49:31:49:1.00:2	0/1:0,64:31:64:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,39:32:39:1.00:2	0/1:0,62:32:62:1.00:2
chrY	59113314	rs700452	G	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,38:32:38:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,4:30:4:1.00:2	0/1:0,28:32:28:1.00:2	0/1:0,13:30:13:1.00:2	0/1:0,31:31:31:1.00:2	0/1:0,22:32:22:1.00:2	0/1:0,29:31:29:1.00:2	0/1:0,26:33:26:1.00:2	0/1:0,24:32:24:1.00:2	0/1:0,28:32:28:1.00:2
chrY	59113723	.	T	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant11	GT:AD:BQ:DP:FA:SS	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:9,5:18:14:0.357:2	./.	./.	./.	./.	./.	./.	./.	./.	./.
chrY	59113847	rs111830242	C	T	.	PASS	AC=1;AF=0.333;AN=3;DB;SOMATIC;VT=SNP;set=variant2	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:21,19:30:40:0.475:2	./.
chrY	59114018	rs77442791	T	C	.	PASS	AC=5;AF=0.333;AN=15;DB;SOMATIC;VT=SNP;set=variant2-variant4-variant8-variant10-variant11	GT:AD:BQ:DP:FA:SS	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	0/1:31,20:28:51:0.392:2	0/1:15,9:29:24:0.375:2	0/1:3,3:29:6:0.500:2	./.	./.	./.	./.	0/1:21,11:30:32:0.344:2	./.	0/1:19,18:29:37:0.486:2	./.
chrY	59114222	rs700453	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,60:33:60:1.00:2	0/1:0,29:33:29:1.00:2	0/1:0,6:32:6:1.00:2	0/1:0,64:33:64:1.00:2	0/1:0,38:32:39:1.00:2	0/1:0,63:32:63:1.00:2	0/1:0,16:33:16:1.00:2	0/1:0,42:32:42:1.00:2	0/1:0,48:34:48:1.00:2	0/1:0,34:33:34:1.00:2	0/1:0,60:33:60:1.00:2
chrY	59114282	rs700454	C	T	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,56:32:56:1.00:2	0/1:0,27:32:27:1.00:2	0/1:0,8:32:8:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,29:32:29:1.00:2	0/1:0,55:31:55:1.00:2	0/1:0,17:32:17:1.00:2	0/1:0,42:31:42:1.00:2	0/1:0,56:32:56:1.00:2	0/1:0,30:32:30:1.00:2	0/1:0,53:31:53:1.00:2
chrY	59114338	rs700455	T	C	.	PASS	AC=6;AF=0.333;AN=18;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:20,15:29:35:0.429:2	0/1:0,31:28:31:1.00:2	0/1:1,44:29:45:0.978:2	./.	0/1:35,18:30:53:0.340:2	./.	0/1:23,19:30:42:0.452:2	0/1:31,31:30:63:0.500:2
chrY	59114478	rs700456	T	A	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:0,77:32:77:1.00:2	0/1:0,43:32:43:1.00:2	0/1:0,10:31:10:1.00:2	0/1:0,55:32:55:1.00:2	0/1:0,72:31:72:1.00:2	0/1:0,85:31:85:1.00:2	0/1:0,74:32:74:1.00:2	0/1:0,85:32:85:1.00:2	0/1:0,83:33:83:1.00:2	0/1:0,72:32:72:1.00:2	0/1:0,57:32:57:1.00:2
chrY	59114835	rs28629790	T	G	.	PASS	AC=3;AF=0.333;AN=9;DB;SOMATIC;VT=SNP;set=variant2-variant3-variant5	GT:AD:BQ:DP:FA:SS	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:26,15:32:41:0.366:2	./.	0/1:40,15:32:55:0.273:2	0/1:0,43:31:43:1.00:2	./.
chrY	59114932	rs306873	T	C	.	PASS	AC=11;AF=0.333;AN=33;DB;SOMATIC;VT=SNP;set=Intersection	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:15,19:32:34:0.559:2	0/1:6,10:33:16:0.625:2	0/1:2,4:33:6:0.667:2	0/1:15,18:32:33:0.545:2	0/1:14,5:32:19:0.263:2	0/1:1,33:32:34:0.971:2	0/1:10,4:32:14:0.286:2	0/1:0,20:31:20:1.00:2	0/1:14,8:33:22:0.364:2	0/1:0,27:31:27:1.00:2	0/1:14,26:30:40:0.650:2
chrY	59233173	.	C	G	.	PASS	AC=1;AF=0.333;AN=3;SOMATIC;VT=SNP;set=variant	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:182,4:33:186:0.022:2
chrY	59274543	rs5940625	G	C	.	PASS	AC=9;AF=0.333;AN=27;DB;SOMATIC;VT=SNP;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	0/1:1,78:32:79:0.987:2	0/1:0,35:31:35:1.00:2	0/1:11,4:33:15:0.267:2	0/1:58,43:32:101:0.426:2	0/1:43,41:32:84:0.488:2	0/1:72,50:32:122:0.410:2	./.	0/1:2,122:31:124:0.984:2	./.	0/1:1,71:31:72:0.986:2	0/1:80,46:31:126:0.365:2
chrY	59342505	rs142104921	G	A	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant3-variant4	GT:AD:BQ:DP:FA:SS	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	./.	0/1:10,3:31:13:0.231:2	0/1:21,3:33:24:0.125:2	./.	./.
chrY	59342830	rs200413398	A	G	.	PASS	AC=4;AF=0.333;AN=12;DB;SOMATIC;VT=SNP;set=variant-variant4-variant5-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	0:0,0:.:0:0.00:0	0:0,0:.:0:0.00:0	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:54,26:32:80:0.325:2	./.	./.	0/1:91,4:33:95:0.042:2	0/1:61,4:33:65:0.062:2	./.	./.	0/1:29,16:33:45:0.356:2
chrY	59342833	rs150178903	A	G	.	PASS	AC=2;AF=0.333;AN=6;DB;SOMATIC;VT=SNP;set=variant-variant9	GT:AD:BQ:DP:FA:SS	0:0,0:.:0:0.00:0	./.	./.	./.	./.	./.	./.	./.	./.	./.	0:0,0:.:0:0.00:0	./.	./.	./.	0/1:60,22:33:82:0.268:2	./.	./.	./.	./.	./.	./.	0/1:27,17:30:44:0.386:2